5317 174 22 8 chr11 31 255 -150783298 - MER4-int LTR ERV1 -1716 5821 5602 242 56 28 0 chr11 255 291 -150783262 + (TA)n Simple_repeat Simple_repeat 1 37 0 5317 174 22 8 chr11 291 1126 -150782427 - MER4-int LTR ERV1 -1935 5602 4747 878 93 34 118 chr11 1128 1259 -150782294 - LTR8 LTR ERV1 -504 187 77 2031 118 10 10 chr11 1259 1556 -150781997 + AluSq SINE Alu 1 297 -16 878 93 34 118 chr11 1556 1628 -150781925 - LTR8 LTR ERV1 -614 77 1 364 210 34 125 chr11 1644 1885 -150781668 - MER4-int LTR ERV1 -3658 1982 1091 278 233 50 53 chr11 1895 2100 -150781453 - MER34C LTR ERV1 -172 413 154 2238 95 0 0 chr11 2180 2476 -150781077 + AluY SINE Alu 1 296 -15 353 191 12 12 chr11 2687 2771 -150780782 - MER4-int LTR ERV1 -6697 840 757 1304 152 56 106 chr11 2790 2876 -150780677 - AluJo SINE Alu -6 306 217 4277 71 5 23 chr11 2876 3440 -150780113 - MER41A LTR ERV1 0 554 1 1304 152 56 106 chr11 3440 3675 -150779878 - AluJo SINE Alu -95 217 1 3458 204 10 31 chr11 3675 4458 -150779095 - MER4-int LTR ERV1 -6770 767 1 1966 99 4 4 chr11 4476 4748 -150778805 + AluSx SINE Alu 1 272 -40 669 225 3 0 chr11 4863 5153 -150778400 + (TCCA)n Simple_repeat Simple_repeat 1 291 0 735 238 4 0 chr11 5182 5886 -150777667 + (TCCA)n Simple_repeat Simple_repeat 1 707 0 287 289 20 130 chr11 7217 7463 -150776090 - L3 LINE CR1 -437 1140 922 189 0 0 0 chr11 14182 14203 -150769350 + (CAGA)n Simple_repeat Simple_repeat 1 21 0 293 275 0 14 chr11 15166 15235 -150768318 + MIR3 SINE MIR 104 171 -37 2298 86 3 3 chr11 19161 19464 -150764089 - AluSp SINE Alu -10 303 1 187 270 25 82 chr11 22918 23077 -150760476 - L2 LINE L2 -190 3082 2933 189 147 0 52 chr11 24421 24537 -150759016 + (CCTG)n Simple_repeat Simple_repeat 2 111 0 299 204 0 56 chr11 24547 24709 -150758844 + CT-rich Low_complexity Low_complexity 2 154 0 576 174 31 6 chr11 24866 25027 -150758526 + CT-rich Low_complexity Low_complexity 2 166 0 211 204 0 0 chr11 25419 25463 -150758090 + CT-rich Low_complexity Low_complexity 2 45 0 235 291 63 13 chr11 28243 28322 -150755231 + MIR SINE MIR 108 190 -72 196 305 52 31 chr11 28439 28572 -150754981 - MIR SINE MIR -52 156 51 269 356 6 23 chr11 29025 29199 -150754354 + CT-rich Low_complexity Low_complexity 1 171 0 204 97 0 0 chr11 31152 31183 -150752370 + (TG)n Simple_repeat Simple_repeat 1 31 0 188 163 0 20 chr11 33880 33929 -150749624 + CT-rich Low_complexity Low_complexity 3 50 0 300 111 0 0 chr11 34026 34071 -150749482 + (TCCC)n Simple_repeat Simple_repeat 2 46 0 209 284 21 11 chr11 34326 34421 -150749132 + CT-rich Low_complexity Low_complexity 2 97 0 315 191 0 0 chr11 34421 34484 -150749069 + C-rich Low_complexity Low_complexity 1 63 0 220 323 32 0 chr11 35000 35093 -150748460 - MIR SINE MIR -74 134 39 276 217 300 17 chr11 36065 36185 -150747368 + L3 LINE CR1 1349 1502 -75 587 200 0 7 chr11 36306 36446 -150747107 + (TCCA)n Simple_repeat Simple_repeat 4 142 0 237 224 0 0 chr11 36582 36631 -150746922 + Alu SINE Alu 237 285 -17 227 217 0 0 chr11 36639 36685 -150746868 + Alu SINE Alu 237 282 -20 227 217 0 0 chr11 36704 36750 -150746803 + Alu SINE Alu 237 282 -20 263 184 0 0 chr11 36765 36814 -150746739 + Alu SINE Alu 237 285 -17 227 217 0 0 chr11 36879 36925 -150746628 + Alu SINE Alu 237 282 -20 227 217 0 0 chr11 36940 36986 -150746567 + Alu SINE Alu 237 282 -20 195 69 0 0 chr11 36993 37022 -150746531 + (CA)n Simple_repeat Simple_repeat 1 29 0 231 61 0 0 chr11 37052 37085 -150746468 + (CA)n Simple_repeat Simple_repeat 1 33 0 210 91 0 0 chr11 37119 37152 -150746401 + (CA)n Simple_repeat Simple_repeat 1 33 0 231 61 0 0 chr11 37182 37215 -150746338 + (CA)n Simple_repeat Simple_repeat 1 33 0 252 204 0 0 chr11 37253 37302 -150746251 + AluJ/monomer SINE Alu 237 285 -17 249 57 0 0 chr11 37384 37419 -150746134 + (CA)n Simple_repeat Simple_repeat 1 35 0 253 83 0 0 chr11 37419 37455 -150746098 + Alu SINE Alu 250 285 -17 339 111 25 12 chr11 37501 37582 -150745971 + (CA)n Simple_repeat Simple_repeat 2 83 0 235 132 0 0 chr11 37595 37633 -150745920 + Alu SINE Alu 247 284 -18 204 40 0 0 chr11 37633 37658 -150745895 + (CA)n Simple_repeat Simple_repeat 2 26 0 258 32 0 0 chr11 37688 37719 -150745834 + (CA)n Simple_repeat Simple_repeat 2 32 0 270 0 0 0 chr11 37801 37831 -150745722 + (CA)n Simple_repeat Simple_repeat 1 30 0 1907 162 10 36 chr11 38177 38528 -150745025 - MLT1B LTR MaLR -5 385 43 2175 86 17 0 chr11 38528 38818 -150744735 - AluSx SINE Alu -17 295 1 1907 162 10 36 chr11 38818 38854 -150744699 - MLT1B LTR MaLR -347 43 8 999 135 6 6 chr11 38922 39078 -150744475 - AluJb SINE Alu -156 156 1 341 318 26 0 chr11 39703 39854 -150743699 + (TCTA)n Simple_repeat Simple_repeat 4 158 0 265 229 8 8 chr11 39856 39978 -150743575 + (TCCA)n Simple_repeat Simple_repeat 3 124 0 377 328 8 0 chr11 40140 40262 -150743291 + (TCCA)n Simple_repeat Simple_repeat 4 126 0 731 162 12 12 chr11 40315 40488 -150743065 + (TCCA)n Simple_repeat Simple_repeat 4 176 0 266 319 45 70 chr11 42552 42675 -150740878 + MIR SINE MIR 89 209 -53 2090 117 0 3 chr11 42675 42973 -150740580 + AluSx SINE Alu 1 297 -15 266 319 45 70 chr11 42973 43006 -150740547 + MIR SINE MIR 209 241 -21 195 250 54 18 chr11 43020 43076 -150740477 - MIR SINE MIR -58 150 93 322 172 17 103 chr11 49297 49372 -150734181 - MER45A DNA AcHobo -1405 176 113 2296 100 0 0 chr11 49372 49681 -150733872 + AluSx SINE Alu 1 309 -3 322 172 17 103 chr11 49681 49721 -150733832 - MER45A DNA AcHobo -1468 113 71 833 228 103 70 chr11 49864 50052 -150733501 + MLT1C LTR MaLR 9 189 -278 2294 88 0 25 chr11 50052 50369 -150733184 + AluY SINE Alu 1 309 -2 833 228 103 70 chr11 50369 50539 -150733014 + MLT1C LTR MaLR 189 379 -88 234 0 0 0 chr11 51152 51178 -150732375 + (TG)n Simple_repeat Simple_repeat 1 26 0 1720 165 0 14 chr11 51190 51475 -150732078 - AluJb SINE Alu -29 283 3 816 157 8 15 chr11 52554 52688 -150730865 - FLAM_C SINE Alu 0 133 1 1501 145 47 63 chr11 52697 53014 -150730539 - AluJb SINE Alu 0 312 1 351 327 60 36 chr11 53830 54215 -150729338 - L2 LINE L2 -66 3206 2813 246 62 0 0 chr11 54870 54902 -150728651 + (CCCTAA)n Simple_repeat Simple_repeat 1 32 0 300 296 84 56 chr11 55144 55286 -150728267 - L1MC4 LINE L1 -10 8032 7887 392 354 86 48 chr11 55295 55852 -150727701 - L1M4c LINE L1 -4896 1488 911 463 266 36 0 chr11 55996 56186 -150727367 - L1MC4 LINE L1 -993 6900 6616 215 175 35 18 chr11 59756 59813 -150723740 + (CCCG)n Simple_repeat Simple_repeat 3 60 0 280 231 66 0 chr11 64341 64432 -150719121 + (CAGCC)n Simple_repeat Simple_repeat 4 100 0 486 49 0 0 chr11 66870 66931 -150716622 + (CA)n Simple_repeat Simple_repeat 2 62 0 811 190 74 0 chr11 67240 67403 -150716150 + MER45A DNA AcHobo 1 175 -3 211 189 0 0 chr11 67769 67806 -150715747 + (CGTG)n Simple_repeat Simple_repeat 3 39 0 262 260 10 30 chr11 76287 76387 -150707166 + (CACG)n Simple_repeat Simple_repeat 2 99 0 690 130 10 0 chr11 78574 78674 -150704879 - AluY SINE Alu -108 203 103 227 183 14 0 chr11 78919 78990 -150704563 - L1MDb LINE L1 -5202 1207 1136 813 193 175 9 chr11 79111 79334 -150704219 - Tigger7 DNA MER2_type -16 2571 2312 564 211 0 68 chr11 79341 79410 -150704143 - Tigger7 DNA MER2_type -534 171 115 2018 121 7 0 chr11 79410 79734 -150703819 + AluSx SINE Alu 1 326 0 564 211 0 68 chr11 79734 79810 -150703743 - Tigger7 DNA MER2_type -590 115 35 1399 210 20 37 chr11 79835 80092 -150703461 - MLT1B LTR MaLR -48 342 91 1485 112 0 31 chr11 80092 80316 -150703237 + AluSg/x SINE Alu 86 302 -10 1399 210 20 37 chr11 80316 80406 -150703147 - MLT1B LTR MaLR -299 91 1 2067 127 0 0 chr11 81989 82288 -150701265 + AluSx SINE Alu 1 299 -13 2176 125 0 3 chr11 82530 82834 -150700719 + AluSx SINE Alu 1 303 -9 1132 190 73 6 chr11 82849 83137 -150700416 + L1MB3 LINE L1 5875 6182 -1 768 293 6 45 chr11 83152 83486 -150700067 + L1MC4 LINE L1 6703 7023 -1019 1389 218 199 31 chr11 83536 84049 -150699504 + MLT1E1 LTR MaLR 56 654 0 384 185 152 26 chr11 84114 84265 -150699288 + L1MC5 LINE L1 7036 7205 -756 566 188 228 0 chr11 84266 84415 -150699138 + MER20 DNA MER1_type 1 183 -36 1869 213 158 4 chr11 84421 84928 -150698625 + MLT1E LTR MaLR 7 591 -2 889 257 139 46 chr11 85055 85581 -150697972 - MLT1E2 LTR MaLR 0 626 52 594 238 0 21 chr11 85642 85785 -150697768 - MER58A DNA MER1_type 0 140 1 400 314 78 26 chr11 86053 86359 -150697194 + L1MC5 LINE L1 7400 7721 -240 215 200 0 0 chr11 87098 87133 -150696420 + polypurine Low_complexity Low_complexity 1 35 0 1122 166 0 3 chr11 87147 87458 -150696095 + (TGGA)n Simple_repeat Simple_repeat 1 311 0 1629 137 4 15 chr11 87559 87830 -150695723 - AluJo SINE Alu -40 272 5 1417 258 95 54 chr11 87835 88426 -150695127 - L1ME1 LINE L1 -223 6012 5337 2275 97 0 0 chr11 88426 88724 -150694829 - AluSq SINE Alu -8 305 8 1417 258 95 54 chr11 88724 89149 -150694404 - L1ME1 LINE L1 -898 5337 4931 899 183 0 12 chr11 89149 89313 -150694240 + AluJb SINE Alu 128 289 -23 1557 276 72 30 chr11 89327 90178 -150693375 - L1ME1 LINE L1 -1306 4909 3978 2089 193 33 0 chr11 90179 90568 -150692985 - MER57A LTR ERV1 0 403 2 940 198 45 0 chr11 90577 90779 -150692774 - MER57A-int LTR ERV1 -47 7490 7280 588 145 23 30 chr11 90779 90910 -150692643 - LTR54B LTR ERV1 -366 132 3 2130 205 13 26 chr11 90910 91378 -150692175 - MER57A-int LTR ERV1 -391 7146 6685 1353 111 5 0 chr11 91761 91950 -150691603 + AluY SINE Alu 103 292 -19 364 320 31 2 chr11 91994 92179 -150691374 + L1M4 LINE L1 5175 5363 -783 2139 129 3 0 chr11 92397 92706 -150690847 + AluSx SINE Alu 1 310 -2 1710 154 48 3 chr11 92931 93223 -150690330 + AluJo SINE Alu 1 305 -7 2188 100 3 3 chr11 93537 93836 -150689717 - AluSx SINE Alu -13 299 1 1937 134 0 49 chr11 93836 94164 -150689389 - AluJb SINE Alu 0 312 1 943 219 24 39 chr11 94166 94234 -150689319 - L1ME1 LINE L1 -4038 2358 2291 1560 166 7 36 chr11 94234 94536 -150689017 - AluJo SINE Alu -19 293 1 943 219 24 39 chr11 94536 94805 -150688748 - L1ME1 LINE L1 -4105 2291 2026 1677 263 69 73 chr11 94815 95658 -150687895 - L1ME1 LINE L1 -5523 873 35 2070 111 0 7 chr11 95826 96124 -150687429 - AluSx SINE Alu -16 296 1 350 276 31 34 chr11 96387 96546 -150687007 + MIR SINE MIR 31 187 -68 450 415 36 36 chr11 96741 97131 -150686422 - L1M4 LINE L1 -1525 4621 4232 304 298 31 19 chr11 97141 97302 -150686251 - L1M4 LINE L1 -1948 4198 4036 729 105 202 0 chr11 97513 97627 -150685926 + AluJb SINE Alu 1 137 -175 1450 158 90 23 chr11 97629 97740 -150685813 + AluJb SINE Alu 3 105 -207 2348 77 7 0 chr11 97740 98039 -150685514 + AluSc SINE Alu 1 301 -8 1450 158 90 23 chr11 98039 98219 -150685334 + AluJb SINE Alu 105 312 0 1594 74 5 0 chr11 98667 98870 -150684683 - AluSg/x SINE Alu -20 292 89 2042 62 13 65 chr11 98977 99286 -150684267 - AluY SINE Alu -18 293 1 424 337 58 0 chr11 99286 99458 -150684095 - L1M4 LINE L1 -3109 3037 2856 201 261 25 25 chr11 100062 100181 -150683372 + (TG)n Simple_repeat Simple_repeat 2 120 0 221 240 31 31 chr11 100215 100344 -150683209 + (TG)n Simple_repeat Simple_repeat 2 130 0 243 0 0 0 chr11 100423 100450 -150683103 + (TG)n Simple_repeat Simple_repeat 2 28 0 243 0 0 0 chr11 100694 100721 -150682832 + (TG)n Simple_repeat Simple_repeat 2 28 0 261 294 20 20 chr11 100753 100906 -150682647 + (TG)n Simple_repeat Simple_repeat 2 154 0 243 0 0 0 chr11 100980 101007 -150682546 + (TG)n Simple_repeat Simple_repeat 2 28 0 189 74 0 0 chr11 101228 101255 -150682298 + (TG)n Simple_repeat Simple_repeat 2 28 0 371 193 48 24 chr11 101366 101532 -150682021 + (TG)n Simple_repeat Simple_repeat 1 170 0 369 182 18 18 chr11 107806 107916 -150675637 + (TGGA)n Simple_repeat Simple_repeat 3 112 0 616 242 4 4 chr11 107955 108192 -150675361 + (TGGG)n Simple_repeat Simple_repeat 1 237 0 735 192 0 0 chr11 108193 108370 -150675183 + (TGGA)n Simple_repeat Simple_repeat 1 177 0 205 171 0 0 chr11 108393 108428 -150675125 + (TGGA)n Simple_repeat Simple_repeat 1 35 0 327 330 70 70 chr11 109228 109573 -150673980 + L1ME4a LINE L1 5016 5360 -786 1211 288 76 43 chr11 109625 110306 -150673247 + L1ME4a LINE L1 5418 6121 0 205 156 47 47 chr11 116924 117061 -150666492 + (CAGAGA)n Simple_repeat Simple_repeat 1 137 0 207 100 0 0 chr11 118097 118127 -150665426 + (GA)n Simple_repeat Simple_repeat 2 31 0 207 100 0 0 chr11 118637 118667 -150664886 + (GA)n Simple_repeat Simple_repeat 2 31 0 191 133 22 0 chr11 118823 118868 -150664685 + GA-rich Low_complexity Low_complexity 2 47 0 316 265 31 20 chr11 119073 119171 -150664382 - L3 LINE CR1 -12 1565 1467 766 224 12 9 chr11 125700 126022 -150657531 + (TCCA)n Simple_repeat Simple_repeat 1 323 0 332 263 0 0 chr11 126052 126189 -150657364 + (TCCA)n Simple_repeat Simple_repeat 2 138 0 315 156 21 104 chr11 126535 126620 -150656933 + FRAM SINE Alu 72 150 -152 384 22 0 0 chr11 126620 126665 -150656888 + (CA)n Simple_repeat Simple_repeat 2 46 0 189 154 0 0 chr11 127268 127307 -150656246 + (TGAA)n Simple_repeat Simple_repeat 4 42 0 180 125 0 0 chr11 127435 127467 -150656086 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 180 77 0 0 chr11 127486 127512 -150656041 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 2247 242 23 0 chr11 128003 128578 -150654975 + L1MC1 LINE L1 5498 6085 -248 794 187 74 20 chr11 128577 128780 -150654773 + L1MC2 LINE L1 6120 6333 -11 * 1857 146 14 0 chr11 128796 129110 -150654443 + AluSx SINE Alu 1 318 0 2255 100 0 19 chr11 129111 129422 -150654131 + AluSc SINE Alu 1 305 -4 302 100 67 0 chr11 129426 129486 -150654067 + MER53 DNA DNA 125 188 -1 219 254 16 70 chr11 131060 131245 -150652308 + G-rich Low_complexity Low_complexity 4 178 0 380 228 31 19 chr11 131275 131491 -150652062 + (CGGGG)n Simple_repeat Simple_repeat 1 218 0 23 68 0 0 chr11 131959 132003 -150651550 + GC_rich Low_complexity Low_complexity 1 44 0 321 250 104 0 chr11 136380 136476 -150647077 - MIR SINE MIR -134 128 23 1257 280 104 10 chr11 145349 145838 -150637715 - L1MB7 LINE L1 0 6184 5650 1970 125 54 0 chr11 150244 150540 -150633013 + AluSx SINE Alu 1 312 0 376 219 10 0 chr11 161647 161743 -150621810 + L1MB3 LINE L1 6029 6125 -58 2183 103 7 0 chr11 162510 162812 -150620741 + AluSp SINE Alu 3 306 -7 390 292 28 35 chr11 169405 169549 -150614004 + MIR SINE MIR 2 144 -118 1841 168 27 0 chr11 170085 170382 -150613171 - AluJo SINE Alu -7 305 1 264 77 0 0 chr11 171260 171299 -150612254 + (GGCTG)n Simple_repeat Simple_repeat 1 39 0 * 891 129 0 0 chr11 171298 171476 -150612077 + (CAGGG)n Simple_repeat Simple_repeat 3 180 0 453 147 0 0 chr11 171476 171571 -150611982 + (GGCTG)n Simple_repeat Simple_repeat 4 98 0 211 308 15 0 chr11 175372 175437 -150608116 + G-rich Low_complexity Low_complexity 1 66 0 387 0 0 0 chr11 175586 175629 -150607924 + (CA)n Simple_repeat Simple_repeat 1 43 0 3699 140 42 74 chr11 187516 187551 -150596002 + LTR8 LTR ERV1 1 36 -655 2207 119 0 0 chr11 187551 187861 -150595692 + AluSq SINE Alu 1 310 -3 3699 140 42 74 chr11 187861 188537 -150595016 + LTR8 LTR ERV1 36 689 -2 2302 73 20 0 chr11 188788 189090 -150594463 - AluY SINE Alu -2 309 2 728 276 107 48 chr11 189940 190360 -150593193 - MLT1C LTR MaLR -6 461 17 1099 210 20 0 chr11 190688 190940 -150592613 + MLT1B LTR MaLR 128 384 -6 789 297 50 28 chr11 191178 191575 -150591978 - MLT1C LTR MaLR -9 458 53 555 321 29 7 chr11 191689 191963 -150591590 + MLT2F LTR ERVL 380 659 -4 331 312 70 28 chr11 192149 192643 -150590910 + MLT1H1 LTR MaLR 28 540 -15 180 0 0 0 chr11 193606 193626 -150589927 + (TC)n Simple_repeat Simple_repeat 1 20 0 221 234 0 0 chr11 194302 194349 -150589204 + L2 LINE L2 3266 3312 -1 233 202 40 40 chr11 195589 195688 -150587865 + MLT1J2 LTR MaLR 264 362 -88 944 242 60 4 chr11 197115 197396 -150586157 + MLT1B LTR MaLR 1 297 -93 396 40 0 0 chr11 198820 198870 -150584683 + (TCC)n Simple_repeat Simple_repeat 1 50 0 21 0 0 0 chr11 198960 198981 -150584572 + AT_rich Low_complexity Low_complexity 1 21 0 2186 103 0 13 chr11 204150 204460 -150579093 + AluSp SINE Alu 1 306 -7 553 235 92 31 chr11 204482 204678 -150578875 + MER63A DNA MER1_type 1 208 -2 189 167 0 0 chr11 205401 205455 -150578098 + (GTGTG)n Simple_repeat Simple_repeat 5 58 0 471 285 26 47 chr11 206737 206930 -150576623 - MER53 DNA DNA 0 189 1 289 225 8 4 chr11 207733 207980 -150575573 + (TG)n Simple_repeat Simple_repeat 1 248 0 246 240 0 0 chr11 210578 210628 -150572925 - MIR3 SINE MIR -50 158 109 2569 42 0 3 chr11 224821 225131 -150558422 + AluY SINE Alu 1 309 -2 195 300 0 43 chr11 225605 225675 -150557878 + L2 LINE L2 3227 3293 -20 365 328 87 45 chr11 226208 226543 -150557010 - L1MEd LINE L1 -5013 1106 758 309 385 70 45 chr11 227165 227477 -150556076 - L1MEd LINE L1 -4959 1160 841 1652 145 106 0 chr11 227497 227779 -150555774 - AluSx SINE Alu 0 312 1 1864 128 0 4 chr11 279176 279449 -150504104 - AluSx SINE Alu -29 283 12 757 124 0 83 chr11 279478 279623 -150503930 - FLAM_C SINE Alu 0 133 1 913 280 94 9 chr11 279630 280052 -150503501 - L1M4 LINE L1 -864 5282 4785 711 250 30 0 chr11 280052 280220 -150503333 - MER20 DNA MER1_type 0 219 47 490 207 0 0 chr11 280236 280323 -150503230 - MLT1B LTR MaLR -15 375 289 874 217 0 17 chr11 280323 280503 -150503050 - AluSx SINE Alu -133 179 3 1430 245 39 55 chr11 280587 281207 -150502346 - L1M4 LINE L1 -2508 3638 3029 601 225 0 0 chr11 281214 281334 -150502219 - AluJb SINE Alu -8 304 185 2047 104 24 0 chr11 281875 282163 -150501390 - AluSx SINE Alu -16 296 2 257 292 44 9 chr11 282784 282897 -150500656 - L1M4 LINE L1 -2587 3559 3443 944 121 0 7 chr11 282944 283084 -150500469 - AluSg/x SINE Alu -10 300 162 414 84 0 92 chr11 283288 283430 -150500123 + (TCTCC)n Simple_repeat Simple_repeat 5 133 0 1801 160 43 62 chr11 283787 284205 -150499348 - MLT2D LTR ERVL 0 414 5 200 230 150 40 chr11 284617 284717 -150498836 + L2 LINE L2 3161 3271 -1 454 117 0 0 chr11 285633 285693 -150497860 + AluS SINE Alu 232 291 -19 949 208 0 0 chr11 285711 285894 -150497659 - AluJb SINE Alu -5 307 125 1750 114 4 4 chr11 285958 286222 -150497331 - AluSx SINE Alu -48 264 1 227 303 101 8 chr11 286268 286387 -150497166 - L1M4 LINE L1 -3352 2794 2665 2001 107 0 14 chr11 287730 288020 -150495533 + AluSx SINE Alu 1 286 -26 2095 246 127 25 chr11 288054 288746 -150494807 - L1ME1 LINE L1 -54 6181 5412 315 0 0 0 chr11 288746 288781 -150494772 + (TA)n Simple_repeat Simple_repeat 1 35 0 2095 246 127 25 chr11 288781 288807 -150494746 - L1ME1 LINE L1 -823 5412 5390 1955 120 3 42 chr11 288807 289116 -150494437 - AluSx SINE Alu -15 297 1 3819 136 3 8 chr11 289132 289742 -150493811 + L1PB3 LINE L1 5546 6152 -2 31 26 0 0 chr11 289742 289780 -150493773 + AT_rich Low_complexity Low_complexity 1 38 0 1302 248 3 7 chr11 289827 290130 -150493423 - AluSx SINE Alu 0 302 1 33 43 0 0 chr11 290133 290180 -150493373 + AT_rich Low_complexity Low_complexity 1 47 0 1376 218 12 65 chr11 290308 290614 -150492939 - L1ME1 LINE L1 -2008 4207 3927 2341 65 0 34 chr11 290614 290936 -150492617 - AluY SINE Alu 0 311 1 1376 218 12 65 chr11 290936 291041 -150492512 - L1ME1 LINE L1 -2288 3927 3818 790 267 40 30 chr11 291043 291339 -150492214 - L1M4 LINE L1 -761 5385 5087 907 204 0 0 chr11 291344 291511 -150492042 + FRAM SINE Alu 1 163 -13 1473 217 72 21 chr11 291512 291940 -150491613 - L1M4 LINE L1 -1059 5087 4638 722 205 8 0 chr11 291942 292064 -150491489 + FLAM_C SINE Alu 2 124 -19 910 257 30 10 chr11 292094 292390 -150491163 - L1M4 LINE L1 -1503 4643 4342 2249 109 0 0 chr11 292401 292703 -150490850 - AluSx SINE Alu -10 302 1 1729 219 50 48 chr11 292705 293201 -150490352 - L1ME1 LINE L1 -3999 2397 1898 2091 117 0 0 chr11 293201 293499 -150490054 + AluSx SINE Alu 1 298 -14 1729 219 50 48 chr11 293499 293563 -150489990 - L1ME1 LINE L1 -4498 1898 1836 195 42 0 0 chr11 293970 293994 -150489559 + (A)n Simple_repeat Simple_repeat 1 24 0 1251 246 60 67 chr11 293996 294643 -150488910 - L1ME1 LINE L1 -4599 1797 1155 2345 88 3 0 chr11 294644 294952 -150488601 - AluY SINE Alu 0 311 3 814 105 0 0 chr11 294952 295057 -150488496 - AluSg/x SINE Alu -14 296 192 334 89 13 0 chr11 295158 295209 -150488344 - Alu SINE Alu -262 41 1 2173 221 58 81 chr11 295233 296014 -150487539 - L1ME1 LINE L1 -5300 1096 334 1599 105 42 0 chr11 296019 296258 -150487295 - AluSx SINE Alu -12 300 52 1937 78 0 0 chr11 296451 296706 -150486847 - AluY SINE Alu 0 311 57 183 42 0 0 chr11 296981 297005 -150486548 + (TTTTG)n Simple_repeat Simple_repeat 1 24 0 1887 98 49 0 chr11 297005 297271 -150486282 - AluSx SINE Alu -33 279 1 745 301 105 18 chr11 297952 298145 -150485408 - L2 LINE L2 -756 2558 2383 2168 80 6 16 chr11 298145 298456 -150485097 - AluSx SINE Alu 0 312 5 745 301 105 18 chr11 298456 298654 -150484899 - L2 LINE L2 -931 2383 2133 312 263 50 0 chr11 298838 298937 -150484616 + MIR SINE MIR 2 105 -157 2141 106 0 13 chr11 298982 299283 -150484270 - AluSx SINE Alu -15 297 1 436 301 76 42 chr11 299356 299618 -150483935 + L1M4 LINE L1 5063 5333 -813 429 298 42 26 chr11 299751 300095 -150483458 - L1ME LINE L1 -716 5454 5106 383 250 27 27 chr11 300154 300302 -150483251 + L1ME3A LINE L1 6011 6158 -12 910 240 413 7 chr11 300740 301178 -150482375 + L1MC4 LINE L1 6469 7084 -958 989 216 90 50 chr11 301276 301424 -150482129 + L1MC4 LINE L1 7322 7463 -579 1454 200 104 35 chr11 301424 301769 -150481784 + MLT1A2 LTR MaLR 2 370 -4 989 216 90 50 chr11 301769 301898 -150481655 + L1MC4 LINE L1 7463 7610 -432 338 248 67 89 chr11 301916 302186 -150481367 - L1M4 LINE L1 -926 5154 4891 382 347 17 42 chr11 302616 302855 -150480698 - L1M4 LINE L1 -1194 4886 4654 1688 275 75 56 chr11 302856 303377 -150480176 - L1ME LINE L1 -2734 3346 2836 2366 47 0 14 chr11 303377 303674 -150479879 - AluY SINE Alu -17 294 2 1688 275 75 56 chr11 303674 303697 -150479856 - L1ME LINE L1 -3244 2836 2815 1937 108 34 10 chr11 303697 303993 -150479560 - AluSq SINE Alu -10 303 1 1688 275 75 56 chr11 303993 304595 -150478958 - L1ME LINE L1 -3265 2815 2226 1519 98 0 0 chr11 304595 304798 -150478755 - AluSg/x SINE Alu -24 286 84 1744 151 0 30 chr11 304800 305104 -150478449 - AluJo SINE Alu -17 295 1 1688 275 75 56 chr11 305104 305300 -150478253 - L1ME LINE L1 -3854 2226 2035 1888 119 7 4 chr11 305300 305598 -150477955 - AluSg SINE Alu 0 299 1 1688 275 75 56 chr11 305598 306195 -150477358 - L1ME LINE L1 -4045 2035 1334 233 278 9 56 chr11 306424 306532 -150477021 - MER103 DNA DNA -45 121 19 439 297 91 61 chr11 306666 307072 -150476481 - L1ME LINE L1 -5162 908 551 363 36 0 18 chr11 307437 307493 -150476060 - AluY SINE Alu 0 301 247 234 184 41 0 chr11 307471 307520 -150476033 - Alu SINE Alu -248 51 1 * 820 101 0 0 chr11 307546 307655 -150475898 + AluSq/x SINE Alu 3 111 -202 1823 64 4 0 chr11 307655 307889 -150475664 - AluY SINE Alu -76 235 1 1343 112 5 0 chr11 308360 308548 -150475005 + AluSx SINE Alu 1 189 -123 638 181 206 0 chr11 308649 308804 -150474749 - MER34 LTR ERV1 -316 226 40 1968 89 62 3 chr11 308815 309107 -150474446 - AluSc SINE Alu 0 309 1 510 240 177 40 chr11 309188 309663 -150473890 - L1M4 LINE L1 -2848 3298 2759 599 285 14 36 chr11 309664 309764 -150473789 - L1M4 LINE L1 -2479 3667 3566 2102 124 0 6 chr11 309764 310079 -150473474 - AluSq SINE Alu 0 313 1 599 285 14 36 chr11 310079 310199 -150473354 - L1M4 LINE L1 -2580 3566 3452 441 316 109 41 chr11 310496 310889 -150472664 - L1ME LINE L1 -5611 459 40 480 297 44 27 chr11 311025 311298 -150472255 + L1ME2 LINE L1 2719 3001 -3145 1670 226 30 6 chr11 311298 311634 -150471919 + MER2 DNA MER2_type 1 344 0 480 297 44 27 chr11 311634 311727 -150471826 + L1ME2 LINE L1 3001 3091 -3055 189 139 0 0 chr11 313175 313218 -150470335 + (T)n Simple_repeat Simple_repeat 1 43 0 2253 80 0 22 chr11 313609 313921 -150469632 - AluY SINE Alu -6 305 1 720 324 21 64 chr11 314098 314521 -150469032 + L1ME2 LINE L1 3056 3460 -2686 281 343 75 0 chr11 314648 314782 -150468771 + L1ME2 LINE L1 3620 3763 -2383 2045 53 4 15 chr11 315011 315277 -150468276 + L1PA4 LINE L1 5889 6151 -4 2208 101 7 7 chr11 315392 315700 -150467853 - AluSq SINE Alu -5 308 1 446 254 45 50 chr11 315701 315921 -150467632 - L1M4 LINE L1 -2059 4087 3869 730 223 52 24 chr11 316212 316423 -150467130 + L1ME2 LINE L1 4915 5131 -1015 2240 91 3 0 chr11 316428 316725 -150466828 + AluSx SINE Alu 1 298 -14 973 220 43 134 chr11 316730 316952 -150466601 + L1ME2 LINE L1 5604 5845 -321 1907 194 49 61 chr11 316952 317463 -150466090 + MLT1D LTR MaLR 1 505 0 973 220 43 134 chr11 317463 317838 -150465715 + L1ME2 LINE L1 5845 6139 -27 1028 208 81 0 chr11 317850 318071 -150465482 - Tigger3(Golem) DNA MER2_type 0 3038 2800 394 311 0 0 chr11 318084 318187 -150465366 - Tigger3(Golem) DNA MER2_type -2894 135 33 1850 167 0 16 chr11 318209 318526 -150465027 + AluJo SINE Alu 1 312 0 1897 160 82 3 chr11 319222 319578 -150463975 + MLT1B LTR MaLR 1 384 -6 1506 248 111 15 chr11 320715 321174 -150462379 - MLT1D LTR MaLR 0 505 3 279 226 0 59 chr11 323840 323942 -150459611 + L2 LINE L2 3139 3234 -38 189 237 68 0 chr11 324748 324807 -150458746 - MIR SINE MIR -92 170 108 299 247 67 11 chr11 324873 324962 -150458591 - MIR SINE MIR -92 170 77 207 272 19 76 chr11 326066 326224 -150457329 + (CACCC)n Simple_repeat Simple_repeat 1 149 0 222 287 52 9 chr11 326455 326570 -150456983 + (CAGCC)n Simple_repeat Simple_repeat 1 120 0 1656 241 56 9 chr11 326877 327326 -150456227 + MLT1D LTR MaLR 2 471 -34 321 68 0 0 chr11 328137 328181 -150455372 + (CA)n Simple_repeat Simple_repeat 2 45 0 4998 172 31 14 chr11 328183 328567 -150454986 - L1MC2 LINE L1 -114 6230 5854 1625 170 7 3 chr11 328567 328867 -150454686 - AluJb SINE Alu -11 301 1 4998 172 31 14 chr11 328867 329509 -150454044 - L1MC2 LINE L1 -490 5854 5188 1176 252 128 48 chr11 329779 330020 -150453533 + L2 LINE L2 1824 2044 -1270 2051 122 20 0 chr11 330020 330324 -150453229 - AluSx SINE Alu -2 310 1 1176 252 128 48 chr11 330324 330709 -150452844 + L2 LINE L2 2044 2500 -814 4779 92 22 15 chr11 330709 330869 -150452684 - LTR8 LTR ERV1 0 691 534 647 83 0 21 chr11 330869 331003 -150452550 - L1PA6 LINE L1 0 6154 6060 4779 92 22 15 chr11 331003 331527 -150452026 - LTR8 LTR ERV1 -157 534 2 269 246 14 0 chr11 331531 331600 -150451953 + L2 LINE L2 2497 2566 -748 2017 113 3 0 chr11 331740 332031 -150451522 + AluSq SINE Alu 2 293 -20 197 346 13 13 chr11 332235 332313 -150451240 + L2 LINE L2 3234 3311 -2 302 246 0 0 chr11 333157 333222 -150450331 - L2 LINE L2 -3 3310 3246 223 292 0 0 chr11 334117 334165 -150449388 + L2 LINE L2 3003 3050 -263 844 87 46 9 chr11 335130 335350 -150448203 + (TCCA)n Simple_repeat Simple_repeat 1 228 0 922 103 50 0 chr11 335368 335826 -150447727 + (TCCA)n Simple_repeat Simple_repeat 1 480 0 202 231 0 0 chr11 336298 336337 -150447216 + T-rich Low_complexity Low_complexity 2 40 0 1274 227 94 6 chr11 336592 336922 -150446631 - MLT1A1 LTR MaLR -6 359 1 1471 286 91 20 chr11 337354 337517 -150446036 + L2 LINE L2 2036 2186 -1128 2013 140 81 69 chr11 337517 337939 -150445614 - MSTA LTR MaLR -1 427 1 1471 286 91 20 chr11 337939 338352 -150445201 + L2 LINE L2 2186 2667 -647 2311 107 0 0 chr11 338352 338660 -150444893 - AluSg SINE Alu -2 308 1 1471 286 91 20 chr11 338660 338739 -150444814 + L2 LINE L2 2667 2739 -575 598 264 78 103 chr11 338784 339281 -150444272 + L2 LINE L2 2827 3311 -2 503 274 73 6 chr11 339559 339596 -150443957 + L2 LINE L2 2422 2455 -859 2315 72 23 7 chr11 339596 339901 -150443652 - AluSg SINE Alu 0 310 1 503 274 73 6 chr11 339901 340027 -150443526 + L2 LINE L2 2455 2596 -718 425 215 0 0 chr11 340246 340325 -150443228 + Tigger5 DNA MER2_type 1 79 -2244 335 274 0 0 chr11 340380 340453 -150443100 + Tigger5 DNA MER2_type 2248 2320 -3 735 291 34 17 chr11 341057 341291 -150442262 - MIR SINE MIR -24 238 1 397 333 60 34 chr11 341356 341623 -150441930 + L1M4 LINE L1 4296 4569 -1577 658 107 76 0 chr11 341822 342158 -150441395 + (CACTC)n Simple_repeat Simple_repeat 1 361 0 254 323 10 0 chr11 342244 342343 -150441210 + (TCCA)n Simple_repeat Simple_repeat 1 100 0 655 271 60 35 chr11 342872 343156 -150440397 - L1MC4 LINE L1 -1 8041 7751 274 331 57 32 chr11 344244 344401 -150439152 + MIR SINE MIR 80 240 -22 218 273 0 0 chr11 346216 346271 -150437282 + L2 LINE L2 3259 3313 0 980 162 0 0 chr11 346442 346596 -150436957 + AluJb SINE Alu 147 300 -12 513 188 12 6 chr11 346642 346807 -150436746 + (TG)n Simple_repeat Simple_repeat 1 166 0 242 221 0 44 chr11 346811 346879 -150436674 + (TATG)n Simple_repeat Simple_repeat 4 68 0 346 240 17 17 chr11 346902 347081 -150436472 + (TG)n Simple_repeat Simple_repeat 2 180 0 461 225 17 6 chr11 347121 347299 -150436254 + (TG)n Simple_repeat Simple_repeat 1 180 0 562 183 25 18 chr11 347317 347760 -150435793 + (TG)n Simple_repeat Simple_repeat 1 446 0 288 279 66 20 chr11 348316 348513 -150435040 + L1MEc LINE L1 1277 1482 -4914 728 142 15 0 chr11 348755 348889 -150434664 - MER4D LTR ERV1 -13 890 755 773 197 0 15 chr11 348894 349031 -150434522 - AluJo SINE Alu -177 135 1 949 146 32 5 chr11 349031 349216 -150434337 - MER4D LTR ERV1 -133 739 550 989 51 0 0 chr11 349223 349340 -150434213 + AluSx SINE Alu 16 132 -180 383 277 0 43 chr11 349351 349445 -150434108 + L1MC4 LINE L1 6614 6703 -1339 * 386 240 0 62 chr11 349385 349481 -150434072 - L1MC4 LINE L1 -1339 6703 6614 * 423 251 4 24 chr11 349460 349586 -150433967 - L1MCa LINE L1 -1339 6983 1995 239 255 0 0 chr11 349590 349637 -150433916 + (TATATG)n Simple_repeat Simple_repeat 4 50 0 1394 93 0 0 chr11 349637 349819 -150433734 + AluSx SINE Alu 123 304 -6 920 170 6 11 chr11 349846 350028 -150433525 - MER4D LTR ERV1 -463 409 229 428 221 71 0 chr11 350073 350213 -150433340 - MER4D LTR ERV1 -753 150 1 21 0 0 0 chr11 350495 350516 -150433037 + GC_rich Low_complexity Low_complexity 1 21 0 212 182 0 18 chr11 350536 350591 -150432962 + (CCCCG)n Simple_repeat Simple_repeat 5 58 0 312 296 29 48 chr11 352835 353041 -150430512 - L2 LINE L2 -822 2492 2291 301 189 0 95 chr11 359801 359970 -150423583 + CT-rich Low_complexity Low_complexity 3 155 0 312 163 0 56 chr11 359997 360157 -150423396 + (TCCA)n Simple_repeat Simple_repeat 2 152 0 234 0 0 0 chr11 360580 360606 -150422947 + (CTGGGG)n Simple_repeat Simple_repeat 3 28 0 22 70 0 0 chr11 365378 365421 -150418132 + GC_rich Low_complexity Low_complexity 1 43 0 399 333 6 6 chr11 368073 368238 -150415315 + (TG)n Simple_repeat Simple_repeat 2 166 0 276 275 18 0 chr11 368257 368428 -150415125 + (TG)n Simple_repeat Simple_repeat 1 174 0 374 326 17 11 chr11 368509 368687 -150414866 + (TG)n Simple_repeat Simple_repeat 2 180 0 268 278 17 6 chr11 368719 369084 -150414469 + (TG)n Simple_repeat Simple_repeat 1 369 0 224 280 222 0 chr11 369687 369777 -150413776 + MIR SINE MIR 29 137 -71 183 129 0 0 chr11 369888 369919 -150413634 + (TCCA)n Simple_repeat Simple_repeat 2 32 0 692 146 0 0 chr11 370609 370719 -150412834 + AluSg/x SINE Alu 200 309 -1 334 162 34 179 chr11 370719 370836 -150412717 + L1MD1 LINE L1 3185 3284 -2862 803 75 37 0 chr11 370845 370952 -150412601 - AluSq/x SINE Alu -201 111 1 1055 269 0 7 chr11 370954 371236 -150412317 + L1MC1 LINE L1 6039 6318 -15 1159 247 36 50 chr11 371257 371531 -150412022 + L1MD1 LINE L1 4397 4662 -1484 4829 35 0 9 chr11 371531 372102 -150411451 + L1PA5 LINE L1 5589 6154 0 1159 247 36 50 chr11 372102 372329 -150411224 + L1MD1 LINE L1 4662 4891 -1255 764 287 81 12 chr11 372335 372656 -150410897 - MLT1A1 LTR MaLR -17 348 6 515 246 16 26 chr11 372662 372853 -150410700 + L1MD1 LINE L1 4889 5077 -1069 778 227 68 0 chr11 373203 373410 -150410143 + L1M4b LINE L1 94 314 -6545 1557 197 34 151 chr11 373410 374081 -150409472 - LTR8A LTR ERV1 0 727 135 3059 188 85 26 chr11 374087 374955 -150408598 + LTR28 LTR ERV1 1 1020 0 392 232 0 42 chr11 374955 375049 -150408504 - LTR8 LTR ERV1 -572 119 30 2250 265 53 19 chr11 375063 375817 -150407736 + L1M4b LINE L1 311 1090 -5769 1164 220 39 16 chr11 375928 376237 -150407316 + L1MD1 LINE L1 5672 5987 -255 942 189 31 15 chr11 376244 376440 -150407113 + L1MD1 LINE L1 6044 6242 0 1309 303 69 9 chr11 376446 377023 -150406530 + L1MEc LINE L1 31 642 -5754 1183 22 0 0 chr11 377079 377213 -150406340 + AluY SINE Alu 1 134 -177 2494 58 0 0 chr11 377213 377521 -150406032 + AluY SINE Alu 1 308 -3 1082 247 164 0 chr11 377524 377897 -150405656 + L1MEc LINE L1 2673 3106 -3109 1017 199 11 5 chr11 377904 378090 -150405463 + AluJo SINE Alu 1 187 -125 973 305 74 41 chr11 378250 378316 -150405237 - L1MCc LINE L1 -4889 1534 1472 2216 117 0 0 chr11 378316 378624 -150404929 - AluSg SINE Alu -2 308 1 973 305 74 41 chr11 378624 379001 -150404552 - L1MCc LINE L1 -4951 1472 1067 2133 113 0 7 chr11 379001 379302 -150404251 - AluSg SINE Alu -11 299 1 973 305 74 41 chr11 379302 379398 -150404155 - L1MCc LINE L1 -5356 1067 976 273 214 0 18 chr11 379399 379455 -150404098 - L2 LINE L2 -1 3312 3258 21 0 0 0 chr11 379911 379932 -150403621 + AT_rich Low_complexity Low_complexity 1 21 0 2055 135 0 3 chr11 379945 380248 -150403305 + AluSq SINE Alu 1 302 -11 251 282 96 5 chr11 380261 380449 -150403104 + L1M4 LINE L1 4490 4694 -1452 314 340 105 0 chr11 380466 380628 -150402925 + L1M4 LINE L1 4640 4818 -1328 403 356 104 13 chr11 380913 381143 -150402410 + L1M4 LINE L1 5091 5341 -805 287 96 0 58 chr11 381503 381555 -150401998 - AluSp SINE Alu -134 169 121 845 145 8 0 chr11 381579 381703 -150401850 - AluSq/x SINE Alu -187 125 1 340 336 109 51 chr11 381823 381840 -150401713 - L1M4 LINE L1 -1949 4197 4182 2127 129 3 0 chr11 381840 382150 -150401403 - AluSx SINE Alu -1 311 1 340 336 109 51 chr11 382150 382444 -150401109 - L1M4 LINE L1 -1964 4182 3868 254 306 19 28 chr11 384223 384331 -150399222 - LTR16C LTR ERVL 0 491 385 510 226 30 0 chr11 384696 384829 -150398724 + GA-rich Low_complexity Low_complexity 2 138 0 504 168 0 0 chr11 384831 384932 -150398621 + (CAGAGA)n Simple_repeat Simple_repeat 2 102 0 1202 183 9 5 chr11 384944 385168 -150398385 - LTR55 LTR ERV -322 226 2 253 250 37 56 chr11 386989 387097 -150396456 + MLT1A1 LTR MaLR 51 156 -209 547 281 0 0 chr11 387109 387244 -150396309 - MLT-int LTR MaLR -1315 420 286 778 100 9 0 chr11 387245 387355 -150396198 + AluJb SINE Alu 1 111 -201 982 163 6 0 chr11 387440 387600 -150395953 + AluJb SINE Alu 135 295 -17 1030 202 59 29 chr11 387600 387872 -150395681 - MLT-int LTR MaLR -1440 295 16 617 234 24 0 chr11 387929 388096 -150395457 + MLT1A1 LTR MaLR 186 356 -9 1157 206 45 86 chr11 388611 388970 -150394583 + MLT2D LTR ERVL 21 364 -50 322 358 86 55 chr11 388999 389256 -150394297 - L1MC4 LINE L1 -1339 6703 6439 * 327 300 25 69 chr11 389099 389259 -150394294 + L1MCa LINE L1 1915 2067 -4359 25 23 0 23 chr11 389264 389283 -150394270 + AT_rich Low_complexity Low_complexity 1 19 -23 2091 117 3 0 chr11 389283 389573 -150393980 - AluSx SINE Alu -21 291 1 25 23 0 23 chr11 389573 389596 -150393957 + AT_rich Low_complexity Low_complexity 19 42 0 2225 56 40 10 chr11 391048 391403 -150392150 - AluY SINE Alu 0 364 1 207 0 0 0 chr11 391588 391611 -150391942 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 373 187 107 0 chr11 391751 391901 -150391652 + (CACAC)n Simple_repeat Simple_repeat 5 170 0 290 133 107 0 chr11 391913 392063 -150391490 + (CACAC)n Simple_repeat Simple_repeat 5 170 0 229 144 106 0 chr11 392111 392243 -150391310 + (CACAC)n Simple_repeat Simple_repeat 5 150 0 247 151 107 0 chr11 392255 392414 -150391139 + (CACAC)n Simple_repeat Simple_repeat 5 180 0 338 186 16 81 chr11 392442 392566 -150390987 + MLT2D LTR ERVL 293 408 -6 479 143 0 20 chr11 393640 393738 -150389815 + LTR52 LTR ERVL 1 96 -325 381 248 48 0 chr11 393864 393989 -150389564 + LTR52 LTR ERVL 288 418 -3 2124 117 0 0 chr11 393997 394325 -150389228 - AluSx SINE Alu 0 312 1 21 57 0 0 chr11 396074 396109 -150387444 + GC_rich Low_complexity Low_complexity 1 35 0 572 167 0 16 chr11 398325 398451 -150385102 + CT-rich Low_complexity Low_complexity 4 127 0 1335 293 47 11 chr11 398469 398911 -150384642 - L1MB3 LINE L1 -28 6155 5688 1474 221 168 20 chr11 398911 399309 -150384244 - MSTB2 LTR MaLR 0 457 1 1335 293 47 11 chr11 399309 399415 -150384138 - L1MB3 LINE L1 -495 5688 5587 295 329 16 36 chr11 399448 399700 -150383853 + MLT1J LTR MaLR 232 478 -33 181 291 87 19 chr11 402886 402989 -150380564 + L2 LINE L2 3161 3270 -2 26 0 0 0 chr11 404484 404510 -150379043 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr11 404670 404692 -150378861 + GC_rich Low_complexity Low_complexity 1 22 0 256 348 39 0 chr11 405716 405855 -150377698 - MIR SINE MIR -60 148 43 286 293 69 0 chr11 406132 406248 -150377305 + MER45A DNA AcHobo 55 178 0 269 55 16 142 chr11 407018 407201 -150376352 + (TCCTG)n Simple_repeat Simple_repeat 5 164 0 201 75 0 149 chr11 407256 407457 -150376096 + (TCCTG)n Simple_repeat Simple_repeat 1 171 0 284 85 0 144 chr11 407493 407611 -150375942 + (TCCTG)n Simple_repeat Simple_repeat 1 101 0 1177 227 70 23 chr11 407829 408217 -150375336 + MLT1C LTR MaLR 61 466 -1 210 37 0 0 chr11 409451 409478 -150374075 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3374 98 31 2 chr11 409478 409955 -150373598 - L1PA13 LINE L1 -13 6150 5660 1226 169 0 49 chr11 409955 410144 -150373409 + L1P LINE L1 3758 3932 -2214 2179 93 0 35 chr11 410144 410338 -150373215 - AluSx SINE Alu -11 301 121 2435 66 0 10 chr11 410338 410641 -150372912 - AluY SINE Alu -10 301 2 2179 93 0 35 chr11 410641 410758 -150372795 - AluSx SINE Alu -191 121 1 1226 169 0 49 chr11 410758 410834 -150372719 + L1P LINE L1 3932 4010 -2136 201 353 88 24 chr11 411005 411175 -150372378 - MIR SINE MIR -68 194 14 784 282 60 19 chr11 412071 412387 -150371166 - L1ME3A LINE L1 -6 6164 5836 347 328 33 61 chr11 412454 412634 -150370919 + L1MEd LINE L1 649 823 -5707 629 323 37 21 chr11 412650 413025 -150370528 + L1MEd LINE L1 780 1160 -5370 347 306 153 0 chr11 413179 413323 -150370230 + L1MEd LINE L1 2077 2242 -4298 981 278 65 10 chr11 413411 413796 -150369757 + L1MEd LINE L1 3563 3968 -2572 332 239 0 0 chr11 413847 413914 -150369639 + L1M4 LINE L1 3130 3196 -2950 8097 68 12 4 chr11 415457 416456 -150367097 - LTR13 LTR ERVK 0 1007 1 232 105 0 58 chr11 417773 417859 -150365694 + (GGGTG)n Simple_repeat Simple_repeat 5 85 0 380 156 0 39 chr11 417892 418071 -150365482 + (GGGTG)n Simple_repeat Simple_repeat 1 172 0 301 304 65 0 chr11 418218 418356 -150365197 + MER90 LTR ERV1 103 249 -326 227 264 214 0 chr11 418401 418583 -150364970 + MER90 LTR ERV1 344 564 -11 369 313 23 23 chr11 419620 419751 -150363802 - L2 LINE L2 -3 3310 3180 1901 133 59 0 chr11 420738 421024 -150362529 - AluSq SINE Alu -10 303 1 1802 200 99 16 chr11 421274 421310 -150362243 - MER45R DNA AcHobo -39 1542 1510 1980 157 0 0 chr11 421310 421615 -150361938 + AluSg SINE Alu 1 305 -5 1802 200 99 16 chr11 421615 422142 -150361411 - MER45R DNA AcHobo -71 1510 932 1976 223 80 62 chr11 422142 422271 -150361282 - L1MC3 LINE L1 -21 7764 7639 1986 116 4 0 chr11 422271 422548 -150361005 + AluSx SINE Alu 1 278 -34 207 0 0 0 chr11 422554 422577 -150360976 + (CTAAA)n Simple_repeat Simple_repeat 3 25 0 1976 223 80 62 chr11 422577 422588 -150360965 - L1MC3 LINE L1 -150 7635 7626 2177 127 0 0 chr11 422588 422896 -150360657 + AluSx SINE Alu 1 308 -4 1976 223 80 62 chr11 422896 423459 -150360094 - L1MC3 LINE L1 -159 7626 7040 808 153 0 0 chr11 423459 423583 -150359970 - AluSg/x SINE Alu 0 312 189 947 175 24 101 chr11 423583 423921 -150359632 - L1MC3 LINE L1 -742 7043 6732 2824 148 18 4 chr11 423964 424478 -150359075 + LTR43 LTR ERV1 1 521 -81 723 119 90 0 chr11 424468 424602 -150358951 + MER51B LTR ERV1 229 374 -3 * 947 217 83 0 chr11 425235 425475 -150358078 - MLT1C LTR MaLR 0 467 208 2619 153 12 12 chr11 425475 425892 -150357661 + L1PA15 LINE L1 5744 6160 -5 244 204 0 0 chr11 428255 428304 -150355249 - MER53 DNA DNA 0 189 141 24 32 0 0 chr11 429463 429494 -150354059 + AT_rich Low_complexity Low_complexity 1 31 0 216 86 0 0 chr11 430062 430097 -150353456 + (TC)n Simple_repeat Simple_repeat 1 35 0 423 239 193 6 chr11 430097 430273 -150353280 + MLT1F LTR MaLR 170 378 -164 2073 142 0 3 chr11 430329 430640 -150352913 + AluJo SINE Alu 1 310 -2 245 392 0 0 chr11 430757 430877 -150352676 + L1M4 LINE L1 3797 3916 -2230 383 323 63 67 chr11 431137 431360 -150352193 + L1MC5 LINE L1 2176 2397 -4029 1673 151 33 27 chr11 431463 431800 -150351753 - MER1B DNA MER1_type 0 339 1 642 371 80 42 chr11 431988 432602 -150350951 - HAL1b LINE L1 -656 692 56 2103 129 0 3 chr11 432750 433061 -150350492 + AluSx SINE Alu 1 310 -2 2554 42 0 10 chr11 433772 434085 -150349468 - AluY SINE Alu -1 310 1 2452 70 0 0 chr11 434296 434596 -150348957 - AluY SINE Alu -11 300 1 225 197 128 0 chr11 435339 435456 -150348097 + (CTGGGG)n Simple_repeat Simple_repeat 5 136 0 1696 62 0 22 chr11 436404 436629 -150346924 - AluY SINE Alu -7 304 85 656 217 96 28 chr11 437039 437355 -150346198 + L1MC5 LINE L1 3176 7483 -758 655 292 13 14 chr11 437474 437794 -150345759 + MLT1I LTR MaLR 53 405 -4 2367 77 0 22 chr11 438173 438485 -150345068 - AluY SINE Alu -6 305 1 1408 81 0 41 chr11 439513 439710 -150343843 + AluY SINE Alu 106 294 -17 1673 177 0 4 chr11 439726 440024 -150343529 + AluJo SINE Alu 13 309 0 821 152 0 22 chr11 440062 440200 -150343353 - FLAM_A SINE Alu 0 142 8 372 235 61 0 chr11 440373 440471 -150343082 + MLT2B1 LTR ERVL 383 486 -34 354 188 0 0 chr11 440504 440605 -150342948 + (TATG)n Simple_repeat Simple_repeat 2 102 0 675 174 0 0 chr11 440633 440811 -150342742 + (TATG)n Simple_repeat Simple_repeat 3 180 0 216 0 0 0 chr11 440812 440836 -150342717 + (TCTA)n Simple_repeat Simple_repeat 4 27 0 844 289 222 0 chr11 440865 441284 -150342269 + L2 LINE L2 2038 2549 -765 3129 197 76 54 chr11 441427 442431 -150341122 - L1MD1 LINE L1 0 6242 5221 1586 205 20 0 chr11 442449 442752 -150340801 - AluJb SINE Alu 0 312 4 340 177 0 0 chr11 442901 442963 -150340590 + MLT1I LTR MaLR 347 408 -1 299 162 0 29 chr11 443037 443081 -150340472 - MLT2B1 LTR ERVL 0 520 477 182 88 0 29 chr11 443081 443115 -150340438 + (TAGA)n Simple_repeat Simple_repeat 1 33 0 299 162 0 29 chr11 443115 443138 -150340415 - MLT2B1 LTR ERVL -43 477 455 209 111 28 0 chr11 443140 443176 -150340377 + (TAGA)n Simple_repeat Simple_repeat 4 40 0 301 145 53 92 chr11 443177 443253 -150340300 + L1MC3 LINE L1 6571 6643 -1142 920 128 7 0 chr11 443255 443527 -150340026 + (TAGA)n Simple_repeat Simple_repeat 1 274 0 1654 189 126 2 chr11 443549 443977 -150339576 - MLT2B1 LTR ERVL -39 481 1 996 280 106 29 chr11 444404 444679 -150338874 + L1ME2 LINE L1 4607 4859 -1287 216 0 0 0 chr11 444679 444703 -150338850 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2067 117 4 0 chr11 444706 444989 -150338564 - AluSx SINE Alu -30 282 1 996 280 106 29 chr11 444989 445305 -150338248 + L1ME2 LINE L1 4860 5248 -898 256 174 14 14 chr11 445305 445374 -150338179 + (TA)n Simple_repeat Simple_repeat 2 70 0 1209 292 49 17 chr11 445398 445929 -150337624 + L1ME2 LINE L1 5254 5801 -363 2034 172 86 21 chr11 445945 446376 -150337177 + LTR2B LTR ERV1 32 490 0 1226 104 21 16 chr11 446394 446587 -150336966 + AluJb SINE Alu 117 310 -2 460 276 163 9 chr11 446621 446842 -150336711 + L1ME2 LINE L1 5873 6127 -37 634 109 0 0 chr11 446842 446943 -150336610 + FRAM SINE Alu 66 166 -10 2164 106 18 0 chr11 446949 447232 -150336321 + AluSx SINE Alu 3 290 -22 25 40 0 20 chr11 447260 447280 -150336273 + AT_rich Low_complexity Low_complexity 1 20 -29 2227 115 0 7 chr11 447280 447575 -150335978 + AluSq SINE Alu 1 293 -20 25 40 0 20 chr11 447575 447604 -150335949 + AT_rich Low_complexity Low_complexity 20 49 0 205 186 0 0 chr11 447951 447994 -150335559 + T-rich Low_complexity Low_complexity 2 44 0 202 361 0 0 chr11 448919 449088 -150334465 + (CTG)n Simple_repeat Simple_repeat 3 171 0 1250 125 0 0 chr11 449818 449986 -150333567 - AluSg SINE Alu -142 168 1 2673 58 0 0 chr11 450290 450601 -150332952 + AluY SINE Alu 1 311 0 2323 99 0 10 chr11 450944 451257 -150332296 + AluY SINE Alu 1 310 -1 276 186 12 23 chr11 452285 452371 -150331182 + GA-rich Low_complexity Low_complexity 2 86 0 244 333 14 0 chr11 452569 452641 -150330912 - LTR40c LTR ERVL 0 465 393 345 270 107 6 chr11 454653 454812 -150328741 + L1MD2 LINE L1 4597 4771 -1375 715 154 8 15 chr11 454824 454954 -150328599 + FLAM_C SINE Alu 5 133 0 22 0 0 0 chr11 454954 454976 -150328577 + AT_rich Low_complexity Low_complexity 1 22 0 2324 113 3 0 chr11 455193 455504 -150328049 + AluSx SINE Alu 1 312 0 1119 144 0 28 chr11 455504 455684 -150327869 + AluSg/x SINE Alu 132 306 -4 2392 262 72 43 chr11 455686 456903 -150326650 + L1MD2 LINE L1 4982 6234 -8 243 287 87 9 chr11 456926 457041 -150326512 + L1MC4a LINE L1 5895 6018 -1790 23 33 0 0 chr11 457090 457120 -150326433 + AT_rich Low_complexity Low_complexity 1 30 0 21 57 0 0 chr11 457791 457826 -150325727 + GC_rich Low_complexity Low_complexity 1 35 0 409 218 26 13 chr11 460254 460410 -150323143 + CT-rich Low_complexity Low_complexity 2 159 0 378 305 142 4 chr11 460519 460758 -150322795 - L1M4 LINE L1 -1559 4587 4316 * 2877 236 61 37 chr11 460753 461622 -150321931 - L1MB8 LINE L1 -1 6177 5288 2206 300 103 3 chr11 461621 461761 -150321792 - L1M4 LINE L1 -1818 4328 4203 * 189 0 0 0 chr11 461761 461782 -150321771 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 2206 300 103 3 chr11 461782 462660 -150320893 - L1M4 LINE L1 -1943 4203 3208 189 0 0 0 chr11 463005 463026 -150320527 + (CA)n Simple_repeat Simple_repeat 2 22 0 348 301 68 37 chr11 463699 463862 -150319691 + L1M4 LINE L1 2760 2927 -3219 1831 264 58 72 chr11 463960 465091 -150318462 - L1M4 LINE L1 -800 5346 4232 429 334 17 16 chr11 465062 465375 -150318178 - L1MDb LINE L1 -5007 1580 1228 * 538 113 0 0 chr11 465435 465515 -150318038 - AluJ/FRAM SINE Alu -17 295 216 4013 249 32 7 chr11 465617 466758 -150316795 + L1M4 LINE L1 3222 4391 -1755 24 53 0 0 chr11 466891 466929 -150316624 + AT_rich Low_complexity Low_complexity 1 38 0 1502 156 81 0 chr11 466975 467282 -150316271 - MER44D DNA MER2_type -3 606 5 23 33 0 0 chr11 467283 467313 -150316240 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr11 467451 467479 -150316074 + AT_rich Low_complexity Low_complexity 1 28 0 2241 99 0 3 chr11 467724 468008 -150315545 + AluSc SINE Alu 1 283 -26 342 0 0 0 chr11 468016 468054 -150315499 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 1770 141 24 24 chr11 468307 468480 -150315073 - L1MC/D LINE L1 -772 5587 5412 2509 206 55 67 chr11 468480 469207 -150314346 - MER72 LTR ERV1 0 722 5 1770 141 24 24 chr11 469207 469367 -150314186 - L1MC/D LINE L1 -946 5413 5254 1903 260 43 17 chr11 469819 470523 -150313030 + L1M4 LINE L1 2685 3406 -2740 2583 124 142 0 chr11 470626 471071 -150312482 + Tigger3(Golem) DNA MER2_type 2520 3027 -2 184 304 69 0 chr11 472476 472578 -150310975 - MIR SINE MIR -127 135 27 2060 120 10 20 chr11 473098 473399 -150310154 - AluJb SINE Alu -14 298 1 2384 106 0 0 chr11 473716 474017 -150309536 - AluY SINE Alu -10 301 1 919 146 22 6 chr11 474607 474785 -150308768 + L1MB4 LINE L1 5994 6174 -6 563 230 0 24 chr11 474807 474933 -150308620 + FLAM_C SINE Alu 1 123 -10 2421 71 3 0 chr11 474942 475236 -150308317 + AluY SINE Alu 1 295 -16 21 36 0 0 chr11 476945 476973 -150306580 + AT_rich Low_complexity Low_complexity 1 28 0 2222 122 3 0 chr11 477007 477301 -150306252 - AluSx SINE Alu -15 297 3 1007 125 0 0 chr11 477302 477438 -150306115 - AluSq/x SINE Alu -176 136 1 2513 135 37 23 chr11 478316 478752 -150304801 + MER83 LTR ERV1 1 442 -6 320 310 99 0 chr11 478752 478894 -150304659 + L1MC/D LINE L1 5443 5598 -2210 1938 234 23 41 chr11 479569 479673 -150303880 - L1MA9 LINE L1 -37 6275 6171 180 0 0 0 chr11 479673 479693 -150303860 + (TC)n Simple_repeat Simple_repeat 2 21 0 1938 234 23 41 chr11 479693 480100 -150303453 - L1MA9 LINE L1 -141 6171 5773 297 217 0 0 chr11 480097 480157 -150303396 + L1MA9 LINE L1 5933 5992 -320 * 2527 70 0 3 chr11 480379 480691 -150302862 - AluY SINE Alu 0 311 1 466 220 46 0 chr11 480691 480800 -150302753 + MLT1A2 LTR MaLR 260 373 -1 369 0 0 0 chr11 481022 481063 -150302490 + (TG)n Simple_repeat Simple_repeat 1 41 0 227 295 54 6 chr11 482329 482495 -150301058 - L1MEc LINE L1 -4092 2515 2342 1994 157 3 6 chr11 482754 483066 -150300487 - AluJo SINE Alu -1 311 1 982 166 0 13 chr11 483426 483583 -150299970 - FRAM SINE Alu -22 154 1 1911 154 71 6 chr11 487088 487439 -150296114 - MSTB LTR MaLR 0 426 53 4010 137 4 46 chr11 487439 488291 -150295262 + L1PA16 LINE L1 5372 6161 -2 433 248 6 31 chr11 488287 488448 -150295105 - L1M4 LINE L1 -864 5282 5126 * 348 307 0 0 chr11 489740 489890 -150293663 + (CA)n Simple_repeat Simple_repeat 2 151 0 21 89 0 0 chr11 491954 492010 -150291543 + GC_rich Low_complexity Low_complexity 1 56 0 25 31 0 0 chr11 492116 492148 -150291405 + GC_rich Low_complexity Low_complexity 1 32 0 37 97 0 0 chr11 492194 492308 -150291245 + GC_rich Low_complexity Low_complexity 1 114 0 207 139 0 0 chr11 492308 492344 -150291209 + (CCG)n Simple_repeat Simple_repeat 3 38 0 27 96 0 0 chr11 492358 492441 -150291112 + GC_rich Low_complexity Low_complexity 1 83 0 216 0 0 0 chr11 495082 495106 -150288447 + (CTGGGG)n Simple_repeat Simple_repeat 6 29 0 2123 113 0 0 chr11 495555 495838 -150287715 + AluSx SINE Alu 1 283 -29 302 241 17 0 chr11 495842 495900 -150287653 + L1MCa LINE L1 2006 2064 -4362 * 432 223 10 26 chr11 495860 495963 -150287590 - L1MEc LINE L1 -1339 6983 1995 348 293 38 0 chr11 495942 496048 -150287505 - L1MEc LINE L1 -4358 2068 1959 * 309 348 11 0 chr11 495991 496080 -150287473 + L1MC4 LINE L1 6614 6703 -1339 * 827 193 13 13 chr11 496083 496233 -150287320 - AluJb SINE Alu -23 289 140 226 344 98 8 chr11 496886 497008 -150286545 + L2 LINE L2 2917 3049 -223 183 339 31 0 chr11 497610 497675 -150285878 + MIR SINE MIR 18 84 -124 193 279 136 61 chr11 497725 497872 -150285681 + MER5A DNA MER1_type 5 162 -27 * 245 323 114 0 chr11 497756 497897 -150285656 - MER5A DNA MER1_type -22 167 1 237 59 0 0 chr11 498202 498236 -150285317 + MLT1C LTR MaLR 107 140 -327 308 194 74 19 chr11 498262 498370 -150285183 + MLT1C LTR MaLR 302 415 -52 608 38 0 12 chr11 498374 498454 -150285099 + (TTCC)n Simple_repeat Simple_repeat 3 81 0 2007 132 0 3 chr11 498457 498761 -150284792 - AluSx SINE Alu -3 309 7 21 36 0 0 chr11 500139 500167 -150283386 + GC_rich Low_complexity Low_complexity 1 28 0 2096 80 21 11 chr11 501858 502145 -150281408 + AluSq SINE Alu 8 297 -16 781 187 42 37 chr11 502152 502366 -150281187 + L1MB3 LINE L1 5967 6181 -2 183 80 0 0 chr11 502916 502941 -150280612 + (CCGAG)n Simple_repeat Simple_repeat 5 29 0 21 89 0 0 chr11 504887 504943 -150278610 + GC_rich Low_complexity Low_complexity 1 56 0 341 236 7 0 chr11 505124 505272 -150278281 + (CA)n Simple_repeat Simple_repeat 1 149 0 366 252 78 9 chr11 505277 505392 -150278161 + L1MA9 LINE L1 6152 6274 -38 285 263 93 85 chr11 506073 506320 -150277233 + SN5 Other centromeric 1 249 -206 367 74 19 0 chr11 506617 506671 -150276882 + L1MC1 LINE L1 6276 6330 -3 404 340 28 49 chr11 506695 506942 -150276611 - L3 LINE CR1 -541 1036 795 1363 97 5 0 chr11 507135 507364 -150276189 - AluSg/x SINE Alu 0 324 95 279 277 29 36 chr11 507618 507755 -150275798 + MLT1A2 LTR MaLR 239 374 0 787 198 74 33 chr11 507961 508204 -150275349 + MLT1B LTR MaLR 8 260 -130 506 236 202 55 chr11 508514 508806 -150274747 - MLT1J LTR MaLR -141 370 36 224 224 0 20 chr11 508807 508856 -150274697 + GA-rich Low_complexity Low_complexity 4 51 0 2023 122 28 0 chr11 509024 509312 -150274241 - AluSq SINE Alu -17 296 1 2040 116 41 0 chr11 509312 509605 -150273948 - AluSx SINE Alu -7 305 1 325 282 30 0 chr11 510018 510120 -150273433 - MIR SINE MIR -63 145 50 658 109 0 0 chr11 510535 510627 -150272926 - AluSp/q SINE Alu -12 301 210 243 0 0 0 chr11 511148 511175 -150272378 + (CAG)n Simple_repeat Simple_repeat 2 28 0 234 355 0 0 chr11 511340 511433 -150272120 - MLT1J LTR MaLR -77 434 342 381 246 131 0 chr11 511752 511882 -150271671 + LTR67 LTR ERVL 410 556 -1 1211 190 5 0 chr11 512230 512441 -150271112 + AluJo SINE Alu 1 212 -100 255 61 0 0 chr11 513442 513475 -150270078 + (GGGA)n Simple_repeat Simple_repeat 4 36 0 671 276 24 68 chr11 513577 513791 -150269762 + L1M4 LINE L1 3106 3309 -2837 2144 139 0 0 chr11 513791 514101 -150269452 + AluSx SINE Alu 1 310 -2 671 276 24 68 chr11 514101 514136 -150269417 + L1M4 LINE L1 3309 3344 -2802 782 156 57 28 chr11 514199 514340 -150269213 + FAM SINE Alu 24 168 -17 941 101 7 0 chr11 514410 514549 -150269004 + AluSg/x SINE Alu 172 311 -1 1964 100 47 0 chr11 514567 514846 -150268707 + AluSg SINE Alu 1 292 -18 1741 128 0 0 chr11 514896 515139 -150268414 + AluSx SINE Alu 1 243 -69 1214 127 0 0 chr11 519038 519211 -150264342 + AluSp SINE Alu 130 302 -11 246 319 104 21 chr11 519522 519666 -150263887 - L1MEc LINE L1 -1892 5049 4894 688 261 55 25 chr11 520128 520475 -150263078 - L1MEc LINE L1 -3597 3344 2984 2226 120 0 3 chr11 520475 520783 -150262770 - AluSx SINE Alu -5 307 1 688 261 55 25 chr11 520783 520799 -150262754 - L1MEc LINE L1 -3957 2984 2970 484 330 35 40 chr11 520818 520856 -150262697 - L1MEc LINE L1 -4313 2809 2772 1817 185 0 0 chr11 520856 521153 -150262400 - AluJb SINE Alu -11 301 5 484 330 35 40 chr11 521153 521314 -150262239 - L1MEc LINE L1 -4350 2772 2611 2004 126 0 32 chr11 521318 521487 -150262066 - AluSg SINE Alu -10 300 144 2200 96 10 3 chr11 521487 521789 -150261764 - AluSq SINE Alu -9 304 1 2004 126 0 32 chr11 521789 521929 -150261624 - AluSg SINE Alu -166 144 1 1102 79 0 0 chr11 521932 522071 -150261482 - AluSq/x SINE Alu -174 139 1 238 305 30 8 chr11 522072 522203 -150261350 - L1MEc LINE L1 -4969 1454 1321 27 49 0 0 chr11 528128 528169 -150255384 + GC_rich Low_complexity Low_complexity 1 41 0 22 70 0 0 chr11 528288 528331 -150255222 + GC_rich Low_complexity Low_complexity 1 43 0 43 47 0 0 chr11 528415 528479 -150255074 + GC_rich Low_complexity Low_complexity 1 64 0 26 64 0 0 chr11 528545 528592 -150254961 + GC_rich Low_complexity Low_complexity 1 47 0 21 0 0 0 chr11 528696 528717 -150254836 + GC_rich Low_complexity Low_complexity 1 21 0 21 71 0 0 chr11 530647 530689 -150252864 + AT_rich Low_complexity Low_complexity 1 42 0 2179 116 0 3 chr11 531849 532151 -150251402 - AluSx SINE Alu -11 301 1 3505 107 23 16 chr11 583354 583926 -150199627 - THE1B-int LTR MaLR -93 1487 912 1243 106 98 25 chr11 583916 584161 -150199392 - THE1B-int LTR MaLR -1317 263 1 * 609 34 22 11 chr11 584161 584250 -150199303 - THE1B LTR MaLR 0 364 275 21 82 0 0 chr11 586852 586901 -150196652 + GC_rich Low_complexity Low_complexity 1 49 0 243 88 0 0 chr11 587185 587219 -150196334 + (A)n Simple_repeat Simple_repeat 1 34 0 220 262 0 0 chr11 587219 587261 -150196292 + polypurine Low_complexity Low_complexity 3 44 0 241 246 18 61 chr11 588282 588396 -150195157 + G-rich Low_complexity Low_complexity 4 112 0 265 202 238 0 chr11 593307 593391 -150190162 - L2 LINE L2 -1 3271 3168 420 335 148 32 chr11 593601 594133 -150189420 - L2 LINE L2 -462 2852 2259 379 371 38 3 chr11 594656 594814 -150188739 - L1M4 LINE L1 -773 5373 5222 1395 149 134 4 chr11 594814 594964 -150188589 - AluJo SINE Alu -16 296 167 197 0 71 0 chr11 594964 594992 -150188561 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 1395 149 134 4 chr11 594992 595103 -150188450 - AluJo SINE Alu -145 167 1 379 371 38 3 chr11 595103 595257 -150188296 - L1M4 LINE L1 -924 5222 5050 481 170 211 55 chr11 595259 595477 -150188076 - Charlie5 DNA MER1_type -27 2585 2334 295 269 59 25 chr11 595531 595650 -150187903 - L1M4 LINE L1 -1127 5019 4897 396 367 37 21 chr11 595651 595839 -150187714 - L1M4 LINE L1 -2865 3281 3091 532 265 76 5 chr11 595885 596070 -150187483 - L1M4 LINE L1 -3167 2979 2782 2232 72 0 7 chr11 599238 599557 -150183996 - AluY SINE Alu 0 311 1 1298 181 15 34 chr11 600072 600338 -150183215 - AluJo SINE Alu -22 290 30 222 167 0 51 chr11 605427 605505 -150178048 + (CCCTAA)n Simple_repeat Simple_repeat 1 74 0 319 247 6 39 chr11 605901 606126 -150177427 + (CCCCG)n Simple_repeat Simple_repeat 1 217 0 225 143 41 0 chr11 607970 608019 -150175534 + A-rich Low_complexity Low_complexity 5 55 0 1046 168 7 5 chr11 612033 612454 -150171099 + (CAGCC)n Simple_repeat Simple_repeat 1 422 0 240 257 0 40 chr11 613568 613669 -150169884 + G-rich Low_complexity Low_complexity 3 99 0 222 230 11 46 chr11 613747 613834 -150169719 + G-rich Low_complexity Low_complexity 3 86 0 240 255 205 0 chr11 622851 623012 -150160541 + MLT1F LTR MaLR 246 439 -103 255 277 50 25 chr11 624076 624195 -150159358 + MLT1B LTR MaLR 1 122 -504 275 221 101 0 chr11 624534 624639 -150158914 + MLT1B LTR MaLR 252 337 -53 180 0 0 0 chr11 626067 626087 -150157466 + (GGCTG)n Simple_repeat Simple_repeat 2 21 0 248 229 82 0 chr11 628445 628506 -150155047 + MLT1I LTR MaLR 113 178 -231 233 183 17 0 chr11 629767 629827 -150153726 + (TG)n Simple_repeat Simple_repeat 1 61 0 2123 77 24 30 chr11 630646 630943 -150152610 + AluY SINE Alu 1 295 -16 275 242 10 0 chr11 631348 631447 -150152106 + (TG)n Simple_repeat Simple_repeat 1 100 0 258 183 0 0 chr11 633212 633283 -150150270 + (TG)n Simple_repeat Simple_repeat 1 71 0 294 282 0 0 chr11 633371 633541 -150150012 + (TG)n Simple_repeat Simple_repeat 2 171 0 330 337 70 11 chr11 636809 636996 -150146557 - L2 LINE L2 -155 3117 2920 182 188 0 0 chr11 637349 637381 -150146172 + MIR SINE MIR 118 149 -113 421 325 0 13 chr11 637604 637761 -150145792 + (TG)n Simple_repeat Simple_repeat 1 155 0 379 272 4 27 chr11 637808 638351 -150145202 + (TG)n Simple_repeat Simple_repeat 1 530 0 375 303 27 0 chr11 642537 642880 -150140673 + G-rich Low_complexity Low_complexity 1 352 0 261 328 48 42 chr11 646568 646757 -150136796 + MLT1D LTR MaLR 3 192 -313 467 190 146 0 chr11 646945 647082 -150136471 + MLT1D-int LTR MaLR 1 157 -1214 1199 195 42 4 chr11 647951 648192 -150135361 - AluJo SINE Alu -32 280 31 493 238 20 137 chr11 648211 648510 -150135043 + MLT1D-int LTR MaLR 1084 1347 -24 348 254 215 52 chr11 648564 648969 -150134584 + MLT1D LTR MaLR 30 500 -5 470 197 55 24 chr11 650616 650743 -150132810 + MER20 DNA MER1_type 1 131 -88 246 192 0 0 chr11 651391 651443 -150132110 + (CACG)n Simple_repeat Simple_repeat 1 52 0 2016 132 3 10 chr11 651641 651945 -150131608 - AluSx SINE Alu -10 302 1 468 272 99 47 chr11 651945 652158 -150131395 + HAL1 LINE L1 943 1166 -1341 252 86 0 0 chr11 652560 652595 -150130958 + (CAAT)n Simple_repeat Simple_repeat 4 38 0 226 335 52 26 chr11 652731 652961 -150130592 + L1MCc LINE L1 1176 1411 -5012 452 328 129 49 chr11 654110 654395 -150129158 + L1MCc LINE L1 1670 1931 -5088 2191 110 0 0 chr11 654395 654695 -150128858 - AluSg SINE Alu -10 300 1 452 328 129 49 chr11 654695 655048 -150128505 + L1MCc LINE L1 1931 2399 -4620 348 228 44 9 chr11 655324 655438 -150128115 - Charlie1 DNA MER1_type -21 2740 2623 511 176 12 0 chr11 656061 656146 -150127407 + AluJb SINE Alu 208 293 -19 573 329 54 0 chr11 656155 656177 -150127376 + L1MB5 LINE L1 5587 5606 -568 2409 70 0 0 chr11 656177 656476 -150127077 + AluY SINE Alu 1 299 -12 573 329 54 0 chr11 656476 656788 -150126765 + L1MB5 LINE L1 5606 5939 -235 470 188 152 0 chr11 656852 656964 -150126589 + L1MB5 LINE L1 6039 6167 -7 396 212 212 44 chr11 656967 657170 -150126383 + MER97b DNA MER1_type? 106 342 -711 350 282 39 47 chr11 657332 657566 -150125987 + MER97a DNA MER1_type? 579 810 -84 343 273 68 74 chr11 664031 664207 -150119346 + L1ME4a LINE L1 5266 5440 -722 304 330 10 21 chr11 665129 665226 -150118327 + L1ME4a LINE L1 6026 6121 0 1223 142 16 0 chr11 665885 666068 -150117485 + AluJo SINE Alu 3 188 -124 441 251 139 0 chr11 666894 667109 -150116444 - HAL1 LINE L1 -800 1707 1463 465 209 25 2 chr11 667110 667229 -150116324 + MSTD LTR MaLR 1 129 -245 352 153 11 93 chr11 667230 667413 -150116140 + G-rich Low_complexity Low_complexity 5 172 0 720 218 225 11 chr11 667413 667684 -150115869 + MSTD LTR MaLR 65 393 -3 321 266 217 4 chr11 667702 667946 -150115607 - HAL1 LINE L1 -1046 1461 1166 338 331 65 22 chr11 668129 668268 -150115285 - HAL1 LINE L1 -1591 916 772 279 286 80 0 chr11 668298 668410 -150115143 + HAL1 LINE L1 1304 1424 -1083 368 289 81 0 chr11 668806 668979 -150114574 - HAL1 LINE L1 -2274 233 47 286 221 229 13 chr11 670351 670487 -150113066 + MIR SINE MIR 3 156 -52 262 247 49 37 chr11 672814 672895 -150110658 + L1M3 LINE L1 5716 5797 -366 291 295 62 18 chr11 673008 673120 -150110433 - MER5A DNA MER1_type -29 160 44 1706 176 70 0 chr11 673127 673497 -150110056 + MER57A LTR ERV1 8 403 0 901 193 85 27 chr11 674466 674689 -150108864 + AluJo SINE Alu 76 311 -1 417 250 34 45 chr11 675267 675443 -150108110 + L1MC4 LINE L1 7869 8042 0 478 365 55 41 chr11 675446 675791 -150107762 + L1MEc LINE L1 1448 1797 -4599 580 332 60 35 chr11 676176 676607 -150106946 - L1ME1 LINE L1 -192 5974 5533 812 181 18 10 chr11 677122 677359 -150106194 - L1ME1 LINE L1 -726 5436 5198 456 326 33 15 chr11 677489 677759 -150105794 - L1MEc LINE L1 -5334 1062 788 204 231 0 0 chr11 677780 677832 -150105721 + (CA)n Simple_repeat Simple_repeat 1 52 0 345 265 119 19 chr11 678208 678468 -150105085 - L1MC5 LINE L1 -177 7784 7499 308 305 53 0 chr11 678468 678563 -150104990 - L1MD3 LINE L1 -19 7976 7877 482 259 69 41 chr11 678657 678947 -150104606 - L1MC5 LINE L1 -467 7494 7197 496 202 33 47 chr11 678947 679109 -150104444 - MLT1A2 LTR MaLR -219 155 1 4285 260 101 39 chr11 679366 680787 -150102766 - L1ME2 LINE L1 0 6233 4901 2218 98 0 3 chr11 680787 681108 -150102445 + AluSq SINE Alu 1 313 0 4285 260 101 39 chr11 681108 682862 -150100691 - L1ME2 LINE L1 -1332 4901 3257 1764 136 35 3 chr11 682862 683149 -150100404 + AluSx SINE Alu 1 296 -16 4285 260 101 39 chr11 683149 683452 -150100101 - L1ME2 LINE L1 -2976 3257 649 304 384 50 28 chr11 683531 683854 -150099699 - L1ME2 LINE L1 -5831 565 236 273 329 67 6 chr11 683877 684041 -150099512 - L1ME2 LINE L1 -6222 174 1 2332 109 0 0 chr11 684159 684471 -150099082 - AluSq SINE Alu -1 312 1 283 285 41 0 chr11 684627 684799 -150098754 + (TG)n Simple_repeat Simple_repeat 2 180 0 * 307 275 17 28 chr11 684777 684955 -150098598 + (TCTCTG)n Simple_repeat Simple_repeat 1 176 0 * 380 246 47 0 chr11 684834 685005 -150098548 + (TG)n Simple_repeat Simple_repeat 2 180 0 793 251 45 30 chr11 685231 685498 -150098055 + L1MC3 LINE L1 6461 6731 -1054 1088 223 7 41 chr11 685518 685787 -150097766 - AluJo SINE Alu -52 260 1 1886 157 0 0 chr11 685817 686103 -150097450 - AluJo SINE Alu -26 286 1 2334 60 0 47 chr11 686104 686423 -150097130 - AluY SINE Alu -7 304 1 1723 294 42 6 chr11 686432 687082 -150096471 + L1MC3 LINE L1 6726 7398 -387 469 237 124 6 chr11 687087 687256 -150096297 + L1MC3 LINE L1 7589 7777 -8 217 329 0 0 chr11 690589 690674 -150092879 + (TG)n Simple_repeat Simple_repeat 1 85 0 216 200 0 0 chr11 691078 691123 -150092430 + (TG)n Simple_repeat Simple_repeat 1 45 0 254 159 29 87 chr11 691673 691742 -150091811 + MER5A DNA MER1_type 57 121 -68 196 151 55 0 chr11 694609 694682 -150088871 + C-rich Low_complexity Low_complexity 1 77 0 531 270 90 49 chr11 697586 697945 -150085608 + L1M4c LINE L1 1424 1897 -4643 247 293 55 24 chr11 698333 698497 -150085056 + L1M4c LINE L1 2365 2533 -4007 583 260 72 100 chr11 698569 698930 -150084623 - MLT1A1 LTR MaLR 0 365 15 1463 307 97 24 chr11 698964 700055 -150083498 + L1M4c LINE L1 2655 3825 -2715 256 159 48 0 chr11 700064 700127 -150083426 + L1M4c LINE L1 4527 4592 -1948 699 201 8 0 chr11 700142 700276 -150083277 + Tigger7 DNA MER2_type 32 166 -567 1400 202 148 24 chr11 700325 700751 -150082802 + Tigger7 DNA MER2_type 262 740 -1747 611 178 65 0 chr11 700778 700885 -150082668 + FLAM_A SINE Alu 2 115 -18 597 203 8 0 chr11 700909 701032 -150082521 + Tigger7 DNA MER2_type 2364 2487 0 1263 284 72 62 chr11 701078 702248 -150081305 + L1M4c LINE L1 4662 5848 -712 287 179 90 0 chr11 705956 706023 -150077530 + MER5A DNA MER1_type 17 89 -100 406 349 0 0 chr11 710053 710228 -150073325 + G-rich Low_complexity Low_complexity 2 176 0 25 102 0 0 chr11 715769 715857 -150067696 + GC_rich Low_complexity Low_complexity 1 88 0 38 96 0 0 chr11 715960 716075 -150067478 + GC_rich Low_complexity Low_complexity 1 115 0 25 51 0 0 chr11 716178 716217 -150067336 + GC_rich Low_complexity Low_complexity 1 39 0 206 168 67 34 chr11 716225 716344 -150067209 + (CCGCG)n Simple_repeat Simple_repeat 5 127 0 243 0 0 0 chr11 716429 716456 -150067097 + (CCG)n Simple_repeat Simple_repeat 1 27 0 27 0 0 0 chr11 716457 716484 -150067069 + GC_rich Low_complexity Low_complexity 1 27 0 737 108 62 31 chr11 716509 716802 -150066751 + (CCGAG)n Simple_repeat Simple_repeat 1 302 0 1537 271 70 32 chr11 719031 719691 -150063862 + L1ME1 LINE L1 3504 4188 -1958 2260 56 7 3 chr11 719692 719999 -150063554 - AluY SINE Alu 0 311 9 333 393 94 0 chr11 720202 720403 -150063150 - L1 LINE L1 -1451 4695 4476 450 137 0 0 chr11 720405 720500 -150063053 + (TC)n Simple_repeat Simple_repeat 2 96 0 941 128 0 0 chr11 720602 720743 -150062810 + AluSp/q SINE Alu 165 305 -8 269 294 85 34 chr11 720748 720983 -150062570 + L1ME1 LINE L1 4225 4471 -1675 23 33 0 0 chr11 721026 721056 -150062497 + AT_rich Low_complexity Low_complexity 1 30 0 1479 182 0 62 chr11 721094 721207 -150062346 + AluJo SINE Alu 2 120 -192 1700 177 186 0 chr11 721207 721568 -150061985 + MSTA LTR MaLR 1 428 0 1479 182 0 62 chr11 721568 721761 -150061792 + AluJo SINE Alu 120 289 -23 1525 278 26 2 chr11 721787 722240 -150061313 + L1ME1 LINE L1 5511 5974 -192 207 0 0 0 chr11 722461 722484 -150061069 + (TGGG)n Simple_repeat Simple_repeat 2 24 0 2053 116 0 10 chr11 722564 722699 -150060854 + AluSx SINE Alu 1 136 -176 1899 72 35 88 chr11 722699 723017 -150060536 + AluY SINE Alu 1 301 -10 2053 116 0 10 chr11 723017 723183 -150060370 + AluSx SINE Alu 136 299 -13 209 288 30 0 chr11 725067 725133 -150058420 - MIR3 SINE MIR -53 155 88 338 226 60 38 chr11 725299 725432 -150058121 - L1ME4a LINE L1 -22 6099 5964 746 194 23 46 chr11 725475 725692 -150057861 - L1MB8 LINE L1 -3 6175 5964 2114 98 44 0 chr11 725696 725993 -150057560 - AluSx SINE Alu 0 312 3 1340 248 13 31 chr11 725996 726379 -150057174 - L1MB7 LINE L1 -46 6138 5763 4776 204 15 51 chr11 726401 726682 -150056871 - L1MB7 LINE L1 -1490 4656 4366 2450 77 0 0 chr11 726682 726993 -150056560 - AluY SINE Alu 0 311 1 4776 204 15 51 chr11 726993 727356 -150056197 - L1MB7 LINE L1 -1780 4366 3991 2413 70 0 3 chr11 727356 727657 -150055896 + AluY SINE Alu 1 300 -11 4776 204 15 51 chr11 727657 727698 -150055855 - L1MB7 LINE L1 -2155 3991 3950 2179 105 3 16 chr11 727698 728012 -150055541 + AluSg SINE Alu 1 310 0 4776 204 15 51 chr11 728012 728343 -150055210 - L1MB7 LINE L1 -2196 3950 3695 2218 84 10 26 chr11 728343 728654 -150054899 - AluSx SINE Alu -6 306 1 4776 204 15 51 chr11 728654 728968 -150054585 - L1MB7 LINE L1 -2451 3695 3371 458 287 191 19 chr11 729059 729388 -150054165 + L2 LINE L2 2644 3030 -283 2177 186 18 0 chr11 729389 729771 -150053782 - MLT1B LTR MaLR 0 390 2 1724 146 23 0 chr11 729785 730045 -150053508 - AluJb SINE Alu -46 266 1 359 293 168 22 chr11 730155 730376 -150053177 - L1M LINE L1 -733 5429 5177 1901 140 0 55 chr11 730404 730732 -150052821 - AluSx SINE Alu -2 310 1 1889 185 103 3 chr11 732049 732438 -150051115 - MSTA LTR MaLR 0 428 1 1691 113 9 118 chr11 733625 733954 -150049599 - AluJo SINE Alu -8 294 2 689 224 59 0 chr11 735318 735488 -150048065 + MLT1B LTR MaLR 5 184 -206 22 0 0 0 chr11 735490 735512 -150048041 + GC_rich Low_complexity Low_complexity 1 22 0 222 118 0 0 chr11 736726 736760 -150046793 + (TCC)n Simple_repeat Simple_repeat 2 35 0 1267 197 18 10 chr11 738519 738907 -150044646 + MER66B LTR ERV1 1 486 0 2263 94 0 3 chr11 739263 739562 -150043991 + AluY SINE Alu 1 298 -13 479 321 19 24 chr11 739612 739922 -150043631 - L1ME2 LINE L1 -2 6162 5852 4007 90 0 4 chr11 739952 740465 -150043088 + MER9 LTR ERVK 1 511 0 820 178 0 55 chr11 740545 740708 -150042845 - L1MB3 LINE L1 0 6183 6030 389 135 0 27 chr11 740716 740790 -150042763 - L1MB3 LINE L1 -82 6101 6030 393 135 0 27 chr11 740798 740872 -150042681 - L1MB3 LINE L1 -82 6101 6030 390 135 0 27 chr11 740880 740954 -150042599 - L1MB3 LINE L1 -82 6101 6030 439 108 0 27 chr11 740962 741036 -150042517 - L1MB3 LINE L1 -82 6101 6030 424 122 0 27 chr11 741044 741118 -150042435 - L1MB3 LINE L1 -82 6101 6030 1328 165 21 34 chr11 741126 741417 -150042136 - L1MB3 LINE L1 -82 6101 5815 1258 106 96 24 chr11 741445 741653 -150041900 - AluJo SINE Alu -75 237 15 405 125 42 0 chr11 741655 741727 -150041826 - L1MB3 LINE L1 -339 5832 5758 307 360 65 45 chr11 743378 743505 -150040048 + ERVL LTR ERVL 1575 1698 -4066 1696 191 57 17 chr11 743505 743856 -150039697 - MLT1A1 LTR MaLR 0 365 1 307 360 65 45 chr11 743856 744020 -150039533 + ERVL LTR ERVL 1698 1872 -3892 292 358 33 8 chr11 744060 744180 -150039373 - ERVL LTR ERVL -3757 2007 1885 2069 119 3 3 chr11 744205 744523 -150039030 - AluSx SINE Alu 0 312 1 1054 341 40 22 chr11 744534 745079 -150038474 + ERVL LTR ERVL 2383 2937 -2827 878 144 20 7 chr11 745088 745241 -150038312 + FRAM SINE Alu 1 154 -22 1076 337 76 6 chr11 745292 745767 -150037786 + ERVL LTR ERVL 2985 3492 -2272 785 353 43 26 chr11 745937 746401 -150037152 + ERVL LTR ERVL 3572 4043 -1721 707 304 130 9 chr11 746432 746856 -150036697 + ERVL LTR ERVL 4080 4554 -1100 2439 80 0 0 chr11 747329 747641 -150035912 - AluSx SINE Alu 0 312 1 231 36 0 0 chr11 747845 747873 -150035680 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 1497 161 4 4 chr11 747877 748126 -150035427 - L1PB1 LINE L1 -8 6143 5895 393 284 104 61 chr11 748905 749218 -150034335 + L1M4 LINE L1 3852 4150 -1996 2368 67 0 13 chr11 749218 749533 -150034020 + AluY SINE Alu 1 311 0 393 284 104 61 chr11 749533 749854 -150033699 + L1M4 LINE L1 4150 4513 -1633 758 148 0 11 chr11 749858 750040 -150033513 + (GA)n Simple_repeat Simple_repeat 1 180 0 2564 30 0 7 chr11 750446 750751 -150032802 + AluYa5 SINE Alu 9 311 0 1066 160 6 0 chr11 750751 750926 -150032627 + AluJb SINE Alu 124 299 -13 2298 66 10 3 chr11 750949 751252 -150032301 + AluY SINE Alu 1 305 -6 415 247 113 21 chr11 751553 751739 -150031814 + MER63A DNA MER1_type 3 205 -5 839 234 147 7 chr11 752254 752561 -150030992 - MLT1A1 LTR MaLR -13 352 3 182 146 0 85 chr11 753328 753410 -150030143 + (TGGGGG)n Simple_repeat Simple_repeat 5 79 0 182 36 0 36 chr11 753479 753507 -150030046 + (TGGGGG)n Simple_repeat Simple_repeat 5 31 0 335 156 0 142 chr11 753534 753739 -150029814 + G-rich Low_complexity Low_complexity 5 180 0 2042 126 7 10 chr11 754660 754969 -150028584 + AluSx SINE Alu 5 312 0 262 289 53 0 chr11 754983 755059 -150028494 + L1MC/D LINE L1 5726 5805 -2003 281 287 204 12 chr11 755104 755271 -150028282 - MIR SINE MIR -1 261 63 356 149 96 64 chr11 757851 757945 -150025608 - LTR26 LTR ERV1 -253 350 254 2028 100 28 7 chr11 757945 758234 -150025319 - AluSx SINE Alu -17 295 1 229 269 45 0 chr11 758422 758489 -150025064 + L1M4 LINE L1 3913 3982 -2164 619 283 134 26 chr11 758543 758916 -150024637 - L1MD3 LINE L1 -827 6981 6613 200 273 45 45 chr11 759170 759346 -150024207 + C-rich Low_complexity Low_complexity 4 179 0 481 329 91 18 chr11 759622 759953 -150023600 - L1MC4a LINE L1 -1237 6571 6217 1793 191 48 5 chr11 759964 760029 -150023524 - Tigger2a DNA MER2_type -2276 432 371 1701 158 14 0 chr11 760029 760313 -150023240 - AluJo SINE Alu -24 288 1 1793 191 48 5 chr11 760313 760625 -150022928 - Tigger2a DNA MER2_type -2337 371 39 2250 79 0 16 chr11 760804 761109 -150022444 - AluY SINE Alu -11 300 1 521 290 17 34 chr11 761362 761538 -150022015 - HsTC2 DNA Tc2 -537 1361 1189 311 269 6 103 chr11 761758 761914 -150021639 + L1MB7 LINE L1 3857 3997 -2149 1097 192 96 69 chr11 762214 762510 -150021043 + MLT1B LTR MaLR 43 350 -40 2038 110 0 17 chr11 762510 762809 -150020744 - AluSx SINE Alu -18 294 1 1097 192 96 69 chr11 762809 762846 -150020707 + MLT1B LTR MaLR 350 385 -5 972 127 18 30 chr11 762929 763095 -150020458 + AluJb SINE Alu 129 292 -20 430 281 88 16 chr11 763142 763391 -150020162 + L1MB7 LINE L1 4304 4570 -1576 239 365 16 16 chr11 763548 763674 -150019879 - L1M4 LINE L1 -2286 3860 3735 405 245 0 0 chr11 764812 765109 -150018444 + (TG)n Simple_repeat Simple_repeat 1 297 0 363 233 0 0 chr11 765121 765297 -150018256 + (TG)n Simple_repeat Simple_repeat 2 177 0 196 196 0 21 chr11 765318 765415 -150018138 + (TG)n Simple_repeat Simple_repeat 2 96 0 262 257 0 20 chr11 765428 765529 -150018024 + (TG)n Simple_repeat Simple_repeat 1 99 0 191 268 107 27 chr11 765751 765863 -150017690 + L2 LINE L2 3193 3313 0 303 93 0 0 chr11 766021 766064 -150017489 + (TTCC)n Simple_repeat Simple_repeat 3 45 0 2048 137 16 0 chr11 766069 766376 -150017177 - AluSx SINE Alu 0 312 1 332 206 41 0 chr11 766864 766937 -150016616 + MIR SINE MIR 70 145 -117 2134 184 78 42 chr11 767339 767710 -150015843 + L1MB7 LINE L1 4963 5319 -865 2248 75 7 7 chr11 767710 768005 -150015548 + AluY SINE Alu 1 295 -16 2134 184 78 42 chr11 768005 768467 -150015086 + L1MB7 LINE L1 5319 5825 -359 454 151 11 75 chr11 768471 768564 -150014989 + L1M3 LINE L1 5656 5742 -429 343 274 30 30 chr11 769266 769284 -150014269 - L1MA10 LINE L1 0 6334 6317 8921 240 53 42 chr11 769284 769491 -150014062 - L1ME1 LINE L1 -10 6225 6022 2519 91 81 37 chr11 769491 769900 -150013653 + MSTA LTR MaLR 1 427 -1 8921 240 53 42 chr11 769900 770478 -150013075 - L1ME1 LINE L1 -213 6022 5452 2174 109 0 13 chr11 770478 770782 -150012771 - AluSx SINE Alu -12 300 1 8921 240 53 42 chr11 770782 771290 -150012263 - L1ME1 LINE L1 -783 5452 4951 2406 183 17 19 chr11 771290 771711 -150011842 + L1MB2 LINE L1 5698 6119 -52 1244 167 89 60 chr11 771711 771993 -150011560 + AluJb SINE Alu 1 290 -22 2406 183 17 19 chr11 771993 772041 -150011512 + L1MB2 LINE L1 6119 6166 -5 8921 240 53 42 chr11 772041 772188 -150011365 - L1ME1 LINE L1 -1284 4951 4807 2243 108 0 9 chr11 772188 772503 -150011050 - AluSx SINE Alu 0 312 1 8921 240 53 42 chr11 772503 772747 -150010806 - L1ME1 LINE L1 -1428 4807 4567 1940 129 0 3 chr11 772747 773042 -150010511 - AluSx SINE Alu -18 294 1 8921 240 53 42 chr11 773042 775092 -150008461 - L1ME1 LINE L1 -1668 4567 2441 1577 247 62 5 chr11 775094 775499 -150008054 - L1ME1 LINE L1 -5785 611 184 2139 171 33 10 chr11 775599 776335 -150007218 + L1MB3 LINE L1 1614 2450 -3934 2290 95 0 0 chr11 776336 776631 -150006922 + AluY SINE Alu 1 295 -16 3834 232 25 14 chr11 776631 777820 -150005733 + L1MB3 LINE L1 2651 3853 -2529 1614 120 12 4 chr11 777829 778071 -150005482 - THE1B LTR MaLR 0 364 121 5209 235 53 47 chr11 778080 779278 -150004275 + L1MB3 LINE L1 3858 5072 -1310 2045 117 7 3 chr11 779278 779578 -150003975 - AluSq SINE Alu -12 301 1 5209 235 53 47 chr11 779578 780098 -150003455 + L1MB3 LINE L1 5072 5587 -795 2260 109 0 0 chr11 780098 780530 -150003023 - AluSx SINE Alu 0 432 1 2630 251 72 19 chr11 780530 781298 -150002255 + L1MB3 LINE L1 5572 6379 -40 2311 78 0 0 chr11 781300 781593 -150001960 + AluSc SINE Alu 6 298 -11 736 139 9 0 chr11 781606 781721 -150001832 + FLAM_C SINE Alu 6 121 -22 198 0 0 0 chr11 781721 781743 -150001810 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 1227 286 51 0 chr11 784736 785190 -149998363 - L1MB3 LINE L1 -84 6099 5623 336 250 20 10 chr11 785191 785291 -149998262 - L1MB3 LINE L1 -622 5549 5449 241 304 0 0 chr11 785296 785365 -149998188 + L1ME LINE L1 5590 5658 -463 297 277 34 25 chr11 787212 787331 -149996222 - L1ME LINE L1 -622 5824 5705 1224 52 0 7 chr11 787735 787888 -149995665 + AluY SINE Alu 1 152 -159 2320 91 3 0 chr11 788443 788751 -149994802 - AluSg SINE Alu -1 309 1 502 254 60 50 chr11 789363 789761 -149993792 - L1ME LINE L1 -1331 5095 4680 945 269 177 13 chr11 789861 790240 -149993313 + LTR33 LTR ERVL 32 472 -49 4050 217 74 89 chr11 790242 790572 -149992981 - L1MCa LINE L1 -3302 3124 2790 2126 133 0 0 chr11 790572 790881 -149992672 - AluSg SINE Alu -1 309 1 4050 217 74 89 chr11 790881 791118 -149992435 - L1MCa LINE L1 -3636 2790 2551 318 24 24 0 chr11 791118 791160 -149992393 + (TTTA)n Simple_repeat Simple_repeat 2 180 0 2203 82 7 0 chr11 791160 791442 -149992111 - AluSp SINE Alu -1 325 1 4050 217 74 89 chr11 791442 791625 -149991928 - L1MCa LINE L1 -3874 2552 2368 2175 127 41 36 chr11 791625 791987 -149991566 + THE1B LTR MaLR 1 364 0 4050 217 74 89 chr11 791987 792919 -149990634 - L1MCa LINE L1 -4058 2368 1423 1277 122 0 0 chr11 792919 793100 -149990453 - AluSq SINE Alu -1 312 132 2400 73 0 10 chr11 793100 793414 -149990139 - AluY SINE Alu 0 311 1 4050 217 74 89 chr11 793414 794127 -149989426 - L1MCa LINE L1 -5001 1425 575 1514 165 0 18 chr11 794132 794411 -149989142 - L1MCa LINE L1 -5811 615 342 1247 174 41 90 chr11 794553 794862 -149988691 - L1MCa LINE L1 -6063 363 71 2306 78 3 3 chr11 794862 795157 -149988396 - AluY SINE Alu -16 295 1 1247 174 41 90 chr11 795157 795192 -149988361 - L1MCa LINE L1 -6355 71 36 1991 205 66 35 chr11 795592 795848 -149987705 - MER90 LTR ERV1 0 614 367 2231 108 0 3 chr11 795848 796162 -149987391 - AluSq SINE Alu 0 313 1 1991 205 66 35 chr11 796162 796451 -149987102 - MER90 LTR ERV1 -247 367 52 12992 171 16 33 chr11 796839 796885 -149986668 + L1 LINE L1 2350 2395 -3751 2150 121 16 0 chr11 796885 797192 -149986361 + AluSx SINE Alu 1 312 0 12992 171 16 33 chr11 797192 797686 -149985867 + L1 LINE L1 2395 2896 -3250 2215 98 10 0 chr11 797686 797992 -149985561 + AluSx SINE Alu 2 310 -2 12992 171 16 33 chr11 797992 798662 -149984891 + L1 LINE L1 2896 3576 -2570 1863 97 45 4 chr11 798662 798956 -149984597 + AluY SINE Alu 1 305 0 12992 171 16 33 chr11 798956 800789 -149982764 + L1 LINE L1 3576 5345 -801 2115 96 0 55 chr11 800789 801101 -149982452 - AluSx SINE Alu -17 295 1 228 287 6 54 chr11 801181 801200 -149982353 - L1MA10 LINE L1 0 6334 6316 674 190 13 91 chr11 801200 801432 -149982121 - L1ME2 LINE L1 -9 6155 5942 556 297 89 12 chr11 801456 801793 -149981760 - L1M4c LINE L1 -4782 1602 1240 978 212 41 17 chr11 801798 802248 -149981305 - MLT1E LTR MaLR -37 556 1 642 224 77 29 chr11 802275 802445 -149981108 - L2 LINE L2 -1034 2280 2103 205 253 19 45 chr11 803403 803557 -149979996 + (GGGTG)n Simple_repeat Simple_repeat 3 152 0 * 275 149 93 43 chr11 803442 803603 -149979950 + (CTGGGG)n Simple_repeat Simple_repeat 3 171 0 300 219 0 0 chr11 812815 812897 -149970656 + (CCCCG)n Simple_repeat Simple_repeat 1 82 0 184 184 0 26 chr11 813667 813743 -149969810 + G-rich Low_complexity Low_complexity 1 74 0 541 253 124 62 chr11 814484 814903 -149968650 - MLT1C LTR MaLR -15 452 8 2240 107 3 0 chr11 816543 816851 -149966702 + AluSq SINE Alu 1 309 -4 182 319 190 0 chr11 817184 817300 -149966253 - L2 LINE L2 0 3313 3176 328 373 0 0 chr11 817530 817640 -149965913 + (TGGG)n Simple_repeat Simple_repeat 1 110 0 253 307 7 15 chr11 822224 822361 -149961192 + (CCA)n Simple_repeat Simple_repeat 3 138 0 231 307 7 15 chr11 823895 824032 -149959521 + (CCA)n Simple_repeat Simple_repeat 3 138 0 471 299 147 0 chr11 824378 824582 -149958971 - L2 LINE L2 -1217 2097 1864 2317 171 69 19 chr11 824584 825106 -149958447 - MER41C LTR ERV1 0 554 7 23 33 0 0 chr11 825720 825750 -149957803 + GC_rich Low_complexity Low_complexity 1 30 0 260 294 35 12 chr11 826690 826775 -149956778 + MIR3 SINE MIR 107 193 -15 2192 152 89 8 chr11 826885 827279 -149956274 - MSTA LTR MaLR -2 426 1 200 293 0 12 chr11 828498 828580 -149954973 + G-rich Low_complexity Low_complexity 3 83 0 352 321 49 40 chr11 829741 829965 -149953588 - L1MC5 LINE L1 -741 7220 6995 288 345 28 0 chr11 830317 830459 -149953094 - L1MCa LINE L1 -3791 2635 2490 307 298 53 53 chr11 830485 830673 -149952880 - L1MCa LINE L1 -3964 2462 2275 2265 102 0 0 chr11 831355 831659 -149951894 - AluSx SINE Alu -8 304 1 379 280 77 10 chr11 833776 833983 -149949570 + MER106B DNA MER1_type 7 227 -832 596 285 131 15 chr11 834022 834572 -149948981 + MER106B DNA MER1_type 352 1059 0 560 301 97 11 chr11 836213 836575 -149946978 - L1MD3 LINE L1 0 7995 7603 340 178 0 97 chr11 838361 838546 -149945007 + (CACCC)n Simple_repeat Simple_repeat 3 169 0 261 191 0 96 chr11 838557 838714 -149944839 + (CACCC)n Simple_repeat Simple_repeat 3 144 0 219 216 20 0 chr11 839401 839452 -149944101 - MIR SINE MIR -60 148 97 207 392 110 18 chr11 841633 842133 -149941420 + L2 LINE L2 2035 2580 -734 419 330 68 56 chr11 842803 843158 -149940395 + HAL1b LINE L1 335 693 -655 227 274 0 12 chr11 843945 844029 -149939524 - L1 LINE L1 -1082 5064 4982 231 200 40 0 chr11 846124 846174 -149937379 + (CCCTAG)n Simple_repeat Simple_repeat 6 57 0 348 253 66 0 chr11 847252 847418 -149936135 + (CAGGG)n Simple_repeat Simple_repeat 4 180 0 427 160 67 0 chr11 847532 848057 -149935496 + (CGG)n Simple_repeat Simple_repeat 1 560 0 2284 82 0 3 chr11 850813 851107 -149932446 + AluY SINE Alu 5 297 -14 520 187 0 37 chr11 852487 852616 -149930937 - L1PA8A LINE L1 0 6131 6025 207 0 0 0 chr11 852651 852674 -149930879 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1039 33 0 0 chr11 852676 852798 -149930755 - L1PA4 LINE L1 -13 6142 6021 958 80 0 22 chr11 852815 852953 -149930600 - L1PA4 LINE L1 0 6155 6021 1000 58 0 22 chr11 852970 853108 -149930445 - L1PA4 LINE L1 0 6155 6021 805 249 47 8 chr11 853113 853370 -149930183 - L1MC4 LINE L1 -994 7048 6782 27 29 0 0 chr11 861900 861934 -149921619 + AT_rich Low_complexity Low_complexity 1 34 0 2479 58 0 3 chr11 861934 862243 -149921310 - AluY SINE Alu -3 308 1 219 69 0 0 chr11 862550 862579 -149920974 + (T)n Simple_repeat Simple_repeat 1 29 0 398 322 141 34 chr11 865927 866150 -149917403 + L1M4 LINE L1 4508 4706 -1440 2060 103 17 13 chr11 866150 866451 -149917102 + AluSx SINE Alu 11 312 0 2184 102 0 3 chr11 866458 866753 -149916800 + AluSg SINE Alu 1 294 -16 398 322 141 34 chr11 866753 867118 -149916435 + L1M4 LINE L1 4711 5168 -978 2229 110 3 0 chr11 867178 867486 -149916067 + AluSx SINE Alu 1 309 -3 620 288 56 28 chr11 867553 867838 -149915715 - HAL1 LINE L1 -799 1708 1416 2488 79 0 0 chr11 868149 868491 -149915062 + THE1A LTR MaLR 14 355 0 11729 100 4 19 chr11 868492 868928 -149914625 + THE1A-int LTR MaLR 3 444 -1136 2095 102 18 0 chr11 868928 869212 -149914341 + AluSx SINE Alu 1 289 -23 11729 100 4 19 chr11 869212 870378 -149913175 + THE1A-int LTR MaLR 444 1580 0 2638 69 29 6 chr11 870378 870725 -149912828 + THE1A LTR MaLR 1 355 0 1695 137 21 27 chr11 870725 871054 -149912499 + THE1C LTR MaLR 49 375 0 2483 71 0 0 chr11 871299 871609 -149911944 - AluY SINE Alu -1 310 1 417 316 99 0 chr11 871648 871819 -149911734 + MIR SINE MIR 4 191 -71 229 128 0 139 chr11 872638 872724 -149910829 + (CGGGA)n Simple_repeat Simple_repeat 2 75 0 217 204 51 51 chr11 878859 878957 -149904596 + G-rich Low_complexity Low_complexity 4 101 0 206 255 20 0 chr11 880222 880273 -149903280 + MIR SINE MIR 90 141 -67 848 237 117 41 chr11 880283 880701 -149902852 + MLT1C LTR MaLR 6 455 -12 231 253 0 0 chr11 881062 881157 -149902396 + (CACCC)n Simple_repeat Simple_repeat 5 99 0 218 318 7 13 chr11 883158 883312 -149900241 + (TGG)n Simple_repeat Simple_repeat 1 153 0 207 328 0 0 chr11 883367 883486 -149900067 + (TGG)n Simple_repeat Simple_repeat 3 121 0 217 314 7 15 chr11 885374 885511 -149898042 + (TGG)n Simple_repeat Simple_repeat 3 138 0 242 307 7 15 chr11 887045 887182 -149896371 + (TGG)n Simple_repeat Simple_repeat 3 138 0 2930 214 22 27 chr11 1089123 1090156 -149693397 + L1P3 LINE L1 981 2000 -4461 5704 85 2 0 chr11 1090256 1091112 -149692441 - L1P LINE L1 -1542 4604 3747 2314 11 0 0 chr11 1091111 1091530 -149692023 + L1P1 LINE L1 5133 5551 -604 * 411 172 188 39 chr11 1092520 1092648 -149690905 - L2 LINE L2 0 3313 3167 349 227 33 60 chr11 1092897 1093047 -149690506 - L1MD3 LINE L1 -8 7987 7842 528 211 17 18 chr11 1093047 1093177 -149690376 - MER20 DNA MER1_type -57 162 48 492 303 92 80 chr11 1093649 1094249 -149689304 + L1MC/D LINE L1 4785 5449 -767 236 363 48 0 chr11 1094252 1094398 -149689155 - MLT1I LTR MaLR -13 396 244 2271 233 105 27 chr11 1094679 1095037 -149688516 - L1 LINE L1 -3739 3826 3497 366 91 0 0 chr11 1095037 1095092 -149688461 + (TG)n Simple_repeat Simple_repeat 2 56 0 2271 233 105 27 chr11 1095092 1095897 -149687656 - L1 LINE L1 -4068 3497 2582 1967 148 167 11 chr11 1098692 1099063 -149684490 - Tigger2a DNA MER2_type -2 432 4 199 378 75 21 chr11 1099646 1099834 -149683719 - L2 LINE L2 -14 3299 3102 245 327 154 29 chr11 1099967 1100175 -149683378 - L2 LINE L2 -509 2805 2572 281 246 100 18 chr11 1102159 1102269 -149681284 + MIR SINE MIR 117 235 -27 316 249 228 40 chr11 1102597 1103023 -149680530 - L2 LINE L2 -735 2579 2074 1610 53 18 0 chr11 1103112 1103339 -149680214 - L1PA5 LINE L1 -253 5901 5671 187 223 97 39 chr11 1103601 1103704 -149679849 - L2 LINE L2 -1688 1626 1518 1684 32 0 0 chr11 1103740 1103960 -149679593 + L1P2 LINE L1 5334 5553 -601 2022 99 28 62 chr11 1104075 1104397 -149679156 - AluSx SINE Alu 0 312 2 2213 64 43 0 chr11 1104471 1104751 -149678802 - AluY SINE Alu -17 294 3 699 207 0 15 chr11 1104755 1104890 -149678663 - FLAM_C SINE Alu 0 133 1 200 322 25 34 chr11 1104909 1105027 -149678526 + MER5A DNA MER1_type 46 162 -27 1814 144 0 23 chr11 1105480 1105779 -149677774 - AluJo SINE Alu -20 292 1 3560 44 9 0 chr11 1107134 1107564 -149675989 + L1PA6 LINE L1 5721 6154 0 1492 205 166 27 chr11 1107916 1108326 -149675227 - MLT1C LTR MaLR 0 467 1 239 302 52 10 chr11 1110989 1111085 -149672468 + L2 LINE L2 3174 3273 -40 260 326 132 21 chr11 1111597 1111741 -149671812 + MIR SINE MIR 1 160 -102 233 235 176 29 chr11 1112041 1112143 -149671410 - MIR3 SINE MIR -7 201 85 261 119 0 0 chr11 1114234 1114276 -149669277 + (T)n Simple_repeat Simple_repeat 1 42 0 39 92 0 0 chr11 1114781 1114890 -149668663 + GC_rich Low_complexity Low_complexity 1 109 0 23 0 0 0 chr11 1114967 1114990 -149668563 + GC_rich Low_complexity Low_complexity 1 23 0 31 44 0 0 chr11 1115014 1115059 -149668494 + GC_rich Low_complexity Low_complexity 1 45 0 248 164 45 15 chr11 1115233 1115300 -149668253 + (CCGGG)n Simple_repeat Simple_repeat 3 71 0 546 261 0 0 chr11 1115483 1115659 -149667894 + (CTGGGG)n Simple_repeat Simple_repeat 3 178 0 233 170 0 38 chr11 1116154 1116207 -149667346 + GA-rich Low_complexity Low_complexity 2 52 0 25 51 0 0 chr11 1116440 1116479 -149667074 + GC_rich Low_complexity Low_complexity 1 39 0 213 125 62 0 chr11 1116530 1116578 -149666975 + (CCCCG)n Simple_repeat Simple_repeat 3 53 0 226 217 9 47 chr11 1116599 1116705 -149666848 + G-rich Low_complexity Low_complexity 1 102 0 3065 162 34 26 chr11 1116846 1117463 -149666090 - L1MC1 LINE L1 -172 6161 5540 400 341 97 19 chr11 1117728 1118048 -149665505 + MLT1I LTR MaLR 42 386 -23 1762 157 0 41 chr11 1118465 1118783 -149664770 + AluJb SINE Alu 1 305 -7 2188 104 0 0 chr11 1118785 1119082 -149664471 + AluY SINE Alu 1 297 -14 2254 87 3 10 chr11 1119524 1119834 -149663719 + AluY SINE Alu 1 308 -3 576 280 134 8 chr11 1119916 1120231 -149663322 - MLT1G1 LTR MaLR -175 367 12 1849 151 3 10 chr11 1120341 1120632 -149662921 + AluJb SINE Alu 21 309 -3 296 283 42 17 chr11 1120889 1121009 -149662544 + (TATATG)n Simple_repeat Simple_repeat 2 124 0 313 289 66 33 chr11 1121099 1121251 -149662302 - L1MC5 LINE L1 -45 7916 7760 859 175 0 0 chr11 1121252 1121395 -149662158 + FLAM_C SINE Alu 1 143 0 298 302 35 0 chr11 1122352 1122438 -149661115 + MIR3 SINE MIR 109 197 -11 279 176 29 20 chr11 1122801 1122874 -149660679 + MSTC LTR MaLR 7 81 -284 1513 173 47 20 chr11 1122875 1123176 -149660377 + AluJo SINE Alu 1 309 -3 1883 131 4 4 chr11 1123177 1123452 -149660101 + AluSx SINE Alu 1 275 -37 2159 112 3 0 chr11 1123623 1123918 -149659635 - AluSx SINE Alu -16 296 1 210 71 0 0 chr11 1125262 1125290 -149658263 + (CAGCC)n Simple_repeat Simple_repeat 1 28 0 235 278 0 0 chr11 1125388 1125442 -149658111 + MIR SINE MIR 96 149 -113 422 239 84 80 chr11 1125813 1126052 -149657501 - MLT1D LTR MaLR -260 245 6 212 0 36 0 chr11 1126206 1126234 -149657319 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1778 174 3 3 chr11 1126236 1126535 -149657018 - AluSx SINE Alu -5 307 9 297 211 44 22 chr11 1126903 1126993 -149656560 - L1MB3 LINE L1 -2 6181 6090 1216 201 48 0 chr11 1128173 1128446 -149655107 - L1MB3 LINE L1 -75 6108 5823 1355 94 4 3 chr11 1128446 1128691 -149654862 - AluSp SINE Alu -6 307 1 424 184 149 21 chr11 1128692 1128833 -149654720 - L1MB3 LINE L1 -342 5829 5671 1876 155 3 16 chr11 1132140 1132444 -149651109 - AluJo SINE Alu -12 300 1 318 295 74 20 chr11 1133059 1133208 -149650345 + L2 LINE L2 2848 3004 -309 195 350 36 44 chr11 1134866 1135003 -149648550 - MIR3 SINE MIR -71 137 2 235 208 94 62 chr11 1135104 1135200 -149648353 - MIR SINE MIR -133 129 31 308 381 14 36 chr11 1136445 1136584 -149646969 - L1MB3 LINE L1 -2206 5602 5467 29 0 0 0 chr11 1137890 1137919 -149645634 + AT_rich Low_complexity Low_complexity 1 29 0 1354 186 48 11 chr11 1137923 1138277 -149645276 + Charlie5 DNA MER1_type 2235 2601 -11 1200 306 101 38 chr11 1138280 1139772 -149643781 + L1ME LINE L1 113 1737 -4573 614 349 73 46 chr11 1139781 1140324 -149643229 + L1ME LINE L1 1789 3318 -2811 4502 206 49 39 chr11 1140366 1141795 -149641758 + L1ME LINE L1 3706 5148 -981 271 247 7 7 chr11 1141916 1142070 -149641483 + (TG)n Simple_repeat Simple_repeat 2 155 0 2321 51 27 10 chr11 1143915 1144209 -149639344 + AluY SINE Alu 1 299 -12 230 238 32 16 chr11 1144618 1144681 -149638872 - L2 LINE L2 0 3272 3209 182 234 0 94 chr11 1150916 1150980 -149632573 - MIR SINE MIR -117 145 88 201 246 108 15 chr11 1151223 1151288 -149632265 - MIR3 SINE MIR -27 181 111 689 321 11 0 chr11 1153326 1153513 -149630040 + MIR SINE MIR 46 234 -28 1070 72 0 7 chr11 1154382 1154534 -149629019 + AluY SINE Alu 149 299 -12 271 188 39 47 chr11 1155897 1156025 -149627528 + (GGGTG)n Simple_repeat Simple_repeat 3 129 0 2286 76 0 20 chr11 1158847 1159148 -149624405 + AluSc SINE Alu 1 295 -14 1918 183 40 0 chr11 1159823 1160146 -149623407 - MER1B DNA MER1_type 0 337 2 261 75 0 0 chr11 1162739 1162779 -149620774 + (CCCCG)n Simple_repeat Simple_repeat 5 44 0 22 0 0 0 chr11 1163077 1163099 -149620454 + GC_rich Low_complexity Low_complexity 1 22 0 236 217 0 0 chr11 1163341 1163387 -149620166 + MIR SINE MIR 107 152 -110 369 216 11 0 chr11 1163890 1163978 -149619575 - MER45A DNA AcHobo -21 157 69 267 217 17 0 chr11 1165862 1165922 -149617631 - MIR SINE MIR -62 146 86 1612 186 32 0 chr11 1166410 1166749 -149616804 + L1ME LINE L1 5251 5600 -549 1521 283 63 67 chr11 1166752 1167993 -149615560 + L1M4 LINE L1 2558 3793 -2353 436 228 31 6 chr11 1168982 1169137 -149614416 + MIR SINE MIR 61 219 -43 188 151 170 19 chr11 1169188 1169241 -149614312 - MIR3 SINE MIR -52 156 96 258 81 0 0 chr11 1178540 1178577 -149604976 + (TC)n Simple_repeat Simple_repeat 2 38 0 218 358 47 34 chr11 1181722 1181870 -149601683 + MIR3 SINE MIR 34 183 -25 221 287 11 23 chr11 1182581 1182668 -149600885 + G-rich Low_complexity Low_complexity 2 87 0 2891 161 24 39 chr11 1183297 1183795 -149599758 + MER39B LTR ERV1 1 490 -163 2510 36 3 7 chr11 1183795 1184104 -149599449 - AluY SINE Alu -3 308 1 2891 161 24 39 chr11 1184104 1184228 -149599325 + MER39B LTR ERV1 490 614 -39 346 329 105 44 chr11 1184955 1185299 -149598254 - L2 LINE L2 -93 3179 2815 245 329 37 0 chr11 1185472 1185554 -149597999 - L2 LINE L2 -5 3308 3224 260 296 348 12 chr11 1185651 1186474 -149597079 - L2 LINE L2 -524 2790 1692 372 241 25 0 chr11 1187929 1188008 -149595545 + MER81 DNA DNA 17 97 -17 234 255 0 0 chr11 1188306 1188353 -149595200 + (TG)n Simple_repeat Simple_repeat 1 47 0 1522 177 65 31 chr11 1188642 1188936 -149594617 - AluJo SINE Alu -8 304 1 1890 136 6 31 chr11 1189789 1190106 -149593447 + AluSx SINE Alu 1 309 -3 518 300 66 31 chr11 1190278 1190505 -149593048 + MIR SINE MIR 21 255 -7 2264 92 10 0 chr11 1190696 1190991 -149592562 + AluSg SINE Alu 1 298 -12 459 95 0 0 chr11 1191256 1191330 -149592223 - MIR SINE MIR -123 139 66 247 215 0 32 chr11 1191852 1191945 -149591608 + GA-rich Low_complexity Low_complexity 3 92 0 181 237 51 0 chr11 1192146 1192205 -149591348 - MIR SINE MIR -61 147 86 219 114 0 0 chr11 1192547 1192582 -149590971 + (GGAA)n Simple_repeat Simple_repeat 1 35 0 380 250 0 0 chr11 1192665 1192749 -149590804 + MIR SINE MIR 68 151 -57 439 278 44 56 chr11 1194230 1194410 -149589143 + MIR SINE MIR 85 262 0 233 304 48 32 chr11 1195091 1195216 -149588337 + MIR SINE MIR 59 185 -77 1778 166 3 7 chr11 1195399 1195700 -149587853 - AluJb SINE Alu 0 312 13 245 298 75 6 chr11 1195956 1196117 -149587436 - MLT1J2 LTR MaLR -245 205 34 191 295 39 26 chr11 1196278 1196356 -149587197 - L3 LINE CR1 -220 1357 1279 306 73 0 0 chr11 1197628 1197669 -149585884 + (TG)n Simple_repeat Simple_repeat 1 41 0 236 212 26 62 chr11 1198205 1198318 -149585235 + (CCGGG)n Simple_repeat Simple_repeat 2 110 0 260 185 0 0 chr11 1198646 1198700 -149584853 - L2 LINE L2 -265 3048 2995 225 363 26 0 chr11 1198838 1198951 -149584602 - L2 LINE L2 -670 2644 2529 191 355 26 0 chr11 1199061 1199137 -149584416 - L2 LINE L2 -953 2361 2284 211 243 27 40 chr11 1202292 1202366 -149581187 - MIR SINE MIR -116 92 20 208 244 0 0 chr11 1203482 1203527 -149580026 + (TG)n Simple_repeat Simple_repeat 1 45 0 1547 149 58 0 chr11 1206939 1207200 -149576353 - AluJb SINE Alu -20 292 17 350 256 87 23 chr11 1207280 1207452 -149576101 - MLT1K LTR MaLR -243 345 163 289 324 133 6 chr11 1207836 1208009 -149575544 + MIR SINE MIR 27 221 -41 1099 81 0 69 chr11 1209160 1209333 -149574220 + AluY SINE Alu 1 161 -150 256 198 10 10 chr11 1209348 1209444 -149574109 + (CA)n Simple_repeat Simple_repeat 2 97 0 239 333 21 0 chr11 1210842 1210938 -149572615 + MIR SINE MIR 84 181 -81 1771 145 35 10 chr11 1211076 1211365 -149572188 - AluJo SINE Alu -16 296 1 235 302 93 0 chr11 1212564 1212693 -149570860 + LTR48 LTR ERV1 579 719 -68 191 356 11 11 chr11 1214706 1214793 -149568760 + L2 LINE L2 2965 3051 -221 182 236 91 0 chr11 1216876 1216931 -149566622 - L2 LINE L2 -1375 1939 1880 259 121 45 15 chr11 1217221 1217287 -149566266 + (CCCGG)n Simple_repeat Simple_repeat 3 70 0 30 27 0 0 chr11 1217326 1217363 -149566190 + GC_rich Low_complexity Low_complexity 1 37 0 23 68 0 0 chr11 1217678 1217722 -149565831 + GC_rich Low_complexity Low_complexity 1 44 0 43 20 0 0 chr11 1217812 1217862 -149565691 + GC_rich Low_complexity Low_complexity 1 50 0 376 354 112 29 chr11 1218360 1218451 -149565102 + HAL1 LINE L1 1004 1086 -1421 1498 177 75 17 chr11 1218451 1218745 -149564808 + AluJb SINE Alu 2 312 0 376 354 112 29 chr11 1218745 1218930 -149564623 + HAL1 LINE L1 1086 1303 -1204 398 318 41 72 chr11 1220097 1220181 -149563372 + L1ME4a LINE L1 1040 1125 -4996 764 186 0 0 chr11 1220181 1220305 -149563248 + FLAM_A SINE Alu 1 124 -9 398 318 41 72 chr11 1220305 1220321 -149563232 + L1ME4a LINE L1 1125 1140 -4981 1758 140 0 29 chr11 1220321 1220599 -149562954 + AluJo SINE Alu 19 288 -24 398 318 41 72 chr11 1220599 1220821 -149562732 + L1ME4a LINE L1 1140 6119 -2 196 354 13 0 chr11 1221257 1221336 -149562217 - MIR SINE MIR -84 124 45 202 259 37 0 chr11 1221445 1221499 -149562054 + GA-rich Low_complexity Low_complexity 1 56 0 1976 176 43 5 chr11 1221949 1222325 -149561228 + MLT1B LTR MaLR 1 390 0 214 200 0 18 chr11 1222983 1223038 -149560515 + A-rich Low_complexity Low_complexity 2 55 0 258 105 0 0 chr11 1223598 1223636 -149559917 + (TTCA)n Simple_repeat Simple_repeat 2 39 0 218 265 15 0 chr11 1224565 1224633 -149558920 + (CGGA)n Simple_repeat Simple_repeat 2 70 0 2141 102 0 57 chr11 1227219 1227551 -149556002 - AluSq SINE Alu 0 313 1 251 170 21 0 chr11 1227742 1227789 -149555764 - MLT1A1 LTR MaLR 0 457 410 2123 109 3 0 chr11 1227790 1228116 -149555437 - AluSp SINE Alu 0 327 1 582 91 0 0 chr11 1228118 1228195 -149555358 - AluSp SINE Alu -181 132 56 674 150 33 0 chr11 1228196 1228316 -149555237 - MLT1A1 LTR MaLR -38 327 204 247 279 0 15 chr11 1230432 1230500 -149553053 + G-rich Low_complexity Low_complexity 2 68 0 411 325 90 8 chr11 1230557 1230791 -149552762 - L2 LINE L2 -254 3059 2807 262 0 53 0 chr11 1230927 1230965 -149552588 + (TG)n Simple_repeat Simple_repeat 2 41 0 276 152 63 13 chr11 1230989 1231147 -149552406 + (TG)n Simple_repeat Simple_repeat 2 167 0 224 295 71 36 chr11 1231492 1231604 -149551949 - MIR SINE MIR -62 146 31 321 290 73 17 chr11 1232150 1232297 -149551256 + MIR SINE MIR 5 148 -62 1046 261 46 4 chr11 1232923 1233256 -149550297 - MLT1A2 LTR MaLR -23 444 1 320 267 103 0 chr11 1235844 1235960 -149547593 - MIR SINE MIR -120 142 15 226 333 0 0 chr11 1236360 1236417 -149547136 - MIR SINE MIR -93 169 113 821 251 5 5 chr11 1237051 1237250 -149546303 + MER58A DNA MER1_type 26 224 0 407 324 91 16 chr11 1237334 1237587 -149545966 + L1ME LINE L1 5539 5810 -311 201 132 0 0 chr11 1237852 1237890 -149545663 + (GGGA)n Simple_repeat Simple_repeat 1 38 0 214 319 0 30 chr11 1239214 1239349 -149544204 + C-rich Low_complexity Low_complexity 2 132 0 208 410 35 0 chr11 1239480 1239624 -149543929 + MIR SINE MIR 91 239 -23 207 69 0 0 chr11 1240137 1240166 -149543387 + (ATTG)n Simple_repeat Simple_repeat 3 31 0 530 229 6 0 chr11 1240419 1240598 -149542955 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 228 67 0 0 chr11 1240599 1240629 -149542924 + (TGGG)n Simple_repeat Simple_repeat 2 31 0 482 144 19 0 chr11 1240759 1240863 -149542690 - HAL1b LINE L1 -278 1070 965 417 352 20 52 chr11 1240978 1241228 -149542325 - HAL1b LINE L1 -534 814 573 1128 341 85 1 chr11 1241423 1242167 -149541386 - HAL1 LINE L1 -725 1782 977 322 188 35 0 chr11 1243819 1243904 -149539649 + CT-rich Low_complexity Low_complexity 4 91 0 325 299 75 21 chr11 1244140 1244381 -149539172 + L2 LINE L2 2634 2887 -427 190 372 35 26 chr11 1244585 1244698 -149538855 + L2 LINE L2 3180 3293 -20 254 235 10 0 chr11 1245435 1245537 -149538016 + (TGGA)n Simple_repeat Simple_repeat 2 104 0 698 208 12 0 chr11 1245553 1245986 -149537567 + (TGGA)n Simple_repeat Simple_repeat 1 438 0 410 233 17 6 chr11 1245997 1246173 -149537380 + (TGGA)n Simple_repeat Simple_repeat 3 180 0 378 151 0 0 chr11 1246162 1246235 -149537318 + GA-rich Low_complexity Low_complexity 1 73 0 * 192 333 200 0 chr11 1246600 1246705 -149536848 - MIR SINE MIR -2 260 135 271 253 12 0 chr11 1248229 1248312 -149535241 + L2 LINE L2 2892 2975 -339 351 167 51 0 chr11 1249459 1249537 -149534016 - MER103 DNA DNA -67 99 18 234 62 0 0 chr11 1250652 1250684 -149532869 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 233 316 63 0 chr11 1250689 1250784 -149532769 - L2 LINE L2 -36 3236 3136 366 333 165 12 chr11 1251035 1251290 -149532263 - L1 LINE L1 -2310 3836 3543 308 311 144 16 chr11 1251346 1251976 -149531577 - L1 LINE L1 -2665 3481 2771 264 30 0 0 chr11 1252117 1252150 -149531403 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1514 194 110 22 chr11 1253434 1253878 -149529675 + MLT1D LTR MaLR 23 505 0 205 309 119 99 chr11 1253885 1254287 -149529266 - L2 LINE L2 -46 3226 2817 352 288 59 13 chr11 1254402 1254638 -149528915 + HAL1 LINE L1 1017 1263 -1244 712 245 142 78 chr11 1254649 1255200 -149528353 + HAL1 LINE L1 1337 1922 -585 281 233 0 22 chr11 1255626 1255716 -149527837 + (CA)n Simple_repeat Simple_repeat 1 88 0 222 334 178 28 chr11 1255747 1256286 -149527267 - L2 LINE L2 -623 2691 2072 267 289 198 0 chr11 1257124 1257245 -149526308 - L2 LINE L2 -9 3263 3119 184 268 0 0 chr11 1258309 1258350 -149525203 - L2 LINE L2 -31 3241 3201 571 340 41 16 chr11 1258872 1259187 -149524366 - MLT1J LTR MaLR -148 363 41 222 384 138 15 chr11 1259249 1259780 -149523773 - L2 LINE L2 -769 2545 1950 406 275 42 75 chr11 1259853 1260093 -149523460 + HAL1 LINE L1 6 237 -2270 406 315 36 27 chr11 1260142 1260364 -149523189 + HAL1 LINE L1 391 614 -1893 2326 240 77 46 chr11 1260371 1261365 -149522188 + HAL1 LINE L1 1392 2415 -92 506 69 0 83 chr11 1261490 1261635 -149521918 + (GGA)n Simple_repeat Simple_repeat 1 133 0 213 261 0 0 chr11 1262403 1262449 -149521104 + MIR3 SINE MIR 109 154 -54 203 447 11 0 chr11 1262540 1262719 -149520834 + MIR SINE MIR 36 216 -46 194 336 58 73 chr11 1262974 1263111 -149520442 + L2 LINE L2 3022 3156 -116 203 210 8 40 chr11 1263156 1263280 -149520273 + C-rich Low_complexity Low_complexity 1 120 0 251 210 7 91 chr11 1265669 1265812 -149517741 + (ACGTG)n Simple_repeat Simple_repeat 5 135 0 321 26 0 0 chr11 1266950 1266988 -149516565 + (CA)n Simple_repeat Simple_repeat 1 38 0 266 299 159 75 chr11 1267070 1267535 -149516018 - L2 LINE L2 -6 3307 2804 217 259 103 52 chr11 1267700 1267874 -149515679 - L2 LINE L2 -2678 636 454 205 299 73 15 chr11 1269214 1269351 -149514202 - L2 LINE L2 -213 3059 2915 350 232 6 39 chr11 1320357 1320695 -149462858 + G-rich Low_complexity Low_complexity 1 326 0 206 337 6 33 chr11 1320704 1320885 -149462668 + (GGGTG)n Simple_repeat Simple_repeat 4 179 0 * 370 333 0 32 chr11 1320759 1320945 -149462608 + G-rich Low_complexity Low_complexity 1 180 0 2005 123 10 3 chr11 1321373 1321665 -149461888 - AluSq SINE Alu -19 294 1 265 232 66 60 chr11 1321713 1321864 -149461689 - L1MC5 LINE L1 -933 7028 6877 387 0 0 0 chr11 1322053 1322096 -149461457 + (CA)n Simple_repeat Simple_repeat 2 44 0 307 266 188 0 chr11 1322795 1322923 -149460630 + L1ME4a LINE L1 5967 6118 -3 486 343 26 22 chr11 1323115 1323383 -149460170 - L1MC4 LINE L1 -16 8026 7758 2635 102 5 30 chr11 1323496 1323869 -149459684 + THE1B LTR MaLR 1 364 0 4225 122 29 3 chr11 1323869 1324638 -149458915 + THE1B-int LTR MaLR 1 789 -791 2630 290 22 16 chr11 1325631 1326103 -149457450 + L1MC4a LINE L1 6477 6944 -864 2142 122 6 3 chr11 1326103 1326414 -149457139 + AluSx SINE Alu 1 312 0 2630 290 22 16 chr11 1326414 1327010 -149456543 + L1MC4a LINE L1 6944 7520 -288 280 264 27 0 chr11 1328060 1328149 -149455404 + MIR3 SINE MIR 63 157 -51 243 246 35 0 chr11 1328786 1328843 -149454710 + MIR SINE MIR 64 122 -86 689 148 9 0 chr11 1329089 1329197 -149454356 + FRAM SINE Alu 62 170 -6 34 65 0 0 chr11 1329969 1330031 -149453522 + AT_rich Low_complexity Low_complexity 1 62 0 186 43 0 0 chr11 1330729 1330752 -149452801 + (CCCCAG)n Simple_repeat Simple_repeat 6 28 0 401 353 107 43 chr11 1331744 1332212 -149451341 - HAL1 LINE L1 -1206 1301 880 245 346 0 32 chr11 1332407 1332592 -149450961 + GA-rich Low_complexity Low_complexity 1 179 0 379 335 12 12 chr11 1333820 1333990 -149449563 + (TCCA)n Simple_repeat Simple_repeat 2 171 0 225 65 0 0 chr11 1335204 1335235 -149448318 + (GGGA)n Simple_repeat Simple_repeat 4 34 0 856 298 79 74 chr11 1336795 1337023 -149446530 - L1MC5 LINE L1 -397 7564 7339 231 61 0 0 chr11 1337023 1337056 -149446497 + (TCCA)n Simple_repeat Simple_repeat 1 33 0 856 298 79 74 chr11 1337056 1337818 -149445735 - L1MC5 LINE L1 -622 7339 6555 1412 241 33 9 chr11 1337895 1338322 -149445231 - L1PA16 LINE L1 -5 6161 5725 1715 189 5 28 chr11 1338606 1338961 -149444592 + L1P LINE L1 4978 5323 -823 2081 118 7 0 chr11 1338961 1339249 -149444304 + AluSc SINE Alu 1 290 -19 1715 189 5 28 chr11 1339249 1339328 -149444225 + L1P LINE L1 5323 5402 -744 1250 132 21 13 chr11 1339328 1339563 -149443990 + THE1A LTR MaLR 1 237 -118 676 66 0 0 chr11 1339563 1339654 -149443899 + AluSp/q SINE Alu 215 305 -8 953 70 0 0 chr11 1339654 1339782 -149443771 + THE1A LTR MaLR 228 355 0 4757 94 35 0 chr11 1339783 1340506 -149443047 + THE1A-int LTR MaLR 3 750 -830 1342 126 13 4 chr11 1340506 1340736 -149442817 - THE1A LTR MaLR -123 232 1 3303 79 2 4 chr11 1340736 1341205 -149442348 - THE1A-int LTR MaLR 0 1580 1113 415 113 16 0 chr11 1341208 1341270 -149442283 - AluJb SINE Alu -83 229 167 2062 116 0 38 chr11 1342482 1342802 -149440751 + AluSx SINE Alu 1 308 -4 1213 215 95 31 chr11 1342860 1343170 -149440383 - MLT1C LTR MaLR -52 415 74 2037 147 0 3 chr11 1343170 1343483 -149440070 + AluJb SINE Alu 1 312 0 1213 215 95 31 chr11 1343483 1343562 -149439991 - MLT1C LTR MaLR -393 74 1 1342 174 89 0 chr11 1344096 1344367 -149439186 - MLT1C LTR MaLR -2 430 170 26 0 0 27 chr11 1344370 1344383 -149439170 + AT_rich Low_complexity Low_complexity 1 13 -23 2172 84 7 0 chr11 1344383 1344670 -149438883 + AluSp SINE Alu 1 289 -24 26 0 0 27 chr11 1344670 1344693 -149438860 + AT_rich Low_complexity Low_complexity 13 36 0 204 40 0 0 chr11 1344696 1344721 -149438832 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 835 175 7 13 chr11 1344723 1344877 -149438676 - FRAM SINE Alu -30 146 1 811 118 77 29 chr11 1344877 1345047 -149438506 - MLT1C LTR MaLR -289 178 1 850 158 0 0 chr11 1345251 1345384 -149438169 - AluSq/x SINE Alu -180 133 1 2367 90 0 0 chr11 1345868 1346178 -149437375 - AluSx SINE Alu -2 310 1 979 188 0 0 chr11 1346229 1346399 -149437154 - FRAM SINE Alu -10 166 1 290 288 39 10 chr11 1348480 1348657 -149434896 + MIR SINE MIR 6 241 -21 2012 55 76 7 chr11 1349017 1349292 -149434261 + AluY SINE Alu 1 294 -17 708 290 43 24 chr11 1349628 1349883 -149433670 - MIR SINE MIR -1 261 2 341 277 36 0 chr11 1350714 1350826 -149432727 - MER5A DNA MER1_type -38 151 36 2253 72 3 0 chr11 1350926 1351254 -149432299 + AluSx SINE Alu 1 312 0 33 25 0 0 chr11 1351933 1351973 -149431580 + AT_rich Low_complexity Low_complexity 1 40 0 210 321 94 19 chr11 1352088 1352194 -149431359 - MIR SINE MIR -25 237 124 252 276 115 0 chr11 1352346 1352433 -149431120 - L1ME4a LINE L1 -3 6118 6022 457 267 15 0 chr11 1355042 1355177 -149428376 - MER67B LTR ERV1 0 661 525 978 176 0 0 chr11 1355177 1355373 -149428180 + FRAM SINE Alu 1 176 0 516 280 131 27 chr11 1355373 1355790 -149427763 - MER67B LTR ERV1 -128 533 34 1060 174 0 0 chr11 1355938 1356099 -149427454 + U1 snRNA snRNA 1 161 -4 617 209 199 31 chr11 1356136 1356332 -149427221 - L1MB5 LINE L1 -18 6156 5928 2496 57 0 0 chr11 1357163 1357464 -149426089 - AluY SINE Alu -10 301 1 2177 75 0 0 chr11 1358896 1359177 -149424376 + AluY SINE Alu 1 281 -30 1896 123 50 0 chr11 1359765 1360042 -149423511 + AluSg SINE Alu 1 291 -19 696 150 0 9 chr11 1361923 1362036 -149421517 + AluY SINE Alu 184 295 -16 379 263 177 7 chr11 1362970 1363175 -149420378 + MIR SINE MIR 23 262 0 2247 161 68 12 chr11 1364078 1364487 -149419066 - Tigger2a DNA MER2_type -1 433 2 413 245 93 16 chr11 1365966 1366134 -149417419 - MIR SINE MIR -37 171 8 382 102 0 0 chr11 1367449 1367508 -149416045 - L1MB2 LINE L1 0 6171 6113 2405 257 45 14 chr11 1367532 1368145 -149415408 - L1MB5 LINE L1 -282 5901 5308 932 278 141 43 chr11 1368145 1368655 -149414898 - MER68 LTR ERV1 -2 560 1 2405 257 45 14 chr11 1368655 1368680 -149414873 - L1MB5 LINE L1 -875 5308 5538 1781 176 0 7 chr11 1368680 1368981 -149414572 + AluJo SINE Alu 1 299 -13 2405 257 45 14 chr11 1368981 1369177 -149414376 - L1MB5 LINE L1 -644 5539 5351 2008 129 88 16 chr11 1369268 1369632 -149413921 + MSTC LTR MaLR 1 390 -38 2044 114 0 20 chr11 1369632 1369931 -149413622 + AluSc SINE Alu 1 293 -16 2269 93 7 0 chr11 1369945 1370255 -149413298 + AluSx SINE Alu 1 312 0 201 200 20 0 chr11 1370259 1370309 -149413244 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 801 193 0 0 chr11 1370381 1370516 -149413037 + AluJo SINE Alu 1 135 -177 26 0 0 0 chr11 1370516 1370542 -149413011 + AT_rich Low_complexity Low_complexity 1 26 0 841 305 98 82 chr11 1370671 1371399 -149412154 - L1MEd LINE L1 -2919 3210 2472 1802 181 75 14 chr11 1371405 1371820 -149411733 - L1MC1 LINE L1 -5 6328 5889 945 221 4 65 chr11 1371862 1372093 -149411460 - MER21B LTR ERV1 -72 791 575 1987 112 0 0 chr11 1372094 1372371 -149411182 + AluSc SINE Alu 1 277 -32 546 91 0 0 chr11 1372371 1372448 -149411105 + (GGAA)n Simple_repeat Simple_repeat 3 79 0 2652 169 27 4 chr11 1372453 1372932 -149410621 - L1MCa LINE L1 -5930 496 7 410 323 65 46 chr11 1373098 1373885 -149409668 - L1MEd LINE L1 -4845 1465 642 8751 41 2 1 chr11 1375981 1376987 -149406566 - LTR13 LTR ERVK 0 1007 1 2540 174 36 11 chr11 1377947 1378423 -149405130 - L1MA4 LINE L1 -3 6297 5810 2192 113 0 0 chr11 1378910 1379211 -149404342 + AluSx SINE Alu 6 306 -6 1971 147 0 0 chr11 1379685 1379984 -149403569 + AluJo SINE Alu 1 299 -13 277 295 124 30 chr11 1380012 1380243 -149403310 + L1M4 LINE L1 2820 3028 -3118 2360 80 0 0 chr11 1380243 1380543 -149403010 + AluSg SINE Alu 2 301 -9 277 295 124 30 chr11 1380543 1380748 -149402805 + L1M4 LINE L1 3028 3297 -2849 1556 176 11 0 chr11 1380751 1381012 -149402541 + AluJb SINE Alu 13 276 -36 243 103 0 0 chr11 1381012 1381051 -149402502 + (TATG)n Simple_repeat Simple_repeat 4 42 0 1583 238 65 19 chr11 1381865 1382394 -149401159 - LTR26E LTR ERV1 0 622 1 239 238 119 16 chr11 1382728 1382854 -149400699 + L1ME4a LINE L1 5974 6112 -9 247 344 41 16 chr11 1384385 1384507 -149399046 + MIR3 SINE MIR 77 201 -7 2081 87 3 48 chr11 1384709 1385019 -149398534 - AluSg SINE Alu -14 296 1 215 299 39 13 chr11 1385462 1385539 -149398014 + MIR SINE MIR 18 96 -166 2303 82 3 3 chr11 1386766 1387072 -149396481 - AluSp SINE Alu -7 306 1 1429 197 24 7 chr11 1387521 1387816 -149395737 + AluJb SINE Alu 1 300 -12 2331 84 0 10 chr11 1387911 1388221 -149395332 + AluY SINE Alu 2 308 -3 270 176 0 0 chr11 1390463 1390514 -149393039 - AluSg SINE Alu -1 307 257 1762 101 4 19 chr11 1390607 1390864 -149392689 - AluSg SINE Alu -57 253 1 2222 77 11 0 chr11 1390987 1391272 -149392281 + AluSp SINE Alu 7 294 -19 2048 99 0 0 chr11 1391281 1391554 -149391999 + AluSc SINE Alu 37 309 0 366 294 52 0 chr11 1392298 1392451 -149391102 - MER20 DNA MER1_type -2 217 57 2232 45 0 28 chr11 1392800 1393108 -149390445 - AluY SINE Alu 0 300 1 180 382 67 0 chr11 1393291 1393380 -149390173 - MIR SINE MIR -10 252 158 1509 214 38 3 chr11 1394857 1395226 -149388327 - L1MB3 LINE L1 -43 6140 5759 2276 111 0 0 chr11 1395796 1396093 -149387460 - AluSc SINE Alu -12 297 1 2174 103 43 10 chr11 1397953 1398255 -149385298 - AluSx SINE Alu 0 312 1 877 180 0 0 chr11 1398265 1398426 -149385127 - L1MA4 LINE L1 -6 6294 6134 1888 119 83 4 chr11 1398522 1398799 -149384754 + AluSx SINE Alu 2 300 -12 216 0 0 0 chr11 1398910 1398934 -149384619 + (CAGGG)n Simple_repeat Simple_repeat 3 26 0 2401 92 0 7 chr11 1399301 1399604 -149383949 - AluSg SINE Alu -9 301 1 289 289 67 19 chr11 1400949 1401053 -149382500 + L2 LINE L2 2281 2389 -925 366 299 98 40 chr11 1401071 1401245 -149382308 + L2 LINE L2 2292 2475 -839 255 296 49 43 chr11 1404268 1404430 -149379123 + L1MD2 LINE L1 5683 5845 -1963 25 0 0 0 chr11 1404453 1404478 -149379075 + AT_rich Low_complexity Low_complexity 1 25 0 446 193 44 9 chr11 1404520 1404637 -149378916 - MLT1G1 LTR MaLR 0 595 429 425 296 29 39 chr11 1404738 1404944 -149378609 - MLT1G1 LTR MaLR -331 259 56 2162 94 0 0 chr11 1405219 1405485 -149378068 - AluSx SINE Alu -46 266 1 336 301 147 19 chr11 1405506 1405825 -149377728 + L1MC4a LINE L1 6504 6863 -945 599 270 60 27 chr11 1405835 1406201 -149377352 + L1MD2 LINE L1 5835 6267 -92 301 195 5 0 chr11 1406231 1406291 -149377262 + L1MC4 LINE L1 6856 7010 -1032 1256 173 13 9 chr11 1406292 1406518 -149377035 + AluJo SINE Alu 85 311 -1 312 266 71 48 chr11 1406629 1406841 -149376712 + L1MC4 LINE L1 7032 7207 -754 239 236 28 28 chr11 1407070 1407142 -149376411 - MER5A DNA MER1_type -89 100 29 412 322 78 43 chr11 1407158 1407429 -149376124 + L1MC5 LINE L1 7322 7609 -352 2384 71 30 7 chr11 1407429 1407726 -149375827 + AluSp SINE Alu 1 304 -9 412 322 78 43 chr11 1407726 1407799 -149375754 + L1MC5 LINE L1 7609 7678 -283 21 0 0 0 chr11 1408625 1408646 -149374907 + AT_rich Low_complexity Low_complexity 1 21 0 206 284 90 0 chr11 1409156 1409223 -149374330 - L2 LINE L2 -30 3242 3170 206 256 0 0 chr11 1409442 1409485 -149374068 + MER5B DNA MER1_type 1 43 -135 1530 161 12 24 chr11 1409486 1409740 -149373813 - AluJo SINE Alu -19 293 43 229 175 0 0 chr11 1409741 1409781 -149373772 - MLT1C LTR MaLR -354 113 74 2564 39 3 10 chr11 1410258 1410564 -149372989 - AluY SINE Alu -7 304 1 1237 177 85 35 chr11 1410564 1410847 -149372706 - AluJb SINE Alu -4 298 2 609 139 0 0 chr11 1410852 1410938 -149372615 - FLAM_A SINE Alu -17 125 40 40 49 0 0 chr11 1412209 1412270 -149371283 + GC_rich Low_complexity Low_complexity 1 61 0 216 200 0 91 chr11 1412285 1412395 -149371158 + G-rich Low_complexity Low_complexity 3 102 0 513 256 34 59 chr11 1413576 1413775 -149369778 - MIR SINE MIR -28 234 37 375 272 258 14 chr11 1415893 1416110 -149367443 - L2 LINE L2 -18 3295 3026 305 309 32 16 chr11 1416504 1416627 -149366926 - L2 LINE L2 -9 3304 3180 2415 79 3 7 chr11 1416642 1416945 -149366608 - AluSx SINE Alu -10 302 1 603 177 0 71 chr11 1416972 1417113 -149366440 + FLAM_C SINE Alu 1 131 -2 2196 87 30 33 chr11 1417498 1417798 -149365755 + AluSq SINE Alu 3 301 -12 2271 129 0 0 chr11 1418016 1418327 -149365226 - AluSx SINE Alu -1 311 1 827 161 111 5 chr11 1418717 1418924 -149364629 - L1MA8 LINE L1 -2 6289 6057 2015 132 87 3 chr11 1419178 1419511 -149364042 + MER46B DNA MER2_type 1 236 0 192 301 75 32 chr11 1419620 1419713 -149363840 - MIR SINE MIR -61 201 105 2398 86 7 0 chr11 1419823 1420125 -149363428 - AluSp SINE Alu -9 304 1 908 178 0 46 chr11 1420226 1420400 -149363153 - FRAM SINE Alu -10 166 1 1470 134 20 35 chr11 1420404 1420658 -149362895 - AluSx SINE Alu -6 306 57 814 198 0 32 chr11 1420896 1421053 -149362500 + FRAM SINE Alu 1 152 -24 238 209 209 0 chr11 1421174 1421241 -149362312 - L2 LINE L2 -1 3312 3232 2240 106 3 0 chr11 1421369 1421671 -149361882 - AluSg SINE Alu -7 303 1 317 261 81 27 chr11 1421779 1421890 -149361663 + MIR SINE MIR 74 190 -72 236 189 151 0 chr11 1422157 1422210 -149361343 + L1ME LINE L1 5576 5636 -485 2326 85 7 0 chr11 1422570 1422865 -149360688 - AluSp SINE Alu -16 297 1 960 115 0 55 chr11 1422971 1423136 -149360417 - FRAM SINE Alu 0 176 21 1816 152 7 29 chr11 1423160 1423470 -149360083 - AluSx SINE Alu -6 306 4 1838 148 25 3 chr11 1423934 1424218 -149359335 + AluJo SINE Alu 1 290 -22 192 40 0 0 chr11 1424621 1424646 -149358907 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 2204 96 4 0 chr11 1424648 1424929 -149358624 - AluSq SINE Alu -31 282 1 720 218 84 6 chr11 1424936 1425115 -149358438 - L1ME2 LINE L1 0 6164 5972 323 250 68 104 chr11 1426299 1426402 -149357151 - L1MC5 LINE L1 -44 7917 7823 710 214 8 0 chr11 1426402 1426533 -149357020 - FLAM_A SINE Alu -1 132 1 323 250 68 104 chr11 1426533 1426621 -149356932 - L1MC5 LINE L1 -138 7823 7733 503 304 154 27 chr11 1426730 1427244 -149356309 - L1MC4 LINE L1 -251 7791 7213 23 0 0 0 chr11 1428121 1428144 -149355409 + AT_rich Low_complexity Low_complexity 1 23 0 572 237 18 0 chr11 1428855 1428969 -149354584 - FLAM_A SINE Alu -17 116 1 919 199 23 0 chr11 1429094 1429265 -149354288 - AluJo SINE Alu -18 294 120 1890 105 81 48 chr11 1429396 1429554 -149353999 - AluSx SINE Alu -7 305 154 568 130 0 0 chr11 1429554 1429646 -149353907 - L1PA8 LINE L1 -5 6167 6076 212 0 36 0 chr11 1429652 1429680 -149353873 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1890 105 81 48 chr11 1429680 1429809 -149353744 - AluSx SINE Alu -162 150 1 902 35 18 0 chr11 1430177 1430290 -149353263 + L1PA4 LINE L1 6041 6155 0 1801 174 3 0 chr11 1430355 1430642 -149352911 + AluJb SINE Alu 1 288 -24 1846 156 17 13 chr11 1431432 1431733 -149351820 - AluJo SINE Alu -10 302 1 246 233 194 61 chr11 1431736 1432081 -149351472 - L1ME2 LINE L1 -469 5652 5256 21 0 0 0 chr11 1432096 1432117 -149351436 + AT_rich Low_complexity Low_complexity 1 21 0 1513 210 93 0 chr11 1432347 1432681 -149350872 - MER47A DNA MER2_type 0 366 2 1791 150 61 10 chr11 1435147 1435440 -149348113 + AluJb SINE Alu 1 308 -4 189 206 0 0 chr11 1436091 1436125 -149347428 + MER5B DNA MER1_type 20 53 -125 2513 57 6 22 chr11 1436779 1437095 -149346458 - AluY SINE Alu 0 311 1 638 247 97 0 chr11 1437149 1437303 -149346250 - FAM SINE Alu -6 169 1 1314 171 122 49 chr11 1437874 1438259 -149345294 + L1MA5 LINE L1 5883 6295 -5 2224 58 68 4 chr11 1438608 1438886 -149344667 + AluY SINE Alu 1 296 -15 1422 184 141 3 chr11 1438915 1439220 -149344333 + MER7A DNA MER2_type 1 345 -1 308 319 28 14 chr11 1441263 1441309 -149342244 - L1MCa LINE L1 -4049 2377 2333 2599 78 0 0 chr11 1441309 1441618 -149341935 - AluSc SINE Alu 0 309 1 308 319 28 14 chr11 1441618 1441715 -149341838 - L1MCa LINE L1 -4093 2333 2232 313 308 8 53 chr11 1442183 1442316 -149341237 - L1ME LINE L1 -399 5722 5596 238 158 0 53 chr11 1442329 1442386 -149341167 - AluSp SINE Alu -132 171 118 927 128 0 0 chr11 1442606 1442739 -149340814 + FLAM_C SINE Alu 1 133 0 451 300 137 13 chr11 1443346 1443573 -149339980 - MIR SINE MIR -3 259 5 276 302 39 34 chr11 1443594 1443773 -149339780 - L1ME LINE L1 -386 5735 5556 25 0 0 0 chr11 1446683 1446708 -149336845 + AT_rich Low_complexity Low_complexity 1 25 0 296 254 16 49 chr11 1447366 1447488 -149336065 + L1MB8 LINE L1 6055 6172 -6 1307 178 91 56 chr11 1448787 1448934 -149334619 + AluJo SINE Alu 1 141 -161 1870 137 10 33 chr11 1448934 1449241 -149334312 + AluSx SINE Alu 1 300 -12 1307 178 91 56 chr11 1449241 1449379 -149334174 + AluJo SINE Alu 141 296 -6 729 205 119 11 chr11 1450916 1451101 -149332452 + MER3 DNA MER1_type 1 205 -4 345 296 271 0 chr11 1451276 1451475 -149332078 + MIR SINE MIR 2 254 -8 343 318 77 51 chr11 1452814 1453009 -149330544 + L1ME LINE L1 5582 5781 -340 292 197 314 0 chr11 1457186 1457323 -149326230 - MER46A DNA MER2_type -56 180 1 335 250 23 0 chr11 1462031 1462119 -149321434 + L1ME2 LINE L1 6066 6155 -9 2173 108 3 0 chr11 1462130 1462425 -149321128 - AluSx SINE Alu -16 296 1 210 71 0 0 chr11 1463769 1463797 -149319756 + (CAGCC)n Simple_repeat Simple_repeat 1 28 0 235 278 0 0 chr11 1463895 1463949 -149319604 + MIR SINE MIR 96 149 -113 429 232 84 80 chr11 1464320 1464557 -149318996 - MLT1D LTR MaLR -260 245 8 212 0 36 0 chr11 1464713 1464741 -149318812 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1792 171 3 3 chr11 1464743 1465042 -149318511 - AluSx SINE Alu -5 307 9 297 211 44 22 chr11 1465411 1465501 -149318052 - L1MB3 LINE L1 -2 6181 6090 1229 202 47 0 chr11 1467070 1467347 -149316206 - L1MB3 LINE L1 -75 6108 5819 2174 92 0 78 chr11 1467347 1467682 -149315871 - AluSq SINE Alu -3 310 2 2221 64 43 0 chr11 1467756 1468037 -149315516 - AluY SINE Alu -16 295 3 668 204 0 29 chr11 1468047 1468184 -149315369 - FLAM_C SINE Alu 0 133 1 200 322 25 34 chr11 1468203 1468321 -149315232 + MER5A DNA MER1_type 46 162 -27 1820 144 0 20 chr11 1468774 1469072 -149314481 - AluJo SINE Alu -20 292 1 267 217 17 0 chr11 1470738 1470798 -149312755 + MIR SINE MIR 86 146 -62 369 216 11 0 chr11 1472682 1472770 -149310783 + MER45A DNA AcHobo 69 157 -21 236 217 0 0 chr11 1473273 1473319 -149310234 - MIR SINE MIR -110 152 107 261 75 0 0 chr11 1473881 1473921 -149309632 + (CGGGG)n Simple_repeat Simple_repeat 5 44 0 1918 183 40 0 chr11 1476514 1476837 -149306716 + MER1B DNA MER1_type 2 337 0 2286 76 0 20 chr11 1477511 1477812 -149305741 - AluSc SINE Alu -14 295 1 281 156 47 55 chr11 1480574 1480702 -149302851 + (CACCC)n Simple_repeat Simple_repeat 3 129 0 2349 48 0 32 chr11 1482022 1482332 -149301221 - AluY SINE Alu -11 300 1 289 324 133 6 chr11 1483485 1483658 -149299895 - MIR SINE MIR -41 221 27 350 256 87 23 chr11 1484042 1484214 -149299339 + MLT1K LTR MaLR 163 345 -243 1538 150 58 0 chr11 1484294 1484554 -149298999 + AluJb SINE Alu 17 291 -21 208 244 0 0 chr11 1487966 1488011 -149295542 + (CA)n Simple_repeat Simple_repeat 1 45 0 211 243 27 40 chr11 1489128 1489202 -149294351 + MIR SINE MIR 20 92 -116 209 348 211 3 chr11 1492355 1492654 -149290899 + L2 LINE L2 2284 2644 -670 1464 205 166 27 chr11 1495631 1496041 -149287512 + MLT1C LTR MaLR 1 467 0 6057 45 6 0 chr11 1496396 1497212 -149286341 - L1PA6 LINE L1 0 6154 5334 187 223 97 39 chr11 1497248 1497351 -149286202 + L2 LINE L2 1518 1626 -1688 1610 53 18 0 chr11 1497613 1497840 -149285713 + L1PA5 LINE L1 5671 5901 -253 303 251 228 40 chr11 1497929 1498355 -149285198 + L2 LINE L2 2074 2579 -735 292 236 100 18 chr11 1498683 1498793 -149284760 - MIR SINE MIR -27 235 117 342 254 8 31 chr11 1501301 1501431 -149282122 + G-rich Low_complexity Low_complexity 1 127 0 2903 159 24 39 chr11 1502060 1502558 -149280995 + MER39B LTR ERV1 1 490 -163 2519 35 3 7 chr11 1502558 1502868 -149280685 - AluY SINE Alu -2 309 1 2903 159 24 39 chr11 1502868 1502992 -149280561 + MER39B LTR ERV1 490 614 -39 363 326 105 44 chr11 1503719 1504063 -149279490 - L2 LINE L2 -93 3179 2815 245 329 37 0 chr11 1504236 1504318 -149279235 - L2 LINE L2 -5 3308 3224 254 300 348 12 chr11 1504415 1505238 -149278315 - L2 LINE L2 -524 2790 1692 372 241 25 0 chr11 1506694 1506773 -149276780 + MER81 DNA DNA 17 97 -17 234 255 0 0 chr11 1507071 1507118 -149276435 + (TG)n Simple_repeat Simple_repeat 1 47 0 1522 177 65 31 chr11 1507407 1507701 -149275852 - AluJo SINE Alu -8 304 1 1858 142 6 31 chr11 1508555 1508872 -149274681 + AluSx SINE Alu 1 309 -3 521 308 66 31 chr11 1509044 1509271 -149274282 + MIR SINE MIR 21 255 -7 2263 92 10 0 chr11 1509462 1509757 -149273796 + AluSg SINE Alu 1 298 -12 459 95 0 0 chr11 1510022 1510096 -149273457 - MIR SINE MIR -123 139 66 247 215 0 32 chr11 1510617 1510710 -149272843 + GA-rich Low_complexity Low_complexity 3 92 0 181 237 51 0 chr11 1510910 1510969 -149272584 - MIR SINE MIR -61 147 86 380 250 0 0 chr11 1511427 1511511 -149272042 + MIR SINE MIR 68 151 -57 416 323 38 0 chr11 1512994 1513152 -149270401 + MIR SINE MIR 85 248 -14 233 304 48 32 chr11 1513855 1513980 -149269573 + MIR SINE MIR 59 185 -77 1792 163 3 7 chr11 1514163 1514464 -149269089 - AluJb SINE Alu 0 312 13 256 275 75 0 chr11 1514761 1514881 -149268672 - MLT1J2 LTR MaLR -288 162 34 191 295 39 26 chr11 1515042 1515120 -149268433 - L3 LINE CR1 -220 1357 1279 306 73 0 0 chr11 1516392 1516433 -149267120 + (TG)n Simple_repeat Simple_repeat 1 41 0 236 212 26 62 chr11 1516969 1517082 -149266471 + (CCGGG)n Simple_repeat Simple_repeat 2 110 0 206 266 0 0 chr11 1517107 1517171 -149266382 + G-rich Low_complexity Low_complexity 1 64 0 226 217 9 47 chr11 1517209 1517315 -149266238 + C-rich Low_complexity Low_complexity 1 102 0 213 125 62 0 chr11 1517336 1517384 -149266169 + (CGGGG)n Simple_repeat Simple_repeat 3 53 0 25 51 0 0 chr11 1517435 1517474 -149266079 + GC_rich Low_complexity Low_complexity 1 39 0 233 170 0 38 chr11 1517707 1517760 -149265793 + CT-rich Low_complexity Low_complexity 2 52 0 447 278 0 0 chr11 1518255 1518431 -149265122 + (CCCCAG)n Simple_repeat Simple_repeat 3 178 0 223 179 45 15 chr11 1518614 1518681 -149264872 + (CCCGG)n Simple_repeat Simple_repeat 3 71 0 31 44 0 0 chr11 1518886 1518931 -149264622 + GC_rich Low_complexity Low_complexity 1 45 0 23 0 0 0 chr11 1518955 1518978 -149264575 + GC_rich Low_complexity Low_complexity 1 23 0 39 92 0 0 chr11 1519055 1519164 -149264389 + GC_rich Low_complexity Low_complexity 1 109 0 261 119 0 0 chr11 1519669 1519711 -149263842 + (A)n Simple_repeat Simple_repeat 1 42 0 233 235 176 29 chr11 1521801 1521903 -149261650 + MIR3 SINE MIR 85 201 -7 260 326 132 21 chr11 1522203 1522347 -149261206 - MIR SINE MIR -102 160 1 239 302 52 10 chr11 1522860 1522956 -149260597 - L2 LINE L2 -40 3273 3174 3131 162 34 24 chr11 1523136 1523758 -149259795 - L1MC1 LINE L1 -166 6167 5540 400 341 97 19 chr11 1524023 1524343 -149259210 + MLT1I LTR MaLR 42 386 -23 1762 157 0 41 chr11 1524760 1525078 -149258475 + AluJb SINE Alu 1 305 -7 2188 104 0 0 chr11 1525080 1525377 -149258176 + AluY SINE Alu 1 297 -14 576 299 94 31 chr11 1525753 1525819 -149257734 - MLT1G1 LTR MaLR 0 595 535 2254 87 3 10 chr11 1525819 1526129 -149257424 + AluY SINE Alu 1 308 -3 576 299 94 31 chr11 1526129 1526526 -149257027 - MLT1G1 LTR MaLR -60 535 12 1849 151 3 10 chr11 1526636 1526927 -149256626 + AluJb SINE Alu 21 309 -3 296 283 42 17 chr11 1527184 1527304 -149256249 + (TATATG)n Simple_repeat Simple_repeat 2 124 0 313 289 66 33 chr11 1527394 1527546 -149256007 - L1MC5 LINE L1 -45 7916 7760 859 175 0 0 chr11 1527547 1527690 -149255863 + FLAM_C SINE Alu 1 143 0 252 294 59 12 chr11 1528648 1528733 -149254820 + MIR3 SINE MIR 109 197 -11 954 187 88 75 chr11 1529104 1529170 -149254383 + MLT1A1 LTR MaLR 19 83 -282 1513 173 47 20 chr11 1529170 1529471 -149254082 + AluJo SINE Alu 1 309 -3 2050 126 3 19 chr11 1529472 1529789 -149253764 + AluSx SINE Alu 1 312 0 954 187 88 75 chr11 1529789 1530025 -149253528 + MLT1A1 LTR MaLR 82 327 -38 582 91 0 0 chr11 1530026 1530103 -149253450 + AluSp SINE Alu 56 132 -181 2124 109 3 0 chr11 1530105 1530431 -149253122 + AluSp SINE Alu 1 327 0 251 170 21 0 chr11 1530432 1530479 -149253074 + MLT1A1 LTR MaLR 410 457 0 2141 102 0 57 chr11 1530670 1531002 -149252551 + AluSq SINE Alu 1 313 0 218 265 15 0 chr11 1533590 1533658 -149249895 + (TCCG)n Simple_repeat Simple_repeat 2 70 0 258 105 0 0 chr11 1534587 1534625 -149248928 + (TGAA)n Simple_repeat Simple_repeat 2 39 0 214 200 0 18 chr11 1535185 1535240 -149248313 + T-rich Low_complexity Low_complexity 2 55 0 1976 176 43 5 chr11 1535897 1536273 -149247280 - MLT1B LTR MaLR 0 390 1 196 354 13 0 chr11 1536886 1536965 -149246588 + MIR SINE MIR 45 124 -84 398 304 33 76 chr11 1537401 1537585 -149245968 - L1ME4a LINE L1 -2 6119 5944 24 0 0 0 chr11 1537599 1537623 -149245930 + AT_rich Low_complexity Low_complexity 1 24 0 1758 140 0 29 chr11 1537623 1537901 -149245652 - AluJo SINE Alu -24 288 19 764 186 0 0 chr11 1537917 1538041 -149245512 - FLAM_A SINE Alu -9 124 1 304 345 90 55 chr11 1539293 1539491 -149244062 - HAL1 LINE L1 -1204 1303 1090 1495 177 75 17 chr11 1539491 1539785 -149243768 - AluJb SINE Alu 0 312 2 304 345 90 55 chr11 1539785 1539876 -149243677 - HAL1 LINE L1 -1417 1090 1004 43 20 0 0 chr11 1540374 1540424 -149243129 + GC_rich Low_complexity Low_complexity 1 50 0 23 68 0 0 chr11 1540514 1540558 -149242995 + GC_rich Low_complexity Low_complexity 1 44 0 30 27 0 0 chr11 1540873 1540910 -149242643 + GC_rich Low_complexity Low_complexity 1 37 0 259 121 45 15 chr11 1540949 1541015 -149242538 + (CCGGG)n Simple_repeat Simple_repeat 3 70 0 182 236 91 0 chr11 1541305 1541360 -149242193 + L2 LINE L2 1880 1939 -1375 191 356 11 11 chr11 1543444 1543531 -149240022 - L2 LINE L2 -221 3051 2965 235 302 93 0 chr11 1545544 1545673 -149237880 - LTR48 LTR ERV1 -68 719 579 1771 145 35 10 chr11 1546872 1547161 -149236392 + AluJo SINE Alu 1 296 -16 239 333 21 0 chr11 1547299 1547395 -149236158 - MIR SINE MIR -81 181 84 317 247 6 0 chr11 1548827 1548993 -149234560 + (TG)n Simple_repeat Simple_repeat 1 167 0 198 207 0 0 chr11 1549009 1549067 -149234486 + (TG)n Simple_repeat Simple_repeat 2 59 0 2321 51 27 10 chr11 1550915 1551209 -149232344 + AluY SINE Alu 1 299 -12 230 238 32 16 chr11 1551618 1551681 -149231872 - L2 LINE L2 0 3272 3209 689 321 11 0 chr11 1560334 1560521 -149223032 + MIR SINE MIR 46 234 -28 245 327 154 29 chr11 1561850 1562058 -149221495 + L2 LINE L2 2572 2805 -509 210 372 75 21 chr11 1562191 1562379 -149221174 + L2 LINE L2 3102 3299 -14 1902 147 180 11 chr11 1562962 1563329 -149220224 + Tigger2a DNA MER2_type 4 432 -2 205 299 73 15 chr11 1565511 1565648 -149217905 + L2 LINE L2 2915 3059 -213 217 259 103 52 chr11 1566988 1567162 -149216391 + L2 LINE L2 454 636 -2678 266 299 159 75 chr11 1567327 1567792 -149215761 + L2 LINE L2 2804 3307 -6 285 29 0 0 chr11 1567874 1567908 -149215645 + (TG)n Simple_repeat Simple_repeat 1 34 0 251 210 7 91 chr11 1569046 1569189 -149214364 + (CACGT)n Simple_repeat Simple_repeat 5 135 0 224 202 8 40 chr11 1571578 1571702 -149211851 + G-rich Low_complexity Low_complexity 1 120 0 194 336 58 73 chr11 1571747 1571884 -149211669 - L2 LINE L2 -116 3156 3022 225 441 11 0 chr11 1572139 1572318 -149211235 - MIR SINE MIR -46 216 36 213 261 0 0 chr11 1572409 1572455 -149211098 - MIR3 SINE MIR -54 154 109 516 62 0 83 chr11 1573223 1573368 -149210185 + (TCC)n Simple_repeat Simple_repeat 1 133 0 2346 237 77 46 chr11 1573493 1574487 -149209066 - HAL1 LINE L1 -92 2415 1392 406 315 36 27 chr11 1574494 1574716 -149208837 - HAL1 LINE L1 -1893 614 391 406 275 42 75 chr11 1574765 1575005 -149208548 - HAL1 LINE L1 -2270 237 6 222 384 138 15 chr11 1575078 1575609 -149207944 + L2 LINE L2 1950 2545 -769 571 340 41 16 chr11 1575671 1575986 -149207567 + MLT1J LTR MaLR 41 363 -148 184 268 0 0 chr11 1576508 1576549 -149207004 + L2 LINE L2 3201 3241 -31 267 289 198 0 chr11 1577613 1577734 -149205819 + L2 LINE L2 3119 3263 -9 226 340 178 28 chr11 1578564 1579103 -149204450 + L2 LINE L2 2072 2691 -623 281 233 0 22 chr11 1579134 1579224 -149204329 + (TG)n Simple_repeat Simple_repeat 1 88 0 697 247 142 78 chr11 1579650 1580201 -149203352 - HAL1 LINE L1 -585 1922 1337 352 288 59 13 chr11 1580212 1580448 -149203105 - HAL1 LINE L1 -1244 1263 1017 197 313 119 99 chr11 1580563 1580965 -149202588 + L2 LINE L2 2817 3226 -46 1514 194 110 22 chr11 1580972 1581416 -149202137 - MLT1D LTR MaLR 0 505 23 264 30 0 0 chr11 1582700 1582733 -149200820 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 297 313 144 16 chr11 1582874 1583504 -149200049 + L1 LINE L1 2771 3481 -2665 366 333 165 12 chr11 1583560 1583815 -149199738 + L1 LINE L1 3543 3836 -2310 227 326 63 0 chr11 1584066 1584161 -149199392 + L2 LINE L2 3136 3236 -36 234 62 0 0 chr11 1584166 1584198 -149199355 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 351 167 51 0 chr11 1585313 1585391 -149198162 + MER103 DNA DNA 18 99 -67 271 253 12 0 chr11 1586538 1586621 -149196932 - L2 LINE L2 -339 2974 2891 192 333 200 0 chr11 1588145 1588250 -149195303 + MIR SINE MIR 135 260 -2 342 159 0 0 chr11 1588615 1588684 -149194869 + CT-rich Low_complexity Low_complexity 1 69 0 * 389 239 17 6 chr11 1588673 1588849 -149194704 + (TCCA)n Simple_repeat Simple_repeat 3 180 0 698 208 12 0 chr11 1588860 1589293 -149194260 + (TCCA)n Simple_repeat Simple_repeat 1 438 0 254 235 10 0 chr11 1589309 1589411 -149194142 + (TCCA)n Simple_repeat Simple_repeat 2 104 0 190 372 35 26 chr11 1590147 1590260 -149193293 - L2 LINE L2 -20 3293 3180 325 299 75 21 chr11 1590464 1590705 -149192848 - L2 LINE L2 -427 2887 2634 322 188 35 0 chr11 1590941 1591026 -149192527 + GA-rich Low_complexity Low_complexity 4 91 0 1128 341 85 1 chr11 1592678 1593422 -149190131 + HAL1 LINE L1 977 1782 -725 417 352 20 52 chr11 1593617 1593867 -149189686 + HAL1b LINE L1 573 814 -534 482 144 19 0 chr11 1593982 1594086 -149189467 + HAL1b LINE L1 965 1070 -278 228 67 0 0 chr11 1594216 1594246 -149189307 + (CCCA)n Simple_repeat Simple_repeat 2 31 0 530 229 6 0 chr11 1594247 1594426 -149189127 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 207 69 0 0 chr11 1594679 1594708 -149188845 + (CAAT)n Simple_repeat Simple_repeat 3 31 0 208 410 35 0 chr11 1595221 1595365 -149188188 - MIR SINE MIR -23 239 91 214 319 0 30 chr11 1595496 1595631 -149187922 + G-rich Low_complexity Low_complexity 2 132 0 201 132 0 0 chr11 1596955 1596993 -149186560 + (TCCC)n Simple_repeat Simple_repeat 1 38 0 407 324 91 16 chr11 1597258 1597511 -149186042 - L1ME LINE L1 -311 5810 5539 821 251 5 5 chr11 1597595 1597794 -149185759 - MER58A DNA MER1_type 0 224 26 226 333 0 0 chr11 1598428 1598485 -149185068 + MIR SINE MIR 113 169 -93 320 267 103 0 chr11 1598885 1599001 -149184552 + MIR SINE MIR 15 142 -120 1046 261 46 4 chr11 1601588 1601921 -149181632 + MLT1A2 LTR MaLR 1 444 -23 321 290 73 17 chr11 1602547 1602694 -149180859 - MIR SINE MIR -62 146 5 224 295 71 36 chr11 1603240 1603352 -149180201 + MIR SINE MIR 31 146 -62 276 152 63 13 chr11 1603697 1603855 -149179698 + (CA)n Simple_repeat Simple_repeat 2 167 0 262 0 53 0 chr11 1603879 1603917 -149179636 + (CA)n Simple_repeat Simple_repeat 2 41 0 411 325 90 8 chr11 1604053 1604287 -149179266 + L2 LINE L2 2807 3059 -254 247 279 0 15 chr11 1604344 1604412 -149179141 + C-rich Low_complexity Low_complexity 2 68 0 1016 183 0 0 chr11 1609652 1609816 -149173737 - AluJo/FRAM SINE Alu -12 300 137 466 145 0 0 chr11 1609816 1609885 -149173668 - AluJ/FLAM SINE Alu -243 69 1 318 295 74 20 chr11 1610500 1610649 -149172904 + L2 LINE L2 2848 3004 -309 195 350 36 44 chr11 1612305 1612442 -149171111 - MIR3 SINE MIR -71 137 2 235 208 94 62 chr11 1612543 1612639 -149170914 - MIR SINE MIR -133 129 31 308 381 14 36 chr11 1613884 1614023 -149169530 - L1MC/D LINE L1 -2206 5602 5467 29 0 0 0 chr11 1615333 1615362 -149168191 + AT_rich Low_complexity Low_complexity 1 29 0 1354 186 48 11 chr11 1615366 1615720 -149167833 + Charlie5 DNA MER1_type 2235 2601 -11 1190 308 91 37 chr11 1615723 1617218 -149166335 + L1MEd LINE L1 113 1737 -4573 511 320 96 54 chr11 1617358 1617756 -149165797 + L1MEd LINE L1 1878 3318 -2811 5672 200 41 28 chr11 1617798 1619671 -149163882 + L1MEd LINE L1 3706 5600 -549 1521 283 63 67 chr11 1619674 1620915 -149162638 + L1M4 LINE L1 2558 3793 -2353 436 228 31 6 chr11 1621904 1622059 -149161494 + MIR SINE MIR 61 219 -43 188 151 170 19 chr11 1622110 1622163 -149161390 - MIR3 SINE MIR -52 156 96 258 81 0 0 chr11 1631423 1631460 -149152093 + (TC)n Simple_repeat Simple_repeat 2 38 0 218 358 47 34 chr11 1634605 1634753 -149148800 + MIR3 SINE MIR 34 183 -25 377 236 17 0 chr11 1635699 1635820 -149147733 + MLT1H LTR MaLR 1 143 -406 1966 112 34 0 chr11 1636012 1636281 -149147272 - AluSc SINE Alu -31 278 1 301 172 0 0 chr11 1636290 1636348 -149147205 + MLT1H LTR MaLR 492 549 0 533 261 119 42 chr11 1636644 1636955 -149146598 + MLT1H LTR MaLR 162 496 -53 588 332 160 27 chr11 1636958 1637220 -149146333 + L1ME LINE L1 721 1017 -5053 3577 263 87 76 chr11 1637253 1639315 -149144238 + L1ME LINE L1 2073 4111 -1969 1366 201 82 15 chr11 1639315 1639584 -149143969 + AluJo SINE Alu 1 287 -15 3577 263 87 76 chr11 1639584 1639762 -149143791 + L1ME LINE L1 4111 4286 -1794 782 189 8 0 chr11 1639762 1639894 -149143659 - FLAM_A SINE Alu 0 133 1 3577 263 87 76 chr11 1639894 1640259 -149143294 + L1ME LINE L1 4286 4707 -1373 1966 134 3 15 chr11 1640296 1640625 -149142928 - MER1B DNA MER1_type 0 339 15 471 318 52 20 chr11 1640703 1640955 -149142598 + L1ME LINE L1 4819 5078 -1002 3199 149 43 63 chr11 1641579 1642420 -149141133 + LTR1 LTR ERV1 1 785 0 3840 240 42 37 chr11 1644013 1646366 -149137187 - L1MD1 LINE L1 -13 6229 3753 855 160 0 7 chr11 1646421 1646565 -149136988 + FLAM_C SINE Alu 1 143 0 547 358 47 5 chr11 1646766 1647191 -149136362 - L1ME3A LINE L1 -288 5882 5440 552 301 77 34 chr11 1647383 1647437 -149136116 - L1ME3A LINE L1 -873 5273 5223 1587 224 78 51 chr11 1647437 1647612 -149135941 + MLT1D LTR MaLR 3 172 -333 1563 180 3 32 chr11 1647612 1647895 -149135658 + AluJo SINE Alu 1 275 -37 300 27 0 0 chr11 1647897 1647934 -149135619 + (CAA)n Simple_repeat Simple_repeat 3 39 0 1587 224 78 51 chr11 1647934 1648245 -149135308 + MLT1D LTR MaLR 172 505 0 552 301 77 34 chr11 1648245 1648814 -149134739 - L1ME3A LINE L1 -923 5223 4606 1059 148 64 49 chr11 1648983 1649268 -149134285 - L1M4 LINE L1 -664 5514 5227 470 168 32 0 chr11 1649502 1649597 -149133956 + L1MB7 LINE L1 6035 6132 -52 1578 209 50 47 chr11 1650374 1650738 -149132815 + MLT1A1 LTR MaLR 1 365 0 259 302 20 20 chr11 1650846 1650995 -149132558 + (CAGCT)n Simple_repeat Simple_repeat 4 152 0 201 159 0 0 chr11 1650998 1651042 -149132511 + (CACAA)n Simple_repeat Simple_repeat 3 46 0 931 139 114 0 chr11 1653190 1653348 -149130205 - AluSg/x SINE Alu -11 301 126 2042 58 41 55 chr11 1653348 1653641 -149129912 - AluY SINE Alu -22 289 1 415 271 11 0 chr11 1653677 1653792 -149129761 - MIR SINE MIR -63 145 32 1905 249 44 7 chr11 1656375 1656962 -149126591 + L1MC3 LINE L1 7177 7785 0 2114 120 0 0 chr11 1656979 1657287 -149126266 + AluSx SINE Alu 1 308 0 230 360 9 18 chr11 1657661 1657775 -149125778 + L1M4 LINE L1 4265 4377 -1769 373 347 9 14 chr11 1657846 1658065 -149125488 + L1M4 LINE L1 4479 4696 -1450 341 327 45 0 chr11 1658518 1658628 -149124925 + L2 LINE L2 3199 3313 0 949 199 24 74 chr11 1662113 1662570 -149120983 + MLT1D LTR MaLR 19 501 -4 253 233 47 0 chr11 1662734 1662820 -149120733 + MER113 DNA MER1_type? 50 139 -382 231 293 0 0 chr11 1664783 1664841 -149118712 + L2 LINE L2 3004 3061 -211 1213 226 29 7 chr11 1667226 1667535 -149116018 + MLT1B LTR MaLR 58 373 -17 191 345 17 0 chr11 1668322 1668380 -149115173 - MIR SINE MIR -113 149 91 459 35 0 0 chr11 1669305 1669362 -149114191 + (GA)n Simple_repeat Simple_repeat 1 57 0 300 27 0 0 chr11 1669361 1669398 -149114155 + (TG)n Simple_repeat Simple_repeat 1 37 0 * 222 37 0 0 chr11 1669950 1669977 -149113576 + (TGGGGG)n Simple_repeat Simple_repeat 1 27 0 258 169 34 17 chr11 1670068 1670127 -149113426 - MIR SINE MIR -60 148 89 730 193 76 6 chr11 1672730 1672901 -149110652 + MLT1D LTR MaLR 319 501 -4 409 270 113 0 chr11 1672909 1673068 -149110485 + L2 LINE L2 2525 2701 -613 290 306 187 8 chr11 1673118 1673353 -149110200 + L2 LINE L2 2857 3133 -180 1011 213 157 28 chr11 1673374 1673661 -149109892 + MER2 DNA MER2_type 1 324 -21 187 156 89 44 chr11 1673725 1673770 -149109783 + L2 LINE L2 3223 3269 -3 384 289 19 0 chr11 1673784 1673888 -149109665 - MIR SINE MIR -47 215 110 278 308 108 10 chr11 1675047 1675242 -149108311 - L2 LINE L2 -371 2943 2730 438 291 82 10 chr11 1675416 1675612 -149107941 + LTR33 LTR ERVL 15 224 -297 359 246 164 25 chr11 1675809 1675931 -149107622 - MIR SINE MIR -100 162 24 204 313 30 15 chr11 1679764 1679831 -149103722 - MIR SINE MIR -108 154 87 362 300 196 9 chr11 1680537 1680767 -149102786 + L2 LINE L2 1874 2146 -1168 189 94 0 0 chr11 1683660 1683692 -149099861 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 891 187 123 25 chr11 1683724 1683927 -149099626 - AluJo SINE Alu -76 236 14 203 310 70 30 chr11 1683971 1684071 -149099482 - MIR SINE MIR -89 173 70 197 319 42 0 chr11 1684181 1684253 -149099300 + MER5A DNA MER1_type 67 141 -48 190 329 41 0 chr11 1688637 1688710 -149094843 - L2 LINE L2 -18 3295 3220 309 346 31 25 chr11 1690820 1690979 -149092574 + L2 LINE L2 3113 3272 0 4687 173 34 12 chr11 1691976 1693708 -149089845 + L1MB7 LINE L1 4424 6175 -9 308 286 93 39 chr11 1695340 1695522 -149088031 + MIR SINE MIR 3 194 -14 2251 215 122 8 chr11 1696573 1697080 -149086473 - MLT1F1 LTR MaLR -2 565 1 190 322 46 35 chr11 1697237 1697324 -149086229 + L2 LINE L2 3214 3301 -12 492 297 92 20 chr11 1698443 1698692 -149084861 + L2 LINE L2 2551 2817 -497 190 358 43 12 chr11 1699716 1699878 -149083675 - MIR3 SINE MIR -8 200 34 197 256 23 0 chr11 1700924 1700967 -149082586 + L2 LINE L2 3180 3223 -90 913 295 70 17 chr11 1701375 1701677 -149081876 - MER45C DNA AcHobo -616 337 20 25 51 0 0 chr11 1702405 1702444 -149081109 + GC_rich Low_complexity Low_complexity 1 39 0 250 323 114 30 chr11 1704926 1705093 -149078460 + L2 LINE L2 3119 3299 -14 894 287 42 51 chr11 1705319 1705768 -149077785 + L1M4 LINE L1 3661 4105 -2041 588 224 8 0 chr11 1705860 1705994 -149077559 - Charlie1 DNA MER1_type -4 2757 2623 * 687 218 198 0 chr11 1705978 1706180 -149077373 - Charlie1 DNA MER1_type -2519 242 1 468 349 99 29 chr11 1706274 1707080 -149076473 + L1M4 LINE L1 4308 5170 -976 295 186 29 14 chr11 1707101 1707171 -149076382 + Charlie1 DNA MER1_type 68 138 -2623 438 328 90 16 chr11 1707298 1707554 -149075999 + L1M4 LINE L1 5370 5644 -534 358 310 213 18 chr11 1708049 1708542 -149075011 + L2 LINE L2 2718 3306 -7 920 227 58 5 chr11 1708652 1708859 -149074694 - MER20 DNA MER1_type 0 219 2 232 175 18 53 chr11 1708983 1709040 -149074513 + MLT1K LTR MaLR 155 209 -379 188 327 0 0 chr11 1710363 1710415 -149073138 - L2 LINE L2 0 3313 3262 502 320 85 29 chr11 1710695 1711011 -149072542 - L2 LINE L2 -559 2755 2422 255 277 108 40 chr11 1712840 1712988 -149070565 - MIR SINE MIR -66 196 39 360 0 0 0 chr11 1720661 1720701 -149062852 + (CTCA)n Simple_repeat Simple_repeat 2 41 0 229 356 69 59 chr11 1720703 1721023 -149062530 - L2 LINE L2 -14 3258 2936 288 339 136 0 chr11 1721060 1721237 -149062316 + MIR SINE MIR 62 262 0 2156 167 30 8 chr11 1722283 1722685 -149060868 + L1MD1 LINE L1 5832 6242 0 317 332 52 57 chr11 1722720 1722949 -149060604 + L1MC4a LINE L1 4407 4634 -1512 24 0 0 0 chr11 1722950 1722974 -149060579 + AT_rich Low_complexity Low_complexity 1 24 0 2039 138 7 0 chr11 1722984 1723289 -149060264 + AluSx SINE Alu 1 307 -5 728 265 103 0 chr11 1723683 1723887 -149059666 - MIR SINE MIR -27 235 11 725 371 80 11 chr11 1724597 1725074 -149058479 + L1MC4a LINE L1 4742 5251 -895 621 263 115 7 chr11 1725116 1725386 -149058167 + L1MC4a LINE L1 5326 5624 -2184 259 271 119 25 chr11 1726132 1726250 -149057303 + L1MC4a LINE L1 5738 5866 -1942 234 277 19 69 chr11 1727004 1727163 -149056390 + L1MC4a LINE L1 5879 6029 -1779 243 0 0 0 chr11 1728316 1728343 -149055210 + (T)n Simple_repeat Simple_repeat 1 27 0 210 244 0 0 chr11 1728750 1728791 -149054762 + (CACG)n Simple_repeat Simple_repeat 3 43 0 316 284 52 17 chr11 1730426 1730542 -149053011 + MIR SINE MIR 16 135 -73 328 308 23 30 chr11 1732563 1732696 -149050857 + MIR3 SINE MIR 49 180 -28 183 375 31 10 chr11 1732694 1732790 -149050763 + L2 LINE L2 3167 3264 -8 * 265 342 114 6 chr11 1733411 1733569 -149049984 - MIR SINE MIR -1 261 87 1935 315 77 17 chr11 1733663 1735335 -149048218 + L1ME3A LINE L1 4416 6168 -2 216 356 22 30 chr11 1735919 1736054 -149047499 - MIR3 SINE MIR -72 136 3 272 285 135 89 chr11 1742321 1742693 -149040860 - L1MC/D LINE L1 -746 5400 5209 6528 208 135 53 chr11 1742949 1745018 -149038535 + L1MD3 LINE L1 4975 7486 -509 538 178 16 47 chr11 1745018 1745147 -149038406 + MLT1F1 LTR MaLR 1 125 -442 6528 208 135 53 chr11 1745147 1745672 -149037881 + L1MD3 LINE L1 7486 7966 -29 1357 272 129 29 chr11 1745685 1746649 -149036904 + L1M4 LINE L1 4370 5429 -735 181 227 186 72 chr11 1746852 1746949 -149036604 - MIR SINE MIR -108 154 47 21 0 0 0 chr11 1748054 1748075 -149035478 + AT_rich Low_complexity Low_complexity 1 21 0 274 161 169 97 chr11 1748079 1748203 -149035350 + L1ME4a LINE L1 5961 6093 -28 896 267 91 98 chr11 1749193 1749774 -149033779 + MLT1K LTR MaLR 2 578 -10 240 301 131 31 chr11 1751629 1751858 -149031695 + LTR16C LTR ERVL 42 293 -198 585 316 90 17 chr11 1751953 1752241 -149031312 - L2 LINE L2 -555 2759 2451 8539 184 65 39 chr11 1752594 1754951 -149028602 + L1MA5 LINE L1 1438 3733 -3115 1512 169 48 11 chr11 1754951 1755223 -149028330 - AluJb SINE Alu -30 282 1 8539 184 65 39 chr11 1755223 1756343 -149027210 + L1MA5 LINE L1 3733 5026 -1822 1538 191 38 0 chr11 1756343 1756610 -149026943 + AluJb SINE Alu 5 281 -31 8539 184 65 39 chr11 1756610 1756903 -149026650 + L1MA5 LINE L1 5026 5310 -1538 * 11145 195 53 17 chr11 1756902 1760665 -149022888 + L1MA4A LINE L1 1 4036 -2812 4911 154 72 9 chr11 1760669 1762587 -149020966 + L1MA4A LINE L1 4959 7005 0 1177 202 0 0 chr11 1762596 1762799 -149020754 + AluJo SINE Alu 27 229 -83 40281 54 4 9 chr11 1762800 1768981 -149014572 + L1PA5 LINE L1 2 6149 -5 604 175 0 14 chr11 1769016 1769159 -149014394 + L1MA5 LINE L1 5302 5442 -1406 952 257 13 13 chr11 1769159 1769385 -149014168 - MER8 DNA MER2_type 0 239 14 2972 165 83 6 chr11 1769385 1770471 -149013082 + L1MA5 LINE L1 5449 6602 -400 853 132 25 13 chr11 1770473 1770632 -149012921 + L1MA5 LINE L1 6842 7002 0 1049 193 77 36 chr11 1770656 1770948 -149012605 + L1MB3 LINE L1 4012 4323 -1823 2433 85 0 3 chr11 1770948 1771255 -149012298 - AluY SINE Alu -5 306 1 1049 193 77 36 chr11 1771255 1771325 -149012228 + L1MB3 LINE L1 4323 4389 -1757 311 333 16 32 chr11 1771343 1771469 -149012084 + L1MA9 LINE L1 2154 2277 -5289 2378 267 42 23 chr11 1771471 1772675 -149010878 + L1MA9 LINE L1 2096 3404 -4162 3251 208 23 6 chr11 1772704 1773488 -149010065 + L1MA9 LINE L1 5030 5826 -1739 1339 227 9 9 chr11 1773479 1773823 -149009730 + L1M3 LINE L1 4807 5150 -996 * 4534 166 59 44 chr11 1773823 1775110 -149008443 + L1MA9 LINE L1 5828 7166 -565 1726 179 3 7 chr11 1775110 1775406 -149008147 + AluJo SINE Alu 6 300 -12 4534 166 59 44 chr11 1775406 1775981 -149007572 + L1MA9 LINE L1 7166 7731 0 2624 194 46 101 chr11 1775980 1776329 -149007224 + L1MB3 LINE L1 4392 4759 -1421 * 1555 221 10 0 chr11 1776329 1776623 -149006930 + AluJb SINE Alu 1 297 -15 2624 194 46 101 chr11 1776623 1777288 -149006265 + L1MB3 LINE L1 4759 5328 -852 2278 79 24 0 chr11 1777288 1777578 -149005975 + AluY SINE Alu 1 297 -14 2624 194 46 101 chr11 1777578 1777729 -149005824 + L1MB3 LINE L1 5328 5486 -694 752 224 0 33 chr11 1777743 1777895 -149005658 + AluJb SINE Alu 143 289 -23 3460 168 23 12 chr11 1777903 1778595 -149004958 + L1MB3 LINE L1 5480 6179 -4 1865 180 3 2 chr11 1778615 1779155 -149004398 + L1MC1 LINE L1 5029 5570 -744 587 186 0 17 chr11 1779161 1779279 -149004274 + L1M3 LINE L1 5534 5649 -534 4093 142 13 38 chr11 1779317 1779830 -149003723 + L1MC1 LINE L1 5586 6075 -258 1861 110 190 19 chr11 1779830 1780194 -149003359 - MSTA LTR MaLR -2 426 1 4093 142 13 38 chr11 1780194 1780446 -149003107 + L1MC1 LINE L1 6075 6332 -1 1087 226 51 11 chr11 1780492 1781030 -149002523 + L1MC4a LINE L1 2252 2810 -3572 * 8221 196 68 29 chr11 1781028 1781606 -149001947 + L1MA9 LINE L1 3127 3681 -2867 5157 115 21 53 chr11 1781606 1781879 -149001674 + L1PA16 LINE L1 5151 5431 -735 2215 121 0 3 chr11 1781879 1782233 -149001320 + AluSx SINE Alu 1 312 0 5157 115 21 53 chr11 1782233 1782641 -149000912 + L1PA16 LINE L1 5431 5791 -375 2393 86 3 0 chr11 1782641 1782945 -149000608 + AluSp SINE Alu 1 305 -8 5157 115 21 53 chr11 1782945 1783304 -149000249 + L1PA16 LINE L1 5791 6160 -6 8221 196 68 29 chr11 1783304 1784737 -148998816 + L1MA9 LINE L1 3681 5057 -1491 1225 118 81 5 chr11 1784737 1784948 -148998605 - MER30 DNA MER1_type -3 227 1 8221 196 68 29 chr11 1784948 1786147 -148997406 + L1MA9 LINE L1 5057 6466 -82 26 0 0 0 chr11 1786167 1786193 -148997360 + AT_rich Low_complexity Low_complexity 1 26 0 6844 220 52 46 chr11 1786209 1788735 -148994818 + L1MC4a LINE L1 2811 5351 -1031 336 132 0 0 chr11 1788730 1788783 -148994770 + L1MB5 LINE L1 6084 6136 -38 * 1039 261 126 10 chr11 1789064 1789478 -148994075 + L1MC4a LINE L1 5964 6425 -1619 1784 230 53 93 chr11 1789910 1790740 -148992813 + L1M4 LINE L1 684 1480 -5062 1830 134 124 0 chr11 1790762 1791061 -148992492 - MER1B DNA MER1_type -1 336 1 1107 217 35 67 chr11 1791291 1791645 -148991908 + L1M4 LINE L1 2529 2814 -3830 2065 141 27 0 chr11 1791645 1791944 -148991609 + AluSx SINE Alu 1 307 -5 1107 217 35 67 chr11 1791944 1792159 -148991394 + L1M4 LINE L1 2814 3034 -3610 270 164 0 45 chr11 1792186 1792253 -148991300 - L1M4 LINE L1 -3549 2597 2534 6263 222 40 80 chr11 1792332 1794368 -148989185 + L1MB3 LINE L1 1503 3620 -2627 1222 178 48 96 chr11 1794368 1794682 -148988871 + AluJo SINE Alu 1 299 -3 6263 222 40 80 chr11 1794682 1795447 -148988106 + L1MB3 LINE L1 3620 4415 -1832 2058 165 25 6 chr11 1795447 1795805 -148987748 - MLT1A1 LTR MaLR 0 365 1 6263 222 40 80 chr11 1795805 1795954 -148987599 + L1MB3 LINE L1 4415 4569 -1678 2524 77 0 3 chr11 1795954 1796264 -148987289 + AluY SINE Alu 1 309 -2 6263 222 40 80 chr11 1796264 1796453 -148987100 + L1MB3 LINE L1 4569 4764 -1483 2331 151 57 5 chr11 1796453 1796857 -148986696 - MSTB LTR MaLR 0 426 2 6263 222 40 80 chr11 1796857 1797041 -148986512 + L1MB3 LINE L1 4764 4954 -1293 397 167 52 0 chr11 1797041 1797137 -148986416 + L1MB3 LINE L1 6152 6252 0 6263 222 40 80 chr11 1797137 1798306 -148985247 + L1MB3 LINE L1 4954 5667 -580 2142 101 3 3 chr11 1798315 1798611 -148984942 + AluSg SINE Alu 1 296 -14 1128 172 33 25 chr11 1798624 1798868 -148984685 + L1MB8 LINE L1 5854 6099 -79 689 179 22 8 chr11 1798873 1799007 -148984546 + Tigger1 DNA MER2_type 22 157 -2261 * 1310 105 29 5 chr11 1798996 1799206 -148984347 + Tigger1 DNA MER2_type 2202 2416 -2 503 131 0 0 chr11 1799206 1799290 -148984263 + L1MB8 LINE L1 6095 6178 0 2447 228 37 21 chr11 1799295 1799946 -148983607 + L1MD1 LINE L1 5050 5743 -499 2312 165 65 45 chr11 1799946 1800437 -148983116 - MLT1D LTR MaLR 0 505 5 2447 228 37 21 chr11 1800437 1800937 -148982616 + L1MD1 LINE L1 5743 6234 -8 620 150 55 8 chr11 1800952 1801079 -148982474 + L1M4 LINE L1 5320 5452 -726 1478 285 77 31 chr11 1801214 1801976 -148981577 + L1MC4 LINE L1 7244 8040 -2 875 200 184 0 chr11 1802022 1802207 -148981346 + MER20 DNA MER1_type 1 219 0 2179 162 12 54 chr11 1802356 1802763 -148980790 + MLT1B LTR MaLR 1 390 0 310 321 53 79 chr11 1802769 1803034 -148980519 + L1M4c LINE L1 937 1194 -5190 673 273 41 5 chr11 1803400 1803594 -148979959 - MIR SINE MIR -49 213 13 1536 329 123 38 chr11 1803785 1804676 -148978877 + L1M4c LINE L1 2887 3853 -2529 735 280 76 16 chr11 1804848 1805280 -148978273 - L1MC/D LINE L1 -2039 5769 5312 30 27 0 0 chr11 1805400 1805437 -148978116 + AT_rich Low_complexity Low_complexity 1 37 0 2178 239 28 40 chr11 1805440 1806217 -148977336 - L1ME1 LINE L1 -4 6162 5395 3994 111 12 0 chr11 1806217 1806856 -148976697 - Tigger1 DNA MER2_type -656 1762 1116 357 141 141 13 chr11 1806856 1806934 -148976619 - Tigger1 DNA MER2_type -2330 88 1 616 253 11 0 chr11 1806934 1807120 -148976433 - L1ME1 LINE L1 -1769 4377 4190 1118 310 93 26 chr11 1807123 1808238 -148975315 + L1MEd LINE L1 447 1682 -4628 184 304 87 0 chr11 1809028 1809097 -148974456 + L2 LINE L2 3039 3113 -159 182 204 143 0 chr11 1809347 1809396 -148974157 - L2 LINE L2 -339 2974 2919 287 222 56 0 chr11 1813955 1814027 -148969526 - L2 LINE L2 -307 3006 2931 449 96 0 101 chr11 1817600 1817798 -148965755 + (CA)n Simple_repeat Simple_repeat 2 179 0 282 232 0 0 chr11 1817812 1817976 -148965577 + (CA)n Simple_repeat Simple_repeat 2 165 0 216 234 30 24 chr11 1818066 1818233 -148965320 + (CATA)n Simple_repeat Simple_repeat 2 169 0 231 152 30 15 chr11 1818261 1818327 -148965226 + (CA)n Simple_repeat Simple_repeat 2 68 0 367 221 182 0 chr11 1821769 1821923 -148961630 + Charlie1 DNA MER1_type 2436 2617 -144 27 0 0 0 chr11 1822238 1822265 -148961288 + AT_rich Low_complexity Low_complexity 1 27 0 189 383 11 11 chr11 1824033 1824127 -148959426 + MIR SINE MIR 77 170 -92 274 155 52 0 chr11 1824906 1824964 -148958589 + L2 LINE L2 3006 3066 -206 217 333 0 0 chr11 1825290 1825350 -148958203 - MIR SINE MIR -109 153 94 351 247 137 93 chr11 1826126 1826490 -148957063 + MLT1G1 LTR MaLR 1 380 -10 340 291 10 0 chr11 1828812 1828915 -148954638 - MER45C DNA AcHobo -129 824 721 544 289 0 6 chr11 1828997 1829156 -148954397 - MER45C DNA AcHobo -738 215 58 197 217 66 57 chr11 1830587 1830693 -148952860 - MIR SINE MIR -62 146 40 242 236 79 71 chr11 1832462 1832589 -148950964 + MIR SINE MIR 113 240 -22 2270 101 0 3 chr11 1833122 1833429 -148950124 + AluSg SINE Alu 1 306 -4 279 351 36 0 chr11 1833547 1833658 -148949895 + L2 LINE L2 3199 3313 0 2149 88 0 39 chr11 1833980 1834319 -148949234 - AluSx SINE Alu 0 312 1 206 296 0 0 chr11 1835818 1835872 -148947681 - MIR SINE MIR -114 148 95 2766 214 57 69 chr11 1836806 1837697 -148945856 + L1MB3 LINE L1 5281 6156 -27 2161 101 3 7 chr11 1837697 1837994 -148945559 - AluSx SINE Alu -16 296 1 2766 214 57 69 chr11 1837994 1838022 -148945531 + L1MB3 LINE L1 6156 6183 0 530 227 8 0 chr11 1838051 1838170 -148945383 + L1MB5 LINE L1 6019 6138 -36 205 156 0 0 chr11 1840065 1840097 -148943456 + C-rich Low_complexity Low_complexity 2 33 0 364 295 27 0 chr11 1840690 1840802 -148942751 + MIR SINE MIR 77 191 -71 2401 41 7 3 chr11 1841076 1841371 -148942182 - AluY SINE Alu 0 311 16 254 298 61 35 chr11 1844209 1844407 -148939146 - L1M4 LINE L1 -3240 2906 2704 395 308 35 0 chr11 1844690 1844833 -148938720 + MLT1G1 LTR MaLR 448 595 0 392 352 102 22 chr11 1844892 1845207 -148938346 - L1M4 LINE L1 -3540 2606 2267 866 247 49 45 chr11 1845679 1845902 -148937651 - MER58A DNA MER1_type 0 224 1 1184 192 108 26 chr11 1845938 1846282 -148937271 + MLT1C LTR MaLR 8 379 -88 3429 227 49 115 chr11 1847916 1848290 -148935263 + L1ME1 LINE L1 3398 3795 -2371 2252 94 0 13 chr11 1848290 1848597 -148934956 + AluSq SINE Alu 1 303 -10 3429 227 49 115 chr11 1848597 1848628 -148934925 + L1ME1 LINE L1 3795 3826 -2340 207 0 0 0 chr11 1848628 1848651 -148934902 + (TAAAA)n Simple_repeat Simple_repeat 3 25 0 3429 227 49 115 chr11 1848651 1851195 -148932358 + L1ME1 LINE L1 3826 6161 -5 387 304 144 22 chr11 1854143 1854555 -148928998 + L2 LINE L2 2634 3109 -204 1966 134 0 13 chr11 1854772 1855078 -148928475 + AluSx SINE Alu 1 302 -10 2710 232 83 60 chr11 1855182 1855542 -148928011 + L1ME1 LINE L1 2216 2566 -3649 399 100 11 89 chr11 1855542 1855632 -148927921 + L1MA5 LINE L1 6217 6299 -1 2710 232 83 60 chr11 1855632 1856609 -148926944 + L1ME1 LINE L1 2566 3544 -2671 881 271 83 56 chr11 1856837 1858708 -148924845 + L1ME1 LINE L1 3521 5432 -803 1741 165 7 3 chr11 1858708 1859005 -148924548 + AluJo SINE Alu 1 298 -14 881 271 83 56 chr11 1859005 1859827 -148923726 + L1ME1 LINE L1 5432 6230 -5 302 300 0 11 chr11 1860062 1860152 -148923401 - MIR SINE MIR -78 184 96 220 399 14 14 chr11 1861169 1861312 -148922241 + (CGTG)n Simple_repeat Simple_repeat 3 145 0 199 205 0 0 chr11 1861970 1862009 -148921544 - L2 LINE L2 -528 2786 2748 237 304 22 0 chr11 1864166 1864258 -148919295 + L1MC4 LINE L1 7808 7901 -141 1751 174 9 22 chr11 1864265 1864581 -148918972 + AluJb SINE Alu 1 312 0 594 266 85 0 chr11 1864934 1865133 -148918420 - MER58A DNA MER1_type -8 216 1 * 1029 213 16 56 chr11 1865133 1865532 -148918021 + MLT1C LTR MaLR 18 375 -15 268 226 0 0 chr11 1867421 1867474 -148916079 + L2 LINE L2 3261 3313 0 356 354 17 17 chr11 1868631 1868809 -148914744 + (CACG)n Simple_repeat Simple_repeat 1 178 0 188 326 264 4 chr11 1870221 1870482 -148913071 - L2 LINE L2 -351 2963 2635 365 331 11 22 chr11 1871407 1871588 -148911965 + (CA)n Simple_repeat Simple_repeat 2 180 0 255 347 8 8 chr11 1871638 1871759 -148911794 + (CA)n Simple_repeat Simple_repeat 1 121 0 304 272 76 0 chr11 1872210 1872302 -148911251 + L1MB7 LINE L1 3726 3824 -2322 384 390 47 36 chr11 1872878 1873240 -148910313 + L1MB7 LINE L1 4614 4979 -1167 624 303 127 17 chr11 1874476 1874879 -148908674 + L1MB7 LINE L1 5738 6184 0 627 262 63 9 chr11 1878089 1878310 -148905243 - MLT1D LTR MaLR -265 240 8 180 0 0 0 chr11 1878510 1878530 -148905023 + (A)n Simple_repeat Simple_repeat 1 20 0 2147 90 0 37 chr11 1878782 1879105 -148904448 + AluSx SINE Alu 1 311 -1 786 193 86 6 chr11 1881026 1881232 -148902321 + L1MB3 LINE L1 5974 6183 0 286 253 147 7 chr11 1882334 1882484 -148901069 - MLT1D LTR MaLR -290 215 45 929 201 0 5 chr11 1882618 1882825 -148900728 - AluJo SINE Alu 0 312 121 290 163 0 0 chr11 1885545 1885594 -148897959 - MER58A DNA MER1_type -19 88 40 336 280 56 15 chr11 1885977 1886117 -148897436 - MIR SINE MIR -62 146 39 1207 212 58 18 chr11 1886915 1887245 -148896308 + L1PB4 LINE L1 5814 6156 0 2307 46 18 0 chr11 1887447 1887728 -148895825 - AluY SINE Alu -21 290 5 280 356 40 6 chr11 1889696 1889870 -148893683 - MLT1J LTR MaLR -310 201 22 202 328 31 0 chr11 1891141 1891205 -148892348 - L2 LINE L2 -28 3244 3179 234 271 56 28 chr11 1891314 1891421 -148892132 - L2 LINE L2 -309 3004 2895 1727 160 3 30 chr11 1891662 1891962 -148891591 - AluJo SINE Alu -16 296 5 1817 149 0 44 chr11 1891970 1892291 -148891262 - AluJo SINE Alu -2 310 4 334 335 128 33 chr11 1894360 1894993 -148888560 + L2 LINE L2 2023 2715 -599 295 353 35 0 chr11 1895043 1895304 -148888249 + L1MC4a LINE L1 4963 5232 -914 791 280 42 8 chr11 1895316 1895958 -148887595 + L1MC4a LINE L1 5256 5728 -585 561 237 149 0 chr11 1895975 1896169 -148887384 + L1M4 LINE L1 4895 5117 -1029 539 202 0 28 chr11 1896166 1896312 -148887241 - L1M1 LINE L1 -499 5665 5588 * 1940 262 37 34 chr11 1896295 1897056 -148886497 + L1M4 LINE L1 2140 2905 -3241 1168 130 12 0 chr11 1897056 1897225 -148886328 + L1PA10 LINE L1 5998 6168 0 1940 262 37 34 chr11 1897225 1897338 -148886215 + L1M4 LINE L1 2905 3016 -3130 11537 152 20 11 chr11 1897348 1897506 -148886047 - L1MA3 LINE L1 0 7724 7569 1814 166 7 3 chr11 1897506 1897808 -148885745 - AluSx SINE Alu -9 303 1 11537 152 20 11 chr11 1897808 1898578 -148884975 - L1MA3 LINE L1 -155 7569 6808 2654 26 0 3 chr11 1898578 1898888 -148884665 - L1PA4 LINE L1 0 6155 5847 11537 152 20 11 chr11 1898888 1901277 -148882276 - L1MA3 LINE L1 -916 6808 4371 5926 50 1 1 chr11 1901268 1902071 -148881482 - L1PA7 LINE L1 -22 6132 5330 * 343 71 18 0 chr11 1902067 1902123 -148881430 + L1P LINE L1 4448 4504 -1642 * 2136 174 29 37 chr11 1902121 1903105 -148880448 - L1MA3 LINE L1 -3170 4395 3258 28604 110 14 25 chr11 1903108 1905819 -148877734 + L1PA8 LINE L1 6 2744 -3743 2395 97 0 3 chr11 1905819 1906128 -148877425 - AluY SINE Alu -3 308 1 28604 110 14 25 chr11 1906128 1909930 -148873623 + L1PA8 LINE L1 2744 6480 -7 18143 128 79 12 chr11 1909919 1911276 -148872277 - L1MA3 LINE L1 -4282 3283 2019 * 2248 108 30 0 chr11 1911276 1911397 -148872156 + AluSp SINE Alu 1 117 -196 243 0 0 0 chr11 1911397 1911424 -148872129 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2248 108 30 0 chr11 1911424 1911598 -148871955 + AluSp SINE Alu 117 305 -8 18143 128 79 12 chr11 1911598 1913308 -148870245 - L1MA3 LINE L1 -5546 2019 10 9452 193 39 17 chr11 1913304 1915357 -148868196 + L1MB2 LINE L1 3013 5158 -1013 * 2093 135 133 3 chr11 1915357 1915734 -148867819 + MSTB LTR MaLR 1 426 0 9452 193 39 17 chr11 1915734 1916769 -148866784 + L1MB2 LINE L1 5158 6169 -2 4363 279 58 40 chr11 1916765 1917817 -148865736 + L1MC4a LINE L1 5885 6967 -841 * 2243 122 6 3 chr11 1917817 1918128 -148865425 + AluSx SINE Alu 1 312 0 4363 279 58 40 chr11 1918128 1918984 -148864569 + L1MC4a LINE L1 6967 7807 -1 367 351 4 30 chr11 1919005 1919236 -148864317 + L2 LINE L2 2809 3033 -280 481 331 68 11 chr11 1919666 1919932 -148863621 + L1ME4a LINE L1 5538 5818 -303 225 94 0 0 chr11 1920063 1920095 -148863458 + (CA)n Simple_repeat Simple_repeat 1 32 0 369 259 12 0 chr11 1920156 1920241 -148863312 - MIR SINE MIR -65 197 112 3576 126 2 0 chr11 1920266 1920790 -148862763 - MER1A DNA MER1_type -2 525 1 309 250 188 0 chr11 1920937 1921065 -148862488 + L1ME4a LINE L1 5967 6118 -3 1001 286 74 70 chr11 1921257 1921638 -148861915 - L1MC4 LINE L1 -16 8026 7648 2471 102 5 30 chr11 1921638 1922011 -148861542 + THE1B LTR MaLR 1 364 0 11502 86 5 0 chr11 1922011 1923584 -148859969 + THE1B-int LTR MaLR 1 1580 0 2288 126 5 27 chr11 1923584 1923956 -148859597 + THE1B LTR MaLR 1 364 0 1001 286 74 70 chr11 1923956 1924327 -148859226 - L1MC4 LINE L1 -393 7649 7269 242 269 84 34 chr11 1924390 1924509 -148859044 - L1MC4 LINE L1 -912 7130 7006 733 142 45 52 chr11 1924531 1924665 -148858888 - FLAM_C SINE Alu 0 133 1 1998 150 0 7 chr11 1925293 1925593 -148857960 + AluSx SINE Alu 1 298 -14 331 345 54 25 chr11 1925960 1926163 -148857390 - L1M4 LINE L1 -3299 2847 2639 1936 131 68 37 chr11 1926280 1926632 -148856921 - THE1B LTR MaLR -1 363 1 1095 266 62 11 chr11 1926916 1927288 -148856265 + L1MB7 LINE L1 5776 6166 -18 223 186 314 0 chr11 1927317 1927403 -148856150 + MIR SINE MIR 31 143 -119 446 247 6 0 chr11 1929841 1930019 -148853534 + (CA)n Simple_repeat Simple_repeat 1 179 0 384 283 3 0 chr11 1930034 1930354 -148853199 + (CA)n Simple_repeat Simple_repeat 1 321 0 495 269 0 0 chr11 1930401 1930721 -148852832 + (CA)n Simple_repeat Simple_repeat 1 320 0 799 252 91 7 chr11 1931195 1931481 -148852072 + L1ME1 LINE L1 4885 5194 -952 331 155 0 0 chr11 1931481 1931539 -148852014 + AluJo SINE Alu 40 97 -205 2669 172 61 33 chr11 1931539 1932114 -148851439 + LTR59 LTR ERV1 1 591 -6 1129 174 10 0 chr11 1932114 1932310 -148851243 + AluJo SINE Alu 94 291 -21 2370 56 45 0 chr11 1932322 1932608 -148850945 + AluY SINE Alu 1 299 -12 1290 273 124 52 chr11 1932612 1932711 -148850842 + L1ME1 LINE L1 5186 5276 -890 2147 111 3 19 chr11 1932711 1933018 -148850535 + AluSg SINE Alu 1 302 -8 1290 273 124 52 chr11 1933018 1933831 -148849722 + L1ME1 LINE L1 5276 6161 -5 2030 131 0 3 chr11 1933852 1934135 -148849418 + AluJo SINE Alu 18 299 -13 230 258 65 0 chr11 1934221 1934283 -148849270 - MIR SINE MIR -86 176 111 258 284 27 0 chr11 1935440 1935514 -148848039 - MIR SINE MIR -91 171 96 281 239 15 0 chr11 1936013 1936080 -148847473 + MIR3 SINE MIR 90 157 -51 224 246 35 0 chr11 1936717 1936774 -148846779 + MIR SINE MIR 64 122 -86 641 148 9 0 chr11 1937020 1937128 -148846425 + FRAM SINE Alu 62 170 -6 32 67 0 0 chr11 1937903 1937963 -148845590 + AT_rich Low_complexity Low_complexity 1 60 0 186 43 0 0 chr11 1938661 1938684 -148844869 + (CCCCAG)n Simple_repeat Simple_repeat 6 28 0 379 335 12 12 chr11 1940384 1940554 -148842999 + (TCCA)n Simple_repeat Simple_repeat 2 171 0 258 32 0 0 chr11 1941767 1941798 -148841755 + (GGGA)n Simple_repeat Simple_repeat 4 34 0 809 291 83 79 chr11 1943359 1943587 -148839966 - L1MC5 LINE L1 -397 7564 7339 483 33 0 0 chr11 1943587 1943648 -148839905 + (TCCA)n Simple_repeat Simple_repeat 1 61 0 809 291 83 79 chr11 1943648 1944411 -148839142 - L1MC5 LINE L1 -622 7339 6555 5173 176 42 64 chr11 1944488 1945316 -148838237 - L1PA16 LINE L1 -5 6161 5316 2545 49 0 55 chr11 1945316 1945642 -148837911 - AluY SINE Alu -3 308 1 5173 176 42 64 chr11 1945642 1945956 -148837597 - L1PA16 LINE L1 -850 5316 4997 412 158 0 0 chr11 1945956 1946032 -148837521 - AluSg/q SINE Alu -2 311 236 1474 125 0 0 chr11 1946032 1946224 -148837329 - AluSg SINE Alu -118 192 1 5173 176 42 64 chr11 1946224 1946885 -148836668 - L1PA16 LINE L1 -1168 4998 4327 2451 71 3 3 chr11 1946885 1947181 -148836372 + AluY SINE Alu 1 296 -15 5173 176 42 64 chr11 1947181 1947650 -148835903 - L1PA16 LINE L1 -1839 4327 3849 353 320 112 44 chr11 1947825 1948209 -148835344 - L1MC4a LINE L1 -1541 6267 5858 677 209 0 0 chr11 1948213 1948347 -148835206 + FLAM_C SINE Alu 2 135 -8 584 295 153 3 chr11 1948347 1948635 -148834918 - L1MC4a LINE L1 -1946 5862 5532 2456 81 3 0 chr11 1948893 1949190 -148834363 - AluSp SINE Alu -15 298 1 1850 149 30 7 chr11 1950845 1951141 -148832412 + MER1B DNA MER1_type 37 339 0 33 94 0 0 chr11 1956962 1957058 -148826495 + GC_rich Low_complexity Low_complexity 1 96 0 34 55 0 0 chr11 1957281 1957336 -148826217 + GC_rich Low_complexity Low_complexity 1 55 0 218 260 16 31 chr11 1957375 1957502 -148826051 + (CCCCG)n Simple_repeat Simple_repeat 5 129 0 327 85 0 0 chr11 1957519 1957566 -148825987 + (CCCCCG)n Simple_repeat Simple_repeat 4 50 0 284 333 23 11 chr11 1957601 1957775 -148825778 + (CCCCG)n Simple_repeat Simple_repeat 2 177 0 589 327 121 32 chr11 1958973 1959319 -148824234 + L1MC5 LINE L1 4877 5253 -893 826 261 46 25 chr11 1959320 1959604 -148823949 + L1MC5 LINE L1 5255 5544 -2264 487 289 58 0 chr11 1959608 1959816 -148823737 + L1MC5 LINE L1 5585 5804 -2004 405 0 0 0 chr11 1959861 1959906 -148823647 + (TG)n Simple_repeat Simple_repeat 2 46 0 265 232 66 60 chr11 1960095 1960246 -148823307 + L1MC5 LINE L1 6877 7028 -933 2157 109 3 0 chr11 1960294 1960587 -148822966 + AluSq SINE Alu 1 294 -19 184 232 36 0 chr11 1960602 1960658 -148822895 + L3 LINE CR1 588 645 -932 198 71 0 0 chr11 1961507 1961535 -148822018 + (TTCA)n Simple_repeat Simple_repeat 2 29 0 214 274 32 0 chr11 1961538 1961600 -148821953 - L2 LINE L2 -14 3258 3195 5638 120 15 3 chr11 1961953 1963607 -148819946 - L1PA16 LINE L1 -16 6150 4477 1897 157 0 7 chr11 1963607 1963900 -148819653 - AluJb SINE Alu -21 291 1 5638 120 15 3 chr11 1963900 1963975 -148819578 - L1PA16 LINE L1 -1689 4477 4404 1773 185 15 10 chr11 1963978 1964373 -148819180 - L1 LINE L1 -2041 4105 3709 882 206 0 0 chr11 1966477 1966793 -148816760 + (TGGA)n Simple_repeat Simple_repeat 1 316 0 223 220 0 37 chr11 1966820 1966929 -148816624 + (TGGG)n Simple_repeat Simple_repeat 2 106 0 271 182 55 0 chr11 1967123 1967178 -148816375 + L2 LINE L2 3200 3257 -15 762 176 7 22 chr11 1967183 1967319 -148816234 + AluJo SINE Alu 1 134 -178 202 56 19 93 chr11 1967539 1967593 -148815960 + (CA)n Simple_repeat Simple_repeat 1 50 0 323 194 0 58 chr11 1967648 1967839 -148815714 + (CA)n Simple_repeat Simple_repeat 1 180 0 199 187 0 27 chr11 1967872 1967947 -148815606 + (CA)n Simple_repeat Simple_repeat 2 74 0 370 212 6 71 chr11 1968011 1968542 -148815011 + (CA)n Simple_repeat Simple_repeat 1 496 0 438 350 147 3 chr11 1970307 1970647 -148812906 - L2 LINE L2 0 3313 2925 906 164 0 4 chr11 1971331 1971832 -148811721 + (CCA)n Simple_repeat Simple_repeat 2 676 0 744 127 19 45 chr11 1971843 1972005 -148811548 - THE1C LTR MaLR -22 435 195 237 311 27 54 chr11 1972039 1972187 -148811366 - L2 LINE L2 -460 2854 2711 946 130 120 29 chr11 1972311 1972519 -148811034 - THE1C LTR MaLR -148 227 1 375 169 0 56 chr11 1972530 1972672 -148810881 + (CACCAT)n Simple_repeat Simple_repeat 1 134 0 498 192 6 34 chr11 1972699 1973037 -148810516 + (CACCAT)n Simple_repeat Simple_repeat 1 328 0 757 180 6 6 chr11 1973083 1973261 -148810292 + (CCA)n Simple_repeat Simple_repeat 3 180 0 300 296 12 0 chr11 1973262 1973343 -148810210 + (CACCAT)n Simple_repeat Simple_repeat 5 86 0 605 216 0 6 chr11 1973343 1973524 -148810029 + (CCA)n Simple_repeat Simple_repeat 1 180 0 278 244 0 26 chr11 1973541 1973656 -148809897 + (CACCAT)n Simple_repeat Simple_repeat 2 113 0 537 230 0 0 chr11 1973692 1973844 -148809709 + (CCA)n Simple_repeat Simple_repeat 2 153 0 209 307 183 7 chr11 1974066 1974219 -148809334 - MIR SINE MIR -70 192 13 294 303 67 0 chr11 1975523 1975642 -148807911 - MIR SINE MIR -59 149 23 657 271 140 17 chr11 1976759 1977117 -148806436 + MLT1C LTR MaLR 59 460 -7 799 216 104 78 chr11 1977489 1977873 -148805680 - MLT1C LTR MaLR -39 428 35 213 281 56 0 chr11 1979636 1979725 -148803828 - MIR3 SINE MIR -53 155 62 182 228 101 51 chr11 1980866 1980945 -148802608 + MIR SINE MIR 52 134 -74 2003 114 0 48 chr11 1982642 1982957 -148800596 - AluSx SINE Alu -12 300 1 2238 87 0 13 chr11 1984798 1985107 -148798446 - AluY SINE Alu 0 311 7 922 253 139 21 chr11 1985111 1985443 -148798110 - L1MB7 LINE L1 -66 6118 5748 25 31 0 0 chr11 1987576 1987608 -148795945 + GC_rich Low_complexity Low_complexity 1 32 0 957 177 6 0 chr11 1990221 1990385 -148793168 + AluJb SINE Alu 140 304 -8 205 241 24 48 chr11 1990404 1990487 -148793066 + MIR SINE MIR 42 122 -86 180 219 49 0 chr11 1991943 1991984 -148791569 + L2 LINE L2 3269 3311 -2 234 237 17 0 chr11 1994191 1994250 -148789303 + MER81 DNA DNA 53 112 -2 277 250 75 67 chr11 2000879 2000999 -148782554 - MIR SINE MIR -65 143 23 3844 147 165 23 chr11 2003676 2003850 -148779703 + MER4D LTR ERV1 3 151 -752 1666 140 57 18 chr11 2003850 2004129 -148779424 + AluSq SINE Alu 6 295 -18 3844 147 165 23 chr11 2004129 2004743 -148778810 + MER4D LTR ERV1 151 903 0 210 125 16 31 chr11 2011152 2011216 -148772337 + CT-rich Low_complexity Low_complexity 3 65 0 537 256 62 17 chr11 2012122 2012298 -148771255 - MER53 DNA DNA 0 189 6 181 264 38 0 chr11 2012920 2012973 -148770580 + L2 LINE L2 3189 3243 -29 1092 132 0 0 chr11 2014072 2014231 -148769322 + FRAM SINE Alu 1 159 -17 303 316 26 8 chr11 2014976 2015093 -148768460 + MIR SINE MIR 46 164 -98 1266 269 43 38 chr11 2015979 2016579 -148766974 + L1ME2 LINE L1 5254 5853 -311 509 213 19 0 chr11 2016983 2017091 -148766462 + L1MA10 LINE L1 6223 6332 -2 295 168 15 128 chr11 2017739 2017935 -148765618 + (CACCC)n Simple_repeat Simple_repeat 3 176 0 185 333 14 0 chr11 2021497 2021566 -148761987 - MIR SINE MIR -109 153 84 243 213 0 0 chr11 2021818 2021893 -148761660 + (TG)n Simple_repeat Simple_repeat 1 75 0 283 261 7 25 chr11 2022800 2023079 -148760474 + C-rich Low_complexity Low_complexity 1 273 0 233 174 26 70 chr11 2024733 2024848 -148758705 + (CGGG)n Simple_repeat Simple_repeat 3 112 0 22 70 0 0 chr11 2024868 2024911 -148758642 + GC_rich Low_complexity Low_complexity 1 43 0 204 183 50 0 chr11 2025018 2025078 -148758475 + C-rich Low_complexity Low_complexity 2 64 0 198 152 136 91 chr11 2025336 2025402 -148758151 - L2 LINE L2 -177 3095 3027 662 286 130 0 chr11 2026001 2026186 -148757367 + MER3 DNA MER1_type 1 209 0 417 280 57 96 chr11 2026653 2026985 -148756568 - L2 LINE L2 -1 3271 2953 576 219 41 0 chr11 2027995 2028141 -148755412 - MER89 LTR ERV1 -1 558 407 5689 203 27 33 chr11 2028164 2028544 -148755009 + L1MB7 LINE L1 3830 4211 -1973 1936 178 36 22 chr11 2028544 2028904 -148754649 + MLT1A1 LTR MaLR 1 365 0 5689 203 27 33 chr11 2028904 2029537 -148754016 + L1MB7 LINE L1 4211 4846 -1338 872 80 0 0 chr11 2029537 2029649 -148753904 - HY1 scRNA scRNA 0 112 1 5689 203 27 33 chr11 2029649 2029848 -148753705 + L1MB7 LINE L1 4846 5045 -1139 2353 103 0 0 chr11 2029848 2030160 -148753393 + AluSx SINE Alu 1 312 0 5689 203 27 33 chr11 2030160 2030774 -148752779 + L1MB7 LINE L1 5045 5661 -523 414 0 0 0 chr11 2030774 2030820 -148752733 + (TG)n Simple_repeat Simple_repeat 2 47 0 5689 203 27 33 chr11 2030820 2030886 -148752667 + L1MB7 LINE L1 5661 5726 -458 1987 130 0 3 chr11 2030886 2031199 -148752354 - AluSx SINE Alu 0 312 1 5689 203 27 33 chr11 2031199 2031663 -148751890 + L1MB7 LINE L1 5726 6173 -11 2250 87 0 3 chr11 2031678 2031978 -148751575 + AluY SINE Alu 1 299 -12 342 271 92 28 chr11 2032005 2032223 -148751330 - MER89 LTR ERV1 -146 413 182 245 279 0 0 chr11 2032231 2032292 -148751261 - MER89 LTR ERV1 -497 62 2 246 308 132 0 chr11 2032749 2032931 -148750622 - L2 LINE L2 -553 2761 2556 330 270 78 26 chr11 2036062 2036177 -148747376 + L2 LINE L2 3191 3311 -2 764 262 161 0 chr11 2036745 2036993 -148746560 + MSTD LTR MaLR 108 395 -1 609 209 54 106 chr11 2036998 2037036 -148746517 + MER39 LTR ERV1 412 450 -115 2552 124 72 10 chr11 2037036 2037439 -148746114 + MSTA LTR MaLR 1 428 0 609 209 54 106 chr11 2037439 2037541 -148746012 + MER39 LTR ERV1 450 412 -153 2002 110 4 4 chr11 2037541 2037822 -148745731 - AluSx SINE Alu -2 310 30 609 209 54 106 chr11 2037822 2037964 -148745589 + MER39 LTR ERV1 411 559 -6 1304 221 67 38 chr11 2038576 2038996 -148744557 + MLT1C LTR MaLR 36 467 0 534 295 68 31 chr11 2039369 2039694 -148743859 - LTR16A LTR ERVL -27 423 87 1014 126 0 0 chr11 2039782 2039851 -148743702 + (CAGA)n Simple_repeat Simple_repeat 1 236 0 1014 126 0 0 chr11 2039851 2040018 -148743535 + (CAGA)n Simple_repeat Simple_repeat 2 168 0 447 52 0 0 chr11 2040137 2040195 -148743358 + (TGGA)n Simple_repeat Simple_repeat 3 60 0 2340 160 59 30 chr11 2040197 2040691 -148742862 - MLT2B3 LTR ERVL -46 508 1 23866 202 44 31 chr11 2040691 2041268 -148742285 - ERVL-B3 LTR ERVL -7 5757 5189 2478 58 0 3 chr11 2041268 2041579 -148741974 - AluY SINE Alu -1 310 1 23866 202 44 31 chr11 2041579 2043435 -148740118 - ERVL-B3 LTR ERVL -575 5189 3358 2061 111 3 0 chr11 2043435 2043724 -148739829 - AluSx SINE Alu 0 312 23 23866 202 44 31 chr11 2043724 2045679 -148737874 - ERVL-B3 LTR ERVL -2406 3358 1278 3638 133 9 6 chr11 2045679 2046204 -148737349 - MER1A DNA MER1_type 0 527 1 23866 202 44 31 chr11 2046204 2047497 -148736056 - ERVL-B3 LTR ERVL -4486 1278 3 225 163 0 0 chr11 2047502 2047545 -148736008 - ERVL-B3 LTR ERVL -7 513 471 2308 86 0 3 chr11 2047551 2047853 -148735700 + AluSc SINE Alu 1 301 -8 1583 186 32 74 chr11 2047880 2048283 -148735270 - MLT2B3 LTR ERVL -39 515 130 584 204 8 54 chr11 2048283 2048312 -148735241 + MLT1A1 LTR MaLR 1 30 -335 1894 114 48 14 chr11 2048312 2048602 -148734951 - AluSx SINE Alu -12 300 1 584 204 8 54 chr11 2048602 2048763 -148734790 + MLT1A1 LTR MaLR 30 182 -183 482 249 29 23 chr11 2048804 2048977 -148734576 + MLT1A1 LTR MaLR 192 365 0 5513 236 63 44 chr11 2048996 2049193 -148734360 + MSTC-int LTR MaLR 20 212 -1523 2417 57 0 0 chr11 2049193 2049489 -148734064 + AluY SINE Alu 1 296 -15 5513 236 63 44 chr11 2049489 2050975 -148732578 + MSTC-int LTR MaLR 212 1735 0 986 211 133 58 chr11 2050975 2051373 -148732180 + MSTC LTR MaLR 1 428 0 326 137 0 0 chr11 2051373 2051424 -148732129 - MLT2B3 LTR ERVL -424 130 80 2170 153 112 5 chr11 2051424 2051809 -148731744 - MSTB LTR MaLR 0 426 1 10023 169 10 9 chr11 2051809 2053458 -148730095 - MSTB-int LTR MaLR 0 1651 1 1635 168 47 0 chr11 2053499 2053796 -148729757 + AluSx SINE Alu 1 311 -1 968 190 36 0 chr11 2053601 2053797 -148729756 + AluSg/x SINE Alu 110 367 0 323 73 18 18 chr11 2053797 2053852 -148729701 + (GAAAA)n Simple_repeat Simple_repeat 3 180 0 1314 132 83 61 chr11 2053852 2054228 -148729325 - MSTB LTR MaLR -27 401 1 548 92 0 0 chr11 2054228 2054312 -148729241 - MLT2B3 LTR ERVL -470 84 1 2453 161 14 45 chr11 2054313 2054828 -148728725 + MLT2B3 LTR ERVL 55 553 -1 275 367 44 39 chr11 2054883 2055452 -148728101 - HERVL LTR ERVL -342 5312 4741 459 383 27 6 chr11 2055861 2056198 -148727355 - HERVL LTR ERVL -1385 4269 3926 618 217 22 7 chr11 2056403 2056541 -148727012 - MLT2B1 LTR ERVL -50 470 331 2138 141 39 0 chr11 2056590 2056974 -148726579 + MSTB1 LTR MaLR 34 432 0 1026 213 17 0 chr11 2056974 2057202 -148726351 - MLT2B1 LTR ERVL -288 232 1 1775 292 86 15 chr11 2057241 2057841 -148725712 - HERVL LTR ERVL -2639 2357 1696 2297 156 34 3 chr11 2057841 2058219 -148725334 - MLT1B LTR MaLR 0 390 1 1775 292 86 15 chr11 2058219 2058340 -148725213 - HERVL LTR ERVL -3300 1696 1585 953 152 25 15 chr11 2058397 2058592 -148724961 - THE1C LTR MaLR 0 375 178 854 106 194 12 chr11 2058593 2058763 -148724790 + MSTA LTR MaLR 228 428 0 1123 158 0 0 chr11 2058764 2058929 -148724624 + FRAM SINE Alu 2 166 0 1275 181 39 11 chr11 2058931 2059213 -148724340 + MLT1B LTR MaLR 98 387 -3 593 185 86 0 chr11 2059561 2059712 -148723841 + MLT2B2 LTR ERVL 1 164 -351 2823 94 163 16 chr11 2059713 2060265 -148723288 - LTR10E LTR ERV1 0 633 1 2816 247 9 9 chr11 2060421 2061180 -148722373 - LTR10E-int LTR ERV1 -738 5911 3345 4449 128 33 27 chr11 2061242 2062062 -148721491 - LTR10E-int LTR ERV1 -3912 2984 2160 277 244 39 13 chr11 2062066 2062144 -148721409 + LTR8 LTR ERV1 156 235 -456 981 35 0 7 chr11 2062144 2062287 -148721266 - Harlequin LTR ERV1 -5168 1728 1587 4141 51 7 28 chr11 2062288 2062515 -148721038 - LTR10C LTR ERV1 0 591 361 3514 57 2 13 chr11 2062515 2062968 -148720585 - LTR7 LTR ERV1 -2 448 1 4141 51 7 28 chr11 2062968 2063086 -148720467 - LTR10C LTR ERV1 -230 361 242 1368 199 102 60 chr11 2063086 2063518 -148720035 + LTR7 LTR ERV1 1 450 0 4141 51 7 28 chr11 2063518 2063775 -148719778 - LTR10C LTR ERV1 -349 242 1 3378 172 46 54 chr11 2063775 2064684 -148718869 - LTR10E-int LTR ERV1 -3397 4388 953 723 260 0 6 chr11 2064665 2064846 -148718707 - LTR10E-int LTR ERV1 -4468 3317 3138 * 1219 165 93 8 chr11 2064837 2065277 -148718276 - LTR10E-int LTR ERV1 -3955 2694 840 999 234 55 64 chr11 2065495 2066028 -148717525 - LTR10E-int LTR ERV1 -6335 314 3 2310 107 153 20 chr11 2066046 2066504 -148717049 - LTR10E LTR ERV1 -43 590 72 511 73 0 12 chr11 2067165 2067247 -148716306 - LTR10E LTR ERV1 -549 84 4 924 292 111 37 chr11 2067260 2067692 -148715861 + L1M4 LINE L1 4408 4871 -1275 2074 112 3 0 chr11 2067693 2068002 -148715551 + AluSg SINE Alu 1 310 0 6346 62 16 73 chr11 2068796 2070504 -148713049 - SVA Other Other -683 1386 57 387 41 0 0 chr11 2070504 2070553 -148713000 + (GGGAGA)n Simple_repeat Simple_repeat 1 49 0 993 229 121 36 chr11 2070574 2070625 -148712928 + MLT2B1 LTR ERVL 160 205 -315 2092 161 83 14 chr11 2070625 2071046 -148712507 + LTR7 LTR ERV1 1 450 0 993 229 121 36 chr11 2071046 2071326 -148712227 + MLT2B1 LTR ERVL 205 519 -1 224 311 0 0 chr11 2071718 2071792 -148711761 + L2 LINE L2 1000 1073 -2241 1812 137 0 0 chr11 2071810 2072072 -148711481 - AluSx SINE Alu -10 302 41 246 217 0 0 chr11 2072076 2072122 -148711431 + MSTD LTR MaLR 224 269 -127 289 136 0 0 chr11 2072130 2072174 -148711379 - AluSx SINE Alu -258 44 1 665 224 61 0 chr11 2072185 2072332 -148711221 - MER5A DNA MER1_type -26 163 8 470 208 42 76 chr11 2072478 2072622 -148710931 - MLT1J2 LTR MaLR -292 158 20 240 234 16 31 chr11 2073011 2073075 -148710478 - MLT1I LTR MaLR 0 409 347 1294 200 134 45 chr11 2073567 2073902 -148709651 + MLT1A1 LTR MaLR 1 365 0 3851 246 77 44 chr11 2073902 2074476 -148709077 + MLT1A1-int LTR MaLR 1 554 -1097 1579 57 0 0 chr11 2074476 2074670 -148708883 + L1PA4 LINE L1 5962 6155 0 3851 246 77 44 chr11 2074670 2075491 -148708062 + MLT1A1-int LTR MaLR 554 1446 -205 7050 180 66 19 chr11 2075491 2075892 -148707661 - ERVL LTR ERVL -2012 3752 3371 2157 132 50 19 chr11 2075892 2076256 -148707297 + THE1C LTR MaLR 1 375 0 7050 180 66 19 chr11 2076256 2077351 -148706202 - ERVL LTR ERVL -2393 3371 2185 2596 165 66 23 chr11 2077351 2077474 -148706079 + Tigger3b DNA MER2_type 1 117 -2911 2944 88 0 3 chr11 2077474 2077850 -148705703 - THE1C LTR MaLR 0 375 1 2596 165 66 23 chr11 2077850 2078290 -148705263 + Tigger3b DNA MER2_type 117 588 -643 7763 116 10 9 chr11 2078296 2080463 -148703090 - L1PA11 LINE L1 -21 6153 3979 767 100 0 27 chr11 2080463 2080573 -148702980 - U6 snRNA snRNA 0 107 1 201 40 0 100 chr11 2082616 2082666 -148700887 + (TTTA)n Simple_repeat Simple_repeat 1 45 0 315 0 0 0 chr11 2082669 2082689 -148700864 + (CA)n Simple_repeat Simple_repeat 1 55 0 315 0 0 0 chr11 2082689 2082724 -148700829 + (CA)n Simple_repeat Simple_repeat 2 36 0 1159 128 0 0 chr11 2082743 2082907 -148700646 - AluSg/x SINE Alu -15 297 134 2065 111 0 20 chr11 2082907 2083236 -148700317 - AluSq SINE Alu 0 313 1 1732 142 4 25 chr11 2083238 2083519 -148700034 - AluJo SINE Alu -16 296 22 2067 157 23 0 chr11 2083847 2084190 -148699363 + L1MB3 LINE L1 5826 6176 -7 833 270 34 0 chr11 2084242 2084505 -148699048 + MLT1E2 LTR MaLR 355 626 0 211 273 0 0 chr11 2087079 2087134 -148696419 + G-rich Low_complexity Low_complexity 5 59 0 902 114 0 50 chr11 2088113 2088253 -148695300 - FLAM_C SINE Alu 0 133 1 318 265 128 0 chr11 2088253 2088355 -148695198 + MER45A DNA AcHobo 64 178 0 206 269 64 13 chr11 2089308 2089386 -148694167 + L2 LINE L2 2981 3062 -210 307 128 58 0 chr11 2090202 2090288 -148693265 + (CCCTG)n Simple_repeat Simple_repeat 4 94 0 323 179 0 0 chr11 2091597 2091653 -148691900 - MIR SINE MIR -63 145 90 549 164 0 53 chr11 2095217 2095406 -148688147 + CT-rich Low_complexity Low_complexity 1 179 0 466 209 11 33 chr11 2095388 2095570 -148687983 + C-rich Low_complexity Low_complexity 1 178 0 * 288 77 0 0 chr11 2095707 2095746 -148687807 + (TC)n Simple_repeat Simple_repeat 1 39 0 423 165 0 0 chr11 2096219 2096304 -148687249 + (CA)n Simple_repeat Simple_repeat 2 86 0 240 111 0 0 chr11 2100148 2100184 -148683369 + (TCCCC)n Simple_repeat Simple_repeat 2 37 0 220 324 23 17 chr11 2101924 2102100 -148681453 + (CCCCG)n Simple_repeat Simple_repeat 2 178 0 * 488 231 29 0 chr11 2101992 2102216 -148681337 + (CACCC)n Simple_repeat Simple_repeat 1 230 0 206 222 99 0 chr11 2102407 2102488 -148681065 + (CATG)n Simple_repeat Simple_repeat 4 92 0 1414 204 33 84 chr11 2104165 2104558 -148678995 + MLT1A2 LTR MaLR 2 374 0 228 67 0 0 chr11 2104566 2104596 -148678957 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 2710 262 58 8 chr11 2105646 2106372 -148677181 + ERVL LTR ERVL 1823 2584 -3180 1959 169 66 3 chr11 2106382 2106761 -148676792 - L1MC2 LINE L1 -14 6330 5928 1977 248 71 8 chr11 2106816 2107308 -148676245 + ERVL LTR ERVL 3066 3588 -2176 1470 254 32 28 chr11 2107292 2107729 -148675824 + ERVL LTR ERVL 3795 4233 -1531 * 2449 298 70 18 chr11 2107940 2108942 -148674611 + ERVL LTR ERVL 4516 5569 -195 2275 95 20 0 chr11 2108942 2109248 -148674305 + AluSx SINE Alu 1 312 0 21 0 0 0 chr11 2109315 2109336 -148674217 + AT_rich Low_complexity Low_complexity 1 21 0 275 302 32 8 chr11 2109365 2109491 -148674062 + ERVL LTR ERVL 5590 5718 -46 481 188 52 155 chr11 2109513 2109726 -148673827 + L1MB7 LINE L1 5913 6103 -75 599 155 10 0 chr11 2110780 2110883 -148672670 + L1MB7 LINE L1 6070 6173 -11 1629 181 22 16 chr11 2111838 2112158 -148671395 - L1MB3 LINE L1 0 6183 5862 226 291 58 0 chr11 2112227 2112313 -148671240 + L2 LINE L2 2615 2705 -609 2340 68 0 0 chr11 2112454 2112747 -148670806 + AluY SINE Alu 1 293 -18 258 288 7 14 chr11 2112767 2112913 -148670640 + (TG)n Simple_repeat Simple_repeat 1 145 0 401 252 49 0 chr11 2113361 2113484 -148670069 - L1MC4 LINE L1 0 8042 7914 739 341 41 0 chr11 2113516 2113885 -148669668 - L1MEc LINE L1 -5454 942 559 399 264 41 8 chr11 2113928 2114049 -148669504 - L1MEc LINE L1 -5915 481 357 504 209 17 0 chr11 2114051 2114223 -148669330 + CT-rich Low_complexity Low_complexity 2 176 0 268 298 26 0 chr11 2114256 2114370 -148669183 - L1MEc LINE L1 -6012 384 268 747 233 142 0 chr11 2114570 2114810 -148668743 - L1MC4a LINE L1 -500 7308 7035 8298 58 2 5 chr11 2114914 2115923 -148667630 + LTR13 LTR ERVK 2 1007 0 1476 184 32 0 chr11 2116142 2116420 -148667133 + AluJo SINE Alu 1 287 -25 287 347 150 16 chr11 2116677 2117063 -148666490 + HAL1 LINE L1 1227 1664 -843 239 327 36 42 chr11 2117103 2117268 -148666285 - L1M4 LINE L1 -1452 4694 4531 333 350 38 25 chr11 2117368 2117528 -148666025 + L1 LINE L1 4685 4846 -1300 817 194 0 48 chr11 2117539 2117704 -148665849 + AluJo SINE Alu 126 282 -30 274 107 53 13 chr11 2117720 2117795 -148665758 + (TA)n Simple_repeat Simple_repeat 2 79 0 6439 249 80 12 chr11 2117967 2120176 -148663377 - L1MEc LINE L1 -1493 4722 2364 629 219 29 7 chr11 2120190 2120327 -148663226 - MLT1F1 LTR MaLR -9 558 419 1101 161 8 42 chr11 2120328 2120564 -148662989 + MER96B DNA MER1_type? 190 417 0 3105 243 45 52 chr11 2120614 2121519 -148662034 - L1MEc LINE L1 -4002 2394 1485 2810 155 73 2 chr11 2121519 2122023 -148661530 - L1MB3 LINE L1 -1 6182 5643 3105 243 45 52 chr11 2122023 2122079 -148661474 - L1MEc LINE L1 -4911 1485 1430 207 100 0 0 chr11 2122079 2122109 -148661444 + (TTTTA)n Simple_repeat Simple_repeat 1 30 0 3105 243 45 52 chr11 2122109 2122145 -148661408 - L1MEc LINE L1 -4966 1430 1395 1993 125 3 0 chr11 2122145 2122433 -148661120 + AluSp SINE Alu 22 310 -3 3105 243 45 52 chr11 2122433 2122806 -148660747 - L1MEc LINE L1 -5001 1395 1031 2319 277 67 26 chr11 2123057 2123981 -148659572 - L1MEc LINE L1 -5413 983 22 189 248 99 30 chr11 2124383 2124484 -148659069 - MIR3 SINE MIR -18 190 83 251 301 29 19 chr11 2124679 2124782 -148658771 + MIR SINE MIR 43 146 -62 2064 197 84 12 chr11 2124801 2125313 -148658240 - MER74A LTR ERVL -2 556 8 905 202 37 24 chr11 2125348 2125618 -148657935 + MER33 DNA MER1_type 2 325 -38 182 163 70 0 chr11 2126207 2126250 -148657303 - L2 LINE L2 -211 3061 3016 483 241 0 19 chr11 2126657 2126765 -148656788 + MER58B DNA MER1_type 6 111 -230 1307 162 5 0 chr11 2126806 2127028 -148656525 + AluSg/x SINE Alu 85 307 -5 3430 209 20 7 chr11 2127030 2127727 -148655826 + L1MB3 LINE L1 5476 6181 -2 453 262 152 5 chr11 2127732 2127923 -148655630 + MER58B DNA MER1_type 123 341 0 1411 232 135 18 chr11 2128029 2128465 -148655088 - L1MB7 LINE L1 -9 6970 6484 242 241 89 13 chr11 2129070 2129149 -148654404 + MLT1H1 LTR MaLR 466 550 -5 207 325 0 0 chr11 2131093 2131176 -148652377 + G-rich Low_complexity Low_complexity 6 88 0 21 0 0 0 chr11 2132488 2132509 -148651044 + GC_rich Low_complexity Low_complexity 1 21 0 27 49 0 0 chr11 2132603 2132644 -148650909 + GC_rich Low_complexity Low_complexity 1 41 0 281 338 157 12 chr11 2134952 2135372 -148648181 - L1MC5 LINE L1 -130 7831 7351 592 309 98 21 chr11 2135455 2135740 -148647813 + LTR16B LTR ERVL 144 450 -14 1230 101 62 0 chr11 2135968 2136147 -148647406 - MER107 DNA MER1_type 0 197 8 2740 231 66 71 chr11 2136452 2137287 -148646266 - MER45B DNA AcHobo -624 957 126 834 139 8 0 chr11 2137287 2137416 -148646137 + FLAM_C SINE Alu 1 130 -3 2740 231 66 71 chr11 2137416 2137518 -148646035 - MER45B DNA AcHobo -1455 126 25 1144 180 70 22 chr11 2139276 2139556 -148643997 - MLT1B LTR MaLR -4 370 60 250 253 81 20 chr11 2141210 2141309 -148642244 - MIR SINE MIR -114 148 44 334 320 53 53 chr11 2142674 2142918 -148640635 - L1ME3 LINE L1 -32 6130 5887 303 179 0 45 chr11 2143426 2143493 -148640060 + L1PA11 LINE L1 6109 6172 -2 2588 36 0 0 chr11 2143785 2144093 -148639460 - AluY SINE Alu -3 308 1 397 240 6 6 chr11 2144836 2145007 -148638546 + (CA)n Simple_repeat Simple_repeat 2 172 0 242 274 78 0 chr11 2145174 2145276 -148638277 - L1MB7 LINE L1 -774 6365 6256 987 212 31 16 chr11 2145381 2145717 -148637836 - L1MB7 LINE L1 -746 6195 5884 424 196 55 8 chr11 2145724 2145893 -148637660 + MER20 DNA MER1_type 7 219 0 2705 234 66 57 chr11 2145898 2146854 -148636699 - L1MB7 LINE L1 -1070 5871 4902 2361 44 14 14 chr11 2146854 2147151 -148636402 + AluY SINE Alu 3 299 -12 2705 234 66 57 chr11 2147151 2147351 -148636202 - L1MB7 LINE L1 -2039 4902 4705 * 3008 263 50 46 chr11 2147335 2147699 -148635854 - L1MB7 LINE L1 -3644 3297 2936 916 205 0 6 chr11 2147699 2147860 -148635693 - FRAM SINE Alu -6 160 1 3008 263 50 46 chr11 2147860 2148704 -148634849 - L1MB7 LINE L1 -4005 2936 2097 2032 89 64 0 chr11 2148704 2148985 -148634568 + AluSq SINE Alu 1 299 -14 3008 263 50 46 chr11 2148985 2149507 -148634046 - L1MB7 LINE L1 -4844 2097 1579 1671 176 3 22 chr11 2149507 2149820 -148633733 - AluJo SINE Alu -5 307 1 3008 263 50 46 chr11 2149820 2149861 -148633692 - L1MB7 LINE L1 -5362 1579 1540 2200 67 3 3 chr11 2149861 2150187 -148633366 - AluSc SINE Alu 0 326 1 3008 263 50 46 chr11 2150187 2150644 -148632909 - L1MB7 LINE L1 -5401 1540 865 606 290 90 33 chr11 2150915 2151280 -148632273 - L1MCc LINE L1 -6014 409 24 259 232 18 0 chr11 2152304 2152360 -148631193 - LTR16A1 LTR ERVL -2 455 399 425 297 148 5 chr11 2152403 2152605 -148630948 - LTR16A1 LTR ERVL -225 232 2 773 371 59 19 chr11 2153161 2153834 -148629719 - HERVL LTR ERVL -1821 3833 3134 1196 303 27 13 chr11 2153847 2154220 -148629333 - HERVL LTR ERVL -2127 2869 2492 497 302 40 31 chr11 2154244 2154466 -148629087 - HERVL LTR ERVL -3228 2536 2313 2769 233 42 50 chr11 2154468 2154534 -148629019 - L1ME1 LINE L1 -5 6144 6079 2169 112 3 6 chr11 2154534 2154847 -148628706 - AluSx SINE Alu 0 312 1 2769 233 42 50 chr11 2154847 2156606 -148626947 - L1ME1 LINE L1 -70 6079 4327 910 245 121 13 chr11 2156610 2156924 -148626629 - L1ME1 LINE L1 -1887 4242 3895 633 270 23 0 chr11 2156930 2157094 -148626459 + MLT2D LTR ERVL 1 168 -246 950 171 77 13 chr11 2157094 2157425 -148626128 - MSTB1 LTR MaLR 0 457 8 1510 118 41 0 chr11 2157425 2157646 -148625907 + MER30 DNA MER1_type 1 230 0 646 236 99 17 chr11 2157655 2157846 -148625707 + MLT2D LTR ERVL 163 378 -36 312 27 0 0 chr11 2157846 2157883 -148625670 + (CA)n Simple_repeat Simple_repeat 1 37 0 646 236 99 17 chr11 2157883 2157924 -148625629 + MLT2D LTR ERVL 378 414 0 1604 259 44 16 chr11 2157932 2158638 -148624915 - L1ME1 LINE L1 -2240 3889 3164 264 252 9 28 chr11 2162898 2163005 -148620548 + (GGGTG)n Simple_repeat Simple_repeat 2 106 0 300 231 51 0 chr11 2265604 2265682 -148517871 + AluJ/FRAM SINE Alu 217 298 -4 2127 127 3 0 chr11 2265687 2265994 -148517559 + AluSp SINE Alu 2 309 -4 231 62 0 62 chr11 2265994 2266042 -148517511 - L1MC/D LINE L1 -478 5855 5811 262 305 169 17 chr11 2266069 2266364 -148517189 - L1ME1 LINE L1 -4880 1239 900 2304 88 0 22 chr11 2266385 2266705 -148516848 - AluSq SINE Alu 0 313 1 227 277 72 0 chr11 2266827 2266910 -148516643 + L2 LINE L2 3225 3313 0 285 348 85 20 chr11 2267013 2267318 -148516235 - L1ME1 LINE L1 -5581 538 214 240 195 11 46 chr11 2267327 2267414 -148516139 + CT-rich Low_complexity Low_complexity 3 86 0 943 183 9 163 chr11 2267537 2267886 -148515667 - MER82 DNA MER2_type -314 339 45 2244 97 0 25 chr11 2267995 2268314 -148515239 - AluSx SINE Alu -1 311 1 316 377 47 19 chr11 2268421 2268687 -148514866 - L1M4c LINE L1 -2946 3436 2258 1716 186 0 7 chr11 2268711 2269018 -148514535 + AluJb SINE Alu 1 305 -7 1707 119 43 61 chr11 2269054 2269399 -148514154 + THE1C LTR MaLR 1 339 -36 465 133 0 0 chr11 2269399 2269474 -148514079 + (TCCC)n Simple_repeat Simple_repeat 3 77 0 304 246 100 9 chr11 2269596 2269706 -148513847 - MIR SINE MIR -58 150 31 187 294 59 0 chr11 2270368 2270419 -148513134 - L2 LINE L2 -608 2706 2653 816 196 0 0 chr11 2270524 2270703 -148512850 + (CAT)n Simple_repeat Simple_repeat 1 179 0 383 146 0 0 chr11 2270703 2270758 -148512795 + (CCA)n Simple_repeat Simple_repeat 3 57 0 990 176 0 0 chr11 2270758 2271087 -148512466 + (CAT)n Simple_repeat Simple_repeat 1 329 0 210 250 9 18 chr11 2271464 2271576 -148511977 + G-rich Low_complexity Low_complexity 2 112 0 263 313 0 30 chr11 2271576 2271675 -148511878 + GA-rich Low_complexity Low_complexity 4 99 0 2877 89 91 0 chr11 2272595 2273012 -148510541 + L1PA13 LINE L1 5708 6162 -1 385 181 0 36 chr11 2273047 2273130 -148510423 - L1M3 LINE L1 -469 5714 5635 1097 110 7 0 chr11 2273281 2273436 -148510117 - AluSq SINE Alu -157 156 1 282 136 153 0 chr11 2273436 2273495 -148510058 - L1MA8 LINE L1 -185 6106 6039 245 167 0 0 chr11 2273496 2273550 -148510003 - L1M3 LINE L1 -537 5646 5593 933 72 8 0 chr11 2273591 2273716 -148509837 + AluSp/q SINE Alu 188 313 0 4915 155 38 21 chr11 2273721 2273901 -148509652 - L1MA8 LINE L1 -10 6281 6105 1954 109 38 0 chr11 2273901 2274194 -148509359 - AluSx SINE Alu -4 308 5 4915 155 38 21 chr11 2274194 2275177 -148508376 - L1MA8 LINE L1 -186 6105 5106 857 163 59 50 chr11 2275170 2275391 -148508162 - L1M3 LINE L1 -576 5607 5385 * 830 130 0 23 chr11 2275396 2275527 -148508026 - FLAM_C SINE Alu -1 142 15 419 101 0 0 chr11 2275541 2275620 -148507933 - L1M3 LINE L1 -785 5395 5317 447 98 16 0 chr11 2275756 2275817 -148507736 - AluJ/FLAM SINE Alu -238 74 13 910 297 100 96 chr11 2275820 2276023 -148507530 - L1M4 LINE L1 -2849 3297 3096 2387 80 0 0 chr11 2276023 2276323 -148507230 - AluSg SINE Alu -9 301 2 910 297 100 96 chr11 2276323 2276582 -148506971 - L1M4 LINE L1 -3050 3096 2840 1968 139 0 0 chr11 2276582 2276870 -148506683 - AluJo SINE Alu -13 299 12 910 297 100 96 chr11 2276870 2277143 -148506410 - L1M4 LINE L1 -3306 2840 2558 2219 113 0 0 chr11 2277354 2277655 -148505898 - AluSx SINE Alu -6 306 6 2495 171 41 13 chr11 2278142 2278609 -148504944 + L1MA4 LINE L1 5810 6289 -11 8726 42 2 1 chr11 2279674 2280680 -148502873 + LTR13 LTR ERVK 1 1007 0 327 321 66 63 chr11 2282835 2283553 -148500000 + L1MEd LINE L1 704 1457 -4853 2060 116 0 38 chr11 2284859 2285179 -148498374 + AluSx SINE Alu 1 308 -4 1243 216 95 28 chr11 2285237 2285546 -148498007 - MLT1C LTR MaLR -52 415 73 2037 147 0 3 chr11 2285546 2285859 -148497694 + AluJb SINE Alu 1 312 0 1243 216 95 28 chr11 2285859 2285938 -148497615 - MLT1C LTR MaLR -394 73 1 1243 174 89 0 chr11 2286471 2286742 -148496811 - MLT1C LTR MaLR -2 430 170 26 0 0 27 chr11 2286745 2286758 -148496795 + AT_rich Low_complexity Low_complexity 1 13 -23 2234 77 7 0 chr11 2286758 2287045 -148496508 + AluSp SINE Alu 1 289 -24 26 0 0 27 chr11 2287045 2287068 -148496485 + AT_rich Low_complexity Low_complexity 13 36 0 204 40 0 0 chr11 2287071 2287096 -148496457 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 897 162 7 13 chr11 2287098 2287252 -148496301 - FRAM SINE Alu -30 146 1 751 118 77 29 chr11 2287252 2287422 -148496131 - MLT1C LTR MaLR -289 178 1 867 158 0 0 chr11 2287627 2287760 -148495793 - AluSq/x SINE Alu -179 133 1 1633 141 20 0 chr11 2288856 2289111 -148494442 - AluJo SINE Alu -35 277 18 213 218 18 0 chr11 2291429 2291484 -148492069 + (CAGCC)n Simple_repeat Simple_repeat 2 57 0 756 134 0 0 chr11 2294594 2294728 -148488825 + (TGGA)n Simple_repeat Simple_repeat 1 134 0 977 134 6 0 chr11 2294743 2294915 -148488638 + (TGGA)n Simple_repeat Simple_repeat 2 174 0 287 283 0 7 chr11 2296993 2297138 -148486415 + (CA)n Simple_repeat Simple_repeat 1 144 0 198 333 42 21 chr11 2297741 2297837 -148485716 + MIR SINE MIR 47 144 -64 904 224 97 21 chr11 2298013 2298405 -148485148 + MLT1C LTR MaLR 7 466 -1 464 293 67 67 chr11 2299082 2299457 -148484096 - MER113 DNA MER1_type? -83 438 64 660 264 42 10 chr11 2300168 2300379 -148483174 + MIR SINE MIR 42 261 -1 1523 150 24 53 chr11 2301761 2301864 -148481689 + MLT1B LTR MaLR 2 106 -284 995 9 0 0 chr11 2301864 2301995 -148481558 + L1PA5 LINE L1 6028 6158 0 1523 150 24 53 chr11 2301995 2302231 -148481322 + MLT1B LTR MaLR 106 332 -58 2334 94 7 0 chr11 2303624 2303932 -148479621 + AluSg SINE Alu 1 310 0 1694 163 34 3 chr11 2304621 2304915 -148478638 + AluJo SINE Alu 1 303 -9 913 223 35 1 chr11 2307509 2307847 -148475706 + MLT1B LTR MaLR 2 379 -11 244 276 134 39 chr11 2308106 2308233 -148475320 - MIR SINE MIR -103 159 21 229 301 11 21 chr11 2311171 2311264 -148472289 + G-rich Low_complexity Low_complexity 2 93 0 287 268 143 0 chr11 2312039 2312151 -148471402 - L3 LINE CR1 -108 1469 1342 245 316 22 22 chr11 2313960 2314099 -148469454 + L1MC5 LINE L1 5723 5861 -1947 771 111 0 0 chr11 2314119 2314227 -148469326 + AluSg/x SINE Alu 203 310 0 1177 272 68 53 chr11 2314250 2314923 -148468630 + L1MC5 LINE L1 6694 7376 -585 2222 113 7 0 chr11 2315221 2315531 -148468022 + AluSx SINE Alu 1 312 0 287 252 10 29 chr11 2315543 2315646 -148467907 + L1MC5 LINE L1 7701 7801 -160 296 206 17 39 chr11 2315797 2315977 -148467576 + GA-rich Low_complexity Low_complexity 3 178 0 900 205 65 0 chr11 2316719 2316934 -148466619 + L1MC2 LINE L1 6106 6334 -10 415 360 79 9 chr11 2316935 2317163 -148466390 + L1MCa LINE L1 1402 1645 -4781 1468 51 6 0 chr11 2317169 2317345 -148466208 + AluSp SINE Alu 1 177 -136 568 40 0 0 chr11 2317345 2317420 -148466133 + AluSp SINE Alu 228 302 -11 283 191 103 0 chr11 2317747 2317815 -148465738 + MIR SINE MIR 67 141 -121 2386 99 0 0 chr11 2318345 2318657 -148464896 - AluSx SINE Alu 0 312 1 320 308 50 33 chr11 2320004 2320124 -148463429 + MIR3 SINE MIR 58 179 -29 484 276 62 50 chr11 2322659 2323017 -148460536 + MER90 LTR ERV1 227 588 -26 198 0 0 0 chr11 2323464 2323486 -148460067 + (CAGC)n Simple_repeat Simple_repeat 3 24 0 2243 98 3 0 chr11 2325176 2325472 -148458081 - AluSp SINE Alu -16 297 1 1824 115 51 10 chr11 2325482 2325778 -148457775 - AluSx SINE Alu -2 310 3 269 133 0 0 chr11 2326896 2326941 -148456612 + MIR SINE MIR 113 157 -105 496 134 41 21 chr11 2326967 2327064 -148456489 + MER4A LTR ERV1 1 99 -565 1628 125 36 20 chr11 2327064 2327401 -148456152 + MER4A LTR ERV1 262 662 -2 3508 132 173 140 chr11 2327408 2328798 -148454755 + MER4A-int LTR ERV1 1 1435 -5163 1629 163 61 3 chr11 2328926 2329220 -148454333 - AluSx SINE Alu 0 312 2 2098 94 14 0 chr11 2329228 2329514 -148454039 - AluSp SINE Alu -23 290 1 764 185 31 25 chr11 2329537 2329699 -148453854 - FRAM SINE Alu -14 162 1 687 234 234 0 chr11 2329702 2329724 -148453829 + MER82 DNA MER2_type 352 368 -285 228 35 0 0 chr11 2329724 2329753 -148453800 + (CA)n Simple_repeat Simple_repeat 1 29 0 687 234 234 0 chr11 2329753 2329974 -148453579 + MER82 DNA MER2_type 368 652 -1 231 333 0 0 chr11 2329984 2330095 -148453458 + L1MCa LINE L1 2716 2826 -3600 1681 68 0 0 chr11 2330847 2331052 -148452501 + AluSq SINE Alu 1 205 -108 1055 169 34 0 chr11 2331052 2331229 -148452324 + AluSg/x SINE Alu 127 309 -1 186 43 0 0 chr11 2331266 2331289 -148452264 + (A)n Simple_repeat Simple_repeat 1 23 0 3947 183 20 40 chr11 2331291 2331438 -148452115 + L1P LINE L1 4398 4546 -1600 2158 103 0 0 chr11 2331438 2331745 -148451808 - AluSp SINE Alu 0 307 1 3947 183 20 40 chr11 2331745 2331821 -148451732 + L1P LINE L1 4546 4622 -1524 1803 167 10 13 chr11 2331821 2332133 -148451420 + AluJb SINE Alu 1 311 -1 3947 183 20 40 chr11 2332133 2332852 -148450701 + L1P LINE L1 4622 5323 -823 2097 121 3 0 chr11 2332852 2333141 -148450412 + AluSc SINE Alu 1 290 -19 3947 183 20 40 chr11 2333141 2333220 -148450333 + L1P LINE L1 5323 5402 -744 1147 132 44 4 chr11 2333220 2333448 -148450105 + THE1A LTR MaLR 1 237 -118 692 56 0 0 chr11 2333448 2333538 -148450015 + AluSp/q SINE Alu 215 304 -9 953 70 0 0 chr11 2333538 2333666 -148449887 + THE1A LTR MaLR 228 355 0 4817 83 39 0 chr11 2333667 2334387 -148449166 + THE1A-int LTR MaLR 3 750 -830 1342 126 13 4 chr11 2334387 2334617 -148448936 - THE1A LTR MaLR -123 232 1 3184 78 2 0 chr11 2334617 2335064 -148448489 - THE1A-int LTR MaLR 0 1580 1133 193 279 54 78 chr11 2337010 2337139 -148446414 + L2 LINE L2 3123 3248 -24 399 254 78 14 chr11 2338233 2338375 -148445178 + MLT1D LTR MaLR 1 151 -354 188 294 71 12 chr11 2338938 2339023 -148444530 + L2 LINE L2 3100 3189 -83 593 325 41 26 chr11 2339532 2339873 -148443680 - L1MB7 LINE L1 -195 5989 5644 386 174 45 39 chr11 2339994 2340149 -148443404 + (CCCTG)n Simple_repeat Simple_repeat 5 160 0 214 257 29 57 chr11 2340539 2340609 -148442944 + MIR SINE MIR 82 149 -59 216 228 52 57 chr11 2340806 2340910 -148442643 + MIR SINE MIR 25 102 -106 2181 102 0 19 chr11 2340910 2341225 -148442328 + AluSx SINE Alu 1 309 -3 216 228 52 57 chr11 2341225 2341248 -148442305 + MIR SINE MIR 102 124 -84 265 302 125 0 chr11 2342876 2342972 -148440581 - L3 LINE CR1 -489 1088 981 1045 181 0 11 chr11 2344036 2344218 -148439335 - AluJo SINE Alu -132 180 1 2145 122 0 0 chr11 2344252 2344547 -148439006 + AluSx SINE Alu 1 295 -17 1877 113 11 11 chr11 2344548 2344822 -148438731 + AluY SINE Alu 2 275 -36 915 100 0 0 chr11 2344822 2344952 -148438601 + AluY SINE Alu 173 302 -9 2396 146 15 34 chr11 2345129 2345159 -148438394 - MER57A LTR ERV1 0 403 374 186 71 0 0 chr11 2345159 2345187 -148438366 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 1941 110 7 11 chr11 2345191 2345472 -148438081 - AluSq SINE Alu -33 280 1 2396 146 15 34 chr11 2345472 2345847 -148437706 - MER57A LTR ERV1 -32 371 1 2238 99 3 6 chr11 2346641 2346955 -148436598 + AluSp SINE Alu 1 313 0 2088 97 3 14 chr11 2347136 2347424 -148436129 + AluSp SINE Alu 1 285 -28 228 67 0 0 chr11 2347424 2347454 -148436099 + (TA)n Simple_repeat Simple_repeat 2 31 0 2098 115 3 13 chr11 2347529 2347834 -148435719 - AluSq SINE Alu -11 302 1 507 65 0 13 chr11 2347834 2347911 -148435642 - MER4E LTR ERV1 -676 90 15 302 225 0 0 chr11 2348873 2348944 -148434609 - MER81 DNA DNA -6 108 38 332 253 75 71 chr11 2348967 2349242 -148434311 - MLT1C LTR MaLR -12 378 110 1814 147 0 14 chr11 2349257 2349419 -148434134 - AluJb SINE Alu -19 293 135 2305 108 0 0 chr11 2349419 2349724 -148433829 - AluSq SINE Alu -8 305 1 1814 147 0 14 chr11 2349724 2349854 -148433699 - AluJb SINE Alu -177 135 5 2122 121 0 10 chr11 2350005 2350311 -148433242 + AluSq SINE Alu 1 303 -10 2344 68 7 0 chr11 2350834 2351130 -148432423 - AluSc SINE Alu -11 298 1 1288 160 88 40 chr11 2351172 2351422 -148432131 + AluJb SINE Alu 39 300 -12 2147 102 0 7 chr11 2351422 2351742 -148431811 + AluSx SINE Alu 1 312 0 1003 234 151 13 chr11 2351751 2352135 -148431418 - L1MC4 LINE L1 -444 7598 7162 5807 77 48 6 chr11 2352310 2353237 -148430316 + MER4A-int LTR ERV1 1479 2450 -4148 2009 102 4 4 chr11 2353237 2353512 -148430041 + AluSg SINE Alu 19 293 -17 5807 77 48 6 chr11 2353512 2353560 -148429993 + MER4A-int LTR ERV1 2450 2495 -4103 1212 152 84 0 chr11 2353560 2353797 -148429756 - LTR8 LTR ERV1 -434 257 1 3317 130 83 53 chr11 2353800 2354437 -148429116 + MER4A-int LTR ERV1 2741 3416 -3182 2436 61 0 13 chr11 2354437 2354748 -148428805 - AluY SINE Alu -4 307 1 3317 130 83 53 chr11 2354748 2355023 -148428530 + MER4A-int LTR ERV1 3416 3681 -2917 * 15489 93 47 20 chr11 2355021 2356422 -148427131 + MER4A-int LTR ERV1 3836 5198 -1400 2417 88 0 0 chr11 2356422 2356730 -148426823 + AluSx SINE Alu 2 309 -3 15489 93 47 20 chr11 2356730 2358019 -148425534 + MER4A-int LTR ERV1 5198 6598 0 495 131 20 20 chr11 2358020 2358119 -148425434 + MER4A LTR ERV1 1 99 -565 1735 113 6 57 chr11 2358119 2358424 -148425129 + MER4A LTR ERV1 262 606 -58 2217 100 10 0 chr11 2358424 2358723 -148424830 - AluSx SINE Alu -10 302 1 1735 113 6 57 chr11 2358723 2358780 -148424773 + MER4A LTR ERV1 606 664 0 2171 116 0 3 chr11 2358865 2359166 -148424387 - AluSq SINE Alu -13 300 1 505 309 17 6 chr11 2359739 2359920 -148423633 + MER53 DNA DNA 1 183 -6 2263 80 17 3 chr11 2360909 2361208 -148422345 - AluSq SINE Alu -10 303 1 292 204 68 0 chr11 2361208 2361296 -148422257 + MER69 DNA AcHobo 2361 2454 -72 541 228 62 11 chr11 2361565 2361799 -148421754 + MLT1C LTR MaLR 72 373 -17 1181 265 73 0 chr11 2363113 2363426 -148420127 + MER58B DNA MER1_type 3 338 -3 318 297 58 36 chr11 2363597 2363735 -148419818 - MIR SINE MIR -33 229 89 655 236 56 15 chr11 2363911 2364106 -148419447 - MIR SINE MIR -45 217 15 205 239 65 76 chr11 2364299 2364391 -148419162 + L2 LINE L2 2883 2973 -299 414 57 0 0 chr11 2364643 2364696 -148418857 + (TGGA)n Simple_repeat Simple_repeat 4 56 0 1038 217 17 0 chr11 2365105 2365370 -148418183 + L1M4 LINE L1 5202 5470 -704 1291 86 0 56 chr11 2365370 2365395 -148418158 + AluY SINE Alu 118 143 -168 2383 41 3 7 chr11 2365395 2365690 -148417863 + AluY SINE Alu 17 310 -1 1291 86 0 56 chr11 2365690 2365861 -148417692 + AluY SINE Alu 143 303 -8 1081 179 20 99 chr11 2365865 2366167 -148417386 + L1M4 LINE L1 5479 5756 -418 445 281 126 7 chr11 2368449 2368584 -148414969 - MIR SINE MIR -100 162 12 190 262 0 0 chr11 2369997 2370039 -148413514 - MIR SINE MIR -63 145 104 236 225 30 175 chr11 2370478 2370644 -148412909 - MIR SINE MIR -65 143 3 830 145 6 23 chr11 2371162 2371472 -148412081 + (TCCA)n Simple_repeat Simple_repeat 1 305 0 235 314 82 57 chr11 2373185 2373344 -148410209 + MIR SINE MIR 77 239 -23 229 182 73 0 chr11 2374215 2374270 -148409283 - L2 LINE L2 -186 3086 3028 212 293 121 32 chr11 2374372 2374529 -148409024 - L2 LINE L2 -168 3104 2934 535 340 30 8 chr11 2376203 2376435 -148407118 + MIR SINE MIR 1 234 -28 481 281 65 0 chr11 2379017 2379170 -148404383 - MLT1C LTR MaLR 0 467 305 383 365 19 6 chr11 2379872 2380028 -148403525 - MIR SINE MIR -10 252 95 184 315 9 93 chr11 2381580 2381688 -148401865 + MER5B DNA MER1_type 13 111 -67 205 280 32 11 chr11 2382394 2382487 -148401066 - L2 LINE L2 -182 3090 2996 2452 152 67 0 chr11 2382788 2383189 -148400364 - MSTA LTR MaLR 0 428 1 2218 75 0 7 chr11 2383448 2383741 -148399812 - AluY SINE Alu -20 291 1 1191 216 36 88 chr11 2384186 2384571 -148398982 + MLT1A1 LTR MaLR 1 365 0 188 274 78 0 chr11 2384595 2384646 -148398907 - L3 LINE CR1 -12 1565 1511 251 182 55 0 chr11 2384722 2384777 -148398776 - MER117 DNA MER1_type -82 115 58 404 382 66 5 chr11 2384818 2385030 -148398523 - L3 LINE CR1 -374 1203 979 226 331 60 8 chr11 2385285 2385407 -148398146 + MIR SINE MIR 18 150 -69 1618 145 3 74 chr11 2385869 2386193 -148397360 + AluJb SINE Alu 6 306 -6 2312 65 14 0 chr11 2386524 2386815 -148396738 - AluSx SINE Alu -17 295 1 3066 230 17 25 chr11 2386986 2387926 -148395627 - L1M3 LINE L1 -704 5479 4547 3397 141 16 18 chr11 2388010 2388640 -148394913 + L1PA16 LINE L1 5460 6088 -78 401 213 0 0 chr11 2388905 2388985 -148394568 + L1PA16 LINE L1 6079 6158 -8 1013 67 6 16 chr11 2389015 2389233 -148394320 + L1HS LINE L1 5992 6180 0 282 209 58 23 chr11 2389300 2389386 -148394167 - MLT1I LTR MaLR -40 369 281 1072 266 18 35 chr11 2389549 2389818 -148393735 + MLT1A2 LTR MaLR 1 264 -110 2303 109 124 16 chr11 2389818 2390204 -148393349 + MSTA LTR MaLR 1 428 0 1072 266 18 35 chr11 2390204 2390272 -148393281 + MLT1A2 LTR MaLR 264 332 -42 1206 152 0 15 chr11 2390314 2390512 -148393041 - AluJo SINE Alu -37 275 81 2155 128 0 0 chr11 2390565 2390862 -148392691 - AluSx SINE Alu -15 297 1 482 292 87 5 chr11 2390889 2391074 -148392479 - MER3 DNA MER1_type 0 209 10 1337 184 78 73 chr11 2391579 2391782 -148391771 + MSTB1 LTR MaLR 6 207 -225 1450 166 7 50 chr11 2391782 2392084 -148391469 + AluJo SINE Alu 24 312 0 1337 184 78 73 chr11 2392084 2392305 -148391248 + MSTB1 LTR MaLR 207 432 0 1515 209 29 24 chr11 2393212 2393590 -148389963 + Ricksha_c DNA DNA 70 449 -1597 4685 155 34 19 chr11 2393767 2394662 -148388891 + Ricksha_c DNA DNA 454 1361 -685 2567 62 6 3 chr11 2394665 2395019 -148388534 + THE1A LTR MaLR 1 355 0 2928 161 34 58 chr11 2395019 2395383 -148388170 + Ricksha_c DNA DNA 1361 1732 -1522 1926 149 0 10 chr11 2395383 2395679 -148387874 - AluSx SINE Alu -19 293 1 2928 161 34 58 chr11 2395679 2395863 -148387690 + Ricksha_c DNA DNA 1732 1891 -1363 1854 132 39 0 chr11 2395863 2396144 -148387409 + AluSx SINE Alu 1 292 -20 2928 161 34 58 chr11 2396144 2396297 -148387256 + Ricksha_c DNA DNA 1891 2046 0 4572 222 127 20 chr11 2396299 2397424 -148386129 - L1ME1 LINE L1 -21 6145 5142 219 69 0 0 chr11 2397424 2397453 -148386100 + (TTTG)n Simple_repeat Simple_repeat 1 29 0 4572 222 127 20 chr11 2397453 2398547 -148385006 - L1ME1 LINE L1 -1024 5142 3694 237 270 283 4 chr11 2398682 2398854 -148384699 - MIR SINE MIR -21 187 16 713 309 104 24 chr11 2399045 2399594 -148383959 + L2 LINE L2 2714 3299 -14 187 225 25 0 chr11 2399924 2399964 -148383589 + L2 LINE L2 3211 3251 -21 418 264 71 14 chr11 2400092 2400232 -148383321 + MIR SINE MIR 96 243 -19 233 255 10 0 chr11 2400265 2400363 -148383190 + (ATGGTG)n Simple_repeat Simple_repeat 6 104 0 * 865 162 6 6 chr11 2400348 2400527 -148383026 + (ATG)n Simple_repeat Simple_repeat 1 179 0 785 189 0 6 chr11 2400571 2400751 -148382802 + (ATG)n Simple_repeat Simple_repeat 1 179 0 519 189 13 26 chr11 2400764 2400917 -148382636 + (ATGGTG)n Simple_repeat Simple_repeat 2 152 0 1904 193 52 25 chr11 2401057 2401535 -148382018 - Charlie1b DNA MER1_type -4 519 29 2468 59 0 0 chr11 2401604 2401907 -148381646 + AluSx SINE Alu 1 303 -9 1589 188 27 60 chr11 2402794 2403240 -148380313 + MLT1C LTR MaLR 37 467 0 180 103 29 59 chr11 2404740 2404808 -148378745 + (CAGAGA)n Simple_repeat Simple_repeat 1 66 0 325 325 65 56 chr11 2405168 2405399 -148378154 + MIR SINE MIR 21 253 -9 240 233 0 111 chr11 2405691 2405755 -148377798 + MIR SINE MIR 117 170 -92 2330 91 0 0 chr11 2405755 2406063 -148377490 + AluSg SINE Alu 1 308 -2 240 233 0 111 chr11 2406063 2406088 -148377465 + MIR SINE MIR 170 196 -66 436 276 17 17 chr11 2406405 2406546 -148377007 + MIR SINE MIR 104 243 -19 678 259 38 28 chr11 2406710 2406922 -148376631 - MER20 DNA MER1_type 0 219 6 282 333 16 40 chr11 2407113 2407239 -148376314 - MIR SINE MIR -51 211 89 228 367 28 0 chr11 2407351 2407460 -148376093 - MIR SINE MIR -102 160 49 25 0 0 0 chr11 2409458 2409483 -148374070 + GC_rich Low_complexity Low_complexity 1 25 0 27 29 0 0 chr11 2409516 2409550 -148374003 + GC_rich Low_complexity Low_complexity 1 34 0 383 312 75 48 chr11 2412348 2412946 -148370607 + L2 LINE L2 2451 3073 -240 191 274 14 68 chr11 2414805 2414878 -148368675 + MIR3 SINE MIR 99 167 -41 248 217 50 0 chr11 2417793 2417853 -148365700 + MIR SINE MIR 82 144 -118 2229 82 0 0 chr11 2419245 2419568 -148363985 - AluSc SINE Alu 0 323 1 1000 188 0 0 chr11 2419619 2419789 -148363764 - FRAM SINE Alu -10 166 1 299 288 39 10 chr11 2421868 2422045 -148361508 + MIR SINE MIR 6 241 -21 2034 55 76 7 chr11 2422405 2422680 -148360873 + AluY SINE Alu 1 294 -17 755 282 47 28 chr11 2423016 2423271 -148360282 - MIR SINE MIR -1 261 2 369 333 37 0 chr11 2424079 2424241 -148359312 - MER5A DNA MER1_type -13 176 9 2275 72 3 0 chr11 2424315 2424643 -148358910 + AluSx SINE Alu 1 312 0 33 25 0 0 chr11 2425322 2425362 -148358191 + AT_rich Low_complexity Low_complexity 1 40 0 225 321 94 19 chr11 2425477 2425583 -148357970 - MIR SINE MIR -25 237 124 238 276 115 0 chr11 2425735 2425822 -148357731 - L1ME4a LINE L1 -3 6118 6022 198 342 54 36 chr11 2426129 2426240 -148357313 + MIR SINE MIR 71 183 -79 197 387 93 34 chr11 2426831 2427154 -148356399 - L2 LINE L2 0 3272 2931 444 263 15 0 chr11 2428427 2428564 -148354989 - MER67B LTR ERV1 0 661 523 969 184 0 0 chr11 2428564 2428754 -148354799 + FRAM SINE Alu 1 176 0 454 278 131 27 chr11 2428754 2429171 -148354382 - MER67B LTR ERV1 -128 533 34 1059 174 0 0 chr11 2429319 2429480 -148354073 + U1 snRNA snRNA 1 161 -4 554 236 185 10 chr11 2429517 2429712 -148353841 - L1MB5 LINE L1 -18 6156 5928 2532 53 0 0 chr11 2430541 2430842 -148352711 - AluY SINE Alu -10 301 1 2226 68 0 0 chr11 2432275 2432556 -148350997 + AluY SINE Alu 1 281 -30 1910 126 50 0 chr11 2433144 2433421 -148350132 + AluSg SINE Alu 1 291 -19 701 150 0 9 chr11 2435301 2435414 -148348139 + AluY SINE Alu 184 295 -16 389 267 196 10 chr11 2436348 2436553 -148347000 + MIR SINE MIR 23 262 0 2238 159 68 12 chr11 2437456 2437865 -148345688 - Tigger2a DNA MER2_type -1 433 2 454 304 60 51 chr11 2439295 2439512 -148344041 - MIR SINE MIR -31 231 13 373 102 0 0 chr11 2440826 2440885 -148342668 - L1MB2 LINE L1 0 6171 6113 2252 218 32 4 chr11 2440909 2441445 -148342108 - L1MB5 LINE L1 -282 5901 5351 546 339 116 31 chr11 2441445 2441522 -148342031 - L1MC/D LINE L1 -566 5956 5887 972 285 146 43 chr11 2441522 2442030 -148341523 - MER68 LTR ERV1 -2 560 1 546 339 116 31 chr11 2442030 2442055 -148341498 - L1MC/D LINE L1 -635 5887 5866 1826 176 0 7 chr11 2442055 2442356 -148341197 + AluJo SINE Alu 1 299 -13 546 339 116 31 chr11 2442356 2442641 -148340912 - L1MC/D LINE L1 -656 5866 5535 1846 157 71 0 chr11 2442643 2443007 -148340546 + MSTC LTR MaLR 1 390 -38 2099 107 0 20 chr11 2443007 2443306 -148340247 + AluSc SINE Alu 1 293 -16 2283 94 7 0 chr11 2443320 2443629 -148339924 + AluSx SINE Alu 1 311 -1 185 139 23 0 chr11 2443633 2443676 -148339877 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 820 193 0 0 chr11 2443759 2443894 -148339659 + AluJo SINE Alu 1 135 -177 26 0 0 0 chr11 2443894 2443920 -148339633 + AT_rich Low_complexity Low_complexity 1 26 0 1057 300 94 82 chr11 2444004 2444776 -148338777 - L1MC/D LINE L1 -1500 4926 2769 1679 182 74 12 chr11 2444782 2445199 -148338354 - L1MC1 LINE L1 -5 6328 5886 863 221 4 65 chr11 2445238 2445469 -148338084 - MER21B LTR ERV1 -72 791 575 2031 135 7 0 chr11 2445470 2445773 -148337780 + AluSc SINE Alu 1 305 -4 549 44 0 0 chr11 2445773 2445841 -148337712 + (GGGA)n Simple_repeat Simple_repeat 2 69 0 2092 167 28 0 chr11 2445845 2446240 -148337313 - L1MC/D LINE L1 -5930 496 91 12557 81 2 21 chr11 2546270 2548020 -148235533 - L1P3 LINE L1 -4738 1723 8 337 179 60 12 chr11 2548027 2548111 -148235442 - MLT1B LTR MaLR -210 180 93 2503 34 41 0 chr11 2548777 2549071 -148234482 - AluY SINE Alu -5 306 1 40 21 0 0 chr11 2549076 2549123 -148234430 + AT_rich Low_complexity Low_complexity 1 47 0 262 261 14 14 chr11 2549879 2549948 -148233605 - HERVL LTR ERVL -3194 2460 2392 271 287 47 67 chr11 2551338 2551488 -148232065 + MIR SINE MIR 70 216 -46 1429 183 57 89 chr11 2551996 2552197 -148231356 + MER57A LTR ERV1 13 196 -207 2095 129 10 0 chr11 2552197 2552492 -148231061 + AluSx SINE Alu 1 298 -14 1429 183 57 89 chr11 2552492 2552694 -148230859 + MER57A LTR ERV1 196 403 0 216 289 36 12 chr11 2552699 2552782 -148230771 - MIR SINE MIR -130 132 48 2178 116 34 0 chr11 2552838 2553131 -148230422 - AluSx SINE Alu -9 303 1 247 310 177 0 chr11 2555241 2555354 -148228199 - MIR SINE MIR -51 211 79 1087 170 28 161 chr11 2555977 2556407 -148227146 + MER93b LTR ERV1 1 373 0 4659 86 7 18 chr11 2556449 2557002 -148226551 - L1PA11 LINE L1 -128 6046 5500 2105 91 62 0 chr11 2557002 2557278 -148226275 - AluSg SINE Alu -17 293 1 4659 86 7 18 chr11 2557278 2557398 -148226155 - L1PA11 LINE L1 -674 5500 5380 404 240 39 0 chr11 2557484 2557588 -148225965 + MER5A DNA MER1_type 76 183 -6 726 185 20 20 chr11 2558592 2558794 -148224759 + L1MA8 LINE L1 5971 6181 -124 196 303 28 46 chr11 2559057 2559166 -148224387 + MIR SINE MIR 35 141 -67 377 289 16 31 chr11 2559234 2559362 -148224191 - L2 LINE L2 -10 3262 3137 189 0 0 0 chr11 2559579 2559600 -148223953 + (CAGA)n Simple_repeat Simple_repeat 2 22 0 327 350 64 6 chr11 2559600 2559757 -148223796 + MIR SINE MIR 49 214 -48 3529 105 8 12 chr11 2560328 2560843 -148222710 + LTR10D LTR ERV1 1 513 0 2134 138 3 0 chr11 2561726 2562031 -148221522 + AluSx SINE Alu 1 306 -6 298 289 26 46 chr11 2562538 2562690 -148220863 - MLT2F LTR ERVL -5 658 510 1150 256 140 43 chr11 2562708 2563162 -148220391 + MLT1E LTR MaLR 23 530 -63 2240 115 0 0 chr11 2563162 2563457 -148220096 - AluSx SINE Alu -17 295 1 1150 256 140 43 chr11 2563457 2563494 -148220059 + MLT1E LTR MaLR 530 562 -31 2441 84 0 3 chr11 2563544 2563854 -148219699 - AluY SINE Alu -2 309 1 2899 157 10 29 chr11 2564159 2564682 -148218871 - L1MA8 LINE L1 -159 6132 5620 2315 108 129 5 chr11 2564880 2565259 -148218294 - MSTA LTR MaLR -2 426 1 206 372 0 13 chr11 2565553 2565631 -148217922 + MIR3 SINE MIR 89 165 -43 441 139 13 0 chr11 2565770 2565849 -148217704 - MADE1 DNA Mariner 0 80 1 235 263 92 20 chr11 2567761 2567913 -148215640 - L1ME3 LINE L1 -91 6071 5909 1532 196 0 27 chr11 2569431 2569732 -148213821 + AluJb SINE Alu 1 293 -19 186 330 89 22 chr11 2571564 2571743 -148211810 - MIR SINE MIR -44 218 28 1412 154 32 0 chr11 2573500 2573721 -148209832 + MER30 DNA MER1_type 1 228 -2 572 276 118 26 chr11 2574210 2574514 -148209039 + L1ME2 LINE L1 5811 6142 -22 213 209 0 0 chr11 2574635 2574678 -148208875 + (TGGA)n Simple_repeat Simple_repeat 3 45 0 499 269 100 45 chr11 2575023 2575385 -148208168 + L1ME1 LINE L1 5745 6125 -41 23 33 0 0 chr11 2575583 2575613 -148207940 + AT_rich Low_complexity Low_complexity 1 30 0 1606 165 15 4 chr11 2577275 2577548 -148206005 - AluJo SINE Alu -22 290 15 240 207 35 0 chr11 2577724 2577782 -148205771 + G-rich Low_complexity Low_complexity 5 64 0 231 114 0 0 chr11 2577791 2577826 -148205727 + (GGGGA)n Simple_repeat Simple_repeat 1 35 0 566 211 26 0 chr11 2578189 2578303 -148205250 + AluJo SINE Alu 90 206 -106 3421 203 85 34 chr11 2578327 2580068 -148203485 + L1MA8 LINE L1 4474 6291 0 1894 138 0 4 chr11 2580199 2580467 -148203086 - AluSx SINE Alu -45 267 1 2286 98 0 7 chr11 2580913 2581210 -148202343 - AluSx SINE Alu -13 299 5 28 0 0 0 chr11 2582210 2582238 -148201315 + AT_rich Low_complexity Low_complexity 1 28 0 1771 187 3 16 chr11 2582648 2582963 -148200590 - AluJo SINE Alu -1 311 1 3536 71 0 0 chr11 2583472 2583910 -148199643 - LTR21B LTR ERV1 0 438 1 1806 243 19 63 chr11 2583910 2584532 -148199021 - HERVFH21 LTR ERV1 0 6529 5935 20686 137 30 21 chr11 2584533 2588645 -148194908 - HERVFH21 LTR ERV1 -1791 4738 539 1794 200 60 25 chr11 2588639 2589184 -148194369 - HERVFH21 LTR ERV1 -5951 578 1 * 3478 58 11 0 chr11 2589185 2589618 -148193935 - LTR21B LTR ERV1 0 438 1 226 310 58 7 chr11 2592631 2592786 -148190767 + L1M4c LINE L1 1951 2113 -4917 764 261 67 71 chr11 2592821 2593072 -148190481 + L1M4c LINE L1 2013 2264 -4842 1790 181 0 10 chr11 2593072 2593364 -148190189 + AluJb SINE Alu 1 289 -23 764 261 67 71 chr11 2593364 2594834 -148188719 + L1M4c LINE L1 2264 3837 -3269 987 275 22 16 chr11 2594845 2595165 -148188388 + L1 LINE L1 4519 4840 -1306 237 363 6 0 chr11 2595198 2595355 -148188198 + L1M3 LINE L1 1684 1841 -5009 * 400 248 14 35 chr11 2595334 2595475 -148188078 + L1M3 LINE L1 2464 2601 -4248 567 208 32 8 chr11 2595482 2595607 -148187946 + FLAM_C SINE Alu 6 133 -10 897 265 123 33 chr11 2595801 2596793 -148186760 + L1M3 LINE L1 2493 3569 -3279 1847 230 111 36 chr11 2596838 2597273 -148186280 + L1M3 LINE L1 5246 5647 -1226 2594 51 0 22 chr11 2597273 2597588 -148185965 + AluY SINE Alu 1 308 -3 1847 230 111 36 chr11 2597588 2598094 -148185459 + L1M3 LINE L1 5647 6311 -562 1753 170 0 0 chr11 2598094 2598377 -148185176 + AluJb SINE Alu 15 297 -15 1847 230 111 36 chr11 2598377 2598604 -148184949 + L1M3 LINE L1 6311 6520 -353 2188 91 7 21 chr11 2599088 2599398 -148184155 + AluSp SINE Alu 2 307 0 269 271 21 21 chr11 2599520 2599616 -148183937 + L1MA9 LINE L1 3 98 -5857 485 275 8 0 chr11 2599626 2599746 -148183807 + FLAM_C SINE Alu 4 124 -19 259 297 0 0 chr11 2599746 2599810 -148183743 + L1MA9 LINE L1 92 155 -5800 * 1735 264 44 15 chr11 2599807 2600395 -148183158 + L1MA9 LINE L1 4463 5067 -967 310 240 53 0 chr11 2600458 2600533 -148183020 + MADE1 DNA Mariner 1 79 -1 2829 228 44 22 chr11 2600534 2601310 -148182243 + L1MA9 LINE L1 5378 6170 -30 434 165 1 3 chr11 2601360 2601466 -148182087 + L1MA4 LINE L1 5745 5849 -314 226 143 54 0 chr11 2601498 2601554 -148181999 - L1MCa LINE L1 -4362 2064 2006 254 364 0 0 chr11 2603366 2603465 -148180088 - MER5A DNA MER1_type -80 109 11 500 254 113 24 chr11 2603621 2603834 -148179719 + L1MC4 LINE L1 7278 7509 -533 1995 138 0 7 chr11 2604041 2604338 -148179215 - AluSx SINE Alu -16 296 2 246 300 100 27 chr11 2605317 2605467 -148178086 + MER5B DNA MER1_type 17 177 -1 1162 78 203 5 chr11 2607568 2607760 -148175793 + MER30 DNA MER1_type 1 230 0 2446 59 0 0 chr11 2609333 2609620 -148173933 + AluSx SINE Alu 1 287 -25 1179 280 19 24 chr11 2609624 2609996 -148173557 + MER93a LTR ERV1 7 376 -26 28 0 0 0 chr11 2610182 2610210 -148173343 + GC_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr11 2610734 2610758 -148172795 + AT_rich Low_complexity Low_complexity 1 24 0 819 263 103 0 chr11 2610882 2611163 -148172390 - MER33 DNA MER1_type -14 310 1 1368 234 119 66 chr11 2611708 2612070 -148171483 - MLT1H LTR MaLR 0 549 151 2695 98 0 3 chr11 2612070 2612426 -148171127 + THE1A LTR MaLR 1 355 0 1368 234 119 66 chr11 2612426 2612577 -148170976 - MLT1H LTR MaLR -398 151 9 299 284 66 47 chr11 2612577 2612729 -148170824 - MIR SINE MIR -54 154 4 468 269 46 29 chr11 2613262 2613437 -148170116 + MER5B DNA MER1_type 1 178 0 642 125 9 9 chr11 2613439 2613551 -148170002 - L1PA13 LINE L1 0 6163 6052 235 306 14 0 chr11 2613551 2613623 -148169930 + L2 LINE L2 3232 3304 -9 595 309 15 15 chr11 2614427 2614631 -148168922 - MIR SINE MIR -37 225 22 260 222 19 0 chr11 2614627 2614681 -148168872 - L2 LINE L2 0 3272 3218 * 327 322 14 61 chr11 2614854 2614910 -148168643 - MIR SINE MIR -49 213 156 2391 63 0 10 chr11 2614910 2615213 -148168340 + AluY SINE Alu 1 300 -11 327 322 14 61 chr11 2615213 2615370 -148168183 - MIR SINE MIR -106 156 10 280 285 71 32 chr11 2616425 2616706 -148166847 - HAL1 LINE L1 -1124 1383 1092 1125 186 11 76 chr11 2616732 2617007 -148166546 - L1MC1 LINE L1 0 6333 6077 302 280 119 0 chr11 2617310 2617453 -148166100 + L1P LINE L1 3725 3884 -2262 873 192 41 0 chr11 2617922 2618094 -148165459 - MSTD LTR MaLR 0 396 218 882 256 231 23 chr11 2618182 2618459 -148165094 + SATR1 Satellite Satellite 1 219 -2272 2411 54 0 0 chr11 2618459 2618756 -148164797 + AluY SINE Alu 1 297 -14 882 256 231 23 chr11 2618756 2620243 -148163310 + SATR1 Satellite Satellite 219 2489 -2 1034 227 192 48 chr11 2620267 2622051 -148161502 + SATR1 Satellite Satellite 1 2041 -404 1968 128 0 3 chr11 2623755 2624059 -148159494 + AluY SINE Alu 1 303 -8 213 250 81 81 chr11 2624117 2624253 -148159300 - L2 LINE L2 0 3272 3137 2012 128 0 6 chr11 2624619 2624931 -148158622 - AluSg SINE Alu 0 310 1 228 395 45 14 chr11 2625323 2625543 -148158010 + MIR SINE MIR 32 258 -4 3407 209 17 63 chr11 2625863 2626879 -148156674 - LTR5 LTR ERVK 0 969 1 31 0 0 0 chr11 2627335 2627366 -148156187 + AT_rich Low_complexity Low_complexity 1 31 0 1225 225 15 44 chr11 2627386 2627639 -148155914 - L1MB3 LINE L1 -30 6153 5911 1874 153 0 7 chr11 2627639 2627933 -148155620 - AluSx SINE Alu -18 294 3 1225 225 15 44 chr11 2627933 2628021 -148155532 - L1MB3 LINE L1 -272 5911 5822 272 83 21 0 chr11 2628022 2628070 -148155483 + (TTTTG)n Simple_repeat Simple_repeat 1 49 0 7680 91 69 71 chr11 2628101 2629405 -148154148 + SVA Other Other 85 1386 0 732 228 41 15 chr11 2629423 2629643 -148153910 + MLT1C LTR MaLR 238 363 -2 2769 81 100 5 chr11 2630099 2630508 -148153045 + LTR7 LTR ERV1 1 448 -2 246 282 77 0 chr11 2631197 2631275 -148152278 + MLT1J2 LTR MaLR 252 335 -115 2009 133 3 0 chr11 2631655 2631964 -148151589 + AluSx SINE Alu 1 310 -2 1017 196 72 0 chr11 2633272 2633481 -148150072 + MER58A DNA MER1_type 1 224 0 231 353 0 0 chr11 2633678 2633746 -148149807 + L2 LINE L2 3153 3220 -52 1902 123 35 0 chr11 2634576 2634861 -148148692 + AluSx SINE Alu 5 299 -13 1974 128 24 0 chr11 2635242 2635538 -148148015 - AluSx SINE Alu -9 303 1 1779 119 32 11 chr11 2636811 2637096 -148146457 - AluSx SINE Alu -21 291 1 1899 101 4 14 chr11 2637174 2637483 -148146070 - AluSq SINE Alu 0 313 16 625 133 0 0 chr11 2637484 2637599 -148145954 + AluSg/x SINE Alu 199 310 0 431 73 176 0 chr11 2638134 2638202 -148145351 - MADE1 DNA Mariner 0 80 1 825 245 40 0 chr11 2639435 2639635 -148143918 - MER58A DNA MER1_type -16 208 1 2170 96 3 13 chr11 2642103 2642405 -148141148 + AluSx SINE Alu 1 299 -13 378 0 0 0 chr11 2642406 2642448 -148141105 + (CA)n Simple_repeat Simple_repeat 1 42 0 1028 147 58 0 chr11 2642509 2642699 -148140854 - AluJo SINE Alu -6 306 106 1839 124 13 52 chr11 2642737 2643043 -148140510 - AluSx SINE Alu -11 301 8 1184 110 12 0 chr11 2643181 2643354 -148140199 + MER30 DNA MER1_type 1 175 -55 1317 151 5 0 chr11 2643472 2643691 -148139862 - AluJo SINE Alu -92 220 1 275 280 144 8 chr11 2643964 2644096 -148139457 + MIR SINE MIR 81 230 -32 247 254 15 15 chr11 2644254 2644321 -148139232 - MIR SINE MIR -115 147 81 628 314 74 0 chr11 2646088 2646317 -148137236 + L1MD2 LINE L1 5763 6008 -351 1782 128 45 14 chr11 2646374 2646530 -148137023 - AluSg SINE Alu -11 299 128 2198 104 3 0 chr11 2646530 2646829 -148136724 - AluSq SINE Alu -13 300 1 1782 128 45 14 chr11 2646829 2646960 -148136593 - AluSg SINE Alu -182 128 3 301 290 73 67 chr11 2647039 2647180 -148136373 - MIR SINE MIR -68 140 43 709 153 51 8 chr11 2647482 2647600 -148135953 + FLAM_A SINE Alu 4 126 -7 2050 132 3 0 chr11 2648099 2648403 -148135150 + AluSx SINE Alu 1 305 -7 510 275 194 14 chr11 2648415 2648782 -148134771 - LTR33A LTR ERVL -16 507 75 1990 141 0 0 chr11 2649677 2649974 -148133579 - AluSx SINE Alu -15 297 1 841 262 88 31 chr11 2651429 2651914 -148131639 + L2 LINE L2 2777 3312 -1 865 247 64 0 chr11 2651914 2652149 -148131404 - MIR SINE MIR 0 262 13 180 136 45 68 chr11 2652174 2652218 -148131335 + MIR SINE MIR 135 177 -85 413 253 88 50 chr11 2654418 2654600 -148128953 - L2 LINE L2 -3 3310 3122 2235 90 3 7 chr11 2655646 2655956 -148127597 - AluSq SINE Alu -4 309 1 1885 107 32 0 chr11 2656050 2656331 -148127222 - AluSc SINE Alu -19 290 1 1510 178 28 14 chr11 2656988 2657274 -148126279 + AluJo SINE Alu 1 290 -22 1442 192 27 72 chr11 2657294 2657447 -148126106 + MLT1C LTR MaLR 41 199 -268 1959 124 3 7 chr11 2657447 2657745 -148125808 + AluSx SINE Alu 1 297 -15 1442 192 27 72 chr11 2657745 2657992 -148125561 + MLT1C LTR MaLR 199 423 -44 2100 121 3 0 chr11 2658016 2658322 -148125231 - AluSq SINE Alu -6 307 1 1470 170 58 7 chr11 2658328 2658605 -148124948 - AluJo SINE Alu -21 291 1 538 164 95 9 chr11 2658606 2658722 -148124831 - MER45A DNA AcHobo -52 126 1 1454 176 127 0 chr11 2659502 2659769 -148123784 - AluJo SINE Alu -1 301 1 555 251 91 23 chr11 2660880 2661099 -148122454 - MIR SINE MIR 0 262 29 1331 185 46 73 chr11 2661261 2661563 -148121990 - AluJo SINE Alu -18 294 1 2016 126 7 10 chr11 2661761 2662071 -148121482 + AluSx SINE Alu 2 310 -2 2162 107 0 7 chr11 2662692 2663002 -148120551 - AluSx SINE Alu -4 308 1 1670 182 3 43 chr11 2663104 2663292 -148120261 - AluJb SINE Alu -1 311 140 1892 113 65 28 chr11 2663292 2663583 -148119970 - AluSx SINE Alu -10 302 1 1670 182 3 43 chr11 2663583 2663718 -148119835 - AluJb SINE Alu -172 140 1 1941 180 20 87 chr11 2663729 2663799 -148119754 - L1MB7 LINE L1 0 6184 6111 1883 157 3 10 chr11 2663799 2664099 -148119454 + AluJb SINE Alu 1 298 -14 1941 180 20 87 chr11 2664099 2664612 -148118941 - L1MB7 LINE L1 -73 6111 5643 4023 118 99 94 chr11 2664812 2666178 -148117375 - pTR5 LTR ERV1 0 2438 742 2282 158 46 11 chr11 2666178 2666615 -148116938 - MER66B LTR ERV1 -34 452 1 1539 172 0 16 chr11 2666615 2666865 -148116688 - AluJb SINE Alu -66 246 1 313 315 54 15 chr11 2666885 2667015 -148116538 + MIR SINE MIR 96 230 -32 1900 173 0 22 chr11 2667037 2667355 -148116198 - AluJo SINE Alu -1 311 1 183 167 0 0 chr11 2667494 2667536 -148116017 + (TTATA)n Simple_repeat Simple_repeat 1 42 0 2325 103 0 0 chr11 2667536 2667826 -148115727 - AluSx SINE Alu -22 290 1 534 286 14 0 chr11 2668703 2668850 -148114703 - MER104 DNA Tc2 -4 176 28 372 296 16 40 chr11 2668886 2669011 -148114542 + L1MC4 LINE L1 6582 6703 -1339 1501 157 0 67 chr11 2669025 2669136 -148114417 - AluJo SINE Alu -63 249 132 2025 161 0 0 chr11 2669136 2669434 -148114119 - AluSx SINE Alu -14 298 1 1501 157 0 67 chr11 2669434 2669589 -148113964 - AluJo SINE Alu -180 132 1 1153 101 0 0 chr11 2669684 2669832 -148113721 - AluSp/q SINE Alu -5 308 161 358 288 17 45 chr11 2670027 2670204 -148113349 + MLT1K LTR MaLR 98 269 -319 542 133 0 0 chr11 2670396 2670471 -148113082 + Alu SINE Alu 220 294 -17 1517 156 67 25 chr11 2670481 2670763 -148112790 + AluJo SINE Alu 1 294 -18 398 257 176 0 chr11 2670769 2670905 -148112648 + MIR SINE MIR 31 190 -72 914 212 69 0 chr11 2671543 2671760 -148111793 + LTR16A1 LTR ERVL 226 457 0 395 268 68 63 chr11 2671884 2672074 -148111479 + L2 LINE L2 3120 3310 -3 2088 155 0 3 chr11 2672132 2672442 -148111111 - AluSg SINE Alu -1 309 1 255 79 0 0 chr11 2673015 2673053 -148110500 + (CA)n Simple_repeat Simple_repeat 1 38 0 240 161 0 0 chr11 2674250 2674312 -148109241 + GA-rich Low_complexity Low_complexity 1 62 0 787 266 99 9 chr11 2675135 2675368 -148108185 + MIR SINE MIR 3 256 -6 729 181 23 84 chr11 2675517 2675585 -148107968 - MER3 DNA MER1_type 0 209 138 2149 126 3 0 chr11 2675585 2675878 -148107675 + AluSx SINE Alu 1 294 -18 729 181 23 84 chr11 2675878 2676024 -148107529 - MER3 DNA MER1_type -71 138 8 3308 139 50 2 chr11 2676044 2676547 -148107006 - MER1A DNA MER1_type 0 527 1 2302 108 0 0 chr11 2676634 2676931 -148106622 - AluSq SINE Alu -16 297 1 592 246 33 30 chr11 2676948 2677152 -148106401 - MIR SINE MIR -40 222 23 353 284 74 0 chr11 2677515 2677610 -148105943 - L2 LINE L2 -12 3260 3159 487 270 82 19 chr11 2677636 2677795 -148105758 - MIR SINE MIR -15 247 79 2871 221 28 58 chr11 2678113 2678976 -148104577 - LTR5 LTR ERVK 0 969 133 253 282 40 74 chr11 2729054 2729203 -148054350 + MER5A DNA MER1_type 32 175 -3 2115 121 14 7 chr11 2729496 2729786 -148053767 - AluSc SINE Alu -17 292 1 570 286 96 64 chr11 2729867 2730241 -148053312 + L1MC5 LINE L1 7548 7933 -28 1872 167 20 10 chr11 2730243 2730543 -148053010 + AluJb SINE Alu 1 303 -9 241 250 164 3 chr11 2730986 2731100 -148052453 - MIR SINE MIR -47 161 31 2160 148 3 0 chr11 2731454 2731765 -148051788 - AluSx SINE Alu 0 312 1 220 346 9 37 chr11 2731879 2731986 -148051567 - MIR SINE MIR -46 216 113 443 277 92 11 chr11 2732428 2732612 -148050941 - MIR SINE MIR -52 210 12 180 325 0 65 chr11 2732594 2732671 -148050882 + L2 LINE L2 3241 3312 -1 * 504 246 0 0 chr11 2732685 2732930 -148050623 + (TGGA)n Simple_repeat Simple_repeat 1 245 0 621 174 0 0 chr11 2732967 2733099 -148050454 + (TGGA)n Simple_repeat Simple_repeat 1 132 0 327 238 135 40 chr11 2734135 2734261 -148049292 + MIR SINE MIR 10 147 -115 283 301 168 38 chr11 2734265 2734611 -148048942 - L2 LINE L2 -2 3311 2921 2304 105 13 7 chr11 2734954 2735260 -148048293 + AluSq SINE Alu 1 308 -5 190 276 53 40 chr11 2735302 2735378 -148048175 + L3 LINE CR1 230 306 -1271 775 217 6 0 chr11 2735957 2736132 -148047421 + MER53 DNA DNA 14 189 0 316 268 0 52 chr11 2736726 2736823 -148046730 - MIR SINE MIR -70 192 101 283 378 27 5 chr11 2737136 2737321 -148046232 + L1MC/D LINE L1 5611 5799 -2009 2027 84 3 0 chr11 2737506 2737790 -148045763 + L1PA8 LINE L1 5886 6170 -2 1459 123 25 185 chr11 2737904 2738271 -148045282 - AluSg SINE Alu -2 308 1 2315 107 13 0 chr11 2738893 2739192 -148044361 - AluSx SINE Alu -9 303 1 986 192 25 5 chr11 2740094 2740292 -148043261 - MER58A DNA MER1_type -14 210 9 2450 133 52 36 chr11 2740701 2740875 -148042678 + L1MA8 LINE L1 5777 5947 -344 1804 186 6 3 chr11 2740875 2741186 -148042367 + AluJo SINE Alu 1 312 0 2450 133 52 36 chr11 2741186 2741515 -148042038 + L1MA8 LINE L1 5947 6288 -3 25 0 0 0 chr11 2741550 2741575 -148041978 + AT_rich Low_complexity Low_complexity 1 25 0 2197 117 13 13 chr11 2741580 2741887 -148041666 - AluSx SINE Alu -3 309 3 1303 156 54 0 chr11 2742119 2742324 -148041229 + AluSx SINE Alu 1 216 -96 247 365 64 0 chr11 2742352 2742555 -148040998 + L2 LINE L2 2155 2370 -944 2150 131 0 0 chr11 2743670 2743967 -148039586 + AluSx SINE Alu 8 304 -8 371 315 54 22 chr11 2743970 2744154 -148039399 - MIR SINE MIR -32 230 41 642 209 39 96 chr11 2744183 2744413 -148039140 + MER20 DNA MER1_type 1 217 -2 200 184 0 0 chr11 2744845 2744883 -148038670 + C-rich Low_complexity Low_complexity 1 38 0 1452 175 14 37 chr11 2745732 2746029 -148037524 - AluJb SINE Alu -22 290 1 625 290 16 36 chr11 2746112 2746360 -148037193 - MIR SINE MIR -12 250 8 295 280 118 48 chr11 2748478 2748923 -148034630 - L2 LINE L2 -11 3261 2803 242 301 88 0 chr11 2749397 2749510 -148034043 + L2 LINE L2 3178 3300 -13 433 293 16 0 chr11 2749600 2749723 -148033830 - MIR SINE MIR -38 224 100 2734 216 57 7 chr11 2749740 2750342 -148033211 + ERVL LTR ERVL 1518 2149 -3615 215 317 17 0 chr11 2750347 2750407 -148033146 - MIR SINE MIR -187 75 15 2123 108 4 0 chr11 2750658 2750975 -148032578 + AluSc SINE Alu 1 318 0 2501 67 0 26 chr11 2751209 2751521 -148032032 - AluY SINE Alu -7 304 1 210 176 0 0 chr11 2752167 2752218 -148031335 + GA-rich Low_complexity Low_complexity 2 52 0 1420 169 36 16 chr11 2752287 2752536 -148031017 + AluJo SINE Alu 42 295 -17 335 325 169 0 chr11 2752538 2752698 -148030855 - L2 LINE L2 -609 2705 2519 217 262 24 36 chr11 2752707 2752791 -148030762 + MER5A DNA MER1_type 107 189 0 2148 122 7 7 chr11 2753103 2753397 -148030156 + AluSq SINE Alu 1 294 -19 432 284 272 11 chr11 2753458 2754084 -148029469 - L2 LINE L2 -244 3028 2243 4854 129 304 86 chr11 2755374 2756767 -148026786 + pTR5 LTR ERV1 743 2438 0 216 315 112 11 chr11 2756878 2756967 -148026586 + MIR3 SINE MIR 57 154 -54 351 308 26 32 chr11 2757017 2757173 -148026380 + L1M4 LINE L1 2398 2552 -3594 444 204 59 35 chr11 2757182 2757382 -148026171 + MLT1J1 LTR MaLR 2 222 -187 262 277 212 65 chr11 2757378 2757562 -148025991 + MLT1J2 LTR MaLR 238 448 -2 * 345 284 79 22 chr11 2757723 2757952 -148025601 + L1M4 LINE L1 2716 2957 -3189 303 28 0 0 chr11 2757955 2757991 -148025562 + (TA)n Simple_repeat Simple_repeat 2 37 0 404 184 20 10 chr11 2758008 2758106 -148025447 - L1M4 LINE L1 -1425 4721 4623 2248 98 0 52 chr11 2759231 2759558 -148023995 - AluSg SINE Alu 0 310 1 324 350 47 14 chr11 2759952 2760166 -148023387 + MIR SINE MIR 32 252 -10 3324 203 21 78 chr11 2760491 2761518 -148022035 - LTR5 LTR ERVK 0 969 1 24 32 0 0 chr11 2761977 2762008 -148021545 + AT_rich Low_complexity Low_complexity 1 31 0 3019 235 22 39 chr11 2762028 2762280 -148021273 - L1MB3 LINE L1 -30 6153 5898 1998 127 35 0 chr11 2762280 2762563 -148020990 - AluSx SINE Alu -17 295 3 3019 235 22 39 chr11 2762563 2762673 -148020880 - L1MB3 LINE L1 -285 5898 5788 1935 135 3 43 chr11 2762673 2762998 -148020555 - AluSx SINE Alu 0 312 1 3019 235 22 39 chr11 2762998 2763992 -148019561 - L1MB3 LINE L1 -395 5788 4818 2249 97 3 3 chr11 2764037 2764337 -148019216 + AluSp SINE Alu 1 300 -13 1217 230 3 65 chr11 2764421 2764620 -148018933 - L1MA4 LINE L1 -175 6125 5960 1705 170 3 3 chr11 2764620 2764903 -148018650 - AluSx SINE Alu -29 283 1 1217 230 3 65 chr11 2764903 2765086 -148018467 - L1MA4 LINE L1 -340 5960 5767 261 259 105 35 chr11 2765124 2765267 -148018286 + HsTC2 DNA Tc2 1631 1783 -115 2029 134 3 31 chr11 2765272 2765592 -148017961 + AluSp SINE Alu 1 311 -2 357 239 97 9 chr11 2765780 2765893 -148017660 + MER5B DNA MER1_type 50 172 -6 633 235 51 0 chr11 2765998 2766194 -148017359 - MER6B DNA MER2_type 0 210 5 1379 128 27 14 chr11 2768087 2768306 -148015247 + AluSq SINE Alu 1 222 -91 744 231 280 3 chr11 2768310 2768639 -148014914 + SATR1 Satellite Satellite 48 467 -3 1889 182 99 24 chr11 2768669 2769476 -148014077 + SATR1 Satellite Satellite 1 866 -93 2773 106 12 2 chr11 2769505 2769929 -148013624 - Tigger1 DNA MER2_type -1404 1014 587 1360 187 120 4 chr11 2769930 2770197 -148013356 + AluJo SINE Alu 2 299 -3 422 195 46 0 chr11 2770252 2770339 -148013214 + Tigger1 DNA MER2_type 501 591 -1827 429 115 33 0 chr11 2770339 2770400 -148013153 - Alu SINE Alu -16 296 234 593 68 0 0 chr11 2770406 2770479 -148013074 + AluSg/x SINE Alu 178 250 -62 1225 177 9 19 chr11 2770479 2770530 -148013023 + AluJo SINE Alu 85 135 -177 2499 86 0 6 chr11 2770530 2770843 -148012710 + AluY SINE Alu 1 311 0 1225 177 9 19 chr11 2770843 2771006 -148012547 + AluJo SINE Alu 135 297 -15 455 220 0 0 chr11 2771007 2771098 -148012455 - Tigger1 DNA MER2_type -1827 591 501 1183 143 37 0 chr11 2771215 2771404 -148012149 - Tigger1 DNA MER2_type -1944 474 279 1202 177 80 17 chr11 2771431 2771668 -148011885 + AluJo SINE Alu 44 295 -17 1460 153 38 11 chr11 2771668 2771929 -148011624 - Tigger1 DNA MER2_type -2127 291 24 303 284 183 24 chr11 2772129 2772298 -148011255 - MIR3 SINE MIR -10 198 3 398 308 17 17 chr11 2772768 2772888 -148010665 + L2 LINE L2 3192 3311 -2 333 230 14 0 chr11 2772910 2772984 -148010569 + MER94 DNA DNA 1 75 -59 9379 93 0 28 chr11 2773084 2774501 -148009052 + HERVH LTR ERV1 1537 2914 -4799 1476 94 5 15 chr11 2774601 2774804 -148008749 + AluY SINE Alu 104 304 -7 1809 154 20 24 chr11 2774891 2775189 -148008364 - AluJb SINE Alu -15 297 1 2190 141 0 10 chr11 2775193 2775505 -148008048 - AluSx SINE Alu -3 309 1 2459 73 0 3 chr11 2775512 2775812 -148007741 - AluY SINE Alu -12 299 1 457 212 66 15 chr11 2775862 2775999 -148007554 + L1ME2 LINE L1 5429 5572 -592 325 202 90 19 chr11 2776000 2776175 -148007378 + L1ME2 LINE L1 5695 5888 -276 1923 155 10 3 chr11 2776547 2776850 -148006703 + AluSx SINE Alu 6 310 -2 245 302 190 17 chr11 2776871 2776987 -148006566 + L3 LINE CR1 1286 1421 -156 2219 93 10 0 chr11 2777304 2777593 -148005960 - AluSx SINE Alu -20 292 1 22 35 0 0 chr11 2777690 2777719 -148005834 + AT_rich Low_complexity Low_complexity 1 29 0 818 171 158 10 chr11 2777858 2778155 -148005398 + Tigger2a DNA MER2_type 1 443 -1 1847 131 0 22 chr11 2778275 2778550 -148005003 + AluSx SINE Alu 1 269 -43 1644 173 10 45 chr11 2778680 2778993 -148004560 - AluJo SINE Alu -8 304 3 367 308 206 40 chr11 2780405 2780730 -148002823 - L2 LINE L2 -2 3311 2933 3861 156 61 20 chr11 2781096 2781121 -148002432 + L1MB7 LINE L1 5142 5165 -1019 2502 88 0 0 chr11 2781121 2781428 -148002125 + AluSp SINE Alu 1 307 -6 3861 156 61 20 chr11 2781428 2782253 -148001300 + L1MB7 LINE L1 5165 6027 -157 2294 116 3 0 chr11 2782253 2782564 -148000989 - AluSx SINE Alu 0 312 1 3861 156 61 20 chr11 2782564 2782642 -148000911 + L1MB7 LINE L1 6027 6100 -84 1419 108 0 5 chr11 2782796 2782981 -148000572 - AluSx SINE Alu -128 184 1 644 236 100 115 chr11 2782983 2783322 -148000231 - L2 LINE L2 -12 3260 2927 2125 135 3 3 chr11 2784271 2784583 -147998970 - AluSx SINE Alu 0 312 1 806 189 0 0 chr11 2784585 2784717 -147998836 - FLAM_A SINE Alu -1 132 1 249 200 71 12 chr11 2785590 2785675 -147997878 - MIR SINE MIR -79 183 94 211 284 28 46 chr11 2785674 2785783 -147997770 + L2 LINE L2 2311 2417 -897 * 205 298 39 10 chr11 2786026 2786130 -147997423 + L2 LINE L2 2888 2994 -278 269 244 39 13 chr11 2786141 2786219 -147997334 + L2 LINE L2 3229 3308 -5 359 313 52 82 chr11 2786264 2786532 -147997021 + MIR SINE MIR 3 262 0 204 331 113 8 chr11 2787283 2787407 -147996146 - MIR3 SINE MIR -31 177 41 2474 62 3 7 chr11 2788060 2788365 -147995188 - AluY SINE Alu -7 304 1 1929 106 8 0 chr11 2788676 2788930 -147994623 + AluSq SINE Alu 52 307 -6 743 157 17 0 chr11 2788930 2789045 -147994508 - AluJo/FLAM SINE Alu -194 118 2 373 255 46 36 chr11 2789109 2789276 -147994277 + MIR SINE MIR 21 183 -62 228 333 50 17 chr11 2789608 2789728 -147993825 + L2 LINE L2 2930 3053 -219 320 273 13 0 chr11 2792148 2792225 -147991328 - MIR3 SINE MIR -5 203 126 187 270 32 16 chr11 2792534 2792597 -147990956 + MIR SINE MIR 108 171 -91 195 364 26 0 chr11 2793903 2793980 -147989573 + MIR SINE MIR 34 112 -150 1111 136 21 21 chr11 2794068 2794085 -147989468 + AluSg/x SINE Alu 120 136 -176 2301 112 16 0 chr11 2794085 2794390 -147989163 + AluSq SINE Alu 1 310 -3 1111 136 21 21 chr11 2794390 2794563 -147988990 + AluSg/x SINE Alu 135 310 -2 331 193 148 34 chr11 2794564 2794652 -147988901 - L1MC4 LINE L1 -1339 6703 6606 419 141 39 0 chr11 2794653 2794731 -147988822 - L1MB7 LINE L1 -84 6100 6020 724 85 11 0 chr11 2794732 2794826 -147988727 + AluJ/FLAM SINE Alu 2 96 -216 862 122 0 43 chr11 2794965 2795074 -147988479 + AluJo/FLAM SINE Alu 1 104 -198 2360 87 0 0 chr11 2795074 2795362 -147988191 - AluSc SINE Alu -20 289 2 862 122 0 43 chr11 2795362 2795391 -147988162 + AluJo/FLAM SINE Alu 104 133 -169 226 255 0 0 chr11 2795392 2795443 -147988110 - MIR SINE MIR -65 143 93 349 228 206 15 chr11 2795987 2796123 -147987430 + MIR SINE MIR 1 162 -100 1643 88 5 0 chr11 2796125 2796329 -147987224 + AluSx SINE Alu 9 213 -99 2014 138 0 10 chr11 2796611 2796908 -147986645 + AluSx SINE Alu 1 294 -18 27 0 0 0 chr11 2796908 2796935 -147986618 + AT_rich Low_complexity Low_complexity 1 27 0 2093 128 0 20 chr11 2797199 2797504 -147986049 - AluSx SINE Alu -13 299 1 806 193 223 0 chr11 2797624 2797826 -147985727 - Tigger2a DNA MER2_type -1 443 197 594 139 37 19 chr11 2797813 2797921 -147985632 - Tigger2a DNA MER2_type -324 110 1 * 1055 164 6 0 chr11 2798165 2798330 -147985223 + AluSg/x SINE Alu 124 289 -20 1646 176 68 56 chr11 2798369 2798496 -147985057 - Charlie1 DNA MER1_type -349 2412 2288 2065 112 30 3 chr11 2798496 2798791 -147984762 - AluSx SINE Alu -9 303 1 1646 176 68 56 chr11 2798791 2798974 -147984579 - Charlie1 DNA MER1_type -473 2288 2093 1939 137 0 11 chr11 2798974 2799287 -147984266 - AluSx SINE Alu 0 312 14 1646 176 68 56 chr11 2799287 2799419 -147984134 - Charlie1 DNA MER1_type -668 2093 1964 2494 87 0 0 chr11 2799419 2799730 -147983823 - AluY SINE Alu 0 311 1 2249 114 3 0 chr11 2799768 2800065 -147983488 - AluSg SINE Alu -12 298 1 1204 141 5 5 chr11 2800065 2800263 -147983290 - AluYa5 SINE Alu -1 310 113 1229 186 97 14 chr11 2801274 2801553 -147982000 + AluJo SINE Alu 5 306 -6 210 37 0 0 chr11 2801675 2801702 -147981851 + (A)n Simple_repeat Simple_repeat 1 27 0 198 0 0 0 chr11 2802889 2802911 -147980642 + (GAGAA)n Simple_repeat Simple_repeat 3 24 0 227 204 0 0 chr11 2803393 2803437 -147980116 + L2 LINE L2 3270 3313 0 344 98 33 0 chr11 2803515 2803576 -147979977 + (TTTAA)n Simple_repeat Simple_repeat 4 66 0 2372 88 0 7 chr11 2803586 2803892 -147979661 + AluSg SINE Alu 1 304 -6 2291 112 0 6 chr11 2803908 2804222 -147979331 + AluSq SINE Alu 2 313 0 775 216 6 28 chr11 2804227 2804403 -147979150 + MIR SINE MIR 91 262 0 2616 50 0 0 chr11 2804417 2804717 -147978836 + AluY SINE Alu 1 300 -11 2051 109 3 21 chr11 2804721 2805034 -147978519 + AluSx SINE Alu 3 310 0 228 163 0 0 chr11 2805103 2805146 -147978407 + T-rich Low_complexity Low_complexity 1 43 0 284 299 103 8 chr11 2805737 2805854 -147977699 + MIR SINE MIR 18 145 -63 2502 64 3 13 chr11 2805870 2806049 -147977504 - AluY SINE Alu 0 311 135 2378 91 7 0 chr11 2806049 2806347 -147977206 - AluSx SINE Alu -12 300 1 2502 64 3 13 chr11 2806347 2806481 -147977072 - AluY SINE Alu -176 135 1 2144 137 0 0 chr11 2806482 2806782 -147976771 - AluSx SINE Alu -12 300 1 2090 140 0 0 chr11 2806852 2807145 -147976408 - AluSx SINE Alu -19 293 1 184 304 109 0 chr11 2807498 2807590 -147975963 - MIR SINE MIR -90 118 17 2302 112 0 6 chr11 2807741 2808055 -147975498 - AluSx SINE Alu 0 312 1 226 221 233 0 chr11 2808224 2808310 -147975243 - MIR SINE MIR -1 261 156 1240 172 9 9 chr11 2808310 2808531 -147975022 - AluSg/x SINE Alu -7 303 83 680 384 0 0 chr11 2808631 2808782 -147974771 + C-rich Low_complexity Low_complexity 1 151 0 455 237 12 12 chr11 2808821 2808990 -147974563 + C-rich Low_complexity Low_complexity 1 169 0 2403 64 14 0 chr11 2809194 2809490 -147974063 - AluSq SINE Alu -13 300 1 238 238 155 0 chr11 2809490 2809574 -147973979 + MIR SINE MIR 163 259 -3 21 0 0 0 chr11 2810422 2810443 -147973110 + GC_rich Low_complexity Low_complexity 1 21 0 844 247 22 35 chr11 2810823 2811050 -147972503 + MIR SINE MIR 33 256 -6 447 199 69 46 chr11 2811197 2811328 -147972225 - MIR3 SINE MIR -14 194 61 187 259 52 35 chr11 2812014 2812072 -147971481 + MIR SINE MIR 109 167 -95 1538 192 17 10 chr11 2814164 2814456 -147969097 - AluJb SINE Alu -18 294 1 1737 133 4 12 chr11 2814631 2814887 -147968666 - AluSq SINE Alu -59 254 1 2176 85 7 29 chr11 2815201 2815507 -147968046 + AluSx SINE Alu 1 299 -13 2355 93 0 3 chr11 2815516 2815818 -147967735 + AluSx SINE Alu 5 305 -7 206 171 0 105 chr11 2816381 2816457 -147967096 + C-rich Low_complexity Low_complexity 5 72 0 216 171 0 24 chr11 2816619 2816660 -147966893 + (CGG)n Simple_repeat Simple_repeat 3 42 0 251 197 0 145 chr11 2817334 2817410 -147966143 - MIR3 SINE MIR -32 176 112 227 125 0 62 chr11 2818511 2818559 -147964994 + L2 LINE L2 3224 3268 -4 1949 146 3 19 chr11 2818676 2818984 -147964569 - AluJb SINE Alu -9 303 1 1452 224 14 0 chr11 2819230 2819516 -147964037 + AluJb SINE Alu 1 290 -22 2079 119 7 19 chr11 2819521 2819831 -147963722 + AluSx SINE Alu 6 311 -1 675 257 39 6 chr11 2819935 2820114 -147963439 - MER20 DNA MER1_type -1 218 34 2135 109 7 0 chr11 2820150 2820455 -147963098 - AluSq SINE Alu 0 307 1 809 119 9 0 chr11 2820559 2820668 -147962885 + AluSg SINE Alu 1 110 -200 269 262 0 0 chr11 2820817 2820878 -147962675 - L1MC5 LINE L1 -71 7890 7830 1557 196 0 50 chr11 2820973 2821150 -147962403 - AluJb SINE Alu -6 306 151 1768 123 0 0 chr11 2821150 2821385 -147962168 - AluSx SINE Alu -77 235 1 1557 196 0 50 chr11 2821385 2821529 -147962024 - AluJb SINE Alu -161 151 1 2117 100 0 39 chr11 2821611 2821921 -147961632 - AluY SINE Alu 0 311 14 344 266 69 58 chr11 2822001 2822174 -147961379 + MER5B DNA MER1_type 3 177 -1 1095 86 0 14 chr11 2822198 2822337 -147961216 - AluSq/x SINE Alu -176 137 1 2401 77 3 0 chr11 2822525 2822823 -147960730 - AluSp SINE Alu -14 299 1 1487 190 14 7 chr11 2822837 2823132 -147960421 - AluJb SINE Alu -15 297 1 1501 115 115 63 chr11 2823383 2823670 -147959883 + AluSg SINE Alu 1 302 -8 21 0 0 0 chr11 2824421 2824442 -147959111 + AT_rich Low_complexity Low_complexity 1 21 0 225 0 0 0 chr11 2824721 2824746 -147958807 + (T)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr11 2824898 2824919 -147958634 + AT_rich Low_complexity Low_complexity 1 21 0 326 302 63 57 chr11 2825788 2825947 -147957606 - MER117 DNA MER1_type 0 197 38 2520 74 0 3 chr11 2826021 2826333 -147957220 - AluY SINE Alu 0 311 1 2444 82 0 0 chr11 2826605 2826908 -147956645 - AluSg SINE Alu -6 304 2 2319 81 0 29 chr11 2827459 2827768 -147955785 + AluY SINE Alu 1 300 -11 2089 136 0 10 chr11 2827829 2828131 -147955422 + AluJb SINE Alu 4 302 -10 2216 114 0 19 chr11 2828688 2829005 -147954548 - AluSq SINE Alu -2 311 1 1999 100 64 0 chr11 2829529 2829810 -147953743 - AluSx SINE Alu -13 299 1 2211 102 0 43 chr11 2829812 2830135 -147953418 - AluSg SINE Alu -1 309 1 1474 184 60 14 chr11 2830851 2831133 -147952420 - AluJb SINE Alu -17 295 1 1020 159 6 0 chr11 2831246 2831416 -147952137 - AluSg/x SINE Alu 0 312 142 1842 152 14 0 chr11 2831425 2831715 -147951838 - AluSg SINE Alu -14 296 3 316 155 175 31 chr11 2831717 2831814 -147951739 - L1ME3A LINE L1 -260 5910 5800 190 0 32 32 chr11 2831989 2832020 -147951533 + (TTTTTA)n Simple_repeat Simple_repeat 1 31 0 428 253 42 93 chr11 2832507 2832819 -147950734 - L2 LINE L2 -91 3222 2927 571 267 179 35 chr11 2832865 2833090 -147950463 - L2 LINE L2 -493 2821 2535 2107 150 7 0 chr11 2833090 2833397 -147950156 + AluSx SINE Alu 1 309 -3 571 267 179 35 chr11 2833397 2833489 -147950064 - L2 LINE L2 -779 2535 2458 258 32 0 0 chr11 2833674 2833705 -147949848 + (CA)n Simple_repeat Simple_repeat 2 32 0 243 0 0 0 chr11 2833739 2833766 -147949787 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 1049 174 117 68 chr11 2833779 2833911 -147949642 - AluJb SINE Alu -35 277 153 1842 117 80 4 chr11 2833911 2834185 -147949368 - AluSq SINE Alu -13 300 6 1049 174 117 68 chr11 2834185 2834196 -147949357 - AluJb SINE Alu -159 153 144 2104 119 3 7 chr11 2834196 2834490 -147949063 - AluSg1 SINE Alu -16 293 1 1049 174 117 68 chr11 2834490 2834609 -147948944 - AluJb SINE Alu -168 144 1 816 151 0 0 chr11 2834655 2834774 -147948779 - FRAM SINE Alu -8 168 50 1434 196 3 35 chr11 2834799 2835110 -147948443 - AluJo SINE Alu -11 301 1 222 128 0 0 chr11 2835461 2835500 -147948053 + (T)n Simple_repeat Simple_repeat 1 39 0 2453 77 0 0 chr11 2835815 2836113 -147947440 - AluY SINE Alu -13 298 1 202 320 16 41 chr11 2836113 2836226 -147947327 + MIR3 SINE MIR 22 133 -75 1868 143 37 14 chr11 2836632 2836926 -147946627 + AluSx SINE Alu 1 301 -11 694 214 81 39 chr11 2836949 2836992 -147946561 + L1MB7 LINE L1 3741 3781 -2365 2127 120 7 0 chr11 2836992 2837293 -147946260 + AluSg SINE Alu 1 303 -7 694 214 81 39 chr11 2837293 2837483 -147946070 + L1MB7 LINE L1 3781 3984 -2162 * 3453 175 113 46 chr11 2837476 2837535 -147946018 + L1MB7 LINE L1 4663 4717 -1467 2187 126 3 3 chr11 2837535 2837845 -147945708 - AluSx SINE Alu -2 310 1 3453 175 113 46 chr11 2837845 2837859 -147945694 + L1MB7 LINE L1 4717 4729 -1455 1687 173 10 10 chr11 2837859 2838160 -147945393 - AluJb SINE Alu -11 301 1 3453 175 113 46 chr11 2838160 2838432 -147945121 + L1MB7 LINE L1 4729 4981 -1203 2209 122 0 7 chr11 2838432 2838735 -147944818 - AluSx SINE Alu -11 301 1 3453 175 113 46 chr11 2838735 2838888 -147944665 + L1MB7 LINE L1 4981 5122 -1062 871 216 6 6 chr11 2838888 2839059 -147944494 + FAM SINE Alu 1 171 -4 3453 175 113 46 chr11 2839059 2839375 -147944178 + L1MB7 LINE L1 5122 5415 -769 2210 99 10 3 chr11 2839375 2839669 -147943884 + AluSg SINE Alu 1 296 -14 3453 175 113 46 chr11 2839669 2840275 -147943278 + L1MB7 LINE L1 5415 6184 0 1830 122 70 0 chr11 2840415 2840685 -147942868 + AluSx SINE Alu 1 289 -23 243 301 192 13 chr11 2840963 2841119 -147942434 + MIR SINE MIR 49 232 -30 2251 97 0 39 chr11 2841832 2842140 -147941413 + AluSq SINE Alu 1 296 -17 1777 139 18 14 chr11 2842279 2842456 -147941097 - AluSx SINE Alu 0 313 138 254 0 83 0 chr11 2842456 2842492 -147941061 + T-rich Low_complexity Low_complexity 2 40 0 2171 74 7 11 chr11 2842492 2842776 -147940777 - AluSg SINE Alu -27 283 1 1777 139 18 14 chr11 2842776 2842909 -147940644 - AluSx SINE Alu -174 139 1 1451 200 79 10 chr11 2842922 2843257 -147940296 - L1MB7 LINE L1 -7 6177 5817 200 106 15 61 chr11 2844076 2844142 -147939411 + (TTTTTG)n Simple_repeat Simple_repeat 1 63 0 394 148 0 0 chr11 2844164 2844218 -147939335 - Alu SINE Alu -248 54 1 832 220 36 0 chr11 2844246 2844414 -147939139 + FAM SINE Alu 1 174 -1 236 128 0 0 chr11 2844515 2844554 -147938999 - L1ME4a LINE L1 -23 6098 6060 2005 115 14 21 chr11 2844630 2844939 -147938614 - AluSx SINE Alu 0 307 1 287 61 41 0 chr11 2845431 2845480 -147938073 + (TCTCTG)n Simple_repeat Simple_repeat 2 52 0 1931 113 0 0 chr11 2845491 2845747 -147937806 - AluSq SINE Alu -53 260 5 2304 92 0 13 chr11 2845903 2846218 -147937335 - AluY SINE Alu 0 311 1 718 201 13 13 chr11 2846220 2846369 -147937184 - MER106A DNA MER1_type -55 181 33 2390 100 0 0 chr11 2846436 2846736 -147936817 - AluSq SINE Alu -12 301 2 212 0 36 0 chr11 2846738 2846766 -147936787 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1868 138 22 0 chr11 2846771 2847047 -147936506 - AluJb SINE Alu -30 282 1 1821 105 0 0 chr11 2847983 2848211 -147935342 + AluSx SINE Alu 1 228 -84 2156 113 0 3 chr11 2848731 2849023 -147934530 - AluSg1 SINE Alu -18 291 1 1856 141 3 36 chr11 2849225 2849531 -147934022 - AluSx SINE Alu -14 298 3 2024 154 0 0 chr11 2849742 2850048 -147933505 - AluSx SINE Alu -6 306 1 2092 131 13 0 chr11 2850255 2850561 -147932992 - AluSg SINE Alu 0 310 1 1974 121 3 70 chr11 2850742 2851073 -147932480 - AluSx SINE Alu -3 309 1 315 0 0 0 chr11 2852152 2852187 -147931366 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2012 132 4 0 chr11 2852189 2852470 -147931083 - AluSx SINE Alu -30 282 1 1740 117 120 0 chr11 2852544 2852810 -147930743 - AluSg SINE Alu -2 298 1 1590 199 0 0 chr11 2852838 2853129 -147930424 - AluJo SINE Alu -21 291 1 2277 94 3 0 chr11 2853331 2853629 -147929924 - AluSp SINE Alu -14 299 1 467 263 116 13 chr11 2853664 2853770 -147929783 - MER112 DNA MER1_type -4 256 162 1342 221 13 39 chr11 2853770 2854082 -147929471 + AluJo SINE Alu 1 304 -8 467 263 116 13 chr11 2854082 2854207 -147929346 - MER112 DNA MER1_type -98 162 1 1119 191 109 4 chr11 2854310 2854540 -147929013 + AluJb SINE Alu 1 254 -58 286 287 151 12 chr11 2854610 2854861 -147928692 - L1ME LINE L1 -335 5786 5501 1917 107 21 11 chr11 2855063 2855363 -147928190 - AluSq SINE Alu 0 303 1 2850 19 0 0 chr11 2855369 2855679 -147927874 - AluYb8 SINE Alu -8 310 1 713 104 0 0 chr11 2856047 2856143 -147927410 - AluSq/x SINE Alu -177 136 41 1601 119 171 4 chr11 2856171 2856422 -147927131 - AluSg1 SINE Alu -16 293 1 244 273 64 55 chr11 2857897 2858007 -147925546 - L2 LINE L2 -2 3270 3160 216 289 106 10 chr11 2858032 2858136 -147925417 + MIR SINE MIR 93 206 -56 1919 138 0 0 chr11 2858283 2858558 -147924995 - AluSx SINE Alu -37 275 1 1114 153 35 83 chr11 2858573 2858694 -147924859 - MER33 DNA MER1_type -2275 310 185 2382 95 3 0 chr11 2858694 2859000 -147924553 - AluSg SINE Alu -3 307 1 1114 153 35 83 chr11 2859000 2859191 -147924362 - MER33 DNA MER1_type -2400 185 13 191 247 82 0 chr11 2859255 2859328 -147924225 + L2 LINE L2 3019 3097 -175 738 183 15 8 chr11 2859577 2859708 -147923845 - FLAM_A SINE Alu -1 132 1 2402 105 0 0 chr11 2860156 2860462 -147923091 + AluSc SINE Alu 1 306 -3 238 287 129 0 chr11 2860505 2860606 -147922947 + MIR3 SINE MIR 85 198 -10 207 262 214 0 chr11 2860717 2860820 -147922733 + L2 LINE L2 3134 3258 -14 641 246 0 0 chr11 2861428 2861554 -147921999 + FLAM_A SINE Alu 1 126 -7 209 290 123 22 chr11 2861587 2861623 -147921930 + MIR SINE MIR 106 137 -125 1798 186 3 3 chr11 2861623 2861934 -147921619 + AluJo SINE Alu 1 311 -1 209 290 123 22 chr11 2861934 2862035 -147921518 + MIR SINE MIR 137 257 -5 2101 97 38 3 chr11 2862441 2862729 -147920824 - AluSx SINE Alu -14 298 1 2035 138 7 3 chr11 2862729 2863033 -147920520 - AluSq SINE Alu -8 305 1 2401 100 3 0 chr11 2863185 2863496 -147920057 - AluSx SINE Alu 0 312 1 221 245 0 0 chr11 2863792 2863841 -147919712 + MIR SINE MIR 59 107 -155 324 163 128 0 chr11 2863880 2863966 -147919587 - MIR SINE MIR -54 208 112 2008 126 3 21 chr11 2863968 2864253 -147919300 + AluSx SINE Alu 1 280 -32 188 33 0 33 chr11 2864266 2864296 -147919257 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 546 211 0 24 chr11 2864402 2864525 -147919028 + L2 LINE L2 3192 3311 -2 592 224 195 9 chr11 2864884 2865094 -147918459 - MIR SINE MIR 0 262 14 363 23 0 0 chr11 2865224 2865268 -147918285 + (CA)n Simple_repeat Simple_repeat 2 45 0 267 336 104 8 chr11 2865714 2865839 -147917714 - L2 LINE L2 0 3272 3136 968 179 0 6 chr11 2865856 2866011 -147917542 + FRAM SINE Alu 1 151 -161 244 0 0 0 chr11 2866011 2866038 -147917515 + (TAAA)n Simple_repeat Simple_repeat 2 108 0 677 173 0 0 chr11 2866067 2866171 -147917382 + AluJb SINE Alu 196 299 -13 272 116 23 0 chr11 2866408 2866451 -147917102 + MIR SINE MIR 102 145 -63 1206 157 114 0 chr11 2866454 2866690 -147916863 - Tigger7 DNA MER2_type -1 2486 2224 2301 91 10 0 chr11 2866696 2866992 -147916561 - AluSx SINE Alu -10 302 4 209 250 0 31 chr11 2867066 2867130 -147916423 + MIR SINE MIR 160 221 -41 1909 147 7 3 chr11 2867302 2867588 -147915965 - AluJb SINE Alu -12 300 14 319 312 96 25 chr11 2867701 2867858 -147915695 - MIR3 SINE MIR -14 194 27 2256 101 3 3 chr11 2867878 2868186 -147915367 - AluSx SINE Alu -4 308 1 2578 68 3 0 chr11 2868522 2868829 -147914724 - AluSp SINE Alu -5 308 1 579 204 74 0 chr11 2869065 2869173 -147914380 + FLAM_A SINE Alu 1 116 -17 23 33 0 0 chr11 2869631 2869661 -147913892 + AT_rich Low_complexity Low_complexity 1 30 0 376 273 136 8 chr11 2869692 2869824 -147913729 + MIR SINE MIR 14 162 -100 366 325 49 18 chr11 2869824 2869987 -147913566 - MIR SINE MIR -7 255 88 240 238 81 56 chr11 2870493 2870653 -147912900 - HAL1 LINE L1 -108 2399 2236 2165 123 0 23 chr11 2870736 2871045 -147912508 - AluSg SINE Alu -8 302 1 226 172 23 58 chr11 2871049 2871136 -147912417 + MER113 DNA MER1_type? 3 86 -435 1557 96 0 5 chr11 2871150 2871349 -147912204 - AluY SINE Alu -10 301 104 258 156 0 0 chr11 2871663 2871708 -147911845 + CT-rich Low_complexity Low_complexity 1 45 0 1902 136 0 7 chr11 2871708 2871987 -147911566 - AluSq SINE Alu -36 277 1 336 24 0 0 chr11 2872394 2872435 -147911118 + (CA)n Simple_repeat Simple_repeat 1 41 0 207 69 0 0 chr11 2872541 2872570 -147910983 + (T)n Simple_repeat Simple_repeat 1 29 0 502 187 19 0 chr11 2872875 2872982 -147910571 - FLAM_A SINE Alu -1 141 33 1535 206 18 4 chr11 2873342 2873618 -147909935 + AluJb SINE Alu 1 280 -32 240 35 0 0 chr11 2873620 2873649 -147909904 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 2300 102 0 0 chr11 2874225 2874565 -147908988 - AluSq SINE Alu 0 340 1 275 154 0 0 chr11 2874734 2874786 -147908767 + L1M4 LINE L1 3416 3467 -2679 190 130 0 43 chr11 2874789 2874835 -147908718 + (TTTCC)n Simple_repeat Simple_repeat 5 48 0 2245 129 3 0 chr11 2874839 2875149 -147908404 - AluSq SINE Alu -2 311 1 2145 248 147 11 chr11 2875158 2876104 -147907449 + L1M4 LINE L1 3474 4548 -1598 2083 111 10 0 chr11 2876105 2876394 -147907159 + AluSx SINE Alu 1 292 -20 240 312 185 25 chr11 2876670 2876827 -147906726 - L3 LINE CR1 -110 1467 1286 1887 161 10 3 chr11 2876845 2877155 -147906398 - AluSx SINE Alu 0 312 1 180 0 0 0 chr11 2877544 2877564 -147905989 + (T)n Simple_repeat Simple_repeat 1 20 0 2300 98 0 7 chr11 2878002 2878308 -147905245 - AluY SINE Alu -7 304 1 180 0 0 0 chr11 2878310 2878330 -147905223 + (T)n Simple_repeat Simple_repeat 1 20 0 225 239 62 54 chr11 2878949 2879006 -147904547 - L1ME LINE L1 -293 5828 5773 1643 130 115 4 chr11 2879006 2879276 -147904277 - AluSx SINE Alu -12 300 1 225 239 62 54 chr11 2879276 2879348 -147904205 - L1ME LINE L1 -348 5773 5698 1430 182 4 30 chr11 2879420 2879552 -147904001 + AluJb SINE Alu 1 124 -188 207 0 0 0 chr11 2879552 2879575 -147903978 + (CA)n Simple_repeat Simple_repeat 2 24 0 1430 182 4 30 chr11 2879575 2879711 -147903842 + AluJb SINE Alu 124 262 -50 198 103 0 0 chr11 2879789 2879818 -147903735 + (CA)n Simple_repeat Simple_repeat 2 30 0 378 0 0 0 chr11 2879861 2879903 -147903650 + (CA)n Simple_repeat Simple_repeat 2 43 0 365 276 35 55 chr11 2879973 2880172 -147903381 - L1ME LINE L1 -758 5484 5290 32 43 0 0 chr11 2880280 2880326 -147903227 + AT_rich Low_complexity Low_complexity 1 46 0 616 148 157 0 chr11 2880752 2880867 -147902686 - FLAM_C SINE Alu 0 133 1 314 322 49 0 chr11 2880868 2880974 -147902579 - MIR SINE MIR -63 145 34 319 308 149 34 chr11 2881031 2881239 -147902314 + MIR SINE MIR 10 241 -21 2227 101 10 0 chr11 2881320 2881617 -147901936 + AluSq SINE Alu 2 301 -12 205 303 119 28 chr11 2881747 2881856 -147901697 - L2 LINE L2 -30 3283 3165 1530 186 65 48 chr11 2881902 2882044 -147901509 + L1MB7 LINE L1 5746 5884 -300 2111 134 0 0 chr11 2882044 2882342 -147901211 + AluSq SINE Alu 5 302 -11 1530 186 65 48 chr11 2882342 2882613 -147900940 + L1MB7 LINE L1 5884 6166 -18 1115 114 0 6 chr11 2883396 2883554 -147899999 - AluSg/x SINE Alu -22 290 134 1281 138 51 0 chr11 2883689 2883906 -147899647 + MER46A DNA MER2_type 9 236 0 26 64 0 0 chr11 2884303 2884350 -147899203 + AT_rich Low_complexity Low_complexity 1 47 0 2120 127 10 0 chr11 2884367 2884667 -147898886 - AluSx SINE Alu -9 303 1 571 174 9 28 chr11 2884829 2884938 -147898615 - AluJb SINE Alu -11 301 195 2019 124 3 26 chr11 2884988 2885294 -147898259 + AluSx SINE Alu 1 299 -13 2008 127 38 0 chr11 2885401 2885692 -147897861 - AluSx SINE Alu -10 302 1 1603 154 46 39 chr11 2885910 2886216 -147897337 - AluJo SINE Alu -4 308 1 3462 259 59 18 chr11 2886229 2886885 -147896668 + L2 LINE L2 1950 2672 -641 2259 99 0 13 chr11 2886885 2887198 -147896355 - AluY SINE Alu -2 309 1 3462 259 59 18 chr11 2887198 2887609 -147895944 + L2 LINE L2 2672 3065 -248 1676 188 10 0 chr11 2887617 2887909 -147895644 - AluJo SINE Alu -17 295 1 661 195 9 0 chr11 2887952 2888065 -147895488 - FLAM_C SINE Alu -24 119 6 342 296 8 8 chr11 2888109 2888241 -147895312 - L1MC4 LINE L1 -1013 7029 6898 321 207 94 47 chr11 2888345 2888472 -147895081 - FLAM_A SINE Alu -2 131 15 510 280 50 70 chr11 2888472 2888590 -147894963 - L1M4 LINE L1 -2458 3688 3569 1323 177 106 39 chr11 2888590 2888873 -147894680 + AluJo SINE Alu 3 304 -8 510 280 50 70 chr11 2888873 2889329 -147894224 - L1M4 LINE L1 -2577 3569 3125 374 228 44 9 chr11 2889489 2889603 -147893950 - L1M4 LINE L1 -3376 2770 2653 1032 167 36 50 chr11 2889619 2889840 -147893713 + AluJb SINE Alu 82 299 -13 1878 130 41 3 chr11 2890849 2891141 -147892412 - AluSx SINE Alu -9 303 1 2050 132 6 19 chr11 2891190 2891501 -147892052 - AluSq SINE Alu -6 307 1 451 263 93 45 chr11 2891513 2891760 -147891793 - L1ME4a LINE L1 -175 5946 5688 268 79 0 0 chr11 2891764 2891802 -147891751 + MER4E LTR ERV1 654 691 -75 27 0 0 0 chr11 2891885 2891912 -147891641 + AT_rich Low_complexity Low_complexity 1 27 0 383 267 23 46 chr11 2892012 2892143 -147891410 + MIR SINE MIR 134 261 -1 1550 169 59 0 chr11 2892809 2893106 -147890447 - AluJb SINE Alu 0 313 1 21 0 0 0 chr11 2893171 2893192 -147890361 + AT_rich Low_complexity Low_complexity 1 21 0 1576 177 53 14 chr11 2893251 2893534 -147890019 + AluJo SINE Alu 3 296 -16 2300 102 0 0 chr11 2893636 2893976 -147889577 - AluSq SINE Alu 0 340 1 275 154 0 0 chr11 2894145 2894197 -147889356 + L1MB3 LINE L1 3416 3467 -2679 190 130 0 43 chr11 2894200 2894246 -147889307 + (TTTCC)n Simple_repeat Simple_repeat 5 48 0 2245 129 3 0 chr11 2894250 2894560 -147888993 - AluSq SINE Alu -2 311 1 4234 191 86 89 chr11 2894569 2895516 -147888037 + L1MB3 LINE L1 3474 4423 -1760 1901 118 35 14 chr11 2895516 2895803 -147887750 + AluSx SINE Alu 1 293 -19 4234 191 86 89 chr11 2895803 2896101 -147887452 + L1MB3 LINE L1 4423 4720 -1463 1697 183 3 10 chr11 2896101 2896390 -147887163 - AluJb SINE Alu -25 287 1 4234 191 86 89 chr11 2896390 2896911 -147886642 + L1MB3 LINE L1 4720 5241 -942 1279 164 48 106 chr11 2896911 2897223 -147886330 + AluJo SINE Alu 5 298 -14 4234 191 86 89 chr11 2897223 2897381 -147886172 + L1MB3 LINE L1 5241 5398 -785 1777 146 43 0 chr11 2897381 2897661 -147885892 + AluSg SINE Alu 1 292 -18 4234 191 86 89 chr11 2897661 2897975 -147885578 + L1MB3 LINE L1 5398 5796 -387 447 104 15 0 chr11 2897975 2898042 -147885511 + U6 snRNA snRNA 40 107 0 4234 191 86 89 chr11 2898042 2898256 -147885297 + L1MB3 LINE L1 5796 6009 -174 1634 191 0 4 chr11 2899101 2899378 -147884175 - AluJo SINE Alu -36 276 1 28 48 0 0 chr11 2901203 2901245 -147882308 + AT_rich Low_complexity Low_complexity 1 42 0 1540 164 34 27 chr11 2901563 2901856 -147881697 - AluSx SINE Alu -17 295 1 252 330 0 31 chr11 2902641 2902738 -147880815 - MER5B DNA MER1_type -81 97 4 1328 69 0 6 chr11 2902834 2903009 -147880544 - L1PA3 LINE L1 -8 6147 5974 1098 192 14 23 chr11 2903165 2903384 -147880169 - AluJo SINE Alu -95 217 1 855 138 32 0 chr11 2903422 2903545 -147880008 - FLAM_C SINE Alu -16 127 1 190 369 0 15 chr11 2904547 2904612 -147878941 - L2 LINE L2 -20 3252 3189 2131 136 7 3 chr11 2904686 2904987 -147878566 - AluSx SINE Alu -10 302 1 1241 185 82 55 chr11 2905058 2905350 -147878203 - AluSx SINE Alu 0 312 13 2416 71 0 0 chr11 2905490 2905786 -147877767 + AluY SINE Alu 1 296 -15 1605 228 49 23 chr11 2905788 2906261 -147877292 - Charlie1a DNA MER1_type -969 486 2 1847 121 11 21 chr11 2906602 2906915 -147876638 + AluSc SINE Alu 1 310 0 1121 154 8 9 chr11 2906916 2907183 -147876370 + AluJb SINE Alu 1 312 0 280 280 112 0 chr11 2907535 2907642 -147875911 - MIR SINE MIR -79 183 65 22 35 0 0 chr11 2907643 2907672 -147875881 + AT_rich Low_complexity Low_complexity 1 29 0 2042 125 3 7 chr11 2907716 2908021 -147875532 - AluSp SINE Alu -9 304 1 180 0 0 0 chr11 2908070 2908090 -147875463 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1851 103 52 7 chr11 2908093 2908364 -147875189 - AluSq SINE Alu -30 283 1 2308 86 0 0 chr11 2908681 2908973 -147874580 - AluSc SINE Alu -17 292 1 1942 125 35 3 chr11 2909096 2909385 -147874168 - AluSx SINE Alu -14 298 1 608 172 114 41 chr11 2910490 2910698 -147872855 + MIR SINE MIR 42 252 -10 1979 163 0 0 chr11 2910907 2911207 -147872346 - AluSx SINE Alu -12 300 1 463 274 48 58 chr11 2911261 2911469 -147872084 - MER102a DNA MER1_type 0 330 125 2294 103 0 3 chr11 2911517 2911829 -147871724 - AluSx SINE Alu -1 311 1 230 382 18 0 chr11 2911831 2911941 -147871612 - MER5B DNA MER1_type -17 161 50 885 223 46 65 chr11 2911957 2912217 -147871336 - AluJo SINE Alu -57 255 1 187 200 100 0 chr11 2912226 2912276 -147871277 - MER5B DNA MER1_type -123 55 1 37 0 0 0 chr11 2912766 2912803 -147870750 + AT_rich Low_complexity Low_complexity 1 37 0 2165 137 3 3 chr11 2912961 2913267 -147870286 - AluSp SINE Alu -7 306 1 1552 118 111 80 chr11 2913331 2913620 -147869933 - AluSx SINE Alu -14 298 1 1825 127 0 68 chr11 2914894 2915218 -147868335 - AluSx SINE Alu -10 302 1 272 336 73 0 chr11 2915477 2915587 -147867966 - L2 LINE L2 -10 3262 3145 1481 196 17 24 chr11 2916065 2916361 -147867192 - AluJo SINE Alu -17 295 2 747 182 0 0 chr11 2917098 2917219 -147866334 + FLAM_C SINE Alu 1 121 -22 29 28 0 0 chr11 2917234 2917270 -147866283 + AT_rich Low_complexity Low_complexity 1 36 0 507 262 81 62 chr11 2917421 2917570 -147865983 + MIR SINE MIR 19 175 -87 2287 104 3 7 chr11 2917570 2917869 -147865684 + AluSg SINE Alu 1 298 -12 507 262 81 62 chr11 2917869 2917929 -147865624 + MIR SINE MIR 175 232 -30 216 0 0 0 chr11 2918716 2918740 -147864813 + (GA)n Simple_repeat Simple_repeat 2 25 0 * 324 0 0 0 chr11 2918739 2918775 -147864778 + (TG)n Simple_repeat Simple_repeat 2 37 0 960 188 218 4 chr11 2918813 2919047 -147864506 - AluSg1 SINE Alu -25 284 1 2288 89 0 7 chr11 2919090 2919382 -147864171 + AluY SINE Alu 22 311 0 2132 110 45 7 chr11 2919507 2919798 -147863755 + AluSx SINE Alu 1 302 -10 286 47 0 0 chr11 2920766 2920809 -147862744 - AluSc SINE Alu 0 308 266 1389 94 0 0 chr11 2920810 2920981 -147862572 - AluSc SINE Alu -138 171 1 552 314 123 35 chr11 2922746 2923151 -147860402 + L2 LINE L2 2832 3272 0 339 270 75 63 chr11 2923349 2923400 -147860153 - Charlie8 DNA MER1_type -2231 186 137 1786 167 13 31 chr11 2923400 2923718 -147859835 + AluJo SINE Alu 1 312 0 339 270 75 63 chr11 2923718 2923825 -147859728 - Charlie8 DNA MER1_type -2280 137 26 2653 155 65 6 chr11 2924129 2924639 -147858914 + L1MB2 LINE L1 5591 6130 -41 2467 86 0 6 chr11 2924640 2924953 -147858600 + AluY SINE Alu 1 311 0 2148 109 44 7 chr11 2925078 2925371 -147858182 + AluSx SINE Alu 1 304 -8 286 47 0 0 chr11 2926338 2926381 -147857172 - AluSc SINE Alu 0 301 259 1411 88 0 0 chr11 2926382 2926553 -147857000 - AluSc SINE Alu -138 171 1 24 32 0 0 chr11 2927701 2927732 -147855821 + AT_rich Low_complexity Low_complexity 1 31 0 2493 80 10 0 chr11 2928168 2928470 -147855083 - AluSq SINE Alu -8 305 1 371 278 143 79 chr11 2928509 2928865 -147854688 - L1ME4a LINE L1 0 6121 5743 2093 119 3 34 chr11 2929071 2929391 -147854162 - AluSq SINE Alu -3 310 1 875 135 14 21 chr11 2929648 2929789 -147853764 - FLAM_C SINE Alu -3 140 1 2213 119 6 3 chr11 2930082 2930393 -147853160 - AluSx SINE Alu 0 312 1 1948 158 0 0 chr11 2930419 2930698 -147852855 - AluSx SINE Alu -31 281 3 2055 147 3 0 chr11 2930710 2931010 -147852543 - AluSq SINE Alu -12 301 1 994 193 0 0 chr11 2931750 2931911 -147851642 - AluJ SINE Alu -23 289 129 658 202 0 17 chr11 2932029 2932148 -147851405 - AluJ SINE Alu -190 122 6 2400 100 0 0 chr11 2932160 2932461 -147851092 - AluY SINE Alu -10 301 1 2251 114 7 0 chr11 2932522 2932830 -147850723 - AluSq SINE Alu -3 310 1 1087 83 0 0 chr11 2932839 2932972 -147850581 - AluSq/x SINE Alu -179 133 1 608 228 0 0 chr11 2933230 2933344 -147850209 + FLAM_C SINE Alu 3 116 -27 1835 98 117 4 chr11 2934308 2934573 -147848980 - AluSg1 SINE Alu -12 297 3 822 155 101 54 chr11 2934576 2934744 -147848809 - FRAM SINE Alu -6 170 1 591 101 20 20 chr11 2934775 2934874 -147848679 - U13 snRNA snRNA 0 104 6 647 206 30 0 chr11 2934882 2935013 -147848540 - FLAM_C SINE Alu -8 135 1 2238 123 0 0 chr11 2935067 2935367 -147848186 + AluSx SINE Alu 1 300 -12 294 267 78 35 chr11 2935792 2935908 -147847645 - L1ME1 LINE L1 -46 6120 6000 1934 109 0 0 chr11 2936020 2936267 -147847286 - AluSx SINE Alu -65 247 1 491 145 46 2 chr11 2936271 2936301 -147847252 - L1ME1 LINE L1 -740 5430 5403 670 117 31 92 chr11 2936301 2936344 -147847209 - L1MB3 LINE L1 -3 6180 6136 2294 73 29 35 chr11 2936344 2936657 -147846896 - AluY SINE Alu 0 311 1 670 117 31 92 chr11 2936657 2936776 -147846777 - L1MB3 LINE L1 -47 6136 6028 491 145 46 2 chr11 2936776 2936871 -147846682 - L1ME1 LINE L1 -767 5403 5338 848 61 0 0 chr11 2936902 2937000 -147846553 - AluY SINE Alu -220 98 1 492 256 23 51 chr11 2937010 2937225 -147846328 - L1M4 LINE L1 -2768 3378 3170 1252 196 19 16 chr11 2937229 2937546 -147846007 + L1M4 LINE L1 4987 5304 -842 1269 193 8 29 chr11 2937546 2937784 -147845769 + AluJb SINE Alu 1 233 -79 1798 150 31 11 chr11 2937786 2938073 -147845480 - AluSx SINE Alu -14 298 6 402 238 0 10 chr11 2938079 2938180 -147845373 + L1MA10 LINE L1 6205 6304 -30 285 73 0 0 chr11 2938217 2938258 -147845295 + Alu SINE Alu 256 296 -5 2161 116 10 0 chr11 2939656 2939948 -147843605 + AluSp SINE Alu 1 295 -18 23 0 0 0 chr11 2940526 2940549 -147843004 + AT_rich Low_complexity Low_complexity 1 23 0 10452 152 60 63 chr11 2940648 2942153 -147841400 + Tigger1 DNA MER2_type 1 1509 -909 1807 156 3 7 chr11 2942153 2942435 -147841118 + AluJb SINE Alu 1 281 -31 10452 152 60 63 chr11 2942435 2942648 -147840905 + Tigger1 DNA MER2_type 1509 1721 -697 1753 166 17 20 chr11 2942648 2942950 -147840603 + AluJb SINE Alu 3 303 -9 10452 152 60 63 chr11 2942950 2943656 -147839897 + Tigger1 DNA MER2_type 1721 2418 0 2016 150 0 7 chr11 2944349 2944649 -147838904 - AluSx SINE Alu -8 304 7 286 304 65 93 chr11 2945061 2945280 -147838273 + MIR SINE MIR 23 236 -26 1535 103 43 47 chr11 2945280 2945514 -147838039 - AluSg SINE Alu -14 296 64 286 304 65 93 chr11 2945514 2945541 -147838012 + MIR SINE MIR 236 262 0 277 208 19 0 chr11 2945566 2945619 -147837934 + L2 LINE L2 3208 3261 -11 314 352 56 16 chr11 2945695 2945820 -147837733 - L2 LINE L2 -4 3268 3139 684 149 116 25 chr11 2945900 2946021 -147837532 + FLAM_C SINE Alu 2 133 0 296 269 181 40 chr11 2946108 2946257 -147837296 + L2 LINE L2 2919 3088 -184 262 325 18 61 chr11 2946414 2946528 -147837025 + MIR SINE MIR 19 127 -81 28 29 0 0 chr11 2948315 2948350 -147835203 + AT_rich Low_complexity Low_complexity 1 35 0 214 237 46 118 chr11 2948703 2948855 -147834698 + MIR SINE MIR 53 193 -69 192 293 43 0 chr11 2949035 2949089 -147834464 + MIR SINE MIR 48 104 -104 1722 173 7 0 chr11 2949206 2949477 -147834076 + AluJo SINE Alu 1 273 -39 2260 67 34 17 chr11 2949575 2949872 -147833681 - AluY SINE Alu -9 302 1 1236 148 31 10 chr11 2950293 2950489 -147833064 + AluJo SINE Alu 1 200 -112 231 339 99 6 chr11 2950557 2950728 -147832825 - L2 LINE L2 -960 2354 2168 410 289 59 48 chr11 2950844 2951031 -147832522 - MIR SINE MIR -15 247 59 237 335 7 20 chr11 2951675 2951827 -147831726 + GA-rich Low_complexity Low_complexity 2 151 0 227 302 223 0 chr11 2953457 2953596 -147829957 - MIR SINE MIR -16 246 77 249 233 48 101 chr11 2954521 2954559 -147828994 - MER34B LTR ERV1 -65 500 462 2421 74 0 0 chr11 2954559 2954855 -147828698 - AluY SINE Alu -15 296 1 249 233 48 101 chr11 2954855 2955005 -147828548 - MER34B LTR ERV1 -103 462 322 538 243 15 7 chr11 2956083 2956219 -147827334 - MIR SINE MIR 0 262 126 1124 178 130 0 chr11 2957580 2957827 -147825726 - MLT2B3 LTR ERVL -233 321 43 587 140 0 11 chr11 2957828 2957921 -147825632 + HY4 scRNA scRNA 2 93 0 1023 167 0 0 chr11 2957933 2958083 -147825470 + AluJo SINE Alu 87 236 -76 373 269 50 56 chr11 2958359 2958519 -147825034 - L2 LINE L2 -87 3185 3027 643 118 0 11 chr11 2959176 2959269 -147824284 + HY4 scRNA scRNA 2 93 0 1440 146 0 0 chr11 2959282 2959488 -147824065 + AluJo SINE Alu 86 291 -21 388 257 67 8 chr11 2959762 2959883 -147823670 + MIR SINE MIR 21 150 -82 1162 0 50 6 chr11 2959925 2960084 -147823469 + (AGATG)n Simple_repeat Simple_repeat 5 170 0 309 264 104 110 chr11 2960110 2960208 -147823345 + MIR SINE MIR 7 106 -156 2400 64 4 0 chr11 2960208 2960524 -147823029 - AluSp SINE Alu 0 317 1 309 264 104 110 chr11 2960524 2960606 -147822947 + MIR SINE MIR 106 187 -75 436 231 77 50 chr11 2960781 2960940 -147822613 - MIR3 SINE MIR -17 191 28 2507 68 0 10 chr11 2961289 2961596 -147821957 + AluSq SINE Alu 1 304 -9 184 338 0 27 chr11 2961736 2961810 -147821743 - MIR3 SINE MIR 0 208 137 312 197 16 0 chr11 2963873 2963934 -147819619 + MIR SINE MIR 81 142 -66 194 333 78 35 chr11 2964004 2964145 -147819408 - L2 LINE L2 -156 3116 2970 2280 108 3 16 chr11 2964719 2965035 -147818518 - AluSx SINE Alu 0 312 1 436 281 64 27 chr11 2965059 2965495 -147818058 - L1MC4a LINE L1 -306 5815 5437 2131 131 0 0 chr11 2965497 2965794 -147817759 - AluJo SINE Alu -15 297 1 217 164 0 55 chr11 2966156 2966211 -147817342 + L2 LINE L2 2333 2384 -930 1301 138 0 96 chr11 2966295 2966440 -147817113 + AluJo SINE Alu 1 158 -154 1978 96 4 0 chr11 2966440 2966691 -147816862 + AluSx SINE Alu 36 287 -25 306 0 0 0 chr11 2966697 2966731 -147816822 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 1301 138 0 96 chr11 2966731 2966838 -147816715 + AluJo SINE Alu 163 235 -77 2426 92 0 3 chr11 2966853 2967158 -147816395 + AluSq SINE Alu 1 304 -9 308 264 54 14 chr11 2967245 2967399 -147816154 + MLT1K LTR MaLR 99 262 -326 658 282 68 19 chr11 2967503 2967866 -147815687 + LTR16C LTR ERVL 52 489 -2 263 380 8 0 chr11 2969413 2969534 -147814019 - L2 LINE L2 -773 2541 2420 717 36 0 0 chr11 2969576 2969660 -147813893 - LTR7 LTR ERV1 -2 448 365 10187 95 3 10 chr11 2969760 2971233 -147812320 - HERVH LTR ERV1 -6251 1462 1 2295 66 5 2 chr11 2971235 2971593 -147811960 - LTR7 LTR ERV1 -2 448 1 1143 145 31 110 chr11 2971700 2971873 -147811680 - L1MA10 LINE L1 0 6334 6149 1906 143 6 16 chr11 2971873 2972188 -147811365 - AluSx SINE Alu 0 312 1 1980 100 14 11 chr11 2972193 2972503 -147811050 - AluSp SINE Alu 0 311 1 195 42 0 0 chr11 2972512 2972536 -147811017 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1143 145 31 110 chr11 2972536 2972663 -147810890 - L1MA10 LINE L1 -197 6137 6042 235 200 0 0 chr11 2972676 2972721 -147810832 + L2 LINE L2 3226 3270 -2 211 370 59 0 chr11 2973262 2973381 -147810172 + L2 LINE L2 2624 2749 -565 442 315 129 4 chr11 2973626 2973867 -147809686 + L2 LINE L2 2919 3189 -83 1699 205 109 17 chr11 2974598 2975018 -147808535 + LTR2B LTR ERV1 32 490 0 2393 59 0 0 chr11 2975349 2975638 -147807915 - AluSc SINE Alu -20 289 1 1758 104 107 4 chr11 2975995 2976275 -147807278 - AluSg1 SINE Alu 0 309 1 267 275 14 0 chr11 2978278 2978347 -147805206 - L3 LINE CR1 -14 1563 1494 312 288 0 0 chr11 2978429 2978502 -147805051 - MIR SINE MIR -139 123 51 2216 100 0 3 chr11 2978505 2978805 -147804748 + AluSx SINE Alu 7 305 -7 1061 146 12 0 chr11 2978805 2978976 -147804577 + AluSg/x SINE Alu 134 306 -6 2333 66 0 7 chr11 2981139 2981442 -147802111 + AluY SINE Alu 1 301 -10 187 302 66 90 chr11 2982674 2983008 -147800545 + L2 LINE L2 2947 3272 0 229 258 0 16 chr11 2983009 2983071 -147800482 + (TGAG)n Simple_repeat Simple_repeat 3 63 0 380 254 118 0 chr11 2985427 2985537 -147798016 - L2 LINE L2 0 3313 3191 839 167 0 0 chr11 2985591 2985723 -147797830 + FLAM_C SINE Alu 1 132 -11 25 0 0 0 chr11 2985723 2985748 -147797805 + AT_rich Low_complexity Low_complexity 1 25 0 454 279 100 79 chr11 2985765 2986205 -147797348 - L2 LINE L2 -179 3093 2621 1911 148 0 3 chr11 2986205 2986496 -147797057 + AluSx SINE Alu 1 290 -22 454 279 100 79 chr11 2986496 2986551 -147797002 - L2 LINE L2 -651 2621 2569 1586 154 82 4 chr11 2986908 2987188 -147796365 + AluJb SINE Alu 3 304 -8 252 366 131 34 chr11 2987606 2988018 -147795535 + L2 LINE L2 2819 3270 -2 1719 155 4 4 chr11 2988116 2988394 -147795159 + AluJb SINE Alu 23 300 -12 2141 111 7 0 chr11 2988414 2988712 -147794841 + AluSx SINE Alu 1 300 -12 1435 258 177 9 chr11 2988762 2988857 -147794696 + L1MC4 LINE L1 6969 7047 -995 2254 115 0 0 chr11 2988857 2989169 -147794384 + AluSx SINE Alu 1 312 0 1435 258 177 9 chr11 2989169 2989751 -147793802 + L1MC4 LINE L1 7047 7760 -282 2118 98 3 0 chr11 2989753 2990048 -147793505 + AluSg SINE Alu 1 296 -14 350 310 23 0 chr11 2990048 2990135 -147793418 + L1MC4 LINE L1 6615 6703 -1339 334 298 48 0 chr11 2990131 2990215 -147793338 - L1MC4 LINE L1 -1339 6703 6616 * 559 270 132 9 chr11 2990216 2990523 -147793030 + L1MC4 LINE L1 7592 8042 0 213 232 0 0 chr11 2990535 2990604 -147792949 + (TGAA)n Simple_repeat Simple_repeat 3 71 0 2150 81 3 11 chr11 2990936 2991240 -147792313 - AluSx SINE Alu 0 303 2 250 278 213 9 chr11 2991634 2991742 -147791811 - MIR3 SINE MIR -28 180 51 947 91 0 0 chr11 2992848 2992969 -147790584 + AluJ SINE Alu 3 123 -189 23 0 0 0 chr11 2992969 2992992 -147790561 + AT_rich Low_complexity Low_complexity 1 23 0 349 307 83 83 chr11 2993115 2993428 -147790125 + L2 LINE L2 2873 3185 -87 854 225 6 12 chr11 2993565 2993738 -147789815 + AluJ SINE Alu 123 294 -18 284 350 80 25 chr11 2994295 2994495 -147789058 + L2 LINE L2 2977 3187 -85 933 175 0 18 chr11 2994513 2994684 -147788869 - AluJo SINE Alu -13 299 132 1724 160 3 3 chr11 2994699 2994981 -147788572 - AluJb SINE Alu -30 282 1 318 291 12 0 chr11 2995427 2995513 -147788040 - L3 LINE CR1 -84 1493 1407 2170 119 0 0 chr11 2995542 2995854 -147787699 - AluSx SINE Alu 0 312 1 841 154 0 22 chr11 2995874 2996010 -147787543 - AluJo SINE Alu -169 133 1 1133 77 11 17 chr11 2996017 2996198 -147787355 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1448 145 0 4 chr11 2996224 2996451 -147787102 - AluSg/x SINE Alu -1 311 86 552 332 118 26 chr11 2996451 2996600 -147786953 - L3 LINE CR1 -196 1381 1247 1759 100 4 8 chr11 2996600 2996850 -147786703 - AluSx SINE Alu -6 306 58 552 332 118 26 chr11 2996850 2997116 -147786437 - L3 LINE CR1 -330 1247 928 257 189 19 0 chr11 2998246 2998299 -147785254 + MIR SINE MIR 112 165 -97 1767 162 10 10 chr11 2999064 2999372 -147784181 + AluJb SINE Alu 4 311 -1 1772 93 0 16 chr11 2999377 2999624 -147783929 + AluSx SINE Alu 1 243 -69 213 214 29 57 chr11 3000144 3000214 -147783339 - L2 LINE L2 -182 3090 3023 186 289 0 0 chr11 3000302 3000347 -147783206 - L2 LINE L2 -569 2745 2701 1132 149 9 33 chr11 3000351 3000566 -147782987 - AluJb SINE Alu -18 294 85 270 321 102 27 chr11 3000567 3000754 -147782799 - L2 LINE L2 -601 2713 2513 234 128 0 0 chr11 3001123 3001162 -147782391 + (TG)n Simple_repeat Simple_repeat 2 40 0 1938 107 68 0 chr11 3001693 3001974 -147781579 + AluSq SINE Alu 1 300 -13 1013 160 24 0 chr11 3001974 3002143 -147781410 + AluSg/x SINE Alu 132 304 -6 640 236 25 19 chr11 3002144 3002301 -147781252 - MIR SINE MIR -82 180 23 2043 102 7 3 chr11 3002773 3003066 -147780487 + AluSx SINE Alu 2 295 -17 1495 159 53 40 chr11 3003076 3003377 -147780176 + AluJb SINE Alu 1 305 -7 2533 40 0 0 chr11 3003378 3003675 -147779878 + AluY SINE Alu 1 297 -14 1408 157 132 18 chr11 3003684 3003964 -147779589 + AluJb SINE Alu 1 312 0 2060 126 7 0 chr11 3004320 3004630 -147778923 - AluSx SINE Alu 0 312 1 300 301 8 38 chr11 3007235 3007368 -147776185 + MIR3 SINE MIR 53 181 -27 966 266 40 4 chr11 3009683 3009918 -147773635 + MIR SINE MIR 2 248 -14 2431 54 10 0 chr11 3009918 3010215 -147773338 - AluY SINE Alu -11 300 1 966 266 40 4 chr11 3010215 3010231 -147773322 + MIR SINE MIR 248 262 0 2185 113 7 0 chr11 3010545 3010846 -147772707 - AluSx SINE Alu -9 303 1 2302 81 0 7 chr11 3011046 3011342 -147772211 - AluSg SINE Alu -16 294 1 626 244 42 63 chr11 3011499 3011668 -147771885 + MIR SINE MIR 18 182 -80 1988 139 0 3 chr11 3011668 3011970 -147771583 + AluJo SINE Alu 1 301 -11 626 244 42 63 chr11 3011970 3012038 -147771515 + MIR SINE MIR 182 250 -12 200 216 0 0 chr11 3012709 3012746 -147770807 + (TG)n Simple_repeat Simple_repeat 1 37 0 404 301 48 2 chr11 3012831 3012963 -147770590 + MIR SINE MIR 21 156 -74 463 250 119 18 chr11 3013489 3013657 -147769896 - MIR SINE MIR -57 205 21 372 234 0 75 chr11 3013684 3013791 -147769762 + MIR SINE MIR 68 166 -96 730 147 123 68 chr11 3014201 3014364 -147769189 + FAM SINE Alu 1 172 -3 1750 138 12 63 chr11 3014395 3014714 -147768839 - AluJb SINE Alu -9 303 1 604 245 18 31 chr11 3014844 3015007 -147768546 + MIR SINE MIR 41 201 -61 202 331 107 8 chr11 3015080 3015201 -147768352 + L2 LINE L2 2898 3030 -242 1855 130 0 0 chr11 3015251 3015513 -147768040 - AluSx SINE Alu -46 266 5 194 240 140 40 chr11 3016690 3016790 -147766763 + L2 LINE L2 2932 3041 -231 180 0 0 0 chr11 3017276 3017296 -147766257 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 2236 99 0 13 chr11 3017511 3017823 -147765730 + AluSx SINE Alu 3 310 -2 2224 105 0 13 chr11 3018055 3018370 -147765183 + AluSx SINE Alu 1 311 -1 369 117 0 0 chr11 3020901 3020961 -147762592 + (CA)n Simple_repeat Simple_repeat 1 60 0 297 51 0 0 chr11 3021027 3021066 -147762487 + (CA)n Simple_repeat Simple_repeat 2 40 0 30 0 0 0 chr11 3022165 3022195 -147761358 + GC_rich Low_complexity Low_complexity 1 30 0 203 95 48 0 chr11 3022419 3022461 -147761092 + (CGGGG)n Simple_repeat Simple_repeat 5 48 0 1486 201 8 0 chr11 3073454 3073722 -147709831 + AluJo SINE Alu 5 274 -38 338 304 199 0 chr11 3073963 3074124 -147709429 - MIR SINE MIR -9 253 61 216 267 93 23 chr11 3074735 3074821 -147708732 + L2 LINE L2 3169 3260 -12 23 0 0 0 chr11 3074926 3074949 -147708604 + AT_rich Low_complexity Low_complexity 1 23 0 188 268 18 0 chr11 3074958 3075014 -147708539 - MIR SINE MIR -21 241 185 21 0 0 0 chr11 3075018 3075039 -147708514 + AT_rich Low_complexity Low_complexity 1 21 0 466 274 43 0 chr11 3075065 3075182 -147708371 + L2 LINE L2 3187 3308 -5 363 239 197 28 chr11 3075212 3075354 -147708199 - MIR SINE MIR -84 178 13 13439 24 1 2 chr11 3075477 3077030 -147706523 - L1P LINE L1 -1043 5103 3553 1863 88 4 0 chr11 3077026 3077275 -147706278 - L1P LINE L1 -5671 475 226 * 1002 171 64 0 chr11 3077401 3077588 -147705965 + L1MB5 LINE L1 5968 6166 -8 1726 193 7 0 chr11 3077739 3078035 -147705518 + AluJb SINE Alu 3 300 -12 731 278 179 34 chr11 3078068 3078514 -147705039 - MLT1J LTR MaLR 0 511 1 2214 112 3 3 chr11 3078559 3078853 -147704700 + AluSq SINE Alu 1 294 -19 206 227 0 23 chr11 3078920 3078964 -147704589 + GA-rich Low_complexity Low_complexity 4 46 0 759 258 32 24 chr11 3079536 3079784 -147703769 - MIR SINE MIR -1 261 12 430 293 50 14 chr11 3080052 3080192 -147703361 + MIR SINE MIR 3 147 -115 2595 68 0 0 chr11 3080328 3080714 -147702839 + AluY SINE Alu 1 386 0 201 147 0 0 chr11 3081062 3081096 -147702457 + (CA)n Simple_repeat Simple_repeat 1 34 0 2261 114 0 3 chr11 3081163 3081462 -147702091 + AluSx SINE Alu 1 298 -14 274 269 0 13 chr11 3081592 3081670 -147701883 - L2 LINE L2 0 3272 3196 419 223 79 114 chr11 3081789 3081991 -147701562 - LTR67 LTR ERVL -9 548 354 786 257 31 9 chr11 3082571 3082793 -147700760 - MIR SINE MIR -2 260 34 185 232 152 18 chr11 3083256 3083368 -147700185 + L2 LINE L2 2842 2968 -304 313 264 79 36 chr11 3084185 3084325 -147699228 - MIR3 SINE MIR -42 166 21 237 235 98 10 chr11 3084842 3084944 -147698609 - MIR SINE MIR -4 258 148 12806 95 6 8 chr11 3085056 3086852 -147696701 - L1P LINE L1 -4355 1791 1 1023 207 14 33 chr11 3087057 3087106 -147696447 + MER58A DNA MER1_type 4 52 -2368 1628 158 62 11 chr11 3087106 3087378 -147696175 - AluJo SINE Alu -26 286 1 1023 207 14 33 chr11 3087378 3087541 -147696012 + MER58A DNA MER1_type 52 212 -12 199 409 36 0 chr11 3087543 3087653 -147695900 + L2 LINE L2 2868 2981 -291 438 243 181 33 chr11 3088115 3088325 -147695228 + MIR SINE MIR 2 242 -20 3237 110 15 25 chr11 3088894 3089414 -147694139 + L1MA6 LINE L1 5768 6282 -18 301 115 0 0 chr11 3089437 3089489 -147694064 - AluJo SINE Alu 0 302 251 1200 175 0 5 chr11 3089489 3089689 -147693864 - AluJo SINE Alu -113 199 1 46 33 0 0 chr11 3089718 3089778 -147693775 + AT_rich Low_complexity Low_complexity 1 60 0 1418 273 21 40 chr11 3090164 3090416 -147693137 - L2 LINE L2 -275 3038 2783 2198 102 3 38 chr11 3090416 3090594 -147692959 - AluSp SINE Alu -11 302 138 2951 6 0 9 chr11 3090594 3090913 -147692640 - AluYb8 SINE Alu -2 316 1 2198 102 3 38 chr11 3090913 3091047 -147692506 - AluSp SINE Alu -175 138 1 1418 273 21 40 chr11 3091047 3091320 -147692233 - L2 LINE L2 -530 2783 2524 1388 129 19 5 chr11 3091877 3092086 -147691467 + L1P3 LINE L1 10 221 -6240 327 267 199 17 chr11 3092485 3092694 -147690859 + MIR SINE MIR 10 247 -15 1693 133 13 63 chr11 3093081 3093302 -147690251 - MLT1A1 LTR MaLR 0 365 161 2396 100 0 0 chr11 3093302 3093613 -147689940 - AluY SINE Alu 0 311 1 1693 133 13 63 chr11 3093613 3093692 -147689861 - MLT1A1 LTR MaLR -204 161 80 999 136 7 7 chr11 3093698 3093853 -147689700 - LTR32 LTR ERVL 0 471 317 1879 182 32 15 chr11 3093932 3094273 -147689280 - LTR32 LTR ERVL -110 361 15 541 152 0 0 chr11 3094273 3094352 -147689201 - MLT1A1 LTR MaLR -295 79 1 272 277 54 36 chr11 3094581 3094693 -147688860 + L2 LINE L2 3158 3271 -1 542 283 61 100 chr11 3094726 3095087 -147688466 + L2 LINE L2 2924 3270 -2 487 250 123 26 chr11 3095635 3095837 -147687716 + MIR SINE MIR 38 262 0 2129 111 35 0 chr11 3096762 3097050 -147686503 + AluSx SINE Alu 1 298 -14 223 313 76 8 chr11 3097390 3097521 -147686032 - MIR SINE MIR -11 251 112 1876 154 0 39 chr11 3097615 3097921 -147685632 - AluJb SINE Alu -18 294 1 2398 126 3 15 chr11 3098221 3098562 -147684991 - MER1B DNA MER1_type 0 337 1 850 250 9 4 chr11 3098850 3099134 -147684419 - MIR SINE MIR -13 249 1 2422 94 3 0 chr11 3099770 3100077 -147683476 + AluSg SINE Alu 1 308 -2 263 340 108 30 chr11 3100205 3100537 -147683016 - L2 LINE L2 -395 2919 2562 481 306 128 37 chr11 3100653 3101248 -147682305 - L2 LINE L2 -979 2335 1687 520 264 54 0 chr11 3101505 3101653 -147681900 + L2 LINE L2 2191 2346 -968 1799 257 75 17 chr11 3101657 3102433 -147681120 + L2 LINE L2 2488 3312 -1 269 274 69 20 chr11 3102454 3102556 -147680997 - MIR SINE MIR -32 230 124 2419 82 0 0 chr11 3102566 3102860 -147680693 + AluY SINE Alu 1 294 -17 1737 77 0 0 chr11 3103778 3103986 -147679567 + AluY SINE Alu 1 208 -103 491 60 0 0 chr11 3103986 3104053 -147679500 + AluY SINE Alu 239 305 -4 271 349 0 0 chr11 3105237 3105323 -147678230 + L2 LINE L2 3186 3271 -1 351 0 0 0 chr11 3105432 3105471 -147678082 + (CA)n Simple_repeat Simple_repeat 2 40 0 235 167 0 62 chr11 3105930 3105978 -147677575 + MER58B DNA MER1_type 47 91 -250 1348 176 43 4 chr11 3107232 3107487 -147676066 + MER58B DNA MER1_type 76 340 -1 4290 154 18 72 chr11 3107511 3108421 -147675132 - L1MB8 LINE L1 -6 6172 5313 1812 174 31 3 chr11 3108439 3108766 -147674787 - L1PA16 LINE L1 -9 6157 5822 767 156 0 0 chr11 3108786 3108914 -147674639 - FRAM SINE Alu 0 40 1 355 316 151 34 chr11 3109285 3109636 -147673917 + L3 LINE CR1 948 1339 -238 1638 176 56 0 chr11 3109752 3110048 -147673505 + AluJb SINE Alu 1 311 0 2313 92 3 13 chr11 3110662 3110966 -147672587 - AluSq SINE Alu -12 301 1 2041 126 11 0 chr11 3111294 3111580 -147671973 + AluSx SINE Alu 1 289 -23 247 167 0 0 chr11 3111983 3112025 -147671528 + L3 LINE CR1 1533 1574 -3 264 231 0 46 chr11 3112345 3112410 -147671143 - MIR SINE MIR -64 144 83 429 221 65 26 chr11 3113171 3113325 -147670228 + MIR SINE MIR 79 238 -24 843 194 159 9 chr11 3113652 3113879 -147669674 + MIR SINE MIR 2 262 0 254 254 0 0 chr11 3114409 3114472 -147669081 - L1M4 LINE L1 -875 5271 5209 2487 53 3 10 chr11 3114773 3115076 -147668477 + AluY SINE Alu 1 301 -10 1314 223 70 76 chr11 3115079 3115283 -147668270 - L1M4 LINE L1 -1059 5087 4883 2182 134 0 0 chr11 3115283 3115582 -147667971 + AluSx SINE Alu 1 299 -13 1314 223 70 76 chr11 3115582 3115940 -147667613 - L1M4 LINE L1 -1263 4883 4525 227 30 0 30 chr11 3115940 3115973 -147667580 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 524 137 253 0 chr11 3115979 3116074 -147667479 - FLAM_C SINE Alu -14 119 1 1314 223 70 76 chr11 3116074 3116145 -147667408 - L1M4 LINE L1 -1626 4520 4450 2548 78 0 0 chr11 3116145 3116454 -147667099 - AluY SINE Alu -2 309 1 1314 223 70 76 chr11 3116454 3116525 -147667028 - L1M4 LINE L1 -1696 4450 4378 1994 234 81 47 chr11 3116525 3117071 -147666482 - Charlie7 DNA MER1_type -1125 1487 903 2209 100 0 0 chr11 3117071 3117379 -147666174 + AluSc SINE Alu 1 308 0 1994 234 81 47 chr11 3117379 3117621 -147665932 - Charlie7 DNA MER1_type -1709 903 671 586 197 87 104 chr11 3117638 3117821 -147665732 + MER58A DNA MER1_type 45 224 0 1185 268 138 53 chr11 3117824 3118447 -147665106 - Charlie7 DNA MER1_type -1936 676 1 1228 42 24 0 chr11 3118917 3119082 -147664471 + (GAAA)n Simple_repeat Simple_repeat 3 171 0 211 318 16 0 chr11 3119106 3119169 -147664384 + MIR SINE MIR 76 139 -69 2304 95 0 32 chr11 3119627 3119942 -147663611 + AluSx SINE Alu 1 305 -7 1022 166 37 0 chr11 3120601 3120764 -147662789 + AluJo SINE Alu 1 169 -143 1451 85 0 40 chr11 3120824 3121023 -147662530 + AluSg/x SINE Alu 105 295 -15 214 191 107 71 chr11 3121364 3121448 -147662105 - L2 LINE L2 0 3272 3186 718 178 0 0 chr11 3121628 3121735 -147661818 + FLAM_C SINE Alu 24 130 -13 192 47 47 23 chr11 3122482 3122525 -147661028 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 201 264 0 19 chr11 3122614 3122667 -147660886 - L2 LINE L2 -8 3264 3213 924 201 126 10 chr11 3122668 3122867 -147660686 + MER58A DNA MER1_type 2 223 -1 462 183 139 17 chr11 3122876 3122991 -147660562 + L1ME3 LINE L1 6027 6155 -7 2018 125 27 10 chr11 3123096 3123391 -147660162 + AluSx SINE Alu 7 306 -6 23 33 0 0 chr11 3123391 3123421 -147660132 + AT_rich Low_complexity Low_complexity 1 30 0 1254 100 0 0 chr11 3123953 3124113 -147659440 - AluSg/x SINE Alu -16 294 135 253 291 35 0 chr11 3124451 3124537 -147659016 - MIR SINE MIR -107 155 67 279 213 17 43 chr11 3125174 3125263 -147658290 - HERV16 LTR ERVL -2848 2148 2082 1222 131 159 19 chr11 3125298 3125544 -147658009 + L1MB7 LINE L1 5839 6118 -66 776 214 0 0 chr11 3125545 3125676 -147657877 + FLAM_C SINE Alu 2 132 -11 1539 188 3 14 chr11 3125714 3126001 -147657552 - AluJo SINE Alu -20 292 9 2373 76 3 0 chr11 3126300 3126589 -147656964 + AluSq SINE Alu 1 290 -23 1232 255 79 44 chr11 3127055 3127241 -147656312 + MLT1K LTR MaLR 3 181 -295 1775 140 12 64 chr11 3127241 3127570 -147655983 - AluJb SINE Alu 0 312 1 1232 255 79 44 chr11 3127570 3127838 -147655715 + MLT1K LTR MaLR 181 473 -3 2033 155 3 0 chr11 3128071 3128375 -147655178 + AluJb SINE Alu 1 305 -7 2200 87 13 23 chr11 3128917 3129053 -147654500 + AluSx SINE Alu 1 137 -175 2305 93 7 3 chr11 3129053 3129354 -147654199 + AluSq SINE Alu 1 302 -11 2200 87 13 23 chr11 3129354 3129517 -147654036 + AluSx SINE Alu 137 297 -15 4234 162 50 72 chr11 3129566 3129712 -147653841 + L1MB5 LINE L1 4967 5115 -1065 188 83 0 28 chr11 3129712 3129748 -147653805 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1785 144 4 11 chr11 3129754 3130024 -147653529 - AluSx SINE Alu -38 274 7 4234 162 50 72 chr11 3130024 3130107 -147653446 + L1MB5 LINE L1 5120 5203 -977 2524 56 0 7 chr11 3130107 3130410 -147653143 + AluY SINE Alu 1 301 -10 753 216 0 8 chr11 3130413 3130547 -147653006 + FLAM_C SINE Alu 1 133 0 4234 162 50 72 chr11 3130547 3131064 -147652489 + L1MB5 LINE L1 5205 5547 -633 2199 109 3 0 chr11 3131064 3131358 -147652195 + AluSc SINE Alu 1 295 -14 4234 162 50 72 chr11 3131358 3131978 -147651575 + L1MB5 LINE L1 5547 6180 0 36261 85 12 18 chr11 3132109 3135084 -147648469 + L1PA6 LINE L1 240 3163 -2991 2430 76 0 10 chr11 3135084 3135398 -147648155 + AluY SINE Alu 1 311 0 36261 85 12 18 chr11 3135398 3138373 -147645180 + L1PA6 LINE L1 3163 6154 0 468 137 86 26 chr11 3138403 3138520 -147645033 + MIR SINE MIR 69 192 -70 236 177 89 137 chr11 3138553 3138620 -147644933 + Charlie8 DNA MER1_type 36 96 -2321 2036 148 0 0 chr11 3138620 3138918 -147644635 + AluSx SINE Alu 1 298 -14 236 177 89 137 chr11 3138918 3138974 -147644579 + Charlie8 DNA MER1_type 96 153 -2264 1652 192 0 7 chr11 3138976 3139247 -147644306 + AluJb SINE Alu 1 269 -43 903 143 8 0 chr11 3139466 3139592 -147643961 - FLAM_A SINE Alu -2 131 5 254 309 52 10 chr11 3139624 3139721 -147643832 + L2 LINE L2 3122 3222 -50 3319 256 63 23 chr11 3140146 3141047 -147642506 + L1M4b LINE L1 11 947 -5912 1285 167 0 39 chr11 3141047 3141108 -147642445 + AluJo SINE Alu 84 146 -166 301 93 37 0 chr11 3141108 3141162 -147642391 + L1PA8 LINE L1 6117 6172 0 1285 167 0 39 chr11 3141162 3141333 -147642220 + AluJo SINE Alu 146 307 -5 2873 204 84 44 chr11 3141334 3141718 -147641835 + L1M4b LINE L1 945 1312 -5647 224 30 30 0 chr11 3141718 3141751 -147641802 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 2873 204 84 44 chr11 3141751 3142247 -147641306 + L1M4b LINE L1 1312 1787 -5172 1748 148 7 4 chr11 3142247 3142517 -147641036 + AluSx SINE Alu 37 307 -5 2873 204 84 44 chr11 3142517 3142995 -147640558 + L1M4b LINE L1 1787 2369 -4590 1227 259 100 92 chr11 3142995 3143310 -147640243 - L2 LINE L2 -31 3282 2971 2187 108 3 0 chr11 3143310 3143597 -147639956 - AluSx SINE Alu -24 288 1 1227 259 100 92 chr11 3143597 3144224 -147639329 - L2 LINE L2 -342 2971 2327 1509 186 13 16 chr11 3144224 3144531 -147639022 + L1M4 LINE L1 5027 5332 -814 1736 167 20 26 chr11 3144531 3144837 -147638716 - AluSx SINE Alu -6 306 3 24 32 0 0 chr11 3144845 3144876 -147638677 + AT_rich Low_complexity Low_complexity 1 31 0 1752 110 13 77 chr11 3144876 3144991 -147638562 + L1P4 LINE L1 5476 5597 -569 2602 57 3 6 chr11 3144991 3145305 -147638248 - AluSp SINE Alu 0 313 1 1752 110 13 77 chr11 3145305 3145489 -147638064 + L1P4 LINE L1 5597 5756 -410 1000 105 0 26 chr11 3145501 3145654 -147637899 + AluJo SINE Alu 1 149 -163 21 0 0 0 chr11 3145776 3145797 -147637756 + AT_rich Low_complexity Low_complexity 1 21 0 1599 173 26 4 chr11 3146055 3146326 -147637227 - AluJo SINE Alu -30 282 6 311 216 137 20 chr11 3146754 3146856 -147636697 - MIR SINE MIR -27 235 122 827 160 30 15 chr11 3147088 3147219 -147636334 + FLAM_A SINE Alu 1 133 0 212 0 36 0 chr11 3147246 3147274 -147636279 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1211 128 35 66 chr11 3147333 3147559 -147635994 - MER20 DNA MER1_type 0 219 1 804 123 0 0 chr11 3147600 3147714 -147635839 - AluSg SINE Alu -23 289 176 803 114 0 0 chr11 3147714 3147819 -147635734 - AluSg SINE Alu -205 105 1 2053 149 0 9 chr11 3148606 3148921 -147634632 - AluJo SINE Alu 0 312 1 261 367 43 7 chr11 3148921 3149060 -147634493 + MIR SINE MIR 92 235 -27 252 336 35 9 chr11 3149097 3149213 -147634340 - MIR SINE MIR -27 235 117 567 161 108 0 chr11 3149268 3149398 -147634155 + L1MB7 LINE L1 6041 6184 0 1957 144 0 13 chr11 3149520 3149825 -147633728 - AluSx SINE Alu -11 301 1 220 246 0 0 chr11 3150409 3150454 -147633099 + CT-rich Low_complexity Low_complexity 5 52 -9 2222 112 7 0 chr11 3150454 3150757 -147632796 - AluSq SINE Alu -8 305 1 220 246 0 0 chr11 3150757 3150768 -147632785 + CT-rich Low_complexity Low_complexity 51 61 0 352 296 148 0 chr11 3151282 3151397 -147632156 + MIR SINE MIR 23 154 -108 287 333 8 0 chr11 3151879 3152011 -147631542 + (TG)n Simple_repeat Simple_repeat 2 134 0 452 308 39 19 chr11 3153134 3153342 -147630211 - L2 LINE L2 -196 3076 2865 30345 30 4 1 chr11 3153497 3157831 -147625722 + L1PA3 LINE L1 1811 6155 0 2602 119 45 31 chr11 3158110 3158490 -147625063 + MSTA LTR MaLR 1 389 -39 1954 144 10 13 chr11 3158490 3158802 -147624751 - AluSx SINE Alu -1 311 1 2602 119 45 31 chr11 3158802 3158840 -147624713 + MSTA LTR MaLR 389 425 -3 1771 135 114 3 chr11 3160143 3160440 -147623113 + MER7A DNA MER2_type 2 329 -17 3565 139 11 20 chr11 3160446 3161006 -147622547 - MER6A DNA MER2_type -50 555 1 2299 74 7 13 chr11 3161097 3161395 -147622158 + AluY SINE Alu 1 296 -15 2148 108 17 3 chr11 3161418 3161740 -147621813 + AluSx SINE Alu 1 312 0 190 246 53 18 chr11 3162116 3162173 -147621380 + L2 LINE L2 3004 3062 -210 858 140 22 0 chr11 3162581 3162717 -147620836 + AluJb SINE Alu 1 139 -173 233 318 149 0 chr11 3162921 3163028 -147620525 + L2 LINE L2 3191 3313 0 350 303 114 18 chr11 3163535 3163734 -147619819 + MIR3 SINE MIR 2 220 -42 1124 231 12 16 chr11 3164009 3164252 -147619301 + MIR SINE MIR 12 253 -9 1997 97 6 74 chr11 3164256 3164567 -147618986 + AluSx SINE Alu 1 290 -22 314 295 66 41 chr11 3164605 3164682 -147618871 + L2 LINE L2 3142 3225 -47 2423 155 77 10 chr11 3164682 3165083 -147618470 - MSTA LTR MaLR 0 428 1 314 295 66 41 chr11 3165083 3165127 -147618426 + L2 LINE L2 3225 3266 -6 418 302 26 0 chr11 3165163 3165279 -147618274 + MIR SINE MIR 75 193 -69 449 267 17 33 chr11 3165762 3165930 -147617623 + MIR3 SINE MIR 23 186 -22 305 283 0 33 chr11 3165930 3166022 -147617531 + MIR3 SINE MIR 83 171 -37 375 302 142 12 chr11 3166275 3166444 -147617109 + MIR3 SINE MIR 1 191 -17 512 299 92 5 chr11 3166716 3166900 -147616653 + MIR SINE MIR 29 228 -34 201 301 14 14 chr11 3167440 3167513 -147616040 - MIR SINE MIR -98 164 92 216 176 0 0 chr11 3167801 3167835 -147615718 - L2 LINE L2 -14 3299 3266 798 186 37 12 chr11 3167918 3168079 -147615474 - MIR SINE MIR -17 245 81 622 301 37 50 chr11 3168066 3168365 -147615188 - L2 LINE L2 -149 3123 2829 * 2347 172 161 47 chr11 3168630 3169095 -147614458 - L1MD2 LINE L1 -1 6358 5805 2428 84 0 0 chr11 3169095 3169392 -147614161 - AluSg SINE Alu -13 297 1 2347 172 161 47 chr11 3169392 3169541 -147614012 - L1MD2 LINE L1 -554 5805 5674 311 339 42 52 chr11 3169542 3169587 -147613966 - L2 LINE L2 -563 2751 2707 1926 156 7 13 chr11 3169587 3169888 -147613665 - AluJo SINE Alu -13 299 1 311 339 42 52 chr11 3169888 3170034 -147613519 - L2 LINE L2 -607 2707 2562 1763 134 76 0 chr11 3171088 3171371 -147612182 + AluJb SINE Alu 1 295 -17 201 312 43 35 chr11 3172500 3172641 -147610912 + MIR3 SINE MIR 50 191 -17 1884 176 23 0 chr11 3172730 3173031 -147610522 - AluJb SINE Alu -4 308 1 517 267 74 57 chr11 3173306 3173602 -147609951 - L2 LINE L2 -1 3312 3012 2924 190 58 18 chr11 3173714 3174340 -147609213 + L1ME2 LINE L1 5504 6154 -10 660 201 44 87 chr11 3174354 3174596 -147608957 + L1ME3 LINE L1 5915 6154 -12 648 158 17 0 chr11 3174653 3174773 -147608780 - MER5B DNA MER1_type -56 122 1 47 0 0 0 chr11 3174848 3174895 -147608658 + AT_rich Low_complexity Low_complexity 1 47 0 337 157 0 0 chr11 3174895 3174946 -147608607 - MER66A LTR ERV1 -140 338 288 363 323 16 0 chr11 3175004 3175128 -147608425 - L2 LINE L2 -468 2846 2721 222 284 203 42 chr11 3175273 3175583 -147607970 - L2 LINE L2 -800 2514 2155 1016 184 6 6 chr11 3175633 3175807 -147607746 + AluJb SINE Alu 138 311 -1 737 193 42 31 chr11 3175854 3176046 -147607507 - L2 LINE L2 0 3313 3120 2063 115 0 7 chr11 3176209 3176512 -147607041 - AluSg SINE Alu 0 301 1 1429 199 10 34 chr11 3176529 3176820 -147606733 - AluJo SINE Alu -28 284 1 2339 93 0 0 chr11 3176830 3177119 -147606434 - AluSc SINE Alu -20 289 1 748 185 15 0 chr11 3177183 3177313 -147606240 + FLAM_A SINE Alu 1 132 -1 1965 86 90 21 chr11 3177643 3177922 -147605631 + AluSq SINE Alu 1 298 -15 182 105 26 0 chr11 3178373 3178411 -147605142 + (TTCA)n Simple_repeat Simple_repeat 3 41 0 5676 187 70 8 chr11 3178675 3179908 -147603645 + Charlie1a DNA MER1_type 1 1309 -146 1736 149 76 4 chr11 3179965 3180240 -147603313 - AluJo SINE Alu -17 295 1 1724 180 20 10 chr11 3180411 3180706 -147602847 - AluJb SINE Alu -14 298 1 474 263 26 0 chr11 3180807 3180921 -147602632 + L2 LINE L2 3192 3308 -5 216 0 0 0 chr11 3181247 3181271 -147602282 + (TTA)n Simple_repeat Simple_repeat 2 25 0 682 208 21 0 chr11 3182273 3182417 -147601136 - MIR SINE MIR -48 214 68 381 286 43 19 chr11 3182475 3182636 -147600917 - MIR SINE MIR -90 172 8 239 344 43 0 chr11 3182674 3182767 -147600786 + L2 LINE L2 3206 3302 -11 2406 72 3 3 chr11 3182966 3183258 -147600295 - AluSx SINE Alu -19 293 2 245 313 63 46 chr11 3183575 3183726 -147599827 - MIR SINE MIR -78 184 33 234 302 47 35 chr11 3184089 3184175 -147599378 + MIR SINE MIR 37 123 -139 23 0 0 0 chr11 3185089 3185112 -147598441 + AT_rich Low_complexity Low_complexity 1 23 0 3841 143 46 113 chr11 3185113 3185367 -147598186 - L1MB5 LINE L1 -16 6158 5889 2255 101 0 3 chr11 3185367 3185674 -147597879 - AluY SINE Alu -5 306 1 2052 118 40 0 chr11 3185679 3185975 -147597578 - AluSx SINE Alu -4 308 1 3841 143 46 113 chr11 3185975 3186096 -147597457 - L1MB5 LINE L1 -289 5885 5757 2593 65 3 0 chr11 3186096 3186402 -147597151 - AluSp SINE Alu -6 307 1 3841 143 46 113 chr11 3186402 3186541 -147597012 - L1MB5 LINE L1 -417 5757 5610 507 80 13 0 chr11 3186541 3186616 -147596937 + L1PA10 LINE L1 6093 6168 0 3841 143 46 113 chr11 3186616 3187093 -147596460 - L1MB5 LINE L1 -564 5610 5221 503 331 90 53 chr11 3187131 3187347 -147596206 + L2 LINE L2 2899 3135 -137 2348 100 10 0 chr11 3187347 3187656 -147595897 - AluSq SINE Alu -1 312 1 503 331 90 53 chr11 3187656 3187795 -147595758 + L2 LINE L2 3135 3267 -5 499 257 169 8 chr11 3187880 3188117 -147595436 - L2 LINE L2 0 3313 3039 350 289 75 43 chr11 3188144 3188331 -147595222 + MIR SINE MIR 20 212 -50 530 167 0 0 chr11 3188705 3188789 -147594764 + AluSg/x SINE Alu 201 284 -26 2157 151 39 5 chr11 3188789 3189174 -147594379 + L1MB7 LINE L1 5769 6166 -18 1822 149 17 40 chr11 3189187 3189489 -147594064 - AluJb SINE Alu -17 295 1 1617 196 0 11 chr11 3189614 3189941 -147593612 - AluJo SINE Alu 0 324 1 2484 79 0 0 chr11 3190410 3190715 -147592838 + AluY SINE Alu 1 305 -6 2287 91 3 7 chr11 3190725 3191023 -147592530 + AluSc SINE Alu 1 297 -12 2330 93 0 7 chr11 3191690 3191991 -147591562 + AluY SINE Alu 1 299 -12 1925 121 0 54 chr11 3192543 3192856 -147590697 - AluSx SINE Alu -16 296 1 210 59 0 29 chr11 3193103 3193137 -147590416 - MIR SINE MIR -14 248 216 283 238 0 16 chr11 3193307 3193370 -147590183 - MIR SINE MIR -6 256 195 1346 122 0 0 chr11 3193373 3193553 -147590000 - AluSg/x SINE Alu -13 297 118 2292 93 0 3 chr11 3193720 3194011 -147589542 - AluSg SINE Alu -20 290 1 3280 144 69 29 chr11 3194282 3194649 -147588904 - L1PB4 LINE L1 -3 6153 5747 279 0 0 0 chr11 3194649 3194680 -147588873 + (TG)n Simple_repeat Simple_repeat 2 32 0 3280 144 69 29 chr11 3194680 3194965 -147588588 - L1PB4 LINE L1 -409 5747 5475 21 57 0 0 chr11 3195090 3195125 -147588428 + AT_rich Low_complexity Low_complexity 1 35 0 2562 88 3 3 chr11 3195291 3195644 -147587909 - L1PA13 LINE L1 -7 6156 5804 305 179 253 0 chr11 3195646 3195741 -147587812 + Charlie1 DNA MER1_type 2638 2756 -5 263 241 205 9 chr11 3195829 3195941 -147587612 - L2 LINE L2 0 3272 3139 324 333 109 10 chr11 3196205 3196406 -147587147 - MIR SINE MIR -36 226 6 1932 146 7 10 chr11 3196919 3197227 -147586326 - AluJb SINE Alu -5 307 1 1232 204 9 0 chr11 3197291 3197507 -147586046 + MER58A DNA MER1_type 1 218 -6 2190 105 0 3 chr11 3197926 3198247 -147585306 + AluSx SINE Alu 1 320 0 214 290 97 21 chr11 3198377 3198470 -147585083 + MIR SINE MIR 30 129 -79 288 317 120 7 chr11 3198826 3198968 -147584585 - MIR3 SINE MIR -8 200 43 315 327 72 33 chr11 3199332 3199485 -147584068 - L1ME LINE L1 -634 5487 5329 181 337 87 11 chr11 3200239 3200331 -147583222 - L2 LINE L2 -38 3234 3136 416 309 79 26 chr11 3200503 3200768 -147582785 + L3 LINE CR1 894 1172 -405 440 219 57 32 chr11 3200778 3200901 -147582652 - L2 LINE L2 -7 3306 3181 230 196 39 0 chr11 3200901 3200952 -147582601 + L3 LINE CR1 1206 1258 -319 372 262 248 10 chr11 3201019 3201221 -147582332 - MIR SINE MIR -12 250 1 362 281 39 46 chr11 3201234 3201387 -147582166 + L3 LINE CR1 1312 1463 -114 1907 144 11 0 chr11 3201407 3201713 -147581840 + AluJo SINE Alu 3 311 0 667 166 28 108 chr11 3202766 3203049 -147580504 - MER31-int LTR ERV1 -3250 1686 1313 927 126 0 53 chr11 3203296 3203447 -147580106 + FLAM_C SINE Alu 1 143 0 2433 57 0 0 chr11 3203450 3203768 -147579785 + AluY SINE Alu 1 318 0 2135 128 10 0 chr11 3205602 3205899 -147577654 - AluJb SINE Alu -12 300 1 1041 184 0 0 chr11 3205918 3206086 -147577467 - AluJ SINE Alu -14 298 131 21 0 0 0 chr11 3206091 3206112 -147577441 + AT_rich Low_complexity Low_complexity 1 21 0 889 133 0 15 chr11 3206596 3206731 -147576822 + FLAM_C SINE Alu 1 133 0 517 244 16 0 chr11 3207187 3207310 -147576243 - L2 LINE L2 0 3313 3189 202 241 38 25 chr11 3207391 3207470 -147576083 + MIR SINE MIR 113 192 -70 2077 134 3 16 chr11 3207534 3207847 -147575706 + AluSx SINE Alu 1 309 -3 3270 194 37 80 chr11 3207856 3208754 -147574799 + L1ME1 LINE L1 5290 6148 -18 838 148 16 0 chr11 3208868 3208996 -147574557 - AluJ SINE Alu -182 130 1 2117 134 0 0 chr11 3209005 3209297 -147574256 - AluSx SINE Alu -20 292 1 256 333 34 8 chr11 3209327 3209444 -147574109 + L2 LINE L2 3151 3270 -2 722 246 81 21 chr11 3209606 3209842 -147573711 + MIR SINE MIR 3 252 -10 448 309 152 10 chr11 3209859 3210063 -147573490 + MIR SINE MIR 20 252 -10 4703 130 241 44 chr11 3210321 3210337 -147573216 - L1 LINE L1 -761 5385 5373 1702 180 0 44 chr11 3210337 3210654 -147572899 - AluJb SINE Alu -9 303 1 4703 130 241 44 chr11 3210654 3210885 -147572668 - L1 LINE L1 -773 5373 5189 198 0 0 0 chr11 3210885 3210907 -147572646 + (TGG)n Simple_repeat Simple_repeat 1 22 0 4703 130 241 44 chr11 3210907 3210927 -147572626 - L1 LINE L1 -957 5189 5174 1898 124 0 0 chr11 3210927 3211177 -147572376 - AluSx SINE Alu -62 250 1 4703 130 241 44 chr11 3211177 3211801 -147571752 - L1 LINE L1 -972 5174 4674 1934 156 0 13 chr11 3211801 3212115 -147571438 + AluJb SINE Alu 1 310 -2 4703 130 241 44 chr11 3212115 3212409 -147571144 - L1 LINE L1 -1472 4674 3963 1022 261 81 32 chr11 3212417 3212789 -147570764 - MLT1G LTR MaLR -191 399 10 1864 146 14 4 chr11 3212800 3213114 -147570439 + AluSx SINE Alu 1 317 0 220 324 101 14 chr11 3213146 3213294 -147570259 + MIR SINE MIR 84 244 -18 240 300 0 22 chr11 3214002 3214092 -147569461 - L3 LINE CR1 -90 1487 1400 513 335 133 6 chr11 3214219 3214535 -147569018 - L3 LINE CR1 -343 1234 879 432 170 38 28 chr11 3216130 3216236 -147567317 - MIR SINE MIR -10 252 146 1258 296 38 81 chr11 3216239 3216953 -147566600 - MER21B LTR ERV1 -176 687 5 2346 93 0 16 chr11 3217054 3217365 -147566188 - AluSc SINE Alu -1 308 3 652 193 51 57 chr11 3267835 3267877 -147515676 - MER5B DNA MER1_type -2 176 135 1864 152 10 10 chr11 3267877 3268055 -147515498 - AluJb SINE Alu -9 303 123 261 0 0 0 chr11 3268055 3268084 -147515469 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 1864 152 10 10 chr11 3268084 3268208 -147515345 - AluJb SINE Alu -188 124 1 652 193 51 57 chr11 3268208 3268341 -147515212 - MER5B DNA MER1_type -43 135 2 2332 98 0 13 chr11 3268550 3268857 -147514696 - AluSx SINE Alu -9 303 1 748 50 0 20 chr11 3268857 3268957 -147514596 - AluY SINE Alu -35 276 179 349 263 46 46 chr11 3269115 3269160 -147514393 + MLT1K LTR MaLR 384 428 -160 1978 155 0 13 chr11 3269160 3269464 -147514089 + AluJb SINE Alu 1 300 -12 349 263 46 46 chr11 3269464 3269593 -147513960 + MLT1K LTR MaLR 427 558 -30 35 0 0 22 chr11 3269738 3269755 -147513798 + AT_rich Low_complexity Low_complexity 1 17 -28 2395 89 0 0 chr11 3269755 3270047 -147513506 + AluSx SINE Alu 1 292 -20 35 0 0 22 chr11 3270047 3270075 -147513478 + AT_rich Low_complexity Low_complexity 17 45 0 23 33 0 0 chr11 3270456 3270486 -147513067 + AT_rich Low_complexity Low_complexity 1 30 0 1221 189 62 72 chr11 3270673 3270785 -147512768 + Tigger3(Golem) DNA MER2_type 2530 2642 -387 2267 102 14 0 chr11 3270785 3271080 -147512473 - AluSq SINE Alu -14 299 1 1221 189 62 72 chr11 3271080 3271189 -147512364 + Tigger3(Golem) DNA MER2_type 2642 2751 -278 2098 135 0 25 chr11 3271189 3271507 -147512046 - AluSx SINE Alu -2 310 1 1221 189 62 72 chr11 3271507 3271685 -147511868 + Tigger3(Golem) DNA MER2_type 2751 2926 -103 1865 99 56 49 chr11 3272443 3272747 -147510806 + AluSx SINE Alu 1 306 -6 667 280 59 57 chr11 3272867 3273239 -147510314 + L2 LINE L2 2941 3313 0 186 364 34 23 chr11 3273310 3273398 -147510155 + L2 LINE L2 3136 3224 -48 207 146 0 0 chr11 3273445 3273486 -147510067 + (GGAA)n Simple_repeat Simple_repeat 2 42 0 2123 110 0 0 chr11 3273633 3273906 -147509647 + AluSx SINE Alu 24 296 -16 282 246 0 0 chr11 3274085 3274142 -147509411 - MER8 DNA MER2_type -2 237 181 2859 117 27 27 chr11 3274157 3274603 -147508950 + Tigger2 DNA MER2_type 2273 2718 0 727 359 23 11 chr11 3274893 3275155 -147508398 + MLT1K LTR MaLR 17 281 -307 180 152 0 0 chr11 3275206 3275239 -147508314 + (TAA)n Simple_repeat Simple_repeat 3 35 0 872 253 21 17 chr11 3275241 3275482 -147508071 - MIR SINE MIR 0 262 21 441 0 0 0 chr11 3275487 3275536 -147508017 + (TG)n Simple_repeat Simple_repeat 2 50 0 2422 113 30 0 chr11 3276842 3277205 -147506348 + THE1C LTR MaLR 2 375 0 22 35 0 0 chr11 3277226 3277255 -147506298 + AT_rich Low_complexity Low_complexity 1 29 0 181 333 49 12 chr11 3277271 3277352 -147506201 + MIR SINE MIR 60 143 -119 2036 143 14 0 chr11 3277526 3277812 -147505741 - AluSx SINE Alu -22 290 1 192 40 0 0 chr11 3278138 3278163 -147505390 + (TA)n Simple_repeat Simple_repeat 1 25 0 298 253 88 60 chr11 3278172 3278354 -147505199 + L1ME4a LINE L1 5917 6103 -18 8558 47 9 0 chr11 3278862 3280690 -147502863 + L1PA5 LINE L1 4300 6154 0 814 171 8 0 chr11 3280731 3280854 -147502699 - FLAM_C SINE Alu -19 124 1 1186 118 49 25 chr11 3280873 3281077 -147502476 + MER3 DNA MER1_type 1 209 0 1521 150 0 0 chr11 3281338 3281551 -147502002 + MER1B DNA MER1_type 1 213 -84 315 209 60 0 chr11 3281655 3281722 -147501831 + MER5B DNA MER1_type 108 178 0 1621 172 0 40 chr11 3281756 3282053 -147501500 - MLT1D LTR MaLR 0 505 221 274 167 91 91 chr11 3282050 3282116 -147501437 - MLT1D LTR MaLR -439 66 1 * 563 287 35 0 chr11 3282536 3282738 -147500815 - LTR33 LTR ERVL -7 514 306 458 281 97 42 chr11 3282786 3283003 -147500550 - LTR33 LTR ERVL -292 229 1 1166 162 15 0 chr11 3283032 3283230 -147500323 + L1MB1 LINE L1 5596 5796 -372 3570 111 4 132 chr11 3283230 3283771 -147499782 + MER4D LTR ERV1 1 427 -445 7775 28 17 0 chr11 3283771 3284763 -147498790 - L1PA3 LINE L1 0 6155 5160 3570 111 4 132 chr11 3284763 3284951 -147498602 + MER4D LTR ERV1 427 637 -235 658 175 0 0 chr11 3285102 3285216 -147498337 + AluSg/x SINE Alu 199 312 0 2013 131 37 6 chr11 3285216 3285544 -147498009 + L1MB1 LINE L1 5803 6140 -28 2261 85 0 7 chr11 3285544 3285827 -147497726 - AluSc SINE Alu -15 294 14 348 176 0 44 chr11 3287016 3287084 -147496469 - MER4D LTR ERV1 -455 417 353 4408 156 47 56 chr11 3287140 3288482 -147495071 + L1MB7 LINE L1 4860 6184 0 294 295 67 40 chr11 3288536 3288760 -147494793 - L2 LINE L2 -945 2369 2140 1019 59 7 13 chr11 3290251 3290403 -147493150 + SVA Other Other 716 866 -520 6611 73 37 43 chr11 3290420 3291594 -147491959 + SVA Other Other 432 1383 -3 198 0 0 0 chr11 3291608 3291630 -147491923 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 622 158 103 91 chr11 3291630 3291839 -147491714 + AluSg/x SINE Alu 121 331 0 1964 151 7 0 chr11 3291846 3292130 -147491423 + AluSx SINE Alu 1 286 -26 197 143 29 0 chr11 3292469 3292504 -147491049 + L2 LINE L2 3262 3297 -16 510 230 46 75 chr11 3294034 3294094 -147489459 - MER5B DNA MER1_type -8 170 110 2193 89 52 0 chr11 3294094 3294385 -147489168 + AluSx SINE Alu 1 306 -6 510 230 46 75 chr11 3294385 3294498 -147489055 - MER5B DNA MER1_type -68 110 2 1236 208 0 21 chr11 3295172 3295412 -147488141 - AluJo SINE Alu -77 235 1 247 309 15 0 chr11 3296035 3296103 -147487450 + L2 LINE L2 3231 3299 -14 619 239 46 10 chr11 3296172 3296369 -147487184 + L1MEc LINE L1 1972 2175 -4221 195 42 0 0 chr11 3296549 3296573 -147486980 + (CA)n Simple_repeat Simple_repeat 1 24 0 2436 89 0 19 chr11 3296895 3297208 -147486345 + AluSx SINE Alu 1 307 -5 252 267 9 57 chr11 3297607 3297712 -147485841 + MIR SINE MIR 58 157 -105 876 206 85 45 chr11 3297721 3297849 -147485704 - MER2 DNA MER2_type -4 341 220 2532 57 0 0 chr11 3297849 3298146 -147485407 + AluY SINE Alu 1 297 -14 876 206 85 45 chr11 3298146 3298264 -147485289 - MER2 DNA MER2_type -125 220 85 4282 124 53 49 chr11 3298269 3298929 -147484624 - L1MA5A LINE L1 -4 6293 5628 1963 156 0 16 chr11 3298929 3299243 -147484310 - AluJo SINE Alu -3 309 1 4282 124 53 49 chr11 3299243 3299375 -147484178 - L1MA5A LINE L1 -669 5628 5498 2285 106 6 6 chr11 3301038 3301350 -147482203 + AluSx SINE Alu 1 312 0 16668 177 66 37 chr11 3301402 3303565 -147479988 - ERVL LTR ERVL -1994 3770 1472 2311 115 0 0 chr11 3303565 3303861 -147479692 - AluSx SINE Alu -16 296 1 16668 177 66 37 chr11 3303861 3305063 -147478490 - ERVL LTR ERVL -4292 1472 307 282 270 56 0 chr11 3305092 3305181 -147478372 + L1M4 LINE L1 842 935 -5607 1756 191 3 3 chr11 3305183 3305492 -147478061 + AluSx SINE Alu 1 309 -3 1735 199 57 14 chr11 3305493 3305981 -147477572 + L1M4 LINE L1 1094 1602 -4940 2091 109 0 4 chr11 3306083 3306358 -147477195 - AluSx SINE Alu -38 274 1 253 217 0 0 chr11 3306494 3306540 -147477013 - L2 LINE L2 -15 3257 3212 208 274 158 18 chr11 3307511 3307675 -147475878 + L2 LINE L2 3127 3313 0 526 267 11 59 chr11 3307738 3307894 -147475659 - MIR SINE MIR -80 182 35 1574 170 60 3 chr11 3307894 3308177 -147475376 - AluJo SINE Alu -13 299 1 526 267 11 59 chr11 3308177 3308207 -147475346 - MIR SINE MIR -227 35 5 1059 235 71 18 chr11 3308507 3308847 -147474706 + L2 LINE L2 2944 3301 -12 199 318 63 0 chr11 3309148 3309211 -147474342 - MIR SINE MIR -46 216 150 * 297 232 134 36 chr11 3309208 3309320 -147474233 + L2 LINE L2 3191 3313 0 295 266 128 9 chr11 3309320 3309429 -147474124 - MIR SINE MIR -66 142 21 340 222 136 25 chr11 3309861 3310023 -147473530 + Charlie7 DNA MER1_type 2427 2606 -6 2441 84 3 0 chr11 3310024 3310320 -147473233 + AluSc SINE Alu 1 297 -12 872 203 122 10 chr11 3311119 3311316 -147472237 + MER20 DNA MER1_type 1 219 0 1667 187 3 10 chr11 3311743 3312037 -147471516 - AluJb SINE Alu -16 296 5 2314 87 0 13 chr11 3312049 3312349 -147471204 - AluSx SINE Alu -6 306 11 1209 94 12 0 chr11 3312349 3312509 -147471044 - AluSg/x SINE Alu -5 307 146 1914 163 3 13 chr11 3312929 3313242 -147470311 - AluJo SINE Alu -2 310 1 593 194 0 0 chr11 3313489 3313597 -147469956 + FLAM_C SINE Alu 3 110 -33 2680 126 12 7 chr11 3313697 3314103 -147469450 - L1PA15 LINE L1 -267 5898 5488 1669 144 88 11 chr11 3314103 3314388 -147469165 - AluJo SINE Alu -5 307 1 331 335 33 42 chr11 3314503 3314718 -147468835 - L1M4 LINE L1 -2574 3572 3360 345 340 205 0 chr11 3315717 3315932 -147467621 - L2 LINE L2 0 3272 3014 331 257 108 12 chr11 3316980 3317129 -147466424 - MIR3 SINE MIR -63 145 3 796 231 74 10 chr11 3317872 3318075 -147465478 - MLT1C LTR MaLR 0 467 252 611 263 58 26 chr11 3318103 3318293 -147465260 - MLT1C LTR MaLR -309 196 1 183 287 69 30 chr11 3319337 3319438 -147464115 + L2 LINE L2 2949 3053 -219 28 0 0 0 chr11 3319920 3319948 -147463605 + AT_rich Low_complexity Low_complexity 1 28 0 2120 132 0 0 chr11 3319951 3320239 -147463314 + AluSx SINE Alu 1 288 -24 1289 131 62 4 chr11 3320242 3320486 -147463067 - L1MA4A LINE L1 -3 6300 6043 189 254 79 0 chr11 3321784 3321847 -147461706 - MIR3 SINE MIR -31 177 110 533 224 209 25 chr11 3322001 3322197 -147461356 + MIR SINE MIR 27 258 -4 402 257 58 134 chr11 3322216 3322477 -147461076 - L2 LINE L2 -2 3270 3030 358 322 115 0 chr11 3322498 3322681 -147460872 - MIR SINE MIR -39 223 20 624 208 76 0 chr11 3322829 3322973 -147460580 + MIR SINE MIR 2 156 -106 183 299 91 0 chr11 3322968 3323045 -147460508 - MIR SINE MIR -1 261 178 * 548 202 171 0 chr11 3323048 3323177 -147460376 + MIR SINE MIR 112 262 0 414 206 97 45 chr11 3323429 3323584 -147459969 + MER103 DNA DNA 2 164 -2 836 143 8 15 chr11 3323641 3323774 -147459779 + FLAM_C SINE Alu 2 133 -10 480 247 95 47 chr11 3323801 3323991 -147459562 + MIR SINE MIR 63 261 -1 200 277 92 0 chr11 3323979 3324044 -147459509 - MIR SINE MIR -66 196 126 * 189 74 0 0 chr11 3324460 3324487 -147459066 + (CGG)n Simple_repeat Simple_repeat 3 29 0 885 119 24 54 chr11 3325533 3325701 -147457852 - MLT1A2 LTR MaLR -208 166 4 252 301 75 11 chr11 3326734 3326827 -147456726 + MIR3 SINE MIR 12 110 -98 1114 222 15 11 chr11 3329299 3329569 -147453984 - L1ME1 LINE L1 -5 6161 5891 726 230 125 30 chr11 3330036 3330264 -147453289 - MIR SINE MIR -2 260 16 539 231 66 16 chr11 3330571 3330692 -147452861 - L2 LINE L2 0 3272 3146 513 264 129 11 chr11 3330945 3331123 -147452430 - MIR SINE MIR -51 211 13 289 347 50 8 chr11 3331182 3331303 -147452250 - L2 LINE L2 -5 3267 3142 752 247 36 46 chr11 3331661 3331763 -147451790 + MIR SINE MIR 40 141 -121 2508 56 0 0 chr11 3331763 3332065 -147451488 + AluY SINE Alu 1 302 -9 752 247 36 46 chr11 3332065 3332181 -147451372 + MIR SINE MIR 141 256 -6 322 294 52 59 chr11 3332341 3332477 -147451076 - MIR3 SINE MIR -40 168 34 268 413 0 14 chr11 3333903 3334041 -147449512 - L2 LINE L2 -218 3054 2919 205 182 23 0 chr11 3334837 3334881 -147448672 - L2 LINE L2 -1 3271 3227 235 303 61 0 chr11 3335043 3335109 -147448444 - L2 LINE L2 -215 3057 2988 3626 173 25 23 chr11 3335618 3336345 -147447208 + L1MB5 LINE L1 5447 6174 0 2292 164 92 31 chr11 3336345 3336515 -147447038 + L1MB7 LINE L1 5110 5268 -916 1987 137 0 7 chr11 3336515 3336821 -147446732 + AluSx SINE Alu 2 305 -7 2292 164 92 31 chr11 3336821 3337470 -147446083 + L1MB7 LINE L1 5268 6167 -17 907 139 7 13 chr11 3337480 3337631 -147445922 + Tigger1 DNA MER2_type 1 150 -2268 1340 124 14 5 chr11 3337634 3337843 -147445710 + Tigger1 DNA MER2_type 2208 2418 0 351 234 175 0 chr11 3337917 3338054 -147445499 + MIR3 SINE MIR 41 201 -7 207 285 118 4 chr11 3338148 3338262 -147445291 + MIR SINE MIR 65 192 -16 327 243 0 0 chr11 3339159 3339229 -147444324 + MIR SINE MIR 61 130 -132 320 303 34 25 chr11 3340609 3340728 -147442825 - L2 LINE L2 -20 3252 3133 825 145 23 8 chr11 3340742 3340873 -147442680 + FLAM_C SINE Alu 1 133 0 181 384 36 27 chr11 3341168 3341280 -147442273 + L2 LINE L2 2224 2336 -978 328 270 120 0 chr11 3341352 3341452 -147442101 - MIR SINE MIR -65 143 32 355 271 47 0 chr11 3341806 3341913 -147441640 + MIR SINE MIR 95 206 -56 484 316 199 3 chr11 3342108 3342390 -147441163 + L3 LINE CR1 342 678 -899 391 275 14 84 chr11 3344817 3344959 -147438594 + MIR3 SINE MIR 72 203 -5 187 303 0 30 chr11 3345439 3345505 -147438048 - L2 LINE L2 -665 2649 2586 180 0 0 0 chr11 3345524 3345544 -147438009 + (TTA)n Simple_repeat Simple_repeat 2 21 0 1528 147 45 4 chr11 3345552 3345817 -147437736 - AluJo SINE Alu -36 276 1 307 270 141 38 chr11 3345872 3346057 -147437496 - MIR SINE MIR -25 237 34 198 0 0 0 chr11 3347226 3347248 -147436305 + (T)n Simple_repeat Simple_repeat 1 22 0 411 244 122 28 chr11 3347609 3347789 -147435764 + L2 LINE L2 3117 3313 0 2248 108 0 9 chr11 3349034 3349350 -147434203 + AluSq SINE Alu 1 313 0 2877 216 105 29 chr11 3349424 3350382 -147433171 - L1ME3 LINE L1 -2 6955 5894 1881 157 0 3 chr11 3350382 3350695 -147432858 + AluSx SINE Alu 1 312 0 2877 216 105 29 chr11 3350695 3350846 -147432707 - L1ME3 LINE L1 -1063 5894 5756 632 270 19 5 chr11 3350907 3351118 -147432435 - L1ME3 LINE L1 -3195 3746 3533 621 248 63 46 chr11 3351129 3351769 -147431784 + L1MEc LINE L1 2160 2694 -3452 * 821 260 99 40 chr11 3351763 3352296 -147431257 - L1ME3 LINE L1 -4887 1536 1279 1867 151 3 0 chr11 3352853 3353151 -147430402 - AluJo SINE Alu -13 299 1 417 310 89 47 chr11 3353874 3354087 -147429466 - L3 LINE CR1 0 1577 1356 332 263 58 12 chr11 3354075 3354190 -147429363 - MIR3 SINE MIR -111 97 1 * 226 296 102 0 chr11 3354353 3354451 -147429102 + MIR SINE MIR 57 164 -98 202 291 0 35 chr11 3354746 3354832 -147428721 + CT-rich Low_complexity Low_complexity 1 83 0 252 278 10 41 chr11 3355055 3355152 -147428401 + CT-rich Low_complexity Low_complexity 5 98 0 200 284 0 40 chr11 3357484 3357558 -147425995 + CT-rich Low_complexity Low_complexity 2 72 0 258 304 189 20 chr11 3358043 3358244 -147425309 - MIR SINE MIR -23 239 5 304 318 93 9 chr11 3358409 3358516 -147425037 - L1ME LINE L1 -370 5751 5636 333 100 0 0 chr11 3359074 3359124 -147424429 + (CCA)n Simple_repeat Simple_repeat 2 51 0 503 308 175 45 chr11 3359546 3360133 -147423420 - L2 LINE L2 -1 3271 2585 210 267 17 0 chr11 3360172 3360232 -147423321 - L2 LINE L2 -829 2485 2425 321 321 46 0 chr11 3360310 3360441 -147423112 - MIR SINE MIR -65 143 30 1695 134 52 14 chr11 3361334 3361625 -147421928 + AluJb SINE Alu 1 302 -10 303 296 91 61 chr11 3362573 3362705 -147420848 - MIR SINE MIR -46 216 81 244 313 6 47 chr11 3363279 3363613 -147419940 + CT-rich Low_complexity Low_complexity 1 320 0 483 173 67 0 chr11 3365713 3365817 -147417736 - MER53 DNA DNA 0 189 79 2052 116 0 0 chr11 3365907 3366209 -147417344 - AluSg SINE Alu -2 308 7 698 155 9 0 chr11 3366213 3366329 -147417224 - AluJo SINE Alu -175 137 21 214 205 179 0 chr11 3367696 3367774 -147415779 - MIR SINE MIR -51 211 120 189 262 143 12 chr11 3368101 3368185 -147415368 - L2 LINE L2 -9 3263 3169 1467 181 0 11 chr11 3368395 3368666 -147414887 - AluJo SINE Alu -24 288 21 22 56 0 0 chr11 3368994 3369030 -147414523 + AT_rich Low_complexity Low_complexity 1 36 0 822 106 8 15 chr11 3369030 3369162 -147414391 - FLAM_C SINE Alu -12 131 1 2040 117 23 3 chr11 3369359 3369658 -147413895 + AluSx SINE Alu 1 305 -7 21 82 0 0 chr11 3369815 3369864 -147413689 + AT_rich Low_complexity Low_complexity 1 49 0 1104 157 0 5 chr11 3369947 3370132 -147413421 - AluSg/x SINE Alu -12 300 117 840 181 0 0 chr11 3370625 3370796 -147412757 + CT-rich Low_complexity Low_complexity 4 174 0 277 345 48 21 chr11 3370828 3370973 -147412580 - L2 LINE L2 -34 3279 3131 824 277 59 57 chr11 3370998 3371370 -147412183 - L2 LINE L2 0 3313 2941 1843 104 49 46 chr11 3371490 3371797 -147411756 - AluSx SINE Alu -4 308 1 202 280 133 0 chr11 3372567 3372642 -147410911 - L2 LINE L2 0 3272 3188 1553 140 0 4 chr11 3372690 3372926 -147410627 - MER46A DNA MER2_type 0 236 2 216 250 0 0 chr11 3372982 3373022 -147410531 - MIR SINE MIR -7 255 216 361 257 12 70 chr11 3373390 3373561 -147409992 - L2 LINE L2 -151 3162 3002 380 299 39 74 chr11 3373563 3373670 -147409883 - L2 LINE L2 -415 2899 2790 2132 110 0 42 chr11 3373670 3373980 -147409573 - AluSq SINE Alu -16 297 1 380 299 39 74 chr11 3373980 3374103 -147409450 - L2 LINE L2 -524 2790 2677 2447 55 20 0 chr11 3374731 3375023 -147408530 + AluSx SINE Alu 1 298 -14 375 276 178 18 chr11 3375684 3375847 -147407706 - MIR3 SINE MIR -6 202 14 685 135 31 0 chr11 3375924 3376020 -147407533 + AluJb SINE Alu 10 108 -204 1402 128 52 52 chr11 3376021 3376271 -147407282 - AluSx SINE Alu -51 261 12 984 178 35 41 chr11 3376286 3376483 -147407070 + AluJb SINE Alu 106 301 -11 330 214 101 11 chr11 3376953 3377042 -147406511 + MIR SINE MIR 84 180 -82 1562 191 0 20 chr11 3377589 3377887 -147405666 - AluJo SINE Alu -20 292 1 1504 142 108 54 chr11 3377925 3378221 -147405332 - AluJo SINE Alu 0 312 1 436 265 12 0 chr11 3378236 3378319 -147405234 - FLAM_A SINE Alu -58 84 1 773 170 7 50 chr11 3378674 3378815 -147404738 + AluJb SINE Alu 2 136 -176 825 114 44 38 chr11 3378932 3379090 -147404463 - AluY SINE Alu -152 159 1 192 160 40 80 chr11 3379168 3379218 -147404335 - L2 LINE L2 -4 3309 3262 557 295 67 51 chr11 3379566 3380051 -147403502 - L1MC4a LINE L1 -462 5704 5532 2494 72 0 0 chr11 3380215 3380520 -147403033 + AluY SINE Alu 1 305 -6 28 29 0 0 chr11 3381103 3381138 -147402415 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr11 3381490 3381519 -147402034 + AT_rich Low_complexity Low_complexity 1 29 0 415 269 169 8 chr11 3381895 3382025 -147401528 + MIR SINE MIR 1 151 -111 540 157 0 0 chr11 3382059 3382148 -147401405 - AluSg/x SINE Alu -20 290 202 441 56 0 0 chr11 3382202 3382256 -147401297 + Alu SINE Alu 246 299 -10 224 229 84 36 chr11 3382270 3382353 -147401200 - MIR SINE MIR -36 226 140 213 308 0 39 chr11 3382347 3382451 -147401102 + MIR SINE MIR 162 261 -1 * 529 157 0 12 chr11 3382556 3382639 -147400914 + FLAM SINE Alu 42 123 -20 1675 79 0 19 chr11 3382678 3382894 -147400659 + AluY SINE Alu 85 296 -15 586 135 32 128 chr11 3383711 3383832 -147399721 + L1MB8 LINE L1 6044 6148 -36 1998 128 7 10 chr11 3383832 3384128 -147399425 - AluSx SINE Alu -15 297 3 586 135 32 128 chr11 3384128 3384162 -147399391 + L1MB8 LINE L1 6148 6184 0 233 413 9 0 chr11 3384163 3384272 -147399281 - L2 LINE L2 -661 2653 2544 798 250 0 6 chr11 3384287 3384443 -147399110 + FRAM SINE Alu 1 155 -21 270 271 28 28 chr11 3384575 3384682 -147398871 + L1ME4a LINE L1 3765 3871 -2275 535 298 88 0 chr11 3384798 3385013 -147398540 + L1ME4a LINE L1 4111 4344 -1802 2242 148 29 18 chr11 3385038 3385312 -147398241 - Tigger3(Golem) DNA MER2_type 0 3028 2747 2187 116 0 25 chr11 3385312 3385630 -147397923 + AluSx SINE Alu 1 310 -2 2242 148 29 18 chr11 3385630 3385739 -147397814 - Tigger3(Golem) DNA MER2_type -281 2747 2641 646 231 15 0 chr11 3385740 3385870 -147397683 + FLAM_A SINE Alu 1 132 -1 416 105 35 0 chr11 3385870 3385927 -147397626 + AluSq SINE Alu 134 192 -121 1872 153 0 7 chr11 3386283 3386570 -147396983 - AluSx SINE Alu -25 287 3 317 231 240 8 chr11 3386593 3386714 -147396839 + L1ME4a LINE L1 4461 4609 -1537 917 227 135 40 chr11 3386734 3387064 -147396489 + MLT1D LTR MaLR 1 363 -142 2293 92 0 0 chr11 3387124 3387416 -147396137 - AluSq SINE Alu -21 292 1 1882 129 4 11 chr11 3387903 3388182 -147395371 + AluSx SINE Alu 35 311 -1 1072 285 111 14 chr11 3388234 3388247 -147395306 + L1ME4a LINE L1 5291 5301 -820 1813 175 13 0 chr11 3388247 3388555 -147394998 + AluJo SINE Alu 1 312 0 1072 285 111 14 chr11 3388555 3389173 -147394380 + L1ME4a LINE L1 5301 5999 -122 193 311 39 19 chr11 3389321 3389424 -147394129 - L2 LINE L2 -1680 1634 1530 415 318 81 29 chr11 3390084 3390257 -147393296 + MIR3 SINE MIR 20 201 -7 389 230 50 0 chr11 3390288 3390388 -147393165 - MIR SINE MIR -12 250 146 425 273 62 8 chr11 3390405 3390533 -147393020 - MIR SINE MIR -74 188 54 321 296 35 52 chr11 3390592 3390707 -147392846 + MIR SINE MIR 34 146 -62 745 163 25 156 chr11 3391613 3391889 -147391664 - L1ME2 LINE L1 -11 6155 5916 1636 177 27 10 chr11 3391926 3392225 -147391328 - AluJo SINE Alu -8 304 1 1564 186 0 43 chr11 3392283 3392606 -147390947 + AluJb SINE Alu 1 309 -3 2305 125 0 0 chr11 3394150 3394454 -147389099 + AluSx SINE Alu 1 304 -8 22 0 0 0 chr11 3394707 3394729 -147388824 + AT_rich Low_complexity Low_complexity 1 22 0 699 168 0 0 chr11 3395283 3395396 -147388157 + AluJb SINE Alu 199 311 -1 334 300 0 0 chr11 3396159 3396249 -147387304 + L2 LINE L2 2679 2768 -546 231 189 189 68 chr11 3396250 3396324 -147387229 - AluJb SINE Alu -7 295 213 1551 119 33 116 chr11 3396351 3396466 -147387087 - L1MB7 LINE L1 -42 6142 6019 2509 76 0 0 chr11 3396466 3396769 -147386784 - AluSc SINE Alu -4 305 3 1551 119 33 116 chr11 3396769 3397014 -147386539 - L1MB7 LINE L1 -165 6019 5812 773 270 54 32 chr11 3397014 3397376 -147386177 + L2 LINE L2 2776 3138 -175 220 328 121 17 chr11 3397547 3397663 -147385890 - L2 LINE L2 -4 3268 3141 546 117 182 2 chr11 3397766 3397904 -147385649 + MER3 DNA MER1_type 15 208 -1 25 0 0 0 chr11 3398127 3398152 -147385401 + AT_rich Low_complexity Low_complexity 1 25 0 1185 240 100 43 chr11 3398859 3399300 -147384253 + MLT1C LTR MaLR 1 466 -1 769 216 115 16 chr11 3399402 3399705 -147383848 - MLT1E1 LTR MaLR -44 610 210 818 156 8 8 chr11 3399725 3399853 -147383700 - AluSx SINE Alu -12 300 173 921 124 0 0 chr11 3399853 3399974 -147383579 - AluSx SINE Alu -191 122 2 971 190 82 0 chr11 3399975 3400170 -147383383 - MLT1E1 LTR MaLR -437 217 7 188 271 50 86 chr11 3400810 3400950 -147382603 + MIR SINE MIR 128 262 0 313 253 88 60 chr11 3401435 3401617 -147381936 - L1ME4a LINE L1 -18 6103 5917 192 40 0 0 chr11 3401625 3401650 -147381903 + (TA)n Simple_repeat Simple_repeat 1 25 0 2023 143 14 0 chr11 3401977 3402263 -147381290 + AluSx SINE Alu 1 290 -22 206 338 62 12 chr11 3402437 3402517 -147381036 - MIR SINE MIR -119 143 60 22 35 0 0 chr11 3402533 3402562 -147380991 + AT_rich Low_complexity Low_complexity 1 29 0 2396 129 30 3 chr11 3402583 3402947 -147380606 - THE1C LTR MaLR 0 375 2 185 195 0 24 chr11 3403642 3403683 -147379870 + L2 LINE L2 3274 3313 0 306 230 0 48 chr11 3403826 3403940 -147379613 + MER5B DNA MER1_type 1 174 -4 514 178 9 19 chr11 3404112 3404219 -147379334 - L1MA9 LINE L1 0 6312 6207 1112 113 0 19 chr11 3404245 3404404 -147379149 - AluSg/x SINE Alu -25 287 132 563 253 29 58 chr11 3404923 3405036 -147378517 + MER5B DNA MER1_type 2 110 -68 2171 89 52 0 chr11 3405036 3405327 -147378226 - AluSx SINE Alu -6 306 1 563 253 29 58 chr11 3405327 3405387 -147378166 + MER5B DNA MER1_type 110 170 -8 191 305 34 0 chr11 3406744 3406803 -147376750 + L2 LINE L2 2718 2778 -536 241 283 181 65 chr11 3406916 3407054 -147376499 - L2 LINE L2 -16 3256 3103 1945 151 7 0 chr11 3407290 3407574 -147375979 - AluSx SINE Alu -26 286 1 986 59 7 13 chr11 3407683 3407835 -147375718 - SVA Other Other -520 866 716 3299 154 75 6 chr11 3408714 3409059 -147374494 - L1MB4 LINE L1 -8 6172 5852 1703 151 37 40 chr11 3409059 3409358 -147374195 - AluSx SINE Alu -12 300 3 3299 154 75 6 chr11 3409358 3409655 -147373898 - L1MB4 LINE L1 -328 5852 5486 814 166 36 67 chr11 3409660 3409853 -147373700 - AluJo SINE Alu -9 303 117 2695 191 66 40 chr11 3409872 3410643 -147372910 - L1M4c LINE L1 -4839 1703 929 1706 186 3 3 chr11 3410643 3410938 -147372615 - AluSx SINE Alu -17 295 1 2695 191 66 40 chr11 3410938 3411029 -147372524 - L1M4c LINE L1 -5613 929 842 388 218 0 0 chr11 3411058 3411136 -147372417 + ERVL LTR ERVL 307 384 -5380 3470 149 21 21 chr11 3411237 3411888 -147371665 - L1MA4A LINE L1 -348 7017 6367 * 43970 32 21 2 chr11 3411882 3417906 -147365647 - L1PA3 LINE L1 -10 6145 2 4300 196 16 22 chr11 3417907 3418688 -147364865 - L1MA4A LINE L1 -815 6393 5618 2246 104 13 13 chr11 3418688 3418997 -147364556 - AluSx SINE Alu -3 309 1 4300 196 16 22 chr11 3418997 3419158 -147364395 - L1MA4A LINE L1 -1590 5618 5457 402 173 0 0 chr11 3419167 3419242 -147364311 - L1MA5A LINE L1 0 6297 6223 4684 196 24 8 chr11 3419247 3419788 -147363765 - L1MA4A LINE L1 -3024 4184 3618 1548 118 50 5 chr11 3419788 3420008 -147363545 + MER30 DNA MER1_type 1 230 0 4684 196 24 8 chr11 3420008 3420483 -147363070 - L1MA4A LINE L1 -3590 3618 3152 1948 211 95 24 chr11 3420480 3421176 -147362377 - L1MA4A LINE L1 -5737 1472 741 * 188 311 242 0 chr11 3421428 3421560 -147361993 + MIR3 SINE MIR 16 179 -29 309 269 190 5 chr11 3421616 3421774 -147361779 - MIR SINE MIR -50 212 34 1896 156 73 43 chr11 3422035 3422406 -147361147 + MSTD LTR MaLR 6 387 -9 513 275 53 5 chr11 3422919 3423108 -147360445 - MIR SINE MIR -12 250 53 295 258 126 4 chr11 3424082 3424212 -147359341 + MIR SINE MIR 33 145 -63 220 178 44 0 chr11 3424223 3424268 -147359285 - L2 LINE L2 0 3313 3267 238 326 0 20 chr11 3424297 3424395 -147359158 + MIR SINE MIR 162 257 -5 * 542 263 134 18 chr11 3424327 3424544 -147359009 - MIR SINE MIR 0 262 21 234 0 0 0 chr11 3425084 3425110 -147358443 + (GGGAGA)n Simple_repeat Simple_repeat 6 31 0 1256 120 0 22 chr11 3425115 3425298 -147358255 - AluSg/x SINE Alu -12 300 122 226 275 0 33 chr11 3425430 3425521 -147358032 - MLT1H LTR MaLR -378 171 84 569 274 59 0 chr11 3425590 3425743 -147357810 + L1MC/D LINE L1 5453 5614 -2194 988 180 5 37 chr11 3425754 3425943 -147357610 - AluJo SINE Alu -129 183 1 1146 239 53 67 chr11 3425999 3426723 -147356830 + L1MC3 LINE L1 1421 7459 -720 264 273 10 30 chr11 3426729 3426828 -147356725 + MLT1F1 LTR MaLR 15 111 -456 227 214 36 0 chr11 3426830 3426886 -147356667 + L1MC3 LINE L1 7571 7628 -551 338 293 70 37 chr11 3427079 3427352 -147356201 + MER65A LTR ERV1 161 442 -3 29 0 0 0 chr11 3427916 3427945 -147355608 + AT_rich Low_complexity Low_complexity 1 29 0 341 303 26 62 chr11 3427996 3428191 -147355362 + MIR SINE MIR 68 255 -7 631 260 99 55 chr11 3429332 3429748 -147353805 + MER20B DNA MER1_type 184 617 -166 694 99 0 0 chr11 3429983 3430084 -147353469 + MER6 DNA MER2_type 576 676 -189 4611 163 77 7 chr11 3430197 3430220 -147353333 + MER6 DNA MER2_type 1 21 -844 1860 170 0 10 chr11 3430220 3430526 -147353027 - AluJb SINE Alu -9 303 1 4611 163 77 7 chr11 3430526 3431311 -147352242 + MER6 DNA MER2_type 21 865 0 544 225 131 25 chr11 3431341 3431501 -147352052 + MER5A DNA MER1_type 7 183 -6 193 283 0 0 chr11 3431517 3431563 -147351990 + MER5B DNA MER1_type 7 52 -126 402 286 0 36 chr11 3432431 3432543 -147351010 + MER5B DNA MER1_type 1 108 -70 303 296 64 55 chr11 3433256 3433476 -147350077 - HAL1b LINE L1 -825 523 302 742 215 99 40 chr11 3433499 3433722 -147349831 - MER106A DNA MER1_type 0 236 1 2564 191 52 93 chr11 3434187 3434943 -147348610 + MER50 LTR ERV1 10 734 0 1253 218 41 36 chr11 3435240 3435602 -147347951 - L1ME LINE L1 -505 5659 5296 354 319 85 14 chr11 3435710 3435851 -147347702 + L2 LINE L2 3111 3261 -11 1391 180 48 0 chr11 3436121 3436371 -147347182 - AluJo SINE Alu -14 298 37 271 306 51 0 chr11 3436510 3436608 -147346945 - L2 LINE L2 -632 2682 2580 3141 87 27 22 chr11 3436926 3437372 -147346181 + LTR7 LTR ERV1 1 448 -2 9268 184 64 51 chr11 3437375 3441279 -147342274 + HERVH LTR ERV1 1 3993 -3720 3113 124 0 2 chr11 3441282 3441896 -147341657 + HERVH LTR ERV1 4489 5149 -2564 1415 99 20 0 chr11 3441931 3442132 -147341421 + HERVH LTR ERV1 5615 5819 -1894 2334 95 68 14 chr11 3442132 3442502 -147341051 + HERVH LTR ERV1 7324 7713 0 3098 90 29 22 chr11 3442502 3442947 -147340606 + LTR7 LTR ERV1 1 448 -2 2137 82 7 0 chr11 3443737 3444007 -147339546 - L1PA6 LINE L1 -4 6150 5879 189 368 9 19 chr11 3444661 3444767 -147338786 - L2 LINE L2 -1024 2290 2186 2345 83 0 0 chr11 3445577 3445866 -147337687 + AluSx SINE Alu 1 289 -23 408 321 108 51 chr11 3446240 3446573 -147336980 - L2 LINE L2 -5 3267 2916 325 358 142 11 chr11 3446612 3446886 -147336667 - L2 LINE L2 -452 2862 2553 405 0 0 0 chr11 3447415 3447460 -147336093 + (TG)n Simple_repeat Simple_repeat 2 46 0 22 70 0 0 chr11 3449018 3449061 -147334492 + AT_rich Low_complexity Low_complexity 1 43 0 716 159 38 30 chr11 3449386 3449518 -147334035 + AluJb SINE Alu 2 134 -178 185 211 42 84 chr11 3449797 3449868 -147333685 + MIR SINE MIR 18 85 -123 205 180 16 33 chr11 3451118 3451179 -147332374 + A-rich Low_complexity Low_complexity 5 64 0 327 25 0 0 chr11 3453153 3453193 -147330360 + (TG)n Simple_repeat Simple_repeat 1 40 0 195 42 0 0 chr11 3454308 3454332 -147329221 + (A)n Simple_repeat Simple_repeat 1 24 0 2291 81 0 60 chr11 3454825 3455157 -147328396 - AluSx SINE Alu 0 312 1 301 278 131 34 chr11 3455896 3456072 -147327481 - MIR SINE MIR -51 211 19 1787 75 13 0 chr11 3456435 3456662 -147326891 - AluSq SINE Alu -10 303 74 2140 88 35 7 chr11 3456895 3457178 -147326375 - AluY SINE Alu -20 291 1 307 357 27 37 chr11 3458555 3459039 -147324514 + L1MC4 LINE L1 5378 5856 -265 2010 305 88 28 chr11 3459693 3460632 -147322921 - MER110-int LTR ERV1 -1683 2964 1969 2395 131 11 3 chr11 3460638 3460996 -147322557 + L1PA13 LINE L1 5798 6158 -5 4348 155 33 1 chr11 3461422 3462767 -147320786 + L1PB1 LINE L1 4400 5792 -359 186 125 0 54 chr11 3462767 3462823 -147320730 + (TA)n Simple_repeat Simple_repeat 2 54 0 2422 119 28 0 chr11 3462823 3463176 -147320377 + L1PB1 LINE L1 5782 6144 -7 24 0 0 0 chr11 3463186 3463210 -147320343 + AT_rich Low_complexity Low_complexity 1 24 0 68 42 0 0 chr11 3463926 3464022 -147319531 + AT_rich Low_complexity Low_complexity 1 96 0 2260 107 0 0 chr11 3464039 3464338 -147319215 + AluSx SINE Alu 1 299 -13 3164 231 32 14 chr11 3464398 3465179 -147318374 + L1MC4a LINE L1 5255 6049 -1759 6310 205 55 59 chr11 3465723 3466279 -147317274 + L1MC4 LINE L1 6041 6598 -1444 207 100 0 0 chr11 3466279 3466309 -147317244 + (TAGG)n Simple_repeat Simple_repeat 2 31 0 6310 205 55 59 chr11 3466309 3466738 -147316815 + L1MC4 LINE L1 6598 7027 -1015 543 101 0 0 chr11 3466738 3466817 -147316736 + (TGGA)n Simple_repeat Simple_repeat 3 81 0 6310 205 55 59 chr11 3466817 3467742 -147315811 + L1MC4 LINE L1 7027 8041 -1 445 165 156 55 chr11 3468403 3468512 -147315041 + FRAM SINE Alu 46 165 -11 2257 103 3 0 chr11 3470579 3470870 -147312683 - AluSg SINE Alu -18 292 1 793 223 78 18 chr11 3470872 3471038 -147312515 - AluJo SINE Alu -17 295 120 887 227 38 55 chr11 3471469 3471707 -147311846 + L1MEc LINE L1 37 270 -6126 * 1552 205 79 79 chr11 3471703 3471746 -147311807 + L1MEc LINE L1 1942 1984 -4231 377 104 117 13 chr11 3471746 3471823 -147311730 - L1PA4 LINE L1 0 6155 6071 1552 205 79 79 chr11 3471823 3471842 -147311711 + L1MEc LINE L1 1984 2002 -4213 2090 145 0 0 chr11 3471842 3472138 -147311415 + AluSx SINE Alu 1 296 -16 1552 205 79 79 chr11 3472138 3472826 -147310727 + L1MEc LINE L1 2002 2659 -3556 2190 128 16 0 chr11 3472826 3473132 -147310421 + AluSx SINE Alu 1 311 -1 1552 205 79 79 chr11 3473132 3473150 -147310403 + L1MEc LINE L1 2659 2676 -3539 938 155 31 0 chr11 3473214 3473375 -147310178 - L1PA11 LINE L1 -921 5225 5060 6687 93 23 1 chr11 3473375 3474322 -147309231 + L1PA11 LINE L1 5208 6174 0 1086 226 62 21 chr11 3474325 3474661 -147308892 + L1MEc LINE L1 2683 3032 -3183 1176 278 87 4 chr11 3474901 3475462 -147308091 + L1MEc LINE L1 3011 3618 -2597 4068 170 82 11 chr11 3475594 3475606 -147307947 - MER6 DNA MER2_type -29 836 826 1898 103 14 21 chr11 3475606 3475887 -147307666 - AluSq SINE Alu -30 283 5 4068 170 82 11 chr11 3475887 3476632 -147306921 - MER6 DNA MER2_type -39 826 20 2085 129 0 22 chr11 3476632 3476943 -147306610 + AluJb SINE Alu 1 304 -8 4068 170 82 11 chr11 3476943 3476965 -147306588 - MER6 DNA MER2_type -845 20 1 674 86 0 38 chr11 3477078 3477141 -147306412 - MER6 DNA MER2_type -189 676 617 1936 144 10 3 chr11 3477141 3477432 -147306121 + AluSx SINE Alu 1 293 -19 674 86 0 38 chr11 3477432 3477473 -147306080 - MER6 DNA MER2_type -248 617 576 376 268 98 49 chr11 3477706 3478012 -147305541 - MER20B DNA MER1_type -195 588 268 313 313 26 62 chr11 3479228 3479423 -147304130 - MIR SINE MIR -7 255 68 27 0 0 0 chr11 3479474 3479501 -147304052 + AT_rich Low_complexity Low_complexity 1 27 0 22 56 0 0 chr11 3479909 3479945 -147303608 + AT_rich Low_complexity Low_complexity 1 36 0 361 290 67 60 chr11 3480253 3480536 -147303017 - MER65A LTR ERV1 0 445 161 281 301 52 15 chr11 3480643 3480779 -147302774 - MER65B LTR ERV1 -390 141 1 189 322 43 52 chr11 3481047 3481162 -147302391 - L2 LINE L2 -1834 1480 1367 240 283 167 43 chr11 3481379 3481793 -147301760 - L2 LINE L2 -2211 1103 639 9704 65 16 82 chr11 3482508 3483991 -147299562 - SVA Other Other 0 1386 1 1256 120 0 22 chr11 3483996 3484179 -147299374 - AluSg/x SINE Alu -12 300 122 267 255 0 32 chr11 3484311 3484405 -147299148 - MLT1H LTR MaLR -378 171 81 502 301 59 0 chr11 3484474 3484627 -147298926 + L1MC3 LINE L1 5453 5614 -2194 959 185 5 37 chr11 3484638 3484827 -147298726 - AluJo SINE Alu -129 183 1 443 278 53 47 chr11 3484883 3485221 -147298332 + L1MDa LINE L1 1421 1760 -4780 * 1978 205 58 42 chr11 3485220 3485767 -147297786 + L1MC3 LINE L1 6675 7230 -555 256 261 45 23 chr11 3485769 3485857 -147297696 + MER65A LTR ERV1 52 141 -304 366 291 65 38 chr11 3485977 3486238 -147297315 + MER65A LTR ERV1 175 442 -3 26 0 0 0 chr11 3486802 3486828 -147296725 + AT_rich Low_complexity Low_complexity 1 26 0 326 308 26 62 chr11 3486879 3487074 -147296479 + MIR SINE MIR 68 255 -7 1855 130 16 16 chr11 3487542 3487864 -147295689 - L1 LINE L1 -908 5238 4917 595 196 0 0 chr11 3487864 3487956 -147295597 - MER2 DNA MER2_type -252 93 2 355 292 10 0 chr11 3487964 3488060 -147295493 + MIR SINE MIR 163 259 -3 670 171 137 0 chr11 3488093 3488210 -147295343 + FLAM_C SINE Alu 1 133 0 4876 146 58 16 chr11 3489768 3490704 -147292849 + L1MA8 LINE L1 5315 6289 -2 366 345 77 5 chr11 3493688 3493897 -147289656 - MIR SINE MIR -5 257 34 636 250 48 30 chr11 3495522 3495865 -147287688 - L1MDa LINE L1 -4811 1571 1173 740 256 26 42 chr11 3495872 3496074 -147287479 - L1MC/D LINE L1 -605 5561 5443 523 273 125 30 chr11 3496088 3496352 -147287201 + MLT1H LTR MaLR 17 305 -244 273 283 81 30 chr11 3496389 3496488 -147287065 + L2 LINE L2 3205 3308 -5 2293 83 7 0 chr11 3496715 3497004 -147286549 + AluSq SINE Alu 1 291 -22 3807 164 45 10 chr11 3497327 3498045 -147285508 - L1MA8 LINE L1 -3 6288 5546 21 0 0 0 chr11 3498324 3498345 -147285208 + AT_rich Low_complexity Low_complexity 1 21 0 32 0 0 0 chr11 3498457 3498489 -147285064 + AT_rich Low_complexity Low_complexity 1 32 0 239 246 27 27 chr11 3498589 3498699 -147284854 + L1ME LINE L1 5677 5786 -376 199 194 83 69 chr11 3498727 3498799 -147284754 - L2 LINE L2 -5 3308 3236 596 228 10 56 chr11 3498819 3499016 -147284537 + L1MA9 LINE L1 6095 6282 -30 212 333 69 0 chr11 3500109 3500196 -147283357 + MIR SINE MIR 30 122 -86 255 176 39 0 chr11 3500231 3500282 -147283271 - MER58A DNA MER1_type -1 223 171 656 238 0 0 chr11 3500295 3500417 -147283136 - MER58A DNA MER1_type 0 122 1 234 0 0 0 chr11 3500849 3500875 -147282678 + (TG)n Simple_repeat Simple_repeat 2 27 0 217 254 90 15 chr11 3500884 3500951 -147282602 - MIR SINE MIR -190 72 1 251 250 204 0 chr11 3501080 3501188 -147282365 + MIR SINE MIR 69 198 -64 207 339 43 0 chr11 3501508 3501623 -147281930 - L2 LINE L2 -1668 1646 1527 354 307 66 48 chr11 3501817 3501983 -147281570 + MIR SINE MIR 55 223 -39 218 342 34 68 chr11 3501983 3502249 -147281304 + L2 LINE L2 2624 2880 -434 200 368 28 28 chr11 3502741 3502847 -147280706 - MIR SINE MIR -67 141 36 333 0 0 0 chr11 3503988 3504025 -147279528 + (T)n Simple_repeat Simple_repeat 1 37 0 293 274 87 18 chr11 3504123 3504242 -147279311 + MIR SINE MIR 3 130 -78 1505 194 48 50 chr11 3505649 3506045 -147277508 - MLT2C1 LTR ERVL -2 395 1 338 185 15 0 chr11 3506069 3506134 -147277419 - L1 LINE L1 -1092 5054 4989 30 27 0 0 chr11 3506271 3506308 -147277245 + AT_rich Low_complexity Low_complexity 1 37 0 825 180 24 120 chr11 3506868 3507118 -147276435 - LTR8A LTR ERV1 -468 259 34 1849 125 42 0 chr11 3507130 3507417 -147276136 - L1PA16 LINE L1 -5 6161 5863 767 288 132 20 chr11 3507475 3507878 -147275675 - L1ME4a LINE L1 -217 5904 5457 27 0 0 0 chr11 3509613 3509640 -147273913 + AT_rich Low_complexity Low_complexity 1 27 0 1759 110 98 0 chr11 3512297 3512579 -147270974 + AluSp SINE Alu 4 310 0 245 220 20 0 chr11 3512706 3512756 -147270797 - MIR3 SINE MIR -7 201 151 258 270 16 0 chr11 3512758 3512821 -147270732 - MER113 DNA MER1_type? -4 517 454 297 128 0 0 chr11 3513369 3513416 -147270137 + (CA)n Simple_repeat Simple_repeat 2 48 0 7011 124 20 8 chr11 3515241 3516942 -147266611 + L1MA3 LINE L1 4583 6305 0 231 132 0 57 chr11 3516950 3517003 -147266550 + (TAAAAA)n Simple_repeat Simple_repeat 2 51 0 2234 102 0 0 chr11 3517005 3517310 -147266243 + AluSx SINE Alu 1 305 0 180 152 0 0 chr11 3517705 3517738 -147265815 + (TATG)n Simple_repeat Simple_repeat 2 34 0 224 235 0 44 chr11 3518423 3518491 -147265062 + G-rich Low_complexity Low_complexity 6 70 0 22 0 0 0 chr11 3519003 3519025 -147264528 + AT_rich Low_complexity Low_complexity 1 22 0 6518 114 26 48 chr11 3519062 3520408 -147263145 - L1MA3 LINE L1 0 6305 4987 * 7209 54 13 1 chr11 3520382 3521506 -147262047 - L1PA5 LINE L1 -2 6152 5018 367 0 0 0 chr11 3521506 3521547 -147262006 + L1P LINE L1 1264 1304 -4842 * 19967 111 15 30 chr11 3521544 3525453 -147258100 + L1PA7 LINE L1 252 4182 -2279 616 122 0 0 chr11 3525454 3525552 -147258001 - L1P LINE L1 -2793 3353 3256 * 43128 51 8 1 chr11 3525546 3531663 -147251890 - L1PA4 LINE L1 -4 6151 1 517 146 39 0 chr11 3531670 3531773 -147251780 - L1P LINE L1 -2889 3257 3151 11397 78 29 16 chr11 3531773 3534040 -147249513 + L1PA7 LINE L1 4185 6465 -4 227 316 13 0 chr11 3534112 3534191 -147249362 - MIR SINE MIR -110 152 73 1985 181 16 8 chr11 3535249 3535619 -147247934 + L1MD3 LINE L1 7623 7995 0 2520 78 0 0 chr11 3536312 3536620 -147246933 - AluY SINE Alu -3 308 1 575 315 50 0 chr11 3537557 3537738 -147245815 - MIR SINE MIR -65 197 8 231 167 0 0 chr11 3538008 3538050 -147245503 + (TCTA)n Simple_repeat Simple_repeat 3 44 0 357 186 36 14 chr11 3539067 3539207 -147244346 + (TCTA)n Simple_repeat Simple_repeat 2 144 0 3282 237 60 10 chr11 3540049 3540911 -147242642 + L1ME3A LINE L1 5258 6162 -8 318 322 67 52 chr11 3542041 3542308 -147241245 + MARNA DNA Mariner 280 550 -36 527 242 8 8 chr11 3544402 3544526 -147239027 + L2 LINE L2 3187 3310 -3 556 251 70 20 chr11 3546175 3546347 -147237206 + MIR SINE MIR 41 217 -45 1647 85 55 4 chr11 3547427 3547663 -147235890 - L1MA1 LINE L1 0 6302 6055 557 283 108 14 chr11 3547713 3547859 -147235694 + L2 LINE L2 1783 1914 -1400 2301 156 27 16 chr11 3547859 3548230 -147235323 - THE1C LTR MaLR 0 375 1 557 283 108 14 chr11 3548230 3548369 -147235184 + L2 LINE L2 1914 2095 -1219 905 157 42 15 chr11 3548589 3548896 -147234657 + THE1C LTR MaLR 1 375 0 1445 221 60 38 chr11 3548936 3549302 -147234251 - MLT1A2 LTR MaLR 0 374 1 360 383 43 0 chr11 3550837 3551072 -147232481 + LTR16A LTR ERVL 206 450 0 916 99 14 14 chr11 3552239 3552380 -147231173 + AluSp SINE Alu 1 141 -172 5302 133 22 107 chr11 3552506 3553631 -147229922 + L1P LINE L1 347 1376 -4770 2576 195 42 7 chr11 3554217 3554673 -147228880 + MER70A LTR ERVL 1 472 0 1042 149 80 0 chr11 3554992 3555180 -147228373 - L1P LINE L1 -2093 4053 3851 * 6146 175 42 12 chr11 3555177 3555772 -147227781 + L1P LINE L1 4032 4607 -1539 544 150 0 0 chr11 3555772 3555852 -147227701 + MADE1 DNA Mariner 1 80 0 6146 175 42 12 chr11 3555852 3556185 -147227368 + L1P LINE L1 4607 4928 -1218 1924 40 9 4 chr11 3556185 3556401 -147227152 + L1PA5 LINE L1 5919 6146 -8 6146 175 42 12 chr11 3556401 3556675 -147226878 + L1P LINE L1 4928 5272 -874 1496 224 55 33 chr11 3557159 3557525 -147226028 - MLT1A2 LTR MaLR 0 374 1 280 275 83 33 chr11 3557805 3557925 -147225628 + LTR16A1 LTR ERVL 330 455 -2 1992 242 92 70 chr11 3558602 3559339 -147224214 + L1MB8 LINE L1 3059 3779 -2367 2020 125 0 0 chr11 3559339 3559620 -147223933 + AluSx SINE Alu 32 312 0 1992 242 92 70 chr11 3559620 3559851 -147223702 + L1MB8 LINE L1 3779 4004 -2142 465 148 34 23 chr11 3559851 3559939 -147223614 + L1MA10 LINE L1 6238 6326 -8 1992 242 92 70 chr11 3559939 3559950 -147223603 + L1MB8 LINE L1 4004 4013 -2133 3396 185 28 17 chr11 3559950 3560641 -147222912 + L1MB8 LINE L1 5481 6178 0 1992 242 92 70 chr11 3560641 3560725 -147222828 + L1MB8 LINE L1 4013 4147 -1999 525 280 63 5 chr11 3560733 3560922 -147222631 + L1ME2 LINE L1 4579 4778 -1368 1314 237 188 26 chr11 3560939 3561202 -147222351 + L1ME2 LINE L1 4856 5075 -1089 1614 151 3 69 chr11 3561202 3561521 -147222032 + AluJb SINE Alu 1 298 -14 1314 237 188 26 chr11 3561521 3562267 -147221286 + L1ME2 LINE L1 5075 6087 -77 1670 137 78 18 chr11 3562267 3562551 -147221002 - AluJo SINE Alu -11 301 1 1314 237 188 26 chr11 3562551 3562644 -147220909 + L1ME2 LINE L1 6087 6164 0 236 288 17 0 chr11 3562960 3563019 -147220534 + L2 LINE L2 3196 3255 -17 1098 219 44 9 chr11 3563316 3563544 -147220009 - MER8 DNA MER2_type -3 236 1 23 33 0 0 chr11 3565627 3565657 -147217896 + AT_rich Low_complexity Low_complexity 1 30 0 425 250 43 43 chr11 3567959 3568123 -147215430 + MIR SINE MIR 23 186 -76 992 103 122 0 chr11 3568716 3568872 -147214681 - MER30 DNA MER1_type -55 175 1 264 315 0 0 chr11 3568945 3569037 -147214516 + MIR SINE MIR 167 258 -4 371 323 65 26 chr11 3569050 3569205 -147214348 - L2 LINE L2 -8 3264 3104 237 304 244 7 chr11 3569521 3569656 -147213897 + MIR SINE MIR 83 249 -13 421 277 62 28 chr11 3570283 3570460 -147213093 - L2 LINE L2 -8 3305 3123 1254 161 70 21 chr11 3570461 3570703 -147212850 + L1M2 LINE L1 5459 5712 -579 4361 144 57 32 chr11 3570715 3571048 -147212505 + L1MA8 LINE L1 5458 5781 -510 216 0 0 0 chr11 3571048 3571072 -147212481 + (CA)n Simple_repeat Simple_repeat 1 24 0 4361 144 57 32 chr11 3571072 3571551 -147212002 + L1MA8 LINE L1 5781 6290 -1 1154 304 82 25 chr11 3571557 3572356 -147211197 - L2 LINE L2 -179 3134 2292 7156 46 17 2 chr11 3572361 3573257 -147210296 - L1PA5 LINE L1 -1027 5119 4211 7803 46 3 1 chr11 3573257 3574275 -147209278 + L1PA5 LINE L1 5136 6152 -2 253 157 229 29 chr11 3574275 3574345 -147209208 - MER5A DNA MER1_type -97 92 9 192 77 0 0 chr11 3574385 3574411 -147209142 + (A)n Simple_repeat Simple_repeat 1 26 0 394 259 299 11 chr11 3574413 3574687 -147208866 - L2 LINE L2 -1028 2286 1934 1222 134 24 14 chr11 3574691 3574900 -147208653 + L1PB1 LINE L1 5941 6151 0 1959 190 61 10 chr11 3574914 3575599 -147207954 + L1M3 LINE L1 4898 5614 -566 228 220 125 56 chr11 3576091 3576253 -147207300 - MIR SINE MIR -70 192 17 570 147 0 40 chr11 3576414 3576564 -147206989 + (AGGGGG)n Simple_repeat Simple_repeat 5 148 0 1400 166 14 0 chr11 3577752 3577975 -147205578 + MER1B DNA MER1_type 1 226 -71 1072 124 16 32 chr11 3578929 3579114 -147204439 + L1PA13 LINE L1 5982 6163 0 600 63 13 0 chr11 3579590 3579669 -147203884 - MADE1 DNA Mariner 0 80 1 1056 294 95 27 chr11 3579884 3580485 -147203068 - L2 LINE L2 -422 2892 2251 205 191 16 48 chr11 3580545 3580608 -147202945 + GA-rich Low_complexity Low_complexity 5 65 0 314 329 72 6 chr11 3580619 3580786 -147202767 - L2 LINE L2 -1424 1890 1713 291 397 49 0 chr11 3583640 3583824 -147199729 - L3 LINE CR1 -61 1516 1324 3591 166 68 7 chr11 3584542 3585261 -147198292 - L1MA4 LINE L1 -11 6289 5527 3839 122 28 18 chr11 3585261 3585868 -147197685 + MER50-int LTR ERV1 6591 7203 -2 2533 185 41 126 chr11 3585868 3586485 -147197068 + MER50 LTR ERV1 10 549 -185 2029 152 3 0 chr11 3586485 3586794 -147196759 - AluSx SINE Alu 0 312 3 2533 185 41 126 chr11 3586794 3586955 -147196598 + MER50 LTR ERV1 549 722 -12 1374 174 123 119 chr11 3586995 3587540 -147196013 + LTR10B LTR ERV1 1 547 0 7321 250 41 28 chr11 3587540 3592382 -147191171 + LTR10B-int LTR ERV1 5 3922 -2727 803 174 48 48 chr11 3592391 3592558 -147190995 - LTR5 LTR ERVK -14 955 789 598 174 0 109 chr11 3592602 3592740 -147190813 - HERVKC4 LTR ERVK -4526 736 614 * 4039 172 20 6 chr11 3592710 3593412 -147190141 - HERVKC4 LTR ERVK -6531 712 1 3623 204 21 63 chr11 3593424 3594417 -147189136 - LTR5 LTR ERVK -14 955 5 3898 277 13 17 chr11 3594419 3595487 -147188066 + LTR10B-int LTR ERV1 4941 6004 -1781 6539 239 30 27 chr11 3595537 3597189 -147186364 + LTR10B-int LTR ERV1 4994 6649 0 338 153 68 126 chr11 3597243 3597433 -147186120 + LTR10B LTR ERV1 107 285 -262 1319 174 41 16 chr11 3597492 3597734 -147185819 + LTR10B LTR ERV1 300 547 0 4234 236 117 92 chr11 3597735 3598322 -147185231 + MSTC-int LTR MaLR 76 647 -1088 3743 158 49 29 chr11 3598322 3598980 -147184573 + LTR51 LTR ERV1 1 671 0 4234 236 117 92 chr11 3598980 3600010 -147183543 + MSTC-int LTR MaLR 647 1733 -2 2224 146 72 46 chr11 3600017 3600434 -147183119 + MSTC LTR MaLR 1 428 0 184 333 36 12 chr11 3602317 3602401 -147181152 - L2 LINE L2 -36 3277 3192 447 327 146 16 chr11 3602769 3603139 -147180414 - L2 LINE L2 -640 2674 2257 1581 294 153 59 chr11 3603238 3604504 -147179049 + L2 LINE L2 1614 2987 -285 289 297 156 23 chr11 3605361 3605617 -147177936 - L2 LINE L2 -1160 2154 1865 2138 91 0 0 chr11 3605854 3606141 -147177412 + AluY SINE Alu 1 287 -24 202 193 91 57 chr11 3606198 3606286 -147177267 - MIR SINE MIR -78 184 94 543 222 0 128 chr11 3606999 3607233 -147176320 + MER3 DNA MER1_type 1 204 -5 359 323 63 26 chr11 3609119 3609308 -147174245 - L3 LINE CR1 -59 1518 1323 2043 189 27 5 chr11 3609733 3610108 -147173445 + MLT1B LTR MaLR 3 385 -5 2700 184 107 23 chr11 3610111 3610627 -147172926 + MLT1B-int LTR MaLR 5 678 -693 2186 157 18 32 chr11 3610627 3611061 -147172492 + L1MA5 LINE L1 5868 6295 -5 2700 184 107 23 chr11 3611061 3611232 -147172321 + MLT1B-int LTR MaLR 678 833 -538 1469 212 119 11 chr11 3611522 3611876 -147171677 + MLT1B-int LTR MaLR 978 1369 -2 1746 153 150 23 chr11 3611878 3612224 -147171329 + MLT1B LTR MaLR 1 390 0 674 273 73 78 chr11 3613115 3613473 -147170080 + L2 LINE L2 2433 2790 -524 1256 144 158 78 chr11 3613473 3613820 -147169733 + THE1C LTR MaLR 1 375 0 674 273 73 78 chr11 3613820 3613845 -147169708 + L2 LINE L2 2790 2814 -500 346 306 51 25 chr11 3614073 3614269 -147169284 + L1MEc LINE L1 1620 1820 -4576 194 313 50 0 chr11 3616053 3616133 -147167420 - L2 LINE L2 -679 2635 2552 584 297 71 53 chr11 3617169 3617580 -147165973 - L2 LINE L2 -635 2679 2262 2086 301 154 32 chr11 3617682 3617773 -147165780 + L2 LINE L2 1601 1680 -1634 372 22 0 0 chr11 3617773 3617818 -147165735 + (CA)n Simple_repeat Simple_repeat 2 46 0 2086 301 154 32 chr11 3617818 3618953 -147164600 + L2 LINE L2 1680 2977 -337 308 336 107 24 chr11 3619843 3620179 -147163374 - L2 LINE L2 -1240 2074 1711 187 304 83 48 chr11 3620256 3620424 -147163129 - MIR SINE MIR -38 224 51 222 322 33 0 chr11 3620671 3620761 -147162792 - MIR SINE MIR -18 244 152 30 69 0 0 chr11 3620761 3620819 -147162734 + AT_rich Low_complexity Low_complexity 1 58 0 506 246 222 0 chr11 3621147 3621318 -147162235 + MER3 DNA MER1_type 1 209 0 1719 164 134 3 chr11 3623612 3623704 -147159849 + MER7A DNA MER2_type 3 82 -2956 776 98 98 8 chr11 3623704 3623827 -147159726 - L1PA13 LINE L1 -5 6158 6025 1719 164 134 3 chr11 3623827 3624039 -147159514 + MER7A DNA MER2_type 82 345 -1 338 264 74 31 chr11 3624058 3624221 -147159332 + MLT1I LTR MaLR 1 170 -239 4118 148 26 6 chr11 3624221 3624884 -147158669 + L1PA13 LINE L1 5482 6157 -6 767 119 0 9 chr11 3624977 3625086 -147158467 + L1PA13 LINE L1 5777 5884 -279 235 257 14 57 chr11 3625086 3625156 -147158397 + MLT1I LTR MaLR 177 243 -166 21 36 0 0 chr11 3625220 3625248 -147158305 + AT_rich Low_complexity Low_complexity 1 28 0 392 237 44 51 chr11 3625344 3625472 -147158081 + MLT1I LTR MaLR 278 439 -11 6939 117 26 16 chr11 3625690 3626687 -147156866 - LTR13 LTR ERVK 0 1007 1 7440 227 14 12 chr11 3626687 3628980 -147154573 - HERVK13 LTR ERVK 0 8116 5812 3715 231 126 12 chr11 3628974 3629939 -147153614 - HERVK13 LTR ERVK -2473 5643 4569 * 555 289 6 0 chr11 3629929 3630088 -147153465 - HERVK13 LTR ERVK -3990 4126 3967 * 1150 208 73 118 chr11 3630093 3630710 -147152843 - HERVK13 LTR ERVK -6814 1302 714 926 119 15 0 chr11 3630723 3630857 -147152696 - HERVK13 LTR ERVK -7907 209 74 906 179 0 6 chr11 3631085 3631247 -147152306 - L1P LINE L1 -1132 5014 4854 2223 162 65 25 chr11 3631254 3631698 -147151855 - L1MA8 LINE L1 -345 6967 6506 * 8671 220 112 28 chr11 3631675 3631895 -147151658 - L1MA8 LINE L1 -1431 5736 5536 2230 78 7 46 chr11 3631895 3632201 -147151352 - AluY SINE Alu -17 294 1 8671 220 112 28 chr11 3632201 3632687 -147150866 - L1MA8 LINE L1 -1631 5536 5093 1805 143 7 7 chr11 3632687 3632973 -147150580 - AluJb SINE Alu -15 297 12 8671 220 112 28 chr11 3632973 3636346 -147147207 - L1MA8 LINE L1 -2074 5093 1622 285 185 87 0 chr11 3637353 3637445 -147146108 + Charlie2 DNA MER1_type 2690 2789 -73 2254 198 105 7 chr11 3638486 3638916 -147144637 + MER70A LTR ERVL 1 472 0 1041 140 91 0 chr11 3639235 3639421 -147144132 - L1PA12 LINE L1 -2093 4053 3851 * 5228 151 51 7 chr11 3639418 3640010 -147143543 + L1PA12 LINE L1 4032 4681 -1465 507 175 0 0 chr11 3640010 3640090 -147143463 + MADE1 DNA Mariner 1 80 0 5228 151 51 7 chr11 3640090 3640423 -147143130 + L1PA12 LINE L1 4681 4998 -1148 2014 43 4 0 chr11 3640423 3640642 -147142911 + L1PA5 LINE L1 5919 6149 -5 5981 92 68 2 chr11 3640666 3641748 -147141805 + L1PA12 LINE L1 5020 6164 -4 1191 293 82 25 chr11 3642627 3643184 -147140369 - MLT2F LTR ERVL 0 628 7 217 306 197 0 chr11 3645221 3645404 -147138149 - MIR SINE MIR -30 232 14 946 110 0 0 chr11 3647749 3647876 -147135677 + L1PA14 LINE L1 6023 6149 -12 1767 113 13 0 chr11 3649831 3650070 -147133483 - AluSc SINE Alu -16 293 52 233 277 0 15 chr11 3651128 3651193 -147132360 + MIR SINE MIR 88 151 -111 423 0 0 0 chr11 3651600 3651647 -147131906 + (TG)n Simple_repeat Simple_repeat 2 48 0 190 250 73 15 chr11 3651880 3651948 -147131605 + MIR SINE MIR 123 194 -68 1505 113 50 4 chr11 3653118 3653378 -147130175 - L1PA8A LINE L1 -465 5666 5469 2657 112 32 10 chr11 3653399 3653802 -147129751 - L1PA8 LINE L1 -7 6165 5754 1092 242 125 50 chr11 3653802 3654219 -147129334 + MLT2B1 LTR ERVL 72 519 -1 312 182 91 0 chr11 3655101 3655167 -147128386 + L1MEc LINE L1 2312 2383 -4013 14761 178 103 47 chr11 3655229 3656879 -147126674 + L1MA1 LINE L1 16 1572 -5993 559 153 41 0 chr11 3656879 3656977 -147126576 + AluSg/x SINE Alu 211 312 0 14761 178 103 47 chr11 3656977 3658325 -147125228 + L1MA1 LINE L1 1572 2843 -4722 2495 117 45 17 chr11 3658325 3658677 -147124876 + THE1B LTR MaLR 1 362 -2 14761 178 103 47 chr11 3658677 3658853 -147124700 + L1MA1 LINE L1 2843 3008 -4557 2016 132 10 3 chr11 3658853 3659149 -147124404 + AluSx SINE Alu 1 298 -14 14761 178 103 47 chr11 3659149 3659839 -147123714 + L1MA1 LINE L1 3008 3658 -3907 1786 236 126 37 chr11 3659839 3660348 -147123205 + MLT2B3 LTR ERVL 1 554 0 14761 178 103 47 chr11 3660348 3660654 -147122899 + L1MA1 LINE L1 3658 4517 -3048 1423 129 62 17 chr11 3660623 3661013 -147122540 + L1MA1 LINE L1 6673 7044 -677 * 1843 153 81 36 chr11 3661013 3661372 -147122181 + THE1C LTR MaLR 1 375 0 1423 129 62 17 chr11 3661372 3661927 -147121626 + L1MA1 LINE L1 7044 7721 0 714 251 100 39 chr11 3661934 3662344 -147121209 + L1MEc LINE L1 2380 2814 -3401 256 188 50 38 chr11 3662361 3662441 -147121112 - L1 LINE L1 -2635 3511 3431 2088 263 91 12 chr11 3662447 3663268 -147120285 - L1P LINE L1 -2762 3384 2499 949 201 51 55 chr11 3663274 3663331 -147120222 + L1MA9 LINE L1 5512 5568 -744 1305 179 236 23 chr11 3663331 3663682 -147119871 - MSTA LTR MaLR -2 426 1 949 201 51 55 chr11 3663682 3663898 -147119655 + L1MA9 LINE L1 5568 5784 -528 949 228 166 13 chr11 3663902 3664288 -147119265 + L1MA9 LINE L1 5825 6269 -43 36372 93 21 17 chr11 3664374 3667648 -147115905 + L1PA6 LINE L1 2 3315 -2839 2392 90 0 3 chr11 3667648 3667959 -147115594 + AluY SINE Alu 2 311 0 36372 93 21 17 chr11 3667959 3670807 -147112746 + L1PA6 LINE L1 3315 6150 -4 239 325 136 31 chr11 3670963 3671154 -147112399 - L2 LINE L2 -2728 586 376 205 337 51 10 chr11 3671308 3671406 -147112147 + MIR SINE MIR 66 167 -95 828 191 82 0 chr11 3671407 3671554 -147111999 + FRAM SINE Alu 1 151 -25 2792 157 29 15 chr11 3671608 3672087 -147111466 + L1PB2 LINE L1 5663 6148 -3 289 300 20 30 chr11 3673625 3673725 -147109828 - MIR SINE MIR -140 122 24 23 0 0 0 chr11 3674683 3674706 -147108847 + AT_rich Low_complexity Low_complexity 1 23 0 182 376 116 29 chr11 3674719 3675065 -147108488 - L2 LINE L2 -41 3231 2856 692 266 71 38 chr11 3676180 3676610 -147106943 - LTR33 LTR ERVL -40 481 10 340 299 111 7 chr11 3680068 3680212 -147103341 - MIR SINE MIR -76 186 28 534 299 117 28 chr11 3681229 3681587 -147101966 + LTR16B LTR ERVL 15 404 -60 7177 28 14 29 chr11 3681624 3682982 -147100571 - L1PA4 LINE L1 -3 6152 4789 257 339 112 13 chr11 3683006 3683239 -147100314 + HERV16 LTR ERVL 313 568 -4428 305 252 73 24 chr11 3683338 3683461 -147100092 + HERV16 LTR ERVL 719 847 -4149 1906 140 107 6 chr11 3683493 3683821 -147099732 + LTR1B LTR ERV1 44 404 -422 1023 224 38 0 chr11 3683818 3684028 -147099525 + LTR1B LTR ERV1 599 816 -10 * 2460 216 67 34 chr11 3684030 3684586 -147098967 + HUERS-P2 LTR ERV1 2 575 -2513 * 13333 146 55 49 chr11 3684583 3686957 -147096596 + HUERS-P2 LTR ERV1 701 3088 0 4476 152 58 14 chr11 3686957 3687740 -147095813 + LTR1B LTR ERV1 1 817 -9 334 364 94 19 chr11 3687919 3688227 -147095326 + HERV16 LTR ERVL 1246 1576 -3420 396 303 98 0 chr11 3688398 3688530 -147095023 + HERV16 LTR ERVL 1854 1998 -2998 1294 319 91 20 chr11 3688759 3689794 -147093759 + HERV16 LTR ERVL 2543 3654 -2000 503 349 53 11 chr11 3689813 3690094 -147093459 + HERV16 LTR ERVL 3400 3692 -1304 692 319 85 54 chr11 3690112 3690943 -147092610 + HERV16 LTR ERVL 4017 4906 -612 348 283 87 91 chr11 3690998 3691492 -147092061 + HERV16 LTR ERVL 4505 4996 0 739 307 101 4 chr11 3691492 3691769 -147091784 + LTR16B LTR ERVL 1 304 -160 27312 126 40 61 chr11 3692067 3698384 -147085169 + L1PA8 LINE L1 1 6169 -3 412 195 62 70 chr11 3699155 3699283 -147084270 + MER34B LTR ERV1 5 131 -434 370 177 177 10 chr11 3699516 3699612 -147083941 + MER34B LTR ERV1 450 561 -4 1815 120 106 0 chr11 3700384 3700659 -147082894 - AluSp SINE Alu -9 304 1 3380 137 131 17 chr11 3701034 3701727 -147081826 - MER4E LTR ERV1 -7 772 1 1205 128 11 6 chr11 3701901 3702081 -147081472 + LTR1B LTR ERV1 1 181 -645 2762 120 84 50 chr11 3702436 3702961 -147080592 + LTR1B LTR ERV1 282 824 -2 1029 276 138 58 chr11 3703701 3704432 -147079121 + HERV16 LTR ERVL 1841 2630 -2366 338 215 25 13 chr11 3704469 3704548 -147079005 + MER3 DNA MER1_type 29 108 -101 1162 244 95 15 chr11 3705416 3705817 -147077736 - L1 LINE L1 -3389 2757 2325 586 217 151 7 chr11 3705984 3706136 -147077417 + MLT1A1 LTR MaLR 1 174 -191 713 162 184 11 chr11 3706693 3706872 -147076681 - L1PB4 LINE L1 -4 6152 5943 1003 159 19 0 chr11 3707402 3707559 -147075994 - AluSp SINE Alu -17 296 137 2165 117 7 3 chr11 3707559 3707858 -147075695 - AluSc SINE Alu -9 300 1 220 216 0 0 chr11 3708418 3708469 -147075084 + A-rich Low_complexity Low_complexity 1 51 0 1834 131 3 11 chr11 3708470 3708752 -147074801 - AluSp SINE Alu -33 280 1 847 329 54 19 chr11 3709919 3710329 -147073224 - LTR16A LTR ERVL 0 450 27 3557 147 65 7 chr11 3710400 3710980 -147072573 - LTR18B LTR ERVL 0 614 1 180 77 0 0 chr11 3711717 3711743 -147071810 + (CA)n Simple_repeat Simple_repeat 1 26 0 362 312 24 0 chr11 3712345 3712470 -147071083 - MLT1F1 LTR MaLR -372 195 68 218 322 91 16 chr11 3714207 3714328 -147069225 + MIR SINE MIR 105 234 -28 22 0 0 0 chr11 3715348 3715370 -147068183 + AT_rich Low_complexity Low_complexity 1 22 0 2023 131 23 7 chr11 3715370 3715676 -147067877 - AluSx SINE Alu -1 311 1 278 225 45 81 chr11 3715843 3715954 -147067599 + L1ME3 LINE L1 6048 6154 -8 259 182 45 34 chr11 3716112 3716200 -147067353 + L1M4 LINE L1 3174 3262 -2884 581 326 38 4 chr11 3717905 3718144 -147065409 - MIR SINE MIR -14 248 2 294 310 39 26 chr11 3721773 3721928 -147061625 + MIR SINE MIR 105 261 -1 240 277 0 96 chr11 3723053 3723147 -147060406 + L1ME3 LINE L1 6046 6130 -32 612 304 78 4 chr11 3725109 3725339 -147058214 - MIR SINE MIR -14 248 2 22 35 0 0 chr11 3726287 3726316 -147057237 + AT_rich Low_complexity Low_complexity 1 29 0 3932 34 0 2 chr11 3728925 3729369 -147054184 + L1PA4 LINE L1 5713 6155 0 257 297 47 0 chr11 3731000 3731064 -147052489 - L2 LINE L2 -51 3221 3155 2331 78 0 3 chr11 3732157 3732452 -147051101 + AluY SINE Alu 1 294 -17 215 330 106 11 chr11 3735992 3736086 -147047467 - MIR SINE MIR -75 133 31 534 204 10 19 chr11 3736619 3736722 -147046831 + MER5A DNA MER1_type 9 110 -79 470 287 139 3 chr11 3736883 3737080 -147046473 - MIR SINE MIR -27 235 15 192 238 71 0 chr11 3737557 3737599 -147045954 + MIR SINE MIR 105 149 -59 367 259 89 30 chr11 3739334 3739469 -147044084 + L2 LINE L2 3129 3271 -1 505 203 62 23 chr11 3739547 3739675 -147043878 - MIR SINE MIR 0 262 130 396 204 29 48 chr11 3740154 3740257 -147043296 + L2 LINE L2 3169 3269 -44 320 244 150 33 chr11 3740485 3740698 -147042855 + HAL1 LINE L1 2270 2507 0 261 0 0 0 chr11 3741657 3741686 -147041867 + (CAAAA)n Simple_repeat Simple_repeat 3 31 0 228 349 66 9 chr11 3742283 3742389 -147041164 - L2 LINE L2 -15 3257 3146 252 0 0 0 chr11 3743699 3743727 -147039826 + (TG)n Simple_repeat Simple_repeat 1 28 0 24 0 0 0 chr11 3744032 3744056 -147039497 + AT_rich Low_complexity Low_complexity 1 24 0 231 227 34 11 chr11 3744192 3744280 -147039273 + T-rich Low_complexity Low_complexity 5 94 0 342 337 59 19 chr11 3744755 3745109 -147038444 - LTR67 LTR ERVL -19 538 137 456 323 45 45 chr11 3745236 3745502 -147038051 + MLT1I LTR MaLR 98 363 -46 275 297 42 34 chr11 3745537 3745655 -147037898 - LTR67 LTR ERVL -437 120 2 1076 48 0 0 chr11 3745946 3746072 -147037481 + L1PA4 LINE L1 6027 6152 -3 22 35 0 0 chr11 3746072 3746101 -147037452 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr11 3746148 3746169 -147037384 + AT_rich Low_complexity Low_complexity 1 21 0 1362 203 22 120 chr11 3746366 3746766 -147036787 - MLT1A1 LTR MaLR 0 365 5 195 375 71 5 chr11 3748381 3748565 -147034988 - L2 LINE L2 -1647 1667 1472 746 284 50 0 chr11 3748699 3748900 -147034653 + LTR16C LTR ERVL 150 360 -131 346 277 134 9 chr11 3748893 3749005 -147034548 + LTR16C LTR ERVL 237 362 -129 * 816 74 0 40 chr11 3749006 3749155 -147034398 + (TCCCC)n Simple_repeat Simple_repeat 3 145 0 20933 94 32 12 chr11 3749257 3752403 -147031150 - L1P LINE L1 -1021 5125 1917 5613 111 15 1 chr11 3752405 3753616 -147029937 + L1PA11 LINE L1 4801 6024 -150 303 190 0 147 chr11 3753619 3753735 -147029818 - LTR57-int LTR ERVL -4211 1132 1034 * 309 187 0 138 chr11 3753636 3753759 -147029794 - MER4-int LTR ERV1 -7021 1099 994 * 506 203 25 131 chr11 3753749 3753985 -147029568 - MER4-int LTR ERV1 -4554 2044 1834 876 236 69 29 chr11 3753985 3754231 -147029322 - MER34C LTR ERV1 -172 413 158 539 231 7 21 chr11 3754231 3754374 -147029179 - MER4-int LTR ERV1 -4132 991 851 2178 164 36 68 chr11 3754491 3754992 -147028561 - MER4-int LTR ERV1 -6705 832 348 2687 127 65 59 chr11 3754998 3755547 -147028006 + LTR9 LTR ERV1 1 766 -28 895 186 5 69 chr11 3755547 3755735 -147027818 + HUERS-P3b LTR ERV1 358 533 -6885 3116 161 63 14 chr11 3755769 3756339 -147027214 + HUERS-P3b LTR ERV1 742 1339 -7580 * 3594 121 0 4 chr11 3756331 3756826 -147026727 + HUERS-P3b LTR ERV1 1532 2024 -5394 1410 48 0 0 chr11 3756823 3756989 -147026564 + HUERS-P3b LTR ERV1 2477 2642 -4776 * 1612 155 49 0 chr11 3756989 3757253 -147026300 - LTR8 LTR ERV1 -250 441 165 376 272 24 0 chr11 3757375 3757500 -147026053 + LTR16C LTR ERVL 364 491 0 270 0 0 0 chr11 3757593 3757623 -147025930 + (T)n Simple_repeat Simple_repeat 1 30 0 2440 130 107 18 chr11 3758133 3758524 -147025029 - MSTA LTR MaLR -2 426 1 366 241 28 35 chr11 3758562 3758703 -147024850 + (CATATA)n Simple_repeat Simple_repeat 6 145 0 200 244 73 49 chr11 3758825 3758907 -147024646 + MIR SINE MIR 95 178 -84 291 304 13 0 chr11 3759118 3759197 -147024356 + L2 LINE L2 3187 3266 -6 1493 109 100 9 chr11 3760232 3760461 -147023092 + L1PB1 LINE L1 5900 6149 -2 801 168 35 0 chr11 3760611 3760754 -147022799 + MER57A LTR ERV1 1 148 -255 9366 24 0 0 chr11 3761109 3762190 -147021363 - L1P LINE L1 -867 5279 4199 3557 21 2 0 chr11 3762185 3762756 -147020797 + L1PA2 LINE L1 5406 6155 0 * 1218 202 32 4 chr11 3763001 3763248 -147020305 + MER57A LTR ERV1 150 403 0 1384 262 17 26 chr11 3763248 3763595 -147019958 + MER57A-int LTR ERV1 1 344 -7193 1114 157 6 0 chr11 3763596 3763768 -147019785 - LTR9 LTR ERV1 0 612 440 9908 104 24 11 chr11 3763790 3764580 -147018973 - HUERS-P3b LTR ERV1 -1733 5685 4867 2130 130 3 10 chr11 3764580 3764887 -147018666 - AluSx SINE Alu -7 305 1 9908 104 24 11 chr11 3764887 3765578 -147017975 - HUERS-P3b LTR ERV1 -2551 4867 4186 3318 78 32 34 chr11 3765576 3766048 -147017505 - HUERS-P3b LTR ERV1 -3875 3543 3073 * 2534 177 30 2 chr11 3766048 3766477 -147017076 + LTR8 LTR ERV1 1 441 -250 1410 48 0 0 chr11 3766477 3766643 -147016910 - HUERS-P3b LTR ERV1 -4776 2642 2477 * 3594 121 0 4 chr11 3766640 3767135 -147016418 - HUERS-P3b LTR ERV1 -5394 2024 1532 3116 161 63 14 chr11 3767127 3767697 -147015856 - HUERS-P3b LTR ERV1 -7580 1339 742 * 895 186 5 69 chr11 3767731 3767919 -147015634 - HUERS-P3b LTR ERV1 -6885 533 358 2687 127 65 59 chr11 3767919 3768468 -147015085 - LTR9 LTR ERV1 -28 766 1 2178 164 36 68 chr11 3768474 3768975 -147014578 + LOR1-int LTR ERV1 348 832 -6705 514 225 14 21 chr11 3769092 3769234 -147014319 + LOR1-int LTR ERV1 851 991 -4132 876 236 69 29 chr11 3769234 3769480 -147014073 + MER34C LTR ERV1 158 413 -172 506 203 25 131 chr11 3769480 3769716 -147013837 + LOR1-int LTR ERV1 1834 2044 -4554 309 187 0 138 chr11 3769706 3769829 -147013724 + LOR1-int LTR ERV1 994 1099 -7021 * 303 190 0 147 chr11 3769730 3769846 -147013707 + LTR57-int LTR ERVL 1034 1132 -4211 * 5613 111 15 1 chr11 3769849 3771060 -147012493 - L1PA11 LINE L1 -150 6024 4801 5844 92 18 23 chr11 3771062 3771918 -147011635 + L1P LINE L1 1917 2767 -3379 3128 94 0 9 chr11 3771919 3772343 -147011210 + L1P LINE L1 3823 4242 -1904 225 0 0 0 chr11 3772380 3772405 -147011148 + (TTTTTG)n Simple_repeat Simple_repeat 2 26 0 216 97 0 0 chr11 3772438 3772469 -147011084 + (A)n Simple_repeat Simple_repeat 1 31 0 8626 95 17 0 chr11 3772477 3774396 -147009157 + L1PA8 LINE L1 4233 6168 -4 526 200 20 10 chr11 3774396 3774489 -147009064 - L1MC/D LINE L1 -654 5588 5492 565 238 8 8 chr11 3774635 3774757 -147008796 + L2 LINE L2 3191 3312 -1 1608 274 89 21 chr11 3774763 3775654 -147007899 - L1MC/D LINE L1 -1052 5094 4144 24 0 0 0 chr11 3776341 3776365 -147007188 + AT_rich Low_complexity Low_complexity 1 24 0 470 348 41 88 chr11 3776694 3777456 -147006097 - L2 LINE L2 -340 2974 2249 257 306 184 10 chr11 3777660 3777948 -147005605 + L2 LINE L2 1732 2069 -1245 228 163 0 0 chr11 3779050 3779093 -147004460 + (TG)n Simple_repeat Simple_repeat 2 44 0 2054 130 0 3 chr11 3780049 3780356 -147003197 - AluSg SINE Alu -3 307 2 183 333 111 26 chr11 3780370 3780487 -147003066 - MER5B DNA MER1_type -45 133 7 1530 92 0 0 chr11 3783649 3783844 -146999709 + AluSc SINE Alu 106 300 -9 318 265 39 10 chr11 3783910 3784012 -146999541 - L1MEc LINE L1 -6135 261 157 248 310 28 14 chr11 3785608 3785750 -146997803 + (CTGGGG)n Simple_repeat Simple_repeat 3 146 0 547 298 104 26 chr11 3785995 3786511 -146997042 + L2 LINE L2 2684 3252 -61 183 213 64 163 chr11 3786626 3786767 -146996786 + L2 LINE L2 3018 3144 -128 228 260 52 0 chr11 3787772 3787849 -146995704 + MIR SINE MIR 118 198 -64 375 348 51 6 chr11 3788118 3788276 -146995277 + MIR SINE MIR 20 184 -78 240 345 73 18 chr11 3790680 3790845 -146992708 - L2 LINE L2 -375 2939 2766 763 275 37 20 chr11 3791055 3791299 -146992254 - MIR SINE MIR -13 249 2 1408 150 18 4 chr11 3792043 3792270 -146991283 + MER46A DNA MER2_type 1 230 -6 1592 235 28 43 chr11 3792526 3792986 -146990567 - LTR16A1 LTR ERVL -2 455 3 293 279 0 106 chr11 3795317 3795478 -146988075 - MIR SINE MIR -41 221 78 273 286 61 68 chr11 3795703 3795850 -146987703 - MER5B DNA MER1_type -30 148 3 202 255 28 166 chr11 3796245 3796390 -146987163 + L2 LINE L2 3123 3247 -25 667 287 135 45 chr11 3796395 3796750 -146986803 + MLT1J1 LTR MaLR 8 394 -52 964 348 91 55 chr11 3797039 3797677 -146985876 + L2 LINE L2 1556 2170 -1143 348 24 0 0 chr11 3797677 3797718 -146985835 + (CA)n Simple_repeat Simple_repeat 1 41 0 964 348 91 55 chr11 3797718 3798541 -146985012 + L2 LINE L2 2170 3062 -251 2175 117 0 3 chr11 3798586 3798894 -146984659 - AluSx SINE Alu -5 307 1 1675 246 96 25 chr11 3798947 3799519 -146984034 + MLT1E2 LTR MaLR 11 623 -3 213 329 13 40 chr11 3799567 3799643 -146983910 - L2 LINE L2 -58 3255 3182 494 213 89 78 chr11 3800013 3800437 -146983116 - LTR4 LTR ERV1 0 596 112 198 286 63 0 chr11 3801010 3801073 -146982480 - L2 LINE L2 -9 3263 3197 223 314 95 0 chr11 3801405 3801510 -146982043 + L2 LINE L2 2770 2884 -430 801 171 35 6 chr11 3803357 3803527 -146980026 - L1MA8 LINE L1 -2 6289 6115 198 0 0 0 chr11 3803529 3803551 -146980002 + (TCCC)n Simple_repeat Simple_repeat 3 24 0 228 182 0 0 chr11 3803557 3803601 -146979952 + CT-rich Low_complexity Low_complexity 2 45 0 1791 174 0 28 chr11 3803611 3803932 -146979621 - AluJo SINE Alu 0 312 1 184 250 16 31 chr11 3804160 3804224 -146979329 - MIR SINE MIR -40 222 160 2123 122 6 10 chr11 3804337 3804649 -146978904 + AluSp SINE Alu 1 311 -2 426 20 0 0 chr11 3804683 3804734 -146978819 + (TG)n Simple_repeat Simple_repeat 2 52 0 26 30 0 0 chr11 3805434 3805467 -146978086 + AT_rich Low_complexity Low_complexity 1 33 0 4923 148 52 9 chr11 3808219 3808618 -146974935 + L1MA9 LINE L1 5370 5751 -561 375 78 0 0 chr11 3808618 3808669 -146974884 + (CA)n Simple_repeat Simple_repeat 1 51 0 4923 148 52 9 chr11 3808669 3809118 -146974435 + L1MA9 LINE L1 5751 6254 -58 1392 165 0 0 chr11 3809120 3809344 -146974209 + L1PA16 LINE L1 5943 6166 0 421 171 0 0 chr11 3809346 3809422 -146974131 + L1MA9 LINE L1 6237 6312 0 894 205 72 0 chr11 3809431 3809626 -146973927 - L1MD1 LINE L1 -112 6524 6316 567 233 7 7 chr11 3809619 3809769 -146973784 - L1MD1 LINE L1 -873 5667 5518 * 3406 252 99 20 chr11 3809798 3810288 -146973265 - L1MD1 LINE L1 -1873 4667 4217 3507 153 53 14 chr11 3810288 3810324 -146973229 - L1MB2 LINE L1 -16 6155 6122 2391 86 7 3 chr11 3810324 3810628 -146972925 - AluSg SINE Alu -5 305 1 3507 153 53 14 chr11 3810628 3811218 -146972335 - L1MB2 LINE L1 -49 6122 5505 3406 252 99 20 chr11 3811218 3812135 -146971418 - L1MD1 LINE L1 -2323 4217 3149 2735 189 48 93 chr11 3812224 3812991 -146970562 - L1MD1 LINE L1 -5807 733 1 186 298 18 0 chr11 3813586 3813643 -146969910 + L2 LINE L2 3002 3059 -254 564 142 16 8 chr11 3814700 3814827 -146968726 + GA-rich Low_complexity Low_complexity 1 128 0 335 353 33 7 chr11 3814986 3815136 -146968417 - MIR SINE MIR 0 262 109 255 287 110 55 chr11 3815454 3815618 -146967935 - MIR3 SINE MIR -16 192 20 1192 174 0 94 chr11 3815745 3816033 -146967520 + L1MA10 LINE L1 6074 6334 0 264 260 144 33 chr11 3816383 3816516 -146967037 + MIR SINE MIR 18 168 -94 2379 75 0 28 chr11 3816516 3816834 -146966719 - AluSc SINE Alu 0 309 1 264 260 144 33 chr11 3816834 3816864 -146966689 + MIR SINE MIR 168 193 -69 489 302 53 11 chr11 3817254 3817443 -146966110 + LTR16C LTR ERVL 291 487 -4 2435 37 37 3 chr11 3817500 3817796 -146965757 + AluY SINE Alu 1 306 -5 293 246 84 53 chr11 3817827 3818007 -146965546 - LTR65 LTR ERV1 -6 663 292 2064 103 0 4 chr11 3818129 3818401 -146965152 + AluSq SINE Alu 1 271 -42 198 0 0 0 chr11 3818421 3818443 -146965110 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 1720 203 28 52 chr11 3818617 3818657 -146964896 - MLT2D LTR ERVL 0 414 375 225 108 0 0 chr11 3818657 3818694 -146964859 + (TAGA)n Simple_repeat Simple_repeat 2 38 0 1720 203 28 52 chr11 3818694 3819077 -146964476 - MLT2D LTR ERVL -39 375 1 569 167 11 0 chr11 3819543 3819633 -146963920 - AluJ/FLAM SINE Alu -220 92 2 289 134 176 17 chr11 3819635 3819754 -146963799 - Charlie5 DNA MER1_type -49 2563 2426 3170 119 33 6 chr11 3819758 3820247 -146963306 - L1MB4 LINE L1 -1 6179 5678 2109 132 3 3 chr11 3820253 3820557 -146962996 - AluSx SINE Alu -8 304 1 217 278 69 0 chr11 3821329 3821401 -146962152 + L3 LINE CR1 1500 1576 -1 27 0 0 0 chr11 3821432 3821459 -146962094 + AT_rich Low_complexity Low_complexity 1 27 0 373 337 85 24 chr11 3821779 3822025 -146961528 + MIR SINE MIR 2 262 0 899 194 0 0 chr11 3822150 3822294 -146961259 - FRAM SINE Alu -27 149 6 2234 99 0 7 chr11 3822331 3822625 -146960928 + AluSc SINE Alu 1 292 -17 197 333 108 17 chr11 3824457 3824577 -146958976 - L2 LINE L2 -197 3075 2945 239 307 86 64 chr11 3826827 3826967 -146956586 - MIR SINE MIR -83 179 37 345 272 53 26 chr11 3827322 3827436 -146956117 - L2 LINE L2 0 3272 3156 205 269 87 91 chr11 3828867 3829109 -146954444 - L2 LINE L2 -1 3271 3031 2038 295 83 39 chr11 3829307 3830466 -146953087 - L2 LINE L2 -33 3280 2071 22 0 0 0 chr11 3831158 3831180 -146952373 + AT_rich Low_complexity Low_complexity 1 22 0 33 0 0 0 chr11 3831221 3831254 -146952299 + AT_rich Low_complexity Low_complexity 1 33 0 192 200 44 0 chr11 3831254 3831356 -146952197 + (TA)n Simple_repeat Simple_repeat 1 141 0 593 285 98 38 chr11 3831365 3831600 -146951953 + MIR SINE MIR 2 250 -12 286 339 36 55 chr11 3831791 3832028 -146951525 + MIR3 SINE MIR 38 208 0 1084 136 5 0 chr11 3834322 3834513 -146949040 + L1MA6 LINE L1 6107 6298 -2 2450 65 0 3 chr11 3834701 3835008 -146948545 + AluY SINE Alu 1 306 -5 303 299 23 0 chr11 3835750 3835837 -146947716 + L1MC4 LINE L1 6615 6703 -1339 225 0 0 0 chr11 3835837 3835862 -146947691 + (CA)n Simple_repeat Simple_repeat 2 26 0 252 347 89 45 chr11 3836846 3837226 -146946327 + L2 LINE L2 1845 2241 -1073 207 240 0 20 chr11 3838149 3838199 -146945354 + MIR SINE MIR 42 90 -172 485 342 27 46 chr11 3838232 3838495 -146945058 - MIR SINE MIR -3 259 2 251 224 0 0 chr11 3838502 3838551 -146945002 + MIR SINE MIR 96 144 -118 193 282 0 64 chr11 3838773 3838851 -146944702 - L3b LINE CR1 -143 1440 1368 841 154 0 34 chr11 3839239 3839414 -146944139 - L1MB8 LINE L1 -3 6175 6007 636 335 33 5 chr11 3840186 3840401 -146943152 + L2 LINE L2 2451 2671 -643 1792 191 82 14 chr11 3840533 3840947 -146942606 + MLT1D LTR MaLR 1 442 -63 244 286 26 13 chr11 3841007 3841084 -146942469 - MIR SINE MIR -150 112 35 322 292 131 13 chr11 3841973 3842209 -146941344 + L1ME LINE L1 5561 5824 -297 964 200 117 38 chr11 3842441 3842787 -146940766 + MSTC LTR MaLR 1 428 0 271 411 6 13 chr11 3843097 3843255 -146940298 - L2 LINE L2 0 3272 3116 268 270 135 0 chr11 3843309 3843383 -146940170 + MER5A DNA MER1_type 26 109 -80 34 24 0 0 chr11 3843781 3843822 -146939731 + AT_rich Low_complexity Low_complexity 1 41 0 204 347 0 11 chr11 3843882 3843977 -146939576 - L2 LINE L2 -319 2953 2860 202 209 30 15 chr11 3844188 3844255 -146939298 + (TAA)n Simple_repeat Simple_repeat 2 69 0 308 291 163 20 chr11 3844269 3844465 -146939088 - MIR SINE MIR -2 260 37 252 366 27 9 chr11 3846566 3846678 -146936875 + MIR SINE MIR 22 135 -73 1724 100 58 4 chr11 3846969 3847209 -146936344 + AluSc SINE Alu 1 253 -56 180 0 0 0 chr11 3847234 3847254 -146936299 + (TGG)n Simple_repeat Simple_repeat 2 21 0 1839 134 3 58 chr11 3847556 3847869 -146935684 + AluJb SINE Alu 17 312 0 2277 174 76 8 chr11 3847884 3848719 -146934834 - L1MB1 LINE L1 -13 6155 5226 191 380 28 28 chr11 3849142 3849284 -146934269 + L2 LINE L2 2031 2172 -1142 215 241 0 0 chr11 3950532 3950586 -146832967 + (TTTA)n Simple_repeat Simple_repeat 2 55 0 412 317 91 4 chr11 3950993 3951236 -146832317 - L1ME LINE L1 -437 5725 5462 28 29 0 0 chr11 3951339 3951374 -146832179 + AT_rich Low_complexity Low_complexity 1 35 0 380 83 33 0 chr11 3952611 3952671 -146830882 + (TTCTC)n Simple_repeat Simple_repeat 4 65 0 270 0 0 0 chr11 3952832 3952862 -146830691 + (T)n Simple_repeat Simple_repeat 1 30 0 932 313 14 11 chr11 3953235 3953869 -146829684 - L1MC/D LINE L1 -769 5590 4955 393 296 14 10 chr11 3954723 3954916 -146828637 + HERVK LTR ERVK 3094 3748 -3495 230 274 0 0 chr11 3955140 3955202 -146828351 + (CAGG)n Simple_repeat Simple_repeat 2 63 0 250 250 95 17 chr11 3955207 3955323 -146828230 + FRAM SINE Alu 42 166 0 2193 267 31 20 chr11 3955342 3956402 -146827151 + L1PA16 LINE L1 4861 5930 -236 486 210 115 25 chr11 3958129 3958316 -146825237 + AluJo SINE Alu 118 318 0 25 31 0 0 chr11 3958332 3958364 -146825189 + AT_rich Low_complexity Low_complexity 1 32 0 206 186 23 0 chr11 3958439 3958482 -146825071 + A-rich Low_complexity Low_complexity 6 49 0 657 0 0 0 chr11 3958707 3958780 -146824773 + (GGGA)n Simple_repeat Simple_repeat 1 73 0 307 187 22 22 chr11 3959388 3959479 -146824074 + (TCTG)n Simple_repeat Simple_repeat 1 91 0 246 155 35 35 chr11 3959827 3959885 -146823668 + tRNA-Lys-AAA tRNA tRNA 6 63 -13 1063 289 67 56 chr11 3963605 3964672 -146818881 + HERVK LTR ERVK 2427 3397 -2548 578 253 84 103 chr11 3965211 3966134 -146817419 + HERVK LTR ERVK 4261 4998 -947 451 196 87 64 chr11 3968178 3968351 -146815202 + FRAM SINE Alu 1 176 0 25 31 0 0 chr11 3968521 3968553 -146815000 + AT_rich Low_complexity Low_complexity 1 32 0 4901 273 22 8 chr11 3972001 3973623 -146809930 + L1 LINE L1 2624 4268 -1878 222 37 0 0 chr11 3974022 3974049 -146809504 + (CTTG)n Simple_repeat Simple_repeat 1 27 0 400 177 131 54 chr11 3974669 3974799 -146808754 + FRAM SINE Alu 37 176 0 241 220 0 17 chr11 3975559 3975618 -146807935 + tRNA-Lys-AAA tRNA tRNA 6 63 -13 33 25 0 0 chr11 3975704 3975744 -146807809 + AT_rich Low_complexity Low_complexity 1 40 0 239 220 0 17 chr11 3976043 3976102 -146807451 + tRNA-Lys-AAA tRNA tRNA 6 63 -13 281 106 21 21 chr11 3978635 3978682 -146804871 + AluSp SINE Alu 136 182 -121 275 284 34 0 chr11 3979309 3979397 -146804156 - L1MA5 LINE L1 -369 5931 5841 414 0 0 0 chr11 3979841 3979887 -146803666 + (GGA)n Simple_repeat Simple_repeat 3 48 0 312 27 0 0 chr11 3981034 3981071 -146802482 + (TAGA)n Simple_repeat Simple_repeat 2 38 0 245 281 34 11 chr11 3981089 3981178 -146802375 + L1MA5 LINE L1 5841 5931 -369 281 106 21 21 chr11 3981813 3981860 -146801693 - AluSp SINE Alu -121 182 136 327 227 30 68 chr11 3982931 3983063 -146800490 + HERVK LTR ERVK 2515 2641 -3275 23 0 0 0 chr11 3983079 3983102 -146800451 + AT_rich Low_complexity Low_complexity 1 23 0 409 254 38 48 chr11 3983124 3983375 -146800178 + HERVK LTR ERVK 2976 3835 -3408 22 35 0 0 chr11 3983574 3983603 -146799950 + AT_rich Low_complexity Low_complexity 1 29 0 1363 320 14 15 chr11 3983875 3985065 -146798488 - L1MA5A LINE L1 -366 5931 4743 218 254 0 0 chr11 3985219 3985274 -146798279 + T-rich Low_complexity Low_complexity 4 58 0 6130 267 5 5 chr11 3985939 3988467 -146795086 - L1MA9 LINE L1 -381 5931 3402 342 153 0 0 chr11 3991561 3991620 -146791933 + (TA)n Simple_repeat Simple_repeat 1 59 0 240 221 0 26 chr11 3992776 3992853 -146790700 + (CAGAGA)n Simple_repeat Simple_repeat 6 80 0 183 80 0 0 chr11 3993082 3993107 -146790446 + (T)n Simple_repeat Simple_repeat 1 25 0 204 40 0 0 chr11 3993789 3993814 -146789739 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 282 192 29 29 chr11 3993927 3994031 -146789522 - L1P LINE L1 -2347 3799 3696 524 293 45 28 chr11 3995059 3995530 -146788023 + L1 LINE L1 3108 3586 -2560 225 209 15 0 chr11 3995770 3995837 -146787716 - MLT2A1 LTR ERVL 0 444 377 1419 300 34 60 chr11 3996387 3997612 -146785941 + L1 LINE L1 3856 5048 -1098 201 39 0 0 chr11 3998053 3998079 -146785474 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 284 204 116 14 chr11 3999054 3999192 -146784361 + AluS SINE Alu 3 95 -208 429 176 65 131 chr11 3999283 3999436 -146784117 + FLAM_C SINE Alu 1 143 0 1146 88 0 0 chr11 4004388 4004548 -146779005 + (TTCTC)n Simple_repeat Simple_repeat 4 163 0 295 228 109 0 chr11 4004587 4004679 -146778874 - FLAM_C SINE Alu -27 106 5 28 29 0 0 chr11 4004899 4004934 -146778619 + AT_rich Low_complexity Low_complexity 1 35 0 190 333 0 0 chr11 4005017 4005077 -146778476 - MIR SINE MIR -197 65 6 679 320 16 16 chr11 4005100 4005540 -146778013 - L1 LINE L1 -825 5321 4882 36 23 0 0 chr11 4006519 4006562 -146776991 + AT_rich Low_complexity Low_complexity 1 43 0 286 260 73 57 chr11 4008599 4008776 -146774777 - AluJo SINE Alu 0 302 123 323 259 95 20 chr11 4009247 4009426 -146774127 + AluSq/x SINE Alu 2 113 -189 22 80 0 0 chr11 4011216 4011266 -146772287 + AT_rich Low_complexity Low_complexity 1 50 0 243 0 0 0 chr11 4011781 4011808 -146771745 + (GTTTG)n Simple_repeat Simple_repeat 3 29 0 195 42 0 0 chr11 4011819 4011843 -146771710 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 333 211 105 11 chr11 4011893 4011988 -146771565 - AluSq/x SINE Alu -197 105 2 21 0 0 0 chr11 4012331 4012352 -146771201 + AT_rich Low_complexity Low_complexity 1 21 0 27 49 0 0 chr11 4012505 4012546 -146771007 + AT_rich Low_complexity Low_complexity 1 41 0 501 319 51 24 chr11 4013607 4014090 -146769463 - L1M4 LINE L1 -959 5187 4719 336 24 0 0 chr11 4014090 4014131 -146769422 + (TTG)n Simple_repeat Simple_repeat 2 42 0 501 319 51 24 chr11 4014131 4014153 -146769400 - L1M4 LINE L1 -1427 4719 4699 189 0 0 0 chr11 4014153 4014174 -146769379 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 501 319 51 24 chr11 4014174 4014287 -146769266 - L1M4 LINE L1 -1447 4699 4552 23 33 0 0 chr11 4016152 4016182 -146767371 + AT_rich Low_complexity Low_complexity 1 30 0 1939 254 25 28 chr11 4016849 4017709 -146765844 - L1MA4 LINE L1 -375 5925 5066 2819 262 10 6 chr11 4017719 4018608 -146764945 + L1 LINE L1 3987 4879 -1267 823 308 42 35 chr11 4019360 4020140 -146763413 - L1M4 LINE L1 -960 5186 4395 405 0 0 0 chr11 4020140 4020185 -146763368 + (TTTA)n Simple_repeat Simple_repeat 4 48 0 823 308 42 35 chr11 4020185 4020379 -146763174 - L1M4 LINE L1 -1751 4395 4204 333 0 0 0 chr11 4020479 4020516 -146763037 + (T)n Simple_repeat Simple_repeat 1 37 0 189 107 0 0 chr11 4020620 4020648 -146762905 + (TTTTC)n Simple_repeat Simple_repeat 3 30 0 188 317 0 0 chr11 4020741 4020801 -146762752 - MIR SINE MIR -197 65 6 643 221 14 27 chr11 4020854 4021059 -146762494 - L1MA7 LINE L1 -324 5976 5769 26 30 0 0 chr11 4021059 4021092 -146762461 + AT_rich Low_complexity Low_complexity 1 33 0 240 203 0 17 chr11 4021178 4021237 -146762316 - tRNA-Lys-AAA tRNA tRNA -13 63 6 203 59 0 29 chr11 4022272 4022306 -146761247 + (CAAAA)n Simple_repeat Simple_repeat 4 36 0 21 0 0 0 chr11 4023113 4023134 -146760419 + AT_rich Low_complexity Low_complexity 1 21 0 572 80 0 11 chr11 4024453 4024541 -146759012 + (TTTC)n Simple_repeat Simple_repeat 2 88 0 254 295 95 0 chr11 4025262 4025357 -146758196 + FLAM_A SINE Alu 2 105 -28 788 88 7 0 chr11 4025437 4025573 -146757980 + (CA)n Simple_repeat Simple_repeat 2 138 0 27 49 0 0 chr11 4026768 4026809 -146756744 + AT_rich Low_complexity Low_complexity 1 41 0 1125 226 4 0 chr11 4027395 4027661 -146755892 - L1MA7 LINE L1 -523 5657 5391 27 0 0 0 chr11 4028235 4028262 -146755291 + AT_rich Low_complexity Low_complexity 1 27 0 252 131 0 66 chr11 4028786 4028847 -146754706 + (CAAAAA)n Simple_repeat Simple_repeat 2 58 0 416 184 125 53 chr11 4028998 4029150 -146754403 + FRAM SINE Alu 1 162 -14 296 231 0 0 chr11 4029233 4029298 -146754255 - tRNA-Ala-GCG tRNA tRNA -10 65 1 202 206 15 44 chr11 4029335 4029403 -146754150 + MIR3 SINE MIR 1 66 -142 243 224 0 0 chr11 4029647 4029723 -146753830 + CT-rich Low_complexity Low_complexity 2 77 0 207 0 0 0 chr11 4031565 4031588 -146751965 + (CAAA)n Simple_repeat Simple_repeat 4 26 0 552 249 10 24 chr11 4032589 4032798 -146750755 + L1 LINE L1 2155 2360 -3786 771 174 0 0 chr11 4032915 4033059 -146750494 + G-rich Low_complexity Low_complexity 4 147 0 599 175 8 0 chr11 4033044 4033164 -146750389 + GA-rich Low_complexity Low_complexity 1 121 0 * 405 201 85 0 chr11 4033547 4033650 -146749903 + AluSg SINE Alu 1 103 -207 23 0 0 0 chr11 4035245 4035268 -146748285 + AT_rich Low_complexity Low_complexity 1 23 0 183 80 0 0 chr11 4035694 4035719 -146747834 + (CTTG)n Simple_repeat Simple_repeat 2 26 0 239 120 0 40 chr11 4036534 4036584 -146746969 + (GAAA)n Simple_repeat Simple_repeat 4 51 0 668 174 90 30 chr11 4038508 4038675 -146744878 - FRAM SINE Alu 0 176 1 543 183 136 41 chr11 4040569 4040738 -146742815 + AluJo SINE Alu 120 304 -8 225 0 0 0 chr11 4043310 4043335 -146740218 + (A)n Simple_repeat Simple_repeat 1 25 0 260 200 142 58 chr11 4043356 4043476 -146740077 + FRAM SINE Alu 37 166 0 270 116 0 0 chr11 4043651 4043694 -146739859 + (GAAAA)n Simple_repeat Simple_repeat 2 44 0 525 215 92 25 chr11 4046655 4046882 -146736671 + FRAM SINE Alu 2 239 0 600 53 0 0 chr11 4046882 4046958 -146736595 + (GGA)n Simple_repeat Simple_repeat 3 78 0 861 120 0 0 chr11 4048338 4048471 -146735082 + (GGAA)n Simple_repeat Simple_repeat 1 133 0 22 0 0 0 chr11 4048485 4048507 -146735046 + AT_rich Low_complexity Low_complexity 1 22 0 257 292 81 19 chr11 4050157 4050318 -146733235 - Tigger1 DNA MER2_type -288 2130 1960 205 217 50 50 chr11 4051684 4051744 -146731809 + MIR SINE MIR 6 65 -197 26 0 0 0 chr11 4051827 4051853 -146731700 + AT_rich Low_complexity Low_complexity 1 26 0 458 215 133 19 chr11 4054325 4054483 -146729070 + FRAM SINE Alu 1 176 0 546 133 0 0 chr11 4054485 4054575 -146728978 + (GGAA)n Simple_repeat Simple_repeat 3 92 0 488 202 115 66 chr11 4056815 4056998 -146726555 + AluJo SINE Alu 120 311 -1 215 214 0 0 chr11 4058201 4058243 -146725310 + GA-rich Low_complexity Low_complexity 3 44 0 925 286 53 29 chr11 4060028 4060541 -146723012 + HERVK14C LTR ERVK 2647 3171 -2774 366 268 9 23 chr11 4060731 4060906 -146722647 + HERVK14C LTR ERVK 3565 3833 -3410 21 0 0 0 chr11 4061134 4061155 -146722398 + AT_rich Low_complexity Low_complexity 1 21 0 302 296 15 15 chr11 4061269 4061401 -146722152 + HERVK14C LTR ERVK 4655 4786 -3330 267 311 0 0 chr11 4061800 4061874 -146721679 + L1 LINE L1 4072 4145 -2001 21 0 0 0 chr11 4062674 4062695 -146720858 + AT_rich Low_complexity Low_complexity 1 21 0 267 31 0 0 chr11 4064174 4064206 -146719347 + (T)n Simple_repeat Simple_repeat 1 32 0 183 327 55 45 chr11 4065880 4065990 -146717563 - L2 LINE L2 -6 3266 3156 260 231 29 29 chr11 4066484 4066588 -146716965 + L1P LINE L1 3696 3799 -2347 622 175 150 12 chr11 4068401 4068561 -146714992 - AluJo SINE Alu -10 302 121 225 154 0 0 chr11 4069079 4069118 -146714435 + (TA)n Simple_repeat Simple_repeat 2 40 0 256 208 0 26 chr11 4070648 4070725 -146712828 + (CAGAGA)n Simple_repeat Simple_repeat 6 80 0 560 129 10 0 chr11 4071387 4071488 -146712065 + (TTCC)n Simple_repeat Simple_repeat 3 104 0 207 0 0 0 chr11 4072465 4072488 -146711065 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 182 103 0 26 chr11 4072498 4072537 -146711016 + (CAAT)n Simple_repeat Simple_repeat 2 39 0 481 204 114 60 chr11 4074176 4074343 -146709210 - FRAM SINE Alu -1 175 1 1303 260 64 23 chr11 4075961 4076396 -146707157 - HERVR LTR ERV1 -2180 5212 4760 521 273 139 85 chr11 4076588 4077505 -146706048 - HERVR LTR ERV1 -3326 5652 3252 260 316 0 0 chr11 4077508 4077587 -146705966 - HERVR LTR ERV1 -3796 3596 3518 266 231 22 55 chr11 4077751 4077842 -146705711 - HERVR LTR ERV1 -5870 1522 1435 430 311 0 0 chr11 4078894 4079071 -146704482 - HERVR LTR ERV1 -6787 605 429 279 123 25 19 chr11 4080741 4080814 -146702739 - MLT2A1 LTR ERVL 0 444 380 380 0 0 98 chr11 4081331 4081392 -146702161 + (T)n Simple_repeat Simple_repeat 1 55 0 574 242 81 6 chr11 4083263 4083424 -146700129 + FRAM SINE Alu 1 173 -3 505 153 127 60 chr11 4084694 4084867 -146698686 + AluJo SINE Alu 126 285 -27 184 42 0 0 chr11 4084700 4084902 -146698651 + (CAAAA)n Simple_repeat Simple_repeat 2 203 0 7413 280 11 13 chr11 4085821 4089293 -146694260 + L1MA4 LINE L1 1432 4905 -1241 2139 281 14 10 chr11 4089551 4090586 -146692967 + L1MA4 LINE L1 4892 5930 -370 21 36 0 0 chr11 4092891 4092919 -146690634 + AT_rich Low_complexity Low_complexity 1 28 0 372 203 14 142 chr11 4092919 4093067 -146690486 - FLAM_C SINE Alu -3 130 2 2068 115 3 10 chr11 4093561 4093849 -146689704 - AluSx SINE Alu -26 286 1 33 25 0 0 chr11 4093962 4094002 -146689551 + AT_rich Low_complexity Low_complexity 1 40 0 194 309 0 29 chr11 4094028 4094096 -146689457 - MIR3 SINE MIR -142 66 1 639 39 0 0 chr11 4094460 4094538 -146689015 + (TTTC)n Simple_repeat Simple_repeat 2 79 0 8935 274 12 11 chr11 4095951 4100521 -146683032 + L1MA9 LINE L1 1991 6647 -381 231 308 0 0 chr11 4102837 4102902 -146680651 + C-rich Low_complexity Low_complexity 4 68 0 469 272 19 13 chr11 4103019 4103220 -146680333 - L1MA2 LINE L1 -221 5930 5713 401 250 1 15 chr11 4103105 4103251 -146680302 - L1ME2 LINE L1 -337 5825 5681 * 405 310 36 70 chr11 4103471 4103887 -146679666 - L1M2 LINE L1 -4630 2219 1818 409 179 105 11 chr11 4106240 4106335 -146677218 + AluSq/x SINE Alu 2 105 -208 276 30 0 0 chr11 4106382 4106415 -146677138 + (CAAA)n Simple_repeat Simple_repeat 1 33 0 348 24 0 0 chr11 4106431 4106472 -146677081 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 297 0 0 0 chr11 4106733 4106766 -146676787 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1178 34 7 0 chr11 4106905 4107052 -146676501 + (TTTTC)n Simple_repeat Simple_repeat 2 149 0 23 33 0 0 chr11 4109386 4109416 -146674137 + AT_rich Low_complexity Low_complexity 1 30 0 500 139 146 49 chr11 4109955 4110099 -146673454 - FRAM SINE Alu -19 157 1 24 32 0 0 chr11 4110812 4110843 -146672710 + AT_rich Low_complexity Low_complexity 1 31 0 569 144 117 64 chr11 4111905 4112093 -146671460 - AluJo SINE Alu 0 312 115 427 127 60 217 chr11 4114690 4114876 -146668677 - FLAM_C SINE Alu 0 162 3 449 181 85 0 chr11 4116087 4116181 -146667372 - AluSg SINE Alu -207 103 2 26 64 0 0 chr11 4116697 4116744 -146666809 + AT_rich Low_complexity Low_complexity 1 47 0 29 28 0 0 chr11 4118248 4118284 -146665269 + AT_rich Low_complexity Low_complexity 1 36 0 266 194 65 93 chr11 4120629 4120768 -146662785 - AluSp SINE Alu -168 135 1 197 160 0 40 chr11 4124796 4124846 -146658707 + (TATG)n Simple_repeat Simple_repeat 1 48 0 21 36 0 0 chr11 4125304 4125332 -146658221 + AT_rich Low_complexity Low_complexity 1 28 0 1386 184 115 46 chr11 4227222 4227952 -146555601 - L1ME2 LINE L1 -552 5610 4837 24 53 0 0 chr11 4228002 4228040 -146555513 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr11 4228102 4228123 -146555430 + AT_rich Low_complexity Low_complexity 1 21 0 579 252 26 26 chr11 4228468 4228623 -146554930 - MIR SINE MIR -102 160 6 1081 153 0 0 chr11 4231311 4231487 -146552066 - L1MA2 LINE L1 -40 6264 6089 294 311 97 104 chr11 4231730 4232019 -146551534 + L2 LINE L2 2980 3266 -6 1695 231 37 85 chr11 4232243 4232840 -146550713 - L1M1 LINE L1 -6990 575 8 332 346 29 10 chr11 4232948 4233205 -146550348 - L1ME LINE L1 -315 5806 5545 2334 100 3 3 chr11 4233219 4233530 -146550023 - AluY SINE Alu 0 311 1 43 56 0 0 chr11 4233599 4233670 -146549883 + AT_rich Low_complexity Low_complexity 1 71 0 21 82 0 0 chr11 4233853 4233902 -146549651 + AT_rich Low_complexity Low_complexity 1 49 0 333 294 56 21 chr11 4233910 4234053 -146549500 - L1ME LINE L1 -740 5444 5297 1166 246 14 14 chr11 4234064 4234349 -146549204 + AluJo SINE Alu 11 295 -17 452 139 13 0 chr11 4234351 4234430 -146549123 - MADE1 DNA Mariner 0 80 1 14295 149 36 7 chr11 4234673 4236974 -146546579 + L1MA1 LINE L1 609 3007 -4558 2137 116 0 0 chr11 4236974 4237258 -146546295 + AluSp SINE Alu 3 286 -27 14295 149 36 7 chr11 4237258 4237634 -146545919 + L1MA1 LINE L1 3007 3371 -4194 1778 156 184 11 chr11 4237634 4237999 -146545554 - MSTA LTR MaLR 0 428 1 6414 163 5 12 chr11 4237999 4239161 -146544392 - MSTA-int LTR MaLR 0 1580 427 6931 161 133 6 chr11 4239221 4242029 -146541524 + L1MA1 LINE L1 4534 7721 0 24 0 0 0 chr11 4242773 4242797 -146540756 + AT_rich Low_complexity Low_complexity 1 24 0 756 114 93 0 chr11 4242797 4242937 -146540616 - L1MA5A LINE L1 0 6297 6145 1606 113 4 4 chr11 4245167 4245432 -146538121 - L1MA4A LINE L1 -1 6302 6038 208 338 0 0 chr11 4245465 4245542 -146538011 + L2 LINE L2 2175 2251 -1063 21 0 0 0 chr11 4245792 4245813 -146537740 + AT_rich Low_complexity Low_complexity 1 21 0 31 26 0 0 chr11 4246023 4246061 -146537492 + AT_rich Low_complexity Low_complexity 1 38 0 31 26 0 0 chr11 4246213 4246251 -146537302 + AT_rich Low_complexity Low_complexity 1 38 0 902 263 121 52 chr11 4246759 4247818 -146535735 + L1MEc LINE L1 1737 2859 -3356 3905 167 27 36 chr11 4247887 4248715 -146534838 + L1MA9 LINE L1 5491 6310 -2 936 268 75 18 chr11 4248762 4249414 -146534139 + L1MEc LINE L1 3282 4034 -2181 37053 74 4 2 chr11 4249422 4254581 -146528972 + L1P LINE L1 11 5178 -968 21 0 0 0 chr11 4256531 4256552 -146527001 + AT_rich Low_complexity Low_complexity 1 21 0 2145 80 60 30 chr11 4256721 4257020 -146526533 + AluSx SINE Alu 1 308 -4 266 187 66 11 chr11 4257201 4257292 -146526261 + (TA)n Simple_repeat Simple_repeat 1 96 0 24 32 0 0 chr11 4257667 4257698 -146525855 + AT_rich Low_complexity Low_complexity 1 31 0 268 365 63 16 chr11 4257846 4258035 -146525518 - MIR3 SINE MIR -1 207 10 357 24 0 0 chr11 4258428 4258470 -146525083 + (TG)n Simple_repeat Simple_repeat 2 43 0 215 158 26 0 chr11 4258471 4258509 -146525044 + GA-rich Low_complexity Low_complexity 2 40 0 21 71 0 0 chr11 4258735 4258777 -146524776 + AT_rich Low_complexity Low_complexity 1 42 0 305 288 69 32 chr11 4258842 4259033 -146524520 - MIR3 SINE MIR -50 212 14 432 291 152 19 chr11 4259971 4260129 -146523424 - MER5A DNA MER1_type -1 188 10 330 286 70 60 chr11 4262051 4262250 -146521303 + MER58C DNA MER1_type 1 201 -14 300 377 41 8 chr11 4265201 4265323 -146518230 - L2 LINE L2 0 3272 3147 23 33 0 0 chr11 4266022 4266052 -146517501 + AT_rich Low_complexity Low_complexity 1 30 0 533 220 66 70 chr11 4266894 4267153 -146516400 + LTR41 LTR ERVL 25 282 -491 581 196 35 85 chr11 4267590 4267789 -146515764 + LTR41 LTR ERVL 578 766 -7 319 363 31 44 chr11 4269465 4269919 -146513634 + ERVL LTR ERVL 1728 2175 -3479 485 363 73 23 chr11 4269976 4270635 -146512918 + ERVL LTR ERVL 3496 4187 -1467 270 305 172 0 chr11 4272792 4272943 -146510610 - MIR SINE MIR 0 262 86 212 228 0 35 chr11 4273023 4273196 -146510357 + GA-rich Low_complexity Low_complexity 1 166 0 397 344 84 26 chr11 4273279 4273506 -146510047 - MIR SINE MIR -1 261 22 1916 167 6 6 chr11 4273795 4274106 -146509447 + AluJb SINE Alu 1 311 -1 196 349 63 68 chr11 4274165 4274802 -146508751 + L2 LINE L2 1993 2626 -688 21 0 0 0 chr11 4274829 4274850 -146508703 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr11 4275988 4276025 -146507528 + AT_rich Low_complexity Low_complexity 1 37 0 1580 213 10 19 chr11 4276061 4276371 -146507182 - AluJb SINE Alu -5 307 1 315 327 31 38 chr11 4276390 4276549 -146507004 - HAL1b LINE L1 -460 888 731 34 0 0 0 chr11 4276572 4276606 -146506947 + AT_rich Low_complexity Low_complexity 1 34 0 2124 78 0 25 chr11 4276697 4276978 -146506575 + AluY SINE Alu 35 308 -3 2232 202 47 2 chr11 4277174 4277703 -146505850 + L1 LINE L1 2500 3052 -3094 223 245 20 0 chr11 4277787 4277836 -146505717 - MER5A DNA MER1_type -83 106 57 4155 90 17 80 chr11 4278127 4278836 -146504717 + MER4A LTR ERV1 1 664 0 629 251 67 17 chr11 4279241 4279480 -146504073 - L1ME3 LINE L1 -329 5833 5583 525 297 0 47 chr11 4279488 4279744 -146503809 - L1ME3 LINE L1 -627 5537 5294 585 286 65 21 chr11 4279759 4280144 -146503409 - L1ME3 LINE L1 -895 5251 4850 775 130 7 43 chr11 4280147 4280305 -146503248 + FLAM_C SINE Alu 1 133 0 561 138 0 0 chr11 4280511 4280591 -146502962 + AluSq SINE Alu 143 222 -91 248 162 0 59 chr11 4280640 4280708 -146502845 + (CATATA)n Simple_repeat Simple_repeat 1 64 0 863 187 35 111 chr11 4280721 4281319 -146502234 + MER4C LTR ERV1 5 455 -10 300 106 0 45 chr11 4281388 4281454 -146502099 + (CATATA)n Simple_repeat Simple_repeat 5 67 0 252 333 0 0 chr11 4281582 4281663 -146501890 + L2 LINE L2 1199 1279 -2035 2082 140 6 17 chr11 4282125 4282474 -146501079 + L1PA15 LINE L1 5817 6161 -4 242 267 39 17 chr11 4285400 4285531 -146498022 + MIR SINE MIR 16 147 -62 1760 202 0 3 chr11 4285568 4285870 -146497683 + AluJo SINE Alu 1 301 -11 3516 57 0 2 chr11 4285906 4286344 -146497209 - L1PA6 LINE L1 -13 6141 5705 1543 64 0 0 chr11 4286344 4286546 -146497007 + L1PA6 LINE L1 5502 5703 -451 33 25 0 0 chr11 4286582 4286622 -146496931 + AT_rich Low_complexity Low_complexity 1 40 0 4188 54 0 0 chr11 4287010 4287567 -146495986 + L1P LINE L1 2211 2767 -3379 187 255 78 20 chr11 4288030 4288081 -146495472 - L2 LINE L2 -16 3297 3244 733 274 18 18 chr11 4288126 4288349 -146495204 + MER58A DNA MER1_type 1 223 -1 21 0 0 0 chr11 4288374 4288395 -146495158 + AT_rich Low_complexity Low_complexity 1 21 0 1889 162 7 3 chr11 4288687 4288856 -146494697 - AluSx SINE Alu -12 300 128 192 40 0 0 chr11 4288856 4288881 -146494672 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1889 162 7 3 chr11 4288881 4289008 -146494545 - AluSx SINE Alu -184 128 3 31 88 0 0 chr11 4290997 4291077 -146492476 + AT_rich Low_complexity Low_complexity 1 80 0 246 313 25 0 chr11 4291330 4291410 -146492143 - L2 LINE L2 -8 3305 3224 2242 144 47 43 chr11 4291643 4291836 -146491717 + MSTB LTR MaLR 1 192 -234 1907 119 7 7 chr11 4291836 4292156 -146491397 + AluSc SINE Alu 3 322 0 2242 144 47 43 chr11 4292156 4292383 -146491170 + MSTB LTR MaLR 192 424 -2 8219 179 13 55 chr11 4292385 4294101 -146489452 + MSTB-int LTR MaLR 1 1645 -6 2195 153 52 41 chr11 4294106 4294525 -146489028 + MSTB LTR MaLR 1 424 -2 25 0 0 0 chr11 4295954 4295979 -146487574 + AT_rich Low_complexity Low_complexity 1 25 0 279 282 70 49 chr11 4296479 4296621 -146486932 + L2 LINE L2 3169 3313 0 200 356 77 66 chr11 4297133 4297498 -146486055 - L2 LINE L2 -15 3257 2889 414 57 0 0 chr11 4297805 4297858 -146485695 + (TC)n Simple_repeat Simple_repeat 2 54 0 516 283 40 29 chr11 4301782 4301955 -146481598 - MIR SINE MIR -42 220 46 260 304 74 30 chr11 4302742 4302877 -146480676 + L2 LINE L2 3167 3307 -6 2131 93 0 30 chr11 4303568 4303870 -146479683 - AluSg SINE Alu -8 302 10 224 383 14 46 chr11 4303999 4304216 -146479337 + L2 LINE L2 2733 2942 -372 296 359 0 10 chr11 4307209 4307312 -146476241 + L2 LINE L2 1121 1222 -2092 26 0 0 0 chr11 4307314 4307340 -146476213 + AT_rich Low_complexity Low_complexity 1 26 0 233 164 0 18 chr11 4307728 4307783 -146475770 + CT-rich Low_complexity Low_complexity 1 54 0 221 167 0 0 chr11 4307787 4307829 -146475724 + (TAG)n Simple_repeat Simple_repeat 2 43 0 378 304 65 42 chr11 4308421 4308589 -146474964 + L1M4b LINE L1 1238 1409 -5450 5187 133 5 10 chr11 4308597 4309541 -146474012 + L1PA11 LINE L1 4501 5435 -739 2239 120 7 0 chr11 4309541 4309842 -146473711 - AluSg SINE Alu -7 303 1 5187 133 5 10 chr11 4309842 4310397 -146473156 + L1PA11 LINE L1 5435 5992 -182 9511 56 0 4 chr11 4310397 4312388 -146471165 + L1PA5 LINE L1 4166 6154 0 339 289 57 54 chr11 4312388 4312738 -146470815 + L1M4b LINE L1 2518 2868 -4270 1045 334 93 35 chr11 4312763 4313527 -146470026 - L2 LINE L2 -806 2508 1701 558 269 27 32 chr11 4314169 4314355 -146469198 + MIR SINE MIR 78 262 0 22 0 0 0 chr11 4315711 4315733 -146467820 + AT_rich Low_complexity Low_complexity 1 22 0 562 236 55 18 chr11 4315862 4316027 -146467526 - MIR SINE MIR -14 248 78 218 203 31 31 chr11 4316082 4316146 -146467407 + (CAGAGA)n Simple_repeat Simple_repeat 4 67 0 737 249 53 0 chr11 4316259 4316448 -146467105 + MER3 DNA MER1_type 9 207 -2 275 85 21 0 chr11 4316695 4316742 -146466811 + (TG)n Simple_repeat Simple_repeat 1 48 0 1662 230 38 38 chr11 4317486 4317990 -146465563 - MLT1D LTR MaLR -1 504 1 772 239 29 34 chr11 4319714 4319923 -146463630 + MER3 DNA MER1_type 1 208 -1 1185 221 46 57 chr11 4320038 4320405 -146463148 - L1ME1 LINE L1 -19 6147 5785 22 0 0 0 chr11 4320518 4320540 -146463013 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr11 4320574 4320595 -146462958 + AT_rich Low_complexity Low_complexity 1 21 0 218 301 88 44 chr11 4320717 4320830 -146462723 + L2 LINE L2 3195 3312 -1 2041 128 0 0 chr11 4321107 4321389 -146462164 + AluSg SINE Alu 1 282 -28 447 245 128 41 chr11 4321678 4321874 -146461679 + MIR SINE MIR 49 261 -1 225 341 101 8 chr11 4323823 4323952 -146459601 + MIR SINE MIR 26 166 -96 21 0 0 0 chr11 4325188 4325209 -146458344 + AT_rich Low_complexity Low_complexity 1 21 0 339 260 91 67 chr11 4326859 4327067 -146456486 + MER46C DNA MER2_type 1 213 -125 1501 167 70 56 chr11 4327478 4327820 -146455733 + MER7A DNA MER2_type 2 346 0 21 0 0 0 chr11 4328418 4328439 -146455114 + AT_rich Low_complexity Low_complexity 1 21 0 438 361 17 22 chr11 4328483 4328713 -146454840 + MIR SINE MIR 12 240 -22 189 380 67 36 chr11 4329970 4330165 -146453388 - L2 LINE L2 -33 3239 3039 1535 181 78 6 chr11 4331395 4331715 -146451838 + MER2 DNA MER2_type 2 344 0 423 0 0 0 chr11 4333209 4333256 -146450297 + (TAA)n Simple_repeat Simple_repeat 2 48 0 1983 198 70 5 chr11 4333368 4333768 -146449785 - MSTB LTR MaLR 0 426 1 31 68 0 0 chr11 4335539 4335598 -146447955 + AT_rich Low_complexity Low_complexity 1 59 0 318 311 228 14 chr11 4335941 4336160 -146447393 + L2 LINE L2 2872 3137 -176 678 158 7 82 chr11 4336365 4336511 -146447042 + FLAM_C SINE Alu 6 140 -3 332 257 178 0 chr11 4336748 4336849 -146446704 - MIR SINE MIR -40 222 104 21 0 0 0 chr11 4336946 4336967 -146446586 + AT_rich Low_complexity Low_complexity 1 21 0 1373 175 51 25 chr11 4338195 4338469 -146445084 + AluJo SINE Alu 1 281 -31 691 280 86 76 chr11 4339343 4339653 -146443900 - L1MEc LINE L1 -3586 2629 2323 291 28 0 0 chr11 4339653 4339689 -146443864 + (CA)n Simple_repeat Simple_repeat 2 37 0 2178 118 3 0 chr11 4339694 4339991 -146443562 - AluSc SINE Alu -11 298 1 691 280 86 76 chr11 4339991 4340974 -146442579 - L1MEc LINE L1 -3895 2320 1366 315 0 0 0 chr11 4341381 4341416 -146442137 + (TG)n Simple_repeat Simple_repeat 2 36 0 527 361 51 16 chr11 4341428 4341683 -146441870 - LTR16A LTR ERVL -84 366 103 327 338 20 35 chr11 4342127 4342325 -146441228 - ERVL LTR ERVL -609 5155 4961 37 0 0 0 chr11 4342325 4342362 -146441191 + AT_rich Low_complexity Low_complexity 1 37 0 520 405 57 17 chr11 4342768 4343629 -146439924 - ERVL LTR ERVL -1195 4459 3565 2357 73 0 7 chr11 4343689 4343989 -146439564 - AluY SINE Alu -13 298 1 369 304 22 44 chr11 4344437 4344618 -146438935 - ERVL LTR ERVL -2429 2567 2391 1258 142 28 5 chr11 4344874 4345086 -146438467 - L1PA16 LINE L1 -234 5932 5716 236 121 61 15 chr11 4345085 4345151 -146438402 - L1M LINE L1 -2455 5330 5262 * 33 56 0 0 chr11 4345439 4345493 -146438060 + AT_rich Low_complexity Low_complexity 1 54 0 25 0 0 0 chr11 4345638 4345663 -146437890 + AT_rich Low_complexity Low_complexity 1 25 0 369 273 117 0 chr11 4346719 4346847 -146436706 - MIR SINE MIR -80 182 40 272 319 122 30 chr11 4346917 4347212 -146436341 + L2 LINE L2 1979 2300 -1014 189 415 12 0 chr11 4347345 4347427 -146436126 - L2 LINE L2 -3 3269 3187 36 40 0 0 chr11 4348164 4348214 -146435339 + AT_rich Low_complexity Low_complexity 1 50 0 245 211 141 0 chr11 4349020 4349091 -146434462 + MIR SINE MIR 124 204 -58 2211 103 3 19 chr11 4349338 4349648 -146433905 + AluSq SINE Alu 1 305 -8 229 303 0 13 chr11 4349674 4349750 -146433803 - L1ME LINE L1 -466 5655 5581 192 282 12 82 chr11 4351057 4351142 -146432411 - L2 LINE L2 -213 3059 2981 1626 272 22 20 chr11 4352512 4353016 -146430537 - MLT1D LTR MaLR 0 505 1 273 215 78 112 chr11 4353125 4353330 -146430223 + L2 LINE L2 3105 3302 -11 228 241 138 0 chr11 4353904 4353962 -146429591 + L2 LINE L2 3145 3210 -62 790 297 114 25 chr11 4354067 4354471 -146429082 + L2 LINE L2 2862 3301 -12 287 313 73 13 chr11 4354684 4354834 -146428719 - MIR SINE MIR -34 228 70 2466 183 122 7 chr11 4355160 4355728 -146427825 + LTR24C LTR ERV1 1 633 -2 226 298 37 106 chr11 4356275 4356463 -146427090 + L2 LINE L2 2898 3072 -200 781 291 65 58 chr11 4356632 4357061 -146426492 - MLT1G1 LTR MaLR -163 432 1 1022 86 50 0 chr11 4358568 4358707 -146424846 + AluY SINE Alu 1 146 -165 401 228 134 13 chr11 4358725 4358874 -146424679 + LTR33 LTR ERVL 205 371 -150 268 283 11 0 chr11 4358991 4359083 -146424470 + T-rich Low_complexity Low_complexity 4 96 0 352 298 50 16 chr11 4359584 4359705 -146423848 + L2 LINE L2 3148 3272 0 236 376 30 0 chr11 4359744 4359877 -146423676 - MIR SINE MIR -74 188 52 443 314 15 7 chr11 4360511 4360648 -146422905 - MIR SINE MIR -102 160 23 309 89 0 0 chr11 4363783 4363828 -146419725 + (TAAAA)n Simple_repeat Simple_repeat 5 49 0 23 33 0 0 chr11 4364219 4364249 -146419304 + AT_rich Low_complexity Low_complexity 1 30 0 1674 145 25 7 chr11 4364266 4364549 -146419004 - L1PB4 LINE L1 -7 6149 5862 190 358 119 50 chr11 4366582 4366800 -146416753 + MIR SINE MIR 20 252 -10 234 0 0 0 chr11 4368089 4368115 -146415438 + (A)n Simple_repeat Simple_repeat 1 26 0 348 265 122 0 chr11 4369374 4369472 -146414081 + MER81 DNA DNA 5 114 0 613 259 29 0 chr11 4369486 4369625 -146413928 + MLT1G1 LTR MaLR 2 144 -451 285 189 0 0 chr11 4369644 4369697 -146413856 - L1MA6 LINE L1 -140 6160 6108 487 184 0 0 chr11 4369702 4369800 -146413753 + L1MA6 LINE L1 6203 6300 0 913 269 170 14 chr11 4369826 4370261 -146413292 - MLT1D LTR MaLR 0 505 3 943 284 105 20 chr11 4370298 4370603 -146412950 + MLT1G1 LTR MaLR 223 501 -94 2092 122 30 43 chr11 4370603 4370971 -146412582 - THE1B LTR MaLR -1 363 1 11325 106 6 1 chr11 4370971 4372543 -146411010 - THE1B-int LTR MaLR 0 1580 1 2114 126 24 48 chr11 4372543 4372916 -146410637 - THE1B LTR MaLR 0 364 1 943 284 105 20 chr11 4372916 4372950 -146410603 + MLT1G1 LTR MaLR 500 593 -2 25 31 0 0 chr11 4372953 4372985 -146410568 + AT_rich Low_complexity Low_complexity 1 32 0 1078 234 97 9 chr11 4373015 4373365 -146410188 - L1ME1 LINE L1 -5 6161 5781 310 271 0 0 chr11 4373367 4373474 -146410079 + (TA)n Simple_repeat Simple_repeat 1 107 0 721 211 108 18 chr11 4373495 4373718 -146409835 - L1ME1 LINE L1 -422 5744 5502 1322 302 65 20 chr11 4373766 4374454 -146409099 + L1ME3A LINE L1 5292 6010 -160 1104 283 164 50 chr11 4374633 4375953 -146407600 + L1ME3A LINE L1 3475 4944 -1202 1837 270 65 42 chr11 4375991 4376828 -146406725 + L1ME3A LINE L1 5306 6161 -9 184 400 0 0 chr11 4376950 4377030 -146406523 + MIR SINE MIR 48 127 -135 301 320 33 33 chr11 4377111 4377261 -146406292 - MIR SINE MIR -95 167 18 4214 173 9 9 chr11 4377355 4377370 -146406183 + L1PB4 LINE L1 5394 5408 -748 1800 179 124 16 chr11 4377370 4377756 -146405797 - MSTA LTR MaLR 0 428 1 4214 173 9 9 chr11 4377756 4378499 -146405054 + L1PB4 LINE L1 5407 6152 -4 207 100 0 0 chr11 4378506 4378536 -146405017 + (TC)n Simple_repeat Simple_repeat 2 31 0 1334 135 0 34 chr11 4378536 4378773 -146404780 + MSTB1 LTR MaLR 204 432 0 6717 132 17 2 chr11 4378822 4380669 -146402884 + L1PA10 LINE L1 4304 6164 -4 979 265 177 38 chr11 4380726 4381179 -146402374 - MLT1E LTR MaLR -77 516 1 231 328 138 45 chr11 4383015 4383412 -146400141 + L2 LINE L2 1551 1984 -1330 2314 84 7 0 chr11 4383437 4383735 -146399818 - AluSc SINE Alu -9 300 1 490 347 44 28 chr11 4385555 4385803 -146397750 - MIR SINE MIR -6 256 5 4100 77 12 2 chr11 4386386 4386973 -146396580 - L1P LINE L1 -2286 3860 3268 218 200 0 0 chr11 4388968 4389013 -146394540 + A-rich Low_complexity Low_complexity 2 46 0 292 375 86 36 chr11 4389333 4389637 -146393916 - L3 LINE CR1 -5 1572 1254 264 364 40 7 chr11 4389629 4389780 -146393773 + L2 LINE L2 3149 3304 -9 * 31 0 0 0 chr11 4390576 4390607 -146392946 + AT_rich Low_complexity Low_complexity 1 31 0 277 274 48 25 chr11 4391458 4391661 -146391892 - L1M LINE L1 -766 5380 5188 426 267 185 20 chr11 4392002 4392148 -146391405 - MER5A DNA MER1_type -2 187 18 2308 89 0 22 chr11 4392322 4392637 -146390916 + AluSc SINE Alu 2 309 0 194 91 30 0 chr11 4392811 4392844 -146390709 + (TTTA)n Simple_repeat Simple_repeat 4 37 0 308 337 56 59 chr11 4392888 4393194 -146390359 - L1M4 LINE L1 -1973 4173 3869 968 201 23 27 chr11 4394022 4394241 -146389312 - MER20 DNA MER1_type -1 218 1 287 281 61 35 chr11 4394805 4394919 -146388634 + MIR SINE MIR 33 149 -113 199 319 85 32 chr11 4395465 4395559 -146387994 - L2 LINE L2 0 3272 3174 411 198 0 23 chr11 4396139 4396225 -146387328 + L1PA16 LINE L1 5978 6061 -105 21 0 0 0 chr11 4398866 4398887 -146384666 + AT_rich Low_complexity Low_complexity 1 21 0 246 371 29 0 chr11 4398894 4398999 -146384554 - MIR SINE MIR -108 154 47 243 176 139 46 chr11 4399381 4399489 -146384064 + LTR38B LTR ERV1 1 118 -492 1803 111 19 8 chr11 4399602 4399863 -146383690 - AluSx SINE Alu -9 303 40 300 290 41 89 chr11 4400003 4400324 -146383229 + LTR38 LTR ERV1 291 556 0 317 89 40 40 chr11 4400445 4400546 -146383007 + (TCTA)n Simple_repeat Simple_repeat 2 102 0 2560 46 0 0 chr11 4400879 4401184 -146382369 + AluY SINE Alu 1 305 -6 6806 165 29 26 chr11 4402525 4403769 -146379784 - Ricksha_b DNA DNA -7 1247 1 210 71 95 0 chr11 4403945 4403987 -146379566 + (TTTG)n Simple_repeat Simple_repeat 3 48 0 3860 83 2 0 chr11 4404992 4405524 -146378029 + L1P LINE L1 4329 4861 -1285 273 192 0 0 chr11 4405543 4405595 -146377958 + LTR49-int LTR ERV1 4994 5045 -1286 3540 126 16 3 chr11 4405595 4406416 -146377137 - L1PA11 LINE L1 -579 5595 4769 4093 118 2 5 chr11 4406416 4407011 -146376542 + L1PA11 LINE L1 5565 6163 -11 976 285 30 65 chr11 4407018 4407512 -146376041 + LTR49-int LTR ERV1 3764 4240 -696 1358 218 38 50 chr11 4407525 4407943 -146375610 + LTR37A LTR ERV1 4 416 -10 1393 214 13 105 chr11 4408011 4408535 -146375018 - MER31A LTR ERV1 -9 476 1 1355 210 68 87 chr11 4408658 4409129 -146374424 - MER31A-int LTR ERV1 -100 4836 4375 3314 205 53 13 chr11 4409205 4409999 -146373554 - MER31A-int LTR ERV1 -727 4209 3384 1333 226 57 17 chr11 4410000 4410402 -146373151 - MER31A-int LTR ERV1 -1763 3173 2756 3123 215 56 77 chr11 4410500 4412469 -146371084 - MER31A-int LTR ERV1 -2372 2564 654 314 316 57 60 chr11 4412472 4412807 -146370746 - L1M2b LINE L1 -5414 1795 1462 661 321 5 5 chr11 4412861 4413057 -146370496 - MER31A-int LTR ERV1 -4524 412 217 405 170 85 32 chr11 4413064 4413158 -146370395 - MER31A-int LTR ERV1 -4670 266 168 610 209 102 53 chr11 4413346 4413566 -146369987 - MER31A LTR ERV1 -2 483 253 1922 180 43 38 chr11 4413566 4413988 -146369565 - MSTB1 LTR MaLR 0 432 9 687 237 73 78 chr11 4413994 4414239 -146369314 - MER31B LTR ERV1 -222 244 1 22 0 0 0 chr11 4414353 4414375 -146369178 + AT_rich Low_complexity Low_complexity 1 22 0 2916 66 5 0 chr11 4416665 4417045 -146366508 + L1PA10 LINE L1 5776 6157 -11 888 339 37 15 chr11 4419094 4419495 -146364058 - LTR16A LTR ERVL 0 450 41 1852 164 24 34 chr11 4419816 4420195 -146363358 + THE1C LTR MaLR 1 375 0 861 324 39 6 chr11 4420719 4421055 -146362498 + HERV16 LTR ERVL 736 1082 -3914 325 314 80 5 chr11 4421056 4421244 -146362309 + HERV16 LTR ERVL 1602 1803 -3193 409 319 86 36 chr11 4421289 4421901 -146361652 + HERV16 LTR ERVL 1906 2677 -2319 23 54 0 0 chr11 4422420 4422457 -146361096 + AT_rich Low_complexity Low_complexity 1 37 0 435 287 8 59 chr11 4422910 4423147 -146360406 + HAL1 LINE L1 2277 2501 -6 4793 149 107 70 chr11 4423182 4424366 -146359187 - Tigger3b DNA MER2_type -2 1229 2 241 316 13 13 chr11 4424407 4424486 -146359067 + MIR SINE MIR 63 141 -121 24 0 0 0 chr11 4424830 4424854 -146358699 + AT_rich Low_complexity Low_complexity 1 24 0 608 219 50 60 chr11 4424940 4425141 -146358412 - MIR SINE MIR -1 261 63 256 330 29 0 chr11 4426916 4427019 -146356534 - MIR SINE MIR -10 252 147 216 0 0 0 chr11 4427410 4427434 -146356119 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 204 193 60 133 chr11 4428424 4428507 -146355046 + L2 LINE L2 3237 3313 0 262 247 123 25 chr11 4429014 4429095 -146354458 - MIR SINE MIR -92 116 28 265 254 41 75 chr11 4429645 4429784 -146353769 + MIR SINE MIR 9 151 -57 23 0 0 0 chr11 4430251 4430274 -146353279 + AT_rich Low_complexity Low_complexity 1 23 0 339 0 0 41 chr11 4430780 4430829 -146352724 - L1PA3 LINE L1 0 6155 6109 250 379 110 9 chr11 4431866 4432193 -146351360 + LTR16A LTR ERVL 1 360 -90 24 0 0 0 chr11 4432458 4432482 -146351071 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr11 4432534 4432562 -146350991 + AT_rich Low_complexity Low_complexity 1 28 0 28 71 0 0 chr11 4433138 4433194 -146350359 + AT_rich Low_complexity Low_complexity 1 56 0 183 255 122 61 chr11 4433544 4433642 -146349911 - L3 LINE CR1 -1390 187 84 560 279 141 21 chr11 4433871 4434346 -146349207 + MLT1G1 LTR MaLR 22 578 -17 241 333 70 0 chr11 4434872 4434986 -146348567 - L2 LINE L2 0 3313 3192 279 53 70 0 chr11 4435129 4435186 -146348367 + T-rich Low_complexity Low_complexity 2 62 0 18854 29 0 0 chr11 4435189 4438212 -146345341 - L1PA2 LINE L1 -2 6153 3131 460 125 11 11 chr11 4439187 4439275 -146344278 + (TTCC)n Simple_repeat Simple_repeat 1 88 0 197 128 0 26 chr11 4439379 4439418 -146344135 + (GAAA)n Simple_repeat Simple_repeat 4 41 0 23 0 0 0 chr11 4440701 4440724 -146342829 + AT_rich Low_complexity Low_complexity 1 23 0 489 255 163 0 chr11 4440812 4440965 -146342588 + MER5A DNA MER1_type 12 189 0 276 224 250 0 chr11 4441328 4441444 -146342109 + MIR SINE MIR 117 261 -1 271 180 0 0 chr11 4441727 4441788 -146341765 - L1MA8 LINE L1 -4 6287 6227 22 0 0 0 chr11 4444928 4444950 -146338603 + AT_rich Low_complexity Low_complexity 1 22 0 423 83 0 0 chr11 4447289 4447349 -146336204 + (TG)n Simple_repeat Simple_repeat 1 60 0 1284 226 51 0 chr11 4448913 4449188 -146334365 + AluJo SINE Alu 10 298 -14 381 122 0 37 chr11 4449188 4449270 -146334283 + (GGA)n Simple_repeat Simple_repeat 1 79 0 25 31 0 0 chr11 4449463 4449495 -146334058 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr11 4449600 4449623 -146333930 + AT_rich Low_complexity Low_complexity 1 23 0 1381 170 49 61 chr11 4449708 4450037 -146333516 - MER44D DNA MER2_type 0 609 15 21 36 0 0 chr11 4450150 4450178 -146333375 + AT_rich Low_complexity Low_complexity 1 28 0 566 290 82 34 chr11 4450259 4450871 -146332682 + L1M4 LINE L1 4408 5047 -1099 * 3354 181 40 14 chr11 4450865 4451560 -146331993 + L1MA7 LINE L1 5491 6203 -88 409 141 76 0 chr11 4451663 4451755 -146331798 + L1MA7 LINE L1 6186 6284 -7 280 295 147 8 chr11 4451780 4451909 -146331644 - MIR SINE MIR -31 231 85 546 260 39 0 chr11 4452085 4452239 -146331314 + L1MCb LINE L1 570 729 -5316 1508 164 75 4 chr11 4452258 4452538 -146331015 - MER7A DNA MER2_type -1 345 48 1712 99 0 0 chr11 4452551 4452784 -146330769 - L1PA10 LINE L1 -168 6000 5768 1309 163 9 70 chr11 4452884 4453228 -146330325 + Ricksha DNA DNA 2922 3244 -7 2606 49 0 0 chr11 4454569 4454877 -146328676 - AluY SINE Alu -3 308 1 317 89 40 40 chr11 4455210 4455311 -146328242 + (TAGA)n Simple_repeat Simple_repeat 2 102 0 300 292 40 86 chr11 4455432 4455753 -146327800 - LTR38 LTR ERV1 0 564 291 1826 111 19 8 chr11 4455891 4456152 -146327401 + AluSx SINE Alu 40 303 -9 239 176 139 46 chr11 4456265 4456373 -146327180 - LTR38B LTR ERV1 -492 118 1 240 371 29 0 chr11 4456755 4456860 -146326693 + MIR SINE MIR 47 154 -108 21 0 0 0 chr11 4456867 4456888 -146326665 + AT_rich Low_complexity Low_complexity 1 21 0 362 205 0 12 chr11 4459532 4459615 -146323938 - L1PA16 LINE L1 -105 6061 5980 2166 110 0 7 chr11 4459770 4460062 -146323491 - AluSx SINE Alu -22 290 1 232 385 111 26 chr11 4460086 4460554 -146322999 + L2 LINE L2 2804 3311 -2 299 259 132 63 chr11 4461021 4461210 -146322343 - MIR SINE MIR -28 234 33 21 36 0 0 chr11 4461624 4461652 -146321901 + AT_rich Low_complexity Low_complexity 1 28 0 1020 194 17 0 chr11 4462265 4462445 -146321108 - AluJb SINE Alu -1 311 129 2433 86 0 6 chr11 4462447 4462761 -146320792 - AluSx SINE Alu 0 312 1 648 70 0 0 chr11 4462831 4462917 -146320636 + (TC)n Simple_repeat Simple_repeat 2 87 0 294 29 0 0 chr11 4462918 4462953 -146320600 - AluSp/q SINE Alu -21 282 248 1094 121 6 6 chr11 4462953 4463110 -146320443 - AluSx SINE Alu -155 157 1 204 182 0 0 chr11 4463156 4463200 -146320353 + (CATATA)n Simple_repeat Simple_repeat 2 45 0 2562 45 3 0 chr11 4463336 4463645 -146319908 - AluY SINE Alu -1 310 1 724 146 48 24 chr11 4464314 4464479 -146319074 + ORSL DNA AcHobo 91 259 -16 23 0 0 0 chr11 4466205 4466228 -146317325 + AT_rich Low_complexity Low_complexity 1 23 0 400 279 79 57 chr11 4468752 4469017 -146314536 + L1M4 LINE L1 3198 3468 -2678 1331 297 66 30 chr11 4469175 4470232 -146313321 + L1M4 LINE L1 3588 4682 -1464 559 203 63 13 chr11 4471824 4471982 -146311571 + L1MA9 LINE L1 5939 6104 -208 341 161 0 0 chr11 4472110 4472166 -146311387 + L1MA9 LINE L1 6104 6159 -153 228 111 0 0 chr11 4472222 4472258 -146311295 + (TATATG)n Simple_repeat Simple_repeat 5 40 0 186 209 0 0 chr11 4472584 4472627 -146310926 + T-rich Low_complexity Low_complexity 1 43 0 485 71 14 0 chr11 4472630 4472700 -146310853 + (TTCC)n Simple_repeat Simple_repeat 2 72 0 224 130 22 0 chr11 4472703 4472749 -146310804 + CT-rich Low_complexity Low_complexity 2 48 0 456 77 0 0 chr11 4474117 4474182 -146309371 + (CA)n Simple_repeat Simple_repeat 1 65 0 30 27 0 0 chr11 4474366 4474403 -146309150 + AT_rich Low_complexity Low_complexity 1 37 0 333 279 90 23 chr11 4476324 4476574 -146306979 - LTR36 LTR ERV1 0 611 345 2113 131 0 0 chr11 4476658 4476963 -146306590 - AluSx SINE Alu -7 305 1 242 188 14 14 chr11 4477037 4477106 -146306447 - LTR36 LTR ERV1 -472 139 71 728 283 61 5 chr11 4477862 4478060 -146305493 - MER63A DNA MER1_type -1 209 1 1017 301 71 31 chr11 4478206 4478628 -146304925 + LTR16A LTR ERVL 1 439 -11 2354 201 126 24 chr11 4478707 4479365 -146304188 - MER50 LTR ERV1 0 734 10 310 204 121 25 chr11 4479542 4479699 -146303854 - L1M4 LINE L1 -897 5137 4966 316 172 60 48 chr11 4479702 4479829 -146303724 - LTR41 LTR ERVL -2 793 650 522 258 26 13 chr11 4480354 4480509 -146303044 - LTR41 LTR ERVL -616 157 1 2009 140 66 3 chr11 4480744 4481108 -146302445 + LTR34 LTR ERV1 313 699 0 336 223 39 31 chr11 4481177 4481307 -146302246 - L1M4 LINE L1 -1302 4732 4602 2171 137 5 39 chr11 4481355 4481743 -146301810 + THE1C LTR MaLR 1 375 0 2274 124 3 17 chr11 4481768 4482114 -146301439 + THE1C-int LTR MaLR 1240 1580 0 1745 162 90 9 chr11 4482116 4482461 -146301092 + THE1C LTR MaLR 3 375 0 330 303 60 0 chr11 4482555 4482740 -146300813 - L1M4 LINE L1 -1594 4440 4245 4023 137 32 33 chr11 4483007 4483735 -146299818 - LTR8A LTR ERV1 0 727 1 186 71 0 0 chr11 4483953 4483981 -146299572 + (CA)n Simple_repeat Simple_repeat 1 28 0 509 332 26 5 chr11 4484673 4484866 -146298687 - MIR SINE MIR -46 216 20 2419 84 0 3 chr11 4484871 4485182 -146298371 - AluSg SINE Alu 0 310 1 796 246 47 9 chr11 4485303 4485514 -146298039 - MER20 DNA MER1_type 0 219 1 218 336 199 0 chr11 4487960 4488106 -146295447 - MIR SINE MIR -21 241 67 235 370 71 28 chr11 4489086 4489297 -146294256 + L2 LINE L2 2460 2679 -635 225 345 48 12 chr11 4489600 4489684 -146293869 + L2 LINE L2 2998 3084 -188 763 165 0 0 chr11 4489851 4489966 -146293587 + FLAM_A SINE Alu 9 123 -19 1828 144 0 0 chr11 4489970 4490227 -146293326 + AluSc SINE Alu 22 278 -31 345 160 0 0 chr11 4490177 4490227 -146293326 + AluSc SINE Alu 229 305 0 211 37 0 0 chr11 4490227 4490254 -146293299 + (CAAA)n Simple_repeat Simple_repeat 2 68 0 262 356 20 45 chr11 4492293 4492495 -146291058 + L2 LINE L2 1767 1963 -1351 2904 201 86 24 chr11 4492503 4493293 -146290260 - L1MC3 LINE L1 0 7785 6947 2209 235 95 74 chr11 4493304 4494212 -146289341 - L1MEc LINE L1 -2646 3736 2789 1536 181 3 45 chr11 4494212 4494536 -146289017 + AluJo SINE Alu 3 314 0 2209 235 95 74 chr11 4494536 4494893 -146288660 - L1MEc LINE L1 -3593 2789 2441 4021 206 40 6 chr11 4495129 4495192 -146288361 - L1MA9 LINE L1 -75 6237 6178 230 0 33 0 chr11 4495192 4495222 -146288331 + (TG)n Simple_repeat Simple_repeat 2 32 0 4021 206 40 6 chr11 4495222 4496027 -146287526 - L1MA9 LINE L1 -134 6178 5339 2772 296 22 10 chr11 4496020 4497914 -146285639 - L1M4 LINE L1 -4401 1634 12 * 323 253 90 24 chr11 4497937 4498232 -146285321 - L1MEc LINE L1 -3953 2471 2110 5052 164 35 9 chr11 4498235 4499178 -146284375 - Tigger1 DNA MER2_type -6 2412 1446 8614 244 24 27 chr11 4499178 4504839 -146278714 + L1PA12 LINE L1 1 5113 -2471 2008 148 0 0 chr11 4504839 4505129 -146278424 + AluSx SINE Alu 1 290 -22 566 299 87 71 chr11 4505289 4505542 -146278011 - L1M4 LINE L1 -1505 4641 4394 3160 143 12 0 chr11 4505542 4506053 -146277500 - L1PA15 LINE L1 -4 6161 5645 3060 178 18 5 chr11 4506053 4506626 -146276927 + LTR22 LTR ERVK 1 580 0 566 299 87 71 chr11 4506626 4507075 -146276478 - L1M4 LINE L1 -1752 4394 3911 1429 113 102 4 chr11 4507075 4507350 -146276203 + L1MA3 LINE L1 6003 6304 -1 566 299 87 71 chr11 4507350 4507736 -146275817 - L1M4 LINE L1 -2235 3911 3533 235 296 45 34 chr11 4508569 4508657 -146274896 + MER5B DNA MER1_type 8 96 -82 1029 275 53 6 chr11 4508669 4509011 -146274542 - L1ME LINE L1 -391 5771 5414 1643 180 42 19 chr11 4509122 4509483 -146274070 - L1MA7 LINE L1 -129 6162 5794 341 316 137 0 chr11 4509572 4509784 -146273769 - L1ME LINE L1 -1058 5088 4848 256 281 0 47 chr11 4509785 4509849 -146273704 - MER5B DNA MER1_type -110 68 8 324 260 91 25 chr11 4509982 4510267 -146273286 - L1ME LINE L1 -2872 3274 2971 261 185 46 62 chr11 4510639 4510704 -146272849 - L2 LINE L2 0 3313 3250 252 309 52 16 chr11 4511363 4511489 -146272064 + MIR SINE MIR 45 176 -62 411 198 0 23 chr11 4514123 4514209 -146269344 - L1PA16 LINE L1 -105 6061 5978 199 319 85 32 chr11 4514789 4514883 -146268670 + L2 LINE L2 3174 3272 0 276 278 52 35 chr11 4515429 4515544 -146268009 - MIR SINE MIR -113 149 33 967 206 23 27 chr11 4516108 4516327 -146267226 + MER20 DNA MER1_type 1 218 -1 310 337 56 59 chr11 4517155 4517461 -146266092 + L1MB1 LINE L1 3869 4173 -1973 22 0 0 0 chr11 4517503 4517525 -146266028 + AT_rich Low_complexity Low_complexity 1 22 0 2223 95 0 23 chr11 4517701 4518007 -146265546 - AluSc SINE Alu -9 300 2 426 267 185 20 chr11 4518175 4518321 -146265232 + MER5A DNA MER1_type 18 187 -2 250 284 58 23 chr11 4518662 4518859 -146264694 + L1MB1 LINE L1 5188 5384 -747 31 0 0 0 chr11 4519716 4519747 -146263806 + AT_rich Low_complexity Low_complexity 1 31 0 264 364 40 7 chr11 4520543 4520694 -146262859 - L2 LINE L2 -9 3304 3149 * 284 359 92 43 chr11 4520686 4520990 -146262563 + L3 LINE CR1 1254 1572 -5 218 200 0 0 chr11 4521310 4521355 -146262198 + T-rich Low_complexity Low_complexity 2 46 0 1415 206 120 5 chr11 4523446 4523814 -146259739 + L1MB1 LINE L1 5768 6177 -12 27 0 0 0 chr11 4523823 4523850 -146259703 + AT_rich Low_complexity Low_complexity 1 27 0 416 202 0 12 chr11 4523854 4523938 -146259615 - MLT1C LTR MaLR -384 83 1 411 335 45 15 chr11 4523948 4524148 -146259405 + HAL1 LINE L1 1599 1804 -703 32 95 0 0 chr11 4524989 4525084 -146258469 + AT_rich Low_complexity Low_complexity 1 95 0 565 343 44 0 chr11 4525091 4525295 -146258258 - MIR SINE MIR -17 245 33 21 36 0 0 chr11 4526143 4526171 -146257382 + AT_rich Low_complexity Low_complexity 1 28 0 267 189 0 0 chr11 4529174 4529227 -146254326 + CT-rich Low_complexity Low_complexity 4 56 0 423 273 66 0 chr11 4530493 4530614 -146252939 - FLAM_A SINE Alu -4 129 1 22 0 0 0 chr11 4530742 4530764 -146252789 + AT_rich Low_complexity Low_complexity 1 22 0 387 0 0 0 chr11 4530842 4530885 -146252668 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 21 95 0 0 chr11 4531063 4531126 -146252427 + AT_rich Low_complexity Low_complexity 1 63 0 414 335 52 47 chr11 4531247 4531731 -146251822 - L1MEd LINE L1 -856 1634 1050 9838 155 42 16 chr11 4531797 4532736 -146250817 + Tigger1 DNA MER2_type 304 1217 -1201 1990 95 23 36 chr11 4532736 4533041 -146250512 - AluSc SINE Alu -8 301 1 9838 155 42 16 chr11 4533041 4534008 -146249545 + Tigger1 DNA MER2_type 1217 2323 -95 2017 170 100 0 chr11 4534008 4534397 -146249156 - MSTC LTR MaLR 0 428 1 9838 155 42 16 chr11 4534397 4534496 -146249057 + Tigger1 DNA MER2_type 2323 2418 0 462 332 14 36 chr11 4534947 4535170 -146248383 - MIR SINE MIR -34 228 11 21 0 0 0 chr11 4535486 4535507 -146248046 + AT_rich Low_complexity Low_complexity 1 21 0 180 200 0 0 chr11 4536098 4536143 -146247410 + CT-rich Low_complexity Low_complexity 2 46 0 24 0 0 0 chr11 4536168 4536192 -146247361 + AT_rich Low_complexity Low_complexity 1 24 0 266 164 0 16 chr11 4538702 4538763 -146244790 + CT-rich Low_complexity Low_complexity 3 62 0 22 80 0 0 chr11 4539691 4539741 -146243812 + AT_rich Low_complexity Low_complexity 1 50 0 22 70 0 0 chr11 4540198 4540241 -146243312 + AT_rich Low_complexity Low_complexity 1 43 0 2539 182 11 17 chr11 4540242 4540763 -146242790 - L1PA16 LINE L1 -4 6162 5645 656 97 0 19 chr11 4541160 4541263 -146242290 + L1MA2 LINE L1 6197 6297 -7 22 0 0 0 chr11 4541283 4541305 -146242248 + AT_rich Low_complexity Low_complexity 1 22 0 356 322 24 10 chr11 4541333 4541538 -146242015 + L1MD1 LINE L1 4657 4864 -1282 1708 252 56 12 chr11 4542034 4542550 -146241003 - L1MB8 LINE L1 -42 6136 5598 * 2718 204 105 24 chr11 4542545 4543286 -146240267 + L1MD1 LINE L1 5404 6204 -38 23 0 0 0 chr11 4543303 4543326 -146240227 + AT_rich Low_complexity Low_complexity 1 23 0 504 284 36 13 chr11 4543345 4543570 -146239983 - L1MEc LINE L1 -3457 2758 2529 776 302 101 21 chr11 4543591 4544104 -146239449 - L1MEc LINE L1 -3918 2478 1925 261 276 0 0 chr11 4544170 4544228 -146239325 + Tigger3(Golem) DNA MER2_type 1 58 -2971 2908 147 8 25 chr11 4544233 4544742 -146238811 + Tigger3(Golem) DNA MER2_type 2529 3028 -1 389 264 31 109 chr11 4544825 4545018 -146238535 + MER58A DNA MER1_type 27 204 -20 610 125 62 0 chr11 4545246 4545342 -146238211 - AluSq/x SINE Alu -206 107 6 2245 75 0 0 chr11 4545356 4545668 -146237885 - AluY SINE Alu 0 312 1 459 289 30 6 chr11 4545694 4545860 -146237693 - L1M4 LINE L1 -1795 5770 5601 4461 54 0 14 chr11 4545867 4546445 -146237108 - L1PA8 LINE L1 -5 6167 5598 1245 72 0 0 chr11 4546445 4546612 -146236941 + L1PA8 LINE L1 5416 5582 -590 714 268 44 12 chr11 4546617 4546867 -146236686 - L1M4 LINE L1 -1988 5577 5320 26 50 0 0 chr11 4546922 4546962 -146236591 + AT_rich Low_complexity Low_complexity 1 40 0 1155 226 7 14 chr11 4548973 4549260 -146234293 - L1MC3 LINE L1 0 7785 7501 1383 131 5 5 chr11 4549613 4549819 -146233734 + AluSg/x SINE Alu 95 300 -12 1890 154 0 3 chr11 4552110 4552402 -146231151 - AluSx SINE Alu -19 293 3 1047 224 94 31 chr11 4553407 4553787 -146229766 - L1MCc LINE L1 -4157 3409 2785 364 20 0 0 chr11 4553924 4553973 -146229580 + L1PA15 LINE L1 6110 6158 -7 252 265 105 50 chr11 4554129 4554310 -146229243 + L2 LINE L2 1813 2003 -1311 325 298 0 8 chr11 4554313 4554434 -146229119 + (TA)n Simple_repeat Simple_repeat 1 120 0 257 275 0 0 chr11 4554441 4554521 -146229032 + L1MC4 LINE L1 6624 6703 -1339 259 51 26 0 chr11 4554768 4554807 -146228746 + L1PA13 LINE L1 6111 6150 -13 324 209 26 26 chr11 4554813 4554928 -146228625 + (TA)n Simple_repeat Simple_repeat 2 116 0 447 356 108 53 chr11 4554932 4555643 -146227910 + L2 LINE L2 2031 2780 -534 21 57 0 0 chr11 4557045 4557080 -146226473 + AT_rich Low_complexity Low_complexity 1 35 0 674 262 69 57 chr11 4557641 4557912 -146225641 + MLT1D LTR MaLR 88 354 -151 36 23 0 0 chr11 4558254 4558297 -146225256 + AT_rich Low_complexity Low_complexity 1 43 0 186 428 11 0 chr11 4559394 4559493 -146224060 - MIR SINE MIR -61 147 50 339 25 0 0 chr11 4559845 4559885 -146223668 + (CA)n Simple_repeat Simple_repeat 2 41 0 315 258 0 43 chr11 4563292 4563385 -146220168 - L1MCc LINE L1 -5517 1530 1442 532 305 147 31 chr11 4563476 4563925 -146219628 - L1MCc LINE L1 -5850 1197 697 215 317 143 19 chr11 4564077 4564238 -146219315 + MER5A DNA MER1_type 4 184 -5 195 100 0 0 chr11 4564379 4564409 -146219144 + (CA)n Simple_repeat Simple_repeat 2 31 0 665 333 24 4 chr11 4564497 4564749 -146218804 + MIR SINE MIR 5 261 -1 213 289 0 0 chr11 4565751 4565796 -146217757 - MER5B DNA MER1_type -8 170 126 322 235 43 43 chr11 4565812 4565927 -146217626 - L1ME1 LINE L1 -210 5956 5842 366 307 51 31 chr11 4565939 4566328 -146217225 + L1MEc LINE L1 1580 1880 -4502 329 107 0 18 chr11 4566351 4566407 -146217146 + (TTC)n Simple_repeat Simple_repeat 2 56 0 345 282 301 0 chr11 4566882 4567045 -146216508 - MIR SINE MIR -23 239 28 2317 222 58 30 chr11 4567958 4569275 -146214278 + L1M2 LINE L1 2295 3652 -3196 550 290 68 17 chr11 4569490 4569783 -146213770 + L1M2 LINE L1 3635 3942 -2906 873 199 10 10 chr11 4569783 4569979 -146213574 + L1M2 LINE L1 4451 4646 -2202 * 4001 203 19 8 chr11 4569978 4570985 -146212568 + L1M2 LINE L1 5164 6178 -743 894 184 6 17 chr11 4571730 4571904 -146211649 + FRAM SINE Alu 1 167 -9 245 387 73 0 chr11 4572608 4572745 -146210808 - MIR SINE MIR -99 163 17 25 65 0 0 chr11 4573629 4573675 -146209878 + AT_rich Low_complexity Low_complexity 1 46 0 1288 223 38 3 chr11 4573801 4574092 -146209461 - MER82 DNA MER2_type -154 499 199 1432 186 108 41 chr11 4574196 4574565 -146208988 + LTR54B LTR ERV1 1 409 -89 1711 155 55 0 chr11 4574565 4574856 -146208697 - AluSx SINE Alu -4 308 2 1432 186 108 41 chr11 4574856 4574949 -146208604 + LTR54B LTR ERV1 409 494 -4 595 253 52 26 chr11 4575380 4575534 -146208019 - MER82 DNA MER2_type -451 202 45 1071 216 132 70 chr11 4575549 4576048 -146207505 - MER61E LTR ERV1 -39 530 1 369 0 0 0 chr11 4576096 4576137 -146207416 + (TG)n Simple_repeat Simple_repeat 2 42 0 1841 258 36 37 chr11 4576175 4576976 -146206577 - L1MA8 LINE L1 0 6355 8 279 150 17 0 chr11 4577254 4577314 -146206239 - LTR54B LTR ERV1 -13 485 425 343 247 12 12 chr11 4577824 4577905 -146205648 - MIR SINE MIR -110 152 72 187 323 31 15 chr11 4577945 4578010 -146205543 - MIR SINE MIR -196 66 1 228 35 0 0 chr11 4578631 4578660 -146204893 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2302 72 0 0 chr11 4578662 4578952 -146204601 - AluY SINE Alu -21 290 1 21 0 0 0 chr11 4579457 4579478 -146204075 + AT_rich Low_complexity Low_complexity 1 21 0 2439 149 4 30 chr11 4580036 4580498 -146203055 + L1MA4 LINE L1 5844 6293 -7 21 0 0 0 chr11 4582956 4582977 -146200576 + AT_rich Low_complexity Low_complexity 1 21 0 2030 109 0 3 chr11 4583652 4583971 -146199582 - AluSx SINE Alu 0 318 1 277 343 0 0 chr11 4584954 4585056 -146198497 - MLT1L LTR MaLR -372 243 142 2207 105 3 0 chr11 4585267 4585573 -146197980 + AluSp SINE Alu 1 307 -6 42 82 0 0 chr11 4585875 4585973 -146197580 + AT_rich Low_complexity Low_complexity 1 98 0 393 197 13 0 chr11 4585993 4586069 -146197484 + Charlie3 DNA MER1_type 1 77 -2633 23 0 0 0 chr11 4586899 4586922 -146196631 + AT_rich Low_complexity Low_complexity 1 23 0 495 301 31 35 chr11 4587469 4587649 -146195904 - L1ME LINE L1 -362 5800 5620 1915 152 27 24 chr11 4587649 4588023 -146195530 + THE1C LTR MaLR 1 375 0 495 301 31 35 chr11 4588023 4588071 -146195482 - L1ME LINE L1 -542 5620 5573 381 268 70 23 chr11 4588074 4588315 -146195238 - L1ME LINE L1 -649 5517 5268 209 60 100 0 chr11 4588345 4588395 -146195158 + (TA)n Simple_repeat Simple_repeat 1 55 0 1021 103 0 0 chr11 4588644 4588780 -146194773 - AluSc SINE Alu -13 296 161 285 286 0 0 chr11 4590619 4590703 -146192850 - L1MC4 LINE L1 -1344 6698 6615 * 290 215 51 0 chr11 4590628 4590707 -146192846 + L1MC4 LINE L1 6614 6696 -1346 21 0 0 0 chr11 4590812 4590833 -146192720 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr11 4590988 4591018 -146192535 + AT_rich Low_complexity Low_complexity 1 30 0 8054 68 0 8 chr11 4791697 4792829 -145990724 + L1P LINE L1 978 2100 -4046 22 0 0 0 chr11 4792929 4792951 -145990602 + GC_rich Low_complexity Low_complexity 1 22 0 649 222 8 0 chr11 4794469 4794595 -145988958 - Tigger1 DNA MER2_type -2290 128 2 2028 188 91 99 chr11 4794668 4795392 -145988161 + LTR8A LTR ERV1 1 718 -9 346 314 0 8 chr11 4796121 4796242 -145987311 + MER94 DNA DNA 15 134 0 23 0 0 0 chr11 4799374 4799397 -145984156 + AT_rich Low_complexity Low_complexity 1 23 0 34340 38 3 3 chr11 4799525 4804772 -145978781 + L1PA4 LINE L1 912 6153 -2 315 0 0 0 chr11 4806861 4806896 -145976657 + (CA)n Simple_repeat Simple_repeat 1 35 0 245 200 17 0 chr11 4807051 4807111 -145976442 + (CA)n Simple_repeat Simple_repeat 2 62 0 219 250 0 44 chr11 4807751 4807819 -145975734 + L2 LINE L2 3249 3313 0 24 67 0 0 chr11 4808098 4808143 -145975410 + AT_rich Low_complexity Low_complexity 1 45 0 201 357 133 0 chr11 4808975 4809073 -145974480 + L2 LINE L2 3156 3266 -6 1834 110 0 19 chr11 4809569 4809833 -145973720 + AluSq SINE Alu 14 272 -41 349 222 37 0 chr11 4809836 4809971 -145973582 + GA-rich Low_complexity Low_complexity 2 141 0 3870 96 7 4 chr11 4810453 4811003 -145972550 - MER41A LTR ERV1 -2 552 1 655 332 22 0 chr11 4811477 4811700 -145971853 + MIR SINE MIR 35 262 0 192 77 0 0 chr11 4812394 4812420 -145971133 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 24 0 0 0 chr11 4812798 4812822 -145970731 + AT_rich Low_complexity Low_complexity 1 24 0 216 143 0 0 chr11 4813743 4813785 -145969768 + (TTTC)n Simple_repeat Simple_repeat 4 45 0 285 338 152 22 chr11 4813866 4814135 -145969418 - L2 LINE L2 -18 3295 2992 3531 174 52 57 chr11 4814895 4816026 -145967527 - L1MA9 LINE L1 -73 6239 5109 1991 206 30 4 chr11 4816037 4816497 -145967056 + L1MA9 LINE L1 4628 5099 -1047 7592 76 0 6 chr11 4816575 4817623 -145965930 + L1PA3 LINE L1 8 1049 -5097 22977 40 2 0 chr11 4817724 4821405 -145962148 + L1PA3 LINE L1 2493 6182 0 310 321 126 14 chr11 4821454 4821731 -145961822 - L1MCa LINE L1 -4915 1511 1204 495 229 61 79 chr11 4821735 4821949 -145961604 + MSTB1 LTR MaLR 212 421 -11 237 128 0 0 chr11 4823035 4823082 -145960471 + (TC)n Simple_repeat Simple_repeat 1 47 0 722 258 19 0 chr11 4826078 4826233 -145957320 - FRAM SINE Alu -9 167 10 206 264 92 35 chr11 4826244 4826331 -145957222 + MIR3 SINE MIR 113 204 -4 196 223 11 11 chr11 4827615 4827709 -145955844 + (TA)n Simple_repeat Simple_repeat 1 94 0 380 256 30 6 chr11 4827723 4827891 -145955662 + (TA)n Simple_repeat Simple_repeat 1 172 0 234 411 61 17 chr11 4827947 4828127 -145955426 - L2 LINE L2 -188 3084 2897 298 373 128 33 chr11 4828460 4829371 -145954182 - L2 LINE L2 -534 2780 1783 731 323 86 10 chr11 4829378 4829834 -145953719 + L2 LINE L2 2685 3185 -128 554 68 0 0 chr11 4829869 4829942 -145953611 - MADE1 DNA Mariner -7 73 1 25 31 0 0 chr11 4830063 4830095 -145953458 + AT_rich Low_complexity Low_complexity 1 32 0 307 385 24 61 chr11 4830158 4830405 -145953148 - L2 LINE L2 -82 3190 2953 213 382 55 30 chr11 4830673 4830872 -145952681 - L2 LINE L2 -690 2624 2421 255 337 61 32 chr11 4830889 4831135 -145952418 - L2 LINE L2 -1034 2280 2028 262 335 101 59 chr11 4833154 4833441 -145950112 + L2 LINE L2 3012 3310 -3 531 157 22 0 chr11 4833652 4833741 -145949812 + AluJ/FLAM SINE Alu 1 91 -221 1428 199 32 0 chr11 4833742 4833993 -145949560 + AluJo SINE Alu 50 308 -4 2534 59 0 0 chr11 4834537 4834841 -145948712 + AluY SINE Alu 1 304 -7 374 319 59 0 chr11 4834843 4835012 -145948541 + L1ME LINE L1 5485 5663 -458 186 287 202 0 chr11 4835024 4835118 -145948435 + L2 LINE L2 3192 3304 -9 217 224 0 0 chr11 4835491 4835540 -145948013 + (ATG)n Simple_repeat Simple_repeat 3 51 0 462 256 103 39 chr11 4835593 4835796 -145947757 - MIR SINE MIR -44 218 3 240 191 63 0 chr11 4835979 4836042 -145947511 - L1MC1 LINE L1 -1 6332 6266 600 226 40 22 chr11 4836066 4836247 -145947306 - MIR SINE MIR -14 248 63 213 308 0 0 chr11 4836532 4836584 -145946969 + L2 LINE L2 2914 2965 -307 184 353 0 0 chr11 4837627 4837678 -145945875 - MIR SINE MIR -131 131 81 338 325 113 0 chr11 4837891 4838042 -145945511 - MIR SINE MIR -93 169 2 10649 34 9 1 chr11 4838066 4840117 -145943436 + L1PA4 LINE L1 4079 6148 -7 2135 139 35 16 chr11 4840480 4840848 -145942705 + THE1C LTR MaLR 1 375 0 186 346 79 10 chr11 4841306 4841407 -145942146 - MIR SINE MIR -72 190 83 180 200 0 0 chr11 4841670 4841715 -145941838 + A-rich Low_complexity Low_complexity 1 45 0 366 333 18 9 chr11 4842488 4842599 -145940954 + L2 LINE L2 2981 3092 -180 513 230 11 11 chr11 4843807 4843981 -145939572 + CT-rich Low_complexity Low_complexity 1 174 0 1636 195 30 10 chr11 4844017 4844320 -145939233 - AluJb SINE Alu 0 312 4 3069 83 106 176 chr11 4846126 4847051 -145936502 + LTR12 LTR ERV1 1 2428 -10 363 332 93 10 chr11 4847189 4847382 -145936171 - MIR SINE MIR -48 214 6 361 248 28 28 chr11 4847423 4847532 -145936021 - L2 LINE L2 -6 3307 3199 358 357 41 26 chr11 4848889 4849158 -145934395 + L1M4 LINE L1 2466 2738 -3408 299 263 18 9 chr11 4849158 4849272 -145934281 + L1ME3A LINE L1 6049 6163 -7 312 322 59 59 chr11 4849324 4849563 -145933990 - HAL1 LINE L1 -2151 356 118 463 125 0 23 chr11 4850338 4850426 -145933127 + (TTCC)n Simple_repeat Simple_repeat 3 88 0 1523 247 146 0 chr11 4850520 4851035 -145932518 + MER90 LTR ERV1 3 592 -22 349 286 79 62 chr11 4851369 4851610 -145931943 + L1ME LINE L1 1075 1319 -5097 563 290 106 24 chr11 4851618 4852220 -145931333 + L1ME LINE L1 1152 2013 -4594 514 186 21 0 chr11 4852469 4852566 -145930987 + Tigger3b DNA MER2_type 1 99 -1132 * 5153 145 42 4 chr11 4852538 4853494 -145930059 + Tigger3b DNA MER2_type 240 1231 0 1419 227 36 74 chr11 4853576 4854101 -145929452 + MLT1D LTR MaLR 1 505 0 41609 40 7 0 chr11 4854313 4860471 -145923082 + L1PA3 LINE L1 3 6198 0 3077 90 2 0 chr11 4860479 4860900 -145922653 + L1PA7 LINE L1 5733 6154 0 1423 210 49 9 chr11 4861386 4861714 -145921839 - MER2 DNA MER2_type 0 344 4 317 335 62 11 chr11 4861720 4861899 -145921654 + MIR SINE MIR 53 240 -22 23 54 0 0 chr11 4862538 4862575 -145920978 + AT_rich Low_complexity Low_complexity 1 37 0 225 267 40 13 chr11 4863418 4863493 -145920060 + MIR SINE MIR 175 251 -11 264 337 192 4 chr11 4863694 4863949 -145919604 - L2 LINE L2 -1210 2104 1802 2502 146 9 16 chr11 4866218 4866350 -145917203 - MER61B LTR ERV1 0 425 294 287 25 25 0 chr11 4866350 4866390 -145917163 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 2502 146 9 16 chr11 4866390 4866681 -145916872 - MER61B LTR ERV1 -131 294 5 2196 66 7 10 chr11 4866708 4867009 -145916544 + AluY SINE Alu 1 300 -11 3619 206 36 33 chr11 4867952 4868637 -145914916 + L1MC3 LINE L1 5726 6416 -1369 2953 203 122 6 chr11 4868637 4869342 -145914211 + LTR48 LTR ERV1 1 787 0 3619 206 36 33 chr11 4869342 4869635 -145913918 + L1MC3 LINE L1 6416 6707 -1078 743 243 57 29 chr11 4869838 4870220 -145913333 + Charlie2 DNA MER1_type 2413 2805 -57 991 167 69 0 chr11 4870220 4870424 -145913129 - Tigger1 DNA MER2_type -1 2417 2200 2156 150 26 3 chr11 4870535 4870922 -145912631 - L1MA4A LINE L1 -6 6297 5902 306 267 35 69 chr11 4870945 4871061 -145912492 + MIR SINE MIR 1 112 -150 243 272 37 0 chr11 4871253 4871334 -145912219 + MIR SINE MIR 119 202 -60 239 133 22 0 chr11 4871933 4871978 -145911575 + (TATAA)n Simple_repeat Simple_repeat 5 50 0 22 35 0 0 chr11 4871979 4872008 -145911545 + AT_rich Low_complexity Low_complexity 1 29 0 1330 169 13 30 chr11 4872263 4872500 -145911053 + AluJo SINE Alu 71 303 -9 763 198 93 0 chr11 4872694 4872856 -145910697 + MER5B DNA MER1_type 1 177 -1 270 288 99 11 chr11 4873427 4873518 -145910035 - MIR SINE MIR -102 106 20 347 327 101 12 chr11 4873781 4873949 -145909604 - L3 LINE CR1 -48 1529 1347 359 294 24 76 chr11 4874030 4874241 -145909312 + L2 LINE L2 3114 3313 0 201 403 57 8 chr11 4874551 4874675 -145908878 + L2 LINE L2 3141 3270 -2 240 379 148 6 chr11 4874679 4874848 -145908705 + L3 LINE CR1 1046 1238 -339 370 291 191 24 chr11 4874880 4875090 -145908463 + L3 LINE CR1 1331 1575 -2 198 284 222 37 chr11 4876161 4876323 -145907230 + MIR SINE MIR 1 192 -70 255 103 0 0 chr11 4877728 4877767 -145905786 + (TC)n Simple_repeat Simple_repeat 2 40 0 652 333 6 6 chr11 4878171 4878354 -145905199 - MER5A DNA MER1_type -5 184 2 368 314 9 0 chr11 4878495 4878600 -145904953 - MER5A DNA MER1_type -83 106 1 302 320 66 40 chr11 4881209 4881481 -145902072 + L2 LINE L2 1819 2097 -1217 2805 44 3 0 chr11 4884396 4884738 -145898815 + L1PA5 LINE L1 5804 6146 -8 239 215 38 0 chr11 4884824 4884903 -145898650 + L1MC4 LINE L1 7960 8041 -1 189 359 26 13 chr11 4885210 4885288 -145898265 - L2 LINE L2 -87 3185 3107 479 272 92 29 chr11 4885774 4886021 -145897532 + LTR33A LTR ERVL 161 462 -61 892 281 141 23 chr11 4886035 4886715 -145896838 + LTR50 LTR ERVL 1 791 -4 214 335 53 21 chr11 4887986 4888108 -145895445 + MIR3 SINE MIR 14 138 -103 2130 127 0 0 chr11 4888588 4888879 -145894674 + AluSx SINE Alu 3 293 -19 184 346 103 9 chr11 4888913 4889020 -145894533 - MIR3 SINE MIR -87 121 5 938 50 0 0 chr11 4889259 4889379 -145894174 - L1PA8A LINE L1 -187 5944 5825 373 74 0 0 chr11 4889379 4889429 -145894124 + L1PA8 LINE L1 6117 6170 -2 236 296 54 18 chr11 4889500 4889611 -145893942 + MIR SINE MIR 106 256 -6 2367 63 6 31 chr11 4890702 4891021 -145892532 + AluY SINE Alu 1 311 0 215 324 43 2 chr11 4893205 4893391 -145890162 - MIR SINE MIR -1 261 24 510 181 0 0 chr11 4894011 4894116 -145889437 + GA-rich Low_complexity Low_complexity 2 106 0 666 136 42 8 chr11 4895013 4895131 -145888422 - L1PA15 LINE L1 0 6816 6695 1868 167 16 0 chr11 4895137 4895460 -145888093 + MSTA LTR MaLR 21 348 -80 6998 199 19 7 chr11 4895489 4897891 -145885662 - L1PA15 LINE L1 -111 6705 4279 5107 115 25 28 chr11 4897929 4898815 -145884738 + L1PA13 LINE L1 5280 6162 -1 491 256 63 0 chr11 4898811 4899002 -145884551 - L1PA15 LINE L1 -4817 1970 1768 * 1676 259 11 5 chr11 4899328 4899776 -145883777 - L1PA15 LINE L1 -4996 1791 1341 1806 300 43 34 chr11 4900004 4900747 -145882806 - L1PA15 LINE L1 -6037 750 1 6501 21 4 16 chr11 4903048 4903679 -145879874 - L1PA2 LINE L1 -6 6149 5529 2763 16 0 0 chr11 4903679 4903985 -145879568 + AluYa5 SINE Alu 1 306 -5 6501 21 4 16 chr11 4903985 4904171 -145879382 - L1PA2 LINE L1 -626 5529 5342 5717 29 7 0 chr11 4904169 4904899 -145878654 + L1PA2 LINE L1 4598 5332 -814 * 406 361 12 0 chr11 4908835 4909004 -145874549 + MER5B DNA MER1_type 5 175 -3 561 315 119 39 chr11 4909249 4909769 -145873784 + L2 LINE L2 2232 2793 -521 2256 118 0 0 chr11 4910110 4910406 -145873147 + AluSg SINE Alu 1 296 -14 221 340 128 0 chr11 4910518 4910612 -145872941 + MIR SINE MIR 48 153 -109 184 283 250 0 chr11 4911456 4911548 -145872005 - MIR SINE MIR -60 148 34 377 266 55 9 chr11 4911656 4911765 -145871788 - MER81 DNA DNA 0 114 1 262 346 40 0 chr11 4911767 4911868 -145871685 + MIR SINE MIR 38 142 -120 240 86 0 0 chr11 4912609 4912644 -145870909 + (TG)n Simple_repeat Simple_repeat 1 35 0 279 352 92 5 chr11 4912851 4913047 -145870506 - MIR SINE MIR -3 259 47 457 318 58 71 chr11 4914005 4914540 -145869013 + L2 LINE L2 2770 3298 -15 326 296 191 16 chr11 4914953 4915142 -145868411 - MIR SINE MIR 0 262 41 510 309 7 20 chr11 4915435 4915587 -145867966 + MIR SINE MIR 28 177 -85 1194 199 23 4 chr11 4915672 4915934 -145867619 + L1MA10 LINE L1 6000 6266 -68 40634 35 22 1 chr11 4916256 4922368 -145861185 + L1PA2 LINE L1 1 6241 0 315 244 92 24 chr11 4923391 4923535 -145860018 - MIR SINE MIR -59 203 45 1234 245 102 22 chr11 4924283 4924568 -145858985 + L2 LINE L2 2740 3001 -312 1973 155 25 50 chr11 4924568 4924968 -145858585 + MLT1B LTR MaLR 1 390 0 1234 245 102 22 chr11 4924968 4925200 -145858353 + L2 LINE L2 3001 3302 -11 294 384 16 0 chr11 4925846 4925971 -145857582 + MIR3 SINE MIR 11 137 -71 224 336 25 33 chr11 4926115 4926237 -145857316 - MIR SINE MIR -83 179 59 276 315 27 63 chr11 4926261 4926372 -145857181 - MIR SINE MIR -81 127 21 771 244 122 0 chr11 4928827 4929040 -145854513 + MIR SINE MIR 12 250 -12 186 282 39 13 chr11 4929115 4929193 -145854360 + MIR SINE MIR 156 235 -27 22 0 0 0 chr11 4929669 4929691 -145853862 + AT_rich Low_complexity Low_complexity 1 22 0 242 158 26 0 chr11 4929937 4929975 -145853578 + L2 LINE L2 3213 3251 -21 21 36 0 0 chr11 4931194 4931222 -145852331 + AT_rich Low_complexity Low_complexity 1 28 0 1915 136 8 0 chr11 4931437 4931701 -145851852 - AluSq SINE Alu -47 266 1 218 308 0 96 chr11 4931828 4931932 -145851621 + MIR3 SINE MIR 10 103 -105 452 289 123 24 chr11 4933374 4933585 -145849968 + MIR SINE MIR 28 259 -3 643 281 0 6 chr11 4933767 4933938 -145849615 + L1M3c LINE L1 1357 1526 -5970 * 1531 236 73 25 chr11 4933933 4934684 -145848869 + L1M3c LINE L1 2943 3737 -3828 2227 190 28 20 chr11 4934704 4935162 -145848391 - MER88 LTR ERVL -2 462 1 201 250 23 0 chr11 4935858 4935902 -145847651 + GA-rich Low_complexity Low_complexity 2 46 0 1429 92 67 0 chr11 4936036 4936231 -145847322 + AluSg/x SINE Alu 87 294 -18 1039 225 9 0 chr11 4936532 4936754 -145846799 + HERVL74 LTR ERVL 1869 2092 -3593 4148 208 11 34 chr11 4936768 4937700 -145845853 + HERVL74 LTR ERVL 2428 3337 -2348 912 177 0 12 chr11 4937685 4937849 -145845704 + HERVL74 LTR ERVL 3479 3640 -2045 * 545 328 131 35 chr11 4938180 4938690 -145844863 + L2 LINE L2 2133 2691 -623 489 185 130 100 chr11 4939259 4939459 -145844094 + MER65A LTR ERV1 1 206 -239 342 229 44 66 chr11 4939596 4939779 -145843774 + MER65A LTR ERV1 267 445 0 341 376 19 19 chr11 4940262 4940467 -145843086 + L2 LINE L2 2751 2955 -359 1794 48 4 4 chr11 4940608 4940839 -145842714 - L1PA6 LINE L1 -7 6147 5917 438 326 153 42 chr11 4940839 4941370 -145842183 + L2 LINE L2 2465 3094 -219 680 266 34 34 chr11 4941440 4941647 -145841906 + MIR SINE MIR 20 226 -36 380 352 23 8 chr11 4941678 4941806 -145841747 + L2 LINE L2 3134 3263 -9 228 250 110 0 chr11 4941823 4941923 -145841630 + L1ME4a LINE L1 5840 5950 -171 714 284 87 18 chr11 4942704 4942933 -145840620 + MIR SINE MIR 13 257 -5 2453 103 39 25 chr11 4944320 4944679 -145838874 - THE1B LTR MaLR 0 364 1 275 360 55 55 chr11 4945248 4945629 -145837924 + L2 LINE L2 2910 3290 -23 2121 286 143 52 chr11 4949118 4950264 -145833289 - L2 LINE L2 -767 2547 1507 3534 77 41 0 chr11 4950264 4950706 -145832847 - LTR46 LTR ERV1 0 460 1 2121 286 143 52 chr11 4950706 4950730 -145832823 - L2 LINE L2 -1807 1507 1487 845 227 32 16 chr11 4950730 4950915 -145832638 + MER5A DNA MER1_type 2 189 0 2121 286 143 52 chr11 4950915 4951077 -145832476 - L2 LINE L2 -1827 1487 1092 574 354 108 6 chr11 4951121 4951474 -145832079 - L2 LINE L2 -2810 504 116 950 296 148 10 chr11 4951675 4952326 -145831227 + L2 LINE L2 2507 3263 -50 511 246 81 0 chr11 4958195 4958334 -145825219 - MIR SINE MIR -49 213 63 357 257 140 29 chr11 4959050 4959221 -145824332 - MIR SINE MIR -44 218 29 2151 130 0 3 chr11 4960050 4960350 -145823203 + AluSx SINE Alu 1 299 -13 198 0 0 0 chr11 4960784 4960806 -145822747 + (TA)n Simple_repeat Simple_repeat 2 23 0 2266 127 0 0 chr11 4960806 4961113 -145822440 - AluSx SINE Alu -5 307 1 329 294 29 52 chr11 4962453 4962589 -145820964 - MIR SINE MIR -109 153 21 577 233 109 57 chr11 4962787 4962947 -145820606 + MIR SINE MIR 25 198 -64 524 15 15 0 chr11 4962947 4963012 -145820541 + (TAGA)n Simple_repeat Simple_repeat 3 68 0 577 233 109 57 chr11 4963012 4963044 -145820509 + MIR SINE MIR 198 227 -35 475 344 54 13 chr11 4967147 4967371 -145816182 - MIR SINE MIR -10 252 20 1388 71 33 0 chr11 4967888 4968070 -145815483 + L1PA13 LINE L1 5975 6162 -1 2353 87 0 22 chr11 4968548 4968859 -145814694 + AluSg SINE Alu 1 304 -6 203 308 0 15 chr11 4969677 4969742 -145813811 - MIR3 SINE MIR -139 69 6 3586 80 14 12 chr11 4969769 4970254 -145813299 - LTR15 LTR ERV1 -7 486 1 858 249 12 70 chr11 4970919 4971176 -145812377 + MIR SINE MIR 21 262 0 2180 127 3 0 chr11 4971270 4971570 -145811983 - AluSx SINE Alu -11 301 1 228 322 96 17 chr11 4972758 4972873 -145810680 + MIR SINE MIR 90 213 -49 27 29 0 0 chr11 4974219 4974253 -145809300 + AT_rich Low_complexity Low_complexity 1 34 0 2253 119 3 0 chr11 4974410 4974721 -145808832 + AluSx SINE Alu 1 312 0 28 0 0 0 chr11 4974836 4974864 -145808689 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr11 4974983 4975015 -145808538 + AT_rich Low_complexity Low_complexity 1 32 0 8866 221 23 13 chr11 4975389 4976347 -145807206 - L1P4 LINE L1 -735 5431 4485 2373 76 0 22 chr11 4976347 4976661 -145806892 - AluY SINE Alu -4 307 1 8866 221 23 13 chr11 4976661 4976714 -145806839 - L1P4 LINE L1 -1681 4485 4434 288 77 0 0 chr11 4976714 4976753 -145806800 + (TG)n Simple_repeat Simple_repeat 1 39 0 8866 221 23 13 chr11 4976753 4977969 -145805584 - L1P4 LINE L1 -1732 4434 3178 1945 72 0 4 chr11 4978039 4978275 -145805278 + AluY SINE Alu 67 301 -10 1291 175 74 21 chr11 4978904 4979189 -145804364 - L1 LINE L1 -2147 3999 3700 * 2868 185 12 0 chr11 4979184 4979746 -145803807 + L1 LINE L1 3985 4553 -1593 612 149 0 0 chr11 4979748 4979842 -145803711 + L1PB4 LINE L1 6063 6156 0 1863 168 35 23 chr11 4980370 4980764 -145802789 + L1MA7 LINE L1 5889 6287 -4 388 272 24 16 chr11 4980907 4981032 -145802521 + MIR SINE MIR 20 145 -63 345 257 40 20 chr11 4981050 4981202 -145802351 + L2 LINE L2 2804 2958 -314 28 29 0 0 chr11 4981243 4981278 -145802275 + AT_rich Low_complexity Low_complexity 1 35 0 337 264 132 35 chr11 4981287 4981431 -145802122 + L2 LINE L2 3156 3313 0 5426 78 4 13 chr11 4981433 4982138 -145801415 - L1PA13 LINE L1 0 6163 5465 300 287 25 25 chr11 4984436 4984558 -145798995 + MER94 DNA DNA 1 122 -12 243 225 48 100 chr11 4985620 4985777 -145797776 + L1MC4 LINE L1 7402 7530 -431 2409 76 0 0 chr11 4985777 4986078 -145797475 - AluSx SINE Alu -11 301 1 243 225 48 100 chr11 4986078 4986229 -145797324 + L1MC4 LINE L1 7530 7687 -274 390 275 47 109 chr11 4986257 4986471 -145797082 + MIR SINE MIR 1 196 -66 2236 99 3 7 chr11 4986471 4986765 -145796788 - AluSg SINE Alu -17 293 1 390 275 47 109 chr11 4986765 4986826 -145796727 + MIR SINE MIR 196 259 -3 212 318 32 0 chr11 4987642 4987705 -145795848 + MIR SINE MIR 47 111 -151 1429 176 0 0 chr11 4987878 4988105 -145795448 - L1PB3 LINE L1 -7 6147 5921 1516 188 120 0 chr11 4988948 4989256 -145794297 + MER7A DNA MER2_type 3 345 -1 218 309 9 91 chr11 4990071 4990181 -145793372 - L2 LINE L2 0 3313 3213 315 267 182 40 chr11 4991894 4992070 -145791483 - MIR SINE MIR -4 258 58 486 270 122 0 chr11 4992575 4992723 -145790830 - MIR SINE MIR -69 193 28 274 372 78 52 chr11 4993160 4993504 -145790049 - L2 LINE L2 -1 3271 2919 247 330 57 0 chr11 4993595 4993683 -145789870 - L2 LINE L2 -44 3228 3136 25 31 0 0 chr11 4993844 4993876 -145789677 + AT_rich Low_complexity Low_complexity 1 32 0 365 300 62 31 chr11 4993930 4994090 -145789463 - MIR SINE MIR -97 165 1 207 383 12 0 chr11 4994097 4994178 -145789375 - L2 LINE L2 -285 2987 2906 198 0 0 0 chr11 4994208 4994230 -145789323 + (TGG)n Simple_repeat Simple_repeat 1 22 0 359 179 0 13 chr11 4994276 4994354 -145789199 + GA-rich Low_complexity Low_complexity 2 78 0 501 47 0 0 chr11 4994355 4994419 -145789134 + (GGAA)n Simple_repeat Simple_repeat 2 65 0 451 297 59 18 chr11 4994634 4994856 -145788697 + MIR SINE MIR 1 231 -31 21 57 0 0 chr11 4994868 4994903 -145788650 + AT_rich Low_complexity Low_complexity 1 35 0 282 184 158 53 chr11 4995612 4995688 -145787865 + MER96 DNA MER1_type? 1 84 -91 296 294 76 21 chr11 4997065 4997303 -145786250 - L1ME4a LINE L1 -17 6104 5854 4609 108 75 11 chr11 4997396 4998125 -145785428 - L1PA13 LINE L1 0 6163 5388 2182 54 65 7 chr11 4998321 4998599 -145784954 + AluY SINE Alu 2 295 -16 25 65 0 0 chr11 4999200 4999246 -145784307 + AT_rich Low_complexity Low_complexity 1 46 0 2262 117 0 0 chr11 5001628 5001935 -145781618 + AluSx SINE Alu 1 307 -5 471 279 80 40 chr11 5002589 5002815 -145780738 - LTR68 LTR ERV1 -505 235 1 452 297 104 16 chr11 5003210 5003402 -145780151 + MER63A DNA MER1_type 1 209 -1 3116 197 66 8 chr11 5003614 5004268 -145779285 - L1MB5 LINE L1 -8 6166 5475 204 89 0 54 chr11 5004268 5004324 -145779229 + (TA)n Simple_repeat Simple_repeat 2 54 0 35 63 0 0 chr11 5004877 5004940 -145778613 + AT_rich Low_complexity Low_complexity 1 63 0 245 203 31 16 chr11 5005308 5005372 -145778181 - LTR54 LTR ERV1 -47 463 399 2684 242 55 6 chr11 5007507 5008233 -145775320 + L1MB7 LINE L1 323 1084 -5196 3055 103 0 0 chr11 5008234 5008640 -145774913 + L1P3 LINE L1 1 406 -6055 2456 94 1 80 chr11 5008647 5008803 -145774750 + L1P3 LINE L1 5328 5495 -659 721 48 0 0 chr11 5008803 5008887 -145774666 + AluSg/x SINE Alu 215 298 -12 2456 94 1 80 chr11 5008887 5009168 -145774385 + L1P3 LINE L1 5495 5756 -398 1119 219 59 22 chr11 5009164 5009484 -145774069 + L1MB7 LINE L1 1161 1492 -4892 * 27 29 0 0 chr11 5009810 5009844 -145773709 + AT_rich Low_complexity Low_complexity 1 34 0 209 401 6 0 chr11 5010389 5010556 -145772997 + (CCA)n Simple_repeat Simple_repeat 1 168 0 2163 84 3 11 chr11 5011224 5011508 -145772045 - AluSp SINE Alu -10 303 22 792 237 11 12 chr11 5011555 5011775 -145771778 + L1MB7 LINE L1 1471 2059 -4324 284 243 14 0 chr11 5011760 5011834 -145771719 + L1MB7 LINE L1 4188 4262 -2120 * 378 245 0 101 chr11 5011836 5011928 -145771625 + L1MB7 LINE L1 4387 4452 -1930 2459 60 7 0 chr11 5011928 5012228 -145771325 + AluY SINE Alu 1 302 -9 378 245 0 101 chr11 5012228 5012323 -145771230 + L1MB7 LINE L1 4452 4555 -1827 452 211 0 0 chr11 5012325 5012420 -145771133 + L1MB7 LINE L1 5252 5346 -1036 1389 151 0 47 chr11 5013747 5013842 -145769711 - AluSg SINE Alu -88 222 124 2111 115 0 36 chr11 5013842 5014146 -145769407 - AluSg SINE Alu -17 293 1 1389 151 0 47 chr11 5014146 5014282 -145769271 - AluSg SINE Alu -186 124 2 1064 155 12 0 chr11 5014283 5014444 -145769109 - AluSg/x SINE Alu -16 294 132 2898 55 0 3 chr11 5014444 5014789 -145768764 - SVA Other Other 0 1386 1043 3630 220 40 21 chr11 5014889 5015920 -145767633 + L1MB7 LINE L1 5351 6404 -16 253 123 18 18 chr11 5018867 5018924 -145764629 + GA-rich Low_complexity Low_complexity 2 58 0 234 0 0 0 chr11 5018924 5018950 -145764603 + (TG)n Simple_repeat Simple_repeat 2 27 0 190 210 0 49 chr11 5019669 5019750 -145763803 + (TATG)n Simple_repeat Simple_repeat 3 79 0 1985 113 0 15 chr11 5020145 5020419 -145763134 + AluSx SINE Alu 27 296 -16 724 201 152 0 chr11 5020680 5020844 -145762709 - MER5A DNA MER1_type 0 189 1 332 291 15 67 chr11 5020981 5021004 -145762549 - MIR SINE MIR -63 145 122 2568 37 0 3 chr11 5021004 5021302 -145762251 + AluY SINE Alu 15 311 0 332 291 15 67 chr11 5021302 5021412 -145762141 - MIR SINE MIR -86 122 19 2339 78 0 3 chr11 5021736 5022029 -145761524 - AluSg SINE Alu -18 292 1 21 57 0 0 chr11 5024023 5024058 -145759495 + AT_rich Low_complexity Low_complexity 1 35 0 567 248 75 37 chr11 5024903 5024985 -145758568 + MIR SINE MIR 41 118 -144 1753 190 3 0 chr11 5024985 5025290 -145758263 - AluSx SINE Alu -5 307 2 567 248 75 37 chr11 5025290 5025421 -145758132 + MIR SINE MIR 118 262 0 24 32 0 0 chr11 5025660 5025691 -145757862 + AT_rich Low_complexity Low_complexity 1 31 0 4271 49 0 0 chr11 5025691 5026180 -145757373 - L1PA5 LINE L1 0 6154 5666 358 385 34 6 chr11 5026206 5026385 -145757168 + L2 LINE L2 2869 3052 -261 747 269 103 17 chr11 5026551 5026935 -145756618 + L1MC/D LINE L1 5317 5744 -625 367 233 39 39 chr11 5027078 5027207 -145756346 + MIR SINE MIR 77 205 -57 298 233 69 74 chr11 5027224 5027413 -145756140 - L1ME LINE L1 -364 5757 5570 26 74 0 0 chr11 5027586 5027640 -145755913 + AT_rich Low_complexity Low_complexity 1 54 0 22 35 0 0 chr11 5027872 5027901 -145755652 + AT_rich Low_complexity Low_complexity 1 29 0 1205 194 109 107 chr11 5028234 5028785 -145754768 - MER34B LTR ERV1 -2 563 12 2113 187 5 29 chr11 5028790 5029164 -145754389 - MLT1A1 LTR MaLR 0 365 1 2177 119 0 3 chr11 5029212 5029515 -145754038 - AluSq SINE Alu -11 302 1 2290 110 3 0 chr11 5029597 5029905 -145753648 - AluY SINE Alu -2 309 1 2166 116 0 7 chr11 5030199 5030501 -145753052 - AluSx SINE Alu -12 300 1 730 248 78 53 chr11 5030645 5031056 -145752497 + LTR37A LTR ERV1 6 426 0 2787 161 13 23 chr11 5031112 5031721 -145751832 + pTR5 LTR ERV1 743 1345 -1093 3213 129 234 53 chr11 5031736 5032432 -145751121 + LTR12 LTR ERV1 5 826 0 2535 127 148 7 chr11 5032666 5032782 -145750771 - LTR45B LTR ERV1 0 489 391 2369 74 3 3 chr11 5032782 5033079 -145750474 + AluSp SINE Alu 1 297 -16 2535 127 148 7 chr11 5033079 5033389 -145750164 - LTR45B LTR ERV1 -98 391 3 950 251 64 20 chr11 5033693 5033944 -145749609 - MIR SINE MIR 0 262 1 308 300 0 47 chr11 5033981 5034050 -145749503 + GA-rich Low_complexity Low_complexity 2 73 -71 1945 175 7 0 chr11 5034050 5034358 -145749195 + AluJo SINE Alu 1 310 -2 308 300 0 47 chr11 5034358 5034438 -145749115 + GA-rich Low_complexity Low_complexity 73 144 0 1011 196 44 22 chr11 5035331 5035560 -145747993 - L1ME LINE L1 -347 5819 5586 1685 182 17 7 chr11 5035717 5036019 -145747534 - AluJb SINE Alu -7 305 1 1942 68 129 0 chr11 5037132 5037395 -145746158 - AluSc SINE Alu -12 297 1 182 171 24 0 chr11 5038040 5038081 -145745472 + C-rich Low_complexity Low_complexity 2 43 0 727 265 38 9 chr11 5038615 5038826 -145744727 + MIR SINE MIR 14 230 -32 278 264 19 55 chr11 5039389 5039479 -145744074 - MER5A DNA MER1_type 0 189 90 1122 183 115 0 chr11 5039969 5040248 -145743305 - MER33 DNA MER1_type -13 311 1 1290 235 81 40 chr11 5040315 5040745 -145742808 - L1ME1 LINE L1 -5 6161 5714 2421 57 0 0 chr11 5040891 5041216 -145742337 - AluY SINE Alu 0 325 1 217 359 165 0 chr11 5041687 5041893 -145741660 + MIR SINE MIR 19 258 -4 185 258 81 16 chr11 5042797 5042859 -145740694 + MIR SINE MIR 49 114 -148 2380 87 0 0 chr11 5042989 5043287 -145740266 + AluSx SINE Alu 1 298 -14 641 316 178 9 chr11 5043515 5043672 -145739881 - L2 LINE L2 -2 3311 3182 2078 82 0 11 chr11 5043672 5043951 -145739602 + AluY SINE Alu 1 276 -35 641 316 178 9 chr11 5043951 5044141 -145739412 - L2 LINE L2 -131 3182 2905 2121 127 0 0 chr11 5044187 5044487 -145739066 + AluSx SINE Alu 3 302 -10 1759 119 37 0 chr11 5045519 5045676 -145737877 - AluSx SINE Alu -22 290 117 240 35 0 0 chr11 5045676 5045705 -145737848 + (TG)n Simple_repeat Simple_repeat 2 30 0 1759 119 37 0 chr11 5045705 5045816 -145737737 - AluSx SINE Alu -195 117 12 1142 174 24 14 chr11 5047367 5047579 -145735974 - MER20 DNA MER1_type -5 214 1 2382 48 0 3 chr11 5048435 5048729 -145734824 + AluY SINE Alu 1 293 -18 308 269 167 43 chr11 5049291 5049477 -145734076 - L2 LINE L2 -955 2359 2151 199 313 83 10 chr11 5049532 5049628 -145733925 + L2 LINE L2 3193 3295 -18 433 145 96 0 chr11 5050148 5050231 -145733322 + AluSg/x SINE Alu 217 307 -3 710 72 0 0 chr11 5050361 5050458 -145733095 - AluSg/x SINE Alu -1 311 215 2170 86 0 10 chr11 5051162 5051454 -145732099 + AluSc SINE Alu 1 289 -20 10560 25 15 1 chr11 5151579 5152841 -145630712 + L1P LINE L1 3529 4808 -1338 1031 113 11 13 chr11 5152945 5154420 -145629133 + HSATII Satellite Satellite 1 1471 -1 785 100 0 21 chr11 5154443 5154583 -145628970 + HSATII Satellite Satellite 17 153 -17 911 121 23 14 chr11 5154599 5155087 -145628466 + HSATII Satellite Satellite 1 492 0 980 112 10 12 chr11 5155110 5156315 -145627238 + HSATII Satellite Satellite 1 1202 -27 998 108 8 14 chr11 5156342 5158476 -145625077 + HSATII Satellite Satellite 1 2120 -16 965 129 22 9 chr11 5158491 5158780 -145624773 + HSATII Satellite Satellite 1 292 -1 926 123 10 16 chr11 5158803 5160244 -145623309 + HSATII Satellite Satellite 1 1432 -1 1064 110 11 12 chr11 5160274 5164808 -145618745 + HSATII Satellite Satellite 1 4528 -23 941 120 15 14 chr11 5164823 5165454 -145618099 + HSATII Satellite Satellite 1 631 -137 935 113 6 12 chr11 5165467 5165961 -145617592 + HSATII Satellite Satellite 1 491 -99 977 99 9 16 chr11 5165990 5166564 -145616989 + HSATII Satellite Satellite 1 570 -16 998 104 8 18 chr11 5166602 5167100 -145616453 + HSATII Satellite Satellite 1 493 -23 974 132 12 13 chr11 5167115 5167566 -145615987 + HSATII Satellite Satellite 1 450 -1 959 110 13 12 chr11 5167596 5169348 -145614205 + HSATII Satellite Satellite 1 1754 -17 818 111 21 0 chr11 5169364 5169508 -145614045 + HSATII Satellite Satellite 1 147 -23 965 113 9 13 chr11 5169523 5169976 -145613577 + HSATII Satellite Satellite 1 451 -23 953 125 16 17 chr11 5169998 5171204 -145612349 + HSATII Satellite Satellite 1 1204 -1 998 110 17 12 chr11 5171234 5172967 -145610586 + HSATII Satellite Satellite 1 1741 -4 779 136 4 18 chr11 5172994 5173274 -145610279 + HSATII Satellite Satellite 1 276 -86 941 125 7 18 chr11 5173433 5174258 -145609295 + HSATII Satellite Satellite 1 816 0 998 117 9 14 chr11 5174281 5176010 -145607543 + HSATII Satellite Satellite 1 1720 -1 998 122 12 16 chr11 5176029 5176948 -145606605 + HSATII Satellite Satellite 1 915 -2 1031 115 19 12 chr11 5176979 5178695 -145604858 + HSATII Satellite Satellite 1 1727 -1 980 105 12 12 chr11 5178725 5180004 -145603549 + HSATII Satellite Satellite 1 1279 -23 953 126 15 19 chr11 5180026 5181232 -145602321 + HSATII Satellite Satellite 1 1201 -1 980 113 13 12 chr11 5181262 5182955 -145600598 + HSATII Satellite Satellite 1 1694 -51 932 109 7 15 chr11 5182989 5183582 -145599971 + HSATII Satellite Satellite 1 588 -11 694 149 18 18 chr11 5183615 5183838 -145599715 + HSATII Satellite Satellite 1 223 -94 980 98 6 14 chr11 5183938 5184585 -145598968 + HSATII Satellite Satellite 1 642 -26 977 121 11 16 chr11 5184610 5186831 -145596722 + HSATII Satellite Satellite 1 2210 -1 965 104 12 12 chr11 5186861 5188140 -145595413 + HSATII Satellite Satellite 1 1279 -23 932 117 18 20 chr11 5188162 5188897 -145594656 + HSATII Satellite Satellite 1 733 -1 887 140 9 20 chr11 5188923 5189368 -145594185 + HSATII Satellite Satellite 1 440 -1 980 107 12 12 chr11 5189398 5190674 -145592879 + HSATII Satellite Satellite 1 1276 -26 974 118 18 20 chr11 5190699 5191291 -145592262 + HSATII Satellite Satellite 1 590 0 1012 104 9 13 chr11 5191314 5192453 -145591100 + HSATII Satellite Satellite 1 1134 -23 1019 114 12 13 chr11 5192475 5194539 -145589014 + HSATII Satellite Satellite 1 2063 -1 1031 114 9 15 chr11 5194562 5200227 -145583326 + HSATII Satellite Satellite 1 5633 -23 998 115 11 16 chr11 5200242 5205100 -145578453 + HSATII Satellite Satellite 1 4833 -9 670 147 18 18 chr11 5205131 5205301 -145578252 + HSATII Satellite Satellite 1 170 0 907 122 10 13 chr11 5205326 5206488 -145577065 + HSATII Satellite Satellite 1 1158 -1 998 113 12 12 chr11 5206518 5210890 -145572663 + HSATII Satellite Satellite 1 4370 -8 1031 98 2 15 chr11 5210901 5211519 -145572034 + HSATII Satellite Satellite 1 610 -23 956 119 10 17 chr11 5211543 5212552 -145571001 + HSATII Satellite Satellite 1 1001 -19 980 111 11 11 chr11 5212571 5215411 -145568142 + HSATII Satellite Satellite 1 2840 -23 980 114 14 13 chr11 5215433 5217187 -145566366 + HSATII Satellite Satellite 1 1755 -23 1031 113 10 12 chr11 5217209 5222991 -145560562 + HSATII Satellite Satellite 1 5770 -15 998 118 13 14 chr11 5223005 5225945 -145557608 + HSATII Satellite Satellite 1 2936 -92 986 113 10 16 chr11 5226073 5227611 -145555942 + HSATII Satellite Satellite 1 1529 -9 781 129 18 18 chr11 5227642 5227812 -145555741 + HSATII Satellite Satellite 1 170 0 928 96 13 19 chr11 5227837 5228151 -145555402 + HSATII Satellite Satellite 1 312 -31 998 111 5 0 chr11 5228164 5228376 -145555177 + HSATII Satellite Satellite 1 213 -1 932 127 11 19 chr11 5228399 5229000 -145554553 + HSATII Satellite Satellite 1 596 -1 980 103 12 12 chr11 5229030 5230306 -145553247 + HSATII Satellite Satellite 1 1276 -26 965 137 14 19 chr11 5230331 5230776 -145552777 + HSATII Satellite Satellite 1 442 -1 982 114 12 12 chr11 5230806 5232090 -145551463 + HSATII Satellite Satellite 1 1285 -17 965 108 23 14 chr11 5232106 5232594 -145550959 + HSATII Satellite Satellite 1 492 0 944 121 9 15 chr11 5232617 5234200 -145549353 + HSATII Satellite Satellite 1 1573 -1 989 109 13 8 chr11 5234230 5235345 -145548208 + HSATII Satellite Satellite 1 1120 -8 965 103 7 19 chr11 5235356 5235977 -145547576 + HSATII Satellite Satellite 1 613 -23 932 143 14 19 chr11 5235999 5236444 -145547109 + HSATII Satellite Satellite 1 442 -1 1031 106 10 12 chr11 5236474 5239526 -145544027 + HSATII Satellite Satellite 1 3047 -23 980 117 10 16 chr11 5239539 5242609 -145540944 + HSATII Satellite Satellite 1 3051 -1 977 107 12 13 chr11 5242639 5244868 -145538685 + HSATII Satellite Satellite 1 2227 -27 980 112 14 13 chr11 5244884 5247650 -145535903 + HSATII Satellite Satellite 1 2766 0 965 119 9 17 chr11 5247681 5248517 -145535036 + HSATII Satellite Satellite 1 829 -1 998 114 13 14 chr11 5248547 5250908 -145532645 + HSATII Satellite Satellite 1 2358 0 27 62 0 0 chr11 5300929 5300977 -145482576 + AT_rich Low_complexity Low_complexity 1 48 0 6956 53 9 30 chr11 5300977 5301794 -145481759 - L1PA7 LINE L1 -4 6150 5349 2187 111 7 3 chr11 5301794 5302092 -145481461 + AluSp SINE Alu 1 299 -14 6956 53 9 30 chr11 5302092 5302454 -145481099 - L1PA7 LINE L1 -805 5349 4981 1041 241 38 70 chr11 5303391 5303902 -145479651 - PABL_B LTR ERV1 -21 646 10 3317 232 34 53 chr11 5304114 5305136 -145478417 + L1MB5 LINE L1 3156 4157 -1989 1389 124 16 31 chr11 5305136 5305393 -145478160 + L1MA3 LINE L1 6050 6302 -3 3317 232 34 53 chr11 5305393 5305470 -145478083 + L1MB5 LINE L1 4157 4234 -1912 2319 107 0 0 chr11 5305519 5305828 -145477725 - AluY SINE Alu -2 309 1 1952 200 51 51 chr11 5306246 5306795 -145476758 - L1PB4 LINE L1 -63 6093 5545 23 33 0 0 chr11 5307580 5307610 -145475943 + AT_rich Low_complexity Low_complexity 1 30 0 267 191 52 26 chr11 5309401 5309516 -145474037 + (TATAA)n Simple_repeat Simple_repeat 3 120 0 22 56 0 0 chr11 5309783 5309819 -145473734 + AT_rich Low_complexity Low_complexity 1 36 0 290 317 24 43 chr11 5310375 5310539 -145473014 + L2 LINE L2 1873 2033 -1281 278 276 0 13 chr11 5310582 5310658 -145472895 + L2 LINE L2 2164 2238 -1076 3578 234 23 26 chr11 5311085 5312082 -145471471 + L1MB5 LINE L1 4308 5301 -845 355 286 147 17 chr11 5312165 5312403 -145471150 + L1ME LINE L1 5525 5793 -377 1372 269 25 47 chr11 5312444 5312757 -145470796 + L1M4 LINE L1 2521 2839 -3307 220 20 59 39 chr11 5312757 5312808 -145470745 + (TA)n Simple_repeat Simple_repeat 1 52 0 1372 269 25 47 chr11 5312808 5312922 -145470631 + L1M4 LINE L1 2839 2954 -3192 1865 127 13 43 chr11 5312922 5313221 -145470332 + AluSx SINE Alu 2 291 -21 1372 269 25 47 chr11 5313221 5313521 -145470032 + L1M4 LINE L1 2954 3233 -2913 477 336 34 10 chr11 5313607 5313815 -145469738 + MIR SINE MIR 50 262 0 189 0 0 0 chr11 5314378 5314399 -145469154 + (A)n Simple_repeat Simple_repeat 1 21 0 653 174 16 5 chr11 5316059 5316245 -145467308 + L1MA4 LINE L1 6033 6297 -3 24 32 0 0 chr11 5316299 5316330 -145467223 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr11 5316680 5316708 -145466845 + AT_rich Low_complexity Low_complexity 1 28 0 2126 104 3 7 chr11 5316822 5317111 -145466442 - AluSc SINE Alu -21 288 1 195 187 165 44 chr11 5317209 5317300 -145466253 - L2 LINE L2 -4 3309 3208 21 0 0 0 chr11 5317553 5317574 -145465979 + AT_rich Low_complexity Low_complexity 1 21 0 209 321 71 9 chr11 5318369 5318481 -145465072 + MIR SINE MIR 137 255 -7 320 243 14 0 chr11 5319812 5319886 -145463667 - L1M4 LINE L1 -1983 4399 4325 * 336 229 16 16 chr11 5319884 5320006 -145463547 - L1M4 LINE L1 -3951 2433 2312 978 217 46 132 chr11 5320011 5320488 -145463065 + L1MB5 LINE L1 5326 5753 -431 2369 172 36 5 chr11 5320488 5320931 -145462622 - MSTB2 LTR MaLR 0 457 1 978 217 46 132 chr11 5320931 5320993 -145462560 + L1MB5 LINE L1 5753 5819 -365 604 220 16 44 chr11 5321227 5321409 -145462144 + L1MB5 LINE L1 5815 5991 -183 2399 82 7 0 chr11 5321587 5321892 -145461661 + AluSp SINE Alu 1 307 -6 2159 104 17 0 chr11 5322220 5322517 -145461036 + AluSq SINE Alu 1 302 -11 1085 177 14 50 chr11 5322678 5322898 -145460655 - AluJo SINE Alu -15 297 86 1899 129 26 26 chr11 5323469 5323779 -145459774 + AluSg SINE Alu 1 310 0 180 0 0 0 chr11 5324548 5324568 -145458985 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 294 282 46 8 chr11 5324628 5324769 -145458784 - MIR SINE MIR -64 144 13 21 0 0 0 chr11 5324860 5324881 -145458672 + AT_rich Low_complexity Low_complexity 1 21 0 256 352 37 0 chr11 5326627 5326735 -145456818 + MIR SINE MIR 18 129 -133 2329 103 3 0 chr11 5326736 5327048 -145456505 - AluSq SINE Alu 0 313 1 1571 111 0 8 chr11 5327095 5327339 -145456214 + L1MA6 LINE L1 6059 6300 0 28 29 0 0 chr11 5327679 5327714 -145455839 + AT_rich Low_complexity Low_complexity 1 35 0 1708 155 22 4 chr11 5327807 5328120 -145455433 - AluJb SINE Alu 0 318 1 381 22 0 0 chr11 5329880 5329926 -145453627 + (T)n Simple_repeat Simple_repeat 1 46 0 34 24 0 0 chr11 5329930 5329971 -145453582 + GC_rich Low_complexity Low_complexity 1 41 0 21 0 0 0 chr11 5330205 5330226 -145453327 + AT_rich Low_complexity Low_complexity 1 21 0 928 180 15 34 chr11 5330355 5330561 -145452992 + L1MB3 LINE L1 5918 6119 -64 2322 66 3 0 chr11 5331006 5331295 -145452258 - AluY SINE Alu -21 290 1 964 295 102 24 chr11 5331536 5331781 -145451772 + L1ME LINE L1 48 273 -5797 2326 89 0 0 chr11 5331781 5332074 -145451479 + AluSg SINE Alu 1 293 -17 964 295 102 24 chr11 5332074 5332330 -145451223 + L1ME LINE L1 273 588 -5482 1152 159 15 5 chr11 5332703 5332898 -145450655 - LTR1 LTR ERV1 0 785 589 3028 48 3 0 chr11 5332898 5333271 -145450282 - L1PA6 LINE L1 -7 6147 5774 606 41 0 0 chr11 5333271 5333344 -145450209 + L1P2 LINE L1 5620 5692 -462 400 245 14 35 chr11 5333373 5333516 -145450037 + L1ME LINE L1 49 188 -5882 2544 181 66 34 chr11 5333518 5334075 -145449478 - LTR1 LTR ERV1 -203 582 8 2231 102 3 16 chr11 5335618 5335932 -145447621 - AluSx SINE Alu 0 312 3 614 272 82 47 chr11 5335977 5336404 -145447149 - L1M4 LINE L1 -2040 4106 3665 1378 186 42 0 chr11 5336915 5337222 -145446331 + MER33 DNA MER1_type 5 324 0 296 315 87 75 chr11 5338315 5338731 -145444822 - MLT1J2 LTR MaLR -10 440 20 2249 206 93 8 chr11 5339086 5339751 -145443802 - L1M4 LINE L1 -3108 3038 2317 2275 103 3 0 chr11 5339763 5340074 -145443479 - AluSx SINE Alu 0 312 1 2486 25 0 59 chr11 5340109 5340432 -145443121 - AluY SINE Alu -7 304 1 402 152 3 2 chr11 5340447 5340516 -145443037 + AluSp/q SINE Alu 236 296 -7 24 0 0 0 chr11 5340609 5340633 -145442920 + AT_rich Low_complexity Low_complexity 1 24 0 2202 110 10 0 chr11 5340919 5341218 -145442335 - AluSq SINE Alu -11 302 1 24 0 0 0 chr11 5341218 5341242 -145442311 + AT_rich Low_complexity Low_complexity 1 24 0 571 330 13 51 chr11 5341616 5341668 -145441885 - MIR SINE MIR -23 239 187 2299 96 0 3 chr11 5341668 5341971 -145441582 - AluSq SINE Alu -11 302 1 571 330 13 51 chr11 5341971 5342154 -145441399 - MIR SINE MIR -75 187 13 712 254 30 6 chr11 5342186 5342351 -145441202 + MER58A DNA MER1_type 24 192 -32 1689 74 0 0 chr11 5342351 5342576 -145440977 + AluSg/x SINE Alu 83 307 0 1082 232 46 127 chr11 5343231 5343536 -145440017 - L1MCa LINE L1 -5571 651 323 2346 82 16 0 chr11 5343536 5343840 -145439713 - AluSx SINE Alu 0 312 4 1082 232 46 127 chr11 5343840 5344011 -145439542 - L1MCa LINE L1 -5899 323 141 2136 87 0 75 chr11 5344011 5344344 -145439209 - AluSg SINE Alu -2 308 1 1082 232 46 127 chr11 5344344 5344436 -145439117 - L1MCa LINE L1 -6081 141 43 667 131 0 10 chr11 5345457 5345556 -145437997 + MER4A LTR ERV1 1 98 -566 1753 153 179 20 chr11 5345556 5345903 -145437650 + MER4A LTR ERV1 261 662 -2 2327 100 0 0 chr11 5346007 5346316 -145437237 + AluY SINE Alu 1 309 -2 1164 121 29 0 chr11 5346316 5346489 -145437064 + AluSp SINE Alu 134 311 -2 1511 115 71 21 chr11 5346616 5346941 -145436612 - MER4A LTR ERV1 0 655 252 743 117 8 16 chr11 5346963 5347091 -145436462 - MER4A LTR ERV1 -537 127 1 387 64 0 291 chr11 5347146 5347199 -145436354 + MADE1 DNA Mariner 1 8 -72 2314 73 0 44 chr11 5347199 5347514 -145436039 - AluSg SINE Alu -1 309 9 387 64 0 291 chr11 5347514 5347570 -145435983 + MADE1 DNA Mariner 8 78 -2 219 292 0 0 chr11 5348022 5348070 -145435483 + MER5B DNA MER1_type 2 49 -129 443 254 124 6 chr11 5348085 5348262 -145435291 - L1ME1 LINE L1 -6 6160 5963 1017 190 46 32 chr11 5348437 5348653 -145434900 - MER20 DNA MER1_type 0 219 1 195 42 0 0 chr11 5349219 5349243 -145434310 + (TC)n Simple_repeat Simple_repeat 1 24 0 351 259 86 91 chr11 5350391 5350442 -145433111 - L2 LINE L2 -412 2902 2852 2110 121 0 7 chr11 5350442 5350740 -145432813 + AluSq SINE Alu 3 298 -15 351 259 86 91 chr11 5350740 5350942 -145432611 - L2 LINE L2 -462 2852 2649 2180 93 7 14 chr11 5350942 5351232 -145432321 + AluSq SINE Alu 5 292 -21 351 259 86 91 chr11 5351232 5351328 -145432225 - L2 LINE L2 -665 2649 2554 1635 225 29 44 chr11 5352528 5352837 -145430716 - MLT1C LTR MaLR 0 467 164 2386 98 0 0 chr11 5352837 5353134 -145430419 + AluSx SINE Alu 1 297 -15 1635 225 29 44 chr11 5353134 5353233 -145430320 - MLT1C LTR MaLR -303 164 65 2427 62 3 0 chr11 5353544 5353848 -145429705 - AluY SINE Alu -6 305 1 373 337 143 10 chr11 5355639 5355939 -145427614 - L2 LINE L2 -50 3263 2924 718 130 35 0 chr11 5356566 5356681 -145426872 - AluSg1 SINE Alu -189 120 2 494 62 0 16 chr11 5356709 5356773 -145426780 - LTR7 LTR ERV1 -42 408 346 351 0 0 0 chr11 5357994 5358036 -145425517 + (CA)n Simple_repeat Simple_repeat 1 81 0 351 0 0 0 chr11 5358036 5358075 -145425478 + (CA)n Simple_repeat Simple_repeat 2 40 0 2328 80 3 7 chr11 5358798 5359099 -145424454 - AluY SINE Alu -11 300 1 1581 223 41 8 chr11 5359382 5359750 -145423803 + L1MB7 LINE L1 5447 5826 -358 7723 24 0 76 chr11 5359854 5361514 -145422039 + L1PA3 LINE L1 4573 6155 0 1858 216 31 52 chr11 5361608 5362151 -145421402 - L1MA9 LINE L1 -30 6282 5751 39 22 0 0 chr11 5362926 5362972 -145420581 + AT_rich Low_complexity Low_complexity 1 46 0 207 114 0 0 chr11 5364609 5364644 -145418909 + (TG)n Simple_repeat Simple_repeat 2 36 0 22 0 0 0 chr11 5364894 5364916 -145418637 + AT_rich Low_complexity Low_complexity 1 22 0 210 37 0 0 chr11 5365703 5365730 -145417823 + (TTTTTA)n Simple_repeat Simple_repeat 4 30 0 2982 41 0 3 chr11 5365731 5366069 -145417484 - L1PA3 LINE L1 -3 6152 5816 615 251 53 112 chr11 5366630 5367004 -145416549 - MLT2C1 LTR ERVL -2 395 44 * 621 196 67 45 chr11 5366840 5367019 -145416534 - MLT1E3 LTR MaLR -393 231 49 428 316 22 7 chr11 5367024 5367163 -145416390 - MLT2F LTR ERVL -522 141 1 617 324 16 5 chr11 5367487 5367672 -145415881 + MER5A DNA MER1_type 3 189 0 228 200 0 0 chr11 5370032 5370092 -145413461 + (TATG)n Simple_repeat Simple_repeat 2 61 0 304 237 69 92 chr11 5370163 5370294 -145413259 - MIR SINE MIR -13 249 122 1738 60 9 0 chr11 5372824 5373040 -145410513 - L1PA5 LINE L1 -5 6149 5932 2383 81 7 3 chr11 5373046 5373353 -145410200 - AluY SINE Alu -3 308 1 2499 70 0 0 chr11 5374123 5374423 -145409130 - AluY SINE Alu -11 300 1 456 111 0 14 chr11 5375574 5375646 -145407907 - L1P LINE L1 -1268 4878 4808 2299 85 3 10 chr11 5376257 5376562 -145406991 - AluSq SINE Alu -10 303 1 3932 213 24 41 chr11 5376849 5377680 -145405873 + L1M2 LINE L1 1290 2101 -4748 2344 103 0 3 chr11 5377680 5377991 -145405562 + AluSg SINE Alu 1 310 0 3932 213 24 41 chr11 5377991 5378197 -145405356 + L1M2 LINE L1 2101 2309 -4540 1713 151 5 21 chr11 5378193 5378319 -145405234 + L1PA15 LINE L1 4366 4492 -1673 * 2466 90 0 3 chr11 5378319 5378630 -145404923 + AluY SINE Alu 1 310 -1 1713 151 5 21 chr11 5378630 5380221 -145403332 + L1PA15 LINE L1 4492 6158 -7 4648 234 55 7 chr11 5380224 5381228 -145402325 + ERVL LTR ERVL 2877 3928 -1836 * 5333 204 22 2 chr11 5381226 5382208 -145401345 + ERVL LTR ERVL 4325 5326 -438 2366 63 0 0 chr11 5382928 5383244 -145400309 - AluY SINE Alu 0 316 1 2214 118 0 0 chr11 5383648 5383935 -145399618 + AluSg SINE Alu 1 287 -23 288 303 58 10 chr11 5384576 5384730 -145398823 - MIR SINE MIR -64 144 13 330 161 42 8 chr11 5385353 5385471 -145398082 + (TA)n Simple_repeat Simple_repeat 1 122 0 301 175 10 136 chr11 5385483 5385586 -145397967 - L1MC4 LINE L1 -1339 6703 6614 2092 100 0 0 chr11 5386060 5386331 -145397222 - AluSq SINE Alu -12 301 31 1298 168 45 4 chr11 5386457 5386701 -145396852 - MSTB LTR MaLR -172 254 1 671 220 42 37 chr11 5386703 5386894 -145396659 + L1MA9 LINE L1 6083 6274 -38 199 362 116 15 chr11 5387097 5387296 -145396257 - MIR SINE MIR -26 236 18 23 54 0 0 chr11 5388333 5388370 -145395183 + AT_rich Low_complexity Low_complexity 1 37 0 267 326 71 14 chr11 5389185 5389326 -145394227 + MIR3 SINE MIR 7 155 -53 253 272 229 68 chr11 5390439 5390582 -145392971 - MLT1K LTR MaLR 0 588 469 1740 149 83 0 chr11 5390582 5390858 -145392695 + AluSx SINE Alu 1 299 -13 253 272 229 68 chr11 5390858 5391037 -145392516 - MLT1K LTR MaLR -119 469 214 2318 60 53 27 chr11 5391037 5391336 -145392217 - AluY SINE Alu -4 307 1 1476 191 67 0 chr11 5391831 5392098 -145391455 + AluJb SINE Alu 1 285 -27 2470 262 67 72 chr11 5392132 5393074 -145390479 + L1M4c LINE L1 818 1763 -4619 2070 137 3 0 chr11 5393074 5393374 -145390179 - AluSx SINE Alu -3 309 9 2470 262 67 72 chr11 5393374 5395065 -145388488 + L1M4c LINE L1 1763 3544 -2838 1544 251 33 17 chr11 5395107 5395566 -145387987 + L1M3e LINE L1 1 466 -6564 241 104 292 0 chr11 5395584 5395632 -145387921 + L1M4 LINE L1 4914 4975 -1171 * 969 195 37 18 chr11 5395631 5395903 -145387650 + L1MA8 LINE L1 5858 6134 -157 1443 79 0 0 chr11 5395903 5396081 -145387472 - AluY SINE Alu -15 296 119 590 180 0 0 chr11 5396088 5396188 -145387365 - MER45A DNA AcHobo -16 162 63 376 312 134 18 chr11 5396257 5396533 -145387020 - LTR16C LTR ERVL -25 466 159 219 154 0 0 chr11 5396533 5396572 -145386981 + T-rich Low_complexity Low_complexity 1 39 0 4751 15 2 0 chr11 5396573 5397114 -145386439 - L1PA2 LINE L1 -3 6152 5611 8777 27 3 0 chr11 5397114 5398435 -145385118 + L1PA2 LINE L1 4280 5604 -551 758 62 0 174 chr11 5398436 5398597 -145384956 - AluSq/x SINE Alu -180 133 1 328 336 19 0 chr11 5398597 5398704 -145384849 + L1M4c LINE L1 3771 3879 -2503 332 355 123 0 chr11 5401467 5401605 -145381948 + L2 LINE L2 2909 3063 -250 4043 68 20 31 chr11 5402090 5402669 -145380884 - PABL_A LTR ERV1 0 660 87 2219 108 0 0 chr11 5402669 5402965 -145380588 - AluSg SINE Alu -14 296 1 4043 68 20 31 chr11 5402965 5402991 -145380562 - PABL_A LTR ERV1 -573 87 62 1215 133 12 0 chr11 5402993 5403166 -145380387 + AluSq SINE Alu 4 178 -135 5062 110 207 102 chr11 5403630 5405037 -145378516 + pTR5 LTR ERV1 741 2295 -143 2333 54 48 0 chr11 5406459 5406574 -145376979 + AluY SINE Alu 1 109 -202 288 0 0 0 chr11 5406574 5406606 -145376947 + (TAAAA)n Simple_repeat Simple_repeat 4 35 0 2333 54 48 0 chr11 5406606 5406785 -145376768 + AluY SINE Alu 109 309 -2 327 310 85 99 chr11 5407431 5407552 -145376001 + L2 LINE L2 1626 1747 -1567 1477 156 35 44 chr11 5407552 5407891 -145375662 - L1MA7 LINE L1 0 6291 5956 327 310 85 99 chr11 5407891 5408620 -145374933 + L2 LINE L2 1747 2464 -850 323 325 62 58 chr11 5409110 5409402 -145374151 + L2 LINE L2 3016 3308 -5 514 147 68 0 chr11 5411453 5411583 -145371970 + L1MB1 LINE L1 6008 6161 -28 183 139 0 0 chr11 5413427 5413463 -145370090 + (CA)n Simple_repeat Simple_repeat 1 36 0 492 317 87 48 chr11 5413733 5414216 -145369337 + LTR33 LTR ERVL 16 517 -4 1963 152 0 41 chr11 5414909 5415225 -145368328 + AluJo SINE Alu 1 303 -9 22 0 0 0 chr11 5415305 5415327 -145368226 + AT_rich Low_complexity Low_complexity 1 22 0 1031 329 24 12 chr11 5415361 5415787 -145367766 + LTR16B LTR ERVL 34 464 0 1613 167 9 43 chr11 5416169 5416492 -145367061 + AluJb SINE Alu 1 312 0 1321 309 51 21 chr11 5416921 5417533 -145366020 + HERV16 LTR ERVL 947 1576 -3420 10072 225 23 53 chr11 5417597 5420277 -145363276 + L1P5 LINE L1 1973 4424 -2435 2184 118 0 25 chr11 5420277 5420591 -145362962 + AluSx SINE Alu 1 306 -6 10072 225 23 53 chr11 5420591 5422596 -145360957 + L1P5 LINE L1 4424 6488 -371 870 145 15 0 chr11 5422596 5422727 -145360826 + AluSq/x SINE Alu 1 133 -179 189 0 0 0 chr11 5422727 5422748 -145360805 + (A)n Simple_repeat Simple_repeat 1 21 0 23 0 0 0 chr11 5422943 5422966 -145360587 + AT_rich Low_complexity Low_complexity 1 23 0 375 257 0 0 chr11 5423175 5423288 -145360265 + L1P5 LINE L1 5668 5780 -376 574 214 5 102 chr11 5423293 5423499 -145360054 + AluJb SINE Alu 1 186 -126 350 242 0 40 chr11 5423549 5423676 -145359877 + FLAM_A SINE Alu 25 147 0 827 176 53 88 chr11 5423679 5423941 -145359612 + L1MA8 LINE L1 6035 6287 -4 22 0 0 0 chr11 5424169 5424191 -145359362 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr11 5424737 5424760 -145358793 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr11 5424901 5424925 -145358628 + AT_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chr11 5425021 5425046 -145358507 + AT_rich Low_complexity Low_complexity 1 25 0 207 0 0 0 chr11 5426097 5426120 -145357433 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 21 0 0 0 chr11 5427596 5427617 -145355936 + AT_rich Low_complexity Low_complexity 1 21 0 549 89 13 0 chr11 5427835 5427914 -145355639 + MADE1 DNA Mariner 1 80 0 21 36 0 0 chr11 5427924 5427952 -145355601 + AT_rich Low_complexity Low_complexity 1 28 0 186 167 0 0 chr11 5427968 5428004 -145355549 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 224 349 82 41 chr11 5428438 5428584 -145354969 + L2 LINE L2 2962 3113 -159 853 270 89 32 chr11 5429029 5429659 -145353894 - L1ME3A LINE L1 -58 6112 5451 1154 99 22 63 chr11 5429953 5430048 -145353505 - L1MA3 LINE L1 0 6305 6208 2153 118 17 0 chr11 5430048 5430336 -145353217 + AluSx SINE Alu 1 293 -19 1154 99 22 63 chr11 5430336 5430462 -145353091 - L1MA3 LINE L1 -97 6208 6093 320 232 19 39 chr11 5433168 5433306 -145350247 + (TAA)n Simple_repeat Simple_repeat 3 139 -15 1736 184 0 0 chr11 5433306 5433610 -145349943 + AluSx SINE Alu 9 312 0 320 232 19 39 chr11 5433610 5433626 -145349927 + (TAA)n Simple_repeat Simple_repeat 139 154 0 2812 19 0 0 chr11 5433829 5434139 -145349414 + AluYb8 SINE Alu 1 310 -8 771 284 23 31 chr11 5434675 5434932 -145348621 - MLT2D LTR ERVL 0 414 160 1726 159 0 45 chr11 5435191 5435500 -145348053 - AluJb SINE Alu -9 303 9 26 0 0 0 chr11 5435926 5435952 -145347601 + AT_rich Low_complexity Low_complexity 1 26 0 2903 157 14 6 chr11 5436778 5437287 -145346266 - LTR10D LTR ERV1 0 513 1 1911 180 91 28 chr11 5437738 5438199 -145345354 - LTR2B LTR ERV1 0 490 1 207 0 0 0 chr11 5438617 5438640 -145344913 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 703 146 0 90 chr11 5439268 5439412 -145344141 + FLAM_C SINE Alu 1 131 -2 1984 119 10 35 chr11 5439481 5439791 -145343762 - AluSx SINE Alu -10 302 1 21 36 0 0 chr11 5439794 5439822 -145343731 + AT_rich Low_complexity Low_complexity 1 28 0 2305 50 16 10 chr11 5440041 5440344 -145343209 + AluY SINE Alu 1 305 -6 1698 191 91 14 chr11 5440370 5440790 -145342763 - MLT1C LTR MaLR 0 467 16 530 331 134 9 chr11 5441612 5441956 -145341597 - L2 LINE L2 -1 3312 2926 389 229 131 56 chr11 5442018 5442323 -145341230 + L1MB7 LINE L1 5850 6177 -1 256 409 0 0 chr11 5442337 5442430 -145341123 - L2 LINE L2 -319 2994 2902 2210 95 0 7 chr11 5444296 5444607 -145338946 - AluSc SINE Alu 0 309 1 1813 255 35 52 chr11 5445405 5445847 -145337706 - L1MB7 LINE L1 -104 6080 5653 2947 6 0 0 chr11 5445847 5446165 -145337388 + AluYb8 SINE Alu 1 318 0 1813 255 35 52 chr11 5446165 5446432 -145337121 - L1MB7 LINE L1 -531 5653 5383 1288 221 20 57 chr11 5446476 5446712 -145336841 - L1MB7 LINE L1 -1741 4405 4189 1719 157 40 13 chr11 5446712 5447012 -145336541 - AluSx SINE Alu -4 308 1 1288 221 20 57 chr11 5447012 5447178 -145336375 - L1MB7 LINE L1 -1957 4189 4018 270 0 0 0 chr11 5447182 5447212 -145336341 + (T)n Simple_repeat Simple_repeat 1 30 0 1563 112 65 4 chr11 5447243 5447475 -145336078 - AluSx SINE Alu -14 298 53 1747 225 27 9 chr11 5447478 5447923 -145335630 - L1MB7 LINE L1 -2156 3990 3538 479 296 27 0 chr11 5447988 5448174 -145335379 - L1MB7 LINE L1 -3317 2829 2639 346 235 10 29 chr11 5448224 5448326 -145335227 - MLT1D LTR MaLR -8 497 398 760 190 95 28 chr11 5448327 5448506 -145335047 + MLT1C LTR MaLR 276 466 -1 379 157 26 85 chr11 5448508 5448661 -145334892 - L1MCa LINE L1 -4030 2185 2042 189 153 76 7 chr11 5448731 5448875 -145334678 + (TA)n Simple_repeat Simple_repeat 1 154 0 22 48 0 48 chr11 5448892 5448954 -145334599 + AT_rich Low_complexity Low_complexity 1 59 0 284 202 31 23 chr11 5448970 5449099 -145334454 + (TA)n Simple_repeat Simple_repeat 1 130 0 825 207 103 16 chr11 5449103 5449447 -145334106 - L1MCa LINE L1 -4199 2016 1706 229 220 20 90 chr11 5449548 5449648 -145333905 - L1M4 LINE L1 -1858 4288 4196 2775 120 21 14 chr11 5449661 5449981 -145333572 - L1PA16 LINE L1 -12 6154 5829 2422 84 0 0 chr11 5449981 5450289 -145333264 - AluY SINE Alu -1 310 3 2775 120 21 14 chr11 5450289 5450400 -145333153 - L1PA16 LINE L1 -337 5829 5720 2485 112 8 3 chr11 5450400 5450784 -145332769 + L1P4 LINE L1 5292 5677 -489 729 252 14 28 chr11 5450818 5451100 -145332453 - L1M4 LINE L1 -1948 4198 3921 * 780 235 63 48 chr11 5451086 5451418 -145332135 - L1M4 LINE L1 -847 5299 4963 226 362 60 60 chr11 5451587 5451888 -145331665 + MLT1K LTR MaLR 4 304 -284 602 192 57 6 chr11 5452990 5453167 -145330386 - MER53 DNA DNA -3 186 1 2078 119 0 7 chr11 5454134 5454450 -145329103 + AluSx SINE Alu 1 314 0 21 57 0 0 chr11 5454453 5454488 -145329065 + AT_rich Low_complexity Low_complexity 1 35 0 1356 109 0 0 chr11 5455324 5455507 -145328046 - AluSp SINE Alu -11 302 120 1328 226 147 22 chr11 5456384 5456799 -145326754 - MLT1C LTR MaLR 0 467 1 21 0 0 0 chr11 5456869 5456890 -145326663 + AT_rich Low_complexity Low_complexity 1 21 0 246 355 23 17 chr11 5457052 5457224 -145326329 + MIR SINE MIR 40 212 -50 25 0 0 0 chr11 5457231 5457256 -145326297 + AT_rich Low_complexity Low_complexity 1 25 0 1455 194 126 55 chr11 5457643 5458065 -145325488 - MLT2B1 LTR ERVL 0 520 69 361 214 90 0 chr11 5458082 5458171 -145325382 - MLT2B1 LTR ERVL -416 99 3 214 205 26 0 chr11 5458278 5458356 -145325197 + (TA)n Simple_repeat Simple_repeat 2 81 0 2132 86 0 83 chr11 5458415 5458741 -145324812 - AluSq SINE Alu -14 299 1 1068 255 28 61 chr11 5459507 5460049 -145323504 - MLT1E1 LTR MaLR 0 593 23 3616 35 0 0 chr11 5460726 5461187 -145322366 - L1P LINE L1 -2802 3344 2884 * 10161 42 1 0 chr11 5461186 5462431 -145321122 + L1P LINE L1 3335 4580 -1566 3832 87 14 40 chr11 5462686 5463305 -145320248 - L1MA2 LINE L1 0 6304 5702 322 318 19 0 chr11 5463503 5463610 -145319943 + L1MC4 LINE L1 6608 6716 -1326 1440 254 42 26 chr11 5463751 5464181 -145319372 + L1MB5 LINE L1 5690 6126 -48 2829 104 42 82 chr11 5464192 5464768 -145318785 - L1MA1 LINE L1 0 6302 5750 786 50 0 20 chr11 5464770 5464871 -145318682 + L1MA1 LINE L1 5651 5749 -553 261 186 0 14 chr11 5464871 5464941 -145318612 + L1MB3 LINE L1 6115 6183 0 459 324 7 0 chr11 5465066 5465205 -145318348 - Charlie1 DNA MER1_type -2621 140 1 2328 107 0 3 chr11 5465633 5465941 -145317612 - AluSq SINE Alu -6 307 1 236 210 16 0 chr11 5466858 5466920 -145316633 + (TGAA)n Simple_repeat Simple_repeat 3 65 0 1156 155 117 29 chr11 5467246 5467485 -145316068 - L1MA4 LINE L1 -388 5912 5653 2062 159 26 5 chr11 5467486 5467875 -145315678 + L1MA4 LINE L1 5899 6295 -5 236 372 53 21 chr11 5469383 5469571 -145313982 - MIR SINE MIR -13 249 56 282 287 70 17 chr11 5469740 5469855 -145313698 + MIR SINE MIR 53 173 -89 953 202 33 24 chr11 5471002 5471333 -145312220 + L1MA9 LINE L1 3125 3458 -2688 * 1161 166 5 0 chr11 5471308 5471519 -145312034 + L1MA9 LINE L1 4803 5014 -1132 27 0 0 0 chr11 5472797 5472824 -145310729 + AT_rich Low_complexity Low_complexity 1 27 0 2019 118 14 0 chr11 5475132 5475429 -145308124 + AluSx SINE Alu 1 301 -11 1699 199 37 20 chr11 5475624 5476026 -145307527 + L1MA9 LINE L1 5743 6151 -161 34 24 0 0 chr11 5476192 5476233 -145307320 + AT_rich Low_complexity Low_complexity 1 41 0 2070 89 40 6 chr11 5476237 5476562 -145306991 - L1MA1 LINE L1 0 6302 5967 1069 292 18 12 chr11 5477451 5477783 -145305770 + L1M4 LINE L1 361 694 -5848 1374 214 37 29 chr11 5477931 5478282 -145305271 + L1M4 LINE L1 4477 4830 -1814 1312 274 19 7 chr11 5478287 5478717 -145304836 + L1M4 LINE L1 4965 5399 -1245 264 108 0 0 chr11 5478729 5478766 -145304787 + L1MA7 LINE L1 6072 6108 -183 * 7392 258 18 6 chr11 5478751 5480850 -145302703 - L1 LINE L1 -1810 4336 2213 2785 206 186 12 chr11 5480849 5481739 -145301814 + L1 LINE L1 4307 5351 -795 * 661 44 2 1 chr11 5481839 5481929 -145301624 - L1MC/D LINE L1 -356 5799 5707 392 245 27 27 chr11 5482463 5482610 -145300943 - L1ME LINE L1 -381 5789 5643 23 0 0 0 chr11 5484629 5484652 -145298901 + AT_rich Low_complexity Low_complexity 1 23 0 1143 176 42 0 chr11 5485872 5486138 -145297415 - L1ME LINE L1 -743 5403 5164 1110 86 0 6 chr11 5486145 5486307 -145297246 + L1PA12 LINE L1 6008 6168 0 301 289 74 33 chr11 5486939 5487181 -145296372 - L1ME LINE L1 -1818 4328 4077 25 0 0 0 chr11 5487321 5487346 -145296207 + AT_rich Low_complexity Low_complexity 1 25 0 289 269 53 30 chr11 5487346 5487410 -145296143 + L1M4 LINE L1 4323 4384 -1762 5745 25 1 6 chr11 5487410 5488132 -145295421 + L1PA4 LINE L1 5463 6181 0 289 269 53 30 chr11 5488132 5488330 -145295223 + L1M4 LINE L1 4384 4592 -1554 310 356 56 0 chr11 5488422 5488582 -145294971 + L1M4 LINE L1 4698 4866 -1280 474 259 0 0 chr11 5488719 5488827 -145294726 + L1M2a LINE L1 8 115 -7053 3837 184 45 21 chr11 5488836 5489926 -145293627 + L1M2a LINE L1 1524 2655 -4513 382 378 22 6 chr11 5490000 5490180 -145293373 - L2 LINE L2 -2926 388 206 216 211 19 0 chr11 5492081 5492133 -145291420 + CT-rich Low_complexity Low_complexity 2 54 0 259 283 106 35 chr11 5492873 5493071 -145290482 - MIR SINE MIR 0 262 51 268 141 14 14 chr11 5494096 5494167 -145289386 + CT-rich Low_complexity Low_complexity 2 72 0 859 245 102 32 chr11 5494906 5495351 -145288202 - Charlie1b DNA MER1_type -44 479 6 3189 68 13 44 chr11 5497221 5497625 -145285928 + MLT2A1 LTR ERVL 1 391 -53 225 0 0 0 chr11 5497625 5497650 -145285903 + (CA)n Simple_repeat Simple_repeat 2 26 0 3189 68 13 44 chr11 5497650 5497703 -145285850 + MLT2A1 LTR ERVL 391 444 0 206 363 55 11 chr11 5498437 5498528 -145285025 - MIR3 SINE MIR -3 205 111 2874 149 114 5 chr11 5499269 5499840 -145283713 - LTR24C LTR ERV1 0 635 3 1125 240 10 13 chr11 5500291 5500578 -145282975 - L1P3 LINE L1 -561 5611 5322 260 260 39 13 chr11 5500743 5500820 -145282733 + Tigger5 DNA MER2_type 1 79 -2244 1409 67 0 10 chr11 5501150 5501344 -145282209 + L1M1 LINE L1 5625 5816 -486 371 180 0 0 chr11 5501344 5501405 -145282148 + Tigger5 DNA MER2_type 2262 2322 -1 27 49 0 0 chr11 5502832 5502873 -145280680 + AT_rich Low_complexity Low_complexity 1 41 0 1294 112 28 28 chr11 5502877 5502974 -145280579 - L1PA16 LINE L1 -9 6157 6061 1661 143 62 54 chr11 5502974 5503346 -145280207 + THE1C LTR MaLR 1 375 0 1294 112 28 28 chr11 5503346 5503462 -145280091 - L1PA16 LINE L1 -104 6062 5944 199 309 15 15 chr11 5503975 5504043 -145279510 - MIR SINE MIR -63 145 78 580 306 53 51 chr11 5505079 5505474 -145278079 + LTR16A1 LTR ERVL 62 457 0 932 211 22 0 chr11 5505625 5505810 -145277743 - MER5A DNA MER1_type 0 189 1 1001 246 0 5 chr11 5506170 5506385 -145277168 - MER58A DNA MER1_type 0 224 11 1871 151 47 0 chr11 5507199 5507497 -145276056 + AluSx SINE Alu 1 312 0 1895 81 0 67 chr11 5507574 5507857 -145275696 + AluY SINE Alu 36 299 -12 265 252 87 26 chr11 5508244 5508359 -145275194 + MIR SINE MIR 113 234 -28 4489 184 27 30 chr11 5508554 5509294 -145274259 - L1PA16 LINE L1 -16 6150 5409 1725 180 14 0 chr11 5509294 5509577 -145273976 - AluJb SINE Alu -25 287 1 4489 184 27 30 chr11 5509577 5510714 -145272839 - L1PA16 LINE L1 -757 5409 4285 25 0 0 0 chr11 5511623 5511648 -145271905 + AT_rich Low_complexity Low_complexity 1 25 0 252 0 0 0 chr11 5511794 5511822 -145271731 + (CA)n Simple_repeat Simple_repeat 2 29 0 3548 212 14 16 chr11 5513691 5514987 -145268566 + L1MB3 LINE L1 4498 5787 -396 322 173 12 25 chr11 5514989 5515070 -145268483 + (TATG)n Simple_repeat Simple_repeat 3 82 0 2078 162 15 8 chr11 5515074 5515469 -145268084 + L1MB3 LINE L1 5786 6183 0 1623 152 82 0 chr11 5515654 5515924 -145267629 - AluSg SINE Alu -18 292 1 406 293 75 40 chr11 5516815 5517337 -145266216 + L1ME4a LINE L1 5582 6121 0 300 164 119 0 chr11 5520497 5520564 -145262989 + L1PA15 LINE L1 6089 6163 -2 267 255 39 20 chr11 5520840 5520942 -145262611 - Charlie8 DNA MER1_type -2231 186 83 765 250 59 0 chr11 5521030 5521234 -145262319 + L1PA16 LINE L1 5951 6166 0 22 0 0 0 chr11 5521306 5521328 -145262225 + AT_rich Low_complexity Low_complexity 1 22 0 305 339 35 29 chr11 5521631 5521802 -145261751 + MIR SINE MIR 91 262 0 1849 171 3 7 chr11 5521912 5522216 -145261337 - AluSx SINE Alu -9 303 1 197 348 22 11 chr11 5522670 5522759 -145260794 - L2 LINE L2 -449 2865 2776 324 48 0 0 chr11 5523076 5523118 -145260435 + (CA)n Simple_repeat Simple_repeat 1 42 0 684 220 28 98 chr11 5523192 5523406 -145260147 - MIR SINE MIR -62 200 2 2277 91 109 0 chr11 5523560 5523900 -145259653 + MER51B LTR ERV1 1 377 0 26 0 0 0 chr11 5524205 5524231 -145259322 + AT_rich Low_complexity Low_complexity 1 26 0 1847 145 19 26 chr11 5524288 5524453 -145259100 + AluSx SINE Alu 1 166 -146 2263 142 28 14 chr11 5524453 5524812 -145258741 + THE1B LTR MaLR 1 364 0 11646 87 10 3 chr11 5524812 5526380 -145257173 + THE1B-int LTR MaLR 1 1580 0 2315 124 42 14 chr11 5526380 5526734 -145256819 + THE1B LTR MaLR 1 364 0 1847 145 19 26 chr11 5526734 5526876 -145256677 + AluSx SINE Alu 163 308 -4 200 400 0 0 chr11 5527018 5527098 -145256455 - L2 LINE L2 -246 3067 2988 2362 172 24 11 chr11 5527189 5527654 -145255899 - L1MA8 LINE L1 -347 5944 5474 209 192 39 0 chr11 5528195 5528247 -145255306 + A-rich Low_complexity Low_complexity 5 58 0 4840 31 0 3 chr11 5528635 5529213 -145254340 + L1PA4 LINE L1 5580 6155 0 412 75 0 0 chr11 5529214 5529267 -145254286 + L1PA10 LINE L1 5818 5870 -298 22 0 0 0 chr11 5529267 5529289 -145254264 + AT_rich Low_complexity Low_complexity 1 22 0 783 117 0 66 chr11 5529553 5529690 -145253863 - MER1B DNA MER1_type 0 339 212 3618 107 15 0 chr11 5529700 5530307 -145253246 - L1PBa LINE L1 -5015 1848 1085 3926 148 96 3 chr11 5530324 5531068 -145252485 - L1PBa LINE L1 -5739 1124 160 3726 191 19 0 chr11 5531068 5531823 -145251730 + L1MA7 LINE L1 5523 6291 0 1194 187 0 35 chr11 5531988 5532218 -145251335 - AluJb SINE Alu -12 300 79 267 404 40 27 chr11 5532256 5532540 -145251013 - L2 LINE L2 -285 2987 2702 507 232 63 7 chr11 5532827 5532969 -145250584 - L1MA10 LINE L1 -10 6324 6175 31 44 0 0 chr11 5532972 5533017 -145250536 + AT_rich Low_complexity Low_complexity 1 45 0 478 265 15 22 chr11 5533023 5533159 -145250394 + MLT1F1 LTR MaLR 1 135 -407 1312 285 9 6 chr11 5533159 5533482 -145250071 + L1M3c LINE L1 7 330 -5811 493 248 9 0 chr11 5533480 5533589 -145249964 - L1M3c LINE L1 -5695 446 337 * 1627 148 45 7 chr11 5533590 5533753 -145249800 + L1MA9 LINE L1 5987 6142 -170 180 77 0 0 chr11 5533753 5533779 -145249774 + (CA)n Simple_repeat Simple_repeat 2 27 0 1627 148 45 7 chr11 5533779 5533925 -145249628 + L1MA9 LINE L1 6142 6308 -4 786 287 31 11 chr11 5534097 5534358 -145249195 + MLT1F1 LTR MaLR 302 567 0 3488 38 2 29 chr11 5534520 5534973 -145248580 - L1PA6 LINE L1 -6 6148 5708 1403 69 0 0 chr11 5534973 5535148 -145248405 + L1PA6 LINE L1 5544 5718 -436 * 6348 199 9 4 chr11 5535132 5536412 -145247141 - L1PA15-16 LINE L1 -1586 5263 3977 3789 246 16 19 chr11 5536409 5537671 -145245882 - L1PA15-16 LINE L1 -3684 3165 1895 * 480 18 0 0 chr11 5537674 5537731 -145245822 + (TCTA)n Simple_repeat Simple_repeat 2 58 0 2220 153 42 83 chr11 5537821 5537917 -145245636 + L1MA4 LINE L1 5762 5860 -440 1895 122 46 20 chr11 5537917 5538221 -145245332 + AluSx SINE Alu 1 312 0 2220 153 42 83 chr11 5538221 5538678 -145244875 + L1MA4 LINE L1 5860 6292 -8 216 97 0 0 chr11 5539038 5539069 -145244484 + (CA)n Simple_repeat Simple_repeat 1 31 0 21 0 0 0 chr11 5539784 5539805 -145243748 + AT_rich Low_complexity Low_complexity 1 21 0 3171 90 0 0 chr11 5541439 5541871 -145241682 - L1PA7 LINE L1 0 6154 5723 325 55 68 0 chr11 5543114 5543187 -145240366 + (TA)n Simple_repeat Simple_repeat 2 79 0 23 0 0 0 chr11 5543193 5543216 -145240337 + AT_rich Low_complexity Low_complexity 1 23 0 324 133 36 0 chr11 5544592 5544675 -145238878 + CT-rich Low_complexity Low_complexity 2 87 0 801 357 65 15 chr11 5544873 5545349 -145238204 + L2 LINE L2 2814 3313 0 310 315 79 43 chr11 5545642 5545947 -145237606 + L1M4 LINE L1 2963 3278 -2868 2118 20 0 0 chr11 5545958 5546204 -145237349 - L1PA4 LINE L1 -5 6150 5905 242 237 151 0 chr11 5546512 5546605 -145236948 - MLT1E LTR MaLR -167 400 294 198 0 0 0 chr11 5546619 5546641 -145236912 + (T)n Simple_repeat Simple_repeat 1 22 0 231 94 0 0 chr11 5546724 5546756 -145236797 - L1P LINE L1 -746 5426 5395 2915 62 20 20 chr11 5546756 5547160 -145236393 + L1PA8 LINE L1 5769 6172 0 506 285 13 7 chr11 5547197 5547348 -145236205 - MLT1E LTR MaLR -439 154 3 471 274 85 33 chr11 5547349 5547619 -145235934 + L1ME3A LINE L1 5721 6004 -166 1017 241 133 22 chr11 5547651 5547975 -145235578 - MLT2B1 LTR ERVL -158 362 3 301 322 41 16 chr11 5547979 5548100 -145235453 + L1ME3A LINE L1 6043 6166 -4 218 175 48 0 chr11 5548395 5548458 -145235095 + (AATAG)n Simple_repeat Simple_repeat 4 69 0 5049 179 18 12 chr11 5549289 5551106 -145232447 - L1PB4 LINE L1 -8 6148 4315 21 36 0 0 chr11 5551111 5551139 -145232414 + AT_rich Low_complexity Low_complexity 1 28 0 2716 159 11 0 chr11 5551174 5551632 -145231921 - L1PA16 LINE L1 -105 6061 5599 * 3978 193 30 68 chr11 5551628 5553114 -145230439 + L1PA16 LINE L1 4186 5600 -566 2269 218 19 0 chr11 5553111 5553625 -145229928 - L1PB4 LINE L1 -1818 4328 3805 * 202 395 35 0 chr11 5555341 5555455 -145228098 + MIR SINE MIR 67 184 -78 189 0 0 0 chr11 5558175 5558196 -145225357 + (GA)n Simple_repeat Simple_repeat 2 22 0 2712 140 39 16 chr11 5559337 5559824 -145223729 + L1PA16 LINE L1 5660 6157 -9 278 54 0 0 chr11 5559826 5559863 -145223690 + L1MA6 LINE L1 6112 6148 -152 12353 33 0 0 chr11 5559873 5562111 -145221442 - L1PA4 LINE L1 -3 6152 3914 683 170 14 0 chr11 5562111 5562250 -145221303 + L1MA6 LINE L1 6154 6296 -4 3704 195 38 55 chr11 5562259 5562321 -145221232 + L1MB5 LINE L1 4900 4962 -1212 2129 122 3 3 chr11 5562321 5562615 -145220938 + AluSc SINE Alu 6 299 -10 3704 195 38 55 chr11 5562615 5563308 -145220245 + L1MB5 LINE L1 4962 5627 -547 2176 96 6 16 chr11 5563308 5563622 -145219931 + AluY SINE Alu 1 311 0 3704 195 38 55 chr11 5563622 5564145 -145219408 + L1MB5 LINE L1 5627 6157 -17 1322 237 95 94 chr11 5564669 5565214 -145218339 + MER77 LTR ERV1 54 599 -6 273 313 102 0 chr11 5565464 5565630 -145217923 - L1M4 LINE L1 -1307 4839 4657 421 321 57 24 chr11 5565734 5565943 -145217610 + MIR SINE MIR 47 262 0 182 219 16 0 chr11 5567352 5567416 -145216137 + (TA)n Simple_repeat Simple_repeat 2 66 0 243 139 25 13 chr11 5567939 5568018 -145215535 + C-rich Low_complexity Low_complexity 4 83 0 646 126 0 0 chr11 5568119 5568222 -145215331 - L1 LINE L1 -1565 4581 4479 520 265 36 14 chr11 5568256 5568479 -145215074 - L1M4 LINE L1 -1349 4797 4570 12106 148 45 10 chr11 5568479 5569193 -145214360 + Tigger1 DNA MER2_type 252 939 -1479 333 0 0 0 chr11 5569193 5569230 -145214323 + (TC)n Simple_repeat Simple_repeat 2 38 0 297 109 0 0 chr11 5569229 5569284 -145214269 + (TA)n Simple_repeat Simple_repeat 1 55 0 * 12106 148 45 10 chr11 5569230 5569284 -145214269 + Tigger1 DNA MER2_type 939 990 -1428 2014 129 3 3 chr11 5569284 5569570 -145213983 - AluSq SINE Alu -27 286 1 12106 148 45 10 chr11 5569570 5570947 -145212606 + Tigger1 DNA MER2_type 990 2418 0 218 326 123 36 chr11 5572455 5572593 -145210960 + L3 LINE CR1 1304 1453 -124 1068 108 30 0 chr11 5572610 5572776 -145210777 + L1PA13 LINE L1 5993 6163 0 398 397 39 0 chr11 5573246 5573503 -145210050 - L2 LINE L2 -339 2975 2709 351 0 0 0 chr11 5573832 5573871 -145209682 + (CA)n Simple_repeat Simple_repeat 2 40 0 186 43 0 0 chr11 5573870 5573893 -145209660 + (GA)n Simple_repeat Simple_repeat 2 24 0 * 210 143 0 0 chr11 5574037 5574072 -145209481 + (GAAA)n Simple_repeat Simple_repeat 4 38 0 444 182 26 0 chr11 5576774 5576851 -145206702 - MER2 DNA MER2_type 0 345 267 1125 173 20 10 chr11 5576877 5577079 -145206474 - MER2 DNA MER2_type -135 210 7 207 358 32 0 chr11 5577648 5577743 -145205810 - MIR SINE MIR -51 211 114 354 186 44 9 chr11 5578120 5578233 -145205320 + (CAGAGA)n Simple_repeat Simple_repeat 2 118 0 1306 228 140 33 chr11 5578907 5579409 -145204144 - LTR10B LTR ERV1 -3 544 1 5640 263 9 7 chr11 5579413 5580782 -145202771 - HERVI LTR ERV1 -2 7783 6412 1604 219 19 17 chr11 5581130 5581491 -145202062 - HERVI LTR ERV1 -3737 3159 2798 622 198 9 0 chr11 5581462 5581578 -145201975 - HERVI LTR ERV1 -2164 4485 4369 * 299 211 33 78 chr11 5581598 5581688 -145201865 - HERVI LTR ERV1 -2369 5416 5331 * 337 237 31 41 chr11 5581657 5581754 -145201799 - HERVI LTR ERV1 -2858 4927 4832 951 177 74 5 chr11 5581784 5582050 -145201503 - HERVI LTR ERV1 -3146 4639 4325 464 276 55 7 chr11 5582112 5582257 -145201296 - HERVI LTR ERV1 -3485 3164 3013 2594 197 50 68 chr11 5582840 5583916 -145199637 - HERVI LTR ERV1 -6786 999 3 947 194 172 95 chr11 5583938 5584443 -145199110 - LTR10B LTR ERV1 -3 544 1 817 102 8 0 chr11 5584567 5584685 -145198868 - L1P LINE L1 -3161 2985 2867 42 20 0 0 chr11 5585843 5585892 -145197661 + AT_rich Low_complexity Low_complexity 1 49 0 5880 221 94 44 chr11 5585936 5586765 -145196788 + L1MDa LINE L1 2937 3724 -3841 1780 88 0 24 chr11 5586765 5587014 -145196539 + L1PA8A LINE L1 5882 6124 -7 2495 62 0 3 chr11 5587015 5587319 -145196234 + AluY SINE Alu 1 303 -8 5880 221 94 44 chr11 5587319 5589225 -145194328 + L1MDa LINE L1 3723 5839 -1726 23 54 0 0 chr11 5590148 5590185 -145193368 + AT_rich Low_complexity Low_complexity 1 37 0 229 250 25 0 chr11 5591608 5591688 -145191865 + L1MC4 LINE L1 6620 6701 -1341 14080 182 46 11 chr11 5591702 5596117 -145187436 - L1PB1 LINE L1 0 6867 2611 204 67 0 0 chr11 5596117 5596147 -145187406 + (TTAG)n Simple_repeat Simple_repeat 3 32 0 1823 145 30 0 chr11 5596147 5596416 -145187137 - AluSx SINE Alu -35 277 1 14080 182 46 11 chr11 5596416 5598024 -145185529 - L1PB1 LINE L1 -4255 2612 620 825 169 14 0 chr11 5598004 5598152 -145185401 - L1PB1 LINE L1 -6663 200 51 * 477 225 50 6 chr11 5598259 5598441 -145185112 - L1M4 LINE L1 -2929 3217 3028 764 207 0 0 chr11 5598464 5598609 -145184944 - MSTD-int LTR MaLR -1589 146 2 1975 155 58 56 chr11 5598609 5599002 -145184551 - MSTD LTR MaLR -2 394 1 1154 44 0 0 chr11 5599547 5599684 -145183869 + L1PA3 LINE L1 6016 6152 -3 397 322 52 17 chr11 5600454 5600687 -145182866 - MIR SINE MIR -10 252 12 355 266 18 9 chr11 5600795 5600908 -145182645 - LTR67 LTR ERVL -4 553 440 31100 54 37 3 chr11 5601596 5605552 -145178001 + L1P LINE L1 13 4103 -2043 401 230 11 0 chr11 5605558 5605645 -145177908 + LTR26 LTR ERV1 516 603 0 684 314 14 35 chr11 5605667 5605954 -145177599 + L1ME LINE L1 188 468 -5602 606 94 24 0 chr11 5605957 5606042 -145177511 + L1P LINE L1 12 98 -6048 * 6745 66 2 19 chr11 5606036 5606924 -145176629 + L1P LINE L1 617 1489 -4657 10917 24 0 1 chr11 5606924 5608961 -145174592 + L1PA4 LINE L1 4114 6153 -2 1071 304 24 28 chr11 5608967 5609507 -145174046 + L1ME LINE L1 456 993 -5077 * 13786 162 75 26 chr11 5609496 5612058 -145171495 + L1M1 LINE L1 27 2713 -4852 5091 123 7 8 chr11 5612521 5613735 -145169818 + L1PA11 LINE L1 4745 5954 -220 1411 231 119 22 chr11 5614700 5615246 -145168307 - Zaphod DNA AcHobo -241 3790 3192 298 268 55 88 chr11 5616508 5616780 -145166773 + HERVFH21 LTR ERV1 1366 1628 -6629 937 283 57 56 chr11 5616966 5617993 -145165560 + HERVFH21 LTR ERV1 885 1923 -4731 2308 293 60 62 chr11 5618030 5620500 -145163053 + HERVFH21 LTR ERV1 1765 4940 -2348 335 126 27 35 chr11 5620949 5621022 -145162531 + HERVFH21 LTR ERV1 4614 4783 -1746 206 179 51 64 chr11 5621032 5621110 -145162443 + L2 LINE L2 2997 3073 -199 1042 80 7 7 chr11 5621142 5621279 -145162274 + AluSp SINE Alu 1 137 -176 9524 51 121 14 chr11 5621282 5622528 -145161025 + SVA Other Other 7 1386 0 702 285 63 59 chr11 5622529 5623054 -145160499 + HERVFH21 LTR ERV1 4686 5322 -1207 451 234 49 40 chr11 5624722 5624909 -145158644 + HERVFH21 LTR ERV1 4202 7147 -245 291 208 39 0 chr11 5625133 5625210 -145158343 + HERVFH21 LTR ERV1 6446 6525 -4 488 270 56 113 chr11 5627297 5627811 -145155742 - MLT1G LTR MaLR -42 548 64 1687 285 31 34 chr11 5627922 5628505 -145155048 + L1MEc LINE L1 39 619 -5777 577 227 78 17 chr11 5630883 5631062 -145152491 + L1P LINE L1 4254 4441 -1705 2266 99 0 29 chr11 5632571 5632884 -145150669 + AluSc SINE Alu 1 304 -5 293 97 16 97 chr11 5633174 5633236 -145150317 - U2 snRNA snRNA -131 57 1 203 167 0 21 chr11 5636095 5636143 -145147410 + CT-rich Low_complexity Low_complexity 2 48 0 202 200 0 0 chr11 5636687 5636727 -145146826 + (CA)n Simple_repeat Simple_repeat 1 40 0 1331 201 23 10 chr11 5637846 5638156 -145145397 - MER33 DNA MER1_type -22 302 1 183 100 0 0 chr11 5638852 5638882 -145144671 + (TTTTTA)n Simple_repeat Simple_repeat 3 32 0 206 206 44 0 chr11 5638891 5638959 -145144594 + (TTAA)n Simple_repeat Simple_repeat 1 71 0 * 215 187 53 41 chr11 5638923 5639094 -145144459 + (TATAA)n Simple_repeat Simple_repeat 1 173 0 505 94 9 113 chr11 5642627 5642733 -145140820 + LTR7 LTR ERV1 354 448 -2 14947 80 8 115 chr11 5642735 5645306 -145138247 + HERVH LTR ERV1 1 2297 -5416 1454 214 30 12 chr11 5645410 5645836 -145137717 - L1M4 LINE L1 -2976 3170 2737 195 370 30 15 chr11 5646857 5646992 -145136561 - L2 LINE L2 -13 3300 3164 26 0 0 0 chr11 5647729 5647755 -145135798 + AT_rich Low_complexity Low_complexity 1 26 0 305 26 0 0 chr11 5648797 5648836 -145134717 - L1PA16 LINE L1 -5 6161 6123 4621 154 11 4 chr11 5648960 5649772 -145133781 - L1PA16 LINE L1 -41 6125 5308 22 56 0 0 chr11 5650057 5650093 -145133460 + AT_rich Low_complexity Low_complexity 1 36 0 234 347 54 27 chr11 5650173 5650320 -145133233 - L2 LINE L2 0 3272 3122 693 341 42 59 chr11 5651052 5651641 -145131912 + L1MEc LINE L1 210 788 -5608 1877 156 3 6 chr11 5651649 5651977 -145131576 - MER50 LTR ERV1 -24 710 384 320 73 91 0 chr11 5652090 5652145 -145131408 + L1PA15 LINE L1 6106 6165 0 21 0 0 0 chr11 5652993 5653014 -145130539 + AT_rich Low_complexity Low_complexity 1 21 0 707 124 16 47 chr11 5653150 5653279 -145130274 + LTR8 LTR ERV1 567 691 0 7817 102 15 51 chr11 5653279 5654576 -145128977 + HUERS-P1 LTR ERV1 1 1250 -5013 189 94 0 0 chr11 5654589 5654621 -145128932 + (TC)n Simple_repeat Simple_repeat 1 32 0 8124 123 25 56 chr11 5654621 5656167 -145127386 + HUERS-P1 LTR ERV1 1217 2713 -3550 287 242 0 22 chr11 5656171 5656262 -145127291 - L1M4 LINE L1 -2467 3679 3591 21 71 0 0 chr11 5656351 5656393 -145127160 + AT_rich Low_complexity Low_complexity 1 42 0 1278 262 42 39 chr11 5656604 5657036 -145126517 - L1MEc LINE L1 -5928 468 36 2196 124 0 0 chr11 5657166 5657465 -145126088 + AluSp SINE Alu 1 299 -14 2004 128 59 0 chr11 5658557 5658846 -145124707 - AluSg SINE Alu -4 306 1 246 340 71 29 chr11 5659786 5660024 -145123529 - L2 LINE L2 -1035 2279 2032 2154 135 0 3 chr11 5660561 5660857 -145122696 - AluSx SINE Alu -17 295 1 1336 131 0 15 chr11 5661758 5661957 -145121596 - AluSq SINE Alu -117 196 1 281 333 16 24 chr11 5662067 5662190 -145121363 - L2 LINE L2 -2 3311 3190 240 416 34 0 chr11 5662280 5662369 -145121184 + L2 LINE L2 3149 3240 -32 303 350 42 8 chr11 5662492 5662612 -145120941 - L2 LINE L2 -2068 1246 1123 715 284 141 30 chr11 5662615 5663084 -145120469 + LTR33 LTR ERVL 1 521 0 808 228 25 30 chr11 5663301 5663503 -145120050 + MIR SINE MIR 41 241 -21 228 241 0 0 chr11 5663987 5664045 -145119508 + GA-rich Low_complexity Low_complexity 3 60 0 228 271 14 14 chr11 5664049 5664119 -145119434 + L1MEd LINE L1 460 529 -5590 211 273 131 10 chr11 5666614 5666713 -145116840 + L3b LINE CR1 1268 1378 -205 443 357 151 24 chr11 5666878 5667621 -145115932 + L2 LINE L2 1938 2774 -540 23 54 0 0 chr11 5668181 5668218 -145115335 + AT_rich Low_complexity Low_complexity 1 37 0 352 96 0 0 chr11 5668333 5668385 -145115168 - MADE1 DNA Mariner 0 80 29 5475 132 19 9 chr11 5669144 5670709 -145112844 - L1MA1 LINE L1 -127 6175 4589 2205 163 25 83 chr11 5671246 5671496 -145112057 - MER66B LTR ERV1 0 486 280 2144 128 0 7 chr11 5671496 5671800 -145111753 - AluSx SINE Alu -10 302 1 2205 163 25 83 chr11 5671800 5672065 -145111488 - MER66B LTR ERV1 -206 280 1 282 152 0 0 chr11 5672899 5672945 -145110608 + HERVK11 LTR ERVK 6722 6767 -1186 * 413 167 10 31 chr11 5672936 5673032 -145110521 + HERVK11 LTR ERVK 6963 7056 -897 * 2589 63 0 0 chr11 5672989 5673321 -145110232 - HERVK11 LTR ERVK -4731 3222 2891 * 2932 87 52 0 chr11 5673307 5673733 -145109820 - HERVK11 LTR ERVK -6341 1612 1165 2161 118 24 9 chr11 5673708 5674303 -145109250 - HERVK11 LTR ERVK -7081 872 206 * 2218 110 3 0 chr11 5674300 5674618 -145108935 - HERVK11 LTR ERVK -7634 319 1 5128 151 40 53 chr11 5674618 5675704 -145107849 - MER11C LTR ERVK 0 1071 1 1898 56 4 8 chr11 5675874 5676140 -145107413 + LTR7 LTR ERV1 1 265 -185 1870 111 15 19 chr11 5676538 5676800 -145106753 + AluSg SINE Alu 37 297 -13 22 56 0 0 chr11 5676998 5677034 -145106519 + AT_rich Low_complexity Low_complexity 1 36 0 230 328 86 9 chr11 5677504 5677620 -145105933 + MIR SINE MIR 57 181 -81 1612 219 19 32 chr11 5677995 5678365 -145105188 - MLT1A1 LTR MaLR 0 365 1 1632 199 43 10 chr11 5679614 5680012 -145103541 + L1MA9 LINE L1 5872 6282 -30 193 151 38 19 chr11 5680019 5680072 -145103481 + GA-rich Low_complexity Low_complexity 3 56 0 418 269 43 14 chr11 5680971 5681112 -145102441 + MIR SINE MIR 45 189 -73 194 352 67 9 chr11 5681119 5681224 -145102329 - L2 LINE L2 0 3272 3162 261 311 59 0 chr11 5681305 5681440 -145102113 - MIR SINE MIR -1 261 119 523 158 38 22 chr11 5681447 5681564 -145101989 + MLT1C LTR MaLR 1 106 -361 333 301 131 11 chr11 5682028 5682211 -145101342 - L1MDa LINE L1 -4711 1418 1214 289 263 123 78 chr11 5682220 5682722 -145100831 - L1MDa LINE L1 -4931 1188 664 1244 230 24 68 chr11 5682751 5683133 -145100420 + MLT1A1 LTR MaLR 1 365 0 246 136 0 0 chr11 5683249 5683293 -145100260 + (TG)n Simple_repeat Simple_repeat 1 44 0 344 106 30 15 chr11 5683407 5683473 -145100080 + Tigger3(Golem) DNA MER2_type 2432 2498 -531 198 103 0 0 chr11 5683628 5683657 -145099896 + (TA)n Simple_repeat Simple_repeat 2 30 0 4846 188 152 107 chr11 5684019 5685681 -145097872 - MER52A LTR ERV1 0 1755 19 1676 304 50 17 chr11 5686017 5686661 -145096892 + L1M2b LINE L1 1163 1827 -5382 1682 205 44 0 chr11 5686662 5687004 -145096549 + MSTA LTR MaLR 1 357 -71 544 355 12 0 chr11 5687004 5687249 -145096304 + MSTA-int LTR MaLR 8 255 -1396 3484 193 44 31 chr11 5687349 5688146 -145095407 + MLT1A1-int LTR MaLR 49 855 -796 3026 174 61 2 chr11 5688144 5688718 -145094835 + MLT1A1-int LTR MaLR 1044 1651 0 * 2389 157 36 2 chr11 5688718 5689131 -145094422 + MSTA LTR MaLR 1 427 -1 4534 165 10 40 chr11 5689134 5689734 -145093819 + L1M2 LINE L1 1478 2036 -4813 862 128 0 0 chr11 5689734 5689851 -145093702 + 5S rRNA rRNA 1 117 -4 4534 165 10 40 chr11 5689851 5690284 -145093269 + L1M2 LINE L1 2036 2480 -4369 701 100 10 0 chr11 5690284 5690384 -145093169 - MSTA LTR MaLR -319 109 9 6168 201 47 17 chr11 5690384 5692128 -145091425 + L1M2 LINE L1 2767 4565 -2283 1415 157 7 54 chr11 5692128 5692422 -145091131 - THE1B LTR MaLR 0 364 85 220 324 74 19 chr11 5692551 5692659 -145090894 + MIR SINE MIR 40 153 -109 426 255 242 32 chr11 5695176 5695556 -145087997 + LTR50 LTR ERVL 1 460 -335 241 296 61 41 chr11 5698511 5698609 -145084944 + L2 LINE L2 3169 3268 -4 21 0 0 0 chr11 5698623 5698644 -145084909 + AT_rich Low_complexity Low_complexity 1 21 0 753 333 40 50 chr11 5700553 5700956 -145082597 + LTR16A LTR ERVL 52 450 0 22 56 0 0 chr11 5701289 5701325 -145082228 + AT_rich Low_complexity Low_complexity 1 36 0 180 253 287 0 chr11 5701696 5701783 -145081770 - L2 LINE L2 -493 2821 2710 358 336 141 35 chr11 5701885 5702153 -145081400 - L2 LINE L2 -2503 811 490 180 111 0 0 chr11 5702153 5702180 -145081373 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 358 336 141 35 chr11 5702180 5702286 -145081267 - L2 LINE L2 -2824 490 397 198 252 34 101 chr11 5702308 5702427 -145081126 + MIR SINE MIR 136 246 -16 198 279 118 0 chr11 5702838 5702906 -145080647 - L2 LINE L2 0 3313 3238 32 26 0 0 chr11 5702951 5702990 -145080563 + AT_rich Low_complexity Low_complexity 1 39 0 193 282 59 24 chr11 5705276 5705361 -145078192 + MIR SINE MIR 17 104 -104 241 376 43 0 chr11 5705964 5706081 -145077472 - MIR3 SINE MIR -53 155 34 409 303 32 27 chr11 5706634 5706806 -145076747 + MIR SINE MIR 34 206 -56 3716 58 0 9 chr11 5707052 5707504 -145076049 - LTR7 LTR ERV1 -2 448 1 2449 92 48 13 chr11 5707504 5707883 -145075670 - HERVH LTR ERV1 0 7713 7322 1449 120 18 5 chr11 5707881 5708098 -145075455 - HERVH LTR ERV1 -1894 5819 5600 * 4312 153 1 1 chr11 5708099 5708761 -145074792 - HERVH LTR ERV1 -2564 5149 4488 2991 126 7 2 chr11 5708763 5709224 -145074329 - HERVH LTR ERV1 -3720 3993 3531 248 352 62 14 chr11 5709329 5709474 -145074079 + MIR SINE MIR 100 251 -11 5920 37 0 4 chr11 5712004 5712679 -145070874 - L1PA4 LINE L1 0 6155 5484 210 143 0 0 chr11 5716384 5716419 -145067134 + (CATATA)n Simple_repeat Simple_repeat 2 36 0 765 110 22 52 chr11 5716419 5716555 -145066998 - L1MA8 LINE L1 -507 5793 5662 2194 174 28 24 chr11 5716567 5717027 -145066526 + L1MA8 LINE L1 5825 6286 -5 640 252 53 27 chr11 5717238 5717424 -145066129 + MER33 DNA MER1_type 1 183 -93 576 179 62 0 chr11 5718823 5718968 -145064585 + MER33 DNA MER1_type 160 313 -11 266 329 174 18 chr11 5719228 5719447 -145064106 + L2 LINE L2 2595 2847 -467 715 369 47 8 chr11 5720081 5720444 -145063109 - LTR16A LTR ERVL -22 428 52 203 327 59 40 chr11 5722410 5722511 -145061042 - L2 LINE L2 -1 3271 3169 1003 142 7 13 chr11 5722861 5723016 -145060537 - L1PB3 LINE L1 -17 6137 5984 22 35 0 0 chr11 5723463 5723492 -145060061 + AT_rich Low_complexity Low_complexity 1 29 0 299 353 107 0 chr11 5723515 5723702 -145059851 - MIR SINE MIR -55 207 1 330 335 110 40 chr11 5724108 5724661 -145058892 - L2 LINE L2 -540 2774 2183 215 294 71 53 chr11 5725047 5725217 -145058336 + L2 LINE L2 1868 2040 -1274 301 370 95 23 chr11 5725838 5726354 -145057199 - L2 LINE L2 -1618 1696 1144 467 240 148 20 chr11 5729484 5729680 -145053873 + MLT1J LTR MaLR 283 503 -8 815 183 57 22 chr11 5730547 5730777 -145052776 + L1M4 LINE L1 2789 3026 -3120 2722 283 44 37 chr11 5730889 5731801 -145051752 + L1PA15 LINE L1 1 918 -5869 8100 247 34 13 chr11 5731809 5734844 -145048709 + L1PA15 LINE L1 1277 4396 -2401 7194 212 11 3 chr11 5735264 5737638 -145045915 + L1PA15 LINE L1 4431 6812 -4 567 233 39 22 chr11 5737641 5737873 -145045680 + L1M4 LINE L1 3140 3375 -2771 310 269 0 58 chr11 5737977 5738081 -145045472 + CT-rich Low_complexity Low_complexity 3 100 0 24 32 0 0 chr11 5738267 5738298 -145045255 + AT_rich Low_complexity Low_complexity 1 31 0 5996 30 1 1 chr11 5738312 5738975 -145044578 + L1PA4 LINE L1 5474 6136 -19 882 271 18 5 chr11 5739287 5739505 -145044048 - MIR SINE MIR -1 261 41 2252 108 0 0 chr11 5739797 5740092 -145043461 + AluSg SINE Alu 2 296 -14 830 268 91 40 chr11 5740092 5740488 -145043065 - LTR33 LTR ERVL -59 462 47 374 238 133 9 chr11 5740527 5740632 -145042921 + L2 LINE L2 1121 1238 -2076 261 348 52 9 chr11 5740739 5740854 -145042699 - L2 LINE L2 -4 3309 3190 26 0 0 0 chr11 5741022 5741048 -145042505 + AT_rich Low_complexity Low_complexity 1 26 0 493 108 15 0 chr11 5741308 5741373 -145042180 + AluJ/FLAM SINE Alu 2 67 -245 836 112 0 0 chr11 5741375 5741491 -145042062 + AluSq SINE Alu 102 217 -96 3022 143 9 2 chr11 5741591 5742053 -145041500 + MER75 DNA T2_type 14 478 -36 2017 126 23 0 chr11 5742565 5742866 -145040687 + AluSq SINE Alu 1 308 -5 242 344 80 16 chr11 5743488 5743613 -145039940 + L3 LINE CR1 1434 1566 -11 223 362 43 29 chr11 5743899 5744037 -145039516 - L2 LINE L2 -2667 647 508 4906 172 25 40 chr11 5744193 5745913 -145037640 - L1MA8 LINE L1 -17 7693 6006 9550 74 13 75 chr11 5745913 5747456 -145036097 + SVA Other Other 4 1386 -518 319 164 0 0 chr11 5747456 5747517 -145036036 - L1MA8 LINE L1 -1547 6018 5958 * 4828 200 36 15 chr11 5747513 5748211 -145035342 - L1MA8 LINE L1 -1923 5642 4905 2621 22 0 38 chr11 5748211 5748525 -145035028 - AluYb8 SINE Alu -7 311 10 4828 200 36 15 chr11 5748525 5749056 -145034497 - L1MA8 LINE L1 -2660 4905 4387 2564 234 16 61 chr11 5749052 5750130 -145033423 - L1MA8 LINE L1 -4594 2971 2008 * 1312 229 32 12 chr11 5750331 5750745 -145032808 - L1MA8 LINE L1 -6685 804 84 184 388 17 17 chr11 5751438 5751554 -145031999 - L2 LINE L2 -184 3088 2973 1845 158 0 34 chr11 5751785 5752108 -145031445 + AluJb SINE Alu 1 312 0 351 0 0 0 chr11 5752590 5752629 -145030924 + (CA)n Simple_repeat Simple_repeat 2 40 0 322 342 146 45 chr11 5755067 5755733 -145027820 + L2 LINE L2 2026 2758 -556 195 287 20 99 chr11 5755768 5755869 -145027684 + L2 LINE L2 3145 3237 -35 287 115 39 0 chr11 5755888 5755940 -145027613 + GA-rich Low_complexity Low_complexity 3 56 0 180 318 47 9 chr11 5755946 5756053 -145027500 + L2 LINE L2 2798 2908 -406 184 337 54 43 chr11 5756399 5756491 -145027062 - L2 LINE L2 -166 3106 3014 494 337 168 28 chr11 5756754 5757599 -145025954 - L2 LINE L2 -553 2761 1799 287 374 133 29 chr11 5758818 5759232 -145024321 + L3 LINE CR1 935 1391 -186 21 0 0 0 chr11 5759930 5759951 -145023602 + AT_rich Low_complexity Low_complexity 1 21 0 554 250 47 26 chr11 5760252 5760444 -145023109 + MLT1J LTR MaLR 316 511 0 293 369 108 0 chr11 5760680 5760894 -145022659 - L2 LINE L2 -654 2660 2424 339 340 46 92 chr11 5760924 5761230 -145022323 - L2 LINE L2 -2042 1272 981 5288 128 16 16 chr11 5761506 5762553 -145021000 + L1PA15 LINE L1 5119 6165 0 480 280 25 30 chr11 5762770 5762970 -145020583 - L1PA12 LINE L1 -5198 2383 2185 1318 313 19 30 chr11 5763427 5764021 -145019532 - L1PA12 LINE L1 -6200 1374 788 192 152 0 0 chr11 5764220 5764253 -145019300 + T-rich Low_complexity Low_complexity 1 33 0 1409 227 35 28 chr11 5764257 5765044 -145018509 + L1ME LINE L1 4866 5662 -504 6180 30 0 0 chr11 5765099 5765860 -145017693 - L1PA4 LINE L1 0 6155 5395 3442 25 0 9 chr11 5765859 5766308 -145017245 + L1PA4 LINE L1 4953 5397 -749 * 355 270 40 69 chr11 5766313 5766639 -145016914 - L1M4 LINE L1 -1037 5109 4797 8750 121 8 7 chr11 5766642 5767928 -145015625 + HSMAR1 DNA Mariner 1 1287 0 15841 179 19 9 chr11 5767929 5772181 -145011372 - L1PA14 LINE L1 -1 6160 1890 7508 137 4 2 chr11 5772368 5773667 -145009886 + L1P LINE L1 2786 4086 -2060 664 80 44 0 chr11 5773663 5773725 -145009828 + L1PA2 LINE L1 5319 5377 -797 * 17200 30 1 0 chr11 5773725 5775139 -145008414 + L1PA2 LINE L1 3305 4716 -1439 2825 7 0 0 chr11 5775139 5775446 -145008107 + AluYb8 SINE Alu 1 307 -11 17200 30 1 0 chr11 5775446 5776893 -145006660 + L1PA2 LINE L1 4716 6155 0 664 80 44 0 chr11 5776893 5776943 -145006610 + L1PA2 LINE L1 5377 5436 -738 290 342 0 9 chr11 5777251 5777362 -145006191 - ERVL LTR ERVL -664 5100 4991 366 324 106 32 chr11 5778190 5778625 -145004928 - L2 LINE L2 -1277 2037 1571 407 311 52 46 chr11 5779312 5779640 -145003913 + L1M4 LINE L1 4028 4357 -1789 329 326 0 0 chr11 5780051 5780140 -145003413 - L2 LINE L2 -16 3297 3209 5879 223 37 23 chr11 5780196 5784281 -144999272 + L1PBa LINE L1 3 3194 -3668 270 208 75 50 chr11 5784323 5784443 -144999110 + L1MA9 LINE L1 6150 6272 -40 432 55 0 0 chr11 5784460 5784515 -144999038 + (CA)n Simple_repeat Simple_repeat 2 56 0 742 314 147 0 chr11 5784529 5784848 -144998705 - LTR33 LTR ERVL -153 368 3 21 0 0 0 chr11 5786396 5786417 -144997136 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr11 5786528 5786552 -144997001 + AT_rich Low_complexity Low_complexity 1 24 0 33 0 0 0 chr11 5786673 5786706 -144996847 + AT_rich Low_complexity Low_complexity 1 33 0 2030 103 9 59 chr11 5786743 5787064 -144996489 + AluSc SINE Alu 1 305 -4 2048 138 13 3 chr11 5787151 5787449 -144996104 + AluJb SINE Alu 1 301 -11 742 89 45 0 chr11 5788823 5788935 -144994618 - L1PB1 LINE L1 -6 6145 6029 37 23 0 0 chr11 5789121 5789165 -144994388 + AT_rich Low_complexity Low_complexity 1 44 0 313 289 63 11 chr11 5789313 5789503 -144994050 + L1ME LINE L1 5556 5755 -366 4994 112 29 115 chr11 5789690 5789796 -144993757 + L1MA4 LINE L1 5211 5324 -976 2013 80 109 0 chr11 5789796 5790070 -144993483 + AluY SINE Alu 1 304 -7 4994 112 29 115 chr11 5790070 5790783 -144992770 + L1MA4 LINE L1 5324 5901 -399 1979 60 0 0 chr11 5790783 5791015 -144992538 + AluSx SINE Alu 1 232 -80 4994 112 29 115 chr11 5791015 5791384 -144992169 + L1MA4 LINE L1 5901 6300 0 207 0 0 0 chr11 5791542 5791565 -144991988 + (TA)n Simple_repeat Simple_repeat 1 23 0 31 44 0 0 chr11 5791724 5791769 -144991784 + AT_rich Low_complexity Low_complexity 1 45 0 184 205 0 0 chr11 5792144 5792183 -144991370 - L2 LINE L2 -981 2333 2295 1944 172 3 0 chr11 5792328 5792631 -144990922 - AluSx SINE Alu -8 304 1 360 292 77 0 chr11 5793912 5794107 -144989446 + L1ME LINE L1 5520 5729 -392 22 70 0 0 chr11 5794162 5794205 -144989348 + AT_rich Low_complexity Low_complexity 1 43 0 674 305 14 9 chr11 5794255 5794478 -144989075 - MIR SINE MIR -2 260 37 217 276 26 97 chr11 5794506 5794663 -144988890 + MIR SINE MIR 58 202 -60 180 294 119 55 chr11 5794802 5794911 -144988642 + L2 LINE L2 3175 3290 -23 228 285 106 80 chr11 5795428 5795579 -144987974 - MIR SINE MIR -71 191 37 243 88 0 0 chr11 5795645 5795679 -144987874 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 1472 265 94 39 chr11 5796465 5797047 -144986506 + MLT1G LTR MaLR 17 590 0 1404 218 152 47 chr11 5797242 5797709 -144985844 - LTR41 LTR ERVL -1 772 257 868 301 118 36 chr11 5797765 5798266 -144985287 + L1M4 LINE L1 8 549 -5993 1041 185 50 37 chr11 5798273 5798571 -144984982 + L1M4 LINE L1 1029 1330 -5212 425 215 50 0 chr11 5798582 5798703 -144984850 + L1M4 LINE L1 1624 1750 -4896 1190 229 26 61 chr11 5798712 5799216 -144984337 + L1M4 LINE L1 1706 2375 -4271 353 232 61 0 chr11 5799217 5799299 -144984254 - MER2 DNA MER2_type 0 345 259 685 230 66 7 chr11 5799306 5799573 -144983980 + L1M4 LINE L1 2542 2823 -3821 1356 214 18 25 chr11 5799609 5799885 -144983668 + Tigger7 DNA MER2_type 1 274 -2213 406 224 0 47 chr11 5799885 5799970 -144983583 + Tigger7 DNA MER2_type 2395 2475 -12 753 171 30 6 chr11 5799976 5800312 -144983241 + L1M4 LINE L1 2828 3272 -3372 9190 216 18 31 chr11 5800315 5803286 -144980267 + L1P3 LINE L1 2 3083 -3378 4051 13 0 0 chr11 5803389 5803837 -144979716 + L1PA2 LINE L1 5698 6145 -10 711 295 85 9 chr11 5804922 5805146 -144978407 + MIR SINE MIR 9 249 -13 466 308 157 19 chr11 5805165 5805477 -144978076 + L1ME3 LINE L1 5008 5362 -784 742 288 76 24 chr11 5805562 5805932 -144977621 + L1ME3 LINE L1 5477 5865 -299 1696 191 5 43 chr11 5806423 5806794 -144976759 - MLT1A2 LTR MaLR -4 370 14 619 247 82 0 chr11 5808845 5809003 -144974550 + MIR SINE MIR 12 182 -80 305 259 62 0 chr11 5809196 5809277 -144974276 + L2 LINE L2 3147 3232 -40 1736 163 3 7 chr11 5809589 5809883 -144973670 - AluJo SINE Alu -19 293 1 261 324 0 0 chr11 5810155 5810229 -144973324 - L2 LINE L2 -11 3302 3229 250 164 177 27 chr11 5811140 5811253 -144972300 - MIR3 SINE MIR -21 187 59 454 94 47 0 chr11 5814246 5814310 -144969243 + AluJ/FRAM SINE Alu 221 287 -25 312 287 58 0 chr11 5814316 5814403 -144969150 + L1ME LINE L1 5628 5719 -402 1064 224 89 20 chr11 5814773 5815076 -144968477 + MER46C DNA MER2_type 2 325 -13 357 213 0 0 chr11 5815628 5815703 -144967850 - L1PB4 LINE L1 0 6156 6082 212 247 136 25 chr11 5817886 5817967 -144965586 + L2 LINE L2 2969 3058 -214 290 244 0 24 chr11 5818060 5818142 -144965411 + MIR SINE MIR 183 262 0 203 133 0 0 chr11 5818558 5818588 -144964965 + (TG)n Simple_repeat Simple_repeat 2 31 0 2064 126 35 20 chr11 5818728 5819070 -144964483 + MER7A DNA MER2_type 1 345 -1 869 180 22 28 chr11 5819101 5819279 -144964274 - MER5B DNA MER1_type 0 178 2 479 237 93 61 chr11 5819991 5820211 -144963342 - MIR SINE MIR 0 262 38 356 184 0 26 chr11 5820694 5820770 -144962783 + L1PB4 LINE L1 6083 6156 0 673 152 159 14 chr11 5821241 5821379 -144962174 - MER4D LTR ERV1 -389 514 357 21 0 0 0 chr11 5821381 5821402 -144962151 + AT_rich Low_complexity Low_complexity 1 21 0 2242 84 3 0 chr11 5821404 5821701 -144961852 - AluSg SINE Alu -12 298 1 903 199 26 5 chr11 5821701 5821892 -144961661 - MER4B LTR ERV1 -415 195 1 1057 349 64 25 chr11 5822103 5822891 -144960662 - ERVL LTR ERVL -418 5346 4484 2268 91 13 0 chr11 5823330 5823639 -144959914 + AluSp SINE Alu 1 313 0 487 271 97 13 chr11 5823882 5824037 -144959516 + MIR SINE MIR 32 199 -63 184 294 87 22 chr11 5824428 5824520 -144959033 - L2 LINE L2 -32 3240 3143 881 64 0 0 chr11 5825077 5825186 -144958367 - AluSp SINE Alu -204 109 1 2711 165 64 11 chr11 5825186 5825811 -144957742 - L1 LINE L1 -2691 3455 2798 442 298 88 18 chr11 5826009 5826180 -144957373 - MIR SINE MIR -27 235 53 358 378 82 0 chr11 5826195 5826391 -144957162 + MIR SINE MIR 2 213 -49 787 181 11 80 chr11 5827143 5827331 -144956222 + MER69A DNA AcHobo 2 176 -1 338 208 0 52 chr11 5827397 5827474 -144956079 + MIR SINE MIR 74 146 -62 323 325 138 8 chr11 5830863 5831109 -144952444 + L2 LINE L2 1727 2004 -1310 769 154 147 13 chr11 5831467 5831623 -144951930 - MER4D LTR ERV1 -370 533 357 21 0 0 0 chr11 5831625 5831646 -144951907 + AT_rich Low_complexity Low_complexity 1 21 0 2270 81 3 0 chr11 5831648 5831945 -144951608 - AluSg SINE Alu -12 298 1 951 189 26 5 chr11 5831945 5832136 -144951417 - MER4B LTR ERV1 -415 195 1 1057 349 64 25 chr11 5832347 5833135 -144950418 - ERVL LTR ERVL -418 5346 4484 2268 91 13 0 chr11 5833574 5833883 -144949670 + AluSp SINE Alu 1 313 0 487 271 97 13 chr11 5834126 5834281 -144949272 + MIR SINE MIR 32 199 -63 184 294 87 22 chr11 5834672 5834764 -144948789 - L2 LINE L2 -32 3240 3143 710 358 47 42 chr11 5835335 5835627 -144947926 + L2 LINE L2 909 1198 -2116 2472 61 0 0 chr11 5835627 5835938 -144947615 + AluY SINE Alu 1 311 0 710 358 47 42 chr11 5835938 5836240 -144947313 + L2 LINE L2 1198 1506 -1808 478 202 11 21 chr11 5836234 5836328 -144947225 - MIR SINE MIR -107 155 63 * 2243 102 3 0 chr11 5836434 5836738 -144946815 - AluSx SINE Alu -7 305 1 1418 267 114 9 chr11 5836745 5837202 -144946351 - MLT1J LTR MaLR -6 505 1 499 279 162 36 chr11 5837295 5837603 -144945950 + L2 LINE L2 1700 2046 -1268 3035 104 4 40 chr11 5837608 5837865 -144945688 + MER57B LTR ERV1 1 237 -197 2292 62 0 3 chr11 5837865 5838154 -144945399 - AluY SINE Alu -9 302 15 3035 104 4 40 chr11 5838154 5838346 -144945207 + MER57B LTR ERV1 237 434 0 414 293 81 11 chr11 5838375 5838549 -144945004 - L1M4 LINE L1 -921 5225 5040 1834 172 0 6 chr11 5838557 5838871 -144944682 - AluSx SINE Alu 0 312 1 2172 90 3 3 chr11 5839104 5839403 -144944150 - AluSp SINE Alu -14 299 1 1747 152 0 34 chr11 5839414 5839737 -144943816 - AluJb SINE Alu 0 312 1 652 285 36 105 chr11 5839937 5840103 -144943450 + L2 LINE L2 2325 2501 -813 833 168 0 0 chr11 5840103 5840234 -144943319 - FLAM_A SINE Alu -2 131 1 652 285 36 105 chr11 5840234 5840513 -144943040 + L2 LINE L2 2501 2739 -575 * 1097 217 134 97 chr11 5840512 5840774 -144942779 - L2 LINE L2 0 3313 3062 2057 110 0 3 chr11 5840774 5841065 -144942488 + AluSg1 SINE Alu 1 290 -19 1097 217 134 97 chr11 5841065 5841318 -144942235 - L2 LINE L2 -251 3062 2780 415 256 105 47 chr11 5841405 5841596 -144941957 + L2 LINE L2 2888 3089 -224 693 225 41 6 chr11 5841603 5841772 -144941781 - LTR33A LTR ERVL -10 513 339 2660 86 106 5 chr11 5841774 5842181 -144941372 - LTR7 LTR ERV1 -2 448 1 2440 81 65 14 chr11 5842181 5842552 -144941001 - HERVH LTR ERV1 0 7713 7324 1517 127 0 0 chr11 5842552 5842772 -144940781 - HERVH LTR ERV1 -1894 5819 5600 3014 132 5 2 chr11 5842773 5843384 -144940169 - HERVH LTR ERV1 -2564 5149 4489 * 5713 105 19 5 chr11 5843379 5844228 -144939325 - HERVH LTR ERV1 -3713 4000 3140 * 15035 110 10 22 chr11 5844207 5846989 -144936564 - HERVH LTR ERV1 -4718 2995 1 2777 72 99 5 chr11 5846999 5847402 -144936151 - LTR7 LTR ERV1 -9 441 1 276 256 171 82 chr11 5847425 5847694 -144935859 - LTR33A LTR ERVL -218 305 13 221 208 14 0 chr11 5847756 5847828 -144935725 + (CTATT)n Simple_repeat Simple_repeat 1 73 0 488 267 128 26 chr11 5847828 5848023 -144935530 + L2 LINE L2 3099 3313 0 277 310 28 0 chr11 5848042 5848113 -144935440 + L2 LINE L2 3199 3271 -42 1242 217 137 35 chr11 5848121 5848545 -144935008 - MLT1C LTR MaLR 0 467 1 277 273 75 127 chr11 5848580 5849017 -144934536 + L2 LINE L2 2628 3052 -220 568 167 80 60 chr11 5851136 5851258 -144932295 - MER5C DNA MER1_type 0 324 197 2267 103 0 0 chr11 5851258 5851569 -144931984 + AluSq SINE Alu 1 311 -2 568 167 80 60 chr11 5851569 5851596 -144931957 - MER5C DNA MER1_type -127 197 172 1591 153 11 0 chr11 5851604 5851866 -144931687 - L1MD3 LINE L1 -5 7990 7726 747 206 39 7 chr11 5851868 5852023 -144931530 - MER5C DNA MER1_type -164 160 1 267 31 0 0 chr11 5852340 5852372 -144931181 + (T)n Simple_repeat Simple_repeat 1 32 0 616 191 0 9 chr11 5852372 5852482 -144931071 - MER50-int LTR ERV1 -7093 112 4 1494 123 0 60 chr11 5852484 5852575 -144930978 - MER50 LTR ERV1 0 734 639 2234 116 0 0 chr11 5852575 5852886 -144930667 + AluSp SINE Alu 1 311 -2 1494 123 0 60 chr11 5852886 5853045 -144930508 - MER50 LTR ERV1 -95 639 499 241 267 84 30 chr11 5853313 5853444 -144930109 + MIR SINE MIR 105 242 -20 412 333 33 0 chr11 5853739 5853859 -144929694 + L2 LINE L2 3147 3270 -2 344 309 112 81 chr11 5853954 5854045 -144929508 + L1M4 LINE L1 4800 4887 -1259 1389 161 50 47 chr11 5854045 5854343 -144929210 + AluJo SINE Alu 1 299 -13 344 309 112 81 chr11 5854343 5854362 -144929191 + L1M4 LINE L1 4887 4904 -1242 2148 102 0 3 chr11 5854362 5854655 -144928898 - AluSq SINE Alu -21 292 1 344 309 112 81 chr11 5854655 5854963 -144928590 + L1M4 LINE L1 4904 5232 -914 250 325 100 0 chr11 5856476 5856556 -144926997 + L2 LINE L2 3226 3313 0 2067 114 0 25 chr11 5857000 5857315 -144926238 - AluSx SINE Alu -5 307 1 324 77 46 0 chr11 5857408 5857473 -144926080 + (TA)n Simple_repeat Simple_repeat 1 68 0 1919 96 0 4 chr11 5857473 5857733 -144925820 - AluSg1 SINE Alu -19 290 32 283 320 13 0 chr11 5857736 5857811 -144925742 + L2 LINE L2 3225 3300 -13 322 38 19 19 chr11 5857816 5857869 -144925684 + (TGAA)n Simple_repeat Simple_repeat 2 54 0 26 30 0 0 chr11 5860008 5860041 -144923512 + AT_rich Low_complexity Low_complexity 1 33 0 230 362 127 32 chr11 5860322 5860692 -144922861 - L2 LINE L2 -443 2871 2467 486 245 29 36 chr11 5860721 5860860 -144922693 - MIR SINE MIR -49 213 76 360 311 0 66 chr11 5861238 5861389 -144922164 + L2 LINE L2 2933 3073 -199 232 167 0 69 chr11 5861578 5861650 -144921903 + L1ME LINE L1 5759 5818 -303 326 260 39 0 chr11 5861689 5861766 -144921787 + ERVL LTR ERVL 3654 3733 -2031 672 215 45 40 chr11 5861965 5862142 -144921411 - AluJo SINE Alu -16 296 119 810 354 13 10 chr11 5862364 5862760 -144920793 + ERVL LTR ERVL 4063 4459 -1195 1108 228 154 23 chr11 5862782 5863211 -144920342 - MLT1H LTR MaLR 0 555 35 1648 85 0 13 chr11 5863229 5863464 -144920089 - AluY SINE Alu -14 297 66 1001 83 0 0 chr11 5863464 5863596 -144919957 - AluY SINE Alu -179 132 1 1637 223 72 31 chr11 5863714 5864158 -144919395 + MLT1C LTR MaLR 6 467 0 205 26 26 51 chr11 5864455 5864494 -144919059 + (CAAAAA)n Simple_repeat Simple_repeat 3 40 0 2368 137 49 91 chr11 5864645 5864981 -144918572 - L1MA8 LINE L1 -4 6287 5981 2586 36 0 0 chr11 5864981 5865289 -144918264 - AluY SINE Alu -3 308 1 2368 137 49 91 chr11 5865289 5865501 -144918052 - L1MA8 LINE L1 -310 5981 5762 2060 109 20 0 chr11 5866227 5866521 -144917032 - AluSx SINE Alu -10 302 3 1756 174 119 31 chr11 5866857 5867276 -144916277 - LTR2B LTR ERV1 -3 487 32 225 196 0 0 chr11 5867890 5867941 -144915612 + GA-rich Low_complexity Low_complexity 1 51 0 311 185 370 0 chr11 5868535 5868616 -144914937 - MER81 DNA DNA -3 111 1 2340 63 3 0 chr11 5868916 5869215 -144914338 - AluY SINE Alu -11 300 1 380 172 46 0 chr11 5869435 5869522 -144914031 - L1MC5 LINE L1 -66 7895 7805 2154 100 10 0 chr11 5869687 5869986 -144913567 - AluSx SINE Alu -10 302 1 2304 95 0 0 chr11 5870271 5870575 -144912978 + AluSq SINE Alu 1 304 -9 965 158 6 6 chr11 5871065 5871236 -144912317 - MER39 LTR ERV1 0 707 537 204 40 0 0 chr11 5871237 5871262 -144912291 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 835 177 20 0 chr11 5871264 5871411 -144912142 - FRAM SINE Alu -30 146 1 2110 133 76 129 chr11 5871412 5871654 -144911899 - MER39B LTR ERV1 -154 499 246 1807 164 0 16 chr11 5871654 5871971 -144911582 - AluJo SINE Alu 0 312 1 2110 133 76 129 chr11 5871971 5872103 -144911450 - MER39B LTR ERV1 -407 246 109 2077 116 10 0 chr11 5872103 5872406 -144911147 - AluSx SINE Alu -6 306 1 2110 133 76 129 chr11 5872406 5872430 -144911123 - MER39B LTR ERV1 -544 109 85 2213 92 3 13 chr11 5872430 5872744 -144910809 - AluSx SINE Alu -1 311 1 2110 133 76 129 chr11 5872744 5872870 -144910683 - MER39B LTR ERV1 -568 85 1 825 127 0 0 chr11 5873060 5873178 -144910375 + FLAM_C SINE Alu 7 124 -19 227 161 18 0 chr11 5873178 5873234 -144910319 + (TA)n Simple_repeat Simple_repeat 1 57 0 1865 173 31 45 chr11 5873455 5874081 -144909472 + LTR8 LTR ERV1 1 691 0 316 331 25 32 chr11 5875385 5875542 -144908011 + ERVL LTR ERVL 5140 5295 -469 2209 98 3 0 chr11 5875548 5875845 -144907708 + AluSx SINE Alu 1 298 -14 1252 190 66 22 chr11 5875895 5876169 -144907384 + AluJb SINE Alu 15 300 -12 657 25 0 0 chr11 5876268 5876347 -144907206 + (TCTA)n Simple_repeat Simple_repeat 2 80 0 2629 86 13 5 chr11 5876774 5877148 -144906405 + L1PA13 LINE L1 5785 6161 -2 911 151 6 38 chr11 5877469 5877628 -144905925 + MER3 DNA MER1_type 56 209 0 1886 146 3 0 chr11 5877904 5878192 -144905361 + AluJb SINE Alu 1 289 -23 267 79 0 0 chr11 5878192 5878230 -144905323 + (CCAA)n Simple_repeat Simple_repeat 2 39 0 233 234 0 96 chr11 5878593 5878687 -144904866 - MIR SINE MIR -130 132 48 25 0 0 0 chr11 5878792 5878817 -144904736 + AT_rich Low_complexity Low_complexity 1 25 0 624 198 87 12 chr11 5879293 5879465 -144904088 - MER53 DNA DNA 0 189 5 200 254 18 18 chr11 5879640 5879695 -144903858 + MIR SINE MIR 95 149 -113 214 296 28 56 chr11 5879708 5879816 -144903737 + MIR SINE MIR 48 152 -110 765 242 43 0 chr11 5879954 5880140 -144903413 + MIR SINE MIR 35 228 -34 180 125 0 0 chr11 5880215 5880247 -144903306 + (T)n Simple_repeat Simple_repeat 1 32 0 423 141 28 0 chr11 5880285 5880356 -144903197 - AluJ/FRAM SINE Alu -16 296 224 2983 222 15 15 chr11 5880536 5881188 -144902365 + MER82 DNA MER2_type 2 653 0 2118 125 3 0 chr11 5881487 5881798 -144901755 - AluSx SINE Alu 0 312 1 1281 157 126 28 chr11 5882013 5882090 -144901463 + Charlie5 DNA MER1_type 2234 2302 -322 2841 133 9 0 chr11 5882090 5882520 -144901033 + MER57B LTR ERV1 1 434 0 1281 157 126 28 chr11 5882520 5882798 -144900755 + Charlie5 DNA MER1_type 2302 2624 0 210 143 0 0 chr11 5883262 5883297 -144900256 + (TTTTC)n Simple_repeat Simple_repeat 5 39 0 197 143 48 0 chr11 5883325 5883367 -144900186 + CT-rich Low_complexity Low_complexity 3 46 0 1350 251 92 14 chr11 5885051 5885473 -144898080 - MLT1C LTR MaLR 0 467 13 1156 219 109 27 chr11 5885473 5885839 -144897714 + MSTD LTR MaLR 1 396 0 253 333 9 9 chr11 5886437 5886545 -144897008 - ERVL LTR ERVL -2405 3359 3252 1644 177 100 84 chr11 5887566 5887634 -144895919 - MLT1C LTR MaLR -2 465 400 1936 130 0 17 chr11 5887634 5887926 -144895627 + AluSq SINE Alu 2 288 -25 1644 177 100 84 chr11 5887926 5888308 -144895245 - MLT1C LTR MaLR -67 400 8 2129 114 3 0 chr11 5888390 5888687 -144894866 - AluSp SINE Alu -15 298 1 1361 210 105 18 chr11 5888736 5889069 -144894484 + MER93b LTR ERV1 12 373 0 2028 177 36 120 chr11 5889385 5890053 -144893500 + LTR9 LTR ERV1 1 612 0 2215 95 0 0 chr11 5890083 5890378 -144893175 + AluSg SINE Alu 2 296 -14 2033 119 0 3 chr11 5891473 5891783 -144891770 - AluSx SINE Alu -3 309 1 195 69 0 0 chr11 5894530 5894559 -144888994 + (TTG)n Simple_repeat Simple_repeat 3 31 0 307 154 39 0 chr11 5894844 5894896 -144888657 - L2 LINE L2 -5 3308 3255 513 309 24 63 chr11 5895138 5895390 -144888163 + L2 LINE L2 2716 2957 -357 273 300 70 20 chr11 5895457 5895557 -144887996 + L2 LINE L2 3183 3287 -26 1775 186 0 0 chr11 5895611 5895922 -144887631 + AluJb SINE Alu 1 311 -1 192 333 42 0 chr11 5895986 5896058 -144887495 - L2 LINE L2 -6 3266 3192 346 277 84 0 chr11 5896268 5896387 -144887166 + MIR SINE MIR 119 247 -15 337 218 40 198 chr11 5896410 5896482 -144887071 - L2 LINE L2 -1 3312 3230 1657 167 30 10 chr11 5896482 5896782 -144886771 + AluSx SINE Alu 2 307 -5 337 218 40 198 chr11 5896782 5897012 -144886541 - L2 LINE L2 -83 3230 3058 1743 185 7 17 chr11 5897858 5898160 -144885393 + AluJo SINE Alu 1 299 -13 1030 193 117 58 chr11 5899711 5899830 -144883723 + MLT1A1 LTR MaLR 1 112 -253 2452 120 30 79 chr11 5899830 5900118 -144883435 - MER65A LTR ERV1 0 445 187 2366 73 7 0 chr11 5900118 5900404 -144883149 - AluSp SINE Alu -25 288 1 2452 120 30 79 chr11 5900404 5900583 -144882970 - MER65A LTR ERV1 -258 187 1 1030 193 117 58 chr11 5900583 5900805 -144882748 + MLT1A1 LTR MaLR 112 362 -3 2022 141 17 7 chr11 5901079 5901376 -144882177 - AluSx SINE Alu -12 300 1 21 0 0 0 chr11 5902432 5902453 -144881100 + AT_rich Low_complexity Low_complexity 1 21 0 4312 92 17 73 chr11 5902715 5903477 -144880076 + L1PB1 LINE L1 5433 6151 0 2198 103 3 20 chr11 5904060 5904361 -144879192 + AluSq SINE Alu 9 304 -9 436 221 176 33 chr11 5904492 5904799 -144878754 + L1ME4a LINE L1 5767 6117 -4 246 81 0 0 chr11 5905089 5905126 -144878427 + (GA)n Simple_repeat Simple_repeat 2 38 0 238 282 0 13 chr11 5905926 5906004 -144877549 + L2 LINE L2 3144 3220 -93 32 0 0 0 chr11 5907254 5907286 -144876267 + AT_rich Low_complexity Low_complexity 1 32 0 1838 191 30 22 chr11 5907297 5907659 -144875894 - MLT1A1 LTR MaLR 0 365 1 40417 38 26 2 chr11 5908030 5913282 -144870271 - L1P LINE L1 -764 5382 5 31 76 0 0 chr11 5913413 5913479 -144870074 + AT_rich Low_complexity Low_complexity 1 66 0 186 255 78 0 chr11 5913491 5913542 -144870011 - L2 LINE L2 -1 3312 3258 1777 191 55 0 chr11 5913610 5913940 -144869613 - MER7A DNA MER2_type 0 346 1 2613 187 64 40 chr11 5913960 5914359 -144869194 - L1MD1 LINE L1 -9 6627 6239 2232 101 7 3 chr11 5914359 5914657 -144868896 - AluSq SINE Alu -14 299 1 2613 187 64 40 chr11 5914657 5914890 -144868663 - L1MD1 LINE L1 -397 6239 5974 1873 160 54 11 chr11 5914890 5915240 -144868313 + MLT1A1 LTR MaLR 1 365 0 2613 187 64 40 chr11 5915240 5915289 -144868264 - L1MD1 LINE L1 -662 5974 5928 * 3651 233 83 14 chr11 5915288 5916619 -144866934 - L1MD1 LINE L1 -1962 4578 3157 7449 36 0 1 chr11 5916672 5918193 -144865360 - L1PA5 LINE L1 -4 6150 4632 9024 88 19 1 chr11 5918193 5919481 -144864072 - L1P LINE L1 -4825 1321 11 1020 217 38 9 chr11 5919537 5920079 -144863474 - L1MD1 LINE L1 -3597 2943 2391 1805 141 7 10 chr11 5920079 5920383 -144863170 - MER1B DNA MER1_type 0 339 37 547 265 196 3 chr11 5920387 5920693 -144862860 - L1MD1 LINE L1 -4142 2398 2034 1422 219 39 8 chr11 5920701 5921134 -144862419 - L1ME2 LINE L1 -76 6086 5628 3843 173 18 31 chr11 5921281 5922098 -144861455 - L1MB3 LINE L1 -2 6181 5375 665 242 0 18 chr11 5922312 5922477 -144861076 + MIR SINE MIR 101 262 0 236 265 0 0 chr11 5923393 5923442 -144860111 - L2 LINE L2 -14 3258 3210 234 167 0 0 chr11 5923525 5923585 -144859968 + T-rich Low_complexity Low_complexity 1 60 0 1564 147 38 12 chr11 5923809 5924128 -144859425 + L1MA8 LINE L1 5961 6287 -4 186 43 0 0 chr11 5925326 5925349 -144858204 + (ATG)n Simple_repeat Simple_repeat 2 24 0 197 260 91 0 chr11 5925369 5925446 -144858107 - MIR SINE MIR -42 220 137 198 0 0 0 chr11 5925446 5925468 -144858085 + (T)n Simple_repeat Simple_repeat 1 22 0 40 0 0 0 chr11 5925478 5925518 -144858035 + AT_rich Low_complexity Low_complexity 1 40 0 749 169 0 0 chr11 5925518 5925672 -144857881 - L1HS LINE L1 -2 6153 6000 30 27 0 0 chr11 5926660 5926697 -144856856 + AT_rich Low_complexity Low_complexity 1 37 0 2268 118 0 0 chr11 5927682 5927986 -144855567 + AluSx SINE Alu 1 304 -8 2291 90 3 6 chr11 5929985 5930296 -144853257 - AluSx SINE Alu -2 310 1 1489 195 84 15 chr11 5931109 5931503 -144852050 - LTR37A LTR ERV1 -2 424 4 742 223 48 65 chr11 5931503 5931795 -144851758 - MER31-int LTR ERV1 -677 4259 3973 713 151 0 0 chr11 5931814 5931920 -144851633 - AluSq/x SINE Alu -207 106 1 573 230 24 24 chr11 5931920 5932085 -144851468 - MER31-int LTR ERV1 -955 3981 3817 466 88 38 0 chr11 5932746 5932826 -144850727 + GA-rich Low_complexity Low_complexity 2 84 0 379 152 152 0 chr11 5934479 5934591 -144848962 - LTR37A LTR ERV1 -285 141 13 225 132 0 0 chr11 5934946 5934984 -144848569 + (CAAAG)n Simple_repeat Simple_repeat 2 39 0 2574 30 0 0 chr11 5935170 5935467 -144848086 + AluY SINE Alu 1 297 -14 2242 125 0 10 chr11 5935825 5936138 -144847415 + AluSx SINE Alu 1 310 -2 223 244 0 0 chr11 5936823 5936868 -144846685 + C-rich Low_complexity Low_complexity 2 46 0 1592 194 115 3 chr11 5937177 5937533 -144846020 - MSTD LTR MaLR 0 396 1 2102 137 3 0 chr11 5937771 5938063 -144845490 - AluSx SINE Alu -1 311 19 2093 118 3 7 chr11 5938556 5938852 -144844701 - AluSc SINE Alu -14 295 1 388 246 205 0 chr11 5939131 5939253 -144844300 - MER5A DNA MER1_type 0 189 43 428 184 10 0 chr11 5940138 5940241 -144843312 + (TA)n Simple_repeat Simple_repeat 1 104 0 539 301 114 0 chr11 5940343 5940519 -144843034 - MIR SINE MIR -36 226 31 246 288 157 60 chr11 5940661 5940980 -144842573 - L2 LINE L2 -46 3267 2918 587 124 0 10 chr11 5940980 5941077 -144842476 + MER4A LTR ERV1 2 97 -567 310 297 0 0 chr11 5941989 5942068 -144841485 + MER5A DNA MER1_type 29 107 -71 395 272 64 0 chr11 5942088 5942213 -144841340 - L1MEc LINE L1 -4901 1495 1363 4267 75 0 4 chr11 5942215 5942771 -144840782 - MER41A LTR ERV1 0 554 1 11623 100 24 28 chr11 5942773 5945724 -144837829 - MER41A-int LTR ERV1 -4 5942 1360 306 0 0 0 chr11 5945724 5945758 -144837795 + (CA)n Simple_repeat Simple_repeat 1 34 0 4618 124 74 9 chr11 5945761 5946805 -144836748 - MER41A-int LTR ERV1 -4852 1481 1 3560 84 67 8 chr11 5946805 5947328 -144836225 - MER41A LTR ERV1 0 554 1 575 241 112 42 chr11 5947349 5947602 -144835951 - MLT1E LTR MaLR -248 319 54 339 265 47 71 chr11 5947752 5947922 -144835631 - L1MEc LINE L1 -5952 253 88 412 283 8 17 chr11 5947964 5948084 -144835469 - L2 LINE L2 -609 2705 2587 2447 77 6 6 chr11 5948414 5948727 -144834826 + AluSq SINE Alu 1 313 0 189 0 0 0 chr11 5949458 5949479 -144834074 + (T)n Simple_repeat Simple_repeat 1 21 0 189 94 0 0 chr11 5949494 5949526 -144834027 + (T)n Simple_repeat Simple_repeat 1 32 0 1320 6 0 0 chr11 5949528 5949684 -144833869 - L1HS LINE L1 0 6155 6000 504 239 35 0 chr11 5949687 5949800 -144833753 - MIR SINE MIR -114 148 32 337 293 93 7 chr11 5950444 5950584 -144832969 - L1MC4 LINE L1 -1278 6764 6613 1813 143 3 18 chr11 5950589 5950875 -144832678 - AluJo SINE Alu -30 282 1 210 330 0 11 chr11 5953354 5953442 -144830111 + CT-rich Low_complexity Low_complexity 3 89 0 21 0 0 0 chr11 5953594 5953615 -144829938 + AT_rich Low_complexity Low_complexity 1 21 0 307 291 45 18 chr11 5953899 5954009 -144829544 + L2 LINE L2 3168 3280 -33 281 377 15 0 chr11 5954387 5954517 -144829036 + L2 LINE L2 2188 2319 -995 439 343 32 32 chr11 5954687 5954903 -144828650 + MIR SINE MIR 19 234 -28 24 0 0 0 chr11 5955577 5955601 -144827952 + AT_rich Low_complexity Low_complexity 1 24 0 14205 155 37 18 chr11 5955601 5955646 -144827907 - L1MA2 LINE L1 -109 7614 7571 1965 147 7 3 chr11 5955646 5955946 -144827607 - AluSx SINE Alu -11 301 1 14205 155 37 18 chr11 5955946 5960092 -144823461 - L1MA2 LINE L1 -152 7571 3322 2151 116 0 3 chr11 5960092 5960412 -144823141 + AluSx SINE Alu 1 319 0 14205 155 37 18 chr11 5960412 5960644 -144822909 - L1MA2 LINE L1 -4401 3322 3096 501 163 10 10 chr11 5960646 5960744 -144822809 + MER4A LTR ERV1 1 98 -566 1612 160 36 14 chr11 5960744 5961081 -144822472 + MER4A LTR ERV1 261 663 -1 1258 128 68 16 chr11 5961090 5961339 -144822214 - L1MA2 LINE L1 -4476 3089 2828 4193 70 3 26 chr11 5961339 5961906 -144821647 + MER41A LTR ERV1 1 554 0 277 104 338 13 chr11 5961990 5962067 -144821486 + MER41A-int LTR ERV1 1 102 -5844 4754 136 53 30 chr11 5962076 5963283 -144820270 + MER41A-int LTR ERV1 1 1319 -4627 1932 175 59 10 chr11 5963282 5963670 -144819883 + MER41A-int LTR ERV1 1965 2371 -5166 * 714 111 133 7 chr11 5963669 5963804 -144819749 + MER57-int LTR ERV1 1866 2017 -3929 * 648 146 43 107 chr11 5963800 5963916 -144819637 + MER57-int LTR ERV1 1740 1862 -5319 * 2171 115 0 13 chr11 5963916 5964220 -144819333 + AluSx SINE Alu 1 300 -12 648 146 43 107 chr11 5964220 5964299 -144819254 + MER57-int LTR ERV1 1862 3490 -3691 9354 161 117 17 chr11 5964328 5966110 -144817443 - L1MA2 LINE L1 -5593 1972 13 615 290 60 10 chr11 5966110 5966310 -144817243 - MIR SINE MIR -3 259 50 281 317 110 0 chr11 5966412 5966494 -144817059 + L2 LINE L2 3146 3236 -36 38 66 0 28 chr11 5967336 5967442 -144816111 + AT_rich Low_complexity Low_complexity 1 103 0 808 194 37 42 chr11 5967474 5967690 -144815863 + MER96B DNA MER1_type? 202 416 -1 2050 129 4 0 chr11 5967944 5968270 -144815283 + AluSx SINE Alu 3 329 0 259 319 48 18 chr11 5968381 5968547 -144815006 - L1ME LINE L1 -421 5700 5530 247 254 54 23 chr11 5968589 5968719 -144814834 - L1M3 LINE L1 -724 5447 5314 330 312 25 33 chr11 5968957 5969204 -144814349 - L1M3 LINE L1 -1107 5039 4793 232 313 167 30 chr11 5969210 5969408 -144814145 - MIR SINE MIR -3 259 35 280 335 68 58 chr11 5969610 5969903 -144813650 - L2 LINE L2 -484 2830 2535 429 328 83 23 chr11 5971118 5971363 -144812190 + MIR SINE MIR 8 262 0 1897 152 0 30 chr11 5971591 5971888 -144811665 + AluSx SINE Alu 11 298 -14 2276 119 3 0 chr11 5972001 5972311 -144811242 + AluSx SINE Alu 1 311 -1 544 269 7 13 chr11 5972547 5972696 -144810857 + L2 LINE L2 2200 2347 -967 291 306 162 20 chr11 5972742 5973039 -144810514 - MLT1J2 LTR MaLR -45 405 67 40466 35 24 1 chr11 5973196 5978993 -144804560 - L1PA3 LINE L1 -213 5942 13 371 273 87 17 chr11 5979427 5979635 -144803918 + MLT1I LTR MaLR 93 327 -123 1885 160 10 3 chr11 5980404 5980697 -144802856 + AluSx SINE Alu 1 295 -17 241 341 99 0 chr11 5981470 5981561 -144801992 + L2 LINE L2 3122 3221 -51 21 0 0 0 chr11 5981785 5981806 -144801747 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr11 5981895 5981919 -144801634 + AT_rich Low_complexity Low_complexity 1 24 0 385 254 64 0 chr11 5981925 5982035 -144801518 - L1M4 LINE L1 -2924 4641 4525 1191 235 76 13 chr11 5982059 5982589 -144800964 - L1M4 LINE L1 -3414 4151 3530 1102 132 0 0 chr11 5982589 5982748 -144800805 - AluSx SINE Alu -1 311 153 751 139 0 0 chr11 5982748 5982856 -144800697 - AluSx SINE Alu -204 108 1 24 0 0 0 chr11 5983140 5983164 -144800389 + AT_rich Low_complexity Low_complexity 1 24 0 1523 100 56 0 chr11 5983174 5983405 -144800148 - L1PA16 LINE L1 -8 6158 5915 1694 136 12 37 chr11 5983407 5983731 -144799822 - L1 LINE L1 -2307 3839 3524 * 7458 161 31 27 chr11 5983729 5985271 -144798282 - L1M4 LINE L1 -4662 2905 1358 2051 197 15 6 chr11 5985272 5986049 -144797504 - L1M2 LINE L1 -652 5660 4877 2583 66 0 41 chr11 5986152 5986516 -144797037 - L1PA6 LINE L1 -1 6153 5805 393 261 82 31 chr11 5986553 5986885 -144796668 + MER57-int LTR ERV1 2455 4202 -2129 4396 229 52 62 chr11 5986888 5988378 -144795175 + MER57-int LTR ERV1 2493 3965 -906 1648 214 0 14 chr11 5988378 5988673 -144794880 - AluJo SINE Alu -21 291 1 4396 229 52 62 chr11 5988673 5988881 -144794672 + MER57-int LTR ERV1 3965 4174 -697 1720 239 68 42 chr11 5988974 5989239 -144794314 + MER57-int LTR ERV1 6614 6871 -666 2327 138 23 0 chr11 5989239 5989593 -144793960 - THE1B LTR MaLR -2 362 1 1720 239 68 42 chr11 5989593 5989845 -144793708 + MER57-int LTR ERV1 6871 7144 -393 1247 151 13 6 chr11 5989846 5990268 -144793285 + LTR54 LTR ERV1 2 510 0 285 300 22 0 chr11 5990414 5990504 -144793049 + L2 LINE L2 1614 1705 -1609 879 71 58 0 chr11 5990692 5990847 -144792706 + CT-rich Low_complexity Low_complexity 2 165 0 1986 91 14 11 chr11 5990847 5991122 -144792431 - AluSq SINE Alu -36 277 2 1958 138 3 3 chr11 5991206 5991530 -144792023 - AluSx SINE Alu 0 312 1 2273 108 10 0 chr11 5992078 5992385 -144791168 - AluSx SINE Alu -2 310 1 799 238 72 25 chr11 5992712 5992944 -144790609 + MIR SINE MIR 2 231 -31 245 257 29 29 chr11 5992989 5993059 -144790494 - MIR SINE MIR -127 81 12 246 303 67 6 chr11 5994997 5995175 -144788378 - HAL1b LINE L1 -727 621 433 26 30 0 0 chr11 5996105 5996138 -144787415 + AT_rich Low_complexity Low_complexity 1 33 0 274 284 9 17 chr11 5996248 5996364 -144787189 - L1M4 LINE L1 -1541 4605 4491 2250 116 3 0 chr11 5996456 5996759 -144786794 - AluSx SINE Alu -8 304 1 774 192 12 12 chr11 5996887 5997059 -144786494 + AluSq SINE Alu 142 313 0 181 260 31 94 chr11 5997383 5997479 -144786074 - L3b LINE CR1 -113 1470 1381 207 0 0 0 chr11 5997517 5997540 -144786013 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 1782 164 0 0 chr11 5997551 5997813 -144785740 - AluSx SINE Alu -50 262 1 472 310 39 0 chr11 5997814 5997969 -144785584 + L2 LINE L2 2841 3001 -312 3641 48 119 8 chr11 5998021 5998523 -144785030 - LTR6B LTR ERV1 0 558 1 32 0 0 0 chr11 5998963 5998995 -144784558 + AT_rich Low_complexity Low_complexity 1 32 0 1897 128 0 0 chr11 5998995 5999277 -144784276 - AluSx SINE Alu -26 286 5 426 276 46 33 chr11 5999338 5999490 -144784063 + MIR SINE MIR 66 219 -43 1910 131 0 0 chr11 5999519 5999801 -144783752 + AluSx SINE Alu 20 301 -11 305 243 27 14 chr11 6000632 6000706 -144782847 + MIR SINE MIR 2 76 -186 12386 141 42 28 chr11 6000718 6001321 -144782232 - L1MA3 LINE L1 0 6305 5712 2318 84 7 0 chr11 6001321 6001631 -144781922 - AluSx SINE Alu 0 312 1 12386 141 42 28 chr11 6001631 6003865 -144779688 - L1MA3 LINE L1 -593 5712 3413 2308 102 0 0 chr11 6003865 6004178 -144779375 - AluSp SINE Alu 0 313 1 12386 141 42 28 chr11 6004178 6004803 -144778750 - L1MA3 LINE L1 -2892 3413 2798 442 298 88 18 chr11 6005001 6005172 -144778381 - MIR SINE MIR -27 235 53 358 378 82 0 chr11 6005187 6005383 -144778170 + MIR SINE MIR 2 213 -49 787 181 11 80 chr11 6006135 6006323 -144777230 + MER69A DNA AcHobo 2 176 -1 338 208 0 52 chr11 6006389 6006466 -144777087 + MIR SINE MIR 74 146 -62 323 325 138 8 chr11 6009855 6010101 -144773452 + L2 LINE L2 1727 2004 -1310 397 249 112 81 chr11 6010571 6010768 -144772785 - L2 LINE L2 0 3272 3070 5396 136 92 23 chr11 6011073 6011152 -144772401 + Tigger3b DNA MER2_type 1 73 -2955 1750 177 3 10 chr11 6011152 6011462 -144772091 + AluJo SINE Alu 1 308 -4 5396 136 92 23 chr11 6011462 6012378 -144771175 + Tigger3b DNA MER2_type 73 1065 -166 1269 340 75 41 chr11 6012488 6013384 -144770169 + L2 LINE L2 1773 2698 -616 345 47 0 0 chr11 6013658 6013701 -144769852 + (TG)n Simple_repeat Simple_repeat 2 44 0 32 0 0 0 chr11 6013701 6013733 -144769820 + AT_rich Low_complexity Low_complexity 1 32 0 505 263 89 93 chr11 6013783 6014030 -144769523 + L2 LINE L2 3027 3272 0 217 322 194 8 chr11 6014155 6014397 -144769156 + L2 LINE L2 2940 3226 -46 422 175 62 0 chr11 6014740 6014820 -144768733 + Tigger3b DNA MER2_type 1147 1231 0 251 264 27 55 chr11 6014907 6014998 -144768555 - MIR SINE MIR -109 99 16 2185 100 10 0 chr11 6015052 6015361 -144768192 - AluSp SINE Alu -1 312 1 496 342 25 20 chr11 6015393 6015592 -144767961 + L2 LINE L2 3069 3268 -4 1839 121 78 14 chr11 6016443 6016789 -144766764 + L1MC2 LINE L1 5977 6344 0 183 80 0 0 chr11 6016819 6016844 -144766709 + (TG)n Simple_repeat Simple_repeat 2 26 0 1748 165 7 7 chr11 6017797 6018094 -144765459 + AluJb SINE Alu 1 297 -15 237 278 24 32 chr11 6018948 6019074 -144764479 + C-rich Low_complexity Low_complexity 3 127 0 375 23 0 0 chr11 6019238 6019282 -144764271 + (GA)n Simple_repeat Simple_repeat 1 44 0 1849 284 2 2 chr11 6020866 6021285 -144762268 + LTR16A LTR ERVL 24 442 -8 311 374 168 3 chr11 6021289 6021599 -144761954 + L2 LINE L2 2482 2842 -472 288 154 0 0 chr11 6021686 6021738 -144761815 + T-rich Low_complexity Low_complexity 1 52 0 258 305 102 17 chr11 6021760 6021878 -144761675 + L2 LINE L2 2931 3058 -214 1497 214 123 106 chr11 6021886 6022526 -144761027 + MLT1E2 LTR MaLR 4 626 0 498 267 58 49 chr11 6022624 6022849 -144760704 - L2 LINE L2 -645 2669 2443 650 237 38 38 chr11 6022884 6023095 -144760458 - MIR SINE MIR -44 218 8 233 304 82 38 chr11 6023113 6023214 -144760339 + L2 LINE L2 1266 1361 -1953 267 54 0 0 chr11 6023214 6023251 -144760302 + (CA)n Simple_repeat Simple_repeat 2 38 0 233 304 82 38 chr11 6023251 6023333 -144760220 + L2 LINE L2 1361 1457 -1857 912 291 188 9 chr11 6023333 6023901 -144759652 - L2 LINE L2 -956 2358 1689 308 82 0 20 chr11 6023911 6023960 -144759593 + (TTTC)n Simple_repeat Simple_repeat 2 49 0 218 368 69 10 chr11 6023962 6024166 -144759387 - L2 LINE L2 -1637 1677 1462 669 294 117 35 chr11 6024167 6024562 -144758991 + MLT1J LTR MaLR 85 511 0 344 348 176 27 chr11 6024569 6024645 -144758908 - L2 LINE L2 -1855 1459 1396 207 69 0 0 chr11 6024645 6024674 -144758879 + (TG)n Simple_repeat Simple_repeat 1 29 0 344 348 176 27 chr11 6024674 6024933 -144758620 - L2 LINE L2 -1918 1396 1074 1135 162 65 148 chr11 6025011 6025363 -144758190 + MLT1B LTR MaLR 68 390 0 213 189 57 38 chr11 6025959 6026012 -144757541 - MER5A DNA MER1_type -78 111 58 2625 17 0 0 chr11 6027788 6028088 -144755465 - AluYa5 SINE Alu -11 300 1 463 250 159 6 chr11 6028879 6029055 -144754498 + MIR SINE MIR 47 249 -13 319 220 28 73 chr11 6029076 6029113 -144754440 + MIR SINE MIR 109 146 -116 188 86 29 0 chr11 6029113 6029148 -144754405 + (CAT)n Simple_repeat Simple_repeat 1 36 0 319 220 28 73 chr11 6029148 6029219 -144754334 + MIR SINE MIR 146 212 -50 4067 71 28 33 chr11 6029329 6029689 -144753864 - L1PB2 LINE L1 -5 6146 5789 2019 137 0 3 chr11 6029689 6030002 -144753551 - AluSx SINE Alu 0 312 1 4067 71 28 33 chr11 6030002 6030220 -144753333 - L1PB2 LINE L1 -362 5789 5571 1309 209 65 69 chr11 6030608 6031086 -144752467 + MLT1E2 LTR MaLR 105 606 -20 273 29 0 0 chr11 6031086 6031120 -144752433 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1309 209 65 69 chr11 6031120 6031141 -144752412 + MLT1E2 LTR MaLR 606 626 0 1138 193 0 5 chr11 6031311 6031513 -144752040 + AluJb SINE Alu 1 201 -111 2104 86 17 0 chr11 6031619 6031910 -144751643 - AluY SINE Alu -15 296 1 346 292 77 15 chr11 6032673 6032803 -144750750 - L2 LINE L2 -10 3303 3166 405 0 0 0 chr11 6034047 6034092 -144749461 + (TG)n Simple_repeat Simple_repeat 2 46 0 2287 158 70 2 chr11 6035087 6035487 -144748066 + MSTA LTR MaLR 2 428 0 284 383 101 15 chr11 6035531 6035857 -144747696 - L2 LINE L2 -337 2977 2624 599 296 40 6 chr11 6035877 6036053 -144747500 - MIR SINE MIR -6 256 75 814 233 33 6 chr11 6036416 6036596 -144746957 + MIR SINE MIR 78 262 0 213 351 13 0 chr11 6039911 6039988 -144743565 - L2 LINE L2 0 3272 3195 550 339 60 45 chr11 6040342 6040875 -144742678 - L2 LINE L2 -35 3237 2702 302 358 61 14 chr11 6041221 6041369 -144742184 + L2 LINE L2 2252 2406 -908 1564 209 126 26 chr11 6041485 6041915 -144741638 + MLT1G LTR MaLR 118 590 0 1106 188 27 5 chr11 6041915 6042138 -144741415 - L1ME3A LINE L1 -23 6147 5920 285 360 96 13 chr11 6042149 6042538 -144741015 + L2 LINE L2 2461 2966 -348 750 179 31 0 chr11 6042547 6042709 -144740844 - L1MD3 LINE L1 0 7995 7829 2481 65 0 0 chr11 6042709 6043019 -144740534 - AluSg SINE Alu 0 310 1 219 411 65 0 chr11 6043044 6043168 -144740385 + L2 LINE L2 2952 3083 -189 22 70 0 0 chr11 6043997 6044040 -144739513 + GC_rich Low_complexity Low_complexity 1 43 0 184 239 0 43 chr11 6044669 6044715 -144738838 - L2 LINE L2 -95 3218 3175 362 269 30 2 chr11 6045095 6045213 -144738340 - L1ME1 LINE L1 -44 6122 5992 24 0 0 0 chr11 6045858 6045882 -144737671 + AT_rich Low_complexity Low_complexity 1 24 0 194 231 292 11 chr11 6046068 6046160 -144737393 - MIR SINE MIR -61 147 30 244 274 0 0 chr11 6046617 6046668 -144736885 - L2 LINE L2 -15 3257 3207 258 255 74 47 chr11 6046680 6046829 -144736724 - L2 LINE L2 -1 3312 3160 1455 154 36 121 chr11 6046876 6047206 -144736347 + AluSx SINE Alu 1 302 0 338 335 182 36 chr11 6047215 6047935 -144735618 + L2 LINE L2 2210 3035 -237 507 261 60 22 chr11 6049377 6049511 -144734042 - MIR SINE MIR -123 139 1 584 217 43 14 chr11 6049593 6049731 -144733822 - LTR33 LTR ERVL -4 517 376 2328 98 3 10 chr11 6050317 6050613 -144732940 - AluSp SINE Alu -19 294 1 665 348 65 19 chr11 6050729 6051206 -144732347 + L2 LINE L2 1931 2429 -885 694 249 105 5 chr11 6051297 6051506 -144732047 + MIR SINE MIR 32 261 -1 197 374 119 35 chr11 6051958 6052335 -144731218 + L2 LINE L2 2824 3232 -40 207 100 0 0 chr11 6053020 6053050 -144730503 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 901 259 250 26 chr11 6053059 6053927 -144729626 - L2 LINE L2 0 3313 2245 24 32 0 0 chr11 6055386 6055417 -144728136 + AT_rich Low_complexity Low_complexity 1 31 0 885 286 186 12 chr11 6056720 6057185 -144726368 - L2 LINE L2 -2 3311 2770 251 323 66 61 chr11 6057530 6057719 -144725834 + MER5A DNA MER1_type 1 189 0 795 265 111 59 chr11 6058181 6058657 -144724896 - MLT1E2 LTR MaLR 0 626 5 227 263 0 38 chr11 6060890 6060970 -144722583 + G-rich Low_complexity Low_complexity 6 82 0 554 249 159 5 chr11 6063331 6063520 -144720033 - MIR SINE MIR -17 245 28 259 293 13 0 chr11 6064538 6064613 -144718940 - L2 LINE L2 -228 3044 2969 261 0 0 0 chr11 6064615 6064644 -144718909 + (T)n Simple_repeat Simple_repeat 1 29 0 270 388 50 16 chr11 6065057 6065178 -144718375 - L2 LINE L2 -5 3267 3143 224 280 105 21 chr11 6069352 6069495 -144714058 - L2 LINE L2 -463 2851 2697 198 0 0 0 chr11 6069499 6069521 -144714032 + (T)n Simple_repeat Simple_repeat 1 22 0 2865 113 6 3 chr11 6069687 6070190 -144713363 - HERVH LTR ERV1 -2672 5041 4489 * 5365 106 20 5 chr11 6070185 6071033 -144712520 - HERVH LTR ERV1 -3713 4000 3140 * 14348 110 10 22 chr11 6071012 6073795 -144709758 - HERVH LTR ERV1 -4718 2995 1 2626 72 97 5 chr11 6073805 6074209 -144709344 - LTR7 LTR ERV1 -9 441 1 332 194 32 0 chr11 6074563 6074687 -144708866 + (CTATT)n Simple_repeat Simple_repeat 1 128 0 499 282 106 0 chr11 6074687 6074829 -144708724 + L2 LINE L2 3116 3272 0 277 310 28 0 chr11 6074848 6074919 -144708634 + L2 LINE L2 3199 3271 -42 1128 217 134 26 chr11 6074927 6075351 -144708202 - MLT1C LTR MaLR 0 467 1 283 273 75 127 chr11 6075386 6075823 -144707730 + L2 LINE L2 2628 3052 -220 554 167 80 60 chr11 6077942 6078064 -144705489 - MER5C DNA MER1_type 0 324 197 2420 103 0 0 chr11 6078064 6078375 -144705178 + AluSq SINE Alu 1 311 -2 554 167 80 60 chr11 6078375 6078402 -144705151 - MER5C DNA MER1_type -127 197 172 1524 153 11 0 chr11 6078410 6078672 -144704881 - L1MD3 LINE L1 -5 7990 7726 736 206 39 7 chr11 6078674 6078829 -144704724 - MER5C DNA MER1_type -164 160 1 258 32 0 0 chr11 6079146 6079177 -144704376 + (T)n Simple_repeat Simple_repeat 1 31 0 584 191 0 9 chr11 6079177 6079287 -144704266 - MER50-int LTR ERV1 -7093 112 4 1408 128 0 60 chr11 6079289 6079380 -144704173 - MER50 LTR ERV1 0 734 639 2399 115 0 0 chr11 6079380 6079692 -144703861 + AluSp SINE Alu 1 312 -1 1408 128 0 60 chr11 6079692 6079851 -144703702 - MER50 LTR ERV1 -95 639 499 243 267 84 30 chr11 6080119 6080250 -144703303 + MIR SINE MIR 105 242 -20 410 333 33 0 chr11 6080545 6080665 -144702888 + L2 LINE L2 3147 3270 -2 1537 162 50 44 chr11 6080851 6081148 -144702405 + AluJo SINE Alu 1 299 -13 2264 106 0 3 chr11 6081167 6081460 -144702093 - AluSq SINE Alu -21 292 1 1665 99 14 133 chr11 6081460 6081822 -144701731 + MER4E LTR ERV1 461 779 0 3121 167 23 92 chr11 6081831 6081986 -144701567 + LTR8 LTR ERV1 2 166 -525 2209 82 32 7 chr11 6081986 6082267 -144701286 - AluSq SINE Alu -19 294 7 3121 167 23 92 chr11 6082267 6082852 -144700701 + LTR8 LTR ERV1 166 691 0 817 290 28 0 chr11 6082917 6083134 -144700419 + LTR16A LTR ERVL 215 437 -13 2654 59 0 0 chr11 6083268 6083575 -144699978 + AluY SINE Alu 1 307 -4 393 168 81 117 chr11 6083938 6084051 -144699502 - MER34 LTR ERV1 0 778 449 1230 90 19 0 chr11 6084090 6084246 -144699307 + AluSp SINE Alu 131 289 -24 558 0 0 0 chr11 6084246 6084308 -144699245 + (GGAA)n Simple_repeat Simple_repeat 3 64 0 2245 110 47 69 chr11 6084586 6084865 -144698688 + LTR23 LTR ERV1 1 285 -152 4739 107 25 71 chr11 6084865 6085217 -144698336 - MER4E LTR ERV1 0 779 412 2193 122 0 3 chr11 6085217 6085512 -144698041 + AluSc SINE Alu 1 294 -15 4739 107 25 71 chr11 6085512 6085740 -144697813 - MER4E LTR ERV1 -367 412 175 2139 109 0 11 chr11 6085740 6086024 -144697529 + AluSq SINE Alu 1 281 -32 4739 107 25 71 chr11 6086024 6086050 -144697503 - MER4E LTR ERV1 -604 175 149 396 0 0 0 chr11 6086050 6086094 -144697459 + (TA)n Simple_repeat Simple_repeat 2 45 0 4739 107 25 71 chr11 6086094 6086302 -144697251 - MER4E LTR ERV1 -630 149 1 2245 110 47 69 chr11 6086302 6086469 -144697084 + LTR23 LTR ERV1 285 437 0 977 79 0 7 chr11 6086627 6086766 -144696787 + MER4C LTR ERV1 1 138 -327 1397 92 0 5 chr11 6086768 6086952 -144696601 + AluSp SINE Alu 130 312 -1 1917 85 115 3 chr11 6086952 6087257 -144696296 + MER4C LTR ERV1 127 465 0 557 223 121 25 chr11 6087259 6087416 -144696137 + MIR SINE MIR 53 224 -38 946 191 126 65 chr11 6087418 6087800 -144695753 - LTR56 LTR ERV1 -21 424 20 180 0 0 0 chr11 6087802 6087822 -144695731 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 292 98 98 0 chr11 6088014 6088065 -144695488 + MIR SINE MIR 102 157 -105 744 176 53 18 chr11 6088067 6088237 -144695316 - LTR49 LTR ERV1 0 595 420 451 174 214 8 chr11 6088235 6088534 -144695019 - LTR29 LTR ERV1 -198 424 1 * 344 269 28 9 chr11 6088534 6088642 -144694911 + MIR SINE MIR 153 262 0 932 133 0 47 chr11 6091119 6091269 -144692284 - FLAM_C SINE Alu 0 143 1 2397 98 10 3 chr11 6091274 6091580 -144691973 - AluSc SINE Alu -1 308 1 695 227 133 10 chr11 6095431 6095634 -144687919 - MIR SINE MIR -20 242 15 269 351 137 16 chr11 6096343 6096591 -144686962 + L2 LINE L2 2951 3228 -44 684 294 38 13 chr11 6096971 6097206 -144686347 + L2 LINE L2 3073 3313 0 201 333 49 12 chr11 6097640 6097721 -144685832 + MIR SINE MIR 19 102 -106 1375 315 79 28 chr11 6097727 6098570 -144684983 + L2 LINE L2 1931 2817 -497 334 338 152 21 chr11 6098606 6098988 -144684565 + L2 LINE L2 2881 3312 -1 2241 109 3 3 chr11 6099042 6099344 -144684209 + AluSx SINE Alu 1 302 -10 229 204 0 0 chr11 6102845 6102889 -144680664 + GA-rich Low_complexity Low_complexity 1 44 0 417 340 66 33 chr11 6105130 6105465 -144678088 + L2 LINE L2 2550 2895 -419 220 322 91 16 chr11 6105656 6105777 -144677776 + L2 LINE L2 3162 3291 -22 184 135 19 19 chr11 6105789 6105841 -144677712 + (TTCA)n Simple_repeat Simple_repeat 1 52 0 445 290 76 58 chr11 6106252 6106476 -144677077 + Charlie8 DNA MER1_type 12 239 -2178 701 177 38 144 chr11 6106484 6106556 -144676997 + L1MC5 LINE L1 7203 7281 -680 2569 26 16 7 chr11 6106556 6106860 -144676693 - AluYb8 SINE Alu -11 307 1 701 177 38 144 chr11 6106860 6107154 -144676399 + L1MC5 LINE L1 7281 7530 -431 702 193 0 0 chr11 6107155 6107274 -144676279 + AluJo/FLAM SINE Alu 2 120 -192 2398 109 3 0 chr11 6107274 6107585 -144675968 - AluSq SINE Alu -1 312 1 860 181 0 0 chr11 6107585 6107718 -144675835 - AluJb SINE Alu -177 135 3 607 197 67 84 chr11 6107743 6107855 -144675698 + L1MC5 LINE L1 7629 7741 -220 1518 219 0 17 chr11 6107855 6108156 -144675397 - AluJb SINE Alu -16 296 1 607 197 67 84 chr11 6108156 6108327 -144675226 + L1MC5 LINE L1 7741 7907 -54 307 68 0 0 chr11 6108833 6108877 -144674676 + AluSc SINE Alu 250 293 -6 576 299 73 17 chr11 6108931 6109165 -144674388 + MIR SINE MIR 2 248 -14 264 189 0 0 chr11 6109614 6109688 -144673865 + CT-rich Low_complexity Low_complexity 2 75 0 2356 101 6 16 chr11 6110916 6111232 -144672321 - AluSq SINE Alu 0 313 1 884 267 50 23 chr11 6111236 6111536 -144672017 + L2 LINE L2 3006 3313 0 1720 56 112 72 chr11 6112301 6112552 -144671001 - AluSq SINE Alu -52 261 1 331 366 50 24 chr11 6112754 6113117 -144670436 + L2 LINE L2 2684 3059 -213 401 329 36 0 chr11 6114116 6114256 -144669297 - L2 LINE L2 -24 3248 3104 241 158 105 66 chr11 6114235 6114311 -144669242 + L2 LINE L2 3231 3309 -4 * 1195 317 113 29 chr11 6114530 6115499 -144668054 + L2 LINE L2 1527 2577 -737 2157 96 4 7 chr11 6115527 6115807 -144667746 - AluSx SINE Alu -16 296 18 668 290 90 30 chr11 6115824 6116329 -144667224 + L2 LINE L2 2772 3313 0 1583 281 152 29 chr11 6116341 6117210 -144666343 - L2 LINE L2 -609 2705 1730 29 47 0 0 chr11 6117860 6117903 -144665650 + GC_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr11 6118198 6118219 -144665334 + GC_rich Low_complexity Low_complexity 1 21 0 529 289 65 9 chr11 6118309 6118520 -144665033 - MIR SINE MIR 0 262 39 1473 157 73 4 chr11 6118829 6119103 -144664450 - AluJo SINE Alu -19 293 1 403 208 33 25 chr11 6119315 6119435 -144664118 - L1MC5 LINE L1 -21 7940 7820 233 250 0 18 chr11 6119538 6119594 -144663959 - L2 LINE L2 -232 3040 2986 189 0 0 0 chr11 6119610 6119631 -144663922 + (TTCA)n Simple_repeat Simple_repeat 3 23 0 774 339 65 20 chr11 6119631 6119960 -144663593 - L2 LINE L2 -5 3267 2954 2152 161 44 53 chr11 6119960 6120141 -144663412 + MSTA LTR MaLR 1 182 -246 2092 112 3 11 chr11 6120141 6120451 -144663102 + AluSq SINE Alu 1 308 0 2152 161 44 53 chr11 6120451 6120626 -144662927 + MSTA LTR MaLR 182 356 -72 2517 87 0 0 chr11 6120626 6120936 -144662617 - AluY SINE Alu -1 310 1 2152 161 44 53 chr11 6120936 6121007 -144662546 + MSTA LTR MaLR 356 426 -2 774 339 65 20 chr11 6121007 6121439 -144662114 - L2 LINE L2 -318 2954 2425 662 203 0 7 chr11 6122291 6122429 -144661124 - FLAM_C SINE Alu -4 139 3 653 319 62 53 chr11 6122461 6122910 -144660643 - L2 LINE L2 -1142 2172 1720 3858 132 18 26 chr11 6122953 6123672 -144659881 + L1MA7 LINE L1 5576 6288 -3 2253 93 0 27 chr11 6124028 6124328 -144659225 - AluSg SINE Alu -18 292 1 1187 284 105 59 chr11 6124421 6124930 -144658623 + MLT1K LTR MaLR 3 540 -48 2020 134 3 3 chr11 6124930 6125222 -144658331 - AluSx SINE Alu -15 297 6 1187 284 105 59 chr11 6125222 6125257 -144658296 + MLT1K LTR MaLR 540 572 -16 276 216 86 60 chr11 6125292 6125408 -144658145 + LTR50 LTR ERVL 17 135 -660 428 258 102 21 chr11 6125586 6125772 -144657781 + LTR33A LTR ERVL 323 523 0 24 0 0 0 chr11 6126021 6126045 -144657508 + AT_rich Low_complexity Low_complexity 1 24 0 1738 171 11 7 chr11 6126045 6126326 -144657227 - AluJo SINE Alu -30 282 1 659 335 47 35 chr11 6126988 6127418 -144656135 + L2 LINE L2 2466 2900 -414 1708 209 8 11 chr11 6127800 6128163 -144655390 + MLT1A1 LTR MaLR 4 365 0 2448 286 114 32 chr11 6131232 6131954 -144651599 + L2 LINE L2 1738 2399 -914 2195 104 10 3 chr11 6131954 6132243 -144651310 - AluSq SINE Alu -22 291 1 2448 286 114 32 chr11 6132243 6132962 -144650591 + L2 LINE L2 2399 3309 -4 2019 161 0 3 chr11 6133086 6133397 -144650156 - AluJb SINE Alu -2 310 1 1213 59 0 0 chr11 6133713 6133849 -144649704 + AluSx SINE Alu 1 136 -177 1298 110 0 0 chr11 6133879 6134065 -144649488 + AluSx SINE Alu 121 306 0 1697 153 67 27 chr11 6134219 6134519 -144649034 - AluJb SINE Alu 0 312 1 193 403 131 14 chr11 6136419 6136838 -144646715 - L2 LINE L2 -1 3271 2804 230 191 0 32 chr11 6137023 6137086 -144646467 + (CCA)n Simple_repeat Simple_repeat 3 63 0 279 114 0 0 chr11 6137590 6137634 -144645919 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 666 345 74 30 chr11 6137636 6138068 -144645485 - L2 LINE L2 -15 3257 2807 289 331 222 3 chr11 6138113 6138424 -144645129 - L2 LINE L2 -897 2417 2039 580 252 60 13 chr11 6138448 6138599 -144644954 - MER91A DNA MER1_type -16 180 23 180 315 18 36 chr11 6138628 6138739 -144644814 - L2 LINE L2 -1287 2027 1919 216 0 0 0 chr11 6139329 6139353 -144644200 + (A)n Simple_repeat Simple_repeat 1 24 0 426 284 226 8 chr11 6140567 6140810 -144642743 + L2 LINE L2 3017 3312 -1 1251 182 13 98 chr11 6143041 6143437 -144640116 + MLT1A1 LTR MaLR 1 362 -3 397 295 85 0 chr11 6143437 6143566 -144639987 - MIR SINE MIR -104 158 19 2096 169 61 2 chr11 6143588 6143997 -144639556 + MER63B DNA MER1_type 2 434 -2 334 322 11 0 chr11 6144022 6144109 -144639444 + L2 LINE L2 3210 3297 -16 2383 95 3 3 chr11 6144318 6144623 -144638930 - AluY SINE Alu -6 305 1 760 309 96 13 chr11 6144785 6145312 -144638241 + L2 LINE L2 2737 3313 0 2508 94 0 0 chr11 6146023 6146330 -144637223 - AluSq SINE Alu -6 307 1 194 338 42 0 chr11 6146554 6146625 -144636928 - L2 LINE L2 -7 3265 3192 537 328 179 33 chr11 6148294 6149200 -144634353 + L2 LINE L2 2233 3272 0 181 107 0 0 chr11 6150292 6150320 -144633233 - L2 LINE L2 0 3272 3245 649 272 96 43 chr11 6150398 6150944 -144632609 - L2 LINE L2 -213 3059 2428 202 368 35 18 chr11 6151566 6151680 -144631873 + L2 LINE L2 2931 3046 -226 431 298 111 17 chr11 6151750 6151931 -144631622 + L2 LINE L2 3111 3308 -5 279 211 293 0 chr11 6151956 6152089 -144631464 + L2 LINE L2 2297 2468 -846 254 178 0 0 chr11 6152204 6152249 -144631304 - L2 LINE L2 -94 3178 3134 203 100 0 25 chr11 6152249 6152289 -144631264 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 1999 134 13 39 chr11 6152845 6153151 -144630402 + AluJb SINE Alu 1 298 -14 563 247 147 0 chr11 6153954 6154124 -144629429 - MIR SINE MIR -62 200 6 588 284 48 52 chr11 6207487 6207737 -144575816 + MIR SINE MIR 6 254 -8 211 301 108 52 chr11 6207823 6208036 -144575517 - L2 LINE L2 -220 3052 2828 197 222 122 56 chr11 6208263 6208353 -144575200 - MIR SINE MIR -148 114 19 * 735 361 138 7 chr11 6208337 6209057 -144574496 - L2 LINE L2 -681 2633 1820 221 320 0 13 chr11 6209469 6209547 -144574006 + L2 LINE L2 290 366 -2948 346 135 0 0 chr11 6209551 6209603 -144573950 - MIR SINE MIR -28 234 183 2423 96 0 19 chr11 6209622 6209936 -144573617 - AluSx SINE Alu -2 310 3 462 298 186 34 chr11 6209962 6210408 -144573145 + L2 LINE L2 386 899 -2415 294 243 68 0 chr11 6210477 6210551 -144573002 + L2 LINE L2 2605 2683 -631 547 234 60 6 chr11 6211016 6211183 -144572370 + MER104 DNA MER2_type 3 178 -2 416 198 279 10 chr11 6211893 6212090 -144571463 - L1ME4a LINE L1 -15 6106 5857 201 294 71 35 chr11 6212168 6212253 -144571300 - MIR SINE MIR -155 107 20 11703 108 35 51 chr11 6215137 6217126 -144566427 - Tigger1 DNA MER2_type -462 1956 1 670 292 146 13 chr11 6218102 6218582 -144564971 + L2 LINE L2 2683 3220 -93 336 240 55 110 chr11 6218600 6218681 -144564872 + MIR SINE MIR 11 82 -180 1974 161 0 13 chr11 6218681 6218997 -144564556 - AluJb SINE Alu 0 312 1 336 240 55 110 chr11 6218997 6219061 -144564492 + MIR SINE MIR 82 148 -114 891 153 0 8 chr11 6219062 6219193 -144564360 + FLAM_A SINE Alu 2 131 -2 2426 97 0 0 chr11 6219210 6219520 -144564033 + AluSg SINE Alu 1 310 0 27 62 0 0 chr11 6219522 6219570 -144563983 + AT_rich Low_complexity Low_complexity 1 48 0 363 268 134 0 chr11 6219570 6219682 -144563871 + MIR SINE MIR 136 262 0 266 268 24 0 chr11 6220228 6220310 -144563243 - L2 LINE L2 -2914 400 317 830 270 68 89 chr11 6220411 6220877 -144562676 + L2 LINE L2 2736 3210 -103 603 114 19 19 chr11 6220877 6220982 -144562571 + L1MA4A LINE L1 6188 6292 -11 830 270 68 89 chr11 6220982 6220997 -144562556 + L2 LINE L2 3210 3224 -89 2254 103 3 3 chr11 6220997 6221298 -144562255 + AluSx SINE Alu 7 307 -5 830 270 68 89 chr11 6221298 6221406 -144562147 + L2 LINE L2 3224 3313 0 536 236 31 146 chr11 6221816 6222102 -144561451 - MER102a DNA MER1_type -1087 330 83 2313 101 0 7 chr11 6222102 6222398 -144561155 - AluSq SINE Alu -19 294 1 536 236 31 146 chr11 6222398 6222433 -144561120 - MER102a DNA MER1_type -1334 83 46 271 286 82 58 chr11 6222583 6222754 -144560799 + MIR SINE MIR 87 261 -1 2446 50 0 7 chr11 6224247 6224530 -144559023 - AluY SINE Alu -30 281 1 409 310 25 49 chr11 6224636 6224839 -144558714 + L2 LINE L2 3062 3259 -54 1098 268 29 20 chr11 6225219 6225562 -144557991 - L1ME3 LINE L1 0 6162 5817 802 218 53 0 chr11 6225666 6225854 -144557699 - L2 LINE L2 -971 2343 2146 262 245 92 31 chr11 6226084 6226182 -144557371 + LTR67 LTR ERVL 97 200 -357 280 287 43 0 chr11 6226351 6226445 -144557108 + LTR67 LTR ERVL 458 555 -2 288 0 0 0 chr11 6226521 6226553 -144557000 + (TG)n Simple_repeat Simple_repeat 2 33 0 430 315 105 6 chr11 6229054 6229235 -144554318 + MIR SINE MIR 48 246 -16 247 272 48 40 chr11 6229391 6229516 -144554037 + L2 LINE L2 2443 2568 -746 258 32 0 0 chr11 6229640 6229671 -144553882 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 544 252 37 7 chr11 6230339 6230474 -144553079 + MIR SINE MIR 15 153 -109 621 322 41 68 chr11 6230728 6231429 -144552124 + L2 LINE L2 2553 3237 -35 1361 295 212 33 chr11 6231461 6231923 -144551630 - L2 LINE L2 -8 3305 2927 1833 166 3 14 chr11 6231923 6232219 -144551334 + AluJo SINE Alu 1 293 -19 1361 295 212 33 chr11 6232219 6232441 -144551112 - L2 LINE L2 -386 2927 2746 875 165 0 0 chr11 6232441 6232574 -144550979 + FLAM_C SINE Alu 1 133 0 1361 295 212 33 chr11 6232574 6233206 -144550347 - L2 LINE L2 -567 2746 1747 378 0 0 0 chr11 6233294 6233336 -144550217 + (TGAA)n Simple_repeat Simple_repeat 1 42 0 247 233 96 14 chr11 6234059 6234132 -144549421 - L2 LINE L2 -45 3227 3149 205 284 49 107 chr11 6234373 6234598 -144548955 - L2 LINE L2 -458 2856 2645 875 239 0 0 chr11 6234807 6234983 -144548570 - FRAM SINE Alu -2 174 1 967 303 130 23 chr11 6234983 6235498 -144548055 - L2 LINE L2 -954 2360 1791 431 279 38 94 chr11 6235941 6236228 -144547325 - L2 LINE L2 -7 3265 2995 224 0 0 61 chr11 6236382 6236415 -144547138 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 200 400 24 0 chr11 6236416 6236541 -144547012 + L2 LINE L2 2415 2542 -772 266 271 132 78 chr11 6236549 6236678 -144546875 + MIR3 SINE MIR 38 173 -35 278 300 0 0 chr11 6237005 6237075 -144546478 + L2 LINE L2 3197 3266 -6 257 283 261 7 chr11 6237131 6237269 -144546284 + L3 LINE CR1 1314 1486 -91 214 120 20 60 chr11 6237772 6237822 -144545731 + G-rich Low_complexity Low_complexity 3 50 0 26 82 0 0 chr11 6238281 6238342 -144545211 + GC_rich Low_complexity Low_complexity 1 61 0 213 237 0 41 chr11 6238422 6238519 -144545034 + C-rich Low_complexity Low_complexity 2 94 0 404 203 175 68 chr11 6239063 6239240 -144544313 - MIR SINE MIR -17 245 50 783 284 50 67 chr11 6239939 6240093 -144543460 + L2 LINE L2 2864 3019 -253 2391 58 0 32 chr11 6240093 6240402 -144543151 - AluY SINE Alu -12 299 1 783 284 50 67 chr11 6240402 6240663 -144542890 + L2 LINE L2 3019 3272 0 474 248 67 0 chr11 6245115 6245220 -144538333 - L2 LINE L2 -3 3310 3199 256 313 36 18 chr11 6246970 6247082 -144536471 - MIR SINE MIR -40 222 109 296 351 90 45 chr11 6247874 6248162 -144535391 + L2 LINE L2 1138 1438 -1876 209 300 58 4 chr11 6248242 6248313 -144535240 - MIR SINE MIR -133 75 3 296 286 101 8 chr11 6248322 6248441 -144535112 - MIR SINE MIR -10 252 123 2425 73 0 17 chr11 6248503 6248805 -144534748 - AluSg SINE Alu -13 297 1 190 329 14 14 chr11 6249117 6249187 -144534366 - MIR SINE MIR -173 89 20 1611 304 220 45 chr11 6249666 6251696 -144531857 + L2 LINE L2 665 3061 -211 2255 119 47 39 chr11 6252791 6253152 -144530401 - THE1B LTR MaLR 0 364 1 449 260 67 0 chr11 6253905 6254009 -144529544 + L2 LINE L2 3197 3307 -6 1747 134 28 14 chr11 6254340 6254631 -144528922 - AluSq SINE Alu -14 299 5 30 0 0 0 chr11 6254704 6254734 -144528819 + AT_rich Low_complexity Low_complexity 1 30 0 363 324 105 32 chr11 6254943 6255570 -144527983 + HAL1b LINE L1 62 734 -614 239 222 0 37 chr11 6255619 6255673 -144527880 + MLT1K LTR MaLR 337 388 -200 450 292 38 52 chr11 6255775 6256024 -144527529 + MLT1L LTR MaLR 109 416 -199 307 198 74 12 chr11 6256120 6256201 -144527352 + MLT1L LTR MaLR 437 522 -93 213 39 0 0 chr11 6256201 6256227 -144527326 + (TTTTG)n Simple_repeat Simple_repeat 3 28 0 1777 152 7 11 chr11 6257120 6257389 -144526164 - AluJo SINE Alu -44 268 1 534 104 13 0 chr11 6258461 6258538 -144525015 - L1PA15 LINE L1 -6 6159 6082 2179 113 7 0 chr11 6258638 6258930 -144524623 - AluSq SINE Alu -19 294 1 13679 160 13 4 chr11 6258930 6261125 -144522428 - L1M1 LINE L1 -5106 2459 245 2049 218 59 49 chr11 6261129 6261249 -144522304 + L1M4 LINE L1 2933 3050 -3096 2354 83 0 32 chr11 6261249 6261563 -144521990 + AluSx SINE Alu 1 304 -8 2049 218 59 49 chr11 6261563 6262014 -144521539 + L1M4 LINE L1 3050 3515 -2631 414 0 0 0 chr11 6262014 6262060 -144521493 + (CA)n Simple_repeat Simple_repeat 1 46 0 2049 218 59 49 chr11 6262060 6262180 -144521373 + L1M4 LINE L1 3515 3632 -2514 294 95 0 0 chr11 6262181 6262223 -144521330 + (TCCC)n Simple_repeat Simple_repeat 4 45 0 1413 199 0 31 chr11 6262247 6262533 -144521020 - AluJo SINE Alu 0 312 36 330 361 57 0 chr11 6262557 6262715 -144520838 - L1M4 LINE L1 -529 5655 5489 755 182 42 0 chr11 6262739 6262882 -144520671 + MIR SINE MIR 21 169 -93 978 118 0 0 chr11 6263480 6263615 -144519938 - AluSq/x SINE Alu -174 139 5 413 313 68 11 chr11 6263619 6263795 -144519758 + L2 LINE L2 3128 3313 0 940 176 140 0 chr11 6263974 6264167 -144519386 - MLT1A1 LTR MaLR 0 365 146 740 137 11 0 chr11 6264169 6264350 -144519203 - L1MA9 LINE L1 -17 6295 6017 * 2032 116 9 19 chr11 6264349 6264668 -144518885 + L1MA9 LINE L1 5604 5919 -393 838 176 0 13 chr11 6264684 6264837 -144518716 - MLT1A1 LTR MaLR -214 151 1 473 254 9 0 chr11 6264956 6265070 -144518483 - HAL1 LINE L1 -815 1692 1578 1815 137 29 11 chr11 6265088 6265365 -144518188 - AluJb SINE Alu -26 286 5 343 291 55 24 chr11 6265526 6265653 -144517900 - L2 LINE L2 0 3272 3142 305 278 93 9 chr11 6268137 6268245 -144515308 + MIR SINE MIR 120 236 -26 419 276 35 25 chr11 6268472 6268675 -144514878 + L1MC4 LINE L1 7820 8024 -18 1696 182 55 0 chr11 6268733 6269024 -144514529 - AluJo SINE Alu -5 307 1 992 60 0 0 chr11 6269070 6269203 -144514350 - L1P4 LINE L1 -729 5432 5300 590 168 36 15 chr11 6269314 6269451 -144514102 - L1MA3 LINE L1 -255 6050 5911 4578 203 126 12 chr11 6269452 6270872 -144512681 - MER52A LTR ERV1 0 1755 1 15010 166 25 17 chr11 6270872 6271492 -144512061 - L1MA3 LINE L1 -392 5913 5300 2021 129 13 29 chr11 6271492 6271803 -144511750 - AluSx SINE Alu -6 306 1 2089 125 0 42 chr11 6271807 6272118 -144511435 - AluSq SINE Alu -15 298 1 15010 166 25 17 chr11 6272118 6275042 -144508511 - L1MA3 LINE L1 -1007 5298 2316 680 254 57 63 chr11 6275182 6275516 -144508037 + L1ME4a LINE L1 5518 5849 -272 5897 225 48 35 chr11 6275597 6276193 -144507360 - L1M4 LINE L1 -1278 4868 4281 2175 107 0 7 chr11 6276193 6276491 -144507062 - AluSc SINE Alu -13 296 1 5897 225 48 35 chr11 6276491 6277688 -144505865 - L1M4 LINE L1 -1865 4281 3051 501 171 0 0 chr11 6277692 6277768 -144505785 - FLAM SINE Alu -16 127 52 1044 261 93 66 chr11 6277781 6278416 -144505137 - L1MEc LINE L1 -4337 2059 1408 668 274 39 6 chr11 6278425 6278604 -144504949 - MLT1J1 LTR MaLR -261 185 1 1927 122 37 17 chr11 6279020 6279316 -144504237 - AluSg SINE Alu -8 302 1 275 206 79 20 chr11 6279651 6279765 -144503788 + L1MC/D LINE L1 5718 5851 -313 249 213 126 63 chr11 6279836 6279963 -144503590 + LTR50 LTR ERVL 23 157 -638 648 276 121 31 chr11 6280141 6280464 -144503089 + LTR50 LTR ERVL 442 793 -2 210 87 65 0 chr11 6281693 6281739 -144501814 + (TA)n Simple_repeat Simple_repeat 1 49 0 962 206 25 0 chr11 6281740 6281900 -144501653 - FRAM SINE Alu -2 164 1 703 287 141 23 chr11 6282470 6282860 -144500693 - MLT1J2 LTR MaLR -14 436 1 913 269 72 31 chr11 6282911 6283260 -144500293 - L2 LINE L2 -337 2977 2615 375 205 0 24 chr11 6283991 6284074 -144499479 + L2 LINE L2 1354 1434 -1880 223 224 105 13 chr11 6284236 6284312 -144499241 + MIR SINE MIR 164 246 -16 586 217 28 21 chr11 6284360 6284503 -144499050 + MER104 DNA Tc2 35 178 -2 330 326 29 36 chr11 6284914 6285052 -144498501 + L2 LINE L2 3104 3240 -32 1782 156 44 0 chr11 6286958 6287228 -144496325 - AluJb SINE Alu -30 282 1 3609 211 78 75 chr11 6287452 6288744 -144494809 + L1MC4 LINE L1 6658 7953 -89 21 36 0 0 chr11 6289325 6289353 -144494200 + AT_rich Low_complexity Low_complexity 1 28 0 246 62 0 0 chr11 6289524 6289556 -144493997 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 1051 284 39 70 chr11 6289556 6289832 -144493721 - L2 LINE L2 -13 3300 3044 2320 96 0 0 chr11 6289832 6290125 -144493428 + AluSg SINE Alu 1 293 -17 1051 284 39 70 chr11 6290125 6290330 -144493223 - L2 LINE L2 -269 3044 2834 222 37 0 0 chr11 6291301 6291328 -144492225 + (GGCTG)n Simple_repeat Simple_repeat 2 28 0 367 321 62 55 chr11 6292658 6292948 -144490605 - L2 LINE L2 -49 3223 2932 725 309 73 36 chr11 6293746 6294076 -144489477 - L2 LINE L2 -431 2883 2542 2292 114 7 3 chr11 6295859 6296167 -144487386 + AluSx SINE Alu 1 309 -3 311 333 44 90 chr11 6296609 6296906 -144486647 - L2 LINE L2 0 3272 2990 1930 136 0 36 chr11 6296906 6297215 -144486338 + AluJo SINE Alu 1 298 -14 311 333 44 90 chr11 6297215 6297238 -144486315 - L2 LINE L2 -282 2990 2967 792 242 34 86 chr11 6297243 6297416 -144486137 + L2 LINE L2 2998 3148 -165 2130 85 0 4 chr11 6297416 6297688 -144485865 - AluY SINE Alu -6 305 35 792 242 34 86 chr11 6297688 6297841 -144485712 + L2 LINE L2 3148 3307 -6 2182 121 41 89 chr11 6298007 6298242 -144485311 + MLT2C1 LTR ERVL 1 209 -188 862 191 56 31 chr11 6298242 6298404 -144485149 + FRAM SINE Alu 1 166 0 2182 121 41 89 chr11 6298404 6298583 -144484970 + MLT2C1 LTR ERVL 209 395 -2 330 324 97 0 chr11 6298595 6298771 -144484782 - L2 LINE L2 -1903 1411 1219 924 183 11 11 chr11 6298805 6298984 -144484569 - AluJb SINE Alu -7 305 140 761 254 141 5 chr11 6299126 6299346 -144484207 - MIR SINE MIR -3 259 14 740 274 115 10 chr11 6299374 6299688 -144483865 - L2 LINE L2 -5 3308 2962 804 264 204 39 chr11 6299715 6300121 -144483432 + MLT1J LTR MaLR 9 481 -30 2019 208 46 59 chr11 6300129 6300152 -144483401 + MLT1E2 LTR MaLR 1 23 -603 3794 107 27 4 chr11 6300152 6300667 -144482886 + MER1A DNA MER1_type 1 527 0 2019 208 46 59 chr11 6300667 6301283 -144482270 + MLT1E2 LTR MaLR 23 620 -6 230 154 0 0 chr11 6301289 6301328 -144482225 - MLT2B1 LTR ERVL -4 410 372 * 1665 174 47 4 chr11 6301322 6301674 -144481879 - MLT2B1 LTR ERVL -97 418 2 838 163 15 0 chr11 6301674 6301809 -144481744 + FLAM_C SINE Alu 1 137 -6 1798 220 58 111 chr11 6301842 6302598 -144480955 - L2 LINE L2 -352 2962 2247 2524 42 0 7 chr11 6302624 6302931 -144480622 - AluY SINE Alu -6 305 1 2293 110 0 0 chr11 6305675 6305985 -144477568 - AluSg SINE Alu 0 310 1 2066 122 0 3 chr11 6306085 6306379 -144477174 - AluSx SINE Alu -15 297 5 404 268 74 21 chr11 6306848 6307038 -144476515 - L2 LINE L2 0 3313 3114 243 330 30 0 chr11 6307411 6307511 -144476042 + L2 LINE L2 3211 3313 0 189 0 0 0 chr11 6308809 6308830 -144474723 + (A)n Simple_repeat Simple_repeat 1 21 0 2142 99 3 7 chr11 6308834 6309138 -144474415 + AluSx SINE Alu 1 303 -9 324 283 117 38 chr11 6309141 6309381 -144474172 + L2 LINE L2 2033 2291 -1023 425 300 159 5 chr11 6310485 6310705 -144472848 - MIR SINE MIR 0 262 9 189 121 0 0 chr11 6313035 6313068 -144470485 + (CA)n Simple_repeat Simple_repeat 2 34 0 309 274 17 43 chr11 6313791 6313908 -144469645 - L2 LINE L2 -569 2745 2632 234 313 178 24 chr11 6314161 6314508 -144469045 + L2 LINE L2 2649 3058 -214 34 24 0 0 chr11 6314968 6315009 -144468544 + GC_rich Low_complexity Low_complexity 1 41 0 970 320 167 18 chr11 6315710 6316733 -144466820 - L2 LINE L2 -209 3063 1916 1263 129 5 5 chr11 6316744 6316938 -144466615 - L1PA13 LINE L1 -14 6149 5956 2360 73 3 0 chr11 6317121 6317422 -144466131 + AluSg SINE Alu 1 302 -8 212 296 144 8 chr11 6319065 6319197 -144464356 - L2 LINE L2 -1003 2311 2162 206 290 194 11 chr11 6322247 6322340 -144461213 + MIR SINE MIR 20 129 -79 38 61 0 0 chr11 6323334 6323400 -144460153 + GC_rich Low_complexity Low_complexity 1 66 0 221 393 76 7 chr11 6324004 6324149 -144459404 - L2 LINE L2 -12 3260 3106 294 357 104 0 chr11 6324205 6324387 -144459166 - MIR SINE MIR -10 252 52 209 373 59 0 chr11 6324782 6324884 -144458669 - L2 LINE L2 -709 2605 2498 185 332 82 29 chr11 6324887 6325095 -144458458 - L2 LINE L2 -775 2539 2321 202 370 28 19 chr11 6329764 6329872 -144453681 - MIR SINE MIR -140 122 14 289 273 45 36 chr11 6330903 6331013 -144452540 + MIR SINE MIR 73 183 -79 286 343 82 40 chr11 6331466 6331944 -144451609 + L2 LINE L2 479 976 -2338 1432 233 110 21 chr11 6339071 6339605 -144443948 + Charlie1 DNA MER1_type 15 2761 0 487 261 0 49 chr11 6340271 6340413 -144443140 + MIR3 SINE MIR 9 143 -65 2578 179 31 17 chr11 6345687 6346207 -144437346 + MER82 DNA MER2_type 98 624 -29 239 267 0 0 chr11 6346465 6346525 -144437028 + L2 LINE L2 3254 3313 0 323 318 189 43 chr11 6347404 6347420 -144436133 + L2 LINE L2 1992 2004 -1310 1847 158 13 0 chr11 6347420 6347723 -144435830 - AluJo SINE Alu -5 307 1 792 167 8 0 chr11 6347723 6347849 -144435704 - FLAM_A SINE Alu -3 130 4 323 318 189 43 chr11 6347849 6348388 -144435165 + L2 LINE L2 2003 2629 -685 1194 174 38 9 chr11 6348423 6348636 -144434917 - MER20 DNA MER1_type 0 219 1 540 362 111 15 chr11 6348717 6349123 -144434430 + L2 LINE L2 2827 3271 -1 301 258 133 23 chr11 6349469 6349597 -144433956 + L2 LINE L2 2617 2758 -556 262 296 142 17 chr11 6349817 6349993 -144433560 + L2 LINE L2 3075 3272 0 1780 78 22 0 chr11 6350110 6350340 -144433213 + AluY SINE Alu 64 298 -13 240 111 0 0 chr11 6352726 6352762 -144430791 + (CAG)n Simple_repeat Simple_repeat 1 36 0 188 217 50 17 chr11 6353318 6353378 -144430175 + L2 LINE L2 1618 1679 -1635 513 291 98 81 chr11 6353461 6354292 -144429261 - L2 LINE L2 -5 3267 2407 276 309 155 46 chr11 6354519 6355405 -144428148 + L2 LINE L2 1799 2780 -534 256 318 114 15 chr11 6355784 6355916 -144427637 + L2 LINE L2 3125 3269 -3 180 306 56 0 chr11 6356233 6356305 -144427248 + MIR SINE MIR 113 188 -74 281 305 13 7 chr11 6357224 6357378 -144426175 + (CA)n Simple_repeat Simple_repeat 2 156 0 450 289 46 16 chr11 6358760 6358943 -144424610 - MIR SINE MIR -13 249 64 537 308 58 25 chr11 6359315 6359745 -144423808 - L2 LINE L2 -999 2315 1823 743 226 179 0 chr11 6359847 6360059 -144423494 + MIR SINE MIR 2 251 -11 630 275 72 13 chr11 6360074 6360310 -144423243 + MIR SINE MIR 7 256 -6 209 135 0 27 chr11 6360355 6360392 -144423161 - MIR SINE MIR -64 144 109 388 300 58 0 chr11 6360779 6360899 -144422654 - L2 LINE L2 -6 3307 3181 220 288 50 0 chr11 6361187 6361267 -144422286 - MIR SINE MIR -77 185 102 212 83 0 28 chr11 6361322 6361358 -144422195 + (TTTC)n Simple_repeat Simple_repeat 4 38 0 850 324 96 57 chr11 6362440 6364008 -144419545 - L2 LINE L2 -255 3017 1376 629 313 139 17 chr11 6364004 6364727 -144418826 + L2 LINE L2 2459 3272 0 * 212 98 0 24 chr11 6366718 6366759 -144416794 + (CGGG)n Simple_repeat Simple_repeat 3 42 0 1435 159 37 26 chr11 6367048 6367436 -144416117 - L1M2 LINE L1 -743 5548 5160 1094 220 0 8 chr11 6367433 6367669 -144415884 - L1M2 LINE L1 -2267 3879 3646 * 4977 61 2 0 chr11 6367740 6368359 -144415194 - L1PA6 LINE L1 0 6154 5535 23 54 0 0 chr11 6368508 6368545 -144415008 + AT_rich Low_complexity Low_complexity 1 37 0 530 204 32 83 chr11 6368884 6369041 -144414512 - L1ME3A LINE L1 -3 6167 6019 833 215 158 13 chr11 6369228 6369456 -144414097 - MIR SINE MIR 0 262 2 276 247 0 0 chr11 6369621 6369694 -144413859 + L2 LINE L2 2219 2291 -1023 309 326 8 36 chr11 6370375 6370644 -144412909 + GA-rich Low_complexity Low_complexity 1 261 0 * 326 300 18 41 chr11 6370641 6370811 -144412742 + G-rich Low_complexity Low_complexity 3 168 0 3516 70 2 4 chr11 6370916 6371389 -144412164 - L1P LINE L1 -987 5159 4688 820 319 80 30 chr11 6371399 6371639 -144411914 - LTR16C LTR ERVL 0 491 219 2083 162 75 15 chr11 6371639 6372041 -144411512 - MSTB LTR MaLR 0 426 1 820 319 80 30 chr11 6372041 6372226 -144411327 - LTR16C LTR ERVL -272 219 45 6742 64 26 0 chr11 6372889 6374444 -144409109 + L1PA7 LINE L1 4562 6148 -6 1048 236 15 30 chr11 6374451 6374703 -144408850 + L1ME3A LINE L1 5574 5823 -347 1679 124 16 8 chr11 6374703 6374952 -144408601 + AluSg SINE Alu 1 251 -59 1048 236 15 30 chr11 6374952 6374970 -144408583 + L1ME3A LINE L1 5823 5840 -330 583 51 0 0 chr11 6374966 6375044 -144408509 + L1P LINE L1 4735 4812 -1334 * 252 137 78 0 chr11 6375049 6375100 -144408453 + AluSg SINE Alu 248 302 0 997 254 46 38 chr11 6375101 6375448 -144408105 + L1ME3A LINE L1 5817 6166 -4 2344 186 60 4 chr11 6375526 6375993 -144407560 + MLT1D LTR MaLR 13 505 0 187 262 0 0 chr11 6376026 6376068 -144407485 + L2 LINE L2 3230 3271 -1 225 0 0 0 chr11 6377835 6377860 -144405693 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 906 95 44 0 chr11 6377885 6378022 -144405531 - L1MA3 LINE L1 -18 6287 6145 489 273 128 43 chr11 6378156 6378548 -144405005 + L1ME4a LINE L1 5672 6096 -25 1052 181 46 3 chr11 6378686 6378889 -144404664 + MER20 DNA MER1_type 2 214 -5 914 201 11 11 chr11 6379654 6379833 -144403720 + MER66B LTR ERV1 1 179 -307 335 212 7 117 chr11 6379831 6379968 -144403585 + MER66A LTR ERV1 286 407 -71 * 9084 247 47 27 chr11 6380006 6383215 -144400338 + MER66-int LTR ERV1 1210 4225 -3531 1124 81 0 0 chr11 6383215 6383364 -144400189 - THE1B-int LTR MaLR -1431 149 1 2203 140 19 25 chr11 6383365 6383730 -144399823 - THE1B LTR MaLR -1 363 1 2363 93 0 3 chr11 6383781 6384082 -144399471 - AluY SINE Alu -11 300 1 21 0 0 0 chr11 6385314 6385335 -144398218 + AT_rich Low_complexity Low_complexity 1 21 0 858 275 16 0 chr11 6387290 6387478 -144396075 - MLT1E LTR MaLR -4 589 399 566 268 30 45 chr11 6387478 6387676 -144395877 + MLT1A1 LTR MaLR 2 196 -169 2291 226 83 10 chr11 6388284 6388877 -144394676 - MER92B LTR ERV1 0 636 1 315 318 81 38 chr11 6389750 6390011 -144393542 + L2 LINE L2 3029 3300 -13 2086 101 35 0 chr11 6390014 6390300 -144393253 + AluSq SINE Alu 1 296 -17 1083 266 51 4 chr11 6391270 6391647 -144391906 - L1ME3A LINE L1 -208 5962 5570 5077 113 10 0 chr11 6391686 6392370 -144391183 - LTR8 LTR ERV1 0 691 1 244 178 56 22 chr11 6392648 6392738 -144390815 + (TTATA)n Simple_repeat Simple_repeat 2 94 0 336 256 41 72 chr11 6392933 6393128 -144390425 - HAL1 LINE L1 -1166 1341 1153 2414 100 0 0 chr11 6393366 6393677 -144389876 - AluSx SINE Alu -1 311 1 214 227 120 0 chr11 6393793 6393868 -144389685 + MER5B DNA MER1_type 90 173 -5 2223 130 0 3 chr11 6394914 6395221 -144388332 + AluSq SINE Alu 1 306 -7 2144 114 0 3 chr11 6396333 6396630 -144386923 - AluSx SINE Alu -15 297 2 193 321 0 0 chr11 6397087 6397143 -144386410 - MIR SINE MIR -3 259 204 1912 212 62 58 chr11 6397234 6397753 -144385800 + MLT1E3 LTR MaLR 102 622 -2 1383 258 10 7 chr11 6397755 6398239 -144385314 + MLT1E3-int LTR MaLR 1 602 -769 389 313 60 6 chr11 6398437 6398619 -144384934 + MLT1E3-int LTR MaLR 696 887 -484 981 304 113 30 chr11 6399182 6400024 -144383529 + L2 LINE L2 2355 3308 -5 837 276 225 13 chr11 6402535 6403010 -144380543 + L2 LINE L2 2199 2774 -540 2351 86 3 0 chr11 6403030 6403320 -144380233 - AluY SINE Alu -20 291 1 331 368 0 0 chr11 6406646 6406782 -144376771 + CT-rich Low_complexity Low_complexity 1 136 0 802 199 42 0 chr11 6406936 6407102 -144376451 + MIR SINE MIR 88 260 -2 474 204 52 64 chr11 6407142 6407314 -144376239 - MLT1D LTR MaLR -275 230 61 951 303 132 29 chr11 6409818 6410818 -144372735 + L2 LINE L2 1944 3038 -234 1844 174 27 0 chr11 6411071 6411369 -144372184 - AluJb SINE Alu -6 306 1 390 179 74 0 chr11 6411381 6411476 -144372077 - MIR SINE MIR 0 262 161 301 239 43 22 chr11 6411475 6411567 -144371986 + MIR SINE MIR 91 184 -78 * 197 65 32 0 chr11 6411567 6411598 -144371955 + (TCTA)n Simple_repeat Simple_repeat 1 32 0 189 0 0 0 chr11 6415119 6415140 -144368413 + (TCC)n Simple_repeat Simple_repeat 2 22 0 732 159 18 0 chr11 6416258 6416371 -144367182 + FLAM_C SINE Alu 9 123 -20 3165 227 74 43 chr11 6416482 6416549 -144367004 - L1MEc LINE L1 -2683 3463 3400 1426 155 79 94 chr11 6416549 6416857 -144366696 + THE1C LTR MaLR 1 303 -72 2273 107 0 0 chr11 6416857 6417146 -144366407 - AluSq SINE Alu -24 289 1 1426 155 79 94 chr11 6417146 6417218 -144366335 + THE1C LTR MaLR 303 375 0 3165 227 74 43 chr11 6417218 6417301 -144366252 - L1MEc LINE L1 -2746 3400 3321 720 147 16 39 chr11 6417301 6417430 -144366123 - FLAM_A SINE Alu -7 126 1 2280 92 0 3 chr11 6417435 6417727 -144365826 - AluSc SINE Alu -18 291 1 3165 227 74 43 chr11 6417727 6418788 -144364765 - L1MEc LINE L1 -2828 3318 2234 454 286 95 29 chr11 6419067 6419308 -144364245 + MIR SINE MIR 6 262 0 292 338 186 29 chr11 6419558 6419869 -144363684 - L2 LINE L2 -9 3263 2904 415 303 154 8 chr11 6419972 6420328 -144363225 - L2 LINE L2 -752 2562 2155 603 269 59 65 chr11 6421971 6422510 -144361043 - L2 LINE L2 -1094 2220 1685 233 327 125 37 chr11 6422537 6422864 -144360689 - L2 LINE L2 -1 3271 2916 445 345 120 36 chr11 6423120 6423638 -144359915 - L2 LINE L2 -715 2599 2009 2225 99 14 3 chr11 6423638 6423932 -144359621 + AluSg SINE Alu 1 297 -13 445 345 120 36 chr11 6423932 6424097 -144359456 - L2 LINE L2 -1305 2009 1859 306 297 123 13 chr11 6424171 6424326 -144359227 - MLT1K LTR MaLR -19 569 398 398 196 39 10 chr11 6424369 6424471 -144359082 - L1MD2 LINE L1 0 6359 6255 237 65 0 0 chr11 6424480 6424511 -144359042 + (TTA)n Simple_repeat Simple_repeat 2 32 0 849 211 0 6 chr11 6424514 6424670 -144358883 - AluSc SINE Alu -30 279 125 1436 173 7 83 chr11 6424677 6424977 -144358576 - AluJb SINE Alu -35 277 1 754 168 0 23 chr11 6424986 6425117 -144358436 - AluJo SINE Alu -178 134 7 1969 169 92 10 chr11 6425124 6425515 -144358038 - L1MD3 LINE L1 -157 7838 7416 403 171 89 24 chr11 6425516 6425600 -144357953 - MLT1F1 LTR MaLR -442 125 45 196 316 0 26 chr11 6425964 6426040 -144357513 + L2 LINE L2 2997 3070 -243 24 0 0 0 chr11 6427548 6427572 -144355981 + AT_rich Low_complexity Low_complexity 1 24 0 31 0 0 0 chr11 6428364 6428395 -144355158 + AT_rich Low_complexity Low_complexity 1 31 0 3709 155 23 84 chr11 6428612 6429439 -144354114 - L1MB8 LINE L1 -5 6355 5582 2184 132 3 7 chr11 6429439 6429749 -144353804 - AluSx SINE Alu -2 310 2 3709 155 23 84 chr11 6429749 6429794 -144353759 - L1MB8 LINE L1 -778 5582 5536 750 175 134 31 chr11 6429776 6429999 -144353554 - L1MCb LINE L1 -4914 1650 1405 * 716 186 20 17 chr11 6430001 6430285 -144353268 + CT-rich Low_complexity Low_complexity 1 284 0 3886 174 18 45 chr11 6430286 6431425 -144352128 - L1MCb LINE L1 -4849 1196 335 2258 176 76 44 chr11 6431452 6431534 -144352019 - L1MB8 LINE L1 -780 5548 5470 2147 134 0 7 chr11 6431534 6431840 -144351713 - AluSx SINE Alu -8 304 1 2258 176 76 44 chr11 6431840 6432348 -144351205 - L1MB8 LINE L1 -858 5470 4939 500 260 40 121 chr11 6432453 6432717 -144350836 + MLT1E-int LTR MaLR 1074 1309 -62 2042 138 65 6 chr11 6432717 6433071 -144350482 - THE1C LTR MaLR 0 375 1 500 260 40 121 chr11 6433071 6433129 -144350424 + MLT1E-int LTR MaLR 1309 1370 -1 2020 247 50 60 chr11 6433130 6433537 -144350016 + MLT1E LTR MaLR 1 402 -191 1163 219 75 64 chr11 6433537 6433898 -144349655 - MLT1A1 LTR MaLR 0 365 1 2020 247 50 60 chr11 6433898 6434089 -144349464 + MLT1E LTR MaLR 402 593 0 21086 30 3 0 chr11 6434636 6437894 -144345659 - L1PA4 LINE L1 -1 6154 2890 2287 120 0 0 chr11 6438169 6438478 -144345075 - AluSx SINE Alu -3 309 1 748 218 92 86 chr11 6439434 6439760 -144343793 + MER63B DNA MER1_type 6 333 -103 236 57 0 0 chr11 6439762 6439797 -144343756 - L1MB5 LINE L1 -8 6166 6132 340 194 0 0 chr11 6439831 6439898 -144343655 + L1M4 LINE L1 5007 5073 -1073 6293 218 37 35 chr11 6439913 6440641 -144342912 - L1MB8 LINE L1 -2977 3351 2626 2267 167 44 12 chr11 6440641 6441054 -144342499 + MSTB LTR MaLR 1 426 0 6293 218 37 35 chr11 6441054 6442394 -144341159 - L1MB8 LINE L1 -3702 2626 1308 1700 183 3 7 chr11 6442394 6442689 -144340864 - AluJo SINE Alu -14 298 5 6293 218 37 35 chr11 6442689 6443998 -144339555 - L1MB8 LINE L1 -5020 1308 2 306 306 48 7 chr11 6444004 6444151 -144339402 - L1MEc LINE L1 -4734 1662 1510 902 217 135 70 chr11 6444582 6444923 -144338630 - MLT1A1 LTR MaLR 0 365 3 22 0 0 0 chr11 6445529 6445551 -144338002 + AT_rich Low_complexity Low_complexity 1 22 0 3051 215 37 37 chr11 6446338 6447156 -144336397 - L1M4 LINE L1 -1712 4434 3617 2214 122 26 0 chr11 6447756 6447878 -144335675 + AluSx SINE Alu 1 118 -194 282 29 0 0 chr11 6447878 6447913 -144335640 + (CA)n Simple_repeat Simple_repeat 2 36 0 2214 122 26 0 chr11 6447913 6448094 -144335459 + AluSx SINE Alu 118 312 0 213 39 0 0 chr11 6448983 6449009 -144334544 + (T)n Simple_repeat Simple_repeat 1 26 0 186 300 40 0 chr11 6449621 6449671 -144333882 - L2 LINE L2 -98 3174 3123 498 355 80 60 chr11 6449756 6450646 -144332907 + L2 LINE L2 2066 2973 -341 261 314 89 8 chr11 6451057 6451233 -144332320 + L2 LINE L2 2146 2375 -939 207 114 0 0 chr11 6451523 6451558 -144331995 + (TG)n Simple_repeat Simple_repeat 2 36 0 1573 101 0 0 chr11 6451727 6451926 -144331627 + AluSq SINE Alu 1 199 -114 221 345 97 0 chr11 6452190 6452303 -144331250 - L2 LINE L2 0 3272 3149 4551 161 43 40 chr11 6452367 6452477 -144331076 + L1MA9 LINE L1 4355 4463 -1849 335 174 47 23 chr11 6452477 6452563 -144330990 + L1PA12 LINE L1 6081 6168 0 4551 161 43 40 chr11 6452563 6452994 -144330559 + L1MA9 LINE L1 4463 4891 -1421 1704 175 7 14 chr11 6452994 6453291 -144330262 - AluJb SINE Alu -13 299 5 4551 161 43 40 chr11 6453291 6454486 -144329067 + L1MA9 LINE L1 4891 6079 -233 323 353 131 31 chr11 6454889 6455363 -144328190 - L2 LINE L2 -6 3266 2743 681 264 77 4 chr11 6455378 6455613 -144327940 - MER112 DNA MER1_type -7 253 2 2625 18 0 0 chr11 6455778 6456063 -144327490 - L1PA2 LINE L1 0 6155 5871 187 208 113 0 chr11 6456649 6456702 -144326851 - L2 LINE L2 -672 2642 2584 2411 79 0 0 chr11 6457053 6457345 -144326208 - AluY SINE Alu -18 293 2 27 29 0 0 chr11 6458954 6458988 -144324565 + AT_rich Low_complexity Low_complexity 1 34 0 335 272 183 27 chr11 6460802 6461026 -144322527 - MER97c DNA MER1_type? -65 1025 767 896 111 11 99 chr11 6461081 6461262 -144322291 + MLT1C LTR MaLR 1 165 -302 209 200 0 0 chr11 6461270 6461310 -144322243 + (CATA)n Simple_repeat Simple_repeat 3 42 0 2466 70 3 0 chr11 6461310 6461611 -144321942 + AluSx SINE Alu 1 302 -10 1034 242 25 39 chr11 6461660 6461945 -144321608 + MLT1C LTR MaLR 187 467 0 2395 68 0 10 chr11 6462275 6462568 -144320985 - AluSq SINE Alu -23 290 1 551 195 18 26 chr11 6463609 6463722 -144319831 - MER97a DNA MER1_type? -390 504 393 990 95 0 0 chr11 6463736 6463862 -144319691 + LTR8 LTR ERV1 566 691 0 34778 103 86 73 chr11 6463862 6465088 -144318465 + HUERS-P1 LTR ERV1 1 1210 -5053 405 102 0 0 chr11 6465088 6465147 -144318406 + (TG)n Simple_repeat Simple_repeat 2 60 0 34778 103 86 73 chr11 6465147 6466884 -144316669 + HUERS-P1 LTR ERV1 1210 2924 -3339 2342 100 0 0 chr11 6466884 6467184 -144316369 + AluY SINE Alu 1 300 -11 34778 103 86 73 chr11 6467184 6467656 -144315897 + HUERS-P1 LTR ERV1 2924 3389 -2874 273 29 0 0 chr11 6467656 6467690 -144315863 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 2902 16 0 0 chr11 6467690 6467997 -144315556 - SVA Other Other -19 1367 1061 34778 103 86 73 chr11 6467997 6470147 -144313406 + HUERS-P1 LTR ERV1 3389 5808 -455 1101 15 8 8 chr11 6470147 6470281 -144313272 + AluY SINE Alu 174 307 -4 34778 103 86 73 chr11 6470281 6470743 -144312810 + HUERS-P1 LTR ERV1 5808 6263 0 4245 96 5 17 chr11 6470743 6471336 -144312217 + LTR8 LTR ERV1 1 586 -105 258 105 0 0 chr11 6471337 6471375 -144312178 + (A)n Simple_repeat Simple_repeat 1 38 0 1365 211 33 15 chr11 6471397 6471734 -144311819 - MER97c DNA MER1_type? -747 343 1 1993 157 0 0 chr11 6472914 6473208 -144310345 - AluJo SINE Alu -18 294 1 540 202 118 45 chr11 6473632 6473810 -144309743 - Charlie4 DNA MER1_type -1 1960 1770 676 188 38 0 chr11 6473829 6473962 -144309591 - Charlie4 DNA MER1_type -1807 154 17 2346 103 3 6 chr11 6474132 6474444 -144309109 - AluSq SINE Alu -2 311 1 540 332 78 27 chr11 6474634 6475009 -144308544 - L2 LINE L2 -192 3080 2699 1165 174 0 54 chr11 6475093 6475317 -144308236 + AluJo SINE Alu 1 212 -100 189 0 0 0 chr11 6475329 6475350 -144308203 + (A)n Simple_repeat Simple_repeat 1 21 0 1770 118 0 0 chr11 6475350 6475596 -144307957 + Tigger3(Golem) DNA MER2_type 2783 3028 -1 319 273 55 27 chr11 6475597 6475707 -144307846 - L2 LINE L2 -617 2697 2585 429 259 19 14 chr11 6475756 6475916 -144307637 - LTR33 LTR ERVL -8 513 319 670 250 133 0 chr11 6475970 6476158 -144307395 - LTR33 LTR ERVL -308 213 1 1974 95 12 0 chr11 6476178 6476430 -144307123 + AluSg SINE Alu 1 255 -55 200 204 0 23 chr11 6476436 6476480 -144307073 - L2 LINE L2 -80 3233 3191 2296 269 60 95 chr11 6476488 6477367 -144306186 + Charlie2b DNA MER1_type 7 826 -1956 2152 125 0 13 chr11 6477367 6477679 -144305874 - AluSx SINE Alu -4 308 1 2296 269 60 95 chr11 6477679 6478109 -144305444 + Charlie2b DNA MER1_type 826 1270 -1512 548 229 41 46 chr11 6478103 6478321 -144305232 + Charlie2b DNA MER1_type 2077 2293 -489 * 2805 245 65 26 chr11 6478386 6479287 -144304266 + L1ME3A LINE L1 5238 6170 0 2059 165 75 71 chr11 6479357 6479848 -144303705 + MLT1D LTR MaLR 13 505 0 230 322 0 0 chr11 6479862 6479921 -144303632 + L2 LINE L2 3211 3269 -3 186 322 122 0 chr11 6481316 6481431 -144302122 - L2 LINE L2 -5 3267 3139 921 147 96 189 chr11 6481438 6481771 -144301782 - AluSq SINE Alu 0 303 2 1474 77 6 0 chr11 6481918 6482099 -144301454 - AluSg/x SINE Alu -21 289 108 2383 89 0 0 chr11 6482280 6482573 -144300980 + AluSx SINE Alu 1 293 -19 379 216 166 0 chr11 6482674 6482813 -144300740 + HAL1b LINE L1 1186 1347 -1 966 214 68 19 chr11 6482893 6483099 -144300454 + MER20 DNA MER1_type 1 216 -3 1003 305 89 10 chr11 6484055 6484471 -144299082 - LTR16A LTR ERVL -1 449 1 2219 103 20 3 chr11 6484864 6485165 -144298388 + AluSx SINE Alu 1 306 -6 402 262 179 24 chr11 6485347 6485515 -144298038 - MIR SINE MIR -32 230 37 413 109 29 196 chr11 6485602 6485682 -144297871 - L1MA7 LINE L1 -260 6031 5982 2079 130 7 0 chr11 6485682 6485990 -144297563 - AluSx SINE Alu -2 310 1 413 109 29 196 chr11 6485990 6486047 -144297506 - L1MA7 LINE L1 -309 5982 5917 2418 71 0 10 chr11 6486447 6486742 -144296811 + AluSg SINE Alu 1 292 -18 2367 128 9 70 chr11 6487178 6487235 -144296318 - L1MA5 LINE L1 -7 6293 6234 2193 99 26 118 chr11 6487235 6487651 -144295902 - L1PA12 LINE L1 -7 6161 5784 2367 128 9 70 chr11 6487651 6487996 -144295557 - L1MA5 LINE L1 -66 6234 5918 2180 121 0 10 chr11 6487996 6488303 -144295250 - AluSx SINE Alu -8 304 1 2367 128 9 70 chr11 6488303 6488344 -144295209 - L1MA5 LINE L1 -382 5918 5876 691 93 39 62 chr11 6488418 6488547 -144295006 + LTR13 LTR ERVK 1 126 -881 * 7729 58 7 3 chr11 6488529 6489473 -144294080 + LTR13 LTR ERVK 60 1007 0 2125 126 3 0 chr11 6490168 6490470 -144293083 - AluSx SINE Alu -9 303 1 1528 126 40 0 chr11 6490975 6491197 -144292356 + AluSx SINE Alu 1 231 -81 22 0 0 0 chr11 6491320 6491342 -144292211 + AT_rich Low_complexity Low_complexity 1 22 0 271 238 105 29 chr11 6498210 6498315 -144285238 - MIR SINE MIR -114 148 36 218 333 14 14 chr11 6498371 6498443 -144285110 + L2 LINE L2 352 423 -2891 383 245 128 0 chr11 6498726 6498828 -144284725 - L2 LINE L2 0 3313 3199 227 356 52 17 chr11 6498832 6498947 -144284606 - L2 LINE L2 -15 3257 3139 800 216 167 39 chr11 6499123 6499405 -144284148 - L2 LINE L2 0 3313 2996 412 147 13 0 chr11 6500398 6500473 -144283080 - LTR33A LTR ERVL -1 522 447 2051 135 6 25 chr11 6500494 6500812 -144282741 + AluSx SINE Alu 1 312 0 380 219 76 90 chr11 6500812 6500916 -144282637 - LTR50 LTR ERVL -184 611 507 1780 178 7 0 chr11 6500916 6501220 -144282333 + AluJo SINE Alu 1 306 -6 380 219 76 90 chr11 6501220 6501295 -144282258 - LTR50 LTR ERVL -288 507 349 2248 120 3 0 chr11 6501298 6501598 -144281955 + AluSp SINE Alu 1 301 -12 650 266 145 0 chr11 6501601 6501842 -144281711 - LTR50 LTR ERVL -517 278 3 699 289 69 24 chr11 6501965 6502211 -144281342 + MIR SINE MIR 4 260 -2 1624 178 45 20 chr11 6502270 6502562 -144280991 + AluJb SINE Alu 1 299 -13 341 291 58 0 chr11 6502620 6502723 -144280830 + L3 LINE CR1 1270 1378 -199 309 298 0 43 chr11 6502922 6503063 -144280490 + GA-rich Low_complexity Low_complexity 1 135 0 2058 128 3 3 chr11 6503480 6503811 -144279742 - AluSx SINE Alu 0 312 1 25 0 0 0 chr11 6505787 6505812 -144277741 + AT_rich Low_complexity Low_complexity 1 25 0 300 224 0 0 chr11 6506582 6506640 -144276913 - L2 LINE L2 -1 3312 3255 28 29 0 0 chr11 6509400 6509435 -144274118 + AT_rich Low_complexity Low_complexity 1 35 0 251 278 0 14 chr11 6509477 6509549 -144274004 + L1ME LINE L1 5703 5773 -397 1848 236 52 29 chr11 6509833 6510355 -144273198 - MER87 LTR ERV1 -7 534 1 5100 222 28 42 chr11 6510851 6511344 -144272209 - L1MA8 LINE L1 -5 6286 5787 225 0 0 0 chr11 6511344 6511369 -144272184 + (TG)n Simple_repeat Simple_repeat 2 26 0 5100 222 28 42 chr11 6511369 6511385 -144272168 - L1MA8 LINE L1 -504 5787 5772 225 0 0 0 chr11 6511385 6511410 -144272143 + (CA)n Simple_repeat Simple_repeat 2 26 0 5100 222 28 42 chr11 6511410 6511873 -144271680 - L1MA8 LINE L1 -519 5772 5304 2423 77 3 0 chr11 6511873 6512173 -144271380 - AluY SINE Alu -10 301 1 5100 222 28 42 chr11 6512173 6513955 -144269598 - L1MA8 LINE L1 -987 5304 3581 305 321 88 38 chr11 6514119 6514381 -144269172 - L1ME LINE L1 -454 5667 5393 23 0 0 0 chr11 6514732 6514755 -144268798 + AT_rich Low_complexity Low_complexity 1 23 0 246 274 19 9 chr11 6514933 6515039 -144268514 - L1ME LINE L1 -1525 4621 4515 738 301 141 19 chr11 6515061 6515600 -144267953 + L2 LINE L2 1330 1934 -1380 243 88 0 0 chr11 6515600 6515634 -144267919 + (TA)n Simple_repeat Simple_repeat 2 35 0 962 17 8 0 chr11 6515637 6515756 -144267797 - L1PA5 LINE L1 0 6154 6035 425 265 85 11 chr11 6516412 6516601 -144266952 - Charlie7 DNA MER1_type -607 2005 1803 2355 190 81 26 chr11 6516606 6517069 -144266484 - L1MD1 LINE L1 -179 6063 5543 890 103 314 0 chr11 6517069 6517244 -144266309 - MER30 DNA MER1_type 0 230 1 2355 190 81 26 chr11 6517244 6517436 -144266117 - L1MD1 LINE L1 -699 5543 5363 195 42 0 0 chr11 6517444 6517468 -144266085 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 252 315 22 16 chr11 6517967 6518151 -144265402 - AluJb SINE Alu -10 292 108 726 211 77 35 chr11 6518446 6518520 -144265033 - L1MB7 LINE L1 -304 5880 5811 1811 180 0 0 chr11 6518520 6518835 -144264718 - AluSx SINE Alu 0 315 1 726 211 77 35 chr11 6518835 6519019 -144264534 - L1MB7 LINE L1 -373 5811 5610 1274 199 15 7 chr11 6519023 6519374 -144264179 - L1MB7 LINE L1 -714 5470 5118 495 294 121 9 chr11 6521411 6521642 -144261911 - MIR SINE MIR -1 261 5 1440 201 33 23 chr11 6521954 6522067 -144261486 + AluJo SINE Alu 2 112 -200 405 0 0 0 chr11 6522067 6522112 -144261441 + (CA)n Simple_repeat Simple_repeat 2 46 0 1440 201 33 23 chr11 6522112 6522297 -144261256 + AluJo SINE Alu 112 303 -9 489 253 39 43 chr11 6523192 6523425 -144260128 - L1M2 LINE L1 -646 5666 5435 1134 124 0 0 chr11 6523452 6523613 -144259940 - AluSq SINE Alu -24 289 129 599 320 84 35 chr11 6523644 6524153 -144259400 - L2 LINE L2 -1076 2238 1705 638 133 0 0 chr11 6524155 6524292 -144259261 - AluSg/x SINE Alu 0 330 194 237 333 135 0 chr11 6524297 6524423 -144259130 - L2 LINE L2 -1814 1500 1358 507 239 23 0 chr11 6525653 6525783 -144257770 - FLAM_C SINE Alu -10 133 1 316 310 54 87 chr11 6525811 6526108 -144257445 - L2 LINE L2 -396 2918 2632 2313 143 105 16 chr11 6526108 6526556 -144256997 + LTR45B LTR ERV1 2 489 0 316 310 54 87 chr11 6526556 6526590 -144256963 - L2 LINE L2 -682 2632 2598 194 340 112 15 chr11 6526638 6526835 -144256718 - L2 LINE L2 -1105 2209 1994 236 113 57 19 chr11 6526992 6527045 -144256508 - MIR3 SINE MIR -7 201 147 432 0 0 0 chr11 6527654 6527702 -144255851 + (TG)n Simple_repeat Simple_repeat 2 49 0 1545 151 0 99 chr11 6527703 6528015 -144255538 - AluJb SINE Alu -27 285 5 270 297 61 24 chr11 6528163 6528328 -144255225 - MIR SINE MIR -73 189 19 189 352 11 11 chr11 6533153 6533241 -144250312 + L2 LINE L2 2228 2315 -999 2373 93 0 0 chr11 6533890 6534191 -144249362 - AluY SINE Alu -10 301 1 23 0 0 0 chr11 6534406 6534429 -144249124 + AT_rich Low_complexity Low_complexity 1 23 0 197 264 69 69 chr11 6534447 6534534 -144249019 - MIR SINE MIR -158 104 18 204 136 0 68 chr11 6534768 6534812 -144248741 + MIR SINE MIR 222 262 0 3216 70 5 0 chr11 6535328 6535768 -144247785 - THE1B-int LTR MaLR -1138 442 1 1039 131 15 50 chr11 6535768 6535966 -144247587 - THE1B LTR MaLR 0 364 174 731 33 0 0 chr11 6535966 6536057 -144247496 - AluYb8 SINE Alu -2 316 226 4933 145 10 6 chr11 6536251 6537178 -144246375 + L1PA12 LINE L1 5166 6098 -70 2194 113 0 0 chr11 6537233 6537516 -144246037 + AluSc SINE Alu 1 283 -26 398 322 27 14 chr11 6537840 6537986 -144245567 + L2 LINE L2 3154 3301 -12 329 316 42 53 chr11 6538011 6538201 -144245352 - MIR SINE MIR -67 195 8 198 0 0 0 chr11 6538677 6538699 -144244854 + (T)n Simple_repeat Simple_repeat 1 22 0 1444 106 55 0 chr11 6539174 6539392 -144244161 - MER30 DNA MER1_type 0 230 1 196 305 103 46 chr11 6539932 6540106 -144243447 - L2 LINE L2 -251 3021 2838 263 91 0 45 chr11 6540408 6540452 -144243101 - THE1B LTR MaLR -322 42 1 1965 75 33 23 chr11 6540462 6540769 -144242784 - THE1B-int LTR MaLR -11 1569 1260 803 170 61 31 chr11 6540778 6540992 -144242561 - THE1C LTR MaLR -191 184 1 2393 75 7 0 chr11 6541052 6541345 -144242208 + AluY SINE Alu 1 295 -16 291 347 155 19 chr11 6541351 6541622 -144241931 - L2 LINE L2 -626 2688 2381 12776 72 7 1 chr11 6541784 6543546 -144240007 + PABL_A-int LTR ERV1 3243 5015 0 4537 68 39 45 chr11 6543546 6543805 -144239748 + PABL_A LTR ERV1 1 260 -400 1942 129 0 18 chr11 6543805 6544136 -144239417 - AluY SINE Alu 0 326 1 4537 68 39 45 chr11 6544136 6544538 -144239015 + PABL_A LTR ERV1 260 660 0 312 349 85 25 chr11 6544539 6544774 -144238779 - L2 LINE L2 -468 2846 2598 197 195 0 0 chr11 6545290 6545331 -144238222 + MIR3 SINE MIR 161 201 -7 321 297 45 74 chr11 6545719 6545988 -144237565 + L2 LINE L2 2598 2858 -456 206 333 143 9 chr11 6546099 6546204 -144237349 + MIR SINE MIR 27 145 -63 431 345 110 44 chr11 6546985 6547304 -144236249 + L2 LINE L2 2933 3272 0 6376 79 15 30 chr11 6547820 6548755 -144234798 - THE1B-int LTR MaLR -659 921 1 2107 121 53 31 chr11 6548755 6549111 -144234442 - THE1B LTR MaLR 0 364 1 2331 173 32 12 chr11 6549111 6549607 -144233946 - L1MC3 LINE L1 -575 7210 6705 5384 137 9 6 chr11 6549755 6550683 -144232870 + L1PA12 LINE L1 5166 6098 -70 2304 102 0 0 chr11 6550739 6551033 -144232520 + AluSc SINE Alu 1 294 -15 380 329 27 14 chr11 6551349 6551495 -144232058 + L2 LINE L2 3154 3301 -12 334 316 42 53 chr11 6551520 6551710 -144231843 - MIR SINE MIR -67 195 8 234 0 0 0 chr11 6552181 6552207 -144231346 + (T)n Simple_repeat Simple_repeat 1 26 0 1430 110 55 0 chr11 6552683 6552901 -144230652 - MER30 DNA MER1_type 0 230 1 185 305 103 46 chr11 6553441 6553615 -144229938 - L2 LINE L2 -251 3021 2838 22 0 0 0 chr11 6553664 6553686 -144229867 + AT_rich Low_complexity Low_complexity 1 22 0 348 179 26 0 chr11 6553739 6553856 -144229697 + (TA)n Simple_repeat Simple_repeat 1 120 0 200 175 29 10 chr11 6553885 6553988 -144229565 + (TA)n Simple_repeat Simple_repeat 2 106 0 345 209 146 32 chr11 6553997 6554155 -144229398 - L1ME4a LINE L1 -23 6098 5923 710 253 93 15 chr11 6554345 6554677 -144228876 - Charlie7 DNA MER1_type -452 2160 1803 2546 190 81 26 chr11 6554682 6555145 -144228408 - L1MD1 LINE L1 -179 6063 5543 900 97 314 0 chr11 6555145 6555320 -144228233 - MER30 DNA MER1_type 0 230 1 2546 190 81 26 chr11 6555320 6555512 -144228041 - L1MD1 LINE L1 -699 5543 5363 195 42 0 0 chr11 6555520 6555544 -144228009 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 302 306 79 104 chr11 6555549 6555990 -144227563 - HAL1 LINE L1 -1046 1461 1032 1956 139 0 0 chr11 6556033 6556334 -144227219 - AluSx SINE Alu 0 301 1 1895 166 0 0 chr11 6556571 6556872 -144226681 - AluJb SINE Alu -11 301 1 305 291 92 28 chr11 6556966 6557107 -144226446 - HAL1b LINE L1 -869 479 330 254 282 86 61 chr11 6557213 6557376 -144226177 + L2 LINE L2 2621 2787 -527 31 26 0 0 chr11 6557472 6557510 -144226043 + AT_rich Low_complexity Low_complexity 1 38 0 190 241 35 0 chr11 6557927 6557985 -144225568 + MIR SINE MIR 99 158 -104 2539 40 3 7 chr11 6559766 6560069 -144223484 - AluY SINE Alu -9 302 1 633 327 19 34 chr11 6560612 6560933 -144222620 - L1ME4a LINE L1 -2077 5731 5416 1599 177 14 31 chr11 6561308 6561602 -144221951 - AluJo SINE Alu -15 297 9 1627 154 52 33 chr11 6561627 6561933 -144221620 - AluSx SINE Alu 0 312 1 186 344 135 50 chr11 6562334 6562889 -144220664 - L2 LINE L2 -348 2966 2365 225 293 187 0 chr11 6563064 6563187 -144220366 - L2 LINE L2 0 3313 3168 632 281 24 0 chr11 6563435 6563602 -144219951 + MIR SINE MIR 92 262 0 449 293 117 59 chr11 6563716 6563900 -144219653 + L2 LINE L2 2949 3121 -192 189 0 0 0 chr11 6563900 6563921 -144219632 + (TTAA)n Simple_repeat Simple_repeat 2 22 0 2110 99 7 0 chr11 6563921 6564205 -144219348 - AluSp SINE Alu -27 286 1 449 293 117 59 chr11 6564205 6564360 -144219193 + L2 LINE L2 3120 3309 -4 184 371 0 0 chr11 6564460 6564522 -144219031 - MIR SINE MIR -1 261 200 7235 36 1 21 chr11 6566591 6568033 -144215520 + L1PA5 LINE L1 4722 6145 -9 22 0 0 0 chr11 6568316 6568338 -144215215 + AT_rich Low_complexity Low_complexity 1 22 0 472 292 15 22 chr11 6568411 6568548 -144215005 - L2 LINE L2 -9 3304 3169 2165 210 12 37 chr11 6569328 6569843 -144213710 + MLT1D LTR MaLR 4 505 0 465 294 195 43 chr11 6569932 6570237 -144213316 + L2 LINE L2 1390 1647 -1667 782 137 37 12 chr11 6570237 6570398 -144213155 - L1MB8 LINE L1 0 6178 6014 465 294 195 43 chr11 6570398 6570693 -144212860 + L2 LINE L2 1647 2081 -1233 518 148 31 39 chr11 6570784 6570912 -144212641 - L1MA10 LINE L1 -1 6333 6207 349 244 24 85 chr11 6570935 6571099 -144212454 + L2 LINE L2 2255 2408 -906 6824 177 14 13 chr11 6571530 6572896 -144210657 - MSTB-int LTR MaLR -219 1361 1 794 164 22 0 chr11 6572896 6573030 -144210523 - MSTB LTR MaLR -2 424 288 23 54 0 0 chr11 6575756 6575793 -144207760 + AT_rich Low_complexity Low_complexity 1 37 0 1809 166 10 0 chr11 6577708 6577998 -144205555 - AluSx SINE Alu -17 295 3 910 132 0 22 chr11 6578107 6578243 -144205310 + FLAM_C SINE Alu 1 133 0 356 371 65 12 chr11 6578825 6579146 -144204407 + HAL1b LINE L1 95 432 -916 2306 87 3 0 chr11 6579960 6580260 -144203293 + AluY SINE Alu 1 301 -10 225 295 117 38 chr11 6580598 6580940 -144202613 + L1MB1 LINE L1 3590 3958 -2188 2100 128 0 19 chr11 6581296 6581608 -144201945 + AluSx SINE Alu 2 307 -5 25 65 0 0 chr11 6581890 6581936 -144201617 + AT_rich Low_complexity Low_complexity 1 46 0 22 35 0 0 chr11 6581993 6582022 -144201531 + AT_rich Low_complexity Low_complexity 1 29 0 206 227 0 0 chr11 6582328 6582372 -144201181 + A-rich Low_complexity Low_complexity 4 47 0 34 65 0 0 chr11 6582383 6582445 -144201108 + AT_rich Low_complexity Low_complexity 1 62 0 4524 175 27 31 chr11 6582515 6582765 -144200788 + L1MB1 LINE L1 4778 5028 -1140 1805 149 4 0 chr11 6582765 6583040 -144200513 + AluSp SINE Alu 30 305 -8 4524 175 27 31 chr11 6583040 6584179 -144199374 + L1MB1 LINE L1 5028 6161 -7 22 0 0 0 chr11 6584587 6584609 -144198944 + AT_rich Low_complexity Low_complexity 1 22 0 195 308 6 141 chr11 6584685 6584841 -144198712 - MIR SINE MIR -79 183 49 492 195 11 0 chr11 6585028 6585115 -144198438 - MER58B DNA MER1_type 0 341 254 180 0 0 0 chr11 6585142 6585162 -144198391 + (TAAA)n Simple_repeat Simple_repeat 4 23 0 773 237 59 23 chr11 6585221 6585440 -144198113 - MER58B DNA MER1_type -114 227 1 181 327 158 0 chr11 6585636 6585737 -144197816 + L2 LINE L2 3197 3313 0 2147 107 4 0 chr11 6585829 6586139 -144197414 + AluSx SINE Alu 1 311 0 252 292 63 69 chr11 6587366 6587539 -144196014 + MIR SINE MIR 11 183 -79 573 320 63 5 chr11 6587644 6587866 -144195687 - L2 LINE L2 -1 3312 3078 253 241 13 25 chr11 6588087 6588166 -144195387 + L1MC/D LINE L1 5692 5769 -2039 386 307 76 43 chr11 6588719 6589299 -144194254 - LTR57-int LTR ERVL -2560 2783 2225 261 330 41 0 chr11 6589312 6589409 -144194144 - LTR57-int LTR ERVL -3276 2067 1967 1741 194 32 55 chr11 6589410 6589844 -144193709 - LTR47B LTR ERVL -19 424 1 460 303 98 57 chr11 6590379 6590746 -144192807 + L2 LINE L2 2877 3258 -55 203 349 46 46 chr11 6590769 6590921 -144192632 - L2 LINE L2 -654 2660 2509 2262 101 0 0 chr11 6590929 6591217 -144192336 + AluSx SINE Alu 13 300 -12 2448 80 0 0 chr11 6591793 6592094 -144191459 + AluY SINE Alu 1 301 -10 183 331 57 38 chr11 6592743 6592900 -144190653 - L2 LINE L2 -999 2315 2156 197 182 0 68 chr11 6593099 6593143 -144190410 - MIR SINE MIR 0 262 222 192 287 58 58 chr11 6593377 6593464 -144190089 + MIR SINE MIR 18 104 -158 23 0 0 0 chr11 6593482 6593505 -144190048 + AT_rich Low_complexity Low_complexity 1 23 0 2375 89 0 3 chr11 6593720 6594022 -144189531 + AluSg SINE Alu 1 301 -9 208 173 40 40 chr11 6594056 6594131 -144189422 + (TTATA)n Simple_repeat Simple_repeat 1 75 0 1575 165 6 84 chr11 6594290 6594624 -144188929 - AluJo SINE Alu -4 308 1 395 300 47 88 chr11 6594664 6594949 -144188604 - L2 LINE L2 -410 2904 2632 2334 145 102 16 chr11 6594949 6595398 -144188155 + LTR45B LTR ERV1 2 489 0 395 300 47 88 chr11 6595398 6595432 -144188121 - L2 LINE L2 -682 2632 2598 208 340 112 15 chr11 6595480 6595677 -144187876 - L2 LINE L2 -1105 2209 1994 231 113 57 19 chr11 6595834 6595887 -144187666 - MIR3 SINE MIR -7 201 147 423 0 0 0 chr11 6596498 6596545 -144187008 + (TG)n Simple_repeat Simple_repeat 2 48 0 1515 157 0 99 chr11 6596546 6596858 -144186695 - AluJb SINE Alu -27 285 5 568 281 51 6 chr11 6597005 6597183 -144186370 - MIR SINE MIR -73 189 4 485 325 102 11 chr11 6597610 6597884 -144185669 + L2 LINE L2 2570 2868 -446 1745 232 30 48 chr11 6597898 6598563 -144184990 - L1M4 LINE L1 -2468 3678 3026 4819 180 49 5 chr11 6598587 6599062 -144184491 - L1MA7 LINE L1 -22 6269 5817 1829 171 44 21 chr11 6599062 6599402 -144184151 - MER7A DNA MER2_type 0 346 1 4819 180 49 5 chr11 6599402 6600529 -144183024 - L1MA7 LINE L1 -474 5817 4590 1186 198 90 0 chr11 6600529 6600797 -144182756 - MSTB1 LTR MaLR -140 292 1 1821 160 57 19 chr11 6600797 6601216 -144182337 - L1MA7 LINE L1 -1707 4439 4005 2422 173 6 35 chr11 6601219 6601700 -144181853 - MER52A LTR ERV1 0 1755 1289 4004 167 118 156 chr11 6601947 6602612 -144180941 - L1 LINE L1 -863 5283 4594 912 207 119 0 chr11 6602612 6602873 -144180680 - MSTB1 LTR MaLR -140 292 1 4004 167 118 156 chr11 6602873 6603296 -144180257 - L1 LINE L1 -1552 4594 4157 8214 165 112 23 chr11 6603296 6604908 -144178645 - MER52A LTR ERV1 0 1755 1 4004 167 118 156 chr11 6604908 6605435 -144178118 - L1 LINE L1 -1989 4157 3478 839 244 32 8 chr11 6605612 6605862 -144177691 - L1M4 LINE L1 -6256 286 31 367 311 73 23 chr11 6606032 6606251 -144177302 + MIR SINE MIR 33 262 0 2626 40 0 3 chr11 6606420 6606723 -144176830 - AluY SINE Alu -9 302 1 1194 151 8 40 chr11 6606989 6607061 -144176492 + L1MA8 LINE L1 6032 6105 -186 1947 172 52 41 chr11 6607061 6607480 -144176073 - MSTB LTR MaLR 0 426 3 1194 151 8 40 chr11 6607480 6607658 -144175895 + L1MA8 LINE L1 6105 6274 -17 2282 101 0 16 chr11 6607682 6607988 -144175565 + AluSg SINE Alu 1 301 -9 552 122 0 11 chr11 6607988 6608078 -144175475 + L1MB3 LINE L1 6055 6143 -40 290 177 32 0 chr11 6608084 6608146 -144175407 + L1 LINE L1 3816 3879 -2267 332 238 148 8 chr11 6608200 6608322 -144175231 + LTR37B LTR ERV1 330 468 0 21 0 0 0 chr11 6608374 6608395 -144175158 + AT_rich Low_complexity Low_complexity 1 21 0 2293 232 35 3 chr11 6608834 6609438 -144174115 + L1ME1 LINE L1 5539 6161 -5 22 35 0 0 chr11 6609571 6609600 -144173953 + AT_rich Low_complexity Low_complexity 1 29 0 370 346 54 19 chr11 6609736 6609941 -144173612 - HAL1 LINE L1 -869 1638 1427 420 249 30 117 chr11 6614962 6615159 -144168394 + MIR SINE MIR 70 249 -13 441 66 0 0 chr11 6615279 6615340 -144168213 + (TG)n Simple_repeat Simple_repeat 1 61 0 231 283 22 36 chr11 6615375 6615513 -144168040 - L1ME LINE L1 -510 5656 5521 224 341 135 0 chr11 6616311 6616437 -144167116 + L2 LINE L2 1358 1500 -1814 639 133 0 0 chr11 6616442 6616583 -144166970 + AluSg/x SINE Alu 194 334 0 723 312 84 37 chr11 6616585 6617095 -144166458 + L2 LINE L2 1705 2238 -1076 1192 107 0 18 chr11 6617126 6617284 -144166269 + AluSq SINE Alu 129 288 -25 224 30 30 0 chr11 6617284 6617317 -144166236 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 3742 185 19 28 chr11 6617318 6618200 -144165353 + L1MA9 LINE L1 5439 6312 0 736 259 38 46 chr11 6619383 6619730 -144163823 - L1MD3 LINE L1 0 7995 7652 557 284 24 47 chr11 6620236 6620447 -144163106 + L3 LINE CR1 765 970 -607 279 354 71 0 chr11 6621702 6621829 -144161724 - L2 LINE L2 0 3272 3137 426 331 41 6 chr11 6623801 6623973 -144159580 - MIR SINE MIR -26 236 59 191 284 178 58 chr11 6625220 6625428 -144158125 + L2 LINE L2 2620 2852 -462 469 261 127 13 chr11 6627657 6627814 -144155739 + MIR SINE MIR 73 247 -15 8023 161 24 8 chr11 6628155 6629471 -144154082 - MSTA-int LTR MaLR -221 1430 89 2725 95 92 5 chr11 6629471 6629883 -144153670 + LTR7 LTR ERV1 1 448 -2 8023 161 24 8 chr11 6629883 6629974 -144153579 - MSTA-int LTR MaLR -1562 89 1 1905 161 39 14 chr11 6629974 6630329 -144153224 - MSTA LTR MaLR 0 428 65 1681 132 68 37 chr11 6630341 6630666 -144152887 - LTR10A LTR ERV1 -61 548 214 273 253 126 0 chr11 6630688 6630775 -144152778 - LTR10A LTR ERV1 -511 98 1 432 149 0 0 chr11 6630777 6630844 -144152709 - MSTA LTR MaLR -361 67 1 554 292 116 4 chr11 6631670 6631903 -144151650 - MIR SINE MIR 0 262 4 1442 195 47 30 chr11 6632214 6632327 -144151226 + AluJo SINE Alu 2 112 -200 387 0 0 0 chr11 6632327 6632370 -144151183 + (CA)n Simple_repeat Simple_repeat 2 44 0 1442 195 47 30 chr11 6632370 6632553 -144151000 + AluJo SINE Alu 112 303 -9 11503 223 38 30 chr11 6633911 6635620 -144147933 - L1PA16 LINE L1 0 6223 4528 333 82 0 0 chr11 6635620 6635669 -144147884 + (TG)n Simple_repeat Simple_repeat 2 50 0 11503 223 38 30 chr11 6635669 6637636 -144145917 - L1PA16 LINE L1 -1695 4528 2577 2393 89 0 13 chr11 6637636 6637949 -144145604 - AluSg1 SINE Alu 0 309 1 11503 223 38 30 chr11 6637949 6638058 -144145495 - L1PA16 LINE L1 -3646 2577 2470 909 183 0 0 chr11 6638058 6638227 -144145326 + ALR/Alpha Satellite centromeric 3 171 0 11503 223 38 30 chr11 6638227 6638782 -144144771 - L1PA16 LINE L1 -3753 2470 1921 387 0 0 0 chr11 6638782 6638825 -144144728 + (TA)n Simple_repeat Simple_repeat 1 43 0 2552 42 3 16 chr11 6638825 6639136 -144144417 - AluY SINE Alu -4 307 1 11503 223 38 30 chr11 6639136 6640442 -144143111 - L1PA16 LINE L1 -4301 1922 363 419 299 58 48 chr11 6640562 6640873 -144142680 - L1PA16 LINE L1 -5838 366 53 658 424 44 18 chr11 6641082 6641584 -144141969 - L1M2 LINE L1 -6320 529 15 603 214 13 7 chr11 6641603 6641757 -144141796 - ERVL LTR ERVL -1739 4025 3871 614 178 0 0 chr11 6641774 6641892 -144141661 + L1ME1 LINE L1 5813 5930 -236 886 283 84 27 chr11 6642045 6642786 -144140767 - L1PBb LINE L1 -4965 1883 1008 429 296 58 48 chr11 6642906 6643217 -144140336 - L1PBb LINE L1 -5838 1011 698 658 424 44 18 chr11 6643426 6643928 -144139625 - L1PBb LINE L1 -6320 529 15 603 214 13 7 chr11 6643947 6644101 -144139452 - ERVL LTR ERVL -1739 4025 3871 1006 226 4 4 chr11 6644118 6644357 -144139196 + L1ME1 LINE L1 5813 6051 -115 1985 105 25 11 chr11 6644363 6644648 -144138905 + AluSg SINE Alu 1 289 -21 4655 11 0 0 chr11 6644787 6645311 -144138242 + L1PA3 LINE L1 5628 6151 -4 216 0 0 0 chr11 6645346 6645370 -144138183 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 852 209 31 5 chr11 6645375 6645566 -144137987 + THE1C LTR MaLR 180 375 0 258 388 53 24 chr11 6645576 6645782 -144137771 + L2 LINE L2 2765 2976 -338 6277 26 3 1 chr11 6648827 6649567 -144133986 - L1PA4 LINE L1 -3 6152 5412 1419 324 53 19 chr11 6650001 6650637 -144132916 + L2 LINE L2 2184 2841 -473 193 250 100 33 chr11 6650676 6650736 -144132817 - MER5B DNA MER1_type 0 178 115 354 333 58 39 chr11 6650739 6650946 -144132607 + L1ME LINE L1 139 349 -5856 268 271 88 0 chr11 6651768 6651938 -144131615 + L1M3d LINE L1 1025 1209 -4682 347 231 0 33 chr11 6652151 6652242 -144131311 + L1ME LINE L1 1532 1619 -4777 * 652 246 11 29 chr11 6652220 6652395 -144131158 + L1MEc LINE L1 36 207 -6189 3204 269 61 32 chr11 6652399 6653750 -144129803 + L1MEc LINE L1 353 1751 -4645 2111 121 0 10 chr11 6653750 6654048 -144129505 + AluSx SINE Alu 1 295 -17 3204 269 61 32 chr11 6654048 6654150 -144129403 + L1MEc LINE L1 1751 1849 -4547 248 226 0 0 chr11 6654162 6654266 -144129287 + L1MEc LINE L1 2463 2627 -3588 351 0 0 0 chr11 6654274 6654313 -144129240 + (CA)n Simple_repeat Simple_repeat 2 40 0 6703 59 9 22 chr11 6654315 6655260 -144128293 - L1PA7 LINE L1 -21 6133 5201 5420 101 33 12 chr11 6655260 6656070 -144127483 + L1PA15 LINE L1 5337 6163 -2 521 303 76 32 chr11 6656471 6656656 -144126897 + LTR33 LTR ERVL 18 210 -311 321 237 51 85 chr11 6656712 6656830 -144126723 + LTR33 LTR ERVL 304 417 -104 462 226 8 15 chr11 6657441 6657574 -144125979 - L1MA7 LINE L1 -4 6287 6156 289 191 29 52 chr11 6657610 6657746 -144125807 - Charlie5 DNA MER1_type -126 2486 2354 2178 149 32 5 chr11 6657746 6658122 -144125431 - L1PA16 LINE L1 0 6166 5781 473 103 16 159 chr11 6658128 6658254 -144125299 - MER50 LTR ERV1 -130 604 497 1659 194 51 15 chr11 6660325 6660737 -144122816 - Charlie4a DNA MER1_type -33 475 49 1321 198 15 10 chr11 6661671 6662023 -144121530 + L1MB8 LINE L1 5118 5470 -714 2320 188 42 21 chr11 6662027 6662211 -144121342 + L1MB8 LINE L1 5610 5789 -389 1797 180 0 0 chr11 6662211 6662526 -144121027 + AluSx SINE Alu 1 315 0 2320 188 42 21 chr11 6662526 6662868 -144120685 + L1MB8 LINE L1 5789 6148 -30 415 263 22 118 chr11 6663218 6663446 -144120107 - L1ME LINE L1 -339 5782 5577 274 219 27 41 chr11 6663780 6663853 -144119700 - L2 LINE L2 -8 3305 3234 221 356 0 0 chr11 6663897 6663970 -144119583 + L2 LINE L2 3237 3309 -4 204 209 0 0 chr11 6664545 6664588 -144118965 + (CA)n Simple_repeat Simple_repeat 2 44 0 194 367 75 17 chr11 6664673 6664793 -144118760 + L2 LINE L2 3137 3263 -9 419 251 94 6 chr11 6666848 6667019 -144116534 - L1MC4 LINE L1 0 8042 7857 * 1071 263 67 25 chr11 6667017 6667596 -144115957 + L1ME3A LINE L1 5261 5889 -281 277 273 82 49 chr11 6667580 6668030 -144115523 + L1ME3 LINE L1 4754 5232 -914 * 282 334 77 15 chr11 6668058 6668382 -144115171 + L1ME3 LINE L1 5254 5591 -574 399 295 71 22 chr11 6668536 6668719 -144114834 + L1ME3 LINE L1 5752 5943 -219 563 296 70 50 chr11 6669498 6669915 -144113638 + L1ME LINE L1 5310 5738 -383 1978 158 103 8 chr11 6669915 6670302 -144113251 - MSTB LTR MaLR -2 424 1 563 296 70 50 chr11 6670302 6670326 -144113227 + L1ME LINE L1 5738 5760 -361 3237 142 45 6 chr11 6670637 6671144 -144112409 - MER1A DNA MER1_type 0 527 1 42240 39 3 0 chr11 6671389 6676532 -144107021 + L1P LINE L1 1 5161 -985 192 77 0 0 chr11 6676724 6676750 -144106803 + (CA)n Simple_repeat Simple_repeat 2 27 0 231 254 28 14 chr11 6676759 6676830 -144106723 - L1ME LINE L1 -204 5986 5915 489 283 81 12 chr11 6676962 6677135 -144106418 - MIR SINE MIR -73 189 5 530 286 83 43 chr11 6677135 6677652 -144105901 - L1ME LINE L1 -312 5878 5341 384 320 73 77 chr11 6677850 6678425 -144105128 - L1ME LINE L1 -1016 5199 4627 338 287 81 46 chr11 6678425 6678599 -144104954 + MER5A DNA MER1_type 7 186 -3 664 302 116 67 chr11 6678608 6678761 -144104792 - L1ME LINE L1 -1586 4629 4485 1907 140 32 0 chr11 6678761 6679040 -144104513 - AluSg SINE Alu -22 288 1 664 302 116 67 chr11 6679040 6679630 -144103923 - L1ME LINE L1 -1730 4485 3850 2022 234 123 31 chr11 6679819 6680560 -144102993 - L1MEc LINE L1 -3193 3022 2227 2347 86 0 19 chr11 6680560 6680875 -144102678 - AluY SINE Alu -2 309 1 2022 234 123 31 chr11 6680875 6681099 -144102454 - L1MEc LINE L1 -3988 2227 2025 659 300 106 29 chr11 6681237 6681614 -144101939 - L1MEc LINE L1 -5936 460 55 323 214 0 67 chr11 6681742 6681831 -144101722 - L1ME4a LINE L1 -71 6050 5968 874 171 0 0 chr11 6682027 6682173 -144101380 + FRAM SINE Alu 30 175 -1 271 205 39 26 chr11 6682505 6682583 -144100970 - L1ME4a LINE L1 -495 5626 5548 512 290 54 27 chr11 6682651 6682837 -144100716 + MIR SINE MIR 72 262 0 311 222 20 46 chr11 6682876 6683060 -144100493 - L1ME4a LINE L1 -897 5405 5256 737 173 167 0 chr11 6683061 6683223 -144100330 - L1P LINE L1 -1947 4199 4011 4258 149 15 8 chr11 6683224 6683948 -144099605 + L1PA16 LINE L1 5438 6166 0 28 29 0 0 chr11 6684570 6684605 -144098948 + AT_rich Low_complexity Low_complexity 1 35 0 457 393 85 22 chr11 6686256 6686704 -144096849 - L3 LINE CR1 -5 1572 1097 693 237 78 41 chr11 6687519 6687738 -144095815 + L2 LINE L2 600 826 -2488 374 246 53 18 chr11 6687738 6687852 -144095701 + MLT1G LTR MaLR 473 590 0 330 75 94 19 chr11 6688023 6688076 -144095477 - LTR67 LTR ERVL -1 556 500 245 279 99 70 chr11 6688109 6688281 -144095272 - LTR67 LTR ERVL -134 423 247 1856 178 43 0 chr11 6688300 6688648 -144094905 + L1MC3 LINE L1 7227 7589 -196 1197 139 21 72 chr11 6688674 6688911 -144094642 + AluJb SINE Alu 84 308 -4 417 30 45 15 chr11 6688924 6688991 -144094562 + (GAAA)n Simple_repeat Simple_repeat 4 72 0 576 178 36 115 chr11 6688992 6689245 -144094308 + L1MC3 LINE L1 7553 7785 0 490 306 60 50 chr11 6689421 6689819 -144093734 + L2 LINE L2 1957 2358 -956 5194 168 93 59 chr11 6692952 6693525 -144090028 - L1MC3 LINE L1 -35 7750 7198 250 163 0 0 chr11 6693525 6693568 -144089985 - MLT1F1 LTR MaLR -478 89 47 5194 168 93 59 chr11 6693568 6694227 -144089326 - L1MC3 LINE L1 -587 7198 6432 387 292 158 15 chr11 6694390 6694592 -144088961 - MIR SINE MIR -13 249 19 850 234 73 5 chr11 6694610 6694815 -144088738 - MER20 DNA MER1_type 0 219 1 250 307 49 86 chr11 6696439 6696602 -144086951 - L2 LINE L2 -473 2841 2685 999 193 104 0 chr11 6696614 6696816 -144086737 + MER58A DNA MER1_type 1 223 -1 2471 42 0 26 chr11 6697204 6697511 -144086042 + AluY SINE Alu 1 299 -12 474 188 30 0 chr11 6697516 6697617 -144085936 + L1MC5 LINE L1 7331 7434 -527 1048 247 113 43 chr11 6698083 6698553 -144085000 - MLT1D LTR MaLR 0 505 3 1575 231 130 47 chr11 6698680 6699255 -144084298 + L1MB5 LINE L1 347 969 -5573 5479 203 105 22 chr11 6699258 6702611 -144080942 + L1MB5 LINE L1 2965 6660 -12 263 354 89 53 chr11 6702624 6703017 -144080536 - L2 LINE L2 -2288 1026 620 185 217 87 0 chr11 6703087 6703133 -144080420 + L2 LINE L2 3223 3272 0 1561 166 10 41 chr11 6703655 6703950 -144079603 + AluJo SINE Alu 14 299 -13 1528 199 3 17 chr11 6704006 6704307 -144079246 - AluJo SINE Alu -12 300 4 296 333 97 14 chr11 6705043 6705187 -144078366 + MER5B DNA MER1_type 1 156 -22 462 278 159 30 chr11 6706054 6706324 -144077229 - L2 LINE L2 -4 3309 3005 597 168 95 89 chr11 6707552 6707694 -144075859 + MIR SINE MIR 71 216 -46 2216 52 0 4 chr11 6707694 6707962 -144075591 + AluY SINE Alu 1 267 -44 597 168 95 89 chr11 6707962 6707998 -144075555 + MIR SINE MIR 216 250 -12 515 161 0 11 chr11 6708126 6708213 -144075340 - FLAM_A SINE Alu -15 127 42 385 216 123 56 chr11 6708518 6708680 -144074873 - L1ME4a LINE L1 -224 5897 5725 467 267 50 6 chr11 6708684 6708864 -144074689 - L1ME4a LINE L1 -450 5671 5484 1136 336 149 22 chr11 6708971 6710113 -144073440 + L2 LINE L2 1608 2894 -420 236 250 14 56 chr11 6710125 6710197 -144073356 - L2 LINE L2 -11 3302 3234 300 354 95 55 chr11 6710216 6710541 -144073012 + L2 LINE L2 2885 3222 -50 1165 201 94 0 chr11 6711025 6711269 -144072284 + AluJo SINE Alu 46 312 0 1036 279 136 9 chr11 6711382 6711844 -144071709 - MLT1G1 LTR MaLR -2 593 73 330 276 39 31 chr11 6711872 6711999 -144071554 - MLT1G1-int LTR MaLR -1 1370 1243 212 206 111 0 chr11 6712244 6712307 -144071246 - L2 LINE L2 -944 2370 2301 22 0 0 0 chr11 6712433 6712455 -144071098 + AT_rich Low_complexity Low_complexity 1 22 0 43854 40 7 1 chr11 6712455 6718582 -144064971 - L1PA3 LINE L1 -3 6152 7 21 0 0 0 chr11 6718589 6718610 -144064943 + AT_rich Low_complexity Low_complexity 1 21 0 2860 169 74 11 chr11 6720876 6721444 -144062109 + MER6A DNA MER2_type 2 605 0 2093 166 62 31 chr11 6722265 6722793 -144060760 - MLT2A2 LTR ERVL 0 554 1 191 219 55 55 chr11 6723018 6723091 -144060462 - L2 LINE L2 -469 2845 2773 205 167 0 30 chr11 6723639 6723705 -144059848 + (TA)n Simple_repeat Simple_repeat 2 65 0 308 244 37 52 chr11 6723841 6723976 -144059577 + L1ME LINE L1 5473 5605 -516 255 341 0 0 chr11 6724976 6725064 -144058489 - ERVL LTR ERVL -4845 919 832 280 207 61 24 chr11 6725118 6725200 -144058353 - ERVL LTR ERVL -5062 702 618 593 270 105 40 chr11 6725705 6726131 -144057422 - LTR33 LTR ERVL -8 513 3 663 204 85 11 chr11 6726341 6726517 -144057036 + MER5A DNA MER1_type 1 189 0 1515 208 98 106 chr11 6726827 6727516 -144056037 - L1MC4 LINE L1 -749 5397 5435 350 277 122 27 chr11 6727516 6727704 -144055849 - MER63A DNA MER1_type -3 207 2 1515 208 98 106 chr11 6727704 6728049 -144055504 - L1MC4 LINE L1 -710 5436 5090 1363 212 80 24 chr11 6728051 6728513 -144055040 - L1MC4 LINE L1 -1087 5059 4572 721 245 97 7 chr11 6729187 6729477 -144054076 - L1MC4 LINE L1 -1563 4583 4268 2863 127 27 43 chr11 6729929 6730442 -144053111 - LTR10B LTR ERV1 0 505 1 532 195 55 28 chr11 6730462 6730614 -144052939 + MER21B LTR ERV1 614 754 -109 310 241 69 23 chr11 6730660 6730747 -144052806 - MER77 LTR ERV1 -4 601 526 3288 163 96 33 chr11 6730747 6731056 -144052497 - LTR62 LTR ERVK -2 717 429 2383 121 32 69 chr11 6731056 6731560 -144051993 - LTR19A LTR ERV1 -1 485 1 3288 163 96 33 chr11 6731560 6731924 -144051629 - LTR62 LTR ERVK -290 429 1 1574 231 39 89 chr11 6731924 6732430 -144051123 - MER21B LTR ERV1 -368 495 15 2660 186 24 20 chr11 6732695 6733234 -144050319 - MER21B-int LTR ERV1 -55 4136 3596 2148 88 77 64 chr11 6733334 6733745 -144049808 + LTR14B LTR ERVK 1 608 0 309 282 24 24 chr11 6733788 6733958 -144049595 + L1ME3A LINE L1 3776 3945 -2201 620 266 108 22 chr11 6734221 6734544 -144049009 + L1ME3A LINE L1 5618 5968 -202 986 126 0 0 chr11 6734679 6734822 -144048731 + FLAM_C SINE Alu 1 143 0 475 171 34 0 chr11 6734829 6734917 -144048636 + AluSg/x SINE Alu 201 291 -18 684 76 0 0 chr11 6735084 6735176 -144048377 - AluY SINE Alu -10 301 210 2012 122 3 11 chr11 6735290 6735605 -144047948 + AluSx SINE Alu 1 313 0 238 236 103 94 chr11 6735855 6736058 -144047495 + L1 LINE L1 4765 4969 -1177 513 322 90 25 chr11 6736112 6736357 -144047196 - MIR SINE MIR 0 262 2 305 306 45 37 chr11 6737060 6737194 -144046359 + L1ME4a LINE L1 5297 5431 -690 1670 127 0 12 chr11 6737484 6737743 -144045810 + AluSx SINE Alu 40 295 -17 369 224 121 0 chr11 6737749 6737865 -144045688 + L1ME4a LINE L1 5767 5896 -225 266 314 0 0 chr11 6738043 6738113 -144045440 - L2 LINE L2 0 3313 3244 227 329 0 0 chr11 6738169 6738254 -144045299 + (TA)n Simple_repeat Simple_repeat 2 86 0 2358 98 0 0 chr11 6738657 6738962 -144044591 - AluSx SINE Alu -6 306 2 835 242 106 3 chr11 6739731 6740062 -144043491 - L1M4 LINE L1 -1571 4575 4211 1045 228 189 30 chr11 6740097 6740383 -144043170 - L1M4 LINE L1 -2437 3709 3470 2012 133 88 14 chr11 6740383 6740736 -144042817 + L1PA15 LINE L1 5787 6165 0 1045 228 189 30 chr11 6740736 6741011 -144042542 - L1M4 LINE L1 -2676 3470 3059 6634 64 26 1 chr11 6741041 6742688 -144040865 - L1PA7 LINE L1 0 6154 4482 1884 168 0 0 chr11 6742818 6743109 -144040444 + AluJb SINE Alu 3 293 -19 2104 115 3 3 chr11 6744017 6744313 -144039240 - AluSq SINE Alu -17 296 1 1193 255 97 28 chr11 6744327 6744938 -144038615 + L1MC5 LINE L1 7261 7913 -48 592 292 58 45 chr11 6745021 6745418 -144038135 + MLT1J1 LTR MaLR 43 444 -2 291 242 30 0 chr11 6745427 6745493 -144038060 + L2 LINE L2 3188 3255 -17 308 266 125 23 chr11 6745649 6745777 -144037776 + L2 LINE L2 3170 3310 -3 22 35 0 0 chr11 6746366 6746395 -144037158 + AT_rich Low_complexity Low_complexity 1 29 0 790 200 69 23 chr11 6746419 6746594 -144036959 - MER58A DNA MER1_type -15 209 27 12854 39 6 1 chr11 6747141 6749484 -144034069 - L1PA5 LINE L1 -4 6150 3791 6456 97 52 0 chr11 6749484 6750455 -144033098 - L1MA1 LINE L1 -4 6298 5271 825 214 124 19 chr11 6751038 6751292 -144032261 - MLT1D LTR MaLR -2 503 199 441 147 27 0 chr11 6751296 6751371 -144032182 + MLT1B LTR MaLR 1 77 -313 1298 168 96 40 chr11 6751371 6751621 -144031932 + Tigger7 DNA MER2_type 1 264 -2223 577 177 0 10 chr11 6751626 6751722 -144031831 + Tigger7 DNA MER2_type 2392 2486 -1 * 1393 183 46 3 chr11 6751722 6752003 -144031550 + MLT1B LTR MaLR 75 367 -23 820 201 22 22 chr11 6752001 6752180 -144031373 - MSTD LTR MaLR -217 179 1 * 1048 196 43 33 chr11 6752384 6752660 -144030893 + L1ME2 LINE L1 5738 6016 -148 730 214 0 0 chr11 6752865 6752996 -144030557 + FLAM_C SINE Alu 1 131 -2 250 265 15 0 chr11 6753364 6753432 -144030121 + LTR50 LTR ERVL 1 69 -726 312 293 42 60 chr11 6753462 6753629 -144029924 + L1MC4 LINE L1 6912 7075 -967 27 29 0 0 chr11 6753932 6753966 -144029587 + AT_rich Low_complexity Low_complexity 1 34 0 21 0 0 0 chr11 6754033 6754054 -144029499 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr11 6754128 6754163 -144029390 + AT_rich Low_complexity Low_complexity 1 35 0 31 26 0 0 chr11 6754486 6754524 -144029029 + AT_rich Low_complexity Low_complexity 1 38 0 7712 22 2 0 chr11 6754836 6756447 -144027106 - L1PA3 LINE L1 -2 6153 4541 10960 29 0 0 chr11 6756447 6757779 -144025774 + L1P LINE L1 2453 3784 -2362 527 341 39 45 chr11 6758009 6758338 -144025215 + L1ME LINE L1 5254 5560 -561 2207 108 3 3 chr11 6758338 6758634 -144024919 - AluSq SINE Alu -17 296 1 527 341 39 45 chr11 6758634 6758807 -144024746 + L1ME LINE L1 5560 5733 -388 8175 181 33 17 chr11 6759090 6761768 -144021785 + L1PA16 LINE L1 3456 6166 0 228 139 0 0 chr11 6763049 6763085 -144020468 + MER92B LTR ERV1 1 36 -600 2244 92 20 0 chr11 6763105 6763400 -144020153 + AluSg SINE Alu 5 305 -5 355 92 154 0 chr11 6763404 6763469 -144020084 - MADE1 DNA Mariner 0 80 6 320 169 0 0 chr11 6763512 6763571 -144019982 + MER92B LTR ERV1 431 489 -147 1375 286 73 24 chr11 6763579 6763985 -144019568 + ERVL LTR ERVL 3282 3718 -2046 2739 136 38 17 chr11 6763985 6764462 -144019091 + LTR45B LTR ERV1 3 489 0 1375 286 73 24 chr11 6764462 6764551 -144019002 + ERVL LTR ERVL 3718 3801 -1963 186 189 0 0 chr11 6764970 6765007 -144018546 + (CA)n Simple_repeat Simple_repeat 2 38 0 442 242 134 46 chr11 6766120 6766508 -144017045 + MLT1H LTR MaLR 26 495 -54 2889 185 33 2 chr11 6767011 6767551 -144016002 + MER41D LTR ERV1 1 557 0 625 253 102 32 chr11 6767554 6767898 -144015655 - HAL1 LINE L1 -87 2420 2053 2561 170 26 65 chr11 6767938 6768519 -144015034 - MER82 DNA MER2_type 0 653 96 192 279 72 27 chr11 6768532 6768643 -144014910 + MIR SINE MIR 106 221 -41 328 284 34 68 chr11 6768709 6768885 -144014668 - MIR3 SINE MIR -29 179 10 183 216 0 0 chr11 6769275 6769312 -144014241 - MIR SINE MIR -223 39 3 199 292 92 77 chr11 6769326 6769456 -144014097 + L2 LINE L2 2941 3072 -200 1063 268 180 7 chr11 6769760 6770176 -144013377 + L2 LINE L2 2528 3012 -301 404 298 88 6 chr11 6770275 6770446 -144013107 - L1ME LINE L1 -460 5661 5477 641 139 101 32 chr11 6771904 6772062 -144011491 + MER53 DNA DNA 3 171 -18 227 224 0 35 chr11 6772175 6772233 -144011320 - HAL1b LINE L1 -628 720 665 364 277 116 37 chr11 6772246 6772500 -144011053 - HAL1b LINE L1 -750 1652 345 235 245 98 37 chr11 6772534 6772697 -144010856 - HAL1 LINE L1 -1183 1324 1152 230 175 0 18 chr11 6775927 6775984 -144007569 + (TTCA)n Simple_repeat Simple_repeat 2 57 0 292 207 49 0 chr11 6776544 6776626 -144006927 + MLT1H LTR MaLR 464 549 0 260 256 64 48 chr11 6777291 6777416 -144006137 - MIR SINE MIR -48 214 88 263 339 70 0 chr11 6777690 6777805 -144005748 - MIR SINE MIR -62 200 78 39 80 0 0 chr11 6778094 6778182 -144005371 + AT_rich Low_complexity Low_complexity 1 88 0 22 56 0 0 chr11 6778316 6778352 -144005201 + AT_rich Low_complexity Low_complexity 1 36 0 307 286 47 23 chr11 6778572 6778647 -144004906 - L1MC4a LINE L1 -1913 5895 5823 2402 194 83 21 chr11 6778647 6779179 -144004374 + MLT1F1 LTR MaLR 1 565 -2 307 286 47 23 chr11 6779179 6779274 -144004279 - L1MC4a LINE L1 -1985 5823 5721 812 226 18 128 chr11 6779950 6780495 -144003058 - L1MC5 LINE L1 -738 7223 6739 45 0 0 0 chr11 6781528 6781573 -144001980 + AT_rich Low_complexity Low_complexity 1 45 0 740 293 98 53 chr11 6781589 6782365 -144001188 + L1M4 LINE L1 2199 2939 -3207 1765 174 0 3 chr11 6782365 6782667 -144000886 + AluJb SINE Alu 1 301 0 6696 174 21 6 chr11 6782673 6784796 -143998757 + L1PA15 LINE L1 4015 6159 -6 740 293 98 53 chr11 6784796 6786028 -143997525 + L1M4 LINE L1 2943 4304 -1842 319 265 46 71 chr11 6786357 6786640 -143996913 + L1P LINE L1 4759 5034 -1112 1209 272 96 38 chr11 6787033 6787532 -143996021 - MLT1F LTR MaLR -10 532 52 267 255 50 93 chr11 6787759 6787878 -143995675 + MIR SINE MIR 33 147 -61 471 288 126 28 chr11 6789283 6789498 -143994055 + MIR SINE MIR 7 242 -20 363 276 138 8 chr11 6790142 6790265 -143993288 - L1PA15-16 LINE L1 -5567 1282 1144 27 62 0 0 chr11 6790971 6791019 -143992534 + AT_rich Low_complexity Low_complexity 1 48 0 72 96 0 0 chr11 6791116 6791335 -143992218 + AT_rich Low_complexity Low_complexity 1 219 0 208 187 41 0 chr11 6791335 6791458 -143992095 + (TA)n Simple_repeat Simple_repeat 1 128 0 1958 169 82 17 chr11 6791512 6791914 -143991639 - MSTA LTR MaLR 0 428 1 252 246 88 18 chr11 6791938 6792052 -143991501 + L1MEc LINE L1 1551 1672 -5049 516 325 93 58 chr11 6792751 6793148 -143990405 + HAL1 LINE L1 1124 1534 -973 319 310 36 7 chr11 6793335 6793538 -143990015 + L1MEc LINE L1 2430 2636 -3904 4675 33 0 0 chr11 6793971 6794862 -143988691 + L1PA3 LINE L1 5070 6155 0 421 164 277 66 chr11 6794863 6795119 -143988434 + L2 LINE L2 1405 1714 -1600 1201 198 50 4 chr11 6795127 6795365 -143988188 - MLT1A1 LTR MaLR 0 365 117 3031 248 85 58 chr11 6795465 6796625 -143986928 + L2 LINE L2 1723 2914 -400 978 281 82 54 chr11 6798215 6798603 -143984950 + L2 LINE L2 2894 3292 -21 680 289 105 14 chr11 6800720 6801186 -143982367 - L1ME3A LINE L1 -35 6127 5594 450 192 104 63 chr11 6801221 6801411 -143982142 - L1MD3 LINE L1 -61 7934 7520 228 200 50 0 chr11 6801442 6801502 -143982051 - L1ME3A LINE L1 -564 5606 5544 2957 188 102 24 chr11 6801613 6802362 -143981191 - L1MC3 LINE L1 -273 7512 6706 1786 130 7 40 chr11 6802873 6803010 -143980543 + AluSx SINE Alu 1 141 -171 279 0 0 0 chr11 6803010 6803041 -143980512 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1786 130 7 40 chr11 6803041 6803203 -143980350 + AluSx SINE Alu 141 290 -22 914 214 24 29 chr11 6803245 6803455 -143980098 + MER20 DNA MER1_type 7 215 -4 258 250 158 0 chr11 6803819 6803939 -143979614 + MIR SINE MIR 69 207 -55 289 268 134 0 chr11 6804443 6804525 -143979028 - MIR SINE MIR -58 204 112 * 406 333 159 17 chr11 6804523 6804932 -143978621 - L2 LINE L2 -1381 1933 1467 226 350 50 0 chr11 6805335 6805415 -143978138 + MIR SINE MIR 20 103 -159 185 333 133 54 chr11 6805426 6805924 -143977629 - L2 LINE L2 -2238 1076 540 306 322 82 12 chr11 6806034 6806205 -143977348 - MIR SINE MIR -21 241 59 195 42 0 0 chr11 6807228 6807252 -143976301 + (TA)n Simple_repeat Simple_repeat 1 24 0 1756 144 35 75 chr11 6808082 6808429 -143975124 + MER1B DNA MER1_type 1 333 -6 292 229 0 0 chr11 6808965 6809026 -143974527 - L1M4 LINE L1 -1363 4783 4723 253 235 0 0 chr11 6809210 6809261 -143974292 - L1ME4a LINE L1 -87 6034 5984 199 307 67 0 chr11 6809439 6809514 -143974039 - L2 LINE L2 0 3272 3193 31 0 0 0 chr11 6810088 6810119 -143973434 + AT_rich Low_complexity Low_complexity 1 31 0 523 278 62 46 chr11 6811946 6812187 -143971366 - LTR16A LTR ERVL -189 261 17 462 312 88 6 chr11 6812749 6812919 -143970634 - MIR SINE MIR 0 262 79 247 265 103 0 chr11 6813360 6813428 -143970125 + L2 LINE L2 3149 3223 -49 187 79 53 0 chr11 6813606 6813644 -143969909 + (TA)n Simple_repeat Simple_repeat 1 40 0 536 319 58 9 chr11 6813662 6813888 -143969665 - MIR SINE MIR -20 242 6 316 313 10 30 chr11 6814034 6814133 -143969420 - MIR SINE MIR -115 147 51 233 380 78 7 chr11 6814163 6814305 -143969248 - L3 LINE CR1 -234 1343 1192 2273 82 0 23 chr11 6816919 6817224 -143966329 - AluSc SINE Alu -11 298 1 2062 123 7 10 chr11 6817654 6817955 -143965598 + AluSx SINE Alu 1 300 -12 36 53 0 0 chr11 6818681 6818738 -143964815 + AT_rich Low_complexity Low_complexity 1 57 0 6636 127 20 14 chr11 6818897 6820374 -143963179 - L1MA3 LINE L1 0 6305 4823 548 43 0 0 chr11 6821933 6822002 -143961551 + L1M1 LINE L1 5723 5791 -514 320 338 94 57 chr11 6823826 6824054 -143959499 - MIR SINE MIR -2 260 23 326 318 141 5 chr11 6824109 6824307 -143959246 - L1ME LINE L1 -453 5668 5444 33 73 0 0 chr11 6824405 6824473 -143959080 + AT_rich Low_complexity Low_complexity 1 68 0 21 0 0 0 chr11 6828045 6828066 -143955487 + AT_rich Low_complexity Low_complexity 1 21 0 1479 191 146 45 chr11 6828417 6828836 -143954717 - LTR40c LTR ERVL 0 465 5 3937 236 67 40 chr11 6828840 6829929 -143953624 - HERVL40 LTR ERVL 0 5530 4413 592 296 109 49 chr11 6830066 6830895 -143952658 - L1ME LINE L1 -1221 4925 4041 7743 130 43 5 chr11 6830949 6832778 -143950775 - L1PA6 LINE L1 0 6154 4255 1175 276 140 23 chr11 6832782 6833781 -143949772 - L1ME LINE L1 -2280 3866 2751 1231 206 39 31 chr11 6833850 6834136 -143949417 - AluJo SINE Alu -22 290 3 308 300 93 0 chr11 6834216 6834356 -143949197 - L1ME LINE L1 -3576 2570 2418 2222 120 0 0 chr11 6834811 6835111 -143948442 - AluSx SINE Alu -12 300 1 781 265 57 33 chr11 6835802 6836047 -143947506 + MIR SINE MIR 1 251 -11 207 167 0 0 chr11 6836827 6836863 -143946690 + (CATA)n Simple_repeat Simple_repeat 2 37 0 479 361 17 11 chr11 6837194 6837374 -143946179 + MER5A DNA MER1_type 8 188 -1 1199 221 32 4 chr11 6837553 6837806 -143945747 - MLT1H1 LTR MaLR 0 555 296 1731 252 143 26 chr11 6837821 6838435 -143945118 - MER50 LTR ERV1 -23 711 26 379 278 87 17 chr11 6838435 6838550 -143945003 - MER50 LTR ERV1 -611 123 1 456 303 98 15 chr11 6838581 6838783 -143944770 - MLT1H1 LTR MaLR -348 219 1 3348 209 58 24 chr11 6838890 6839642 -143943911 - MER21B LTR ERV1 -62 801 24 3155 146 49 12 chr11 6840157 6840727 -143942826 - LTR59 LTR ERV1 -6 591 1 245 294 65 0 chr11 6840882 6840974 -143942579 + L1 LINE L1 3852 3949 -2197 613 203 115 0 chr11 6841598 6841746 -143941807 + MER96B DNA MER1_type? 253 417 0 363 285 124 0 chr11 6841813 6841999 -143941554 - L1M4 LINE L1 -2938 3208 3000 551 289 93 50 chr11 6841999 6842363 -143941190 + L2 LINE L2 2934 3313 0 2150 131 73 14 chr11 6843028 6843372 -143940181 - THE1B LTR MaLR 0 364 1 1182 102 71 31 chr11 6843384 6843609 -143939944 + L1MB2 LINE L1 5938 6171 0 196 148 33 33 chr11 6843609 6843644 -143939909 + (TTAAA)n Simple_repeat Simple_repeat 2 39 -23 2474 84 0 0 chr11 6843644 6843955 -143939598 + AluY SINE Alu 1 311 0 196 148 33 33 chr11 6843955 6843980 -143939573 + (TTAAA)n Simple_repeat Simple_repeat 38 62 0 1397 94 11 0 chr11 6843995 6844176 -143939377 + AluSq SINE Alu 1 183 -130 1682 161 42 7 chr11 6844282 6844568 -143938985 - AluJo SINE Alu -16 296 1 723 199 27 120 chr11 6844571 6844717 -143938836 - L1ME2 LINE L1 -152 6012 5909 2330 98 10 0 chr11 6844717 6845022 -143938531 - AluSx SINE Alu -4 308 1 723 199 27 120 chr11 6845022 6845205 -143938348 - L1ME2 LINE L1 -255 5909 5710 314 240 104 48 chr11 6896808 6896933 -143886620 + HAL1 LINE L1 1 132 -2375 1455 150 29 60 chr11 6897414 6897496 -143886057 - MLT1F1 LTR MaLR 0 595 512 2397 93 3 0 chr11 6897496 6897806 -143885747 - AluSp SINE Alu -2 311 1 1455 150 29 60 chr11 6897806 6898006 -143885547 - MLT1F1 LTR MaLR -83 512 294 416 270 18 49 chr11 6898270 6898433 -143885120 - Charlie8 DNA MER1_type -2201 216 59 332 339 48 16 chr11 6898477 6898601 -143884952 + HAL1 LINE L1 754 881 -1626 80 63 0 0 chr11 6899079 6899222 -143884331 + AT_rich Low_complexity Low_complexity 1 143 0 328 164 60 0 chr11 6899752 6899819 -143883734 + MIR SINE MIR 24 94 -168 229 355 21 0 chr11 6900887 6901076 -143882477 - L1M4 LINE L1 -3549 2597 2405 312 286 9 0 chr11 6901087 6901199 -143882354 + L1ME3A LINE L1 5802 5914 -250 309 266 29 86 chr11 6901277 6901416 -143882137 + L1ME3A LINE L1 5963 6093 -77 538 275 68 68 chr11 6901808 6902059 -143881494 - MIR SINE MIR 0 262 12 189 0 0 0 chr11 6902467 6902488 -143881065 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 214 203 0 109 chr11 6902674 6902738 -143880815 + L2 LINE L2 3255 3311 -2 575 190 78 0 chr11 6902949 6903065 -143880488 + MLT2B1 LTR ERVL 2 126 -394 915 258 154 20 chr11 6903344 6903642 -143879911 + MLT2B1 LTR ERVL 129 466 -54 238 50 50 0 chr11 6903731 6903771 -143879782 + (TA)n Simple_repeat Simple_repeat 2 43 0 315 0 0 0 chr11 6903774 6903809 -143879744 + (CA)n Simple_repeat Simple_repeat 2 36 0 1599 163 8 127 chr11 6903820 6904213 -143879340 + MER7A DNA MER2_type 1 344 -2 386 61 0 0 chr11 6904223 6904272 -143879281 + MLT2B1 LTR ERVL 472 520 0 242 319 52 43 chr11 6905012 6905128 -143878425 - L2 LINE L2 -6 3266 3150 1116 286 79 44 chr11 6905446 6905604 -143877949 - L2 LINE L2 0 3313 3162 353 32 63 0 chr11 6905604 6905667 -143877886 + (TA)n Simple_repeat Simple_repeat 2 68 0 1116 286 79 44 chr11 6905667 6906248 -143877305 - L2 LINE L2 -151 3162 2472 6132 96 4 30 chr11 6907878 6908808 -143874745 - L1P LINE L1 -3504 2642 1737 * 10599 77 11 1 chr11 6908804 6910709 -143872844 + L1P3 LINE L1 3899 5819 -335 423 217 275 7 chr11 6911742 6911880 -143871673 + MER5A DNA MER1_type 9 183 -6 297 0 0 0 chr11 6911966 6911999 -143871554 + (TA)n Simple_repeat Simple_repeat 1 33 0 592 374 65 39 chr11 6912313 6912620 -143870933 + L2 LINE L2 2013 2311 -1003 1499 230 19 17 chr11 6912620 6912981 -143870572 + MLT1A1 LTR MaLR 2 363 -2 592 374 65 39 chr11 6912981 6913400 -143870153 + L2 LINE L2 2311 2758 -556 5073 217 65 41 chr11 6913937 6914076 -143869477 + L1MC4 LINE L1 6490 6624 -1418 201 39 0 0 chr11 6914076 6914102 -143869451 + (CA)n Simple_repeat Simple_repeat 2 27 0 5073 217 65 41 chr11 6914102 6915478 -143868075 + L1MC4 LINE L1 6624 8041 -1 664 296 79 38 chr11 6915612 6915852 -143867701 + MIR SINE MIR 3 252 -10 552 288 64 38 chr11 6916461 6916697 -143866856 + MIR SINE MIR 1 242 -20 28 71 0 0 chr11 6916826 6916882 -143866671 + AT_rich Low_complexity Low_complexity 1 56 0 988 173 9 33 chr11 6916935 6917149 -143866404 - L1MD1 LINE L1 -248 6388 6180 1945 145 3 0 chr11 6917258 6917561 -143865992 - AluSx SINE Alu -8 304 1 8512 210 64 40 chr11 6917562 6921440 -143862113 - L1MD1 LINE L1 -455 6181 2399 414 0 0 0 chr11 6921440 6921486 -143862067 + (TA)n Simple_repeat Simple_repeat 1 46 0 8582 38 0 20 chr11 6921487 6923343 -143860210 - L1PA5 LINE L1 -7 6147 4313 8512 210 64 40 chr11 6923343 6924126 -143859427 - L1MD1 LINE L1 -4236 2400 1391 22 56 0 0 chr11 6924728 6924764 -143858789 + AT_rich Low_complexity Low_complexity 1 36 0 2139 116 3 17 chr11 6925316 6925617 -143857936 + AluSx SINE Alu 1 297 -15 207 318 118 0 chr11 6925775 6925860 -143857693 + L2 LINE L2 2764 2858 -456 450 367 91 39 chr11 6926103 6926668 -143856885 - L2 LINE L2 -213 3059 2469 229 323 16 0 chr11 6926814 6926876 -143856677 + L2 LINE L2 3186 3248 -24 280 206 16 63 chr11 6927590 6927653 -143855900 + MLT1F LTR MaLR 1 60 -482 1762 180 0 3 chr11 6927670 6927953 -143855600 - AluJo SINE Alu -30 282 1 560 294 0 12 chr11 6927956 6928119 -143855434 + MLT1F LTR MaLR 49 209 -333 1130 65 13 0 chr11 6928222 6928375 -143855178 + L1PA7 LINE L1 5929 6083 -71 1001 176 38 0 chr11 6928415 6928625 -143854928 - L1MD3 LINE L1 -1 7994 7777 506 269 59 0 chr11 6929164 6929283 -143854270 - MER5A DNA MER1_type -62 127 2 431 235 18 71 chr11 6929284 6929454 -143854099 - L1MC5 LINE L1 -876 7085 6925 * 771 255 0 59 chr11 6929450 6929689 -143853864 - L1MC4 LINE L1 -866 7002 6718 614 297 76 10 chr11 6929931 6930234 -143853319 - L1ME4a LINE L1 -269 5852 5530 2460 37 0 10 chr11 6930782 6931076 -143852477 - AluY SINE Alu -20 291 1 665 310 162 18 chr11 6931289 6931676 -143851877 + L2 LINE L2 2687 3127 -186 402 298 121 24 chr11 6931811 6931935 -143851618 + L2 LINE L2 3177 3312 -1 443 215 75 0 chr11 6932070 6932177 -143851376 - MIR SINE MIR -50 212 98 527 231 52 29 chr11 6933117 6933290 -143850263 + L2 LINE L2 2173 2349 -965 508 270 166 43 chr11 6933285 6933563 -143849990 - L2 LINE L2 0 3313 3002 * 433 308 160 0 chr11 6933927 6934083 -143849470 - MER5A DNA MER1_type 0 189 9 270 291 100 18 chr11 6934334 6934444 -143849109 - MIR SINE MIR -108 154 36 187 352 110 11 chr11 6934795 6934886 -143848667 + L2 LINE L2 3169 3268 -4 2086 115 3 0 chr11 6935112 6935399 -143848154 - AluSg SINE Alu -22 288 1 318 306 58 16 chr11 6935489 6935610 -143847943 + MIR SINE MIR 76 201 -61 685 265 85 36 chr11 6936456 6936864 -143846689 + MLT1H LTR MaLR 13 549 0 2607 55 0 0 chr11 6937571 6937878 -143845675 + AluY SINE Alu 1 307 -4 180 0 0 0 chr11 6937878 6937898 -143845655 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 274 376 11 0 chr11 6938548 6938641 -143844912 + LTR67 LTR ERVL 97 190 -367 289 164 36 0 chr11 6938912 6938967 -143844586 + LTR33A LTR ERVL 444 500 -23 201 226 32 0 chr11 6939356 6939418 -143844135 + (TA)n Simple_repeat Simple_repeat 2 65 0 7956 169 53 51 chr11 6940014 6941828 -143841725 + L1MC3 LINE L1 5968 7785 0 1458 64 0 16 chr11 6941974 6942185 -143841368 + AluSq SINE Alu 112 313 0 838 217 87 129 chr11 6942185 6943087 -143840466 + L1MC5 LINE L1 7049 7912 -49 348 218 0 0 chr11 6943120 6943207 -143840346 + (TA)n Simple_repeat Simple_repeat 1 87 0 1434 249 78 11 chr11 6943214 6943588 -143839965 - LTR16A LTR ERVL 0 450 52 1812 169 60 69 chr11 6944761 6945231 -143838322 - MER31B LTR ERV1 0 661 1 584 316 65 71 chr11 6945505 6945954 -143837599 + L2 LINE L2 2827 3272 0 21 0 0 31 chr11 6946768 6946779 -143836774 + AT_rich Low_complexity Low_complexity 1 11 -20 2072 58 11 0 chr11 6946779 6947053 -143836500 - L1PA8 LINE L1 -10 6162 5886 21 0 0 31 chr11 6947053 6947073 -143836480 + AT_rich Low_complexity Low_complexity 11 31 0 892 315 86 47 chr11 6947099 6947890 -143835663 - HAL1 LINE L1 -1590 917 96 1514 256 71 86 chr11 6947984 6948300 -143835253 - L1MC4 LINE L1 0 8042 7723 2414 88 0 7 chr11 6948300 6948606 -143834947 + AluSg SINE Alu 3 306 -4 1514 256 71 86 chr11 6948606 6949201 -143834352 - L1MC4 LINE L1 -319 7723 7120 4879 91 13 4 chr11 6949201 6949891 -143833662 - L1PA16 LINE L1 -11 6155 5460 1514 256 71 86 chr11 6949891 6951194 -143832359 - L1MC4 LINE L1 -922 7120 5846 2070 114 17 3 chr11 6951194 6951470 -143832083 + AluSx SINE Alu 1 283 -29 226 0 0 0 chr11 6951470 6951495 -143832058 + (CAAA)n Simple_repeat Simple_repeat 1 132 0 2070 114 17 3 chr11 6951495 6951508 -143832045 + AluSx SINE Alu 283 294 -18 1514 256 71 86 chr11 6951508 6951790 -143831763 - L1MC4 LINE L1 -2196 5846 5561 4657 51 20 3 chr11 6951878 6952466 -143831087 + L1PA7 LINE L1 5556 6153 -1 1480 226 86 47 chr11 6954375 6954861 -143828692 + L1M1 LINE L1 12 516 -7049 * 5131 31 0 6 chr11 6954826 6955461 -143828092 - L1PA3 LINE L1 -3279 2867 2237 21276 26 9 0 chr11 6955461 6958764 -143824789 + L1PA3 LINE L1 2841 6152 -3 337 154 0 0 chr11 6958778 6958843 -143824710 + L1PA5 LINE L1 6084 6148 -6 17745 148 34 12 chr11 6958870 6961824 -143821729 + L1M1 LINE L1 502 3521 -4044 2128 85 0 22 chr11 6961836 6962154 -143821399 + L1MA1 LINE L1 5888 6198 -104 22 0 0 0 chr11 6963384 6963406 -143820147 + AT_rich Low_complexity Low_complexity 1 22 0 1350 153 138 89 chr11 6963551 6963725 -143819828 - Charlie1b DNA MER1_type -2238 523 359 4463 136 20 8 chr11 6963725 6964491 -143819062 - L1MA5 LINE L1 -2 6298 5524 1350 153 138 89 chr11 6964491 6964766 -143818787 - Charlie1b DNA MER1_type -2402 359 52 212 336 143 0 chr11 6964852 6964971 -143818582 + MIR SINE MIR 127 262 0 30 34 0 34 chr11 6965612 6965648 -143817905 + AT_rich Low_complexity Low_complexity 1 36 -21 2874 0 0 0 chr11 6965648 6965955 -143817598 - AluY SINE Alu -4 307 1 30 34 0 34 chr11 6965955 6965977 -143817576 + AT_rich Low_complexity Low_complexity 36 57 0 2185 106 61 35 chr11 6965977 6966354 -143817199 - L1PA16 LINE L1 -6 6160 5774 2100 109 12 34 chr11 6966448 6966768 -143816785 + AluSq SINE Alu 1 313 0 278 250 42 65 chr11 6966901 6967069 -143816484 + L1MEc LINE L1 1399 1562 -4834 22 35 0 0 chr11 6967594 6967623 -143815930 + AT_rich Low_complexity Low_complexity 1 29 0 2210 118 6 13 chr11 6967842 6968156 -143815397 + AluSx SINE Alu 1 312 0 1356 191 93 17 chr11 6968170 6968515 -143815038 + L1M4 LINE L1 4101 4471 -1675 * 1518 227 41 49 chr11 6968500 6969032 -143814521 + L1M4 LINE L1 4747 5274 -872 341 343 7 7 chr11 6969146 6969292 -143814261 + L1M4 LINE L1 4557 4702 -1444 21 0 0 0 chr11 6969423 6969444 -143814109 + AT_rich Low_complexity Low_complexity 1 21 0 3989 164 44 16 chr11 6969820 6970267 -143813286 - L1MA9 LINE L1 -59 6253 5771 2065 112 0 26 chr11 6970267 6970570 -143812983 - AluSx SINE Alu -17 295 1 3989 164 44 16 chr11 6970570 6970937 -143812616 - L1MA9 LINE L1 -541 5771 5416 5141 70 14 0 chr11 6971123 6971790 -143811763 + L1PA8 LINE L1 5488 6163 -9 1189 274 34 62 chr11 6972436 6972966 -143810587 + MER69 DNA AcHobo 697 1211 -1315 1092 202 56 50 chr11 6972969 6973150 -143810403 + MER69 DNA AcHobo 2128 2307 -219 1376 163 48 0 chr11 6973150 6973402 -143810151 + L1PA16 LINE L1 5893 6156 -10 1092 202 56 50 chr11 6973402 6973616 -143809937 + MER69 DNA AcHobo 2307 2525 -1 262 339 51 0 chr11 6974460 6974578 -143808975 - L3 LINE CR1 -17 1560 1437 361 272 120 13 chr11 6974682 6974840 -143808713 + L1M4 LINE L1 4922 5096 -1050 453 337 32 40 chr11 6974857 6975109 -143808444 - MIR SINE MIR -6 256 7 261 239 113 7 chr11 6975112 6975254 -143808299 + L1M4 LINE L1 5104 5260 -886 374 378 54 14 chr11 6975358 6975580 -143807973 + L2 LINE L2 2868 3098 -215 549 264 147 78 chr11 6975834 6976270 -143807283 + MLT1J LTR MaLR 9 474 -37 569 297 109 32 chr11 6976467 6976878 -143806675 - L1ME LINE L1 -367 5797 5355 21 36 0 0 chr11 6976895 6976923 -143806630 + AT_rich Low_complexity Low_complexity 1 28 0 22 56 0 0 chr11 6977074 6977110 -143806443 + AT_rich Low_complexity Low_complexity 1 36 0 487 288 161 35 chr11 6977335 6977758 -143805795 + L1MC4 LINE L1 4226 4701 -1445 22 0 0 0 chr11 6977813 6977835 -143805718 + AT_rich Low_complexity Low_complexity 1 22 0 455 291 200 15 chr11 6978259 6978734 -143804819 + L1MC4 LINE L1 5255 5817 -1991 2145 132 0 0 chr11 6979033 6979328 -143804225 - AluSx SINE Alu -15 297 3 1671 240 52 75 chr11 6979442 6980074 -143803479 - L1ME3A LINE L1 -9 6161 5547 1881 164 106 13 chr11 6980074 6980453 -143803100 + MLT2D LTR ERVL 1 414 0 1671 240 52 75 chr11 6980453 6980553 -143803000 - L1ME3A LINE L1 -623 5547 5446 447 286 117 34 chr11 6980583 6981110 -143802443 - L1M3 LINE L1 -329 5839 5255 582 311 53 19 chr11 6981166 6981372 -143802181 + MIR SINE MIR 2 214 -48 389 326 117 25 chr11 6981412 6981814 -143801739 - L1M3 LINE L1 -941 5205 4767 301 279 0 0 chr11 6982130 6982191 -143801362 + MER91B DNA MER1_type 1 61 -129 517 277 32 0 chr11 6982479 6982634 -143800919 + MLT1J1 LTR MaLR 1 160 -286 407 234 28 19 chr11 6982670 6982777 -143800776 + MER21B LTR ERV1 1 108 -755 1237 204 29 32 chr11 6982877 6983156 -143800397 + MER21B LTR ERV1 475 752 -111 495 285 140 10 chr11 6983184 6983384 -143800169 + MLT1J2 LTR MaLR 196 421 -29 241 405 72 27 chr11 6983885 6984258 -143799295 + L2 LINE L2 2850 3239 -33 188 271 0 0 chr11 6984399 6984447 -143799106 + L2 LINE L2 3263 3310 -3 747 245 164 2 chr11 6984899 6985334 -143798219 + L1MC4 LINE L1 6468 7072 -970 1066 278 16 0 chr11 6985336 6985649 -143797904 + L1MC4 LINE L1 7239 7556 -486 1797 140 52 3 chr11 6985649 6985935 -143797618 - AluJb SINE Alu -12 300 1 21 57 0 0 chr11 6986455 6986490 -143797063 + AT_rich Low_complexity Low_complexity 1 35 0 526 12 60 0 chr11 6987278 6987361 -143796192 + (TA)n Simple_repeat Simple_repeat 2 89 0 183 42 0 0 chr11 6988112 6988136 -143795417 + (CA)n Simple_repeat Simple_repeat 1 24 0 393 260 122 8 chr11 6988907 6989030 -143794523 + MIR SINE MIR 53 189 -73 3827 271 97 36 chr11 6989036 6990667 -143792886 - L2 LINE L2 0 3313 1551 783 254 15 5 chr11 6990667 6990872 -143792681 - MER63A DNA MER1_type -3 207 1 3827 271 97 36 chr11 6990872 6990985 -143792568 - L2 LINE L2 -1762 1551 1446 25 75 0 0 chr11 6991282 6991335 -143792218 + AT_rich Low_complexity Low_complexity 1 53 0 398 323 124 33 chr11 6991535 6992136 -143791417 + L2 LINE L2 1921 2665 -649 444 280 35 30 chr11 6992192 6992392 -143791161 + L1ME4a LINE L1 5635 5835 -286 350 254 88 18 chr11 6993464 6993578 -143789975 + L2 LINE L2 3151 3272 0 330 270 204 26 chr11 6993888 6994040 -143789513 + L2 LINE L2 2236 2414 -900 623 272 94 6 chr11 6994274 6994324 -143789229 - MIR SINE MIR -1 261 217 184 59 59 0 chr11 6994324 6994358 -143789195 + (TA)n Simple_repeat Simple_repeat 1 36 0 623 272 94 6 chr11 6994358 6994487 -143789066 - MIR SINE MIR -45 217 66 522 325 101 18 chr11 6994721 6995282 -143788271 - HAL1b LINE L1 -682 1686 361 698 365 100 9 chr11 6996531 6997092 -143786461 - L2 LINE L2 -338 2976 2365 920 346 64 10 chr11 6997914 6998322 -143785231 + LTR16A LTR ERVL 16 445 -5 29 28 0 0 chr11 6998849 6998885 -143784668 + AT_rich Low_complexity Low_complexity 1 36 0 344 270 92 46 chr11 7001268 7001442 -143782111 + MLT1K LTR MaLR 174 355 -233 507 194 0 43 chr11 7001548 7001734 -143781819 + GA-rich Low_complexity Low_complexity 1 178 0 182 130 39 26 chr11 7002705 7002782 -143780771 + (TTATA)n Simple_repeat Simple_repeat 3 80 0 487 341 59 15 chr11 7002809 7003217 -143780336 - L1ME LINE L1 -475 5687 5262 1569 92 8 0 chr11 7003299 7003538 -143780015 - L1MA5 LINE L1 -2 6298 6058 2423 45 0 3 chr11 7003607 7003899 -143779654 - AluY SINE Alu -20 291 1 184 298 85 0 chr11 7004269 7004316 -143779237 + L2 LINE L2 3168 3218 -54 667 62 21 0 chr11 7004669 7004766 -143778787 + AluY SINE Alu 213 311 0 300 313 45 18 chr11 7005101 7005213 -143778340 + L2 LINE L2 3152 3266 -6 32 57 0 0 chr11 7005275 7005328 -143778225 + AT_rich Low_complexity Low_complexity 1 53 0 985 145 0 13 chr11 7005703 7005862 -143777691 - FRAM SINE Alu -9 167 11 1427 328 76 57 chr11 7006040 7007740 -143775813 - L1ME LINE L1 -722 5442 3699 319 302 24 40 chr11 7007839 7007965 -143775588 + L2 LINE L2 3190 3313 0 451 354 62 11 chr11 7008105 7008379 -143775174 - HAL1b LINE L1 -759 589 302 1637 264 16 75 chr11 7009403 7010033 -143773520 + MLT1E LTR MaLR 1 593 0 213 39 0 0 chr11 7010392 7010418 -143773135 + (T)n Simple_repeat Simple_repeat 1 26 0 6530 16 10 1 chr11 7010454 7011250 -143772303 - L1HS LINE L1 0 6155 5353 349 23 0 0 chr11 7011247 7011290 -143772263 + L1P LINE L1 1945 1987 -4159 * 876 238 63 0 chr11 7011762 7011968 -143771585 + MIR SINE MIR 1 219 -43 207 0 0 0 chr11 7012505 7012528 -143771025 + (CAAAAA)n Simple_repeat Simple_repeat 1 23 0 231 315 94 31 chr11 7013157 7013284 -143770269 - L2 LINE L2 -2 3270 3136 180 0 0 0 chr11 7014043 7014063 -143769490 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 637 292 31 122 chr11 7014251 7015017 -143768536 - L2 LINE L2 -1 3312 2616 227 229 38 84 chr11 7015215 7015346 -143768207 + LTR67 LTR ERVL 6 130 -427 * 1679 239 69 58 chr11 7015290 7015810 -143767743 + MLT1F LTR MaLR 7 532 -10 391 334 89 38 chr11 7015846 7016160 -143767393 + LTR67 LTR ERVL 117 446 -111 264 255 28 9 chr11 7016239 7016345 -143767208 - MLT1L LTR MaLR -16 599 492 586 296 11 0 chr11 7016468 7016647 -143766906 - MLT1L LTR MaLR -345 270 90 1036 309 146 6 chr11 7016726 7017247 -143766306 - L2 LINE L2 -683 2631 2038 189 0 0 0 chr11 7017481 7017502 -143766051 + (CAAAAA)n Simple_repeat Simple_repeat 4 24 0 324 48 0 0 chr11 7018288 7018330 -143765223 + (CA)n Simple_repeat Simple_repeat 2 43 0 552 309 41 37 chr11 7018950 7019196 -143764357 + MIR SINE MIR 5 251 -11 709 261 77 18 chr11 7019416 7019638 -143763915 + MIR SINE MIR 14 248 -14 1973 142 3 0 chr11 7019845 7020151 -143763402 + AluSq SINE Alu 1 307 0 243 246 0 33 chr11 7020534 7020595 -143762958 + CT-rich Low_complexity Low_complexity 3 61 0 354 294 55 0 chr11 7021664 7021773 -143761780 + L3 LINE CR1 272 386 -1191 310 359 41 7 chr11 7022019 7022164 -143761389 + L3 LINE CR1 1067 1216 -361 431 253 116 50 chr11 7022179 7022420 -143761133 + MIR SINE MIR 2 258 -4 237 163 0 0 chr11 7022483 7022532 -143761021 + T-rich Low_complexity Low_complexity 1 49 0 1131 210 213 9 chr11 7022627 7022956 -143760597 - MSTD LTR MaLR 0 396 1 221 348 0 14 chr11 7023651 7023720 -143759833 + MIR SINE MIR 20 87 -175 459 252 122 22 chr11 7023722 7023944 -143759609 - MLT1H LTR MaLR 0 555 312 1030 196 14 9 chr11 7023958 7024177 -143759376 - MLT1A2 LTR MaLR 0 374 155 2457 122 3 0 chr11 7024186 7024555 -143758998 - L1PB1 LINE L1 -1 6150 5781 309 183 0 0 chr11 7024555 7024615 -143758938 + (TA)n Simple_repeat Simple_repeat 2 61 0 324 283 0 22 chr11 7024615 7024707 -143758846 + L1MC4 LINE L1 6614 6703 -1339 * 327 311 0 0 chr11 7024627 7024717 -143758836 - L1MC4 LINE L1 -1339 6703 6614 276 149 0 0 chr11 7024724 7024771 -143758782 + (TA)n Simple_repeat Simple_repeat 2 48 0 3613 131 6 4 chr11 7024771 7025675 -143757878 - L1P5 LINE L1 -360 5791 4888 2191 191 0 0 chr11 7025675 7026131 -143757422 + L1P5 LINE L1 4403 4858 -1288 517 164 207 7 chr11 7026136 7026276 -143757277 - MLT1A2 LTR MaLR -218 156 1 698 256 57 9 chr11 7026357 7026568 -143756985 - MLT1H LTR MaLR -326 223 3 288 293 50 0 chr11 7026571 7026670 -143756883 + MIR SINE MIR 86 189 -73 404 280 96 0 chr11 7026725 7026882 -143756671 - MIR SINE MIR -3 259 88 263 418 7 7 chr11 7027301 7027442 -143756111 + L2 LINE L2 2509 2649 -665 186 122 41 20 chr11 7027966 7028015 -143755538 + GA-rich Low_complexity Low_complexity 3 52 0 385 240 34 75 chr11 7028034 7028180 -143755373 + MIR SINE MIR 82 221 -41 306 0 0 0 chr11 7028180 7028214 -143755339 + (CA)n Simple_repeat Simple_repeat 2 35 0 243 169 68 34 chr11 7028265 7028324 -143755229 + L3 LINE CR1 1514 1574 -3 406 296 152 73 chr11 7028931 7029798 -143753755 - L1M2 LINE L1 -5538 1311 550 1852 243 109 46 chr11 7032280 7032906 -143750647 - L2 LINE L2 -339 2975 2311 408 342 32 11 chr11 7033020 7033207 -143750346 - L3 LINE CR1 -176 1401 1211 416 222 193 22 chr11 7033372 7033507 -143750046 + MER5A DNA MER1_type 29 186 -3 258 279 51 13 chr11 7033524 7033603 -143749950 - MIR SINE MIR -70 138 57 * 560 316 113 42 chr11 7033598 7034011 -143749542 - L3 LINE CR1 -588 989 547 563 162 19 195 chr11 7034011 7034221 -143749332 + MER5B DNA MER1_type 4 176 -2 334 224 241 9 chr11 7035667 7035783 -143747770 + MIR SINE MIR 2 144 -118 408 161 69 0 chr11 7035975 7036062 -143747491 + MIR SINE MIR 68 160 -102 606 154 173 0 chr11 7036076 7036232 -143747321 - MER53 DNA DNA -6 183 1 197 333 118 0 chr11 7036233 7036335 -143747218 + MIR SINE MIR 149 262 0 219 410 38 0 chr11 7037176 7037281 -143746272 - L2 LINE L2 -8 3264 3156 4373 273 66 29 chr11 7038459 7040124 -143743429 - L2 LINE L2 -2 3311 1586 213 271 0 17 chr11 7040165 7040224 -143743329 - L2 LINE L2 -1075 2239 2182 1873 157 68 6 chr11 7040224 7040562 -143742991 - MLT1A1 LTR MaLR 0 365 7 4279 244 136 21 chr11 7040569 7042073 -143741480 - L2 LINE L2 -1129 2185 510 381 293 126 18 chr11 7042186 7042408 -143741145 - L2 LINE L2 -826 2488 2243 270 377 66 0 chr11 7042465 7042571 -143740982 + MER5B DNA MER1_type 2 114 -64 389 309 50 53 chr11 7044646 7045025 -143738528 + L1 LINE L1 2970 3347 -2799 280 209 110 11 chr11 7045334 7045425 -143738128 - L1ME LINE L1 -477 5644 5545 281 219 14 17 chr11 7045448 7045536 -143738017 + L1 LINE L1 3604 3690 -2456 23 0 0 0 chr11 7045706 7045729 -143737824 + AT_rich Low_complexity Low_complexity 1 23 0 1726 216 43 11 chr11 7045808 7046252 -143737301 - L1MB8 LINE L1 -7 6171 5714 670 284 67 69 chr11 7046477 7046953 -143736600 - MLT1J LTR MaLR -31 480 6 25 0 0 0 chr11 7047265 7047290 -143736263 + AT_rich Low_complexity Low_complexity 1 25 0 390 21 0 0 chr11 7047909 7047956 -143735597 + (CA)n Simple_repeat Simple_repeat 2 48 0 28 29 0 0 chr11 7048242 7048277 -143735276 + AT_rich Low_complexity Low_complexity 1 35 0 2212 102 0 0 chr11 7048650 7048957 -143734596 - AluY SINE Alu 0 307 1 512 280 63 21 chr11 7049127 7049270 -143734283 + MIR SINE MIR 23 171 -91 203 361 0 15 chr11 7049401 7049531 -143734022 + CT-rich Low_complexity Low_complexity 4 131 0 703 291 60 98 chr11 7049614 7050095 -143733458 - L2 LINE L2 -4 3268 2806 204 156 22 0 chr11 7050405 7050450 -143733103 + (TTTG)n Simple_repeat Simple_repeat 3 48 0 2476 40 0 0 chr11 7050870 7051166 -143732387 + L1PA8 LINE L1 5874 6169 -3 2228 103 10 3 chr11 7051406 7051706 -143731847 - AluSx SINE Alu -10 302 1 568 317 204 24 chr11 7052299 7052876 -143730677 + L2 LINE L2 1709 2389 -925 490 209 243 46 chr11 7052849 7053112 -143730441 + L2 LINE L2 2932 3246 -67 * 507 353 55 36 chr11 7053208 7053571 -143729982 + L2 LINE L2 2417 2786 -528 311 313 139 72 chr11 7053670 7053854 -143729699 + L2 LINE L2 2918 3088 -184 2049 110 0 28 chr11 7053854 7054177 -143729376 + AluSg SINE Alu 1 315 0 311 313 139 72 chr11 7054177 7054323 -143729230 + L2 LINE L2 3088 3271 -1 2182 115 17 136 chr11 7055017 7055496 -143728057 - MSTC LTR MaLR -6 422 1 326 325 156 12 chr11 7056226 7056386 -143727167 + L3 LINE CR1 206 388 -1189 193 246 145 29 chr11 7056691 7056760 -143726793 - MER5A DNA MER1_type -67 122 46 * 325 323 0 11 chr11 7056701 7056794 -143726759 + MER5A DNA MER1_type 98 189 0 2591 203 44 32 chr11 7057142 7057818 -143725735 + MER63C DNA MER1_type 1 684 -246 763 197 19 110 chr11 7057896 7058160 -143725393 + MER63C DNA MER1_type 691 930 0 26 0 0 0 chr11 7059946 7059972 -143723581 + AT_rich Low_complexity Low_complexity 1 26 0 294 29 0 0 chr11 7059998 7060033 -143723520 + (CA)n Simple_repeat Simple_repeat 2 36 0 210 128 0 0 chr11 7060042 7060081 -143723472 + (GA)n Simple_repeat Simple_repeat 1 39 0 306 210 101 67 chr11 7060106 7060225 -143723328 - HAL1 LINE L1 -106 2401 2279 310 195 12 49 chr11 7060237 7060319 -143723234 - L1MC4 LINE L1 -1339 6703 6625 26 30 0 0 chr11 7060655 7060688 -143722865 + AT_rich Low_complexity Low_complexity 1 33 0 255 271 14 0 chr11 7060792 7060862 -143722691 + MIR SINE MIR 85 155 -107 776 271 121 16 chr11 7061424 7061877 -143721676 - HAL1 LINE L1 -761 1746 1246 2555 102 19 11 chr11 7062256 7062628 -143720925 - THE1C LTR MaLR 0 375 1 10050 114 52 5 chr11 7062628 7064136 -143719417 - THE1C-int LTR MaLR 0 1580 1 2537 87 11 8 chr11 7064141 7064510 -143719043 - THE1C LTR MaLR -5 370 1 1039 153 58 36 chr11 7066367 7066590 -143716963 + L1MB3 LINE L1 5949 6176 -7 779 303 25 8 chr11 7067925 7068362 -143715191 - LTR33 LTR ERVL 0 521 14 187 225 167 25 chr11 7069518 7069638 -143713915 - MIR3 SINE MIR -61 147 11 1150 175 0 11 chr11 7071043 7071362 -143712191 - MLT1A1 LTR MaLR 0 365 1 2302 173 23 17 chr11 7071362 7071830 -143711723 - MLT1A1-int LTR MaLR 0 1735 1214 3209 173 14 53 chr11 7072120 7072813 -143710740 - MLT1A1-int LTR MaLR -1069 666 1 244 282 167 0 chr11 7072931 7073009 -143710544 + L2 LINE L2 3201 3291 -22 301 355 161 0 chr11 7073238 7073393 -143710160 - MIR SINE MIR -77 185 6 183 205 0 0 chr11 7073631 7073670 -143709883 + CT-rich Low_complexity Low_complexity 4 42 0 226 122 0 0 chr11 7073689 7073738 -143709815 - L1MC1 LINE L1 -2 6331 6283 243 0 0 0 chr11 7074148 7074175 -143709378 + (TG)n Simple_repeat Simple_repeat 1 27 0 * 345 24 0 0 chr11 7074174 7074216 -143709337 + (GA)n Simple_repeat Simple_repeat 1 42 0 441 194 241 36 chr11 7074333 7074586 -143708967 - L1MC5 LINE L1 -32 7929 7625 894 244 148 46 chr11 7074650 7075367 -143708186 - HAL1 LINE L1 -628 1879 1090 594 196 98 25 chr11 7076542 7076705 -143706848 - MER91B DNA MER1_type -2 188 14 303 326 42 0 chr11 7076755 7076850 -143706703 - L2 LINE L2 -18 3254 3156 478 267 0 8 chr11 7077066 7077197 -143706356 - MER94 DNA DNA 0 134 5 236 324 0 0 chr11 7077455 7077523 -143706030 - MLT1I LTR MaLR -244 165 98 484 336 8 0 chr11 7078673 7078801 -143704752 + L2 LINE L2 3141 3269 -3 875 290 126 9 chr11 7079087 7079522 -143704031 + LTR16C LTR ERVL 1 486 -5 459 318 76 21 chr11 7080662 7080898 -143702655 - MIR SINE MIR 0 262 14 470 304 154 0 chr11 7081105 7081332 -143702221 + MIR SINE MIR 1 262 0 197 328 0 16 chr11 7083309 7083373 -143700180 - L3 LINE CR1 -3 1574 1512 741 319 57 15 chr11 7083616 7084020 -143699533 + L2 LINE L2 2862 3282 -31 2172 132 0 10 chr11 7087218 7087522 -143696031 - AluSx SINE Alu -11 301 1 2407 86 0 0 chr11 7087533 7087834 -143695719 - AluY SINE Alu -10 301 1 832 167 7 7 chr11 7088084 7088234 -143695319 + AluSp/q SINE Alu 161 310 -3 26 50 0 0 chr11 7089921 7089961 -143693592 + AT_rich Low_complexity Low_complexity 1 40 0 23 68 0 0 chr11 7093025 7093069 -143690484 + AT_rich Low_complexity Low_complexity 1 44 0 300 230 24 103 chr11 7093107 7093233 -143690320 - L1ME3 LINE L1 -93 6138 6023 401 277 115 49 chr11 7093390 7093841 -143689712 - L1ME3 LINE L1 -346 5885 5405 555 265 34 20 chr11 7093899 7094197 -143689356 - L1ME3 LINE L1 -884 5331 5030 1672 182 32 46 chr11 7094208 7094581 -143688972 - MLT1A2 LTR MaLR -6 368 1 557 262 89 52 chr11 7094685 7095166 -143688387 - L1ME3 LINE L1 -1315 4900 4402 2085 120 10 0 chr11 7095226 7095517 -143688036 - AluSq SINE Alu -19 294 1 616 275 27 8 chr11 7095637 7095895 -143687658 - L1ME3 LINE L1 -2259 3956 3694 291 62 0 0 chr11 7096063 7096146 -143687407 - Alu SINE Alu 0 336 254 268 233 31 70 chr11 7096201 7096330 -143687223 - L1ME3 LINE L1 -4738 1658 1535 309 349 120 5 chr11 7096677 7096869 -143686684 - L1ME3 LINE L1 -5840 365 152 311 384 90 35 chr11 7097191 7097480 -143686073 + L2 LINE L2 2967 3271 -1 1366 171 65 92 chr11 7098426 7098893 -143684660 - MER66A LTR ERV1 0 478 97 783 196 4 92 chr11 7098954 7099183 -143684370 + MER63A DNA MER1_type 1 209 -1 583 281 40 37 chr11 7099802 7100130 -143683423 - L1ME3A LINE L1 -221 5932 5604 1130 298 107 40 chr11 7100238 7100698 -143682855 - L1ME3A LINE L1 -1874 4255 3827 183 80 0 0 chr11 7100698 7100723 -143682830 + (TG)n Simple_repeat Simple_repeat 2 26 0 1130 298 107 40 chr11 7100723 7101754 -143681799 - L1ME3A LINE L1 -2302 3827 2664 11407 32 1 1 chr11 7102015 7103457 -143680096 - L1PA2 LINE L1 -1493 4653 3212 7915 8 0 4 chr11 7103457 7105015 -143678538 + L1PA2 LINE L1 4624 6155 0 551 290 123 29 chr11 7105041 7105382 -143678171 - L1ME3A LINE L1 -3998 2312 1940 628 273 90 17 chr11 7105891 7106272 -143677281 - L1MEd LINE L1 -4862 1257 908 1287 189 56 50 chr11 7106939 7107334 -143676219 + L1ME1 LINE L1 5644 6028 -138 186 396 36 0 chr11 7107496 7107607 -143675946 - L2 LINE L2 -1683 1631 1517 1849 94 0 0 chr11 7107608 7107841 -143675712 - AluSq SINE Alu -21 292 60 1255 100 6 0 chr11 7107841 7108001 -143675552 - AluSq SINE Alu -152 161 1 234 357 14 14 chr11 7108113 7108256 -143675297 + MER117 DNA MER1_type 2 144 -53 1350 143 0 63 chr11 7108398 7108636 -143674917 + AluJb SINE Alu 68 290 -22 1310 264 33 24 chr11 7108928 7109379 -143674174 - LTR16A1 LTR ERVL -2 455 1 589 307 126 69 chr11 7110686 7111269 -143672284 - L2 LINE L2 -6 3266 2656 2883 213 37 43 chr11 7111361 7112247 -143671306 - L1ME1 LINE L1 -4 6162 5282 * 18096 189 10 16 chr11 7112216 7117383 -143666170 - L1PA13 LINE L1 -5 7596 2471 2123 319 6 9 chr11 7117455 7118135 -143665418 - L1PA13 LINE L1 -5936 1645 968 2528 124 8 3 chr11 7118201 7118563 -143664990 + THE1B LTR MaLR 1 364 0 1929 164 40 11 chr11 7118707 7119061 -143664492 - THE1B LTR MaLR 0 364 1 11519 95 8 4 chr11 7119061 7120635 -143662918 - THE1B-int LTR MaLR 0 1580 1 2237 105 44 36 chr11 7120635 7120996 -143662557 - THE1B LTR MaLR 0 364 1 2474 209 63 37 chr11 7121128 7121834 -143661719 - L1M4 LINE L1 -803 5343 4610 306 0 0 0 chr11 7121834 7121868 -143661685 + (CA)n Simple_repeat Simple_repeat 2 35 0 2474 209 63 37 chr11 7121868 7122021 -143661532 - L1M4 LINE L1 -1536 4610 4462 1066 259 41 12 chr11 7122024 7122368 -143661185 - L1MEc LINE L1 -5999 397 44 1518 307 87 60 chr11 7122368 7123479 -143660074 - L2 LINE L2 -809 2505 1365 227 210 16 32 chr11 7123702 7123764 -143659789 - L1ME4a LINE L1 -82 6039 5979 2127 124 0 10 chr11 7124138 7124436 -143659117 - AluSq SINE Alu -18 295 1 261 0 0 0 chr11 7125590 7125619 -143657934 + (T)n Simple_repeat Simple_repeat 1 29 0 1072 129 72 5 chr11 7126084 7126277 -143657276 + L1MB4 LINE L1 5975 6180 0 237 33 0 0 chr11 7126280 7126310 -143657243 + (CA)n Simple_repeat Simple_repeat 2 31 0 405 285 136 56 chr11 7126560 7126774 -143656779 - MIR SINE MIR -29 233 3 282 167 15 30 chr11 7129774 7129840 -143653713 + Charlie7 DNA MER1_type 41 105 -2507 1822 230 127 44 chr11 7129962 7130670 -143652883 + LTR41 LTR ERVL 1 767 -6 382 147 100 73 chr11 7130680 7130830 -143652723 - Charlie7 DNA MER1_type -28 2584 2431 276 202 73 65 chr11 7130851 7130975 -143652578 - Charlie7 DNA MER1_type -1891 721 597 21 0 0 0 chr11 7131035 7131056 -143652497 + AT_rich Low_complexity Low_complexity 1 21 0 291 271 110 8 chr11 7131113 7131231 -143652322 + L2 LINE L2 2630 2759 -555 236 241 203 45 chr11 7131827 7131960 -143651593 + MIR SINE MIR 109 262 0 218 286 0 0 chr11 7132353 7132423 -143651130 + L2 LINE L2 2994 3063 -209 228 258 90 22 chr11 7132600 7132689 -143650864 - MIR3 SINE MIR -28 180 86 228 232 85 24 chr11 7132812 7132894 -143650659 + L2 LINE L2 3182 3268 -4 281 347 146 22 chr11 7133713 7133981 -143649572 - L2 LINE L2 0 3313 3013 271 367 31 56 chr11 7133994 7134190 -143649363 - L2 LINE L2 -458 2856 2666 341 295 37 29 chr11 7134611 7134855 -143648698 - L1MDa LINE L1 -1435 5105 4860 308 304 88 35 chr11 7134855 7135082 -143648471 - L2 LINE L2 -23 3290 3052 778 277 126 47 chr11 7135162 7135755 -143647798 - L1MDa LINE L1 -1776 4764 4066 8505 35 0 0 chr11 7135755 7137550 -143646003 - L1PA3 LINE L1 0 6155 4357 778 277 126 47 chr11 7137550 7137909 -143645644 - L1MDa LINE L1 -2474 4066 3737 435 314 61 10 chr11 7138157 7138565 -143644988 - L1MDa LINE L1 -3208 3332 2904 2008 139 33 0 chr11 7138986 7139335 -143644218 - AluSx SINE Alu 0 359 1 251 242 95 32 chr11 7139584 7139839 -143643714 - L1MDa LINE L1 -3827 2713 2446 252 0 0 0 chr11 7139850 7139878 -143643675 + (T)n Simple_repeat Simple_repeat 1 28 0 265 394 0 15 chr11 7140009 7140141 -143643412 + L2 LINE L2 2562 2691 -623 921 342 138 35 chr11 7140230 7141267 -143642286 - L2 LINE L2 -839 2475 1332 319 277 77 108 chr11 7141355 7141485 -143642068 - MIR SINE MIR -105 157 32 268 278 48 63 chr11 7142400 7142526 -143641027 + L2 LINE L2 3149 3272 0 308 306 7 35 chr11 7143207 7143351 -143640202 - L1ME4a LINE L1 -112 6009 5870 237 287 105 27 chr11 7143500 7143796 -143639757 - L1ME4a LINE L1 -320 5801 5483 21 0 0 0 chr11 7143808 7143829 -143639724 + AT_rich Low_complexity Low_complexity 1 21 0 2365 32 39 39 chr11 7143973 7144281 -143639272 - AluY SINE Alu -3 308 1 282 270 37 42 chr11 7144392 7144607 -143638946 - L1ME4a LINE L1 -2341 5467 5254 820 222 74 17 chr11 7144764 7144994 -143638559 - MIR SINE MIR -2 260 18 3861 56 4 0 chr11 7145260 7145746 -143637807 - L1PA8 LINE L1 -11 6161 5674 3660 82 15 6 chr11 7145753 7146610 -143636943 - L1P3 LINE L1 -368 5786 4920 381 22 0 0 chr11 7146679 7146725 -143636828 + (CA)n Simple_repeat Simple_repeat 1 46 0 1926 145 0 6 chr11 7146805 7147122 -143636431 - L1PB1 LINE L1 -3 6148 5834 761 232 46 12 chr11 7147285 7147526 -143636027 + L1MB7 LINE L1 5935 6183 -1 257 333 25 0 chr11 7147581 7147743 -143635810 + Tigger8 DNA MER2_type 290 455 -211 311 322 80 36 chr11 7147944 7148245 -143635308 - L1ME4a LINE L1 -1325 4821 4508 2559 186 111 43 chr11 7148416 7149202 -143634351 - L1ME2 LINE L1 -9 6155 5317 1057 240 5 0 chr11 7149223 7149431 -143634122 - AluJb SINE Alu -20 292 84 358 162 0 15 chr11 7149446 7149514 -143634039 - FLAM SINE Alu -10 123 57 361 273 96 20 chr11 7149844 7150093 -143633460 - L1ME2 LINE L1 -2191 3955 3688 317 194 14 0 chr11 7150555 7150627 -143632926 + MER116 DNA Mariner 2 74 -6 8298 79 6 0 chr11 7150824 7152733 -143630820 - L1PA7 LINE L1 0 6154 4236 876 256 176 36 chr11 7152733 7153124 -143630429 + L2 LINE L2 2867 3312 -1 494 157 12 11 chr11 7153151 7153309 -143630244 + CT-rich Low_complexity Low_complexity 1 158 0 241 323 65 0 chr11 7153710 7153803 -143629750 + MIR SINE MIR 18 116 -92 246 255 0 0 chr11 7154079 7154130 -143629423 - L2 LINE L2 -23 3290 3240 259 275 66 22 chr11 7154148 7154239 -143629314 - MIR SINE MIR -30 232 138 451 237 61 9 chr11 7154719 7154833 -143628720 + MIR SINE MIR 24 143 -119 191 325 24 0 chr11 7155212 7155295 -143628258 - L2 LINE L2 -527 2787 2703 284 355 107 25 chr11 7156429 7156626 -143626927 - L3 LINE CR1 -227 1350 1138 5568 84 24 16 chr11 7156670 7157489 -143626064 + L1MA1 LINE L1 5473 6298 -4 22 56 0 0 chr11 7157521 7157557 -143625996 + AT_rich Low_complexity Low_complexity 1 36 0 990 328 177 16 chr11 7157603 7158292 -143625261 - L3 LINE CR1 -550 1027 228 687 268 97 68 chr11 7159131 7159556 -143623997 - L2 LINE L2 -695 2619 2183 246 325 44 100 chr11 7160569 7160729 -143622824 - MIR SINE MIR -70 192 42 483 221 177 12 chr11 7160794 7160962 -143622591 - HAL1 LINE L1 -93 2414 2275 285 51 0 0 chr11 7160962 7161001 -143622552 + (CA)n Simple_repeat Simple_repeat 1 39 0 483 221 177 12 chr11 7161001 7161154 -143622399 - HAL1 LINE L1 -232 2275 2040 2000 260 70 55 chr11 7161154 7162208 -143621345 + L2 LINE L2 2241 3313 0 330 26 0 0 chr11 7162240 7162279 -143621274 + (TG)n Simple_repeat Simple_repeat 2 40 0 755 154 18 35 chr11 7162396 7162565 -143620988 + L1PA13 LINE L1 5995 6160 -3 1772 274 90 64 chr11 7162586 7163088 -143620465 - L1M4 LINE L1 -1302 4844 4357 7292 40 0 11 chr11 7163088 7164220 -143619333 + L1PA4 LINE L1 5033 6154 -1 1772 274 90 64 chr11 7164220 7165717 -143617836 - L1M4 LINE L1 -1789 4357 2793 653 225 46 0 chr11 7165919 7166070 -143617483 + MER77 LTR ERV1 1 158 -447 601 158 0 0 chr11 7166077 7166172 -143617381 + MER77 LTR ERV1 511 605 0 1825 123 40 7 chr11 7168035 7168336 -143615217 - L1PA6 LINE L1 -58 6096 5786 4359 169 42 28 chr11 7168811 7169612 -143613941 - L1PA16 LINE L1 -1 6165 5334 1571 185 0 50 chr11 7169612 7169915 -143613638 + AluJb SINE Alu 1 288 -24 4359 169 42 28 chr11 7169915 7170149 -143613404 - L1PA16 LINE L1 -832 5334 5105 10552 219 30 18 chr11 7170292 7172255 -143611298 - L1PA15-16 LINE L1 -869 5980 4042 4938 32 0 0 chr11 7172255 7172839 -143610714 - L1PA4 LINE L1 0 6155 5572 10552 219 30 18 chr11 7172839 7173316 -143610237 - L1PA15-16 LINE L1 -2807 4042 3572 1092 117 0 0 chr11 7173316 7173478 -143610075 - L1PB1 LINE L1 -2 6149 5988 10552 219 30 18 chr11 7173478 7174354 -143609199 - L1PA15-16 LINE L1 -3277 3572 2627 1677 224 91 83 chr11 7174374 7175110 -143608443 - L1ME1 LINE L1 -5 6230 5489 4461 257 84 27 chr11 7175125 7176697 -143606856 - L1ME1 LINE L1 -806 5409 3928 1873 78 0 4 chr11 7176697 7176929 -143606624 - AluY SINE Alu -5 306 76 4461 257 84 27 chr11 7176929 7176989 -143606564 - L1ME1 LINE L1 -2287 3928 3873 15456 137 29 33 chr11 7176989 7179730 -143603823 + Tigger4(Zombi) DNA MER2_type 1 2731 0 4461 257 84 27 chr11 7179730 7180440 -143603113 - L1ME1 LINE L1 -2342 3873 2909 1083 246 71 16 chr11 7180545 7181132 -143602421 - L1ME1 LINE L1 -3594 2621 2031 2152 228 49 72 chr11 7181134 7181396 -143602157 - L1MEc LINE L1 -3009 3206 2940 1828 157 35 7 chr11 7181396 7181682 -143601871 + AluJo SINE Alu 1 294 -18 2152 228 49 72 chr11 7181682 7182704 -143600849 - L1MEc LINE L1 -3275 2940 1970 319 286 11 0 chr11 7182777 7182868 -143600685 - MLT1K LTR MaLR -330 258 167 1032 186 83 10 chr11 7183315 7183519 -143600034 - MER20 DNA MER1_type 0 219 1 222 150 0 0 chr11 7183758 7183798 -143599755 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 352 180 90 60 chr11 7184048 7184148 -143599405 - L2 LINE L2 -17 3296 3194 12249 182 54 28 chr11 7184149 7184651 -143598902 - L1MA4A LINE L1 -7 6998 6510 297 0 0 0 chr11 7184651 7184684 -143598869 + (TA)n Simple_repeat Simple_repeat 2 34 0 12249 182 54 28 chr11 7184684 7185477 -143598076 - L1MA4A LINE L1 -495 6510 5739 2928 6 0 0 chr11 7185477 7185795 -143597758 - AluYb8 SINE Alu 0 318 1 12249 182 54 28 chr11 7185795 7186239 -143597314 - L1MA4A LINE L1 -1266 5739 5308 2218 89 7 0 chr11 7186239 7186543 -143597010 - AluSp SINE Alu 0 306 1 12249 182 54 28 chr11 7186543 7188971 -143594582 - L1MA4A LINE L1 -1697 5308 2944 2290 114 0 0 chr11 7188971 7189270 -143594283 - AluSq SINE Alu -14 299 1 12249 182 54 28 chr11 7189270 7191849 -143591704 - L1MA4A LINE L1 -4061 2944 43 741 211 0 0 chr11 7191879 7192012 -143591541 - FLAM_A SINE Alu 0 133 1 235 235 102 31 chr11 7192232 7192330 -143591223 + L2 LINE L2 3164 3268 -4 938 258 67 0 chr11 7194343 7194583 -143588970 + MIR SINE MIR 7 262 0 1524 191 86 3 chr11 7194590 7194905 -143588648 - MER2 DNA MER2_type 0 344 4 2218 116 3 0 chr11 7197730 7198024 -143585529 + AluSx SINE Alu 1 295 -17 207 0 0 0 chr11 7198501 7198524 -143585029 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 227 258 90 17 chr11 7199084 7199172 -143584381 + MIR SINE MIR 9 101 -107 534 367 25 108 chr11 7199174 7199722 -143583831 - MLT1J LTR MaLR -7 504 2 240 301 29 19 chr11 7199729 7199832 -143583721 + (CTCA)n Simple_repeat Simple_repeat 1 104 0 185 378 61 0 chr11 7199876 7199958 -143583595 - L2 LINE L2 -49 3223 3137 305 258 0 0 chr11 7201136 7201198 -143582355 + MLT1J2 LTR MaLR 389 450 0 584 308 94 26 chr11 7201529 7201763 -143581790 + MIR SINE MIR 9 258 -4 684 300 38 9 chr11 7405013 7405247 -143378306 + MIR SINE MIR 22 262 0 8065 22 0 1 chr11 7407768 7409320 -143374233 - L1PA3 LINE L1 -223 5932 4383 189 0 0 0 chr11 7410981 7411002 -143372551 + (CCTG)n Simple_repeat Simple_repeat 3 23 0 284 300 24 24 chr11 7411313 7411483 -143372070 + (CGAGG)n Simple_repeat Simple_repeat 5 174 0 1207 149 5 36 chr11 7413050 7413271 -143370282 - AluJo SINE Alu -98 214 1 1420 110 0 35 chr11 7413387 7413615 -143369938 - L1PA8A LINE L1 0 6131 5912 281 317 8 8 chr11 7414086 7414209 -143369344 + GA-rich Low_complexity Low_complexity 5 127 0 259 155 24 32 chr11 7414886 7415016 -143368537 + C-rich Low_complexity Low_complexity 1 128 0 449 298 137 6 chr11 7415821 7415982 -143367571 - MIR SINE MIR -35 227 46 1471 138 94 0 chr11 7416589 7416813 -143366740 + AluJo SINE Alu 11 255 -57 282 230 54 0 chr11 7416862 7416936 -143366617 + MIR SINE MIR 69 146 -116 683 330 67 28 chr11 7417378 7417766 -143365787 - L2 LINE L2 0 3272 2870 191 351 0 0 chr11 7417822 7417879 -143365674 - L2 LINE L2 -529 2785 2729 1688 246 93 35 chr11 7418665 7419375 -143364178 + L1M1 LINE L1 2286 3036 -4529 1435 109 5 0 chr11 7419403 7419587 -143363966 + AluSx SINE Alu 1 185 -127 4869 136 31 31 chr11 7419587 7420952 -143362601 + L1M2 LINE L1 4453 5813 -478 345 257 7 44 chr11 7422586 7422722 -143360831 + GA-rich Low_complexity Low_complexity 4 134 0 501 293 47 60 chr11 7422784 7422999 -143360554 + MIR SINE MIR 2 213 -49 297 264 85 12 chr11 7423306 7423445 -143360108 - MIR SINE MIR -52 156 2 299 310 38 32 chr11 7423990 7424148 -143359405 - L2 LINE L2 -35 3278 3120 279 192 128 0 chr11 7424206 7424284 -143359269 - MIR3 SINE MIR -37 171 84 1714 102 9 0 chr11 7424481 7424706 -143358847 - AluSq SINE Alu -86 227 1 329 320 19 39 chr11 7424737 7424943 -143358610 - L1ME LINE L1 -306 5815 5614 563 238 56 14 chr11 7425007 7425150 -143358403 + MIR SINE MIR 44 192 -70 189 345 0 0 chr11 7426293 7426351 -143357202 + MIR SINE MIR 201 258 -4 195 233 0 0 chr11 7427183 7427226 -143356327 + L2 LINE L2 3214 3256 -16 1316 111 79 14 chr11 7427657 7427873 -143355680 + MER4E LTR ERV1 536 765 -1 343 336 47 63 chr11 7428117 7428498 -143355055 - L1ME2 LINE L1 -297 5867 5493 189 121 0 0 chr11 7429163 7429196 -143354357 + (T)n Simple_repeat Simple_repeat 1 33 0 1652 29 10 0 chr11 7429198 7429406 -143354147 - L1PA2 LINE L1 -4 6151 5942 1634 161 4 11 chr11 7429512 7429773 -143353780 - AluJo SINE Alu -53 259 1 321 302 158 7 chr11 7431131 7431270 -143352283 + MIR3 SINE MIR 49 208 0 312 258 92 27 chr11 7431394 7431564 -143351989 + MIR SINE MIR 16 192 -70 219 257 204 0 chr11 7431644 7431757 -143351796 - MIR SINE MIR -12 250 115 1337 74 21 11 chr11 7432658 7432847 -143350706 + AluY SINE Alu 106 296 -15 387 370 61 0 chr11 7432867 7433032 -143350521 - L1M4 LINE L1 -2610 3536 3362 231 61 0 0 chr11 7433164 7433197 -143350356 + (GA)n Simple_repeat Simple_repeat 1 33 0 271 326 35 14 chr11 7435632 7435776 -143347777 - MIR SINE MIR -72 190 44 234 205 14 42 chr11 7435955 7436005 -143347548 + AluJ/monomer SINE Alu 1 31 -269 590 95 12 0 chr11 7436005 7436089 -143347464 - PABL_B LTR ERV1 0 667 583 1097 109 0 44 chr11 7436193 7436376 -143347177 - MER4E LTR ERV1 -244 522 348 1801 113 164 80 chr11 7436450 7436823 -143346730 + MER4A LTR ERV1 261 664 0 1700 154 19 70 chr11 7436823 7437154 -143346399 - MER4E LTR ERV1 -415 351 39 2309 90 3 0 chr11 7437154 7437442 -143346111 - AluSc SINE Alu -9 300 12 1700 154 19 70 chr11 7437442 7437480 -143346073 - MER4E LTR ERV1 -727 39 1 21 0 0 0 chr11 7437969 7437990 -143345563 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr11 7438222 7438243 -143345310 + (CAG)n Simple_repeat Simple_repeat 1 21 0 1110 70 0 0 chr11 7438327 7438456 -143345097 + AluY SINE Alu 1 129 -182 231 232 36 0 chr11 7440753 7440809 -143342744 + C-rich Low_complexity Low_complexity 5 62 0 693 215 41 6 chr11 7441086 7441258 -143342295 + MER96B DNA MER1_type? 1 178 -239 427 248 135 0 chr11 7441314 7441447 -143342106 + MER96B DNA MER1_type? 265 415 -2 199 280 84 56 chr11 7442455 7442562 -143340991 + MIR SINE MIR 102 211 -51 247 329 163 45 chr11 7442581 7442827 -143340726 + L3 LINE CR1 1294 1568 -9 2220 97 0 17 chr11 7443977 7444289 -143339264 - AluSx SINE Alu 0 307 1 304 215 0 15 chr11 7444289 7444354 -143339199 + MLT1H1 LTR MaLR 487 550 -5 357 277 15 29 chr11 7444737 7444874 -143338679 - MER5B DNA MER1_type -10 179 35 2488 73 0 3 chr11 7444959 7445262 -143338291 - AluY SINE Alu -9 302 1 420 204 250 66 chr11 7445344 7445406 -143338147 - MIR SINE MIR -12 250 201 2116 113 10 32 chr11 7445406 7445715 -143337838 - AluSx SINE Alu -10 302 1 420 204 250 66 chr11 7445715 7445848 -143337705 - MIR SINE MIR -61 201 19 307 224 168 19 chr11 7445946 7446053 -143337500 + L2 LINE L2 3150 3272 0 180 286 29 38 chr11 7446884 7446989 -143336564 + MIR SINE MIR 61 164 -98 203 366 188 0 chr11 7447309 7447421 -143336132 - MIR SINE MIR -73 189 57 820 287 12 16 chr11 7447936 7448183 -143335370 - MIR SINE MIR -1 261 16 459 157 0 0 chr11 7448213 7448302 -143335251 + (CA)n Simple_repeat Simple_repeat 1 89 0 256 340 0 0 chr11 7448997 7449100 -143334453 + (TG)n Simple_repeat Simple_repeat 1 103 0 1042 227 113 24 chr11 7450236 7450694 -143332859 - L1MEc LINE L1 -2624 3591 3093 * 1498 235 96 35 chr11 7450670 7451325 -143332228 - L1MEc LINE L1 -5052 1274 623 545 223 33 0 chr11 7451321 7451442 -143332111 - L1ME LINE L1 -368 5798 5674 * 2584 128 49 67 chr11 7451442 7451932 -143331621 + L1MD1 LINE L1 5693 6173 -69 563 170 116 27 chr11 7451932 7452044 -143331509 - FLAM_A SINE Alu -11 122 1 2584 128 49 67 chr11 7452044 7452108 -143331445 + L1MD1 LINE L1 6173 6237 -5 1726 161 0 14 chr11 7452264 7452556 -143330997 - AluSx SINE Alu -22 290 3 21 0 0 0 chr11 7452559 7452580 -143330973 + AT_rich Low_complexity Low_complexity 1 21 0 326 271 10 52 chr11 7452614 7452710 -143330843 + L1M LINE L1 5333 5424 -2384 331 295 77 11 chr11 7453037 7453220 -143330333 - HAL1 LINE L1 -855 1635 1441 21 0 0 0 chr11 7453271 7453292 -143330261 + AT_rich Low_complexity Low_complexity 1 21 0 6287 63 20 1 chr11 7453304 7454098 -143329455 - L1PA6 LINE L1 -2 6152 5344 4487 49 0 0 chr11 7454268 7454823 -143328730 - L1PA6 LINE L1 -887 5259 4705 502 277 26 46 chr11 7454882 7455191 -143328362 - L1MEd LINE L1 -1132 1358 971 2015 132 0 10 chr11 7455192 7455496 -143328057 - AluSx SINE Alu -11 301 1 261 0 0 0 chr11 7455526 7455555 -143327998 + (T)n Simple_repeat Simple_repeat 1 29 0 2250 80 0 10 chr11 7455839 7456141 -143327412 - AluY SINE Alu -12 299 1 2363 149 79 11 chr11 7456257 7456714 -143326839 - L1MA8 LINE L1 -2 6289 5802 1087 141 28 0 chr11 7456714 7456891 -143326662 + AluJb SINE Alu 2 183 -129 356 311 44 22 chr11 7457239 7457374 -143326179 + MIR3 SINE MIR 34 171 -37 211 217 22 0 chr11 7457701 7457747 -143325806 + MIR SINE MIR 173 219 -43 388 276 35 28 chr11 7457788 7457933 -143325620 + L2 LINE L2 2644 2789 -525 529 329 100 42 chr11 7458221 7458601 -143324952 + L1M4 LINE L1 4233 4634 -1512 212 186 34 17 chr11 7459045 7459104 -143324449 + A-rich Low_complexity Low_complexity 3 62 0 406 301 66 46 chr11 7459550 7459746 -143323807 + MIR3 SINE MIR 7 206 -2 190 315 54 95 chr11 7459860 7460155 -143323398 - L2 LINE L2 -22 3250 2968 318 269 19 46 chr11 7461615 7461723 -143321830 + MER91A DNA MER1_type 22 126 -70 248 163 61 0 chr11 7464324 7464373 -143319180 + L3 LINE CR1 1525 1576 -1 1565 160 0 42 chr11 7465978 7466266 -143317287 + AluJb SINE Alu 1 276 -36 242 203 0 29 chr11 7466272 7466341 -143317212 + GA-rich Low_complexity Low_complexity 4 70 0 1015 244 111 32 chr11 7466540 7466884 -143316669 - L2 LINE L2 -15 3298 2928 235 310 71 35 chr11 7467310 7467423 -143316130 + L3 LINE CR1 1291 1407 -170 380 302 191 41 chr11 7468532 7469049 -143314504 + L2 LINE L2 2378 2972 -342 247 401 139 22 chr11 7469167 7469583 -143313970 - L2 LINE L2 -1 3271 2807 252 291 97 37 chr11 7469598 7469732 -143313821 + HAL1 LINE L1 2 143 -2364 569 131 85 0 chr11 7469763 7469893 -143313660 - Charlie5 DNA MER1_type -27 2585 2445 209 321 98 18 chr11 7472050 7472162 -143311391 - L3 LINE CR1 -926 651 531 275 260 0 0 chr11 7472302 7472375 -143311178 + (TCCA)n Simple_repeat Simple_repeat 1 73 0 271 253 26 148 chr11 7472413 7472642 -143310911 - L2 LINE L2 -74 3198 2998 1281 177 56 16 chr11 7472912 7473161 -143310392 + AluJo SINE Alu 1 259 -53 495 270 163 23 chr11 7474100 7474315 -143309238 + MLT1L LTR MaLR 371 615 0 212 200 0 0 chr11 7474881 7474916 -143308637 - MIR SINE MIR -63 145 111 410 208 171 20 chr11 7475161 7475310 -143308243 - MIR SINE MIR -48 214 50 701 303 57 10 chr11 7476835 7477173 -143306380 + L1ME LINE L1 5460 5812 -342 239 299 168 36 chr11 7477903 7478070 -143305483 + MER5A DNA MER1_type 1 189 0 240 35 0 0 chr11 7478174 7478203 -143305350 + (CA)n Simple_repeat Simple_repeat 2 30 0 605 221 12 81 chr11 7480132 7480304 -143303249 - MIR3 SINE MIR -39 169 10 244 344 33 25 chr11 7481349 7481471 -143302082 + L2 LINE L2 3101 3223 -49 3219 210 80 8 chr11 7481701 7482448 -143301105 + MER63C DNA MER1_type 21 821 -109 1870 117 0 7 chr11 7482452 7482733 -143300820 - AluJb SINE Alu -3 309 31 4449 64 0 9 chr11 7482733 7483283 -143300270 + PABL_A LTR ERV1 1 545 -115 736 266 117 38 chr11 7483787 7484103 -143299450 + MER102b DNA MER1_type 1 341 0 246 279 198 18 chr11 7484167 7484278 -143299275 - L2 LINE L2 -6 3266 3136 2061 202 155 4 chr11 7484941 7485411 -143298142 + MLT1G LTR MaLR 3 543 -47 2015 124 56 31 chr11 7486919 7487208 -143296345 + MLT1A1 LTR MaLR 1 302 -63 2149 87 0 10 chr11 7487208 7487497 -143296056 - AluSq SINE Alu -9 304 19 2015 124 56 31 chr11 7487497 7487563 -143295990 + MLT1A1 LTR MaLR 302 365 0 26 30 0 0 chr11 7488321 7488354 -143295199 + AT_rich Low_complexity Low_complexity 1 33 0 2369 76 3 0 chr11 7488374 7488678 -143294875 - AluSp SINE Alu -8 305 1 629 222 9 0 chr11 7489409 7489517 -143294036 - MER68 LTR ERV1 -1 561 453 1633 222 60 58 chr11 7489519 7490020 -143293533 - MER77 LTR ERV1 0 605 104 492 274 25 47 chr11 7490183 7490359 -143293194 + LTR16A1 LTR ERVL 240 383 -74 621 219 46 87 chr11 7490359 7490578 -143292975 - MER63A DNA MER1_type 0 210 1 492 274 25 47 chr11 7490578 7490650 -143292903 + LTR16A1 LTR ERVL 383 455 -2 441 299 30 12 chr11 7490903 7491067 -143292486 + HERVL LTR ERVL 3230 3396 -2258 984 231 38 14 chr11 7491544 7491820 -143291733 - MLT1H LTR MaLR -229 320 3 276 393 19 10 chr11 7491898 7492104 -143291449 + L2 LINE L2 2151 2358 -956 359 313 20 7 chr11 7493045 7493192 -143290361 - L1ME LINE L1 -350 5771 5623 326 340 115 13 chr11 7493323 7493479 -143290074 + MIR SINE MIR 1 172 -90 1206 247 53 51 chr11 7493482 7493915 -143289638 - L2 LINE L2 -1 3312 2879 3148 210 78 24 chr11 7493931 7495545 -143288008 - L1ME1 LINE L1 -135 6031 4333 3957 172 41 59 chr11 7495557 7495983 -143287570 - L1MB4 LINE L1 0 6180 5748 1908 113 0 3 chr11 7495983 7496267 -143287286 - AluSx SINE Alu -17 295 13 3957 172 41 59 chr11 7496267 7497189 -143286364 - L1MB4 LINE L1 -432 5748 4863 1829 192 3 6 chr11 7497189 7497501 -143286052 + AluJb SINE Alu 1 311 -1 3957 172 41 59 chr11 7497501 7497555 -143285998 - L1MB4 LINE L1 -1317 4863 4810 2282 125 0 0 chr11 7497838 7498150 -143285403 - AluSx SINE Alu 0 312 1 346 196 43 22 chr11 7500918 7501010 -143282543 + MER58A DNA MER1_type 42 135 0 264 297 91 29 chr11 7504569 7504744 -143278809 - L3 LINE CR1 -221 1356 1171 294 219 168 66 chr11 7505264 7505401 -143278152 - MIR SINE MIR -54 208 58 185 261 43 0 chr11 7505415 7505461 -143278092 + MIR SINE MIR 101 148 -60 1200 275 108 44 chr11 7505584 7506459 -143277094 - L2 LINE L2 -14 3299 2303 379 318 135 6 chr11 7508769 7508939 -143274614 - MIR3 SINE MIR -2 206 15 309 36 55 0 chr11 7510445 7510500 -143273053 + (TA)n Simple_repeat Simple_repeat 1 58 0 276 266 13 0 chr11 7511236 7511315 -143272238 - MIR3 SINE MIR -52 156 77 194 261 142 52 chr11 7512034 7512168 -143271385 + MIR3 SINE MIR 48 193 -15 211 224 0 35 chr11 7514217 7514275 -143269278 + CT-rich Low_complexity Low_complexity 4 59 0 1813 155 11 14 chr11 7514394 7514678 -143268875 + AluJo SINE Alu 14 296 -16 847 217 17 23 chr11 7514989 7515164 -143268389 - MER5A DNA MER1_type -7 182 9 566 211 8 0 chr11 7517025 7517148 -143266405 + L1MA8 LINE L1 6166 6289 -2 256 260 208 19 chr11 7517209 7517363 -143266190 - L3 LINE CR1 -102 1475 1293 490 291 150 30 chr11 7517376 7517476 -143266077 - MIR SINE MIR 0 262 175 2010 106 0 72 chr11 7517476 7517797 -143265756 - AluY SINE Alu -13 298 1 490 291 150 30 chr11 7517797 7517930 -143265623 - MIR SINE MIR -87 175 1 303 327 53 7 chr11 7517944 7518152 -143265401 - L3 LINE CR1 -344 1233 964 257 303 56 0 chr11 7518497 7518586 -143264967 - MIR3 SINE MIR -33 175 82 227 267 43 60 chr11 7518953 7519069 -143264484 + MIR SINE MIR 27 140 -68 778 154 0 0 chr11 7519197 7519314 -143264239 - FRAM SINE Alu -39 137 21 262 233 27 48 chr11 7519480 7519626 -143263927 + (GGGTG)n Simple_repeat Simple_repeat 3 145 0 223 171 0 0 chr11 7519894 7519935 -143263618 + (TG)n Simple_repeat Simple_repeat 2 42 0 322 312 101 0 chr11 7522415 7522553 -143261000 - MIR SINE MIR -21 241 90 403 244 130 0 chr11 7522944 7523059 -143260494 - MER94 DNA DNA -2 132 3 266 348 101 18 chr11 7523926 7524153 -143259400 - MIR SINE MIR -4 258 13 182 239 87 0 chr11 7524233 7524279 -143259274 + L2 LINE L2 3223 3272 0 315 154 67 67 chr11 7527594 7527698 -143255855 - L1ME4a LINE L1 -3 6118 6015 1574 79 4 35 chr11 7527758 7527985 -143255568 - AluSg/x SINE Alu -2 308 89 969 274 62 22 chr11 7528085 7528486 -143255067 - L1ME4a LINE L1 -213 5908 5492 2835 202 97 68 chr11 7528761 7529760 -143253793 + L1M3e LINE L1 978 2025 -5012 2321 121 0 6 chr11 7529760 7530075 -143253478 + AluSq SINE Alu 1 313 0 2835 202 97 68 chr11 7530075 7530216 -143253337 + L1M3e LINE L1 2025 2160 -4877 469 125 45 23 chr11 7530353 7530441 -143253112 + AluJ/FRAM SINE Alu 223 312 0 306 0 0 0 chr11 7530455 7530489 -143253064 + (CAAG)n Simple_repeat Simple_repeat 2 35 0 688 236 40 5 chr11 7530489 7530679 -143252874 + L1ME1 LINE L1 3516 3715 -2431 * 3616 209 67 14 chr11 7530678 7531317 -143252236 + L1ME1 LINE L1 4434 5038 -1296 2404 92 0 16 chr11 7531317 7531633 -143251920 + AluY SINE Alu 1 311 0 3616 209 67 14 chr11 7531633 7532094 -143251459 + L1ME1 LINE L1 5038 5473 -861 2022 119 17 30 chr11 7532094 7532396 -143251157 + AluSx SINE Alu 1 298 -14 3616 209 67 14 chr11 7532396 7532945 -143250608 + L1ME1 LINE L1 5473 6332 -2 573 292 50 12 chr11 7533295 7533456 -143250097 - MIR3 SINE MIR -22 186 20 281 291 97 48 chr11 7533651 7533816 -143249737 - MIR3 SINE MIR -10 198 26 359 372 78 37 chr11 7535010 7535096 -143248457 + L2 LINE L2 1805 1886 -1428 2640 36 7 0 chr11 7535096 7535399 -143248154 - AluY SINE Alu -6 305 1 359 372 78 37 chr11 7535399 7535850 -143247703 + L2 LINE L2 1886 2364 -950 300 300 89 48 chr11 7536137 7536430 -143247123 + L2 LINE L2 2179 2483 -831 533 262 41 35 chr11 7536456 7536628 -143246925 + MLT1K LTR MaLR 69 241 -347 229 198 48 111 chr11 7536773 7536899 -143246654 + LTR67 LTR ERVL 432 549 -8 218 309 62 0 chr11 7537009 7537090 -143246463 + L2 LINE L2 2662 2747 -567 498 286 90 108 chr11 7537114 7537441 -143246112 - L2 LINE L2 -337 2977 2646 306 73 0 0 chr11 7537441 7537482 -143246071 + (CTCA)n Simple_repeat Simple_repeat 2 42 0 498 286 90 108 chr11 7537482 7537888 -143245665 - L2 LINE L2 -668 2646 2257 2095 98 4 4 chr11 7537955 7538230 -143245323 + AluSx SINE Alu 1 275 -37 342 266 65 43 chr11 7538388 7538527 -143245026 + HAL1 LINE L1 231 372 -2135 1499 147 4 25 chr11 7538529 7538774 -143244779 + AluJo SINE Alu 1 240 -72 321 87 0 0 chr11 7538840 7538886 -143244667 + AluJo SINE Alu 247 292 -10 618 299 43 9 chr11 7539027 7539238 -143244315 - MIR SINE MIR -44 218 1 605 263 81 84 chr11 7539301 7539636 -143243917 - L2 LINE L2 -809 2505 2172 983 318 84 44 chr11 7539685 7539843 -143243710 - L2 LINE L2 -2620 694 544 1748 108 43 49 chr11 7539843 7540178 -143243375 - AluY SINE Alu 0 311 1 983 318 84 44 chr11 7540178 7540364 -143243189 - L2 LINE L2 -2770 544 367 2430 95 3 0 chr11 7540364 7540670 -143242883 + AluSc SINE Alu 1 307 -2 983 318 84 44 chr11 7540670 7540943 -143242610 - L2 LINE L2 -2947 367 51 2221 123 0 3 chr11 7541176 7541477 -143242076 + AluSx SINE Alu 1 300 -12 387 273 21 103 chr11 7542237 7542431 -143241122 - MIR3 SINE MIR -30 178 1 2338 86 3 17 chr11 7542682 7542983 -143240570 - AluSc SINE Alu -12 297 1 1656 223 14 6 chr11 7544001 7544364 -143239189 + MLT2D LTR ERVL 1 366 -48 331 324 89 51 chr11 7544658 7545028 -143238525 + LTR67 LTR ERVL 36 419 -138 233 226 48 16 chr11 7545001 7545063 -143238490 + MIR SINE MIR 83 146 -116 * 899 309 112 11 chr11 7546350 7546726 -143236827 + LTR16C LTR ERVL 78 491 0 390 194 10 51 chr11 7546900 7546998 -143236555 + MLT1K LTR MaLR 479 572 -16 855 207 66 10 chr11 7547442 7547640 -143235913 + ORSL DNA AcHobo 1 209 -66 1334 280 74 11 chr11 7548640 7549100 -143234453 + L2 LINE L2 2824 3312 -1 238 49 0 0 chr11 7549249 7549290 -143234263 + Alu SINE Alu 259 299 0 237 206 315 22 chr11 7549308 7549400 -143234153 - L2 LINE L2 -4 3309 3191 198 250 71 0 chr11 7549704 7549760 -143233793 + L2 LINE L2 2688 2747 -567 1864 197 28 23 chr11 7550332 7550722 -143232831 + MSTD LTR MaLR 1 392 -4 21 0 0 0 chr11 7551353 7551374 -143232179 + AT_rich Low_complexity Low_complexity 1 21 0 8293 40 16 0 chr11 7551374 7553101 -143230452 - L1PA5 LINE L1 -7 6147 4405 241 292 0 0 chr11 7553297 7553369 -143230184 + MIR SINE MIR 191 262 0 2194 125 3 0 chr11 7554390 7554694 -143228859 - AluSq SINE Alu -8 305 1 4813 57 24 3 chr11 7555918 7556497 -143227056 + LTR10C LTR ERV1 1 591 0 198 0 0 0 chr11 7557006 7557028 -143226525 + (T)n Simple_repeat Simple_repeat 1 22 0 255 304 38 25 chr11 7557057 7557136 -143226417 + MIR SINE MIR 27 106 -102 1583 237 37 37 chr11 7557737 7558168 -143225385 + MLT1J1 LTR MaLR 16 446 0 22241 32 2 0 chr11 7558180 7560823 -143222730 + L1P LINE L1 1770 4418 -1728 22 0 0 0 chr11 7561225 7561247 -143222306 + AT_rich Low_complexity Low_complexity 1 22 0 6314 125 8 11 chr11 7561643 7563009 -143220544 - L1PA15 LINE L1 -4 6161 4795 3378 210 82 19 chr11 7563404 7564284 -143219269 - L1ME1 LINE L1 -17 6218 5252 1982 146 0 3 chr11 7564284 7564585 -143218968 - AluJb SINE Alu -12 300 1 3378 210 82 19 chr11 7564585 7564809 -143218744 - L1ME1 LINE L1 -983 5252 5044 301 262 37 19 chr11 7564914 7565021 -143218532 - HAL1b LINE L1 -49 1299 1191 699 83 4 78 chr11 7565125 7565392 -143218161 + AluSc SINE Alu 1 309 0 21 0 0 0 chr11 7565457 7565478 -143218075 + AT_rich Low_complexity Low_complexity 1 21 0 373 283 117 33 chr11 7566259 7566763 -143216790 - L1ME1 LINE L1 -1227 4988 4437 405 293 40 30 chr11 7566868 7567066 -143216487 - L1ME1 LINE L1 -1924 4291 4092 313 344 83 6 chr11 7567089 7567246 -143216307 - L1ME1 LINE L1 -2275 3940 3772 931 133 7 0 chr11 7567249 7567384 -143216169 + AluJb SINE Alu 6 141 -171 43 20 0 0 chr11 7567406 7567456 -143216097 + AT_rich Low_complexity Low_complexity 1 50 0 232 222 0 28 chr11 7567500 7567572 -143215981 + (TA)n Simple_repeat Simple_repeat 2 71 0 1741 99 4 0 chr11 7567661 7567894 -143215659 - L1PA11 LINE L1 -2 6172 5939 26 0 0 0 chr11 7568179 7568205 -143215348 + AT_rich Low_complexity Low_complexity 1 26 0 489 195 0 0 chr11 7568271 7568353 -143215200 + Tigger4(Zombi) DNA MER2_type 1 82 -2649 3728 94 16 0 chr11 7568358 7568867 -143214686 + Tigger4(Zombi) DNA MER2_type 2212 2728 -3 28 0 0 0 chr11 7568935 7568963 -143214590 + AT_rich Low_complexity Low_complexity 1 28 0 684 228 115 48 chr11 7569085 7569422 -143214131 + MLT1I LTR MaLR 50 435 -11 242 250 17 0 chr11 7569440 7569500 -143214053 - L1ME1 LINE L1 -3129 3086 3026 300 204 0 112 chr11 7569532 7569630 -143213923 - L1MC4 LINE L1 -1339 6703 6617 * 301 202 0 101 chr11 7569542 7569641 -143213912 + L1MC4 LINE L1 6614 6702 -1340 218 182 39 13 chr11 7569648 7569725 -143213828 + (TA)n Simple_repeat Simple_repeat 1 79 0 423 159 47 29 chr11 7569749 7569919 -143213634 + (TATATG)n Simple_repeat Simple_repeat 4 176 0 455 33 16 0 chr11 7570103 7570164 -143213389 + (TG)n Simple_repeat Simple_repeat 2 63 0 305 219 47 0 chr11 7571203 7571267 -143212286 + MIR3 SINE MIR 112 178 -30 268 241 23 69 chr11 7571321 7571383 -143212170 + MIR3 SINE MIR 111 169 -39 2429 135 25 3 chr11 7571383 7571739 -143211814 + THE1B LTR MaLR 1 364 0 268 241 23 69 chr11 7571739 7571763 -143211790 + MIR3 SINE MIR 169 193 -15 216 182 0 0 chr11 7571813 7571857 -143211696 + (CA)n Simple_repeat Simple_repeat 2 45 0 384 271 146 7 chr11 7573806 7573957 -143209596 - MIR3 SINE MIR -19 189 18 5450 171 58 13 chr11 7574923 7576892 -143206661 - L1MB8 LINE L1 -13 6165 4109 1012 276 116 10 chr11 7576935 7577454 -143206099 - L1ME1 LINE L1 -4929 1467 894 3056 224 49 60 chr11 7577474 7578284 -143205269 - MER21B LTR ERV1 -51 812 12 2017 262 100 20 chr11 7578300 7578461 -143205092 - L1ME1 LINE L1 -5523 873 726 1384 127 103 0 chr11 7578461 7578674 -143204879 + MER46A DNA MER2_type 1 235 -1 2017 262 100 20 chr11 7578674 7579301 -143204252 - L1ME1 LINE L1 -5670 726 22 592 337 128 36 chr11 7579312 7579756 -143203797 + L2 LINE L2 2286 2687 -585 1496 129 44 22 chr11 7579756 7579981 -143203572 + MER30 DNA MER1_type 1 230 0 592 337 128 36 chr11 7579981 7580443 -143203110 + L2 LINE L2 2687 3272 0 450 218 53 53 chr11 7580910 7581043 -143202510 + L2 LINE L2 3179 3311 -2 * 796 247 38 0 chr11 7581041 7581227 -143202326 - MIR SINE MIR 0 262 70 201 74 0 0 chr11 7581250 7581277 -143202276 + (TGAA)n Simple_repeat Simple_repeat 4 30 0 1594 201 0 28 chr11 7581331 7581650 -143201903 - AluJo SINE Alu -2 310 1 350 315 117 19 chr11 7581835 7582048 -143201505 - MIR SINE MIR -26 236 3 527 276 30 0 chr11 7582264 7582398 -143201155 + MER5A DNA MER1_type 52 189 0 366 85 0 0 chr11 7582507 7582566 -143200987 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 22 35 0 0 chr11 7582611 7582640 -143200913 + AT_rich Low_complexity Low_complexity 1 29 0 452 229 34 8 chr11 7582666 7582784 -143200769 - L1ME4a LINE L1 -24 6097 5977 * 2813 229 52 22 chr11 7582782 7583547 -143200006 - L1ME3A LINE L1 0 6170 5383 877 280 106 16 chr11 7584220 7584606 -143198947 - L1ME4a LINE L1 -206 5915 5495 469 285 92 88 chr11 7584760 7585426 -143198127 - L1ME4a LINE L1 -1113 5033 4362 2430 71 0 19 chr11 7585426 7585735 -143197818 - AluY SINE Alu -8 303 1 469 285 92 88 chr11 7585735 7585985 -143197568 - L1ME4a LINE L1 -1784 4362 4114 320 345 16 51 chr11 7586015 7586270 -143197283 - L1ME4a LINE L1 -2168 3978 3733 462 313 33 0 chr11 7587112 7587262 -143196291 + MIR SINE MIR 21 175 -87 552 253 39 52 chr11 7588959 7589113 -143194440 + MER91A DNA MER1_type 4 155 -41 1071 250 68 78 chr11 7589213 7589761 -143193792 - MLT1H LTR MaLR 0 549 8 309 185 0 0 chr11 7591749 7591803 -143191750 + L2 LINE L2 3217 3270 -2 216 321 108 20 chr11 7592038 7592209 -143191344 + MIR SINE MIR 30 212 -50 23 0 0 0 chr11 7592873 7592896 -143190657 + AT_rich Low_complexity Low_complexity 1 23 0 574 238 76 43 chr11 7593766 7593899 -143189654 + MIR SINE MIR 60 202 -60 423 205 0 0 chr11 7593899 7593977 -143189576 + MER116 DNA Mariner 1 78 -2 574 238 76 43 chr11 7593977 7594028 -143189525 + MIR SINE MIR 202 250 -12 2770 20 0 0 chr11 7594364 7594669 -143188884 - AluY SINE Alu -6 305 1 288 65 78 0 chr11 7594767 7594844 -143188709 + (TA)n Simple_repeat Simple_repeat 2 84 0 197 318 11 57 chr11 7594947 7595035 -143188518 - L3 LINE CR1 -257 1320 1237 * 207 338 48 48 chr11 7595011 7595156 -143188397 - L2 LINE L2 -6 3266 3122 1385 189 18 49 chr11 7595284 7595569 -143187984 + AluJo SINE Alu 3 278 -34 195 69 0 0 chr11 7595573 7595602 -143187951 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 4745 167 48 57 chr11 7595651 7596561 -143186992 - L1MB8 LINE L1 0 6178 5261 1818 176 0 19 chr11 7596561 7596873 -143186680 - AluJo SINE Alu -5 307 2 4745 167 48 57 chr11 7596873 7598266 -143185287 - L1MB8 LINE L1 -917 5261 3804 447 19 0 0 chr11 7598297 7598349 -143185204 + (TG)n Simple_repeat Simple_repeat 2 53 0 2312 122 0 0 chr11 7598422 7598734 -143184819 + AluSx SINE Alu 1 312 0 411 306 95 12 chr11 7598766 7599008 -143184545 - L2 LINE L2 -459 2855 2594 354 287 70 60 chr11 7599040 7599340 -143184213 - MLT1K LTR MaLR -6 582 280 433 149 0 0 chr11 7599557 7599624 -143183929 - AluJ/FLAM SINE Alu -223 89 23 3424 57 94 0 chr11 7600027 7600452 -143183101 + MER4C LTR ERV1 1 465 0 371 327 148 30 chr11 7600475 7600974 -143182579 - L3 LINE CR1 -320 1257 700 1276 182 36 61 chr11 7600974 7601303 -143182250 - L1MC5 LINE L1 -30 7931 7611 1895 126 0 11 chr11 7601398 7601661 -143181892 - AluSq SINE Alu -53 260 1 1164 246 98 37 chr11 7601819 7602339 -143181214 + L2 LINE L2 2632 3213 -100 2410 88 3 0 chr11 7602339 7602646 -143180907 + AluSg SINE Alu 1 308 -2 1164 246 98 37 chr11 7602646 7602753 -143180800 + L2 LINE L2 3213 3312 -1 319 243 81 0 chr11 7602847 7602958 -143180595 + L1ME4a LINE L1 5764 5883 -238 1692 41 15 0 chr11 7602995 7603191 -143180362 + L1PA5 LINE L1 5956 6154 0 339 248 128 8 chr11 7603200 7603317 -143180236 + L1ME4a LINE L1 5990 6120 -1 2118 122 26 0 chr11 7604062 7604366 -143179187 + AluSx SINE Alu 1 312 0 338 183 0 12 chr11 7604892 7604974 -143178579 + (CATATA)n Simple_repeat Simple_repeat 2 82 0 3530 174 17 2 chr11 7605532 7606131 -143177422 - MER90 LTR ERV1 -6 608 1 388 292 124 52 chr11 7606589 7606822 -143176731 - MIR SINE MIR -6 256 7 228 284 0 54 chr11 7606859 7606933 -143176620 - L2 LINE L2 -559 2755 2686 2361 94 7 0 chr11 7607503 7607802 -143175751 - AluSx SINE Alu -11 301 1 1667 168 11 11 chr11 7607855 7608135 -143175418 - AluJo SINE Alu -7 305 26 492 308 0 0 chr11 7608383 7608529 -143175024 + L1ME3A LINE L1 5713 5858 -312 520 123 0 105 chr11 7608598 7608712 -143174841 - L1MB3 LINE L1 -18 6165 6064 248 318 182 20 chr11 7609211 7609607 -143173946 - L2 LINE L2 -862 2452 1993 290 311 38 57 chr11 7609758 7609864 -143173689 + L2 LINE L2 3155 3258 -14 311 274 77 17 chr11 7610167 7610284 -143173269 + L3 LINE CR1 1358 1481 -96 4630 158 38 42 chr11 7610337 7611164 -143172389 - L1MB8 LINE L1 -6 6172 5343 2203 113 0 10 chr11 7611164 7611466 -143172087 - AluSx SINE Alu -13 299 1 4630 158 38 42 chr11 7611466 7611498 -143172055 - L1MB8 LINE L1 -835 5343 5312 2708 26 3 3 chr11 7611498 7611807 -143171746 - AluY SINE Alu -2 309 1 4630 158 38 42 chr11 7611807 7612212 -143171341 - L1MB8 LINE L1 -866 5312 4897 201 296 0 0 chr11 7612213 7612257 -143171296 + L3 LINE CR1 1531 1574 -3 4162 145 90 9 chr11 7612804 7613468 -143170085 - MER72 LTR ERV1 0 722 5 1498 155 7 58 chr11 7613887 7614197 -143169356 - AluY SINE Alu -1 310 17 1152 242 37 0 chr11 7664207 7664480 -143119073 - L1ME LINE L1 -362 5808 5526 * 5111 138 9 1 chr11 7664479 7665275 -143118278 + L1PA16 LINE L1 5364 6165 -1 261 180 0 0 chr11 7665274 7665324 -143118229 - L1ME LINE L1 -625 5539 5487 * 1241 238 53 3 chr11 7665449 7665752 -143117801 - L1ME2 LINE L1 -268 6691 6374 835 191 0 7 chr11 7665764 7665911 -143117642 + FRAM SINE Alu 6 151 -25 271 191 0 0 chr11 7665924 7665971 -143117582 - L1ME2 LINE L1 -595 6364 6318 1627 214 28 87 chr11 7666010 7666576 -143116977 + MER34 LTR ERV1 10 542 0 1498 134 46 21 chr11 7667356 7667639 -143115914 - MER4-int LTR ERV1 -1455 5143 4854 * 8300 112 53 42 chr11 7667631 7668189 -143115364 + LTR8A-int LTR ERV1 5120 5670 -928 3877 164 51 19 chr11 7668189 7668891 -143114662 + LTR8A LTR ERV1 1 725 -2 8300 112 53 42 chr11 7668891 7669793 -143113760 + LTR8A-int LTR ERV1 5670 6596 -2 3776 114 23 46 chr11 7669801 7670415 -143113138 + MER4A LTR ERV1 1 600 0 440 342 55 29 chr11 7671510 7671998 -143111555 + L2 LINE L2 1334 1834 -1480 697 245 185 79 chr11 7672010 7672654 -143110899 - HAL1 LINE L1 0 2507 1780 2196 145 0 0 chr11 7672654 7672965 -143110588 - AluSx SINE Alu -1 311 1 697 245 185 79 chr11 7672965 7673029 -143110524 - HAL1 LINE L1 -727 1780 1724 2035 142 0 0 chr11 7674651 7674954 -143108599 + AluSx SINE Alu 1 303 -9 221 215 0 13 chr11 7675019 7675098 -143108455 + GA-rich Low_complexity Low_complexity 1 78 0 2640 42 0 3 chr11 7676337 7676644 -143106909 + AluY SINE Alu 1 306 -5 2536 174 22 0 chr11 7676654 7677067 -143106486 - MSTB LTR MaLR -4 422 1 243 291 0 23 chr11 7677312 7677398 -143106155 + (CA)n Simple_repeat Simple_repeat 1 84 0 6078 168 40 27 chr11 7679210 7680062 -143103491 + L1MC2 LINE L1 4407 5247 -1097 2011 92 0 0 chr11 7680062 7680313 -143103240 + AluSc SINE Alu 40 290 -19 6078 168 40 27 chr11 7680313 7681276 -143102277 + L1MC2 LINE L1 5247 6261 -83 1252 147 20 33 chr11 7681276 7681521 -143102032 - L1MA10 LINE L1 -7 6327 6086 6078 168 40 27 chr11 7681521 7681585 -143101968 + L1MC2 LINE L1 6261 6323 -21 315 80 0 0 chr11 7681576 7681626 -143101927 + L1MC3 LINE L1 7575 7624 -161 * 1752 266 103 22 chr11 7681658 7682691 -143100862 - L1ME2 LINE L1 -877 6064 4949 2309 93 0 3 chr11 7682753 7683044 -143100509 - AluSq SINE Alu -21 292 3 511 263 158 7 chr11 7683761 7683913 -143099640 + MER5A DNA MER1_type 9 183 -6 2606 59 0 0 chr11 7683945 7684250 -143099303 - AluY SINE Alu -6 305 1 443 333 31 26 chr11 7684287 7684479 -143099074 - L1ME2 LINE L1 -5408 1015 823 41 72 0 0 chr11 7684627 7684710 -143098843 + AT_rich Low_complexity Low_complexity 1 83 0 417 117 130 0 chr11 7684710 7684787 -143098766 - L1MB2 LINE L1 -7 6164 6078 3147 198 40 60 chr11 7684794 7684853 -143098700 - L1MC4a LINE L1 0 7808 7749 761 227 0 0 chr11 7684853 7684985 -143098568 + FLAM_A SINE Alu 2 133 0 3147 198 40 60 chr11 7684985 7685729 -143097824 - L1MC4a LINE L1 -59 7749 7021 867 252 31 24 chr11 7685735 7685989 -143097564 - L1ME3A LINE L1 -5 6165 5910 260 277 264 34 chr11 7686218 7686366 -143097187 - L1ME3A LINE L1 -2073 5735 5554 184 333 46 11 chr11 7687501 7687588 -143095965 - MIR3 SINE MIR -5 203 114 542 264 149 27 chr11 7687770 7688115 -143095438 - LTR16A LTR ERVL -4 446 21 264 75 0 0 chr11 7688516 7688556 -143094997 - L1MA9 LINE L1 -3 6309 6270 300 269 239 13 chr11 7688557 7688791 -143094762 + L2 LINE L2 2275 2561 -753 26 0 0 0 chr11 7689353 7689379 -143094174 + AT_rich Low_complexity Low_complexity 1 26 0 10047 167 15 98 chr11 7689385 7692567 -143090986 + L1M2a LINE L1 6 2930 -4238 277 326 30 52 chr11 7693598 7693831 -143089722 + MLT1K LTR MaLR 316 543 -45 261 243 68 14 chr11 7694803 7694877 -143088676 - MIR SINE MIR -78 130 53 197 273 189 35 chr11 7696136 7696279 -143087274 - MIR3 SINE MIR -18 190 26 413 209 51 10 chr11 7696279 7696434 -143087119 - LTR36 LTR ERV1 -1 610 395 256 287 34 72 chr11 7697799 7697916 -143085637 - L1MC/D LINE L1 -1972 5836 5716 2350 90 10 0 chr11 7697916 7698216 -143085337 - AluSp SINE Alu -10 303 1 256 287 34 72 chr11 7698216 7698391 -143085162 - L1MC/D LINE L1 -2092 5716 5555 665 155 14 27 chr11 7698742 7698890 -143084663 + MER4C LTR ERV1 1 146 -319 327 290 25 49 chr11 7699310 7699472 -143084081 - HERVL LTR ERVL -1460 4194 4037 742 321 36 24 chr11 7699844 7700180 -143083373 - HERVL LTR ERVL -4335 661 322 1969 178 23 25 chr11 7700214 7700607 -143082946 - MSTB1 LTR MaLR 0 432 41 6606 68 0 0 chr11 7700607 7701637 -143081916 - L1PA5 LINE L1 -1 6153 5101 10090 81 9 1 chr11 7701637 7703075 -143080478 + L1PA5 LINE L1 3651 5100 -1046 30 0 0 0 chr11 7703284 7703314 -143080239 + AT_rich Low_complexity Low_complexity 1 30 0 325 306 47 80 chr11 7703432 7703707 -143079846 - L1M4 LINE L1 -3366 2780 2515 254 259 63 28 chr11 7703783 7703926 -143079627 - L1ME3A LINE L1 0 6170 6023 364 264 47 39 chr11 7706121 7706250 -143077303 - L2 LINE L2 0 3313 3184 291 114 0 0 chr11 7706253 7706297 -143077256 + (TA)n Simple_repeat Simple_repeat 1 44 0 237 173 53 0 chr11 7706310 7706385 -143077168 + (TA)n Simple_repeat Simple_repeat 2 80 0 363 167 0 0 chr11 7706467 7706533 -143077020 + (TA)n Simple_repeat Simple_repeat 1 66 0 477 331 94 20 chr11 7708664 7708963 -143074590 - L1ME3A LINE L1 -253 5868 5548 2525 178 9 38 chr11 7709860 7710412 -143073141 - LTR27 LTR ERV1 -98 538 3 441 289 41 84 chr11 7711244 7711660 -143071893 + MLT1J LTR MaLR 109 506 -5 24 0 0 0 chr11 7711670 7711694 -143071859 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr11 7711818 7711842 -143071711 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr11 7711907 7711930 -143071623 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr11 7712532 7712555 -143070998 + AT_rich Low_complexity Low_complexity 1 23 0 22952 35 0 0 chr11 7712557 7716134 -143067419 + L1PA2 LINE L1 2572 6154 -1 334 267 9 0 chr11 7716199 7716304 -143067249 - L1ME LINE L1 -461 5660 5555 32 91 0 0 chr11 7716429 7716517 -143067036 + AT_rich Low_complexity Low_complexity 1 88 0 1789 155 3 32 chr11 7716960 7717270 -143066283 + AluJb SINE Alu 1 301 -11 4747 142 55 16 chr11 7717298 7718165 -143065388 - MER4D LTR ERV1 0 903 3 606 215 35 14 chr11 7718295 7718439 -143065114 + MER93b LTR ERV1 1 147 -226 3270 59 25 7 chr11 7718491 7718931 -143064622 + LTR7 LTR ERV1 1 448 -2 18732 99 69 14 chr11 7718933 7722051 -143061502 + HERVH LTR ERV1 1 3290 -4423 3084 124 8 6 chr11 7722041 7722542 -143061011 + HERVH LTR ERV1 3492 3993 -3720 * 4121 139 1 3 chr11 7722544 7723207 -143060346 + HERVH LTR ERV1 4488 5149 -2564 1325 124 18 9 chr11 7723208 7723426 -143060127 + HERVH LTR ERV1 5600 5819 -1894 2393 75 48 3 chr11 7723426 7723799 -143059754 + HERVH LTR ERV1 7324 7713 0 3480 58 0 7 chr11 7723799 7724250 -143059303 + LTR7 LTR ERV1 1 448 -2 453 215 15 15 chr11 7724250 7724380 -143059173 + MER93b LTR ERV1 244 373 0 770 198 80 0 chr11 7724917 7725079 -143058474 - MER5A DNA MER1_type -2 187 13 312 192 0 90 chr11 7725122 7725200 -143058353 + MIR SINE MIR 183 253 -9 486 136 62 0 chr11 7725639 7725720 -143057833 + LTR54B LTR ERV1 1 86 -412 3145 121 0 0 chr11 7725720 7726198 -143057355 + MER41B LTR ERV1 1 478 -157 1264 188 88 40 chr11 7726195 7726764 -143056789 - LTR48B LTR ERV1 -21 614 1 * 324 192 0 0 chr11 7726764 7726835 -143056718 + MER57A LTR ERV1 331 401 -2 2141 129 7 0 chr11 7726917 7727227 -143056326 + AluSq SINE Alu 1 312 -1 2401 130 35 21 chr11 7727712 7728143 -143055410 - LTR23 LTR ERV1 0 437 1 5328 164 31 22 chr11 7728240 7729626 -143053927 - LTR23-int LTR ERV1 -101 5699 4415 2887 43 13 5 chr11 7729793 7730169 -143053384 + LTR10C LTR ERV1 1 379 -212 2133 143 35 20 chr11 7730172 7730578 -143052975 + LTR3 LTR ERVK 5 416 -16 23955 132 20 13 chr11 7730640 7734894 -143048659 + HERVK3 LTR ERVK 2 4226 -1719 1506 130 41 0 chr11 7734894 7735140 -143048413 + L1PA15 LINE L1 5910 6165 0 23955 132 20 13 chr11 7735140 7735162 -143048391 + HERVK3 LTR ERVK 4226 4246 -1699 216 0 0 0 chr11 7735162 7735186 -143048367 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 23955 132 20 13 chr11 7735186 7735875 -143047678 + HERVK3 LTR ERVK 4246 5238 -707 2311 84 0 3 chr11 7735875 7736171 -143047382 - AluY SINE Alu -16 295 1 23955 132 20 13 chr11 7736171 7736540 -143047013 + HERVK3 LTR ERVK 5238 5603 -342 653 106 0 0 chr11 7736536 7736630 -143046923 + HERVK3 LTR ERVK 7150 7243 0 * 2137 165 14 17 chr11 7736634 7737047 -143046506 + LTR3 LTR ERVK 5 416 -16 1688 65 9 0 chr11 7737069 7737286 -143046267 + LTR10C LTR ERV1 373 591 0 1189 175 37 20 chr11 7737325 7737571 -143045982 + MLT1B LTR MaLR 3 252 -138 521 195 65 0 chr11 7737566 7737689 -143045864 + LTR23 LTR ERV1 11 141 -296 * 2500 72 0 3 chr11 7737783 7738088 -143045465 - AluY SINE Alu -7 304 1 668 209 36 0 chr11 7738730 7738926 -143044627 - L1ME3A LINE L1 -219 5951 5749 799 114 15 0 chr11 7739021 7739152 -143044401 + LTR23 LTR ERV1 167 299 -138 749 189 0 0 chr11 7739160 7739287 -143044266 + FLAM_C SINE Alu 2 128 -5 614 196 0 29 chr11 7739304 7739442 -143044111 + LTR23 LTR ERV1 293 426 -11 632 193 21 21 chr11 7739548 7739688 -143043865 + LTR23 LTR ERV1 298 437 0 793 161 35 0 chr11 7739688 7739831 -143043722 + MLT1B LTR MaLR 240 387 -3 1845 171 34 0 chr11 7739993 7740286 -143043267 - AluJo SINE Alu -9 303 1 1019 189 137 107 chr11 7740545 7741041 -143042512 + MER67D LTR ERV1 1 511 -3 681 224 63 40 chr11 7741093 7741316 -143042237 + MER110A LTR ERV1 17 244 -224 261 318 56 19 chr11 7741643 7741750 -143041803 - MLT-int LTR MaLR -1219 516 406 345 47 0 0 chr11 7742086 7742129 -143041424 + (TG)n Simple_repeat Simple_repeat 2 44 0 476 280 109 71 chr11 7742211 7742820 -143040733 - L2 LINE L2 -5 3308 2653 861 125 0 0 chr11 7743345 7743465 -143040088 + FLAM_C SINE Alu 6 125 -18 439 282 213 23 chr11 7743465 7743681 -143039872 - MIR SINE MIR -5 257 1 1911 194 94 2 chr11 7744507 7744976 -143038577 + Charlie1b DNA MER1_type 6 517 -6 504 276 115 21 chr11 7746187 7746403 -143037150 - MIR SINE MIR -4 258 30 320 351 98 65 chr11 7746446 7746639 -143036914 - L2 LINE L2 -5 3267 3057 470 46 15 0 chr11 7746639 7746704 -143036849 + (TCTA)n Simple_repeat Simple_repeat 2 67 0 320 351 98 65 chr11 7746704 7746835 -143036718 - L2 LINE L2 -215 3057 2932 460 86 57 0 chr11 7746936 7747006 -143036547 + U6 snRNA snRNA 1 74 -33 354 356 86 29 chr11 7747265 7747543 -143036010 - L2 LINE L2 -565 2749 2456 24 100 0 0 chr11 7747666 7747746 -143035807 + AT_rich Low_complexity Low_complexity 1 80 0 2277 128 0 0 chr11 7747796 7748108 -143035445 + AluSx SINE Alu 1 312 0 1912 268 36 11 chr11 7748442 7749241 -143034312 + L1M2 LINE L1 16 920 -5929 6890 121 9 6 chr11 7749341 7750697 -143032856 - L1P2 LINE L1 -571 5583 4226 5432 153 34 26 chr11 7750797 7751927 -143031626 - HERVH LTR ERV1 -6156 1557 420 1034 246 84 8 chr11 7752027 7752385 -143031168 - L1MDa LINE L1 -4653 1887 1503 981 167 0 32 chr11 7752385 7752571 -143030982 + MER46A DNA MER2_type 1 180 -56 589 188 57 17 chr11 7752575 7752751 -143030802 - L1 LINE L1 -1537 4609 4427 5784 157 41 61 chr11 7752762 7754104 -143029449 + L1P LINE L1 3014 4276 -1870 7796 16 0 0 chr11 7754104 7755182 -143028371 - L1PA3 LINE L1 0 6155 5078 5784 157 41 61 chr11 7755182 7755923 -143027630 + L1P LINE L1 4276 5030 -1116 243 0 0 0 chr11 7755943 7755970 -143027583 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 2051 117 25 0 chr11 7755972 7756246 -143027307 - AluSx SINE Alu -31 281 1 1238 199 4 0 chr11 7756246 7756513 -143027040 - L1 LINE L1 -922 5288 5021 * 2095 225 52 2 chr11 7756511 7757120 -143026433 - L1 LINE L1 -4543 1598 959 224 30 30 0 chr11 7757447 7757480 -143026073 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 706 300 38 54 chr11 7757577 7758023 -143025530 - LTR16A1 LTR ERVL 0 457 19 326 264 27 18 chr11 7760812 7760922 -143022631 + MIR SINE MIR 74 184 -78 186 359 34 60 chr11 7761261 7761495 -143022058 - L2 LINE L2 -902 2412 2185 254 361 23 23 chr11 7761609 7761739 -143021814 + L2 LINE L2 2921 3050 -263 251 360 75 6 chr11 7761875 7762036 -143021517 + MIR SINE MIR 86 257 -5 216 135 0 0 chr11 7764476 7764513 -143019040 + (TG)n Simple_repeat Simple_repeat 2 38 0 504 176 0 0 chr11 7764620 7764722 -143018831 + GA-rich Low_complexity Low_complexity 3 104 0 401 279 53 37 chr11 7764758 7764948 -143018605 + L1M4 LINE L1 3257 3449 -2697 3459 228 60 44 chr11 7765273 7765988 -143017565 - L1M4 LINE L1 -717 5461 4758 2049 130 11 0 chr11 7765988 7766272 -143017281 - AluSx SINE Alu -25 287 1 3459 228 60 44 chr11 7766272 7766988 -143016565 - L1M4 LINE L1 -1420 4758 4012 4799 179 29 13 chr11 7767004 7768934 -143014619 + L1PB4 LINE L1 4193 6151 -5 1145 270 97 6 chr11 7768950 7769435 -143014118 + L1 LINE L1 2315 2843 -3303 40012 32 30 2 chr11 7769446 7775429 -143008124 + L1PA2 LINE L1 1 6154 -1 6674 204 71 32 chr11 7775441 7776293 -143007260 + L1 LINE L1 2839 3656 -2490 2347 109 0 0 chr11 7776293 7776595 -143006958 + AluSq SINE Alu 1 302 -11 6674 204 71 32 chr11 7776595 7776711 -143006842 + L1 LINE L1 3656 3766 -2380 1763 174 10 10 chr11 7776711 7777021 -143006532 + AluJo SINE Alu 1 310 -2 6674 204 71 32 chr11 7777021 7778098 -143005455 + L1 LINE L1 3766 4965 -1181 409 309 65 29 chr11 7779070 7779305 -143004248 - MIR SINE MIR -17 245 3 204 331 71 47 chr11 7780162 7780289 -143003264 - L2 LINE L2 -829 2485 2356 2122 107 3 13 chr11 7780292 7780592 -143002961 - AluSx SINE Alu -15 297 1 2047 134 3 19 chr11 7782051 7782358 -143001195 - AluSx SINE Alu -10 302 1 2244 182 8 0 chr11 7784428 7784830 -142998723 + MLT1C LTR MaLR 1 405 -62 2005 170 28 19 chr11 7784982 7785486 -142998067 + MLT2A2 LTR ERVL 1 508 -46 6763 36 21 0 chr11 7785486 7786354 -142997199 + L1P LINE L1 3720 4605 -1541 547 282 81 33 chr11 7786373 7786652 -142996901 - L1MEc LINE L1 -4772 1347 1020 246 266 79 14 chr11 7786663 7786802 -142996751 - L1MEc LINE L1 -5099 971 824 231 333 0 0 chr11 7787626 7787686 -142995867 - L2 LINE L2 -257 3056 2997 319 224 0 0 chr11 7787769 7787827 -142995726 + L2 LINE L2 3244 3301 -12 4316 71 0 17 chr11 7787969 7788546 -142995007 + L1PA8 LINE L1 5603 6169 -3 345 238 153 0 chr11 7788593 7788753 -142994800 - MER20B DNA MER1_type -4 215 31 2102 99 34 0 chr11 7789360 7789653 -142993900 + AluY SINE Alu 1 303 -8 5712 135 113 5 chr11 7790023 7790638 -142992915 + Tigger3b DNA MER2_type 1 548 -2480 1689 168 7 11 chr11 7790638 7790912 -142992641 + AluJb SINE Alu 1 273 -39 5712 135 113 5 chr11 7790912 7791407 -142992146 + Tigger3b DNA MER2_type 548 1231 0 849 281 165 5 chr11 7792372 7792803 -142990750 + LTR33 LTR ERVL 1 500 -21 40 101 0 0 chr11 7792870 7793008 -142990545 + AT_rich Low_complexity Low_complexity 1 138 0 183 100 0 0 chr11 7793081 7793111 -142990442 + (TA)n Simple_repeat Simple_repeat 2 31 0 706 107 157 112 chr11 7793111 7793204 -142990349 + Tigger3(Golem) DNA MER2_type 2397 2484 -545 1784 167 0 11 chr11 7793204 7793480 -142990073 + AluJb SINE Alu 1 273 -39 706 107 157 112 chr11 7793480 7793628 -142989925 + Tigger3(Golem) DNA MER2_type 2484 2649 -380 1041 123 0 0 chr11 7793628 7793807 -142989746 + (TA)n Simple_repeat Simple_repeat 2 180 0 370 341 54 48 chr11 7794226 7794477 -142989076 + L2 LINE L2 1959 2214 -1100 1140 200 82 53 chr11 7794477 7794832 -142988721 - MLT1A1 LTR MaLR 0 365 1 370 341 54 48 chr11 7794832 7794911 -142988642 + L2 LINE L2 2214 2291 -1023 2339 78 14 0 chr11 7795439 7795609 -142987944 - AluY SINE Alu -12 299 122 333 0 0 0 chr11 7795609 7795646 -142987907 + (TG)n Simple_repeat Simple_repeat 2 38 0 2339 78 14 0 chr11 7795646 7795770 -142987783 - AluY SINE Alu -189 122 1 3103 218 32 5 chr11 7795912 7796664 -142986889 - L1MB8 LINE L1 -1 6177 5406 1152 307 50 12 chr11 7797308 7797790 -142985763 + MLT1H1 LTR MaLR 1 500 -55 498 342 58 38 chr11 7797790 7798378 -142985175 + L2 LINE L2 2665 3313 0 31422 60 2 12 chr11 7799314 7803617 -142979936 + L1PA5 LINE L1 258 4517 -1629 7678 20 0 0 chr11 7803617 7804674 -142978879 + L1PA3 LINE L1 5129 6184 0 7010 42 33 0 chr11 7804675 7805444 -142978109 + L1PA5 LINE L1 4510 5252 -902 200 59 29 0 chr11 7805444 7805478 -142978075 + (CAAA)n Simple_repeat Simple_repeat 1 35 0 7010 42 33 0 chr11 7805478 7806318 -142977235 + L1PA5 LINE L1 5252 6149 -5 1565 68 10 14 chr11 7806686 7806893 -142976660 + AluY SINE Alu 106 311 0 252 306 217 0 chr11 7807209 7807366 -142976187 + MIR SINE MIR 1 191 -71 788 282 28 5 chr11 7807369 7807582 -142975971 + MIR SINE MIR 20 237 -25 195 293 17 0 chr11 7807553 7807611 -142975942 + L2 LINE L2 3213 3271 -1 * 23 0 0 0 chr11 7807732 7807755 -142975798 + AT_rich Low_complexity Low_complexity 1 23 0 295 280 90 70 chr11 7809670 7809870 -142973683 + L2 LINE L2 2926 3129 -143 25 31 0 0 chr11 7810150 7810182 -142973371 + AT_rich Low_complexity Low_complexity 1 32 0 231 153 68 0 chr11 7810348 7810407 -142973146 - L1MA7 LINE L1 0 6291 6229 4792 160 10 29 chr11 7810407 7811270 -142972283 + LTR57-int LTR ERVL 4495 5341 -2 361 60 20 0 chr11 7811272 7811322 -142972231 + LTR57 LTR ERVL 1 51 -360 1375 221 56 20 chr11 7811323 7811821 -142971732 + L1ME1 LINE L1 4859 5374 -772 543 139 16 16 chr11 7811820 7811949 -142971604 + L1MDa LINE L1 2424 2552 -3988 * 37 81 0 0 chr11 7811979 7812065 -142971488 + AT_rich Low_complexity Low_complexity 1 86 0 259 159 32 0 chr11 7812065 7812128 -142971425 + L1MDa LINE L1 2488 2552 -3988 2434 240 47 6 chr11 7812197 7812917 -142970636 + L1ME1 LINE L1 5417 6166 0 21 0 0 0 chr11 7814026 7814047 -142969506 + AT_rich Low_complexity Low_complexity 1 21 0 319 325 114 42 chr11 7814331 7814568 -142968985 - L3 LINE CR1 -318 1259 1006 332 316 107 25 chr11 7814594 7814790 -142968763 + MIR SINE MIR 21 232 -30 5406 203 5 5 chr11 7815188 7816273 -142967280 + L1PA12 LINE L1 610 1707 -5874 234 0 0 0 chr11 7816276 7816302 -142967251 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 9987 200 11 11 chr11 7816307 7818623 -142964930 + L1PA12 LINE L1 2454 4770 -2814 2102 202 259 18 chr11 7819425 7820270 -142963283 + L1MA9 LINE L1 3324 4372 -1774 1994 138 17 3 chr11 7820298 7820588 -142962965 + AluSg SINE Alu 6 299 -11 2271 123 0 0 chr11 7820591 7820901 -142962652 + AluSg SINE Alu 1 310 0 642 222 31 43 chr11 7820901 7821150 -142962403 + L1MA4 LINE L1 6060 6295 -5 593 210 13 49 chr11 7821154 7821222 -142962331 + L1MA9 LINE L1 4356 4425 -1721 1947 159 7 7 chr11 7821222 7821523 -142962030 - AluSx SINE Alu -11 301 1 593 210 13 49 chr11 7821523 7821756 -142961797 + L1MA9 LINE L1 4425 4808 -1338 * 3075 147 16 96 chr11 7821747 7822488 -142961065 + L1MB3 LINE L1 5416 6097 -86 1177 126 16 16 chr11 7822488 7822662 -142960891 - AluSp SINE Alu -1 312 136 438 114 34 0 chr11 7822662 7822750 -142960803 + L1MB2 LINE L1 6078 6168 -3 2151 203 30 59 chr11 7822774 7823379 -142960174 + L1MA9 LINE L1 4794 5415 -897 16118 49 6 2 chr11 7823379 7826158 -142957395 + L1PA5 LINE L1 3375 6154 0 2151 203 30 59 chr11 7826158 7826485 -142957068 + L1MA9 LINE L1 5415 5750 -562 186 71 0 0 chr11 7826485 7826513 -142957040 + (TG)n Simple_repeat Simple_repeat 2 29 0 2151 203 30 59 chr11 7826513 7826982 -142956571 + L1MA9 LINE L1 5750 6128 -184 2073 125 6 6 chr11 7826982 7827317 -142956236 - L1MA3 LINE L1 0 6305 5971 2151 203 30 59 chr11 7827317 7827464 -142956089 + L1MA9 LINE L1 6128 6278 -34 2294 215 70 25 chr11 7827482 7828278 -142955275 - L1MDa LINE L1 -4692 1848 1017 4292 161 29 29 chr11 7828769 7829552 -142954001 + LTR39 LTR ERV1 1 783 0 788 310 20 55 chr11 7829577 7829977 -142953576 - L1MDa LINE L1 -6138 402 17 278 306 34 41 chr11 7830235 7830382 -142953171 + MIR SINE MIR 100 245 -17 22 70 0 0 chr11 7832362 7832405 -142951148 + AT_rich Low_complexity Low_complexity 1 43 0 573 250 87 23 chr11 7832418 7832590 -142950963 - MIR SINE MIR -74 188 6 1693 192 39 0 chr11 7833233 7833514 -142950039 + AluJb SINE Alu 1 292 -20 1913 138 4 4 chr11 7833522 7833798 -142949755 + AluSx SINE Alu 1 276 -36 2169 105 10 0 chr11 7834136 7834432 -142949121 + AluSg SINE Alu 1 299 -11 937 219 0 9 chr11 7834855 7835065 -142948488 + L1PA14 LINE L1 3264 3471 -2675 6807 171 19 18 chr11 7835067 7836690 -142946863 + L1PA14 LINE L1 3988 5608 -553 2330 145 6 11 chr11 7836690 7837056 -142946497 + THE1B LTR MaLR 1 364 0 6807 171 19 18 chr11 7837056 7837143 -142946410 + L1PA14 LINE L1 5608 5693 -468 2348 122 11 27 chr11 7837143 7837513 -142946040 + THE1B LTR MaLR 1 364 0 6807 171 19 18 chr11 7837513 7837942 -142945611 + L1PA14 LINE L1 5693 6157 -4 2080 142 0 3 chr11 7837952 7838254 -142945299 + AluSx SINE Alu 1 301 -11 255 125 0 0 chr11 7838254 7838294 -142945259 + (TA)n Simple_repeat Simple_repeat 1 40 0 1008 265 53 11 chr11 7838474 7838930 -142944623 + L1M4 LINE L1 4673 5147 -999 784 218 74 10 chr11 7838932 7839209 -142944344 + MLT1A2 LTR MaLR 2 390 0 369 216 144 0 chr11 7839209 7839320 -142944233 + L1M4 LINE L1 5140 5266 -880 695 256 58 0 chr11 7839351 7839523 -142944030 + MER58A DNA MER1_type 43 224 0 289 229 0 12 chr11 7839527 7839610 -142943943 + L1M LINE L1 5263 5344 -822 412 263 136 28 chr11 7839623 7840047 -142943506 - L1M4b LINE L1 -5127 1820 1332 9531 206 85 2 chr11 7840383 7842344 -142941209 + L1M2 LINE L1 4 2127 -4722 440 333 71 71 chr11 7842353 7842679 -142940874 - MER72 LTR ERV1 -346 376 48 2527 84 21 32 chr11 7842679 7843058 -142940495 - THE1C LTR MaLR 0 375 1 440 333 71 71 chr11 7843058 7843082 -142940471 - MER72 LTR ERV1 -673 49 26 6008 173 50 10 chr11 7843113 7844931 -142938622 + L1P4 LINE L1 3868 5759 -406 5220 116 69 42 chr11 7844932 7846068 -142937485 - MER11A LTR ERVK 0 1266 1 471 63 0 0 chr11 7846070 7846133 -142937420 + L1P4 LINE L1 5757 5819 -349 20723 37 0 0 chr11 7846139 7848678 -142934875 - L1PA6 LINE L1 -2032 4114 1575 9771 55 12 2 chr11 7848678 7850701 -142932852 + L1PA6 LINE L1 4117 6154 0 6769 140 33 8 chr11 7850760 7852223 -142931330 + L1MA2 LINE L1 2469 3971 -3594 8681 143 17 9 chr11 7852224 7854812 -142928741 + L1MA2 LINE L1 5122 7723 0 403 240 70 63 chr11 7854902 7855110 -142928443 - L1M4 LINE L1 -1901 4245 4037 6875 59 22 0 chr11 7855244 7855904 -142927649 - L1PA7 LINE L1 -14 6140 5469 2422 82 0 0 chr11 7855904 7856207 -142927346 - AluY SINE Alu -8 303 1 6875 59 22 0 chr11 7856207 7856648 -142926905 - L1PA7 LINE L1 -685 5469 5039 312 308 45 50 chr11 7857319 7857517 -142926036 - L1MEd LINE L1 -5282 837 641 21 0 0 0 chr11 7857893 7857914 -142925639 + AT_rich Low_complexity Low_complexity 1 21 0 2003 119 0 10 chr11 7857914 7858208 -142925345 - AluSq SINE Alu -22 291 1 29 0 0 0 chr11 7859003 7859032 -142924521 + AT_rich Low_complexity Low_complexity 1 29 0 25 31 0 0 chr11 7859158 7859190 -142924363 + AT_rich Low_complexity Low_complexity 1 32 0 2392 304 58 27 chr11 7861601 7862524 -142921029 - L2 LINE L2 -2142 1172 221 204 288 0 0 chr11 7863626 7863685 -142919868 + L3 LINE CR1 1361 1419 -158 203 88 29 0 chr11 7864363 7864397 -142919156 + (CA)n Simple_repeat Simple_repeat 1 35 0 239 338 104 24 chr11 7864678 7864920 -142918633 + MIR SINE MIR 2 259 -3 1595 182 3 55 chr11 7865199 7865506 -142918047 + AluJo SINE Alu 2 292 -20 1562 189 3 19 chr11 7865724 7866047 -142917506 - L1MD1 LINE L1 0 6242 5925 674 251 9 48 chr11 7866047 7866176 -142917377 - L1M4 LINE L1 -3738 2408 2288 2219 119 0 10 chr11 7866176 7866487 -142917066 - AluSg SINE Alu -2 308 1 674 251 9 48 chr11 7866487 7866581 -142916972 - L1M4 LINE L1 -3858 2288 2192 957 225 22 5 chr11 7866584 7866806 -142916747 + MLT1D-int LTR MaLR 291 516 -855 528 283 29 0 chr11 7866816 7866954 -142916599 + MLT1D-int LTR MaLR 746 887 -484 1492 232 40 96 chr11 7867097 7867597 -142915956 + MLT1D-int LTR MaLR 900 1371 0 1869 195 82 47 chr11 7867597 7868085 -142915468 + MLT1D LTR MaLR 1 505 0 360 216 74 99 chr11 7868146 7868308 -142915245 - L2 LINE L2 0 3313 3156 430 310 60 8 chr11 7868471 7868776 -142914777 + L1P2 LINE L1 5509 5835 -319 205 240 13 27 chr11 7868990 7869065 -142914488 + T-rich Low_complexity Low_complexity 2 75 0 344 182 0 0 chr11 7869467 7869522 -142914031 + MER5A DNA MER1_type 133 187 -2 705 249 29 0 chr11 7869527 7869700 -142913853 - MER5B DNA MER1_type 0 178 1 726 239 34 29 chr11 7869988 7870193 -142913360 - L2 LINE L2 0 3313 3108 210 204 20 0 chr11 7870268 7870317 -142913236 + (TA)n Simple_repeat Simple_repeat 2 51 0 279 316 44 53 chr11 7870355 7870469 -142913084 - MIR SINE MIR -133 129 17 2273 101 0 0 chr11 7870481 7870778 -142912775 - AluSg SINE Alu -13 297 1 560 121 30 0 chr11 7871143 7871275 -142912278 + (TA)n Simple_repeat Simple_repeat 1 136 0 2072 269 87 56 chr11 7871287 7872220 -142911333 - HERV16 LTR ERVL -2422 2574 1613 1535 303 35 0 chr11 7872249 7872705 -142910848 - HERV16 LTR ERVL -3598 1398 927 1468 304 55 16 chr11 7872934 7873499 -142910054 - HERV16 LTR ERVL -4372 624 38 1265 214 33 63 chr11 7873518 7873688 -142909865 + MLT1A2 LTR MaLR 1 175 -199 363 23 0 0 chr11 7873688 7873732 -142909821 + (TC)n Simple_repeat Simple_repeat 1 44 0 1265 214 33 63 chr11 7873732 7873926 -142909627 + MLT1A2 LTR MaLR 175 354 -20 786 300 45 16 chr11 7873925 7874172 -142909381 - LTR16A LTR ERVL -18 432 179 * 547 226 132 0 chr11 7875007 7875197 -142908356 - L1ME3A LINE L1 -220 5950 5736 456 245 35 14 chr11 7875244 7875387 -142908166 - L1M4 LINE L1 -3619 2527 2382 4684 171 51 17 chr11 7875462 7876821 -142906732 - L1PA16 LINE L1 -12 6154 4740 2753 173 26 116 chr11 7876819 7877212 -142906341 + L1PA14 LINE L1 5437 5729 -432 * 7079 47 18 0 chr11 7877212 7878356 -142905197 + L1PA6 LINE L1 4984 6150 -4 2753 173 26 116 chr11 7878356 7878730 -142904823 + L1PA14 LINE L1 5729 6135 -26 886 269 63 12 chr11 7878749 7879132 -142904421 + MER115 DNA AcHobo 238 693 0 254 293 40 30 chr11 7879144 7879243 -142904310 + L2 LINE L2 2868 2967 -305 409 305 65 45 chr11 7879270 7879886 -142903667 + L1MC/D LINE L1 4062 4689 -1457 2179 141 20 0 chr11 7880115 7880456 -142903097 + MER7A DNA MER2_type 1 346 0 24 0 0 0 chr11 7880558 7880582 -142902971 + AT_rich Low_complexity Low_complexity 1 24 0 449 271 87 64 chr11 7880622 7881136 -142902417 + L1MC/D LINE L1 5120 5653 -877 2026 130 0 35 chr11 7881136 7881452 -142902101 - AluSc SINE Alu -4 305 1 449 271 87 64 chr11 7881452 7881586 -142901967 + L1MC/D LINE L1 5653 5783 -747 1788 58 4 0 chr11 7881633 7881859 -142901694 - L1PA12 LINE L1 -4 6164 5938 413 391 66 0 chr11 7882186 7882383 -142901170 + L2 LINE L2 3061 3270 -2 2299 95 13 0 chr11 7884908 7885214 -142898339 - AluSg SINE Alu 0 310 1 335 280 51 34 chr11 7885757 7885875 -142897678 + L2 LINE L2 3149 3268 -4 33 25 0 0 chr11 7887834 7887874 -142895679 + AT_rich Low_complexity Low_complexity 1 40 0 257 301 96 0 chr11 7889095 7889178 -142894375 + MIR SINE MIR 84 174 -88 216 0 0 0 chr11 7890221 7890245 -142893308 + (TC)n Simple_repeat Simple_repeat 1 24 0 228 163 0 0 chr11 7890345 7890388 -142893165 + CT-rich Low_complexity Low_complexity 1 43 0 25 65 0 0 chr11 7891020 7891066 -142892487 + AT_rich Low_complexity Low_complexity 1 46 0 637 305 147 13 chr11 7891136 7891611 -142891942 + L1ME4a LINE L1 5330 5868 -253 212 237 68 0 chr11 7892090 7892149 -142891404 + L2 LINE L2 3210 3272 0 266 274 147 10 chr11 7892234 7892336 -142891217 + MIR3 SINE MIR 3 118 -90 430 333 59 34 chr11 7892639 7892843 -142890710 - MIR SINE MIR -10 252 44 279 157 100 14 chr11 7892942 7893012 -142890541 + L1MA9 LINE L1 6215 6290 -22 2452 58 6 12 chr11 7893920 7894246 -142889307 - L1P3 LINE L1 -457 5715 5392 2718 46 6 6 chr11 7894246 7894583 -142888970 + L1PA8 LINE L1 5818 6165 -7 21 57 0 0 chr11 7894759 7894794 -142888759 + AT_rich Low_complexity Low_complexity 1 35 0 192 258 0 45 chr11 7895180 7895246 -142888307 - L2 LINE L2 -340 2974 2912 42539 35 21 2 chr11 7895295 7901331 -142882222 + L1PA2 LINE L1 1 6155 0 380 358 72 21 chr11 7901345 7901624 -142881929 - L2 LINE L2 -458 2856 2564 2234 89 10 3 chr11 7901633 7901936 -142881617 - AluSc SINE Alu -4 305 1 438 292 42 58 chr11 7901964 7902224 -142881329 - L1MEc LINE L1 -3984 2412 2157 980 163 52 0 chr11 7902280 7902433 -142881120 - AluJ SINE Alu -22 290 130 1473 74 0 16 chr11 7902443 7902632 -142880921 + AluY SINE Alu 1 186 -125 744 157 8 0 chr11 7902770 7902891 -142880662 - AluJ SINE Alu -180 122 1 2023 141 0 0 chr11 7903097 7903381 -142880172 + AluSx SINE Alu 1 284 -28 426 337 75 33 chr11 7904468 7904800 -142878753 - HAL1 LINE L1 -1054 1453 1108 2550 70 0 3 chr11 7904950 7905262 -142878291 - AluY SINE Alu 0 311 1 352 321 47 26 chr11 7906383 7906573 -142876980 + L1 LINE L1 3623 3816 -2330 250 169 31 0 chr11 7907159 7907224 -142876329 + (TA)n Simple_repeat Simple_repeat 2 68 0 253 197 98 0 chr11 7907706 7907767 -142875786 - L1ME LINE L1 -474 5647 5581 1661 285 106 29 chr11 7908080 7909153 -142874400 + HAL1 LINE L1 1351 2506 -1 2110 173 32 42 chr11 7909399 7909948 -142873605 + L1MB7 LINE L1 4902 5451 -733 1927 249 54 33 chr11 7909933 7910448 -142873105 + L1ME4a LINE L1 1 526 -6333 * 554 256 5 46 chr11 7910448 7910667 -142872886 + L1ME4a LINE L1 2853 3062 -3897 1141 167 19 0 chr11 7910684 7910900 -142872653 - L1MB7 LINE L1 -317 5867 5648 225 217 65 0 chr11 7910898 7910944 -142872609 - L1M4b LINE L1 -6810 49 1 * 753 152 10 76 chr11 7910929 7911127 -142872426 - L1MB7 LINE L1 -733 5451 5267 2770 216 47 5 chr11 7911167 7911912 -142871641 + L1ME4a LINE L1 3042 3817 -3140 1987 165 31 21 chr11 7911889 7912308 -142871245 + L1MB7 LINE L1 6370 6792 -203 * 262 102 82 0 chr11 7912305 7912354 -142871199 - L1MB8 LINE L1 -236 5942 5890 * 2720 125 14 14 chr11 7913206 7913630 -142869923 - MSTA LTR MaLR -1 427 4 308 301 78 39 chr11 7914459 7914665 -142868888 + L1ME4a LINE L1 5580 5793 -1164 182 89 54 18 chr11 7914923 7914979 -142868574 + (TA)n Simple_repeat Simple_repeat 2 59 0 654 291 134 41 chr11 7915022 7915665 -142867888 + L1ME4a LINE L1 6187 6886 -46 1575 168 14 25 chr11 7916076 7916390 -142867163 + AluJo SINE Alu 1 311 0 218 105 26 0 chr11 7916765 7916803 -142866750 + (CA)n Simple_repeat Simple_repeat 1 39 0 886 274 82 50 chr11 7916803 7917219 -142866334 + LTR33 LTR ERVL 89 517 -4 4281 137 150 118 chr11 7917736 7918968 -142864585 - MER52C LTR ERV1 0 1278 8 180 158 0 0 chr11 7919250 7919288 -142864265 + (TG)n Simple_repeat Simple_repeat 1 38 0 519 318 92 32 chr11 7919311 7919896 -142863657 + L1M4 LINE L1 2681 3300 -2846 22 0 0 0 chr11 7920633 7920655 -142862898 + AT_rich Low_complexity Low_complexity 1 22 0 1735 154 37 20 chr11 7920821 7921120 -142862433 + AluJb SINE Alu 4 307 -5 587 333 60 32 chr11 7921366 7921898 -142861655 + HAL1 LINE L1 1138 1684 -823 1543 109 0 0 chr11 7921902 7922112 -142861441 + AluY SINE Alu 102 311 0 1990 167 0 0 chr11 7922390 7922702 -142860851 - AluSx SINE Alu 0 312 1 29 70 0 0 chr11 7922753 7922810 -142860743 + AT_rich Low_complexity Low_complexity 1 57 0 29 0 0 0 chr11 8123107 8123136 -142660417 + GC_rich Low_complexity Low_complexity 1 29 0 26 114 0 0 chr11 8123553 8123684 -142659869 + GC_rich Low_complexity Low_complexity 1 131 0 317 271 55 64 chr11 8124767 8124985 -142658568 + L1 LINE L1 3130 3345 -2801 241 106 0 85 chr11 8125044 8125091 -142658462 + tRNA-Ile-ATT tRNA tRNA 7 49 -28 2367 87 0 0 chr11 8125144 8125453 -142658100 - AluSg SINE Alu -1 309 1 348 227 10 41 chr11 8125613 8125710 -142657843 - MIR SINE MIR -102 160 67 226 383 12 0 chr11 8125800 8125881 -142657672 - L2 LINE L2 -87 3185 3104 586 283 69 43 chr11 8125975 8126208 -142657345 - L2 LINE L2 0 3313 3075 336 288 45 20 chr11 8126226 8126424 -142657129 - AluSp SINE Alu 0 303 101 23 0 0 0 chr11 8126509 8126532 -142657021 + GC_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr11 8126633 8126654 -142656899 + AT_rich Low_complexity Low_complexity 1 21 0 2193 101 0 0 chr11 8126998 8127294 -142656259 + AluSx SINE Alu 1 296 -16 427 189 42 32 chr11 8127376 8127471 -142656082 - MER21B LTR ERV1 -767 96 1 1209 101 43 14 chr11 8127875 8128082 -142655471 + AluSp SINE Alu 1 213 -100 1905 123 0 7 chr11 8128465 8128750 -142654803 - AluSx SINE Alu -15 297 15 822 189 6 0 chr11 8128756 8128915 -142654638 + AluJb SINE Alu 146 305 -7 2282 96 3 0 chr11 8128917 8129229 -142654324 + AluSp SINE Alu 1 313 0 576 197 118 8 chr11 8129238 8129365 -142654188 - MLT1A1 LTR MaLR -224 141 1 2422 169 11 20 chr11 8129448 8129686 -142653867 - Tigger2a DNA MER2_type -2274 434 200 2123 109 0 0 chr11 8129686 8129980 -142653573 - AluSg SINE Alu -16 294 1 2422 169 11 20 chr11 8129980 8130179 -142653374 - Tigger2a DNA MER2_type -2508 200 1 1988 108 3 3 chr11 8130341 8130629 -142652924 - AluSx SINE Alu -12 300 13 3620 181 33 41 chr11 8130733 8131035 -142652518 + LTR39 LTR ERV1 1 304 -479 2080 110 0 7 chr11 8131035 8131336 -142652217 + AluSc SINE Alu 1 299 -10 3620 181 33 41 chr11 8131336 8131653 -142651900 + LTR39 LTR ERV1 304 615 -168 2452 40 3 3 chr11 8131653 8131952 -142651601 + AluY SINE Alu 1 299 -12 3620 181 33 41 chr11 8131952 8132120 -142651433 + LTR39 LTR ERV1 615 783 0 531 221 82 0 chr11 8132270 8132392 -142651161 - MER4D LTR ERV1 -8 895 764 1438 143 44 8 chr11 8132405 8132656 -142650897 - MER4D LTR ERV1 -385 518 259 2184 103 0 0 chr11 8132803 8133103 -142650450 - AluSx SINE Alu -10 302 3 2488 131 144 51 chr11 8133128 8133357 -142650196 + MLT2B1 LTR ERVL 4 210 -310 2228 104 13 0 chr11 8133357 8133665 -142649888 - AluSx SINE Alu 0 312 1 2488 131 144 51 chr11 8133665 8133908 -142649645 + MLT2B1 LTR ERVL 210 520 0 357 344 114 30 chr11 8133908 8134038 -142649515 - L1MC4a LINE L1 -1649 6228 6110 2007 100 48 0 chr11 8134038 8134328 -142649225 - AluSg SINE Alu -3 307 4 357 344 114 30 chr11 8134328 8134459 -142649094 - L1MC4a LINE L1 -1767 6110 5945 370 240 10 10 chr11 8134464 8134564 -142648989 - L1MC4a LINE L1 -1984 5893 5794 216 0 0 0 chr11 8134564 8134588 -142648965 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2015 81 26 0 chr11 8134595 8134867 -142648686 - AluSg SINE Alu -31 279 1 219 178 20 69 chr11 8135489 8135590 -142647963 + (CCCCG)n Simple_repeat Simple_repeat 2 97 0 259 268 8 55 chr11 8135753 8135880 -142647673 + G-rich Low_complexity Low_complexity 2 122 0 501 253 42 57 chr11 8135963 8136170 -142647383 - L1MC4a LINE L1 -1570 4645 4441 1553 153 37 48 chr11 8136170 8136465 -142647088 + AluJo SINE Alu 1 292 -20 501 253 42 57 chr11 8136465 8136522 -142647031 - L1MC4a LINE L1 -1774 4441 4385 706 289 107 35 chr11 8136543 8136861 -142646692 - MLT1I LTR MaLR 0 409 69 13321 125 45 11 chr11 8136921 8138982 -142644571 + Tigger1 DNA MER2_type 1 2131 -287 1675 103 53 14 chr11 8139468 8139750 -142643803 - AluY SINE Alu -18 293 1 245 186 0 43 chr11 8139750 8139820 -142643733 - L1MC4a LINE L1 -2205 4010 3944 441 324 81 50 chr11 8139958 8140163 -142643390 - L1MC4a LINE L1 -4135 2080 1883 189 0 0 0 chr11 8140163 8140184 -142643369 + (TC)n Simple_repeat Simple_repeat 2 22 0 183 80 0 0 chr11 8140183 8140208 -142643345 + (TA)n Simple_repeat Simple_repeat 2 26 0 * 441 324 81 50 chr11 8140184 8140323 -142643230 - L1MC4a LINE L1 -4332 1883 1750 405 258 70 48 chr11 8140450 8140679 -142642874 - L1MC4a LINE L1 -4766 1630 1397 396 297 73 50 chr11 8140912 8141215 -142642338 - L3 LINE CR1 -458 1119 810 1760 149 7 10 chr11 8141383 8141672 -142641881 + AluSx SINE Alu 1 288 -24 1640 171 18 0 chr11 8141707 8141988 -142641565 + AluJo SINE Alu 1 286 -26 351 65 0 0 chr11 8141988 8142034 -142641519 + (CAT)n Simple_repeat Simple_repeat 2 47 0 207 0 0 0 chr11 8142402 8142425 -142641128 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 2025 109 3 0 chr11 8142791 8143116 -142640437 + AluSp SINE Alu 1 326 0 743 150 39 8 chr11 8143581 8143708 -142639845 + FLAM_C SINE Alu 1 131 -2 2040 91 10 29 chr11 8143729 8144037 -142639516 + AluSg SINE Alu 1 302 -8 538 248 26 0 chr11 8144039 8144152 -142639401 + MER21B LTR ERV1 18 133 -730 2402 201 34 45 chr11 8144190 8144371 -142639182 + MER21B LTR ERV1 136 317 -546 1717 109 113 8 chr11 8144371 8144637 -142638916 + AluSg SINE Alu 1 294 -16 2402 201 34 45 chr11 8144637 8145115 -142638438 + MER21B LTR ERV1 317 755 -108 255 150 25 0 chr11 8145117 8145157 -142638396 - Alu SINE Alu -259 41 1 874 182 96 0 chr11 8145244 8145431 -142638122 + MER39 LTR ERV1 1 205 -502 4152 166 67 44 chr11 8145598 8145620 -142637933 - L1M4 LINE L1 -998 5148 5128 1301 171 114 11 chr11 8145620 8145900 -142637653 - AluJo SINE Alu -3 309 1 4152 166 67 44 chr11 8145900 8146714 -142636839 - L1M4 LINE L1 -1018 5128 4283 612 254 0 0 chr11 8146714 8146855 -142636698 - FLAM_A SINE Alu 0 141 1 4152 166 67 44 chr11 8146855 8147009 -142636544 - L1M4 LINE L1 -1863 4283 4134 186 300 117 50 chr11 8147072 8147192 -142636361 - MIR SINE MIR -63 145 18 298 341 225 0 chr11 8148271 8148573 -142634980 + L2 LINE L2 2459 2828 -486 753 320 119 0 chr11 8148576 8148854 -142634699 - HERV16 LTR ERVL -2146 2850 2540 1429 320 79 9 chr11 8148854 8149425 -142634128 + ERVL LTR ERVL 2895 3505 -2259 3103 296 67 48 chr11 8149427 8151094 -142632459 + ERVL LTR ERVL 3357 5383 -381 905 281 139 19 chr11 8151258 8151632 -142631921 + LTR16B LTR ERVL 44 462 -2 1597 101 9 4 chr11 8151686 8151914 -142631639 + AluSc SINE Alu 1 229 -80 1966 125 10 3 chr11 8151949 8152237 -142631316 + AluJb SINE Alu 1 290 -22 1292 67 0 22 chr11 8152574 8152754 -142630799 + AluY SINE Alu 118 293 -18 219 121 0 0 chr11 8152823 8152856 -142630697 + MIR SINE MIR 190 222 -40 * 610 207 67 7 chr11 8152841 8152991 -142630562 + L2 LINE L2 2671 2829 -485 522 297 71 65 chr11 8153021 8153331 -142630222 - MLT1I LTR MaLR -27 382 71 381 223 204 0 chr11 8153414 8153571 -142629982 + L2 LINE L2 2839 3027 -286 263 266 219 41 chr11 8153586 8153755 -142629798 - MIR SINE MIR -12 250 52 1975 104 11 0 chr11 8153764 8154042 -142629511 + AluSx SINE Alu 17 297 -15 1990 103 10 13 chr11 8154053 8154365 -142629188 + AluY SINE Alu 1 311 0 1376 61 17 0 chr11 8154365 8154546 -142629007 + AluSg/x SINE Alu 127 310 0 193 311 97 19 chr11 8154815 8154918 -142628635 + L2 LINE L2 2656 2766 -548 607 183 7 51 chr11 8154966 8155103 -142628450 - FLAM_C SINE Alu -11 132 2 323 310 71 56 chr11 8155228 8155425 -142628128 + L2 LINE L2 2890 3089 -183 1911 116 34 0 chr11 8155431 8155723 -142627830 - AluSc SINE Alu -6 303 2 270 0 0 0 chr11 8155724 8155754 -142627799 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 1789 153 4 0 chr11 8155754 8156035 -142627518 - AluSx SINE Alu -30 282 1 1971 101 14 3 chr11 8156405 8156692 -142626861 + AluSq SINE Alu 5 294 -19 436 273 232 0 chr11 8156697 8156895 -142626658 - MIR SINE MIR -10 252 9 393 240 51 52 chr11 8157159 8157316 -142626237 + MIR3 SINE MIR 1 159 -61 558 78 0 11 chr11 8157714 8157804 -142625749 - L1PB1 LINE L1 -3 6148 6060 4438 158 48 4 chr11 8157805 8158898 -142624655 - L1PB1 LINE L1 -154 5997 4852 4083 177 99 17 chr11 8158918 8159873 -142623680 + L1MB7 LINE L1 5106 6148 -36 2043 116 0 0 chr11 8159873 8160181 -142623372 - AluSx SINE Alu 0 308 1 4083 177 99 17 chr11 8160181 8160222 -142623331 + L1MB7 LINE L1 6148 6184 0 500 216 0 0 chr11 8160305 8160393 -142623160 + MER81 DNA DNA 27 114 0 421 232 29 31 chr11 8160763 8160925 -142622628 + MLT2E LTR ERVL 201 576 -87 1158 106 0 0 chr11 8161035 8161196 -142622357 - AluSg/x SINE Alu -17 295 135 384 239 103 49 chr11 8161856 8162040 -142621513 - MARNA DNA Mariner -74 512 319 765 134 164 0 chr11 8162041 8162175 -142621378 - MLT1A2 LTR MaLR 0 374 219 4519 139 31 62 chr11 8162176 8162428 -142621125 - L1M1 LINE L1 -658 5645 5387 461 63 0 0 chr11 8162428 8162491 -142621062 - L1PA6 LINE L1 -2 6152 6090 4519 139 31 62 chr11 8162491 8163221 -142620332 - L1M1 LINE L1 -916 5387 4722 1799 161 0 16 chr11 8163221 8163525 -142620028 - AluJb SINE Alu -13 299 1 4519 139 31 62 chr11 8163525 8163798 -142619755 - L1M1 LINE L1 -1581 4722 4442 620 241 161 6 chr11 8164163 8164337 -142619216 - MIR SINE MIR -1 261 61 500 236 103 10 chr11 8165473 8165676 -142617877 - L1ME4a LINE L1 -59 6062 5841 722 114 19 0 chr11 8165851 8165956 -142617597 + AluSp SINE Alu 2 108 -205 517 238 82 41 chr11 8165957 8166201 -142617352 - HAL1 LINE L1 -1162 1345 1092 * 2574 232 70 64 chr11 8166195 8166434 -142617119 - L1ME3A LINE L1 -1 6169 5933 988 161 15 65 chr11 8166434 8166556 -142616997 - MER5A DNA MER1_type 0 189 79 2130 112 7 3 chr11 8166556 8166861 -142616692 - AluSg SINE Alu -4 306 1 988 161 15 65 chr11 8166861 8166937 -142616616 - MER5A DNA MER1_type -110 79 1 2574 232 70 64 chr11 8166937 8167046 -142616507 - L1ME3A LINE L1 -237 5933 5826 1735 139 52 14 chr11 8167046 8167333 -142616220 - AluJb SINE Alu -14 298 1 2574 232 70 64 chr11 8167333 8168219 -142615334 - L1ME3A LINE L1 -344 5826 4925 723 257 70 43 chr11 8168281 8168357 -142615196 - L1ME3A LINE L1 -1226 4920 4848 2131 128 0 0 chr11 8168357 8168661 -142614892 + AluSx SINE Alu 1 304 -8 723 257 70 43 chr11 8168661 8168911 -142614642 - L1ME3A LINE L1 -1298 4848 4585 795 132 47 0 chr11 8169091 8169220 -142614333 + AluJb SINE Alu 2 136 -176 2317 30 3 30 chr11 8169229 8169530 -142614023 + AluY SINE Alu 1 293 -18 272 263 90 43 chr11 8169999 8170131 -142613422 + MIR SINE MIR 35 172 -42 1999 117 10 10 chr11 8170474 8170773 -142612780 - AluSx SINE Alu -11 301 3 1826 174 0 28 chr11 8171120 8171441 -142612112 + AluJo SINE Alu 1 312 0 2092 141 3 0 chr11 8172212 8172516 -142611037 - AluSx SINE Alu -7 305 1 588 187 7 113 chr11 8172556 8172663 -142610890 + AluJo SINE Alu 3 120 -192 2215 69 0 31 chr11 8172663 8172986 -142610567 - AluY SINE Alu 0 314 1 2320 92 3 0 chr11 8172991 8173284 -142610269 - AluSq SINE Alu -19 294 1 588 187 7 113 chr11 8173284 8173319 -142610234 + AluJo SINE Alu 124 136 -176 316 235 71 0 chr11 8173411 8173496 -142610057 - MIR3 SINE MIR -7 201 111 3210 77 9 14 chr11 8173701 8174141 -142609412 + L1PA7 LINE L1 5717 6154 0 2303 117 0 0 chr11 8174170 8174468 -142609085 + AluSx SINE Alu 1 298 -14 2490 66 0 3 chr11 8174481 8174783 -142608770 + AluY SINE Alu 1 301 -10 700 107 0 19 chr11 8174810 8174913 -142608640 - AluJb SINE Alu -10 302 202 527 167 0 94 chr11 8174939 8174967 -142608586 - L1MC4 LINE L1 -13 8029 8000 1887 113 84 0 chr11 8174967 8175241 -142608312 + AluSg SINE Alu 1 297 -13 527 167 0 94 chr11 8175241 8175350 -142608203 - L1MC4 LINE L1 -42 8000 7905 2526 170 42 35 chr11 8175350 8175782 -142607771 - L1MB8 LINE L1 -6 6172 5734 2380 100 7 0 chr11 8175782 8176083 -142607470 - AluSq SINE Alu -10 303 1 2526 170 42 35 chr11 8176083 8176221 -142607332 - L1MB8 LINE L1 -444 5734 5598 2113 120 3 13 chr11 8176222 8176383 -142607170 - AluSq SINE Alu -15 298 140 2218 110 0 3 chr11 8176383 8176674 -142606879 - AluSg SINE Alu -15 295 6 2113 120 3 13 chr11 8176674 8176813 -142606740 - AluSq SINE Alu -173 140 1 827 137 36 7 chr11 8176813 8176952 -142606601 - AluJb SINE Alu -169 143 1 873 155 83 28 chr11 8176953 8177134 -142606419 - L1MB8 LINE L1 -579 5605 5415 215 31 31 0 chr11 8177148 8177180 -142606373 + (TTTTA)n Simple_repeat Simple_repeat 3 35 0 2165 119 0 0 chr11 8177184 8177470 -142606083 - AluSg SINE Alu -24 286 1 636 178 6 118 chr11 8177912 8178081 -142605472 - AluJo/FRAM SINE Alu -16 286 137 2488 73 7 0 chr11 8178081 8178381 -142605172 - AluSp SINE Alu -7 306 5 1404 175 144 0 chr11 8178382 8178639 -142604914 - AluJb SINE Alu -7 295 2 645 203 24 8 chr11 8178656 8178779 -142604774 - FLAM_C SINE Alu -7 126 2 1666 183 0 10 chr11 8179108 8179408 -142604145 + AluJo SINE Alu 1 297 -15 2122 128 10 0 chr11 8179596 8179894 -142603659 - AluSx SINE Alu -11 301 1 2304 90 7 3 chr11 8179943 8180243 -142603310 - AluSc SINE Alu -8 301 1 2426 80 0 0 chr11 8180251 8180553 -142603000 - AluY SINE Alu -9 302 1 2370 96 3 3 chr11 8181096 8181409 -142602144 - AluSq SINE Alu 0 313 1 217 215 154 0 chr11 8181474 8181539 -142602014 - MIR3 SINE MIR -3 205 131 193 299 75 0 chr11 8181618 8181685 -142601868 - MIR SINE MIR -96 112 41 33 0 0 0 chr11 8182199 8182232 -142601321 + AT_rich Low_complexity Low_complexity 1 33 0 1462 190 34 24 chr11 8182274 8182411 -142601142 + AluJb SINE Alu 1 135 -177 2339 80 3 7 chr11 8182411 8182737 -142600816 + AluSq SINE Alu 1 325 0 1462 190 34 24 chr11 8182737 8182893 -142600660 + AluJb SINE Alu 135 298 -14 2292 60 35 3 chr11 8183058 8183341 -142600212 - AluY SINE Alu -19 292 1 654 176 61 8 chr11 8183525 8183656 -142599897 + MER49 LTR ERV1 1 138 -785 1277 178 4 17 chr11 8183657 8183888 -142599665 - AluJb SINE Alu -44 268 41 261 229 0 0 chr11 8183898 8183946 -142599607 - MER4D LTR ERV1 -759 144 97 * 429 110 74 7 chr11 8183926 8184014 -142599539 + MER49 LTR ERV1 140 223 -680 1755 148 24 3 chr11 8184014 8184305 -142599248 + AluJb SINE Alu 1 297 -15 429 110 74 7 chr11 8184305 8184351 -142599202 + MER49 LTR ERV1 223 264 -639 2344 86 3 0 chr11 8184451 8184742 -142598811 - AluSp SINE Alu -21 292 1 640 295 25 38 chr11 8184752 8185034 -142598519 - L2 LINE L2 -244 3069 2793 948 184 50 6 chr11 8185034 8185213 -142598340 + MER5A DNA MER1_type 1 187 -2 1735 177 0 0 chr11 8185748 8186047 -142597506 - AluJb SINE Alu -13 299 1 2112 99 48 7 chr11 8186055 8186349 -142597204 - AluSq SINE Alu -7 306 1 1528 138 0 0 chr11 8186713 8186843 -142596710 + AluJo SINE Alu 1 133 -179 1892 152 20 3 chr11 8186843 8187139 -142596414 + AluJo SINE Alu 1 301 -11 1528 138 0 0 chr11 8187139 8187226 -142596327 + AluJo SINE Alu 132 218 -94 216 0 0 0 chr11 8187261 8187285 -142596268 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 2290 110 0 3 chr11 8187343 8187652 -142595901 + AluSq SINE Alu 1 308 -5 2182 80 28 0 chr11 8187761 8188047 -142595506 + AluY SINE Alu 1 294 -17 276 206 0 98 chr11 8188048 8188150 -142595403 - L1ME3 LINE L1 -16 6146 6055 588 285 65 40 chr11 8188489 8188582 -142594971 - L1ME3 LINE L1 -747 5399 5310 2090 107 14 7 chr11 8188582 8188871 -142594682 - AluSx SINE Alu -21 291 1 588 285 65 40 chr11 8188871 8189040 -142594513 - L1ME3 LINE L1 -836 5310 5417 2110 101 3 17 chr11 8189040 8189337 -142594216 - AluSq SINE Alu -20 293 1 588 285 65 40 chr11 8189337 8189543 -142594010 - L1ME3 LINE L1 -728 5418 5219 21 0 0 0 chr11 8189619 8189640 -142593913 + AT_rich Low_complexity Low_complexity 1 21 0 208 241 19 0 chr11 8189675 8189729 -142593824 + CT-rich Low_complexity Low_complexity 4 58 0 720 163 0 8 chr11 8189729 8189852 -142593701 - FLAM_A SINE Alu 0 142 21 2224 127 3 0 chr11 8189914 8190221 -142593332 - AluSq SINE Alu -4 309 2 1833 142 62 0 chr11 8190225 8190513 -142593040 - AluJb SINE Alu -6 306 1 2996 162 30 87 chr11 8190513 8190791 -142592762 - L1MB5 LINE L1 -41 6133 5841 2336 109 3 0 chr11 8190791 8191095 -142592458 - AluSx SINE Alu -7 305 1 2996 162 30 87 chr11 8191095 8191455 -142592098 - L1MB5 LINE L1 -333 5841 5534 3503 125 2 4 chr11 8191455 8191967 -142591586 - MER9 LTR ERVK 0 511 1 2996 162 30 87 chr11 8191967 8192017 -142591536 - L1MB5 LINE L1 -640 5534 5483 2393 84 0 3 chr11 8192278 8192576 -142590977 - AluSx SINE Alu -15 297 1 1398 234 77 36 chr11 8192576 8193020 -142590533 - MLT1C LTR MaLR 0 467 6 2383 99 0 0 chr11 8193050 8193353 -142590200 - AluSg SINE Alu -7 303 1 2631 230 61 20 chr11 8193391 8194375 -142589178 - L1ME3A LINE L1 -161 6009 4983 2463 74 3 0 chr11 8194739 8195038 -142588515 - AluSp SINE Alu -13 300 1 403 245 0 110 chr11 8195349 8195463 -142588090 - MIR SINE MIR -6 256 162 1621 171 40 3 chr11 8195463 8195761 -142587792 - AluJb SINE Alu -3 309 1 403 245 0 110 chr11 8195761 8195801 -142587752 - MIR SINE MIR -100 162 119 2171 127 97 76 chr11 8195834 8195934 -142587619 - MER39 LTR ERV1 -1 706 610 1782 169 19 7 chr11 8195934 8196241 -142587312 + AluJo SINE Alu 1 311 -1 2171 127 97 76 chr11 8196241 8196263 -142587290 - MER39 LTR ERV1 -97 610 590 2529 58 6 16 chr11 8196263 8196576 -142586977 + AluY SINE Alu 1 310 -1 2171 127 97 76 chr11 8196576 8196978 -142586575 - MER39 LTR ERV1 -117 590 170 180 0 0 0 chr11 8197080 8197100 -142586453 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1253 103 0 29 chr11 8197179 8197354 -142586199 + AluSx SINE Alu 1 170 -142 2331 105 0 13 chr11 8197381 8197696 -142585857 - AluSx SINE Alu -1 311 1 966 182 0 16 chr11 8197732 8197919 -142585634 - AluJb SINE Alu -2 310 127 2181 116 0 3 chr11 8197941 8198235 -142585318 - AluSx SINE Alu -19 293 1 2266 102 3 0 chr11 8198267 8198579 -142584974 - AluSp SINE Alu 0 313 1 2375 199 59 109 chr11 8199131 8199805 -142583748 - HAL1 LINE L1 -634 1873 1167 2191 103 3 0 chr11 8199805 8200120 -142583433 - AluSq SINE Alu 0 316 1 1490 153 111 0 chr11 8200127 8200389 -142583164 - AluJb SINE Alu -21 291 1 2375 199 59 109 chr11 8200389 8200564 -142582989 - HAL1 LINE L1 -1346 1161 1063 1708 138 40 20 chr11 8200564 8200862 -142582691 - AluJo SINE Alu -8 304 1 2375 199 59 109 chr11 8200862 8200939 -142582614 - HAL1 LINE L1 -1444 1063 984 1732 187 76 22 chr11 8201071 8201308 -142582245 - L1MB8 LINE L1 0 6178 5955 180 0 0 0 chr11 8201308 8201328 -142582225 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 2127 98 3 7 chr11 8201328 8201613 -142581940 - AluSq SINE Alu -29 284 1 1732 187 76 22 chr11 8201613 8201781 -142581772 - L1MB8 LINE L1 -222 5956 5750 1167 174 11 114 chr11 8201799 8202080 -142581473 - AluJo SINE Alu -19 293 42 524 196 116 0 chr11 8202098 8202210 -142581343 - FLAM_C SINE Alu -8 125 1 511 254 103 46 chr11 8202213 8202532 -142581021 - HAL1 LINE L1 -2137 370 2 421 317 18 18 chr11 8202576 8202740 -142580813 - MIR3 SINE MIR -9 199 36 2222 103 7 10 chr11 8202995 8203296 -142580257 + AluSx SINE Alu 1 300 -12 2122 128 0 10 chr11 8203822 8204126 -142579427 + AluSx SINE Alu 6 306 -6 1993 148 3 0 chr11 8205013 8205318 -142578235 - AluSx SINE Alu -6 306 1 1575 180 27 38 chr11 8205417 8205557 -142577996 - L1MD1 LINE L1 0 6242 6102 1469 163 17 21 chr11 8205557 8205845 -142577708 + AluSq SINE Alu 16 302 -11 1575 180 27 38 chr11 8205845 8206077 -142577476 - L1MD1 LINE L1 -140 6102 5874 1261 201 74 72 chr11 8206083 8206586 -142576967 - L1MDa LINE L1 -4561 1519 1016 811 171 0 29 chr11 8206604 8206744 -142576809 - AluJo SINE Alu -176 136 1 257 250 37 9 chr11 8206745 8206882 -142576671 - L1MDa LINE L1 -5064 1019 879 2199 101 13 7 chr11 8206897 8207195 -142576358 - AluSg SINE Alu -10 300 1 1517 238 146 33 chr11 8207204 8207403 -142576150 - L1MDa LINE L1 -5292 778 603 194 62 31 0 chr11 8207403 8207435 -142576118 + (TTA)n Simple_repeat Simple_repeat 1 33 0 1517 238 146 33 chr11 8207435 8207836 -142575717 - L1MDa LINE L1 -5467 603 110 1400 177 90 7 chr11 8208028 8208305 -142575248 + AluJo SINE Alu 3 302 -10 2195 129 0 3 chr11 8208721 8209023 -142574530 - AluSx SINE Alu -11 301 1 276 139 0 23 chr11 8209572 8209615 -142573938 - 5S rRNA rRNA -79 42 1 573 204 38 81 chr11 8210965 8211176 -142572377 - MER112 DNA MER1_type -58 202 1 754 262 16 60 chr11 8212661 8212913 -142570640 - MIR SINE MIR -6 256 16 1650 178 0 24 chr11 8212943 8213236 -142570317 - AluJo SINE Alu -26 286 1 231 173 53 93 chr11 8213281 8213356 -142570197 - MIR SINE MIR -70 192 121 1918 140 14 0 chr11 8213980 8214266 -142569287 - AluSx SINE Alu -22 290 1 1091 263 94 4 chr11 8215742 8216231 -142567322 - L2 LINE L2 0 3313 2766 2430 179 137 62 chr11 8216275 8217035 -142566518 - L1MC4 LINE L1 0 8042 7226 276 225 14 0 chr11 8217079 8217150 -142566403 - L1MC4 LINE L1 -805 7237 7166 1796 151 37 0 chr11 8217150 8217448 -142566105 - AluJo SINE Alu -3 309 1 1153 178 0 53 chr11 8217454 8217679 -142565874 - AluJo SINE Alu -15 297 85 692 140 156 1 chr11 8217682 8217858 -142565695 - L1MC4 LINE L1 -715 7143 6882 406 228 53 0 chr11 8217863 8217977 -142565576 + L2 LINE L2 3194 3313 0 * 665 273 5 20 chr11 8217976 8218174 -142565379 - L2 LINE L2 -600 2714 2520 923 265 79 0 chr11 8218177 8218430 -142565123 - Charlie8 DNA MER1_type -2143 274 2 1885 170 3 3 chr11 8219342 8219631 -142563922 - AluJb SINE Alu -23 289 1 2129 103 52 0 chr11 8219768 8220058 -142563495 - AluSq SINE Alu -8 305 1 2320 97 7 0 chr11 8220214 8220514 -142563039 - AluSc SINE Alu -7 302 1 1944 156 3 0 chr11 8221144 8221433 -142562120 - AluSx SINE Alu -22 290 1 2305 80 3 0 chr11 8221534 8221820 -142561733 - AluSg SINE Alu -22 288 2 246 245 0 0 chr11 8222035 8222084 -142561469 - MIR SINE MIR -70 138 90 2338 92 3 7 chr11 8222186 8222490 -142561063 - AluSx SINE Alu -9 303 1 1432 152 32 95 chr11 8222676 8222853 -142560700 - AluJo SINE Alu -16 296 146 2006 116 0 40 chr11 8222853 8223154 -142560399 - AluSx SINE Alu -23 289 1 1432 152 32 95 chr11 8223154 8223292 -142560261 - AluJo SINE Alu -166 146 1 950 182 82 29 chr11 8223981 8224261 -142559292 + L1MC5 LINE L1 7589 7883 -78 2232 116 0 0 chr11 8224344 8224637 -142558916 + AluY SINE Alu 2 294 -17 1341 73 11 28 chr11 8224745 8224924 -142558629 - AluSx SINE Alu -136 176 1 1884 153 3 16 chr11 8225955 8226263 -142557290 - AluJo SINE Alu -8 304 1 23 0 0 0 chr11 8226338 8226361 -142557192 + AT_rich Low_complexity Low_complexity 1 23 0 2463 84 0 3 chr11 8226548 8226859 -142556694 - AluSg SINE Alu 0 310 1 2074 87 3 93 chr11 8227666 8227999 -142555554 + AluSx SINE Alu 1 303 -9 267 241 0 0 chr11 8228540 8228594 -142554959 - L1ME4a LINE L1 -95 6026 5973 2493 110 48 20 chr11 8228640 8228994 -142554559 - THE1B LTR MaLR 0 364 1 11706 88 8 27 chr11 8228999 8229370 -142554183 - THE1B-int LTR MaLR -6 1574 1197 2057 125 3 28 chr11 8229370 8229691 -142553862 + AluSp SINE Alu 1 313 0 11706 88 8 27 chr11 8229691 8230925 -142552628 - THE1B-int LTR MaLR -383 1197 1 2324 104 75 23 chr11 8230925 8231270 -142552283 - THE1B LTR MaLR 0 364 2 2217 114 3 10 chr11 8232206 8232514 -142551039 - AluSx SINE Alu -6 306 1 188 115 0 0 chr11 8233208 8233234 -142550319 + L2 LINE L2 3241 3266 -6 268 228 28 4 chr11 8233349 8233612 -142549941 + (CA)n Simple_repeat Simple_repeat 1 269 0 1176 64 0 7 chr11 8233638 8233779 -142549774 - L1PA7 LINE L1 -15 6139 6000 739 299 104 31 chr11 8233939 8234110 -142549443 + L1ME3A LINE L1 4981 5138 -1024 2138 106 3 7 chr11 8234110 8234403 -142549150 - AluSx SINE Alu -20 292 1 739 299 104 31 chr11 8234403 8234943 -142548610 + L1ME3A LINE L1 5138 5652 -510 2429 70 0 3 chr11 8234943 8235242 -142548311 - AluY SINE Alu -13 298 1 1144 114 0 0 chr11 8235250 8235408 -142548145 - AluSp SINE Alu -19 294 137 626 232 52 21 chr11 8235408 8235602 -142547951 + L1ME3A LINE L1 5740 5939 -231 1508 152 119 15 chr11 8235604 8235873 -142547680 + AluJo SINE Alu 1 297 -15 466 230 72 7 chr11 8235939 8236078 -142547475 - MIR SINE MIR 0 262 115 2918 146 30 32 chr11 8236249 8236756 -142546797 - L1MA5 LINE L1 -4 6296 5791 605 193 30 37 chr11 8236813 8236948 -142546605 + MIR SINE MIR 15 148 -114 2080 130 13 0 chr11 8236976 8237275 -142546278 - AluSx SINE Alu -9 303 1 320 410 17 11 chr11 8237353 8237531 -142546022 - MIR3 SINE MIR -17 191 13 1824 158 0 16 chr11 8237557 8237861 -142545692 - AluJb SINE Alu -13 299 1 583 278 40 35 chr11 8237864 8238091 -142545462 - MIR SINE MIR -7 255 28 1754 164 10 7 chr11 8238849 8239141 -142544412 - AluJo SINE Alu -19 293 1 406 326 21 7 chr11 8239166 8239312 -142544241 - MIR SINE MIR -67 141 34 2424 70 3 0 chr11 8239514 8239812 -142543741 + AluSp SINE Alu 1 299 -14 226 308 26 26 chr11 8241239 8241356 -142542197 + L2 LINE L2 2894 3010 -262 375 298 69 23 chr11 8241360 8241578 -142541975 - MLT1L LTR MaLR -2 613 386 1519 200 10 23 chr11 8241643 8241943 -142541610 - AluJo SINE Alu -16 296 1 1801 181 13 3 chr11 8242029 8242338 -142541215 - AluJo SINE Alu 0 312 1 281 287 69 18 chr11 8242350 8242565 -142540988 - MLT1L LTR MaLR -310 201 1 191 398 65 30 chr11 8242585 8242786 -142540767 + L2 LINE L2 3030 3237 -35 229 303 10 71 chr11 8242939 8243038 -142540515 + L2 LINE L2 3221 3313 0 202 289 23 78 chr11 8243009 8243137 -142540416 - L2 LINE L2 -9 3304 3184 * 4015 180 127 77 chr11 8243316 8244587 -142538966 - L1M4 LINE L1 -964 5182 3849 810 249 5 22 chr11 8244588 8244773 -142538780 - AluJo SINE Alu -11 301 120 3787 197 52 49 chr11 8244795 8245182 -142538371 - L1MEc LINE L1 -3887 2509 2125 2381 62 13 10 chr11 8245182 8245488 -142538065 - AluY SINE Alu -4 307 1 3787 197 52 49 chr11 8245488 8245657 -142537896 - L1MEc LINE L1 -4271 2125 1958 613 269 8 0 chr11 8245657 8245787 -142537766 + FLAM_A SINE Alu 1 131 -2 3787 197 52 49 chr11 8245787 8246184 -142537369 - L1MEc LINE L1 -4438 1958 1552 1031 98 0 0 chr11 8246184 8246317 -142537236 + AluSq/x SINE Alu 1 133 -180 2347 116 8 25 chr11 8246419 8246772 -142536781 - THE1B LTR MaLR -17 347 1 1532 158 32 80 chr11 8247093 8247404 -142536149 - AluJb SINE Alu -16 296 1 219 69 0 0 chr11 8247405 8247434 -142536119 + (T)n Simple_repeat Simple_repeat 1 29 0 899 232 5 16 chr11 8248007 8248197 -142535356 + AluSc SINE Alu 114 301 -8 2057 133 76 25 chr11 8248227 8248581 -142534972 - THE1C LTR MaLR -3 372 1 1031 281 35 31 chr11 8248583 8249095 -142534458 - L1MEc LINE L1 -4856 1540 1027 2746 231 103 15 chr11 8249103 8249132 -142534421 - L1MEc LINE L1 -5553 843 818 1406 228 10 7 chr11 8249132 8249426 -142534127 - AluJo SINE Alu -13 299 5 2746 231 103 15 chr11 8249426 8250137 -142533416 - L1MEc LINE L1 -5578 818 38 312 70 0 0 chr11 8250176 8250219 -142533334 + (TG)n Simple_repeat Simple_repeat 2 44 0 348 24 0 0 chr11 8251479 8251520 -142532033 + (TG)n Simple_repeat Simple_repeat 2 42 0 2107 128 3 7 chr11 8251538 8251844 -142531709 - AluSq SINE Alu -8 305 1 2024 113 7 3 chr11 8252400 8252683 -142530870 + AluSc SINE Alu 26 309 0 1821 168 21 0 chr11 8253018 8253304 -142530249 + AluJo SINE Alu 1 292 -20 2405 74 0 7 chr11 8253452 8253750 -142529803 + AluSg SINE Alu 1 296 -14 710 175 0 0 chr11 8253786 8253889 -142529664 - FLAM_A SINE Alu -20 122 20 236 167 0 0 chr11 8254033 8254069 -142529484 - L2 LINE L2 -12 3260 3225 1278 140 154 89 chr11 8254399 8254692 -142528861 + AluJb SINE Alu 1 312 0 21 36 0 0 chr11 8254953 8254981 -142528572 + GC_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr11 8255397 8255421 -142528132 + GC_rich Low_complexity Low_complexity 1 24 0 333 0 0 0 chr11 8255867 8255904 -142527649 + (A)n Simple_repeat Simple_repeat 1 37 0 279 0 0 0 chr11 8256009 8256040 -142527513 + (A)n Simple_repeat Simple_repeat 1 31 0 289 178 47 122 chr11 8256135 8256242 -142527311 - HsTC2 DNA Tc2 -275 1623 1525 2190 122 3 7 chr11 8256274 8256577 -142526976 - AluSx SINE Alu -10 302 1 305 243 14 0 chr11 8256649 8256723 -142526830 - HsTC2 DNA Tc2 -1823 75 1 1021 256 128 45 chr11 8256742 8257095 -142526458 + L1ME3A LINE L1 5494 5901 -269 1300 216 21 31 chr11 8257095 8257382 -142526171 + AluJb SINE Alu 2 285 -17 1021 256 128 45 chr11 8257382 8257521 -142526032 + L1ME3A LINE L1 5901 6027 -143 2537 68 3 3 chr11 8257559 8257867 -142525686 + AluSp SINE Alu 1 308 -5 309 211 53 72 chr11 8257898 8258050 -142525503 + L1ME4a LINE L1 5932 6080 -41 225 320 0 26 chr11 8258074 8258152 -142525401 + MIR SINE MIR 24 99 -109 24 0 0 0 chr11 8258152 8258176 -142525377 + AT_rich Low_complexity Low_complexity 1 24 0 460 209 115 22 chr11 8258290 8258429 -142525124 + MIR SINE MIR 111 262 0 2331 85 0 3 chr11 8258737 8259032 -142524521 - AluY SINE Alu -17 294 1 453 192 58 19 chr11 8260025 8260129 -142523424 - L2 LINE L2 -18 3295 3188 4142 136 47 44 chr11 8260222 8260480 -142523073 + L1MB7 LINE L1 5430 5686 -498 2351 102 10 0 chr11 8260480 8260785 -142522768 + AluSq SINE Alu 1 308 -5 4142 136 47 44 chr11 8260785 8261279 -142522274 + L1MB7 LINE L1 5686 6184 0 622 247 54 40 chr11 8261440 8261577 -142521976 + MIR SINE MIR 1 135 -127 221 73 0 24 chr11 8261577 8261618 -142521935 + (TTTAA)n Simple_repeat Simple_repeat 3 42 0 1482 185 11 21 chr11 8261618 8261905 -142521648 - AluJb SINE Alu -28 284 1 622 247 54 40 chr11 8261905 8261989 -142521564 + MIR SINE MIR 134 226 -36 467 235 87 0 chr11 8262021 8262136 -142521417 - L1ME4a LINE L1 -293 5828 5704 260 317 119 20 chr11 8262188 8262289 -142521264 + MIR3 SINE MIR 6 116 -92 3615 126 4 0 chr11 8262337 8262839 -142520714 + L1PA15 LINE L1 5656 6159 -6 545 158 18 0 chr11 8263256 8263370 -142520183 + CT-rich Low_complexity Low_complexity 2 117 0 910 154 0 7 chr11 8263372 8263515 -142520038 - AluSc SINE Alu -36 273 132 1682 93 0 9 chr11 8263515 8263741 -142519812 - AluSg/x SINE Alu -4 308 85 264 241 35 0 chr11 8264919 8264977 -142518576 - L1ME4a LINE L1 -470 5651 5592 2058 133 3 0 chr11 8265006 8265299 -142518254 - AluSx SINE Alu -18 294 1 31 26 0 0 chr11 8265306 8265344 -142518209 + AT_rich Low_complexity Low_complexity 1 38 0 23 33 0 0 chr11 8265478 8265508 -142518045 + AT_rich Low_complexity Low_complexity 1 30 0 736 302 21 25 chr11 8265797 8266039 -142517514 + MIR SINE MIR 4 244 -18 259 243 89 66 chr11 8266514 8266648 -142516905 - MIR SINE MIR -61 147 52 1829 121 15 95 chr11 8266793 8267131 -142516422 - AluSx SINE Alu -1 311 1 2225 109 20 0 chr11 8267141 8267445 -142516108 - AluSx SINE Alu -2 310 1 513 290 37 19 chr11 8268275 8268437 -142515116 - MIR3 SINE MIR -15 193 29 485 302 81 51 chr11 8269031 8269266 -142514287 + MIR SINE MIR 11 252 -10 300 349 118 25 chr11 8270345 8270855 -142512698 + L2 LINE L2 1941 2497 -817 232 297 115 24 chr11 8272092 8272257 -142511296 - L3b LINE CR1 -232 1351 1172 316 308 81 38 chr11 8272837 8273022 -142510531 + MIR3 SINE MIR 16 208 0 2101 117 7 0 chr11 8274617 8274925 -142508628 - AluSx SINE Alu -2 310 1 335 236 14 0 chr11 8276394 8276466 -142507087 - L2 LINE L2 0 3272 3200 183 250 143 0 chr11 8277490 8277546 -142506007 + L3 LINE CR1 113 176 -1401 966 148 17 165 chr11 8277827 8278226 -142505327 + Tigger3(Golem) DNA MER2_type 6 3028 -1 2173 85 3 0 chr11 8278429 8278740 -142504813 - AluSp SINE Alu 0 312 1 923 240 91 33 chr11 8279170 8279412 -142504141 + MIR SINE MIR 7 262 0 193 307 23 11 chr11 8280995 8281083 -142502470 - MIR SINE MIR -116 146 58 385 304 86 58 chr11 8281279 8281592 -142501961 + L2 LINE L2 2899 3220 -52 3192 197 50 53 chr11 8282436 8283420 -142500133 - L1MC5 LINE L1 -430 7531 6633 1209 162 60 0 chr11 8283560 8283776 -142499777 - MSTB1 LTR MaLR 0 432 204 698 159 0 0 chr11 8283776 8283883 -142499670 + AluSq/x SINE Alu 2 108 -204 531 296 11 49 chr11 8284053 8284320 -142499233 - L1MEd LINE L1 -4862 1257 1001 345 338 88 44 chr11 8284403 8284699 -142498854 - MLT1K LTR MaLR -158 430 122 265 345 58 0 chr11 8284977 8285064 -142498489 + LTR67 LTR ERVL 99 190 -367 237 299 104 0 chr11 8285214 8285281 -142498272 - MIR SINE MIR -149 113 40 665 278 45 31 chr11 8285763 8285986 -142497567 - MIR SINE MIR -14 248 23 1358 156 28 86 chr11 8286006 8286332 -142497221 - AluJo SINE Alu -5 307 1 271 146 0 0 chr11 8286332 8286380 -142497173 - L1ME4a LINE L1 -1 6120 6073 2193 109 64 19 chr11 8286510 8286869 -142496684 - THE1C LTR MaLR 0 375 1 203 122 0 49 chr11 8286876 8286917 -142496636 + (TTTTC)n Simple_repeat Simple_repeat 2 40 0 2140 100 0 0 chr11 8287128 8287419 -142496134 - AluSg SINE Alu -19 291 1 369 0 0 0 chr11 8287475 8287516 -142496037 + (TG)n Simple_repeat Simple_repeat 1 41 0 189 0 0 0 chr11 8287838 8287859 -142495694 + (TCC)n Simple_repeat Simple_repeat 2 22 0 2080 286 90 38 chr11 8287891 8288366 -142495187 - L1MC4a LINE L1 -743 5403 4954 2265 88 3 0 chr11 8288366 8288661 -142494892 - AluSx SINE Alu -16 296 1 2080 286 90 38 chr11 8288661 8290673 -142492880 - L1MC4a LINE L1 -1192 4954 3502 2282 89 0 13 chr11 8290850 8291163 -142492390 - AluSc SINE Alu 0 309 1 463 286 100 92 chr11 8291257 8291617 -142491936 - L2 LINE L2 0 3272 2910 2070 98 39 0 chr11 8291707 8291992 -142491561 + AluSq SINE Alu 1 296 -17 6107 193 81 54 chr11 8292031 8292632 -142490921 + MER45R DNA AcHobo 4 587 -994 1406 179 144 4 chr11 8292632 8292895 -142490658 - AluJo SINE Alu -2 300 1 6107 193 81 54 chr11 8292895 8293591 -142489962 + MER45R DNA AcHobo 587 1352 -229 1796 154 3 0 chr11 8293591 8293883 -142489670 - AluJo SINE Alu -19 293 1 6107 193 81 54 chr11 8293883 8294120 -142489433 + MER45R DNA AcHobo 1352 1581 0 396 265 66 73 chr11 8294233 8294339 -142489214 + L2 LINE L2 3134 3240 -32 578 300 107 0 chr11 8294339 8294572 -142488981 + MIR SINE MIR 4 261 -1 396 265 66 73 chr11 8294572 8294601 -142488952 + L2 LINE L2 3240 3268 -4 21 0 0 0 chr11 8294705 8294726 -142488827 + AT_rich Low_complexity Low_complexity 1 21 0 3828 160 47 27 chr11 8294842 8295469 -142488084 + L1MB3 LINE L1 5415 6061 -122 1913 95 29 49 chr11 8295469 8295775 -142487778 + AluSx SINE Alu 1 300 -12 3828 160 47 27 chr11 8295775 8295899 -142487654 + L1MB3 LINE L1 6061 6181 -2 235 232 14 14 chr11 8295920 8295989 -142487564 - MLT1L LTR MaLR -58 557 489 298 277 122 27 chr11 8296034 8296182 -142487371 - MLT1K LTR MaLR -230 358 197 251 242 148 66 chr11 8296151 8296333 -142487220 - MLT1L LTR MaLR -403 212 16 * 1801 103 3 80 chr11 8296488 8296826 -142486727 - AluSg SINE Alu 0 315 1 250 300 34 45 chr11 8296975 8297149 -142486404 - L2 LINE L2 -309 2963 2793 1876 234 44 67 chr11 8297166 8297415 -142486138 - L1ME3 LINE L1 -7 6155 5902 1678 167 0 42 chr11 8297415 8297581 -142485972 - AluJo SINE Alu -13 299 150 1816 154 0 10 chr11 8297581 8297886 -142485667 - AluSx SINE Alu -10 302 1 1678 167 0 42 chr11 8297886 8298030 -142485523 - AluJo SINE Alu -162 150 2 1876 234 44 67 chr11 8298030 8298055 -142485498 - L1ME3 LINE L1 -260 5902 5878 5364 96 31 8 chr11 8298055 8298817 -142484736 - LTR17 LTR ERV1 0 780 1 1876 234 44 67 chr11 8298817 8299156 -142484397 - L1ME3 LINE L1 -284 5878 5555 241 245 147 29 chr11 8299188 8299290 -142484263 - L2 LINE L2 -586 2728 2615 432 238 99 61 chr11 8299368 8299657 -142483896 - MLT1K LTR MaLR -230 358 41 301 325 107 19 chr11 8299709 8299915 -142483638 - L2 LINE L2 -741 2573 2350 180 0 0 0 chr11 8299963 8299983 -142483570 + (A)n Simple_repeat Simple_repeat 1 20 0 205 290 104 67 chr11 8301766 8302094 -142481459 - L2 LINE L2 -1040 2274 1935 259 293 0 0 chr11 8303399 8303457 -142480096 + (TG)n Simple_repeat Simple_repeat 2 59 0 31 26 0 0 chr11 8304464 8304502 -142479051 + GC_rich Low_complexity Low_complexity 1 38 0 24 63 0 16 chr11 8304625 8304644 -142478909 + GC_rich Low_complexity Low_complexity 1 19 -43 306 73 0 0 chr11 8304644 8304685 -142478868 + (CTG)n Simple_repeat Simple_repeat 1 41 0 24 63 0 16 chr11 8304685 8304728 -142478825 + GC_rich Low_complexity Low_complexity 19 62 0 1430 102 40 31 chr11 8305535 8305761 -142477792 + MER30 DNA MER1_type 3 230 0 414 298 131 27 chr11 8305852 8306267 -142477286 - L2 LINE L2 -22 3250 2795 328 267 106 37 chr11 8307114 8307275 -142476278 - MIR3 SINE MIR -9 199 28 1967 101 0 44 chr11 8307622 8307920 -142475633 - AluSq SINE Alu -24 289 5 244 219 31 78 chr11 8308061 8308125 -142475428 + L2 LINE L2 3251 3311 -2 195 42 0 0 chr11 8308580 8308604 -142474949 + (TC)n Simple_repeat Simple_repeat 2 25 0 243 286 67 0 chr11 8309039 8309158 -142474395 - HAL1b LINE L1 0 1348 1222 2409 83 0 0 chr11 8309256 8309558 -142473995 - AluSx SINE Alu -10 302 1 1807 138 3 14 chr11 8310007 8310298 -142473255 + AluJo SINE Alu 13 300 -12 2208 99 0 6 chr11 8310369 8310681 -142472872 - AluY SINE Alu -1 310 1 5684 191 87 69 chr11 8310703 8311079 -142472474 - L1MC4a LINE L1 0 7808 7440 1464 151 78 4 chr11 8311079 8311197 -142472356 + AluJo SINE Alu 1 109 -203 216 0 0 0 chr11 8311197 8311221 -142472332 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1464 151 78 4 chr11 8311221 8311373 -142472180 + AluJo SINE Alu 109 291 -21 5684 191 87 69 chr11 8311373 8312286 -142471267 - L1MC4a LINE L1 -368 7440 6475 2166 70 46 0 chr11 8312286 8312570 -142470983 + AluSg SINE Alu 1 297 -13 5684 191 87 69 chr11 8312570 8313118 -142470435 - L1MC4a LINE L1 -1333 6475 5938 2754 192 33 3 chr11 8313137 8313716 -142469837 - L1MB7 LINE L1 -9 6175 5580 2726 171 14 41 chr11 8313720 8314433 -142469120 + L1MA7 LINE L1 5084 5776 -407 658 154 0 19 chr11 8314433 8314564 -142468989 - FLAM_A SINE Alu 0 142 20 2726 171 14 41 chr11 8314564 8314907 -142468646 + L1MA7 LINE L1 5776 6127 -56 3074 185 35 47 chr11 8314926 8315443 -142468110 - L1MB7 LINE L1 -597 5587 5090 1557 153 22 7 chr11 8315443 8315718 -142467835 - AluJo SINE Alu 0 312 34 3074 185 35 47 chr11 8315718 8316188 -142467365 - L1MB7 LINE L1 -1094 5090 4616 1433 222 28 25 chr11 8316203 8316559 -142466994 - L1MC4a LINE L1 -1854 5954 5598 525 258 155 7 chr11 8318798 8318953 -142464600 + MER5B DNA MER1_type 1 178 0 351 217 217 17 chr11 8319596 8319711 -142463842 - L2 LINE L2 -1 3312 3175 229 345 19 49 chr11 8319828 8320095 -142463458 + L2 LINE L2 2045 2303 -1011 268 340 125 71 chr11 8320587 8320894 -142462659 + L2 LINE L2 2840 3176 -96 2048 112 31 0 chr11 8320894 8321188 -142462365 - AluSx SINE Alu -9 303 1 268 340 125 71 chr11 8321188 8321289 -142462264 + L2 LINE L2 3176 3270 -2 548 275 99 23 chr11 8321723 8321894 -142461659 + MIR3 SINE MIR 19 202 -6 337 269 92 8 chr11 8322232 8322362 -142461191 - HAL1 LINE L1 -2366 141 1 2254 68 0 0 chr11 8323615 8323937 -142459616 + AluY SINE Alu 2 323 0 24 0 0 0 chr11 8324085 8324109 -142459444 + AT_rich Low_complexity Low_complexity 1 24 0 181 302 19 19 chr11 8324139 8324192 -142459361 + L2 LINE L2 1145 1197 -2117 304 103 35 0 chr11 8325935 8325993 -142457560 + CT-rich Low_complexity Low_complexity 2 61 0 563 274 101 25 chr11 8327258 8327495 -142456058 - MIR SINE MIR -1 261 7 201 308 133 7 chr11 8327586 8327729 -142455824 + L2 LINE L2 3109 3269 -3 25 105 0 0 chr11 8328335 8328430 -142455123 + AT_rich Low_complexity Low_complexity 1 95 0 212 234 64 0 chr11 8329179 8329226 -142454327 + L2 LINE L2 3259 3308 -5 383 298 62 58 chr11 8330438 8330566 -142452987 + MIR SINE MIR 40 171 -91 1900 127 57 46 chr11 8330566 8330936 -142452617 - THE1C LTR MaLR -1 374 1 383 298 62 58 chr11 8330936 8331015 -142452538 + MIR SINE MIR 171 248 -14 4437 230 112 104 chr11 8331457 8331625 -142451928 - HAL1 LINE L1 -50 2457 2292 1795 164 3 6 chr11 8331625 8331937 -142451616 - AluJb SINE Alu -1 311 1 4437 230 112 104 chr11 8331937 8332854 -142450699 - HAL1 LINE L1 -215 2292 1384 1904 141 3 20 chr11 8332854 8333160 -142450393 - AluSx SINE Alu -8 304 4 4437 230 112 104 chr11 8333160 8334501 -142449052 - HAL1 LINE L1 -1123 1384 10 1932 139 0 7 chr11 8334535 8334844 -142448709 - AluJb SINE Alu -2 310 4 1909 115 0 57 chr11 8337301 8337496 -142446057 - AluSx SINE Alu 0 312 142 2393 84 0 0 chr11 8337496 8337806 -142445747 - AluSg SINE Alu 0 310 1 1909 115 0 57 chr11 8337806 8337941 -142445612 - AluSx SINE Alu -170 142 1 1881 127 3 45 chr11 8338290 8338604 -142444949 + AluSx SINE Alu 1 301 -11 2352 78 7 0 chr11 8341089 8341398 -142442155 + AluSp SINE Alu 2 312 -1 207 0 0 0 chr11 8341398 8341421 -142442132 + (TA)n Simple_repeat Simple_repeat 1 23 0 2236 106 0 0 chr11 8341826 8342129 -142441424 + AluSq SINE Alu 3 305 -8 180 305 0 17 chr11 8343549 8343608 -142439945 - L2 LINE L2 -7 3265 3208 897 252 74 0 chr11 8343959 8344189 -142439364 - MIR SINE MIR -14 248 2 744 236 13 41 chr11 8344301 8344525 -142439028 - MIR SINE MIR -3 259 46 726 44 0 0 chr11 8344843 8344933 -142438620 + (TAGA)n Simple_repeat Simple_repeat 1 90 0 1615 91 0 18 chr11 8344934 8345155 -142438398 - AluSg/x SINE Alu -15 295 79 671 229 120 26 chr11 8346226 8346492 -142437061 + L1ME4a LINE L1 5767 6057 -64 1801 154 0 7 chr11 8346578 8346870 -142436683 + AluJb SINE Alu 9 298 -14 856 133 108 0 chr11 8346892 8347050 -142436503 + L1MD3 LINE L1 7811 7985 -10 334 325 79 0 chr11 8348915 8349041 -142434512 + L2 LINE L2 3136 3271 -1 2277 83 0 10 chr11 8349808 8350121 -142433432 + AluSg SINE Alu 1 310 0 363 73 0 0 chr11 8350459 8350514 -142433039 + (TG)n Simple_repeat Simple_repeat 2 56 0 21 0 0 0 chr11 8350724 8350745 -142432808 + AT_rich Low_complexity Low_complexity 1 21 0 991 255 140 46 chr11 8350922 8351545 -142432008 - L2 LINE L2 -6 3307 2660 1504 161 79 4 chr11 8351581 8351860 -142431693 + AluJo SINE Alu 1 300 -12 686 287 99 28 chr11 8351944 8352441 -142431112 - L1MC4a LINE L1 -327 5794 5297 304 127 48 0 chr11 8352805 8352868 -142430685 + (TATG)n Simple_repeat Simple_repeat 2 67 0 336 339 120 16 chr11 8353037 8353353 -142430200 - L2 LINE L2 -527 2787 2439 1577 273 102 30 chr11 8354062 8354805 -142428748 + L2 LINE L2 1458 2254 -1060 598 280 5 16 chr11 8354979 8355167 -142428386 - Charlie7 DNA MER1_type -1927 685 500 1375 188 4 0 chr11 8355167 8355396 -142428157 + Tigger7 DNA MER2_type 1 230 -2257 301 226 0 5 chr11 8355431 8355516 -142428037 + Tigger7 DNA MER2_type 148 230 -321 278 233 0 0 chr11 8355504 8355564 -142427989 + Tigger7 DNA MER2_type 159 218 -2269 * 298 222 0 0 chr11 8355564 8355636 -142427917 + Tigger7 DNA MER2_type 159 230 -503 * 1512 153 45 9 chr11 8355611 8355971 -142427582 + Tigger7 DNA MER2_type 148 2555 -32 482 303 73 33 chr11 8356072 8356551 -142427002 - Charlie7 DNA MER1_type -2110 502 5 1168 290 51 17 chr11 8356565 8356975 -142426578 + L2 LINE L2 2292 2715 -599 1042 154 192 0 chr11 8356991 8357199 -142426354 + AluJb SINE Alu 35 282 -30 306 0 0 0 chr11 8357208 8357242 -142426311 + (GAAAA)n Simple_repeat Simple_repeat 2 35 0 439 333 77 6 chr11 8357242 8357425 -142426128 + L2 LINE L2 2705 2900 -414 1268 171 103 21 chr11 8357454 8357755 -142425798 - AluJo SINE Alu 0 312 1 709 244 83 64 chr11 8357759 8358071 -142425482 + L2 LINE L2 2996 3313 0 26 0 0 0 chr11 8359897 8359923 -142423630 + AT_rich Low_complexity Low_complexity 1 26 0 1936 131 0 7 chr11 8359925 8360216 -142423337 + AluSq SINE Alu 1 289 -24 741 201 81 17 chr11 8360755 8360929 -142422624 + MIR SINE MIR 76 260 -2 1861 115 3 55 chr11 8361104 8361416 -142422137 - AluSx SINE Alu -16 296 1 677 199 22 44 chr11 8361542 8361678 -142421875 - FLAM_A SINE Alu 0 133 1 292 286 41 20 chr11 8361811 8361909 -142421644 + L2 LINE L2 2971 3070 -202 201 272 44 105 chr11 8362070 8362184 -142421369 - L2 LINE L2 -94 3178 3072 286 349 28 9 chr11 8362589 8362698 -142420855 + L2 LINE L2 3202 3312 -1 2073 104 3 0 chr11 8363375 8363663 -142419890 - AluSx SINE Alu -23 289 1 1251 151 67 77 chr11 8363689 8363987 -142419566 + AluJb SINE Alu 1 295 -17 295 249 41 38 chr11 8364019 8364200 -142419353 - MIR SINE MIR -1 261 28 1718 159 21 3 chr11 8364474 8364764 -142418789 - AluJo SINE Alu -17 295 1 182 308 48 39 chr11 8366511 8366615 -142416938 - L2 LINE L2 -10 3262 3158 548 283 105 54 chr11 8367112 8367426 -142416127 - L3 LINE CR1 -37 1540 1211 213 304 0 0 chr11 8367535 8367581 -142415972 + L2 LINE L2 3149 3194 -78 1257 156 93 30 chr11 8367780 8368049 -142415504 + AluJo SINE Alu 1 286 -26 25 51 0 0 chr11 8368049 8368088 -142415465 + AT_rich Low_complexity Low_complexity 1 39 0 814 261 26 34 chr11 8369207 8369392 -142414161 + MIR SINE MIR 31 216 -46 1225 159 121 42 chr11 8369392 8369691 -142413862 + AluJb SINE Alu 1 320 0 814 261 26 34 chr11 8369691 8369738 -142413815 + MIR SINE MIR 216 262 0 482 291 199 0 chr11 8369740 8369946 -142413607 + MIR SINE MIR 12 258 -4 524 276 191 0 chr11 8370629 8370839 -142412714 + MIR SINE MIR 3 252 -10 447 284 47 27 chr11 8370877 8371025 -142412528 + MIR3 SINE MIR 37 187 -21 338 311 22 0 chr11 8371136 8371226 -142412327 - L2 LINE L2 -1 3271 3180 605 280 71 22 chr11 8372245 8372470 -142411083 - MIR SINE MIR -8 254 19 3123 216 54 4 chr11 8373273 8374036 -142409517 - L2 LINE L2 -1115 2199 1399 1397 246 126 28 chr11 8377057 8377897 -142405656 - L2 LINE L2 -16 3297 2373 1430 245 130 25 chr11 8377908 8378396 -142405157 + MLT1G1 LTR MaLR 10 588 -7 540 249 138 44 chr11 8378405 8378630 -142404923 - L2 LINE L2 -941 2373 2128 694 236 79 47 chr11 8379892 8380146 -142403407 - L2 LINE L2 0 3313 3052 2135 112 0 13 chr11 8381361 8381674 -142401879 + AluSx SINE Alu 1 309 -3 1225 207 0 0 chr11 8381883 8382100 -142401453 + MIR SINE MIR 45 261 -1 747 260 25 13 chr11 8382835 8383070 -142400483 + L1MC4 LINE L1 7298 7535 -507 4347 170 35 43 chr11 8383087 8383295 -142400258 + L1MB8 LINE L1 5129 5337 -841 2387 82 0 0 chr11 8383295 8383600 -142399953 + AluY SINE Alu 1 305 -6 4347 170 35 43 chr11 8383600 8384428 -142399125 + L1MB8 LINE L1 5337 6161 -17 1198 228 49 9 chr11 8384527 8384856 -142398697 + L1MC4 LINE L1 7558 7899 -143 246 62 0 0 chr11 8384856 8384888 -142398665 + (TG)n Simple_repeat Simple_repeat 2 33 0 660 138 9 158 chr11 8384906 8385103 -142398450 + L1M4 LINE L1 5153 5260 -886 7095 57 12 0 chr11 8385103 8386715 -142396838 + L1PA7 LINE L1 4530 6153 -1 660 138 9 158 chr11 8386715 8386829 -142396724 + L1M4 LINE L1 5260 5389 -757 345 157 41 99 chr11 8386826 8386947 -142396606 + L1MC4 LINE L1 7928 8041 -1 * 405 227 11 0 chr11 8387512 8387600 -142395953 - MIR SINE MIR -128 134 46 678 283 143 0 chr11 8388272 8388502 -142395051 + MLT1K LTR MaLR 303 565 -23 615 277 51 11 chr11 8388897 8389074 -142394479 - MIR SINE MIR -74 188 5 349 225 0 14 chr11 8389195 8389266 -142394287 - MIR3 SINE MIR -52 156 87 211 289 172 31 chr11 8390299 8390427 -142393126 - L2 LINE L2 -3 3310 3165 451 288 78 38 chr11 8390492 8390889 -142392664 - L2 LINE L2 -193 3079 2624 509 268 24 0 chr11 8390903 8391030 -142392523 + MIR SINE MIR 133 262 0 24 0 0 0 chr11 8392030 8392054 -142391499 + GC_rich Low_complexity Low_complexity 1 24 0 192 77 0 0 chr11 8393494 8393520 -142390033 + (T)n Simple_repeat Simple_repeat 1 26 0 200 226 0 19 chr11 8393653 8393706 -142389847 + T-rich Low_complexity Low_complexity 2 53 0 1684 185 7 0 chr11 8395053 8395345 -142388208 - AluJb SINE Alu -18 294 1 182 309 74 0 chr11 8395893 8395974 -142387579 - L2 LINE L2 -12 3260 3174 1892 253 34 86 chr11 8396020 8397030 -142386523 - L2 LINE L2 -1 3312 2363 2329 63 0 31 chr11 8397030 8397348 -142386205 + AluY SINE Alu 1 308 -3 1892 253 34 86 chr11 8397348 8397420 -142386133 - L2 LINE L2 -950 2363 2289 280 256 26 13 chr11 8397637 8397715 -142385838 - L3 LINE CR1 -11 1566 1488 2034 90 73 0 chr11 8398746 8399034 -142384519 - AluSc SINE Alu 0 309 1 1565 144 16 88 chr11 8399037 8399356 -142384197 - AluJo SINE Alu -16 296 1 2022 145 3 0 chr11 8399548 8399859 -142383694 + AluSx SINE Alu 1 312 0 1114 281 82 36 chr11 8399897 8400694 -142382859 - L2 LINE L2 -46 3267 2443 188 283 50 0 chr11 8400778 8400838 -142382715 - MIR SINE MIR -132 130 68 650 302 152 15 chr11 8401036 8401437 -142382116 - L2 LINE L2 -876 2438 1983 305 244 7 0 chr11 8401441 8401511 -142382042 + L1PA8A LINE L1 5697 5770 -351 558 267 144 65 chr11 8401674 8402112 -142381441 + MLT1L LTR MaLR 3 581 -34 44 35 0 0 chr11 8402142 8402200 -142381353 + AT_rich Low_complexity Low_complexity 1 58 0 532 265 105 52 chr11 8402200 8402297 -142381256 - HAL1 LINE L1 -140 2367 2277 2023 139 0 0 chr11 8402297 8402598 -142380955 - AluJb SINE Alu -11 301 1 532 265 105 52 chr11 8402598 8402824 -142380729 - HAL1 LINE L1 -230 2277 2027 1860 222 122 36 chr11 8402846 8403199 -142380354 - HAL1 LINE L1 -540 1967 1646 2118 88 7 17 chr11 8403199 8403496 -142380057 - AluSg SINE Alu -16 294 1 1860 222 122 36 chr11 8403496 8403751 -142379802 - HAL1 LINE L1 -861 1646 1307 1075 265 48 46 chr11 8403983 8404420 -142379133 - MLT1J1 LTR MaLR -4 442 5 424 261 72 50 chr11 8404453 8404633 -142378920 - HAL1 LINE L1 -2291 216 33 327 272 34 82 chr11 8404744 8404814 -142378739 + L1MC4a LINE L1 5785 5846 -1962 2320 69 0 0 chr11 8404814 8405103 -142378450 - AluY SINE Alu -20 291 3 327 272 34 82 chr11 8405103 8405179 -142378374 + L1MC4a LINE L1 5846 5924 -1884 1965 116 0 20 chr11 8405294 8405621 -142377932 - AluSx SINE Alu 0 321 1 234 321 23 30 chr11 8405703 8405834 -142377719 - L2 LINE L2 -1317 1997 1868 1794 153 7 3 chr11 8409088 8409388 -142374165 - AluJb SINE Alu -11 301 1 2587 43 0 0 chr11 8410659 8410962 -142372591 + AluY SINE Alu 1 303 -8 2314 73 3 0 chr11 8410976 8411277 -142372276 + AluSp SINE Alu 1 302 -11 206 320 13 26 chr11 8411472 8411550 -142372003 + MIR SINE MIR 31 107 -155 2343 90 0 0 chr11 8411564 8411875 -142371678 + AluSq SINE Alu 1 311 -2 279 272 184 8 chr11 8413088 8413213 -142370340 - MIR3 SINE MIR -32 176 30 2598 59 3 0 chr11 8414633 8414938 -142368615 - AluY SINE Alu -5 306 1 318 297 189 0 chr11 8415680 8415828 -142367725 + MIR SINE MIR 68 243 -19 1986 115 32 38 chr11 8415905 8416219 -142367334 + AluJo SINE Alu 1 312 0 182 175 0 25 chr11 8416483 8416523 -142367030 - MIR SINE MIR -137 125 87 390 21 0 0 chr11 8416559 8416606 -142366947 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 6345 76 19 45 chr11 8416606 8417566 -142365987 - SVA Other Other -19 1367 433 1063 90 15 25 chr11 8417580 8417781 -142365772 - SVA Other Other -592 794 596 5819 68 20 65 chr11 8417813 8418717 -142364836 - SVA Other Other -520 866 4 205 283 68 88 chr11 8418928 8419016 -142364537 + L3 LINE CR1 730 818 -759 2359 87 0 0 chr11 8419016 8419304 -142364249 + AluY SINE Alu 1 288 -23 205 283 68 88 chr11 8419304 8419420 -142364133 + L3 LINE CR1 818 930 -647 1616 140 0 4 chr11 8419808 8420043 -142363510 + AluJo SINE Alu 28 261 -51 2170 112 0 0 chr11 8420408 8420693 -142362860 - AluSx SINE Alu -19 293 9 216 154 0 0 chr11 8421454 8421506 -142362047 + (TA)n Simple_repeat Simple_repeat 1 52 0 1993 110 0 28 chr11 8421513 8421795 -142361758 - AluSx SINE Alu -25 287 14 2112 139 0 3 chr11 8422225 8422526 -142361027 + AluSx SINE Alu 1 300 -12 664 221 62 87 chr11 8422544 8422866 -142360687 + HAL1 LINE L1 46 359 -2148 198 103 0 0 chr11 8422896 8422925 -142360628 + (TTCA)n Simple_repeat Simple_repeat 3 31 0 2067 140 3 0 chr11 8423024 8423316 -142360237 - AluJb SINE Alu -19 293 1 2203 260 151 15 chr11 8423372 8424215 -142359338 + L2 LINE L2 355 1311 -2003 722 215 164 7 chr11 8424215 8424488 -142359065 - MER58B DNA MER1_type 0 341 8 394 194 342 0 chr11 8424495 8424650 -142358903 + L2 LINE L2 1304 1511 -1803 399 207 236 0 chr11 8424664 8424804 -142358749 + L2 LINE L2 3141 3313 0 2176 89 62 3 chr11 8424870 8425161 -142358392 - AluSg SINE Alu -2 308 1 477 212 84 96 chr11 8425239 8425489 -142358064 + MER112 DNA MER1_type 8 254 -6 1999 94 67 0 chr11 8425533 8425800 -142357753 - AluSx SINE Alu -17 295 11 549 264 164 9 chr11 8425812 8426032 -142357521 + HAL1 LINE L1 785 1038 -1469 1991 149 88 24 chr11 8426059 8426468 -142357085 + L1MA7 LINE L1 5856 6290 -1 30 27 0 0 chr11 8426470 8426507 -142357046 + AT_rich Low_complexity Low_complexity 1 37 0 293 215 156 15 chr11 8426516 8426651 -142356902 + HAL1 LINE L1 1051 1204 -1303 * 570 252 67 50 chr11 8426642 8426880 -142356673 + HAL1 LINE L1 1823 2064 -443 713 247 100 39 chr11 8426913 8427273 -142356280 + HAL1 LINE L1 2126 2507 0 2313 93 3 10 chr11 8427335 8427647 -142355906 - AluSq SINE Alu -1 312 3 2043 98 0 0 chr11 8427647 8427902 -142355651 - AluSq SINE Alu -58 255 1 229 143 0 89 chr11 8429027 8429083 -142354470 - L2 LINE L2 -78 3235 3185 911 134 139 9 chr11 8429493 8429716 -142353837 - MER33 DNA MER1_type -48 276 25 2012 67 6 103 chr11 8430269 8430599 -142352954 + AluSx SINE Alu 1 298 -14 270 221 52 13 chr11 8430647 8430724 -142352829 - MIR3 SINE MIR -52 156 77 268 331 57 24 chr11 8432920 8433044 -142350509 + L2 LINE L2 3137 3264 -8 2434 66 0 10 chr11 8435056 8435359 -142348194 + AluSx SINE Alu 1 300 -12 2208 132 3 0 chr11 8435599 8435910 -142347643 + AluSx SINE Alu 1 312 0 1383 189 28 0 chr11 8436628 8436876 -142346677 - AluJo SINE Alu -57 255 1 2256 104 7 0 chr11 8437168 8437466 -142346087 + AluSp SINE Alu 1 300 -13 2309 92 3 3 chr11 8437565 8437857 -142345696 - AluSg SINE Alu -18 292 1 2495 72 0 7 chr11 8437857 8438162 -142345391 - AluSp SINE Alu -10 303 1 1549 117 44 0 chr11 8438170 8438419 -142345134 - L1MA5A LINE L1 -5 6292 6033 1749 183 0 7 chr11 8439017 8439323 -142344230 + AluJo SINE Alu 1 304 -8 180 111 0 0 chr11 8439863 8439890 -142343663 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 3703 103 13 26 chr11 8440243 8440777 -142342776 + MER1A DNA MER1_type 1 527 0 2444 88 0 0 chr11 8440871 8441166 -142342387 - AluSg SINE Alu -15 295 1 2733 222 88 9 chr11 8441339 8441448 -142342105 - L1MB7 LINE L1 -9 6175 6076 2082 112 53 0 chr11 8441448 8441733 -142341820 + AluSx SINE Alu 1 300 -12 2733 222 88 9 chr11 8441733 8442295 -142341258 - L1MB7 LINE L1 -108 6076 5451 1869 163 7 3 chr11 8443326 8443626 -142339927 + AluJo SINE Alu 1 301 -11 216 67 0 0 chr11 8443727 8443757 -142339796 + (TA)n Simple_repeat Simple_repeat 1 30 0 234 0 0 0 chr11 8443759 8443785 -142339768 + (TG)n Simple_repeat Simple_repeat 2 27 0 2240 100 0 10 chr11 8443911 8444211 -142339342 - AluSx SINE Alu -15 297 1 2410 68 0 23 chr11 8444256 8444565 -142338988 - AluY SINE Alu -9 302 1 25 0 0 0 chr11 8444582 8444607 -142338946 + AT_rich Low_complexity Low_complexity 1 25 0 957 143 14 0 chr11 8445998 8446145 -142337408 + FAM SINE Alu 27 175 -10 352 161 0 0 chr11 8446148 8446204 -142337349 + FLAM SINE Alu 76 131 -2 27 62 0 0 chr11 8449099 8449147 -142334406 + AT_rich Low_complexity Low_complexity 1 48 0 5081 190 55 30 chr11 8449149 8449680 -142333873 + L1MC1 LINE L1 3788 4305 -1841 983 166 12 12 chr11 8449680 8449843 -142333710 + FAM SINE Alu 2 164 -11 5081 190 55 30 chr11 8449843 8450557 -142332996 + L1MC1 LINE L1 4305 5063 -1083 5878 138 58 18 chr11 8450571 8451197 -142332356 + L1MC1 LINE L1 5237 5921 -412 2582 63 0 16 chr11 8451197 8451513 -142332040 + AluY SINE Alu 1 311 0 5878 138 58 18 chr11 8451513 8451932 -142331621 + L1MC1 LINE L1 5921 6322 -11 2129 115 14 0 chr11 8451935 8452222 -142331331 + AluSx SINE Alu 1 291 -21 1158 164 200 0 chr11 8452244 8452469 -142331084 + AluJb SINE Alu 21 290 -22 21 0 0 0 chr11 8452490 8452511 -142331042 + AT_rich Low_complexity Low_complexity 1 21 0 322 165 141 47 chr11 8452566 8452651 -142330902 + HY4 scRNA scRNA 1 93 0 324 228 331 7 chr11 8453234 8453379 -142330174 + MIR3 SINE MIR 15 206 -2 324 0 0 0 chr11 8454665 8454701 -142328852 + (TG)n Simple_repeat Simple_repeat 2 37 0 1672 217 6 9 chr11 8455018 8455363 -142328190 + MER2 DNA MER2_type 1 344 0 384 263 68 8 chr11 8455371 8455504 -142328049 - MIR SINE MIR -71 191 51 1417 216 57 3 chr11 8455767 8456063 -142327490 + AluJo SINE Alu 1 312 0 1198 229 138 52 chr11 8456343 8456490 -142327063 + MER113 DNA MER1_type? 1 134 -387 2327 88 0 7 chr11 8456490 8456787 -142326766 + AluSg SINE Alu 1 295 -15 1198 229 138 52 chr11 8456787 8456923 -142326630 + MER113 DNA MER1_type? 134 257 -264 1826 168 3 7 chr11 8456923 8457232 -142326321 + AluJb SINE Alu 1 308 -4 1198 229 138 52 chr11 8457232 8457389 -142326164 + MER113 DNA MER1_type? 257 480 -41 2360 86 0 7 chr11 8457480 8457782 -142325771 + AluSc SINE Alu 1 300 -9 2366 82 3 0 chr11 8458994 8459288 -142324265 + AluY SINE Alu 1 295 -16 2332 52 4 0 chr11 8459288 8459559 -142323994 + AluY SINE Alu 1 273 -38 200 329 25 13 chr11 8459592 8459671 -142323882 + MIR SINE MIR 108 187 -75 2178 107 3 10 chr11 8459712 8460002 -142323551 - AluSg SINE Alu -22 288 1 859 144 0 0 chr11 8460009 8460134 -142323419 - FLAM_C SINE Alu -18 125 1 323 300 67 25 chr11 8460532 8460652 -142322901 + L2 LINE L2 3137 3261 -11 1788 153 8 67 chr11 8460861 8461220 -142322333 + LTR64 LTR ERVK 1 338 -220 2229 88 3 0 chr11 8461396 8461701 -142321852 - AluY SINE Alu -5 306 1 516 275 141 58 chr11 8461808 8461961 -142321592 - MLT1K LTR MaLR -3 585 446 571 207 83 0 chr11 8461961 8462082 -142321471 + FLAM_A SINE Alu 1 131 -2 516 275 141 58 chr11 8462082 8462375 -142321178 - MLT1K LTR MaLR -142 446 102 1940 114 6 46 chr11 8464199 8464339 -142319214 + AluSx SINE Alu 1 145 -167 2092 98 0 14 chr11 8464339 8464635 -142318918 + AluSg1 SINE Alu 1 292 -17 1940 114 6 46 chr11 8464635 8464818 -142318735 + AluSx SINE Alu 145 311 -1 730 142 7 71 chr11 8465139 8465280 -142318273 + MER52A LTR ERV1 554 685 -1070 2328 79 3 0 chr11 8465578 8465881 -142317672 - AluSc SINE Alu -5 304 1 1792 156 3 3 chr11 8465891 8466180 -142317373 - AluSx SINE Alu -12 300 12 2295 175 66 2 chr11 8466808 8467231 -142316322 - MLT1C LTR MaLR 0 467 18 709 180 0 23 chr11 8467232 8467360 -142316193 + FLAM_A SINE Alu 5 129 -4 513 155 194 0 chr11 8467362 8467465 -142316088 + AluJo/FRAM SINE Alu 136 258 -54 1865 145 7 0 chr11 8467819 8468116 -142315437 + AluSq SINE Alu 1 299 -14 901 102 58 0 chr11 8469715 8469852 -142313701 + AluJb SINE Alu 168 312 0 1941 109 4 4 chr11 8471469 8471773 -142311780 - AluSx SINE Alu 0 314 11 1528 119 96 41 chr11 8472123 8472416 -142311137 + AluSx SINE Alu 2 310 -2 1099 136 0 0 chr11 8473637 8473799 -142309754 - FRAM SINE Alu -13 163 2 1570 160 12 58 chr11 8474086 8474411 -142309142 + AluJo SINE Alu 1 310 -2 1691 171 3 24 chr11 8475189 8475487 -142308066 - AluJo SINE Alu -20 292 1 2308 71 7 3 chr11 8476090 8476399 -142307154 + AluY SINE Alu 1 310 -1 310 289 164 19 chr11 8478938 8479042 -142304511 + MIR SINE MIR 25 143 -119 1949 112 13 39 chr11 8479771 8479907 -142303646 + AluSx SINE Alu 1 139 -173 2223 84 10 10 chr11 8479907 8480218 -142303335 + AluY SINE Alu 1 311 0 1949 112 13 39 chr11 8480218 8480386 -142303167 + AluSx SINE Alu 139 297 -15 1456 137 9 4 chr11 8480449 8480676 -142302877 + AluJo SINE Alu 85 312 0 304 197 61 0 chr11 8480730 8480796 -142302757 - FAM SINE Alu -17 158 89 1982 126 0 23 chr11 8482538 8482847 -142300706 + AluSx SINE Alu 1 302 -10 2356 63 0 25 chr11 8482847 8483166 -142300387 + AluY SINE Alu 1 311 0 380 226 165 9 chr11 8483211 8483326 -142300227 + L2 LINE L2 3177 3309 -4 2438 36 7 3 chr11 8483807 8484109 -142299444 - AluSp SINE Alu -10 303 1 22 0 0 0 chr11 8484109 8484131 -142299422 + AT_rich Low_complexity Low_complexity 1 22 0 222 45 0 106 chr11 8485047 8485113 -142298440 + (CGGGGG)n Simple_repeat Simple_repeat 2 60 0 252 0 0 0 chr11 8485295 8485323 -142298230 + (CA)n Simple_repeat Simple_repeat 2 29 0 1026 144 20 5 chr11 8485359 8485554 -142297999 + AluSg/x SINE Alu 95 292 -20 380 141 0 14 chr11 8486487 8486558 -142296995 + (TTCTCC)n Simple_repeat Simple_repeat 4 73 0 702 155 7 49 chr11 8486558 8486700 -142296853 - AluJ SINE Alu 0 312 177 404 121 0 15 chr11 8486694 8486760 -142296793 - AluJ SINE Alu -161 151 87 * 319 235 20 29 chr11 8486760 8486862 -142296691 + MIR SINE MIR 65 165 -97 228 325 48 32 chr11 8486858 8486984 -142296569 + L2 LINE L2 3186 3313 0 * 357 263 21 0 chr11 8486982 8487077 -142296476 + MIR SINE MIR 166 262 0 190 167 67 50 chr11 8487076 8487136 -142296417 - L2 LINE L2 -33 3280 3220 * 188 372 21 21 chr11 8487254 8487348 -142296205 - L2 LINE L2 -211 3061 2968 517 211 28 18 chr11 8487432 8487541 -142296012 + MIR SINE MIR 153 262 0 294 298 133 40 chr11 8487756 8487907 -142295646 + L2 LINE L2 3099 3263 -9 1652 161 0 21 chr11 8487970 8488261 -142295292 + AluJo SINE Alu 9 293 -19 26 64 0 0 chr11 8488432 8488479 -142295074 + AT_rich Low_complexity Low_complexity 1 47 0 2300 76 20 0 chr11 8489464 8489765 -142293788 + AluY SINE Alu 1 307 -4 2137 211 41 12 chr11 8489770 8490282 -142293271 - L1MB7 LINE L1 -15 6169 5643 6040 220 76 43 chr11 8490305 8492047 -142291506 - L1MB7 LINE L1 -901 5245 3431 1471 145 0 38 chr11 8492047 8492309 -142291244 - AluJb SINE Alu -5 307 56 6040 220 76 43 chr11 8492309 8492524 -142291029 - L1MB7 LINE L1 -2715 3431 3224 1335 126 9 23 chr11 8492533 8492748 -142290805 - AluSg/x SINE Alu -16 294 83 616 238 77 28 chr11 8492763 8492804 -142290749 + L1MEc LINE L1 2181 2219 -3996 1912 90 0 0 chr11 8492804 8493048 -142290505 + AluSc SINE Alu 1 244 -65 616 238 77 28 chr11 8493048 8493254 -142290299 + L1MEc LINE L1 2219 2399 -3816 646 178 0 0 chr11 8493254 8493361 -142290192 + MLT1D LTR MaLR 355 461 -44 3404 196 30 54 chr11 8493373 8493620 -142289933 + L1MEc LINE L1 2384 2636 -3579 2235 102 0 0 chr11 8493620 8493915 -142289638 - AluSg SINE Alu -15 295 1 3404 196 30 54 chr11 8493915 8494431 -142289122 + L1MEc LINE L1 2636 3122 -3093 2363 97 0 0 chr11 8494431 8494741 -142288812 + AluSx SINE Alu 1 310 -2 3404 196 30 54 chr11 8494741 8494913 -142288640 + L1MEc LINE L1 3122 3297 -2918 632 128 0 0 chr11 8494916 8495002 -142288551 + AluS SINE Alu 2 87 -226 2029 105 0 7 chr11 8495004 8495281 -142288272 - AluSq SINE Alu -38 275 1 2839 243 63 39 chr11 8495293 8495347 -142288206 - L1M4c LINE L1 -4320 2818 2767 1786 171 0 10 chr11 8495347 8495516 -142288037 - AluJb SINE Alu -10 302 136 2142 85 7 30 chr11 8495516 8495821 -142287732 - AluY SINE Alu -13 298 1 1786 171 0 10 chr11 8495821 8495956 -142287597 - AluJb SINE Alu -176 136 1 2839 243 63 39 chr11 8495956 8497180 -142286373 - L1M4c LINE L1 -4371 2767 1364 828 234 114 0 chr11 8497180 8497381 -142286172 - MER58A DNA MER1_type 0 224 1 2839 243 63 39 chr11 8497381 8497543 -142286010 - L1M4c LINE L1 -5774 1364 1207 264 59 0 0 chr11 8497566 8497600 -142285953 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 617 214 0 0 chr11 8497604 8497716 -142285837 - FLAM_A SINE Alu -18 115 4 388 268 24 16 chr11 8497768 8497891 -142285662 - L1M4c LINE L1 -5667 1188 1065 1127 250 54 11 chr11 8497903 8498183 -142285370 + AluJo SINE Alu 13 304 -8 340 351 80 12 chr11 8498186 8498437 -142285116 - L1M4c LINE L1 -5792 1063 796 246 256 78 124 chr11 8498556 8498697 -142284856 - L1M4c LINE L1 -6613 246 100 1865 102 3 67 chr11 8498697 8499010 -142284543 - AluSx SINE Alu -19 293 1 246 256 78 124 chr11 8499010 8499053 -142284500 - L1M4c LINE L1 -6759 100 57 2343 143 6 0 chr11 8499053 8499417 -142284136 - MER47A DNA MER2_type 0 366 1 246 256 78 124 chr11 8499417 8499489 -142284064 - L1M4c LINE L1 -6802 57 1 744 178 0 8 chr11 8500042 8500171 -142283382 + FLAM_C SINE Alu 1 128 -5 21 0 0 0 chr11 8500183 8500204 -142283349 + AT_rich Low_complexity Low_complexity 1 21 0 1765 179 8 11 chr11 8500204 8500561 -142282992 - L1MB3 LINE L1 -16 6403 6048 43481 52 1 1 chr11 8500564 8506697 -142276856 - L1PA5 LINE L1 -8 6146 11 3280 162 19 14 chr11 8506706 8507585 -142275968 - L1MB3 LINE L1 -346 6061 5180 2188 138 59 0 chr11 8507586 8507942 -142275611 - L1MB3 LINE L1 -5972 412 36 208 373 20 46 chr11 8508557 8508710 -142274843 + MIR3 SINE MIR 14 162 -46 2250 84 3 39 chr11 8508835 8509144 -142274409 + AluSp SINE Alu 1 298 -15 1901 127 26 39 chr11 8509730 8510037 -142273516 + AluJb SINE Alu 1 303 -9 954 163 35 23 chr11 8511476 8511648 -142271905 + FRAM SINE Alu 3 176 0 197 189 0 0 chr11 8511744 8511781 -142271772 + MIR SINE MIR 220 256 -6 197 343 50 20 chr11 8511931 8512030 -142271523 - MIR SINE MIR -82 126 25 32 0 0 0 chr11 8512936 8512968 -142270585 + AT_rich Low_complexity Low_complexity 1 32 0 1803 180 0 0 chr11 8512974 8513258 -142270295 - AluJo SINE Alu -28 284 1 288 326 69 100 chr11 8513416 8513677 -142269876 - L2 LINE L2 -8 3264 3012 405 307 122 22 chr11 8513767 8514037 -142269516 - L2 LINE L2 -970 2344 2048 1164 213 105 45 chr11 8514068 8514119 -142269434 + HAL1 LINE L1 1012 1058 -1449 2017 119 6 29 chr11 8514119 8514430 -142269123 + AluSx SINE Alu 1 304 -8 1164 213 105 45 chr11 8514430 8514805 -142268748 + HAL1 LINE L1 1058 1464 -1043 571 211 8 0 chr11 8514832 8514955 -142268598 + HAL1 LINE L1 1658 1781 -726 415 243 72 0 chr11 8515244 8515355 -142268198 - FRAM SINE Alu -11 165 47 288 0 0 0 chr11 8515579 8515611 -142267942 + (CA)n Simple_repeat Simple_repeat 2 33 0 229 250 13 66 chr11 8516203 8516279 -142267274 - MER5B DNA MER1_type -78 100 29 192 301 106 8 chr11 8516399 8516522 -142267031 + L2 LINE L2 2686 2820 -494 683 229 78 69 chr11 8516522 8516844 -142266709 - MLT1I LTR MaLR 0 409 73 3041 155 86 29 chr11 8516897 8517279 -142266274 - L1MB5 LINE L1 0 6174 5742 2167 107 31 0 chr11 8517279 8517569 -142265984 + AluSx SINE Alu 1 299 -13 3041 155 86 29 chr11 8517569 8517800 -142265753 - L1MB5 LINE L1 -432 5742 5526 812 89 0 0 chr11 8518441 8518542 -142265011 + HY3 scRNA scRNA 1 101 0 2549 66 0 7 chr11 8518555 8518860 -142264693 + AluY SINE Alu 1 303 -8 2214 106 0 7 chr11 8519048 8519349 -142264204 - AluSx SINE Alu 0 312 14 35 41 0 0 chr11 8519608 8519657 -142263896 + AT_rich Low_complexity Low_complexity 1 49 0 934 127 0 0 chr11 8519735 8519853 -142263700 - FLAM_C SINE Alu -15 118 1 1056 159 6 0 chr11 8519975 8520145 -142263408 - MER47A DNA MER2_type -194 172 2 1382 145 93 93 chr11 8520228 8520539 -142263014 + AluJo SINE Alu 1 311 -1 2425 70 0 0 chr11 8520616 8520915 -142262638 - AluY SINE Alu -12 299 1 1655 187 3 17 chr11 8521024 8521318 -142262235 - AluJo SINE Alu -22 290 1 414 342 0 0 chr11 8522177 8522297 -142261256 - L2 LINE L2 0 3272 3153 2271 94 7 3 chr11 8523444 8523752 -142259801 - AluSx SINE Alu -3 309 1 23 0 0 0 chr11 8525216 8525239 -142258314 + GC_rich Low_complexity Low_complexity 1 23 0 281 68 23 0 chr11 8525432 8525476 -142258077 + (CA)n Simple_repeat Simple_repeat 1 45 0 21 0 0 0 chr11 8526262 8526283 -142257270 + AT_rich Low_complexity Low_complexity 1 21 0 2193 92 24 0 chr11 8526283 8526576 -142256977 - AluSx SINE Alu -10 302 3 1378 109 95 5 chr11 8526860 8527071 -142256482 + MER30 DNA MER1_type 1 230 0 292 236 76 125 chr11 8527301 8527445 -142256108 - MIR SINE MIR -94 168 32 2224 125 0 13 chr11 8528077 8528388 -142255165 + AluJb SINE Alu 1 307 -5 225 271 4 4 chr11 8529170 8529228 -142254325 + MIR SINE MIR 21 75 -133 2664 45 0 0 chr11 8529703 8530014 -142253539 + AluY SINE Alu 1 311 0 2763 29 0 0 chr11 8530206 8530512 -142253041 - AluY SINE Alu -5 306 1 1698 191 0 7 chr11 8531718 8532027 -142251526 + AluJb SINE Alu 1 307 -5 2361 86 0 3 chr11 8532755 8533058 -142250495 + AluY SINE Alu 1 302 -9 30 0 0 0 chr11 8533118 8533148 -142250405 + AT_rich Low_complexity Low_complexity 1 30 0 676 175 0 0 chr11 8533156 8533259 -142250294 - FLAM_C SINE Alu -21 122 20 1811 169 0 16 chr11 8533677 8533985 -142249568 + AluJb SINE Alu 1 303 -9 35 54 0 0 chr11 8534060 8534116 -142249437 + AT_rich Low_complexity Low_complexity 1 56 0 5792 156 28 8 chr11 8534119 8534254 -142249299 - L1PB3 LINE L1 -1 6153 6022 186 43 0 0 chr11 8534254 8534277 -142249276 + (TCCC)n Simple_repeat Simple_repeat 1 23 0 5792 156 28 8 chr11 8534277 8536132 -142247421 - L1PB3 LINE L1 -132 6022 4125 2454 29 0 4 chr11 8536699 8537014 -142246539 + AluY SINE Alu 1 314 0 264 216 103 69 chr11 8537253 8537369 -142246184 + L2 LINE L2 2119 2238 -1076 * 616 292 65 0 chr11 8537335 8537520 -142246033 - MIR SINE MIR -7 255 59 217 274 62 53 chr11 8537525 8537638 -142245915 + L2 LINE L2 2579 2692 -622 675 279 183 6 chr11 8537761 8538094 -142245459 + L2 LINE L2 2920 3311 -2 615 258 36 6 chr11 8538422 8538589 -142244964 - MIR3 SINE MIR -21 187 16 309 307 128 38 chr11 8538642 8538961 -142244592 - L2 LINE L2 -361 2953 2606 1958 157 10 0 chr11 8539250 8539555 -142243998 + AluJo SINE Alu 1 308 -4 255 273 0 78 chr11 8540037 8540114 -142243439 - L2 LINE L2 -2 3311 3241 200 160 60 0 chr11 8541067 8541117 -142242436 + CT-rich Low_complexity Low_complexity 3 55 0 1714 180 3 53 chr11 8541119 8541318 -142242235 - AluJb SINE Alu -3 309 131 1706 146 4 0 chr11 8541318 8541571 -142241982 + AluSx SINE Alu 41 294 -18 1714 180 3 53 chr11 8541571 8541694 -142241859 - AluJb SINE Alu -181 131 3 2114 128 0 0 chr11 8541788 8542099 -142241454 + AluSx SINE Alu 1 311 0 1898 157 0 20 chr11 8542123 8542428 -142241125 + AluJo SINE Alu 1 299 -13 352 219 116 43 chr11 8542455 8542619 -142240934 - L1ME4a LINE L1 -73 6048 5873 1334 228 75 28 chr11 8542688 8542884 -142240669 - MLT1A1 LTR MaLR -1 364 146 2362 84 3 7 chr11 8542884 8543194 -142240359 - AluSq SINE Alu -4 309 1 1334 228 75 28 chr11 8543194 8543317 -142240236 - MLT1A1 LTR MaLR -219 146 30 668 272 53 7 chr11 8543568 8543779 -142239774 - L1ME3 LINE L1 -1 6161 5935 712 168 50 17 chr11 8543802 8543921 -142239632 - FLAM_C SINE Alu -19 124 2 339 181 234 0 chr11 8544349 8544443 -142239110 - L1ME4a LINE L1 -12 6109 5994 838 219 96 86 chr11 8544519 8544925 -142238628 - L1ME3 LINE L1 -357 5764 5355 6273 121 39 14 chr11 8544947 8545960 -142237593 - L1MA8 LINE L1 0 6291 5254 1924 146 0 0 chr11 8546143 8546423 -142237130 - AluJb SINE Alu -32 280 1 2204 126 3 0 chr11 8546432 8546734 -142236819 - AluSx SINE Alu -9 303 1 2237 109 7 0 chr11 8546762 8547065 -142236488 - AluSx SINE Alu -7 305 1 278 282 26 0 chr11 8547070 8547148 -142236405 + L2 LINE L2 3227 3306 -7 861 191 39 17 chr11 8547160 8547338 -142236215 + Charlie4 DNA MER1_type 17 198 -1763 182 345 18 0 chr11 8547404 8547459 -142236094 + MIR SINE MIR 201 256 -6 338 194 90 52 chr11 8547629 8547784 -142235769 - L1MC5 LINE L1 -198 7763 7603 21 36 0 0 chr11 8547878 8547906 -142235647 + AT_rich Low_complexity Low_complexity 1 28 0 272 234 16 0 chr11 8550353 8550417 -142233136 - L1ME4a LINE L1 -2032 5776 5712 673 269 97 4 chr11 8550515 8550742 -142232811 + Charlie2 DNA MER1_type 83 330 -2532 * 1413 198 156 80 chr11 8550732 8551236 -142232317 + Charlie2 DNA MER1_type 1855 2444 -418 1865 170 0 22 chr11 8551236 8551553 -142232000 + AluJo SINE Alu 3 312 0 1413 198 156 80 chr11 8551553 8551850 -142231703 + Charlie2 DNA MER1_type 2444 2717 -145 1799 169 3 3 chr11 8551868 8552158 -142231395 - AluJb SINE Alu -22 290 1 327 175 193 9 chr11 8552164 8552278 -142231275 + Charlie2 DNA MER1_type 2696 2830 -32 231 342 54 16 chr11 8552376 8552560 -142230993 - L2 LINE L2 -218 3054 2864 2275 81 30 0 chr11 8552968 8553263 -142230290 + AluSx SINE Alu 1 304 -8 1856 141 0 37 chr11 8554611 8554909 -142228644 - AluJo SINE Alu -15 297 11 207 0 0 0 chr11 8554930 8554953 -142228600 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 23 0 0 0 chr11 8554974 8554997 -142228556 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr11 8555072 8555094 -142228459 + AT_rich Low_complexity Low_complexity 1 22 0 273 248 28 50 chr11 8557408 8557549 -142226004 - L1M4 LINE L1 -1020 5126 4989 195 319 77 0 chr11 8557893 8557984 -142225569 + MIR SINE MIR 49 146 -116 2142 108 0 0 chr11 8558630 8558925 -142224628 + AluSg SINE Alu 1 295 -15 1936 136 0 3 chr11 8559260 8559555 -142223998 + AluJb SINE Alu 1 294 -18 2220 101 3 0 chr11 8559557 8559865 -142223688 + AluSg SINE Alu 1 309 -1 233 229 16 0 chr11 8560211 8560272 -142223281 - L2 LINE L2 -811 2503 2442 265 204 0 0 chr11 8560667 8560711 -142222842 + MIR SINE MIR 209 252 -10 696 144 0 0 chr11 8561298 8561416 -142222137 + FLAM_A SINE Alu 19 136 0 272 250 120 10 chr11 8561663 8561763 -142221790 - MIR3 SINE MIR -94 114 4 211 325 18 65 chr11 8561812 8561981 -142221572 + MIR SINE MIR 72 232 -30 299 314 88 51 chr11 8562181 8562318 -142221235 + MIR3 SINE MIR 2 143 -65 1778 144 0 18 chr11 8562336 8562620 -142220933 + AluJo SINE Alu 13 291 -21 561 282 58 0 chr11 8563355 8563511 -142220042 - MIR SINE MIR -49 213 49 441 128 32 85 chr11 8563564 8563658 -142219895 - L1MC3 LINE L1 0 7785 7697 1347 189 65 77 chr11 8564908 8565311 -142218242 - MER21B LTR ERV1 -51 812 415 288 0 0 0 chr11 8565315 8565347 -142218206 + (TG)n Simple_repeat Simple_repeat 2 33 0 2046 123 0 16 chr11 8565936 8566253 -142217300 - AluSx SINE Alu 0 312 1 200 323 15 0 chr11 8566877 8566942 -142216611 + MIR SINE MIR 197 262 0 297 242 0 0 chr11 8567169 8567260 -142216293 + (CA)n Simple_repeat Simple_repeat 1 91 0 247 200 69 77 chr11 8567758 8567888 -142215665 + MER113 DNA MER1_type? 2 130 -391 2263 202 68 31 chr11 8567928 8568448 -142215105 - L1MC4a LINE L1 -94 7714 7172 1621 164 7 20 chr11 8568448 8568746 -142214807 - AluJb SINE Alu -18 294 1 2263 202 68 31 chr11 8568746 8568769 -142214784 - L1MC4a LINE L1 -636 7172 7151 1950 124 0 3 chr11 8569573 8569879 -142213674 - AluSx SINE Alu 0 305 1 236 303 91 40 chr11 8570969 8571144 -142212409 - MIR3 SINE MIR -4 204 21 1758 175 0 16 chr11 8571292 8571595 -142211958 - AluJb SINE Alu -14 298 1 381 300 39 89 chr11 8572074 8572434 -142211119 - L2 LINE L2 -101 3171 2830 1511 184 27 7 chr11 8573126 8573425 -142210128 - AluJo SINE Alu -7 305 1 255 211 19 0 chr11 8573434 8573486 -142210067 - MARNA DNA Mariner -372 214 162 1957 108 0 71 chr11 8574119 8574442 -142209111 - AluSx SINE Alu -12 300 1 831 187 0 0 chr11 8574732 8574871 -142208682 + FLAM_C SINE Alu 2 140 -3 480 280 13 38 chr11 8575096 8575253 -142208300 - MIR SINE MIR -50 212 60 440 229 76 0 chr11 8575289 8575394 -142208159 + MIR SINE MIR 150 262 0 867 151 17 62 chr11 8575553 8575732 -142207821 - AluJ SINE Alu 0 312 142 213 154 0 0 chr11 8576269 8576308 -142207245 + (TG)n Simple_repeat Simple_repeat 2 40 0 271 207 73 24 chr11 8576392 8576412 -142207141 + MER21B LTR ERV1 5 23 -840 342 0 0 0 chr11 8576412 8576450 -142207103 + (GA)n Simple_repeat Simple_repeat 2 39 0 271 207 73 24 chr11 8576450 8576511 -142207042 + MER21B LTR ERV1 23 90 -773 942 128 20 20 chr11 8576651 8576800 -142206753 - AluJ SINE Alu -163 149 1 2025 139 3 3 chr11 8576817 8577126 -142206427 - AluSx SINE Alu -2 310 2 1647 164 11 28 chr11 8578263 8578550 -142205003 + AluJo SINE Alu 1 282 -30 450 0 0 0 chr11 8578553 8578603 -142204950 + (TAA)n Simple_repeat Simple_repeat 2 51 0 1087 128 0 0 chr11 8578796 8578960 -142204593 + FAM SINE Alu 1 45 -4 2053 113 20 0 chr11 8579400 8579693 -142203860 + AluSq SINE Alu 1 299 -14 194 310 42 0 chr11 8580079 8580150 -142203403 + L2 LINE L2 2119 2192 -1122 926 314 75 26 chr11 8580229 8580682 -142202871 - L2 LINE L2 0 3313 2839 858 217 30 0 chr11 8580773 8580939 -142202614 + FRAM SINE Alu 1 171 -5 202 255 21 0 chr11 8580958 8581005 -142202548 + GA-rich Low_complexity Low_complexity 5 52 0 381 102 0 0 chr11 8581256 8581315 -142202238 + (GA)n Simple_repeat Simple_repeat 1 59 0 320 299 99 30 chr11 8583188 8583389 -142200164 + MIR SINE MIR 4 218 -44 183 80 0 0 chr11 8585163 8585188 -142198365 + (A)n Simple_repeat Simple_repeat 1 25 0 306 0 0 0 chr11 8585457 8585491 -142198062 + (TG)n Simple_repeat Simple_repeat 2 35 0 857 223 84 44 chr11 8586897 8587148 -142196405 + MIR SINE MIR 2 262 0 2187 107 3 0 chr11 8587253 8587552 -142196001 + AluSx SINE Alu 1 300 -12 673 254 66 31 chr11 8588252 8588480 -142195073 + MIR SINE MIR 21 256 -6 525 307 0 13 chr11 8588531 8588684 -142194869 + MIR3 SINE MIR 16 166 -42 2118 103 0 0 chr11 8588704 8588994 -142194559 - AluSx SINE Alu -22 290 1 798 262 78 25 chr11 8589500 8589744 -142193809 + MIR SINE MIR 6 262 0 2043 123 7 0 chr11 8589785 8590078 -142193475 - AluSx SINE Alu -17 295 1 542 202 0 0 chr11 8590079 8590178 -142193375 - AluSg/x SINE Alu -4 306 208 203 238 24 0 chr11 8590278 8590320 -142193233 + G-rich Low_complexity Low_complexity 1 43 0 1943 114 24 0 chr11 8591197 8591487 -142192066 - AluSx SINE Alu -15 297 1 551 199 252 0 chr11 8592221 8592372 -142191181 - MER5A DNA MER1_type 0 189 1 197 239 22 0 chr11 8593462 8593508 -142190045 - MIR SINE MIR -134 74 28 182 61 0 30 chr11 8593743 8593776 -142189777 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 3174 169 59 45 chr11 8593862 8594559 -142188994 + L1MB4 LINE L1 5474 6180 0 1126 279 45 45 chr11 8594639 8595191 -142188362 - L1ME LINE L1 -303 5818 5267 390 299 106 75 chr11 8595369 8595541 -142188012 - L1ME LINE L1 -1038 5108 4924 2049 103 3 3 chr11 8595541 8595823 -142187730 - AluSx SINE Alu -29 283 2 390 299 106 75 chr11 8595823 8595904 -142187649 - L1ME LINE L1 -1222 4924 4847 1930 119 7 7 chr11 8595970 8596263 -142187290 - AluSx SINE Alu -19 293 1 206 209 0 23 chr11 8596741 8596784 -142186769 - L2 LINE L2 -16 3297 3256 1544 182 3 24 chr11 8596964 8597261 -142186292 - AluJb SINE Alu -21 291 1 180 375 16 16 chr11 8597502 8597630 -142185923 - L2 LINE L2 -213 3059 2932 260 130 0 0 chr11 8597778 8597824 -142185729 - MLT1G1 LTR MaLR -18 577 532 614 99 0 141 chr11 8597886 8598007 -142185546 - AluJo SINE Alu -124 188 85 356 297 0 0 chr11 8598050 8598168 -142185385 - L1MC5 LINE L1 -533 7428 7311 * 571 250 99 16 chr11 8598152 8598344 -142185209 - L1MC4 LINE L1 -547 7495 7288 419 191 23 183 chr11 8598389 8598651 -142184902 - L1MC5 LINE L1 -32 7929 7710 741 164 8 15 chr11 8600272 8600406 -142183147 + FLAM_A SINE Alu 1 133 0 575 265 160 10 chr11 8600598 8600798 -142182755 + MIR SINE MIR 6 235 -27 1784 145 6 25 chr11 8600900 8601218 -142182335 - AluJo SINE Alu 0 312 1 2293 90 0 0 chr11 8602929 8603228 -142180325 - AluSx SINE Alu -8 304 6 995 168 0 66 chr11 8603347 8603573 -142179980 - AluJo SINE Alu -15 297 87 656 237 109 62 chr11 8604109 8604481 -142179072 - L1ME4a LINE L1 -3 6118 5716 1470 175 8 27 chr11 8604481 8604744 -142178809 + AluJo SINE Alu 45 302 -10 656 237 109 62 chr11 8604744 8604868 -142178685 - L1ME4a LINE L1 -405 5716 5599 2487 70 0 3 chr11 8604884 8605186 -142178367 - AluY SINE Alu -10 301 1 520 251 126 13 chr11 8605719 8606124 -142177429 - L1ME LINE L1 -525 5641 5191 243 0 0 0 chr11 8606148 8606175 -142177378 + (TG)n Simple_repeat Simple_repeat 2 28 0 394 313 22 8 chr11 8606175 8606309 -142177244 - L1ME4a LINE L1 -537 5584 5449 285 345 35 9 chr11 8606333 8606449 -142177104 + L2 LINE L2 318 436 -2878 190 340 35 50 chr11 8606547 8606688 -142176865 + L2 LINE L2 628 766 -2548 209 358 103 24 chr11 8607212 8607377 -142176176 + L2 LINE L2 2871 3048 -224 2311 102 3 9 chr11 8607976 8608291 -142175262 + AluSp SINE Alu 1 313 0 272 222 56 11 chr11 8611331 8611421 -142172132 + L2 LINE L2 3176 3269 -3 282 260 110 0 chr11 8611607 8611707 -142171846 - L2 LINE L2 -1 3271 3161 577 296 64 27 chr11 8611774 8612071 -142171482 - L3 LINE CR1 -195 1382 1075 2573 185 82 25 chr11 8613059 8613168 -142170385 - MER119 DNA MER1_type 0 583 482 1938 132 35 3 chr11 8613168 8613456 -142170097 - AluSx SINE Alu -15 297 1 2573 185 82 25 chr11 8613456 8613898 -142169655 - MER119 DNA MER1_type -101 482 1 2199 75 85 0 chr11 8614243 8614525 -142169028 - AluSg SINE Alu -4 306 1 470 274 46 46 chr11 8614665 8614840 -142168713 + MIR SINE MIR 59 233 -29 2318 101 13 0 chr11 8614962 8615270 -142168283 - AluSx SINE Alu 0 312 1 2243 218 86 2 chr11 8615349 8615945 -142167608 - L1ME3A LINE L1 -2 6168 5523 1979 145 7 0 chr11 8616166 8616462 -142167091 - AluJb SINE Alu -14 298 1 33 0 0 0 chr11 8618044 8618077 -142165476 + AT_rich Low_complexity Low_complexity 1 33 0 2338 99 0 3 chr11 8618951 8619255 -142164298 - AluSc SINE Alu -6 303 1 29 28 0 0 chr11 8619649 8619685 -142163868 + AT_rich Low_complexity Low_complexity 1 36 0 734 169 0 31 chr11 8619706 8619836 -142163717 - AluJo SINE Alu -176 136 11 333 270 54 0 chr11 8621579 8621690 -142161863 - MIR3 SINE MIR -33 175 59 669 92 63 7 chr11 8622206 8622485 -142161068 + (CA)n Simple_repeat Simple_repeat 1 294 0 200 280 0 0 chr11 8622489 8622539 -142161014 + CT-rich Low_complexity Low_complexity 2 51 0 604 285 178 18 chr11 8625502 8625885 -142157668 - L3 LINE CR1 -516 1061 618 542 163 0 0 chr11 8625892 8625984 -142157569 + L1 LINE L1 3685 3776 -2370 6454 76 11 26 chr11 8626002 8626428 -142157125 + L1PA13 LINE L1 5254 5685 -478 2017 130 3 36 chr11 8626428 8626735 -142156818 + AluSx SINE Alu 2 298 -14 6454 76 11 26 chr11 8626735 8627218 -142156335 + L1PA13 LINE L1 5685 6149 -14 2431 90 0 0 chr11 8627224 8627534 -142156019 + AluY SINE Alu 1 310 -1 541 87 0 87 chr11 8627569 8627625 -142155928 + L1 LINE L1 3775 3822 -2324 2123 127 55 19 chr11 8627625 8627987 -142155566 - THE1C LTR MaLR 0 375 1 541 87 0 87 chr11 8627987 8628022 -142155531 + L1 LINE L1 3822 3858 -2288 217 371 150 0 chr11 8628057 8628224 -142155329 - L3 LINE CR1 -976 601 410 282 222 25 12 chr11 8628230 8628311 -142155242 + (TA)n Simple_repeat Simple_repeat 2 83 0 181 253 120 0 chr11 8628335 8628410 -142155143 - MIR SINE MIR -13 249 166 187 275 11 77 chr11 8628539 8628630 -142154923 - L2 LINE L2 -4 3268 3184 1283 151 66 37 chr11 8628958 8629230 -142154323 + L1MA9 LINE L1 6033 6312 0 1448 157 0 0 chr11 8629401 8629640 -142153913 + AluJb SINE Alu 68 306 0 1593 142 55 18 chr11 8629833 8630107 -142153446 - AluJo SINE Alu -16 296 13 44 0 0 0 chr11 8630247 8630291 -142153262 + AT_rich Low_complexity Low_complexity 1 44 0 2176 125 7 0 chr11 8630291 8630586 -142152967 - AluSx SINE Alu -15 297 1 362 294 7 34 chr11 8630630 8630776 -142152777 - MER112 DNA MER1_type -10 250 109 534 219 8 0 chr11 8630909 8631032 -142152521 + HAL1 LINE L1 1658 1781 -726 394 243 72 0 chr11 8631321 8631432 -142152121 - FRAM SINE Alu -1 165 47 387 0 0 0 chr11 8631656 8631699 -142151854 + (CA)n Simple_repeat Simple_repeat 2 44 0 207 250 13 66 chr11 8632288 8632364 -142151189 - MER5B DNA MER1_type -78 100 29 689 229 78 69 chr11 8632607 8632929 -142150624 - MLT1I LTR MaLR 0 409 73 3027 153 86 29 chr11 8632982 8633364 -142150189 - L1MB5 LINE L1 0 6174 5742 2199 103 31 0 chr11 8633364 8633654 -142149899 + AluSx SINE Alu 1 299 -13 3027 153 86 29 chr11 8633654 8633885 -142149668 - L1MB5 LINE L1 -432 5742 5526 773 89 0 0 chr11 8634526 8634627 -142148926 + HY3 scRNA scRNA 1 101 0 2409 50 0 7 chr11 8634640 8634960 -142148593 + AluY SINE Alu 1 318 0 231 216 103 69 chr11 8635199 8635315 -142148238 + L2 LINE L2 2119 2238 -1076 * 565 292 65 0 chr11 8635281 8635466 -142148087 - MIR SINE MIR -7 255 59 185 283 62 53 chr11 8635471 8635584 -142147969 + L2 LINE L2 2579 2692 -622 581 282 183 6 chr11 8635707 8636040 -142147513 + L2 LINE L2 2920 3311 -2 1707 177 0 18 chr11 8686442 8686719 -142096834 + AluJb SINE Alu 27 298 -14 253 303 91 40 chr11 8686867 8687042 -142096511 + MIR3 SINE MIR 21 204 -4 1904 153 3 3 chr11 8689471 8689766 -142093787 + AluJo SINE Alu 15 309 -3 2012 118 28 0 chr11 8689991 8690280 -142093273 - AluSx SINE Alu -15 297 1 565 199 252 0 chr11 8691014 8691165 -142092388 - MER5A DNA MER1_type 0 189 1 202 239 22 0 chr11 8692255 8692301 -142091252 - MIR SINE MIR -134 74 28 182 61 0 30 chr11 8692536 8692569 -142090984 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 3004 169 59 45 chr11 8692655 8693352 -142090201 + L1MB4 LINE L1 5474 6180 0 1052 279 45 45 chr11 8693432 8693984 -142089569 - L1ME LINE L1 -303 5818 5267 273 290 130 23 chr11 8694367 8694498 -142089055 - MER5A DNA MER1_type -22 167 23 185 327 72 39 chr11 8694796 8694949 -142088604 + L2 LINE L2 2703 2860 -454 272 356 19 0 chr11 8696596 8696700 -142086853 + MIR3 SINE MIR 81 186 -22 622 262 92 35 chr11 8697431 8697660 -142085893 + L2 LINE L2 2015 2256 -1058 1276 288 101 37 chr11 8697660 8698433 -142085120 + L2 LINE L2 2419 3248 -65 713 146 0 85 chr11 8698433 8698563 -142084990 - AluJb SINE Alu -15 297 179 210 222 37 19 chr11 8698563 8698617 -142084936 + L2 LINE L2 3258 3312 -1 967 270 78 48 chr11 8699299 8699785 -142083768 - MLT1H LTR MaLR 0 549 5 439 281 66 37 chr11 8699921 8699994 -142083559 - MIR3 SINE MIR -28 234 165 2258 97 7 16 chr11 8699994 8700304 -142083249 - AluSq SINE Alu -6 307 1 439 281 66 37 chr11 8700304 8700447 -142083106 - MIR3 SINE MIR -97 165 19 205 217 33 17 chr11 8700655 8700715 -142082838 + L2 LINE L2 3178 3238 -75 180 359 119 25 chr11 8700891 8701050 -142082503 + L3b LINE CR1 1277 1450 -133 685 197 24 8 chr11 8701280 8701407 -142082146 + L2 LINE L2 3184 3312 -1 676 261 19 12 chr11 8702403 8702564 -142080989 + MIR SINE MIR 52 213 -49 469 265 94 18 chr11 8702901 8703071 -142080482 - MER63A DNA MER1_type -1 209 27 2049 103 3 3 chr11 8703324 8703606 -142079947 - AluSx SINE Alu -29 283 2 1930 119 7 7 chr11 8703753 8704046 -142079507 - AluSx SINE Alu -19 293 1 206 209 0 23 chr11 8704523 8704566 -142078987 - L2 LINE L2 -16 3297 3256 1544 182 3 24 chr11 8704746 8705043 -142078510 - AluJb SINE Alu -21 291 1 180 375 16 16 chr11 8705284 8705412 -142078141 - L2 LINE L2 -213 3059 2932 260 130 0 0 chr11 8705560 8705606 -142077947 - MLT1G1 LTR MaLR -18 577 532 614 99 0 141 chr11 8705668 8705789 -142077764 - AluJo SINE Alu -124 188 85 356 297 0 0 chr11 8705832 8705950 -142077603 - L1MC5 LINE L1 -533 7428 7311 * 571 250 99 16 chr11 8705934 8706126 -142077427 - L1MC4 LINE L1 -547 7495 7288 419 191 23 183 chr11 8706171 8706433 -142077120 - L1MC5 LINE L1 -32 7929 7710 741 164 8 15 chr11 8708054 8708188 -142075365 + FLAM_A SINE Alu 1 133 0 575 265 160 10 chr11 8708380 8708580 -142074973 + MIR SINE MIR 6 235 -27 1784 145 6 25 chr11 8708682 8709000 -142074553 - AluJo SINE Alu 0 312 1 2151 97 3 7 chr11 8710669 8710969 -142072584 - AluSx SINE Alu -8 304 6 1563 108 0 0 chr11 8711245 8711457 -142072096 + AluSg/x SINE Alu 89 300 -12 673 254 66 31 chr11 8712157 8712385 -142071168 + MIR SINE MIR 21 256 -6 525 307 0 13 chr11 8712436 8712589 -142070964 + MIR3 SINE MIR 16 166 -42 2118 103 0 0 chr11 8712609 8712899 -142070654 - AluSx SINE Alu -22 290 1 798 262 78 25 chr11 8713405 8713649 -142069904 + MIR SINE MIR 6 262 0 2043 123 7 0 chr11 8713690 8713983 -142069570 - AluSx SINE Alu -17 295 1 1586 166 51 10 chr11 8713984 8714280 -142069273 - AluJb SINE Alu -4 308 1 1954 143 7 3 chr11 8714297 8714605 -142068948 - AluSx SINE Alu -2 310 2 1647 164 11 28 chr11 8715742 8716029 -142067524 + AluJo SINE Alu 1 282 -30 450 0 0 0 chr11 8716032 8716082 -142067471 + (TAA)n Simple_repeat Simple_repeat 2 51 0 1087 128 0 0 chr11 8716275 8716439 -142067114 + FAM SINE Alu 1 45 -4 2053 113 20 0 chr11 8716879 8717172 -142066381 + AluSq SINE Alu 1 299 -14 194 310 42 0 chr11 8717558 8717629 -142065924 + L2 LINE L2 2119 2192 -1122 926 314 75 26 chr11 8717708 8718161 -142065392 - L2 LINE L2 0 3313 2839 734 231 44 0 chr11 8718255 8718415 -142065138 + FRAM SINE Alu 5 171 -5 353 326 22 7 chr11 8718434 8718569 -142064984 + GA-rich Low_complexity Low_complexity 3 139 0 381 300 39 89 chr11 8719408 8719768 -142063785 - L2 LINE L2 -101 3171 2830 485 282 48 27 chr11 8720380 8720568 -142062985 - L2 LINE L2 -5 3308 3117 767 277 124 38 chr11 8720723 8721149 -142062404 - L2 LINE L2 -410 2904 2442 265 204 0 0 chr11 8721544 8721588 -142061965 + MIR SINE MIR 209 252 -10 765 183 0 0 chr11 8722110 8722246 -142061307 + FLAM_A SINE Alu 1 136 0 272 250 120 10 chr11 8722493 8722593 -142060960 - MIR3 SINE MIR -94 114 4 211 325 18 65 chr11 8722642 8722811 -142060742 + MIR SINE MIR 72 232 -30 303 324 76 44 chr11 8723011 8723169 -142060384 + MIR SINE MIR 2 163 -65 1730 147 0 18 chr11 8723170 8723449 -142060104 + AluJo SINE Alu 18 291 -21 381 102 0 0 chr11 8724351 8724410 -142059143 + (GA)n Simple_repeat Simple_repeat 1 59 0 320 299 99 30 chr11 8726282 8726483 -142057070 + MIR SINE MIR 4 218 -44 183 80 0 0 chr11 8728257 8728282 -142055271 + (A)n Simple_repeat Simple_repeat 1 25 0 306 0 0 0 chr11 8728551 8728585 -142054968 + (TG)n Simple_repeat Simple_repeat 2 35 0 857 223 84 44 chr11 8729991 8730242 -142053311 + MIR SINE MIR 2 262 0 412 164 0 125 chr11 8730422 8730526 -142053027 - AluJo SINE Alu -125 177 87 605 227 128 34 chr11 8731062 8731415 -142052138 - L1ME4a LINE L1 -3 6118 5733 1367 174 8 30 chr11 8731434 8731698 -142051855 + AluJo SINE Alu 45 302 -10 2334 73 0 3 chr11 8731838 8732140 -142051413 - AluY SINE Alu -10 301 1 500 251 126 13 chr11 8732673 8733078 -142050475 - L1ME4a LINE L1 -525 5641 5191 243 0 0 0 chr11 8733102 8733129 -142050424 + (TG)n Simple_repeat Simple_repeat 2 28 0 394 313 22 8 chr11 8733129 8733263 -142050290 - L1ME LINE L1 -537 5584 5449 318 345 35 9 chr11 8733287 8733403 -142050150 + L2 LINE L2 318 436 -2878 236 312 50 64 chr11 8733501 8733642 -142049911 + L2 LINE L2 628 766 -2548 304 330 82 79 chr11 8734002 8734608 -142048945 + L2 LINE L2 2694 3313 0 2138 102 6 10 chr11 8734930 8735244 -142048309 + AluSp SINE Alu 1 313 0 281 233 56 11 chr11 8738283 8738373 -142045180 + L2 LINE L2 3176 3269 -3 300 236 0 0 chr11 8738555 8738644 -142044909 + (TG)n Simple_repeat Simple_repeat 1 89 0 200 323 15 0 chr11 8738871 8738936 -142044617 - MIR SINE MIR 0 262 197 2046 123 0 16 chr11 8739560 8739877 -142043676 + AluSx SINE Alu 1 312 0 539 289 58 0 chr11 8740620 8740776 -142042777 - MIR SINE MIR -49 213 49 441 128 32 85 chr11 8740829 8740923 -142042630 - L1MC3 LINE L1 0 7785 7697 880 199 96 58 chr11 8742172 8742433 -142041120 - MER21B LTR ERV1 -51 812 542 186 253 67 53 chr11 8743311 8743386 -142040167 + L2 LINE L2 2864 2939 -374 231 185 192 39 chr11 8743786 8743916 -142039637 + L2 LINE L2 1325 1474 -1840 898 238 27 38 chr11 8743921 8744182 -142039371 + L2 LINE L2 2717 2974 -340 2288 76 3 0 chr11 8744394 8744685 -142038868 + AluSp SINE Alu 1 292 -21 3036 231 77 7 chr11 8744693 8745678 -142037875 + L1ME3A LINE L1 5120 6168 -2 2193 101 13 0 chr11 8745757 8746065 -142037488 + AluSx SINE Alu 1 312 0 536 274 46 46 chr11 8746187 8746362 -142037191 - MIR SINE MIR -29 233 59 2076 75 85 0 chr11 8746502 8746784 -142036769 + AluSg SINE Alu 1 306 -4 2213 189 79 38 chr11 8747129 8747579 -142035974 + MER119 DNA MER1_type 1 480 -103 1820 132 35 3 chr11 8747579 8747867 -142035686 + AluSx SINE Alu 1 297 -15 2213 189 79 38 chr11 8747867 8747976 -142035577 + MER119 DNA MER1_type 480 583 0 697 296 64 27 chr11 8748964 8749261 -142034292 + L3 LINE CR1 1075 1382 -195 293 267 118 0 chr11 8749274 8749428 -142034125 + L2 LINE L2 3139 3271 -1 208 286 0 0 chr11 8749586 8749642 -142033911 + L3 LINE CR1 1519 1574 -3 1658 184 27 7 chr11 8750067 8750366 -142033187 - AluJo SINE Alu -7 305 1 245 211 19 0 chr11 8750375 8750427 -142033126 - MARNA DNA Mariner -372 214 162 2116 108 0 71 chr11 8751060 8751383 -142032170 - AluSx SINE Alu -12 300 1 865 186 0 0 chr11 8751672 8751812 -142031741 + FLAM_C SINE Alu 1 140 -3 453 280 13 38 chr11 8752037 8752194 -142031359 - MIR SINE MIR -50 212 60 410 229 76 0 chr11 8752230 8752335 -142031218 + MIR SINE MIR 150 262 0 873 138 17 63 chr11 8752494 8752668 -142030885 - FRAM SINE Alu 0 176 11 213 154 0 0 chr11 8753210 8753249 -142030304 + (TG)n Simple_repeat Simple_repeat 2 40 0 256 207 73 24 chr11 8753333 8753353 -142030200 + MER21B LTR ERV1 5 23 -840 342 0 0 0 chr11 8753353 8753391 -142030162 + (GA)n Simple_repeat Simple_repeat 2 39 0 256 207 73 24 chr11 8753391 8753452 -142030101 + MER21B LTR ERV1 23 90 -773 1124 222 87 42 chr11 8753500 8753833 -142029720 - MSTD LTR MaLR -48 348 1 776 216 61 22 chr11 8753833 8753952 -142029601 + MER21B LTR ERV1 280 410 -453 288 0 0 0 chr11 8753952 8753984 -142029569 + (CA)n Simple_repeat Simple_repeat 2 33 0 776 216 61 22 chr11 8753984 8754043 -142029510 + MER21B LTR ERV1 410 465 -398 640 223 37 53 chr11 8754235 8754423 -142029130 + MIR SINE MIR 33 217 -45 332 174 184 0 chr11 8754583 8754681 -142028872 + L2 LINE L2 3139 3254 -18 208 331 65 8 chr11 8754807 8754931 -142028622 - MIR SINE MIR -88 174 44 187 158 0 53 chr11 8756105 8756143 -142027410 - L2 LINE L2 -37 3235 3200 204 40 0 0 chr11 8756202 8756227 -142027326 + (CAT)n Simple_repeat Simple_repeat 2 26 0 1042 126 0 0 chr11 8756264 8756407 -142027146 + AluJb SINE Alu 1 143 -169 4739 180 36 15 chr11 8757010 8757988 -142025565 - L1MB7 LINE L1 -9 6175 5219 306 0 0 0 chr11 8757988 8758022 -142025531 + (TG)n Simple_repeat Simple_repeat 1 34 0 4739 180 36 15 chr11 8758022 8758799 -142024754 - L1MB7 LINE L1 -965 5219 4325 2116 154 0 0 chr11 8758799 8759097 -142024456 - AluSx SINE Alu -14 298 1 4739 180 36 15 chr11 8759097 8759257 -142024296 - L1MB7 LINE L1 -1859 4325 4170 628 193 64 138 chr11 8759470 8759578 -142023975 + L2 LINE L2 3008 3122 -191 2350 102 3 0 chr11 8759578 8759881 -142023672 - AluSx SINE Alu -8 304 1 628 193 64 138 chr11 8759881 8760098 -142023455 + L2 LINE L2 3122 3309 -4 308 188 42 21 chr11 8760162 8760258 -142023295 - MER113 DNA MER1_type? -422 99 2 1613 97 9 8 chr11 8760307 8760555 -142022998 - pTR5 LTR ERV1 -2042 396 136 374 232 30 0 chr11 8760558 8760657 -142022896 - LTR30 LTR ERV1 -80 642 541 3264 76 0 18 chr11 8760658 8761116 -142022437 - pTR5 LTR ERV1 -417 2021 1572 506 249 93 72 chr11 8761844 8762081 -142021472 + MIR SINE MIR 11 252 -10 265 250 0 48 chr11 8763356 8763440 -142020113 + CT-rich Low_complexity Low_complexity 3 82 0 344 222 121 0 chr11 8764820 8764919 -142018634 + L2 LINE L2 3193 3303 -10 421 273 8 8 chr11 8765045 8765166 -142018387 - MIR3 SINE MIR -11 197 77 290 258 22 22 chr11 8765601 8765690 -142017863 - MIR3 SINE MIR -14 194 106 2128 243 78 5 chr11 8766002 8766554 -142016999 - MLT1G1 LTR MaLR 0 595 4 290 267 61 46 chr11 8766563 8766694 -142016859 - MLT1G1-int LTR MaLR -18 1353 1221 996 118 0 0 chr11 8766696 8766831 -142016722 + AluJb SINE Alu 1 135 -177 1669 176 20 14 chr11 8766831 8767126 -142016427 + AluJb SINE Alu 1 297 -15 321 250 14 93 chr11 8767197 8767337 -142016216 - MLT1G1-int LTR MaLR -188 1183 1055 2528 76 0 0 chr11 8767617 8767918 -142015635 + AluSp SINE Alu 1 301 -12 1801 161 36 20 chr11 8768002 8768307 -142015246 + AluJb SINE Alu 1 310 -2 2310 116 0 0 chr11 8768489 8768782 -142014771 - AluSx SINE Alu -19 293 1 284 190 170 0 chr11 8768827 8768903 -142014650 - L1MA10 LINE L1 0 6334 6236 207 69 0 0 chr11 8768903 8768932 -142014621 + (CA)n Simple_repeat Simple_repeat 1 29 0 284 190 170 0 chr11 8768932 8768955 -142014598 - L1MA10 LINE L1 -98 6236 6218 2401 89 7 0 chr11 8768964 8769266 -142014287 - AluSp SINE Alu -9 304 1 457 349 80 0 chr11 8769380 8769618 -142013935 - MLT1G1-int LTR MaLR -830 541 285 1239 230 107 44 chr11 8769678 8769849 -142013704 - MLT1G3 LTR MaLR 0 555 396 1896 145 3 29 chr11 8769849 8770159 -142013394 + AluJo SINE Alu 1 302 -10 1239 230 107 44 chr11 8770159 8770503 -142013050 - MLT1G3 LTR MaLR -159 396 1 2024 162 3 13 chr11 8771830 8772145 -142011408 - AluJb SINE Alu 0 312 1 249 274 95 0 chr11 8772741 8772825 -142010728 - MIR SINE MIR -131 131 40 218 266 121 57 chr11 8773016 8773140 -142010413 - L2 LINE L2 0 3272 3141 515 209 178 31 chr11 8773678 8773869 -142009684 - L2 LINE L2 -1121 2193 1975 422 279 21 14 chr11 8773936 8774076 -142009477 + L2 LINE L2 1524 1664 -1650 1553 175 46 4 chr11 8774089 8774352 -142009201 + AluJo SINE Alu 6 279 -33 348 194 0 37 chr11 8774361 8774469 -142009084 + GA-rich Low_complexity Low_complexity 1 104 0 732 226 57 5 chr11 8774472 8774684 -142008869 + L2 LINE L2 1699 1921 -1393 820 120 0 0 chr11 8774789 8774897 -142008656 - FLAM_C SINE Alu -30 113 6 481 316 61 67 chr11 8777585 8777898 -142005655 - L2 LINE L2 -1 3271 2961 28 29 0 0 chr11 8778144 8778179 -142005374 + AT_rich Low_complexity Low_complexity 1 35 0 1805 164 11 3 chr11 8778184 8778471 -142005082 + AluJo SINE Alu 3 291 -21 423 38 0 0 chr11 8778473 8778526 -142005027 + (TG)n Simple_repeat Simple_repeat 2 54 0 505 338 57 11 chr11 8778837 8779118 -142004435 - L2 LINE L2 -1057 2257 1964 237 256 85 37 chr11 8779853 8780018 -142003535 + MIR SINE MIR 11 230 -32 202 259 37 25 chr11 8780715 8780796 -142002757 + MIR3 SINE MIR 79 160 -48 2196 82 64 3 chr11 8780827 8781109 -142002444 + AluSq SINE Alu 1 299 -14 979 163 144 9 chr11 8781144 8781359 -142002194 - MLT1A1 LTR MaLR -117 248 5 * 1969 237 33 10 chr11 8781349 8781830 -142001723 - LTR40a LTR ERVL -27 492 1 2386 67 0 3 chr11 8782175 8782459 -142001094 - AluY SINE Alu -16 295 13 203 149 0 21 chr11 8786189 8786236 -141997317 + (GGAA)n Simple_repeat Simple_repeat 3 48 0 248 104 42 0 chr11 8786342 8786390 -141997163 + CT-rich Low_complexity Low_complexity 3 52 0 745 207 75 6 chr11 8786397 8786571 -141996982 + MER20 DNA MER1_type 32 217 -2 221 297 77 0 chr11 8787939 8788030 -141995523 - L2 LINE L2 -6 3307 3210 361 23 0 0 chr11 8788874 8788917 -141994636 + 5S rRNA rRNA 1 43 -78 2241 106 17 0 chr11 8789551 8789843 -141993710 + AluSx SINE Alu 1 297 -15 2407 72 0 7 chr11 8792924 8793216 -141990337 + AluSg SINE Alu 1 290 -20 855 157 42 6 chr11 8794299 8794465 -141989088 - L1MB8 LINE L1 -23 6155 5984 462 281 137 67 chr11 8794474 8794712 -141988841 + L2 LINE L2 2853 3073 -240 2412 79 3 3 chr11 8794712 8795017 -141988536 - AluSp SINE Alu -8 305 1 462 281 137 67 chr11 8795017 8795209 -141988344 + L2 LINE L2 3073 3313 0 369 0 0 0 chr11 8795806 8795847 -141987706 + (TG)n Simple_repeat Simple_repeat 1 41 0 324 263 105 0 chr11 8796817 8796912 -141986641 - MIR SINE MIR -77 185 81 2427 84 3 3 chr11 8797632 8797931 -141985622 - AluSp SINE Alu -14 299 1 399 267 69 0 chr11 8798071 8798187 -141985366 + MIR SINE MIR 59 182 -80 475 262 152 92 chr11 8799757 8800320 -141983233 - L2 LINE L2 -1 3312 2702 325 263 281 55 chr11 8800443 8800758 -141982795 - L2 LINE L2 -1496 1818 1576 2144 102 3 24 chr11 8800758 8801053 -141982500 + AluSx SINE Alu 1 289 -23 325 263 281 55 chr11 8801053 8801213 -141982340 - L2 LINE L2 -1738 1576 1235 214 296 171 5 chr11 8803816 8804015 -141979538 - L2 LINE L2 -2365 949 718 3525 115 22 28 chr11 8804096 8804677 -141978876 - LTR9B LTR ERV1 0 644 67 609 114 48 6 chr11 8804677 8804915 -141978638 + AluSc SINE Alu 6 286 -23 695 223 59 3 chr11 8807096 8807108 -141976445 + MIR SINE MIR 52 62 -200 1814 131 22 47 chr11 8807108 8807428 -141976125 - AluJo SINE Alu 0 312 1 695 223 59 3 chr11 8807428 8807612 -141975941 + MIR SINE MIR 62 262 0 2138 82 67 0 chr11 8808209 8808479 -141975074 + AluSq SINE Alu 1 288 -25 2006 136 8 58 chr11 8809999 8810179 -141973374 + MER2 DNA MER2_type 2 158 -186 1721 177 7 7 chr11 8810179 8810495 -141973058 - AluJo SINE Alu 0 316 1 2006 136 8 58 chr11 8810495 8810674 -141972879 + MER2 DNA MER2_type 158 344 0 280 304 59 20 chr11 8810900 8811002 -141972551 - MIR SINE MIR -68 140 35 2184 78 14 17 chr11 8812964 8813259 -141970294 + AluSg SINE Alu 1 294 -16 727 115 107 66 chr11 8813399 8813521 -141970032 - FLAM_C SINE Alu -6 127 1 1502 198 146 33 chr11 8813853 8814447 -141969106 - MER20B DNA MER1_type 0 783 53 935 153 0 7 chr11 8814448 8814592 -141968961 + FLAM_C SINE Alu 1 143 0 1718 153 62 42 chr11 8814949 8815365 -141968188 - MSTB1 LTR MaLR -2 430 1 381 262 99 0 chr11 8816501 8816642 -141966911 + Charlie2a DNA MER1_type 1509 1663 -1199 2400 62 28 0 chr11 8817351 8817640 -141965913 + AluY SINE Alu 1 297 -14 189 234 125 0 chr11 8817659 8817723 -141965830 - MIR SINE MIR -74 188 117 1436 103 41 0 chr11 8817880 8818075 -141965478 - AluSp SINE Alu -32 281 79 189 216 39 39 chr11 8818643 8818694 -141964859 - MER5A DNA MER1_type -42 147 97 2142 94 28 0 chr11 8818741 8819029 -141964524 + AluSq SINE Alu 1 296 -17 1913 108 20 17 chr11 8821289 8821586 -141961967 + AluSx SINE Alu 1 298 -14 25 0 0 0 chr11 8822350 8822375 -141961178 + GC_rich Low_complexity Low_complexity 1 25 0 860 154 0 7 chr11 8823264 8823407 -141960146 + FLAM_C SINE Alu 1 142 -1 2665 40 0 0 chr11 8823893 8824191 -141959362 + AluY SINE Alu 1 298 -13 393 336 181 32 chr11 8824203 8825268 -141958285 + L2 LINE L2 1746 2969 -345 377 325 6 44 chr11 8825335 8825499 -141958054 - MIR SINE MIR -62 146 6 552 268 48 59 chr11 8826889 8827347 -141956206 - L1ME4a LINE L1 -196 5925 5472 767 183 15 0 chr11 8827697 8827828 -141955725 - FLAM_C SINE Alu 0 133 1 254 363 44 0 chr11 8827828 8827919 -141955634 + MIR SINE MIR 59 153 -109 327 237 128 51 chr11 8827926 8828082 -141955471 - L2 LINE L2 0 3313 3146 24 77 0 0 chr11 8828345 8828397 -141955156 + AT_rich Low_complexity Low_complexity 1 52 0 232 211 77 0 chr11 8828455 8828507 -141955046 + Charlie8 DNA MER1_type 1358 1413 -1004 5196 165 87 87 chr11 8828841 8829304 -141954249 + Charlie1a DNA MER1_type 1 462 -2299 2112 83 34 0 chr11 8829304 8829606 -141953947 + AluSc SINE Alu 9 319 0 5196 165 87 87 chr11 8829606 8829644 -141953909 + Charlie1a DNA MER1_type 462 498 -2263 2191 126 3 0 chr11 8829644 8829938 -141953615 + AluSp SINE Alu 1 295 -18 5196 165 87 87 chr11 8829938 8830640 -141952913 + Charlie1a DNA MER1_type 498 1210 -1551 1698 169 17 33 chr11 8830640 8830960 -141952593 + AluJo SINE Alu 1 312 0 5196 165 87 87 chr11 8830960 8831207 -141952346 + Charlie1a DNA MER1_type 1210 1455 0 2346 55 45 7 chr11 8832098 8832388 -141951165 + AluY SINE Alu 1 301 -10 2069 122 6 39 chr11 8832395 8832706 -141950847 + AluJb SINE Alu 1 301 -11 283 245 75 47 chr11 8832712 8832818 -141950735 + MIR SINE MIR 28 136 -126 195 311 170 19 chr11 8834011 8834117 -141949436 + L2 LINE L2 3146 3267 -5 268 100 25 0 chr11 8834275 8834315 -141949238 - Alu SINE Alu -259 41 1 21 36 0 0 chr11 8834710 8834738 -141948815 + AT_rich Low_complexity Low_complexity 1 28 0 1680 114 0 87 chr11 8834863 8835008 -141948545 + L1PA15 LINE L1 5892 5999 -166 2245 104 7 10 chr11 8835008 8835316 -141948237 + AluSx SINE Alu 4 310 -2 1680 114 0 87 chr11 8835316 8835469 -141948084 + L1PA15 LINE L1 5999 6164 -1 2223 111 3 0 chr11 8835668 8835956 -141947597 - AluSx SINE Alu -23 289 1 584 256 74 80 chr11 8836236 8836432 -141947121 + MLT1G1 LTR MaLR 10 247 -348 2457 74 3 3 chr11 8836432 8836742 -141946811 + AluSx SINE Alu 1 310 -2 584 256 74 80 chr11 8836742 8836850 -141946703 + MLT1G1 LTR MaLR 247 354 -241 4523 142 19 11 chr11 8837000 8837782 -141945771 + L1MB3 LINE L1 5254 6041 -142 1529 183 15 15 chr11 8837778 8838116 -141945437 - L1M4 LINE L1 -816 5330 4993 * 1861 110 14 52 chr11 8838199 8838490 -141945063 + AluSx SINE Alu 3 282 -30 677 258 17 77 chr11 8838559 8838792 -141944761 + MIR SINE MIR 19 237 -25 2451 95 0 6 chr11 8838948 8839263 -141944290 - AluSq SINE Alu 0 313 1 2439 59 28 0 chr11 8839355 8839642 -141943911 - AluY SINE Alu -16 295 1 376 308 115 0 chr11 8839726 8839856 -141943697 - L2 LINE L2 -17 3255 3111 243 286 66 33 chr11 8840528 8840619 -141942934 + L2 LINE L2 3177 3270 -2 185 229 0 0 chr11 8840701 8840736 -141942817 - MIR SINE MIR -12 250 216 1324 102 67 9 chr11 8840952 8841177 -141942376 + Tigger7 DNA MER2_type 2254 2491 0 311 364 71 7 chr11 8842710 8842864 -141940689 - MIR3 SINE MIR -23 185 22 268 358 96 3 chr11 8843441 8843705 -141939848 + L2 LINE L2 2738 3031 -241 885 138 66 42 chr11 8843836 8844003 -141939550 - MER58A DNA MER1_type -11 213 43 213 330 133 26 chr11 8844122 8844355 -141939198 - L2 LINE L2 -342 2972 2715 1456 137 32 40 chr11 8844363 8844612 -141938941 + AluJo SINE Alu 66 312 0 618 299 43 9 chr11 9044845 9045056 -141738497 + MIR SINE MIR 1 218 -44 321 87 0 0 chr11 9045198 9045244 -141738309 - AluJo SINE Alu -10 292 247 1564 151 0 20 chr11 9045310 9045555 -141737998 - AluJo SINE Alu -72 240 1 342 266 65 43 chr11 9045557 9045696 -141737857 - HAL1 LINE L1 -2135 372 231 30 27 0 0 chr11 9045805 9045842 -141737711 + AT_rich Low_complexity Low_complexity 1 37 0 223 242 48 16 chr11 9046224 9046286 -141737267 - MIR SINE MIR -116 146 83 311 332 54 36 chr11 9046406 9046629 -141736924 - LTR67 LTR ERVL -295 262 36 1699 218 14 6 chr11 9046923 9047286 -141736267 - MLT2D LTR ERVL -48 366 1 560 273 246 25 chr11 9047870 9048497 -141735056 - L2 LINE L2 -248 3065 2305 2274 164 3 8 chr11 9048750 9049115 -141734438 + MLT1A1 LTR MaLR 3 365 0 1421 283 72 4 chr11 9050440 9050899 -141732654 + L2 LINE L2 2824 3313 0 22 0 0 0 chr11 9051165 9051187 -141732366 + AT_rich Low_complexity Low_complexity 1 22 0 226 305 0 0 chr11 9052343 9052402 -141731151 - MIR SINE MIR -63 145 87 253 311 57 62 chr11 9052489 9052682 -141730871 - L2 LINE L2 -210 3062 2871 2593 59 0 0 chr11 9053196 9053499 -141730054 - AluY SINE Alu -8 303 1 2241 168 12 22 chr11 9053772 9054172 -141729381 + MSTD LTR MaLR 1 396 0 186 219 0 0 chr11 9054516 9054548 -141729005 + L2 LINE L2 3024 3055 -258 406 302 191 41 chr11 9054844 9055361 -141728192 - L2 LINE L2 -342 2972 2378 182 286 66 33 chr11 9056762 9056853 -141726700 - MIR3 SINE MIR -31 177 84 2148 109 7 0 chr11 9056868 9057180 -141726373 - AluSx SINE Alu 0 314 1 249 316 84 32 chr11 9057700 9057890 -141725663 + MIR SINE MIR 2 201 -61 3500 176 66 18 chr11 9057902 9058614 -141724939 - LTR39 LTR ERV1 0 783 38 869 215 25 0 chr11 9058617 9058780 -141724773 - MIR SINE MIR -23 239 73 1446 213 82 26 chr11 9059750 9060203 -141723350 - L1ME LINE L1 -480 5686 5185 2031 146 0 3 chr11 9060203 9060504 -141723049 - AluJb SINE Alu -12 300 1 1446 213 82 26 chr11 9060504 9060728 -141722825 - L1ME LINE L1 -981 5185 4975 279 262 37 19 chr11 9060833 9060940 -141722613 - HAL1b LINE L1 -49 1299 1191 672 83 4 78 chr11 9061044 9061311 -141722242 + AluSc SINE Alu 1 309 0 21 0 0 0 chr11 9061376 9061397 -141722156 + AT_rich Low_complexity Low_complexity 1 21 0 294 287 86 17 chr11 9062178 9062352 -141721201 - L1ME LINE L1 -1227 4919 4734 480 310 139 24 chr11 9062442 9062729 -141720824 - L1ME LINE L1 -1515 4631 4312 345 293 40 30 chr11 9062787 9062985 -141720568 - L1ME LINE L1 -1924 4222 4023 376 338 88 7 chr11 9063008 9063156 -141720397 - L1ME LINE L1 -2275 3871 3712 455 33 16 0 chr11 9063753 9063814 -141719739 + (CA)n Simple_repeat Simple_repeat 2 63 0 312 275 83 25 chr11 9063991 9064111 -141719442 - L1MC4 LINE L1 -1335 6707 6581 265 191 33 40 chr11 9064120 9064272 -141719281 + (CATATA)n Simple_repeat Simple_repeat 2 152 0 358 202 0 101 chr11 9064275 9064374 -141719179 - L1MC4 LINE L1 -1340 6702 6614 353 204 0 112 chr11 9064286 9064384 -141719169 + L1MC4 LINE L1 6617 6703 -1339 * 250 233 17 0 chr11 9064416 9064476 -141719077 + L1M4 LINE L1 2957 3017 -3129 591 222 83 44 chr11 9064481 9064804 -141718749 - MLT1I LTR MaLR -2 407 82 28 0 0 0 chr11 9064952 9064980 -141718573 + AT_rich Low_complexity Low_complexity 1 28 0 3545 96 14 0 chr11 9065048 9065558 -141717995 - Tigger4(Zombi) DNA MER2_type -3 2728 2212 461 195 0 0 chr11 9065563 9065645 -141717908 - Tigger4(Zombi) DNA MER2_type -2649 82 1 26 0 0 0 chr11 9065711 9065737 -141717816 + AT_rich Low_complexity Low_complexity 1 26 0 1671 99 4 0 chr11 9066022 9066255 -141717298 + L1PA11 LINE L1 5939 6172 -2 232 222 0 28 chr11 9066344 9066416 -141717137 + (TA)n Simple_repeat Simple_repeat 2 71 0 43 20 0 0 chr11 9066460 9066510 -141717043 + AT_rich Low_complexity Low_complexity 1 50 0 415 89 18 0 chr11 9066627 9066683 -141716870 - Alu SINE Alu -260 58 2 811 334 72 28 chr11 9066687 9066869 -141716684 - L2 LINE L2 -2783 531 358 2430 95 3 0 chr11 9066869 9067175 -141716378 + AluSc SINE Alu 1 307 -2 811 334 72 28 chr11 9067175 9067453 -141716100 - L2 LINE L2 -2956 358 51 2256 123 0 0 chr11 9067686 9067986 -141715567 + AluSx SINE Alu 1 300 -12 387 273 21 103 chr11 9068746 9068940 -141714613 - MIR3 SINE MIR -30 178 1 2381 86 0 17 chr11 9069191 9069493 -141714060 - AluSc SINE Alu -12 297 1 577 178 68 0 chr11 9070110 9070256 -141713297 + L1MB8 LINE L1 6017 6172 -6 729 323 92 24 chr11 9070256 9071166 -141712387 + L1MC4a LINE L1 4904 5233 -913 903 176 0 48 chr11 9071319 9071484 -141712069 + FRAM SINE Alu 1 156 -20 502 286 121 57 chr11 9071586 9072024 -141711529 + L2 LINE L2 2567 3029 -243 182 37 37 0 chr11 9073156 9073183 -141710370 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 290 252 99 46 chr11 9073511 9073662 -141709891 + MLT1J2 LTR MaLR 1 159 -291 2137 142 0 3 chr11 9075411 9075720 -141707833 + AluSx SINE Alu 1 308 -4 229 241 102 77 chr11 9075920 9076194 -141707359 + L2 LINE L2 2472 2752 -562 * 630 283 23 39 chr11 9076184 9076446 -141707107 - MIR SINE MIR 0 262 6 1446 260 94 15 chr11 9076481 9076989 -141706564 + L2 LINE L2 2780 3312 -1 238 328 39 8 chr11 9076995 9077123 -141706430 + L2 LINE L2 2919 3050 -222 388 325 33 8 chr11 9077559 9077679 -141705874 - MER91C DNA MER1_type 0 140 18 548 291 35 35 chr11 9078290 9078489 -141705064 - MIR SINE MIR -56 206 8 235 140 0 0 chr11 9080085 9080135 -141703418 - LTR66 LTR ERVL -167 443 394 220 213 21 0 chr11 9080210 9080257 -141703296 + (TGGA)n Simple_repeat Simple_repeat 1 48 0 224 264 11 0 chr11 9080360 9080447 -141703106 + (TGGA)n Simple_repeat Simple_repeat 4 91 0 210 329 13 0 chr11 9080458 9080537 -141703016 + (TGGA)n Simple_repeat Simple_repeat 3 82 0 180 111 0 0 chr11 9080561 9080588 -141702965 + (TGGA)n Simple_repeat Simple_repeat 4 30 0 228 67 0 0 chr11 9081886 9081916 -141701637 + (CCCCAG)n Simple_repeat Simple_repeat 4 33 0 266 210 0 16 chr11 9081946 9082008 -141701545 + G-rich Low_complexity Low_complexity 3 63 0 441 54 0 0 chr11 9082793 9082849 -141700704 + (TG)n Simple_repeat Simple_repeat 2 57 0 541 311 99 77 chr11 9082858 9083312 -141700241 + L2 LINE L2 2805 3268 -4 937 227 77 57 chr11 9083349 9083596 -141699957 + MIR SINE MIR 1 252 -10 213 256 122 24 chr11 9083603 9083685 -141699868 - L2 LINE L2 -41 3231 3142 421 274 103 0 chr11 9083776 9083893 -141699660 + MIR SINE MIR 28 156 -106 229 237 158 0 chr11 9084360 9084436 -141699117 + MIR SINE MIR 8 95 -167 884 270 103 71 chr11 9084619 9084796 -141698757 + L2 LINE L2 2505 2675 -638 2297 113 7 0 chr11 9084796 9085106 -141698447 - AluSx SINE Alu 0 312 1 884 270 103 71 chr11 9085106 9085415 -141698138 + L2 LINE L2 2675 3016 -297 480 252 42 8 chr11 9085680 9085799 -141697754 + L2 LINE L2 3180 3302 -11 389 274 44 15 chr11 9086179 9086314 -141697239 + MIR3 SINE MIR 32 170 -38 284 315 18 45 chr11 9086299 9086410 -141697143 - MIR SINE MIR -84 178 71 * 258 227 61 0 chr11 9086422 9086488 -141697065 + L2 LINE L2 3158 3227 -86 207 362 103 0 chr11 9086573 9086689 -141696864 + L2 LINE L2 3139 3266 -6 808 279 150 19 chr11 9086810 9087346 -141696207 - L2 LINE L2 0 3313 2685 439 229 31 0 chr11 9089255 9089372 -141694181 - MIR SINE MIR -54 154 46 2252 117 0 0 chr11 9089968 9090267 -141693286 + AluSx SINE Alu 1 299 -13 210 344 16 24 chr11 9090627 9090752 -141692801 - L2 LINE L2 -943 2371 2248 240 310 121 14 chr11 9091508 9091667 -141691886 - MIR SINE MIR -3 205 19 246 81 0 0 chr11 9091917 9091954 -141691599 + (TCCA)n Simple_repeat Simple_repeat 1 37 0 205 197 30 15 chr11 9094894 9094960 -141688593 + GA-rich Low_complexity Low_complexity 6 72 0 452 323 44 34 chr11 9095151 9095371 -141688182 + L1MEd LINE L1 845 1072 -5047 360 64 0 0 chr11 9095371 9095418 -141688135 + (CA)n Simple_repeat Simple_repeat 2 48 0 452 323 44 34 chr11 9095418 9095581 -141687972 + L1MEd LINE L1 1072 1232 -4887 322 274 38 0 chr11 9095941 9096047 -141687506 + L1MEd LINE L1 2457 2566 -3563 2307 101 3 0 chr11 9096139 9096436 -141687117 + AluSp SINE Alu 2 299 -14 1054 147 0 0 chr11 9096436 9096613 -141686940 + AluSg/x SINE Alu 134 310 0 237 193 21 186 chr11 9096827 9096870 -141686683 - L1ME3A LINE L1 -88 6082 6034 2314 84 0 32 chr11 9096870 9097180 -141686373 + AluY SINE Alu 1 300 -11 237 193 21 186 chr11 9097180 9097281 -141686272 - L1ME3A LINE L1 -136 6034 5962 1426 131 9 9 chr11 9097284 9097505 -141686048 + MER1B DNA MER1_type 1 221 -76 225 241 0 25 chr11 9097582 9097661 -141685892 - L1ME3A LINE L1 -208 5962 5886 321 311 14 54 chr11 9098004 9098152 -141685401 - MLT1K LTR MaLR -302 286 145 315 343 21 7 chr11 9099307 9099450 -141684103 - MIR SINE MIR -44 218 74 389 238 48 0 chr11 9101367 9101472 -141682081 - MIR SINE MIR -97 165 56 546 281 0 0 chr11 9101543 9101689 -141681864 - L1ME3 LINE L1 -48 6114 5969 251 279 38 0 chr11 9101817 9101896 -141681657 + MER94 DNA DNA 27 108 -26 352 228 185 0 chr11 9103498 9103590 -141679963 + MER91A DNA MER1_type 2 110 -86 603 27 0 0 chr11 9103703 9103776 -141679777 + (TG)n Simple_repeat Simple_repeat 2 74 0 3971 198 33 21 chr11 9106063 9106921 -141676632 - Tigger6a DNA MER2_type -214 869 2 800 189 51 0 chr11 9106927 9107102 -141676451 - L1ME3 LINE L1 -332 5830 5647 195 167 167 69 chr11 9107294 9107366 -141676187 - MIR SINE MIR -55 153 75 234 128 0 0 chr11 9108131 9108170 -141675383 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 285 322 91 77 chr11 9108179 9108465 -141675088 - L2 LINE L2 -1 3271 2982 189 269 0 103 chr11 9109742 9109820 -141673733 - L2 LINE L2 -247 3025 2956 712 247 30 12 chr11 9109844 9110010 -141673543 - MIR SINE MIR -42 220 52 213 263 9 53 chr11 9110010 9110124 -141673429 + (CA)n Simple_repeat Simple_repeat 2 110 0 372 277 126 69 chr11 9111271 9111502 -141672051 + L1ME4a LINE L1 5838 6081 -40 333 0 0 0 chr11 9111507 9111544 -141672009 + (TG)n Simple_repeat Simple_repeat 2 38 0 1816 167 3 7 chr11 9112414 9112708 -141670845 - AluJo SINE Alu -19 293 1 270 297 169 49 chr11 9112808 9113311 -141670242 + L3 LINE CR1 768 1344 -233 1313 212 73 42 chr11 9113311 9113763 -141669790 + MLT1C LTR MaLR 2 467 0 270 297 169 49 chr11 9113763 9113808 -141669745 + L3 LINE CR1 1344 1382 -195 830 148 15 11 chr11 9113815 9114085 -141669468 + CT-rich Low_complexity Low_complexity 1 271 0 1917 113 65 3 chr11 9114087 9114379 -141669174 - AluJo SINE Alu -2 310 1 1171 220 49 20 chr11 9115264 9115568 -141667985 - MLT1H LTR MaLR -186 363 51 1047 239 5 93 chr11 9116549 9116959 -141666594 - MLT1A2 LTR MaLR 0 374 1 1484 137 26 72 chr11 9117850 9118157 -141665396 + THE1C LTR MaLR 83 375 0 2258 110 3 3 chr11 9118751 9119051 -141664502 - AluSc SINE Alu -9 300 1 6226 189 20 13 chr11 9119533 9120239 -141663314 + L1P5 LINE L1 3837 4537 -1617 2392 114 2 53 chr11 9120239 9120463 -141663090 - THE1C LTR MaLR 0 375 177 2232 82 4 0 chr11 9120463 9120755 -141662798 + AluSp SINE Alu 17 309 0 2392 114 2 53 chr11 9120755 9120924 -141662629 - THE1C LTR MaLR -198 177 1 6226 189 20 13 chr11 9120924 9121829 -141661724 + L1P5 LINE L1 4537 5461 -693 4254 101 0 9 chr11 9121829 9122472 -141661081 - L1PA13 LINE L1 -4 6159 5523 6226 189 20 13 chr11 9122472 9122488 -141661065 + L1P5 LINE L1 5461 5475 -679 1956 127 0 0 chr11 9122488 9122747 -141660806 + AluSq SINE Alu 1 259 -54 295 219 47 0 chr11 9123033 9123097 -141660456 + MIR3 SINE MIR 112 178 -30 261 241 23 69 chr11 9123151 9123213 -141660340 + MIR3 SINE MIR 111 169 -39 2112 124 34 8 chr11 9123213 9123568 -141659985 + THE1B LTR MaLR 1 364 0 261 241 23 69 chr11 9123568 9123592 -141659961 + MIR3 SINE MIR 169 193 -15 219 167 0 0 chr11 9123642 9123684 -141659869 + (CA)n Simple_repeat Simple_repeat 2 43 0 455 313 33 0 chr11 9125050 9125200 -141658353 + MIR SINE MIR 21 175 -87 494 252 20 54 chr11 9126904 9127051 -141656502 + MER91A DNA MER1_type 14 155 -41 1023 250 68 78 chr11 9127151 9127699 -141655854 - MLT1H LTR MaLR 0 549 8 297 185 0 0 chr11 9129688 9129742 -141653811 + L2 LINE L2 3258 3311 -2 218 321 108 20 chr11 9129977 9130148 -141653405 + MIR SINE MIR 30 212 -50 23 0 0 0 chr11 9130813 9130836 -141652717 + AT_rich Low_complexity Low_complexity 1 23 0 542 243 76 43 chr11 9131709 9131842 -141651711 + MIR SINE MIR 60 202 -60 383 205 0 0 chr11 9131842 9131920 -141651633 + MER116 DNA Mariner 1 78 -2 542 243 76 43 chr11 9131920 9131971 -141651582 + MIR SINE MIR 202 250 -12 2823 20 0 0 chr11 9132307 9132612 -141650941 - AluY SINE Alu -6 305 1 28 29 0 0 chr11 9132708 9132743 -141650810 + AT_rich Low_complexity Low_complexity 1 35 0 361 268 112 7 chr11 9132743 9132890 -141650663 + L1MCa LINE L1 1918 6973 -1349 259 266 13 0 chr11 9133625 9133704 -141649849 - MIR3 SINE MIR -52 156 77 211 224 0 35 chr11 9136605 9136663 -141646890 + CT-rich Low_complexity Low_complexity 4 59 0 1810 155 11 14 chr11 9136782 9137066 -141646487 + AluJo SINE Alu 14 296 -16 767 228 17 22 chr11 9137381 9137561 -141645992 - MER5A DNA MER1_type -7 182 4 607 211 8 0 chr11 9139411 9139534 -141644019 + L1MA8 LINE L1 6166 6289 -2 254 260 208 19 chr11 9139595 9139749 -141643804 - L3 LINE CR1 -102 1475 1293 508 320 137 17 chr11 9139762 9139862 -141643691 - MIR SINE MIR 0 262 175 1912 106 0 72 chr11 9139862 9140183 -141643370 - AluY SINE Alu -13 298 1 508 320 137 17 chr11 9140183 9140316 -141643237 - MIR SINE MIR -87 175 1 309 341 48 3 chr11 9140330 9140538 -141643015 - L3 LINE CR1 -344 1233 964 249 303 56 0 chr11 9140885 9140974 -141642579 - MIR3 SINE MIR -33 175 82 230 267 43 60 chr11 9141339 9141455 -141642098 + MIR SINE MIR 27 140 -68 207 0 0 0 chr11 9141458 9141477 -141642076 + (GA)n Simple_repeat Simple_repeat 1 42 0 207 0 0 0 chr11 9141477 9141500 -141642053 + (GA)n Simple_repeat Simple_repeat 2 24 0 1736 155 0 14 chr11 9141587 9141864 -141641689 - AluJo SINE Alu -39 273 1 1559 117 0 30 chr11 9141980 9142211 -141641342 - L1PA8A LINE L1 0 6131 5908 281 317 8 8 chr11 9142679 9142802 -141640751 + GA-rich Low_complexity Low_complexity 5 127 0 422 292 153 19 chr11 9143602 9143818 -141639735 - MLT1L LTR MaLR 0 615 371 1340 177 56 16 chr11 9144757 9145006 -141638547 - AluJo SINE Alu -53 259 1 236 253 26 148 chr11 9145276 9145505 -141638048 + L2 LINE L2 2998 3198 -74 275 260 0 0 chr11 9145543 9145616 -141637937 + (TGGA)n Simple_repeat Simple_repeat 1 73 0 219 376 178 12 chr11 9145617 9145875 -141637678 + L3 LINE CR1 358 658 -919 524 314 0 0 chr11 9149290 9149465 -141634088 + (CCTCG)n Simple_repeat Simple_repeat 5 179 0 326 236 97 56 chr11 9150017 9150160 -141633393 + MIR3 SINE MIR 21 171 -37 310 313 30 55 chr11 9150175 9150376 -141633177 + L2 LINE L2 3083 3278 -35 303 337 96 16 chr11 9150922 9151109 -141632444 + MIR SINE MIR 2 203 -59 567 319 23 61 chr11 9151319 9151582 -141631971 - MIR SINE MIR -8 254 2 345 257 7 44 chr11 9151644 9151780 -141631773 + CT-rich Low_complexity Low_complexity 4 134 0 231 36 0 0 chr11 9154400 9154428 -141629125 + (CAGCC)n Simple_repeat Simple_repeat 5 32 0 210 35 0 105 chr11 9154483 9154540 -141629013 + (CTGGGG)n Simple_repeat Simple_repeat 1 51 0 249 277 53 21 chr11 9154674 9154768 -141628785 - L2 LINE L2 -39 3233 3137 204 246 8 119 chr11 9155088 9155222 -141628331 + L2 LINE L2 3154 3272 0 215 231 0 19 chr11 9155996 9156048 -141627505 + (CAGG)n Simple_repeat Simple_repeat 3 53 0 2179 90 30 10 chr11 9156585 9156886 -141626667 + AluSg1 SINE Alu 1 307 -2 288 287 17 40 chr11 9157652 9157666 -141625887 + (CATATA)n Simple_repeat Simple_repeat 1 14 -156 2006 85 6 82 chr11 9157666 9157983 -141625570 + AluSx SINE Alu 1 293 -19 288 287 17 40 chr11 9157983 9158142 -141625411 + (CATATA)n Simple_repeat Simple_repeat 14 170 0 379 276 31 0 chr11 9158917 9159015 -141624538 + MIR SINE MIR 80 180 -82 579 199 60 12 chr11 9159046 9159212 -141624341 - MIR SINE MIR -5 257 84 1687 167 16 16 chr11 9159787 9159917 -141623636 + AluJo SINE Alu 1 130 -182 288 0 0 0 chr11 9159917 9159949 -141623604 + (CA)n Simple_repeat Simple_repeat 2 33 0 1687 167 16 16 chr11 9159949 9160130 -141623423 + AluJo SINE Alu 129 312 0 905 231 52 0 chr11 9160130 9160355 -141623198 - MIR SINE MIR -6 256 17 319 317 106 0 chr11 9161123 9161246 -141622307 - L2 LINE L2 -1 3271 3136 304 283 151 52 chr11 9161351 9161623 -141621930 - L2 LINE L2 -491 2823 2525 191 414 29 10 chr11 9161627 9161731 -141621822 - MIR SINE MIR 0 262 157 652 271 9 32 chr11 9161733 9161954 -141621599 - LTR33 LTR ERVL -2 519 304 1154 267 41 26 chr11 9163080 9163469 -141620084 - MLT1I LTR MaLR 0 409 15 2632 107 5 29 chr11 9163936 9164320 -141619233 - THE1C LTR MaLR 0 375 1 197 200 0 0 chr11 9164660 9164695 -141618858 + MIR SINE MIR 75 109 -153 557 278 116 6 chr11 9164842 9165015 -141618538 + MIR SINE MIR 70 261 -1 464 210 63 145 chr11 9165342 9165669 -141617884 + LTR16A1 LTR ERVL 169 457 0 438 368 69 26 chr11 9165724 9165955 -141617598 - MIR SINE MIR -14 248 8 22 35 0 0 chr11 9168495 9168524 -141615029 + AT_rich Low_complexity Low_complexity 1 29 0 387 0 0 0 chr11 9170189 9170232 -141613321 + (CA)n Simple_repeat Simple_repeat 1 43 0 423 207 162 0 chr11 9171024 9171135 -141612418 + MER3 DNA MER1_type 77 205 -4 829 290 68 16 chr11 9171323 9171571 -141611982 + MIR SINE MIR 2 262 0 231 36 0 0 chr11 9171575 9171603 -141611950 + (CACCAT)n Simple_repeat Simple_repeat 6 33 0 1592 242 301 11 chr11 9174369 9175116 -141608437 + L1MC4 LINE L1 6948 7911 -131 2499 184 98 45 chr11 9176171 9176764 -141606789 - MLT1E3 LTR MaLR 0 624 1 565 179 8 15 chr11 9178527 9178661 -141604892 + CT-rich Low_complexity Low_complexity 4 136 0 1107 220 43 28 chr11 9179012 9179339 -141604214 - L1ME3 LINE L1 0 6162 5831 521 222 28 49 chr11 9179339 9179483 -141604070 - Tigger6 DNA MER2_type -3 1594 1454 23 33 0 0 chr11 9179595 9179625 -141603928 + AT_rich Low_complexity Low_complexity 1 30 0 536 330 85 13 chr11 9180559 9180795 -141602758 + MIR SINE MIR 5 257 -5 460 310 111 10 chr11 9180845 9181321 -141602232 + L2 LINE L2 2380 3254 -18 634 333 98 46 chr11 9181330 9182199 -141601354 - L2 LINE L2 -374 2940 2027 2178 130 9 35 chr11 9183432 9183778 -141599775 + MER1B DNA MER1_type 1 337 0 216 257 17 149 chr11 9183809 9183984 -141599569 + L2 LINE L2 2726 2877 -437 195 69 0 0 chr11 9184090 9184119 -141599434 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 263 309 93 32 chr11 9184347 9184593 -141598960 - L2 LINE L2 -189 3083 2823 1061 261 76 80 chr11 9184764 9185353 -141598200 + MER45C DNA AcHobo 46 632 -321 606 257 24 23 chr11 9186003 9186178 -141597375 + MIR SINE MIR 41 214 -48 828 281 49 20 chr11 9186204 9186450 -141597103 - MIR SINE MIR -8 254 2 1807 157 30 10 chr11 9186508 9186813 -141596740 - AluJo SINE Alu -1 311 1 21 36 0 0 chr11 9186813 9186841 -141596712 + AT_rich Low_complexity Low_complexity 1 28 0 254 274 27 0 chr11 9187331 9187404 -141596149 - L3 LINE CR1 -88 1489 1415 388 250 107 0 chr11 9187731 9187843 -141595710 - MER63 DNA MER1_type -86 750 1 342 123 0 0 chr11 9187887 9187944 -141595609 + (TG)n Simple_repeat Simple_repeat 2 58 0 205 74 0 0 chr11 9188684 9188711 -141594842 + L2 LINE L2 3231 3257 -15 182 65 65 0 chr11 9191903 9191934 -141591619 + CT-rich Low_complexity Low_complexity 3 35 0 212 241 0 19 chr11 9192067 9192121 -141591432 + CT-rich Low_complexity Low_complexity 4 56 0 639 313 42 32 chr11 9192134 9192351 -141591202 + MIR SINE MIR 25 243 -19 901 264 17 13 chr11 9192647 9192878 -141590675 + MIR SINE MIR 31 262 0 230 297 0 0 chr11 9193753 9193827 -141589726 + MIR SINE MIR 68 141 -67 223 271 188 24 chr11 9195276 9195361 -141588192 - MIR SINE MIR -66 142 44 1145 172 66 66 chr11 9196999 9197318 -141586235 - MER33 DNA MER1_type 0 324 6 195 313 104 17 chr11 9197334 9197449 -141586104 - MIR SINE MIR -68 140 16 194 304 194 44 chr11 9197640 9197867 -141585686 - L2 LINE L2 -27 3245 2985 24 0 0 0 chr11 9199017 9199041 -141584512 + GC_rich Low_complexity Low_complexity 1 24 0 1144 306 50 21 chr11 9199073 9199554 -141583999 + L2 LINE L2 2817 3311 -2 238 321 37 55 chr11 9200062 9200171 -141583382 + MIR3 SINE MIR 90 196 -12 231 103 0 0 chr11 9200296 9200335 -141583218 + (ACTG)n Simple_repeat Simple_repeat 4 42 0 347 257 55 9 chr11 9201713 9201822 -141581731 + L2 LINE L2 3199 3312 -1 295 297 70 62 chr11 9201901 9202029 -141581524 - MIR SINE MIR -61 147 28 196 254 85 0 chr11 9202152 9202211 -141581342 - MIR SINE MIR -61 147 84 811 135 8 23 chr11 9202951 9203084 -141580469 - AluSq/x SINE Alu -182 131 1 230 271 99 44 chr11 9203101 9203269 -141580284 + MIR3 SINE MIR 54 230 -32 * 249 359 166 0 chr11 9203242 9203387 -141580166 - L3 LINE CR1 -27 1550 1382 1897 149 7 7 chr11 9204007 9204303 -141579250 - AluJb SINE Alu -16 296 1 219 339 150 0 chr11 9204772 9204899 -141578654 - MIR SINE MIR -98 164 19 407 266 139 17 chr11 9207023 9207196 -141576357 - MIR3 SINE MIR -3 205 12 196 396 0 11 chr11 9208448 9208539 -141575014 + MIR SINE MIR 46 135 -127 205 313 0 10 chr11 9208782 9208878 -141574675 + CT-rich Low_complexity Low_complexity 1 95 0 307 350 55 21 chr11 9210004 9210223 -141573330 + MIR SINE MIR 6 233 -29 1919 197 53 40 chr11 9210295 9210845 -141572708 - L1MD3 LINE L1 0 8042 7501 254 328 128 8 chr11 9210846 9210971 -141572582 + MIR SINE MIR 78 217 -45 1607 143 3 52 chr11 9211308 9211595 -141571958 - AluJb SINE Alu -14 298 26 210 368 0 0 chr11 9211595 9211671 -141571882 - MIR SINE MIR -185 77 2 370 194 74 74 chr11 9211830 9211938 -141571615 + L2 LINE L2 3201 3308 -5 389 308 258 0 chr11 9212929 9213111 -141570442 + MIR SINE MIR 7 235 -27 1904 209 45 54 chr11 9213143 9213508 -141570045 + L1ME3 LINE L1 5612 5972 -190 2497 60 0 0 chr11 9213508 9213810 -141569743 + AluY SINE Alu 5 306 -5 1904 209 45 54 chr11 9213810 9214000 -141569553 + L1ME3 LINE L1 5972 6162 0 706 307 46 8 chr11 9214046 9214284 -141569269 - MIR SINE MIR -1 261 15 194 139 0 28 chr11 9215017 9215053 -141568500 - L2 LINE L2 -21 3251 3217 2378 154 3 8 chr11 9215573 9215937 -141567616 - MLT1A1 LTR MaLR 0 365 4 547 294 213 41 chr11 9216194 9217022 -141566531 + L2 LINE L2 2311 3254 -59 360 354 23 8 chr11 9218664 9218794 -141564759 + L3 LINE CR1 941 1072 -505 488 376 44 0 chr11 9220113 9220294 -141563259 - MIR SINE MIR -4 258 70 542 314 42 11 chr11 9220396 9220587 -141562966 + MIR SINE MIR 16 212 -50 193 280 43 43 chr11 9220622 9220715 -141562838 - MIR SINE MIR -82 180 88 3321 151 23 11 chr11 9220852 9220878 -141562675 + L1MB7 LINE L1 5601 5625 -559 2747 122 39 0 chr11 9220878 9221288 -141562265 - MSTB LTR MaLR 0 426 1 3321 151 23 11 chr11 9221288 9221830 -141561723 + L1MB7 LINE L1 5625 6176 -8 318 252 36 54 chr11 9223162 9223273 -141560280 - MIR SINE MIR -138 124 16 279 391 8 16 chr11 9224486 9224614 -141558939 + L2 LINE L2 2632 2758 -556 275 27 0 0 chr11 9224615 9224652 -141558901 + L1PA16 LINE L1 5945 5981 -185 421 119 0 83 chr11 9224653 9224737 -141558816 + L1PA16 LINE L1 6057 6133 -33 307 349 72 46 chr11 9225022 9225217 -141558336 - L1 LINE L1 -1535 4611 4412 196 280 20 0 chr11 9225929 9225979 -141557574 + MIR SINE MIR 108 158 -104 470 259 0 9 chr11 9226317 9226433 -141557120 - MIR SINE MIR -70 138 24 466 251 17 11 chr11 9226780 9226959 -141556594 + (TG)n Simple_repeat Simple_repeat 1 180 0 697 166 0 11 chr11 9226970 9227151 -141556402 + (TG)n Simple_repeat Simple_repeat 2 180 0 335 286 30 27 chr11 9227242 9227396 -141556157 + MIR SINE MIR 44 191 -62 1626 233 147 45 chr11 9227515 9228051 -141555502 + MLT1E LTR MaLR 3 593 0 834 274 15 0 chr11 9229908 9230109 -141553444 + MIR SINE MIR 8 211 -51 1476 241 109 47 chr11 9230109 9230338 -141553215 + MLT1H LTR MaLR 3 216 -333 1745 167 21 0 chr11 9230338 9230619 -141552934 + AluJb SINE Alu 7 293 -19 1476 241 109 47 chr11 9230619 9230904 -141552649 + MLT1H LTR MaLR 216 549 0 2639 26 0 0 chr11 9230926 9231229 -141552324 - AluY SINE Alu -8 303 1 291 165 282 0 chr11 9231419 9231504 -141552049 - MIR SINE MIR -63 145 37 974 222 53 0 chr11 9232100 9232289 -141551264 + MER63A DNA MER1_type 1 199 -11 190 435 9 9 chr11 9232696 9232811 -141550742 + MIR3 SINE MIR 65 179 -29 201 355 32 21 chr11 9233049 9233142 -141550411 - MIR SINE MIR -58 204 111 182 325 72 24 chr11 9236402 9236485 -141547068 + L3b LINE CR1 1477 1563 -20 199 167 0 0 chr11 9237161 9237191 -141546362 + MIR SINE MIR 81 110 -152 24 53 0 0 chr11 9238175 9238213 -141545340 + GC_rich Low_complexity Low_complexity 1 38 0 29 47 0 0 chr11 9238273 9238316 -141545237 + GC_rich Low_complexity Low_complexity 1 43 0 186 133 0 0 chr11 9238697 9238727 -141544826 + (GGGAGA)n Simple_repeat Simple_repeat 4 33 0 569 142 25 67 chr11 9239450 9239570 -141543983 - L2 LINE L2 -6 3307 3193 2146 113 0 3 chr11 9239714 9240024 -141543529 - AluSg SINE Alu -1 309 1 505 294 39 10 chr11 9240188 9240392 -141543161 + MIR SINE MIR 20 229 -33 509 238 9 9 chr11 9242326 9242431 -141541122 + MER81 DNA DNA 6 110 -4 590 194 82 47 chr11 9242674 9242844 -141540709 - MER69A DNA AcHobo 0 177 2 23 0 0 0 chr11 9243624 9243647 -141539906 + GC_rich Low_complexity Low_complexity 1 23 0 297 100 0 0 chr11 9244111 9244161 -141539392 + (TG)n Simple_repeat Simple_repeat 2 51 0 553 286 60 12 chr11 9245383 9245551 -141538002 + MER91A DNA MER1_type 21 196 0 322 332 26 0 chr11 9245837 9246027 -141537526 + L1M4 LINE L1 2170 2364 -3782 374 345 22 0 chr11 9246826 9247058 -141536495 + L1M4 LINE L1 2139 2375 -3771 919 283 71 48 chr11 9247065 9247713 -141535840 + L1M4 LINE L1 2856 3547 -2599 3473 135 15 2 chr11 9247713 9248262 -141535291 + L1MB2 LINE L1 5613 6168 -3 919 283 71 48 chr11 9248262 9248849 -141534704 + L1M4 LINE L1 3547 4119 -2027 265 317 35 95 chr11 9249203 9249436 -141534117 + L1MEd LINE L1 245 452 -5667 2064 111 7 13 chr11 9249436 9249734 -141533819 + AluSp SINE Alu 1 296 -17 265 317 35 95 chr11 9249734 9249847 -141533706 + L1MEd LINE L1 452 570 -5549 1157 8 0 0 chr11 9249847 9249979 -141533574 + AluYb8 SINE Alu 179 310 -8 2366 115 42 0 chr11 9250137 9250494 -141533059 + L1PB3 LINE L1 5783 6154 0 529 289 161 12 chr11 9252393 9252735 -141530818 + L3 LINE CR1 1143 1535 -42 850 283 163 30 chr11 9253183 9253265 -141530288 + L2 LINE L2 2271 2341 -973 4389 171 55 39 chr11 9253265 9254204 -141529349 + LTR13 LTR ERVK 1 954 0 850 283 163 30 chr11 9254204 9254630 -141528923 + L2 LINE L2 2341 2847 -467 464 218 42 109 chr11 9254789 9254982 -141528571 + L2 LINE L2 3132 3311 -2 2418 44 3 0 chr11 9255004 9255297 -141528256 - AluY SINE Alu -17 294 1 768 234 43 89 chr11 9256554 9256811 -141526742 + MIR SINE MIR 9 253 -9 693 259 74 26 chr11 9258443 9258713 -141524840 - LTR33 LTR ERVL -238 283 1 22 0 0 0 chr11 9259274 9259296 -141524257 + AT_rich Low_complexity Low_complexity 1 22 0 3714 80 31 0 chr11 9260414 9260890 -141522663 - L1P LINE L1 -5649 497 7 1477 133 0 0 chr11 9261061 9261272 -141522281 + AluSq SINE Alu 79 289 -24 11849 83 10 1 chr11 9261575 9263204 -141520349 - L1P LINE L1 -1485 4661 3018 1081 68 25 0 chr11 9263197 9263359 -141520194 + L1P LINE L1 4675 4840 -1306 * 270 0 0 0 chr11 9263459 9263489 -141520064 + (TC)n Simple_repeat Simple_repeat 2 31 0 * 297 0 0 0 chr11 9263488 9263521 -141520032 + (TG)n Simple_repeat Simple_repeat 2 34 0 5424 110 15 23 chr11 9264248 9265148 -141518405 + L1MA4A LINE L1 5231 6122 -181 303 185 0 62 chr11 9265152 9265233 -141518320 + L1MA4A LINE L1 6188 6263 -40 7673 27 5 0 chr11 9265335 9266496 -141517057 + L1PA4 LINE L1 4980 6144 -11 1746 280 117 37 chr11 9266505 9267353 -141516200 + L1M4 LINE L1 2354 3133 -3013 1680 165 0 52 chr11 9267353 9267680 -141515873 + AluJo SINE Alu 1 310 -2 1746 280 117 37 chr11 9267680 9268358 -141515195 + L1M4 LINE L1 3133 4001 -2145 13473 41 1 3 chr11 9268473 9270123 -141513430 + L1P LINE L1 1422 3067 -3079 1360 209 38 48 chr11 9270223 9270301 -141513252 - L1M4 LINE L1 -1798 4348 4271 180 0 0 0 chr11 9270301 9270321 -141513232 + (TG)n Simple_repeat Simple_repeat 2 21 0 1360 209 38 48 chr11 9270321 9270581 -141512972 - L1M4 LINE L1 -1875 4271 4012 7540 71 22 2 chr11 9270581 9272395 -141511158 - L1PA7 LINE L1 -3 6151 4316 1360 209 38 48 chr11 9272395 9272428 -141511125 - L1M4 LINE L1 -2134 4012 3980 14994 27 5 0 chr11 9272574 9275041 -141508512 - L1PA4 LINE L1 -57 6098 3625 2163 102 7 3 chr11 9275152 9275457 -141508096 + AluSp SINE Alu 1 306 -7 7297 153 18 2 chr11 9275833 9278111 -141505442 - L1PB2 LINE L1 -1 6150 3837 374 171 199 74 chr11 9278281 9278394 -141505159 - MER112 DNA MER1_type -15 245 147 1709 169 3 10 chr11 9278394 9278701 -141504852 + AluJo SINE Alu 1 305 -7 374 171 199 74 chr11 9278701 9278763 -141504790 - MER112 DNA MER1_type -112 148 48 2149 123 0 0 chr11 9278774 9279058 -141504495 + AluSx SINE Alu 1 317 0 185 30 61 0 chr11 9279058 9279091 -141504462 + (CAA)n Simple_repeat Simple_repeat 2 180 0 778 269 60 0 chr11 9279493 9279694 -141503859 - MIR SINE MIR -9 253 41 216 283 0 0 chr11 9280078 9280131 -141503422 + (TATATG)n Simple_repeat Simple_repeat 6 58 0 1076 156 12 34 chr11 9280209 9280609 -141502944 + MLT1D LTR MaLR 1 505 0 456 268 196 22 chr11 9280680 9280904 -141502649 + L3 LINE CR1 1191 1453 -124 422 269 35 47 chr11 9280948 9281119 -141502434 - MIR SINE MIR -40 222 54 245 379 73 8 chr11 9281183 9281307 -141502246 - L2 LINE L2 0 3272 3141 1913 127 64 11 chr11 9281491 9281868 -141501685 - LTR1 LTR ERV1 -355 430 34 431 133 0 0 chr11 9281868 9281928 -141501625 - AluS SINE Alu -258 60 1 497 313 88 0 chr11 9281928 9282145 -141501408 - L1M4 LINE L1 -2873 3273 3038 511 320 47 33 chr11 9282502 9283190 -141500363 - HAL1 LINE L1 -838 1669 973 1430 191 85 34 chr11 9283947 9284512 -141499041 + Charlie2 DNA MER1_type 2044 2637 -225 269 286 20 31 chr11 9284643 9284741 -141498812 + L3 LINE CR1 1480 1576 -1 1825 205 63 14 chr11 9284922 9285226 -141498327 + MER63B DNA MER1_type 1 332 -730 1859 140 16 45 chr11 9285226 9285540 -141498013 - AluJo SINE Alu -7 305 1 1825 205 63 14 chr11 9285540 9285649 -141497904 + MER63B DNA MER1_type 332 434 -2 6020 96 27 8 chr11 9286420 9287828 -141495725 - L1PA15 LINE L1 -8 6157 4722 3678 154 70 35 chr11 9287883 9289445 -141494108 - L1MB7 LINE L1 -19 6165 4556 297 161 0 16 chr11 9292908 9292970 -141490583 - MER116 DNA Mariner -19 61 1 2620 90 28 3 chr11 9292975 9293330 -141490223 + THE1B LTR MaLR 1 364 0 942 244 76 21 chr11 9293348 9293676 -141489877 - L1MC4a LINE L1 -1868 5940 5595 213 39 0 0 chr11 9293829 9293855 -141489698 + (TCTCCC)n Simple_repeat Simple_repeat 4 29 0 6153 77 17 7 chr11 9293875 9295392 -141488161 + SVA Other Other 32 1369 -17 22 0 0 0 chr11 9295395 9295417 -141488136 + AT_rich Low_complexity Low_complexity 1 22 0 851 185 11 0 chr11 9295417 9295651 -141487902 + L1M2 LINE L1 5211 5446 -743 965 127 5 89 chr11 9295657 9295870 -141487683 + MER6 DNA MER2_type 671 865 0 787 237 28 0 chr11 9295871 9295924 -141487629 + L1MA10 LINE L1 6111 6161 -173 186 43 0 0 chr11 9295924 9295947 -141487606 + (TAA)n Simple_repeat Simple_repeat 2 24 0 787 237 28 0 chr11 9295947 9296104 -141487449 + L1MA10 LINE L1 6161 6327 -7 1651 263 56 24 chr11 9296115 9297193 -141486360 + L1M3 LINE L1 4416 5557 -614 1994 117 21 3 chr11 9297193 9297483 -141486070 + AluSc SINE Alu 1 295 -14 1651 263 56 24 chr11 9297483 9297746 -141485807 + L1M3 LINE L1 5557 5810 -361 248 195 67 65 chr11 9297844 9297987 -141485566 + L1ME3A LINE L1 5811 5955 -211 1749 138 35 48 chr11 9298040 9298351 -141485202 - AluSq SINE Alu -6 307 1 446 225 43 7 chr11 9298407 9298545 -141485008 + L1ME3A LINE L1 6022 6164 -6 22 35 0 0 chr11 9298980 9299009 -141484544 + AT_rich Low_complexity Low_complexity 1 29 0 1366 125 76 163 chr11 9299167 9299640 -141483913 + LTR23 LTR ERV1 1 432 -5 664 228 24 134 chr11 9299955 9300209 -141483344 - MIR SINE MIR -31 231 6 1622 212 102 36 chr11 9300562 9301034 -141482519 + MLT1D LTR MaLR 3 505 0 575 296 73 45 chr11 9301588 9301757 -141481796 + L1M4 LINE L1 2850 3013 -3133 2114 132 0 3 chr11 9301757 9302067 -141481486 - AluSx SINE Alu -3 309 1 575 296 73 45 chr11 9302067 9302387 -141481166 + L1M4 LINE L1 3013 3353 -2793 1220 236 143 31 chr11 9302414 9302930 -141480623 - MLT1G LTR MaLR -16 574 1 357 319 69 5 chr11 9302932 9303120 -141480433 + L1M4 LINE L1 3370 3569 -2577 494 341 39 0 chr11 9303141 9303323 -141480230 - MER5A DNA MER1_type 0 189 1 1245 210 0 0 chr11 9303331 9303555 -141479998 + MER58A DNA MER1_type 1 224 0 425 291 24 0 chr11 9303733 9303860 -141479693 + MER117 DNA MER1_type 68 197 0 2418 71 0 0 chr11 9305070 9305366 -141478187 + AluSq SINE Alu 2 297 -16 460 247 91 0 chr11 9305493 9305647 -141477906 - L1 LINE L1 -1037 5109 4942 37465 70 7 25 chr11 9305656 9311752 -141471801 - L1PA6 LINE L1 -168 5986 1 3181 175 434 9 chr11 9311751 9312973 -141470580 - L1 LINE L1 -1189 4957 3217 * 603 277 148 57 chr11 9312978 9313473 -141470080 - L1MEd LINE L1 -5028 1091 552 3756 92 24 16 chr11 9313875 9314450 -141469103 + L1MA3 LINE L1 5726 6305 0 5146 225 67 42 chr11 9317117 9317699 -141465854 - L1ME2 LINE L1 0 6164 5598 2089 113 14 0 chr11 9317699 9317990 -141465563 + AluY SINE Alu 1 295 -16 5146 225 67 42 chr11 9317990 9318697 -141464856 - L1ME2 LINE L1 -566 5598 4910 2624 39 0 3 chr11 9318697 9319006 -141464547 + AluY SINE Alu 1 308 -3 5146 225 67 42 chr11 9319006 9320451 -141463102 - L1ME2 LINE L1 -1254 4910 3365 998 255 91 0 chr11 9320460 9320844 -141462709 + L1MDa LINE L1 1395 1813 -4727 475 250 58 21 chr11 9320865 9321053 -141462500 + L1MDa LINE L1 2095 2289 -4432 2235 169 37 13 chr11 9321482 9321989 -141461564 - MER68 LTR ERV1 0 562 1 335 320 76 20 chr11 9322163 9322360 -141461193 - MLT1H LTR MaLR -292 257 50 685 264 181 0 chr11 9322620 9322836 -141460717 - MIR SINE MIR -2 260 6 2289 125 0 0 chr11 9323297 9323609 -141459944 - AluSx SINE Alu 0 312 1 183 80 0 0 chr11 9324290 9324315 -141459238 + (TTTTTG)n Simple_repeat Simple_repeat 2 26 0 610 311 18 58 chr11 9324400 9324677 -141458876 - L3 LINE CR1 -5 1572 1307 244 187 0 44 chr11 9324945 9325036 -141458517 + (TATATG)n Simple_repeat Simple_repeat 5 91 0 1055 176 20 20 chr11 9325925 9326124 -141457429 + MER58A DNA MER1_type 26 224 0 1695 167 62 0 chr11 9328377 9328682 -141454871 + Tigger6a DNA MER2_type 2 325 -758 753 164 14 0 chr11 9328677 9328817 -141454736 + Tigger6a DNA MER2_type 366 507 -576 * 1611 187 49 6 chr11 9328819 9329167 -141454386 + Tigger6a DNA MER2_type 720 1082 -1 206 234 31 47 chr11 9330020 9330084 -141453469 + L2 LINE L2 3251 3313 0 675 269 137 15 chr11 9330261 9330596 -141452957 + L1MC/D LINE L1 5374 5749 -2059 5740 139 28 16 chr11 9330650 9331994 -141451559 - L1PA14 LINE L1 0 6161 4803 2508 172 0 0 chr11 9332195 9332630 -141450923 - L1P LINE L1 -1215 4931 4497 855 133 47 0 chr11 9332871 9332999 -141450554 - AluJo SINE Alu -178 134 1 1569 144 72 22 chr11 9333608 9333885 -141449668 + AluJo SINE Alu 3 293 -19 1383 292 108 15 chr11 9333969 9334862 -141448691 - L1M4 LINE L1 -924 5222 4247 1086 94 29 12 chr11 9336255 9336425 -141447128 + MER30 DNA MER1_type 1 173 -57 293 319 142 35 chr11 9336515 9336656 -141446897 + L2 LINE L2 3117 3272 0 2389 87 0 0 chr11 9336724 9337022 -141446531 - AluSg SINE Alu -12 298 1 248 294 59 73 chr11 9337855 9337991 -141445562 + L2 LINE L2 3139 3272 0 238 309 0 15 chr11 9338064 9338132 -141445421 - MER5A DNA MER1_type 0 189 123 1596 298 63 21 chr11 9339222 9339796 -141443757 + L2 LINE L2 2111 2708 -606 2011 92 18 95 chr11 9339800 9340127 -141443426 + AluSc SINE Alu 1 302 -7 215 281 62 0 chr11 9340169 9340233 -141443320 + L2 LINE L2 3242 3309 -4 907 260 115 11 chr11 9340398 9340667 -141442886 - MLT1J LTR MaLR -59 452 156 270 304 87 9 chr11 9340801 9340916 -141442637 - L2 LINE L2 -27 3286 3163 27 0 0 0 chr11 9342020 9342047 -141441506 + AT_rich Low_complexity Low_complexity 1 27 0 2175 123 0 0 chr11 9342554 9342855 -141440698 - AluSx SINE Alu -11 301 1 250 325 133 21 chr11 9345038 9345226 -141438327 - L2 LINE L2 -1 3312 3104 204 40 0 0 chr11 9345629 9345654 -141437899 + (CATGC)n Simple_repeat Simple_repeat 3 27 0 245 116 58 0 chr11 9345675 9345744 -141437809 + (TA)n Simple_repeat Simple_repeat 1 73 0 336 360 75 18 chr11 9345767 9346045 -141437508 - L2 LINE L2 -570 2744 2451 23 33 0 0 chr11 9346440 9346470 -141437083 + AT_rich Low_complexity Low_complexity 1 30 0 1677 184 3 20 chr11 9347217 9347516 -141436037 - AluJo SINE Alu -18 294 1 335 250 30 50 chr11 9347711 9347811 -141435742 - MIR SINE MIR -86 176 79 357 93 0 0 chr11 9347874 9347928 -141435625 + (CA)n Simple_repeat Simple_repeat 2 55 0 1438 151 94 51 chr11 9348631 9348982 -141434571 + L1ME2 LINE L1 5799 6164 0 538 289 98 100 chr11 9349113 9349583 -141433970 + L1ME1 LINE L1 2636 3106 -3040 1480 187 20 47 chr11 9349583 9349883 -141433670 + AluJo SINE Alu 8 299 -13 538 289 98 100 chr11 9349883 9349993 -141433560 + L1ME1 LINE L1 3106 3215 -2931 299 268 37 0 chr11 9350093 9350175 -141433378 - MIR SINE MIR -29 233 149 579 269 0 7 chr11 9350252 9350393 -141433160 + L2 LINE L2 3172 3311 -2 227 335 16 11 chr11 9350458 9350640 -141432913 + L1ME1 LINE L1 3300 3482 -2664 432 127 0 14 chr11 9350730 9350801 -141432752 - L1P LINE L1 -1475 4671 4602 6060 83 16 10 chr11 9350906 9351565 -141431988 + L1PA7 LINE L1 4711 5364 -790 15285 30 7 0 chr11 9351565 9354158 -141429395 + L1PA4 LINE L1 3550 6154 -1 6060 55 1 7 chr11 9354163 9354933 -141428620 + L1PA7 LINE L1 5387 6152 -2 6060 83 16 10 chr11 9354933 9354960 -141428593 + L1PA7 LINE L1 5367 6152 -2 427 255 204 4 chr11 9355024 9355255 -141428298 + L1ME1 LINE L1 3638 3914 -2232 * 3123 189 22 84 chr11 9355243 9356178 -141427375 + L1ME1 LINE L1 5318 6176 -2 2070 128 7 0 chr11 9356289 9356579 -141426974 + AluSx SINE Alu 1 292 -20 1529 164 13 34 chr11 9356866 9357164 -141426389 + AluJb SINE Alu 1 292 -20 22 0 0 0 chr11 9357747 9357769 -141425784 + AT_rich Low_complexity Low_complexity 1 22 0 448 262 93 0 chr11 9358321 9358428 -141425125 - L2 LINE L2 0 3313 3197 2210 90 0 10 chr11 9359892 9360182 -141423371 + AluY SINE Alu 1 287 -24 317 200 167 22 chr11 9360334 9360424 -141423129 + MIR SINE MIR 49 151 -57 1483 127 139 11 chr11 9360533 9360800 -141422753 + L1MC1 LINE L1 6025 6325 -8 345 343 98 59 chr11 9361380 9361888 -141421665 - L2 LINE L2 0 3272 2732 998 238 116 47 chr11 9361969 9362288 -141421265 - MER58B DNA MER1_type 0 341 1 207 322 20 72 chr11 9362461 9362613 -141420940 - L3 LINE CR1 -591 986 843 4218 246 85 10 chr11 9363249 9364569 -141418984 + L1MEc LINE L1 35 1453 -4943 785 270 0 38 chr11 9364926 9365137 -141418416 - MIR SINE MIR -54 208 6 459 224 0 0 chr11 9366316 9366423 -141417130 + (TA)n Simple_repeat Simple_repeat 2 108 0 363 163 0 0 chr11 9366493 9366573 -141416980 + GA-rich Low_complexity Low_complexity 1 80 0 2159 116 0 54 chr11 9367099 9367452 -141416101 - MER1B DNA MER1_type 0 337 4 2209 137 19 25 chr11 9369829 9370195 -141413358 - THE1B LTR MaLR 0 364 1 11707 88 14 6 chr11 9370195 9371703 -141411850 - THE1B-int LTR MaLR 0 1580 58 2179 127 0 0 chr11 9371703 9371995 -141411558 + AluSc SINE Alu 1 292 -17 11707 88 14 6 chr11 9371995 9372054 -141411499 - THE1B-int LTR MaLR -1522 58 1 2245 121 28 25 chr11 9372054 9372417 -141411136 - THE1B LTR MaLR 0 364 1 13779 130 61 3 chr11 9372838 9375121 -141408432 - Tigger1 DNA MER2_type 0 2418 2 325 300 8 8 chr11 9375557 9375687 -141407866 + HAL1b LINE L1 1209 1338 -10 24 0 0 0 chr11 9375949 9375973 -141407580 + AT_rich Low_complexity Low_complexity 1 24 0 1668 186 3 14 chr11 9375976 9376267 -141407286 - AluJo SINE Alu -24 288 1 1474 166 70 0 chr11 9376385 9376644 -141406909 - Tigger1 DNA MER2_type -1912 506 230 25 75 0 0 chr11 9376704 9376757 -141406796 + AT_rich Low_complexity Low_complexity 1 53 0 24 0 0 0 chr11 9377323 9377347 -141406206 + AT_rich Low_complexity Low_complexity 1 24 0 1094 210 39 11 chr11 9377929 9378215 -141405338 + AluSq SINE Alu 1 294 -9 322 345 16 41 chr11 9378555 9378749 -141404804 + L1MC4a LINE L1 7227 7415 -393 1205 182 11 42 chr11 9378753 9378883 -141404670 - L1MDb LINE L1 -4793 1534 1401 1602 155 44 73 chr11 9378883 9379088 -141404465 - AluJo SINE Alu -4 308 114 2347 98 3 0 chr11 9379088 9379394 -141404159 - AluSx SINE Alu -4 308 2 1602 155 44 73 chr11 9379394 9379505 -141404048 - AluJo SINE Alu -198 114 1 1205 182 11 42 chr11 9379505 9379713 -141403840 - L1MDb LINE L1 -4926 1401 929 742 104 9 14 chr11 9379741 9379957 -141403596 + AluSg SINE Alu 2 310 0 1608 175 14 7 chr11 9380021 9380313 -141403240 + AluJb SINE Alu 1 294 -18 1099 220 46 9 chr11 9380350 9380568 -141402985 - MIR SINE MIR -31 231 6 199 161 0 0 chr11 9380834 9380865 -141402688 + L2 LINE L2 3241 3271 -1 2763 210 28 58 chr11 9382051 9382314 -141401239 + L1MA9 LINE L1 5521 5790 -522 1443 208 26 29 chr11 9382314 9382626 -141400927 + AluJo SINE Alu 1 311 -1 2763 210 28 58 chr11 9382626 9383082 -141400471 + L1MA9 LINE L1 5790 6218 -94 261 0 0 0 chr11 9383082 9383111 -141400442 + (TC)n Simple_repeat Simple_repeat 2 30 0 2763 210 28 58 chr11 9383111 9383166 -141400387 + L1MA9 LINE L1 6218 6273 -39 22 35 0 0 chr11 9383263 9383292 -141400261 + AT_rich Low_complexity Low_complexity 1 29 0 1056 180 43 5 chr11 9384529 9384740 -141398813 + MER20 DNA MER1_type 1 219 0 1810 129 43 7 chr11 9384844 9385123 -141398430 - AluJb SINE Alu -21 291 3 3103 91 24 4 chr11 9385549 9386011 -141397542 + L1MA1 LINE L1 5832 6302 0 1874 46 0 13 chr11 9386124 9386362 -141397191 - L1PA7 LINE L1 0 6154 5920 334 136 25 0 chr11 9386415 9386496 -141397057 + (TA)n Simple_repeat Simple_repeat 2 84 0 268 341 23 8 chr11 9387701 9387830 -141395723 - L2 LINE L2 -4 3309 3179 421 164 2 0 chr11 9387853 9387936 -141395617 + L1 LINE L1 4657 4740 -1406 2884 131 49 10 chr11 9387936 9388426 -141395127 - Tigger3(Golem) DNA MER2_type 0 3029 2521 6134 166 48 29 chr11 9388426 9389320 -141394233 - L1MA4 LINE L1 -11 6289 5413 2320 100 3 0 chr11 9389320 9389631 -141393922 - AluSq SINE Alu -1 312 1 6134 166 48 29 chr11 9389631 9389919 -141393634 - L1MA4 LINE L1 -887 5413 5132 3155 32 0 0 chr11 9389919 9390292 -141393261 + L1PA5 LINE L1 5782 6154 0 6134 166 48 29 chr11 9390292 9392059 -141391494 - L1MA4 LINE L1 -1168 5132 3177 349 138 11 23 chr11 9392377 9392464 -141391089 - L1MA4 LINE L1 -2952 3194 3109 709 122 0 0 chr11 9392464 9392562 -141390991 - AluSg SINE Alu -212 98 1 3394 89 16 10 chr11 9392562 9393056 -141390497 - THE1B-int LTR MaLR -1083 497 1 820 137 75 27 chr11 9393067 9393213 -141390340 - THE1B LTR MaLR -15 349 197 2045 156 0 0 chr11 9393252 9393547 -141390006 - AluSx SINE Alu -17 295 1 743 289 0 5 chr11 9393547 9393758 -141389795 - L1M3b LINE L1 -4976 1305 1096 852 323 46 32 chr11 9394023 9394524 -141389029 - L1M3b LINE L1 -5769 512 5 1708 82 10 33 chr11 9394524 9394827 -141388726 - Tigger3(Golem) DNA MER2_type -486 2543 2248 2013 132 0 7 chr11 9394931 9395220 -141388333 + AluSp SINE Alu 10 296 -17 520 196 142 88 chr11 9396248 9396488 -141387065 - MER112 DNA MER1_type 0 260 8 334 239 36 56 chr11 9397111 9397287 -141386266 + MLT1L LTR MaLR 7 138 -308 736 272 111 0 chr11 9397447 9397749 -141385804 + L2 LINE L2 2793 3138 -175 366 23 0 0 chr11 9398171 9398214 -141385339 + (CA)n Simple_repeat Simple_repeat 2 44 0 2170 70 10 73 chr11 9400164 9400478 -141383075 + AluSc SINE Alu 1 294 -15 2199 128 0 0 chr11 9400592 9400897 -141382656 + AluSx SINE Alu 1 305 -7 182 241 19 74 chr11 9400925 9400979 -141382574 + L2 LINE L2 3215 3265 -7 425 242 245 49 chr11 9401042 9401368 -141382185 + L3 LINE CR1 1181 1570 -7 22 0 0 0 chr11 9402342 9402364 -141381189 + AT_rich Low_complexity Low_complexity 1 22 0 222 270 16 16 chr11 9402387 9402450 -141381103 + L2 LINE L2 3150 3212 -60 303 277 8 108 chr11 9403691 9403736 -141379817 + MIR SINE MIR 119 167 -95 2351 68 0 7 chr11 9403736 9404062 -141379491 - AluY SINE Alu 0 311 1 303 277 8 108 chr11 9404062 9404146 -141379407 + MIR SINE MIR 167 235 -27 385 331 16 8 chr11 9404178 9404302 -141379251 - L2 LINE L2 -221 3051 2927 1031 321 67 29 chr11 9406958 9407683 -141375870 + L2 LINE L2 2464 3203 -69 763 326 112 58 chr11 9407692 9408173 -141375380 - L2 LINE L2 -584 2730 2192 1926 147 13 0 chr11 9408173 9408472 -141375081 + AluJb SINE Alu 1 303 -9 763 326 112 58 chr11 9408472 9408748 -141374805 - L2 LINE L2 -1122 2192 1932 5825 211 26 44 chr11 9408780 9410006 -141373547 + L1M4 LINE L1 8 1254 -5288 1781 187 10 3 chr11 9410006 9410316 -141373237 + AluJo SINE Alu 1 312 0 5825 211 26 44 chr11 9410316 9410397 -141373156 + L1M4 LINE L1 1254 1335 -5207 1660 201 55 26 chr11 9410397 9410780 -141372773 - MSTD LTR MaLR 0 396 3 5825 211 26 44 chr11 9410780 9410962 -141372591 + L1M4 LINE L1 1335 1472 -5070 38449 83 4 7 chr11 9410980 9417133 -141366420 + L1PA6 LINE L1 11 6147 -7 225 214 0 0 chr11 9417142 9417184 -141366369 + A-rich Low_complexity Low_complexity 1 42 0 23 0 0 0 chr11 9417568 9417591 -141365962 + AT_rich Low_complexity Low_complexity 1 23 0 2516 61 0 0 chr11 9417608 9417903 -141365650 - AluY SINE Alu -16 295 1 1576 189 32 74 chr11 9418113 9418496 -141365057 + L1M4 LINE L1 1464 1825 -4821 2047 129 30 3 chr11 9418496 9418791 -141364762 - AluJb SINE Alu -9 303 1 1576 189 32 74 chr11 9418791 9418878 -141364675 + L1M4 LINE L1 1825 1914 -4732 888 219 25 21 chr11 9418887 9419125 -141364428 + L1M4 LINE L1 4137 4375 -2269 506 143 0 12 chr11 9619134 9619218 -141164335 - AluJ/FLAM SINE Alu -228 84 2 2185 93 0 4 chr11 9619282 9619562 -141163991 + AluSx SINE Alu 20 298 -14 21 36 0 0 chr11 9621296 9621324 -141162229 + AT_rich Low_complexity Low_complexity 1 28 0 1115 126 0 13 chr11 9621395 9621554 -141161999 + AluJo SINE Alu 125 281 -31 33 0 8 0 chr11 9621554 9621632 -141161921 + AT_rich Low_complexity Low_complexity 1 33 0 26 30 0 0 chr11 9621761 9621794 -141161759 + AT_rich Low_complexity Low_complexity 1 33 0 1885 149 13 3 chr11 9622327 9622628 -141160925 + AluJb SINE Alu 1 304 -8 333 282 110 23 chr11 9623647 9623882 -141159671 - L1MC/D LINE L1 -456 5665 5504 280 344 0 0 chr11 9624397 9624490 -141159063 + MER5B DNA MER1_type 24 116 -62 1784 136 63 14 chr11 9624507 9624793 -141158760 - AluSx SINE Alu -12 300 1 1739 165 7 34 chr11 9625142 9625439 -141158114 + AluJo SINE Alu 1 289 -23 2264 107 0 3 chr11 9625442 9625740 -141157813 + AluSx SINE Alu 1 297 -15 261 0 0 0 chr11 9625741 9625770 -141157783 + (TA)n Simple_repeat Simple_repeat 1 29 0 2286 95 0 0 chr11 9626069 9626380 -141157173 + AluSx SINE Alu 1 311 0 1269 113 0 11 chr11 9626384 9626570 -141156983 + AluSg/x SINE Alu 129 312 0 2258 74 14 7 chr11 9627452 9627737 -141155816 + AluSq SINE Alu 1 287 -26 240 35 0 0 chr11 9627740 9627769 -141155784 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 2077 152 0 0 chr11 9627859 9628162 -141155391 - AluSx SINE Alu -9 303 1 1999 132 16 13 chr11 9628539 9628850 -141154703 + AluSq SINE Alu 1 312 -1 318 50 0 0 chr11 9628985 9629025 -141154528 + (TG)n Simple_repeat Simple_repeat 1 40 0 299 328 51 69 chr11 9630075 9630407 -141153146 + L2 LINE L2 2925 3250 -22 1768 150 27 14 chr11 9630584 9630877 -141152676 + AluJb SINE Alu 11 307 -5 1985 149 0 0 chr11 9631062 9631366 -141152187 + AluJo SINE Alu 1 304 0 2269 107 0 0 chr11 9631432 9631721 -141151832 - AluSg SINE Alu -21 289 1 3060 141 29 72 chr11 9632129 9632178 -141151375 + MER41D LTR ERV1 1 51 -506 2127 97 19 55 chr11 9632178 9632488 -141151065 - AluSx SINE Alu -13 299 1 3060 141 29 72 chr11 9632488 9632666 -141150887 + MER41D LTR ERV1 51 235 -322 1993 138 13 7 chr11 9632666 9632971 -141150582 + AluJo SINE Alu 1 307 -5 3060 141 29 72 chr11 9632971 9633198 -141150355 + MER41D LTR ERV1 235 428 -129 2222 112 3 3 chr11 9633198 9633494 -141150059 - AluSx SINE Alu -16 296 1 3060 141 29 72 chr11 9633494 9633619 -141149934 + MER41D LTR ERV1 428 557 0 412 224 213 11 chr11 9633670 9633844 -141149709 - MLT1K LTR MaLR 0 588 380 189 0 0 0 chr11 9634091 9634112 -141149441 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 1328 154 33 9 chr11 9634126 9634340 -141149213 - AluJb SINE Alu -30 282 64 2291 89 3 3 chr11 9634340 9634632 -141148921 - AluSp SINE Alu -21 292 1 1914 124 4 0 chr11 9634871 9635130 -141148423 - AluSq SINE Alu -53 260 1 237 277 128 69 chr11 9635395 9635583 -141147970 + MIR SINE MIR 37 235 -27 1823 163 3 3 chr11 9635602 9635908 -141147645 + AluJb SINE Alu 1 306 0 214 304 132 25 chr11 9635930 9636256 -141147297 + L2 LINE L2 1728 2088 -1226 3356 142 2 31 chr11 9636277 9636818 -141146735 + MER1A DNA MER1_type 1 525 -2 218 341 57 0 chr11 9636885 9636973 -141146580 + MIR SINE MIR 48 140 -122 2234 116 0 6 chr11 9637034 9637345 -141146208 + AluSg SINE Alu 1 309 -1 2436 84 3 0 chr11 9638324 9638634 -141144919 - AluSp SINE Alu 0 313 3 2334 106 0 0 chr11 9638635 9638936 -141144617 - AluSg1 SINE Alu -8 301 1 384 77 0 0 chr11 9640063 9640115 -141143438 + (TG)n Simple_repeat Simple_repeat 1 52 0 2180 98 10 3 chr11 9640236 9640532 -141143021 - AluSx SINE Alu -13 299 2 2271 111 3 0 chr11 9640535 9640832 -141142721 - AluSg SINE Alu -12 298 1 2275 108 3 3 chr11 9641002 9641307 -141142246 + AluSg SINE Alu 2 306 -4 350 262 62 0 chr11 9641448 9641593 -141141960 + L1MC5 LINE L1 7311 7464 -497 272 237 113 41 chr11 9641626 9641723 -141141830 + L1MC4 LINE L1 7634 7737 -305 874 211 18 0 chr11 9641819 9641990 -141141563 + AluSg/x SINE Alu 113 286 -24 1588 190 6 25 chr11 9642624 9642950 -141140603 - 7SLRNA srpRNA srpRNA 0 320 1 1008 238 114 65 chr11 9643003 9643100 -141140453 - L1MC4a LINE L1 -1944 5864 5773 2149 105 23 10 chr11 9643100 9643405 -141140148 + AluSg SINE Alu 1 309 -1 1008 238 114 65 chr11 9643405 9643596 -141139957 - L1MC4a LINE L1 -2035 5773 5593 306 0 0 0 chr11 9643596 9643630 -141139923 + (CA)n Simple_repeat Simple_repeat 2 35 0 1008 238 114 65 chr11 9643630 9643786 -141139767 - L1MC4a LINE L1 -2215 5593 5397 1989 86 4 0 chr11 9644694 9644986 -141138567 + AluSg SINE Alu 37 329 0 562 192 0 0 chr11 9645736 9645835 -141137718 - U13 snRNA snRNA -2 102 4 191 261 11 57 chr11 9647562 9647650 -141135903 - L3 LINE CR1 -852 725 642 36 53 0 0 chr11 9649292 9649349 -141134204 + GC_rich Low_complexity Low_complexity 1 57 0 21 0 0 0 chr11 9649449 9649470 -141134083 + GC_rich Low_complexity Low_complexity 1 21 0 35 78 0 0 chr11 9649668 9649745 -141133808 + GC_rich Low_complexity Low_complexity 1 77 0 237 65 0 0 chr11 9649800 9649831 -141133722 + (TCC)n Simple_repeat Simple_repeat 2 32 0 24 32 0 0 chr11 9649876 9649907 -141133646 + GC_rich Low_complexity Low_complexity 1 31 0 33 0 0 0 chr11 9650399 9650432 -141133121 + GC_rich Low_complexity Low_complexity 1 33 0 2266 98 3 22 chr11 9651155 9651471 -141132082 - AluSx SINE Alu -2 310 1 1933 92 32 51 chr11 9651526 9651840 -141131713 - AluSx SINE Alu -4 308 1 1737 139 7 36 chr11 9652451 9652752 -141130801 - AluJb SINE Alu -10 302 11 1875 167 3 10 chr11 9653293 9653592 -141129961 + AluJb SINE Alu 4 300 -12 2035 153 3 0 chr11 9653993 9654294 -141129259 - AluJb SINE Alu -10 302 1 304 293 151 46 chr11 9654321 9654560 -141128993 + L2 LINE L2 3009 3272 0 2579 53 0 0 chr11 9655710 9656013 -141127540 - AluY SINE Alu -8 303 1 1885 147 17 3 chr11 9656089 9656382 -141127171 + AluJb SINE Alu 1 297 -15 21 0 0 0 chr11 9656618 9656639 -141126914 + AT_rich Low_complexity Low_complexity 1 21 0 309 0 0 0 chr11 9657269 9657305 -141126248 - MER11C LTR ERVK -1035 36 1 378 254 152 0 chr11 9658046 9658184 -141125369 - MIR SINE MIR -10 252 94 35 0 0 0 chr11 9658234 9658269 -141125284 + AT_rich Low_complexity Low_complexity 1 35 0 1748 146 46 30 chr11 9658297 9658599 -141124954 - AluJo SINE Alu -5 307 1 414 271 33 33 chr11 9658916 9659067 -141124486 - L2 LINE L2 -193 3120 2970 2077 148 0 0 chr11 9659221 9659519 -141124034 + AluSx SINE Alu 1 298 -14 2069 120 7 13 chr11 9659638 9659937 -141123616 + AluSx SINE Alu 1 297 -15 9501 125 38 66 chr11 9659955 9661070 -141122483 + L1M1 LINE L1 22 1167 -6398 1924 168 13 0 chr11 9661070 9661373 -141122180 + AluSx SINE Alu 1 307 -5 9501 125 38 66 chr11 9661373 9662673 -141120880 + L1M1 LINE L1 1167 3044 -4521 1305 173 35 35 chr11 9662673 9662933 -141120620 + AluJo SINE Alu 45 304 -8 9621 146 23 39 chr11 9662933 9663079 -141120474 + L1M1 LINE L1 3038 3185 -4380 2190 113 0 0 chr11 9663079 9663403 -141120150 + AluSg SINE Alu 1 324 0 9621 146 23 39 chr11 9663403 9664009 -141119544 + L1M1 LINE L1 3185 3800 -3765 2430 93 0 0 chr11 9664009 9664309 -141119244 + AluSx SINE Alu 1 300 -12 9621 146 23 39 chr11 9664309 9664972 -141118581 + L1M1 LINE L1 3800 4473 -3092 1782 164 4 11 chr11 9664972 9665282 -141118271 + AluSx SINE Alu 3 310 0 9621 146 23 39 chr11 9665282 9665455 -141118098 + L1M1 LINE L1 4473 4647 -2918 2321 70 40 7 chr11 9665455 9665756 -141117797 + AluY SINE Alu 1 311 0 9621 146 23 39 chr11 9665756 9666314 -141117239 + L1M1 LINE L1 4647 5213 -2352 9412 96 8 21 chr11 9666314 9667617 -141115936 - HSMAR1 DNA Mariner 0 1287 3 9621 146 23 39 chr11 9667617 9667873 -141115680 + L1M1 LINE L1 5213 5472 -2093 2287 108 0 7 chr11 9667873 9668178 -141115375 + AluSq SINE Alu 1 303 -10 9621 146 23 39 chr11 9668178 9668512 -141115041 + L1M1 LINE L1 5472 5742 -1823 2260 119 0 0 chr11 9668596 9668890 -141114663 + AluSg SINE Alu 1 294 -16 1183 110 0 0 chr11 9668890 9669054 -141114499 + L1MA2 LINE L1 6141 6304 0 21 36 0 0 chr11 9669054 9669082 -141114471 + AT_rich Low_complexity Low_complexity 1 28 0 2296 109 3 0 chr11 9669664 9669968 -141113585 - AluSx SINE Alu -7 305 1 2432 46 0 3 chr11 9670213 9670529 -141113024 - AluY SINE Alu 0 315 1 359 210 76 59 chr11 9670614 9670733 -141112820 - L1M4 LINE L1 -1964 4182 4062 2205 87 17 3 chr11 9670754 9671043 -141112510 + AluSx SINE Alu 1 293 -19 4207 139 70 3 chr11 9671044 9671718 -141111835 - Tigger1 DNA MER2_type -1655 763 45 2046 155 0 3 chr11 9671718 9672027 -141111526 + AluSx SINE Alu 1 308 -4 327 154 0 0 chr11 9672066 9672118 -141111435 + Tigger7 DNA MER2_type 5 56 -283 296 164 36 0 chr11 9672139 9672194 -141111359 - Tigger1 DNA MER2_type -2361 57 1 32 44 0 29 chr11 9672215 9672266 -141111287 + AT_rich Low_complexity Low_complexity 1 51 -15 2237 104 3 0 chr11 9672266 9672553 -141111000 - AluSx SINE Alu -24 288 1 32 44 0 29 chr11 9672553 9672569 -141110984 + AT_rich Low_complexity Low_complexity 51 66 0 266 254 62 110 chr11 9672846 9673120 -141110433 - L1P LINE L1 -2705 3441 3155 2519 64 3 0 chr11 9673120 9673416 -141110137 - AluSg SINE Alu -13 297 1 1713 190 7 0 chr11 9673423 9673713 -141109840 - AluJo SINE Alu -20 292 1 266 254 62 110 chr11 9673713 9673930 -141109623 - L1P LINE L1 -2997 3149 2966 907 217 211 29 chr11 9673970 9674086 -141109467 - L1ME3A LINE L1 0 6170 6076 634 201 107 53 chr11 9674086 9674166 -141109387 - MER45A DNA AcHobo -1403 178 104 2441 71 0 0 chr11 9674166 9674470 -141109083 + AluSx SINE Alu 1 304 0 634 201 107 53 chr11 9674470 9674557 -141108996 - MER45A DNA AcHobo -1477 104 1 907 217 211 29 chr11 9674557 9674753 -141108800 - L1ME3A LINE L1 -94 6076 5801 1934 165 0 0 chr11 9674765 9675062 -141108491 + AluSx SINE Alu 1 297 -15 44036 33 21 1 chr11 9675125 9681155 -141102398 + L1PA3 LINE L1 3 6155 0 292 47 0 0 chr11 9681719 9681762 -141101791 + AluY SINE Alu 259 301 0 22 56 0 0 chr11 9681942 9681978 -141101575 + AT_rich Low_complexity Low_complexity 1 36 0 1883 154 11 0 chr11 9681993 9682278 -141101275 + AluJb SINE Alu 1 288 -24 1378 136 0 0 chr11 9682278 9682476 -141101077 + AluSg/x SINE Alu 107 304 -6 878 178 6 30 chr11 9682479 9682648 -141100905 + AluJo/FRAM SINE Alu 137 301 -1 408 141 0 16 chr11 9682652 9682716 -141100837 - MLT1D LTR MaLR -442 63 1 260 179 179 15 chr11 9682797 9682864 -141100689 - L1ME3A LINE L1 -2029 5779 5702 1572 161 3 49 chr11 9682939 9683243 -141100310 + AluJb SINE Alu 1 290 -22 1566 150 135 0 chr11 9683256 9683522 -141100031 + AluSx SINE Alu 1 302 0 781 226 52 0 chr11 9683539 9683694 -141099859 + FRAM SINE Alu 4 166 0 272 309 49 0 chr11 9683697 9683778 -141099775 - L1ME3A LINE L1 -2289 5519 5435 2606 67 0 3 chr11 9683784 9684096 -141099457 - AluY SINE Alu 0 311 1 353 196 20 20 chr11 9684130 9684232 -141099321 - L1ME3A LINE L1 -2360 5448 5347 1986 116 0 0 chr11 9684286 9684544 -141099009 + AluSx SINE Alu 1 258 -54 195 42 0 0 chr11 9684603 9684627 -141098926 + (TAAAA)n Simple_repeat Simple_repeat 1 24 0 2452 78 3 3 chr11 9685192 9685500 -141098053 + AluSq SINE Alu 1 308 -5 2235 104 0 3 chr11 9685500 9685797 -141097756 + AluSx SINE Alu 1 296 -16 180 0 0 0 chr11 9686606 9686626 -141096927 + (T)n Simple_repeat Simple_repeat 1 20 0 1140 188 76 144 chr11 9686879 9687036 -141096517 - MER4C LTR ERV1 0 465 299 2692 88 119 12 chr11 9687036 9687456 -141096097 - MER4C LTR ERV1 0 465 1 1140 188 76 144 chr11 9687456 9687797 -141095756 - MER4C LTR ERV1 -166 299 1 496 194 39 10 chr11 9688179 9688282 -141095271 - MER45B DNA AcHobo 0 1040 935 1163 108 84 25 chr11 9688282 9688355 -141095198 + L1MB3 LINE L1 5887 5954 -229 2014 100 0 81 chr11 9688355 9688696 -141094857 + AluSx SINE Alu 1 316 0 1163 108 84 25 chr11 9688696 9688824 -141094729 + L1MB3 LINE L1 5954 6101 -82 1107 162 0 0 chr11 9688824 9688997 -141094556 + MER2 DNA MER2_type 1 173 -172 915 132 0 0 chr11 9689092 9689221 -141094332 - FLAM_C SINE Alu -9 134 6 450 138 0 0 chr11 9689225 9689290 -141094263 + MER2 DNA MER2_type 271 335 -10 292 124 106 4 chr11 9689311 9689383 -141094170 + L1MB3 LINE L1 6100 6180 0 999 176 50 31 chr11 9689393 9689477 -141094076 - MER45B DNA AcHobo -643 938 857 2289 100 3 3 chr11 9689477 9689777 -141093776 + AluSx SINE Alu 1 300 -12 999 176 50 31 chr11 9689777 9689914 -141093639 - MER45B DNA AcHobo -724 857 713 1098 265 87 47 chr11 9690104 9690544 -141093009 - MER45C DNA AcHobo -347 606 101 1860 148 45 0 chr11 9690544 9690835 -141092718 + AluJb SINE Alu 1 304 -8 1098 265 87 47 chr11 9690835 9690941 -141092612 - MER45C DNA AcHobo -852 101 1 393 270 35 47 chr11 9692639 9692839 -141090714 + MIR SINE MIR 17 213 -49 23 54 0 0 chr11 9692944 9692981 -141090572 + AT_rich Low_complexity Low_complexity 1 37 0 1048 141 0 40 chr11 9694218 9694357 -141089196 + AluJo SINE Alu 1 133 -179 2262 70 3 33 chr11 9694357 9694659 -141088894 + AluY SINE Alu 1 293 -18 1048 141 0 40 chr11 9694659 9694696 -141088857 + AluJo SINE Alu 133 170 -142 823 138 0 0 chr11 9694750 9694866 -141088687 + FLAM_C SINE Alu 3 118 -15 26 50 0 0 chr11 9694866 9694906 -141088647 + AT_rich Low_complexity Low_complexity 1 40 0 1567 114 5 0 chr11 9695126 9695337 -141088216 - AluJb SINE Alu -20 292 81 1690 166 7 14 chr11 9695340 9695630 -141087923 - AluJb SINE Alu -24 288 1 634 246 66 44 chr11 9697065 9697293 -141086260 + L1ME LINE L1 1 233 -5837 255 327 18 0 chr11 9697313 9697423 -141086130 + L1ME LINE L1 290 401 -5669 2336 93 7 0 chr11 9697424 9697725 -141085828 - AluSx SINE Alu -9 303 1 24 0 0 0 chr11 9697727 9697751 -141085802 + AT_rich Low_complexity Low_complexity 1 24 0 2565 31 0 3 chr11 9697751 9698039 -141085514 - AluY SINE Alu -24 287 1 431 272 0 0 chr11 9698301 9698415 -141085138 + L1ME LINE L1 526 639 -5431 1488 88 0 34 chr11 9698422 9698626 -141084927 + AluSq SINE Alu 1 197 -116 2381 89 3 0 chr11 9698697 9699000 -141084553 + AluSq SINE Alu 1 304 -9 21 0 0 0 chr11 9699079 9699100 -141084453 + AT_rich Low_complexity Low_complexity 1 21 0 469 217 0 0 chr11 9699102 9699194 -141084359 + FLAM_A SINE Alu 2 93 -49 413 125 0 0 chr11 9699211 9699267 -141084286 - AluS SINE Alu -260 58 3 360 205 197 0 chr11 9699270 9699397 -141084156 - L1M4 LINE L1 -3016 3130 2979 2143 123 3 3 chr11 9699406 9699708 -141083845 - AluSx SINE Alu -10 302 1 1030 244 32 86 chr11 9699710 9699892 -141083661 + L1M4 LINE L1 3314 3504 -2642 180 0 0 0 chr11 9699892 9699912 -141083641 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1030 244 32 86 chr11 9699912 9700195 -141083358 + L1M4 LINE L1 3504 3750 -2396 1659 158 25 19 chr11 9700195 9700511 -141083042 + L1MC1 LINE L1 6016 6333 0 1030 244 32 86 chr11 9700511 9700569 -141082984 + L1M4 LINE L1 3750 3810 -2336 446 168 69 20 chr11 9700580 9700681 -141082872 + L1ME2 LINE L1 5419 5524 -638 469 110 27 0 chr11 9700681 9700754 -141082799 - AluSg SINE Alu -6 306 232 1061 198 37 8 chr11 9700862 9701105 -141082448 - AluSg SINE Alu -60 250 1 1320 176 18 116 chr11 9701107 9701309 -141082244 - AluJo SINE Alu -5 297 138 2182 89 3 0 chr11 9701309 9701591 -141081962 + AluSx SINE Alu 30 312 0 1320 176 18 116 chr11 9701591 9701717 -141081836 - AluJo SINE Alu -164 138 1 2004 205 45 2 chr11 9701755 9702175 -141081378 + L1ME2 LINE L1 5513 5950 -214 596 87 0 12 chr11 9702175 9702405 -141081148 + AluSx SINE Alu 1 296 -16 908 191 70 23 chr11 9702406 9702621 -141080932 + L1ME2 LINE L1 5940 6164 0 2372 76 0 13 chr11 9702885 9703189 -141080364 - AluSq SINE Alu -13 300 1 430 86 0 0 chr11 9703189 9703247 -141080306 - L1M LINE L1 -755 5423 5366 * 435 173 21 21 chr11 9703223 9703318 -141080235 - L1ME LINE L1 -589 5575 5481 763 217 50 75 chr11 9703352 9703871 -141079682 - L1ME LINE L1 -663 5501 5000 1367 213 167 35 chr11 9703944 9704399 -141079154 + L1MC4a LINE L1 5384 5898 -1910 1398 108 159 47 chr11 9704430 9704662 -141078891 + AluJb SINE Alu 1 258 -54 434 281 65 7 chr11 9704978 9705131 -141078422 - MIR SINE MIR -3 259 98 1710 184 0 16 chr11 9705605 9705921 -141077632 - AluJo SINE Alu 0 312 2 2401 89 0 16 chr11 9705936 9706251 -141077302 - AluY SINE Alu 0 311 2 2366 80 14 0 chr11 9706485 9706773 -141076780 - AluSp SINE Alu -21 292 1 328 204 0 25 chr11 9707432 9707655 -141075898 + AluJo SINE Alu 11 285 -17 1706 174 28 0 chr11 9707716 9708004 -141075549 - AluSx SINE Alu -14 298 3 2561 60 0 0 chr11 9709569 9709869 -141073684 + AluY SINE Alu 1 300 -11 2232 92 0 49 chr11 9709878 9710018 -141073535 + AluSp SINE Alu 1 146 -167 2378 82 3 22 chr11 9710018 9710334 -141073219 + AluY SINE Alu 1 310 -1 2232 92 0 49 chr11 9710334 9710520 -141073033 + AluSp SINE Alu 146 311 -2 25 31 0 0 chr11 9711135 9711167 -141072386 + AT_rich Low_complexity Low_complexity 1 32 0 2628 59 0 0 chr11 9711196 9711502 -141072051 + AluY SINE Alu 1 306 -5 748 85 85 0 chr11 9711661 9711779 -141071774 - L1MA7 LINE L1 -161 6130 6003 651 204 151 42 chr11 9713642 9713907 -141069646 - L1MC5 LINE L1 -50 7911 7618 974 211 43 100 chr11 9713926 9714386 -141069167 + L1MC4a LINE L1 6194 6627 -1181 195 129 0 0 chr11 9714790 9714821 -141068732 + (A)n Simple_repeat Simple_repeat 1 31 0 492 237 50 14 chr11 9715001 9715140 -141068413 + MER5B DNA MER1_type 35 178 0 2095 117 0 17 chr11 9715270 9715569 -141067984 - AluSx SINE Alu -13 299 6 2064 130 13 7 chr11 9715716 9716017 -141067536 - AluSx SINE Alu -9 303 1 1825 109 4 4 chr11 9716090 9716337 -141067216 + AluSx SINE Alu 45 291 -21 2341 95 0 3 chr11 9716344 9716639 -141066914 + AluSc SINE Alu 1 294 -15 2458 90 0 3 chr11 9716641 9716951 -141066602 + AluSc SINE Alu 1 309 0 21 57 0 0 chr11 9717000 9717035 -141066518 + AT_rich Low_complexity Low_complexity 1 35 0 4147 139 40 83 chr11 9717110 9717356 -141066197 + L1MB7 LINE L1 5148 5403 -781 2130 133 3 3 chr11 9717356 9717664 -141065889 + AluSg SINE Alu 1 308 -2 2176 104 0 36 chr11 9717664 9717973 -141065580 + AluSx SINE Alu 1 298 -14 4147 139 40 83 chr11 9717973 9718485 -141065068 + L1MB7 LINE L1 5402 5934 -250 2117 71 0 4 chr11 9718485 9718738 -141064815 + AluY SINE Alu 1 252 -59 4147 139 40 83 chr11 9718738 9718992 -141064561 + L1MB7 LINE L1 5934 6115 -69 2362 82 7 0 chr11 9718992 9719285 -141064268 - AluY SINE Alu -16 295 1 4147 139 40 83 chr11 9719285 9719343 -141064210 + L1MB7 LINE L1 6115 6174 -10 231 36 0 0 chr11 9719347 9719375 -141064178 + (A)n Simple_repeat Simple_repeat 1 28 0 2481 84 3 0 chr11 9719378 9719689 -141063864 + AluSp SINE Alu 1 312 -1 233 156 89 0 chr11 9720135 9720180 -141063373 + L2 LINE L2 3224 3272 0 1651 98 0 5 chr11 9720959 9721174 -141062379 + AluSg/x SINE Alu 83 296 -16 1794 171 0 13 chr11 9721364 9721663 -141061890 + AluJb SINE Alu 1 295 -17 1031 146 6 0 chr11 9721888 9722052 -141061501 - FAM SINE Alu -10 165 1 277 102 20 20 chr11 9722246 9722295 -141061258 + MIR3 SINE MIR 150 198 -10 245 264 19 0 chr11 9723176 9723229 -141060324 + MIR SINE MIR 48 101 -107 2662 50 0 0 chr11 9723481 9723783 -141059770 + AluY SINE Alu 1 302 -9 2139 120 3 3 chr11 9724081 9724380 -141059173 + AluSx SINE Alu 1 299 -13 2253 116 6 3 chr11 9724714 9725025 -141058528 + AluSx SINE Alu 1 312 0 431 274 65 6 chr11 9725636 9725804 -141057749 + MIR SINE MIR 16 193 -69 637 245 45 35 chr11 9725811 9726011 -141057542 - MIR SINE MIR -1 261 60 2248 79 14 0 chr11 9726151 9726450 -141057103 - AluSq SINE Alu 0 303 1 328 290 60 0 chr11 9726578 9726678 -141056875 - L2 LINE L2 -14 3258 3153 1508 164 11 35 chr11 9727001 9727288 -141056265 + AluJb SINE Alu 1 280 -32 189 0 0 0 chr11 9727288 9727309 -141056244 + (CAAT)n Simple_repeat Simple_repeat 4 24 0 2364 84 0 7 chr11 9728242 9728540 -141055013 + AluSc SINE Alu 1 296 -13 395 195 34 34 chr11 9728941 9729059 -141054494 + L1MB8 LINE L1 6031 6148 -30 1954 116 29 14 chr11 9729066 9729199 -141054354 + AluSq SINE Alu 2 132 -176 2093 133 0 7 chr11 9729199 9729507 -141054046 + AluSx SINE Alu 1 306 -6 1954 116 29 14 chr11 9729507 9729676 -141053877 + AluSq SINE Alu 132 308 0 1538 185 11 11 chr11 9729683 9729964 -141053589 + AluJb SINE Alu 1 281 -31 2296 75 3 10 chr11 9729964 9730258 -141053295 - AluY SINE Alu -18 293 1 673 207 7 22 chr11 9730374 9730509 -141053044 - FLAM_A SINE Alu 0 133 1 1789 178 3 3 chr11 9730581 9730868 -141052685 + AluJb SINE Alu 1 287 -25 1821 136 39 32 chr11 9731029 9731337 -141052216 + AluJo SINE Alu 3 312 0 343 207 82 52 chr11 9731350 9731408 -141052145 - L1ME4a LINE L1 -92 6029 5974 1717 160 23 39 chr11 9731408 9731715 -141051838 - AluJo SINE Alu -10 302 1 343 207 82 52 chr11 9731715 9731791 -141051762 - L1ME4a LINE L1 -147 5974 5891 24 0 0 0 chr11 9732829 9732853 -141050700 + AT_rich Low_complexity Low_complexity 1 24 0 895 211 0 0 chr11 9733356 9733512 -141050041 - AluSg/x SINE Alu -22 290 135 2278 86 10 3 chr11 9733957 9734258 -141049295 + AluY SINE Alu 1 303 -8 190 296 0 0 chr11 9734262 9734306 -141049247 + MIR SINE MIR 57 100 -108 2455 87 0 0 chr11 9734347 9734646 -141048907 + AluSq SINE Alu 1 299 -14 2341 105 0 0 chr11 9734647 9734951 -141048602 + AluY SINE Alu 1 304 -7 35 0 0 0 chr11 9735145 9735180 -141048373 + AT_rich Low_complexity Low_complexity 1 35 0 469 264 110 40 chr11 9735280 9735507 -141048046 - MIR SINE MIR -5 257 15 2051 126 38 0 chr11 9735873 9736166 -141047387 + AluSx SINE Alu 1 304 -8 2642 49 0 0 chr11 9736417 9736721 -141046832 + AluY SINE Alu 1 304 -7 959 173 0 63 chr11 9736724 9736915 -141046638 + AluSg/x SINE Alu 134 312 0 1806 142 0 65 chr11 9737006 9737331 -141046222 + AluSx SINE Alu 1 304 -8 2251 117 0 0 chr11 9737473 9737773 -141045780 + AluSc SINE Alu 1 300 -9 483 215 188 14 chr11 9737778 9737922 -141045631 + AluSg/x SINE Alu 135 303 -7 2150 124 7 3 chr11 9737926 9738232 -141045321 + AluSg SINE Alu 1 307 -3 1984 153 0 0 chr11 9738232 9738513 -141045040 + AluSx SINE Alu 6 286 -26 27 0 0 0 chr11 9738516 9738543 -141045010 + AT_rich Low_complexity Low_complexity 1 27 0 1386 100 116 4 chr11 9738546 9738796 -141044757 - MER33 DNA MER1_type -46 278 1 2420 68 0 0 chr11 9738949 9739242 -141044311 + AluY SINE Alu 1 293 -18 2479 71 0 0 chr11 9739249 9739545 -141044008 + AluY SINE Alu 1 296 -15 2295 112 7 0 chr11 9739617 9739913 -141043640 - AluSx SINE Alu -14 298 1 1646 179 15 4 chr11 9740137 9740410 -141043143 - AluJo SINE Alu -33 279 4 2424 93 7 3 chr11 9740606 9740916 -141042637 - AluSq SINE Alu -2 311 1 815 122 0 95 chr11 9742215 9742362 -141041191 + FLAM_C SINE Alu 1 133 0 450 119 0 30 chr11 9742746 9742813 -141040740 - AluJ/FLAM SINE Alu -242 70 6 451 304 47 0 chr11 9743214 9743362 -141040191 - MIR SINE MIR -14 248 94 2159 102 0 13 chr11 9743394 9743707 -141039846 + AluSg SINE Alu 1 309 -1 2219 97 3 7 chr11 9743973 9744263 -141039290 + AluSc SINE Alu 9 297 -12 686 35 0 76 chr11 9744263 9744408 -141039145 + (GGAA)n Simple_repeat Simple_repeat 1 134 0 34 42 0 0 chr11 9744435 9744483 -141039070 + AT_rich Low_complexity Low_complexity 1 48 0 2173 69 0 11 chr11 9744497 9744773 -141038780 + AluY SINE Alu 38 310 -1 2221 93 14 0 chr11 9744848 9745137 -141038416 + AluSx SINE Alu 1 293 -19 27 0 0 0 chr11 9745137 9745164 -141038389 + AT_rich Low_complexity Low_complexity 1 27 0 804 229 65 22 chr11 9745176 9745407 -141038146 - MIR SINE MIR 0 262 22 441 0 0 0 chr11 9745564 9745613 -141037940 + (CA)n Simple_repeat Simple_repeat 2 50 0 1969 122 14 37 chr11 9745621 9745917 -141037636 - AluSx SINE Alu -21 291 3 1347 211 26 68 chr11 9745947 9746255 -141037298 + AluJo SINE Alu 1 295 -7 1667 149 54 17 chr11 9746355 9746651 -141036902 + AluJo SINE Alu 1 307 -5 281 231 0 0 chr11 9746713 9746778 -141036775 - L3 LINE CR1 -175 1402 1338 2384 83 3 3 chr11 9748120 9748420 -141035133 - AluSp SINE Alu -13 300 1 25 31 0 0 chr11 9748590 9748622 -141034931 + AT_rich Low_complexity Low_complexity 1 32 0 2264 101 0 3 chr11 9748977 9749274 -141034279 + AluSg SINE Alu 1 296 -14 2024 158 3 0 chr11 9749300 9749611 -141033942 + AluJb SINE Alu 1 312 0 2238 100 3 17 chr11 9749676 9749976 -141033577 + AluSq SINE Alu 1 296 -17 1365 270 99 17 chr11 9750549 9751310 -141032243 + L2 LINE L2 2488 3313 0 1111 138 0 13 chr11 9751673 9751832 -141031721 + AluSx SINE Alu 1 157 -155 2202 105 0 32 chr11 9751989 9752303 -141031250 + AluSq SINE Alu 1 304 -9 2186 117 7 0 chr11 9752375 9752665 -141030888 - AluSx SINE Alu -18 294 3 724 171 85 0 chr11 9752688 9752817 -141030736 - FRAM SINE Alu -36 140 1 2090 122 10 7 chr11 9753652 9753948 -141029605 - AluSg SINE Alu -8 302 6 1959 139 10 7 chr11 9753987 9754281 -141029272 + AluSq SINE Alu 5 299 -14 2304 80 6 6 chr11 9754326 9754637 -141028916 + AluY SINE Alu 1 311 0 1484 171 6 70 chr11 9754778 9754924 -141028629 + AluJb SINE Alu 1 155 -168 2455 91 0 0 chr11 9754924 9755233 -141028320 + AluSq SINE Alu 2 310 -3 2130 111 35 0 chr11 9755236 9755524 -141028029 + AluSq SINE Alu 1 298 -15 1484 171 6 70 chr11 9755524 9755716 -141027837 + AluJb SINE Alu 157 323 0 22 35 0 0 chr11 9755741 9755770 -141027783 + AT_rich Low_complexity Low_complexity 1 29 0 1574 77 115 51 chr11 9755773 9756031 -141027522 + AluY SINE Alu 37 309 0 2396 92 3 0 chr11 9756037 9756342 -141027211 + AluSg SINE Alu 1 306 -4 2193 82 0 11 chr11 9756588 9756867 -141026686 - AluSg SINE Alu -20 290 15 225 0 0 0 chr11 9756897 9756922 -141026631 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 2207 104 0 0 chr11 9756922 9757202 -141026351 - AluSx SINE Alu -32 280 1 1075 130 12 12 chr11 9757217 9757379 -141026174 + AluJb SINE Alu 129 290 -22 378 74 0 0 chr11 9757397 9757451 -141026102 + (CA)n Simple_repeat Simple_repeat 2 55 0 271 183 103 63 chr11 9757452 9757578 -141025975 + L1MC4a LINE L1 5781 5911 -1897 21 0 0 0 chr11 9757691 9757712 -141025841 + AT_rich Low_complexity Low_complexity 1 21 0 3369 196 86 10 chr11 9757822 9758633 -141024920 + L1MB5 LINE L1 5227 6106 -68 2407 76 0 3 chr11 9758640 9758931 -141024622 - AluSq SINE Alu -21 292 3 892 179 48 43 chr11 9758954 9759161 -141024392 - AluJo SINE Alu -17 295 88 358 104 30 30 chr11 9759163 9759230 -141024323 + L1MB8 LINE L1 6112 6178 0 2340 92 0 3 chr11 9761982 9762288 -141021265 - AluSg SINE Alu -5 305 1 1247 60 0 0 chr11 9762399 9762550 -141021003 + AluY SINE Alu 159 309 -2 306 71 24 48 chr11 9763337 9763421 -141020132 + (TA)n Simple_repeat Simple_repeat 1 82 0 2109 86 46 0 chr11 9763465 9763745 -141019808 + AluSg SINE Alu 1 293 -17 2085 143 3 13 chr11 9763745 9763881 -141019672 + AluSq SINE Alu 2 138 -165 2095 99 0 65 chr11 9763881 9764015 -141019538 + AluY SINE Alu 1 142 -169 2339 107 0 0 chr11 9764015 9764324 -141019229 + AluSx SINE Alu 1 309 -3 2095 99 0 65 chr11 9764324 9764511 -141019042 + AluY SINE Alu 142 301 -10 2085 143 3 13 chr11 9764511 9764675 -141018878 + AluSq SINE Alu 138 298 -5 2255 64 10 14 chr11 9764682 9765024 -141018529 + AluY SINE Alu 2 296 -15 3771 184 75 33 chr11 9765030 9765651 -141017902 - L1MB7 LINE L1 -5 6179 5586 2341 50 11 0 chr11 9765651 9765928 -141017625 - AluY SINE Alu -12 299 20 3771 184 75 33 chr11 9765928 9765968 -141017585 - L1MB7 LINE L1 -598 5586 5549 1698 153 32 7 chr11 9765968 9766249 -141017304 - AluSx SINE Alu -24 288 1 3771 184 75 33 chr11 9766249 9766538 -141017015 - L1MB7 LINE L1 -635 5549 5274 2126 132 0 16 chr11 9766538 9766670 -141016883 + AluSx SINE Alu 5 138 -174 2156 121 3 0 chr11 9766670 9766968 -141016585 + AluSx SINE Alu 1 299 -13 2126 132 0 16 chr11 9766968 9767137 -141016416 + AluSx SINE Alu 138 301 -11 2109 99 0 33 chr11 9767137 9767272 -141016281 + AluSc SINE Alu 1 139 -170 3771 184 75 33 chr11 9767138 9767272 -141016281 - L1MB7 LINE L1 -910 5274 5147 2427 89 3 0 chr11 9767272 9767576 -141015977 + AluSp SINE Alu 1 305 -8 3771 184 75 33 chr11 9767576 9767864 -141015689 - L1MB7 LINE L1 -1037 5147 5039 2109 99 0 33 chr11 9767576 9767742 -141015811 + AluSc SINE Alu 139 292 -17 1689 165 21 10 chr11 9767864 9768155 -141015398 - AluJb SINE Alu -18 294 1 3771 184 75 33 chr11 9768155 9768418 -141015135 - L1MB7 LINE L1 -1145 5039 4789 2034 120 0 24 chr11 9768419 9768641 -141014912 - AluSx SINE Alu 0 311 97 4750 170 71 48 chr11 9768641 9769688 -141013865 + MER11C LTR ERVK 1 1071 0 2034 120 0 24 chr11 9769688 9769783 -141013770 - AluSx SINE Alu -214 97 1 2028 214 133 24 chr11 9769834 9770111 -141013442 - L1MB7 LINE L1 -1446 4700 4455 2023 100 23 27 chr11 9770111 9770412 -141013141 - AluSc SINE Alu -9 300 1 2028 214 133 24 chr11 9770412 9770471 -141013082 - L1MB7 LINE L1 -1691 4455 4404 2096 105 17 7 chr11 9770471 9770766 -141012787 - AluSq SINE Alu -15 298 1 2028 214 133 24 chr11 9770766 9770819 -141012734 - L1MB7 LINE L1 -1742 4404 4358 1869 113 94 0 chr11 9770819 9771094 -141012459 - AluSx SINE Alu -11 301 1 2028 214 133 24 chr11 9771094 9771370 -141012183 - L1MB7 LINE L1 -1788 4358 3960 2221 117 0 0 chr11 9771419 9771719 -141011834 + AluSp SINE Alu 1 300 -13 2228 112 3 0 chr11 9771796 9772091 -141011462 - AluSx SINE Alu -16 296 1 840 156 8 0 chr11 9772099 9772221 -141011332 - FLAM_C SINE Alu -10 123 1 2165 120 3 0 chr11 9772277 9772577 -141010976 + AluSg SINE Alu 1 301 -9 248 355 40 0 chr11 9772688 9772812 -141010741 + MLT1J LTR MaLR 92 220 -291 21 0 0 0 chr11 9773421 9773442 -141010111 + AT_rich Low_complexity Low_complexity 1 21 0 1823 101 0 16 chr11 9776566 9776823 -141006730 - AluSx SINE Alu -11 301 49 298 191 15 29 chr11 9776823 9776891 -141006662 + AluSg SINE Alu 63 129 -171 304 233 11 40 chr11 9776942 9777118 -141006435 + C-rich Low_complexity Low_complexity 4 174 0 1462 106 5 10 chr11 9777361 9777559 -141005994 + AluSg/x SINE Alu 68 264 -46 37 0 0 0 chr11 9777571 9777608 -141005945 + AT_rich Low_complexity Low_complexity 1 37 0 2243 112 0 10 chr11 9777658 9777970 -141005583 - AluSx SINE Alu -3 309 1 1787 175 11 0 chr11 9778057 9778342 -141005211 - AluJb SINE Alu -24 288 1 2484 60 7 0 chr11 9778353 9778652 -141004901 - AluSp SINE Alu -12 301 1 1089 141 6 0 chr11 9778743 9778906 -141004647 - AluSp SINE Alu -14 299 136 1999 154 3 3 chr11 9778917 9779222 -141004331 - AluSx SINE Alu -7 305 1 2219 107 0 0 chr11 9779250 9779568 -141003985 + AluY SINE Alu 1 311 0 22 70 0 0 chr11 9779675 9779718 -141003835 + AT_rich Low_complexity Low_complexity 1 43 0 2302 87 10 13 chr11 9782091 9782400 -141001153 + AluSc SINE Alu 2 309 0 202 211 88 0 chr11 9782465 9782522 -141001031 - MIR SINE MIR -27 235 174 2253 113 0 10 chr11 9782547 9782858 -141000695 + AluSq SINE Alu 1 308 -5 649 188 0 0 chr11 9782860 9782961 -141000592 - FLAM_A SINE Alu -32 110 10 192 284 30 15 chr11 9783145 9783212 -141000341 - L2 LINE L2 -12 3301 3234 2226 105 0 7 chr11 9783324 9783618 -140999935 - AluSg SINE Alu -18 292 1 198 91 0 0 chr11 9783682 9783715 -140999838 + (CAT)n Simple_repeat Simple_repeat 3 35 0 2484 57 10 19 chr11 9784394 9784708 -140998845 + AluY SINE Alu 1 311 0 2086 125 3 6 chr11 9784761 9785074 -140998479 + AluSx SINE Alu 1 312 0 834 161 73 0 chr11 9785089 9785226 -140998327 + AluSg/x SINE Alu 130 276 -36 224 39 39 39 chr11 9785233 9785285 -140998268 + (CAAA)n Simple_repeat Simple_repeat 2 53 0 24 0 0 0 chr11 9786277 9786301 -140997252 + AT_rich Low_complexity Low_complexity 1 24 0 1371 197 37 54 chr11 9787118 9787413 -140996140 - AluJo SINE Alu -12 290 1 2456 77 3 0 chr11 9787710 9788008 -140995545 + AluSp SINE Alu 1 299 -14 2388 76 13 3 chr11 9788646 9788948 -140994605 + AluSq SINE Alu 1 305 -8 2187 109 3 0 chr11 9789442 9789736 -140993817 + AluSx SINE Alu 6 300 -12 2326 97 0 3 chr11 9789938 9790246 -140993307 - AluSx SINE Alu -5 307 1 423 109 0 0 chr11 9790417 9790472 -140993081 + Alu SINE Alu 238 292 -17 621 172 62 0 chr11 9790510 9790638 -140992915 + L1MB3 LINE L1 6041 6176 -7 224 308 175 17 chr11 9791229 9791349 -140992204 + MIR SINE MIR 75 213 -49 202 296 217 9 chr11 9791514 9791629 -140991924 + MIR SINE MIR 12 150 -112 1123 152 173 12 chr11 9791724 9792011 -140991542 + MER1B DNA MER1_type 1 338 -1 28 0 0 0 chr11 9792406 9792434 -140991119 + AT_rich Low_complexity Low_complexity 1 28 0 1432 181 55 15 chr11 9792434 9792705 -140990848 - AluJo SINE Alu -30 282 1 833 115 0 0 chr11 9793798 9793911 -140989642 - AluSg/x SINE Alu -10 299 187 832 237 10 5 chr11 9794042 9794240 -140989313 + L1MD3 LINE L1 7719 7917 -78 2147 130 3 0 chr11 9794378 9794679 -140988874 + AluSx SINE Alu 1 302 -10 363 82 16 0 chr11 9794726 9794787 -140988766 + L1MB8 LINE L1 5268 5329 -817 1543 106 128 0 chr11 9794788 9795014 -140988539 + AluSq SINE Alu 1 255 -58 929 142 43 6 chr11 9795025 9795187 -140988366 + AluSg/x SINE Alu 138 305 -5 2300 192 143 14 chr11 9795204 9795862 -140987691 + L1MB8 LINE L1 5324 6135 -49 2139 99 13 35 chr11 9795865 9796041 -140987512 - AluSx SINE Alu -6 306 139 2417 76 0 13 chr11 9796041 9796343 -140987210 - AluY SINE Alu -12 299 2 2139 99 13 35 chr11 9796343 9796479 -140987074 - AluSx SINE Alu -173 139 1 811 165 0 15 chr11 9796481 9796614 -140986939 - FLAM_C SINE Alu -12 131 1 2097 116 7 3 chr11 9797183 9797477 -140986076 - AluSx SINE Alu -17 295 1 867 153 0 29 chr11 9799135 9799272 -140984281 - FLAM_C SINE Alu 0 133 1 545 211 57 171 chr11 9799424 9799640 -140983913 + Charlie1a DNA MER1_type 11 250 -2511 330 26 0 0 chr11 9799640 9799679 -140983874 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 545 211 57 171 chr11 9799679 9799695 -140983858 + Charlie1a DNA MER1_type 250 266 -2495 1899 98 4 0 chr11 9799695 9799940 -140983613 - AluSp SINE Alu -67 246 1 545 211 57 171 chr11 9799940 9799981 -140983572 + Charlie1a DNA MER1_type 266 252 -2509 2259 95 0 0 chr11 9799981 9800275 -140983278 - AluY SINE Alu -17 294 1 545 211 57 171 chr11 9800275 9800298 -140983255 + Charlie1a DNA MER1_type 251 275 -1180 2275 70 0 0 chr11 9800298 9800569 -140982984 - AluSg SINE Alu -18 292 22 510 232 18 0 chr11 9800572 9800677 -140982876 + Charlie1a DNA MER1_type 547 656 -2105 2047 101 4 11 chr11 9800677 9800953 -140982600 + AluSp SINE Alu 1 274 -39 598 217 145 6 chr11 9800960 9801126 -140982427 + Charlie1a DNA MER1_type 1264 1452 -3 1820 80 121 15 chr11 9801632 9801896 -140981657 - AluY SINE Alu -19 292 1 338 306 83 6 chr11 9802124 9802304 -140981249 + L1ME LINE L1 5625 5818 -303 216 0 0 0 chr11 9802350 9802374 -140981179 + (TA)n Simple_repeat Simple_repeat 2 25 0 2458 77 0 0 chr11 9802374 9802672 -140980881 - AluSc SINE Alu -11 298 1 1632 219 215 4 chr11 9802707 9803224 -140980329 + L1ME2 LINE L1 5502 6127 -37 2161 106 0 3 chr11 9803571 9803875 -140979678 + AluSg1 SINE Alu 1 303 0 2435 94 0 0 chr11 9803927 9804236 -140979317 + AluSq SINE Alu 1 309 -4 23 0 0 0 chr11 9804249 9804272 -140979281 + AT_rich Low_complexity Low_complexity 1 23 0 473 174 43 0 chr11 9804295 9804387 -140979166 + L1MB7 LINE L1 6080 6175 -9 676 248 44 60 chr11 9805031 9805346 -140978207 - L1M4 LINE L1 -2040 4106 3797 613 153 194 69 chr11 9805751 9805895 -140977658 - FRAM SINE Alu -4 162 1 2583 64 0 0 chr11 9806072 9806383 -140977170 - AluY SINE Alu 0 311 1 2131 113 0 13 chr11 9806602 9806904 -140976649 - AluSp SINE Alu -15 298 1 2173 70 11 0 chr11 9807109 9807382 -140976171 + AluSg SINE Alu 31 306 -4 440 259 133 14 chr11 9807969 9808112 -140975441 - MIR SINE MIR -102 160 1 292 225 28 14 chr11 9808345 9808416 -140975137 - MIR SINE MIR -114 148 77 39 22 0 0 chr11 9808470 9808516 -140975037 + AT_rich Low_complexity Low_complexity 1 46 0 478 114 29 0 chr11 9808727 9808797 -140974756 + AluS SINE Alu 225 296 -15 2368 52 42 0 chr11 9808820 9809109 -140974444 + AluY SINE Alu 1 301 -10 1788 138 10 52 chr11 9809158 9809463 -140974090 - AluJb SINE Alu -20 292 1 1216 218 45 8 chr11 10011947 10012213 -140771340 - AluJo SINE Alu -36 276 1 2450 53 3 17 chr11 10012244 10012545 -140771008 - AluY SINE Alu -14 297 1 1381 183 122 0 chr11 10012547 10012809 -140770744 - AluJo SINE Alu -7 295 2 646 93 131 19 chr11 10012920 10013027 -140770526 + MER21A LTR ERV1 15 133 -798 2088 123 0 3 chr11 10013027 10013311 -140770242 + AluSx SINE Alu 1 283 -29 495 227 7 27 chr11 10013407 10013557 -140769996 + MER39 LTR ERV1 219 365 -342 189 0 0 0 chr11 10013979 10014000 -140769553 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 1328 154 33 9 chr11 10014014 10014228 -140769325 - AluJb SINE Alu -30 282 64 2291 89 3 3 chr11 10014228 10014520 -140769033 - AluSp SINE Alu -21 292 1 1914 124 4 0 chr11 10014759 10015018 -140768535 - AluSq SINE Alu -53 260 1 1785 170 3 14 chr11 10015215 10015509 -140768044 + AluJo SINE Alu 9 299 -13 534 98 0 0 chr11 10015529 10015611 -140767942 + (GGGA)n Simple_repeat Simple_repeat 1 82 0 200 224 15 0 chr11 10016270 10016337 -140767216 + CT-rich Low_complexity Low_complexity 1 68 0 237 277 128 69 chr11 10016585 10016773 -140766780 + MIR SINE MIR 37 235 -27 1823 163 3 3 chr11 10016792 10017098 -140766455 + AluJb SINE Alu 1 306 0 214 304 132 25 chr11 10017120 10017446 -140766107 + L2 LINE L2 1728 2088 -1226 3270 146 2 28 chr11 10017467 10018001 -140765552 + MER1A DNA MER1_type 1 520 -9 2348 93 30 0 chr11 10018128 10018430 -140765123 + AluSx SINE Alu 1 311 -1 671 254 98 23 chr11 10018822 10019086 -140764467 + L2 LINE L2 2915 3198 -115 493 49 0 0 chr11 10019185 10019246 -140764307 + AluY SINE Alu 2 62 -256 1315 109 0 6 chr11 10019246 10019420 -140764133 + AluSg/x SINE Alu 97 269 -43 626 170 0 0 chr11 10019423 10019517 -140764036 + AluSg/x SINE Alu 72 165 -145 314 327 19 19 chr11 10019911 10020018 -140763535 - MLT1B-int LTR MaLR -509 862 756 1704 147 25 39 chr11 10020039 10020325 -140763228 - AluJo SINE Alu -30 282 1 783 186 0 0 chr11 10020506 10020635 -140762918 - FLAM_C SINE Alu -4 129 1 673 183 8 0 chr11 10020970 10021096 -140762457 - FLAM_A SINE Alu -5 137 11 225 333 0 0 chr11 10021110 10021188 -140762365 - MLT1B-int LTR MaLR -961 410 333 457 111 0 0 chr11 10021190 10021253 -140762300 - MLT1B LTR MaLR 0 390 328 1779 165 0 20 chr11 10021555 10021852 -140761701 - AluJo SINE Alu -21 291 1 357 312 16 24 chr11 10022020 10022145 -140761408 - L2 LINE L2 -1 3271 3148 2091 133 0 13 chr11 10022857 10023194 -140760359 - AluSx SINE Alu 0 312 1 612 144 17 0 chr11 10023803 10023976 -140759577 + (TA)n Simple_repeat Simple_repeat 1 176 0 383 154 51 29 chr11 10023977 10024152 -140759401 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 31 0 0 0 chr11 10024152 10024183 -140759370 + AT_rich Low_complexity Low_complexity 1 31 0 198 103 23 58 chr11 10024183 10024270 -140759283 + (TATAA)n Simple_repeat Simple_repeat 2 85 0 373 192 92 67 chr11 10024273 10024393 -140759160 + L1MCa LINE L1 1952 2074 -4352 1604 174 30 33 chr11 10024518 10024817 -140758736 - AluJo SINE Alu -14 298 1 3229 157 33 117 chr11 10025084 10025848 -140757705 - MER21A LTR ERV1 -19 912 213 2436 84 3 0 chr11 10026800 10027110 -140756443 - AluSp SINE Alu 0 313 3 2334 106 0 0 chr11 10027111 10027412 -140756141 - AluSg1 SINE Alu -8 301 1 1997 150 0 0 chr11 10028286 10028572 -140754981 - AluJo SINE Alu -26 286 1 1664 164 27 14 chr11 10028757 10029050 -140754503 - AluJb SINE Alu -5 307 11 299 328 51 69 chr11 10029227 10029559 -140753994 - L2 LINE L2 -22 3250 2925 318 50 0 0 chr11 10030609 10030649 -140752904 + (CA)n Simple_repeat Simple_repeat 1 40 0 1958 132 16 13 chr11 10030784 10031087 -140752466 - AluSq SINE Alu -1 312 9 442 257 9 0 chr11 10031282 10031387 -140752166 - L2 LINE L2 -507 2807 2702 1017 147 0 85 chr11 10031424 10031601 -140751952 - AluJo SINE Alu -148 164 3 1355 144 5 0 chr11 10031621 10031822 -140751731 + AluSg/x SINE Alu 87 288 -24 342 98 0 0 chr11 10031823 10031874 -140751679 + (TG)n Simple_repeat Simple_repeat 1 51 0 445 295 58 31 chr11 10032017 10032342 -140751211 - L1MEd LINE L1 -4908 1211 878 488 290 141 19 chr11 10033178 10033440 -140750113 + L2 LINE L2 1832 2125 -1189 716 169 0 0 chr11 10033448 10033566 -140749987 + FLAM_C SINE Alu 7 124 -19 24 0 0 0 chr11 10033568 10033592 -140749961 + AT_rich Low_complexity Low_complexity 1 24 0 829 254 33 12 chr11 10033620 10033860 -140749693 + L2 LINE L2 2159 2403 -911 607 120 11 0 chr11 10034197 10034289 -140749264 - AluS SINE Alu -216 97 5 862 154 0 0 chr11 10034346 10034469 -140749084 + FLAM_C SINE Alu 3 125 -18 2293 219 70 10 chr11 10034524 10035035 -140748518 - MLT1F LTR MaLR 0 542 1 182 162 27 0 chr11 10035091 10035128 -140748425 + MIR SINE MIR 117 154 -108 216 111 0 0 chr11 10035143 10035179 -140748374 + (T)n Simple_repeat Simple_repeat 1 36 0 2209 105 7 3 chr11 10035744 10036040 -140747513 - AluSg SINE Alu -13 297 1 22 0 0 0 chr11 10036042 10036064 -140747489 + AT_rich Low_complexity Low_complexity 1 22 0 1127 288 65 47 chr11 10036177 10036900 -140746653 + MLT2F LTR ERVL 10 626 -2 1617 49 0 0 chr11 10036946 10037129 -140746424 + AluY SINE Alu 1 183 -128 2409 100 3 0 chr11 10037300 10037610 -140745943 + AluSx SINE Alu 1 311 -1 207 0 0 0 chr11 10037862 10037885 -140745668 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2308 81 0 3 chr11 10040536 10040819 -140742734 + AluSx SINE Alu 1 282 -30 1343 184 39 12 chr11 10041047 10041303 -140742250 + AluJo SINE Alu 1 263 -49 1570 108 0 5 chr11 10041404 10041616 -140741937 + AluSg/x SINE Alu 86 296 -14 21 36 0 0 chr11 10043350 10043378 -140740175 + AT_rich Low_complexity Low_complexity 1 28 0 1115 126 0 13 chr11 10043449 10043608 -140739945 + AluJo SINE Alu 125 281 -31 33 0 8 0 chr11 10043608 10043686 -140739867 + AT_rich Low_complexity Low_complexity 1 33 0 26 30 0 0 chr11 10043815 10043848 -140739705 + AT_rich Low_complexity Low_complexity 1 33 0 1885 149 13 3 chr11 10044381 10044682 -140738871 + AluJb SINE Alu 1 304 -8 333 282 110 23 chr11 10045703 10045938 -140737615 - L1MC/D LINE L1 -456 5665 5504 280 344 0 0 chr11 10046453 10046546 -140737007 + MER5B DNA MER1_type 24 116 -62 1778 129 65 14 chr11 10046563 10046841 -140736712 - AluSx SINE Alu -12 300 9 2275 108 3 3 chr11 10046986 10047291 -140736262 + AluSg SINE Alu 2 306 -4 350 262 62 0 chr11 10047432 10047577 -140735976 + L1MC5 LINE L1 7311 7464 -497 272 237 113 41 chr11 10047610 10047707 -140735846 + L1MC4 LINE L1 7634 7737 -305 874 211 18 0 chr11 10047803 10047974 -140735579 + AluSg/x SINE Alu 115 288 -24 577 151 0 0 chr11 10048681 10048767 -140734786 - AluJ/FLAM SINE Alu -225 87 2 3956 171 4 19 chr11 10048867 10048897 -140734656 + L1M4 LINE L1 3239 3268 -2878 1702 167 14 3 chr11 10048897 10049191 -140734362 + AluJb SINE Alu 3 299 -13 3956 171 4 19 chr11 10049191 10049895 -140733658 + L1M4 LINE L1 3268 3962 -2184 300 247 74 39 chr11 10050302 10050533 -140733020 + L1MEc LINE L1 1428 1666 -4730 22 70 0 0 chr11 10050721 10050764 -140732789 + AT_rich Low_complexity Low_complexity 1 43 0 427 305 60 54 chr11 10050813 10051643 -140731910 + L1M4 LINE L1 4335 5169 -977 873 136 0 0 chr11 10051664 10051782 -140731771 + FLAM_C SINE Alu 1 118 -25 30 0 0 0 chr11 10051782 10051812 -140731741 + AT_rich Low_complexity Low_complexity 1 30 0 2156 125 3 0 chr11 10051943 10052247 -140731306 + AluSx SINE Alu 3 307 -5 2368 115 0 0 chr11 10052350 10052654 -140730899 + AluSx SINE Alu 1 304 -8 2168 123 0 3 chr11 10053065 10053358 -140730195 - AluSg SINE Alu -18 292 1 1285 127 0 11 chr11 10053369 10053558 -140729995 - AluSx SINE Alu -14 298 112 650 234 135 35 chr11 10053923 10054005 -140729548 - L2 LINE L2 -266 3047 2975 1697 193 0 16 chr11 10054005 10054316 -140729237 - AluJb SINE Alu -6 306 1 650 234 135 35 chr11 10054316 10054634 -140728919 - L2 LINE L2 -338 2975 2596 2210 110 3 0 chr11 10054693 10054993 -140728560 - AluSp SINE Alu -12 301 1 1036 76 15 0 chr11 10054993 10055124 -140728429 - AluSx SINE Alu -175 137 5 595 242 124 60 chr11 10055137 10055451 -140728102 - L2 LINE L2 -797 2517 2184 * 1995 235 113 32 chr11 10055449 10055957 -140727596 + L2 LINE L2 2247 2826 -487 2375 94 7 3 chr11 10055957 10056265 -140727288 + AluSc SINE Alu 1 309 0 1995 235 113 32 chr11 10056265 10056473 -140727080 + L2 LINE L2 2826 3016 -297 195 139 0 0 chr11 10056613 10056649 -140726904 + (TTCA)n Simple_repeat Simple_repeat 4 39 0 2178 107 31 0 chr11 10056740 10057030 -140726523 + AluSx SINE Alu 1 299 -13 1755 180 27 3 chr11 10057889 10058189 -140725364 - AluJb SINE Alu -5 307 1 336 203 16 0 chr11 10058303 10058367 -140725186 + MER58 DNA MER1_type 2356 2420 0 510 280 56 36 chr11 10058670 10059021 -140724532 + L2 LINE L2 2889 3306 -7 977 311 107 28 chr11 10059212 10059884 -140723669 - L2 LINE L2 -1480 1834 1080 893 200 16 5 chr11 10059884 10060069 -140723484 + MER5A DNA MER1_type 1 187 -2 977 311 107 28 chr11 10060069 10060243 -140723310 - L2 LINE L2 -2234 1080 921 1715 221 21 18 chr11 10060250 10060630 -140722923 - MLT1E2 LTR MaLR 0 626 246 889 141 0 28 chr11 10060632 10060774 -140722779 - FLAM_C SINE Alu -5 138 1 1031 227 8 25 chr11 10060823 10061065 -140722488 - MLT1E2 LTR MaLR -388 238 1 387 293 64 16 chr11 10061136 10061324 -140722229 - L2 LINE L2 -2498 816 620 199 310 0 0 chr11 10061348 10061419 -140722134 + MER5A DNA MER1_type 36 106 -83 24 53 0 0 chr11 10061624 10061662 -140721891 + AT_rich Low_complexity Low_complexity 1 38 0 845 156 0 0 chr11 10061662 10061784 -140721769 - FLAM_C SINE Alu -16 127 6 4349 121 15 126 chr11 10061862 10063415 -140720138 + pTR5 LTR ERV1 741 2606 0 836 222 233 15 chr11 10063415 10063818 -140719735 + Charlie2b DNA MER1_type 176 666 -2116 811 208 49 70 chr11 10063908 10064075 -140719478 + Charlie2a DNA MER1_type 1528 1688 -1174 830 176 0 0 chr11 10064075 10064206 -140719347 + FLAM_C SINE Alu 3 133 0 811 208 49 70 chr11 10064206 10064322 -140719231 + Charlie2a DNA MER1_type 1688 1805 -1057 455 69 0 0 chr11 10064322 10064380 -140719173 - Alu SINE Alu -14 295 238 493 232 24 65 chr11 10064484 10064598 -140718955 + L2 LINE L2 2233 2339 -975 1507 177 10 20 chr11 10064598 10064892 -140718661 + AluJb SINE Alu 1 291 -21 493 232 24 65 chr11 10064892 10064945 -140718608 + L2 LINE L2 2339 2393 -921 2058 137 0 0 chr11 10064984 10065291 -140718262 - AluSx SINE Alu -5 307 1 1516 232 60 64 chr11 10065293 10065627 -140717926 + L2 LINE L2 2784 3116 -197 1436 179 32 21 chr11 10065627 10065912 -140717641 - AluJo SINE Alu -24 288 1 1516 232 60 64 chr11 10065912 10066108 -140717445 + L2 LINE L2 3116 3311 -2 488 172 0 50 chr11 10066543 10066642 -140716911 + FLAM SINE Alu 38 131 -12 22 0 0 0 chr11 10066642 10066664 -140716889 + AT_rich Low_complexity Low_complexity 1 22 0 2187 95 3 0 chr11 10066671 10066975 -140716578 + AluSp SINE Alu 1 305 -8 261 269 192 10 chr11 10067173 10067277 -140716276 - MLT1K LTR MaLR -355 233 111 240 266 203 28 chr11 10067733 10067876 -140715677 + L2 LINE L2 331 498 -2816 503 305 40 34 chr11 10067903 10068228 -140715325 + L2 LINE L2 603 929 -2385 509 386 92 16 chr11 10068846 10069356 -140714197 + L2 LINE L2 1831 2379 -935 2184 89 23 3 chr11 10069380 10069683 -140713870 + AluSx SINE Alu 1 309 -3 21 36 0 0 chr11 10069809 10069837 -140713716 + AT_rich Low_complexity Low_complexity 1 28 0 2157 95 0 0 chr11 10070058 10070369 -140713184 + AluSx SINE Alu 1 311 0 1200 113 0 11 chr11 10070373 10070559 -140712994 + AluSg/x SINE Alu 127 310 0 2131 74 14 7 chr11 10071441 10071726 -140711827 + AluSq SINE Alu 1 287 -26 240 35 0 0 chr11 10071729 10071758 -140711795 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 317 173 0 0 chr11 10071896 10071948 -140711605 - Tigger2a DNA MER2_type -67 377 326 729 138 9 0 chr11 10071952 10072068 -140711485 + L1 LINE L1 4699 4815 -1331 1669 112 84 21 chr11 10072078 10072364 -140711189 - Tigger2a DNA MER2_type -130 304 1 4514 179 32 34 chr11 10072606 10074134 -140709419 - L1MB2 LINE L1 -1 6170 4640 1866 117 29 0 chr11 10074134 10074407 -140709146 - AluSq SINE Alu -31 282 2 4514 179 32 34 chr11 10074407 10074561 -140708992 - L1MB2 LINE L1 -1531 4640 4501 2337 93 3 0 chr11 10074561 10074872 -140708681 - AluSp SINE Alu -1 312 1 4514 179 32 34 chr11 10074872 10074976 -140708577 - L1MB2 LINE L1 -1670 4501 4398 593 194 0 9 chr11 10074995 10075103 -140708450 - FLAM_C SINE Alu -12 131 25 2146 162 25 10 chr11 10075114 10075521 -140708032 - L1MB2 LINE L1 -1735 4411 3999 2309 82 3 0 chr11 10075648 10075951 -140707602 - AluSg SINE Alu -6 304 1 190 250 0 0 chr11 10076469 10076509 -140707044 - MIR SINE MIR -64 198 159 370 282 117 28 chr11 10076913 10077126 -140706427 + L2 LINE L2 2829 3060 -212 342 0 0 0 chr11 10077503 10077541 -140706012 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 940 236 64 130 chr11 10077677 10077735 -140705818 - MLT1G LTR MaLR -7 583 523 2175 101 0 0 chr11 10077735 10078033 -140705520 - AluSg1 SINE Alu -11 298 1 940 236 64 130 chr11 10078033 10078537 -140705016 - MLT1G LTR MaLR -67 523 58 626 207 52 0 chr11 10078730 10078846 -140704707 - MER68 LTR ERV1 0 562 441 1735 150 11 0 chr11 10078846 10079120 -140704433 + AluSx SINE Alu 1 277 -35 363 23 0 0 chr11 10079151 10079195 -140704358 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1033 171 0 0 chr11 10079216 10079386 -140704167 - AluJo/FRAM SINE Alu -8 304 135 1504 193 24 0 chr11 10079387 10079683 -140703870 - AluJb SINE Alu -9 303 1 358 85 34 34 chr11 10079684 10079743 -140703810 - MER68 LTR ERV1 -503 59 1 2194 106 3 3 chr11 10079817 10080128 -140703425 + AluSx SINE Alu 1 311 -1 946 132 7 13 chr11 10080142 10080294 -140703259 + AluSq/x SINE Alu 1 151 -161 956 158 0 0 chr11 10080395 10080547 -140703006 + AluJb SINE Alu 157 308 -4 2097 86 7 13 chr11 10080898 10081199 -140702354 - AluSg SINE Alu -11 299 1 757 132 0 47 chr11 10081237 10081366 -140702187 - FRAM SINE Alu -22 154 32 203 313 31 21 chr11 10081392 10081488 -140702065 + L2 LINE L2 2988 3084 -188 993 285 115 26 chr11 10081672 10082177 -140701376 - MLT1K LTR MaLR -12 576 27 1610 131 7 53 chr11 10082280 10082562 -140700991 + AluJo SINE Alu 31 299 -13 2242 113 0 0 chr11 10083363 10083674 -140699879 - AluSx SINE Alu -1 311 1 1914 140 7 0 chr11 10084544 10084837 -140698716 - AluSx SINE Alu -13 299 5 464 289 134 30 chr11 10084837 10085038 -140698515 + MIR SINE MIR 30 251 -11 306 378 30 22 chr11 10085117 10085252 -140698301 - L3b LINE CR1 -108 1475 1340 2219 90 0 29 chr11 10085287 10085598 -140697955 + AluSx SINE Alu 1 302 -10 195 232 12 98 chr11 10085702 10085784 -140697769 - L2 LINE L2 -11 3261 3187 889 260 64 35 chr11 10086218 10086530 -140697023 + MER102b DNA MER1_type 21 341 0 2130 103 0 0 chr11 10086782 10087072 -140696481 - AluSx SINE Alu -22 290 1 2011 128 27 0 chr11 10087236 10087533 -140696020 - AluSx SINE Alu -7 305 1 256 200 0 18 chr11 10087592 10087647 -140695906 - MLT1L LTR MaLR -16 599 546 1072 169 0 76 chr11 10087647 10087883 -140695670 - AluJb SINE Alu -9 303 86 302 146 0 0 chr11 10087883 10087931 -140695622 - MLT1L LTR MaLR -65 550 503 608 213 47 0 chr11 10088112 10088239 -140695314 - MLT1L LTR MaLR -341 274 142 1388 154 33 18 chr11 10088699 10088972 -140694581 - L1MB8 LINE L1 -2 6176 5900 1473 87 0 0 chr11 10089084 10089280 -140694273 + AluSg/x SINE Alu 117 312 0 225 178 0 0 chr11 10089453 10089498 -140694055 + T-rich Low_complexity Low_complexity 1 45 0 342 283 10 10 chr11 10090024 10090123 -140693430 - MIR3 SINE MIR -10 198 100 2460 50 3 0 chr11 10090173 10090471 -140693082 - AluSp SINE Alu -14 299 1 181 143 232 18 chr11 10092463 10092519 -140691034 - MIR3 SINE MIR -5 203 136 1417 238 88 7 chr11 10092532 10092939 -140690614 - L1ME1 LINE L1 -19 6147 5708 1529 213 47 14 chr11 10092939 10093206 -140690347 - L1MDa LINE L1 -3847 2693 2436 1959 145 0 0 chr11 10093206 10093509 -140690044 - AluSx SINE Alu -9 303 1 1529 213 47 14 chr11 10093509 10093831 -140689722 - L1MDa LINE L1 -4104 2436 2082 2080 121 0 0 chr11 10093848 10094146 -140689407 - AluSg SINE Alu -12 298 1 736 172 0 8 chr11 10094158 10094280 -140689273 - AluSq/x SINE Alu -184 129 9 193 292 97 0 chr11 10094292 10094364 -140689189 - MIR SINE MIR -103 105 27 216 0 0 0 chr11 10094373 10094397 -140689156 + (GA)n Simple_repeat Simple_repeat 1 24 0 1381 188 7 7 chr11 10094397 10094673 -140688880 - AluJb SINE Alu -34 278 3 1626 181 14 0 chr11 10094687 10094980 -140688573 - AluJb SINE Alu -11 301 5 2180 112 0 0 chr11 10095016 10095312 -140688241 - AluSx SINE Alu -16 296 1 204 207 35 52 chr11 10095695 10095753 -140687800 - L2 LINE L2 0 3272 3216 1761 130 67 0 chr11 10096383 10096653 -140686900 - AluSx SINE Alu -24 288 1 1043 140 0 0 chr11 10096970 10097120 -140686433 + AluSq/x SINE Alu 2 151 -161 404 170 53 23 chr11 10097221 10097318 -140686235 - AluSc SINE Alu -91 208 119 982 238 114 65 chr11 10097353 10097450 -140686103 - L1MC4a LINE L1 -1944 5864 5773 2028 105 23 10 chr11 10097450 10097755 -140685798 + AluSg SINE Alu 1 309 -1 982 238 114 65 chr11 10097755 10097946 -140685607 - L1MC4a LINE L1 -2035 5773 5593 306 0 0 0 chr11 10097946 10097980 -140685573 + (CA)n Simple_repeat Simple_repeat 2 35 0 982 238 114 65 chr11 10097980 10098136 -140685417 - L1MC4a LINE L1 -2215 5593 5397 1877 86 4 0 chr11 10099044 10099336 -140684217 + AluSg SINE Alu 37 329 0 559 192 0 0 chr11 10100086 10100185 -140683368 - U13 snRNA snRNA -2 102 4 227 261 11 57 chr11 10101912 10102000 -140681553 - L3 LINE CR1 -852 725 642 36 53 0 0 chr11 10103643 10103700 -140679853 + GC_rich Low_complexity Low_complexity 1 57 0 24 67 0 0 chr11 10103777 10103822 -140679731 + GC_rich Low_complexity Low_complexity 1 45 0 35 78 0 0 chr11 10104020 10104097 -140679456 + GC_rich Low_complexity Low_complexity 1 77 0 237 65 0 0 chr11 10104152 10104183 -140679370 + (TCC)n Simple_repeat Simple_repeat 2 32 0 24 32 0 0 chr11 10104228 10104259 -140679294 + GC_rich Low_complexity Low_complexity 1 31 0 33 0 0 0 chr11 10104753 10104786 -140678767 + GC_rich Low_complexity Low_complexity 1 33 0 2138 98 3 22 chr11 10105509 10105825 -140677728 - AluSx SINE Alu -2 310 1 311 282 264 17 chr11 10105827 10105880 -140677673 - L1ME LINE L1 -386 5735 5696 1817 92 32 51 chr11 10105880 10106194 -140677359 - AluSx SINE Alu -4 308 1 311 282 264 17 chr11 10106194 10106314 -140677239 - L1ME LINE L1 -425 5696 5519 1576 179 41 0 chr11 10106859 10107150 -140676403 - AluSx SINE Alu -4 308 6 24 53 0 0 chr11 10107164 10107202 -140676351 + AT_rich Low_complexity Low_complexity 1 38 0 184 303 106 0 chr11 10107258 10107324 -140676229 - L3 LINE CR1 -1261 316 244 * 396 277 91 22 chr11 10107290 10107473 -140676080 - MIR SINE MIR -60 202 3 485 277 92 8 chr11 10109306 10109454 -140674099 - MIR3 SINE MIR -36 172 30 233 278 144 0 chr11 10110365 10110455 -140673098 + L1ME4a LINE L1 5353 5455 -2353 445 184 10 78 chr11 10110534 10110637 -140672916 - MER20 DNA MER1_type -5 214 119 322 276 71 63 chr11 10110640 10110806 -140672747 + L1ME4a LINE L1 5724 5895 -226 1610 153 44 0 chr11 10110806 10111119 -140672434 + AluJb SINE Alu 1 325 0 322 276 71 63 chr11 10111119 10111190 -140672363 + L1ME4a LINE L1 5895 5964 -157 36 23 0 0 chr11 10111382 10111425 -140672128 + AT_rich Low_complexity Low_complexity 1 43 0 1747 185 14 71 chr11 10111440 10111521 -140672032 + MLT1A1 LTR MaLR 1 85 -280 2030 94 0 30 chr11 10111521 10111818 -140671735 + AluSc SINE Alu 2 289 -20 1747 185 14 71 chr11 10111818 10112103 -140671450 + MLT1A1 LTR MaLR 85 346 -19 555 128 12 0 chr11 10112255 10112341 -140671212 + AluSg/x SINE Alu 212 298 -11 1881 172 7 0 chr11 10113075 10113366 -140670187 + AluJo SINE Alu 1 293 -19 31 0 0 0 chr11 10113420 10113451 -140670102 + AT_rich Low_complexity Low_complexity 1 31 0 233 304 108 39 chr11 10113669 10113771 -140669782 + LTR16B LTR ERVL 119 227 -237 1832 147 6 55 chr11 10114011 10114337 -140669216 - AluJb SINE Alu -2 310 1 1987 144 7 3 chr11 10114643 10114949 -140668604 + AluSx SINE Alu 1 307 -5 28 61 0 0 chr11 10114982 10115031 -140668522 + AT_rich Low_complexity Low_complexity 1 49 0 423 214 151 31 chr11 10115550 10115709 -140667844 - MIR3 SINE MIR -25 183 6 386 286 26 94 chr11 10115796 10115988 -140667565 + L2 LINE L2 3021 3199 -73 936 115 0 183 chr11 10116458 10116693 -140666860 - 7SK RNA RNA 0 193 2 872 211 100 21 chr11 10116779 10116921 -140666632 - MER33 DNA MER1_type -2273 312 183 2086 117 0 0 chr11 10116921 10117202 -140666351 + AluSq SINE Alu 19 299 -14 872 211 100 21 chr11 10117202 10117348 -140666205 - MER33 DNA MER1_type -2402 183 1 2187 106 0 3 chr11 10117650 10117972 -140665581 + AluY SINE Alu 1 321 0 189 0 0 0 chr11 10119055 10119076 -140664477 + (A)n Simple_repeat Simple_repeat 1 21 0 313 101 0 117 chr11 10119296 10119373 -140664180 + Alu SINE Alu 1 47 -256 947 195 5 70 chr11 10120536 10120751 -140662802 - AluJo SINE Alu -27 285 85 1495 205 10 27 chr11 10120752 10121049 -140662504 - AluJo SINE Alu -15 297 6 195 340 0 0 chr11 10121056 10121103 -140662450 + MIR SINE MIR 46 92 -170 2277 113 2 59 chr11 10121128 10121156 -140662397 - Tigger2a DNA MER2_type -2316 392 364 1387 155 143 19 chr11 10121156 10121414 -140662139 - AluSg SINE Alu -20 290 1 2277 113 2 59 chr11 10121414 10121794 -140661759 - Tigger2a DNA MER2_type -2344 364 7 309 296 144 8 chr11 10121795 10121920 -140661633 + MIR SINE MIR 103 244 -18 192 40 0 0 chr11 10121959 10121984 -140661569 + (CTG)n Simple_repeat Simple_repeat 2 26 0 30 27 0 0 chr11 10122278 10122315 -140661238 + AT_rich Low_complexity Low_complexity 1 37 0 1597 187 3 47 chr11 10122315 10122615 -140660938 - AluJb SINE Alu -25 287 1 311 318 99 26 chr11 10123046 10123197 -140660356 + MIR3 SINE MIR 20 181 -27 198 0 0 0 chr11 10123615 10123637 -140659916 + (TA)n Simple_repeat Simple_repeat 2 23 0 403 225 181 0 chr11 10123798 10123958 -140659595 - L1MC4a LINE L1 -1860 5948 5760 24 32 0 0 chr11 10124132 10124163 -140659390 + AT_rich Low_complexity Low_complexity 1 31 0 287 246 43 14 chr11 10125023 10125092 -140658461 - MIR3 SINE MIR -51 157 87 195 324 14 28 chr11 10125277 10125348 -140658205 + L2 LINE L2 3239 3308 -5 6258 51 14 14 chr11 10125979 10126406 -140657147 + L1PA8A LINE L1 5254 5683 -448 2151 120 0 17 chr11 10126406 10126707 -140656846 + AluSq SINE Alu 3 298 -15 6258 51 14 14 chr11 10126707 10127128 -140656425 + L1PA8A LINE L1 5682 6102 -29 198 91 0 0 chr11 10127129 10127162 -140656391 + (TTTTTG)n Simple_repeat Simple_repeat 2 34 0 1161 142 25 15 chr11 10127205 10127409 -140656144 - AluJb SINE Alu -22 290 85 21 0 0 0 chr11 10127705 10127726 -140655827 + AT_rich Low_complexity Low_complexity 1 21 0 234 174 0 0 chr11 10127889 10127935 -140655618 + (CA)n Simple_repeat Simple_repeat 2 47 0 759 199 23 0 chr11 10128327 10128458 -140655095 + AluJo SINE Alu 1 134 -178 30 27 0 0 chr11 10128541 10128578 -140654975 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr11 10128618 10128639 -140654914 + AT_rich Low_complexity Low_complexity 1 21 0 2094 120 29 13 chr11 10128672 10128980 -140654573 - AluSq SINE Alu 0 313 1 1676 189 0 17 chr11 10129182 10129483 -140654070 - AluJo SINE Alu -16 296 1 2121 137 0 0 chr11 10129491 10129798 -140653755 - AluSx SINE Alu -5 307 1 1932 147 0 23 chr11 10129802 10130102 -140653451 - AluSx SINE Alu -19 293 1 1015 142 73 0 chr11 10130183 10130387 -140653166 - L1MA8 LINE L1 -3 6288 6070 1378 163 38 0 chr11 10130461 10130725 -140652828 + L1MB7 LINE L1 5895 6168 -16 1681 163 4 8 chr11 10130970 10131221 -140652332 + AluJo SINE Alu 1 250 -62 324 316 175 12 chr11 10131912 10132083 -140651470 - MIR SINE MIR -58 204 6 288 102 20 0 chr11 10132569 10132618 -140650935 - AluSp/q SINE Alu -7 296 247 1742 165 16 44 chr11 10133103 10133419 -140650134 - AluJb SINE Alu -5 307 1 1931 160 51 33 chr11 10133609 10134059 -140649494 - L1MB7 LINE L1 0 6184 5727 701 324 53 83 chr11 10134063 10134474 -140649079 + L2 LINE L2 2874 3272 0 458 224 0 0 chr11 10134707 10134814 -140648739 - L1MB7 LINE L1 -19 6165 6059 1898 139 13 17 chr11 10135068 10135391 -140648162 - AluSx SINE Alu 0 312 1 181 280 140 47 chr11 10135449 10135556 -140647997 + L2 LINE L2 3183 3299 -14 22 56 0 0 chr11 10136478 10136514 -140647039 + AT_rich Low_complexity Low_complexity 1 36 0 255 203 47 0 chr11 10136742 10136806 -140646747 - L1MB7 LINE L1 -237 5941 5875 1723 168 28 31 chr11 10137227 10137606 -140645947 - L1MB1 LINE L1 -9 6159 5780 2290 119 0 0 chr11 10137606 10137918 -140645635 - AluSx SINE Alu 0 312 1 1723 168 28 31 chr11 10137918 10137930 -140645623 - L1MB1 LINE L1 -388 5780 5769 698 139 8 23 chr11 10137949 10138078 -140645475 - L1PB2 LINE L1 0 6151 6025 2714 141 4 6 chr11 10138079 10138563 -140644990 - L1MB1 LINE L1 -388 5780 5298 192 40 0 0 chr11 10138791 10138816 -140644737 + (CTG)n Simple_repeat Simple_repeat 2 26 0 1642 168 3 52 chr11 10139115 10139443 -140644110 - AluJo SINE Alu 0 312 1 313 117 39 0 chr11 10139454 10139531 -140644022 + (TTTA)n Simple_repeat Simple_repeat 1 80 0 23 0 0 0 chr11 10139538 10139561 -140643992 + AT_rich Low_complexity Low_complexity 1 23 0 670 205 0 0 chr11 10139561 10139673 -140643880 - FLAM_C SINE Alu -25 118 7 198 91 0 0 chr11 10139851 10139884 -140643669 + (TCTG)n Simple_repeat Simple_repeat 2 34 0 328 238 95 106 chr11 10139884 10140073 -140643480 + LTR67 LTR ERVL 32 218 -339 318 219 15 133 chr11 10140132 10140328 -140643225 + LTR67 LTR ERVL 363 535 -22 362 347 55 36 chr11 10140370 10140589 -140642964 + L2 LINE L2 2869 3091 -181 207 383 74 0 chr11 10140795 10140876 -140642677 + L2 LINE L2 3125 3211 -61 581 178 0 0 chr11 10140897 10140987 -140642566 + FLAM_C SINE Alu 29 118 -25 29 60 0 0 chr11 10140987 10141037 -140642516 + AT_rich Low_complexity Low_complexity 1 50 0 1744 88 161 4 chr11 10141193 10141454 -140642099 - AluSx SINE Alu 0 302 1 437 262 117 0 chr11 10142758 10142903 -140640650 + MIR SINE MIR 86 247 -15 430 299 7 0 chr11 10142916 10143060 -140640493 - L1MB7 LINE L1 -426 5695 5551 1064 137 37 0 chr11 10143265 10143426 -140640127 - AluSq SINE Alu -8 305 139 1825 153 13 32 chr11 10143428 10143736 -140639817 - AluJb SINE Alu -10 302 1 513 283 127 67 chr11 10143738 10143947 -140639606 - LTR67 LTR ERVL -60 497 302 2348 102 76 15 chr11 10143947 10144290 -140639263 - THE1B LTR MaLR 0 364 1 513 283 127 67 chr11 10144290 10144546 -140639007 - LTR67 LTR ERVL -255 302 4 928 245 69 4 chr11 10144859 10145092 -140638461 + MIR SINE MIR 1 248 -14 599 334 63 12 chr11 10145259 10145591 -140637962 - L2 LINE L2 -1108 2206 1858 1778 135 0 80 chr11 10145809 10146135 -140637418 + AluJb SINE Alu 1 300 -12 22 0 0 0 chr11 10147063 10147085 -140636468 + AT_rich Low_complexity Low_complexity 1 22 0 1832 147 45 0 chr11 10147282 10147568 -140635985 + AluJb SINE Alu 1 299 -13 1402 154 123 11 chr11 10147580 10147840 -140635713 + AluSg SINE Alu 1 289 -21 1055 114 81 0 chr11 10147856 10148005 -140635548 + AluSg/x SINE Alu 132 292 -18 21 0 0 0 chr11 10148388 10148409 -140635144 + AT_rich Low_complexity Low_complexity 1 21 0 258 302 12 36 chr11 10149237 10149270 -140634283 + T-rich Low_complexity Low_complexity 4 36 -206 2222 119 0 0 chr11 10149270 10149572 -140633981 - AluSx SINE Alu -9 303 2 258 302 12 36 chr11 10149572 10149700 -140633853 + T-rich Low_complexity Low_complexity 36 242 0 1734 194 16 10 chr11 10149915 10150225 -140633328 - AluJo SINE Alu 0 312 1 460 266 94 0 chr11 10150568 10150696 -140632857 - MIR SINE MIR -6 256 117 403 266 165 19 chr11 10150910 10151068 -140632485 - MER5A DNA MER1_type 0 189 9 735 211 108 5 chr11 10151223 10151417 -140632136 + MER58C DNA MER1_type 2 215 0 279 274 142 25 chr11 10151457 10151661 -140631892 - L2 LINE L2 -464 2850 2623 270 190 138 0 chr11 10151863 10151921 -140631632 + MER112 DNA MER1_type 178 243 -17 186 303 40 50 chr11 10152021 10152120 -140631433 - L2 LINE L2 -887 2427 2330 2057 129 10 10 chr11 10152221 10152531 -140631022 - AluSx SINE Alu -2 310 1 1821 121 86 0 chr11 10153455 10153735 -140629818 - AluSx SINE Alu -8 304 1 22 0 0 0 chr11 10153837 10153859 -140629694 + AT_rich Low_complexity Low_complexity 1 22 0 720 151 8 0 chr11 10153859 10153978 -140629575 + AluSq/x SINE Alu 1 120 -193 360 0 0 0 chr11 10153989 10154029 -140629524 + (TA)n Simple_repeat Simple_repeat 2 41 0 2204 120 0 3 chr11 10154029 10154329 -140629224 - AluSc SINE Alu -10 299 1 289 228 65 16 chr11 10154492 10154615 -140628938 + L1ME4a LINE L1 5989 6117 -4 7698 61 10 6 chr11 10154846 10156206 -140627347 - L1P2 LINE L1 -529 5625 4264 625 183 7 10 chr11 10156316 10156451 -140627102 - LTR27 LTR ERV1 -213 423 299 926 147 11 17 chr11 10156518 10156695 -140626858 - LTR28 LTR ERV1 -844 176 1 202 354 0 0 chr11 10156719 10156784 -140626769 - L2 LINE L2 -940 2374 2310 581 306 83 20 chr11 10156799 10156876 -140626677 + L2 LINE L2 2084 2155 -1159 2218 158 85 5 chr11 10156876 10157263 -140626290 + MER47B DNA MER2_type 1 418 0 581 306 83 20 chr11 10157263 10157437 -140626116 + L2 LINE L2 2155 2351 -963 1620 119 0 4 chr11 10157767 10157994 -140625559 - AluSc SINE Alu -83 226 1 346 204 64 14 chr11 10158142 10158296 -140625257 + L1ME4a LINE L1 1196 6118 0 2142 97 14 10 chr11 10159247 10159535 -140624018 + AluSg SINE Alu 1 289 -21 892 123 0 0 chr11 10159535 10159652 -140623901 - AluJo/FLAM SINE Alu -183 129 13 679 206 85 11 chr11 10159730 10159919 -140623634 - L1MC5 LINE L1 -68 7893 7691 21 82 0 0 chr11 10161416 10161465 -140622088 + AT_rich Low_complexity Low_complexity 1 49 0 2091 107 24 7 chr11 10161651 10161942 -140621611 - AluSg SINE Alu -14 296 1 1188 142 9 0 chr11 10162162 10162373 -140621180 - L1PA16 LINE L1 -153 6013 5801 300 207 187 20 chr11 10162534 10162684 -140620869 + MIR SINE MIR 14 188 -74 318 277 0 0 chr11 10162729 10162812 -140620741 + L1MC/D LINE L1 5725 5807 -2001 25 0 0 0 chr11 10163220 10163245 -140620308 + AT_rich Low_complexity Low_complexity 1 25 0 366 210 59 183 chr11 10163483 10163702 -140619851 - MIR3 SINE MIR -13 195 4 28 0 0 0 chr11 10165065 10165093 -140618460 + AT_rich Low_complexity Low_complexity 1 28 0 1231 119 0 97 chr11 10165195 10165422 -140618131 - MER46A DNA MER2_type 0 236 32 773 162 14 0 chr11 10165440 10165588 -140617965 - L1MD3 LINE L1 -1999 5996 5847 1533 161 61 7 chr11 10165884 10166163 -140617390 - AluJo SINE Alu -18 294 1 23 101 0 0 chr11 10166263 10166342 -140617211 + AT_rich Low_complexity Low_complexity 1 79 0 1091 253 30 33 chr11 10166429 10166796 -140616757 - L1MC4a LINE L1 -1833 5975 5610 4065 183 51 20 chr11 10166955 10168171 -140615382 - L1M4c LINE L1 -4831 2024 872 654 119 50 10 chr11 10168177 10168278 -140615275 + FLAM_C SINE Alu 9 113 -30 287 193 0 0 chr11 10168308 10168365 -140615188 - L1M4c LINE L1 -5978 881 825 * 1746 216 48 20 chr11 10168364 10168763 -140614790 - L1M4c LINE L1 -6439 420 11 2159 90 0 0 chr11 10168854 10169156 -140614397 + AluSc SINE Alu 1 302 0 298 297 143 0 chr11 10169707 10169798 -140613755 - L2 LINE L2 -1 3271 3168 1739 135 50 30 chr11 10169823 10170120 -140613433 + AluJo SINE Alu 1 303 -9 551 211 92 0 chr11 10170149 10170258 -140613295 - MER94 DNA DNA 0 134 16 25 75 0 0 chr11 10172530 10172583 -140610970 + AT_rich Low_complexity Low_complexity 1 53 0 188 198 62 123 chr11 10173009 10173090 -140610463 - MER5A DNA MER1_type 0 189 114 934 185 121 24 chr11 10173094 10173343 -140610210 + AluSg SINE Alu 35 307 -3 28 48 0 0 chr11 10173493 10173535 -140610018 + AT_rich Low_complexity Low_complexity 1 42 0 1970 110 10 14 chr11 10173583 10173874 -140609679 - AluSc SINE Alu -19 290 1 7580 25 0 0 chr11 10174141 10175014 -140608539 - L1PA3 LINE L1 -3 6152 5280 328 264 365 6 chr11 10175302 10175469 -140608084 + MIR SINE MIR 16 242 -20 585 254 258 10 chr11 10175492 10175787 -140607766 + L3 LINE CR1 685 1052 -525 407 279 39 16 chr11 10175796 10175925 -140607628 - MIR SINE MIR -21 241 110 501 293 86 82 chr11 10175946 10176495 -140607058 - LTR67 LTR ERVL -4 553 3 289 279 89 0 chr11 10176543 10176622 -140606931 + L2 LINE L2 3228 3313 0 948 269 142 24 chr11 10176624 10177047 -140606506 + L3 LINE CR1 1042 1514 -63 317 251 280 23 chr11 10177298 10177473 -140606080 + MIR SINE MIR 30 249 -13 631 279 71 5 chr11 10177588 10177785 -140605768 + MIR SINE MIR 53 262 0 191 303 61 15 chr11 10177857 10177923 -140605630 + MIR3 SINE MIR 109 177 -31 815 207 52 123 chr11 10178374 10178683 -140604870 - LTR41 LTR ERVL -17 756 470 659 186 124 12 chr11 10178770 10178931 -140604622 - LTR41 LTR ERVL -594 179 1 754 204 137 31 chr11 10178964 10179190 -140604363 + MIR SINE MIR 11 260 -2 2312 73 0 19 chr11 10179377 10179694 -140603859 - AluY SINE Alu 0 311 1 2119 84 0 11 chr11 10180240 10180554 -140602999 + AluSx SINE Alu 1 311 0 21 36 0 0 chr11 10183067 10183095 -140600458 + AT_rich Low_complexity Low_complexity 1 28 0 2053 47 0 4 chr11 10183635 10183891 -140599662 + AluY SINE Alu 47 301 -10 1352 133 38 0 chr11 10183908 10184119 -140599434 + MER20 DNA MER1_type 1 219 0 1391 227 174 10 chr11 10184788 10185272 -140598281 + L1ME3 LINE L1 5580 6142 -20 1823 118 35 0 chr11 10185312 10185600 -140597953 - AluSx SINE Alu -14 298 1 207 286 91 13 chr11 10186703 10186780 -140596773 + MIR SINE MIR 20 102 -160 282 93 0 0 chr11 10188026 10188069 -140595484 + MADE1 DNA Mariner 38 80 0 351 241 120 8 chr11 10188659 10188792 -140594761 - MIR SINE MIR -68 194 47 250 132 0 57 chr11 10190257 10190310 -140593243 + L2 LINE L2 3223 3272 0 427 358 53 24 chr11 10190910 10191156 -140592397 + L2 LINE L2 2578 2830 -484 296 266 22 43 chr11 10191179 10191305 -140592248 + (TGGA)n Simple_repeat Simple_repeat 1 123 -57 2261 97 10 0 chr11 10191305 10191613 -140591940 + AluSq SINE Alu 1 311 -2 296 266 22 43 chr11 10191613 10191670 -140591883 + (TGGA)n Simple_repeat Simple_repeat 123 180 0 1931 240 48 26 chr11 10191961 10192771 -140590782 - L2 LINE L2 0 3313 2482 264 219 25 50 chr11 10193199 10193318 -140590235 + (TA)n Simple_repeat Simple_repeat 1 116 0 915 221 13 24 chr11 10193620 10193843 -140589710 + MLT1A1 LTR MaLR 173 365 0 909 239 6 0 chr11 10193970 10194137 -140589416 - MER5A DNA MER1_type -21 168 1 1382 323 113 23 chr11 10194609 10195603 -140587950 + L2 LINE L2 1606 2688 -626 205 219 62 16 chr11 10196158 10196222 -140587331 - MIR3 SINE MIR -33 175 109 412 264 33 30 chr11 10196667 10196813 -140586740 + MIR SINE MIR 1 149 -59 236 258 18 126 chr11 10197293 10197460 -140586093 + L2 LINE L2 2966 3114 -158 2942 67 14 3 chr11 10197898 10198269 -140585284 + THE1C LTR MaLR 1 375 0 2110 147 68 66 chr11 10198622 10199120 -140584433 - MLT1D LTR MaLR -2 503 5 239 259 36 9 chr11 10199255 10199367 -140584186 + LTR16B LTR ERVL 291 405 -59 940 284 46 18 chr11 10199374 10199656 -140583897 + ERVL LTR ERVL 1739 2028 -2968 840 314 20 4 chr11 10199696 10199951 -140583602 + ERVL LTR ERVL 4254 4512 -1252 303 311 42 36 chr11 10199976 10200169 -140583384 + ERVL LTR ERVL 4935 5128 -636 351 308 23 0 chr11 10200281 10200414 -140583139 + ERVL LTR ERVL 5191 5326 -328 2203 218 78 53 chr11 10200559 10200609 -140582944 - MER65A-int LTR ERV1 -3972 899 852 1781 159 7 0 chr11 10200609 10200904 -140582649 - AluSx SINE Alu -8 304 8 2203 218 78 53 chr11 10200904 10200955 -140582598 - MER65A-int LTR ERV1 -4019 852 804 1893 139 0 0 chr11 10200955 10201281 -140582272 - AluJb SINE Alu 0 326 1 2203 218 78 53 chr11 10201281 10201675 -140581878 - MER65A-int LTR ERV1 -4067 804 376 3793 41 5 2 chr11 10201675 10202116 -140581437 - MLT2A1 LTR ERVL -2 442 1 2203 218 78 53 chr11 10202116 10202318 -140581235 - MER65A-int LTR ERV1 -4495 376 181 2883 152 46 67 chr11 10202318 10202931 -140580622 + LTR9 LTR ERV1 1 600 -12 288 287 16 25 chr11 10202958 10203080 -140580473 - MER65A-int LTR ERV1 -4703 168 48 2712 111 27 36 chr11 10203124 10203182 -140580371 - MER65A LTR ERV1 0 445 388 2353 122 71 29 chr11 10203182 10203222 -140580331 - MSTA LTR MaLR 0 428 391 2840 6 0 0 chr11 10203222 10203538 -140580015 + AluYb8 SINE Alu 1 316 -2 2353 122 71 29 chr11 10203538 10203550 -140580003 - MSTA LTR MaLR -37 391 381 1777 160 24 0 chr11 10203550 10203843 -140579710 + AluJo SINE Alu 2 301 -11 2353 122 71 29 chr11 10203843 10204200 -140579353 - MSTA LTR MaLR -47 381 1 2712 111 27 36 chr11 10204200 10204549 -140579004 - MER65A LTR ERV1 -57 388 40 252 59 0 0 chr11 10204549 10204583 -140578970 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2712 111 27 36 chr11 10204583 10204623 -140578930 - MER65A LTR ERV1 -405 40 1 1309 267 55 0 chr11 10204630 10204960 -140578593 + LTR16B LTR ERVL 9 356 -108 450 161 354 15 chr11 10205055 10205185 -140578368 + MER5A DNA MER1_type 16 189 0 331 301 116 7 chr11 10205278 10205424 -140578129 - MIR3 SINE MIR -43 165 4 361 291 0 0 chr11 10205489 10205575 -140577978 + MER21B LTR ERV1 1 86 -777 1267 215 109 15 chr11 10205647 10206205 -140577348 + MER21B LTR ERV1 98 754 -109 561 172 203 44 chr11 10206258 10206485 -140577068 + MER33 DNA MER1_type 62 324 0 4606 147 62 25 chr11 10206930 10207808 -140575745 - MER4D LTR ERV1 0 872 1 2084 55 0 36 chr11 10208264 10208539 -140575014 + AluY SINE Alu 38 302 -9 21 0 0 0 chr11 10209379 10209400 -140574153 + AT_rich Low_complexity Low_complexity 1 21 0 1837 133 30 10 chr11 10212083 10212383 -140571170 + AluJb SINE Alu 1 306 -6 494 274 116 3 chr11 10212385 10212738 -140570815 + L1ME4a LINE L1 5203 5597 -743 2273 94 3 0 chr11 10212771 10213079 -140570474 + AluSx SINE Alu 1 309 -3 227 343 0 0 chr11 10214017 10214084 -140569469 + L2 LINE L2 3206 3272 0 268 204 148 37 chr11 10214845 10214953 -140568600 + L1ME4a LINE L1 6000 6119 -2 264 253 247 33 chr11 10215199 10215381 -140568172 + MIR SINE MIR 32 252 -10 2361 66 0 14 chr11 10215455 10215742 -140567811 - AluSc SINE Alu -23 286 4 2247 82 0 50 chr11 10217142 10217461 -140566092 - AluY SINE Alu -8 303 1 1903 264 107 35 chr11 10217959 10218606 -140564947 - MER115 DNA AcHobo 0 693 1 703 209 68 12 chr11 10220093 10220256 -140563297 + MER5B DNA MER1_type 1 172 -6 2108 104 7 0 chr11 10220711 10220999 -140562554 + AluSx SINE Alu 6 295 -17 192 143 89 54 chr11 10221242 10221298 -140562255 + MIR3 SINE MIR 143 200 -8 1725 137 0 83 chr11 10221322 10221635 -140561918 - AluJb SINE Alu -25 287 1 394 259 118 22 chr11 10221716 10221851 -140561702 - MIR SINE MIR -30 232 85 941 170 0 82 chr11 10221893 10221940 -140561613 - MER5B DNA MER1_type 0 178 129 2118 140 0 3 chr11 10221940 10222248 -140561305 - AluSx SINE Alu -5 307 1 941 170 0 82 chr11 10222248 10222394 -140561159 - MER5B DNA MER1_type -49 129 1 1043 179 10 0 chr11 10222544 10222762 -140560791 + AluJb SINE Alu 87 306 0 1956 124 32 38 chr11 10222950 10223264 -140560289 + AluSx SINE Alu 1 312 0 597 249 24 83 chr11 10223789 10224042 -140559511 - MIR SINE MIR -8 254 17 503 281 59 59 chr11 10224668 10224924 -140558629 - MIR SINE MIR -6 256 1 1902 112 11 21 chr11 10226249 10226534 -140557019 + AluJo SINE Alu 1 282 -30 258 32 0 0 chr11 10226534 10226565 -140556988 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 2493 69 0 19 chr11 10227220 10227537 -140556016 + AluY SINE Alu 1 311 0 809 185 94 22 chr11 10228395 10228511 -140555042 - L1MC/D LINE L1 -743 5403 5297 1865 179 3 0 chr11 10228511 10228807 -140554746 + AluSx SINE Alu 1 297 -15 809 185 94 22 chr11 10228807 10228946 -140554607 - L1MC/D LINE L1 -849 5297 5167 27 0 0 0 chr11 10228946 10228973 -140554580 + AT_rich Low_complexity Low_complexity 1 27 0 2429 59 0 3 chr11 10228973 10229262 -140554291 - AluY SINE Alu -23 288 1 831 158 24 0 chr11 10229272 10229399 -140554154 - FLAM_C SINE Alu -1 132 3 644 209 44 0 chr11 10229406 10229564 -140553989 - L1MC/D LINE L1 -2811 3335 3171 30 27 0 0 chr11 10231560 10231597 -140551956 + AT_rich Low_complexity Low_complexity 1 37 0 625 281 98 72 chr11 10232301 10232689 -140550864 + HAL1 LINE L1 73 482 -2025 183 42 0 0 chr11 10232689 10232713 -140550840 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 625 281 98 72 chr11 10232713 10232907 -140550646 + HAL1 LINE L1 482 670 -1837 1777 233 24 9 chr11 10232996 10233421 -140550132 - L1ME1 LINE L1 -5 6161 5731 1108 201 97 37 chr11 10233422 10233517 -140550036 - L1MD2 LINE L1 -315 6044 5956 1967 164 0 3 chr11 10233517 10233815 -140549738 + AluSx SINE Alu 1 297 -15 1108 201 97 37 chr11 10233815 10234018 -140549535 - L1MD2 LINE L1 -403 5956 5728 2108 101 3 7 chr11 10234178 10234475 -140549078 - AluSc SINE Alu -13 296 1 232 337 50 40 chr11 10234603 10234704 -140548849 - L2 LINE L2 -48 3224 3123 349 191 24 36 chr11 10234798 10234882 -140548671 + MIR SINE MIR 180 262 0 858 193 99 9 chr11 10235248 10235471 -140548082 + L1MB8 LINE L1 5931 6173 -5 1263 124 0 0 chr11 10235895 10236086 -140547467 - L1PA16 LINE L1 -194 5957 5767 22 35 0 0 chr11 10237412 10237441 -140546112 + AT_rich Low_complexity Low_complexity 1 29 0 776 206 0 0 chr11 10237740 10237871 -140545682 + AluSq/x SINE Alu 3 133 -180 2171 115 3 3 chr11 10238099 10238394 -140545159 - AluSx SINE Alu -12 300 6 528 194 0 40 chr11 10238416 10238540 -140545013 + L1MB7 LINE L1 6051 6169 -15 2106 133 3 3 chr11 10238548 10238849 -140544704 + AluJb SINE Alu 1 301 -11 22 0 0 0 chr11 10239007 10239029 -140544524 + AT_rich Low_complexity Low_complexity 1 22 0 5033 95 37 1 chr11 10239236 10239912 -140543641 + L1PA15 LINE L1 5463 6162 -3 719 141 0 0 chr11 10240389 10240488 -140543065 + AluJ/FLAM SINE Alu 2 100 -212 262 225 142 33 chr11 10241763 10241883 -140541670 - L1ME4a LINE L1 -1 6120 5988 2151 102 10 7 chr11 10241885 10242178 -140541375 - AluSc SINE Alu -15 294 1 2089 134 0 7 chr11 10242212 10242518 -140541035 + AluSx SINE Alu 1 304 -8 630 158 17 25 chr11 10242845 10242965 -140540588 + L1MB2 LINE L1 6038 6156 -15 255 196 0 20 chr11 10242973 10243024 -140540529 + L1ME LINE L1 5615 5664 -457 1677 127 13 71 chr11 10243713 10244021 -140539532 + AluSc SINE Alu 3 292 -17 211 300 0 17 chr11 10244041 10244101 -140539452 + GA-rich Low_complexity Low_complexity 3 61 0 228 246 0 0 chr11 10245182 10245243 -140538310 + (TA)n Simple_repeat Simple_repeat 1 61 0 1286 179 71 40 chr11 10246179 10246476 -140537077 + AluJb SINE Alu 5 310 -2 2407 87 3 0 chr11 10246498 10246797 -140536756 - AluSp SINE Alu -13 300 1 2405 76 0 0 chr11 10247284 10247574 -140535979 - AluSp SINE Alu -23 290 1 21 0 0 0 chr11 10248185 10248206 -140535347 + AT_rich Low_complexity Low_complexity 1 21 0 394 335 158 28 chr11 10249131 10249327 -140534226 + L2 LINE L2 2942 3188 -84 2430 96 207 5 chr11 10249327 10249714 -140533839 + MER4C LTR ERV1 1 465 0 394 335 158 28 chr11 10249714 10249801 -140533752 + L2 LINE L2 3188 3262 -10 492 211 48 80 chr11 10250171 10250463 -140533090 - MER112 DNA MER1_type -8 252 1 518 276 99 5 chr11 10250600 10250792 -140532761 - MIR SINE MIR 0 262 53 2673 33 0 0 chr11 10250811 10251112 -140532441 - AluY SINE Alu -10 301 1 204 309 29 15 chr11 10251338 10251406 -140532147 + L2 LINE L2 3187 3255 -17 323 221 15 0 chr11 10251438 10251506 -140532047 + MIR SINE MIR 54 122 -86 221 269 0 30 chr11 10252017 10252084 -140531469 + GA-rich Low_complexity Low_complexity 2 66 0 2392 89 0 19 chr11 10252830 10253145 -140530408 + AluSc SINE Alu 1 309 0 2845 110 106 9 chr11 10253610 10254036 -140529517 + MLT1C LTR MaLR 1 467 0 820 311 196 36 chr11 10254394 10255257 -140528296 + L3 LINE CR1 480 1480 -97 332 164 15 0 chr11 10255258 10255325 -140528228 + (TG)n Simple_repeat Simple_repeat 2 69 0 1941 83 0 149 chr11 10255343 10255693 -140527860 - AluSq SINE Alu -15 298 1 1791 148 16 26 chr11 10255803 10256107 -140527446 + AluJo SINE Alu 1 301 -11 899 125 0 0 chr11 10257563 10257691 -140525862 + FLAM_C SINE Alu 16 143 0 294 29 0 0 chr11 10258108 10258143 -140525410 + (TCTA)n Simple_repeat Simple_repeat 4 38 0 411 143 12 168 chr11 10258846 10259007 -140524546 - MER104 DNA Tc2 -3 177 42 2468 90 0 0 chr11 10259013 10259325 -140524228 + AluSx SINE Alu 1 312 0 1887 153 7 7 chr11 10259554 10259854 -140523699 - AluJb SINE Alu -12 300 1 261 264 11 22 chr11 10260988 10261079 -140522474 + GA-rich Low_complexity Low_complexity 5 94 0 891 161 0 0 chr11 10261166 10261296 -140522257 - FLAM_C SINE Alu -3 130 1 2502 64 0 16 chr11 10261964 10262275 -140521278 - AluY SINE Alu -5 306 1 595 104 26 149 chr11 10262287 10262330 -140521223 - L1MB4 LINE L1 -6 6174 6127 2340 75 17 0 chr11 10262330 10262624 -140520929 - AluSp SINE Alu -14 299 1 595 104 26 149 chr11 10262624 10262635 -140520918 - L1MB4 LINE L1 -53 6127 6116 2203 94 3 0 chr11 10262635 10262921 -140520632 - AluSp SINE Alu 0 313 27 595 104 26 149 chr11 10262921 10263019 -140520534 - L1MB4 LINE L1 -64 6116 6040 1613 224 52 72 chr11 10263791 10263893 -140519660 - L1ME3A LINE L1 -99 6140 6037 1726 145 10 52 chr11 10263893 10264203 -140519350 + AluJo SINE Alu 2 298 -14 1613 224 52 72 chr11 10264203 10264639 -140518914 - L1ME3A LINE L1 -202 6037 5613 1498 246 108 62 chr11 10264638 10265745 -140517808 - L1ME3A LINE L1 -945 5270 4113 * 360 286 0 0 chr11 10266006 10266104 -140517449 - L1ME3A LINE L1 -2262 3953 3856 589 258 52 34 chr11 10266158 10266302 -140517251 - L1ME3A LINE L1 -3921 2475 2335 2264 93 0 0 chr11 10266302 10266591 -140516962 - AluSc SINE Alu -20 289 1 589 258 52 34 chr11 10266591 10266795 -140516758 - L1ME3A LINE L1 -4061 2335 2121 578 220 64 7 chr11 10267567 10267708 -140515845 + MER58B DNA MER1_type 191 339 -2 2185 88 6 50 chr11 10268318 10268635 -140514918 + AluSg SINE Alu 1 303 -7 21 0 0 0 chr11 10269468 10269489 -140514064 + AT_rich Low_complexity Low_complexity 1 21 0 2109 120 3 10 chr11 10269895 10270196 -140513357 - AluSx SINE Alu -13 299 1 22 0 0 0 chr11 10272155 10272177 -140511376 + AT_rich Low_complexity Low_complexity 1 22 0 416 102 17 0 chr11 10272179 10272238 -140511315 - U7 snRNA snRNA -2 61 2 949 209 51 105 chr11 10272922 10273112 -140510441 + L1MC4 LINE L1 7620 7819 -223 1282 69 0 17 chr11 10273112 10273287 -140510266 + L1PA8 LINE L1 6001 6172 0 949 209 51 105 chr11 10273287 10273526 -140510027 + L1MC4 LINE L1 7819 8026 -16 28 0 0 0 chr11 10274235 10274263 -140509290 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr11 10276076 10276097 -140507456 + AT_rich Low_complexity Low_complexity 1 21 0 460 236 73 73 chr11 10277422 10277600 -140505953 - MER5B DNA MER1_type 0 178 1 297 254 70 0 chr11 10277616 10277687 -140505866 - MIR3 SINE MIR -52 156 81 282 56 0 0 chr11 10278595 10278631 -140504922 + (ATTG)n Simple_repeat Simple_repeat 2 37 0 1843 158 0 7 chr11 10278631 10278909 -140504644 - AluJo SINE Alu -26 286 11 362 327 12 48 chr11 10279131 10279215 -140504338 + L1MC4a LINE L1 5777 5854 -1954 2349 102 0 6 chr11 10279215 10279529 -140504024 + AluSx SINE Alu 1 312 0 362 327 12 48 chr11 10279529 10279612 -140503941 + L1MC4a LINE L1 5854 5938 -1870 1798 150 3 18 chr11 10280126 10280438 -140503115 - AluJb SINE Alu 0 308 1 387 272 35 26 chr11 10280524 10280638 -140502915 - MER5A DNA MER1_type -30 159 45 300 324 42 35 chr11 10280525 10280667 -140502886 + MER5A DNA MER1_type 43 185 -4 * 2543 153 84 19 chr11 10281201 10281769 -140501784 + L1MB4 LINE L1 5575 6179 -1 1648 149 38 60 chr11 10282938 10283254 -140500299 - AluJo SINE Alu -3 309 1 834 248 220 28 chr11 10283939 10284438 -140499115 - L2 LINE L2 -2 3311 2716 2629 43 0 0 chr11 10285148 10285448 -140498105 - AluY SINE Alu -11 300 1 351 294 203 0 chr11 10285879 10286032 -140497521 - MIR SINE MIR -8 254 71 27 49 0 0 chr11 10286091 10286132 -140497421 + AT_rich Low_complexity Low_complexity 1 41 0 1270 109 5 65 chr11 10288623 10288824 -140494729 - AluJb SINE Alu -11 301 113 231 108 0 0 chr11 10288827 10288864 -140494689 + Alu SINE Alu 200 236 -67 875 145 0 0 chr11 10288868 10288992 -140494561 - AluJb SINE Alu -188 124 1 1134 180 88 0 chr11 10289379 10289565 -140493988 - MER46A DNA MER2_type -2495 236 27 1517 173 40 40 chr11 10289565 10289743 -140493810 - AluJo SINE Alu -12 300 120 2365 109 0 0 chr11 10289743 10290045 -140493508 + AluSx SINE Alu 1 302 -10 1517 173 40 40 chr11 10290045 10290166 -140493387 - AluJo SINE Alu -191 121 1 1134 180 88 0 chr11 10290166 10290196 -140493357 - MER46A DNA MER2_type -2704 27 1 39 38 0 0 chr11 10291083 10291136 -140492417 + AT_rich Low_complexity Low_complexity 1 53 0 1876 163 0 0 chr11 10292756 10293045 -140490508 - AluJb SINE Alu -21 291 3 1264 165 5 27 chr11 10293268 10293492 -140490061 - AluJb SINE Alu -9 303 85 24 32 0 0 chr11 10293609 10293640 -140489913 + AT_rich Low_complexity Low_complexity 1 31 0 203 284 126 63 chr11 10293640 10293767 -140489786 - MIR SINE MIR -4 258 124 1587 193 33 3 chr11 10293770 10294071 -140489482 + AluSx SINE Alu 3 312 0 478 171 51 68 chr11 10294096 10294213 -140489340 - MIR SINE MIR -135 127 13 296 238 77 0 chr11 10294219 10294347 -140489206 - L1ME LINE L1 -345 5817 5682 3925 148 24 6 chr11 10294579 10295384 -140488169 + L1MA4 LINE L1 4634 5443 -743 1819 55 47 8 chr11 10295384 10295637 -140487916 + L1MA2 LINE L1 6037 6301 -3 4802 123 56 2 chr11 10295683 10296506 -140487047 + L1MA4 LINE L1 5428 6294 -6 247 67 67 0 chr11 10296506 10296551 -140487002 - L1MC5 LINE L1 -311 7650 7603 2043 55 3 86 chr11 10296575 10296865 -140486688 + AluY SINE Alu 5 270 -41 189 74 0 0 chr11 10296870 10296897 -140486656 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1595 209 72 71 chr11 10296962 10297613 -140485940 - L1MC5 LINE L1 -392 7569 6918 1662 113 0 0 chr11 10297676 10297898 -140485655 - AluSg/x SINE Alu -11 301 80 8795 136 12 7 chr11 10297898 10299052 -140484501 + L1P LINE L1 3828 4992 -1154 2303 95 0 0 chr11 10299052 10299348 -140484205 + AluSc SINE Alu 1 296 -13 8795 136 12 7 chr11 10299348 10299727 -140483826 + L1P LINE L1 4992 5368 -778 880 97 28 28 chr11 10299859 10300003 -140483550 + AluY SINE Alu 168 311 0 7928 84 22 2 chr11 10300003 10301222 -140482331 + L1PA11 LINE L1 3294 4536 -1610 4587 111 44 0 chr11 10301522 10302210 -140481343 + L1PA11 LINE L1 5455 6172 -2 951 194 87 0 chr11 10302218 10302460 -140481093 + L1ME LINE L1 5310 5572 -594 546 181 0 0 chr11 10302471 10302554 -140480999 + AluS SINE Alu 1 83 -230 1946 88 0 0 chr11 10302720 10302969 -140480584 + AluY SINE Alu 59 307 -4 2283 76 0 33 chr11 10303504 10303808 -140479745 + AluSq SINE Alu 1 294 -19 180 419 73 0 chr11 10305677 10305801 -140477752 - MIR3 SINE MIR -24 184 52 229 388 54 0 chr11 10305932 10306061 -140477492 + L2 LINE L2 2917 3052 -220 880 187 113 127 chr11 10306085 10306464 -140477089 + MLT1A2 LTR MaLR 1 374 0 2140 124 3 0 chr11 10306480 10306778 -140476775 - AluSx SINE Alu -13 299 1 7108 53 11 0 chr11 10307140 10308259 -140475294 - L1PA6 LINE L1 -7 6147 5028 271 284 30 0 chr11 10309281 10309348 -140474205 + L2 LINE L2 3150 3218 -54 349 317 156 27 chr11 10309397 10309541 -140474012 - MIR SINE MIR -6 256 132 2195 139 3 0 chr11 10309541 10309851 -140473702 + AluSx SINE Alu 1 311 -1 349 317 156 27 chr11 10309851 10309930 -140473623 - MIR SINE MIR -130 132 4 365 330 60 0 chr11 10309997 10310212 -140473341 + Charlie8 DNA MER1_type 27 254 -2163 360 288 153 0 chr11 10310551 10310662 -140472891 + L3 LINE CR1 568 695 -882 1308 164 0 23 chr11 10311525 10311744 -140471809 + AluJo SINE Alu 87 300 -12 2174 92 41 3 chr11 10312265 10312559 -140470994 + AluSg SINE Alu 1 305 -5 1238 198 8 21 chr11 10312764 10313056 -140470497 - L1M1 LINE L1 -398 5785 5494 2444 62 10 0 chr11 10313128 10313420 -140470133 - AluSx SINE Alu -17 295 1 387 150 168 9 chr11 10313434 10313547 -140470006 - HsTC2 DNA Tc2 -49 1849 1 460 246 231 10 chr11 10314177 10314380 -140469173 + L2 LINE L2 3064 3311 -2 323 119 51 0 chr11 10314857 10314916 -140468637 - LTR50 LTR ERVL 0 795 734 2140 137 0 6 chr11 10314916 10315231 -140468322 - AluSq SINE Alu 0 313 1 1192 176 0 12 chr11 10315146 10315233 -140468320 - AluJo SINE Alu -92 220 134 1879 156 0 20 chr11 10315233 10315395 -140468158 - AluJb SINE Alu -17 295 140 2260 108 0 3 chr11 10315395 10315692 -140467861 - AluSc SINE Alu -12 297 2 1879 156 0 20 chr11 10315692 10315830 -140467723 - AluJb SINE Alu -172 140 1 1192 176 0 12 chr11 10315830 10315966 -140467587 - AluJo SINE Alu -178 134 1 616 156 50 124 chr11 10315968 10316186 -140467367 - LTR41 LTR ERVL -54 719 518 610 265 6 11 chr11 10316411 10316592 -140466961 - LTR41 LTR ERVL -586 187 8 22 56 0 0 chr11 10316832 10316868 -140466685 + AT_rich Low_complexity Low_complexity 1 36 0 190 250 96 67 chr11 10316874 10316978 -140466575 - L2 LINE L2 -12 3301 3195 2231 100 3 0 chr11 10317073 10317364 -140466189 + AluSp SINE Alu 3 294 -19 21 0 0 0 chr11 10317364 10317385 -140466168 + AT_rich Low_complexity Low_complexity 1 21 0 1816 115 0 0 chr11 10317565 10317809 -140465744 + AluSx SINE Alu 55 298 -14 2345 90 0 7 chr11 10318779 10319078 -140464475 - AluSq SINE Alu -16 297 1 1251 170 54 81 chr11 10319565 10319692 -140463861 - L1MB7 LINE L1 -17 6167 6038 255 61 0 0 chr11 10319692 10319725 -140463828 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 2153 141 0 3 chr11 10319725 10320038 -140463515 + AluSx SINE Alu 1 312 0 1251 170 54 81 chr11 10320038 10320244 -140463309 - L1MB7 LINE L1 -144 6040 5842 222 317 142 17 chr11 10321041 10321161 -140462392 - MIR SINE MIR -113 149 15 1635 186 7 29 chr11 10321407 10321714 -140461839 - AluJb SINE Alu -12 300 1 45 45 0 0 chr11 10322668 10322734 -140460819 + AT_rich Low_complexity Low_complexity 1 66 0 260 87 239 0 chr11 10323283 10323329 -140460224 + AluSc SINE Alu 232 288 -11 26 30 0 0 chr11 10324527 10324560 -140458993 + AT_rich Low_complexity Low_complexity 1 33 0 2311 123 0 0 chr11 10324653 10324961 -140458592 - AluSx SINE Alu -4 308 1 466 250 57 14 chr11 10325769 10325909 -140457644 + MER5B DNA MER1_type 4 149 -29 216 292 42 31 chr11 10326325 10326421 -140457132 - MIR SINE MIR 0 262 166 1989 131 3 7 chr11 10327067 10327357 -140456196 + AluSx SINE Alu 1 289 -23 205 167 0 0 chr11 10327722 10327758 -140455795 + A-rich Low_complexity Low_complexity 3 38 0 1680 191 7 33 chr11 10327890 10328194 -140455359 + AluJo SINE Alu 1 296 -16 27 0 0 0 chr11 10328708 10328735 -140454818 + AT_rich Low_complexity Low_complexity 1 27 0 1803 181 148 19 chr11 10328902 10329387 -140454166 + LTR10A LTR ERV1 1 548 -61 1709 159 41 21 chr11 10329419 10329709 -140453844 - AluJo SINE Alu -16 296 1 304 326 91 21 chr11 10329736 10329923 -140453630 + L1MEd LINE L1 2 201 -5918 1234 151 139 4 chr11 10330042 10330293 -140453260 + MER49 LTR ERV1 1 285 -638 * 2904 152 96 46 chr11 10330277 10330323 -140453230 + MER4D LTR ERV1 50 92 -811 1673 158 18 14 chr11 10330323 10330608 -140452945 - AluJb SINE Alu -10 302 17 2904 152 96 46 chr11 10330608 10331271 -140452282 + MER4D LTR ERV1 92 893 -10 224 331 0 22 chr11 10331615 10331718 -140451835 + A-rich Low_complexity Low_complexity 1 102 -31 2437 70 0 3 chr11 10331718 10332020 -140451533 + AluY SINE Alu 1 301 -10 224 331 0 22 chr11 10332020 10332052 -140451501 + A-rich Low_complexity Low_complexity 102 133 0 1998 218 110 28 chr11 10332108 10332778 -140450775 - MER50 LTR ERV1 0 734 10 1344 245 24 63 chr11 10332803 10333421 -140450132 + L1MEd LINE L1 2137 2726 -3403 1633 201 10 7 chr11 10333421 10333724 -140449829 + AluJo SINE Alu 1 304 -8 1344 245 24 63 chr11 10333724 10333804 -140449749 + L1MEd LINE L1 2726 2808 -3321 312 231 15 0 chr11 10333804 10333869 -140449684 + MIR SINE MIR 197 262 0 353 93 0 37 chr11 10334130 10334184 -140449369 - L2 LINE L2 -1 3312 3261 900 293 8 16 chr11 10336438 10336687 -140446866 - MIR SINE MIR 0 262 16 2536 37 0 7 chr11 10337022 10337316 -140446237 + AluY SINE Alu 1 292 -19 186 43 0 0 chr11 10337365 10337388 -140446165 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1645 167 48 11 chr11 10337396 10337666 -140445887 - AluJb SINE Alu -32 280 1 2568 47 3 0 chr11 10338068 10338366 -140445187 + AluY SINE Alu 1 299 -12 246 320 156 16 chr11 10338571 10338815 -140444738 + L1ME LINE L1 4869 5146 -1000 6390 121 27 64 chr11 10338817 10339444 -140444109 + Tigger3b DNA MER2_type 2 651 -2377 2092 111 6 44 chr11 10339444 10339760 -140443793 + AluSc SINE Alu 1 304 -5 2114 96 0 61 chr11 10339763 10340076 -140443477 + AluSg1 SINE Alu 1 294 -15 6390 121 27 64 chr11 10340076 10340598 -140442955 + Tigger3b DNA MER2_type 653 1193 -1835 1172 107 45 102 chr11 10340598 10340713 -140442840 - MER30 DNA MER1_type 0 230 110 1958 93 12 0 chr11 10340713 10340961 -140442592 + AluSg SINE Alu 1 251 -59 1172 107 45 102 chr11 10340961 10340983 -140442570 - MER30 DNA MER1_type -120 110 88 2206 100 10 3 chr11 10340983 10341273 -140442280 + AluSg SINE Alu 1 292 -18 1172 107 45 102 chr11 10341273 10341378 -140442175 - MER30 DNA MER1_type -142 88 1 6390 121 27 64 chr11 10341378 10341486 -140442067 + Tigger3b DNA MER2_type 1193 1217 -14 1028 233 82 35 chr11 10341577 10341684 -140441869 + L1ME LINE L1 5258 5358 -804 1714 174 41 0 chr11 10341684 10341977 -140441576 + AluJb SINE Alu 2 306 -6 1028 233 82 35 chr11 10341977 10342322 -140441231 + L1ME LINE L1 5358 5624 -538 369 0 0 0 chr11 10342322 10342363 -140441190 + (TAAAA)n Simple_repeat Simple_repeat 2 42 0 1028 233 82 35 chr11 10342363 10342393 -140441160 + L1ME LINE L1 5624 5651 -511 649 176 8 15 chr11 10342404 10342536 -140441017 + L1MCb LINE L1 579 923 -5373 717 148 0 25 chr11 10342561 10342683 -140440870 - FLAM_C SINE Alu -24 119 1 2214 124 8 3 chr11 10342683 10343046 -140440507 + L1MCb LINE L1 907 1271 -5293 1383 271 5 0 chr11 10343043 10343469 -140440084 + L1M4 LINE L1 4816 5246 -900 * 1315 166 0 4 chr11 10343469 10343698 -140439855 + L1MC1 LINE L1 6105 6332 -1 236 366 30 0 chr11 10343714 10343845 -140439708 - L2 LINE L2 -1190 2124 1990 2409 93 0 0 chr11 10343845 10344147 -140439406 + AluSc SINE Alu 1 302 -7 2216 128 0 3 chr11 10344459 10344764 -140438789 + AluSx SINE Alu 1 304 -8 1818 171 47 0 chr11 10345264 10345562 -140437991 - AluJo SINE Alu 0 312 1 26 30 0 0 chr11 10345899 10345932 -140437621 + AT_rich Low_complexity Low_complexity 1 33 0 2302 108 0 0 chr11 10346004 10346310 -140437243 - AluSx SINE Alu -6 306 1 333 260 125 82 chr11 10346446 10346654 -140436899 + L2 LINE L2 2237 2453 -861 531 259 89 57 chr11 10346917 10347026 -140436527 - HAL1 LINE L1 -2222 285 181 1852 152 3 59 chr11 10347026 10347349 -140436204 - AluJb SINE Alu -7 305 1 531 259 89 57 chr11 10347349 10347424 -140436129 - HAL1 LINE L1 -2326 181 110 2364 71 0 14 chr11 10347424 10347720 -140435833 - AluY SINE Alu -19 292 1 531 259 89 57 chr11 10347720 10347781 -140435772 - HAL1 LINE L1 -2397 110 31 504 139 0 0 chr11 10347931 10348017 -140435536 - AluSp SINE Alu 0 313 228 1906 165 68 34 chr11 10348017 10348459 -140435094 - LTR2B LTR ERV1 0 490 34 1716 108 4 4 chr11 10348481 10348712 -140434841 - AluSp SINE Alu -82 231 1 226 170 0 0 chr11 10348874 10348921 -140434632 + LTR66 LTR ERVL 394 440 -170 835 197 16 42 chr11 10349688 10349742 -140433811 + MER5A DNA MER1_type 2 56 -133 2287 101 3 0 chr11 10349742 10350050 -140433503 - AluSp SINE Alu -4 309 1 835 197 16 42 chr11 10350050 10350188 -140433365 + MER5A DNA MER1_type 56 189 0 1807 178 3 16 chr11 10350644 10350959 -140432594 + AluJo SINE Alu 1 311 -1 3879 140 18 2 chr11 10351377 10351978 -140431575 + LTR36 LTR ERV1 1 611 0 234 0 0 0 chr11 10351989 10352015 -140431538 + (CAA)n Simple_repeat Simple_repeat 2 27 0 832 192 31 104 chr11 10352788 10352809 -140430744 - MER33 DNA MER1_type -2261 324 303 2245 132 0 52 chr11 10352809 10353105 -140430448 + MER47A DNA MER2_type 1 311 -2012 2183 99 0 0 chr11 10353105 10353411 -140430142 - AluSx SINE Alu 0 306 1 1918 175 0 6 chr11 10353414 10353728 -140429825 - AluJb SINE Alu 0 312 1 2245 132 0 52 chr11 10353728 10353812 -140429741 + MER47A DNA MER2_type 313 366 0 832 192 31 104 chr11 10353812 10353980 -140429573 - MER33 DNA MER1_type -2282 303 165 1988 91 51 7 chr11 10353980 10354255 -140429298 - AluSp SINE Alu -26 287 1 832 192 31 104 chr11 10354255 10354382 -140429171 - MER33 DNA MER1_type -2420 165 30 569 254 47 22 chr11 10355131 10356134 -140427419 + L1ME1 LINE L1 2676 3786 -2360 430 235 130 9 chr11 10356134 10356249 -140427304 + FLAM_C SINE Alu 3 131 -2 569 254 47 22 chr11 10356249 10356511 -140427042 + L1ME1 LINE L1 3786 4040 -2106 1935 225 31 11 chr11 10356556 10357405 -140426148 + L1ME1 LINE L1 4906 5767 -399 7953 104 20 16 chr11 10357405 10358613 -140424940 + HSMAR1 DNA Mariner 11 1223 -64 1460 88 18 14 chr11 10358628 10358845 -140424708 + L1PA10 LINE L1 5950 6167 -1 537 79 0 0 chr11 10358861 10358937 -140424616 + HSMAR1 DNA Mariner 1212 1287 0 639 238 58 56 chr11 10358937 10359290 -140424263 + L1ME1 LINE L1 5781 6005 -161 34954 85 6 34 chr11 10359312 10362648 -140420905 + L1PA6 LINE L1 12 3196 -2958 694 129 26 0 chr11 10362648 10362764 -140420789 + AluY SINE Alu 168 286 -25 34954 85 6 34 chr11 10362764 10365571 -140417982 + L1PA6 LINE L1 3196 6082 -72 447 232 10 0 chr11 10365639 10365738 -140417815 - MSTD LTR MaLR -294 102 3 624 234 27 38 chr11 10365787 10365971 -140417582 + HAL1 LINE L1 1283 1464 -1043 403 290 88 55 chr11 10365991 10366689 -140416864 + L1ME LINE L1 3813 4541 -1605 2254 82 3 7 chr11 10366689 10366994 -140416559 + AluY SINE Alu 1 304 -7 403 290 88 55 chr11 10366994 10367077 -140416476 + L1ME LINE L1 4541 4620 -1526 243 352 6 6 chr11 10367490 10367666 -140415887 + L1ME LINE L1 4777 4952 -1194 2049 96 7 7 chr11 10368033 10368352 -140415201 - AluSg SINE Alu 0 319 1 360 259 24 0 chr11 10368447 10368532 -140415021 - L2 LINE L2 0 3313 3227 313 302 42 0 chr11 10368606 10368702 -140414851 + L1ME LINE L1 5494 5593 -528 1718 251 24 57 chr11 10368828 10369078 -140414475 + MER119 DNA MER1_type 6 263 -320 2448 51 0 7 chr11 10369078 10369370 -140414183 + AluY SINE Alu 1 290 -21 1718 251 24 57 chr11 10369370 10369716 -140413837 + MER119 DNA MER1_type 263 582 -1 426 261 96 56 chr11 10369914 10369989 -140413564 + L1ME3A LINE L1 3419 3490 -2656 1702 141 19 58 chr11 10369989 10370302 -140413251 + AluJo SINE Alu 1 301 -11 426 261 96 56 chr11 10370302 10370475 -140413078 + L1ME3A LINE L1 3490 3677 -2469 295 262 47 13 chr11 10370534 10370683 -140412870 + L1ME3A LINE L1 3904 4057 -2089 698 278 98 36 chr11 10370741 10371039 -140412514 + L1ME3A LINE L1 4154 4432 -1714 1557 167 71 0 chr11 10371039 10371308 -140412245 - AluJb SINE Alu -24 288 1 698 278 98 36 chr11 10371308 10371592 -140411961 + L1ME3A LINE L1 4432 4772 -1374 1244 143 0 43 chr11 10371593 10371978 -140411575 + AluJb SINE Alu 91 466 0 1330 285 49 18 chr11 10371997 10373117 -140410436 + L1ME3A LINE L1 4795 5954 -216 3990 167 33 13 chr11 10373516 10373780 -140409773 + L1PA16 LINE L1 4395 4652 -1514 1839 167 3 3 chr11 10373780 10374073 -140409480 + AluJo SINE Alu 2 294 -18 3990 167 33 13 chr11 10374073 10375268 -140408285 + L1PA16 LINE L1 4652 5874 -292 349 207 12 0 chr11 10375270 10375352 -140408201 + L1PA16 LINE L1 6082 6164 -2 2280 109 3 3 chr11 10375392 10375705 -140407848 - AluSp SINE Alu 0 313 1 269 302 55 76 chr11 10376165 10376456 -140407097 + ERVL LTR ERVL 306 590 -5174 503 265 168 5 chr11 10376456 10376641 -140406912 + MLT2F LTR ERVL 1 215 -448 4457 145 48 4 chr11 10376642 10377400 -140406153 + L1MB3 LINE L1 5386 6176 -7 1564 232 50 13 chr11 10377426 10377879 -140405674 - L1MC4 LINE L1 -1122 6920 6431 210 191 0 0 chr11 10378003 10378045 -140405508 + GA-rich Low_complexity Low_complexity 3 44 0 319 324 9 0 chr11 10378113 10378224 -140405329 - L1 LINE L1 -1780 4366 4255 620 316 129 2 chr11 10378320 10378716 -140404837 - L1 LINE L1 -2049 4097 3652 405 108 40 0 chr11 10378883 10378957 -140404596 + L1MA8 LINE L1 6211 6287 -4 485 321 38 11 chr11 10379126 10379310 -140404243 - L3 LINE CR1 -6 1571 1383 223 290 39 29 chr11 10379273 10379378 -140404175 + MER5A DNA MER1_type 19 130 -53 * 206 378 0 14 chr11 10379414 10379488 -140404065 - MER5B DNA MER1_type 0 178 106 218 224 0 0 chr11 10379826 10379875 -140403678 - L2 LINE L2 0 3313 3265 319 321 44 0 chr11 10379975 10380112 -140403441 - L2 LINE L2 -182 3090 2948 193 327 40 59 chr11 10380237 10380439 -140403114 - L2 LINE L2 -560 2754 2557 2148 272 80 25 chr11 10380879 10381193 -140402360 - HAL1 LINE L1 -1716 791 496 330 67 0 0 chr11 10381193 10381238 -140402315 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 2148 272 80 25 chr11 10381238 10381672 -140401881 - HAL1 LINE L1 -2011 496 2 2968 79 48 33 chr11 10381772 10382119 -140401434 + L1PB1 LINE L1 5420 5777 -374 2257 106 20 0 chr11 10382119 10382420 -140401133 + AluSg1 SINE Alu 1 307 -2 2968 79 48 33 chr11 10382420 10382526 -140401027 + L1PB1 LINE L1 5777 5880 -271 27 0 0 0 chr11 10382863 10382890 -140400663 + AT_rich Low_complexity Low_complexity 1 27 0 216 0 0 0 chr11 10383636 10383660 -140399893 + (CAAAAA)n Simple_repeat Simple_repeat 1 24 0 386 256 76 40 chr11 10384220 10384497 -140399056 - L1ME4a LINE L1 -122 5999 5713 1035 282 72 52 chr11 10384991 10385505 -140398048 - L1ME3A LINE L1 -278 5892 5369 21 0 0 0 chr11 10385975 10385996 -140397557 + AT_rich Low_complexity Low_complexity 1 21 0 2224 118 0 0 chr11 10386410 10386714 -140396839 - AluY SINE Alu -7 304 1 2490 24 7 3 chr11 10387309 10387599 -140395954 - AluY SINE Alu -6 305 15 980 199 12 0 chr11 10388943 10389114 -140394439 - FAM SINE Alu -2 173 1 1086 252 84 61 chr11 10389143 10389632 -140393921 - L1ME3A LINE L1 -925 5221 4708 2192 105 0 0 chr11 10389632 10389918 -140393635 - AluSg SINE Alu -24 286 1 1086 252 84 61 chr11 10389918 10390163 -140393390 - L1ME3A LINE L1 -1438 4708 4470 2088 146 0 0 chr11 10392138 10392446 -140391107 + AluSx SINE Alu 1 308 -4 1666 161 11 0 chr11 10392924 10393203 -140390350 + AluJo SINE Alu 1 282 -30 24 32 0 0 chr11 10393704 10393735 -140389818 + AT_rich Low_complexity Low_complexity 1 31 0 1539 139 0 8 chr11 10393828 10394073 -140389480 - L1PB4 LINE L1 -2 6154 5912 2217 83 48 0 chr11 10394253 10394543 -140389010 - AluSp SINE Alu -9 304 1 578 248 45 20 chr11 10394543 10394736 -140388817 - L1MD3 LINE L1 -7 7988 7788 385 176 0 65 chr11 10395040 10395148 -140388405 + AluSp/q SINE Alu 196 296 -7 288 180 139 33 chr11 10395143 10395265 -140388288 + Charlie1 DNA MER1_type 2626 2760 -1 * 1903 128 38 85 chr11 10395855 10396253 -140387300 - Tigger7 DNA MER2_type -4 2483 2105 1414 171 75 4 chr11 10396239 10396491 -140387062 - Tigger7 DNA MER2_type -2215 272 3 * 302 283 133 18 chr11 10398274 10398387 -140385166 - MIR SINE MIR -63 145 20 207 100 0 0 chr11 10398531 10398561 -140384992 + (TATG)n Simple_repeat Simple_repeat 4 33 0 570 243 79 26 chr11 10398570 10398837 -140384716 - L1ME4a LINE L1 -196 5925 5645 1327 169 3 112 chr11 10399138 10399469 -140384084 + AluJb SINE Alu 1 295 -7 5048 132 24 40 chr11 10400030 10400430 -140383123 + L1PB3 LINE L1 5083 5488 -666 2021 130 33 0 chr11 10400430 10400730 -140382823 - AluSx SINE Alu 0 312 3 5048 132 24 40 chr11 10400730 10401055 -140382498 + L1PB3 LINE L1 5488 5817 -337 432 0 0 0 chr11 10401055 10401103 -140382450 + (CA)n Simple_repeat Simple_repeat 2 49 0 5048 132 24 40 chr11 10401103 10401470 -140382083 + L1PB3 LINE L1 5817 6154 0 2670 201 0 0 chr11 10401636 10402164 -140381389 - L1P LINE L1 -1358 4788 4261 * 10836 118 20 6 chr11 10402162 10403723 -140379830 + L1PA12 LINE L1 1013 2595 -4986 267 336 27 0 chr11 10403823 10403933 -140379620 + MIR SINE MIR 93 205 -57 580 368 86 25 chr11 10404020 10404498 -140379055 + L3 LINE CR1 864 1370 -207 595 291 99 14 chr11 10404527 10404740 -140378813 - MIR SINE MIR 0 262 32 2199 115 0 13 chr11 10405266 10405571 -140377982 + AluSx SINE Alu 1 301 -11 2150 109 3 31 chr11 10406149 10406469 -140377084 - AluSq SINE Alu 0 313 3 313 302 42 0 chr11 10406929 10407025 -140376528 - L1ME4a LINE L1 -528 5593 5494 360 259 24 0 chr11 10407099 10407184 -140376369 + L2 LINE L2 3227 3313 0 2204 96 0 3 chr11 10407279 10407572 -140375981 + AluY SINE Alu 1 292 -19 234 274 14 0 chr11 10407572 10407645 -140375908 + HAL1 LINE L1 97 170 -2337 270 191 0 0 chr11 10407647 10407689 -140375864 + Alu SINE Alu 1 42 -260 389 70 0 0 chr11 10407790 10407847 -140375706 + Alu SINE Alu 245 301 -1 1036 175 0 0 chr11 10407989 10408160 -140375393 - FAM SINE Alu 0 175 5 2066 140 3 3 chr11 10408243 10408551 -140375002 + AluSg SINE Alu 1 308 -2 242 230 47 61 chr11 10408964 10408985 -140374568 - L1MA10 LINE L1 -10 6324 6304 1703 220 103 16 chr11 10408985 10409481 -140374072 - L1ME1 LINE L1 -20 6146 5608 1978 125 0 0 chr11 10409594 10409874 -140373679 - AluY SINE Alu -31 280 1 226 416 0 0 chr11 10410295 10410396 -140373157 + L2 LINE L2 2595 2695 -619 1969 117 139 115 chr11 10410663 10411159 -140372394 + MER4A LTR ERV1 1 508 -156 4374 148 14 15 chr11 10411160 10411883 -140371670 + MER50 LTR ERV1 1 722 -12 6593 144 43 20 chr11 10411919 10414008 -140369545 + MER50-int LTR ERV1 1 2218 -4987 284 221 0 0 chr11 10414180 10414257 -140369296 + L1MEc LINE L1 2240 2316 -4080 383 175 24 22 chr11 10414267 10414358 -140369195 + Tigger5 DNA MER2_type 4 2323 0 297 221 53 0 chr11 10414381 10414476 -140369077 + L1MEc LINE L1 2331 2430 -3785 504 232 74 71 chr11 10415212 10415509 -140368044 + L1MC5 LINE L1 7638 7935 -26 22 0 0 30 chr11 10415649 10415666 -140367887 + AT_rich Low_complexity Low_complexity 1 18 -14 2092 101 0 10 chr11 10415666 10415964 -140367589 + AluY SINE Alu 1 295 -16 22 0 0 30 chr11 10415964 10415979 -140367574 + AT_rich Low_complexity Low_complexity 18 32 0 23 0 0 0 chr11 10416778 10416801 -140366752 + AT_rich Low_complexity Low_complexity 1 23 0 1058 320 139 25 chr11 10416957 10417567 -140365986 + L3 LINE CR1 895 1574 -3 21 36 0 0 chr11 10417644 10417672 -140365881 + AT_rich Low_complexity Low_complexity 1 28 0 2103 112 7 3 chr11 10417871 10418156 -140365397 + AluSx SINE Alu 1 286 -26 480 18 0 0 chr11 10418156 10418213 -140365340 + (CATA)n Simple_repeat Simple_repeat 2 58 0 386 292 93 62 chr11 10418599 10418952 -140364601 - MLT1J LTR MaLR -43 468 105 2544 44 0 0 chr11 10419703 10419996 -140363557 - AluY SINE Alu -18 293 1 216 328 109 17 chr11 10420482 10420601 -140362952 + MIR3 SINE MIR 9 138 -70 27 29 0 0 chr11 10420691 10420725 -140362828 + AT_rich Low_complexity Low_complexity 1 34 0 2398 75 0 3 chr11 10420804 10421111 -140362442 + AluSg SINE Alu 1 306 -4 415 217 0 0 chr11 10421126 10421218 -140362335 - MER113 DNA MER1_type? -415 106 15 2189 117 0 16 chr11 10421810 10422126 -140361427 - AluSx SINE Alu -1 311 1 365 245 91 7 chr11 10422206 10422349 -140361204 + L1MEc LINE L1 2517 2671 -3544 * 687 159 165 0 chr11 10422347 10422523 -140361030 + L1MB7 LINE L1 5199 5403 -743 3083 163 21 44 chr11 10422544 10422826 -140360727 + L1MB7 LINE L1 5544 5831 -353 2302 69 0 10 chr11 10422826 10423130 -140360423 + AluY SINE Alu 1 301 -10 3083 163 21 44 chr11 10423130 10423373 -140360180 + L1MB7 LINE L1 5831 6078 -106 2174 98 4 0 chr11 10423373 10423648 -140359905 + AluSp SINE Alu 2 277 -36 366 85 0 0 chr11 10423650 10423709 -140359844 + (TCTG)n Simple_repeat Simple_repeat 2 60 0 233 29 29 0 chr11 10423710 10423744 -140359809 + (TA)n Simple_repeat Simple_repeat 1 35 0 3083 163 21 44 chr11 10423744 10423868 -140359685 + L1MB7 LINE L1 6078 6184 0 338 265 143 0 chr11 10423917 10424015 -140359538 + L1ME3A LINE L1 6006 6117 -53 2261 262 173 22 chr11 10424425 10425617 -140357936 + L2 LINE L2 1930 3287 -26 367 358 51 11 chr11 10425753 10425929 -140357624 - L3b LINE CR1 -70 1513 1331 2046 71 4 0 chr11 10425949 10426204 -140357349 - AluY SINE Alu -16 295 40 181 333 72 14 chr11 10426385 10426454 -140357099 + MIR SINE MIR 39 111 -97 281 374 81 17 chr11 10426631 10426805 -140356748 - L3 LINE CR1 -1292 285 101 21 36 0 0 chr11 10426911 10426939 -140356614 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr11 10426962 10426987 -140356566 + AT_rich Low_complexity Low_complexity 1 25 0 1808 183 3 10 chr11 10427133 10427445 -140356108 + AluJb SINE Alu 1 310 -2 515 291 58 28 chr11 10427457 10427784 -140355769 + L1M4 LINE L1 4589 4925 -1221 693 253 16 31 chr11 10427797 10427991 -140355562 + MIR SINE MIR 25 215 -47 183 42 0 0 chr11 10427991 10428015 -140355538 + (CA)n Simple_repeat Simple_repeat 2 25 0 2250 108 0 7 chr11 10428213 10428519 -140355034 - AluSg SINE Alu -6 304 1 2669 33 0 3 chr11 10429044 10429349 -140354204 - AluY SINE Alu -7 304 1 229 313 52 10 chr11 10430158 10430254 -140353299 + MIR3 SINE MIR 103 202 -6 674 130 0 0 chr11 10431369 10431469 -140352084 + L1PB3 LINE L1 6041 6140 -14 25 83 0 0 chr11 10431472 10431532 -140352021 + AT_rich Low_complexity Low_complexity 1 60 0 247 283 0 0 chr11 10432429 10432489 -140351064 + MIR3 SINE MIR 146 205 -3 578 248 50 0 chr11 10433451 10433592 -140349961 - MIR3 SINE MIR -23 185 38 15125 196 59 12 chr11 10434087 10437919 -140345634 - L1PB1 LINE L1 0 6867 2616 2045 135 0 0 chr11 10437919 10438227 -140345326 + AluSx SINE Alu 1 308 0 15125 196 59 12 chr11 10438227 10440967 -140342586 - L1PB1 LINE L1 -4251 2616 6 1148 163 32 0 chr11 10442078 10442299 -140341254 - L1PA16 LINE L1 -9 6157 5930 2071 76 73 0 chr11 10442677 10442952 -140340601 + AluY SINE Alu 2 296 -15 1665 139 12 111 chr11 10443106 10443262 -140340291 + AluJo SINE Alu 1 108 -204 2279 102 7 0 chr11 10443262 10443556 -140339997 + AluSx SINE Alu 1 296 -16 1665 139 12 111 chr11 10443556 10443731 -140339822 + AluJo SINE Alu 108 299 -13 22 0 0 0 chr11 10444136 10444158 -140339395 + AT_rich Low_complexity Low_complexity 1 22 0 373 198 57 47 chr11 10444255 10444361 -140339192 - MIR SINE MIR -20 242 136 1766 117 0 12 chr11 10444527 10444784 -140338769 - AluJb SINE Alu -14 298 45 589 174 8 25 chr11 10444785 10444906 -140338647 + AluJb SINE Alu 189 307 -5 205 222 32 63 chr11 10445077 10445140 -140338413 - L2 LINE L2 -1 3312 3252 1890 159 0 19 chr11 10446031 10446340 -140337213 - AluJo SINE Alu -9 303 1 1902 144 4 0 chr11 10446740 10447017 -140336536 - AluSq SINE Alu -35 278 1 26 0 0 0 chr11 10447022 10447048 -140336505 + AT_rich Low_complexity Low_complexity 1 26 0 3193 178 86 8 chr11 10447057 10447794 -140335759 - Charlie1 DNA MER1_type -159 2602 1809 807 211 26 0 chr11 10447810 10447966 -140335587 - Charlie1 DNA MER1_type -1142 1619 1460 278 222 16 0 chr11 10447963 10448026 -140335527 - Charlie1 DNA MER1_type -2640 121 58 * 603 258 0 8 chr11 10448127 10448259 -140335294 - MER8 DNA MER2_type -103 136 6 234 258 15 15 chr11 10448787 10448853 -140334700 - MIR SINE MIR -1 261 196 5095 240 34 20 chr11 10448857 10450125 -140333428 - L1M4 LINE L1 -1287 4859 3565 1431 194 81 6 chr11 10450125 10450445 -140333108 + MER2 DNA MER2_type 1 344 0 5095 240 34 20 chr11 10450445 10450700 -140332853 - L1M4 LINE L1 -2581 3565 3315 2834 86 0 18 chr11 10450704 10450875 -140332678 + LTR66 LTR ERVL 1 174 -436 2200 107 7 0 chr11 10450875 10451175 -140332378 + AluSx SINE Alu 1 302 -10 2834 86 0 18 chr11 10451175 10451386 -140332167 + LTR66 LTR ERVL 174 376 -234 607 189 30 30 chr11 10451386 10451518 -140332035 - LTR10B LTR ERV1 0 547 416 244 253 123 12 chr11 10451588 10451731 -140331822 - LTR10B LTR ERV1 -297 250 1 * 253 0 0 57 chr11 10451731 10451759 -140331794 + LTR66 LTR ERVL 375 400 -210 1588 81 88 59 chr11 10451760 10452032 -140331521 + LTR66 LTR ERVL 331 610 0 1890 225 33 18 chr11 10452032 10452468 -140331085 - L1M4 LINE L1 -2828 3318 2869 1706 197 7 3 chr11 10452468 10452763 -140330790 + AluJo SINE Alu 1 296 -16 1890 225 33 18 chr11 10452763 10452926 -140330627 - L1M4 LINE L1 -3277 2869 2710 2268 261 69 65 chr11 10455406 10456675 -140326878 - L1MC4 LINE L1 0 8042 6768 29 60 0 0 chr11 10457439 10457489 -140326064 + AT_rich Low_complexity Low_complexity 1 50 0 227 176 28 190 chr11 10457959 10458101 -140325452 - MIR SINE MIR -30 232 114 458 279 46 9 chr11 10459610 10459777 -140323776 + MIR3 SINE MIR 3 180 -28 6746 69 5 2 chr11 10459917 10461068 -140322485 - L1PA6 LINE L1 0 6154 5001 1804 78 0 41 chr11 10461068 10461313 -140322240 + AluY SINE Alu 1 235 -76 243 0 0 0 chr11 10462651 10462678 -140320875 + (TG)n Simple_repeat Simple_repeat 2 28 0 23 0 0 0 chr11 10462842 10462865 -140320688 + AT_rich Low_complexity Low_complexity 1 23 0 1113 298 32 34 chr11 10463506 10463973 -140319580 - L2 LINE L2 0 3313 2848 274 319 0 0 chr11 10463973 10464045 -140319508 - L2 LINE L2 -691 2623 2552 465 118 24 0 chr11 10464183 10464268 -140319285 - L1MB4 LINE L1 0 6180 6094 1600 194 11 0 chr11 10464302 10464586 -140318967 + AluJo SINE Alu 1 287 -25 29 0 0 0 chr11 10465043 10465072 -140318481 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr11 10467617 10467638 -140315915 + AT_rich Low_complexity Low_complexity 1 21 0 1550 184 0 16 chr11 10468031 10468287 -140315266 + AluJo SINE Alu 4 255 -57 1535 123 54 0 chr11 10469017 10469278 -140314275 + L1MA8 LINE L1 6013 6287 -4 1564 192 3 27 chr11 10469496 10469793 -140313760 - AluJo SINE Alu -22 290 1 256 268 18 0 chr11 10470078 10470134 -140313419 + MER20B DNA MER1_type 84 140 -643 1989 138 0 3 chr11 10470343 10470647 -140312906 + AluSx SINE Alu 3 305 -7 389 353 40 20 chr11 10471018 10471270 -140312283 + L1MEd LINE L1 594 850 -5269 549 309 57 45 chr11 10471292 10471685 -140311868 + L1M3d LINE L1 1 1552 -5475 1344 217 77 68 chr11 10471813 10472357 -140311196 + L1ME2 LINE L1 5500 6102 -62 2575 191 18 0 chr11 10472366 10472862 -140310691 + L1MB7 LINE L1 5652 6156 -28 861 222 199 73 chr11 10472874 10473492 -140310061 + L1MC5 LINE L1 6837 7532 -429 297 211 119 108 chr11 10473600 10473785 -140309768 + L1ME3A LINE L1 5977 6163 -7 252 252 0 87 chr11 10473862 10473965 -140309588 - MLT1J LTR MaLR -58 453 360 232 263 100 25 chr11 10474033 10474113 -140309440 + L2 LINE L2 3186 3271 -1 21 0 0 0 chr11 10474212 10474233 -140309320 + AT_rich Low_complexity Low_complexity 1 21 0 4277 152 10 15 chr11 10475547 10476262 -140307291 - MER50 LTR ERV1 -23 711 1 416 198 0 85 chr11 10476607 10476713 -140306840 + MER34B LTR ERV1 467 583 -2 344 347 41 0 chr11 10477062 10477183 -140306370 - L2 LINE L2 -9 3263 3138 23 0 0 0 chr11 10477416 10477439 -140306114 + AT_rich Low_complexity Low_complexity 1 23 0 223 389 14 0 chr11 10477896 10477968 -140305585 + L2 LINE L2 3101 3173 -99 310 216 227 0 chr11 10478714 10478802 -140304751 + L2 LINE L2 3204 3311 -2 2341 71 0 0 chr11 10479457 10479764 -140303789 + AluY SINE Alu 2 308 0 1763 106 102 0 chr11 10480165 10480430 -140303123 + AluSx SINE Alu 1 292 -20 578 146 50 19 chr11 10480751 10480914 -140302639 + MLT1D LTR MaLR 236 505 0 289 262 61 55 chr11 10480936 10481077 -140302476 - L1MD3 LINE L1 -11 7984 7839 1840 145 0 28 chr11 10481077 10481394 -140302159 - AluJb SINE Alu 0 309 1 289 262 61 55 chr11 10481394 10481415 -140302138 - L1MD3 LINE L1 -156 7839 7820 2052 249 90 84 chr11 10481415 10482335 -140301218 + L1MC4 LINE L1 6084 7093 -808 189 0 0 0 chr11 10482335 10482356 -140301197 + (TGAA)n Simple_repeat Simple_repeat 3 23 0 2052 249 90 84 chr11 10482356 10482666 -140300887 + L1MC4 LINE L1 7093 7400 -501 406 301 65 56 chr11 10482642 10482948 -140300605 + L1M4 LINE L1 22 624 -6231 * 1552 277 65 52 chr11 10483144 10483800 -140299753 + L1M4 LINE L1 1004 1650 -5309 1724 176 13 10 chr11 10483800 10484102 -140299451 + AluJo SINE Alu 1 303 -9 1552 277 65 52 chr11 10484102 10484723 -140298830 + L1M4 LINE L1 1650 2312 -4647 1741 182 30 3 chr11 10484723 10485025 -140298528 + AluJb SINE Alu 1 310 -2 1552 277 65 52 chr11 10485025 10485116 -140298437 + L1M4 LINE L1 2312 2400 -4559 7168 95 20 2 chr11 10485173 10486979 -140296574 + L1PA7 LINE L1 4319 6149 -5 7118 194 17 18 chr11 10487172 10488490 -140295063 - MER50-int LTR ERV1 -3843 3362 2168 9076 108 35 3 chr11 10588501 10590019 -140193534 + MER57-int LTR ERV1 5546 7148 -389 639 123 44 0 chr11 10590019 10590133 -140193420 + LTR54B LTR ERV1 3 121 -377 198 0 0 0 chr11 10590886 10590908 -140192645 + (TA)n Simple_repeat Simple_repeat 2 23 0 441 368 133 0 chr11 10590994 10591369 -140192184 + LTR16A LTR ERVL 18 442 -8 195 235 0 0 chr11 10592057 10592091 -140191462 + L2 LINE L2 3008 3041 -272 246 250 38 12 chr11 10592238 10592318 -140191235 - MLT1I LTR MaLR -228 181 100 974 105 42 0 chr11 10592591 10592734 -140190819 + AluSp SINE Alu 1 149 -164 7399 157 53 33 chr11 10592837 10593543 -140190010 - MER51-int LTR ERV1 -2460 5356 4665 2318 85 0 3 chr11 10593543 10593848 -140189705 - AluY SINE Alu -7 304 1 7399 157 53 33 chr11 10593848 10594714 -140188839 - MER51-int LTR ERV1 -3151 4665 3753 1337 150 19 0 chr11 10594714 10594927 -140188626 - L1M1 LINE L1 -7333 232 16 2043 115 0 50 chr11 10594941 10595264 -140188289 - AluSx SINE Alu -5 307 1 690 245 85 71 chr11 10595289 10595575 -140187978 - L1M4 LINE L1 -2281 3865 3570 1422 193 27 48 chr11 10595575 10595870 -140187683 - AluJo SINE Alu -23 289 1 690 245 85 71 chr11 10595870 10596008 -140187545 - L1M4 LINE L1 -2576 3570 3435 2205 117 7 0 chr11 10596082 10596391 -140187162 + AluSq SINE Alu 3 313 0 3841 227 26 62 chr11 10596393 10597296 -140186257 - L1MA10 LINE L1 -44 7709 6775 718 236 6 13 chr11 10597296 10597453 -140186100 - FAM SINE Alu -19 156 1 3841 227 26 62 chr11 10597453 10597562 -140185991 - L1MA10 LINE L1 -978 6775 6748 1793 168 7 0 chr11 10597562 10597860 -140185693 - AluJb SINE Alu -12 300 1 3841 227 26 62 chr11 10597860 10598045 -140185508 - L1MA10 LINE L1 -1005 6748 6558 2507 196 35 2 chr11 10598041 10598561 -140184992 + L1 LINE L1 4595 5131 -1015 * 5563 239 59 9 chr11 10598561 10600531 -140183022 - L1MA10 LINE L1 -2289 5276 3210 303 321 63 79 chr11 10600576 10600766 -140182787 - L1MA10 LINE L1 -5454 2112 1926 239 252 58 19 chr11 10600859 10600962 -140182591 - L1MA10 LINE L1 -7432 133 27 700 249 143 19 chr11 10600977 10601345 -140182208 - L1M4 LINE L1 -2689 3457 3030 2014 128 7 10 chr11 10601345 10601642 -140181911 - AluSx SINE Alu -16 296 1 700 249 143 19 chr11 10601642 10601691 -140181862 - L1M4 LINE L1 -3116 3030 2988 594 220 0 0 chr11 10601791 10601911 -140181642 + AluJb SINE Alu 182 301 0 1335 206 7 39 chr11 10602001 10602282 -140181271 + AluJo SINE Alu 11 282 -30 2231 87 0 20 chr11 10602282 10602582 -140180971 - AluSc SINE Alu -13 296 3 1837 141 0 0 chr11 10602921 10603183 -140180370 + AluSx SINE Alu 35 296 -16 579 241 15 87 chr11 10603422 10603687 -140179866 - L1ME1 LINE L1 -5 6161 5916 612 259 2 1 chr11 10603716 10603864 -140179689 - L1ME1 LINE L1 -370 5796 5651 400 204 183 48 chr11 10603914 10603948 -140179605 + L1M4 LINE L1 2271 2299 -3847 1769 184 0 7 chr11 10603948 10604253 -140179300 + AluJb SINE Alu 1 303 -9 400 204 183 48 chr11 10604253 10604448 -140179105 + L1M4 LINE L1 2299 2531 -3615 2165 132 0 0 chr11 10604453 10604756 -140178797 + AluSx SINE Alu 1 303 -9 296 252 9 0 chr11 10604861 10604968 -140178585 + (TATATG)n Simple_repeat Simple_repeat 1 108 0 775 279 37 0 chr11 10604969 10605291 -140178262 + L1M4 LINE L1 2645 2978 -3168 954 35 0 0 chr11 10606740 10606853 -140176700 - L1P LINE L1 -6033 113 1 12167 156 33 19 chr11 10606858 10607032 -140176521 + L1MA3 LINE L1 2746 2916 -3389 2086 130 0 3 chr11 10607032 10607333 -140176220 + AluSx SINE Alu 1 300 -12 12167 156 33 19 chr11 10607333 10607347 -140176206 + L1MA3 LINE L1 2916 2928 -3377 2238 89 3 3 chr11 10607347 10607640 -140175913 + AluSx SINE Alu 1 293 -19 12167 156 33 19 chr11 10607640 10610955 -140172598 + L1MA3 LINE L1 2928 6305 0 605 260 40 35 chr11 10611741 10611941 -140171612 - L2 LINE L2 -4 3309 3109 2197 122 0 0 chr11 10611966 10612269 -140171284 - AluSx SINE Alu -9 303 1 231 36 0 0 chr11 10612408 10612436 -140171117 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 1085 199 5 23 chr11 10612438 10612654 -140170899 - AluJb SINE Alu -31 281 70 252 0 0 0 chr11 10613017 10613045 -140170508 + (TG)n Simple_repeat Simple_repeat 1 28 0 1909 154 4 0 chr11 10613046 10613326 -140170227 - AluSx SINE Alu -31 281 1 219 358 0 81 chr11 10613706 10613829 -140169724 - L3 LINE CR1 -7 1570 1458 382 241 28 46 chr11 10613848 10613956 -140169597 - L2 LINE L2 -4 3309 3204 335 319 183 0 chr11 10615649 10615840 -140167713 + L3 LINE CR1 766 991 -586 503 273 36 7 chr11 10616081 10616220 -140167333 + MIR SINE MIR 7 149 -113 2152 256 109 24 chr11 10616543 10617433 -140166120 + L1M4 LINE L1 2654 3467 -2679 252 0 0 0 chr11 10617433 10617461 -140166092 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 2093 91 29 4 chr11 10617464 10617739 -140165814 - AluSx SINE Alu -30 282 1 2152 256 109 24 chr11 10617739 10617811 -140165742 + L1M4 LINE L1 3468 3702 -2444 2900 234 36 9 chr11 10617817 10618612 -140164941 + L1M4 LINE L1 3904 4720 -1426 619 244 137 60 chr11 10618664 10618913 -140164640 - MER21B LTR ERV1 -57 806 529 705 243 153 9 chr11 10618953 10619163 -140164390 - MER21B LTR ERV1 -553 310 132 2199 127 30 43 chr11 10619163 10619532 -140164021 + THE1B LTR MaLR 1 364 0 11691 94 4 1 chr11 10619533 10621107 -140162446 + THE1B-int LTR MaLR 2 1580 0 2378 116 30 25 chr11 10621107 10621469 -140162084 + THE1B LTR MaLR 1 364 0 705 243 153 9 chr11 10621469 10621493 -140162060 - MER21B LTR ERV1 -730 133 50 306 276 13 0 chr11 10621497 10621573 -140161980 - MER21B LTR ERV1 -768 95 19 4330 118 15 126 chr11 10621594 10623145 -140160408 + pTR5 LTR ERV1 743 2606 0 360 240 13 0 chr11 10623150 10623225 -140160328 - MER21B LTR ERV1 -773 90 15 956 221 49 49 chr11 10623248 10623597 -140159956 + L1M4 LINE L1 4796 5144 -1002 251 360 54 27 chr11 10624090 10624237 -140159316 - MIR3 SINE MIR -57 151 1 6259 104 77 14 chr11 10624586 10625724 -140157829 + L1M1 LINE L1 2337 3546 -4019 1223 211 39 4 chr11 10625729 10626009 -140157544 + L1M1 LINE L1 3872 4161 -3404 300 62 31 31 chr11 10626018 10626083 -140157470 + (TTTTTG)n Simple_repeat Simple_repeat 2 66 0 39938 35 21 2 chr11 10626086 10632015 -140151538 - L1PA3 LINE L1 -4 6151 103 254 174 0 0 chr11 10632115 10632161 -140151392 + Alu SINE Alu 250 295 -7 730 230 97 18 chr11 10632173 10632399 -140151154 - L1ME LINE L1 -640 5526 5283 1876 140 9 43 chr11 10632435 10632447 -140151106 - AluJo SINE Alu 0 312 301 204 40 0 0 chr11 10632447 10632472 -140151081 + (TCCC)n Simple_repeat Simple_repeat 1 25 0 1876 140 9 43 chr11 10632472 10632648 -140150905 - AluJo SINE Alu -11 301 137 2353 59 45 0 chr11 10632648 10632934 -140150619 - AluY SINE Alu -12 299 1 1876 140 9 43 chr11 10632934 10633066 -140150487 - AluJo SINE Alu -175 137 2 23 0 0 0 chr11 10633223 10633246 -140150307 + AT_rich Low_complexity Low_complexity 1 23 0 31 44 0 0 chr11 10633547 10633592 -140149961 + AT_rich Low_complexity Low_complexity 1 45 0 502 261 151 23 chr11 10633956 10634174 -140149379 - MIR SINE MIR 0 262 17 1651 191 7 17 chr11 10634960 10635259 -140148294 + AluJo SINE Alu 1 296 -16 231 36 0 0 chr11 10635259 10635287 -140148266 + (TG)n Simple_repeat Simple_repeat 2 29 0 268 279 38 0 chr11 10635294 10635373 -140148180 - MER103 DNA DNA -47 119 38 1349 150 154 8 chr11 10635377 10635644 -140147909 - AluSg1 SINE Alu -3 306 1 1545 188 32 29 chr11 10635668 10635977 -140147576 - AluJb SINE Alu -2 310 1 488 295 26 3 chr11 10636151 10636351 -140147202 + MIR SINE MIR 1 260 -2 224 309 93 21 chr11 10637502 10637599 -140145954 + MIR SINE MIR 36 139 -69 4554 153 32 13 chr11 10637982 10638420 -140145133 - L1MA8 LINE L1 0 6291 5863 2031 130 27 10 chr11 10638420 10638719 -140144834 - AluSx SINE Alu -4 308 5 4554 153 32 13 chr11 10638719 10638945 -140144608 - L1MA8 LINE L1 -428 5863 5643 1849 131 44 34 chr11 10638945 10639243 -140144310 - AluJb SINE Alu -8 304 4 4554 153 32 13 chr11 10639243 10639483 -140144070 - L1MA8 LINE L1 -648 5643 5369 389 206 26 153 chr11 10640052 10640241 -140143312 - HAL1 LINE L1 0 2507 2343 2612 108 9 35 chr11 10640287 10640499 -140143054 - MER57B LTR ERV1 -10 424 227 2503 60 0 22 chr11 10640499 10640816 -140142737 - AluY SINE Alu -1 310 1 2612 108 9 35 chr11 10640816 10641038 -140142515 - MER57B LTR ERV1 -207 227 1 593 90 0 22 chr11 10641162 10641251 -140142302 + AluJb SINE Alu 213 299 -13 369 309 72 37 chr11 10641255 10641604 -140141949 + L1PA2 LINE L1 5465 5825 -330 * 2434 219 136 17 chr11 10641294 10642064 -140141489 + L1MD2 LINE L1 5500 7992 -3 2264 99 0 0 chr11 10642103 10642396 -140141157 - AluY SINE Alu -17 294 2 1309 194 55 22 chr11 10642439 10642617 -140140936 - AluJo SINE Alu -6 306 114 189 0 0 0 chr11 10642617 10642638 -140140915 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1309 194 55 22 chr11 10642638 10642732 -140140821 - AluJo SINE Alu -198 114 25 795 231 9 0 chr11 10642740 10642956 -140140597 + Charlie2a DNA MER1_type 1755 1972 -890 2260 103 13 0 chr11 10643075 10643376 -140140177 + AluSx SINE Alu 1 305 -7 261 308 28 75 chr11 10644174 10644281 -140139272 - L2 LINE L2 -49 3223 3122 417 227 177 14 chr11 10644435 10644576 -140138977 - MIR SINE MIR -8 254 91 217 216 52 113 chr11 10644702 10644799 -140138754 - L2 LINE L2 -46 3267 3177 2692 198 12 14 chr11 10645253 10645844 -140137709 - L1MB3 LINE L1 0 6183 5594 22 35 0 0 chr11 10645847 10645876 -140137677 + AT_rich Low_complexity Low_complexity 1 29 0 347 301 135 31 chr11 10646091 10646417 -140137136 + L1M4 LINE L1 3127 3486 -2660 2233 188 40 10 chr11 10646429 10646930 -140136623 + L1MD3 LINE L1 7455 7970 -25 226 178 0 0 chr11 10647154 10647199 -140136354 + L1M4 LINE L1 3718 3762 -2384 2455 72 0 10 chr11 10647350 10647657 -140135896 - AluSq SINE Alu -9 304 1 21 36 0 0 chr11 10647691 10647719 -140135834 + AT_rich Low_complexity Low_complexity 1 28 0 934 194 24 65 chr11 10647826 10648166 -140135387 - LTR37B LTR ERV1 -11 457 132 330 284 140 53 chr11 10648269 10648533 -140135020 + L1MC/D LINE L1 5273 5559 -2249 344 197 0 0 chr11 10648820 10648881 -140134672 - MER31B LTR ERV1 -89 377 317 26 50 0 0 chr11 10648935 10648975 -140134578 + AT_rich Low_complexity Low_complexity 1 40 0 471 223 0 0 chr11 10649388 10649491 -140134062 + MER3 DNA MER1_type 1 103 -106 457 175 10 52 chr11 10650081 10650178 -140133375 + MER21B LTR ERV1 1 93 -770 2600 248 63 11 chr11 10650197 10650942 -140132611 + MER21B LTR ERV1 19 802 -61 1938 98 4 4 chr11 10653222 10653478 -140130075 - AluSp SINE Alu -18 295 40 382 230 30 30 chr11 10653618 10653753 -140129800 + L1M4 LINE L1 4500 4634 -1512 2412 69 0 7 chr11 10653758 10654064 -140129489 - AluY SINE Alu -7 304 1 1788 170 3 3 chr11 10654251 10654556 -140128997 + AluJb SINE Alu 1 305 0 1773 275 69 5 chr11 10655020 10655573 -140127980 - MLT1G LTR MaLR -2 588 1 5837 147 15 5 chr11 10655820 10657692 -140125861 + L1PA13 LINE L1 4191 6072 -91 1005 142 0 35 chr11 10657807 10657976 -140125577 + FRAM SINE Alu 14 176 0 41827 39 6 1 chr11 10658066 10664189 -140119364 + L1PA4 LINE L1 2 6152 -3 358 314 100 52 chr11 10664397 10664735 -140118818 - L1MC/D LINE L1 -331 5859 5510 823 312 152 21 chr11 10665553 10666231 -140117322 - L2 LINE L2 -5 3308 2535 300 229 0 0 chr11 10666231 10666292 -140117261 + Tigger2 DNA MER2_type 2 62 -2656 274 321 38 31 chr11 10666422 10666581 -140116972 + MIR SINE MIR 97 256 -6 241 202 121 40 chr11 10666872 10666971 -140116582 - MLT1J2 LTR MaLR -305 145 39 544 272 156 11 chr11 10668248 10668627 -140114926 - MLT1J2 LTR MaLR -11 435 1 28 0 0 0 chr11 10669020 10669048 -140114505 + AT_rich Low_complexity Low_complexity 1 28 0 2407 87 3 0 chr11 10670791 10671103 -140112450 + AluSp SINE Alu 1 313 0 1294 258 65 4 chr11 10671794 10672283 -140111270 + L1M4 LINE L1 2714 3232 -2914 1177 219 43 41 chr11 10672310 10672702 -140110851 - L1MC/D LINE L1 -1109 5106 4714 279 277 57 14 chr11 10672705 10672846 -140110707 - L1MC/D LINE L1 -1787 4428 4282 260 287 47 15 chr11 10672848 10673049 -140110504 - L1ME LINE L1 -5040 1165 956 386 329 36 15 chr11 10673091 10673228 -140110325 - L1ME LINE L1 -5474 922 783 2179 175 103 119 chr11 10674398 10675161 -140108392 + MER52A LTR ERV1 1 853 -688 5060 173 7 1 chr11 10675161 10676112 -140107441 + L1P LINE L1 4359 5315 -831 1754 98 0 4 chr11 10676116 10676351 -140107202 + Charlie3 DNA MER1_type 2469 2702 -8 4208 205 166 15 chr11 10676351 10677622 -140105931 + L1 LINE L1 2621 4166 -1980 5120 75 20 20 chr11 10677622 10678145 -140105408 + LTR8 LTR ERV1 1 526 -165 2197 82 43 0 chr11 10678145 10678425 -140105128 + AluY SINE Alu 1 292 -19 5120 75 20 20 chr11 10678425 10678592 -140104961 + LTR8 LTR ERV1 525 691 0 4208 205 166 15 chr11 10678592 10678743 -140104810 + L1 LINE L1 4166 4293 -1853 288 250 0 0 chr11 10678965 10679025 -140104528 + GA-rich Low_complexity Low_complexity 3 62 0 436 174 46 28 chr11 10679034 10679143 -140104410 + L1ME4a LINE L1 5962 6072 -49 281 331 45 6 chr11 10679263 10679420 -140104133 + L2 LINE L2 2886 3048 -224 2139 117 7 0 chr11 10679442 10679732 -140103821 + AluSx SINE Alu 14 305 -7 369 282 33 98 chr11 10680029 10680227 -140103326 + MLT1J LTR MaLR 1 221 -289 1258 179 68 64 chr11 10680232 10680528 -140103025 + AluJo SINE Alu 5 301 -11 228 313 17 108 chr11 10680636 10680812 -140102741 + MLT1J LTR MaLR 342 501 -10 21 0 0 0 chr11 10681110 10681131 -140102422 + AT_rich Low_complexity Low_complexity 1 21 0 306 224 0 0 chr11 10682042 10682100 -140101453 - MIR SINE MIR -24 238 181 2402 90 0 3 chr11 10682320 10682621 -140100932 - AluSq SINE Alu -13 300 1 742 176 55 48 chr11 10682625 10682790 -140100763 - FRAM SINE Alu 0 166 1 2295 94 0 13 chr11 10682942 10683251 -140100302 - AluSq SINE Alu -8 305 1 1268 250 89 39 chr11 10683775 10684215 -140099338 - MLT1C LTR MaLR -5 462 1 622 137 21 0 chr11 10684482 10684604 -140098949 - FLAM_C SINE Alu 0 144 21 499 70 0 0 chr11 10684605 10684676 -140098877 - Alu SINE Alu -8 304 234 749 168 0 0 chr11 10684685 10684810 -140098743 - FLAM_C SINE Alu -18 125 1 24 0 0 0 chr11 10686121 10686145 -140097408 + AT_rich Low_complexity Low_complexity 1 24 0 2326 91 0 0 chr11 10686984 10687280 -140096273 - AluSx SINE Alu -5 307 12 303 28 0 0 chr11 10688645 10688681 -140094872 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 2123 107 4 0 chr11 10688686 10688966 -140094587 - AluSx SINE Alu -30 282 2 1429 174 97 0 chr11 10688969 10689251 -140094302 - AluJb SINE Alu 0 307 1 23 33 0 0 chr11 10689254 10689284 -140094269 + AT_rich Low_complexity Low_complexity 1 30 0 293 244 24 24 chr11 10689496 10689578 -140093975 - L1M4 LINE L1 -688 5496 5415 2456 62 3 10 chr11 10689631 10689940 -140093613 - AluY SINE Alu -1 310 4 2362 143 33 21 chr11 10690047 10690475 -140093078 + Tigger2a DNA MER2_type 1 433 -1 29 78 0 0 chr11 10690498 10690562 -140092991 + AT_rich Low_complexity Low_complexity 1 64 0 225 279 0 0 chr11 10690571 10690632 -140092921 - L1P1 LINE L1 -397 5758 5698 850 227 0 0 chr11 10690729 10690883 -140092670 + FRAM SINE Alu 1 154 -12 891 231 40 27 chr11 10690883 10691100 -140092453 + MIR SINE MIR 15 236 -26 303 332 48 48 chr11 10691268 10691518 -140092035 + MLT1K LTR MaLR 230 479 -109 377 276 10 0 chr11 10691521 10691619 -140091934 - L1ME LINE L1 -511 5610 5512 182 351 152 12 chr11 10693112 10693283 -140090270 + L2 LINE L2 2426 2620 -694 369 259 114 11 chr11 10693290 10693519 -140090034 - MLT1J LTR MaLR -4 507 211 321 47 0 0 chr11 10693519 10693562 -140089991 + (TTTAA)n Simple_repeat Simple_repeat 3 45 0 1930 130 7 18 chr11 10693562 10693846 -140089707 - AluSx SINE Alu -29 283 3 225 94 0 0 chr11 10693950 10693982 -140089571 + (CAT)n Simple_repeat Simple_repeat 2 33 0 443 256 55 91 chr11 10694383 10694582 -140088971 + MIR SINE MIR 7 198 -64 1580 149 0 102 chr11 10694636 10694958 -140088595 + AluJb SINE Alu 2 290 -22 6505 69 8 3 chr11 10695200 10696055 -140087498 + L1PA7 LINE L1 5285 6143 -11 28 29 0 0 chr11 10696055 10696090 -140087463 + AT_rich Low_complexity Low_complexity 1 35 0 275 333 75 0 chr11 10696090 10696183 -140087370 + L2 LINE L2 3169 3268 -4 23 0 0 0 chr11 10697642 10697665 -140085888 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr11 10698006 10698029 -140085524 + AT_rich Low_complexity Low_complexity 1 23 0 2187 204 30 22 chr11 10698651 10699150 -140084403 - L1ME2 LINE L1 -146 6018 5516 3917 166 51 10 chr11 10700011 10700712 -140082841 - MER44D DNA MER2_type -3 602 1 555 146 0 10 chr11 10701248 10701351 -140082202 + L1MB2 LINE L1 5394 5495 -676 1018 116 0 7 chr11 10701354 10701500 -140082053 + AluSq/x SINE Alu 1 145 -167 2366 84 3 6 chr11 10701500 10701811 -140081742 + AluSg SINE Alu 1 310 0 3350 174 34 25 chr11 10701813 10702487 -140081066 + L1MB2 LINE L1 5491 6170 -1 408 276 39 31 chr11 10702490 10702617 -140080936 - MER5B DNA MER1_type -50 128 1 181 87 22 43 chr11 10703470 10703516 -140080037 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 22 70 0 0 chr11 10703831 10703874 -140079679 + AT_rich Low_complexity Low_complexity 1 43 0 2305 106 0 0 chr11 10704958 10705261 -140078292 - AluSx SINE Alu -9 303 1 227 371 24 67 chr11 10705703 10705913 -140077640 - L2 LINE L2 -420 2894 2694 2485 59 0 10 chr11 10706228 10706535 -140077018 - AluY SINE Alu -7 304 1 238 254 48 0 chr11 10706621 10706684 -140076869 - HsTC2 DNA Tc2 -1816 82 17 269 259 73 88 chr11 10707399 10707673 -140075880 + L1MEd LINE L1 569 838 -5281 453 276 32 40 chr11 10707897 10708147 -140075406 + L1MEd LINE L1 1010 1257 -4862 815 230 55 32 chr11 10708171 10708388 -140075165 - MIR SINE MIR 0 262 41 372 375 7 28 chr11 10708756 10708900 -140074653 + L2 LINE L2 3132 3272 0 28 0 0 0 chr11 10709013 10709041 -140074512 + AT_rich Low_complexity Low_complexity 1 28 0 1894 164 0 0 chr11 10709127 10709432 -140074121 + AluJo SINE Alu 1 305 -7 2416 122 8 19 chr11 10709834 10710202 -140073351 - THE1B LTR MaLR 0 364 1 2180 117 0 3 chr11 10710527 10710827 -140072726 - AluSx SINE Alu -13 299 1 23 33 0 0 chr11 10711214 10711244 -140072309 + AT_rich Low_complexity Low_complexity 1 30 0 2793 13 0 0 chr11 10713597 10713904 -140069649 + AluY SINE Alu 1 307 -4 2558 230 56 42 chr11 10714339 10714516 -140069037 - L1ME1 LINE L1 -47 6119 5946 1436 226 81 25 chr11 10714516 10714958 -140068595 + MLT1C LTR MaLR 1 467 0 2558 230 56 42 chr11 10714958 10715771 -140067782 - L1ME1 LINE L1 -220 5946 5114 2037 104 3 16 chr11 10715771 10716078 -140067475 - AluSx SINE Alu -9 303 1 2558 230 56 42 chr11 10716078 10716153 -140067400 - L1ME1 LINE L1 -1052 5114 5042 333 217 41 152 chr11 10716180 10716220 -140067333 - L1ME1 LINE L1 -10 6156 6113 1032 144 0 0 chr11 10716220 10716380 -140067173 + L1PA16 LINE L1 5988 6147 -19 333 217 41 152 chr11 10716380 10716629 -140066924 - L1ME1 LINE L1 -53 6113 5899 302 326 39 54 chr11 10716688 10716817 -140066736 - LTR67 LTR ERVL -386 171 45 964 258 32 0 chr11 10717272 10717520 -140066033 + L1M4 LINE L1 3584 3839 -2307 443 156 0 0 chr11 10717581 10717658 -140065895 + L1M4b LINE L1 95 171 -6688 2621 182 53 0 chr11 10717659 10718131 -140065422 + L1M4b LINE L1 595 1091 -5868 586 259 35 6 chr11 10718133 10718307 -140065246 + L1 LINE L1 2685 2863 -3283 1506 197 3 23 chr11 10718318 10718623 -140064930 - AluJo SINE Alu -13 299 1 10133 108 29 25 chr11 10718630 10720384 -140063169 - HUERS-P1 LTR ERV1 -1327 5271 3060 9505 101 13 67 chr11 10720371 10720729 -140062824 - HUERS-P1 LTR ERV1 -4659 1604 1228 * 297 0 0 0 chr11 10720729 10720762 -140062791 + (CA)n Simple_repeat Simple_repeat 2 34 0 9505 101 13 67 chr11 10720762 10722099 -140061454 - HUERS-P1 LTR ERV1 -5035 1228 1 422 162 0 0 chr11 10722099 10722167 -140061386 - LTR8 LTR ERV1 0 691 624 616 125 0 0 chr11 10722269 10722365 -140061188 + Tigger2 DNA MER2_type 649 744 -1974 1010 156 147 0 chr11 10722430 10722501 -140061052 + Tigger2 DNA MER2_type 2462 2521 -197 450 0 0 0 chr11 10722501 10722551 -140061002 + (TA)n Simple_repeat Simple_repeat 1 50 0 1010 156 147 0 chr11 10722551 10722703 -140060850 + Tigger2 DNA MER2_type 2521 2718 0 24 32 0 0 chr11 10722983 10723014 -140060539 + AT_rich Low_complexity Low_complexity 1 31 0 850 85 78 0 chr11 10723069 10723198 -140060355 - MER85 DNA T2_type 0 139 1 2754 248 42 45 chr11 10723327 10724358 -140059195 - L1ME LINE L1 -5041 1029 2 2175 115 20 7 chr11 10724533 10724829 -140058724 + AluSx SINE Alu 1 300 -12 388 307 67 105 chr11 10724829 10725543 -140058010 - L2 LINE L2 -107 3165 2456 2458 109 3 35 chr11 10725546 10725921 -140057632 + THE1B LTR MaLR 2 364 0 10527 98 32 38 chr11 10725921 10727511 -140056042 + THE1B-int LTR MaLR 1 1580 0 2400 98 0 70 chr11 10727514 10727751 -140055802 + THE1B LTR MaLR 4 205 -159 2075 121 10 14 chr11 10727751 10728048 -140055505 + AluSx SINE Alu 1 296 -16 2400 98 0 70 chr11 10728048 10728198 -140055355 + THE1B LTR MaLR 205 364 0 244 287 57 25 chr11 10728710 10728832 -140054721 - HAL1b LINE L1 -438 910 785 238 305 0 0 chr11 10728885 10728944 -140054609 - HAL1b LINE L1 -447 901 843 2185 105 0 0 chr11 10729078 10729364 -140054189 - AluSx SINE Alu -26 286 1 296 269 93 83 chr11 10729495 10729688 -140053865 + L3 LINE CR1 1219 1413 -164 322 258 206 7 chr11 10730103 10730258 -140053295 - L2 LINE L2 -542 2772 2587 807 129 0 0 chr11 10730312 10730428 -140053125 - AluJb SINE Alu -12 300 185 2293 97 0 0 chr11 10731302 10731611 -140051942 - AluY SINE Alu -2 309 1 1097 162 65 51 chr11 10731647 10731863 -140051690 + MER20 DNA MER1_type 1 219 0 466 347 50 8 chr11 10732279 10732636 -140050917 + ERVL LTR ERVL 869 1240 -4524 2340 86 3 0 chr11 10732891 10733183 -140050370 - AluSc SINE Alu -16 293 1 1750 321 83 48 chr11 10733401 10734658 -140048895 + ERVL LTR ERVL 1800 3099 -2665 2306 102 0 3 chr11 10734917 10735222 -140048331 - AluSq SINE Alu -9 304 1 743 261 74 110 chr11 10735359 10735610 -140047943 + MLT1J LTR MaLR 3 227 -284 1846 156 0 31 chr11 10735610 10735930 -140047623 - AluJb SINE Alu -2 310 1 743 261 74 110 chr11 10735930 10736206 -140047347 + MLT1J LTR MaLR 227 511 0 192 380 8 25 chr11 10736206 10736327 -140047226 - L2 LINE L2 -873 2441 2323 453 265 184 14 chr11 10737750 10737897 -140045656 - MIR3 SINE MIR -16 192 21 3227 199 88 53 chr11 10738563 10740032 -140043521 - L1MDb LINE L1 -4487 1919 407 2321 275 39 2 chr11 10740005 10740627 -140042926 - L1MDb LINE L1 -5753 656 12 * 628 111 10 0 chr11 10740645 10740744 -140042809 - L1MB7 LINE L1 -15 6169 6070 204 40 0 0 chr11 10740744 10740769 -140042784 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1629 123 0 8 chr11 10740778 10741030 -140042523 - L1PA10 LINE L1 -11 6157 5908 1372 144 35 42 chr11 10741031 10741283 -140042270 - L1MB7 LINE L1 -106 6078 5827 2081 89 3 73 chr11 10741283 10741598 -140041955 - AluY SINE Alu -18 293 1 1372 144 35 42 chr11 10741598 10741657 -140041896 - L1MB7 LINE L1 -357 5827 5769 623 241 85 66 chr11 10741648 10743130 -140040423 - L1MEc LINE L1 -4760 1636 36 * 2373 57 0 10 chr11 10743153 10743449 -140040104 - AluY SINE Alu -18 293 1 292 355 33 44 chr11 10743461 10743734 -140039819 - L2 LINE L2 -540 2774 2505 243 132 0 0 chr11 10744068 10744106 -140039447 - Alu SINE Alu -9 292 255 1064 42 0 0 chr11 10744109 10744227 -140039326 - AluSq/x SINE Alu -182 130 13 310 328 178 35 chr11 10745283 10745621 -140037932 + L3 LINE CR1 726 1111 -466 550 256 83 22 chr11 10745645 10745825 -140037728 - MIR SINE MIR -56 206 16 343 296 0 0 chr11 10745886 10745967 -140037586 - FRAM/FAM SINE Alu -88 78 1 840 116 6 110 chr11 10745968 10746141 -140037412 - L1M3 LINE L1 -500 5671 5517 855 173 105 0 chr11 10746144 10746306 -140037247 - AluJo SINE Alu -133 179 1 13143 129 59 19 chr11 10746351 10748675 -140034878 + Tigger1 DNA MER2_type 1 2418 0 334 284 45 0 chr11 10748912 10749000 -140034553 + L1ME LINE L1 5666 5757 -364 183 42 0 0 chr11 10749090 10749114 -140034439 + (TA)n Simple_repeat Simple_repeat 2 25 0 383 157 148 17 chr11 10749142 10749257 -140034296 + L1ME4a LINE L1 5989 6118 -3 1883 151 11 0 chr11 10749270 10749555 -140033998 + AluJb SINE Alu 1 288 -24 201 205 0 121 chr11 10749723 10749806 -140033747 - L2 LINE L2 -4 3268 3196 345 333 42 0 chr11 10749893 10749989 -140033564 + L2 LINE L2 3121 3220 -52 855 202 5 31 chr11 10750663 10750856 -140032697 + MER20 DNA MER1_type 32 219 0 2157 128 0 0 chr11 10751138 10751428 -140032125 + AluSx SINE Alu 1 290 -22 1322 201 58 15 chr11 10751465 10751794 -140031759 + MER2 DNA MER2_type 2 344 0 2463 60 7 0 chr11 10752297 10752597 -140030956 + AluY SINE Alu 1 302 -9 771 262 62 9 chr11 10753167 10753377 -140030176 + MIR SINE MIR 4 224 -38 376 349 0 0 chr11 10754913 10755022 -140028531 - MIR SINE MIR -68 140 32 2232 102 3 3 chr11 10755783 10756078 -140027475 - AluSp SINE Alu -18 295 1 274 341 16 0 chr11 10756637 10756763 -140026790 + L3 LINE CR1 735 862 -715 357 256 7 66 chr11 10758110 10758247 -140025306 - MLT1J1 LTR MaLR 0 446 318 688 238 150 35 chr11 10758269 10758555 -140024998 - LTR36 LTR ERV1 0 611 293 338 75 60 0 chr11 10758620 10758687 -140024866 + GA-rich Low_complexity Low_complexity 2 72 0 596 269 56 15 chr11 10758776 10758973 -140024580 - MLT1J2 LTR MaLR -245 205 1 1398 230 104 47 chr11 10759057 10759390 -140024163 + MER21B LTR ERV1 1 370 -493 1539 185 20 30 chr11 10759390 10759692 -140023861 - AluJo SINE Alu -13 299 1 1398 230 104 47 chr11 10759692 10759828 -140023725 + MER21B LTR ERV1 370 497 -366 306 263 0 42 chr11 10760098 10760216 -140023337 + L1MC/D LINE L1 5720 5832 -1976 2216 153 8 99 chr11 10760216 10760330 -140023223 + L1MB2 LINE L1 5375 5498 -685 773 213 7 13 chr11 10760330 10760485 -140023068 + FRAM SINE Alu 1 154 -12 2216 153 8 99 chr11 10760485 10760893 -140022660 + L1MB2 LINE L1 5498 5849 -334 1654 140 12 43 chr11 10760931 10760993 -140022560 + L1MB2 LINE L1 5849 5911 -260 1838 91 0 0 chr11 10760993 10761234 -140022319 + AluY SINE Alu 71 311 0 1654 140 12 43 chr11 10761234 10761499 -140022054 + L1MB2 LINE L1 5911 6166 -5 652 210 57 17 chr11 10761572 10761748 -140021805 + L1M4 LINE L1 4676 4858 -1288 2088 165 21 35 chr11 10761811 10762235 -140021318 - L1MA5 LINE L1 0 6300 5883 855 196 80 9 chr11 10762246 10762471 -140021082 + L1M4 LINE L1 4856 5096 -1050 1258 146 0 101 chr11 10762825 10762878 -140020675 + AluJb SINE Alu 83 140 -172 2357 69 3 0 chr11 10762878 10763167 -140020386 + AluSc SINE Alu 1 290 -19 241 25 0 50 chr11 10763173 10763213 -140020340 + (CAA)n Simple_repeat Simple_repeat 2 39 0 1258 146 0 101 chr11 10763213 10763399 -140020154 + AluJb SINE Alu 145 304 -8 210 259 0 0 chr11 10763532 10763590 -140019963 + (TA)n Simple_repeat Simple_repeat 1 58 0 433 264 136 13 chr11 10864784 10864939 -139918614 - MIR SINE MIR -72 190 17 432 206 112 9 chr11 10865162 10865269 -139918284 + L2 LINE L2 3196 3313 0 4727 199 30 8 chr11 10865571 10866518 -139917035 - L1P LINE L1 -5169 977 11 272 282 111 8 chr11 10867198 10867315 -139916238 + L2 LINE L2 3138 3266 -6 759 303 194 27 chr11 10868654 10868860 -139914693 + L2 LINE L2 2216 2386 -928 8437 52 1 0 chr11 10868860 10869825 -139913728 + LTR5 LTR ERVK 1 966 -3 759 303 194 27 chr11 10869825 10870241 -139913312 + L2 LINE L2 2386 2942 -372 23 0 0 0 chr11 10870420 10870443 -139913110 + AT_rich Low_complexity Low_complexity 1 23 0 614 271 96 102 chr11 10870645 10870985 -139912568 - L1ME3 LINE L1 -309 5830 5494 2917 155 9 60 chr11 10870991 10871527 -139912026 + MLT2B2 LTR ERVL 7 515 0 614 271 96 102 chr11 10871527 10871731 -139911822 - L1ME3 LINE L1 -645 5494 5290 360 0 0 0 chr11 10871906 10871946 -139911607 + (TG)n Simple_repeat Simple_repeat 2 41 0 1387 158 18 4 chr11 10871947 10872175 -139911378 - AluJo SINE Alu -39 273 43 600 153 0 9 chr11 10872275 10872386 -139911167 + LTR5 LTR ERVK 858 967 -2 317 328 146 24 chr11 10872537 10872918 -139910635 + L2 LINE L2 2638 3079 -193 360 64 0 0 chr11 10873207 10873254 -139910299 + (TGGA)n Simple_repeat Simple_repeat 1 47 0 237 139 125 14 chr11 10874982 10875054 -139908499 + MIR3 SINE MIR 5 84 -124 207 336 66 0 chr11 10876610 10876732 -139906821 - L2 LINE L2 -1 3271 3142 1656 155 8 4 chr11 10876927 10877185 -139906368 - AluJo SINE Alu -27 285 27 7451 42 3 0 chr11 10878147 10879218 -139904335 - L1PA4 LINE L1 -4 6151 5082 26 0 0 0 chr11 10879288 10879314 -139904239 + AT_rich Low_complexity Low_complexity 1 26 0 1040 92 8 0 chr11 10879384 10879515 -139904038 + AluSp SINE Alu 39 170 -143 234 0 0 0 chr11 10879850 10879876 -139903677 + (T)n Simple_repeat Simple_repeat 1 26 0 206 301 26 59 chr11 10879990 10880143 -139903410 - MIR SINE MIR -43 219 72 591 210 59 41 chr11 10880202 10880399 -139903154 + MIR SINE MIR 64 262 0 1862 122 59 0 chr11 10880406 10880676 -139902877 - AluSg SINE Alu -24 286 1 1577 214 40 81 chr11 10881114 10881329 -139902224 + HAL1b LINE L1 794 1016 -332 1805 190 0 0 chr11 10881329 10881629 -139901924 + AluJb SINE Alu 1 300 -12 1577 214 40 81 chr11 10881629 10881992 -139901561 + HAL1b LINE L1 1016 1348 0 21 36 0 0 chr11 10882805 10882833 -139900720 + AT_rich Low_complexity Low_complexity 1 28 0 1763 207 36 66 chr11 10884170 10884425 -139899128 - LTR16C LTR ERVL -2 489 253 2362 104 0 0 chr11 10884425 10884722 -139898831 - AluSx SINE Alu -15 297 1 1763 207 36 66 chr11 10884722 10884935 -139898618 - LTR16C LTR ERVL -238 253 35 1994 146 3 19 chr11 10885064 10885372 -139898181 - AluJb SINE Alu -9 303 1 670 264 31 22 chr11 10885647 10885874 -139897679 + L1M4 LINE L1 4616 4844 -1302 249 118 0 0 chr11 10885905 10885939 -139897614 - U2 snRNA snRNA -154 34 1 354 290 47 51 chr11 10886013 10886289 -139897264 + L1M4 LINE L1 4931 5205 -941 2290 112 0 3 chr11 10886879 10887183 -139896370 + AluSx SINE Alu 1 303 -9 2398 84 3 0 chr11 10887396 10887693 -139895860 + AluSx SINE Alu 1 298 -14 1283 125 22 5 chr11 10887913 10888097 -139895456 + AluSg/x SINE Alu 111 297 -15 1665 169 54 30 chr11 10888103 10888435 -139895118 - THE1C LTR MaLR -35 340 1 309 176 20 0 chr11 10888435 10888483 -139895070 - AluSp SINE Alu -121 182 134 425 137 0 68 chr11 10888491 10888542 -139895011 - MLT1B LTR MaLR -318 72 26 1745 153 85 23 chr11 10888542 10888895 -139894658 + THE1C LTR MaLR 1 375 0 425 137 0 68 chr11 10888895 10888916 -139894637 - MLT1B LTR MaLR -364 26 5 297 75 0 0 chr11 10888972 10889012 -139894541 + (TGAA)n Simple_repeat Simple_repeat 3 42 0 2193 226 48 35 chr11 10889158 10889737 -139893816 - MLT1E LTR MaLR -2 591 5 220 353 58 14 chr11 10890141 10890280 -139893273 + L2 LINE L2 3169 3313 0 1893 177 3 0 chr11 10890282 10890582 -139892971 + AluJo SINE Alu 1 301 -11 266 224 15 30 chr11 10890981 10891048 -139892505 - L2 LINE L2 0 3272 3207 2003 167 0 0 chr11 10891167 10891473 -139892080 + AluJb SINE Alu 1 306 -6 288 0 0 0 chr11 10891473 10891505 -139892048 + (TA)n Simple_repeat Simple_repeat 2 33 0 1577 171 0 32 chr11 10891538 10891819 -139891734 - AluJo SINE Alu -40 272 1 839 233 198 30 chr11 10891819 10892218 -139891335 + L3 LINE CR1 636 1101 -476 374 332 82 26 chr11 10893324 10893556 -139889997 - MLT1L LTR MaLR 0 615 371 2596 51 0 0 chr11 10898690 10898986 -139884567 + AluY SINE Alu 1 296 -15 671 164 0 64 chr11 10899058 10899198 -139884355 - FLAM_C SINE Alu 0 133 3 600 260 75 35 chr11 10900552 10900779 -139882774 - MIR SINE MIR -12 250 15 363 96 0 0 chr11 10901187 10901239 -139882314 + (TG)n Simple_repeat Simple_repeat 1 52 0 196 236 0 83 chr11 10901778 10901850 -139881703 + L2 LINE L2 3248 3313 0 1676 179 101 31 chr11 10901993 10902351 -139881202 - MLT1B LTR MaLR -3 387 5 291 273 8 83 chr11 10902812 10902933 -139880620 - MER5B DNA MER1_type -66 112 1 412 286 70 36 chr11 10904057 10904358 -139879195 + L1MC5 LINE L1 7451 7761 -200 235 127 32 48 chr11 10904392 10904455 -139879098 + A-rich Low_complexity Low_complexity 4 65 0 359 254 0 25 chr11 10904502 10904620 -139878933 + L1MC5 LINE L1 7806 7920 -41 23 54 0 0 chr11 10904687 10904724 -139878829 + AT_rich Low_complexity Low_complexity 1 37 0 1587 129 0 0 chr11 10905096 10905313 -139878240 + AluJb SINE Alu 87 303 -9 21 36 0 0 chr11 10905448 10905476 -139878077 + AT_rich Low_complexity Low_complexity 1 28 0 1764 148 16 0 chr11 10905682 10905938 -139877615 + AluJo SINE Alu 22 281 -31 215 59 0 29 chr11 10905944 10905978 -139877575 + (TAAA)n Simple_repeat Simple_repeat 3 35 0 2016 169 5 63 chr11 10906087 10906513 -139877040 + MER57A LTR ERV1 1 401 -2 698 252 191 36 chr11 10906521 10906830 -139876723 + L1MEd LINE L1 3 359 -5760 796 253 77 37 chr11 10906847 10907144 -139876409 + L1MEd LINE L1 515 823 -5296 370 259 79 79 chr11 10907238 10907282 -139876271 + L1ME LINE L1 5477 5520 -601 2346 104 0 3 chr11 10907282 10907581 -139875972 - AluSq SINE Alu -15 298 1 370 259 79 79 chr11 10907581 10907725 -139875828 + L1ME LINE L1 5519 5665 -456 1270 254 105 32 chr11 10907843 10908434 -139875119 + L1MEd LINE L1 966 1599 -4530 730 174 0 42 chr11 10908457 10908601 -139874952 - AluJo SINE Alu -174 138 1 831 236 117 34 chr11 10908618 10909063 -139874490 + L1MEd LINE L1 1647 2128 -4182 907 108 31 8 chr11 10909064 10909194 -139874359 + AluSq/x SINE Alu 1 133 -179 2204 128 0 16 chr11 10909206 10909518 -139874035 + AluSg SINE Alu 1 307 -3 210 37 0 0 chr11 10909521 10909548 -139874005 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3186 221 43 66 chr11 10909548 10909722 -139873831 + L1MEd LINE L1 2104 2280 -3849 1906 155 0 32 chr11 10909722 10910038 -139873515 + AluJb SINE Alu 1 306 -6 3186 221 43 66 chr11 10910038 10910732 -139872821 + L1MEd LINE L1 2280 2988 -3141 2027 129 4 0 chr11 10910732 10911049 -139872504 + AluSx SINE Alu 1 318 0 3186 221 43 66 chr11 10911049 10911776 -139871777 + L1MEd LINE L1 2988 3825 -2304 23 0 0 0 chr11 10912153 10912176 -139871377 + AT_rich Low_complexity Low_complexity 1 23 0 1203 273 44 9 chr11 10912232 10912687 -139870866 - L1MC4a LINE L1 -1788 6020 5550 1981 207 78 51 chr11 10912720 10913438 -139870115 + MER21B LTR ERV1 15 809 -54 261 273 68 23 chr11 10913480 10913612 -139869941 - L1MC4a LINE L1 -2267 5541 5404 * 439 317 128 29 chr11 10913601 10914177 -139869376 - L1MC4a LINE L1 -1825 4321 3669 537 16 0 0 chr11 10914177 10914239 -139869314 + (TG)n Simple_repeat Simple_repeat 1 62 0 439 317 128 29 chr11 10914239 10914319 -139869234 - L1MC4a LINE L1 -2477 3669 3598 639 285 65 5 chr11 10915252 10915466 -139868087 + MIR SINE MIR 29 255 -7 2616 111 3 6 chr11 10915466 10915828 -139867725 + THE1B LTR MaLR 1 361 -3 228 302 43 29 chr11 10915993 10916132 -139867421 + L2 LINE L2 2919 3059 -213 2313 117 0 0 chr11 10916328 10916637 -139866916 - AluSx SINE Alu -3 309 1 825 272 128 13 chr11 10917618 10917931 -139865622 + MLT1I LTR MaLR 7 355 -54 1105 213 173 16 chr11 10918246 10918658 -139864895 + MLT1F LTR MaLR 1 541 -1 1337 125 91 30 chr11 10919361 10919541 -139864012 + L1MA8 LINE L1 5976 6182 -109 8922 108 16 4 chr11 10919541 10920823 -139862730 - HSMAR2 DNA Mariner -4 1298 1 1337 125 91 30 chr11 10920823 10920938 -139862615 + L1MA8 LINE L1 6182 6289 -2 219 254 99 0 chr11 10921077 10921148 -139862405 - MIR SINE MIR -65 197 120 640 124 18 44 chr11 10921585 10921698 -139861855 + L1MB2 LINE L1 6060 6169 -2 252 344 0 0 chr11 10922036 10922126 -139861427 - L1MC4 LINE L1 -1339 6703 6614 235 303 0 22 chr11 10922137 10922226 -139861327 + L1MC4 LINE L1 6617 6703 -1339 352 307 100 0 chr11 10923420 10923560 -139859993 - MIR3 SINE MIR -22 186 33 225 0 0 0 chr11 10923954 10923979 -139859574 + (T)n Simple_repeat Simple_repeat 1 25 0 591 210 59 41 chr11 10924305 10924502 -139859051 + MIR SINE MIR 64 262 0 990 149 0 0 chr11 10924509 10924657 -139858896 - AluSg/x SINE Alu -24 288 141 1775 127 16 65 chr11 10924781 10925104 -139858449 + MLT1B LTR MaLR 84 390 0 420 312 0 8 chr11 10926094 10926219 -139857334 - L2 LINE L2 -278 2994 2871 2226 135 32 46 chr11 10926327 10926490 -139857063 - L1MC3 LINE L1 0 7785 7621 1879 183 0 0 chr11 10926490 10926790 -139856763 - AluJb SINE Alu -12 300 1 2226 135 32 46 chr11 10926790 10927064 -139856489 - L1MC3 LINE L1 -164 7621 7354 261 291 41 76 chr11 10927148 10927320 -139856233 + L2 LINE L2 2708 2873 -441 1204 176 0 82 chr11 10927338 10927616 -139855937 - AluJo SINE Alu -4 308 54 854 138 8 0 chr11 10927616 10927739 -139855814 + AluJb SINE Alu 1 124 -188 5590 37 0 0 chr11 10927742 10928755 -139854798 - L1PA4 LINE L1 -410 5745 4733 3331 33 10 0 chr11 10928755 10929143 -139854410 + L1PA4 LINE L1 5756 6150 -5 885 210 34 0 chr11 10929148 10929324 -139854229 + AluJb SINE Alu 131 312 0 385 176 47 3 chr11 10929325 10929406 -139854147 - AluJ/FLAM SINE Alu -240 62 1 529 309 72 8 chr11 10929464 10929729 -139853824 - L2 LINE L2 -776 2538 2257 848 200 19 0 chr11 10930155 10930310 -139853243 - FRAM SINE Alu -13 163 6 1660 177 20 23 chr11 10930356 10930655 -139852898 - AluJb SINE Alu -14 298 1 33449 97 12 14 chr11 10930909 10935708 -139847845 + L1P LINE L1 11 4797 -1349 232 169 0 31 chr11 10935695 10935760 -139847793 + L1MC4 LINE L1 6640 6702 -1340 * 333 207 98 0 chr11 10935769 10935851 -139847702 + L1MC4 LINE L1 6614 6703 -1339 216 97 0 0 chr11 10935851 10935882 -139847671 + (TATG)n Simple_repeat Simple_repeat 1 31 0 878 172 53 13 chr11 10935882 10936012 -139847541 + L1PA6 LINE L1 4794 4917 -1229 360 64 0 0 chr11 10936012 10936059 -139847494 + (TATG)n Simple_repeat Simple_repeat 2 48 0 6719 59 29 5 chr11 10936061 10937386 -139846167 + L1PA6 LINE L1 4799 6145 -9 878 172 53 13 chr11 10937386 10937499 -139846054 + L1PA6 LINE L1 4917 5061 -1085 374 277 63 20 chr11 10937523 10937716 -139845837 + MLT1L LTR MaLR 232 531 -84 1076 169 0 0 chr11 10937733 10937899 -139845654 - AluJ SINE Alu -13 299 134 388 304 8 24 chr11 10937927 10938052 -139845501 + MER5B DNA MER1_type 2 124 -54 774 242 0 0 chr11 10938053 10938202 -139845351 - AluJo SINE Alu -27 285 137 277 239 0 0 chr11 10938202 10938269 -139845284 + MER5B DNA MER1_type 112 178 0 745 248 129 0 chr11 10939210 10939420 -139844133 + MIR SINE MIR 26 262 0 4906 254 41 11 chr11 10939456 10940839 -139842714 + HERVL LTR ERVL 3563 5086 -678 22 35 0 0 chr11 10941432 10941461 -139842092 + AT_rich Low_complexity Low_complexity 1 29 0 433 264 136 13 chr11 10941585 10941740 -139841813 - MIR SINE MIR -72 190 17 441 206 112 9 chr11 10941963 10942070 -139841483 + L2 LINE L2 3196 3313 0 246 105 0 0 chr11 10942220 10942258 -139841295 + (GA)n Simple_repeat Simple_repeat 2 39 0 1521 85 27 0 chr11 10942356 10942579 -139840974 - L1MA8 LINE L1 -7 6284 6056 258 323 19 77 chr11 10943475 10943630 -139839923 + L2 LINE L2 3127 3272 0 24 0 0 0 chr11 10943977 10944001 -139839552 + AT_rich Low_complexity Low_complexity 1 24 0 640 152 125 0 chr11 10944001 10944113 -139839440 - AluJo SINE Alu -185 127 2 1847 176 0 22 chr11 10944491 10944964 -139838589 - AluJb SINE Alu 0 466 1 1953 154 17 0 chr11 10945043 10945335 -139838218 - AluJb SINE Alu -15 297 1 929 251 103 48 chr11 10946820 10947058 -139836495 + MLT1G LTR MaLR 4 262 -333 1698 236 137 42 chr11 10947058 10947600 -139835953 - MLT1E LTR MaLR 0 593 1 929 251 103 48 chr11 10947600 10947652 -139835901 + MLT1G LTR MaLR 262 310 -285 1081 234 5 5 chr11 10947661 10947866 -139835687 + MLT1G LTR MaLR 346 550 -40 206 323 20 20 chr11 10949472 10949571 -139833982 + MIR SINE MIR 43 141 -67 276 211 0 0 chr11 10950318 10950370 -139833183 + L2 LINE L2 3219 3270 -2 562 281 80 28 chr11 10950575 10950863 -139832690 + L1ME4a LINE L1 5600 5905 -216 449 51 0 0 chr11 10950971 10951030 -139832523 + Alu SINE Alu 243 301 -10 1027 288 94 15 chr11 10952008 10952546 -139831007 + L2 LINE L2 2725 3313 0 328 111 0 0 chr11 10952912 10952957 -139830596 - MLT2C1 LTR ERVL -2 518 474 221 180 80 0 chr11 10953015 10953065 -139830488 + GA-rich Low_complexity Low_complexity 2 55 0 1720 171 48 12 chr11 10953065 10953399 -139830154 - MLT2C1 LTR ERVL -48 349 4 1187 280 138 6 chr11 10953711 10954533 -139829020 - L2 LINE L2 -81 3232 2302 2570 111 8 13 chr11 10954940 10955317 -139828236 - THE1C LTR MaLR 0 375 1 182 361 55 6 chr11 10955701 10955884 -139827669 - L2 LINE L2 -499 2815 2624 1008 198 5 40 chr11 10956800 10957002 -139826551 - MER21B LTR ERV1 -373 490 296 203 213 43 0 chr11 10957136 10957183 -139826370 + (TATG)n Simple_repeat Simple_repeat 3 51 0 3136 176 55 105 chr11 10957232 10958157 -139825396 - L1MA10 LINE L1 -99 6235 5357 219 253 165 0 chr11 10958544 10958623 -139824930 + MIR SINE MIR 64 155 -107 553 225 9 0 chr11 10958945 10959056 -139824497 - L2 LINE L2 -2 3311 3200 275 289 10 10 chr11 10959644 10959741 -139823812 + MIR SINE MIR 41 137 -71 991 271 86 21 chr11 10960371 10960754 -139822799 + MLT1K LTR MaLR 181 588 0 1897 172 30 9 chr11 10961402 10961552 -139822001 + MER2 DNA MER2_type 1 146 -199 7221 114 46 35 chr11 10961552 10962769 -139820784 + Tigger3b DNA MER2_type 1 1231 0 1897 172 30 9 chr11 10962769 10962955 -139820598 + MER2 DNA MER2_type 146 344 -1 2347 112 0 0 chr11 10962976 10963281 -139820272 + AluSq SINE Alu 1 305 -8 30 93 0 0 chr11 10964320 10964406 -139819147 + AT_rich Low_complexity Low_complexity 1 86 0 796 100 0 17 chr11 10964538 10964658 -139818895 - L1PB4 LINE L1 -2 6154 6037 1463 192 12 51 chr11 10965116 10965449 -139818104 + L1ME2 LINE L1 5842 6161 -3 1332 198 23 0 chr11 10966180 10966438 -139817115 - MER58B DNA MER1_type 0 341 78 1550 108 0 0 chr11 10966440 10966634 -139816919 - AluSg/x SINE Alu -14 296 103 232 330 34 0 chr11 10966663 10966751 -139816802 - MER58B DNA MER1_type -250 91 1 238 291 27 63 chr11 10968073 10968191 -139815362 - MIR SINE MIR -66 142 37 329 290 97 43 chr11 10968346 10968532 -139815021 + MIR3 SINE MIR 3 198 -10 902 284 81 50 chr11 10969000 10969603 -139813950 - HAL1 LINE L1 -1885 622 1 2211 288 83 38 chr11 10969624 10970541 -139813012 + L2 LINE L2 1853 2727 -586 1096 217 159 0 chr11 10970541 10970799 -139812754 - AluJo SINE Alu -3 299 1 2211 288 83 38 chr11 10970799 10971052 -139812501 + L2 LINE L2 2727 2967 -346 1899 89 58 122 chr11 10971052 10971412 -139812141 - MER1B DNA MER1_type 0 337 1 2211 288 83 38 chr11 10971412 10971636 -139811917 + L2 LINE L2 2967 3313 0 2374 96 0 0 chr11 10972763 10973066 -139810487 - AluSc SINE Alu -6 303 1 1775 100 93 7 chr11 10973786 10974055 -139809498 + AluSx SINE Alu 1 292 -20 1544 186 24 17 chr11 10974144 10974435 -139809118 - AluJo SINE Alu -19 293 1 2147 92 43 0 chr11 10975720 10976002 -139807551 - AluSc SINE Alu -15 294 1 273 254 59 67 chr11 10976271 10976580 -139806973 - Charlie1 DNA MER1_type -1027 1734 1378 31565 105 25 55 chr11 10978013 10984336 -139799217 - L1PA7 LINE L1 -14 6140 12 267 281 45 0 chr11 10984349 10984438 -139799115 + MER112 DNA MER1_type 164 256 -4 499 207 121 35 chr11 10984929 10985103 -139798450 - ORSL DNA AcHobo -76 199 11 693 283 105 41 chr11 10985332 10985721 -139797832 - MLT1K LTR MaLR -10 578 165 192 194 129 16 chr11 10985989 10986051 -139797502 - MIR SINE MIR -69 193 125 180 308 0 0 chr11 10986060 10986112 -139797441 - MIR SINE MIR -15 247 196 237 268 7 80 chr11 10986139 10986277 -139797276 - LTR67 LTR ERVL -4 553 426 282 184 0 0 chr11 10986404 10986453 -139797100 - MLT1K LTR MaLR -339 249 201 1549 238 118 9 chr11 10986600 10987042 -139796511 - LTR33 LTR ERVL -31 490 1 466 314 7 7 chr11 10987053 10987193 -139796360 - MIR SINE MIR -118 144 5 778 280 71 4 chr11 10987789 10988028 -139795525 - MIR SINE MIR 0 262 8 396 194 71 51 chr11 10988380 10988478 -139795075 + MLT1J2 LTR MaLR 307 406 -44 3627 119 22 8 chr11 10988502 10989088 -139794465 - L1MA3 LINE L1 -2 6303 5710 8014 215 36 28 chr11 10989432 10991606 -139791947 + L1M4 LINE L1 2183 4374 -1772 7129 193 23 20 chr11 10991814 10994264 -139789289 + L1MB7 LINE L1 3709 6165 -19 1856 174 3 7 chr11 10994453 10994752 -139788801 + AluJb SINE Alu 15 312 0 2628 118 3 3 chr11 10995330 10995694 -139787859 - THE1B LTR MaLR 0 364 1 1210 228 55 78 chr11 10995969 10996610 -139786943 - L1M4 LINE L1 -2447 3699 3074 830 147 0 23 chr11 10996656 10996785 -139786768 - FLAM_C SINE Alu -17 126 1 325 195 0 122 chr11 10996786 10996828 -139786725 - L1M4 LINE L1 -3059 3087 3041 2227 113 3 0 chr11 10996828 10997130 -139786423 - AluSq SINE Alu -10 303 1 325 195 0 122 chr11 10997130 10997210 -139786343 - L1M4 LINE L1 -3105 3041 2980 254 257 119 0 chr11 10998029 10998130 -139785423 - L1ME4a LINE L1 -195 5926 5814 517 279 40 35 chr11 10999097 10999298 -139784255 + LTR33 LTR ERVL 320 521 0 298 265 111 8 chr11 11000338 11000455 -139783098 + L2 LINE L2 3138 3266 -6 243 295 0 0 chr11 11001090 11001151 -139782402 + MLT1J LTR MaLR 229 289 -222 2810 3 0 16 chr11 11001160 11001469 -139782084 - AluYb8 SINE Alu -14 304 1 430 214 152 45 chr11 11001533 11001711 -139781842 + MLT1J LTR MaLR 304 500 -11 481 202 40 8 chr11 11002355 11002479 -139781074 - L1MB4 LINE L1 0 6180 6053 23 33 0 0 chr11 11002485 11002515 -139781038 + AT_rich Low_complexity Low_complexity 1 30 0 521 98 24 0 chr11 11002515 11002597 -139780956 - L1PA16 LINE L1 -4 6162 6079 204 206 48 16 chr11 11004697 11004760 -139778793 + G-rich Low_complexity Low_complexity 3 67 0 2597 236 143 39 chr11 11004840 11005570 -139777983 + Charlie7 DNA MER1_type 32 931 -1681 2337 89 0 16 chr11 11005570 11005874 -139777679 + AluSx SINE Alu 1 299 -13 2597 236 143 39 chr11 11005874 11006311 -139777242 + Charlie7 DNA MER1_type 931 1321 -1291 677 296 126 22 chr11 11006389 11006747 -139776806 - Charlie7 DNA MER1_type -2217 395 1 2363 227 115 50 chr11 11006942 11007279 -139776274 + Charlie7 DNA MER1_type 1345 1659 -953 414 57 0 0 chr11 11007279 11007332 -139776221 + (CA)n Simple_repeat Simple_repeat 2 54 0 2363 227 115 50 chr11 11007332 11008111 -139775442 + Charlie7 DNA MER1_type 1659 2533 -79 207 291 97 63 chr11 11008268 11008856 -139774697 - L2 LINE L2 -828 2486 1879 432 0 0 0 chr11 11008901 11008949 -139774604 + (TG)n Simple_repeat Simple_repeat 2 49 0 324 0 0 0 chr11 11009003 11009039 -139774514 + (TG)n Simple_repeat Simple_repeat 2 37 0 27 73 0 0 chr11 11009543 11009598 -139773955 + GC_rich Low_complexity Low_complexity 1 55 0 197 211 35 0 chr11 11011252 11011309 -139772244 + L2 LINE L2 3255 3313 0 712 279 68 13 chr11 11011400 11011605 -139771948 - MIR SINE MIR -10 252 31 2334 104 0 3 chr11 11011605 11011914 -139771639 - AluSx SINE Alu -4 308 1 712 279 68 13 chr11 11011914 11011945 -139771608 - MIR SINE MIR -231 31 3 336 248 178 0 chr11 11012015 11012116 -139771437 - L2 LINE L2 0 3313 3195 2192 118 3 19 chr11 11012236 11012550 -139771003 - AluSc SINE Alu 0 309 1 578 156 91 65 chr11 11013112 11013266 -139770287 + MER103 DNA DNA 1 158 -8 1761 175 13 13 chr11 11015633 11015941 -139767612 - AluJb SINE Alu -4 308 1 1881 140 18 0 chr11 11016282 11016554 -139766999 + AluJb SINE Alu 6 282 -30 390 235 0 12 chr11 11016815 11016900 -139766653 - FLAM_A SINE Alu -27 106 23 312 178 0 96 chr11 11016888 11016961 -139766592 + AluJb SINE Alu 88 153 -149 * 372 224 84 19 chr11 11018048 11018155 -139765398 - MIR3 SINE MIR -6 202 89 191 250 17 0 chr11 11018438 11018498 -139765055 + MIR SINE MIR 2 62 -200 372 233 60 21 chr11 11018501 11018647 -139764906 + MIR SINE MIR 12 160 -63 363 81 70 0 chr11 11018677 11018763 -139764790 + (TA)n Simple_repeat Simple_repeat 1 92 0 1880 161 0 17 chr11 11018763 11019062 -139764491 - AluJb SINE Alu -18 294 1 2187 124 0 7 chr11 11019073 11019372 -139764181 - AluSx SINE Alu -15 297 1 247 196 0 0 chr11 11019407 11019458 -139764095 + GA-rich Low_complexity Low_complexity 2 52 0 537 278 124 51 chr11 11020751 11020883 -139762670 - L2 LINE L2 -30 3283 3162 1132 236 167 5 chr11 11020883 11021332 -139762221 - LTR33A LTR ERVL 0 523 2 537 278 124 51 chr11 11021332 11021698 -139761855 - L2 LINE L2 -151 3162 2749 707 213 46 51 chr11 11022648 11022845 -139760708 + MIR SINE MIR 64 259 -3 714 328 25 4 chr11 11022892 11023127 -139760426 - MIR SINE MIR -17 245 6 738 294 85 4 chr11 11023600 11023835 -139759718 + MIR SINE MIR 9 262 0 30647 98 18 61 chr11 11024088 11024643 -139758910 + L1PA7 LINE L1 12 589 -5565 2323 101 3 0 chr11 11024643 11024941 -139758612 + AluSq SINE Alu 1 299 -14 30647 98 18 61 chr11 11024941 11028421 -139755132 + L1PA7 LINE L1 589 3654 -2500 2815 3 0 3 chr11 11028421 11028721 -139754832 + AluYa5 SINE Alu 1 299 -12 30647 98 18 61 chr11 11028721 11031119 -139752434 + L1PA7 LINE L1 3654 6154 0 2034 146 0 0 chr11 11031385 11031679 -139751874 + AluSx SINE Alu 1 294 -18 1777 164 0 0 chr11 11031689 11031958 -139751595 + AluSx SINE Alu 39 307 -5 210 284 62 119 chr11 11032718 11032894 -139750659 + L2 LINE L2 3057 3222 -50 202 313 24 12 chr11 11033530 11033613 -139749940 + L3 LINE CR1 1305 1388 -189 2379 141 58 22 chr11 11033666 11034078 -139749475 - MSTA LTR MaLR 0 428 2 2057 213 87 9 chr11 11034244 11034775 -139748778 + MLT1E2 LTR MaLR 96 626 0 235 168 0 178 chr11 11035433 11035540 -139748013 - L2 LINE L2 -588 2726 2639 616 291 171 0 chr11 11035696 11035906 -139747647 - MIR SINE MIR -15 247 2 675 261 52 36 chr11 11038937 11039243 -139744310 - L1MC4a LINE L1 -1763 6045 5735 326 229 219 0 chr11 11040389 11040485 -139743068 + MIR SINE MIR 28 144 -118 3197 161 51 4 chr11 11040859 11041393 -139742160 - MER68 LTR ERV1 0 562 4 2007 137 3 44 chr11 11041858 11042173 -139741380 - AluJb SINE Alu -10 302 1 764 252 56 39 chr11 11042273 11042507 -139741046 + MIR SINE MIR 20 257 -5 264 283 164 45 chr11 11043369 11043546 -139740007 - MIR SINE MIR 0 262 65 683 237 97 43 chr11 11043832 11044111 -139739442 - L2 LINE L2 -1 3312 3019 1850 155 14 7 chr11 11044602 11044892 -139738661 - AluSx SINE Alu -20 292 1 298 259 98 27 chr11 11045472 11045584 -139737969 + L3 LINE CR1 1450 1569 -8 853 76 18 1 chr11 11047077 11047210 -139736343 - L1PA10 LINE L1 -196 5972 5855 1007 49 16 0 chr11 11047210 11047330 -139736223 + L1PA10 LINE L1 6042 6166 -2 2243 122 0 0 chr11 11049033 11049328 -139734225 - AluSq SINE Alu -18 295 1 275 225 10 4 chr11 11049687 11049803 -139733750 + MER117 DNA MER1_type 2 155 -42 1596 316 60 17 chr11 11050794 11051446 -139732107 - L2 LINE L2 -588 2726 2047 325 305 148 0 chr11 11051932 11052060 -139731493 - L2 LINE L2 -1 3312 3166 229 295 156 49 chr11 11052218 11052628 -139730925 - L2 LINE L2 -337 2977 2524 323 313 84 8 chr11 11053076 11053209 -139730344 + MIR SINE MIR 19 160 -65 3506 158 16 6 chr11 11053242 11053863 -139729690 + L1MB4 LINE L1 5554 6180 0 2360 97 0 3 chr11 11055264 11055562 -139727991 - AluSg1 SINE Alu -12 297 1 2109 115 33 13 chr11 11056886 11057190 -139726363 - AluSg SINE Alu 0 310 1 382 254 52 37 chr11 11057201 11057335 -139726218 + MIR SINE MIR 90 225 -37 206 274 32 0 chr11 11057946 11058008 -139725545 + (CATG)n Simple_repeat Simple_repeat 1 64 0 317 297 55 0 chr11 11058347 11058438 -139725115 - L2 LINE L2 -5 3308 3213 428 340 53 5 chr11 11058661 11058849 -139724704 + MIR3 SINE MIR 1 197 -11 450 325 143 51 chr11 11059390 11059818 -139723735 - L1ME4a LINE L1 0 6121 5655 218 283 0 0 chr11 11060314 11060360 -139723193 + polypyrimidine Low_complexity Low_complexity 4 49 0 377 239 107 50 chr11 11060811 11060970 -139722583 + MIR SINE MIR 65 232 -30 1214 190 145 21 chr11 11061163 11061536 -139722017 - Charlie1 DNA MER1_type 0 2761 2343 232 310 17 0 chr11 11061536 11061594 -139721959 - Charlie1 DNA MER1_type -2702 59 1 488 16 16 0 chr11 11061791 11061852 -139721701 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 180 366 76 8 chr11 11061911 11062042 -139721511 - L2 LINE L2 -1756 1558 1419 253 250 29 0 chr11 11062379 11062447 -139721106 - L2 LINE L2 -30 3242 3173 871 235 171 7 chr11 11062494 11062775 -139720778 + L2 LINE L2 2986 3312 -1 258 227 182 11 chr11 11064145 11064233 -139719320 + MIR3 SINE MIR 99 201 -7 230 229 62 0 chr11 11064370 11064418 -139719135 + MIR3 SINE MIR 152 202 -6 * 258 328 117 8 chr11 11064416 11064544 -139719009 - MIR3 SINE MIR -51 157 16 189 0 0 0 chr11 11064571 11064592 -139718961 + (TG)n Simple_repeat Simple_repeat 2 22 0 269 235 0 0 chr11 11064753 11064804 -139718749 + L2 LINE L2 3263 3313 0 2293 129 6 24 chr11 11068822 11069163 -139714390 + MER1B DNA MER1_type 2 336 -1 222 217 0 22 chr11 11070309 11070355 -139713198 - L3b LINE CR1 -10 1573 1529 30 0 0 0 chr11 11070427 11070457 -139713096 + AT_rich Low_complexity Low_complexity 1 30 0 183 288 75 12 chr11 11070710 11070790 -139712763 - MIR SINE MIR -118 144 60 2173 113 14 0 chr11 11071353 11071645 -139711908 - AluSx SINE Alu -10 302 7 315 207 83 33 chr11 11072796 11072917 -139710636 - HAL1 LINE L1 0 2507 2381 447 261 78 22 chr11 11073006 11073198 -139710355 - L1MC4a LINE L1 -325 5796 5682 4422 232 65 27 chr11 11073915 11075452 -139708101 + L1ME4a LINE L1 37 1632 -4764 1101 213 77 0 chr11 11075468 11075806 -139707747 + L1ME4a LINE L1 4302 4665 -1550 * 1591 220 28 8 chr11 11075801 11076201 -139707352 + L1ME4a LINE L1 5595 6002 -231 262 229 30 0 chr11 11076206 11076283 -139707270 + L1MA10 LINE L1 6074 6148 -14 214 292 31 0 chr11 11076309 11076374 -139707179 + MIR3 SINE MIR 133 199 -9 2369 129 5 15 chr11 11077169 11077551 -139706002 - Tigger3b DNA MER2_type -14 1217 840 1263 97 88 23 chr11 11077551 11077767 -139705786 + MER30 DNA MER1_type 1 230 0 * 4392 105 80 26 chr11 11077767 11078569 -139704984 - Tigger3b DNA MER2_type -384 847 3 195 229 82 49 chr11 11078689 11078750 -139704803 - L2 LINE L2 -51 3221 3159 329 231 0 22 chr11 11079056 11079147 -139704406 + L1ME4a LINE L1 6101 6189 -1 183 307 0 93 chr11 11079167 11079242 -139704311 + L2 LINE L2 3188 3255 -58 223 318 15 0 chr11 11079682 11079748 -139703805 - L2 LINE L2 -653 2661 2595 710 309 93 36 chr11 11080073 11080406 -139703147 + L3 LINE CR1 988 1339 -238 669 238 108 36 chr11 11080418 11080641 -139702912 - MIR SINE MIR 0 262 24 243 356 0 11 chr11 11080690 11080777 -139702776 + L3 LINE CR1 1371 1456 -121 391 266 85 0 chr11 11080831 11080925 -139702628 + MER5A DNA MER1_type 10 111 -78 472 302 117 9 chr11 11080957 11081179 -139702374 + MIR SINE MIR 6 251 -11 2195 53 49 11 chr11 11081704 11081989 -139701564 + AluY SINE Alu 1 296 -15 2308 94 3 0 chr11 11083814 11084112 -139699441 + AluY SINE Alu 1 299 -12 1596 251 72 70 chr11 11084428 11085304 -139698249 - L2 LINE L2 -4 3309 2419 465 307 76 76 chr11 11086067 11086331 -139697222 - L2 LINE L2 -5 3267 3004 498 276 105 0 chr11 11086363 11086591 -139696962 + MLT1L LTR MaLR 1 252 -363 219 390 45 32 chr11 11086904 11087058 -139696495 - L2 LINE L2 -560 2754 2599 190 224 271 35 chr11 11087064 11087149 -139696404 + L2 LINE L2 3163 3267 -5 23 54 0 0 chr11 11088085 11088122 -139695431 + AT_rich Low_complexity Low_complexity 1 37 0 2376 78 3 0 chr11 11088408 11088701 -139694852 + AluSg SINE Alu 1 294 -16 378 0 0 0 chr11 11089809 11089851 -139693702 + (CA)n Simple_repeat Simple_repeat 2 43 0 234 298 0 0 chr11 11090287 11090344 -139693209 + L2 LINE L2 3208 3264 -8 240 35 0 0 chr11 11091790 11091819 -139691734 + (CA)n Simple_repeat Simple_repeat 2 30 0 610 318 80 29 chr11 11091873 11092112 -139691441 - MIR SINE MIR -10 252 2 26 0 0 0 chr11 11092182 11092208 -139691345 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr11 11092528 11092550 -139691003 + AT_rich Low_complexity Low_complexity 1 22 0 190 330 171 0 chr11 11092811 11092899 -139690654 + L3 LINE CR1 505 607 -970 504 312 42 89 chr11 11093272 11093676 -139689877 - L2 LINE L2 -37 3235 2851 367 293 249 9 chr11 11093699 11093928 -139689625 + L3 LINE CR1 636 919 -658 693 125 21 97 chr11 11093930 11094074 -139689479 - FLAM_C SINE Alu -10 133 1 668 325 183 32 chr11 11094091 11094620 -139688933 + L3 LINE CR1 934 1542 -35 2152 220 21 14 chr11 11094824 11095337 -139688216 - MER34 LTR ERV1 0 542 26 227 204 0 23 chr11 11095920 11095964 -139687589 + L2 LINE L2 3227 3269 -3 214 289 0 0 chr11 11099093 11099131 -139684422 - L2 LINE L2 -25 3247 3210 232 312 87 33 chr11 11099150 11099242 -139684311 - MIR SINE MIR -102 106 12 730 286 57 0 chr11 11099332 11099577 -139683976 - MIR SINE MIR -2 260 2 211 369 10 19 chr11 11099590 11099693 -139683860 + L2 LINE L2 3198 3299 -14 4163 202 43 43 chr11 11099834 11100193 -139683360 + L1ME1 LINE L1 4106 4464 -1702 2448 130 70 2 chr11 11100193 11100607 -139682946 + L1PA16 LINE L1 5718 6159 -7 4163 202 43 43 chr11 11100607 11101107 -139682446 + L1ME1 LINE L1 4464 4963 -1203 8440 166 117 11 chr11 11101107 11102694 -139680859 - MER52A LTR ERV1 0 1755 1 4163 202 43 43 chr11 11102694 11103899 -139679654 + L1ME1 LINE L1 4963 6161 -5 25 51 0 0 chr11 11104073 11104112 -139679441 + AT_rich Low_complexity Low_complexity 1 39 0 2220 96 0 10 chr11 11104579 11104899 -139678654 - AluSc SINE Alu 0 309 1 611 303 23 27 chr11 11105045 11105240 -139678313 - MIR3 SINE MIR -11 197 2 2544 60 0 0 chr11 11107354 11107654 -139675899 - AluY SINE Alu -11 300 1 1263 252 62 84 chr11 11108453 11109001 -139674552 + MLT1F1 LTR MaLR 7 567 0 1361 189 4 19 chr11 11109406 11109666 -139673887 - LTR26B LTR ERV1 0 531 276 4490 172 54 32 chr11 11109668 11110692 -139672861 + L1MC3 LINE L1 6740 7785 0 854 214 80 5 chr11 11111128 11111329 -139672224 + MIR SINE MIR 23 238 -24 348 310 239 6 chr11 11111653 11111988 -139671565 + L3 LINE CR1 1052 1464 -113 2152 116 0 0 chr11 11111996 11112281 -139671272 + AluSx SINE Alu 3 287 -25 367 204 65 21 chr11 11112298 11112391 -139671162 - MER5A DNA MER1_type -55 134 38 222 174 0 0 chr11 11112702 11112748 -139670805 + (TG)n Simple_repeat Simple_repeat 1 46 0 247 306 46 10 chr11 11114356 11114552 -139669001 - L1ME LINE L1 -383 5738 5536 21 0 0 0 chr11 11114648 11114669 -139668884 + AT_rich Low_complexity Low_complexity 1 21 0 428 302 0 0 chr11 11114757 11114873 -139668680 + MIR SINE MIR 75 190 -72 612 294 137 53 chr11 11115516 11116156 -139667397 + L2 LINE L2 2579 3271 -1 460 316 117 46 chr11 11116305 11116912 -139666641 - L2 LINE L2 -314 2999 2336 249 329 47 12 chr11 11116943 11117028 -139666525 + MIR SINE MIR 45 132 -76 275 220 159 15 chr11 11117058 11117190 -139666363 + HAL1b LINE L1 987 1137 -211 188 324 29 0 chr11 11117347 11117415 -139666138 - L2 LINE L2 -999 2315 2246 233 228 234 18 chr11 11117825 11117992 -139665561 - HAL1b LINE L1 -211 1137 935 201 158 0 0 chr11 11118003 11118041 -139665512 + T-rich Low_complexity Low_complexity 1 38 0 315 278 52 35 chr11 11118063 11118236 -139665317 - L1ME4a LINE L1 -12 6109 5934 1967 89 48 10 chr11 11118243 11118534 -139665019 - AluY SINE Alu -9 302 1 403 330 22 60 chr11 11118806 11118988 -139664565 + MIR3 SINE MIR 5 179 -29 309 272 133 63 chr11 11119406 11119509 -139664044 + MIR SINE MIR 3 122 -140 2587 56 13 0 chr11 11119509 11119815 -139663738 - AluY SINE Alu -1 310 1 309 272 133 63 chr11 11119815 11119869 -139663684 + MIR SINE MIR 122 171 -91 1332 183 103 3 chr11 11119869 11120169 -139663384 - MER2 DNA MER2_type -15 330 1 689 286 34 49 chr11 11121510 11121763 -139661790 + MIR SINE MIR 2 249 -13 705 165 8 16 chr11 11122229 11122356 -139661197 - FLAM_A SINE Alu -5 137 12 898 185 14 28 chr11 11122379 11122595 -139660958 - AluSp SINE Alu -12 301 89 1167 84 60 0 chr11 11122697 11122864 -139660689 - L1PA7 LINE L1 -14 6140 5964 21 0 0 0 chr11 11122899 11122920 -139660633 + AT_rich Low_complexity Low_complexity 1 21 0 483 194 0 11 chr11 11122924 11123017 -139660536 + MIR SINE MIR 63 154 -108 202 188 0 0 chr11 11123249 11123281 -139660272 + polypyrimidine Low_complexity Low_complexity 5 36 0 589 323 180 7 chr11 11123281 11123835 -139659718 - L2 LINE L2 -8 3264 2613 234 217 0 0 chr11 11124308 11124354 -139659199 - MIR3 SINE MIR -3 205 160 268 273 0 0 chr11 11126406 11126461 -139657092 - L2 LINE L2 -8 3264 3210 752 301 38 15 chr11 11127197 11127459 -139656094 + Charlie8 DNA MER1_type 18 285 -2132 280 203 14 14 chr11 11127518 11127587 -139655966 + Charlie8 DNA MER1_type 2340 2408 -9 486 0 0 0 chr11 11127911 11127965 -139655588 + (GGAA)n Simple_repeat Simple_repeat 1 54 0 378 250 67 61 chr11 11127977 11128200 -139655353 - MIR SINE MIR -13 249 19 1089 46 0 0 chr11 11129201 11129331 -139654222 - L1PA5 LINE L1 -429 5726 5597 3534 48 5 0 chr11 11129331 11129762 -139653791 + L1PA5 LINE L1 5719 6153 -1 5063 125 67 57 chr11 11129805 11130589 -139652964 - MER21A LTR ERV1 0 931 135 2256 113 0 3 chr11 11130589 11130890 -139652663 + AluSx SINE Alu 1 300 -12 5063 125 67 57 chr11 11130890 11131011 -139652542 - MER21A LTR ERV1 -796 135 17 1354 142 8 25 chr11 11131163 11131403 -139652150 - AluSp SINE Alu -77 236 1 2188 124 0 0 chr11 11131404 11131703 -139651850 - AluSx SINE Alu -13 299 1 239 240 128 8 chr11 11132061 11132186 -139651367 + MIR SINE MIR 120 259 -3 249 355 0 11 chr11 11132338 11132431 -139651122 + MIR SINE MIR 19 110 -152 502 275 116 9 chr11 11132526 11132759 -139650794 + MARNA DNA Mariner 261 518 -68 801 169 0 0 chr11 11133313 11133437 -139650116 + FLAM_C SINE Alu 3 126 -17 1980 190 87 3 chr11 11135328 11135707 -139647846 - MLT1E2 LTR MaLR 0 626 216 469 136 57 23 chr11 11135731 11135819 -139647734 - AluJb SINE Alu -24 288 198 2553 59 7 0 chr11 11135831 11136134 -139647419 - AluY SINE Alu -5 306 2 486 169 124 90 chr11 11136135 11136312 -139647241 - MLT1E2 LTR MaLR -348 157 1 3238 127 91 2 chr11 11136544 11137135 -139646418 - L1MA5A LINE L1 0 6297 5654 404 291 40 29 chr11 11137783 11138047 -139645506 - MLT1J2 LTR MaLR 0 450 155 215 344 117 23 chr11 11139640 11139768 -139643785 - L2 LINE L2 -16 3256 3117 678 244 27 45 chr11 11140096 11140317 -139643236 + MIR SINE MIR 21 237 -25 249 296 112 65 chr11 11141971 11142140 -139641413 + MER5B DNA MER1_type 1 177 -1 325 324 14 14 chr11 11142552 11142697 -139640856 + CT-rich Low_complexity Low_complexity 2 146 0 201 306 16 0 chr11 11146286 11146348 -139637205 + L2 LINE L2 3209 3271 -1 382 319 84 51 chr11 11147663 11147969 -139635584 - L2 LINE L2 -14 3299 2974 2226 99 14 0 chr11 11147969 11148253 -139635300 + AluSx SINE Alu 1 288 -24 382 319 84 51 chr11 11148253 11148360 -139635193 - L2 LINE L2 -339 2974 2872 * 1224 301 163 18 chr11 11148354 11149390 -139634163 - L2 LINE L2 -951 2363 1178 342 0 0 0 chr11 11149844 11149882 -139633671 + (TA)n Simple_repeat Simple_repeat 2 39 0 372 274 210 14 chr11 11149968 11150187 -139633366 + MIR SINE MIR 1 262 0 195 327 0 0 chr11 11150845 11150897 -139632656 - MIR SINE MIR -171 91 40 292 258 113 0 chr11 11150949 11151046 -139632507 - MIR SINE MIR -63 145 38 186 277 0 0 chr11 11151506 11151553 -139632000 + L2 LINE L2 3006 3052 -220 2372 103 0 0 chr11 11151598 11151899 -139631654 - AluSx SINE Alu -11 301 1 780 227 22 16 chr11 11153063 11153248 -139630305 + MIR SINE MIR 64 249 -13 1872 140 7 26 chr11 11153523 11153830 -139629723 - AluJb SINE Alu -11 301 1 216 365 24 0 chr11 11153948 11154033 -139629520 + L2 LINE L2 3088 3174 -98 189 0 0 0 chr11 11154602 11154623 -139628930 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 980 88 8 0 chr11 11154623 11154748 -139628805 - AluSg1 SINE Alu -183 126 1 692 249 116 37 chr11 11155959 11156313 -139627240 + MLT1L LTR MaLR 6 387 -228 390 194 187 52 chr11 11157329 11157484 -139626069 - MER5B DNA MER1_type -1 177 2 360 302 99 39 chr11 11157893 11158125 -139625428 - L1ME4a LINE L1 -2 6119 5874 342 271 52 0 chr11 11158162 11158258 -139625295 - L1ME4a LINE L1 -324 5797 5697 2018 146 7 0 chr11 11160301 11160595 -139622958 - AluSx SINE Alu -16 296 1 3037 128 15 2 chr11 11161069 11161546 -139622007 - L1PA13 LINE L1 -3 6160 5678 1373 283 59 50 chr11 11161550 11162162 -139621391 - L1MEd LINE L1 -4653 1657 1052 856 255 60 82 chr11 11162162 11162577 -139620976 - MLT1I LTR MaLR -3 406 1 1373 283 59 50 chr11 11162577 11162702 -139620851 - L1MEd LINE L1 -5258 1052 930 1567 150 6 104 chr11 11162702 11163028 -139620525 - AluJo SINE Alu -18 294 1 1373 283 59 50 chr11 11163028 11163288 -139620265 - L1MEd LINE L1 -5380 930 578 873 304 88 23 chr11 11163366 11163797 -139619756 - L1MEd LINE L1 -5655 464 6 252 275 110 0 chr11 11163810 11163919 -139619634 + L1P LINE L1 5269 5389 -762 338 288 108 36 chr11 11163923 11164173 -139619380 + L1ME LINE L1 5411 5678 -443 239 317 117 0 chr11 11164580 11164700 -139618853 + L2 LINE L2 3139 3272 0 332 282 71 18 chr11 11165149 11165319 -139618234 + L2 LINE L2 2580 2758 -556 281 325 41 35 chr11 11165437 11165606 -139617947 + L2 LINE L2 2921 3090 -182 343 326 39 48 chr11 11165716 11165946 -139617607 + L2 LINE L2 2575 2802 -512 252 321 19 28 chr11 11166848 11166954 -139616599 + MER94 DNA DNA 17 121 -13 325 308 14 14 chr11 11167719 11167862 -139615691 - MIR SINE MIR -85 177 35 497 236 61 14 chr11 11168149 11168297 -139615256 + MER103 DNA DNA 10 164 -2 1874 146 43 15 chr11 11168682 11169010 -139614543 - MER1B DNA MER1_type 0 337 1 1530 194 36 47 chr11 11169012 11169372 -139614181 + MLT1A1 LTR MaLR 10 365 0 624 282 107 0 chr11 11170824 11171040 -139612513 - MIR SINE MIR -15 247 9 948 173 6 45 chr11 11172416 11172595 -139610958 - AluJb SINE Alu -138 174 3 2052 166 80 13 chr11 11172773 11173250 -139610303 - L1M4 LINE L1 -751 5395 4887 638 174 0 35 chr11 11173462 11173577 -139609976 + AluJo SINE Alu 37 147 -165 217 238 95 0 chr11 11173577 11173640 -139609913 - MIR3 SINE MIR -130 78 10 377 303 62 28 chr11 11174093 11174309 -139609244 - MIR SINE MIR -18 244 16 503 293 185 48 chr11 11174602 11175120 -139608433 - L3 LINE CR1 -235 1342 754 401 337 87 5 chr11 11175254 11175450 -139608103 + L3 LINE CR1 1357 1568 -9 1095 278 142 29 chr11 11177194 11177943 -139605610 + HAL1b LINE L1 66 898 -450 1878 240 42 20 chr11 11177945 11178491 -139605062 + MER74B LTR ERVL 55 612 -10 2306 93 6 3 chr11 11178537 11178880 -139604673 + L1P LINE L1 4571 4914 -1232 199 133 0 0 chr11 11178982 11179012 -139604541 + MIR SINE MIR 112 141 -67 1779 164 27 3 chr11 11179139 11179468 -139604085 + L1MB3 LINE L1 5845 6181 -2 1742 137 22 30 chr11 11179843 11180114 -139603439 - AluJb SINE Alu -22 290 22 308 219 16 0 chr11 11180149 11180213 -139603340 - L2 LINE L2 0 3313 3249 234 0 0 0 chr11 11180213 11180239 -139603314 + (CA)n Simple_repeat Simple_repeat 2 27 0 596 301 107 10 chr11 11180268 11180474 -139603079 - MIR SINE MIR -1 261 36 314 223 165 39 chr11 11185541 11185644 -139597909 - MIR SINE MIR -126 136 21 1052 71 0 0 chr11 11187705 11187832 -139595721 - AluSg/x SINE Alu -8 304 178 1153 226 167 15 chr11 11188197 11188599 -139594954 + MLT1K LTR MaLR 126 588 0 336 300 80 89 chr11 11188663 11188900 -139594653 + L2 LINE L2 2945 3179 -93 2313 118 7 0 chr11 11189473 11189823 -139593730 - AluSx SINE Alu 0 352 1 718 165 83 0 chr11 11189898 11190031 -139593522 + MER5A DNA MER1_type 46 189 0 231 197 105 0 chr11 11190033 11190109 -139593444 + LTR37B LTR ERV1 115 198 -270 * 776 256 47 24 chr11 11190083 11190400 -139593153 + LTR37B LTR ERV1 88 452 -16 2659 51 0 3 chr11 11190400 11190712 -139592841 - AluY SINE Alu 0 311 1 776 256 47 24 chr11 11190712 11190726 -139592827 + LTR37B LTR ERV1 452 464 -4 2782 105 50 121 chr11 11191549 11192091 -139591462 - L1MA9 LINE L1 -5 6307 5817 297 0 0 0 chr11 11192091 11192124 -139591429 + (TG)n Simple_repeat Simple_repeat 2 34 0 2782 105 50 121 chr11 11192124 11192228 -139591325 - L1MA9 LINE L1 -495 5817 5707 379 206 235 42 chr11 11193346 11193496 -139590057 + MIR SINE MIR 16 188 -74 24 0 0 0 chr11 11193530 11193554 -139589999 + AT_rich Low_complexity Low_complexity 1 24 0 1415 183 12 20 chr11 11193562 11193814 -139589739 - AluJo SINE Alu -62 250 1 338 282 91 92 chr11 11193897 11194402 -139589151 - L2 LINE L2 -6 3266 2741 404 301 120 0 chr11 11195471 11195654 -139587899 + Charlie8 DNA MER1_type 1 205 -2212 2240 124 7 0 chr11 11196250 11196557 -139586996 - AluSx SINE Alu -3 309 1 351 266 13 0 chr11 11197261 11197340 -139586213 - L2 LINE L2 -1 3271 3192 563 234 174 12 chr11 11198102 11198269 -139585284 + MIR SINE MIR 7 200 -62 387 167 65 37 chr11 11198275 11198383 -139585170 - MER53 DNA DNA 0 189 79 564 194 97 0 chr11 11198398 11198501 -139585052 - FLAM_A SINE Alu -29 113 1 183 311 256 0 chr11 11199146 11199236 -139584317 - MIR SINE MIR -107 155 43 271 252 63 54 chr11 11199937 11200048 -139583505 + MIR SINE MIR 81 192 -70 2478 47 3 44 chr11 11200220 11200537 -139583016 + AluY SINE Alu 1 304 -7 195 146 0 0 chr11 11201050 11201091 -139582462 + (TCCA)n Simple_repeat Simple_repeat 2 42 0 199 313 54 54 chr11 11201091 11201203 -139582350 - L2 LINE L2 -24 3248 3137 421 273 41 8 chr11 11201523 11201644 -139581909 + MIR SINE MIR 47 171 -91 31 26 0 0 chr11 11201701 11201739 -139581814 + AT_rich Low_complexity Low_complexity 1 38 0 428 250 116 0 chr11 11201875 11201987 -139581566 + MIR SINE MIR 116 240 -22 183 296 0 0 chr11 11202410 11202454 -139581099 + L2 LINE L2 3187 3230 -83 190 80 0 0 chr11 11202528 11202553 -139581000 - L2 LINE L2 -17 3296 3272 451 299 22 15 chr11 11202679 11202813 -139580740 + MIR SINE MIR 56 190 -72 218 289 0 0 chr11 11203009 11203061 -139580492 - MIR SINE MIR -17 245 194 773 260 54 27 chr11 11203071 11203294 -139580259 + MIR SINE MIR 34 262 0 239 325 0 26 chr11 11203295 11203372 -139580181 - MIR SINE MIR -100 162 88 200 281 0 0 chr11 11203687 11203744 -139579809 + CT-rich Low_complexity Low_complexity 3 59 0 686 287 96 9 chr11 11205868 11206098 -139577455 - MIR SINE MIR -12 250 1 564 299 111 27 chr11 11206383 11206754 -139576799 + MLT1K LTR MaLR 170 571 -17 525 287 81 6 chr11 11206899 11207073 -139576480 + MIR SINE MIR 2 188 -74 209 261 0 0 chr11 11207387 11207433 -139576120 - L2 LINE L2 -18 3254 3209 254 228 202 35 chr11 11207870 11207984 -139575569 - L2 LINE L2 0 3313 3181 593 373 159 7 chr11 11208522 11208943 -139574610 + L3 LINE CR1 986 1470 -107 230 197 115 16 chr11 11209709 11209770 -139573783 - MIR SINE MIR -118 144 78 661 296 30 15 chr11 11209950 11210174 -139573379 - MIR SINE MIR -23 239 5 459 166 80 160 chr11 11210501 11210688 -139572865 - MIR SINE MIR -56 206 35 270 281 33 52 chr11 11211151 11211304 -139572249 - MIR3 SINE MIR -30 178 29 495 225 159 0 chr11 11211648 11211786 -139571767 + MIR SINE MIR 52 211 -51 273 196 0 95 chr11 11212121 11212289 -139571264 + (CTGTG)n Simple_repeat Simple_repeat 4 155 0 1991 181 65 14 chr11 11213502 11213916 -139569637 - MER63B DNA MER1_type -1 435 1 468 307 132 60 chr11 11214012 11214734 -139568819 + L2 LINE L2 2275 3097 -175 2555 168 19 41 chr11 11214734 11215246 -139568307 - MLT1D LTR MaLR 0 505 5 468 307 132 60 chr11 11215246 11215436 -139568117 + L2 LINE L2 3097 3272 0 1065 122 0 0 chr11 11215481 11215620 -139567933 + AluSq/x SINE Alu 1 139 -174 334 254 0 0 chr11 11216819 11216886 -139566667 - L2 LINE L2 0 3313 3247 258 172 62 16 chr11 11216900 11216964 -139566589 + L2 LINE L2 3019 3085 -187 469 235 83 0 chr11 11217200 11217322 -139566231 - MIR SINE MIR -65 143 41 239 282 82 24 chr11 11217822 11217907 -139565646 + MIR3 SINE MIR 68 157 -51 690 302 108 23 chr11 11218006 11218403 -139565150 + MLT1K LTR MaLR 158 588 0 243 0 0 0 chr11 11218483 11218510 -139565043 + (CCCTAA)n Simple_repeat Simple_repeat 2 28 0 663 326 89 8 chr11 11219553 11219789 -139563764 - MIR SINE MIR -6 256 2 404 352 6 17 chr11 11221088 11221264 -139562289 + MER5B DNA MER1_type 4 177 -1 898 248 33 0 chr11 11221786 11222000 -139561553 + MER58A DNA MER1_type 1 221 -3 266 258 70 15 chr11 11222638 11222781 -139560772 + MIR SINE MIR 76 228 -34 2173 149 17 61 chr11 11223937 11224345 -139559208 + MLT1B LTR MaLR 1 390 0 4567 203 63 29 chr11 11224540 11224787 -139558766 + L1MB7 LINE L1 4186 4423 -1761 2067 133 0 0 chr11 11224787 11225072 -139558481 + AluSx SINE Alu 1 327 0 280 71 0 0 chr11 11225072 11225114 -139558439 + (CAA)n Simple_repeat Simple_repeat 2 180 0 4567 203 63 29 chr11 11225114 11226358 -139557195 + L1MB7 LINE L1 4423 5804 -380 2131 107 0 3 chr11 11226358 11226649 -139556904 + AluSx SINE Alu 1 290 -22 4567 203 63 29 chr11 11226649 11227034 -139556519 + L1MB7 LINE L1 5804 6174 -10 295 241 24 12 chr11 11227103 11227186 -139556367 + MIR3 SINE MIR 108 191 -17 316 263 143 30 chr11 11227418 11227551 -139556002 - L2 LINE L2 -1 3312 3165 711 303 155 24 chr11 11229769 11230195 -139553358 + MLT1K LTR MaLR 106 587 -1 3145 137 30 4 chr11 11231004 11231351 -139552202 - L1MB5 LINE L1 -36 6138 5771 395 68 17 0 chr11 11231351 11231410 -139552143 + (TCTA)n Simple_repeat Simple_repeat 3 62 0 3145 137 30 4 chr11 11231410 11231587 -139551966 - L1MB5 LINE L1 -403 5771 5600 385 236 130 26 chr11 11231777 11231965 -139551588 - MIR SINE MIR -47 215 9 1062 156 6 0 chr11 11232585 11232758 -139550795 - L1MB5 LINE L1 -43 6131 5958 482 271 90 30 chr11 11232758 11232953 -139550600 - MIR SINE MIR -52 210 10 564 172 35 17 chr11 11233185 11233301 -139550252 + MER103 DNA DNA 48 165 -1 1895 142 17 0 chr11 11233349 11233645 -139549908 + AluSq SINE Alu 1 301 -12 910 156 17 8 chr11 11233660 11233898 -139549655 + GA-rich Low_complexity Low_complexity 1 240 0 674 220 226 0 chr11 11233989 11234166 -139549387 + MIR SINE MIR 8 224 -38 350 307 0 10 chr11 11234964 11235065 -139548488 - MIR SINE MIR -68 140 41 681 291 58 0 chr11 11235377 11235566 -139547987 + MIR SINE MIR 60 259 -3 515 328 75 33 chr11 11236436 11236768 -139546785 + Charlie7 DNA MER1_type 108 453 -2159 381 276 162 42 chr11 11236867 11237175 -139546378 + LTR33 LTR ERVL 1 345 -176 544 180 69 65 chr11 11237211 11237456 -139546097 + Charlie7 DNA MER1_type 2366 2611 -1 4148 37 0 0 chr11 11237478 11238005 -139545548 + L1PA3 LINE L1 5657 6183 0 1611 135 113 14 chr11 11238518 11238800 -139544753 + AluSx SINE Alu 1 310 -2 1421 170 0 45 chr11 11238812 11239100 -139544453 + AluJb SINE Alu 25 299 -13 267 240 240 0 chr11 11239546 11239646 -139543907 - MIR SINE MIR -32 176 52 205 261 141 22 chr11 11240143 11240235 -139543318 + MIR SINE MIR 154 256 -6 345 300 140 33 chr11 11241250 11241277 -139542276 - MIR SINE MIR -89 173 150 1292 150 12 38 chr11 11241277 11241517 -139542036 + MER46A DNA MER2_type 1 234 -2 345 300 140 33 chr11 11241517 11241639 -139541914 - MIR SINE MIR -112 150 8 231 288 0 0 chr11 11242102 11242175 -139541378 + MER113 DNA MER1_type? 21 93 -428 1026 258 9 0 chr11 11242191 11242416 -139541137 + MIR SINE MIR 36 262 0 518 212 112 39 chr11 11242425 11242608 -139540945 + MER113 DNA MER1_type? 127 295 -226 355 236 85 19 chr11 11242608 11242714 -139540839 - MER81 DNA DNA -1 113 1 518 212 112 39 chr11 11242714 11242866 -139540687 + MER113 DNA MER1_type? 295 519 -2 332 222 111 87 chr11 11242974 11243343 -139540210 + L1ME4a LINE L1 5742 6119 -2 1844 112 65 0 chr11 11243465 11243742 -139539811 + AluSx SINE Alu 1 295 -17 209 175 0 0 chr11 11244154 11244194 -139539359 + L2 LINE L2 3256 3295 -18 270 265 60 86 chr11 11244579 11244696 -139538857 - L2 LINE L2 -1 3271 3158 329 331 63 35 chr11 11245223 11245365 -139538188 + MIR SINE MIR 92 237 -25 280 229 83 104 chr11 11245681 11245825 -139537728 + MIR SINE MIR 13 153 -55 311 270 22 0 chr11 11246340 11246429 -139537124 + (CAGAGA)n Simple_repeat Simple_repeat 3 93 0 453 286 34 20 chr11 11247516 11247663 -139535890 + MIR SINE MIR 103 251 -11 440 157 36 3 chr11 11247840 11247982 -139535571 - MER53 DNA DNA -2 187 1 421 339 83 12 chr11 11248483 11248651 -139534902 - MER5A DNA MER1_type -3 186 7 324 0 0 0 chr11 11248741 11248777 -139534776 + (TG)n Simple_repeat Simple_repeat 1 36 0 509 301 125 23 chr11 11248812 11249028 -139534525 - MIR SINE MIR -16 246 9 998 251 150 6 chr11 11249218 11249575 -139533978 + L1MC4a LINE L1 5530 5761 -403 242 281 0 0 chr11 11249575 11249660 -139533893 + (CATA)n Simple_repeat Simple_repeat 1 85 0 660 243 17 17 chr11 11249962 11250143 -139533410 - L1MD3 LINE L1 -11 7984 7804 294 320 72 16 chr11 11250181 11250306 -139533247 - L2 LINE L2 0 3272 3141 240 305 86 23 chr11 11250973 11251101 -139532452 - MIR SINE MIR -33 229 94 311 261 62 50 chr11 11251177 11251338 -139532215 + HAL1 LINE L1 26 188 -2319 1004 225 67 11 chr11 11251509 11251793 -139531760 + L1MC4a LINE L1 6272 6571 -1237 642 49 0 0 chr11 11251814 11251896 -139531657 + (TAGA)n Simple_repeat Simple_repeat 1 82 0 1232 90 0 24 chr11 11251914 11252081 -139531472 + THE1B LTR MaLR 200 362 -2 11719 86 24 5 chr11 11252083 11253634 -139529919 + THE1B-int LTR MaLR 1 1580 0 2314 121 3 62 chr11 11253634 11253801 -139529752 + THE1B LTR MaLR 1 176 -188 2678 16 0 7 chr11 11253801 11254110 -139529443 + AluYb8 SINE Alu 1 307 -11 2314 121 3 62 chr11 11254110 11254329 -139529224 + THE1B LTR MaLR 176 364 0 1069 216 127 27 chr11 11254330 11254695 -139528858 + L1MC4 LINE L1 7460 7934 -61 2075 116 3 13 chr11 11254695 11254998 -139528555 - AluSx SINE Alu -12 300 1 1069 216 127 27 chr11 11254998 11255054 -139528499 + L1MC4 LINE L1 7934 7983 -12 211 222 0 0 chr11 11255378 11255414 -139528139 + MER5B DNA MER1_type 1 36 -142 * 236 264 0 56 chr11 11255413 11255485 -139528068 - MER5B DNA MER1_type -85 93 26 248 157 17 209 chr11 11255509 11255564 -139527989 - MER5B DNA MER1_type -5 173 109 1865 107 29 0 chr11 11255564 11255836 -139527717 + AluSx SINE Alu 1 280 -32 261 0 0 0 chr11 11255836 11255865 -139527688 + (CAAT)n Simple_repeat Simple_repeat 4 32 0 248 157 17 209 chr11 11255865 11255923 -139527630 - MER5B DNA MER1_type -67 111 81 270 267 116 27 chr11 11255986 11256132 -139527421 + HAL1 LINE L1 745 903 -1604 1302 263 25 50 chr11 11256135 11256535 -139527018 + L2 LINE L2 2921 3310 -3 687 265 130 41 chr11 11256535 11257052 -139526501 + HAL1 LINE L1 896 1458 -1049 1916 154 0 0 chr11 11257311 11257617 -139525936 + AluSx SINE Alu 1 306 -6 43 0 0 0 chr11 11257729 11257772 -139525781 + AT_rich Low_complexity Low_complexity 1 43 0 317 288 54 9 chr11 11257927 11258038 -139525515 - L2 LINE L2 -3 3269 3154 250 313 22 22 chr11 11258426 11258560 -139524993 - L2 LINE L2 -495 2819 2686 212 226 19 0 chr11 11258638 11258691 -139524862 + MIR SINE MIR 88 141 -121 460 259 90 55 chr11 11259033 11259234 -139524319 - L2 LINE L2 -832 2482 2275 237 237 26 26 chr11 11259608 11259703 -139523850 + GA-rich Low_complexity Low_complexity 2 152 0 216 0 0 0 chr11 11260368 11260392 -139523161 + (TTA)n Simple_repeat Simple_repeat 2 25 0 183 326 0 0 chr11 11260431 11260474 -139523079 + L2 LINE L2 3137 3179 -93 734 284 19 45 chr11 11260511 11260779 -139522774 - MIR SINE MIR 0 262 2 296 186 0 34 chr11 11261454 11261513 -139522040 - LTR67 LTR ERVL -9 548 492 303 122 0 0 chr11 11261724 11261773 -139521780 + (TCC)n Simple_repeat Simple_repeat 1 49 0 647 285 105 6 chr11 11262050 11262280 -139521273 - MIR SINE MIR -12 250 1 516 309 157 47 chr11 11262597 11263043 -139520510 - L3 LINE CR1 -193 1384 890 1620 257 90 23 chr11 11263576 11264098 -139519455 + L2 LINE L2 2094 2650 -664 1162 137 26 6 chr11 11264114 11264346 -139519207 - AluJb SINE Alu -6 306 26 1186 223 156 35 chr11 11264357 11264406 -139519147 + L2 LINE L2 2692 2734 -579 2031 126 7 3 chr11 11264406 11264708 -139518845 - AluSx SINE Alu -9 303 1 1186 223 156 35 chr11 11264708 11265214 -139518339 + L2 LINE L2 2734 3311 -2 182 308 0 0 chr11 11265247 11265299 -139518254 - MIR SINE MIR -101 161 110 443 252 71 24 chr11 11266002 11266129 -139517424 - L2 LINE L2 0 3272 3140 206 62 31 0 chr11 11266129 11266161 -139517392 + (CACCAT)n Simple_repeat Simple_repeat 1 33 0 883 268 68 8 chr11 11266163 11266398 -139517155 - MIR SINE MIR -5 257 9 273 306 97 73 chr11 11266644 11266850 -139516703 - MIR SINE MIR -6 256 46 581 136 64 129 chr11 11267552 11267605 -139515948 - AluJ SINE Alu -171 131 76 2247 64 40 0 chr11 11267605 11267901 -139515652 - AluY SINE Alu -3 308 1 581 136 64 129 chr11 11267901 11267987 -139515566 - AluJ SINE Alu -226 76 1 252 299 65 0 chr11 11268714 11268791 -139514762 + L2 LINE L2 2624 2705 -609 187 275 208 20 chr11 11269640 11269789 -139513764 - MER5B DNA MER1_type -1 177 1 465 310 75 16 chr11 11270252 11270636 -139512917 + MLT1L LTR MaLR 121 584 -31 378 331 93 65 chr11 11272355 11273012 -139510541 + L2 LINE L2 2596 3264 -8 2013 151 0 0 chr11 11273334 11273638 -139509915 + AluSx SINE Alu 1 304 -8 1724 144 56 105 chr11 11274402 11274812 -139508741 + MLT1B LTR MaLR 1 390 0 382 253 69 120 chr11 11274825 11275052 -139508501 - MIR SINE MIR -53 209 3 2001 167 0 0 chr11 11276147 11276459 -139507094 + AluSx SINE Alu 1 312 0 540 248 35 14 chr11 11276520 11276661 -139506892 + MER117 DNA MER1_type 1 144 -53 2337 92 3 3 chr11 11276761 11277067 -139506486 - AluSp SINE Alu -5 308 3 444 154 0 0 chr11 11278324 11278416 -139505137 - AluJo SINE Alu 0 311 220 1197 164 0 0 chr11 11278416 11278593 -139504960 - AluJo SINE Alu -135 177 1 1567 144 55 74 chr11 11279005 11279258 -139504295 - MLT1F1 LTR MaLR -261 306 59 752 110 0 0 chr11 11279258 11279358 -139504195 + HY3 scRNA scRNA 1 100 -1 1567 144 55 74 chr11 11279358 11279416 -139504137 - MLT1F1 LTR MaLR -508 59 1 298 314 148 65 chr11 11279430 11279659 -139503894 - L2 LINE L2 -45 3227 2980 1983 125 14 0 chr11 11280074 11280354 -139503199 + AluSx SINE Alu 24 307 -5 180 305 17 0 chr11 11281549 11281608 -139501945 - L2 LINE L2 -91 3222 3163 247 313 30 0 chr11 11282354 11282453 -139501100 - LTR67 LTR ERVL -17 540 439 187 310 124 9 chr11 11282919 11283032 -139500521 - MIR SINE MIR -34 228 103 2019 169 0 3 chr11 11283045 11283358 -139500195 - AluJb SINE Alu 0 312 1 2124 101 10 42 chr11 11284106 11284414 -139499139 + AluSq SINE Alu 1 298 -15 4486 125 5 65 chr11 11284538 11285273 -139498280 + LTR8 LTR ERV1 1 691 0 333 0 0 0 chr11 11285297 11285334 -139498219 + (TG)n Simple_repeat Simple_repeat 2 38 0 392 196 54 71 chr11 11285335 11285447 -139498106 + MLT1F1 LTR MaLR 88 197 -370 210 71 0 0 chr11 11285447 11285475 -139498078 + (TC)n Simple_repeat Simple_repeat 2 29 0 589 247 80 7 chr11 11285480 11285630 -139497923 + MER96 DNA MER1_type? 12 172 -3 391 297 16 104 chr11 11286141 11286390 -139497163 - MIR SINE MIR -34 228 2 1967 122 18 0 chr11 11286474 11286760 -139496793 + AluSx SINE Alu 2 292 -20 366 249 127 24 chr11 11286959 11287124 -139496429 + MIR SINE MIR 25 206 -56 32 57 0 0 chr11 11287124 11287177 -139496376 + AT_rich Low_complexity Low_complexity 1 53 0 938 161 0 0 chr11 11287570 11287707 -139495846 + FRAM SINE Alu 1 137 -39 210 71 0 0 chr11 11287710 11287738 -139495815 + (GGAA)n Simple_repeat Simple_repeat 3 30 0 287 254 40 111 chr11 11287966 11288153 -139495400 - MLT1L LTR MaLR -360 228 87 203 139 38 13 chr11 11288198 11288277 -139495276 + (TG)n Simple_repeat Simple_repeat 1 81 0 207 250 26 13 chr11 11288287 11288363 -139495190 + (TATG)n Simple_repeat Simple_repeat 2 78 0 216 0 0 0 chr11 11288415 11288439 -139495114 + (TTTTA)n Simple_repeat Simple_repeat 3 26 0 1183 106 10 60 chr11 11288439 11288638 -139494915 - L1PB2 LINE L1 -11 6140 5952 197 278 67 44 chr11 11289514 11289604 -139493949 + MIR SINE MIR 110 201 -61 * 336 219 105 44 chr11 11289598 11289712 -139493841 - L2 LINE L2 0 3313 3193 1986 109 24 10 chr11 11290044 11290337 -139493216 + AluSx SINE Alu 9 305 -7 2102 131 0 13 chr11 11290337 11290650 -139492903 + AluSg SINE Alu 1 309 -1 451 257 128 57 chr11 11290662 11291028 -139492525 + L2 LINE L2 2024 2415 -899 723 218 0 0 chr11 11291104 11291228 -139492325 - FLAM_C SINE Alu -18 125 2 633 317 71 44 chr11 11291246 11291679 -139491874 + L2 LINE L2 2645 3088 -184 240 280 106 26 chr11 11291682 11291871 -139491682 + L1MC4a LINE L1 4726 4929 -1217 628 126 39 19 chr11 11292157 11292260 -139491293 + FLAM_C SINE Alu 29 133 -10 686 289 117 57 chr11 11292344 11292837 -139490716 + L1MC4a LINE L1 5297 5830 -1978 1299 189 12 114 chr11 11292837 11292983 -139490570 + AluSp SINE Alu 1 96 -217 1937 130 7 4 chr11 11292983 11293260 -139490293 + AluSx SINE Alu 1 278 -34 1299 189 12 114 chr11 11293260 11293447 -139490106 + AluSp SINE Alu 96 300 -13 686 289 117 57 chr11 11293447 11293517 -139490036 + L1MC4a LINE L1 5830 5894 -1914 496 239 43 43 chr11 11293770 11293933 -139489620 + LTR41 LTR ERVL 10 172 -601 1894 126 20 7 chr11 11294405 11294699 -139488854 + L1PA13 LINE L1 5866 6163 0 710 209 0 20 chr11 11294722 11294875 -139488678 + MIR SINE MIR 104 253 -9 222 327 62 18 chr11 11294867 11294915 -139488638 + L3 LINE CR1 1165 1209 -368 * 2205 134 0 0 chr11 11294915 11295214 -139488339 + AluSx SINE Alu 1 299 -13 222 327 62 18 chr11 11295214 11295278 -139488275 + L3 LINE CR1 1209 1282 -295 438 235 17 59 chr11 11295350 11295469 -139488084 - MER81 DNA DNA 0 114 1 190 345 35 17 chr11 11295496 11295612 -139487941 + L3 LINE CR1 1425 1542 -35 676 287 56 3 chr11 11295635 11295857 -139487696 + MIR SINE MIR 20 249 -13 819 225 22 6 chr11 11295902 11296084 -139487469 + MER5A DNA MER1_type 5 189 0 1971 158 19 3 chr11 11296901 11297224 -139486329 + LTR32 LTR ERVL 15 342 -129 1007 128 0 6 chr11 11297283 11297439 -139486114 + LTR32 LTR ERVL 317 471 0 817 180 0 0 chr11 11298010 11298132 -139485421 + FLAM_C SINE Alu 2 123 -20 278 188 165 24 chr11 11298441 11298526 -139485027 + MIR SINE MIR 164 260 -2 639 261 117 51 chr11 11298589 11298846 -139484707 - L1MEd LINE L1 -5509 610 337 334 191 43 21 chr11 11298976 11299007 -139484546 - L1MEd LINE L1 -6001 118 89 333 0 0 0 chr11 11299007 11299044 -139484509 + (TG)n Simple_repeat Simple_repeat 2 38 0 334 191 43 21 chr11 11299044 11299106 -139484447 - L1MEd LINE L1 -6030 89 23 2464 112 6 6 chr11 11299433 11299773 -139483780 + L1PB1 LINE L1 5803 6142 -9 2420 157 8 18 chr11 11299839 11300233 -139483320 + MLT1B LTR MaLR 1 390 0 865 180 0 7 chr11 11300349 11300499 -139483054 + AluJb SINE Alu 140 288 -24 563 77 70 4 chr11 11300499 11300792 -139482761 + (TA)n Simple_repeat Simple_repeat 1 312 0 914 198 6 0 chr11 11300862 11301019 -139482534 + FRAM SINE Alu 1 158 -18 1214 300 31 80 chr11 11301427 11302114 -139481439 + L2 LINE L2 2054 2706 -608 1975 132 7 20 chr11 11302117 11302420 -139481133 - AluSx SINE Alu -13 299 1 403 292 146 10 chr11 11302994 11303186 -139480367 + L2 LINE L2 2836 3053 -219 1095 167 82 26 chr11 11303407 11303752 -139479801 + Charlie5 DNA MER1_type 5 2530 -82 2164 100 7 0 chr11 11303752 11304053 -139479500 - AluSx SINE Alu -9 303 1 426 182 52 0 chr11 11305474 11305551 -139478002 - L1MB7 LINE L1 -56 6128 6048 205 29 59 0 chr11 11307028 11307062 -139476491 + (TA)n Simple_repeat Simple_repeat 2 37 0 561 309 100 9 chr11 11307185 11307405 -139476148 + MIR SINE MIR 20 259 -3 622 228 18 0 chr11 11307410 11307524 -139476029 - FLAM_A SINE Alu -16 117 2 245 277 60 24 chr11 11307552 11307635 -139475918 - MIR SINE MIR -81 127 42 2259 209 8 31 chr11 11307766 11308282 -139475271 - L1ME1 LINE L1 -4 6162 5659 812 144 0 0 chr11 11309397 11309508 -139474045 + AluJ SINE Alu 17 127 -185 2248 67 14 0 chr11 11309608 11309891 -139473662 - L1PA13 LINE L1 -4 6159 5873 1855 170 10 0 chr11 11310361 11310655 -139472898 + AluJb SINE Alu 1 297 -15 1502 173 46 11 chr11 11310662 11310946 -139472607 + AluJo SINE Alu 1 294 -18 4254 260 103 22 chr11 11311006 11311959 -139471594 - L2 LINE L2 -2 3311 2436 2349 184 70 11 chr11 11311959 11312400 -139471153 + LTR24 LTR ERV1 1 467 0 4254 260 103 22 chr11 11312400 11313085 -139470468 - L2 LINE L2 -877 2436 1526 752 218 151 67 chr11 11313718 11314030 -139469523 - MER46C DNA MER2_type 0 338 1 422 252 96 69 chr11 11314176 11314394 -139469159 - MLT1L LTR MaLR -175 440 217 976 164 31 6 chr11 11314405 11314564 -139468989 - MER20 DNA MER1_type -2 217 55 345 255 48 75 chr11 11314589 11314777 -139468776 - MLT1L LTR MaLR -432 183 1 851 226 0 0 chr11 11314819 11314978 -139468575 + AluJ SINE Alu 137 295 -17 240 338 103 15 chr11 11315576 11315712 -139467841 - L2 LINE L2 0 3272 3125 1887 161 0 13 chr11 11316079 11316377 -139467176 + AluJb SINE Alu 3 296 -16 379 209 136 0 chr11 11316379 11316489 -139467064 - MIR SINE MIR -52 210 86 540 265 141 103 chr11 11316675 11317073 -139466480 + L2 LINE L2 2590 3029 -284 2615 55 0 0 chr11 11317073 11317382 -139466171 - AluY SINE Alu -2 309 1 540 265 141 103 chr11 11317382 11317669 -139465884 + L2 LINE L2 3029 3304 -9 268 167 0 0 chr11 11317857 11317905 -139465648 + FLAM_A SINE Alu 86 133 0 1425 142 36 113 chr11 11317920 11318257 -139465296 + AluJo SINE Alu 2 312 0 193 284 148 23 chr11 11318268 11318356 -139465197 + MIR SINE MIR 153 251 -11 34 0 0 22 chr11 11320310 11320332 -139463221 + AT_rich Low_complexity Low_complexity 1 22 -22 725 180 0 33 chr11 11320332 11320454 -139463099 + FLAM_C SINE Alu 1 118 -15 34 0 0 22 chr11 11320454 11320476 -139463077 + AT_rich Low_complexity Low_complexity 22 44 0 2048 131 0 0 chr11 11320587 11320896 -139462657 - AluSx SINE Alu 0 310 2 736 219 65 69 chr11 11322024 11322270 -139461283 + MER112 DNA MER1_type 12 256 -4 197 62 0 31 chr11 11322794 11322826 -139460727 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 493 253 136 32 chr11 11323762 11323983 -139459570 + MIR SINE MIR 11 254 -8 2236 104 0 31 chr11 11324067 11324385 -139459168 + AluSg SINE Alu 1 308 -2 21 0 0 56 chr11 11327190 11327209 -139456344 + AT_rich Low_complexity Low_complexity 1 19 -15 2205 111 7 7 chr11 11327209 11327515 -139456038 + AluSp SINE Alu 1 306 -7 21 0 0 56 chr11 11327515 11327531 -139456022 + AT_rich Low_complexity Low_complexity 19 34 0 2232 109 0 23 chr11 11327874 11328178 -139455375 + AluSx SINE Alu 2 298 -14 2132 131 13 3 chr11 11328741 11329039 -139454514 + AluSx SINE Alu 1 301 -11 220 258 45 0 chr11 11329216 11329305 -139454248 + GA-rich Low_complexity Low_complexity 2 94 0 219 211 195 44 chr11 11329571 11329746 -139453807 + MIR SINE MIR 22 217 -45 1567 70 15 10 chr11 11331194 11331426 -139452127 - AluSp SINE Alu 0 313 95 253 217 121 0 chr11 11331675 11331758 -139451795 - L2 LINE L2 0 3272 3180 2133 134 3 0 chr11 11331826 11332132 -139451421 + AluSx SINE Alu 1 307 -5 746 131 0 0 chr11 11332386 11332493 -139451060 + FLAM_C SINE Alu 2 108 -35 244 231 58 0 chr11 11333670 11333722 -139449831 - L1ME3A LINE L1 -75 6095 6041 1710 163 0 11 chr11 11335439 11335715 -139447838 + AluJo SINE Alu 1 273 -39 318 282 19 10 chr11 11335723 11335826 -139447727 + MIR SINE MIR 32 135 -73 23 0 0 0 chr11 11335956 11335979 -139447574 + AT_rich Low_complexity Low_complexity 1 23 0 233 241 193 0 chr11 11336723 11336806 -139446747 + MIR SINE MIR 48 146 -62 1968 130 0 3 chr11 11336849 11337165 -139446388 - AluSx SINE Alu 0 315 1 828 147 0 22 chr11 11337306 11337437 -139446116 + AluJo/FLAM SINE Alu 1 129 -169 2419 72 3 0 chr11 11337437 11337729 -139445824 - AluSp SINE Alu -19 294 2 2287 111 7 0 chr11 11337792 11338118 -139445435 - AluSx SINE Alu 0 332 5 2273 113 7 0 chr11 11338598 11338900 -139444653 + AluSx SINE Alu 1 304 -8 195 303 131 16 chr11 11339297 11339419 -139444134 + L2 LINE L2 3137 3272 0 382 229 93 34 chr11 11340767 11340885 -139442668 - MER5A DNA MER1_type -56 133 9 594 287 19 19 chr11 11341221 11341482 -139442071 - L2 LINE L2 -2914 400 140 2343 99 3 3 chr11 11341850 11342154 -139441399 - AluSx SINE Alu -8 304 1 1594 195 7 0 chr11 11342668 11342960 -139440593 - AluJb SINE Alu -16 296 3 441 193 30 66 chr11 11343241 11343347 -139440206 + L1M4 LINE L1 4395 4494 -1652 2212 122 3 3 chr11 11343347 11343651 -139439902 + AluJb SINE Alu 1 304 -8 441 193 30 66 chr11 11343651 11343710 -139439843 + L1M4 LINE L1 4494 4554 -1592 1711 155 37 0 chr11 11343799 11344102 -139439451 + AluJb SINE Alu 1 313 0 312 349 67 7 chr11 11344194 11344343 -139439210 + MIR SINE MIR 27 184 -78 837 173 28 56 chr11 11344534 11344713 -139438840 + MER69A DNA AcHobo 2 175 -2 2387 77 13 7 chr11 11344746 11345056 -139438497 + AluSx SINE Alu 1 312 0 1960 167 92 23 chr11 11345395 11345832 -139437721 - MLT1C LTR MaLR 0 467 1 1900 151 20 59 chr11 11346119 11346509 -139437044 + THE1C LTR MaLR 1 375 0 292 268 35 81 chr11 11346529 11346727 -139436826 + MIR SINE MIR 69 257 -5 586 282 132 19 chr11 11346821 11347320 -139436233 + L2 LINE L2 2738 3299 -14 292 312 215 8 chr11 11348076 11348323 -139435230 - L2 LINE L2 -952 2362 2065 264 235 292 25 chr11 11348521 11348764 -139434789 - L2 LINE L2 -1267 2047 1740 1985 107 21 17 chr11 11349063 11349354 -139434199 - AluSp SINE Alu -21 292 1 297 243 27 0 chr11 11351566 11351640 -139431913 + MER5A DNA MER1_type 84 159 -30 1751 132 59 24 chr11 11351757 11352044 -139431509 - AluJb SINE Alu -15 297 1 195 42 0 0 chr11 11352478 11352502 -139431051 + (A)n Simple_repeat Simple_repeat 1 24 0 1984 130 10 10 chr11 11355946 11356247 -139427306 + AluSx SINE Alu 1 301 -11 24 32 0 0 chr11 11356491 11356522 -139427031 + AT_rich Low_complexity Low_complexity 1 31 0 2284 88 3 7 chr11 11358819 11359114 -139424439 - AluSx SINE Alu -18 294 1 710 201 107 12 chr11 11359540 11359709 -139423844 - MER5A DNA MER1_type -1 188 4 774 141 8 31 chr11 11359712 11359840 -139423713 - FLAM_C SINE Alu -7 126 2 244 71 0 143 chr11 11360314 11360370 -139423183 - Alu SINE Alu -170 132 85 235 179 0 75 chr11 11362123 11362190 -139421363 + GA-rich Low_complexity Low_complexity 1 62 0 23 68 0 0 chr11 11364098 11364142 -139419411 + AT_rich Low_complexity Low_complexity 1 44 0 2111 135 0 0 chr11 11364390 11364679 -139418874 - AluSx SINE Alu -21 291 3 21 36 0 0 chr11 11364681 11364709 -139418844 + AT_rich Low_complexity Low_complexity 1 28 0 1488 171 19 15 chr11 11364871 11365134 -139418419 + AluJo SINE Alu 32 295 -17 1786 161 14 0 chr11 11365135 11365415 -139418138 + AluJb SINE Alu 2 285 -27 189 242 0 55 chr11 11365635 11365726 -139417827 + L2 LINE L2 2211 2296 -1018 617 283 115 4 chr11 11365756 11366000 -139417553 + MER102b DNA MER1_type 55 325 -16 554 264 66 0 chr11 11366073 11366240 -139417313 + MIR SINE MIR 37 214 -48 2329 108 0 3 chr11 11366602 11366908 -139416645 + AluSg SINE Alu 1 305 -5 1069 174 0 6 chr11 11366974 11367152 -139416401 + MER5B DNA MER1_type 2 178 0 444 239 220 62 chr11 11367707 11367966 -139415587 - L2 LINE L2 -775 2539 2240 230 247 21 86 chr11 11368325 11368373 -139415180 - L2 LINE L2 -607 2707 2666 1978 154 7 3 chr11 11368373 11368678 -139414875 + AluJb SINE Alu 5 310 -2 230 247 21 86 chr11 11368678 11368722 -139414831 - L2 LINE L2 -648 2666 2621 1888 280 85 50 chr11 11368883 11370061 -139413492 + L2 LINE L2 2035 3235 -78 1924 168 0 3 chr11 11370098 11370402 -139413151 + AluSx SINE Alu 1 303 -9 255 226 16 0 chr11 11370475 11370537 -139413016 + L2 LINE L2 3251 3313 0 1218 173 108 138 chr11 11370773 11371294 -139412259 - MLT1D LTR MaLR 0 505 1 315 259 25 0 chr11 11371430 11371511 -139412042 - L2 LINE L2 0 3272 3190 466 244 0 0 chr11 11371531 11371621 -139411932 + MER94 DNA DNA 45 134 0 2125 117 35 132 chr11 11371945 11372206 -139411347 + Tigger2a DNA MER2_type 1 285 -2423 1976 141 0 54 chr11 11372206 11372519 -139411034 + AluJb SINE Alu 1 296 -16 824 147 0 22 chr11 11372522 11372658 -139410895 - AluJo/FLAM SINE Alu -169 133 1 2125 117 35 132 chr11 11372658 11372871 -139410682 + Tigger2a DNA MER2_type 287 433 -1 189 0 0 0 chr11 11373100 11373121 -139410432 + (ATTG)n Simple_repeat Simple_repeat 4 24 0 1939 138 0 7 chr11 11373121 11373403 -139410150 - AluSx SINE Alu -32 280 1 23 101 0 0 chr11 11373405 11373484 -139410069 + AT_rich Low_complexity Low_complexity 1 79 0 1695 107 99 12 chr11 11373490 11373772 -139409781 + AluSx SINE Alu 11 314 0 1699 158 59 33 chr11 11374058 11374362 -139409191 - AluJo SINE Alu 0 312 1 1904 169 36 2 chr11 11374439 11374853 -139408700 + L1 LINE L1 3140 3567 -2579 2409 166 98 35 chr11 11374871 11375361 -139408192 - L1 LINE L1 -2647 3499 3042 432 0 0 0 chr11 11375361 11375409 -139408144 + (TG)n Simple_repeat Simple_repeat 1 48 0 2025 114 4 4 chr11 11375416 11375688 -139407865 - AluSq SINE Alu -41 272 1 2409 166 98 35 chr11 11375688 11375850 -139407703 - L1 LINE L1 -3109 3037 2797 1241 128 190 0 chr11 11375889 11376100 -139407453 + MER21A LTR ERV1 13 263 -668 2717 146 56 79 chr11 11376106 11376675 -139406878 + MER21A LTR ERV1 376 931 0 581 198 63 0 chr11 11377356 11377467 -139406086 + FLAM_C SINE Alu 2 119 -24 842 168 0 0 chr11 11377779 11377904 -139405649 - FLAM_C SINE Alu -8 125 1 221 311 54 14 chr11 11377991 11378065 -139405488 + L2 LINE L2 3229 3305 -8 454 249 305 5 chr11 11378121 11378318 -139405235 - MIR SINE MIR -4 258 3 207 345 64 36 chr11 11378523 11378633 -139404920 - MER91A DNA MER1_type -62 134 22 863 227 0 0 chr11 11378918 11379090 -139404463 - FRAM SINE Alu -1 175 4 198 128 0 0 chr11 11379108 11379147 -139404406 + (A)n Simple_repeat Simple_repeat 1 39 0 1843 211 3 37 chr11 11379155 11379414 -139404139 + MLT1A1 LTR MaLR 1 245 -120 2189 103 10 10 chr11 11379414 11379715 -139403838 - AluSx SINE Alu -11 301 1 1843 211 3 37 chr11 11379715 11379829 -139403724 + MLT1A1 LTR MaLR 245 361 -4 22 0 0 0 chr11 11379910 11379932 -139403621 + AT_rich Low_complexity Low_complexity 1 22 0 243 0 0 0 chr11 11380121 11380148 -139403405 + (A)n Simple_repeat Simple_repeat 1 27 0 26 0 0 0 chr11 11380324 11380350 -139403203 + AT_rich Low_complexity Low_complexity 1 26 0 605 241 0 35 chr11 11380540 11380681 -139402872 - L2 LINE L2 0 3272 3137 2312 135 21 26 chr11 11381470 11381847 -139401706 - THE1C LTR MaLR 0 375 1 10449 119 26 38 chr11 11381847 11382966 -139400587 - THE1C-int LTR MaLR 0 1580 484 2043 131 0 13 chr11 11382966 11383264 -139400289 - AluSx SINE Alu -18 294 1 10449 119 26 38 chr11 11383264 11383743 -139399810 - THE1C-int LTR MaLR -1096 484 1 2236 135 18 61 chr11 11383743 11383786 -139399767 - THE1C LTR MaLR 0 375 332 2373 82 3 0 chr11 11383786 11384091 -139399462 + AluY SINE Alu 1 306 -5 2236 135 18 61 chr11 11384091 11384439 -139399114 - THE1C LTR MaLR -43 332 1 205 291 81 12 chr11 11384719 11384805 -139398748 + MIR3 SINE MIR 104 195 -13 506 302 132 19 chr11 11384842 11385054 -139398499 - MIR SINE MIR -21 241 6 2583 54 0 0 chr11 11385230 11385528 -139398025 + AluY SINE Alu 1 298 -13 1648 194 14 0 chr11 11386014 11386308 -139397245 - AluJb SINE Alu -8 304 7 1938 125 44 0 chr11 11386610 11386907 -139396646 + AluSq SINE Alu 1 309 0 1606 193 3 10 chr11 11386972 11387106 -139396447 + AluJo SINE Alu 1 134 -178 2186 137 0 0 chr11 11387106 11387406 -139396147 + AluSx SINE Alu 1 300 -12 1606 193 3 10 chr11 11387406 11387576 -139395977 + AluJo SINE Alu 134 303 -9 345 345 79 23 chr11 11387655 11387959 -139395594 + ERVL LTR ERVL 299 619 -5145 2252 96 93 31 chr11 11388044 11388397 -139395156 - THE1C LTR MaLR 0 375 1 2174 200 107 14 chr11 11388419 11388904 -139394649 + MLT1F LTR MaLR 5 534 -8 3395 106 22 22 chr11 11389015 11389508 -139394045 + MER1A DNA MER1_type 37 529 0 343 358 0 6 chr11 11389539 11389712 -139393841 + ERVL LTR ERVL 960 1131 -4633 2024 138 14 0 chr11 11389816 11390112 -139393441 - AluSx SINE Alu -11 301 2 3863 107 24 0 chr11 11390123 11390655 -139392898 - L1PA14 LINE L1 -1 6160 5616 892 188 6 12 chr11 11390728 11390888 -139392665 - FRAM SINE Alu -17 159 1 260 268 134 31 chr11 11391482 11391609 -139391944 + ERVL LTR ERVL 1852 1991 -3663 422 224 31 10 chr11 11391611 11391709 -139391844 + ERVL LTR ERVL 4565 4664 -1100 2625 120 26 0 chr11 11391716 11392100 -139391453 - L1PA14 LINE L1 -91 6070 5677 619 243 78 34 chr11 11392152 11392358 -139391195 + MER58C DNA MER1_type 1 215 0 467 317 65 9 chr11 11392368 11392598 -139390955 + ERVL LTR ERVL 4721 4963 -801 629 154 95 53 chr11 11392790 11392927 -139390626 + L1MD3 LINE L1 7812 7959 -36 2096 109 53 0 chr11 11392927 11393211 -139390342 - AluSx SINE Alu -13 299 1 629 154 95 53 chr11 11393211 11393242 -139390311 + L1MD3 LINE L1 7959 7987 -8 654 183 17 35 chr11 11393243 11393358 -139390195 + FLAM_C SINE Alu 2 114 -29 22 35 0 0 chr11 11393376 11393405 -139390148 + AT_rich Low_complexity Low_complexity 1 29 0 23 68 0 0 chr11 11393573 11393617 -139389936 + AT_rich Low_complexity Low_complexity 1 44 0 869 147 0 0 chr11 11393617 11393733 -139389820 - FLAM_C SINE Alu -15 118 3 23 0 0 0 chr11 11393958 11393981 -139389572 + AT_rich Low_complexity Low_complexity 1 23 0 1906 152 3 0 chr11 11393984 11394280 -139389273 - AluJb SINE Alu -10 302 6 192 200 0 0 chr11 11394390 11394425 -139389128 + MIR SINE MIR 195 229 -33 1586 171 36 43 chr11 11395097 11395402 -139388151 + AluJo SINE Alu 1 303 -9 2170 108 7 0 chr11 11395852 11396138 -139387415 - AluSg SINE Alu -22 288 1 1801 195 142 33 chr11 11396356 11396699 -139386854 + MLT1F1 LTR MaLR 1 411 -156 2519 61 0 0 chr11 11396699 11396996 -139386557 - AluY SINE Alu -14 297 1 1801 195 142 33 chr11 11396996 11397173 -139386380 + MLT1F1 LTR MaLR 411 567 0 384 204 159 0 chr11 11397175 11397288 -139386265 + MIR SINE MIR 117 247 -15 373 250 52 46 chr11 11397412 11397593 -139385960 - MIR SINE MIR -49 213 34 445 276 29 0 chr11 11397613 11397718 -139385835 - L2 LINE L2 -12 3301 3194 24 0 0 0 chr11 11399011 11399035 -139384518 + AT_rich Low_complexity Low_complexity 1 24 0 555 282 219 15 chr11 11399667 11400081 -139383472 + L2 LINE L2 2726 3244 -69 318 341 133 9 chr11 11400455 11400681 -139382872 - MER112 DNA MER1_type -4 256 3 1762 181 7 0 chr11 11401089 11401388 -139382165 - AluJo SINE Alu -11 301 1 1409 192 130 11 chr11 11401397 11401658 -139381895 - AluJo SINE Alu -10 292 1 376 174 257 28 chr11 11401659 11401768 -139381785 - MIR3 SINE MIR -41 167 34 1466 173 36 11 chr11 11401973 11402250 -139381303 + AluJo SINE Alu 11 294 -18 929 190 0 6 chr11 11402323 11402481 -139381072 - AluJb SINE Alu -155 157 1 195 215 65 129 chr11 11403949 11404011 -139379542 + MIR SINE MIR 161 217 -45 2140 113 0 44 chr11 11404011 11404147 -139379406 + AluSx SINE Alu 1 141 -171 1654 125 0 62 chr11 11404147 11404419 -139379134 + AluSx SINE Alu 1 255 -57 2140 113 0 44 chr11 11404419 11404601 -139378952 + AluSx SINE Alu 141 305 -7 195 215 65 129 chr11 11404601 11404631 -139378922 + MIR SINE MIR 217 247 -15 289 329 58 15 chr11 11404799 11404936 -139378617 - MIR SINE MIR -6 256 114 231 328 15 76 chr11 11405832 11405963 -139377590 - L2 LINE L2 -337 2935 2813 1869 310 52 47 chr11 11406206 11407977 -139375576 - Charlie1 DNA MER1_type -236 2525 746 814 165 0 15 chr11 11408719 11408852 -139374701 - MER58A DNA MER1_type 0 167 37 371 296 186 20 chr11 11410053 11410252 -139373301 - MIR SINE MIR -19 243 12 289 259 76 61 chr11 11411636 11411767 -139371786 - MER5A DNA MER1_type 0 189 57 23 33 0 0 chr11 11412770 11412800 -139370753 + AT_rich Low_complexity Low_complexity 1 30 0 2063 61 34 4 chr11 11413000 11413264 -139370289 - L1PA5 LINE L1 -2 6152 5881 1601 162 80 52 chr11 11413386 11413751 -139369802 + THE1C LTR MaLR 1 375 0 777 107 214 0 chr11 11413871 11414002 -139369551 + AluSp SINE Alu 153 311 -2 829 301 44 72 chr11 11414002 11414682 -139368871 + ERVL LTR ERVL 785 1445 -4319 2025 142 7 20 chr11 11415715 11416017 -139367536 - AluJb SINE Alu -14 298 1 796 176 0 0 chr11 11416101 11416232 -139367321 - FLAM_C SINE Alu 0 143 13 226 246 0 0 chr11 11416438 11416503 -139367050 - HAL1 LINE L1 0 2507 2443 341 152 3 5 chr11 11416562 11416636 -139366917 + FLAM SINE Alu 72 131 -2 2732 124 13 52 chr11 11416654 11417115 -139366438 + MER65A LTR ERV1 1 443 -2 1177 132 11 11 chr11 11417339 11417513 -139366040 + AluSg/x SINE Alu 125 298 -14 2338 101 0 0 chr11 11417513 11417809 -139365744 + AluSx SINE Alu 1 296 -16 26 0 0 0 chr11 11418142 11418168 -139365385 + AT_rich Low_complexity Low_complexity 1 26 0 1862 152 0 3 chr11 11418168 11418458 -139365095 - AluSx SINE Alu -23 289 1 203 183 67 50 chr11 11418544 11418604 -139364949 - MIR SINE MIR -98 164 104 181 248 191 57 chr11 11419069 11419210 -139364343 + MIR SINE MIR 56 215 -47 28 61 0 0 chr11 11419561 11419610 -139363943 + AT_rich Low_complexity Low_complexity 1 49 0 671 168 55 45 chr11 11419720 11419752 -139363801 + L1 LINE L1 4614 4644 -1502 2378 100 0 0 chr11 11419752 11420052 -139363501 + AluSc SINE Alu 1 300 -9 671 168 55 45 chr11 11420052 11420351 -139363202 + L1 LINE L1 4644 5202 -944 1404 173 79 11 chr11 11420354 11420620 -139362933 + AluJo SINE Alu 16 299 -13 5231 155 19 28 chr11 11420620 11421279 -139362274 + L1MD1 LINE L1 5279 5928 -314 1650 121 55 8 chr11 11421279 11421535 -139362018 - AluSx SINE Alu -44 268 1 5231 155 19 28 chr11 11421535 11421832 -139361721 + L1MD1 LINE L1 5928 6226 -16 409 201 87 27 chr11 11421891 11422040 -139361513 + L1MC5 LINE L1 7783 7940 -21 22 0 0 0 chr11 11422054 11422076 -139361477 + AT_rich Low_complexity Low_complexity 1 22 0 355 308 100 51 chr11 11422253 11422744 -139360809 + L1M4 LINE L1 4492 5006 -1140 1923 177 99 48 chr11 11422915 11423412 -139360141 + LTR64 LTR ERVK 20 541 -17 1045 171 0 0 chr11 11423457 11423621 -139359932 - AluJb SINE Alu -13 299 136 1035 121 54 0 chr11 11423731 11423880 -139359673 - LTR47A LTR ERVL -295 157 1 495 234 39 19 chr11 11423880 11424034 -139359519 + L1 LINE L1 2771 2927 -3219 539 283 67 87 chr11 11424132 11424521 -139359032 - MLT1I LTR MaLR -13 396 16 510 176 0 0 chr11 11426134 11426219 -139357334 + Charlie1a DNA MER1_type 57 141 -1314 4941 169 60 57 chr11 11426219 11427283 -139356270 + MER11C LTR ERVK 1 1067 -4 2625 113 84 9 chr11 11426843 11427284 -139356269 + MER11A LTR ERVK 789 1262 -4 593 241 147 75 chr11 11427336 11427656 -139355897 - MLT1A1 LTR MaLR -22 343 1 * 6204 164 52 15 chr11 11427656 11428873 -139354680 + Charlie1a DNA MER1_type 193 1455 0 924 229 233 7 chr11 11429483 11429784 -139353769 + MLT1K LTR MaLR 218 586 -2 2378 89 0 16 chr11 11430055 11430368 -139353185 - AluSc SINE Alu -1 308 1 237 146 0 0 chr11 11430688 11430736 -139352817 + (TG)n Simple_repeat Simple_repeat 2 49 0 503 253 129 0 chr11 11430959 11431129 -139352424 + MIR SINE MIR 1 192 -70 523 239 100 32 chr11 11431421 11431672 -139351881 + L1ME4a LINE L1 5617 5884 -237 1674 169 14 27 chr11 11431677 11431972 -139351581 + AluJo SINE Alu 1 291 -21 25 51 0 0 chr11 11432304 11432343 -139351210 + AT_rich Low_complexity Low_complexity 1 39 0 187 339 0 0 chr11 11432377 11432442 -139351111 + MIR SINE MIR 186 250 -12 467 321 75 0 chr11 11432459 11432671 -139350882 - MIR SINE MIR -22 240 13 333 47 0 0 chr11 11434738 11434781 -139348772 + (TG)n Simple_repeat Simple_repeat 2 44 0 306 301 0 12 chr11 11435612 11435695 -139347858 - MLT1K LTR MaLR -437 151 70 36 23 0 0 chr11 11436983 11437026 -139346527 + AT_rich Low_complexity Low_complexity 1 43 0 467 281 118 0 chr11 11437143 11437278 -139346275 + MER117 DNA MER1_type 10 160 -37 589 257 76 76 chr11 11437367 11437709 -139345844 - MLT1I LTR MaLR -26 383 42 964 107 5 131 chr11 11437859 11438065 -139345488 + MER4B LTR ERV1 3 182 -428 219 333 0 65 chr11 11438150 11438258 -139345295 - L2 LINE L2 -12 3301 3201 409 308 159 20 chr11 11438286 11438682 -139344871 + L2 LINE L2 1231 1681 -1633 608 304 48 32 chr11 11438804 11439006 -139344547 + L2 LINE L2 1681 1891 -1423 6648 73 45 0 chr11 11439006 11439964 -139343589 - L1PA13 LINE L1 -3 6160 5195 608 304 48 32 chr11 11439964 11440077 -139343476 + L2 LINE L2 1891 2001 -1313 204 40 0 0 chr11 11440167 11440192 -139343361 + (CAAA)n Simple_repeat Simple_repeat 1 25 0 5011 90 9 36 chr11 11440208 11440908 -139342645 + LTR8 LTR ERV1 1 681 -10 571 304 185 5 chr11 11440982 11441393 -139342160 + L2 LINE L2 2445 2929 -385 1672 210 8 20 chr11 11441519 11441919 -139341634 + L1M4 LINE L1 2380 2774 -3372 1045 131 98 61 chr11 11441920 11442014 -139341539 - LTR47A LTR ERVL 0 452 363 1855 166 3 3 chr11 11442014 11442315 -139341238 - AluJo SINE Alu -11 301 1 1045 131 98 61 chr11 11442315 11442434 -139341119 - LTR47A LTR ERVL -89 363 231 2178 136 0 0 chr11 11442551 11442903 -139340650 - AluSx SINE Alu 0 352 1 1241 166 70 23 chr11 11442904 11442998 -139340555 - L1M2 LINE L1 -4847 2002 1914 2548 48 0 13 chr11 11442998 11443310 -139340243 - AluY SINE Alu -3 308 1 1241 166 70 23 chr11 11443310 11443516 -139340037 - L1M2 LINE L1 -4935 1914 1688 1170 193 60 0 chr11 11443533 11443751 -139339802 - AluJo SINE Alu -27 285 55 1930 137 33 10 chr11 11443789 11444088 -139339465 - AluSx SINE Alu -6 306 1 298 215 93 47 chr11 11444088 11444195 -139339358 - L1ME LINE L1 -5956 114 3 8674 175 29 11 chr11 11444223 11445008 -139338545 - L1PB2 LINE L1 0 6151 5382 1699 166 53 3 chr11 11445008 11445291 -139338262 - AluJb SINE Alu -15 297 1 8674 175 29 11 chr11 11445291 11447239 -139336314 - L1PB2 LINE L1 -769 5382 3374 653 283 109 32 chr11 11447267 11447815 -139335738 - L1M4 LINE L1 -1926 4220 3641 254 180 0 33 chr11 11447889 11447950 -139335603 - MIR SINE MIR -94 168 110 782 146 0 36 chr11 11448250 11448387 -139335166 - FLAM_C SINE Alu -1 132 1 738 236 104 73 chr11 11448452 11449012 -139334541 + LTR50 LTR ERVL 1 462 -61 255 213 20 27 chr11 11449131 11449281 -139334272 + CT-rich Low_complexity Low_complexity 1 149 0 383 307 17 28 chr11 11449542 11449721 -139333832 + CT-rich Low_complexity Low_complexity 1 177 0 340 219 73 49 chr11 11450766 11450889 -139332664 - MIR SINE MIR -107 155 30 2056 107 4 0 chr11 11451178 11451450 -139332103 + AluSx SINE Alu 1 273 -39 1125 153 149 89 chr11 11451559 11451840 -139331713 - AluJo SINE Alu -4 298 1 462 291 27 85 chr11 11452695 11452832 -139330721 + MIR SINE MIR 20 137 -125 1900 108 52 4 chr11 11452832 11453101 -139330452 + AluSq SINE Alu 5 286 -27 462 291 27 85 chr11 11453101 11453221 -139330332 + MIR SINE MIR 137 262 0 196 279 0 33 chr11 11453612 11453673 -139329880 - MIR SINE MIR -126 82 24 2094 123 0 7 chr11 11454911 11455204 -139328349 + AluSx SINE Alu 1 291 -21 815 238 33 9 chr11 11455226 11455440 -139328113 - MIR SINE MIR -12 250 32 240 277 117 0 chr11 11455586 11455680 -139327873 - L2 LINE L2 -1 3312 3208 2122 125 3 13 chr11 11456410 11456714 -139326839 + AluSx SINE Alu 1 301 -11 320 137 0 0 chr11 11456862 11456913 -139326640 + Alu SINE Alu 250 300 -2 2607 141 54 21 chr11 11457158 11457570 -139325983 + L1MA9 LINE L1 5815 6247 -65 2199 123 3 0 chr11 11457570 11457872 -139325681 + AluSc SINE Alu 1 303 -6 2607 141 54 21 chr11 11457872 11457941 -139325612 + L1MA9 LINE L1 6247 6312 0 897 315 43 54 chr11 11457973 11458433 -139325120 + MLT1K LTR MaLR 132 586 -2 414 196 9 45 chr11 11458617 11458729 -139324824 + MIR SINE MIR 148 255 -7 1644 156 52 7 chr11 11459284 11459577 -139323976 - AluJb SINE Alu 0 308 4 221 217 14 14 chr11 11459591 11459660 -139323893 + MIR SINE MIR 92 160 -102 820 267 112 21 chr11 11459684 11460059 -139323494 + MLT1I LTR MaLR 1 409 0 279 347 14 4 chr11 11460205 11460346 -139323207 + L1ME4a LINE L1 5455 5596 -617 548 250 96 35 chr11 11460374 11460766 -139322787 + L1ME4a LINE L1 5689 6119 -2 214 170 43 0 chr11 11460797 11460860 -139322693 + (CAGAGA)n Simple_repeat Simple_repeat 1 65 0 1431 203 36 0 chr11 11461123 11461424 -139322129 + MER33 DNA MER1_type 13 324 0 2428 132 54 12 chr11 11462204 11462613 -139320940 + MSTB LTR MaLR 1 426 0 9537 182 19 0 chr11 11462613 11464233 -139319320 + MSTB-int LTR MaLR 1 1651 0 2308 136 39 13 chr11 11464233 11464622 -139318931 + MSTB LTR MaLR 1 399 -27 1299 161 28 0 chr11 11464648 11464859 -139318694 - AluJo SINE Alu -11 301 85 244 105 79 0 chr11 11464860 11464898 -139318655 + MSTB LTR MaLR 386 426 0 2282 107 10 0 chr11 11464954 11465253 -139318300 + AluSx SINE Alu 1 302 -10 227 171 0 100 chr11 11465260 11465330 -139318223 + L1ME4a LINE L1 5369 5431 -690 838 266 119 16 chr11 11465446 11465825 -139317728 + L1ME4a LINE L1 5493 5910 -211 1929 173 73 67 chr11 11466006 11466422 -139317131 + MLT1D LTR MaLR 24 445 -60 1995 149 10 10 chr11 11466422 11466717 -139316836 + AluJb SINE Alu 1 295 -17 1929 173 73 67 chr11 11466717 11466779 -139316774 + MLT1D LTR MaLR 445 505 0 453 19 0 0 chr11 11467420 11467474 -139316079 + (CA)n Simple_repeat Simple_repeat 1 54 0 230 267 0 12 chr11 11467653 11467739 -139315814 + GA-rich Low_complexity Low_complexity 4 88 0 2466 232 65 65 chr11 11468494 11469269 -139314284 - MER21B LTR ERV1 -70 793 19 443 194 9 83 chr11 11469267 11469375 -139314178 - MER21B LTR ERV1 -757 106 7 * 201 74 0 0 chr11 11469475 11469502 -139314051 + (TC)n Simple_repeat Simple_repeat 1 27 0 283 200 31 15 chr11 11469622 11469687 -139313866 - MLT1K LTR MaLR -342 246 181 929 254 88 3 chr11 11469800 11470083 -139313470 - MER46C DNA MER2_type -22 316 10 551 208 0 0 chr11 11470144 11470250 -139313303 + MER5A DNA MER1_type 4 109 -80 235 206 255 10 chr11 11470169 11470271 -139313282 - MER5A DNA MER1_type -16 173 47 * 2454 89 0 0 chr11 11470649 11470953 -139312600 + AluSq SINE Alu 1 304 -9 2326 164 42 22 chr11 11471872 11472220 -139311333 + MLT1C LTR MaLR 1 362 -105 2992 122 106 76 chr11 11472220 11472836 -139310717 - MER51A LTR ERV1 0 634 1 2326 164 42 22 chr11 11472836 11472945 -139310608 + MLT1C LTR MaLR 362 467 0 337 329 122 18 chr11 11473250 11473578 -139309975 + L2 LINE L2 2373 2734 -580 230 345 12 12 chr11 11473878 11473962 -139309591 - L2 LINE L2 -22 3291 3208 * 352 316 207 53 chr11 11473949 11474215 -139309338 + L2 LINE L2 2965 3271 -1 679 281 60 50 chr11 11475020 11475583 -139307970 + L1MC4 LINE L1 7317 8016 -26 886 185 11 34 chr11 11475626 11475804 -139307749 + FRAM SINE Alu 1 173 -3 2433 41 45 0 chr11 11476979 11477269 -139306284 + AluY SINE Alu 1 303 -8 2152 132 3 0 chr11 11477897 11478200 -139305353 - AluSg SINE Alu -6 304 1 333 71 0 0 chr11 11478393 11478435 -139305118 + 5S rRNA rRNA 2 43 -78 1886 142 30 48 chr11 11478629 11478927 -139304626 + L1MB3 LINE L1 5846 6139 -32 4229 102 29 46 chr11 11478927 11479284 -139304269 + L1MA5A LINE L1 5616 5964 -333 2414 68 0 40 chr11 11479284 11479608 -139303945 + AluY SINE Alu 1 311 0 4229 102 29 46 chr11 11479608 11479932 -139303621 + L1MA5A LINE L1 5964 6292 -5 1886 142 30 48 chr11 11479932 11479965 -139303588 + L1MB3 LINE L1 6139 6171 0 401 258 67 8 chr11 11480455 11480575 -139302978 - MIR3 SINE MIR -72 136 10 284 244 24 55 chr11 11480809 11480936 -139302617 + GA-rich Low_complexity Low_complexity 3 125 0 217 273 45 0 chr11 11480999 11481065 -139302488 - L2 LINE L2 -4 3309 3241 1711 195 17 0 chr11 11481133 11481435 -139302118 + AluJo SINE Alu 1 307 -5 308 271 0 0 chr11 11481468 11481553 -139302000 + MIR SINE MIR 92 176 -86 486 282 14 21 chr11 11481804 11481946 -139301607 + MER5A DNA MER1_type 28 168 -21 252 247 84 84 chr11 11481969 11482147 -139301406 + L2 LINE L2 2913 3090 -182 842 161 36 12 chr11 11483233 11483401 -139300152 - MER5A DNA MER1_type 0 189 18 2220 169 111 31 chr11 11484001 11484184 -139299369 - MLT1D LTR MaLR 0 505 338 1668 164 45 14 chr11 11484184 11484470 -139299083 - AluJo SINE Alu -17 295 1 2220 169 111 31 chr11 11484470 11484735 -139298818 - MLT1D LTR MaLR -167 338 21 510 280 78 10 chr11 11484976 11485169 -139298384 - L1ME LINE L1 -301 5820 5615 345 179 36 0 chr11 11485219 11485275 -139298278 - MLT1D LTR MaLR -447 58 1 186 274 51 68 chr11 11485276 11485393 -139298160 + MIR SINE MIR 117 231 -31 204 40 0 0 chr11 11485503 11485528 -139298025 + (TG)n Simple_repeat Simple_repeat 1 25 0 458 312 29 29 chr11 11485623 11485793 -139297760 - MER5B DNA MER1_type -2 176 7 387 0 0 0 chr11 11486628 11486671 -139296882 + (CA)n Simple_repeat Simple_repeat 1 43 0 737 301 7 1 chr11 11486683 11486888 -139296665 - MIR SINE MIR -56 206 2 406 211 24 0 chr11 11487219 11487342 -139296211 + CT-rich Low_complexity Low_complexity 2 127 0 244 122 0 61 chr11 11488123 11488172 -139295381 - MIR SINE MIR -57 151 106 1803 214 52 33 chr11 11488486 11488944 -139294609 + MLT1C LTR MaLR 1 467 0 498 311 80 64 chr11 11489540 11489930 -139293623 + MLT1L LTR MaLR 159 586 -29 3123 190 25 11 chr11 11489930 11490488 -139293065 + MLT1F1 LTR MaLR 1 566 -1 498 311 80 64 chr11 11490488 11490511 -139293042 + MLT1L LTR MaLR 586 607 -8 474 115 26 0 chr11 11491050 11491128 -139292425 - L1MA5 LINE L1 -5 6295 6216 274 339 197 0 chr11 11491823 11491950 -139291603 + L2 LINE L2 3112 3263 -9 639 259 7 0 chr11 11493603 11493750 -139289803 + MER5B DNA MER1_type 1 148 -30 234 235 71 35 chr11 11493691 11493776 -139289777 - MER5A DNA MER1_type -90 99 12 * 1448 230 54 48 chr11 11494491 11494969 -139288584 - HAL1 LINE L1 -6 2501 2021 33641 98 15 58 chr11 11494984 11501342 -139282211 - L1PA7 LINE L1 -67 6087 12 801 264 129 25 chr11 11501357 11501720 -139281833 - HAL1 LINE L1 -475 2032 1632 1053 275 62 10 chr11 11501732 11502023 -139281530 - MER45C DNA AcHobo -647 306 1 372 274 119 79 chr11 11502107 11502381 -139281172 + L1M2 LINE L1 4972 5233 -1079 1890 157 7 3 chr11 11502381 11502668 -139280885 + AluJo SINE Alu 1 288 -24 372 274 119 79 chr11 11502668 11503215 -139280338 + L1M2 LINE L1 5233 5825 -487 2017 132 184 11 chr11 11503232 11503596 -139279957 + MSTA LTR MaLR 1 427 -1 2685 121 2 48 chr11 11503599 11504036 -139279517 + MSTA-int LTR MaLR 3 419 -1161 1007 185 0 0 chr11 11504062 11504219 -139279334 + FRAM SINE Alu 1 153 -23 249 246 109 9 chr11 11504225 11504335 -139279218 + L1M4 LINE L1 5249 5369 -777 6945 145 21 29 chr11 11504364 11505527 -139278026 + MSTA-int LTR MaLR 427 1580 0 2092 128 177 11 chr11 11505527 11505894 -139277659 + MSTA LTR MaLR 1 428 0 5419 247 80 26 chr11 11506715 11508311 -139275242 + L1M3c LINE L1 1359 2968 -4528 * 8661 230 85 13 chr11 11508295 11510990 -139272563 + L1M3c LINE L1 2871 5369 -2196 2221 105 0 13 chr11 11510990 11511294 -139272259 + AluSq SINE Alu 1 300 -13 8661 230 85 13 chr11 11511294 11511481 -139272072 + L1M3c LINE L1 5369 5541 -2024 1801 181 0 25 chr11 11511481 11511795 -139271758 + AluJb SINE Alu 1 306 -6 8661 230 85 13 chr11 11511795 11512070 -139271483 + L1M3c LINE L1 5541 5795 -1770 180 0 0 0 chr11 11512070 11512090 -139271463 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 8661 230 85 13 chr11 11512090 11512224 -139271329 + L1M3c LINE L1 5795 6591 -974 354 45 0 0 chr11 11513070 11513114 -139270439 + (GA)n Simple_repeat Simple_repeat 1 44 0 1020 210 48 24 chr11 11513778 11514026 -139269527 - MIR SINE MIR -7 255 2 324 250 169 29 chr11 11514033 11514169 -139269384 - MIR3 SINE MIR -31 177 23 517 304 78 11 chr11 11514748 11514939 -139268614 - MIR SINE MIR -10 252 49 225 280 0 0 chr11 11515067 11515117 -139268436 + (CATA)n Simple_repeat Simple_repeat 3 52 0 526 339 38 29 chr11 11515139 11515378 -139268175 - MIR SINE MIR 0 262 22 287 354 23 0 chr11 11515488 11515618 -139267935 + L2 LINE L2 2921 3053 -219 482 185 0 0 chr11 11515760 11515841 -139267712 - LTR40a LTR ERVL -7 512 432 180 338 0 0 chr11 11515863 11515931 -139267622 + L2 LINE L2 3203 3270 -2 613 243 37 0 chr11 11516153 11516289 -139267264 + FLAM_A SINE Alu 1 141 -1 256 250 0 44 chr11 11516292 11516360 -139267193 + G-rich Low_complexity Low_complexity 4 68 0 303 229 98 16 chr11 11516406 11516528 -139267025 - FRAM SINE Alu -29 137 6 26 50 0 0 chr11 11516788 11516828 -139266725 + AT_rich Low_complexity Low_complexity 1 40 0 546 281 25 12 chr11 11517018 11517178 -139266375 - MER20B DNA MER1_type -621 162 1 1837 33 0 24 chr11 11517182 11517395 -139266158 + L1PA3 LINE L1 5948 6155 0 3263 190 52 50 chr11 11517531 11518335 -139265218 - L1MD2 LINE L1 -1 6358 5553 2459 68 0 3 chr11 11518360 11518669 -139264884 - AluY SINE Alu -3 308 1 1402 174 39 12 chr11 11518670 11518928 -139264625 - L1MC/D LINE L1 -425 5817 5553 614 234 30 41 chr11 11518945 11519142 -139264411 - L1MC/D LINE L1 -816 5330 5136 25429 87 8 21 chr11 11519242 11522826 -139260727 - L1P LINE L1 -2004 4142 606 460 209 48 0 chr11 11522827 11522932 -139260621 - L1 LINE L1 -813 5333 5224 270 316 13 0 chr11 11523228 11523307 -139260246 - L2 LINE L2 -217 3055 2976 200 256 0 0 chr11 11523442 11523485 -139260068 + L3 LINE CR1 1112 1154 -423 611 245 92 22 chr11 11524056 11524240 -139259313 + Charlie8 DNA MER1_type 306 502 -1915 27 29 0 0 chr11 11525144 11525178 -139258375 + AT_rich Low_complexity Low_complexity 1 34 0 692 252 124 18 chr11 11526929 11527155 -139256398 + MIR SINE MIR 13 262 0 1945 236 35 27 chr11 11528659 11529146 -139254407 + MLT1D LTR MaLR 1 491 -14 3363 195 75 10 chr11 11529790 11530578 -139252975 - L1MC4 LINE L1 0 8042 7204 1308 159 49 4 chr11 11530579 11530987 -139252566 - LTR54 LTR ERV1 0 510 2 1449 209 62 57 chr11 11530988 11531168 -139252385 - L1MC4 LINE L1 -838 7204 7026 2357 99 10 0 chr11 11531168 11531470 -139252083 - AluSq SINE Alu -8 305 1 1449 209 62 57 chr11 11531470 11531713 -139251840 - L1MC4 LINE L1 -1016 7026 6703 1068 153 45 0 chr11 11531715 11531892 -139251661 + AluJo SINE Alu 1 185 -127 518 88 0 0 chr11 11531898 11531966 -139251587 + AluS SINE Alu 23 90 -222 3183 202 39 14 chr11 11531972 11532670 -139250883 - L1MC4a LINE L1 -1779 6029 5315 619 230 0 43 chr11 11532678 11532817 -139250736 - FLAM_A SINE Alu 0 133 1 2304 82 3 7 chr11 11532866 11533160 -139250393 - AluY SINE Alu -18 293 1 219 279 96 39 chr11 11533903 11534007 -139249546 + L2 LINE L2 3150 3259 -13 583 298 47 62 chr11 11534020 11534441 -139249112 - L2 LINE L2 -40 3232 2806 430 302 95 0 chr11 11534441 11534620 -139248933 + MER91A DNA MER1_type 1 196 0 583 298 47 62 chr11 11534620 11534665 -139248888 - L2 LINE L2 -466 2806 2770 844 185 26 32 chr11 11534665 11534854 -139248699 - MER5A DNA MER1_type 0 189 2 583 298 47 62 chr11 11534854 11534887 -139248666 - L2 LINE L2 -502 2770 2738 198 0 0 0 chr11 11535333 11535355 -139248198 + (TG)n Simple_repeat Simple_repeat 2 23 0 964 85 0 14 chr11 11535615 11535756 -139247797 - MER85 DNA T2_type 0 139 1 250 197 79 13 chr11 11536961 11537037 -139246516 + MIR SINE MIR 105 185 -77 700 232 40 15 chr11 11537733 11537931 -139245622 + L1ME3A LINE L1 3 205 -5914 342 0 0 0 chr11 11537934 11537972 -139245581 + (TG)n Simple_repeat Simple_repeat 2 39 0 383 288 37 42 chr11 11538075 11538266 -139245287 + L1ME3A LINE L1 682 871 -5248 1739 107 37 0 chr11 11538391 11538634 -139244919 - AluSc SINE Alu -57 252 1 530 210 64 13 chr11 11538636 11538793 -139244760 + L1ME3A LINE L1 903 1067 -5052 204 97 0 0 chr11 11538796 11538827 -139244726 + (TG)n Simple_repeat Simple_repeat 2 32 0 216 271 0 0 chr11 11538871 11538919 -139244634 + (TG)n Simple_repeat Simple_repeat 1 48 0 650 311 102 44 chr11 11538927 11539894 -139243659 + L1ME3A LINE L1 1131 1746 -744 2386 94 0 3 chr11 11539901 11540208 -139243345 + AluSx SINE Alu 1 306 -6 1010 276 104 42 chr11 11540303 11541261 -139242292 + L1ME3A LINE L1 2237 3254 -2875 1187 268 136 35 chr11 11541412 11541868 -139241685 - REP3 LTR ERV -47 515 14 1029 140 6 0 chr11 11541868 11542039 -139241514 - L1P LINE L1 -1733 4413 4242 226 174 0 0 chr11 11542036 11542082 -139241471 + L1P LINE L1 4803 4848 -1298 * 538 279 124 21 chr11 11542170 11542590 -139240963 + L1ME3A LINE L1 4742 5204 -925 292 272 95 17 chr11 11542615 11542890 -139240663 + L1ME3A LINE L1 5240 5592 -543 1398 218 122 26 chr11 11542893 11543360 -139240193 - LTR33 LTR ERVL 0 521 10 584 299 26 29 chr11 11543384 11543692 -139239861 + L1ME3A LINE L1 5606 5912 -241 22 0 0 0 chr11 11543831 11543853 -139239700 + AT_rich Low_complexity Low_complexity 1 22 0 239 252 36 18 chr11 11543862 11543973 -139239580 + L1MC4 LINE L1 7929 8041 -1 810 244 119 5 chr11 11544061 11544262 -139239291 - MER58A DNA MER1_type 0 224 1 2275 103 0 31 chr11 11544315 11544636 -139238917 - AluSx SINE Alu -1 311 1 230 211 35 18 chr11 11545096 11545153 -139238400 - MLT1G1 LTR MaLR 0 595 538 222 200 0 20 chr11 11545451 11545501 -139238052 + MIR SINE MIR 192 240 -22 439 200 0 12 chr11 11545540 11545620 -139237933 + AluJ/FLAM SINE Alu 4 82 -230 266 158 73 37 chr11 11546068 11546150 -139237403 + (CTGGGG)n Simple_repeat Simple_repeat 5 89 0 931 218 49 0 chr11 11546331 11546556 -139236997 - MIR SINE MIR -11 251 16 387 252 149 7 chr11 11546583 11546735 -139236818 - MIR3 SINE MIR -31 177 4 880 289 42 60 chr11 11547514 11548016 -139235537 + L3 LINE CR1 822 1314 -263 221 312 38 37 chr11 11548018 11548166 -139235387 + MIR SINE MIR 4 153 -83 1867 232 131 77 chr11 11549528 11550847 -139232706 - L1MC5 LINE L1 -398 7957 6525 598 283 48 54 chr11 11550968 11551304 -139232249 - LTR16C LTR ERVL 0 491 158 1646 266 42 24 chr11 11551564 11552113 -139231440 - L1MC5 LINE L1 -1871 6331 5773 595 276 39 6 chr11 11552402 11552583 -139230970 - MIR SINE MIR -71 191 5 230 335 116 6 chr11 11553161 11553334 -139230219 + MIR SINE MIR 56 247 -15 2791 133 22 27 chr11 11554895 11555494 -139228059 - MER4E LTR ERV1 0 766 1 331 280 75 94 chr11 11555760 11556174 -139227379 - L2 LINE L2 -38 3234 2829 965 203 112 0 chr11 11556339 11556536 -139227017 + MER58A DNA MER1_type 1 219 -5 288 297 102 0 chr11 11557276 11557394 -139226159 - L3 LINE CR1 -268 1309 1180 8330 213 47 38 chr11 11558034 11560522 -139223031 - L1MC5 LINE L1 -1147 5393 2929 2363 92 3 0 chr11 11560522 11560825 -139222728 - AluSq SINE Alu -9 304 1 8330 213 47 38 chr11 11560825 11561700 -139221853 - L1MC5 LINE L1 -3611 2929 2063 798 167 8 0 chr11 11561700 11561832 -139221721 + FLAM_C SINE Alu 1 133 0 8330 213 47 38 chr11 11561832 11562242 -139221311 - L1MC5 LINE L1 -4477 2063 1658 2404 95 0 7 chr11 11562242 11562547 -139221006 - AluY SINE Alu -8 303 1 8330 213 47 38 chr11 11562547 11563458 -139220095 - L1MC5 LINE L1 -4882 1658 664 2507 167 142 2 chr11 11563478 11563928 -139219625 + MLT2B2 LTR ERVL 1 513 -2 2196 209 12 39 chr11 11563929 11564416 -139219137 - L1MC5 LINE L1 -6059 481 8 13639 113 56 37 chr11 11565392 11566512 -139217041 + Tigger1 DNA MER2_type 6 1103 -1315 1786 136 73 3 chr11 11566512 11566842 -139216711 + L1MA5 LINE L1 5948 6300 0 13639 113 56 37 chr11 11566842 11567140 -139216413 + Tigger1 DNA MER2_type 1103 1394 -1024 1522 107 236 8 chr11 11567140 11567382 -139216171 - AluSp SINE Alu -14 299 3 13639 113 56 37 chr11 11567382 11568166 -139215387 + Tigger1 DNA MER2_type 1394 2251 -167 981 182 12 0 chr11 11568203 11568368 -139215185 - FRAM SINE Alu -12 164 1 1288 152 0 5 chr11 11568369 11568566 -139214987 + Tigger1 DNA MER2_type 2221 2416 -2 314 224 95 43 chr11 11568811 11568927 -139214626 + MLT2F LTR ERVL 39 160 -503 1630 180 131 13 chr11 11569277 11569490 -139214063 - MLT1C LTR MaLR -34 415 228 213 108 0 0 chr11 11569490 11569527 -139214026 + (TG)n Simple_repeat Simple_repeat 2 38 0 1630 180 131 13 chr11 11569527 11569701 -139213852 - MLT1C LTR MaLR -221 228 1 199 304 167 11 chr11 11569701 11569977 -139213576 - L2 LINE L2 -988 2326 2008 474 237 106 85 chr11 11571470 11571753 -139211800 - LTR16A LTR ERVL -99 351 63 1317 197 66 71 chr11 11571776 11572156 -139211397 + MLT1B LTR MaLR 2 379 -11 393 39 0 0 chr11 11572246 11572297 -139211256 + (TC)n Simple_repeat Simple_repeat 1 51 0 281 340 10 0 chr11 11572406 11572509 -139211044 - MLT1K LTR MaLR -324 264 161 1782 173 0 23 chr11 11572637 11572938 -139210615 + AluJo SINE Alu 1 294 -18 372 261 147 25 chr11 11572946 11573103 -139210450 + MIR SINE MIR 73 248 -14 279 228 38 0 chr11 11573259 11573338 -139210215 - MIR SINE MIR -120 142 61 229 364 70 7 chr11 11574193 11574336 -139209217 + MIR SINE MIR 18 169 -93 1037 241 24 16 chr11 11574562 11574882 -139208671 + L1ME3 LINE L1 5851 6183 -1 207 245 19 0 chr11 11574919 11574972 -139208581 + (TTA)n Simple_repeat Simple_repeat 1 54 0 1233 153 39 39 chr11 11575121 11575350 -139208203 - MER2 DNA MER2_type -113 232 4 360 0 0 0 chr11 11575353 11575393 -139208160 + (TG)n Simple_repeat Simple_repeat 1 40 0 1296 234 124 30 chr11 11575424 11575898 -139207655 + MLT1F1 LTR MaLR 49 567 0 252 247 118 21 chr11 11575898 11575991 -139207562 + MLT1F-int LTR MaLR 1 102 -1269 6773 151 35 42 chr11 11576022 11577273 -139206280 - Ricksha_b DNA DNA 0 1254 13 806 259 17 44 chr11 11577300 11577372 -139206181 + MLT1F-int LTR MaLR 293 365 -1006 1417 209 23 67 chr11 11577372 11577587 -139205966 - MLT1A2 LTR MaLR -4 370 178 2114 136 13 3 chr11 11577587 11577895 -139205658 - AluJb SINE Alu -1 311 1 1417 209 23 67 chr11 11577895 11578066 -139205487 - MLT1A2 LTR MaLR -196 178 1 806 259 17 44 chr11 11578066 11578287 -139205266 + MLT1F-int LTR MaLR 365 578 -793 713 124 0 0 chr11 11578732 11578837 -139204716 + AluSp/q SINE Alu 207 311 -2 596 282 30 101 chr11 11578948 11579384 -139204169 + MLT1F-int LTR MaLR 961 1365 -6 2237 176 79 30 chr11 11579400 11579895 -139203658 + MLT1F LTR MaLR 24 542 0 2246 90 3 30 chr11 11580383 11580683 -139202870 + AluSg SINE Alu 1 292 -18 236 255 53 21 chr11 11580896 11580990 -139202563 + MIR3 SINE MIR 109 205 -3 2366 167 64 52 chr11 11581501 11582015 -139201538 - MLT2B1 LTR ERVL 0 520 1 235 267 171 0 chr11 11583986 11584091 -139199462 + MIR3 SINE MIR 14 136 -72 32 0 0 0 chr11 11584200 11584232 -139199321 + AT_rich Low_complexity Low_complexity 1 32 0 5114 128 16 37 chr11 11584406 11584503 -139199050 + L1MA9 LINE L1 5428 5526 -786 2079 130 0 17 chr11 11584503 11584802 -139198751 - AluSx SINE Alu -18 294 1 5114 128 16 37 chr11 11584802 11585073 -139198480 + L1MA9 LINE L1 5526 5801 -511 7295 123 38 22 chr11 11585073 11585991 -139197562 - Tigger3b DNA MER2_type -1797 1231 288 2376 96 0 6 chr11 11585991 11586304 -139197249 + AluSx SINE Alu 1 311 -1 7295 123 38 22 chr11 11586304 11586597 -139196956 - Tigger3b DNA MER2_type -2740 288 1 186 103 0 0 chr11 11586600 11586629 -139196924 + (CA)n Simple_repeat Simple_repeat 2 30 0 5114 128 16 37 chr11 11586629 11586875 -139196678 + L1MA9 LINE L1 5803 6053 -259 2506 69 3 0 chr11 11586875 11587179 -139196374 - AluSc SINE Alu -4 305 1 5114 128 16 37 chr11 11587179 11587453 -139196100 + L1MA9 LINE L1 6053 6303 -9 802 287 146 21 chr11 11587538 11588128 -139195425 - L1ME4a LINE L1 -6 6115 5447 305 318 26 20 chr11 11588280 11588431 -139195122 - MIR SINE MIR -51 211 60 306 299 37 9 chr11 11588605 11588712 -139194841 + MIR SINE MIR 19 128 -80 617 211 7 35 chr11 11589775 11589917 -139193636 - L2 LINE L2 -3 3310 3173 458 232 138 0 chr11 11590153 11590291 -139193262 - MIR SINE MIR -29 233 77 288 309 62 31 chr11 11591145 11591339 -139192214 - MIR SINE MIR -56 206 7 2335 161 108 68 chr11 11591600 11592145 -139191408 - MLT1F1 LTR MaLR 0 567 1 192 208 21 0 chr11 11593690 11593738 -139189815 + L2 LINE L2 3265 3313 0 496 160 26 0 chr11 11593895 11594052 -139189501 + CT-rich Low_complexity Low_complexity 1 161 0 5917 120 11 6 chr11 11594101 11595871 -139187682 + L1PA14 LINE L1 4411 6161 0 5687 243 156 24 chr11 11595880 11597199 -139186354 - HAL1 LINE L1 -5 2502 1359 2281 58 24 7 chr11 11597199 11597493 -139186060 - AluY SINE Alu -12 299 1 5687 243 156 24 chr11 11597493 11598288 -139185265 - HAL1 LINE L1 -1148 1359 108 389 280 101 32 chr11 11598684 11598873 -139184680 + MIR SINE MIR 5 206 -56 696 229 124 14 chr11 11598892 11599102 -139184451 + MIR SINE MIR 1 233 -29 684 238 99 0 chr11 11599126 11599328 -139184225 + MIR SINE MIR 3 224 -38 272 246 15 23 chr11 11599366 11599496 -139184057 + CT-rich Low_complexity Low_complexity 2 130 0 314 180 0 0 chr11 11599496 11599546 -139184007 - MER66A LTR ERV1 -142 336 287 221 264 0 0 chr11 11600708 11600760 -139182793 + MIR SINE MIR 100 152 -56 321 286 80 9 chr11 11601087 11601199 -139182354 - L2 LINE L2 -39 3233 3114 479 259 62 16 chr11 11601316 11601518 -139182035 + MLT1J LTR MaLR 62 285 -165 287 141 16 0 chr11 11601849 11601913 -139181640 + (TG)n Simple_repeat Simple_repeat 1 65 0 193 361 64 48 chr11 11601922 11602279 -139181274 - L2 LINE L2 -415 2899 2537 592 142 94 9 chr11 11602401 11602538 -139181015 + FLAM_A SINE Alu 4 149 0 791 241 62 18 chr11 11602590 11602814 -139180739 - MIR SINE MIR -21 241 8 272 314 35 12 chr11 11603144 11603230 -139180323 - MIR SINE MIR -162 100 13 222 111 16 32 chr11 11603765 11603828 -139179725 + (TTTTG)n Simple_repeat Simple_repeat 2 63 0 2169 124 15 21 chr11 11604037 11604376 -139179177 + MER1B DNA MER1_type 1 337 0 984 267 65 49 chr11 11604627 11605152 -139178401 + L2 LINE L2 2789 3313 0 367 314 59 8 chr11 11606263 11606381 -139177172 - MIR SINE MIR -133 129 6 1519 190 100 67 chr11 11606640 11607061 -139176492 - LTR41 LTR ERVL -2 771 337 493 175 0 105 chr11 11607137 11607251 -139176302 - LTR41 LTR ERVL -594 179 78 489 162 0 0 chr11 11607269 11607343 -139176210 - AluJ/FLAM SINE Alu -237 75 2 269 148 74 19 chr11 11607387 11607441 -139176112 - LTR41 LTR ERVL -716 57 1 1722 290 87 52 chr11 11607575 11607657 -139175896 - L1MEd LINE L1 -4862 1257 1179 1928 164 7 7 chr11 11607657 11607962 -139175591 - AluSx SINE Alu -7 305 1 1722 290 87 52 chr11 11607962 11607980 -139175573 - L1MEd LINE L1 -4940 1179 1163 2154 101 40 0 chr11 11607980 11608277 -139175276 - AluSp SINE Alu -4 309 1 1722 290 87 52 chr11 11608277 11609497 -139174056 - L1MEd LINE L1 -4956 1163 1 242 289 0 93 chr11 11609583 11609680 -139173873 - MIR3 SINE MIR -116 92 5 1138 223 113 11 chr11 11609778 11610052 -139173501 + AluJo SINE Alu 1 302 0 3676 55 9 0 chr11 11610055 11610512 -139173041 + L1PA7 LINE L1 5693 6153 -1 183 156 0 0 chr11 11610835 11610867 -139172686 + CT-rich Low_complexity Low_complexity 2 33 0 546 286 27 32 chr11 11611291 11611476 -139172077 + MIR SINE MIR 49 232 -30 242 226 0 0 chr11 11612342 11612395 -139171158 - HAL1 LINE L1 -1050 1457 1405 1302 210 5 0 chr11 11612424 11612648 -139170905 - MSTB LTR MaLR 0 426 202 1234 168 36 9 chr11 11612687 11612907 -139170646 - MSTB LTR MaLR -198 228 3 1467 245 33 37 chr11 11612916 11613458 -139170095 - HAL1 LINE L1 -1133 1374 835 689 113 0 75 chr11 11613507 11613611 -139169942 + Charlie5 DNA MER1_type 1 94 -2530 2298 96 0 3 chr11 11613611 11613902 -139169651 + AluSg SINE Alu 1 290 -20 689 113 0 75 chr11 11613902 11613930 -139169623 + Charlie5 DNA MER1_type 94 123 -2501 1598 150 105 3 chr11 11613933 11614286 -139169267 + Charlie5 DNA MER1_type 2236 2624 0 616 286 69 36 chr11 11614392 11614668 -139168885 - HAL1 LINE L1 -2222 285 1 211 361 47 30 chr11 11614787 11614956 -139168597 + L2 LINE L2 2686 2857 -457 242 279 3 0 chr11 11615178 11615253 -139168300 - MIR SINE MIR -62 146 74 385 257 7 73 chr11 11615335 11615471 -139168082 + L2 LINE L2 3137 3263 -9 578 275 79 31 chr11 11616513 11616742 -139166811 + MIR SINE MIR 2 241 -21 759 321 125 15 chr11 11618546 11619019 -139164534 - L3 LINE CR1 -7 1570 1046 221 310 76 33 chr11 11620714 11620898 -139162655 + L3 LINE CR1 1037 1228 -349 305 316 76 6 chr11 11621472 11621630 -139161923 - L2 LINE L2 -256 3057 2889 602 307 117 22 chr11 11621676 11622044 -139161509 + L2 LINE L2 2911 3313 0 264 180 20 0 chr11 11622823 11622873 -139160680 - MLT2F LTR ERVL 0 663 613 232 130 65 32 chr11 11622873 11622996 -139160557 + (TCTA)n Simple_repeat Simple_repeat 1 127 0 1361 286 125 8 chr11 11623018 11623546 -139160007 - MLT2F LTR ERVL -44 619 30 302 240 0 13 chr11 11626097 11626172 -139157381 - L1MCa LINE L1 -4347 2079 2006 300 172 0 0 chr11 11626167 11626225 -139157328 - L1MC4 LINE L1 -1347 6695 6638 * 1730 146 44 14 chr11 11626564 11626858 -139156695 - AluJo SINE Alu -1 311 9 211 271 115 33 chr11 11627011 11627133 -139156420 + L2 LINE L2 3171 3302 -11 309 207 0 0 chr11 11628013 11628095 -139155458 + (CA)n Simple_repeat Simple_repeat 2 83 0 470 275 38 0 chr11 11628130 11628261 -139155292 + L2 LINE L2 3137 3272 0 338 324 84 0 chr11 11629364 11629506 -139154047 + MIR SINE MIR 40 193 -69 278 362 13 34 chr11 11629971 11630120 -139153433 + MER5A DNA MER1_type 44 189 0 203 161 0 0 chr11 11630585 11630616 -139152937 + (CA)n Simple_repeat Simple_repeat 2 32 0 222 200 0 0 chr11 11630666 11630701 -139152852 + L2 LINE L2 3222 3256 -16 334 292 174 0 chr11 11631441 11631585 -139151968 - L3 LINE CR1 -177 1400 1232 1450 209 165 8 chr11 11631587 11631956 -139151597 + MLT1C LTR MaLR 4 430 -37 569 320 221 27 chr11 11631980 11632527 -139151026 - L3 LINE CR1 -357 1220 568 407 298 61 0 chr11 11632529 11632643 -139150910 - L2 LINE L2 0 3272 3152 644 254 26 24 chr11 11633470 11633767 -139149786 + MER93b LTR ERV1 3 353 -20 275 343 71 91 chr11 11634334 11634643 -139148910 + L2 LINE L2 2969 3271 -1 424 232 261 0 chr11 11634666 11634808 -139148745 - MIR SINE MIR -10 252 74 23 68 0 0 chr11 11634884 11634928 -139148625 + AT_rich Low_complexity Low_complexity 1 44 0 1040 232 84 66 chr11 11635030 11635457 -139148096 - LTR37B LTR ERV1 -5 463 29 348 201 96 113 chr11 11635801 11636040 -139147513 - L1MC5 LINE L1 -145 7816 7582 314 349 9 0 chr11 11636050 11636159 -139147394 - L2 LINE L2 -16 3297 3188 706 309 51 0 chr11 11636592 11636809 -139146744 - L3 LINE CR1 -745 832 605 279 0 0 0 chr11 11636892 11636923 -139146630 + (TG)n Simple_repeat Simple_repeat 1 31 0 464 398 36 4 chr11 11637154 11637433 -139146120 - L3 LINE CR1 -1001 576 289 356 300 27 47 chr11 11637883 11638033 -139145520 - MIR3 SINE MIR -23 185 39 264 77 0 0 chr11 11638264 11638303 -139145250 + (CATCC)n Simple_repeat Simple_repeat 5 43 0 859 217 10 44 chr11 11638385 11638466 -139145087 + MER58A DNA MER1_type 29 111 -2309 2918 68 6 0 chr11 11638466 11638818 -139144735 + THE1A LTR MaLR 1 354 -1 859 217 10 44 chr11 11638818 11638939 -139144614 + MER58A DNA MER1_type 111 224 0 2652 105 32 32 chr11 11639942 11640275 -139143278 + LTR23 LTR ERV1 1 336 -101 2095 168 111 137 chr11 11640275 11641021 -139142532 + LTR8A LTR ERV1 1 727 0 2652 105 32 32 chr11 11641021 11641124 -139142429 + LTR23 LTR ERV1 335 437 0 376 232 21 32 chr11 11641132 11641227 -139142326 - MIR SINE MIR 0 262 169 203 138 0 0 chr11 11641699 11641728 -139141825 + (CA)n Simple_repeat Simple_repeat 1 29 0 414 347 16 0 chr11 11641781 11641902 -139141651 - L2 LINE L2 -4 3268 3146 1778 84 0 4 chr11 11642013 11642240 -139141313 + AluY SINE Alu 86 311 0 2246 89 0 25 chr11 11642251 11642566 -139140987 + AluSc SINE Alu 1 307 -2 1339 157 62 7 chr11 11642594 11642868 -139140685 - MER33 DNA MER1_type -27 297 9 394 234 194 34 chr11 11642879 11643175 -139140378 - L2 LINE L2 -207 3065 2736 314 291 68 8 chr11 11643898 11644015 -139139538 + L3 LINE CR1 1312 1435 -142 487 223 66 0 chr11 11645325 11645446 -139138107 - MER103 DNA DNA -17 149 21 610 276 168 0 chr11 11646147 11646343 -139137210 + MIR SINE MIR 33 261 -1 1984 159 51 38 chr11 11646346 11646716 -139136837 - THE1C LTR MaLR 0 375 1 259 296 10 20 chr11 11646945 11647043 -139136510 + MIR SINE MIR 156 252 -10 2489 139 28 14 chr11 11647204 11647563 -139135990 - THE1B LTR MaLR 0 364 1 23 0 0 0 chr11 11647567 11647590 -139135963 + AT_rich Low_complexity Low_complexity 1 23 0 632 246 27 44 chr11 11648166 11648349 -139135204 - MER117 DNA MER1_type 0 197 18 2239 170 88 55 chr11 11648554 11649116 -139134437 - LTR49 LTR ERV1 -15 638 2 14558 154 43 70 chr11 11649124 11652388 -139131165 - LTR49-int LTR ERV1 -3 6328 3154 472 139 139 90 chr11 11652397 11652541 -139131012 - LTR49-int LTR ERV1 -2317 4014 3864 3030 163 27 48 chr11 11652582 11653252 -139130301 - LTR49-int LTR ERV1 -3188 3143 1259 573 157 58 16 chr11 11653252 11653373 -139130180 - LTR49 LTR ERV1 -469 126 1 942 427 19 33 chr11 11653525 11653888 -139129665 + MLT1A2 LTR MaLR 1 358 -16 518 220 60 48 chr11 11654030 11654198 -139129355 + MIR SINE MIR 72 241 -21 184 370 113 35 chr11 11654282 11654485 -139129068 - L2 LINE L2 -236 3036 2818 1986 209 21 24 chr11 11654753 11655174 -139128379 + MER66B LTR ERV1 1 420 -66 24 0 0 0 chr11 11655274 11655298 -139128255 + AT_rich Low_complexity Low_complexity 1 24 0 603 118 0 0 chr11 11655384 11655477 -139128076 + AluSg/x SINE Alu 218 310 0 2376 112 0 0 chr11 11656703 11657015 -139126538 - AluSx SINE Alu 0 312 1 207 0 0 0 chr11 11658210 11658233 -139125320 + (T)n Simple_repeat Simple_repeat 1 23 0 307 73 0 0 chr11 11658283 11658324 -139125229 + L1PBa LINE L1 1741 1781 -5082 551 247 174 26 chr11 11658627 11659012 -139124541 - L1MEc LINE L1 -2884 3331 2890 322 211 33 11 chr11 11659124 11659214 -139124339 + MER66A LTR ERV1 387 478 0 2741 198 19 101 chr11 11659258 11660011 -139123542 + LTR8 LTR ERV1 1 691 0 5321 97 3 20 chr11 11660141 11660844 -139122709 + LTR8 LTR ERV1 1 691 0 586 204 167 19 chr11 11661128 11661290 -139122263 - MER5A DNA MER1_type 0 189 4 5187 161 42 8 chr11 11662104 11663239 -139120314 - L1MB2 LINE L1 -2 6169 4994 703 303 25 29 chr11 11663533 11663777 -139119776 + MIR SINE MIR 19 261 -1 319 230 27 0 chr11 11663797 11663871 -139119682 - MLT1E LTR MaLR 0 593 518 6607 197 29 20 chr11 11663871 11665381 -139118172 + L1M4 LINE L1 3841 5362 -784 485 76 30 0 chr11 11665377 11665443 -139118110 + L1MB8 LINE L1 6070 6137 -41 * 189 0 0 0 chr11 11665464 11665485 -139118068 + (CA)n Simple_repeat Simple_repeat 2 22 0 775 243 123 22 chr11 11665485 11665880 -139117673 - MLT1E LTR MaLR -64 529 1 408 256 48 24 chr11 11666110 11666235 -139117318 - MIR SINE MIR -130 132 5 184 380 14 0 chr11 11666339 11666410 -139117143 - L2 LINE L2 -18 3254 3183 824 251 104 25 chr11 11666453 11666837 -139116716 - L1MEc LINE L1 -3655 2560 2168 1973 142 130 24 chr11 11666837 11667176 -139116377 + THE1C LTR MaLR 1 375 0 824 251 104 25 chr11 11667176 11667265 -139116288 - L1MEc LINE L1 -4047 2168 2087 1729 192 29 35 chr11 11667510 11667854 -139115699 + MER2 DNA MER2_type 2 343 -1 351 235 152 23 chr11 11667860 11668077 -139115476 - L1MEc LINE L1 -5112 1093 849 2543 54 0 0 chr11 11668080 11668378 -139115175 - AluY SINE Alu -13 298 1 322 109 0 0 chr11 11668404 11668450 -139115103 - L1MA9 LINE L1 -38 6274 6229 1848 133 20 51 chr11 11668450 11668804 -139114749 + THE1B LTR MaLR 1 343 -21 3139 223 51 35 chr11 11669738 11670856 -139112697 - L1ME1 LINE L1 -86 6080 4930 597 299 93 29 chr11 11670871 11671397 -139112156 + L1M4 LINE L1 4100 4659 -1487 311 308 0 0 chr11 11671598 11671689 -139111864 - L2 LINE L2 -631 2683 2593 608 180 29 22 chr11 11671812 11671951 -139111602 - LTR41 LTR ERVL -633 140 1 2768 144 36 0 chr11 11672189 11672606 -139110947 + MSTB1 LTR MaLR 1 432 0 1047 318 75 20 chr11 11672634 11673278 -139110275 - L2 LINE L2 -40 3232 1835 327 273 23 53 chr11 11673365 11673497 -139110056 - MER103 DNA DNA -1 165 38 210 231 0 0 chr11 11676187 11676252 -139107301 + (TTTA)n Simple_repeat Simple_repeat 1 65 0 339 339 48 32 chr11 11676287 11676411 -139107142 - L2 LINE L2 0 3272 3147 194 167 83 21 chr11 11679297 11679345 -139104208 + MER5B DNA MER1_type 2 52 -126 1303 300 103 25 chr11 11680392 11681186 -139102367 + HAL1b LINE L1 56 911 -437 190 222 0 22 chr11 11681432 11681477 -139102076 + MIR SINE MIR 200 243 -19 1834 141 4 7 chr11 11681479 11681749 -139101804 - AluSx SINE Alu -43 269 1 221 261 6 78 chr11 11682081 11682261 -139101292 + T-rich Low_complexity Low_complexity 2 168 0 769 83 0 0 chr11 11682947 11683043 -139100510 + L1PA3 LINE L1 2 97 -6049 * 32752 40 0 6 chr11 11683042 11684288 -139099265 + L1PA3 LINE L1 600 1851 -4295 8103 27 0 4 chr11 11684288 11685643 -139097910 + L1PA3 LINE L1 4806 6152 -3 32752 40 0 6 chr11 11685643 11688345 -139095208 + L1PA3 LINE L1 1851 4526 -1620 5757 183 50 16 chr11 11688445 11690880 -139092673 - L1PBb LINE L1 -3025 3178 658 308 300 106 33 chr11 11691018 11691198 -139092355 + MIR SINE MIR 68 260 -2 268 256 11 44 chr11 11691419 11691509 -139092044 + MER102b DNA MER1_type 232 318 -23 1101 286 66 40 chr11 11691588 11692502 -139091051 + L1MC4a LINE L1 747 1715 -4595 4879 264 81 46 chr11 11692782 11693379 -139090174 + L1MC4a LINE L1 4499 5074 -2717 2417 52 35 0 chr11 11693379 11693665 -139089888 - AluY SINE Alu -14 297 2 4879 264 81 46 chr11 11693665 11695448 -139088105 + L1MC4a LINE L1 5074 6980 -811 203 88 29 0 chr11 11695448 11695482 -139088071 + (TAGA)n Simple_repeat Simple_repeat 3 37 0 4879 264 81 46 chr11 11695482 11695711 -139087842 + L1MC4a LINE L1 6980 7200 -591 1119 240 78 35 chr11 11695838 11696322 -139087231 + L1MEd LINE L1 2231 2735 -3394 192 200 0 0 chr11 11697267 11697307 -139086246 + (TG)n Simple_repeat Simple_repeat 2 41 0 385 236 236 56 chr11 11697972 11698167 -139085386 - L2 LINE L2 -337 2977 2748 1510 150 4 4 chr11 11698293 11698519 -139085034 - AluSx SINE Alu -86 226 1 377 325 8 16 chr11 11698519 11698645 -139084908 - L2 LINE L2 -249 3023 2899 378 283 33 25 chr11 11700039 11700159 -139083394 + L2 LINE L2 3193 3313 0 1048 239 147 21 chr11 11700204 11700585 -139082968 - LTR33 LTR ERVL -3 518 90 970 177 111 5 chr11 11700720 11700918 -139082635 + MER20 DNA MER1_type 1 219 0 304 276 69 26 chr11 11701543 11701659 -139081894 - MIR SINE MIR -77 185 65 196 222 44 0 chr11 11701904 11701949 -139081604 - L2 LINE L2 -3 3310 3264 540 232 139 0 chr11 11702051 11702202 -139081351 - MIR SINE MIR -12 250 79 1476 167 63 20 chr11 11702216 11702516 -139081037 + L1MB3 LINE L1 5828 6140 -43 2260 80 14 0 chr11 11702519 11702808 -139080745 + AluY SINE Alu 1 293 -18 550 30 0 0 chr11 11702880 11702946 -139080607 - L1PA4 LINE L1 -3 6152 6087 288 258 45 22 chr11 11703007 11703096 -139080457 + L2 LINE L2 3180 3270 -2 287 91 0 0 chr11 11703136 11703180 -139080373 + L1MB4 LINE L1 6136 6179 -1 1992 203 17 17 chr11 11703278 11703692 -139079861 - MLT2D LTR ERVL 0 414 1 2160 110 3 13 chr11 11704278 11704578 -139078975 + AluSx SINE Alu 1 297 -15 284 326 160 22 chr11 11705744 11705925 -139077628 - MIR SINE MIR -23 239 34 314 304 36 9 chr11 11706847 11706959 -139076594 + MIR SINE MIR 26 140 -122 764 187 122 75 chr11 11707283 11707375 -139076178 - MER58A DNA MER1_type -2196 224 138 2267 151 14 38 chr11 11707375 11707745 -139075808 - MLT1A1 LTR MaLR -4 361 1 764 187 122 75 chr11 11707745 11707866 -139075687 - MER58A DNA MER1_type -2282 138 1 381 173 12 12 chr11 11708007 11708088 -139075465 - L1ME3 LINE L1 -215 5947 5867 586 275 20 64 chr11 11708110 11708361 -139075192 - L1ME3 LINE L1 -403 5767 5528 1212 209 63 54 chr11 11708367 11708867 -139074686 - MER34B LTR ERV1 -6 559 5 759 265 34 32 chr11 11708877 11709344 -139074209 - L1ME3 LINE L1 -634 5528 5056 1427 240 21 24 chr11 11709658 11709996 -139073557 - LTR27 LTR ERV1 -1 635 299 298 203 16 0 chr11 11709970 11710034 -139073519 - LTR1 LTR ERV1 -600 185 121 * 272 105 0 0 chr11 11710047 11710085 -139073468 - MER61B LTR ERV1 -286 139 102 * 893 188 0 18 chr11 11710071 11710241 -139073312 - LTR28 LTR ERV1 -853 167 1 2028 163 98 21 chr11 11710241 11710659 -139072894 + MLT1D LTR MaLR 56 505 0 213 94 0 0 chr11 11710992 11711024 -139072529 + (CA)n Simple_repeat Simple_repeat 1 32 0 32 0 0 0 chr11 11711760 11711792 -139071761 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chr11 11712132 11712160 -139071393 + AT_rich Low_complexity Low_complexity 1 28 0 860 281 39 17 chr11 11714019 11714378 -139069175 - LTR16A LTR ERVL 0 450 84 1609 188 32 0 chr11 11714985 11715267 -139068286 + AluJb SINE Alu 1 291 -21 401 287 8 25 chr11 11715291 11715413 -139068140 + MIR3 SINE MIR 4 123 -85 954 222 236 33 chr11 11716230 11716595 -139066958 + MLT1E LTR MaLR 1 439 -154 392 352 57 0 chr11 11716628 11716787 -139066766 - MIR SINE MIR -48 214 47 810 249 46 10 chr11 11717103 11717300 -139066253 - MIR SINE MIR -30 232 29 2415 165 17 40 chr11 11717946 11718351 -139065202 + MSTD LTR MaLR 1 396 0 11052 171 11 9 chr11 11718932 11721603 -139061950 + L1PB3 LINE L1 3146 5823 -331 2091 125 0 0 chr11 11721603 11721907 -139061646 + AluSc SINE Alu 1 304 0 11052 171 11 9 chr11 11721907 11722238 -139061315 + L1PB3 LINE L1 5823 6152 -2 812 121 14 57 chr11 11723515 11723655 -139059898 + L1MA9 LINE L1 6179 6312 0 3898 132 32 10 chr11 11724541 11725126 -139058427 - MER7C DNA MER2_type 0 602 5 210 71 0 0 chr11 11725602 11725630 -139057923 + (GGGA)n Simple_repeat Simple_repeat 3 30 0 699 204 25 46 chr11 11725729 11725925 -139057628 + LTR33 LTR ERVL 330 521 0 780 189 18 92 chr11 11726264 11726492 -139057061 + L1MD3 LINE L1 7777 7987 -8 711 292 89 57 chr11 11726802 11727241 -139056312 + MLT1L LTR MaLR 2 454 -161 282 73 0 0 chr11 11728282 11728323 -139055230 + (CAT)n Simple_repeat Simple_repeat 1 41 0 201 294 0 0 chr11 11728377 11728428 -139055125 - MIR SINE MIR -32 230 180 193 291 164 9 chr11 11728577 11728687 -139054866 - MIR SINE MIR -75 187 61 609 253 123 113 chr11 11729419 11729948 -139053605 - LTR67 LTR ERVL 0 557 24 739 295 32 14 chr11 11729987 11730272 -139053281 - L1M4 LINE L1 -2169 3977 3688 192 227 45 0 chr11 11730478 11730522 -139053031 - L2 LINE L2 -6 3266 3221 219 69 0 0 chr11 11730769 11730798 -139052755 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 230 187 213 0 chr11 11731053 11731128 -139052425 + MIR SINE MIR 71 161 -101 274 279 0 0 chr11 11731914 11731982 -139051571 + MIR SINE MIR 68 135 -73 323 302 35 0 chr11 11732637 11732753 -139050800 - MIR3 SINE MIR -46 162 43 438 245 131 76 chr11 11733494 11733731 -139049822 - MIR SINE MIR -1 261 12 538 327 38 44 chr11 11733790 11734313 -139049240 - L2 LINE L2 -411 2903 2384 472 255 167 14 chr11 11734965 11735296 -139048257 + LTR16A LTR ERVL 23 450 0 361 269 67 15 chr11 11735297 11735431 -139048122 + MLT2F LTR ERVL 1 141 -522 1131 171 136 17 chr11 11735490 11735777 -139047776 + MLT2F LTR ERVL 303 623 -40 1402 220 83 40 chr11 11737084 11737545 -139046008 + MLT1D LTR MaLR 21 387 -3 216 329 79 13 chr11 11737792 11737944 -139045609 + MIR SINE MIR 80 241 -21 878 185 21 85 chr11 11738223 11738412 -139045141 - MER45A DNA AcHobo 0 178 2 316 266 18 18 chr11 11738764 11738877 -139044676 - MIR SINE MIR -56 206 94 316 269 74 34 chr11 11738971 11739120 -139044433 - MIR SINE MIR -48 214 60 348 286 202 0 chr11 11739444 11739622 -139043931 + MIR SINE MIR 40 253 -9 316 350 16 0 chr11 11739921 11740044 -139043509 + MIR3 SINE MIR 32 156 -52 2253 115 0 3 chr11 11740047 11740343 -139043210 - AluSg SINE Alu -15 295 1 7642 30 2 0 chr11 11740519 11741998 -139041555 + L1PA4 LINE L1 4672 6152 -3 180 143 0 0 chr11 11742483 11742518 -139041035 + L2 LINE L2 3270 3304 -9 14662 191 26 7 chr11 11742612 11743052 -139040501 - L1P LINE L1 -1291 4855 4425 2055 142 0 16 chr11 11743052 11743369 -139040184 - AluSx SINE Alu 0 312 1 14662 191 26 7 chr11 11743369 11745932 -139037621 - L1P LINE L1 -1721 4425 1795 642 226 14 14 chr11 11745932 11746078 -139037475 - MER58 DNA MER1_type -2274 146 1 1141 148 181 68 chr11 11747012 11747337 -139036216 + THE1B LTR MaLR 1 362 -2 558 232 85 12 chr11 11747718 11747882 -139035671 + MER5B DNA MER1_type 3 178 0 2879 257 64 31 chr11 11749348 11750708 -139032845 - L1ME3A LINE L1 0 6170 4755 1166 209 93 11 chr11 11750731 11751086 -139032467 - L1ME3A LINE L1 -1505 4641 4258 1493 198 112 34 chr11 11751087 11751470 -139032083 - MLT1D LTR MaLR 0 505 93 1600 171 21 21 chr11 11751470 11751756 -139031797 + LTR32 LTR ERVL 15 300 -171 226 259 120 28 chr11 11751760 11751868 -139031685 - L1M4 LINE L1 -1228 4918 4801 505 229 97 21 chr11 11751992 11752136 -139031417 + LTR32 LTR ERVL 317 471 0 261 212 26 142 chr11 11752136 11752246 -139031307 - MLT1D LTR MaLR -408 97 1 228 265 44 0 chr11 11752247 11752315 -139031238 - L1ME3A LINE L1 -1890 4256 4186 266 310 69 48 chr11 11752323 11752468 -139031085 - MIR SINE MIR -113 149 2 332 276 29 19 chr11 11752670 11752775 -139030778 + MIR SINE MIR 40 145 -63 299 236 154 8 chr11 11753069 11753192 -139030361 - L2 LINE L2 -214 3058 2918 241 280 20 30 chr11 11753865 11753965 -139029588 + L3 LINE CR1 1277 1375 -202 314 164 66 0 chr11 11755170 11755231 -139028322 - L2 LINE L2 -12 3301 3237 * 463 248 16 8 chr11 11755219 11755344 -139028209 + L3 LINE CR1 1379 1504 -73 185 305 12 49 chr11 11755535 11755617 -139027936 - MIR SINE MIR -93 115 37 710 228 175 16 chr11 11755768 11756014 -139027539 + MER45C DNA AcHobo 1 285 -668 484 303 88 44 chr11 11756163 11756437 -139027116 + MER45C DNA AcHobo 487 772 -181 1714 162 62 3 chr11 11756568 11756876 -139026677 + MER45B DNA AcHobo 715 1040 0 432 217 17 35 chr11 11858016 11858131 -138925422 - L1ME2 LINE L1 0 6164 6052 225 281 0 0 chr11 11858629 11858693 -138924860 - MLT1D LTR MaLR -438 67 4 2449 83 0 22 chr11 11858841 11859153 -138924400 + AluSg SINE Alu 1 305 -5 352 315 94 10 chr11 11859267 11859470 -138924083 + MIR SINE MIR 41 260 -2 521 266 189 0 chr11 11859787 11859956 -138923597 + MIR SINE MIR 6 206 -56 1307 183 0 5 chr11 11863310 11863534 -138920019 + MLT1A1 LTR MaLR 143 365 0 227 233 0 0 chr11 11863534 11863577 -138919976 + Charlie8 DNA MER1_type 218 260 -2157 860 231 58 24 chr11 11863646 11864091 -138919462 - MLT1F1 LTR MaLR 0 567 1 230 276 0 26 chr11 11864094 11864170 -138919383 + MIR SINE MIR 183 256 -6 573 286 87 12 chr11 11864177 11864418 -138919135 - MIR SINE MIR -2 260 2 1209 196 84 42 chr11 11864673 11865010 -138918543 - MLT1A1 LTR MaLR -12 353 1 202 304 29 53 chr11 11865027 11865198 -138918355 + L2 LINE L2 2814 2980 -292 514 124 21 21 chr11 11866068 11866165 -138917388 + MER103 DNA DNA 25 121 -45 465 306 23 23 chr11 11866741 11866914 -138916639 - MIR SINE MIR -31 231 59 219 69 0 0 chr11 11866931 11866960 -138916593 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 3537 59 9 0 chr11 11867457 11867900 -138915653 - L1PA8 LINE L1 -19 6153 5707 231 222 100 33 chr11 11868077 11868167 -138915386 + L2 LINE L2 3168 3263 -9 385 328 15 23 chr11 11870033 11870164 -138913389 + MIR3 SINE MIR 3 132 -76 210 341 24 0 chr11 11870367 11870449 -138913104 - L2 LINE L2 -6 3307 3224 595 238 72 0 chr11 11870609 11870802 -138912751 - L1ME3A LINE L1 0 6170 5964 1558 241 59 16 chr11 11871782 11872276 -138911277 + HAL1 LINE L1 1420 1934 -573 1120 236 79 57 chr11 11872383 11872888 -138910665 + LTR33A LTR ERVL 2 517 -6 405 273 102 44 chr11 11872893 11873168 -138910385 + HAL1 LINE L1 2079 2369 -138 557 268 162 0 chr11 11873273 11873452 -138910101 + MIR SINE MIR 34 241 -21 374 264 64 9 chr11 11873779 11873889 -138909664 - MIR SINE MIR -128 134 19 266 338 0 2 chr11 11874367 11874470 -138909083 - L2 LINE L2 -274 2998 2897 251 368 14 14 chr11 11875458 11875602 -138907951 + MIR SINE MIR 10 153 -109 722 257 31 62 chr11 11875616 11875842 -138907711 + MIR SINE MIR 40 258 -4 183 233 0 0 chr11 11875887 11875930 -138907623 + L2 LINE L2 3271 3313 0 688 217 32 6 chr11 11876080 11876237 -138907316 - MER63 DNA MER1_type -272 788 628 184 203 106 114 chr11 11876914 11877037 -138906516 - MER5B DNA MER1_type -56 122 1 552 196 101 34 chr11 11877688 11877836 -138905717 + MER5A DNA MER1_type 13 170 -19 609 306 107 10 chr11 11877862 11878068 -138905485 + MIR SINE MIR 5 230 -32 864 265 60 36 chr11 11878272 11878525 -138905028 - LTR16C LTR ERVL 0 491 227 2339 177 64 11 chr11 11878525 11878965 -138904588 - MLT1C LTR MaLR 0 467 5 864 265 60 36 chr11 11878965 11879047 -138904506 - LTR16C LTR ERVL -264 227 148 2680 127 16 45 chr11 11879054 11879112 -138904441 + MSTB1 LTR MaLR 1 59 -373 2564 61 0 0 chr11 11879112 11879408 -138904145 + AluY SINE Alu 1 296 -15 2680 127 16 45 chr11 11879408 11879790 -138903763 + MSTB1 LTR MaLR 59 428 -4 1421 153 39 49 chr11 11879862 11880105 -138903448 - MLT1A1 LTR MaLR 0 365 124 903 224 124 59 chr11 11880105 11880444 -138903109 + MLT1A1 LTR MaLR 1 361 -4 1421 153 39 49 chr11 11880444 11880508 -138903045 - MLT1A1 LTR MaLR -241 124 61 204 245 0 0 chr11 11880754 11880803 -138902750 + A-rich Low_complexity Low_complexity 1 49 0 196 345 12 12 chr11 11882635 11882719 -138900834 - MIR SINE MIR -133 129 46 981 328 121 31 chr11 11883110 11883753 -138899800 - L3 LINE CR1 -22 1555 855 795 263 96 82 chr11 11884019 11884622 -138898931 + L2 LINE L2 2536 3152 -161 486 0 0 0 chr11 11884622 11884676 -138898877 + (CA)n Simple_repeat Simple_repeat 2 55 0 795 263 96 82 chr11 11884676 11884841 -138898712 + L2 LINE L2 3152 3313 0 212 210 0 16 chr11 11885034 11885096 -138898457 + (CATATA)n Simple_repeat Simple_repeat 2 62 0 29 0 0 0 chr11 11885255 11885284 -138898269 + AT_rich Low_complexity Low_complexity 1 29 0 1996 131 3 3 chr11 11885831 11886136 -138897417 + AluSx SINE Alu 1 305 -7 487 291 35 8 chr11 11887609 11887766 -138895787 + MIR SINE MIR 32 194 -65 583 189 11 105 chr11 11887788 11887978 -138895575 + MER20 DNA MER1_type 47 218 -1 267 214 0 0 chr11 11890175 11890245 -138893308 + (CCA)n Simple_repeat Simple_repeat 3 72 0 200 328 0 0 chr11 11891062 11891123 -138892430 + L2 LINE L2 3210 3270 -2 239 408 8 0 chr11 11891414 11891539 -138892014 - MIR SINE MIR -63 145 20 722 285 91 30 chr11 11892375 11892673 -138890880 - L2 LINE L2 -12 3301 2986 529 200 44 37 chr11 11893560 11893695 -138889858 + L2 LINE L2 3173 3308 -5 377 338 36 0 chr11 11894172 11894311 -138889242 + MIR3 SINE MIR 35 178 -30 257 172 299 11 chr11 11894415 11894502 -138889051 + MER81 DNA DNA 1 112 -2 245 320 90 0 chr11 11894516 11894616 -138888937 + L2 LINE L2 3160 3268 -4 233 348 144 0 chr11 11896238 11896356 -138887197 + L2 LINE L2 3138 3272 0 1556 94 29 1 chr11 11896800 11897156 -138886397 - L1P4 LINE L1 -685 5481 5114 420 240 13 87 chr11 11897265 11897415 -138886138 + MIR3 SINE MIR 32 170 -38 286 285 46 31 chr11 11897436 11897566 -138885987 + MLT1J2 LTR MaLR 47 178 -231 2230 167 91 5 chr11 11897601 11898021 -138885532 + MLT1C LTR MaLR 6 461 -6 1406 232 16 27 chr11 11898127 11898493 -138885060 + LTR37B LTR ERV1 6 367 -101 418 151 161 0 chr11 11898777 11898870 -138884683 + MLT1C LTR MaLR 152 259 -208 227 382 34 0 chr11 11898902 11898991 -138884562 - L3 LINE CR1 -3 1574 1483 245 315 74 19 chr11 11899099 11899207 -138884346 - L3 LINE CR1 -321 1256 1143 686 191 85 163 chr11 11899213 11899496 -138884057 - MIR SINE MIR 0 262 2 277 269 0 0 chr11 11899643 11899695 -138883858 + MER91 DNA MER1_type 87 138 -2 500 279 125 5 chr11 11900550 11900758 -138882795 + L1ME3 LINE L1 5927 6159 -3 2145 112 0 7 chr11 11900928 11901231 -138882322 - AluSx SINE Alu -11 301 1 829 253 51 39 chr11 11901397 11901654 -138881899 - MIR SINE MIR -2 260 1 1046 212 5 0 chr11 11901842 11902067 -138881486 + L1ME3A LINE L1 5356 5589 -567 1322 209 66 50 chr11 11902068 11902432 -138881121 - MLT1A2 LTR MaLR -4 370 1 2152 217 33 20 chr11 11902432 11902990 -138880563 - MLT1-int LTR MaLR 0 1735 679 572 242 43 30 chr11 11903054 11903282 -138880271 - MLT1-int LTR MaLR -489 882 561 1236 192 29 57 chr11 11903282 11903563 -138879990 + MLT1A2 LTR MaLR 98 370 -4 1276 250 7 0 chr11 11903567 11903859 -138879694 + L1ME3A LINE L1 5582 5875 -295 * 1846 89 30 11 chr11 11903856 11904209 -138879344 - L1PB2 LINE L1 -619 5532 5169 4675 76 2 22 chr11 11904210 11904852 -138878701 + L1PB2 LINE L1 5521 6149 -2 23 0 0 0 chr11 11904852 11904875 -138878678 + AT_rich Low_complexity Low_complexity 1 23 0 238 299 13 0 chr11 11904875 11904952 -138878601 + L1ME3A LINE L1 5877 5954 -210 332 242 33 0 chr11 11904964 11905055 -138878498 + L1ME3A LINE L1 6077 6170 0 2386 73 0 0 chr11 11905368 11905669 -138877884 - AluY SINE Alu -10 301 1 956 215 5 20 chr11 11908682 11908882 -138874671 - MIR SINE MIR -64 198 2 207 173 0 0 chr11 11910350 11910402 -138873151 + (TG)n Simple_repeat Simple_repeat 1 52 0 340 307 102 15 chr11 11910896 11910984 -138872569 - MIR3 SINE MIR -6 202 96 1945 118 0 50 chr11 11910984 11911307 -138872246 + AluSx SINE Alu 1 307 -5 340 307 102 15 chr11 11911307 11911355 -138872198 - MIR3 SINE MIR -112 96 54 705 230 18 6 chr11 11911375 11911540 -138872013 + MER5A DNA MER1_type 5 171 -18 412 153 10 58 chr11 11912633 11912730 -138870823 - MSTB2 LTR MaLR 0 457 279 2018 181 41 58 chr11 11913308 11913822 -138869731 + MLT1D LTR MaLR 1 505 0 730 265 73 32 chr11 11914439 11914658 -138868895 + MIR SINE MIR 35 262 0 331 304 82 15 chr11 11914694 11914829 -138868724 - MIR SINE MIR -6 256 113 227 338 136 43 chr11 11914860 11915162 -138868391 + L2 LINE L2 2943 3272 0 241 174 0 101 chr11 11915359 11915428 -138868125 - MIR SINE MIR -169 93 32 392 290 131 15 chr11 11917433 11917589 -138865964 - MIR SINE MIR -61 147 3 588 234 68 78 chr11 11918780 11918972 -138864581 - MIR SINE MIR -56 206 17 2280 79 0 3 chr11 11919674 11919977 -138863576 + AluY SINE Alu 1 302 -9 230 296 56 24 chr11 11920185 11920310 -138863243 + L2 LINE L2 3143 3271 -1 287 328 156 46 chr11 11921460 11921762 -138861791 - L2 LINE L2 -25 3247 2913 2022 118 0 3 chr11 11922024 11922320 -138861233 - AluSg SINE Alu -15 295 1 402 316 128 5 chr11 11922647 11922843 -138860710 - MIR SINE MIR -10 252 33 234 208 0 0 chr11 11924113 11924161 -138859392 - MIR SINE MIR -118 144 97 798 352 54 31 chr11 11924798 11925375 -138858178 + L2 LINE L2 2247 2836 -478 241 320 67 52 chr11 11928235 11928429 -138855124 - MIR SINE MIR -18 244 48 1473 256 60 14 chr11 11928801 11929247 -138854306 + MLT1C LTR MaLR 1 467 0 873 278 40 86 chr11 11929582 11930469 -138853084 + L1MEd LINE L1 660 1545 -4765 311 253 11 11 chr11 11932243 11932338 -138851215 - LTR67 LTR ERVL -5 552 458 5460 76 10 0 chr11 11932796 11933505 -138850048 + L1PA8A LINE L1 5416 6131 0 3541 224 73 60 chr11 11933552 11934834 -138848719 - L1MC5 LINE L1 -60 7901 6589 186 43 0 0 chr11 11934834 11934857 -138848696 + (TTA)n Simple_repeat Simple_repeat 3 25 0 3541 224 73 60 chr11 11934857 11935175 -138848378 - L1MC5 LINE L1 -1372 6589 6277 25 75 0 0 chr11 11935232 11935285 -138848268 + AT_rich Low_complexity Low_complexity 1 53 0 1803 272 82 25 chr11 11935443 11936141 -138847412 - L1MC5 LINE L1 -747 5399 5154 189 0 0 0 chr11 11936141 11936162 -138847391 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1803 272 82 25 chr11 11936162 11936604 -138846949 - L1MC5 LINE L1 -992 5154 4738 277 316 158 5 chr11 11936791 11936981 -138846572 + L3 LINE CR1 1244 1462 -115 993 260 13 13 chr11 11937030 11937265 -138846288 - MIR SINE MIR -2 260 26 195 292 0 0 chr11 11937295 11937343 -138846210 + L3 LINE CR1 433 480 -1097 192 273 0 0 chr11 11937414 11937458 -138846095 - L2 LINE L2 -90 3182 3139 320 294 65 92 chr11 11937695 11938096 -138845457 + L1M4 LINE L1 3126 3515 -2631 224 315 11 11 chr11 11938209 11938298 -138845255 - L2 LINE L2 -188 3084 2996 275 336 202 0 chr11 11938520 11938728 -138844825 - MIR SINE MIR -12 250 1 351 44 0 0 chr11 11939654 11939699 -138843854 + (TG)n Simple_repeat Simple_repeat 2 46 0 606 163 31 148 chr11 11940583 11940779 -138842774 + MER5B DNA MER1_type 6 178 0 358 232 0 80 chr11 11940789 11940901 -138842652 - MER5A DNA MER1_type -1 188 86 200 310 85 85 chr11 11942375 11942633 -138840920 + L2 LINE L2 3006 3263 -9 231 297 249 12 chr11 11944074 11944239 -138839314 + L2 LINE L2 3068 3271 -1 210 333 0 0 chr11 11944617 11944689 -138838864 - MIR SINE MIR -133 129 58 307 336 32 8 chr11 11945624 11945749 -138837804 - MIR SINE MIR -28 234 107 1025 181 0 0 chr11 11945771 11945937 -138837616 + FRAM SINE Alu 1 166 0 2184 134 3 0 chr11 11946708 11947013 -138836540 + AluSx SINE Alu 1 306 -6 577 341 182 0 chr11 11947099 11947579 -138835974 - L2 LINE L2 -225 3088 2508 723 208 104 20 chr11 11948154 11948356 -138835197 + MIR SINE MIR 7 225 -37 618 290 86 14 chr11 11948517 11948738 -138834815 + MIR SINE MIR 20 256 -6 2025 117 7 23 chr11 11948974 11949273 -138834280 + AluSq SINE Alu 1 294 -19 318 229 43 43 chr11 11951235 11951327 -138832226 + MIR SINE MIR 112 232 -30 182 283 117 0 chr11 11951327 11951387 -138832166 + MIR SINE MIR 178 244 -18 290 306 54 108 chr11 11952327 11952808 -138830745 + L2 LINE L2 2818 3272 0 213 132 0 0 chr11 11953301 11953339 -138830214 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 193 328 16 0 chr11 11953850 11953914 -138829639 + MIR SINE MIR 79 143 -65 27 0 0 0 chr11 11953926 11953953 -138829600 + AT_rich Low_complexity Low_complexity 1 27 0 2208 96 3 0 chr11 11954105 11954387 -138829166 - AluSp SINE Alu -10 303 21 311 229 209 9 chr11 11954515 11954620 -138828933 - L2 LINE L2 0 3272 3147 537 272 69 26 chr11 11954829 11955061 -138828492 + LTR16C LTR ERVL 2 243 -248 193 275 0 72 chr11 11955067 11955136 -138828417 + MIR SINE MIR 117 180 -82 335 263 21 81 chr11 11955946 11956132 -138827421 - MIR SINE MIR 0 262 88 357 353 43 0 chr11 11957115 11957231 -138826322 + L2 LINE L2 3134 3254 -18 247 298 48 0 chr11 11958226 11958310 -138825243 - L3 LINE CR1 -293 1284 1197 492 294 206 0 chr11 11958315 11958529 -138825024 - MIR SINE MIR 0 262 5 547 347 63 0 chr11 11958622 11958861 -138824692 - L3 LINE CR1 -498 1079 826 530 300 48 36 chr11 11958994 11959226 -138824327 + MIR SINE MIR 3 239 -23 675 212 14 20 chr11 11959329 11959475 -138824078 - MER45A DNA AcHobo 0 178 34 1535 234 52 41 chr11 11959508 11959992 -138823561 - MLT1D LTR MaLR -13 492 4 484 200 17 35 chr11 11960897 11961012 -138822541 - L1ME2 LINE L1 0 6164 6052 436 125 0 0 chr11 11961510 11961574 -138821979 - MLT1D LTR MaLR -438 67 4 266 292 0 28 chr11 11961981 11962053 -138821500 + L2 LINE L2 3203 3272 0 741 252 80 25 chr11 11962706 11962944 -138820609 + MIR SINE MIR 2 252 -10 314 247 71 11 chr11 11963626 11963727 -138819826 + MIR SINE MIR 44 150 -73 1017 259 64 0 chr11 11964133 11964399 -138819154 + L2 LINE L2 2524 2806 -508 789 178 25 18 chr11 11964412 11964575 -138818978 - MER5B DNA MER1_type -12 166 3 497 206 22 37 chr11 11964575 11964708 -138818845 + L2 LINE L2 2801 2931 -383 183 355 16 16 chr11 11964860 11964922 -138818631 - L3 LINE CR1 -1304 273 212 330 153 0 0 chr11 11965436 11965495 -138818058 + CT-rich Low_complexity Low_complexity 4 62 0 1138 250 106 22 chr11 11966532 11966936 -138816617 - LTR16C LTR ERVL -1 490 53 289 234 26 13 chr11 11967031 11967108 -138816445 + L2 LINE L2 3203 3280 -33 226 322 66 66 chr11 11967123 11967306 -138816247 + L2 LINE L2 3004 3186 -86 554 252 155 7 chr11 11968079 11968234 -138815319 + MER5A DNA MER1_type 6 183 -6 356 284 155 21 chr11 11968318 11968557 -138814996 + L2 LINE L2 2843 3113 -159 401 270 97 65 chr11 11969234 11969419 -138814134 - MIR SINE MIR -21 241 51 2385 94 3 3 chr11 11969525 11969832 -138813721 + AluSp SINE Alu 1 307 -6 242 224 0 92 chr11 11970171 11970247 -138813306 + MIR SINE MIR 57 125 -83 1626 165 109 6 chr11 11970385 11970706 -138812847 - MER21B LTR ERV1 -107 756 403 302 193 18 0 chr11 11970718 11970775 -138812778 - MER21B LTR ERV1 -805 58 1 1330 117 5 15 chr11 11972431 11972636 -138810917 + L1PB1 LINE L1 5948 6150 -1 24 32 0 0 chr11 11972638 11972669 -138810884 + AT_rich Low_complexity Low_complexity 1 31 0 356 298 232 15 chr11 11973185 11973321 -138810232 + MIR SINE MIR 14 119 -143 1799 209 96 17 chr11 11973321 11973789 -138809764 - MLT1D LTR MaLR 0 505 1 356 298 232 15 chr11 11973789 11973850 -138809703 + MIR SINE MIR 119 254 -8 288 351 27 0 chr11 11974330 11974441 -138809112 - MIR SINE MIR -3 259 146 360 267 103 0 chr11 11974784 11974900 -138808653 + MIR SINE MIR 17 144 -64 889 220 42 35 chr11 11974910 11975169 -138808384 - MIR SINE MIR 0 262 2 1311 196 57 68 chr11 11975183 11975417 -138808136 + MSTD LTR MaLR 1 236 -160 261 0 0 0 chr11 11975417 11975446 -138808107 + (TC)n Simple_repeat Simple_repeat 2 30 0 270 0 0 0 chr11 11975447 11975477 -138808076 + (CA)n Simple_repeat Simple_repeat 2 31 0 1311 196 57 68 chr11 11975477 11975576 -138807977 + MSTD LTR MaLR 235 332 -64 333 373 19 28 chr11 11975676 11975888 -138807665 - L2 LINE L2 -198 3074 2865 632 324 105 30 chr11 11976947 11977308 -138806245 - L3 LINE CR1 -25 1552 1165 180 262 24 0 chr11 11979941 11979983 -138803570 - MIR SINE MIR 0 262 220 2080 117 13 10 chr11 11981849 11982148 -138801405 + AluSx SINE Alu 1 300 -12 445 265 29 18 chr11 11983953 11984123 -138799430 + LTR33 LTR ERVL 341 512 -9 1683 159 11 8 chr11 11984788 11985052 -138798501 + AluJo SINE Alu 1 265 -47 250 226 16 0 chr11 11985270 11985332 -138798221 - MER81 DNA DNA 0 114 52 895 253 60 65 chr11 11985423 11985869 -138797684 - LTR16A1 LTR ERVL -13 444 1 1301 246 72 3 chr11 11986604 11986938 -138796615 + LTR16C LTR ERVL 122 478 -13 1454 293 110 27 chr11 11987612 11988526 -138795027 + L2 LINE L2 2278 3282 -31 2240 213 72 40 chr11 11988526 11989127 -138794426 - MLT1E3 LTR MaLR 0 624 5 1454 293 110 27 chr11 11989127 11989162 -138794391 + L2 LINE L2 3282 3313 0 283 345 55 0 chr11 11989313 11989423 -138794130 + MIR SINE MIR 30 145 -63 189 121 0 0 chr11 11989490 11989523 -138794030 + (TCCA)n Simple_repeat Simple_repeat 3 35 0 610 258 67 53 chr11 11991500 11991709 -138791844 + MIR SINE MIR 3 214 -48 305 271 262 8 chr11 11992028 11992150 -138791403 + MIR SINE MIR 97 249 -13 427 312 58 98 chr11 11992232 11992527 -138791026 + L2 LINE L2 2990 3272 0 * 457 279 87 12 chr11 11992515 11992676 -138790877 + MIR3 SINE MIR 7 179 -29 2441 108 0 0 chr11 11993072 11993378 -138790175 + AluSx SINE Alu 1 306 -6 198 236 236 0 chr11 11993666 11993755 -138789798 + L2 LINE L2 3204 3313 0 323 268 106 78 chr11 11995572 11995714 -138787839 - MER91A DNA MER1_type -16 180 35 203 184 0 0 chr11 11996358 11996396 -138787157 + T-rich Low_complexity Low_complexity 1 38 0 194 143 20 0 chr11 11996854 11996903 -138786650 + (CA)n Simple_repeat Simple_repeat 1 50 0 283 307 37 31 chr11 11996910 11997136 -138786417 + (CATG)n Simple_repeat Simple_repeat 1 227 0 425 244 224 50 chr11 11997500 11997701 -138785852 + MIR SINE MIR 12 247 -15 411 268 23 90 chr11 11998093 11998265 -138785288 + MIR SINE MIR 7 165 -48 188 326 61 20 chr11 11998282 11998380 -138785173 - L2 LINE L2 0 3272 3171 227 240 52 31 chr11 11998756 11998852 -138784701 + MIR SINE MIR 34 131 -77 203 200 0 0 chr11 11999473 11999508 -138784045 - L2 LINE L2 -17 3255 3221 191 272 148 0 chr11 12000177 12000258 -138783295 - MER5A DNA MER1_type 0 189 97 * 274 253 40 0 chr11 12000190 12000265 -138783288 + MER5A DNA MER1_type 34 111 -78 * 1023 252 40 89 chr11 12000260 12000688 -138782865 - L2 LINE L2 0 3313 2907 24 32 0 0 chr11 12000695 12000726 -138782827 + AT_rich Low_complexity Low_complexity 1 31 0 839 136 0 0 chr11 12000726 12000844 -138782709 - FLAM_C SINE Alu -15 118 1 483 251 90 6 chr11 12001306 12001473 -138782080 - MIR SINE MIR -62 200 20 311 282 48 40 chr11 12002392 12002516 -138781037 - MER5B DNA MER1_type -51 127 3 466 214 13 82 chr11 12002557 12002716 -138780837 - MER112 DNA MER1_type -82 178 31 286 301 55 68 chr11 12003378 12003524 -138780029 - MIR SINE MIR -110 152 9 1800 167 33 3 chr11 12003620 12003919 -138779634 + AluJo SINE Alu 1 308 -4 198 349 0 16 chr11 12003920 12003983 -138779570 + MER5B DNA MER1_type 44 105 -73 930 241 76 17 chr11 12003993 12004284 -138779269 - L1MD2 LINE L1 0 6359 6052 192 306 108 45 chr11 12004365 12004633 -138778920 + L2 LINE L2 2386 2670 -644 441 127 25 0 chr11 12005670 12005749 -138777804 + L1MB7 LINE L1 6103 6183 -1 1775 168 35 0 chr11 12007977 12008263 -138775290 - AluJb SINE Alu -14 298 3 211 349 96 64 chr11 12008657 12008906 -138774647 + L2 LINE L2 3014 3270 -2 209 191 24 0 chr11 12009581 12009623 -138773930 + CT-rich Low_complexity Low_complexity 4 46 0 633 269 282 4 chr11 12010013 12010166 -138773387 - L2 LINE L2 0 3313 3204 2647 110 6 3 chr11 12010166 12010529 -138773024 - THE1B LTR MaLR 0 364 1 633 269 282 4 chr11 12010529 12010837 -138772716 - L2 LINE L2 -109 3204 2703 874 219 85 18 chr11 12011639 12011863 -138771690 - MIR SINE MIR -9 253 15 756 199 139 35 chr11 12011970 12012171 -138771382 - MER58A DNA MER1_type -2 222 1 196 324 130 28 chr11 12012181 12012289 -138771264 + MIR SINE MIR 20 138 -124 238 327 48 0 chr11 12012332 12012436 -138771117 - L2 LINE L2 -23 3249 3141 843 239 73 28 chr11 12013132 12013379 -138770174 + MIR SINE MIR 4 261 -1 523 322 29 37 chr11 12014148 12014393 -138769160 - MIR SINE MIR -1 261 19 231 262 79 56 chr11 12015385 12015511 -138768042 + MIR3 SINE MIR 5 133 -75 724 209 34 75 chr11 12016151 12016194 -138767359 - L2 LINE L2 -19 3294 3251 2432 91 50 19 chr11 12016194 12016558 -138766995 + THE1C LTR MaLR 1 375 0 724 209 34 75 chr11 12016558 12016753 -138766800 - L2 LINE L2 -62 3251 3066 490 297 34 0 chr11 12017618 12017736 -138765817 - L2 LINE L2 -3 3310 3189 * 562 230 38 61 chr11 12017726 12017928 -138765625 - MIR SINE MIR -44 218 23 408 156 0 21 chr11 12018912 12019008 -138764545 + L1MC4 LINE L1 7689 7782 -260 28 29 0 0 chr11 12019926 12019961 -138763592 + AT_rich Low_complexity Low_complexity 1 35 0 567 214 34 0 chr11 12019961 12020078 -138763475 + MER94 DNA DNA 14 134 0 410 162 40 50 chr11 12020100 12020199 -138763354 - MLT1A2 LTR MaLR -274 100 3 429 242 17 33 chr11 12020223 12020343 -138763210 + L2 LINE L2 3195 3312 -1 * 1076 285 71 18 chr11 12020339 12020792 -138762761 - L2 LINE L2 -576 2738 2262 690 336 8 8 chr11 12020875 12021128 -138762425 - MIR SINE MIR 0 262 10 212 278 167 0 chr11 12021195 12021267 -138762286 + MIR3 SINE MIR 112 195 -13 270 267 82 52 chr11 12024622 12024757 -138758796 - MLT1J2 LTR MaLR -90 360 222 915 266 136 57 chr11 12025895 12026579 -138756974 + L1ME3A LINE L1 5324 6066 -104 2520 88 0 0 chr11 12027111 12027419 -138756134 - AluSq SINE Alu -5 308 1 491 297 7 7 chr11 12027987 12028142 -138755411 - MER117 DNA MER1_type -42 155 1 333 271 0 12 chr11 12028300 12028385 -138755168 - MIR3 SINE MIR -7 201 118 463 291 233 18 chr11 12029189 12029532 -138754021 - L2 LINE L2 0 3313 2897 26 30 0 0 chr11 12030505 12030538 -138753015 + AT_rich Low_complexity Low_complexity 1 33 0 334 260 57 37 chr11 12030804 12030943 -138752610 - MIR SINE MIR -58 150 7 418 305 42 37 chr11 12031398 12031588 -138751965 - L2 LINE L2 -585 2729 2539 277 259 71 80 chr11 12032094 12032128 -138751425 + MIR SINE MIR 75 108 -154 2068 127 0 40 chr11 12032128 12032452 -138751101 - AluJb SINE Alu 0 312 2 277 259 71 80 chr11 12032452 12032529 -138751024 + MIR SINE MIR 108 185 -77 860 263 46 39 chr11 12032546 12032805 -138750748 - MIR SINE MIR 0 262 2 254 241 0 35 chr11 12032808 12032866 -138750687 + L2 LINE L2 3205 3260 -12 247 293 106 123 chr11 12033294 12033554 -138749999 - L2 LINE L2 0 3272 3020 917 124 0 0 chr11 12033554 12033675 -138749878 - FLAM_C SINE Alu -12 121 1 247 293 106 123 chr11 12033675 12033838 -138749715 - L2 LINE L2 -252 3020 2856 262 264 55 0 chr11 12034926 12035017 -138748536 + MIR3 SINE MIR 110 205 -3 927 300 171 19 chr11 12036447 12037246 -138746307 + L2 LINE L2 1829 2749 -565 2345 95 7 13 chr11 12037247 12037553 -138746000 + AluSx SINE Alu 1 304 -8 215 288 64 116 chr11 12037652 12037902 -138745651 + L2 LINE L2 2819 3055 -217 190 268 0 0 chr11 12037998 12038039 -138745514 + MER5B DNA MER1_type 1 41 -137 * 266 203 51 63 chr11 12038035 12038114 -138745439 - MER5B DNA MER1_type -64 114 37 230 336 78 78 chr11 12038129 12038257 -138745296 + L2 LINE L2 3145 3272 0 300 255 156 50 chr11 12038294 12038435 -138745118 + MER5A DNA MER1_type 2 157 -32 * 340 256 146 36 chr11 12038328 12038465 -138745088 - MER5B DNA MER1_type -24 154 3 236 298 92 50 chr11 12038654 12038795 -138744758 + L2 LINE L2 3124 3270 -2 408 239 84 52 chr11 12038907 12039062 -138744491 + MIR SINE MIR 102 261 -1 774 213 120 0 chr11 12039507 12039690 -138743863 - MLT1D LTR MaLR 0 505 301 7047 49 3 4 chr11 12139698 12141192 -138642361 - L1PA6 LINE L1 -166 5988 4495 230 352 111 28 chr11 12141208 12141316 -138642237 + L2 LINE L2 3145 3261 -11 344 167 14 14 chr11 12141869 12141941 -138641612 + MLT1C LTR MaLR 269 340 -127 29 28 0 0 chr11 12142065 12142101 -138641452 + AT_rich Low_complexity Low_complexity 1 36 0 2231 160 34 3 chr11 12142101 12142458 -138641095 + MLT1C LTR MaLR 100 467 0 849 270 38 5 chr11 12142747 12142958 -138640595 - MIR SINE MIR -14 248 31 193 324 169 7 chr11 12143073 12143209 -138640344 + L2 LINE L2 2232 2389 -925 1771 73 5 0 chr11 12143836 12144056 -138639497 - L1PA5 LINE L1 0 6154 5934 576 300 58 61 chr11 12144386 12144495 -138639058 + L2 LINE L2 2516 2624 -690 1005 216 0 0 chr11 12144495 12144662 -138638891 + FAM SINE Alu 1 167 -8 576 300 58 61 chr11 12144662 12144882 -138638671 + L2 LINE L2 2624 2844 -470 1659 173 3 18 chr11 12144894 12145178 -138638375 - AluJb SINE Alu -20 292 13 233 259 0 0 chr11 12145180 12145238 -138638315 + L2 LINE L2 2912 2969 -303 1466 195 62 0 chr11 12145303 12145575 -138637978 - AluJo SINE Alu -23 289 1 381 22 0 0 chr11 12145984 12146030 -138637523 + (CA)n Simple_repeat Simple_repeat 2 47 0 4291 191 43 69 chr11 12146974 12148522 -138635031 - L1MC4 LINE L1 -743 5403 4442 378 0 0 0 chr11 12148522 12148564 -138634989 + (TA)n Simple_repeat Simple_repeat 2 43 0 4291 191 43 69 chr11 12148564 12148667 -138634886 - L1MC4 LINE L1 -1704 4442 4338 637 231 14 0 chr11 12148662 12148809 -138634744 + L1MD3 LINE L1 7842 7990 -5 * 355 227 182 9 chr11 12149026 12149136 -138634417 + MIR SINE MIR 29 157 -105 581 277 36 36 chr11 12149265 12149431 -138634122 + MIR SINE MIR 13 178 -84 1911 124 10 27 chr11 12149489 12149787 -138633766 + AluSq SINE Alu 1 293 -20 1838 140 14 3 chr11 12149804 12150097 -138633456 + AluJb SINE Alu 4 299 -13 1017 78 35 0 chr11 12150139 12150280 -138633273 - AluSg/x SINE Alu -10 300 155 1465 50 0 28 chr11 12150380 12150561 -138632992 - AluY SINE Alu -135 176 1 5282 144 27 47 chr11 12150561 12151400 -138632153 - L1MA7 LINE L1 -136 6155 5314 1742 155 3 24 chr11 12151400 12151696 -138631857 + AluJo SINE Alu 1 290 -22 5282 144 27 47 chr11 12151696 12152010 -138631543 - L1MA7 LINE L1 -977 5314 4995 610 290 56 52 chr11 12152088 12152141 -138631412 - MIR SINE MIR -3 259 208 2394 87 7 0 chr11 12152141 12152439 -138631114 - AluY SINE Alu -11 300 1 610 290 56 52 chr11 12152439 12152637 -138630916 - MIR SINE MIR -54 208 7 488 48 71 36 chr11 12153950 12154034 -138629519 + L1MA4 LINE L1 6213 6299 -1 892 118 0 52 chr11 12154080 12154215 -138629338 + FLAM_C SINE Alu 1 128 -15 213 180 40 20 chr11 12154372 12154422 -138629131 + MIR3 SINE MIR 109 159 -49 443 191 0 75 chr11 12155059 12155153 -138628400 + MER21B LTR ERV1 1 87 -776 3458 197 78 30 chr11 12155177 12155949 -138627604 + MER21B LTR ERV1 19 827 -36 312 295 72 0 chr11 12156996 12157135 -138626418 - MIR SINE MIR -13 249 101 189 0 0 0 chr11 12159556 12159577 -138623976 + (CTG)n Simple_repeat Simple_repeat 3 23 0 188 295 16 16 chr11 12159640 12159701 -138623852 - L2 LINE L2 -4 3309 3249 317 288 24 0 chr11 12160230 12160355 -138623198 + L1MEc LINE L1 1545 1672 -4724 4891 221 78 41 chr11 12160361 12160616 -138622937 + L1M4 LINE L1 2901 3145 -3001 2791 52 41 9 chr11 12160616 12160959 -138622594 + L1PA7 LINE L1 5801 6154 0 4891 221 78 41 chr11 12160959 12161064 -138622489 + L1M4 LINE L1 3145 3245 -2901 1930 151 10 13 chr11 12161064 12161376 -138622177 + AluJb SINE Alu 1 311 -1 4891 221 78 41 chr11 12161376 12162941 -138620612 + L1M4 LINE L1 3245 4953 -1193 792 160 6 12 chr11 12162941 12163110 -138620443 + GA-rich Low_complexity Low_complexity 2 169 0 510 141 101 0 chr11 12163120 12163219 -138620334 + L1M4 LINE L1 4964 5072 -1074 561 254 6 48 chr11 12163274 12163439 -138620114 - MLT2F LTR ERVL -505 158 1 692 291 4 16 chr11 12163440 12163691 -138619862 + L1ME3A LINE L1 4932 5179 -967 1042 219 89 11 chr11 12163793 12164121 -138619432 + L1ME3A LINE L1 5258 5637 -533 1255 147 87 19 chr11 12164201 12164583 -138618970 - MLT2A2 LTR ERVL 0 453 146 390 58 0 0 chr11 12164577 12164629 -138618924 + MADE1 DNA Mariner 29 80 0 * 913 230 72 57 chr11 12164635 12164953 -138618600 + L1ME3A LINE L1 5840 6162 -8 230 203 31 0 chr11 12167698 12167762 -138615791 + MLT1H LTR MaLR 21 86 -463 1044 224 120 87 chr11 12167798 12168223 -138615330 - MER41B LTR ERV1 -35 600 162 1123 69 0 2 chr11 12170219 12170467 -138613086 + AluY SINE Alu 1 301 -10 263 286 133 0 chr11 12171824 12171929 -138611624 - MIR SINE MIR -65 197 79 757 296 98 24 chr11 12173286 12173891 -138609662 + L1MC4a LINE L1 5176 5849 -355 747 133 59 0 chr11 12173890 12174025 -138609528 + L1MD3 LINE L1 7729 7871 -124 * 265 231 0 0 chr11 12174027 12174079 -138609474 + LTR30 LTR ERV1 1 52 -670 1554 53 126 0 chr11 12174079 12174286 -138609267 + LTR12 LTR ERV1 53 285 -429 269 239 28 0 chr11 12174286 12174357 -138609196 + LTR30 LTR ERV1 552 624 -98 734 180 25 0 chr11 12174357 12174479 -138609074 + LTR12 LTR ERV1 359 483 -231 305 130 0 0 chr11 12174501 12174555 -138608998 + L1MD3 LINE L1 7942 7995 0 2399 103 0 0 chr11 12174816 12175128 -138608425 - AluSx SINE Alu 0 312 1 826 234 20 70 chr11 12175329 12175573 -138607980 - MIR SINE MIR -2 260 29 2453 82 3 0 chr11 12175926 12176231 -138607322 - AluSp SINE Alu -7 306 1 24 0 0 0 chr11 12176740 12176764 -138606789 + AT_rich Low_complexity Low_complexity 1 24 0 244 330 89 18 chr11 12176998 12177110 -138606443 - L2 LINE L2 -4 3268 3149 385 345 17 0 chr11 12177146 12177262 -138606291 - MER91A DNA MER1_type -77 119 2 22 35 0 0 chr11 12177868 12177897 -138605656 + AT_rich Low_complexity Low_complexity 1 29 0 698 230 35 74 chr11 12177908 12177978 -138605575 - Charlie7 DNA MER1_type -1920 692 621 1432 185 31 28 chr11 12177978 12178265 -138605288 + AluJo SINE Alu 1 288 -24 698 230 35 74 chr11 12178265 12178451 -138605102 - Charlie7 DNA MER1_type -1991 621 446 840 278 68 0 chr11 12178453 12178687 -138604866 + MIR SINE MIR 2 251 -11 2193 189 7 36 chr11 12178687 12179132 -138604421 - Tigger2a DNA MER2_type -1 433 2 344 231 16 58 chr11 12179166 12179287 -138604266 - Charlie7 DNA MER1_type -2170 442 327 288 263 53 21 chr11 12179381 12179476 -138604077 - Charlie7 DNA MER1_type -2428 184 87 222 233 0 0 chr11 12179479 12179539 -138604014 + (TA)n Simple_repeat Simple_repeat 1 60 0 2015 150 17 50 chr11 12179539 12179687 -138603866 - MER7A DNA MER2_type -2692 346 195 2585 94 20 8 chr11 12179687 12180038 -138603515 + THE1A LTR MaLR 1 355 0 12276 101 4 6 chr11 12180038 12181620 -138601933 + THE1A-int LTR MaLR 1 1578 -2 2627 98 8 14 chr11 12181622 12181979 -138601574 + THE1A LTR MaLR 1 355 0 2015 150 17 50 chr11 12181979 12182186 -138601367 - MER7A DNA MER2_type -2843 195 1 460 219 21 25 chr11 12182194 12182439 -138601114 + (TATG)n Simple_repeat Simple_repeat 1 244 0 346 255 0 59 chr11 12182440 12182542 -138601011 - Charlie7 DNA MER1_type -2512 100 5 198 315 27 27 chr11 12182806 12182879 -138600674 - L2 LINE L2 -4 3268 3196 23 54 0 0 chr11 12182963 12183000 -138600553 + AT_rich Low_complexity Low_complexity 1 37 0 429 20 0 0 chr11 12183110 12183160 -138600393 + (TG)n Simple_repeat Simple_repeat 2 51 0 1960 123 3 11 chr11 12183161 12183445 -138600108 - AluSx SINE Alu -30 282 1 324 266 48 48 chr11 12183537 12183661 -138599892 + L2 LINE L2 3189 3312 -1 415 301 74 40 chr11 12183709 12183802 -138599751 - MIR3 SINE MIR -8 200 112 1564 212 98 22 chr11 12183802 12184170 -138599383 + MSTD LTR MaLR 1 396 0 415 301 74 40 chr11 12184170 12184252 -138599301 - MIR3 SINE MIR -96 112 19 2180 90 11 0 chr11 12184681 12184959 -138598594 + AluSq SINE Alu 3 283 -30 1040 85 0 0 chr11 12184829 12184959 -138598594 + AluSp/q SINE Alu 154 309 0 235 0 0 0 chr11 12184959 12184985 -138598568 + (TAA)n Simple_repeat Simple_repeat 2 180 0 1545 205 7 3 chr11 12185006 12185304 -138598249 - L1MD3 LINE L1 -127 7868 7570 348 247 13 0 chr11 12185412 12185489 -138598064 - L2 LINE L2 -5 3308 3231 1148 334 87 23 chr11 12185493 12186277 -138597276 - L2 LINE L2 -245 3068 2236 760 250 102 12 chr11 12186493 12186867 -138596686 + Charlie7 DNA MER1_type 57 509 -2103 385 160 53 0 chr11 12186916 12186989 -138596564 + Charlie7 DNA MER1_type 1817 1893 -719 792 168 15 86 chr11 12186989 12187186 -138596367 - MER96B DNA MER1_type? 0 417 235 1774 179 145 81 chr11 12187190 12187860 -138595693 + Charlie7 DNA MER1_type 1898 2610 -2 192 125 0 0 chr11 12188882 12188914 -138594639 + (CGG)n Simple_repeat Simple_repeat 2 33 0 180 0 0 0 chr11 12189745 12189765 -138593788 + (T)n Simple_repeat Simple_repeat 1 20 0 598 292 23 12 chr11 12191302 12191473 -138592080 - MIR3 SINE MIR -6 202 30 1083 189 137 8 chr11 12191822 12192070 -138591483 + MER58 DNA MER1_type 1 280 -2140 186 340 0 0 chr11 12192525 12192575 -138590978 + L2 LINE L2 3213 3262 -10 276 325 207 32 chr11 12192583 12192989 -138590564 - L3 LINE CR1 -18 1559 1083 412 219 52 10 chr11 12193499 12193595 -138589958 - MIR SINE MIR 0 262 163 512 315 158 20 chr11 12194219 12194711 -138588842 + L2 LINE L2 2148 2707 -607 518 216 74 27 chr11 12194796 12194944 -138588609 - MIR SINE MIR -30 232 78 567 192 110 107 chr11 12195017 12195088 -138588465 - HAL1 LINE L1 0 2507 2438 1766 157 109 3 chr11 12195088 12195401 -138588152 - MER7A DNA MER2_type -1 345 2 567 192 110 107 chr11 12195401 12195512 -138588041 - HAL1 LINE L1 -69 2438 2329 2398 77 0 7 chr11 12195512 12195811 -138587742 - AluSc SINE Alu -12 297 1 567 192 110 107 chr11 12195811 12195955 -138587598 - HAL1 LINE L1 -178 2329 2179 832 179 0 8 chr11 12195981 12196104 -138587449 - FLAM_C SINE Alu -20 123 2 1741 250 103 29 chr11 12196163 12196225 -138587328 - HAL1 LINE L1 -456 2051 1995 928 182 101 57 chr11 12196225 12196434 -138587119 + MER20 DNA MER1_type 2 219 0 1741 250 103 29 chr11 12196434 12197131 -138586422 - HAL1 LINE L1 -512 1995 1236 196 319 62 0 chr11 12197309 12197422 -138586131 + L2 LINE L2 2519 2638 -676 * 462 219 38 9 chr11 12197421 12197526 -138586027 - L2 LINE L2 -2 3311 3204 246 340 46 26 chr11 12197568 12197762 -138585791 + L2 LINE L2 2662 2859 -455 414 348 63 63 chr11 12198349 12198743 -138584810 + L2 LINE L2 2870 3263 -9 643 268 168 24 chr11 12198763 12199103 -138584450 + L2 LINE L2 2908 3296 -17 426 85 0 0 chr11 12199110 12199169 -138584384 + (GGGA)n Simple_repeat Simple_repeat 4 62 0 596 278 17 6 chr11 12199686 12199862 -138583691 - MER5B DNA MER1_type 0 178 1 327 384 141 0 chr11 12200431 12200728 -138582825 - L2 LINE L2 -2 3270 2932 723 243 53 70 chr11 12200829 12201072 -138582481 - MIR SINE MIR -4 258 20 2278 106 10 10 chr11 12201078 12201389 -138582164 - AluSx SINE Alu 0 312 2 208 351 236 3 chr11 12201560 12201853 -138581700 - L2 LINE L2 -670 2644 2284 947 128 54 0 chr11 12203002 12203151 -138580402 - AluSg/x SINE Alu -4 306 150 293 324 120 21 chr11 12203302 12203444 -138580109 + L2 LINE L2 3111 3266 -6 344 338 47 27 chr11 12203737 12203885 -138579668 - MIR SINE MIR -76 186 36 363 327 111 35 chr11 12204782 12204981 -138578572 + MIR SINE MIR 49 262 0 329 0 0 24 chr11 12205026 12205068 -138578485 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 20119 39 1 0 chr11 12205068 12208134 -138575419 - L1PA4 LINE L1 -11 6144 3071 2193 91 30 7 chr11 12208449 12208745 -138574808 - AluSx SINE Alu -9 303 1 470 283 43 8 chr11 12209258 12209410 -138574143 - MIR SINE MIR -67 141 36 596 267 27 14 chr11 12209606 12209752 -138573801 - MIR SINE MIR -34 228 81 868 245 65 86 chr11 12209775 12210158 -138573395 + MLT1I LTR MaLR 35 409 0 290 348 0 0 chr11 12210158 12210247 -138573306 - MIR SINE MIR -169 93 5 25 0 0 0 chr11 12210358 12210383 -138573170 + AT_rich Low_complexity Low_complexity 1 25 0 26 30 0 0 chr11 12210700 12210733 -138572820 + AT_rich Low_complexity Low_complexity 1 33 0 1426 204 50 66 chr11 12211286 12211682 -138571871 - MLT1B LTR MaLR 0 390 1 1967 144 0 22 chr11 12212051 12212363 -138571190 - AluSx SINE Alu -7 305 1 2049 94 7 21 chr11 12213343 12213656 -138569897 - AluSx SINE Alu 0 309 1 1507 207 78 21 chr11 12213942 12214314 -138569239 - L1ME1 LINE L1 -8 6158 5766 2415 48 21 0 chr11 12214330 12214619 -138568934 - AluY SINE Alu -16 295 1 243 265 294 0 chr11 12214635 12214737 -138568816 + MIR SINE MIR 104 235 -27 216 0 0 0 chr11 12216205 12216229 -138567324 + (TTTTTG)n Simple_repeat Simple_repeat 1 24 0 3343 22 16 0 chr11 12216229 12216600 -138566953 - L1PA2 LINE L1 0 6155 5779 25 0 0 0 chr11 12216683 12216708 -138566845 + AT_rich Low_complexity Low_complexity 1 25 0 216 0 0 0 chr11 12216779 12216803 -138566750 + (CAA)n Simple_repeat Simple_repeat 3 26 0 821 339 93 13 chr11 12216887 12217347 -138566206 + L3 LINE CR1 1056 1552 -25 346 187 68 13 chr11 12218518 12218626 -138564927 + FRAM/FAM SINE Alu 11 73 -102 884 199 18 58 chr11 12220805 12221031 -138562522 - L1MA10 LINE L1 0 6334 6118 1194 136 57 0 chr11 12221041 12221337 -138562216 - L1P LINE L1 -730 5426 5106 3438 190 3 0 chr11 12221426 12222088 -138561465 - L1 LINE L1 -919 5227 4564 3598 108 124 47 chr11 12222098 12222776 -138560777 + L1PB4 LINE L1 5427 6156 0 1913 198 44 5 chr11 12222775 12223159 -138560394 - L1MA9 LINE L1 -188 6124 5726 * 1988 146 10 0 chr11 12223283 12223577 -138559976 + AluSx SINE Alu 1 297 -15 2064 111 7 30 chr11 12223711 12224008 -138559545 + AluSc SINE Alu 1 290 -19 221 106 0 85 chr11 12224093 12224140 -138559413 - L2 LINE L2 0 3313 3271 183 102 0 184 chr11 12224113 12224162 -138559391 - MIR SINE MIR -10 252 213 * 220 335 100 39 chr11 12224778 12225088 -138558465 + L2 LINE L2 858 1186 -2128 2293 285 191 13 chr11 12225236 12226453 -138557100 + L2 LINE L2 1808 3255 -58 447 257 142 0 chr11 12226635 12226783 -138556770 + L2 LINE L2 2587 2755 -559 754 183 14 0 chr11 12226951 12227093 -138556460 + L1MA8 LINE L1 6145 6288 -3 187 256 0 0 chr11 12229145 12229184 -138554369 + L2 LINE L2 3226 3264 -8 307 204 45 57 chr11 12230548 12230636 -138552917 - LTR33A LTR ERVL 0 523 437 241 280 140 64 chr11 12230763 12230920 -138552633 - MLT2E LTR ERVL -420 208 40 654 236 13 25 chr11 12231158 12231315 -138552238 - L2 LINE L2 0 3313 3159 1266 196 19 11 chr11 12231328 12231594 -138551959 - L1MB8 LINE L1 0 6178 5911 415 305 47 0 chr11 12232250 12232378 -138551175 + MIR SINE MIR 113 246 -16 738 214 107 28 chr11 12233394 12233609 -138549944 + MIR SINE MIR 18 249 -13 458 319 27 21 chr11 12233691 12233878 -138549675 + MIR SINE MIR 30 216 -46 461 249 112 6 chr11 12234226 12234395 -138549158 + MIR SINE MIR 73 259 -3 329 282 194 70 chr11 12234710 12235096 -138548457 - L2 LINE L2 -22 3250 2817 190 324 40 40 chr11 12235213 12235361 -138548192 - L2 LINE L2 -840 2474 2327 210 405 32 14 chr11 12237218 12237438 -138546115 - L2 LINE L2 -208 3064 2841 331 395 34 8 chr11 12237756 12237875 -138545678 + L2 LINE L2 3111 3232 -40 2094 118 3 23 chr11 12238703 12239008 -138544545 + AluSx SINE Alu 1 299 -13 885 253 54 8 chr11 12239364 12239605 -138543948 - MIR SINE MIR -10 252 1 2040 149 12 18 chr11 12239623 12239958 -138543595 + L1MB5 LINE L1 5842 6174 0 564 260 38 53 chr11 12241806 12242166 -138541387 - L1MC4a LINE L1 -85 6036 5684 188 245 20 0 chr11 12243546 12243595 -138539958 - L2 LINE L2 0 3313 3264 598 255 139 23 chr11 12243795 12244011 -138539542 - MIR SINE MIR 0 262 22 2385 81 0 19 chr11 12244011 12244319 -138539234 - AluSc SINE Alu -7 302 1 745 224 51 41 chr11 12244727 12244923 -138538630 + MIR SINE MIR 20 217 -45 366 127 18 0 chr11 12245099 12245154 -138538399 - MLT1B LTR MaLR 0 467 412 2090 110 3 32 chr11 12245192 12245222 -138538331 + MER1A DNA MER1_type 230 259 -2443 2177 115 0 3 chr11 12245222 12245517 -138538036 + AluSc SINE Alu 1 294 -15 2090 110 3 32 chr11 12245517 12245795 -138537758 + MER1A DNA MER1_type 259 529 0 1594 164 16 85 chr11 12245795 12246164 -138537389 - MLT1B LTR MaLR -47 343 1 332 309 36 27 chr11 12246264 12246374 -138537179 - MIR SINE MIR -131 131 21 402 272 24 0 chr11 12246492 12246617 -138536936 - MIR3 SINE MIR -4 204 77 433 311 40 6 chr11 12247294 12247471 -138536082 + MIR SINE MIR 62 244 -18 22 0 0 0 chr11 12247472 12247494 -138536059 + AT_rich Low_complexity Low_complexity 1 22 0 684 246 66 66 chr11 12247929 12248185 -138535368 + Charlie8 DNA MER1_type 31 286 -2131 181 246 0 66 chr11 12248354 12248415 -138535138 - MIR SINE MIR -2 260 204 1863 138 0 0 chr11 12248719 12248988 -138534565 + AluJb SINE Alu 26 294 -18 1038 295 107 44 chr11 12249511 12251183 -138532370 - L1P4 LINE L1 -529 5636 3838 1800 158 11 0 chr11 12251183 12251488 -138532065 + AluSx SINE Alu 1 308 0 1038 295 107 44 chr11 12251488 12251613 -138531940 - L1P4 LINE L1 -2327 3838 3722 198 0 0 0 chr11 12253334 12253356 -138530197 + (TTAAA)n Simple_repeat Simple_repeat 3 24 0 21 0 0 0 chr11 12253636 12253657 -138529896 + AT_rich Low_complexity Low_complexity 1 21 0 1158 273 129 19 chr11 12253840 12254368 -138529185 - L1ME3A LINE L1 -202 5968 5383 239 312 81 43 chr11 12254534 12254720 -138528833 + L2 LINE L2 2687 2879 -435 21 36 0 0 chr11 12255434 12255462 -138528091 + AT_rich Low_complexity Low_complexity 1 28 0 393 180 19 50 chr11 12255471 12255592 -138527961 - MIR SINE MIR -93 115 25 358 156 78 0 chr11 12256742 12256806 -138526747 + MER3 DNA MER1_type 40 108 -101 1873 121 71 4 chr11 12257035 12257316 -138526237 - L1MB7 LINE L1 -2 6182 5883 393 347 41 0 chr11 12257432 12257580 -138525973 - MIR SINE MIR -65 143 38 583 333 51 81 chr11 12258638 12259107 -138524446 + L2 LINE L2 2817 3271 -1 620 317 75 33 chr11 12259565 12260016 -138523537 + MLT1L LTR MaLR 142 611 -4 252 59 0 0 chr11 12260548 12260582 -138522971 + (TTA)n Simple_repeat Simple_repeat 1 34 0 243 255 96 0 chr11 12260595 12260689 -138522864 - L1ME3 LINE L1 -20 6142 6040 848 240 47 108 chr11 12260934 12261296 -138522257 + MER102b DNA MER1_type 2 341 0 258 321 252 0 chr11 12261453 12261584 -138521969 + MIR SINE MIR 86 249 -13 646 318 37 30 chr11 12262148 12262444 -138521109 + L2 LINE L2 2644 2941 -373 345 361 28 14 chr11 12262723 12262867 -138520686 + L2 LINE L2 3127 3272 0 195 302 0 19 chr11 12264239 12264292 -138519261 + MIR SINE MIR 35 86 -176 575 315 34 17 chr11 12264700 12264938 -138518615 + L2 LINE L2 2508 2749 -565 508 196 10 20 chr11 12265025 12265127 -138518426 - L2 LINE L2 0 3313 3213 1670 183 75 51 chr11 12267271 12267327 -138516226 - MLT2B1 LTR ERVL 0 414 361 477 0 0 0 chr11 12267327 12267380 -138516173 + (CA)n Simple_repeat Simple_repeat 2 54 0 1670 183 75 51 chr11 12267380 12267759 -138515794 - MLT2B1 LTR ERVL -53 361 3 561 217 78 0 chr11 12268513 12268642 -138514911 - L2 LINE L2 0 3313 3175 276 272 12 12 chr11 12268790 12268871 -138514682 - MLT1K LTR MaLR 0 588 508 232 210 48 16 chr11 12269131 12269193 -138514360 - MLT1K LTR MaLR -343 245 182 272 193 24 60 chr11 12269443 12269526 -138514027 + MIR SINE MIR 183 262 0 24 32 0 0 chr11 12270042 12270073 -138513480 + AT_rich Low_complexity Low_complexity 1 31 0 747 181 222 6 chr11 12270337 12270508 -138513045 + MER3 DNA MER1_type 1 208 -1 244 284 202 0 chr11 12270648 12270757 -138512796 - L2 LINE L2 -1 3271 3141 380 364 12 24 chr11 12271204 12271369 -138512184 - L2 LINE L2 -528 2786 2624 2382 94 0 0 chr11 12271692 12271990 -138511563 - AluY SINE Alu -13 298 1 376 368 118 0 chr11 12272361 12272565 -138510988 + L3 LINE CR1 1302 1529 -48 302 208 0 0 chr11 12272844 12272897 -138510656 + MER20 DNA MER1_type 167 219 0 265 310 155 8 chr11 12273677 12273806 -138509747 + MIR SINE MIR 22 169 -93 186 286 24 0 chr11 12273816 12273858 -138509695 + L2 LINE L2 3259 3301 -12 855 201 84 80 chr11 12273874 12274226 -138509327 - L1MA9 LINE L1 -25 6275 5928 811 203 7 0 chr11 12274598 12274751 -138508802 - FRAM SINE Alu -14 162 9 2411 66 3 13 chr11 12274768 12275071 -138508482 - AluY SINE Alu -11 300 1 1768 156 25 3 chr11 12276270 12276552 -138507001 + AluJb SINE Alu 1 288 -24 1714 201 27 70 chr11 12276637 12277051 -138506502 + MSTD LTR MaLR 1 396 0 2115 133 0 0 chr11 12277084 12277378 -138506175 + AluSx SINE Alu 1 294 -18 239 146 0 0 chr11 12277390 12277431 -138506122 + L1MC4 LINE L1 6663 6703 -1339 200 132 94 19 chr11 12277431 12277452 -138506101 + (CATA)n Simple_repeat Simple_repeat 4 22 -38 2458 190 68 6 chr11 12277452 12277925 -138505628 + MLT1D LTR MaLR 3 504 -1 200 132 94 19 chr11 12277925 12277956 -138505597 + (CATA)n Simple_repeat Simple_repeat 22 60 0 918 161 57 16 chr11 12278060 12278252 -138505301 + MIR SINE MIR 41 240 -22 357 252 173 22 chr11 12278244 12278383 -138505170 - MIR SINE MIR -100 162 3 * 37 23 0 0 chr11 12278521 12278565 -138504988 + AT_rich Low_complexity Low_complexity 1 44 0 852 292 67 29 chr11 12278747 12279439 -138504114 - L1MC4a LINE L1 -367 5795 5273 989 209 0 31 chr11 12279528 12279724 -138503829 + MER58A DNA MER1_type 27 216 -8 464 281 41 51 chr11 12279728 12279924 -138503629 - L1M4 LINE L1 -330 5791 5598 688 328 42 4 chr11 12280007 12280245 -138503308 - MIR SINE MIR -15 247 1 248 231 0 0 chr11 12280570 12280622 -138502931 + MIR SINE MIR 80 131 -131 24428 65 2 1 chr11 12280963 12284019 -138499534 + L1P LINE L1 11 3069 -3077 214 247 27 0 chr11 12384196 12384269 -138399284 + G-rich Low_complexity Low_complexity 3 77 0 21 71 0 0 chr11 12384308 12384350 -138399203 + GC_rich Low_complexity Low_complexity 1 42 0 191 59 0 59 chr11 12384910 12384944 -138398609 + (CGGGG)n Simple_repeat Simple_repeat 3 34 0 374 210 25 0 chr11 12385853 12385934 -138397619 + MIR SINE MIR 47 129 -133 728 258 48 48 chr11 12388789 12389018 -138394535 - MIR SINE MIR -26 236 8 208 427 68 0 chr11 12389299 12389416 -138394137 - MER5B DNA MER1_type -26 152 28 26 0 0 0 chr11 12389803 12389829 -138393724 + AT_rich Low_complexity Low_complexity 1 26 0 855 292 101 11 chr11 12390336 12390703 -138392850 - LTR16C LTR ERVL -16 475 76 695 285 47 42 chr11 12390782 12390996 -138392557 + MIR SINE MIR 35 249 -13 340 320 103 13 chr11 12392458 12392614 -138390939 + MIR SINE MIR 38 207 -55 2072 115 16 45 chr11 12392739 12393051 -138390502 + AluSx SINE Alu 1 303 -9 2275 83 0 7 chr11 12393051 12393378 -138390175 + AluSx SINE Alu 1 325 0 265 314 122 58 chr11 12393713 12393869 -138389684 - MIR3 SINE MIR -7 201 36 1441 122 19 14 chr11 12393881 12394119 -138389434 - AluSg/x SINE Alu 0 310 87 362 316 8 8 chr11 12394464 12394581 -138388972 - MIR SINE MIR -3 259 143 200 286 0 0 chr11 12396741 12396790 -138386763 - MER91A DNA MER1_type -147 49 1 1783 152 17 26 chr11 12398169 12398471 -138385082 + AluJo SINE Alu 1 299 -13 283 301 211 0 chr11 12399160 12399293 -138384260 + MIR SINE MIR 47 207 -55 300 282 160 32 chr11 12400043 12400199 -138383354 + L1MC4a LINE L1 5735 5910 -1898 533 288 87 6 chr11 12400397 12400660 -138382893 - L1MC/D LINE L1 -480 5641 5401 618 134 31 0 chr11 12400681 12400778 -138382775 - MSTB1 LTR MaLR -13 419 320 782 263 39 22 chr11 12401159 12401391 -138382162 + MIR SINE MIR 14 249 -13 314 175 53 0 chr11 12401679 12401736 -138381817 + LTR40a LTR ERVL 3 62 -457 896 196 91 5 chr11 12401736 12401945 -138381608 - MSTB1 LTR MaLR -2 430 204 913 170 0 0 chr11 12401975 12402116 -138381437 - FLAM_C SINE Alu -2 141 1 856 183 118 0 chr11 12402116 12402285 -138381268 - MSTB1 LTR MaLR -236 190 2 1599 218 27 9 chr11 12402288 12402676 -138380877 + LTR40a LTR ERVL 58 519 0 238 274 53 101 chr11 12402676 12402955 -138380598 - L2 LINE L2 -227 3045 2759 417 323 87 0 chr11 12403572 12403733 -138379820 - MIR SINE MIR -35 227 53 2996 158 32 62 chr11 12403812 12404471 -138379082 - L1MB2 LINE L1 -7 6164 5526 386 258 33 26 chr11 12405899 12406050 -138377503 - MER117 DNA MER1_type -3 194 43 229 333 53 0 chr11 12406088 12406163 -138377390 - MIR3 SINE MIR -49 159 81 214 288 81 54 chr11 12406399 12406510 -138377043 + L2 LINE L2 3199 3312 -1 494 278 123 11 chr11 12406654 12406841 -138376712 - MIR SINE MIR -7 255 48 392 284 105 70 chr11 12407747 12407976 -138375577 - MIR SINE MIR -6 256 20 415 324 76 16 chr11 12408026 12408211 -138375342 - MIR SINE MIR -7 255 60 208 254 0 0 chr11 12408842 12408897 -138374656 + T-rich Low_complexity Low_complexity 1 55 0 1368 257 66 0 chr11 12409021 12409445 -138374108 + Charlie4a DNA MER1_type 56 507 -1 816 232 49 40 chr11 12413776 12414000 -138369553 + MIR SINE MIR 36 261 -1 801 148 0 37 chr11 12414075 12414210 -138369343 + FLAM_C SINE Alu 3 132 -1 799 110 0 15 chr11 12414229 12414365 -138369188 + (GAA)n Simple_repeat Simple_repeat 2 135 0 658 210 114 0 chr11 12414639 12414806 -138368747 - MER53 DNA DNA 0 189 4 374 173 102 87 chr11 12416173 12416300 -138367253 + MIR SINE MIR 18 146 -62 483 255 180 6 chr11 12416729 12416890 -138366663 - MIR SINE MIR -48 214 26 863 159 26 7 chr11 12417575 12417726 -138365827 - MLT1C LTR MaLR 0 467 314 1044 165 16 31 chr11 12417823 12418017 -138365536 - AluSg/x SINE Alu -4 308 118 1650 185 87 6 chr11 12418069 12418415 -138365138 + MSTD LTR MaLR 21 394 -2 300 202 83 36 chr11 12419465 12419549 -138364004 + MIR SINE MIR 62 149 -113 271 246 0 0 chr11 12420601 12420658 -138362895 - MIR SINE MIR -150 112 56 298 234 0 0 chr11 12421264 12421328 -138362225 - L2 LINE L2 -1 3312 3249 383 284 87 83 chr11 12421455 12421787 -138361766 - L1ME LINE L1 -297 5824 5488 1622 202 91 60 chr11 12421787 12422273 -138361280 - MLT1D LTR MaLR -2 503 3 383 284 87 83 chr11 12422273 12422444 -138361109 - L1ME LINE L1 -633 5488 5319 234 371 43 9 chr11 12422467 12422583 -138360970 + L2 LINE L2 3137 3256 -16 227 248 168 56 chr11 12422798 12422923 -138360630 + MIR SINE MIR 90 228 -34 493 145 12 12 chr11 12424636 12424719 -138358834 + AluJ/FLAM SINE Alu 2 84 -228 202 277 88 25 chr11 12426463 12426622 -138356931 + L2 LINE L2 2921 3089 -183 291 310 128 38 chr11 12427014 12427327 -138356226 - L2 LINE L2 -927 2387 2047 849 128 0 0 chr11 12427501 12427618 -138355935 + FLAM_C SINE Alu 7 123 -20 295 314 112 18 chr11 12428825 12429048 -138354505 - MIR SINE MIR -15 247 4 376 331 100 0 chr11 12429985 12430115 -138353438 - MIR SINE MIR -16 246 104 445 319 115 42 chr11 12430243 12430651 -138352902 - L2 LINE L2 -6 3266 2829 1057 191 71 42 chr11 12431184 12431493 -138352060 - MLT1D LTR MaLR -131 374 57 520 160 47 9 chr11 12431484 12431590 -138351963 - MLT1D LTR MaLR -361 144 35 * 388 275 106 21 chr11 12436974 12437116 -138346437 - MIR SINE MIR 0 262 109 1499 156 44 16 chr11 12437171 12437486 -138346067 + MER33 DNA MER1_type 1 324 0 319 197 142 63 chr11 12437942 12438069 -138345484 - HAL1b LINE L1 -19 1329 1193 233 160 20 20 chr11 12438194 12438244 -138345309 - L1MC/D LINE L1 -2048 5760 5711 317 82 41 0 chr11 12438268 12438317 -138345236 + AluY SINE Alu 85 135 -166 231 326 87 23 chr11 12438460 12438632 -138344921 - L1MC/D LINE L1 -529 5592 5410 385 279 101 73 chr11 12438659 12439085 -138344468 - L1MC/D LINE L1 -824 5322 4885 30 0 0 0 chr11 12439421 12439451 -138344102 + AT_rich Low_complexity Low_complexity 1 30 0 226 303 151 0 chr11 12440206 12440325 -138343228 + L2 LINE L2 3128 3264 -8 2033 158 74 12 chr11 12440973 12441377 -138342176 + MLT1C LTR MaLR 1 429 -38 859 43 29 22 chr11 12442977 12443115 -138340438 + (GAAA)n Simple_repeat Simple_repeat 1 139 0 431 311 64 38 chr11 12443658 12443983 -138339570 + L1ME2 LINE L1 5621 5953 -246 3205 164 36 93 chr11 12444456 12445292 -138338261 + L1PA16 LINE L1 4710 5593 -573 2500 112 16 19 chr11 12445292 12445668 -138337885 + THE1C LTR MaLR 1 375 0 9736 112 40 52 chr11 12445668 12447267 -138336286 + THE1B-int LTR MaLR 1 1580 0 2790 97 0 0 chr11 12447267 12447628 -138335925 + THE1B LTR MaLR 1 361 -3 3205 164 36 93 chr11 12447628 12448276 -138335277 + L1PA16 LINE L1 5590 6107 -59 186 71 0 0 chr11 12448285 12448313 -138335240 + (TAA)n Simple_repeat Simple_repeat 3 30 0 351 282 0 51 chr11 12450106 12450223 -138333330 - MER5B DNA MER1_type -1 177 67 1357 223 64 9 chr11 12450737 12451082 -138332471 + L1ME1 LINE L1 5803 6166 0 187 378 25 17 chr11 12451262 12451381 -138332172 + MIR SINE MIR 16 135 -73 549 294 23 14 chr11 12451472 12451686 -138331867 + MIR SINE MIR 47 262 0 396 250 214 14 chr11 12452385 12452525 -138331028 - MER5A DNA MER1_type -9 180 13 1618 116 102 69 chr11 12452962 12453286 -138330267 + THE1C LTR MaLR 1 340 -35 2200 93 41 0 chr11 12453286 12453577 -138329976 - AluY SINE Alu -7 304 2 1618 116 102 69 chr11 12453577 12453615 -138329938 + THE1C LTR MaLR 340 375 0 517 306 88 10 chr11 12453837 12454131 -138329422 - L2 LINE L2 0 3313 2997 1897 122 16 7 chr11 12454150 12454441 -138329112 + L1MB5 LINE L1 5254 5550 -624 2541 113 13 5 chr11 12454441 12454813 -138328740 + THE1C LTR MaLR 1 375 0 9604 130 37 40 chr11 12454813 12456393 -138327160 + THE1C-int LTR MaLR 1 1575 -5 2290 150 16 11 chr11 12456396 12456769 -138326784 + THE1C LTR MaLR 1 375 0 2886 179 69 14 chr11 12456770 12457362 -138326191 + L1MB5 LINE L1 5542 6166 -8 21 0 0 0 chr11 12457559 12457580 -138325973 + AT_rich Low_complexity Low_complexity 1 21 0 309 332 83 5 chr11 12457589 12457794 -138325759 + MIR SINE MIR 30 250 -12 3065 223 55 64 chr11 12457816 12458618 -138324935 - MER21B LTR ERV1 -60 803 9 3083 121 47 25 chr11 12458783 12459269 -138324284 - LOR1a LTR ERV1 0 497 1 3479 174 20 0 chr11 12459675 12460268 -138323285 - LTR31 LTR ERV1 0 619 15 1242 238 20 16 chr11 12461068 12461371 -138322182 + MER31B LTR ERV1 1 304 -162 2553 123 65 5 chr11 12461372 12461787 -138321766 + MER83 LTR ERV1 1 440 -8 923 195 11 16 chr11 12461788 12461978 -138321575 + MER31A LTR ERV1 297 485 0 2489 115 69 20 chr11 12462882 12463290 -138320263 + MSTA LTR MaLR 1 428 0 189 0 0 0 chr11 12463354 12463375 -138320178 + (TG)n Simple_repeat Simple_repeat 2 22 0 195 371 41 0 chr11 12463468 12463565 -138319988 - MER5B DNA MER1_type 0 178 78 1188 164 93 22 chr11 12464891 12465160 -138318393 - MER33 DNA MER1_type -36 288 1 255 294 37 0 chr11 12465230 12465339 -138318214 + L1ME LINE L1 5593 5705 -2103 383 314 114 11 chr11 12465349 12465524 -138318029 + MIR SINE MIR 20 212 -50 228 268 0 0 chr11 12465580 12465636 -138317917 + L1ME LINE L1 5736 5791 -330 218 340 87 0 chr11 12465641 12465744 -138317809 + L2 LINE L2 3199 3310 -3 12809 216 36 14 chr11 12465798 12469482 -138314071 + L1PA13 LINE L1 1085 4841 -1956 1216 214 33 17 chr11 12469457 12469756 -138313797 + L1PA15 LINE L1 3891 4194 -2603 * 6325 101 11 12 chr11 12469763 12471741 -138311812 + L1PA15 LINE L1 4830 6808 -8 473 179 28 28 chr11 12471749 12471855 -138311698 + L1M3 LINE L1 5406 5511 -660 2209 137 27 36 chr11 12471858 12472223 -138311330 - THE1B LTR MaLR -2 362 1 11254 98 13 12 chr11 12472226 12473253 -138310300 - THE1B-int LTR MaLR -28 1552 521 2035 135 37 0 chr11 12473253 12473550 -138310003 + AluSg SINE Alu 1 308 -2 11254 98 13 12 chr11 12473550 12474066 -138309487 - THE1B-int LTR MaLR -1059 521 7 2092 148 36 41 chr11 12474077 12474441 -138309112 - THE1B LTR MaLR 0 364 3 537 190 0 0 chr11 12474443 12474543 -138309010 + L1M3 LINE L1 5507 5606 -565 182 320 20 46 chr11 12475602 12475755 -138307798 + MIR SINE MIR 68 216 -46 361 244 13 0 chr11 12475924 12476002 -138307551 + MIR3 SINE MIR 83 161 -47 450 104 0 0 chr11 12476157 12476224 -138307329 - MER41B LTR ERV1 -86 549 483 1692 192 7 7 chr11 12477379 12477681 -138305872 + AluJo SINE Alu 1 302 -10 2066 141 6 13 chr11 12477681 12477994 -138305559 + AluJo SINE Alu 1 311 -1 888 128 32 166 chr11 12477999 12478272 -138305281 - MER33 DNA MER1_type -89 274 1 692 159 7 0 chr11 12478294 12478432 -138305121 + (CA)n Simple_repeat Simple_repeat 1 139 0 1769 139 157 16 chr11 12478488 12478863 -138304690 + MSTA LTR MaLR 1 428 0 200 306 81 18 chr11 12478866 12478977 -138304576 - L2 LINE L2 -190 3082 2965 382 289 0 0 chr11 12479038 12479121 -138304432 + MER58 DNA MER1_type 4 86 -255 620 202 0 0 chr11 12479121 12479235 -138304318 - AluJb SINE Alu -22 290 177 922 152 64 59 chr11 12480235 12480313 -138303240 - MER3 DNA MER1_type -2 207 131 1744 163 27 7 chr11 12480313 12480614 -138302939 + AluJb SINE Alu 5 311 -1 922 152 64 59 chr11 12480614 12480739 -138302814 - MER3 DNA MER1_type -78 131 3 427 260 10 0 chr11 12480912 12481016 -138302537 - MER8 DNA MER2_type -134 105 1 395 280 73 13 chr11 12481017 12481167 -138302386 + MIR SINE MIR 76 234 -28 2234 85 48 3 chr11 12482138 12482433 -138301120 + AluSg SINE Alu 1 308 -2 263 279 0 13 chr11 12482506 12482585 -138300968 + (CA)n Simple_repeat Simple_repeat 1 78 0 880 209 51 5 chr11 12483756 12483970 -138299583 + MIR SINE MIR 40 261 -1 1557 166 53 28 chr11 12483983 12484267 -138299286 - AluJo SINE Alu -21 291 1 500 219 27 20 chr11 12484309 12484394 -138299159 - L2 LINE L2 -4 3309 3221 2022 178 53 59 chr11 12484394 12484901 -138298652 + MLT1D LTR MaLR 1 504 -1 500 219 27 20 chr11 12484901 12484961 -138298592 - L2 LINE L2 -92 3221 3163 296 222 0 0 chr11 12486092 12486146 -138297407 + MER91 DNA MER1_type 127 180 -10 287 282 99 28 chr11 12486441 12486583 -138296970 + L1ME LINE L1 5600 5751 -370 2514 116 7 52 chr11 12486766 12487204 -138296349 - L1MA9 LINE L1 -3 6309 5892 1106 141 134 119 chr11 12487204 12487352 -138296201 + MER2 DNA MER2_type 16 160 -185 2217 132 0 0 chr11 12487352 12487662 -138295891 - AluSx SINE Alu -2 310 1 1106 141 134 119 chr11 12487662 12487833 -138295720 + MER2 DNA MER2_type 160 340 -5 575 92 0 0 chr11 12487841 12487917 -138295636 - L1MA9 LINE L1 -398 5902 5827 470 295 0 7 chr11 12487964 12488103 -138295450 - LTR16C LTR ERVL 0 491 354 878 187 7 0 chr11 12488107 12488257 -138295296 + FRAM SINE Alu 1 146 -30 528 254 146 9 chr11 12488474 12488687 -138294866 - Tigger8 DNA MER2_type -174 492 251 757 172 8 0 chr11 12488689 12488811 -138294742 + FLAM_A SINE Alu 1 123 -10 763 238 81 0 chr11 12488908 12489068 -138294485 - MIR SINE MIR -75 187 15 350 321 46 0 chr11 12489084 12489193 -138294360 - Tigger8 DNA MER2_type -518 148 35 2154 148 97 8 chr11 12489469 12489860 -138293693 + MSTA LTR MaLR 3 428 0 302 176 44 29 chr11 12490241 12490309 -138293244 - MLT1G LTR MaLR 0 590 522 802 156 38 59 chr11 12490409 12490595 -138292958 - MER53 DNA DNA -7 182 1 666 285 65 43 chr11 12490745 12491022 -138292531 - MLT1H1 LTR MaLR -272 283 1 31 26 0 0 chr11 12491281 12491319 -138292234 + AT_rich Low_complexity Low_complexity 1 38 0 1511 133 17 4 chr11 12491466 12491699 -138291854 - AluSx SINE Alu -75 237 2 1502 179 78 38 chr11 12491835 12491987 -138291566 + MLT1A1 LTR MaLR 5 149 -216 1893 146 3 3 chr11 12491987 12492288 -138291265 + AluJb SINE Alu 1 301 -11 1502 179 78 38 chr11 12492288 12492416 -138291137 + MLT1A1 LTR MaLR 149 304 -61 2067 119 0 0 chr11 12492416 12492710 -138290843 + AluSx SINE Alu 1 294 -18 1502 179 78 38 chr11 12492710 12492775 -138290778 + MLT1A1 LTR MaLR 304 365 0 351 286 124 0 chr11 12492811 12492916 -138290637 - L2 LINE L2 -13 3300 3183 418 214 0 0 chr11 12493537 12493621 -138289932 + MER103 DNA DNA 75 158 -8 1719 206 79 12 chr11 12493635 12494066 -138289487 + MLT1C LTR MaLR 6 465 -2 327 277 40 33 chr11 12494120 12494283 -138289270 - MIR SINE MIR -62 146 9 869 220 165 20 chr11 12494747 12495002 -138288551 + AluSg SINE Alu 1 292 -8 1576 167 7 7 chr11 12495011 12495298 -138288255 - AluJb SINE Alu -25 287 1 296 290 72 83 chr11 12495542 12495818 -138287735 - L1ME4a LINE L1 -244 5877 5605 1850 158 0 13 chr11 12495821 12496119 -138287434 - AluJb SINE Alu -18 294 1 2862 168 33 58 chr11 12496130 12497035 -138286518 - L1MB8 LINE L1 -2 6176 5217 1918 135 13 7 chr11 12497035 12497339 -138286214 - AluSx SINE Alu -6 306 1 2862 168 33 58 chr11 12497339 12497557 -138285996 - L1MB8 LINE L1 -961 5217 4995 1148 168 0 5 chr11 12497574 12497590 -138285963 + AluJb SINE Alu 118 133 -179 1597 132 48 44 chr11 12497590 12497885 -138285668 + AluSg SINE Alu 5 300 -10 1148 168 0 5 chr11 12497885 12498064 -138285489 + AluJb SINE Alu 133 312 0 1791 246 118 33 chr11 12498149 12498693 -138284860 - MLT1F1 LTR MaLR -2 565 2 287 199 80 119 chr11 12498748 12498899 -138284654 + MER5B DNA MER1_type 33 177 -1 198 0 0 0 chr11 12499718 12499740 -138283813 + (T)n Simple_repeat Simple_repeat 1 22 0 211 361 0 14 chr11 12499802 12499874 -138283679 + L2 LINE L2 3123 3193 -79 180 344 185 13 chr11 12500108 12500416 -138283137 - L3 LINE CR1 -114 1463 1103 2332 88 0 0 chr11 12500845 12501152 -138282401 + AluSg SINE Alu 1 307 -3 232 189 38 5 chr11 12502610 12502671 -138280882 + MIR SINE MIR 106 167 -41 510 313 53 31 chr11 12503066 12503293 -138280260 + MIR SINE MIR 19 250 -12 2128 102 7 10 chr11 12504379 12504682 -138278871 - AluSc SINE Alu -7 302 1 415 309 196 21 chr11 12504713 12505004 -138278549 - MLT1J2 LTR MaLR 0 450 109 2104 179 116 15 chr11 12505154 12505612 -138277941 + MLT1D LTR MaLR 1 504 -1 240 267 0 78 chr11 12506025 12506115 -138277438 + MIR SINE MIR 6 88 -174 1031 254 124 54 chr11 12506121 12506440 -138277113 - MLT1G1 LTR MaLR -1 578 219 774 162 0 22 chr11 12506440 12506576 -138276977 + FLAM_C SINE Alu 1 133 0 1031 254 124 54 chr11 12506576 12506812 -138276741 - MLT1G1 LTR MaLR -360 219 1 216 291 201 0 chr11 12506812 12506946 -138276607 + MIR SINE MIR 91 251 -11 203 321 0 37 chr11 12506939 12507020 -138276533 + L2 LINE L2 3199 3276 -37 * 1015 218 137 79 chr11 12507054 12507573 -138275980 - MLT1H LTR MaLR 0 549 1 305 279 89 32 chr11 12507718 12507876 -138275677 - MLT1L LTR MaLR -52 563 397 257 266 0 0 chr11 12507937 12508001 -138275552 - MLT1L LTR MaLR -343 272 209 1866 186 55 50 chr11 12508030 12508486 -138275067 - MLT1C LTR MaLR -5 462 5 183 129 0 0 chr11 12508562 12508593 -138274960 + (TGAA)n Simple_repeat Simple_repeat 2 32 0 210 256 97 120 chr11 12509829 12509925 -138273628 + L2 LINE L2 2626 2723 -549 942 220 204 27 chr11 12509925 12510366 -138273187 + LTR33 LTR ERVL 3 521 0 210 256 97 120 chr11 12510366 12510421 -138273132 + L2 LINE L2 2723 2778 -494 1934 127 0 13 chr11 12510421 12510721 -138272832 + AluSq SINE Alu 1 296 -17 210 256 97 120 chr11 12510721 12510935 -138272618 + L2 LINE L2 2778 2981 -291 5915 101 7 1 chr11 12510955 12511785 -138271768 - L1PA10 LINE L1 -2 6166 5332 1655 132 18 0 chr11 12511784 12512065 -138271488 + L1PA10 LINE L1 5055 5340 -806 * 222 91 0 0 chr11 12512151 12512184 -138271369 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 13765 28 2 0 chr11 12513003 12515382 -138268171 - L1PA4 LINE L1 0 6155 3773 304 272 68 20 chr11 12515961 12516108 -138267445 + MLT1K LTR MaLR 402 555 -33 1424 237 27 29 chr11 12516479 12516892 -138266661 + L1ME3A LINE L1 5545 5956 -214 233 290 57 80 chr11 12516965 12517028 -138266525 + L1ME3A LINE L1 5988 6051 -119 2216 91 0 7 chr11 12517028 12517325 -138266228 - AluSx SINE Alu -17 295 1 233 290 57 80 chr11 12517325 12517437 -138266116 + L1ME3A LINE L1 6051 6159 -11 192 294 0 0 chr11 12517993 12518044 -138265509 + L2 LINE L2 3201 3251 -21 265 351 61 7 chr11 12519512 12519660 -138263893 + MIR3 SINE MIR 3 158 -50 988 156 18 6 chr11 12520060 12520227 -138263326 - FRAM SINE Alu -8 168 1 1652 200 74 56 chr11 12520259 12520719 -138262834 + MLT1H LTR MaLR 1 531 -24 1048 222 151 67 chr11 12520721 12521270 -138262283 - MLT1G1 LTR MaLR 0 595 1 236 203 0 81 chr11 12521456 12521530 -138262023 + MER117 DNA MER1_type 96 163 -34 1904 94 23 0 chr11 12521935 12522191 -138261362 + L1PA10 LINE L1 5905 6166 -2 650 119 0 10 chr11 12522850 12522951 -138260602 + AluSg/x SINE Alu 202 301 -9 1610 168 0 4 chr11 12523336 12523598 -138259955 - AluSx SINE Alu -49 263 3 267 312 0 11 chr11 12524003 12524096 -138259457 + CT-rich Low_complexity Low_complexity 5 96 0 206 125 0 25 chr11 12524098 12524138 -138259415 + (TTCC)n Simple_repeat Simple_repeat 3 41 0 299 243 28 103 chr11 12524189 12524296 -138259257 + MIR SINE MIR 49 146 -62 300 298 81 0 chr11 12524897 12525021 -138258532 + MER117 DNA MER1_type 9 142 -55 342 318 109 22 chr11 12525233 12525554 -138257999 + L1M4 LINE L1 4504 4852 -1294 909 150 0 0 chr11 12525891 12526024 -138257529 + FLAM_C SINE Alu 1 133 0 935 90 0 0 chr11 12526621 12526743 -138256810 + AluSg SINE Alu 1 122 -188 303 109 87 0 chr11 12526767 12526905 -138256648 + (TA)n Simple_repeat Simple_repeat 1 150 0 1165 140 5 0 chr11 12526910 12527096 -138256457 + AluSq SINE Alu 127 313 0 602 289 7 0 chr11 12528178 12528330 -138255223 - MIR SINE MIR -25 237 85 237 273 203 75 chr11 12528448 12528635 -138254918 - L2 LINE L2 0 3272 3062 592 222 105 6 chr11 12528641 12528803 -138254750 - MER5B DNA MER1_type 0 178 1 2888 123 27 7 chr11 12528893 12529342 -138254211 - LTR32 LTR ERVL 0 471 14 566 295 134 42 chr11 12529358 12529761 -138253792 - MLT1K LTR MaLR -61 527 88 183 260 82 41 chr11 12529843 12529916 -138253637 - L2 LINE L2 -568 2746 2671 1723 151 7 7 chr11 12529926 12530218 -138253335 - AluSx SINE Alu -7 305 14 324 194 58 87 chr11 12530247 12530350 -138253203 + AluJ/FLAM SINE Alu 1 61 -241 890 164 7 7 chr11 12530466 12530618 -138252935 + FRAM SINE Alu 1 146 -30 270 339 194 25 chr11 12530623 12531138 -138252415 - L2 LINE L2 -685 2629 2202 1620 161 33 13 chr11 12531138 12531443 -138252110 + AluJb SINE Alu 1 311 -1 270 339 194 25 chr11 12531443 12531671 -138251882 - L2 LINE L2 -1112 2202 1761 741 129 26 0 chr11 12531833 12531949 -138251604 + L1MB5 LINE L1 5948 6066 -108 355 90 62 0 chr11 12531972 12532030 -138251523 + L1MB5 LINE L1 6042 6103 -71 1723 144 41 0 chr11 12532033 12532324 -138251229 - AluSx SINE Alu 0 302 1 389 311 135 7 chr11 12532326 12532474 -138251079 - MIR SINE MIR -80 182 16 426 268 143 12 chr11 12533677 12533845 -138249708 + MIR SINE MIR 13 202 -60 1423 280 101 21 chr11 12533890 12534384 -138249169 - MLT2F LTR ERVL 0 663 109 2164 116 0 0 chr11 12534384 12534686 -138248867 + AluSx SINE Alu 1 302 -10 1423 280 101 21 chr11 12534686 12534805 -138248748 - MLT2F LTR ERVL -554 109 1 256 253 11 66 chr11 12535480 12535571 -138247982 - L2 LINE L2 -1 3271 3186 1256 259 72 42 chr11 12535623 12536051 -138247502 - LTR16C LTR ERVL 0 491 51 600 299 148 15 chr11 12536090 12536428 -138247125 + MLT1K LTR MaLR 32 414 -174 358 291 0 0 chr11 12536845 12536931 -138246622 + L2 LINE L2 3227 3312 -1 370 308 64 19 chr11 12537141 12537297 -138246256 + MIR SINE MIR 2 164 -98 624 237 79 0 chr11 12537486 12537625 -138245928 - MIR SINE MIR -107 155 6 2398 115 0 0 chr11 12539225 12539562 -138243991 - AluSq SINE Alu 0 337 1 315 122 0 0 chr11 12539605 12539654 -138243899 + (TCCC)n Simple_repeat Simple_repeat 3 51 0 2296 124 3 10 chr11 12539656 12539970 -138243583 - AluSx SINE Alu 0 312 1 240 163 0 0 chr11 12540627 12540670 -138242883 + CT-rich Low_complexity Low_complexity 2 44 0 1403 132 5 10 chr11 12540686 12540890 -138242663 - AluSx SINE Alu -107 205 3 601 251 86 11 chr11 12541315 12541502 -138242051 + MIR SINE MIR 10 210 -52 252 278 82 0 chr11 12541916 12542013 -138241540 - L2 LINE L2 -9 3263 3159 405 253 163 25 chr11 12544174 12544376 -138239177 - MIR SINE MIR -13 249 20 264 167 11 133 chr11 12545420 12545471 -138238082 - MIR SINE MIR -113 149 112 649 174 7 43 chr11 12545471 12545609 -138237944 + FLAM_C SINE Alu 1 133 0 264 167 11 133 chr11 12545609 12545647 -138237906 - MIR SINE MIR -150 112 71 1520 144 86 16 chr11 12545744 12546057 -138237496 + MER44D DNA MER2_type 3 607 -2 314 285 62 73 chr11 12546269 12546637 -138236916 - L1MC5 LINE L1 -41 7920 7557 855 188 8 0 chr11 12547692 12547825 -138235728 - AluJo SINE Alu -178 134 1 2303 96 13 7 chr11 12548181 12548484 -138235069 - AluY SINE Alu -6 305 1 234 0 0 0 chr11 12548558 12548584 -138234969 + (T)n Simple_repeat Simple_repeat 1 26 0 230 287 185 13 chr11 12550913 12551070 -138232483 + MIR SINE MIR 79 262 0 220 242 51 56 chr11 12551977 12552150 -138231403 - MIR3 SINE MIR 0 208 60 479 286 26 26 chr11 12554323 12554477 -138229076 + MIR SINE MIR 81 234 -28 2176 118 10 3 chr11 12554619 12554915 -138228638 - AluSx SINE Alu -14 298 1 335 310 0 10 chr11 12555150 12555250 -138228303 - L3 LINE CR1 -224 1353 1255 2217 234 96 10 chr11 12555257 12555937 -138227616 - HsTC2a DNA Tc2 -5 739 2 794 312 199 13 chr11 12555938 12556547 -138227006 - L3 LINE CR1 -319 1258 537 2307 80 0 7 chr11 12557470 12557759 -138225794 - AluSg SINE Alu -22 288 2 316 352 83 10 chr11 12557818 12558011 -138225542 + L1MC4a LINE L1 5870 6076 -1732 274 197 79 40 chr11 12558778 12558854 -138224699 - L2 LINE L2 -7 3265 3187 21 0 0 0 chr11 12558911 12558932 -138224621 + AT_rich Low_complexity Low_complexity 1 21 0 666 226 52 87 chr11 12559515 12559803 -138223750 - L2 LINE L2 0 3313 3036 510 259 20 27 chr11 12560080 12560227 -138223326 + MIR SINE MIR 108 253 -9 487 263 143 0 chr11 12560507 12560682 -138222871 - MIR SINE MIR -14 248 49 647 224 154 20 chr11 12560957 12561158 -138222395 + MIR SINE MIR 35 262 0 22 35 0 0 chr11 12561171 12561200 -138222353 + AT_rich Low_complexity Low_complexity 1 29 0 363 250 29 19 chr11 12561542 12561646 -138221907 - MIR SINE MIR -67 195 91 210 143 0 0 chr11 12561828 12561863 -138221690 + (T)n Simple_repeat Simple_repeat 1 35 0 1894 145 0 17 chr11 12561922 12562218 -138221335 - AluJo SINE Alu -19 293 3 2957 13 0 0 chr11 12563219 12563532 -138220021 + AluYb8 SINE Alu 1 313 -5 569 275 47 28 chr11 12563943 12564154 -138219399 + MIR SINE MIR 48 262 0 387 331 98 11 chr11 12564119 12564303 -138219250 - MIR SINE MIR -16 246 47 * 2264 114 13 0 chr11 12565281 12565589 -138217964 - AluSx SINE Alu 0 312 1 411 263 41 53 chr11 12566251 12566422 -138217131 + MIR SINE MIR 76 244 -18 316 217 0 0 chr11 12566854 12566923 -138216630 - MLT1K LTR MaLR -2 586 518 580 208 33 0 chr11 12566927 12567047 -138216506 + AluJo SINE Alu 13 136 -176 782 180 180 5 chr11 12567448 12567659 -138215894 - MIR SINE MIR -1 261 14 750 292 16 24 chr11 12567673 12567923 -138215630 - MIR SINE MIR -1 261 14 304 185 31 0 chr11 12568166 12568231 -138215322 - L2 LINE L2 0 3272 3206 398 301 76 59 chr11 12568458 12568694 -138214859 + MIR SINE MIR 3 242 -20 246 213 0 113 chr11 12568757 12568837 -138214716 - MIR3 SINE MIR -25 183 113 210 37 0 0 chr11 12569804 12569831 -138213722 + (TG)n Simple_repeat Simple_repeat 1 27 0 202 291 38 113 chr11 12570813 12571026 -138212527 + L2 LINE L2 3076 3272 0 233 336 52 15 chr11 12571267 12571401 -138212152 - MIR3 SINE MIR -41 167 29 336 282 118 20 chr11 12572431 12572626 -138210927 - MIR3 SINE MIR -46 216 3 223 220 0 0 chr11 12572647 12572697 -138210856 + L2 LINE L2 3263 3312 -1 326 323 27 48 chr11 12573386 12573572 -138209981 + MIR3 SINE MIR 5 186 -22 551 264 73 28 chr11 12574130 12574308 -138209245 - MIR3 SINE MIR -6 202 17 460 301 150 10 chr11 12574870 12575063 -138208490 - MIR SINE MIR -20 242 23 334 351 140 30 chr11 12575140 12575476 -138208077 - L2 LINE L2 -14 3258 2886 237 65 0 0 chr11 12576139 12576170 -138207383 + (GA)n Simple_repeat Simple_repeat 1 31 0 7060 45 7 0 chr11 12578218 12579431 -138204122 + L1PA5 LINE L1 4936 6154 0 289 216 81 0 chr11 12579531 12579605 -138203948 - L2 LINE L2 0 3272 3193 255 247 91 0 chr11 12579910 12579987 -138203566 + L2 LINE L2 3188 3271 -1 243 361 82 25 chr11 12580000 12580158 -138203395 - MER5B DNA MER1_type -1 177 11 631 253 19 0 chr11 12581099 12581257 -138202296 - MIR SINE MIR -74 188 28 485 337 93 51 chr11 12581296 12582075 -138201478 - L2 LINE L2 -257 3015 2205 279 319 58 5 chr11 12582166 12582354 -138201199 - L2 LINE L2 -1366 1948 1751 628 162 43 0 chr11 12582545 12582662 -138200891 + AluJb SINE Alu 188 309 -3 783 315 72 17 chr11 12583675 12584024 -138199529 - MLT1J2 LTR MaLR 0 450 83 2186 118 3 31 chr11 12584214 12584536 -138199017 + AluSq SINE Alu 1 313 0 1031 143 54 93 chr11 12585193 12585235 -138198318 - L1MB3 LINE L1 -9 6174 6132 1890 151 3 32 chr11 12585235 12585547 -138198006 - AluJo SINE Alu -9 303 1 1031 143 54 93 chr11 12585547 12585655 -138197898 - L1MB3 LINE L1 -51 6132 6036 1803 106 0 0 chr11 12585655 12585881 -138197672 - AluSg SINE Alu -21 289 64 1031 143 54 93 chr11 12585881 12585987 -138197566 - L1MB3 LINE L1 -147 6036 5927 767 266 104 12 chr11 12586647 12586985 -138196568 - L1ME4a LINE L1 -10 6111 5743 237 361 62 8 chr11 12587105 12587235 -138196318 + MIR SINE MIR 16 154 -54 21 57 0 0 chr11 12587460 12587495 -138196058 + AT_rich Low_complexity Low_complexity 1 35 0 231 232 0 0 chr11 12587505 12587561 -138195992 + (CA)n Simple_repeat Simple_repeat 1 56 0 214 254 0 34 chr11 12587564 12587623 -138195930 + (CATATA)n Simple_repeat Simple_repeat 5 61 0 570 196 12 24 chr11 12587626 12587794 -138195759 + (CATA)n Simple_repeat Simple_repeat 2 167 0 299 305 195 11 chr11 12590053 12590227 -138193326 - MIR SINE MIR -36 226 21 1238 152 39 17 chr11 12590243 12590474 -138193079 + MER46A DNA MER2_type 1 236 0 1114 171 5 14 chr11 12590864 12591075 -138192478 + AluSx SINE Alu 3 211 -101 219 186 0 0 chr11 12591084 12591127 -138192426 + GA-rich Low_complexity Low_complexity 2 44 0 533 190 0 10 chr11 12591786 12591886 -138191667 + AluJb SINE Alu 2 100 -212 279 290 83 59 chr11 12592990 12593159 -138190394 - MIR SINE MIR -12 250 78 1027 285 72 42 chr11 12593388 12593816 -138189737 + LTR16C LTR ERVL 51 491 0 218 275 11 66 chr11 12593868 12593959 -138189594 + L2 LINE L2 3186 3271 -1 520 252 87 0 chr11 12596506 12596633 -138186920 + MIR SINE MIR 18 155 -107 374 308 64 19 chr11 12596822 12596978 -138186575 - MIR SINE MIR -98 164 2 306 309 0 0 chr11 12597188 12597272 -138186281 - L2 LINE L2 -1 3312 3229 237 65 0 0 chr11 12598045 12598076 -138185477 + (GA)n Simple_repeat Simple_repeat 1 31 0 683 295 68 0 chr11 12598566 12598773 -138184780 + L2 LINE L2 3093 3313 0 277 339 161 0 chr11 12598977 12599107 -138184446 + L2 LINE L2 3105 3255 -17 2058 111 3 46 chr11 12600245 12600569 -138182984 + AluSq SINE Alu 1 310 -3 513 272 12 58 chr11 12600725 12600898 -138182655 + MIR SINE MIR 42 206 -56 1107 181 5 0 chr11 12601032 12601242 -138182311 + AluJb SINE Alu 92 302 -10 369 265 58 155 chr11 12601407 12601698 -138181855 + L2 LINE L2 2985 3247 -25 540 205 26 8 chr11 12602611 12602728 -138180825 + L1MB5 LINE L1 5948 6066 -108 259 157 59 0 chr11 12602756 12602807 -138180746 + L1MB7 LINE L1 6049 6102 -82 1313 176 40 15 chr11 12602812 12603105 -138180448 - AluSx SINE Alu 0 302 3 404 309 128 7 chr11 12603109 12603258 -138180295 - MIR SINE MIR -80 182 16 384 312 32 25 chr11 12604612 12604769 -138178784 + MIR SINE MIR 81 238 -24 336 206 41 14 chr11 12604919 12604992 -138178561 - AluSg/x SINE Alu -15 285 211 360 115 0 33 chr11 12605093 12605154 -138178399 + Alu SINE Alu 242 300 0 243 242 32 89 chr11 12605601 12605725 -138177828 + MLT1K LTR MaLR 411 527 -61 2336 183 27 7 chr11 12605741 12606190 -138177363 + LTR32 LTR ERVL 14 471 0 344 286 110 13 chr11 12606287 12606441 -138177112 + MER5B DNA MER1_type 8 176 -2 1191 197 32 12 chr11 12606570 12606819 -138176734 + MER61B LTR ERV1 172 425 0 243 273 124 8 chr11 12606947 12607068 -138176485 + LTR16A LTR ERVL 316 450 0 414 242 11 11 chr11 12607074 12607169 -138176384 - L2 LINE L2 -33 3280 3186 356 187 51 23 chr11 12607229 12607316 -138176237 + MLT1J LTR MaLR 239 411 -195 1140 197 87 3 chr11 12607316 12607615 -138175938 + MER33 DNA MER1_type 1 324 0 230 310 164 14 chr11 12608365 12608578 -138174975 - L1MC4a LINE L1 -1694 6114 5870 2103 87 0 7 chr11 12608637 12608926 -138174627 + AluSg SINE Alu 2 288 -22 1791 141 0 10 chr11 12610138 12610435 -138173118 + AluSx SINE Alu 2 295 -17 1315 249 27 29 chr11 12610571 12610984 -138172569 - L1ME3A LINE L1 -214 5956 5545 254 279 54 41 chr11 12611358 12611505 -138172048 - MLT1K LTR MaLR -38 550 402 771 304 77 23 chr11 12612498 12612847 -138170706 - MLT1J2 LTR MaLR 0 450 83 2083 112 3 31 chr11 12613037 12613359 -138170194 + AluSq SINE Alu 1 313 0 549 161 0 85 chr11 12614016 12614058 -138169495 - L1MB3 LINE L1 -9 6174 6130 1415 189 3 32 chr11 12614058 12614370 -138169183 - AluJo SINE Alu -9 303 1 549 161 0 85 chr11 12614370 12614457 -138169096 - L1MB3 LINE L1 -53 6130 6056 1333 140 0 18 chr11 12614478 12614707 -138168846 - AluSg/x SINE Alu -21 289 65 519 211 0 0 chr11 12614710 12614814 -138168739 - L1MB3 LINE L1 -153 6030 5927 1469 190 0 0 chr11 12615366 12615640 -138167913 + AluSx SINE Alu 3 276 -36 329 314 120 23 chr11 12616656 12616831 -138166722 + MIR SINE MIR 47 238 -24 * 496 284 53 21 chr11 12616826 12617016 -138166537 - MIR SINE MIR -19 243 48 2498 45 0 0 chr11 12617429 12617738 -138165815 - AluYb8 SINE Alu -7 311 3 524 304 179 9 chr11 12618949 12619173 -138164380 - MIR SINE MIR 0 262 1 287 281 0 0 chr11 12619529 12619586 -138163967 - L2 LINE L2 -16 3297 3241 205 205 26 0 chr11 12620379 12620418 -138163135 + L2 LINE L2 3255 3294 -19 587 304 78 0 chr11 12621066 12621270 -138162283 - MIR SINE MIR -14 248 29 914 240 86 5 chr11 12621322 12621543 -138162010 + MER8 DNA MER2_type 1 239 0 185 322 192 7 chr11 12623624 12623770 -138159783 + MIR SINE MIR 79 251 -11 520 257 22 22 chr11 12624295 12624431 -138159122 + MIR SINE MIR 16 151 -111 1522 157 39 0 chr11 12624431 12624686 -138158867 + MER2 DNA MER2_type 1 265 -80 381 271 119 46 chr11 12624824 12624975 -138158578 - MIR SINE MIR -34 228 67 1035 250 135 20 chr11 12625194 12625633 -138157920 + L2 LINE L2 2649 3036 -277 188 29 0 88 chr11 12625633 12625667 -138157886 + (CA)n Simple_repeat Simple_repeat 2 32 0 1035 250 135 20 chr11 12625667 12625691 -138157862 + L2 LINE L2 3036 3056 -257 195 42 0 0 chr11 12625691 12625715 -138157838 + (TC)n Simple_repeat Simple_repeat 1 24 0 1035 250 135 20 chr11 12625715 12625749 -138157804 + L2 LINE L2 3056 3085 -228 2151 120 0 0 chr11 12625749 12626057 -138157496 - AluSx SINE Alu -2 310 3 1035 250 135 20 chr11 12626057 12626119 -138157434 + L2 LINE L2 3085 3138 -175 1538 193 3 7 chr11 12626119 12626414 -138157139 - AluJb SINE Alu -18 294 1 1035 250 135 20 chr11 12626414 12626440 -138157113 + L2 LINE L2 3138 3313 0 2657 184 62 17 chr11 12626489 12627072 -138156481 + L1MB3 LINE L1 5568 6176 -7 644 177 14 14 chr11 12627090 12627231 -138156322 + Charlie5 DNA MER1_type 2238 2378 -234 1359 206 0 4 chr11 12627594 12627856 -138155697 + AluSx SINE Alu 3 263 -49 661 117 0 10 chr11 12628241 12628344 -138155209 - AluSg/x SINE Alu -9 301 200 1676 132 19 4 chr11 12629002 12629260 -138154293 - L1PA10 LINE L1 -2 6166 5905 236 203 0 81 chr11 12629667 12629741 -138153812 - MER117 DNA MER1_type -34 163 96 842 244 147 65 chr11 12629927 12630477 -138153076 + MLT1G1 LTR MaLR 1 595 0 804 184 81 10 chr11 12630705 12630930 -138152623 - MER61B LTR ERV1 -97 328 1 26 74 0 0 chr11 12631052 12631106 -138152447 + AT_rich Low_complexity Low_complexity 1 54 0 1461 226 33 19 chr11 12631559 12631921 -138151632 - L1MB4 LINE L1 -1 6179 5813 1399 134 61 4 chr11 12631924 12632201 -138151352 - Charlie5 DNA MER1_type -82 2530 2238 2674 174 58 28 chr11 12632207 12632805 -138150748 - L1MB3 LINE L1 0 6183 5568 248 157 135 90 chr11 12632854 12632880 -138150673 - L2 LINE L2 0 3313 3290 1242 235 3 3 chr11 12632880 12633174 -138150379 + AluJb SINE Alu 1 294 -18 248 157 135 90 chr11 12633174 12633236 -138150317 - L2 LINE L2 -23 3290 3221 1695 140 0 4 chr11 12633236 12633500 -138150053 + AluSq SINE Alu 3 265 -48 1049 131 0 0 chr11 12633702 12633862 -138149691 + FRAM SINE Alu 1 40 0 426 249 186 70 chr11 12634127 12634264 -138149289 - L1MC4a LINE L1 -1906 5902 5782 2050 112 0 0 chr11 12634264 12634564 -138148989 - AluSg SINE Alu 0 305 6 426 249 186 70 chr11 12634564 12634770 -138148783 - L1MC4a LINE L1 -2026 5782 5518 1695 157 3 0 chr11 12635068 12635354 -138148199 + AluJb SINE Alu 16 302 -10 435 253 58 154 chr11 12635519 12635811 -138147742 + L2 LINE L2 2985 3248 -24 1281 174 87 3 chr11 12636659 12636958 -138146595 - MER33 DNA MER1_type 0 324 1 356 187 51 23 chr11 12636958 12637045 -138146508 - MLT1J LTR MaLR -195 316 239 437 232 11 11 chr11 12637104 12637199 -138146354 + L2 LINE L2 3186 3280 -33 293 273 116 0 chr11 12637205 12637326 -138146227 - LTR16A LTR ERVL 0 450 316 738 159 8 8 chr11 12637454 12637580 -138145973 - MER61A LTR ERV1 0 343 218 934 235 25 42 chr11 12638201 12638361 -138145192 - MIR SINE MIR -25 237 81 1733 151 10 7 chr11 12638361 12638653 -138144900 + AluJb SINE Alu 6 298 -14 934 235 25 42 chr11 12638653 12638730 -138144823 - MIR SINE MIR -181 81 4 271 301 160 0 chr11 12639972 12640100 -138143453 - MIR SINE MIR -67 141 2 447 245 10 0 chr11 12640172 12640274 -138143279 - Charlie4a DNA MER1_type 0 508 406 988 188 35 99 chr11 12640299 12640581 -138142972 - Charlie4a DNA MER1_type -206 302 39 2208 111 3 49 chr11 12641192 12641517 -138142036 + AluSq SINE Alu 1 310 -3 512 272 12 58 chr11 12641674 12641847 -138141706 + MIR SINE MIR 42 206 -56 267 367 85 19 chr11 12642208 12642467 -138141086 - L2 LINE L2 -1303 2011 1736 1061 107 0 0 chr11 12643570 12643710 -138139843 + AluJb SINE Alu 156 295 -17 2560 107 43 36 chr11 12643729 12644168 -138139385 + MER4D LTR ERV1 457 898 -5 946 192 93 10 chr11 12644186 12644516 -138139037 - MER21B LTR ERV1 -467 396 3 209 228 0 35 chr11 12644529 12644586 -138138967 - L2 LINE L2 -1034 2280 2226 4385 157 27 29 chr11 12644746 12645947 -138137606 + L1MB3 LINE L1 4958 6157 -26 327 270 35 61 chr11 12646010 12646125 -138137428 - MIR SINE MIR -34 228 117 356 204 86 0 chr11 12646422 12646515 -138137038 + L2 LINE L2 2693 2793 -521 498 181 0 0 chr11 12646654 12646759 -138136794 + (TGGA)n Simple_repeat Simple_repeat 4 108 0 192 250 0 0 chr11 12646768 12646804 -138136749 - L2 LINE L2 -46 3267 3232 183 80 0 0 chr11 12647747 12647772 -138135781 + (T)n Simple_repeat Simple_repeat 1 25 0 22 35 0 0 chr11 12648025 12648054 -138135499 + AT_rich Low_complexity Low_complexity 1 29 0 226 214 0 0 chr11 12648114 12648156 -138135397 + MIR SINE MIR 110 151 -111 241 268 12 24 chr11 12648607 12648689 -138134864 + CT-rich Low_complexity Low_complexity 2 82 0 1336 167 53 17 chr11 12649553 12649852 -138133701 + MER33 DNA MER1_type 5 314 -10 1015 195 14 32 chr11 12649852 12650073 -138133480 + MER20 DNA MER1_type 1 217 -2 544 238 107 42 chr11 12650199 12650367 -138133186 + MIR SINE MIR 84 262 0 221 0 35 0 chr11 12650790 12650819 -138132734 + (TTTTTG)n Simple_repeat Simple_repeat 1 30 0 248 356 70 0 chr11 12650819 12650934 -138132619 + L2 LINE L2 3150 3272 0 440 302 68 29 chr11 12652224 12652429 -138131124 + MIR SINE MIR 12 224 -38 180 0 0 0 chr11 12652493 12652513 -138131040 + (ATTTG)n Simple_repeat Simple_repeat 3 22 0 677 291 73 45 chr11 12652518 12652676 -138130877 - L2 LINE L2 -4 3309 3157 2284 108 0 23 chr11 12652676 12652981 -138130572 + AluSx SINE Alu 1 298 -14 677 291 73 45 chr11 12652981 12652994 -138130559 - L2 LINE L2 -156 3157 3146 2079 126 0 11 chr11 12652994 12653280 -138130273 + AluJb SINE Alu 20 302 -10 677 291 73 45 chr11 12653280 12653465 -138130088 - L2 LINE L2 -167 3146 2942 191 35 0 35 chr11 12653530 12653559 -138129994 + (CCCCCA)n Simple_repeat Simple_repeat 4 31 0 303 143 36 0 chr11 12653615 12653671 -138129882 + MER58 DNA MER1_type 2348 2405 -15 2260 105 0 14 chr11 12653990 12654286 -138129267 + AluSx SINE Alu 6 297 -15 490 291 33 39 chr11 12654332 12654514 -138129039 - MIR SINE MIR -8 254 74 189 319 51 0 chr11 12655113 12655191 -138128362 + MIR SINE MIR 17 99 -109 454 315 199 19 chr11 12655191 12655407 -138128146 + MIR SINE MIR 4 258 -4 329 255 101 60 chr11 12655400 12655549 -138128004 + MIR SINE MIR 92 246 -16 * 857 242 13 17 chr11 12655778 12656009 -138127544 + AluSg SINE Alu 56 285 -25 21 0 0 0 chr11 12656009 12656030 -138127523 + AT_rich Low_complexity Low_complexity 1 21 0 323 288 73 101 chr11 12656043 12656331 -138127222 + L1MC4a LINE L1 5775 6054 -1754 1127 131 0 0 chr11 12656430 12656590 -138126963 - FRAM SINE Alu 0 40 1 366 263 0 0 chr11 12656754 12656868 -138126685 + (TA)n Simple_repeat Simple_repeat 1 114 0 696 173 27 11 chr11 12656868 12657258 -138126295 + (TG)n Simple_repeat Simple_repeat 1 396 0 745 203 0 0 chr11 12657258 12657386 -138126167 - FLAM_C SINE Alu -14 129 2 752 255 10 25 chr11 12658690 12658886 -138124667 - MIR SINE MIR -1 261 69 269 250 0 0 chr11 12658885 12658941 -138124612 + L2 LINE L2 3256 3311 -2 * 257 303 20 10 chr11 12659141 12659240 -138124313 + MIR3 SINE MIR 96 195 -13 194 271 21 0 chr11 12659718 12659766 -138123787 + L2 LINE L2 3217 3265 -7 2411 98 0 13 chr11 12660238 12660554 -138122999 - AluSx SINE Alu 0 312 1 274 268 303 7 chr11 12662548 12662690 -138120863 + MIR SINE MIR 77 260 -2 21 0 0 0 chr11 12665838 12665859 -138117694 + AT_rich Low_complexity Low_complexity 1 21 0 1651 151 56 40 chr11 12666319 12666623 -138116930 + AluJo SINE Alu 1 309 -3 328 259 100 118 chr11 12666652 12666872 -138116681 + L1MC4 LINE L1 7826 8041 -1 1981 279 132 9 chr11 12667091 12667932 -138115621 - L2 LINE L2 -338 2976 2033 188 132 0 26 chr11 12668130 12668168 -138115385 + (TC)n Simple_repeat Simple_repeat 1 37 0 403 328 54 12 chr11 12668552 12668776 -138114777 + MIR SINE MIR 30 262 0 201 171 0 0 chr11 12668777 12668812 -138114741 + (TTA)n Simple_repeat Simple_repeat 2 36 0 557 269 130 23 chr11 12669475 12669691 -138113862 + MIR SINE MIR 14 252 -10 329 292 10 10 chr11 12670384 12670480 -138113073 + MIR SINE MIR 19 114 -148 617 230 93 0 chr11 12670506 12670645 -138112908 + MIR SINE MIR 89 240 -22 223 333 13 0 chr11 12671407 12671485 -138112068 - L2 LINE L2 -9 3304 3226 2351 91 0 10 chr11 12673176 12673474 -138110079 + AluSp SINE Alu 1 295 -18 931 254 45 0 chr11 12673662 12673882 -138109671 + MIR SINE MIR 28 257 -5 239 376 32 38 chr11 12673902 12674059 -138109494 + L2 LINE L2 3031 3186 -86 4227 166 62 8 chr11 12674125 12675212 -138108341 - L1MB7 LINE L1 0 6184 5034 195 258 146 30 chr11 12675220 12675355 -138108198 - MIR3 SINE MIR -75 133 2 211 325 0 36 chr11 12675361 12675444 -138108109 + L2 LINE L2 3193 3272 0 534 290 0 8 chr11 12675977 12676108 -138107445 + L2 LINE L2 3143 3272 0 196 236 18 18 chr11 12676318 12676373 -138107180 - L2 LINE L2 -557 2757 2703 1265 191 86 0 chr11 12676657 12676877 -138106676 - MER8 DNA MER2_type 0 239 1 648 294 78 0 chr11 12676929 12677133 -138106420 + MIR SINE MIR 29 248 -14 205 205 26 0 chr11 12677782 12677821 -138105732 - L2 LINE L2 -19 3294 3255 241 150 0 0 chr11 12679102 12679142 -138104411 - L2 LINE L2 -2 3270 3231 609 326 26 0 chr11 12680252 12680442 -138103111 - MIR SINE MIR -34 228 34 271 226 108 29 chr11 12681247 12681349 -138102204 - MIR SINE MIR -144 118 9 926 209 22 6 chr11 12681579 12681761 -138101792 + MER5A DNA MER1_type 5 189 0 216 0 0 0 chr11 12682338 12682362 -138101191 + (TG)n Simple_repeat Simple_repeat 1 24 0 796 228 179 8 chr11 12682364 12682632 -138100921 - MER58B DNA MER1_type -27 314 1 735 280 68 0 chr11 12683006 12683213 -138100340 + L2 LINE L2 3093 3313 0 257 323 141 0 chr11 12683447 12683546 -138100007 + L2 LINE L2 3143 3255 -17 996 97 18 24 chr11 12684441 12684606 -138098947 + MLT1C LTR MaLR 28 191 -276 216 0 0 0 chr11 12684684 12684708 -138098845 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1071 174 9 43 chr11 12684710 12684940 -138098613 - AluJb SINE Alu -31 281 60 1957 152 30 3 chr11 12684992 12685322 -138098231 + LTR32 LTR ERVL 14 352 -119 804 166 26 7 chr11 12685367 12685518 -138098035 + LTR32 LTR ERVL 318 471 0 2399 97 0 3 chr11 12685777 12686088 -138097465 - AluSx SINE Alu -2 310 1 831 239 44 5 chr11 12686186 12686391 -138097162 + MER20 DNA MER1_type 7 219 0 181 282 26 51 chr11 12687181 12687259 -138096294 + MIR SINE MIR 184 259 -3 269 263 33 25 chr11 12687283 12687401 -138096152 - MIR SINE MIR -50 212 94 222 291 254 0 chr11 12689275 12689385 -138094168 - MIR SINE MIR 0 262 125 265 188 0 0 chr11 12789385 12789433 -137994120 - Alu SINE Alu -260 48 1 2253 94 17 0 chr11 12790022 12790321 -137993232 - AluSq SINE Alu -9 304 1 825 192 94 86 chr11 12790584 12790829 -137992724 + MIR SINE MIR 2 248 -14 203 204 19 19 chr11 12790829 12790883 -137992670 + (CATAC)n Simple_repeat Simple_repeat 5 58 0 217 0 0 0 chr11 12791595 12791619 -137991934 + (TTTTC)n Simple_repeat Simple_repeat 2 180 0 2059 134 0 0 chr11 12791619 12791902 -137991651 - AluSx SINE Alu -29 283 1 618 85 0 0 chr11 12794484 12794578 -137988975 + (TC)n Simple_repeat Simple_repeat 1 94 0 213 39 0 0 chr11 12795475 12795501 -137988052 + (T)n Simple_repeat Simple_repeat 1 26 0 475 318 62 26 chr11 12795650 12795845 -137987708 - MIR SINE MIR -14 248 47 388 336 7 0 chr11 12796216 12796353 -137987200 - MIR SINE MIR -13 249 112 738 133 0 0 chr11 12796454 12796559 -137986994 - AluSq/x SINE Alu -207 106 2 434 265 10 10 chr11 12796560 12796658 -137986895 - MER2 DNA MER2_type -247 98 1 * 595 191 0 0 chr11 12796658 12796772 -137986781 + MER2 DNA MER2_type 97 210 -135 24 32 0 0 chr11 12796782 12796813 -137986740 + AT_rich Low_complexity Low_complexity 1 31 0 289 247 24 47 chr11 12796926 12797011 -137986542 - L2 LINE L2 0 3272 3190 274 310 139 53 chr11 12797606 12797887 -137985666 - L2 LINE L2 -13 3259 2955 373 277 233 15 chr11 12797940 12798142 -137985411 + MIR SINE MIR 5 250 -12 1113 311 181 30 chr11 12798159 12799279 -137984274 - L3 LINE CR1 -5 1572 284 2296 67 6 35 chr11 12799285 12799600 -137983953 - AluY SINE Alu 0 311 6 18982 67 13 1 chr11 12799700 12802336 -137981217 - L1P2 LINE L1 -608 5546 2882 469 271 33 0 chr11 12804110 12804232 -137979321 - L2 LINE L2 0 3313 3188 325 329 30 18 chr11 12804557 12804721 -137978832 + MIR SINE MIR 94 259 -3 370 288 55 43 chr11 12804843 12805006 -137978547 - MIR SINE MIR -50 212 48 1969 148 7 0 chr11 12805028 12805331 -137978222 + AluSx SINE Alu 2 306 -6 304 194 0 30 chr11 12805376 12805443 -137978110 + MER44D DNA MER2_type 1 65 -640 22273 39 3 0 chr11 12805543 12808222 -137975331 - L1P LINE L1 -2836 3310 623 768 55 0 0 chr11 12808220 12808311 -137975242 - L1P LINE L1 -6048 98 8 * 417 222 0 0 chr11 12808315 12808387 -137975166 + MER2 DNA MER2_type 274 345 0 1358 282 75 26 chr11 12808387 12809080 -137974473 + L1ME3 LINE L1 5225 5954 -208 417 39 0 0 chr11 12809856 12809907 -137973646 - L1P LINE L1 -2352 3794 3744 2283 110 0 0 chr11 12810036 12810335 -137973218 + AluSg SINE Alu 1 299 -11 18154 128 19 16 chr11 12810345 12812646 -137970907 + L1PA4 LINE L1 13 2324 -3822 216 0 0 0 chr11 12812646 12812670 -137970883 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 18154 128 19 16 chr11 12812670 12813230 -137970323 + L1PA4 LINE L1 2324 2881 -3265 17734 36 3 4 chr11 12813330 12816111 -137967442 + L1PA4 LINE L1 3370 6152 -3 1793 171 3 0 chr11 12816127 12816414 -137967139 - MER2 DNA MER2_type -57 288 1 367 299 17 0 chr11 12816488 12816626 -137966927 - L1M4 LINE L1 -1100 5046 4906 1260 258 60 30 chr11 12816740 12817306 -137966247 - L1M4 LINE L1 -1704 4442 3860 614 260 54 31 chr11 12817777 12818046 -137965507 + LTR40c LTR ERVL 154 464 -55 469 275 133 33 chr11 12818726 12818937 -137964616 - MIR SINE MIR -10 252 21 2289 90 3 3 chr11 12820744 12821034 -137962519 - AluSq SINE Alu -15 298 9 396 218 178 0 chr11 12821149 12821250 -137962303 + MER119 DNA MER1_type 3 121 -462 776 167 0 22 chr11 12821255 12821393 -137962160 + MER119 DNA MER1_type 448 582 -1 234 259 36 144 chr11 12821395 12821534 -137962019 + L2 LINE L2 3149 3272 0 2386 74 3 16 chr11 12822136 12822448 -137961105 + AluY SINE Alu 1 308 -3 2056 126 10 7 chr11 12823304 12823598 -137959955 + AluSx SINE Alu 1 295 -17 371 270 70 0 chr11 12823789 12823889 -137959664 - MIR SINE MIR -107 155 49 238 150 17 17 chr11 12825320 12825380 -137958173 + GA-rich Low_complexity Low_complexity 1 60 0 485 302 161 0 chr11 12826496 12826688 -137956865 + MIR SINE MIR 28 250 -12 22 0 0 0 chr11 12827298 12827320 -137956233 + AT_rich Low_complexity Low_complexity 1 22 0 351 328 65 32 chr11 12827342 12827589 -137955964 - MIR SINE MIR -7 255 1 898 179 25 46 chr11 12828155 12828351 -137955202 - MER3 DNA MER1_type -4 205 14 2212 129 0 0 chr11 12829610 12829919 -137953634 - AluSx SINE Alu -3 309 1 1979 142 43 58 chr11 12829946 12830340 -137953213 - MLT1B LTR MaLR 0 390 3 267 114 0 0 chr11 12831933 12831968 -137951585 + U2 snRNA snRNA 1 35 -153 351 266 32 40 chr11 12832173 12832297 -137951256 + MIR SINE MIR 59 181 -81 504 278 31 41 chr11 12832420 12832614 -137950939 + MIR SINE MIR 59 250 -12 490 308 55 103 chr11 12832647 12833014 -137950539 - L2 LINE L2 -8 3264 2916 303 247 181 24 chr11 12835274 12835440 -137948113 + MIR SINE MIR 71 262 0 2225 112 3 0 chr11 12835739 12836034 -137947519 - AluSx SINE Alu -16 296 1 1530 266 54 37 chr11 12836085 12837278 -137946275 + L1MEc LINE L1 46 4627 -1588 * 2224 214 44 118 chr11 12837264 12838094 -137945459 + L1M4 LINE L1 2132 2904 -3242 272 114 0 0 chr11 12838094 12838129 -137945424 - Alu SINE Alu -15 286 252 2224 214 44 118 chr11 12838129 12838332 -137945221 + L1M4 LINE L1 2904 3120 -3026 1421 266 54 76 chr11 12838304 12838759 -137944794 + L1MEc LINE L1 1479 1943 -4272 * 2405 63 0 26 chr11 12838759 12839062 -137944491 + AluY SINE Alu 1 295 -16 1421 266 54 76 chr11 12839062 12840098 -137943455 + L1MEc LINE L1 1943 2893 -3322 3411 138 28 32 chr11 12840119 12840356 -137943197 + MER39B LTR ERV1 48 284 -369 2374 66 3 10 chr11 12840356 12840660 -137942893 - AluY SINE Alu -9 302 1 3411 138 28 32 chr11 12840660 12841022 -137942531 + MER39B LTR ERV1 284 645 -8 1583 257 82 51 chr11 12841030 12841839 -137941714 + L1MEc LINE L1 2929 3773 -2442 1817 116 31 57 chr11 12841839 12842115 -137941438 + AluSg SINE Alu 1 269 -41 252 0 0 0 chr11 12842115 12842143 -137941410 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 1817 116 31 57 chr11 12842143 12842184 -137941369 + AluSg SINE Alu 269 310 0 1583 257 82 51 chr11 12842184 12842331 -137941222 + L1MEc LINE L1 3773 3914 -2301 * 6965 137 21 20 chr11 12842313 12844256 -137939297 + L1MA4 LINE L1 4179 6120 -249 1415 273 71 50 chr11 12844356 12846417 -137937136 - L1MC/D LINE L1 -748 5398 3694 23 33 0 0 chr11 12846901 12846931 -137936622 + AT_rich Low_complexity Low_complexity 1 30 0 1559 230 24 60 chr11 12847116 12847384 -137936169 - L1ME3 LINE L1 -2 6160 5884 2208 175 80 95 chr11 12847384 12847461 -137936092 + MLT1E1 LTR MaLR 1 78 -576 2058 139 3 0 chr11 12847461 12847755 -137935798 + AluSq SINE Alu 1 295 -18 2208 175 80 95 chr11 12847755 12848341 -137935212 + MLT1E1 LTR MaLR 78 654 0 1559 230 24 60 chr11 12848341 12848383 -137935170 - L1ME3 LINE L1 -278 5884 5842 2809 68 3 3 chr11 12848383 12848738 -137934815 - THE1A LTR MaLR 0 355 1 1559 230 24 60 chr11 12848738 12848960 -137934593 - L1ME3 LINE L1 -320 5842 5646 3240 188 6 30 chr11 12848960 12849593 -137933960 - MER67B LTR ERV1 0 661 44 480 167 48 0 chr11 12849627 12849711 -137933842 - MER67A LTR ERV1 -446 97 10 1352 218 30 52 chr11 12849716 12850121 -137933432 - L1ME3 LINE L1 -513 5649 5237 598 206 110 19 chr11 12850121 12850276 -137933277 - FAM SINE Alu -6 169 1 1352 218 30 52 chr11 12850276 12850319 -137933234 - L1ME3 LINE L1 -925 5237 5195 1898 137 70 20 chr11 12850319 12850676 -137932877 - THE1C LTR MaLR 0 375 1 1352 218 30 52 chr11 12850676 12850752 -137932801 - L1ME3 LINE L1 -967 5195 5054 1020 105 105 6 chr11 12850767 12850948 -137932605 + Charlie5 DNA MER1_type 1 199 -2413 511 222 0 0 chr11 12850947 12851055 -137932498 + Charlie5 DNA MER1_type 2352 2459 -153 * 567 200 77 7 chr11 12851081 12851236 -137932317 - L1M4 LINE L1 -743 5403 5238 1232 203 34 0 chr11 12851236 12851502 -137932051 + AluJo SINE Alu 33 307 -5 553 113 99 28 chr11 12851502 12851644 -137931909 + Charlie5 DNA MER1_type 2473 2624 0 1171 245 70 45 chr11 12851648 12851797 -137931756 - L1M4 LINE L1 -1107 5039 4895 2281 90 0 14 chr11 12851797 12852086 -137931467 + AluSp SINE Alu 1 285 -28 513 0 0 0 chr11 12852086 12852143 -137931410 + (CA)n Simple_repeat Simple_repeat 2 58 0 1171 245 70 45 chr11 12852143 12852478 -137931075 - L1M4 LINE L1 -1250 4896 4542 1747 153 55 15 chr11 12852478 12852551 -137931002 - MER44D DNA MER2_type -1882 609 540 1815 147 50 68 chr11 12852551 12852933 -137930620 - THE1C LTR MaLR 0 375 1 1747 153 55 15 chr11 12852933 12853185 -137930368 - MER44D DNA MER2_type -1951 540 1 361 222 99 19 chr11 12853189 12853351 -137930202 - L1M4 LINE L1 -1607 4539 4365 232 286 12 0 chr11 12853363 12853447 -137930106 - L1ME3 LINE L1 -1588 4558 4474 422 178 147 84 chr11 12853517 12853708 -137929845 - L1ME3A LINE L1 -20 6150 5948 261 294 49 35 chr11 12853721 12853864 -137929689 - L1ME3A LINE L1 -289 5881 5737 4752 212 52 26 chr11 12853901 12855326 -137928227 - L1ME1 LINE L1 -2 6164 4664 1949 147 10 32 chr11 12855326 12855638 -137927915 - AluJo SINE Alu -7 305 1 4752 212 52 26 chr11 12855638 12856440 -137927113 - L1ME1 LINE L1 -1502 4664 3884 1412 204 87 45 chr11 12857960 12858406 -137925147 - MLT1C LTR MaLR -2 465 1 1135 173 27 32 chr11 12858497 12858717 -137924836 + MER20 DNA MER1_type 1 219 0 2262 111 10 0 chr11 12858976 12859273 -137924280 - AluSx SINE Alu -12 300 1 247 345 110 45 chr11 12859438 12859638 -137923915 - L2 LINE L2 -15 3257 3045 950 268 59 13 chr11 12859835 12860141 -137923412 - LTR16B LTR ERVL -4 460 141 2203 99 20 0 chr11 12861380 12861674 -137921879 + AluSq SINE Alu 1 300 -13 1005 141 53 12 chr11 12861674 12861844 -137921709 + AluSg/x SINE Alu 134 310 -2 237 228 0 0 chr11 12862868 12862925 -137920628 - MIR SINE MIR -118 144 88 2258 109 0 3 chr11 12864742 12865046 -137918507 + AluSg SINE Alu 1 303 -7 206 237 0 0 chr11 12867266 12867304 -137916249 + polypyrimidine Low_complexity Low_complexity 2 39 0 1725 144 3 80 chr11 12869234 12869547 -137914006 - AluJb SINE Alu -23 289 1 1707 218 73 18 chr11 12869552 12870080 -137913473 - L1ME3A LINE L1 -8 6162 5582 295 313 80 18 chr11 12870084 12870196 -137913357 - MIR SINE MIR -62 146 28 751 195 133 17 chr11 12870639 12870822 -137912731 - MER5C DNA MER1_type -55 269 50 3965 83 0 12 chr11 12870822 12871339 -137912214 + MER9 LTR ERVK 1 511 0 751 195 133 17 chr11 12871339 12871396 -137912157 - MER5C DNA MER1_type -274 50 1 1258 202 132 60 chr11 12871506 12871977 -137911576 + MER110A LTR ERV1 11 491 0 441 273 60 33 chr11 12872242 12872392 -137911161 + MER5A DNA MER1_type 36 189 0 311 253 13 13 chr11 12872399 12872474 -137911079 - MIR SINE MIR -55 153 79 21 0 0 0 chr11 12872716 12872737 -137910816 + AT_rich Low_complexity Low_complexity 1 21 0 210 91 0 0 chr11 12874080 12874113 -137909440 + (GGGA)n Simple_repeat Simple_repeat 3 35 0 27 62 0 0 chr11 12874471 12874519 -137909034 + GC_rich Low_complexity Low_complexity 1 48 0 24 96 0 0 chr11 12874660 12874733 -137908820 + GC_rich Low_complexity Low_complexity 1 73 0 186 43 0 0 chr11 12875182 12875205 -137908348 + (T)n Simple_repeat Simple_repeat 1 23 0 945 189 87 33 chr11 12875358 12875443 -137908110 - L1MA4 LINE L1 -5 6295 6216 4229 78 5 7 chr11 12875443 12875994 -137907559 - MER41A LTR ERV1 -4 550 1 945 189 87 33 chr11 12875994 12876183 -137907370 - L1MA4 LINE L1 -84 6216 6006 809 282 95 37 chr11 12876669 12876772 -137906781 - L3 LINE CR1 -323 1254 1158 1061 262 84 25 chr11 12876772 12877261 -137906292 - LTR33 LTR ERVL -1 520 3 809 282 95 37 chr11 12877261 12877622 -137905931 - L3 LINE CR1 -419 1158 763 1436 146 75 4 chr11 12878125 12878365 -137905188 - Tigger2 DNA MER2_type -1 2717 2461 4487 139 23 18 chr11 12878410 12879149 -137904404 - Tigger2 DNA MER2_type -1974 744 2 601 284 57 9 chr11 12879300 12879511 -137904042 + MIR SINE MIR 16 236 -26 370 158 0 0 chr11 12880281 12880338 -137903215 - FLAM SINE Alu -8 125 69 * 812 186 18 6 chr11 12880335 12880502 -137903051 - Tigger2 DNA MER2_type -2545 173 5 1291 273 39 57 chr11 12880946 12881665 -137901888 - L2 LINE L2 -1 3312 2610 1891 149 27 0 chr11 12881665 12881960 -137901593 + AluJo SINE Alu 1 303 -9 1291 273 39 57 chr11 12881960 12882171 -137901382 - L2 LINE L2 -703 2610 2397 1180 204 59 65 chr11 12882179 12882517 -137901036 - MER58B DNA MER1_type -2 339 4 424 360 40 26 chr11 12882834 12883137 -137900416 + L2 LINE L2 2818 3124 -148 411 305 31 0 chr11 12883269 12883397 -137900156 + MIR3 SINE MIR 68 199 -9 196 333 0 14 chr11 12883975 12884044 -137899509 + L2 LINE L2 3202 3269 -3 195 42 0 0 chr11 12884165 12884189 -137899364 + (TG)n Simple_repeat Simple_repeat 2 25 0 224 270 70 20 chr11 12885758 12885858 -137897695 - L2 LINE L2 0 3313 3209 201 193 333 0 chr11 12885952 12886009 -137897544 - L2 LINE L2 -17 3296 3221 343 251 31 68 chr11 12886067 12886230 -137897323 - MER103 DNA DNA -3 163 7 2164 128 14 0 chr11 12886798 12887095 -137896458 + AluSx SINE Alu 1 301 -11 394 292 0 17 chr11 12887181 12887301 -137896252 + L1ME LINE L1 5547 5664 -457 906 236 136 30 chr11 12888204 12888569 -137894984 + L2 LINE L2 2287 2708 -606 1788 149 66 0 chr11 12888569 12888857 -137894696 - AluSx SINE Alu -5 307 1 906 236 136 30 chr11 12888857 12888931 -137894622 + L2 LINE L2 2708 2773 -541 398 228 55 39 chr11 12888909 12889036 -137894517 + L2 LINE L2 3182 3310 -3 * 2352 66 3 26 chr11 12889674 12889978 -137893575 + AluY SINE Alu 1 297 -14 420 238 94 44 chr11 12891221 12891635 -137891918 + LTR33A LTR ERVL 1 515 -8 311 260 10 10 chr11 12891705 12891801 -137891752 + MIR SINE MIR 63 158 -104 228 314 58 64 chr11 12893305 12893461 -137890092 + L2 LINE L2 3076 3230 -42 250 254 14 70 chr11 12893883 12894025 -137889528 - MLT1H LTR MaLR -397 152 19 603 291 11 0 chr11 12894129 12894304 -137889249 + MIR SINE MIR 86 262 0 455 278 80 48 chr11 12894816 12895129 -137888424 - L2 LINE L2 -1389 1925 1603 3398 256 51 32 chr11 12895263 12896661 -137886892 - L2 LINE L2 -4 3309 1877 633 227 33 0 chr11 12897228 12897378 -137886175 + MIR SINE MIR 108 262 0 298 288 63 9 chr11 12897574 12897685 -137885868 + MER5A DNA MER1_type 4 120 -69 247 339 126 30 chr11 12897696 12897926 -137885627 - L2 LINE L2 -22 3291 3040 915 240 155 63 chr11 12897949 12898440 -137885113 - MLT1H LTR MaLR -13 536 1 217 329 116 5 chr11 12898440 12898656 -137884897 - L2 LINE L2 -228 3044 2805 3650 126 55 7 chr11 12898693 12899313 -137884240 - Tigger3(Golem) DNA MER2_type 0 3029 2380 922 229 14 9 chr11 12899304 12899514 -137884039 - Tigger3(Golem) DNA MER2_type -2818 211 1 * 205 271 59 59 chr11 12899527 12899645 -137883908 - L2 LINE L2 -575 2739 2622 1164 269 142 40 chr11 12899678 12900352 -137883201 - L2 LINE L2 -801 2513 1771 235 182 0 0 chr11 12900415 12900459 -137883094 - MIR SINE MIR -84 124 81 450 284 0 14 chr11 12900484 12900625 -137882928 - MLT1K LTR MaLR -5 583 445 1879 166 17 64 chr11 12901341 12901750 -137881803 - MLT1B LTR MaLR 0 390 1 180 307 173 31 chr11 12902567 12902694 -137880859 - MIR SINE MIR -1 261 117 993 203 22 0 chr11 12904310 12904552 -137879001 + L1MB3 LINE L1 5652 5902 -269 592 148 12 86 chr11 12904556 12904718 -137878835 + L1MB3 LINE L1 6034 6183 0 184 297 54 68 chr11 12904838 12904986 -137878567 + MER5A DNA MER1_type 22 167 -22 * 331 288 22 29 chr11 12904872 12905011 -137878542 - MER5A DNA MER1_type -44 145 8 3966 120 14 72 chr11 12905864 12906598 -137876955 - LTR8 LTR ERV1 0 691 1 294 277 0 24 chr11 12907376 12907459 -137876094 + (TATG)n Simple_repeat Simple_repeat 3 83 0 1765 145 38 21 chr11 12907553 12907842 -137875711 + AluJb SINE Alu 2 295 -17 219 346 0 58 chr11 12908363 12908467 -137875086 - MIR3 SINE MIR 0 208 111 411 155 0 0 chr11 12908541 12908625 -137874928 + (CA)n Simple_repeat Simple_repeat 2 85 0 284 284 55 9 chr11 12909548 12909657 -137873896 + L2 LINE L2 3200 3313 0 2238 144 0 0 chr11 12910521 12910833 -137872720 - AluSx SINE Alu 0 312 1 296 286 125 0 chr11 12910849 12910961 -137872592 - MIR SINE MIR -66 196 71 196 128 21 21 chr11 12912276 12912323 -137871230 + GA-rich Low_complexity Low_complexity 2 48 0 257 277 0 0 chr11 12913151 12913216 -137870337 + CT-rich Low_complexity Low_complexity 4 68 0 302 330 28 0 chr11 12913705 12913814 -137869739 - L2 LINE L2 0 3313 3202 396 0 0 0 chr11 12915762 12915806 -137867747 + (TCC)n Simple_repeat Simple_repeat 3 46 0 2256 141 0 0 chr11 12916100 12916404 -137867149 - AluSx SINE Alu -8 304 1 594 140 9 26 chr11 12916404 12916518 -137867035 - AluJo SINE Alu -2 310 199 945 175 7 0 chr11 12916518 12916661 -137866892 - AluJo SINE Alu -168 144 1 26 50 0 0 chr11 12916968 12917008 -137866545 + AT_rich Low_complexity Low_complexity 1 40 0 1094 287 74 13 chr11 12921739 12922268 -137861285 + L1ME4a LINE L1 5559 6119 -2 591 151 0 59 chr11 12923170 12923289 -137860264 + MER21B LTR ERV1 356 467 -396 965 268 16 0 chr11 12923595 12923841 -137859712 - MIR SINE MIR -11 251 2 1089 162 126 41 chr11 12925932 12926153 -137857400 + L1MB3 LINE L1 5889 6139 -44 2409 105 3 0 chr11 12926153 12926459 -137857094 + AluSp SINE Alu 1 307 -6 1089 162 126 41 chr11 12926459 12926508 -137857045 + L1MB3 LINE L1 6139 6182 -1 257 353 26 0 chr11 12926611 12926727 -137856826 - MIR SINE MIR -60 148 30 295 322 82 13 chr11 12926962 12927144 -137856409 + MIR SINE MIR 41 241 -21 386 242 0 32 chr11 12927169 12927264 -137856289 + MER21B LTR ERV1 1 92 -771 1899 231 58 9 chr11 12927264 12927709 -137855844 + MER21B LTR ERV1 43 509 -354 303 232 0 3 chr11 12927705 12927777 -137855776 - MER21B LTR ERV1 -298 633 497 * 22 0 0 0 chr11 12929766 12929788 -137853765 + AT_rich Low_complexity Low_complexity 1 22 0 356 248 73 0 chr11 12930094 12930203 -137853350 - MER5C DNA MER1_type 0 324 208 201 244 0 0 chr11 12930269 12930314 -137853239 - MER5C DNA MER1_type -279 45 1 259 327 9 0 chr11 12930765 12930851 -137852702 + MIR SINE MIR 86 151 -57 993 62 0 0 chr11 12930926 12931055 -137852498 + L1MA1 LINE L1 6174 6302 0 310 276 123 18 chr11 12931949 12932112 -137851441 - MIR SINE MIR -33 229 50 412 329 27 7 chr11 12932220 12932366 -137851187 - MIR SINE MIR -44 218 70 278 53 0 0 chr11 12933823 12933861 -137849692 - MIR SINE MIR -135 127 90 478 268 43 70 chr11 12934277 12934576 -137848977 + L2 LINE L2 3017 3307 -6 936 168 0 37 chr11 12934578 12934739 -137848814 + FRAM SINE Alu 8 162 -14 217 250 92 0 chr11 12935625 12935701 -137847852 - MIR SINE MIR -67 141 59 199 310 216 9 chr11 12936368 12936484 -137847069 + L2 LINE L2 2647 2786 -528 254 286 14 0 chr11 12936947 12937017 -137846536 + L2 LINE L2 3200 3270 -2 219 330 0 10 chr11 12939264 12939364 -137844189 + MER5A DNA MER1_type 13 111 -78 560 203 35 35 chr11 12939371 12939514 -137844039 - MER5B DNA MER1_type -3 175 33 1072 164 58 10 chr11 12941419 12941626 -137841927 + MER58A DNA MER1_type 8 224 0 447 284 124 0 chr11 12942111 12942280 -137841273 + MIR SINE MIR 29 218 -44 2385 187 69 4 chr11 12942456 12942965 -137840588 - L1MD3 LINE L1 0 7995 7454 437 226 20 0 chr11 12943523 12943625 -137839928 - MER5A DNA MER1_type -77 112 9 217 220 85 0 chr11 12944896 12944955 -137838598 - MIR SINE MIR -149 113 50 448 254 7 63 chr11 12945805 12945947 -137837606 - MER94 DNA DNA 0 134 1 370 340 38 6 chr11 12948028 12948187 -137835366 + MIR SINE MIR 49 212 -50 534 206 0 0 chr11 12948208 12948305 -137835248 - Tigger7 DNA MER2_type 0 2587 2491 392 179 30 0 chr11 12948303 12948370 -137835183 - Tigger7 DNA MER2_type -466 267 199 * 228 250 0 0 chr11 12951238 12951302 -137832251 + L2 LINE L2 2219 2282 -1032 1361 130 77 38 chr11 12951471 12951732 -137831821 - L1MB8 LINE L1 0 6178 5908 1357 144 52 45 chr11 12951775 12951887 -137831666 - L1MB8 LINE L1 -252 5926 5816 2378 94 0 0 chr11 12951887 12952185 -137831368 - AluSx SINE Alu -10 302 5 1357 144 52 45 chr11 12952185 12952363 -137831190 - L1MB8 LINE L1 -362 5816 5634 282 56 0 0 chr11 12952665 12952701 -137830852 + (A)n Simple_repeat Simple_repeat 1 36 0 616 238 23 35 chr11 12952821 12952993 -137830560 - MIR SINE MIR -7 255 86 1312 255 115 15 chr11 12953000 12953392 -137830161 - MLT1J2 LTR MaLR 0 450 20 300 182 30 0 chr11 12953406 12953472 -137830081 - MIR SINE MIR -177 85 18 752 271 19 5 chr11 12953627 12953834 -137829719 - MIR SINE MIR 0 262 53 1057 214 36 62 chr11 12953943 12954310 -137829243 + L1MC5 LINE L1 7555 7913 -48 1187 209 4 59 chr11 12954310 12954430 -137829123 + MER8 DNA MER2_type 1 101 -138 2229 114 3 0 chr11 12954430 12954736 -137828817 + AluSq SINE Alu 1 307 -6 1187 209 4 59 chr11 12954736 12954868 -137828685 + MER8 DNA MER2_type 101 239 0 1057 214 36 62 chr11 12954868 12954888 -137828665 + L1MC5 LINE L1 7913 7932 -29 598 244 114 15 chr11 12955655 12955856 -137827697 - MIR SINE MIR -31 231 11 668 263 83 0 chr11 12956052 12956257 -137827296 + MIR SINE MIR 28 249 -13 260 112 101 0 chr11 12956511 12956600 -137826953 + CT-rich Low_complexity Low_complexity 2 99 0 462 315 79 5 chr11 12956822 12956851 -137826702 - L1MC/D LINE L1 -2031 5777 5752 756 199 0 0 chr11 12956851 12956982 -137826571 - FLAM_A SINE Alu -2 131 1 462 315 79 5 chr11 12956982 12957155 -137826398 - L1MC/D LINE L1 -2056 5752 5560 2338 100 0 0 chr11 12957765 12958065 -137825488 + AluSx SINE Alu 1 300 -12 198 0 0 0 chr11 12958633 12958655 -137824898 + (A)n Simple_repeat Simple_repeat 1 22 0 284 192 0 0 chr11 12958800 12958857 -137824696 - L1MD3 LINE L1 -507 7488 7345 355 143 0 0 chr11 12958958 12959007 -137824546 + Charlie3 DNA MER1_type 2654 2702 -8 * 884 103 63 0 chr11 12959005 12959131 -137824422 - MSTC LTR MaLR -294 134 1 4633 156 46 7 chr11 12959131 12959962 -137823591 + L1MC3 LINE L1 6122 6984 -801 225 108 15 154 chr11 12959976 12960041 -137823512 + L1MD3 LINE L1 6986 7041 -954 2003 130 20 3 chr11 12960173 12960465 -137823088 + AluJb SINE Alu 1 297 -15 397 188 0 0 chr11 12960683 12960752 -137822801 - MIR SINE MIR 0 262 194 310 352 34 17 chr11 12960776 12961009 -137822544 - L2 LINE L2 -471 2843 2607 749 340 53 34 chr11 12961333 12961804 -137821749 + L2 LINE L2 2377 2856 -458 307 316 123 0 chr11 12961775 12961930 -137821623 + L2 LINE L2 3077 3250 -63 * 922 235 5 14 chr11 12961939 12962173 -137821380 + MIR SINE MIR 21 249 -13 188 316 0 0 chr11 12962193 12962250 -137821303 + L2 LINE L2 3255 3311 -2 5964 171 33 13 chr11 12963258 12964882 -137818671 + L1MA9 LINE L1 4653 6312 0 380 305 86 25 chr11 12965539 12965736 -137817817 + MIR SINE MIR 9 217 -45 993 261 149 0 chr11 12965740 12966096 -137817457 - LTR33 LTR ERVL 0 521 113 458 206 48 74 chr11 12966208 12966397 -137817156 + MIR SINE MIR 68 251 -11 604 315 8 25 chr11 12966940 12967100 -137816453 - MIR SINE MIR -18 244 88 2499 85 8 30 chr11 12967100 12967463 -137816090 - THE1A LTR MaLR 0 355 1 604 315 8 25 chr11 12967463 12967543 -137816010 - MIR SINE MIR -174 88 8 688 148 35 0 chr11 12968783 12968898 -137814655 - Tigger1 DNA MER2_type 0 2418 2300 1136 205 5 0 chr11 12968909 12969109 -137814444 + AluJo SINE Alu 15 215 -97 371 293 24 0 chr11 12969214 12969337 -137814216 - L1ME LINE L1 -320 5801 5676 246 263 38 0 chr11 12969418 12969498 -137814055 + MARNA DNA Mariner 480 562 -24 797 158 8 15 chr11 12969546 12969679 -137813874 + FLAM_C SINE Alu 2 133 0 384 319 99 9 chr11 12970691 12970923 -137812630 - MIR SINE MIR -8 254 2 2103 198 90 67 chr11 12971780 12972391 -137811162 + MLT1E2 LTR MaLR 2 626 0 1050 296 69 36 chr11 12972675 12973169 -137810384 - L2 LINE L2 0 3313 2804 2090 107 53 7 chr11 12974257 12974556 -137808997 + AluSq SINE Alu 1 313 0 2097 114 105 12 chr11 12974646 12974714 -137808839 - THE1B LTR MaLR 0 364 304 2406 90 0 3 chr11 12974714 12975014 -137808539 + AluSg SINE Alu 1 299 -11 2097 114 105 12 chr11 12975014 12975278 -137808275 - THE1B LTR MaLR -60 304 1 649 321 50 34 chr11 12975635 12976053 -137807500 - LTR16C LTR ERVL -2 489 65 427 226 12 0 chr11 12976199 12976283 -137807270 - MLT1D LTR MaLR -420 85 1 595 259 196 49 chr11 12976454 12976961 -137806592 + L2 LINE L2 2709 3307 -6 809 153 33 0 chr11 12978525 12978675 -137804878 - MER63 DNA MER1_type -905 156 2 1780 159 24 10 chr11 12978774 12979070 -137804483 + AluJo SINE Alu 1 300 -12 183 366 0 0 chr11 12979440 12979511 -137804042 - MIR SINE MIR -1 261 191 212 244 0 0 chr11 12979692 12979733 -137803820 + polypyrimidine Low_complexity Low_complexity 1 41 0 21 0 0 0 chr11 12980904 12980925 -137802628 + AT_rich Low_complexity Low_complexity 1 21 0 345 231 140 21 chr11 12981134 12981277 -137802276 + L2 LINE L2 2539 2698 -616 447 235 27 91 chr11 12981297 12981518 -137802035 + MIR SINE MIR 21 227 -35 568 244 47 47 chr11 12981625 12981859 -137801694 + L2 LINE L2 2836 3069 -203 915 206 5 0 chr11 12982059 12982248 -137801305 - AluJb SINE Alu 0 312 123 323 271 28 9 chr11 12982563 12982670 -137800883 - MIR SINE MIR -98 164 56 311 365 87 5 chr11 12985309 12985528 -137798025 - L2 LINE L2 -6 3266 3030 2226 177 9 21 chr11 12985908 12986305 -137797248 + L1MC3 LINE L1 7367 7760 -25 515 105 53 0 chr11 12986305 12986381 -137797172 - MADE1 DNA Mariner 0 80 1 2226 177 9 21 chr11 12986381 12986407 -137797146 + L1MC3 LINE L1 7760 7785 0 739 239 81 34 chr11 12986499 12986733 -137796820 - MIR SINE MIR 0 262 18 1289 179 79 4 chr11 12987754 12987994 -137795559 - MLT1D LTR MaLR -1 504 247 1208 288 120 23 chr11 12988183 12988742 -137794811 + MLT1L LTR MaLR 1 613 -2 269 283 54 91 chr11 12988954 12989230 -137794323 - L2 LINE L2 0 3272 3007 2317 212 67 41 chr11 12989782 12990512 -137793041 + L1ME LINE L1 4015 4763 -1383 609 229 62 10 chr11 12990497 12990689 -137792864 + L1ME LINE L1 4974 5175 -971 * 597 98 0 0 chr11 12990690 12990772 -137792781 + AluSg1 SINE Alu 2 83 -226 231 283 152 0 chr11 12991492 12991591 -137791962 + MIR SINE MIR 92 205 -57 2438 68 3 0 chr11 12992119 12992411 -137791142 - AluY SINE Alu -17 294 2 2363 92 3 3 chr11 12992418 12992721 -137790832 - AluSc SINE Alu -6 303 1 1442 156 70 12 chr11 12993685 12993941 -137789612 - AluJo SINE Alu -3 309 39 662 278 199 19 chr11 12994387 12994815 -137788738 - LTR33 LTR ERVL 0 521 17 294 314 75 17 chr11 12995390 12995629 -137787924 + L1ME LINE L1 5414 5666 -500 301 264 96 16 chr11 12996993 12997118 -137786435 + MIR SINE MIR 109 243 -19 252 0 0 0 chr11 12998231 12998259 -137785294 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 1725 133 17 20 chr11 12998262 12998563 -137784990 - AluSx SINE Alu -11 301 2 1214 141 8 73 chr11 12998737 12998971 -137784582 + MER20 DNA MER1_type 1 219 0 525 180 71 156 chr11 12999058 12999271 -137784282 - MIR SINE MIR -7 255 57 300 340 19 9 chr11 12999321 12999427 -137784126 - MIR SINE MIR -50 212 106 216 325 33 50 chr11 12999463 12999583 -137783970 + L2 LINE L2 3134 3251 -21 1863 160 44 58 chr11 12999627 13000170 -137783383 - MLT2A2 LTR ERVL 0 554 1 584 226 109 105 chr11 13002526 13002765 -137780788 - MIR SINE MIR -2 260 21 458 267 42 8 chr11 13002915 13003035 -137780518 - L2 LINE L2 -1 3312 3189 271 157 39 0 chr11 13003375 13003426 -137780127 - MIR SINE MIR -92 170 118 1249 181 91 15 chr11 13003746 13004011 -137779542 - AluJo SINE Alu -14 298 14 241 272 111 0 chr11 13005199 13005280 -137778273 + MIR SINE MIR 32 121 -141 312 209 93 0 chr11 13005560 13005646 -137777907 - MER117 DNA MER1_type 0 197 104 261 266 56 18 chr11 13005950 13006073 -137777480 - MIR SINE MIR -51 157 33 314 272 99 91 chr11 13006546 13006888 -137776665 + LTR16A LTR ERVL 91 435 -15 247 215 114 13 chr11 13006985 13007064 -137776489 - MIR SINE MIR -92 116 30 572 257 37 37 chr11 13007113 13007300 -137776253 - MIR SINE MIR -56 206 20 1829 186 136 35 chr11 13007928 13008391 -137775162 + MER63 DNA MER1_type 548 1057 -4 206 81 27 0 chr11 13011464 13011501 -137772052 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 199 196 0 43 chr11 13011608 13011654 -137771899 - L3 LINE CR1 -2 1575 1532 292 300 119 31 chr11 13013652 13013760 -137769793 + MIR SINE MIR 13 141 -121 2047 100 0 23 chr11 13013760 13014097 -137769456 - AluY SINE Alu 0 311 1 292 300 119 31 chr11 13014097 13014148 -137769405 + MIR SINE MIR 141 186 -76 1507 79 5 5 chr11 13014539 13014741 -137768812 - AluY SINE Alu -109 202 1 1546 178 4 0 chr11 13015105 13015374 -137768179 - AluJo SINE Alu -37 275 6 387 259 80 18 chr11 13015541 13015653 -137767900 + L2 LINE L2 3149 3267 -5 964 243 162 65 chr11 13015792 13016303 -137767250 + MLT1L LTR MaLR 6 566 -49 378 237 134 0 chr11 13016376 13016473 -137767080 + L3 LINE CR1 1467 1576 -1 509 216 88 14 chr11 13016563 13016711 -137766842 + MIR SINE MIR 34 192 -70 198 281 124 51 chr11 13017291 13017449 -137766104 - MIR SINE MIR -55 207 23 2254 191 62 48 chr11 13018970 13019514 -137764039 - MLT2B3 LTR ERVL -2 552 1 1950 132 7 0 chr11 13019644 13019940 -137763613 - AluSx SINE Alu -14 298 1 226 266 215 27 chr11 13019973 13020119 -137763434 - MIR3 SINE MIR -77 185 13 403 289 20 60 chr11 13020651 13020800 -137762753 - MIR SINE MIR -73 189 47 1300 244 124 10 chr11 13021145 13021563 -137761990 + LTR33 LTR ERVL 14 479 -42 239 302 0 0 chr11 13021607 13021670 -137761883 - MIR SINE MIR -102 106 44 428 81 203 0 chr11 13022821 13022895 -137760658 + L1PA12 LINE L1 5863 5951 -217 753 216 105 0 chr11 13022908 13023070 -137760483 + MER3 DNA MER1_type 29 207 -2 1553 103 36 9 chr11 13023366 13023590 -137759963 + MER30 DNA MER1_type 1 230 0 514 261 38 13 chr11 13024264 13024421 -137759132 - MIR3 SINE MIR 0 208 48 265 351 92 17 chr11 13025475 13025649 -137757904 - MIR SINE MIR -24 238 52 762 148 0 22 chr11 13025810 13025945 -137757608 + AluSq/x SINE Alu 16 147 -165 574 139 178 0 chr11 13025936 13026037 -137757516 + AluSx SINE Alu 51 169 -143 * 1131 120 80 0 chr11 13026038 13026213 -137757340 + AluSg/x SINE Alu 108 296 -14 454 330 17 0 chr11 13026648 13026766 -137756787 + L2 LINE L2 3137 3256 -16 926 161 87 0 chr11 13027593 13027754 -137755799 + FAM SINE Alu 1 175 0 624 253 147 13 chr11 13028117 13028342 -137755211 + L1ME1 LINE L1 5864 6118 -48 2133 112 3 0 chr11 13028345 13028640 -137754913 - AluSx SINE Alu -16 296 1 691 219 0 0 chr11 13028847 13028975 -137754578 + FLAM_A SINE Alu 1 128 -5 2159 132 0 0 chr11 13029721 13030025 -137753528 + AluSx SINE Alu 1 304 -8 2282 248 69 23 chr11 13030417 13031071 -137752482 - MER21B LTR ERV1 -57 806 123 287 292 29 7 chr11 13031496 13031633 -137751920 - MER117 DNA MER1_type -49 148 9 520 211 41 14 chr11 13032307 13032454 -137751099 - HsTC2 DNA Tc2 -18 1880 1730 701 231 59 6 chr11 13032457 13032626 -137750927 - HsTC2 DNA Tc2 -1719 179 2 187 314 69 49 chr11 13033574 13033676 -137749877 - MIR SINE MIR -139 123 20 29 47 0 0 chr11 13033792 13033835 -137749718 + AT_rich Low_complexity Low_complexity 1 43 0 22 70 0 0 chr11 13033974 13034017 -137749536 + AT_rich Low_complexity Low_complexity 1 43 0 1931 113 10 10 chr11 13034873 13035165 -137748388 - AluSx SINE Alu -20 292 1 2120 113 10 0 chr11 13035401 13035701 -137747852 - AluSx SINE Alu -9 303 1 229 251 82 82 chr11 13035793 13036000 -137747553 - L1MC/D LINE L1 -1991 5817 5611 532 286 39 0 chr11 13036348 13036502 -137747051 - MIR SINE MIR -5 257 98 280 82 82 20 chr11 13036499 13036548 -137747005 + L2 LINE L2 3190 3241 -72 * 764 243 127 64 chr11 13036548 13037004 -137746549 - L1ME4a LINE L1 -101 6020 5536 2209 106 0 3 chr11 13037337 13037649 -137745904 + AluSx SINE Alu 1 311 -1 1929 132 7 0 chr11 13037656 13037952 -137745601 + AluSx SINE Alu 1 298 -14 377 241 8 0 chr11 13038035 13038168 -137745385 + (TA)n Simple_repeat Simple_repeat 1 134 0 352 256 12 109 chr11 13039550 13039732 -137743821 - MIR SINE MIR -61 147 18 1018 143 0 12 chr11 13040301 13040462 -137743091 + FRAM SINE Alu 1 159 -17 2050 165 104 20 chr11 13040547 13040940 -137742613 - MSTB LTR MaLR 0 426 1 204 111 0 0 chr11 13041482 13041518 -137742035 + (TG)n Simple_repeat Simple_repeat 2 37 0 1449 164 0 44 chr11 13042624 13042899 -137740654 + L1MC1 LINE L1 6066 6328 -5 180 288 14 27 chr11 13044301 13044374 -137739179 + L2 LINE L2 3002 3073 -240 453 221 96 0 chr11 13044407 13044511 -137739042 + MER94 DNA DNA 2 115 -19 282 287 56 28 chr11 13044531 13044639 -137738914 + L2 LINE L2 3141 3251 -21 255 125 0 0 chr11 13044679 13044719 -137738834 + (TGGA)n Simple_repeat Simple_repeat 1 40 0 258 56 0 0 chr11 13044814 13044850 -137738703 + (A)n Simple_repeat Simple_repeat 1 36 0 23 33 0 0 chr11 13045789 13045819 -137737734 + AT_rich Low_complexity Low_complexity 1 30 0 324 252 104 9 chr11 13046016 13046131 -137737422 + MIR SINE MIR 8 133 -129 2103 151 0 3 chr11 13046576 13046881 -137736672 - AluJb SINE Alu -8 304 1 1539 202 76 16 chr11 13047090 13047471 -137736082 + L1MC3 LINE L1 6698 7101 -684 292 224 71 24 chr11 13047476 13047561 -137735992 + MLT1F1 LTR MaLR 45 133 -434 1590 195 117 21 chr11 13047579 13048014 -137735539 + L1MC3 LINE L1 7308 7784 -1 2356 107 3 0 chr11 13048019 13048328 -137735225 + AluSp SINE Alu 1 310 -3 2172 142 0 0 chr11 13048331 13048640 -137734913 + AluSx SINE Alu 1 309 -3 702 254 83 0 chr11 13049191 13049384 -137734169 - MER3 DNA MER1_type 0 209 1 22 35 0 0 chr11 13049492 13049521 -137734032 + AT_rich Low_complexity Low_complexity 1 29 0 1901 265 70 80 chr11 13050022 13050810 -137732743 + L1MEd LINE L1 3 797 -5513 863 154 0 22 chr11 13050810 13050946 -137732607 + FLAM_C SINE Alu 1 133 0 1901 265 70 80 chr11 13050946 13051702 -137731851 + L1MEd LINE L1 797 1559 -4751 2461 81 0 0 chr11 13051702 13052000 -137731553 + AluY SINE Alu 1 298 -13 2125 125 26 3 chr11 13052009 13052312 -137731241 + AluSx SINE Alu 1 310 -2 1901 265 70 80 chr11 13052312 13052408 -137731145 + L1MEd LINE L1 1567 1657 -4653 323 302 70 51 chr11 13052880 13052934 -137730619 + L1MEd LINE L1 2172 2223 -3906 1829 159 0 20 chr11 13052934 13053236 -137730317 - AluJo SINE Alu -16 296 1 323 302 70 51 chr11 13053236 13053552 -137730001 + L1MEd LINE L1 2223 2549 -3580 280 254 162 51 chr11 13053553 13053750 -137729803 + L1MEd LINE L1 2571 2789 -3340 215 59 0 29 chr11 13055937 13055971 -137727582 + (GGAA)n Simple_repeat Simple_repeat 4 36 0 271 254 0 18 chr11 13056027 13056141 -137727412 + GA-rich Low_complexity Low_complexity 3 114 0 714 264 138 20 chr11 13056483 13056933 -137726620 + L1ME4a LINE L1 5617 6119 -2 237 268 20 22 chr11 13057962 13058074 -137725479 + MIR SINE MIR 33 142 -66 626 253 30 0 chr11 13058183 13058349 -137725204 - MIR SINE MIR -2 260 90 3998 158 27 4 chr11 13058450 13059151 -137724402 - L1MB2 LINE L1 -7 6164 5448 1034 242 25 0 chr11 13059990 13060230 -137723323 - MIR SINE MIR 0 262 17 27 81 0 0 chr11 13061483 13061545 -137722008 + AT_rich Low_complexity Low_complexity 1 62 0 2158 120 7 0 chr11 13061566 13061874 -137721679 - AluSx SINE Alu -2 310 1 1492 167 14 44 chr11 13061903 13062178 -137721375 - AluJb SINE Alu -12 300 34 239 239 106 14 chr11 13062292 13062434 -137721119 - L1MB2 LINE L1 -1089 5057 4903 815 182 32 82 chr11 13063166 13063386 -137720167 - MER3 DNA MER1_type 0 209 1 1023 234 87 18 chr11 13064621 13064907 -137718646 - MLT1D LTR MaLR -195 310 5 192 321 0 0 chr11 13065980 13066033 -137717520 + L2 LINE L2 3247 3299 -14 981 171 25 10 chr11 13066650 13066849 -137716704 - MIR SINE MIR -56 206 5 255 148 19 0 chr11 13067195 13067249 -137716304 - L1ME4a LINE L1 0 6121 6067 294 284 153 11 chr11 13067322 13067505 -137716048 - L1ME4a LINE L1 -188 5933 5725 1766 155 86 10 chr11 13067649 13067939 -137715614 - AluJb SINE Alu 0 312 1 256 303 70 14 chr11 13068089 13068231 -137715322 - LTR16C LTR ERVL -66 425 276 204 222 0 0 chr11 13069023 13069059 -137714494 - L2 LINE L2 -23 3290 3255 278 226 200 26 chr11 13069298 13069413 -137714140 + L2 LINE L2 3138 3272 0 246 261 49 63 chr11 13070257 13070399 -137713154 - L2 LINE L2 -157 3115 2976 220 320 55 23 chr11 13070745 13070873 -137712680 + MIR SINE MIR 125 256 -6 1972 174 166 76 chr11 13071348 13072070 -137711483 + L1MC5 LINE L1 6688 7474 -487 671 191 93 118 chr11 13072074 13072473 -137711080 + L1MC5 LINE L1 7525 7913 -48 486 242 67 19 chr11 13073580 13073785 -137709768 - L1PA8A LINE L1 -630 5501 5291 253 302 47 33 chr11 13073959 13074157 -137709396 - L1M4 LINE L1 -991 5155 4950 2611 194 115 14 chr11 13074157 13074750 -137708803 - MER82 DNA MER2_type 0 653 1 253 302 47 33 chr11 13074750 13074826 -137708727 - L1M4 LINE L1 -1196 4950 4877 1473 155 41 4 chr11 13074845 13075090 -137708463 + AluJo SINE Alu 47 300 -12 354 309 95 8 chr11 13075092 13075335 -137708218 - L1M4 LINE L1 -1408 4738 4475 692 233 88 33 chr11 13075626 13075866 -137707687 - MIR SINE MIR -8 254 2 5040 161 28 4 chr11 13075898 13076742 -137706811 + MER6 DNA MER2_type 1 865 0 306 311 59 22 chr11 13077852 13078122 -137705431 + L1ME LINE L1 5290 5569 -593 646 266 57 9 chr11 13078189 13078418 -137705135 + MIR SINE MIR 8 247 -15 282 265 15 0 chr11 13078600 13078668 -137704885 - L2 LINE L2 -20 3293 3225 268 250 0 0 chr11 13078843 13078895 -137704658 + HsTC2 DNA Tc2 34 85 -1813 238 186 0 0 chr11 13078871 13078914 -137704639 + HsTC2 DNA Tc2 1853 1895 -3 * 245 271 14 14 chr11 13079234 13079304 -137704249 - MLT1K LTR MaLR 0 588 519 255 260 47 55 chr11 13081411 13081538 -137702015 - MARNA DNA Mariner -13 573 448 324 229 0 0 chr11 13081700 13081770 -137701783 - MIR SINE MIR -105 157 88 321 249 139 11 chr11 13082311 13082483 -137701070 - MIR3 SINE MIR -65 143 1 315 224 106 0 chr11 13083851 13083936 -137699617 - L1MC4 LINE L1 -32 8010 7917 441 218 50 0 chr11 13083937 13084038 -137699515 - L1MC4 LINE L1 -190 7852 7747 389 154 0 77 chr11 13084044 13084081 -137699472 + MER116 DNA Mariner 1 31 -49 2308 97 10 3 chr11 13084081 13084391 -137699162 - AluSq SINE Alu -1 312 1 389 154 0 77 chr11 13084391 13084431 -137699122 + MER116 DNA Mariner 31 72 -8 1225 242 81 28 chr11 13084433 13084830 -137698723 - L1MC4 LINE L1 -355 7687 7270 1957 146 0 10 chr11 13085449 13085744 -137697809 - AluJb SINE Alu -20 292 1 777 262 34 42 chr11 13086299 13086562 -137696991 - MIR SINE MIR 0 262 2 1769 157 53 10 chr11 13090272 13090571 -137692982 + AluJb SINE Alu 1 312 0 304 250 141 0 chr11 13090944 13091036 -137692517 + L1ME LINE L1 5465 5569 -2426 1623 177 58 131 chr11 13091170 13091689 -137691864 + MLT1D LTR MaLR 25 505 0 302 233 256 35 chr11 13091694 13091866 -137691687 + L1ME LINE L1 5619 5828 -334 2424 76 20 0 chr11 13092019 13092323 -137691230 - AluSq SINE Alu -3 310 1 29 60 0 0 chr11 13092700 13092750 -137690803 + AT_rich Low_complexity Low_complexity 1 50 0 274 183 83 17 chr11 13093728 13093788 -137689765 - MER91B DNA MER1_type -126 64 1 298 224 106 0 chr11 13093874 13093959 -137689594 - MIR SINE MIR -117 145 52 297 289 150 57 chr11 13094401 13094830 -137688723 - L2 LINE L2 -94 3219 2755 391 275 7 120 chr11 13094831 13094973 -137688580 + MER91C DNA MER1_type 12 137 -3 982 169 10 34 chr11 13095623 13095830 -137687723 + L1PB3 LINE L1 5952 6153 -1 541 252 37 70 chr11 13096096 13096338 -137687215 - L1ME3A LINE L1 -10 6160 5927 333 207 0 0 chr11 13096873 13096960 -137686593 + GA-rich Low_complexity Low_complexity 2 88 0 500 280 48 36 chr11 13097878 13098046 -137685507 - MIR SINE MIR -5 257 88 275 111 111 0 chr11 13098083 13098137 -137685416 - L1ME3 LINE L1 -169 5993 5934 1806 152 93 60 chr11 13103148 13103510 -137680043 - Tigger2a DNA MER2_type -2274 434 54 2009 116 0 3 chr11 13103510 13103818 -137679735 + AluSg SINE Alu 1 307 0 1806 152 93 60 chr11 13103818 13103874 -137679679 - Tigger2a DNA MER2_type -2654 54 1 279 274 0 24 chr11 13205907 13205991 -137577562 - MIR SINE MIR -169 93 12 220 243 100 0 chr11 13206681 13206751 -137576802 - L2 LINE L2 -1 3312 3236 180 0 0 0 chr11 13206818 13206838 -137576715 + (A)n Simple_repeat Simple_repeat 1 20 0 2423 88 0 19 chr11 13207691 13207999 -137575554 + AluSq SINE Alu 1 302 -11 255 209 22 22 chr11 13208029 13208120 -137575433 + CT-rich Low_complexity Low_complexity 2 92 0 933 198 17 17 chr11 13208121 13208298 -137575255 - AluJb SINE Alu -18 294 118 252 326 0 0 chr11 13208923 13209020 -137574533 - MER5B DNA MER1_type 0 178 92 191 291 197 8 chr11 13208962 13209079 -137574474 + MER5A DNA MER1_type 50 188 -1 * 603 296 99 17 chr11 13209258 13209613 -137573940 + L2 LINE L2 2266 2649 -665 187 207 58 81 chr11 13209777 13209864 -137573689 + L2 LINE L2 2897 2981 -291 2017 111 25 0 chr11 13211236 13211541 -137572012 + AluSq SINE Alu 1 312 0 34 0 0 0 chr11 13211690 13211724 -137571829 + AT_rich Low_complexity Low_complexity 1 34 0 430 265 44 0 chr11 13212966 13213102 -137570451 + MIR SINE MIR 56 197 -65 478 298 69 23 chr11 13213197 13213415 -137570138 - MIR SINE MIR -27 235 8 379 161 23 35 chr11 13213475 13213562 -137569991 - L2 LINE L2 -27 3245 3160 1610 107 49 23 chr11 13214004 13214267 -137569286 - L1PA13 LINE L1 -3 6160 5891 3900 165 33 27 chr11 13215085 13216166 -137567387 + L1MD2 LINE L1 4992 5997 -245 612 277 15 15 chr11 13216289 13216491 -137567062 + MIR SINE MIR 42 243 -19 205 170 43 0 chr11 13217123 13217170 -137566383 - L2 LINE L2 -3 3269 3221 4522 218 78 26 chr11 13218001 13218262 -137565291 + L1MB8 LINE L1 4058 4304 -1880 2342 104 0 0 chr11 13218262 13218561 -137564992 - AluSq SINE Alu -11 302 4 4522 218 78 26 chr11 13218561 13219857 -137563696 + L1MB8 LINE L1 4304 5691 -493 710 157 0 0 chr11 13219877 13220023 -137563530 + FLAM_C SINE Alu 29 174 0 272 315 21 72 chr11 13220163 13220592 -137562961 + L1MB8 LINE L1 5679 6085 -93 2093 121 17 3 chr11 13221434 13221723 -137561830 - AluSx SINE Alu -19 293 1 605 211 50 39 chr11 13223487 13223667 -137559886 + MER53 DNA DNA 8 189 0 609 303 84 32 chr11 13225182 13225529 -137558024 - L3 LINE CR1 -467 1110 746 1706 143 110 10 chr11 13226119 13226427 -137557126 + MER7A DNA MER2_type 1 337 -9 1720 154 3 66 chr11 13227099 13227417 -137556136 - AluJb SINE Alu -14 298 1 315 0 0 0 chr11 13227607 13227642 -137555911 + (CA)n Simple_repeat Simple_repeat 2 36 0 2069 133 3 17 chr11 13229259 13229560 -137553993 - AluJb SINE Alu -15 297 1 192 216 0 0 chr11 13231798 13231835 -137551718 + MIR SINE MIR 118 154 -108 198 153 51 17 chr11 13232080 13232139 -137551414 + CT-rich Low_complexity Low_complexity 6 66 0 953 303 125 56 chr11 13234381 13234820 -137548733 + L1M4 LINE L1 2865 3272 -2874 342 0 0 0 chr11 13234820 13234858 -137548695 + (CA)n Simple_repeat Simple_repeat 2 39 0 953 303 125 56 chr11 13234858 13235024 -137548529 + L1M4 LINE L1 3272 3425 -2721 1528 135 39 4 chr11 13235024 13235284 -137548269 + L1MA8 LINE L1 6018 6286 -5 953 303 125 56 chr11 13235284 13235456 -137548097 + L1M4 LINE L1 3425 3584 -2562 1732 159 48 10 chr11 13235456 13235751 -137547802 + AluJb SINE Alu 5 310 -2 953 303 125 56 chr11 13235751 13236120 -137547433 + L1M4 LINE L1 3584 4093 -2053 317 295 106 39 chr11 13236248 13236739 -137546814 + L1M4 LINE L1 4402 4925 -1221 1850 153 7 19 chr11 13236886 13237193 -137546360 + AluJo SINE Alu 1 303 -9 183 42 0 0 chr11 13238473 13238497 -137545056 + (CCA)n Simple_repeat Simple_repeat 3 26 0 182 234 64 0 chr11 13238606 13238653 -137544900 + L2 LINE L2 3004 3053 -219 2451 94 0 0 chr11 13239034 13239341 -137544212 + AluSx SINE Alu 1 307 -5 2167 102 20 20 chr11 13239966 13240270 -137543283 - AluSx SINE Alu -8 304 1 1059 225 96 47 chr11 13240276 13240663 -137542890 - L1MA9 LINE L1 -25 6287 5882 476 248 50 21 chr11 13241140 13241281 -137542272 + MIR SINE MIR 42 186 -76 1996 125 3 3 chr11 13241340 13241628 -137541925 - AluSp SINE Alu -25 288 1 22 0 0 0 chr11 13242309 13242331 -137541222 + AT_rich Low_complexity Low_complexity 1 22 0 2433 84 0 0 chr11 13242963 13243262 -137540291 + AluSx SINE Alu 1 299 -13 799 295 75 87 chr11 13243583 13244346 -137539207 - HsTC2 DNA Tc2 -1025 873 121 2519 80 3 6 chr11 13244346 13244684 -137538869 - L1PA8A LINE L1 -1 6130 5794 799 295 75 87 chr11 13244684 13244804 -137538749 - HsTC2 DNA Tc2 -1777 121 1 368 139 38 6 chr11 13245051 13245126 -137538427 + Alu SINE Alu 235 295 -7 294 200 71 12 chr11 13245486 13245571 -137537982 + MER88 LTR ERVL 79 168 -296 * 1264 268 46 52 chr11 13245498 13245976 -137537577 - MER74B LTR ERVL -74 548 74 313 305 186 11 chr11 13246168 13246345 -137537208 + MIR SINE MIR 20 227 -35 215 330 153 8 chr11 13248746 13248864 -137534689 - MIR SINE MIR -108 154 20 261 246 73 64 chr11 13251748 13251858 -137531695 - MIR SINE MIR -66 142 32 425 235 11 158 chr11 13252292 13252552 -137531001 - MIR SINE MIR -28 234 13 944 262 141 93 chr11 13253159 13253961 -137529592 - HAL1 LINE L1 -68 2439 1600 260 293 80 0 chr11 13254251 13254326 -137529227 + L2 LINE L2 3197 3277 -36 407 269 35 55 chr11 13255338 13255483 -137528070 + MIR3 SINE MIR 3 144 -64 2295 95 3 0 chr11 13255849 13256144 -137527409 - AluSx SINE Alu -16 296 1 264 297 55 47 chr11 13256146 13256274 -137527279 - MIR SINE MIR -16 246 118 304 306 16 25 chr11 13257453 13257522 -137526031 + MER103 DNA DNA 2 71 -95 1511 197 14 21 chr11 13257522 13257811 -137525742 - AluJo SINE Alu -25 287 1 304 306 16 25 chr11 13257811 13257862 -137525691 + MER103 DNA DNA 71 121 -45 237 284 0 30 chr11 13257945 13258012 -137525541 - MIR SINE MIR -70 192 128 516 251 72 6 chr11 13258444 13258611 -137524942 - MER5B DNA MER1_type 0 178 1 281 209 45 0 chr11 13260526 13260593 -137522960 - MIR SINE MIR -14 248 179 1942 152 10 0 chr11 13260985 13261275 -137522278 + AluJb SINE Alu 3 295 -17 870 243 42 11 chr11 13261439 13261628 -137521925 + Charlie1a DNA MER1_type 3 197 -1258 911 193 61 10 chr11 13261698 13261895 -137521658 + Charlie1a DNA MER1_type 553 759 -696 832 174 0 19 chr11 13261895 13262050 -137521503 + Charlie1a DNA MER1_type 879 1030 -425 746 164 106 34 chr11 13262053 13262261 -137521292 + Charlie1a DNA MER1_type 1186 1408 -47 387 86 0 35 chr11 13262398 13262456 -137521097 + Charlie1a DNA MER1_type 1399 1454 -1 276 221 17 0 chr11 13263216 13263295 -137520258 + MLT1D LTR MaLR 421 626 0 21 0 0 0 chr11 13263330 13263351 -137520202 + AT_rich Low_complexity Low_complexity 1 21 0 401 123 0 0 chr11 13263351 13263408 -137520145 - FLAM_A SINE Alu -25 117 61 206 220 0 0 chr11 13264121 13264180 -137519373 + (TA)n Simple_repeat Simple_repeat 2 60 0 1660 228 102 27 chr11 13264421 13264943 -137518610 + L1ME3A LINE L1 5607 6167 -3 573 226 5 35 chr11 13265102 13265300 -137518253 + MER97c DNA MER1_type? 2 230 -664 1721 145 17 47 chr11 13265300 13265597 -137517956 - AluJo SINE Alu -10 302 15 573 226 5 35 chr11 13265597 13265622 -137517931 + MER97c DNA MER1_type? 230 254 -640 619 260 56 20 chr11 13265743 13265939 -137517614 + MER97a DNA MER1_type? 423 625 -269 309 215 165 0 chr11 13265939 13266018 -137517535 + MER97c DNA MER1_type? 999 1090 0 728 181 17 0 chr11 13266330 13266446 -137517107 - FLAM_A SINE Alu -15 118 1 245 298 48 0 chr11 13266645 13266729 -137516824 + L1ME LINE L1 5732 5819 -302 2317 90 7 10 chr11 13267067 13267368 -137516185 + AluSp SINE Alu 2 301 -12 2566 11 0 0 chr11 13267999 13268274 -137515279 - AluYa5 SINE Alu -3 308 34 1839 157 17 0 chr11 13268467 13268761 -137514792 + AluSx SINE Alu 10 308 -4 226 279 38 13 chr11 13268805 13268884 -137514669 + L2 LINE L2 2550 2630 -684 242 356 25 8 chr11 13269264 13269382 -137514171 + L2 LINE L2 3139 3258 -14 776 120 30 30 chr11 13269408 13269541 -137514012 - MSTD LTR MaLR 0 396 264 530 221 15 8 chr11 13269594 13269725 -137513828 - MSTD LTR MaLR -264 132 1 200 135 0 0 chr11 13270185 13270222 -137513331 + L2 LINE L2 3274 3310 -3 1350 142 125 83 chr11 13270975 13271335 -137512218 - THE1C LTR MaLR 0 375 1 189 296 12 37 chr11 13272368 13272449 -137511104 - L2 LINE L2 -1015 2299 2221 198 281 61 12 chr11 13274188 13274270 -137509283 + L2 LINE L2 3026 3111 -161 233 209 47 0 chr11 13274920 13274963 -137508590 + tRNA-Pro-CCT tRNA tRNA 20 64 -11 21 0 0 0 chr11 13276377 13276398 -137507155 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr11 13276749 13276777 -137506776 + AT_rich Low_complexity Low_complexity 1 28 0 324 127 0 0 chr11 13276977 13277032 -137506521 + (CA)n Simple_repeat Simple_repeat 2 56 0 387 0 0 0 chr11 13277453 13277496 -137506057 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 189 0 0 0 chr11 13280107 13280128 -137503425 + (A)n Simple_repeat Simple_repeat 1 21 0 2306 82 4 0 chr11 13280128 13280409 -137503144 - AluSp SINE Alu -31 282 1 291 352 9 9 chr11 13281172 13281280 -137502273 + L2 LINE L2 2989 3096 -176 254 227 61 0 chr11 13281401 13281467 -137502086 + L2 LINE L2 3168 3237 -35 226 274 155 12 chr11 13281813 13281981 -137501572 - L3 LINE CR1 -156 1421 1230 378 234 0 27 chr11 13283269 13283386 -137500167 + MIR SINE MIR 25 136 -72 2156 109 6 16 chr11 13283731 13284044 -137499509 - AluSx SINE Alu -2 310 1 193 294 29 15 chr11 13284668 13284736 -137498817 + MIR SINE MIR 52 120 -142 2101 147 0 0 chr11 13285338 13285624 -137497929 + AluSx SINE Alu 1 286 -26 383 131 82 0 chr11 13285978 13286039 -137497514 - Charlie3 DNA MER1_type 0 2712 2647 2099 142 0 7 chr11 13286381 13286690 -137496863 + AluJb SINE Alu 1 307 -5 236 278 31 31 chr11 13287535 13287642 -137495911 + MIR SINE MIR 1 108 -100 2237 117 0 0 chr11 13287886 13288176 -137495377 - AluSq SINE Alu -23 290 1 180 232 111 20 chr11 13288262 13288361 -137495192 + MIR SINE MIR 127 234 -28 2549 64 3 6 chr11 13289008 13289320 -137494233 + AluY SINE Alu 1 311 0 768 181 0 0 chr11 13289611 13289738 -137493815 + FLAM_A SINE Alu 4 130 -3 723 258 26 5 chr11 13289757 13289947 -137493606 + L2 LINE L2 3116 3309 -4 326 323 84 47 chr11 13290262 13290559 -137492994 + L2 LINE L2 2958 3265 -7 2497 57 0 7 chr11 13290868 13291168 -137492385 + AluY SINE Alu 3 300 -11 330 171 110 0 chr11 13291260 13291342 -137492211 + MIR SINE MIR 81 171 -91 206 338 21 7 chr11 13291584 13291726 -137491827 - L3b LINE CR1 -295 1288 1145 2212 70 63 3 chr11 13292387 13292671 -137490882 - AluSc SINE Alu -8 301 1 559 295 95 17 chr11 13292741 13292982 -137490571 + MIR SINE MIR 3 262 0 26 0 0 0 chr11 13293985 13294011 -137489542 + GC_rich Low_complexity Low_complexity 1 26 0 369 0 0 0 chr11 13294092 13294133 -137489420 + (A)n Simple_repeat Simple_repeat 1 41 0 782 188 0 0 chr11 13294133 13294271 -137489282 + AluSc SINE Alu 119 256 -53 2488 164 14 53 chr11 13294287 13294800 -137488753 + L1MB8 LINE L1 5681 6173 -5 324 0 0 0 chr11 13295244 13295280 -137488273 + (TG)n Simple_repeat Simple_repeat 1 36 0 207 0 0 0 chr11 13295337 13295360 -137488193 + (T)n Simple_repeat Simple_repeat 1 23 0 193 281 0 83 chr11 13295745 13295841 -137487712 - MIR SINE MIR -167 95 8 261 155 84 14 chr11 13297387 13297458 -137486095 - MIR3 SINE MIR -22 186 111 480 252 76 0 chr11 13297598 13297717 -137485836 + MER94 DNA DNA 6 133 -1 521 200 0 0 chr11 13298596 13298691 -137484862 + MER53 DNA DNA 1 95 -94 729 270 242 10 chr11 13298777 13299301 -137484252 - L2 LINE L2 -2 3311 2655 277 105 0 0 chr11 13300072 13300110 -137483443 + U5 snRNA snRNA 1 38 -78 1116 147 0 18 chr11 13300110 13300280 -137483273 - AluSq SINE Alu -13 300 134 2215 90 23 3 chr11 13300280 13300579 -137482974 - AluSx SINE Alu -7 305 1 760 158 0 0 chr11 13301077 13301197 -137482356 - FLAM_C SINE Alu -13 120 1 273 244 84 25 chr11 13301350 13301469 -137482084 + MIR SINE MIR 128 253 -9 26 0 0 0 chr11 13301495 13301521 -137482032 + AT_rich Low_complexity Low_complexity 1 26 0 206 222 63 0 chr11 13302447 13302510 -137481043 + MIR SINE MIR 65 131 -77 1900 166 73 5 chr11 13302838 13303213 -137480340 + L1M4 LINE L1 5332 5714 -464 242 237 0 53 chr11 13304448 13304524 -137479029 + A-rich Low_complexity Low_complexity 5 76 0 208 282 164 9 chr11 13304763 13304873 -137478680 + MIR SINE MIR 82 208 -54 1584 173 16 38 chr11 13304922 13305235 -137478318 + AluJo SINE Alu 1 306 -6 26 0 0 0 chr11 13305269 13305295 -137478258 + AT_rich Low_complexity Low_complexity 1 26 0 328 285 163 31 chr11 13305297 13305616 -137477937 - L1MC/D LINE L1 -2036 5772 5412 1541 239 51 20 chr11 13307135 13307587 -137475966 - MLT1C LTR MaLR 0 467 2 256 296 41 10 chr11 13307610 13307708 -137475845 - MIR SINE MIR -142 120 20 207 170 132 0 chr11 13307714 13307767 -137475786 - MER5A DNA MER1_type -11 178 119 384 190 0 60 chr11 13307781 13307881 -137475672 + MER5A DNA MER1_type 4 97 -92 215 148 19 37 chr11 13307878 13307932 -137475621 - MER5B DNA MER1_type -123 55 3 * 353 260 50 83 chr11 13307949 13308130 -137475423 + MER5B DNA MER1_type 4 178 0 276 196 0 0 chr11 13308592 13308638 -137474915 + Alu SINE Alu 1 46 -256 2158 112 13 10 chr11 13308903 13309207 -137474346 + AluSx SINE Alu 2 306 -6 405 277 77 32 chr11 13309258 13309275 -137474278 - MIR SINE MIR -32 230 215 1829 177 0 13 chr11 13309275 13309585 -137473968 - AluJo SINE Alu -6 306 1 405 277 77 32 chr11 13309585 13309787 -137473766 - MIR SINE MIR -47 215 1 255 281 66 33 chr11 13309967 13310088 -137473465 - L2 LINE L2 -7 3306 3182 763 167 8 0 chr11 13310427 13310559 -137472994 + FLAM_C SINE Alu 1 133 0 265 240 53 40 chr11 13311170 13311245 -137472308 - L2 LINE L2 -44 3228 3153 2198 99 13 7 chr11 13312987 13313289 -137470264 + AluSg1 SINE Alu 1 304 -5 234 0 0 0 chr11 13316156 13316182 -137467371 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 182 250 47 16 chr11 13316380 13316444 -137467109 + MIR SINE MIR 66 131 -131 2651 58 0 0 chr11 13317975 13318283 -137465270 - AluY SINE Alu -3 308 1 180 343 9 29 chr11 13318304 13318409 -137465144 + L2 LINE L2 2623 2725 -589 2190 139 0 0 chr11 13318810 13319120 -137464433 - AluSx SINE Alu -2 310 1 224 341 8 16 chr11 13319462 13319585 -137463968 - MIR3 SINE MIR -2 206 85 2076 102 33 13 chr11 13320152 13320457 -137463096 + AluSq SINE Alu 1 311 -2 465 138 8 41 chr11 13320457 13320580 -137462973 + GA-rich Low_complexity Low_complexity 4 122 0 1122 159 30 52 chr11 13320580 13320812 -137462741 + MLT1B LTR MaLR 164 390 0 24 0 0 0 chr11 13320954 13320978 -137462575 + AT_rich Low_complexity Low_complexity 1 24 0 400 226 0 0 chr11 13321554 13321638 -137461915 + L1MA9 LINE L1 6044 6127 -185 2456 74 0 0 chr11 13321812 13322110 -137461443 - AluY SINE Alu -13 298 1 1585 153 59 7 chr11 13322128 13322416 -137461137 - L1MA7 LINE L1 0 6291 5989 1481 113 132 39 chr11 13322631 13322888 -137460665 + AluSx SINE Alu 3 283 -29 180 0 0 0 chr11 13322888 13322908 -137460645 + (CCAA)n Simple_repeat Simple_repeat 2 21 0 906 162 116 95 chr11 13323353 13323637 -137459916 + AluJo SINE Alu 23 312 0 475 320 82 18 chr11 13323661 13323880 -137459673 - MIR SINE MIR -12 250 18 1207 193 0 19 chr11 13326451 13326664 -137456889 - AluSc SINE Alu -14 295 87 222 208 0 0 chr11 13327457 13327505 -137456048 + (TG)n Simple_repeat Simple_repeat 1 48 0 208 148 37 19 chr11 13327528 13327582 -137455971 + (TA)n Simple_repeat Simple_repeat 1 55 0 388 266 13 65 chr11 13330054 13330208 -137453345 - MIR SINE MIR -33 229 84 210 272 139 44 chr11 13330439 13330619 -137452934 - MIR SINE MIR -46 216 20 181 279 81 23 chr11 13331140 13331226 -137452327 + MIR SINE MIR 36 126 -136 283 273 61 20 chr11 13331255 13331354 -137452199 - L2 LINE L2 -34 3238 3136 236 271 29 0 chr11 13331792 13331862 -137451691 + L2 LINE L2 3242 3313 0 433 325 121 5 chr11 13332340 13332546 -137451007 - MIR SINE MIR -14 248 19 211 348 65 13 chr11 13334570 13334725 -137448828 - MIR SINE MIR -12 250 88 259 346 112 39 chr11 13335209 13335388 -137448165 + L3 LINE CR1 326 517 -1060 209 262 82 0 chr11 13335622 13335683 -137447870 - L2 LINE L2 -33 3280 3215 270 256 165 33 chr11 13335887 13336008 -137447545 + L3 LINE CR1 1345 1481 -96 1006 298 59 15 chr11 13336903 13337500 -137446053 - MER115 DNA AcHobo 0 693 3 676 248 86 22 chr11 13338280 13338502 -137445051 + MIR SINE MIR 25 260 -2 358 221 74 0 chr11 13339695 13339790 -137443763 + MIR SINE MIR 104 205 -57 2258 119 0 0 chr11 13340850 13341153 -137442400 - AluSg SINE Alu -3 307 5 225 232 0 36 chr11 13342273 13342329 -137441224 + MLT1K LTR MaLR 490 543 -45 213 39 0 0 chr11 13342724 13342750 -137440803 + (TGGGGG)n Simple_repeat Simple_repeat 4 29 0 184 250 45 0 chr11 13344492 13344536 -137439017 + MIR SINE MIR 79 124 -138 580 75 0 38 chr11 13345656 13345762 -137437791 + (TG)n Simple_repeat Simple_repeat 1 102 0 276 200 0 0 chr11 13346118 13346178 -137437375 + CT-rich Low_complexity Low_complexity 1 60 0 236 364 53 23 chr11 13347591 13347723 -137435830 - L2 LINE L2 -19 3253 3118 2489 57 3 10 chr11 13350328 13350629 -137432924 - AluY SINE Alu -12 299 1 184 365 0 0 chr11 13352155 13352218 -137431335 + MIR SINE MIR 32 94 -114 210 257 9 73 chr11 13352723 13352832 -137430721 + CT-rich Low_complexity Low_complexity 2 103 0 2480 64 3 0 chr11 13352834 13353131 -137430422 - AluY SINE Alu -4 307 10 21 0 0 0 chr11 13353834 13353855 -137429698 + AT_rich Low_complexity Low_complexity 1 21 0 291 203 43 0 chr11 13354143 13354212 -137429341 + MIR SINE MIR 71 142 -120 2996 212 130 42 chr11 13356056 13357020 -137426533 + L1M4 LINE L1 4067 5114 -1032 564 296 28 24 chr11 13357434 13357647 -137425906 + MIR SINE MIR 23 236 -26 354 237 32 121 chr11 13358289 13358479 -137425074 - MIR SINE MIR -62 200 28 255 172 195 35 chr11 13460810 13460897 -137322656 - MER103 DNA DNA -50 116 16 1336 249 23 20 chr11 13461070 13461412 -137322141 + L1MDa LINE L1 3 345 -6195 728 235 10 73 chr11 13461415 13461619 -137321934 - AluJb SINE Alu -13 299 109 1791 165 0 14 chr11 13461876 13462173 -137321380 + AluJb SINE Alu 3 295 -17 24 0 0 0 chr11 13462173 13462197 -137321356 + AT_rich Low_complexity Low_complexity 1 24 0 294 236 104 42 chr11 13462339 13462483 -137321070 - L1ME4a LINE L1 -1 6120 5968 2063 34 0 0 chr11 13462881 13463115 -137320438 - L1PA2 LINE L1 0 6155 5922 1928 154 0 3 chr11 13463470 13463768 -137319785 - AluSx SINE Alu -15 297 1 329 289 8 31 chr11 13463970 13464098 -137319455 + (TATATG)n Simple_repeat Simple_repeat 2 126 0 421 326 168 24 chr11 13465202 13466113 -137317440 - L2 LINE L2 -212 3060 1992 440 261 24 101 chr11 13466357 13466564 -137316989 + MIR SINE MIR 48 238 -24 511 251 30 36 chr11 13466588 13466755 -137316798 - MIR SINE MIR -37 225 60 321 197 53 0 chr11 13466765 13466841 -137316712 + MIR SINE MIR 126 205 -57 2118 90 3 3 chr11 13466943 13467253 -137316300 + L1P LINE L1 3126 3435 -2711 1748 278 66 30 chr11 13467394 13468216 -137315337 - L2 LINE L2 -90 3223 2375 1164 286 35 21 chr11 13468269 13468643 -137314910 + LTR16C LTR ERVL 24 402 -89 426 268 95 12 chr11 13468882 13469050 -137314503 - LTR16C LTR ERVL -3 488 307 2251 85 3 3 chr11 13469109 13469391 -137314162 + AluSg SINE Alu 6 287 -23 325 220 110 10 chr11 13469405 13469505 -137314048 + L1MC4 LINE L1 7933 8042 0 2005 143 0 0 chr11 13469519 13469799 -137313754 + AluSx SINE Alu 1 280 -32 351 0 0 0 chr11 13469801 13469840 -137313713 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 956 271 43 15 chr11 13469850 13470178 -137313375 + L1PBa LINE L1 6 342 -6521 3818 144 14 29 chr11 13470318 13471130 -137312423 - L1MA9 LINE L1 -387 5925 5126 375 216 129 9 chr11 13471385 13471501 -137312052 - MIR SINE MIR -12 250 121 182 274 168 0 chr11 13471704 13471817 -137311736 + L2 LINE L2 3136 3267 -5 254 301 163 24 chr11 13472462 13472585 -137310968 + MIR SINE MIR 13 152 -110 917 197 77 19 chr11 13472807 13473015 -137310538 + MIR SINE MIR 2 221 -41 481 284 105 12 chr11 13474273 13474435 -137309118 + MIR SINE MIR 3 179 -83 627 262 62 8 chr11 13475410 13475600 -137307953 + MIR SINE MIR 38 238 -24 23 0 0 0 chr11 13475869 13475892 -137307661 + AT_rich Low_complexity Low_complexity 1 23 0 344 305 123 32 chr11 13476037 13476224 -137307329 + MIR SINE MIR 53 256 -6 8624 129 23 3 chr11 13476252 13477522 -137306031 - HSMAR2 DNA Mariner -3 1299 5 483 268 16 0 chr11 13477639 13477676 -137305877 - L1MA10 LINE L1 -44 6290 6254 257 319 45 38 chr11 13477676 13477833 -137305720 - L1MD2 LINE L1 -246 6113 5956 508 192 39 0 chr11 13477842 13477946 -137305607 - L1M4 LINE L1 -835 5311 5204 * 2231 243 88 26 chr11 13477945 13478093 -137305460 - L1MC3 LINE L1 -380 7405 7268 2022 209 8 3 chr11 13478093 13478456 -137305097 - MLT1A1 LTR MaLR 0 365 1 2231 243 88 26 chr11 13478456 13478658 -137304895 - L1MC3 LINE L1 -517 7268 7080 189 107 0 0 chr11 13478658 13478686 -137304867 + (TTTA)n Simple_repeat Simple_repeat 4 31 0 2231 243 88 26 chr11 13478686 13479026 -137304527 - L1MC3 LINE L1 -705 7080 6671 268 188 13 0 chr11 13479112 13479171 -137304382 + MER5A DNA MER1_type 2 61 -128 418 313 28 17 chr11 13479844 13480038 -137303515 + MER5B DNA MER1_type 1 178 0 1758 172 3 27 chr11 13481570 13481867 -137301686 - AluJo SINE Alu -22 290 1 1628 197 0 0 chr11 13482520 13482804 -137300749 + AluJb SINE Alu 21 304 -8 1470 157 92 29 chr11 13484112 13484393 -137299160 + AluJb SINE Alu 5 303 -9 242 247 32 54 chr11 13484429 13484522 -137299031 - L1M4 LINE L1 -1146 5000 4910 303 180 0 0 chr11 13484574 13484624 -137298929 + (TTAGGG)n Simple_repeat Simple_repeat 3 52 0 248 307 68 28 chr11 13484647 13484823 -137298730 - L1M4 LINE L1 -1439 4707 4525 1963 174 68 3 chr11 13484907 13485246 -137298307 - MLT1A1 LTR MaLR -4 361 1 287 212 158 6 chr11 13485410 13485575 -137297978 - L1ME LINE L1 -594 5576 5386 228 323 53 41 chr11 13485842 13485964 -137297589 - MIR SINE MIR -68 140 43 246 176 0 88 chr11 13486393 13486484 -137297069 + CT-rich Low_complexity Low_complexity 5 87 0 237 162 0 0 chr11 13488220 13488257 -137295296 - LTR16C LTR ERVL -2 489 453 602 281 90 34 chr11 13488316 13488583 -137294970 - LTR16C LTR ERVL -167 324 43 562 198 60 126 chr11 13491078 13491260 -137292293 + MER5B DNA MER1_type 3 172 -6 552 152 107 9 chr11 13491398 13491510 -137292043 - L2 LINE L2 0 3313 3191 303 248 0 0 chr11 13491880 13491985 -137291568 + (ATG)n Simple_repeat Simple_repeat 2 106 0 23048 69 12 2 chr11 13494295 13497991 -137285562 + L1PA7 LINE L1 2447 6148 -6 1218 204 63 3 chr11 13498000 13498303 -137285250 - MER33 DNA MER1_type -14 310 1 687 277 69 36 chr11 13498316 13498619 -137284934 - L1ME LINE L1 -330 5791 5479 542 268 102 77 chr11 13498638 13498699 -137284854 + HAL1 LINE L1 790 848 -1659 1844 276 33 14 chr11 13498699 13499210 -137284343 + LTR33 LTR ERVL 1 521 0 542 268 102 77 chr11 13499210 13499869 -137283684 + HAL1 LINE L1 848 1534 -973 348 375 46 18 chr11 13499870 13500275 -137283278 + L2 LINE L2 2652 3074 -198 193 320 195 8 chr11 13500323 13500451 -137283102 - L2 LINE L2 -15 3257 3106 351 65 0 0 chr11 13501105 13501151 -137282402 + (T)n Simple_repeat Simple_repeat 1 46 0 4604 223 34 20 chr11 13501264 13501894 -137281659 + L1M4 LINE L1 3797 4453 -1693 2011 145 0 10 chr11 13501894 13502205 -137281348 + AluSq SINE Alu 1 308 -5 4604 223 34 20 chr11 13502205 13502744 -137280809 + L1M4 LINE L1 4453 4983 -1163 569 269 20 30 chr11 13502934 13503131 -137280422 + MIR SINE MIR 43 237 -25 220 68 23 23 chr11 13504048 13504092 -137279461 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 1129 103 0 0 chr11 13504092 13504238 -137279315 - AluSg/x SINE Alu -32 280 135 306 87 0 0 chr11 13505790 13505836 -137277717 + (GA)n Simple_repeat Simple_repeat 1 46 0 3100 163 11 15 chr11 13506345 13506878 -137276675 + LTR26B LTR ERV1 1 531 0 204 40 0 0 chr11 13507023 13507048 -137276505 + (CAGT)n Simple_repeat Simple_repeat 4 28 0 345 330 0 0 chr11 13507051 13507154 -137276399 - L2 LINE L2 -10 3303 3201 488 348 48 48 chr11 13507205 13507734 -137275819 - L2 LINE L2 -267 3005 2467 965 188 6 11 chr11 13507799 13507975 -137275578 - MLT1C LTR MaLR 0 467 293 206 335 5 61 chr11 13508029 13508226 -137275327 - L2 LINE L2 -912 2402 2217 2882 3 0 0 chr11 13509812 13510114 -137273439 - AluYa5 SINE Alu -7 304 3 2235 119 0 0 chr11 13510699 13510994 -137272559 - AluSq SINE Alu -18 295 1 1531 165 98 32 chr11 13511487 13511694 -137271859 - MLT1C LTR MaLR -10 616 424 180 97 0 0 chr11 13511694 13511725 -137271828 + (TG)n Simple_repeat Simple_repeat 2 32 0 1531 165 98 32 chr11 13511725 13511903 -137271650 - MLT1C LTR MaLR -202 424 2 277 114 0 23 chr11 13511999 13512043 -137271510 + MER39 LTR ERV1 1 43 -664 * 974 164 0 6 chr11 13512035 13512194 -137271359 + MER39 LTR ERV1 549 706 -1 9989 102 5 6 chr11 13512943 13514341 -137269212 - Tigger1 DNA MER2_type -320 2098 703 371 155 0 0 chr11 13514625 13514683 -137268870 - L1MA9 LINE L1 -5 6307 6250 331 244 24 41 chr11 13514924 13515047 -137268506 + MIR3 SINE MIR 36 156 -52 281 272 116 10 chr11 13515888 13516080 -137267473 + MIR SINE MIR 11 225 -37 203 184 0 0 chr11 13516108 13516146 -137267407 + (TTA)n Simple_repeat Simple_repeat 2 39 0 1225 177 20 19 chr11 13516281 13517216 -137266337 - L1MB8 LINE L1 0 6178 5092 328 239 15 30 chr11 13517703 13517837 -137265716 + L2 LINE L2 2930 3061 -211 453 211 112 33 chr11 13519062 13519214 -137264339 - L2 LINE L2 -42 3271 3108 201 299 117 22 chr11 13519360 13519497 -137264056 - L2 LINE L2 -224 3089 2940 183 273 0 0 chr11 13520190 13520245 -137263308 + L2 LINE L2 3210 3264 -8 591 241 143 16 chr11 13520367 13520612 -137262941 - L1ME4a LINE L1 -26 6095 5820 318 318 128 10 chr11 13520635 13520924 -137262629 - L2 LINE L2 -629 2685 2363 740 255 75 36 chr11 13521202 13521480 -137262073 - L2 LINE L2 -6 3307 3019 319 252 86 60 chr11 13521485 13521636 -137261917 - L2 LINE L2 -3135 179 25 22 0 0 0 chr11 13522278 13522300 -137261253 + AT_rich Low_complexity Low_complexity 1 22 0 810 217 122 30 chr11 13522528 13522758 -137260795 + MER112 DNA MER1_type 8 258 -2 265 345 18 9 chr11 13522865 13522975 -137260578 + L2 LINE L2 3197 3307 -6 488 250 55 6 chr11 13523379 13523398 -137260155 - L1MA10 LINE L1 0 6334 6316 1514 238 133 66 chr11 13523398 13524037 -137259516 - L1ME2 LINE L1 -11 6153 5447 1913 145 16 10 chr11 13524037 13524341 -137259212 - AluSx SINE Alu -6 306 1 1514 238 133 66 chr11 13524341 13524516 -137259037 - L1ME2 LINE L1 -717 5447 5285 489 174 29 6 chr11 13524572 13524744 -137258809 + (TA)n Simple_repeat Simple_repeat 2 177 0 350 74 19 0 chr11 13524744 13524798 -137258755 - L1ME2 LINE L1 -904 5242 5188 1437 29 0 6 chr11 13524804 13524975 -137258578 - L1PA5 LINE L1 0 6154 5985 696 220 77 0 chr11 13525147 13525315 -137258238 + L1MD2 LINE L1 6161 6341 -18 378 290 143 51 chr11 13525385 13525602 -137257951 + MIR SINE MIR 6 242 -20 2223 124 0 7 chr11 13525621 13525928 -137257625 - AluSx SINE Alu -7 305 1 2112 214 17 40 chr11 13526542 13527148 -137256405 - LTR27 LTR ERV1 -141 495 3 986 323 100 29 chr11 13527495 13528585 -137254968 - L2 LINE L2 -4 3309 2147 336 317 41 24 chr11 13528788 13528911 -137254642 - L2 LINE L2 -4 3268 3144 362 253 11 11 chr11 13529051 13529138 -137254415 - MIR SINE MIR -155 107 21 411 290 51 18 chr11 13529616 13529833 -137253720 + L2 LINE L2 2590 2813 -501 380 292 50 0 chr11 13530077 13530197 -137253356 + L2 LINE L2 3147 3272 0 854 119 33 12 chr11 13531631 13531887 -137251666 + CT-rich Low_complexity Low_complexity 1 261 0 240 170 75 0 chr11 13531892 13531945 -137251608 - Alu SINE Alu 0 302 246 1576 193 20 7 chr11 13531955 13532256 -137251297 - AluJb SINE Alu -7 305 1 254 246 8 102 chr11 13532571 13532689 -137250864 - MER34 LTR ERV1 -395 147 41 395 229 137 0 chr11 13532749 13532880 -137250673 + MIR SINE MIR 77 225 -37 264 137 0 0 chr11 13533033 13533084 -137250469 + (T)n Simple_repeat Simple_repeat 1 51 0 2847 13 0 3 chr11 13534257 13534569 -137248984 - AluYa5 SINE Alu 0 311 1 1168 254 98 33 chr11 13534701 13535187 -137248366 - MLT1H LTR MaLR -4 545 18 1640 125 24 52 chr11 13535333 13535661 -137247892 - MER33 DNA MER1_type 0 324 6 204 284 49 20 chr11 13535736 13535838 -137247715 + MIR SINE MIR 152 256 -6 203 0 0 36 chr11 13535955 13535983 -137247570 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 1738 177 0 32 chr11 13535985 13536295 -137247258 - AluJb SINE Alu -12 300 1 5709 36 7 0 chr11 13536476 13537179 -137246374 - L1PA5 LINE L1 -226 5928 5222 1519 174 70 86 chr11 13537628 13538001 -137245552 + MLT1B LTR MaLR 1 367 -23 242 145 53 26 chr11 13538001 13538077 -137245476 + (TTATA)n Simple_repeat Simple_repeat 3 80 0 192 152 0 0 chr11 13538105 13538138 -137245415 + MIR SINE MIR 78 110 -152 543 273 82 8 chr11 13538200 13538509 -137245044 + MLT1I LTR MaLR 1 370 -39 1524 199 0 33 chr11 13539143 13539445 -137244108 + AluJo SINE Alu 4 295 -17 274 182 36 0 chr11 13539516 13539571 -137243982 + L2 LINE L2 3254 3310 -3 241 252 90 27 chr11 13539582 13539693 -137243860 + MIR SINE MIR 25 142 -120 318 243 45 90 chr11 13540663 13540840 -137242713 + L2 LINE L2 2336 2504 -810 303 299 111 8 chr11 13542917 13543034 -137240519 + L2 LINE L2 3183 3311 -2 614 267 74 0 chr11 13543575 13543751 -137239802 + MIR SINE MIR 74 262 0 1289 258 109 28 chr11 13544060 13544455 -137239098 - LTR16A LTR ERVL -6 444 18 2388 200 114 137 chr11 13545298 13546160 -137237393 + L1MC4 LINE L1 6356 7236 -806 232 31 0 0 chr11 13546160 13546192 -137237361 + HSMAR1 DNA Mariner 1 32 -1255 1898 70 8 0 chr11 13546192 13546459 -137237094 + L1PA8 LINE L1 5912 6180 0 455 84 0 56 chr11 13546464 13546535 -137237018 - MADE1 DNA Mariner -12 68 2 2388 200 114 137 chr11 13546535 13546836 -137236717 + L1MC4 LINE L1 7239 7599 -443 3160 178 24 43 chr11 13546844 13546930 -137236623 + L1MB7 LINE L1 5478 5564 -620 2256 82 26 10 chr11 13546930 13547233 -137236320 + AluSg SINE Alu 1 308 -2 3160 178 24 43 chr11 13547233 13547866 -137235687 + L1MB7 LINE L1 5564 6183 -1 584 309 104 35 chr11 13547980 13548404 -137235149 - L2 LINE L2 -1391 1923 1471 1917 249 69 68 chr11 13548464 13549170 -137234383 - MER72 LTR ERV1 -10 712 6 427 255 108 19 chr11 13549247 13549404 -137234149 + MIR SINE MIR 86 256 -6 264 304 35 61 chr11 13549460 13549575 -137233978 + L2 LINE L2 3190 3301 -12 282 346 28 22 chr11 13549599 13549778 -137233775 - MIR SINE MIR -14 248 69 2017 134 3 0 chr11 13550249 13550564 -137232989 - AluSq SINE Alu 0 316 1 439 59 15 15 chr11 13550914 13550982 -137232571 + (TTCC)n Simple_repeat Simple_repeat 3 70 0 568 257 80 33 chr11 13550995 13551295 -137232258 - L1MC5 LINE L1 -387 7574 7261 220 299 75 19 chr11 13551484 13551591 -137231962 - L2 LINE L2 -1 3271 3159 222 303 103 49 chr11 13553402 13553587 -137229966 + MIR SINE MIR 61 255 -7 698 293 108 13 chr11 13553640 13553872 -137229681 + MIR SINE MIR 8 261 -1 202 256 0 0 chr11 13554351 13554394 -137229159 + A-rich Low_complexity Low_complexity 1 43 0 2554 38 0 0 chr11 13554890 13555182 -137228371 - AluY SINE Alu -19 292 1 326 170 2 31 chr11 13555620 13555696 -137227857 + L1M2 LINE L1 5767 5841 -339 279 0 0 0 chr11 13555784 13555815 -137227738 + (CA)n Simple_repeat Simple_repeat 1 31 0 408 284 149 37 chr11 13555822 13556143 -137227410 + L2 LINE L2 2231 2587 -727 8091 127 19 3 chr11 13556324 13557533 -137226020 + Tigger3b DNA MER2_type 4 1231 0 276 306 101 44 chr11 13557618 13557981 -137225572 + L2 LINE L2 2683 3061 -211 8036 136 11 11 chr11 13558010 13558342 -137225211 - HSMAR2 DNA Mariner -68 1234 903 13107 81 0 0 chr11 13558342 13560778 -137222775 + L1PA7 LINE L1 3709 6149 -5 8036 136 11 11 chr11 13560778 13561678 -137221875 - HSMAR2 DNA Mariner -399 903 3 287 262 24 24 chr11 13561874 13561958 -137221595 - HAL1b LINE L1 -437 911 828 22 88 0 0 chr11 13562613 13562670 -137220883 + AT_rich Low_complexity Low_complexity 1 57 0 245 316 55 33 chr11 13562678 13562953 -137220600 - L1M4 LINE L1 -2988 3158 2878 22 56 0 0 chr11 13562990 13563026 -137220527 + AT_rich Low_complexity Low_complexity 1 36 0 1093 243 98 3 chr11 13563255 13563572 -137219981 + L2 LINE L2 2403 2749 -565 346 148 56 0 chr11 13563572 13563626 -137219927 - Tigger3(Golem) DNA MER2_type -1 3028 2972 * 1863 93 7 7 chr11 13563625 13563894 -137219659 - Tigger3(Golem) DNA MER2_type -226 2803 2535 481 296 147 75 chr11 13565085 13565742 -137217811 + L2 LINE L2 2571 3270 -2 2299 93 0 7 chr11 13565846 13566146 -137217407 + AluSg SINE Alu 1 298 -12 322 285 75 92 chr11 13566706 13567064 -137216489 - L2 LINE L2 -4 3268 2917 420 228 119 0 chr11 13567127 13567228 -137216325 + MER94 DNA DNA 1 113 -21 1677 158 63 36 chr11 13567431 13567473 -137216080 - THE1C LTR MaLR 0 428 389 2303 108 0 0 chr11 13567473 13567794 -137215759 + AluSq SINE Alu 1 313 0 1677 158 63 36 chr11 13567794 13567843 -137215710 - THE1C LTR MaLR -39 389 343 4444 92 37 2 chr11 13567843 13568440 -137215113 - L1PA10 LINE L1 -5 6163 5546 1677 158 63 36 chr11 13568440 13568766 -137214787 - THE1C LTR MaLR -85 343 1 234 268 0 122 chr11 13568805 13568928 -137214625 + L2 LINE L2 3150 3257 -15 585 255 112 48 chr11 13568936 13569187 -137214366 + L2 LINE L2 3042 3308 -5 287 291 201 0 chr11 13570661 13570795 -137212758 - L2 LINE L2 0 3272 3112 190 261 0 0 chr11 13571834 13571880 -137211673 - MIR SINE MIR -65 143 98 242 279 109 24 chr11 13572169 13572334 -137211219 + MIR3 SINE MIR 9 187 -21 1518 252 94 29 chr11 13573081 13573127 -137210426 - MLT2B1 LTR ERVL 0 520 478 306 0 0 0 chr11 13573127 13573161 -137210392 + (TG)n Simple_repeat Simple_repeat 2 35 0 1518 252 94 29 chr11 13573161 13573348 -137210205 - MLT2B1 LTR ERVL -42 478 305 297 0 0 0 chr11 13573348 13573381 -137210172 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 1518 252 94 29 chr11 13573381 13573634 -137209919 - MLT2B1 LTR ERVL -215 305 1 249 283 43 11 chr11 13574563 13574655 -137208898 - LTR67 LTR ERVL -75 482 388 1882 154 51 0 chr11 13575238 13575530 -137208023 - AluJb SINE Alu -5 307 1 181 282 24 89 chr11 13575555 13575679 -137207874 - L2 LINE L2 0 3272 3157 460 321 23 0 chr11 13575744 13575875 -137207678 + MER94 DNA DNA 1 134 0 1923 153 3 16 chr11 13575929 13576237 -137207316 - AluSx SINE Alu -8 304 1 695 257 77 80 chr11 13576339 13576543 -137207010 - MLT1K LTR MaLR -19 569 365 2351 153 80 5 chr11 13576543 13576941 -137206612 - MSTA LTR MaLR 0 428 1 695 257 77 80 chr11 13576941 13577125 -137206428 - MLT1K LTR MaLR -223 365 182 726 242 76 114 chr11 13577195 13577696 -137205857 + LTR38 LTR ERV1 50 541 -15 1336 183 71 11 chr11 13578139 13578407 -137205146 - AluJo SINE Alu -18 294 11 323 329 63 0 chr11 13578415 13578558 -137204995 + MIR SINE MIR 70 221 -41 2097 133 3 0 chr11 13578594 13578888 -137204665 - AluSq SINE Alu -18 295 1 436 234 95 7 chr11 13579174 13579311 -137204242 + MIR SINE MIR 85 233 -29 1772 169 13 13 chr11 13579997 13580305 -137203248 - AluJb SINE Alu -3 309 2 597 283 25 29 chr11 13580305 13580545 -137203008 - LTR16A1 LTR ERVL -6 451 213 212 255 20 0 chr11 13580776 13580827 -137202726 - L3 LINE CR1 -204 1373 1322 190 339 18 0 chr11 13580848 13580904 -137202649 - L2 LINE L2 -8 3264 3208 332 344 16 0 chr11 13580904 13581029 -137202524 - L3 LINE CR1 -829 748 622 2003 125 3 56 chr11 13581353 13581673 -137201880 + AluSx SINE Alu 1 303 -9 28 91 0 0 chr11 13581699 13581776 -137201777 + AT_rich Low_complexity Low_complexity 1 77 0 236 279 0 0 chr11 13582449 13582510 -137201043 + L1M4 LINE L1 3881 3941 -2205 409 264 0 98 chr11 13582588 13582751 -137200802 - MIR SINE MIR -21 241 95 631 251 81 51 chr11 13583059 13583156 -137200397 + MIR SINE MIR 14 107 -155 9254 161 22 2 chr11 13583156 13583887 -137199666 - L1PA13 LINE L1 0 6163 5448 1534 186 33 20 chr11 13583887 13584188 -137199365 - AluJb SINE Alu -7 305 1 9254 161 22 2 chr11 13584188 13585803 -137197750 - L1PA13 LINE L1 -715 5448 3793 631 251 81 51 chr11 13585803 13585940 -137197613 + MIR SINE MIR 107 255 -7 570 212 114 8 chr11 13586014 13586146 -137197407 + MER5A DNA MER1_type 1 146 -43 1836 253 48 23 chr11 13586146 13586624 -137196929 + MLT1F LTR MaLR 1 490 -52 7061 43 1 1 chr11 13586637 13587477 -137196076 - L1PA5 LINE L1 -4 6150 5311 426 138 0 0 chr11 13587492 13587557 -137195996 + MLT1F LTR MaLR 501 565 -2 262 235 0 0 chr11 13587559 13587610 -137195943 + MER5A DNA MER1_type 139 189 0 2214 108 3 13 chr11 13587693 13588009 -137195544 + AluSq SINE Alu 1 313 0 197 294 24 24 chr11 13588078 13588163 -137195390 + L3 LINE CR1 1065 1149 -428 1035 242 58 31 chr11 13590177 13590628 -137192925 - Charlie2 DNA MER1_type -1 2861 2399 * 2177 277 70 45 chr11 13590623 13591451 -137192102 - Charlie2b DNA MER1_type -1741 1041 193 216 196 0 0 chr11 13591471 13591517 -137192036 + A-rich Low_complexity Low_complexity 1 46 0 273 292 28 0 chr11 13591610 13591682 -137191871 - LTR67 LTR ERVL -370 187 114 215 336 167 9 chr11 13591884 13592208 -137191345 + L2 LINE L2 2353 2727 -587 826 208 60 0 chr11 13592231 13592399 -137191154 + MER5B DNA MER1_type 1 178 0 308 263 70 32 chr11 13592440 13592596 -137190957 + L2 LINE L2 2845 3006 -266 2817 3 0 7 chr11 13592685 13592990 -137190563 + AluYa5 SINE Alu 1 303 -8 189 121 0 0 chr11 13593113 13593146 -137190407 + (TGAA)n Simple_repeat Simple_repeat 3 35 0 210 171 0 0 chr11 13593411 13593446 -137190107 + (TTA)n Simple_repeat Simple_repeat 1 35 0 802 268 77 45 chr11 13594090 13594649 -137188904 - L1ME4a LINE L1 -41 6080 5504 252 301 36 0 chr11 13595666 13595749 -137187804 - MER117 DNA MER1_type 0 197 112 186 318 106 0 chr11 13595811 13595877 -137187676 + L2 LINE L2 3199 3271 -1 215 316 88 52 chr11 13596258 13596451 -137187102 - MIR SINE MIR -41 221 22 395 134 0 56 chr11 13596591 13596733 -137186820 + (CAGAGA)n Simple_repeat Simple_repeat 5 138 0 202 244 0 0 chr11 13596867 13596912 -137186641 + T-rich Low_complexity Low_complexity 1 45 0 1653 183 30 21 chr11 13597992 13598326 -137185227 + L1MA9 LINE L1 5972 6308 -4 2098 132 3 10 chr11 13599360 13599671 -137183882 + AluSx SINE Alu 1 309 -3 529 238 94 0 chr11 13599840 13600000 -137183553 + HAL1 LINE L1 2237 2411 -96 378 297 93 0 chr11 13600201 13600319 -137183234 + L2 LINE L2 3136 3264 -8 343 262 223 53 chr11 13600749 13600955 -137182598 - MIR SINE MIR 0 262 22 349 269 11 0 chr11 13601195 13601288 -137182265 - MIR SINE MIR -2 260 167 2125 111 0 0 chr11 13601332 13601640 -137181913 + AluSg SINE Alu 1 308 0 610 200 9 0 chr11 13601654 13601764 -137181789 + MER58A DNA MER1_type 5 115 0 320 64 0 21 chr11 13601765 13601812 -137181741 - AluSc SINE Alu -172 127 82 559 77 13 0 chr11 13601912 13601990 -137181563 - AluY SINE Alu -232 79 1 363 204 158 0 chr11 13601990 13602142 -137181411 + L1MD1 LINE L1 4318 4493 -1653 4942 174 40 14 chr11 13602153 13603584 -137179969 + L1MD1 LINE L1 4769 6235 -7 26 30 0 0 chr11 13603749 13603782 -137179771 + AT_rich Low_complexity Low_complexity 1 33 0 403 255 45 41 chr11 13603850 13604031 -137179522 - MIR SINE MIR -67 141 11 645 314 75 9 chr11 13604039 13604265 -137179288 + MIR SINE MIR 8 248 -14 938 197 86 4 chr11 13605457 13605690 -137177863 + Charlie1 DNA MER1_type 1721 1972 -789 258 291 203 11 chr11 13605717 13605899 -137177654 - L2 LINE L2 -1094 2220 2004 532 210 168 0 chr11 13606520 13606687 -137176866 - MER5C DNA MER1_type -2 322 128 767 173 60 0 chr11 13607249 13607399 -137176154 - FRAM SINE Alu -18 158 1 210 71 0 0 chr11 13608192 13608220 -137175333 + (A)n Simple_repeat Simple_repeat 1 28 0 1948 148 3 3 chr11 13608268 13608559 -137174994 + AluSx SINE Alu 3 293 -19 2084 143 0 3 chr11 13608743 13609044 -137174509 - AluSx SINE Alu -12 300 1 6520 57 5 8 chr11 13609252 13610101 -137173452 + L1PA6 LINE L1 5308 6153 -1 25 31 0 0 chr11 13610102 13610134 -137173419 + AT_rich Low_complexity Low_complexity 1 32 0 258 179 0 90 chr11 13610807 13610848 -137172705 - MER5C DNA MER1_type -200 124 92 2099 122 7 3 chr11 13610848 13611135 -137172418 - AluSg SINE Alu -22 288 1 258 179 0 90 chr11 13611135 13611171 -137172382 - MER5C DNA MER1_type -232 92 54 339 85 0 0 chr11 13611449 13611496 -137172057 + (TG)n Simple_repeat Simple_repeat 2 48 0 26 88 0 0 chr11 13611755 13611823 -137171730 + AT_rich Low_complexity Low_complexity 1 68 0 344 295 93 51 chr11 13612000 13612237 -137171316 + L1MC/D LINE L1 5313 5559 -2249 464 308 49 45 chr11 13612875 13613122 -137170431 - MIR SINE MIR -13 249 2 3316 72 28 0 chr11 13614476 13614906 -137168647 + MLT2A1 LTR ERVL 1 442 -2 1069 264 108 24 chr11 13614906 13615352 -137168201 - LTR33 LTR ERVL -14 507 21 1453 165 12 5 chr11 13615658 13615996 -137167557 + MSTB LTR MaLR 1 426 0 2681 151 15 0 chr11 13615996 13616461 -137167092 + MSTB-int LTR MaLR 1 472 -1179 611 261 72 57 chr11 13616473 13616948 -137166605 - L1MEd LINE L1 -3220 3721 3240 232 211 0 53 chr11 13617269 13617345 -137166208 - HAL1 LINE L1 -904 1603 1532 330 274 86 43 chr11 13617527 13617782 -137165771 - L1MEd LINE L1 -4908 2023 1758 235 230 62 45 chr11 13617874 13618052 -137165501 - L1MEd LINE L1 -4961 1462 1282 2354 75 34 0 chr11 13618052 13618346 -137165207 + AluY SINE Alu 1 304 -7 210 139 0 0 chr11 13618522 13618558 -137164995 + (TTTC)n Simple_repeat Simple_repeat 2 37 0 760 152 46 53 chr11 13618877 13619028 -137164525 - MER5B DNA MER1_type -28 150 1 594 242 45 93 chr11 13619085 13619354 -137164199 + MER102b DNA MER1_type 54 309 -32 297 0 0 0 chr11 13619806 13619839 -137163714 + (TG)n Simple_repeat Simple_repeat 1 33 0 972 134 0 0 chr11 13619839 13619996 -137163557 + (TA)n Simple_repeat Simple_repeat 1 157 0 5069 211 19 16 chr11 13620595 13621944 -137161609 + L1 LINE L1 2798 4151 -1995 1021 184 40 5 chr11 13621946 13622147 -137161406 - MSTA LTR MaLR 0 428 221 264 219 0 0 chr11 13622163 13622227 -137161326 + L1M4 LINE L1 3179 3242 -2904 932 121 57 0 chr11 13622229 13622386 -137161167 + MSTA LTR MaLR 42 207 -221 527 71 24 0 chr11 13622374 13622458 -137161095 - MSTA LTR MaLR -342 86 1 * 1507 91 45 0 chr11 13622474 13622672 -137160881 + AluSx SINE Alu 1 207 -105 4438 64 0 2 chr11 13622775 13623338 -137160215 + L1PA6 LINE L1 5593 6154 0 347 285 41 49 chr11 13623618 13623741 -137159812 - MIR SINE MIR -67 141 20 209 341 32 16 chr11 13623964 13624090 -137159463 + L2 LINE L2 2599 2726 -588 274 267 103 26 chr11 13624140 13624256 -137159297 + MIR3 SINE MIR 70 194 -14 311 154 0 0 chr11 13624282 13624334 -137159219 + A-rich Low_complexity Low_complexity 1 52 0 224 240 40 0 chr11 13624421 13624471 -137159082 + MIR SINE MIR 53 104 -158 212 261 101 0 chr11 13624797 13624866 -137158687 + L2 LINE L2 3238 3313 0 804 249 173 25 chr11 13625297 13625655 -137157898 - L2 LINE L2 -30 3283 2873 35 24 0 0 chr11 13625773 13625815 -137157738 + AT_rich Low_complexity Low_complexity 1 42 0 387 241 29 95 chr11 13626356 13626493 -137157060 + MIR3 SINE MIR 15 142 -66 308 253 13 13 chr11 13627447 13627526 -137156027 + L2 LINE L2 3223 3301 -12 486 236 57 48 chr11 13627744 13628058 -137155495 - L1M4 LINE L1 -2736 3410 3094 1819 180 0 10 chr11 13628086 13628391 -137155162 - AluJo SINE Alu -2 310 9 5532 194 65 3 chr11 13628459 13629575 -137153978 + MSTB-int LTR MaLR 466 1651 0 2390 183 9 12 chr11 13629575 13630002 -137153551 + MSTB LTR MaLR 1 426 0 726 211 106 0 chr11 13630084 13630264 -137153289 - L2 LINE L2 0 3313 3115 3091 252 23 8 chr11 13630366 13631289 -137152264 - L1PA15-16 LINE L1 -3388 3461 2525 416 79 13 13 chr11 13631280 13631356 -137152197 + L1PA15-16 LINE L1 2111 2186 -4663 * 2369 62 12 0 chr11 13631369 13631706 -137151847 - L1PA15-16 LINE L1 -4752 2097 1757 4865 148 3 5 chr11 13631711 13632475 -137151078 - L1PA15-16 LINE L1 -6076 773 12 639 223 22 44 chr11 13632469 13632698 -137150855 - L1M4 LINE L1 -950 5196 4973 * 1187 226 40 13 chr11 13632678 13633055 -137150498 - L1ME LINE L1 -467 5703 5317 258 152 0 0 chr11 13633077 13633123 -137150430 - MLT1G LTR MaLR -5 585 540 321 209 114 19 chr11 13633269 13633374 -137150179 - MLT1H LTR MaLR -434 115 1 1138 256 77 59 chr11 13633376 13633540 -137150013 - L1ME LINE L1 -924 5222 5062 2191 107 17 0 chr11 13633540 13633830 -137149723 + AluSg SINE Alu 1 295 -15 1138 256 77 59 chr11 13633830 13634458 -137149095 - L1ME LINE L1 -1084 5062 4416 21 57 0 0 chr11 13634468 13634503 -137149050 + AT_rich Low_complexity Low_complexity 1 35 0 270 258 97 32 chr11 13634596 13634689 -137148864 + MLT2E LTR ERVL 57 155 -473 181 301 39 68 chr11 13634786 13634889 -137148664 - L3 LINE CR1 -1418 159 60 545 299 89 82 chr11 13635000 13635485 -137148068 + L2 LINE L2 2806 3293 -20 215 290 127 68 chr11 13635510 13636013 -137147540 - L2 LINE L2 -1242 2072 1540 454 340 24 15 chr11 13636061 13636267 -137147286 - MIR SINE MIR -54 208 1 224 298 57 50 chr11 13636747 13636888 -137146665 - L2 LINE L2 -2570 744 603 572 258 129 58 chr11 13637330 13637464 -137146089 + MIR SINE MIR 6 129 -133 1636 163 33 39 chr11 13637464 13637771 -137145782 + AluJb SINE Alu 1 305 -7 572 258 129 58 chr11 13637771 13637876 -137145677 + MIR SINE MIR 129 262 0 1349 146 13 4 chr11 13638188 13638427 -137145126 + L1MB3 LINE L1 5935 6175 -8 248 269 45 45 chr11 13638646 13638780 -137144773 + L1ME LINE L1 5518 5651 -470 1782 161 4 4 chr11 13638782 13639062 -137144491 + AluSx SINE Alu 1 280 -32 1301 92 58 0 chr11 13639062 13639235 -137144318 + AluY SINE Alu 97 279 -32 261 0 0 0 chr11 13639250 13639279 -137144274 + (TA)n Simple_repeat Simple_repeat 2 30 0 28 48 0 0 chr11 13640167 13640209 -137143344 + AT_rich Low_complexity Low_complexity 1 42 0 618 150 30 8 chr11 13640314 13640447 -137143106 + L1MB2 LINE L1 5935 6070 -101 238 292 104 58 chr11 13640469 13640623 -137142930 - L2 LINE L2 -236 3036 2876 191 250 12 0 chr11 13640859 13640943 -137142610 + GA-rich Low_complexity Low_complexity 2 86 0 399 296 75 80 chr11 13641226 13641791 -137141762 - L2 LINE L2 -85 3187 2635 338 261 140 7 chr11 13643547 13643727 -137139826 + MIR SINE MIR 63 262 0 252 301 92 6 chr11 13643967 13644130 -137139423 + L2 LINE L2 2703 2879 -435 266 369 51 41 chr11 13644157 13644352 -137139201 + L2 LINE L2 2982 3178 -94 332 123 0 31 chr11 13644435 13644500 -137139053 + (GGAA)n Simple_repeat Simple_repeat 2 64 0 404 245 176 15 chr11 13645288 13645492 -137138061 + MIR SINE MIR 20 256 -6 430 258 0 41 chr11 13645627 13645724 -137137829 - L2 LINE L2 0 3272 3180 994 182 16 31 chr11 13645789 13645981 -137137572 - MER5A DNA MER1_type 0 189 1 436 335 81 0 chr11 13646604 13646789 -137136764 + MIR SINE MIR 49 248 -14 209 348 127 17 chr11 13646978 13647159 -137136394 - L2 LINE L2 -1335 1979 1779 2177 98 3 0 chr11 13647191 13647478 -137136075 + AluSp SINE Alu 1 288 -25 213 39 0 0 chr11 13648248 13648274 -137135279 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 2008 131 3 10 chr11 13648547 13648845 -137134708 - AluSq SINE Alu -17 296 1 470 270 40 81 chr11 13648988 13649162 -137134391 + MIR SINE MIR 16 182 -80 871 257 40 32 chr11 13649164 13649417 -137134136 + MIR SINE MIR 8 262 0 186 143 0 0 chr11 13649482 13649517 -137134036 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 27 0 0 0 chr11 13650786 13650813 -137132740 + AT_rich Low_complexity Low_complexity 1 27 0 240 111 0 0 chr11 13651423 13651468 -137132085 + (ATTG)n Simple_repeat Simple_repeat 4 48 0 498 313 128 4 chr11 13651471 13651714 -137131839 - L2 LINE L2 -20 3293 3021 237 197 71 79 chr11 13652000 13652127 -137131426 - L2 LINE L2 -211 3061 2936 670 113 35 21 chr11 13652127 13652269 -137131284 + CT-rich Low_complexity Low_complexity 3 146 0 558 192 10 0 chr11 13652883 13652987 -137130566 - Tigger5 DNA MER2_type 0 2323 2219 246 245 0 0 chr11 13652982 13653035 -137130518 - Tigger5 DNA MER2_type -2270 53 1 * 397 294 125 19 chr11 13653035 13653239 -137130314 + L1ME4a LINE L1 5715 5896 -225 776 188 16 0 chr11 13653239 13653367 -137130186 + FLAM_A SINE Alu 1 130 -3 397 294 125 19 chr11 13653367 13653530 -137130023 + L1ME4a LINE L1 5896 6121 0 507 298 50 22 chr11 13654060 13654382 -137129171 - L1M4 LINE L1 -1083 5063 4733 320 310 0 0 chr11 13654985 13655072 -137128481 + MER5B DNA MER1_type 68 154 -24 210 294 44 0 chr11 13655120 13655188 -137128365 + MIR SINE MIR 111 181 -81 * 856 241 5 0 chr11 13655186 13655377 -137128176 - MIR SINE MIR 0 262 71 191 247 178 0 chr11 13655400 13655473 -137128080 + MIR SINE MIR 167 252 -10 1128 302 186 8 chr11 13655839 13656581 -137126972 - L3 LINE CR1 -100 1477 604 695 228 56 0 chr11 13656632 13656812 -137126741 + MIR SINE MIR 52 241 -21 578 262 87 0 chr11 13656834 13656983 -137126570 - L3 LINE CR1 -982 595 434 23 33 0 0 chr11 13658444 13658474 -137125079 + GC_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr11 13658597 13658625 -137124928 + GC_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr11 13658700 13658735 -137124818 + GC_rich Low_complexity Low_complexity 1 35 0 342 333 21 36 chr11 13660611 13660803 -137122750 + MIR3 SINE MIR 17 205 -3 295 265 191 5 chr11 13661620 13661809 -137121744 + MIR SINE MIR 15 238 -24 1746 166 28 0 chr11 13662229 13662518 -137121035 - AluJb SINE Alu -15 297 1 681 278 43 17 chr11 13662878 13663112 -137120441 + MIR SINE MIR 14 253 -9 200 127 309 0 chr11 13663998 13664053 -137119500 + MIR SINE MIR 82 153 -109 570 225 151 23 chr11 13664062 13664280 -137119273 - MIR SINE MIR 0 262 17 3801 103 14 4 chr11 13664410 13664963 -137118590 + L1PA16 LINE L1 5599 6157 -9 3786 181 23 74 chr11 13664972 13665544 -137118009 + L1MB5 LINE L1 5114 5714 -620 1667 180 0 46 chr11 13665544 13665850 -137117703 + AluJo SINE Alu 1 292 -20 3786 181 23 74 chr11 13665850 13666405 -137117148 + L1MB5 LINE L1 5714 6334 0 380 200 139 9 chr11 13666403 13666518 -137117035 + L1MB4 LINE L1 6049 6178 -2 * 1072 274 80 38 chr11 13666527 13666954 -137116599 + L1ME3A LINE L1 5691 6135 -35 1857 149 3 3 chr11 13667241 13667523 -137116030 - AluJb SINE Alu -30 282 1 691 249 81 23 chr11 13668074 13668295 -137115258 + MLT1J2 LTR MaLR 5 238 -212 473 285 86 19 chr11 13668703 13668970 -137114583 + L1ME4a LINE L1 5619 5903 -218 606 152 72 58 chr11 13669443 13669581 -137113972 + AluJb SINE Alu 173 312 0 234 270 171 0 chr11 13670318 13670429 -137113124 + L2 LINE L2 3184 3313 0 379 283 136 11 chr11 13670830 13671021 -137112532 - MIR SINE MIR -34 228 14 337 267 115 30 chr11 13671421 13671586 -137111967 + MIR SINE MIR 8 186 -76 310 263 53 0 chr11 13671684 13671779 -137111774 + L1MC4a LINE L1 5542 5641 -480 356 237 112 26 chr11 13671811 13671963 -137111590 + L1MC4a LINE L1 5723 5887 -1921 282 29 0 0 chr11 13671964 13671999 -137111554 + (CA)n Simple_repeat Simple_repeat 1 35 0 286 359 75 35 chr11 13672087 13672405 -137111148 + L2 LINE L2 2887 3217 -55 364 270 47 62 chr11 13673496 13673707 -137109846 - L2 LINE L2 -8 3305 3098 1562 337 84 24 chr11 13673956 13675207 -137108346 - L2 LINE L2 -199 3073 1747 242 258 210 44 chr11 13675329 13675558 -137107995 - L2 LINE L2 -2808 506 240 2112 99 21 7 chr11 13675562 13675871 -137107682 + AluSc SINE Alu 1 309 0 259 311 92 8 chr11 13676926 13677045 -137106508 - L2 LINE L2 -229 3043 2915 258 286 57 19 chr11 13677174 13677279 -137106274 - L2 LINE L2 -490 2824 2716 385 249 40 79 chr11 13677778 13677905 -137105648 + MIR SINE MIR 37 157 -105 2267 101 0 3 chr11 13677905 13678201 -137105352 + AluSq SINE Alu 3 297 -16 385 249 40 79 chr11 13678201 13678250 -137105303 + MIR SINE MIR 157 206 -56 264 282 13 13 chr11 13679854 13679932 -137103621 + CT-rich Low_complexity Low_complexity 3 80 0 418 242 46 134 chr11 13680185 13680319 -137103234 + MIR SINE MIR 21 134 -128 1778 178 20 0 chr11 13680319 13680611 -137102942 + AluJb SINE Alu 1 298 -14 418 242 46 134 chr11 13680611 13680670 -137102883 + MIR SINE MIR 134 197 -65 4295 64 2 6 chr11 13680932 13681478 -137102075 + L1PA8 LINE L1 5629 6172 0 25 0 0 0 chr11 13681507 13681532 -137102021 + AT_rich Low_complexity Low_complexity 1 25 0 1932 128 69 3 chr11 13682974 13683263 -137100290 - AluJo SINE Alu -4 308 1 297 0 0 0 chr11 13683457 13683490 -137100063 + (TG)n Simple_repeat Simple_repeat 2 34 0 2307 81 3 0 chr11 13683512 13683796 -137099757 - AluSp SINE Alu -28 285 1 228 182 0 0 chr11 13686066 13686110 -137097443 + (CA)n Simple_repeat Simple_repeat 2 45 0 344 119 17 0 chr11 13686118 13686177 -137097376 + (TA)n Simple_repeat Simple_repeat 1 60 0 1015 258 133 28 chr11 13686335 13687111 -137096442 + L2 LINE L2 2451 3313 0 376 307 40 7 chr11 13687713 13687863 -137095690 - MER117 DNA MER1_type -37 160 6 251 208 0 0 chr11 13689346 13689399 -137094154 - L2 LINE L2 -3 3269 3217 499 253 114 6 chr11 13689485 13689651 -137093902 + MIR SINE MIR 15 198 -64 516 279 137 24 chr11 13690354 13690691 -137092862 + L1MC4 LINE L1 7656 8030 -12 383 282 25 43 chr11 13690935 13691102 -137092451 - MIR SINE MIR -57 205 42 1314 272 21 3 chr11 13691137 13691472 -137092081 - LTR16C LTR ERVL 0 491 151 638 310 40 35 chr11 13692773 13692999 -137090554 - MIR SINE MIR -15 247 21 2010 161 62 5 chr11 13693048 13693281 -137090272 - L1MB4 LINE L1 -1 6179 5961 2163 123 7 0 chr11 13693281 13693583 -137089970 + AluSq SINE Alu 1 304 -9 2010 161 62 5 chr11 13693583 13693772 -137089781 - L1MB4 LINE L1 -219 5961 5733 393 247 142 12 chr11 13694212 13694374 -137089179 - MIR SINE MIR -7 255 73 484 307 80 13 chr11 13694380 13694618 -137088935 - L1ME LINE L1 -308 5813 5560 183 100 0 0 chr11 13694723 13694753 -137088800 + (TTGG)n Simple_repeat Simple_repeat 2 31 0 403 225 80 152 chr11 13695017 13695457 -137088096 + L1ME4a LINE L1 5641 6048 -73 872 252 20 20 chr11 13696139 13696385 -137087168 + MIR SINE MIR 7 252 -10 438 202 20 10 chr11 13696675 13696774 -137086779 - MIR SINE MIR -69 193 94 1796 159 33 0 chr11 13697416 13697687 -137085866 + AluJb SINE Alu 5 284 -28 405 0 0 0 chr11 13697687 13697732 -137085821 + (CA)n Simple_repeat Simple_repeat 2 46 0 2360 109 0 0 chr11 13698356 13698660 -137084893 - AluSx SINE Alu -8 304 1 561 203 0 0 chr11 13698702 13698809 -137084744 - MER5A DNA MER1_type -79 110 4 214 312 0 0 chr11 13698981 13699058 -137084495 + MIR SINE MIR 175 251 -11 478 260 8 16 chr11 13699564 13699691 -137083862 + L2 LINE L2 3188 3313 0 354 193 35 61 chr11 13699743 13699857 -137083696 + MIR SINE MIR 36 146 -62 378 275 78 73 chr11 13700532 13700750 -137082803 - MIR SINE MIR -10 252 34 234 258 99 60 chr11 13700948 13701099 -137082454 - MIR SINE MIR -30 232 76 367 286 101 73 chr11 13701504 13701752 -137081801 - MIR SINE MIR 0 262 8 222 200 100 14 chr11 13701882 13701952 -137081601 - MIR SINE MIR -62 200 125 1421 127 0 0 chr11 13702304 13702501 -137081052 + AluSg/x SINE Alu 84 280 -32 204 40 0 0 chr11 13702501 13702526 -137081027 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 22 35 0 0 chr11 13702836 13702865 -137080688 + AT_rich Low_complexity Low_complexity 1 29 0 914 155 0 0 chr11 13703063 13703205 -137080348 - FLAM_C SINE Alu -1 142 1 1142 194 138 3 chr11 13703350 13703633 -137079920 + MER33 DNA MER1_type 3 323 -1 784 180 112 0 chr11 13703906 13704067 -137079486 + MIR SINE MIR 36 214 -48 334 302 35 53 chr11 13704116 13704287 -137079266 - L1ME LINE L1 -690 5432 5267 259 340 0 30 chr11 13704733 13704833 -137078720 + MIR SINE MIR 34 130 -132 266 254 40 54 chr11 13705121 13705293 -137078260 - MIR SINE MIR -79 129 19 705 279 29 33 chr11 13705339 13705583 -137077970 + MIR SINE MIR 2 244 -18 2037 142 6 3 chr11 13706352 13706663 -137076890 - AluSx SINE Alu 0 312 1 762 274 48 36 chr11 13706982 13707230 -137076323 - MIR SINE MIR 0 262 12 264 315 14 0 chr11 13707434 13707507 -137076046 - L2 LINE L2 -30 3283 3210 21 0 0 0 chr11 13708334 13708355 -137075198 + AT_rich Low_complexity Low_complexity 1 21 0 701 205 0 0 chr11 13708355 13708472 -137075081 - FLAM_C SINE Alu -24 119 3 265 274 41 0 chr11 13708792 13708865 -137074688 + L2 LINE L2 3196 3271 -1 541 321 47 22 chr11 13709243 13709496 -137074057 - MIR SINE MIR -10 252 1 279 264 46 92 chr11 13709687 13709861 -137073692 + L2 LINE L2 2943 3108 -164 436 295 22 22 chr11 13710602 13710741 -137072812 + MIR SINE MIR 14 152 -110 431 185 37 0 chr11 13710746 13710827 -137072726 + Tigger3(Golem) DNA MER2_type 3 86 -2943 4340 116 52 13 chr11 13710912 13711629 -137071924 + Tigger3(Golem) DNA MER2_type 2278 3022 -7 460 237 51 17 chr11 13711679 13711797 -137071756 - MIR SINE MIR -105 157 36 903 222 143 17 chr11 13711829 13712059 -137071494 + MIR SINE MIR 2 260 -2 419 284 182 33 chr11 13712161 13712303 -137071250 - L3 LINE CR1 -307 1270 1151 1119 169 42 33 chr11 13712303 13712516 -137071037 - MER20 DNA MER1_type -1 218 4 419 284 182 33 chr11 13712516 13712708 -137070845 - L3 LINE CR1 -426 1151 886 183 366 158 12 chr11 13712867 13713031 -137070522 + L2 LINE L2 2993 3180 -92 268 290 30 20 chr11 13713497 13713597 -137069956 + MIR SINE MIR 37 137 -125 1969 196 62 3 chr11 13713609 13713977 -137069576 - MSTD LTR MaLR -4 392 3 249 353 39 0 chr11 13713991 13714093 -137069460 + MIR SINE MIR 155 260 -2 499 350 101 53 chr11 13714257 13714694 -137068859 - L2 LINE L2 0 3272 2815 871 249 145 39 chr11 13714963 13715034 -137068519 + L2 LINE L2 2651 2713 -600 2553 137 77 20 chr11 13715034 13715437 -137068116 - MSTC LTR MaLR 0 428 3 871 249 145 39 chr11 13715437 13715913 -137067640 + L2 LINE L2 2713 3251 -62 315 0 0 0 chr11 13716247 13716282 -137067271 + (TTA)n Simple_repeat Simple_repeat 1 35 0 552 296 91 14 chr11 13716298 13716518 -137067035 - MIR SINE MIR -18 244 8 201 244 0 0 chr11 13716933 13716978 -137066575 - MIR SINE MIR -56 206 162 232 339 86 0 chr11 13717204 13717326 -137066227 - MIR SINE MIR -63 145 14 2467 52 3 13 chr11 13717959 13718264 -137065289 + AluY SINE Alu 10 311 0 335 268 167 26 chr11 13718331 13718695 -137064858 - MLT1J LTR MaLR 0 511 39 331 259 100 62 chr11 13718959 13719135 -137064418 + MIR3 SINE MIR 5 181 -81 397 258 98 8 chr11 13719994 13720126 -137063427 + L1ME4a LINE L1 5975 6118 -3 255 314 67 0 chr11 13720888 13720993 -137062560 - L2 LINE L2 -19 3294 3183 216 191 0 0 chr11 13720994 13721036 -137062517 + GA-rich Low_complexity Low_complexity 1 42 0 182 246 35 18 chr11 13721127 13721184 -137062369 - MIR SINE MIR -133 75 18 21 36 0 0 chr11 13722788 13722816 -137060737 + AT_rich Low_complexity Low_complexity 1 28 0 286 299 106 29 chr11 13723057 13723264 -137060289 - L2 LINE L2 -556 2758 2536 204 346 0 29 chr11 13723338 13723442 -137060111 + L2 LINE L2 2890 2990 -282 * 334 265 77 8 chr11 13723423 13723540 -137060013 + MIR SINE MIR 60 184 -78 587 224 148 19 chr11 13723562 13723772 -137059781 + L2 LINE L2 2614 2850 -464 216 299 179 60 chr11 13723773 13723890 -137059663 - MER91C DNA MER1_type 0 140 10 1204 234 158 31 chr11 13723893 13724191 -137059362 + L2 LINE L2 2842 3210 -103 208 27 54 27 chr11 13724191 13724228 -137059325 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 1204 234 158 31 chr11 13724228 13724348 -137059205 + L2 LINE L2 3210 3313 0 191 313 47 116 chr11 13724442 13724717 -137058836 + L2 LINE L2 3006 3261 -11 244 317 58 8 chr11 13725860 13725980 -137057573 - L1ME LINE L1 -307 5814 5689 2072 125 4 0 chr11 13726616 13726922 -137056631 - AluSc SINE Alu 0 307 1 918 215 77 13 chr11 13727426 13727659 -137055894 - MIR SINE MIR -14 248 1 709 294 34 8 chr11 13728682 13728917 -137054636 - MIR SINE MIR 0 262 22 562 296 115 12 chr11 13728922 13729175 -137054378 - L2 LINE L2 0 3313 3035 1141 234 96 32 chr11 13729195 13729571 -137053982 - MLT1J2 LTR MaLR -29 421 22 1017 243 161 24 chr11 13729593 13730093 -137053460 - L2 LINE L2 -303 3010 2440 212 337 61 10 chr11 13730878 13730976 -137052577 - L2 LINE L2 -15 3257 3155 1524 246 12 10 chr11 13731024 13731435 -137052118 - L1M4 LINE L1 -1732 4414 4003 1496 231 90 38 chr11 13731433 13731832 -137051721 - L1MDa LINE L1 -6102 438 19 * 185 318 0 56 chr11 13732323 13732430 -137051123 - L2 LINE L2 -327 2986 2886 427 228 118 84 chr11 13732530 13732793 -137050760 - MLT1K LTR MaLR -176 412 141 190 316 89 32 chr11 13732925 13733083 -137050470 - L2 LINE L2 -568 2746 2580 1797 213 197 56 chr11 13733583 13734334 -137049219 - L2 LINE L2 -557 2757 1901 216 179 0 0 chr11 13734534 13734573 -137048980 + (TTCA)n Simple_repeat Simple_repeat 3 41 0 1196 168 5 5 chr11 13734587 13734796 -137048757 + L1MB3 LINE L1 5973 6181 -2 350 272 48 40 chr11 13735275 13735400 -137048153 - L2 LINE L2 -1 3312 3187 1413 171 0 0 chr11 13736213 13736430 -137047123 - MER58A DNA MER1_type -6 218 2 347 292 120 19 chr11 13738513 13738722 -137044831 - MIR SINE MIR -13 249 20 1098 147 9 76 chr11 13738999 13739224 -137044329 - MER20 DNA MER1_type 0 219 10 237 286 31 31 chr11 13739324 13739422 -137044131 - MIR SINE MIR -90 172 75 432 296 67 64 chr11 13739425 13739696 -137043857 + L2 LINE L2 2782 3073 -240 820 248 48 32 chr11 13739949 13740199 -137043354 - MIR SINE MIR -4 258 5 823 183 0 21 chr11 13741153 13741295 -137042258 + FRAM SINE Alu 23 161 -15 533 157 49 0 chr11 13741299 13741401 -137042152 + L1ME1 LINE L1 5189 5295 -851 2540 215 48 45 chr11 13741415 13742126 -137041427 + L1ME1 LINE L1 5355 6067 -99 283 274 69 29 chr11 13742068 13742142 -137041411 + L1MA10 LINE L1 6170 6251 -83 * 276 30 0 0 chr11 13742142 13742175 -137041378 + (CA)n Simple_repeat Simple_repeat 2 34 0 283 274 69 29 chr11 13742175 13742202 -137041351 + L1MA10 LINE L1 6251 6275 -59 320 86 0 121 chr11 13742835 13742893 -137040660 + U2 snRNA snRNA 1 51 -137 1136 190 30 9 chr11 13743150 13743382 -137040171 + L1MD2 LINE L1 5760 5996 -363 361 275 0 0 chr11 13743515 13743595 -137039958 + L2 LINE L2 3234 3313 0 1975 89 0 0 chr11 13743683 13743929 -137039624 + AluSc SINE Alu 32 277 -32 254 143 20 0 chr11 13743929 13743978 -137039575 + (CAGA)n Simple_repeat Simple_repeat 2 51 0 826 179 0 0 chr11 13745099 13745222 -137038331 - FLAM_C SINE Alu -19 124 2 1962 152 0 19 chr11 13745337 13745652 -137037901 + AluJb SINE Alu 1 309 -3 1939 128 0 41 chr11 13745966 13746286 -137037267 + AluJo SINE Alu 6 312 0 473 299 109 65 chr11 13748110 13748495 -137035058 - L3 LINE CR1 -460 1117 716 324 274 26 21 chr11 13748513 13748626 -137034927 + MIR SINE MIR 32 147 -67 26 0 0 0 chr11 13750050 13750076 -137033477 + AT_rich Low_complexity Low_complexity 1 26 0 215 318 12 47 chr11 13751274 13751359 -137032194 - MIR3 SINE MIR -27 181 100 2068 205 84 91 chr11 13751548 13752340 -137031213 - L1M4 LINE L1 -1323 4823 4038 379 250 94 0 chr11 13752345 13752441 -137031112 - L1M4 LINE L1 -2368 3778 3674 371 219 17 17 chr11 13752441 13752560 -137030993 - L1M4 LINE L1 -3195 2951 2833 * 1165 253 102 0 chr11 13752559 13752963 -137030590 - L1MEc LINE L1 -2482 3733 3289 2562 223 50 51 chr11 13752964 13753783 -137029770 - L1MEc LINE L1 -3083 3132 2335 1623 119 0 4 chr11 13753783 13754030 -137029523 - AluJb SINE Alu 0 304 59 2562 223 50 51 chr11 13754030 13754739 -137028814 - L1MEc LINE L1 -3880 2335 1627 2978 263 64 21 chr11 13754870 13755137 -137028416 - L1MEc LINE L1 -4916 1299 1045 1102 132 22 44 chr11 13755137 13755364 -137028189 - L1MA5 LINE L1 -2 6298 6077 2978 263 64 21 chr11 13755364 13756341 -137027212 - L1MEc LINE L1 -5170 1045 40 774 184 178 0 chr11 13757977 13758140 -137025413 - MER58A DNA MER1_type -15 209 18 217 310 182 0 chr11 13758477 13758639 -137024914 - MIR SINE MIR -6 202 1 336 103 0 0 chr11 13759121 13759179 -137024374 + (GA)n Simple_repeat Simple_repeat 1 58 0 309 26 0 0 chr11 13759181 13759219 -137024334 + (TG)n Simple_repeat Simple_repeat 2 39 0 208 178 56 22 chr11 13759318 13759408 -137024145 + (TATAA)n Simple_repeat Simple_repeat 1 93 0 1004 322 157 17 chr11 13759415 13760046 -137023507 + L2 LINE L2 1723 2441 -873 216 217 50 67 chr11 13760052 13760112 -137023441 + L2 LINE L2 3214 3272 0 1621 243 101 20 chr11 13760229 13760758 -137022795 + MLT1G LTR MaLR 32 583 -7 344 341 8 15 chr11 13760768 13760900 -137022653 + L2 LINE L2 2560 2690 -624 1953 216 145 98 chr11 13761024 13762051 -137021502 + L2 LINE L2 2205 3313 0 535 332 103 38 chr11 13762051 13762421 -137021132 + L2 LINE L2 2812 3205 -67 1161 141 15 5 chr11 13762513 13762719 -137020834 + L1PB2 LINE L1 5941 6148 -3 758 168 16 0 chr11 13762972 13763097 -137020456 - FLAM_C SINE Alu -4 129 3 262 233 189 11 chr11 13763694 13763784 -137019769 - L2 LINE L2 0 3313 3208 1593 137 4 0 chr11 13764471 13764728 -137018825 + AluSx SINE Alu 55 312 0 308 388 39 17 chr11 13766012 13766190 -137017363 - MIR3 SINE MIR -8 200 19 2242 100 6 10 chr11 13766617 13766928 -137016625 + AluY SINE Alu 1 310 -1 1383 112 0 0 chr11 13766928 13767115 -137016438 + AluSg/x SINE Alu 126 312 0 739 180 14 0 chr11 13767353 13767492 -137016061 - AluSg/x SINE Alu -6 306 166 317 106 0 0 chr11 13767492 13767539 -137016014 + LTR3b LTR ERVK 7 53 -384 387 216 27 63 chr11 13767741 13767852 -137015701 + L2 LINE L2 3155 3261 -11 232 273 61 15 chr11 13767895 13767961 -137015592 - L2 LINE L2 -43 3270 3202 387 0 0 0 chr11 13769290 13769333 -137014220 + (CA)n Simple_repeat Simple_repeat 1 43 0 330 308 13 32 chr11 13770276 13770432 -137013121 + L2 LINE L2 2930 3082 -190 189 345 21 49 chr11 13770451 13770593 -137012960 - MIR SINE MIR -8 254 117 185 289 149 61 chr11 13771052 13771280 -137012273 + L2 LINE L2 2927 3174 -98 482 309 92 23 chr11 13771961 13772178 -137011375 + MIR SINE MIR 27 258 -4 939 248 75 16 chr11 13772918 13773240 -137010313 + MER102b DNA MER1_type 1 341 0 1620 152 0 0 chr11 13773489 13773719 -137009834 - AluSx SINE Alu -81 231 2 24 53 0 0 chr11 13774656 13774694 -137008859 + AT_rich Low_complexity Low_complexity 1 38 0 353 279 116 7 chr11 13775702 13775849 -137007704 - MIR SINE MIR -32 230 68 197 152 0 0 chr11 13776014 13776047 -137007506 - MIR SINE MIR -146 62 30 250 178 0 41 chr11 13776947 13777020 -137006533 + CT-rich Low_complexity Low_complexity 4 73 0 516 158 0 0 chr11 13777020 13777102 -137006451 - AluJ/FLAM SINE Alu -230 82 1 874 178 0 0 chr11 13777103 13777238 -137006315 - FRAM SINE Alu -22 154 20 244 320 148 33 chr11 13777925 13778047 -137005506 - L2 LINE L2 -1 3271 3136 272 266 109 47 chr11 13778322 13778450 -137005103 + L2 LINE L2 2387 2522 -792 189 0 0 0 chr11 13779066 13779087 -137004466 + (CAAAA)n Simple_repeat Simple_repeat 4 24 0 216 250 160 20 chr11 13779135 13779235 -137004318 - MIR SINE MIR -45 217 104 1811 210 20 13 chr11 13779427 13779818 -137003735 - MSTD LTR MaLR -2 394 1 349 300 66 30 chr11 13780641 13780983 -137002570 + L1ME LINE L1 49 410 -5660 189 132 38 19 chr11 13781495 13781548 -137002005 + (TA)n Simple_repeat Simple_repeat 1 54 0 291 271 79 41 chr11 13781636 13781923 -137001630 - L1MC4 LINE L1 -169 7678 7322 42552 37 2 1 chr11 13781967 13788117 -136995436 + L1PA4 LINE L1 1 6155 0 1358 162 179 23 chr11 13788120 13788466 -136995087 - MSTA LTR MaLR -27 401 2 348 259 38 35 chr11 13788511 13788721 -136994832 - L1MC4 LINE L1 -743 7218 7086 333 339 39 8 chr11 13788722 13788849 -136994704 - MIR SINE MIR -107 155 25 42 36 0 0 chr11 13788859 13788915 -136994638 + AT_rich Low_complexity Low_complexity 1 56 0 216 0 0 0 chr11 13789805 13789829 -136993724 + (T)n Simple_repeat Simple_repeat 1 24 0 26 0 0 0 chr11 13790060 13790086 -136993467 + AT_rich Low_complexity Low_complexity 1 26 0 508 306 43 17 chr11 13790323 13790724 -136992829 - L1MC4 LINE L1 -364 5757 5532 703 272 61 29 chr11 13791668 13791914 -136991639 + MIR SINE MIR 2 255 -7 312 316 111 46 chr11 13792558 13792789 -136990764 - MIR SINE MIR -7 255 13 296 357 20 0 chr11 13793107 13793205 -136990348 + MIR SINE MIR 22 121 -87 332 307 57 7 chr11 13793322 13793462 -136990091 + MIR SINE MIR 46 192 -70 263 262 116 113 chr11 13793807 13794038 -136989515 - L2 LINE L2 -18 3254 3020 2041 138 3 25 chr11 13794038 13794356 -136989197 - AluJo SINE Alu -1 311 1 263 262 116 113 chr11 13794356 13794452 -136989101 - L2 LINE L2 -252 3020 2926 955 273 104 75 chr11 13794535 13794884 -136988669 + L2 LINE L2 2214 2551 -762 2172 120 0 0 chr11 13794884 13795176 -136988377 - AluSx SINE Alu -20 292 1 750 125 0 0 chr11 13795182 13795302 -136988251 - L1MA5A LINE L1 -1 6296 6177 955 273 104 75 chr11 13795302 13796011 -136987542 + L2 LINE L2 2555 3287 -26 269 355 57 16 chr11 13796072 13796317 -136987236 - L2 LINE L2 -529 2785 2531 228 111 0 0 chr11 13796691 13796727 -136986826 + (T)n Simple_repeat Simple_repeat 1 36 0 342 0 0 0 chr11 13796917 13796955 -136986598 + (TG)n Simple_repeat Simple_repeat 1 38 0 31 26 0 0 chr11 13797095 13797133 -136986420 + AT_rich Low_complexity Low_complexity 1 38 0 333 22 0 0 chr11 13797136 13797182 -136986371 - HY1 scRNA scRNA -4 108 63 2257 99 0 3 chr11 13797182 13797475 -136986078 + AluSc SINE Alu 1 292 -17 437 289 51 19 chr11 13798388 13798544 -136985009 + MIR SINE MIR 45 205 -57 469 294 0 8 chr11 13798579 13798705 -136984848 - L2 LINE L2 -9 3304 3180 317 271 37 58 chr11 13800498 13800686 -136982867 - MIR3 SINE MIR -11 197 14 2340 105 0 0 chr11 13802537 13802841 -136980712 - AluSx SINE Alu -8 304 1 359 292 78 88 chr11 13803138 13803549 -136980004 - L3 LINE CR1 -3 1574 1168 815 259 26 17 chr11 13803575 13803807 -136979746 - MIR SINE MIR -10 252 19 330 296 7 37 chr11 13804696 13804831 -136978722 + MIR SINE MIR 98 228 -34 799 238 112 27 chr11 13804982 13805276 -136978277 + MER20B DNA MER1_type 4 322 -461 533 121 166 108 chr11 13805547 13805704 -136977849 + MER21A LTR ERV1 14 179 -752 * 756 198 31 25 chr11 13805675 13805837 -136977716 + MER39 LTR ERV1 219 381 -326 1272 177 27 9 chr11 13806084 13806304 -136977249 + MER58A DNA MER1_type 1 224 0 1798 266 77 34 chr11 13806763 13807644 -136975909 - L2 LINE L2 -168 3145 2209 292 226 0 0 chr11 13807754 13807816 -136975737 - L2 LINE L2 -2 3311 3250 25 0 0 0 chr11 13807873 13807898 -136975655 + AT_rich Low_complexity Low_complexity 1 25 0 2177 81 4 4 chr11 13808008 13808281 -136975272 - AluSg SINE Alu -37 273 1 326 305 76 36 chr11 13808523 13808746 -136974807 - L3 LINE CR1 -1 1576 1345 798 194 72 22 chr11 13808761 13808941 -136974612 - MER20 DNA MER1_type -30 189 1 340 311 82 8 chr11 13809034 13809156 -136974397 - MIR SINE MIR -115 147 17 2121 133 0 3 chr11 13809273 13809573 -136973980 - AluSx SINE Alu -13 299 1 250 329 0 0 chr11 13809747 13809832 -136973721 - L3 LINE CR1 -612 965 881 301 321 130 12 chr11 13810047 13810209 -136973344 - L3 LINE CR1 -1066 511 331 367 302 112 39 chr11 13810954 13811285 -136972268 + L1ME4a LINE L1 5760 6114 -7 663 146 92 0 chr11 13813784 13813914 -136969639 + L1MA5A LINE L1 6146 6287 -10 26 30 0 0 chr11 13813958 13813991 -136969562 + AT_rich Low_complexity Low_complexity 1 33 0 21 36 0 0 chr11 13814093 13814121 -136969432 + AT_rich Low_complexity Low_complexity 1 28 0 440 263 85 71 chr11 13814327 13814551 -136969002 + MLT1J LTR MaLR 92 318 -193 387 233 68 30 chr11 13814709 13814842 -136968711 + L1MC5 LINE L1 7771 7908 -53 311 258 103 10 chr11 13814899 13814996 -136968557 + MIR SINE MIR 57 162 -100 879 190 17 35 chr11 13815586 13815760 -136967793 + AluSc SINE Alu 130 300 -9 413 260 62 23 chr11 13817025 13817202 -136966351 - L1ME4a LINE L1 -6 6115 5932 345 241 231 5 chr11 13817187 13817390 -136966163 - L1ME4a LINE L1 -11 6110 5862 * 289 279 122 45 chr11 13817549 13817836 -136965717 - L1ME4a LINE L1 -581 5581 5273 336 272 0 22 chr11 13817877 13817969 -136965584 + MIR SINE MIR 25 114 -148 469 301 84 10 chr11 13818696 13818899 -136964654 + MIR SINE MIR 33 250 -12 189 214 0 36 chr11 13818983 13819039 -136964514 + L2 LINE L2 2309 2362 -952 212 250 83 0 chr11 13819170 13819242 -136964311 + L2 LINE L2 2482 2559 -755 657 270 216 12 chr11 13819295 13819459 -136964094 + L2 LINE L2 2477 2606 -707 243 0 0 0 chr11 13819459 13819486 -136964067 + (CA)n Simple_repeat Simple_repeat 2 28 0 657 270 216 12 chr11 13819486 13820001 -136963552 + L2 LINE L2 2606 3303 -10 453 250 33 41 chr11 13820892 13821097 -136962456 - MIR SINE MIR -48 214 7 272 183 113 0 chr11 13822596 13822667 -136960886 - MER103 DNA DNA -79 87 9 462 263 34 34 chr11 13822814 13822993 -136960560 + MIR SINE MIR 9 187 -75 636 264 51 32 chr11 13823000 13823216 -136960337 - MIR SINE MIR -1 261 42 404 296 7 14 chr11 13824314 13824456 -136959097 - MER91B DNA MER1_type -42 148 8 413 310 76 5 chr11 13825645 13825829 -136957724 + MIR SINE MIR 10 206 -56 630 148 46 0 chr11 13825951 13826059 -136957494 + MER81 DNA DNA 1 113 -1 403 248 101 19 chr11 13826060 13826283 -136957270 - MLT1I LTR MaLR -33 376 93 1896 151 42 0 chr11 13827140 13827425 -136956128 + AluJo SINE Alu 1 297 -15 1772 170 7 10 chr11 13827594 13827883 -136955670 + AluJb SINE Alu 1 288 -24 643 263 26 0 chr11 13829436 13829626 -136953927 + MIR SINE MIR 67 261 -1 301 247 54 0 chr11 13830526 13830619 -136952934 + L1 LINE L1 4733 4830 -1316 26 74 0 0 chr11 13830766 13830820 -136952733 + AT_rich Low_complexity Low_complexity 1 54 0 419 324 96 18 chr11 13830955 13831227 -136952326 - L2 LINE L2 0 3313 3021 1867 256 205 12 chr11 13831276 13832408 -136951145 - L2 LINE L2 -781 2533 1139 455 302 49 24 chr11 13832557 13832762 -136950791 + L1ME LINE L1 5536 5745 -376 218 235 0 0 chr11 13832828 13832879 -136950674 - MIR SINE MIR -58 150 100 1877 129 52 0 chr11 13839298 13839569 -136943984 + AluSx SINE Alu 12 296 -16 271 278 150 32 chr11 13840079 13840266 -136943287 - MLT1L LTR MaLR -6 609 401 234 248 105 38 chr11 13840361 13840466 -136943087 - MLT1J LTR MaLR -302 209 98 349 325 160 37 chr11 13840589 13840970 -136942583 - L3 LINE CR1 -469 1108 681 205 241 17 0 chr11 13840949 13841007 -136942546 - L2 LINE L2 0 3313 3255 * 844 133 167 7 chr11 13841223 13841373 -136942180 + MER45A DNA AcHobo 5 178 0 198 276 17 0 chr11 13841444 13841502 -136942051 - L2 LINE L2 0 3313 3255 366 23 0 0 chr11 13841579 13841622 -136941931 + (TA)n Simple_repeat Simple_repeat 1 43 0 204 281 116 33 chr11 13842059 13842180 -136941373 - L3 LINE CR1 -1269 308 178 222 172 32 151 chr11 13843330 13843423 -136940130 + MER5B DNA MER1_type 2 83 -95 248 187 80 13 chr11 13843478 13843553 -136940000 + L3 LINE CR1 1429 1508 -69 351 0 0 0 chr11 13843734 13843773 -136939780 + (CA)n Simple_repeat Simple_repeat 2 40 0 218 358 58 7 chr11 13844680 13844817 -136938736 - MIR SINE MIR -70 192 49 2166 138 0 13 chr11 13845870 13846182 -136937371 + AluSx SINE Alu 1 308 -4 918 165 82 0 chr11 13846196 13846378 -136937175 + MIR SINE MIR 41 237 -25 207 298 99 28 chr11 13846721 13846862 -136936691 - L2 LINE L2 -220 3052 2902 263 188 101 0 chr11 13847146 13847215 -136936338 - MER5B DNA MER1_type -20 158 83 963 144 51 20 chr11 13847321 13847517 -136936036 - MER33 DNA MER1_type -262 62 1 633 284 255 28 chr11 13848502 13849263 -136934290 + L2 LINE L2 1862 2795 -519 409 300 77 0 chr11 13849506 13849636 -136933917 + L2 LINE L2 3121 3260 -12 302 362 60 39 chr11 13849643 13850292 -136933261 + L2 LINE L2 2315 2977 -337 2016 147 0 3 chr11 13850965 13851265 -136932288 + AluJb SINE Alu 1 299 -13 402 143 0 0 chr11 13851546 13851602 -136931951 - MER3 DNA MER1_type -153 56 1 326 313 26 0 chr11 13851602 13851717 -136931836 - MIR3 SINE MIR -48 160 43 1669 184 3 20 chr11 13851952 13852246 -136931307 - AluJb SINE Alu -23 289 1 317 317 159 48 chr11 13852897 13853458 -136930095 + L2 LINE L2 2334 2956 -358 268 248 229 9 chr11 13853523 13853628 -136929925 + L2 LINE L2 3143 3270 -2 567 309 180 25 chr11 13855570 13856485 -136927068 + L2 LINE L2 2133 3188 -84 950 176 96 5 chr11 13857550 13857737 -136925816 + MER58A DNA MER1_type 20 223 -1 341 261 219 0 chr11 13858950 13859069 -136924484 + MIR SINE MIR 12 156 -106 5478 159 81 49 chr11 13859988 13860241 -136923312 + Charlie1a DNA MER1_type 34 278 -2483 1617 177 7 18 chr11 13860241 13860524 -136923029 + AluJo SINE Alu 1 280 -32 5478 159 81 49 chr11 13860524 13861637 -136921916 + Charlie1a DNA MER1_type 278 1443 -12 1926 135 21 0 chr11 13866108 13866396 -136917157 - AluSx SINE Alu -18 294 1 784 211 28 64 chr11 13866874 13867020 -136916533 - MER58A DNA MER1_type -2198 222 85 2026 117 38 0 chr11 13867020 13867310 -136916243 - AluSx SINE Alu -11 301 1 784 211 28 64 chr11 13867310 13867381 -136916172 - MER58A DNA MER1_type -2335 85 13 18166 28 0 1 chr11 13867713 13870659 -136912894 - L1PA2 LINE L1 -109 6046 3102 1075 234 30 0 chr11 13870887 13871122 -136912431 + MIR SINE MIR 1 242 -20 323 261 34 0 chr11 13871744 13871832 -136911721 + MLT1J1 LTR MaLR 92 182 -264 1985 110 55 14 chr11 13871961 13872251 -136911302 - AluSx SINE Alu -10 302 1 282 200 35 24 chr11 13872260 13872345 -136911208 + MLT1J1 LTR MaLR 353 438 -8 243 218 0 0 chr11 13872655 13872710 -136910843 + (CATATA)n Simple_repeat Simple_repeat 1 55 0 241 188 25 25 chr11 13872723 13872803 -136910750 + (TA)n Simple_repeat Simple_repeat 1 80 0 469 306 66 31 chr11 13873231 13873808 -136909745 + L1M4 LINE L1 4061 4656 -1490 438 231 6 99 chr11 13873929 13874111 -136909442 + L1M3e LINE L1 1 165 -6865 23 0 0 0 chr11 13875519 13875542 -136908011 + AT_rich Low_complexity Low_complexity 1 23 0 26265 92 7 14 chr11 13875749 13879674 -136903879 + L1PA5 LINE L1 11 3907 -2239 6805 64 3 12 chr11 13879674 13880975 -136902578 + L1PA5 LINE L1 4653 5945 -209 4079 80 267 20 chr11 13880975 13881634 -136901919 + LTR12 LTR ERV1 1 822 -4 6805 64 3 12 chr11 13881634 13881840 -136901713 + L1PA5 LINE L1 5945 6151 -3 343 264 23 16 chr11 13881863 13881992 -136901561 + L1M4 LINE L1 5030 5159 -987 5037 89 22 0 chr11 13882370 13883198 -136900355 - pTR5 LTR ERV1 0 2468 1520 1346 134 26 35 chr11 13883284 13883516 -136900037 - MER30 DNA MER1_type 0 230 1 199 323 217 25 chr11 13883642 13884048 -136899505 - L2 LINE L2 -1 3312 2829 289 299 0 0 chr11 13884900 13884977 -136898576 - L1MA10 LINE L1 -68 6266 6190 1865 166 3 10 chr11 13885371 13885672 -136897881 + AluJb SINE Alu 1 299 -13 353 216 173 15 chr11 13885708 13885968 -136897585 + L1M2 LINE L1 5263 5553 -747 259 389 37 9 chr11 13886750 13886858 -136896695 + L2 LINE L2 3110 3220 -52 298 340 10 0 chr11 13886863 13886963 -136896590 + L2 LINE L2 2909 3009 -263 58 0 0 0 chr11 13887038 13887096 -136896457 + AT_rich Low_complexity Low_complexity 1 58 0 557 162 118 7 chr11 13887123 13887259 -136896294 - MER3 DNA MER1_type -58 151 1 504 301 7 22 chr11 13887353 13887489 -136896064 + L2 LINE L2 3180 3313 0 23 0 0 0 chr11 13888789 13888812 -136894741 + AT_rich Low_complexity Low_complexity 1 23 0 290 24 48 0 chr11 13888988 13889030 -136894523 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 22 0 0 0 chr11 13889721 13889743 -136893810 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr11 13891445 13891473 -136892080 + AT_rich Low_complexity Low_complexity 1 28 0 30 27 0 0 chr11 13892470 13892507 -136891046 + AT_rich Low_complexity Low_complexity 1 37 0 335 204 118 112 chr11 13892521 13892673 -136890880 - MIR SINE MIR -1 261 109 1017 329 148 19 chr11 13893135 13893667 -136889886 + L3 LINE CR1 968 1568 -9 1402 204 60 11 chr11 13893775 13894059 -136889494 - AluJo SINE Alu -14 298 1 4475 120 49 0 chr11 13894193 13895203 -136888350 - L1PA12 LINE L1 -175 5993 4937 203 267 83 0 chr11 13895455 13895515 -136888038 - L2 LINE L2 0 3313 3249 1917 167 0 13 chr11 13895770 13896070 -136887483 + AluJo SINE Alu 6 301 -11 1340 142 77 8 chr11 13896748 13897009 -136886544 - L1MA10 LINE L1 -7 6327 6049 1920 149 0 0 chr11 13897102 13897391 -136886162 - AluJb SINE Alu -23 289 1 213 39 0 0 chr11 13898187 13898213 -136885340 + (TTA)n Simple_repeat Simple_repeat 1 26 0 989 180 19 167 chr11 13898216 13898527 -136885026 - AluJo SINE Alu -47 265 1 355 349 72 25 chr11 13899623 13899858 -136883695 + MIR SINE MIR 2 247 -15 260 231 0 19 chr11 13900230 13900282 -136883271 + MIR SINE MIR 16 66 -142 497 144 123 55 chr11 13900289 13900435 -136883118 + MER53 DNA DNA 1 156 -33 899 235 75 112 chr11 13900589 13901363 -136882190 + L1ME LINE L1 305 1049 -5021 929 224 76 32 chr11 13901364 13901708 -136881845 + L1ME1 LINE L1 5808 6166 0 250 258 162 12 chr11 13902303 13902470 -136881083 + L1MC/D LINE L1 5703 5894 -1914 201 167 0 0 chr11 13902500 13902536 -136881017 + A-rich Low_complexity Low_complexity 1 36 0 294 314 98 0 chr11 13902887 13902989 -136880564 + L2 LINE L2 3145 3256 -16 2349 107 0 0 chr11 13903009 13903318 -136880235 + AluSg SINE Alu 1 309 -1 726 200 0 21 chr11 13903808 13903953 -136879600 + FLAM_A SINE Alu 1 142 0 37 23 0 0 chr11 13903953 13903997 -136879556 + AT_rich Low_complexity Low_complexity 1 44 0 220 345 62 9 chr11 13903997 13904110 -136879443 - L2 LINE L2 0 3313 3195 2170 104 3 10 chr11 13904124 13904450 -136879103 - AluSq SINE Alu 0 324 1 234 143 0 0 chr11 13905247 13905282 -136878271 + MER3 DNA MER1_type 24 58 -151 365 310 22 15 chr11 13905457 13905725 -136877828 + L1MC4a LINE L1 4777 5046 -1100 296 173 92 75 chr11 13905854 13906027 -136877526 + L1MC4a LINE L1 5254 5429 -2379 709 253 161 82 chr11 13906031 13906116 -136877437 + L1MC4a LINE L1 5476 5553 -2255 2160 131 0 16 chr11 13906116 13906441 -136877112 + AluJb SINE Alu 1 312 0 709 253 161 82 chr11 13906441 13906999 -136876554 + L1MC4a LINE L1 5553 6170 -1638 824 203 0 0 chr11 13907258 13907391 -136876162 + FLAM_A SINE Alu 1 133 0 243 234 63 9 chr11 13907526 13907637 -136875916 - Charlie7 DNA MER1_type -69 2543 2427 185 277 68 95 chr11 13907741 13907889 -136875664 + MIR3 SINE MIR 38 181 -27 2539 11 0 7 chr11 13908263 13908595 -136874958 - AluYa5 SINE Alu 0 330 1 335 315 76 22 chr11 13910483 13910667 -136872886 + Charlie8 DNA MER1_type 63 256 -2161 298 316 77 47 chr11 13913085 13913319 -136870234 - L2 LINE L2 -86 3186 2946 1355 144 166 15 chr11 13914049 13914375 -136869178 + MSTA LTR MaLR 1 375 -53 2283 92 0 0 chr11 13914682 13914976 -136868577 + AluY SINE Alu 1 294 -17 686 108 100 25 chr11 13915447 13915567 -136867986 + FLAM_C SINE Alu 2 130 -3 2333 86 0 7 chr11 13915703 13916004 -136867549 - AluSx SINE Alu -11 301 3 231 88 0 0 chr11 13916019 13916053 -136867500 + (T)n Simple_repeat Simple_repeat 1 34 0 723 182 34 140 chr11 13916377 13916703 -136866850 - MER65-int LTR ERV1 -1922 2958 2009 21 36 0 0 chr11 13916703 13916731 -136866822 + AT_rich Low_complexity Low_complexity 1 28 0 264 197 0 0 chr11 13916842 13916903 -136866650 - MER65-int LTR ERV1 -2378 2493 2433 791 143 13 164 chr11 13917013 13917244 -136866309 - MER65-int LTR ERV1 -2872 3459 3264 1966 167 3 0 chr11 13917375 13917674 -136865879 + AluJo SINE Alu 13 312 0 754 211 0 0 chr11 13917714 13917847 -136865706 - FLAM_C SINE Alu 0 133 1 1163 160 19 61 chr11 13917860 13918123 -136865430 - MER65-int LTR ERV1 -3116 3215 2964 1201 194 87 85 chr11 13918123 13918629 -136864924 + MER84 LTR ERV1 1 507 0 26784 92 19 21 chr11 13918635 13919941 -136863612 + MER84-int LTR ERV1 11 1318 -3636 7294 50 9 0 chr11 13919941 13920882 -136862671 + L1PA8 LINE L1 5221 6169 -3 26784 92 19 21 chr11 13920882 13924253 -136859300 + MER84-int LTR ERV1 1318 4793 -161 2087 146 24 3 chr11 13924290 13924626 -136858927 - MER61A LTR ERV1 0 343 1 752 189 78 28 chr11 13924631 13924879 -136858674 + L1M4 LINE L1 5222 5480 -704 282 93 0 0 chr11 13924883 13924926 -136858627 + Alu SINE Alu 1 43 -260 4076 18 0 0 chr11 13925026 13925517 -136858036 + L1PA2 LINE L1 5661 6151 -4 2082 135 48 28 chr11 13925542 13925935 -136857618 - MSTA LTR MaLR -27 401 1 3202 203 41 22 chr11 13925935 13926815 -136856738 + L1 LINE L1 3791 4687 -1459 387 0 0 0 chr11 13926823 13926866 -136856687 + (TTTTA)n Simple_repeat Simple_repeat 1 43 0 8046 170 26 5 chr11 13926871 13929483 -136854070 - L1PA16 LINE L1 -32 6134 3490 868 224 50 12 chr11 13929482 13929503 -136854050 + L1MC4a LINE L1 4679 4698 -1448 * 3284 21 0 3 chr11 13929503 13929922 -136853631 + L1PA2 LINE L1 5769 6155 0 868 224 50 12 chr11 13929922 13930159 -136853394 + L1MC4a LINE L1 4698 4947 -1199 1352 244 19 27 chr11 13931140 13931509 -136852044 - MLT1F LTR MaLR 0 542 217 4375 173 43 25 chr11 13931537 13932403 -136851150 - L1MB8 LINE L1 0 6178 5282 2003 113 18 0 chr11 13932403 13932713 -136850840 - AluSx SINE Alu 0 316 2 4375 173 43 25 chr11 13932713 13933043 -136850510 - L1MB8 LINE L1 -896 5282 4959 322 288 92 16 chr11 13933049 13933239 -136850314 - MLT1G1 LTR MaLR -393 137 1 222 322 0 23 chr11 13933372 13933459 -136850094 + MIR SINE MIR 149 233 -29 1656 241 89 45 chr11 13933464 13933480 -136850073 + L1MC4a LINE L1 5321 5335 -965 2579 117 5 5 chr11 13933480 13933855 -136849698 + THE1C LTR MaLR 1 375 0 1656 241 89 45 chr11 13933855 13934154 -136849399 + L1MC4a LINE L1 5335 5107 -1193 2317 127 28 19 chr11 13934154 13934515 -136849038 + THE1B LTR MaLR 1 364 0 1656 241 89 45 chr11 13934515 13934881 -136848672 + L1MC4a LINE L1 5106 5454 -846 * 6041 89 3 12 chr11 13934879 13936076 -136847477 + L1PA8A LINE L1 4942 6128 -3 384 284 66 51 chr11 13936152 13936409 -136847144 + L1MC5 LINE L1 7668 7928 -33 331 68 0 0 chr11 13936506 13936550 -136847003 + MLT2C1 LTR ERVL 354 397 0 2338 74 0 46 chr11 13936633 13936959 -136846594 - AluY SINE Alu 0 311 1 511 298 59 41 chr11 13937961 13938300 -136845253 - L2 LINE L2 -4 3309 2965 621 269 41 101 chr11 13938337 13938653 -136844900 - L2 LINE L2 -454 2860 2564 288 272 179 5 chr11 13939029 13939213 -136844340 - MARNA DNA Mariner -205 381 166 352 289 66 25 chr11 13939416 13939537 -136844016 + L2 LINE L2 3116 3241 -31 1102 234 46 3 chr11 13939843 13940125 -136843428 + LTR16A1 LTR ERVL 160 453 -4 229 214 18 0 chr11 13940327 13940383 -136843170 + MLT1K LTR MaLR 525 581 -7 180 111 0 0 chr11 13940682 13940709 -136842844 + (A)n Simple_repeat Simple_repeat 1 27 0 2145 135 0 7 chr11 13941021 13941318 -136842235 - AluSx SINE Alu -16 296 2 671 361 121 29 chr11 13941857 13942138 -136841415 + L2 LINE L2 2245 2499 -814 759 175 7 36 chr11 13942138 13942275 -136841278 - FLAM_A SINE Alu 0 133 1 671 361 121 29 chr11 13942275 13942966 -136840587 + L2 LINE L2 2499 3313 0 225 279 99 13 chr11 13943121 13943242 -136840311 + MIR SINE MIR 16 152 -61 192 315 0 101 chr11 13943223 13943243 -136840310 + L2 LINE L2 3166 3186 -86 * 1914 154 3 10 chr11 13943243 13943554 -136839999 + AluJo SINE Alu 1 309 -3 192 315 0 101 chr11 13943554 13943622 -136839931 + L2 LINE L2 3186 3245 -27 281 128 13 39 chr11 13943710 13943788 -136839765 + (TA)n Simple_repeat Simple_repeat 2 77 0 528 215 25 0 chr11 13943873 13943994 -136839559 + L1M4 LINE L1 4680 4803 -1343 * 29176 112 17 68 chr11 13943989 13950402 -136833151 - L1PA8 LINE L1 -99 6073 1 237 116 70 0 chr11 13950419 13950462 -136833091 + L1ME LINE L1 5722 5767 -399 1052 70 0 0 chr11 13950508 13950636 -136832917 + AluY SINE Alu 176 303 -8 220 319 106 0 chr11 13950725 13950838 -136832715 - MIR SINE MIR -63 145 21 193 240 29 19 chr11 13951583 13951655 -136831898 - MIR SINE MIR -94 168 97 2656 109 3 8 chr11 13951852 13952229 -136831324 + THE1C LTR MaLR 1 375 0 7162 176 33 89 chr11 13952231 13952652 -136830901 + THE1C-int LTR MaLR 3 446 -1205 2311 107 0 19 chr11 13952652 13952969 -136830584 + AluY SINE Alu 1 311 0 7162 176 33 89 chr11 13952969 13954294 -136829259 + THE1C-int LTR MaLR 446 1651 0 2253 110 84 35 chr11 13954294 13954639 -136828914 + THE1B LTR MaLR 1 362 -2 550 167 10 29 chr11 13954639 13954741 -136828812 + THE1C LTR MaLR 46 145 -230 14663 169 19 8 chr11 13955162 13958944 -136824609 - L1PB2 LINE L1 -3 6205 2381 1305 136 0 5 chr11 13958944 13959128 -136824425 + AluJb SINE Alu 1 183 -129 2244 139 124 2 chr11 13959158 13959644 -136823909 + L1PBa LINE L1 2499 3043 -3819 862 147 0 8 chr11 13959649 13959778 -136823775 - AluSp/q SINE Alu -22 291 164 411 103 0 0 chr11 13959778 13959836 -136823717 - THE1B LTR MaLR -306 58 1 1942 95 62 7 chr11 13959838 13960143 -136823410 + L1PBa LINE L1 2120 2441 -4422 1058 159 0 0 chr11 13960144 13960295 -136823258 - AluSq/x SINE Alu -161 151 1 5963 140 43 24 chr11 13960402 13960708 -136822845 - L1PB2 LINE L1 -4423 1781 1482 2215 149 33 30 chr11 13960708 13961071 -136822482 + THE1B LTR MaLR 1 364 0 12472 103 1 0 chr11 13961071 13962649 -136820904 + THE1B-int LTR MaLR 1 1580 0 2238 138 33 33 chr11 13962651 13963013 -136820540 + THE1B LTR MaLR 3 364 0 5963 140 43 24 chr11 13963013 13964441 -136819112 - L1PB2 LINE L1 -4722 1482 8 * 7977 211 12 7 chr11 13964412 13966041 -136817512 - L1PBa LINE L1 -5223 1640 4 762 262 30 10 chr11 13966380 13966582 -136816971 + MIR SINE MIR 2 207 -55 1823 256 34 15 chr11 13966610 13967138 -136816415 - MER74B LTR ERVL -10 612 75 1536 167 84 14 chr11 13968686 13968961 -136814592 + AluJb SINE Alu 1 294 -18 201 74 0 0 chr11 13968968 13968995 -136814558 + (GGAGAA)n Simple_repeat Simple_repeat 5 31 0 2367 233 41 24 chr11 13969352 13969811 -136813742 + L1M4 LINE L1 4603 5078 -1068 2390 125 48 14 chr11 13969811 13970163 -136813390 - THE1B LTR MaLR 0 364 1 2367 233 41 24 chr11 13970163 13970368 -136813185 + L1M4 LINE L1 5078 5278 -868 43215 38 22 1 chr11 13970390 13976408 -136807145 - L1PA3 LINE L1 0 6155 13 397 173 37 0 chr11 13976407 13976488 -136807065 + L1M LINE L1 5269 5352 -826 * 227 383 39 7 chr11 13977071 13977225 -136806328 + LTR16C LTR ERVL 226 384 -107 3001 112 75 17 chr11 13978519 13979001 -136804552 - MER9 LTR ERVK -1 510 1 1977 68 11 0 chr11 13979256 13979518 -136804035 + L1P2 LINE L1 5493 5726 -428 423 286 30 14 chr11 13979634 13979780 -136803773 - MER5A DNA MER1_type -39 139 4 215 334 24 10 chr11 13979970 13980140 -136803413 + MIR SINE MIR 30 243 -19 324 331 66 18 chr11 13980194 13980360 -136803193 + MIR3 SINE MIR 14 187 -21 2509 84 0 0 chr11 13981359 13981667 -136801886 - AluSc SINE Alu 0 309 2 1796 168 10 3 chr11 13982000 13982303 -136801250 - AluJo SINE Alu -7 305 1 235 174 0 0 chr11 13982305 13982351 -136801202 - L1M4 LINE L1 -3009 3137 3092 258 258 113 13 chr11 13982871 13983022 -136800531 + L1ME4a LINE L1 5952 6117 -4 693 263 134 0 chr11 13983028 13983222 -136800331 - MIR SINE MIR -3 259 40 2006 174 0 0 chr11 13983222 13983527 -136800026 - AluJb SINE Alu -7 305 1 3621 154 73 24 chr11 13984507 13985188 -136798365 + L1MB2 LINE L1 5449 6163 -8 19475 61 3 0 chr11 13985282 13988150 -136795403 + L1PA6 LINE L1 11 2870 -3284 19475 67 4 2 chr11 13988150 13991353 -136792200 + L1PA6 LINE L1 2945 6154 0 19475 61 3 0 chr11 13991353 13991394 -136792159 + L1PA6 LINE L1 2870 6154 0 321 306 92 43 chr11 13991828 13992174 -136791379 - L2 LINE L2 -1201 2113 1751 914 279 93 64 chr11 13992232 13993126 -136790427 - L1MC4a LINE L1 -1635 6173 5254 353 348 40 54 chr11 13993474 13993770 -136789783 - L2 LINE L2 -1898 1416 1125 22219 147 28 4 chr11 13993897 13997415 -136786138 + L1MA3 LINE L1 8 3610 -3955 26877 165 20 20 chr11 13997420 13999120 -136784433 + L1PA10 LINE L1 10 1709 -4774 2836 19 0 3 chr11 13999120 13999433 -136784120 + AluYb8 SINE Alu 1 312 -6 26877 165 20 20 chr11 13999433 14004176 -136779377 + L1PA10 LINE L1 1709 6479 -4 8395 175 47 19 chr11 14004502 14006025 -136777528 + L1MA3 LINE L1 3565 5043 -2681 2046 128 7 7 chr11 14006025 14006329 -136777224 - AluSx SINE Alu -8 304 1 8395 175 47 19 chr11 14006329 14006384 -136777169 + L1MA3 LINE L1 5043 5095 -2629 2308 91 0 14 chr11 14006384 14006681 -136776872 + AluY SINE Alu 1 293 -18 8395 175 47 19 chr11 14006681 14009023 -136774530 + L1MA3 LINE L1 5095 7724 0 757 303 49 67 chr11 14009145 14009700 -136773853 - L2 LINE L2 -2401 913 369 713 252 9 52 chr11 14010090 14010300 -136773253 - MIR SINE MIR -47 215 15 1792 153 0 3 chr11 14011144 14011426 -136772127 + AluJb SINE Alu 5 285 -27 2264 110 7 3 chr11 14013231 14013539 -136770014 + AluSx SINE Alu 1 309 -3 255 79 0 0 chr11 14013904 14013942 -136769611 + (GA)n Simple_repeat Simple_repeat 1 38 0 274 371 81 8 chr11 14013971 14014230 -136769323 - LTR16C LTR ERVL -14 477 200 2407 235 37 14 chr11 14014791 14015523 -136768030 - L1M4 LINE L1 -794 5352 4604 1413 197 95 0 chr11 14015876 14016207 -136767346 - AluSg SINE Alu 0 357 1 271 352 97 22 chr11 14016455 14016722 -136766831 + L2 LINE L2 1859 2145 -1169 1999 149 0 0 chr11 14016980 14017290 -136766263 + AluSx SINE Alu 1 310 0 971 417 44 14 chr11 14018080 14018509 -136765044 + MER74B LTR ERVL 75 516 -106 734 287 31 14 chr11 14018606 14018829 -136764724 - MIR SINE MIR -35 227 1 312 276 301 4 chr11 14019694 14019933 -136763620 + L2 LINE L2 1318 1627 -1687 783 264 9 35 chr11 14019960 14020187 -136763366 + L2 LINE L2 2260 2480 -834 6928 113 20 19 chr11 14020200 14021883 -136761670 - L1MA1 LINE L1 -4 6298 4600 1084 297 145 16 chr11 14021884 14022583 -136760970 + L2 LINE L2 2464 3263 -50 354 121 0 0 chr11 14023171 14023229 -136760324 - MER58A DNA MER1_type -6 218 161 384 224 51 0 chr11 14023231 14023329 -136760224 - MER58A DNA MER1_type -4 103 1 258 282 13 0 chr11 14023346 14023424 -136760129 + MLT1J LTR MaLR 69 147 -364 1926 169 20 0 chr11 14023451 14023753 -136759800 - AluJb SINE Alu -4 308 1 233 216 0 20 chr11 14023757 14023808 -136759745 - MER20 DNA MER1_type 0 219 170 2359 143 46 29 chr11 14023816 14024293 -136759260 - L1MB7 LINE L1 -16 6168 5684 1173 160 10 0 chr11 14024295 14024495 -136759058 - L1MB7 LINE L1 -561 5623 5422 346 285 31 0 chr11 14024493 14024623 -136758930 - L1ME LINE L1 -381 5789 5656 * 992 239 44 10 chr11 14024638 14024966 -136758587 - L1ME LINE L1 -595 5569 5232 750 278 112 42 chr11 14026274 14026849 -136756704 - L1ME LINE L1 -1058 5088 4463 2181 114 0 16 chr11 14026849 14027156 -136756397 - AluSx SINE Alu -10 302 1 750 278 112 42 chr11 14027156 14027217 -136756336 - L1ME LINE L1 -1683 4463 4408 758 273 123 0 chr11 14027300 14027520 -136756033 - MIR SINE MIR -1 261 15 216 0 0 0 chr11 14027528 14027552 -136756001 + (TC)n Simple_repeat Simple_repeat 2 25 0 25 0 0 0 chr11 14028349 14028374 -136755179 + AT_rich Low_complexity Low_complexity 1 25 0 237 300 100 20 chr11 14028801 14028874 -136754679 - L2 LINE L2 0 3272 3187 1303 237 111 8 chr11 14028874 14029233 -136754320 - MSTD LTR MaLR 0 396 1 237 300 100 20 chr11 14029233 14029259 -136754294 - L2 LINE L2 -84 3188 3165 12932 209 11 4 chr11 14029692 14033527 -136750026 - L1PA15 LINE L1 0 6816 2998 575 115 11 0 chr11 14033529 14033616 -136749937 + 5S rRNA rRNA 1 88 -33 4390 231 29 35 chr11 14033617 14034874 -136748679 - L1PA15 LINE L1 -3785 3012 1748 2303 100 3 0 chr11 14034874 14035174 -136748379 + AluSg SINE Alu 1 301 -9 4390 231 29 35 chr11 14035174 14036168 -136747385 - L1PA15 LINE L1 -5049 1748 412 1933 259 29 2 chr11 14036275 14036731 -136746822 - L1PA15 LINE L1 -6319 468 1 21 0 0 0 chr11 14036744 14036765 -136746788 + AT_rich Low_complexity Low_complexity 1 21 0 225 0 0 0 chr11 14036971 14036996 -136746557 + (TA)n Simple_repeat Simple_repeat 1 25 0 529 326 81 8 chr11 14037108 14037344 -136746209 - MIR SINE MIR -3 259 7 452 255 149 37 chr11 14037717 14037878 -136745675 - MIR SINE MIR -79 183 5 2201 118 0 0 chr11 14038063 14038360 -136745193 - AluSq SINE Alu -16 297 1 582 134 41 0 chr11 14038495 14038592 -136744961 - AluSx SINE Alu -3 309 209 41290 42 2 13 chr11 14038607 14044821 -136738732 - L1PA4 LINE L1 0 6155 14 1374 166 0 22 chr11 14044821 14045050 -136738503 - AluSx SINE Alu -88 224 1 630 285 115 17 chr11 14045327 14045797 -136737756 - L1ME4a LINE L1 -295 5826 5374 1965 152 7 0 chr11 14045922 14046219 -136737334 - AluJb SINE Alu -13 299 1 2780 157 18 33 chr11 14046222 14046794 -136736759 - L1MB5 LINE L1 0 6174 5612 1203 222 30 22 chr11 14046794 14047159 -136736394 - L1MB5 LINE L1 -1403 4743 4376 1354 149 0 0 chr11 14047159 14047353 -136736200 - AluSx SINE Alu -118 194 1 1210 196 38 33 chr11 14047353 14047721 -136735832 - L1MB5 LINE L1 -2461 3685 3316 1407 248 104 11 chr11 14047726 14048186 -136735367 - L2 LINE L2 -1124 2190 1688 181 194 119 45 chr11 14048460 14048527 -136735026 + MER5A DNA MER1_type 40 111 -78 2566 110 72 5 chr11 14049115 14049516 -136734037 - MSTA LTR MaLR 0 428 1 21 36 0 0 chr11 14050544 14050572 -136732981 + AT_rich Low_complexity Low_complexity 1 28 0 496 247 89 0 chr11 14051180 14051338 -136732215 + MER96 DNA MER1_type 1 172 -3 1284 227 45 108 chr11 14051463 14052039 -136731514 + MER34 LTR ERV1 1 540 -2 3718 153 67 33 chr11 14053219 14054136 -136729417 - L1MB8 LINE L1 -17 6161 5202 960 196 0 0 chr11 14054139 14054297 -136729256 - AluJb SINE Alu -13 299 142 5057 204 77 33 chr11 14054302 14055869 -136727684 - L1MB8 LINE L1 -926 5220 3582 929 243 158 25 chr11 14056179 14056628 -136726925 - HAL1b LINE L1 -605 743 235 602 225 8 47 chr11 14057096 14057225 -136726328 - FLAM_A SINE Alu -8 125 2 557 247 100 6 chr11 14057338 14057508 -136726045 - MLT1L LTR MaLR -2 613 428 823 225 25 50 chr11 14057801 14058001 -136725552 + MLT1A1 LTR MaLR 171 365 0 243 52 17 190 chr11 14058091 14058149 -136725404 - MLT2D LTR ERVL 0 414 367 350 167 0 17 chr11 14058159 14058219 -136725334 + MER8 DNA MER2_type 2 60 -179 850 201 25 10 chr11 14058261 14058460 -136725093 + L1MD3 LINE L1 6904 7105 -890 505 229 0 0 chr11 14058470 14058566 -136724987 + MLT1F1 LTR MaLR 35 130 -437 3200 160 10 27 chr11 14058568 14059155 -136724398 + L1MD3 LINE L1 7410 7986 -9 3745 63 7 2 chr11 14059399 14059841 -136723712 - MLT2A1 LTR ERVL 0 444 1 2300 130 133 5 chr11 14059993 14060370 -136723183 - MSTA LTR MaLR -3 425 1 2139 175 66 31 chr11 14061204 14061627 -136721926 - LTR47A LTR ERVL -14 438 1 1040 203 25 98 chr11 14061628 14062040 -136721513 - MER4B-int LTR ERV1 -258 4865 4636 2148 125 26 0 chr11 14062095 14062400 -136721153 - AluSq SINE Alu 0 313 1 1685 104 16 108 chr11 14062400 14062716 -136720837 - MER4B-int LTR ERV1 -1509 5249 4963 2698 198 43 11 chr11 14062739 14063275 -136720278 - MER4B-int LTR ERV1 -1905 4853 4301 880 166 8 17 chr11 14063272 14063456 -136720097 - MER4B-int LTR ERV1 -2483 4275 1182 * 2099 138 10 3 chr11 14063465 14063770 -136719783 - AluSx SINE Alu -1 311 5 411 227 0 0 chr11 14063972 14064100 -136719453 + G-rich Low_complexity Low_complexity 1 128 0 22 0 0 0 chr11 14064810 14064832 -136718721 + GC_rich Low_complexity Low_complexity 1 22 0 737 211 21 0 chr11 14065968 14066110 -136717443 - FRAM SINE Alu -30 146 2 1894 123 9 28 chr11 14066152 14066470 -136717083 - AluSx SINE Alu 0 312 1 1939 159 94 74 chr11 14067061 14067216 -136716337 - MLT1C LTR MaLR 0 467 317 2405 125 125 10 chr11 14067216 14067600 -136715953 + MSTA LTR MaLR 1 428 0 1939 159 94 74 chr11 14067600 14067902 -136715651 - MLT1C LTR MaLR -150 317 1 26 0 0 0 chr11 14068523 14068549 -136715004 + AT_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chr11 14068665 14068688 -136714865 + AT_rich Low_complexity Low_complexity 1 23 0 262 308 14 98 chr11 14068931 14069074 -136714479 + MLT1H1 LTR MaLR 9 139 -416 23 0 0 0 chr11 14069584 14069607 -136713946 + AT_rich Low_complexity Low_complexity 1 23 0 2355 88 0 0 chr11 14069649 14069943 -136713610 + AluY SINE Alu 1 294 -17 9345 62 2 14 chr11 14069951 14071131 -136712422 + L1P LINE L1 1 1165 -4981 5982 138 5 26 chr11 14071235 14071410 -136712143 - MER4B-int LTR ERV1 -2728 4030 3853 2443 118 128 8 chr11 14071410 14071792 -136711761 + MSTA LTR MaLR 1 428 0 5982 138 5 26 chr11 14071792 14072586 -136710967 - MER4B-int LTR ERV1 -2905 3853 3081 226 278 0 44 chr11 14072596 14072686 -136710867 - L1MC4 LINE L1 -1342 6700 6615 471 213 21 7 chr11 14072690 14072831 -136710722 + (TATATG)n Simple_repeat Simple_repeat 4 146 0 22 35 0 0 chr11 14072864 14072893 -136710660 + AT_rich Low_complexity Low_complexity 1 29 0 837 185 0 60 chr11 14072903 14073129 -136710424 - AluJb SINE Alu -31 281 2 303 93 0 0 chr11 14073169 14073212 -136710341 + (TCC)n Simple_repeat Simple_repeat 3 45 0 1392 183 11 49 chr11 14073212 14073497 -136710056 - AluJo SINE Alu -38 274 1 1471 205 45 45 chr11 14073509 14074052 -136709501 - LTR49-int LTR ERV1 -1950 2936 2559 37036 97 12 12 chr11 14074111 14080262 -136703291 + L1PA6 LINE L1 11 6154 0 2072 225 96 78 chr11 14080324 14080390 -136703163 - LTR49-int LTR ERV1 -2594 2286 2223 2199 129 76 15 chr11 14080390 14080731 -136702822 - THE1B LTR MaLR 0 364 3 2072 225 96 78 chr11 14080731 14081351 -136702202 - LTR49-int LTR ERV1 -2657 2223 1616 2690 145 41 5 chr11 14081351 14081764 -136701789 + MSTA LTR MaLR 1 428 0 9798 157 40 22 chr11 14081764 14083386 -136700167 + MSTA-int LTR MaLR 1 1651 0 2553 124 70 5 chr11 14083386 14083788 -136699765 + MSTA LTR MaLR 1 428 0 2072 225 96 78 chr11 14083788 14083937 -136699616 - LTR49-int LTR ERV1 -3263 1617 751 1713 163 37 59 chr11 14084312 14084687 -136698866 - LTR47A LTR ERVL -2 450 84 1968 127 0 43 chr11 14084687 14084986 -136698567 - AluSx SINE Alu -6 306 21 205 183 33 67 chr11 14085067 14085127 -136698426 + L2 LINE L2 3210 3267 -5 207 332 106 68 chr11 14085489 14085754 -136697799 + L2 LINE L2 2825 3099 -173 2145 143 0 0 chr11 14085793 14086101 -136697452 - AluSx SINE Alu -4 308 1 1005 170 0 23 chr11 14086158 14086329 -136697224 - FRAM SINE Alu -12 164 1 445 67 22 67 chr11 14086331 14086420 -136697133 - Charlie5 DNA MER1_type -56 2556 2472 2306 98 0 3 chr11 14087871 14088167 -136695386 + AluSg SINE Alu 1 295 -15 2124 110 0 10 chr11 14088174 14088466 -136695087 + AluY SINE Alu 1 289 -22 522 288 27 27 chr11 14088552 14088736 -136694817 + MIR SINE MIR 8 191 -71 196 250 130 60 chr11 14090229 14090329 -136693224 + L2 LINE L2 3153 3259 -13 359 251 56 4 chr11 14090639 14090785 -136692768 - L1ME3 LINE L1 0 6164 6005 195 42 0 0 chr11 14091584 14091608 -136691945 + (CGG)n Simple_repeat Simple_repeat 3 26 0 25 65 0 0 chr11 14091760 14091806 -136691747 + GC_rich Low_complexity Low_complexity 1 46 0 737 211 21 0 chr11 14092944 14093086 -136690467 - FRAM SINE Alu -30 146 2 1916 125 6 28 chr11 14093128 14093447 -136690106 - AluSx SINE Alu 0 312 1 193 333 32 32 chr11 14094004 14094130 -136689423 - L2 LINE L2 -189 3083 2958 579 208 213 11 chr11 14094462 14094645 -136688908 - MIR SINE MIR 0 262 43 315 282 13 0 chr11 14094636 14094714 -136688839 - L2 LINE L2 -6 3266 3188 * 1298 178 45 25 chr11 14095175 14095417 -136688136 + AluJb SINE Alu 52 298 -14 534 254 84 33 chr11 14096159 14096372 -136687181 - MIR SINE MIR -16 246 23 30 45 0 0 chr11 14096759 14096803 -136686750 + AT_rich Low_complexity Low_complexity 1 44 0 2443 71 7 3 chr11 14096886 14097194 -136686359 + AluSg SINE Alu 1 309 -1 579 254 0 16 chr11 14097202 14097324 -136686229 + MIR SINE MIR 30 149 -59 403 226 78 10 chr11 14097808 14097910 -136685643 - L1MC5 LINE L1 -97 7864 7756 266 283 123 38 chr11 14099748 14099854 -136683699 - MIR3 SINE MIR -6 202 88 2289 71 3 0 chr11 14101125 14101408 -136682145 - AluY SINE Alu -16 295 12 21 0 0 0 chr11 14101954 14101975 -136681578 + AT_rich Low_complexity Low_complexity 1 21 0 566 270 0 0 chr11 14103122 14103248 -136680305 - FLAM_A SINE Alu -16 126 1 2439 135 54 47 chr11 14103277 14103706 -136679847 - MSTB1 LTR MaLR 0 432 1 304 71 24 0 chr11 14103909 14103951 -136679602 - MER61C LTR ERV1 0 434 392 1011 222 55 31 chr11 14104211 14104532 -136679021 + MLT1G LTR MaLR 1 284 -306 590 233 0 16 chr11 14104573 14104702 -136678851 + MLT1G LTR MaLR 429 555 0 22 0 0 0 chr11 14104747 14104769 -136678784 + AT_rich Low_complexity Low_complexity 1 22 0 1023 215 72 0 chr11 14105216 14105425 -136678128 + MER58A DNA MER1_type 1 224 0 1741 199 0 10 chr11 14105456 14105768 -136677785 - AluJb SINE Alu -3 309 1 2224 117 0 0 chr11 14105967 14106266 -136677287 + AluSx SINE Alu 1 299 -13 772 132 7 37 chr11 14106399 14106535 -136677018 - FLAM_C SINE Alu 0 133 2 282 284 68 80 chr11 14107313 14107475 -136676078 - MIR SINE MIR -75 187 28 290 254 0 0 chr11 14108778 14108841 -136674712 - MIR3 SINE MIR -8 200 138 663 135 39 0 chr11 14109410 14109514 -136674039 - HY1 scRNA scRNA -3 109 2 278 256 81 23 chr11 14109814 14109900 -136673653 - MIR SINE MIR -122 140 50 3095 19 11 0 chr11 14110600 14110965 -136672588 + L1PA4 LINE L1 5784 6152 -3 325 109 0 0 chr11 14111458 14111504 -136672049 + L2 LINE L2 3264 3309 -4 624 152 9 9 chr11 14111677 14111789 -136671764 - FLAM_A SINE Alu -4 138 27 496 204 124 26 chr11 14111884 14111997 -136671556 + MER94 DNA DNA 5 128 -6 2034 224 145 37 chr11 14112027 14112729 -136670824 - L1ME3A LINE L1 -9 6161 5536 2371 79 0 3 chr11 14112729 14113032 -136670521 - AluSx SINE Alu -10 302 1 2034 224 145 37 chr11 14113032 14113782 -136669771 - L1ME3A LINE L1 -634 5536 4431 232 81 27 0 chr11 14113824 14113861 -136669692 - L1MB5 LINE L1 -8 6166 6129 1187 180 41 132 chr11 14113863 14114257 -136669296 - MLT1A1 LTR MaLR -7 358 1 3099 184 42 17 chr11 14114257 14114679 -136668874 - L1MB5 LINE L1 -40 6134 5689 1212 160 48 35 chr11 14114679 14114743 -136668810 + MER46A DNA MER2_type 2 64 -2667 2020 125 10 0 chr11 14114743 14115032 -136668521 + AluSx SINE Alu 3 294 -18 1212 160 48 35 chr11 14115032 14115198 -136668355 + MER46A DNA MER2_type 64 235 -1 3099 184 42 17 chr11 14115198 14115418 -136668135 - L1MB5 LINE L1 -485 5689 5476 226 250 38 0 chr11 14115742 14115822 -136667731 - HAL1 LINE L1 -1600 907 825 1288 80 146 0 chr11 14115951 14116150 -136667403 + MER30 DNA MER1_type 3 230 0 293 212 129 24 chr11 14117301 14117386 -136666167 - MIR3 SINE MIR -26 182 89 216 265 59 73 chr11 14118118 14118254 -136665299 - MIR SINE MIR 0 262 129 25 31 0 0 chr11 14118766 14118798 -136664755 + AT_rich Low_complexity Low_complexity 1 32 0 892 186 149 0 chr11 14119763 14119951 -136663602 - MER20 DNA MER1_type 0 219 4 1954 139 3 7 chr11 14120023 14120325 -136663228 + AluSx SINE Alu 1 301 -11 361 330 31 21 chr11 14120840 14121031 -136662522 + L2 LINE L2 2177 2369 -945 292 252 96 52 chr11 14121074 14121189 -136662364 - L2 LINE L2 0 3313 3194 338 299 75 95 chr11 14121328 14121397 -136662156 + L2 LINE L2 2685 2754 -560 2363 65 3 3 chr11 14121397 14121691 -136661862 + AluY SINE Alu 3 296 -15 338 299 75 95 chr11 14121691 14121915 -136661638 + L2 LINE L2 2754 2972 -342 25 51 0 0 chr11 14122185 14122224 -136661329 + AT_rich Low_complexity Low_complexity 1 39 0 438 258 53 23 chr11 14122867 14122999 -136660554 + MIR SINE MIR 37 172 -90 26 0 0 0 chr11 14123822 14123848 -136659705 + AT_rich Low_complexity Low_complexity 1 26 0 942 165 18 0 chr11 14124105 14124269 -136659284 + L1MA5A LINE L1 6128 6294 -3 358 123 192 27 chr11 14124306 14124379 -136659174 + AluJb SINE Alu 43 127 -175 26 30 0 0 chr11 14124379 14124412 -136659141 + AT_rich Low_complexity Low_complexity 1 33 0 389 343 21 14 chr11 14124694 14124837 -136658716 + MIR SINE MIR 8 151 -111 21 0 0 0 chr11 14125219 14125240 -136658313 + AT_rich Low_complexity Low_complexity 1 21 0 1294 151 0 9 chr11 14126018 14126230 -136657323 - AluJb SINE Alu -3 309 100 2155 122 0 0 chr11 14126608 14126911 -136656642 + AluSq SINE Alu 1 303 -10 278 340 36 62 chr11 14127277 14127471 -136656082 - MER5A DNA MER1_type 0 189 1 208 200 0 83 chr11 14127474 14127534 -136656019 - MER5A DNA MER1_type -26 163 109 324 349 66 20 chr11 14127659 14127811 -136655742 - MER5A DNA MER1_type -22 167 9 234 210 16 16 chr11 14129040 14129102 -136654451 - L1MC/D LINE L1 -516 5817 5756 975 133 99 5 chr11 14129348 14129559 -136653994 - L1MA8 LINE L1 -3 6288 6058 503 250 125 45 chr11 14129626 14129850 -136653703 - MIR SINE MIR -5 257 16 342 269 65 43 chr11 14129929 14130115 -136653438 - L1MC/D LINE L1 -1993 5815 5626 23 54 0 0 chr11 14130493 14130530 -136653023 + AT_rich Low_complexity Low_complexity 1 37 0 1689 112 27 12 chr11 14130970 14131229 -136652324 + AluSg SINE Alu 43 305 -5 285 29 0 0 chr11 14131291 14131325 -136652228 + (CA)n Simple_repeat Simple_repeat 1 34 0 205 286 39 26 chr11 14132747 14132824 -136650729 - MIR3 SINE MIR -14 194 117 777 248 142 23 chr11 14133066 14133368 -136650185 - MER46C DNA MER2_type 0 338 1 687 290 82 48 chr11 14139160 14139594 -136643959 - MLT1G LTR MaLR -13 542 82 1442 63 0 5 chr11 14139650 14139841 -136643712 - L1PA5 LINE L1 -16 6138 5949 266 229 0 0 chr11 14139864 14139912 -136643641 - MLT1G LTR MaLR -547 48 1 1107 230 4 13 chr11 14140485 14140711 -136642842 - MER58A DNA MER1_type 0 224 1 786 226 133 99 chr11 14141484 14142035 -136641518 - MLT1G LTR MaLR -10 580 7 836 229 51 0 chr11 14142514 14142689 -136640864 + MER20 DNA MER1_type 36 219 0 2363 91 3 10 chr11 14145309 14145618 -136637935 - AluSx SINE Alu -4 308 2 236 77 26 0 chr11 14145701 14145740 -136637813 + (TA)n Simple_repeat Simple_repeat 1 40 0 698 286 152 21 chr11 14145837 14145928 -136637625 - L1MEd LINE L1 -4711 1599 1521 1624 173 16 19 chr11 14145928 14146240 -136637313 + AluJo SINE Alu 2 312 0 698 286 152 21 chr11 14146240 14147005 -136636548 - L1MEd LINE L1 -4789 1521 592 1951 128 7 13 chr11 14147109 14147413 -136636140 + AluJb SINE Alu 1 302 -10 733 200 35 25 chr11 14147500 14147700 -136635853 - MER33 DNA MER1_type -97 227 26 654 126 0 10 chr11 14147712 14147815 -136635738 + MSTA LTR MaLR 327 428 0 1270 206 60 31 chr11 14147816 14148257 -136635296 - L1ME3A LINE L1 -164 6006 5415 555 313 83 19 chr11 14148255 14148520 -136635033 + L1ME4a LINE L1 5262 5543 -2265 * 436 243 51 86 chr11 14148522 14148906 -136634647 - L1MEc LINE L1 -3845 2581 2234 265 56 0 0 chr11 14148972 14149008 -136634545 - MADE1 DNA Mariner 0 80 45 541 326 38 23 chr11 14149091 14149438 -136634115 - L1MEc LINE L1 -4584 2023 1672 339 306 45 57 chr11 14149496 14149653 -136633900 - L1MEc LINE L1 -5058 1368 1214 344 305 76 0 chr11 14150763 14150881 -136632672 - MIR3 SINE MIR -67 141 15 25 51 0 0 chr11 14153224 14153263 -136630290 + AT_rich Low_complexity Low_complexity 1 39 0 24 67 0 0 chr11 14154967 14155012 -136628541 + AT_rich Low_complexity Low_complexity 1 45 0 316 176 162 0 chr11 14155636 14155704 -136627849 + MER116 DNA Mariner 1 79 -1 244 200 67 17 chr11 14155731 14155791 -136627762 + MARNA DNA Mariner 44 106 -480 618 269 211 0 chr11 14155960 14156168 -136627385 - MIR SINE MIR -10 252 1 269 140 80 0 chr11 14156261 14156311 -136627242 - L2 LINE L2 0 3272 3219 4052 93 37 2 chr11 14156788 14157323 -136626230 - MER41A LTR ERV1 0 554 1 1135 151 32 32 chr11 14157498 14157684 -136625869 + MER5A DNA MER1_type 4 189 0 2242 113 3 0 chr11 14157790 14158092 -136625461 + AluSg SINE Alu 2 304 -6 233 225 38 38 chr11 14158092 14158172 -136625381 + L1ME4a LINE L1 5953 6032 -89 199 200 0 0 chr11 14158938 14158973 -136624580 + L2 LINE L2 3264 3298 -15 28 29 0 0 chr11 14160399 14160434 -136623119 + AT_rich Low_complexity Low_complexity 1 35 0 1965 154 10 0 chr11 14160821 14161171 -136622382 - AluSx SINE Alu 0 353 1 191 236 181 42 chr11 14161173 14161245 -136622308 - MER5A DNA MER1_type -72 117 36 31 0 0 0 chr11 14161659 14161690 -136621863 + AT_rich Low_complexity Low_complexity 1 31 0 874 167 83 44 chr11 14161690 14161894 -136621659 + AluJo SINE Alu 84 295 -17 604 217 183 6 chr11 14161949 14162129 -136621424 + MIR SINE MIR 36 247 -15 2175 108 3 7 chr11 14163094 14163389 -136620164 - AluSq SINE Alu -18 295 2 1020 240 78 6 chr11 14163696 14164121 -136619432 + LTR33 LTR ERVL 19 505 -16 2323 82 10 0 chr11 14164527 14164819 -136618734 - AluSx SINE Alu -17 295 1 362 358 98 12 chr11 14164820 14165066 -136618487 + L2 LINE L2 2454 2720 -594 25 75 0 0 chr11 14165408 14165461 -136618092 + AT_rich Low_complexity Low_complexity 1 53 0 362 299 57 67 chr11 14165542 14165736 -136617817 + MER117 DNA MER1_type 1 192 -5 326 315 63 0 chr11 14165837 14165980 -136617573 - L1MEc LINE L1 -2254 3961 3810 * 1552 253 83 98 chr11 14165976 14167103 -136616450 - L1MEc LINE L1 -4355 2041 934 1518 190 48 24 chr11 14167103 14167392 -136616161 + AluJo SINE Alu 1 296 -16 1552 253 83 98 chr11 14167392 14167536 -136616017 - L1MEc LINE L1 -5462 934 789 273 136 0 0 chr11 14167538 14167582 -136615971 - AluJ/FLAM SINE Alu -218 84 41 347 333 31 16 chr11 14167787 14167979 -136615574 - L1MEc LINE L1 -5951 445 251 647 317 117 27 chr11 14168642 14169052 -136614501 - LTR16A LTR ERVL -3 447 1 631 326 164 20 chr11 14170189 14171529 -136612024 + L2 LINE L2 1521 3056 -216 776 263 9 9 chr11 14172069 14172282 -136611271 + L1PB1 LINE L1 4 216 -6647 * 15631 179 19 21 chr11 14172259 14173185 -136610368 + L1PB1 LINE L1 1392 2319 -4548 2221 115 30 0 chr11 14173185 14173481 -136610072 - AluSg SINE Alu -5 305 1 15631 179 19 21 chr11 14173481 14174824 -136608729 + L1PB1 LINE L1 2319 3664 -3203 2144 108 0 19 chr11 14174824 14175131 -136608422 + AluY SINE Alu 1 301 -10 15631 179 19 21 chr11 14175131 14178286 -136605267 + L1PB1 LINE L1 3664 6866 -1 543 78 0 0 chr11 14178518 14178595 -136604958 + (TGGA)n Simple_repeat Simple_repeat 1 77 0 2093 136 0 22 chr11 14179139 14179456 -136604097 + AluSg SINE Alu 1 310 0 1601 149 156 53 chr11 14181378 14181828 -136601725 - LTR54B LTR ERV1 -2 496 1 194 224 0 103 chr11 14182213 14182271 -136601282 - MIR SINE MIR -88 174 123 185 280 0 0 chr11 14182369 14182419 -136601134 - MIR SINE MIR -17 245 196 1276 184 56 23 chr11 14182485 14182790 -136600763 - MER33 DNA MER1_type -9 315 1 492 336 24 64 chr11 14183875 14184170 -136599383 - MLT1K LTR MaLR -3 585 303 24 32 0 0 chr11 14184488 14184519 -136599034 + AT_rich Low_complexity Low_complexity 1 31 0 233 329 0 0 chr11 14184602 14184684 -136598869 - L3 LINE CR1 -1071 506 425 702 195 39 95 chr11 14184714 14184945 -136598608 + LTR33 LTR ERVL 4 221 -300 558 254 34 23 chr11 14185003 14185180 -136598373 + LTR33 LTR ERVL 334 512 -9 416 330 91 17 chr11 14185185 14185415 -136598138 - L3 LINE CR1 -1188 389 143 665 301 23 30 chr11 14185465 14185727 -136597826 - MLT1I LTR MaLR -4 405 146 281 140 120 0 chr11 14186199 14186249 -136597304 + L2 LINE L2 3258 3313 0 262 266 55 55 chr11 14187300 14187409 -136596144 - MIR SINE MIR -104 158 50 582 333 72 7 chr11 14187530 14187821 -136595732 + L2 LINE L2 2366 2675 -639 328 333 78 0 chr11 14188431 14188560 -136594993 + L2 LINE L2 3134 3272 0 191 272 12 0 chr11 14188565 14188646 -136594907 + (TA)n Simple_repeat Simple_repeat 2 83 0 2956 103 67 30 chr11 14188692 14189158 -136594395 - MER31A LTR ERV1 -2 483 1 1998 162 0 0 chr11 14189446 14189743 -136593810 + AluSx SINE Alu 1 297 -15 1774 130 6 101 chr11 14189873 14190211 -136593342 - AluJb SINE Alu -6 306 1 3220 158 112 37 chr11 14190944 14191620 -136591933 - LTR8A LTR ERV1 0 727 1 674 221 79 83 chr11 14191820 14192074 -136591479 + MLT1K LTR MaLR 334 586 -2 464 222 140 97 chr11 14192641 14192920 -136590633 - MER102b DNA MER1_type -4 337 47 767 258 74 68 chr11 14193212 14193685 -136589868 + MLT1K LTR MaLR 1 476 0 2245 103 17 0 chr11 14194318 14194618 -136588935 - AluSx SINE Alu -7 305 1 719 312 36 8 chr11 14196053 14196306 -136587247 - MIR SINE MIR 0 262 3 244 193 0 0 chr11 14196524 14196581 -136586972 - Charlie7 DNA MER1_type -2447 165 109 218 31 0 31 chr11 14196581 14196613 -136586940 + (TAAA)n Simple_repeat Simple_repeat 1 31 0 5769 146 48 6 chr11 14196766 14197348 -136586205 + L1PA16 LINE L1 4675 5231 -935 236 53 26 0 chr11 14197348 14197386 -136586167 + (CAA)n Simple_repeat Simple_repeat 1 39 0 5769 146 48 6 chr11 14197386 14198235 -136585318 + L1PA16 LINE L1 5231 6163 -3 2451 136 62 14 chr11 14198461 14198896 -136584657 - MLT1C LTR MaLR 0 467 12 1180 203 5 5 chr11 14198986 14199203 -136584350 - MER20 DNA MER1_type 0 219 3 2198 179 126 49 chr11 14199594 14200184 -136583369 - L1MA10 LINE L1 -1 6333 5553 2336 75 3 28 chr11 14200184 14200530 -136583023 + LTR7 LTR ERV1 90 410 -40 184 0 0 88 chr11 14200535 14200569 -136582984 + (CAAAA)n Simple_repeat Simple_repeat 5 35 0 1496 158 28 47 chr11 14200571 14201019 -136582534 - L1M4 LINE L1 -634 5550 5100 742 229 126 22 chr11 14201194 14201425 -136582128 + MIR SINE MIR 4 258 -4 186 245 0 0 chr11 14201440 14201489 -136582064 + L2 LINE L2 3222 3270 -2 2267 105 3 0 chr11 14202086 14202382 -136581171 - AluSp SINE Alu -14 299 3 1645 164 3 11 chr11 14202972 14203180 -136580373 + L1MB3 LINE L1 5579 5786 -397 1970 176 46 0 chr11 14203180 14203509 -136580044 + MER2 DNA MER2_type 1 344 0 1645 164 3 11 chr11 14203509 14203587 -136579966 + L1MB3 LINE L1 5786 5863 -320 787 165 86 13 chr11 14204284 14204491 -136579062 + MER106B DNA MER1_type 1 1058 -1 27 49 0 0 chr11 14204885 14204926 -136578627 + AT_rich Low_complexity Low_complexity 1 41 0 452 240 82 53 chr11 14205015 14205148 -136578405 - MIR SINE MIR -67 195 54 1336 189 120 63 chr11 14205148 14205514 -136578039 - MLT1B LTR MaLR -2 388 2 452 240 82 53 chr11 14205514 14205551 -136578002 - MIR SINE MIR -208 54 20 502 339 32 29 chr11 14205739 14206163 -136577390 + L2 LINE L2 2560 3059 -213 1616 164 22 50 chr11 14206237 14206397 -136577156 - MLT1A1 LTR MaLR -49 316 168 1993 122 3 10 chr11 14206397 14206693 -136576860 - AluSx SINE Alu -18 294 1 1616 164 22 50 chr11 14206693 14206850 -136576703 - MLT1A1 LTR MaLR -197 168 8 315 326 22 14 chr11 14208082 14208220 -136575333 - L1ME LINE L1 -391 5730 5592 1801 158 11 3 chr11 14208343 14208628 -136574925 + AluJo SINE Alu 1 287 -25 542 232 7 21 chr11 14209002 14209144 -136574409 - MARNA DNA Mariner -124 462 323 1354 244 176 19 chr11 14209233 14209818 -136573735 - LTR50 LTR ERVL -116 679 3 310 303 101 0 chr11 14209822 14209941 -136573612 - MIR SINE MIR -28 234 104 2288 138 24 27 chr11 14210083 14210459 -136573094 + THE1C LTR MaLR 1 375 0 418 315 36 0 chr11 14210775 14210886 -136572667 - MIR SINE MIR -112 150 36 361 283 173 16 chr11 14210951 14211140 -136572413 - MIR SINE MIR -27 235 17 406 195 195 6 chr11 14211140 14211293 -136572260 - MER5A DNA MER1_type 0 189 4 547 199 42 2 chr11 14212506 14212641 -136570912 - L1ME2 LINE L1 -308 5856 5730 628 269 16 33 chr11 14212642 14212824 -136570729 + MLT1H LTR MaLR 134 312 -237 465 212 26 35 chr11 14212814 14212927 -136570626 + MLT1H LTR MaLR 438 549 0 * 192 40 0 0 chr11 14213589 14213614 -136569939 + (TG)n Simple_repeat Simple_repeat 2 26 0 259 178 14 14 chr11 14213718 14213791 -136569762 + (TA)n Simple_repeat Simple_repeat 1 73 0 1338 243 11 0 chr11 14213869 14214136 -136569417 - MER115 DNA AcHobo -6 687 418 1621 198 14 3 chr11 14214177 14214460 -136569093 + MLT1A1 LTR MaLR 80 365 0 828 321 31 42 chr11 14214492 14214779 -136568774 - MER115 DNA AcHobo -338 355 72 336 275 160 42 chr11 14214827 14215547 -136568006 - L1M4 LINE L1 -2334 3812 3008 495 186 58 0 chr11 14216025 14216111 -136567442 - LTR50 LTR ERVL -696 99 9 306 295 116 50 chr11 14216290 14216531 -136567022 + L1ME3A LINE L1 680 936 -5269 205 26 26 51 chr11 14216571 14216610 -136566943 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 38127 36 26 3 chr11 14216610 14222045 -136561508 - L1PA3 LINE L1 -13 6142 578 718 76 0 0 chr11 14222012 14222104 -136561449 - L1PA3 LINE L1 -6048 98 7 * 225 216 189 0 chr11 14222151 14222225 -136561328 + L1ME3A LINE L1 1027 1114 -5091 2352 141 141 65 chr11 14222340 14222689 -136560864 - MLT2B1 LTR ERVL -10 510 114 6810 45 5 22 chr11 14222689 14223494 -136560059 + L1PA5 LINE L1 5361 6151 -3 2352 141 141 65 chr11 14223494 14223618 -136559935 - MLT2B1 LTR ERVL -406 114 1 779 275 112 30 chr11 14223632 14223963 -136559590 + L1ME3A LINE L1 1261 1648 -4748 2273 159 34 0 chr11 14223963 14224315 -136559238 - THE1B LTR MaLR 0 364 1 779 275 112 30 chr11 14224315 14224485 -136559068 + L1ME3A LINE L1 1648 1803 -4593 23 0 0 0 chr11 14224504 14224527 -136559026 + AT_rich Low_complexity Low_complexity 1 23 0 475 290 201 10 chr11 14224729 14225043 -136558510 + L1ME3A LINE L1 2150 2523 -3873 3914 245 98 53 chr11 14225077 14225211 -136558342 + L1ME3A LINE L1 3062 3189 -3042 1862 131 16 32 chr11 14225211 14225524 -136558029 + AluJb SINE Alu 5 312 0 3914 245 98 53 chr11 14225524 14226218 -136557335 + L1ME3A LINE L1 3189 3850 -2381 2226 170 11 22 chr11 14226218 14226583 -136556970 + MLT1A1 LTR MaLR 4 364 -1 3914 245 98 53 chr11 14226583 14227338 -136556215 + L1ME3A LINE L1 3850 4570 -1661 585 112 22 0 chr11 14227338 14227427 -136556126 - L1PA15 LINE L1 -7 6158 6068 3914 245 98 53 chr11 14227427 14228021 -136555532 + L1ME3A LINE L1 4570 5355 -876 330 26 0 0 chr11 14228021 14228060 -136555493 + (TG)n Simple_repeat Simple_repeat 2 40 0 3914 245 98 53 chr11 14228060 14228171 -136555382 + L1ME3A LINE L1 5355 5460 -771 1007 110 41 0 chr11 14228171 14228316 -136555237 + LTR29 LTR ERV1 395 545 -77 422 172 0 0 chr11 14228418 14228482 -136555071 - FLAM SINE Alu -27 116 53 4791 148 42 54 chr11 14228611 14229460 -136554093 + L1MB2 LINE L1 5006 5822 -349 1467 179 13 60 chr11 14229460 14229761 -136553792 + AluJo SINE Alu 11 297 -15 4791 148 42 54 chr11 14229761 14230107 -136553446 + L1MB2 LINE L1 5822 6171 0 1563 247 76 39 chr11 14230126 14230390 -136553163 + L1ME3A LINE L1 5447 5700 -539 1640 217 133 7 chr11 14230390 14230805 -136552748 - MLT1C LTR MaLR 0 467 1 1563 247 76 39 chr11 14230805 14231079 -136552474 + L1ME3A LINE L1 5700 6005 -234 440 303 32 32 chr11 14231158 14231346 -136552207 + L1ME3A LINE L1 6031 6218 -21 242 364 21 50 chr11 14232312 14232452 -136551101 + L2 LINE L2 3137 3272 0 695 266 142 20 chr11 14232617 14233042 -136550511 - L2 LINE L2 -172 3141 2667 849 230 6 0 chr11 14233055 14233233 -136550320 + MER69 DNA AcHobo 525 703 -1823 3687 196 94 26 chr11 14233259 14234103 -136549450 + MER69 DNA AcHobo 1456 2380 -146 1727 166 10 36 chr11 14234103 14234411 -136549142 - AluJo SINE Alu -12 300 1 3687 196 94 26 chr11 14234411 14234564 -136548989 + MER69 DNA AcHobo 2380 2521 -5 374 185 7 141 chr11 14234593 14234647 -136548906 - L2 LINE L2 -1004 2310 2250 2808 91 14 0 chr11 14234647 14234997 -136548556 - THE1A LTR MaLR 0 355 1 12329 97 8 1 chr11 14234997 14236563 -136546990 - THE1A-int LTR MaLR 0 1580 3 2848 75 11 0 chr11 14236567 14236916 -136546637 - THE1A LTR MaLR -2 353 1 374 185 7 141 chr11 14236916 14236990 -136546563 - L2 LINE L2 -1066 2248 2194 445 162 0 14 chr11 14236990 14237064 -136546489 + ORSL DNA AcHobo 1 73 -202 1138 216 52 22 chr11 14237066 14237297 -136546256 + Tigger5 DNA MER2_type 1 238 -2085 * 1219 111 0 0 chr11 14237287 14237458 -136546095 + Tigger5 DNA MER2_type 2085 2255 -68 407 275 50 25 chr11 14237463 14237583 -136545970 - L2 LINE L2 0 3313 3191 228 171 24 0 chr11 14237610 14237651 -136545902 + Tigger5 DNA MER2_type 14 55 -2268 440 141 115 0 chr11 14237661 14237739 -136545814 + Tigger5 DNA MER2_type 2237 2323 0 255 61 0 0 chr11 14237740 14237773 -136545780 + (CA)n Simple_repeat Simple_repeat 2 34 0 679 173 0 0 chr11 14237833 14237937 -136545616 + ORSL DNA AcHobo 169 272 -3 479 274 28 0 chr11 14237937 14238043 -136545510 - L2 LINE L2 -1113 2201 2093 1373 223 177 157 chr11 14238329 14239025 -136544528 - L2 LINE L2 -1223 2091 1173 402 215 48 108 chr11 14239025 14239212 -136544341 + MER69A DNA AcHobo 1 177 0 1373 223 177 157 chr11 14239212 14239631 -136543922 - L2 LINE L2 -2141 1173 764 1321 172 40 73 chr11 14239632 14239874 -136543679 + MER89 LTR ERV1 1 249 -310 2315 111 0 0 chr11 14239874 14240180 -136543373 + AluSg SINE Alu 1 306 -4 1321 172 40 73 chr11 14240180 14240360 -136543193 + MER89 LTR ERV1 249 506 -53 1982 289 34 40 chr11 14240375 14241106 -136542447 - L2 LINE L2 -2548 766 40 225 250 107 0 chr11 14241341 14241397 -136542156 + L2 LINE L2 3207 3268 -4 810 214 26 34 chr11 14241817 14242051 -136541502 - MER93b LTR ERV1 -2 371 140 324 275 198 18 chr11 14242299 14242466 -136541087 - L3 LINE CR1 -27 1550 1354 33132 37 1 0 chr11 14242782 14247537 -136536016 - L1PA4 LINE L1 -3 6152 1393 247 326 155 2 chr11 14248241 14248397 -136535156 + MIR SINE MIR 6 186 -76 566 248 50 134 chr11 14248414 14248773 -136534780 - L2 LINE L2 -2 3311 2983 632 229 392 10 chr11 14248887 14249193 -136534360 - L2 LINE L2 -668 2646 2224 1752 230 100 26 chr11 14249725 14250217 -136533336 - MLT1F1 LTR MaLR -2 565 38 24 0 0 0 chr11 14250303 14250327 -136533226 + AT_rich Low_complexity Low_complexity 1 24 0 219 36 0 0 chr11 14250332 14250360 -136533193 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 2392 15 0 0 chr11 14250363 14250632 -136532921 - L1HS LINE L1 -2 6153 5885 * 3663 10 0 0 chr11 14250628 14251027 -136532526 + L1HS LINE L1 5495 5893 -262 890 222 6 0 chr11 14251290 14251461 -136532092 + MER74A LTR ERVL 1 172 -386 1796 184 35 27 chr11 14251673 14252048 -136531505 + MER74A LTR ERVL 177 554 -4 9158 64 3 2 chr11 14252723 14253793 -136529760 - MER11C LTR ERVK 0 1071 1 794 254 113 71 chr11 14254414 14254928 -136528625 - MLT1H LTR MaLR -4 545 12 1453 211 68 9 chr11 14255018 14255354 -136528199 + MLT1A1 LTR MaLR 10 365 0 3262 112 0 23 chr11 14256121 14256595 -136526958 - L1PA13 LINE L1 -5 6158 5696 213 269 135 31 chr11 14256600 14256759 -136526794 - MIR SINE MIR -82 180 1 413 89 0 0 chr11 14259008 14259064 -136524489 + MLT2D LTR ERVL 1 56 -358 313 218 81 0 chr11 14259063 14259150 -136524403 + MLT2D LTR ERVL 317 410 -4 * 400 243 69 28 chr11 14259713 14259857 -136523696 + MIR SINE MIR 77 226 -36 359 314 57 28 chr11 14259954 14260155 -136523398 + MIR SINE MIR 36 240 -22 203 305 0 17 chr11 14260449 14260508 -136523045 + GA-rich Low_complexity Low_complexity 2 59 0 1829 200 108 36 chr11 14261504 14261975 -136521578 - MLT1D LTR MaLR 0 505 1 2099 128 0 7 chr11 14262050 14262348 -136521205 + AluSx SINE Alu 1 296 -16 309 294 116 0 chr11 14263787 14263933 -136519620 + MIR SINE MIR 93 255 -7 241 318 0 0 chr11 14265669 14265732 -136517821 + MLT1J1 LTR MaLR 331 393 -53 370 256 168 48 chr11 14267308 14267580 -136515973 - L1MC4a LINE L1 -188 5933 5620 1413 229 35 50 chr11 14267917 14268315 -136515238 + MLT1I LTR MaLR 18 409 0 2724 23 3 0 chr11 14269056 14269358 -136514195 + AluY SINE Alu 1 303 -8 291 296 102 23 chr11 14269601 14269739 -136513814 - MER112 DNA MER1_type -4 256 130 1595 169 0 25 chr11 14269739 14270023 -136513530 - AluJb SINE Alu 0 312 36 291 296 102 23 chr11 14270023 14270057 -136513496 - MER112 DNA MER1_type -130 130 100 243 0 0 0 chr11 14270057 14270084 -136513469 + (TG)n Simple_repeat Simple_repeat 2 28 0 291 296 102 23 chr11 14270084 14270126 -136513427 - MER112 DNA MER1_type -160 100 24 275 131 16 33 chr11 14271501 14271562 -136511991 - L1MC1 LINE L1 0 6333 6274 1305 114 0 0 chr11 14271653 14271828 -136511725 - AluSg/x SINE Alu 0 310 136 180 0 0 0 chr11 14272887 14272907 -136510646 + (TTA)n Simple_repeat Simple_repeat 2 21 0 211 292 42 10 chr11 14272921 14273017 -136510536 - MIR SINE MIR -132 130 32 188 284 59 49 chr11 14273984 14274086 -136509467 + L2 LINE L2 1164 1266 -2048 340 246 32 32 chr11 14274394 14274520 -136509033 - MIR SINE MIR -12 250 125 554 278 68 45 chr11 14274771 14275037 -136508516 - MLT1K LTR MaLR 0 588 317 711 203 0 7 chr11 14275373 14275516 -136508037 + L1MB7 LINE L1 5981 6122 -62 971 203 0 11 chr11 14276050 14276237 -136507316 + L1MB8 LINE L1 5983 6167 -11 723 208 0 0 chr11 14276418 14276548 -136507005 + FLAM_C SINE Alu 3 132 -11 1481 184 31 27 chr11 14276566 14276860 -136506693 + AluJo SINE Alu 6 300 -12 259 254 17 0 chr11 14276877 14276936 -136506617 + L2 LINE L2 3223 3282 -31 1014 224 72 99 chr11 14276936 14277458 -136506095 + MLT1H LTR MaLR 1 549 0 1999 190 3 6 chr11 14278142 14278490 -136505063 + MLT1A1 LTR MaLR 19 365 0 472 184 122 10 chr11 14279077 14279175 -136504378 - MER81 DNA DNA -1 113 5 303 235 24 12 chr11 14279268 14279353 -136504200 + MIR SINE MIR 128 213 -49 238 348 0 11 chr11 14279894 14279986 -136503567 + MER5A DNA MER1_type 95 185 -4 191 345 53 18 chr11 14279984 14280097 -136503456 + L2 LINE L2 3144 3260 -12 * 257 295 152 9 chr11 14281355 14281460 -136502093 + L2 LINE L2 3151 3270 -2 280 232 49 49 chr11 14281483 14281565 -136501988 - MIR SINE MIR -118 144 63 2469 119 86 0 chr11 14282222 14282616 -136500937 - MSTA LTR MaLR 0 428 1 547 224 22 30 chr11 14282672 14282806 -136500747 - MER117 DNA MER1_type -61 136 4 2243 12 0 0 chr11 14285315 14285567 -136497986 - L1P1 LINE L1 -594 5561 5310 1365 53 29 0 chr11 14285567 14285733 -136497820 + L1PA3 LINE L1 5980 6155 0 603 247 28 22 chr11 14285744 14285922 -136497631 - Charlie8 DNA MER1_type -2152 265 87 2039 137 7 13 chr11 14286117 14286424 -136497129 - AluJo SINE Alu -7 305 1 431 242 85 20 chr11 14286865 14287018 -136496535 - HsTC2 DNA Tc2 -1009 889 727 24 32 0 0 chr11 14287117 14287148 -136496405 + AT_rich Low_complexity Low_complexity 1 31 0 239 316 84 0 chr11 14287567 14287662 -136495891 - MIR SINE MIR -79 183 81 864 194 10 36 chr11 14287895 14288091 -136495462 - L1PB4 LINE L1 -1 6155 5965 2061 155 3 18 chr11 14288143 14288485 -136495068 + MER1B DNA MER1_type 1 337 0 566 256 109 14 chr11 14288935 14289146 -136494407 - L1M4 LINE L1 -2448 3698 3468 21 26 0 26 chr11 14289146 14289165 -136494388 + AT_rich Low_complexity Low_complexity 1 19 -19 12525 27 0 0 chr11 14289165 14291378 -136492175 - L1PA3 LINE L1 0 6155 3943 21 26 0 26 chr11 14291378 14291397 -136492156 + AT_rich Low_complexity Low_complexity 19 38 0 1211 253 35 59 chr11 14291401 14291892 -136491661 + L1M4 LINE L1 3689 4167 -1979 1111 234 31 0 chr11 14291894 14292184 -136491369 + L1MC3 LINE L1 7324 7622 -163 953 169 0 0 chr11 14292313 14292494 -136491059 - FRAM SINE Alu 0 185 5 253 210 16 16 chr11 14292965 14293027 -136490526 - MER103 DNA DNA -92 74 13 22 0 0 0 chr11 14293472 14293494 -136490059 + AT_rich Low_complexity Low_complexity 1 22 0 2530 127 6 3 chr11 14293683 14294046 -136489507 - THE1B LTR MaLR 0 364 1 858 302 109 9 chr11 14294109 14294660 -136488893 - L2 LINE L2 -2 3311 2707 395 350 14 32 chr11 14295132 14295352 -136488201 + L2 LINE L2 2065 2280 -1034 1785 174 3 7 chr11 14295352 14295651 -136487902 - AluSx SINE Alu -10 302 5 190 266 62 62 chr11 14295687 14295800 -136487753 + L2 LINE L2 3200 3312 -1 684 275 153 14 chr11 14295807 14296251 -136487302 + L2 LINE L2 553 1058 -2256 195 284 53 32 chr11 14296265 14296360 -136487193 - L2 LINE L2 -42 3230 3134 261 83 0 0 chr11 14297537 14297573 -136485980 + (TG)n Simple_repeat Simple_repeat 1 36 0 * 360 0 0 0 chr11 14297572 14297612 -136485941 + (GA)n Simple_repeat Simple_repeat 1 40 0 1615 178 16 33 chr11 14297850 14298216 -136485337 - L1MA4 LINE L1 -5 6295 5936 638 170 9 0 chr11 14298230 14298342 -136485211 - FLAM_A SINE Alu -11 131 19 413 317 6 49 chr11 14298738 14298902 -136484651 - MER117 DNA MER1_type 0 197 41 544 293 19 56 chr11 14300474 14300689 -136482864 + MIR SINE MIR 56 262 0 219 293 13 13 chr11 14300786 14300861 -136482692 + CT-rich Low_complexity Low_complexity 4 78 0 1891 102 55 0 chr11 14301075 14301364 -136482189 + AluSg SINE Alu 15 317 0 475 268 118 18 chr11 14301578 14301798 -136481755 - MIR SINE MIR 0 262 21 282 291 34 8 chr11 14302278 14302395 -136481158 + MIR SINE MIR 134 253 -9 200 143 24 24 chr11 14302412 14302454 -136481099 + GA-rich Low_complexity Low_complexity 2 43 0 187 306 139 29 chr11 14304663 14304836 -136478717 - L2 LINE L2 -863 2451 2260 694 289 43 30 chr11 14305498 14305733 -136477820 + MIR SINE MIR 18 255 -7 231 175 12 125 chr11 14307298 14307378 -136476175 + MIR SINE MIR 69 139 -69 394 264 9 0 chr11 14307491 14307597 -136475956 + MER94 DNA DNA 4 110 -24 341 189 54 0 chr11 14307796 14307870 -136475683 - MER53 DNA DNA -2 187 110 266 115 77 39 chr11 14308085 14308137 -136475416 - L1MB7 LINE L1 0 6184 6131 227 394 37 11 chr11 14308364 14308552 -136475001 - L2 LINE L2 -236 3036 2844 201 333 40 30 chr11 14308570 14308669 -136474884 - L2 LINE L2 -855 2459 2360 347 276 10 0 chr11 14309200 14309298 -136474255 - L1ME4a LINE L1 -66 6055 5957 1129 207 5 0 chr11 14309455 14309663 -136473890 - MER3 DNA MER1_type 0 209 1 1325 254 112 74 chr11 14309768 14310380 -136473173 - L1ME3A LINE L1 -13 6157 5569 1956 133 177 11 chr11 14310380 14310562 -136472991 + MSTA LTR MaLR 1 151 -277 189 0 0 0 chr11 14310562 14310583 -136472970 + (TC)n Simple_repeat Simple_repeat 1 21 0 1956 133 177 11 chr11 14310583 14310767 -136472786 + MSTA LTR MaLR 151 428 0 1325 254 112 74 chr11 14310767 14311444 -136472109 - L1ME3A LINE L1 -601 5569 4805 983 207 103 0 chr11 14311444 14311647 -136471906 + MER58A DNA MER1_type 1 224 0 1325 254 112 74 chr11 14311647 14311817 -136471736 - L1ME3A LINE L1 -1365 4805 4643 22 35 0 0 chr11 14311822 14311851 -136471702 + AT_rich Low_complexity Low_complexity 1 29 0 411 255 21 28 chr11 14311857 14311998 -136471555 - L1ME4a LINE L1 -218 5903 5764 347 301 45 0 chr11 14312059 14312192 -136471361 + L1ME LINE L1 5598 5736 -385 240 125 0 25 chr11 14312324 14312364 -136471189 - tRNA-Gly-GGA tRNA tRNA -36 39 1 392 292 10 0 chr11 14313386 14313482 -136470071 + MER5B DNA MER1_type 50 146 -32 550 316 71 15 chr11 14313792 14313988 -136469565 - MIR SINE MIR -30 232 26 280 270 0 0 chr11 14314037 14314100 -136469453 + MIR SINE MIR 197 259 -3 1518 181 26 0 chr11 14316110 14316380 -136467173 - L1MD3 LINE L1 0 7995 7719 854 136 0 0 chr11 14316399 14316517 -136467036 + FLAM_C SINE Alu 1 118 -15 12266 42 2 9 chr11 14316545 14318744 -136464809 - L1PA5 LINE L1 -5 6149 3960 384 181 0 0 chr11 14319904 14319987 -136463566 + (TG)n Simple_repeat Simple_repeat 2 84 0 498 323 20 92 chr11 14320093 14320396 -136463157 - L2 LINE L2 -27 3245 2965 323 233 108 34 chr11 14320404 14320580 -136462973 + LTR33 LTR ERVL 27 215 -306 1081 300 44 50 chr11 14320682 14321246 -136462307 + MER115 DNA AcHobo 133 693 0 314 194 58 48 chr11 14321315 14321418 -136462135 + LTR33 LTR ERVL 415 518 -3 209 69 0 0 chr11 14321424 14321453 -136462100 - L2 LINE L2 -305 2967 2939 261 57 0 0 chr11 14323294 14323329 -136460224 + (GA)n Simple_repeat Simple_repeat 1 35 0 264 271 56 56 chr11 14323626 14323770 -136459783 + HAL1 LINE L1 1464 1607 -900 972 270 124 45 chr11 14323910 14324655 -136458898 - L2 LINE L2 -2 3311 2517 251 307 64 14 chr11 14324667 14324807 -136458746 + HAL1b LINE L1 1187 1333 -15 798 300 108 13 chr11 14325073 14325461 -136458092 - LTR16A LTR ERVL 0 450 1 608 284 130 5 chr11 14325498 14325706 -136457847 + MIR SINE MIR 27 260 -2 2078 129 14 0 chr11 14325762 14326049 -136457504 - AluJo SINE Alu -21 291 1 2732 121 25 39 chr11 14329652 14330090 -136453463 - MSTB1 LTR MaLR 0 432 1 1112 193 10 5 chr11 14330091 14330298 -136453255 - MIR SINE MIR -5 257 50 476 294 69 36 chr11 14330623 14331041 -136452512 + L1ME4a LINE L1 2670 3101 -3045 694 101 0 0 chr11 14331096 14331185 -136452368 - 5S rRNA rRNA -31 90 2 281 325 25 25 chr11 14331574 14331731 -136451822 + MLT1J LTR MaLR 347 503 -8 355 305 51 25 chr11 14332343 14332461 -136451092 - LTR33A LTR ERVL -345 178 58 399 297 42 18 chr11 14332678 14332843 -136450710 - LTR33 LTR ERVL -22 499 331 1529 210 82 2 chr11 14332843 14333286 -136450267 + MLT1F LTR MaLR 1 465 -77 1829 289 75 13 chr11 14333354 14333969 -136449584 - MLT2F LTR ERVL -10 653 1 957 307 52 40 chr11 14334002 14334669 -136448884 + L1ME4a LINE L1 3739 4414 -1732 1630 226 9 0 chr11 14334671 14335012 -136448541 - L1MC4 LINE L1 -467 7575 7232 629 305 93 28 chr11 14335030 14335427 -136448126 + L1ME4a LINE L1 5491 5913 -208 21 82 0 0 chr11 14335546 14335595 -136447958 + AT_rich Low_complexity Low_complexity 1 49 0 2819 106 48 14 chr11 14336040 14336454 -136447099 + MSTA LTR MaLR 1 428 0 282 289 178 22 chr11 14336475 14336610 -136446943 + MIR3 SINE MIR 46 201 -7 224 238 32 16 chr11 14337370 14337433 -136446120 - MIR SINE MIR -128 134 71 442 236 0 0 chr11 14337534 14337623 -136445930 - L2 LINE L2 0 3272 3184 2813 84 6 0 chr11 14337757 14338115 -136445438 - L1PB1 LINE L1 0 6151 5792 642 132 0 0 chr11 14338221 14338312 -136445241 + FRAM SINE Alu 74 164 -12 279 254 17 0 chr11 14338329 14338388 -136445165 + L2 LINE L2 3223 3282 -31 1007 224 72 99 chr11 14338388 14338910 -136444643 + MLT1H LTR MaLR 1 549 0 1999 190 3 6 chr11 14339594 14339942 -136443611 + MLT1A1 LTR MaLR 19 365 0 510 184 122 10 chr11 14340529 14340627 -136442926 - MER81 DNA DNA -1 113 5 326 235 24 12 chr11 14340720 14340805 -136442748 + MIR SINE MIR 128 213 -49 261 348 0 11 chr11 14341346 14341438 -136442115 + MER5A DNA MER1_type 95 185 -4 224 345 53 18 chr11 14341436 14341549 -136442004 + L2 LINE L2 3144 3260 -12 * 291 295 152 9 chr11 14342807 14342912 -136440641 + L2 LINE L2 3151 3270 -2 307 232 49 49 chr11 14342935 14343017 -136440536 - MIR SINE MIR -118 144 63 2611 119 86 0 chr11 14343674 14344068 -136439485 - MSTA LTR MaLR 0 428 1 549 224 22 30 chr11 14344124 14344258 -136439295 - MER117 DNA MER1_type -61 136 4 12570 25 0 0 chr11 14346767 14348386 -136435167 - L1P1 LINE L1 -594 5561 3943 1244 253 35 59 chr11 14348409 14348900 -136434653 + L1M4 LINE L1 3689 4167 -1979 1135 234 31 0 chr11 14348902 14349192 -136434361 + L1MC3 LINE L1 7324 7622 -163 941 169 0 0 chr11 14349321 14349502 -136434051 - FRAM SINE Alu 0 185 5 257 210 16 16 chr11 14349973 14350035 -136433518 - MER103 DNA DNA -92 74 13 22 0 0 0 chr11 14350480 14350502 -136433051 + AT_rich Low_complexity Low_complexity 1 22 0 2668 127 6 3 chr11 14350691 14351054 -136432499 - THE1B LTR MaLR 0 364 1 990 300 109 9 chr11 14351117 14351668 -136431885 - L2 LINE L2 -2 3311 2707 184 368 103 23 chr11 14351786 14352096 -136431457 + L2 LINE L2 183 517 -2797 448 350 14 32 chr11 14352140 14352360 -136431193 + L2 LINE L2 2065 2280 -1034 1774 174 3 7 chr11 14352360 14352659 -136430894 - AluSx SINE Alu -10 302 5 223 266 62 62 chr11 14352695 14352808 -136430745 + L2 LINE L2 3200 3312 -1 243 88 0 0 chr11 14352909 14352943 -136430610 + (TA)n Simple_repeat Simple_repeat 2 35 0 5544 166 7 5 chr11 14352943 14354514 -136429039 - L1P5 LINE L1 -371 5780 4204 442 198 73 0 chr11 14354522 14354618 -136428935 - L1 LINE L1 -2060 4086 3984 443 185 11 22 chr11 14354620 14354712 -136428841 - L2 LINE L2 -967 2347 2257 639 328 189 20 chr11 14354807 14355417 -136428136 - L2 LINE L2 -370 2944 2232 188 67 33 0 chr11 14355453 14355483 -136428070 + (TG)n Simple_repeat Simple_repeat 1 31 0 2043 161 24 59 chr11 14355635 14356334 -136427219 - MER4A LTR ERV1 0 689 1 283 345 59 77 chr11 14357441 14357884 -136425669 - L2 LINE L2 -3 3269 2835 420 306 15 0 chr11 14358252 14358386 -136425167 - MIR SINE MIR -121 141 6 227 31 31 0 chr11 14358919 14358951 -136424602 + (TC)n Simple_repeat Simple_repeat 2 34 0 333 0 0 0 chr11 14359712 14359749 -136423804 + (CA)n Simple_repeat Simple_repeat 1 37 0 2378 200 114 82 chr11 14361435 14362204 -136421349 - MER21B LTR ERV1 -69 794 1 1546 218 19 3 chr11 14362543 14362860 -136420693 + MER110 LTR ERV1 10 331 -160 340 333 63 35 chr11 14363012 14363186 -136420367 + L2 LINE L2 2902 3080 -192 369 309 68 65 chr11 14364193 14364517 -136419036 - L2 LINE L2 -49 3264 2940 1057 98 0 0 chr11 14364693 14364826 -136418727 - AluSq/x SINE Alu -179 133 1 600 269 32 13 chr11 14364972 14365128 -136418425 + MIR SINE MIR 2 160 -102 3070 180 12 23 chr11 14366146 14366707 -136416846 - L1MB8 LINE L1 -5 6173 5619 185 370 0 22 chr11 14366868 14366960 -136416593 - L2 LINE L2 -32 3240 3151 676 217 123 18 chr11 14366964 14367181 -136416372 - MIR SINE MIR -3 259 19 725 277 64 12 chr11 14367185 14367434 -136416119 + MIR SINE MIR 1 262 0 222 156 0 0 chr11 14367528 14367573 -136415980 + A-rich Low_complexity Low_complexity 1 45 0 187 347 13 40 chr11 14368477 14368552 -136415001 + L2 LINE L2 3112 3184 -88 354 296 80 8 chr11 14368652 14368777 -136414776 - MIR SINE MIR -72 190 57 1750 154 37 3 chr11 14368998 14369296 -136414257 + AluJb SINE Alu 1 308 -4 486 283 97 18 chr11 14370299 14370498 -136413055 + MIR SINE MIR 20 230 -32 1739 94 34 0 chr11 14370603 14370838 -136412715 - AluSp SINE Alu -70 243 1 24 0 0 0 chr11 14371025 14371049 -136412504 + AT_rich Low_complexity Low_complexity 1 24 0 2292 94 0 0 chr11 14371050 14371338 -136412215 - AluSx SINE Alu -24 288 1 621 152 0 45 chr11 14371762 14371874 -136411679 - FRAM SINE Alu -1 175 69 1171 239 81 0 chr11 14371986 14372296 -136411257 - L1ME1 LINE L1 -25 6141 5807 711 283 25 10 chr11 14372345 14372543 -136411010 + MIR SINE MIR 59 259 -3 21 0 0 0 chr11 14372543 14372564 -136410989 + AT_rich Low_complexity Low_complexity 1 21 0 539 252 0 0 chr11 14373123 14373238 -136410315 - MIR SINE MIR -118 144 30 964 196 50 10 chr11 14373239 14373438 -136410115 + MER3 DNA MER1_type 3 209 0 250 303 106 38 chr11 14374316 14374448 -136409105 - MIR SINE MIR -15 247 107 190 299 45 30 chr11 14374438 14374505 -136409048 - MIR3 SINE MIR -126 82 15 * 193 262 24 0 chr11 14375322 14375364 -136408189 - L2 LINE L2 -21 3251 3209 4316 248 80 27 chr11 14375662 14377351 -136406202 + L1ME3A LINE L1 3700 5557 -610 180 0 0 0 chr11 14377351 14377371 -136406182 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 4316 248 80 27 chr11 14377371 14378015 -136405538 + L1ME3A LINE L1 5557 6165 -2 477 343 28 58 chr11 14378381 14378745 -136404808 - L2 LINE L2 -9 3263 2911 215 269 0 0 chr11 14378879 14378931 -136404622 + MIR SINE MIR 54 105 -157 2458 101 33 19 chr11 14379008 14379376 -136404177 + L1MA1 LINE L1 5930 6302 0 2704 16 0 7 chr11 14379385 14379691 -136403862 + AluY SINE Alu 1 304 -7 943 277 43 0 chr11 14380640 14380875 -136402678 - MIR SINE MIR 0 262 18 180 111 0 0 chr11 14381123 14381150 -136402403 + (T)n Simple_repeat Simple_repeat 1 27 0 225 298 18 0 chr11 14381830 14381887 -136401666 - L2 LINE L2 -16 3256 3199 245 330 110 0 chr11 14382255 14382364 -136401189 - L2 LINE L2 -2 3270 3150 1321 237 61 53 chr11 14382369 14382841 -136400712 + MLT2B3 LTR ERVL 1 547 -7 313 294 98 28 chr11 14383470 14383613 -136399940 - L2 LINE L2 -20 3293 3141 30 45 0 0 chr11 14383649 14383693 -136399860 + AT_rich Low_complexity Low_complexity 1 44 0 411 208 26 0 chr11 14383994 14384071 -136399482 + FRAM/FAM SINE Alu 11 89 -87 277 358 0 11 chr11 14384145 14384240 -136399313 - L2 LINE L2 -207 3065 2972 505 279 132 5 chr11 14385036 14385233 -136398320 - MIR SINE MIR 0 262 41 501 268 52 20 chr11 14385230 14385383 -136398170 - MIR SINE MIR -79 183 26 * 189 0 0 0 chr11 14385647 14385668 -136397885 + (T)n Simple_repeat Simple_repeat 1 21 0 1245 194 8 28 chr11 14390458 14390706 -136392847 + L1MC4 LINE L1 7454 7696 -346 1500 166 26 26 chr11 14390707 14391009 -136392544 + MER33 DNA MER1_type 1 302 -22 1279 172 52 85 chr11 14391041 14391407 -136392146 + L1MC4 LINE L1 7687 8040 -2 301 294 134 0 chr11 14391687 14391806 -136391747 + HAL1 LINE L1 1219 1353 -1154 36 0 0 0 chr11 14391817 14391853 -136391700 + AT_rich Low_complexity Low_complexity 1 36 0 2208 111 0 0 chr11 14391853 14392141 -136391412 - AluSx SINE Alu -24 288 1 282 310 123 15 chr11 14392265 14392468 -136391085 + HAL1 LINE L1 1450 1674 -833 345 308 78 75 chr11 14393105 14393162 -136390391 + L1 LINE L1 2740 2795 -3351 2671 136 44 7 chr11 14393162 14393573 -136389980 + MSTB LTR MaLR 1 426 0 345 308 78 75 chr11 14393573 14393953 -136389600 + L1 LINE L1 2795 3178 -2968 319 193 23 0 chr11 14394515 14394603 -136388950 + CT-rich Low_complexity Low_complexity 2 91 0 259 286 79 57 chr11 14394603 14394743 -136388810 + MIR SINE MIR 44 186 -76 241 344 26 7 chr11 14394824 14394975 -136388578 + L1 LINE L1 3788 3941 -2205 2451 42 0 3 chr11 14394975 14395259 -136388294 + AluY SINE Alu 14 296 -15 884 158 11 84 chr11 14395450 14395640 -136387913 - AluJb SINE Alu -2 310 135 225 244 59 50 chr11 14395733 14395852 -136387701 + L1 LINE L1 4326 4445 -1701 567 241 107 18 chr11 14396419 14396851 -136386702 - LTR33 LTR ERVL -2 519 25 257 269 51 0 chr11 14396943 14397021 -136386532 - HAL1 LINE L1 -2422 85 4 1805 188 152 5 chr11 14397392 14397807 -136385746 + MLT2B1 LTR ERVL 1 486 -34 442 31 15 15 chr11 14397807 14397872 -136385681 + (TCTA)n Simple_repeat Simple_repeat 2 66 0 1805 188 152 5 chr11 14397872 14397898 -136385655 + MLT2B1 LTR ERVL 486 507 -13 389 326 78 8 chr11 14398209 14398454 -136385099 + L2 LINE L2 2427 2688 -626 272 263 40 10 chr11 14398563 14398662 -136384891 - L2 LINE L2 0 3313 3212 404 325 60 40 chr11 14398679 14398977 -136384576 + L1ME LINE L1 5360 5663 -458 2248 118 3 0 chr11 14399031 14399327 -136384226 - AluSx SINE Alu -15 297 1 337 319 72 14 chr11 14400336 14400474 -136383079 + MIR3 SINE MIR 18 163 -45 1034 206 143 20 chr11 14400860 14401112 -136382441 + Charlie1a DNA MER1_type 1 283 -1172 1498 138 0 40 chr11 14401120 14401367 -136382186 + L1PA8 LINE L1 7 243 -6218 4204 142 34 91 chr11 14401367 14402401 -136381152 + pTR5 LTR ERV1 745 2131 -475 183 42 0 0 chr11 14402401 14402425 -136381128 + (G)n Simple_repeat Simple_repeat 1 24 0 4204 142 34 91 chr11 14402425 14402876 -136380677 + pTR5 LTR ERV1 2131 2606 0 30945 112 9 27 chr11 14402876 14409093 -136374460 + L1PA8 LINE L1 253 6460 -27 5840 161 35 44 chr11 14409093 14410320 -136373233 + Charlie1a DNA MER1_type 240 1455 0 189 379 53 0 chr11 14410737 14410832 -136372721 - L2 LINE L2 -56 3216 3117 365 306 9 18 chr11 14411916 14412027 -136371526 + L2 LINE L2 3136 3245 -27 1591 128 68 68 chr11 14412151 14412447 -136371106 - AluJo SINE Alu -16 296 1 2303 106 0 0 chr11 14412720 14413022 -136370531 + AluSx SINE Alu 1 302 -10 695 255 109 21 chr11 14414437 14414676 -136368877 - MIR SINE MIR 0 262 3 272 296 26 17 chr11 14415310 14415425 -136368128 + T-rich Low_complexity Low_complexity 3 118 0 811 98 0 0 chr11 14415463 14415565 -136367988 + AluSx SINE Alu 1 102 -211 1508 103 25 0 chr11 14415620 14415823 -136367730 + AluSx SINE Alu 99 306 -4 646 297 91 13 chr11 14416608 14416840 -136366713 + MIR SINE MIR 13 262 0 213 271 43 29 chr11 14417183 14417253 -136366300 - MIR SINE MIR -171 91 21 418 319 122 18 chr11 14417923 14418152 -136365401 + MIR SINE MIR 8 260 -2 255 289 83 107 chr11 14419396 14419759 -136363794 - L2 LINE L2 -9 3263 2910 823 169 8 0 chr11 14419801 14419931 -136363622 + Tigger4(Zombi) DNA MER2_type 1 131 -2600 2052 118 6 72 chr11 14419934 14420297 -136363256 + Tigger4(Zombi) DNA MER2_type 2393 2731 0 250 314 109 19 chr11 14420297 14420453 -136363100 - L2 LINE L2 -466 2848 2679 186 218 36 55 chr11 14421006 14421061 -136362492 - L2 LINE L2 -18 3254 3201 377 268 0 10 chr11 14421095 14421192 -136362361 - MER46C DNA MER2_type 0 338 243 1946 115 50 4 chr11 14421249 14421527 -136362026 + AluSx SINE Alu 1 291 -21 259 229 0 71 chr11 14422723 14422793 -136360760 + L2 LINE L2 3238 3302 -11 323 324 56 7 chr11 14423536 14423678 -136359875 - L2 LINE L2 -2 3311 3163 629 239 38 19 chr11 14423920 14424079 -136359474 - MIR SINE MIR -13 249 88 760 190 57 0 chr11 14424163 14424321 -136359232 - L1MD2 LINE L1 -10 6349 6183 1675 178 10 13 chr11 14426047 14426350 -136357203 - AluJo SINE Alu -6 306 5 295 305 137 15 chr11 14427243 14427374 -136356179 + L2 LINE L2 3085 3231 -41 261 347 0 0 chr11 14427436 14427534 -136356019 + Charlie4 DNA MER1_type 1860 1957 -4 313 162 14 14 chr11 14429782 14429856 -136353697 + GA-rich Low_complexity Low_complexity 3 76 0 191 203 16 0 chr11 14431847 14431911 -136351642 + (TAGA)n Simple_repeat Simple_repeat 3 67 0 247 327 154 10 chr11 14432017 14432225 -136351328 + MIR SINE MIR 15 252 -10 234 260 52 52 chr11 14432331 14432408 -136351145 + L2 LINE L2 3169 3245 -27 737 271 72 32 chr11 14432466 14432536 -136351017 - MIR SINE MIR 0 262 196 607 252 126 6 chr11 14432536 14432695 -136350858 + MER5B DNA MER1_type 1 178 0 737 271 72 32 chr11 14432695 14432875 -136350678 - MIR SINE MIR -66 196 2 219 255 0 0 chr11 14433057 14433104 -136350449 + MIR SINE MIR 82 128 -80 363 185 15 0 chr11 14433702 14433767 -136349786 + L2 LINE L2 3246 3311 -2 640 242 81 31 chr11 14434312 14434473 -136349080 + MIR SINE MIR 7 175 -87 1688 150 6 70 chr11 14435218 14435532 -136348021 - AluJo SINE Alu -17 295 2 1799 206 194 15 chr11 14435543 14436157 -136347396 - L1MC4 LINE L1 0 8042 7239 206 192 13 51 chr11 14436160 14436238 -136347315 + (TTTA)n Simple_repeat Simple_repeat 1 75 0 2307 66 14 7 chr11 14436347 14436636 -136346917 - AluY SINE Alu -20 291 1 915 259 31 42 chr11 14436959 14437218 -136346335 - MIR SINE MIR 0 262 7 2623 139 10 10 chr11 14439708 14440118 -136343435 + L1MB5 LINE L1 5765 6174 0 377 288 142 34 chr11 14441223 14441428 -136342125 + MIR SINE MIR 2 228 -34 1991 149 10 80 chr11 14441474 14441698 -136341855 - MLT1A1 LTR MaLR 0 365 178 1876 152 0 3 chr11 14441698 14441987 -136341566 - AluJo SINE Alu -16 296 9 1991 149 10 80 chr11 14441987 14442151 -136341402 - MLT1A1 LTR MaLR -187 178 4 355 333 133 27 chr11 14442372 14442666 -136340887 + LTR16C LTR ERVL 157 481 -10 1201 219 23 0 chr11 14442717 14442932 -136340621 - MER58A DNA MER1_type 0 224 5 622 231 90 1 chr11 14443272 14443548 -136340005 - MER46C DNA MER2_type 0 338 3 814 183 157 5 chr11 14444062 14444253 -136339300 + MIR SINE MIR 8 227 -35 2244 105 3 0 chr11 14444996 14445290 -136338263 - AluSq SINE Alu -18 295 1 631 306 108 27 chr11 14445915 14446693 -136336860 + L1MC4a LINE L1 3977 4817 -1329 333 197 13 13 chr11 14447129 14447205 -136336348 + LTR33 LTR ERVL 426 501 -20 392 307 132 18 chr11 14447221 14447501 -136336052 + L1MC4a LINE L1 4967 5278 -868 229 167 48 36 chr11 14447542 14447626 -136335927 + (TA)n Simple_repeat Simple_repeat 1 85 0 21 0 0 0 chr11 14447632 14447653 -136335900 + AT_rich Low_complexity Low_complexity 1 21 0 2085 114 0 26 chr11 14447653 14447960 -136335593 - AluSx SINE Alu -13 299 1 784 294 97 20 chr11 14448042 14448466 -136335087 + L1MC4a LINE L1 5476 5819 -302 2070 154 0 0 chr11 14448612 14448918 -136334635 - AluSx SINE Alu -6 306 1 200 259 35 17 chr11 14449134 14449192 -136334361 + MIR SINE MIR 86 144 -118 257 238 0 109 chr11 14449708 14449809 -136333744 + MER89 LTR ERV1 5 94 -465 * 1583 185 51 46 chr11 14449787 14450138 -136333415 + MER89 LTR ERV1 207 559 0 520 215 52 22 chr11 14450813 14450948 -136332605 + MER103 DNA DNA 26 164 -2 298 179 77 39 chr11 14451833 14451911 -136331642 + L2 LINE L2 3191 3271 -1 251 239 106 62 chr11 14452515 14452628 -136330925 - MIR SINE MIR -10 252 135 753 281 129 33 chr11 14452849 14453702 -136329851 - L1ME3A LINE L1 -273 5897 4943 6284 158 16 40 chr11 14453713 14454753 -136328800 - L1MC1 LINE L1 -6 6327 5264 2036 139 0 10 chr11 14454753 14455064 -136328489 - AluSx SINE Alu 0 308 1 2255 93 21 0 chr11 14455068 14455358 -136328195 - AluSx SINE Alu -16 296 1 6284 158 16 40 chr11 14455358 14455903 -136327650 - L1MC1 LINE L1 -1072 5261 4759 1316 319 148 40 chr11 14455903 14456027 -136327526 + L2 LINE L2 1566 1675 -1639 954 28 0 0 chr11 14456027 14456134 -136327419 + L1PA4 LINE L1 6046 6152 -3 1316 319 148 40 chr11 14456134 14457249 -136326304 + L2 LINE L2 1675 2939 -375 2078 157 3 3 chr11 14457330 14457636 -136325917 + AluJo SINE Alu 1 306 -6 342 284 169 22 chr11 14457788 14458013 -136325540 - MIR SINE MIR 0 262 5 207 200 12 18 chr11 14458473 14458555 -136324998 - MIR SINE MIR -66 142 21 421 189 94 31 chr11 14458945 14459072 -136324481 + L1ME4a LINE L1 5970 6104 -17 749 221 16 0 chr11 14459090 14459217 -136324336 - FLAM_A SINE Alu -4 129 1 490 312 32 37 chr11 14460507 14460696 -136322857 + MIR SINE MIR 11 198 -64 611 303 93 11 chr11 14460890 14461246 -136322307 - L1ME4a LINE L1 -23 6098 5714 4417 147 55 3 chr11 14461929 14462689 -136320864 - L1PA16 LINE L1 -20 6146 5353 514 250 45 13 chr11 14463278 14463434 -136320119 + MIR SINE MIR 70 230 -32 2601 127 42 10 chr11 14463441 14463850 -136319703 + MER61B LTR ERV1 4 425 0 189 0 0 0 chr11 14464102 14464123 -136319430 + (TG)n Simple_repeat Simple_repeat 2 22 0 280 309 66 29 chr11 14464357 14464493 -136319060 + MIR SINE MIR 3 143 -119 1664 141 59 40 chr11 14464743 14465047 -136318506 - AluJo SINE Alu -1 311 2 249 196 107 0 chr11 14465091 14465147 -136318406 - MIR SINE MIR -84 178 117 263 306 116 56 chr11 14465702 14465918 -136317635 - MIR SINE MIR -14 248 20 233 289 96 0 chr11 14467459 14467542 -136316011 + L2 LINE L2 2972 3062 -210 432 318 20 7 chr11 14467637 14467785 -136315768 + MER5B DNA MER1_type 26 175 -3 451 293 0 0 chr11 14467808 14467914 -136315639 + L2 LINE L2 3208 3313 0 516 274 17 0 chr11 14468035 14468152 -136315401 + L2 LINE L2 3193 3311 -2 378 300 100 0 chr11 14468207 14468327 -136315226 + MIR3 SINE MIR 56 187 -21 3714 160 36 46 chr11 14468431 14469207 -136314346 + LTR1 LTR ERV1 1 768 -17 2259 101 0 0 chr11 14469230 14469526 -136314027 - AluSg SINE Alu -14 296 1 909 243 131 16 chr11 14469911 14470224 -136313329 + L2 LINE L2 2614 2962 -352 387 273 59 37 chr11 14470584 14470771 -136312782 - MIR SINE MIR -51 211 21 343 299 87 31 chr11 14471950 14472077 -136311476 - L2 LINE L2 0 3272 3139 687 222 52 26 chr11 14472289 14472483 -136311070 - MIR SINE MIR -32 230 32 593 304 29 58 chr11 14472484 14472797 -136310756 - L1MC4a LINE L1 -1983 5825 5522 733 256 99 67 chr11 14473105 14473671 -136309882 + MLT1L LTR MaLR 2 615 0 237 234 43 0 chr11 14473809 14473903 -136309650 + (TA)n Simple_repeat Simple_repeat 1 98 0 777 235 16 33 chr11 14473915 14474098 -136309455 - MIR SINE MIR -73 189 10 381 286 158 15 chr11 14474096 14474299 -136309254 + L2 LINE L2 2313 2544 -770 * 264 360 79 14 chr11 14474441 14474580 -136308973 + L2 LINE L2 2913 3060 -212 345 248 113 45 chr11 14475574 14475707 -136307846 + MIR SINE MIR 50 191 -71 197 245 0 38 chr11 14476373 14476426 -136307127 + L2 LINE L2 3221 3271 -1 182 203 29 101 chr11 14476978 14477047 -136306506 + MIR SINE MIR 178 241 -21 1818 158 37 79 chr11 14477712 14478092 -136305461 + MLT1A1 LTR MaLR 2 365 0 29 47 0 0 chr11 14478406 14478449 -136305104 + AT_rich Low_complexity Low_complexity 1 43 0 308 206 54 22 chr11 14478667 14478759 -136304794 - MER117 DNA MER1_type -88 109 15 404 227 93 58 chr11 14478760 14478932 -136304621 - MER104 DNA MER2_type 0 180 3 397 283 88 19 chr11 14479368 14479527 -136304026 + MIR SINE MIR 80 249 -13 433 325 60 67 chr11 14480365 14480663 -136302890 - L2 LINE L2 0 3272 2977 556 305 79 5 chr11 14481209 14481399 -136302154 - MIR SINE MIR -34 228 25 248 230 115 23 chr11 14481591 14481678 -136301875 - L2 LINE L2 -497 2817 2723 186 320 81 30 chr11 14482971 14483168 -136300385 + L2 LINE L2 2233 2439 -875 * 490 304 106 94 chr11 14483160 14483268 -136300285 - L2 LINE L2 0 3272 3167 2013 191 22 11 chr11 14483268 14483629 -136299924 + MLT1A1 LTR MaLR 1 365 0 490 304 106 94 chr11 14483629 14484016 -136299537 - L2 LINE L2 -105 3167 2773 439 224 26 35 chr11 14484050 14484166 -136299387 - L2 LINE L2 -9 3304 3190 230 317 128 12 chr11 14484197 14484361 -136299192 - L2 LINE L2 -647 2667 2485 392 350 56 54 chr11 14484438 14484884 -136298669 - L2 LINE L2 -1648 1666 1220 545 173 12 9 chr11 14484923 14485096 -136298457 + MER2 DNA MER2_type 1 211 -134 24 0 0 0 chr11 14485103 14485127 -136298426 + AT_rich Low_complexity Low_complexity 1 24 0 729 213 170 43 chr11 14485185 14485466 -136298087 + MLT1D LTR MaLR 31 347 -158 1959 143 87 15 chr11 14485466 14485562 -136297991 + MER1B DNA MER1_type 1 89 -2623 3290 69 29 40 chr11 14485562 14486011 -136297542 + MLT2A1 LTR ERVL 1 444 0 1959 143 87 15 chr11 14486011 14486235 -136297318 + MER1B DNA MER1_type 89 339 0 985 182 0 6 chr11 14486235 14486397 -136297156 + MLT1D LTR MaLR 340 500 -5 329 323 101 12 chr11 14486411 14486659 -136296894 - L2 LINE L2 -2104 1210 941 219 339 63 42 chr11 14486765 14486954 -136296599 + L2 LINE L2 2588 2780 -534 486 273 162 23 chr11 14487208 14487424 -136296129 - MIR SINE MIR 0 262 17 301 238 135 16 chr11 14487747 14487873 -136295680 - L2 LINE L2 -1064 2250 2110 660 196 153 37 chr11 14487880 14488043 -136295510 + MER20 DNA MER1_type 8 189 -30 635 244 6 6 chr11 14488046 14488222 -136295331 + L1MA9 LINE L1 5029 5204 -942 1321 171 4 13 chr11 14488223 14488451 -136295102 + AluJo SINE Alu 87 312 0 4261 179 38 52 chr11 14488457 14489061 -136294492 + L1MA9 LINE L1 5192 5786 -526 306 50 0 0 chr11 14489061 14489101 -136294452 + (TG)n Simple_repeat Simple_repeat 2 41 0 4261 179 38 52 chr11 14489101 14489577 -136293976 + L1MA9 LINE L1 5786 6267 -45 2896 163 4 6 chr11 14489600 14490066 -136293487 + LTR42 LTR ERVL 1 465 -30 407 284 147 33 chr11 14490077 14490376 -136293177 - L2 LINE L2 -1289 2025 1693 338 311 20 66 chr11 14490828 14491024 -136292529 + MER5A DNA MER1_type 3 189 0 2717 218 55 34 chr11 14491376 14492284 -136291269 - L1MCc LINE L1 -5117 1824 19 246 315 22 11 chr11 14492306 14492395 -136291158 - MIR SINE MIR -108 154 65 873 289 99 12 chr11 14492710 14493052 -136290501 - L2 LINE L2 -18 3295 2924 254 366 28 28 chr11 14493067 14493283 -136290270 + L3 LINE CR1 675 890 -687 2058 103 55 3 chr11 14493539 14493830 -136289723 + AluSq SINE Alu 1 306 -7 336 183 49 24 chr11 14493913 14493995 -136289558 + L2 LINE L2 3192 3275 -38 298 223 71 45 chr11 14494999 14495111 -136288442 + MIR SINE MIR 67 181 -81 329 378 39 0 chr11 14495147 14495274 -136288279 - L2 LINE L2 0 3272 3141 236 281 16 0 chr11 14495733 14495797 -136287756 - MIR SINE MIR -12 250 186 1025 210 62 93 chr11 14496213 14496666 -136286887 + L1ME4a LINE L1 5645 6083 -38 2076 120 63 38 chr11 14497581 14497947 -136285606 + THE1C LTR MaLR 1 375 0 407 231 103 74 chr11 14498023 14498226 -136285327 - L2 LINE L2 0 3313 3105 455 297 30 96 chr11 14498394 14498727 -136284826 - L3 LINE CR1 -553 1024 714 459 288 31 16 chr11 14498821 14499012 -136284541 + L1ME LINE L1 5577 5770 -351 591 281 62 53 chr11 14499439 14499780 -136283773 - L2 LINE L2 -15 3298 2955 33631 102 15 56 chr11 14500226 14506874 -136276679 + L1PA7 LINE L1 2 6154 0 460 221 11 0 chr11 14507108 14507203 -136276350 + L2 LINE L2 3176 3271 -1 414 241 18 112 chr11 14507474 14507644 -136275909 + MIR SINE MIR 90 243 -19 892 269 44 8 chr11 14507677 14507926 -136275627 + MIR SINE MIR 4 261 -1 1195 166 11 5 chr11 14508080 14508267 -136275286 - MER5A DNA MER1_type -1 188 1 232 170 19 19 chr11 14508397 14508450 -136275103 - L2 LINE L2 0 3313 3261 2387 165 28 5 chr11 14508547 14508934 -136274619 + MSTD LTR MaLR 1 396 0 559 198 26 141 chr11 14508947 14509139 -136274414 + MIR SINE MIR 90 259 -3 189 357 21 42 chr11 14509769 14509912 -136273641 - L3b LINE CR1 -324 1259 1120 625 221 35 14 chr11 14510798 14510943 -136272610 + MLT1J2 LTR MaLR 1 148 -302 1048 166 148 42 chr11 14510969 14511045 -136272508 - MER44D DNA MER2_type -1907 584 517 306 0 0 0 chr11 14511045 14511079 -136272474 + (CATA)n Simple_repeat Simple_repeat 3 36 0 1048 166 148 42 chr11 14511079 14511285 -136272268 - MER44D DNA MER2_type -1974 517 2 771 281 100 21 chr11 14511285 14511554 -136271999 + MLT1J2 LTR MaLR 146 436 -14 2468 93 0 0 chr11 14511620 14511931 -136271622 + AluY SINE Alu 1 311 0 341 315 84 14 chr11 14512032 14512175 -136271378 + L2 LINE L2 3111 3263 -9 332 364 8 0 chr11 14512244 14512376 -136271177 - MIR3 SINE MIR -5 203 71 551 53 0 0 chr11 14512628 14512703 -136270850 + L1PA4 LINE L1 6081 6155 0 2178 105 10 3 chr11 14512905 14513199 -136270354 + AluSx SINE Alu 1 296 -16 534 272 31 57 chr11 14513580 14513808 -136269745 + LTR16A1 LTR ERVL 208 429 -28 1932 203 45 7 chr11 14513824 14514242 -136269311 + MLT1C LTR MaLR 34 467 0 250 321 0 0 chr11 14514617 14514701 -136268852 + MIR SINE MIR 131 214 -48 2993 248 42 25 chr11 14514863 14515208 -136268345 + L1ME3A LINE L1 4519 4857 -1313 531 106 0 59 chr11 14515208 14515293 -136268260 + MADE1 DNA Mariner 1 80 0 2993 248 42 25 chr11 14515293 14516556 -136266997 + L1ME3A LINE L1 4857 6163 -7 328 269 244 6 chr11 14517089 14517249 -136266304 + MIR SINE MIR 50 247 -15 296 215 0 11 chr11 14517257 14517350 -136266203 + (ATG)n Simple_repeat Simple_repeat 3 94 0 468 331 20 0 chr11 14517701 14517849 -136265704 + L2 LINE L2 3121 3271 -1 405 307 41 83 chr11 14517965 14518304 -136265249 - L2 LINE L2 -20 3252 2928 199 323 21 37 chr11 14518356 14518545 -136265008 - L2 LINE L2 -452 2862 2677 386 301 67 23 chr11 14519376 14519557 -136263996 + MIR SINE MIR 28 216 -46 22 0 0 0 chr11 14519571 14519593 -136263960 + AT_rich Low_complexity Low_complexity 1 22 0 281 238 83 0 chr11 14519593 14519677 -136263876 + MIR SINE MIR 120 210 -52 383 340 29 29 chr11 14520012 14520218 -136263335 + MLT1K LTR MaLR 216 421 -167 702 237 41 12 chr11 14520291 14520460 -136263093 + MLT1K LTR MaLR 412 585 -3 830 310 172 18 chr11 14520628 14521309 -136262244 + L3 LINE CR1 576 1361 -216 23 0 0 0 chr11 14521696 14521719 -136261834 + AT_rich Low_complexity Low_complexity 1 23 0 708 285 158 12 chr11 14522247 14522664 -136260889 - L2 LINE L2 -9 3304 2827 1657 182 7 23 chr11 14523846 14524148 -136259405 - AluJb SINE Alu -15 297 1 806 298 14 39 chr11 14524267 14524546 -136259007 + MLT1J LTR MaLR 1 272 -239 848 216 129 14 chr11 14524596 14524883 -136258670 - MER33 DNA MER1_type 0 324 5 275 196 18 0 chr11 14524892 14524948 -136258605 + MLT1J LTR MaLR 325 381 -130 191 77 0 77 chr11 14525686 14525725 -136257828 + (T)n Simple_repeat Simple_repeat 1 36 0 563 292 50 10 chr11 14526050 14526252 -136257301 + MIR SINE MIR 15 224 -38 434 291 62 4 chr11 14526303 14526530 -136257023 - MIR SINE MIR -4 258 8 304 209 219 19 chr11 14528258 14528363 -136255190 - MIR SINE MIR -67 141 16 204 97 0 0 chr11 14530504 14530535 -136253018 + (AGCTG)n Simple_repeat Simple_repeat 3 33 0 218 298 28 35 chr11 14530821 14530962 -136252591 - MIR SINE MIR -6 256 117 995 175 134 0 chr11 14531069 14531286 -136252267 - ORSL DNA AcHobo -27 248 3 280 325 75 0 chr11 14531444 14531564 -136251989 + MIR3 SINE MIR 33 161 -47 185 244 59 67 chr11 14531962 14532081 -136251472 + L2 LINE L2 1882 1999 -1315 196 335 70 0 chr11 14532177 14532257 -136251296 - L2 LINE L2 -3 3310 3237 300 120 0 0 chr11 14532257 14532307 -136251246 + (TCCA)n Simple_repeat Simple_repeat 4 53 0 196 335 70 0 chr11 14532307 14532418 -136251135 - L2 LINE L2 -76 3237 3117 418 282 72 72 chr11 14533008 14533432 -136250121 + L2 LINE L2 2555 3061 -211 347 141 16 0 chr11 14533487 14533551 -136250002 + CT-rich Low_complexity Low_complexity 3 67 0 835 176 0 0 chr11 14533571 14533702 -136249851 - FLAM_C SINE Alu -1 132 2 369 308 14 21 chr11 14533766 14533909 -136249644 + L2 LINE L2 3171 3312 -1 276 286 110 0 chr11 14534622 14534713 -136248840 + MER5A DNA MER1_type 2 102 -87 464 197 161 29 chr11 14539151 14539288 -136244265 - MIR SINE MIR -24 238 84 414 183 12 12 chr11 14540023 14540105 -136243448 + L2 LINE L2 3191 3272 0 654 257 10 35 chr11 14540237 14540439 -136243114 + L2 LINE L2 3113 3309 -4 242 260 0 39 chr11 14540500 14540577 -136242976 - L3 LINE CR1 -159 1418 1345 2628 193 99 0 chr11 14540621 14541128 -136242425 + MLT1F1 LTR MaLR 1 557 -10 214 307 40 40 chr11 14541194 14541295 -136242258 - L3 LINE CR1 -403 1174 1074 620 325 27 25 chr11 14541894 14542152 -136241401 + MIR SINE MIR 4 262 0 336 274 203 0 chr11 14542153 14542306 -136241247 - L3 LINE CR1 -789 788 605 241 302 38 19 chr11 14542385 14542491 -136241062 - L3 LINE CR1 -996 581 474 958 66 1 4 chr11 14542492 14542616 -136240937 + L1M4 LINE L1 5646 5767 -398 1326 60 6 0 chr11 14542616 14542780 -136240773 + L1PA5 LINE L1 5986 6153 -1 552 277 74 76 chr11 14543013 14543514 -136240039 + MLT1J LTR MaLR 1 500 -11 2771 160 2 32 chr11 14543747 14544210 -136239343 + MER70A LTR ERVL 24 472 0 221 81 0 27 chr11 14545080 14545117 -136238436 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 1193 62 0 0 chr11 14545117 14545262 -136238291 - MER107 DNA MER1_type -52 145 1 1020 261 110 0 chr11 14545266 14545530 -136238023 - MER58B DNA MER1_type -48 293 1 205 410 0 0 chr11 14546082 14546182 -136237371 + L2 LINE L2 3148 3247 -25 777 267 102 39 chr11 14546247 14546580 -136236973 - MLT1L LTR MaLR -115 500 147 1096 156 0 95 chr11 14546583 14546772 -136236781 + MER20 DNA MER1_type 5 170 -49 2349 113 0 3 chr11 14546772 14547082 -136236471 + AluSc SINE Alu 1 309 0 1096 156 0 95 chr11 14547082 14547123 -136236430 + MER20 DNA MER1_type 170 213 -6 379 188 23 188 chr11 14547129 14547305 -136236248 - MLT1L LTR MaLR -461 154 8 240 328 43 0 chr11 14547566 14547682 -136235871 - MIR SINE MIR -31 231 111 489 251 62 34 chr11 14548812 14549027 -136234526 - MLT1H LTR MaLR -2 548 329 1151 177 107 69 chr11 14550468 14550843 -136232710 - MLT1E1 LTR MaLR 0 654 190 1724 179 0 7 chr11 14550843 14551134 -136232419 + AluJo SINE Alu 1 289 -23 1151 177 107 69 chr11 14551134 14551332 -136232221 - MLT1E1 LTR MaLR -464 190 1 2069 117 4 0 chr11 14551497 14551802 -136231751 - AluSq SINE Alu 0 306 1 192 40 0 0 chr11 14551806 14551831 -136231722 + (TTA)n Simple_repeat Simple_repeat 1 25 0 460 276 59 6 chr11 14551992 14552162 -136231391 - MIR SINE MIR -30 232 54 42758 59 3 4 chr11 14553726 14556665 -136226888 + L1P2 LINE L1 1 2930 -3224 2577 68 0 0 chr11 14556665 14556973 -136226580 + AluY SINE Alu 2 309 -2 42758 59 3 4 chr11 14556973 14559801 -136223752 + L1P2 LINE L1 2930 5760 -394 2594 127 3 0 chr11 14760647 14761010 -136022543 - THE1B LTR MaLR 0 364 1 628 78 0 0 chr11 14761010 14761100 -136022453 - THE1B-int LTR MaLR 0 1580 1491 356 30 15 164 chr11 14761201 14761268 -136022285 + LTR12 LTR ERV1 357 714 0 742 193 27 13 chr11 14761271 14761421 -136022132 + HERV9 LTR ERV1 2 153 -8246 * 10068 92 4 5 chr11 14761420 14762774 -136020779 + HERV9 LTR ERV1 1283 2635 -5764 390 69 0 0 chr11 14763379 14763437 -136020116 + (TA)n Simple_repeat Simple_repeat 2 59 0 1993 145 0 10 chr11 14763451 14763747 -136019806 - AluSx SINE Alu -19 293 1 2248 129 0 0 chr11 14763757 14764059 -136019494 - AluSg SINE Alu -8 302 1 1881 160 3 22 chr11 14764246 14764564 -136018989 - AluJb SINE Alu 0 312 1 377 125 14 28 chr11 14764568 14764640 -136018913 + HsTC2 DNA Tc2 1825 1895 -3 712 185 8 0 chr11 14765008 14765127 -136018426 + FLAM_A SINE Alu 2 121 -12 811 159 130 0 chr11 14765150 14765338 -136018215 + L1MC4a LINE L1 5218 5426 -744 2247 116 0 0 chr11 14765465 14765758 -136017795 + AluSg SINE Alu 1 293 -17 2436 97 0 0 chr11 14765765 14766075 -136017478 + AluSx SINE Alu 1 310 -2 1415 314 63 21 chr11 14766094 14766888 -136016665 + L1MEc LINE L1 136 962 -5434 496 191 52 43 chr11 14766889 14767004 -136016549 - MER105 DNA DNA 0 204 89 314 230 7 53 chr11 14767108 14767260 -136016293 + L1MEc LINE L1 966 1110 -5286 259 188 0 21 chr11 14767270 14767318 -136016235 + Alu SINE Alu 1 47 -254 1112 195 15 10 chr11 14767432 14767485 -136016068 + AluJb SINE Alu 85 136 -176 2091 112 14 7 chr11 14767485 14767780 -136015773 + AluSx SINE Alu 3 299 -13 1112 195 15 10 chr11 14767780 14767931 -136015622 + AluJb SINE Alu 136 290 -22 272 236 0 0 chr11 14768713 14768768 -136014785 + MLT1K LTR MaLR 532 586 -2 217 186 118 60 chr11 14769241 14769426 -136014127 + MER5C DNA MER1_type 67 320 -4 229 302 93 54 chr11 14769844 14770122 -136013431 + L2 LINE L2 2015 2303 -1011 916 98 28 28 chr11 14770656 14770799 -136012754 - AluSg/x SINE Alu -25 285 143 334 219 167 0 chr11 14770799 14770913 -136012640 - MIR SINE MIR -122 140 8 21 0 0 0 chr11 14770998 14771019 -136012534 + AT_rich Low_complexity Low_complexity 1 21 0 498 256 84 73 chr11 14771117 14771390 -136012163 + L1MC4a LINE L1 5600 5875 -1933 335 279 50 50 chr11 14771602 14771763 -136011790 + MIR3 SINE MIR 38 198 -10 508 276 114 5 chr11 14772082 14772292 -136011261 + MIR SINE MIR 17 249 -13 2147 276 121 11 chr11 14772600 14773826 -136009727 - L2 LINE L2 -3 3310 1947 635 158 117 0 chr11 14773925 14774045 -136009508 + MER94 DNA DNA 1 134 0 870 184 40 17 chr11 14774324 14774498 -136009055 + AluJo SINE Alu 1 178 -134 434 264 87 14 chr11 14774838 14775046 -136008507 + L2 LINE L2 2087 2309 -1005 782 253 67 22 chr11 14775048 14775360 -136008193 + L2 LINE L2 2452 2777 -537 201 167 0 0 chr11 14775411 14775447 -136008106 + (TTAA)n Simple_repeat Simple_repeat 2 37 0 2246 120 13 0 chr11 14775608 14775917 -136007636 - AluSq SINE Alu 0 313 1 1792 243 122 23 chr11 14777109 14777255 -136006298 - L2 LINE L2 -2 3311 3181 1740 179 6 13 chr11 14777255 14777568 -136005985 + AluJo SINE Alu 1 311 -1 1792 243 122 23 chr11 14777568 14778490 -136005063 - L2 LINE L2 -132 3181 2156 2736 175 56 67 chr11 14778635 14779405 -136004148 - L1MB8 LINE L1 -290 5888 5111 2067 144 0 3 chr11 14779405 14779703 -136003850 - AluSx SINE Alu -15 297 1 2736 175 56 67 chr11 14779703 14779760 -136003793 - L1MB8 LINE L1 -1067 5111 5055 2208 125 3 0 chr11 14779760 14780071 -136003482 - AluSx SINE Alu 0 312 1 2736 175 56 67 chr11 14780071 14780166 -136003387 - L1MB8 LINE L1 -1123 5055 4985 2195 118 0 0 chr11 14780476 14780764 -136002789 + AluSx SINE Alu 1 288 -24 1211 219 75 14 chr11 14781335 14781457 -136002096 + AluJo SINE Alu 1 114 -198 429 20 0 0 chr11 14781457 14781507 -136002046 + (TAAA)n Simple_repeat Simple_repeat 2 51 0 1211 219 75 14 chr11 14781507 14781663 -136001890 + AluJo SINE Alu 114 296 -16 2290 99 0 0 chr11 14781666 14781971 -136001582 + AluSg SINE Alu 1 305 0 198 0 0 0 chr11 14782284 14782306 -136001247 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 2096 150 0 0 chr11 14782385 14782685 -136000868 + AluJb SINE Alu 2 301 -11 26 0 0 0 chr11 14782705 14782731 -136000822 + AT_rich Low_complexity Low_complexity 1 26 0 1082 132 6 12 chr11 14782867 14783034 -136000519 + AluY SINE Alu 1 166 -145 251 188 0 16 chr11 14783870 14783934 -135999619 + (TTCA)n Simple_repeat Simple_repeat 1 63 0 531 327 41 5 chr11 14784026 14784246 -135999307 - MIR SINE MIR -15 247 20 188 251 149 59 chr11 14784508 14784763 -135998790 + L2 LINE L2 382 659 -2655 378 291 14 28 chr11 14785214 14785355 -135998198 - MER5A DNA MER1_type -34 155 17 1045 230 14 10 chr11 14785508 14785717 -135997836 + MER63A DNA MER1_type 1 210 0 2197 126 3 0 chr11 14785873 14786167 -135997386 + AluSx SINE Alu 1 295 -17 21 57 0 0 chr11 14786257 14786292 -135997261 + AT_rich Low_complexity Low_complexity 1 35 0 347 259 43 65 chr11 14786875 14787014 -135996539 - L2 LINE L2 0 3272 3137 1992 123 3 23 chr11 14787315 14787670 -135995883 + AluSq SINE Alu 1 313 0 1850 164 3 10 chr11 14787671 14787976 -135995577 + AluJo SINE Alu 1 303 -9 1964 131 13 29 chr11 14787979 14788285 -135995268 + AluSx SINE Alu 1 301 -11 207 202 36 24 chr11 14788299 14788383 -135995170 + GA-rich Low_complexity Low_complexity 5 89 0 589 249 83 76 chr11 14789769 14790046 -135993507 + MLT1L LTR MaLR 46 324 -291 652 233 109 101 chr11 14790073 14790259 -135993294 + MLT1L LTR MaLR 252 435 -180 1825 74 0 0 chr11 14790259 14790489 -135993064 - L1PA8 LINE L1 -4 6168 5939 652 233 109 101 chr11 14790489 14790502 -135993051 + MLT1L LTR MaLR 435 446 -169 2456 89 3 0 chr11 14790502 14790806 -135992747 - AluSp SINE Alu -8 305 1 652 233 109 101 chr11 14790806 14790953 -135992600 + MLT1L LTR MaLR 446 602 -13 180 0 0 0 chr11 14790965 14790985 -135992568 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1755 146 52 4 chr11 14790989 14791257 -135992296 - AluJb SINE Alu -31 281 1 180 233 75 83 chr11 14791282 14791402 -135992151 - L2 LINE L2 -97 3216 3098 689 234 0 0 chr11 14791582 14791723 -135991830 + FLAM_C SINE Alu 2 142 -1 492 276 13 39 chr11 14792580 14792736 -135990817 + LTR16C LTR ERVL 340 491 0 308 309 12 0 chr11 14792762 14792846 -135990707 + HAL1 LINE L1 237 321 -2186 2491 208 76 6 chr11 14792976 14793604 -135989949 - L1MC4 LINE L1 -6 8036 7282 290 226 9 49 chr11 14793611 14793719 -135989834 - L1MC4a LINE L1 -562 7291 7147 254 161 36 0 chr11 14793694 14793750 -135989803 - L1MC4 LINE L1 -954 7088 7031 * 312 140 0 18 chr11 14793750 14793807 -135989746 - MLT2B1 LTR ERVL -1 519 464 24 67 0 0 chr11 14793814 14793859 -135989694 + AT_rich Low_complexity Low_complexity 1 45 0 1050 171 0 0 chr11 14793913 14794083 -135989470 - AluJb SINE Alu -9 303 134 2117 132 3 0 chr11 14794083 14794379 -135989174 - AluSx SINE Alu -15 297 1 2288 104 0 10 chr11 14794387 14794694 -135988859 - AluSq SINE Alu -9 304 1 1572 181 84 36 chr11 14794701 14795085 -135988468 - MLT2B1 LTR ERVL -55 359 1 1466 173 0 12 chr11 14795085 14795328 -135988225 - L1MC4 LINE L1 -1008 7034 6795 932 148 0 39 chr11 14795334 14795526 -135988027 - AluSc SINE Alu 0 316 131 411 73 0 0 chr11 14795526 14795581 -135987972 + (TG)n Simple_repeat Simple_repeat 2 56 0 671 116 5 63 chr11 14795581 14795771 -135987782 + (TA)n Simple_repeat Simple_repeat 2 180 0 21 0 0 0 chr11 14795788 14795809 -135987744 + AT_rich Low_complexity Low_complexity 1 21 0 766 107 0 0 chr11 14795809 14795912 -135987641 - AluJb SINE Alu -187 125 23 513 216 11 224 chr11 14795920 14796108 -135987445 - L1MC4a LINE L1 -1090 6718 6678 342 62 0 21 chr11 14796108 14796156 -135987397 - MER50 LTR ERV1 -189 545 499 513 216 11 224 chr11 14796156 14796300 -135987253 - L1MC4a LINE L1 -1130 6678 6505 2531 79 0 0 chr11 14796374 14796677 -135986876 - AluY SINE Alu -8 303 1 26 0 0 0 chr11 14796813 14796839 -135986714 + AT_rich Low_complexity Low_complexity 1 26 0 2130 147 0 0 chr11 14796859 14797159 -135986394 - AluJb SINE Alu -11 301 2 261 298 177 7 chr11 14797953 14798094 -135985459 + MIR SINE MIR 47 211 -51 366 179 98 18 chr11 14798688 14798800 -135984753 + L1ME4a LINE L1 5998 6118 -3 22 35 0 0 chr11 14798800 14798829 -135984724 + AT_rich Low_complexity Low_complexity 1 29 0 377 252 62 20 chr11 14799527 14799675 -135983878 - MIR SINE MIR -65 143 38 385 202 0 24 chr11 14799726 14799810 -135983743 - Tigger5 DNA MER2_type 0 2323 2242 1583 210 32 4 chr11 14799814 14800095 -135983458 - Tigger5 DNA MER2_type -2034 289 1 1714 199 151 23 chr11 14800158 14800596 -135982957 - MLT1D LTR MaLR -9 496 3 617 213 8 0 chr11 14800602 14800762 -135982791 - FLAM_A SINE Alu 0 161 1 668 221 46 16 chr11 14801075 14801268 -135982285 - MIR SINE MIR -12 250 49 1188 269 76 8 chr11 14801802 14802199 -135981354 - LTR16A LTR ERVL -8 442 19 207 185 19 176 chr11 14802639 14802747 -135980806 - L2 LINE L2 -3 3310 3220 213 273 102 11 chr11 14803066 14803154 -135980399 + L2 LINE L2 3160 3255 -17 227 323 50 0 chr11 14803155 14803254 -135980299 - MIR SINE MIR -122 140 37 471 82 0 0 chr11 14803370 14803443 -135980110 + (TG)n Simple_repeat Simple_repeat 2 74 0 254 194 15 0 chr11 14804182 14804249 -135979304 + CT-rich Low_complexity Low_complexity 1 68 0 1853 137 0 78 chr11 14804259 14804566 -135978987 - AluJo SINE Alu -29 283 1 2377 106 0 0 chr11 14804575 14804886 -135978667 - AluY SINE Alu 0 311 1 216 86 0 0 chr11 14805426 14805461 -135978092 + (TG)n Simple_repeat Simple_repeat 1 35 0 558 253 71 50 chr11 14805588 14805869 -135977684 + L2 LINE L2 3027 3313 0 374 306 112 16 chr11 14806046 14806304 -135977249 + L2 LINE L2 1575 1857 -1457 521 240 87 10 chr11 14806433 14806641 -135976912 + L2 LINE L2 2086 2309 -1005 823 244 67 22 chr11 14806643 14806955 -135976598 + L2 LINE L2 2452 2777 -537 201 167 0 0 chr11 14807006 14807042 -135976511 + (TTAA)n Simple_repeat Simple_repeat 4 39 0 2110 137 13 0 chr11 14807206 14807512 -135976041 - AluSq SINE Alu -3 310 1 1924 116 4 14 chr11 14807670 14807946 -135975607 - AluSq SINE Alu -40 273 1 1804 172 7 3 chr11 14808194 14808502 -135975051 - AluJo SINE Alu -3 309 1 1318 239 74 29 chr11 14809233 14809680 -135973873 + MLT1C LTR MaLR 1 467 0 2240 94 23 0 chr11 14810465 14810764 -135972789 - AluSx SINE Alu -6 306 1 3270 157 47 5 chr11 14810900 14811518 -135972035 + L1MC3 LINE L1 6126 6333 -11 1680 191 3 10 chr11 14812239 14812527 -135971026 + AluJo SINE Alu 1 286 -26 204 242 95 63 chr11 14812637 14812732 -135970821 - L2 LINE L2 -56 3257 3160 246 221 12 58 chr11 14812752 14812838 -135970715 - HsTC2 DNA Tc2 -1814 84 3 2418 91 0 0 chr11 14813079 14813376 -135970177 + AluSq SINE Alu 1 297 -16 749 247 0 0 chr11 14813566 14813728 -135969825 + FRAM SINE Alu 1 162 -4 1951 139 0 14 chr11 14813998 14814313 -135969240 + AluSx SINE Alu 1 311 0 727 224 139 15 chr11 14814694 14814895 -135968658 - MIR SINE MIR -23 239 14 2848 16 0 0 chr11 14815127 14815439 -135968114 - AluYb8 SINE Alu -6 312 1 2280 88 7 0 chr11 14816680 14816974 -135966579 + AluSx SINE Alu 1 296 -16 184 319 150 12 chr11 14817768 14817928 -135965625 - L2 LINE L2 -19 3294 3113 1807 153 3 41 chr11 14817932 14818246 -135965307 + AluJb SINE Alu 2 303 -9 746 236 44 93 chr11 14818842 14818947 -135964606 + L1ME1 LINE L1 3342 3451 -2695 1735 178 0 36 chr11 14818947 14819250 -135964303 + AluJb SINE Alu 1 292 -20 746 236 44 93 chr11 14819250 14819715 -135963838 + L1ME1 LINE L1 3451 3884 -2262 294 262 166 7 chr11 14819769 14819914 -135963639 + L1ME1 LINE L1 4012 4179 -1967 430 279 126 49 chr11 14820046 14820394 -135963159 + L1ME1 LINE L1 4315 4689 -1457 398 215 93 19 chr11 14820401 14820508 -135963045 + L2 LINE L2 3195 3309 -4 445 258 70 48 chr11 14820556 14820742 -135962811 + L1ME1 LINE L1 4767 4956 -1190 253 306 97 37 chr11 14820938 14821072 -135962481 + MIR SINE MIR 40 181 -81 2282 52 42 0 chr11 14821093 14821381 -135962172 - AluY SINE Alu -11 300 1 22 0 0 0 chr11 14822167 14822189 -135961364 + AT_rich Low_complexity Low_complexity 1 22 0 2754 13 0 3 chr11 14822561 14822868 -135960685 + AluYa5 SINE Alu 1 306 -5 428 209 19 0 chr11 14823995 14824100 -135959453 + (CATATA)n Simple_repeat Simple_repeat 2 108 0 2096 119 3 14 chr11 14824102 14824396 -135959157 - AluSq SINE Alu -22 291 1 471 213 97 14 chr11 14824415 14824588 -135958965 + MER69 DNA AcHobo 1 2520 -6 27 0 0 0 chr11 14824699 14824726 -135958827 + AT_rich Low_complexity Low_complexity 1 27 0 1628 202 0 28 chr11 14824770 14825087 -135958466 + AluJo SINE Alu 1 308 -4 1265 136 17 15 chr11 14825272 14825507 -135958046 + AluJb SINE Alu 1 297 -15 763 219 30 0 chr11 14825894 14826063 -135957490 - FRAM SINE Alu -2 174 1 789 153 15 8 chr11 14826541 14826672 -135956881 + FLAM_A SINE Alu 2 133 0 1900 214 75 11 chr11 14826733 14827335 -135956218 + L1ME1 LINE L1 5192 5830 -334 1078 123 0 7 chr11 14827335 14827489 -135956064 + AluJb SINE Alu 135 287 -25 481 194 15 23 chr11 14827499 14827755 -135955798 + L1ME1 LINE L1 5811 6103 -63 359 308 176 33 chr11 14828076 14828378 -135955175 - L1ME4a LINE L1 -237 5884 5540 305 246 36 0 chr11 14828416 14828526 -135955027 - L1ME4a LINE L1 -12 6109 5996 1499 146 73 11 chr11 14828637 14828912 -135954641 - AluJb SINE Alu -20 292 1 326 294 81 38 chr11 14829146 14829306 -135954247 - L1ME4a LINE L1 -570 5551 5385 282 56 0 0 chr11 14829507 14829543 -135954010 + (CA)n Simple_repeat Simple_repeat 1 36 0 253 296 194 35 chr11 14829729 14830418 -135953135 + L2 LINE L2 1562 2360 -954 4852 205 149 17 chr11 14830585 14832074 -135951479 + L1MDa LINE L1 19 1983 -4557 3147 146 91 54 chr11 14832074 14832754 -135950799 + MER44D DNA MER2_type 1 705 0 4852 205 149 17 chr11 14832754 14833197 -135950356 + L1MDa LINE L1 1983 2366 -4174 506 209 98 52 chr11 14833198 14833290 -135950263 - MIR SINE MIR -89 173 70 1708 159 31 25 chr11 14833290 14833649 -135949904 - MER46B DNA MER2_type 0 236 1 506 209 98 52 chr11 14833649 14833709 -135949844 - MIR SINE MIR -192 70 14 1757 193 79 23 chr11 14833887 14834142 -135949411 + LTR54 LTR ERV1 1 240 -270 796 129 15 23 chr11 14834142 14834274 -135949279 + FLAM_C SINE Alu 3 133 0 1757 193 79 23 chr11 14834274 14834501 -135949052 + LTR54 LTR ERV1 240 510 0 275 206 254 8 chr11 14834501 14834626 -135948927 + Charlie4 DNA MER1_type 90 245 -1716 23 68 0 0 chr11 14834679 14834723 -135948830 + AT_rich Low_complexity Low_complexity 1 44 0 329 193 11 0 chr11 14834725 14834813 -135948740 + Charlie4 DNA MER1_type 1803 1891 -70 658 137 0 0 chr11 14834813 14834915 -135948638 + AluJ/FLAM SINE Alu 1 102 -210 1088 195 35 10 chr11 14835023 14835414 -135948139 - L1M3 LINE L1 -641 5539 5139 1714 168 42 3 chr11 14835440 14835726 -135947827 - AluJo SINE Alu -15 297 1 2320 90 0 0 chr11 14836142 14836441 -135947112 + AluSx SINE Alu 1 299 -13 190 254 17 51 chr11 14836624 14836683 -135946870 + MER5A DNA MER1_type 47 103 -86 629 211 133 6 chr11 14837337 14837503 -135946050 - MER5A DNA MER1_type -1 188 2 583 270 91 123 chr11 14837559 14837609 -135945944 - MLT1K LTR MaLR -6 582 532 1563 144 0 0 chr11 14837609 14837845 -135945708 + MER46A DNA MER2_type 1 236 0 583 270 91 123 chr11 14837845 14838042 -135945511 - MLT1K LTR MaLR -56 532 330 801 183 146 0 chr11 14838042 14838206 -135945347 - MER5A DNA MER1_type 0 189 2 583 270 91 123 chr11 14838206 14838549 -135945004 - MLT1K LTR MaLR -258 330 10 245 332 54 46 chr11 14838643 14838848 -135944705 + MIR SINE MIR 3 212 -50 2120 137 0 0 chr11 14838880 14839173 -135944380 - AluSx SINE Alu -19 293 1 578 243 143 68 chr11 14839410 14839780 -135943773 + LTR16C LTR ERVL 94 491 0 1060 250 62 19 chr11 14839799 14840167 -135943386 + L1MC4a LINE L1 5579 5962 -1846 1354 90 37 0 chr11 14840214 14840402 -135943151 - AluSq SINE Alu -5 308 114 2493 81 0 0 chr11 14840475 14840783 -135942770 - AluY SINE Alu -3 308 1 339 198 167 10 chr11 14841196 14841292 -135942261 - MIR SINE MIR -65 143 33 335 191 0 0 chr11 14841641 14841704 -135941849 + L2 LINE L2 3210 3272 0 389 268 309 6 chr11 14842038 14842206 -135941347 + MIR SINE MIR 32 250 -12 283 205 0 72 chr11 14842792 14842875 -135940678 + (TCTCTG)n Simple_repeat Simple_repeat 4 80 0 497 108 0 137 chr11 14843285 14843368 -135940185 + FLAM_A SINE Alu 40 108 -203 2492 80 0 0 chr11 14843368 14843668 -135939885 - AluSq SINE Alu -13 300 1 497 108 0 137 chr11 14843668 14843686 -135939867 + FLAM_A SINE Alu 108 127 -184 27 0 0 0 chr11 14843744 14843771 -135939782 + AT_rich Low_complexity Low_complexity 1 27 0 346 237 23 30 chr11 14843942 14844073 -135939480 + L1MC/D LINE L1 5527 5656 -465 241 265 0 2 chr11 14844903 14844962 -135938591 + MLT1J1 LTR MaLR 71 123 -323 246 192 0 0 chr11 14845276 14845328 -135938225 + (TA)n Simple_repeat Simple_repeat 2 53 0 195 42 0 0 chr11 14845328 14845352 -135938201 + (GA)n Simple_repeat Simple_repeat 2 25 0 316 239 45 23 chr11 14845384 14845472 -135938081 + L1MC/D LINE L1 5724 5813 -308 1868 150 25 0 chr11 14845899 14846185 -135937368 + AluJo SINE Alu 1 293 -19 898 149 0 22 chr11 14846202 14846336 -135937217 + AluJo SINE Alu 6 136 -176 2271 95 0 0 chr11 14846336 14846649 -135936904 + AluSx SINE Alu 1 313 0 327 134 0 85 chr11 14846652 14846734 -135936819 + AluJ/FRAM SINE Alu 228 302 0 613 281 13 47 chr11 14847272 14847509 -135936044 + L1ME4a LINE L1 5593 5819 -302 2186 119 0 0 chr11 14847509 14847811 -135935742 + AluSx SINE Alu 1 302 -10 613 281 13 47 chr11 14847811 14847872 -135935681 + L1ME4a LINE L1 5819 5881 -240 24 0 0 0 chr11 14848150 14848174 -135935379 + AT_rich Low_complexity Low_complexity 1 24 0 310 291 145 45 chr11 14848920 14849099 -135934454 + MIR SINE MIR 35 231 -31 333 240 0 10 chr11 14849491 14849587 -135933966 + MER113 DNA MER1_type? 6 100 -421 1882 117 78 33 chr11 14849747 14850106 -135933447 - THE1C LTR MaLR 0 375 1 270 255 94 73 chr11 14850203 14850395 -135933158 - MIR3 SINE MIR -10 198 3 229 250 19 0 chr11 14850908 14850960 -135932593 + MER91 DNA MER1_type 135 187 -3 404 207 135 9 chr11 14851285 14851396 -135932157 + MIR3 SINE MIR 11 135 -73 2240 112 0 0 chr11 14851440 14851736 -135931817 + AluSx SINE Alu 1 296 -16 203 228 88 0 chr11 14851878 14851935 -135931618 - MIR SINE MIR -108 100 39 637 296 109 39 chr11 14852135 14852354 -135931199 - L2 LINE L2 -627 2687 2436 2437 141 23 28 chr11 14852354 14852781 -135930772 + MER61B LTR ERV1 1 425 0 637 296 109 39 chr11 14852781 14852892 -135930661 - L2 LINE L2 -878 2436 2334 422 326 39 33 chr11 14853069 14853250 -135930303 + MIR SINE MIR 5 186 -76 2196 129 19 16 chr11 14853348 14853712 -135929841 + MLT1A1 LTR MaLR 1 365 0 550 271 169 4 chr11 14853777 14854002 -135929551 + MIR SINE MIR 1 262 0 197 311 0 0 chr11 14854011 14854056 -135929497 + L2 LINE L2 3217 3261 -11 756 293 87 14 chr11 14854776 14855145 -135928408 - MLT1L LTR MaLR 0 615 220 204 290 58 14 chr11 14855193 14855262 -135928291 - L2 LINE L2 -534 2780 2709 691 192 15 8 chr11 14855274 14855404 -135928149 - FLAM_C SINE Alu -12 131 1 676 304 283 19 chr11 14855406 14856248 -135927305 - L2 LINE L2 -601 2713 1650 2197 114 3 0 chr11 14856719 14857009 -135926544 - AluSx SINE Alu -19 293 3 284 320 0 0 chr11 14859081 14859156 -135924397 + L3 LINE CR1 1501 1575 -2 302 293 95 17 chr11 14859234 14859350 -135924203 + MIR SINE MIR 64 188 -74 775 161 13 13 chr11 14859575 14859730 -135923823 - L1MB3 LINE L1 -13 6170 6016 2339 94 7 3 chr11 14859892 14860199 -135923354 + AluSg SINE Alu 3 310 0 743 274 25 59 chr11 14860530 14860767 -135922786 + MIR SINE MIR 1 228 -34 23 0 0 0 chr11 14860874 14860897 -135922656 + AT_rich Low_complexity Low_complexity 1 23 0 323 275 76 55 chr11 14861470 14861706 -135921847 - L2 LINE L2 -203 3069 2829 4962 241 78 61 chr11 14862194 14863296 -135920257 - L1MDa LINE L1 -1809 4406 3324 841 158 0 34 chr11 14863296 14863442 -135920111 - FLAM_C SINE Alu -2 141 1 4962 241 78 61 chr11 14863442 14864711 -135918842 - L1MDa LINE L1 -2891 3324 2078 781 199 0 0 chr11 14864711 14864842 -135918711 + FLAM_A SINE Alu 1 131 -2 4962 241 78 61 chr11 14864842 14866037 -135917516 - L1MDa LINE L1 -4137 2078 469 2339 115 0 0 chr11 14867033 14867345 -135916208 + AluSx SINE Alu 1 312 0 1684 193 7 10 chr11 14867417 14867722 -135915831 - AluJb SINE Alu -8 304 1 215 244 154 0 chr11 14868376 14868454 -135915099 - L2 LINE L2 0 3313 3224 212 260 233 0 chr11 14869088 14869161 -135914392 + L2 LINE L2 3223 3312 -1 2089 106 7 23 chr11 14869612 14869914 -135913639 + AluSg SINE Alu 1 297 -13 1447 260 219 20 chr11 14870013 14870798 -135912755 - L2 LINE L2 -1177 2137 1197 2203 115 49 14 chr11 14871254 14871603 -135911950 - MER46B DNA MER2_type 0 236 1 2421 74 0 3 chr11 14872268 14872564 -135910989 + AluY SINE Alu 1 295 -16 342 0 0 0 chr11 14872567 14872605 -135910948 + (TA)n Simple_repeat Simple_repeat 2 39 0 2166 105 76 15 chr11 14872888 14873231 -135910322 + THE1B LTR MaLR 1 364 0 22 0 0 0 chr11 14873386 14873408 -135910145 + AT_rich Low_complexity Low_complexity 1 22 0 1614 170 16 35 chr11 14875334 14875646 -135907907 + AluJo SINE Alu 1 306 -6 24 0 0 0 chr11 14875649 14875673 -135907880 + AT_rich Low_complexity Low_complexity 1 24 0 816 168 0 15 chr11 14876355 14876486 -135907067 + AluJb SINE Alu 167 295 -17 1566 182 46 14 chr11 14876935 14877215 -135906338 + AluJo SINE Alu 1 289 -23 24 0 0 0 chr11 14877215 14877239 -135906314 + AT_rich Low_complexity Low_complexity 1 24 0 323 277 103 0 chr11 14878418 14878561 -135904992 + MIR SINE MIR 49 210 -52 514 214 32 40 chr11 14878769 14878895 -135904658 + L1ME3 LINE L1 6028 6152 -10 1195 107 66 66 chr11 14879826 14880022 -135903531 + AluJb SINE Alu 87 282 -30 185 215 87 81 chr11 14880856 14881005 -135902548 + L2 LINE L2 3077 3226 -87 2221 101 7 19 chr11 14881139 14881447 -135902106 + AluSx SINE Alu 1 304 -8 402 21 0 0 chr11 14881507 14881554 -135901999 + (CA)n Simple_repeat Simple_repeat 1 47 0 278 237 35 61 chr11 14881848 14881962 -135901591 + MIR SINE MIR 21 131 -131 431 322 36 30 chr11 14882255 14882491 -135901062 + MIR SINE MIR 9 249 -13 676 194 0 8 chr11 14882898 14883022 -135900531 + FLAM_C SINE Alu 2 124 -19 1009 231 64 16 chr11 14884726 14885037 -135898516 - L2 LINE L2 -1111 2203 1878 257 302 161 13 chr11 14885600 14885749 -135897804 + MIR SINE MIR 13 183 -79 246 294 149 72 chr11 14886079 14886314 -135897239 + MIR SINE MIR 10 262 0 619 280 60 36 chr11 14887413 14887586 -135895967 - MIR SINE MIR 0 262 80 2077 135 3 0 chr11 14887586 14887883 -135895670 + AluJb SINE Alu 1 298 -14 619 280 60 36 chr11 14887883 14887959 -135895594 - MIR SINE MIR -182 80 7 370 314 99 17 chr11 14887960 14888270 -135895283 + L1ME LINE L1 5445 5725 -396 267 114 0 0 chr11 14888695 14888730 -135894823 - U2 snRNA snRNA -153 35 1 423 0 0 0 chr11 14888732 14888779 -135894774 + (TG)n Simple_repeat Simple_repeat 2 48 0 2234 115 3 0 chr11 14892381 14892677 -135890876 + AluSc SINE Alu 1 297 -12 1238 180 5 9 chr11 14892691 14892908 -135890645 + AluJb SINE Alu 85 300 -12 328 191 96 0 chr11 14894437 14894531 -135889022 - MIR SINE MIR -49 213 111 252 316 101 74 chr11 14894835 14895161 -135888392 - L2 LINE L2 -49 3223 2889 1662 160 44 7 chr11 14895268 14895543 -135888010 + AluJo SINE Alu 1 285 -27 1314 289 121 35 chr11 14895548 14896538 -135887015 - L2 LINE L2 -556 2758 1684 259 275 108 24 chr11 14897918 14898085 -135885468 - MIR SINE MIR -34 228 48 22 35 0 0 chr11 14898952 14898981 -135884572 + AT_rich Low_complexity Low_complexity 1 29 0 323 367 59 34 chr11 14899055 14899292 -135884261 - L2 LINE L2 -2 3270 3028 317 239 174 0 chr11 14900132 14900241 -135883312 - MIR SINE MIR -70 192 65 236 280 54 21 chr11 14900853 14900946 -135882607 - L2 LINE L2 -181 3091 2996 905 183 46 0 chr11 14900953 14901128 -135882425 - MER5A DNA MER1_type -6 183 1 472 263 23 69 chr11 14901466 14901683 -135881870 - MIR SINE MIR -35 227 21 233 317 141 7 chr11 14901842 14901984 -135881569 + MIR SINE MIR 38 198 -64 790 177 0 0 chr11 14902316 14902446 -135881107 + FRAM SINE Alu 40 169 -7 803 289 18 0 chr11 14903263 14903481 -135880072 + MER58A DNA MER1_type 1 222 -2 2273 125 0 0 chr11 14904107 14904412 -135879141 + AluSq SINE Alu 1 305 -8 337 250 12 12 chr11 14904491 14904575 -135878978 + MER117 DNA MER1_type 114 197 0 424 335 45 0 chr11 14904854 14905009 -135878544 + L1ME LINE L1 5533 5694 -427 748 216 126 0 chr11 14905251 14905450 -135878103 + MIR SINE MIR 26 249 -13 327 227 118 18 chr11 14909570 14909680 -135873873 + MIR SINE MIR 77 197 -65 251 246 43 0 chr11 14909965 14910034 -135873519 - MIR SINE MIR -70 192 121 283 234 64 74 chr11 14910620 14910794 -135872759 + MIR SINE MIR 19 192 -66 189 0 0 0 chr11 14911196 14911217 -135872336 + (A)n Simple_repeat Simple_repeat 1 21 0 251 305 120 55 chr11 14911767 14911889 -135871664 - L2 LINE L2 -181 3091 2978 2339 101 0 7 chr11 14911889 14912197 -135871356 + AluSq SINE Alu 1 306 -7 251 305 120 55 chr11 14912197 14912441 -135871112 - L2 LINE L2 -294 2978 2704 235 191 21 0 chr11 14912753 14912800 -135870753 - L2 LINE L2 -2 3311 3264 180 312 91 13 chr11 14912935 14913012 -135870541 - L2 LINE L2 -199 3073 2991 813 257 209 23 chr11 14913089 14913495 -135870058 - MLT1H LTR MaLR -13 536 12 199 244 0 0 chr11 14914069 14914110 -135869443 - L3 LINE CR1 -204 1373 1333 21 0 0 0 chr11 14914464 14914485 -135869068 + AT_rich Low_complexity Low_complexity 1 21 0 2340 122 87 44 chr11 14916408 14916844 -135866709 + MSTB2 LTR MaLR 1 455 -2 2298 89 0 3 chr11 14916937 14917229 -135866324 - AluSp SINE Alu -21 292 2 183 42 0 0 chr11 14918846 14918870 -135864683 + (TAAAAA)n Simple_repeat Simple_repeat 3 26 0 371 302 31 0 chr11 14919559 14919655 -135863898 + MIR SINE MIR 54 152 -110 21 36 0 0 chr11 14920518 14920546 -135863007 + AT_rich Low_complexity Low_complexity 1 28 0 1692 140 0 34 chr11 14920798 14921132 -135862421 + AluJb SINE Alu 1 324 0 1750 123 36 18 chr11 14921136 14921413 -135862140 + AluJb SINE Alu 22 303 -9 2186 116 13 0 chr11 14922240 14922542 -135861011 - AluSx SINE Alu -6 306 1 1056 166 52 0 chr11 14923916 14924127 -135859426 + L1MA8 LINE L1 6070 6291 0 1680 178 0 27 chr11 14924129 14924427 -135859126 + AluJo SINE Alu 1 290 -22 24 0 0 0 chr11 14924430 14924454 -135859099 + AT_rich Low_complexity Low_complexity 1 24 0 1494 161 18 25 chr11 14924804 14925083 -135858470 + AluJo SINE Alu 11 287 -25 22 56 0 0 chr11 14925083 14925119 -135858434 + AT_rich Low_complexity Low_complexity 1 36 0 3795 194 89 109 chr11 14925496 14926217 -135857336 - L1MC4a LINE L1 -505 7303 6569 1502 66 0 0 chr11 14926217 14926400 -135857153 - AluY SINE Alu -7 304 122 2188 98 3 35 chr11 14926402 14926718 -135856835 - AluY SINE Alu -5 306 1 3795 194 89 109 chr11 14926718 14927453 -135856100 - L1MC4a LINE L1 -1240 6568 5873 2480 121 28 15 chr11 14927460 14927856 -135855697 + MSTB1 LTR MaLR 7 407 -25 1179 171 69 9 chr11 14927859 14928076 -135855477 + MER30 DNA MER1_type 1 230 0 590 228 232 13 chr11 14928105 14928329 -135855224 - L1MC4a LINE L1 -1937 5871 5599 1162 201 124 35 chr11 14928362 14928700 -135854853 + L1MC4 LINE L1 7445 7812 -230 2306 96 0 10 chr11 14928701 14929002 -135854551 + AluSq SINE Alu 1 298 -15 1371 82 0 0 chr11 14929002 14929172 -135854381 + AluSg/x SINE Alu 134 303 -9 689 176 85 7 chr11 14929179 14929332 -135854221 + L1MC4 LINE L1 7809 7973 -69 23 0 0 0 chr11 14929584 14929607 -135853946 + AT_rich Low_complexity Low_complexity 1 23 0 366 23 0 0 chr11 14930013 14930056 -135853497 + (GA)n Simple_repeat Simple_repeat 2 44 0 2122 108 3 14 chr11 14930058 14930355 -135853198 - AluSx SINE Alu -18 294 1 1651 110 15 46 chr11 14930603 14930866 -135852687 + AluSq SINE Alu 44 298 -15 205 179 0 0 chr11 14930912 14930951 -135852602 + (CA)n Simple_repeat Simple_repeat 2 40 0 2394 104 0 3 chr11 14931925 14932233 -135851320 - AluSx SINE Alu -5 307 1 453 257 62 45 chr11 14932233 14932412 -135851141 - MIR SINE MIR -10 252 71 864 193 57 28 chr11 14933237 14933449 -135850104 - MIR SINE MIR -10 252 35 419 243 36 77 chr11 14933762 14933920 -135849633 - MIR SINE MIR -40 168 14 2262 70 49 0 chr11 14934058 14934342 -135849211 - AluSg SINE Alu -12 298 1 309 243 104 131 chr11 14935856 14936193 -135847360 + L1M2 LINE L1 773 1100 -5749 * 384 230 59 166 chr11 14936156 14936548 -135847005 - L1M2 LINE L1 -5934 915 566 647 99 0 0 chr11 14937048 14937129 -135846424 - AluJ/FLAM SINE Alu -230 82 2 198 231 205 26 chr11 14937129 14937207 -135846346 + MIR SINE MIR 163 254 -8 740 239 85 11 chr11 14937234 14937422 -135846131 + MLT1H1 LTR MaLR 91 292 -263 524 236 66 22 chr11 14937465 14937648 -135845905 + MLT1F LTR MaLR 269 450 -92 1432 168 98 7 chr11 14937660 14937896 -135845657 - AluJo SINE Alu -13 299 33 1763 148 31 3 chr11 14937896 14938187 -135845366 + AluSx SINE Alu 1 299 -13 1432 168 98 7 chr11 14938187 14938224 -135845329 - AluJo SINE Alu -279 33 1 1616 106 38 72 chr11 14938271 14938564 -135844989 + AluSx SINE Alu 12 294 -18 247 162 0 0 chr11 14938565 14938602 -135844951 - Alu SINE Alu -271 37 1 835 172 0 6 chr11 14938646 14938790 -135844763 + AluSg/x SINE Alu 142 286 -24 3809 174 56 10 chr11 14938790 14939501 -135844052 + L1MB7 LINE L1 5428 6171 -13 835 172 0 6 chr11 14939501 14939513 -135844040 + AluSg/x SINE Alu 286 297 -13 438 183 201 43 chr11 14939892 14940056 -135843497 - MIR3 SINE MIR -15 193 4 743 276 44 56 chr11 14940216 14940535 -135843018 + MER102b DNA MER1_type 26 340 -1 22 0 0 0 chr11 14940585 14940607 -135842946 + AT_rich Low_complexity Low_complexity 1 22 0 287 264 25 15 chr11 14940616 14940720 -135842833 + MER5A DNA MER1_type 24 138 -51 2332 90 0 7 chr11 14940743 14941043 -135842510 + AluSx SINE Alu 1 298 -14 2367 90 3 0 chr11 14941045 14941345 -135842208 + AluSp SINE Alu 1 301 -12 376 319 37 6 chr11 14941914 14942077 -135841476 - MIR3 SINE MIR -7 201 34 2188 127 0 0 chr11 14942212 14942512 -135841041 - AluSx SINE Alu -12 300 1 375 233 196 0 chr11 14942512 14942645 -135840908 + L1ME4a LINE L1 5699 5857 -264 1461 198 73 40 chr11 14942656 14942783 -135840770 + MLT1A1 LTR MaLR 1 122 -243 3479 60 0 79 chr11 14942783 14943263 -135840290 - MLT2A1 LTR ERVL -2 442 1 1461 198 73 40 chr11 14943263 14943464 -135840089 + MLT1A1 LTR MaLR 122 340 -25 2469 90 3 0 chr11 14943502 14943814 -135839739 + AluSp SINE Alu 1 313 0 353 214 128 132 chr11 14943885 14943951 -135839602 - MIR SINE MIR -12 250 185 2405 94 0 0 chr11 14943951 14944250 -135839303 + AluY SINE Alu 1 299 -12 353 214 128 132 chr11 14944250 14944426 -135839127 - MIR SINE MIR -77 185 9 3373 187 31 5 chr11 14944532 14945174 -135838379 - L1MB5 LINE L1 -154 6020 5362 1281 301 103 38 chr11 14995209 14995316 -135788237 + L2 LINE L2 1988 2087 -1227 1382 201 37 0 chr11 14995316 14995615 -135787938 - L1MA6 LINE L1 0 6300 5991 1281 301 103 38 chr11 14995615 14996292 -135787261 + L2 LINE L2 2087 2823 -491 2298 68 0 17 chr11 14996394 14996688 -135786865 - AluY SINE Alu -22 289 1 35 24 0 0 chr11 14997386 14997428 -135786125 + AT_rich Low_complexity Low_complexity 1 42 0 1917 168 0 3 chr11 14997484 14997782 -135785771 - AluSx SINE Alu -15 297 1 2457 81 0 0 chr11 14997988 14998285 -135785268 + AluSx SINE Alu 1 297 -15 936 117 4 19 chr11 14998332 14998579 -135784974 + AluSx SINE Alu 2 301 -11 885 127 0 15 chr11 14999248 14999382 -135784171 - FLAM_C SINE Alu 0 133 2 3289 60 22 44 chr11 14999494 14999706 -135783847 + MLT2A1 LTR ERVL 1 216 -228 2297 103 0 7 chr11 14999706 15000008 -135783545 + AluSq SINE Alu 1 300 -13 3289 60 22 44 chr11 15000008 15000249 -135783304 + MLT2A1 LTR ERVL 216 444 0 2140 106 7 0 chr11 15000684 15001007 -135782546 + AluSp SINE Alu 1 325 0 200 250 83 0 chr11 15001270 15001342 -135782211 - MIR SINE MIR -71 191 114 395 296 76 22 chr11 15001378 15001601 -135781952 + MIR SINE MIR 25 259 -3 1727 151 4 0 chr11 15002128 15002386 -135781167 - AluJb SINE Alu -9 303 45 274 284 37 18 chr11 15002486 15002595 -135780958 - HAL1 LINE L1 -707 1800 1690 236 339 39 44 chr11 15002587 15002751 -135780802 - HAL1 LINE L1 -573 1934 1770 * 198 0 0 0 chr11 15002751 15002773 -135780780 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 236 339 39 44 chr11 15002773 15002788 -135780765 - HAL1 LINE L1 -737 1770 1756 791 226 65 0 chr11 15002809 15003008 -135780545 - HAL1 LINE L1 -866 1641 1430 1627 149 50 8 chr11 15003008 15003307 -135780246 - AluJo SINE Alu 0 328 19 258 214 0 136 chr11 15003338 15003441 -135780112 - HAL1 LINE L1 -1066 1441 1353 2426 98 0 0 chr11 15003711 15004016 -135779537 - AluSx SINE Alu -7 305 1 236 282 114 30 chr11 15004403 15004534 -135779019 + L2 LINE L2 2611 2752 -562 665 312 18 113 chr11 15004634 15004871 -135778682 + L2 LINE L2 2915 3102 -170 2654 125 18 66 chr11 15004871 15005093 -135778460 + Tigger2a DNA MER2_type 2 192 -2516 2233 129 0 6 chr11 15005093 15005404 -135778149 - AluSx SINE Alu -3 309 1 2654 125 18 66 chr11 15005404 15005636 -135777917 + Tigger2a DNA MER2_type 192 434 0 665 312 18 113 chr11 15005636 15005789 -135777764 + L2 LINE L2 3102 3268 -4 2241 94 13 3 chr11 15006026 15006324 -135777229 - AluSq SINE Alu -12 301 1 207 0 0 0 chr11 15006835 15006858 -135776695 + (A)n Simple_repeat Simple_repeat 1 23 0 303 326 133 39 chr11 15006995 15007455 -135776098 - L2 LINE L2 -2281 1033 531 2352 82 0 7 chr11 15007698 15007991 -135775562 + AluSx SINE Alu 3 293 -19 386 268 146 18 chr11 15008171 15008335 -135775218 + MIR SINE MIR 21 205 -57 231 199 0 15 chr11 15009346 15009410 -135774143 - MIR SINE MIR -65 143 89 218 200 20 0 chr11 15009724 15009774 -135773779 + MIR SINE MIR 73 123 -139 1666 106 160 4 chr11 15009788 15010044 -135773509 + AluSx SINE Alu 1 296 -16 1988 150 7 0 chr11 15010297 15010591 -135772962 + AluSx SINE Alu 2 297 -15 305 282 77 0 chr11 15011054 15011171 -135772382 + L2 LINE L2 3168 3293 -20 454 274 134 26 chr11 15011753 15011961 -135771592 - MIR SINE MIR -30 232 3 407 218 0 0 chr11 15012087 15012165 -135771388 + MER116 DNA Mariner 1 78 -2 1826 125 63 21 chr11 15012461 15012748 -135770805 - AluJo SINE Alu -13 299 1 1601 177 7 45 chr11 15012846 15013156 -135770397 + AluJo SINE Alu 1 298 -14 217 318 59 12 chr11 15013356 15013441 -135770112 + L2 LINE L2 3007 3095 -177 2249 79 3 30 chr11 15014804 15015107 -135768446 - AluSx SINE Alu -17 295 1 279 266 0 51 chr11 15015244 15015323 -135768230 - L2 LINE L2 0 3313 3239 21 36 0 0 chr11 15015368 15015396 -135768157 + AT_rich Low_complexity Low_complexity 1 28 0 378 307 218 14 chr11 15015549 15015842 -135767711 - L2 LINE L2 -688 2626 2274 1491 85 10 10 chr11 15015948 15016147 -135767406 + AluSc SINE Alu 97 295 -14 763 160 24 0 chr11 15016187 15016312 -135767241 - FLAM_C SINE Alu -3 130 3 1330 181 79 29 chr11 15016329 15016606 -135766947 - AluJo SINE Alu -21 291 1 234 0 0 0 chr11 15016658 15016684 -135766869 + (A)n Simple_repeat Simple_repeat 1 26 0 512 231 116 0 chr11 15017291 15017438 -135766115 + MER103 DNA DNA 3 166 0 186 43 0 0 chr11 15017675 15017698 -135765855 + (T)n Simple_repeat Simple_repeat 1 23 0 2470 64 0 0 chr11 15018455 15018751 -135764802 + AluY SINE Alu 1 296 -15 22 35 0 0 chr11 15018946 15018975 -135764578 + AT_rich Low_complexity Low_complexity 1 29 0 22 70 0 0 chr11 15019006 15019049 -135764504 + AT_rich Low_complexity Low_complexity 1 43 0 22 35 0 0 chr11 15019386 15019415 -135764138 + AT_rich Low_complexity Low_complexity 1 29 0 1314 109 0 6 chr11 15019569 15019744 -135763809 - AluSg/x SINE Alu -7 305 132 2326 82 7 20 chr11 15020258 15020562 -135762991 - AluSx SINE Alu -12 300 1 427 177 91 0 chr11 15020602 15020703 -135762850 + L1ME1 LINE L1 6065 6182 -2 200 343 19 19 chr11 15020706 15020811 -135762742 + L2 LINE L2 3126 3230 -83 25 65 0 0 chr11 15020873 15020919 -135762634 + AT_rich Low_complexity Low_complexity 1 46 0 2109 138 0 3 chr11 15021112 15021410 -135762143 - AluSx SINE Alu -14 298 2 1852 138 50 0 chr11 15022015 15022298 -135761255 - AluJb SINE Alu -15 297 1 782 263 52 0 chr11 15022932 15023126 -135760427 - MIR SINE MIR -14 248 45 2140 135 15 9 chr11 15023300 15023640 -135759913 + MER2 DNA MER2_type 2 343 -1 2292 107 0 3 chr11 15023718 15024026 -135759527 - AluSg SINE Alu -3 307 1 413 349 198 31 chr11 15024064 15024803 -135758750 + L2 LINE L2 1397 2011 -1303 2122 129 3 10 chr11 15024803 15025114 -135758439 - AluSx SINE Alu -3 309 1 413 349 198 31 chr11 15025114 15025643 -135757910 + L2 LINE L2 2011 2877 -437 363 331 54 24 chr11 15026143 15026309 -135757244 + L2 LINE L2 3102 3272 0 432 0 0 0 chr11 15026557 15026605 -135756948 + (CA)n Simple_repeat Simple_repeat 2 49 0 1127 168 0 11 chr11 15026833 15027024 -135756529 - AluJo SINE Alu -18 294 106 5118 151 32 12 chr11 15028501 15029562 -135753991 + L1MB3 LINE L1 5099 6183 0 22 35 0 0 chr11 15029564 15029593 -135753960 + AT_rich Low_complexity Low_complexity 1 29 0 1753 179 3 7 chr11 15030484 15030785 -135752768 - AluJo SINE Alu -6 306 7 544 265 236 18 chr11 15031390 15031881 -135751672 - L1MC4 LINE L1 -84 7958 7361 255 175 63 32 chr11 15032075 15032138 -135751415 + L1MEc LINE L1 415 479 -5917 1068 272 70 19 chr11 15032182 15032394 -135751159 + L1MEc LINE L1 1254 1454 -4942 414 0 0 0 chr11 15032394 15032440 -135751113 + (CA)n Simple_repeat Simple_repeat 2 47 0 1068 272 70 19 chr11 15032440 15032745 -135750808 + L1MEc LINE L1 1454 1797 -4599 2212 85 0 14 chr11 15033130 15033425 -135750128 + AluSq SINE Alu 1 291 -22 8888 123 40 19 chr11 15033652 15034461 -135749092 - Tigger1 DNA MER2_type -946 1472 620 2094 108 30 3 chr11 15034461 15034756 -135748797 - AluSg SINE Alu -4 306 4 8888 123 40 19 chr11 15034756 15035389 -135748164 - Tigger1 DNA MER2_type -1798 620 1 358 270 176 0 chr11 15035389 15035535 -135748018 + MER2 DNA MER2_type 174 345 0 182 225 0 0 chr11 15035931 15035971 -135747582 + L2 LINE L2 3271 3310 -3 2330 100 7 0 chr11 15036308 15036618 -135746935 + AluSx SINE Alu 1 312 0 445 242 100 0 chr11 15036744 15036864 -135746689 + MIR SINE MIR 117 248 -14 311 258 57 6 chr11 15037586 15037696 -135745857 + MIR SINE MIR 2 143 -65 408 335 21 53 chr11 15037946 15038134 -135745419 - MIR3 SINE MIR -17 191 10 186 43 0 0 chr11 15038254 15038277 -135745276 + (T)n Simple_repeat Simple_repeat 1 23 0 807 61 35 0 chr11 15038612 15038726 -135744827 + AluY SINE Alu 16 133 -178 397 119 17 0 chr11 15038924 15038983 -135744570 + U7 snRNA snRNA 2 61 -2 216 0 0 0 chr11 15038989 15039013 -135744540 + (A)n Simple_repeat Simple_repeat 1 24 0 1582 189 10 17 chr11 15039834 15040135 -135743418 - AluJo SINE Alu -13 299 1 21 71 0 0 chr11 15040730 15040772 -135742781 + AT_rich Low_complexity Low_complexity 1 42 0 298 275 91 42 chr11 15041345 15041629 -135741924 + L1MC4a LINE L1 7315 7636 -172 725 219 269 12 chr11 15041733 15041825 -135741728 - L1MC4 LINE L1 -11 8031 7964 2085 124 3 13 chr11 15041825 15042123 -135741430 - AluSx SINE Alu -17 295 1 725 219 269 12 chr11 15042123 15042350 -135741203 - L1MC4 LINE L1 -78 7964 7630 2365 85 0 3 chr11 15042572 15042867 -135740686 - AluSx SINE Alu -18 294 1 284 0 28 0 chr11 15043255 15043291 -135740262 + (CA)n Simple_repeat Simple_repeat 1 37 0 22 56 0 0 chr11 15043633 15043669 -135739884 + AT_rich Low_complexity Low_complexity 1 36 0 3064 189 71 46 chr11 15043699 15044472 -135739081 + L1MC4a LINE L1 6947 7744 -64 2233 113 0 3 chr11 15044472 15044774 -135738779 + AluSc SINE Alu 4 304 -5 3064 189 71 46 chr11 15044774 15044841 -135738712 + L1MC4a LINE L1 7744 7808 0 1219 163 69 105 chr11 15045046 15045352 -135738201 - AluJo SINE Alu -6 296 2 691 195 0 0 chr11 15045375 15045498 -135738055 - FLAM_C SINE Alu -20 123 1 1977 111 52 85 chr11 15045501 15045596 -135737957 - Tigger2a DNA MER2_type -2334 374 277 2034 123 17 3 chr11 15045596 15045888 -135737665 + AluSx SINE Alu 1 296 -16 1977 111 52 85 chr11 15045888 15046179 -135737374 - Tigger2a DNA MER2_type -2431 277 1 2248 114 3 0 chr11 15047426 15047734 -135735819 + AluSg SINE Alu 1 309 -1 25 31 0 0 chr11 15048403 15048435 -135735118 + AT_rich Low_complexity Low_complexity 1 32 0 3970 166 22 9 chr11 15049187 15049928 -135733625 + L1MB3 LINE L1 5427 6176 -7 23 0 0 0 chr11 15050328 15050351 -135733202 + AT_rich Low_complexity Low_complexity 1 23 0 2140 117 3 3 chr11 15050818 15051117 -135732436 - AluSg SINE Alu -9 301 3 954 115 8 0 chr11 15051120 15051250 -135732303 - AluSc SINE Alu -54 255 125 2253 117 0 0 chr11 15051492 15051800 -135731753 + AluSq SINE Alu 1 308 -5 483 272 10 77 chr11 15051932 15052127 -135731426 - MER102a DNA MER1_type -9 321 140 284 277 121 15 chr11 15053170 15053325 -135730228 + MIR3 SINE MIR 2 176 -32 328 256 0 12 chr11 15053993 15054075 -135729478 + L3 LINE CR1 1317 1397 -180 1009 113 0 0 chr11 15054157 15054290 -135729263 - AluSq/x SINE Alu -177 135 3 24 0 0 0 chr11 15054879 15054903 -135728650 + AT_rich Low_complexity Low_complexity 1 24 0 6871 119 30 7 chr11 15054963 15056945 -135726608 + L1MA2 LINE L1 4277 6303 -1 301 221 92 107 chr11 15058169 15058300 -135725253 + L1MDb LINE L1 597 725 -5684 1941 163 128 5 chr11 15059510 15059940 -135723613 - L1MD2 LINE L1 -62 6297 5815 1918 143 14 7 chr11 15060593 15060886 -135722667 - AluJo SINE Alu -17 295 1 2262 80 0 14 chr11 15061301 15061587 -135721966 - AluSx SINE Alu -19 293 12 339 25 0 0 chr11 15061765 15061805 -135721748 + (TG)n Simple_repeat Simple_repeat 1 40 0 187 246 88 0 chr11 15062144 15062201 -135721352 - MIR SINE MIR -93 115 54 2285 48 65 3 chr11 15062301 15062594 -135720959 - AluY SINE Alu 0 311 1 26 0 0 0 chr11 15062604 15062630 -135720923 + AT_rich Low_complexity Low_complexity 1 26 0 2351 89 0 7 chr11 15062630 15062923 -135720630 - AluSp SINE Alu -22 291 1 21 0 0 0 chr11 15064032 15064053 -135719500 + AT_rich Low_complexity Low_complexity 1 21 0 316 183 33 0 chr11 15064053 15064113 -135719440 + Tigger2 DNA MER2_type 1 62 -2656 525 98 20 29 chr11 15064201 15064303 -135719250 + Tigger2 DNA MER2_type 110 210 -2508 1721 182 0 19 chr11 15064303 15064611 -135718942 + AluJo SINE Alu 1 302 -10 767 188 40 0 chr11 15064621 15064770 -135718783 + Tigger2 DNA MER2_type 2554 2708 -10 642 236 58 116 chr11 15065273 15065722 -135717831 + MLT1H LTR MaLR 120 542 -7 2356 76 3 3 chr11 15065743 15066046 -135717507 - AluSc SINE Alu -6 303 1 2011 244 156 101 chr11 15066682 15068074 -135715479 + L2 LINE L2 1201 2669 -645 313 102 0 0 chr11 15068075 15068124 -135715429 - AluSx SINE Alu -6 294 246 1197 121 0 0 chr11 15068124 15068281 -135715272 - AluSx SINE Alu -155 157 1 2555 45 0 29 chr11 15068294 15068603 -135714950 - AluY SINE Alu -11 300 1 1067 280 149 23 chr11 15068604 15069198 -135714355 + L2 LINE L2 2664 3311 -2 2615 226 118 11 chr11 15069879 15069965 -135713588 + L1M4 LINE L1 3626 3701 -2445 225 0 0 0 chr11 15069965 15069990 -135713563 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 2615 226 118 11 chr11 15069990 15070673 -135712880 + L1M4 LINE L1 3701 4501 -1645 2361 90 3 0 chr11 15070673 15070974 -135712579 + AluSp SINE Alu 1 302 -11 2615 226 118 11 chr11 15070974 15071078 -135712475 + L1M4 LINE L1 4501 4593 -1553 705 273 125 29 chr11 15071099 15071410 -135712143 + MER68 LTR ERV1 215 555 -7 197 325 36 24 chr11 15071872 15071955 -135711598 + MER5A DNA MER1_type 76 159 -30 21 0 0 0 chr11 15072022 15072043 -135711510 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr11 15072113 15072133 -135711420 + (A)n Simple_repeat Simple_repeat 1 20 0 23 54 0 0 chr11 15072328 15072365 -135711188 + AT_rich Low_complexity Low_complexity 1 37 0 900 180 29 15 chr11 15073822 15074028 -135709525 + MER33 DNA MER1_type 6 214 -110 1771 87 0 0 chr11 15074133 15074352 -135709201 - AluSq SINE Alu -12 301 83 21 0 0 0 chr11 15074530 15074551 -135709002 + AT_rich Low_complexity Low_complexity 1 21 0 2367 88 7 0 chr11 15074551 15074846 -135708707 + AluSx SINE Alu 1 297 -15 182 330 36 62 chr11 15075090 15075202 -135708351 + L2 LINE L2 3200 3308 -5 1796 164 10 3 chr11 15076013 15076306 -135707247 - AluJo SINE Alu -17 295 1 1244 214 55 48 chr11 15076332 15076753 -135706800 - L1MA9 LINE L1 -39 6273 5850 242 301 43 11 chr11 15077650 15077743 -135705810 + MIR3 SINE MIR 85 180 -28 289 23 186 0 chr11 15078753 15078796 -135704757 + MADE1 DNA Mariner 3 53 -27 249 313 152 27 chr11 15078867 15078979 -135704574 + L2 LINE L2 3127 3252 -20 1419 175 45 34 chr11 15079083 15079206 -135704347 + AluJb SINE Alu 1 121 -191 210 105 0 0 chr11 15079206 15079244 -135704309 + (TAA)n Simple_repeat Simple_repeat 2 39 0 1419 175 45 34 chr11 15079244 15079412 -135704141 + AluJb SINE Alu 121 295 -17 2224 59 63 0 chr11 15079412 15079697 -135703856 + AluSg SINE Alu 1 304 -6 375 219 63 0 chr11 15079698 15079807 -135703746 - L1ME LINE L1 -539 5583 5470 291 284 25 0 chr11 15079851 15079932 -135703621 + L2 LINE L2 3231 3313 0 756 269 73 42 chr11 15080118 15080661 -135702892 - L1ME4a LINE L1 -296 5825 5259 451 225 0 0 chr11 15080823 15080903 -135702650 + L2 LINE L2 3234 3313 0 1918 164 0 3 chr11 15081186 15081479 -135702074 - AluJo SINE Alu -20 292 1 1960 140 27 0 chr11 15081499 15081791 -135701762 - AluJo SINE Alu -12 300 1 614 188 30 38 chr11 15081902 15082035 -135701518 + AluJo SINE Alu 2 133 -169 189 171 0 0 chr11 15082050 15082085 -135701468 + GA-rich Low_complexity Low_complexity 4 38 0 502 188 0 0 chr11 15082089 15082169 -135701384 + AluJo SINE Alu 130 209 -103 1237 176 113 74 chr11 15082169 15082602 -135700951 + LTR7 LTR ERV1 1 450 0 651 161 35 7 chr11 15082602 15082745 -135700808 + HERVH LTR ERV1 1 147 -7566 * 12933 104 13 8 chr11 15082742 15084781 -135698772 + HERVH LTR ERV1 1945 3993 -3720 5666 122 5 4 chr11 15084764 15085686 -135697867 + HERVH LTR ERV1 3995 5287 -1804 * 264 29 0 0 chr11 15085685 15085719 -135697834 + HERVH LTR ERV1 4882 4915 -2798 * 1395 173 8 0 chr11 15085716 15085982 -135697571 + HERVH LTR ERV1 5749 6016 -1697 * 3248 114 14 23 chr11 15085975 15086537 -135697016 + HERVH LTR ERV1 7157 7713 0 1158 178 113 76 chr11 15086538 15086971 -135696582 + LTR7 LTR ERV1 2 450 0 434 89 241 0 chr11 15086971 15087050 -135696503 + AluJo SINE Alu 205 302 -10 497 176 40 101 chr11 15087855 15088003 -135695550 + L2 LINE L2 3175 3313 0 2318 110 0 0 chr11 15088530 15088829 -135694724 + AluSg SINE Alu 1 299 -11 2139 145 47 0 chr11 15089043 15089365 -135694188 - L1PA16 LINE L1 0 6166 5824 1853 175 10 0 chr11 15089365 15089668 -135693885 - AluJb SINE Alu -6 306 1 2139 145 47 0 chr11 15089668 15089704 -135693849 - L1PA16 LINE L1 -342 5824 5791 539 294 25 12 chr11 15089712 15089875 -135693678 + LTR33 LTR ERVL 80 244 -277 35 24 0 0 chr11 15090404 15090446 -135693107 + AT_rich Low_complexity Low_complexity 1 42 0 2178 131 0 0 chr11 15090502 15090799 -135692754 - AluSx SINE Alu -15 297 1 23 0 0 0 chr11 15090869 15090892 -135692661 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr11 15092098 15092121 -135691432 + AT_rich Low_complexity Low_complexity 1 23 0 2523 55 0 13 chr11 15092354 15092665 -135690888 + AluY SINE Alu 1 307 -4 1659 47 0 19 chr11 15093683 15093896 -135689657 + L1PA5 LINE L1 5946 6154 0 269 275 50 12 chr11 15095467 15095547 -135688006 - MIR3 SINE MIR -22 186 104 438 211 0 70 chr11 15095569 15095646 -135687907 - Charlie4a DNA MER1_type -1453 508 440 1771 131 91 0 chr11 15095646 15095921 -135687632 - AluSx SINE Alu -12 300 1 438 211 0 70 chr11 15095921 15095957 -135687596 - Charlie4a DNA MER1_type -1521 440 403 696 218 0 0 chr11 15096007 15096131 -135687422 + FLAM_A SINE Alu 1 124 -9 622 153 15 23 chr11 15096178 15096309 -135687244 - L1MB7 LINE L1 -1 6183 6054 453 132 28 66 chr11 15096442 15096470 -135687083 - L1MB8 LINE L1 -6 6172 6144 1062 181 34 10 chr11 15096470 15096675 -135686878 + MER6B DNA MER2_type 1 210 0 453 132 28 66 chr11 15096675 15096752 -135686801 - L1MB8 LINE L1 -34 6144 6071 2928 157 21 28 chr11 15096753 15096836 -135686717 + L1MB7 LINE L1 5078 5160 -1024 1846 139 35 14 chr11 15096836 15097124 -135686429 - AluJb SINE Alu -18 294 1 2928 157 21 28 chr11 15097124 15097804 -135685749 + L1MB7 LINE L1 5160 5833 -351 499 206 131 6 chr11 15097817 15097977 -135685576 + L1MB7 LINE L1 5995 6174 -10 1237 134 21 198 chr11 15097981 15098102 -135685451 - Charlie4a DNA MER1_type -1545 416 275 2414 91 26 3 chr11 15098102 15098444 -135685109 - L1PA10 LINE L1 -5 6163 5814 1237 134 21 198 chr11 15098444 15098808 -135684745 - Charlie4a DNA MER1_type -1686 275 17 216 269 19 0 chr11 15098849 15098901 -135684652 - MIR SINE MIR -125 83 31 222 219 0 0 chr11 15098914 15098955 -135684598 + CT-rich Low_complexity Low_complexity 3 43 0 2071 129 0 0 chr11 15099247 15099526 -135684027 - AluSg SINE Alu -31 279 1 21 0 0 0 chr11 15099879 15099900 -135683653 + AT_rich Low_complexity Low_complexity 1 21 0 212 0 36 0 chr11 15100808 15100836 -135682717 + (CA)n Simple_repeat Simple_repeat 2 30 0 207 275 147 0 chr11 15100871 15100980 -135682573 - MIR SINE MIR 0 262 138 350 281 34 0 chr11 15101061 15101150 -135682403 - MIR SINE MIR -145 117 26 359 281 8 31 chr11 15101169 15101297 -135682256 + (TATATG)n Simple_repeat Simple_repeat 3 127 0 654 248 0 14 chr11 15101298 15101443 -135682110 - MER63A DNA MER1_type -23 187 45 2493 74 0 0 chr11 15102210 15102509 -135681044 + AluY SINE Alu 1 299 -12 29 0 0 0 chr11 15103548 15103577 -135679976 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr11 15104677 15104700 -135678853 + AT_rich Low_complexity Low_complexity 1 23 0 1913 158 7 10 chr11 15105611 15105915 -135677638 - AluJo SINE Alu -9 303 1 5116 190 53 21 chr11 15105947 15107502 -135676051 - L1MD2 LINE L1 -12 6347 4747 562 185 141 0 chr11 15107546 15107681 -135675872 - MIR SINE MIR -13 249 96 2285 224 138 51 chr11 15108266 15109363 -135674190 - HAL1 LINE L1 -13 2494 1303 655 224 29 0 chr11 15109458 15109628 -135673925 - L1M4 LINE L1 -1107 5039 4865 1424 186 29 25 chr11 15109650 15109925 -135673628 - AluJo SINE Alu -36 276 1 317 216 278 12 chr11 15109928 15110012 -135673541 - HAL1 LINE L1 -1258 1249 1189 2417 72 0 34 chr11 15110012 15110332 -135673221 - AluSc SINE Alu 0 309 1 317 216 278 12 chr11 15110332 15110409 -135673144 - HAL1 LINE L1 -1318 1189 1045 635 311 108 10 chr11 15110425 15110730 -135672823 - HAL1 LINE L1 -1917 590 256 1511 193 10 26 chr11 15110926 15111237 -135672316 + AluJo SINE Alu 6 311 -1 237 209 0 0 chr11 15111929 15111972 -135671581 + GA-rich Low_complexity Low_complexity 2 44 0 1177 264 107 22 chr11 15112585 15112986 -135670567 - LTR16A LTR ERVL 0 450 16 307 291 70 45 chr11 15113008 15113207 -135670346 - HERV16 LTR ERVL -6 4990 4787 574 357 13 37 chr11 15113343 15113643 -135669910 - HERV16 LTR ERVL -790 4864 4572 225 290 50 55 chr11 15113685 15113885 -135669668 + L1ME4a LINE L1 5919 6117 -4 704 22 33 0 chr11 15114579 15114671 -135668882 + (CTAAA)n Simple_repeat Simple_repeat 1 95 0 738 231 48 11 chr11 15114696 15114882 -135668671 - LTR33A LTR ERVL 0 523 331 310 334 48 57 chr11 15115310 15115419 -135668134 - L1M4 LINE L1 -1380 4766 4657 1362 107 226 8 chr11 15115419 15115662 -135667891 - AluJb SINE Alu -16 296 1 310 334 48 57 chr11 15115662 15115866 -135667687 - L1M4 LINE L1 -1489 4657 4456 276 270 190 15 chr11 15116272 15116409 -135667144 + L3 LINE CR1 1380 1540 -37 376 238 76 70 chr11 15116422 15116607 -135666946 - L1ME4a LINE L1 -1 6120 5935 4227 165 48 10 chr11 15116762 15117536 -135666017 - L1MD1 LINE L1 -1 6241 5439 1826 154 26 22 chr11 15117558 15117869 -135665684 - AluJb SINE Alu 0 312 1 1485 234 46 7 chr11 15117869 15118323 -135665230 - L1M4 LINE L1 -2678 3468 2997 1631 245 90 51 chr11 15118392 15119232 -135664321 - L2 LINE L2 -4 3309 2456 246 200 36 0 chr11 15119713 15119768 -135663785 - MLT1K LTR MaLR -530 58 2 3504 181 42 14 chr11 15120322 15120957 -135662596 - MER82 DNA MER2_type 0 653 1 536 344 32 0 chr11 15121215 15121404 -135662149 - MER117 DNA MER1_type -2 195 1 2116 129 114 9 chr11 15121686 15122027 -135661526 - THE1-int LTR MaLR -843 737 361 31945 82 9 6 chr11 15122029 15123852 -135659701 + L1P LINE L1 1 1816 -4330 2059 107 0 4 chr11 15123852 15124153 -135659400 - AluY SINE Alu 0 300 1 31945 82 9 6 chr11 15124153 15126608 -135656945 + L1P LINE L1 1816 4294 -1852 3800 184 70 0 chr11 15126608 15127289 -135656264 + MST-int LTR MaLR 233 961 -690 2627 115 30 3 chr11 15127289 15127654 -135655899 + THE1C LTR MaLR 1 375 0 2598 102 13 5 chr11 15127654 15128026 -135655527 + THE1C-int LTR MaLR 1 375 -1205 21 0 0 0 chr11 15128026 15128047 -135655506 + AT_rich Low_complexity Low_complexity 1 21 0 9113 49 1 20 chr11 15128056 15129945 -135653608 - L1PA5 LINE L1 -6 6148 4282 669 226 4 128 chr11 15129945 15130192 -135653361 - MIR SINE MIR -34 228 12 386 264 32 19 chr11 15130193 15130348 -135653205 + L2 LINE L2 737 893 -2421 957 249 19 5 chr11 15130400 15130605 -135652948 - MIR SINE MIR -48 214 7 2052 60 8 4 chr11 15130773 15131024 -135652529 + L1PA7 LINE L1 5902 6153 -1 181 233 256 22 chr11 15131739 15131829 -135651724 - MIR SINE MIR -66 196 86 1269 220 157 67 chr11 15131932 15132378 -135651175 - MLT1D LTR MaLR -19 486 1 489 335 85 46 chr11 15132867 15133440 -135650113 + L2 LINE L2 2675 3271 -1 512 216 0 61 chr11 15134166 15134314 -135649239 + MIR SINE MIR 83 221 -41 982 281 65 42 chr11 15134419 15134803 -135648750 - MLT1K LTR MaLR 0 588 196 534 193 82 7 chr11 15134893 15135028 -135648525 - MER69 DNA AcHobo -1 2525 2381 365 187 120 13 chr11 15135154 15135229 -135648324 - MER69 DNA AcHobo -115 62 1 197 33 33 0 chr11 15135242 15135272 -135648281 + (CAA)n Simple_repeat Simple_repeat 1 31 0 2109 117 3 41 chr11 15135305 15135621 -135647932 - AluSx SINE Alu -8 304 1 225 221 21 11 chr11 15135945 15136040 -135647513 + CT-rich Low_complexity Low_complexity 1 96 0 258 56 0 0 chr11 15137282 15137318 -135646235 + (T)n Simple_repeat Simple_repeat 1 36 0 235 245 0 19 chr11 15138551 15138604 -135644949 + MER5B DNA MER1_type 1 52 -126 318 161 0 36 chr11 15138608 15138664 -135644889 + MER31A LTR ERV1 350 403 -82 239 288 12 25 chr11 15138670 15138750 -135644803 + MER5B DNA MER1_type 50 128 -50 2194 124 0 0 chr11 15138940 15139238 -135644315 + AluSx SINE Alu 1 298 -14 1864 127 0 4 chr11 15139545 15139812 -135643741 - AluSc SINE Alu -5 304 39 754 266 109 46 chr11 15139926 15140385 -135643168 + LTR33A LTR ERVL 12 499 -24 437 263 225 10 chr11 15140425 15140634 -135642919 + MIR SINE MIR 9 262 0 273 323 48 118 chr11 15140730 15141086 -135642467 - L2 LINE L2 -1 3271 2941 652 302 31 36 chr11 15141491 15141713 -135641840 + L2 LINE L2 2744 2964 -350 924 247 96 53 chr11 15141742 15142119 -135641434 + L2 LINE L2 2824 3216 -97 587 207 7 0 chr11 15142119 15142254 -135641299 + (TA)n Simple_repeat Simple_repeat 2 137 0 1323 166 67 107 chr11 15142261 15142634 -135640919 - LTR47B LTR ERVL -85 358 1 2549 147 40 7 chr11 15142708 15143158 -135640395 + L1MB3 LINE L1 5717 6181 -2 314 288 96 35 chr11 15143211 15143409 -135640144 - L2 LINE L2 -1268 2046 1837 3849 138 82 87 chr11 15143677 15145061 -135638492 + pTR5 LTR ERV1 66 2438 0 207 0 0 0 chr11 15145145 15145168 -135638385 + (TC)n Simple_repeat Simple_repeat 2 24 0 2315 83 0 0 chr11 15145185 15145475 -135638078 - AluY SINE Alu -21 290 1 418 260 0 19 chr11 15145475 15145579 -135637974 + L2 LINE L2 3210 3311 -2 581 240 52 70 chr11 15145605 15145834 -135637719 + L2 LINE L2 3000 3224 -89 506 302 111 5 chr11 15145858 15146047 -135637506 - MIR SINE MIR -31 231 23 441 0 0 0 chr11 15146404 15146453 -135637100 + (GA)n Simple_repeat Simple_repeat 1 49 0 227 239 14 42 chr11 15146593 15146664 -135636889 + MLT1L LTR MaLR 5 73 -542 416 219 34 50 chr11 15146715 15146834 -135636719 + MLT1L LTR MaLR 174 290 -325 353 67 0 0 chr11 15147046 15147091 -135636462 + (GA)n Simple_repeat Simple_repeat 1 45 0 244 225 14 42 chr11 15147231 15147302 -135636251 + MLT1L LTR MaLR 5 73 -542 436 204 15 88 chr11 15147353 15147490 -135636063 + MLT1L LTR MaLR 174 300 -315 629 225 127 6 chr11 15147515 15147688 -135635865 + MLT1L LTR MaLR 422 615 0 38916 81 13 7 chr11 15148188 15154301 -135629252 - L1PA6 LINE L1 -1 6153 11 334 327 10 10 chr11 15155164 15155265 -135628288 - MIR SINE MIR -155 107 7 550 240 53 0 chr11 15157069 15157219 -135626334 + Tigger8 DNA MER2_type 335 492 -174 1759 118 0 8 chr11 15157551 15157788 -135625765 - AluSx SINE Alu -77 235 1 5313 158 27 36 chr11 15157994 15158815 -135624738 - L1PA16 LINE L1 -5 6161 5345 1975 153 0 10 chr11 15158815 15159115 -135624438 - AluJo SINE Alu -15 297 1 5313 158 27 36 chr11 15159115 15159730 -135623823 - L1PA16 LINE L1 -821 5345 4726 774 167 0 8 chr11 15159749 15159875 -135623678 + AluJb SINE Alu 188 312 0 1551 258 98 7 chr11 15160995 15161413 -135622140 - LTR16B LTR ERVL 0 464 9 1629 170 18 7 chr11 15161501 15161777 -135621776 + AluJo SINE Alu 4 282 -30 21 0 0 0 chr11 15161777 15161798 -135621755 + AT_rich Low_complexity Low_complexity 1 21 0 1716 50 0 0 chr11 15161798 15162000 -135621553 + L1PA4 LINE L1 5951 6152 -3 320 238 43 6 chr11 15162024 15162188 -135621365 + (TA)n Simple_repeat Simple_repeat 1 170 0 31 58 0 0 chr11 15162145 15162197 -135621356 + AT_rich Low_complexity Low_complexity 1 52 0 * 1357 239 118 28 chr11 15162744 15163473 -135620080 - L2 LINE L2 0 3313 2511 191 339 0 0 chr11 15164781 15164843 -135618710 + MIR SINE MIR 200 261 -1 185 234 16 0 chr11 15165166 15165230 -135618323 + CT-rich Low_complexity Low_complexity 4 68 0 21 36 0 0 chr11 15165703 15165731 -135617822 + AT_rich Low_complexity Low_complexity 1 28 0 27 0 0 0 chr11 15166079 15166106 -135617447 + AT_rich Low_complexity Low_complexity 1 27 0 1969 96 3 96 chr11 15166651 15166974 -135616579 - AluSx SINE Alu -19 293 1 185 258 32 32 chr11 15167381 15167443 -135616110 - L2 LINE L2 0 3313 3252 945 362 43 19 chr11 15167861 15168663 -135614890 + L2 LINE L2 2241 3062 -210 1300 270 130 4 chr11 15168685 15169148 -135614405 + LTR33 LTR ERVL 1 521 0 2027 135 10 3 chr11 15169653 15169950 -135613603 - AluSx SINE Alu -10 302 4 1062 239 39 16 chr11 15170052 15170307 -135613246 - MIR SINE MIR 0 262 2 290 348 126 7 chr11 15170796 15170931 -135612622 + L2 LINE L2 3122 3272 0 270 231 0 0 chr11 15171084 15171149 -135612404 + (TATATG)n Simple_repeat Simple_repeat 1 65 0 284 303 67 0 chr11 15171304 15171393 -135612160 + MIR SINE MIR 8 102 -160 208 359 76 0 chr11 15172430 15172522 -135611031 - L2 LINE L2 -2 3270 3172 1607 188 35 0 chr11 15172588 15172870 -135610683 + AluJb SINE Alu 1 292 -20 312 91 0 0 chr11 15173477 15173521 -135610032 + (TG)n Simple_repeat Simple_repeat 2 45 0 186 43 0 0 chr11 15174693 15174716 -135608837 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 1518 125 96 48 chr11 15174720 15174992 -135608561 - AluJo SINE Alu -27 285 1 498 174 33 0 chr11 15175300 15175392 -135608161 - MIR SINE MIR -10 252 158 1821 310 26 5 chr11 15175555 15176132 -135607421 + HERV16 LTR ERVL 2433 3021 -1975 469 333 17 8 chr11 15176315 15176552 -135607001 - L1ME3 LINE L1 -1 6161 5923 1029 230 20 17 chr11 15176629 15176925 -135606628 - L1ME3 LINE L1 -263 5899 5603 2507 98 33 0 chr11 15176941 15177309 -135606244 - L1PA10 LINE L1 -5 6163 5784 14178 50 3 5 chr11 15177409 15179274 -135604279 - L1P LINE L1 -4284 1862 2 3535 32 2 0 chr11 15179280 15179720 -135603833 - L1PA10 LINE L1 -373 5782 5342 181 244 0 24 chr11 15179720 15179761 -135603792 - L2 LINE L2 -81 3232 3193 574 174 0 0 chr11 15179986 15180084 -135603469 + AluJ/FLAM SINE Alu 1 98 -214 27241 32 10 3 chr11 15180233 15184519 -135599034 + L1PA3 LINE L1 1841 6155 0 2980 46 0 0 chr11 15184537 15184933 -135598620 + L1PA4 LINE L1 5770 6165 0 279 203 257 0 chr11 15184940 15185014 -135598539 + L2 LINE L2 3221 3313 0 963 267 92 49 chr11 15186035 15186525 -135597028 - LTR33 LTR ERVL 0 521 11 1950 67 11 11 chr11 15186538 15186806 -135596747 - L1PA5 LINE L1 -6 6148 5881 650 283 102 13 chr11 15187220 15187446 -135596107 + MIR SINE MIR 17 262 0 635 322 75 33 chr11 15187459 15187791 -135595762 + L3 LINE CR1 1232 1577 0 643 240 16 0 chr11 15187947 15188076 -135595477 - FLAM_A SINE Alu -2 131 1 565 231 41 112 chr11 15188078 15188346 -135595207 - L2 LINE L2 -8 3305 3057 217 233 0 0 chr11 15188478 15188521 -135595032 + L2 LINE L2 2247 2289 -1025 * 228 252 0 107 chr11 15188520 15188623 -135594930 - L2 LINE L2 0 3313 3222 1822 313 84 45 chr11 15188632 15189962 -135593591 + HERV16 LTR ERVL 3135 4314 -682 308 270 24 56 chr11 15190030 15190156 -135593397 - HERV16 LTR ERVL -1644 3352 3231 767 275 33 69 chr11 15190197 15190905 -135592648 + HERV16 LTR ERVL 4505 4996 0 2179 131 3 0 chr11 15190935 15191226 -135592327 + AluSq SINE Alu 3 294 -19 1629 258 42 7 chr11 15191228 15191658 -135591895 + LTR16B LTR ERVL 20 464 0 233 280 144 51 chr11 15192327 15192445 -135591108 + MIR3 SINE MIR 10 138 -70 1758 169 55 39 chr11 15192622 15193006 -135590547 - MLT1B LTR MaLR 0 390 1 550 292 16 65 chr11 15193073 15193258 -135590295 + MER5A DNA MER1_type 14 189 0 540 231 91 91 chr11 15193268 15193510 -135590043 + MIR SINE MIR 20 261 -1 1518 129 64 0 chr11 15193700 15193933 -135589620 + MER1B DNA MER1_type 1 248 -91 11674 27 4 0 chr11 15193933 15196089 -135587464 - L1PA2 LINE L1 0 6155 3995 25791 42 47 2 chr11 15196189 15199628 -135583925 - L1PA2 LINE L1 -2548 3598 7 605 91 101 0 chr11 15199628 15199727 -135583826 + MER1B DNA MER1_type 231 339 0 828 154 8 0 chr11 15199988 15200111 -135583442 - AluJb SINE Alu -188 124 1 1120 352 99 38 chr11 15201646 15202982 -135580571 + L2 LINE L2 1825 3254 -18 515 239 120 25 chr11 15203458 15203679 -135579874 - MIR SINE MIR 0 262 25 4576 89 33 34 chr11 15204086 15205036 -135578517 - MER11A LTR ERVK -167 1069 1 2335 123 0 0 chr11 15205189 15205498 -135578055 - AluSx SINE Alu -3 309 1 26 30 0 0 chr11 15205904 15205937 -135577616 + AT_rich Low_complexity Low_complexity 1 33 0 2351 100 0 0 chr11 15206446 15206755 -135576798 - AluY SINE Alu -2 309 1 23 33 0 0 chr11 15206759 15206789 -135576764 + AT_rich Low_complexity Low_complexity 1 30 0 24 32 0 0 chr11 15207787 15207818 -135575735 + AT_rich Low_complexity Low_complexity 1 31 0 752 132 8 0 chr11 15207818 15207947 -135575606 + (TC)n Simple_repeat Simple_repeat 1 130 0 2017 127 10 0 chr11 15208506 15208806 -135574747 - AluSx SINE Alu 0 312 10 239 284 9 55 chr11 15209028 15209137 -135574416 - L2 LINE L2 -992 2322 2219 1796 235 127 6 chr11 15209477 15209980 -135573573 + MER69 DNA AcHobo 5 568 -658 1012 175 180 43 chr11 15209978 15210423 -135573130 + MER69 DNA AcHobo 2010 2515 -11 * 879 232 73 31 chr11 15211308 15211567 -135571986 - L2 LINE L2 -1 3312 3043 1915 153 0 20 chr11 15211728 15212022 -135571531 + AluJo SINE Alu 1 288 -24 241 191 0 0 chr11 15212033 15212080 -135571473 + MIR SINE MIR 146 192 -70 13237 120 29 12 chr11 15212156 15214506 -135569047 + Tigger1 DNA MER2_type 31 2418 0 343 328 88 97 chr11 15215714 15216065 -135567488 + L2 LINE L2 2925 3272 0 241 353 27 60 chr11 15216400 15216550 -135567003 + L2 LINE L2 3119 3263 -9 838 163 6 30 chr11 15217010 15217176 -135566377 + L1PA6 LINE L1 5993 6154 0 283 404 26 26 chr11 15217847 15218040 -135565513 - MIR3 SINE MIR -9 199 7 213 121 0 0 chr11 15218072 15218105 -135565448 + (CA)n Simple_repeat Simple_repeat 1 33 0 338 284 113 105 chr11 15219504 15220026 -135563527 - L1M2 LINE L1 -5506 1343 818 360 296 177 15 chr11 15221849 15222052 -135561501 - MIR SINE MIR -15 247 12 190 130 19 37 chr11 15222193 15222247 -135561306 + CT-rich Low_complexity Low_complexity 3 55 0 275 361 46 0 chr11 15223283 15223391 -135560162 + MIR3 SINE MIR 79 191 -17 21 57 0 0 chr11 15223821 15223856 -135559697 + AT_rich Low_complexity Low_complexity 1 35 0 233 346 23 30 chr11 15224571 15224704 -135558849 + L2 LINE L2 2685 2816 -498 378 275 56 79 chr11 15225281 15225459 -135558094 - MIR3 SINE MIR -5 203 30 1439 165 4 23 chr11 15226165 15226426 -135557127 - AluJb SINE Alu -12 300 45 768 162 147 35 chr11 15226426 15226623 -135556930 + MLT1D LTR MaLR 27 245 -260 487 31 0 0 chr11 15226645 15226709 -135556844 + AluYa5/8 SINE Alu 171 234 -76 1142 213 29 23 chr11 15226710 15226962 -135556591 + MLT1D LTR MaLR 251 630 -24 2152 146 88 52 chr11 15226962 15227407 -135556146 - MLT1C LTR MaLR -2 465 5 1142 213 29 23 chr11 15227407 15227429 -135556124 + MLT1D LTR MaLR 630 650 -4 386 283 5 91 chr11 15227444 15227631 -135555922 - L1M4 LINE L1 -604 5580 5410 593 260 52 24 chr11 15227637 15227887 -135555666 - L1M4 LINE L1 -1161 4985 4729 1078 186 20 69 chr11 15227892 15228198 -135555355 - L1M4 LINE L1 -957 5189 4899 2536 197 25 39 chr11 15228331 15228606 -135554947 - L1M4 LINE L1 -1272 4874 4597 1502 141 70 0 chr11 15228606 15228890 -135554663 - L1MB2 LINE L1 -2 6169 5866 2536 197 25 39 chr11 15228890 15229263 -135554290 - L1M4 LINE L1 -1549 4597 4235 260 319 125 43 chr11 15229283 15229515 -135554038 + L1MEd LINE L1 510 760 -5359 990 93 0 0 chr11 15229527 15229667 -135553886 + AluY SINE Alu 172 311 0 1779 170 7 3 chr11 15229789 15230078 -135553475 + AluJb SINE Alu 1 290 -22 482 289 49 40 chr11 15230117 15230594 -135552959 + L1MEd LINE L1 1078 1601 -4709 405 0 0 0 chr11 15230860 15230905 -135552648 + (CA)n Simple_repeat Simple_repeat 2 46 0 238 250 108 0 chr11 15231207 15231327 -135552226 + L1MEd LINE L1 2318 2450 -3679 180 176 0 0 chr11 15231341 15231375 -135552178 + (CATATA)n Simple_repeat Simple_repeat 3 36 0 194 352 157 0 chr11 15231506 15231614 -135551939 - L2 LINE L2 -20 3252 3128 193 341 73 16 chr11 15232130 15232253 -135551300 - L2 LINE L2 -829 2485 2356 749 238 48 61 chr11 15232547 15232778 -135550775 + MIR SINE MIR 34 261 -1 21 0 0 0 chr11 15233782 15233803 -135549750 + AT_rich Low_complexity Low_complexity 1 21 0 2244 79 3 7 chr11 15234375 15234665 -135548888 - AluSg SINE Alu -16 294 6 1404 70 65 0 chr11 15235530 15235731 -135547822 - L1PA13 LINE L1 -11 6152 5939 1294 151 9 18 chr11 15236317 15236536 -135547017 - AluJb SINE Alu -12 300 84 684 292 178 8 chr11 15236756 15237180 -135546373 - L2 LINE L2 -238 3075 2581 1698 180 39 0 chr11 15237242 15237525 -135546028 + AluJo SINE Alu 1 294 -18 318 50 0 0 chr11 15237525 15237565 -135545988 + (TA)n Simple_repeat Simple_repeat 2 41 0 465 275 168 64 chr11 15238054 15238400 -135545153 - MLT1J LTR MaLR -45 466 85 24 0 0 0 chr11 15240414 15240438 -135543115 + AT_rich Low_complexity Low_complexity 1 24 0 2611 203 114 43 chr11 15240881 15241708 -135541845 - L1ME2 LINE L1 -6 6158 5274 3015 116 59 15 chr11 15241711 15242187 -135541366 - MER7C DNA MER2_type 0 602 106 1040 220 160 18 chr11 15242213 15242600 -135540953 - L1ME2 LINE L1 -876 5270 4829 2931 254 56 38 chr11 15243019 15243439 -135540114 - L1ME1 LINE L1 0 6166 5755 1760 159 11 14 chr11 15243439 15243722 -135539831 - AluSx SINE Alu -30 282 1 2931 254 56 38 chr11 15243722 15244814 -135538739 - L1ME1 LINE L1 -411 5755 4549 1264 84 0 0 chr11 15244817 15244983 -135538570 + MER51B LTR ERV1 212 377 0 870 154 135 0 chr11 15244983 15245149 -135538404 + MER51B-int LTR ERV1 1 165 -4715 1102 169 0 0 chr11 15245150 15245334 -135538219 + MER51B-int LTR ERV1 417 600 -7216 4703 149 18 31 chr11 15245433 15246281 -135537272 + MER51B-int LTR ERV1 608 1444 -6372 599 223 1 0 chr11 15246292 15246440 -135537113 - L1ME1 LINE L1 -1587 4559 4411 493 126 0 58 chr11 15246440 15246527 -135537026 - Tigger5 DNA MER2_type 0 2323 2242 427 203 0 0 chr11 15246668 15246742 -135536811 + Tigger5 DNA MER2_type 2247 2320 -3 424 188 0 71 chr11 15246742 15246771 -135536782 - Tigger5 DNA MER2_type -288 78 48 1443 133 161 41 chr11 15246771 15247088 -135536465 + THE1A LTR MaLR 1 355 0 424 188 0 71 chr11 15247088 15247142 -135536411 - Tigger5 DNA MER2_type -318 48 1 4678 212 49 60 chr11 15247145 15247323 -135536230 - L1ME1 LINE L1 -1741 4405 4227 2582 129 20 41 chr11 15247323 15247766 -135535787 - Tigger2a DNA MER2_type 0 434 1 4678 212 49 60 chr11 15247766 15248437 -135535116 - L1ME1 LINE L1 -1919 4227 3550 2383 80 0 7 chr11 15248437 15248736 -135534817 - AluSp SINE Alu -16 297 1 4678 212 49 60 chr11 15248736 15249548 -135534005 - L1ME1 LINE L1 -2596 3550 2761 983 96 15 0 chr11 15249676 15249811 -135533742 - MER11A LTR ERVK 0 1266 1130 3404 94 16 2 chr11 15249911 15250401 -135533152 - L1P4 LINE L1 -345 5823 5327 3849 209 78 96 chr11 15250401 15251010 -135532543 - L1ME LINE L1 -544 5618 5000 1501 199 7 10 chr11 15251010 15251301 -135532252 - AluJo SINE Alu -22 290 1 3849 209 78 96 chr11 15251301 15252744 -135530809 - L1ME LINE L1 -1162 5000 3591 208 331 99 8 chr11 15252832 15252953 -135530600 - MIR SINE MIR -108 154 23 657 278 124 22 chr11 15255493 15255856 -135527697 - HAL1 LINE L1 -14 2493 2094 826 284 161 14 chr11 15255868 15256453 -135527100 - HAL1 LINE L1 -979 1528 858 619 253 12 19 chr11 15256502 15256663 -135526890 - LTR16C LTR ERVL -56 435 276 591 174 143 31 chr11 15256663 15256824 -135526729 - MER3 DNA MER1_type 0 209 31 227 71 0 0 chr11 15256835 15256863 -135526690 - MER3 DNA MER1_type -154 55 28 441 317 66 38 chr11 15257041 15257360 -135526193 - HAL1 LINE L1 -2003 504 177 593 253 23 36 chr11 15257585 15257806 -135525747 - L1M4 LINE L1 -2378 3768 3551 183 42 0 0 chr11 15257830 15257854 -135525699 + (TG)n Simple_repeat Simple_repeat 1 24 0 318 266 55 0 chr11 15257905 15258014 -135525539 - HAL1 LINE L1 -810 1697 1583 295 211 22 56 chr11 15258323 15258413 -135525140 - MER5B DNA MER1_type -86 92 6 1665 213 153 46 chr11 15258422 15259123 -135524430 + L1ME1 LINE L1 4566 5341 -805 1907 185 127 37 chr11 15259167 15259686 -135523867 + L1ME1 LINE L1 5563 6128 -38 218 215 0 15 chr11 15260169 15260234 -135523319 + CT-rich Low_complexity Low_complexity 3 66 0 22 0 0 0 chr11 15260308 15260330 -135523223 + AT_rich Low_complexity Low_complexity 1 22 0 452 194 284 0 chr11 15260471 15260605 -135522948 + MIR SINE MIR 81 252 -10 591 328 73 49 chr11 15260999 15261466 -135522087 - L2 LINE L2 -21 3292 2815 2407 155 41 9 chr11 15262075 15262494 -135521059 + MSTB1 LTR MaLR 1 432 0 21 36 0 0 chr11 15262506 15262534 -135521019 + AT_rich Low_complexity Low_complexity 1 28 0 1050 246 31 67 chr11 15262583 15263002 -135520551 + L1MC4 LINE L1 7638 8041 -1 423 194 10 39 chr11 15263377 15263480 -135520073 + HsTC2 DNA Tc2 1 100 -1798 405 308 35 50 chr11 15263567 15263765 -135519788 - L1MEd LINE L1 -5509 610 416 306 321 38 6 chr11 15264206 15264365 -135519188 + MIR SINE MIR 99 262 0 403 291 79 65 chr11 15264458 15264750 -135518803 + MLT1K LTR MaLR 126 421 -167 314 280 21 0 chr11 15264870 15264963 -135518590 + MLT1K LTR MaLR 492 586 -2 2387 131 81 0 chr11 15265431 15265827 -135517726 - MSTA LTR MaLR 0 428 1 1863 174 3 0 chr11 15266140 15266445 -135517108 - AluJo SINE Alu -2 310 5 2119 127 3 3 chr11 15266531 15266839 -135516714 - AluSx SINE Alu -4 308 1 777 229 203 62 chr11 15267343 15267760 -135515793 + MLT2B1 LTR ERVL 1 488 -32 342 45 0 0 chr11 15267760 15267804 -135515749 + (CA)n Simple_repeat Simple_repeat 2 45 0 777 229 203 62 chr11 15267804 15267840 -135515713 + MLT2B1 LTR ERVL 488 518 -2 1067 163 6 0 chr11 15268456 15268628 -135514925 + AluJb SINE Alu 134 306 -6 869 215 0 0 chr11 15268749 15268912 -135514641 + MER3 DNA MER1_type 47 209 0 24 53 0 0 chr11 15268989 15269027 -135514526 + AT_rich Low_complexity Low_complexity 1 38 0 5356 30 5 0 chr11 15269244 15269886 -135513667 - L1P LINE L1 -1413 4733 4089 693 46 0 0 chr11 15269884 15269971 -135513582 + L1PA4 LINE L1 5701 5787 -368 * 43121 31 21 1 chr11 15269973 15276003 -135507550 + L1PA2 LINE L1 3 6155 0 3044 34 16 3 chr11 15276004 15276385 -135507168 + L1PA4 LINE L1 5770 6155 0 1280 202 36 4 chr11 15276680 15276927 -135506626 + MLT1F1 LTR MaLR 308 562 -5 290 322 0 0 chr11 15277139 15277226 -135506327 - MIR SINE MIR 0 262 176 253 288 76 30 chr11 15277367 15277499 -135506054 - L2 LINE L2 -55 3258 3121 1826 161 0 26 chr11 15277537 15277842 -135505711 + AluJo SINE Alu 3 299 -13 797 348 98 33 chr11 15277876 15278474 -135505079 - L2 LINE L2 -400 2914 2250 1141 142 42 58 chr11 15278474 15278714 -135504839 + MER46A DNA MER2_type 1 236 0 797 348 98 33 chr11 15278714 15278911 -135504642 - L2 LINE L2 -1064 2250 2067 557 308 25 0 chr11 15278926 15279085 -135504468 - L2 LINE L2 0 3313 3151 299 229 37 83 chr11 15279120 15279229 -135504324 - L2 LINE L2 -902 2412 2309 863 91 40 17 chr11 15279307 15279482 -135504071 + CT-rich Low_complexity Low_complexity 2 180 0 360 293 0 20 chr11 15279483 15279582 -135503971 + C-rich Low_complexity Low_complexity 5 101 0 7308 24 0 0 chr11 15280021 15280868 -135502685 - L1PA3 LINE L1 -3 6152 5306 1972 143 3 25 chr11 15280973 15281287 -135502266 - MER1B DNA MER1_type -16 323 17 344 216 62 0 chr11 15281287 15281384 -135502169 - L1MDb LINE L1 -4527 1879 1777 * 33126 63 15 4 chr11 15281382 15286598 -135496955 - L1PA5 LINE L1 -1 6153 881 1094 220 43 16 chr11 15286699 15287022 -135496531 + L1MDa LINE L1 2213 2544 -3996 347 370 68 22 chr11 15287358 15287636 -135495917 + L1ME LINE L1 5448 5738 -383 594 266 98 29 chr11 15288184 15288428 -135495125 - MIR SINE MIR 0 262 2 23 0 0 0 chr11 15288663 15288686 -135494867 + AT_rich Low_complexity Low_complexity 1 23 0 256 315 56 0 chr11 15289668 15289757 -135493796 - MIR3 SINE MIR -6 202 109 22 56 0 0 chr11 15290211 15290247 -135493306 + AT_rich Low_complexity Low_complexity 1 36 0 953 191 0 27 chr11 15293238 15293426 -135490127 + MER3 DNA MER1_type 1 183 -26 1432 195 104 22 chr11 15294062 15294380 -135489173 + MER2 DNA MER2_type 1 344 -1 5429 125 2 18 chr11 15295146 15295979 -135487574 - L1P LINE L1 -5325 821 2 3329 220 69 22 chr11 15295974 15296972 -135486581 - L1MDb LINE L1 -4616 1790 590 * 1020 16 0 8 chr11 15296972 15297122 -135486431 - L1PA2 LINE L1 0 6155 6032 3329 220 69 22 chr11 15297122 15297698 -135485855 - L1MDb LINE L1 -5816 590 43 2293 94 3 0 chr11 15297810 15298107 -135485446 + AluSp SINE Alu 1 298 -15 188 346 0 0 chr11 15298177 15298229 -135485324 - L2 LINE L2 -226 3046 2995 891 264 86 35 chr11 15298495 15298908 -135484645 - L2 LINE L2 -163 3150 2706 249 220 17 0 chr11 15299140 15299199 -135484354 + MER58 DNA MER1_type 2361 2420 0 214 266 63 13 chr11 15299292 15299371 -135484182 - MIR SINE MIR -89 173 91 2081 266 42 39 chr11 15299913 15300831 -135482722 + L1M4 LINE L1 3392 4312 -1834 312 211 105 60 chr11 15300831 15300964 -135482589 + L1ME4a LINE L1 5979 6117 -4 877 197 124 32 chr11 15300972 15301221 -135482332 + L1ME3A LINE L1 5894 6165 -5 28 0 0 0 chr11 15301465 15301493 -135482060 + AT_rich Low_complexity Low_complexity 1 28 0 637 259 49 0 chr11 15302615 15302777 -135480776 - MER58C DNA MER1_type -42 173 4 616 339 184 10 chr11 15303175 15303567 -135479986 - L3 LINE CR1 -656 921 462 798 216 10 41 chr11 15303777 15303971 -135479582 + MER106A DNA MER1_type 2 189 -47 326 114 51 0 chr11 15303971 15304050 -135479503 + (TA)n Simple_repeat Simple_repeat 2 84 0 378 138 0 0 chr11 15304800 15304865 -135478688 + MER5C DNA MER1_type 60 124 -200 302 236 90 22 chr11 15304874 15304963 -135478590 + MER5C DNA MER1_type 225 319 -5 711 257 59 13 chr11 15304964 15305201 -135478352 + L1ME3A LINE L1 5681 5928 -242 467 307 60 14 chr11 15305442 15305660 -135477893 - L2 LINE L2 -1478 1836 1609 30 45 0 0 chr11 15305736 15305780 -135477773 + AT_rich Low_complexity Low_complexity 1 44 0 51 31 0 0 chr11 15306971 15307036 -135476517 + AT_rich Low_complexity Low_complexity 1 65 0 480 319 125 14 chr11 15308060 15308276 -135475277 - MIR SINE MIR -18 244 5 224 261 226 0 chr11 15308291 15308406 -135475147 - MIR SINE MIR -12 250 110 888 333 40 27 chr11 15308429 15308907 -135474646 + LTR33 LTR ERVL 38 521 0 270 238 36 48 chr11 15308928 15309012 -135474541 - MIR SINE MIR -173 89 7 4164 251 106 13 chr11 15309088 15310388 -135473165 + L2 LINE L2 1446 2923 -391 498 196 152 9 chr11 15310572 15310684 -135472869 + FLAM_A SINE Alu 1 128 -5 814 160 0 0 chr11 15310695 15310814 -135472739 - FLAM_C SINE Alu -24 119 1 1338 121 27 0 chr11 15311821 15312044 -135471509 + L1MA4 LINE L1 6053 6281 -19 312 274 69 39 chr11 15312403 15312505 -135471048 + L2 LINE L2 3203 3307 -6 454 312 219 5 chr11 15312575 15312790 -135470763 - MIR SINE MIR 0 262 2 2259 104 0 0 chr11 15312992 15313290 -135470263 + AluSc SINE Alu 1 298 -11 14884 29 0 0 chr11 15313467 15316036 -135467517 + L1PA2 LINE L1 3550 6154 -1 926 268 54 12 chr11 15316159 15316578 -135466975 + LTR33 LTR ERVL 6 521 0 4583 180 58 3 chr11 15316976 15317880 -135465673 - Cheshire DNA MER1_type -5 2415 1463 790 148 0 22 chr11 15318080 15318215 -135465338 - FLAM_A SINE Alu -1 132 1 212 225 100 38 chr11 15318356 15318436 -135465117 + MIR SINE MIR 129 213 -49 200 294 15 29 chr11 15319477 15319545 -135464008 + L2 LINE L2 3238 3304 -9 636 315 74 61 chr11 15320819 15321210 -135462343 + LTR16C LTR ERVL 96 491 0 213 292 83 50 chr11 15321275 15321395 -135462158 + L3 LINE CR1 317 440 -1137 24 67 0 0 chr11 15321536 15321581 -135461972 + AT_rich Low_complexity Low_complexity 1 45 0 276 282 71 0 chr11 15321648 15321733 -135461820 - MER5B DNA MER1_type -83 95 5 215 285 127 82 chr11 15321847 15322005 -135461548 + L3 LINE CR1 944 1108 -469 861 208 104 74 chr11 15322013 15322446 -135461107 - Charlie4a DNA MER1_type 0 508 63 1138 236 40 53 chr11 15322452 15322844 -135460709 + MLT2B1 LTR ERVL 1 428 -92 240 135 22 34 chr11 15322846 15322935 -135460618 + (TA)n Simple_repeat Simple_repeat 2 89 0 293 77 0 0 chr11 15322968 15323007 -135460546 + MLT2B1 LTR ERVL 475 513 -2 295 222 16 127 chr11 15323100 15323226 -135460327 + L3 LINE CR1 1171 1282 -295 241 333 76 23 chr11 15323335 15323467 -135460086 + L3 LINE CR1 1417 1555 -22 2000 150 0 3 chr11 15323544 15323857 -135459696 + AluSx SINE Alu 1 312 0 25 51 0 0 chr11 15324971 15325010 -135458543 + AT_rich Low_complexity Low_complexity 1 39 0 2298 164 34 17 chr11 15325431 15325840 -135457713 + MSTB LTR MaLR 1 416 -10 423 276 0 19 chr11 15326199 15326304 -135457249 - LTR16A LTR ERVL -201 249 147 1883 112 35 0 chr11 15326316 15326607 -135456946 - AluSx SINE Alu 0 315 16 345 291 0 50 chr11 15326611 15326752 -135456801 - LTR16A LTR ERVL -296 154 21 1008 109 0 0 chr11 15327614 15327752 -135455801 + FLAM_C SINE Alu 6 143 0 1879 214 21 34 chr11 15328176 15328705 -135454848 + L1M4 LINE L1 4383 4904 -1242 31721 107 13 51 chr11 15328718 15335115 -135448438 + L1PA3 LINE L1 12 6153 -2 279 98 0 0 chr11 15335111 15335152 -135448401 + L1MB5 LINE L1 6128 6168 -6 * 2260 86 0 17 chr11 15335236 15335538 -135448015 + AluY SINE Alu 1 297 -14 678 310 32 0 chr11 15335572 15335759 -135447794 - MIR SINE MIR -4 258 66 199 330 64 21 chr11 15335765 15335859 -135447694 - L3 LINE CR1 -1210 367 270 415 399 66 7 chr11 15335864 15336137 -135447416 - L3 LINE CR1 -1258 319 31 342 0 0 0 chr11 15336737 15336775 -135446778 + (CA)n Simple_repeat Simple_repeat 1 38 0 755 224 83 26 chr11 15336975 15337167 -135446386 + MER3 DNA MER1_type 1 203 -6 266 258 96 48 chr11 15337702 15337869 -135445684 + L1MC4 LINE L1 7601 7775 -267 241 291 48 0 chr11 15338081 15338184 -135445369 + L1M4 LINE L1 3807 3914 -2232 1743 176 7 3 chr11 15338363 15338659 -135444894 + AluJb SINE Alu 1 297 -15 22 0 0 0 chr11 15339392 15339414 -135444139 + AT_rich Low_complexity Low_complexity 1 22 0 1096 203 111 9 chr11 15339875 15340092 -135443461 - MER8 DNA MER2_type 0 239 1 1215 294 32 53 chr11 15340481 15340974 -135442579 + L2 LINE L2 2831 3313 0 2472 73 0 0 chr11 15341176 15341478 -135442075 + AluY SINE Alu 1 302 -9 282 192 0 0 chr11 15341798 15341850 -135441703 + MIR SINE MIR 98 149 -113 198 318 63 0 chr11 15341883 15341946 -135441607 - MIR SINE MIR -188 74 8 21 0 0 0 chr11 15342206 15342227 -135441326 + AT_rich Low_complexity Low_complexity 1 21 0 923 270 83 99 chr11 15342315 15342870 -135440683 + LTR67 LTR ERVL 2 547 -10 458 276 125 15 chr11 15344066 15344280 -135439273 + MIR SINE MIR 19 256 -6 524 253 137 17 chr11 15345248 15345481 -135438072 + MIR SINE MIR 1 261 -1 1129 297 148 10 chr11 15345802 15346314 -135437239 + L2 LINE L2 1707 2289 -1025 * 1290 271 110 35 chr11 15346313 15347105 -135436448 - L2 LINE L2 0 3313 2461 513 166 7 40 chr11 15347106 15347257 -135436296 + G-rich Low_complexity Low_complexity 5 150 0 1718 137 147 0 chr11 15347877 15348191 -135435362 - MER46B DNA MER2_type 0 236 2 3972 176 40 71 chr11 15348840 15348884 -135434669 - MER21B LTR ERV1 -53 810 766 291 54 0 0 chr11 15348884 15348921 -135434632 + (CAAG)n Simple_repeat Simple_repeat 3 39 0 3972 176 40 71 chr11 15348921 15348962 -135434591 - MER21B LTR ERV1 -97 766 725 2347 104 10 0 chr11 15348962 15349271 -135434282 - AluSx SINE Alu 0 312 1 3972 176 40 71 chr11 15349271 15350020 -135433533 - MER21B LTR ERV1 -138 725 1 210 167 0 0 chr11 15350382 15350418 -135433135 + T-rich Low_complexity Low_complexity 1 36 0 6838 59 19 6 chr11 15350541 15351902 -135431651 - L1PA7 LINE L1 -8 6146 4771 451 83 0 56 chr11 15351902 15351974 -135431579 + L1P3 LINE L1 1102 1169 -5292 * 27421 114 14 73 chr11 15351968 15354896 -135428657 - L1PA7 LINE L1 -1374 4772 2266 1800 98 0 0 chr11 15354896 15355131 -135428422 + AluSg SINE Alu 55 289 -21 27421 114 14 73 chr11 15355131 15357264 -135426289 - L1PA7 LINE L1 -3880 2266 9 2852 141 134 12 chr11 15357362 15357921 -135425632 - LTR24C LTR ERV1 -8 627 1 763 221 38 0 chr11 15358076 15358234 -135425319 + MER5A DNA MER1_type 1 164 -25 988 231 46 9 chr11 15358248 15358464 -135425089 + MER58A DNA MER1_type 1 224 0 269 295 0 26 chr11 15358871 15358949 -135424604 - L2 LINE L2 -4 3268 3193 400 273 49 5 chr11 15359403 15359633 -135423920 + L1ME LINE L1 1305 1834 -4811 552 293 48 22 chr11 15359734 15359847 -135423706 + L1ME LINE L1 1807 1916 -4860 683 177 57 0 chr11 15359847 15359988 -135423565 + L1MA9 LINE L1 6164 6312 0 552 293 48 22 chr11 15359988 15360200 -135423353 + L1ME LINE L1 1916 2249 -4527 6300 63 3 22 chr11 15360211 15360567 -135422986 + L1PA7 LINE L1 5315 5676 -478 2134 76 41 28 chr11 15360567 15360857 -135422696 + AluY SINE Alu 1 294 -17 6300 63 3 22 chr11 15360857 15360974 -135422579 + L1PA7 LINE L1 5676 5794 -360 2817 22 0 0 chr11 15360974 15361285 -135422268 + AluYa5 SINE Alu 1 311 0 6300 63 3 22 chr11 15361285 15361666 -135421887 + L1PA7 LINE L1 5794 6154 0 347 303 68 22 chr11 15361681 15362051 -135421502 + L1ME LINE L1 2306 2692 -4133 293 129 81 16 chr11 15362064 15362126 -135421427 + L1ME LINE L1 998 1063 -5479 2163 102 0 45 chr11 15362161 15362475 -135421078 + AluSx SINE Alu 1 300 -12 630 236 42 51 chr11 15362581 15362894 -135420659 + L1MB7 LINE L1 870 1179 -5363 2100 223 108 11 chr11 15362921 15363548 -135420005 + L1MB7 LINE L1 4600 5287 -1357 1925 179 31 5 chr11 15363566 15363957 -135419596 + L1MB7 LINE L1 6074 6474 -208 1792 209 6 6 chr11 15363957 15364297 -135419256 + MLT1A1 LTR MaLR 1 340 -25 9187 23 25 0 chr11 15364563 15366441 -135417112 - L1PA3 LINE L1 0 6155 4251 907 188 28 24 chr11 15366472 15366685 -135416868 + L1MB7 LINE L1 6469 6682 0 715 200 186 27 chr11 15366691 15366986 -135416567 + L1ME LINE L1 3279 3620 -3024 494 264 7 0 chr11 15367012 15367152 -135416401 + L1ME LINE L1 3927 4067 -2577 2162 129 21 3 chr11 15367236 15367570 -135415983 + MLT1A1 LTR MaLR 26 365 0 1244 189 44 83 chr11 15367570 15368110 -135415443 - MLT1D LTR MaLR -18 487 1 1873 243 76 34 chr11 15368111 15368955 -135414598 + L1ME LINE L1 4075 4953 -1691 2087 112 0 32 chr11 15369075 15369388 -135414165 + AluSx SINE Alu 1 303 -9 1006 156 13 0 chr11 15369388 15369542 -135414011 + AluSg/x SINE Alu 137 292 -20 352 259 24 9 chr11 15369587 15369638 -135413915 + L1MB8 LINE L1 5254 5303 -896 1300 260 167 23 chr11 15369638 15370154 -135413399 - MLT1E LTR MaLR -2 591 2 352 259 24 9 chr11 15370154 15370315 -135413238 + L1MB8 LINE L1 5303 5469 -730 294 29 0 0 chr11 15370336 15370371 -135413182 + (CA)n Simple_repeat Simple_repeat 2 36 0 1667 178 58 41 chr11 15370376 15370718 -135412835 - MLT2D LTR ERVL -48 366 19 309 238 123 16 chr11 15370993 15371115 -135412438 + L2 LINE L2 3179 3313 0 5073 56 2 0 chr11 15371218 15371846 -135411707 + L1PA5 LINE L1 5526 6154 0 1548 178 56 7 chr11 15371865 15372151 -135411402 + AluJb SINE Alu 1 300 -12 28 61 0 0 chr11 15372151 15372200 -135411353 + AT_rich Low_complexity Low_complexity 1 49 0 490 206 235 18 chr11 15372841 15373011 -135410542 - MER6B DNA MER2_type -3 207 1 22 0 0 0 chr11 15373137 15373159 -135410394 + AT_rich Low_complexity Low_complexity 1 22 0 303 299 17 51 chr11 15374067 15374184 -135409369 + L1ME LINE L1 14 126 -5944 325 148 0 0 chr11 15374469 15374523 -135409030 - L1MB7 LINE L1 -31 6153 6100 484 62 0 0 chr11 15374566 15374631 -135408922 + L1M4 LINE L1 3573 3637 -2509 1269 196 57 21 chr11 15374644 15374975 -135408578 + L1MB8 LINE L1 5781 6123 -55 1526 187 66 32 chr11 15374976 15375324 -135408229 + MLT1A1 LTR MaLR 6 365 0 582 246 229 34 chr11 15375378 15375838 -135407715 - MLT1G1 LTR MaLR -52 515 16 234 273 65 0 chr11 15376151 15376228 -135407325 - MIR SINE MIR -59 203 122 1682 165 37 30 chr11 15376303 15376600 -135406953 - AluJo SINE Alu -13 299 1 19308 185 32 21 chr11 15376698 15383721 -135399832 + L1PA13 LINE L1 2 7601 0 2254 118 58 3 chr11 15383884 15384248 -135399305 + L1PA13 LINE L1 5769 6152 -11 876 255 150 3 chr11 15384259 15384585 -135398968 - L1ME3A LINE L1 -114 6056 5683 29 28 0 0 chr11 15385470 15385506 -135398047 + AT_rich Low_complexity Low_complexity 1 36 0 23 54 0 0 chr11 15386302 15386339 -135397214 + AT_rich Low_complexity Low_complexity 1 37 0 2016 131 0 10 chr11 15387344 15387650 -135395903 - AluSq SINE Alu -10 303 1 358 257 53 66 chr11 15388367 15388519 -135395034 + MIR SINE MIR 110 259 -3 269 341 101 14 chr11 15388709 15388847 -135394706 - MIR SINE MIR -111 151 2 256 330 23 0 chr11 15388882 15388970 -135394583 - MIR SINE MIR -14 248 159 185 167 28 0 chr11 15389609 15389645 -135393908 + L2 LINE L2 3174 3210 -62 25 0 0 0 chr11 15389828 15389853 -135393700 + AT_rich Low_complexity Low_complexity 1 25 0 1432 179 16 20 chr11 15390074 15390325 -135393228 + AluJo SINE Alu 1 250 -62 24 0 0 0 chr11 15390716 15390740 -135392813 + AT_rich Low_complexity Low_complexity 1 24 0 228 267 33 17 chr11 15390746 15390866 -135392687 - L1MEc LINE L1 -4946 1450 1329 588 159 56 0 chr11 15390870 15390977 -135392576 - MLT1D-int LTR MaLR -1256 115 3 1254 181 78 16 chr11 15390980 15391196 -135392357 - MLT1D LTR MaLR 0 505 271 1989 140 3 16 chr11 15391196 15391511 -135392042 - AluSx SINE Alu -1 311 1 1254 181 78 16 chr11 15391511 15391537 -135392016 - MLT1D LTR MaLR -234 271 248 1815 218 21 19 chr11 15391671 15392102 -135391451 - MLT1-int LTR MaLR -768 603 172 2251 67 0 3 chr11 15392359 15392676 -135390877 - AluY SINE Alu 0 316 1 397 368 30 13 chr11 15392676 15392910 -135390643 + ERVL LTR ERVL 436 673 -5091 275 372 31 0 chr11 15392942 15393071 -135390482 + ERVL LTR ERVL 797 929 -4835 299 262 12 0 chr11 15393106 15393190 -135390363 + ERVL LTR ERVL 871 955 -4530 258 301 0 21 chr11 15393198 15393291 -135390262 + ERVL LTR ERVL 1121 1211 -4553 2453 294 50 19 chr11 15393485 15394376 -135389177 + ERVL LTR ERVL 2000 2972 -2565 1272 307 72 30 chr11 15394760 15395356 -135388197 + ERVL LTR ERVL 3378 3998 -1656 1945 213 6 19 chr11 15395356 15395715 -135387838 + MLT2D LTR ERVL 1 449 -71 258 32 0 0 chr11 15395715 15395746 -135387807 + (TC)n Simple_repeat Simple_repeat 2 32 0 1945 213 6 19 chr11 15395746 15395818 -135387735 + MLT2D LTR ERVL 449 520 0 965 126 132 0 chr11 15395960 15396119 -135387434 - MSTA LTR MaLR 0 428 249 739 106 0 0 chr11 15396123 15396227 -135387326 - AluJb SINE Alu -208 104 1 938 102 57 6 chr11 15396227 15396384 -135387169 - L1 LINE L1 -1374 4772 4608 854 211 0 15 chr11 15396379 15396578 -135386975 - L1 LINE L1 -1788 4358 4163 * 24 0 0 0 chr11 15396803 15396827 -135386726 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr11 15396961 15396984 -135386569 + AT_rich Low_complexity Low_complexity 1 23 0 662 211 24 42 chr11 15396991 15397157 -135386396 + FAM SINE Alu 1 163 -12 39487 37 1 2 chr11 15398749 15403534 -135380019 + L1P LINE L1 7 4790 -1356 1887 96 43 28 chr11 15403634 15403916 -135379637 - AluY SINE Alu -25 286 1 234 0 0 0 chr11 15404303 15404329 -135379224 + (TG)n Simple_repeat Simple_repeat 2 27 0 252 333 64 50 chr11 15404603 15404744 -135378809 + MIR3 SINE MIR 8 150 -58 2082 111 7 0 chr11 15404842 15405148 -135378405 - AluSx SINE Alu 0 308 1 764 279 181 29 chr11 15405452 15405573 -135377980 + L2 LINE L2 2616 2717 -596 789 176 8 0 chr11 15405573 15405704 -135377849 + FLAM_C SINE Alu 2 133 0 764 279 181 29 chr11 15405704 15406193 -135377360 + L2 LINE L2 2717 3306 -7 2351 85 3 0 chr11 15407312 15407606 -135375947 - AluSc SINE Alu -12 297 3 689 234 78 63 chr11 15407760 15408274 -135375279 + HAL1 LINE L1 975 1567 -940 441 243 46 59 chr11 15408277 15408429 -135375124 - L2 LINE L2 0 3313 3164 342 151 0 0 chr11 15408441 15408514 -135375039 + GA-rich Low_complexity Low_complexity 2 74 0 465 286 30 26 chr11 15408562 15408762 -135374791 + L1MEc LINE L1 1568 1824 -752 1647 178 41 36 chr11 15408780 15409145 -135374408 + THE1C LTR MaLR 1 367 -8 2237 91 3 3 chr11 15409366 15409663 -135373890 + AluY SINE Alu 1 297 -14 277 191 12 95 chr11 15411598 15411682 -135371871 + MIR SINE MIR 65 141 -121 23 20 0 61 chr11 15412160 15412209 -135371344 + AT_rich Low_complexity Low_complexity 1 46 0 350 131 16 33 chr11 15412540 15412601 -135370952 - L2 LINE L2 0 3313 3254 21 57 0 0 chr11 15413299 15413334 -135370219 + AT_rich Low_complexity Low_complexity 1 35 0 305 291 60 26 chr11 15413352 15413469 -135370084 - MIR SINE MIR -60 202 82 204 179 0 0 chr11 15413696 15413735 -135369818 + (CATATA)n Simple_repeat Simple_repeat 4 42 0 4098 132 48 3 chr11 15414413 15415093 -135368460 - MER50 LTR ERV1 -23 711 1 247 226 0 38 chr11 15415093 15415146 -135368407 + L3 LINE CR1 1520 1570 -7 2299 94 0 0 chr11 15415378 15415665 -135367888 - AluSg SINE Alu -23 287 1 3350 65 10 0 chr11 15415681 15416279 -135367274 - L1PA7 LINE L1 -1 6153 5359 10719 93 9 25 chr11 15416279 15417996 -135365557 + L1P LINE L1 1669 3357 -2789 30 45 0 0 chr11 15418410 15418454 -135365099 + AT_rich Low_complexity Low_complexity 1 44 0 1064 212 62 21 chr11 15418741 15418982 -135364571 + MIR SINE MIR 11 261 -1 349 248 139 15 chr11 15419558 15419695 -135363858 - MIR SINE MIR -34 228 75 1097 155 130 0 chr11 15420590 15420797 -135362756 + MER46A DNA MER2_type 2 235 -1 191 273 0 0 chr11 15420898 15420942 -135362611 - L2 LINE L2 -8 3264 3221 23 54 0 0 chr11 15421558 15421595 -135361958 + AT_rich Low_complexity Low_complexity 1 37 0 1413 80 11 5 chr11 15421639 15421827 -135361726 + AluY SINE Alu 106 294 -17 204 265 44 116 chr11 15421914 15422095 -135361458 + L2 LINE L2 3062 3229 -84 26 30 0 0 chr11 15422106 15422139 -135361414 + AT_rich Low_complexity Low_complexity 1 33 0 257 232 188 0 chr11 15422143 15422212 -135361341 + L2 LINE L2 3232 3313 0 361 314 97 33 chr11 15425116 15425437 -135358116 - L2 LINE L2 -229 3043 2692 1099 172 4 147 chr11 15425449 15425728 -135357825 + MER8 DNA MER2_type 1 239 0 1376 143 174 31 chr11 15425747 15426161 -135357392 + LTR54B LTR ERV1 24 496 -2 394 307 124 51 chr11 15426269 15426526 -135357027 - L2 LINE L2 -826 2488 2213 365 176 24 24 chr11 15426541 15426626 -135356927 + LTR45 LTR ERV1 441 525 0 679 109 10 0 chr11 15426699 15426800 -135356753 + AluJ/FLAM SINE Alu 1 102 -210 508 301 92 58 chr11 15426819 15427232 -135356321 - L1MEc LINE L1 -3623 2592 2202 331 193 126 22 chr11 15427529 15427664 -135355889 - HAL1b LINE L1 -517 831 683 316 281 70 9 chr11 15428555 15428669 -135354884 + MIR3 SINE MIR 82 202 -6 651 174 99 0 chr11 15429028 15429149 -135354404 + FLAM_C SINE Alu 1 133 0 459 223 29 0 chr11 15429937 15430040 -135353513 - MER94 DNA DNA -2 132 27 24 0 0 0 chr11 15430235 15430259 -135353294 + AT_rich Low_complexity Low_complexity 1 24 0 182 281 258 22 chr11 15431529 15431618 -135351935 + MIR SINE MIR 19 128 -80 222 271 278 8 chr11 15432653 15432786 -135350767 + MIR SINE MIR 44 212 -50 21 36 0 0 chr11 15433565 15433593 -135349960 + AT_rich Low_complexity Low_complexity 1 28 0 2062 156 30 30 chr11 15434319 15434717 -135348836 + MSTB LTR MaLR 29 426 0 336 281 37 0 chr11 15434828 15434910 -135348643 + L2 LINE L2 1234 1318 -1996 847 297 238 3 chr11 15434922 15435245 -135348308 - L2 LINE L2 -4 3309 2911 276 312 161 0 chr11 15435308 15435401 -135348152 + MER91A DNA MER1_type 89 196 0 10752 25 6 3 chr11 15435448 15437490 -135346063 + L1PA3 LINE L1 4112 6155 0 376 316 64 15 chr11 15438938 15439130 -135344423 + MIR3 SINE MIR 6 208 0 951 273 38 35 chr11 15440452 15440771 -135342782 + L2 LINE L2 2365 2684 -630 * 1200 268 68 16 chr11 15440767 15441147 -135342406 + L2 LINE L2 2914 3313 0 186 336 76 42 chr11 15441484 15441603 -135341950 + L2 LINE L2 3150 3272 0 2307 73 3 3 chr11 15442640 15442940 -135340613 + AluY SINE Alu 1 300 -11 2590 42 0 10 chr11 15443328 15443640 -135339913 - AluY SINE Alu 0 311 3 214 286 113 15 chr11 15443974 15444107 -135339446 + MIR SINE MIR 95 240 -22 692 237 130 56 chr11 15445900 15446188 -135337365 - L2 LINE L2 0 3313 2993 1958 194 45 47 chr11 15446188 15446694 -135336859 - MLT1D LTR MaLR 0 505 1 692 237 130 56 chr11 15446694 15446760 -135336793 - L2 LINE L2 -320 2993 2933 968 188 41 5 chr11 15448085 15448303 -135335250 - MER96B DNA MER1_type? -183 234 9 213 167 0 42 chr11 15448700 15448748 -135334805 + (TGG)n Simple_repeat Simple_repeat 1 46 0 294 301 98 14 chr11 15449006 15449149 -135334404 - MIR3 SINE MIR -45 163 9 * 474 236 95 47 chr11 15449136 15449284 -135334269 - L2 LINE L2 -1 3312 3158 484 290 89 30 chr11 15451327 15451496 -135332057 - MIR3 SINE MIR -11 197 19 183 156 0 0 chr11 15451496 15451528 -135332025 + T-rich Low_complexity Low_complexity 1 32 0 2233 233 19 15 chr11 15451634 15452163 -135331390 + LTR31 LTR ERV1 74 604 -15 2371 84 3 3 chr11 15453654 15453963 -135329590 - AluSq SINE Alu -4 309 1 1370 227 15 61 chr11 15454148 15454610 -135328943 + L1ME2 LINE L1 5698 6138 -26 306 233 48 107 chr11 15454657 15454863 -135328690 + L1MC4 LINE L1 7821 8014 -28 25 0 0 0 chr11 15454934 15454959 -135328594 + AT_rich Low_complexity Low_complexity 1 25 0 459 323 65 0 chr11 15455058 15455259 -135328294 + L1ME LINE L1 5559 5772 -349 875 299 56 36 chr11 15455561 15455744 -135327809 + LTR16A LTR ERVL 17 195 -255 940 236 0 6 chr11 15455744 15455922 -135327631 - MER45A DNA AcHobo 0 178 2 875 299 56 36 chr11 15455922 15456152 -135327401 + LTR16A LTR ERVL 195 438 -12 2286 178 28 8 chr11 15456308 15456808 -135326745 + L1MB4 LINE L1 5634 6143 -37 911 198 61 36 chr11 15456818 15457065 -135326488 + L1MCc LINE L1 19 271 -6152 274 235 15 0 chr11 15457083 15457151 -135326402 + MLT2B2 LTR ERVL 153 221 -294 644 239 39 0 chr11 15457154 15457334 -135326219 + MER96B DNA MER1_type? 230 416 -1 186 133 0 0 chr11 15458539 15458569 -135324984 + (TG)n Simple_repeat Simple_repeat 2 31 0 375 23 0 0 chr11 15459254 15459298 -135324255 + (TG)n Simple_repeat Simple_repeat 2 45 0 190 259 111 12 chr11 15459559 15459640 -135323913 - MIR SINE MIR -76 132 44 530 256 231 15 chr11 15461100 15461303 -135322250 - MIR SINE MIR -14 248 2 2688 260 94 69 chr11 15461701 15463240 -135320313 - L1MEc LINE L1 -2016 4199 2635 2443 93 0 0 chr11 15463240 15463540 -135320013 - AluSp SINE Alu -13 300 1 2688 260 94 69 chr11 15463540 15464055 -135319498 - L1MEc LINE L1 -3580 2635 2135 239 188 78 0 chr11 15464119 15464183 -135319370 + L1ME2 LINE L1 6087 6155 -9 466 360 19 0 chr11 15465430 15465591 -135317962 + L2 LINE L2 2915 3078 -194 1435 202 11 57 chr11 15465677 15465848 -135317705 + MLT2C1 LTR ERVL 3 149 -248 2049 154 21 3 chr11 15465848 15466186 -135317367 + MER2 DNA MER2_type 1 344 0 1435 202 11 57 chr11 15466186 15466386 -135317167 + MLT2C1 LTR ERVL 149 357 -40 246 128 0 0 chr11 15466409 15466448 -135317105 + (TA)n Simple_repeat Simple_repeat 2 40 0 40 59 0 0 chr11 15466466 15466534 -135317019 + AT_rich Low_complexity Low_complexity 1 68 0 225 372 51 0 chr11 15466606 15466684 -135316869 + L2 LINE L2 3141 3222 -50 354 294 110 22 chr11 15467453 15467589 -135315964 + MER5A DNA MER1_type 36 183 -6 264 360 70 0 chr11 15468117 15468217 -135315336 + MIR SINE MIR 40 146 -62 1240 149 115 62 chr11 15468332 15468620 -135314933 + AluJo SINE Alu 1 303 -9 219 69 0 0 chr11 15468620 15468649 -135314904 + (GGAA)n Simple_repeat Simple_repeat 1 29 0 200 114 0 29 chr11 15468653 15468688 -135314865 + (GAAAA)n Simple_repeat Simple_repeat 1 34 0 1406 271 155 19 chr11 15468901 15469425 -135314128 + MLT1G1 LTR MaLR 1 595 0 1484 177 18 92 chr11 15469588 15469978 -135313575 - MLT1A1 LTR MaLR -4 361 1 251 218 139 0 chr11 15470078 15470179 -135313374 + L1MC/D LINE L1 5729 5843 -1965 1879 157 3 10 chr11 15470704 15471004 -135312549 + AluJo SINE Alu 3 300 -12 193 336 93 37 chr11 15471699 15471806 -135311747 - L2 LINE L2 0 3272 3160 2441 135 38 21 chr11 15471952 15472373 -135311180 + MSTA LTR MaLR 1 428 0 223 392 0 0 chr11 15472465 15472562 -135310991 - MIR SINE MIR -7 255 159 484 391 13 4 chr11 15472670 15472908 -135310645 + L2 LINE L2 2738 2977 -337 337 324 123 9 chr11 15473089 15473308 -135310245 + L2 LINE L2 2977 3220 -52 195 129 0 0 chr11 15473784 15473815 -135309738 + (TGAG)n Simple_repeat Simple_repeat 1 31 0 763 153 0 114 chr11 15473974 15474150 -135309403 + L1MD3 LINE L1 6702 6880 -928 2491 161 106 27 chr11 15474153 15474745 -135308808 + L1MD3 LINE L1 7352 7990 -5 426 234 189 17 chr11 15475372 15475547 -135308006 - MIR SINE MIR -10 252 48 1380 156 29 25 chr11 15475596 15475834 -135307719 + MER8 DNA MER2_type 1 239 0 1774 189 103 7 chr11 15476296 15476713 -135306840 - LTR32 LTR ERVL 0 471 15 245 363 15 37 chr11 15477029 15477164 -135306389 + MIR3 SINE MIR 13 144 -64 285 98 0 0 chr11 15477270 15477311 -135306242 + (CAA)n Simple_repeat Simple_repeat 2 42 0 245 197 42 28 chr11 15477336 15477407 -135306146 - MLT1G1 LTR MaLR -19 576 505 427 285 60 60 chr11 15477465 15477665 -135305888 - MLT1I LTR MaLR -125 284 85 339 242 113 40 chr11 15477785 15477909 -135305644 - MIR SINE MIR -2 260 128 302 317 150 56 chr11 15478677 15478983 -135304570 - L2 LINE L2 -9 3263 2929 1739 163 69 67 chr11 15479052 15479518 -135304035 + MLT1C LTR MaLR 1 467 0 253 299 95 50 chr11 15479689 15479930 -135303623 - MLT1L LTR MaLR -14 601 350 863 265 55 48 chr11 15480125 15480525 -135303028 - MLT1H LTR MaLR -8 541 139 5713 115 14 3 chr11 15480548 15481038 -135302515 - L1PA16 LINE L1 -9 6157 5673 180 0 0 0 chr11 15481038 15481058 -135302495 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 5713 115 14 3 chr11 15481058 15481606 -135301947 - L1PA16 LINE L1 -493 5673 5105 434 182 114 53 chr11 15483608 15483740 -135299813 - MER5B DNA MER1_type -5 173 34 216 188 275 0 chr11 15483924 15483993 -135299560 + MIR SINE MIR 66 153 -109 496 114 0 25 chr11 15484120 15484199 -135299354 - Charlie3 DNA MER1_type -8 2702 2626 18607 93 7 3 chr11 15484350 15485996 -135297557 - Charlie3 DNA MER1_type -86 2620 956 2117 131 39 28 chr11 15485996 15486355 -135297198 - THE1B LTR MaLR -1 363 1 18607 93 7 3 chr11 15486355 15487316 -135296237 - Charlie3 DNA MER1_type -1750 956 1 717 97 0 0 chr11 15487807 15487910 -135295643 + (TTCC)n Simple_repeat Simple_repeat 2 104 0 546 133 0 0 chr11 15488328 15488418 -135295135 + (GGGGA)n Simple_repeat Simple_repeat 4 93 0 279 280 30 106 chr11 15489264 15489354 -135294199 + MIR3 SINE MIR 72 152 -56 2058 125 0 14 chr11 15489354 15489680 -135293873 + AluSx SINE Alu 1 322 0 279 280 30 106 chr11 15489680 15489720 -135293833 + MIR3 SINE MIR 152 193 -15 1750 142 151 9 chr11 15490712 15491057 -135292496 - MSTA LTR MaLR -34 394 1 8391 166 28 13 chr11 15491057 15492677 -135290876 - MSTA-int LTR MaLR 0 1651 7 2187 123 0 25 chr11 15492678 15492996 -135290557 - AluSx SINE Alu -2 310 1 1808 157 141 8 chr11 15493004 15493379 -135290174 - MSTA LTR MaLR 0 428 4 * 2033 179 113 5 chr11 15493379 15493807 -135289746 - MLT2B1 LTR ERVL -42 478 3 249 257 86 0 chr11 15493927 15493997 -135289556 - L2 LINE L2 -38 3275 3200 1180 279 251 6 chr11 15494119 15494631 -135288922 + L2 LINE L2 1490 1875 -1439 2647 168 72 72 chr11 15494631 15495358 -135288195 - LTR8A LTR ERV1 0 727 1 1180 279 251 6 chr11 15495358 15495507 -135288046 + L2 LINE L2 1875 2313 -1001 521 232 38 44 chr11 15495970 15496220 -135287333 - L1ME LINE L1 -344 5822 5578 482 228 186 25 chr11 15496948 15497185 -135286368 + ORSL DNA AcHobo 1 275 0 24 53 0 0 chr11 15498023 15498061 -135285492 + AT_rich Low_complexity Low_complexity 1 38 0 442 274 53 81 chr11 15498815 15499039 -135284514 + L1MEd LINE L1 641 870 -5440 1553 210 24 30 chr11 15499039 15499411 -135284142 - MLT1A2 LTR MaLR -4 370 1 442 274 53 81 chr11 15499411 15499620 -135283933 + L1MEd LINE L1 870 1083 -5227 2045 147 7 7 chr11 15499620 15499927 -135283626 + AluSx SINE Alu 1 307 -5 442 274 53 81 chr11 15499927 15500465 -135283088 + L1MEd LINE L1 1083 1626 -4684 3745 190 32 9 chr11 15501380 15502227 -135281326 + MER63C DNA MER1_type 65 930 0 192 339 92 0 chr11 15502698 15502763 -135280790 - MIR SINE MIR -108 100 30 236 319 0 0 chr11 15502777 15502849 -135280704 + (CATA)n Simple_repeat Simple_repeat 3 74 0 436 303 27 64 chr11 15503674 15503862 -135279691 - MIR3 SINE MIR -13 195 15 281 302 93 39 chr11 15504609 15504738 -135278815 - L2 LINE L2 -21 3251 3116 405 221 32 21 chr11 15504793 15504888 -135278665 + MER5A DNA MER1_type 4 99 -90 250 260 68 14 chr11 15504900 15504973 -135278580 - MER5B DNA MER1_type -7 171 95 260 338 116 64 chr11 15504982 15505476 -135278077 - L2 LINE L2 -183 3089 2566 347 149 0 15 chr11 15505476 15505543 -135278010 + MLT1E3 LTR MaLR 559 624 0 639 253 6 6 chr11 15505543 15505709 -135277844 + MLT1E3-int LTR MaLR 1 166 -1205 188 213 106 0 chr11 15505919 15505966 -135277587 - MER5B DNA MER1_type -49 129 78 971 213 29 14 chr11 15506038 15506245 -135277308 + MER63A DNA MER1_type 1 210 0 387 329 71 37 chr11 15507505 15507778 -135275775 - L2 LINE L2 -255 3058 2778 305 308 136 10 chr11 15508357 15508555 -135274998 + L3 LINE CR1 1344 1566 -11 1531 253 24 3 chr11 15508878 15509254 -135274299 - MLT1F1 LTR MaLR -1 566 183 1624 234 110 51 chr11 15509295 15509451 -135274102 + L1ME2 LINE L1 5255 5400 -764 1792 179 0 20 chr11 15509451 15509748 -135273805 - AluJb SINE Alu -17 295 5 1624 234 110 51 chr11 15509748 15510215 -135273338 + L1ME2 LINE L1 5400 5940 -224 331 55 18 18 chr11 15510215 15510270 -135273283 + (TCTA)n Simple_repeat Simple_repeat 2 56 0 1624 234 110 51 chr11 15510270 15510463 -135273090 + L1ME2 LINE L1 5940 6120 -44 665 318 13 26 chr11 15510597 15510830 -135272723 + MIR SINE MIR 8 237 -25 238 248 75 30 chr11 15510847 15510980 -135272573 + L1M4 LINE L1 3818 3956 -2190 277 214 12 36 chr11 15511041 15511125 -135272428 + L1M4 LINE L1 4084 4165 -1981 22 0 0 0 chr11 15511419 15511441 -135272112 + AT_rich Low_complexity Low_complexity 1 22 0 410 340 65 25 chr11 15511615 15511894 -135271659 - L1M4 LINE L1 -3633 2513 2224 385 304 54 29 chr11 15512383 15512587 -135270966 - L1ME3 LINE L1 -190 5972 5764 489 17 0 0 chr11 15512708 15512768 -135270785 + L1PA6 LINE L1 6093 6152 -2 29 28 0 0 chr11 15512843 15512879 -135270674 + AT_rich Low_complexity Low_complexity 1 36 0 878 132 10 181 chr11 15512886 15513196 -135270357 - MLT1B LTR MaLR -133 257 1 943 200 96 40 chr11 15513427 15513796 -135269757 + MSTC LTR MaLR 3 428 0 235 301 12 12 chr11 15513892 15513975 -135269578 - MLT1F1 LTR MaLR -381 168 86 19874 29 0 2 chr11 15514622 15517790 -135265763 + L1PA3 LINE L1 2983 6155 0 874 268 148 25 chr11 15517992 15518600 -135264953 - L2 LINE L2 0 3313 2650 343 244 124 96 chr11 15518593 15518884 -135264669 + L3 LINE CR1 1278 1576 -1 * 706 175 7 44 chr11 15518901 15519038 -135264515 + L2 LINE L2 3182 3313 0 223 351 184 0 chr11 15519040 15519154 -135264399 + MIR3 SINE MIR 66 200 -8 680 265 18 6 chr11 15519999 15520165 -135263388 - MIR SINE MIR -55 207 40 589 179 68 0 chr11 15523103 15523220 -135260333 - MER63 DNA MER1_type 0 1061 937 674 180 97 70 chr11 15523379 15523464 -135260089 - MER63 DNA MER1_type -825 236 155 2278 97 0 0 chr11 15523464 15523753 -135259800 + AluSx SINE Alu 1 289 -23 674 180 97 70 chr11 15523753 15523895 -135259658 - MER63 DNA MER1_type -906 155 3 265 292 0 0 chr11 15524995 15525060 -135258493 + GA-rich Low_complexity Low_complexity 2 66 0 183 80 0 0 chr11 15525116 15525141 -135258412 + (CGG)n Simple_repeat Simple_repeat 2 26 0 408 259 64 53 chr11 15525682 15525851 -135257702 + MIR SINE MIR 14 183 -62 215 219 78 31 chr11 15527955 15528019 -135255534 + L2 LINE L2 3205 3271 -1 2337 171 53 36 chr11 15529062 15529508 -135254045 + L1MA9 LINE L1 5712 6170 -142 198 0 0 0 chr11 15529508 15529530 -135254023 + (CA)n Simple_repeat Simple_repeat 1 22 0 2337 171 53 36 chr11 15529530 15529631 -135253922 + L1MA9 LINE L1 6170 6268 -44 205 342 150 0 chr11 15529870 15529990 -135253563 - MIR SINE MIR -1 261 124 21 57 0 0 chr11 15530306 15530341 -135253212 + AT_rich Low_complexity Low_complexity 1 35 0 419 230 174 43 chr11 15530494 15530655 -135252898 + MIR3 SINE MIR 16 197 -11 1970 164 101 42 chr11 15532160 15532637 -135250916 - MLT1D LTR MaLR 0 505 1 464 317 119 15 chr11 15534125 15534358 -135249195 + MIR SINE MIR 10 262 0 2382 147 41 14 chr11 15535567 15535982 -135247571 - MSTC LTR MaLR 0 428 3 284 77 19 39 chr11 15537064 15537116 -135246437 + L1PA12 LINE L1 10 60 -7521 1397 128 0 15 chr11 15537123 15537327 -135246226 - AluSx SINE Alu -105 207 7 1874 238 31 6 chr11 15537332 15538321 -135245232 - L1MB3 LINE L1 -352 5831 4818 2215 120 7 0 chr11 15538363 15538672 -135244881 + AluSp SINE Alu 1 311 -2 1302 199 5 76 chr11 15538795 15539021 -135244532 - L1MA4 LINE L1 -153 6147 5961 1850 149 30 0 chr11 15539021 15539290 -135244263 - AluSx SINE Alu -35 277 1 1302 199 5 76 chr11 15539290 15539470 -135244083 - L1MA4 LINE L1 -339 5961 5770 23 33 0 0 chr11 15539479 15539509 -135244044 + AT_rich Low_complexity Low_complexity 1 30 0 415 211 95 14 chr11 15539512 15539659 -135243894 + HsTC2 DNA Tc2 1632 1790 -108 433 278 76 21 chr11 15539760 15539940 -135243613 + MER5B DNA MER1_type 10 178 0 857 214 36 0 chr11 15540045 15540241 -135243312 - MER6B DNA MER2_type -7 203 1 1493 143 5 5 chr11 15542125 15542348 -135241205 + AluSq SINE Alu 2 224 -89 1119 180 259 2 chr11 15542350 15542800 -135240753 + SATR1 Satellite Satellite 1 565 -3 506 215 200 45 chr11 15542825 15543025 -135240528 + SATR1 Satellite Satellite 185 415 -55 816 214 225 51 chr11 15543037 15543388 -135240165 + SATR1 Satellite Satellite 14 425 -45 2087 176 108 24 chr11 15543426 15546360 -135237193 + SATR1 Satellite Satellite 1 3180 -132 26790 88 4 4 chr11 15546360 15551162 -135232391 + L1PA7 LINE L1 1677 6468 -1 330 268 147 13 chr11 15551203 15551360 -135232193 - HAL1b LINE L1 -153 1195 1018 3053 208 68 30 chr11 15551672 15553111 -135230442 - L1ME2 LINE L1 -13 6220 4726 1378 267 40 28 chr11 15553113 15553764 -135229789 - L1ME2 LINE L1 -1864 4351 3693 1375 289 39 55 chr11 15553798 15554848 -135228705 - L1ME2 LINE L1 -5325 1071 39 503 307 36 50 chr11 15554857 15555134 -135228419 - HAL1b LINE L1 -1014 334 62 329 309 71 8 chr11 15555563 15555689 -135227864 + L2 LINE L2 3012 3145 -168 2030 204 119 36 chr11 15556616 15557368 -135226185 + Charlie2 DNA MER1_type 1855 2690 -172 1773 140 0 23 chr11 15557368 15557632 -135225921 + AluSx SINE Alu 39 296 -16 2030 204 119 36 chr11 15557632 15557746 -135225807 + Charlie2 DNA MER1_type 2690 2793 -69 207 282 141 29 chr11 15557770 15557940 -135225613 + MIR SINE MIR 71 259 -3 448 283 181 13 chr11 15558257 15558494 -135225059 + L2 LINE L2 3037 3313 0 264 401 62 0 chr11 15558530 15558692 -135224861 + L3 LINE CR1 471 642 -935 630 182 34 62 chr11 15559231 15559407 -135224146 - MER3 DNA MER1_type -22 187 17 1911 120 0 0 chr11 15560091 15560350 -135223203 + AluSg SINE Alu 35 293 -17 267 299 28 73 chr11 15560769 15560946 -135222607 + L3 LINE CR1 754 922 -655 811 95 103 0 chr11 15561322 15561448 -135222105 - MER85 DNA T2_type 0 139 1 302 167 0 0 chr11 15561541 15561595 -135221958 + MLT1K LTR MaLR 517 570 -18 203 366 54 0 chr11 15561606 15561699 -135221854 + L3 LINE CR1 955 1052 -525 212 303 26 26 chr11 15561730 15561806 -135221747 + L3 LINE CR1 1148 1223 -354 245 317 58 19 chr11 15561861 15561965 -135221588 - L3 LINE CR1 -27 1550 1443 216 326 95 32 chr11 15561975 15562070 -135221483 - L2 LINE L2 -8 3264 3164 2949 164 57 66 chr11 15564465 15565162 -135218391 - LTR8 LTR ERV1 0 691 1 1322 234 78 0 chr11 15565162 15565457 -135218096 - HUERS-P1 LTR ERV1 0 6263 5946 663 219 171 0 chr11 15565537 15565701 -135217852 - LTR49-int LTR ERV1 -57 6274 6083 1898 176 53 48 chr11 15565774 15566189 -135217364 - LTR49-int LTR ERV1 -541 5790 5374 1416 77 0 0 chr11 15566190 15566359 -135217194 - AluYa5 SINE Alu -12 299 131 3862 154 24 74 chr11 15566359 15566554 -135216999 - LTR49-int LTR ERV1 -630 5633 5430 2011 128 14 3 chr11 15566554 15566850 -135216703 - AluY SINE Alu -10 301 3 3862 154 24 74 chr11 15566850 15567464 -135216089 - LTR49-int LTR ERV1 -833 5430 4865 6219 218 19 66 chr11 15567490 15569393 -135214160 + L1P3 LINE L1 1209 3779 -3805 2234 135 62 8 chr11 15569393 15569749 -135213804 + THE1C LTR MaLR 1 375 0 7874 132 175 6 chr11 15569749 15571101 -135212452 + THE1C-int LTR MaLR 1 1580 0 1953 170 62 14 chr11 15571101 15571459 -135212094 + THE1C LTR MaLR 1 375 0 7171 147 5 13 chr11 15571460 15572689 -135210864 + L1P3 LINE L1 3776 4994 -2590 6080 206 14 13 chr11 15622694 15624048 -135159505 - L1 LINE L1 -2343 5222 3868 2855 204 34 55 chr11 15624052 15624280 -135159273 - L1M4 LINE L1 -841 6326 6095 2386 74 3 3 chr11 15624280 15624579 -135158974 + AluY SINE Alu 1 299 -12 2855 204 34 55 chr11 15624579 15625170 -135158383 - L1M4 LINE L1 -1072 6095 5524 * 11049 189 21 57 chr11 15625155 15627235 -135156318 - L1M4 LINE L1 -4975 2193 202 2171 136 0 0 chr11 15627235 15627543 -135156010 - AluSx SINE Alu -4 308 1 11049 189 21 57 chr11 15627543 15627738 -135155815 - L1M4 LINE L1 -6966 202 1 642 118 36 9 chr11 15627784 15627894 -135155659 - L1 LINE L1 -4613 2952 2840 8206 124 7 3 chr11 15627908 15629121 -135154432 - HSMAR2 DNA Mariner -45 1257 41 16735 165 11 33 chr11 15629141 15629159 -135154394 - L1 LINE L1 -4702 2863 2846 3134 127 33 0 chr11 15629159 15629641 -135153912 - L1PA14 LINE L1 0 6161 5664 16735 165 11 33 chr11 15629641 15630144 -135153409 - L1 LINE L1 -4719 2846 2333 1657 26 0 0 chr11 15630144 15630337 -135153216 + L1PA4 LINE L1 5960 6152 -3 16735 165 11 33 chr11 15630337 15632650 -135150903 - L1 LINE L1 -5232 2333 91 277 259 52 35 chr11 15633072 15633188 -135150365 - LTR67 LTR ERVL 0 557 440 * 1104 272 108 46 chr11 15633169 15633606 -135149947 - MLT1F LTR MaLR -78 464 1 1458 196 7 123 chr11 15636738 15637151 -135146402 - MLT1A1 LTR MaLR 0 365 1 305 278 70 32 chr11 15637216 15637403 -135146150 - L1ME4a LINE L1 -260 5861 5668 469 265 117 25 chr11 15637485 15637647 -135145906 - L1ME4a LINE L1 -2167 5641 5465 552 325 24 0 chr11 15637718 15637927 -135145626 + L3 LINE CR1 1330 1543 -34 * 1319 252 52 31 chr11 15637926 15638370 -135145183 + L2 LINE L2 1176 1628 -1686 384 302 44 22 chr11 15638346 15638528 -135145025 + L2 LINE L2 2821 3006 -307 * 694 247 42 25 chr11 15638548 15638831 -135144722 + L1M4 LINE L1 2206 2493 -3653 617 301 177 15 chr11 15639674 15640086 -135143467 + LTR33 LTR ERVL 38 516 -5 192 274 63 32 chr11 15640718 15640813 -135142740 - L2 LINE L2 -86 3227 3130 211 326 118 52 chr11 15640909 15641292 -135142261 - L2 LINE L2 -501 2813 2406 1686 170 14 7 chr11 15641806 15642100 -135141453 + AluJb SINE Alu 2 297 -15 423 234 154 23 chr11 15642170 15642345 -135141208 + MIR SINE MIR 49 246 -16 705 274 5 5 chr11 15642920 15643106 -135140447 - MER5A DNA MER1_type -1 188 3 277 179 0 0 chr11 15643635 15643691 -135139862 + MIR3 SINE MIR 104 159 -49 699 181 5 96 chr11 15643777 15643965 -135139588 + MER63B DNA MER1_type 4 174 -262 326 263 42 0 chr11 15643968 15644063 -135139490 + MER5A DNA MER1_type 91 189 0 1399 187 6 63 chr11 15644687 15645003 -135138550 - AluJo SINE Alu -14 298 1 499 185 0 0 chr11 15645115 15645196 -135138357 + MER5A DNA MER1_type 2 82 -107 321 314 46 20 chr11 15646357 15646510 -135137043 + MIR SINE MIR 73 229 -33 436 209 75 45 chr11 15646525 15646659 -135136894 + MIR SINE MIR 74 211 -51 426 20 0 0 chr11 15647275 15647326 -135136227 + (TG)n Simple_repeat Simple_repeat 2 52 0 2869 50 3 3 chr11 15647521 15647864 -135135689 - HERVK11 LTR ERVK -4699 3254 2912 * 3069 84 40 3 chr11 15647858 15648435 -135135118 - HERVK11 LTR ERVK -5255 2698 1165 * 5036 149 35 57 chr11 15648433 15649431 -135134122 - HERVK11 LTR ERVK -6977 976 1 6986 103 20 24 chr11 15649431 15650517 -135133036 - MER11C LTR ERVK 0 1236 1 2416 102 25 0 chr11 15651105 15651467 -135132086 + L1MA1 LINE L1 5932 6302 0 385 204 21 11 chr11 15654578 15654671 -135128882 - MIR SINE MIR -70 138 45 271 228 22 0 chr11 15657974 15658066 -135125487 + CT-rich Low_complexity Low_complexity 2 95 0 638 216 66 56 chr11 15658606 15658819 -135124734 - MIR SINE MIR -1 261 47 593 233 121 102 chr11 15658948 15659518 -135124035 - L1MC5 LINE L1 -51 7910 7330 230 250 20 50 chr11 15659518 15659618 -135123935 - L2 LINE L2 -447 2867 2771 513 239 398 13 chr11 15659618 15660153 -135123400 - LTR50 LTR ERVL -2 793 53 4460 231 77 18 chr11 15660157 15660628 -135122925 - L1MD3 LINE L1 -743 5403 4961 1044 183 56 103 chr11 15660628 15661037 -135122516 + MLT1B LTR MaLR 1 390 0 4460 231 77 18 chr11 15661037 15662569 -135120984 - L1MD3 LINE L1 -1185 4961 4086 2186 231 76 11 chr11 15662579 15663104 -135120449 + MLT1F1 LTR MaLR 1 559 -8 320 246 34 51 chr11 15663106 15663224 -135120329 - L1MD3 LINE L1 -2093 4053 3938 1642 86 0 0 chr11 15663240 15663450 -135120103 + L1PA12 LINE L1 5927 6136 -32 2112 224 50 34 chr11 15663550 15664364 -135119189 - L1MD3 LINE L1 -2516 3630 2804 51 14 0 14 chr11 15664377 15664408 -135119145 + AT_rich Low_complexity Low_complexity 1 31 -37 1346 114 19 0 chr11 15664408 15664618 -135118935 - L1PB1 LINE L1 -5 6146 5933 51 14 0 14 chr11 15664618 15664655 -135118898 + AT_rich Low_complexity Low_complexity 31 68 0 4672 95 16 22 chr11 15664963 15664988 -135118565 + L1PB1 LINE L1 5464 5488 -663 2427 103 3 0 chr11 15664988 15665298 -135118255 + AluSp SINE Alu 1 311 -2 4672 95 16 22 chr11 15665298 15665309 -135118244 + L1PB1 LINE L1 5488 6151 0 4729 95 0 12 chr11 15665309 15665964 -135117589 + L1PB1 LINE L1 5505 6151 0 755 228 20 0 chr11 15665960 15666162 -135117391 + L1M4 LINE L1 2315 2520 -3626 * 6510 190 51 21 chr11 15666187 15667801 -135115752 - L1P5 LINE L1 -674 5477 3814 467 128 37 18 chr11 15667902 15668011 -135115542 + GA-rich Low_complexity Low_complexity 3 113 0 2021 125 4 0 chr11 15669430 15669709 -135113844 - AluSx SINE Alu -32 280 1 401 308 112 9 chr11 15671289 15671503 -135112050 - MIR SINE MIR -1 261 26 243 63 0 0 chr11 15672295 15672330 -135111223 + MIR SINE MIR 112 145 -117 355 331 0 15 chr11 15672449 15672579 -135110974 + MIR SINE MIR 20 147 -61 358 349 51 53 chr11 15672676 15673235 -135110318 - L2 LINE L2 0 3272 2716 221 154 0 0 chr11 15673248 15673287 -135110266 - L2 LINE L2 0 3272 3234 26 64 0 0 chr11 15673428 15673475 -135110078 + AT_rich Low_complexity Low_complexity 1 47 0 3721 224 140 11 chr11 15673501 15674609 -135108944 - L1MC4 LINE L1 -104 7938 6688 239 268 110 0 chr11 15674682 15674764 -135108789 - L2 LINE L2 -222 3091 3001 1429 296 40 43 chr11 15674927 15675898 -135107655 + L2 LINE L2 2308 3272 0 252 328 40 8 chr11 15675903 15676028 -135107525 - L2 LINE L2 -861 2453 2325 210 247 13 26 chr11 15676489 15676566 -135106987 + (CTCA)n Simple_repeat Simple_repeat 1 76 0 790 293 159 11 chr11 15677355 15677997 -135105556 - L2 LINE L2 0 3313 2577 204 333 10 20 chr11 15678344 15678443 -135105110 - L2 LINE L2 -214 3058 2961 254 273 13 13 chr11 15678997 15679074 -135104479 - MIR3 SINE MIR -42 166 90 1500 132 0 0 chr11 15680274 15680487 -135103066 + AluSg/x SINE Alu 93 305 -5 474 288 20 14 chr11 15680487 15680633 -135102920 + MIR3 SINE MIR 48 194 -14 499 224 21 36 chr11 15680876 15681044 -135102509 - MIR SINE MIR -62 146 25 825 266 136 26 chr11 15681683 15682266 -135101287 - L1MEd LINE L1 -1278 4851 4205 2511 264 104 37 chr11 15682489 15684430 -135099123 - L1MEd LINE L1 -1915 4214 2119 21 0 0 0 chr11 15684476 15684497 -135099056 + AT_rich Low_complexity Low_complexity 1 21 0 1781 195 0 3 chr11 15684752 15685054 -135098499 - AluJb SINE Alu -11 301 1 915 279 127 34 chr11 15685113 15685903 -135097650 - L1MEd LINE L1 -4612 1698 689 228 294 0 15 chr11 15685915 15685983 -135097570 - L1MEd LINE L1 -5589 530 464 285 313 50 12 chr11 15686228 15686388 -135097165 - L1MEd LINE L1 -5943 176 11 454 221 123 26 chr11 15686517 15686671 -135096882 + MIR SINE MIR 78 246 -16 553 193 72 66 chr11 15686671 15686837 -135096716 - MER104 DNA Tc2 0 180 14 295 292 204 0 chr11 15687169 15687282 -135096271 - MLT1J2 LTR MaLR -14 436 301 279 0 0 0 chr11 15687296 15687327 -135096226 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 24 32 0 0 chr11 15687419 15687450 -135096103 + AT_rich Low_complexity Low_complexity 1 31 0 252 245 0 0 chr11 15687695 15687744 -135095809 - L2 LINE L2 -16 3256 3208 753 190 16 174 chr11 15688212 15688528 -135095025 - MLT1A1 LTR MaLR -2 363 98 16088 114 23 10 chr11 15688528 15690895 -135092658 - Tigger1 DNA MER2_type 0 2418 21 394 139 38 25 chr11 15690893 15690972 -135092581 - MLT1A1 LTR MaLR -348 80 1 * 267 207 284 9 chr11 15691234 15691350 -135092203 - MIR SINE MIR -65 197 50 397 279 206 20 chr11 15692036 15692240 -135091313 - MIR SINE MIR -6 256 15 1703 179 26 19 chr11 15693044 15693352 -135090201 - AluJo SINE Alu -2 310 1 638 188 87 7 chr11 15693390 15693528 -135090025 + MIR SINE MIR 104 252 -10 196 229 0 0 chr11 15694415 15694463 -135089090 + L2 LINE L2 2712 2759 -555 209 271 60 60 chr11 15694571 15694737 -135088816 + L2 LINE L2 2918 3083 -189 596 26 65 0 chr11 15695290 15695367 -135088186 - L1PA5 LINE L1 -8 6146 6065 502 313 102 24 chr11 15695844 15696227 -135087326 - L2 LINE L2 -337 2977 2565 291 274 27 0 chr11 15696524 15696597 -135086956 - LTR67 LTR ERVL -386 171 97 238 193 121 0 chr11 15696718 15696801 -135086752 - MIR SINE MIR -60 202 110 247 269 183 86 chr11 15697624 15697821 -135085732 - MIR SINE MIR -27 235 20 378 222 0 12 chr11 15698535 15698616 -135084937 + MIR SINE MIR 183 262 0 275 241 135 15 chr11 15699902 15700035 -135083518 - MIR SINE MIR 0 262 114 287 308 154 8 chr11 15700063 15700193 -135083360 - L2 LINE L2 -2 3270 3122 883 284 135 18 chr11 15700659 15701043 -135082510 - MLT1L LTR MaLR -8 607 179 494 170 47 28 chr11 15701194 15701300 -135082253 + MER53 DNA DNA 1 108 -81 408 292 71 13 chr11 15703308 15703462 -135080091 + MIR SINE MIR 13 175 -87 1406 134 124 72 chr11 15703566 15703856 -135079697 + MER1B DNA MER1_type 35 339 0 1047 288 86 10 chr11 15704571 15704828 -135078725 - LTR16A LTR ERVL -1 449 146 1000 216 138 27 chr11 15704828 15705161 -135078392 + MER93b LTR ERV1 1 370 -3 1047 288 86 10 chr11 15705161 15705320 -135078233 - LTR16A LTR ERVL -304 146 1 221 286 43 0 chr11 15705320 15705390 -135078163 - MIR SINE MIR -76 132 60 236 327 0 36 chr11 15705520 15705630 -135077923 - L2 LINE L2 -9 3263 3158 336 238 29 9 chr11 15706203 15706308 -135077245 - MIR3 SINE MIR -3 205 99 198 209 0 0 chr11 15706655 15706698 -135076855 + L2 LINE L2 3271 3313 0 516 228 152 24 chr11 15707062 15707245 -135076308 + MIR3 SINE MIR 2 205 -3 193 377 50 2 chr11 15707610 15707734 -135075819 + L2 LINE L2 2850 2976 -296 267 354 44 0 chr11 15707905 15708018 -135075535 - L2 LINE L2 -3 3310 3193 454 277 183 22 chr11 15708865 15709089 -135074464 + MIR SINE MIR 3 262 0 349 283 10 30 chr11 15709074 15709173 -135074380 + MIR SINE MIR 57 153 -109 * 190 250 161 36 chr11 15710404 15710516 -135073037 + L2 LINE L2 2376 2501 -813 327 257 108 20 chr11 15710876 15711024 -135072529 + L2 LINE L2 2924 3084 -188 500 286 148 0 chr11 15711075 15711264 -135072289 + MIR SINE MIR 11 227 -35 189 0 0 0 chr11 15711326 15711347 -135072206 + (T)n Simple_repeat Simple_repeat 1 21 0 231 279 59 0 chr11 15711365 15711433 -135072120 + L2 LINE L2 3199 3270 -43 775 336 4 0 chr11 15712082 15712341 -135071212 + MIR SINE MIR 2 261 -1 240 287 92 73 chr11 15712531 15712803 -135070750 - L2 LINE L2 -77 3195 2919 240 320 16 8 chr11 15712868 15712990 -135070563 - MIR3 SINE MIR -72 136 14 286 259 265 16 chr11 15713309 15713498 -135070055 + MIR SINE MIR 14 249 -13 1015 289 33 43 chr11 15714632 15715192 -135068361 + L2 LINE L2 2760 3311 -2 363 284 76 99 chr11 15715561 15716042 -135067511 - HAL1b LINE L1 -790 627 172 2073 129 16 13 chr11 15716042 15716352 -135067201 - AluY SINE Alu 0 311 1 363 284 76 99 chr11 15716352 15716441 -135067112 - HAL1b LINE L1 -1245 172 82 2071 122 116 3 chr11 15717185 15717512 -135066041 + THE1B LTR MaLR 1 364 0 683 259 5 11 chr11 15717847 15718032 -135065521 - MIR SINE MIR -58 204 21 186 167 0 48 chr11 15718449 15718491 -135065062 + L2 LINE L2 3180 3219 -94 196 243 215 28 chr11 15719160 15719267 -135064286 - L2 LINE L2 -5 3308 3182 397 314 186 0 chr11 15719291 15719501 -135064052 + MIR SINE MIR 14 262 0 21 0 0 0 chr11 15719506 15719527 -135064026 + AT_rich Low_complexity Low_complexity 1 21 0 1660 137 0 80 chr11 15719933 15720247 -135063306 - AluJo SINE Alu -23 289 1 2373 100 15 6 chr11 15720562 15720915 -135062638 - L1PA10 LINE L1 0 6168 5823 467 282 25 6 chr11 15721024 15721187 -135062366 - MIR SINE MIR -6 256 91 836 211 22 26 chr11 15721187 15721415 -135062138 + L1ME3A LINE L1 5944 6170 0 200 250 0 0 chr11 15721431 15721475 -135062078 - MIR SINE MIR -158 104 61 1571 102 4 35 chr11 15721981 15722236 -135061317 - AluSg/x SINE Alu 0 312 78 3221 175 8 19 chr11 15722236 15722397 -135061156 - L1MD3 LINE L1 -27 7968 7807 1491 203 81 9 chr11 15722397 15722718 -135060835 + MER2 DNA MER2_type 1 344 0 3221 175 8 19 chr11 15722718 15723178 -135060375 - L1MD3 LINE L1 -188 7807 7354 278 332 19 42 chr11 15725053 15725267 -135058286 - L2 LINE L2 -228 3044 2836 375 314 66 40 chr11 15725514 15725788 -135057765 + L1MC4a LINE L1 5679 5959 -1849 228 228 0 0 chr11 15726066 15726123 -135057430 + (TATATG)n Simple_repeat Simple_repeat 6 62 0 958 282 41 43 chr11 15726465 15727021 -135056532 + L2 LINE L2 2759 3311 -2 336 230 108 40 chr11 15727502 15727650 -135055903 - L1ME4a LINE L1 -1 6120 5963 553 163 0 0 chr11 15727843 15727929 -135055624 - FLAM SINE Alu -18 125 40 362 211 67 58 chr11 15728695 15728799 -135054754 - MIR SINE MIR -10 252 148 729 258 72 0 chr11 15728813 15729007 -135054546 + MIR SINE MIR 13 220 -42 308 348 22 22 chr11 15729024 15729159 -135054394 - MIR SINE MIR -112 150 16 216 376 0 17 chr11 15729966 15730144 -135053409 + (CA)n Simple_repeat Simple_repeat 2 176 0 467 252 16 0 chr11 15731073 15731200 -135052353 - MIR3 SINE MIR -15 193 65 288 278 123 49 chr11 15731516 15731722 -135051831 + MIR SINE MIR 18 256 -6 2236 84 0 7 chr11 15732439 15732764 -135050789 + AluY SINE Alu 1 323 0 278 227 40 27 chr11 15733762 15733837 -135049716 + L2 LINE L2 3204 3279 -34 3672 222 99 44 chr11 15735269 15735653 -135047900 + Charlie2a DNA MER1_type 1 363 -2499 2324 108 0 19 chr11 15735653 15735969 -135047584 + AluSp SINE Alu 1 310 -3 3672 222 99 44 chr11 15735969 15736022 -135047531 + Charlie2a DNA MER1_type 363 412 -2450 246 62 0 0 chr11 15736022 15736054 -135047499 + (TG)n Simple_repeat Simple_repeat 2 33 0 3672 222 99 44 chr11 15736054 15736978 -135046575 + Charlie2a DNA MER1_type 412 1284 -1578 2298 113 0 0 chr11 15736978 15737279 -135046274 - AluSc SINE Alu -6 303 3 3672 222 99 44 chr11 15737279 15738534 -135045019 + Charlie2a DNA MER1_type 1284 2846 -16 2032 228 41 37 chr11 15739484 15739972 -135043581 - MLT1H1 LTR MaLR -65 490 1 504 241 373 0 chr11 15740526 15740762 -135042791 - LTR16B LTR ERVL -67 397 74 330 184 195 0 chr11 15741024 15741111 -135042442 + MIR3 SINE MIR 86 189 -19 561 207 0 27 chr11 15741951 15742113 -135041440 - FLAM_A SINE Alu 0 166 8 248 157 20 0 chr11 15742121 15742172 -135041381 - MIR SINE MIR -108 154 103 2634 30 3 7 chr11 15743566 15743867 -135039686 - AluY SINE Alu -11 300 1 342 274 98 0 chr11 15745085 15745187 -135038366 + L2 LINE L2 3155 3266 -6 407 291 56 28 chr11 15745537 15745716 -135037837 - MIR SINE MIR -70 192 9 534 220 23 0 chr11 15745718 15745850 -135037703 - MER69 DNA AcHobo -1 2525 2391 4819 38 5 3 chr11 15745883 15746463 -135037090 - L1PA5 LINE L1 -3 6151 5571 536 279 25 12 chr11 15746463 15746624 -135036929 - MER69 DNA AcHobo -844 382 220 340 306 53 41 chr11 15746921 15747091 -135036462 + MER5A DNA MER1_type 17 188 -1 372 284 135 45 chr11 15747180 15747402 -135036151 - MIR SINE MIR -3 259 18 476 228 188 0 chr11 15747466 15747615 -135035938 - MER5B DNA MER1_type 0 178 2 271 312 104 29 chr11 15748300 15748473 -135035080 + MIR3 SINE MIR 8 193 -15 303 298 63 13 chr11 15748800 15748958 -135034595 - MIR SINE MIR -1 261 96 608 283 106 4 chr11 15749285 15749522 -135034031 - MIR SINE MIR 0 262 2 424 297 55 15 chr11 15749613 15749815 -135033738 - MIR SINE MIR -37 225 16 216 111 0 0 chr11 15751240 15751276 -135032277 + (TA)n Simple_repeat Simple_repeat 2 37 0 220 342 171 0 chr11 15751687 15751804 -135031749 + L2 LINE L2 3136 3272 0 255 182 0 36 chr11 15752119 15752174 -135031379 + L2 LINE L2 3234 3286 -27 345 24 0 0 chr11 15752742 15752784 -135030769 + (CA)n Simple_repeat Simple_repeat 1 42 0 314 302 0 0 chr11 15754663 15754759 -135028794 - MIR SINE MIR -57 151 56 283 345 9 26 chr11 15754852 15754965 -135028588 - MIR SINE MIR -58 150 40 595 269 48 0 chr11 15755569 15755755 -135027798 - MIR SINE MIR -19 243 49 242 254 0 45 chr11 15756138 15756205 -135027348 - MIR SINE MIR -62 146 83 684 180 31 8 chr11 15756212 15756340 -135027213 - L2 LINE L2 0 3313 3183 1535 213 37 19 chr11 15756343 15756667 -135026886 + MER58B DNA MER1_type 10 339 -2 417 270 110 38 chr11 15756709 15756946 -135026607 - MIR SINE MIR 0 262 9 498 246 0 0 chr11 15757709 15757823 -135025730 + FLAM_C SINE Alu 27 140 -3 242 261 162 9 chr11 15758283 15758409 -135025144 - MIR SINE MIR -56 152 9 296 333 49 7 chr11 15759306 15759450 -135024103 + MIR SINE MIR 93 242 -20 280 254 145 29 chr11 15761795 15761933 -135021620 + MIR SINE MIR 46 199 -63 350 273 53 38 chr11 15762291 15762423 -135021130 - MIR3 SINE MIR -39 169 36 284 313 10 10 chr11 15762757 15762856 -135020697 + MIR SINE MIR 38 136 -72 468 0 0 0 chr11 15763097 15763149 -135020404 + (TG)n Simple_repeat Simple_repeat 1 52 0 3042 241 71 48 chr11 15763820 15764710 -135018843 - L1MC/D LINE L1 -706 5458 4543 2067 83 6 102 chr11 15764710 15765034 -135018519 - AluSx SINE Alu -19 293 1 3042 241 71 48 chr11 15765034 15765560 -135017993 - L1MC/D LINE L1 -1621 4543 4030 251 62 0 0 chr11 15765788 15765820 -135017733 + Alu SINE Alu 30 61 -238 438 92 0 0 chr11 15765820 15765885 -135017668 + Alu SINE Alu 242 306 -6 379 268 32 57 chr11 15765892 15766015 -135017538 + MER5B DNA MER1_type 59 178 0 1728 195 65 34 chr11 15767253 15767637 -135015916 + MSTD LTR MaLR 1 396 0 336 272 26 9 chr11 15768099 15768213 -135015340 + MIR SINE MIR 19 134 -74 226 156 22 0 chr11 15768979 15769024 -135014529 + CT-rich Low_complexity Low_complexity 1 46 0 242 265 44 0 chr11 15769078 15769146 -135014407 + L2 LINE L2 3193 3263 -9 199 284 168 0 chr11 15769498 15769593 -135013960 - MIR SINE MIR -28 234 124 275 281 156 22 chr11 15769595 15769650 -135013903 - MIR SINE MIR -86 176 130 2477 98 59 8 chr11 15769650 15770007 -135013546 - THE1C LTR MaLR 0 375 1 275 281 156 22 chr11 15770007 15770086 -135013467 - MIR SINE MIR -132 130 24 1269 296 54 18 chr11 15770376 15770934 -135012619 + L1ME3A LINE L1 5374 5951 -219 201 74 0 0 chr11 15771164 15771191 -135012362 + (TA)n Simple_repeat Simple_repeat 2 28 0 325 333 45 0 chr11 15771676 15771853 -135011700 - MER5A DNA MER1_type -1 188 4 747 261 36 27 chr11 15773116 15773338 -135010215 + MIR SINE MIR 17 240 -22 211 253 105 0 chr11 15773637 15773732 -135009821 - MIR SINE MIR -56 152 48 229 273 0 0 chr11 15775514 15775569 -135007984 - MIR SINE MIR -73 135 81 496 225 108 96 chr11 15775590 15775839 -135007714 - MER102b DNA MER1_type 0 341 90 417 301 78 31 chr11 15776607 15776800 -135006753 + MIR SINE MIR 20 221 -41 633 336 72 24 chr11 15777667 15778042 -135005511 + L2 LINE L2 2921 3313 0 284 222 114 66 chr11 15778055 15778222 -135005331 + MIR SINE MIR 45 219 -43 318 362 48 10 chr11 15779856 15780063 -135003490 + MIR SINE MIR 48 262 0 533 303 61 14 chr11 15780500 15780735 -135002818 + MIR SINE MIR 8 250 -12 741 251 28 24 chr11 15782015 15782226 -135001327 + MIR SINE MIR 5 216 -46 2724 137 31 21 chr11 15782359 15782400 -135001153 - MSTA LTR MaLR 0 428 389 1581 186 18 14 chr11 15782400 15782508 -135001045 + AluJb SINE Alu 24 130 -182 654 35 53 0 chr11 15782508 15782622 -135000931 + (TA)n Simple_repeat Simple_repeat 1 120 0 1581 186 18 14 chr11 15782622 15782792 -135000761 + AluJb SINE Alu 130 303 -9 2724 137 31 21 chr11 15782792 15783174 -135000379 - MSTA LTR MaLR -39 389 1 1640 106 18 0 chr11 15783878 15784104 -134999449 + MER30 DNA MER1_type 1 230 0 668 209 0 0 chr11 15785000 15785139 -134998414 - FLAM_A SINE Alu 0 139 1 2269 208 65 9 chr11 15785164 15785625 -134997928 + MLT1D LTR MaLR 19 505 0 234 302 151 0 chr11 15785625 15785731 -134997822 - MIR SINE MIR -139 123 2 337 53 18 35 chr11 15786276 15786333 -134997220 + (TTCC)n Simple_repeat Simple_repeat 4 59 0 27 29 0 0 chr11 15787212 15787246 -134996307 + AT_rich Low_complexity Low_complexity 1 34 0 2390 92 3 0 chr11 15788355 15788660 -134994893 + AluSx SINE Alu 1 306 -6 337 273 56 28 chr11 15789682 15789825 -134993728 - L2 LINE L2 -10 3262 3116 581 213 255 5 chr11 15789866 15790054 -134993499 + MIR SINE MIR 7 241 -21 333 240 31 0 chr11 15790076 15790172 -134993381 - LTR33 LTR ERVL -20 501 403 494 254 158 46 chr11 15790275 15790535 -134993018 - MER102b DNA MER1_type -4 337 49 433 310 80 11 chr11 15791070 15791257 -134992296 + MIR SINE MIR 48 247 -15 418 253 11 0 chr11 15791919 15792093 -134991460 + (TTCA)n Simple_repeat Simple_repeat 3 178 0 380 299 42 7 chr11 15792114 15792258 -134991295 - L2 LINE L2 0 3313 3165 190 289 22 82 chr11 15793180 15793315 -134990238 + MIR SINE MIR 80 206 -56 192 298 0 0 chr11 15794036 15794083 -134989470 + MIR SINE MIR 59 105 -103 395 248 9 18 chr11 15794090 15794199 -134989354 - L2 LINE L2 0 3313 3206 1679 207 64 24 chr11 15794231 15794685 -134988868 - Charlie4a DNA MER1_type -7 501 30 232 292 79 0 chr11 15794859 15794948 -134988605 + L3 LINE CR1 1207 1302 -275 301 309 10 46 chr11 15796260 15796630 -134986923 + CT-rich Low_complexity Low_complexity 1 356 0 293 324 37 0 chr11 15797190 15797298 -134986255 + MIR SINE MIR 81 192 -70 460 254 42 88 chr11 15797576 15797836 -134985717 - L2 LINE L2 0 3272 3025 275 116 0 0 chr11 15797892 15797935 -134985618 + tRNA-Cys-TGC tRNA tRNA 1 43 -32 823 183 0 144 chr11 15799420 15799628 -134983925 - MER63A DNA MER1_type 0 210 33 340 266 112 51 chr11 15799815 15800029 -134983524 - MIR SINE MIR -31 231 5 198 309 48 48 chr11 15800158 15800284 -134983269 - MIR3 SINE MIR -47 161 36 207 0 0 0 chr11 15800315 15800338 -134983215 + (TA)n Simple_repeat Simple_repeat 1 23 0 3258 195 23 10 chr11 15800338 15801089 -134982464 - Charlie1a DNA MER1_type -652 803 1 184 193 48 96 chr11 15801089 15801172 -134982381 - MIR3 SINE MIR -48 160 82 884 316 99 15 chr11 15801349 15801805 -134981748 - LTR33 LTR ERVL 0 521 28 388 251 22 71 chr11 15802737 15802965 -134980588 + MIR SINE MIR 3 214 -48 485 257 83 0 chr11 15803251 15803297 -134980256 - MLT1F1 LTR MaLR -7 535 494 267 79 0 0 chr11 15803297 15803335 -134980218 + (CAA)n Simple_repeat Simple_repeat 2 39 0 485 257 83 0 chr11 15803335 15803432 -134980121 - MLT1F1 LTR MaLR -48 494 380 1300 223 18 55 chr11 15803443 15803771 -134979782 + L1MB7 LINE L1 14 329 -6213 * 4064 195 48 7 chr11 15803769 15804984 -134978569 + L1MB7 LINE L1 5421 6682 0 1669 234 43 13 chr11 15804987 15805384 -134978169 - MLT1F1 LTR MaLR -158 409 1 21 0 0 0 chr11 15806214 15806235 -134977318 + AT_rich Low_complexity Low_complexity 1 21 0 254 186 164 93 chr11 15806624 15806764 -134976789 - MIR SINE MIR -13 249 100 1011 197 86 4 chr11 15807036 15807270 -134976283 + MIR SINE MIR 5 257 -5 214 326 148 0 chr11 15807359 15807494 -134976059 - MIR3 SINE MIR -6 202 48 479 279 137 18 chr11 15807525 15807744 -134975809 - MIR SINE MIR -14 248 4 354 123 0 0 chr11 15808290 15808347 -134975206 + (TG)n Simple_repeat Simple_repeat 2 58 0 2242 101 10 0 chr11 15809073 15809369 -134974184 - AluSq SINE Alu -14 299 1 1993 172 86 32 chr11 15810084 15810527 -134973026 + MLT1C LTR MaLR 1 467 0 310 364 8 8 chr11 15812260 15812392 -134971161 - MIR SINE MIR -108 154 23 409 297 126 7 chr11 15812991 15813215 -134970338 + MIR SINE MIR 19 262 0 280 296 11 0 chr11 15813568 15813656 -134969897 + MER117 DNA MER1_type 1 89 -108 188 265 103 15 chr11 15813727 15813795 -134969758 + MIR SINE MIR 64 137 -125 228 284 157 10 chr11 15814134 15814236 -134969317 - MIR SINE MIR -123 139 23 923 278 108 59 chr11 15815037 15815237 -134968316 + L1M4 LINE L1 838 1027 -5617 318 26 0 0 chr11 15815237 15815276 -134968277 + (CA)n Simple_repeat Simple_repeat 2 40 0 923 278 108 59 chr11 15815276 15816153 -134967400 + L1M4 LINE L1 1027 1938 -4706 2265 200 48 58 chr11 15816168 15816707 -134966846 - MLT1E2 LTR MaLR -3 623 90 915 201 81 100 chr11 15816722 15817031 -134966522 - MLT1E2 LTR MaLR -234 392 90 1232 180 54 138 chr11 15817046 15817474 -134966079 - MLT1E2 LTR MaLR -234 392 1 326 305 30 18 chr11 15817498 15817662 -134965891 + L1M4 LINE L1 2004 2169 -4475 589 280 113 16 chr11 15817973 15818352 -134965201 - L1MEc LINE L1 -2582 3633 3218 640 279 106 33 chr11 15819551 15819910 -134963643 - L1MEc LINE L1 -4616 1780 1396 1807 228 34 39 chr11 15819911 15820502 -134963051 - L1MEc LINE L1 -5117 1279 692 1348 241 35 22 chr11 15820504 15820873 -134962680 - L1MEc LINE L1 -5995 401 28 758 320 40 17 chr11 15822319 15822619 -134960934 + MLT1I LTR MaLR 72 378 -31 644 175 0 0 chr11 15822730 15822833 -134960720 + AluSp/q SINE Alu 202 304 -9 466 269 39 32 chr11 15822931 15823087 -134960466 + MLT1J1 LTR MaLR 3 159 -287 459 278 119 7 chr11 15823113 15823264 -134960289 + MLT1J2 LTR MaLR 264 431 -19 506 90 0 13 chr11 15823780 15823858 -134959695 + (TCCC)n Simple_repeat Simple_repeat 4 80 0 210 143 0 0 chr11 15823867 15823902 -134959651 + (T)n Simple_repeat Simple_repeat 1 35 0 316 306 86 105 chr11 15824518 15824822 -134958731 + L2 LINE L2 2971 3268 -4 2145 48 0 4 chr11 15825462 15825735 -134957818 - L1P LINE L1 -1015 5131 4860 236 328 0 0 chr11 15825782 15825849 -134957704 + L2 LINE L2 3186 3252 -20 624 282 59 56 chr11 15825892 15826197 -134957356 - L2 LINE L2 0 3313 3008 299 293 0 0 chr11 15826208 15826283 -134957270 - L2 LINE L2 -3 3269 3195 229 267 40 0 chr11 15826365 15826440 -134957113 + GA-rich Low_complexity Low_complexity 2 79 0 2112 196 8 6 chr11 15826446 15826809 -134956744 - MLT1A1 LTR MaLR -1 364 1 3042 196 31 19 chr11 15826809 15827391 -134956162 - MLT1A1-int LTR MaLR 0 1735 1147 2507 78 0 3 chr11 15827533 15827841 -134955712 - AluY SINE Alu -4 307 1 1109 224 0 9 chr11 15827883 15828097 -134955456 - MER20 DNA MER1_type 0 219 8 250 203 141 0 chr11 15828244 15828308 -134955245 + L2 LINE L2 3200 3272 0 611 182 191 120 chr11 15829441 15829650 -134953903 - MER58A DNA MER1_type 0 224 1 240 295 74 49 chr11 15829756 15829878 -134953675 - L2 LINE L2 -6 3266 3142 313 269 92 8 chr11 15831173 15831292 -134952261 - MIR SINE MIR -71 191 63 1128 254 121 33 chr11 15831824 15832312 -134951241 + MLT1H LTR MaLR 7 537 -12 645 233 56 70 chr11 15832377 15832592 -134950961 - MIR SINE MIR -11 251 40 374 263 119 8 chr11 15832816 15832934 -134950619 - MIR SINE MIR -108 154 24 263 292 53 26 chr11 15833041 15833154 -134950399 - L2 LINE L2 -19 3253 3138 644 216 172 30 chr11 15833395 15833691 -134949862 + L1ME4a LINE L1 5485 5822 -299 359 250 118 64 chr11 15833706 15833910 -134949643 + L1ME4a LINE L1 5859 6073 -48 24 0 0 0 chr11 15833981 15834005 -134949548 + AT_rich Low_complexity Low_complexity 1 24 0 434 308 98 13 chr11 15834233 15834457 -134949096 + MIR SINE MIR 20 262 0 565 312 7 7 chr11 15834845 15834999 -134948554 - MER117 DNA MER1_type -43 154 1 225 299 102 48 chr11 15835142 15835329 -134948224 + MER117 DNA MER1_type 1 197 0 243 200 0 0 chr11 15835657 15835702 -134947851 + L2 LINE L2 3265 3309 -4 203 341 35 12 chr11 15836374 15836459 -134947094 - L3 LINE CR1 -3 1574 1488 237 355 76 42 chr11 15836615 15836877 -134946676 - L3 LINE CR1 -222 1355 1085 207 211 0 0 chr11 15837321 15837359 -134946194 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 181 200 200 40 chr11 15837372 15837422 -134946131 - L2 LINE L2 -60 3212 3155 13725 26 3 0 chr11 15838563 15840852 -134942701 - L1PA4 LINE L1 0 6155 3862 476 262 0 34 chr11 15841153 15841302 -134942251 + L2 LINE L2 2386 2529 -785 742 295 30 13 chr11 15842115 15842420 -134941133 + L1ME3A LINE L1 5653 5962 -208 409 295 84 59 chr11 15842658 15842721 -134940832 + MLT1I LTR MaLR 80 140 -269 402 21 0 0 chr11 15842721 15842768 -134940785 + (TG)n Simple_repeat Simple_repeat 2 48 0 409 295 84 59 chr11 15842768 15843026 -134940527 + MLT1I LTR MaLR 140 409 0 218 307 27 0 chr11 15844349 15844424 -134939129 + CT-rich Low_complexity Low_complexity 3 79 0 184 155 17 17 chr11 15845270 15845328 -134938225 + (TCTCTG)n Simple_repeat Simple_repeat 3 60 0 483 230 69 141 chr11 15845350 15845565 -134937988 + L3 LINE CR1 799 1028 -549 968 245 32 12 chr11 15845565 15845818 -134937735 - MIR SINE MIR 0 262 5 483 230 69 141 chr11 15845818 15846107 -134937446 + L3 LINE CR1 1028 1267 -310 440 234 69 21 chr11 15846432 15846577 -134936976 - L1ME4a LINE L1 -15 6106 5955 337 315 124 42 chr11 15846916 15847326 -134936227 - L2 LINE L2 0 3272 2829 1439 221 25 34 chr11 15847329 15847682 -134935871 + L1ME3 LINE L1 5813 6162 0 242 286 0 0 chr11 15847713 15847769 -134935784 + MER5C DNA MER1_type 6 61 -263 190 272 54 54 chr11 15847980 15848016 -134935537 - MIR SINE MIR -122 140 105 1684 202 48 22 chr11 15848016 15848372 -134935181 + MLT1A1 LTR MaLR 1 365 0 190 272 54 54 chr11 15848372 15848427 -134935126 - MIR SINE MIR -156 106 49 348 309 45 28 chr11 15848571 15848749 -134934804 - MIR SINE MIR -1 261 81 260 291 69 80 chr11 15849300 15849475 -134934078 + MIR SINE MIR 23 195 -67 438 20 0 0 chr11 15849639 15849690 -134933863 + (TG)n Simple_repeat Simple_repeat 2 52 0 378 340 72 26 chr11 15851208 15851552 -134932001 - L2 LINE L2 -182 3090 2734 257 261 96 17 chr11 15851592 15851707 -134931846 - L1ME4a LINE L1 -23 6098 5975 205 294 0 15 chr11 15851776 15851844 -134931709 + (CA)n Simple_repeat Simple_repeat 2 68 0 1237 180 0 5 chr11 15851844 15852055 -134931498 + MER2 DNA MER2_type 1 210 -135 22 70 0 0 chr11 15852056 15852099 -134931454 + AT_rich Low_complexity Low_complexity 1 43 0 605 278 81 56 chr11 15852222 15852456 -134931097 - L1P4 LINE L1 -297 5824 5591 214 198 57 113 chr11 15852463 15852569 -134930984 - L2 LINE L2 -569 2745 2646 1827 104 43 43 chr11 15852806 15853135 -134930418 - AluY SINE Alu 0 329 1 254 305 84 0 chr11 15854149 15854244 -134929309 - L2 LINE L2 -16 3256 3154 210 315 50 120 chr11 15855691 15855891 -134927662 - L2 LINE L2 -81 3191 3006 979 219 38 0 chr11 15855892 15856102 -134927451 - MER58A DNA MER1_type -1 223 6 702 260 52 16 chr11 15856196 15856388 -134927165 - MIR SINE MIR -59 203 5 352 301 24 32 chr11 15857702 15857825 -134925728 - MIR SINE MIR -66 142 21 701 261 10 35 chr11 15858430 15858629 -134924924 - MER63A DNA MER1_type -16 194 1 429 319 33 14 chr11 15858629 15858808 -134924745 - MIR SINE MIR -64 144 4 318 354 20 14 chr11 15858909 15859056 -134924497 - MIR SINE MIR -45 217 70 288 319 50 50 chr11 15859803 15859963 -134923590 + MIR SINE MIR 62 221 -41 21 0 0 0 chr11 15860302 15860323 -134923230 + AT_rich Low_complexity Low_complexity 1 21 0 191 349 0 0 chr11 15860654 15860717 -134922836 + MIR SINE MIR 190 252 -10 312 293 103 32 chr11 15861640 15861825 -134921728 + MIR3 SINE MIR 3 191 -69 2520 61 0 23 chr11 15862958 15863268 -134920285 + AluY SINE Alu 1 303 -8 321 203 14 14 chr11 15864137 15864206 -134919347 - MIR SINE MIR -73 135 67 775 252 58 19 chr11 15864207 15864413 -134919140 + MIR SINE MIR 3 216 -46 198 103 0 0 chr11 15864462 15864491 -134919062 + (TCC)n Simple_repeat Simple_repeat 2 30 0 264 255 235 73 chr11 15865083 15865287 -134918266 + L3 LINE CR1 1328 1564 -13 319 278 183 6 chr11 15865567 15865736 -134917817 + MIR SINE MIR 21 219 -43 295 228 76 0 chr11 15866194 15866273 -134917280 + MIR SINE MIR 101 185 -77 21 57 0 0 chr11 15866383 15866418 -134917135 + AT_rich Low_complexity Low_complexity 1 35 0 554 224 0 83 chr11 15966600 15966805 -134816748 + L1MA6 LINE L1 2789 2976 -3170 * 1797 136 9 19 chr11 15966800 15967116 -134816437 + L1MA5 LINE L1 5863 6175 -125 901 170 0 0 chr11 15967116 15967251 -134816302 + AluSx SINE Alu 1 135 -177 2501 89 0 3 chr11 15967252 15967566 -134815987 + AluSq SINE Alu 1 313 0 23 0 0 0 chr11 15967566 15967589 -134815964 + AT_rich Low_complexity Low_complexity 1 23 0 800 176 39 39 chr11 15967899 15968052 -134815501 + AluSx SINE Alu 139 291 -21 818 135 7 0 chr11 15968054 15968195 -134815358 + L1MA5 LINE L1 6159 6300 0 11327 177 27 39 chr11 15968214 15968760 -134814793 + L1MA6 LINE L1 2963 3514 -2786 2398 97 0 3 chr11 15968760 15969071 -134814482 + AluSx SINE Alu 1 310 -2 11327 177 27 39 chr11 15969071 15969694 -134813859 + L1MA6 LINE L1 3514 4143 -2157 246 32 0 0 chr11 15969694 15969725 -134813828 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 11327 177 27 39 chr11 15969725 15971672 -134811881 + L1MA6 LINE L1 4143 6064 -236 312 262 29 0 chr11 15971728 15971831 -134811722 + L1M4 LINE L1 2880 2985 -3161 404 222 163 13 chr11 15972041 15972194 -134811359 + MER5B DNA MER1_type 1 176 -2 180 0 0 0 chr11 15972763 15972783 -134810770 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 789 146 0 23 chr11 15972787 15972917 -134810636 - FLAM_C SINE Alu -6 127 1 321 297 58 14 chr11 15972919 15973057 -134810496 - LTR67 LTR ERVL -40 517 374 361 304 31 70 chr11 15973447 15973674 -134809879 + L2 LINE L2 2443 2660 -654 198 71 0 0 chr11 15973849 15973877 -134809676 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 270 262 19 68 chr11 15974361 15974464 -134809089 + L2 LINE L2 2932 3029 -243 333 284 61 7 chr11 15974936 15975084 -134808469 - L1ME4a LINE L1 -1 6120 5965 506 313 17 0 chr11 15975190 15975366 -134808187 - L1ME4a LINE L1 -347 5774 5596 1673 275 10 5 chr11 15976276 15976672 -134806881 + LTR16C LTR ERVL 68 465 -26 228 399 42 0 chr11 15979662 15979830 -134803723 + MIR SINE MIR 77 251 -11 875 323 43 37 chr11 15980683 15981251 -134802302 + L2 LINE L2 2708 3282 -31 2787 10 0 3 chr11 15981741 15982047 -134801506 - AluY SINE Alu -6 305 1 308 284 10 39 chr11 15982711 15982813 -134800740 + L1ME LINE L1 5481 5579 -542 327 292 62 11 chr11 15982832 15983010 -134800543 - L1P5 LINE L1 -700 5451 5265 361 278 40 88 chr11 15983566 15984113 -134799440 - L1ME4a LINE L1 -1440 4706 4186 2451 60 13 0 chr11 15984246 15984548 -134799005 - AluY SINE Alu -5 306 1 437 123 0 49 chr11 15984736 15984817 -134798736 - AluSq/x SINE Alu -180 133 57 1287 162 0 0 chr11 15984817 15985008 -134798545 - AluSx SINE Alu -121 191 1 2878 248 61 31 chr11 15985116 15985326 -134798227 - L1M2 LINE L1 -4171 2936 2734 182 62 31 0 chr11 15985326 15985358 -134798195 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 2878 248 61 31 chr11 15985358 15986780 -134796773 - L1M2 LINE L1 -4373 2734 1292 1528 186 4 11 chr11 15986784 15987063 -134796490 - L1M2 LINE L1 -6753 277 1 395 286 55 45 chr11 15987140 15987360 -134796193 + L1ME LINE L1 5122 5343 -803 345 308 33 17 chr11 15987404 15987620 -134795933 + L1ME LINE L1 5420 5645 -525 * 348 225 81 9 chr11 15987609 15987720 -134795833 - L1MC3 LINE L1 -1757 6028 5910 323 232 109 17 chr11 15987727 15987859 -134795694 + L1ME LINE L1 5681 5823 -339 189 94 0 0 chr11 15987893 15987925 -134795628 + (A)n Simple_repeat Simple_repeat 1 32 0 26 74 0 0 chr11 15988201 15988255 -134795298 + AT_rich Low_complexity Low_complexity 1 54 0 220 267 67 44 chr11 15988262 15988352 -134795201 + MIR SINE MIR 39 130 -78 241 360 27 9 chr11 15989141 15989252 -134794301 + L3 LINE CR1 1174 1286 -291 788 316 85 36 chr11 15989331 15989875 -134793678 - L2 LINE L2 -17 3296 2729 367 302 23 0 chr11 15990026 15990155 -134793398 + L1ME LINE L1 4713 4844 -1302 251 242 98 72 chr11 15990235 15990388 -134793165 + L1ME LINE L1 5009 5165 -981 5275 171 22 23 chr11 15990391 15991855 -134791698 + L1MA7 LINE L1 4814 6287 -4 616 261 85 6 chr11 15991883 15992181 -134791372 + L1ME LINE L1 5176 5495 -667 202 268 18 18 chr11 15992181 15992237 -134791316 + GA-rich Low_complexity Low_complexity 4 59 0 284 291 131 30 chr11 15992302 15992539 -134791014 - L2 LINE L2 -338 2976 2716 446 204 0 23 chr11 15992843 15992931 -134790622 + MER81 DNA DNA 29 114 0 468 288 51 19 chr11 15992942 15993157 -134790396 + L2 LINE L2 2284 2505 -809 1508 280 138 4 chr11 15993196 15993897 -134789656 - L2 LINE L2 -78 3235 2452 427 321 24 53 chr11 15993914 15994123 -134789430 + L2 LINE L2 2550 2752 -562 297 370 11 0 chr11 15994197 15994289 -134789264 + L2 LINE L2 3180 3272 -41 708 293 4 23 chr11 15994332 15994598 -134788955 + HAL1b LINE L1 521 781 -567 315 303 48 37 chr11 15994803 15994991 -134788562 + L1ME1 LINE L1 50 239 -5880 497 267 31 69 chr11 15995766 15996126 -134787427 + L1ME1 LINE L1 890 1235 -4884 324 0 0 0 chr11 15996151 15996187 -134787366 + (CA)n Simple_repeat Simple_repeat 2 37 0 3355 233 66 18 chr11 15996221 15997928 -134785625 + L1ME1 LINE L1 1433 3181 -2948 1962 218 53 81 chr11 15997921 15999175 -134784378 + L1ME1 LINE L1 4660 5882 -265 * 258 259 50 13 chr11 15999187 15999289 -134784264 + L1ME1 LINE L1 5959 6066 -81 2179 175 3 3 chr11 15999334 15999699 -134783854 - MLT1A1 LTR MaLR 0 365 1 2471 265 32 23 chr11 15999722 16000027 -134783526 + L1ME2 LINE L1 3049 3350 -2796 2119 112 0 10 chr11 16000027 16000321 -134783232 - AluSx SINE Alu -21 291 1 2471 265 32 23 chr11 16000321 16000959 -134782594 + L1ME2 LINE L1 3350 4000 -2146 1863 257 9 61 chr11 16000954 16001639 -134781914 + L1ME2 LINE L1 5504 6152 -12 * 386 231 66 28 chr11 16001651 16001833 -134781720 + L1M4 LINE L1 2316 2504 -3642 780 216 18 18 chr11 16002138 16002309 -134781244 + FAM SINE Alu 4 174 -1 21 0 0 0 chr11 16002411 16002432 -134781121 + AT_rich Low_complexity Low_complexity 1 21 0 233 298 126 0 chr11 16002448 16002646 -134780907 + L1ME LINE L1 5693 5915 -206 206 323 83 0 chr11 16003018 16003114 -134780439 + L3 LINE CR1 1463 1566 -11 2136 38 0 0 chr11 16003438 16003699 -134779854 + L1PA5 LINE L1 5894 6154 0 342 0 0 0 chr11 16003715 16003753 -134779800 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 2383 79 0 13 chr11 16003844 16004147 -134779406 + AluSq SINE Alu 1 299 -14 536 256 29 7 chr11 16005441 16005578 -134777975 - MIR SINE MIR -109 153 14 603 274 91 20 chr11 16005918 16006115 -134777438 + L2 LINE L2 2766 2976 -338 198 326 144 15 chr11 16006087 16006219 -134777334 + L2 LINE L2 3165 3313 0 * 410 281 177 12 chr11 16006258 16006422 -134777131 + L3 LINE CR1 1315 1505 -72 381 101 32 9 chr11 16006436 16006513 -134777040 + L1P4 LINE L1 5651 5726 -429 287 277 24 12 chr11 16006971 16007054 -134776499 + L2 LINE L2 3226 3309 -4 5164 126 40 9 chr11 16007212 16008185 -134775368 + L1PA16 LINE L1 5167 6166 0 261 326 54 47 chr11 16009203 16009332 -134774221 - L2 LINE L2 -208 3064 2935 748 319 55 42 chr11 16009364 16009614 -134773939 + MLT1K LTR MaLR 27 285 -303 441 50 0 0 chr11 16009614 16009674 -134773879 + (TG)n Simple_repeat Simple_repeat 1 60 0 748 319 55 42 chr11 16009674 16009808 -134773745 + MLT1K LTR MaLR 285 416 -172 254 278 67 0 chr11 16010039 16010129 -134773424 - MIR SINE MIR -58 150 55 24 0 0 0 chr11 16010475 16010499 -134773054 + AT_rich Low_complexity Low_complexity 1 24 0 205 349 87 24 chr11 16011374 16011500 -134772053 - L2 LINE L2 0 3272 3139 801 290 49 22 chr11 16011551 16011964 -134771589 + LTR33 LTR ERVL 30 500 -21 184 241 121 17 chr11 16012693 16012751 -134770802 + MIR SINE MIR 91 154 -108 753 167 0 0 chr11 16012757 16012871 -134770682 + Tigger4(Zombi) DNA MER2_type 7 120 -2611 * 1033 129 48 71 chr11 16012870 16013050 -134770503 + Tigger4(Zombi) DNA MER2_type 2523 2699 -32 1965 113 45 10 chr11 16013050 16013341 -134770212 - AluSx SINE Alu -7 305 5 1033 129 48 71 chr11 16013341 16013370 -134770183 + Tigger4(Zombi) DNA MER2_type 2699 2727 -4 1377 230 65 17 chr11 16013386 16013738 -134769815 - MLT1A2 LTR MaLR -1 373 5 1004 185 25 20 chr11 16013795 16013995 -134769558 - MLT1A1 LTR MaLR -164 201 1 348 301 0 62 chr11 16014092 16014205 -134769348 - L1 LINE L1 -2445 3701 3596 1963 136 11 3 chr11 16014374 16014661 -134768892 - AluSx SINE Alu -23 289 1 2830 150 20 24 chr11 16014662 16014871 -134768682 - L1MC3 LINE L1 -8 8195 7987 1305 194 38 115 chr11 16014871 16015262 -134768291 + MLT1A1 LTR MaLR 1 361 -4 2830 150 20 24 chr11 16015262 16015606 -134767947 - L1MC3 LINE L1 -216 7987 7644 * 5258 183 22 10 chr11 16015588 16016624 -134766929 - L1MC3 LINE L1 -1420 6783 5735 3826 213 55 36 chr11 16016625 16016764 -134766789 - L1MC3 LINE L1 -4740 1824 1689 2067 142 7 3 chr11 16016764 16017073 -134766480 - AluSx SINE Alu 0 312 3 3826 213 55 36 chr11 16017073 16018713 -134764840 - L1MC3 LINE L1 -4875 1689 1 874 287 131 55 chr11 16018819 16019776 -134763777 - L1 LINE L1 -2803 3343 2315 26 30 0 0 chr11 16019890 16019923 -134763630 + AT_rich Low_complexity Low_complexity 1 33 0 300 319 13 7 chr11 16020491 16020629 -134762924 - HAL1b LINE L1 -809 1611 397 489 275 93 0 chr11 16020692 16020885 -134762668 - HAL1 LINE L1 -1 2506 2296 * 722 285 71 40 chr11 16020878 16021232 -134762321 - HAL1 LINE L1 -2141 366 2 414 306 61 45 chr11 16021385 16021630 -134761923 - HAL1 LINE L1 -1229 1278 1030 1432 158 24 34 chr11 16021638 16021929 -134761624 - AluJo SINE Alu -19 293 6 1199 197 47 101 chr11 16022490 16022875 -134760678 + MLT1A1 LTR MaLR 1 364 -1 4149 161 15 3 chr11 16023232 16023944 -134759609 + L1MC1 LINE L1 5596 6316 -17 810 124 22 22 chr11 16024508 16024686 -134758867 + GA-rich Low_complexity Low_complexity 1 178 0 234 225 0 0 chr11 16024686 16024726 -134758827 + polypurine Low_complexity Low_complexity 2 41 0 291 320 84 25 chr11 16026104 16026306 -134757247 - MIR SINE MIR -37 225 17 4823 108 90 61 chr11 16026363 16027747 -134755806 + pTR5 LTR ERV1 742 2295 -143 180 319 28 28 chr11 16028240 16028312 -134755241 + MIR SINE MIR 178 249 -13 372 382 164 0 chr11 16028322 16028542 -134755011 - L3 LINE CR1 -1039 538 283 328 303 42 8 chr11 16029892 16030011 -134753542 + MIR3 SINE MIR 85 207 -1 186 314 39 0 chr11 16030189 16030240 -134753313 + L2 LINE L2 3250 3302 -11 210 91 0 0 chr11 16031329 16031362 -134752191 + (T)n Simple_repeat Simple_repeat 1 33 0 201 88 0 59 chr11 16032135 16032169 -134751384 + (TTCTCC)n Simple_repeat Simple_repeat 4 35 0 272 293 49 57 chr11 16032437 16032560 -134750993 - MIR SINE MIR -50 212 91 226 231 22 22 chr11 16032844 16032935 -134750618 + CT-rich Low_complexity Low_complexity 3 93 0 254 343 113 31 chr11 16032937 16033229 -134750324 - L2 LINE L2 -1 3271 2956 2343 61 0 3 chr11 16033266 16033559 -134749994 - AluY SINE Alu -19 292 1 1684 78 13 26 chr11 16033995 16034227 -134749326 + MER30 DNA MER1_type 2 230 0 543 299 149 0 chr11 16034401 16034622 -134748931 + MIR SINE MIR 3 256 -6 228 227 34 0 chr11 16034627 16034715 -134748838 + (TAG)n Simple_repeat Simple_repeat 1 91 0 216 274 0 0 chr11 16034739 16034790 -134748763 + (TAG)n Simple_repeat Simple_repeat 3 53 0 235 321 28 57 chr11 16035121 16035227 -134748326 + L2 LINE L2 3167 3269 -3 1580 182 179 3 chr11 16035865 16036195 -134747358 + MSTD LTR MaLR 1 388 -8 271 308 20 55 chr11 16036692 16036838 -134746715 - MIR3 SINE MIR -65 143 3 231 36 0 0 chr11 16037039 16037067 -134746486 + (TG)n Simple_repeat Simple_repeat 2 29 0 185 183 17 0 chr11 16037069 16037129 -134746424 + (TA)n Simple_repeat Simple_repeat 1 61 0 21 89 0 0 chr11 16037142 16037198 -134746355 + AT_rich Low_complexity Low_complexity 1 56 0 294 365 47 0 chr11 16037241 16037389 -134746164 + MIR SINE MIR 46 200 -62 249 301 83 15 chr11 16037390 16037523 -134746030 - MLT1L LTR MaLR 0 615 474 327 266 73 94 chr11 16037579 16037771 -134745782 - MLT1J LTR MaLR -216 295 108 2370 113 132 5 chr11 16038595 16038975 -134744578 + MSTA LTR MaLR 1 428 0 230 299 46 11 chr11 16040567 16040654 -134742899 - MIR3 SINE MIR -49 159 70 401 216 144 0 chr11 16041155 16041266 -134742287 - MIR SINE MIR -69 193 67 372 273 34 68 chr11 16041614 16041752 -134741801 + MIR SINE MIR 77 209 -53 2024 123 7 0 chr11 16041752 16042045 -134741508 + AluSx SINE Alu 1 295 -17 372 273 34 68 chr11 16042045 16042082 -134741471 + MIR SINE MIR 209 246 -16 389 263 61 18 chr11 16043066 16043180 -134740373 - MIR SINE MIR -112 150 32 617 224 26 13 chr11 16043489 16043641 -134739912 - MIR SINE MIR -31 231 78 1864 81 19 99 chr11 16043731 16044054 -134739499 - AluSc SINE Alu -12 297 1 224 364 67 51 chr11 16044525 16044778 -134738775 + L2 LINE L2 2709 2965 -349 282 247 194 0 chr11 16045038 16045131 -134738422 + L2 LINE L2 3203 3313 0 317 343 37 9 chr11 16045820 16045928 -134737625 + MIR3 SINE MIR 45 155 -53 702 315 81 0 chr11 16046035 16046270 -134737283 + MIR SINE MIR 9 262 0 1459 243 102 15 chr11 16046392 16046870 -134736683 - MLT2B1 LTR ERVL 0 520 1 330 132 0 0 chr11 16046982 16047035 -134736518 + (T)n Simple_repeat Simple_repeat 1 53 0 1935 129 0 3 chr11 16047082 16047400 -134736153 + AluSx SINE Alu 1 317 0 489 255 27 40 chr11 16047446 16047595 -134735958 - MIR SINE MIR -110 152 6 226 215 25 51 chr11 16048234 16048313 -134735240 + LTR67 LTR ERVL 481 557 0 614 282 110 5 chr11 16048703 16048912 -134734641 - L2 LINE L2 -541 2773 2543 184 360 48 27 chr11 16050499 16050646 -134732907 - MIR3 SINE MIR -23 185 36 852 196 18 18 chr11 16051014 16051177 -134732376 - FRAM SINE Alu 0 166 4 351 179 64 0 chr11 16051511 16051589 -134731964 + L2 LINE L2 3190 3272 0 246 32 0 0 chr11 16051595 16051626 -134731927 + (CA)n Simple_repeat Simple_repeat 2 32 0 505 217 40 33 chr11 16051982 16052134 -134731419 + LTR67 LTR ERVL 405 557 0 21 0 0 0 chr11 16052764 16052785 -134730768 + AT_rich Low_complexity Low_complexity 1 21 0 381 302 165 19 chr11 16053078 16053290 -134730263 - MIR SINE MIR 0 262 20 274 274 11 96 chr11 16053267 16053406 -134730147 + MIR3 SINE MIR 48 176 -32 * 384 252 38 114 chr11 16053796 16053865 -134729688 - MIR SINE MIR -47 215 142 2170 94 3 0 chr11 16053865 16054163 -134729390 + AluY SINE Alu 1 299 -12 384 252 38 114 chr11 16054163 16054303 -134729250 - MIR SINE MIR -120 142 22 666 224 18 30 chr11 16054571 16054736 -134728817 - MIR SINE MIR -13 249 87 320 273 207 0 chr11 16054831 16054952 -134728601 + MIR SINE MIR 47 192 -70 307 296 12 0 chr11 16055947 16056028 -134727525 - L2 LINE L2 -7 3265 3184 798 225 67 14 chr11 16056065 16056311 -134727242 + L2 LINE L2 2670 2959 -355 339 303 49 31 chr11 16057732 16057894 -134725659 + L2 LINE L2 2681 2845 -469 420 223 18 27 chr11 16057909 16058021 -134725532 + MER5B DNA MER1_type 5 115 -63 352 233 68 61 chr11 16058365 16058528 -134725025 - MLT1H LTR MaLR -328 221 58 287 274 49 59 chr11 16058570 16058672 -134724881 + MIR3 SINE MIR 85 185 -23 443 289 112 7 chr11 16059584 16059736 -134723817 - MIR3 SINE MIR -26 182 15 414 228 299 11 chr11 16059748 16059932 -134723621 - LTR16A LTR ERVL -17 433 197 181 325 38 25 chr11 16060562 16060642 -134722911 + MIR SINE MIR 27 107 -101 692 224 229 10 chr11 16060652 16061003 -134722550 - MER57B LTR ERV1 -4 399 1 201 333 48 0 chr11 16061096 16061201 -134722352 - MIR SINE MIR -31 231 122 540 0 0 0 chr11 16061470 16061530 -134722023 + (CA)n Simple_repeat Simple_repeat 2 61 0 236 315 10 140 chr11 16061764 16061964 -134721589 - L2 LINE L2 -107 3165 2992 552 284 99 25 chr11 16062051 16062252 -134721301 - MIR SINE MIR -27 235 20 355 270 93 83 chr11 16062735 16062939 -134720614 + MIR SINE MIR 51 256 -6 2046 106 41 0 chr11 16063387 16063679 -134719874 - AluSg SINE Alu -6 304 1 460 310 76 27 chr11 16064009 16064193 -134719360 + MIR SINE MIR 21 213 -49 243 277 48 36 chr11 16064304 16064387 -134719166 + MIR SINE MIR 169 252 -10 199 256 23 0 chr11 16064830 16064873 -134718680 + MIR SINE MIR 32 75 -133 387 321 82 68 chr11 16064969 16065336 -134718217 + L2 LINE L2 2901 3272 0 617 272 41 24 chr11 16066144 16066313 -134717240 + MIR SINE MIR 80 251 -11 401 294 37 9 chr11 16067575 16067684 -134715869 - MIR SINE MIR -143 119 8 252 0 0 0 chr11 16069163 16069191 -134714362 + (T)n Simple_repeat Simple_repeat 1 28 0 350 321 29 29 chr11 16069597 16069737 -134713816 - MIR SINE MIR -110 152 13 374 332 82 38 chr11 16070259 16070599 -134712954 + L2 LINE L2 2910 3264 -49 261 253 232 0 chr11 16071471 16071566 -134711987 + MIR SINE MIR 9 125 -137 764 254 0 0 chr11 16071581 16071754 -134711799 + MER45A DNA AcHobo 5 177 -1 449 259 28 21 chr11 16073244 16073387 -134710166 + MIR3 SINE MIR 2 145 -63 415 293 8 0 chr11 16073932 16074065 -134709488 - MIR SINE MIR -5 257 124 454 193 44 26 chr11 16074271 16074385 -134709168 + MER103 DNA DNA 40 155 -11 34 0 0 0 chr11 16074424 16074458 -134709095 + AT_rich Low_complexity Low_complexity 1 34 0 228 301 68 10 chr11 16074463 16074566 -134708987 - MIR SINE MIR -64 144 36 2532 143 10 14 chr11 16074772 16075185 -134708368 - MLT2D LTR ERVL 0 414 4 486 227 0 0 chr11 16075549 16075646 -134707907 + MER5A DNA MER1_type 9 105 -84 687 304 142 18 chr11 16076237 16076688 -134706865 + L2 LINE L2 2807 3313 0 278 320 64 8 chr11 16076688 16076813 -134706740 + L2 LINE L2 3112 3243 -29 1211 163 5 0 chr11 16077060 16077256 -134706297 + MER2 DNA MER2_type 13 209 -136 27 29 0 0 chr11 16077259 16077293 -134706260 + AT_rich Low_complexity Low_complexity 1 34 0 249 351 13 0 chr11 16079836 16079913 -134703640 - L2 LINE L2 -86 3186 3109 232 289 48 12 chr11 16080375 16080458 -134703095 + MIR SINE MIR 122 207 -55 219 280 167 15 chr11 16081183 16081315 -134702238 + MIR SINE MIR 41 192 -70 338 216 12 154 chr11 16081445 16081607 -134701946 + MIR SINE MIR 124 262 0 234 343 101 18 chr11 16082821 16082990 -134700563 + LTR16C LTR ERVL 299 481 -10 205 312 11 11 chr11 16083556 16083649 -134699904 + MIR SINE MIR 60 152 -110 272 276 92 18 chr11 16083810 16084004 -134699549 - MIR SINE MIR -54 208 2 233 296 49 0 chr11 16085017 16085098 -134698455 + L2 LINE L2 3187 3271 -1 286 246 86 102 chr11 16085421 16085608 -134697945 + MER117 DNA MER1_type 9 192 -5 350 300 63 36 chr11 16085640 16085863 -134697690 + L2 LINE L2 2617 2845 -469 343 343 41 14 chr11 16086106 16086252 -134697301 + L2 LINE L2 3123 3272 0 450 281 163 0 chr11 16087198 16087351 -134696202 - MER5A DNA MER1_type -1 188 11 251 290 20 10 chr11 16087571 16087671 -134695882 - Charlie2a DNA MER1_type 0 2862 2762 292 210 200 40 chr11 16087749 16087849 -134695704 + L2 LINE L2 3189 3304 -9 538 196 30 89 chr11 16087849 16088017 -134695536 - Charlie2a DNA MER1_type -1978 884 727 325 306 11 59 chr11 16089659 16089845 -134693708 - MIR3 SINE MIR -13 195 19 893 245 55 4 chr11 16090648 16090885 -134692668 - MIR SINE MIR 0 262 14 450 315 12 12 chr11 16090944 16091109 -134692444 - MER5A DNA MER1_type -2 187 23 568 185 65 0 chr11 16091312 16091420 -134692133 + MER94 DNA DNA 3 117 -17 1097 272 44 21 chr11 16091497 16091835 -134691718 + LTR16C LTR ERVL 126 471 -20 299 229 133 0 chr11 16091848 16091931 -134691622 + MIR SINE MIR 62 155 -107 189 171 0 0 chr11 16093323 16093358 -134690195 + (TTG)n Simple_repeat Simple_repeat 2 36 0 1405 240 49 49 chr11 16093450 16094029 -134689524 - MLT1D LTR MaLR 0 626 1 236 322 39 15 chr11 16094137 16094342 -134689211 - L1ME3A LINE L1 -230 5940 5731 1191 304 53 15 chr11 16094969 16095646 -134687907 + L2 LINE L2 2511 3299 -14 459 252 150 0 chr11 16095690 16095817 -134687736 + MER5B DNA MER1_type 1 146 -32 227 328 33 25 chr11 16095864 16095986 -134687567 + MLT1K LTR MaLR 227 349 -239 373 173 40 40 chr11 16096170 16096245 -134687308 + MLT1K LTR MaLR 513 587 -1 180 0 0 0 chr11 16097816 16097836 -134685717 + (GGGAA)n Simple_repeat Simple_repeat 3 22 0 307 301 133 0 chr11 16098644 16098757 -134684796 + MLT1H LTR MaLR 404 531 -18 2175 112 3 13 chr11 16099824 16100128 -134683425 - AluSx SINE Alu -11 301 1 550 308 35 13 chr11 16100198 16100425 -134683128 + MIR SINE MIR 20 251 -11 307 365 86 27 chr11 16100772 16100994 -134682559 - MIR SINE MIR -6 256 22 801 264 67 103 chr11 16101087 16101313 -134682240 + MLT1J LTR MaLR 9 242 -269 1758 75 0 0 chr11 16101313 16101525 -134682028 - AluSq SINE Alu -10 303 92 801 264 67 103 chr11 16101525 16101820 -134681733 + MLT1J LTR MaLR 242 511 0 606 293 11 11 chr11 16101830 16102021 -134681532 - MIR SINE MIR -70 192 2 398 271 222 10 chr11 16103075 16103278 -134680275 + MIR SINE MIR 2 247 -15 272 298 0 60 chr11 16103491 16103575 -134679978 + MIR SINE MIR 21 99 -163 2169 137 6 3 chr11 16103639 16103960 -134679593 + MER7A DNA MER2_type 22 341 -5 899 209 47 21 chr11 16104129 16104320 -134679233 - MLT1H LTR MaLR -18 531 336 205 241 19 0 chr11 16104770 16104824 -134678729 + MIR3 SINE MIR 153 207 -1 464 278 46 33 chr11 16104881 16105032 -134678521 + L3 LINE CR1 1328 1480 -97 332 59 20 0 chr11 16105184 16105235 -134678318 + (TA)n Simple_repeat Simple_repeat 2 53 0 282 294 0 0 chr11 16105577 16105662 -134677891 + MIR SINE MIR 177 261 -1 1590 164 84 4 chr11 16106515 16106625 -134676928 + AluJo SINE Alu 1 101 -211 1010 40 40 7 chr11 16106625 16106775 -134676778 + (GAAA)n Simple_repeat Simple_repeat 2 156 0 1590 164 84 4 chr11 16106775 16106938 -134676615 + AluJo SINE Alu 101 296 -16 423 263 119 0 chr11 16107610 16107728 -134675825 + MIR SINE MIR 101 232 -30 183 80 0 0 chr11 16107737 16107762 -134675791 + (TAA)n Simple_repeat Simple_repeat 1 25 0 275 270 33 79 chr11 16107770 16107922 -134675631 + L2 LINE L2 3122 3266 -6 494 286 83 56 chr11 16109151 16109403 -134674150 - MIR SINE MIR -3 259 1 204 211 197 0 chr11 16109456 16109532 -134674021 + MIR SINE MIR 56 146 -116 219 265 0 121 chr11 16109606 16109689 -134673864 + L2 LINE L2 3168 3240 -32 195 315 77 33 chr11 16110736 16110917 -134672636 + MIR SINE MIR 72 260 -2 243 296 102 85 chr11 16111128 16111530 -134672023 + L2 LINE L2 2826 3234 -38 464 263 11 0 chr11 16111727 16111822 -134671731 + MER69 DNA AcHobo 1 96 -1130 873 163 0 0 chr11 16111827 16111962 -134671591 - AluJb SINE Alu -23 289 155 350 253 22 0 chr11 16111964 16112055 -134671498 + MER69 DNA AcHobo 2434 2526 0 188 352 0 0 chr11 16112070 16112124 -134671429 + MER5A DNA MER1_type 135 188 -1 377 233 134 81 chr11 16112129 16112301 -134671252 + MER5A DNA MER1_type 9 189 0 226 308 149 51 chr11 16112319 16112514 -134671039 - L2 LINE L2 -193 3079 2866 310 287 10 0 chr11 16113366 16113467 -134670086 - MIR SINE MIR -113 149 48 322 271 49 8 chr11 16113616 16113738 -134669815 - MIR3 SINE MIR 0 208 82 332 279 0 10 chr11 16113961 16114065 -134669488 + GA-rich Low_complexity Low_complexity 4 106 0 463 116 12 12 chr11 16114065 16114151 -134669402 + (GGAA)n Simple_repeat Simple_repeat 2 87 0 828 261 9 5 chr11 16114151 16114373 -134669180 - MIR SINE MIR -9 253 31 274 305 48 72 chr11 16114606 16114816 -134668737 + MIR3 SINE MIR 19 221 -41 580 264 5 43 chr11 16115070 16115278 -134668275 - L2 LINE L2 0 3313 3114 227 341 52 2 chr11 16115577 16115712 -134667841 - MIR SINE MIR -63 145 14 308 325 68 25 chr11 16115748 16115911 -134667642 + L2 LINE L2 2823 2992 -280 183 80 0 0 chr11 16115963 16115988 -134667565 + (TTA)n Simple_repeat Simple_repeat 1 25 0 1847 155 0 4 chr11 16115995 16116273 -134667280 - AluSx SINE Alu -35 277 1 559 258 107 25 chr11 16116273 16116432 -134667121 - L1ME1 LINE L1 -10 6156 5985 616 203 95 86 chr11 16116480 16116795 -134666758 + L2 LINE L2 2996 3313 0 526 302 0 47 chr11 16116982 16117194 -134666359 - MIR SINE MIR -23 239 38 274 313 30 8 chr11 16118074 16118205 -134665348 - MIR SINE MIR -122 140 7 403 179 53 21 chr11 16118627 16118722 -134664831 - MIR SINE MIR -68 140 43 22 0 0 0 chr11 16119261 16119283 -134664270 + AT_rich Low_complexity Low_complexity 1 22 0 276 100 0 0 chr11 16119437 16119477 -134664076 + (GA)n Simple_repeat Simple_repeat 2 41 0 213 238 0 0 chr11 16119823 16119924 -134663629 + GA-rich Low_complexity Low_complexity 2 102 0 216 0 0 0 chr11 16120127 16120151 -134663402 + (CA)n Simple_repeat Simple_repeat 2 25 0 225 65 0 0 chr11 16120236 16120267 -134663286 + (CA)n Simple_repeat Simple_repeat 2 32 0 38 0 0 0 chr11 16120495 16120533 -134663020 + AT_rich Low_complexity Low_complexity 1 38 0 1797 141 53 3 chr11 16120539 16120823 -134662730 + AluJb SINE Alu 1 298 -14 511 358 4 35 chr11 16121021 16121253 -134662300 - MIR SINE MIR -10 252 28 440 317 100 6 chr11 16121263 16121443 -134662110 + MIR SINE MIR 52 248 -14 346 231 157 8 chr11 16121561 16121682 -134661871 + MIR SINE MIR 117 255 -7 264 274 99 9 chr11 16122180 16122376 -134661177 + MIR3 SINE MIR 9 221 -41 * 544 270 117 6 chr11 16122364 16122527 -134661026 + MIR SINE MIR 5 185 -77 234 270 44 88 chr11 16122701 16122838 -134660715 - L2 LINE L2 -235 3037 2907 2119 149 135 50 chr11 16122846 16123328 -134660225 - MER44D DNA MER2_type 0 605 28 920 189 77 36 chr11 16123328 16123576 -134659977 - MSTD LTR MaLR -138 258 1 468 266 68 23 chr11 16123931 16124108 -134659445 - MIR SINE MIR -72 190 6 384 316 59 20 chr11 16125249 16125401 -134658152 - MIR3 SINE MIR -14 194 37 1070 130 73 53 chr11 16126193 16126439 -134657114 + ORSL DNA AcHobo 12 262 -13 2344 206 106 17 chr11 16126939 16127073 -134656480 + L1ME3A LINE L1 5509 5630 -540 355 218 26 0 chr11 16127073 16127151 -134656402 + MER116 DNA Mariner 1 80 0 2344 206 106 17 chr11 16127151 16127619 -134655934 + L1ME3A LINE L1 5630 6165 -5 257 356 17 39 chr11 16127763 16127943 -134655610 - MIR SINE MIR -66 196 21 510 297 34 0 chr11 16128922 16129070 -134654483 + MIR3 SINE MIR 41 193 -15 225 328 228 18 chr11 16129630 16129972 -134653581 + L2 LINE L2 2564 2977 -337 332 259 98 9 chr11 16129991 16130103 -134653450 + L2 LINE L2 3192 3313 0 222 235 0 59 chr11 16130367 16130435 -134653118 + L2 LINE L2 3208 3271 -1 187 400 49 27 chr11 16130478 16130663 -134652890 + L2 LINE L2 2979 3167 -105 202 216 120 96 chr11 16131380 16131505 -134652048 + MIR SINE MIR 1 129 -79 307 265 0 48 chr11 16132013 16132096 -134651457 - L2 LINE L2 0 3313 3235 356 333 103 12 chr11 16132345 16132510 -134651043 + L3 LINE CR1 1316 1495 -82 456 320 39 26 chr11 16133032 16133185 -134650368 - L2 LINE L2 -2 3270 3116 1825 149 33 0 chr11 16133656 16133968 -134649585 + AluSx SINE Alu 1 321 0 269 254 0 0 chr11 16135121 16135180 -134648373 + MLT1I LTR MaLR 344 402 -7 210 250 0 0 chr11 16135181 16135221 -134648332 - L2 LINE L2 -23 3249 3210 681 281 201 16 chr11 16135641 16136029 -134647524 + L2 LINE L2 2233 2692 -622 263 299 122 41 chr11 16136209 16136430 -134647123 + L2 LINE L2 2952 3190 -123 2363 92 3 0 chr11 16136735 16137039 -134646514 + AluSp SINE Alu 3 307 -6 726 271 89 14 chr11 16137049 16137263 -134646290 - MIR SINE MIR -30 232 3 437 282 20 34 chr11 16137408 16137557 -134645996 + MIR3 SINE MIR 28 174 -34 1616 138 88 77 chr11 16140152 16140515 -134643038 + MLT1B LTR MaLR 5 371 -19 230 328 0 16 chr11 16140564 16140628 -134642925 + L2 LINE L2 3205 3267 -5 273 337 0 0 chr11 16141980 16142078 -134641475 + MER117 DNA MER1_type 67 164 -33 294 301 88 22 chr11 16142674 16142810 -134640743 - MIR SINE MIR -9 253 109 1217 280 47 39 chr11 16143104 16143726 -134639827 + L1ME1 LINE L1 909 1535 -5008 * 9026 252 57 21 chr11 16143722 16147464 -134636089 + L1ME1 LINE L1 1824 5700 -840 2904 244 69 10 chr11 16147513 16148337 -134635216 + L1ME1 LINE L1 5687 6559 -1 6735 245 49 30 chr11 16148337 16150870 -134632683 + L1ME2 LINE L1 3013 5591 -573 1210 226 58 16 chr11 16150868 16151177 -134632376 + L1ME2 LINE L1 5827 6148 -16 * 2580 124 13 5 chr11 16151798 16152170 -134631383 + THE1C LTR MaLR 1 375 0 219 345 56 65 chr11 16152349 16152581 -134630972 - MIR SINE MIR -23 239 10 303 308 189 16 chr11 16152672 16152857 -134630696 - MIR SINE MIR -10 252 36 2333 174 52 12 chr11 16153096 16153312 -134630241 - MSTB LTR MaLR -2 424 218 287 0 0 50 chr11 16153312 16153352 -134630201 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 4991 65 35 0 chr11 16153352 16153979 -134629574 - SVA Other Other -23 1363 715 2333 174 52 12 chr11 16153979 16154168 -134629385 - MSTB LTR MaLR -207 219 2 1907 135 24 0 chr11 16154342 16154631 -134628922 - AluSg SINE Alu -14 296 1 653 284 100 22 chr11 16154769 16155040 -134628513 + L2 LINE L2 3020 3311 -2 740 297 39 3 chr11 16155213 16155618 -134627935 + LTR33 LTR ERVL 34 475 -46 656 191 0 50 chr11 16156387 16156528 -134627025 + MIR SINE MIR 40 173 -89 899 291 95 7 chr11 16156569 16156875 -134626678 + MLT1I LTR MaLR 77 409 0 358 225 45 22 chr11 16156875 16156964 -134626589 + MIR SINE MIR 171 261 -1 2588 132 57 21 chr11 16156997 16157415 -134626138 + Tigger2a DNA MER2_type 2 434 0 1100 323 80 30 chr11 16158566 16158697 -134624856 + ERVL LTR ERVL 4628 4751 -1013 1659 229 90 13 chr11 16158697 16159164 -134624389 - MLT1D LTR MaLR 0 505 3 1100 323 80 30 chr11 16159164 16159695 -134623858 + ERVL LTR ERVL 4751 5323 -441 773 281 98 40 chr11 16159808 16160207 -134623346 + LTR16A LTR ERVL 29 450 0 2328 103 3 0 chr11 16161024 16161334 -134622219 + AluSx SINE Alu 1 311 -1 627 306 49 20 chr11 16161741 16161986 -134621567 - MIR SINE MIR -3 259 8 479 248 23 47 chr11 16162487 16162616 -134620937 - MIR SINE MIR -58 204 79 314 299 102 19 chr11 16162784 16162941 -134620612 - MIR SINE MIR -14 248 79 285 299 52 26 chr11 16163107 16163261 -134620292 - L2 LINE L2 -217 3055 2898 348 330 82 74 chr11 16163795 16164343 -134619210 - L2 LINE L2 -10 3262 2709 532 221 0 0 chr11 16164506 16164610 -134618943 - MIR SINE MIR -2 260 157 188 250 0 0 chr11 16164639 16164675 -134618878 - MIR SINE MIR -195 67 32 475 265 215 45 chr11 16164717 16164940 -134618613 - MIR SINE MIR 0 262 2 215 349 0 15 chr11 16165639 16165771 -134617782 + (CA)n Simple_repeat Simple_repeat 1 130 0 * 285 302 11 28 chr11 16165695 16165874 -134617679 + (CATATA)n Simple_repeat Simple_repeat 2 177 0 471 270 31 25 chr11 16165975 16166134 -134617419 + L3b LINE CR1 1244 1403 -180 22 80 0 0 chr11 16166239 16166289 -134617264 + AT_rich Low_complexity Low_complexity 1 50 0 217 226 0 19 chr11 16166497 16166550 -134617003 + L2 LINE L2 3016 3067 -205 1035 276 41 24 chr11 16166636 16167002 -134616551 + LTR16A LTR ERVL 74 443 -7 1149 267 115 33 chr11 16167042 16167812 -134615741 + L2 LINE L2 2467 3313 0 240 341 63 16 chr11 16167812 16167938 -134615615 + L2 LINE L2 3112 3243 -29 1241 168 0 0 chr11 16168186 16168383 -134615170 + MER2 DNA MER2_type 13 209 -136 27 29 0 0 chr11 16168386 16168420 -134615133 + AT_rich Low_complexity Low_complexity 1 34 0 247 296 61 10 chr11 16170915 16171013 -134612540 + L2 LINE L2 2606 2708 -606 386 238 0 0 chr11 16171064 16171148 -134612405 + MIR SINE MIR 49 132 -130 208 296 19 56 chr11 16172185 16172293 -134611260 + MIR SINE MIR 104 207 -55 529 225 0 50 chr11 16172384 16172504 -134611049 + MER81 DNA DNA 1 114 0 2243 127 22 55 chr11 16172530 16172933 -134610620 + MLT1B LTR MaLR 1 390 0 537 199 20 53 chr11 16172985 16173136 -134610417 - MIR SINE MIR -56 206 61 183 80 0 0 chr11 16173415 16173440 -134610113 + (GGGAA)n Simple_repeat Simple_repeat 3 27 0 2357 141 33 5 chr11 16173443 16173834 -134609719 + MER57A LTR ERV1 1 402 -1 252 255 0 0 chr11 16173938 16173989 -134609564 - Zaphod DNA AcHobo -1 4030 3980 1541 209 57 9 chr11 16174004 16174335 -134609218 + MLT1A1 LTR MaLR 19 365 0 323 303 8 8 chr11 16174352 16174474 -134609079 - MER115 DNA AcHobo -48 645 524 203 352 152 25 chr11 16174867 16175182 -134608371 - L2 LINE L2 -1 3271 2917 189 147 0 0 chr11 16175483 16175517 -134608036 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 1148 258 115 32 chr11 16176575 16177044 -134606509 + MLT1J LTR MaLR 1 508 -3 257 324 81 27 chr11 16177179 16177327 -134606226 - L2 LINE L2 0 3272 3117 299 279 48 10 chr11 16178571 16178675 -134604878 - MIR3 SINE MIR -19 189 82 295 280 19 28 chr11 16179556 16179663 -134603890 - L1M3d LINE L1 -5780 111 6 771 165 0 15 chr11 16179688 16179821 -134603732 + FLAM_C SINE Alu 2 132 -1 2308 98 0 10 chr11 16179964 16180261 -134603292 + AluSx SINE Alu 1 294 -18 1195 159 57 18 chr11 16180560 16180786 -134602767 - MLT1A1 LTR MaLR -5 360 126 1322 190 261 8 chr11 16180786 16181110 -134602443 + MSTB LTR MaLR 1 434 -23 180 0 0 0 chr11 16181228 16181248 -134602305 + (T)n Simple_repeat Simple_repeat 1 20 0 2263 83 17 0 chr11 16181294 16181583 -134601970 - AluY SINE Alu -17 294 1 218 246 16 16 chr11 16182007 16182068 -134601485 - L2 LINE L2 -22 3291 3231 201 346 13 0 chr11 16182495 16182573 -134600980 + MIR SINE MIR 183 261 -1 265 302 62 10 chr11 16182866 16182962 -134600591 - L2 LINE L2 -3 3269 3169 269 324 0 29 chr11 16183268 16183370 -134600183 + MLT1H LTR MaLR 162 260 -289 342 264 169 20 chr11 16185894 16186095 -134597458 - L3 LINE CR1 -4 1573 1343 515 274 53 32 chr11 16187518 16187708 -134595845 - L3 LINE CR1 -61 1516 1323 1079 258 69 52 chr11 16188140 16188799 -134594754 + L2 LINE L2 2649 3313 0 25 0 0 0 chr11 16188968 16188993 -134594560 + AT_rich Low_complexity Low_complexity 1 25 0 363 254 0 84 chr11 16189336 16189365 -134594188 + MIR SINE MIR 108 138 -124 1126 174 92 132 chr11 16189365 16189745 -134593808 - MLT1A1 LTR MaLR 0 365 1 363 254 0 84 chr11 16189745 16189857 -134593696 + MIR SINE MIR 138 237 -25 286 159 16 48 chr11 16190233 16190296 -134593257 + L2 LINE L2 3189 3249 -64 1094 285 117 3 chr11 16190419 16190777 -134592776 - LTR16A LTR ERVL 0 450 52 25 51 0 0 chr11 16191240 16191279 -134592274 + AT_rich Low_complexity Low_complexity 1 39 0 243 191 0 0 chr11 16191897 16191944 -134591609 + MIR SINE MIR 105 151 -111 231 362 91 19 chr11 16192081 16192346 -134591207 - L2 LINE L2 -351 2963 2680 207 246 0 0 chr11 16192428 16192446 -134591107 + (TTAG)n Simple_repeat Simple_repeat 4 21 -39 2242 172 32 3 chr11 16192446 16192823 -134590730 - MLT1B LTR MaLR -2 388 1 207 246 0 0 chr11 16192823 16192861 -134590692 + (TTAG)n Simple_repeat Simple_repeat 20 60 0 228 300 43 0 chr11 16192956 16193026 -134590527 + L2 LINE L2 3196 3268 -4 231 352 72 0 chr11 16193183 16193308 -134590245 - L3 LINE CR1 -53 1524 1391 377 306 55 47 chr11 16193322 16193577 -134589976 - MER102b DNA MER1_type -1 340 84 241 420 46 0 chr11 16193965 16194096 -134589457 + L2 LINE L2 3134 3270 -2 527 301 61 14 chr11 16194106 16194319 -134589234 - L3 LINE CR1 -274 1303 1081 395 312 48 32 chr11 16194381 16194567 -134588986 - MIR SINE MIR -67 195 7 21 0 0 0 chr11 16194990 16195011 -134588542 + AT_rich Low_complexity Low_complexity 1 21 0 373 320 0 0 chr11 16196123 16196251 -134587302 - L2 LINE L2 0 3313 3186 313 342 19 0 chr11 16196669 16196824 -134586729 + MER103 DNA DNA 3 160 -6 258 293 98 8 chr11 16196890 16197013 -134586540 - MIR3 SINE MIR -48 160 27 223 316 89 0 chr11 16197400 16197479 -134586074 - L3 LINE CR1 -98 1479 1394 258 280 140 32 chr11 16198532 16198689 -134584864 - MIR SINE MIR -15 193 20 279 265 12 12 chr11 16199030 16199113 -134584440 - MLT2E LTR ERVL -2 626 544 275 186 0 29 chr11 16199564 16199634 -134583919 + L1MA10 LINE L1 6266 6333 -1 251 254 70 0 chr11 16200873 16200944 -134582609 - LTR16C LTR ERVL -93 398 323 * 588 308 150 16 chr11 16200924 16201310 -134582243 + MLT1K LTR MaLR 144 581 -7 251 253 0 22 chr11 16201461 16201552 -134582001 + (CATATA)n Simple_repeat Simple_repeat 5 93 0 296 404 7 7 chr11 16202518 16202659 -134580894 + L2 LINE L2 3117 3257 -15 279 161 0 0 chr11 16202683 16202739 -134580814 + (TGGA)n Simple_repeat Simple_repeat 3 58 0 336 221 90 17 chr11 16202875 16203009 -134580544 - MIR SINE MIR -68 140 46 281 317 59 0 chr11 16203519 16203620 -134579933 - L3 LINE CR1 -15 1562 1456 266 297 135 32 chr11 16203660 16203845 -134579708 + MIR SINE MIR 52 255 -7 272 351 109 20 chr11 16203845 16204138 -134579415 - L3 LINE CR1 -165 1412 1094 455 310 41 18 chr11 16205915 16206086 -134577467 + MIR SINE MIR 72 246 -16 262 324 99 68 chr11 16206862 16207190 -134576363 + L2 LINE L2 2382 2737 -577 1220 214 21 18 chr11 16207190 16207470 -134576083 - AluJo SINE Alu -31 281 1 262 324 99 68 chr11 16207470 16207719 -134575834 + L2 LINE L2 2737 2977 -337 228 286 0 14 chr11 16207937 16208007 -134575546 + GA-rich Low_complexity Low_complexity 1 69 0 356 73 36 0 chr11 16208039 16208094 -134575459 + (GGGA)n Simple_repeat Simple_repeat 2 58 0 202 222 0 0 chr11 16208102 16208138 -134575415 + T-rich Low_complexity Low_complexity 4 39 0 225 146 0 0 chr11 16208208 16208256 -134575297 + (T)n Simple_repeat Simple_repeat 1 48 0 245 125 0 21 chr11 16208921 16208969 -134574584 + (TG)n Simple_repeat Simple_repeat 1 47 0 21 0 0 0 chr11 16209204 16209225 -134574328 + AT_rich Low_complexity Low_complexity 1 21 0 554 313 31 19 chr11 16209710 16209966 -134573587 + MIR SINE MIR 2 260 -2 473 286 17 40 chr11 16210254 16210429 -134573124 + MLT1J2 LTR MaLR 264 434 -16 188 354 100 8 chr11 16210986 16211116 -134572437 - L2 LINE L2 -180 3092 2951 521 181 118 8 chr11 16211890 16212017 -134571536 + MIR SINE MIR 51 191 -71 724 289 31 13 chr11 16212051 16212279 -134571274 - MIR SINE MIR -28 234 3 2223 129 21 46 chr11 16212386 16212534 -134571019 - THE1B LTR MaLR 0 364 214 1782 127 40 119 chr11 16212534 16212929 -134570624 - THE1B LTR MaLR 0 364 1 2223 129 21 46 chr11 16212929 16213153 -134570400 - THE1B LTR MaLR -150 214 1 1877 233 106 8 chr11 16213209 16213702 -134569851 - MLT1E LTR MaLR -2 591 51 554 221 33 0 chr11 16213733 16213855 -134569698 + MER94 DNA DNA 8 133 -1 868 172 6 45 chr11 16213933 16214090 -134569463 - MER8 DNA MER2_type 0 239 89 2134 173 51 15 chr11 16214891 16215302 -134568251 + MSTB LTR MaLR 1 426 0 354 332 101 62 chr11 16215677 16216187 -134567366 - L2 LINE L2 0 3272 2734 336 286 181 0 chr11 16216758 16216891 -134566662 - MIR SINE MIR -1 261 105 519 263 38 83 chr11 16217597 16217865 -134565688 - MIR SINE MIR -4 258 4 763 137 13 72 chr11 16219532 16219618 -134563935 + Charlie4 DNA MER1_type 1818 1893 -68 882 215 280 64 chr11 16219618 16220022 -134563531 + LTR16C LTR ERVL 1 491 0 763 137 13 72 chr11 16220022 16220088 -134563465 + Charlie4 DNA MER1_type 1893 1961 0 252 208 21 0 chr11 16220113 16220173 -134563380 - MIR SINE MIR -51 157 94 210 71 0 0 chr11 16220799 16220827 -134562726 + (TAA)n Simple_repeat Simple_repeat 1 28 0 321 208 104 40 chr11 16221511 16221636 -134561917 - L1MCa LINE L1 -4203 2223 2091 275 241 52 60 chr11 16221839 16221955 -134561598 - HAL1b LINE L1 -930 418 304 443 274 18 7 chr11 16223327 16223600 -134559953 + CT-rich Low_complexity Low_complexity 1 276 0 327 228 0 38 chr11 16223628 16223870 -134559683 + C-rich Low_complexity Low_complexity 1 232 0 4248 218 58 37 chr11 16224367 16226586 -134556967 - L1MCc LINE L1 -4326 2796 3 565 250 58 31 chr11 16227629 16227853 -134555700 + L2 LINE L2 3081 3310 -3 26 30 0 0 chr11 16227911 16227944 -134555609 + AT_rich Low_complexity Low_complexity 1 33 0 801 285 55 4 chr11 16227957 16228192 -134555361 - MIR SINE MIR -14 248 2 426 273 25 50 chr11 16228986 16229147 -134554406 + MER103 DNA DNA 6 162 -4 313 282 127 42 chr11 16230616 16230829 -134552724 + MIR SINE MIR 22 252 -10 532 309 18 18 chr11 16230864 16231029 -134552524 + MIR SINE MIR 1 165 -97 376 276 20 20 chr11 16231203 16231301 -134552252 + L1MEd LINE L1 434 531 -5588 234 202 0 121 chr11 16232028 16232127 -134551426 - LTR67 LTR ERVL 0 557 471 456 242 126 146 chr11 16232139 16232253 -134551300 + L1MEd LINE L1 104 219 -5986 858 165 0 0 chr11 16232253 16232386 -134551167 - FLAM_A SINE Alu 0 133 1 456 242 126 146 chr11 16232386 16233293 -134550260 + L1MEd LINE L1 219 1105 -5100 856 196 6 6 chr11 16233418 16233581 -134549972 - FRAM SINE Alu -13 163 1 295 308 13 31 chr11 16233583 16233742 -134549811 + L1MEd LINE L1 1554 1709 -4687 2195 123 0 0 chr11 16233746 16234046 -134549507 + AluSx SINE Alu 1 300 -12 295 99 37 25 chr11 16234297 16234378 -134549175 + (TA)n Simple_repeat Simple_repeat 1 82 0 332 263 58 74 chr11 16235283 16235648 -134547905 + L1MEd LINE L1 858 1216 -4903 3464 257 92 44 chr11 16235651 16236092 -134547461 + HAL1 LINE L1 4 422 -2085 817 198 105 6 chr11 16236092 16236264 -134547289 + MER5A DNA MER1_type 1 189 0 3464 257 92 44 chr11 16236264 16236281 -134547272 + HAL1 LINE L1 422 437 -2070 1745 171 4 0 chr11 16236281 16236556 -134546997 - AluSx SINE Alu -15 297 22 3464 257 92 44 chr11 16236556 16237581 -134545972 + HAL1 LINE L1 437 1559 -948 1043 266 91 44 chr11 16237633 16238353 -134545200 + HAL1 LINE L1 1651 2476 -31 378 269 73 59 chr11 16239149 16239435 -134544118 - LTR67 LTR ERVL -77 480 191 291 241 0 0 chr11 16239633 16239687 -134543866 + MIR SINE MIR 15 68 -194 * 710 269 137 74 chr11 16239685 16240079 -134543474 + L2 LINE L2 2895 3313 0 323 242 63 0 chr11 16240086 16240183 -134543370 + MIR SINE MIR 96 192 -63 512 328 65 5 chr11 16241322 16241532 -134542021 - MIR SINE MIR -35 227 7 246 32 0 0 chr11 16242256 16242287 -134541266 + (CA)n Simple_repeat Simple_repeat 2 32 0 813 252 14 14 chr11 16243243 16243453 -134540100 - MIR SINE MIR -1 261 52 320 374 47 26 chr11 16243476 16243666 -134539887 + L2 LINE L2 3073 3266 -6 368 368 12 6 chr11 16243728 16243899 -134539654 - MIR SINE MIR -14 248 77 441 333 80 51 chr11 16243969 16244636 -134538917 - L2 LINE L2 -171 3101 2405 186 71 0 0 chr11 16244877 16244905 -134538648 + (CA)n Simple_repeat Simple_repeat 1 28 0 324 200 0 0 chr11 16246758 16246813 -134536740 - L2 LINE L2 -8 3305 3251 203 297 9 126 chr11 16246849 16246960 -134536593 - L2 LINE L2 -15 3257 3160 515 270 29 1 chr11 16246989 16247138 -134536415 - MIR SINE MIR -65 143 20 514 269 71 39 chr11 16248233 16248415 -134535138 + MIR SINE MIR 24 211 -51 189 175 0 0 chr11 16248547 16248587 -134534966 + (TTA)n Simple_repeat Simple_repeat 2 41 0 182 271 85 0 chr11 16248887 16248946 -134534607 - L2 LINE L2 -1 3271 3208 585 155 0 42 chr11 16248995 16249137 -134534416 + (CATATA)n Simple_repeat Simple_repeat 6 141 0 291 274 36 12 chr11 16250064 16250148 -134533405 - MIR3 SINE MIR -12 196 111 182 333 23 46 chr11 16250176 16250263 -134533290 + L2 LINE L2 3178 3262 -10 376 262 107 16 chr11 16250569 16250691 -134532862 + L2 LINE L2 3181 3313 0 556 262 71 0 chr11 16250715 16250883 -134532670 + MER117 DNA MER1_type 14 193 -4 306 315 91 30 chr11 16252111 16252276 -134531277 + MIR SINE MIR 2 177 -31 210 333 18 45 chr11 16252569 16252680 -134530873 - MIR SINE MIR -68 140 44 561 262 0 20 chr11 16253083 16253232 -134530321 - L2 LINE L2 -1 3312 3167 1298 231 16 80 chr11 16253582 16254020 -134529533 + MLT1C LTR MaLR 1 410 -57 197 229 62 0 chr11 16254035 16254083 -134529470 - L2 LINE L2 -254 3059 3009 450 228 197 21 chr11 16254218 16254411 -134529142 + MIR SINE MIR 35 261 -1 357 263 35 76 chr11 16255089 16255260 -134528293 - L2 LINE L2 0 3313 3150 228 35 0 0 chr11 16256325 16256354 -134527199 + (GA)n Simple_repeat Simple_repeat 1 29 0 296 341 0 0 chr11 16256959 16257041 -134526512 + L3 LINE CR1 1416 1497 -80 220 262 155 12 chr11 16257264 16257348 -134526205 - MIR SINE MIR -77 131 36 624 291 49 45 chr11 16257632 16257763 -134525790 + MIR SINE MIR 18 152 -110 2267 103 3 13 chr11 16257763 16258073 -134525480 + AluSx SINE Alu 1 307 -5 624 291 49 45 chr11 16258073 16258185 -134525368 + MIR SINE MIR 152 262 0 777 290 60 11 chr11 16258339 16258807 -134524746 - LTR33 LTR ERVL -3 518 1 214 261 196 65 chr11 16260238 16260376 -134523177 + MIR SINE MIR 33 188 -74 4843 205 26 83 chr11 16260701 16261021 -134522532 + L1MC4 LINE L1 6750 7086 -956 243 0 0 0 chr11 16261021 16261048 -134522505 + (TAAA)n Simple_repeat Simple_repeat 4 30 0 4843 205 26 83 chr11 16261048 16262094 -134521459 + L1MC4 LINE L1 7086 8039 -3 634 301 40 61 chr11 16262490 16262786 -134520767 - MLT1I LTR MaLR 0 409 120 216 315 7 63 chr11 16264474 16264617 -134518936 + L2 LINE L2 2376 2510 -804 1626 199 0 23 chr11 16264756 16265062 -134518491 - AluJo SINE Alu -13 299 1 413 256 137 48 chr11 16265554 16265805 -134517748 + MLT1G LTR MaLR 19 296 -294 333 140 0 0 chr11 16266957 16267014 -134516539 + (A)n Simple_repeat Simple_repeat 1 57 0 1954 144 44 0 chr11 16267545 16267843 -134515710 - AluJo SINE Alu -1 311 1 349 350 7 21 chr11 16268399 16268539 -134515014 - MIR3 SINE MIR -48 160 23 33 0 0 0 chr11 16269340 16269373 -134514180 + AT_rich Low_complexity Low_complexity 1 33 0 300 343 89 18 chr11 16269390 16269559 -134513994 - L2 LINE L2 0 3313 3133 227 305 86 62 chr11 16269666 16269712 -134513841 + MIR SINE MIR 82 125 -137 2598 170 19 12 chr11 16269712 16270135 -134513418 - MSTB LTR MaLR 0 426 1 227 305 86 62 chr11 16270135 16270216 -134513337 + MIR SINE MIR 125 212 -50 228 67 0 0 chr11 16272316 16272346 -134511207 + (CA)n Simple_repeat Simple_repeat 1 30 0 234 267 0 33 chr11 16273603 16273663 -134509890 + L3 LINE CR1 1519 1576 -1 5845 56 10 0 chr11 16273788 16274470 -134509083 - L1PA7 LINE L1 -11 6143 5455 1599 82 0 0 chr11 16274470 16274689 -134508864 + L1P LINE L1 4999 5217 -929 648 334 54 32 chr11 16275812 16276219 -134507334 - L3 LINE CR1 -482 1095 680 312 317 59 21 chr11 16276800 16276991 -134506562 - MIR SINE MIR -55 153 11 597 220 70 149 chr11 16278543 16278784 -134504769 - MER58A DNA MER1_type 0 224 3 278 281 86 39 chr11 16279161 16279289 -134504264 + MIR SINE MIR 88 221 -41 241 231 19 141 chr11 16279365 16279521 -134504032 + MER102b DNA MER1_type 205 341 0 290 339 79 20 chr11 16279662 16279792 -134503761 + MIR SINE MIR 31 152 -110 1966 183 22 17 chr11 16279792 16280152 -134503401 + MLT1A1 LTR MaLR 4 365 0 290 339 79 20 chr11 16280152 16280178 -134503375 + MIR SINE MIR 152 175 -87 1848 201 28 8 chr11 16280178 16280536 -134503017 - MLT1A1 LTR MaLR 0 365 1 290 339 79 20 chr11 16280536 16280584 -134502969 + MIR SINE MIR 175 251 -11 379 279 108 0 chr11 16281074 16281185 -134502368 - L3 LINE CR1 -64 1513 1391 342 337 26 16 chr11 16281210 16281400 -134502153 - L3 LINE CR1 -802 775 584 236 317 89 0 chr11 16281860 16281954 -134501599 + MIR SINE MIR 48 146 -62 382 335 87 31 chr11 16282640 16283121 -134500432 - L1MC/D LINE L1 -2009 5799 5292 300 292 94 40 chr11 16283293 16283718 -134499835 - L1MC/D LINE L1 -1121 5025 4578 312 229 159 32 chr11 16283894 16284051 -134499502 - L1 LINE L1 -1793 4353 4177 2025 198 50 50 chr11 16284093 16284598 -134498955 - MLT1D LTR MaLR 0 505 1 321 245 123 9 chr11 16284929 16285035 -134498518 + L2 LINE L2 3192 3309 -4 363 312 25 54 chr11 16285238 16285552 -134498001 - HAL1b LINE L1 -547 801 497 275 241 52 60 chr11 16285580 16285696 -134497857 - HAL1b LINE L1 -930 418 304 243 376 0 0 chr11 16287356 16287465 -134496088 + MIR3 SINE MIR 77 185 -23 903 254 87 33 chr11 16288578 16288877 -134494676 - MLT1J2 LTR MaLR -135 315 1 236 283 181 22 chr11 16289933 16290071 -134493482 - MIR SINE MIR -6 256 97 384 248 71 18 chr11 16290515 16290628 -134492925 + MIR SINE MIR 18 136 -72 526 270 68 94 chr11 16291840 16292192 -134491361 + MLT1I LTR MaLR 67 409 0 390 262 238 20 chr11 16292379 16292581 -134490972 - MIR SINE MIR -6 256 11 545 243 45 45 chr11 16293259 16293461 -134490092 + MIR SINE MIR 48 249 -13 272 315 11 0 chr11 16293473 16293565 -134489988 + L2 LINE L2 3221 3313 0 25 31 0 0 chr11 16295813 16295845 -134487708 + AT_rich Low_complexity Low_complexity 1 32 0 287 322 11 0 chr11 16296107 16296194 -134487359 + MIR3 SINE MIR 115 202 -6 387 261 75 37 chr11 16297865 16297999 -134485554 + MIR SINE MIR 116 254 -8 472 258 39 0 chr11 16298754 16298882 -134484671 + MIR SINE MIR 120 252 -10 283 250 15 0 chr11 16298891 16298959 -134484594 + (CAT)n Simple_repeat Simple_repeat 3 71 0 296 345 112 9 chr11 16299922 16300038 -134483515 + MIR3 SINE MIR 3 130 -78 644 229 14 106 chr11 16300045 16300263 -134483290 + MIR SINE MIR 3 200 -62 420 231 0 0 chr11 16300288 16300366 -134483187 + L2 LINE L2 3191 3268 -45 224 321 44 51 chr11 16300638 16300775 -134482778 + MIR3 SINE MIR 43 178 -30 1873 139 66 0 chr11 16301002 16301290 -134482263 - AluJb SINE Alu -5 307 1 815 267 48 0 chr11 16301466 16301653 -134481900 - MER117 DNA MER1_type -1 196 1 259 321 18 4 chr11 16302644 16302740 -134480813 + MIR3 SINE MIR 94 173 -35 1235 295 36 88 chr11 16303442 16303929 -134479624 + MLT1K LTR MaLR 31 483 -105 1274 129 0 25 chr11 16303929 16304130 -134479423 + L1PB1 LINE L1 5956 6151 0 1235 295 36 88 chr11 16304130 16304231 -134479322 + MLT1K LTR MaLR 483 588 0 206 227 0 171 chr11 16304606 16304694 -134478859 + MIR SINE MIR 20 92 -170 201 300 0 0 chr11 16304724 16304774 -134478779 + MIR SINE MIR 91 140 -68 536 325 66 64 chr11 16304781 16305067 -134478486 + L2 LINE L2 2588 2872 -400 862 261 92 4 chr11 16305067 16305305 -134478248 - MIR SINE MIR -2 260 2 536 325 66 64 chr11 16305305 16305347 -134478206 + L2 LINE L2 2872 2912 -360 1985 214 96 17 chr11 16305347 16305815 -134477738 + MLT1D LTR MaLR 1 505 0 536 325 66 64 chr11 16305815 16305981 -134477572 + L2 LINE L2 2912 3076 -196 2121 140 0 3 chr11 16305981 16306295 -134477258 - AluSq SINE Alu 0 313 1 536 325 66 64 chr11 16306295 16306475 -134477078 + L2 LINE L2 3076 3272 0 295 338 54 7 chr11 16307572 16307720 -134475833 + MLT1L LTR MaLR 1 155 -460 306 0 0 0 chr11 16307720 16307754 -134475799 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 1114 287 179 22 chr11 16307763 16308642 -134474911 - L2 LINE L2 -23 3290 2257 420 82 0 0 chr11 16308770 16308831 -134474722 + (TGGA)n Simple_repeat Simple_repeat 1 61 0 480 313 27 16 chr11 16308869 16309048 -134474505 + MIR3 SINE MIR 18 197 -11 326 331 40 0 chr11 16309053 16309177 -134474376 + MIR SINE MIR 19 147 -115 252 86 0 0 chr11 16309303 16309338 -134474215 + (CA)n Simple_repeat Simple_repeat 2 36 0 206 271 71 12 chr11 16309543 16309628 -134473925 + MIR SINE MIR 155 244 -18 241 200 73 0 chr11 16310480 16310535 -134473018 - MLT1I LTR MaLR 0 409 351 236 345 42 49 chr11 16310712 16310854 -134472699 + L2 LINE L2 3128 3268 -4 286 270 110 0 chr11 16311121 16311221 -134472332 - L2 LINE L2 -8 3264 3154 736 260 163 22 chr11 16311262 16311489 -134472064 - MIR SINE MIR 0 262 4 333 47 47 16 chr11 16312067 16312131 -134471422 + (TTTTG)n Simple_repeat Simple_repeat 5 70 0 717 292 97 0 chr11 16312414 16312640 -134470913 - MIR SINE MIR -10 252 5 186 118 0 0 chr11 16312846 16312880 -134470673 + (CAGA)n Simple_repeat Simple_repeat 3 36 0 213 290 11 32 chr11 16313374 16313467 -134470086 + GA-rich Low_complexity Low_complexity 2 92 0 309 247 11 140 chr11 16313707 16313885 -134469668 + L2 LINE L2 3020 3174 -98 552 316 10 10 chr11 16313930 16314123 -134469430 + MIR SINE MIR 40 232 -30 262 211 42 56 chr11 16314158 16314229 -134469324 + L2 LINE L2 3244 3313 0 227 154 0 19 chr11 16315006 16315058 -134468495 + (CA)n Simple_repeat Simple_repeat 1 51 0 204 261 15 46 chr11 16316262 16316327 -134467226 - L2 LINE L2 -1 3312 3250 253 247 67 56 chr11 16317272 16317361 -134466192 + MIR SINE MIR 16 105 -157 188 74 0 0 chr11 16317399 16317426 -134466127 + L2 LINE L2 3275 3301 -12 397 286 79 8 chr11 16317596 16317722 -134465831 - L2 LINE L2 -1 3271 3137 2225 92 0 33 chr11 16317758 16318061 -134465492 + AluSg SINE Alu 1 293 -17 402 330 73 18 chr11 16318177 16318395 -134465158 - MIR SINE MIR -13 249 20 215 250 15 0 chr11 16318539 16318607 -134464946 + (TA)n Simple_repeat Simple_repeat 2 70 0 664 271 63 27 chr11 16318681 16319013 -134464540 - L1ME4a LINE L1 -205 5916 5573 306 318 111 5 chr11 16319200 16319398 -134464155 - L1ME4a LINE L1 -941 5205 4987 322 359 15 0 chr11 16319515 16319646 -134463907 - L1ME4a LINE L1 -1323 4823 4691 506 234 108 13 chr11 16319962 16320120 -134463433 + MIR SINE MIR 77 249 -13 393 294 112 23 chr11 16320566 16320780 -134462773 + MIR SINE MIR 19 251 -11 450 270 96 55 chr11 16320783 16321211 -134462342 - MLT1K LTR MaLR 0 588 165 212 0 0 35 chr11 16321580 16321609 -134461944 + (TTTTTA)n Simple_repeat Simple_repeat 3 30 0 1733 43 0 0 chr11 16321610 16321819 -134461734 - L1PA4 LINE L1 -3 6152 5944 223 300 0 0 chr11 16321956 16322016 -134461537 + CT-rich Low_complexity Low_complexity 3 62 0 222 345 0 27 chr11 16322625 16322735 -134460818 + CT-rich Low_complexity Low_complexity 1 107 0 274 275 46 55 chr11 16323116 16323225 -134460328 - MIR SINE MIR -70 192 85 210 192 8 77 chr11 16323609 16323616 -134459937 + (TA)n Simple_repeat Simple_repeat 2 8 -114 2069 163 21 0 chr11 16323616 16323953 -134459600 + MER2 DNA MER2_type 1 344 0 210 192 8 77 chr11 16323953 16324075 -134459478 + (TA)n Simple_repeat Simple_repeat 8 122 0 1107 185 0 5 chr11 16324216 16324405 -134459148 - MER5A DNA MER1_type -1 188 1 342 277 180 24 chr11 16324685 16324891 -134458662 - MIR SINE MIR -8 254 17 1189 84 0 11 chr11 16325315 16325365 -134458188 + (GGAA)n Simple_repeat Simple_repeat 1 225 0 1189 84 0 11 chr11 16325365 16325543 -134458010 + (GGAA)n Simple_repeat Simple_repeat 4 179 0 1332 219 93 26 chr11 16326000 16326453 -134457100 + HAL1b LINE L1 232 714 -634 215 30 0 30 chr11 16326606 16326639 -134456914 + (TTTTG)n Simple_repeat Simple_repeat 4 35 0 1217 257 87 30 chr11 16326692 16327267 -134456286 + HAL1b LINE L1 737 1344 -4 395 214 8 51 chr11 16327701 16327818 -134455735 - MIR SINE MIR -81 127 16 470 295 24 24 chr11 16328178 16328344 -134455209 + MIR3 SINE MIR 34 199 -9 502 200 90 115 chr11 16329251 16329451 -134454102 - MIR SINE MIR -54 208 14 278 49 0 24 chr11 16331749 16331790 -134451763 + (TTCC)n Simple_repeat Simple_repeat 3 42 0 2124 106 3 7 chr11 16331794 16332263 -134451290 - AluSg SINE Alu 0 468 1 302 254 36 45 chr11 16332297 16332407 -134451146 + L2 LINE L2 2945 3053 -219 218 179 0 0 chr11 16332798 16332837 -134450716 + (TATG)n Simple_repeat Simple_repeat 3 41 0 383 298 130 53 chr11 16333563 16333772 -134449781 - L1ME4a LINE L1 -279 5842 5651 2329 88 10 0 chr11 16333772 16334069 -134449484 + AluSq SINE Alu 1 300 -13 383 298 130 53 chr11 16334069 16334498 -134449055 - L1ME4a LINE L1 -470 5651 5383 776 267 42 33 chr11 16334547 16334787 -134448766 + MLT1E LTR MaLR 1 242 -351 301 294 28 9 chr11 16335074 16335183 -134448370 + L2 LINE L2 3154 3264 -8 259 312 89 25 chr11 16335772 16335929 -134447624 - MIR3 SINE MIR -29 179 13 581 228 32 25 chr11 16336331 16336489 -134447064 - MER91B DNA MER1_type -6 184 26 2315 223 82 31 chr11 16337788 16338386 -134445167 + L1ME3 LINE L1 5405 6044 -118 1212 228 4 12 chr11 16338386 16338627 -134444926 + MER8 DNA MER2_type 1 239 0 2315 223 82 31 chr11 16338627 16338709 -134444844 + L1ME3 LINE L1 6044 6120 -42 811 174 120 0 chr11 16338772 16338939 -134444614 + MER5A DNA MER1_type 3 189 0 270 265 31 20 chr11 16338939 16339037 -134444516 - MIR SINE MIR -91 171 73 1752 125 64 3 chr11 16339044 16339338 -134444215 - LTR62 LTR ERVK -1 718 407 2243 150 28 30 chr11 16339338 16339897 -134443656 - MLT2A2 LTR ERVL 0 554 1 2159 196 31 9 chr11 16339897 16340304 -134443249 - LTR62 LTR ERVK -303 416 1 425 263 38 15 chr11 16340681 16340814 -134442739 + L2 LINE L2 3178 3313 0 279 367 11 21 chr11 16340816 16341004 -134442549 - L2 LINE L2 -575 2739 2554 410 219 154 24 chr11 16341013 16341182 -134442371 + MIR SINE MIR 66 256 -6 2068 132 0 19 chr11 16341335 16341653 -134441900 - AluSx SINE Alu 0 312 1 626 264 84 16 chr11 16343272 16343425 -134440128 - MLT1K LTR MaLR 0 588 410 267 31 0 0 chr11 16343425 16343457 -134440096 + (TC)n Simple_repeat Simple_repeat 2 33 0 626 264 84 16 chr11 16343457 16343553 -134440000 - MLT1K LTR MaLR -178 410 322 207 298 117 80 chr11 16343674 16343882 -134439671 + L3 LINE CR1 1142 1341 -236 1140 225 126 18 chr11 16343882 16344216 -134439337 + MLT1A2 LTR MaLR 4 373 -1 207 298 117 80 chr11 16344216 16344393 -134439160 + L3 LINE CR1 1341 1541 -36 916 270 92 49 chr11 16344762 16345210 -134438343 - MLT1C LTR MaLR 0 467 1 2083 102 0 41 chr11 16346121 16346439 -134437114 - AluSx SINE Alu 0 306 1 237 284 0 0 chr11 16346440 16346507 -134437046 - MIR SINE MIR -112 150 84 1577 185 127 28 chr11 16348715 16349109 -134434444 - LTR40b LTR ERVL -27 435 3 206 286 18 0 chr11 16349399 16349455 -134434098 - L2 LINE L2 -2 3311 3255 1160 254 106 18 chr11 16349529 16349978 -134433575 - L2 LINE L2 -42 3271 2781 260 306 41 25 chr11 16350200 16350321 -134433232 - MIR3 SINE MIR -80 128 6 233 274 59 29 chr11 16352268 16352370 -134431183 + MLT1I LTR MaLR 39 143 -266 381 180 0 120 chr11 16352498 16352598 -134430955 + MLT1H LTR MaLR 431 518 -31 212 251 6 132 chr11 16353251 16353418 -134430135 + MIR SINE MIR 86 231 -31 549 295 24 6 chr11 16353582 16353748 -134429805 + MIR SINE MIR 20 188 -74 805 223 149 0 chr11 16356277 16356492 -134427061 - MIR SINE MIR 0 262 16 287 273 0 0 chr11 16356524 16356590 -134426963 - L2 LINE L2 -216 3056 2991 622 223 153 0 chr11 16356816 16356973 -134426580 + MER5A DNA MER1_type 9 189 0 193 236 82 73 chr11 16356996 16357106 -134426447 - MIR3 SINE MIR -89 119 9 427 287 37 7 chr11 16357452 16357588 -134425965 + MIR SINE MIR 29 168 -94 572 279 69 26 chr11 16358575 16358808 -134424745 - MIR SINE MIR -13 249 7 204 309 48 24 chr11 16358994 16359078 -134424475 - L3 LINE CR1 -520 1057 972 24 0 0 0 chr11 16359407 16359431 -134424122 + AT_rich Low_complexity Low_complexity 1 24 0 251 299 13 0 chr11 16359962 16360039 -134423514 - MIR SINE MIR -86 122 45 730 284 111 19 chr11 16360176 16360736 -134422817 - L2 LINE L2 -78 3235 2625 336 243 158 7 chr11 16360739 16360891 -134422662 - MIR SINE MIR -65 197 23 344 233 47 23 chr11 16361022 16361151 -134422402 - MIR SINE MIR -6 256 125 188 250 0 21 chr11 16361941 16361989 -134421564 - MIR SINE MIR -14 248 202 469 224 32 24 chr11 16362892 16363017 -134420536 - MER5B DNA MER1_type -51 127 2 294 366 49 0 chr11 16363037 16363220 -134420333 + MIR SINE MIR 50 241 -21 328 276 0 0 chr11 16364237 16364313 -134419240 + MER5C DNA MER1_type 1 76 -248 199 206 178 14 chr11 16365181 16365254 -134418299 + MIR SINE MIR 71 155 -107 1326 205 111 52 chr11 16365859 16366283 -134417270 - MLT1C LTR MaLR -8 459 11 1558 186 38 51 chr11 16366309 16366679 -134416874 + MLT1A1 LTR MaLR 1 365 0 197 260 20 0 chr11 16366686 16366736 -134416817 + L2 LINE L2 3258 3308 -5 237 298 114 0 chr11 16366757 16366871 -134416682 - L2 LINE L2 -8 3264 3138 838 232 55 25 chr11 16367795 16367950 -134415603 + MIR SINE MIR 1 167 -95 2238 125 27 6 chr11 16367950 16368287 -134415266 - MER2 DNA MER2_type 0 344 1 838 232 55 25 chr11 16368287 16368368 -134415185 + MIR SINE MIR 167 244 -18 252 295 67 19 chr11 16368461 16368566 -134414987 + L2 LINE L2 3162 3271 -1 1571 214 147 24 chr11 16368685 16369174 -134414379 + MLT1F1 LTR MaLR 20 567 0 494 281 78 6 chr11 16369324 16369491 -134414062 + MIR SINE MIR 46 224 -38 649 311 82 20 chr11 16369570 16369924 -134413629 - L2 LINE L2 -1 3312 2937 662 208 16 0 chr11 16369925 16370050 -134413503 - L2 LINE L2 -3 3310 3184 644 303 96 13 chr11 16370075 16370532 -134413021 - L2 LINE L2 -252 3061 2553 778 234 42 33 chr11 16370629 16370843 -134412710 + MIR SINE MIR 10 225 -37 188 244 0 0 chr11 16370809 16370850 -134412703 - L2 LINE L2 -368 2946 2906 * 2114 150 18 3 chr11 16371277 16371617 -134411936 + MER7A DNA MER2_type 4 346 0 227 274 137 10 chr11 16371717 16371819 -134411734 + LTR33 LTR ERVL 6 120 -401 277 214 22 45 chr11 16371907 16371996 -134411557 + LTR33 LTR ERVL 358 444 -77 187 324 88 29 chr11 16372735 16372837 -134410716 - L3 LINE CR1 -114 1463 1356 200 239 70 28 chr11 16373067 16373138 -134410415 - L2 LINE L2 -3 3310 3237 2222 160 22 3 chr11 16373335 16373692 -134409861 - THE1B LTR MaLR 0 364 1 320 252 72 27 chr11 16373875 16373986 -134409567 - L3 LINE CR1 -108 1469 1354 393 39 0 0 chr11 16374082 16374133 -134409420 + (TG)n Simple_repeat Simple_repeat 2 52 0 21 0 0 0 chr11 16374818 16374839 -134408714 + AT_rich Low_complexity Low_complexity 1 21 0 759 287 39 88 chr11 16375079 16375615 -134407938 + LTR67 LTR ERVL 23 532 -25 395 320 53 7 chr11 16377391 16377541 -134406012 - MIR SINE MIR -83 179 23 248 133 17 0 chr11 16377859 16377919 -134405634 + (CA)n Simple_repeat Simple_repeat 1 61 0 426 144 11 64 chr11 16377947 16378135 -134405418 + (CA)n Simple_repeat Simple_repeat 2 179 0 250 273 16 16 chr11 16378165 16378286 -134405267 + (CA)n Simple_repeat Simple_repeat 1 121 0 188 67 33 0 chr11 16378297 16378327 -134405226 + (CA)n Simple_repeat Simple_repeat 1 31 0 216 192 35 29 chr11 16378353 16378525 -134405028 + (CA)n Simple_repeat Simple_repeat 1 173 0 494 161 22 7 chr11 16378586 16378723 -134404830 + (CA)n Simple_repeat Simple_repeat 2 140 0 349 93 21 98 chr11 16378744 16378937 -134404616 + (CA)n Simple_repeat Simple_repeat 2 179 0 350 242 92 121 chr11 16379230 16379503 -134404050 - L1ME4a LINE L1 -2 6119 5855 637 290 190 42 chr11 16379507 16380091 -134403462 - L2 LINE L2 0 3313 2628 1819 202 29 69 chr11 16380101 16380620 -134402933 + MLT1D LTR MaLR 8 505 0 181 257 80 107 chr11 16380620 16380807 -134402746 - L2 LINE L2 -686 2628 2447 487 239 43 17 chr11 16380834 16380951 -134402602 + L2 LINE L2 3149 3268 -4 1649 199 100 51 chr11 16382594 16383137 -134400416 + MLT1F1 LTR MaLR 1 567 0 428 300 23 15 chr11 16383209 16383339 -134400214 + MIR3 SINE MIR 39 169 -39 186 297 27 14 chr11 16383314 16383388 -134400165 - L2 LINE L2 -838 2476 2402 * 957 183 99 15 chr11 16384395 16384597 -134398956 - MER20 DNA MER1_type 0 219 1 231 125 0 0 chr11 16384718 16384758 -134398795 + (TC)n Simple_repeat Simple_repeat 2 41 0 267 31 0 0 chr11 16384758 16384790 -134398763 + (CA)n Simple_repeat Simple_repeat 1 32 0 319 246 45 63 chr11 16384813 16384956 -134398597 - MIR3 SINE MIR -85 123 2 1079 167 63 13 chr11 16385531 16385770 -134397783 + MER44D DNA MER2_type 1 521 -88 458 207 0 0 chr11 16385800 16385887 -134397666 - Tigger5 DNA MER2_type -2235 88 2 429 198 12 0 chr11 16385892 16385978 -134397575 + MER44D DNA MER2_type 619 705 0 704 218 153 72 chr11 16386039 16386439 -134397114 - MLT1H LTR MaLR -5 544 113 2361 237 43 34 chr11 16387120 16387566 -134395987 - L1ME1 LINE L1 -5 6161 5704 1831 186 64 3 chr11 16387566 16387910 -134395643 + MLT1A1 LTR MaLR 1 365 0 2361 237 43 34 chr11 16387910 16388202 -134395351 - L1ME1 LINE L1 -462 5704 5416 287 263 25 12 chr11 16388232 16388312 -134395241 + MLT1J LTR MaLR 70 150 -361 530 303 78 76 chr11 16389778 16390213 -134393340 + L2 LINE L2 2836 3271 -1 202 229 42 0 chr11 16390219 16390267 -134393286 + (TAAA)n Simple_repeat Simple_repeat 3 52 0 452 298 58 26 chr11 16390284 16390475 -134393078 + L2 LINE L2 3117 3313 0 444 19 0 0 chr11 16390749 16390802 -134392751 + (TATG)n Simple_repeat Simple_repeat 2 54 0 2173 119 0 0 chr11 16390802 16391088 -134392465 - AluSq SINE Alu -27 286 1 26 0 0 0 chr11 16391088 16391114 -134392439 + AT_rich Low_complexity Low_complexity 1 26 0 209 205 0 0 chr11 16391711 16391750 -134391803 + GA-rich Low_complexity Low_complexity 2 40 0 510 163 0 0 chr11 16391755 16391853 -134391700 + (TGGA)n Simple_repeat Simple_repeat 4 101 0 331 261 80 51 chr11 16392361 16392499 -134391054 - MIR SINE MIR -46 216 75 2463 64 0 3 chr11 16393166 16393462 -134390091 + AluY SINE Alu 1 295 -16 2124 134 3 10 chr11 16393970 16394268 -134389285 + AluSx SINE Alu 1 296 -16 233 293 23 58 chr11 16395000 16395174 -134388379 + L1ME4a LINE L1 5618 5785 -336 559 16 0 0 chr11 16395284 16395348 -134388205 + L1PA5 LINE L1 6078 6141 -13 21 0 0 0 chr11 16395348 16395369 -134388184 + AT_rich Low_complexity Low_complexity 1 21 0 676 286 112 40 chr11 16396183 16396532 -134387021 + MLT1J LTR MaLR 35 408 -103 333 238 168 0 chr11 16397006 16397107 -134386446 + L1ME4a LINE L1 6003 6120 -1 2339 208 35 65 chr11 16397167 16397738 -134385815 + MLT2B3 LTR ERVL 1 554 0 474 317 110 6 chr11 16397838 16398002 -134385551 - MIR SINE MIR -35 227 47 360 225 78 110 chr11 16398099 16398290 -134385263 - MLT1K LTR MaLR -6 582 398 404 296 138 28 chr11 16398337 16398584 -134384969 - MLT1K LTR MaLR -271 317 44 216 266 51 13 chr11 16399009 16399088 -134384465 - L2 LINE L2 -4 3309 3228 1370 204 77 79 chr11 16399145 16399611 -134383942 - MLT1C LTR MaLR -2 465 1 194 333 86 51 chr11 16400048 16400165 -134383388 + L2 LINE L2 3151 3271 -1 252 292 40 75 chr11 16400223 16400379 -134383174 + MIR SINE MIR 18 168 -61 410 348 34 20 chr11 16401302 16401506 -134382047 - L2 LINE L2 -160 3112 2906 302 237 126 22 chr11 16402018 16402153 -134381400 + L1MEd LINE L1 4 152 -5967 517 245 157 67 chr11 16402402 16402936 -134380617 + L1MEd LINE L1 650 1231 -4888 873 286 77 109 chr11 16402939 16403464 -134380089 + L1MEd LINE L1 1293 1777 -4533 2099 160 30 0 chr11 16403464 16403801 -134379752 + MER7A DNA MER2_type 2 346 0 873 286 77 109 chr11 16403801 16404200 -134379353 + L1MEd LINE L1 1777 2187 -4123 513 276 140 17 chr11 16404205 16404734 -134378819 + L1MEd LINE L1 2153 2746 -3383 218 116 23 0 chr11 16404795 16404838 -134378715 + (CCA)n Simple_repeat Simple_repeat 1 44 0 313 254 75 11 chr11 16405153 16405315 -134378238 + L1MEd LINE L1 3602 3767 -2362 210 333 71 30 chr11 16405344 16405443 -134378110 - MIR3 SINE MIR -36 172 70 312 250 53 0 chr11 16405636 16405712 -134377841 - MIR SINE MIR -59 203 124 315 0 0 0 chr11 16406040 16406075 -134377478 + (CA)n Simple_repeat Simple_repeat 1 35 0 203 283 38 0 chr11 16406118 16406171 -134377382 + MIR SINE MIR 21 75 -133 890 259 126 40 chr11 16406419 16406847 -134376706 - MLT1J LTR MaLR -46 465 1 400 263 151 78 chr11 16407585 16407790 -134375763 - MIR SINE MIR -12 250 31 233 286 12 24 chr11 16408057 16408141 -134375412 + L2 LINE L2 3175 3257 -56 536 261 59 50 chr11 16408159 16408381 -134375172 + L2 LINE L2 3090 3313 0 588 345 25 13 chr11 16409992 16410230 -134373323 - MIR SINE MIR -20 242 2 206 344 21 21 chr11 16410266 16410362 -134373191 + MIR3 SINE MIR 81 176 -32 274 256 37 0 chr11 16412826 16412908 -134370645 - MIR SINE MIR -4 258 174 182 239 22 22 chr11 16413305 16413351 -134370202 - MIR SINE MIR -106 156 111 245 311 215 0 chr11 16414809 16414944 -134368609 + L2 LINE L2 2943 3106 -166 576 192 42 0 chr11 16415060 16415180 -134368373 - MER96B DNA MER1_type? -1 416 292 387 194 0 0 chr11 16415202 16415295 -134368258 + (CA)n Simple_repeat Simple_repeat 2 94 0 240 258 204 30 chr11 16415464 16415596 -134367957 - MER5B DNA MER1_type -23 155 1 301 317 217 37 chr11 16415885 16416349 -134367204 - L2 LINE L2 -49 3264 2734 215 173 19 58 chr11 16416882 16416934 -134366619 - L2 LINE L2 -26 3287 3238 183 233 192 27 chr11 16417115 16417188 -134366365 - MIR SINE MIR -111 151 67 302 244 80 159 chr11 16417368 16417569 -134365984 + MIR SINE MIR 19 203 -5 240 357 0 0 chr11 16417740 16417838 -134365715 + L2 LINE L2 2968 3065 -248 1977 252 127 4 chr11 16417851 16418677 -134364876 - L1M4 LINE L1 -2118 4028 3101 330 261 103 24 chr11 16418882 16419047 -134364506 - MER117 DNA MER1_type -4 193 16 1032 166 118 0 chr11 16420166 16420353 -134363200 - MER3 DNA MER1_type 0 209 1 212 334 33 92 chr11 16420604 16420909 -134362644 - L2 LINE L2 -100 3172 2886 200 274 65 0 chr11 16420947 16421009 -134362544 + L2 LINE L2 3248 3313 0 726 204 96 0 chr11 16421296 16421453 -134362100 - MER5A DNA MER1_type -1 188 17 265 306 20 20 chr11 16421457 16421555 -134361998 - MIR SINE MIR -153 109 12 185 300 14 43 chr11 16422449 16422519 -134361034 - L2 LINE L2 0 3272 3205 180 324 0 28 chr11 16423027 16423098 -134360455 + MIR SINE MIR 172 240 -22 2845 244 90 105 chr11 16423152 16424063 -134359490 + HAL1 LINE L1 7 930 -1577 233 56 0 28 chr11 16424063 16424099 -134359454 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 2845 244 90 105 chr11 16424099 16424821 -134358732 + HAL1 LINE L1 930 1661 -846 2798 153 7 16 chr11 16424821 16425251 -134358302 - MSTB LTR MaLR 0 426 1 2845 244 90 105 chr11 16425251 16425744 -134357809 + HAL1 LINE L1 1661 2104 -403 2538 123 25 6 chr11 16425744 16426101 -134357452 + THE1B LTR MaLR 1 364 0 2845 244 90 105 chr11 16426101 16426132 -134357421 + HAL1 LINE L1 2104 2134 -373 404 256 22 122 chr11 16426153 16426423 -134357130 + HAL1 LINE L1 2265 2507 0 865 289 121 53 chr11 16426568 16427168 -134356385 + L2 LINE L2 2665 3313 0 459 219 126 33 chr11 16427180 16427331 -134356222 - MIR SINE MIR -71 191 27 644 201 26 124 chr11 16427416 16427610 -134355943 + MER5B DNA MER1_type 4 178 0 21 57 0 0 chr11 16427929 16427964 -134355589 + AT_rich Low_complexity Low_complexity 1 35 0 875 232 53 29 chr11 16427971 16428019 -134355534 - MER58A DNA MER1_type -2208 212 167 2420 119 121 16 chr11 16428019 16428406 -134355147 - MSTA LTR MaLR 0 428 1 875 232 53 29 chr11 16428406 16428564 -134354989 - MER58A DNA MER1_type -2253 167 1 234 288 144 24 chr11 16428841 16428966 -134354587 - L2 LINE L2 0 3272 3133 968 253 131 17 chr11 16429192 16429654 -134353899 + MLT1K LTR MaLR 23 575 -13 28 79 0 0 chr11 16430819 16430882 -134352671 + AT_rich Low_complexity Low_complexity 1 63 0 1484 102 9 14 chr11 16431276 16431492 -134352061 + AluSg/x SINE Alu 96 310 -2 1390 274 85 39 chr11 16431937 16432502 -134351051 + MLT1G1 LTR MaLR 5 595 0 2080 101 47 7 chr11 16432586 16432882 -134350671 - AluSp SINE Alu -5 308 1 485 185 44 109 chr11 16432893 16433130 -134350423 + MER106B DNA MER1_type 6 1055 -4 322 326 47 8 chr11 16433208 16433337 -134350216 + MIR SINE MIR 73 206 -56 232 111 28 0 chr11 16433685 16433721 -134349832 - MIR SINE MIR -11 251 215 236 343 39 0 chr11 16433822 16433924 -134349629 - L2 LINE L2 -221 3051 2946 228 376 0 0 chr11 16434758 16434843 -134348710 + MIR SINE MIR 37 121 -87 229 250 0 0 chr11 16434987 16435031 -134348522 - MER5A DNA MER1_type -137 52 9 1579 177 14 14 chr11 16435890 16436184 -134347369 - AluSx SINE Alu -18 294 1 277 305 141 0 chr11 16436417 16436545 -134347008 - L2 LINE L2 -6 3307 3162 454 291 138 0 chr11 16437134 16437337 -134346216 - MIR SINE MIR -29 233 3 255 254 17 0 chr11 16440832 16440891 -134342662 + CT-rich Low_complexity Low_complexity 1 60 0 189 0 0 0 chr11 16440906 16440927 -134342626 + (T)n Simple_repeat Simple_repeat 1 21 0 206 286 0 14 chr11 16442265 16442335 -134341218 + GA-rich Low_complexity Low_complexity 3 71 0 246 62 0 0 chr11 16444431 16444463 -134339090 + (CAA)n Simple_repeat Simple_repeat 2 33 0 540 283 70 27 chr11 16446503 16446690 -134336863 - MIR SINE MIR -17 245 51 556 272 83 28 chr11 16447182 16447362 -134336191 + MIR SINE MIR 22 211 -51 6564 249 67 99 chr11 16447686 16450891 -134332662 + L2 LINE L2 194 3313 0 501 293 135 72 chr11 16450937 16451271 -134332282 + L3 LINE CR1 1215 1569 -8 579 223 16 171 chr11 16452683 16452988 -134330565 - MIR SINE MIR -3 259 2 560 293 68 11 chr11 16453061 16453252 -134330301 + MIR SINE MIR 46 247 -15 1487 141 24 8 chr11 16453312 16453561 -134329992 + MER2 DNA MER2_type 11 263 -82 290 151 245 0 chr11 16453625 16453678 -134329875 + MER2 DNA MER2_type 280 345 0 2886 261 111 51 chr11 16503952 16505451 -134278102 - HAL1 LINE L1 -918 1589 1 209 33 33 0 chr11 16505949 16505979 -134277574 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2166 100 0 17 chr11 16505982 16506282 -134277271 - AluSc SINE Alu -14 295 1 2138 148 9 15 chr11 16506326 16506665 -134276888 - MER1B DNA MER1_type 0 337 1 911 194 0 0 chr11 16506666 16506831 -134276722 + L1MD2 LINE L1 6166 6330 -29 558 309 99 9 chr11 16506896 16507129 -134276424 + MIR SINE MIR 3 256 -6 204 40 0 0 chr11 16507136 16507161 -134276392 + (CAT)n Simple_repeat Simple_repeat 3 27 0 301 286 43 36 chr11 16507627 16507767 -134275786 + MIR3 SINE MIR 20 160 -48 842 179 5 70 chr11 16507768 16507969 -134275584 + MER5A DNA MER1_type 2 189 0 668 217 14 7 chr11 16507989 16508127 -134275426 - MER5A DNA MER1_type -49 140 2 182 305 0 34 chr11 16508127 16508175 -134275378 + L3 LINE CR1 1527 1572 -5 207 253 0 51 chr11 16509598 16509677 -134273876 + GA-rich Low_complexity Low_complexity 1 75 0 182 37 37 0 chr11 16510709 16510736 -134272817 + (TTTG)n Simple_repeat Simple_repeat 3 30 0 643 158 30 0 chr11 16510749 16510914 -134272639 + CT-rich Low_complexity Low_complexity 1 170 0 244 354 9 44 chr11 16512046 16512159 -134271394 - L2 LINE L2 0 3272 3164 275 281 191 0 chr11 16512954 16513043 -134270510 + L2 LINE L2 3208 3313 0 272 225 214 11 chr11 16514429 16514518 -134269035 - L2 LINE L2 0 3313 3207 261 224 0 40 chr11 16514528 16514604 -134268949 + L1MC4 LINE L1 6630 6702 -1340 858 302 27 59 chr11 16514604 16515150 -134268403 - L2 LINE L2 -139 3174 2593 765 0 0 0 chr11 16516059 16516144 -134267409 + (GGAA)n Simple_repeat Simple_repeat 4 88 0 275 173 50 173 chr11 16518486 16518625 -134264928 - MIR3 SINE MIR -6 202 81 238 340 3 3 chr11 16518814 16518922 -134264631 - MIR3 SINE MIR -53 155 47 2118 117 0 22 chr11 16518949 16519265 -134264288 - AluSp SINE Alu -1 312 4 2199 232 44 25 chr11 16519653 16520363 -134263190 + L1ME1 LINE L1 3750 4472 -1674 1062 171 34 0 chr11 16520370 16520575 -134262978 + L1MA9 LINE L1 6067 6278 -34 * 2559 243 79 14 chr11 16520558 16522053 -134261500 + L1ME1 LINE L1 4432 6035 -131 447 290 16 32 chr11 16522161 16522285 -134261268 - MIR SINE MIR -92 170 49 356 138 15 0 chr11 16522328 16522393 -134261160 + GA-rich Low_complexity Low_complexity 2 67 0 484 313 38 33 chr11 16522496 16522707 -134260846 - MIR SINE MIR -5 257 46 682 327 103 27 chr11 16522822 16523189 -134260364 - L3 LINE CR1 -5 1572 1178 22 0 0 0 chr11 16523225 16523247 -134260306 + AT_rich Low_complexity Low_complexity 1 22 0 1758 169 3 7 chr11 16527487 16527816 -134255737 + AluJb SINE Alu 1 312 0 257 313 36 0 chr11 16528782 16528865 -134254688 - MIR SINE MIR 0 262 177 185 296 0 19 chr11 16528864 16528918 -134254635 + MIR SINE MIR 90 142 -120 * 185 339 0 0 chr11 16529988 16530044 -134253509 - L2 LINE L2 -12 3260 3205 217 393 87 0 chr11 16530105 16530278 -134253275 + L2 LINE L2 3116 3303 -10 4471 183 9 2 chr11 16530533 16531439 -134252114 + L1 LINE L1 4323 5234 -912 28 48 0 0 chr11 16531996 16532038 -134251515 + AT_rich Low_complexity Low_complexity 1 42 0 304 302 119 48 chr11 16532158 16532284 -134251269 - MIR3 SINE MIR -23 185 51 414 0 0 0 chr11 16532801 16532847 -134250706 + (TA)n Simple_repeat Simple_repeat 1 46 0 353 270 61 9 chr11 16533007 16533122 -134250431 - MIR SINE MIR -6 256 136 26 0 0 0 chr11 16533156 16533182 -134250371 + AT_rich Low_complexity Low_complexity 1 26 0 5498 171 34 13 chr11 16533746 16535856 -134247697 + L1M1 LINE L1 3617 5807 -497 2726 108 3 5 chr11 16535956 16536344 -134247209 + THE1B-int LTR MaLR 1194 1580 0 2599 101 3 6 chr11 16536344 16536709 -134246844 + THE1B LTR MaLR 1 364 0 1233 101 0 39 chr11 16536709 16536916 -134246637 + L1MA2 LINE L1 6106 6304 0 201 39 0 0 chr11 16537181 16537207 -134246346 + (TAGGG)n Simple_repeat Simple_repeat 5 30 0 382 373 52 12 chr11 16537819 16538071 -134245482 + L2 LINE L2 2995 3256 -16 1186 31 13 0 chr11 16538516 16538675 -134244878 + (GAAA)n Simple_repeat Simple_repeat 1 161 0 2093 101 7 0 chr11 16539829 16540151 -134243402 - AluSg SINE Alu 0 324 1 1172 216 39 12 chr11 16540207 16540461 -134243092 - MIR SINE MIR 0 262 2 2853 138 40 0 chr11 16540605 16541053 -134242500 + Tigger1 DNA MER2_type 1 466 -1952 * 8613 116 37 30 chr11 16541048 16542195 -134241358 + Tigger1 DNA MER2_type 1014 2151 -267 1789 112 0 4 chr11 16542195 16542446 -134241107 - AluSc SINE Alu -21 288 39 8613 116 37 30 chr11 16542446 16542575 -134240978 + Tigger1 DNA MER2_type 2151 2278 -140 1400 177 0 113 chr11 16542575 16542902 -134240651 - AluJo SINE Alu -12 290 1 8613 116 37 30 chr11 16542902 16543018 -134240535 + Tigger1 DNA MER2_type 2278 2417 -1 1716 143 40 4 chr11 16543320 16543627 -134239926 + AluSx SINE Alu 1 317 0 2323 99 47 11 chr11 16543850 16544212 -134239341 + THE1C LTR MaLR 1 375 0 216 293 154 8 chr11 16544402 16544525 -134239028 - MIR SINE MIR -69 193 53 3618 220 114 38 chr11 16544560 16544719 -134238834 - L1MC4 LINE L1 -327 7715 7569 3507 31 0 0 chr11 16544719 16545138 -134238415 - L1PA4 LINE L1 -3 6152 5734 3618 220 114 38 chr11 16545138 16546112 -134237441 - L1MC4 LINE L1 -473 7569 6496 245 29 29 0 chr11 16546112 16546146 -134237407 + (TA)n Simple_repeat Simple_repeat 2 36 0 231 215 101 25 chr11 16546196 16546275 -134237278 - L1MC4 LINE L1 -1340 6702 6618 2288 64 4 0 chr11 16546750 16547063 -134236490 + AluY SINE Alu 1 314 0 471 339 32 29 chr11 16547412 16547760 -134235793 + L1PA15 LINE L1 2 350 -7231 8252 226 18 25 chr11 16548715 16551431 -134232122 + L1PA15 LINE L1 2319 5036 -2548 2756 192 3 37 chr11 16551426 16552051 -134231502 + L1PA15 LINE L1 5767 6370 -1214 * 1398 164 50 47 chr11 16552053 16552227 -134231326 - THE1B LTR MaLR 0 364 192 3306 91 4 0 chr11 16552227 16552679 -134230874 + L1PA6 LINE L1 5686 6139 -15 1398 164 50 47 chr11 16552679 16552926 -134230627 - THE1B LTR MaLR -172 192 1 5220 149 24 12 chr11 16552926 16553393 -134230160 + L1PA15 LINE L1 6368 6828 -775 2265 108 118 40 chr11 16553393 16553613 -134229940 - MSTA LTR MaLR 0 428 227 2878 9 0 0 chr11 16553613 16553931 -134229622 - AluYb8 SINE Alu 0 318 1 2265 108 118 40 chr11 16553931 16554107 -134229446 - MSTA LTR MaLR -201 227 1 5220 149 24 12 chr11 16554107 16554815 -134228738 + L1PA15 LINE L1 6828 7560 -43 906 271 114 36 chr11 16555405 16555907 -134227646 - L2 LINE L2 0 3313 2762 23 54 0 0 chr11 16556401 16556438 -134227115 + AT_rich Low_complexity Low_complexity 1 37 0 6305 208 23 75 chr11 16556626 16557011 -134226542 - L1MB4 LINE L1 0 6180 5776 399 89 0 0 chr11 16557011 16557067 -134226486 + (TA)n Simple_repeat Simple_repeat 1 56 0 6305 208 23 75 chr11 16557067 16558880 -134224673 - L1MB4 LINE L1 -404 5776 4047 896 200 0 0 chr11 16558880 16559025 -134224528 - FRAM SINE Alu -31 145 1 6305 208 23 75 chr11 16559025 16559683 -134223870 - L1MB4 LINE L1 -2133 4047 3356 219 69 0 0 chr11 16559776 16559805 -134223748 + (TG)n Simple_repeat Simple_repeat 2 30 0 219 69 0 0 chr11 16559829 16559858 -134223695 + (TG)n Simple_repeat Simple_repeat 2 30 0 363 297 33 82 chr11 16559861 16560043 -134223510 - MIR SINE MIR -70 192 20 33 25 0 0 chr11 16560428 16560468 -134223085 + AT_rich Low_complexity Low_complexity 1 40 0 7173 162 12 6 chr11 16560477 16562753 -134220800 - L1PB1 LINE L1 -61 6090 3805 250 235 10 51 chr11 16564363 16564461 -134219092 + CT-rich Low_complexity Low_complexity 3 96 0 183 358 28 64 chr11 16566091 16566200 -134217353 - L2 LINE L2 -6 3266 3162 21 57 0 0 chr11 16566273 16566308 -134217245 + AT_rich Low_complexity Low_complexity 1 35 0 293 379 75 0 chr11 16568799 16568960 -134214593 - MIR SINE MIR -68 194 22 216 0 0 0 chr11 16571548 16571572 -134211981 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 257 265 99 43 chr11 16573268 16573430 -134210123 + MIR SINE MIR 34 204 -58 338 245 10 61 chr11 16573547 16573645 -134209908 + L2 LINE L2 3181 3273 -40 2691 126 11 26 chr11 16575779 16576232 -134207321 + L1MC1 LINE L1 5888 6333 0 228 229 16 33 chr11 16576263 16576324 -134207229 - L2 LINE L2 0 3313 3254 541 208 0 0 chr11 16576394 16576500 -134207053 + MER20 DNA MER1_type 113 218 -1 296 245 51 20 chr11 16576511 16576609 -134206944 - L2 LINE L2 -62 3251 3151 207 204 0 0 chr11 16577089 16577133 -134206420 + (TA)n Simple_repeat Simple_repeat 1 44 0 276 306 0 0 chr11 16577198 16577283 -134206270 - MIR SINE MIR -104 158 74 651 232 74 36 chr11 16579482 16579707 -134203846 + MIR SINE MIR 28 251 -11 284 264 0 28 chr11 16579744 16579816 -134203737 - L2 LINE L2 0 3313 3244 208 175 0 25 chr11 16579920 16579960 -134203593 + (TATG)n Simple_repeat Simple_repeat 2 40 0 181 222 0 44 chr11 16580194 16580239 -134203314 - MIR3 SINE MIR -2 206 164 * 197 200 0 0 chr11 16580205 16580240 -134203313 - L3b LINE CR1 -7 1576 1542 * 412 263 165 17 chr11 16580233 16580422 -134203131 + MIR SINE MIR 40 252 -10 * 421 284 24 47 chr11 16580371 16580498 -134203055 - MIR3 SINE MIR -15 193 70 535 340 82 58 chr11 16580840 16581336 -134202217 - L2 LINE L2 -4 3268 2776 21 0 0 0 chr11 16583041 16583062 -134200491 + AT_rich Low_complexity Low_complexity 1 21 0 1060 184 20 30 chr11 16583062 16583263 -134200290 - AluJo SINE Alu -20 292 94 732 192 29 24 chr11 16583638 16583815 -134199738 - MIR SINE MIR -16 246 68 213 231 0 0 chr11 16583859 16583911 -134199642 + T-rich Low_complexity Low_complexity 1 52 0 700 130 55 20 chr11 16583916 16584062 -134199491 - L1MA7 LINE L1 -1 6290 6140 287 25 0 0 chr11 16584062 16584102 -134199451 - L1PA2 LINE L1 -4 6151 6112 998 184 18 0 chr11 16584595 16584763 -134198790 + AluSq SINE Alu 128 298 -15 41831 57 4 0 chr11 16585025 16591147 -134192406 + L1PA5 LINE L1 11 6153 -1 287 53 0 0 chr11 16596496 16596534 -134187019 - AluSx SINE Alu -6 296 259 1308 104 19 66 chr11 16596534 16596600 -134186953 - AluSx SINE Alu -110 202 134 2115 132 0 0 chr11 16596600 16596895 -134186658 - AluSc SINE Alu -12 297 3 1308 104 19 66 chr11 16596895 16597040 -134186513 - AluSx SINE Alu -178 134 1 1127 244 37 0 chr11 16598962 16599204 -134184349 + MIR SINE MIR 2 252 -10 375 269 211 6 chr11 16599214 16599370 -134184183 + MIR SINE MIR 49 236 -26 464 297 21 0 chr11 16599769 16599914 -134183639 + MIR3 SINE MIR 46 193 -15 387 328 162 35 chr11 16600034 16600324 -134183229 + L2 LINE L2 2062 2388 -926 796 251 176 23 chr11 16600334 16600725 -134182828 + L2 LINE L2 2805 3255 -58 240 362 23 23 chr11 16600856 16601030 -134182523 + L2 LINE L2 2489 2662 -652 189 329 131 44 chr11 16601074 16601211 -134182342 + L2 LINE L2 2234 2382 -932 533 340 105 40 chr11 16601299 16601844 -134181709 + L2 LINE L2 2669 3251 -21 308 333 99 0 chr11 16602542 16602598 -134180955 - MIR SINE MIR -55 207 158 327 65 0 0 chr11 16602598 16602644 -134180909 + (TG)n Simple_repeat Simple_repeat 2 47 0 308 333 99 0 chr11 16602644 16602728 -134180825 - MIR SINE MIR -104 158 53 598 338 130 25 chr11 16603810 16604210 -134179343 - LTR16A LTR ERVL 0 450 9 807 188 82 77 chr11 16604761 16604969 -134178584 + MER63A DNA MER1_type 1 209 -1 310 214 11 11 chr11 16605048 16605137 -134178416 + (TA)n Simple_repeat Simple_repeat 1 89 0 2237 142 89 2 chr11 16606092 16606486 -134177067 + MSTA LTR MaLR 1 428 0 205 333 0 29 chr11 16606488 16606557 -134176996 + MIR3 SINE MIR 90 156 -52 278 273 23 40 chr11 16606644 16606820 -134176733 + GA-rich Low_complexity Low_complexity 2 174 0 432 176 42 129 chr11 16606854 16607047 -134176506 - MER112 DNA MER1_type -84 176 1 1373 185 75 8 chr11 16607715 16608001 -134175552 - AluJo SINE Alu 0 304 1 2165 97 13 10 chr11 16608274 16608583 -134174970 + AluSg SINE Alu 1 310 0 260 314 57 0 chr11 16609029 16609099 -134174454 + L2 LINE L2 3139 3212 -60 2396 91 0 0 chr11 16609348 16609645 -134173908 + AluSx SINE Alu 1 297 -15 275 238 50 12 chr11 16609665 16609745 -134173808 + MIR SINE MIR 180 262 0 244 363 116 14 chr11 16610227 16610373 -134173180 - L2 LINE L2 -27 3286 3126 1562 273 114 60 chr11 16610711 16611746 -134171807 + L2 LINE L2 2204 3308 -5 26 30 0 0 chr11 16615259 16615292 -134168261 + AT_rich Low_complexity Low_complexity 1 33 0 373 312 74 32 chr11 16616415 16616604 -134166949 - MIR3 SINE MIR -6 202 6 32 43 0 0 chr11 16617542 16617588 -134165965 + AT_rich Low_complexity Low_complexity 1 46 0 947 163 33 0 chr11 16617597 16617750 -134165803 - FRAM SINE Alu -26 150 1 277 259 141 0 chr11 16619086 16619171 -134164382 - MIR SINE MIR -102 160 64 531 82 0 0 chr11 16619771 16619844 -134163709 + (TGGA)n Simple_repeat Simple_repeat 2 74 0 201 39 0 0 chr11 16619843 16619869 -134163684 + (GA)n Simple_repeat Simple_repeat 1 26 0 * 598 266 53 6 chr11 16619936 16620105 -134163448 + MER5B DNA MER1_type 1 177 -1 696 256 164 30 chr11 16620962 16621206 -134162347 + MER113 DNA MER1_type? 31 241 -280 369 43 0 0 chr11 16621206 16621253 -134162300 + (TC)n Simple_repeat Simple_repeat 2 48 0 696 256 164 30 chr11 16621253 16621411 -134162142 + MER113 DNA MER1_type? 241 487 -34 22 35 0 0 chr11 16624216 16624245 -134159308 + AT_rich Low_complexity Low_complexity 1 29 0 521 319 88 0 chr11 16624671 16624875 -134158678 + MIR SINE MIR 31 252 -10 825 217 38 19 chr11 16625357 16625569 -134157984 + MER20 DNA MER1_type 4 219 0 22 35 0 0 chr11 16626350 16626379 -134157174 + AT_rich Low_complexity Low_complexity 1 29 0 231 389 160 0 chr11 16628342 16628486 -134155067 + L2 LINE L2 3106 3272 0 415 230 40 32 chr11 16631249 16631375 -134152178 + MER94 DNA DNA 5 131 -3 227 267 89 22 chr11 16631414 16631504 -134152049 - MIR3 SINE MIR -24 184 89 186 43 0 0 chr11 16631695 16631718 -134151835 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 232 261 62 0 chr11 16632362 16632427 -134151126 + L2 LINE L2 3235 3303 -10 269 383 30 18 chr11 16633398 16633565 -134149988 + L3b LINE CR1 1269 1437 -146 388 368 0 30 chr11 16633682 16633815 -134149738 - L2 LINE L2 -5 3267 3139 1961 149 3 0 chr11 16633815 16634117 -134149436 + AluSx SINE Alu 1 303 -9 396 376 82 46 chr11 16634398 16634439 -134149114 - L2 LINE L2 -342 2972 2934 273 57 0 0 chr11 16634439 16634474 -134149079 + (TG)n Simple_repeat Simple_repeat 2 36 0 396 376 82 46 chr11 16634474 16634735 -134148818 - L2 LINE L2 -380 2934 2659 21 0 0 0 chr11 16635430 16635451 -134148102 + AT_rich Low_complexity Low_complexity 1 21 0 994 154 0 0 chr11 16635477 16635633 -134147920 - MER2 DNA MER2_type -135 210 55 1599 161 20 26 chr11 16636206 16636510 -134147043 + AluJo SINE Alu 1 302 -10 288 77 0 0 chr11 16636876 16636915 -134146638 + (T)n Simple_repeat Simple_repeat 1 39 0 27 49 0 0 chr11 16637774 16637815 -134145738 + AT_rich Low_complexity Low_complexity 1 41 0 871 224 0 0 chr11 16638252 16638426 -134145127 + FRAM SINE Alu 1 167 -9 282 277 129 0 chr11 16640218 16640358 -134143195 - MIR SINE MIR -64 144 26 217 393 35 14 chr11 16640583 16640728 -134142825 - MIR3 SINE MIR -41 167 20 864 259 53 0 chr11 16641139 16641382 -134142171 - MIR SINE MIR 0 262 7 2274 107 0 0 chr11 16641855 16642163 -134141390 - AluSx SINE Alu 0 312 5 1734 88 0 80 chr11 16643059 16643376 -134140177 - AluSq SINE Alu 0 328 34 259 280 15 76 chr11 16644426 16644558 -134138995 - MIR SINE MIR -134 128 5 216 232 29 58 chr11 16645785 16645854 -134137699 + L2 LINE L2 3230 3296 -17 2105 104 3 36 chr11 16645857 16646165 -134137388 + AluSx SINE Alu 1 298 -14 467 235 26 17 chr11 16646197 16646312 -134137241 + MER94 DNA DNA 10 125 -9 225 151 38 0 chr11 16646517 16646570 -134136983 + (TA)n Simple_repeat Simple_repeat 1 55 0 2816 10 0 0 chr11 16646656 16646966 -134136587 - AluYa5 SINE Alu -1 310 1 27 49 0 0 chr11 16646987 16647028 -134136525 + AT_rich Low_complexity Low_complexity 1 41 0 690 124 16 0 chr11 16649040 16649161 -134134392 + L1MA8 LINE L1 6169 6291 0 620 280 42 26 chr11 16649781 16649970 -134133583 - MIR3 SINE MIR -1 207 16 484 294 150 0 chr11 16650809 16650962 -134132591 + MIR3 SINE MIR 8 183 -25 691 256 135 9 chr11 16651492 16651722 -134131831 + MIR SINE MIR 3 261 -1 226 287 90 25 chr11 16651915 16652037 -134131516 + L2 LINE L2 2715 2844 -470 235 280 11 11 chr11 16652229 16652322 -134131231 + L1ME LINE L1 5717 5809 -353 2323 67 27 0 chr11 16652354 16652654 -134130899 + AluY SINE Alu 1 308 -3 329 296 112 0 chr11 16652654 16652752 -134130801 - L2 LINE L2 -1 3312 3204 29 28 0 0 chr11 16652807 16652843 -134130710 + AT_rich Low_complexity Low_complexity 1 36 0 829 183 0 0 chr11 16653371 16653513 -134130040 + Charlie1a DNA MER1_type 72 213 -1242 2389 184 108 19 chr11 16653531 16654372 -134129181 + Charlie1a DNA MER1_type 461 1455 0 1674 169 10 3 chr11 16654507 16654802 -134128751 + AluSx SINE Alu 1 297 -15 328 351 15 22 chr11 16654875 16655009 -134128544 + MIR SINE MIR 48 180 -82 3265 137 21 14 chr11 16655036 16655604 -134127949 + L1MB8 LINE L1 5505 6076 -102 1124 314 66 35 chr11 16655806 16656454 -134127099 - L2 LINE L2 -72 3241 2570 550 289 47 33 chr11 16656454 16656665 -134126888 - LTR33 LTR ERVL -30 491 278 525 327 96 19 chr11 16656691 16656899 -134126654 - LTR33 LTR ERVL -297 224 1 562 271 90 12 chr11 16656901 16657067 -134126486 - L2 LINE L2 -841 2473 2295 21 100 0 0 chr11 16657441 16657511 -134126042 + AT_rich Low_complexity Low_complexity 1 70 0 624 265 176 43 chr11 16657531 16657836 -134125717 - L1ME LINE L1 -367 5754 5413 845 227 30 5 chr11 16659039 16659242 -134124311 + MER3 DNA MER1_type 2 209 0 2248 106 0 0 chr11 16659781 16660082 -134123471 - AluSg SINE Alu -9 301 1 197 95 0 24 chr11 16660878 16660920 -134122633 + (TTTTTG)n Simple_repeat Simple_repeat 4 44 0 521 342 78 8 chr11 16660994 16661237 -134122316 + MIR SINE MIR 3 262 0 209 298 0 0 chr11 16661338 16661395 -134122158 + L2 LINE L2 3255 3311 -2 226 261 14 29 chr11 16661404 16661473 -134122080 + L3 LINE CR1 1497 1564 -13 216 255 35 103 chr11 16665711 16665856 -134117697 - MIR SINE MIR -28 234 100 4767 185 98 38 chr11 16666096 16667296 -134116257 + Charlie1a DNA MER1_type 1 1271 -184 644 202 0 0 chr11 16667299 16667413 -134116140 - AluJo SINE Alu -64 248 135 731 179 0 15 chr11 16667414 16667548 -134116005 - AluJo SINE Alu -170 132 1 447 173 115 32 chr11 16667558 16667714 -134115839 + Charlie1a DNA MER1_type 1282 1450 -5 24 0 0 0 chr11 16667938 16667962 -134115591 + AT_rich Low_complexity Low_complexity 1 24 0 328 366 23 0 chr11 16669881 16670012 -134113541 + MIR3 SINE MIR 75 208 0 28 61 0 0 chr11 16670155 16670204 -134113349 + AT_rich Low_complexity Low_complexity 1 49 0 219 36 0 0 chr11 16671354 16671382 -134112171 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 326 335 77 0 chr11 16672025 16672180 -134111373 + MIR SINE MIR 47 213 -49 228 282 28 14 chr11 16672300 16672371 -134111182 - L3 LINE CR1 -23 1554 1483 180 39 0 0 chr11 16672431 16672457 -134111096 - L2 LINE L2 0 3313 3288 862 191 66 0 chr11 16672475 16672627 -134110926 - AluJb SINE Alu -19 293 132 201 146 24 49 chr11 16672627 16672668 -134110885 - L2 LINE L2 -11 3302 3263 297 331 52 64 chr11 16672830 16672950 -134110603 - L3 LINE CR1 -364 1213 1094 2221 110 0 0 chr11 16672950 16673249 -134110304 + AluSx SINE Alu 1 299 -13 297 331 52 64 chr11 16673249 16673300 -134110253 - L3 LINE CR1 -483 1094 1044 23 78 0 0 chr11 16673326 16673377 -134110176 + AT_rich Low_complexity Low_complexity 1 51 0 1509 199 10 3 chr11 16673519 16673825 -134109728 + L1MA9 LINE L1 5967 6274 -38 21 71 0 0 chr11 16674005 16674047 -134109506 + AT_rich Low_complexity Low_complexity 1 42 0 508 276 115 56 chr11 16674262 16674672 -134108881 + L1ME4a LINE L1 2924 3357 -2789 359 265 103 47 chr11 16675436 16675670 -134107883 + L1ME4a LINE L1 4279 4525 -1621 252 352 51 21 chr11 16675806 16676138 -134107415 + L1ME4a LINE L1 4717 5058 -1088 825 290 109 39 chr11 16676285 16677089 -134106464 + L1ME4a LINE L1 5258 6118 -3 706 206 60 112 chr11 16678609 16678761 -134104792 - MIR SINE MIR 0 262 128 2200 114 3 0 chr11 16678761 16679069 -134104484 + AluSc SINE Alu 1 309 0 706 206 60 112 chr11 16679069 16679183 -134104370 - MIR SINE MIR -134 128 10 23 33 0 0 chr11 16679726 16679756 -134103797 + AT_rich Low_complexity Low_complexity 1 30 0 195 100 0 0 chr11 16681125 16681155 -134102398 + (TTCC)n Simple_repeat Simple_repeat 3 32 0 25 51 0 0 chr11 16682749 16682788 -134100765 + AT_rich Low_complexity Low_complexity 1 39 0 21 36 0 0 chr11 16683157 16683185 -134100368 + AT_rich Low_complexity Low_complexity 1 28 0 207 100 0 0 chr11 16684329 16684359 -134099194 + (TC)n Simple_repeat Simple_repeat 1 30 0 369 0 0 0 chr11 16685305 16685346 -134098207 + (TG)n Simple_repeat Simple_repeat 1 41 0 322 295 50 36 chr11 16685766 16685905 -134097648 - MIR3 SINE MIR -19 189 49 390 248 110 97 chr11 16686735 16687045 -134096508 + MLT1K LTR MaLR 263 576 -12 1851 163 77 6 chr11 16687173 16687498 -134096055 + MER7A DNA MER2_type 1 346 0 231 224 35 94 chr11 16688184 16688269 -134095284 - MIR SINE MIR -3 259 180 190 281 67 79 chr11 16688377 16688466 -134095087 + L2 LINE L2 3158 3245 -27 2867 224 42 33 chr11 16688549 16689343 -134094210 - L1ME2 LINE L1 -9 6224 5424 2098 268 36 8 chr11 16689366 16689777 -134093776 - L1ME2 LINE L1 -890 5325 4886 237 83 0 0 chr11 16689777 16689813 -134093740 + (TG)n Simple_repeat Simple_repeat 2 37 0 2098 268 36 8 chr11 16689813 16690072 -134093481 - L1ME2 LINE L1 -1329 4886 4636 2988 231 74 20 chr11 16690083 16691755 -134091798 - L1ME2 LINE L1 -3116 3099 1370 26 30 0 0 chr11 16691764 16691797 -134091756 + AT_rich Low_complexity Low_complexity 1 33 0 3106 173 28 16 chr11 16691797 16692439 -134091114 - L1MA3 LINE L1 0 6305 5656 2320 112 38 16 chr11 16692439 16692806 -134090747 - THE1C LTR MaLR 0 375 1 10418 111 28 12 chr11 16692806 16693845 -134089708 - THE1C-int LTR MaLR 0 1580 508 2085 116 13 19 chr11 16693845 16694155 -134089398 + AluSc SINE Alu 1 308 -1 10418 111 28 12 chr11 16694155 16694670 -134088883 - THE1C-int LTR MaLR -1072 508 2 548 325 22 4 chr11 16694730 16694958 -134088595 - L1ME2 LINE L1 -6145 251 20 246 150 0 0 chr11 16695089 16695129 -134088424 + Charlie3 DNA MER1_type 1 40 -2670 227 207 46 81 chr11 16695124 16695211 -134088342 - Charlie3 DNA MER1_type -2394 316 233 * 739 189 0 0 chr11 16695140 16695262 -134088291 + Charlie3 DNA MER1_type 134 255 -2455 3039 263 149 17 chr11 16695366 16697202 -134086351 + L1ME3 LINE L1 2187 4238 -1977 * 11045 195 61 28 chr11 16697197 16698095 -134085458 + L1MC1 LINE L1 4 871 -5742 2155 114 0 3 chr11 16698095 16698393 -134085160 + AluSp SINE Alu 1 297 -16 11045 195 61 28 chr11 16698393 16701743 -134081810 + L1MC1 LINE L1 871 4528 -2085 203 0 37 0 chr11 16701743 16701770 -134081783 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 11045 195 61 28 chr11 16701770 16703850 -134079703 + L1MC1 LINE L1 4528 6538 -75 419 224 9 0 chr11 16703852 16703959 -134079594 + (TA)n Simple_repeat Simple_repeat 2 109 0 389 146 37 0 chr11 16703960 16704042 -134079511 + L1MC2 LINE L1 6260 6344 0 996 238 110 23 chr11 16704045 16704718 -134078835 + L1ME3 LINE L1 4248 5990 -243 850 217 16 68 chr11 16704818 16705067 -134078486 + L1ME3 LINE L1 5989 6224 -7 261 0 0 0 chr11 16705077 16705106 -134078447 + (TG)n Simple_repeat Simple_repeat 2 30 0 209 189 0 0 chr11 16705106 16705143 -134078410 + (CATATA)n Simple_repeat Simple_repeat 4 40 0 2156 87 7 3 chr11 16705143 16705429 -134078124 - AluY SINE Alu -22 289 3 618 320 43 68 chr11 16705900 16706410 -134077143 + L2 LINE L2 2756 3271 -1 220 239 0 0 chr11 16708272 16708318 -134075235 + (TAA)n Simple_repeat Simple_repeat 3 48 0 378 245 49 0 chr11 16708891 16708993 -134074560 - L1MC4 LINE L1 -14 8028 7922 2701 255 72 20 chr11 16709017 16709934 -134073619 - L1MC4a LINE L1 -1432 6376 5412 5512 229 47 23 chr11 16709945 16713454 -134070099 + L1MA7 LINE L1 44 6349 -11 773 200 27 85 chr11 16713527 16713787 -134069766 + L1MB4 LINE L1 2329 2573 -3573 1183 292 65 56 chr11 16713812 16715175 -134068378 - L1MC4a LINE L1 -751 5395 4020 4284 178 35 20 chr11 16715220 16715770 -134067783 + L1MB4 LINE L1 5239 5808 -372 246 32 0 0 chr11 16715770 16715801 -134067752 + (CA)n Simple_repeat Simple_repeat 2 32 0 4284 178 35 20 chr11 16715801 16716179 -134067374 + L1MB4 LINE L1 5808 6179 -1 461 304 68 32 chr11 16716203 16717189 -134066364 - L1MC4a LINE L1 -2182 3964 2933 1983 243 58 64 chr11 16718786 16719634 -134063919 + HAL1b LINE L1 469 1311 -37 231 267 23 23 chr11 16720155 16720241 -134063312 + L1MC5 LINE L1 7832 7917 -44 1815 75 0 56 chr11 16720329 16720596 -134062957 + AluY SINE Alu 39 290 -21 216 0 0 0 chr11 16720599 16720623 -134062930 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 311 352 9 0 chr11 16721176 16721281 -134062272 - MIR SINE MIR -125 137 32 232 258 0 48 chr11 16721530 16721592 -134061961 + LTR67 LTR ERVL 99 157 -400 * 319 256 30 58 chr11 16721547 16721651 -134061902 + MLT1L LTR MaLR 111 276 -310 237 262 63 19 chr11 16721812 16721926 -134061627 + MLT1J LTR MaLR 384 584 -31 214 315 68 14 chr11 16722041 16722114 -134061439 + MIR SINE MIR 172 248 -14 1604 191 16 55 chr11 16722255 16722638 -134060915 + MLT1A2 LTR MaLR 1 368 -6 564 317 122 5 chr11 16722933 16723154 -134060399 + MIR SINE MIR 5 251 -11 228 122 0 0 chr11 16727099 16727140 -134056413 + (TA)n Simple_repeat Simple_repeat 2 42 0 25 51 0 0 chr11 16727369 16727408 -134056145 + AT_rich Low_complexity Low_complexity 1 39 0 26 50 0 0 chr11 16727790 16727830 -134055723 + AT_rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chr11 16727958 16727979 -134055574 + AT_rich Low_complexity Low_complexity 1 21 0 479 84 42 0 chr11 16728152 16728247 -134055306 + (TA)n Simple_repeat Simple_repeat 1 99 0 32 43 0 0 chr11 16728438 16728484 -134055069 + AT_rich Low_complexity Low_complexity 1 46 0 517 320 13 7 chr11 16729658 16729808 -134053745 - L2 LINE L2 0 3272 3122 21 0 0 0 chr11 16730141 16730162 -134053391 + AT_rich Low_complexity Low_complexity 1 21 0 2095 109 0 3 chr11 16730386 16730670 -134052883 + AluSp SINE Alu 4 286 -27 27 62 0 0 chr11 16730674 16730722 -134052831 + AT_rich Low_complexity Low_complexity 1 48 0 278 281 16 0 chr11 16730743 16730807 -134052746 + L2 LINE L2 3208 3272 0 369 204 0 34 chr11 16732012 16732100 -134051453 + L1MC5 LINE L1 7831 7915 -46 440 18 18 0 chr11 16732375 16732432 -134051121 + (TC)n Simple_repeat Simple_repeat 1 58 0 279 0 0 0 chr11 16732431 16732462 -134051091 + (CA)n Simple_repeat Simple_repeat 1 31 0 * 438 36 0 0 chr11 16736354 16736410 -134047143 + (TA)n Simple_repeat Simple_repeat 1 56 0 378 235 0 0 chr11 16736488 16736590 -134046963 + (TGAA)n Simple_repeat Simple_repeat 3 104 0 22 80 0 0 chr11 16742142 16742192 -134041361 + AT_rich Low_complexity Low_complexity 1 50 0 854 201 69 0 chr11 16746545 16746719 -134036834 - MER5A DNA MER1_type -3 186 1 455 338 187 19 chr11 16746963 16747620 -134035933 + L2 LINE L2 2260 3029 -243 2057 132 3 0 chr11 16747690 16748001 -134035552 - AluSx SINE Alu 0 312 1 909 266 22 62 chr11 16748253 16748472 -134035081 - L1M4 LINE L1 -1554 4592 4366 2029 130 3 3 chr11 16748472 16748787 -134034766 - AluSx SINE Alu 0 315 1 909 266 22 62 chr11 16748787 16748821 -134034732 - L1M4 LINE L1 -1780 4366 4332 1677 178 24 68 chr11 16748821 16749203 -134034350 + MLT1A1 LTR MaLR 1 365 0 909 266 22 62 chr11 16749203 16749299 -134034254 - L1M4 LINE L1 -1814 4332 4256 192 77 0 0 chr11 16749299 16749325 -134034228 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 909 266 22 62 chr11 16749325 16749374 -134034179 - L1M4 LINE L1 -1890 4256 4207 * 4686 209 24 38 chr11 16749370 16750884 -134032669 + L1MD2 LINE L1 4872 6358 -1 2266 110 0 3 chr11 16751185 16751495 -134032058 - AluSc SINE Alu 0 309 1 250 398 24 0 chr11 16752940 16753063 -134030490 - MIR3 SINE MIR -37 171 46 610 257 75 50 chr11 16753721 16754040 -134029513 + L1ME3A LINE L1 5627 5953 -217 240 235 0 0 chr11 16755840 16755891 -134027662 + (TAA)n Simple_repeat Simple_repeat 2 52 0 548 244 55 0 chr11 16755906 16756033 -134027520 - MIR SINE MIR -57 205 72 771 276 45 12 chr11 16756043 16756286 -134027267 - MIR SINE MIR -11 251 1 201 264 0 0 chr11 16757527 16757580 -134025973 + (TCTA)n Simple_repeat Simple_repeat 4 56 0 338 350 90 52 chr11 16758258 16758781 -134024772 + L2 LINE L2 2306 2848 -466 241 346 69 8 chr11 16758833 16758963 -134024590 + L2 LINE L2 2933 3070 -202 1633 200 67 24 chr11 16759182 16759504 -134024049 + Charlie4a DNA MER1_type 24 375 -1586 1892 102 64 4 chr11 16759504 16759790 -134023763 - AluSc SINE Alu 0 302 1 1633 200 67 24 chr11 16759790 16759931 -134023622 + Charlie4a DNA MER1_type 375 508 0 1699 338 40 28 chr11 16760106 16760920 -134022633 - L3 LINE CR1 -78 1499 676 28 29 0 0 chr11 16760938 16760973 -134022580 + AT_rich Low_complexity Low_complexity 1 35 0 21 71 0 0 chr11 16761805 16761847 -134021706 + AT_rich Low_complexity Low_complexity 1 42 0 24 67 0 0 chr11 16762590 16762635 -134020918 + AT_rich Low_complexity Low_complexity 1 45 0 29 0 0 0 chr11 16763330 16763359 -134020194 + AT_rich Low_complexity Low_complexity 1 29 0 3716 40 44 4 chr11 16763934 16764412 -134019141 - L1PA5 LINE L1 0 6154 5658 206 301 0 78 chr11 16765059 16765162 -134018391 + MIR SINE MIR 168 262 0 475 146 0 0 chr11 16765282 16765364 -134018189 + L1MB8 LINE L1 6088 6169 -9 200 267 67 0 chr11 16765397 16765457 -134018096 + L2 LINE L2 3200 3263 -9 2229 115 142 5 chr11 16766733 16767106 -134016447 + MSTA LTR MaLR 1 424 -4 308 274 143 24 chr11 16767196 16767364 -134016189 - MER5A DNA MER1_type -1 188 1 276 339 48 0 chr11 16768080 16768204 -134015349 + L2 LINE L2 2926 3055 -217 1606 195 3 10 chr11 16768474 16768787 -134014766 + AluJo SINE Alu 1 311 -1 330 339 6 12 chr11 16768943 16769111 -134014442 + L1ME4a LINE L1 5708 5874 -247 635 125 8 33 chr11 16769143 16769263 -134014290 - L1MA5 LINE L1 0 6300 6184 1671 159 79 3 chr11 16769264 16769579 -134013974 + L1MA4 LINE L1 5750 6088 -212 287 221 148 27 chr11 16769595 16769744 -134013809 + L1ME4a LINE L1 5955 6121 0 359 284 74 45 chr11 16769812 16770055 -134013498 + L1ME4a LINE L1 5870 6119 -2 680 318 70 37 chr11 16770241 16770304 -134013249 - L3 LINE CR1 -170 1407 1347 1506 135 69 101 chr11 16770304 16770681 -134012872 + MLT1A1 LTR MaLR 1 365 0 680 318 70 37 chr11 16770681 16770991 -134012562 - L3 LINE CR1 -230 1347 1022 854 276 71 77 chr11 16771253 16771785 -134011768 - MLT1F1 LTR MaLR 0 567 39 323 257 129 0 chr11 16771787 16771888 -134011665 + MIR SINE MIR 149 262 0 1379 248 13 6 chr11 16772608 16772922 -134010631 + MER90 LTR ERV1 297 612 -2 310 261 42 8 chr11 16772922 16773028 -134010525 + MER97c DNA MER1_type? 59 168 -922 880 266 23 53 chr11 16774058 16774321 -134009232 + MIR SINE MIR 6 260 -2 781 298 172 25 chr11 16774319 16774715 -134008838 - L3 LINE CR1 -82 1495 1042 * 2070 118 0 10 chr11 16774844 16775150 -134008403 + AluSx SINE Alu 1 303 -9 512 315 67 6 chr11 16775295 16775473 -134008080 - MIR3 SINE MIR -1 207 19 2311 105 0 0 chr11 16779006 16779301 -134004252 - AluSx SINE Alu -17 295 1 1066 294 113 36 chr11 16780945 16781725 -134001828 + L2 LINE L2 2457 3288 -25 189 74 0 0 chr11 16782923 16782950 -134000603 + (CA)n Simple_repeat Simple_repeat 2 28 0 22 0 0 0 chr11 16783397 16783419 -134000134 + AT_rich Low_complexity Low_complexity 1 22 0 780 340 84 22 chr11 16783621 16784350 -133999203 + L2 LINE L2 2529 3312 -1 188 196 0 20 chr11 16792586 16792637 -133990916 + GA-rich Low_complexity Low_complexity 3 52 0 22 70 0 0 chr11 16793083 16793126 -133990427 + AT_rich Low_complexity Low_complexity 1 43 0 1983 148 7 0 chr11 16793909 16794214 -133989339 + AluSx SINE Alu 1 307 -5 1099 59 7 7 chr11 16794228 16794381 -133989172 + (GGAA)n Simple_repeat Simple_repeat 2 154 0 484 226 21 0 chr11 16795394 16795487 -133988066 + L2 LINE L2 3197 3291 -22 205 387 45 18 chr11 16796485 16796596 -133986957 + L2 LINE L2 3144 3257 -15 524 121 11 0 chr11 16796831 16796922 -133986631 + (TGGA)n Simple_repeat Simple_repeat 3 94 0 678 269 15 92 chr11 16796946 16797206 -133986347 - MIR SINE MIR -4 258 19 23 54 0 0 chr11 16797227 16797264 -133986289 + AT_rich Low_complexity Low_complexity 1 37 0 403 299 116 6 chr11 16798716 16798880 -133984673 + MIR SINE MIR 71 252 -10 211 136 114 0 chr11 16803351 16803395 -133980158 + MIR SINE MIR 98 146 -62 408 347 89 79 chr11 16803511 16804066 -133979487 - L2 LINE L2 -1 3271 2709 726 252 60 17 chr11 16804419 16804653 -133978900 - MIR SINE MIR -16 246 3 464 369 95 0 chr11 16804664 16804843 -133978710 - MIR SINE MIR -12 250 55 186 306 83 28 chr11 16804896 16805004 -133978549 + L2 LINE L2 2937 3050 -222 207 271 83 52 chr11 16805202 16805298 -133978255 + L2 LINE L2 3168 3266 -6 2341 94 0 0 chr11 16805329 16805637 -133977916 + AluY SINE Alu 1 308 -3 661 255 21 37 chr11 16805698 16805886 -133977667 - MIR SINE MIR -73 189 5 218 318 129 41 chr11 16806526 16806696 -133976857 - MIR SINE MIR -15 247 63 428 211 128 9 chr11 16807612 16807721 -133975832 - L2 LINE L2 0 3313 3192 207 298 0 0 chr11 16807720 16807767 -133975786 + L3 LINE CR1 1520 1566 -11 * 223 227 182 30 chr11 16807820 16807886 -133975667 + L2 LINE L2 3196 3271 -1 1041 165 80 31 chr11 16807900 16808124 -133975429 + MER46A DNA MER2_type 2 236 0 548 320 23 6 chr11 16808418 16808590 -133974963 - MIR3 SINE MIR -31 177 3 456 236 37 47 chr11 16809065 16809230 -133974323 + MIR SINE MIR 2 172 -62 299 297 164 23 chr11 16809398 16809526 -133974027 + MIR SINE MIR 2 147 -115 1801 158 48 6 chr11 16809579 16809895 -133973658 + MER44D DNA MER2_type 11 609 0 336 127 0 0 chr11 16809895 16809950 -133973603 + (TG)n Simple_repeat Simple_repeat 2 56 0 22 56 0 0 chr11 16809961 16809997 -133973556 + AT_rich Low_complexity Low_complexity 1 36 0 241 260 220 20 chr11 16811047 16811197 -133972356 - MIR SINE MIR -70 192 13 911 207 62 0 chr11 16812500 16812693 -133970860 - MER6B DNA MER2_type -4 206 2 1298 175 0 0 chr11 16812892 16813098 -133970455 + AluJb SINE Alu 82 287 -25 1527 184 85 14 chr11 16813120 16813565 -133969988 + L1ME4a LINE L1 4890 5366 -780 689 181 49 7 chr11 16813565 16813709 -133969844 + BC200 scRNA scRNA 1 150 -50 636 169 39 8 chr11 16813711 16813841 -133969712 + L1ME4a LINE L1 5361 5494 -680 522 316 125 8 chr11 16813842 16814098 -133969455 + L2 LINE L2 2970 3255 -58 575 264 119 34 chr11 16814333 16814897 -133968656 + LTR50 LTR ERVL 1 683 -112 2882 234 30 30 chr11 16815206 16816228 -133967325 + L2 LINE L2 2292 3308 -5 789 159 38 0 chr11 16816391 16816523 -133967030 - Tigger4(Zombi) DNA MER2_type -2594 137 1 247 257 0 14 chr11 16816523 16816593 -133966960 + MIR SINE MIR 194 262 0 871 140 0 7 chr11 16818414 16818564 -133964989 + (GGAA)n Simple_repeat Simple_repeat 1 149 0 413 257 0 80 chr11 16819947 16820060 -133963493 - MIR SINE MIR -69 139 36 3924 51 12 0 chr11 16820301 16820793 -133962760 + L1PA7 LINE L1 5649 6146 -8 286 216 20 49 chr11 16821466 16821568 -133961985 + GA-rich Low_complexity Low_complexity 4 102 0 662 266 61 5 chr11 16822529 16822743 -133960810 + L1ME4a LINE L1 5531 5756 -365 336 120 20 0 chr11 16822765 16822815 -133960738 - L2 LINE L2 -3 3269 3219 283 258 7 80 chr11 16822882 16823033 -133960520 + L1ME4a LINE L1 4564 4703 -1443 22 35 0 0 chr11 16823256 16823285 -133960268 + AT_rich Low_complexity Low_complexity 1 29 0 799 234 22 63 chr11 16823523 16823745 -133959808 - MIR SINE MIR -27 235 23 1257 261 77 31 chr11 16823751 16823795 -133959758 + L1ME4a LINE L1 5327 5368 -753 2186 114 3 0 chr11 16823795 16824094 -133959459 + AluSp SINE Alu 1 300 -13 1257 261 77 31 chr11 16824094 16824645 -133958908 + L1ME4a LINE L1 5368 5943 -178 351 264 169 20 chr11 16824826 16825080 -133958473 + L1ME4a LINE L1 5830 6121 0 269 313 38 0 chr11 16825531 16825611 -133957942 + MIR SINE MIR 57 139 -123 318 188 47 0 chr11 16827438 16827502 -133956051 - MIR SINE MIR -182 80 14 687 287 70 3 chr11 16828043 16828243 -133955310 + MIR SINE MIR 42 250 -12 213 304 78 26 chr11 16828258 16828373 -133955180 + MIR SINE MIR 136 256 -6 236 235 24 35 chr11 16828738 16828823 -133954730 + L1ME4a LINE L1 5985 6068 -53 220 336 47 62 chr11 16829696 16829825 -133953728 - MIR SINE MIR -96 112 35 353 362 104 26 chr11 16830968 16831523 -133952030 + L2 LINE L2 2681 3233 -39 628 222 40 45 chr11 16831721 16831897 -133951656 - MER5B DNA MER1_type 0 178 4 25 51 0 0 chr11 16832341 16832380 -133951173 + AT_rich Low_complexity Low_complexity 1 39 0 2795 244 95 5 chr11 16832504 16833378 -133950175 - L1M4 LINE L1 -1945 4201 3249 895 209 97 81 chr11 16833410 16833692 -133949861 - L1MDa LINE L1 -4821 1259 966 1606 174 10 23 chr11 16833692 16833996 -133949557 - AluJo SINE Alu -12 300 1 895 209 97 81 chr11 16833996 16834168 -133949385 - L1MDa LINE L1 -5114 966 798 1304 267 112 41 chr11 16834174 16834298 -133949255 - L1MDa LINE L1 -5408 662 548 2467 67 0 6 chr11 16834298 16834611 -133948942 + AluY SINE Alu 1 311 0 1304 267 112 41 chr11 16834611 16835051 -133948502 - L1MDa LINE L1 -5522 548 58 501 323 113 60 chr11 16835141 16835296 -133948257 + L2 LINE L2 2901 3046 -226 4998 77 6 0 chr11 16835296 16835960 -133947593 + L1PA7 LINE L1 5485 6152 -2 501 323 113 60 chr11 16835960 16836157 -133947396 + L2 LINE L2 3046 3272 0 283 279 184 0 chr11 16836563 16836699 -133946854 + L1MC4a LINE L1 5725 5885 -1923 301 200 0 0 chr11 16836919 16836974 -133946579 - L2 LINE L2 -2 3311 3257 493 352 68 8 chr11 16837601 16837851 -133945702 - L3 LINE CR1 -127 1450 1186 246 253 0 101 chr11 16838622 16838701 -133944852 + MIR SINE MIR 112 182 -80 700 337 97 31 chr11 16839755 16840280 -133943273 - L2 LINE L2 -11 3302 2748 225 203 241 13 chr11 16840795 16840874 -133942679 + MIR SINE MIR 166 262 0 202 194 0 0 chr11 16841004 16841040 -133942513 + (CA)n Simple_repeat Simple_repeat 1 36 0 22 35 0 0 chr11 16841653 16841682 -133941871 + AT_rich Low_complexity Low_complexity 1 29 0 28 29 0 0 chr11 16841835 16841870 -133941683 + AT_rich Low_complexity Low_complexity 1 35 0 212 342 13 13 chr11 16842662 16842741 -133940812 + MER5A DNA MER1_type 7 85 -104 199 203 0 119 chr11 16842741 16842800 -133940753 + MER5A DNA MER1_type 138 189 0 29 60 0 0 chr11 16843494 16843544 -133940009 + AT_rich Low_complexity Low_complexity 1 50 0 500 268 24 71 chr11 16843610 16843836 -133939717 + MIR SINE MIR 6 216 -46 293 45 0 23 chr11 16843944 16843988 -133939565 + (TTTTA)n Simple_repeat Simple_repeat 1 43 0 672 186 0 9 chr11 16843989 16844102 -133939451 - FRAM SINE Alu -30 146 35 844 277 39 32 chr11 16844678 16844988 -133938565 - L2 LINE L2 -7 3306 2995 370 202 172 17 chr11 16845096 16845278 -133938275 + L1ME4a LINE L1 5716 5935 -186 436 293 0 0 chr11 16845281 16845387 -133938166 - L2 LINE L2 -1 3312 3207 339 357 23 0 chr11 16846169 16846298 -133937255 + MIR3 SINE MIR 67 198 -10 190 0 32 32 chr11 16846723 16846754 -133936799 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 33 25 0 0 chr11 16848453 16848493 -133935060 + AT_rich Low_complexity Low_complexity 1 40 0 870 255 213 25 chr11 16850929 16851351 -133932202 - MLT1H LTR MaLR -25 521 32 701 176 0 16 chr11 16852759 16852884 -133930669 - FLAM_A SINE Alu -10 132 10 435 254 117 19 chr11 16853529 16853785 -133929768 + L1M4 LINE L1 3632 3912 -2234 900 141 5 49 chr11 16853943 16854128 -133929425 + L1MA7 LINE L1 5877 6053 -238 462 148 67 104 chr11 16854129 16854264 -133929289 + L1MA7 LINE L1 6161 6290 -1 27 0 0 0 chr11 16854300 16854327 -133929226 + AT_rich Low_complexity Low_complexity 1 27 0 1851 171 0 7 chr11 16854527 16854832 -133928721 + AluJb SINE Alu 1 303 -9 183 80 0 0 chr11 16855037 16855062 -133928491 + (A)n Simple_repeat Simple_repeat 1 25 0 23 0 0 0 chr11 16856518 16856541 -133927012 + AT_rich Low_complexity Low_complexity 1 23 0 607 206 8 23 chr11 16856545 16856676 -133926877 + FLAM_A SINE Alu 1 129 -4 879 238 98 7 chr11 16856683 16856991 -133926562 - MLT1K LTR MaLR -48 540 176 2407 78 3 0 chr11 16857566 16857873 -133925680 - AluSq SINE Alu -5 308 1 231 294 105 49 chr11 16858101 16858244 -133925309 - L2 LINE L2 -3 3269 3119 2315 116 20 67 chr11 16859314 16859762 -133923791 + L1MA5 LINE L1 5870 6296 -4 324 157 0 0 chr11 16860761 16860812 -133922741 - L2 LINE L2 -2 3311 3261 23 0 0 0 chr11 16863577 16863600 -133919953 + AT_rich Low_complexity Low_complexity 1 23 0 436 271 83 38 chr11 16866666 16866799 -133916754 + MER91A DNA MER1_type 12 150 -46 1034 309 57 28 chr11 16866903 16867421 -133916132 + L2 LINE L2 2559 3088 -225 186 103 0 0 chr11 16867417 16867446 -133916107 + L2 LINE L2 3285 3313 0 * 357 319 0 11 chr11 16867491 16867585 -133915968 + L2 LINE L2 3221 3313 0 237 371 131 24 chr11 16867604 16868304 -133915249 - L2 LINE L2 -834 2480 1706 253 347 20 0 chr11 16868448 16868546 -133915007 - MIR SINE MIR -66 142 43 258 281 31 16 chr11 16869308 16869372 -133914181 + MIR SINE MIR 14 78 -184 * 514 208 42 0 chr11 16869365 16869461 -133914092 - L2 LINE L2 0 3313 3214 3108 170 7 12 chr11 16869461 16870026 -133913527 + L1PA13 LINE L1 4084 4645 -1501 1516 81 0 5 chr11 16870026 16870223 -133913330 + AluY SINE Alu 1 196 -115 956 203 0 0 chr11 16870325 16870512 -133913041 + AluY SINE Alu 125 311 0 3814 154 7 28 chr11 16870518 16870859 -133912694 + L1PA13 LINE L1 4631 4978 -1168 2795 3 0 0 chr11 16870859 16871163 -133912390 + AluYa5 SINE Alu 1 304 -7 3814 154 7 28 chr11 16871163 16871543 -133912010 + L1PA13 LINE L1 4978 5337 -809 7619 30 10 0 chr11 16871643 16873050 -133910503 - L1PA4 LINE L1 -296 5859 4441 5742 92 16 4 chr11 16873037 16873853 -133909700 + L1PA13 LINE L1 5336 6161 -2 * 487 252 69 8 chr11 16873931 16874062 -133909491 + MIR SINE MIR 64 202 -60 306 327 19 82 chr11 16874085 16874293 -133909260 + L2 LINE L2 2861 3055 -217 206 225 0 0 chr11 16874340 16874380 -133909173 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 955 230 148 89 chr11 16874380 16874427 -133909126 + L2 LINE L2 2584 2627 -686 1951 176 17 6 chr11 16874427 16874786 -133908767 + MLT1A1 LTR MaLR 3 365 0 955 230 148 89 chr11 16874786 16875401 -133908152 + L2 LINE L2 2627 3286 -27 23 33 0 0 chr11 16876474 16876504 -133907049 + AT_rich Low_complexity Low_complexity 1 30 0 402 258 62 16 chr11 16876629 16876757 -133906796 - MER5A DNA MER1_type 0 189 56 26 0 0 0 chr11 16878106 16878132 -133905421 + AT_rich Low_complexity Low_complexity 1 26 0 200 329 55 0 chr11 16878387 16878460 -133905093 - L2 LINE L2 -39 3274 3198 305 288 88 44 chr11 16878597 16878757 -133904796 + L2 LINE L2 3147 3313 0 22 35 0 0 chr11 16878867 16878896 -133904657 + AT_rich Low_complexity Low_complexity 1 29 0 1047 127 34 54 chr11 16879528 16879733 -133903820 + MLT1C LTR MaLR 267 467 0 195 323 121 46 chr11 16879836 16880136 -133903417 + L2 LINE L2 1635 1911 -1403 373 175 29 39 chr11 16880136 16880239 -133903314 + L1PA5 LINE L1 6052 6153 -1 195 323 121 46 chr11 16880239 16880542 -133903011 + L2 LINE L2 1911 2283 -1031 791 302 28 20 chr11 16880549 16880797 -133902756 + MIR SINE MIR 1 250 -12 1209 191 24 65 chr11 16880993 16881287 -133902266 + AluJo SINE Alu 1 282 -30 22 0 0 0 chr11 16881287 16881309 -133902244 + AT_rich Low_complexity Low_complexity 1 22 0 313 316 123 9 chr11 16881411 16881525 -133902028 + L2 LINE L2 3145 3271 -1 339 224 26 0 chr11 16881671 16881747 -133901806 - MIR SINE MIR -6 256 179 * 692 276 14 19 chr11 16881725 16881939 -133901614 + MIR SINE MIR 49 261 -1 258 152 0 0 chr11 16882134 16882180 -133901373 + MER4B-int LTR ERV1 1146 1191 -5567 21 0 0 0 chr11 16882205 16882226 -133901327 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr11 16885277 16885314 -133898239 + AT_rich Low_complexity Low_complexity 1 37 0 33 43 0 0 chr11 16886543 16886590 -133896963 + AT_rich Low_complexity Low_complexity 1 47 0 210 399 63 18 chr11 16886996 16887219 -133896334 + L2 LINE L2 2838 3070 -202 191 222 0 0 chr11 16887370 16887415 -133896138 + L2 LINE L2 3228 3272 0 218 298 18 0 chr11 16887450 16887507 -133896046 - L2 LINE L2 -5 3267 3210 22 56 0 0 chr11 16887553 16887589 -133895964 + AT_rich Low_complexity Low_complexity 1 36 0 698 187 8 0 chr11 16887589 16887723 -133895830 - L1PA16 LINE L1 -4 6162 6028 2373 88 0 0 chr11 16887753 16888050 -133895503 + AluSc SINE Alu 3 299 -10 322 244 42 14 chr11 16890210 16890341 -133893212 + GA-rich Low_complexity Low_complexity 1 134 0 708 189 6 17 chr11 16890890 16891070 -133892483 + CT-rich Low_complexity Low_complexity 3 180 0 27 49 0 0 chr11 16891201 16891242 -133892311 + AT_rich Low_complexity Low_complexity 1 41 0 445 269 113 31 chr11 16891274 16891434 -133892119 + MIR SINE MIR 20 192 -70 318 169 0 0 chr11 16891443 16891508 -133892045 + CT-rich Low_complexity Low_complexity 2 66 0 212 143 0 0 chr11 16891531 16891566 -133891987 + (GA)n Simple_repeat Simple_repeat 2 36 0 1163 233 25 33 chr11 16892820 16893095 -133890458 + AluJo SINE Alu 10 282 -30 2516 55 0 0 chr11 16893342 16893653 -133889900 - AluY SINE Alu 0 311 1 21 0 0 0 chr11 16893661 16893682 -133889871 + AT_rich Low_complexity Low_complexity 1 21 0 1801 158 11 3 chr11 16895015 16895300 -133888253 + AluJb SINE Alu 3 289 -23 373 161 47 29 chr11 16895818 16896076 -133887477 + AluJo SINE Alu 1 314 0 21 36 0 0 chr11 16899161 16899189 -133884364 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr11 16899203 16899224 -133884329 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr11 16899335 16899361 -133884192 + AT_rich Low_complexity Low_complexity 1 26 0 25 83 0 0 chr11 16899447 16899507 -133884046 + AT_rich Low_complexity Low_complexity 1 60 0 23 0 0 0 chr11 16900224 16900247 -133883306 + AT_rich Low_complexity Low_complexity 1 23 0 237 300 285 15 chr11 16901558 16901758 -133881795 - MIR SINE MIR -6 256 3 249 108 0 0 chr11 16902071 16902108 -133881445 + (ATG)n Simple_repeat Simple_repeat 2 38 0 220 343 250 0 chr11 16902314 16902422 -133881131 - L2 LINE L2 -1 3271 3137 250 87 22 0 chr11 16902468 16902514 -133881039 + L1MA3 LINE L1 6259 6305 0 235 185 54 109 chr11 16902664 16902756 -133880797 - MIR SINE MIR 0 262 176 3856 270 53 38 chr11 16902762 16904338 -133879215 + L1MEc LINE L1 201 1800 -4763 279 325 0 32 chr11 16906016 16906139 -133877414 + L2 LINE L2 3191 3309 -4 621 285 30 53 chr11 16907542 16907805 -133875748 - L2 LINE L2 0 3313 3057 232 235 103 15 chr11 16907788 16907856 -133875697 + MIR SINE MIR 159 232 -30 * 207 216 27 0 chr11 16907829 16907866 -133875687 + L2 LINE L2 3210 3247 -25 * 263 192 82 14 chr11 16908730 16908803 -133874750 + GA-rich Low_complexity Low_complexity 3 80 0 21 82 0 0 chr11 17010036 17010085 -133773468 + AT_rich Low_complexity Low_complexity 1 49 0 22 56 0 0 chr11 17011463 17011499 -133772054 + AT_rich Low_complexity Low_complexity 1 36 0 607 204 72 0 chr11 17012398 17012550 -133771003 + L1MEc LINE L1 2274 2436 -3948 1780 156 3 35 chr11 17012658 17012972 -133770581 + AluJo SINE Alu 1 304 -8 477 0 0 0 chr11 17012972 17013025 -133770528 + (TA)n Simple_repeat Simple_repeat 2 54 0 2142 89 0 4 chr11 17013889 17014193 -133769360 - AluSg SINE Alu 0 303 1 762 215 45 25 chr11 17014380 17014580 -133768973 + L1MB5 LINE L1 5963 6166 -8 208 247 68 68 chr11 17017455 17017528 -133766025 + L2 LINE L2 3237 3309 -4 351 312 145 51 chr11 17017847 17018081 -133765472 - MIR SINE MIR 0 262 7 209 360 54 27 chr11 17018090 17018201 -133765352 - L2 LINE L2 -16 3256 3143 198 372 54 16 chr11 17018508 17018637 -133764916 + L2 LINE L2 2640 2773 -541 180 304 231 23 chr11 17018938 17019284 -133764269 - L2 LINE L2 -924 2390 1973 2373 89 0 3 chr11 17019610 17019914 -133763639 - AluY SINE Alu -8 303 1 7714 95 11 2 chr11 17019919 17021821 -133761732 - L1PA7 LINE L1 0 6154 4235 27524 99 8 30 chr11 17021921 17023516 -133760037 - L1P LINE L1 -802 5344 3715 879 107 0 0 chr11 17023516 17023637 -133759916 - AluY SINE Alu -6 305 185 27524 99 8 30 chr11 17023637 17027375 -133756178 - L1P LINE L1 -2431 3715 12 293 191 0 0 chr11 17027383 17027430 -133756123 + MSTB LTR MaLR 380 426 0 2128 252 112 18 chr11 17027430 17028344 -133755209 + L1MEc LINE L1 3090 4089 -2293 5556 239 73 14 chr11 17028348 17029112 -133754441 + L1M4 LINE L1 2 719 -5823 183 42 0 0 chr11 17029112 17029136 -133754417 + (TTG)n Simple_repeat Simple_repeat 2 25 0 5556 239 73 14 chr11 17029136 17029955 -133753598 + L1M4 LINE L1 719 1679 -4863 3669 59 2 6 chr11 17030066 17030542 -133753011 + L1PA6 LINE L1 5681 6154 0 1998 167 78 0 chr11 17030584 17030955 -133752598 - MSTA LTR MaLR -28 400 1 8342 166 50 31 chr11 17030955 17032575 -133750978 - MSTA-int LTR MaLR 0 1651 1 275 143 0 0 chr11 17032575 17032617 -133750936 - MSTB LTR MaLR 0 426 385 1189 184 16 98 chr11 17032622 17032938 -133750615 + AluJb SINE Alu 12 301 -11 1555 153 88 20 chr11 17032938 17033233 -133750320 - MSTB LTR MaLR -34 392 78 991 99 0 35 chr11 17033237 17033379 -133750174 - AluSq/x SINE Alu -176 137 1 3573 266 74 40 chr11 17033386 17033503 -133750050 - L1MEc LINE L1 -4602 1613 1501 700 195 0 0 chr11 17033503 17033626 -133749927 - FLAM_C SINE Alu -10 123 1 3573 266 74 40 chr11 17033626 17033777 -133749776 - L1MEc LINE L1 -4714 1501 1357 1765 164 32 4 chr11 17033777 17034057 -133749496 - AluJb SINE Alu -22 290 3 3573 266 74 40 chr11 17034057 17035363 -133748190 - L1MEc LINE L1 -4858 1357 38 1812 149 53 0 chr11 17035724 17036006 -133747547 - AluSx SINE Alu -15 297 1 426 263 213 0 chr11 17036500 17036660 -133746893 + MIR SINE MIR 69 262 0 1773 186 3 3 chr11 17037310 17037622 -133745931 + AluJo SINE Alu 1 312 0 336 48 0 0 chr11 17037842 17037884 -133745669 + (TG)n Simple_repeat Simple_repeat 1 42 0 1550 114 122 4 chr11 17037900 17038145 -133745408 - AluSg SINE Alu -36 274 1 271 284 87 0 chr11 17038550 17038677 -133744876 - L1ME4a LINE L1 -195 5926 5789 286 270 0 0 chr11 17038704 17038778 -133744775 - MER116 DNA Mariner -6 74 1 456 272 80 31 chr11 17038778 17039002 -133744551 - L1ME4a LINE L1 -352 5769 5535 1721 187 17 0 chr11 17040041 17040341 -133743212 + AluJo SINE Alu 1 305 -7 2136 152 6 3 chr11 17040558 17040901 -133742652 - MER2 DNA MER2_type 0 344 1 1570 158 9 80 chr11 17041503 17041839 -133741714 + AluSx SINE Alu 1 312 0 425 326 7 54 chr11 17042047 17042194 -133741359 + MIR3 SINE MIR 48 187 -21 207 281 0 62 chr11 17042215 17042250 -133741303 - L2 LINE L2 -4 3268 3237 14899 119 34 16 chr11 17042250 17043147 -133740406 - Tigger1 DNA MER2_type -1 2417 1538 1985 103 88 0 chr11 17043147 17043419 -133740134 + AluSx SINE Alu 1 296 -16 14899 119 34 16 chr11 17043419 17044895 -133738658 - Tigger1 DNA MER2_type -880 1538 1 207 281 0 62 chr11 17044895 17044923 -133738630 - L2 LINE L2 -35 3237 3209 438 299 120 32 chr11 17044944 17045161 -133738392 - MIR SINE MIR -12 250 15 280 256 145 51 chr11 17045213 17045330 -133738223 + MER5A DNA MER1_type 35 162 -27 408 320 89 63 chr11 17045728 17046291 -133737262 - L2 LINE L2 0 3313 2741 1211 264 115 30 chr11 17046293 17046762 -133736791 + LTR33 LTR ERVL 1 509 -12 394 299 140 5 chr11 17047034 17047248 -133736305 + MIR SINE MIR 5 247 -15 1866 54 29 121 chr11 17047431 17047744 -133735809 + AluYb8 SINE Alu 16 299 -19 216 200 0 0 chr11 17048733 17048798 -133734755 + (TA)n Simple_repeat Simple_repeat 1 65 0 21 36 0 0 chr11 17049019 17049047 -133734506 + AT_rich Low_complexity Low_complexity 1 28 0 206 147 0 0 chr11 17049697 17049731 -133733822 + L2 LINE L2 3280 3313 0 247 259 214 18 chr11 17050278 17050390 -133733163 - MIR SINE MIR -12 250 117 * 258 311 0 0 chr11 17050388 17050449 -133733104 + L2 LINE L2 3211 3271 -1 2380 107 0 0 chr11 17050815 17051123 -133732430 + AluSx SINE Alu 1 308 -4 1766 195 0 7 chr11 17051184 17051481 -133732072 + AluJo SINE Alu 3 297 -15 841 232 21 14 chr11 17051482 17051762 -133731791 + L1M4c LINE L1 2017 2298 -4086 22 35 0 0 chr11 17052226 17052255 -133731298 + AT_rich Low_complexity Low_complexity 1 29 0 1986 179 81 0 chr11 17052853 17053027 -133730526 + MSTA LTR MaLR 1 160 -268 1928 159 0 0 chr11 17053027 17053322 -133730231 + AluSx SINE Alu 1 295 -17 1986 179 81 0 chr11 17053322 17053543 -133730010 + MSTA LTR MaLR 160 428 0 485 287 116 6 chr11 17054065 17054229 -133729324 - MIR SINE MIR -30 232 51 1838 306 64 40 chr11 17054234 17055035 -133728518 + L2 LINE L2 1912 2741 -573 1687 163 21 10 chr11 17055035 17055324 -133728229 + AluJb SINE Alu 1 292 -20 1838 306 64 40 chr11 17055324 17055491 -133728062 + L2 LINE L2 2741 2903 -411 5699 97 19 1 chr11 17055512 17055867 -133727686 - L1PB1 LINE L1 0 6151 5804 402 21 0 0 chr11 17055867 17055914 -133727639 + (CA)n Simple_repeat Simple_repeat 1 47 0 5699 97 19 1 chr11 17055914 17056369 -133727184 - L1PB1 LINE L1 -347 5804 5327 603 247 250 44 chr11 17056369 17056713 -133726840 + L2 LINE L2 2898 3312 -1 599 288 46 7 chr11 17056771 17056924 -133726629 - MIR3 SINE MIR -31 177 19 25 31 0 0 chr11 17057277 17057309 -133726244 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr11 17057895 17057918 -133725635 + AT_rich Low_complexity Low_complexity 1 23 0 2598 52 3 0 chr11 17058234 17058541 -133725012 - AluSc SINE Alu -1 308 1 1401 174 54 7 chr11 17058885 17059188 -133724365 + MER33 DNA MER1_type 1 302 -22 1856 162 0 13 chr11 17059743 17060045 -133723508 + AluSg SINE Alu 1 298 -12 720 188 0 15 chr11 17060056 17060189 -133723364 + FLAM_A SINE Alu 3 133 0 1728 216 173 17 chr11 17060316 17060858 -133722695 + L1ME3A LINE L1 5542 6168 -2 232 293 309 0 chr11 17061000 17061123 -133722430 - MIR3 SINE MIR -3 205 45 22 0 0 0 chr11 17062039 17062061 -133721492 + AT_rich Low_complexity Low_complexity 1 22 0 280 264 43 49 chr11 17062380 17062543 -133721010 + L1ME4a LINE L1 5942 6103 -18 788 142 0 57 chr11 17062641 17062782 -133720771 + AluJo SINE Alu 1 133 -169 331 170 44 111 chr11 17062857 17062992 -133720561 - LTR37A LTR ERV1 -2 424 299 1502 172 71 4 chr11 17063433 17063726 -133719827 + AluJo SINE Alu 1 311 0 936 45 0 0 chr11 17063791 17063902 -133719651 + L1P LINE L1 3770 3880 -2266 5237 19 0 0 chr11 17063902 17064498 -133719055 + L1PA3 LINE L1 5560 6155 0 2137 138 25 6 chr11 17064738 17065065 -133718488 + MER41-int LTR ERV1 1 333 -5613 3662 187 118 76 chr11 17065268 17066656 -133716897 - Looper DNA T2_type -64 1494 49 860 202 51 6 chr11 17066797 17066975 -133716578 + MER5A DNA MER1_type 1 186 -3 490 81 0 54 chr11 17067720 17067794 -133715759 + U3 snRNA snRNA 1 70 -147 2358 150 48 0 chr11 17067876 17068289 -133715264 - Tigger2a DNA MER2_type 0 434 2 353 344 122 43 chr11 17068525 17068804 -133714749 - L2 LINE L2 0 3272 2972 448 187 187 66 chr11 17068947 17069129 -133714424 + MER6B DNA MER2_type 4 207 -3 1467 105 76 0 chr11 17069319 17069529 -133714024 - AluSg1 SINE Alu -83 226 1 471 290 85 66 chr11 17070396 17070655 -133712898 + L2 LINE L2 3047 3310 -3 24 0 0 0 chr11 17070849 17070873 -133712680 + AT_rich Low_complexity Low_complexity 1 24 0 955 162 0 42 chr11 17070875 17071042 -133712511 + AluJo SINE Alu 137 296 -6 1697 153 24 30 chr11 17071056 17071351 -133712202 + AluSx SINE Alu 2 294 -18 13457 87 50 10 chr11 17072061 17073812 -133709741 + Charlie3 DNA MER1_type 1 1918 -788 1982 138 7 7 chr11 17073812 17074110 -133709443 + AluSx SINE Alu 1 298 -14 13457 87 50 10 chr11 17074110 17074933 -133708620 + Charlie3 DNA MER1_type 1918 2706 0 1702 124 95 4 chr11 17075689 17075963 -133707590 - AluSx SINE Alu -13 299 1 1882 129 20 7 chr11 17075963 17076257 -133707296 - AluSx SINE Alu -14 298 1 1363 139 180 4 chr11 17076343 17076588 -133706965 - AluJo SINE Alu -14 288 1 1176 160 0 11 chr11 17076925 17077106 -133706447 - AluJo SINE Alu -14 298 120 237 211 0 0 chr11 17077107 17077164 -133706389 + T-rich Low_complexity Low_complexity 1 57 0 765 156 0 57 chr11 17077164 17077305 -133706248 - FLAM_A SINE Alu 0 133 1 195 42 0 0 chr11 17077501 17077525 -133706028 + (ATG)n Simple_repeat Simple_repeat 2 25 0 13754 187 15 9 chr11 17078277 17083264 -133700289 + L1PB1 LINE L1 1789 6866 -1 227 97 0 0 chr11 17083311 17083342 -133700211 - U2 snRNA snRNA -153 35 5 223 195 0 69 chr11 17083362 17083449 -133700104 + (TATAA)n Simple_repeat Simple_repeat 1 81 0 1298 202 4 43 chr11 17083650 17083927 -133699626 - AluJb SINE Alu -18 294 29 693 214 0 0 chr11 17083956 17084073 -133699480 - AluJo SINE Alu -185 117 1 25 31 0 0 chr11 17084135 17084167 -133699386 + AT_rich Low_complexity Low_complexity 1 32 0 234 316 0 0 chr11 17084181 17084257 -133699296 - HAL1 LINE L1 -941 1566 1491 293 282 12 37 chr11 17085072 17085235 -133698318 - L1MEd LINE L1 -4905 1214 1056 1039 113 80 13 chr11 17085318 17085469 -133698084 + FRAM SINE Alu 1 161 -15 2197 108 3 0 chr11 17085571 17085859 -133697694 - AluSc SINE Alu -20 289 1 5252 137 42 41 chr11 17086280 17087348 -133696205 - L1MC2 LINE L1 -8 6336 5268 285 308 0 0 chr11 17087353 17087460 -133696093 - L1MB8 LINE L1 -281 5897 5791 760 259 40 39 chr11 17087546 17087911 -133695642 - L1MB8 LINE L1 -577 5589 5221 2516 51 0 0 chr11 17087911 17088205 -133695348 + AluY SINE Alu 1 294 -17 760 259 40 39 chr11 17088205 17088244 -133695309 - L1MB8 LINE L1 -945 5221 5184 2519 222 41 11 chr11 17088405 17089116 -133694437 - L1M4 LINE L1 -867 5348 4617 4371 262 71 12 chr11 17089119 17090076 -133693477 - L1MEc LINE L1 -2499 3716 2817 1856 163 36 11 chr11 17090076 17090432 -133693121 + MLT1A1 LTR MaLR 1 365 0 4371 262 71 12 chr11 17090432 17091030 -133692523 - L1MEc LINE L1 -3398 2817 2256 1508 210 0 7 chr11 17091030 17091306 -133692247 - AluJo SINE Alu -10 302 29 4371 262 71 12 chr11 17091306 17091952 -133691601 - L1MEc LINE L1 -3959 2256 1414 954 215 66 134 chr11 17091947 17092184 -133691369 + L1M4 LINE L1 3705 3957 -2189 * 1348 192 42 31 chr11 17092184 17092471 -133691082 - AluJo SINE Alu -18 294 5 954 215 66 134 chr11 17092471 17092808 -133690745 + L1M4 LINE L1 3957 4223 -1923 1723 181 27 0 chr11 17092808 17093100 -133690453 - AluJo SINE Alu -12 300 1 954 215 66 134 chr11 17093100 17093239 -133690314 + L1M4 LINE L1 4223 4370 -1776 21805 136 22 24 chr11 17093443 17093478 -133690075 + L1MB7 LINE L1 18 52 -7513 579 191 124 0 chr11 17093478 17093626 -133689927 + FLAM_C SINE Alu 1 161 0 21805 136 22 24 chr11 17093626 17096008 -133687545 + L1MB7 LINE L1 52 2437 -5128 1825 157 35 0 chr11 17096008 17096295 -133687258 + AluSx SINE Alu 1 297 -15 21805 136 22 24 chr11 17096295 17096441 -133687112 + L1MB7 LINE L1 2437 2582 -4983 1364 176 66 70 chr11 17096441 17096742 -133686811 + AluJb SINE Alu 3 302 -10 21805 136 22 24 chr11 17096742 17097461 -133686092 + L1MB7 LINE L1 2582 3301 -4264 180 111 0 0 chr11 17097461 17097488 -133686065 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 21805 136 22 24 chr11 17097488 17097582 -133685971 + L1MB7 LINE L1 3301 3394 -4171 1873 128 14 4 chr11 17097582 17097863 -133685690 + AluSx SINE Alu 7 290 -22 21805 136 22 24 chr11 17097863 17098818 -133684735 + L1MB7 LINE L1 3394 4348 -3217 421 164 0 0 chr11 17098818 17098891 -133684662 + L1PA12 LINE L1 159 231 -7350 8857 219 121 46 chr11 17098893 17101860 -133681693 + L1PA12 LINE L1 694 3436 -4148 2071 149 28 22 chr11 17101860 17102222 -133681331 - THE1B LTR MaLR 0 364 1 8857 219 121 46 chr11 17102222 17102477 -133681076 + L1PA12 LINE L1 3436 3670 -3914 615 148 0 0 chr11 17102477 17102578 -133680975 + AluSg/x SINE Alu 202 302 -8 8857 219 121 46 chr11 17102578 17103392 -133680161 + L1PA12 LINE L1 3670 4421 -3163 2572 56 0 3 chr11 17103392 17103694 -133679859 + AluY SINE Alu 1 301 -10 8857 219 121 46 chr11 17103694 17104070 -133679483 + L1PA12 LINE L1 4421 5614 -1970 509 147 0 0 chr11 17104070 17104145 -133679408 + AluS SINE Alu 1 75 -238 1995 139 0 20 chr11 17104153 17104455 -133679098 + AluSx SINE Alu 1 296 -16 305 159 148 0 chr11 17104457 17104545 -133679008 + L1MB7 LINE L1 5588 5688 -1877 590 198 19 116 chr11 17104646 17104904 -133678649 + MER41-int LTR ERV1 406 638 -5308 960 164 106 14 chr11 17104928 17105135 -133678418 + MSTA LTR MaLR 203 428 0 6112 100 3 21 chr11 17105146 17105670 -133677883 + L1PA14 LINE L1 4797 5329 -832 2088 138 7 0 chr11 17105670 17105960 -133677593 + AluSx SINE Alu 1 292 -20 6112 100 3 21 chr11 17105960 17106796 -133676757 + L1PA14 LINE L1 5329 6161 0 1769 120 101 0 chr11 17106827 17107103 -133676450 + AluSx SINE Alu 1 304 -8 317 154 393 26 chr11 17107552 17107669 -133675884 + MIR SINE MIR 2 161 -101 890 210 28 17 chr11 17107804 17107980 -133675573 + MER5A DNA MER1_type 12 189 0 3260 129 18 27 chr11 17108122 17108542 -133675011 + L1MB7 LINE L1 6866 7281 -322 1633 159 94 4 chr11 17108542 17108818 -133674735 + AluJb SINE Alu 1 301 -11 3260 129 18 27 chr11 17108818 17108995 -133674558 + L1MB7 LINE L1 7281 7458 -145 693 133 12 91 chr11 17109375 17109427 -133674126 + L1MB8 LINE L1 6022 6077 -101 2079 121 7 26 chr11 17109427 17109732 -133673821 + AluSx SINE Alu 1 299 -13 693 133 12 91 chr11 17109732 17109844 -133673709 + L1MB8 LINE L1 6077 6173 -5 309 230 9 35 chr11 17110134 17110247 -133673306 + L1ME4a LINE L1 5967 6076 -45 500 256 19 0 chr11 17110566 17110722 -133672831 - L1MC4a LINE L1 -1900 5908 5750 1769 167 3 29 chr11 17110730 17111036 -133672517 - AluSx SINE Alu -12 300 3 21437 108 15 12 chr11 17111282 17113330 -133670223 + L1P3 LINE L1 700 2780 -3681 182 61 0 30 chr11 17113330 17113363 -133670190 + (TA)n Simple_repeat Simple_repeat 2 33 0 21437 108 15 12 chr11 17113363 17115104 -133668449 + L1P3 LINE L1 2780 4515 -1946 180 0 0 0 chr11 17115216 17115236 -133668317 + (A)n Simple_repeat Simple_repeat 1 20 0 446 231 108 64 chr11 17116852 17117055 -133666498 + MIR SINE MIR 45 256 -6 1584 156 32 32 chr11 17117085 17117367 -133666186 - AluJb SINE Alu -30 282 1 213 295 89 58 chr11 17117557 17117747 -133665806 + L2 LINE L2 1789 1984 -1330 580 224 164 5 chr11 17117788 17117989 -133665564 + Charlie2 DNA MER1_type 91 323 -2539 612 166 166 36 chr11 17118009 17118232 -133665321 + Charlie2 DNA MER1_type 1893 2144 -718 2114 129 0 0 chr11 17118445 17118740 -133664813 - AluSq SINE Alu -18 295 1 625 153 65 40 chr11 17118949 17119073 -133664480 - L2 LINE L2 -14 3299 3173 392 143 84 0 chr11 17119077 17119231 -133664322 + (TA)n Simple_repeat Simple_repeat 2 168 0 908 103 0 8 chr11 17119243 17119360 -133664193 - AluSc SINE Alu -187 122 7 197 81 0 27 chr11 17119364 17119401 -133664152 + (TA)n Simple_repeat Simple_repeat 2 37 0 792 252 143 42 chr11 17119447 17119824 -133663729 - L2 LINE L2 -445 2869 2455 1029 165 0 13 chr11 17119824 17119982 -133663571 + FRAM SINE Alu 1 153 -23 1977 99 33 7 chr11 17119990 17120315 -133663238 + AluSc SINE Alu 1 332 0 1975 116 4 14 chr11 17121082 17121357 -133662196 + AluSp SINE Alu 1 272 -41 997 147 51 0 chr11 17121747 17121924 -133661629 + MER20 DNA MER1_type 33 218 -1 * 1595 224 102 12 chr11 17121924 17122323 -133661230 + Zaphod DNA AcHobo 9 443 -3588 689 197 34 0 chr11 17122408 17122525 -133661028 - FLAM_A SINE Alu -12 121 1 232 300 27 0 chr11 17122542 17122652 -133660901 + L1ME3A LINE L1 1570 1682 -4858 1736 156 10 14 chr11 17122661 17122950 -133660603 + AluJo SINE Alu 11 298 -14 1733 159 13 19 chr11 17123099 17123413 -133660140 - AluJb SINE Alu 0 312 1 264 229 0 57 chr11 17123506 17123611 -133659942 + L1M2 LINE L1 2429 2527 -4322 423 365 37 19 chr11 17123628 17123899 -133659654 + L1MEc LINE L1 156 431 -5965 948 181 0 6 chr11 17124264 17124430 -133659123 + FRAM SINE Alu 1 165 -1 1525 264 61 38 chr11 17124443 17125026 -133658527 + L1ME3A LINE L1 4875 5480 -1060 2221 123 7 0 chr11 17125026 17125327 -133658226 - AluSq SINE Alu -10 303 1 1525 264 61 38 chr11 17125327 17125478 -133658075 + L1ME3A LINE L1 5480 5626 -914 421 328 94 39 chr11 17125657 17125965 -133657588 + LTR16C LTR ERVL 156 480 -11 300 291 118 20 chr11 17125978 17126181 -133657372 + L1P5 LINE L1 5265 5487 -669 1340 236 92 69 chr11 17126196 17126718 -133656835 - MLT1F LTR MaLR -8 534 1 686 260 29 94 chr11 17126720 17127202 -133656351 + L1ME3A LINE L1 5907 6356 -208 243 301 44 9 chr11 17127350 17127463 -133656090 + L1ME3A LINE L1 6440 6556 -8 2428 92 0 7 chr11 17127471 17127777 -133655776 + AluSx SINE Alu 1 304 -8 394 264 136 7 chr11 17128827 17128967 -133654586 - MIR SINE MIR -10 252 95 375 196 9 89 chr11 17128968 17129080 -133654473 + MIR SINE MIR 160 262 0 578 271 32 7 chr11 17129292 17129447 -133654106 - L2 LINE L2 0 3313 3155 804 218 68 44 chr11 17129499 17129747 -133653806 - MIR SINE MIR -3 259 6 298 294 210 8 chr11 17130508 17130627 -133652926 + MIR SINE MIR 12 154 -108 318 293 45 45 chr11 17130659 17130816 -133652737 - MLT1J2 LTR MaLR -28 422 266 * 342 307 24 48 chr11 17130808 17130974 -133652579 - MLT1I LTR MaLR -169 240 79 278 26 26 0 chr11 17134719 17134758 -133648795 + (TAAA)n Simple_repeat Simple_repeat 1 40 0 2385 88 3 3 chr11 17136297 17136593 -133646960 + AluSp SINE Alu 1 296 -17 563 309 100 5 chr11 17138160 17138380 -133645173 + MIR SINE MIR 12 252 -10 348 230 23 0 chr11 17138735 17138822 -133644731 + MIR SINE MIR 53 141 -67 252 177 0 0 chr11 17140368 17140430 -133643123 - MER4-int LTR ERV1 -5425 1173 1112 318 143 0 0 chr11 17140430 17140493 -133643060 + (CA)n Simple_repeat Simple_repeat 1 63 0 352 297 54 0 chr11 17142234 17142345 -133641208 - MIR SINE MIR -133 129 13 201 338 0 13 chr11 17142406 17142483 -133641070 + L2 LINE L2 2763 2838 -476 181 363 12 12 chr11 17142629 17142709 -133640844 + L2 LINE L2 3193 3272 0 411 192 0 50 chr11 17143096 17143195 -133640358 + L3b LINE CR1 1291 1384 -199 401 274 9 0 chr11 17143732 17143838 -133639715 - L2 LINE L2 -8 3264 3158 284 206 0 59 chr11 17144277 17144345 -133639208 - MIR SINE MIR -118 144 81 687 211 108 10 chr11 17148686 17148880 -133634673 + MIR SINE MIR 29 241 -21 470 262 21 114 chr11 17150690 17151076 -133632477 + L1ME3A LINE L1 5811 6160 -10 1083 147 0 0 chr11 17151086 17151243 -133632310 - FRAM SINE Alu -16 160 4 222 318 91 30 chr11 17151415 17151547 -133632006 - MIR3 SINE MIR -68 140 1 196 347 25 50 chr11 17152211 17152332 -133631221 + MIR SINE MIR 71 188 -74 457 234 0 0 chr11 17152530 17152624 -133630929 + MIR3 SINE MIR 101 194 -14 1172 180 19 45 chr11 17153586 17153818 -133629735 + L1MB2 LINE L1 5902 6128 -43 2046 141 10 0 chr11 17153818 17154117 -133629436 + AluSx SINE Alu 1 302 -10 1172 180 19 45 chr11 17154117 17154151 -133629402 + L1MB2 LINE L1 6128 6161 -10 2384 102 3 13 chr11 17154152 17154467 -133629086 - AluSq SINE Alu -1 312 1 1775 148 25 41 chr11 17154620 17154962 -133628591 + L1MB7 LINE L1 5793 6130 -54 1663 176 13 38 chr11 17154962 17155275 -133628278 - AluJo SINE Alu -7 305 1 1775 148 25 41 chr11 17155275 17155325 -133628228 + L1MB7 LINE L1 6130 6179 -5 27 29 0 0 chr11 17155345 17155379 -133628174 + AT_rich Low_complexity Low_complexity 1 34 0 221 269 0 0 chr11 17155737 17155789 -133627764 + L2 LINE L2 3220 3271 -1 862 319 57 19 chr11 17156836 17157306 -133626247 + L1MC4a LINE L1 5355 5842 -1966 703 189 31 6 chr11 17157306 17157465 -133626088 + MER3 DNA MER1_type 3 165 -44 209 274 20 0 chr11 17158402 17158453 -133625100 + L2 LINE L2 3213 3264 -8 358 288 39 33 chr11 17160254 17160407 -133623146 + MIR SINE MIR 43 196 -66 2342 112 0 0 chr11 17160855 17161151 -133622402 - AluSg SINE Alu -12 298 3 2438 104 0 0 chr11 17163818 17164126 -133619427 + AluSg SINE Alu 2 309 -1 299 326 29 40 chr11 17164283 17164458 -133619095 + L2 LINE L2 3100 3272 0 1056 156 0 6 chr11 17166075 17166254 -133617299 - MER5B DNA MER1_type 0 178 1 820 214 44 11 chr11 17166262 17166444 -133617109 - MER5A DNA MER1_type 0 189 2 414 282 46 75 chr11 17166456 17166630 -133616923 + MER5B DNA MER1_type 4 172 -6 364 279 125 7 chr11 17166644 17166780 -133616773 - MER5A DNA MER1_type 0 189 38 384 303 45 17 chr11 17167231 17167409 -133616144 + MIR SINE MIR 77 259 -3 398 285 199 0 chr11 17167986 17168137 -133615416 - L3 LINE CR1 -103 1474 1294 258 307 23 0 chr11 17168450 17168538 -133615015 + MLT1K LTR MaLR 499 588 0 362 309 117 9 chr11 17168599 17168829 -133614724 - L3 LINE CR1 -473 1104 850 329 294 124 20 chr11 17169170 17169323 -133614230 + MIR SINE MIR 67 235 -27 196 281 45 11 chr11 17172913 17173002 -133610551 + MIR SINE MIR 48 139 -69 1868 166 38 0 chr11 17173836 17174126 -133609427 - AluSx SINE Alu -11 301 1 421 195 38 0 chr11 17174315 17174407 -133609146 + MIR SINE MIR 70 167 -41 197 216 0 0 chr11 17174655 17174692 -133608861 + MIR SINE MIR 109 145 -63 671 216 70 38 chr11 17174829 17175014 -133608539 + MIR SINE MIR 72 262 0 236 221 169 0 chr11 17176334 17176411 -133607142 - MER96 DNA MER1_type? -32 143 54 587 260 35 1 chr11 17176457 17176625 -133606928 + MIR SINE MIR 16 192 -30 2248 103 0 0 chr11 17177107 17177418 -133606135 - AluY SINE Alu 0 311 1 2067 98 0 0 chr11 17177436 17177713 -133605840 - AluSx SINE Alu -35 277 1 203 289 19 19 chr11 17177803 17177855 -133605698 + MIR SINE MIR 20 71 -191 229 245 0 0 chr11 17177870 17177919 -133605634 - MIR SINE MIR -5 257 209 886 145 10 105 chr11 17177927 17177992 -133605561 + MER5A DNA MER1_type 9 79 -110 2169 121 57 25 chr11 17177992 17178396 -133605157 + L1MA7 LINE L1 5875 6291 0 886 145 10 105 chr11 17178396 17178530 -133605023 + MER5A DNA MER1_type 79 189 0 419 228 59 44 chr11 17178562 17178698 -133604855 + MIR SINE MIR 71 208 -54 225 94 0 0 chr11 17180819 17180851 -133602702 + (A)n Simple_repeat Simple_repeat 1 32 0 632 197 11 112 chr11 17181063 17181241 -133602312 + MER5B DNA MER1_type 5 164 -14 197 277 43 0 chr11 17181244 17181291 -133602262 - MER5B DNA MER1_type 0 178 130 1590 168 10 47 chr11 17181299 17181622 -133601931 - AluJo SINE Alu 0 312 1 417 225 0 22 chr11 17181623 17181712 -133601841 + MER5B DNA MER1_type 35 121 -57 223 287 178 0 chr11 17181748 17181877 -133601676 + L2 LINE L2 2168 2319 -995 373 189 176 40 chr11 17181969 17182117 -133601436 + L2 LINE L2 2285 2452 -862 3275 81 9 0 chr11 17182124 17182570 -133600983 + L1MA3 LINE L1 5696 6145 -160 598 174 68 61 chr11 17182570 17182702 -133600851 + AluJo SINE Alu 2 134 -178 901 115 29 9 chr11 17182702 17182851 -133600702 + L1MA3 LINE L1 6123 6279 -33 448 298 279 13 chr11 17182851 17183163 -133600390 + L2 LINE L2 2447 2841 -473 481 297 86 22 chr11 17184152 17184374 -133599179 + MIR SINE MIR 15 250 -12 585 320 71 62 chr11 17184927 17185333 -133598220 + L2 LINE L2 2863 3272 0 560 302 73 6 chr11 17185613 17185792 -133597761 - MIR SINE MIR -70 192 2 2723 110 3 0 chr11 17186452 17186826 -133596727 + THE1C LTR MaLR 1 375 0 638 244 114 51 chr11 17186977 17187326 -133596227 + MLT1K LTR MaLR 30 520 -68 1384 148 33 63 chr11 17187326 17187629 -133595924 - AluJo SINE Alu -16 296 3 638 244 114 51 chr11 17187629 17187701 -133595852 + MLT1K LTR MaLR 520 586 -2 1732 121 4 0 chr11 17187855 17188103 -133595450 + AluSx SINE Alu 46 294 -18 1557 194 0 16 chr11 17188291 17188600 -133594953 - AluJo SINE Alu -8 304 1 181 323 52 21 chr11 17189001 17189097 -133594456 - L2 LINE L2 -7 3306 3208 836 222 99 24 chr11 17189959 17190171 -133593382 + MIR SINE MIR 24 251 -11 795 297 88 22 chr11 17190190 17190634 -133592919 + MLT1J LTR MaLR 39 511 0 234 308 65 0 chr11 17192093 17192200 -133591353 - MIR SINE MIR -6 256 143 606 90 0 0 chr11 17192219 17192297 -133591256 + AluS SINE Alu 2 79 -234 2062 124 16 0 chr11 17192315 17192622 -133590931 - AluSx SINE Alu 0 312 1 1894 147 0 3 chr11 17193305 17193598 -133589955 + AluJb SINE Alu 1 292 -20 521 246 171 37 chr11 17193899 17194086 -133589467 - MIR SINE MIR -20 242 31 770 286 89 70 chr11 17194235 17194753 -133588800 + MLT1K LTR MaLR 61 588 0 2070 127 0 13 chr11 17195086 17195441 -133588112 - AluSx SINE Alu 0 312 1 439 288 14 7 chr11 17195666 17195805 -133587748 - MER117 DNA MER1_type -56 141 2 452 273 98 44 chr11 17196462 17196543 -133587010 + L1MC/D LINE L1 5297 5372 -2436 1475 189 0 23 chr11 17196543 17196849 -133586704 + AluJo SINE Alu 1 299 -13 452 273 98 44 chr11 17196849 17197006 -133586547 + L1MC/D LINE L1 5372 5558 -2250 2276 64 34 0 chr11 17197006 17197303 -133586250 - AluY SINE Alu -4 307 1 452 273 98 44 chr11 17197303 17197378 -133586175 + L1MC/D LINE L1 5558 5628 -2180 228 310 50 10 chr11 17197444 17197544 -133586009 + L1MC/D LINE L1 5768 5871 -1937 324 230 24 16 chr11 17197726 17197820 -133585733 + (TA)n Simple_repeat Simple_repeat 1 98 -29 1855 124 70 36 chr11 17197820 17198151 -133585402 - MER2 DNA MER2_type -1 343 2 324 230 24 16 chr11 17198151 17198182 -133585371 + (TA)n Simple_repeat Simple_repeat 98 127 0 285 290 270 28 chr11 17198254 17198506 -133585047 + L3 LINE CR1 344 656 -921 245 250 58 0 chr11 17198528 17198580 -133584973 - L2 LINE L2 0 3272 3218 2141 85 7 4 chr11 17198597 17198899 -133584654 + AluSq SINE Alu 1 303 0 1095 81 0 179 chr11 17200572 17200807 -133582746 + 7SK RNA RNA 1 193 0 180 0 0 0 chr11 17200913 17200933 -133582620 + (A)n Simple_repeat Simple_repeat 1 20 0 476 241 102 24 chr11 17201102 17201268 -133582285 - MIR SINE MIR -10 252 74 892 142 51 71 chr11 17201272 17201469 -133582084 + L2 LINE L2 3120 3312 -1 206 208 75 19 chr11 17201457 17201510 -133582043 - MIR SINE MIR -135 73 18 * 1840 146 11 0 chr11 17201976 17202282 -133581271 + AluSx SINE Alu 1 309 0 216 178 0 22 chr11 17203196 17203241 -133580312 - MIR SINE MIR 0 262 219 745 296 85 53 chr11 17203452 17203660 -133579893 - L2 LINE L2 -359 2955 2755 1776 154 4 0 chr11 17203660 17203985 -133579568 - AluJb SINE Alu 0 326 1 745 296 85 53 chr11 17203985 17204319 -133579234 - L2 LINE L2 -559 2755 2395 1977 140 0 0 chr11 17204321 17204629 -133578924 + AluSx SINE Alu 1 308 -4 192 77 0 0 chr11 17204637 17204663 -133578890 + (GAGAA)n Simple_repeat Simple_repeat 5 30 0 789 241 65 49 chr11 17204703 17204948 -133578605 + MIR SINE MIR 8 256 -6 474 286 100 79 chr11 17205244 17205403 -133578150 - L2 LINE L2 -159 3113 2944 2340 65 13 0 chr11 17205403 17205710 -133577843 - AluY SINE Alu 0 311 1 474 286 100 79 chr11 17205710 17205840 -133577713 - L2 LINE L2 -328 2944 2818 2121 105 0 38 chr11 17205870 17206184 -133577369 + AluSq SINE Alu 5 306 -7 222 292 0 0 chr11 17206317 17206365 -133577188 - MIR SINE MIR -3 259 212 222 398 39 19 chr11 17206546 17206649 -133576904 + L2 LINE L2 3153 3257 -15 1530 217 104 3 chr11 17206708 17207091 -133576462 - Charlie4a DNA MER1_type 0 508 87 279 213 70 98 chr11 17207956 17208109 -133575444 + MIR SINE MIR 42 184 -62 2197 110 3 0 chr11 17209758 17210067 -133573486 - AluSq SINE Alu -3 310 1 22 0 0 0 chr11 17210899 17210921 -133572632 + AT_rich Low_complexity Low_complexity 1 22 0 643 202 0 0 chr11 17211396 17211510 -133572043 + FLAM_C SINE Alu 15 128 -15 219 349 0 0 chr11 17211761 17211827 -133571726 + L2 LINE L2 2994 3059 -213 293 279 131 16 chr11 17212343 17212465 -133571088 + L2 LINE L2 3137 3272 0 312 322 56 56 chr11 17212596 17212810 -133570743 - L2 LINE L2 -788 2526 2313 297 282 47 57 chr11 17213894 17214049 -133569504 + MIR SINE MIR 40 190 -60 2062 106 0 0 chr11 17216017 17216337 -133567216 - AluSx SINE Alu 0 320 1 334 244 76 17 chr11 17216386 17216505 -133567048 - L1ME4a LINE L1 -29 6092 5967 2308 80 3 0 chr11 17216811 17217110 -133566443 - AluSq SINE Alu -13 300 1 476 337 57 29 chr11 17217579 17217929 -133565624 - MARNA DNA Mariner -179 407 48 319 330 26 0 chr11 17217827 17217942 -133565611 + MARNA DNA Mariner 437 554 -32 * 360 292 183 0 chr11 17218851 17218988 -133564565 - MIR SINE MIR -13 249 88 239 328 103 41 chr11 17219113 17219308 -133564245 + MIR SINE MIR 12 218 -44 613 213 47 8 chr11 17219562 17219689 -133563864 + AluSq/x SINE Alu 2 133 -179 1404 172 60 0 chr11 17219700 17219967 -133563586 + AluSx SINE Alu 1 283 -29 329 303 131 7 chr11 17222169 17222314 -133561239 + L3b LINE CR1 1113 1275 -308 1083 194 108 0 chr11 17222434 17222666 -133560887 + MIR SINE MIR 2 258 -4 23 0 0 0 chr11 17222692 17222715 -133560838 + AT_rich Low_complexity Low_complexity 1 23 0 2765 96 6 3 chr11 17222806 17223169 -133560384 + THE1B LTR MaLR 1 364 0 721 263 84 105 chr11 17223175 17223605 -133559948 - L3 LINE CR1 -188 1389 969 1483 154 103 4 chr11 17223761 17224033 -133559520 + AluSx SINE Alu 1 299 -13 534 250 210 55 chr11 17224124 17224157 -133559396 + MLT1I LTR MaLR 4 31 -378 1943 117 28 3 chr11 17224157 17224448 -133559105 - AluSg SINE Alu -12 298 1 534 250 210 55 chr11 17224448 17224629 -133558924 + MLT1I LTR MaLR 31 183 -226 2353 81 0 0 chr11 17224629 17224925 -133558628 + AluSq SINE Alu 1 296 -17 534 250 210 55 chr11 17224925 17225057 -133558496 + MLT1I LTR MaLR 183 405 -4 1097 156 56 0 chr11 17225492 17225671 -133557882 - MER5A DNA MER1_type 0 189 1 267 299 98 24 chr11 17226163 17226327 -133557226 + L2 LINE L2 2395 2570 -744 227 162 0 0 chr11 17226547 17226584 -133556969 + MLT1I LTR MaLR 370 406 -3 363 357 8 0 chr11 17226803 17226929 -133556624 + L2 LINE L2 3184 3310 -3 463 273 169 6 chr11 17227675 17227847 -133555706 + MIR SINE MIR 23 222 -40 599 182 73 21 chr11 17227927 17228119 -133555434 + L1MC5 LINE L1 7729 7930 -31 510 202 9 26 chr11 17228644 17228666 -133554887 - FLAM_A SINE Alu -188 123 102 1936 127 0 41 chr11 17228666 17228981 -133554572 + AluJb SINE Alu 1 302 -10 510 202 9 26 chr11 17228981 17229072 -133554481 - FLAM_A SINE Alu -209 102 12 1958 114 28 0 chr11 17230292 17230582 -133552971 - AluSx SINE Alu -10 302 5 1408 165 19 4 chr11 17230852 17231112 -133552441 - AluJo SINE Alu -23 289 26 389 248 114 9 chr11 17231148 17231253 -133552300 - L2 LINE L2 -7 3306 3191 277 302 31 39 chr11 17231319 17231448 -133552105 - L1ME LINE L1 -426 5695 5568 2182 110 0 0 chr11 17231988 17232287 -133551266 - AluSx SINE Alu -13 299 1 1850 161 3 0 chr11 17232548 17232846 -133550707 + AluJb SINE Alu 4 302 -10 301 211 0 74 chr11 17233547 17233642 -133549911 - MIR SINE MIR -57 205 118 1784 160 13 3 chr11 17233759 17234065 -133549488 - AluJb SINE Alu -3 309 1 510 281 31 12 chr11 17236114 17236274 -133547279 + MIR SINE MIR 94 256 -6 1419 291 86 27 chr11 17236301 17236926 -133546627 + L2 LINE L2 2316 2977 -337 965 153 0 6 chr11 17236932 17237089 -133546464 - AluSg/x SINE Alu -27 285 130 433 185 22 33 chr11 17238440 17238532 -133545021 + MIR SINE MIR 58 148 -60 389 259 118 22 chr11 17238592 17238727 -133544826 + MIR SINE MIR 36 183 -79 355 250 0 43 chr11 17239150 17239242 -133544311 + MIR3 SINE MIR 121 208 0 522 186 97 0 chr11 17240388 17240501 -133543052 + L2 LINE L2 3189 3312 -1 583 196 7 26 chr11 17240648 17240791 -133542762 + MER69 DNA AcHobo 9 2488 -38 237 108 0 0 chr11 17241173 17241210 -133542343 + (CA)n Simple_repeat Simple_repeat 2 38 0 549 311 51 6 chr11 17241253 17241430 -133542123 - MIR SINE MIR -55 207 23 341 265 97 107 chr11 17242235 17242431 -133541122 - L1MC4a LINE L1 -1786 6022 5829 2184 121 0 6 chr11 17242672 17242986 -133540567 + AluSx SINE Alu 1 312 0 1868 136 39 0 chr11 17243381 17243667 -133539886 + AluSx SINE Alu 2 298 -14 1226 128 5 25 chr11 17243699 17243895 -133539658 + AluSq SINE Alu 2 193 -120 2079 105 3 19 chr11 17244033 17244347 -133539206 + AluSx SINE Alu 1 309 -3 2321 87 0 0 chr11 17244751 17245051 -133538502 + AluSx SINE Alu 2 301 -11 227 122 73 0 chr11 17245132 17245173 -133538380 - L2 LINE L2 -1 3312 3269 649 177 103 6 chr11 17245369 17245544 -133538009 + L1M2 LINE L1 1812 2003 -4846 486 151 0 0 chr11 17245544 17245617 -133537936 + AluJo SINE Alu 59 131 -181 302 61 20 0 chr11 17245623 17245672 -133537881 + (TCTCCC)n Simple_repeat Simple_repeat 1 50 0 9680 57 3 86 chr11 17245677 17247186 -133536367 + SVA Other Other 2 1386 0 237 71 18 179 chr11 17247239 17247295 -133536258 + FRAM SINE Alu 1 12 -153 1334 194 46 93 chr11 17247297 17247729 -133535824 + LTR7 LTR ERV1 1 412 -38 252 0 0 0 chr11 17247739 17247767 -133535786 + (TA)n Simple_repeat Simple_repeat 2 29 0 818 222 0 12 chr11 17247776 17247943 -133535610 + FRAM SINE Alu 1 165 -1 3429 243 20 9 chr11 17247943 17248895 -133534658 + L1PA15-16 LINE L1 2149 3113 -3736 336 350 26 0 chr11 17248919 17249036 -133534517 - MIR3 SINE MIR -4 204 85 1509 162 35 17 chr11 17249213 17249391 -133534162 - AluJo SINE Alu -7 305 119 207 0 0 0 chr11 17249391 17249414 -133534139 + (CTATT)n Simple_repeat Simple_repeat 5 27 0 1509 162 35 17 chr11 17249414 17249525 -133534028 - AluJo SINE Alu -193 119 11 948 223 134 8 chr11 17249632 17249870 -133533683 + MLT1C LTR MaLR 200 467 0 994 325 88 35 chr11 17249885 17250518 -133533035 + L3 LINE CR1 910 1576 -1 234 0 0 0 chr11 17250727 17250753 -133532800 + (TG)n Simple_repeat Simple_repeat 1 26 0 1419 173 0 82 chr11 17250753 17251091 -133532462 - AluJb SINE Alu 0 313 1 1146 198 25 0 chr11 17251148 17251350 -133532203 - MLT1A1 LTR MaLR -52 313 107 324 231 167 9 chr11 17251431 17251539 -133532014 - MIR SINE MIR -56 206 82 342 272 0 22 chr11 17251689 17251781 -133531772 + MIR3 SINE MIR 104 193 -15 195 314 114 0 chr11 17252864 17252934 -133530619 + MIR SINE MIR 16 93 -115 811 237 45 0 chr11 17253212 17253389 -133530164 - MIR SINE MIR -47 215 31 438 330 20 15 chr11 17254407 17254604 -133528949 + L2 LINE L2 2221 2418 -896 186 312 159 60 chr11 17254756 17255070 -133528483 + L2 LINE L2 2443 2787 -527 253 296 153 35 chr11 17255413 17255584 -133527969 - MIR SINE MIR -70 192 4 514 301 109 5 chr11 17256736 17256929 -133526624 + MIR SINE MIR 35 247 -15 306 294 22 38 chr11 17257026 17257210 -133526343 + L2 LINE L2 2563 2743 -571 499 269 114 5 chr11 17257221 17257440 -133526113 + L1M4 LINE L1 4442 4684 -1462 2243 65 3 7 chr11 17257535 17257828 -133525725 + AluSp SINE Alu 1 292 -21 409 320 76 15 chr11 17257982 17258179 -133525374 - MIR SINE MIR -2 260 52 2216 86 10 7 chr11 17259164 17259467 -133524086 - AluSx SINE Alu -8 304 1 4061 172 35 28 chr11 17259849 17259907 -133523646 - L1MB7 LINE L1 -10 6174 6118 1659 169 7 7 chr11 17259907 17260208 -133523345 + AluJo SINE Alu 1 301 -11 4061 172 35 28 chr11 17260208 17260967 -133522586 - L1MB7 LINE L1 -66 6118 5351 662 272 108 19 chr11 17260995 17261208 -133522345 + MIR SINE MIR 31 262 0 188 284 0 45 chr11 17261548 17261615 -133521938 + L2 LINE L2 3187 3250 -22 278 246 167 37 chr11 17262654 17262869 -133520684 + L1ME4a LINE L1 5692 5934 -187 1704 167 3 11 chr11 17263291 17263578 -133519975 + AluJb SINE Alu 1 285 -27 33 0 0 0 chr11 17263578 17263611 -133519942 + AT_rich Low_complexity Low_complexity 1 33 0 238 269 0 30 chr11 17264178 17264245 -133519308 - MIR SINE MIR -112 150 86 656 162 17 8 chr11 17264424 17264541 -133519012 + MLT1B LTR MaLR 1 118 -272 654 37 0 0 chr11 17264541 17264622 -133518931 + (GGAA)n Simple_repeat Simple_repeat 4 84 0 5668 75 21 25 chr11 17264654 17265524 -133518029 + SVA Other Other 1 866 -520 6534 57 11 64 chr11 17265541 17266548 -133517005 + SVA Other Other 433 1386 0 1378 180 50 32 chr11 17266563 17266765 -133516788 + MLT1B LTR MaLR 108 318 -72 2241 102 0 0 chr11 17266765 17267069 -133516484 - AluSx SINE Alu -8 304 1 1378 180 50 32 chr11 17267069 17267144 -133516409 + MLT1B LTR MaLR 318 390 0 456 224 218 42 chr11 17267270 17267435 -133516118 + MIR SINE MIR 50 243 -19 249 242 169 8 chr11 17267844 17267968 -133515585 + MIR3 SINE MIR 22 165 -43 331 263 127 52 chr11 17268421 17268634 -133514919 - MIR SINE MIR -14 248 20 1165 144 39 0 chr11 17268860 17269040 -133514513 + MER20 DNA MER1_type 4 190 -29 310 205 86 51 chr11 17269139 17269256 -133514297 + MIR SINE MIR 30 147 -61 215 345 36 0 chr11 17269273 17269357 -133514196 - MER5A DNA MER1_type -1 188 102 603 224 60 8 chr11 17270446 17270580 -133512973 + MER5B DNA MER1_type 38 178 0 380 266 42 42 chr11 17271816 17271959 -133511594 + L3b LINE CR1 1281 1423 -160 430 274 40 23 chr11 17272238 17272413 -133511140 + L1ME4a LINE L1 5710 5887 -234 289 266 154 14 chr11 17272430 17272573 -133510980 + L1ME4a LINE L1 5955 6117 -4 377 276 12 26 chr11 17273037 17273183 -133510370 - MIR SINE MIR -62 146 12 306 190 174 58 chr11 17273479 17273600 -133509953 - MIR SINE MIR -81 181 47 7901 15 21 0 chr11 17273639 17274624 -133508929 - L1PA3 LINE L1 -4 6151 5162 615 313 61 0 chr11 17274659 17274857 -133508696 + MIR SINE MIR 21 230 -32 2005 135 0 0 chr11 17275210 17275513 -133508040 + AluSx SINE Alu 1 303 -9 279 260 82 0 chr11 17275530 17275603 -133507950 + L2 LINE L2 3180 3258 -55 2389 171 100 7 chr11 17275605 17276067 -133507486 - MLT1D LTR MaLR 0 505 1 196 296 0 0 chr11 17276067 17276111 -133507442 + L2 LINE L2 3215 3258 -14 227 283 47 47 chr11 17276711 17276817 -133506736 + MIR SINE MIR 39 144 -118 2119 114 0 10 chr11 17277202 17277510 -133506043 + AluSq SINE Alu 1 305 -8 388 293 56 50 chr11 17277553 17277670 -133505883 + MIR3 SINE MIR 30 149 -59 1395 181 43 26 chr11 17277670 17277974 -133505579 + AluJo SINE Alu 3 311 -1 388 293 56 50 chr11 17277974 17278019 -133505534 + MIR3 SINE MIR 149 192 -16 443 251 193 11 chr11 17278256 17278443 -133505110 + MIR SINE MIR 42 262 0 346 288 88 24 chr11 17278439 17278564 -133504989 + L2 LINE L2 3104 3236 -36 * 197 232 87 58 chr11 17278910 17278979 -133504574 + MIR SINE MIR 38 108 -100 312 314 124 0 chr11 17280065 17280186 -133503367 - MIR SINE MIR -60 202 67 464 267 144 44 chr11 17280561 17280741 -133502812 - MIR SINE MIR -34 228 31 266 332 21 75 chr11 17284748 17284935 -133498618 - L2 LINE L2 -84 3188 3012 251 352 19 9 chr11 17285176 17285284 -133498269 + MIR SINE MIR 17 125 -83 754 178 51 81 chr11 17285284 17285481 -133498072 + AluJo SINE Alu 112 302 -10 886 243 49 8 chr11 17285956 17286219 -133497334 + L1ME4a LINE L1 5571 5844 -277 882 181 0 12 chr11 17286451 17286611 -133496942 + FRAM SINE Alu 8 165 -11 1636 151 26 26 chr11 17286726 17287037 -133496516 - AluJb SINE Alu -1 311 1 198 0 0 0 chr11 17287186 17287208 -133496345 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 372 226 135 15 chr11 17287213 17287346 -133496207 + L1ME4a LINE L1 5973 6121 0 2389 72 0 3 chr11 17288005 17288312 -133495241 + AluSc SINE Alu 1 306 -3 955 184 0 0 chr11 17288580 17288754 -133494799 + FRAM SINE Alu 1 172 -4 21 0 0 0 chr11 17289100 17289121 -133494432 + AT_rich Low_complexity Low_complexity 1 21 0 409 324 64 6 chr11 17289448 17289621 -133493932 - MER5A DNA MER1_type 0 189 7 1548 156 42 39 chr11 17289723 17289851 -133493702 + AluSx SINE Alu 1 127 -185 252 22 43 22 chr11 17289851 17289897 -133493656 + (CAAAA)n Simple_repeat Simple_repeat 5 51 0 1548 156 42 39 chr11 17289897 17290075 -133493478 + AluSx SINE Alu 127 308 -4 522 272 103 5 chr11 17290356 17290551 -133493002 + MIR SINE MIR 49 262 0 1753 162 0 23 chr11 17290560 17290863 -133492690 - AluJo SINE Alu -12 300 5 489 293 273 5 chr11 17290869 17291384 -133492169 - L2 LINE L2 -6 3307 2648 864 248 62 9 chr11 17291384 17291610 -133491943 - MIR SINE MIR -1 261 24 913 310 47 45 chr11 17291618 17292044 -133491509 - L2 LINE L2 -648 2666 2240 1897 108 47 0 chr11 17293435 17293712 -133489841 + AluSx SINE Alu 1 290 -22 2206 100 0 6 chr11 17294403 17294714 -133488839 + AluSg SINE Alu 2 310 0 236 217 0 33 chr11 17295236 17295296 -133488257 + MIR SINE MIR 78 135 -73 420 268 131 44 chr11 17295539 17295722 -133487831 - L2 LINE L2 0 3313 3115 2196 103 3 0 chr11 17295892 17296193 -133487360 - AluSp SINE Alu -9 304 3 1793 167 0 10 chr11 17297417 17297728 -133485825 + AluSx SINE Alu 1 308 -4 462 317 8 0 chr11 17298387 17298510 -133485043 + L2 LINE L2 3129 3252 -20 2143 98 7 10 chr11 17298569 17298874 -133484679 - AluSx SINE Alu -8 304 1 287 261 235 39 chr11 17299513 17299666 -133483887 - L3 LINE CR1 -10 1567 1385 709 247 18 58 chr11 17299829 17300052 -133483501 - MIR SINE MIR 0 262 49 313 202 179 0 chr11 17300216 17300300 -133483253 + L2 LINE L2 3215 3313 0 721 269 148 9 chr11 17300300 17300516 -133483037 - MIR SINE MIR -8 254 9 1327 182 77 7 chr11 17301392 17301693 -133481860 - MER33 DNA MER1_type -15 309 1 319 232 61 127 chr11 17302146 17302327 -133481226 - MER5A DNA MER1_type -4 185 17 2179 100 0 0 chr11 17302358 17302649 -133480904 + AluSq SINE Alu 1 291 -22 1155 117 0 0 chr11 17302651 17302813 -133480740 + AluSg/x SINE Alu 134 295 -15 21 0 0 0 chr11 17302828 17302849 -133480704 + AT_rich Low_complexity Low_complexity 1 21 0 331 248 72 59 chr11 17303090 17303243 -133480310 - MIR SINE MIR -2 260 106 1765 134 4 0 chr11 17303260 17303522 -133480031 - AluSx SINE Alu -49 263 1 197 283 94 0 chr11 17303720 17303773 -133479780 + L2 LINE L2 3117 3174 -98 183 156 0 0 chr11 17303812 17303844 -133479709 + (TGGA)n Simple_repeat Simple_repeat 3 34 0 242 275 0 14 chr11 17305277 17305346 -133478207 + MER5A DNA MER1_type 18 85 -104 1144 90 28 11 chr11 17305418 17305595 -133477958 + L1MA8 LINE L1 5430 5609 -682 2125 125 0 0 chr11 17305595 17305906 -133477647 + AluSx SINE Alu 1 311 -1 2143 109 10 10 chr11 17305920 17306232 -133477321 + AluSx SINE Alu 1 312 0 2318 168 67 6 chr11 17306238 17306713 -133476840 + L1MA8 LINE L1 5769 6272 -19 278 299 13 0 chr11 17306846 17306923 -133476630 + (CA)n Simple_repeat Simple_repeat 1 78 0 237 33 0 0 chr11 17306936 17306966 -133476587 + (CA)n Simple_repeat Simple_repeat 2 31 0 422 265 63 63 chr11 17307666 17307855 -133475698 - MER5A DNA MER1_type 0 189 1 196 299 143 41 chr11 17307898 17308045 -133475508 - L2 LINE L2 0 3313 3152 588 267 128 0 chr11 17309328 17309523 -133474030 - MIR SINE MIR -2 260 41 210 71 0 0 chr11 17309636 17309664 -133473889 + (ATG)n Simple_repeat Simple_repeat 3 30 0 223 351 13 0 chr11 17309811 17309888 -133473665 - MIR SINE MIR -171 91 14 973 246 124 75 chr11 17310368 17310836 -133472717 + MLT1J LTR MaLR 21 511 0 1075 199 77 9 chr11 17310895 17311116 -133472437 - MER46A DNA MER2_type 0 236 1 23 0 0 0 chr11 17311202 17311225 -133472328 + AT_rich Low_complexity Low_complexity 1 23 0 283 296 7 59 chr11 17311355 17311490 -133472063 - L2 LINE L2 -213 3059 2932 22 56 0 0 chr11 17311933 17311969 -133471584 + AT_rich Low_complexity Low_complexity 1 36 0 1654 186 20 0 chr11 17312520 17312637 -133470916 + AluJo SINE Alu 1 114 -198 192 40 0 0 chr11 17312637 17312662 -133470891 + (CAA)n Simple_repeat Simple_repeat 3 27 0 1654 186 20 0 chr11 17312662 17312840 -133470713 + AluJo SINE Alu 114 302 -10 2355 70 0 3 chr11 17312977 17313276 -133470277 - AluSg SINE Alu -12 298 1 476 331 69 60 chr11 17313520 17313837 -133469716 + L2 LINE L2 2953 3272 0 563 168 97 0 chr11 17314195 17314308 -133469245 + FLAM_A SINE Alu 13 136 -6 730 212 0 0 chr11 17314472 17314604 -133468949 - FLAM_A SINE Alu -1 132 1 206 333 39 29 chr11 17314719 17314821 -133468732 - MIR SINE MIR -90 118 16 1213 286 47 15 chr11 17315486 17315974 -133467579 + L1MB5 LINE L1 5660 6166 -8 2208 113 0 3 chr11 17315978 17316289 -133467264 - AluSg SINE Alu 0 310 1 1816 175 0 3 chr11 17316320 17316629 -133466924 + AluJb SINE Alu 1 308 -4 426 239 77 65 chr11 17316682 17316929 -133466624 + L1ME4a LINE L1 5872 6121 0 271 281 24 0 chr11 17317003 17317085 -133466468 + L1ME4a LINE L1 5969 6052 -69 1485 95 59 0 chr11 17317367 17317588 -133465965 - L1PA14 LINE L1 0 6161 5928 686 287 79 5 chr11 17320028 17320244 -133463309 + MIR SINE MIR 20 251 -11 543 242 115 45 chr11 17320424 17320673 -133462880 + MIR SINE MIR 2 261 -1 1875 150 7 0 chr11 17320761 17321047 -133462506 - AluSx SINE Alu -24 288 1 180 245 41 0 chr11 17321304 17321353 -133462200 + MIR SINE MIR 99 149 -59 3183 175 30 17 chr11 17322164 17322764 -133460789 - L1MB4 LINE L1 -80 6100 5493 322 273 20 0 chr11 17323072 17323171 -133460382 + Charlie7 DNA MER1_type 1 101 -2511 303 241 241 8 chr11 17323163 17323296 -133460257 + Charlie7 DNA MER1_type 2434 2597 -15 * 1836 136 7 45 chr11 17323313 17323622 -133459931 + AluSx SINE Alu 1 297 -15 464 313 51 42 chr11 17323940 17324157 -133459396 + MIR SINE MIR 13 231 -31 2154 106 0 0 chr11 17324187 17324480 -133459073 + AluSx SINE Alu 1 293 -19 360 64 0 0 chr11 17324567 17324614 -133458939 + (TG)n Simple_repeat Simple_repeat 2 48 0 194 296 209 9 chr11 17327199 17327314 -133456239 - L3b LINE CR1 -195 1388 1251 447 318 201 7 chr11 17327503 17327811 -133455742 + L3 LINE CR1 709 1076 -501 572 269 20 45 chr11 17328002 17328203 -133455350 + MLT1K LTR MaLR 393 588 0 378 294 160 9 chr11 17328204 17328435 -133455118 + L3 LINE CR1 1094 1359 -218 282 283 30 60 chr11 17328497 17328663 -133454890 + MIR SINE MIR 40 200 -62 2038 145 0 25 chr11 17328663 17328980 -133454573 + AluJb SINE Alu 1 309 -3 239 242 176 13 chr11 17329094 17329247 -133454306 + L1ME4a LINE L1 5941 6118 -3 311 305 30 0 chr11 17329574 17329705 -133453848 - L1ME4a LINE L1 -223 5898 5764 29 70 0 0 chr11 17330001 17330058 -133453495 + AT_rich Low_complexity Low_complexity 1 57 0 2083 154 3 0 chr11 17330109 17330408 -133453145 - AluSx SINE Alu -11 301 2 2033 138 3 10 chr11 17330411 17330708 -133452845 - AluJb SINE Alu -17 295 1 1711 161 20 37 chr11 17330709 17331007 -133452546 - AluJo SINE Alu -19 293 1 531 150 71 18 chr11 17331832 17331945 -133451608 - MER5B DNA MER1_type -3 175 57 906 180 0 30 chr11 17332401 17332568 -133450985 + AluJb SINE Alu 136 297 -15 544 16 0 0 chr11 17332707 17332769 -133450784 - U6 snRNA snRNA -1 106 45 748 233 17 47 chr11 17332773 17333035 -133450518 - L1MD2 LINE L1 -51 6115 6020 505 162 0 27 chr11 17333046 17333157 -133450396 - L1MD2 LINE L1 -268 5974 5867 250 253 46 35 chr11 17333236 17333323 -133450230 + L1ME4a LINE L1 5762 5849 -272 456 195 0 0 chr11 17333401 17333478 -133450075 - MER2 DNA MER2_type -262 83 7 568 196 211 0 chr11 17333485 17333684 -133449869 + L1ME4a LINE L1 5864 6104 -17 197 324 49 20 chr11 17334390 17334492 -133449061 + MIR3 SINE MIR 81 185 -23 293 226 140 21 chr11 17334668 17334761 -133448792 + L2 LINE L2 3210 3313 0 197 358 25 0 chr11 17335403 17335484 -133448069 + L2 LINE L2 3171 3253 -19 509 261 42 21 chr11 17335645 17335787 -133447766 + MIR SINE MIR 54 198 -64 489 263 16 41 chr11 17336439 17336633 -133446920 - L1ME LINE L1 -312 5809 5621 2094 96 30 0 chr11 17336889 17337189 -133446364 - AluSg SINE Alu 0 308 1 368 237 140 0 chr11 17337292 17337385 -133446168 - MIR SINE MIR -63 145 40 295 215 132 0 chr11 17338071 17338241 -133445312 - MIR SINE MIR 0 262 31 1619 95 137 0 chr11 17338506 17338768 -133444785 + AluSq SINE Alu 1 298 -5 761 245 139 14 chr11 17339085 17339293 -133444260 - MIR SINE MIR -15 247 14 288 0 0 0 chr11 17340646 17340678 -133442875 + (CA)n Simple_repeat Simple_repeat 2 33 0 303 71 0 0 chr11 17340679 17340721 -133442832 + (GA)n Simple_repeat Simple_repeat 1 42 0 223 342 35 0 chr11 17340790 17340904 -133442649 + L2 LINE L2 2943 3060 -212 499 316 46 15 chr11 17341036 17341232 -133442321 + L3 LINE CR1 1316 1517 -60 1071 153 148 10 chr11 17341751 17341947 -133441606 + AluJo SINE Alu 85 307 -5 183 313 0 0 chr11 17341976 17342024 -133441529 - L2 LINE L2 -12 3260 3213 190 179 26 0 chr11 17342075 17342114 -133441439 - L2 LINE L2 -577 2737 2698 24 96 0 0 chr11 17342138 17342211 -133441342 + AT_rich Low_complexity Low_complexity 1 73 0 1068 220 183 42 chr11 17342216 17342713 -133440840 + L2 LINE L2 2698 3313 0 524 298 0 0 chr11 17342714 17342845 -133440708 - MIR SINE MIR -86 176 46 241 300 71 57 chr11 17342955 17343095 -133440458 + L2 LINE L2 3126 3267 -5 227 143 0 0 chr11 17343211 17343246 -133440307 + U2 snRNA snRNA 2 36 -152 274 268 98 9 chr11 17343669 17343781 -133439772 + L2 LINE L2 3191 3312 -1 412 224 40 40 chr11 17344493 17344618 -133438935 + MIR SINE MIR 16 140 -68 228 246 53 0 chr11 17345422 17345479 -133438074 + MIR SINE MIR 93 152 -56 197 284 55 55 chr11 17345512 17345639 -133437914 + L2 LINE L2 2933 3059 -213 351 235 20 59 chr11 17345988 17346090 -133437463 - MIR SINE MIR -145 117 20 267 79 0 0 chr11 17346271 17346309 -133437244 + (TTCC)n Simple_repeat Simple_repeat 1 38 0 2316 117 7 3 chr11 17346309 17346617 -133436936 - AluSq SINE Alu -4 309 1 886 269 203 7 chr11 17346617 17347026 -133436527 - L3 LINE CR1 -108 1469 981 589 313 24 29 chr11 17347119 17347327 -133436226 + MIR SINE MIR 13 219 -43 205 224 45 75 chr11 17347325 17347392 -133436161 - MIR SINE MIR -152 110 46 * 328 233 150 33 chr11 17347490 17347610 -133435943 + L2 LINE L2 3137 3270 -2 207 88 0 0 chr11 17348039 17348073 -133435480 + (TAAAAA)n Simple_repeat Simple_repeat 2 35 0 626 81 0 0 chr11 17348081 17348168 -133435385 + AluY SINE Alu 218 304 -7 1155 259 138 10 chr11 17349129 17349844 -133433709 - L2 LINE L2 -4 3309 2508 307 240 178 16 chr11 17350211 17350340 -133433213 + MIR SINE MIR 49 198 -64 2276 118 0 3 chr11 17350342 17350646 -133432907 + AluSx SINE Alu 1 303 -9 373 219 89 57 chr11 17350686 17350809 -133432744 + MIR SINE MIR 98 224 -38 373 172 232 0 chr11 17352810 17352909 -133430644 - L2 LINE L2 -19 3294 3173 * 655 246 134 22 chr11 17352905 17353137 -133430416 - MIR SINE MIR -3 259 2 305 258 0 0 chr11 17353178 17353244 -133430309 + L2 LINE L2 3202 3267 -5 352 284 52 9 chr11 17353965 17354081 -133429472 - MIR SINE MIR -10 252 132 2584 54 0 0 chr11 17354524 17354818 -133428735 + AluY SINE Alu 1 294 -17 722 197 81 73 chr11 17355810 17356057 -133427496 + MIR SINE MIR 12 255 -7 262 354 63 8 chr11 17357560 17357687 -133425866 - MIR SINE MIR -19 243 110 277 247 34 22 chr11 17357687 17357776 -133425777 - MER5A DNA MER1_type -3 186 97 2063 125 0 34 chr11 17357958 17358255 -133425298 - AluSx SINE Alu -13 299 13 548 191 88 41 chr11 17358582 17358729 -133424824 - MIR SINE MIR -99 163 10 230 345 109 0 chr11 17359055 17359174 -133424379 + L2 LINE L2 3141 3272 0 225 320 0 41 chr11 17359177 17359274 -133424279 - L3 LINE CR1 -89 1488 1396 960 209 0 11 chr11 17360128 17360305 -133423248 + FRAM SINE Alu 1 172 -4 292 303 26 92 chr11 17360350 17360502 -133423051 + MIR SINE MIR 24 165 -97 335 264 166 18 chr11 17360692 17360855 -133422698 - L1MC4 LINE L1 -66 7976 7790 2381 99 7 0 chr11 17360863 17361165 -133422388 - AluSp SINE Alu -9 304 1 613 200 132 77 chr11 17361351 17361571 -133421982 - MIR SINE MIR -11 251 20 2308 137 0 0 chr11 17362255 17362568 -133420985 - AluSq SINE Alu 0 313 1 202 344 0 0 chr11 17362571 17362632 -133420921 + MIR SINE MIR 83 143 -65 2259 113 0 7 chr11 17363123 17363423 -133420130 + AluSx SINE Alu 1 298 -14 1645 110 169 0 chr11 17363964 17364219 -133419334 + AluSq SINE Alu 1 298 -15 2234 117 3 0 chr11 17364222 17364521 -133419032 + AluSx SINE Alu 3 302 -10 470 186 41 21 chr11 17365060 17365205 -133418348 + MER45B DNA AcHobo 744 891 -149 1198 110 0 0 chr11 17365205 17365359 -133418194 - AluSp SINE Alu -20 293 140 608 184 25 108 chr11 17365386 17365450 -133418103 + MER45B DNA AcHobo 896 964 -617 1983 167 0 3 chr11 17365450 17365749 -133417804 - AluJb SINE Alu -14 298 1 608 184 25 108 chr11 17365749 17365761 -133417792 + MER45B DNA AcHobo 964 975 -606 511 92 0 0 chr11 17365761 17365837 -133417716 - MADE1 DNA Mariner -4 76 1 608 184 25 108 chr11 17365837 17365917 -133417636 + MER45B DNA AcHobo 975 1040 0 335 284 146 5 chr11 17367048 17367202 -133416351 + MIR SINE MIR 34 200 -62 294 315 85 8 chr11 17367247 17367377 -133416176 + MIR SINE MIR 122 261 -1 225 290 0 0 chr11 17367377 17367439 -133416114 + (TTA)n Simple_repeat Simple_repeat 3 64 0 1537 205 29 0 chr11 17367500 17367806 -133415747 - AluJo SINE Alu 0 314 1 2230 122 6 10 chr11 17367984 17368295 -133415258 + AluSx SINE Alu 1 310 -2 953 191 0 0 chr11 17368344 17368496 -133415057 + FRAM SINE Alu 1 152 -24 1785 291 207 16 chr11 17369152 17370593 -133412960 + L2 LINE L2 1561 3270 -43 286 216 208 16 chr11 17370935 17371060 -133412493 - L2 LINE L2 0 3272 3124 29 47 0 0 chr11 17371963 17372006 -133411547 + GC_rich Low_complexity Low_complexity 1 43 0 202 95 24 48 chr11 17372134 17372176 -133411377 + (CCCCCG)n Simple_repeat Simple_repeat 6 46 0 366 74 0 0 chr11 17372315 17372369 -133411184 + (CGGGGG)n Simple_repeat Simple_repeat 2 55 0 34 42 0 0 chr11 17372575 17372623 -133410930 + GC_rich Low_complexity Low_complexity 1 48 0 328 258 105 24 chr11 17372785 17372909 -133410644 + MIR SINE MIR 117 250 -12 443 284 147 25 chr11 17373135 17373420 -133410133 + L2 LINE L2 2987 3306 -7 2140 90 10 7 chr11 17373425 17373713 -133409840 + AluSq SINE Alu 5 293 -20 369 0 0 0 chr11 17373759 17373800 -133409753 + (CA)n Simple_repeat Simple_repeat 1 41 0 1431 255 72 43 chr11 17374263 17374428 -133409125 + L1MC4a LINE L1 5319 5478 -2330 2319 120 0 0 chr11 17374428 17374729 -133408824 + AluSx SINE Alu 1 301 -11 1431 255 72 43 chr11 17374729 17375100 -133408453 + L1MC4a LINE L1 5478 5877 -1931 1728 188 18 0 chr11 17375100 17375377 -133408176 + AluJo SINE Alu 1 282 -30 181 0 0 0 chr11 17375377 17375397 -133408156 + (TAAA)n Simple_repeat Simple_repeat 1 140 0 1431 255 72 43 chr11 17375397 17375442 -133408111 + L1MC4a LINE L1 5877 5919 -1889 3057 187 88 36 chr11 17375717 17375850 -133407703 + L1MD2 LINE L1 5457 5582 -777 2164 136 0 0 chr11 17375850 17376144 -133407409 - AluSx SINE Alu -18 294 1 3057 187 88 36 chr11 17376144 17376624 -133406929 + L1MD2 LINE L1 5582 6130 -229 1835 141 4 11 chr11 17376624 17376934 -133406619 - AluSx SINE Alu 0 314 7 3057 187 88 36 chr11 17376934 17377174 -133406379 + L1MD2 LINE L1 6130 6356 -3 319 261 18 27 chr11 17377612 17377723 -133405830 + MIR SINE MIR 1 110 -152 34 15 0 45 chr11 17378021 17378045 -133405508 + AT_rich Low_complexity Low_complexity 1 25 -39 1647 193 11 0 chr11 17378045 17378330 -133405223 - AluJb SINE Alu -24 288 1 34 15 0 45 chr11 17378330 17378353 -133405200 + AT_rich Low_complexity Low_complexity 25 47 -17 2332 90 3 0 chr11 17378353 17378642 -133404911 - AluSp SINE Alu -23 290 1 34 15 0 45 chr11 17378642 17378660 -133404893 + AT_rich Low_complexity Low_complexity 47 64 0 2685 185 36 38 chr11 17378663 17379194 -133404359 + LTR26 LTR ERV1 52 581 -22 807 204 117 128 chr11 17379501 17379829 -133403724 - MLT2C2 LTR ERVL -8 456 133 1796 154 3 31 chr11 17379829 17380122 -133403431 + AluJb SINE Alu 5 289 -23 807 204 117 128 chr11 17380122 17380254 -133403299 - MLT2C2 LTR ERVL -331 133 1 2289 242 38 35 chr11 17380589 17381250 -133402303 - L1MC4 LINE L1 -142 7900 7238 1912 210 103 64 chr11 17381253 17381788 -133401765 - L1MC4 LINE L1 -812 6996 6442 315 0 0 0 chr11 17382140 17382175 -133401378 + (CA)n Simple_repeat Simple_repeat 2 36 0 1808 163 0 35 chr11 17382262 17382581 -133400972 - AluJo SINE Alu -4 308 1 345 47 0 0 chr11 17382968 17383011 -133400542 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 221 217 50 0 chr11 17383241 17383301 -133400252 + MIR SINE MIR 130 192 -70 2138 109 24 3 chr11 17383562 17383856 -133399697 + AluSp SINE Alu 1 300 -13 1995 141 17 0 chr11 17384091 17384442 -133399111 - AluSx SINE Alu 0 356 1 183 200 25 0 chr11 17385022 17385062 -133398491 - MIR SINE MIR -67 141 101 1198 196 123 15 chr11 17385063 17385323 -133398230 + AluJb SINE Alu 1 288 -24 2415 77 0 0 chr11 17385329 17385626 -133397927 - AluY SINE Alu -14 297 1 24 53 0 0 chr11 17385626 17385664 -133397889 + AT_rich Low_complexity Low_complexity 1 38 0 46 83 0 0 chr11 17385675 17385784 -133397769 + AT_rich Low_complexity Low_complexity 1 109 0 553 272 136 31 chr11 17386018 17386275 -133397278 - AluJo SINE Alu -16 286 3 2048 146 0 7 chr11 17386393 17386694 -133396859 - AluSx SINE Alu -13 299 1 1070 106 0 7 chr11 17387073 17387215 -133396338 + AluSx SINE Alu 23 163 -149 180 237 0 0 chr11 17387247 17387285 -133396268 + MIR SINE MIR 90 127 -135 324 87 0 0 chr11 17387285 17387331 -133396222 + L1MB7 LINE L1 6111 6156 -28 2009 120 0 0 chr11 17387331 17387639 -133395914 - AluSx SINE Alu 0 318 11 1059 177 64 0 chr11 17387663 17387866 -133395687 + L1MD1 LINE L1 6027 6242 0 2277 114 3 0 chr11 17388036 17388343 -133395210 + AluSq SINE Alu 1 308 -5 2203 99 0 3 chr11 17388611 17388893 -133394660 + AluSx SINE Alu 1 281 -31 36 0 0 0 chr11 17388893 17388929 -133394624 + AT_rich Low_complexity Low_complexity 1 36 0 1102 171 0 0 chr11 17389219 17389394 -133394159 - FRAM SINE Alu -4 172 1 1365 106 0 0 chr11 17389443 17389623 -133393930 - AluSq SINE Alu -3 310 131 1936 98 0 0 chr11 17389995 17390241 -133393312 + AluSx SINE Alu 55 300 -12 2210 107 7 0 chr11 17390241 17390573 -133392980 + AluSg SINE Alu 1 334 0 503 289 116 34 chr11 17391077 17391465 -133392088 + L1MC/D LINE L1 5318 5737 -2071 896 217 100 23 chr11 17391490 17391709 -133391844 + L1MB5 LINE L1 4538 4788 -1358 1706 185 10 22 chr11 17391709 17392023 -133391530 + AluJb SINE Alu 1 310 -2 896 217 100 23 chr11 17392023 17392103 -133391450 + L1MB5 LINE L1 4788 4860 -1286 739 112 0 0 chr11 17392121 17392219 -133391334 - U6 snRNA snRNA -9 98 1 3602 178 84 20 chr11 17392221 17393047 -133390506 + L1MB5 LINE L1 4846 5768 -406 2548 61 0 0 chr11 17393047 17393344 -133390209 - AluY SINE Alu -14 297 1 3602 178 84 20 chr11 17393344 17393677 -133389876 + L1MB5 LINE L1 5768 6078 -96 2273 86 3 32 chr11 17394164 17394479 -133389074 - AluY SINE Alu -5 306 1 581 172 47 8 chr11 17394618 17394746 -133388807 + L1M4 LINE L1 4890 5022 -1124 737 217 13 7 chr11 17394746 17394898 -133388655 + FRAM SINE Alu 1 146 -30 541 240 89 39 chr11 17394979 17395237 -133388316 + L1M4 LINE L1 5061 5331 -815 2303 81 10 3 chr11 17395237 17395535 -133388018 + AluSx SINE Alu 1 300 -12 221 282 39 13 chr11 17395687 17395765 -133387788 - L2 LINE L2 -1 3312 3233 21 0 0 0 chr11 17396493 17396514 -133387039 + GC_rich Low_complexity Low_complexity 1 21 0 202 231 0 31 chr11 17396585 17396650 -133386903 + (CGGGG)n Simple_repeat Simple_repeat 5 67 0 424 202 13 48 chr11 17396762 17397175 -133386378 + A-rich Low_complexity Low_complexity 1 398 0 256 197 34 51 chr11 17397293 17397471 -133386082 + (CACAA)n Simple_repeat Simple_repeat 1 175 0 555 62 0 0 chr11 17397656 17397736 -133385817 + (A)n Simple_repeat Simple_repeat 1 80 0 42 57 0 0 chr11 17397754 17397824 -133385729 + AT_rich Low_complexity Low_complexity 1 70 0 2100 131 10 0 chr11 17397841 17398147 -133385406 + AluSx SINE Alu 1 309 -3 1070 212 28 5 chr11 17398147 17398359 -133385194 + AluJo SINE Alu 72 288 -24 45233 36 1 2 chr11 17398428 17404592 -133378961 - L1PA2 LINE L1 0 6155 1 1391 217 54 50 chr11 17404592 17404997 -133378556 + L1MC4 LINE L1 7099 7508 -534 2251 129 0 0 chr11 17404997 17405306 -133378247 - AluSx SINE Alu -3 309 1 1391 217 54 50 chr11 17405306 17405343 -133378210 + L1MC4 LINE L1 7508 7543 -499 368 200 35 0 chr11 17405352 17405467 -133378086 + (TA)n Simple_repeat Simple_repeat 1 119 0 2390 98 0 0 chr11 17405471 17405767 -133377786 + AluSg SINE Alu 1 296 -14 21575 138 28 20 chr11 17405782 17408279 -133375274 + L1M1 LINE L1 18 2493 -5072 2312 77 23 3 chr11 17408279 17408578 -133374975 + AluY SINE Alu 1 305 -6 21575 138 28 20 chr11 17408578 17408638 -133374915 + L1M1 LINE L1 2493 2551 -5014 1937 110 58 27 chr11 17408638 17408930 -133374623 + AluSg SINE Alu 1 301 -9 21575 138 28 20 chr11 17408930 17409497 -133374056 + L1M1 LINE L1 2551 3179 -4386 2296 81 16 23 chr11 17409497 17409807 -133373746 + AluSp SINE Alu 1 308 -5 21575 138 28 20 chr11 17409807 17410289 -133373264 + L1M1 LINE L1 3179 3656 -3909 1901 189 121 13 chr11 17410291 17410791 -133372762 - SATR1 Satellite Satellite 0 554 1 2451 164 98 17 chr11 17410818 17414102 -133369451 - SATR1 Satellite Satellite -393 3550 1 844 127 242 0 chr11 17414174 17414339 -133369214 - SATR1 Satellite Satellite -120 350 146 232 204 0 0 chr11 17414363 17414407 -133369146 - AluJ/monomer SINE Alu -255 44 1 3436 226 26 23 chr11 17414447 17415435 -133368118 + L1MB3 LINE L1 4818 5802 -381 1968 121 4 4 chr11 17415435 17415715 -133367838 + AluSx SINE Alu 1 280 -32 222 37 0 0 chr11 17415717 17415744 -133367809 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 3436 226 26 23 chr11 17415744 17415833 -133367720 + L1MB3 LINE L1 5802 5889 -294 2280 117 0 0 chr11 17415833 17416132 -133367421 + AluSx SINE Alu 3 301 -11 3436 226 26 23 chr11 17416132 17416385 -133367168 + L1MB3 LINE L1 5889 6156 -27 34 0 0 0 chr11 17416399 17416433 -133367120 + AT_rich Low_complexity Low_complexity 1 34 0 2339 95 0 3 chr11 17417827 17418123 -133365430 + AluSg SINE Alu 1 295 -15 190 327 44 26 chr11 17418500 17418613 -133364940 + L2 LINE L2 3158 3272 0 2216 94 0 10 chr11 17418675 17418972 -133364581 - AluSc SINE Alu -15 294 1 1300 56 0 0 chr11 17418999 17419160 -133364393 + L1PA5 LINE L1 5994 6154 0 23 0 0 0 chr11 17419496 17419519 -133364034 + AT_rich Low_complexity Low_complexity 1 23 0 6992 77 20 55 chr11 17419519 17421807 -133361746 - SVA Other Other -518 1386 57 570 15 0 0 chr11 17421807 17421874 -133361679 + (GGGAGA)n Simple_repeat Simple_repeat 1 67 0 2572 69 3 0 chr11 17423318 17423623 -133359930 + AluSp SINE Alu 1 306 -7 1260 215 219 25 chr11 17423641 17424600 -133358953 - SATR1 Satellite Satellite -2 1145 1 1405 214 237 43 chr11 17424631 17426615 -133356938 - SATR1 Satellite Satellite -4 2367 1 1173 204 264 18 chr11 17426653 17429185 -133354368 - SATR1 Satellite Satellite -10 3154 1 11508 170 32 31 chr11 17429185 17429332 -133354221 + L1 LINE L1 2242 2387 -3759 2174 125 0 6 chr11 17429332 17429644 -133353909 + AluSx SINE Alu 3 312 0 11508 170 32 31 chr11 17429644 17430024 -133353529 + L1 LINE L1 2387 2765 -3381 2220 120 3 0 chr11 17430024 17430325 -133353228 + AluSx SINE Alu 1 302 -10 11508 170 32 31 chr11 17430325 17430850 -133352703 + L1 LINE L1 2765 3288 -2858 2045 158 0 0 chr11 17430850 17431153 -133352400 + AluSx SINE Alu 1 303 -9 11508 170 32 31 chr11 17431153 17432454 -133351099 + L1 LINE L1 3288 4599 -1547 375 221 173 0 chr11 17432492 17432596 -133350957 - MER5A DNA MER1_type 0 189 68 1139 114 0 13 chr11 17432596 17432779 -133350774 - AluJb SINE Alu 0 312 134 205 241 12 96 chr11 17432779 17432862 -133350691 - MER5A DNA MER1_type -113 76 1 2248 103 0 3 chr11 17432938 17433240 -133350313 - AluSg SINE Alu -9 301 1 25 31 0 0 chr11 17433333 17433365 -133350188 + AT_rich Low_complexity Low_complexity 1 32 0 206 296 0 0 chr11 17433398 17433442 -133350111 + L2 LINE L2 3210 3253 -19 433 273 45 0 chr11 17433539 17433649 -133349904 - L2 LINE L2 -10 3303 3189 2221 127 0 16 chr11 17434202 17434517 -133349036 - AluSx SINE Alu -2 310 1 358 298 149 12 chr11 17434677 17434838 -133348715 + MIR3 SINE MIR 20 202 -6 591 126 0 0 chr11 17434952 17435047 -133348506 + (TCTA)n Simple_repeat Simple_repeat 2 96 0 22 0 0 0 chr11 17435078 17435100 -133348453 + AT_rich Low_complexity Low_complexity 1 22 0 2140 117 0 14 chr11 17435102 17435393 -133348160 + AluSx SINE Alu 1 287 -25 1108 202 0 5 chr11 17436212 17436415 -133347138 - AluJo SINE Alu -94 218 17 2028 133 0 0 chr11 17436435 17436737 -133346816 + AluSx SINE Alu 5 306 0 2157 103 17 0 chr11 17436747 17437038 -133346515 + AluSx SINE Alu 1 296 -16 446 288 86 50 chr11 17437643 17437865 -133345688 - L2 LINE L2 -3 3269 3040 1543 231 100 45 chr11 17437926 17438027 -133345526 - MLT1G LTR MaLR 0 590 496 900 149 0 8 chr11 17438027 17438161 -133345392 + FLAM_C SINE Alu 1 133 0 1543 231 100 45 chr11 17438161 17438591 -133344962 - MLT1G LTR MaLR -94 496 30 1295 177 139 4 chr11 17438620 17438886 -133344667 - AluJo SINE Alu -10 302 1 2167 119 0 7 chr11 17439070 17439373 -133344180 - AluSx SINE Alu -1 311 11 426 229 61 23 chr11 17439386 17439517 -133344036 + MIR SINE MIR 63 198 -64 1363 192 69 10 chr11 17439519 17439810 -133343743 - MER44D DNA MER2_type -2 607 30 2233 113 0 0 chr11 17439849 17440142 -133343411 + AluSx SINE Alu 1 293 -19 1532 218 52 0 chr11 17440171 17440497 -133343056 - MER63 DNA MER1_type 0 1062 720 1020 205 59 72 chr11 17440497 17440872 -133342681 + HAL1 LINE L1 1208 1577 -930 2404 76 10 3 chr11 17440872 17441176 -133342377 + AluSq SINE Alu 1 306 -7 594 232 53 16 chr11 17441190 17441380 -133342173 - L2 LINE L2 -983 2331 2135 361 243 92 53 chr11 17441380 17441532 -133342021 + HAL1 LINE L1 1679 1836 -671 404 267 140 20 chr11 17441547 17441847 -133341706 + HAL1 LINE L1 1864 2199 -308 2257 151 30 10 chr11 17441877 17442275 -133341278 + L1MB5 LINE L1 5625 6030 -144 614 129 40 20 chr11 17442276 17442377 -133341176 - FLAM_C SINE Alu -15 128 26 865 152 21 7 chr11 17442386 17442531 -133341022 + L1MB5 LINE L1 6022 6168 -6 2308 97 0 0 chr11 17442566 17442856 -133340697 + AluSg SINE Alu 1 290 -20 1766 165 7 0 chr11 17442985 17443258 -133340295 + AluSx SINE Alu 1 275 -37 1617 121 15 26 chr11 17443309 17443574 -133339979 + AluSq SINE Alu 45 306 -7 2238 80 0 0 chr11 17443576 17443850 -133339703 + AluY SINE Alu 1 274 -37 1658 122 173 0 chr11 17444026 17444280 -133339273 - AluSx SINE Alu -4 298 1 610 51 26 0 chr11 17444666 17444744 -133338809 - MADE1 DNA Mariner 0 80 1 441 132 33 88 chr11 17445364 17445455 -133338098 - U14 snRNA snRNA -1 86 1 499 191 145 40 chr11 17445569 17445721 -133337832 + MER58A DNA MER1_type 30 197 -27 439 133 33 78 chr11 17446489 17446579 -133336974 - U14 snRNA snRNA -1 86 1 201 260 96 0 chr11 17446621 17446694 -133336859 - MIR SINE MIR -4 258 179 2100 89 7 14 chr11 17446827 17447109 -133336444 + AluSx SINE Alu 12 291 -21 1310 82 12 0 chr11 17447110 17447281 -133336272 + AluSq SINE Alu 127 299 -14 722 178 82 0 chr11 17447281 17447416 -133336137 - FRAM SINE Alu -30 146 1 218 283 117 0 chr11 17447444 17447504 -133336049 + L2 LINE L2 3242 3308 -5 536 281 16 47 chr11 17447575 17447767 -133335786 + MIR SINE MIR 44 229 -33 2360 68 7 0 chr11 17449181 17449476 -133334077 - AluSp SINE Alu -16 297 1 1161 159 31 9 chr11 17449496 17449722 -133333831 + AluJb SINE Alu 82 312 0 2505 41 0 3 chr11 17449950 17450241 -133333312 + AluY SINE Alu 1 290 -21 624 270 206 48 chr11 17450433 17451283 -133332270 + L2 LINE L2 2293 3312 -1 2280 81 10 3 chr11 17451433 17451731 -133331822 - AluSx SINE Alu -12 300 1 890 159 114 57 chr11 17452022 17452267 -133331286 - L1MB7 LINE L1 -16 6168 5910 2105 78 4 0 chr11 17452268 17452526 -133331027 + AluSg SINE Alu 1 259 -51 226 173 0 120 chr11 17452530 17452605 -133330948 - AluSg/x SINE Alu -151 149 84 1031 189 45 5 chr11 17452605 17452806 -133330747 - AluJo SINE Alu -92 220 12 549 122 0 0 chr11 17452823 17452905 -133330648 - L1MB7 LINE L1 -311 5867 5786 270 0 0 0 chr11 17452906 17452936 -133330617 + (T)n Simple_repeat Simple_repeat 1 30 0 1642 74 5 0 chr11 17452943 17453145 -133330408 - AluSp SINE Alu -110 203 1 861 127 63 21 chr11 17453154 17453296 -133330257 - AluSx SINE Alu -11 299 152 327 231 58 29 chr11 17453298 17453402 -133330151 - L1MB7 LINE L1 -54 6130 6024 1140 104 0 37 chr11 17453405 17453569 -133329984 - AluSx SINE Alu -154 158 1 1672 153 51 69 chr11 17453569 17453883 -133329670 - L1MB7 LINE L1 -815 5331 5026 921 183 12 30 chr11 17453883 17454052 -133329501 - FRAM SINE Alu 0 166 1 1672 153 51 69 chr11 17454052 17454187 -133329366 - L1MB7 LINE L1 -1120 5026 4890 2023 128 7 26 chr11 17454326 17454632 -133328921 + AluJb SINE Alu 1 300 -12 228 259 0 0 chr11 17454633 17454687 -133328866 + L1MDa LINE L1 1644 1697 -4843 319 235 31 41 chr11 17454687 17454785 -133328768 + L1MC5 LINE L1 7805 7901 -60 2060 100 24 14 chr11 17455169 17455282 -133328271 + AluSx SINE Alu 1 111 -201 1856 203 109 18 chr11 17455282 17455731 -133327822 + LTR2B LTR ERV1 1 490 0 2060 100 24 14 chr11 17455731 17455908 -133327645 + AluSx SINE Alu 111 294 -18 2365 75 24 0 chr11 17457776 17458069 -133325484 - AluSq SINE Alu -13 300 1 237 108 0 0 chr11 17459178 17459215 -133324338 + (TG)n Simple_repeat Simple_repeat 1 37 0 2136 122 7 0 chr11 17459714 17460010 -133323543 + AluSp SINE Alu 1 298 -15 322 330 20 10 chr11 17460067 17460167 -133323386 + L3 LINE CR1 1446 1546 -31 1951 141 0 30 chr11 17460270 17460574 -133322979 - AluJb SINE Alu -17 295 1 1518 109 23 5 chr11 17460601 17460821 -133322732 + L1PA10 LINE L1 5944 6167 -1 1734 122 79 36 chr11 17461925 17462204 -133321349 + AluSx SINE Alu 1 291 -21 584 100 0 0 chr11 17462321 17462401 -133321152 - MADE1 DNA Mariner 0 80 1 2363 62 10 3 chr11 17462801 17463091 -133320462 - AluY SINE Alu -19 292 1 1748 157 3 33 chr11 17463166 17463465 -133320088 - AluJb SINE Alu -21 291 2 199 372 21 0 chr11 17463595 17463689 -133319864 - L2 LINE L2 0 3272 3177 2138 108 11 0 chr11 17463969 17464255 -133319298 + AluSx SINE Alu 1 289 -23 1529 189 3 57 chr11 17464494 17464811 -133318742 + AluJb SINE Alu 1 300 -12 2189 77 0 54 chr11 17464821 17465156 -133318397 + AluY SINE Alu 1 319 0 1596 141 22 32 chr11 17465161 17465438 -133318115 + AluSx SINE Alu 3 276 -36 278 80 20 0 chr11 17465448 17465498 -133318055 + (TAAAA)n Simple_repeat Simple_repeat 5 55 0 2205 115 3 0 chr11 17465569 17465864 -133317689 - AluSx SINE Alu -16 296 1 2110 114 6 16 chr11 17467158 17467473 -133316080 + AluSx SINE Alu 1 312 0 1542 211 47 19 chr11 17467723 17468084 -133315469 + MLT1A2 LTR MaLR 3 373 -1 2256 97 3 0 chr11 17468431 17468721 -133314832 - AluSp SINE Alu -22 291 1 1132 130 6 12 chr11 17468922 17469091 -133314462 + AluSg/x SINE Alu 130 297 -13 21 0 0 0 chr11 17469185 17469206 -133314347 + AT_rich Low_complexity Low_complexity 1 21 0 1756 116 0 32 chr11 17469797 17470047 -133313506 - AluSx SINE Alu -70 242 1 1841 167 13 10 chr11 17470057 17470356 -133313197 - L1PB4 LINE L1 -2 6154 5855 682 231 182 11 chr11 17470400 17470664 -133312889 - L1ME3A LINE L1 0 6170 5862 2569 64 0 0 chr11 17471117 17471428 -133312125 - AluY SINE Alu 0 311 1 2484 42 0 3 chr11 17471680 17471969 -133311584 + AluY SINE Alu 1 288 -23 190 0 67 0 chr11 17471978 17472008 -133311545 + (CAA)n Simple_repeat Simple_repeat 2 33 0 651 247 109 10 chr11 17473078 17473126 -133310427 - MIR SINE MIR -1 261 219 216 97 0 0 chr11 17473126 17473157 -133310396 + (TG)n Simple_repeat Simple_repeat 2 32 0 651 247 109 10 chr11 17473157 17473333 -133310220 - MIR SINE MIR -43 219 19 459 231 12 162 chr11 17473813 17473968 -133309585 - MIR SINE MIR -41 221 115 2519 69 0 0 chr11 17473968 17474271 -133309282 + AluY SINE Alu 1 303 -8 459 231 12 162 chr11 17474271 17474362 -133309191 - MIR SINE MIR -147 115 12 3047 58 3 6 chr11 17474909 17475271 -133308282 - L1PA8 LINE L1 -8 6164 5804 2252 106 0 0 chr11 17475353 17475645 -133307908 + AluSx SINE Alu 3 294 -18 1885 167 7 3 chr11 17475653 17475958 -133307595 + AluSx SINE Alu 1 306 -6 1110 132 0 66 chr11 17476081 17476263 -133307290 - AluSq SINE Alu -141 172 3 2423 80 0 0 chr11 17476556 17476857 -133306696 + AluY SINE Alu 2 302 -9 26 64 0 0 chr11 17477167 17477214 -133306339 + AT_rich Low_complexity Low_complexity 1 47 0 2011 136 3 3 chr11 17477393 17477695 -133305858 - AluSx SINE Alu -10 302 1 230 121 0 0 chr11 17477696 17477729 -133305824 - U7 snRNA snRNA -29 34 2 268 262 75 96 chr11 17477731 17477845 -133305708 + L3 LINE CR1 741 851 -726 1364 190 9 58 chr11 17477845 17478171 -133305382 + AluJo SINE Alu 1 310 -2 268 262 75 96 chr11 17478171 17478243 -133305310 + L3 LINE CR1 851 923 -654 596 294 15 44 chr11 17478440 17478644 -133304909 + L3 LINE CR1 1278 1475 -102 184 371 57 0 chr11 17478906 17478976 -133304577 - MIR SINE MIR 0 262 189 1331 199 109 0 chr11 17479101 17479357 -133304196 - AluJo SINE Alu -26 286 3 2045 143 0 7 chr11 17479475 17479776 -133303777 - AluSx SINE Alu -13 299 1 1038 113 0 7 chr11 17480155 17480297 -133303256 + AluSx SINE Alu 23 163 -149 192 237 0 0 chr11 17480329 17480367 -133303186 + MIR SINE MIR 90 127 -135 316 87 0 0 chr11 17480367 17480413 -133303140 + L1MB7 LINE L1 6111 6156 -28 1770 167 0 0 chr11 17480413 17480721 -133302832 - AluSx SINE Alu 0 318 11 1021 177 64 0 chr11 17480745 17480948 -133302605 + L1MD1 LINE L1 6027 6242 0 2243 114 3 0 chr11 17481118 17481425 -133302128 + AluSq SINE Alu 1 308 -5 2255 109 0 3 chr11 17481694 17482005 -133301548 + AluSx SINE Alu 1 310 -2 1093 171 0 0 chr11 17482302 17482477 -133301076 - FRAM SINE Alu -4 172 1 1326 111 0 0 chr11 17482526 17482706 -133300847 - AluSq SINE Alu -3 310 131 1874 102 0 0 chr11 17483078 17483324 -133300229 + AluSx SINE Alu 55 300 -12 2178 107 7 0 chr11 17483324 17483652 -133299901 + AluSg SINE Alu 1 330 0 475 282 117 34 chr11 17484158 17484544 -133299009 + L1MC/D LINE L1 5320 5737 -2071 885 218 89 21 chr11 17484589 17484788 -133298765 + L1MB5 LINE L1 4562 4787 -1359 1683 185 10 22 chr11 17484788 17485102 -133298451 + AluJb SINE Alu 1 310 -2 885 218 89 21 chr11 17485102 17485182 -133298371 + L1MB5 LINE L1 4787 4860 -1286 729 112 0 0 chr11 17485200 17485298 -133298255 - U6 snRNA snRNA -9 98 1 3526 178 84 20 chr11 17485300 17486126 -133297427 + L1MB5 LINE L1 4846 5768 -406 2500 61 0 0 chr11 17486126 17486423 -133297130 - AluY SINE Alu -14 297 1 3526 178 84 20 chr11 17486423 17486756 -133296797 + L1MB5 LINE L1 5768 6078 -96 2605 49 3 0 chr11 17487243 17487548 -133296005 - AluY SINE Alu -5 306 1 1864 163 3 7 chr11 17487602 17487908 -133295645 - AluJb SINE Alu -7 305 1 225 188 0 21 chr11 17489752 17489800 -133293753 - L2 LINE L2 -4 3309 3263 222 91 0 0 chr11 17490026 17490059 -133293494 + (CATATA)n Simple_repeat Simple_repeat 1 33 0 267 221 105 12 chr11 17490217 17490303 -133293250 - L1MC4a LINE L1 -1846 5962 5869 1285 86 0 0 chr11 17490339 17490501 -133293052 - AluSg/x SINE Alu -6 304 143 374 173 14 14 chr11 17490502 17490583 -133292970 - Alu SINE Alu -251 51 1 526 288 119 33 chr11 17490592 17490640 -133292913 - L1MC4a LINE L1 -2020 5788 5746 1748 178 4 0 chr11 17490640 17490950 -133292603 - AluJo SINE Alu 0 313 3 526 288 119 33 chr11 17490950 17491352 -133292201 - L1MC4a LINE L1 -2062 5746 5298 24 32 0 0 chr11 17491496 17491527 -133292026 + AT_rich Low_complexity Low_complexity 1 31 0 1556 175 7 41 chr11 17492784 17493095 -133290458 - AluJb SINE Alu 0 301 1 775 229 16 27 chr11 17493127 17493315 -133290238 - MER58A DNA MER1_type -1 223 38 447 156 9 3 chr11 17493595 17493704 -133289849 - FRAM SINE Alu -36 140 1 675 198 71 52 chr11 17493724 17493992 -133289561 - L1MC5 LINE L1 -160 7801 7529 490 78 0 0 chr11 17493994 17494058 -133289495 - Alu SINE Alu -14 298 235 722 201 138 17 chr11 17494147 17494321 -133289232 + MER58A DNA MER1_type 30 224 0 698 186 100 41 chr11 17494326 17494546 -133289007 - L1MC5 LINE L1 -466 7495 7263 332 170 0 110 chr11 17494738 17494760 -133288793 - L1MC5 LINE L1 -741 7220 7197 1216 168 53 0 chr11 17494760 17494968 -133288585 + MER20 DNA MER1_type 1 219 0 332 170 0 110 chr11 17494968 17495045 -133288508 - L1MC5 LINE L1 -764 7197 7132 1769 116 64 19 chr11 17495059 17495326 -133288227 - AluSg SINE Alu -21 289 11 2090 147 3 0 chr11 17495380 17495687 -133287866 + AluSx SINE Alu 2 309 -3 308 265 49 0 chr11 17495688 17495790 -133287763 - L1MC5 LINE L1 -852 7109 7003 592 132 23 62 chr11 17495804 17495933 -133287620 + AluJb SINE Alu 2 125 -187 21 0 0 0 chr11 17496500 17496521 -133287032 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr11 17496811 17496844 -133286709 + AT_rich Low_complexity Low_complexity 1 33 0 2244 117 0 0 chr11 17496847 17497145 -133286408 - AluSx SINE Alu -14 298 1 869 249 36 12 chr11 17497445 17497698 -133285855 + MIR SINE MIR 3 261 -1 1344 167 4 17 chr11 17497842 17498076 -133285477 - AluSx SINE Alu -81 231 1 2161 93 21 3 chr11 17499128 17499419 -133284134 - AluSq SINE Alu -12 301 6 24 67 0 0 chr11 17499489 17499534 -133284019 + AT_rich Low_complexity Low_complexity 1 45 0 223 154 0 26 chr11 17499712 17499751 -133283802 + CT-rich Low_complexity Low_complexity 1 38 0 21 36 0 0 chr11 17499926 17499954 -133283599 + AT_rich Low_complexity Low_complexity 1 28 0 2367 105 0 6 chr11 17500060 17500374 -133283179 + AluSx SINE Alu 1 312 0 2273 98 0 3 chr11 17500442 17500739 -133282814 + AluSq SINE Alu 1 296 -17 2498 67 0 0 chr11 17500957 17501255 -133282298 - AluY SINE Alu -11 300 3 2853 13 0 0 chr11 17501852 17502163 -133281390 - AluYb8 SINE Alu -7 311 1 245 240 0 0 chr11 17502768 17502818 -133280735 + (TG)n Simple_repeat Simple_repeat 1 50 0 401 292 58 8 chr11 17502878 17502998 -133280555 + L2 LINE L2 3187 3312 -1 2141 130 0 0 chr11 17503180 17503473 -133280080 + AluSx SINE Alu 1 293 -19 1690 149 23 30 chr11 17503741 17503902 -133279651 - AluJo SINE Alu -12 300 140 2221 105 10 0 chr11 17503902 17504196 -133279357 - AluSp SINE Alu -16 297 1 1690 149 23 30 chr11 17504196 17504336 -133279217 - AluJo SINE Alu -172 140 1 315 0 0 0 chr11 17505213 17505248 -133278305 + (TG)n Simple_repeat Simple_repeat 2 36 0 28 0 0 0 chr11 17506156 17506184 -133277369 + AT_rich Low_complexity Low_complexity 1 28 0 2322 81 20 0 chr11 17506953 17507248 -133276305 - AluSx SINE Alu -11 301 1 513 251 5 82 chr11 17507263 17507458 -133276095 + LTR41 LTR ERVL 2 181 -592 1142 189 9 40 chr11 17508167 17508395 -133275158 - MER58A DNA MER1_type -3 221 1 2303 80 0 17 chr11 17508451 17508751 -133274802 - AluSq SINE Alu -18 295 1 2038 126 14 0 chr11 17508772 17509058 -133274495 - AluSx SINE Alu -18 294 5 709 199 0 22 chr11 17509672 17509808 -133273745 + FLAM_A SINE Alu 1 133 0 2105 222 39 16 chr11 17509856 17510373 -133273180 + L1MB8 LINE L1 5648 6176 -2 453 333 185 4 chr11 17510384 17510739 -133272814 - L2 LINE L2 -214 3099 2691 1074 153 38 0 chr11 17510805 17510988 -133272565 - AluSg/x SINE Alu -1 309 120 849 206 54 17 chr11 17510990 17511273 -133272280 - L1MD3 LINE L1 -1 7987 7488 1832 261 126 36 chr11 17511274 17511524 -133272029 - L2 LINE L2 -632 2682 2456 555 149 44 18 chr11 17511524 17511638 -133271915 + L1MC1 LINE L1 6217 6333 0 1832 261 126 36 chr11 17511638 17512072 -133271481 - L2 LINE L2 -858 2456 1937 417 191 0 5 chr11 17512076 17512256 -133271297 + AluJo SINE Alu 5 279 -33 219 36 0 0 chr11 17512256 17512284 -133271269 + (TCCA)n Simple_repeat Simple_repeat 3 30 0 795 235 86 8 chr11 17512288 17512522 -133271031 - L2 LINE L2 -1374 1940 1689 476 281 231 46 chr11 17512526 17513028 -133270525 + L2 LINE L2 2158 2752 -562 521 217 19 0 chr11 17513032 17513138 -133270415 - MER58B DNA MER1_type 0 341 234 2070 142 7 0 chr11 17513194 17513503 -133270050 + AluSx SINE Alu 1 311 -1 21 0 0 0 chr11 17513521 17513542 -133270011 + AT_rich Low_complexity Low_complexity 1 21 0 282 350 124 62 chr11 17513735 17514026 -133269527 + L2 LINE L2 2963 3271 -1 2155 125 3 3 chr11 17514150 17514461 -133269092 + AluSx SINE Alu 1 311 -1 2346 74 16 3 chr11 17514468 17514778 -133268775 + THE1C-int LTR MaLR 1263 1576 -4 1663 142 86 10 chr11 17514782 17515085 -133268468 + THE1C LTR MaLR 1 326 -49 1835 163 0 26 chr11 17515973 17516279 -133267274 + AluSx SINE Alu 5 302 -10 2091 97 38 0 chr11 17517474 17517762 -133265791 + AluSp SINE Alu 1 299 -14 672 106 0 92 chr11 17518400 17518541 -133265012 - Charlie5 DNA MER1_type 0 2624 2497 1299 149 47 8 chr11 17518541 17518776 -133264777 - MER2 DNA MER2_type 0 345 102 313 97 0 32 chr11 17518819 17518881 -133264672 + L1MA3 LINE L1 6246 6305 0 757 181 14 0 chr11 17518887 17519025 -133264528 - MER2 DNA MER2_type -190 155 16 496 159 0 0 chr11 17519188 17519276 -133264277 + AluSg/x SINE Alu 218 305 -4 22 56 0 0 chr11 17519546 17519582 -133263971 + AT_rich Low_complexity Low_complexity 1 36 0 1033 249 5 5 chr11 17521080 17521301 -133262252 + MIR SINE MIR 21 241 -21 360 118 73 0 chr11 17521386 17521454 -133262099 + MSTB1 LTR MaLR 360 432 0 556 110 30 0 chr11 17521680 17521780 -133261773 + L1MB3 LINE L1 6081 6183 0 2126 129 0 13 chr11 17522689 17522992 -133260561 + AluSq SINE Alu 3 301 -12 352 235 25 0 chr11 17523099 17523180 -133260373 - MIR3 SINE MIR 0 208 126 195 42 0 0 chr11 17523614 17523638 -133259915 + (TG)n Simple_repeat Simple_repeat 2 25 0 203 173 27 53 chr11 17524233 17524308 -133259245 + GA-rich Low_complexity Low_complexity 5 77 0 243 243 149 0 chr11 17524389 17524463 -133259090 + MLT1K LTR MaLR 504 588 0 275 308 75 50 chr11 17524477 17524597 -133258956 + MIR SINE MIR 21 143 -65 29 28 0 0 chr11 17524966 17525002 -133258551 + AT_rich Low_complexity Low_complexity 1 36 0 22 70 0 0 chr11 17525275 17525318 -133258235 + AT_rich Low_complexity Low_complexity 1 43 0 1495 183 16 0 chr11 17525923 17526175 -133257378 - AluJb SINE Alu -11 301 46 693 252 0 0 chr11 17526396 17526523 -133257030 + FLAM_A SINE Alu 1 127 -6 2169 93 0 0 chr11 17526749 17527019 -133256534 + AluSx SINE Alu 35 304 -8 40 0 0 20 chr11 17527594 17527605 -133255948 + AT_rich Low_complexity Low_complexity 1 11 -39 2441 62 7 0 chr11 17527605 17527895 -133255658 + AluSp SINE Alu 1 292 -21 40 0 0 20 chr11 17527895 17527934 -133255619 + AT_rich Low_complexity Low_complexity 11 50 0 758 216 68 5 chr11 17527945 17528135 -133255418 - MIR SINE MIR -60 202 1 960 222 80 42 chr11 17529277 17529671 -133253882 - MLT2D LTR ERVL -64 400 1 1607 195 19 7 chr11 17530085 17530392 -133253161 + AluJb SINE Alu 1 311 -1 2244 108 0 16 chr11 17531591 17531906 -133251647 + AluSx SINE Alu 1 310 -2 2432 139 26 3 chr11 17531981 17532368 -133251185 + MER57A LTR ERV1 8 403 0 219 259 24 71 chr11 17532404 17532489 -133251064 - L3 LINE CR1 -196 1381 1301 2008 117 3 7 chr11 17532562 17532874 -133250679 + AluSx SINE Alu 1 311 0 1414 172 20 63 chr11 17532945 17533247 -133250306 - AluJo SINE Alu -19 293 5 208 274 0 20 chr11 17533519 17533570 -133249983 - MIR3 SINE MIR -48 160 111 242 303 92 9 chr11 17533575 17533684 -133249869 - L3 LINE CR1 -341 1236 1119 1117 200 0 10 chr11 17533711 17533916 -133249637 + AluJb SINE Alu 104 306 -6 261 302 16 0 chr11 17534950 17535013 -133248540 - L3 LINE CR1 -115 1462 1399 2283 80 10 10 chr11 17535042 17535344 -133248209 + AluSp SINE Alu 11 312 -1 617 179 179 34 chr11 17535440 17535675 -133247878 - L1MC5 LINE L1 -48 7913 7645 355 218 13 13 chr11 17535675 17535753 -133247800 + MIR SINE MIR 104 181 -81 1806 174 0 7 chr11 17536515 17536802 -133246751 - AluJb SINE Alu -21 291 7 2075 119 7 0 chr11 17536876 17537161 -133246392 + AluSp SINE Alu 1 287 -26 2482 78 0 0 chr11 17537835 17538141 -133245412 + AluY SINE Alu 1 306 -5 310 286 130 34 chr11 17540289 17540357 -133243196 + MIR SINE MIR 2 62 -200 2528 60 0 0 chr11 17540357 17540655 -133242898 + AluY SINE Alu 1 298 -13 310 286 130 34 chr11 17540655 17540824 -133242729 + MIR SINE MIR 62 262 0 662 135 108 36 chr11 17541322 17541433 -133242120 - FLAM_C SINE Alu -13 120 2 240 252 52 26 chr11 17541507 17541622 -133241931 + L1MC4 LINE L1 7924 8041 -1 880 252 179 50 chr11 17541652 17542111 -133241442 + MLT1H LTR MaLR 36 547 -2 225 360 0 11 chr11 17542528 17542617 -133240936 + L2 LINE L2 2966 3053 -219 1297 250 76 17 chr11 17542847 17543191 -133240362 + MLT1K LTR MaLR 225 588 0 2094 86 0 76 chr11 17543333 17543661 -133239892 - AluSx SINE Alu 0 305 1 2041 105 7 11 chr11 17543846 17544159 -133239394 + AluSq SINE Alu 8 319 0 2165 116 0 10 chr11 17545224 17545526 -133238027 - AluSx SINE Alu -13 299 1 658 172 107 8 chr11 17545566 17545688 -133237865 + AluJo SINE Alu 2 135 -177 1575 193 13 29 chr11 17545714 17546030 -133237523 + AluJo SINE Alu 1 311 -1 747 249 69 11 chr11 17546124 17546313 -133237240 - MIR SINE MIR -27 235 36 24 53 0 0 chr11 17546404 17546442 -133237111 + AT_rich Low_complexity Low_complexity 1 38 0 2174 139 0 0 chr11 17547026 17547335 -133236218 + AluSx SINE Alu 1 309 -3 595 183 110 24 chr11 17547395 17547559 -133235994 - MER33 DNA MER1_type -124 200 23 24 0 0 0 chr11 17547723 17547747 -133235806 + AT_rich Low_complexity Low_complexity 1 24 0 1867 107 89 15 chr11 17547784 17547917 -133235636 - AluSx SINE Alu -22 290 168 2903 16 0 0 chr11 17547917 17548235 -133235318 - AluYb8 SINE Alu 0 318 1 1867 107 89 15 chr11 17548235 17548371 -133235182 - AluSx SINE Alu -144 168 1 1691 188 3 7 chr11 17548381 17548668 -133234885 - AluJo SINE Alu -26 286 1 1429 200 33 7 chr11 17548840 17549115 -133234438 - AluJo SINE Alu -30 282 1 285 324 0 0 chr11 17549291 17549359 -133234194 - L2 LINE L2 0 3313 3246 947 186 62 38 chr11 17549383 17549593 -133233960 + AluJb SINE Alu 87 301 -11 212 0 36 0 chr11 17549702 17549730 -133233823 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1956 118 0 0 chr11 17549745 17550000 -133233553 + AluSx SINE Alu 1 255 -57 512 211 111 65 chr11 17550005 17550204 -133233349 - MER21B LTR ERV1 -225 638 431 * 1184 211 56 9 chr11 17550197 17550554 -133232999 - MER21B LTR ERV1 -357 506 104 311 226 79 113 chr11 17550576 17550694 -133232859 + L1ME3A LINE L1 5786 5906 -264 721 179 0 17 chr11 17550694 17550811 -133232742 + FLAM_A SINE Alu 5 119 -14 311 226 79 113 chr11 17550811 17550824 -133232729 + L1ME3A LINE L1 5906 5918 -252 525 16 0 0 chr11 17550824 17550886 -133232667 + (CA)n Simple_repeat Simple_repeat 2 63 0 311 226 79 113 chr11 17550886 17550930 -133232623 + L1ME3A LINE L1 5918 5956 -214 2300 100 3 3 chr11 17550988 17551287 -133232266 + AluSp SINE Alu 1 299 -14 455 302 88 21 chr11 17551287 17551470 -133232083 + L1ME3A LINE L1 5966 6164 -6 1665 155 67 7 chr11 17551481 17551765 -133231788 + AluJb SINE Alu 1 301 -11 1865 176 3 13 chr11 17552010 17552322 -133231231 - AluJb SINE Alu -3 309 1 939 166 79 67 chr11 17552365 17552572 -133230981 + MER44D DNA MER2_type 1 204 -2287 2230 94 16 16 chr11 17552572 17552879 -133230674 + AluSx SINE Alu 1 307 -5 939 166 79 67 chr11 17552879 17552923 -133230630 + MER44D DNA MER2_type 204 525 -84 338 250 42 0 chr11 17552923 17552995 -133230558 + Tigger3b DNA MER2_type 2 76 -1155 1391 179 6 79 chr11 17552995 17553313 -133230240 + AluJo SINE Alu 1 295 -17 5155 112 41 88 chr11 17553358 17553832 -133229721 + Tigger3b DNA MER2_type 286 692 -2336 1520 182 17 31 chr11 17553832 17554123 -133229430 + AluJo SINE Alu 1 287 -25 5155 112 41 88 chr11 17554123 17554640 -133228913 + Tigger3b DNA MER2_type 692 1231 0 545 121 0 44 chr11 17554640 17554730 -133228823 + MER44D DNA MER2_type 523 608 -1 1293 242 99 40 chr11 17554893 17555657 -133227896 + L2 LINE L2 2518 3309 -4 1452 134 119 22 chr11 17555972 17556240 -133227313 + AluJb SINE Alu 1 294 -18 277 363 7 20 chr11 17556240 17556386 -133227167 - L2 LINE L2 -1031 2283 2140 1109 131 12 0 chr11 17556544 17556712 -133226841 - L1MB7 LINE L1 -2 6182 6013 2302 105 0 10 chr11 17557235 17557539 -133226014 + AluSx SINE Alu 1 301 -11 1625 129 0 0 chr11 17558513 17558738 -133224815 + AluSx SINE Alu 2 226 -86 608 153 68 8 chr11 17558761 17558879 -133224674 - L1MB7 LINE L1 -69 6115 5991 630 103 0 0 chr11 17558933 17559020 -133224533 + AluSx SINE Alu 224 310 -2 826 252 75 34 chr11 17559113 17559163 -133224390 + L1MCa LINE L1 880 926 -5681 2284 97 7 0 chr11 17559163 17559451 -133224102 + AluSx SINE Alu 1 290 -22 826 252 75 34 chr11 17559451 17559476 -133224077 + L1MCa LINE L1 926 949 -5658 2205 88 24 14 chr11 17559476 17559770 -133223783 + AluSx SINE Alu 1 297 -15 826 252 75 34 chr11 17559770 17560188 -133223365 + L1MCa LINE L1 949 1594 -5013 1103 272 127 46 chr11 17560398 17560879 -133222674 + MER77 LTR ERV1 80 599 -6 226 274 16 48 chr11 17560885 17560947 -133222606 + MER21A LTR ERV1 682 741 -190 1474 188 3 45 chr11 17561030 17561339 -133222214 + AluJb SINE Alu 1 296 -16 2010 143 10 0 chr11 17561633 17561926 -133221627 - AluSx SINE Alu -16 296 1 1344 158 122 83 chr11 17562033 17562443 -133221110 + MSTC LTR MaLR 3 428 0 2364 90 0 0 chr11 17562745 17563045 -133220508 + AluSc SINE Alu 1 300 -9 986 62 0 7 chr11 17563045 17563189 -133220364 + (GGGGA)n Simple_repeat Simple_repeat 5 147 0 199 82 0 61 chr11 17563199 17563248 -133220305 + (GAAAA)n Simple_repeat Simple_repeat 2 47 0 353 289 54 60 chr11 17563822 17563957 -133219596 + MIR3 SINE MIR 42 177 -31 2183 120 3 0 chr11 17563957 17564258 -133219295 + AluSq SINE Alu 1 302 -11 353 289 54 60 chr11 17564258 17564288 -133219265 + MIR3 SINE MIR 177 206 -2 2225 115 0 0 chr11 17564464 17564759 -133218794 + AluSc SINE Alu 1 295 -14 1805 144 0 72 chr11 17564769 17565088 -133218465 + AluSx SINE Alu 1 296 -16 2315 103 0 0 chr11 17565090 17565400 -133218153 + AluY SINE Alu 1 310 -1 21 36 0 0 chr11 17565531 17565559 -133217994 + AT_rich Low_complexity Low_complexity 1 28 0 509 340 79 14 chr11 17565592 17565807 -133217746 - L2 LINE L2 -544 2770 2542 2354 53 0 33 chr11 17565911 17566210 -133217343 - AluY SINE Alu -21 290 2 485 151 0 0 chr11 17566350 17566423 -133217130 + AluS SINE Alu 2 74 -237 1589 122 9 0 chr11 17566423 17566652 -133216901 - AluJb SINE Alu -81 231 1 2225 100 0 7 chr11 17567445 17567744 -133215809 - AluSx SINE Alu -15 297 1 327 258 153 24 chr11 17567744 17567868 -133215685 + MIR SINE MIR 79 218 -44 799 261 0 0 chr11 17567981 17568134 -133215419 + FAM SINE Alu 2 154 -31 183 42 0 0 chr11 17568136 17568160 -133215393 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2196 125 0 0 chr11 17568171 17568468 -133215085 + AluSx SINE Alu 3 299 -13 2886 163 73 16 chr11 17568481 17568993 -133214560 + L1MB4 LINE L1 5373 5971 -209 1885 92 138 0 chr11 17568993 17569254 -133214299 + AluSc SINE Alu 1 297 -12 2886 163 73 16 chr11 17569254 17569343 -133214210 + L1MB4 LINE L1 5971 6053 -127 1349 92 0 0 chr11 17569355 17569528 -133214025 + AluSg/x SINE Alu 119 291 -19 323 141 22 133 chr11 17569635 17569770 -133213783 + L1MD3 LINE L1 7876 7995 0 1454 155 0 106 chr11 17569781 17570130 -133213423 + L1ME1 LINE L1 5849 6160 -6 2230 117 0 0 chr11 17570252 17570552 -133213001 + AluSx SINE Alu 1 300 -12 2389 104 0 0 chr11 17570575 17570883 -133212670 + AluSc SINE Alu 1 308 -1 2334 100 0 3 chr11 17571294 17571604 -133211949 + AluSx SINE Alu 1 309 -3 1558 189 46 0 chr11 17571630 17571910 -133211643 + AluJb SINE Alu 5 297 -15 196 287 161 34 chr11 17571911 17572037 -133211516 + MIR SINE MIR 23 170 -84 964 118 0 15 chr11 17572532 17572667 -133210886 + FLAM_C SINE Alu 1 133 0 801 97 19 0 chr11 17573008 17573111 -133210442 - AluJo/FRAM SINE Alu -21 291 187 2490 60 0 7 chr11 17573112 17573413 -133210140 + AluY SINE Alu 1 299 -12 237 313 16 0 chr11 17573414 17573478 -133210075 - AluJ/FLAM SINE Alu -237 65 1 693 210 34 0 chr11 17573478 17573624 -133209929 + MER33 DNA MER1_type 1 144 -100 259 294 64 18 chr11 17573701 17573810 -133209743 - MIR SINE MIR -75 133 19 2177 113 10 0 chr11 17574217 17574510 -133209043 + AluSx SINE Alu 1 296 -16 2297 93 0 16 chr11 17574511 17574824 -133208729 + AluSc SINE Alu 1 308 -1 1949 122 31 7 chr11 17575161 17575448 -133208105 + AluSx SINE Alu 2 295 -17 298 135 0 0 chr11 17575874 17575926 -133207627 + Alu SINE Alu 251 302 0 25 31 0 0 chr11 17576822 17576854 -133206699 + GC_rich Low_complexity Low_complexity 1 32 0 240 149 21 0 chr11 17578102 17578149 -133205404 - MIR SINE MIR -112 150 103 565 151 17 8 chr11 17578890 17579009 -133204544 + CT-rich Low_complexity Low_complexity 3 122 0 2216 92 0 3 chr11 17579473 17579756 -133203797 - AluSp SINE Alu -11 302 21 807 238 34 21 chr11 17579898 17580147 -133203406 - MIR SINE MIR -10 252 1 1815 150 59 3 chr11 17580279 17580566 -133202987 - AluSx SINE Alu -5 307 5 495 298 93 36 chr11 17580631 17580839 -133202714 - L2 LINE L2 -215 3057 2862 809 152 8 0 chr11 17580839 17580964 -133202589 - FLAM_C SINE Alu -7 126 1 495 298 93 36 chr11 17580964 17581211 -133202342 - L2 LINE L2 -410 2862 2582 2230 96 3 0 chr11 17581233 17581515 -133202038 + AluSq SINE Alu 12 294 -19 1685 180 86 138 chr11 17581683 17582255 -133201298 - MLT1F1 LTR MaLR 0 567 1 271 289 13 0 chr11 17582318 17582394 -133201159 - L2 LINE L2 -298 2974 2898 672 240 88 59 chr11 17582541 17582587 -133200966 + L1MC4a LINE L1 5670 5713 -408 1815 142 16 128 chr11 17582587 17582708 -133200845 - MLT1B LTR MaLR 0 390 257 2151 123 7 0 chr11 17582708 17583008 -133200545 - AluSx SINE Alu -10 302 1 1815 142 16 128 chr11 17583008 17583322 -133200231 - MLT1B LTR MaLR -133 257 4 1593 256 47 14 chr11 17583322 17583751 -133199802 - LTR47B LTR ERVL 0 443 1 672 240 88 59 chr11 17583751 17584179 -133199374 + L1MC4a LINE L1 5712 5896 -225 803 41 0 0 chr11 17584183 17584280 -133199273 + L1PA8 LINE L1 6073 6169 -3 2363 65 17 3 chr11 17584367 17584657 -133198896 + AluSg SINE Alu 1 294 -16 356 264 11 11 chr11 17584663 17584750 -133198803 + Tigger2 DNA MER2_type 2622 2708 -10 1616 273 133 46 chr11 17584911 17585305 -133198248 + L2 LINE L2 1711 2069 -1245 2208 107 0 7 chr11 17585305 17585603 -133197950 - AluSx SINE Alu -16 296 1 1616 273 133 46 chr11 17585603 17586101 -133197452 + L2 LINE L2 2069 2681 -633 1872 139 0 4 chr11 17586138 17586411 -133197142 + AluJo SINE Alu 11 282 -30 1236 193 23 26 chr11 17586464 17586728 -133196825 + AluJo SINE Alu 42 304 -8 1091 266 97 30 chr11 17586730 17587288 -133196265 + L2 LINE L2 2708 3313 0 1900 181 0 0 chr11 17587377 17587676 -133195877 - AluJb SINE Alu -13 299 1 805 212 164 9 chr11 17587998 17588039 -133195514 - MIR SINE MIR 0 262 229 1993 141 0 3 chr11 17588039 17588381 -133195172 - AluJb SINE Alu 0 341 1 805 212 164 9 chr11 17588381 17588564 -133194989 - MIR SINE MIR -33 229 2 2052 184 56 37 chr11 17588697 17588998 -133194555 - Charlie4a DNA MER1_type -1453 508 193 2312 106 0 3 chr11 17588998 17589299 -133194254 + AluSx SINE Alu 1 300 -12 2052 184 56 37 chr11 17589299 17589480 -133194073 - Charlie4a DNA MER1_type -1768 193 17 2086 110 6 25 chr11 17589701 17590018 -133193535 + AluSq SINE Alu 1 311 -2 614 256 0 35 chr11 17590542 17590714 -133192839 - MIR SINE MIR 0 262 97 2163 122 0 7 chr11 17590870 17591173 -133192380 - AluSx SINE Alu -11 301 1 362 163 47 108 chr11 17591192 17591321 -133192232 - MLT1J1 LTR MaLR 0 446 326 515 236 65 0 chr11 17591407 17591530 -133192023 - MLT1J2 LTR MaLR -317 133 3 2589 54 0 0 chr11 17592571 17592868 -133190685 + AluY SINE Alu 1 297 -14 1360 108 0 0 chr11 17593289 17593465 -133190088 - AluSc SINE Alu -2 307 132 2236 100 0 50 chr11 17593465 17593784 -133189769 - AluSg SINE Alu -7 303 1 2468 77 3 0 chr11 17593784 17594080 -133189473 - AluSp SINE Alu -15 298 1 196 274 20 0 chr11 17594423 17594474 -133189079 + L2 LINE L2 3139 3190 -82 477 213 14 78 chr11 17594476 17594527 -133189026 - FLAM_A SINE Alu -170 132 79 2188 123 3 0 chr11 17594527 17594827 -133188726 - AluSg SINE Alu -9 301 1 477 213 14 78 chr11 17594827 17594916 -133188637 - FLAM_A SINE Alu -223 79 1 2291 112 0 0 chr11 17595503 17595807 -133187746 + AluSg SINE Alu 1 304 -6 458 239 103 0 chr11 17595926 17596063 -133187490 - FLAM_C SINE Alu 0 133 2 1336 226 0 3 chr11 17596073 17596360 -133187193 - AluSx SINE Alu -14 298 13 2984 162 26 32 chr11 17596460 17596484 -133187069 - L1MB7 LINE L1 -54 6130 6107 1904 173 0 3 chr11 17596484 17596797 -133186756 - AluSx SINE Alu 0 312 1 2984 162 26 32 chr11 17596797 17597359 -133186194 - L1MB7 LINE L1 -77 6107 5548 2515 82 0 0 chr11 17597453 17597758 -133185795 - AluSq SINE Alu -8 305 1 2006 100 4 7 chr11 17597758 17598027 -133185526 - AluSx SINE Alu -7 305 38 1907 121 11 4 chr11 17598131 17598404 -133185149 + AluSx SINE Alu 21 295 -17 26 0 0 0 chr11 17598460 17598486 -133185067 + AT_rich Low_complexity Low_complexity 1 26 0 2115 128 10 0 chr11 17598572 17598877 -133184676 + AluSx SINE Alu 1 308 -4 207 0 0 0 chr11 17599052 17599075 -133184478 + (A)n Simple_repeat Simple_repeat 1 23 0 1842 145 43 0 chr11 17599158 17599440 -133184113 + AluJo SINE Alu 3 296 -16 2345 95 0 0 chr11 17599522 17599817 -133183736 + AluSg SINE Alu 1 295 -15 1039 211 0 0 chr11 17599831 17600006 -133183547 - FAM SINE Alu 0 175 1 1059 255 52 30 chr11 17600526 17600855 -133182698 + MER102b DNA MER1_type 1 336 -5 2907 126 73 42 chr11 17601076 17601138 -133182415 + MER34 LTR ERV1 1 60 -482 261 0 0 0 chr11 17601138 17601167 -133182386 + (TA)n Simple_repeat Simple_repeat 1 29 0 2208 124 0 3 chr11 17601167 17601473 -133182080 - AluSg SINE Alu -5 305 1 2907 126 73 42 chr11 17601473 17601931 -133181622 + MER34 LTR ERV1 59 538 -4 736 200 0 0 chr11 17602081 17602211 -133181342 + FLAM_C SINE Alu 2 131 -12 2282 120 0 0 chr11 17602509 17602818 -133180735 + AluSg SINE Alu 1 309 -1 1539 190 50 0 chr11 17603110 17603389 -133180164 - AluJb SINE Alu -15 297 5 2332 97 3 3 chr11 17603415 17603723 -133179830 - AluSx SINE Alu -4 308 1 2392 107 0 0 chr11 17604141 17604450 -133179103 - AluSc SINE Alu 0 309 1 2244 117 0 0 chr11 17604473 17604773 -133178780 - AluSx SINE Alu -12 300 1 1439 155 0 106 chr11 17604895 17605244 -133178309 - L1ME1 LINE L1 -6 6160 5849 310 141 22 133 chr11 17605257 17605392 -133178161 - L1MD3 LINE L1 0 7995 7876 1394 86 0 0 chr11 17605499 17605673 -133177880 - AluSg/x SINE Alu -18 292 119 2825 162 73 18 chr11 17605685 17605774 -133177779 - L1MB4 LINE L1 -127 6053 5970 1807 92 146 0 chr11 17605774 17606034 -133177519 - AluSc SINE Alu -11 298 1 2825 162 73 18 chr11 17606034 17606547 -133177006 - L1MB4 LINE L1 -210 5970 5373 2209 125 0 0 chr11 17606560 17606857 -133176696 - AluSx SINE Alu -13 299 3 183 42 0 0 chr11 17606870 17606894 -133176659 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 741 255 0 0 chr11 17606896 17607045 -133176508 - FAM SINE Alu -31 154 6 294 266 153 24 chr11 17607162 17607286 -133176267 - MIR SINE MIR -44 218 79 2271 101 0 3 chr11 17607286 17607583 -133175970 + AluSx SINE Alu 1 296 -16 1518 123 18 0 chr11 17608376 17608603 -133174950 + AluJb SINE Alu 1 231 -81 455 151 0 0 chr11 17608603 17608676 -133174877 - AluS SINE Alu -236 74 2 2348 50 3 34 chr11 17608816 17609114 -133174439 + AluY SINE Alu 2 290 -21 446 349 79 14 chr11 17609218 17609433 -133174120 + L2 LINE L2 2542 2770 -544 21 36 0 0 chr11 17609466 17609494 -133174059 + AT_rich Low_complexity Low_complexity 1 28 0 2342 99 0 0 chr11 17609625 17609929 -133173624 - AluY SINE Alu -1 310 7 1831 142 0 72 chr11 17609937 17610255 -133173298 - AluSx SINE Alu -17 295 1 2302 92 3 0 chr11 17610265 17610560 -133172993 - AluSg SINE Alu -14 296 1 477 213 14 78 chr11 17611147 17611236 -133172317 + FLAM_A SINE Alu 1 79 -223 2188 123 3 0 chr11 17611236 17611536 -133172017 + AluSg SINE Alu 1 301 -9 477 213 14 78 chr11 17611536 17611587 -133171966 + FLAM_A SINE Alu 79 132 -170 196 274 20 0 chr11 17611589 17611640 -133171913 - L2 LINE L2 -82 3190 3139 2461 77 3 0 chr11 17611983 17612281 -133171272 + AluSp SINE Alu 1 299 -14 1866 112 18 35 chr11 17612281 17612566 -133170987 + AluSg SINE Alu 1 281 -29 2367 108 0 0 chr11 17612789 17613096 -133170457 - AluSx SINE Alu -3 309 3 2377 95 0 7 chr11 17613380 17613684 -133169869 - AluSg SINE Alu -8 302 1 334 295 33 33 chr11 17613738 17613860 -133169693 + MIR SINE MIR 65 186 -76 354 256 172 0 chr11 17613926 17614056 -133169497 - MIR SINE MIR -45 163 13 2046 114 6 25 chr11 17614318 17614633 -133168920 + AluSx SINE Alu 1 309 -3 916 212 72 13 chr11 17614698 17614934 -133168619 + MIR SINE MIR 3 252 -10 1827 96 0 0 chr11 17615596 17615826 -133167727 + AluSg/x SINE Alu 81 310 0 265 266 114 0 chr11 17615954 17616033 -133167520 + MIR SINE MIR 33 120 -88 3419 35 0 0 chr11 17616191 17616593 -133166960 - L1PA4 LINE L1 -2 6153 5752 342 62 0 21 chr11 17616593 17616630 -133166923 + L1PA4 LINE L1 5705 5742 -413 2053 128 10 13 chr11 17617294 17617607 -133165946 - AluSx SINE Alu 0 312 1 1166 145 0 11 chr11 17617940 17618119 -133165434 - FRAM SINE Alu -1 175 1 592 258 0 15 chr11 17618475 17618607 -133164946 + FRAM SINE Alu 1 130 -46 670 147 0 53 chr11 17618610 17618800 -133164753 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 356 172 224 82 chr11 17618854 17618916 -133164637 + MER5A DNA MER1_type 9 61 -128 2264 114 0 0 chr11 17618916 17619214 -133164339 + AluSx SINE Alu 1 298 -14 356 172 224 82 chr11 17619214 17619285 -133164268 + MER5A DNA MER1_type 61 161 -28 2088 132 9 107 chr11 17619298 17619470 -133164083 - MLT1B LTR MaLR 0 390 203 2082 146 0 3 chr11 17619470 17619778 -133163775 - AluJb SINE Alu 0 312 6 2088 132 9 107 chr11 17619778 17620037 -133163516 - MLT1B LTR MaLR -187 203 1 2090 133 7 0 chr11 17620493 17620801 -133162752 - AluSx SINE Alu -2 310 1 562 269 94 0 chr11 17620836 17620996 -133162557 - MIR SINE MIR -84 178 4 201 239 0 0 chr11 17621113 17621159 -133162394 + (CAT)n Simple_repeat Simple_repeat 3 48 0 2235 109 0 0 chr11 17621540 17621864 -133161689 + AluSx SINE Alu 1 324 0 2003 125 17 3 chr11 17622048 17622344 -133161209 - AluSx SINE Alu -12 300 1 689 180 96 71 chr11 17622362 17622568 -133160985 + L1MC5 LINE L1 7695 7909 -52 2219 111 0 7 chr11 17622568 17622874 -133160679 - AluY SINE Alu -7 304 1 689 180 96 71 chr11 17622874 17622906 -133160647 + L1MC5 LINE L1 7909 7939 -22 1102 199 89 35 chr11 17622986 17623268 -133160285 + MER63B DNA MER1_type 4 300 -136 1896 166 0 0 chr11 17623269 17623564 -133159989 - AluJb SINE Alu -17 295 1 1782 151 0 46 chr11 17623578 17623903 -133159650 - AluJo SINE Alu -2 310 1 616 231 113 95 chr11 17624502 17624599 -133158954 + L1ME4a LINE L1 5578 5672 -449 2315 111 0 10 chr11 17624599 17624906 -133158647 + AluSx SINE Alu 1 304 -8 1808 105 84 11 chr11 17624911 17625196 -133158357 + AluSg SINE Alu 1 306 -4 616 231 113 95 chr11 17625196 17625409 -133158144 + L1ME4a LINE L1 5675 5883 -238 1744 189 0 14 chr11 17625409 17625706 -133157847 + AluJo SINE Alu 1 293 -19 1961 117 71 0 chr11 17625709 17625992 -133157561 + AluSx SINE Alu 1 303 -9 616 231 113 95 chr11 17625992 17626030 -133157523 + L1ME4a LINE L1 5884 5920 -201 213 39 0 0 chr11 17626030 17626056 -133157497 + (CA)n Simple_repeat Simple_repeat 2 27 0 616 231 113 95 chr11 17626056 17626201 -133157352 + L1ME4a LINE L1 5920 6092 -29 782 239 163 45 chr11 17626432 17626627 -133156926 + HAL1 LINE L1 1819 1990 -517 2342 112 0 3 chr11 17626627 17626941 -133156612 + AluSq SINE Alu 1 313 0 782 239 163 45 chr11 17626941 17627193 -133156360 + HAL1 LINE L1 1990 2319 -188 428 123 0 0 chr11 17627197 17627254 -133156299 + AluS SINE Alu 2 58 -260 1247 173 0 0 chr11 17627254 17627451 -133156102 + AluSg/x SINE Alu 102 298 -12 2076 133 0 0 chr11 17627453 17627739 -133155814 + AluSx SINE Alu 1 286 -26 496 230 73 54 chr11 17627750 17627954 -133155599 + HAL1 LINE L1 2300 2507 0 4983 124 12 20 chr11 17627958 17628710 -133154843 + L1MB3 LINE L1 5427 6172 -11 2276 103 7 3 chr11 17628711 17629011 -133154542 - AluSx SINE Alu -11 301 1 210 164 18 36 chr11 17629262 17629317 -133154236 + T-rich Low_complexity Low_complexity 2 55 0 1689 176 7 3 chr11 17629384 17629679 -133153874 + AluJb SINE Alu 1 296 -16 1273 169 20 24 chr11 17629696 17629950 -133153603 + AluJo SINE Alu 29 281 -31 2302 98 3 7 chr11 17630093 17630398 -133153155 - AluSx SINE Alu -8 304 1 235 273 36 0 chr11 17631392 17631447 -133152106 + L2 LINE L2 3200 3256 -16 363 280 76 0 chr11 17631537 17631655 -133151898 + L2 LINE L2 3185 3311 -2 2153 107 3 3 chr11 17631717 17632017 -133151536 + AluSx SINE Alu 1 300 -12 311 196 0 0 chr11 17632027 17632073 -133151480 + Alu SINE Alu 2 47 -252 545 161 0 0 chr11 17632073 17632160 -133151393 + AluJ/FRAM SINE Alu 226 312 0 1222 426 3 0 chr11 17632280 17632583 -133150970 - AluSg SINE Alu -6 304 1 2459 74 0 3 chr11 17632695 17632994 -133150559 + AluSp SINE Alu 2 299 -14 711 305 154 33 chr11 17633011 17633166 -133150387 - L2 LINE L2 0 3313 3178 297 0 0 0 chr11 17633166 17633199 -133150354 + (CA)n Simple_repeat Simple_repeat 2 34 0 711 305 154 33 chr11 17633199 17633545 -133150008 - L2 LINE L2 -135 3178 2875 2548 78 0 0 chr11 17633545 17633851 -133149702 - AluSg SINE Alu -3 307 2 711 305 154 33 chr11 17633851 17634179 -133149374 - L2 LINE L2 -438 2875 2386 631 312 78 53 chr11 17634179 17634615 -133148938 - LTR16A LTR ERVL -3 447 1 2222 86 4 4 chr11 17634669 17634949 -133148604 + AluSx SINE Alu 1 280 -32 262 268 106 56 chr11 17635032 17635174 -133148379 - L2 LINE L2 -996 2318 2170 494 266 9 60 chr11 17635207 17635370 -133148183 + MER20B DNA MER1_type 43 201 -18 851 279 83 56 chr11 17635396 17635654 -133147899 - L2 LINE L2 -1157 2157 1907 1255 223 13 66 chr11 17635654 17635972 -133147581 + AluJo SINE Alu 2 302 0 851 279 83 56 chr11 17635972 17635996 -133147557 - L2 LINE L2 -1407 1907 1885 2298 92 0 0 chr11 17635996 17636289 -133147264 + AluSg1 SINE Alu 1 293 -16 851 279 83 56 chr11 17636289 17636450 -133147103 - L2 LINE L2 -1429 1885 1701 326 274 154 34 chr11 17636585 17636819 -133146734 - L2 LINE L2 -1611 1703 1442 274 283 129 92 chr11 17636824 17637064 -133146489 + MLT1L LTR MaLR 3 251 -364 1472 114 10 0 chr11 17637243 17637444 -133146109 - AluSq SINE Alu -110 203 1 1017 174 23 55 chr11 17637453 17637672 -133145881 - AluJo SINE Alu -6 306 95 847 189 7 34 chr11 17637674 17637822 -133145731 - AluJo SINE Alu -167 145 2 2367 71 3 3 chr11 17637998 17638292 -133145261 - AluY SINE Alu -6 305 12 226 283 0 17 chr11 17638295 17638355 -133145198 + MER5A DNA MER1_type 128 186 -3 671 170 123 137 chr11 17638455 17638667 -133144886 - MER58A DNA MER1_type -15 209 1 198 0 0 0 chr11 17638684 17638706 -133144847 + (CAA)n Simple_repeat Simple_repeat 2 23 0 2024 115 54 0 chr11 17638792 17639071 -133144482 - AluSg SINE Alu -16 294 1 279 0 0 0 chr11 17639532 17639563 -133143990 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2250 110 0 16 chr11 17639575 17639893 -133143660 - AluSq SINE Alu 0 313 1 234 202 202 12 chr11 17639897 17639981 -133143572 - MIR SINE MIR -46 216 117 797 275 47 17 chr11 17639995 17640231 -133143322 - MIR SINE MIR -11 251 9 2145 124 3 7 chr11 17640461 17640783 -133142770 - AluSx SINE Alu 0 321 1 2404 92 0 13 chr11 17641100 17641415 -133142138 - AluSx SINE Alu -1 311 1 4984 95 6 6 chr11 17641435 17642100 -133141453 - L1PB2 LINE L1 -3 6148 5481 2129 128 7 0 chr11 17642100 17642405 -133141148 - AluSx SINE Alu -5 307 1 1272 142 7 55 chr11 17642411 17642481 -133141072 - L1PB2 LINE L1 -1328 4818 4746 2521 71 0 0 chr11 17642481 17642778 -133140775 - AluSq SINE Alu -15 298 2 1272 142 7 55 chr11 17642778 17642981 -133140572 - L1PB2 LINE L1 -1400 4746 4558 2342 254 78 19 chr11 17643000 17643694 -133139859 - L1PBa LINE L1 -6002 861 127 911 144 8 0 chr11 17643737 17643862 -133139691 + FLAM_C SINE Alu 1 126 -7 997 154 0 35 chr11 17643986 17644130 -133139423 - 7SLRNA srpRNA srpRNA -23 297 158 2869 164 29 35 chr11 17644130 17644399 -133139154 + MER66B LTR ERV1 1 267 -219 2097 152 3 0 chr11 17644399 17644709 -133138844 + AluSx SINE Alu 1 311 -1 2869 164 29 35 chr11 17644709 17644928 -133138625 + MER66B LTR ERV1 267 486 0 997 154 0 35 chr11 17644928 17644952 -133138601 - 7SLRNA srpRNA srpRNA -162 158 135 284 130 0 0 chr11 17644953 17645007 -133138546 - AluSp/q SINE Alu -1 302 249 1692 174 24 10 chr11 17645096 17645390 -133138163 + AluJb SINE Alu 1 298 -14 253 157 0 78 chr11 17645393 17645444 -133138109 + MIR SINE MIR 31 77 -131 452 281 148 10 chr11 17645450 17645646 -133137907 - MIR SINE MIR -3 259 37 917 173 59 170 chr11 17645713 17646054 -133137499 - AluSx SINE Alu -9 303 1 226 227 144 41 chr11 17646055 17646152 -133137401 - MIR SINE MIR -40 222 116 345 135 0 14 chr11 17646201 17646269 -133137284 + MIR3 SINE MIR 96 161 -47 201 147 0 0 chr11 17647613 17647647 -133135906 + (GA)n Simple_repeat Simple_repeat 1 34 0 2358 92 0 3 chr11 17648295 17648599 -133134954 - AluSx SINE Alu -7 305 3 2307 100 3 0 chr11 17649035 17649334 -133134219 + AluSq SINE Alu 1 300 -13 191 268 175 21 chr11 17649459 17649556 -133133997 + MIR3 SINE MIR 49 160 -48 753 171 353 0 chr11 17649558 17649745 -133133808 - Tigger7 DNA MER2_type 0 2487 2235 371 172 0 0 chr11 17649740 17649798 -133133755 - Tigger7 DNA MER2_type -281 58 1 * 2085 129 0 23 chr11 17649904 17650214 -133133339 - AluJo SINE Alu -9 303 1 1842 176 0 3 chr11 17650879 17651186 -133132367 + AluJb SINE Alu 1 306 -6 1788 159 43 10 chr11 17651239 17651541 -133132012 - AluJb SINE Alu 0 312 1 390 282 101 20 chr11 17651630 17651779 -133131774 - MIR SINE MIR -7 255 95 336 64 0 0 chr11 17652332 17652379 -133131174 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 2083 142 0 7 chr11 17652380 17652682 -133130871 - AluSx SINE Alu -12 300 1 29 0 0 0 chr11 17652874 17652903 -133130650 + AT_rich Low_complexity Low_complexity 1 29 0 352 219 112 4 chr11 17652935 17653057 -133130496 + MIR SINE MIR 20 164 -58 590 254 76 68 chr11 17653140 17653557 -133129996 - MLT1J LTR MaLR -36 475 3 192 217 0 22 chr11 17653832 17653878 -133129675 - MIR SINE MIR 0 262 218 1981 125 38 0 chr11 17654152 17654439 -133129114 - AluSx SINE Alu -14 298 1 362 314 74 41 chr11 17654992 17655113 -133128440 + L2 LINE L2 3136 3260 -12 216 0 0 0 chr11 17655141 17655165 -133128388 + (CATA)n Simple_repeat Simple_repeat 2 25 0 2533 47 0 50 chr11 17655268 17655415 -133128138 + AluY SINE Alu 1 125 -186 2298 83 0 17 chr11 17655415 17655717 -133127836 + AluSc SINE Alu 1 297 -12 2533 47 0 50 chr11 17655717 17655889 -133127664 + AluY SINE Alu 125 304 -7 297 0 0 0 chr11 17656057 17656090 -133127463 + (CA)n Simple_repeat Simple_repeat 2 34 0 1839 156 0 10 chr11 17656163 17656458 -133127095 - AluJb SINE Alu -19 293 2 1081 189 9 32 chr11 17657250 17657467 -133126086 + AluJb SINE Alu 84 295 -17 2187 135 0 3 chr11 17657512 17657815 -133125738 + AluSx SINE Alu 1 302 -10 2155 124 7 0 chr11 17657840 17658139 -133125414 + AluSx SINE Alu 1 301 -11 908 248 105 6 chr11 17658151 17658465 -133125088 + HsTC2 DNA Tc2 1536 1880 -18 830 189 0 0 chr11 17658482 17658614 -133124939 - FRAM SINE Alu -44 132 1 2159 118 6 19 chr11 17658649 17658986 -133124567 - AluSx SINE Alu 0 333 1 729 0 0 0 chr11 17659012 17659093 -133124460 + (CA)n Simple_repeat Simple_repeat 2 82 0 2151 124 3 3 chr11 17659101 17659399 -133124154 - AluSx SINE Alu -14 298 1 3879 231 120 24 chr11 17659418 17660567 -133122986 - HsTC2 DNA Tc2 -569 1329 71 894 181 0 0 chr11 17660568 17660701 -133122852 + FLAM_C SINE Alu 1 133 0 384 303 128 0 chr11 17660731 17660919 -133122634 + L1M4 LINE L1 2399 2610 -3536 1517 179 3 20 chr11 17661050 17661346 -133122207 - L1MB7 LINE L1 -19 6165 5875 2403 100 3 0 chr11 17661406 17661717 -133121836 + AluSx SINE Alu 1 312 0 322 326 10 3 chr11 17662323 17662430 -133121123 - MIR SINE MIR -67 141 36 1146 180 11 16 chr11 17662592 17662781 -133120772 - MER5A DNA MER1_type 0 189 2 643 276 89 22 chr11 17662792 17663017 -133120536 + MIR SINE MIR 23 262 0 2389 97 0 0 chr11 17663129 17663429 -133120124 + AluSx SINE Alu 1 300 -12 3744 166 25 5 chr11 17663547 17664217 -133119336 + L1MB7 LINE L1 5485 6168 -16 474 275 105 53 chr11 17664377 17664548 -133119005 - MER5A DNA MER1_type -1 188 9 321 102 85 0 chr11 17664575 17664634 -133118919 + L1MB8 LINE L1 6115 6178 0 198 0 0 0 chr11 17664835 17664857 -133118696 + (A)n Simple_repeat Simple_repeat 1 22 0 2116 99 3 3 chr11 17664921 17665227 -133118326 + AluSp SINE Alu 1 306 0 184 243 0 19 chr11 17665625 17665728 -133117825 + (AAATG)n Simple_repeat Simple_repeat 5 105 0 800 195 0 0 chr11 17666414 17666537 -133117016 - FLAM_A SINE Alu -10 123 1 235 341 102 0 chr11 17666539 17666627 -133116926 - L2 LINE L2 -15 3298 3202 203 353 108 30 chr11 17666810 17667042 -133116511 - L2 LINE L2 -340 2974 2725 2390 94 0 0 chr11 17667959 17668257 -133115296 + AluSg SINE Alu 3 300 -10 677 184 80 0 chr11 17668262 17668387 -133115166 + AluJo SINE Alu 2 136 -176 23 0 0 0 chr11 17668387 17668410 -133115143 + AT_rich Low_complexity Low_complexity 1 23 0 1753 181 0 20 chr11 17668438 17668742 -133114811 + AluJo SINE Alu 1 298 -14 2132 145 0 0 chr11 17668843 17669153 -133114400 - AluSx SINE Alu -2 310 1 221 330 0 75 chr11 17669246 17669352 -133114201 + L2 LINE L2 1858 1955 -1359 547 214 137 0 chr11 17669384 17669515 -133114038 - MER5A DNA MER1_type -40 149 1 1344 126 0 0 chr11 17669776 17669951 -133113602 + AluJo SINE Alu 1 175 -137 22 35 0 0 chr11 17670080 17670109 -133113444 + AT_rich Low_complexity Low_complexity 1 29 0 1696 178 34 10 chr11 17670367 17670665 -133112888 - AluJo SINE Alu -7 305 1 1314 160 0 73 chr11 17671024 17671211 -133112342 - AluJo SINE Alu -1 311 149 2586 50 3 0 chr11 17671211 17671510 -133112043 - AluY SINE Alu -11 300 1 1314 160 0 73 chr11 17671510 17671597 -133111956 - AluJo SINE Alu -163 149 57 236 266 38 13 chr11 17671675 17671754 -133111799 + L1M4 LINE L1 3546 3626 -2520 277 318 18 0 chr11 17671801 17671911 -133111642 + L1M4 LINE L1 3776 3887 -2259 2325 106 3 0 chr11 17672076 17672379 -133111174 + AluSx SINE Alu 2 305 -7 675 286 45 118 chr11 17672384 17672669 -133110884 + L1M4 LINE L1 3885 4189 -1957 2009 126 3 7 chr11 17672669 17672962 -133110591 - AluSx SINE Alu -17 295 4 675 286 45 118 chr11 17672962 17673513 -133110040 + L1M4 LINE L1 4189 4779 -1367 2290 121 0 0 chr11 17673513 17673818 -133109735 + AluSx SINE Alu 1 305 -7 675 286 45 118 chr11 17673818 17674080 -133109473 + L1M4 LINE L1 4779 4881 -1265 1721 176 3 19 chr11 17674080 17674393 -133109160 - AluJo SINE Alu 0 312 5 675 286 45 118 chr11 17674393 17674559 -133108994 + L1M4 LINE L1 4881 5058 -1088 329 217 0 0 chr11 17674613 17674673 -133108880 - L1MC4 LINE L1 -1061 6981 6922 497 264 64 8 chr11 17674735 17674860 -133108693 - MER5A DNA MER1_type -1 188 57 2237 103 20 3 chr11 17675106 17675408 -133108145 + AluSx SINE Alu 1 307 -5 887 143 0 15 chr11 17675542 17675675 -133107878 - FLAM_C SINE Alu -2 131 1 732 157 0 50 chr11 17675809 17675930 -133107623 - FLAM_C SINE Alu -17 116 2 1873 242 121 25 chr11 17675930 17676547 -133107006 - L1MC4 LINE L1 -351 5815 5319 1530 263 24 13 chr11 17676607 17677064 -133106489 - L1MC4 LINE L1 -1127 6915 6454 1920 157 0 23 chr11 17677503 17677802 -133105751 + AluJb SINE Alu 1 292 -20 895 201 211 4 chr11 17678310 17678589 -133104964 + MER46C DNA MER2_type 1 337 -1 2066 107 10 32 chr11 17678827 17679135 -133104418 + AluSq SINE Alu 2 302 -11 1075 151 9 65 chr11 17680702 17680877 -133102676 - AluJo SINE Alu -8 304 121 2193 90 3 40 chr11 17680877 17681177 -133102376 - AluSx SINE Alu -14 298 10 2257 103 0 13 chr11 17681180 17681482 -133102071 - AluSx SINE Alu -14 298 1 1075 151 9 65 chr11 17681482 17681534 -133102019 - AluJo SINE Alu -193 119 86 301 148 19 0 chr11 17681535 17681589 -133101964 - AluJo SINE Alu -162 140 86 2023 140 3 0 chr11 17681719 17682004 -133101549 + AluSx SINE Alu 1 286 -26 1778 288 172 21 chr11 17682115 17683073 -133100480 + L2 LINE L2 1927 3029 -284 2315 89 0 7 chr11 17684419 17684740 -133098813 - AluSg1 SINE Alu 0 309 1 596 294 43 48 chr11 17684770 17685168 -133098385 - L1ME4a LINE L1 -207 5914 5519 25 31 0 0 chr11 17685252 17685284 -133098269 + AT_rich Low_complexity Low_complexity 1 32 0 446 259 18 9 chr11 17685305 17685417 -133098136 + MER81 DNA DNA 2 114 0 364 177 175 3 chr11 17685571 17685688 -133097865 - L1MC4 LINE L1 -5 8037 7901 188 111 28 0 chr11 17685747 17685783 -133097770 + (TATATG)n Simple_repeat Simple_repeat 3 39 0 807 245 131 0 chr11 17685793 17686075 -133097478 - L1MC4 LINE L1 -124 7918 7600 699 184 86 6 chr11 17686111 17686274 -133097279 - L1MC4a LINE L1 -424 7384 7209 669 143 103 24 chr11 17686307 17686433 -133097120 - FLAM_C SINE Alu -5 138 3 1719 144 0 97 chr11 17686445 17686785 -133096768 - AluSx SINE Alu -3 309 3 253 292 45 39 chr11 17686879 17687057 -133096496 - L1ME LINE L1 -348 5773 5595 916 206 30 0 chr11 17687062 17687261 -133096292 + L1MC4 LINE L1 6870 7074 -968 790 159 48 0 chr11 17687366 17687492 -133096061 + FLAM_A SINE Alu 1 132 -1 6683 161 34 71 chr11 17687538 17688190 -133095363 - L1MA2 LINE L1 -10 6294 5619 3075 93 4 33 chr11 17688190 17688674 -133094879 - L1PA13 LINE L1 -4 6159 5690 6683 161 34 71 chr11 17688674 17688859 -133094694 - L1MA2 LINE L1 -685 5619 5429 2028 113 50 0 chr11 17688859 17689141 -133094412 + AluSx SINE Alu 1 296 -16 6683 161 34 71 chr11 17689141 17690609 -133092944 - L1MA2 LINE L1 -875 5429 5108 199 319 128 31 chr11 17690898 17691218 -133092335 - L3 LINE CR1 -77 1500 1150 524 316 52 5 chr11 17691693 17691905 -133091648 + MIR SINE MIR 13 234 -28 412 17 17 17 chr11 17691921 17691979 -133091574 + (CA)n Simple_repeat Simple_repeat 2 59 0 1074 145 12 6 chr11 17692039 17692205 -133091348 - AluJo/FRAM SINE Alu -12 300 134 2154 111 3 7 chr11 17692205 17692503 -133091050 - AluSx SINE Alu -12 300 4 411 302 26 81 chr11 17692504 17693054 -133090499 + L1M4 LINE L1 4131 4709 -1437 2300 121 0 0 chr11 17693054 17693359 -133090194 + AluSx SINE Alu 1 305 -7 411 302 26 81 chr11 17693359 17693621 -133089932 + L1M4 LINE L1 4709 4886 -1260 1753 176 3 19 chr11 17693621 17693934 -133089619 - AluJo SINE Alu 0 312 5 411 302 26 81 chr11 17693934 17694076 -133089477 + L1M4 LINE L1 4886 5034 -1112 305 217 0 0 chr11 17694154 17694214 -133089339 - L1MC4 LINE L1 -1061 6981 6922 509 264 64 8 chr11 17694276 17694401 -133089152 - MER5A DNA MER1_type -1 188 57 2239 103 20 3 chr11 17694647 17694949 -133088604 + AluSx SINE Alu 1 307 -5 832 143 0 15 chr11 17695083 17695216 -133088337 - FLAM_C SINE Alu -2 131 1 690 157 0 50 chr11 17695350 17695471 -133088082 - FLAM_C SINE Alu -17 116 2 1653 233 119 25 chr11 17695471 17696034 -133087519 - L1MC4 LINE L1 -1819 5989 5374 1342 267 22 11 chr11 17696148 17696605 -133086948 - L1MC4 LINE L1 -1127 6915 6454 1920 157 0 23 chr11 17697044 17697343 -133086210 + AluJb SINE Alu 1 292 -20 895 201 211 4 chr11 17697851 17698130 -133085423 + MER46C DNA MER2_type 1 337 -1 2066 107 7 32 chr11 17698367 17698675 -133084878 + AluSx SINE Alu 2 301 -11 1090 147 9 65 chr11 17700242 17700417 -133083136 - AluJo SINE Alu -8 304 121 2193 90 3 40 chr11 17700417 17700717 -133082836 - AluSx SINE Alu -14 298 10 2257 103 0 13 chr11 17700720 17701022 -133082531 - AluSx SINE Alu -14 298 1 1090 147 9 65 chr11 17701022 17701074 -133082479 - AluJo SINE Alu -193 119 86 301 148 19 0 chr11 17701075 17701129 -133082424 - AluJo SINE Alu -162 140 86 2067 140 0 0 chr11 17701259 17701545 -133082008 + AluSx SINE Alu 1 286 -26 1778 288 172 21 chr11 17701656 17702614 -133080939 + L2 LINE L2 1927 3029 -284 2315 89 0 7 chr11 17703958 17704279 -133079274 - AluSg1 SINE Alu 0 309 1 596 294 43 48 chr11 17704309 17704707 -133078846 - L1ME4a LINE L1 -207 5914 5519 25 31 0 0 chr11 17704791 17704823 -133078730 + AT_rich Low_complexity Low_complexity 1 32 0 446 259 18 9 chr11 17704844 17704956 -133078597 + MER81 DNA DNA 2 114 0 364 177 175 3 chr11 17705110 17705227 -133078326 - L1MC4 LINE L1 -5 9456 9320 188 111 28 0 chr11 17705286 17705322 -133078231 + (TATATG)n Simple_repeat Simple_repeat 3 39 0 793 248 131 0 chr11 17705332 17705614 -133077939 - L1MC4 LINE L1 -124 9337 9019 699 184 86 6 chr11 17705650 17705813 -133077740 - L1MC4a LINE L1 -424 8803 8628 669 143 103 24 chr11 17705846 17705972 -133077581 - FLAM_C SINE Alu -5 138 3 1748 141 0 97 chr11 17705984 17706324 -133077229 - AluSx SINE Alu -3 309 3 253 292 45 39 chr11 17706418 17706596 -133076957 - L1ME LINE L1 -348 5773 5595 916 206 30 0 chr11 17706601 17706800 -133076753 + L1MC4 LINE L1 6870 7074 -968 790 159 48 0 chr11 17706905 17707031 -133076522 + FLAM_A SINE Alu 1 132 -1 17600 162 51 31 chr11 17707077 17707729 -133075824 - L1MA2 LINE L1 -10 7713 7075 3069 93 4 35 chr11 17707729 17708214 -133075339 - L1PA13 LINE L1 -4 6159 5690 17600 162 51 31 chr11 17708214 17708399 -133075154 - L1MA2 LINE L1 -648 7075 6895 2028 113 50 0 chr11 17708399 17708681 -133074872 + AluSx SINE Alu 1 296 -16 17600 162 51 31 chr11 17708681 17712435 -133071118 - L1MA2 LINE L1 -828 6895 3217 2098 146 0 10 chr11 17712435 17712743 -133070810 - AluSx SINE Alu -7 305 1 17600 162 51 31 chr11 17712743 17712777 -133070776 - L1MA2 LINE L1 -4506 3217 3185 2142 105 3 7 chr11 17712777 17713108 -133070445 - AluSx SINE Alu 0 330 1 17600 162 51 31 chr11 17713108 17713991 -133069562 - L1MA2 LINE L1 -4538 3185 2321 2243 121 3 6 chr11 17713991 17714305 -133069248 - AluSp SINE Alu 0 313 1 17600 162 51 31 chr11 17714305 17714317 -133069236 - L1MA2 LINE L1 -5402 2321 2311 2478 81 0 3 chr11 17714317 17714625 -133068928 - AluSp SINE Alu -6 307 1 17600 162 51 31 chr11 17714625 17715084 -133068469 - L1MA2 LINE L1 -5412 2311 1863 1814 180 0 0 chr11 17715084 17715367 -133068186 - AluSx SINE Alu -29 283 1 17600 162 51 31 chr11 17715367 17717830 -133065723 - L1MA2 LINE L1 -5860 1863 66 365 241 11 40 chr11 17717880 17718054 -133065499 - L1MC4a LINE L1 -1758 6050 5882 249 33 0 0 chr11 17718471 17718501 -133065052 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 1679 177 0 0 chr11 17718509 17718775 -133064778 - AluJo SINE Alu -46 266 1 785 231 201 51 chr11 17720018 17720447 -133063106 - MLT1J LTR MaLR -2 509 17 1792 162 18 14 chr11 17720730 17721014 -133062539 - AluJo SINE Alu -23 289 5 473 296 131 37 chr11 17722146 17722552 -133061001 - LTR67 LTR ERVL 0 557 114 2258 125 0 0 chr11 17722610 17722907 -133060646 + AluSx SINE Alu 1 297 -15 2257 105 0 0 chr11 17723510 17723805 -133059748 - AluSg SINE Alu -15 295 1 382 127 0 0 chr11 17724011 17724074 -133059479 - MER46A DNA MER2_type -1 235 173 1274 121 0 6 chr11 17724074 17724248 -133059305 - AluSx SINE Alu -139 173 1 563 202 67 0 chr11 17724289 17724408 -133059145 - MER46A DNA MER2_type -109 127 1 2699 7 0 0 chr11 17724496 17724789 -133058764 + AluY SINE Alu 19 311 0 24 32 0 0 chr11 17724905 17724936 -133058617 + AT_rich Low_complexity Low_complexity 1 31 0 1887 181 0 0 chr11 17724946 17725244 -133058309 - AluJo SINE Alu -14 298 1 1953 120 40 7 chr11 17725636 17725938 -133057615 - AluSq SINE Alu 0 311 1 21 0 0 0 chr11 17726000 17726021 -133057532 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr11 17726267 17726288 -133057265 + AT_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chr11 17726528 17726562 -133056991 + AT_rich Low_complexity Low_complexity 1 34 0 2325 116 0 0 chr11 17726656 17726967 -133056586 - AluSx SINE Alu -1 311 1 2102 139 0 0 chr11 17726982 17727291 -133056262 - AluSx SINE Alu -3 309 1 26697 26 11 0 chr11 17727359 17731297 -133052256 - L1PA4 LINE L1 -5 6150 2171 2207 82 0 0 chr11 17733430 17733723 -133049830 + AluSg SINE Alu 1 293 -17 21 82 0 0 chr11 17734010 17734059 -133049494 + AT_rich Low_complexity Low_complexity 1 49 0 428 226 174 0 chr11 17734130 17734245 -133049308 - L3 LINE CR1 -3 1574 1440 494 173 8 12 chr11 17734262 17734377 -133049176 - MER5B DNA MER1_type 0 178 1 1006 201 62 25 chr11 17734652 17734896 -133048657 - L1MC4a LINE L1 -8 7800 7548 1795 123 147 72 chr11 17734948 17735322 -133048231 - MER4A LTR ERV1 0 664 263 421 153 94 12 chr11 17735337 17735422 -133048131 - MER4A LTR ERV1 -572 92 1 1475 204 67 15 chr11 17735436 17735842 -133047711 - L1MC4 LINE L1 -108 7934 7508 744 176 157 19 chr11 17735854 17736064 -133047489 + MER5C DNA MER1_type 9 247 -77 186 43 0 0 chr11 17736093 17736116 -133047437 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 514 165 136 0 chr11 17736135 17736238 -133047315 - FLAM_C SINE Alu -25 118 2 1825 159 3 19 chr11 17736325 17736640 -133046913 - AluJb SINE Alu -2 310 1 198 301 157 0 chr11 17736654 17736737 -133046816 + L2 LINE L2 3208 3303 -10 2284 92 0 3 chr11 17736776 17737080 -133046473 - AluSq SINE Alu -9 304 2 369 284 142 64 chr11 17737080 17737261 -133046292 - L3 LINE CR1 -193 1384 1170 1724 253 62 12 chr11 17737261 17737748 -133045805 - MLT1J LTR MaLR 0 511 1 369 284 142 64 chr11 17737748 17737862 -133045691 - L3 LINE CR1 -407 1170 1066 2329 81 0 25 chr11 17738087 17738407 -133045146 + AluSx SINE Alu 1 312 0 242 347 110 8 chr11 17738964 17739108 -133044445 - MIR SINE MIR -58 150 14 2340 62 16 0 chr11 17740170 17740476 -133043077 - AluY SINE Alu 0 311 1 237 261 54 11 chr11 17740872 17740964 -133042589 + L1MC/D LINE L1 5379 5474 -2311 23 33 0 0 chr11 17741544 17741574 -133041979 + GC_rich Low_complexity Low_complexity 1 30 0 270 81 0 0 chr11 17742538 17742575 -133040978 + (T)n Simple_repeat Simple_repeat 1 37 0 512 196 36 102 chr11 17743083 17743119 -133040434 + L1M4 LINE L1 4338 4375 -1771 1824 153 10 13 chr11 17743119 17743432 -133040121 + AluJo SINE Alu 1 312 0 512 196 36 102 chr11 17743432 17743577 -133039976 + L1M4 LINE L1 4375 4528 -1618 1396 170 43 117 chr11 17743577 17743789 -133039764 - MLT1A1 LTR MaLR 0 365 139 1516 192 0 11 chr11 17743789 17744102 -133039451 - AluJo SINE Alu 0 310 1 1396 170 43 117 chr11 17744102 17744127 -133039426 - MLT1A1 LTR MaLR -226 139 114 2256 103 0 3 chr11 17744127 17744438 -133039115 - AluSg SINE Alu 0 310 1 1396 170 43 117 chr11 17744438 17744592 -133038961 - MLT1A1 LTR MaLR -251 114 1 512 196 36 102 chr11 17744592 17744634 -133038919 + L1M4 LINE L1 4528 4547 -1599 2394 122 37 19 chr11 17745136 17745514 -133038039 - MLT1B LTR MaLR 0 390 6 1500 173 18 0 chr11 17745725 17746002 -133037551 - AluJo SINE Alu -30 282 1 5438 127 123 136 chr11 17746024 17746592 -133036961 - L1MC3 LINE L1 -8 8572 7998 290 235 10 39 chr11 17746592 17746694 -133036859 - MLT1F1 LTR MaLR -443 124 26 5438 127 123 136 chr11 17746694 17747501 -133036052 - L1MC3 LINE L1 -582 7998 7116 2181 110 7 13 chr11 17747501 17747811 -133035742 - AluSx SINE Alu -4 308 1 718 129 19 8 chr11 17747813 17747949 -133035604 - L1MC3 LINE L1 -885 6269 6130 1378 150 53 9 chr11 17747951 17748177 -133035376 - AluJb SINE Alu -48 264 29 4501 190 114 116 chr11 17748178 17748754 -133034799 - L1MC3 LINE L1 -779 6162 5587 1512 181 75 3 chr11 17748754 17749036 -133034517 - AluJb SINE Alu 0 302 1 4501 190 114 116 chr11 17749036 17749289 -133034264 - L1MC3 LINE L1 -1354 5587 5335 2207 98 10 0 chr11 17749289 17749584 -133033969 - AluSx SINE Alu -14 298 1 4501 190 114 116 chr11 17749584 17749817 -133033736 - L1MC3 LINE L1 -1606 5335 5103 816 148 0 8 chr11 17749817 17749945 -133033608 - FLAM_C SINE Alu -16 127 1 4501 190 114 116 chr11 17749945 17750632 -133032921 - L1MC3 LINE L1 -1838 5103 4287 1189 78 11 6 chr11 17750678 17750684 -133032869 + (TTTC)n Simple_repeat Simple_repeat 1 186 0 1189 78 11 6 chr11 17750684 17750863 -133032690 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 4033 214 78 59 chr11 17750918 17750946 -133032607 - L1MC3 LINE L1 -4501 2440 2414 1511 152 14 25 chr11 17750946 17751223 -133032330 - AluJb SINE Alu -38 274 1 4033 214 78 59 chr11 17751223 17751578 -133031975 - L1MC3 LINE L1 -4527 2414 2067 1729 176 0 19 chr11 17751578 17751896 -133031657 - AluJb SINE Alu 0 312 1 4033 214 78 59 chr11 17751896 17752191 -133031362 - L1MC3 LINE L1 -4874 2067 1779 1688 158 3 17 chr11 17752191 17752488 -133031065 - AluSx SINE Alu -14 298 6 4033 214 78 59 chr11 17752488 17752548 -133031005 - L1MC3 LINE L1 -5162 1779 1722 2197 101 3 0 chr11 17752548 17752845 -133030708 - AluSp SINE Alu -15 298 1 4033 214 78 59 chr11 17752845 17754068 -133029485 - L1MC3 LINE L1 -5219 1722 58 1172 250 89 64 chr11 17754075 17754547 -133029006 - MLT1J LTR MaLR -27 484 1 2289 84 3 0 chr11 17755821 17756117 -133027436 - AluSp SINE Alu -16 297 1 988 164 1 33 chr11 17756976 17757163 -133026390 + LTR25-int LTR ERV1 103 304 -6692 3505 109 87 17 chr11 17757841 17758373 -133025180 + MER61E LTR ERV1 1 569 0 30273 191 22 38 chr11 17758373 17764380 -133019173 + HUERS-P3 LTR ERV1 1 5912 -3007 14668 103 7 12 chr11 17764381 17765196 -133018357 + HUERS-P3 LTR ERV1 6938 7756 -1163 1825 143 0 35 chr11 17765196 17765510 -133018043 + AluSg SINE Alu 1 303 -7 14668 103 7 12 chr11 17765510 17766687 -133016866 + HUERS-P3 LTR ERV1 7756 8919 0 3872 121 12 23 chr11 17766687 17767258 -133016295 + MER61E LTR ERV1 1 565 -4 604 265 179 45 chr11 17767353 17767644 -133015909 + MLT1H LTR MaLR 10 339 -210 23 68 0 0 chr11 17767725 17767769 -133015784 + AT_rich Low_complexity Low_complexity 1 44 0 230 183 33 17 chr11 17767769 17767829 -133015724 + MLT1H LTR MaLR 489 549 0 614 271 73 75 chr11 17767863 17768136 -133015417 + LTR16B LTR ERVL 1 274 -190 2911 169 40 45 chr11 17768136 17768490 -133015063 + MER6A DNA MER2_type 5 356 -509 1778 161 0 13 chr11 17768490 17768789 -133014764 - AluJo SINE Alu -17 295 1 2911 169 40 45 chr11 17768789 17769038 -133014515 + MER6A DNA MER2_type 356 605 0 614 271 73 75 chr11 17769038 17769229 -133014324 + LTR16B LTR ERVL 274 464 0 454 265 33 40 chr11 17771154 17771241 -133012312 + MIR SINE MIR 20 107 -155 1944 160 86 3 chr11 17771241 17771578 -133011975 + MLT1A1 LTR MaLR 1 365 0 454 265 33 40 chr11 17771578 17771641 -133011912 + MIR SINE MIR 107 169 -93 301 287 158 68 chr11 17772551 17772962 -133010591 - L2 LINE L2 0 3272 2825 1182 176 94 0 chr11 17773299 17773532 -133010021 - MIR SINE MIR -1 261 7 2426 65 0 0 chr11 17776299 17776605 -133006948 + AluSg SINE Alu 1 306 -4 347 211 21 49 chr11 17777095 17777237 -133006316 + C-rich Low_complexity Low_complexity 6 143 0 199 100 0 40 chr11 17777409 17777459 -133006094 + (TCCCC)n Simple_repeat Simple_repeat 2 49 0 270 0 0 0 chr11 17777839 17777869 -133005684 + (A)n Simple_repeat Simple_repeat 1 30 0 265 326 82 37 chr11 17778479 17778724 -133004829 + L3 LINE CR1 1134 1389 -188 193 321 76 15 chr11 17779165 17779296 -133004257 + L2 LINE L2 2717 2855 -459 821 251 71 10 chr11 17779882 17780271 -133003282 + MLT1K LTR MaLR 143 575 -13 1931 163 48 13 chr11 17780379 17780754 -133002799 + MLT1B LTR MaLR 1 388 -2 199 174 0 29 chr11 17782018 17782087 -133001466 + (TG)n Simple_repeat Simple_repeat 2 68 0 310 215 165 0 chr11 17782976 17783055 -133000498 + MIR3 SINE MIR 73 164 -44 218 226 35 43 chr11 17784374 17784489 -132999064 + (CAGAGA)n Simple_repeat Simple_repeat 6 119 0 759 321 165 11 chr11 17786644 17786986 -132996567 + L2 LINE L2 2353 2641 -672 2287 94 0 22 chr11 17786986 17787304 -132996249 + AluSx SINE Alu 1 311 -1 759 321 165 11 chr11 17787304 17787779 -132995774 + L2 LINE L2 2641 3313 0 193 224 20 0 chr11 17788534 17788583 -132994970 + MIR SINE MIR 113 162 -100 721 294 22 1 chr11 17788669 17788891 -132994662 + MIR SINE MIR 22 249 -13 241 345 54 34 chr11 17788884 17789032 -132994521 + L3 LINE CR1 743 893 -684 * 243 340 20 0 chr11 17789224 17789324 -132994229 + L3 LINE CR1 1181 1282 -295 543 323 105 33 chr11 17789870 17790146 -132993407 + L2 LINE L2 2977 3272 0 426 304 29 41 chr11 17790160 17790331 -132993222 + MIR SINE MIR 80 248 -14 495 282 87 15 chr11 17790778 17790973 -132992580 + MIR SINE MIR 17 225 -37 904 237 88 0 chr11 17791655 17791883 -132991670 + MER112 DNA MER1_type 13 260 0 345 292 17 8 chr11 17792182 17792302 -132991251 + L1ME LINE L1 5547 5667 -454 1929 142 10 10 chr11 17792755 17793064 -132990489 - AluSq SINE Alu -4 309 1 200 363 38 0 chr11 17794369 17794449 -132989104 + MIR SINE MIR 158 240 -22 365 281 79 0 chr11 17794484 17794598 -132988955 - MIR SINE MIR -56 206 84 205 290 29 0 chr11 17795196 17795265 -132988288 - MIR SINE MIR -113 149 79 2186 206 45 54 chr11 17795616 17796173 -132987380 + MLT1K LTR MaLR 32 583 -5 1986 121 3 13 chr11 17796950 17797256 -132986297 - AluJb SINE Alu -9 303 1 860 189 25 61 chr11 17797868 17798064 -132985489 - AluJo SINE Alu 0 312 124 379 221 26 0 chr11 17798766 17798843 -132984710 + MIR SINE MIR 74 152 -56 323 288 127 65 chr11 17799034 17799357 -132984196 + L2 LINE L2 2921 3263 -9 214 344 82 82 chr11 17799590 17799869 -132983684 + L2 LINE L2 2962 3240 -32 770 211 76 22 chr11 17799872 17799888 -132983665 + MER117 DNA MER1_type 2 16 -181 2437 56 3 0 chr11 17799888 17800191 -132983362 - AluY SINE Alu -7 304 1 770 211 76 22 chr11 17800191 17800359 -132983194 + MER117 DNA MER1_type 16 196 -1 713 322 51 4 chr11 17801933 17802169 -132981384 + MIR SINE MIR 8 254 -8 688 204 21 0 chr11 17804510 17804652 -132978901 - L1MB7 LINE L1 -82 6102 5958 551 197 87 8 chr11 17804653 17804780 -132978773 - MER106A DNA MER1_type -70 166 30 190 191 24 0 chr11 17805235 17805277 -132978276 - MIR SINE MIR -65 143 101 426 273 119 4 chr11 17805298 17805525 -132978028 - MER112 DNA MER1_type -7 253 1 670 241 116 37 chr11 17805698 17805747 -132977806 - MIR SINE MIR 0 262 218 180 0 0 0 chr11 17805747 17805767 -132977786 + (TC)n Simple_repeat Simple_repeat 1 20 0 1846 110 0 31 chr11 17805767 17806057 -132977496 - AluJo SINE Alu -31 281 1 670 241 116 37 chr11 17806057 17806247 -132977306 - MIR SINE MIR -43 219 3 351 241 186 22 chr11 17806936 17807102 -132976451 - MIR SINE MIR -40 222 32 398 282 30 23 chr11 17807828 17807959 -132975594 + MIR SINE MIR 53 184 -78 424 308 29 23 chr11 17808234 17808406 -132975147 - MIR SINE MIR -55 207 35 225 289 105 0 chr11 17809206 17809282 -132974271 - L2 LINE L2 -73 3199 3116 221 330 22 33 chr11 17809486 17809577 -132973976 - L2 LINE L2 -56 3216 3127 222 231 294 50 chr11 17809637 17809797 -132973756 - MIR SINE MIR -56 206 8 238 326 130 59 chr11 17810765 17811035 -132972518 + L2 LINE L2 2804 3092 -180 2225 99 3 3 chr11 17811076 17811379 -132972174 + AluSg SINE Alu 1 303 -7 183 320 93 0 chr11 17811390 17811465 -132972088 + L2 LINE L2 3187 3268 -4 661 247 107 0 chr11 17811879 17812057 -132971496 + MIR SINE MIR 47 243 -19 2100 63 18 14 chr11 17812059 17812344 -132971209 + L1PA8 LINE L1 5887 6172 0 541 306 31 0 chr11 17812842 17813002 -132970551 + MIR SINE MIR 95 259 -3 6208 41 0 0 chr11 17813689 17814417 -132969136 - L1PA7 LINE L1 -4 6150 5423 573 298 96 9 chr11 17814686 17814904 -132968649 + MIR SINE MIR 25 261 -1 251 261 90 15 chr11 17816877 17817011 -132966542 + (TTAGGG)n Simple_repeat Simple_repeat 3 146 0 324 360 9 0 chr11 17817020 17817131 -132966422 - MIR SINE MIR -3 259 148 396 310 86 55 chr11 17818367 17818622 -132964931 + L3 LINE CR1 1180 1442 -135 641 266 131 8 chr11 17819687 17819939 -132963614 + L1ME4a LINE L1 5834 6116 -5 375 173 67 0 chr11 17820894 17820969 -132962584 + MIR SINE MIR 56 135 -127 189 340 0 0 chr11 17821679 17821726 -132961827 - L2 LINE L2 -87 3185 3139 390 282 40 8 chr11 17822308 17822432 -132961121 + L1ME LINE L1 5538 5665 -456 24 32 0 0 chr11 17822672 17822703 -132960850 + AT_rich Low_complexity Low_complexity 1 31 0 327 85 0 0 chr11 17822971 17823018 -132960535 + (TG)n Simple_repeat Simple_repeat 2 48 0 2495 67 0 6 chr11 17824806 17825120 -132958433 + AluSq SINE Alu 1 312 -1 2022 124 3 10 chr11 17825816 17826122 -132957431 + AluSx SINE Alu 1 304 -8 234 169 200 31 chr11 17826230 17826295 -132957258 + L2 LINE L2 3197 3272 0 211 293 136 50 chr11 17826360 17826500 -132957053 + L2 LINE L2 3100 3251 -21 272 401 24 0 chr11 17826810 17826977 -132956576 + MIR SINE MIR 64 234 -28 201 337 62 45 chr11 17826964 17827142 -132956411 + L2 LINE L2 3082 3262 -10 * 348 236 55 27 chr11 17829269 17829379 -132954174 + MIR SINE MIR 31 143 -65 254 273 36 36 chr11 17829393 17829503 -132954050 - L1MEd LINE L1 -5068 1051 942 953 219 83 22 chr11 17829520 17829748 -132953805 - ERVL LTR ERVL -3488 2276 2035 2371 105 0 0 chr11 17829799 17830095 -132953458 + AluSg SINE Alu 1 296 -14 519 307 27 0 chr11 17830389 17830539 -132953014 + L2 LINE L2 3160 3313 0 302 259 35 24 chr11 17831016 17831101 -132952452 - MIR SINE MIR -62 146 61 660 248 50 74 chr11 17832721 17832979 -132950574 + MIR SINE MIR 3 254 -8 215 254 0 0 chr11 17833067 17833122 -132950431 + MIR SINE MIR 68 122 -86 822 128 149 32 chr11 17833295 17833483 -132950070 + L1MB7 LINE L1 5964 6173 -11 2302 122 0 0 chr11 17833962 17834265 -132949288 - AluSx SINE Alu -9 303 1 753 161 0 0 chr11 17834459 17834577 -132948976 - FLAM_A SINE Alu -15 118 1 353 273 71 10 chr11 17835014 17835113 -132948440 - MIR SINE MIR -57 205 101 1112 168 21 133 chr11 17835424 17835763 -132947790 - AluJo SINE Alu 0 302 2 300 254 217 25 chr11 17835836 17836076 -132947477 - L1ME4a LINE L1 -23 6098 5813 753 182 0 0 chr11 17836116 17836248 -132947305 - FLAM_C SINE Alu 0 133 2 22 0 0 0 chr11 17836904 17836926 -132946627 + AT_rich Low_complexity Low_complexity 1 22 0 2095 135 7 3 chr11 17836928 17837225 -132946328 - AluSx SINE Alu -14 298 1 1017 72 22 28 chr11 17838233 17838413 -132945140 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 2257 60 0 11 chr11 17838416 17838685 -132944868 - AluY SINE Alu -34 277 12 2369 108 0 0 chr11 17838685 17838982 -132944571 - AluSg SINE Alu -9 301 5 211 264 22 44 chr11 17839173 17839264 -132944289 + L3 LINE CR1 1382 1470 -107 392 175 0 0 chr11 17839434 17839497 -132944056 + MER91B DNA MER1_type 1 63 -127 847 291 124 23 chr11 17839704 17840147 -132943406 + MLT1J LTR MaLR 15 502 -9 2207 108 13 0 chr11 17840353 17840658 -132942895 - MER1B DNA MER1_type 0 339 31 350 227 0 0 chr11 17840776 17840842 -132942711 + MER117 DNA MER1_type 79 144 -53 474 239 18 0 chr11 17842660 17842773 -132940780 - MIR SINE MIR -78 184 70 2195 134 3 3 chr11 17843655 17843962 -132939591 + AluSx SINE Alu 1 307 -5 249 311 57 9 chr11 17844308 17844414 -132939139 - MIR SINE MIR -69 139 29 576 259 175 26 chr11 17844635 17844863 -132938690 + MIR SINE MIR 1 262 0 358 289 207 8 chr11 17844860 17845106 -132938447 - L2 LINE L2 0 3272 2978 * 180 111 0 0 chr11 17845261 17845288 -132938265 + (CA)n Simple_repeat Simple_repeat 2 28 0 195 309 134 0 chr11 17845855 17845952 -132937601 + L3b LINE CR1 1339 1448 -135 295 320 20 0 chr11 17846772 17846872 -132936681 + L2 LINE L2 2982 3083 -189 606 228 24 24 chr11 17847006 17847173 -132936380 + MIR SINE MIR 2 168 -94 223 314 67 0 chr11 17847216 17847321 -132936232 + MIR SINE MIR 151 262 0 260 234 31 0 chr11 17847353 17847417 -132936136 + L2 LINE L2 3203 3268 -4 294 225 234 0 chr11 17848819 17848930 -132934623 - MIR3 SINE MIR -2 206 70 327 263 94 32 chr11 17849043 17849202 -132934351 + MIR SINE MIR 20 186 -57 364 202 29 58 chr11 17849300 17849404 -132934149 + MIR3 SINE MIR 100 200 -8 245 349 16 8 chr11 17849398 17849527 -132934026 + MIR3 SINE MIR 50 179 -29 * 383 253 142 31 chr11 17850165 17850333 -132933220 + MIR SINE MIR 30 212 -50 1055 269 84 17 chr11 17850412 17850828 -132932725 + L1ME4a LINE L1 5491 5934 -187 680 285 54 29 chr11 17851887 17852129 -132931424 - MIR SINE MIR -13 249 2 540 285 30 12 chr11 17852135 17852300 -132931253 - MIR3 SINE MIR -11 197 30 672 302 87 12 chr11 17852373 17852615 -132930938 + MIR SINE MIR 2 261 -1 403 314 16 16 chr11 17853325 17853504 -132930049 - MIR SINE MIR -44 218 41 327 325 17 54 chr11 17853645 17853885 -132929668 + L2 LINE L2 2458 2688 -626 2689 142 31 32 chr11 17853887 17854118 -132929435 + L1MB3 LINE L1 5664 5894 -289 2358 106 0 0 chr11 17854118 17854419 -132929134 + AluSg SINE Alu 1 301 -9 2689 142 31 32 chr11 17854419 17854617 -132928936 + L1MB3 LINE L1 5894 6093 -90 1783 124 0 141 chr11 17854617 17854965 -132928588 - AluJb SINE Alu -13 299 1 2689 142 31 32 chr11 17854965 17855038 -132928515 + L1MB3 LINE L1 6093 6165 -18 396 0 0 0 chr11 17855042 17855086 -132928467 + (CA)n Simple_repeat Simple_repeat 1 44 0 1635 152 12 8 chr11 17855140 17855396 -132928157 + AluSx SINE Alu 5 261 -51 370 303 92 5 chr11 17855424 17855609 -132927944 + L2 LINE L2 2856 3056 -257 789 240 42 18 chr11 17856506 17856723 -132926830 + MIR SINE MIR 41 262 0 334 293 57 21 chr11 17856727 17856867 -132926686 + MIR SINE MIR 104 248 -14 215 263 158 32 chr11 17856948 17857043 -132926510 + L2 LINE L2 2101 2207 -1107 408 125 0 0 chr11 17857046 17857110 -132926443 + (TTCC)n Simple_repeat Simple_repeat 2 65 0 2001 131 0 3 chr11 17857111 17857393 -132926160 - AluSx SINE Alu -31 281 1 304 313 121 4 chr11 17857393 17857649 -132925904 + L2 LINE L2 2192 2477 -837 831 269 182 12 chr11 17857654 17858066 -132925487 + L2 LINE L2 2832 3313 0 730 220 60 6 chr11 17858587 17858755 -132924798 - MIR SINE MIR -1 261 85 273 313 65 65 chr11 17859173 17859390 -132924163 - L2 LINE L2 -93 3179 2963 445 291 265 9 chr11 17859529 17859869 -132923684 + MLT1L LTR MaLR 120 546 -69 366 267 9 9 chr11 17859991 17860107 -132923446 - Charlie2a DNA MER1_type -4 2858 2743 * 964 214 71 7 chr11 17860093 17860374 -132923179 - Charlie2a DNA MER1_type -1837 1025 727 252 286 33 0 chr11 17860383 17860474 -132923079 - Charlie2a DNA MER1_type -2453 409 316 418 254 9 0 chr11 17860967 17861077 -132922476 - Charlie2 DNA MER1_type 0 2862 2752 276 228 41 73 chr11 17861087 17861210 -132922343 - MIR3 SINE MIR -85 123 5 1891 155 3 24 chr11 17863228 17863524 -132920029 - AluJo SINE Alu -22 290 1 263 265 43 8 chr11 17864832 17864949 -132918604 + (CCCCG)n Simple_repeat Simple_repeat 2 122 0 307 288 0 0 chr11 17866527 17866600 -132916953 - MIR SINE MIR -58 150 78 391 294 56 8 chr11 17866763 17866889 -132916664 + MIR SINE MIR 50 181 -81 227 244 39 51 chr11 17867113 17867191 -132916362 + MIR SINE MIR 38 114 -94 607 91 0 0 chr11 17867817 17867938 -132915615 + AluJb SINE Alu 194 314 0 627 170 0 71 chr11 17868559 17868700 -132914853 - FLAM_C SINE Alu -1 132 2 186 283 0 0 chr11 17869452 17869498 -132914055 - L2 LINE L2 -5 3308 3263 * 427 282 155 17 chr11 17869485 17869666 -132913887 - MIR SINE MIR -44 218 13 378 222 125 76 chr11 17870317 17870461 -132913092 + MIR SINE MIR 33 183 -79 23 33 0 0 chr11 17870550 17870580 -132912973 + AT_rich Low_complexity Low_complexity 1 30 0 279 328 129 5 chr11 17870580 17870766 -132912787 - MIR SINE MIR -13 249 41 5843 94 24 14 chr11 17870925 17871082 -132912471 - L1MA3 LINE L1 -2 6303 6149 2192 111 3 7 chr11 17871082 17871379 -132912174 - AluSx SINE Alu -16 296 1 5843 94 24 14 chr11 17871379 17872113 -132911440 - L1MA3 LINE L1 -156 6149 5403 1846 182 43 3 chr11 17872184 17872535 -132911018 + MLT1A1 LTR MaLR 1 365 0 204 228 18 0 chr11 17872681 17872738 -132910815 + GA-rich Low_complexity Low_complexity 1 58 0 371 266 0 18 chr11 17873260 17873369 -132910184 - MIR SINE MIR -133 129 23 738 164 99 18 chr11 17873371 17873542 -132910011 + MER5A DNA MER1_type 4 188 -1 206 163 0 70 chr11 17873952 17873995 -132909558 - L2 LINE L2 -2 3270 3231 183 285 36 79 chr11 17874044 17874209 -132909344 + L2 LINE L2 2943 3100 -172 2377 213 80 47 chr11 17874550 17874758 -132908795 - LTR68 LTR ERV1 0 740 540 1538 124 16 4 chr11 17874758 17875016 -132908537 + L1MB3 LINE L1 5916 6176 -7 2377 213 80 47 chr11 17875016 17875155 -132908398 - LTR68 LTR ERV1 -200 540 407 5566 68 12 17 chr11 17875155 17875788 -132907765 - L1MA2 LINE L1 0 6304 5674 2280 103 0 17 chr11 17875788 17876089 -132907464 - AluSc SINE Alu -9 300 5 5566 68 12 17 chr11 17876089 17876273 -132907280 - L1MA2 LINE L1 -630 5674 5491 2377 213 80 47 chr11 17876273 17876641 -132906912 - LTR68 LTR ERV1 -333 407 1 419 237 92 8 chr11 17876910 17877041 -132906512 - MIR SINE MIR -35 227 86 1070 271 124 6 chr11 17877356 17877695 -132905858 + MLT1K LTR MaLR 33 411 -177 2159 153 65 5 chr11 17877701 17878087 -132905466 + MLT2D LTR ERVL 6 414 0 284 250 281 0 chr11 17878087 17878214 -132905339 + MLT1K LTR MaLR 415 577 -11 311 327 107 5 chr11 17878283 17878488 -132905065 - L2 LINE L2 -243 3029 2804 745 273 88 9 chr11 17878560 17878787 -132904766 + MIR SINE MIR 2 246 -16 200 250 80 45 chr11 17879316 17879404 -132904149 + MIR SINE MIR 63 153 -55 810 250 55 51 chr11 17880206 17880462 -132903091 + MIR SINE MIR 5 261 -1 316 283 0 43 chr11 17883985 17884123 -132899430 + (CAGAGA)n Simple_repeat Simple_repeat 6 137 0 * 320 296 6 45 chr11 17884049 17884225 -132899328 + GA-rich Low_complexity Low_complexity 4 172 0 194 273 0 0 chr11 17884345 17884400 -132899153 + L3b LINE CR1 1344 1398 -185 353 287 100 40 chr11 17885054 17885204 -132898349 + MER5A DNA MER1_type 10 168 -21 649 318 195 20 chr11 17885371 17885609 -132897944 - L3 LINE CR1 -202 1375 1180 486 271 45 15 chr11 17885609 17885742 -132897811 - MER91C DNA MER1_type -3 137 1 649 318 195 20 chr11 17885742 17886010 -132897543 - L3 LINE CR1 -397 1180 780 814 265 192 21 chr11 17886597 17886982 -132896571 + L2 LINE L2 2862 3312 -1 439 274 46 20 chr11 17887006 17887159 -132896394 + MER103 DNA DNA 1 157 -9 186 280 215 0 chr11 17887673 17887766 -132895787 - MIR SINE MIR -62 146 34 917 223 5 5 chr11 17888298 17888482 -132895071 + MIR SINE MIR 39 222 -40 222 279 112 45 chr11 17888567 17888746 -132894807 + L2 LINE L2 2927 3117 -155 468 284 55 11 chr11 17891402 17891585 -132891968 - MIR3 SINE MIR -2 206 16 691 265 39 0 chr11 17891663 17891844 -132891709 + MIR SINE MIR 2 189 -73 362 329 121 33 chr11 17893347 17893587 -132889966 + MIR SINE MIR 2 262 0 545 282 162 28 chr11 17894457 17894970 -132888583 + L2 LINE L2 2692 3272 0 599 300 57 53 chr11 17895537 17895764 -132887789 - MIR SINE MIR 0 262 35 486 296 15 8 chr11 17898078 17898210 -132885343 + MER94 DNA DNA 1 133 -1 181 352 88 11 chr11 17898736 17898827 -132884726 + L3 LINE CR1 1477 1574 -3 477 240 48 20 chr11 17900287 17900433 -132883120 + MIR SINE MIR 71 220 -42 209 125 0 62 chr11 17900438 17900486 -132883067 + (TAAA)n Simple_repeat Simple_repeat 4 48 0 413 267 10 0 chr11 17901043 17901161 -132882392 - MIR SINE MIR -62 146 32 241 268 12 37 chr11 17901550 17901632 -132881921 + MARNA DNA Mariner 156 235 -351 207 100 0 0 chr11 17901817 17901847 -132881706 + (GAAA)n Simple_repeat Simple_repeat 2 31 0 195 286 71 41 chr11 17901966 17902064 -132881489 + L2 LINE L2 3088 3188 -84 1958 142 0 0 chr11 17902210 17902505 -132881048 - AluSx SINE Alu -3 309 15 273 98 0 0 chr11 17903044 17903085 -132880468 + (TG)n Simple_repeat Simple_repeat 2 42 0 2123 104 3 7 chr11 17906738 17907037 -132876516 + AluSp SINE Alu 1 298 -15 1817 121 21 14 chr11 17909850 17910132 -132873421 - AluSx SINE Alu -28 284 1 601 278 98 10 chr11 17910295 17910500 -132873053 + MIR SINE MIR 38 260 -2 512 237 125 0 chr11 17911835 17911987 -132871566 - MIR SINE MIR -3 259 89 665 318 99 0 chr11 17911988 17912199 -132871354 + MIR SINE MIR 13 244 -18 961 139 42 18 chr11 17912841 17913007 -132870546 - FRAM SINE Alu -7 169 1 681 254 79 0 chr11 17913080 17913245 -132870308 - MER117 DNA MER1_type -16 181 4 682 251 96 0 chr11 17913421 17913620 -132869933 - MIR SINE MIR 0 262 45 235 88 0 0 chr11 17913801 17913835 -132869718 + MIR SINE MIR 112 145 -63 1820 171 0 0 chr11 17913919 17914212 -132869341 + AluJb SINE Alu 1 293 -19 345 207 0 101 chr11 17915125 17915323 -132868230 + CT-rich Low_complexity Low_complexity 2 179 0 301 286 151 24 chr11 17915664 17915790 -132867763 - MIR3 SINE MIR -52 156 15 836 219 113 21 chr11 17916083 17916321 -132867232 + MIR SINE MIR 3 262 0 317 244 70 0 chr11 17916538 17916624 -132866929 - MIR SINE MIR -61 147 56 500 243 40 46 chr11 17917003 17917155 -132866398 - MIR SINE MIR -65 197 47 264 231 0 51 chr11 17918481 17918559 -132864994 + MIR3 SINE MIR 9 82 -126 810 257 45 14 chr11 17918702 17918924 -132864629 - MIR SINE MIR -30 232 4 264 342 98 40 chr11 17920150 17920425 -132863128 + L2 LINE L2 2712 2970 -343 1968 145 0 7 chr11 17920425 17920735 -132862818 - AluJb SINE Alu -4 308 1 264 342 98 40 chr11 17920735 17921016 -132862537 + L2 LINE L2 2970 3313 0 411 317 41 7 chr11 17921110 17921255 -132862298 + L2 LINE L2 3123 3272 0 2283 97 3 0 chr11 17922728 17923028 -132860525 + AluSx SINE Alu 1 301 -11 543 291 223 18 chr11 17923248 17923762 -132859791 + L2 LINE L2 2672 3309 -4 563 233 55 7 chr11 17923919 17924065 -132859488 - MIR SINE MIR -103 159 7 184 337 62 45 chr11 17924066 17924244 -132859309 - L3b LINE CR1 -103 1480 1300 471 185 65 0 chr11 17925931 17926039 -132857514 - MIR SINE MIR -41 221 107 352 241 11 0 chr11 17926678 17926765 -132856788 + MIR SINE MIR 163 250 -12 832 263 189 7 chr11 17926765 17927198 -132856355 + LTR33 LTR ERVL 1 512 -9 204 300 0 50 chr11 17927244 17927344 -132856209 + L2 LINE L2 2993 3087 -185 384 141 26 127 chr11 17927507 17927685 -132855868 + MIR SINE MIR 104 257 -5 221 250 0 16 chr11 17927831 17927895 -132855658 + CT-rich Low_complexity Low_complexity 3 65 0 239 120 0 20 chr11 17927906 17927956 -132855597 + (TCTCTG)n Simple_repeat Simple_repeat 6 54 0 2105 138 3 0 chr11 17927956 17928267 -132855286 - AluJo SINE Alu 0 312 1 618 252 0 7 chr11 17928275 17928418 -132855135 - L1MA10 LINE L1 0 6334 6193 1341 257 184 19 chr11 17928487 17929536 -132854017 + L2 LINE L2 2063 3313 0 341 356 53 0 chr11 17929995 17930127 -132853426 - MIR SINE MIR -92 170 32 * 630 237 27 48 chr11 17930126 17930312 -132853241 - MIR SINE MIR -1 261 80 2436 62 0 20 chr11 17932882 17933188 -132850365 - AluY SINE Alu -11 300 1 186 43 0 0 chr11 17933441 17933464 -132850089 + (CAAAA)n Simple_repeat Simple_repeat 4 26 0 235 314 139 0 chr11 17934457 17934543 -132849010 + L2 LINE L2 3162 3259 -13 285 29 0 0 chr11 17934543 17934577 -132848976 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 210 118 0 0 chr11 17934621 17934655 -132848898 + (CCA)n Simple_repeat Simple_repeat 1 34 0 181 325 36 12 chr11 17935065 17935148 -132848405 + MIR3 SINE MIR 107 191 -17 315 0 0 0 chr11 17936554 17936589 -132846964 + (T)n Simple_repeat Simple_repeat 1 35 0 1860 168 7 3 chr11 17936851 17937149 -132846404 - AluJo SINE Alu -13 299 1 1824 192 35 19 chr11 17938155 17938618 -132844935 + Charlie4a DNA MER1_type 39 508 0 294 202 181 11 chr11 17939187 17939281 -132844272 + L2 LINE L2 3166 3275 -38 420 341 80 45 chr11 17941863 17942215 -132841338 - L2 LINE L2 -3 3310 2947 309 298 133 85 chr11 17942286 17942534 -132841019 + L2 LINE L2 3012 3271 -1 449 232 99 20 chr11 17942926 17943077 -132840476 - MER112 DNA MER1_type -21 239 77 252 0 0 0 chr11 17943340 17943368 -132840185 + (TG)n Simple_repeat Simple_repeat 1 28 0 320 197 58 98 chr11 17943623 17943784 -132839769 + MIR SINE MIR 2 160 -48 308 203 68 51 chr11 17945594 17945712 -132837841 + MIR SINE MIR 70 189 -73 448 288 50 0 chr11 17945907 17946046 -132837507 - MIR SINE MIR -41 221 76 321 322 0 0 chr11 17946934 17947024 -132836529 - MIR SINE MIR -82 126 37 979 142 11 0 chr11 17947886 17948062 -132835491 + GA-rich Low_complexity Low_complexity 1 178 0 282 56 0 0 chr11 17950179 17950215 -132833338 + (TA)n Simple_repeat Simple_repeat 2 37 0 840 41 0 0 chr11 17950298 17950395 -132833158 + AluY SINE Alu 210 306 -5 213 94 0 0 chr11 17950915 17950947 -132832606 + (TTCC)n Simple_repeat Simple_repeat 3 34 0 261 360 96 22 chr11 17950950 17951128 -132832425 - L2 LINE L2 -2 3270 3080 203 211 0 0 chr11 17951200 17951238 -132832315 - L2 LINE L2 -219 3053 3016 1626 176 7 55 chr11 17951821 17952128 -132831425 - AluJb SINE Alu -20 292 1 194 289 41 10 chr11 17952178 17952275 -132831278 - L3 LINE CR1 -152 1425 1326 241 321 31 119 chr11 17952284 17952602 -132830951 - L2 LINE L2 -26 3246 2957 314 330 63 19 chr11 17952799 17953005 -132830548 - MIR SINE MIR -1 261 47 3244 142 150 141 chr11 17953076 17953637 -132829916 - L1MC3 LINE L1 0 7785 7230 272 300 82 9 chr11 17953637 17953747 -132829806 - MLT1F1 LTR MaLR -442 125 8 3244 142 150 141 chr11 17953747 17954208 -132829345 - L1MC3 LINE L1 -555 7230 6644 1937 131 9 25 chr11 17954257 17954577 -132828976 + MER2 DNA MER2_type 31 345 0 2653 162 40 4 chr11 17954577 17955107 -132828446 - L1MC3 LINE L1 -1140 6645 6097 324 356 37 0 chr11 17955185 17955320 -132828233 - MIR SINE MIR -102 160 21 774 154 8 0 chr11 17955646 17955776 -132827777 - FLAM_C SINE Alu -2 131 1 328 387 35 25 chr11 17955780 17955979 -132827574 + L2 LINE L2 2835 3035 -237 * 419 279 12 67 chr11 17955970 17956026 -132827527 + MIR SINE MIR 104 162 -100 2411 64 0 0 chr11 17956026 17956339 -132827214 - AluY SINE Alu 0 313 1 419 279 12 67 chr11 17956339 17956446 -132827107 + MIR SINE MIR 162 259 -3 412 273 83 49 chr11 17956559 17956764 -132826789 + L2 LINE L2 3100 3311 -2 237 33 0 0 chr11 17958203 17958233 -132825320 + (CAGG)n Simple_repeat Simple_repeat 3 32 0 408 337 118 0 chr11 17958690 17958859 -132824694 - MER5A DNA MER1_type 0 189 1 213 94 0 0 chr11 17959880 17959912 -132823641 + (TG)n Simple_repeat Simple_repeat 1 32 0 237 327 26 0 chr11 17960010 17960123 -132823430 + (TG)n Simple_repeat Simple_repeat 1 116 0 725 253 92 28 chr11 17960559 17960999 -132822554 + L2 LINE L2 2748 3207 -106 295 280 181 11 chr11 17961460 17961742 -132821811 + L2 LINE L2 2265 2594 -720 402 224 12 0 chr11 17961865 17961950 -132821603 + L2 LINE L2 3186 3271 -1 * 445 273 52 32 chr11 17961938 17962077 -132821476 + MIR3 SINE MIR 10 154 -54 703 268 0 6 chr11 17962077 17962256 -132821297 + MER5B DNA MER1_type 1 178 0 445 273 52 32 chr11 17962256 17962270 -132821283 + MIR3 SINE MIR 154 166 -42 450 218 55 9 chr11 17962674 17962784 -132820769 + MIR SINE MIR 28 142 -120 693 303 75 10 chr11 17963321 17963615 -132819938 - L2 LINE L2 -6 3307 2995 193 255 0 20 chr11 17963729 17963780 -132819773 + MIR SINE MIR 95 144 -64 192 364 0 0 chr11 17964148 17964214 -132819339 + MIR SINE MIR 149 214 -48 479 260 24 0 chr11 17965618 17965741 -132817812 + MIR SINE MIR 5 130 -132 256 305 85 17 chr11 17966163 17966281 -132817272 + MIR SINE MIR 115 240 -22 243 327 10 29 chr11 17966878 17966982 -132816571 + MIR SINE MIR 128 229 -33 327 217 144 72 chr11 17967461 17967641 -132815912 - MIR SINE MIR -42 220 28 352 232 232 0 chr11 17968384 17968483 -132815070 + MIR SINE MIR 22 143 -119 318 291 157 0 chr11 17968867 17969001 -132814552 - MIR SINE MIR -6 256 102 489 320 80 52 chr11 17969001 17969539 -132814014 + HAL1 LINE L1 1 553 -1954 551 256 11 15 chr11 17969733 17969913 -132813640 - L1ME2 LINE L1 0 6170 5997 * 911 243 70 21 chr11 17969908 17970192 -132813361 - L1ME2 LINE L1 -101 6063 5766 6274 230 78 41 chr11 17970203 17971262 -132812291 - L1ME3A LINE L1 -27 6143 5124 1703 174 44 7 chr11 17971262 17971556 -132811997 - AluJo SINE Alu -7 305 1 6274 230 78 41 chr11 17971556 17972663 -132810890 - L1ME3A LINE L1 -1046 5124 3799 1933 173 0 0 chr11 17972663 17972958 -132810595 - AluSx SINE Alu -17 295 1 6274 230 78 41 chr11 17972958 17973710 -132809843 - L1ME3A LINE L1 -2371 3799 3076 215 346 0 22 chr11 17974930 17975066 -132808487 + (TATATG)n Simple_repeat Simple_repeat 3 135 0 275 304 5 38 chr11 17975119 17975362 -132808191 + (TATATG)n Simple_repeat Simple_repeat 1 235 0 7129 266 80 18 chr11 17976708 17979289 -132804264 + L2 LINE L2 564 3310 -3 245 293 138 26 chr11 17979306 17979422 -132804131 + MIR SINE MIR 13 141 -121 686 282 37 33 chr11 17979984 17980225 -132803328 - MIR SINE MIR -3 259 18 203 220 0 20 chr11 17980387 17980437 -132803116 + (TAA)n Simple_repeat Simple_repeat 3 51 0 185 237 17 34 chr11 17980583 17980642 -132802911 + L2 LINE L2 1795 1852 -1462 547 302 180 12 chr11 17980721 17981065 -132802488 - L1MC4a LINE L1 -1913 5895 5494 195 282 19 87 chr11 17981091 17981194 -132802359 - L2 LINE L2 0 3313 3218 204 341 35 0 chr11 17982628 17982713 -132800840 - L2 LINE L2 -180 3092 3005 351 255 43 11 chr11 17982859 17982953 -132800600 + MIR SINE MIR 20 116 -92 625 320 10 0 chr11 17982976 17983170 -132800383 + MER117 DNA MER1_type 2 197 0 2705 197 30 34 chr11 17983518 17984111 -132799442 - MLT1E LTR MaLR 0 593 3 245 342 79 26 chr11 17984532 17984722 -132798831 - L3b LINE CR1 -190 1393 1194 720 264 110 18 chr11 17985220 17985447 -132798106 - MIR SINE MIR -8 254 7 386 325 23 12 chr11 17985443 17985613 -132797940 + MIR SINE MIR 39 212 -50 * 24 0 0 0 chr11 17985794 17985818 -132797735 + AT_rich Low_complexity Low_complexity 1 24 0 527 266 107 17 chr11 17985945 17986122 -132797431 + MIR SINE MIR 31 223 -39 210 279 131 0 chr11 17986233 17986294 -132797259 - MIR SINE MIR -11 251 183 1792 191 53 20 chr11 17986297 17986695 -132796858 + MER96B DNA MER1_type? 7 417 0 376 354 32 6 chr11 17986701 17986859 -132796694 - MIR SINE MIR -93 169 8 258 290 14 0 chr11 17987461 17987530 -132796023 - L3 LINE CR1 -235 1342 1273 207 100 0 0 chr11 17988981 17989011 -132794542 + (CCCA)n Simple_repeat Simple_repeat 2 31 0 566 229 145 6 chr11 17989088 17989267 -132794286 - MER63A DNA MER1_type 0 210 7 342 302 41 60 chr11 17989366 17989634 -132793919 - L2 LINE L2 -173 3099 2837 275 191 0 17 chr11 17990788 17990909 -132792644 + CT-rich Low_complexity Low_complexity 1 118 0 411 300 206 5 chr11 17990909 17991132 -132792421 - L2 LINE L2 -20 3252 2985 227 315 22 11 chr11 17991147 17991239 -132792314 - L2 LINE L2 -512 2802 2710 236 300 88 41 chr11 17991775 17991945 -132791608 - L2 LINE L2 -167 3105 2928 1048 212 60 24 chr11 17992043 17992293 -132791260 - MIR SINE MIR -2 260 2 377 243 47 0 chr11 17992436 17992543 -132791010 - MIR3 SINE MIR -48 160 49 264 276 187 15 chr11 17992604 17992738 -132790815 + MIR SINE MIR 12 168 -94 618 232 8 8 chr11 17992775 17992900 -132790653 + L2 LINE L2 3188 3312 -1 251 295 32 42 chr11 17992893 17992988 -132790565 + MIR SINE MIR 144 237 -25 * 404 264 58 16 chr11 17993577 17993698 -132789855 + L2 LINE L2 3187 3312 -1 478 308 137 4 chr11 17995107 17995334 -132788219 + MIR SINE MIR 1 257 -5 472 300 8 8 chr11 17995614 17995744 -132787809 + MIR SINE MIR 100 229 -33 311 284 165 9 chr11 17997497 17997606 -132785947 - MIR3 SINE MIR -46 162 37 236 318 0 9 chr11 17999787 17999894 -132783659 + (TG)n Simple_repeat Simple_repeat 1 106 0 228 35 0 0 chr11 17999947 17999976 -132783577 + (TG)n Simple_repeat Simple_repeat 2 30 0 301 289 16 25 chr11 18001319 18001440 -132782113 - L1M4 LINE L1 -2954 3192 3073 321 14 0 0 chr11 18001460 18001532 -132782021 + (TTCC)n Simple_repeat Simple_repeat 1 72 0 796 179 125 22 chr11 18002068 18002252 -132781301 - MER69 DNA AcHobo -1023 203 1 4803 244 70 32 chr11 18002574 18003781 -132779772 - L1ME1 LINE L1 -8 6227 5068 2291 83 17 0 chr11 18003781 18004070 -132779483 + AluSp SINE Alu 1 294 -19 4803 244 70 32 chr11 18004070 18004186 -132779367 - L1ME1 LINE L1 -1167 5068 4958 1900 175 10 0 chr11 18004186 18004489 -132779064 - AluJo SINE Alu -6 306 1 4803 244 70 32 chr11 18004489 18006035 -132777518 - L1ME1 LINE L1 -1277 4958 3472 2296 87 37 0 chr11 18006035 18006333 -132777220 - AluY SINE Alu -2 309 1 4803 244 70 32 chr11 18006333 18007129 -132776424 - L1ME1 LINE L1 -2763 3472 2708 1736 168 10 30 chr11 18007129 18007427 -132776126 + AluJb SINE Alu 14 305 -7 4803 244 70 32 chr11 18007427 18008206 -132775347 - L1ME1 LINE L1 -3527 2708 1552 2922 141 6 4 chr11 18008206 18008682 -132774871 - L1MB5 LINE L1 0 6174 5698 4803 244 70 32 chr11 18008682 18008831 -132774722 - L1ME1 LINE L1 -4683 1552 1410 3448 238 71 47 chr11 18008842 18009728 -132773825 - L1ME1 LINE L1 -5130 1266 343 183 42 0 0 chr11 18009728 18009752 -132773801 + (TC)n Simple_repeat Simple_repeat 2 25 0 3448 238 71 47 chr11 18009752 18010069 -132773484 - L1ME1 LINE L1 -6053 343 35 249 320 39 19 chr11 18010168 18010271 -132773282 - MIR3 SINE MIR -22 186 82 12266 144 33 11 chr11 18010364 18011271 -132772282 - L1MA2 LINE L1 0 6304 5419 9718 154 5 7 chr11 18011271 18013724 -132769829 - L1PA13 LINE L1 0 6163 3715 12266 144 33 11 chr11 18013724 18014299 -132769254 - L1MA2 LINE L1 -885 5419 4858 2303 126 0 0 chr11 18014299 18014608 -132768945 - AluSx SINE Alu -3 309 1 12266 144 33 11 chr11 18014608 18016473 -132767080 - L1MA2 LINE L1 -1446 4858 2870 492 297 66 76 chr11 18016668 18016971 -132766582 - L2 LINE L2 -8 3264 2965 301 241 0 0 chr11 18017105 18017159 -132766394 + L2 LINE L2 3211 3264 -8 519 95 0 0 chr11 18017159 18017233 -132766320 + (TGGA)n Simple_repeat Simple_repeat 3 76 0 405 248 25 57 chr11 18017733 18017890 -132765663 - MIR SINE MIR -31 231 80 249 33 0 0 chr11 18018107 18018137 -132765416 + (CA)n Simple_repeat Simple_repeat 2 31 0 409 171 14 0 chr11 18018279 18018349 -132765204 - L2 LINE L2 -50 3263 3193 291 93 0 0 chr11 18018380 18018423 -132765130 + (CACCAT)n Simple_repeat Simple_repeat 1 43 0 180 357 57 51 chr11 18018677 18018834 -132764719 - L2 LINE L2 -5 3267 3110 215 219 68 55 chr11 18018879 18018952 -132764601 - L2 LINE L2 -329 2984 2911 231 224 0 35 chr11 18019040 18019098 -132764455 - MLT1J1 LTR MaLR -52 394 339 * 274 193 9 0 chr11 18019097 18019161 -132764392 - MLT1J2 LTR MaLR -137 367 267 656 265 38 0 chr11 18019170 18019355 -132764198 - MLT1J1 LTR MaLR -249 197 6 321 178 178 85 chr11 18019380 18019498 -132764055 - L1MC4 LINE L1 0 8042 7914 418 224 37 0 chr11 18019560 18019667 -132763886 - L1MC4 LINE L1 -128 7914 7804 348 278 31 10 chr11 18019672 18019769 -132763784 + MIR SINE MIR 95 193 -69 43 35 0 0 chr11 18020493 18020550 -132763003 + AT_rich Low_complexity Low_complexity 1 57 0 694 216 116 30 chr11 18021021 18021183 -132762370 - MER112 DNA MER1_type -8 252 63 404 302 113 0 chr11 18021183 18021342 -132762211 - MER5B DNA MER1_type -1 177 1 694 216 116 30 chr11 18021342 18021411 -132762142 - MER112 DNA MER1_type -197 63 1 1121 232 0 5 chr11 18021421 18021645 -132761908 - MER58A DNA MER1_type -1 223 1 360 273 38 42 chr11 18022573 18022753 -132760800 + MIR SINE MIR 3 181 -63 549 285 74 22 chr11 18024907 18025134 -132758419 + MIR SINE MIR 24 261 -1 295 246 136 53 chr11 18025159 18025423 -132758130 - L1ME4a LINE L1 -3 6118 5833 233 304 32 8 chr11 18025574 18025699 -132757854 - L1MC5 LINE L1 -523 7438 7311 355 308 145 36 chr11 18025731 18025952 -132757601 - L1MC4a LINE L1 -450 7358 7114 663 122 0 9 chr11 18026948 18027214 -132756339 + AluSg1 SINE Alu 1 311 -1 196 268 141 0 chr11 18027744 18027815 -132755738 + MIR SINE MIR 109 189 -73 271 245 0 29 chr11 18027818 18027957 -132755596 + (ATG)n Simple_repeat Simple_repeat 1 135 0 * 802 174 5 18 chr11 18027942 18028169 -132755384 + (ATGGTG)n Simple_repeat Simple_repeat 1 223 0 273 197 0 0 chr11 18028176 18028242 -132755311 + (ATG)n Simple_repeat Simple_repeat 3 68 0 749 262 136 5 chr11 18028245 18028466 -132755087 - MIR SINE MIR -5 257 8 270 294 0 24 chr11 18029533 18029618 -132753935 + L2 LINE L2 3226 3308 -5 * 332 284 40 0 chr11 18029613 18029722 -132753831 - MIR SINE MIR -63 145 45 305 331 0 0 chr11 18030952 18031088 -132752465 + (CA)n Simple_repeat Simple_repeat 2 137 0 186 350 17 0 chr11 18031160 18031220 -132752333 - MIR SINE MIR -113 149 89 341 182 300 9 chr11 18032600 18032710 -132750843 - L2 LINE L2 -14 3299 3158 542 188 23 8 chr11 18032729 18032857 -132750696 - MER69 DNA AcHobo -15 2511 2382 256 296 24 59 chr11 18032968 18033137 -132750416 - L2 LINE L2 -203 3110 2948 741 209 12 0 chr11 18036194 18036357 -132747196 + L1M4 LINE L1 2864 3028 -3118 349 309 169 25 chr11 18037368 18037412 -132746141 + L1MC4a LINE L1 5600 5636 -2172 2547 173 32 10 chr11 18037412 18037904 -132745649 + MLT1D LTR MaLR 1 503 -2 349 309 169 25 chr11 18037904 18038102 -132745451 + L1MC4a LINE L1 5636 5877 -1931 300 20 61 0 chr11 18038166 18038215 -132745338 + (CA)n Simple_repeat Simple_repeat 2 53 0 756 234 111 16 chr11 18039251 18039495 -132744058 - MLT1J2 LTR MaLR -139 311 45 375 263 91 42 chr11 18040474 18040610 -132742943 - MIR SINE MIR -46 162 22 1666 121 103 18 chr11 18040778 18041051 -132742502 + AluSx SINE Alu 3 298 -14 22 0 0 30 chr11 18041153 18041171 -132742382 + AT_rich Low_complexity Low_complexity 1 19 -13 2128 128 0 17 chr11 18041171 18041469 -132742084 - AluSx SINE Alu -19 293 1 22 0 0 30 chr11 18041469 18041483 -132742070 + AT_rich Low_complexity Low_complexity 19 32 0 811 174 8 0 chr11 18041483 18041615 -132741938 - FLAM_C SINE Alu -5 138 6 787 229 56 104 chr11 18041754 18042129 -132741424 + LTR67 LTR ERVL 198 554 -3 216 193 58 87 chr11 18042224 18042328 -132741225 - MIR SINE MIR -102 106 18 1152 242 59 44 chr11 18042476 18042825 -132740728 - L2 LINE L2 -1731 1583 1226 1729 172 36 10 chr11 18042825 18043127 -132740426 - AluJo SINE Alu -2 310 1 1152 242 59 44 chr11 18043127 18043186 -132740367 - L2 LINE L2 -2088 1226 1169 253 254 0 0 chr11 18043202 18043257 -132740296 - L2 LINE L2 -2569 745 691 370 301 0 45 chr11 18043268 18043340 -132740213 - L1MC4a LINE L1 -1885 5923 5858 2275 118 0 3 chr11 18043340 18043637 -132739916 - AluSp SINE Alu -16 297 2 370 301 0 45 chr11 18043637 18043697 -132739856 - L1MC4a LINE L1 -1950 5858 5797 253 83 0 0 chr11 18044556 18044592 -132738961 + tRNA-His-CAC tRNA tRNA 1 36 -39 2285 102 7 0 chr11 18044736 18045031 -132738522 + AluSx SINE Alu 1 297 -15 859 98 38 15 chr11 18045032 18045164 -132738389 + AluSq/x SINE Alu 1 135 -177 1764 130 63 18 chr11 18045572 18045857 -132737696 + AluSg SINE Alu 1 298 -12 445 209 0 0 chr11 18045957 18046043 -132737510 - MER44D DNA MER2_type -2 607 522 4656 76 11 73 chr11 18046051 18046251 -132737302 - LTR8 LTR ERV1 0 691 480 2190 107 13 7 chr11 18046251 18046560 -132736993 - AluSx SINE Alu 0 312 2 4656 76 11 73 chr11 18046560 18047094 -132736459 - LTR8 LTR ERV1 -211 480 3 4099 113 95 29 chr11 18047100 18047489 -132736064 - Tigger3b DNA MER2_type -1887 1141 779 2166 110 4 0 chr11 18047489 18047798 -132735755 - AluSx SINE Alu 0 310 1 4099 113 95 29 chr11 18047798 18048175 -132735378 - Tigger3b DNA MER2_type -2249 779 315 418 74 0 179 chr11 18048175 18048215 -132735338 + MADE1 DNA Mariner 1 16 -64 2012 122 10 7 chr11 18048215 18048503 -132735050 - AluSq SINE Alu -21 292 4 418 74 0 179 chr11 18048503 18048557 -132734996 + MADE1 DNA Mariner 16 78 -2 4099 113 95 29 chr11 18048557 18048596 -132734957 - Tigger3b DNA MER2_type -2713 315 280 2264 120 3 0 chr11 18048596 18048897 -132734656 + AluSg SINE Alu 3 304 -6 1207 124 0 0 chr11 18048897 18049058 -132734495 + AluSg/x SINE Alu 134 294 -18 836 191 0 8 chr11 18049075 18049199 -132734354 + FRAM SINE Alu 20 144 -168 240 100 0 0 chr11 18049199 18049239 -132734314 + (CA)n Simple_repeat Simple_repeat 1 40 0 320 175 0 0 chr11 18049264 18049321 -132734232 - Tigger3b DNA MER2_type -1131 100 44 475 78 0 0 chr11 18049323 18049387 -132734166 + AluSc SINE Alu 186 249 -60 1298 138 9 23 chr11 18049389 18049606 -132733947 + AluSq SINE Alu 88 301 -12 2060 150 16 25 chr11 18049606 18049972 -132733581 - MER44D DNA MER2_type -187 418 1 1425 178 13 0 chr11 18050083 18050314 -132733239 + AluJb SINE Alu 40 273 -39 236 296 0 28 chr11 18050397 18050468 -132733085 - L2 LINE L2 0 3313 3245 573 318 17 39 chr11 18051223 18051456 -132732097 + MIR SINE MIR 2 229 -33 274 246 102 25 chr11 18051711 18051829 -132731724 + MIR3 SINE MIR 33 159 -49 327 232 69 62 chr11 18052326 18052471 -132731082 + MIR SINE MIR 23 171 -71 522 285 114 19 chr11 18052598 18053057 -132730496 - L2 LINE L2 -251 3062 2555 517 262 14 7 chr11 18053108 18053249 -132730304 - MIR SINE MIR 0 262 121 210 37 0 0 chr11 18053858 18053885 -132729668 + (CA)n Simple_repeat Simple_repeat 2 28 0 291 122 0 0 chr11 18054813 18054862 -132728691 + (CA)n Simple_repeat Simple_repeat 2 50 0 207 0 0 0 chr11 18055126 18055149 -132728404 + (CA)n Simple_repeat Simple_repeat 1 23 0 285 224 32 64 chr11 18055443 18055599 -132727954 + MIR3 SINE MIR 4 154 -54 220 273 15 0 chr11 18056324 18056390 -132727163 + MIR SINE MIR 30 96 -112 294 248 48 0 chr11 18056927 18057032 -132726521 - MIR3 SINE MIR -18 190 81 309 269 28 21 chr11 18057584 18057725 -132725828 + (CA)n Simple_repeat Simple_repeat 1 142 0 377 147 27 0 chr11 18058783 18058858 -132724695 + GA-rich Low_complexity Low_complexity 2 78 0 27 29 0 0 chr11 18059191 18059225 -132724328 + GC_rich Low_complexity Low_complexity 1 34 0 229 246 53 9 chr11 18059532 18059646 -132723907 + (CGGGG)n Simple_repeat Simple_repeat 5 123 0 215 132 26 0 chr11 18059641 18059679 -132723874 + (CCG)n Simple_repeat Simple_repeat 2 40 0 * 22 0 0 0 chr11 18059885 18059907 -132723646 + GC_rich Low_complexity Low_complexity 1 22 0 195 170 0 0 chr11 18060224 18060271 -132723282 + (CA)n Simple_repeat Simple_repeat 2 48 0 202 349 48 16 chr11 18060705 18060831 -132722722 - L2 LINE L2 -1 3271 3142 204 163 0 0 chr11 18061438 18061481 -132722072 + (GCCTG)n Simple_repeat Simple_repeat 3 45 0 411 73 0 0 chr11 18061595 18061650 -132721903 + (CA)n Simple_repeat Simple_repeat 2 56 0 779 259 31 0 chr11 18062819 18063074 -132720479 - L1M4 LINE L1 -1686 4460 4198 191 301 60 12 chr11 18063217 18063300 -132720253 + L3 LINE CR1 1488 1574 -3 316 279 38 89 chr11 18063365 18063521 -132720032 + MLT1L LTR MaLR 8 155 -460 484 226 30 17 chr11 18063521 18063671 -132719882 - MER58 DNA MER1_type 0 2420 63 525 302 69 33 chr11 18063712 18064112 -132719441 + MLT1L LTR MaLR 146 605 -10 253 324 101 7 chr11 18064466 18064605 -132718948 + MIR3 SINE MIR 49 200 -8 666 316 149 36 chr11 18065713 18066723 -132716830 + L2 LINE L2 1746 2870 -444 388 321 30 90 chr11 18066820 18067088 -132716465 + L2 LINE L2 3021 3272 0 304 291 0 68 chr11 18067216 18067319 -132716234 - L1ME LINE L1 -382 5739 5644 290 263 25 59 chr11 18067966 18068084 -132715469 - MIR SINE MIR -72 190 77 6081 168 31 20 chr11 18068226 18069730 -132713823 + L1MC1 LINE L1 4810 6328 -5 916 228 41 98 chr11 18069697 18069785 -132713768 + L1MD2 LINE L1 5152 5243 -1116 * 2268 100 129 5 chr11 18069785 18070166 -132713387 - MSTA LTR MaLR 0 428 1 916 228 41 98 chr11 18070166 18070794 -132712759 + L1MD2 LINE L1 5243 5971 -388 2314 106 0 16 chr11 18070794 18071105 -132712448 + AluSx SINE Alu 1 306 -6 916 228 41 98 chr11 18071105 18071474 -132712079 + L1MD2 LINE L1 5971 6359 0 1850 139 58 4 chr11 18072056 18072372 -132711181 - AluSx SINE Alu 0 331 1 2227 120 3 16 chr11 18073970 18074286 -132709267 + AluSx SINE Alu 1 312 0 1998 143 0 7 chr11 18074931 18075224 -132708329 + AluSc SINE Alu 16 306 -3 787 299 95 7 chr11 18075684 18076020 -132707533 - MIR SINE MIR 0 262 12 590 331 64 21 chr11 18077172 18077547 -132706006 - LTR16C LTR ERVL -2 489 99 425 300 23 8 chr11 18077863 18077993 -132705560 + MIR SINE MIR 47 178 -84 372 289 19 0 chr11 18078868 18078972 -132704581 + MIR3 SINE MIR 65 170 -38 555 295 46 25 chr11 18079740 18079977 -132703576 - MIR SINE MIR -13 249 8 357 274 9 9 chr11 18080271 18080377 -132703176 + MIR SINE MIR 38 143 -65 2364 257 45 49 chr11 18081953 18083035 -132700518 + L2 LINE L2 2203 3276 -37 335 172 0 0 chr11 18083581 18083639 -132699914 - MLT1E2 LTR MaLR -3 651 594 3513 161 35 18 chr11 18083645 18084324 -132699229 + L1MB7 LINE L1 5397 6087 -97 1647 241 125 13 chr11 18084324 18084868 -132698685 - MLT1E2 LTR MaLR -10 616 12 182 323 15 15 chr11 18085001 18085066 -132698487 + L2 LINE L2 3201 3265 -7 292 250 25 25 chr11 18085633 18085713 -132697840 - L2 LINE L2 0 3272 3193 1279 211 204 15 chr11 18085726 18086182 -132697371 + MLT1F LTR MaLR 1 542 0 248 360 50 14 chr11 18086703 18086842 -132696711 + L3 LINE CR1 151 294 -1283 589 284 90 5 chr11 18087122 18087344 -132696209 - MIR SINE MIR -2 260 20 243 286 0 29 chr11 18088062 18088132 -132695421 - MIR3 SINE MIR -32 176 109 214 330 6 22 chr11 18088588 18088767 -132694786 + G-rich Low_complexity Low_complexity 2 177 0 266 210 290 0 chr11 18089638 18089738 -132693815 + L2 LINE L2 2924 3052 -220 593 317 24 5 chr11 18090347 18090552 -132693001 - MIR SINE MIR -4 258 50 210 320 40 10 chr11 18090586 18090686 -132692867 + L2 LINE L2 3089 3191 -81 569 220 99 7 chr11 18090754 18090895 -132692658 + MIR SINE MIR 4 157 -105 306 157 43 14 chr11 18091635 18091705 -132691848 + L2 LINE L2 3239 3310 -3 477 217 167 0 chr11 18093066 18093186 -132690367 + MIR SINE MIR 49 188 -74 276 295 62 0 chr11 18093620 18093732 -132689821 - MIR SINE MIR -3 259 141 919 257 164 55 chr11 18093732 18094226 -132689327 + MLT1H LTR MaLR 1 548 -1 2389 143 16 21 chr11 18094238 18094673 -132688880 - L1MC1 LINE L1 -5 6328 5896 369 0 0 0 chr11 18094942 18094983 -132688570 + (TTTA)n Simple_repeat Simple_repeat 3 43 0 1505 146 9 131 chr11 18095001 18095322 -132688231 - AluJo SINE Alu -30 282 1 446 273 21 105 chr11 18095333 18095422 -132688131 - MIR SINE MIR -17 245 150 1799 155 14 14 chr11 18095422 18095739 -132687814 - AluJb SINE Alu 0 317 1 446 273 21 105 chr11 18095739 18095886 -132687667 - MIR SINE MIR -112 150 28 1319 243 53 49 chr11 18096260 18096406 -132687147 - MLT1J LTR MaLR -72 439 295 2151 184 108 17 chr11 18096406 18096867 -132686686 - MLT1D LTR MaLR 0 505 3 1319 243 53 49 chr11 18096867 18097073 -132686480 - MLT1J LTR MaLR -216 295 82 1730 191 34 16 chr11 18097073 18097456 -132686097 + MLT1B LTR MaLR 1 390 0 1319 243 53 49 chr11 18097456 18097534 -132686019 - MLT1J LTR MaLR -429 82 6 257 229 279 25 chr11 18097657 18097779 -132685774 - MIR SINE MIR 0 262 110 213 254 82 36 chr11 18097834 18097944 -132685609 - L2 LINE L2 -223 3049 2935 1081 356 71 29 chr11 18098007 18099022 -132684531 - L2 LINE L2 -472 2842 1785 1242 202 77 75 chr11 18099042 18099198 -132684355 + L1MC5 LINE L1 7240 7394 -567 2281 51 0 11 chr11 18099198 18099499 -132684054 + AluY SINE Alu 14 311 0 1242 202 77 75 chr11 18099499 18099871 -132683682 + L1MC5 LINE L1 7394 7770 -191 599 271 52 18 chr11 18099873 18100102 -132683451 + L1MC5 LINE L1 7677 7913 -48 266 249 4 21 chr11 18100563 18100679 -132682874 + MIR SINE MIR 37 149 -79 438 310 97 9 chr11 18101118 18101334 -132682219 - MIR SINE MIR 0 262 28 344 319 30 0 chr11 18101769 18101904 -132681649 - MIR3 SINE MIR -54 154 16 351 325 57 57 chr11 18102076 18102432 -132681121 + L2 LINE L2 2905 3258 -14 253 296 25 37 chr11 18104917 18104998 -132678555 - L3b LINE CR1 -209 1374 1295 2170 107 0 29 chr11 18105795 18106103 -132677450 + AluSx SINE Alu 1 299 -13 235 256 26 13 chr11 18106179 18106257 -132677296 + L2 LINE L2 3173 3251 -21 733 253 65 80 chr11 18106263 18106599 -132676954 + L2 LINE L2 2947 3277 -36 299 200 0 57 chr11 18108376 18108446 -132675107 - L2 LINE L2 0 3313 3248 933 357 99 8 chr11 18108789 18109519 -132674034 - L2 LINE L2 0 3313 2513 1366 248 210 23 chr11 18109531 18110409 -132673144 + L2 LINE L2 2252 3299 -14 239 323 63 31 chr11 18111129 18111256 -132672297 - MIR SINE MIR -78 184 54 27 29 0 0 chr11 18113028 18113062 -132670491 + GC_rich Low_complexity Low_complexity 1 34 0 22 35 0 0 chr11 18113620 18113649 -132669904 + GC_rich Low_complexity Low_complexity 1 29 0 393 236 0 87 chr11 18115096 18115223 -132668330 - MER5B DNA MER1_type -59 119 4 272 244 22 44 chr11 18115609 18115699 -132667854 - L2 LINE L2 -188 3084 2997 267 31 0 0 chr11 18115716 18115748 -132667805 + (CA)n Simple_repeat Simple_repeat 1 32 0 250 334 128 43 chr11 18116184 18116792 -132666761 - L2 LINE L2 -40 3232 2581 * 331 356 15 30 chr11 18116785 18116987 -132666566 - L2 LINE L2 -38 3275 3077 716 244 28 6 chr11 18117048 18117228 -132666325 - MER91A DNA MER1_type -1 195 12 2200 106 0 4 chr11 18117675 18117950 -132665603 + AluSg SINE Alu 6 279 -31 237 254 17 0 chr11 18118012 18118071 -132665482 - MIR SINE MIR -195 67 8 827 244 159 7 chr11 18118396 18118667 -132664886 + MER69 DNA AcHobo 1 312 -2214 2886 189 14 12 chr11 18118668 18119320 -132664233 + MER69 DNA AcHobo 1611 2263 -263 265 365 103 0 chr11 18119709 18119854 -132663699 + MIR3 SINE MIR 48 207 -1 4039 182 48 40 chr11 18120017 18120352 -132663201 - L1MB7 LINE L1 -19 6165 5834 2400 91 7 0 chr11 18120352 18120650 -132662903 - AluSx SINE Alu -12 300 1 4039 182 48 40 chr11 18120650 18121192 -132662361 - L1MB7 LINE L1 -350 5834 5298 1944 122 35 40 chr11 18121192 18121569 -132661984 + THE1C LTR MaLR 1 375 0 4039 182 48 40 chr11 18121569 18122182 -132661371 - L1MB7 LINE L1 -886 5298 4656 982 208 29 0 chr11 18122475 18122716 -132660837 + MER69 DNA AcHobo 2279 2526 0 246 277 72 0 chr11 18123241 18123324 -132660229 - MIR SINE MIR -75 133 45 945 170 40 58 chr11 18123332 18123555 -132659998 + MER20 DNA MER1_type 1 219 0 730 195 13 20 chr11 18124235 18124384 -132659169 - MIR SINE MIR -102 160 13 432 55 0 0 chr11 18125593 18125648 -132657905 + (TG)n Simple_repeat Simple_repeat 2 56 0 183 186 0 0 chr11 18125762 18125805 -132657748 + (CAGGC)n Simple_repeat Simple_repeat 3 45 0 202 349 48 16 chr11 18126412 18126538 -132657015 + L2 LINE L2 3142 3271 -1 396 0 0 0 chr11 18126970 18127014 -132656539 + (TG)n Simple_repeat Simple_repeat 2 45 0 22 0 0 0 chr11 18127331 18127353 -132656200 + GC_rich Low_complexity Low_complexity 1 22 0 215 132 26 0 chr11 18127559 18127597 -132655956 + (CGG)n Simple_repeat Simple_repeat 2 40 0 206 237 35 35 chr11 18127592 18127706 -132655847 + (CCCCG)n Simple_repeat Simple_repeat 5 118 0 * 666 316 149 36 chr11 18329504 18330514 -132453039 + L2 LINE L2 1746 2870 -444 388 321 30 90 chr11 18330611 18330879 -132452674 + L2 LINE L2 3021 3272 0 304 291 0 68 chr11 18331007 18331110 -132452443 - L1ME LINE L1 -382 5739 5644 290 263 25 59 chr11 18331757 18331875 -132451678 - MIR SINE MIR -72 190 77 6076 168 31 20 chr11 18332017 18333521 -132450032 + L1MC1 LINE L1 4810 6328 -5 916 228 41 98 chr11 18333488 18333576 -132449977 + L1MD2 LINE L1 5152 5243 -1116 * 2268 100 129 5 chr11 18333576 18333957 -132449596 - MSTA LTR MaLR 0 428 1 916 228 41 98 chr11 18333957 18334585 -132448968 + L1MD2 LINE L1 5243 5971 -388 2298 109 0 16 chr11 18334585 18334896 -132448657 + AluSx SINE Alu 1 306 -6 916 228 41 98 chr11 18334896 18335265 -132448288 + L1MD2 LINE L1 5971 6359 0 1864 135 58 4 chr11 18335847 18336163 -132447390 - AluSx SINE Alu 0 331 1 2227 120 3 16 chr11 18337761 18338077 -132445476 + AluSx SINE Alu 1 312 0 1998 143 0 7 chr11 18338722 18339015 -132444538 + AluSc SINE Alu 16 306 -3 787 299 95 7 chr11 18339475 18339811 -132443742 - MIR SINE MIR 0 262 12 590 331 64 21 chr11 18340959 18341334 -132442219 - LTR16C LTR ERVL -2 489 99 425 300 23 8 chr11 18341650 18341780 -132441773 + MIR SINE MIR 47 178 -84 372 289 19 0 chr11 18342655 18342759 -132440794 + MIR3 SINE MIR 65 170 -38 555 295 46 25 chr11 18343527 18343764 -132439789 - MIR SINE MIR -13 249 8 357 274 9 9 chr11 18344058 18344164 -132439389 + MIR SINE MIR 38 143 -65 2364 257 45 49 chr11 18345740 18346822 -132436731 + L2 LINE L2 2203 3276 -37 335 172 0 0 chr11 18347368 18347426 -132436127 - MLT1E2 LTR MaLR -3 651 594 3513 161 35 18 chr11 18347432 18348111 -132435442 + L1MB7 LINE L1 5397 6087 -97 1647 241 125 13 chr11 18348111 18348655 -132434898 - MLT1E2 LTR MaLR -10 616 12 182 323 15 15 chr11 18348788 18348853 -132434700 + L2 LINE L2 3201 3265 -7 292 250 25 25 chr11 18349420 18349500 -132434053 - L2 LINE L2 0 3272 3193 1279 211 204 15 chr11 18349513 18349969 -132433584 + MLT1F LTR MaLR 1 542 0 248 360 50 14 chr11 18350490 18350629 -132432924 + L3 LINE CR1 151 294 -1283 597 293 86 0 chr11 18350909 18351131 -132432422 - MIR SINE MIR -2 260 20 243 286 0 29 chr11 18351849 18351919 -132431634 - MIR3 SINE MIR -32 176 109 214 330 6 22 chr11 18352375 18352554 -132430999 + G-rich Low_complexity Low_complexity 2 177 0 266 210 290 0 chr11 18353426 18353526 -132430027 + L2 LINE L2 2924 3052 -220 593 317 24 5 chr11 18354135 18354340 -132429213 - MIR SINE MIR -4 258 50 210 320 40 10 chr11 18354374 18354474 -132429079 + L2 LINE L2 3089 3191 -81 569 220 99 7 chr11 18354542 18354683 -132428870 + MIR SINE MIR 4 157 -105 306 157 43 14 chr11 18355423 18355493 -132428060 + L2 LINE L2 3239 3310 -3 477 217 167 0 chr11 18356854 18356974 -132426579 + MIR SINE MIR 49 188 -74 276 295 62 0 chr11 18357408 18357520 -132426033 - MIR SINE MIR -3 259 141 944 255 164 55 chr11 18357520 18358014 -132425539 + MLT1H LTR MaLR 1 548 -1 2401 140 16 21 chr11 18358026 18358461 -132425092 - L1MC1 LINE L1 -5 6328 5896 369 0 0 0 chr11 18358730 18358771 -132424782 + (TTTA)n Simple_repeat Simple_repeat 3 43 0 1505 146 9 131 chr11 18358789 18359110 -132424443 - AluJo SINE Alu -30 282 1 446 273 21 105 chr11 18359121 18359210 -132424343 - MIR SINE MIR -17 245 150 1799 155 14 14 chr11 18359210 18359527 -132424026 - AluJb SINE Alu 0 317 1 446 273 21 105 chr11 18359527 18359674 -132423879 - MIR SINE MIR -112 150 28 1319 243 53 49 chr11 18360048 18360194 -132423359 - MLT1J LTR MaLR -72 439 295 2151 184 108 17 chr11 18360194 18360655 -132422898 - MLT1D LTR MaLR 0 505 3 1319 243 53 49 chr11 18360655 18360861 -132422692 - MLT1J LTR MaLR -216 295 82 1730 191 34 16 chr11 18360861 18361244 -132422309 + MLT1B LTR MaLR 1 390 0 1319 243 53 49 chr11 18361244 18361322 -132422231 - MLT1J LTR MaLR -429 82 6 257 229 279 25 chr11 18361445 18361567 -132421986 - MIR SINE MIR 0 262 110 213 254 82 36 chr11 18361622 18361732 -132421821 - L2 LINE L2 -223 3049 2935 1081 356 71 29 chr11 18361795 18362810 -132420743 - L2 LINE L2 -472 2842 1785 1242 202 77 75 chr11 18362830 18362986 -132420567 + L1MC5 LINE L1 7240 7394 -567 2281 51 0 11 chr11 18362986 18363287 -132420266 + AluY SINE Alu 14 311 0 1242 202 77 75 chr11 18363287 18363659 -132419894 + L1MC5 LINE L1 7394 7770 -191 599 271 52 18 chr11 18363661 18363890 -132419663 + L1MC5 LINE L1 7677 7913 -48 266 249 4 21 chr11 18364351 18364467 -132419086 + MIR SINE MIR 37 149 -79 438 310 97 9 chr11 18364906 18365122 -132418431 - MIR SINE MIR 0 262 28 344 319 30 0 chr11 18365557 18365692 -132417861 - MIR3 SINE MIR -54 154 16 351 325 57 57 chr11 18365864 18366220 -132417333 + L2 LINE L2 2905 3258 -14 253 296 25 37 chr11 18368705 18368786 -132414767 - L3b LINE CR1 -209 1374 1295 2170 107 0 29 chr11 18369583 18369891 -132413662 + AluSx SINE Alu 1 299 -13 235 256 26 13 chr11 18369967 18370045 -132413508 + L2 LINE L2 3173 3251 -21 733 253 65 80 chr11 18370051 18370387 -132413166 + L2 LINE L2 2947 3277 -36 299 200 0 57 chr11 18372164 18372234 -132411319 - L2 LINE L2 0 3313 3248 933 357 99 8 chr11 18372577 18373307 -132410246 - L2 LINE L2 0 3313 2513 1357 249 210 23 chr11 18373319 18374197 -132409356 + L2 LINE L2 2252 3299 -14 239 323 63 31 chr11 18374917 18375044 -132408509 - MIR SINE MIR -78 184 54 27 29 0 0 chr11 18376816 18376850 -132406703 + GC_rich Low_complexity Low_complexity 1 34 0 22 35 0 0 chr11 18377408 18377437 -132406116 + GC_rich Low_complexity Low_complexity 1 29 0 393 236 0 87 chr11 18378884 18379011 -132404542 - MER5B DNA MER1_type -59 119 4 272 244 22 44 chr11 18379397 18379487 -132404066 - L2 LINE L2 -188 3084 2997 267 31 0 0 chr11 18379504 18379536 -132404017 + (CA)n Simple_repeat Simple_repeat 1 32 0 313 332 123 34 chr11 18379972 18380580 -132402973 - L2 LINE L2 -40 3232 2581 * 359 380 18 22 chr11 18380573 18380799 -132402754 - L2 LINE L2 -38 3275 3051 743 244 28 6 chr11 18380836 18381016 -132402537 - MER91A DNA MER1_type -1 195 12 2098 106 0 4 chr11 18381463 18381738 -132401815 + AluSg SINE Alu 6 279 -31 257 254 17 0 chr11 18381800 18381859 -132401694 - MIR SINE MIR -195 67 8 735 244 159 7 chr11 18382184 18382455 -132401098 + MER69 DNA AcHobo 1 312 -2214 2691 189 14 12 chr11 18382456 18383108 -132400445 + MER69 DNA AcHobo 1611 2263 -263 273 323 72 30 chr11 18383493 18383660 -132399893 + MIR3 SINE MIR 43 207 -1 3776 184 47 38 chr11 18383805 18384138 -132399415 - L1MB7 LINE L1 -19 6165 5837 2273 94 7 0 chr11 18384138 18384437 -132399116 - AluSx SINE Alu -11 301 1 3776 184 47 38 chr11 18384437 18384979 -132398574 - L1MB7 LINE L1 -347 5837 5301 2121 122 35 40 chr11 18384979 18385356 -132398197 + THE1C LTR MaLR 1 375 0 3776 184 47 38 chr11 18385356 18385969 -132397584 - L1MB7 LINE L1 -883 5301 4656 916 208 29 0 chr11 18386262 18386503 -132397050 + MER69 DNA AcHobo 2279 2526 0 268 281 64 29 chr11 18387009 18387118 -132396435 - MIR SINE MIR -64 144 34 1047 170 40 58 chr11 18387119 18387342 -132396211 + MER20 DNA MER1_type 1 219 0 729 218 13 19 chr11 18388015 18388171 -132395382 - MIR SINE MIR -95 167 13 432 55 0 0 chr11 18389380 18389435 -132394118 + (TG)n Simple_repeat Simple_repeat 2 56 0 183 186 0 0 chr11 18389549 18389592 -132393961 + (CAGGC)n Simple_repeat Simple_repeat 3 45 0 233 349 48 16 chr11 18390199 18390325 -132393228 + L2 LINE L2 3142 3271 -1 432 0 0 0 chr11 18390757 18390805 -132392748 + (TG)n Simple_repeat Simple_repeat 2 49 0 22 0 0 0 chr11 18391122 18391144 -132392409 + GC_rich Low_complexity Low_complexity 1 22 0 215 132 26 0 chr11 18391350 18391388 -132392165 + (CGG)n Simple_repeat Simple_repeat 2 40 0 * 229 246 53 9 chr11 18391383 18391497 -132392056 + (CCCCG)n Simple_repeat Simple_repeat 5 123 0 27 29 0 0 chr11 18391804 18391838 -132391715 + GC_rich Low_complexity Low_complexity 1 34 0 377 147 27 0 chr11 18392171 18392246 -132391307 + CT-rich Low_complexity Low_complexity 2 78 0 309 269 28 21 chr11 18393304 18393445 -132390108 + (TG)n Simple_repeat Simple_repeat 1 142 0 329 248 48 0 chr11 18393997 18394102 -132389451 + MIR3 SINE MIR 81 190 -18 236 286 14 0 chr11 18394635 18394705 -132388848 - MIR SINE MIR -108 100 30 359 231 32 64 chr11 18395430 18395586 -132387967 - MIR3 SINE MIR -54 154 4 261 0 0 0 chr11 18395880 18395909 -132387644 + (TG)n Simple_repeat Simple_repeat 1 29 0 273 128 0 0 chr11 18396173 18396220 -132387333 + (TG)n Simple_repeat Simple_repeat 2 48 0 210 37 0 0 chr11 18397148 18397175 -132386378 + (TG)n Simple_repeat Simple_repeat 2 28 0 554 262 14 7 chr11 18397784 18397925 -132385628 + MIR SINE MIR 121 262 0 663 294 112 17 chr11 18397976 18398435 -132385118 + L2 LINE L2 2555 3062 -251 354 232 69 62 chr11 18398562 18398707 -132384846 - MIR SINE MIR -71 137 23 278 280 85 8 chr11 18399204 18399322 -132384231 - MIR3 SINE MIR -49 159 33 613 321 28 36 chr11 18399561 18399810 -132383743 - MIR SINE MIR -14 248 2 460 346 0 0 chr11 18400615 18400745 -132382808 + MIR3 SINE MIR 76 205 -3 485 245 192 0 chr11 18401499 18401650 -132381903 + MER5A DNA MER1_type 10 189 0 1142 285 160 11 chr11 18401794 18402575 -132380978 + L2 LINE L2 2399 3313 0 244 268 0 28 chr11 18403011 18403082 -132380471 + C-rich Low_complexity Low_complexity 1 69 0 748 259 132 0 chr11 18403295 18403507 -132380046 + MIR SINE MIR 20 259 -3 284 240 94 0 chr11 18403693 18403789 -132379764 + MIR SINE MIR 33 137 -71 716 258 253 21 chr11 18404505 18404885 -132378668 - L2 LINE L2 0 3313 2846 670 227 29 19 chr11 18404909 18405116 -132378437 + L1PB4 LINE L1 5948 6156 0 591 228 129 18 chr11 18405574 18405745 -132377808 + MIR SINE MIR 6 195 -67 263 350 50 14 chr11 18406269 18406409 -132377144 + MIR SINE MIR 40 184 -78 429 286 110 18 chr11 18406517 18406738 -132376815 + MIR SINE MIR 11 254 -8 206 311 53 67 chr11 18407126 18407335 -132376218 + L2 LINE L2 2853 3058 -214 305 279 22 59 chr11 18407536 18407672 -132375881 - MIR SINE MIR -91 171 41 190 347 21 42 chr11 18407655 18407750 -132375803 + MIR3 SINE MIR 115 207 -1 * 421 288 0 31 chr11 18407782 18407942 -132375611 + (TGGA)n Simple_repeat Simple_repeat 4 158 0 706 275 62 25 chr11 18409132 18409372 -132374181 + MIR SINE MIR 8 256 -6 276 176 0 0 chr11 18409448 18409499 -132374054 + L2 LINE L2 3222 3272 0 285 271 30 68 chr11 18409638 18409771 -132373782 - MIR3 SINE MIR -16 192 65 252 241 48 12 chr11 18411233 18411316 -132372237 - L2 LINE L2 -101 3212 3127 192 267 58 35 chr11 18411348 18411434 -132372119 + MIR SINE MIR 47 134 -128 3022 268 93 20 chr11 18411474 18412609 -132370944 - L2 LINE L2 -160 3153 1934 368 278 77 98 chr11 18412620 18412947 -132370606 + L2 LINE L2 2948 3267 -5 348 24 0 0 chr11 18413028 18413069 -132370484 + (CA)n Simple_repeat Simple_repeat 2 42 0 539 240 120 26 chr11 18413405 18413597 -132369956 + MIR SINE MIR 3 212 -50 510 351 89 29 chr11 18413783 18414099 -132369454 + L3 LINE CR1 1179 1513 -64 17095 99 21 6 chr11 18414118 18416500 -132367053 - Tigger1 DNA MER2_type 0 2418 1 302 344 84 0 chr11 18417287 18417418 -132366135 + MIR SINE MIR 84 225 -37 321 319 84 0 chr11 18418038 18418157 -132365396 - MIR SINE MIR -64 144 16 198 341 47 12 chr11 18418262 18418347 -132365206 + MER5A DNA MER1_type 27 114 -75 253 254 105 26 chr11 18418981 18419095 -132364458 - MIR3 SINE MIR -78 130 8 418 204 27 0 chr11 18419966 18420231 -132363322 + (CA)n Simple_repeat Simple_repeat 1 272 0 240 150 38 0 chr11 18420246 18420326 -132363227 + (CA)n Simple_repeat Simple_repeat 1 83 0 534 189 29 14 chr11 18420373 18420806 -132362747 + (CA)n Simple_repeat Simple_repeat 1 439 0 370 257 35 0 chr11 18421599 18421712 -132361841 - MIR3 SINE MIR -32 176 60 1857 74 7 52 chr11 18423383 18423654 -132359899 + AluSx SINE Alu 39 297 -15 1133 113 65 0 chr11 18423654 18423822 -132359731 + AluSg/x SINE Alu 134 312 0 337 338 68 0 chr11 18423840 18423973 -132359580 + MIR SINE MIR 47 188 -74 263 373 41 32 chr11 18424689 18424992 -132358561 - L2 LINE L2 -208 3064 2751 282 282 0 0 chr11 18425825 18425956 -132357597 + GA-rich Low_complexity Low_complexity 1 131 0 221 245 0 0 chr11 18425956 18426038 -132357515 + GA-rich Low_complexity Low_complexity 1 82 0 809 153 0 29 chr11 18426067 18426193 -132357360 + FLAM_C SINE Alu 1 124 -188 180 97 0 0 chr11 18426193 18426224 -132357329 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 210 143 0 0 chr11 18426235 18426270 -132357283 + (GGAA)n Simple_repeat Simple_repeat 4 38 0 308 295 18 18 chr11 18426370 18426482 -132357071 + MIR3 SINE MIR 91 202 -6 443 322 20 14 chr11 18427347 18427493 -132356060 - L3 LINE CR1 -4 1573 1427 597 254 183 0 chr11 18427766 18428006 -132355547 - MLT1J2 LTR MaLR -9 441 158 24 0 0 0 chr11 18438445 18438469 -132345084 + AT_rich Low_complexity Low_complexity 1 24 0 309 319 22 14 chr11 18440216 18440354 -132343199 - MIR3 SINE MIR -2 206 68 457 242 50 0 chr11 18440838 18440963 -132342590 - MIR SINE MIR -45 163 28 246 385 35 7 chr11 18441968 18442111 -132341442 - L2 LINE L2 -4 3268 3122 217 330 0 52 chr11 18443178 18443275 -132340278 + MIR3 SINE MIR 85 176 -32 781 288 142 30 chr11 18445170 18445932 -132337621 + L2 LINE L2 2458 3309 -4 186 258 81 16 chr11 18445943 18446005 -132337548 - MIR SINE MIR -169 93 28 325 337 51 28 chr11 18446090 18446268 -132337285 - L1ME4a LINE L1 -4 6117 5936 1202 153 0 20 chr11 18446328 18446524 -132337029 + AluSg/x SINE Alu 121 312 0 364 279 76 98 chr11 18446795 18447599 -132335954 - L1ME4a LINE L1 -217 5953 5174 805 301 44 44 chr11 18447609 18448104 -132335449 - L1ME LINE L1 -299 5822 5328 1007 233 55 28 chr11 18448112 18448365 -132335188 + MIR SINE MIR 3 262 0 291 235 23 42 chr11 18449159 18449295 -132334258 - MIR SINE MIR -49 213 23 545 227 227 6 chr11 18449315 18449491 -132334062 - MER58C DNA MER1_type 0 215 1 498 267 81 68 chr11 18450643 18450879 -132332674 + MLT1J LTR MaLR 94 332 -179 460 201 106 7 chr11 18450907 18451047 -132332506 - MIR SINE MIR -65 143 33 701 263 140 0 chr11 18451076 18451304 -132332249 - MIR SINE MIR 0 262 3 191 372 74 0 chr11 18452217 18452338 -132331215 - L2 LINE L2 -25 3247 3118 233 313 36 36 chr11 18452354 18452466 -132331087 + L1MC/D LINE L1 5668 5779 -2029 1971 145 83 19 chr11 18452839 18453211 -132330342 + MSTD LTR MaLR 1 396 0 1237 259 184 7 chr11 18453572 18454235 -132329318 + L2 LINE L2 2529 3312 -1 205 246 15 15 chr11 18454738 18454803 -132328750 - MIR SINE MIR -56 152 88 254 328 119 0 chr11 18455262 18455396 -132328157 - MIR SINE MIR -6 256 107 246 412 101 0 chr11 18455662 18455958 -132327595 - L3 LINE CR1 -460 1117 792 825 181 23 29 chr11 18456667 18456975 -132326578 - L1MC1 LINE L1 -1 6332 5993 1148 288 127 22 chr11 18457005 18457421 -132326132 - L2 LINE L2 -16 3297 2926 2710 45 0 0 chr11 18457421 18457730 -132325823 + AluY SINE Alu 1 309 -2 1148 288 127 22 chr11 18457730 18458190 -132325363 - L2 LINE L2 -387 2926 2316 1408 217 98 41 chr11 18458991 18459532 -132324021 + L2 LINE L2 2737 3312 -1 237 313 263 6 chr11 18459966 18460145 -132323408 + MIR SINE MIR 32 256 -6 180 77 0 0 chr11 18460986 18461012 -132322541 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 251 292 42 71 chr11 18461077 18461245 -132322308 + MIR SINE MIR 100 262 0 587 276 29 12 chr11 18461683 18461853 -132321700 + MIR3 SINE MIR 30 202 -6 183 409 9 27 chr11 18462045 18462155 -132321398 - MIR SINE MIR -80 128 21 250 323 47 16 chr11 18462207 18462334 -132321219 + MIR SINE MIR 16 146 -62 485 326 77 9 chr11 18462847 18463080 -132320473 - MIR SINE MIR -2 260 12 2661 135 17 7 chr11 18464709 18465131 -132318422 - MSTB LTR MaLR 0 426 1 242 337 30 10 chr11 18465873 18465974 -132317579 - L2 LINE L2 -527 2787 2685 180 277 0 0 chr11 18466017 18466064 -132317489 - MIR SINE MIR -11 251 205 261 263 11 42 chr11 18466958 18467053 -132316500 - MIR3 SINE MIR -8 200 109 192 227 127 73 chr11 18467137 18467247 -132316306 + L2 LINE L2 3138 3253 -19 473 349 12 0 chr11 18467624 18467790 -132315763 - MIR3 SINE MIR -24 184 17 310 291 0 0 chr11 18468397 18468476 -132315077 + L2 LINE L2 3235 3313 0 232 253 11 46 chr11 18469244 18469331 -132314222 + L2 LINE L2 3229 3312 -1 449 265 25 107 chr11 18469564 18469760 -132313793 + MIR SINE MIR 37 216 -46 311 361 70 0 chr11 18469786 18469941 -132313612 - MIR3 SINE MIR -66 142 2 1736 146 191 13 chr11 18470628 18471006 -132312547 + MLT2C2 LTR ERVL 1 445 -19 259 163 0 0 chr11 18471029 18471072 -132312481 + MLT2C2 LTR ERVL 422 464 0 265 232 21 53 chr11 18471085 18471180 -132312373 - MIR SINE MIR -54 208 117 1819 157 0 27 chr11 18471415 18471715 -132311838 + AluJo SINE Alu 11 302 -10 2149 91 0 54 chr11 18471824 18472146 -132311407 + AluSx SINE Alu 1 306 0 2427 88 7 0 chr11 18472149 18472456 -132311097 + AluSc SINE Alu 1 309 0 892 209 4 74 chr11 18473646 18473721 -132309832 - MIR SINE MIR 0 262 183 2490 70 0 13 chr11 18473721 18474023 -132309530 - AluY SINE Alu -13 298 1 892 209 4 74 chr11 18474023 18474191 -132309362 - MIR SINE MIR -79 183 36 352 276 126 0 chr11 18474195 18474322 -132309231 - MIR SINE MIR -71 191 49 285 296 22 52 chr11 18474747 18474882 -132308671 + MIR SINE MIR 65 195 -67 590 286 92 21 chr11 18474897 18475138 -132308415 - MIR SINE MIR -10 252 4 311 332 80 25 chr11 18475167 18475532 -132308021 + L2 LINE L2 2659 3090 -182 382 282 167 0 chr11 18475890 18476101 -132307452 - MIR3 SINE MIR 0 262 3 1917 140 16 32 chr11 18476337 18476651 -132306902 - AluJb SINE Alu -3 309 1 611 254 30 18 chr11 18476937 18477106 -132306447 + MIR SINE MIR 2 172 -90 1079 229 108 39 chr11 18477137 18477469 -132306084 + MLT1D LTR MaLR 1 355 -150 777 203 101 65 chr11 18477521 18477797 -132305756 + MLT1C LTR MaLR 164 449 -18 346 361 16 0 chr11 18477915 18478037 -132305516 + L2 LINE L2 3190 3313 0 457 252 44 31 chr11 18478040 18478199 -132305354 + L2 LINE L2 2891 3051 -221 293 260 83 0 chr11 18479236 18479332 -132304221 - MIR SINE MIR -102 160 57 3109 164 38 23 chr11 18479338 18479946 -132303607 - L1MC3 LINE L1 -8 7777 7161 844 259 92 76 chr11 18480310 18480527 -132303026 + MLT1J LTR MaLR 1 213 -298 2668 37 0 0 chr11 18480527 18480822 -132302731 + AluY SINE Alu 1 295 -16 844 259 92 76 chr11 18480822 18481020 -132302533 + MLT1J LTR MaLR 213 426 -85 1796 164 41 41 chr11 18481020 18481410 -132302143 - MLT1B LTR MaLR 0 390 1 844 259 92 76 chr11 18481410 18481452 -132302101 + MLT1J LTR MaLR 426 466 -45 450 256 43 34 chr11 18481616 18481733 -132301820 - L2 LINE L2 -1 3271 3154 321 208 100 83 chr11 18482437 18482557 -132300996 + MIR SINE MIR 49 170 -92 301 248 109 0 chr11 18482607 18482708 -132300845 - MIR SINE MIR 0 262 151 986 154 17 0 chr11 18483038 18483213 -132300340 + L1MB3 LINE L1 5997 6174 -9 252 232 0 59 chr11 18483439 18483533 -132300020 - MIR SINE MIR -108 100 14 406 284 55 8 chr11 18485616 18485743 -132297810 + MIR SINE MIR 7 139 -123 287 282 218 21 chr11 18485774 18485916 -132297637 - MER5A DNA MER1_type -10 179 10 304 178 27 55 chr11 18486711 18486784 -132296769 + L2 LINE L2 3201 3271 -1 978 203 72 23 chr11 18486870 18487034 -132296519 - MSTD LTR MaLR 0 396 241 1023 117 0 0 chr11 18487034 18487196 -132296357 + (GA)n Simple_repeat Simple_repeat 2 163 0 978 203 72 23 chr11 18487196 18487366 -132296187 - MSTD LTR MaLR -155 241 1 555 264 25 6 chr11 18487621 18487780 -132295773 - MER5A DNA MER1_type -9 180 19 311 236 36 55 chr11 18488528 18488638 -132294915 + MIR SINE MIR 36 143 -65 2145 120 48 34 chr11 18488640 18488998 -132294555 + THE1B LTR MaLR 2 364 0 11520 84 21 16 chr11 18488998 18490564 -132292989 + THE1B-int LTR MaLR 1 1574 -6 2078 129 47 47 chr11 18490569 18490933 -132292620 + THE1B LTR MaLR 1 364 0 227 286 0 0 chr11 18490936 18490985 -132292568 + L3 LINE CR1 1518 1566 -11 292 235 163 0 chr11 18491414 18491512 -132292041 + L2 LINE L2 3156 3269 -3 329 362 32 27 chr11 18491981 18492169 -132291384 + L2 LINE L2 3081 3269 -3 379 269 11 0 chr11 18492588 18492681 -132290872 - L2 LINE L2 -2 3270 3177 271 233 0 0 chr11 18492919 18492979 -132290574 + MER117 DNA MER1_type 74 133 -64 276 292 174 66 chr11 18493133 18493496 -132290057 + L2 LINE L2 2871 3272 0 2401 116 41 46 chr11 18493823 18494163 -132289390 + MSTB1 LTR MaLR 21 360 -72 2231 97 0 26 chr11 18494163 18494472 -132289081 - AluSg SINE Alu -9 301 1 2401 116 41 46 chr11 18494472 18494545 -132289008 + MSTB1 LTR MaLR 360 432 0 436 301 46 0 chr11 18494995 18495148 -132288405 - MIR SINE MIR -6 256 97 336 291 35 14 chr11 18495135 18495276 -132288277 + MIR SINE MIR 93 236 -26 * 200 245 0 0 chr11 18495314 18495363 -132288190 - MIR SINE MIR -156 106 58 287 340 1 47 chr11 18495403 18495573 -132287980 + MIR SINE MIR 40 200 -59 385 260 104 26 chr11 18496291 18496445 -132287108 - MIR SINE MIR -66 196 31 240 236 211 0 chr11 18496509 18496632 -132286921 - L3 LINE CR1 -3 1574 1426 843 305 78 66 chr11 18497739 18498736 -132284817 + L2 LINE L2 2302 3311 -2 369 275 179 34 chr11 18498941 18499148 -132284405 - MIR SINE MIR -11 251 15 547 303 56 17 chr11 18499853 18500087 -132283466 - MIR SINE MIR -18 244 2 322 302 48 24 chr11 18500189 18500315 -132283238 - L2 LINE L2 -5 3267 3139 279 268 71 77 chr11 18500425 18500593 -132282960 - MER5A DNA MER1_type -11 167 1 * 292 273 0 0 chr11 18500593 18500667 -132282886 - MIR3 SINE MIR -53 155 82 32 57 0 0 chr11 18500720 18500773 -132282780 + AT_rich Low_complexity Low_complexity 1 53 0 1015 114 228 0 chr11 18501316 18501406 -132282147 + MER30 DNA MER1_type 1 69 -161 240 43 65 0 chr11 18501406 18501452 -132282101 + A-rich Low_complexity Low_complexity 2 50 0 1015 114 228 0 chr11 18501452 18501545 -132282008 + MER30 DNA MER1_type 69 226 -4 192 333 0 10 chr11 18501845 18501941 -132281612 - L2 LINE L2 -1231 2083 1989 258 284 33 95 chr11 18501945 18502156 -132281397 + MIR3 SINE MIR 4 201 -7 202 235 102 92 chr11 18502225 18502323 -132281230 - MIR3 SINE MIR -1 207 109 234 195 322 0 chr11 18502395 18502482 -132281071 + L2 LINE L2 3158 3272 0 504 321 31 0 chr11 18503181 18503343 -132280210 + MIR SINE MIR 84 250 -12 430 255 115 35 chr11 18503905 18504105 -132279448 + MIR SINE MIR 32 247 -15 427 285 17 6 chr11 18504259 18504431 -132279122 - MER5B DNA MER1_type -4 174 1 184 327 0 0 chr11 18504572 18504627 -132278926 - L2 LINE L2 -14 3299 3245 435 278 28 17 chr11 18505187 18505367 -132278186 - L1ME LINE L1 -377 5744 5563 350 311 37 15 chr11 18505380 18505515 -132278038 - MIR3 SINE MIR -67 141 4 562 302 51 24 chr11 18506134 18506389 -132277164 - MIR SINE MIR 0 262 1 1834 179 93 6 chr11 18506457 18506810 -132276743 - MSTD LTR MaLR -12 384 1 312 319 51 7 chr11 18507427 18507566 -132275987 + MIR SINE MIR 17 146 -62 642 296 38 5 chr11 18507640 18507853 -132275700 - MIR SINE MIR -27 235 16 554 179 0 41 chr11 18508674 18508797 -132274756 - MIR SINE MIR -125 137 20 302 227 184 30 chr11 18509231 18509407 -132274146 - MIR SINE MIR -49 213 7 519 260 72 83 chr11 18509509 18509774 -132273779 + MIR SINE MIR 1 262 0 206 310 0 42 chr11 18509777 18509848 -132273705 + L2 LINE L2 3193 3260 -12 1998 84 9 96 chr11 18510217 18510549 -132273004 + AluSx SINE Alu 1 303 -9 392 278 8 38 chr11 18511107 18511240 -132272313 + MLT2C2 LTR ERVL 336 464 0 237 261 29 14 chr11 18511312 18511381 -132272172 + L1MC/D LINE L1 5470 5539 -2246 372 327 90 0 chr11 18511393 18511549 -132272004 - MIR SINE MIR -37 225 56 1253 206 79 20 chr11 18511927 18512253 -132271300 - Tigger7 DNA MER2_type 0 2491 1 207 344 48 42 chr11 18512277 18512466 -132271087 + MIR3 SINE MIR 16 205 -3 470 212 152 0 chr11 18513125 18513276 -132270277 + MIR SINE MIR 89 262 0 424 255 102 19 chr11 18513707 18513864 -132269689 + MIR3 SINE MIR 36 205 -3 4459 269 99 43 chr11 18514325 18515166 -132268387 + HAL1 LINE L1 2 794 -1713 1171 238 148 30 chr11 18515166 18515632 -132267921 - LTR33 LTR ERVL 0 521 1 4459 269 99 43 chr11 18515632 18517163 -132266390 + HAL1 LINE L1 794 2507 0 343 336 48 0 chr11 18517174 18517299 -132266254 + MIR SINE MIR 18 148 -114 335 283 94 49 chr11 18517732 18517976 -132265577 - MIR SINE MIR -6 256 2 225 321 131 15 chr11 18518459 18518772 -132264781 + L2 LINE L2 2697 3060 -212 411 297 149 0 chr11 18518824 18518972 -132264581 - MIR3 SINE MIR -23 185 16 281 306 28 9 chr11 18519624 18519732 -132263821 + MIR SINE MIR 126 235 -27 261 0 0 0 chr11 18520115 18520144 -132263409 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 457 264 8 8 chr11 18520429 18520550 -132263003 - MIR3 SINE MIR -13 195 75 307 236 0 0 chr11 18521319 18521374 -132262179 + MIR SINE MIR 45 99 -109 322 290 38 15 chr11 18521424 18521555 -132261998 + L1P LINE L1 4902 5035 -1111 5254 112 58 50 chr11 18521582 18522530 -132261023 + Tigger3b DNA MER2_type 13 968 -263 315 218 0 0 chr11 18522695 18522750 -132260803 + MIR SINE MIR 45 99 -109 1366 96 32 0 chr11 18522832 18523019 -132260534 + Tigger3b DNA MER2_type 1017 1209 -22 1883 133 0 41 chr11 18523030 18523218 -132260335 - AluSx SINE Alu -30 282 88 2282 104 67 20 chr11 18523218 18523564 -132259989 - THE1B LTR MaLR -2 362 1 11893 100 5 1 chr11 18523564 18525138 -132258415 - THE1B-int LTR MaLR 0 1580 1 2423 93 48 22 chr11 18525138 18525493 -132258060 - THE1B LTR MaLR 0 364 1 1883 133 0 41 chr11 18525493 18525596 -132257957 - AluSx SINE Alu -221 91 1 328 297 54 54 chr11 18525631 18525915 -132257638 + L1MC4a LINE L1 5039 5325 -821 1659 195 60 14 chr11 18525915 18526264 -132257289 - MLT1A1 LTR MaLR 0 365 1 328 297 54 54 chr11 18526264 18526275 -132257278 + L1MC4a LINE L1 5324 5334 -812 2082 198 33 54 chr11 18526277 18526419 -132257134 + MLT1D LTR MaLR 1 145 -360 2482 108 13 24 chr11 18526419 18526798 -132256755 + THE1C LTR MaLR 1 375 0 2082 198 33 54 chr11 18526798 18527170 -132256383 + MLT1D LTR MaLR 145 504 -1 265 171 0 68 chr11 18527190 18527278 -132256275 + L1MC4a LINE L1 5347 5428 -2380 2793 216 100 64 chr11 18527280 18527747 -132255806 + L1ME3 LINE L1 4678 5127 -1035 2018 58 0 4 chr11 18527747 18527987 -132255566 + AluY SINE Alu 62 300 -11 2793 216 100 64 chr11 18527987 18528925 -132254628 + L1ME3 LINE L1 5127 6161 -1 1983 271 42 12 chr11 18528920 18529566 -132253987 + L1MC4a LINE L1 5412 6076 -1732 * 357 284 35 35 chr11 18529718 18529859 -132253694 + MIR SINE MIR 73 213 -49 315 0 0 0 chr11 18530167 18530202 -132253351 + (GGA)n Simple_repeat Simple_repeat 1 35 0 209 278 41 76 chr11 18530741 18530912 -132252641 - MIR3 SINE MIR -66 142 12 740 239 148 17 chr11 18531446 18531676 -132251877 - MIR SINE MIR 0 262 3 610 213 43 24 chr11 18531914 18532078 -132251475 + LTR45 LTR ERV1 359 525 0 269 264 284 0 chr11 18532996 18533144 -132250409 - MIR SINE MIR -53 209 20 194 321 18 36 chr11 18533597 18533709 -132249844 - L2 LINE L2 -25 3247 3138 388 287 30 0 chr11 18533765 18533866 -132249687 - MIR3 SINE MIR -7 201 98 724 239 118 0 chr11 18533884 18534104 -132249449 - MIR SINE MIR 0 262 19 304 262 64 50 chr11 18534938 18535079 -132248474 + HAL1b LINE L1 1204 1346 -2 417 282 73 26 chr11 18535202 18535436 -132248117 + L2 LINE L2 2831 3075 -197 272 290 153 32 chr11 18535901 18536025 -132247528 - MIR3 SINE MIR -14 194 56 802 126 6 88 chr11 18536025 18536184 -132247369 - L1MA6 LINE L1 -323 5977 5832 921 131 84 0 chr11 18536184 18536371 -132247182 + L1MA8 LINE L1 6082 6288 -3 650 196 348 10 chr11 18536867 18537163 -132246390 + L1ME4a LINE L1 5725 6120 -1 524 295 62 21 chr11 18537427 18537668 -132245885 - MIR SINE MIR 0 262 12 269 259 38 76 chr11 18538111 18538296 -132245257 + MIR SINE MIR 20 197 -65 317 271 86 89 chr11 18538333 18538638 -132244915 + L2 LINE L2 2706 3014 -258 2254 112 0 10 chr11 18538638 18538951 -132244602 + AluSx SINE Alu 1 310 -2 317 271 86 89 chr11 18538951 18539023 -132244530 + L2 LINE L2 3014 3085 -187 444 270 55 6 chr11 18539929 18540092 -132243461 - MIR SINE MIR -15 247 77 1694 178 7 14 chr11 18541832 18542119 -132241434 - AluJo SINE Alu -18 294 10 446 231 0 75 chr11 18542517 18542651 -132240902 + MIR SINE MIR 20 143 -65 180 293 121 76 chr11 18542720 18542832 -132240721 + L3 LINE CR1 232 358 -1219 1595 168 25 38 chr11 18542832 18543148 -132240405 + AluSx SINE Alu 1 312 0 180 293 121 76 chr11 18543148 18543233 -132240320 + L3 LINE CR1 358 438 -1139 210 234 0 117 chr11 18543849 18543943 -132239610 + L3 LINE CR1 423 505 -1072 1108 205 139 0 chr11 18544045 18544347 -132239206 + L1ME3 LINE L1 5466 5809 -353 1949 96 55 126 chr11 18544347 18544712 -132238841 + Charlie3 DNA MER1_type 1 2712 0 4817 229 81 29 chr11 18544796 18545133 -132238420 + L1MC4a LINE L1 6230 6548 -1260 456 19 0 0 chr11 18545133 18545186 -132238367 + (CA)n Simple_repeat Simple_repeat 2 54 0 4817 229 81 29 chr11 18545186 18546349 -132237204 + L1MC4a LINE L1 6548 7808 0 556 207 5 0 chr11 18546430 18546543 -132237010 + L1ME3 LINE L1 6054 6162 0 789 227 72 100 chr11 18546755 18547076 -132236477 + L1MC4 LINE L1 6458 6769 -1273 840 148 0 16 chr11 18547099 18547227 -132236326 - FLAM_C SINE Alu -17 126 1 1473 153 37 11 chr11 18547227 18547495 -132236058 + L1MC4 LINE L1 6776 7050 -992 1315 308 124 31 chr11 18547513 18548325 -132235228 + L3 LINE CR1 582 1469 -108 820 246 182 45 chr11 18548658 18549125 -132234428 + MLT1H LTR MaLR 6 536 -13 611 228 9 0 chr11 18549200 18549314 -132234239 - MER90 LTR ERV1 0 614 500 383 138 35 0 chr11 18549313 18549371 -132234182 + AluSp/q SINE Alu 206 265 -38 * 1942 108 18 11 chr11 18549382 18549668 -132233885 - MER90 LTR ERV1 -325 289 2 316 260 39 19 chr11 18549678 18549782 -132233771 - MIR SINE MIR -70 192 87 * 364 330 43 11 chr11 18549773 18549961 -132233592 + MIR SINE MIR 59 252 -10 315 233 58 0 chr11 18550866 18550952 -132232601 - MIR SINE MIR -109 153 63 286 221 39 13 chr11 18551085 18551162 -132232391 + L2 LINE L2 3227 3305 -8 21 36 0 0 chr11 18552153 18552181 -132231372 + AT_rich Low_complexity Low_complexity 1 28 0 847 243 173 26 chr11 18552181 18552638 -132230915 - L1ME4a LINE L1 -2 6119 5596 197 342 0 0 chr11 18552648 18552724 -132230829 + L3 LINE CR1 1084 1159 -418 267 297 171 17 chr11 18552804 18552979 -132230574 - MIR SINE MIR -56 206 5 192 77 0 0 chr11 18553042 18553068 -132230485 + (GGGAA)n Simple_repeat Simple_repeat 1 26 0 2467 193 38 8 chr11 18553139 18553616 -132229937 + MLT1E2 LTR MaLR 136 626 0 1030 180 0 14 chr11 18553618 18553835 -132229718 + L1ME2 LINE L1 5758 5971 -193 24 0 0 0 chr11 18554230 18554254 -132229299 + AT_rich Low_complexity Low_complexity 1 24 0 199 184 26 0 chr11 18554452 18554490 -132229063 - L2 LINE L2 -676 2638 2600 440 275 42 7 chr11 18554490 18554632 -132228921 + MIR SINE MIR 49 195 -67 2710 132 29 5 chr11 18554931 18555348 -132228205 + MSTA LTR MaLR 1 427 -1 598 260 35 0 chr11 18555458 18555631 -132227922 - MIR SINE MIR -1 261 83 364 202 73 81 chr11 18555773 18555797 -132227756 - L2 LINE L2 -4 3268 3245 1780 152 19 16 chr11 18555797 18556106 -132227447 + AluJo SINE Alu 1 310 -2 364 202 73 81 chr11 18556106 18556205 -132227348 - L2 LINE L2 -27 3245 3146 812 270 60 8 chr11 18556258 18556506 -132227047 + MIR SINE MIR 2 262 0 320 340 101 30 chr11 18557159 18557524 -132226029 + L2 LINE L2 2366 2756 -558 203 318 45 9 chr11 18558014 18558124 -132225429 + MIR SINE MIR 93 206 -56 224 341 47 0 chr11 18559172 18559257 -132224296 + MIR SINE MIR 72 160 -102 206 240 0 150 chr11 18561905 18561951 -132221602 + MIR3 SINE MIR 109 134 -74 207 0 0 0 chr11 18561951 18561974 -132221579 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 206 240 0 150 chr11 18561974 18562027 -132221526 + MIR3 SINE MIR 134 193 -15 182 390 11 0 chr11 18562112 18562207 -132221346 + L2 LINE L2 2968 3063 -209 180 0 0 0 chr11 18563290 18563310 -132220243 + (A)n Simple_repeat Simple_repeat 1 20 0 474 310 35 0 chr11 18563358 18563503 -132220050 + MIR3 SINE MIR 54 203 -5 535 328 98 60 chr11 18564102 18564605 -132218948 + L2 LINE L2 2535 3054 -218 354 292 31 39 chr11 18565262 18565392 -132218161 + MIR SINE MIR 64 192 -70 216 0 0 0 chr11 18566297 18566321 -132217232 + (CA)n Simple_repeat Simple_repeat 2 25 0 192 77 0 0 chr11 18566321 18566347 -132217206 + (TC)n Simple_repeat Simple_repeat 1 26 0 1640 181 17 35 chr11 18566393 18566680 -132216873 - AluJo SINE Alu -30 282 1 204 40 0 0 chr11 18566759 18566784 -132216769 + (TTCA)n Simple_repeat Simple_repeat 2 26 0 246 196 0 0 chr11 18567144 18567190 -132216363 - L2 LINE L2 -3 3310 3265 506 257 66 7 chr11 18567223 18567375 -132216178 - MIR SINE MIR -6 256 96 292 100 62 0 chr11 18567445 18567525 -132216028 + (TA)n Simple_repeat Simple_repeat 1 85 0 300 217 29 0 chr11 18567525 18567594 -132215959 - L1MA10 LINE L1 -32 6302 6232 1845 157 18 0 chr11 18567630 18567910 -132215643 - AluJb SINE Alu -23 289 5 284 250 29 0 chr11 18567914 18567982 -132215571 - L1MA10 LINE L1 -90 6244 6175 666 210 82 36 chr11 18568473 18568668 -132214885 + L1MD3 LINE L1 7784 7987 -8 434 256 71 18 chr11 18568696 18568860 -132214693 - MIR SINE MIR -27 235 65 334 264 0 50 chr11 18568986 18569107 -132214446 + MIR SINE MIR 93 207 -55 418 306 109 22 chr11 18569941 18570391 -132213162 + L2 LINE L2 2553 3055 -217 431 305 0 23 chr11 18570398 18570529 -132213024 - MER5B DNA MER1_type -3 175 48 901 184 6 6 chr11 18570546 18570709 -132212844 - FRAM SINE Alu -3 163 1 189 0 0 0 chr11 18570713 18570734 -132212819 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 189 262 0 0 chr11 18570760 18570802 -132212751 - MER5B DNA MER1_type -136 42 1 528 257 153 0 chr11 18570915 18571137 -132212416 - L2 LINE L2 -20 3293 3038 255 103 0 0 chr11 18571272 18571311 -132212242 + (TGAA)n Simple_repeat Simple_repeat 4 42 0 320 281 0 34 chr11 18571311 18571400 -132212153 + L2 LINE L2 3186 3271 -1 390 310 63 11 chr11 18571455 18571629 -132211924 - MIR3 SINE MIR -2 206 24 21 57 0 0 chr11 18572469 18572504 -132211049 + AT_rich Low_complexity Low_complexity 1 35 0 226 179 192 26 chr11 18572604 18572682 -132210871 + MER5A DNA MER1_type 75 165 -24 432 243 37 0 chr11 18572718 18572825 -132210728 + MIR SINE MIR 152 262 0 703 197 9 136 chr11 18572988 18573056 -132210497 + MER5A DNA MER1_type 1 76 -113 4631 99 3 2 chr11 18573056 18573699 -132209854 + L1PB1 LINE L1 5506 6149 -2 703 197 9 136 chr11 18573699 18573843 -132209710 + MER5A DNA MER1_type 76 186 -3 479 210 252 0 chr11 18573863 18574006 -132209547 + MER5A DNA MER1_type 10 188 -1 491 245 168 0 chr11 18574078 18574274 -132209279 - MIR SINE MIR -14 248 20 208 213 66 16 chr11 18574627 18574688 -132208865 - L2 LINE L2 0 3272 3209 216 67 0 0 chr11 18574748 18574778 -132208775 + (CA)n Simple_repeat Simple_repeat 2 31 0 198 103 0 0 chr11 18574778 18574807 -132208746 + (TC)n Simple_repeat Simple_repeat 2 30 0 231 349 90 24 chr11 18574814 18574980 -132208573 - L2 LINE L2 -181 3091 2915 576 282 103 0 chr11 18575744 18575918 -132207635 + L2 LINE L2 2824 3015 -298 1002 92 0 0 chr11 18575946 18576076 -132207477 + AluSp/q SINE Alu 169 298 -15 2232 119 0 0 chr11 18576080 18576383 -132207170 + AluY SINE Alu 1 303 -8 411 192 88 93 chr11 18576419 18576612 -132206941 + L2 LINE L2 3103 3294 -19 344 283 8 33 chr11 18576619 18576739 -132206814 - MIR SINE MIR -112 150 34 314 326 0 0 chr11 18577489 18577578 -132205975 + MIR SINE MIR 168 256 -6 209 274 48 0 chr11 18577876 18577938 -132205615 - L2 LINE L2 -313 2959 2895 188 273 55 0 chr11 18579818 18579873 -132203680 - L2 LINE L2 -47 3225 3168 268 309 43 11 chr11 18579968 18580062 -132203491 + L2 LINE L2 3138 3234 -38 * 457 275 98 26 chr11 18580056 18580249 -132203304 + MIR SINE MIR 51 257 -5 289 316 154 29 chr11 18580362 18580746 -132202807 - L2 LINE L2 -181 3091 2642 204 298 0 0 chr11 18581537 18581584 -132201969 + polypurine Low_complexity Low_complexity 3 49 0 461 287 74 32 chr11 18581924 18582140 -132201413 + MIR SINE MIR 28 252 -10 247 224 0 0 chr11 18582122 18582171 -132201382 - L2 LINE L2 -4 3309 3261 * 241 316 0 13 chr11 18582926 18583002 -132200551 + L2 LINE L2 3234 3308 -5 544 325 11 26 chr11 18583597 18583788 -132199765 + MIR3 SINE MIR 4 191 -17 412 257 181 21 chr11 18583805 18583949 -132199604 + MER5A DNA MER1_type 23 189 0 394 237 193 0 chr11 18584611 18584725 -132198828 + L2 LINE L2 3137 3272 0 300 220 17 0 chr11 18585707 18585766 -132197787 - L2 LINE L2 0 3272 3213 374 298 218 16 chr11 18585863 18586115 -132197438 + L2 LINE L2 3010 3312 -1 669 269 114 9 chr11 18586155 18586374 -132197179 + MIR SINE MIR 11 252 -10 558 303 29 6 chr11 18586784 18586959 -132196594 + MIR3 SINE MIR 3 181 -27 186 315 83 65 chr11 18587594 18587702 -132195851 - L2 LINE L2 -16 3256 3147 1314 141 11 0 chr11 18587852 18588037 -132195516 + MER5A DNA MER1_type 3 189 0 582 66 13 0 chr11 18588220 18588296 -132195257 + L1PA5 LINE L1 6078 6154 0 551 210 46 22 chr11 18589550 18589710 -132193843 + MIR SINE MIR 20 180 -66 23 68 0 0 chr11 18590184 18590228 -132193325 + AT_rich Low_complexity Low_complexity 1 44 0 225 0 0 0 chr11 18591275 18591300 -132192253 + (TAAAA)n Simple_repeat Simple_repeat 1 25 0 984 192 77 34 chr11 18591340 18591574 -132191979 + AluJo SINE Alu 29 272 -40 194 0 0 37 chr11 18591574 18591601 -132191952 + (CAAAA)n Simple_repeat Simple_repeat 5 30 0 446 271 99 7 chr11 18591615 18591766 -132191787 - MIR3 SINE MIR 0 208 44 558 253 27 54 chr11 18591809 18591995 -132191558 - L2 LINE L2 0 3313 3133 360 312 0 0 chr11 18592383 18592476 -132191077 + MIR3 SINE MIR 82 174 -34 936 273 71 21 chr11 18592986 18593365 -132190188 + L1ME4a LINE L1 5582 5987 -134 1864 161 6 22 chr11 18593365 18593682 -132189871 + AluSx SINE Alu 1 312 0 936 273 71 21 chr11 18593682 18593738 -132189815 + L1ME4a LINE L1 5987 6039 -82 25 0 0 0 chr11 18593784 18593809 -132189744 + AT_rich Low_complexity Low_complexity 1 25 0 296 167 136 0 chr11 18593845 18593911 -132189642 + L3 LINE CR1 1364 1438 -139 407 239 11 11 chr11 18594519 18594607 -132188946 - MIR SINE MIR -94 114 27 918 152 0 0 chr11 18596716 18596854 -132186699 - FRAM SINE Alu -39 137 1 252 276 40 81 chr11 18597115 18597289 -132186264 - L1MC4 LINE L1 -19 8023 7857 1172 73 6 18 chr11 18597319 18597483 -132186070 - L1MB3 LINE L1 -2 6181 6020 3921 136 16 11 chr11 18597487 18598133 -132185420 - L1MB3 LINE L1 -254 5917 5269 * 5888 233 54 24 chr11 18598121 18599902 -132183651 - L1MB3 LINE L1 -1391 4755 2922 1302 258 74 13 chr11 18599898 18600031 -132183522 - L1MC4 LINE L1 0 8042 7918 * 2290 109 0 0 chr11 18600031 18600342 -132183211 - AluY SINE Alu 0 311 1 1302 258 74 13 chr11 18600342 18600670 -132182883 - L1MC4 LINE L1 -124 7918 7553 695 176 24 0 chr11 18600671 18600796 -132182757 - L1ME LINE L1 -5937 133 6 1132 190 45 0 chr11 18601500 18601700 -132181853 - MER3 DNA MER1_type 0 209 1 794 103 9 0 chr11 18601805 18601912 -132181641 + AluSp SINE Alu 26 133 -180 1267 113 0 11 chr11 18601935 18602121 -132181432 + AluSq SINE Alu 127 310 -3 408 272 0 10 chr11 18602217 18602320 -132181233 - MIR SINE MIR -60 148 47 527 355 50 0 chr11 18602327 18602527 -132181026 + MIR SINE MIR 23 232 -30 251 357 45 9 chr11 18603244 18603356 -132180197 - L2 LINE L2 -1 3271 3156 546 303 63 6 chr11 18603834 18604009 -132179544 + MIR SINE MIR 64 248 -14 1274 173 148 0 chr11 18604063 18604300 -132179253 - AluSg SINE Alu -6 304 33 247 262 2 17 chr11 18604438 18604521 -132179032 - MIR SINE MIR -66 142 73 225 323 152 26 chr11 18606023 18606267 -132177286 - L2 LINE L2 -261 3011 2739 515 231 77 8 chr11 18606277 18606394 -132177159 - L2 LINE L2 0 3272 3148 230 283 38 75 chr11 18606453 18606559 -132176994 + L2 LINE L2 3168 3269 -3 289 374 26 53 chr11 18606575 18606765 -132176788 - L2 LINE L2 -571 2743 2559 224 368 32 0 chr11 18607458 18607553 -132176000 - MIR SINE MIR -65 143 46 348 250 105 17 chr11 18607817 18607957 -132175596 + MIR3 SINE MIR 11 163 -62 244 256 144 0 chr11 18608327 18608417 -132175136 + L2 LINE L2 3211 3313 0 412 333 80 33 chr11 18608556 18608979 -132174574 + L2 LINE L2 1528 1970 -1344 584 302 45 6 chr11 18609761 18609940 -132173613 - L2 LINE L2 0 3313 3128 283 238 21 119 chr11 18610957 18611100 -132172453 + MIR SINE MIR 79 207 -55 231 327 112 74 chr11 18611233 18611545 -132172008 + L2 LINE L2 2942 3265 -7 408 309 75 32 chr11 18612477 18612665 -132170888 + MIR SINE MIR 52 247 -15 311 319 156 22 chr11 18613700 18613976 -132169577 + L1ME LINE L1 5522 5834 -287 2351 93 0 28 chr11 18614965 18615286 -132168267 - AluSx SINE Alu 0 312 1 304 269 120 19 chr11 18615435 18615543 -132168010 + L2 LINE L2 3189 3307 -6 505 216 52 9 chr11 18615907 18616023 -132167530 - MIR SINE MIR -122 140 20 284 350 81 0 chr11 18617044 18617167 -132166386 + L2 LINE L2 2929 3061 -211 303 250 62 12 chr11 18617222 18617302 -132166251 - MIR3 SINE MIR -46 162 79 193 189 113 0 chr11 18617785 18617838 -132165715 - MIR SINE MIR -46 216 158 406 300 79 49 chr11 18618013 18618254 -132165299 - MIR SINE MIR -6 256 2 2406 94 0 0 chr11 18619017 18619324 -132164229 + AluSx SINE Alu 1 307 -5 279 0 0 0 chr11 18619482 18619513 -132164040 + (A)n Simple_repeat Simple_repeat 1 31 0 2029 142 7 0 chr11 18619513 18619801 -132163752 - AluSx SINE Alu -21 291 2 378 198 188 0 chr11 18619922 18620018 -132163535 - MIR SINE MIR -78 184 71 217 336 61 30 chr11 18620653 18620784 -132162769 + L3 LINE CR1 1441 1575 -2 386 286 158 41 chr11 18621111 18621170 -132162383 + L2 LINE L2 2875 2926 -387 2484 83 61 22 chr11 18621170 18621531 -132162022 + THE1C LTR MaLR 1 375 0 386 286 158 41 chr11 18621531 18621863 -132161690 + L2 LINE L2 2926 3312 -1 310 311 113 0 chr11 18621935 18622041 -132161512 + MIR SINE MIR 67 184 -78 450 279 51 76 chr11 18622418 18622615 -132160938 + MIR3 SINE MIR 15 206 -2 598 214 121 12 chr11 18622970 18623143 -132160410 - MIR SINE MIR -13 249 58 582 265 50 15 chr11 18623185 18623385 -132160168 - MIR SINE MIR -48 214 8 249 253 94 137 chr11 18623914 18624309 -132159244 + L2 LINE L2 2886 3263 -9 716 247 25 43 chr11 18624459 18624548 -132159005 - L2 LINE L2 -8 3305 3216 1471 177 3 63 chr11 18624548 18624848 -132158705 + AluJo SINE Alu 26 307 -5 716 247 25 43 chr11 18624848 18624993 -132158560 - L2 LINE L2 -97 3216 3075 514 274 44 0 chr11 18625683 18625818 -132157735 - MIR3 SINE MIR -52 156 16 507 300 29 29 chr11 18626001 18626171 -132157382 - MIR3 SINE MIR -11 197 28 15206 105 57 19 chr11 18626205 18627030 -132156523 + Tigger1 DNA MER2_type 24 816 -1602 2226 119 0 3 chr11 18627030 18627340 -132156213 + AluSg SINE Alu 1 309 -1 15206 105 57 19 chr11 18627340 18628822 -132154731 + Tigger1 DNA MER2_type 816 2418 0 398 209 77 53 chr11 18630737 18630895 -132152658 + MIR SINE MIR 38 203 -5 331 260 99 20 chr11 18631326 18631469 -132152084 + MIR SINE MIR 97 255 -7 383 264 121 17 chr11 18632126 18632273 -132151280 - MIR SINE MIR -61 147 14 2046 106 3 48 chr11 18632404 18632715 -132150838 - AluSg SINE Alu -13 297 1 264 333 59 0 chr11 18632764 18632866 -132150687 + L3 LINE CR1 163 270 -1307 470 282 213 29 chr11 18633252 18633529 -132150024 - L2 LINE L2 -60 3253 2926 2022 193 28 6 chr11 18633725 18634082 -132149471 + MLT1A1 LTR MaLR 1 365 0 404 337 60 20 chr11 18634165 18634364 -132149189 + MIR SINE MIR 50 256 -6 449 277 14 21 chr11 18634802 18634943 -132148610 + MIR3 SINE MIR 67 206 -2 234 248 155 8 chr11 18635596 18635725 -132147828 + L2 LINE L2 3107 3254 -18 301 333 17 17 chr11 18635855 18635972 -132147581 + MIR3 SINE MIR 83 199 -9 381 289 70 28 chr11 18636299 18636441 -132147112 - MIR3 SINE MIR -25 183 36 672 251 194 16 chr11 18636609 18636975 -132146578 - L1ME4a LINE L1 -41 6080 5650 256 248 89 10 chr11 18636995 18637096 -132146457 - MIR3 SINE MIR -13 195 87 1981 141 0 13 chr11 18637916 18638220 -132145333 - AluJo SINE Alu -12 300 1 660 246 91 32 chr11 18638322 18638509 -132145044 + MIR3 SINE MIR 9 206 -2 265 232 0 18 chr11 18639062 18639118 -132144435 + MIR SINE MIR 98 152 -56 308 252 122 38 chr11 18639597 18639728 -132143825 - MIR SINE MIR -30 232 91 690 307 91 57 chr11 18639737 18640290 -132143263 - L2 LINE L2 -74 3239 2656 2756 139 24 2 chr11 18640290 18640707 -132142846 - MSTA LTR MaLR -2 426 1 690 307 91 57 chr11 18640707 18640818 -132142735 - L2 LINE L2 -657 2656 2550 350 330 34 17 chr11 18640797 18640915 -132142638 - MIR SINE MIR -137 125 6 * 591 251 89 22 chr11 18640917 18641096 -132142457 - L2 LINE L2 0 3313 3123 350 246 43 65 chr11 18641389 18641527 -132142026 - MIR SINE MIR -55 207 73 802 180 8 0 chr11 18641967 18642095 -132141458 - MER20 DNA MER1_type 0 219 91 223 333 0 0 chr11 18643002 18643056 -132140497 + L2 LINE L2 3133 3186 -86 274 291 43 77 chr11 18643418 18643535 -132140018 - L2 LINE L2 -49 3223 3111 209 162 0 0 chr11 18645135 18645172 -132138381 - L2 LINE L2 -5 3308 3272 593 211 43 56 chr11 18645426 18645587 -132137966 + MIR3 SINE MIR 1 159 -49 237 188 175 0 chr11 18645603 18645676 -132137877 - MER102a DNA MER1_type -38 292 220 1238 152 57 46 chr11 18645805 18646068 -132137485 + MER33 DNA MER1_type 1 266 -58 277 370 20 0 chr11 18646099 18646199 -132137354 - MIR SINE MIR -73 135 34 482 273 33 66 chr11 18646307 18646490 -132137063 + MIR3 SINE MIR 29 205 -3 1913 108 3 76 chr11 18646889 18647205 -132136348 - AluSx SINE Alu -18 294 2 260 156 0 0 chr11 18647261 18647306 -132136247 + L1MB8 LINE L1 6085 6129 -49 30 83 0 0 chr11 18647327 18647399 -132136154 + AT_rich Low_complexity Low_complexity 1 72 0 252 382 32 0 chr11 18647583 18647706 -132135847 + MIR3 SINE MIR 66 192 -16 357 203 47 23 chr11 18648376 18648504 -132135049 + (TAGA)n Simple_repeat Simple_repeat 2 132 0 288 253 313 3 chr11 18648820 18648972 -132134581 - MIR SINE MIR -56 206 25 945 246 76 38 chr11 18649280 18649568 -132133985 + L1MC4 LINE L1 6451 6749 -1293 229 360 149 43 chr11 18650119 18650339 -132133214 - L2 LINE L2 -12 3260 2992 2284 54 0 7 chr11 18650339 18650619 -132132934 + AluY SINE Alu 31 308 -3 229 360 149 43 chr11 18650619 18650726 -132132827 - L2 LINE L2 -280 2992 2898 224 57 0 29 chr11 18651202 18651237 -132132316 + (GA)n Simple_repeat Simple_repeat 1 34 0 499 335 12 12 chr11 18652365 18652535 -132131018 - MIR3 SINE MIR -22 186 17 4782 145 45 50 chr11 18652893 18653066 -132130487 + L1MB3 LINE L1 5154 5326 -857 1571 173 35 0 chr11 18653066 18653326 -132130227 + AluJb SINE Alu 24 292 -20 4782 145 45 50 chr11 18653326 18654176 -132129377 + L1MB3 LINE L1 5326 6183 0 1557 206 0 17 chr11 18654249 18654541 -132129012 + AluJo SINE Alu 1 287 -25 356 243 9 0 chr11 18654544 18654655 -132128898 + (TATATG)n Simple_repeat Simple_repeat 2 113 0 1442 224 20 66 chr11 18654658 18655065 -132128488 + MLT1B LTR MaLR 2 389 -1 2741 147 31 2 chr11 18655065 18655513 -132128040 + L1MD1 LINE L1 5777 6237 -5 482 286 97 19 chr11 18655864 18656070 -132127483 + MIR SINE MIR 20 241 -21 2033 145 0 19 chr11 18656252 18656569 -132126984 + AluJo SINE Alu 1 311 -1 193 216 0 0 chr11 18656867 18656904 -132126649 - L3 LINE CR1 -15 1562 1526 851 203 61 0 chr11 18656904 18657067 -132126486 - MER58B DNA MER1_type 0 341 169 437 223 143 30 chr11 18657089 18657313 -132126240 - L3 LINE CR1 -44 1533 1221 1855 169 205 25 chr11 18657313 18657791 -132125762 + MLT1F1 LTR MaLR 1 564 -3 239 254 105 26 chr11 18657796 18657910 -132125643 - L3 LINE CR1 -354 1223 1101 228 270 87 78 chr11 18657940 18658055 -132125498 + L2 LINE L2 3106 3221 -51 428 293 26 0 chr11 18658060 18658176 -132125377 - L3 LINE CR1 -489 1088 970 185 315 21 77 chr11 18658305 18658448 -132125105 + L2 LINE L2 2545 2679 -635 295 291 87 115 chr11 18658461 18658921 -132124632 + L2 LINE L2 2826 3272 0 737 239 17 0 chr11 18659467 18659639 -132123914 + MER33 DNA MER1_type 1 165 -99 1252 103 6 0 chr11 18659639 18659813 -132123740 + AluSg/x SINE Alu 132 306 -6 1168 174 88 3 chr11 18659826 18660057 -132123496 + L1MB7 LINE L1 5925 6173 -11 538 120 90 0 chr11 18660057 18660157 -132123396 + MER33 DNA MER1_type 255 363 0 186 333 52 10 chr11 18661414 18661510 -132122043 - L2 LINE L2 -235 3037 2938 240 354 122 7 chr11 18662071 18662218 -132121335 - L3b LINE CR1 -6 1577 1414 2004 127 0 53 chr11 18662239 18662562 -132120991 - AluSx SINE Alu -6 306 1 685 237 163 5 chr11 18663098 18663153 -132120400 - MIR SINE MIR -9 253 208 881 189 110 68 chr11 18663153 18663417 -132120136 - ORSL DNA AcHobo 0 275 1 685 237 163 5 chr11 18663417 18663576 -132119977 - MIR SINE MIR -54 208 5 402 200 76 90 chr11 18663734 18663879 -132119674 + MIR3 SINE MIR 64 206 -2 21 0 0 0 chr11 18664295 18664316 -132119237 + AT_rich Low_complexity Low_complexity 1 21 0 227 312 39 13 chr11 18665677 18665754 -132117799 + MIR3 SINE MIR 130 208 0 862 195 85 9 chr11 18665833 18666107 -132117446 - MER46C DNA MER2_type -2 336 1 261 57 0 0 chr11 18666264 18666299 -132117254 + (CATA)n Simple_repeat Simple_repeat 2 36 0 492 159 93 0 chr11 18666445 18666552 -132117001 - MIR SINE MIR -62 200 84 627 233 140 26 chr11 18666679 18666907 -132116646 + L2 LINE L2 3057 3310 -3 423 98 0 0 chr11 18667204 18667265 -132116288 + (CA)n Simple_repeat Simple_repeat 1 61 0 2036 148 28 60 chr11 18667289 18667689 -132115864 + MLT1B LTR MaLR 4 390 0 420 280 106 32 chr11 18668183 18668372 -132115181 - L2 LINE L2 -1 3312 3110 23 0 0 0 chr11 18669059 18669082 -132114471 + GC_rich Low_complexity Low_complexity 1 23 0 498 122 0 0 chr11 18671324 18671422 -132112131 + (GA)n Simple_repeat Simple_repeat 1 98 0 1092 136 0 6 chr11 18671944 18672113 -132111440 - AluJb SINE Alu -8 304 137 214 214 71 0 chr11 18672117 18672173 -132111380 - MIR SINE MIR -115 147 88 269 287 70 38 chr11 18672173 18672330 -132111223 + L1ME LINE L1 1 162 -5908 2769 137 99 29 chr11 18672901 18673466 -132110087 + MER4B LTR ERV1 1 779 0 592 113 0 2 chr11 18674046 18674293 -132109260 + AluSx SINE Alu 1 293 -16 2569 68 0 0 chr11 18674485 18674793 -132108760 + AluY SINE Alu 1 308 -3 290 372 63 17 chr11 18675616 18675855 -132107698 - L2 LINE L2 -989 2325 2076 180 77 0 0 chr11 18677716 18677742 -132105811 + (CA)n Simple_repeat Simple_repeat 2 27 0 183 376 65 0 chr11 18678236 18678329 -132105224 + L2 LINE L2 2566 2664 -650 2263 187 86 26 chr11 18680221 18680804 -132102749 - Charlie1 DNA MER1_type 0 2761 2144 412 208 13 0 chr11 18680795 18680872 -132102681 - Charlie1 DNA MER1_type -2682 79 2 * 456 300 216 30 chr11 18680885 18681218 -132102335 + L2 LINE L2 2845 3239 -33 562 139 0 40 chr11 18681407 18681551 -132102002 - AluSg/x SINE Alu 0 354 215 964 261 0 72 chr11 18682060 18682378 -132101175 + L2 LINE L2 3001 3295 -18 338 247 0 75 chr11 18682381 18682474 -132101079 - MIR SINE MIR -1 261 176 231 36 0 0 chr11 18682478 18682506 -132101047 + (A)n Simple_repeat Simple_repeat 1 28 0 394 296 74 29 chr11 18682851 18683077 -132100476 - MIR SINE MIR -6 256 20 1091 208 10 10 chr11 18683423 18683630 -132099923 + MER3 DNA MER1_type 3 209 0 829 329 176 10 chr11 18684357 18684856 -132098697 - L3 LINE CR1 -2 1575 994 2069 119 0 50 chr11 18684869 18685189 -132098364 + AluSq SINE Alu 2 305 -8 22 35 0 0 chr11 18686034 18686063 -132097490 + AT_rich Low_complexity Low_complexity 1 29 0 1694 174 0 41 chr11 18686212 18686528 -132097025 + AluJo SINE Alu 1 303 -9 205 293 52 0 chr11 18686790 18686848 -132096705 - L2 LINE L2 -219 3053 2993 243 0 0 0 chr11 18686861 18686888 -132096665 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 185 324 33 71 chr11 18686996 18687041 -132096512 - L2 LINE L2 -527 2787 2742 2686 153 51 11 chr11 18687041 18687570 -132095983 - L1MB7 LINE L1 0 6184 5635 185 324 33 71 chr11 18687570 18687706 -132095847 - L2 LINE L2 -572 2742 2613 314 330 138 16 chr11 18687770 18687958 -132095595 + L2 LINE L2 2874 3084 -188 2492 69 0 3 chr11 18688623 18688929 -132094624 - AluY SINE Alu -6 305 1 25 31 0 0 chr11 18689018 18689050 -132094503 + AT_rich Low_complexity Low_complexity 1 32 0 2134 135 0 0 chr11 18689062 18689350 -132094203 + AluSx SINE Alu 9 296 -16 180 0 0 0 chr11 18689468 18689488 -132094065 + (TAAAA)n Simple_repeat Simple_repeat 1 20 0 449 321 33 118 chr11 18689876 18690300 -132093253 + L2 LINE L2 2876 3263 -9 388 289 74 7 chr11 18690308 18690443 -132093110 - MIR3 SINE MIR -46 162 19 826 148 82 6 chr11 18690981 18691223 -132092330 - MER1B DNA MER1_type -15 324 31 1841 164 16 10 chr11 18691437 18691814 -132091739 - AluJb SINE Alu 0 379 1 219 229 0 21 chr11 18692865 18692913 -132090640 + MIR3 SINE MIR 123 169 -39 2136 131 3 0 chr11 18693165 18693462 -132090091 + AluJo SINE Alu 1 298 -14 646 243 15 0 chr11 18693887 18694023 -132089530 - MIR SINE MIR -120 142 5 752 260 18 41 chr11 18694028 18694370 -132089183 + HAL1 LINE L1 2067 2400 -107 23 0 0 0 chr11 18694868 18694891 -132088662 + AT_rich Low_complexity Low_complexity 1 23 0 419 266 104 66 chr11 18694949 18695238 -132088315 + HAL1 LINE L1 2164 2463 -44 912 294 36 0 chr11 18695312 18695560 -132087993 - MIR SINE MIR -4 258 2 562 269 48 48 chr11 18695701 18695887 -132087666 + L2 LINE L2 3115 3300 -13 324 275 42 21 chr11 18695898 18696040 -132087513 - L1ME LINE L1 -455 5666 5522 29 84 0 0 chr11 18696158 18696229 -132087324 + AT_rich Low_complexity Low_complexity 1 71 0 1010 206 5 21 chr11 18696469 18696663 -132086890 - AluJo SINE Alu -30 282 92 235 250 113 25 chr11 18697505 18697585 -132085968 + MIR SINE MIR 28 114 -148 341 241 16 155 chr11 18698597 18698784 -132084769 + MIR SINE MIR 92 252 -10 2000 150 7 0 chr11 18699410 18699716 -132083837 + AluSx SINE Alu 1 308 -4 1247 134 0 63 chr11 18699745 18699968 -132083585 + AluJo SINE Alu 87 295 -17 2198 72 0 7 chr11 18700239 18700518 -132083035 + AluSc SINE Alu 12 288 -21 267 54 0 0 chr11 18700838 18700875 -132082678 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 251 252 171 24 chr11 18702008 18702131 -132081422 + MIR SINE MIR 111 251 -11 191 211 0 0 chr11 18702098 18702136 -132081417 + L2 LINE L2 3223 3260 -12 * 1364 191 99 10 chr11 18703050 18703408 -132080145 - L1ME1 LINE L1 -5 6161 5781 359 298 94 26 chr11 18703430 18703621 -132079932 - MIR SINE MIR -54 208 5 7238 118 23 6 chr11 18703681 18705898 -132077655 + L1MA2 LINE L1 4048 6301 -3 24 0 0 0 chr11 18705898 18705922 -132077631 + AT_rich Low_complexity Low_complexity 1 24 0 1294 215 128 9 chr11 18706089 18706433 -132077120 - MLT1D LTR MaLR -120 385 1 530 329 111 63 chr11 18706652 18706974 -132076579 + L2 LINE L2 2026 2331 -941 3344 189 9 15 chr11 18706974 18707660 -132075893 + L1MB5 LINE L1 5485 6166 -8 530 329 111 63 chr11 18707660 18708296 -132075257 + L2 LINE L2 2331 3037 -235 232 222 74 0 chr11 18708485 18708539 -132075014 + L2 LINE L2 3207 3264 -8 250 330 59 15 chr11 18708633 18708836 -132074717 - L1ME1 LINE L1 -2223 5585 5374 884 228 55 119 chr11 18709133 18709229 -132074324 - L2 LINE L2 -655 2659 2558 293 29 0 0 chr11 18709229 18709264 -132074289 + U2 snRNA snRNA 2 36 -152 884 228 55 119 chr11 18709264 18709620 -132073933 - L2 LINE L2 -756 2558 2204 1657 155 43 7 chr11 18709630 18709908 -132073645 + AluJo SINE Alu 1 288 -24 28 0 0 0 chr11 18709908 18709936 -132073617 + AT_rich Low_complexity Low_complexity 1 28 0 664 100 41 0 chr11 18709936 18710159 -132073394 + (TA)n Simple_repeat Simple_repeat 1 232 0 205 151 94 19 chr11 18710487 18710540 -132073013 + MIR SINE MIR 44 100 -108 1098 152 0 6 chr11 18711131 18711309 -132072244 - AluSg/x SINE Alu -12 300 124 357 351 95 12 chr11 18711330 18711498 -132072055 - L2 LINE L2 -3 3269 3088 387 320 23 8 chr11 18711635 18711763 -132071790 + MIR3 SINE MIR 3 132 -76 573 306 56 23 chr11 18712484 18712700 -132070853 - MIR SINE MIR -12 250 28 704 322 63 40 chr11 18713007 18713451 -132070102 - MLT1K LTR MaLR -111 477 24 318 91 0 18 chr11 18713469 18713524 -132070029 + L1MA2 LINE L1 6097 6150 -154 290 118 0 0 chr11 18713533 18713584 -132069969 + L1MA2 LINE L1 6098 6148 -156 1346 79 5 46 chr11 18713595 18713646 -132069907 + L1MA2 LINE L1 6098 6150 -154 2208 120 0 7 chr11 18713646 18713945 -132069608 + AluSx SINE Alu 1 297 -15 1346 79 5 46 chr11 18713945 18714109 -132069444 + L1MA2 LINE L1 6150 6304 0 231 245 0 0 chr11 18714269 18714318 -132069235 + L2 LINE L2 3264 3312 -1 7686 21 0 0 chr11 18715080 18716055 -132067498 - L1PA3 LINE L1 -3 6152 5177 11502 28 1 25 chr11 18716055 18717559 -132065994 + L1PA3 LINE L1 3714 5180 -966 859 251 150 5 chr11 18717590 18717797 -132065756 - MIR SINE MIR -21 241 5 308 236 60 121 chr11 18718024 18718223 -132065330 + MLT1J2 LTR MaLR 264 450 0 559 247 28 72 chr11 18718585 18718945 -132064608 + L1M4 LINE L1 3656 3999 -2147 481 180 0 34 chr11 18718958 18719047 -132064506 - AluJ/FRAM SINE Alu -13 299 214 1893 145 0 42 chr11 18720504 18720640 -132062913 + AluJb SINE Alu 1 141 -171 2333 109 0 3 chr11 18720640 18720952 -132062601 + AluSq SINE Alu 1 311 -2 1893 145 0 42 chr11 18720952 18721125 -132062428 + AluJb SINE Alu 141 297 -15 434 205 7 80 chr11 18721412 18721563 -132061990 - MER69A DNA AcHobo -1 176 37 836 207 6 6 chr11 18721566 18721740 -132061813 + MER5B DNA MER1_type 4 177 -1 253 264 0 0 chr11 18721800 18721853 -132061700 - L2 LINE L2 0 3272 3220 * 317 241 0 58 chr11 18721840 18721927 -132061626 + L2 LINE L2 3191 3272 0 1131 140 0 0 chr11 18722540 18722704 -132060849 + AluSg/x SINE Alu 134 297 -15 22 0 0 0 chr11 18722714 18722736 -132060817 + AT_rich Low_complexity Low_complexity 1 22 0 195 263 11 84 chr11 18723523 18723618 -132059935 + L2 LINE L2 3185 3272 0 2287 90 0 13 chr11 18726092 18726392 -132057161 + AluSx SINE Alu 1 296 -16 315 264 73 36 chr11 18726736 18726846 -132056707 - MIR SINE MIR -66 196 83 387 335 145 11 chr11 18727354 18727623 -132055930 + L2 LINE L2 2228 2532 -782 282 204 97 32 chr11 18728199 18728292 -132055261 - MLT1F LTR MaLR -20 522 424 915 185 0 13 chr11 18728329 18728486 -132055067 - FRAM SINE Alu -21 155 1 326 196 2 12 chr11 18728614 18728696 -132054857 - MLT1H LTR MaLR -264 162 64 365 211 92 0 chr11 18728885 18728961 -132054592 + L2 LINE L2 3214 3296 -17 587 303 70 8 chr11 18729226 18729467 -132054086 + MIR SINE MIR 3 258 -4 1657 167 38 7 chr11 18730510 18730632 -132052921 + AluJo SINE Alu 1 118 -184 2024 105 6 94 chr11 18730632 18730770 -132052783 + AluSx SINE Alu 1 150 -162 2357 113 0 0 chr11 18730770 18731080 -132052473 + AluSg SINE Alu 1 310 0 2024 105 6 94 chr11 18731080 18731283 -132052270 + AluSx SINE Alu 150 312 0 1657 167 38 7 chr11 18731283 18731453 -132052100 + AluJo SINE Alu 118 302 0 528 189 33 59 chr11 18731453 18731606 -132051947 - L1MC5 LINE L1 -82 7879 7731 563 170 0 38 chr11 18731662 18731768 -132051785 + FLAM_A SINE Alu 34 135 -7 266 0 0 29 chr11 18732379 18732414 -132051139 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2494 48 10 13 chr11 18732991 18733300 -132050253 + AluY SINE Alu 1 308 -3 2336 65 11 0 chr11 18734223 18734525 -132049028 + AluY SINE Alu 1 305 0 1776 138 3 21 chr11 18735414 18735696 -132047857 - L1PA16 LINE L1 -1 6165 5889 366 356 71 52 chr11 18736091 18736557 -132046996 + L2 LINE L2 2373 2847 -467 1946 144 3 0 chr11 18737058 18737342 -132046211 - AluJb SINE Alu -8 304 20 23 54 0 0 chr11 18737864 18737901 -132045652 + AT_rich Low_complexity Low_complexity 1 37 0 242 289 156 22 chr11 18738211 18738391 -132045162 - L2 LINE L2 -5 3308 3105 842 164 0 14 chr11 18738485 18738625 -132044928 + AluJb SINE Alu 1 138 -174 957 248 134 48 chr11 18738632 18739088 -132044465 + L2 LINE L2 2552 3044 -269 244 305 29 99 chr11 18739111 18739218 -132044335 + L1M4 LINE L1 3923 4036 -2110 2007 144 0 0 chr11 18739218 18739496 -132044057 - AluSx SINE Alu -34 278 1 244 305 29 99 chr11 18739496 18739660 -132043893 + L1M4 LINE L1 4036 4175 -1971 836 187 0 0 chr11 18739852 18739986 -132043567 + FRAM SINE Alu 18 151 -25 2144 131 0 6 chr11 18739996 18740309 -132043244 + AluSx SINE Alu 1 311 -1 533 217 112 20 chr11 18740864 18741016 -132042537 - L2 LINE L2 0 3313 3148 383 369 130 42 chr11 18741377 18741762 -132041791 - L2 LINE L2 -9 3263 2845 541 179 94 8 chr11 18741833 18741950 -132041603 - L1PA16 LINE L1 -4 6162 6036 270 365 0 0 chr11 18742060 18742145 -132041408 - L2 LINE L2 -644 2670 2586 189 228 88 0 chr11 18742285 18742342 -132041211 - L2 LINE L2 -899 2415 2354 1588 198 7 3 chr11 18743346 18743634 -132039919 + AluJo SINE Alu 1 289 -23 237 281 96 50 chr11 18744144 18744343 -132039210 - L1ME3A LINE L1 0 6170 5963 21 0 0 0 chr11 18744374 18744395 -132039158 + AT_rich Low_complexity Low_complexity 1 21 0 959 273 56 6 chr11 18744517 18744873 -132038680 - L1ME3A LINE L1 -266 5904 5531 21 57 0 0 chr11 18745778 18745813 -132037740 + AT_rich Low_complexity Low_complexity 1 35 0 2953 155 67 8 chr11 18746549 18747040 -132036513 + Tigger7 DNA MER2_type 3 522 -1965 527 148 45 0 chr11 18747039 18747127 -132036426 + Tigger7 DNA MER2_type 2396 2487 0 * 737 225 140 9 chr11 18747192 18747414 -132036139 - MIR SINE MIR -10 252 2 471 284 11 30 chr11 18747649 18747832 -132035721 + MER5A DNA MER1_type 1 178 0 1251 222 26 4 chr11 18747862 18748096 -132035457 - MER8 DNA MER2_type 0 239 1 586 231 66 0 chr11 18748526 18748647 -132034906 - MER5B DNA MER1_type -14 164 36 491 192 121 115 chr11 18748654 18748836 -132034717 + MER5A DNA MER1_type 7 189 0 296 298 138 0 chr11 18749139 18749233 -132034320 + MIR SINE MIR 3 109 -153 221 358 152 6 chr11 18749731 18749896 -132033657 + MIR3 SINE MIR 19 207 -1 43 0 0 0 chr11 18749896 18749939 -132033614 + AT_rich Low_complexity Low_complexity 1 43 0 1866 143 0 14 chr11 18749947 18750240 -132033313 + AluJb SINE Alu 13 301 -11 2178 110 3 7 chr11 18750592 18750901 -132032652 + AluSx SINE Alu 2 309 -3 1610 139 78 48 chr11 18751196 18751490 -132032063 + AluJb SINE Alu 2 304 -8 1995 138 0 7 chr11 18751500 18751798 -132031755 + AluJb SINE Alu 1 296 -16 22 0 0 0 chr11 18752093 18752115 -132031438 + AT_rich Low_complexity Low_complexity 1 22 0 785 261 51 13 chr11 18752510 18752744 -132030809 - MIR SINE MIR 0 262 20 808 136 13 71 chr11 18752745 18752900 -132030653 - FAM SINE Alu -20 165 20 553 266 124 38 chr11 18752961 18753228 -132030325 - L2 LINE L2 0 3313 3024 300 312 111 30 chr11 18753274 18753473 -132030080 - L2 LINE L2 -159 3113 2899 622 216 213 63 chr11 18753781 18754082 -132029471 + L1ME1 LINE L1 2589 2934 -3212 993 87 0 0 chr11 18754088 18754214 -132029339 + AluJb SINE Alu 4 129 -183 332 231 28 37 chr11 18754240 18754348 -132029205 + L1ME1 LINE L1 2946 3052 -3094 3281 201 36 47 chr11 18754353 18754915 -132028638 + L1ME1 LINE L1 4841 5407 -759 2393 112 27 32 chr11 18754915 18755290 -132028263 + THE1C LTR MaLR 3 375 0 3281 201 36 47 chr11 18755290 18755757 -132027796 + L1ME1 LINE L1 5407 6100 -66 1956 143 14 0 chr11 18755757 18756051 -132027502 + AluSx SINE Alu 1 298 -14 3281 201 36 47 chr11 18756051 18756113 -132027440 + L1ME1 LINE L1 6100 6161 -5 200 360 43 50 chr11 18756137 18756298 -132027255 - L2 LINE L2 -556 2758 2599 385 279 54 9 chr11 18756314 18756425 -132027128 + MIR SINE MIR 97 212 -50 4642 150 47 31 chr11 18757069 18757884 -132025669 + MER6 DNA MER2_type 37 864 -1 413 318 121 20 chr11 18758219 18758600 -132024953 - L2 LINE L2 -213 3059 2627 388 253 18 72 chr11 18758621 18758787 -132024766 - MIR SINE MIR -11 251 95 1830 117 20 30 chr11 18758810 18759109 -132024444 - AluJo SINE Alu -16 296 1 810 81 10 0 chr11 18760027 18760126 -132023427 - AluJ/FLAM SINE Alu -210 102 3 592 215 99 36 chr11 18761284 18761399 -132022154 - MER20B DNA MER1_type -50 733 627 2185 49 7 18 chr11 18761399 18761715 -132021838 - AluY SINE Alu 0 313 1 592 215 99 36 chr11 18761715 18761821 -132021732 - MER20B DNA MER1_type -156 627 497 2093 152 3 20 chr11 18761828 18762183 -132021370 - MER65C LTR ERV1 -1 460 112 787 169 0 16 chr11 18762185 18762309 -132021244 - FLAM_C SINE Alu -21 122 1 213 119 0 0 chr11 18762310 18762352 -132021201 + (TTTA)n Simple_repeat Simple_repeat 4 45 0 1882 61 16 8 chr11 18762353 18762598 -132020955 - AluY SINE Alu -26 285 39 21 57 0 0 chr11 18762727 18762762 -132020791 + AT_rich Low_complexity Low_complexity 1 35 0 1831 143 59 0 chr11 18762785 18763072 -132020481 + AluSx SINE Alu 1 304 -8 1837 159 0 14 chr11 18763422 18763733 -132019820 + AluJb SINE Alu 1 307 0 475 266 120 16 chr11 18764380 18764572 -132018981 + MIR SINE MIR 51 262 0 191 203 16 0 chr11 18765254 18765318 -132018235 + CT-rich Low_complexity Low_complexity 3 67 0 1661 189 54 3 chr11 18765320 18765496 -132018057 - AluJo SINE Alu 0 312 113 199 0 65 0 chr11 18765496 18765527 -132018026 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1661 189 54 3 chr11 18765527 18765647 -132017906 - AluJo SINE Alu -199 113 1 356 277 97 15 chr11 18765684 18765879 -132017674 - L1M4 LINE L1 -2610 3536 3326 301 266 80 62 chr11 18766105 18766218 -132017335 - L2 LINE L2 -8 3264 3150 225 316 71 10 chr11 18767521 18767619 -132015934 + MIR SINE MIR 118 221 -41 426 234 15 109 chr11 18768038 18768239 -132015314 - MER5A DNA MER1_type -1 188 7 207 69 0 0 chr11 18768418 18768447 -132015106 + (TC)n Simple_repeat Simple_repeat 2 30 0 2155 114 0 0 chr11 18768447 18768728 -132014825 - AluSx SINE Alu -31 281 1 310 242 233 41 chr11 18768927 18769022 -132014531 + MIR SINE MIR 2 77 -185 375 41 0 0 chr11 18769022 18769071 -132014482 + (TG)n Simple_repeat Simple_repeat 2 50 0 310 242 233 41 chr11 18769071 18769194 -132014359 + MIR SINE MIR 77 262 0 333 0 0 0 chr11 18769816 18769853 -132013700 + (CA)n Simple_repeat Simple_repeat 2 38 0 2745 143 26 5 chr11 18770508 18770927 -132012626 + MSTA LTR MaLR 1 428 0 1571 178 0 43 chr11 18770959 18771262 -132012291 + AluJo SINE Alu 13 302 -10 291 287 21 0 chr11 18771976 18772070 -132011483 + MIR SINE MIR 159 254 -8 2838 123 58 65 chr11 18772233 18772467 -132011086 + MER41C LTR ERV1 1 235 -319 2191 103 0 20 chr11 18772467 18772768 -132010785 + AluSg SINE Alu 1 295 -15 2838 123 58 65 chr11 18772768 18772813 -132010740 + MER41C LTR ERV1 235 279 -275 2196 126 7 0 chr11 18772813 18773123 -132010430 + AluSq SINE Alu 1 312 -1 2838 123 58 65 chr11 18773123 18773338 -132010215 + MER41C LTR ERV1 279 493 -61 10610 36 18 1 chr11 18773438 18775399 -132008154 + L1PA6 LINE L1 4178 6153 -1 12966 28 1 0 chr11 18775775 18777278 -132006275 + L1PA4 LINE L1 3622 5125 -1021 7898 30 5 5 chr11 18777378 18778392 -132005161 + L1PA4 LINE L1 5132 6147 -8 5945 238 11 24 chr11 18778423 18778795 -132004758 + L1 LINE L1 2254 2629 -3517 2046 132 3 3 chr11 18778795 18779106 -132004447 + AluSx SINE Alu 1 311 -1 5945 238 11 24 chr11 18779106 18780358 -132003195 + L1 LINE L1 2629 3857 -2289 199 305 102 23 chr11 18781151 18781279 -132002274 - MIR3 SINE MIR -62 146 9 330 282 83 26 chr11 18782293 18782449 -132001104 - MIR SINE MIR -70 192 28 194 363 12 0 chr11 18782942 18783022 -132000531 + L2 LINE L2 3179 3259 -54 210 329 42 54 chr11 18783030 18783197 -132000356 - MIR3 SINE MIR -37 171 7 341 325 115 24 chr11 18783262 18783514 -132000039 + MLT1J LTR MaLR 7 281 -230 1215 239 39 24 chr11 18783623 18783953 -131999600 + MER2 DNA MER2_type 2 336 -9 915 310 54 35 chr11 18784249 18784434 -131999119 + LTR33 LTR ERVL 31 211 -310 2650 139 31 10 chr11 18784434 18784852 -131998701 - MSTA LTR MaLR -1 427 1 915 310 54 35 chr11 18784852 18785127 -131998426 + LTR33 LTR ERVL 211 500 -21 2678 111 6 0 chr11 18786202 18786564 -131996989 - L1PB1 LINE L1 -2 6149 5786 532 267 9 8 chr11 18786565 18786756 -131996797 - L1PB1 LINE L1 -480 5694 5500 6690 178 10 11 chr11 18786963 18788749 -131994804 - L1P5 LINE L1 -557 5594 3814 1234 228 23 6 chr11 18790138 18790489 -131993064 + L1MB4 LINE L1 5824 6180 0 247 333 0 0 chr11 18791318 18791384 -131992169 + L2 LINE L2 3121 3186 -86 268 255 87 125 chr11 18792622 18792830 -131990723 - L2 LINE L2 -5 3267 3068 6559 220 16 23 chr11 18794098 18796039 -131987514 + L1M2 LINE L1 2504 4522 -2326 4583 50 10 0 chr11 18796145 18796723 -131986830 - L1PA4 LINE L1 -1 6154 5571 13344 74 4 8 chr11 18796723 18798575 -131984978 - L1P LINE L1 -4300 1846 1 9824 200 13 8 chr11 18798575 18801323 -131982230 + L1PB1 LINE L1 2875 5637 -514 2573 109 3 0 chr11 18801341 18801708 -131981845 + L1PB1 LINE L1 5782 6149 -2 658 289 124 38 chr11 18802770 18803028 -131980525 - LTR33 LTR ERVL -10 511 277 2343 153 36 14 chr11 18803028 18803447 -131980106 + MSTA LTR MaLR 1 428 0 658 289 124 38 chr11 18803447 18803631 -131979922 - LTR33 LTR ERVL -244 277 31 238 331 42 54 chr11 18804253 18804419 -131979134 + MIR3 SINE MIR 8 171 -37 287 388 20 10 chr11 18804431 18804529 -131979024 - L2 LINE L2 -40 3232 3134 323 366 57 0 chr11 18805007 18805182 -131978371 + MIR SINE MIR 15 199 -63 1103 229 35 9 chr11 18808372 18808713 -131974840 + L1MB4 LINE L1 5825 6174 -6 2043 114 7 17 chr11 18810023 18810060 -131973493 - AluSc SINE Alu -14 295 259 378 0 0 0 chr11 18810060 18810102 -131973451 + (TTTA)n Simple_repeat Simple_repeat 4 45 0 2043 114 7 17 chr11 18810102 18810362 -131973191 - AluSc SINE Alu -50 259 1 251 263 81 124 chr11 18811184 18811393 -131972160 - L2 LINE L2 -5 3267 3068 217 287 17 87 chr11 18813511 18813565 -131969988 + L2 LINE L2 631 674 -2640 2604 98 14 0 chr11 18813565 18813921 -131969632 - THE1B LTR MaLR -3 361 1 217 287 17 87 chr11 18813921 18813981 -131969572 + L2 LINE L2 674 737 -2577 1638 233 75 89 chr11 18813984 18814808 -131968745 - L1MD2 LINE L1 -13 6346 5534 326 226 59 0 chr11 18814837 18814939 -131968614 - L1MD2 LINE L1 -738 5428 5321 980 302 129 22 chr11 18814939 18815588 -131967965 + L2 LINE L2 1122 1840 -1474 198 0 0 0 chr11 18815736 18815758 -131967795 + (TA)n Simple_repeat Simple_repeat 2 23 0 201 259 0 0 chr11 18815918 18815976 -131967577 + (TA)n Simple_repeat Simple_repeat 2 59 0 2436 84 6 11 chr11 18816011 18816549 -131967004 - L1PA10 LINE L1 -1 6167 5520 2210 112 71 0 chr11 18817144 18817484 -131966069 - THE1B LTR MaLR 0 364 1 837 310 86 7 chr11 18817811 18818243 -131965310 - LTR33 LTR ERVL -16 505 40 1289 217 35 26 chr11 18818548 18818889 -131964664 - MER2 DNA MER2_type 0 344 1 272 300 0 0 chr11 18819091 18819171 -131964382 - MLT1J2 LTR MaLR -302 148 69 227 389 0 0 chr11 18819381 18819471 -131964082 + MIR3 SINE MIR 82 171 -37 1556 176 82 17 chr11 18819480 18819650 -131963903 - THE1C LTR MaLR 0 375 218 213 39 0 0 chr11 18819650 18819676 -131963877 + (GA)n Simple_repeat Simple_repeat 1 26 0 1556 176 82 17 chr11 18819676 18819857 -131963696 - THE1C LTR MaLR -157 218 1 278 289 24 24 chr11 18819859 18819942 -131963611 - L2 LINE L2 -52 3261 3179 273 302 111 35 chr11 18820568 18820740 -131962813 + MIR SINE MIR 15 199 -63 183 207 35 35 chr11 18821177 18821235 -131962318 + L3 LINE CR1 1355 1412 -165 230 314 29 0 chr11 18821357 18821427 -131962126 - L2 LINE L2 0 3313 3242 2345 189 40 7 chr11 18821445 18821889 -131961664 - MER66B LTR ERV1 -27 459 1 663 163 0 24 chr11 18821890 18822013 -131961540 - MER66B LTR ERV1 -366 120 1 249 303 34 11 chr11 18822384 18822473 -131961080 + MIR SINE MIR 98 188 -74 3576 130 25 11 chr11 18823792 18824429 -131959124 + Tigger3(Golem) DNA MER2_type 2379 3024 -5 29 28 0 0 chr11 18824810 18824846 -131958707 + AT_rich Low_complexity Low_complexity 1 36 0 248 268 86 129 chr11 18824949 18825158 -131958395 - L2 LINE L2 -5 3267 3068 206 238 0 125 chr11 18825543 18825623 -131957930 + MIR3 SINE MIR 4 73 -135 1565 35 5 5 chr11 18826395 18826596 -131956957 - L1PA5 LINE L1 -214 5940 5740 1424 63 11 11 chr11 18826596 18826784 -131956769 + L1PA5 LINE L1 5964 6154 0 29704 124 59 10 chr11 18827051 18831907 -131951646 + L1PB1 LINE L1 3 4622 -1529 189 0 0 0 chr11 18831907 18831928 -131951625 + (TAA)n Simple_repeat Simple_repeat 2 22 0 29704 124 59 10 chr11 18831928 18832567 -131950986 + L1PB1 LINE L1 4622 5229 -922 264 30 0 0 chr11 18832567 18832600 -131950953 + (CA)n Simple_repeat Simple_repeat 1 33 0 29704 124 59 10 chr11 18832600 18832960 -131950593 + L1PB1 LINE L1 5229 6151 0 406 224 0 54 chr11 18832960 18833107 -131950446 - L1MA7 LINE L1 -151 6140 6002 * 1819 249 49 51 chr11 18833105 18833577 -131949976 - L1M4 LINE L1 -2203 3943 3472 1998 94 86 0 chr11 18833577 18833844 -131949709 + AluSx SINE Alu 1 290 -22 1819 249 49 51 chr11 18833844 18834270 -131949283 - L1M4 LINE L1 -2674 3472 3047 761 273 33 38 chr11 18834279 18834681 -131948872 - L1M4 LINE L1 -2583 3563 3162 2379 57 0 60 chr11 18834681 18834997 -131948556 - AluY SINE Alu -14 297 1 761 273 33 38 chr11 18834997 18835045 -131948508 - L1M4 LINE L1 -2984 3162 3115 2914 212 53 2 chr11 18835046 18835663 -131947890 - MER44D DNA MER2_type 0 605 85 442 142 8 17 chr11 18835680 18835800 -131947753 - L1 LINE L1 -2923 3223 3105 * 4519 161 22 69 chr11 18835796 18836682 -131946871 + L1MA8 LINE L1 5227 6054 -237 2194 127 7 0 chr11 18836682 18836982 -131946571 - AluSx SINE Alu -10 302 1 4519 161 22 69 chr11 18836982 18837188 -131946365 + L1MA8 LINE L1 6054 6268 -23 1275 241 35 5 chr11 18837211 18837589 -131945964 - L1MC/D LINE L1 -542 5817 5429 * 1638 141 11 11 chr11 18837583 18837853 -131945700 - MLT1B LTR MaLR -120 270 1 2292 91 0 3 chr11 18839468 18839766 -131943787 + AluSq SINE Alu 1 297 -16 1696 113 12 0 chr11 18839768 18840008 -131943545 + AluSq SINE Alu 51 293 -20 209 196 0 0 chr11 18840207 18840253 -131943300 + T-rich Low_complexity Low_complexity 2 47 0 3000 104 97 30 chr11 18841086 18841127 -131942426 + L1PB1 LINE L1 5656 5693 -458 2214 112 3 0 chr11 18841127 18841422 -131942131 - AluSx SINE Alu -16 296 1 3000 104 97 30 chr11 18841422 18841843 -131941710 + L1PB1 LINE L1 5693 6149 -2 771 303 111 20 chr11 18842369 18842828 -131940725 - LTR33 LTR ERVL -10 511 11 319 291 122 30 chr11 18843099 18843336 -131940217 - MLT1J LTR MaLR -110 401 143 2217 108 3 3 chr11 18843418 18843715 -131939838 + AluSx SINE Alu 1 297 -15 204 239 22 22 chr11 18844002 18844048 -131939505 - L2 LINE L2 -46 3226 3181 349 300 9 0 chr11 18844631 18844741 -131938812 + MIR SINE MIR 82 192 -70 1211 134 0 16 chr11 18845072 18845238 -131938315 - AluSg/x SINE Alu -13 299 135 2055 100 21 14 chr11 18845238 18845529 -131938024 - AluSx SINE Alu -19 293 1 1211 134 0 16 chr11 18845529 18845549 -131938004 - AluSg/x SINE Alu -177 135 116 198 233 0 0 chr11 18845549 18845592 -131937961 - MER5B DNA MER1_type -133 45 3 4653 112 148 93 chr11 18845610 18847024 -131936529 - pTR5 LTR ERV1 0 2438 741 2312 73 0 70 chr11 18847131 18847459 -131936094 + AluSp SINE Alu 1 305 -8 571 293 53 0 chr11 18847909 18848097 -131935456 - MIR SINE MIR -64 198 1 2450 55 0 3 chr11 18848634 18848925 -131934628 - AluY SINE Alu -21 290 1 566 184 0 19 chr11 18849446 18849549 -131934004 - AluJ SINE Alu -13 299 199 920 168 0 7 chr11 18849550 18849699 -131933854 - AluJ SINE Alu -164 148 1 5137 149 25 20 chr11 18850412 18851415 -131932138 + L1MB2 LINE L1 5164 6171 0 1999 119 13 51 chr11 18851447 18851758 -131931795 - AluSq SINE Alu -14 299 1 2201 97 3 24 chr11 18851770 18852068 -131931485 - AluSc SINE Alu -17 292 1 201 244 115 26 chr11 18852192 18852270 -131931283 + MIR3 SINE MIR 118 202 -6 934 116 0 51 chr11 18852791 18852929 -131930624 - FLAM_C SINE Alu 0 133 3 581 311 8 79 chr11 18852977 18853218 -131930335 - L2 LINE L2 -49 3223 3000 2349 112 0 0 chr11 18853361 18853665 -131929888 - AluSx SINE Alu -8 304 1 23 0 0 0 chr11 18853687 18853710 -131929843 + AT_rich Low_complexity Low_complexity 1 23 0 696 252 73 32 chr11 18853717 18853935 -131929618 + MIR SINE MIR 23 249 -13 216 0 0 0 chr11 18853997 18854021 -131929532 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 1004 184 31 5 chr11 18854320 18854516 -131929037 - MER3 DNA MER1_type 0 209 9 362 283 128 16 chr11 18854669 18854856 -131928697 + L2 LINE L2 2447 2654 -660 186 43 0 0 chr11 18855507 18855530 -131928023 + (A)n Simple_repeat Simple_repeat 1 23 0 23 0 0 0 chr11 18856212 18856235 -131927318 + AT_rich Low_complexity Low_complexity 1 23 0 1668 174 26 22 chr11 18856627 18856938 -131926615 + AluJb SINE Alu 1 312 0 262 261 278 0 chr11 18857169 18857284 -131926269 + L1MEd LINE L1 19 165 -5954 195 129 0 0 chr11 18857285 18857316 -131926237 + (GA)n Simple_repeat Simple_repeat 2 32 0 571 198 21 0 chr11 18857333 18857429 -131926124 + FAM SINE Alu 44 141 -44 203 346 22 52 chr11 18858455 18858591 -131924962 - L2 LINE L2 -3 3310 3179 452 207 71 57 chr11 18858849 18858989 -131924564 - MARNA DNA Mariner -222 364 223 550 136 102 0 chr11 18859010 18859098 -131924455 - FRAM SINE Alu -10 166 70 216 0 0 0 chr11 18859099 18859123 -131924430 + (TG)n Simple_repeat Simple_repeat 1 24 0 183 129 0 0 chr11 18859291 18859322 -131924231 + (TG)n Simple_repeat Simple_repeat 2 32 0 239 150 0 83 chr11 18859347 18859407 -131924146 - AluJo SINE Alu -163 139 85 235 298 79 35 chr11 18859420 18859534 -131924019 - MARNA DNA Mariner -392 194 76 907 241 109 53 chr11 18860307 18860719 -131922834 + MLT1J2 LTR MaLR 1 435 -11 459 284 45 0 chr11 18860722 18860856 -131922697 + MIR SINE MIR 107 246 -16 1677 177 10 7 chr11 18861004 18861298 -131922255 + AluJo SINE Alu 1 295 -17 1992 136 34 0 chr11 18861301 18861596 -131921957 + AluSx SINE Alu 1 305 -7 1630 155 86 31 chr11 18862569 18862859 -131920694 - AluJb SINE Alu -6 306 1 857 88 0 9 chr11 18863398 18863511 -131920042 - AluSg/x SINE Alu -23 287 176 2074 109 44 14 chr11 18863531 18863824 -131919729 - AluY SINE Alu -9 302 1 241 223 32 75 chr11 18864772 18864866 -131918687 - MIR SINE MIR -87 121 32 1410 108 61 0 chr11 18865102 18865315 -131918238 + MER30 DNA MER1_type 5 230 0 2367 89 0 16 chr11 18868161 18868474 -131915079 + AluSq SINE Alu 1 308 -5 2049 105 11 11 chr11 18868574 18868860 -131914693 + AluSx SINE Alu 1 286 -26 30 0 0 0 chr11 18868860 18868890 -131914663 + AT_rich Low_complexity Low_complexity 1 30 0 2651 119 26 50 chr11 18870316 18870779 -131912774 + L1MA5A LINE L1 5846 6297 0 2240 84 3 53 chr11 18870888 18871208 -131912345 + AluSx SINE Alu 3 306 -6 2283 106 10 6 chr11 18871661 18871972 -131911581 + AluSx SINE Alu 1 312 0 383 333 56 47 chr11 18872191 18872404 -131911149 - MIR SINE MIR -28 234 20 269 318 0 0 chr11 18872458 18872568 -131910985 + C-rich Low_complexity Low_complexity 1 110 0 280 344 54 11 chr11 18872700 18872886 -131910667 + L2 LINE L2 1859 2052 -1262 1896 112 4 8 chr11 18874318 18874586 -131908967 + AluSx SINE Alu 34 300 -12 501 246 75 40 chr11 18874623 18874822 -131908731 - L2 LINE L2 -6 3307 3102 2226 98 17 0 chr11 18874931 18875227 -131908326 - AluSp SINE Alu -12 301 1 1195 107 51 0 chr11 18876321 18876498 -131907055 - L1MC/D LINE L1 -715 5618 5433 216 0 0 0 chr11 18876499 18876523 -131907030 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2034 102 11 14 chr11 18876526 18876811 -131906742 - AluY SINE Alu -27 284 1 274 370 79 0 chr11 18877291 18877418 -131906135 + MIR3 SINE MIR 51 187 -21 227 128 21 21 chr11 18877641 18877688 -131905865 + MIR SINE MIR 180 226 -36 234 357 105 38 chr11 18877788 18877998 -131905555 + L2 LINE L2 3030 3253 -19 208 139 0 0 chr11 18878509 18878545 -131905008 + (A)n Simple_repeat Simple_repeat 1 36 0 2097 144 0 3 chr11 18879312 18879625 -131903928 + AluJb SINE Alu 1 312 0 269 237 34 0 chr11 18879641 18879700 -131903853 + L3 LINE CR1 1514 1574 -3 881 215 0 0 chr11 18880140 18880289 -131903264 + FRAM SINE Alu 1 146 -30 1852 166 0 7 chr11 18880498 18880800 -131902753 + AluJb SINE Alu 1 300 -12 636 197 8 34 chr11 18881983 18882100 -131901453 + MER81 DNA DNA 1 114 0 2366 90 0 0 chr11 18882291 18882590 -131900963 - AluSx SINE Alu -13 299 1 1670 159 48 3 chr11 18883999 18884289 -131899264 + LTR23 LTR ERV1 2 304 -133 451 179 253 0 chr11 18884289 18884384 -131899169 + FLAM_C SINE Alu 1 119 -14 2352 95 0 0 chr11 18884413 18884707 -131898846 + AluSc SINE Alu 1 294 -15 1390 131 20 121 chr11 18884707 18885013 -131898540 + AluJo SINE Alu 1 275 -37 1028 128 0 0 chr11 18885055 18885196 -131898357 + AluSx SINE Alu 30 170 -142 232 314 29 0 chr11 18885662 18885732 -131897821 - L2 LINE L2 0 3272 3201 241 320 80 16 chr11 18886051 18886176 -131897377 + MIR SINE MIR 21 153 -109 24 0 0 0 chr11 18886645 18886669 -131896884 + AT_rich Low_complexity Low_complexity 1 24 0 2233 117 51 31 chr11 18887442 18887793 -131895760 + THE1B LTR MaLR 1 358 -6 1613 178 7 46 chr11 18887831 18888134 -131895419 + AluJo SINE Alu 1 291 -21 21 0 0 0 chr11 18888134 18888155 -131895398 + AT_rich Low_complexity Low_complexity 1 21 0 997 92 15 0 chr11 18888705 18888836 -131894717 - AluSq/x SINE Alu -179 133 1 190 114 0 29 chr11 18889134 18889169 -131894384 + L2 LINE L2 671 704 -2610 2808 224 43 65 chr11 18889212 18889755 -131893798 - L1MD2 LINE L1 -13 6346 5793 2652 55 0 0 chr11 18889755 18890062 -131893491 - AluY SINE Alu -4 307 1 2808 224 43 65 chr11 18890062 18890185 -131893368 - L1MD2 LINE L1 -566 5793 5669 2358 118 8 30 chr11 18890185 18890557 -131892996 - THE1B LTR MaLR 0 364 1 12356 81 3 1 chr11 18890557 18892133 -131891420 - THE1B-int LTR MaLR 0 1580 1 2388 124 8 24 chr11 18892133 18892503 -131891050 - THE1B LTR MaLR 0 364 1 2808 224 43 65 chr11 18892503 18892763 -131890790 - L1MD2 LINE L1 -687 5672 5437 1389 175 34 8 chr11 18892765 18893028 -131890525 - MLT1B LTR MaLR -120 270 1 27 49 0 0 chr11 18893059 18893100 -131890453 + AT_rich Low_complexity Low_complexity 1 41 0 7326 169 13 171 chr11 18893340 18895799 -131887754 + L1M2 LINE L1 1 2847 -4002 240 35 0 0 chr11 18895799 18895828 -131887725 + (GGGAA)n Simple_repeat Simple_repeat 4 32 0 2108 76 0 0 chr11 18895828 18896092 -131887461 + AluY SINE Alu 44 307 -4 5522 198 45 27 chr11 18896113 18897079 -131886474 + L1M2 LINE L1 2931 3929 -2919 1705 158 10 24 chr11 18897079 18897371 -131886182 + AluJb SINE Alu 3 290 -22 5522 198 45 27 chr11 18897371 18897769 -131885784 + L1M2 LINE L1 3929 4319 -2529 1917 222 77 10 chr11 18897764 18897842 -131885711 + L1M1 LINE L1 15 86 -7479 * 204 40 0 0 chr11 18897842 18897867 -131885686 + (CA)n Simple_repeat Simple_repeat 2 26 0 1917 222 77 10 chr11 18897867 18898270 -131885283 + L1M1 LINE L1 86 528 -7037 2432 148 35 33 chr11 18898270 18898782 -131884771 + MLT2A2 LTR ERVL 1 510 -5 232 253 32 63 chr11 18899145 18899240 -131884313 - MIR3 SINE MIR -14 194 103 24 32 0 0 chr11 18902418 18902449 -131881104 + AT_rich Low_complexity Low_complexity 1 31 0 2491 74 0 0 chr11 18902449 18902748 -131880805 + AluY SINE Alu 1 299 -12 2178 120 13 3 chr11 18903005 18903305 -131880248 + AluSx SINE Alu 1 303 -9 18253 164 16 22 chr11 18904652 18906531 -131877022 + L1M1 LINE L1 524 2413 -5152 1524 183 95 0 chr11 18906531 18906794 -131876759 + AluSx SINE Alu 1 288 -24 18253 164 16 22 chr11 18906794 18907081 -131876472 + L1M1 LINE L1 2413 2700 -4865 1111 209 153 4 chr11 18907081 18907330 -131876223 + AluJb SINE Alu 3 288 -14 18253 164 16 22 chr11 18907330 18907945 -131875608 + L1M1 LINE L1 2700 3317 -4248 185 0 40 0 chr11 18907945 18907970 -131875583 + (TTG)n Simple_repeat Simple_repeat 2 27 0 18253 164 16 22 chr11 18907970 18910368 -131873185 + L1M1 LINE L1 3317 5671 -1894 7332 198 111 18 chr11 18910368 18911948 -131871605 - MER52A LTR ERV1 -29 1726 1 231 307 109 15 chr11 18911950 18912087 -131871466 - L1P3 LINE L1 -523 5649 5500 246 62 0 0 chr11 18912237 18912269 -131871284 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1777 124 37 44 chr11 18912302 18912600 -131870953 + AluJb SINE Alu 3 298 -14 508 118 59 6 chr11 18912911 18913080 -131870473 + (TG)n Simple_repeat Simple_repeat 2 179 0 659 95 63 0 chr11 18913105 18913263 -131870290 + (TG)n Simple_repeat Simple_repeat 2 169 0 234 150 0 0 chr11 18913321 18913361 -131870192 + (GA)n Simple_repeat Simple_repeat 2 41 0 22 56 0 0 chr11 18913363 18913399 -131870154 + AT_rich Low_complexity Low_complexity 1 36 0 284 260 91 87 chr11 18913533 18913787 -131869766 - L1ME4a LINE L1 -25 6096 5842 471 285 8 0 chr11 18913970 18914100 -131869453 + L2 LINE L2 3183 3313 0 3799 190 4 31 chr11 18914837 18915024 -131868529 - L1P3 LINE L1 -973 5173 4982 1865 147 45 3 chr11 18915024 18915316 -131868237 - AluSx SINE Alu -8 304 1 3799 190 4 31 chr11 18915316 18915934 -131867619 - L1P3 LINE L1 -1164 4982 4390 * 5483 111 71 19 chr11 18915926 18916215 -131867338 + L1PA16 LINE L1 5179 5451 -715 1837 183 0 16 chr11 18916215 18916532 -131867021 + AluJo SINE Alu 1 312 0 5483 111 71 19 chr11 18916532 18917176 -131866377 + L1PA16 LINE L1 5451 6156 -10 2123 93 4 4 chr11 18918045 18918363 -131865190 + AluSc SINE Alu 1 318 0 1386 308 88 31 chr11 18918364 18919240 -131864313 - L2 LINE L2 -673 2641 1716 243 288 68 0 chr11 18919273 18919346 -131864207 - L2 LINE L2 -27 3245 3168 294 293 9 52 chr11 18919466 18919582 -131863971 + MIR SINE MIR 25 135 -127 1710 140 80 0 chr11 18919840 18920126 -131863427 + AluSx SINE Alu 1 309 -3 2163 132 3 0 chr11 18920232 18920542 -131863011 + AluSx SINE Alu 1 311 -1 1857 172 3 3 chr11 18920615 18920905 -131862648 - AluJo SINE Alu -22 290 1 236 206 95 16 chr11 18921403 18921466 -131862087 - L2 LINE L2 -4 3268 3201 1946 144 7 7 chr11 18921927 18922232 -131861321 - AluJo SINE Alu -7 305 1 237 330 0 10 chr11 18923307 18923410 -131860143 + MIR SINE MIR 120 221 -41 2372 226 45 44 chr11 18923462 18923572 -131859981 + L1ME3 LINE L1 5434 5542 -620 1765 171 0 13 chr11 18923572 18923877 -131859676 - AluJo SINE Alu -11 301 1 2372 226 45 44 chr11 18923877 18924492 -131859061 + L1ME3 LINE L1 5542 6160 -2 295 321 48 37 chr11 18924901 18925088 -131858465 - MER5A DNA MER1_type 0 189 1 303 66 16 49 chr11 18925879 18925940 -131857613 + (TTTC)n Simple_repeat Simple_repeat 1 59 0 1411 182 72 45 chr11 18925945 18926236 -131857317 - AluJo SINE Alu -8 304 6 1521 257 53 42 chr11 18927237 18927531 -131856022 - L1MC4a LINE L1 -1903 5905 5616 2054 147 0 0 chr11 18927531 18927831 -131855722 - AluSx SINE Alu -12 300 1 1521 257 53 42 chr11 18927831 18928175 -131855378 - L1MC4a LINE L1 -2192 5616 5260 3368 65 11 23 chr11 18928393 18928866 -131854687 - L1MA2 LINE L1 0 6304 5838 270 298 69 53 chr11 18929027 18929215 -131854338 - L1MC4a LINE L1 -1209 4937 4747 535 285 141 9 chr11 18929370 18929710 -131853843 + L2 LINE L2 1820 2204 -1110 1301 249 59 23 chr11 18929789 18930272 -131853281 - LTR48B LTR ERV1 0 644 115 372 288 108 0 chr11 18930244 18930355 -131853198 - MER34 LTR ERV1 -419 123 1 * 5289 146 23 37 chr11 18930385 18931789 -131851764 + L1PB4 LINE L1 4770 6152 -4 1713 195 141 37 chr11 18931970 18932432 -131851121 - MLT2B1 LTR ERVL -2 518 9 1911 171 0 3 chr11 18932442 18932746 -131850807 + AluJb SINE Alu 1 303 -9 698 254 16 5 chr11 18933694 18933879 -131849674 + LTR41 LTR ERVL 1 187 -586 250 290 7 0 chr11 18934068 18934138 -131849415 - MLT1C LTR MaLR -301 73 1 405 162 29 48 chr11 18934395 18934500 -131849053 + LTR41 LTR ERVL 665 767 -6 2034 130 3 3 chr11 18936405 18936697 -131846856 - AluSx SINE Alu -7 305 14 379 253 110 14 chr11 18936697 18936843 -131846710 + MER5B DNA MER1_type 16 175 -3 281 278 105 37 chr11 18936882 18937044 -131846509 + MIR SINE MIR 20 192 -70 733 154 8 0 chr11 18938263 18938380 -131845173 - 5S rRNA rRNA 0 121 4 410 197 0 0 chr11 18938972 18939038 -131844515 + AluJ/FLAM SINE Alu 1 66 -236 1451 211 0 10 chr11 18938978 18939277 -131844276 + AluJo SINE Alu 7 302 -10 237 108 0 0 chr11 18939534 18939571 -131843982 + (TTCC)n Simple_repeat Simple_repeat 4 40 0 793 197 8 8 chr11 18939583 18939842 -131843711 + CT-rich Low_complexity Low_complexity 1 259 0 751 96 32 0 chr11 18939963 18940088 -131843465 + C-rich Low_complexity Low_complexity 4 132 0 1436 208 11 4 chr11 18940089 18940368 -131843185 - AluJb SINE Alu -31 281 1 1033 266 77 27 chr11 18940369 18940734 -131842819 - L2 LINE L2 -1880 1434 1052 255 316 9 61 chr11 18941041 18941155 -131842398 + L2 LINE L2 3165 3272 0 1103 301 79 7 chr11 18942958 18943376 -131840177 + L2 LINE L2 2530 2977 -337 315 313 40 13 chr11 18943422 18943572 -131839981 - L2 LINE L2 -2592 722 569 1805 149 10 3 chr11 18943635 18943931 -131839622 + AluJo SINE Alu 1 298 -14 205 241 336 26 chr11 18945009 18945125 -131838428 - MIR3 SINE MIR -54 154 3 21 0 0 0 chr11 18946046 18946067 -131837486 + AT_rich Low_complexity Low_complexity 1 21 0 2529 45 0 3 chr11 18946238 18946549 -131837004 - AluY SINE Alu -1 310 1 1828 91 4 4 chr11 18946962 18947215 -131836338 + AluSq SINE Alu 50 302 -11 601 209 0 8 chr11 18948267 18948401 -131835152 - AluY SINE Alu -13 298 166 583 148 0 30 chr11 18948522 18948633 -131834920 - MER5A DNA MER1_type -79 110 4 343 322 40 7 chr11 18950029 18950178 -131833375 + LTR16C LTR ERVL 336 489 -2 604 159 28 19 chr11 18950551 18950658 -131832895 + ERVL LTR ERVL 4510 4617 -1147 265 311 14 0 chr11 18950703 18950777 -131832776 + MIR SINE MIR 25 99 -163 35 24 0 0 chr11 18951428 18951470 -131832083 + AT_rich Low_complexity Low_complexity 1 42 0 2327 75 3 3 chr11 18953362 18953668 -131829885 - AluSg SINE Alu 0 310 5 411 221 93 76 chr11 18953809 18953834 -131829719 + MER5B DNA MER1_type 1 24 -154 1855 129 3 3 chr11 18953834 18954121 -131829432 - AluSx SINE Alu -12 300 14 411 221 93 76 chr11 18954121 18954267 -131829286 + MER5B DNA MER1_type 24 175 -3 241 237 61 53 chr11 18954306 18954420 -131829133 + MIR SINE MIR 20 134 -128 733 154 8 0 chr11 18955710 18955827 -131827726 - 5S rRNA rRNA 0 121 4 683 202 25 0 chr11 18956982 18957101 -131826452 + FLAM_A SINE Alu 1 122 -11 448 318 11 6 chr11 18957438 18957617 -131825936 + L1M4 LINE L1 3773 3952 -2194 489 271 53 0 chr11 18957685 18957818 -131825735 + Charlie1 DNA MER1_type 1 140 -2621 * 2296 195 55 2 chr11 18957815 18958342 -131825211 + Charlie1 DNA MER1_type 2207 2761 0 1803 156 0 3 chr11 18958418 18958713 -131824840 + AluSx SINE Alu 4 297 -15 413 263 58 49 chr11 18958714 18958964 -131824589 + L1M4 LINE L1 4081 4339 -1807 237 194 14 28 chr11 18959116 18959188 -131824365 + L1M4 LINE L1 4549 4619 -1527 800 172 0 6 chr11 18959205 18959385 -131824168 + CT-rich Low_complexity Low_complexity 1 179 0 1269 207 3 24 chr11 18959385 18959704 -131823849 - AluJb SINE Alu 0 313 1 2120 113 3 0 chr11 18959752 18960052 -131823501 + AluSp SINE Alu 1 301 -12 243 173 0 0 chr11 18960106 18960158 -131823395 + (TA)n Simple_repeat Simple_repeat 2 53 0 2254 78 3 0 chr11 18960159 18960454 -131823099 - AluSq SINE Alu -17 296 1 4704 151 96 21 chr11 18960454 18961302 -131822251 + MER21A LTR ERV1 15 925 -6 2673 202 31 4 chr11 18962089 18962628 -131820925 + MER74A LTR ERVL 1 554 -4 1849 146 0 7 chr11 18962642 18962923 -131820630 - AluJo SINE Alu -31 281 3 375 292 22 0 chr11 18963007 18963096 -131820457 + L1MC4 LINE L1 6614 6704 -1338 885 189 0 6 chr11 18963104 18963273 -131820280 + AluJb SINE Alu 143 310 -2 649 140 0 10 chr11 18963534 18963634 -131819919 + AluY SINE Alu 2 100 -211 1440 215 102 48 chr11 18964078 18964520 -131819033 - MER31B LTR ERV1 0 466 1 261 312 64 6 chr11 18965405 18965562 -131817991 - L1ME LINE L1 -230 5891 5726 1665 154 4 0 chr11 18966365 18966624 -131816929 - AluSx SINE Alu -52 260 1 350 188 23 62 chr11 18966649 18966777 -131816776 - L1MC5 LINE L1 -476 7485 7363 1890 108 4 0 chr11 18967488 18967747 -131815806 - AluSx SINE Alu -52 260 1 1841 101 0 0 chr11 18967852 18968099 -131815454 - AluSx SINE Alu -65 247 1 212 0 36 0 chr11 18968240 18968268 -131815285 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 333 47 0 0 chr11 18968324 18968367 -131815186 + (TG)n Simple_repeat Simple_repeat 2 44 0 211 328 45 0 chr11 18968561 18968628 -131814925 + L2 LINE L2 2985 3054 -218 193 268 152 9 chr11 18968722 18968834 -131814719 + L2 LINE L2 3167 3294 -19 342 145 0 16 chr11 18969145 18969207 -131814346 + FLAM SINE Alu 71 131 -2 189 0 0 0 chr11 18969569 18969590 -131813963 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 811 172 6 50 chr11 18969596 18969776 -131813777 - AluJo SINE Alu -23 289 118 586 194 0 0 chr11 18970523 18970621 -131812932 - FLAM_A SINE Alu -33 109 12 2563 33 0 3 chr11 18970641 18970948 -131812605 + AluY SINE Alu 1 306 -5 225 335 38 16 chr11 18972285 18972470 -131811083 - L1 LINE L1 -1076 5070 4882 257 221 91 13 chr11 18972520 18972597 -131810956 + L1M1 LINE L1 5380 5462 -843 255 210 80 50 chr11 18972597 18972697 -131810856 - L1 LINE L1 -1321 4825 4723 27 29 0 0 chr11 18973153 18973187 -131810366 + AT_rich Low_complexity Low_complexity 1 34 0 827 193 60 0 chr11 18973355 18973505 -131810048 - AluJb SINE Alu -17 295 137 685 259 47 42 chr11 18973540 18973752 -131809801 - MIR SINE MIR -38 224 12 482 211 165 9 chr11 18975603 18975712 -131807841 - L2 LINE L2 0 3313 3188 425 317 150 33 chr11 18976109 18976409 -131807144 - L2 LINE L2 -1198 2116 1782 360 311 185 26 chr11 18976433 18976774 -131806779 - L2 LINE L2 0 3313 2919 2370 43 0 0 chr11 18976901 18977181 -131806372 + LTR5 LTR ERVK 1 280 -689 217 240 192 27 chr11 18977880 18978026 -131805527 + L2 LINE L2 2328 2497 -817 635 165 0 0 chr11 18978524 18978615 -131804938 - AluS SINE Alu -220 92 2 184 240 0 130 chr11 18978900 18979000 -131804553 + MIR SINE MIR 121 207 -55 206 222 111 0 chr11 18979350 18979404 -131804149 + L2 LINE L2 3244 3303 -10 22 0 0 0 chr11 18979848 18979870 -131803683 + AT_rich Low_complexity Low_complexity 1 22 0 248 182 80 147 chr11 18979923 18980148 -131803405 + L1ME4a LINE L1 5812 6021 -100 805 154 23 8 chr11 18980640 18980770 -131802783 - AluJb SINE Alu -179 133 2 2031 126 0 7 chr11 18982147 18982457 -131801096 - AluSx SINE Alu -4 308 1 667 224 20 27 chr11 18982550 18982697 -131800856 - MER45A DNA AcHobo -23 155 10 180 0 0 0 chr11 18984585 18984605 -131798948 + (TG)n Simple_repeat Simple_repeat 2 21 0 670 223 60 49 chr11 18984617 18984801 -131798752 + MER20 DNA MER1_type 4 189 -30 542 301 6 0 chr11 18985062 18985238 -131798315 + L1ME2 LINE L1 5988 6164 0 2949 114 27 5 chr11 18985345 18985783 -131797770 - MER83 LTR ERV1 0 448 1 1604 162 7 32 chr11 18986126 18986434 -131797119 - AluJb SINE Alu -12 300 1 2283 79 3 0 chr11 18986464 18986754 -131796799 + AluSp SINE Alu 2 292 -21 362 276 155 35 chr11 18987082 18987256 -131796297 - MIR SINE MIR -34 228 34 1303 176 57 0 chr11 18987418 18987662 -131795891 + MER58B DNA MER1_type 56 313 -28 214 299 0 0 chr11 18987680 18987747 -131795806 + MER5A DNA MER1_type 4 70 -119 188 371 52 0 chr11 18988948 18989045 -131794508 - MER5A DNA MER1_type -81 108 7 1656 81 0 0 chr11 18990175 18990386 -131793167 - AluSq SINE Alu -15 298 88 1549 108 10 0 chr11 18990875 18991079 -131792474 - AluSq SINE Alu -106 207 2 5181 74 12 0 chr11 18991080 18991927 -131791626 - L1P3 LINE L1 -665 5489 4637 1628 66 21 0 chr11 18991944 18992269 -131791284 - L1P3 LINE L1 -683 5489 5160 5801 76 4 0 chr11 18992273 18993076 -131790477 - L1P3 LINE L1 -1511 4635 3830 395 242 23 79 chr11 18993788 18994003 -131789550 - L1ME4a LINE L1 -195 5926 5724 665 184 0 57 chr11 18994092 18994233 -131789320 - FLAM_C SINE Alu -10 133 1 983 147 0 0 chr11 18994403 18994539 -131789014 + AluSq/x SINE Alu 1 136 -176 2226 67 21 3 chr11 18994541 18994824 -131788729 + AluY SINE Alu 1 288 -23 257 204 83 46 chr11 18995264 18995372 -131788181 - L1MC4 LINE L1 -20 8022 7911 32 0 0 0 chr11 18995482 18995514 -131788039 + AT_rich Low_complexity Low_complexity 1 32 0 459 276 37 14 chr11 18995587 18995864 -131787689 - L1MC5 LINE L1 -393 7415 7230 290 153 17 0 chr11 18997279 18997338 -131786215 + (CA)n Simple_repeat Simple_repeat 1 60 0 26 50 0 0 chr11 18998329 18998369 -131785184 + AT_rich Low_complexity Low_complexity 1 40 0 1995 109 3 40 chr11 18998369 18998672 -131784881 - AluSx SINE Alu -20 292 1 268 298 87 19 chr11 18999635 18999843 -131783710 - L1ME4a LINE L1 -102 6019 5798 2182 107 0 10 chr11 18999949 19000263 -131783290 - AluSx SINE Alu 0 312 1 302 335 187 62 chr11 19000565 19000627 -131782926 - L2 LINE L2 -25 3247 3194 1937 139 24 14 chr11 19000627 19000922 -131782631 - AluSx SINE Alu -10 302 5 302 335 187 62 chr11 19000922 19001116 -131782437 - L2 LINE L2 -78 3194 2959 223 196 59 0 chr11 19001541 19001592 -131781961 + L2 LINE L2 3256 3309 -4 31 26 0 0 chr11 19002088 19002126 -131781427 + AT_rich Low_complexity Low_complexity 1 38 0 809 229 6 33 chr11 19002139 19002322 -131781231 + AluJo SINE Alu 1 178 -134 2126 126 14 0 chr11 19002452 19002745 -131780808 - AluSx SINE Alu -15 297 1 1675 161 9 63 chr11 19002841 19003157 -131780396 + AluSx SINE Alu 1 299 -13 349 256 13 0 chr11 19003226 19003304 -131780249 - MER2 DNA MER2_type 0 345 267 359 174 45 61 chr11 19003340 19003472 -131780081 - MER2 DNA MER2_type -150 195 66 1235 311 108 24 chr11 19005243 19005882 -131777671 - L3 LINE CR1 -7 1570 878 24 32 0 0 chr11 19006079 19006110 -131777443 + AT_rich Low_complexity Low_complexity 1 31 0 346 253 8 13 chr11 19006434 19006523 -131777030 - MIR SINE MIR -105 103 11 1193 97 11 6 chr11 19056564 19056740 -131726813 - AluSx SINE Alu -108 204 28 326 266 201 7 chr11 19056796 19056935 -131726618 + MIR SINE MIR 53 218 -44 2063 114 3 3 chr11 19056941 19057238 -131726315 + AluSx SINE Alu 1 297 -15 1844 134 4 0 chr11 19057242 19057517 -131726036 + AluSx SINE Alu 1 276 -36 25 31 0 0 chr11 19057521 19057553 -131726000 + AT_rich Low_complexity Low_complexity 1 32 0 1838 166 3 6 chr11 19057653 19057966 -131725587 + AluJo SINE Alu 1 312 0 2268 84 3 7 chr11 19058256 19058564 -131724989 + AluSp SINE Alu 5 311 -2 1902 113 6 53 chr11 19058571 19058716 -131724837 + AluSg SINE Alu 1 151 -159 2295 53 0 13 chr11 19058716 19059017 -131724536 + AluY SINE Alu 1 297 -14 1902 113 6 53 chr11 19059017 19059191 -131724362 + AluSg SINE Alu 151 305 -5 196 264 29 25 chr11 19060903 19060982 -131722571 + MIR SINE MIR 31 103 -105 780 191 0 8 chr11 19061492 19061623 -131721930 - AluJo SINE Alu -175 137 8 216 0 0 0 chr11 19061635 19061659 -131721894 + (TA)n Simple_repeat Simple_repeat 2 25 0 2047 109 3 3 chr11 19061659 19061953 -131721600 - AluSg SINE Alu -16 294 1 2059 113 3 7 chr11 19061956 19062291 -131721262 - AluSx SINE Alu 0 312 1 2195 53 7 36 chr11 19062299 19062603 -131720950 - AluY SINE Alu -16 295 1 1948 123 14 0 chr11 19062885 19063177 -131720376 - AluSx SINE Alu -16 296 1 347 315 20 27 chr11 19063184 19063333 -131720220 - MIR3 SINE MIR -58 150 3 181 274 88 53 chr11 19064084 19064197 -131719356 + L2 LINE L2 2437 2553 -761 2014 116 3 0 chr11 19064268 19064553 -131719000 + AluSq SINE Alu 1 286 -27 25 0 0 0 chr11 19064560 19064585 -131718968 + AT_rich Low_complexity Low_complexity 1 25 0 215 286 143 24 chr11 19064585 19064753 -131718800 + L2 LINE L2 2702 2889 -425 2652 209 34 12 chr11 19065099 19065739 -131717814 - L1MC4 LINE L1 -145 7897 7244 885 183 0 23 chr11 19065740 19065915 -131717638 - FRAM SINE Alu 0 176 6 620 200 171 18 chr11 19065917 19066087 -131717466 - L1MC4 LINE L1 -795 7247 7052 1843 143 0 3 chr11 19066121 19066414 -131717139 - AluJb SINE Alu 0 312 21 24 0 0 0 chr11 19066431 19066455 -131717098 + AT_rich Low_complexity Low_complexity 1 24 0 2381 74 0 3 chr11 19066455 19066767 -131716786 - AluY SINE Alu 0 311 1 536 216 5 130 chr11 19066771 19066823 -131716730 - L1ME1 LINE L1 0 6166 6109 1517 144 0 35 chr11 19066823 19067105 -131716448 - AluJb SINE Alu 0 307 35 536 216 5 130 chr11 19067105 19067258 -131716295 - L1ME1 LINE L1 -57 6109 5985 * 810 195 157 49 chr11 19067251 19067426 -131716127 - L1MC4 LINE L1 -1079 6963 6748 1975 128 20 3 chr11 19067426 19067724 -131715829 + AluSx SINE Alu 1 303 -9 810 195 157 49 chr11 19067724 19067815 -131715738 - L1MC4 LINE L1 -1294 6748 6668 828 219 26 0 chr11 19067919 19068074 -131715479 - FRAM SINE Alu -7 159 1 1415 135 0 18 chr11 19068109 19068338 -131715215 - AluJb SINE Alu -7 305 81 197 281 47 16 chr11 19068527 19068591 -131714962 + L2 LINE L2 3230 3295 -18 722 183 8 30 chr11 19068758 19068889 -131714664 + FLAM_A SINE Alu 1 128 -5 531 275 69 6 chr11 19070037 19070197 -131713356 - MIR SINE MIR -14 248 79 875 120 15 8 chr11 19070583 19070716 -131712837 + AluJo SINE Alu 1 134 -178 847 182 0 0 chr11 19071030 19071200 -131712353 - AluJb SINE Alu 0 306 137 570 168 0 7 chr11 19071190 19071399 -131712154 + AluJ SINE Alu 26 282 -30 * 183 80 0 0 chr11 19071401 19071426 -131712127 + (TGAA)n Simple_repeat Simple_repeat 3 27 0 2192 103 0 0 chr11 19071445 19071746 -131711807 - AluSc SINE Alu -8 301 1 28 29 0 0 chr11 19071807 19071842 -131711711 + AT_rich Low_complexity Low_complexity 1 35 0 2198 100 10 0 chr11 19072128 19072428 -131711125 - AluSx SINE Alu -9 303 1 25 51 0 0 chr11 19072494 19072533 -131711020 + AT_rich Low_complexity Low_complexity 1 39 0 1882 112 11 7 chr11 19072710 19072996 -131710557 + AluSx SINE Alu 1 287 -25 6226 113 82 66 chr11 19073324 19073981 -131709572 - Tigger3b DNA MER2_type -1797 1231 545 2248 87 0 3 chr11 19073981 19074281 -131709272 - AluSg SINE Alu 0 310 12 6226 113 82 66 chr11 19074281 19074834 -131708719 - Tigger3b DNA MER2_type -2483 545 2 434 179 60 0 chr11 19075027 19075111 -131708442 + MER117 DNA MER1_type 1 89 -108 2122 104 7 3 chr11 19075111 19075408 -131708145 + AluSq SINE Alu 1 298 -15 992 202 12 0 chr11 19075754 19075927 -131707626 + FAM SINE Alu 1 175 0 325 266 0 25 chr11 19076146 19076225 -131707328 + MER5B DNA MER1_type 29 105 -73 889 108 7 50 chr11 19076267 19076406 -131707147 + FLAM_C SINE Alu 1 133 0 1948 137 0 0 chr11 19076413 19076720 -131706833 + AluSx SINE Alu 1 307 0 280 328 67 22 chr11 19076780 19076914 -131706639 - MIR3 SINE MIR -48 160 21 234 222 0 0 chr11 19077422 19077476 -131706077 + (TA)n Simple_repeat Simple_repeat 2 55 0 791 154 0 70 chr11 19078490 19078633 -131704920 + FLAM_A SINE Alu 1 133 0 1712 173 3 3 chr11 19078891 19079180 -131704373 + AluJo SINE Alu 1 289 -23 684 198 16 16 chr11 19079791 19079917 -131703636 - AluJb SINE Alu -40 272 147 2044 104 0 7 chr11 19079918 19080207 -131703346 + AluSc SINE Alu 1 287 -22 2520 48 0 0 chr11 19080250 19080560 -131702993 + AluY SINE Alu 1 310 -1 507 288 62 99 chr11 19080624 19081009 -131702544 + L2 LINE L2 2902 3272 0 2098 108 3 0 chr11 19081050 19081347 -131702206 - AluSg SINE Alu -12 298 1 1842 157 3 0 chr11 19081347 19081653 -131701900 - AluJo SINE Alu -3 309 3 1240 157 62 16 chr11 19081792 19082034 -131701519 + AluJb SINE Alu 38 290 -22 269 353 66 33 chr11 19082089 19082333 -131701220 - L2 LINE L2 -339 2975 2724 4015 111 84 19 chr11 19082507 19082976 -131700577 - L1MA4 LINE L1 -7 6293 5856 1637 141 53 30 chr11 19082976 19083280 -131700273 - AluJb SINE Alu -1 311 1 1559 106 9 5 chr11 19083280 19083498 -131700055 - AluSx SINE Alu -93 219 1 4015 111 84 19 chr11 19083498 19083721 -131699832 - L1MA4 LINE L1 -443 5857 5555 1343 147 32 9 chr11 19083884 19084102 -131699451 - MLT2B1 LTR ERVL 0 520 298 597 283 40 11 chr11 19084227 19084404 -131699149 + MIR SINE MIR 5 186 -76 208 61 82 122 chr11 19084404 19084453 -131699100 + L2 LINE L2 3214 3260 -12 821 137 23 15 chr11 19084928 19085059 -131698494 - FLAM_C SINE Alu -1 132 1 306 195 13 65 chr11 19085189 19085266 -131698287 - MER21B LTR ERV1 -661 202 130 2211 80 6 10 chr11 19085509 19085822 -131697731 + AluSx SINE Alu 1 312 0 906 130 12 30 chr11 19085833 19086002 -131697551 + AluJb SINE Alu 147 312 0 412 212 10 50 chr11 19086262 19086361 -131697192 - L2 LINE L2 -5 3308 3214 182 171 0 57 chr11 19086366 19086401 -131697152 - MIR SINE MIR -57 151 119 206 318 45 18 chr11 19087275 19087385 -131696168 - L2 LINE L2 -18 3254 3142 195 313 50 30 chr11 19087397 19087496 -131696057 - MIR SINE MIR -55 153 53 344 242 36 18 chr11 19087923 19088088 -131695465 + (CCCCG)n Simple_repeat Simple_repeat 2 169 0 422 272 144 18 chr11 19088190 19088464 -131695089 - L1M4 LINE L1 -2846 4002 1685 2142 110 7 0 chr11 19090255 19090545 -131693008 + AluY SINE Alu 1 292 -19 503 69 0 69 chr11 19091108 19091195 -131692358 - Alu SINE Alu -8 301 221 1515 92 39 0 chr11 19091124 19091330 -131692223 - AluSq SINE Alu -18 295 82 * 2406 84 3 3 chr11 19091329 19091638 -131691915 - AluY SINE Alu -2 309 1 585 136 0 0 chr11 19091649 19091730 -131691823 - AluSq SINE Alu -231 82 2 1426 182 13 50 chr11 19092315 19092617 -131690936 - AluJo SINE Alu -21 291 1 235 271 0 0 chr11 19093206 19093265 -131690288 + G-rich Low_complexity Low_complexity 2 60 0 51 58 0 0 chr11 19093351 19093437 -131690116 + AT_rich Low_complexity Low_complexity 1 86 0 2068 117 21 3 chr11 19093437 19093719 -131689834 - AluSq SINE Alu -26 287 1 2576 65 0 0 chr11 19093742 19094049 -131689504 - AluY SINE Alu -2 309 3 2133 113 20 0 chr11 19094225 19094525 -131689028 - AluSx SINE Alu -4 308 3 1570 191 24 14 chr11 19094582 19094870 -131688683 - AluJo SINE Alu -21 291 1 1452 113 5 9 chr11 19096200 19096413 -131687140 - AluSc SINE Alu -9 300 89 1596 140 0 38 chr11 19096440 19096704 -131686849 + AluJb SINE Alu 44 297 -15 2610 41 0 0 chr11 19096797 19097091 -131686462 + AluY SINE Alu 1 294 -17 388 258 34 31 chr11 19097348 19097602 -131685951 - L1MD2 LINE L1 -295 5875 5650 2125 100 17 0 chr11 19098243 19098532 -131685021 - AluSg SINE Alu -16 294 1 713 190 0 29 chr11 19098562 19098699 -131684854 + FLAM_C SINE Alu 1 133 0 2265 98 10 3 chr11 19098704 19099000 -131684553 + AluSq SINE Alu 1 298 -15 2071 109 38 7 chr11 19099002 19099295 -131684258 + AluSx SINE Alu 1 302 -10 682 189 7 14 chr11 19100478 19100621 -131682932 + FLAM_C SINE Alu 2 143 0 930 117 95 56 chr11 19100816 19100896 -131682657 + MER30B DNA MER1_type 4 79 -111 1606 143 33 57 chr11 19100896 19101197 -131682356 + AluSg SINE Alu 2 295 -15 930 117 95 56 chr11 19101197 19101295 -131682258 + MER30B DNA MER1_type 79 189 -1 459 179 18 54 chr11 19101296 19101373 -131682180 - L1MB7 LINE L1 -57 6127 6054 1762 152 38 7 chr11 19101373 19101663 -131681890 + AluJb SINE Alu 1 299 -13 459 179 18 54 chr11 19101663 19101697 -131681856 - L1MB7 LINE L1 -130 6054 6020 31 26 0 0 chr11 19101736 19101774 -131681779 + AT_rich Low_complexity Low_complexity 1 38 0 423 245 20 0 chr11 19101878 19101980 -131681573 - L1MC4 LINE L1 -1133 6909 6806 650 92 92 76 chr11 19102167 19102182 -131681371 - FLAM_C SINE Alu -169 133 120 2390 76 0 0 chr11 19102182 19102471 -131681082 + AluY SINE Alu 1 289 -22 182 36 0 36 chr11 19102471 19102499 -131681054 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 650 92 92 76 chr11 19102499 19102613 -131680940 - FLAM_C SINE Alu -181 121 1 199 329 56 65 chr11 19103101 19103332 -131680221 - L2 LINE L2 -382 2932 2704 887 88 72 8 chr11 19103345 19103470 -131680083 + AluSq/x SINE Alu 1 133 -179 1986 84 39 42 chr11 19103482 19103768 -131679785 + AluSg SINE Alu 1 285 -25 207 263 109 58 chr11 19103926 19104082 -131679471 - L2 LINE L2 -221 3051 2888 399 237 102 60 chr11 19104560 19104775 -131678778 - MIR SINE MIR 0 262 39 2230 106 0 3 chr11 19105017 19105310 -131678243 + AluSq SINE Alu 1 292 -21 230 133 0 22 chr11 19105841 19105886 -131677667 + (TG)n Simple_repeat Simple_repeat 1 44 0 786 156 104 0 chr11 19106130 19106265 -131677288 + FRAM SINE Alu 1 146 -30 28 0 0 0 chr11 19106265 19106293 -131677260 + AT_rich Low_complexity Low_complexity 1 28 0 1712 153 0 62 chr11 19106303 19106623 -131676930 + AluJb SINE Alu 1 300 -12 2287 109 0 10 chr11 19106751 19107062 -131676491 - AluSg SINE Alu -2 308 1 556 294 86 20 chr11 19107248 19107493 -131676060 + MIR SINE MIR 1 261 -1 1943 152 0 10 chr11 19107735 19108037 -131675516 - AluJo SINE Alu -13 299 1 344 256 47 0 chr11 19108357 19108443 -131675110 + MIR SINE MIR 37 126 -136 1995 145 7 13 chr11 19108443 19108767 -131674786 - AluJb SINE Alu 0 326 5 449 214 154 0 chr11 19108821 19108938 -131674615 + MIR SINE MIR 118 252 -10 1393 161 45 127 chr11 19108990 19109368 -131674185 - MER7A DNA MER2_type 0 346 2 2287 48 11 0 chr11 19109421 19109689 -131673864 + AluY SINE Alu 1 271 -40 2144 117 7 0 chr11 19109930 19110243 -131673310 + AluSx SINE Alu 1 315 0 1618 160 45 7 chr11 19110257 19110545 -131673008 + AluJb SINE Alu 1 299 -13 2103 105 0 0 chr11 19110573 19110840 -131672713 + AluSx SINE Alu 1 267 -45 202 269 0 0 chr11 19111000 19111052 -131672501 + CT-rich Low_complexity Low_complexity 4 55 0 516 210 222 51 chr11 19111355 19111688 -131671865 - HAL1 LINE L1 -2 2505 2116 431 191 45 18 chr11 19111695 19111805 -131671748 - LTR33 LTR ERVL -6 515 403 228 261 67 42 chr11 19111934 19112053 -131671500 - LTR33 LTR ERVL -395 126 5 723 211 77 13 chr11 19112094 19112250 -131671303 + AluJb SINE Alu 137 302 -10 345 302 60 0 chr11 19112251 19112367 -131671186 - HAL1 LINE L1 -1802 705 583 376 260 148 24 chr11 19112433 19112602 -131670951 - HAL1 LINE L1 -2044 463 274 329 300 0 0 chr11 19112760 19112840 -131670713 - HAL1 LINE L1 -2427 80 1 1622 147 52 59 chr11 19113049 19113214 -131670339 - AluJo SINE Alu -8 304 139 1600 96 27 5 chr11 19113214 19113434 -131670119 - AluSg/x SINE Alu -4 308 84 2590 46 0 7 chr11 19113436 19113738 -131669815 - AluY SINE Alu -11 300 1 1622 147 52 59 chr11 19113738 19113875 -131669678 - AluJo SINE Alu -174 138 1 1119 213 9 85 chr11 19114010 19114169 -131669384 + AluJo SINE Alu 1 124 -188 2402 83 0 7 chr11 19114169 19114470 -131669083 + AluSq SINE Alu 3 301 -12 1119 213 9 85 chr11 19114470 19114638 -131668915 + AluJo SINE Alu 124 303 -9 279 169 34 0 chr11 19114692 19114751 -131668802 - AluSc SINE Alu 0 299 239 2378 76 3 0 chr11 19115050 19115340 -131668213 - AluSq SINE Alu -22 291 1 314 169 15 0 chr11 19116346 19116411 -131667142 + CT-rich Low_complexity Low_complexity 3 68 0 2133 127 6 19 chr11 19116449 19116765 -131666788 - AluSx SINE Alu 0 312 1 309 116 58 43 chr11 19116766 19116835 -131666718 - L1PA16 LINE L1 -127 6039 5970 2433 94 0 0 chr11 19116835 19117143 -131666410 - AluSc SINE Alu -1 308 1 544 241 97 26 chr11 19117222 19117450 -131666103 - MLT1K LTR MaLR 0 588 345 337 374 89 14 chr11 19117613 19117827 -131665726 - MLT1K LTR MaLR -356 232 3 2290 110 3 0 chr11 19117928 19118237 -131665316 + AluSx SINE Alu 1 310 -2 22 0 0 0 chr11 19118755 19118777 -131664776 + AT_rich Low_complexity Low_complexity 1 22 0 1830 98 8 0 chr11 19118819 19119055 -131664498 - AluSx SINE Alu -15 297 60 2195 115 0 19 chr11 19119067 19119381 -131664172 - AluSx SINE Alu -4 308 1 24 32 0 0 chr11 19119381 19119412 -131664141 + AT_rich Low_complexity Low_complexity 1 31 0 262 75 62 62 chr11 19120042 19120122 -131663431 + CT-rich Low_complexity Low_complexity 3 82 0 180 163 0 0 chr11 19120171 19120214 -131663339 + C-rich Low_complexity Low_complexity 3 45 0 555 176 0 128 chr11 19120232 19120274 -131663279 - FAM SINE Alu -174 147 101 2189 124 0 0 chr11 19120274 19120565 -131662988 - AluSx SINE Alu -21 291 1 555 176 0 128 chr11 19120565 19120670 -131662883 - FAM SINE Alu -220 101 19 1187 179 172 23 chr11 19120785 19121047 -131662506 - AluJo SINE Alu -1 301 1 22 0 0 0 chr11 19121139 19121161 -131662392 + AT_rich Low_complexity Low_complexity 1 22 0 665 174 53 16 chr11 19121200 19121409 -131662144 + AluJo SINE Alu 36 285 -27 35 41 0 0 chr11 19121582 19121631 -131661922 + AT_rich Low_complexity Low_complexity 1 49 0 2234 96 11 0 chr11 19121804 19122106 -131661447 - AluSx SINE Alu 0 305 1 859 250 23 41 chr11 19122484 19122704 -131660849 - MER58A DNA MER1_type 0 224 9 744 254 107 27 chr11 19122890 19123189 -131660364 + L1MEd LINE L1 623 897 -5413 1944 144 3 7 chr11 19123189 19123498 -131660055 + AluSx SINE Alu 1 308 0 744 254 107 27 chr11 19123498 19123945 -131659608 + L1MEd LINE L1 897 1555 -4755 482 129 153 0 chr11 19123960 19124045 -131659508 + FLAM_A SINE Alu 43 140 -2 245 291 73 45 chr11 19124053 19124232 -131659321 + L1MEd LINE L1 1555 1738 -4572 1981 121 3 34 chr11 19124415 19124737 -131658816 - AluSx SINE Alu 0 312 1 658 174 25 16 chr11 19124850 19124971 -131658582 - AluSg/x SINE Alu -77 235 114 2444 80 0 6 chr11 19125063 19125375 -131658178 + AluY SINE Alu 2 311 0 580 200 0 0 chr11 19125465 19125560 -131657993 - FAM SINE Alu -67 118 24 2334 103 0 0 chr11 19125648 19125950 -131657603 + AluSx SINE Alu 1 302 -10 472 242 61 114 chr11 19126373 19126481 -131657072 - MIR SINE MIR -2 260 148 2182 128 0 0 chr11 19126481 19126786 -131656767 + AluSg1 SINE Alu 1 305 -4 472 242 61 114 chr11 19126786 19126941 -131656612 - MIR SINE MIR -114 148 11 2183 131 3 0 chr11 19127083 19127381 -131656172 - AluSx SINE Alu -13 299 1 965 119 0 0 chr11 19128034 19128160 -131655393 - AluSq/x SINE Alu -187 126 1 744 145 32 16 chr11 19128275 19128399 -131655154 - FLAM_C SINE Alu -16 127 2 22 0 0 0 chr11 19128400 19128422 -131655131 + AT_rich Low_complexity Low_complexity 1 22 0 2282 100 7 7 chr11 19128432 19128732 -131654821 + AluSc SINE Alu 1 300 -9 2388 98 3 0 chr11 19128744 19129049 -131654504 + AluSg SINE Alu 3 308 -2 713 263 92 24 chr11 19129065 19129400 -131654153 + L1M4 LINE L1 3805 4162 -1984 1633 181 18 7 chr11 19129420 19129696 -131653857 + AluJo SINE Alu 1 279 -33 258 32 0 0 chr11 19129697 19129728 -131653825 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 22 35 0 0 chr11 19131232 19131261 -131652292 + AT_rich Low_complexity Low_complexity 1 29 0 983 96 0 15 chr11 19131341 19131476 -131652077 - FLAM_C SINE Alu 0 133 1 578 132 19 19 chr11 19131672 19131778 -131651775 + AluSp/q SINE Alu 197 302 -11 270 226 196 10 chr11 19131781 19131883 -131651670 - MIR SINE MIR -111 151 31 676 108 0 20 chr11 19132213 19132315 -131651238 + FLAM_C SINE Alu 5 104 -39 2347 113 0 3 chr11 19132460 19132769 -131650784 + AluSq SINE Alu 1 308 -5 1314 137 0 25 chr11 19132769 19132966 -131650587 + AluSg/x SINE Alu 106 297 -13 327 307 10 15 chr11 19133145 19133269 -131650284 - MIR SINE MIR -85 123 3 2413 102 0 3 chr11 19133436 19133750 -131649803 + AluSq SINE Alu 1 313 0 1248 97 0 12 chr11 19134133 19134298 -131649255 - AluSg/x SINE Alu -18 292 130 1922 84 84 11 chr11 19134300 19134584 -131648969 - AluSx SINE Alu -7 305 1 399 209 11 33 chr11 19134599 19134690 -131648863 + MER106A DNA MER1_type 148 236 0 3305 98 2 15 chr11 19134718 19135175 -131648378 - MLT2A2 LTR ERVL 0 453 3 2203 77 7 0 chr11 19135275 19135547 -131648006 - AluSx SINE Alu -12 300 27 2012 125 10 10 chr11 19135676 19135973 -131647580 - AluSx SINE Alu -15 297 1 480 180 60 20 chr11 19138174 19138274 -131645279 - FLAM_C SINE Alu -29 114 11 344 90 149 0 chr11 19139434 19139501 -131644052 - L1MC2 LINE L1 -14 6330 6254 2206 153 53 29 chr11 19139520 19140060 -131643493 + MLT2A2 LTR ERVL 1 554 0 2206 168 21 21 chr11 19140067 19140495 -131643058 - L1MC3 LINE L1 -115 7670 7243 1583 164 3 75 chr11 19140615 19140764 -131642789 + AluJo SINE Alu 9 124 -188 2433 79 0 7 chr11 19140764 19141067 -131642486 + AluSq SINE Alu 1 301 -12 913 216 0 0 chr11 19141068 19141235 -131642318 + AluJo/FRAM SINE Alu 137 303 -9 1087 142 28 11 chr11 19141416 19141592 -131641961 + AluSq SINE Alu 120 298 -15 643 111 89 0 chr11 19141595 19141685 -131641868 - FLAM_A SINE Alu -26 116 19 1931 140 14 3 chr11 19141747 19142039 -131641514 + AluSx SINE Alu 3 297 -15 2069 112 14 3 chr11 19142172 19142466 -131641087 + AluSx SINE Alu 1 297 -15 1667 161 65 0 chr11 19142605 19142896 -131640657 + AluJb SINE Alu 1 310 -2 1341 116 0 6 chr11 19142940 19143121 -131640432 + AluSx SINE Alu 1 180 -132 426 194 111 21 chr11 19143126 19143270 -131640283 + L1ME3A LINE L1 4496 4652 -1494 1129 264 130 30 chr11 19143435 19144002 -131639551 + L1ME3A LINE L1 4960 5648 -522 2429 74 3 0 chr11 19144002 19144298 -131639255 + AluSg SINE Alu 1 297 -13 1129 264 130 30 chr11 19144298 19144599 -131638954 + L1ME3A LINE L1 5648 5917 -253 2289 97 23 0 chr11 19144626 19144926 -131638627 + AluSx SINE Alu 2 308 -4 732 169 0 73 chr11 19145078 19145214 -131638339 - FRAM SINE Alu -14 162 37 2094 96 48 3 chr11 19145375 19145666 -131637887 - AluSx SINE Alu -8 304 1 1939 153 3 3 chr11 19145809 19146103 -131637450 + AluSx SINE Alu 9 302 -10 2342 81 27 0 chr11 19146326 19146621 -131636932 - AluSc SINE Alu -6 303 1 584 262 0 35 chr11 19147172 19147191 -131636362 - L1MA10 LINE L1 0 6334 6316 737 277 5 5 chr11 19147191 19147375 -131636178 - L1ME1 LINE L1 -5 6161 5978 634 194 38 7 chr11 19147378 19147542 -131636011 - L1ME2 LINE L1 -226 5938 5767 1315 192 3 70 chr11 19147587 19147874 -131635679 - AluSx SINE Alu -44 268 1 904 259 1 1 chr11 19147874 19148093 -131635460 - L1M2 LINE L1 -398 5768 5575 751 163 7 20 chr11 19148094 19148364 -131635189 + AluJ SINE Alu 1 312 0 2180 126 3 16 chr11 19148388 19148705 -131634848 + AluSq SINE Alu 1 313 0 1869 123 14 21 chr11 19148745 19149062 -131634491 - AluSx SINE Alu 0 315 1 7127 150 34 12 chr11 19149064 19150316 -131633237 - L1PBa LINE L1 -2879 3983 2654 2375 107 0 0 chr11 19150316 19150625 -131632928 + AluSx SINE Alu 1 309 -3 7127 150 34 12 chr11 19150625 19151638 -131631915 - L1PBa LINE L1 -4208 2654 1665 1183 144 11 16 chr11 19151638 19151825 -131631728 - AluSx SINE Alu -126 186 1 265 276 49 25 chr11 19152138 19152301 -131631252 - L1M4 LINE L1 -3733 2413 2247 1022 181 109 23 chr11 19152397 19152429 -131631124 - L1MB7 LINE L1 0 6184 6156 2773 131 46 10 chr11 19152429 19152842 -131630711 + MSTA LTR MaLR 1 428 0 1022 181 109 23 chr11 19152842 19153075 -131630478 - L1MB7 LINE L1 -28 6156 5896 2515 76 3 0 chr11 19153694 19153998 -131629555 - AluSp SINE Alu -8 305 1 244 292 10 0 chr11 19154542 19154638 -131628915 - L1M4 LINE L1 -1088 5058 4962 2314 153 67 48 chr11 19154638 19154683 -131628870 - MSTB LTR MaLR 0 426 383 2568 65 0 0 chr11 19154683 19154990 -131628563 + AluY SINE Alu 1 307 -4 1768 156 49 3 chr11 19154995 19155283 -131628270 + AluSx SINE Alu 1 301 -11 2314 153 67 48 chr11 19155283 19155649 -131627904 - MSTB LTR MaLR -46 380 1 791 275 21 21 chr11 19156082 19156318 -131627235 + MIR SINE MIR 8 243 -19 2321 105 0 0 chr11 19156494 19156800 -131626753 + AluSq SINE Alu 1 306 -7 1956 130 3 56 chr11 19156905 19157227 -131626326 + AluSx SINE Alu 1 305 -7 2110 115 3 47 chr11 19157232 19157554 -131625999 + AluSc SINE Alu 1 308 -1 21 36 0 0 chr11 19157658 19157686 -131625867 + AT_rich Low_complexity Low_complexity 1 28 0 667 163 81 0 chr11 19157714 19157837 -131625716 + L1MB3 LINE L1 6020 6152 -31 1590 180 12 43 chr11 19157859 19158181 -131625372 + AluJo SINE Alu 1 312 0 800 237 6 6 chr11 19158184 19158357 -131625196 + AluJo/FRAM SINE Alu 129 301 -11 2011 113 0 0 chr11 19159093 19159359 -131624194 - AluSx SINE Alu -10 302 37 2005 164 0 0 chr11 19159881 19160191 -131623362 - AluSx SINE Alu 0 312 3 22 0 0 0 chr11 19161273 19161295 -131622258 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr11 19161405 19161426 -131622127 + AT_rich Low_complexity Low_complexity 1 21 0 2013 128 0 33 chr11 19161598 19161902 -131621651 - AluSg SINE Alu -16 294 1 1662 174 0 20 chr11 19162094 19162388 -131621165 + AluJb SINE Alu 1 288 -24 467 250 0 0 chr11 19162765 19162869 -131620684 - L2 LINE L2 -2 3311 3208 205 322 76 25 chr11 19162852 19162970 -131620583 - L2 LINE L2 -860 2454 2331 * 811 212 97 23 chr11 19162991 19163208 -131620345 - MLT1K LTR MaLR -37 551 319 276 298 129 29 chr11 19163396 19163540 -131620013 - L2 LINE L2 -1730 1584 1419 2363 88 0 7 chr11 19163540 19163836 -131619717 - AluY SINE Alu -13 298 5 276 298 129 29 chr11 19163836 19163862 -131619691 - L2 LINE L2 -1895 1419 1397 206 342 62 67 chr11 19163870 19164173 -131619380 - L2 LINE L2 -2521 793 491 2167 139 3 0 chr11 19164173 19164475 -131619078 + AluSx SINE Alu 1 303 -9 206 342 62 67 chr11 19164475 19164607 -131618946 - L2 LINE L2 -2823 491 360 24 0 0 0 chr11 19164673 19164697 -131618856 + AT_rich Low_complexity Low_complexity 1 24 0 1917 116 18 7 chr11 19164709 19164986 -131618567 - AluSx SINE Alu -32 280 1 1303 126 61 26 chr11 19165631 19165862 -131617691 + AluJo SINE Alu 74 312 0 22 0 0 0 chr11 19166482 19166504 -131617049 + AT_rich Low_complexity Low_complexity 1 22 0 331 111 0 0 chr11 19167976 19168021 -131615532 + Alu SINE Alu 246 290 -12 1533 184 54 0 chr11 19168071 19168365 -131615188 + AluJo SINE Alu 1 310 -2 2278 114 0 0 chr11 19168650 19168948 -131614605 - AluSx SINE Alu -14 298 1 1792 150 10 20 chr11 19169142 19169442 -131614111 - AluJb SINE Alu -15 297 1 482 98 18 161 chr11 19169866 19169978 -131613575 + MER106B DNA MER1_type 27 122 -937 417 86 0 0 chr11 19169984 19170042 -131613511 + (TA)n Simple_repeat Simple_repeat 1 58 0 1124 140 0 17 chr11 19170043 19170221 -131613332 - AluSg/x SINE Alu -6 304 130 1450 164 75 4 chr11 19170228 19170509 -131613044 - AluSx SINE Alu -11 301 1 429 202 20 30 chr11 19170516 19170615 -131612938 + MER106A DNA MER1_type 139 236 0 417 97 0 56 chr11 19170643 19170715 -131612838 - MLT2A2 LTR ERVL 0 453 386 2290 91 3 13 chr11 19170867 19171174 -131612379 + AluSg SINE Alu 1 304 -6 1501 164 31 72 chr11 19171177 19171495 -131612058 + AluJb SINE Alu 1 305 -7 2135 99 0 63 chr11 19171514 19171655 -131611898 + AluSx SINE Alu 1 149 -163 2491 46 0 0 chr11 19171655 19171974 -131611579 + AluY SINE Alu 1 319 0 2135 99 0 63 chr11 19171974 19172163 -131611390 + AluSx SINE Alu 149 311 -1 2800 103 78 5 chr11 19172414 19172813 -131610740 + MSTC LTR MaLR 1 428 0 238 325 111 26 chr11 19172814 19172931 -131610622 - L2 LINE L2 -3 3269 3143 214 235 160 50 chr11 19172964 19173083 -131610470 - L3 LINE CR1 -108 1469 1338 307 284 300 21 chr11 19173615 19173732 -131609821 - MIR SINE MIR -17 245 162 2377 104 0 0 chr11 19173732 19174030 -131609523 + AluSp SINE Alu 1 298 -15 307 284 300 21 chr11 19174030 19174102 -131609451 - MIR SINE MIR -100 162 3 531 217 9 35 chr11 19174265 19174426 -131609127 - FLAM_A SINE Alu 0 161 4 1754 148 36 0 chr11 19174437 19174715 -131608838 - AluSx SINE Alu -18 294 7 32 0 0 0 chr11 19174725 19174757 -131608796 + AT_rich Low_complexity Low_complexity 1 32 0 2322 107 37 11 chr11 19175115 19175470 -131608083 - L1PA16 LINE L1 -1 6165 5802 1960 146 7 3 chr11 19175669 19175970 -131607583 + AluJb SINE Alu 1 302 -10 492 271 59 52 chr11 19176135 19176423 -131607130 - L2 LINE L2 -759 2555 2266 501 111 53 213 chr11 19176798 19176875 -131606678 - L1M4 LINE L1 -1383 4763 4675 2147 112 11 0 chr11 19176875 19177162 -131606391 + AluSx SINE Alu 1 290 -22 501 111 53 213 chr11 19177162 19177180 -131606373 - L1M4 LINE L1 -1471 4675 4656 1116 133 0 0 chr11 19177180 19177360 -131606193 + (TA)n Simple_repeat Simple_repeat 1 180 0 501 111 53 213 chr11 19177360 19177470 -131606083 - L1M4 LINE L1 -1490 4656 4590 * 887 235 76 41 chr11 19177450 19177634 -131605919 - L1M4c LINE L1 -4832 1552 1349 2204 118 0 3 chr11 19177634 19177938 -131605615 - AluSx SINE Alu -9 303 1 887 235 76 41 chr11 19177938 19178094 -131605459 - L1M4c LINE L1 -5035 1349 1200 207 0 0 0 chr11 19179130 19179153 -131604400 + (CAAAAA)n Simple_repeat Simple_repeat 3 25 0 2107 118 14 0 chr11 19179229 19179516 -131604037 - AluSx SINE Alu -14 298 8 2356 95 0 0 chr11 19179989 19180285 -131603268 - AluSx SINE Alu -16 296 1 1476 141 0 0 chr11 19180509 19180722 -131602831 - AluSg/x SINE Alu -13 299 87 2122 96 48 21 chr11 19180722 19181057 -131602496 - L1PBa LINE L1 -4336 2527 2184 1079 86 0 0 chr11 19181158 19181297 -131602256 - AluSp SINE Alu -174 139 1 2128 123 0 7 chr11 19181298 19181599 -131601954 - AluSq SINE Alu -10 303 5 229 324 0 0 chr11 19181638 19181712 -131601841 + (TATATG)n Simple_repeat Simple_repeat 6 79 0 1750 179 0 16 chr11 19181921 19182050 -131601503 + AluJo SINE Alu 9 139 -173 2368 75 10 0 chr11 19182050 19182343 -131601210 + AluY SINE Alu 1 296 -15 1750 179 0 16 chr11 19182343 19182520 -131601033 + AluJo SINE Alu 139 310 -2 1661 189 3 7 chr11 19182570 19182866 -131600687 + AluJo SINE Alu 1 295 -17 202 241 0 52 chr11 19182923 19182981 -131600572 - L2 LINE L2 0 3272 3218 308 221 127 44 chr11 19183556 19183714 -131599839 - Charlie7 DNA MER1_type 0 2612 2442 1862 162 7 0 chr11 19183715 19184012 -131599541 + AluJb SINE Alu 1 299 -13 2242 94 10 3 chr11 19184163 19184460 -131599093 + AluSx SINE Alu 1 299 -13 1492 174 0 4 chr11 19185280 19185516 -131598037 + AluJo SINE Alu 1 235 -77 2234 122 3 0 chr11 19185570 19185881 -131597672 + AluSx SINE Alu 1 312 0 3408 231 81 43 chr11 19185892 19186190 -131597363 - L2 LINE L2 -36 3277 2992 1639 154 18 28 chr11 19186190 19186476 -131597077 + AluJo SINE Alu 14 296 -16 3408 231 81 43 chr11 19186476 19187394 -131596159 - L2 LINE L2 -321 2992 2110 1688 178 13 16 chr11 19187394 19187703 -131595850 + AluJb SINE Alu 1 308 -4 1935 174 13 0 chr11 19187709 19188014 -131595539 + AluJb SINE Alu 1 309 -3 3408 231 81 43 chr11 19188014 19188189 -131595364 - L2 LINE L2 -1207 2106 1829 248 250 46 56 chr11 19188196 19188304 -131595249 + L1MC5 LINE L1 7200 7306 -655 1614 94 9 0 chr11 19188325 19188538 -131595015 - AluSg/x SINE Alu -12 298 84 317 265 122 10 chr11 19188800 19188912 -131594641 + MIR SINE MIR 30 154 -54 867 111 0 0 chr11 19189010 19189136 -131594417 - MER41B LTR ERV1 0 635 510 1932 147 0 3 chr11 19189151 19189444 -131594109 + AluSx SINE Alu 18 309 -3 3217 144 7 35 chr11 19189446 19189470 -131594083 - MER41B LTR ERV1 -87 548 525 2330 85 7 3 chr11 19189470 19189775 -131593778 + AluSc SINE Alu 3 308 -1 3217 144 7 35 chr11 19189775 19190297 -131593256 - MER41B LTR ERV1 -110 525 17 2379 115 0 0 chr11 19190301 19190614 -131592939 - AluSq SINE Alu 0 313 1 1240 189 18 14 chr11 19190615 19190642 -131592911 - HERVK14 LTR ERVK -157 5788 5761 3415 90 17 21 chr11 19190642 19191118 -131592435 - MER41-int LTR ERV1 0 5946 5473 1927 107 0 4 chr11 19191119 19191381 -131592172 - AluSg SINE Alu -4 306 46 1821 98 4 8 chr11 19191560 19191814 -131591739 - LTR8A LTR ERV1 -474 253 1 244 253 77 22 chr11 19191819 19191910 -131591643 - L2 LINE L2 -56 3257 3162 373 219 104 15 chr11 19192898 19193025 -131590528 - MIR SINE MIR -66 142 33 2227 121 0 0 chr11 19195943 19196241 -131587312 + AluSx SINE Alu 13 310 -2 229 384 76 20 chr11 19196928 19197178 -131586375 - L3b LINE CR1 -11 1572 1309 1447 228 156 22 chr11 19197182 19197670 -131585883 - MLT1H1 LTR MaLR 0 555 3 733 307 187 10 chr11 19197884 19198466 -131585087 - MER115 DNA AcHobo 0 693 1 515 99 44 0 chr11 19198860 19198951 -131584602 - AluSg/x SINE Alu -1 308 214 244 114 0 0 chr11 19198951 19198995 -131584558 + Alu SINE Alu 258 301 -1 2438 83 17 0 chr11 19199267 19199568 -131583985 - AluSg SINE Alu -4 306 1 1655 225 37 83 chr11 19199836 19200404 -131583149 - MLT1F LTR MaLR 0 542 1 2289 113 0 0 chr11 19201646 19201939 -131581614 + AluSx SINE Alu 1 293 -19 257 293 86 26 chr11 19202061 19202177 -131581376 + MER5B DNA MER1_type 1 123 -55 195 224 82 0 chr11 19202217 19202266 -131581287 - MER5B DNA MER1_type -124 54 2 833 167 0 0 chr11 19202269 19202401 -131581152 + FLAM_C SINE Alu 2 133 0 721 173 31 80 chr11 19204166 19204328 -131579225 - LTR8A LTR ERV1 0 727 574 1294 232 14 45 chr11 19204334 19204760 -131578793 - LTR8A LTR ERV1 -275 452 40 643 330 87 19 chr11 19204885 19205206 -131578347 + L3 LINE CR1 1231 1573 -4 254 246 31 92 chr11 19205304 19205434 -131578119 + MIR SINE MIR 18 139 -69 466 227 45 9 chr11 19205500 19205610 -131577943 - L2 LINE L2 0 3313 3200 450 303 62 6 chr11 19205770 19205932 -131577621 - MIR SINE MIR -90 172 2 326 322 119 11 chr11 19206064 19206241 -131577312 + L2 LINE L2 3025 3220 -52 552 295 60 36 chr11 19206252 19206362 -131577191 - L2 LINE L2 0 3313 3207 510 301 135 0 chr11 19206362 19206591 -131576962 + MIR SINE MIR 1 260 -2 552 295 60 36 chr11 19206591 19206731 -131576822 - L2 LINE L2 -106 3207 3057 997 298 45 62 chr11 19208139 19208475 -131575078 - MER115 DNA AcHobo -271 422 93 445 309 11 9 chr11 19209056 19209244 -131574309 - L2 LINE L2 0 3272 3026 654 275 87 10 chr11 19209823 19210030 -131573523 + MIR SINE MIR 38 260 -2 272 307 66 7 chr11 19210736 19210873 -131572680 + LTR7 LTR ERV1 304 448 -2 13616 124 11 44 chr11 19210877 19213653 -131569900 + HERVH LTR ERV1 2 2995 -4718 10701 113 30 39 chr11 19213632 19215423 -131568130 + HERVH LTR ERV1 3140 4915 -2798 * 1364 172 23 0 chr11 19215420 19215682 -131567871 + HERVH LTR ERV1 5749 6016 -1697 * 3567 114 5 11 chr11 19215675 19216235 -131567318 + HERVH LTR ERV1 7157 7713 0 1248 176 111 67 chr11 19216235 19216666 -131566887 + LTR7 LTR ERV1 1 450 0 2396 88 0 0 chr11 19216854 19217150 -131566403 + AluSx SINE Alu 1 296 -16 362 278 37 0 chr11 19217206 19217314 -131566239 + L2 LINE L2 3161 3272 0 180 403 0 0 chr11 19217411 19217483 -131566070 - L2 LINE L2 -1893 1421 1350 377 269 16 32 chr11 19217510 19217695 -131565858 + L1MC/D LINE L1 5613 5801 -441 1697 200 191 73 chr11 19217712 19217868 -131565685 - LTR41 LTR ERVL -6 767 631 2187 109 0 3 chr11 19217868 19218153 -131565400 + AluSx SINE Alu 12 295 -17 1697 200 191 73 chr11 19218153 19218682 -131564871 - LTR41 LTR ERVL -142 631 1 319 294 6 75 chr11 19218690 19218850 -131564703 + L1ME4a LINE L1 5686 5803 -439 1733 193 7 10 chr11 19218916 19219212 -131564341 - AluJo SINE Alu -17 295 1 492 308 106 75 chr11 19219362 19219470 -131564083 + L1ME4a LINE L1 5657 5760 -361 2200 119 6 3 chr11 19219470 19219782 -131563771 - AluSq SINE Alu 0 313 1 492 308 106 75 chr11 19219782 19219947 -131563606 + L1ME4a LINE L1 5760 5946 -175 2124 108 21 3 chr11 19219947 19220235 -131563318 - AluSx SINE Alu -19 293 1 492 308 106 75 chr11 19220235 19220308 -131563245 + L1ME4a LINE L1 5946 6015 -106 225 240 120 56 chr11 19220668 19220793 -131562760 + MIR3 SINE MIR 49 181 -27 193 237 0 0 chr11 19221197 19221235 -131562318 - L2 LINE L2 -2 3270 3233 227 164 91 150 chr11 19221314 19221487 -131562066 + L2 LINE L2 2870 3032 -240 649 250 38 5 chr11 19221576 19221760 -131561793 - MIR SINE MIR -31 231 42 363 360 29 0 chr11 19221808 19221947 -131561606 + L2 LINE L2 3171 3313 0 287 325 19 39 chr11 19221965 19222028 -131561525 + MIR SINE MIR 111 174 -88 189 74 0 0 chr11 19222028 19222055 -131561498 + (TA)n Simple_repeat Simple_repeat 1 27 0 2401 95 0 0 chr11 19222055 19222350 -131561203 - AluSx SINE Alu -17 295 1 287 325 19 39 chr11 19222350 19222439 -131561114 + MIR SINE MIR 172 261 -1 435 189 68 55 chr11 19222772 19222919 -131560634 + MIR3 SINE MIR 3 159 -49 2359 99 0 0 chr11 19223007 19223301 -131560252 - AluSx SINE Alu -18 294 1 317 239 135 25 chr11 19223499 19223662 -131559891 + L1ME4a LINE L1 5790 5970 -151 219 156 52 78 chr11 19223686 19223763 -131559790 + MIR SINE MIR 179 253 -9 247 204 0 0 chr11 19223874 19223923 -131559630 - L1MC4 LINE L1 -1339 6703 6655 222 233 0 0 chr11 19224599 19224642 -131558911 - L2 LINE L2 -9 3304 3262 354 165 35 24 chr11 19224661 19224746 -131558807 - L2 LINE L2 -2 3311 3226 200 326 11 56 chr11 19224913 19225002 -131558551 - MIR SINE MIR -50 212 128 292 195 171 12 chr11 19225154 19225236 -131558317 - MIR SINE MIR -121 141 47 538 232 35 0 chr11 19225857 19225999 -131557554 - MIR3 SINE MIR -3 205 59 1078 204 31 9 chr11 19226000 19226226 -131557327 - MIR SINE MIR -18 244 14 505 254 55 30 chr11 19226583 19226748 -131556805 - MIR SINE MIR -74 188 20 238 274 32 0 chr11 19227581 19227643 -131555910 + MIR SINE MIR 64 127 -135 382 285 155 0 chr11 19227643 19227800 -131555753 + MLT1G1 LTR MaLR 1 228 -367 2161 115 7 3 chr11 19227800 19228095 -131555458 + AluSq SINE Alu 3 298 -15 382 285 155 0 chr11 19228095 19228110 -131555443 + MLT1G1 LTR MaLR 228 239 -356 332 250 0 0 chr11 19228113 19228185 -131555368 + MIR SINE MIR 179 250 -12 258 239 14 42 chr11 19228716 19228787 -131554766 - MIR3 SINE MIR -29 179 111 243 281 53 44 chr11 19229137 19229251 -131554302 + MIR3 SINE MIR 73 187 -21 271 271 85 68 chr11 19229265 19229442 -131554111 + L2 LINE L2 2700 2879 -435 220 355 48 30 chr11 19231343 19231509 -131552044 + MER5B DNA MER1_type 3 171 -7 451 253 247 0 chr11 19232081 19232243 -131551310 + MIR SINE MIR 49 250 -12 213 65 0 0 chr11 19233015 19233046 -131550507 + (CAAAA)n Simple_repeat Simple_repeat 1 31 0 496 259 93 0 chr11 19239044 19239183 -131544370 + MIR3 SINE MIR 39 190 -18 183 42 0 0 chr11 19239798 19239822 -131543731 + (CA)n Simple_repeat Simple_repeat 1 24 0 314 272 25 93 chr11 19239831 19239993 -131543560 + MIR3 SINE MIR 8 158 -50 225 161 36 36 chr11 19240086 19240142 -131543411 + MIR3 SINE MIR 105 160 -48 314 256 12 12 chr11 19240144 19240230 -131543323 + MER5B DNA MER1_type 3 88 -90 492 271 41 47 chr11 19240394 19240564 -131542989 + LTR33 LTR ERVL 3 171 -350 451 204 174 35 chr11 19240628 19240685 -131542868 + LTR33 LTR ERVL 326 374 -147 2320 100 3 0 chr11 19240685 19240985 -131542568 - AluSx SINE Alu -9 303 3 451 204 174 35 chr11 19240985 19241099 -131542454 + LTR33 LTR ERVL 374 521 0 481 306 89 6 chr11 19241405 19241562 -131541991 - L2 LINE L2 0 3272 3103 2142 111 47 3 chr11 19241856 19242154 -131541399 + AluSq SINE Alu 1 311 -2 2517 83 0 0 chr11 19242503 19242803 -131540750 - AluY SINE Alu -11 300 1 835 109 101 13 chr11 19243636 19243794 -131539759 - LTR7 LTR ERV1 -232 218 1 501 151 0 0 chr11 19243951 19244037 -131539516 + CT-rich Low_complexity Low_complexity 2 87 0 1779 174 0 13 chr11 19244094 19244393 -131539160 - AluSx SINE Alu -17 295 1 2048 114 0 49 chr11 19244498 19244822 -131538731 + AluSx SINE Alu 1 308 -4 479 287 99 22 chr11 19244859 19245131 -131538422 + HAL1 LINE L1 1986 2278 -229 765 159 32 0 chr11 19245138 19245264 -131538289 + FRAM SINE Alu 26 155 -21 280 245 21 63 chr11 19245272 19245415 -131538138 + HAL1 LINE L1 2291 2427 -80 2064 125 16 38 chr11 19245474 19245793 -131537760 - AluSx SINE Alu 0 312 1 2046 71 0 84 chr11 19245794 19246104 -131537449 + MER4E LTR ERV1 483 766 0 2347 107 0 0 chr11 19246166 19246475 -131537078 + AluSc SINE Alu 1 309 0 337 239 34 11 chr11 19246480 19246568 -131536985 + ORSL DNA AcHobo 186 275 0 911 286 38 45 chr11 19246817 19247236 -131536317 + L1MC/D LINE L1 5375 5790 -2018 2194 122 3 0 chr11 19247240 19247551 -131536002 + AluSx SINE Alu 1 312 0 1691 161 21 114 chr11 19247676 19247972 -131535581 - MLT1B LTR MaLR 0 390 68 2152 133 0 13 chr11 19247972 19248280 -131535273 - AluSx SINE Alu -8 304 1 1691 161 21 114 chr11 19248280 19248306 -131535247 - MLT1B LTR MaLR -322 68 41 1790 144 50 7 chr11 19248306 19248584 -131534969 - AluSx SINE Alu -22 290 1 1691 161 21 114 chr11 19248584 19248690 -131534863 - MLT1B LTR MaLR -349 41 1 1973 114 4 0 chr11 19249281 19249545 -131534008 - AluSq SINE Alu -48 265 1 377 130 428 0 chr11 19249675 19249766 -131533787 - MER53 DNA DNA 0 189 138 1763 138 10 58 chr11 19249766 19250057 -131533496 + AluJb SINE Alu 1 277 -35 377 130 428 0 chr11 19250057 19250096 -131533457 - MER53 DNA DNA -51 138 3 268 333 145 11 chr11 19250483 19250669 -131532884 + MIR SINE MIR 50 260 -2 1085 109 63 11 chr11 19251007 19251181 -131532372 - MLT1B LTR MaLR 0 390 208 845 103 152 0 chr11 19251174 19251319 -131532234 - LTR24C LTR ERV1 -457 178 12 * 2832 7 0 0 chr11 19251372 19251672 -131531881 - AluYa5 SINE Alu -11 300 1 458 201 130 54 chr11 19251683 19251867 -131531686 - L1MB8 LINE L1 -2 6176 5979 2223 104 10 0 chr11 19254396 19254685 -131528868 + AluSq SINE Alu 5 296 -17 2038 139 3 23 chr11 19254873 19255176 -131528377 - AluSx SINE Alu -15 297 1 1616 125 79 59 chr11 19255422 19255465 -131528088 - AluSx SINE Alu -2 310 269 186 43 0 0 chr11 19255465 19255488 -131528065 + (TTTTC)n Simple_repeat Simple_repeat 3 25 0 1616 125 79 59 chr11 19255488 19255748 -131527805 - AluSx SINE Alu -43 269 1 711 104 0 19 chr11 19255990 19256096 -131527457 + AluSg/x SINE Alu 205 308 -4 385 232 89 36 chr11 19256159 19256271 -131527282 - MIR SINE MIR -131 131 14 2221 96 7 3 chr11 19256271 19256564 -131526989 - AluY SINE Alu -16 295 2 2015 155 0 16 chr11 19256629 19256946 -131526607 - AluJb SINE Alu 0 312 1 836 108 108 0 chr11 19257156 19257276 -131526277 + AluSq/x SINE Alu 1 133 -179 319 167 33 0 chr11 19257359 19257419 -131526134 - AluSp SINE Alu -108 195 134 2142 113 3 10 chr11 19257419 19257720 -131525833 - AluSg SINE Alu -11 299 1 1268 118 0 0 chr11 19257731 19257901 -131525652 - AluYa5 SINE Alu -9 302 133 2564 66 0 7 chr11 19257901 19258204 -131525349 - AluY SINE Alu -10 301 1 26874 110 33 55 chr11 19258204 19259016 -131524537 - MER41B-int LTR ERV1 -743 5203 4375 2125 126 0 0 chr11 19259016 19259322 -131524231 + AluSx SINE Alu 1 306 0 26874 110 33 55 chr11 19259322 19260057 -131523496 - MER41B-int LTR ERV1 -1571 4375 3625 2198 118 10 3 chr11 19260057 19260363 -131523190 - AluSg SINE Alu -2 308 1 2195 105 3 10 chr11 19260368 19260664 -131522889 - AluSx SINE Alu -18 294 1 26874 110 33 55 chr11 19260664 19260808 -131522745 - MER41B-int LTR ERV1 -2325 3621 3475 2413 97 0 0 chr11 19260808 19261106 -131522447 - AluSq SINE Alu -15 298 1 26874 110 33 55 chr11 19261106 19263890 -131519663 - MER41B-int LTR ERV1 -2471 3475 817 1041 120 0 115 chr11 19263891 19264091 -131519462 + AluSp SINE Alu 137 313 0 3775 130 48 38 chr11 19264091 19264809 -131518744 - MER41B-int LTR ERV1 -5119 827 1 3665 130 37 64 chr11 19264809 19265259 -131518294 - MER41B LTR ERV1 0 635 207 2217 139 0 0 chr11 19265259 19265568 -131517985 - AluSx SINE Alu -3 309 1 3665 130 37 64 chr11 19265568 19265770 -131517783 - MER41B LTR ERV1 -428 207 1 2290 94 7 0 chr11 19266388 19266674 -131516879 + AluSp SINE Alu 1 288 -25 369 0 0 0 chr11 19267249 19267290 -131516263 + (CA)n Simple_repeat Simple_repeat 2 42 0 1934 112 31 7 chr11 19267419 19267706 -131515847 + AluSx SINE Alu 1 294 -18 748 197 0 0 chr11 19267747 19267879 -131515674 - FLAM_C SINE Alu 0 133 2 3988 131 34 43 chr11 19267946 19268152 -131515401 - MER50 LTR ERV1 -51 683 477 2048 125 4 0 chr11 19268152 19268453 -131515100 - AluSx SINE Alu 0 302 1 3988 131 34 43 chr11 19268453 19268926 -131514627 - MER50 LTR ERV1 -257 477 9 713 142 0 0 chr11 19268935 19269041 -131514512 - FLAM_C SINE Alu -36 107 2 2362 81 3 3 chr11 19269064 19269361 -131514192 + AluSg SINE Alu 1 297 -13 2013 109 0 85 chr11 19269369 19269698 -131513855 + AluSx SINE Alu 1 301 -11 443 286 56 19 chr11 19270098 19270259 -131513294 + MIR SINE MIR 90 256 -6 2278 112 0 0 chr11 19270263 19270559 -131512994 + AluSc SINE Alu 1 296 -13 423 297 55 22 chr11 19270644 19270826 -131512727 + MER5A DNA MER1_type 2 189 0 2090 133 0 0 chr11 19270917 19271202 -131512351 - AluSx SINE Alu -27 285 1 2347 104 0 0 chr11 19271452 19271759 -131511794 + AluSg SINE Alu 1 307 -3 413 305 58 46 chr11 19271806 19272154 -131511399 - L2 LINE L2 -410 2904 2553 2159 99 0 54 chr11 19272303 19272617 -131510936 + AluSq SINE Alu 1 297 -16 2354 66 42 0 chr11 19272952 19273240 -131510313 + AluSx SINE Alu 1 300 -12 250 279 238 7 chr11 19273270 19273417 -131510136 - L3 LINE CR1 -601 976 796 1407 149 115 53 chr11 19273496 19273818 -131509735 + MLT1A2 LTR MaLR 1 342 -32 3607 140 37 3 chr11 19273818 19274388 -131509165 - Tigger2 DNA MER2_type 0 2718 2130 2120 114 0 10 chr11 19274388 19274523 -131509030 + AluSx SINE Alu 1 136 -186 2391 70 0 10 chr11 19274523 19274824 -131508729 + AluSc SINE Alu 1 298 -11 2120 114 0 10 chr11 19274824 19275013 -131508540 + AluSx SINE Alu 136 322 0 1560 193 60 3 chr11 19275020 19275367 -131508186 + L1ME3A LINE L1 5644 6010 -160 1277 120 8 68 chr11 19275501 19275630 -131507923 - Tigger2 DNA MER2_type -2482 236 128 2343 119 0 0 chr11 19275630 19275942 -131507611 - AluSx SINE Alu 0 312 1 1277 120 8 68 chr11 19275942 19276062 -131507491 - Tigger2 DNA MER2_type -2590 128 2 434 301 236 0 chr11 19276344 19276543 -131507010 + MIR SINE MIR 7 252 -10 306 245 115 67 chr11 19276678 19276690 -131506863 + L2 LINE L2 3096 3106 -207 1748 152 50 3 chr11 19276690 19276987 -131506566 - AluJb SINE Alu -1 311 1 306 245 115 67 chr11 19276987 19277182 -131506371 + L2 LINE L2 3106 3313 0 2102 92 3 7 chr11 19277209 19277516 -131506037 + AluY SINE Alu 1 306 0 244 246 14 0 chr11 19277516 19277585 -131505968 - MIR SINE MIR -94 114 45 1550 146 25 29 chr11 19278009 19278327 -131505226 + LTR8 LTR ERV1 256 590 -137 286 204 80 105 chr11 19278399 19278487 -131505066 - L1MC/D LINE L1 -2332 5476 5392 2205 121 0 3 chr11 19278487 19278801 -131504752 - AluSq SINE Alu 0 313 1 286 204 80 105 chr11 19278801 19278874 -131504679 - L1MC/D LINE L1 -2416 5392 5319 236 229 0 0 chr11 19279092 19279140 -131504413 + MER53 DNA DNA 1 48 -141 424 164 410 0 chr11 19279143 19279277 -131504276 + MER53 DNA DNA 1 189 0 537 196 214 32 chr11 19279490 19279600 -131503953 - MER113 DNA MER1_type? -261 260 171 2103 83 97 0 chr11 19279600 19279878 -131503675 + AluSg SINE Alu 1 305 -5 537 196 214 32 chr11 19279878 19279987 -131503566 - MER113 DNA MER1_type? -350 171 1 1935 168 96 53 chr11 19280052 19280522 -131503031 - LTR2B LTR ERV1 0 490 1 457 159 0 0 chr11 19280624 19280693 -131502860 - LTR8 LTR ERV1 0 691 623 2059 106 4 4 chr11 19280694 19280969 -131502584 + AluSg SINE Alu 1 275 -35 249 28 0 0 chr11 19280996 19281032 -131502521 + MER41A LTR ERV1 429 464 -90 625 210 0 17 chr11 19281061 19281180 -131502373 - LTR8 LTR ERV1 -54 637 521 192 97 0 0 chr11 19282740 19282771 -131500782 + (TTTTA)n Simple_repeat Simple_repeat 1 31 0 42268 60 7 2 chr11 19282773 19288863 -131494690 - L1PA5 LINE L1 -27 6127 11 3085 117 14 92 chr11 19288876 19289449 -131494104 - LTR8 LTR ERV1 -163 528 1 3814 133 46 7 chr11 19289459 19290070 -131493483 + MER41B LTR ERV1 1 635 0 1039 196 18 40 chr11 19290273 19290409 -131493144 + AluJo SINE Alu 1 133 -179 1961 142 0 4 chr11 19290409 19290717 -131492836 + AluSx SINE Alu 3 309 0 1039 196 18 40 chr11 19290717 19290804 -131492749 + AluJo SINE Alu 133 220 -92 345 49 0 0 chr11 19290804 19290845 -131492708 + AluSq/x SINE Alu 86 126 -177 274 156 23 8 chr11 19290945 19290999 -131492554 - Alu SINE Alu -257 43 1 388 213 120 47 chr11 19291010 19291160 -131492393 + L1MC5 LINE L1 7327 7487 -474 1845 137 4 11 chr11 19291232 19291510 -131492043 + AluJo SINE Alu 21 296 -16 1528 162 107 21 chr11 19291510 19291838 -131491715 + L1MB8 LINE L1 5819 6174 -4 479 161 174 7 chr11 19291865 19292014 -131491539 + L1MC5 LINE L1 7521 7694 -267 1736 119 36 46 chr11 19292436 19292738 -131490815 + AluJb SINE Alu 3 301 -11 188 295 0 16 chr11 19292745 19292806 -131490747 - MIR3 SINE MIR -4 204 145 430 233 69 31 chr11 19292857 19293016 -131490537 + MER103 DNA DNA 1 165 -1 190 237 0 0 chr11 19293074 19293112 -131490441 - MIR3 SINE MIR -49 159 122 1537 160 97 3 chr11 19293923 19294223 -131489330 - MER7A DNA MER2_type 0 346 21 1346 172 57 0 chr11 19294467 19294711 -131488842 + AluJb SINE Alu 42 299 -13 270 275 46 0 chr11 19295402 19295511 -131488042 + MIR SINE MIR 149 262 0 356 289 114 13 chr11 19295553 19295702 -131487851 - L3 LINE CR1 -88 1489 1326 223 342 92 8 chr11 19295702 19295822 -131487731 - L2 LINE L2 -20 3252 3123 21 0 0 0 chr11 19296168 19296189 -131487364 + AT_rich Low_complexity Low_complexity 1 21 0 305 337 21 0 chr11 19296758 19296853 -131486700 + L1ME LINE L1 21 117 -5953 1822 144 10 39 chr11 19296962 19297268 -131486285 - AluSq SINE Alu -16 297 1 1739 173 13 23 chr11 19297463 19297763 -131485790 + AluJo SINE Alu 3 299 -13 2074 122 7 13 chr11 19298033 19298337 -131485216 + AluSx SINE Alu 1 302 -10 198 167 0 133 chr11 19299565 19299625 -131483928 + L3b LINE CR1 1432 1483 -100 * 219 346 0 58 chr11 19299575 19299679 -131483874 - MER5A DNA MER1_type -32 157 60 274 308 154 10 chr11 19300043 19300147 -131483406 + L2 LINE L2 3148 3266 -6 821 128 0 0 chr11 19300256 19300373 -131483180 + AluJo/FLAM SINE Alu 1 117 -185 303 130 103 30 chr11 19300373 19300557 -131482996 + AluJ SINE Alu 46 287 -15 2028 136 19 23 chr11 19300568 19300877 -131482676 + AluSx SINE Alu 1 308 -4 1322 68 0 0 chr11 19301812 19301975 -131481578 + AluY SINE Alu 136 298 -13 1557 153 127 4 chr11 19302409 19302677 -131480876 - AluJb SINE Alu -11 301 1 21 0 0 0 chr11 19302713 19302734 -131480819 + AT_rich Low_complexity Low_complexity 1 21 0 2262 68 35 66 chr11 19306355 19306419 -131477134 + THE1A LTR MaLR 1 65 -290 186 43 0 0 chr11 19306419 19306442 -131477111 + (TG)n Simple_repeat Simple_repeat 2 24 0 2262 68 35 66 chr11 19306442 19306611 -131476942 + THE1A LTR MaLR 65 222 -133 2223 100 17 3 chr11 19306611 19306910 -131476643 + AluSq SINE Alu 1 303 -10 2262 68 35 66 chr11 19306910 19307041 -131476512 + THE1A LTR MaLR 222 355 0 1182 64 0 0 chr11 19308334 19308475 -131475078 - AluSg/x SINE Alu -8 302 162 21 36 0 0 chr11 19308993 19309021 -131474532 + AT_rich Low_complexity Low_complexity 1 28 0 777 201 5 22 chr11 19309200 19309384 -131474169 + LTR28 LTR ERV1 1 181 -839 299 194 15 0 chr11 19309403 19309470 -131474083 + LTR1 LTR ERV1 119 186 -599 * 1212 211 20 32 chr11 19309444 19309785 -131473768 + LTR27 LTR ERV1 300 636 0 6741 20 9 1 chr11 19309889 19310674 -131472879 + L1PA4 LINE L1 5364 6154 -1 777 161 31 0 chr11 19310934 19311064 -131472489 - AluJo SINE Alu -177 135 2 2205 85 32 0 chr11 19312243 19312525 -131471028 + AluSc SINE Alu 1 291 -18 896 205 18 6 chr11 19312627 19312798 -131470755 - FAM SINE Alu -2 173 1 1754 221 86 29 chr11 19314581 19315092 -131468461 + MER77 LTR ERV1 58 597 -8 979 76 0 0 chr11 19319219 19319338 -131464215 + AluY SINE Alu 178 296 -15 1762 123 84 0 chr11 19319581 19319910 -131463643 + AluSx SINE Alu 1 351 0 1234 193 157 0 chr11 19319950 19320199 -131463354 + AluJb SINE Alu 1 288 -24 2015 116 26 20 chr11 19320209 19320511 -131463042 + AluSx SINE Alu 2 305 -7 3326 251 151 11 chr11 19321515 19322600 -131460953 - L2 LINE L2 -386 2928 1692 451 159 16 10 chr11 19322600 19322800 -131460753 + (TA)n Simple_repeat Simple_repeat 1 201 0 2336 104 0 7 chr11 19322802 19323110 -131460443 - AluSg SINE Alu -4 306 1 5800 126 45 12 chr11 19323117 19324210 -131459343 - L1MA4A LINE L1 -4 6299 5128 2154 105 10 24 chr11 19324210 19324506 -131459047 - AluSx SINE Alu -20 292 1 5800 126 45 12 chr11 19324506 19325166 -131458387 - L1MA4A LINE L1 -1175 5128 4492 709 296 120 8 chr11 19325193 19325443 -131458110 - L2 LINE L2 -1636 1678 1401 265 171 60 162 chr11 19326507 19326624 -131456929 - L3 LINE CR1 -17 1560 1456 411 296 101 38 chr11 19326712 19326769 -131456784 - L3 LINE CR1 -314 1263 1211 2472 80 0 0 chr11 19326769 19327070 -131456483 - AluY SINE Alu -10 301 1 411 296 101 38 chr11 19327070 19327171 -131456382 - L3 LINE CR1 -366 1211 1095 252 336 251 22 chr11 19327222 19327320 -131456233 - L3 LINE CR1 -823 754 680 1869 163 13 3 chr11 19327320 19327620 -131455933 + AluJb SINE Alu 1 303 -9 252 336 251 22 chr11 19327620 19328107 -131455446 - L3 LINE CR1 -897 680 35 320 302 12 0 chr11 19328330 19328416 -131455137 - L3 LINE CR1 -70 1507 1421 1691 156 15 0 chr11 19328659 19328922 -131454631 - AluJb SINE Alu -16 296 30 2084 102 3 39 chr11 19329222 19329527 -131454026 - AluSx SINE Alu -18 294 1 2163 118 3 0 chr11 19329808 19330095 -131453458 + AluSg SINE Alu 1 288 -22 259 192 0 0 chr11 19330827 19330879 -131452674 + Alu SINE Alu 251 302 0 2160 90 21 0 chr11 19331217 19331507 -131452046 + AluSx SINE Alu 1 296 -16 1272 99 50 11 chr11 19331745 19331927 -131451626 - AluSx SINE Alu -123 189 1 23 33 0 0 chr11 19333226 19333256 -131450297 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr11 19333520 19333549 -131450004 + AT_rich Low_complexity Low_complexity 1 29 0 2047 162 0 0 chr11 19333575 19333877 -131449676 + AluSx SINE Alu 1 302 -10 1098 133 43 179 chr11 19334022 19334369 -131449184 + AluJb SINE Alu 1 300 -2 412 212 106 0 chr11 19334616 19334701 -131448852 - FLAM_A SINE Alu -28 114 21 1879 166 6 3 chr11 19335074 19335417 -131448136 - L1MB7 LINE L1 -21 6163 5820 1430 115 0 5 chr11 19335562 19335753 -131447800 + AluSq SINE Alu 1 190 -123 412 206 0 16 chr11 19335753 19335873 -131447680 - L1MDb LINE L1 -4769 1534 1029 2263 102 7 13 chr11 19336163 19336467 -131447086 - AluSx SINE Alu -10 302 1 958 65 41 0 chr11 19336791 19336914 -131446639 + AluSg/x SINE Alu 175 302 -8 598 101 20 0 chr11 19339339 19339438 -131444115 - AluSg/x SINE Alu -2 308 208 38 51 0 0 chr11 19339632 19339691 -131443862 + AT_rich Low_complexity Low_complexity 1 59 0 285 29 0 0 chr11 19339691 19339725 -131443828 + (TA)n Simple_repeat Simple_repeat 1 34 0 2253 105 0 3 chr11 19339825 19340119 -131443434 - AluSq SINE Alu -20 293 1 1639 172 0 8 chr11 19340131 19340399 -131443154 - AluJb SINE Alu -45 267 2 644 189 0 0 chr11 19340759 19340870 -131442683 + FLAM_A SINE Alu 16 126 -16 260 370 74 9 chr11 19341349 19341457 -131442096 + L2 LINE L2 3150 3264 -8 1254 139 0 0 chr11 19341979 19342151 -131441402 - AluJo SINE Alu -12 300 129 2495 70 0 0 chr11 19342155 19342453 -131441100 - AluY SINE Alu -13 298 1 444 237 96 22 chr11 19342647 19342782 -131440771 + MIR SINE MIR 118 262 0 1950 102 48 110 chr11 19344331 19344488 -131439065 - L1MA4 LINE L1 -33 6267 6102 978 144 0 0 chr11 19344488 19344620 -131438933 - AluJo SINE Alu -169 133 2 1950 102 48 110 chr11 19344620 19344862 -131438691 - L1MA4 LINE L1 -198 6102 5893 242 118 0 0 chr11 19344950 19344984 -131438569 - L1MA4 LINE L1 -377 5926 5893 1670 108 170 4 chr11 19345121 19345380 -131438173 - AluSx SINE Alu 0 302 1 898 186 90 16 chr11 19345391 19345579 -131437974 - AluJb SINE Alu -26 286 85 869 267 200 14 chr11 19346052 19346543 -131437010 + L1MC4a LINE L1 5329 5910 -1898 648 140 21 0 chr11 19346585 19346678 -131436875 - FLAM_A SINE Alu -14 128 34 305 239 77 54 chr11 19346702 19346832 -131436721 + L1ME4a LINE L1 5986 6118 -3 2025 107 4 0 chr11 19347283 19347555 -131435998 + AluSc SINE Alu 1 273 -36 2143 106 3 20 chr11 19348324 19348626 -131434927 - AluSg SINE Alu -12 298 2 2164 118 16 0 chr11 19348753 19349058 -131434495 - AluSq SINE Alu -3 310 1 1992 137 0 0 chr11 19349081 19349385 -131434168 - AluSx SINE Alu 0 309 6 1551 122 33 116 chr11 19349705 19350040 -131433513 - AluYb8 SINE Alu -11 307 1 489 352 116 0 chr11 19350291 19350545 -131433008 - L2 LINE L2 -201 3071 2785 358 257 0 0 chr11 19350719 19350793 -131432760 - MIR SINE MIR 0 262 189 612 255 84 11 chr11 19350793 19351024 -131432529 + MIR SINE MIR 8 262 0 218 339 54 39 chr11 19351497 19351627 -131431926 + L2 LINE L2 3141 3272 0 318 198 223 8 chr11 19351905 19352026 -131431527 + L1MC4a LINE L1 5757 5903 -1905 243 305 156 7 chr11 19352501 19352655 -131430898 + MIR3 SINE MIR 9 185 -23 21 71 0 0 chr11 19353258 19353300 -131430253 + AT_rich Low_complexity Low_complexity 1 42 0 2360 103 0 3 chr11 19353554 19353864 -131429689 - AluSc SINE Alu 0 309 1 1821 152 17 3 chr11 19354989 19355278 -131428275 - AluJo SINE Alu -19 293 1 22 35 0 0 chr11 19355535 19355564 -131427989 + AT_rich Low_complexity Low_complexity 1 29 0 231 167 0 0 chr11 19355586 19355628 -131427925 + (TA)n Simple_repeat Simple_repeat 1 42 0 289 168 32 84 chr11 19355630 19355725 -131427828 - L1MC4 LINE L1 -1339 6703 6614 2433 71 0 3 chr11 19355748 19356044 -131427509 - AluSc SINE Alu -14 295 1 2187 109 0 0 chr11 19356110 19356418 -131427135 - AluSx SINE Alu 0 308 1 2046 126 13 3 chr11 19357161 19357470 -131426083 - AluSx SINE Alu 0 312 1 1934 128 14 7 chr11 19357917 19358206 -131425347 + AluSx SINE Alu 1 291 -21 22 70 0 0 chr11 19358292 19358335 -131425218 + AT_rich Low_complexity Low_complexity 1 43 0 650 144 0 48 chr11 19358598 19358702 -131424851 - FLAM_A SINE Alu -18 124 26 2321 93 3 3 chr11 19359100 19359400 -131424153 - AluSp SINE Alu -13 300 1 180 200 22 22 chr11 19359468 19359513 -131424040 + L3 LINE CR1 361 405 -1172 763 238 126 10 chr11 19359666 19359872 -131423681 - MIR SINE MIR -30 232 3 230 282 84 0 chr11 19359872 19359942 -131423611 - MIR3 SINE MIR -40 168 93 2286 106 0 7 chr11 19360088 19360391 -131423162 - AluSx SINE Alu -11 301 1 2330 99 0 6 chr11 19360481 19360794 -131422759 - AluSq SINE Alu -2 311 1 749 208 0 0 chr11 19360834 19360959 -131422594 - FLAM_A SINE Alu -8 125 1 218 376 0 35 chr11 19361128 19361213 -131422340 + L2 LINE L2 3154 3235 -37 269 256 169 50 chr11 19361473 19361633 -131421920 + MER5A DNA MER1_type 1 179 -10 2203 106 14 0 chr11 19361819 19362112 -131421441 + AluSg SINE Alu 1 297 -13 343 294 43 0 chr11 19362147 19362239 -131421314 - L2 LINE L2 -8 3264 3169 198 373 13 0 chr11 19362248 19362323 -131421230 + MIR SINE MIR 1 76 -186 2135 108 6 19 chr11 19362935 19363249 -131420304 + AluSx SINE Alu 1 310 -2 2039 131 17 0 chr11 19363252 19363543 -131420010 + AluSx SINE Alu 1 296 -16 2389 86 0 7 chr11 19363546 19363849 -131419704 + AluSc SINE Alu 1 301 -8 1244 134 0 0 chr11 19363849 19364028 -131419525 + AluSg/x SINE Alu 134 312 0 2676 163 92 0 chr11 19364134 19364657 -131418896 + L1MB5 LINE L1 5587 6157 -17 248 29 0 0 chr11 19364766 19364801 -131418752 - Alu SINE Alu -7 296 262 2447 71 3 3 chr11 19364912 19365223 -131418330 - AluY SINE Alu 0 311 1 31 26 0 0 chr11 19365251 19365289 -131418264 + AT_rich Low_complexity Low_complexity 1 38 0 1202 160 0 0 chr11 19365324 19365499 -131418054 - FAM SINE Alu 0 175 1 429 260 93 27 chr11 19365546 19365696 -131417857 - MIR SINE MIR -98 164 5 517 256 0 16 chr11 19365829 19365950 -131417603 + MIR3 SINE MIR 82 200 -8 1245 122 35 0 chr11 19366279 19366451 -131417102 + AluSx SINE Alu 1 178 -134 2041 132 3 3 chr11 19366625 19366914 -131416639 - AluSq SINE Alu -22 291 3 2251 125 0 0 chr11 19366929 19367241 -131416312 - AluSx SINE Alu 0 312 1 701 167 30 38 chr11 19367717 19367833 -131415720 + FLAM_C SINE Alu 1 117 -185 441 0 0 0 chr11 19367833 19367882 -131415671 + (CA)n Simple_repeat Simple_repeat 2 50 0 701 167 30 38 chr11 19367882 19367897 -131415656 + FLAM_C SINE Alu 117 131 -171 334 248 165 15 chr11 19368054 19368187 -131415366 + L1MC/D LINE L1 5407 5559 -2249 471 250 146 28 chr11 19368429 19368471 -131415082 - MER5A DNA MER1_type -18 171 135 1988 133 7 0 chr11 19368471 19368764 -131414789 + AluSx SINE Alu 1 295 -17 471 250 146 28 chr11 19368764 19368865 -131414688 - MER5A DNA MER1_type -54 135 11 618 285 35 12 chr11 19368879 19369051 -131414502 + MIR SINE MIR 21 196 -66 1605 140 4 20 chr11 19369054 19369304 -131414249 + AluSx SINE Alu 1 246 -66 2161 93 38 3 chr11 19369304 19369593 -131413960 + AluSx SINE Alu 1 300 -12 487 83 0 0 chr11 19369595 19369655 -131413898 + AluSx SINE Alu 236 295 -17 227 273 0 0 chr11 19369657 19369712 -131413841 + MIR SINE MIR 202 256 -6 1703 135 23 63 chr11 19369837 19370011 -131413542 - AluJb SINE Alu -21 291 133 2263 103 0 0 chr11 19370011 19370303 -131413250 + AluSx SINE Alu 9 300 -12 1703 135 23 63 chr11 19370303 19370431 -131413122 - AluJb SINE Alu -179 133 1 1600 201 7 0 chr11 19370509 19370807 -131412746 + AluJo SINE Alu 1 300 -12 1765 163 3 3 chr11 19371052 19371346 -131412207 + AluJb SINE Alu 1 294 -18 2315 113 0 0 chr11 19371466 19371768 -131411785 + AluSx SINE Alu 1 302 -10 1844 141 38 0 chr11 19373290 19373580 -131409973 + AluSx SINE Alu 1 301 -11 2316 110 0 0 chr11 19373810 19374118 -131409435 - AluSx SINE Alu -4 308 1 719 207 8 0 chr11 19374463 19374584 -131408969 + FRAM SINE Alu 45 166 -10 1177 164 141 11 chr11 19374841 19375110 -131408443 - L1MC4 LINE L1 0 8042 7739 337 309 65 0 chr11 19375132 19375255 -131408298 + MIR SINE MIR 76 206 -56 292 198 0 172 chr11 19375385 19375501 -131408052 - Charlie8 DNA MER1_type -3 2414 232 195 129 0 0 chr11 19375526 19375557 -131407996 + (CAAAA)n Simple_repeat Simple_repeat 4 34 0 234 245 19 0 chr11 19375626 19375679 -131407874 + MIR3 SINE MIR 151 204 -4 1497 183 11 11 chr11 19375786 19376071 -131407482 + AluJo SINE Alu 5 289 -23 2343 89 0 0 chr11 19376820 19377112 -131406441 - AluY SINE Alu -19 292 1 706 264 114 62 chr11 19377229 19377634 -131405919 + L1ME4a LINE L1 5479 5904 -217 476 245 6 37 chr11 19377618 19377781 -131405772 + L1ME3A LINE L1 5793 5950 -220 * 1828 184 3 0 chr11 19378383 19378693 -131404860 + AluJb SINE Alu 1 311 -1 2003 127 27 3 chr11 19378989 19379288 -131404265 + AluSx SINE Alu 1 306 -6 1169 191 126 9 chr11 19379641 19379871 -131403682 + AluJo SINE Alu 39 295 -17 2422 83 0 0 chr11 19379875 19380177 -131403376 + AluY SINE Alu 3 304 -7 2336 94 3 0 chr11 19380441 19380739 -131402814 + AluSp SINE Alu 1 299 -14 494 217 46 66 chr11 19380750 19380902 -131402651 - MIR SINE MIR 0 262 114 251 129 81 48 chr11 19381279 19381341 -131402212 + CT-rich Low_complexity Low_complexity 2 65 0 2165 109 14 0 chr11 19382071 19382355 -131401198 - AluSx SINE Alu -23 289 2 253 286 129 2 chr11 19382670 19382778 -131400775 + MIR SINE MIR 50 171 -62 197 246 33 0 chr11 19382826 19382887 -131400666 + L2 LINE L2 3162 3224 -48 457 301 60 18 chr11 19383539 19383705 -131399848 + MIR SINE MIR 20 192 -70 1021 114 13 13 chr11 19383767 19383925 -131399628 + HUERS-P1 LTR ERV1 6106 6263 0 3997 106 3 44 chr11 19383925 19384189 -131399364 + LTR8 LTR ERV1 1 274 -417 1813 116 98 11 chr11 19384189 19384488 -131399065 + AluSx SINE Alu 1 312 0 3997 106 3 44 chr11 19384488 19384819 -131398734 + LTR8 LTR ERV1 274 617 -74 2034 121 0 3 chr11 19384819 19385101 -131398452 + AluSx SINE Alu 1 281 -31 192 40 0 0 chr11 19385101 19385126 -131398427 + (CCAA)n Simple_repeat Simple_repeat 1 25 0 3997 106 3 44 chr11 19385126 19385140 -131398413 + LTR8 LTR ERV1 574 587 -104 221 75 25 0 chr11 19385141 19385181 -131398372 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 266 171 0 0 chr11 19385463 19385504 -131398049 + MLT1A1 LTR MaLR 113 153 -212 2435 85 0 7 chr11 19385506 19385813 -131397740 + AluSx SINE Alu 1 305 -7 2116 161 34 131 chr11 19385915 19386474 -131397079 + MLT1D LTR MaLR 1 505 0 2321 82 0 3 chr11 19386793 19387085 -131396468 - AluSg SINE Alu -19 291 1 380 277 71 71 chr11 19387092 19387330 -131396223 - MIR SINE MIR -10 252 15 265 261 81 27 chr11 19387569 19387680 -131395873 + MIR SINE MIR 75 191 -71 1448 188 57 48 chr11 19387707 19388079 -131395474 + L1MB7 LINE L1 4351 4725 -1421 2325 157 32 39 chr11 19388092 19388524 -131395029 + L1MB7 LINE L1 5466 5894 -284 295 139 0 0 chr11 19388525 19388568 -131394985 + MER49 LTR ERV1 789 831 -92 529 229 20 33 chr11 19388592 19388745 -131394808 + L1MB7 LINE L1 5874 6024 -160 2226 91 14 0 chr11 19388799 19389095 -131394458 + AluSq SINE Alu 2 301 -12 2096 118 20 0 chr11 19389316 19389612 -131393941 + AluSx SINE Alu 1 302 -10 531 88 0 0 chr11 19390322 19390390 -131393163 - AluJb SINE Alu -10 302 235 1012 143 6 12 chr11 19390390 19390551 -131393002 - AluJb SINE Alu -152 160 1 2184 124 0 3 chr11 19390842 19391140 -131392413 - AluSx SINE Alu -15 297 1 2299 91 14 0 chr11 19391140 19391435 -131392118 - AluSq SINE Alu -13 300 1 2304 98 3 0 chr11 19391574 19391869 -131391684 - AluSp SINE Alu -9 304 9 188 302 129 35 chr11 19391869 19391977 -131391576 - MIR SINE MIR -109 153 32 1681 158 7 30 chr11 19392013 19392316 -131391237 + AluJo SINE Alu 1 296 -16 568 232 9 0 chr11 19392373 19392485 -131391068 + MER3 DNA MER1_type 1 113 -96 755 270 150 50 chr11 19392505 19392544 -131391009 - L1M4 LINE L1 -798 5348 5314 2174 122 0 0 chr11 19392544 19392847 -131390706 - AluSg SINE Alu -7 303 1 755 270 150 50 chr11 19392847 19392972 -131390581 - L1M4 LINE L1 -832 5314 5203 781 172 0 60 chr11 19392972 19393106 -131390447 - FLAM_C SINE Alu -6 127 2 755 270 150 50 chr11 19393106 19393543 -131390010 - L1M4 LINE L1 -943 5203 4640 2121 123 13 3 chr11 19393543 19393851 -131389702 - AluSx SINE Alu -1 311 1 755 270 150 50 chr11 19393851 19394065 -131389488 - L1M4 LINE L1 -1506 4640 4449 2197 110 0 7 chr11 19394132 19394433 -131389120 - AluSx SINE Alu -13 299 1 827 160 0 2 chr11 19394449 19394605 -131388948 - FRAM SINE Alu -24 152 20 1531 96 0 14 chr11 19394747 19394956 -131388597 + AluSg/x SINE Alu 83 288 -22 180 172 0 0 chr11 19394979 19395008 -131388545 - L2 LINE L2 -35 3237 3209 2140 98 10 3 chr11 19395437 19395744 -131387809 + AluSx SINE Alu 1 309 -3 214 302 123 28 chr11 19395953 19396059 -131387494 - L2 LINE L2 -2 3270 3155 910 235 128 77 chr11 19397515 19397942 -131385611 - L2 LINE L2 -3 3310 2906 690 235 33 6 chr11 19397942 19398125 -131385428 + MER5A DNA MER1_type 2 189 0 910 235 128 77 chr11 19398125 19398159 -131385394 - L2 LINE L2 -407 2906 2875 2429 222 59 19 chr11 19398159 19398749 -131384804 - MER90 LTR ERV1 0 614 1 910 235 128 77 chr11 19398749 19398904 -131384649 - L2 LINE L2 -438 2875 2624 407 305 8 0 chr11 19399196 19399324 -131384229 - MIR SINE MIR -16 246 118 235 215 62 15 chr11 19399477 19399542 -131384011 - MIR SINE MIR -97 165 98 1827 141 10 3 chr11 19399649 19399940 -131383613 + AluSx SINE Alu 1 293 -19 225 343 60 0 chr11 19400242 19400309 -131383244 + L2 LINE L2 3154 3224 -48 1544 181 32 0 chr11 19400485 19400767 -131382786 + AluJb SINE Alu 1 291 -21 276 208 104 0 chr11 19400929 19401006 -131382547 + L1ME LINE L1 5615 5699 -422 2172 117 0 0 chr11 19401268 19401566 -131381987 - AluSx SINE Alu -14 298 1 1845 132 3 3 chr11 19401729 19402046 -131381507 - AluSx SINE Alu 0 317 1 2214 114 3 0 chr11 19402102 19402408 -131381145 - AluSx SINE Alu -5 307 1 2137 99 0 16 chr11 19402564 19402867 -131380686 - AluSx SINE Alu -14 298 1 739 239 39 11 chr11 19404551 19404731 -131378822 + LTR41 LTR ERVL 1 185 -588 795 217 54 89 chr11 19404862 19405175 -131378378 + LTR41 LTR ERVL 460 761 -12 1790 157 7 3 chr11 19405249 19405542 -131378011 + AluJo SINE Alu 1 294 -18 1757 277 76 34 chr11 19405547 19406044 -131377509 + L1MEc LINE L1 37 512 -5884 2360 84 3 0 chr11 19406044 19406352 -131377201 + AluSp SINE Alu 2 310 -3 1757 277 76 34 chr11 19406352 19406633 -131376920 + L1MEc LINE L1 512 852 -5544 2354 71 0 0 chr11 19406633 19406928 -131376625 + AluSx SINE Alu 1 295 -17 1757 277 76 34 chr11 19406928 19406952 -131376601 + L1MEc LINE L1 852 874 -5522 222 304 129 29 chr11 19406976 19407147 -131376406 - L2 LINE L2 -1398 1916 1729 427 265 47 65 chr11 19407415 19407585 -131375968 + MIR SINE MIR 12 178 -84 2252 100 3 0 chr11 19408106 19408417 -131375136 - AluSp SINE Alu -1 312 1 2438 68 0 0 chr11 19408427 19408734 -131374819 - AluY SINE Alu -4 307 1 1266 175 160 11 chr11 19409361 19409624 -131373929 - AluJb SINE Alu 0 302 1 421 263 122 68 chr11 19409665 19409870 -131373683 + MIR SINE MIR 33 248 -14 222 271 0 57 chr11 19410348 19410418 -131373135 + MIR SINE MIR 79 144 -118 2498 49 0 0 chr11 19411832 19412138 -131371415 - AluY SINE Alu -4 307 2 1522 117 121 18 chr11 19412505 19412778 -131370775 + AluSx SINE Alu 2 302 -10 302 305 106 21 chr11 19412851 19412992 -131370561 - MIR SINE MIR -76 186 34 2233 104 10 0 chr11 19413091 19413399 -131370154 + AluSx SINE Alu 1 311 -1 1820 123 54 0 chr11 19413832 19414108 -131369445 - AluSx SINE Alu -21 291 1 2141 88 0 7 chr11 19414996 19415293 -131368260 - AluSx SINE Alu -17 295 1 2155 102 0 13 chr11 19418510 19418825 -131364728 + AluSx SINE Alu 1 311 -1 466 294 113 41 chr11 19419024 19419143 -131364410 - MIR SINE MIR -8 254 145 1263 174 108 59 chr11 19419143 19419431 -131364122 + AluJo SINE Alu 1 302 0 466 294 113 41 chr11 19419431 19419532 -131364021 - MIR SINE MIR -117 145 18 213 250 172 43 chr11 19420021 19420137 -131363416 - MIR SINE MIR -56 206 76 2208 76 23 3 chr11 19420888 19421191 -131362362 - AluSp SINE Alu -4 309 1 970 162 131 5 chr11 19421566 19421757 -131361796 - MER20 DNA MER1_type -4 215 1 281 220 0 0 chr11 19421993 19422043 -131361510 + L2 LINE L2 3258 3307 -6 1240 199 153 0 chr11 19422271 19422532 -131361021 + AluJb SINE Alu 2 302 0 270 0 0 0 chr11 19424861 19424891 -131358662 + (CA)n Simple_repeat Simple_repeat 2 31 0 2178 108 0 3 chr11 19425473 19425779 -131357774 + AluSg SINE Alu 1 305 -5 2048 113 0 0 chr11 19425788 19426072 -131357481 + AluSx SINE Alu 1 284 -28 207 0 0 0 chr11 19426084 19426107 -131357446 + (TAAG)n Simple_repeat Simple_repeat 1 23 0 205 268 0 0 chr11 19427178 19427219 -131356334 + polypurine Low_complexity Low_complexity 3 43 0 857 110 7 29 chr11 19427465 19427601 -131355952 + FLAM_C SINE Alu 1 133 0 2081 121 0 0 chr11 19427605 19427903 -131355650 + AluSc SINE Alu 1 298 -11 384 229 0 0 chr11 19428215 19428298 -131355255 + MER113 DNA MER1_type? 1 83 -438 2032 115 0 13 chr11 19428321 19428626 -131354927 + AluSx SINE Alu 1 301 -11 2359 67 0 3 chr11 19428733 19429031 -131354522 + AluY SINE Alu 1 297 -14 25 0 0 0 chr11 19429034 19429059 -131354494 + AT_rich Low_complexity Low_complexity 1 25 0 1827 79 36 4 chr11 19429150 19429402 -131354151 + AluSq SINE Alu 1 260 -53 255 195 0 0 chr11 19429404 19429507 -131354046 + AluSq SINE Alu 243 345 0 1847 173 0 0 chr11 19429933 19430245 -131353308 + AluJo SINE Alu 1 312 0 1751 156 14 3 chr11 19430376 19430665 -131352888 + AluJo SINE Alu 1 292 -20 339 162 0 0 chr11 19430668 19430736 -131352817 - L1MB8 LINE L1 -16 6162 6095 594 217 62 62 chr11 19430736 19430798 -131352755 - Tigger2 DNA MER2_type 0 2708 2647 2053 102 3 3 chr11 19430798 19431123 -131352430 + AluSq SINE Alu 1 325 0 594 217 62 62 chr11 19431123 19431220 -131352333 - Tigger2 DNA MER2_type -60 2648 2548 * 841 155 119 10 chr11 19431189 19431383 -131352170 - Tigger2 DNA MER2_type -2503 215 1 928 185 36 15 chr11 19431384 19431579 -131351974 - L1MB7 LINE L1 -87 6097 5899 1933 145 123 14 chr11 19431579 19431937 -131351616 + MLT2C1 LTR ERVL 1 397 0 1519 112 48 8 chr11 19431937 19432187 -131351366 - L1MB7 LINE L1 -281 5903 5644 2095 95 7 3 chr11 19432845 19433140 -131350413 + AluSp SINE Alu 1 296 -17 249 269 186 48 chr11 19433502 19433669 -131349884 - MIR3 SINE MIR -2 206 17 1018 152 0 101 chr11 19433680 19433917 -131349636 - AluJo SINE Alu -17 295 83 2098 102 3 16 chr11 19433939 19434243 -131349310 - AluSg SINE Alu -10 300 1 932 173 150 23 chr11 19434686 19434906 -131348647 + MIR SINE MIR 15 262 0 869 178 31 130 chr11 19435173 19435255 -131348298 + LTR24B LTR ERV1 194 283 -293 1866 126 3 58 chr11 19435255 19435580 -131347973 + AluSx SINE Alu 1 307 -5 1941 124 0 17 chr11 19435587 19435721 -131347832 + AluSx SINE Alu 3 138 -174 2217 83 3 3 chr11 19435721 19436022 -131347531 + AluY SINE Alu 1 301 -10 1941 124 0 17 chr11 19436022 19436186 -131347367 + AluSx SINE Alu 138 296 -16 869 178 31 130 chr11 19436186 19436388 -131347165 + LTR24B LTR ERV1 289 457 -119 597 95 0 0 chr11 19436391 19436475 -131347078 - L1M4 LINE L1 -451 5727 5644 427 176 88 11 chr11 19436763 19436854 -131346699 + LTR24 LTR ERV1 370 467 0 294 242 30 0 chr11 19437026 19437092 -131346461 + Charlie8 DNA MER1_type 2342 2409 -8 2047 99 3 10 chr11 19437343 19437637 -131345916 + AluSx SINE Alu 1 292 -20 2190 107 0 0 chr11 19438014 19438314 -131345239 + AluSc SINE Alu 2 301 -8 2197 92 3 0 chr11 19438319 19438613 -131344940 + AluSc SINE Alu 1 295 -14 821 129 0 102 chr11 19438932 19439118 -131344435 - AluSg/x SINE Alu 0 312 146 262 345 0 40 chr11 19439187 19439364 -131344189 + CT-rich Low_complexity Low_complexity 1 170 0 580 170 57 0 chr11 19442230 19442336 -131341217 + MER103 DNA DNA 55 166 0 1446 124 9 0 chr11 19442339 19442564 -131340989 - L1PA16 LINE L1 0 6166 5940 442 315 0 8 chr11 19442694 19442824 -131340729 + MIR SINE MIR 18 146 -62 482 179 120 34 chr11 19443759 19443876 -131339677 + MIR SINE MIR 88 214 -48 2231 87 7 0 chr11 19445231 19445531 -131338022 - AluSq SINE Alu -9 304 3 254 316 26 0 chr11 19445783 19445859 -131337694 - L2 LINE L2 -181 3091 3014 195 217 22 0 chr11 19445984 19446030 -131337523 - L2 LINE L2 -1 3312 3266 282 317 0 24 chr11 19446044 19446126 -131337427 - MIR SINE MIR 0 262 183 427 265 76 8 chr11 19446668 19446800 -131336753 - MIR SINE MIR -121 141 1 345 307 33 26 chr11 19446855 19447008 -131336545 + L3 LINE CR1 1410 1563 -14 310 307 197 0 chr11 19447668 19447805 -131335748 - L2 LINE L2 -2 3270 3107 223 299 13 39 chr11 19447852 19447929 -131335624 + L2 LINE L2 3225 3299 -14 782 129 0 24 chr11 19447940 19448064 -131335489 - FLAM_C SINE Alu -20 123 3 368 312 76 57 chr11 19448260 19448436 -131335117 + L2 LINE L2 2597 2781 -533 1427 96 200 20 chr11 19448436 19448686 -131334867 - AluSg1 SINE Alu -14 295 1 368 312 76 57 chr11 19448686 19448772 -131334781 + L2 LINE L2 2781 2864 -450 510 285 93 28 chr11 19449115 19449329 -131334224 - MIR SINE MIR -33 229 2 194 298 35 0 chr11 19449366 19449423 -131334130 - MIR3 SINE MIR -49 159 101 1306 159 14 67 chr11 19449586 19449869 -131333684 + AluJo SINE Alu 1 268 -44 382 294 34 45 chr11 19450031 19450208 -131333345 - MIR SINE MIR -21 241 67 340 341 81 6 chr11 19451053 19451226 -131332327 - MIR SINE MIR -75 187 2 226 286 227 0 chr11 19451287 19451406 -131332147 - MIR SINE MIR -77 185 40 268 141 50 40 chr11 19452892 19452991 -131330562 + (TATATG)n Simple_repeat Simple_repeat 2 101 0 325 256 67 0 chr11 19453006 19453096 -131330457 - L1MC4 LINE L1 -1333 6709 6614 * 359 178 82 14 chr11 19453026 19453099 -131330454 + L1MC4 LINE L1 6613 6690 -1352 279 389 25 6 chr11 19453099 19453261 -131330292 - L2 LINE L2 -189 3083 2919 228 313 17 61 chr11 19453425 19453472 -131330081 - L2 LINE L2 -527 2787 2739 1770 150 144 6 chr11 19453472 19453792 -131329761 - MLT1A1 LTR MaLR 0 365 2 228 313 17 61 chr11 19453792 19453859 -131329694 - L2 LINE L2 -575 2739 2678 2054 80 18 4 chr11 19457016 19457315 -131326238 + AluSg SINE Alu 1 303 0 250 233 67 0 chr11 19458391 19458451 -131325102 + MIR SINE MIR 82 145 -63 2213 99 0 3 chr11 19458472 19458774 -131324779 + AluSg SINE Alu 1 301 -9 1615 138 0 0 chr11 19458784 19459023 -131324530 + AluSx SINE Alu 1 239 -73 391 259 32 69 chr11 19459054 19459243 -131324310 + L1MC4a LINE L1 5789 5970 -1838 241 286 107 0 chr11 19459522 19459606 -131323947 - L3b LINE CR1 -150 1433 1341 329 217 181 108 chr11 19460894 19461060 -131322493 + MER5B DNA MER1_type 1 178 0 955 256 152 0 chr11 19461061 19461338 -131322215 - MER102b DNA MER1_type -21 320 2 373 307 0 24 chr11 19461381 19461508 -131322045 + MIR SINE MIR 124 247 -15 185 156 0 0 chr11 19463437 19463469 -131320084 - L2 LINE L2 -2 3270 3239 280 295 95 19 chr11 19463494 19463599 -131319954 + L2 LINE L2 3155 3267 -5 228 333 65 0 chr11 19463605 19463713 -131319840 - L2 LINE L2 -41 3231 3117 446 204 83 89 chr11 19464696 19464743 -131318810 + MIR SINE MIR 24 70 -192 2077 98 0 71 chr11 19464743 19465068 -131318485 + AluSx SINE Alu 1 302 -10 446 204 83 89 chr11 19465068 19465177 -131318376 + MIR SINE MIR 70 179 -83 373 323 15 8 chr11 19465729 19465859 -131317694 + MIR3 SINE MIR 46 176 -32 799 195 95 59 chr11 19466481 19466513 -131317040 + MIR SINE MIR 4 33 -229 1456 168 120 18 chr11 19466513 19466787 -131316766 + AluJb SINE Alu 1 302 0 799 195 95 59 chr11 19466787 19466975 -131316578 + MIR SINE MIR 33 232 -30 184 356 153 17 chr11 19467548 19467666 -131315887 - L2 LINE L2 -6 3266 3133 216 320 29 29 chr11 19468104 19468207 -131315346 - L2 LINE L2 -285 2987 2885 * 405 230 14 72 chr11 19468188 19468327 -131315226 - MIR3 SINE MIR -20 188 58 5151 226 5 11 chr11 19568476 19569813 -131213740 - L1 LINE L1 -1909 4237 2909 222 300 29 0 chr11 19570049 19570119 -131213434 + L2 LINE L2 3242 3313 0 264 366 22 0 chr11 19570740 19570874 -131212679 - MIR SINE MIR -63 199 63 246 341 12 0 chr11 19571466 19571551 -131212002 - MIR3 SINE MIR -38 170 85 3549 93 17 0 chr11 19571831 19572417 -131211136 + L1PB1 LINE L1 5197 5791 -360 344 132 29 0 chr11 19572422 19572490 -131211063 + (TATATG)n Simple_repeat Simple_repeat 5 74 0 2718 83 3 0 chr11 19572505 19572867 -131210686 + L1PB1 LINE L1 5787 6149 -2 660 297 56 43 chr11 19573942 19574222 -131209331 - LTR33 LTR ERVL -21 500 210 2449 138 31 14 chr11 19574222 19574643 -131208910 + MSTA LTR MaLR 1 428 0 660 297 56 43 chr11 19574643 19574826 -131208727 - LTR33 LTR ERVL -311 210 31 919 284 9 24 chr11 19575111 19575449 -131208104 - MER2 DNA MER2_type 0 345 13 291 312 80 16 chr11 19577098 19577223 -131206330 - MIR SINE MIR -109 153 21 240 316 26 0 chr11 19577528 19577604 -131205949 + L2 LINE L2 3236 3313 0 369 299 108 6 chr11 19578225 19578382 -131205171 - MIR SINE MIR -75 187 15 246 296 25 25 chr11 19578871 19578952 -131204601 + L2 LINE L2 3179 3259 -54 239 311 48 19 chr11 19578960 19579068 -131204485 - MIR3 SINE MIR -37 171 58 391 289 32 32 chr11 19579262 19579449 -131204104 + MLT1J LTR MaLR 94 280 -231 1630 194 6 23 chr11 19579554 19579904 -131203649 + MER2 DNA MER2_type 1 344 0 991 316 52 10 chr11 19580177 19580662 -131202891 + LTR33 LTR ERVL 7 511 -10 7389 36 6 0 chr11 19581606 19583114 -131200439 + L1PA4 LINE L1 4641 6153 -2 504 78 0 0 chr11 19584601 19584678 -131198875 - L1PB1 LINE L1 0 6151 6075 3916 88 29 2 chr11 19584760 19585342 -131198211 - L1PB1 LINE L1 -69 6082 5485 26 30 0 0 chr11 19586503 19586536 -131197017 + AT_rich Low_complexity Low_complexity 1 33 0 396 261 60 55 chr11 19586811 19587010 -131196543 - L2 LINE L2 -1481 1833 1634 197 319 50 67 chr11 19587533 19587558 -131195995 - L2 LINE L2 -9 3304 3280 1503 189 107 14 chr11 19587558 19587913 -131195640 + MLT1B LTR MaLR 1 388 -2 197 319 50 67 chr11 19587913 19588006 -131195547 - L2 LINE L2 -33 3280 3188 239 271 62 35 chr11 19588292 19588436 -131195117 - L2 LINE L2 -1348 1966 1819 640 299 81 41 chr11 19589162 19589527 -131194026 + L1MC4a LINE L1 5302 5651 -2157 228 35 0 0 chr11 19589527 19589556 -131193997 + (TA)n Simple_repeat Simple_repeat 1 29 0 640 299 81 41 chr11 19589556 19589705 -131193848 + L1MC4a LINE L1 5651 5844 -1964 1806 186 3 0 chr11 19589705 19590016 -131193537 + AluJo SINE Alu 1 312 0 640 299 81 41 chr11 19590016 19590081 -131193472 + L1MC4a LINE L1 5844 5905 -1903 473 32 16 0 chr11 19590097 19590160 -131193393 + (TA)n Simple_repeat Simple_repeat 1 64 0 53 40 0 0 chr11 19590325 19590399 -131193154 + AT_rich Low_complexity Low_complexity 1 74 0 1031 287 123 38 chr11 19590508 19591173 -131192380 - L2 LINE L2 -1469 1845 1124 2672 242 48 42 chr11 19591176 19592190 -131191363 + L1MD2 LINE L1 5325 6344 -15 307 274 48 0 chr11 19592192 19592276 -131191277 - L2 LINE L2 -2577 737 650 213 39 0 0 chr11 19594347 19594373 -131189180 + (TGAG)n Simple_repeat Simple_repeat 2 27 0 4773 75 11 5 chr11 19594670 19595362 -131188191 - L1PA8 LINE L1 -6 6166 5437 * 5329 106 13 1 chr11 19595355 19596236 -131187317 + L1P LINE L1 4541 5429 -702 183 220 140 0 chr11 19596709 19596759 -131186794 + L2 LINE L2 3216 3272 0 1306 247 23 3 chr11 19598082 19598434 -131185119 - L1MB4 LINE L1 -1 6179 5821 345 289 114 30 chr11 19600469 19600635 -131182918 - MIR SINE MIR -62 200 21 217 314 29 0 chr11 19600955 19601025 -131182528 + L2 LINE L2 3242 3313 0 237 395 12 12 chr11 19601796 19601882 -131181671 + L2 LINE L2 3134 3219 -53 228 367 70 0 chr11 19601889 19602047 -131181506 - MIR3 SINE MIR -37 171 3 410 293 102 59 chr11 19602124 19602380 -131181173 + MLT1J LTR MaLR 7 273 -238 1604 216 6 29 chr11 19602494 19602845 -131180708 + MER2 DNA MER2_type 1 343 -1 1026 312 78 19 chr11 19603136 19603598 -131179955 + LTR33 LTR ERVL 31 519 -2 31418 119 13 53 chr11 19604414 19610482 -131173071 - L1PA7 LINE L1 -327 5827 12 21966 106 17 29 chr11 19610495 19612609 -131170944 + L1PA8 LINE L1 1862 3999 -2173 5413 150 27 18 chr11 19612609 19613569 -131169984 + LTR5 LTR ERVK 1 969 0 21966 106 17 29 chr11 19613569 19614904 -131168649 + L1PA8 LINE L1 3999 5268 -904 2284 109 0 7 chr11 19614904 19615207 -131168346 - AluSx SINE Alu -11 301 1 21966 106 17 29 chr11 19615207 19616096 -131167457 + L1PA8 LINE L1 5268 6166 -6 1733 227 55 98 chr11 19616047 19616799 -131166754 + L1MD2 LINE L1 5631 6349 -10 * 244 230 23 35 chr11 19616802 19616889 -131166664 - L2 LINE L2 -2581 733 648 21 0 0 0 chr11 19617916 19617937 -131165616 + AT_rich Low_complexity Low_complexity 1 21 0 2403 70 0 0 chr11 19618880 19619164 -131164389 - AluY SINE Alu -26 285 2 203 275 156 46 chr11 19619356 19619465 -131164088 + L2 LINE L2 3139 3259 -13 242 328 0 15 chr11 19620703 19620770 -131162783 - L2 LINE L2 -86 3186 3121 1301 248 17 0 chr11 19621564 19621915 -131161638 - L1MB4 LINE L1 0 6180 5824 199 359 57 0 chr11 19623945 19624051 -131159502 - MIR SINE MIR -62 200 89 194 286 43 14 chr11 19624438 19624508 -131159045 + L2 LINE L2 3242 3313 0 238 301 49 8 chr11 19625103 19625226 -131158327 - MIR SINE MIR -37 225 98 238 357 70 19 chr11 19625863 19626020 -131157533 - MIR3 SINE MIR -37 171 7 368 309 127 45 chr11 19626080 19626394 -131157159 + MLT1J LTR MaLR 4 343 -168 1237 264 9 23 chr11 19626449 19626797 -131156756 + MER2 DNA MER2_type 2 344 0 970 289 65 40 chr11 19627086 19627271 -131156282 + LTR33 LTR ERVL 31 210 -311 2707 143 29 7 chr11 19627271 19627690 -131155863 - MSTA LTR MaLR 0 428 1 970 289 65 40 chr11 19627690 19627981 -131155572 + LTR33 LTR ERVL 210 519 -2 1002 169 0 6 chr11 19628665 19628831 -131154722 + Tigger1 DNA MER2_type 1913 2077 -341 212 57 0 29 chr11 19628839 19628874 -131154679 + (TTTTA)n Simple_repeat Simple_repeat 1 34 0 7711 24 6 4 chr11 19628874 19630039 -131153514 - L1PA3 LINE L1 -24 6131 4965 1365 212 72 0 chr11 19630039 19630346 -131153207 + Tigger1 DNA MER2_type 2089 2417 -1 1733 180 0 0 chr11 19630702 19630991 -131152562 + AluJb SINE Alu 24 312 0 195 129 0 0 chr11 19630995 19631026 -131152527 + (A)n Simple_repeat Simple_repeat 1 31 0 1391 183 95 0 chr11 19631077 19631340 -131152213 + AluSx SINE Alu 1 288 -24 25 0 0 0 chr11 19631340 19631365 -131152188 + AT_rich Low_complexity Low_complexity 1 25 0 1024 289 88 24 chr11 19631441 19632029 -131151524 + L1MC4a LINE L1 5286 5911 -1897 1051 301 103 38 chr11 19632277 19632944 -131150609 - L2 LINE L2 -1482 1832 1122 1018 274 72 3 chr11 19632944 19633291 -131150262 + L1MD2 LINE L1 5324 5694 -665 * 16233 160 12 110 chr11 19633288 19635931 -131147622 + L1PA8 LINE L1 2 2122 -4024 181 0 33 33 chr11 19635931 19635961 -131147592 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 16233 160 12 110 chr11 19635961 19637328 -131146225 + L1PA8 LINE L1 2122 3621 -2525 12641 112 7 3 chr11 19637428 19639992 -131143561 + L1PA8 LINE L1 3595 6165 -7 1761 223 52 100 chr11 19639994 19640702 -131142851 + L1MD2 LINE L1 5685 6358 -1 241 250 26 26 chr11 19640722 19640798 -131142755 - L2 LINE L2 -2605 709 634 199 313 139 17 chr11 19642921 19643036 -131140517 + L2 LINE L2 3140 3268 -4 1028 219 48 10 chr11 19645113 19645405 -131138148 - L1MB4 LINE L1 0 6180 5878 180 372 108 0 chr11 19648481 19648629 -131134924 - MIR SINE MIR -63 199 36 232 414 23 0 chr11 19649128 19649215 -131134338 + L2 LINE L2 3132 3220 -52 215 337 12 0 chr11 19649221 19649307 -131134246 - MIR3 SINE MIR -37 171 85 252 326 82 0 chr11 19649532 19649630 -131133923 + MLT1J2 LTR MaLR 67 172 -278 1203 251 6 26 chr11 19649870 19650181 -131133372 + MER2 DNA MER2_type 41 345 0 898 293 68 41 chr11 19650470 19650654 -131132899 + LTR33 LTR ERVL 31 208 -313 2651 142 39 7 chr11 19650654 19651069 -131132484 - MSTA LTR MaLR 0 428 1 898 293 68 41 chr11 19651069 19651352 -131132201 + LTR33 LTR ERVL 208 511 -10 2497 184 41 6 chr11 19652053 19652541 -131131012 + Tigger1 DNA MER2_type 1913 2417 -1 1596 202 10 0 chr11 19652822 19653114 -131130439 + AluJb SINE Alu 1 295 -17 1905 158 3 0 chr11 19653168 19653459 -131130094 + AluSx SINE Alu 1 292 -20 26 0 0 0 chr11 19653463 19653489 -131130064 + AT_rich Low_complexity Low_complexity 1 26 0 1089 289 84 15 chr11 19653619 19654152 -131129401 + L1MC4a LINE L1 5342 5911 -1897 27 29 0 0 chr11 19654152 19654186 -131129367 + AT_rich Low_complexity Low_complexity 1 34 0 1094 305 113 21 chr11 19654403 19655056 -131128497 - L2 LINE L2 -1480 1834 1122 1018 274 72 3 chr11 19655056 19655403 -131128150 + L1MD2 LINE L1 5324 5694 -665 * 27106 184 45 20 chr11 19655400 19660749 -131122804 + L1P3 LINE L1 2 5487 -667 1170 72 0 0 chr11 19660749 19660887 -131122666 + AluY SINE Alu 1 138 -173 5273 97 0 0 chr11 19660901 19661591 -131121962 + L1PA8 LINE L1 5476 6165 -7 1525 230 46 104 chr11 19661591 19662297 -131121256 + L1MD2 LINE L1 5685 6349 -10 371 270 10 10 chr11 19662301 19662401 -131121152 - L2 LINE L2 -2581 733 634 233 342 120 17 chr11 19664587 19664704 -131118849 + L2 LINE L2 3139 3267 -5 216 328 131 8 chr11 19665875 19665997 -131117556 - L2 LINE L2 -15 3257 3121 1330 224 29 6 chr11 19666811 19667159 -131116394 - L1MB4 LINE L1 0 6180 5825 181 343 67 0 chr11 19669165 19669270 -131114283 - MIR SINE MIR -62 200 89 216 300 29 0 chr11 19669658 19669728 -131113825 + L2 LINE L2 3242 3313 0 260 374 11 11 chr11 19670992 19671083 -131112470 + L2 LINE L2 3129 3219 -53 217 333 42 60 chr11 19671090 19671258 -131112295 - MIR3 SINE MIR -37 171 7 298 348 34 28 chr11 19671386 19671564 -131111989 + MLT1J LTR MaLR 94 272 -239 856 279 7 35 chr11 19671816 19672106 -131111447 + MER2 DNA MER2_type 63 344 -1 867 309 58 32 chr11 19672402 19672581 -131110972 + LTR33 LTR ERVL 37 210 -311 2439 169 26 9 chr11 19672581 19673001 -131110552 - MSTA LTR MaLR -1 427 1 867 309 58 32 chr11 19673001 19673284 -131110269 + LTR33 LTR ERVL 210 511 -10 2635 185 39 2 chr11 19673988 19674475 -131109078 + Tigger1 DNA MER2_type 1913 2417 -1 21 0 0 0 chr11 19674728 19674749 -131108804 + AT_rich Low_complexity Low_complexity 1 21 0 1397 196 0 0 chr11 19674768 19675008 -131108545 + AluJb SINE Alu 11 250 -62 1948 140 3 7 chr11 19675157 19675450 -131108103 + AluSx SINE Alu 1 292 -20 30 0 0 0 chr11 19675450 19675480 -131108073 + AT_rich Low_complexity Low_complexity 1 30 0 1108 288 78 29 chr11 19675535 19676147 -131107406 + L1MC4a LINE L1 5270 5911 -1897 27 62 0 0 chr11 19676149 19676197 -131107356 + AT_rich Low_complexity Low_complexity 1 48 0 1137 303 119 17 chr11 19676408 19677046 -131106507 - L2 LINE L2 -1490 1824 1122 2623 233 70 73 chr11 19677046 19678075 -131105478 + L1MD2 LINE L1 5324 6349 -10 255 313 20 10 chr11 19678078 19678177 -131105376 - L2 LINE L2 -2581 733 634 207 0 0 0 chr11 19678742 19678765 -131104788 + (TTA)n Simple_repeat Simple_repeat 2 24 0 21 0 0 0 chr11 19678765 19678786 -131104767 + AT_rich Low_complexity Low_complexity 1 21 0 232 275 156 46 chr11 19680378 19680487 -131103066 + L2 LINE L2 3139 3259 -13 1112 238 41 6 chr11 19682602 19682946 -131100607 - L1MB4 LINE L1 0 6180 5825 13687 88 1 0 chr11 19684639 19686472 -131097081 - L1P LINE L1 -925 5221 3388 2709 20 43 0 chr11 19686885 19687190 -131096363 - AluYb8 SINE Alu 0 318 1 258 289 174 0 chr11 19687225 19687346 -131096207 - MIR3 SINE MIR -23 185 44 199 319 28 14 chr11 19687625 19687697 -131095856 - L2 LINE L2 -219 3053 2981 1352 69 126 0 chr11 19687898 19688045 -131095508 + MER107 DNA MER1_type 1 175 -22 262 67 44 0 chr11 19688045 19688090 -131095463 + (CAA)n Simple_repeat Simple_repeat 2 48 0 1352 69 126 0 chr11 19688090 19688117 -131095436 + MER107 DNA MER1_type 175 197 0 288 295 11 21 chr11 19688283 19688378 -131095175 - MIR SINE MIR -50 212 119 1744 218 71 52 chr11 19688679 19689175 -131094378 + MLT1D LTR MaLR 1 505 0 2494 160 67 0 chr11 19689251 19689652 -131093901 - MSTA LTR MaLR 0 428 1 253 182 11 171 chr11 19690520 19690608 -131092945 - MIR3 SINE MIR -24 184 111 432 37 0 0 chr11 19690711 19690765 -131092788 + (CA)n Simple_repeat Simple_repeat 2 55 0 8136 104 4 20 chr11 19690965 19692219 -131091334 - L1MEc LINE L1 -2856 3359 2169 342 309 77 50 chr11 19692187 19692605 -131090948 - L1MEd LINE L1 -5244 875 447 * 211 62 0 62 chr11 19692607 19692655 -131090898 + (TTTTTG)n Simple_repeat Simple_repeat 3 47 0 214 299 52 26 chr11 19693062 19693139 -131090414 + MIR SINE MIR 66 144 -118 6054 150 12 32 chr11 19693349 19694710 -131088843 - L1MA5 LINE L1 -38 7283 5933 * 6596 179 26 15 chr11 19694707 19696072 -131087481 - L1MA5 LINE L1 -4710 2458 1056 253 310 52 0 chr11 19696093 19696209 -131087344 + MIR SINE MIR 75 196 -66 365 342 77 15 chr11 19696229 19696425 -131087128 + MIR SINE MIR 42 249 -13 796 186 41 0 chr11 19696946 19697091 -131086462 - FRAM SINE Alu -1 175 25 189 239 68 68 chr11 19697243 19697331 -131086222 + MIR SINE MIR 56 143 -119 195 204 0 0 chr11 19698567 19698611 -131084942 + L2 LINE L2 3182 3225 -88 221 279 0 44 chr11 19698632 19698700 -131084853 - L2 LINE L2 0 3313 3249 241 318 32 48 chr11 19698998 19699124 -131084429 + MIR SINE MIR 25 148 -114 2562 200 31 82 chr11 19699125 19699773 -131083780 + LTR9 LTR ERV1 1 793 -1 839 181 42 0 chr11 19700025 19700191 -131083362 - MIR SINE MIR -21 241 69 2426 97 0 0 chr11 19700211 19700511 -131083042 + AluSx SINE Alu 1 300 -12 706 301 96 22 chr11 19701291 19701657 -131081896 - L2 LINE L2 0 3313 2921 453 259 181 30 chr11 19701718 19701988 -131081565 - L2 LINE L2 -541 2773 2463 351 280 111 65 chr11 19702082 19702450 -131081103 + L2 LINE L2 2853 3237 -76 752 274 76 16 chr11 19703810 19704113 -131079440 - L1MEd LINE L1 -5249 870 550 227 296 9 56 chr11 19704330 19704438 -131079115 - L1MEd LINE L1 -5732 387 285 419 323 95 13 chr11 19704603 19704761 -131078792 - MIR SINE MIR -78 184 14 214 323 165 0 chr11 19704847 19704980 -131078573 + L3 LINE CR1 1301 1455 -122 222 319 9 71 chr11 19705682 19705795 -131077758 - MIR SINE MIR -65 143 38 252 280 191 18 chr11 19706060 19706228 -131077325 + MIR SINE MIR 60 256 -6 462 213 195 17 chr11 19706296 19706470 -131077083 - MIR SINE MIR -9 253 49 424 321 25 0 chr11 19706570 19706729 -131076824 + MIR3 SINE MIR 35 197 -11 280 291 71 31 chr11 19707352 19707479 -131076074 + L2 LINE L2 3140 3271 -1 1124 278 86 27 chr11 19708367 19708849 -131074704 + MLT1K LTR MaLR 16 586 -2 535 191 24 6 chr11 19708928 19709096 -131074457 + (TCCA)n Simple_repeat Simple_repeat 1 171 0 316 318 75 17 chr11 19709603 19709776 -131073777 - MIR3 SINE MIR -20 188 6 2541 52 0 10 chr11 19709885 19710190 -131073363 - AluY SINE Alu -1 310 9 2888 151 17 4 chr11 19710560 19711031 -131072522 - L1PA16 LINE L1 -1 6165 5689 1702 164 11 4 chr11 19711265 19711546 -131072007 - AluSx SINE Alu -29 283 1 283 271 59 0 chr11 19711783 19711868 -131071685 - L2 LINE L2 -44 3269 3180 277 316 30 0 chr11 19711922 19712055 -131071498 - MIR3 SINE MIR 0 208 72 187 303 184 0 chr11 19712335 19712411 -131071142 - MIR SINE MIR -78 130 41 552 260 63 8 chr11 19712587 19712714 -131070839 + MER45A DNA AcHobo 1 134 -44 4076 133 29 2 chr11 19712929 19713547 -131070006 - MER41B LTR ERV1 0 635 1 2880 10 0 0 chr11 19714355 19714661 -131068892 + AluY SINE Alu 1 306 -5 181 299 191 26 chr11 19714663 19714857 -131068696 + L3 LINE CR1 1011 1236 -341 484 301 65 68 chr11 19715236 19715937 -131067616 + L2 LINE L2 2560 3270 -2 3019 184 95 74 chr11 19716387 19717031 -131066522 + L1MD2 LINE L1 4965 5594 -648 479 41 82 0 chr11 19717031 19717104 -131066449 - MADE1 DNA Mariner -1 79 1 3019 184 95 74 chr11 19717104 19717756 -131065797 + L1MD2 LINE L1 5594 6234 -8 234 243 135 0 chr11 19717827 19717901 -131065652 - L2 LINE L2 -1 3312 3229 279 258 21 75 chr11 19717934 19718027 -131065526 - MIR SINE MIR -147 115 28 723 211 0 0 chr11 19718259 19718392 -131065161 + FLAM_A SINE Alu 1 133 0 23 33 0 0 chr11 19718440 19718470 -131065083 + AT_rich Low_complexity Low_complexity 1 30 0 350 228 18 108 chr11 19720037 19720119 -131063434 - L1ME LINE L1 -439 5682 5621 2208 121 0 0 chr11 19720119 19720416 -131063137 + AluSx SINE Alu 2 298 -14 350 228 18 108 chr11 19720416 19720500 -131063053 - L1ME LINE L1 -500 5621 5531 346 275 22 29 chr11 19720738 19720876 -131062677 + MIR3 SINE MIR 4 140 -68 487 289 0 8 chr11 19721799 19721927 -131061626 + MLT1L LTR MaLR 114 240 -375 267 164 119 0 chr11 19721980 19722047 -131061506 + MLT1L LTR MaLR 405 479 -136 588 216 127 6 chr11 19722716 19722897 -131060656 + MIR SINE MIR 18 220 -42 560 299 74 22 chr11 19723113 19723344 -131060209 - MIR SINE MIR 0 262 20 1585 174 43 0 chr11 19723345 19723650 -131059903 - AluYb8 SINE Alu 0 318 1 277 281 35 61 chr11 19725154 19725202 -131058351 - MER81 DNA DNA 0 114 66 1722 149 51 60 chr11 19725202 19725517 -131058036 + AluSx SINE Alu 1 312 0 277 281 35 61 chr11 19725517 19725582 -131057971 - MER81 DNA DNA -48 66 4 903 270 52 11 chr11 19726086 19726247 -131057306 + LTR16A1 LTR ERVL 180 358 -99 1740 192 157 17 chr11 19726247 19726654 -131056899 - MLT2C2 LTR ERVL 0 464 1 903 270 52 11 chr11 19726654 19726759 -131056794 + LTR16A1 LTR ERVL 358 457 0 266 283 26 44 chr11 19726801 19726914 -131056639 + L2 LINE L2 3166 3276 -37 660 265 62 9 chr11 19727321 19727532 -131056021 + LTR33A LTR ERVL 293 514 -9 193 125 0 25 chr11 19727537 19727577 -131055976 + L2 LINE L2 3267 3305 -8 288 256 16 83 chr11 19727675 19727796 -131055757 - MLT1K LTR MaLR -340 248 136 206 256 323 15 chr11 19728334 19728467 -131055086 - MIR SINE MIR -54 208 35 388 321 103 22 chr11 19728497 19728685 -131054868 + L3 LINE CR1 1168 1339 -238 2582 40 7 7 chr11 19728685 19728988 -131054565 + AluY SINE Alu 1 303 -8 388 321 103 22 chr11 19728988 19729166 -131054387 + L3 LINE CR1 1339 1564 -13 1972 131 25 0 chr11 19729280 19729562 -131053991 + AluJo SINE Alu 8 296 -16 358 287 29 15 chr11 19730308 19730444 -131053109 - MIR SINE MIR -55 153 16 281 250 40 0 chr11 19730989 19731065 -131052488 - L2 LINE L2 -6 3307 3229 367 216 108 61 chr11 19731902 19732050 -131051503 - MIR SINE MIR -1 261 107 239 200 36 18 chr11 19732464 19732519 -131051034 - L2 LINE L2 -16 3256 3201 338 313 18 102 chr11 19732544 19732819 -131050734 - L2 LINE L2 -1 3271 3020 210 143 0 0 chr11 19733116 19733151 -131050402 + (CA)n Simple_repeat Simple_repeat 1 35 0 265 302 71 0 chr11 19733429 19733555 -131049998 + MIR3 SINE MIR 12 146 -62 225 333 128 0 chr11 19733714 19733831 -131049722 + L2 LINE L2 3125 3256 -16 376 260 14 68 chr11 19734469 19734615 -131048938 + L2 LINE L2 3134 3271 -1 298 291 18 91 chr11 19734695 19734808 -131048745 - MIR3 SINE MIR -21 187 88 2545 138 13 0 chr11 19734808 19735193 -131048360 + MLT1B LTR MaLR 1 390 0 298 291 18 91 chr11 19735193 19735244 -131048309 - MIR3 SINE MIR -120 88 35 776 255 5 25 chr11 19735335 19735539 -131048014 - MIR SINE MIR -3 259 60 3399 25 8 0 chr11 19735609 19736004 -131047549 - L1PA5 LINE L1 0 6154 5757 28 48 0 0 chr11 19736248 19736290 -131047263 + AT_rich Low_complexity Low_complexity 1 42 0 215 160 20 20 chr11 19736658 19736708 -131046845 - MIR SINE MIR -76 132 83 694 286 30 0 chr11 19736728 19736927 -131046626 - MIR SINE MIR -3 259 55 340 327 9 0 chr11 19738019 19738126 -131045427 + L2 LINE L2 3203 3310 -3 421 282 15 8 chr11 19738852 19738983 -131044570 - MIR SINE MIR -74 188 57 409 215 75 28 chr11 19738987 19739094 -131044459 - L2 LINE L2 -2 3311 3200 1088 248 49 54 chr11 19739143 19739183 -131044370 + L2 LINE L2 2804 2843 -470 2186 86 17 3 chr11 19739183 19739473 -131044080 - AluSc SINE Alu -15 294 1 1088 248 49 54 chr11 19739473 19739907 -131043646 + L2 LINE L2 2843 3312 -1 204 205 0 0 chr11 19739981 19740020 -131043533 + CT-rich Low_complexity Low_complexity 2 40 0 1306 235 195 10 chr11 19740203 19740701 -131042852 - MLT1G LTR MaLR 0 590 1 190 211 0 39 chr11 19740941 19740993 -131042560 - MIR3 SINE MIR -5 203 154 202 290 136 32 chr11 19741156 19741311 -131042242 - MIR3 SINE MIR -28 180 10 491 269 39 8 chr11 19741434 19741564 -131041989 + L2 LINE L2 3180 3313 0 182 396 36 7 chr11 19741837 19741976 -131041577 - MIR3 SINE MIR -6 202 60 890 260 239 24 chr11 19742272 19742477 -131041076 - Charlie7 DNA MER1_type -1928 684 524 189 0 0 0 chr11 19742477 19742498 -131041055 + (TTA)n Simple_repeat Simple_repeat 1 21 0 890 260 239 24 chr11 19742498 19742753 -131040800 - Charlie7 DNA MER1_type -2088 524 125 22 80 0 0 chr11 19742819 19742869 -131040684 + AT_rich Low_complexity Low_complexity 1 50 0 1375 191 3 67 chr11 19743417 19743732 -131039821 + AluJo SINE Alu 5 299 -13 316 260 152 83 chr11 19743780 19743846 -131039707 + L1ME4a LINE L1 5314 5374 -747 180 0 0 0 chr11 19743846 19743866 -131039687 + (CAA)n Simple_repeat Simple_repeat 2 21 0 316 260 152 83 chr11 19743866 19744471 -131039082 + L1ME4a LINE L1 5374 6021 -100 24 91 0 0 chr11 19744534 19744600 -131038953 + AT_rich Low_complexity Low_complexity 1 66 0 3230 198 88 19 chr11 19745137 19746101 -131037452 + L1ME1 LINE L1 5089 6140 -26 7135 169 10 3 chr11 19746187 19746393 -131037160 - L1PA14 LINE L1 -1 6160 5957 2083 132 3 43 chr11 19746393 19746718 -131036835 - AluSx SINE Alu 0 312 1 7135 169 10 3 chr11 19746718 19748592 -131034961 - L1PA14 LINE L1 -204 5957 4078 28 29 0 0 chr11 19748602 19748637 -131034916 + AT_rich Low_complexity Low_complexity 1 35 0 424 212 113 52 chr11 19748669 19748881 -131034672 - MARNA DNA Mariner -141 445 221 226 298 53 0 chr11 19748912 19748969 -131034584 + Tigger3(Golem) DNA MER2_type 1 60 -2969 761 247 0 0 chr11 19748970 19749120 -131034433 + Tigger3(Golem) DNA MER2_type 2888 3037 0 2117 243 67 58 chr11 19749217 19749593 -131033960 - L1M4 LINE L1 -1886 4260 3889 23 68 0 0 chr11 19749593 19749637 -131033916 + AT_rich Low_complexity Low_complexity 1 44 0 2117 243 67 58 chr11 19749637 19749879 -131033674 - L1M4 LINE L1 -2257 3889 3651 2358 73 14 0 chr11 19749879 19750166 -131033387 + AluY SINE Alu 1 291 -20 2117 243 67 58 chr11 19750166 19750790 -131032763 - L1M4 LINE L1 -2495 3651 2975 1301 104 0 0 chr11 19750910 19751083 -131032470 - AluSg/x SINE Alu -8 304 132 207 0 0 0 chr11 19751083 19751106 -131032447 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1860 81 0 4 chr11 19751106 19751353 -131032200 - AluY SINE Alu -31 280 35 1421 291 94 52 chr11 19751357 19751705 -131031848 - L1MEc LINE L1 -4932 1464 1132 2092 108 11 0 chr11 19751705 19751982 -131031571 - AluSx SINE Alu -11 301 22 1421 291 94 52 chr11 19751982 19753006 -131030547 - L1MEc LINE L1 -5264 1132 35 1259 264 40 73 chr11 19753043 19753773 -131029780 + L1ME3 LINE L1 5257 5962 -208 312 301 55 41 chr11 19753804 19753950 -131029603 + L1ME3 LINE L1 5934 6081 -81 207 0 0 0 chr11 19753990 19754013 -131029540 + (TA)n Simple_repeat Simple_repeat 1 23 0 333 258 203 8 chr11 19754102 19754230 -131029323 + MARNA DNA Mariner 396 548 -38 1739 153 0 70 chr11 19754283 19754420 -131029133 + AluJo SINE Alu 1 146 -166 4003 64 6 2 chr11 19754420 19754935 -131028618 + L1PA7 LINE L1 5634 6150 -4 1739 153 0 70 chr11 19754935 19755111 -131028442 + AluJo SINE Alu 146 292 -20 40869 32 23 2 chr11 19755130 19761149 -131022404 + L1PA3 LINE L1 3 6155 0 416 164 0 0 chr11 19761996 19762069 -131021484 - MLT1E LTR MaLR 0 624 552 240 154 0 0 chr11 19762061 19762100 -131021453 - tRNA-Ile-ATT tRNA tRNA -38 39 1 * 1442 264 114 24 chr11 19762106 19762599 -131020954 - MLT1E LTR MaLR -56 537 1 832 125 0 0 chr11 19762802 19762914 -131020639 - AluSg/x SINE Alu -10 300 189 272 269 126 59 chr11 19763387 19763506 -131020047 + L2 LINE L2 3146 3272 0 306 0 0 0 chr11 19764502 19764536 -131019017 + (TG)n Simple_repeat Simple_repeat 2 35 0 2182 97 24 0 chr11 19764903 19765191 -131018362 + AluSx SINE Alu 1 295 -17 699 335 61 31 chr11 19765321 19765780 -131017773 + L2 LINE L2 2543 3013 -300 238 140 20 20 chr11 19767090 19767140 -131016413 + MARNA DNA Mariner 195 244 -342 228 147 0 0 chr11 19767767 19767801 -131015752 + Charlie5 DNA MER1_type 164 197 -2415 2141 104 40 0 chr11 19768754 19769052 -131014501 + AluY SINE Alu 1 310 -1 267 210 16 0 chr11 19769116 19769178 -131014375 - L3b LINE CR1 -174 1409 1347 407 375 34 11 chr11 19770353 19770529 -131013024 + L3 LINE CR1 1398 1577 0 1080 263 344 7 chr11 19773615 19774182 -131009371 + L2 LINE L2 2060 2817 -497 506 239 103 19 chr11 19774184 19774339 -131009214 + L2 LINE L2 3142 3309 -4 474 306 180 13 chr11 19774754 19775143 -131008410 + L2 LINE L2 1951 2404 -910 2118 104 0 0 chr11 19775403 19775673 -131007880 + AluSq SINE Alu 35 304 -9 281 226 400 32 chr11 19776506 19776661 -131006892 + MIR SINE MIR 36 247 -15 511 293 246 20 chr11 19776665 19777231 -131006322 + L2 LINE L2 2364 3055 -258 183 273 18 0 chr11 19778795 19778850 -131004703 + MIR SINE MIR 110 165 -97 202 256 0 0 chr11 19778899 19778942 -131004611 + (TTA)n Simple_repeat Simple_repeat 2 44 0 243 275 22 11 chr11 19779651 19779742 -131003811 + MER112 DNA MER1_type 156 247 -13 381 327 114 15 chr11 19781300 19781502 -131002051 + MIR SINE MIR 30 251 -11 23 54 0 0 chr11 19781505 19781542 -131002011 + AT_rich Low_complexity Low_complexity 1 37 0 784 275 183 39 chr11 19781765 19782202 -131001351 + L3 LINE CR1 782 1281 -296 288 250 0 53 chr11 19782292 19782368 -131001185 + L3 LINE CR1 1298 1369 -208 330 329 140 12 chr11 19784716 19784880 -130998673 - MIR3 SINE MIR -21 187 3 227 295 18 43 chr11 19785408 19785557 -130997996 - MIR SINE MIR -87 175 16 308 302 122 34 chr11 19786924 19787129 -130996424 + L3b LINE CR1 1153 1375 -208 21 0 0 0 chr11 19787220 19787241 -130996312 + AT_rich Low_complexity Low_complexity 1 21 0 32 0 0 0 chr11 19787836 19787868 -130995685 + AT_rich Low_complexity Low_complexity 1 32 0 1626 173 0 4 chr11 19787896 19788151 -130995402 - AluJb SINE Alu -24 288 35 413 313 0 0 chr11 19788946 19789058 -130994495 + L3 LINE CR1 1338 1449 -128 198 0 0 0 chr11 19790446 19790468 -130993085 + (T)n Simple_repeat Simple_repeat 1 22 0 312 344 32 16 chr11 19790693 19790818 -130992735 + MIR SINE MIR 20 146 -62 519 263 145 7 chr11 19790865 19791017 -130992536 - MIR3 SINE MIR -6 202 30 192 77 0 0 chr11 19791494 19791520 -130992033 + (TAA)n Simple_repeat Simple_repeat 2 27 0 209 234 0 21 chr11 19791521 19791568 -130991985 + GA-rich Low_complexity Low_complexity 3 48 0 312 255 38 28 chr11 19792008 19792114 -130991439 + MIR SINE MIR 15 121 -141 2184 85 0 0 chr11 19792131 19792441 -130991112 - AluSg SINE Alu 0 310 1 183 310 80 10 chr11 19792446 19792546 -130991007 - MIR SINE MIR -49 213 107 196 331 71 43 chr11 19793815 19793999 -130989554 - L2 LINE L2 -187 3085 2897 586 182 0 0 chr11 19794099 19794198 -130989355 - Tigger7 DNA MER2_type 0 2487 2389 1155 187 44 4 chr11 19794209 19794434 -130989119 - Tigger7 DNA MER2_type -470 235 2 2695 45 0 6 chr11 19795177 19795488 -130988065 + AluY SINE Alu 1 309 -2 304 326 0 0 chr11 19796783 19796872 -130986681 + L2 LINE L2 2718 2806 -508 245 258 30 0 chr11 19796982 19797048 -130986505 - MIR SINE MIR -125 137 70 206 250 12 88 chr11 19797054 19797134 -130986419 + L2 LINE L2 3236 3309 -4 199 324 213 0 chr11 19797340 19797448 -130986105 + MER5A DNA MER1_type 58 188 -1 764 269 28 43 chr11 19797531 19797784 -130985769 + MIR SINE MIR 12 260 -2 681 285 208 6 chr11 19797841 19798392 -130985161 + LTR50 LTR ERVL 30 795 0 332 288 291 26 chr11 19798405 19798783 -130984770 - L2 LINE L2 -688 2626 2149 2095 106 11 0 chr11 19798975 19799282 -130984271 + AluSp SINE Alu 1 310 0 1845 110 0 4 chr11 19799436 19799682 -130983871 + AluSx SINE Alu 55 299 -13 557 216 163 14 chr11 19800101 19800435 -130983118 - MLT1J2 LTR MaLR 0 450 37 460 300 108 96 chr11 19800567 19800964 -130982589 - L2 LINE L2 -1 3271 2870 2359 134 13 10 chr11 19801043 19801432 -130982121 + MLT1B LTR MaLR 1 390 0 2216 119 0 3 chr11 19802949 19803251 -130980302 + AluSx SINE Alu 2 302 -10 2236 215 16 2 chr11 19803713 19804221 -130979332 - L1 LINE L1 -3237 2909 2395 1670 121 15 134 chr11 19804230 19804619 -130978934 + LTR3b LTR ERVK 158 500 0 361 225 139 96 chr11 19804941 19805150 -130978403 + HERVK3 LTR ERVK 55 272 -6971 265 236 0 79 chr11 19805214 19805303 -130978250 + HERVK3 LTR ERVK 586 667 -6576 3909 221 68 8 chr11 19805307 19806239 -130977314 + HERVK3 LTR ERVK 1321 2308 -4935 2443 129 9 46 chr11 19806240 19806760 -130976793 + HERVK3 LTR ERVK 2996 5572 -373 1276 153 9 5 chr11 19806760 19806976 -130976577 + PRIMA41-int LTR ERV1 7540 7756 0 * 1355 87 11 0 chr11 19806793 19806978 -130976575 + HERVK3 LTR ERVK 5575 5761 -184 338 168 0 19 chr11 19806980 19807051 -130976502 + MER41C LTR ERV1 5 61 -493 436 0 0 0 chr11 19807051 19807101 -130976452 + HERVK14 LTR ERVK 5835 5884 -61 1630 153 52 9 chr11 19807123 19807449 -130976104 + LTR3b LTR ERVK 158 497 -3 564 90 0 0 chr11 19807449 19807527 -130976026 + LTR3b LTR ERVK 423 500 0 319 131 54 161 chr11 19807539 19807669 -130975884 - L1 LINE L1 -3756 2390 2275 * 13004 114 62 22 chr11 19807668 19809998 -130973555 - L1PBa LINE L1 -3999 2864 443 1686 135 74 37 chr11 19810011 19810336 -130973217 - LTR10A LTR ERV1 -61 548 212 24 0 0 0 chr11 19811003 19811027 -130972526 + AT_rich Low_complexity Low_complexity 1 24 0 1580 109 8 0 chr11 19811030 19811278 -130972275 - L1MA1 LINE L1 -4 7717 7468 31096 70 15 8 chr11 19811280 19816551 -130967002 - L1PA6 LINE L1 -4 6150 847 618 102 0 0 chr11 19816549 19816637 -130966916 - L1PA6 LINE L1 -6048 98 11 * 4946 113 30 19 chr11 19816647 19817671 -130965882 - L1MA1 LINE L1 -229 7492 6458 * 17121 177 65 12 chr11 19817638 19823296 -130960257 - L1MA1 LINE L1 -1588 5977 13 9963 157 50 4 chr11 19823298 19825173 -130958380 + Tigger1 DNA MER2_type 4 1963 -455 1627 96 50 27 chr11 19825186 19825401 -130958152 - L1PA14 LINE L1 -4 6157 5933 8492 64 5 1 chr11 19825401 19826468 -130957085 - MER11C LTR ERVK 0 1071 1 1627 96 50 27 chr11 19826468 19826513 -130957040 - L1PA14 LINE L1 -228 5933 5891 1811 133 77 9 chr11 19826513 19826831 -130956722 + THE1C LTR MaLR 1 340 -35 1426 138 40 28 chr11 19826831 19827084 -130956469 - THE1B LTR MaLR 0 364 109 1215 149 37 97 chr11 19827074 19827395 -130956158 + THE1C LTR MaLR 74 375 0 * 9809 118 24 37 chr11 19827398 19828996 -130954557 + THE1C-int LTR MaLR 4 1580 0 1626 148 50 78 chr11 19828998 19829382 -130954171 + THE1C LTR MaLR 3 375 0 646 214 0 0 chr11 19829397 19829523 -130954030 + Tigger1 DNA MER2_type 1950 2075 -343 1838 159 11 0 chr11 19829523 19829868 -130953685 - AluJb SINE Alu 0 348 1 1357 154 16 4 chr11 19829869 19830115 -130953438 + Tigger1 DNA MER2_type 2064 2312 -106 13618 195 32 14 chr11 19830133 19834935 -130948618 - L1PB1 LINE L1 -8 6859 1760 2301 112 0 0 chr11 19834935 19835230 -130948323 - AluSc SINE Alu -14 295 1 13618 195 32 14 chr11 19835230 19836246 -130947307 - L1PB1 LINE L1 -5107 1760 765 1166 258 53 43 chr11 19836244 19836775 -130946778 - L1PB1 LINE L1 -6312 551 16 * 875 252 22 6 chr11 19836776 19837098 -130946455 - L1M4 LINE L1 -842 5304 4978 * 3182 228 60 45 chr11 19837093 19837504 -130946049 - L1M4 LINE L1 -2684 3462 3059 840 93 16 0 chr11 19837504 19837633 -130945920 - L1PA13 LINE L1 -5 6158 6028 3182 228 60 45 chr11 19837633 19838452 -130945101 - L1M4 LINE L1 -3087 3059 2213 499 306 35 26 chr11 19838555 19838784 -130944769 - MIR SINE MIR -28 234 4 198 369 0 0 chr11 19839272 19839337 -130944216 - MIR SINE MIR -101 107 43 509 271 19 52 chr11 19840142 19840297 -130943256 + MIR3 SINE MIR 48 197 -11 284 287 58 0 chr11 19840974 19841061 -130942492 + L3 LINE CR1 1402 1493 -84 264 309 165 0 chr11 19841098 19841195 -130942358 - L2 LINE L2 -21 3251 3139 22 35 0 0 chr11 19841270 19841299 -130942254 + AT_rich Low_complexity Low_complexity 1 29 0 272 348 68 0 chr11 19841581 19841699 -130941854 - MIR3 SINE MIR -29 179 54 471 204 0 0 chr11 19842362 19842455 -130941098 + MLT1I LTR MaLR 315 407 -2 338 333 69 23 chr11 19842768 19842942 -130940611 - MER5A DNA MER1_type 0 189 8 1082 285 31 29 chr11 19843025 19843474 -130940079 - LTR16A1 LTR ERVL -2 455 6 2152 186 86 49 chr11 19843558 19844151 -130939402 - L1MB7 LINE L1 -58 6126 5512 818 324 7 4 chr11 19844155 19844436 -130939117 - HERV16 LTR ERVL -2473 3181 2900 1154 311 78 34 chr11 19844454 19845221 -130938332 - HERV16 LTR ERVL -2640 2356 1781 354 218 0 0 chr11 19845251 19845338 -130938215 - L1MC4 LINE L1 0 8042 7956 1732 231 78 25 chr11 19845347 19845862 -130937691 - L1MC4 LINE L1 -335 7707 7166 428 281 14 13 chr11 19846295 19846455 -130937098 - L1M4 LINE L1 -5722 924 543 438 255 46 0 chr11 19846830 19846983 -130936570 - L1M4 LINE L1 -6382 160 1 609 143 45 30 chr11 19847034 19847167 -130936386 - L1MA7 LINE L1 -220 6071 5937 820 292 44 49 chr11 19847300 19847731 -130935822 + LTR33 LTR ERVL 93 521 0 1923 161 138 5 chr11 19848651 19849029 -130934524 - MSTA LTR MaLR 0 428 1 907 336 90 4 chr11 19849231 19849719 -130933834 - L2 LINE L2 -2133 1181 652 23 86 0 0 chr11 19850038 19850096 -130933457 + AT_rich Low_complexity Low_complexity 1 58 0 2418 170 7 49 chr11 19850527 19850808 -130932745 + MER54A LTR ERVL 1 250 -651 2355 106 0 0 chr11 19850808 19851110 -130932443 - AluSx SINE Alu -10 302 1 2418 170 7 49 chr11 19851110 19851335 -130932218 + MER54A LTR ERVL 250 483 -418 1700 160 50 6 chr11 19851336 19851654 -130931899 + L1MA4 LINE L1 5953 6284 -16 2105 137 28 0 chr11 19852740 19853061 -130930492 - L1PB1 LINE L1 -2 6149 5820 4404 242 67 35 chr11 19853370 19853923 -130929630 + L1MC2 LINE L1 888 1422 -5004 7768 45 6 0 chr11 19853923 19855193 -130928360 - L1PA5 LINE L1 -3 6151 4879 4404 242 67 35 chr11 19855193 19856710 -130926843 + L1MC2 LINE L1 1422 3233 -3193 2264 122 0 0 chr11 19856710 19857021 -130926532 + AluSx SINE Alu 1 311 -1 4404 242 67 35 chr11 19857021 19857783 -130925770 + L1MC2 LINE L1 3233 3969 -2457 934 248 16 16 chr11 19857825 19858079 -130925474 + MER74B LTR ERVL 59 312 -310 3792 212 14 14 chr11 19858080 19859021 -130924532 + L1MC2 LINE L1 5427 6364 -260 1137 243 6 54 chr11 19859178 19859495 -130924058 + AluSx SINE Alu 1 302 0 464 330 46 27 chr11 19859512 19859773 -130923780 + L1M3d LINE L1 6 271 -5620 427 324 88 49 chr11 19859748 19859952 -130923601 + L1M3de LINE L1 572 783 -5870 * 544 316 41 10 chr11 19859962 19860158 -130923395 + L1M3de LINE L1 814 1015 -5638 448 225 11 11 chr11 19860178 19860267 -130923286 + L1MA7 LINE L1 1111 1199 -6287 295 287 53 21 chr11 19860270 19860364 -130923189 + L1MA7 LINE L1 1752 1848 -5638 349 257 30 30 chr11 19860371 19860472 -130923081 + L1M3de LINE L1 382 482 -6287 432 280 0 20 chr11 19860481 19860581 -130922972 + L1M3de LINE L1 385 482 -6287 4359 229 26 24 chr11 19860619 19861615 -130921938 + L1M3de LINE L1 1076 2073 -4696 979 254 8 12 chr11 19861610 19861858 -130921695 + L1M3de LINE L1 2350 2596 -4253 * 24504 162 28 26 chr11 19861859 19865822 -130917731 + L1PA10 LINE L1 1 4054 -2429 216 0 0 0 chr11 19865822 19865846 -130917707 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 24504 162 28 26 chr11 19865846 19868283 -130915270 + L1PA10 LINE L1 4054 6483 0 798 246 124 46 chr11 19868336 19868876 -130914677 + L1MA7 LINE L1 2977 3558 -4007 9782 180 31 31 chr11 19868880 19869796 -130913757 + L1MA7 LINE L1 3858 4773 -2958 1427 103 0 0 chr11 19869796 19869981 -130913572 + AluSp SINE Alu 128 312 -1 9782 180 31 31 chr11 19869981 19871772 -130911781 + L1MA7 LINE L1 4773 6563 -1168 1148 149 0 61 chr11 19871772 19872000 -130911553 + L1MA6 LINE L1 6074 6287 -13 9782 180 31 31 chr11 19872000 19872916 -130910637 + L1MA7 LINE L1 6563 7478 -253 6502 103 17 0 chr11 19872916 19874476 -130909077 + L1PA14 LINE L1 4577 6159 -2 2696 112 2 25 chr11 19874476 19874870 -130908683 + L1PA14 LINE L1 5770 6161 0 9782 180 31 31 chr11 19874870 19874896 -130908657 + L1MA7 LINE L1 7477 7502 -229 1785 154 0 31 chr11 19874896 19875189 -130908364 + AluSx SINE Alu 7 290 -22 9782 180 31 31 chr11 19875189 19875204 -130908349 + L1MA7 LINE L1 7502 7516 -215 2116 73 8 0 chr11 19875204 19875465 -130908088 - L1PA10 LINE L1 -9 6159 5897 9782 180 31 31 chr11 19875465 19875610 -130907943 + L1MA7 LINE L1 7516 7698 -33 3479 211 47 18 chr11 19875628 19876572 -130906981 + L1ME2 LINE L1 5191 6163 -1 352 329 70 13 chr11 19878615 19878773 -130904780 - MIR SINE MIR -76 186 20 278 352 56 0 chr11 19879123 19879231 -130904322 + L2 LINE L2 3146 3259 -13 180 97 0 0 chr11 19879242 19879273 -130904280 + (CATG)n Simple_repeat Simple_repeat 2 32 0 681 282 31 5 chr11 19879886 19880081 -130903472 - MIR SINE MIR -48 214 15 2458 56 0 20 chr11 19880569 19880871 -130902682 - AluY SINE Alu -15 296 1 188 372 74 14 chr11 19880982 19881130 -130902423 - MIR3 SINE MIR -37 171 15 252 269 179 14 chr11 19881390 19881535 -130902018 + MLT1J LTR MaLR 227 395 -116 1073 234 79 89 chr11 19882009 19882402 -130901151 + LTR33 LTR ERVL 131 519 -2 249 302 17 35 chr11 19883359 19883475 -130900078 - HAL1b LINE L1 -452 896 783 183 80 0 0 chr11 19883590 19883615 -130899938 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 286 316 105 0 chr11 19883619 19883714 -130899839 - L2 LINE L2 -18 3295 3191 403 277 95 19 chr11 19884052 19884315 -130899238 - L1MEd LINE L1 -797 1693 1286 482 260 73 0 chr11 19884499 19884649 -130898904 + MIR SINE MIR 81 241 -21 728 219 118 32 chr11 19884651 19884930 -130898623 - L1MEd LINE L1 -4924 1195 893 1590 11 6 0 chr11 19885032 19885210 -130898343 - L1PA4 LINE L1 -220 5935 5757 446 288 139 0 chr11 19885521 19885712 -130897841 + MIR SINE MIR 33 249 -13 2443 48 3 35 chr11 19885716 19886029 -130897524 - AluY SINE Alu -8 303 1 216 250 47 16 chr11 19886219 19886283 -130897270 - L2 LINE L2 0 3272 3207 2650 90 55 3 chr11 19886599 19886945 -130896608 + THE1B LTR MaLR 1 364 0 903 187 6 22 chr11 19889225 19889407 -130894146 + MIR SINE MIR 79 257 -5 269 279 154 22 chr11 19889771 19889938 -130893615 - MIR3 SINE MIR -62 200 8 354 23 0 0 chr11 19891434 19891477 -130892076 + (TG)n Simple_repeat Simple_repeat 1 43 0 310 308 106 0 chr11 19892807 19892911 -130890642 + L2 LINE L2 3150 3264 -8 207 0 0 0 chr11 19892913 19892936 -130890617 + (TGAA)n Simple_repeat Simple_repeat 4 26 0 282 294 24 12 chr11 19892950 19893035 -130890518 - MIR SINE MIR -103 105 20 1156 148 16 40 chr11 19893167 19893417 -130890136 + Charlie5 DNA MER1_type 2377 2620 0 450 307 40 3 chr11 19893907 19894069 -130889484 - MIR SINE MIR -62 146 19 549 129 12 0 chr11 19894991 19895076 -130888477 - MER5A DNA MER1_type -103 86 1 252 261 75 53 chr11 19895440 19895600 -130887953 + MIR SINE MIR 49 204 -58 188 194 296 31 chr11 19895721 19895819 -130887734 + MER5A DNA MER1_type 43 166 -23 * 458 220 40 0 chr11 19895744 19895844 -130887709 - MER5A DNA MER1_type -77 112 9 22 0 0 0 chr11 19896323 19896345 -130887208 + AT_rich Low_complexity Low_complexity 1 22 0 1116 62 0 0 chr11 19896351 19896480 -130887073 - AluSq/x SINE Alu -183 129 1 1256 128 0 0 chr11 19896483 19896662 -130886891 + AluSg/x SINE Alu 127 305 -7 1640 176 7 23 chr11 19897217 19897523 -130886030 + AluJo SINE Alu 1 301 -11 213 39 0 0 chr11 19897632 19897658 -130885895 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 267 314 18 136 chr11 19897663 19898052 -130885501 - L2 LINE L2 -18 3254 2912 183 286 89 0 chr11 19898091 19898147 -130885406 - MIR3 SINE MIR -9 199 139 198 0 0 0 chr11 19898513 19898535 -130885018 + (TG)n Simple_repeat Simple_repeat 1 22 0 2151 101 14 0 chr11 19898808 19899109 -130884444 + AluSc SINE Alu 1 305 0 385 296 68 12 chr11 19900025 19900187 -130883366 + MIR SINE MIR 13 183 -79 507 33 0 0 chr11 19900356 19900417 -130883136 + (TCCC)n Simple_repeat Simple_repeat 1 61 0 884 168 0 11 chr11 19900417 19900596 -130882957 + CT-rich Low_complexity Low_complexity 3 179 0 499 294 31 25 chr11 19900935 19901095 -130882458 - MIR SINE MIR -71 191 31 550 239 97 23 chr11 19901122 19901298 -130882255 - MIR SINE MIR -54 208 20 270 327 44 6 chr11 19901390 19901549 -130882004 + L3 LINE CR1 1306 1470 -107 309 242 135 94 chr11 19901726 19901970 -130881583 + MIR SINE MIR 6 259 -3 328 233 23 23 chr11 19902578 19902664 -130880889 + MIR SINE MIR 59 144 -118 208 291 55 27 chr11 19903195 19903305 -130880248 - MIR SINE MIR -50 212 100 314 183 14 0 chr11 19903464 19903535 -130880018 + CT-rich Low_complexity Low_complexity 2 73 0 214 300 25 0 chr11 19905797 19905877 -130877676 - MIR3 SINE MIR -9 199 118 * 215 167 0 0 chr11 19905847 19905883 -130877670 - MIR SINE MIR -116 146 111 231 222 0 19 chr11 19906136 19906190 -130877363 - MIR3 SINE MIR -1 207 155 1751 151 30 0 chr11 19906200 19906493 -130877060 - AluJb SINE Alu 0 310 10 3159 20 3 8 chr11 19906614 19907005 -130876548 - L1PA4 LINE L1 -743 5403 5015 6165 32 7 1 chr11 19907005 19907763 -130875790 + L1PA4 LINE L1 5411 6177 0 1413 83 9 46 chr11 19907777 19907994 -130875559 + L1PA8A LINE L1 5922 6130 -1 1371 164 0 0 chr11 19908250 19908458 -130875095 - AluSq SINE Alu -25 288 81 2053 91 0 0 chr11 19908576 19908839 -130874714 + AluSc SINE Alu 38 300 -9 250 252 55 110 chr11 19909978 19910039 -130873514 - MIR SINE MIR -77 185 133 2553 52 0 3 chr11 19910039 19910348 -130873205 + AluY SINE Alu 1 308 -3 250 252 55 110 chr11 19910348 19910413 -130873140 - MIR SINE MIR -129 133 66 984 275 50 45 chr11 19910795 19911217 -130872336 + L2 LINE L2 2882 3305 -8 532 138 23 0 chr11 19913086 19913173 -130870380 - L1MD3 LINE L1 -14 7981 7893 351 245 0 32 chr11 19913438 19913488 -130870065 - MIR SINE MIR -58 150 103 583 113 0 0 chr11 19913488 19913568 -130869985 - MADE1 DNA Mariner 0 80 1 351 245 0 32 chr11 19913568 19913611 -130869942 - MIR SINE MIR -105 103 60 27 29 0 0 chr11 19915120 19915154 -130868399 + AT_rich Low_complexity Low_complexity 1 34 0 195 42 0 0 chr11 19915670 19915694 -130867859 + (CCG)n Simple_repeat Simple_repeat 2 25 0 25 83 0 0 chr11 19916001 19916061 -130867492 + GC_rich Low_complexity Low_complexity 1 60 0 183 80 0 0 chr11 19916163 19916188 -130867365 + (T)n Simple_repeat Simple_repeat 1 25 0 334 226 151 19 chr11 19917967 19918073 -130865480 - MIR SINE MIR -63 145 26 2416 102 0 0 chr11 19919435 19919739 -130863814 - AluSg SINE Alu -6 304 1 2178 116 7 0 chr11 19920002 19920303 -130863250 + AluSx SINE Alu 1 303 -9 229 255 47 57 chr11 19920304 19920410 -130863143 - L3 LINE CR1 -57 1520 1416 283 270 43 17 chr11 19920482 19920597 -130862956 + L2 LINE L2 3154 3271 -1 187 323 15 0 chr11 19920640 19920705 -130862848 + L2 LINE L2 3186 3251 -21 432 263 15 23 chr11 19920786 19920919 -130862634 - L2 LINE L2 0 3313 3182 27 0 0 0 chr11 19921005 19921032 -130862521 + AT_rich Low_complexity Low_complexity 1 27 0 2440 87 0 0 chr11 19921793 19922091 -130861462 + AluY SINE Alu 1 298 -13 11571 184 23 10 chr11 19922208 19925653 -130857900 + L1PA16 LINE L1 2680 6163 -3 21 36 0 0 chr11 19925671 19925699 -130857854 + AT_rich Low_complexity Low_complexity 1 28 0 976 191 0 0 chr11 19925796 19925964 -130857589 - FRAM SINE Alu -8 168 1 657 246 55 35 chr11 19926040 19926296 -130857257 + MIR SINE MIR 1 261 -1 198 0 0 0 chr11 19926576 19926598 -130856955 + (T)n Simple_repeat Simple_repeat 1 22 0 431 257 9 9 chr11 19926851 19926964 -130856589 + MIR SINE MIR 33 145 -63 324 291 94 0 chr11 19927134 19927251 -130856302 + MIR3 SINE MIR 77 204 -4 188 182 0 23 chr11 19927893 19927937 -130855616 + L2 LINE L2 1955 1997 -1317 355 238 149 18 chr11 19928217 19928385 -130855168 - MIR SINE MIR -50 212 23 2332 132 8 35 chr11 19928853 19929224 -130854329 - THE1B LTR MaLR -3 361 1 578 268 109 14 chr11 19929639 19929859 -130853694 - MIR SINE MIR 0 262 22 277 203 0 17 chr11 19931700 19931759 -130851794 - MLT1J2 LTR MaLR -366 84 27 236 326 11 11 chr11 19931868 19931957 -130851596 + L2 LINE L2 3184 3272 0 382 288 66 60 chr11 19931999 19932301 -130851252 + L3 LINE CR1 716 1019 -558 819 196 0 0 chr11 19932345 19932483 -130851070 - FAM SINE Alu -22 163 26 2409 93 3 0 chr11 19932538 19932839 -130850714 - AluSp SINE Alu -11 302 1 265 250 155 0 chr11 19932957 19933041 -130850512 - MIR SINE MIR -95 113 17 1549 140 121 34 chr11 19933330 19933594 -130849959 - AluJo SINE Alu -25 287 1 703 132 8 8 chr11 19933941 19934070 -130849483 + (TCTA)n Simple_repeat Simple_repeat 4 132 0 457 240 25 8 chr11 19934747 19934868 -130848685 - FLAM_C SINE Alu -20 123 1 227 245 0 0 chr11 19935037 19935090 -130848463 + MIR3 SINE MIR 151 203 -5 224 271 173 38 chr11 19935548 19935681 -130847872 - MIR3 SINE MIR -32 176 26 935 289 70 13 chr11 19935998 19936545 -130847008 - MLT2E LTR ERVL 0 628 1 1511 87 0 0 chr11 19936955 19937150 -130846403 - MER107 DNA MER1_type -2 195 1 314 288 12 12 chr11 19937506 19937669 -130845884 + (TA)n Simple_repeat Simple_repeat 2 164 0 2203 195 81 53 chr11 19939445 19940015 -130843538 - MLT1E LTR MaLR 0 593 8 203 196 0 20 chr11 19940731 19940782 -130842771 + MIR SINE MIR 76 125 -137 22 35 0 0 chr11 19941468 19941497 -130842056 + AT_rich Low_complexity Low_complexity 1 29 0 234 191 0 0 chr11 19941834 19941881 -130841672 + (TATG)n Simple_repeat Simple_repeat 1 47 0 487 269 35 0 chr11 19943679 19943824 -130839729 + MER103 DNA DNA 8 157 -9 1074 209 23 9 chr11 19943899 19944119 -130839434 + MER58A DNA MER1_type 2 224 0 1840 174 10 0 chr11 19945172 19945466 -130838087 + AluJb SINE Alu 1 297 -15 384 274 38 84 chr11 19948295 19948361 -130835192 - MIR SINE MIR -15 247 179 593 276 17 0 chr11 19948361 19948535 -130835018 + MER104 DNA MER2_type 4 180 0 384 274 38 84 chr11 19948535 19948705 -130834848 - MIR SINE MIR -83 179 22 381 286 71 26 chr11 19948749 19948903 -130834650 - MIR SINE MIR -82 180 20 364 272 39 73 chr11 19949272 19949478 -130834075 + L1MB5 LINE L1 5727 5925 -249 * 1762 70 4 4 chr11 19949306 19949535 -130834018 + L1PA10 LINE L1 5754 5982 -186 21 57 0 0 chr11 19949895 19949930 -130833623 + AT_rich Low_complexity Low_complexity 1 35 0 698 97 0 19 chr11 19950998 19951101 -130832452 - AluSq/x SINE Alu -173 139 39 353 67 0 0 chr11 19951145 19951190 -130832363 + (TG)n Simple_repeat Simple_repeat 2 46 0 2101 150 62 0 chr11 19951258 19951597 -130831956 - MLT1B LTR MaLR -24 366 7 436 295 134 49 chr11 19951603 19952355 -130831198 - HAL1 LINE L1 -872 1635 820 987 218 15 0 chr11 19952886 19953092 -130830461 - MER3 DNA MER1_type 0 209 1 277 282 0 0 chr11 19953442 19953513 -130830040 - MIR SINE MIR -67 195 125 336 276 155 0 chr11 19954527 19954643 -130828910 - MIR SINE MIR -108 154 21 517 348 53 42 chr11 19955101 19955704 -130827849 + L2 LINE L2 2603 3221 -51 383 292 67 34 chr11 19955967 19956117 -130827436 + MIR3 SINE MIR 25 183 -25 2456 38 31 3 chr11 19956117 19956409 -130827144 - AluY SINE Alu -11 300 1 383 292 67 34 chr11 19956409 19956436 -130827117 + MIR3 SINE MIR 183 208 0 2294 100 3 0 chr11 19957048 19957358 -130826195 + AluSp SINE Alu 1 311 -2 6601 150 8 12 chr11 19957359 19958524 -130825029 - L1MC1 LINE L1 -7 6326 5171 234 306 74 93 chr11 19959587 19959803 -130823750 + L3 LINE CR1 1169 1380 -197 1659 246 18 15 chr11 19960115 19960509 -130823044 - L1ME1 LINE L1 -53 6113 5719 856 194 95 47 chr11 19960492 19960543 -130823010 + L1MCa LINE L1 20 67 -6359 * 2111 105 13 13 chr11 19960543 19960847 -130822706 + AluY SINE Alu 1 304 -7 856 194 95 47 chr11 19960847 19961027 -130822526 + L1MCa LINE L1 67 262 -6164 3185 168 20 2 chr11 19961028 19961630 -130821923 + L1MCa LINE L1 783 1395 -5031 1716 204 48 70 chr11 19961638 19961993 -130821560 - L1ME1 LINE L1 -423 5743 5401 2176 111 10 0 chr11 19961993 19962290 -130821263 - AluSc SINE Alu -9 300 1 1716 204 48 70 chr11 19962290 19962435 -130821118 - L1ME1 LINE L1 -765 5401 5254 228 244 24 37 chr11 19962477 19962559 -130820994 - L1MDb LINE L1 -5515 894 814 1721 189 3 10 chr11 19962830 19963121 -130820432 - AluJb SINE Alu -23 289 1 195 250 192 29 chr11 19963122 19963226 -130820327 + MER5A DNA MER1_type 47 167 -22 1099 219 26 87 chr11 19963371 19963750 -130819803 - L1ME3 LINE L1 -31 6131 5776 196 167 0 153 chr11 19964033 19964105 -130819448 + MIR SINE MIR 82 142 -120 771 176 72 0 chr11 19964144 19964297 -130819256 + MER53 DNA DNA 22 185 -4 209 323 21 0 chr11 19964565 19964658 -130818895 + MIR SINE MIR 43 137 -125 196 265 106 69 chr11 19964718 19964907 -130818646 - L2 LINE L2 -91 3222 3027 228 224 75 0 chr11 19965189 19965256 -130818297 + MER5C DNA MER1_type 43 114 -210 241 176 0 68 chr11 19965317 19965391 -130818162 + MER5C DNA MER1_type 250 318 -6 366 337 62 16 chr11 19965401 19965594 -130817959 + MIR SINE MIR 29 230 -32 756 229 212 31 chr11 19965638 19966057 -130817496 - L2 LINE L2 0 3313 2819 3124 208 36 11 chr11 19966422 19967058 -130816495 - MER82 DNA MER2_type 0 653 2 2029 139 10 3 chr11 19967213 19967508 -130816045 - AluJb SINE Alu -15 297 1 814 232 31 35 chr11 19967850 19968104 -130815449 + MIR SINE MIR 10 262 0 283 258 125 33 chr11 19968213 19968333 -130815220 + MIR3 SINE MIR 2 132 -76 328 316 68 0 chr11 19968369 19968502 -130815051 - MIR SINE MIR -57 205 64 2016 93 3 60 chr11 19968720 19969021 -130814532 - AluSg SINE Alu -14 296 13 2121 125 98 47 chr11 19969733 19970140 -130813413 - MSTA LTR MaLR 0 428 1 186 43 0 0 chr11 19970209 19970232 -130813321 + (TG)n Simple_repeat Simple_repeat 1 23 0 321 331 63 7 chr11 19970440 19970582 -130812971 + L2 LINE L2 3123 3272 0 236 250 0 89 chr11 19971283 19971395 -130812158 - MIR SINE MIR -71 191 90 513 227 147 1 chr11 19971645 19971824 -130811729 - L1ME1 LINE L1 0 6164 5974 18287 91 9 0 chr11 19972678 19975995 -130807558 + L1PA8 LINE L1 2839 6172 0 2241 107 7 0 chr11 19976221 19976519 -130807034 + AluSx SINE Alu 4 303 -9 318 195 142 0 chr11 19977996 19978109 -130805444 - MER113 DNA MER1_type? -311 210 82 620 214 184 5 chr11 19978114 19978315 -130805238 + MIR SINE MIR 2 238 -24 790 231 232 16 chr11 19979838 19980251 -130803302 + L2 LINE L2 2776 3285 -28 186 43 0 0 chr11 19980645 19980668 -130802885 + (CTGGGG)n Simple_repeat Simple_repeat 2 24 0 2247 131 33 25 chr11 19980713 19981072 -130802481 + THE1B LTR MaLR 1 362 -2 2495 132 45 26 chr11 19981340 19981764 -130801789 - MSTB1 LTR MaLR 0 432 1 250 269 15 0 chr11 19981848 19981915 -130801638 + L2 LINE L2 3238 3305 -8 256 247 26 26 chr11 19982413 19982490 -130801063 + CT-rich Low_complexity Low_complexity 4 80 0 243 88 0 0 chr11 19982929 19982963 -130800590 + (T)n Simple_repeat Simple_repeat 1 34 0 279 0 0 0 chr11 19983223 19983254 -130800299 + (CAG)n Simple_repeat Simple_repeat 3 33 0 1108 86 43 21 chr11 19983694 19983880 -130799673 + L1MA7 LINE L1 6102 6291 0 262 277 139 0 chr11 19983955 19984056 -130799497 - L2 LINE L2 -1 3312 3198 1613 225 71 46 chr11 19984145 19984596 -130798957 + MLT1F1 LTR MaLR 74 539 -28 1612 189 51 43 chr11 19984596 19984806 -130798747 - MLT1A2 LTR MaLR 0 374 158 2110 126 0 13 chr11 19984806 19985116 -130798437 - AluSx SINE Alu -6 306 1 1612 189 51 43 chr11 19985116 19985276 -130798277 - MLT1A2 LTR MaLR -216 158 1 1613 225 71 46 chr11 19985276 19985304 -130798249 + MLT1F1 LTR MaLR 539 565 -2 419 321 104 8 chr11 19985440 19985680 -130797873 - L3 LINE CR1 -12 1565 1303 189 0 0 0 chr11 19986665 19986686 -130796867 + (TTCA)n Simple_repeat Simple_repeat 1 21 0 2455 98 0 0 chr11 19987347 19987654 -130795899 + AluSx SINE Alu 1 307 -5 297 220 136 52 chr11 19987669 19987860 -130795693 + MIR SINE MIR 56 262 0 419 284 84 21 chr11 19988501 19988691 -130794862 - MIR SINE MIR -33 229 28 1413 245 139 44 chr11 19988703 19989276 -130794277 - MLT1G LTR MaLR 0 590 1 2678 24 0 7 chr11 19989386 19989684 -130793869 + AluY SINE Alu 1 296 -15 1283 89 0 11 chr11 19990419 19990598 -130792955 + L1PA11 LINE L1 5995 6171 -3 222 37 0 0 chr11 19990640 19990667 -130792886 + (TC)n Simple_repeat Simple_repeat 2 28 0 211 189 0 0 chr11 19990668 19990705 -130792848 + (TG)n Simple_repeat Simple_repeat 2 38 0 295 276 92 11 chr11 19990859 19991033 -130792520 - L1ME LINE L1 -323 5798 5611 1926 149 21 0 chr11 19991078 19991366 -130792187 - AluJb SINE Alu -18 294 1 597 297 34 22 chr11 19991452 19991703 -130791850 - MIR SINE MIR 0 262 2 1000 217 45 20 chr11 19992447 19992691 -130790862 - AluJo SINE Alu -8 304 55 510 301 95 35 chr11 19992714 19993113 -130790440 + L2 LINE L2 2885 3307 -6 1198 190 24 9 chr11 19993206 19993417 -130790136 + MER58A DNA MER1_type 1 214 -10 25 0 0 0 chr11 19993778 19993803 -130789750 + AT_rich Low_complexity Low_complexity 1 25 0 341 237 47 91 chr11 19994315 19994568 -130788985 - L1ME4a LINE L1 -28 6093 5852 598 263 7 7 chr11 19994584 19994736 -130788817 + MIR SINE MIR 2 153 -109 215 317 8 25 chr11 19994811 19994931 -130788622 + MIR SINE MIR 145 262 0 4832 135 14 37 chr11 19995086 19996307 -130787246 - L1PA15 LINE L1 -3 6162 4914 1950 124 88 28 chr11 19996307 19996661 -130786892 - THE1C LTR MaLR 0 375 1 4832 135 14 37 chr11 19996661 19996931 -130786622 - L1PA15 LINE L1 -1251 4914 4642 1630 179 3 50 chr11 19996931 19997250 -130786303 - AluJo SINE Alu -8 304 1 4832 135 14 37 chr11 19997250 19997275 -130786278 - L1PA15 LINE L1 -1523 4642 4618 393 306 92 5 chr11 19997468 19997664 -130785889 + MIR SINE MIR 50 262 0 1139 230 325 9 chr11 19997807 19998389 -130785164 + LTR50 LTR ERVL 16 781 -14 236 163 41 0 chr11 19999045 19999094 -130784459 + (TCTG)n Simple_repeat Simple_repeat 4 54 0 330 123 0 0 chr11 19999095 19999152 -130784401 + (TC)n Simple_repeat Simple_repeat 2 58 0 300 70 0 0 chr11 19999152 19999195 -130784358 + (CA)n Simple_repeat Simple_repeat 1 43 0 2131 207 37 25 chr11 19999599 20000110 -130783443 - L1MD3 LINE L1 0 7995 7479 340 248 26 26 chr11 20000275 20000388 -130783165 + MIR SINE MIR 20 132 -130 936 167 83 86 chr11 20000650 20000945 -130782608 - L1ME1 LINE L1 0 6184 5881 550 192 34 20 chr11 20000947 20001093 -130782460 - L1MA10 LINE L1 -7 6327 6180 553 253 116 27 chr11 20001433 20001658 -130781895 + MIR SINE MIR 7 251 -11 1631 218 70 14 chr11 20002132 20002545 -130781008 - MER63B DNA MER1_type 0 436 1 864 250 82 55 chr11 20003251 20003364 -130780189 + L1ME2 LINE L1 5456 5565 -599 15565 119 30 9 chr11 20003364 20005731 -130777822 - Tigger1 DNA MER2_type 0 2418 3 864 250 82 55 chr11 20005731 20006201 -130777352 + L1ME2 LINE L1 5565 6139 -25 2826 127 12 23 chr11 20006201 20006628 -130776925 - MSTB LTR MaLR 0 426 5 864 250 82 55 chr11 20006628 20006654 -130776899 + L1ME2 LINE L1 6139 6163 -1 436 212 0 0 chr11 20007046 20007131 -130776422 - MLT1D LTR MaLR -17 488 404 786 229 20 35 chr11 20007141 20007342 -130776211 - MLT1D LTR MaLR -264 241 44 2484 67 0 0 chr11 20007661 20007960 -130775593 - AluY SINE Alu -12 299 1 1630 206 46 3 chr11 20008194 20008520 -130775033 - MER58B DNA MER1_type 0 341 2 322 333 80 9 chr11 20008562 20008775 -130774778 - L3 LINE CR1 -3 1574 1347 507 225 0 0 chr11 20009844 20009933 -130773620 + MER81 DNA DNA 1 89 -25 635 215 0 51 chr11 20011285 20011443 -130772110 - MIR SINE MIR -40 222 73 1335 191 148 13 chr11 20012558 20012861 -130770692 - MER2 DNA MER2_type 0 344 1 554 227 0 74 chr11 20012994 20013157 -130770396 + MER117 DNA MER1_type 20 170 -27 342 288 123 5 chr11 20013757 20013956 -130769597 - MIR SINE MIR -33 229 1 834 134 67 34 chr11 20014739 20014888 -130768665 + FRAM SINE Alu 1 154 -12 396 296 81 17 chr11 20014931 20015103 -130768450 + L2 LINE L2 3094 3276 -37 344 232 11 0 chr11 20015150 20015245 -130768308 - L1ME4a LINE L1 -240 5881 5786 2338 4 0 0 chr11 20015803 20016050 -130767503 - AluYa5 SINE Alu -22 289 43 304 309 105 19 chr11 20016169 20016331 -130767222 + L2 LINE L2 2910 3085 -187 375 199 321 8 chr11 20016437 20016568 -130766985 + MER5B DNA MER1_type 3 174 -4 361 188 29 0 chr11 20017457 20017526 -130766027 - MIR SINE MIR -56 152 82 498 90 0 0 chr11 20017875 20017942 -130765611 - LTR29 LTR ERV1 -66 556 490 25 31 0 0 chr11 20018032 20018064 -130765489 + AT_rich Low_complexity Low_complexity 1 32 0 498 266 112 19 chr11 20019253 20019467 -130764086 + MIR SINE MIR 17 250 -12 234 250 95 12 chr11 20020546 20020630 -130762923 - L2 LINE L2 -38 3234 3144 2512 124 30 44 chr11 20020754 20021188 -130762365 + MSTA LTR MaLR 1 428 0 458 324 81 34 chr11 20021863 20022514 -130761039 + HAL1 LINE L1 1083 1764 -743 982 66 0 0 chr11 20023461 20023582 -130759971 - L1MA1 LINE L1 -7 6295 6175 935 312 32 12 chr11 20024260 20024766 -130758787 + L1M4 LINE L1 3713 4228 -1918 379 296 45 28 chr11 20024942 20025229 -130758324 + L1M4 LINE L1 5039 5330 -816 284 152 167 0 chr11 20025325 20025391 -130758162 - MLT1J1 LTR MaLR -125 321 245 480 274 153 14 chr11 20025537 20025820 -130757733 - L2 LINE L2 -251 3062 2748 7475 177 26 3 chr11 20025854 20028054 -130755499 + L1PA13 LINE L1 3924 6163 0 312 247 14 0 chr11 20028576 20028649 -130754904 + L2 LINE L2 3240 3313 0 280 258 15 0 chr11 20028959 20029025 -130754528 + L2 LINE L2 2989 3055 -217 591 265 66 20 chr11 20029136 20029332 -130754221 + MIR SINE MIR 2 206 -56 313 353 83 6 chr11 20029332 20029488 -130754065 + L2 LINE L2 3104 3271 -1 705 210 61 17 chr11 20029792 20029973 -130753580 - MER5A DNA MER1_type 0 189 1 211 238 32 0 chr11 20030039 20030102 -130753451 - L2 LINE L2 -231 3041 2977 548 321 23 14 chr11 20030282 20030493 -130753060 + MIR SINE MIR 11 214 -48 200 270 16 16 chr11 20030942 20031005 -130752548 - L2 LINE L2 -52 3220 3158 730 247 36 18 chr11 20031487 20031710 -130751843 - L2 LINE L2 -233 3080 2854 567 271 102 25 chr11 20033533 20033769 -130749784 - MIR SINE MIR -8 254 1 1752 178 17 3 chr11 20033792 20033967 -130749586 - AluJo SINE Alu -15 297 115 468 0 0 0 chr11 20033967 20034019 -130749534 + (TG)n Simple_repeat Simple_repeat 1 52 0 1752 178 17 3 chr11 20034019 20034135 -130749418 - AluJo SINE Alu -197 115 2 189 0 0 0 chr11 20034838 20034859 -130748694 + (TA)n Simple_repeat Simple_repeat 1 21 0 2415 90 0 0 chr11 20034859 20035150 -130748403 - AluY SINE Alu -15 296 3 488 237 155 104 chr11 20035481 20035835 -130747718 - LTR33A LTR ERVL -3 520 149 27 49 0 0 chr11 20036691 20036732 -130746821 + AT_rich Low_complexity Low_complexity 1 41 0 286 240 120 30 chr11 20036830 20036930 -130746623 + L2 LINE L2 3200 3308 -5 355 302 67 16 chr11 20036955 20037210 -130746343 - L1ME4a LINE L1 -173 5948 5681 411 205 51 60 chr11 20037314 20037431 -130746122 + L2 LINE L2 3190 3305 -8 189 0 0 0 chr11 20037830 20037851 -130745702 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 393 136 0 0 chr11 20038019 20038085 -130745468 + (TG)n Simple_repeat Simple_repeat 1 66 0 263 305 21 11 chr11 20038678 20038773 -130744780 - MIR SINE MIR -128 134 39 993 244 18 0 chr11 20038906 20039131 -130744422 + MIR SINE MIR 11 239 -23 732 299 147 20 chr11 20039460 20040092 -130743461 + L2 LINE L2 2540 3305 -8 208 210 0 65 chr11 20040659 20040721 -130742832 - MIR SINE MIR -65 143 86 213 281 73 21 chr11 20040953 20041049 -130742504 + L2 LINE L2 3134 3234 -38 483 201 115 63 chr11 20041193 20041367 -130742186 + MIR SINE MIR 67 249 -13 226 163 41 0 chr11 20041936 20041985 -130741568 + L2 LINE L2 3263 3313 0 972 313 98 23 chr11 20042419 20043190 -130740363 + L2 LINE L2 2472 3313 0 365 176 0 12 chr11 20044366 20044451 -130739102 + GA-rich Low_complexity Low_complexity 1 84 0 349 138 35 0 chr11 20044787 20044845 -130738708 - MLT2B1 LTR ERVL 0 520 461 * 488 344 14 188 chr11 20044841 20045117 -130738436 - MLT2D LTR ERVL -186 228 1 410 279 142 6 chr11 20045181 20045364 -130738189 - MIR SINE MIR -52 210 3 517 284 83 32 chr11 20046413 20046691 -130736862 + L3 LINE CR1 1266 1557 -20 300 297 7 14 chr11 20047980 20048125 -130735428 + (TG)n Simple_repeat Simple_repeat 1 144 0 469 268 32 0 chr11 20050208 20050331 -130733222 + MIR SINE MIR 8 134 -128 410 221 117 3 chr11 20050533 20050662 -130732891 - MIR SINE MIR -60 148 22 201 74 0 0 chr11 20051097 20051124 -130732429 + (TCC)n Simple_repeat Simple_repeat 1 27 0 282 29 0 0 chr11 20051863 20051898 -130731655 + (ATG)n Simple_repeat Simple_repeat 1 35 0 270 0 0 0 chr11 20053658 20053688 -130729865 + (A)n Simple_repeat Simple_repeat 1 30 0 267 31 0 0 chr11 20053833 20053865 -130729688 + (TG)n Simple_repeat Simple_repeat 1 32 0 22 56 0 0 chr11 20053905 20053941 -130729612 + AT_rich Low_complexity Low_complexity 1 36 0 458 347 76 13 chr11 20055281 20055506 -130728047 + MIR SINE MIR 14 252 -10 322 328 44 10 chr11 20055744 20055948 -130727605 - L1ME4a LINE L1 -188 5933 5723 476 307 79 33 chr11 20055985 20056101 -130727452 - L2 LINE L2 0 3313 3204 1086 186 45 5 chr11 20056101 20056300 -130727253 + MER3 DNA MER1_type 1 207 -2 476 307 79 33 chr11 20056300 20056424 -130727129 - L2 LINE L2 -109 3204 3062 297 260 7 93 chr11 20056447 20056597 -130726956 - L1ME3 LINE L1 -2 6160 6024 223 191 0 0 chr11 20056616 20056658 -130726895 - L2 LINE L2 -261 3052 3011 242 343 198 8 chr11 20057333 20057581 -130725972 + L2 LINE L2 2374 2668 -646 204 40 0 0 chr11 20058209 20058234 -130725319 + (TTCA)n Simple_repeat Simple_repeat 4 28 0 225 314 179 39 chr11 20058239 20058446 -130725107 - L2 LINE L2 -20 3252 3017 300 206 118 0 chr11 20058555 20058623 -130724930 + MLT1A2 LTR MaLR 1 76 -298 238 280 147 20 chr11 20059234 20059384 -130724169 + MIR SINE MIR 93 261 -1 340 264 0 22 chr11 20060833 20060924 -130722629 + L2 LINE L2 3225 3313 0 2127 183 38 25 chr11 20061930 20062373 -130721180 + MER31B LTR ERV1 1 449 -17 223 234 43 0 chr11 20062683 20062730 -130720823 - L2 LINE L2 -90 3182 3134 353 327 57 61 chr11 20062819 20063082 -130720471 + MIR SINE MIR 1 262 0 192 231 88 88 chr11 20063188 20063279 -130720274 + MIR SINE MIR 41 131 -77 321 250 116 58 chr11 20113859 20114031 -130669522 + L2 LINE L2 2868 3049 -223 221 320 26 13 chr11 20114200 20114311 -130669242 + MIR SINE MIR 35 147 -62 207 261 130 0 chr11 20114395 20114464 -130669089 - MIR SINE MIR 0 262 185 474 209 32 110 chr11 20114464 20114809 -130668744 - L1MD2 LINE L1 -12 6347 5971 15984 47 4 1 chr11 20114910 20116862 -130666691 - L1P LINE L1 -786 5360 3403 202 216 0 0 chr11 20116962 20116999 -130666554 + (CATATA)n Simple_repeat Simple_repeat 2 38 0 205 273 141 25 chr11 20117220 20117341 -130666212 - MIR SINE MIR -12 250 116 288 0 0 0 chr11 20117768 20117800 -130665753 + (TG)n Simple_repeat Simple_repeat 1 32 0 406 294 28 56 chr11 20118305 20118519 -130665034 + MIR SINE MIR 7 214 -48 528 262 70 47 chr11 20118920 20119218 -130664335 - L2 LINE L2 -49 3264 2960 347 239 299 0 chr11 20119234 20119445 -130664108 + L2 LINE L2 2761 3025 -288 22800 78 4 4 chr11 20119558 20122528 -130661025 - L1P LINE L1 -3165 2981 11 6480 121 44 3 chr11 20122567 20123619 -130659934 - L1MA5A LINE L1 -6 6291 5202 404 247 5 102 chr11 20123848 20124034 -130659519 + MIR SINE MIR 86 253 -9 365 286 106 70 chr11 20124189 20124234 -130659319 + MLT1H LTR MaLR 1 43 -506 327 96 0 0 chr11 20124234 20124286 -130659267 + (CA)n Simple_repeat Simple_repeat 2 53 0 365 286 106 70 chr11 20124286 20124702 -130658851 + MLT1H LTR MaLR 43 549 0 183 77 0 0 chr11 20125062 20125088 -130658465 - MIR SINE MIR -172 90 65 2185 195 32 36 chr11 20125104 20125606 -130657947 - MLT1D LTR MaLR 0 505 6 961 242 0 0 chr11 20126426 20126637 -130656916 + MIR SINE MIR 13 223 -39 239 316 128 8 chr11 20126755 20126872 -130656681 + MIR SINE MIR 16 146 -62 587 170 38 9 chr11 20126879 20126985 -130656568 - MLT1H1 LTR MaLR 0 555 447 539 329 112 8 chr11 20127023 20127272 -130656281 - MLT1H1 LTR MaLR -257 298 24 2485 135 17 6 chr11 20127354 20127383 -130656170 + L1MC/D LINE L1 5129 5156 -1177 4312 148 16 3 chr11 20127383 20128086 -130655467 - L1MC1 LINE L1 0 6333 5622 2485 135 17 6 chr11 20128086 20128552 -130655001 + L1MC1 LINE L1 5156 5625 -708 355 276 0 10 chr11 20128705 20128803 -130654750 + L3 LINE CR1 1390 1486 -91 596 242 42 33 chr11 20129050 20129265 -130654288 - MIR SINE MIR 0 262 46 482 227 120 13 chr11 20130704 20130854 -130652699 + MIR SINE MIR 81 246 -16 1025 203 0 0 chr11 20131072 20131249 -130652304 - MER45A DNA AcHobo 0 178 2 306 258 200 0 chr11 20131765 20131920 -130651633 + MIR SINE MIR 46 231 -31 811 227 114 14 chr11 20131999 20132219 -130651334 - MIR SINE MIR -12 250 9 289 298 11 99 chr11 20132680 20132871 -130650682 + L2 LINE L2 2886 3059 -213 200 200 243 14 chr11 20133000 20133070 -130650483 + L2 LINE L2 3227 3312 -1 207 241 13 89 chr11 20133398 20133477 -130650076 + MIR3 SINE MIR 112 184 -24 4129 164 12 3 chr11 20133621 20134358 -130649195 - L1 LINE L1 -1001 5145 4402 476 315 61 0 chr11 20134364 20134529 -130649024 + MIR SINE MIR 18 192 -70 2245 112 0 3 chr11 20134686 20134980 -130648573 + AluSx SINE Alu 1 293 -19 188 250 19 0 chr11 20135303 20135355 -130648198 + MIR3 SINE MIR 109 161 -47 313 303 42 8 chr11 20135378 20135497 -130648056 + MIR SINE MIR 19 141 -67 216 97 0 0 chr11 20135498 20135529 -130648024 + (GAA)n Simple_repeat Simple_repeat 2 32 0 186 103 0 0 chr11 20137060 20137089 -130646464 + (CA)n Simple_repeat Simple_repeat 1 29 0 333 0 0 0 chr11 20137123 20137160 -130646393 + (CA)n Simple_repeat Simple_repeat 2 38 0 292 375 0 8 chr11 20137870 20137990 -130645563 + MIR3 SINE MIR 37 155 -53 1923 143 39 0 chr11 20138185 20138465 -130645088 + AluJb SINE Alu 1 291 -21 306 164 0 0 chr11 20138503 20138558 -130644995 + A-rich Low_complexity Low_complexity 1 55 0 21 36 0 0 chr11 20138597 20138625 -130644928 + AT_rich Low_complexity Low_complexity 1 28 0 2506 56 0 0 chr11 20138689 20138992 -130644561 - L1PA3 LINE L1 -3 6152 5850 238 287 23 11 chr11 20139850 20139937 -130643616 + MIR SINE MIR 95 182 -80 445 212 188 6 chr11 20140408 20140573 -130642980 - MIR SINE MIR -9 253 59 565 244 93 26 chr11 20141401 20141594 -130641959 + MIR SINE MIR 46 251 -11 1578 95 0 0 chr11 20141859 20142070 -130641483 + L1PA14 LINE L1 5934 6144 -17 457 289 65 91 chr11 20142155 20142508 -130641045 - L2 LINE L2 0 3272 2929 370 196 54 0 chr11 20142529 20142621 -130640932 - MLT1J1 LTR MaLR 0 446 350 299 190 17 0 chr11 20142691 20142749 -130640804 - MLT1J2 LTR MaLR -384 66 8 443 375 20 4 chr11 20142752 20143000 -130640553 - L2 LINE L2 -458 2856 2605 1700 180 40 78 chr11 20143000 20143449 -130640104 - MSTB1 LTR MaLR 0 432 1 2324 43 71 0 chr11 20144070 20144350 -130639203 - AluY SINE Alu -11 300 1 2292 152 78 2 chr11 20145051 20145447 -130638106 - MSTB LTR MaLR 0 426 1 207 268 183 0 chr11 20145548 20145630 -130637923 - MIR SINE MIR -12 250 154 428 277 5 79 chr11 20146078 20146280 -130637273 - MIR SINE MIR 0 262 76 2072 109 0 0 chr11 20146328 20146604 -130636949 + AluSg SINE Alu 35 310 0 952 169 27 0 chr11 20146619 20146767 -130636786 + MER68 LTR ERV1 1 152 -410 524 333 153 18 chr11 20147134 20147579 -130635974 + L3 LINE CR1 1072 1576 -1 300 231 15 0 chr11 20148031 20148096 -130635457 - MLT1J1 LTR MaLR 0 446 381 * 419 250 130 39 chr11 20148095 20148303 -130635250 - MLT1J2 LTR MaLR -215 235 9 6644 150 36 23 chr11 20149105 20151234 -130632319 - L1MA7 LINE L1 0 6291 4140 1515 258 77 17 chr11 20151791 20152325 -130631228 - HsTC2 DNA Tc2 -2 1896 1331 320 284 113 21 chr11 20152349 20152490 -130631063 - MIR SINE MIR -50 212 59 1758 230 49 63 chr11 20152622 20153257 -130630296 - MER21B LTR ERV1 -48 815 98 474 206 0 22 chr11 20153310 20153402 -130630151 - MER21B LTR ERV1 -773 90 1 823 78 17 9 chr11 20153427 20153542 -130630011 + L1PA13 LINE L1 5972 6087 -76 364 214 95 0 chr11 20153542 20153626 -130629927 + MLT1D LTR MaLR 115 206 -299 396 36 91 0 chr11 20153631 20153686 -130629867 + L1PA13 LINE L1 6101 6160 -3 210 275 209 0 chr11 20154269 20154360 -130629193 - L2 LINE L2 -27 3245 3136 236 307 0 0 chr11 20154473 20154548 -130629005 - L2 LINE L2 -220 3052 2978 365 313 182 24 chr11 20155284 20155575 -130627978 - L2 LINE L2 -339 2975 2639 375 23 0 0 chr11 20155575 20155619 -130627934 + (CA)n Simple_repeat Simple_repeat 2 45 0 266 340 9 19 chr11 20156816 20156922 -130626631 + MIR SINE MIR 41 145 -63 518 244 66 70 chr11 20157834 20158047 -130625506 + MIR SINE MIR 36 247 -15 2109 98 0 44 chr11 20158060 20158386 -130625167 - AluSc SINE Alu 0 313 1 665 273 178 32 chr11 20158422 20158838 -130624715 + MLT1J1 LTR MaLR 1 446 0 216 45 23 45 chr11 20158858 20158902 -130624651 + (TTA)n Simple_repeat Simple_repeat 3 45 0 341 314 288 0 chr11 20158949 20159140 -130624413 + MIR SINE MIR 12 257 -5 201 154 0 0 chr11 20159168 20159207 -130624346 + (CAT)n Simple_repeat Simple_repeat 1 39 0 509 281 78 18 chr11 20159545 20159712 -130623841 - MIR SINE MIR -33 229 53 211 289 70 78 chr11 20159786 20159928 -130623625 + MIR3 SINE MIR 9 149 -59 550 223 27 47 chr11 20159947 20160095 -130623458 - MIR SINE MIR -26 236 92 216 0 0 0 chr11 20160798 20160822 -130622731 + (CCTG)n Simple_repeat Simple_repeat 3 26 0 494 298 93 5 chr11 20161532 20161737 -130621816 + MIR SINE MIR 16 238 -24 284 274 0 0 chr11 20162196 20162258 -130621295 - L2 LINE L2 -95 3177 3116 626 264 60 6 chr11 20162764 20162931 -130620622 + MIR SINE MIR 75 250 -12 769 74 0 0 chr11 20163462 20163557 -130619996 + Alu SINE Alu 202 296 -15 323 264 36 18 chr11 20163815 20163925 -130619628 + L2 LINE L2 3115 3226 -46 396 289 100 100 chr11 20165596 20166120 -130617433 - L2 LINE L2 -1 3271 2740 396 0 0 0 chr11 20166253 20166297 -130617256 + (TG)n Simple_repeat Simple_repeat 2 45 0 229 360 104 0 chr11 20166414 20166539 -130617014 - L2 LINE L2 -14 3299 3162 2018 134 67 3 chr11 20166662 20167004 -130616549 - MER47A DNA MER2_type -2 364 1 754 181 138 78 chr11 20167025 20167257 -130616296 - MIR SINE MIR 0 262 17 312 273 11 23 chr11 20167322 20167410 -130616143 + L2 LINE L2 3209 3295 -18 197 244 0 0 chr11 20168654 20168695 -130614858 + L2 LINE L2 3191 3231 -82 645 294 116 45 chr11 20168700 20169062 -130614491 - L2 LINE L2 -1 3271 2837 886 175 73 6 chr11 20169062 20169239 -130614314 + MER5A DNA MER1_type 1 189 0 645 294 116 45 chr11 20169239 20169475 -130614078 - L2 LINE L2 -435 2837 2619 314 280 40 0 chr11 20169471 20169546 -130614007 + L2 LINE L2 3191 3268 -4 * 288 153 51 17 chr11 20169679 20169738 -130613815 + L2 LINE L2 3210 3270 -2 394 198 164 9 chr11 20169749 20169865 -130613688 - MIR SINE MIR -83 179 46 247 234 78 31 chr11 20170533 20170597 -130612956 - MIR SINE MIR -86 176 110 349 264 78 71 chr11 20170763 20170918 -130612635 - MIR SINE MIR -35 173 16 468 316 15 8 chr11 20171180 20171313 -130612240 - L2 LINE L2 -1 3312 3179 234 81 0 0 chr11 20171440 20171477 -130612076 + (TG)n Simple_repeat Simple_repeat 1 37 0 527 212 9 0 chr11 20172403 20172516 -130611037 - MIR SINE MIR -43 219 106 296 303 141 30 chr11 20172633 20172831 -130610722 - MIR SINE MIR -17 245 26 288 323 48 36 chr11 20173180 20173347 -130610206 - MIR SINE MIR -74 188 20 905 173 10 58 chr11 20173517 20173725 -130609828 + L1MB8 LINE L1 5921 6118 -60 186 265 61 0 chr11 20175689 20175738 -130607815 - L2 LINE L2 -63 3209 3158 1888 181 95 14 chr11 20175811 20176241 -130607312 + MLT1C LTR MaLR 1 465 -2 593 291 57 49 chr11 20177154 20177409 -130606144 + MIR SINE MIR 1 233 -29 261 237 33 6 chr11 20177437 20177512 -130606041 + MIR SINE MIR 92 151 -57 1680 236 22 5 chr11 20177910 20178354 -130605199 - L2 LINE L2 -688 2626 2175 792 178 0 0 chr11 20179107 20179236 -130604317 + FLAM_C SINE Alu 3 131 -2 233 362 65 7 chr11 20179527 20179665 -130603888 + MIR SINE MIR 89 234 -28 216 111 0 0 chr11 20180361 20180397 -130603156 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 1777 193 11 22 chr11 20180946 20181303 -130602250 + MLT1A1 LTR MaLR 1 353 -12 203 238 0 0 chr11 20181306 20181348 -130602205 + (CAA)n Simple_repeat Simple_repeat 2 43 0 207 208 21 42 chr11 20181452 20181500 -130602053 - L2 LINE L2 -65 3207 3161 720 293 50 0 chr11 20181515 20181713 -130601840 - MIR SINE MIR -22 240 33 218 263 58 89 chr11 20182578 20182768 -130600785 + L2 LINE L2 2774 2957 -357 378 236 124 79 chr11 20183803 20184044 -130599509 - MIR SINE MIR 0 262 11 335 329 82 12 chr11 20184120 20184290 -130599263 + MIR SINE MIR 13 194 -68 241 331 53 46 chr11 20185151 20185302 -130598251 - MIR SINE MIR -18 244 93 352 231 168 17 chr11 20185495 20185626 -130597927 + MIR SINE MIR 4 150 -58 655 313 99 45 chr11 20185970 20186395 -130597158 + L2 LINE L2 2825 3272 0 570 240 74 6 chr11 20187313 20187491 -130596062 - MIR3 SINE MIR -3 205 8 2254 127 36 30 chr11 20189248 20189610 -130593943 + THE1B LTR MaLR 1 364 0 315 0 0 0 chr11 20190116 20190151 -130593402 + (CA)n Simple_repeat Simple_repeat 2 36 0 2375 110 0 0 chr11 20190828 20191128 -130592425 + AluSc SINE Alu 1 300 -9 267 321 20 73 chr11 20191597 20191843 -130591710 + L2 LINE L2 3023 3255 -58 486 311 31 42 chr11 20192580 20192771 -130590782 - MIR SINE MIR -44 218 34 591 259 100 27 chr11 20192910 20193130 -130590423 - MIR SINE MIR -21 241 6 475 304 25 39 chr11 20193312 20193516 -130590037 - L2 LINE L2 -48 3265 3065 * 1639 258 67 31 chr11 20193509 20193949 -130589604 - L2 LINE L2 -607 2707 2243 478 216 182 7 chr11 20193949 20194097 -130589456 - MER104 DNA MER2_type -2 178 5 1639 258 67 31 chr11 20194097 20194195 -130589358 - L2 LINE L2 -1071 2243 2150 343 78 0 0 chr11 20194199 20194250 -130589303 - MADE1 DNA Mariner 0 80 30 356 275 0 0 chr11 20194596 20194676 -130588877 + MIR3 SINE MIR 111 190 -18 288 288 159 12 chr11 20194711 20194874 -130588679 - MIR SINE MIR -48 214 28 961 201 10 20 chr11 20195374 20195573 -130587980 - MER20 DNA MER1_type 0 219 23 210 207 17 17 chr11 20195817 20195875 -130587678 + CT-rich Low_complexity Low_complexity 2 59 0 2863 0 0 0 chr11 20195885 20196184 -130587369 - AluYa5 SINE Alu -12 299 1 356 243 18 118 chr11 20196399 20196568 -130586985 + L2 LINE L2 3159 3310 -3 253 248 133 44 chr11 20196560 20196673 -130586880 - L2 LINE L2 -16 3297 3175 * 618 297 110 17 chr11 20196989 20197225 -130586328 + MIR SINE MIR 2 259 -3 235 246 0 16 chr11 20198189 20198250 -130585303 - MIR SINE MIR -82 126 67 433 365 20 29 chr11 20198263 20198507 -130585046 - MIR SINE MIR -13 249 8 450 219 199 27 chr11 20198599 20198745 -130584808 + MER5A DNA MER1_type 16 186 -3 234 263 111 24 chr11 20198771 20198880 -130584673 - MIR SINE MIR -69 193 66 23 33 0 0 chr11 20199376 20199406 -130584147 + AT_rich Low_complexity Low_complexity 1 30 0 646 233 144 19 chr11 20199465 20199685 -130583868 - MIR SINE MIR 0 262 13 887 221 150 9 chr11 20200701 20200927 -130582626 - MIR SINE MIR -1 261 4 231 208 57 0 chr11 20201066 20201119 -130582434 + MIR SINE MIR 50 105 -103 713 286 117 38 chr11 20201308 20201703 -130581850 - MLT1K LTR MaLR -10 578 153 285 345 28 14 chr11 20201975 20202120 -130581433 - L2 LINE L2 -520 2794 2648 698 282 94 4 chr11 20202136 20202370 -130581183 + MIR SINE MIR 2 256 -6 423 250 56 0 chr11 20202465 20202573 -130580980 + MIR SINE MIR 28 141 -121 186 313 0 60 chr11 20202599 20202666 -130580887 + MIR SINE MIR 198 260 -2 2212 34 42 0 chr11 20202722 20202987 -130580566 + L1PA5 LINE L1 5875 6150 -4 636 209 44 95 chr11 20203820 20204041 -130579512 - MER112 DNA MER1_type -1 259 53 1853 112 0 12 chr11 20204041 20204299 -130579254 - AluSq SINE Alu -58 255 1 636 209 44 95 chr11 20204299 20204350 -130579203 - MER112 DNA MER1_type -207 53 1 930 222 16 0 chr11 20204359 20204544 -130579009 - MER5A DNA MER1_type -1 188 1 349 277 30 20 chr11 20204549 20204650 -130578903 - MIR SINE MIR -112 150 49 221 321 68 53 chr11 20204776 20204966 -130578587 - MIR3 SINE MIR -1 207 15 243 336 100 44 chr11 20205204 20205433 -130578120 + MIR SINE MIR 20 261 -1 331 233 204 0 chr11 20205437 20205540 -130578013 - L2 LINE L2 -1 3312 3189 367 336 8 8 chr11 20205569 20205697 -130577856 - MER117 DNA MER1_type -42 155 28 476 273 9 0 chr11 20206690 20206807 -130576746 + MIR3 SINE MIR 82 199 -9 30 45 0 0 chr11 20207629 20207673 -130575880 + AT_rich Low_complexity Low_complexity 1 44 0 353 228 25 0 chr11 20207903 20207982 -130575571 - MIR SINE MIR -64 198 118 22 0 0 0 chr11 20208312 20208334 -130575219 + AT_rich Low_complexity Low_complexity 1 22 0 211 219 16 16 chr11 20209111 20209175 -130574378 + CT-rich Low_complexity Low_complexity 2 65 0 315 0 0 0 chr11 20209175 20209210 -130574343 + (CA)n Simple_repeat Simple_repeat 2 36 0 * 339 44 0 0 chr11 20209209 20209254 -130574299 + (GA)n Simple_repeat Simple_repeat 2 46 0 399 285 42 18 chr11 20209450 20209615 -130573938 - L1ME LINE L1 -319 5802 5634 445 260 126 39 chr11 20210288 20210443 -130573110 + MIR SINE MIR 12 195 -67 1852 188 93 36 chr11 20210443 20210885 -130572668 - MLT1C LTR MaLR 0 467 1 445 260 126 39 chr11 20210885 20210960 -130572593 + MIR SINE MIR 195 262 0 211 224 69 0 chr11 20211004 20211062 -130572491 - MIR SINE MIR -96 166 105 276 204 28 197 chr11 20211139 20211281 -130572272 + MIR SINE MIR 133 250 -12 375 236 16 49 chr11 20212452 20212541 -130571012 - LTR33 LTR ERVL -8 513 428 1687 195 103 0 chr11 20212541 20212900 -130570653 - MSTD LTR MaLR 0 396 1 375 236 16 49 chr11 20212900 20212933 -130570620 - LTR33 LTR ERVL -93 428 395 546 238 166 6 chr11 20213036 20213217 -130570336 - LTR33 LTR ERVL -310 211 2 394 302 94 13 chr11 20213435 20213594 -130569959 + MIR SINE MIR 89 260 -2 367 303 61 61 chr11 20213609 20213807 -130569746 - MIR SINE MIR -3 259 62 369 308 56 0 chr11 20214236 20214379 -130569174 + MIR3 SINE MIR 48 198 -10 891 282 53 8 chr11 20214422 20214667 -130568886 + MIR SINE MIR 5 260 -2 318 237 207 7 chr11 20214747 20214882 -130568671 + MIR SINE MIR 92 253 -9 23 0 0 0 chr11 20215571 20215594 -130567959 + AT_rich Low_complexity Low_complexity 1 23 0 424 281 62 0 chr11 20215733 20215861 -130567692 - MLT1J LTR MaLR -286 225 90 605 289 62 80 chr11 20215892 20216228 -130567325 + LTR16A LTR ERVL 16 345 -105 329 314 202 16 chr11 20216366 20216614 -130566939 + L1MC4a LINE L1 5611 5904 -1904 325 312 123 7 chr11 20217016 20217170 -130566383 + MIR SINE MIR 84 255 -7 356 293 83 74 chr11 20217974 20218173 -130565380 + Charlie8 DNA MER1_type 100 303 -2114 2281 79 0 3 chr11 20218173 20218465 -130565088 - AluSc SINE Alu -18 291 1 356 293 83 74 chr11 20218465 20218494 -130565059 + Charlie8 DNA MER1_type 303 330 -2087 328 221 44 0 chr11 20219724 20219792 -130563761 + MIR SINE MIR 81 151 -111 407 283 19 44 chr11 20219903 20220062 -130563491 - MIR SINE MIR -55 207 53 432 259 154 65 chr11 20221608 20221809 -130561744 - MIR SINE MIR -10 252 34 763 201 15 0 chr11 20222178 20222312 -130561241 + MER58B DNA MER1_type 191 326 -15 503 218 97 0 chr11 20222335 20222459 -130561094 + MER103 DNA DNA 24 159 -7 244 255 99 43 chr11 20222508 20222649 -130560904 - MIR3 SINE MIR -58 150 2 862 289 4 13 chr11 20223647 20223879 -130559674 + MIR SINE MIR 13 242 -20 492 247 20 53 chr11 20224279 20224429 -130559124 - MIR SINE MIR -4 258 114 279 248 8 101 chr11 20225219 20225348 -130558205 - MIR SINE MIR 0 262 146 3664 177 69 11 chr11 20225360 20226028 -130557525 + MER44D DNA MER2_type 27 605 0 263 295 149 5 chr11 20226028 20226143 -130557410 - MIR SINE MIR -63 145 17 300 27 0 0 chr11 20226315 20226352 -130557201 + (CA)n Simple_repeat Simple_repeat 1 37 0 379 310 31 16 chr11 20226474 20226603 -130556950 - L3 LINE CR1 -78 1499 1369 199 246 72 130 chr11 20227368 20227506 -130556047 + MIR SINE MIR 65 195 -13 181 341 119 0 chr11 20228512 20228563 -130554990 + L2 LINE L2 2916 2960 -312 2599 96 19 26 chr11 20228563 20228940 -130554613 + THE1C LTR MaLR 1 374 -1 181 341 119 0 chr11 20228940 20229014 -130554539 + L2 LINE L2 2960 3056 -216 231 211 224 0 chr11 20229257 20229333 -130554220 + MIR3 SINE MIR 91 183 -25 972 206 76 160 chr11 20229565 20230173 -130553380 + MLT1E LTR MaLR 27 567 0 283 283 75 47 chr11 20230286 20230392 -130553161 + MIR3 SINE MIR 68 176 -32 392 304 131 11 chr11 20230699 20230890 -130552663 + MIR SINE MIR 33 246 -16 255 250 33 0 chr11 20231004 20231064 -130552489 - MIR SINE MIR -12 250 189 12647 168 102 17 chr11 20231622 20233848 -130549705 - Tigger1 DNA MER2_type 0 2418 3 619 303 68 8 chr11 20233897 20234131 -130549422 + MLT1J LTR MaLR 180 427 -84 258 293 68 20 chr11 20234244 20234391 -130549162 + L1ME LINE L1 5635 5788 -333 468 317 34 29 chr11 20234424 20234632 -130548921 + MIR SINE MIR 33 241 -21 211 291 13 25 chr11 20234648 20234727 -130548826 + CT-rich Low_complexity Low_complexity 1 78 0 294 259 217 7 chr11 20235955 20236098 -130547455 - MIR SINE MIR -72 190 18 250 316 63 11 chr11 20236105 20236200 -130547353 + MER5B DNA MER1_type 6 105 -73 255 297 108 80 chr11 20236734 20236983 -130546570 - L2 LINE L2 -1 3271 3016 357 275 237 0 chr11 20237083 20237214 -130546339 - L2 LINE L2 0 3313 3152 24 77 0 0 chr11 20237235 20237287 -130546266 + AT_rich Low_complexity Low_complexity 1 52 0 2784 188 34 9 chr11 20237718 20238244 -130545309 - MLT1F LTR MaLR -3 539 1 213 43 0 65 chr11 20238321 20238367 -130545186 + (CAAAAA)n Simple_repeat Simple_repeat 2 44 0 380 282 86 4 chr11 20238436 20238567 -130544986 + MIR SINE MIR 44 188 -60 862 250 10 0 chr11 20238614 20238810 -130544743 + MIR SINE MIR 50 247 -15 745 285 54 0 chr11 20239412 20239633 -130543920 - MIR SINE MIR -21 241 9 235 311 0 0 chr11 20239754 20239815 -130543738 + MIR SINE MIR 93 153 -55 262 312 173 25 chr11 20239829 20240031 -130543522 + MIR SINE MIR 21 252 -10 212 315 0 0 chr11 20240155 20240209 -130543344 + (TCCA)n Simple_repeat Simple_repeat 1 54 0 253 256 44 44 chr11 20241002 20241092 -130542461 - MIR SINE MIR -87 121 32 191 172 115 126 chr11 20241187 20241274 -130542279 - L3 LINE CR1 -896 681 596 1587 168 0 41 chr11 20241379 20241695 -130541858 - AluJo SINE Alu -7 305 3 419 279 41 34 chr11 20241762 20241775 -130541778 + L2 LINE L2 3156 3167 -146 1018 107 0 19 chr11 20241775 20241934 -130541619 - L1MD1 LINE L1 0 6242 6087 419 279 41 34 chr11 20241934 20242067 -130541486 + L2 LINE L2 3167 3303 -10 700 216 202 5 chr11 20242229 20242437 -130541116 + Charlie2a DNA MER1_type 1 249 -2613 477 238 7 26 chr11 20242438 20242589 -130540964 + Charlie2a DNA MER1_type 869 1016 -1846 350 170 38 57 chr11 20242598 20242704 -130540849 + Charlie2a DNA MER1_type 2759 2862 0 357 276 138 51 chr11 20243405 20243601 -130539952 - MIR SINE MIR 0 262 50 664 256 23 12 chr11 20243791 20243963 -130539590 + AluJb SINE Alu 135 308 -4 309 159 0 0 chr11 20243965 20244028 -130539525 + GA-rich Low_complexity Low_complexity 3 65 0 310 200 46 0 chr11 20244034 20244099 -130539454 - MER103 DNA DNA -87 79 12 406 386 33 0 chr11 20245062 20245272 -130538281 - L3 LINE CR1 -3 1574 1358 * 892 272 27 27 chr11 20245270 20245531 -130538022 - MIR SINE MIR 0 262 2 515 293 113 13 chr11 20245539 20245768 -130537785 - MIR SINE MIR 0 262 11 230 222 103 68 chr11 20245790 20245907 -130537646 - MIR SINE MIR -121 141 21 501 280 21 14 chr11 20246173 20246316 -130537237 + MIR SINE MIR 32 175 -87 384 308 123 20 chr11 20246586 20246781 -130536772 + MIR SINE MIR 2 216 -46 276 156 0 0 chr11 20247122 20247167 -130536386 + MIR SINE MIR 210 254 -8 331 270 38 106 chr11 20247796 20248033 -130535520 + MIR SINE MIR 22 242 -20 1423 77 116 5 chr11 20248714 20248921 -130534632 - MER30 DNA MER1_type 0 230 1 182 208 21 0 chr11 20250792 20250840 -130532713 + (TAA)n Simple_repeat Simple_repeat 3 51 0 354 324 13 1 chr11 20251010 20251133 -130532420 - MIR SINE MIR -68 140 15 501 283 100 35 chr11 20251363 20251593 -130531960 - MIR SINE MIR -10 252 8 2227 71 3 32 chr11 20251630 20251940 -130531613 + AluY SINE Alu 1 301 -10 483 346 24 19 chr11 20253389 20253600 -130529953 - MIR SINE MIR -11 251 40 2576 175 12 24 chr11 20253750 20254242 -130529311 + MER66B LTR ERV1 1 486 0 214 278 83 19 chr11 20254410 20254518 -130529035 - MIR SINE MIR -68 140 26 257 103 10 82 chr11 20254892 20254989 -130528564 + (TCTCC)n Simple_repeat Simple_repeat 2 91 0 472 361 26 9 chr11 20257168 20257398 -130526155 - MIR SINE MIR -6 256 23 242 259 46 76 chr11 20257583 20257714 -130525839 + MIR3 SINE MIR 46 172 -36 1813 34 102 0 chr11 20257762 20257997 -130525556 + AluSp SINE Alu 35 293 -20 21 0 0 0 chr11 20258003 20258024 -130525529 + AT_rich Low_complexity Low_complexity 1 21 0 756 274 156 2 chr11 20258143 20258514 -130525039 - LTR16A LTR ERVL 0 491 16 332 307 136 14 chr11 20258854 20258883 -130524670 - MER91A DNA MER1_type -39 157 133 279 0 0 0 chr11 20258883 20258914 -130524639 + (CCCCAG)n Simple_repeat Simple_repeat 2 32 0 332 307 136 14 chr11 20258914 20259024 -130524529 - MER91A DNA MER1_type -63 133 1 508 275 133 17 chr11 20259155 20259395 -130524158 + L1ME4a LINE L1 5598 5865 -256 1634 229 60 4 chr11 20259516 20259970 -130523583 - Charlie4a DNA MER1_type 0 508 30 503 342 30 15 chr11 20260187 20260386 -130523167 - MIR SINE MIR -49 213 12 353 259 121 20 chr11 20261073 20261230 -130522323 + MIR SINE MIR 2 212 -50 471 203 187 0 chr11 20261230 20261353 -130522200 - MLT1H LTR MaLR -2 593 448 2319 167 16 98 chr11 20261468 20261970 -130521583 - LTR32 LTR ERVL -2 469 9 753 234 98 17 chr11 20261963 20262198 -130521355 - MLT1H LTR MaLR -295 254 1 * 211 250 0 0 chr11 20262199 20262243 -130521310 + MIR SINE MIR 207 250 -12 319 268 36 43 chr11 20262252 20262385 -130521168 - MIR SINE MIR -68 140 11 312 336 16 25 chr11 20262389 20262511 -130521042 + MIR SINE MIR 79 199 -63 596 286 60 0 chr11 20263403 20263571 -130519982 + MIR SINE MIR 29 206 -56 574 182 38 50 chr11 20263911 20264070 -130519483 + MER103 DNA DNA 2 158 -8 266 196 0 0 chr11 20264821 20264872 -130518681 - MIR SINE MIR -140 122 72 188 316 108 38 chr11 20266199 20266357 -130517196 - MIR3 SINE MIR -39 169 1 353 305 115 40 chr11 20266580 20266754 -130516799 + MER5A DNA MER1_type 1 187 -2 756 244 104 5 chr11 20266769 20266970 -130516583 + MIR SINE MIR 32 252 -10 27 49 0 0 chr11 20266993 20267034 -130516519 + AT_rich Low_complexity Low_complexity 1 41 0 308 286 0 0 chr11 20267803 20267880 -130515673 - MIR SINE MIR -65 143 67 1891 118 7 4 chr11 20267896 20268176 -130515377 + AluSx SINE Alu 1 281 -31 1739 145 0 30 chr11 20269075 20269421 -130514132 - AluJb SINE Alu 0 337 1 224 282 68 39 chr11 20269774 20269877 -130513676 - MIR SINE MIR -72 190 85 494 270 0 0 chr11 20270528 20270639 -130512914 - MIR SINE MIR -147 115 5 524 254 71 119 chr11 20270717 20271138 -130512415 + L2 LINE L2 2871 3271 -1 359 252 97 58 chr11 20271612 20271818 -130511735 - MIR SINE MIR -20 242 29 22 0 0 0 chr11 20272152 20272174 -130511379 + AT_rich Low_complexity Low_complexity 1 22 0 559 240 13 45 chr11 20272382 20272536 -130511017 + L2 LINE L2 3165 3313 0 247 164 82 66 chr11 20272658 20272719 -130510834 + L2 LINE L2 3200 3261 -11 333 339 37 2 chr11 20273193 20273368 -130510185 + MIR SINE MIR 7 184 -78 4944 163 30 22 chr11 20273368 20274472 -130509081 + L1MB5 LINE L1 5009 6136 -38 2039 109 17 0 chr11 20274472 20274774 -130508779 + AluSq SINE Alu 1 307 -6 4944 163 30 22 chr11 20274774 20274814 -130508739 + L1MB5 LINE L1 6136 6174 0 272 287 53 21 chr11 20275312 20275406 -130508147 - MIR3 SINE MIR -17 191 95 712 273 10 12 chr11 20275676 20275887 -130507666 + MIR SINE MIR 10 261 -1 994 253 70 55 chr11 20276122 20276521 -130507032 + L2 LINE L2 2909 3313 0 303 288 242 26 chr11 20276586 20276739 -130506814 - MIR SINE MIR -14 248 63 448 302 141 19 chr11 20277132 20277345 -130506208 + MIR SINE MIR 30 262 0 204 86 14 93 chr11 20277364 20277446 -130506107 + MIR SINE MIR 128 256 -6 559 301 102 34 chr11 20277669 20278021 -130505532 - L2 LINE L2 -17 3296 2921 272 327 43 83 chr11 20278598 20278876 -130504677 + L2 LINE L2 2997 3263 -9 * 306 218 51 13 chr11 20278849 20278927 -130504626 - L2 LINE L2 -2 3311 3231 406 269 109 8 chr11 20279048 20279167 -130504386 - MIR3 SINE MIR -70 138 8 518 158 219 0 chr11 20279449 20279563 -130503990 - L1ME4a LINE L1 0 6121 5983 218 325 183 16 chr11 20279776 20279902 -130503651 + L2 LINE L2 3123 3269 -3 231 276 55 39 chr11 20280011 20280138 -130503415 + L2 LINE L2 3183 3311 -2 436 250 101 27 chr11 20280150 20280298 -130503255 - MIR SINE MIR -41 221 63 554 242 23 8 chr11 20281786 20281914 -130501639 + MER58B DNA MER1_type 212 341 0 197 132 0 151 chr11 20281952 20282005 -130501548 - MIR SINE MIR -149 113 69 626 267 41 12 chr11 20282207 20282379 -130501174 + MIR SINE MIR 66 242 -20 605 314 9 65 chr11 20282556 20282785 -130500768 + MIR SINE MIR 47 262 0 1326 126 372 0 chr11 20283387 20283664 -130499889 - MSTC LTR MaLR -48 380 1 249 244 0 0 chr11 20283665 20283710 -130499843 - MIR SINE MIR -8 254 210 645 259 46 23 chr11 20283710 20283926 -130499627 - L1ME LINE L1 -384 5778 5558 256 288 147 5 chr11 20284035 20284226 -130499327 - L1ME LINE L1 -913 5233 5016 * 44065 46 2 2 chr11 20284222 20290370 -130493183 - L1PA4 LINE L1 -2 6153 7 354 301 25 37 chr11 20290602 20290765 -130492788 - MLT1J1 LTR MaLR 0 446 286 355 260 90 0 chr11 20290829 20290929 -130492624 + L2 LINE L2 3205 3313 0 22 0 0 0 chr11 20291138 20291160 -130492393 + AT_rich Low_complexity Low_complexity 1 22 0 317 189 0 0 chr11 20291313 20291366 -130492187 + MER117 DNA MER1_type 109 161 -36 225 151 0 0 chr11 20292071 20292124 -130491429 + (CAAA)n Simple_repeat Simple_repeat 4 56 0 220 256 141 70 chr11 20292264 20292420 -130491133 - L2 LINE L2 -180 3092 2926 287 297 11 0 chr11 20292756 20292845 -130490708 + MIR SINE MIR 41 130 -78 976 268 17 0 chr11 20292845 20293084 -130490469 + MIR SINE MIR 2 244 -18 222 320 103 0 chr11 20294377 20294474 -130489079 - L2 LINE L2 -25 3247 3141 1251 187 16 0 chr11 20294856 20295135 -130488418 - L1MC/D LINE L1 -731 5511 5229 502 185 11 0 chr11 20295137 20295229 -130488324 - MIR SINE MIR -65 197 105 292 290 74 34 chr11 20295686 20295848 -130487705 + MIR SINE MIR 22 189 -61 721 281 25 5 chr11 20295855 20296051 -130487502 + MIR SINE MIR 13 212 -50 783 266 180 37 chr11 20296152 20296558 -130486995 - LTR16C LTR ERVL -27 464 1 716 212 20 7 chr11 20296562 20296713 -130486840 - MIR SINE MIR -47 215 63 1635 154 22 45 chr11 20296717 20297029 -130486524 - AluJb SINE Alu -7 305 1 876 246 12 23 chr11 20297041 20297297 -130486256 + MER112 DNA MER1_type 7 259 -1 316 229 46 37 chr11 20297857 20297966 -130485587 - MIR SINE MIR -84 178 69 590 297 84 5 chr11 20298052 20298254 -130485299 + MIR SINE MIR 32 249 -13 869 239 51 47 chr11 20299500 20299755 -130483798 - MIR SINE MIR -1 261 6 1422 229 45 6 chr11 20300930 20301262 -130482291 - LTR16C LTR ERVL 0 491 147 1166 254 15 8 chr11 20301525 20301785 -130481768 + MIR SINE MIR 1 262 0 386 294 87 8 chr11 20301785 20301911 -130481642 - MIR SINE MIR -121 141 6 311 181 28 28 chr11 20303007 20303079 -130480474 - MLT1K LTR MaLR -327 261 190 2195 113 0 0 chr11 20303158 20303460 -130480093 - AluSg SINE Alu -8 302 1 409 295 94 41 chr11 20303471 20303487 -130480066 - L2 LINE L2 -257 3015 3001 1273 221 103 36 chr11 20303487 20303925 -130479628 - MLT1C LTR MaLR 0 467 1 409 295 94 41 chr11 20303925 20304274 -130479279 - L2 LINE L2 -271 3001 2629 2161 262 46 33 chr11 20304274 20304330 -130479223 - L2 LINE L2 -25 3288 3234 2061 120 0 16 chr11 20304330 20304646 -130478907 + AluY SINE Alu 1 311 0 2161 262 46 33 chr11 20304646 20305546 -130478007 - L2 LINE L2 -79 3234 2319 831 277 29 25 chr11 20305549 20305687 -130477866 - MIR SINE MIR -18 244 103 2235 120 45 25 chr11 20305687 20306044 -130477509 + THE1B LTR MaLR 1 364 0 831 277 29 25 chr11 20306044 20306147 -130477406 - MIR SINE MIR -159 103 2 28 0 0 0 chr11 20306508 20306536 -130477017 + AT_rich Low_complexity Low_complexity 1 28 0 469 304 50 8 chr11 20307239 20307438 -130476115 - MIR SINE MIR -16 246 42 506 232 196 0 chr11 20307830 20307968 -130475585 + MER5A DNA MER1_type 25 189 0 211 269 151 8 chr11 20308920 20309039 -130474514 - MIR SINE MIR -3 259 124 2101 174 102 9 chr11 20309706 20310166 -130473387 - MLT1D LTR MaLR -2 503 1 194 281 31 21 chr11 20310434 20310530 -130473023 - L2 LINE L2 -263 3009 2913 290 271 21 21 chr11 20310901 20310997 -130472556 - MIR SINE MIR -48 214 119 920 150 0 11 chr11 20311667 20311847 -130471706 + (TGGA)n Simple_repeat Simple_repeat 1 178 0 2894 62 6 0 chr11 20312078 20312431 -130471122 - THE1A LTR MaLR 0 355 1 11992 87 10 1 chr11 20312431 20313998 -130469555 - THE1A-int LTR MaLR 0 1580 1 2587 91 3 19 chr11 20313998 20314359 -130469194 - THE1A LTR MaLR 0 355 1 732 221 113 5 chr11 20314808 20315003 -130468550 + MIR SINE MIR 36 251 -11 206 258 30 15 chr11 20315067 20315133 -130468420 - L2 LINE L2 0 3313 3247 189 107 0 0 chr11 20315500 20315528 -130468025 + (TC)n Simple_repeat Simple_repeat 2 29 0 578 200 26 0 chr11 20315534 20315649 -130467904 - L1MC1 LINE L1 -6 6327 6210 413 191 110 44 chr11 20316772 20316908 -130466645 + MER103 DNA DNA 8 152 -14 321 185 33 87 chr11 20316920 20317012 -130466541 - L1MCa LINE L1 -4363 2063 1977 223 360 0 30 chr11 20317515 20317615 -130465938 + L3 LINE CR1 1306 1402 -175 1048 319 100 36 chr11 20317791 20318577 -130464976 + L2 LINE L2 2469 3313 0 295 306 144 58 chr11 20318837 20319010 -130464543 + L3b LINE CR1 1378 1565 -18 6385 28 1 5 chr11 20319686 20320433 -130463120 - L1PA4 LINE L1 0 6155 5412 220 216 0 20 chr11 20320555 20320606 -130462947 + (TG)n Simple_repeat Simple_repeat 1 50 0 253 315 25 68 chr11 20321435 20321516 -130462037 + MER117 DNA MER1_type 42 114 -83 2450 188 26 18 chr11 20321516 20322015 -130461538 - MLT1D LTR MaLR -1 504 2 253 315 25 68 chr11 20322015 20322095 -130461458 + MER117 DNA MER1_type 114 196 -1 228 271 29 0 chr11 20322168 20322238 -130461315 - MIR SINE MIR -6 256 185 199 241 323 0 chr11 20322285 20322418 -130461135 + L2 LINE L2 2970 3145 -168 2070 101 30 0 chr11 20323266 20323563 -130459990 - AluSq SINE Alu -7 306 1 738 272 27 5 chr11 20323688 20323872 -130459681 + MIR SINE MIR 70 257 -5 589 254 21 7 chr11 20324068 20324210 -130459343 - MIR3 SINE MIR -32 176 33 487 236 155 0 chr11 20324312 20324473 -130459080 - MER5A DNA MER1_type 0 189 4 1446 180 3 10 chr11 20324483 20324783 -130458770 - MER33 DNA MER1_type 0 324 27 839 116 0 0 chr11 20324857 20324986 -130458567 - AluY SINE Alu 0 311 183 510 228 97 0 chr11 20326003 20326117 -130457436 - L2 LINE L2 0 3313 3189 255 260 39 0 chr11 20327210 20327287 -130456266 - MER116 DNA Mariner 0 80 1 288 286 110 0 chr11 20327292 20327383 -130456170 - MIR SINE MIR -3 259 159 807 249 112 13 chr11 20327383 20327616 -130455937 - LTR16A1 LTR ERVL 0 457 202 312 277 99 10 chr11 20327803 20327904 -130455649 - MIR SINE MIR -97 165 56 500 280 101 6 chr11 20328532 20328700 -130454853 + MIR SINE MIR 3 186 -76 1936 114 0 0 chr11 20328923 20329186 -130454367 + AluSx SINE Alu 1 263 -49 279 0 0 0 chr11 20329189 20329220 -130454333 + (TAAAA)n Simple_repeat Simple_repeat 4 34 0 22 0 0 0 chr11 20329468 20329490 -130454063 + AT_rich Low_complexity Low_complexity 1 22 0 227 321 38 76 chr11 20330000 20330125 -130453428 - L2 LINE L2 0 3272 3153 312 140 0 35 chr11 20330125 20330182 -130453371 + MER5B DNA MER1_type 1 55 -123 360 260 0 0 chr11 20330205 20330282 -130453271 - MIR SINE MIR -74 188 112 557 201 87 47 chr11 20330399 20330548 -130453005 - MIR SINE MIR -76 186 32 749 262 33 10 chr11 20331265 20331513 -130452040 - MIR SINE MIR 0 262 8 338 395 40 0 chr11 20332077 20332254 -130451299 - MIR SINE MIR -78 184 1 284 318 130 32 chr11 20332435 20332589 -130450964 - MIR SINE MIR -2 260 92 1907 177 59 35 chr11 20332638 20333062 -130450491 - MER63B DNA MER1_type -2 434 1 627 263 170 19 chr11 20333405 20333823 -130449730 - L1ME4a LINE L1 -35 6086 5606 2784 214 41 36 chr11 20333948 20333969 -130449584 + L1ME2 LINE L1 5263 5282 -896 1860 193 25 3 chr11 20333969 20334322 -130449231 - MLT1A1 LTR MaLR 0 365 5 2784 214 41 36 chr11 20334322 20334651 -130448902 + L1ME2 LINE L1 5282 5608 -570 1760 176 54 77 chr11 20334651 20335129 -130448424 + MLT1C LTR MaLR 1 467 0 2784 214 41 36 chr11 20335129 20335633 -130447920 + L1ME2 LINE L1 5608 6170 -8 429 316 44 0 chr11 20336180 20336316 -130447237 + MIR SINE MIR 109 250 -12 527 275 88 5 chr11 20337361 20337554 -130445999 - L1MC4a LINE L1 -1877 5931 5723 413 303 158 23 chr11 20337988 20338209 -130445344 - MIR SINE MIR -6 256 6 720 318 50 4 chr11 20338239 20338478 -130445075 - MIR SINE MIR 0 262 13 10105 35 1 4 chr11 20338532 20340503 -130443050 + L1PA4 LINE L1 4187 6155 0 1232 261 106 109 chr11 20340944 20341849 -130441704 - L2 LINE L2 -345 2969 2068 266 266 0 32 chr11 20342584 20342678 -130440875 - MIR SINE MIR 0 262 172 1038 231 14 5 chr11 20342690 20342906 -130440647 - MIR SINE MIR -43 219 2 621 281 49 49 chr11 20342906 20343112 -130440441 - MIR SINE MIR -56 206 1 557 229 157 74 chr11 20343592 20343929 -130439624 - L2 LINE L2 -495 2819 2455 933 284 5 0 chr11 20343973 20344188 -130439365 + MIR SINE MIR 33 248 -14 246 62 0 0 chr11 20344193 20344225 -130439328 + (TTA)n Simple_repeat Simple_repeat 1 32 0 23 33 0 0 chr11 20344950 20344980 -130438573 + AT_rich Low_complexity Low_complexity 1 30 0 2696 150 2 13 chr11 20345155 20345628 -130437925 - L1MB3 LINE L1 0 6183 5716 412 343 42 19 chr11 20345787 20346003 -130437550 + MIR SINE MIR 39 259 -3 190 333 178 11 chr11 20346066 20346156 -130437397 - MIR SINE MIR -64 144 40 295 272 38 8 chr11 20346199 20346332 -130437221 + MER117 DNA MER1_type 27 197 0 875 303 22 4 chr11 20347515 20347746 -130435807 - MIR SINE MIR -6 256 22 486 323 21 5 chr11 20348127 20348319 -130435234 - MER117 DNA MER1_type 0 197 3 592 293 32 45 chr11 20349050 20349296 -130434257 - MIR SINE MIR -10 252 10 262 217 72 12 chr11 20349760 20349843 -130433710 + MIR SINE MIR 128 215 -47 408 88 0 0 chr11 20350155 20350212 -130433341 + (CAT)n Simple_repeat Simple_repeat 2 58 0 270 333 98 25 chr11 20350238 20350442 -130433111 - MIR SINE MIR -36 226 8 202 158 26 0 chr11 20350488 20350526 -130433027 - MER5A DNA MER1_type -76 113 75 720 268 11 17 chr11 20351017 20351196 -130432357 + MER5B DNA MER1_type 1 178 0 242 363 114 21 chr11 20351213 20351450 -130432103 + L2 LINE L2 3014 3272 0 437 310 56 0 chr11 20351471 20351613 -130431940 - L2 LINE L2 -7 3265 3116 298 244 0 61 chr11 20351796 20351878 -130431675 + L2 LINE L2 3196 3272 0 2060 126 17 0 chr11 20352495 20352796 -130430757 + AluSx SINE Alu 1 306 -6 643 276 60 0 chr11 20353615 20353800 -130429753 + MIR SINE MIR 63 258 -4 372 307 100 51 chr11 20354207 20354688 -130428865 + L2 LINE L2 2762 3267 -5 245 353 43 0 chr11 20355253 20355392 -130428161 + MER117 DNA MER1_type 2 146 -51 1138 187 34 5 chr11 20355873 20356082 -130427471 - MER58C DNA MER1_type 0 215 1 249 339 227 4 chr11 20356091 20356351 -130427202 - L2 LINE L2 -12 3260 2943 402 339 54 6 chr11 20356653 20356821 -130426732 + MIR SINE MIR 46 221 -41 866 270 26 17 chr11 20357513 20357746 -130425807 - MIR SINE MIR -14 248 14 446 278 16 0 chr11 20359119 20359245 -130424308 + MIR SINE MIR 113 240 -22 504 319 96 93 chr11 20359498 20359843 -130423710 + L2 LINE L2 2924 3269 -3 497 209 113 0 chr11 20360114 20360229 -130423324 - MIR SINE MIR -10 252 125 488 276 143 33 chr11 20360489 20360699 -130422854 + MIR SINE MIR 20 252 -10 466 169 12 0 chr11 20361697 20361780 -130421773 - MIR SINE MIR -58 150 67 316 389 0 0 chr11 20361771 20361897 -130421656 - MIR3 SINE MIR -1 207 82 * 1450 154 14 0 chr11 20361946 20362167 -130421386 + MER58A DNA MER1_type 1 224 0 658 312 86 33 chr11 20362445 20362655 -130420898 - MIR SINE MIR -28 234 17 203 256 78 101 chr11 20362734 20362863 -130420690 - L2 LINE L2 -9 3263 3138 2141 114 0 0 chr11 20363386 20363683 -130419870 + AluSx SINE Alu 1 297 -15 547 300 47 97 chr11 20363807 20364127 -130419426 + L2 LINE L2 2963 3266 -6 849 239 84 5 chr11 20364797 20365026 -130418527 + MIR SINE MIR 16 261 -1 859 205 95 24 chr11 20365193 20365403 -130418150 - MIR SINE MIR -3 259 35 347 320 140 11 chr11 20365495 20365673 -130417880 - MIR SINE MIR -15 247 47 338 248 215 0 chr11 20366507 20366628 -130416925 - MIR SINE MIR -24 238 92 515 293 47 14 chr11 20366667 20366742 -130416811 - MIR SINE MIR -31 231 160 2368 126 78 8 chr11 20366742 20367140 -130416413 - MSTB LTR MaLR 0 426 1 515 293 47 14 chr11 20367140 20367278 -130416275 - MIR SINE MIR -102 160 5 210 260 0 106 chr11 20367300 20367404 -130416149 + MIR3 SINE MIR 113 205 -3 187 200 0 91 chr11 20367940 20367995 -130415558 + MIR SINE MIR 63 112 -150 28 0 0 0 chr11 20368097 20368125 -130415428 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr11 20368213 20368235 -130415318 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr11 20368552 20368580 -130414973 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr11 20368671 20368692 -130414861 + AT_rich Low_complexity Low_complexity 1 21 0 291 238 30 40 chr11 20368785 20368886 -130414667 + MIR SINE MIR 106 205 -57 268 246 0 31 chr11 20369577 20369642 -130413911 + L2 LINE L2 3198 3260 -12 275 340 50 28 chr11 20370369 20370510 -130413043 + MIR3 SINE MIR 43 186 -22 298 315 63 9 chr11 20370602 20370713 -130412840 + L2 LINE L2 2698 2814 -500 329 259 93 58 chr11 20371386 20371525 -130412028 + MIR3 SINE MIR 20 163 -45 * 858 256 94 13 chr11 20371523 20371757 -130411796 - MIR SINE MIR -1 261 9 623 196 165 0 chr11 20372067 20372225 -130411328 - L1ME3A LINE L1 -2 6168 5985 297 230 0 0 chr11 20372422 20372496 -130411057 + (TG)n Simple_repeat Simple_repeat 1 74 0 552 195 24 32 chr11 20373515 20373638 -130409915 - MER94 DNA DNA -11 123 2 490 323 101 5 chr11 20374210 20374408 -130409145 + MIR SINE MIR 46 262 0 346 269 27 81 chr11 20374456 20374605 -130408948 - MIR3 SINE MIR -32 176 36 189 180 0 0 chr11 20374855 20374905 -130408648 + (TG)n Simple_repeat Simple_repeat 2 51 0 472 237 128 26 chr11 20375232 20375388 -130408165 + MIR SINE MIR 21 192 -70 1025 231 25 33 chr11 20376201 20376443 -130407110 - MIR SINE MIR -21 241 2 380 236 91 18 chr11 20376449 20376559 -130406994 - MIR SINE MIR -74 188 71 291 335 78 22 chr11 20376809 20376988 -130406565 + L2 LINE L2 3125 3313 0 460 255 92 44 chr11 20377037 20377221 -130406332 - MIR SINE MIR -51 157 8 253 275 22 55 chr11 20378458 20378549 -130405004 + L2 LINE L2 3168 3255 -17 1622 165 4 0 chr11 20378567 20378880 -130404673 + AluJb SINE Alu 18 331 0 349 264 79 36 chr11 20378977 20379117 -130404436 - L1ME4a LINE L1 -41 6080 5935 36 23 0 0 chr11 20379159 20379202 -130404351 + AT_rich Low_complexity Low_complexity 1 43 0 498 237 50 29 chr11 20379849 20379988 -130403565 - MER5B DNA MER1_type -33 145 4 200 300 175 0 chr11 20380276 20380396 -130403157 + MIR SINE MIR 68 208 -54 713 286 26 30 chr11 20380488 20380719 -130402834 + MIR SINE MIR 32 261 -1 2485 46 3 0 chr11 20380784 20381091 -130402462 + AluY SINE Alu 1 308 -3 306 0 0 0 chr11 20381142 20381176 -130402377 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 6888 122 65 20 chr11 20382823 20383999 -130399554 - Tigger3b DNA MER2_type 0 1231 2 237 65 0 0 chr11 20384953 20384984 -130398569 + (A)n Simple_repeat Simple_repeat 1 31 0 2368 68 0 16 chr11 20385314 20385623 -130397930 + AluY SINE Alu 1 304 -7 407 108 0 34 chr11 20385642 20385864 -130397689 + AluSp SINE Alu 37 301 -12 318 283 50 17 chr11 20386167 20386287 -130397266 - MER117 DNA MER1_type 0 197 74 558 250 160 0 chr11 20386323 20386479 -130397074 + MER5A DNA MER1_type 3 183 -6 889 156 102 12 chr11 20386526 20386693 -130396860 - MER5A DNA MER1_type -7 182 1 1496 186 39 24 chr11 20387298 20387636 -130395917 - MLT1A1 LTR MaLR -2 363 21 365 238 27 103 chr11 20387795 20387980 -130395573 - MIR SINE MIR 0 262 92 23 33 0 0 chr11 20388664 20388694 -130394859 + GC_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr11 20388832 20388855 -130394698 + GC_rich Low_complexity Low_complexity 1 23 0 26 88 0 0 chr11 20388938 20389006 -130394547 + GC_rich Low_complexity Low_complexity 1 68 0 201 250 0 0 chr11 20389227 20389271 -130394282 + CT-rich Low_complexity Low_complexity 3 46 0 23 0 0 0 chr11 20389830 20389853 -130393700 + GC_rich Low_complexity Low_complexity 1 23 0 186 43 0 0 chr11 20390659 20390682 -130392871 + (TGGGGG)n Simple_repeat Simple_repeat 5 27 0 529 286 126 39 chr11 20392300 20392531 -130391022 + MIR SINE MIR 9 259 -3 718 244 97 8 chr11 20392847 20393085 -130390468 - MIR SINE MIR 0 262 4 281 204 0 0 chr11 20393110 20393159 -130390394 - tRNA-Thr-ACA tRNA tRNA -20 56 8 199 340 68 0 chr11 20393161 20393264 -130390289 - MIR SINE MIR -140 122 13 23 54 0 0 chr11 20394388 20394425 -130389128 + AT_rich Low_complexity Low_complexity 1 37 0 305 283 11 0 chr11 20394841 20394933 -130388620 + (TA)n Simple_repeat Simple_repeat 1 93 0 275 305 66 26 chr11 20395267 20395418 -130388135 - MIR SINE MIR -10 252 96 399 333 47 18 chr11 20395473 20395644 -130387909 + MIR SINE MIR 87 262 0 351 259 27 27 chr11 20396718 20396830 -130386723 - MIR SINE MIR 0 262 151 406 287 32 55 chr11 20396857 20397026 -130386527 + MIR SINE MIR 33 197 -55 269 319 35 26 chr11 20397075 20397188 -130386365 - MIR SINE MIR -131 131 18 1124 231 101 53 chr11 20397536 20398059 -130385494 + L1MC4 LINE L1 7494 8041 -1 32 43 0 0 chr11 20398346 20398392 -130385161 + AT_rich Low_complexity Low_complexity 1 46 0 398 322 148 30 chr11 20398502 20398732 -130384821 + L2 LINE L2 3015 3271 -1 379 223 52 128 chr11 20399292 20399503 -130384050 - MIR SINE MIR -55 207 13 524 313 12 0 chr11 20400121 20400284 -130383269 - MIR3 SINE MIR -6 202 38 877 147 33 0 chr11 20400416 20400566 -130382987 - FRAM SINE Alu -21 155 1 379 237 237 11 chr11 20400695 20400866 -130382687 - MIR SINE MIR -47 215 8 243 276 17 0 chr11 20400943 20401001 -130382552 + L2 LINE L2 3246 3304 -9 804 255 43 38 chr11 20401126 20401361 -130382192 - MIR SINE MIR -13 249 14 238 211 0 18 chr11 20401434 20401491 -130382062 - MIR SINE MIR -137 125 70 563 197 39 16 chr11 20402485 20402612 -130380941 + L2 LINE L2 2925 3054 -259 516 245 185 26 chr11 20402751 20402902 -130380651 + MER5A DNA MER1_type 12 186 -3 180 323 31 42 chr11 20404254 20404350 -130379203 + MIR3 SINE MIR 3 97 -111 267 281 101 0 chr11 20404415 20404504 -130379049 - MER5B DNA MER1_type -73 105 8 557 310 67 17 chr11 20404536 20404775 -130378778 + MIR SINE MIR 2 252 -10 570 319 11 21 chr11 20405025 20405216 -130378337 - MER5A DNA MER1_type 0 189 1 516 245 117 36 chr11 20405968 20406164 -130377389 - MIR SINE MIR -16 246 35 656 146 0 173 chr11 20406919 20407145 -130376408 - MER53 DNA DNA -2 187 1 463 303 42 35 chr11 20407434 20407576 -130375977 - L2 LINE L2 -19 3253 3111 303 291 33 93 chr11 20407696 20407878 -130375675 + MIR SINE MIR 34 204 -58 662 221 126 63 chr11 20408036 20408060 -130375493 + MIR SINE MIR 8 29 -233 1853 93 0 37 chr11 20408060 20408329 -130375224 + AluSx SINE Alu 40 298 -14 662 221 126 63 chr11 20408329 20408526 -130375027 + MIR SINE MIR 29 243 -19 289 255 162 6 chr11 20408563 20408684 -130374869 - MIR SINE MIR -72 136 42 474 320 73 23 chr11 20409264 20409483 -130374070 - MIR SINE MIR -19 243 14 231 215 62 0 chr11 20409868 20409933 -130373620 + (ATGGTG)n Simple_repeat Simple_repeat 3 71 0 708 247 6 6 chr11 20409933 20410091 -130373462 - MIR SINE MIR -2 260 103 636 290 107 13 chr11 20410976 20411200 -130372353 + MIR SINE MIR 7 251 -11 458 269 157 56 chr11 20411497 20411694 -130371859 - MIR SINE MIR -6 256 40 264 279 35 35 chr11 20412691 20412777 -130370776 - MIR SINE MIR -149 113 28 361 303 99 25 chr11 20413357 20413519 -130370034 - L2 LINE L2 -22 3250 3077 536 313 35 23 chr11 20413581 20413837 -130369716 + MIR SINE MIR 4 262 0 1312 158 0 5 chr11 20415036 20415251 -130368302 + AluJb SINE Alu 84 297 -15 493 253 147 11 chr11 20415317 20415507 -130368046 - MIR SINE MIR -12 250 35 261 301 11 11 chr11 20415684 20415777 -130367776 + MER102a DNA MER1_type 237 329 -1 189 293 73 24 chr11 20416245 20416327 -130367226 - L2 LINE L2 -255 3017 2932 2363 50 3 7 chr11 20416334 20416634 -130366919 + SVA Other Other 1088 1386 0 721 245 35 49 chr11 20416757 20417011 -130366542 - MIR SINE MIR 0 262 16 4382 138 22 106 chr11 20417204 20418188 -130365365 - L1MA9 LINE L1 -37 6275 5374 1032 219 26 22 chr11 20418243 20418471 -130365082 + MIR SINE MIR 20 248 -14 249 293 129 10 chr11 20419087 20419254 -130364299 + MIR3 SINE MIR 5 149 -59 552 273 127 10 chr11 20420053 20420258 -130363295 - MIR SINE MIR -14 248 20 326 284 90 40 chr11 20420925 20421126 -130362427 - L1MC/D LINE L1 -2044 5764 5554 624 178 178 6 chr11 20421340 20421503 -130362050 + ORSL DNA AcHobo 84 274 -1 2336 123 9 6 chr11 20421638 20421972 -130361581 - MER1B DNA MER1_type -2 335 1 327 211 11 74 chr11 20422082 20422177 -130361376 - MIR SINE MIR -111 151 63 3478 43 0 2 chr11 20422949 20423366 -130360187 - L1PA4 LINE L1 -3 6152 5737 390 243 112 33 chr11 20423366 20423518 -130360035 - MIR SINE MIR -19 243 80 181 297 47 0 chr11 20424298 20424362 -130359191 - MIR SINE MIR -96 166 100 259 282 224 0 chr11 20424488 20424573 -130358980 + MIR SINE MIR 48 151 -111 465 304 35 0 chr11 20424578 20424693 -130358860 + L2 LINE L2 3154 3272 0 198 279 101 38 chr11 20424698 20424777 -130358776 + MIR SINE MIR 172 255 -7 362 301 49 24 chr11 20424941 20425064 -130358489 - MIR3 SINE MIR -76 132 7 394 320 75 0 chr11 20426669 20426816 -130356737 - MIR3 SINE MIR -9 199 42 820 261 66 33 chr11 20426903 20427024 -130356529 - MIR SINE MIR -12 250 134 959 191 48 52 chr11 20427024 20427234 -130356319 - MER63A DNA MER1_type 0 210 2 820 261 66 33 chr11 20427234 20427353 -130356200 - MIR SINE MIR -128 134 2 812 291 169 0 chr11 20427532 20427876 -130355677 + L2 LINE L2 2863 3264 -49 299 218 23 23 chr11 20428516 20428603 -130354950 - L1ME4a LINE L1 -71 6050 5964 474 288 66 20 chr11 20428618 20428816 -130354737 - L1ME4a LINE L1 -212 5909 5703 1688 197 41 19 chr11 20428894 20429260 -130354293 + MLT1A2 LTR MaLR 1 374 0 276 182 0 0 chr11 20429322 20429377 -130354176 + L2 LINE L2 2920 2974 -298 230 146 0 0 chr11 20429434 20429475 -130354078 + HsTC2 DNA Tc2 26 66 -1832 224 296 63 101 chr11 20429576 20429735 -130353818 + L2 LINE L2 3068 3220 -52 195 269 203 11 chr11 20430400 20430582 -130352971 - L2 LINE L2 -189 3083 2867 356 260 127 27 chr11 20431232 20431382 -130352171 - MIR SINE MIR -57 205 41 1530 204 19 22 chr11 20431475 20431788 -130351765 - MLT1C LTR MaLR 0 467 156 2010 156 26 164 chr11 20431806 20432337 -130351216 - LTR32 LTR ERVL 0 471 14 524 194 97 8 chr11 20432336 20432460 -130351093 - MLT1C LTR MaLR -327 140 6 * 264 59 0 0 chr11 20433049 20433083 -130350470 + (GGCTG)n Simple_repeat Simple_repeat 1 34 0 409 225 0 34 chr11 20433537 20433626 -130349927 + MIR SINE MIR 65 150 -112 813 260 53 13 chr11 20433747 20433998 -130349555 - MIR SINE MIR 0 262 13 218 238 131 24 chr11 20434105 20434189 -130349364 - MIR SINE MIR -64 198 106 418 273 234 22 chr11 20434201 20434556 -130348997 - L2 LINE L2 -20 3293 2864 2122 69 55 3 chr11 20435145 20435436 -130348117 - AluY SINE Alu -4 307 2 199 257 43 29 chr11 20435439 20435509 -130348044 - MIR3 SINE MIR -24 184 114 651 295 33 33 chr11 20435652 20435893 -130347660 + MIR SINE MIR 22 262 0 899 287 124 27 chr11 20437259 20437663 -130345890 - L2 LINE L2 0 3313 2871 593 328 110 58 chr11 20437814 20438015 -130345538 + L2 LINE L2 2469 2658 -655 2010 125 0 3 chr11 20438015 20438319 -130345234 + AluSx SINE Alu 1 303 -9 593 328 110 58 chr11 20438319 20438664 -130344889 + L2 LINE L2 2658 2983 -330 2231 116 0 0 chr11 20438664 20438967 -130344586 - AluSc SINE Alu -6 303 1 593 328 110 58 chr11 20438967 20439217 -130344336 + L2 LINE L2 2983 3312 -1 222 136 0 0 chr11 20439831 20439875 -130343678 + (T)n Simple_repeat Simple_repeat 1 44 0 216 200 11 89 chr11 20440589 20440679 -130342874 + MIR SINE MIR 123 205 -57 1059 277 80 58 chr11 20440788 20441287 -130342266 + L2 LINE L2 2302 2811 -503 308 160 0 0 chr11 20441287 20441337 -130342216 - MER58 DNA MER1_type -1 2419 2370 341 201 7 45 chr11 20441481 20441635 -130341918 + CT-rich Low_complexity Low_complexity 1 148 0 433 232 9 64 chr11 20441640 20441766 -130341787 - MER58 DNA MER1_type -115 100 1 788 287 86 41 chr11 20441768 20442256 -130341297 + L2 LINE L2 2804 3313 0 31 0 0 0 chr11 20442276 20442307 -130341246 + AT_rich Low_complexity Low_complexity 1 31 0 344 277 118 56 chr11 20443497 20443678 -130339875 + MIR SINE MIR 24 212 -50 658 342 30 0 chr11 20443752 20443983 -130339570 - MIR SINE MIR -3 259 22 379 301 139 5 chr11 20444591 20444800 -130338753 + L3 LINE CR1 1083 1319 -258 542 313 57 9 chr11 20444841 20445052 -130338501 + MIR SINE MIR 9 229 -33 331 355 16 16 chr11 20445107 20445231 -130338322 + MIR SINE MIR 22 145 -63 28 29 0 0 chr11 20446406 20446441 -130337112 + AT_rich Low_complexity Low_complexity 1 35 0 301 223 43 53 chr11 20447192 20447286 -130336267 + MIR3 SINE MIR 111 203 -5 181 372 77 0 chr11 20447299 20447377 -130336176 - L2 LINE L2 -40 3232 3149 239 325 7 22 chr11 20447554 20447687 -130335866 - L2 LINE L2 -248 3024 2896 180 0 0 0 chr11 20447975 20447995 -130335558 + (TTCA)n Simple_repeat Simple_repeat 2 21 0 214 311 168 31 chr11 20449129 20449290 -130334263 - MIR3 SINE MIR -15 193 11 193 371 57 17 chr11 20449943 20450118 -130333435 + L2 LINE L2 2558 2739 -575 236 329 0 0 chr11 20450198 20450283 -130333270 + L2 LINE L2 2904 2988 -284 1669 167 4 4 chr11 20450371 20450646 -130332907 - AluJo SINE Alu -37 275 1 23 0 0 0 chr11 20451351 20451374 -130332179 + AT_rich Low_complexity Low_complexity 1 23 0 838 274 160 30 chr11 20451641 20452176 -130331377 - L2 LINE L2 -5 3308 2692 472 111 20 0 chr11 20452747 20452846 -130330707 + (TG)n Simple_repeat Simple_repeat 1 101 0 24 67 0 0 chr11 20453255 20453300 -130330253 + GC_rich Low_complexity Low_complexity 1 45 0 27 49 0 0 chr11 20453454 20453495 -130330058 + GC_rich Low_complexity Low_complexity 1 41 0 313 327 140 0 chr11 20454464 20454614 -130328939 + MIR SINE MIR 92 262 0 304 40 40 0 chr11 20454663 20454713 -130328840 + (CAAAAA)n Simple_repeat Simple_repeat 1 52 0 194 188 0 0 chr11 20455732 20455764 -130327789 + MIR SINE MIR 48 79 -183 319 271 83 36 chr11 20456678 20456926 -130326627 + MIR3 SINE MIR 1 258 -4 315 340 95 0 chr11 20456970 20457045 -130326508 + L1ME4a LINE L1 5960 6026 -95 248 0 31 0 chr11 20457045 20457077 -130326476 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 315 340 95 0 chr11 20457077 20457148 -130326405 + L1ME4a LINE L1 6026 6120 -1 629 246 120 0 chr11 20457175 20457342 -130326211 - MIR SINE MIR -2 260 74 789 139 0 0 chr11 20457946 20458075 -130325478 - L1MA9 LINE L1 -5 6307 6179 668 278 65 37 chr11 20459775 20460020 -130323533 + MIR SINE MIR 11 262 0 266 270 153 31 chr11 20460076 20460272 -130323281 - L2 LINE L2 -52 3261 3042 479 123 0 0 chr11 20460277 20460342 -130323211 + AluS SINE Alu 2 66 -247 781 237 116 5 chr11 20460557 20460764 -130322789 + MIR SINE MIR 19 248 -14 189 0 0 0 chr11 20460767 20460788 -130322765 + (CAT)n Simple_repeat Simple_repeat 3 23 0 252 333 33 25 chr11 20461048 20461168 -130322385 - MIR3 SINE MIR -7 201 81 213 305 17 0 chr11 20462252 20462311 -130321242 + L2 LINE L2 3235 3294 -19 784 177 0 109 chr11 20462732 20462924 -130320629 + FAM SINE Alu 4 174 -1 1543 164 0 77 chr11 20462975 20463299 -130320254 - AluJo SINE Alu -11 301 3 270 302 70 0 chr11 20463431 20463517 -130320036 + MIR SINE MIR 84 175 -87 833 310 162 29 chr11 20463915 20464004 -130319549 + L2 LINE L2 2323 2399 -873 1018 195 37 19 chr11 20464004 20464219 -130319334 - MER20 DNA MER1_type 0 219 1 833 310 162 29 chr11 20464219 20464970 -130318583 + L2 LINE L2 2399 3272 0 243 294 0 47 chr11 20465084 20465169 -130318384 + L2 LINE L2 3233 3313 0 235 263 0 18 chr11 20465384 20465441 -130318112 + L2 LINE L2 3216 3271 -1 432 248 33 33 chr11 20466132 20466253 -130317300 - MIR3 SINE MIR -3 205 85 203 262 0 33 chr11 20466378 20466439 -130317114 + MIR SINE MIR 204 262 0 409 288 135 6 chr11 20466445 20466608 -130316945 + MIR SINE MIR 67 250 -12 911 246 43 17 chr11 20466807 20467061 -130316492 - MIR SINE MIR -10 252 1 2247 103 7 0 chr11 20468812 20469122 -130314431 + AluSx SINE Alu 1 312 0 604 305 124 33 chr11 20469406 20470069 -130313484 + L2 LINE L2 2551 3313 0 210 398 11 0 chr11 20470893 20470981 -130312572 - MIR SINE MIR -90 172 84 543 250 69 5 chr11 20471196 20471400 -130312153 + MER113 DNA MER1_type? 1 217 -304 248 215 28 93 chr11 20472005 20472112 -130311441 - LTR33A LTR ERVL -20 503 404 324 293 162 59 chr11 20472311 20472533 -130311020 - MIR SINE MIR -14 248 4 418 276 77 46 chr11 20473558 20473754 -130309799 + MIR SINE MIR 7 208 -54 308 289 206 39 chr11 20474545 20474725 -130308828 - MIR SINE MIR -33 229 20 405 167 0 0 chr11 20476558 20476636 -130306917 + (TG)n Simple_repeat Simple_repeat 2 79 0 858 262 34 9 chr11 20477568 20477801 -130305752 + MIR SINE MIR 9 247 -15 455 309 216 24 chr11 20477864 20478239 -130305314 + L3 LINE CR1 1128 1574 -3 805 126 0 0 chr11 20478497 20478616 -130304937 + FRAM SINE Alu 49 167 -9 425 222 51 8 chr11 20479381 20479498 -130304055 + MIR SINE MIR 84 205 -57 210 118 0 0 chr11 20480530 20480564 -130302989 + (TCCA)n Simple_repeat Simple_repeat 3 36 0 246 264 94 0 chr11 20480790 20480896 -130302657 - L2 LINE L2 -324 2948 2833 385 281 22 30 chr11 20481668 20481803 -130301750 - MIR SINE MIR -78 184 51 318 356 53 0 chr11 20482403 20482535 -130301018 + MIR SINE MIR 9 147 -115 342 263 39 38 chr11 20482790 20482947 -130300606 + MER5A DNA MER1_type 12 182 -7 395 248 206 7 chr11 20483925 20484066 -130299487 + MIR SINE MIR 77 245 -17 22 35 0 0 chr11 20484407 20484436 -130299117 + AT_rich Low_complexity Low_complexity 1 29 0 214 250 0 0 chr11 20485261 20485305 -130298248 + MER5B DNA MER1_type 5 48 -130 5336 160 90 52 chr11 20485317 20486595 -130296958 - L1MC3 LINE L1 0 7785 6460 318 267 124 29 chr11 20486829 20486934 -130296619 + L2 LINE L2 3155 3269 -3 368 238 0 12 chr11 20487727 20487807 -130295746 - L2 LINE L2 -12 3301 3223 287 250 16 0 chr11 20487854 20487918 -130295635 - MER5A DNA MER1_type -1 188 124 663 169 0 66 chr11 20488012 20488148 -130295405 - MER5A DNA MER1_type -54 135 9 460 288 122 56 chr11 20488139 20488459 -130295094 + L2 LINE L2 2972 3312 -1 * 761 181 0 8 chr11 20490518 20490651 -130292902 - FLAM_A SINE Alu 0 133 2 186 306 134 59 chr11 20491563 20491749 -130291804 + MIR SINE MIR 42 241 -21 405 250 40 32 chr11 20492386 20492510 -130291043 - MIR SINE MIR -44 218 94 279 0 0 0 chr11 20494119 20494150 -130289403 + (T)n Simple_repeat Simple_repeat 1 31 0 1766 197 82 8 chr11 20494178 20494568 -130288985 + MER63B DNA MER1_type 18 436 0 352 345 23 0 chr11 20494791 20494965 -130288588 + (TCCA)n Simple_repeat Simple_repeat 3 180 0 272 285 80 15 chr11 20495176 20495313 -130288240 - L2 LINE L2 -216 3056 2911 382 248 118 19 chr11 20495565 20495726 -130287827 - MIR SINE MIR -6 256 80 303 262 71 0 chr11 20496529 20496613 -130286940 + MIR SINE MIR 64 153 -109 294 281 0 0 chr11 20496609 20496673 -130286880 - L2 LINE L2 -2 3311 3248 * 2552 46 0 0 chr11 20496868 20497170 -130286383 + AluY SINE Alu 1 302 -9 504 261 119 17 chr11 20497809 20497985 -130285568 + MIR SINE MIR 35 228 -34 378 266 184 37 chr11 20498004 20498222 -130285331 - MIR SINE MIR 0 262 13 1779 149 10 3 chr11 20498945 20499099 -130284454 - AluJb SINE Alu -22 290 132 2002 132 0 0 chr11 20499099 20499395 -130284158 - AluSq SINE Alu -17 296 1 1779 149 10 3 chr11 20499395 20499528 -130284025 - AluJb SINE Alu -180 132 1 1242 77 48 0 chr11 20499644 20499812 -130283741 + L1PA7 LINE L1 5979 6154 0 469 268 147 21 chr11 20499985 20500175 -130283378 - MIR SINE MIR -2 260 47 210 274 69 49 chr11 20500386 20500488 -130283065 + MIR SINE MIR 80 183 -79 2249 106 3 0 chr11 20500898 20501209 -130282344 + AluSx SINE Alu 1 312 0 402 247 11 33 chr11 20502624 20502806 -130280747 + CT-rich Low_complexity Low_complexity 1 178 0 740 78 11 78 chr11 20502806 20502997 -130280556 + (TTTCC)n Simple_repeat Simple_repeat 3 180 0 516 178 17 46 chr11 20502963 20503137 -130280416 + CT-rich Low_complexity Low_complexity 2 170 0 * 422 132 0 49 chr11 20503122 20503266 -130280287 + (TTTC)n Simple_repeat Simple_repeat 1 137 0 * 314 131 49 16 chr11 20503266 20503327 -130280226 + CT-rich Low_complexity Low_complexity 5 67 0 940 219 131 8 chr11 20503327 20503564 -130279989 - AluSg SINE Alu -44 266 1 554 335 27 0 chr11 20503612 20503800 -130279753 - MIR SINE MIR -16 246 54 612 213 67 107 chr11 20505048 20505273 -130278280 - MER58A DNA MER1_type -8 216 1 201 233 0 96 chr11 20505290 20505363 -130278190 - MIR SINE MIR -111 151 86 37 0 0 0 chr11 20505496 20505533 -130278020 + AT_rich Low_complexity Low_complexity 1 37 0 994 154 24 172 chr11 20505627 20505965 -130277588 + AluJo SINE Alu 3 290 -12 1841 141 36 19 chr11 20505981 20506342 -130277211 - L1MB4 LINE L1 -10 6170 5804 1086 155 5 5 chr11 20506342 20506529 -130277024 - AluJb SINE Alu -63 249 63 450 244 126 0 chr11 20507310 20507445 -130276108 - MIR SINE MIR -2 260 109 499 297 77 11 chr11 20507538 20507720 -130275833 - MIR SINE MIR -12 250 57 2199 112 0 0 chr11 20507746 20508050 -130275503 + AluSg SINE Alu 1 304 -6 923 230 75 2 chr11 20508182 20508396 -130275157 + MIR SINE MIR 30 256 -6 316 221 0 133 chr11 20508398 20508511 -130275042 - L2 LINE L2 -19 3294 3197 204 291 0 0 chr11 20511356 20511383 -130272170 + CT-rich Low_complexity Low_complexity 2 28 -28 2710 222 42 14 chr11 20511383 20511960 -130271593 - MLT1E LTR MaLR 0 593 1 204 291 0 0 chr11 20511960 20511987 -130271566 + CT-rich Low_complexity Low_complexity 27 56 0 531 308 108 0 chr11 20511987 20512201 -130271352 - MIR SINE MIR -25 237 1 405 250 66 22 chr11 20512747 20512883 -130270670 + MER117 DNA MER1_type 46 187 -10 323 279 58 0 chr11 20513444 20513530 -130270023 - L1MC4 LINE L1 -1337 6705 6615 26 74 0 0 chr11 20513541 20513595 -130269958 + AT_rich Low_complexity Low_complexity 1 54 0 208 337 12 24 chr11 20513791 20513874 -130269679 + L2 LINE L2 3175 3256 -16 440 333 75 0 chr11 20514042 20514078 -130269475 - L3 LINE CR1 -17 1560 1528 2728 13 0 0 chr11 20514078 20514384 -130269169 + AluYb8 SINE Alu 1 306 -12 440 333 75 0 chr11 20514384 20514521 -130269032 - L3 LINE CR1 -49 1528 1374 2014 187 17 3 chr11 20514522 20514880 -130268673 - MLT1A1 LTR MaLR -2 363 1 2836 239 89 25 chr11 20514945 20515947 -130267606 + L1MC4 LINE L1 6977 8042 0 261 331 52 15 chr11 20516138 20516274 -130267279 - L2 LINE L2 -217 3055 2915 1994 139 3 0 chr11 20516424 20516725 -130266828 - AluSx SINE Alu -10 302 1 250 343 4 27 chr11 20517094 20517237 -130266316 + GA-rich Low_complexity Low_complexity 1 139 0 222 196 130 0 chr11 20517359 20517405 -130266148 + MIR SINE MIR 67 118 -90 23 0 0 0 chr11 20517945 20517968 -130265585 + AT_rich Low_complexity Low_complexity 1 23 0 565 252 0 8 chr11 20518630 20518749 -130264804 - L2 LINE L2 -5 3308 3191 810 276 53 16 chr11 20519633 20519879 -130263674 - MIR SINE MIR -1 261 7 1029 171 151 0 chr11 20522252 20522457 -130261096 - MER46A DNA MER2_type 0 236 1 202 140 0 60 chr11 20522590 20522640 -130260913 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 328 296 103 64 chr11 20523661 20523972 -130259581 - L2 LINE L2 -6 3266 2944 487 292 62 20 chr11 20525293 20525475 -130258078 + MIR SINE MIR 13 197 -56 410 260 16 55 chr11 20525517 20525644 -130257909 - MIR SINE MIR -4 258 137 194 256 0 0 chr11 20525644 20525683 -130257870 + MIR SINE MIR 222 260 -2 376 339 57 23 chr11 20526346 20526523 -130257030 + MIR SINE MIR 77 259 -3 259 361 57 0 chr11 20526736 20526858 -130256695 + MIR SINE MIR 85 213 -49 * 538 317 100 9 chr11 20526830 20527060 -130256493 - MIR SINE MIR -2 260 10 233 351 133 0 chr11 20527729 20527917 -130255636 + L2 LINE L2 2730 2942 -372 382 259 0 36 chr11 20528605 20528717 -130254836 - MIR SINE MIR -38 224 117 1012 240 9 5 chr11 20528862 20529083 -130254470 - MIR SINE MIR -38 224 3 464 216 151 14 chr11 20529239 20529378 -130254175 + MIR SINE MIR 23 180 -82 2761 138 50 44 chr11 20529522 20530024 -130253529 + MLT1D LTR MaLR 1 505 0 182 284 14 108 chr11 20530545 20530619 -130252934 + L2 LINE L2 3200 3266 -6 817 237 30 0 chr11 20530871 20531040 -130252513 - MER5A DNA MER1_type -5 184 11 1343 135 45 9 chr11 20531203 20531425 -130252128 - MER30 DNA MER1_type 0 230 1 268 271 169 25 chr11 20531617 20531735 -130251818 + L2 LINE L2 3134 3268 -4 466 165 82 135 chr11 20532284 20532454 -130251099 + MER102a DNA MER1_type 169 329 -1 472 222 61 83 chr11 20532826 20533006 -130250547 + MIR SINE MIR 49 224 -38 331 209 0 15 chr11 20533070 20533137 -130250416 - MIR SINE MIR -109 153 88 452 145 0 0 chr11 20533827 20533903 -130249650 + MER116 DNA Mariner 2 77 -3 221 269 15 30 chr11 20534373 20534440 -130249113 + MIR SINE MIR 189 254 -8 237 295 48 60 chr11 20535192 20535358 -130248195 + L2 LINE L2 3150 3313 0 249 176 0 0 chr11 20535559 20535610 -130247943 - L1MA9 LINE L1 -71 6241 6191 2666 164 33 35 chr11 20535624 20535657 -130247896 - L1MA9 LINE L1 -232 6080 6048 2273 83 7 0 chr11 20535657 20535959 -130247594 - AluY SINE Alu -7 304 1 2666 164 33 35 chr11 20535959 20536444 -130247109 - L1MA9 LINE L1 -264 6048 5563 331 365 40 0 chr11 20536756 20536882 -130246671 - MIR SINE MIR -45 217 87 5579 27 0 0 chr11 20536943 20537571 -130245982 - SVA Other Other 0 1386 759 1335 89 11 37 chr11 20538186 20538649 -130244904 - SVA Other Other -520 866 549 5845 60 20 50 chr11 20538665 20539553 -130244000 - SVA Other Other -520 866 5 234 0 0 0 chr11 20539582 20539608 -130243945 + (GGGAGA)n Simple_repeat Simple_repeat 2 27 0 404 317 124 16 chr11 20539965 20540151 -130243402 - MIR SINE MIR -34 228 23 219 330 90 50 chr11 20541783 20541983 -130241570 + L2 LINE L2 2837 3044 -228 * 443 219 26 35 chr11 20541968 20542082 -130241471 - L2 LINE L2 0 3313 3201 551 288 15 8 chr11 20542259 20542391 -130241162 + L2 LINE L2 3140 3272 0 257 248 46 46 chr11 20544438 20544547 -130239006 + MIR SINE MIR 31 139 -69 180 244 22 0 chr11 20544589 20544634 -130238919 + L2 LINE L2 3227 3272 0 981 182 22 11 chr11 20544655 20544836 -130238717 - MER20 DNA MER1_type 0 219 37 28 0 0 0 chr11 20545462 20545490 -130238063 + AT_rich Low_complexity Low_complexity 1 28 0 201 221 70 58 chr11 20545810 20545896 -130237657 + MIR SINE MIR 48 134 -74 491 326 72 23 chr11 20549111 20549332 -130234221 - MIR SINE MIR -6 256 25 677 250 0 7 chr11 20550699 20550847 -130232706 - MIR SINE MIR -13 249 103 470 330 95 25 chr11 20551617 20551932 -130231621 - L2 LINE L2 0 3272 2936 234 239 188 26 chr11 20552812 20552929 -130230624 + MIR3 SINE MIR 6 141 -67 1294 182 182 36 chr11 20553226 20553355 -130230198 + L1MB7 LINE L1 5744 5853 -331 1993 142 0 0 chr11 20553355 20553650 -130229903 + AluSx SINE Alu 1 295 -17 1294 182 182 36 chr11 20553650 20553671 -130229882 + L1MB7 LINE L1 5853 5870 -314 2417 124 34 0 chr11 20553671 20554025 -130229528 - MER47A DNA MER2_type 0 366 1 1294 182 182 36 chr11 20554025 20554257 -130229296 + L1MB7 LINE L1 5870 6183 -1 1971 103 0 11 chr11 20554494 20554806 -130228747 - AluSc SINE Alu 0 309 1 385 293 36 48 chr11 20554818 20554985 -130228568 - MIR SINE MIR -66 196 32 186 43 0 0 chr11 20555364 20555387 -130228166 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 207 206 16 0 chr11 20555401 20555464 -130228089 + (TA)n Simple_repeat Simple_repeat 1 64 0 25 0 0 0 chr11 20555492 20555517 -130228036 + AT_rich Low_complexity Low_complexity 1 25 0 672 273 150 0 chr11 20555546 20555766 -130227787 + MIR SINE MIR 10 262 0 2494 56 0 0 chr11 20555948 20556252 -130227301 - AluY SINE Alu -7 304 1 401 278 90 14 chr11 20556257 20556401 -130227152 + MIR3 SINE MIR 47 201 -7 318 257 29 73 chr11 20556594 20556730 -130226823 - MER94 DNA DNA -4 130 1 427 290 126 67 chr11 20556806 20557044 -130226509 - MIR SINE MIR -1 261 10 180 97 0 0 chr11 20558409 20558440 -130225113 + (CAG)n Simple_repeat Simple_repeat 2 32 0 485 308 156 12 chr11 20560081 20560331 -130223222 - L2 LINE L2 0 3313 3028 837 361 58 5 chr11 20560523 20560919 -130222634 - L2 LINE L2 -523 2791 2375 225 0 0 0 chr11 20563262 20563287 -130220266 + (TTG)n Simple_repeat Simple_repeat 2 26 0 660 251 126 13 chr11 20563588 20563819 -130219734 - MIR SINE MIR -3 259 3 324 119 0 68 chr11 20564383 20564442 -130219111 - AluJo SINE Alu -4 298 244 1289 174 58 0 chr11 20564529 20564753 -130218800 - AluJo SINE Alu -69 243 7 395 274 125 6 chr11 20565863 20566031 -130217522 + MIR SINE MIR 8 195 -67 26 0 0 0 chr11 20566038 20566064 -130217489 + AT_rich Low_complexity Low_complexity 1 26 0 205 299 0 0 chr11 20568647 20568714 -130214839 - MIR SINE MIR -109 153 87 180 0 0 0 chr11 20570439 20570459 -130213094 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 1288 152 0 0 chr11 20570462 20570646 -130212907 - AluSg/x SINE Alu -34 278 95 207 267 17 17 chr11 20572279 20572339 -130211214 + CT-rich Low_complexity Low_complexity 5 64 0 243 170 0 0 chr11 20572496 20572543 -130211010 + (TATATG)n Simple_repeat Simple_repeat 5 51 0 414 250 38 23 chr11 20572606 20572738 -130210815 - MIR SINE MIR -104 158 25 2364 78 3 0 chr11 20573217 20573511 -130210042 - AluSq SINE Alu -18 295 1 1450 130 160 37 chr11 20573550 20573858 -130209695 - AluSx SINE Alu 0 341 1 303 288 120 0 chr11 20573877 20574002 -130209551 - MIR SINE MIR -76 186 47 1338 169 46 11 chr11 20574657 20574918 -130208635 - L1MB2 LINE L1 -11 6160 5891 363 126 0 13 chr11 20575053 20575120 -130208433 - L1MB3 LINE L1 -296 5887 5825 5304 23 5 2 chr11 20575264 20575874 -130207679 + L1PA4 LINE L1 5543 6154 -1 22 0 0 0 chr11 20576365 20576387 -130207166 + AT_rich Low_complexity Low_complexity 1 22 0 759 238 117 92 chr11 20576708 20577296 -130206257 - L1MC4a LINE L1 -27 6094 5492 287 323 132 34 chr11 20577996 20578231 -130205322 - L2 LINE L2 0 3272 3015 209 329 13 0 chr11 20578840 20578916 -130204637 + MIR SINE MIR 24 100 -162 240 357 83 24 chr11 20579531 20579699 -130203854 + MER5A DNA MER1_type 8 185 -4 1968 136 0 0 chr11 20579747 20580019 -130203534 + AluSx SINE Alu 2 273 -39 250 278 44 22 chr11 20580061 20580151 -130203402 + MIR SINE MIR 159 250 -12 516 283 67 6 chr11 20582729 20582909 -130200644 - L2 LINE L2 -18 3295 3105 648 278 22 40 chr11 20583177 20583404 -130200149 + L3 LINE CR1 1342 1564 -13 1477 243 73 10 chr11 20584554 20584949 -130198604 - MLT1H LTR MaLR -129 420 1 433 341 12 0 chr11 20585426 20585590 -130197963 + MIR SINE MIR 27 192 -70 948 165 60 15 chr11 20586969 20587169 -130196384 + MER3 DNA MER1_type 1 209 0 1368 137 68 45 chr11 20587238 20587530 -130196023 + L1MB7 LINE L1 5886 6184 0 457 294 64 43 chr11 20588503 20588738 -130194815 - MIR SINE MIR -17 245 6 213 333 0 13 chr11 20588766 20588841 -130194712 - L2 LINE L2 -18 3295 3222 2151 112 7 10 chr11 20589059 20589363 -130194190 + AluSx SINE Alu 1 303 -9 261 328 134 18 chr11 20589732 20589903 -130193650 - L2 LINE L2 -185 3087 2897 210 277 0 0 chr11 20589982 20590029 -130193524 + L2 LINE L2 3150 3196 -76 184 304 14 14 chr11 20590060 20590129 -130193424 - MIR3 SINE MIR -134 74 6 284 238 114 19 chr11 20592126 20592231 -130191322 + MIR SINE MIR 17 131 -77 733 262 30 35 chr11 20592469 20592671 -130190882 - MER63A DNA MER1_type 0 210 10 2893 7 0 0 chr11 20593020 20593326 -130190227 - AluYb8 SINE Alu -12 306 1 204 200 0 0 chr11 20593439 20593484 -130190069 + CT-rich Low_complexity Low_complexity 3 47 0 431 319 57 60 chr11 20594014 20594349 -130189204 + L2 LINE L2 2931 3264 -8 785 230 133 0 chr11 20594388 20594614 -130188939 + MIR SINE MIR 5 260 -2 552 245 15 2 chr11 20595154 20595338 -130188215 - MER58A DNA MER1_type 0 224 5 2172 97 10 17 chr11 20596100 20596399 -130187154 - AluSx SINE Alu -15 297 1 345 283 9 0 chr11 20596467 20596573 -130186980 + MIR SINE MIR 47 153 -109 204 273 0 0 chr11 20597451 20597495 -130186058 + L2 LINE L2 3232 3275 -38 2047 136 3 3 chr11 20598334 20598628 -130184925 + AluJb SINE Alu 1 294 -18 394 257 63 48 chr11 20598644 20598778 -130184775 + MIR SINE MIR 52 192 -70 2106 110 3 3 chr11 20598778 20599069 -130184484 - AluSg SINE Alu -19 291 1 394 257 63 48 chr11 20599069 20599140 -130184413 + MIR SINE MIR 192 260 -2 609 236 28 11 chr11 20600198 20600376 -130183177 + MIR SINE MIR 81 261 -1 418 288 7 29 chr11 20600973 20601112 -130182441 - MER5A DNA MER1_type -3 186 51 335 341 18 6 chr11 20601109 20601276 -130182277 + MIR3 SINE MIR 40 208 0 * 281 387 7 7 chr11 20601272 20601414 -130182139 - L3 LINE CR1 -506 1071 930 * 501 231 18 47 chr11 20601765 20601934 -130181619 - MER103 DNA DNA 0 166 3 201 39 0 0 chr11 20602778 20602804 -130180749 + (A)n Simple_repeat Simple_repeat 1 26 0 3324 203 43 17 chr11 20603444 20603951 -130179602 - L1M4 LINE L1 -690 5484 4954 2348 107 3 0 chr11 20603951 20604250 -130179303 + AluSg SINE Alu 1 300 -10 3324 203 43 17 chr11 20604250 20604633 -130178920 - L1M4 LINE L1 -1220 4954 4583 180 77 0 0 chr11 20605120 20605146 -130178407 + (A)n Simple_repeat Simple_repeat 1 26 0 2092 106 58 0 chr11 20605782 20606074 -130177479 + AluSq SINE Alu 1 309 -4 411 133 0 0 chr11 20606108 20606168 -130177385 + AluS SINE Alu 220 279 -31 266 0 29 0 chr11 20606171 20606205 -130177348 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 307 210 156 70 chr11 20606208 20606394 -130177159 - MER112 DNA MER1_type -57 203 2 284 243 63 18 chr11 20606620 20606731 -130176822 + MER113 DNA MER1_type? 1 116 -405 290 323 65 0 chr11 20607213 20607337 -130176216 - MIR3 SINE MIR -13 195 64 1707 141 53 47 chr11 20607455 20607754 -130175799 + AluSx SINE Alu 1 301 -11 213 302 63 107 chr11 20608385 20608590 -130174963 + L2 LINE L2 3027 3222 -50 529 236 52 35 chr11 20608996 20609170 -130174383 + L2 LINE L2 3118 3294 -19 329 257 37 37 chr11 20609492 20609601 -130173952 + MIR SINE MIR 39 147 -61 321 89 0 0 chr11 20610719 20610764 -130172789 + (A)n Simple_repeat Simple_repeat 1 45 0 2099 113 58 0 chr11 20610810 20611101 -130172452 - AluSx SINE Alu -4 308 1 219 222 0 48 chr11 20612173 20612236 -130171317 + GA-rich Low_complexity Low_complexity 4 63 0 24 0 0 0 chr11 20613150 20613174 -130170379 + AT_rich Low_complexity Low_complexity 1 24 0 1943 130 0 34 chr11 20614329 20614652 -130168901 - AluSx SINE Alu 0 312 1 295 261 222 68 chr11 20615206 20615339 -130168214 - MIR SINE MIR -48 214 46 2014 123 7 0 chr11 20615339 20615639 -130167914 + AluSx SINE Alu 1 302 -10 295 261 222 68 chr11 20615639 20615681 -130167872 - MIR SINE MIR -216 46 12 250 180 90 130 chr11 20615692 20615792 -130167761 + MIR3 SINE MIR 98 193 -15 412 321 27 43 chr11 20616000 20616184 -130167369 - MIR SINE MIR -62 200 20 237 309 118 55 chr11 20616409 20616797 -130166756 - L2 LINE L2 -210 3062 2623 553 295 62 21 chr11 20616797 20617122 -130166431 - MER102b DNA MER1_type -2 339 2 237 309 118 55 chr11 20617122 20617311 -130166242 - L2 LINE L2 -649 2623 2447 286 244 24 24 chr11 20618386 20618468 -130165085 + CT-rich Low_complexity Low_complexity 4 85 0 28 0 0 0 chr11 20618737 20618765 -130164788 + AT_rich Low_complexity Low_complexity 1 28 0 300 294 207 17 chr11 20620177 20620476 -130163077 - L3 LINE CR1 -69 1508 1153 391 279 196 36 chr11 20620857 20621076 -130162477 - MIR SINE MIR -7 255 2 1694 155 14 7 chr11 20621188 20621478 -130162075 + AluJo SINE Alu 3 294 -18 21 36 0 0 chr11 20622318 20622346 -130161207 + AT_rich Low_complexity Low_complexity 1 28 0 2060 95 0 11 chr11 20622399 20622707 -130160846 + AluSx SINE Alu 1 305 0 641 103 5 82 chr11 20622890 20623084 -130160469 + (TTTCC)n Simple_repeat Simple_repeat 2 180 0 536 189 5 43 chr11 20623076 20623261 -130160292 + CT-rich Low_complexity Low_complexity 3 180 0 * 356 125 0 38 chr11 20623272 20623352 -130160201 + (TTTC)n Simple_repeat Simple_repeat 1 77 0 647 85 40 57 chr11 20623353 20623530 -130160023 + CT-rich Low_complexity Low_complexity 5 178 0 357 126 0 35 chr11 20623633 20623720 -130159833 + (TTTC)n Simple_repeat Simple_repeat 1 84 0 314 131 49 16 chr11 20623720 20623781 -130159772 + CT-rich Low_complexity Low_complexity 5 67 0 940 219 131 8 chr11 20623781 20624018 -130159535 - AluSg SINE Alu -44 266 1 553 335 27 0 chr11 20624066 20624254 -130159299 - MIR SINE MIR -16 246 54 297 315 102 0 chr11 20624626 20624734 -130158819 - L2 LINE L2 0 3272 3154 1961 98 0 32 chr11 20626453 20626738 -130156815 - AluSc SINE Alu -13 296 21 705 305 119 40 chr11 20627767 20628239 -130155314 + L2 LINE L2 2804 3312 -1 282 315 37 9 chr11 20628259 20628367 -130155186 + MIR3 SINE MIR 93 203 -5 248 287 75 21 chr11 20628434 20628528 -130155025 + MIR3 SINE MIR 96 194 -14 22 0 0 0 chr11 20628621 20628643 -130154910 + AT_rich Low_complexity Low_complexity 1 22 0 750 251 6 12 chr11 20628653 20628824 -130154729 - MIR SINE MIR -29 233 64 3906 128 63 3 chr11 20629051 20629667 -130153886 - MER39B LTR ERV1 0 653 1 185 309 0 18 chr11 20630330 20630385 -130153168 + MIR3 SINE MIR 141 194 -14 255 278 19 65 chr11 20630614 20630722 -130152831 + MIR SINE MIR 19 121 -87 187 219 94 16 chr11 20631256 20631320 -130152233 - MIR SINE MIR -16 246 178 252 315 87 36 chr11 20631587 20631863 -130151690 + L2 LINE L2 2688 2977 -337 235 256 146 12 chr11 20632080 20632162 -130151391 + MIR SINE MIR 20 112 -150 216 0 0 0 chr11 20632233 20632257 -130151296 + (TG)n Simple_repeat Simple_repeat 2 25 0 1366 149 0 0 chr11 20632788 20632996 -130150557 + MER2 DNA MER2_type 2 209 -136 366 222 0 0 chr11 20633203 20633293 -130150260 + (TG)n Simple_repeat Simple_repeat 2 91 0 252 89 0 0 chr11 20633293 20633338 -130150215 + LTR66 LTR ERVL 394 438 -172 367 240 16 74 chr11 20633392 20633499 -130150054 + L2 LINE L2 3197 3298 -15 1406 199 61 0 chr11 20633499 20633776 -130149777 + AluJb SINE Alu 1 294 -18 367 240 16 74 chr11 20633776 20633789 -130149764 + L2 LINE L2 3298 3310 -3 2704 243 34 64 chr11 20634581 20634732 -130148821 - MER21B LTR ERV1 -69 794 640 321 26 0 0 chr11 20634732 20634770 -130148783 + (CA)n Simple_repeat Simple_repeat 2 39 0 192 40 0 0 chr11 20634771 20634796 -130148757 + (TC)n Simple_repeat Simple_repeat 1 25 0 2704 243 34 64 chr11 20634796 20635460 -130148093 - MER21B LTR ERV1 -222 641 1 199 323 91 0 chr11 20635522 20635621 -130147932 - MIR SINE MIR -85 123 16 305 260 271 33 chr11 20636870 20637051 -130146502 + MIR SINE MIR 20 243 -19 357 258 101 44 chr11 20637804 20637963 -130145590 + MIR SINE MIR 81 248 -14 1884 137 7 3 chr11 20638964 20639287 -130144266 - AluSx SINE Alu 0 324 1 859 154 0 0 chr11 20639488 20639624 -130143929 - FLAM_C SINE Alu -7 136 1 201 304 190 13 chr11 20639968 20640126 -130143427 + MIR SINE MIR 34 219 -43 1467 374 64 10 chr11 20640286 20640679 -130142874 - MLT2D LTR ERVL 0 414 1 633 327 44 8 chr11 20641399 20641647 -130141906 - MIR SINE MIR -1 261 5 180 242 30 76 chr11 20642095 20642161 -130141392 + L2 LINE L2 2764 2826 -488 555 261 51 97 chr11 20642676 20642748 -130140805 - MIR SINE MIR -5 257 183 1786 163 0 29 chr11 20642748 20643055 -130140498 - AluJo SINE Alu -14 298 1 2300 91 3 0 chr11 20643064 20643373 -130140180 - AluSp SINE Alu -3 310 1 555 261 51 97 chr11 20643373 20643547 -130140006 - MIR SINE MIR -87 175 13 214 342 176 28 chr11 20643577 20643940 -130139613 + L2 LINE L2 2341 2757 -557 1920 238 105 7 chr11 20643961 20644531 -130139022 - MLT1G LTR MaLR 0 590 1 406 280 28 0 chr11 20644576 20644683 -130138870 + L2 LINE L2 3178 3287 -26 548 266 121 14 chr11 20645249 20645456 -130138097 - MIR SINE MIR -14 248 20 482 336 156 43 chr11 20645518 20646057 -130137496 + L3 LINE CR1 966 1565 -12 181 204 41 20 chr11 20646263 20646312 -130137241 + MIR3 SINE MIR 107 156 -52 1977 78 3 75 chr11 20646444 20646773 -130136780 - AluSq SINE Alu 0 307 1 1925 151 0 56 chr11 20647744 20647914 -130135639 - MER44D DNA MER2_type -1882 609 431 2376 76 0 13 chr11 20647914 20648229 -130135324 + AluY SINE Alu 1 311 0 1925 151 0 56 chr11 20648229 20648415 -130135138 - MER44D DNA MER2_type -2060 431 3 1929 126 0 0 chr11 20648426 20648703 -130134850 - AluSx SINE Alu -15 297 21 1225 290 145 66 chr11 20649161 20650465 -130133088 - L2 LINE L2 -202 3070 1603 449 256 80 82 chr11 20651094 20651455 -130132098 + L2 LINE L2 2724 3079 -234 358 336 55 0 chr11 20651615 20651743 -130131810 + MIR3 SINE MIR 71 205 -3 2163 99 10 0 chr11 20652549 20652841 -130130712 - AluSx SINE Alu -17 295 1 388 316 66 15 chr11 20653585 20653721 -130129832 + L2 LINE L2 3127 3269 -3 181 323 31 0 chr11 20655059 20655124 -130128429 + MER5A DNA MER1_type 7 73 -116 1174 166 92 56 chr11 20655125 20655344 -130128209 + L1MC2 LINE L1 5996 6233 -111 1384 173 90 0 chr11 20655344 20655610 -130127943 + AluJo SINE Alu 3 292 -20 1174 166 92 56 chr11 20655610 20655727 -130127826 + L1MC2 LINE L1 6233 6344 0 201 325 12 25 chr11 20655767 20655847 -130127706 + MER5A DNA MER1_type 111 189 0 350 278 238 7 chr11 20657001 20657152 -130126401 - MER5A DNA MER1_type 0 189 4 2118 96 0 60 chr11 20658630 20658962 -130124591 - AluSq SINE Alu 0 313 2 198 0 0 0 chr11 20659489 20659511 -130124042 + (T)n Simple_repeat Simple_repeat 1 22 0 439 360 103 26 chr11 20660253 20660603 -130122950 + L2 LINE L2 2869 3245 -27 399 233 75 82 chr11 20660727 20660873 -130122680 + MIR SINE MIR 103 247 -15 206 268 61 37 chr11 20660887 20660969 -130122584 - MIR SINE MIR -171 91 8 187 283 51 94 chr11 20661240 20661378 -130122175 + MIR3 SINE MIR 15 146 -62 775 167 0 0 chr11 20661610 20661724 -130121829 + AluJb SINE Alu 183 296 -16 210 274 206 0 chr11 20661726 20661799 -130121754 - MIR SINE MIR -77 131 44 1710 164 30 7 chr11 20661808 20662107 -130121446 - AluJb SINE Alu -6 306 1 2018 96 39 0 chr11 20662943 20663224 -130120329 + AluSx SINE Alu 1 292 -20 329 375 99 0 chr11 20664000 20664152 -130119401 + MIR3 SINE MIR 21 187 -21 464 254 127 97 chr11 20664559 20664929 -130118624 + L2 LINE L2 2842 3222 -50 195 282 82 24 chr11 20664925 20665010 -130118543 - MIR SINE MIR -127 135 46 * 370 252 122 41 chr11 20666414 20666537 -130117016 - L2 LINE L2 -1 3271 3139 232 108 0 0 chr11 20666598 20666635 -130116918 - L1MB7 LINE L1 -16 6168 6132 1128 98 6 38 chr11 20666636 20666859 -130116694 - AluSg/x SINE Alu 0 312 134 345 158 0 0 chr11 20666859 20666916 -130116637 - L1MB7 LINE L1 -44 6140 6084 387 252 293 0 chr11 20669266 20669389 -130114164 + MIR3 SINE MIR 49 207 -1 214 229 43 29 chr11 20669742 20669812 -130113741 + MIR SINE MIR 22 92 -116 2160 103 3 7 chr11 20669973 20670296 -130113257 - AluSx SINE Alu 0 312 3 2000 115 0 30 chr11 20670762 20671066 -130112487 + AluSx SINE Alu 3 297 -15 265 177 65 0 chr11 20671364 20671426 -130112127 - MER113 DNA MER1_type? -1 520 455 34 24 0 0 chr11 20671437 20671478 -130112075 + AT_rich Low_complexity Low_complexity 1 41 0 356 248 29 0 chr11 20671543 20671648 -130111905 - MER113 DNA MER1_type? -413 108 1 1702 223 71 21 chr11 20673514 20673995 -130109558 + MLT1D LTR MaLR 1 505 0 700 261 60 23 chr11 20674051 20674266 -130109287 - MIR SINE MIR 0 262 40 577 224 201 0 chr11 20675134 20675308 -130108245 - MER3 DNA MER1_type 0 209 1 389 284 21 0 chr11 20675400 20675495 -130108058 + MIR SINE MIR 96 192 -70 1834 145 13 13 chr11 20675543 20675847 -130107706 - AluSx SINE Alu -8 304 1 2056 112 3 20 chr11 20677006 20677311 -130106242 - AluSx SINE Alu -8 304 5 1318 226 139 6 chr11 20677595 20677954 -130105599 - MLT1I LTR MaLR 0 409 3 306 341 133 7 chr11 20678295 20678430 -130105123 - L2 LINE L2 -19 3253 3102 2259 85 3 13 chr11 20678686 20679002 -130104551 + AluSq SINE Alu 1 313 0 234 296 37 0 chr11 20679247 20679328 -130104225 - MIR3 SINE MIR -5 203 120 495 263 125 0 chr11 20679474 20679626 -130103927 + MIR3 SINE MIR 14 184 -24 401 267 10 10 chr11 20680509 20680610 -130102943 - MIR SINE MIR -69 139 39 701 310 52 4 chr11 20681914 20682143 -130101410 - MIR SINE MIR 0 262 23 201 250 185 28 chr11 20682436 20682544 -130101009 + L2 LINE L2 3140 3264 -8 237 210 0 0 chr11 20682675 20682737 -130100816 + CT-rich Low_complexity Low_complexity 5 66 0 748 312 84 29 chr11 20682754 20683455 -130100098 + L2 LINE L2 2582 3313 0 2157 89 3 7 chr11 20683801 20684092 -130099461 - AluSq SINE Alu -23 290 1 283 247 34 34 chr11 20684188 20684277 -130099276 + MIR SINE MIR 162 250 -12 230 188 16 78 chr11 20684312 20684376 -130099177 - MIR SINE MIR -121 141 82 394 325 99 59 chr11 20685295 20685886 -130097667 + L2 LINE L2 2632 3267 -5 259 232 49 73 chr11 20685946 20686028 -130097525 + L2 LINE L2 3217 3296 -17 2055 52 0 0 chr11 20686038 20686286 -130097267 + L1PA5 LINE L1 5905 6152 -2 1519 223 21 12 chr11 20686333 20686669 -130096884 - MLT1A1 LTR MaLR 0 365 27 233 264 25 92 chr11 20686909 20687072 -130096481 - L2 LINE L2 -218 3054 2903 321 349 31 42 chr11 20687716 20687908 -130095645 - MIR SINE MIR -62 200 11 184 225 0 0 chr11 20688761 20688801 -130094752 + MIR SINE MIR 108 147 -115 388 260 40 30 chr11 20689271 20689371 -130094182 + MIR SINE MIR 2 102 -160 273 374 8 16 chr11 20689495 20689618 -130093935 + L2 LINE L2 3137 3258 -14 1937 137 17 0 chr11 20689674 20689966 -130093587 - AluSx SINE Alu -15 297 1 186 43 0 0 chr11 20689978 20690001 -130093552 + (A)n Simple_repeat Simple_repeat 1 23 0 380 271 85 45 chr11 20690065 20690242 -130093311 - MIR SINE MIR -6 256 73 359 222 131 20 chr11 20690289 20690388 -130093165 - MIR SINE MIR -30 232 123 236 171 0 0 chr11 20690390 20690425 -130093128 + Alu SINE Alu 2 36 -267 336 274 52 65 chr11 20691293 20691446 -130092107 - L1ME4a LINE L1 -27 6094 5944 843 264 77 17 chr11 20691463 20691698 -130091855 - MIR SINE MIR -10 252 4 451 316 44 18 chr11 20691719 20691944 -130091609 - L1ME4a LINE L1 -223 5898 5668 403 133 0 72 chr11 20692299 20692382 -130091171 + MADE1 DNA Mariner 4 80 0 2123 110 3 0 chr11 20692420 20692721 -130090832 + AluSx SINE Alu 1 302 -10 549 240 176 10 chr11 20692866 20693070 -130090483 + MIR SINE MIR 13 250 -12 444 258 77 32 chr11 20693090 20693245 -130090308 + MIR SINE MIR 20 181 -81 196 393 0 0 chr11 20693656 20693745 -130089808 + MIR SINE MIR 161 249 -13 280 312 70 32 chr11 20693845 20694031 -130089522 - MIR3 SINE MIR -5 203 11 1300 170 9 136 chr11 20694497 20694646 -130088907 + AluJo SINE Alu 1 87 -215 1978 137 0 0 chr11 20694646 20694945 -130088608 + AluSx SINE Alu 1 299 -13 1300 170 9 136 chr11 20694945 20695125 -130088428 + AluJo SINE Alu 87 288 -14 277 231 97 107 chr11 20695531 20695747 -130087806 + L2 LINE L2 3078 3291 -22 391 324 76 7 chr11 20695983 20696128 -130087425 + MIR SINE MIR 50 204 -58 1757 149 9 40 chr11 20696741 20697063 -130086490 + AluSx SINE Alu 1 312 0 585 271 100 78 chr11 20697254 20697715 -130085838 + L2 LINE L2 2836 3306 -7 2266 99 0 0 chr11 20698100 20698402 -130085151 + AluSx SINE Alu 2 303 -9 252 171 0 0 chr11 20698443 20698484 -130085069 + Charlie4 DNA MER1_type 9 49 -1912 253 227 0 76 chr11 20698829 20698895 -130084658 + L2 LINE L2 3253 3313 0 324 0 0 0 chr11 20701257 20701293 -130082260 + (TG)n Simple_repeat Simple_repeat 2 37 0 442 245 105 19 chr11 20701417 20701627 -130081926 - MIR SINE MIR -6 256 18 522 289 60 60 chr11 20702614 20702863 -130080690 + MIR SINE MIR 14 262 0 2311 85 0 22 chr11 20703849 20704167 -130079386 - AluY SINE Alu 0 311 1 578 280 140 10 chr11 20704311 20704504 -130079049 + MIR SINE MIR 45 262 0 282 264 23 0 chr11 20704513 20704600 -130078953 + MIR SINE MIR 174 262 0 192 204 20 41 chr11 20706284 20706333 -130077220 + MIR SINE MIR 194 241 -21 377 242 75 17 chr11 20706442 20706562 -130076991 - MER102b DNA MER1_type 0 341 215 370 335 27 27 chr11 20706723 20706908 -130076645 - MIR3 SINE MIR -4 204 20 372 261 94 29 chr11 20707113 20707251 -130076302 + L2 LINE L2 3126 3272 0 555 266 94 26 chr11 20709074 20709266 -130074287 - MLT1K LTR MaLR -57 531 327 252 0 0 0 chr11 20709293 20709321 -130074232 + (TG)n Simple_repeat Simple_repeat 1 28 0 355 177 71 71 chr11 20709347 20709460 -130074093 + MER103 DNA DNA 8 120 -46 526 330 68 34 chr11 20710620 20710856 -130072697 + MIR SINE MIR 2 245 -17 380 324 20 34 chr11 20711665 20711825 -130071728 + MIR SINE MIR 16 170 -66 2287 99 0 6 chr11 20711926 20712240 -130071313 - AluSx SINE Alu 0 312 1 571 288 148 34 chr11 20712324 20712840 -130070713 - L2 LINE L2 -230 3083 2485 271 273 26 26 chr11 20713870 20713947 -130069606 + MIR SINE MIR 65 141 -67 584 267 70 52 chr11 20714122 20714452 -130069101 + MER102b DNA MER1_type 5 340 -1 341 300 0 18 chr11 20715158 20715268 -130068285 + L1ME3 LINE L1 6030 6137 -25 492 255 30 0 chr11 20716127 20716239 -130067314 - MIR3 SINE MIR -35 173 58 186 43 0 0 chr11 20716774 20716797 -130066756 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1980 117 33 0 chr11 20716800 20717073 -130066480 - AluSx SINE Alu -30 282 1 247 257 99 10 chr11 20719009 20719110 -130064443 + L1M4 LINE L1 3743 3852 -2294 23 54 0 0 chr11 20719539 20719576 -130063977 + AT_rich Low_complexity Low_complexity 1 37 0 508 118 26 0 chr11 20720680 20720756 -130062797 - L1PA7 LINE L1 -3 6151 6074 740 125 230 3 chr11 20720856 20721016 -130062537 - Charlie3 DNA MER1_type -2443 267 25 1795 134 10 14 chr11 20721657 20721949 -130061604 + AluY SINE Alu 1 291 -20 26 0 0 0 chr11 20723457 20723483 -130060070 + AT_rich Low_complexity Low_complexity 1 26 0 530 264 57 0 chr11 20723743 20723849 -130059704 - FAM SINE Alu -68 117 6 26 0 0 0 chr11 20724299 20724325 -130059228 + AT_rich Low_complexity Low_complexity 1 26 0 747 222 156 26 chr11 20724403 20724705 -130058848 + Charlie7 DNA MER1_type 320 660 -1952 279 259 93 54 chr11 20724741 20725019 -130058534 + Charlie7 DNA MER1_type 2207 2495 -117 31 68 0 0 chr11 20727920 20727979 -130055574 + AT_rich Low_complexity Low_complexity 1 59 0 3611 165 7 8 chr11 20728207 20728801 -130054752 + L1PA15 LINE L1 5571 6163 -2 23 0 0 0 chr11 20728913 20728936 -130054617 + AT_rich Low_complexity Low_complexity 1 23 0 599 314 66 5 chr11 20729751 20730014 -130053539 + L1MC/D LINE L1 5405 5683 -651 22 35 0 0 chr11 20730700 20730729 -130052824 + AT_rich Low_complexity Low_complexity 1 29 0 298 204 0 0 chr11 20730981 20731030 -130052523 - Tigger3(Golem) DNA MER2_type -1 3028 2980 1973 150 10 0 chr11 20731684 20731978 -130051575 - AluSx SINE Alu -15 297 1 279 292 23 39 chr11 20732110 20732240 -130051313 - MIR SINE MIR -13 249 122 1449 195 40 14 chr11 20732347 20732644 -130050909 - AluSx SINE Alu -7 305 1 25 0 0 0 chr11 20732644 20732669 -130050884 + AT_rich Low_complexity Low_complexity 1 25 0 1278 234 65 15 chr11 20732710 20733112 -130050441 + L1MCc LINE L1 50 471 -5952 1892 251 82 10 chr11 20733673 20734354 -130049199 + L1M4 LINE L1 3085 3814 -2332 2195 99 0 60 chr11 20734792 20735124 -130048429 + AluSq SINE Alu 2 313 0 262 231 30 101 chr11 20736023 20736072 -130047481 - L1ME LINE L1 -241 5880 5829 2326 101 0 9 chr11 20736072 20736388 -130047165 - AluSq SINE Alu 0 313 1 262 231 30 101 chr11 20736388 20736507 -130047046 - L1ME LINE L1 -292 5829 5724 2476 60 0 29 chr11 20736508 20736822 -130046731 - AluY SINE Alu 0 311 7 381 254 151 8 chr11 20737379 20737505 -130046048 + MIR SINE MIR 47 190 -72 349 299 39 16 chr11 20737647 20737774 -130045779 - MIR SINE MIR -117 145 16 22 35 0 0 chr11 20738037 20738066 -130045487 + AT_rich Low_complexity Low_complexity 1 29 0 4318 164 29 10 chr11 20739047 20739840 -130043713 - L1PA16 LINE L1 -2 6164 5357 454 313 70 51 chr11 20740764 20741020 -130042533 - L3 LINE CR1 -115 1462 1202 252 0 0 0 chr11 20741754 20741782 -130041771 + (TG)n Simple_repeat Simple_repeat 1 28 0 1647 161 20 43 chr11 20746408 20746712 -130036841 + AluJo SINE Alu 1 297 -15 470 290 108 34 chr11 20746802 20747071 -130036482 - L2 LINE L2 -44 3269 2981 714 253 111 18 chr11 20747081 20747457 -130036096 - MLT1J2 LTR MaLR -11 439 2 633 270 74 74 chr11 20747775 20748138 -130035415 + L2 LINE L2 2871 3233 -80 812 254 208 28 chr11 20748182 20748717 -130034836 - L2 LINE L2 -751 2563 1933 449 291 64 49 chr11 20749221 20749424 -130034129 + MIR SINE MIR 9 214 -48 1886 112 40 30 chr11 20749680 20749976 -130033577 - AluSq SINE Alu -14 299 1 1645 82 0 10 chr11 20751387 20751593 -130031960 - AluSg SINE Alu -105 205 2 417 256 196 30 chr11 20751593 20751792 -130031761 - MIR SINE MIR -3 259 28 21 71 0 0 chr11 20753832 20753874 -130029679 + AT_rich Low_complexity Low_complexity 1 42 0 1866 171 20 0 chr11 20753906 20754211 -130029342 + AluJb SINE Alu 1 311 -1 214 295 50 72 chr11 20755099 20755238 -130028315 - L2 LINE L2 0 3272 3137 442 309 48 106 chr11 20755520 20755918 -130027635 - L2 LINE L2 -3 3269 2895 * 477 198 69 26 chr11 20755916 20756032 -130027521 - L2 LINE L2 -3 3310 3190 848 229 55 28 chr11 20756176 20756429 -130027124 - MIR SINE MIR -1 261 2 351 290 37 43 chr11 20757085 20757247 -130026306 + MIR SINE MIR 20 180 -82 308 228 182 27 chr11 20757551 20757712 -130025841 - MIR SINE MIR -34 228 31 232 194 0 28 chr11 20758182 20758254 -130025299 + GA-rich Low_complexity Low_complexity 1 70 0 203 317 65 27 chr11 20758334 20758486 -130025067 - MIR SINE MIR -37 171 18 2186 136 0 3 chr11 20759420 20759729 -130023824 + AluSx SINE Alu 1 308 -4 303 319 262 0 chr11 20759757 20759948 -130023605 + MIR SINE MIR 9 249 -13 745 51 20 0 chr11 20760798 20760896 -130022657 - L1PB2 LINE L1 -2 6149 6050 217 150 0 25 chr11 20762436 20762476 -130021077 + (GGAA)n Simple_repeat Simple_repeat 2 40 0 789 260 18 0 chr11 20763217 20763386 -130020167 + MIR SINE MIR 35 206 -56 509 280 37 47 chr11 20765169 20765383 -130018170 + MIR SINE MIR 51 262 0 238 275 29 0 chr11 20765739 20765808 -130017745 + MIR SINE MIR 45 115 -147 480 266 57 38 chr11 20766101 20766265 -130017288 + MIR3 SINE MIR 2 183 -25 244 313 92 95 chr11 20767093 20767397 -130016156 - L2 LINE L2 -158 3114 2812 2157 104 7 0 chr11 20767773 20768071 -130015482 + AluSp SINE Alu 1 300 -13 359 330 127 50 chr11 20768342 20768563 -130014990 + L1ME4a LINE L1 5884 6121 0 461 164 17 121 chr11 20769134 20769171 -130014382 + MIR SINE MIR 87 126 -136 2202 109 0 0 chr11 20769171 20769475 -130014078 - AluSg SINE Alu -3 307 4 461 164 17 121 chr11 20769475 20769553 -130014000 + MIR SINE MIR 126 190 -72 359 275 119 0 chr11 20769568 20769677 -130013876 + L2 LINE L2 3187 3308 -5 2114 106 0 7 chr11 20769859 20770160 -130013393 - AluSx SINE Alu -13 299 1 195 268 56 14 chr11 20770729 20770800 -130012753 - L2 LINE L2 0 3272 3199 342 361 48 36 chr11 20771282 20771448 -130012105 + MIR3 SINE MIR 33 200 -8 1214 213 17 17 chr11 20772422 20772661 -130010892 + MIR SINE MIR 24 262 0 418 262 37 9 chr11 20772661 20772768 -130010785 + L2 LINE L2 3190 3299 -14 296 245 191 0 chr11 20772897 20772991 -130010562 + MIR SINE MIR 83 194 -68 1713 126 4 47 chr11 20773798 20774076 -130009477 - AluSx SINE Alu -46 266 1 297 125 0 62 chr11 20774086 20774150 -130009403 - MER53 DNA DNA -124 65 6 412 293 107 0 chr11 20774797 20774937 -130008616 + MIR SINE MIR 20 174 -88 207 211 0 0 chr11 20775027 20775065 -130008488 + A-rich Low_complexity Low_complexity 2 39 0 207 302 124 70 chr11 20775146 20775388 -130008165 - L2 LINE L2 -3 3269 3015 276 313 159 29 chr11 20775424 20775632 -130007921 - L2 LINE L2 -220 3052 2818 221 266 52 117 chr11 20776481 20776635 -130006918 + MER5A DNA MER1_type 44 187 -2 23412 76 13 11 chr11 20777245 20781227 -130002326 - L1PA7 LINE L1 -3 6151 2151 2258 69 0 69 chr11 20781493 20781827 -130001726 - AluY SINE Alu 0 311 1 233 299 138 46 chr11 20782382 20782556 -130000997 - MIR SINE MIR -71 191 2 280 311 132 9 chr11 20782598 20782704 -130000849 - L2 LINE L2 -6 3266 3148 245 335 0 27 chr11 20786463 20786579 -129996974 + MIR SINE MIR 42 150 -93 238 333 32 11 chr11 20786860 20786953 -129996600 + MIR SINE MIR 118 212 -50 2028 141 0 6 chr11 20787195 20787508 -129996045 - AluSx SINE Alu -1 311 1 388 171 81 81 chr11 20788386 20788497 -129995056 + L1MCa LINE L1 2242 2352 -4074 657 122 50 0 chr11 20788498 20788637 -129994916 + L1MCa LINE L1 2322 2467 -3959 250 214 0 18 chr11 20789586 20789642 -129993911 + L2 LINE L2 3257 3311 -2 427 269 87 0 chr11 20789740 20789889 -129993664 - MER103 DNA DNA -4 162 1 2262 110 0 0 chr11 20792112 20792422 -129991131 - AluSg SINE Alu 0 310 1 217 243 0 81 chr11 20792555 20792629 -129990924 - MIR SINE MIR -78 184 117 260 305 114 15 chr11 20794401 20794532 -129989021 - MIR SINE MIR -111 151 8 781 296 113 10 chr11 20796632 20797021 -129986532 - MLT1K LTR MaLR -16 572 144 22 0 0 0 chr11 20797732 20797754 -129985799 + AT_rich Low_complexity Low_complexity 1 22 0 414 0 0 0 chr11 20798441 20798487 -129985066 + (TG)n Simple_repeat Simple_repeat 2 47 0 195 167 0 0 chr11 20799451 20799493 -129984060 + (TAA)n Simple_repeat Simple_repeat 3 44 0 390 289 38 57 chr11 20799538 20799697 -129983856 - MIR SINE MIR -79 183 28 308 302 56 20 chr11 20799911 20800057 -129983496 - MER5A DNA MER1_type -28 161 3 605 312 44 0 chr11 20800335 20800540 -129983013 + MIR SINE MIR 14 227 -35 620 286 61 9 chr11 20801765 20801978 -129981575 - MIR SINE MIR -16 246 23 451 281 128 71 chr11 20802579 20803133 -129980420 + L2 LINE L2 2593 3239 -33 805 282 18 14 chr11 20803151 20803371 -129980182 + MIR SINE MIR 13 233 -29 600 111 0 0 chr11 20804101 20804191 -129979362 + (TA)n Simple_repeat Simple_repeat 2 91 0 306 103 0 0 chr11 20804237 20804276 -129979277 + Alu SINE Alu 1 39 -262 327 248 233 0 chr11 20805265 20805394 -129978159 - MIR SINE MIR -11 251 93 23 0 0 0 chr11 20805596 20805619 -129977934 + AT_rich Low_complexity Low_complexity 1 23 0 289 302 35 0 chr11 20806591 20806677 -129976876 + MIR3 SINE MIR 74 162 -46 209 302 126 38 chr11 20807555 20807714 -129975839 + MIR3 SINE MIR 7 179 -29 370 264 83 0 chr11 20808046 20808167 -129975386 + MIR SINE MIR 108 238 -24 1495 181 10 17 chr11 20808594 20808887 -129974666 + AluJo SINE Alu 1 291 -21 694 226 125 0 chr11 20808987 20809155 -129974398 - MER63A DNA MER1_type -1 209 21 406 302 0 10 chr11 20809176 20809272 -129974281 - MIR SINE MIR -166 96 2 195 368 0 15 chr11 20809690 20809758 -129973795 - L2 LINE L2 -16 3256 3190 2392 51 7 0 chr11 20810230 20810523 -129973030 + AluY SINE Alu 11 305 -6 1259 188 113 4 chr11 20810530 20810796 -129972757 + AluSc SINE Alu 1 295 -14 27 0 0 0 chr11 20811127 20811154 -129972399 + AT_rich Low_complexity Low_complexity 1 27 0 210 240 0 20 chr11 20815218 20815268 -129968285 + CT-rich Low_complexity Low_complexity 4 52 0 353 289 104 22 chr11 20815596 20815731 -129967822 - MER5A DNA MER1_type -35 154 9 216 328 172 23 chr11 20815800 20815974 -129967579 - MIR SINE MIR -13 249 50 1846 141 3 13 chr11 20816457 20816761 -129966792 + AluSx SINE Alu 1 301 -11 654 221 45 19 chr11 20816960 20817114 -129966439 - MLT1E LTR MaLR 0 593 436 1372 265 98 37 chr11 20817164 20817486 -129966067 + L1ME3A LINE L1 4030 4331 -1815 2288 69 3 3 chr11 20817486 20817789 -129965764 + AluY SINE Alu 1 303 -8 1372 265 98 37 chr11 20817789 20818232 -129965321 + L1ME3A LINE L1 4331 4842 -1304 1575 164 3 44 chr11 20818450 20818625 -129964928 - AluJo SINE Alu -4 308 150 2044 119 3 3 chr11 20818625 20818928 -129964625 - AluSx SINE Alu -9 303 1 1575 164 3 44 chr11 20818928 20819070 -129964483 - AluJo SINE Alu -162 150 4 2134 109 0 0 chr11 20819163 20819456 -129964097 + AluSg SINE Alu 1 293 -17 395 287 155 64 chr11 20819530 20819826 -129963727 + LTR16C LTR ERVL 75 397 -94 249 133 107 93 chr11 20819864 20819939 -129963614 + MER96 DNA MER1_type? 98 173 -2 303 226 145 54 chr11 20820015 20820034 -129963519 + L1ME3A LINE L1 5621 5637 -533 971 260 48 54 chr11 20820034 20820426 -129963127 + MLT1B LTR MaLR 1 390 0 303 226 145 54 chr11 20820426 20820812 -129962741 + L1ME3A LINE L1 5637 6071 -99 1774 202 22 14 chr11 20820812 20821174 -129962379 + MLT1A1 LTR MaLR 1 365 0 303 226 145 54 chr11 20821174 20821240 -129962313 + L1ME3A LINE L1 6071 6130 -40 201 204 37 19 chr11 20821422 20821476 -129962077 + MIR SINE MIR 62 116 -92 398 330 94 17 chr11 20821612 20821843 -129961710 + L3 LINE CR1 1306 1554 -23 242 236 139 67 chr11 20821843 20822008 -129961545 + MIR3 SINE MIR 1 177 -31 1986 132 0 0 chr11 20822282 20822571 -129960982 + AluSx SINE Alu 3 291 -21 241 246 49 0 chr11 20822774 20822835 -129960718 - MIR SINE MIR -153 109 46 380 268 25 108 chr11 20823073 20823230 -129960323 + MIR SINE MIR 38 181 -27 3671 136 101 18 chr11 20823230 20823883 -129959670 - MER39 LTR ERV1 0 707 1 1889 175 49 31 chr11 20823951 20824340 -129959213 - MSTD LTR MaLR 0 396 1 219 309 41 10 chr11 20824417 20824514 -129959039 + MIR SINE MIR 30 129 -79 741 181 0 45 chr11 20824777 20824808 -129958745 - AluJo/FRAM SINE Alu -9 303 272 1958 136 0 41 chr11 20824808 20825125 -129958428 + AluSx SINE Alu 1 304 -8 741 181 0 45 chr11 20825125 20825248 -129958305 - AluJo/FRAM SINE Alu -40 272 156 427 152 13 38 chr11 20825273 20825352 -129958201 + MER45A DNA AcHobo 102 178 0 353 277 40 40 chr11 20825366 20825514 -129958039 - MLT1K LTR MaLR -424 164 17 5522 191 51 31 chr11 20825671 20826970 -129956583 + L1M3f LINE L1 1 1289 -4137 1909 142 3 10 chr11 20826970 20827279 -129956274 + AluJb SINE Alu 1 307 -5 5522 191 51 31 chr11 20827279 20827354 -129956199 + L1M3f LINE L1 1289 1361 -4065 423 210 0 0 chr11 20827374 20827455 -129956098 - MIR SINE MIR -32 230 150 940 281 59 32 chr11 20828020 20828615 -129954938 + L1MC4 LINE L1 6362 7058 -835 497 291 67 27 chr11 20828907 20829130 -129954423 + MER102a DNA MER1_type 98 329 -1 407 19 19 0 chr11 20829231 20829283 -129954270 + (TG)n Simple_repeat Simple_repeat 1 53 0 2024 135 0 0 chr11 20829409 20829705 -129953848 + AluSx SINE Alu 1 296 -16 705 283 187 39 chr11 20830025 20830410 -129953143 + MLT1L LTR MaLR 12 453 -162 2275 106 0 0 chr11 20830883 20831195 -129952358 + AluSx SINE Alu 1 312 0 379 290 16 32 chr11 20831295 20831419 -129952134 - MIR SINE MIR -106 156 35 829 263 12 40 chr11 20831798 20832045 -129951508 + MIR SINE MIR 20 259 -3 349 310 10 0 chr11 20832723 20832823 -129950730 + L2 LINE L2 1700 1800 -1514 400 203 0 14 chr11 20832824 20832898 -129950655 + MER112 DNA MER1_type 6 78 -182 307 198 104 38 chr11 20832940 20833046 -129950507 + MER112 DNA MER1_type 60 172 -88 22 0 0 0 chr11 20833049 20833071 -129950482 + AT_rich Low_complexity Low_complexity 1 22 0 365 300 82 21 chr11 20833360 20833593 -129949960 - L1M4 LINE L1 -1095 5051 4805 327 328 76 25 chr11 20833599 20833913 -129949640 + L2 LINE L2 1840 2169 -1145 643 286 86 9 chr11 20834120 20834340 -129949213 + MLT1J LTR MaLR 92 328 -183 603 302 88 73 chr11 20834567 20834951 -129948602 + L2 LINE L2 2467 2856 -458 2356 123 40 0 chr11 20835038 20835387 -129948166 + THE1B LTR MaLR 2 364 0 494 286 208 31 chr11 20835387 20835681 -129947872 + L2 LINE L2 2963 3308 -5 2070 123 3 7 chr11 20835731 20836039 -129947514 + AluSx SINE Alu 2 308 -4 1109 182 19 37 chr11 20836996 20837265 -129946288 - L1MC3 LINE L1 0 7785 7522 264 294 176 20 chr11 20837588 20837741 -129945812 + MIR SINE MIR 54 230 -32 3842 117 8 0 chr11 20837860 20838382 -129945171 - MER1A DNA MER1_type 0 527 2 226 281 129 29 chr11 20838607 20838746 -129944807 + MIR SINE MIR 110 262 0 2882 133 20 7 chr11 20839164 20839621 -129943932 - MER50 LTR ERV1 -271 463 1 301 304 14 34 chr11 20839646 20839794 -129943759 - L2 LINE L2 -1077 2237 2093 9369 201 59 49 chr11 20840061 20840561 -129942992 + Charlie1 DNA MER1_type 2 495 -2266 1864 141 28 75 chr11 20840561 20840716 -129942837 - MER2 DNA MER2_type 0 344 183 1975 119 7 13 chr11 20840716 20841018 -129942535 + AluJb SINE Alu 9 308 -4 1864 141 28 75 chr11 20841018 20841223 -129942330 - MER2 DNA MER2_type -161 183 1 9369 201 59 49 chr11 20841223 20841276 -129942277 + Charlie1 DNA MER1_type 495 546 -2215 2142 115 0 0 chr11 20841276 20841581 -129941972 + AluSc SINE Alu 1 305 -4 9369 201 59 49 chr11 20841581 20841962 -129941591 + Charlie1 DNA MER1_type 546 922 -1839 1904 126 14 3 chr11 20841962 20842255 -129941298 + AluSx SINE Alu 3 298 -14 243 0 0 0 chr11 20842258 20842285 -129941268 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 9369 201 59 49 chr11 20842285 20842998 -129940555 + Charlie1 DNA MER1_type 923 1627 -1134 2022 102 0 3 chr11 20842998 20843329 -129940224 + AluSx SINE Alu 1 330 0 9369 201 59 49 chr11 20843329 20844068 -129939485 + Charlie1 DNA MER1_type 1627 2357 -404 1592 187 10 3 chr11 20844068 20844362 -129939191 + AluJb SINE Alu 1 296 -16 9369 201 59 49 chr11 20844362 20844392 -129939161 + Charlie1 DNA MER1_type 2357 2385 -376 1523 103 3 141 chr11 20844392 20844732 -129938821 - AluSx SINE Alu -19 293 1 9369 201 59 49 chr11 20844732 20844960 -129938593 + Charlie1 DNA MER1_type 2385 2759 -2 268 250 213 9 chr11 20845181 20845289 -129938264 + MIR SINE MIR 77 206 -56 226 182 0 73 chr11 20845409 20845464 -129938089 + MIR SINE MIR 201 251 -11 * 243 88 0 0 chr11 20845432 20845466 -129938087 + L2 LINE L2 3265 3298 -15 201 130 0 43 chr11 20845693 20845711 -129937842 + (A)n Simple_repeat Simple_repeat 1 18 -26 2311 80 0 10 chr11 20845711 20846025 -129937528 + AluY SINE Alu 1 311 0 201 130 0 43 chr11 20846025 20846052 -129937501 + (A)n Simple_repeat Simple_repeat 18 44 0 209 408 48 0 chr11 20846149 20846252 -129937301 - L2 LINE L2 0 3272 3165 2006 121 10 0 chr11 20846360 20846658 -129936895 + AluSx SINE Alu 1 301 -11 194 81 27 0 chr11 20846668 20846705 -129936848 + (CAAA)n Simple_repeat Simple_repeat 4 41 0 2694 146 28 19 chr11 20846900 20847373 -129936180 - L1MB2 LINE L1 -8 6163 5687 603 282 55 6 chr11 20848351 20848532 -129935021 + MIR3 SINE MIR 16 205 -3 204 186 47 0 chr11 20850425 20850468 -129933085 + MIR SINE MIR 101 145 -63 26 30 0 0 chr11 20851085 20851118 -129932435 + AT_rich Low_complexity Low_complexity 1 33 0 345 24 0 0 chr11 20851730 20851772 -129931781 + (TGG)n Simple_repeat Simple_repeat 1 42 0 191 236 69 56 chr11 20855758 20855830 -129927723 + L3 LINE CR1 1370 1442 -135 310 269 0 21 chr11 20855973 20856066 -129927487 + CT-rich Low_complexity Low_complexity 1 91 0 214 182 0 0 chr11 20858126 20858170 -129925383 + T-rich Low_complexity Low_complexity 1 44 0 25 51 0 0 chr11 20858501 20858540 -129925013 + AT_rich Low_complexity Low_complexity 1 39 0 413 200 0 0 chr11 20858540 20858610 -129924943 - FLAM SINE Alu -15 118 49 356 247 41 23 chr11 20858631 20858763 -129924790 + MIR3 SINE MIR 53 193 -15 1552 169 81 112 chr11 20859394 20859466 -129924087 - LTR48 LTR ERV1 -344 443 370 824 134 16 0 chr11 20859466 20859593 -129923960 + FLAM_C SINE Alu 1 129 -4 1552 169 81 112 chr11 20859593 20859753 -129923800 - LTR48 LTR ERV1 -417 370 207 2128 73 50 20 chr11 20859753 20860055 -129923498 - AluY SINE Alu 0 311 1 1552 169 81 112 chr11 20860055 20860278 -129923275 - LTR48 LTR ERV1 -580 207 1 578 263 46 69 chr11 20861040 20861453 -129922100 + LTR33 LTR ERVL 1 452 -69 926 344 90 19 chr11 20861711 20862089 -129921464 - MER115 DNA AcHobo -287 406 2 4196 135 26 3 chr11 20862122 20863316 -129920237 - L1MA6 LINE L1 -408 5892 4676 278 301 21 0 chr11 20863344 20863437 -129920116 + L3 LINE CR1 1191 1285 -292 214 191 64 0 chr11 20863487 20863534 -129920019 + L2 LINE L2 2679 2728 -586 444 237 52 30 chr11 20863539 20863674 -129919879 - L2 LINE L2 -1 3312 3175 200 329 146 18 chr11 20863702 20863866 -129919687 + L2 LINE L2 2852 3036 -236 511 171 26 68 chr11 20863920 20864037 -129919516 + MIR SINE MIR 64 175 -87 1737 155 10 13 chr11 20864173 20864477 -129919076 - AluSx SINE Alu -9 303 1 559 262 0 27 chr11 20864542 20864691 -129918862 - MIR SINE MIR -14 248 104 1652 216 43 26 chr11 20864701 20865237 -129918316 + MLT2F LTR ERVL 1 620 -43 263 26 51 0 chr11 20866293 20866332 -129917221 + (TAGA)n Simple_repeat Simple_repeat 1 41 0 1549 90 36 5 chr11 20866749 20866972 -129916581 - MER30 DNA MER1_type 0 230 1 2253 114 3 3 chr11 20867167 20867473 -129916080 + AluSx SINE Alu 1 306 -6 21 36 0 0 chr11 20867819 20867847 -129915706 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr11 20867885 20867906 -129915647 + AT_rich Low_complexity Low_complexity 1 21 0 267 315 66 45 chr11 20868402 20868683 -129914870 + L2 LINE L2 2765 3071 -201 201 333 30 0 chr11 20868779 20868845 -129914708 + L2 LINE L2 3205 3272 0 * 610 252 69 41 chr11 20868813 20869031 -129914522 - MIR SINE MIR -38 224 1 270 245 146 11 chr11 20869234 20869459 -129914094 + L1ME4a LINE L1 5518 5786 -335 279 236 147 54 chr11 20869467 20869726 -129913827 + L1ME4a LINE L1 5811 6093 -28 1254 151 5 24 chr11 20869951 20870156 -129913397 - AluJo SINE Alu -16 296 96 2446 95 0 0 chr11 20871846 20872151 -129911402 + AluSx SINE Alu 1 305 -7 1972 162 86 0 chr11 20872262 20872633 -129910920 - MER57A LTR ERV1 0 403 1 201 255 21 0 chr11 20872976 20873023 -129910530 - MIR3 SINE MIR -11 197 150 340 47 0 0 chr11 20873215 20873258 -129910295 - tRNA-Cys-TGC tRNA tRNA -32 43 1 4254 74 2 0 chr11 20873451 20874004 -129909549 + MER41A LTR ERV1 1 554 0 281 130 325 0 chr11 20874088 20874165 -129909388 + MER41A-int LTR ERV1 1 102 -5844 5106 203 102 15 chr11 20874174 20875726 -129907827 + MER41A-int LTR ERV1 1 1775 -4171 1593 62 0 0 chr11 20875712 20875921 -129907632 + MER41A-int LTR ERV1 1952 2160 -4103 * 8619 130 50 26 chr11 20875917 20877926 -129905627 + MER41A-int LTR ERV1 2629 3726 -1289 299 186 0 0 chr11 20878027 20878086 -129905467 + Charlie1 DNA MER1_type 2689 2747 -14 246 297 0 0 chr11 20878456 20878520 -129905033 - MIR SINE MIR -79 129 66 309 109 0 0 chr11 20878633 20878679 -129904874 + (CA)n Simple_repeat Simple_repeat 1 46 0 923 43 0 0 chr11 20878688 20878804 -129904749 - L1PA5 LINE L1 -20 6134 6019 220 358 95 16 chr11 20879886 20880076 -129903477 + L2 LINE L2 2289 2493 -821 465 252 24 0 chr11 20880080 20880203 -129903350 + MER94 DNA DNA 3 128 -6 412 338 127 14 chr11 20880289 20880688 -129902865 + L2 LINE L2 2600 3047 -225 242 281 122 12 chr11 20881033 20881115 -129902438 - MER91A DNA MER1_type -86 110 20 210 300 17 0 chr11 20881129 20881189 -129902364 + L2 LINE L2 3209 3269 -3 626 311 172 37 chr11 20882025 20882522 -129901031 - L2 LINE L2 0 3313 2724 352 225 25 108 chr11 20882672 20882792 -129900761 - MER97b DNA MER1_type? -612 441 332 415 204 21 11 chr11 20882916 20883009 -129900544 - MIR SINE MIR -165 97 4 261 98 0 0 chr11 20883217 20883258 -129900295 + (CTA)n Simple_repeat Simple_repeat 3 43 0 348 203 40 0 chr11 20883274 20883348 -129900205 - MIR SINE MIR -16 246 170 1140 250 97 78 chr11 20883556 20884157 -129899396 - MLT1L LTR MaLR -2 613 2 938 254 184 12 chr11 20884284 20884611 -129898942 + MLT1J2 LTR MaLR 6 388 -62 282 294 78 20 chr11 20884745 20884847 -129898706 - L3 LINE CR1 -50 1527 1420 306 283 5 109 chr11 20884880 20885064 -129898489 + MER117 DNA MER1_type 2 166 -31 443 298 30 23 chr11 20885269 20885400 -129898153 - MIR3 SINE MIR -65 143 12 532 206 7 75 chr11 20885461 20885576 -129897977 - MER20 DNA MER1_type -55 164 59 2582 93 13 21 chr11 20885576 20885954 -129897599 + THE1C LTR MaLR 1 375 0 532 206 7 75 chr11 20885954 20885984 -129897569 - MER20 DNA MER1_type -160 59 29 1851 157 10 10 chr11 20886487 20886780 -129896773 - AluJb SINE Alu -19 293 1 7734 103 46 17 chr11 20889682 20890736 -129892817 + MER41A-int LTR ERV1 4682 5777 -169 2352 109 0 3 chr11 20890736 20891049 -129892504 - AluSx SINE Alu 0 312 1 7734 103 46 17 chr11 20891049 20891222 -129892331 + MER41A-int LTR ERV1 5777 5944 -2 3880 104 4 7 chr11 20891222 20891778 -129891775 + MER41A LTR ERV1 1 554 0 2022 120 7 0 chr11 20891933 20892232 -129891321 - AluSx SINE Alu -11 301 1 695 226 87 84 chr11 20894768 20894834 -129888719 + L2 LINE L2 2040 2104 -1210 451 178 30 0 chr11 20894834 20894935 -129888618 - L1MA7 LINE L1 -1 6290 6187 695 226 87 84 chr11 20894935 20895143 -129888410 + L2 LINE L2 2104 2315 -999 992 287 128 24 chr11 20895181 20895641 -129887912 - L2 LINE L2 -416 2898 2391 309 146 36 0 chr11 20896204 20896259 -129887294 - L2 LINE L2 -5 3308 3252 1979 155 39 29 chr11 20896707 20897093 -129886460 + MLT1B LTR MaLR 1 390 0 764 215 41 6 chr11 20897109 20897281 -129886272 - MER5B DNA MER1_type 0 178 1 2362 103 0 0 chr11 20897700 20898001 -129885552 + AluSx SINE Alu 3 303 -9 182 212 293 30 chr11 20898003 20898102 -129885451 + L3 LINE CR1 1431 1555 -22 270 337 11 0 chr11 20898248 20898340 -129885213 + MIR3 SINE MIR 110 202 -6 232 192 19 0 chr11 20899201 20899253 -129884300 - MLT2C1 LTR ERVL -3 551 499 282 206 0 0 chr11 20899263 20899336 -129884217 + (TA)n Simple_repeat Simple_repeat 1 73 0 1717 153 27 67 chr11 20899336 20899708 -129883845 - MLT2C1 LTR ERVL -40 357 1 299 340 10 0 chr11 20899886 20899986 -129883567 - MIR3 SINE MIR -10 198 98 615 276 75 152 chr11 20900638 20902110 -129881443 + L2 LINE L2 1349 2707 -607 624 219 56 22 chr11 20902118 20902296 -129881257 - L1ME3A LINE L1 -11 6159 5976 456 285 53 93 chr11 20902343 20902696 -129880857 + L2 LINE L2 2686 3022 -250 606 134 67 0 chr11 20904046 20904180 -129879373 + (CATAC)n Simple_repeat Simple_repeat 1 143 0 493 234 97 97 chr11 20904290 20904329 -129879224 - MER97c DNA MER1_type? -853 237 199 2159 122 3 0 chr11 20904329 20904624 -129878929 - AluSg SINE Alu -14 296 1 493 234 97 97 chr11 20904624 20904811 -129878742 - MER97c DNA MER1_type? -890 200 11 232 279 41 57 chr11 20904841 20904963 -129878590 - L2 LINE L2 -1103 2211 2092 742 205 195 17 chr11 20905762 20906148 -129877405 + MLT1H LTR MaLR 57 549 0 572 260 64 59 chr11 20907328 20907547 -129876006 + MIR SINE MIR 43 262 0 40 0 0 0 chr11 20907557 20907597 -129875956 + AT_rich Low_complexity Low_complexity 1 40 0 365 245 99 7 chr11 20907717 20907846 -129875707 - MIR SINE MIR -66 142 19 1930 51 0 0 chr11 20907857 20908093 -129875460 - L1PA7 LINE L1 -6 6148 5913 338 370 54 27 chr11 20908201 20908385 -129875168 - MER5A DNA MER1_type 0 189 1 571 273 5 72 chr11 20908546 20908740 -129874813 - L2 LINE L2 -1 3312 3132 4505 194 30 16 chr11 20908752 20910690 -129872863 + L1MB4 LINE L1 4212 6178 -2 26 30 0 0 chr11 20910849 20910882 -129872671 + AT_rich Low_complexity Low_complexity 1 33 0 330 67 0 0 chr11 20911021 20911066 -129872487 + (CA)n Simple_repeat Simple_repeat 1 45 0 225 0 0 0 chr11 20911065 20911090 -129872463 + (TC)n Simple_repeat Simple_repeat 1 25 0 * 253 137 0 0 chr11 20911118 20911169 -129872384 - L1MA3 LINE L1 0 6305 6255 1990 100 40 31 chr11 20911170 20911521 -129872032 + L1MA2 LINE L1 5896 6249 -55 7132 242 17 43 chr11 20911538 20912189 -129871364 - L1 LINE L1 -1809 5756 5089 1878 126 54 0 chr11 20912189 20912466 -129871087 - AluSx SINE Alu -20 292 1 7132 242 17 43 chr11 20912466 20912623 -129870930 - L1 LINE L1 -2476 5089 4929 1902 174 0 0 chr11 20912623 20912927 -129870626 - AluJb SINE Alu -8 304 1 7132 242 17 43 chr11 20912927 20914253 -129869300 - L1 LINE L1 -2636 4929 3677 6680 117 42 2 chr11 20914277 20915384 -129868169 + L1PBa LINE L1 1058 2208 -4655 4201 32 0 0 chr11 20915384 20915878 -129867675 + L1PA5 LINE L1 5653 6146 -8 32 26 0 0 chr11 20915878 20915917 -129867636 + AT_rich Low_complexity Low_complexity 1 39 0 11181 163 58 7 chr11 20915934 20917069 -129866484 - L1 LINE L1 -5233 2332 1256 1942 153 18 24 chr11 20917069 20917408 -129866145 - MER1B DNA MER1_type 0 337 1 11181 163 58 7 chr11 20917408 20918495 -129865058 - L1 LINE L1 -6309 1256 19 2218 188 153 63 chr11 20918688 20919455 -129864098 - L1ME2 LINE L1 -9 6224 5389 2108 219 78 40 chr11 20919461 20920290 -129863263 - L1ME2 LINE L1 -874 5341 4481 1543 252 56 90 chr11 20920407 20921622 -129861931 - L1ME2 LINE L1 -4598 1798 625 1238 174 97 0 chr11 20921668 20921926 -129861627 + MER7A DNA MER2_type 66 346 0 304 363 17 20 chr11 20922011 20922306 -129861247 - L1ME2 LINE L1 -5867 529 236 579 274 25 6 chr11 20922749 20922906 -129860647 - MIR SINE MIR 0 262 103 345 310 0 0 chr11 20922998 20923085 -129860468 + MIR3 SINE MIR 81 167 -41 195 292 136 7 chr11 20923319 20923429 -129860124 + MIR SINE MIR 36 150 -65 1818 125 104 0 chr11 20923980 20924259 -129859294 + AluSg SINE Alu 1 308 -2 2208 104 14 0 chr11 20924481 20924769 -129858784 + AluSx SINE Alu 1 292 -20 25 0 0 0 chr11 20924769 20924794 -129858759 + AT_rich Low_complexity Low_complexity 1 25 0 313 273 69 24 chr11 20929071 20929194 -129854359 + MIR SINE MIR 19 145 -71 231 284 18 0 chr11 20929403 20929512 -129854041 + L1ME4a LINE L1 5995 6105 -16 605 218 13 26 chr11 20930668 20930824 -129852729 - MER103 DNA DNA -12 154 1 358 291 11 78 chr11 20930960 20931065 -129852488 + L3 LINE CR1 672 762 -815 1618 221 70 27 chr11 20931065 20931549 -129852004 - MLT1D LTR MaLR 0 505 1 358 291 11 78 chr11 20931549 20931622 -129851931 + L3 LINE CR1 762 838 -739 189 244 116 23 chr11 20931674 20931760 -129851793 - L2 LINE L2 0 3313 3220 904 220 4 70 chr11 20931906 20932078 -129851475 + MIR SINE MIR 50 205 -57 1700 126 112 4 chr11 20932078 20932347 -129851206 + AluSx SINE Alu 5 302 -10 904 220 4 70 chr11 20932347 20932401 -129851152 + MIR SINE MIR 205 261 -1 457 351 157 19 chr11 20932432 20932757 -129850796 + L3 LINE CR1 1119 1488 -89 195 42 0 0 chr11 20932881 20932905 -129850648 + (TGAA)n Simple_repeat Simple_repeat 2 25 0 209 347 71 25 chr11 20933237 20933476 -129850077 - L2 LINE L2 -339 2975 2726 982 163 98 20 chr11 20933703 20933906 -129849647 - MER20 DNA MER1_type 0 219 1 248 322 112 54 chr11 20934986 20935228 -129848325 + L2 LINE L2 3017 3272 0 293 288 131 42 chr11 20935274 20935460 -129848093 - L1ME4a LINE L1 -22 6099 5931 2144 125 0 0 chr11 20935460 20935755 -129847798 + AluSx SINE Alu 1 295 -17 293 288 131 42 chr11 20935755 20936043 -129847510 - L1ME4a LINE L1 -190 5931 5583 332 241 0 58 chr11 20936263 20936350 -129847203 - MIR SINE MIR -111 151 70 456 225 147 31 chr11 20936706 20936835 -129846718 - MIR3 SINE MIR -12 196 53 362 187 31 31 chr11 20937152 20937251 -129846302 - MER5A DNA MER1_type 0 178 80 34 24 0 0 chr11 20938171 20938212 -129845341 + AT_rich Low_complexity Low_complexity 1 41 0 307 339 33 25 chr11 20939459 20939580 -129843973 - L2 LINE L2 0 3272 3151 1537 242 75 71 chr11 20939938 20940501 -129843052 - MLT1G1 LTR MaLR -30 565 1 204 302 23 12 chr11 20941089 20941175 -129842378 + MIR SINE MIR 176 262 0 1926 146 10 0 chr11 20942016 20942317 -129841236 + AluJb SINE Alu 1 304 -8 612 147 39 32 chr11 20942319 20942475 -129841078 + L1M4 LINE L1 5642 5798 -386 2242 160 28 7 chr11 20942576 20943013 -129840540 + L1MB7 LINE L1 5728 6173 -11 722 180 193 12 chr11 20943069 20943313 -129840240 + LTR50 LTR ERVL 1 288 -507 408 275 80 14 chr11 20943343 20943626 -129839927 + LTR50 LTR ERVL 346 522 -1 2132 80 0 0 chr11 20943700 20943990 -129839563 - AluY SINE Alu 0 310 21 22 56 0 0 chr11 20944102 20944138 -129839415 + AT_rich Low_complexity Low_complexity 1 36 0 515 250 26 6 chr11 20944238 20944394 -129839159 - MER103 DNA DNA -3 163 5 296 277 19 39 chr11 20944587 20944742 -129838811 + L1M4 LINE L1 3886 4037 -2109 2100 166 7 48 chr11 20944911 20945266 -129838287 - L1MB5 LINE L1 -87 6087 5752 2072 129 14 3 chr11 20945266 20945560 -129837993 + AluSx SINE Alu 1 297 -15 2100 166 7 48 chr11 20945560 20945639 -129837914 - L1MB5 LINE L1 -422 5752 5671 302 246 104 52 chr11 20945752 20945886 -129837667 + L1ME4a LINE L1 5969 6109 -12 245 344 106 37 chr11 20945918 20946191 -129837362 - L2 LINE L2 -1490 1824 1533 367 123 0 15 chr11 20946397 20946462 -129837091 - LTR54 LTR ERV1 -4 506 443 946 218 36 26 chr11 20946474 20946813 -129836740 - MER57B LTR ERV1 -80 323 1 286 181 14 14 chr11 20946923 20946995 -129836558 + CT-rich Low_complexity Low_complexity 1 72 0 1887 115 42 0 chr11 20946995 20947256 -129836297 - AluSx SINE Alu -40 272 1 1078 282 93 19 chr11 20947617 20948092 -129835461 - MLT1J LTR MaLR 0 511 2 1698 189 3 13 chr11 20949241 20949543 -129834010 - AluJo SINE Alu -13 299 1 830 284 16 29 chr11 20950032 20950275 -129833278 - MIR SINE MIR -15 247 8 2051 232 78 36 chr11 20950462 20951131 -129832422 + MER20B DNA MER1_type 2 698 -85 304 269 62 48 chr11 20951708 20951853 -129831700 + L2 LINE L2 3167 3313 0 24 32 0 0 chr11 20952135 20952166 -129831387 + AT_rich Low_complexity Low_complexity 1 31 0 282 289 21 10 chr11 20952174 20952271 -129831282 - MIR SINE MIR -31 231 134 251 53 0 26 chr11 20952271 20952309 -129831244 + (TG)n Simple_repeat Simple_repeat 2 38 0 2148 84 4 4 chr11 20952324 20952599 -129830954 - AluSg SINE Alu -15 295 21 219 196 151 74 chr11 20952604 20952712 -129830841 - MIR SINE MIR -66 142 20 923 200 6 17 chr11 20953759 20953939 -129829614 + MER45A DNA AcHobo 1 178 0 273 242 50 40 chr11 20954844 20954943 -129828610 + MIR SINE MIR 53 152 -110 289 269 32 11 chr11 20956952 20957045 -129826508 - MIR SINE MIR -60 202 108 671 186 119 83 chr11 20958004 20958467 -129825086 - LTR48 LTR ERV1 -4 781 90 744 280 40 8 chr11 20958482 20958803 -129824750 + MER57B LTR ERV1 4 310 -93 1104 154 0 6 chr11 20958804 20958979 -129824574 - FAM SINE Alu -1 174 1 264 204 0 0 chr11 20958998 20959052 -129824501 + LTR54 LTR ERV1 427 480 -30 1405 161 16 4 chr11 20959057 20959305 -129824248 - MER57A LTR ERV1 0 403 153 671 174 60 27 chr11 20959305 20959454 -129824099 - MER57A-int LTR ERV1 -1559 5978 5825 286 136 0 0 chr11 20959781 20959825 -129823728 - MER57A-int LTR ERV1 -1716 5821 5778 4652 196 64 65 chr11 20959868 20960691 -129822862 - MER57A-int LTR ERV1 -1494 3442 2620 2200 145 0 3 chr11 20960691 20961002 -129822551 + AluSx SINE Alu 1 310 -2 4652 196 64 65 chr11 20961002 20961849 -129821704 - MER57A-int LTR ERV1 -2316 2620 1841 2023 125 11 11 chr11 20961849 20962136 -129821417 + AluSx SINE Alu 1 287 -25 4652 196 64 65 chr11 20962136 20962271 -129821282 - MER57A-int LTR ERV1 -3095 1841 1707 576 147 25 189 chr11 20962365 20962603 -129820950 - MER57A-int LTR ERV1 -2869 3462 3264 759 180 10 78 chr11 20962655 20962861 -129820692 - MER57A-int LTR ERV1 -3059 3272 3081 2276 194 11 59 chr11 20962914 20963472 -129820081 - MER57A-int LTR ERV1 -6873 664 134 1747 157 50 107 chr11 20963595 20963755 -129819798 - MER57A LTR ERV1 -4 399 231 2118 142 0 0 chr11 20963755 20964058 -129819495 + AluSx SINE Alu 1 303 -9 1747 157 50 107 chr11 20964058 20964318 -129819235 - MER57A LTR ERV1 -172 231 3 397 186 0 0 chr11 20964349 20964419 -129819134 - MER34C LTR ERV1 -510 75 6 2288 116 59 9 chr11 20965086 20965730 -129817823 - L1M1 LINE L1 -684 5621 4952 1353 227 23 17 chr11 20965780 20966133 -129817420 - MER4D LTR ERV1 0 903 549 1616 150 22 0 chr11 20966169 20966443 -129817110 - MER49 LTR ERV1 -643 280 1 264 209 22 99 chr11 20966500 20966591 -129816962 + MIR SINE MIR 108 191 -71 216 235 321 0 chr11 20967495 20967576 -129815977 - L2 LINE L2 -4 3309 3203 205 133 22 22 chr11 20968179 20968224 -129815329 + A-rich Low_complexity Low_complexity 3 47 0 478 196 43 22 chr11 20970190 20970282 -129813271 - AluJo SINE Alu -92 220 127 658 91 0 4 chr11 20970374 20970478 -129813075 - L1PA5 LINE L1 -198 5963 5863 22 0 0 0 chr11 20970490 20970512 -129813041 + AT_rich Low_complexity Low_complexity 1 22 0 1682 118 118 22 chr11 20971419 20971690 -129811863 + AluSq SINE Alu 1 297 -16 207 69 0 0 chr11 20972410 20972439 -129811114 + (CA)n Simple_repeat Simple_repeat 1 29 0 372 241 141 16 chr11 20972478 20972669 -129810884 - MER5C DNA MER1_type -5 319 105 513 240 40 8 chr11 20972673 20972798 -129810755 + FLAM_A SINE Alu 1 129 -4 2734 226 55 25 chr11 20973081 20973877 -129809676 - L1ME1 LINE L1 -33 6133 5314 417 310 117 23 chr11 20974184 20974619 -129808934 - L1ME4a LINE L1 -113 6008 5533 2262 123 0 0 chr11 20974930 20975230 -129808323 - AluSx SINE Alu -12 300 1 271 303 97 0 chr11 20975336 20975531 -129808022 - L1ME4a LINE L1 -1129 5017 4804 424 331 58 84 chr11 20975583 20975928 -129807625 - L1ME4a LINE L1 -1368 4778 4456 2192 115 10 3 chr11 20975928 20976232 -129807321 - AluSx SINE Alu -6 306 1 424 331 58 84 chr11 20976232 20976526 -129807027 - L1ME4a LINE L1 -1690 4456 4156 2395 81 3 0 chr11 20976702 20976999 -129806554 + AluSp SINE Alu 1 298 -15 21 36 0 0 chr11 20977021 20977049 -129806504 + AT_rich Low_complexity Low_complexity 1 28 0 3223 208 57 33 chr11 20977358 20978858 -129804695 - L1ME1 LINE L1 -5 6161 4639 53 69 0 0 chr11 20978873 20978975 -129804578 + AT_rich Low_complexity Low_complexity 1 102 0 4772 229 49 26 chr11 20978981 20980427 -129803126 - L1ME1 LINE L1 -1498 4648 3161 243 0 0 0 chr11 20980427 20980454 -129803099 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 4772 229 49 26 chr11 20980454 20980628 -129802925 - L1ME1 LINE L1 -2985 3161 2992 223 256 167 0 chr11 20980704 20980794 -129802759 - MER5C DNA MER1_type -219 105 1 2036 116 11 0 chr11 20980814 20981090 -129802463 + AluSx SINE Alu 1 279 -33 2033 162 0 0 chr11 20981449 20981757 -129801796 - AluJb SINE Alu -4 308 1 228 321 111 0 chr11 20981818 20981899 -129801654 - MIR SINE MIR -82 126 37 336 48 0 0 chr11 20981979 20982021 -129801532 + (TG)n Simple_repeat Simple_repeat 2 43 0 241 275 0 29 chr11 20983318 20983387 -129800166 - L2 LINE L2 0 3313 3247 236 250 54 36 chr11 20984349 20984461 -129799092 - MLT1J LTR MaLR -14 497 384 309 284 84 0 chr11 20984592 20984687 -129798866 - MLT1J LTR MaLR -339 172 70 410 292 130 7 chr11 20984988 20985142 -129798411 - MIR SINE MIR 0 262 90 275 322 11 0 chr11 20985617 20985704 -129797849 + CT-rich Low_complexity Low_complexity 1 88 0 621 254 98 5 chr11 20986059 20986252 -129797301 - MIR SINE MIR -32 230 20 299 280 73 7 chr11 20986732 20986866 -129796687 + MIR SINE MIR 9 136 -72 812 287 9 9 chr11 20987225 20987441 -129796112 - MIR SINE MIR -17 245 30 297 125 0 0 chr11 20987494 20987550 -129796003 + (T)n Simple_repeat Simple_repeat 1 56 0 838 209 46 98 chr11 20987550 20987945 -129795608 + MLT1H LTR MaLR 73 545 -10 218 301 58 10 chr11 20987961 20988064 -129795489 + MIR SINE MIR 70 177 -85 214 127 36 36 chr11 20988720 20988775 -129794778 + T-rich Low_complexity Low_complexity 2 56 0 613 198 107 113 chr11 20990849 20991167 -129792386 + MER46C DNA MER2_type 14 329 -9 353 345 108 0 chr11 20991383 20991522 -129792031 - MIR SINE MIR 0 262 109 1840 98 0 0 chr11 20992028 20992263 -129791290 + AluSc SINE Alu 71 305 -4 363 333 45 41 chr11 20992286 20992502 -129791051 - MIR SINE MIR -42 220 1 305 311 46 73 chr11 20992522 20992673 -129790880 - L2 LINE L2 -111 3161 3015 298 299 24 31 chr11 20992691 20992773 -129790780 - L2 LINE L2 -5 3308 3226 708 274 29 24 chr11 20992773 20992981 -129790572 + MER63A DNA MER1_type 2 210 0 298 299 24 31 chr11 20992981 20993025 -129790528 - L2 LINE L2 -87 3226 3183 5576 181 48 32 chr11 20993032 20993596 -129789957 + Charlie1a DNA MER1_type 55 608 -2153 2320 82 0 0 chr11 20993596 20993902 -129789651 - AluSg SINE Alu 0 306 1 5576 181 48 32 chr11 20993902 20994715 -129788838 + Charlie1a DNA MER1_type 608 1455 0 198 0 0 0 chr11 20994998 20995020 -129788533 + (ATCTG)n Simple_repeat Simple_repeat 1 22 0 2298 113 0 0 chr11 20995596 20995898 -129787655 + AluSx SINE Alu 1 302 -10 319 309 144 0 chr11 20996471 20996568 -129786985 + L2 LINE L2 3154 3264 -8 186 303 115 57 chr11 20996666 20996788 -129786765 - L2 LINE L2 -5 3308 3180 813 173 0 0 chr11 20997020 20997153 -129786400 + AluSq/x SINE Alu 1 133 -179 1793 183 0 3 chr11 20997158 20997453 -129786100 + AluJb SINE Alu 1 294 -18 32 0 0 0 chr11 20998175 20998207 -129785346 + AT_rich Low_complexity Low_complexity 1 32 0 304 91 0 0 chr11 20998209 20998253 -129785300 - MADE1 DNA Mariner -35 45 2 252 305 9 19 chr11 20999042 20999147 -129784406 - MIR SINE MIR -82 180 77 27 29 0 0 chr11 20999537 20999571 -129783982 + AT_rich Low_complexity Low_complexity 1 34 0 236 294 39 7 chr11 20999782 20999935 -129783618 + L1ME LINE L1 5323 5480 -682 304 324 48 28 chr11 21000032 21000177 -129783376 - MIR3 SINE MIR 0 208 61 195 191 43 21 chr11 21000684 21000731 -129782822 - MIR SINE MIR -57 205 158 405 0 0 0 chr11 21000888 21000933 -129782620 + (TG)n Simple_repeat Simple_repeat 1 45 0 379 346 78 8 chr11 21001835 21002078 -129781475 + L1MDa LINE L1 61 320 -6220 1278 190 36 0 chr11 21002216 21002437 -129781116 + AluJo SINE Alu 1 229 -83 221 0 35 0 chr11 21002438 21002467 -129781086 + (TTCC)n Simple_repeat Simple_repeat 3 32 0 1927 156 17 0 chr11 21002485 21002773 -129780780 - AluSq SINE Alu -17 296 4 803 126 25 6 chr11 21002821 21002980 -129780573 + GA-rich Low_complexity Low_complexity 1 162 0 818 79 39 0 chr11 21003043 21003170 -129780383 - MER65A LTR ERV1 0 445 314 1801 129 79 0 chr11 21003171 21003449 -129780104 - AluSx SINE Alu -11 301 2 6206 41 1 23 chr11 21003472 21003961 -129779592 - L1PA7 LINE L1 0 6154 5656 229 0 54 27 chr11 21003961 21003998 -129779555 + (TTTTA)n Simple_repeat Simple_repeat 2 39 0 2108 100 0 4 chr11 21004003 21004282 -129779271 - AluSg SINE Alu -27 283 6 6206 41 1 23 chr11 21004282 21004613 -129778940 - L1PA7 LINE L1 -502 5652 5346 1836 115 42 16 chr11 21004614 21004927 -129778626 - MER65A LTR ERV1 -124 321 1 2074 100 6 6 chr11 21005844 21006155 -129777398 + L1PA8A LINE L1 5794 6104 -27 195 42 0 0 chr11 21006160 21006184 -129777369 + (TAAAA)n Simple_repeat Simple_repeat 1 24 0 1853 181 95 75 chr11 21006187 21006910 -129776643 + MER31-int LTR ERV1 930 1667 -3269 302 233 78 35 chr11 21006892 21007008 -129776545 + MER31-int LTR ERV1 2294 2414 -2457 * 429 255 7 7 chr11 21007037 21007182 -129776371 + MER31-int LTR ERV1 1679 1823 -3113 202 274 0 0 chr11 21007571 21007622 -129775931 + L2 LINE L2 3263 3313 0 25 0 0 0 chr11 21008037 21008062 -129775491 + AT_rich Low_complexity Low_complexity 1 25 0 412 344 38 0 chr11 21008130 21008318 -129775235 + MIR SINE MIR 9 202 -60 1708 185 6 13 chr11 21008335 21008649 -129774904 + AluJb SINE Alu 1 312 0 272 273 11 0 chr11 21008666 21008754 -129774799 - MLT1L LTR MaLR 0 615 527 500 218 0 35 chr11 21011079 21011253 -129772300 + CT-rich Low_complexity Low_complexity 3 170 0 3327 143 58 16 chr11 21011963 21012587 -129770966 - MER39B LTR ERV1 0 653 4 2441 86 0 0 chr11 21012922 21013225 -129770328 - AluY SINE Alu -8 303 1 225 234 65 26 chr11 21013574 21013651 -129769902 - MER5A DNA MER1_type 0 189 110 191 259 17 17 chr11 21013972 21014030 -129769523 - MIR SINE MIR -82 180 123 258 229 0 0 chr11 21014237 21014307 -129769246 + L1ME2 LINE L1 6095 6164 0 246 62 0 0 chr11 21015242 21015274 -129768279 + (TG)n Simple_repeat Simple_repeat 2 33 0 2323 88 0 16 chr11 21016900 21017206 -129766347 - AluSx SINE Alu -11 301 1 2310 72 0 14 chr11 21017719 21018009 -129765544 - AluY SINE Alu 0 311 26 246 314 144 20 chr11 21018175 21018328 -129765225 - MER5A DNA MER1_type -4 185 14 308 336 0 27 chr11 21018337 21018447 -129765106 - MIR SINE MIR -109 153 47 333 92 92 103 chr11 21019916 21020003 -129763550 + LTR49-int LTR ERV1 1457 1542 -4789 276 211 18 18 chr11 21020005 21020062 -129763491 + MER67B LTR ERV1 146 202 -459 2849 175 74 55 chr11 21020064 21020648 -129762905 + MER31-int LTR ERV1 292 864 -4072 706 200 9 0 chr11 21020648 21020763 -129762790 + FLAM_A SINE Alu 1 116 -17 222 91 0 0 chr11 21020767 21020800 -129762753 + (CA)n Simple_repeat Simple_repeat 2 34 0 2849 175 74 55 chr11 21020800 21020917 -129762636 + MER31-int LTR ERV1 866 928 -4008 22652 142 20 19 chr11 21020924 21024873 -129758680 + L1P3 LINE L1 2 4025 -2436 195 42 0 0 chr11 21024873 21024897 -129758656 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 22652 142 20 19 chr11 21024897 21025921 -129757632 + L1P3 LINE L1 4025 5046 -1415 427 270 109 35 chr11 21026560 21026734 -129756819 - MIR SINE MIR -56 206 20 2271 119 0 3 chr11 21026878 21027189 -129756364 + AluSx SINE Alu 1 310 -2 181 189 27 0 chr11 21027276 21027313 -129756240 + L3 LINE CR1 1537 1574 -3 21 36 0 0 chr11 21028132 21028160 -129755393 + AT_rich Low_complexity Low_complexity 1 28 0 351 305 161 6 chr11 21029134 21029308 -129754245 - MIR SINE MIR -44 218 18 913 232 63 56 chr11 21029541 21029955 -129753598 + L1MC5 LINE L1 7501 7917 -44 428 288 12 44 chr11 21030994 21031154 -129752399 - MIR SINE MIR -73 189 35 470 245 135 12 chr11 21031534 21031697 -129751856 - L2 LINE L2 0 3313 3131 413 271 98 94 chr11 21031895 21032098 -129751455 + MIR SINE MIR 48 251 -11 1105 233 134 65 chr11 21032320 21032645 -129750908 + MER34 LTR ERV1 15 387 -155 1956 128 3 42 chr11 21032645 21032958 -129750595 + AluSx SINE Alu 1 301 -11 1105 233 134 65 chr11 21032958 21033126 -129750427 + MER34 LTR ERV1 387 542 0 1362 191 29 22 chr11 21033270 21033543 -129750010 + MER31-int LTR ERV1 3986 4260 -676 288 225 150 12 chr11 21033543 21033623 -129749930 + LTR37A LTR ERV1 4 94 -332 587 202 54 0 chr11 21033623 21033752 -129749801 + MER31-int LTR ERV1 4334 4469 -467 569 228 78 36 chr11 21033781 21033948 -129749605 + MER34 LTR ERV1 369 542 0 333 340 47 35 chr11 21033975 21034207 -129749346 - MLT1K LTR MaLR -285 303 69 29 47 0 0 chr11 21034314 21034357 -129749196 + AT_rich Low_complexity Low_complexity 1 43 0 552 288 0 0 chr11 21034419 21034537 -129749016 - L2 LINE L2 -8 3305 3188 375 255 166 19 chr11 21035045 21035202 -129748351 - MIR SINE MIR -17 245 66 225 282 64 0 chr11 21035208 21035286 -129748267 + MIR3 SINE MIR 125 207 -1 1553 203 3 19 chr11 21035335 21035651 -129747902 + AluJb SINE Alu 1 311 -1 902 78 9 0 chr11 21035659 21035774 -129747779 + AluSq/x SINE Alu 18 133 -179 2012 107 21 4 chr11 21035777 21036057 -129747496 + AluSx SINE Alu 1 285 -27 726 223 122 5 chr11 21036096 21036284 -129747269 - MIR SINE MIR -41 221 12 245 164 0 18 chr11 21037125 21037180 -129746373 + CT-rich Low_complexity Low_complexity 5 58 0 24 0 0 0 chr11 21037713 21037737 -129745816 + AT_rich Low_complexity Low_complexity 1 24 0 1050 76 8 0 chr11 21037737 21037868 -129745685 + AluSq/x SINE Alu 1 132 -180 297 325 172 7 chr11 21038040 21038191 -129745362 + MER5B DNA MER1_type 1 176 -2 338 353 75 29 chr11 21038238 21038411 -129745142 - MIR SINE MIR -62 200 20 2743 105 21 16 chr11 21038679 21039052 -129744501 - THE1C LTR MaLR 0 375 1 1449 232 168 20 chr11 21039057 21039497 -129744056 + MLT1D LTR MaLR 1 505 0 325 278 56 0 chr11 21040005 21040095 -129743458 - L2 LINE L2 -17 3296 3202 312 238 48 12 chr11 21040137 21040221 -129743332 - MIR SINE MIR -162 100 14 1560 266 61 18 chr11 21040227 21040719 -129742834 - LTR33 LTR ERVL 0 521 9 1253 179 95 8 chr11 21040719 21040981 -129742572 + AluJb SINE Alu 21 305 -7 255 231 47 77 chr11 21040993 21041227 -129742326 + MER113 DNA MER1_type? 1 227 -294 209 324 40 81 chr11 21041277 21041450 -129742103 + L2 LINE L2 2790 2955 -359 21 0 0 0 chr11 21041898 21041919 -129741634 + AT_rich Low_complexity Low_complexity 1 21 0 282 322 122 17 chr11 21042224 21042339 -129741214 + LTR33 LTR ERVL 32 158 -363 230 276 8 0 chr11 21042826 21042903 -129740650 - MIR SINE MIR -63 145 67 227 327 0 0 chr11 21043287 21043339 -129740214 + L2 LINE L2 3211 3262 -10 616 219 118 105 chr11 21043363 21043739 -129739814 - MLT1J LTR MaLR -3 468 123 2340 42 38 3 chr11 21043741 21044080 -129739473 + MER11A LTR ERVK 1 445 -821 229 65 0 0 chr11 21044094 21044140 -129739413 - LTR66 LTR ERVL -171 439 394 564 152 55 0 chr11 21044152 21044317 -129739236 + (TA)n Simple_repeat Simple_repeat 1 174 0 1872 187 29 40 chr11 21044349 21044560 -129738993 + L1ME2 LINE L1 5643 5855 -309 635 169 104 122 chr11 21044560 21044839 -129738714 - ORSL DNA AcHobo 0 275 2 1872 187 29 40 chr11 21044839 21045076 -129738477 + L1ME2 LINE L1 5855 6086 -78 1836 154 50 85 chr11 21046423 21046825 -129736728 - MLT1B LTR MaLR 0 390 3 328 311 5 11 chr11 21046984 21047090 -129736463 + MER5A DNA MER1_type 55 167 -15 1383 184 55 52 chr11 21047566 21047626 -129735927 + MER58B DNA MER1_type 32 90 -2330 2536 55 0 0 chr11 21047626 21047917 -129735636 - AluY SINE Alu -20 291 1 1383 184 55 52 chr11 21047917 21048165 -129735388 + MER58B DNA MER1_type 90 341 0 1766 123 9 93 chr11 21048380 21048704 -129734849 - AluJb SINE Alu -15 297 1 784 155 52 0 chr11 21049094 21049210 -129734343 - FLAM_A SINE Alu -11 122 1 610 196 108 13 chr11 21051083 21051241 -129732312 + L1ME3A LINE L1 5998 6170 0 1678 178 78 24 chr11 21051275 21051645 -129731908 - MLT1D LTR MaLR 0 505 116 517 156 80 13 chr11 21051849 21051954 -129731599 - MLT1D LTR MaLR -414 91 1 348 302 145 0 chr11 21052016 21052175 -129731378 + MIR3 SINE MIR 16 197 -11 25 0 0 0 chr11 21052231 21052256 -129731297 + AT_rich Low_complexity Low_complexity 1 25 0 2070 117 11 0 chr11 21052258 21052539 -129731014 + AluSx SINE Alu 1 284 -28 262 255 133 20 chr11 21052881 21052979 -129730574 - L2 LINE L2 -1 3312 3204 263 241 0 0 chr11 21053044 21053102 -129730451 - Charlie7 DNA MER1_type -97 2515 2458 21 0 0 0 chr11 21053749 21053770 -129729783 + AT_rich Low_complexity Low_complexity 1 21 0 1467 137 164 8 chr11 21054089 21054351 -129729202 - AluSg SINE Alu -7 303 1 810 335 175 19 chr11 21054559 21055182 -129728371 - L3 LINE CR1 -30 1547 828 332 295 184 9 chr11 21056272 21056489 -129727064 + L2 LINE L2 2688 2942 -372 1363 241 110 37 chr11 21056552 21057090 -129726463 + L2 LINE L2 2511 3088 -225 21 36 0 0 chr11 21057423 21057451 -129726102 + AT_rich Low_complexity Low_complexity 1 28 0 372 265 113 32 chr11 21057583 21057819 -129725734 + MIR SINE MIR 14 262 0 210 82 0 61 chr11 21057871 21057920 -129725633 + (TCC)n Simple_repeat Simple_repeat 3 48 0 955 157 60 74 chr11 21058173 21058389 -129725164 + MER20 DNA MER1_type 7 219 0 625 241 59 23 chr11 21058496 21058716 -129724837 - L1ME2 LINE L1 0 6164 5937 1366 206 159 61 chr11 21059076 21059323 -129724230 - MLT1D LTR MaLR 0 505 284 2377 97 7 0 chr11 21059323 21059633 -129723920 - AluSx SINE Alu 0 312 1 1366 206 159 61 chr11 21059633 21059845 -129723708 - MLT1D LTR MaLR -221 284 1 295 265 86 8 chr11 21059962 21060079 -129723474 - MIR SINE MIR -7 255 130 456 249 54 63 chr11 21060081 21060286 -129723267 - L1MC4 LINE L1 -4 8038 7836 316 372 16 8 chr11 21060317 21060446 -129723107 - MIR SINE MIR -113 149 20 547 206 27 68 chr11 21060763 21060909 -129722644 + HAL1 LINE L1 1667 1806 -701 272 216 95 0 chr11 21060988 21061062 -129722491 - MER31A LTR ERV1 -8 477 397 1213 180 111 41 chr11 21061081 21061243 -129722310 - MER31A LTR ERV1 -46 435 286 2401 175 44 7 chr11 21061243 21061654 -129721899 + MSTB LTR MaLR 1 426 0 1213 180 111 41 chr11 21061654 21061865 -129721688 - MER31A LTR ERV1 -195 286 1 1821 148 36 16 chr11 21061949 21062254 -129721299 + AluSx SINE Alu 2 312 0 533 251 38 67 chr11 21062256 21062359 -129721194 + HAL1 LINE L1 1973 2077 -430 2367 88 0 3 chr11 21062359 21062656 -129720897 + AluSx SINE Alu 1 296 -16 533 251 38 67 chr11 21062656 21062791 -129720762 + HAL1 LINE L1 2077 2204 -303 459 0 0 0 chr11 21062965 21063016 -129720537 + (TG)n Simple_repeat Simple_repeat 2 52 0 2086 120 17 7 chr11 21063210 21063511 -129720042 + AluSq SINE Alu 1 304 -9 511 332 50 73 chr11 21063634 21064308 -129719245 + L2 LINE L2 2570 3235 -37 21 0 0 0 chr11 21065726 21065747 -129717806 + AT_rich Low_complexity Low_complexity 1 21 0 2184 114 0 3 chr11 21066262 21066552 -129717001 + AluSx SINE Alu 1 289 -23 696 277 252 8 chr11 21066873 21067270 -129716283 + L2 LINE L2 2820 3313 0 300 250 68 68 chr11 21067288 21067388 -129716165 + MIR SINE MIR 111 213 -49 2071 101 10 23 chr11 21067388 21067694 -129715859 + AluY SINE Alu 1 302 -9 300 250 68 68 chr11 21067694 21067741 -129715812 + MIR SINE MIR 212 258 -4 867 227 126 70 chr11 21067869 21068212 -129715341 + MLT1G1 LTR MaLR 2 399 -156 2145 125 0 0 chr11 21068212 21068507 -129715046 - AluSx SINE Alu -17 295 1 867 227 126 70 chr11 21068507 21068674 -129714879 + MLT1G1 LTR MaLR 399 555 0 464 272 0 10 chr11 21068713 21068816 -129714737 - MIR SINE MIR -98 164 63 1918 147 7 0 chr11 21069431 21069764 -129713789 + AluSx SINE Alu 1 335 0 232 338 59 0 chr11 21069765 21069833 -129713720 - MIR SINE MIR -179 83 12 2708 195 58 4 chr11 21070490 21071023 -129712530 - MER68 LTR ERV1 0 562 1 2684 43 0 0 chr11 21071067 21071368 -129712185 + AluY SINE Alu 1 301 -10 2467 162 27 11 chr11 21071374 21071813 -129711740 + L1MB8 LINE L1 5663 6108 -70 2129 126 0 3 chr11 21071833 21072126 -129711427 + AluSx SINE Alu 1 292 -20 46 33 0 0 chr11 21072129 21072189 -129711364 + AT_rich Low_complexity Low_complexity 1 60 0 1486 204 30 50 chr11 21073185 21073581 -129709972 - MLT1B LTR MaLR 0 390 3 195 100 0 0 chr11 21073624 21073654 -129709899 + (T)n Simple_repeat Simple_repeat 1 30 0 235 314 31 78 chr11 21074032 21074223 -129709330 - MER5A DNA MER1_type 0 189 8 535 213 63 116 chr11 21074531 21074799 -129708754 - MIR SINE MIR 0 262 9 300 219 49 37 chr11 21075840 21075922 -129707631 - L2 LINE L2 0 3313 3231 2276 116 0 0 chr11 21075998 21076301 -129707252 + AluSx SINE Alu 1 303 -9 1125 79 7 0 chr11 21076838 21076978 -129706575 + AluSp SINE Alu 51 191 -122 1980 99 0 0 chr11 21077078 21077331 -129706222 - AluSx SINE Alu -59 253 1 583 231 20 27 chr11 21077332 21077479 -129706074 - MIR SINE MIR -102 160 15 205 226 38 0 chr11 21078972 21079025 -129704528 + MIR3 SINE MIR 151 205 -3 1927 157 7 0 chr11 21080268 21080562 -129702991 + AluSx SINE Alu 1 296 -16 742 135 0 0 chr11 21081096 21081200 -129702353 + AluY SINE Alu 2 105 -206 1941 115 0 0 chr11 21081202 21081463 -129702090 + AluY SINE Alu 37 297 -14 634 105 0 0 chr11 21081643 21081729 -129701824 - AluS SINE Alu -226 87 2 1557 111 5 0 chr11 21083353 21083560 -129699993 + AluY SINE Alu 1 208 -103 322 196 21 41 chr11 21083626 21083723 -129699830 - L1M4 LINE L1 -3643 2503 2409 423 0 0 0 chr11 21134634 21134681 -129648872 + (TA)n Simple_repeat Simple_repeat 1 47 0 329 151 0 0 chr11 21134681 21134734 -129648819 - Tigger1 DNA MER2_type -2365 53 1 1291 182 70 22 chr11 21134734 21135047 -129648506 + MLT1A1 LTR MaLR 38 365 0 1802 245 99 6 chr11 21135051 21135586 -129647967 + L2 LINE L2 2033 2617 -697 917 193 36 5 chr11 21135632 21135824 -129647729 + Charlie1a DNA MER1_type 30 227 -1228 1143 108 0 0 chr11 21135824 21136000 -129647553 - AluSp SINE Alu 0 310 135 692 208 15 8 chr11 21136046 21136196 -129647357 + FLAM_A SINE Alu 1 151 0 2395 106 0 0 chr11 21136202 21136514 -129647039 + AluSx SINE Alu 1 312 0 2574 188 98 19 chr11 21136519 21137353 -129646200 + Charlie1a DNA MER1_type 282 1236 -219 1163 176 21 47 chr11 21137353 21137586 -129645967 + AluJb SINE Alu 1 227 -85 513 301 78 30 chr11 21137960 21138359 -129645194 + L1ME LINE L1 5366 5783 -379 937 176 18 12 chr11 21138402 21138572 -129644981 + AluJo SINE Alu 112 282 -30 229 123 62 92 chr11 21139960 21140025 -129643528 + L1ME2 LINE L1 653 715 -5681 649 270 205 37 chr11 21140088 21140601 -129642952 + L1ME2 LINE L1 874 1299 -5097 2012 151 0 3 chr11 21140601 21140900 -129642653 + AluSx SINE Alu 1 298 -14 649 270 205 37 chr11 21140900 21141474 -129642079 + L1ME2 LINE L1 1299 2144 -4252 1171 253 58 27 chr11 21141609 21142223 -129641330 + L1ME2 LINE L1 5555 6224 -9 300 300 61 61 chr11 21142548 21142728 -129640825 - MIR SINE MIR -73 189 10 2173 116 0 3 chr11 21143767 21144061 -129639492 + AluSx SINE Alu 1 293 -19 24 53 0 0 chr11 21144127 21144165 -129639388 + AT_rich Low_complexity Low_complexity 1 38 0 22 0 0 0 chr11 21144236 21144258 -129639295 + AT_rich Low_complexity Low_complexity 1 22 0 1020 215 18 9 chr11 21146106 21146325 -129637228 + MER58A DNA MER1_type 4 224 0 2246 98 3 0 chr11 21146445 21146741 -129636812 + AluSq SINE Alu 1 297 -16 1843 154 0 3 chr11 21147179 21147471 -129636082 - AluJb SINE Alu -21 291 1 1997 67 0 0 chr11 21147894 21148169 -129635384 + L1PA5 LINE L1 5880 6154 0 307 274 69 20 chr11 21148703 21148805 -129634748 + L2 LINE L2 28 134 -3180 580 298 77 26 chr11 21148805 21149154 -129634399 + L2 LINE L2 253 619 -2695 385 226 0 0 chr11 21149178 21149262 -129634291 - L1ME2 LINE L1 -18 6146 6063 886 223 196 12 chr11 21149264 21149610 -129633943 + L2 LINE L2 609 1018 -2296 503 226 200 5 chr11 21149619 21149814 -129633739 + L2 LINE L2 1600 1832 -1482 1679 188 47 43 chr11 21149817 21150052 -129633501 - L1ME2 LINE L1 -16 6148 5916 1401 176 23 106 chr11 21150052 21150266 -129633287 - MLT1A1 LTR MaLR 0 365 198 1623 140 3 81 chr11 21150266 21150588 -129632965 + AluJo SINE Alu 1 297 -15 1401 176 23 106 chr11 21150588 21150771 -129632782 - MLT1A1 LTR MaLR -167 198 1 1679 188 47 43 chr11 21150771 21151003 -129632550 - L1ME2 LINE L1 -248 5916 5679 668 206 100 0 chr11 21151003 21151163 -129632390 + L2 LINE L2 1832 2007 -1307 972 129 139 21 chr11 21151208 21151402 -129632151 - Tigger1 DNA MER2_type 0 2418 2202 433 145 15 99 chr11 21151503 21151571 -129631982 + Charlie1a DNA MER1_type 1335 1388 -1373 2129 95 7 20 chr11 21151571 21151875 -129631678 - AluSx SINE Alu -12 300 1 433 145 15 99 chr11 21151875 21151937 -129631616 + Charlie1a DNA MER1_type 1388 1454 -1 981 254 152 22 chr11 21151939 21152579 -129630974 + L2 LINE L2 2606 3313 0 2108 138 0 3 chr11 21153217 21153529 -129630024 + AluSx SINE Alu 1 311 -1 25 0 0 0 chr11 21154563 21154588 -129628965 + AT_rich Low_complexity Low_complexity 1 25 0 2068 116 0 3 chr11 21154863 21155174 -129628379 - AluY SINE Alu 0 310 1 240 325 9 44 chr11 21155468 21155582 -129627971 - MER5A DNA MER1_type -35 154 45 1394 236 20 61 chr11 21155715 21156155 -129627398 + MER63B DNA MER1_type 7 428 -8 1958 148 30 0 chr11 21156471 21156774 -129626779 - AluJo SINE Alu 0 312 1 1028 241 27 31 chr11 21156827 21157084 -129626469 + MIR SINE MIR 7 262 0 300 326 20 0 chr11 21157709 21157807 -129625746 + L1ME LINE L1 5322 5421 -2387 2175 126 0 40 chr11 21157843 21158169 -129625384 + AluSq SINE Alu 1 313 0 317 345 198 0 chr11 21158238 21158415 -129625138 + L1ME LINE L1 5490 5701 -420 555 103 0 0 chr11 21158466 21158567 -129624986 - Alu SINE Alu 0 306 206 620 111 0 0 chr11 21158570 21158660 -129624893 + AluJ/FRAM SINE Alu 218 307 -5 302 179 18 0 chr11 21158705 21158761 -129624792 - L2 LINE L2 0 3272 3216 1493 117 5 5 chr11 21158792 21158998 -129624555 - AluSx SINE Alu -105 207 2 422 277 68 68 chr11 21159053 21159273 -129624280 + MLT1H LTR MaLR 101 320 -229 309 26 0 0 chr11 21159306 21159344 -129624209 + (CA)n Simple_repeat Simple_repeat 2 39 0 344 135 14 0 chr11 21159344 21159418 -129624135 + (TA)n Simple_repeat Simple_repeat 2 76 0 271 242 0 0 chr11 21159424 21159486 -129624067 + MLT1H LTR MaLR 506 567 0 381 304 83 4 chr11 21159794 21160104 -129623449 + LTR33A LTR ERVL 147 506 -17 1924 147 34 9 chr11 21160117 21160443 -129623110 - MER1B DNA MER1_type 0 339 6 21 57 0 0 chr11 21161555 21161590 -129621963 + AT_rich Low_complexity Low_complexity 1 35 0 889 177 50 5 chr11 21161606 21161804 -129621749 - L1MA9 LINE L1 -38 7295 7089 848 138 53 13 chr11 21162291 21162443 -129621110 + MIR SINE MIR 90 247 -15 9754 160 54 32 chr11 21163419 21164057 -129619496 - L1MA9 LINE L1 -505 6816 6194 5636 104 21 24 chr11 21164057 21164614 -129618939 - L1PA14 LINE L1 -12 6149 5592 2001 161 3 0 chr11 21164614 21164919 -129618634 - AluSx SINE Alu -6 306 1 5636 104 21 24 chr11 21164919 21166027 -129617526 - L1PA14 LINE L1 -569 5592 4507 9754 160 54 32 chr11 21166027 21166234 -129617319 - L1MA9 LINE L1 -1127 6194 5993 1503 177 0 0 chr11 21166234 21166477 -129617076 - AluJb SINE Alu -45 267 25 9754 160 54 32 chr11 21166477 21166539 -129617014 - L1MA9 LINE L1 -1328 5993 5934 180 0 0 0 chr11 21166539 21166559 -129616994 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 9754 160 54 32 chr11 21166559 21168375 -129615178 - L1MA9 LINE L1 -1387 5934 4038 8211 171 89 50 chr11 21168362 21168587 -129614966 - L1MA9 LINE L1 -5194 1974 1759 * 2535 57 0 0 chr11 21168587 21168888 -129614665 - AluY SINE Alu -10 301 1 8211 171 89 50 chr11 21168888 21170562 -129612991 - L1MA9 LINE L1 -5409 1759 1 227 329 0 0 chr11 21170566 21170645 -129612908 - HsTC2 DNA Tc2 -1817 81 3 336 295 100 26 chr11 21170647 21171217 -129612336 + L1M4 LINE L1 4496 5131 -1015 809 174 7 14 chr11 21171217 21171361 -129612192 + FRAM SINE Alu 9 151 -25 1086 53 0 8 chr11 21171363 21171496 -129612057 + AluY SINE Alu 1 132 -179 239 214 12 12 chr11 21171504 21171588 -129611965 + L1M4 LINE L1 5118 5201 -945 23 92 0 0 chr11 21171672 21171737 -129611816 + AT_rich Low_complexity Low_complexity 1 65 0 181 270 0 0 chr11 21171738 21171775 -129611778 - L2 LINE L2 -15 3257 3221 759 222 18 0 chr11 21171802 21171969 -129611584 - L1M4 LINE L1 -887 5259 5090 327 277 188 0 chr11 21172126 21172238 -129611315 - L1MC4a LINE L1 -990 6818 6686 2356 49 0 7 chr11 21172264 21172599 -129610954 - AluY SINE Alu 0 333 1 2212 112 0 0 chr11 21172781 21173085 -129610468 - AluSq SINE Alu -9 304 1 437 254 16 8 chr11 21173510 21173632 -129609921 - L1MC4a LINE L1 -1881 5927 5805 315 221 189 0 chr11 21173778 21173900 -129609653 - L1MC4a LINE L1 -2054 5754 5610 479 162 0 0 chr11 21173907 21173981 -129609572 + AluJ/FLAM SINE Alu 1 74 -238 418 223 46 54 chr11 21174018 21174148 -129609405 - L1MC4a LINE L1 -2215 5593 5465 364 141 141 0 chr11 21175285 21175356 -129608197 - L2 LINE L2 0 3313 3233 234 159 0 23 chr11 21175370 21175414 -129608139 - L1MC/D LINE L1 -1890 5918 5876 2018 253 134 4 chr11 21175418 21176149 -129607404 - L1MC4a LINE L1 -3138 3008 2183 648 233 67 137 chr11 21176521 21177118 -129606435 - L1ME3A LINE L1 -7 6163 5609 479 270 53 7 chr11 21177590 21177742 -129605811 + L1ME LINE L1 5524 5682 -439 704 181 42 122 chr11 21178225 21178463 -129605090 + MER20 DNA MER1_type 1 219 0 849 289 52 7 chr11 21180793 21181080 -129602473 - L2 LINE L2 0 3313 3014 22 0 0 0 chr11 21181188 21181210 -129602343 + AT_rich Low_complexity Low_complexity 1 22 0 481 288 25 6 chr11 21182306 21182466 -129601087 + MER103 DNA DNA 1 163 -3 1067 167 27 41 chr11 21182554 21182775 -129600778 - MER20 DNA MER1_type -1 218 1 1806 111 60 57 chr11 21184190 21184488 -129599065 + AluSx SINE Alu 1 299 -13 1039 184 39 26 chr11 21184741 21184974 -129598579 - MER46A DNA MER2_type 0 236 1 210 348 11 0 chr11 21185008 21185097 -129598456 - MIR SINE MIR -12 250 161 222 298 70 0 chr11 21186032 21186089 -129597464 - MIR SINE MIR -5 257 197 254 372 18 9 chr11 21186118 21186344 -129597209 + HAL1b LINE L1 684 911 -437 398 291 9 0 chr11 21186439 21186549 -129597004 + L1ME1 LINE L1 6055 6165 -1 318 347 169 20 chr11 21186663 21187118 -129596435 + L1M4 LINE L1 4711 5233 -913 336 233 83 25 chr11 21187168 21187288 -129596265 + L1M LINE L1 5292 5418 -2390 1392 208 116 61 chr11 21187291 21187862 -129595691 - L1M4 LINE L1 -1052 5094 4493 1437 140 8 8 chr11 21187866 21188102 -129595451 - AluSg SINE Alu -11 299 64 333 244 150 142 chr11 21188345 21188591 -129594962 + MIR SINE MIR 9 256 -6 968 230 9 31 chr11 21189963 21190189 -129593364 - MER58A DNA MER1_type 0 224 4 275 254 28 28 chr11 21190288 21190359 -129593194 - MER91C DNA MER1_type -28 112 42 774 206 83 17 chr11 21190426 21190606 -129592947 + MER58A DNA MER1_type 33 224 0 768 329 119 49 chr11 21191452 21192514 -129591039 + L2 LINE L2 2096 3270 -2 1838 78 4 8 chr11 21193880 21194123 -129589430 - AluSc SINE Alu -36 273 32 189 94 0 0 chr11 21195371 21195403 -129588150 + (TTTTTG)n Simple_repeat Simple_repeat 2 33 0 229 304 113 78 chr11 21195982 21196186 -129587367 + MIR SINE MIR 6 216 -46 30 69 0 0 chr11 21196205 21196263 -129587290 + AT_rich Low_complexity Low_complexity 1 58 0 26 0 0 0 chr11 21196346 21196372 -129587181 + AT_rich Low_complexity Low_complexity 1 26 0 306 333 33 0 chr11 21197137 21197257 -129586296 - LTR67 LTR ERVL -2 555 432 259 284 63 0 chr11 21197471 21197566 -129585987 - LTR67 LTR ERVL -357 200 100 444 282 65 0 chr11 21198245 21198369 -129585184 - MIR SINE MIR -7 255 124 1800 149 11 7 chr11 21199351 21199656 -129583897 - AluSx SINE Alu 0 306 1 921 163 153 24 chr11 21200532 21200741 -129582812 - MER46A DNA MER2_type 0 236 1 1536 173 53 0 chr11 21200964 21201230 -129582323 - Tigger3(Golem) DNA MER2_type 0 3038 69 13504 142 44 31 chr11 21201230 21204615 -129578938 - L1PA11 LINE L1 -3 7609 4173 2040 217 99 50 chr11 21204615 21205700 -129577853 - L1PA11 LINE L1 -4873 2711 188 3801 123 41 12 chr11 21205700 21206287 -129577266 - LTR10E LTR ERV1 -29 604 1 892 244 0 0 chr11 21206287 21206480 -129577073 - L1PA11 LINE L1 -7386 195 3 486 125 56 0 chr11 21206482 21206554 -129576999 - Tigger3(Golem) DNA MER2_type -2952 77 2 1908 108 0 70 chr11 21206646 21206960 -129576593 - AluSx SINE Alu -12 300 9 1201 122 11 21 chr11 21207094 21207283 -129576270 + AluSq SINE Alu 107 293 -20 526 288 165 13 chr11 21207546 21207855 -129575698 - L1ME LINE L1 -5094 976 621 509 184 199 73 chr11 21208006 21208212 -129575341 - MER110A LTR ERV1 -4 464 233 1773 132 73 0 chr11 21208216 21208488 -129575065 + AluSx SINE Alu 1 292 -20 227 247 247 0 chr11 21208613 21208698 -129574855 - MER110A LTR ERV1 -339 129 24 598 127 27 36 chr11 21209363 21209473 -129574080 + FRAM SINE Alu 55 163 -13 201 320 104 40 chr11 21210180 21210305 -129573248 - L2 LINE L2 -1 3271 3139 313 205 33 86 chr11 21210362 21210513 -129573040 + L1MC5 LINE L1 7627 7769 -192 685 242 165 16 chr11 21210702 21210950 -129572603 + L1ME3A LINE L1 5591 5875 -295 421 195 171 0 chr11 21210967 21211049 -129572504 + AluJ/FLAM SINE Alu 1 96 -206 639 283 16 11 chr11 21211049 21211233 -129572320 + L1ME3A LINE L1 5962 6146 -24 525 344 123 40 chr11 21211465 21211895 -129571658 - L2 LINE L2 -575 2739 2274 283 401 88 6 chr11 21214531 21214713 -129568840 - L2 LINE L2 -5 3267 3071 244 336 91 60 chr11 21215080 21215345 -129568208 - L2 LINE L2 -42 3230 2958 1931 117 71 22 chr11 21215345 21215669 -129567884 + THE1B LTR MaLR 1 340 -24 290 290 90 0 chr11 21216100 21216200 -129567353 + L1MEd LINE L1 607 715 -5490 319 247 93 52 chr11 21216532 21216824 -129566729 + L1MEd LINE L1 1074 1261 -4852 * 2213 146 153 9 chr11 21216815 21217274 -129566279 + L1MB8 LINE L1 5639 6163 -15 354 257 40 0 chr11 21217417 21217518 -129566035 - L1ME3A LINE L1 -64 6106 6002 331 273 32 92 chr11 21217609 21217720 -129565833 + L1MEd LINE L1 1538 1654 -4742 2051 147 0 0 chr11 21217720 21218026 -129565527 + AluSx SINE Alu 1 306 -6 331 273 32 92 chr11 21218026 21218196 -129565357 + L1MEd LINE L1 1654 1802 -4594 928 203 155 19 chr11 21218303 21218613 -129564940 + L1ME3A LINE L1 5799 6150 -20 711 190 0 16 chr11 21220748 21220869 -129562684 + FLAM_A SINE Alu 11 129 -13 337 125 0 0 chr11 21221437 21221485 -129562068 + Alu SINE Alu 1 48 -255 293 255 148 9 chr11 21221739 21221912 -129561641 - L1ME LINE L1 -4467 1613 1395 1278 237 146 23 chr11 21221915 21222581 -129560972 - L1ME LINE L1 -4983 1097 386 348 343 35 6 chr11 21222668 21222840 -129560713 - L1ME LINE L1 -5573 497 321 184 352 110 0 chr11 21222956 21223047 -129560506 - L2 LINE L2 -5 3308 3208 373 247 0 32 chr11 21223116 21223209 -129560344 - L2 LINE L2 -3 3269 3180 1323 126 0 0 chr11 21223722 21223897 -129559656 + AluSg SINE Alu 1 175 -135 353 67 0 0 chr11 21223901 21223946 -129559607 + AluSg/x SINE Alu 86 130 -170 852 160 104 0 chr11 21223946 21224090 -129559463 + AluJo/FRAM SINE Alu 137 295 -7 317 297 61 42 chr11 21224312 21224477 -129559076 - MLT1H LTR MaLR 0 549 382 1902 115 50 4 chr11 21225292 21225571 -129557982 - AluSx SINE Alu -20 292 1 442 139 28 14 chr11 21225894 21225966 -129557587 + AluJ/FLAM SINE Alu 2 74 -238 1665 91 59 0 chr11 21225973 21226192 -129557361 - AluSq SINE Alu -12 301 70 991 185 44 36 chr11 21226294 21226543 -129557010 + AluJo SINE Alu 42 292 -20 592 170 100 75 chr11 21226556 21226756 -129556797 + L1MEc LINE L1 2166 2370 -4026 2170 226 71 24 chr11 21227019 21227693 -129555860 + L1M4 LINE L1 4342 5047 -1099 2647 213 102 32 chr11 21230275 21231093 -129552460 - L1ME1 LINE L1 -16 6150 5276 2157 234 115 18 chr11 21231099 21231589 -129551964 - L1ME1 LINE L1 -1192 4954 4513 234 0 0 0 chr11 21231589 21231615 -129551938 + (TG)n Simple_repeat Simple_repeat 1 26 0 * 534 16 0 0 chr11 21231614 21231677 -129551876 + (GA)n Simple_repeat Simple_repeat 1 63 0 2157 234 115 18 chr11 21231615 21231678 -129551875 - L1ME1 LINE L1 -1633 4513 4458 1812 158 4 0 chr11 21231678 21231957 -129551596 - AluSx SINE Alu -32 280 1 2157 234 115 18 chr11 21231957 21232228 -129551325 - L1ME1 LINE L1 -1688 4458 4117 773 262 74 9 chr11 21232903 21233132 -129550421 + MIR SINE MIR 8 251 -11 255 313 104 0 chr11 21234175 21234309 -129549244 + L2 LINE L2 3146 3293 -20 2030 112 10 17 chr11 21234417 21234711 -129548842 + AluSx SINE Alu 1 292 -20 2020 99 4 0 chr11 21234748 21235010 -129548543 + AluSx SINE Alu 1 263 -49 648 105 0 0 chr11 21235011 21235097 -129548456 + Alu SINE Alu 221 306 -6 39 88 0 0 chr11 21236170 21236272 -129547281 + AT_rich Low_complexity Low_complexity 1 102 0 1546 185 36 21 chr11 21236277 21236558 -129546995 + AluJo SINE Alu 5 289 -23 1503 171 70 0 chr11 21236584 21236841 -129546712 + AluJo SINE Alu 1 275 -37 398 226 63 28 chr11 21237062 21237238 -129546315 + MIR SINE MIR 8 238 -24 304 281 9 44 chr11 21237815 21237929 -129545624 + HAL1b LINE L1 1232 1341 -7 479 257 133 58 chr11 21238105 21238211 -129545342 - MIR SINE MIR 0 262 165 2160 120 0 0 chr11 21238211 21238515 -129545038 - AluSx SINE Alu 0 304 1 479 257 133 58 chr11 21238515 21238633 -129544920 - MIR SINE MIR -97 165 20 188 305 96 51 chr11 21238760 21238937 -129544616 + MIR SINE MIR 2 186 -76 1518 210 35 3 chr11 21239191 21239477 -129544076 + AluJb SINE Alu 1 295 -17 262 232 18 0 chr11 21239522 21239578 -129543975 - L2 LINE L2 0 3272 3216 215 262 16 16 chr11 21239704 21239765 -129543788 - L2 LINE L2 -220 3052 2992 900 195 17 0 chr11 21239848 21240022 -129543531 - MER5A DNA MER1_type 0 189 13 377 316 113 66 chr11 21240730 21241321 -129542232 - L1MC4a LINE L1 -453 5717 5315 511 92 0 6 chr11 21241439 21241700 -129541853 + AluSx SINE Alu 1 312 0 283 293 13 115 chr11 21241840 21241997 -129541556 - MIR3 SINE MIR -35 173 33 387 291 128 11 chr11 21242189 21242368 -129541185 + MIR SINE MIR 63 262 0 2142 148 0 0 chr11 21242831 21243142 -129540411 - AluSx SINE Alu -1 311 1 248 279 16 25 chr11 21243149 21243271 -129540282 + LTR16C LTR ERVL 369 489 -2 2451 117 43 6 chr11 21243669 21244020 -129539533 - THE1B LTR MaLR 0 364 1 232 333 39 39 chr11 21244389 21244491 -129539062 + L2 LINE L2 2983 3084 -188 215 330 91 0 chr11 21244577 21244665 -129538888 + L2 LINE L2 3177 3272 0 398 295 90 0 chr11 21244790 21244912 -129538641 + L2 LINE L2 3181 3313 0 237 330 28 9 chr11 21245257 21245363 -129538190 - HAL1b LINE L1 -45 1303 1196 1146 262 133 18 chr11 21245386 21245837 -129537716 - MLT1J LTR MaLR -8 503 1 556 197 7 61 chr11 21245947 21246094 -129537459 + MIR SINE MIR 120 258 -4 424 283 110 42 chr11 21246094 21246402 -129537151 - L1MC4a LINE L1 -1906 5902 5574 248 300 0 67 chr11 21246435 21246525 -129537028 - L2 LINE L2 -3 3269 3186 675 266 108 0 chr11 21246770 21246973 -129536580 + MIR SINE MIR 15 239 -23 5135 74 11 11 chr11 21247028 21247229 -129536324 - L1PA10 LINE L1 0 6168 5968 6526 89 193 34 chr11 21247229 21248321 -129535232 + MER11A LTR ERVK 1 1266 0 5135 74 11 11 chr11 21248321 21248770 -129534783 - L1PA10 LINE L1 -199 5969 5518 209 316 44 21 chr11 21249131 21249293 -129534260 - L2 LINE L2 -287 2985 2817 511 337 31 10 chr11 21249533 21249729 -129533824 - MIR SINE MIR -3 259 60 566 295 12 18 chr11 21250715 21250897 -129532656 + MIR SINE MIR 35 215 -47 198 0 0 0 chr11 21250924 21250946 -129532607 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 227 319 29 0 chr11 21251113 21251182 -129532371 + MIR SINE MIR 66 136 -126 1178 188 25 46 chr11 21251198 21251469 -129532084 + L1MB8 LINE L1 5018 5293 -885 2273 96 0 0 chr11 21251469 21251792 -129531761 + AluSx SINE Alu 1 323 0 1178 188 25 46 chr11 21251792 21251896 -129531657 + L1MB8 LINE L1 5293 5398 -780 1927 129 18 7 chr11 21251896 21252175 -129531378 + AluSx SINE Alu 1 282 -30 189 0 0 0 chr11 21252180 21252201 -129531352 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 1178 188 25 46 chr11 21252201 21252884 -129530669 + L1MB8 LINE L1 5402 6143 -35 486 200 267 33 chr11 21253118 21253328 -129530225 - MIR SINE MIR -2 260 2 369 300 17 41 chr11 21254576 21254813 -129528740 + CT-rich Low_complexity Low_complexity 1 231 0 203 272 29 19 chr11 21255922 21256025 -129527528 + MIR3 SINE MIR 101 204 -4 922 221 42 27 chr11 21256306 21256569 -129526984 - MER20B DNA MER1_type -14 769 503 234 284 19 37 chr11 21256817 21256979 -129526574 + (CATATA)n Simple_repeat Simple_repeat 2 160 0 255 299 31 31 chr11 21257120 21257217 -129526336 - MER20B DNA MER1_type -302 481 385 2109 219 24 50 chr11 21257233 21257814 -129525739 + L1ME1 LINE L1 5615 6183 -1 1351 272 14 22 chr11 21257823 21258180 -129525373 - MER20B DNA MER1_type -429 354 1 343 291 51 0 chr11 21258194 21258311 -129525242 - MIR3 SINE MIR -72 136 14 189 161 0 0 chr11 21258908 21258939 -129524614 + L2 LINE L2 3236 3266 -6 563 251 120 6 chr11 21259215 21259382 -129524171 + MIR SINE MIR 8 193 -69 1479 207 7 27 chr11 21259642 21259937 -129523616 + AluJb SINE Alu 1 289 -23 677 132 16 36 chr11 21260350 21260599 -129522954 + CT-rich Low_complexity Low_complexity 1 244 0 1589 194 3 0 chr11 21260599 21260882 -129522671 - AluJo SINE Alu -28 284 1 326 333 17 0 chr11 21260900 21261017 -129522536 - L2 LINE L2 -4 3268 3150 324 70 0 0 chr11 21261268 21261311 -129522242 + (TCCC)n Simple_repeat Simple_repeat 4 46 0 2314 109 67 17 chr11 21261595 21261952 -129521601 - THE1C LTR MaLR 0 375 1 11110 110 48 3 chr11 21261952 21263464 -129520089 - THE1C-int LTR MaLR 0 1580 1 2937 83 16 8 chr11 21263464 21263836 -129519717 - THE1C LTR MaLR 0 375 1 24 0 0 0 chr11 21264073 21264097 -129519456 + AT_rich Low_complexity Low_complexity 1 24 0 400 269 69 110 chr11 21264256 21264382 -129519171 + MIR SINE MIR 28 141 -121 2121 133 13 0 chr11 21264382 21264684 -129518869 + AluJb SINE Alu 1 306 -6 400 269 69 110 chr11 21264684 21264802 -129518751 + MIR SINE MIR 141 262 0 2200 122 3 10 chr11 21264997 21265309 -129518244 - AluSx SINE Alu -2 310 1 485 295 68 0 chr11 21266290 21266436 -129517117 + MIR SINE MIR 38 192 -60 276 225 163 0 chr11 21266530 21266610 -129516943 + HAL1 LINE L1 4 96 -2411 968 28 0 0 chr11 21266618 21266725 -129516828 + L1PA8 LINE L1 6063 6169 -3 891 247 127 32 chr11 21266828 21267144 -129516409 - MLT1H LTR MaLR -1 548 203 928 316 55 8 chr11 21267367 21267734 -129515819 + HAL1 LINE L1 163 546 -1961 1460 195 150 77 chr11 21267741 21268300 -129515253 + HAL1 LINE L1 1169 1768 -739 1275 188 171 22 chr11 21268300 21268662 -129514891 + LTR50 LTR ERVL 1 416 -379 305 357 36 0 chr11 21268722 21268806 -129514747 + HAL1 LINE L1 1763 1849 -658 1701 244 97 39 chr11 21268806 21269323 -129514230 + MLT1H LTR MaLR 3 549 0 1146 252 117 41 chr11 21269323 21269838 -129513715 + HAL1 LINE L1 1845 2398 -109 363 179 0 0 chr11 21269882 21269969 -129513584 - AluJ/FRAM SINE Alu 0 314 228 1591 148 115 0 chr11 21270063 21270341 -129513212 + AluJb SINE Alu 1 310 -2 559 350 80 24 chr11 21270508 21270971 -129512582 + L2 LINE L2 2487 2975 -339 408 267 27 13 chr11 21271304 21271447 -129512106 + MLT1L LTR MaLR 369 615 0 949 259 45 0 chr11 21271560 21271807 -129511746 + MIR SINE MIR 5 262 0 299 309 111 32 chr11 21271842 21271968 -129511585 + L2 LINE L2 3177 3312 -1 183 205 0 0 chr11 21272457 21272496 -129511057 + CT-rich Low_complexity Low_complexity 2 40 0 387 183 0 56 chr11 21273082 21273153 -129510400 + AluJb SINE Alu 1 67 -235 1807 122 8 8 chr11 21273154 21273417 -129510136 + MLT2A2 LTR ERVL 50 312 -141 1356 184 0 8 chr11 21273537 21273787 -129509766 + AluJb SINE Alu 65 312 0 614 271 98 21 chr11 21273880 21274116 -129509437 - MIR SINE MIR 0 262 9 246 250 0 19 chr11 21274448 21274500 -129509053 - MIR3 SINE MIR -21 187 137 432 228 0 0 chr11 21274572 21274664 -129508889 - MLT1I LTR MaLR 0 409 318 514 46 0 0 chr11 21274669 21274734 -129508819 - MLT2A2 LTR ERVL 0 453 389 2035 126 84 62 chr11 21274734 21275172 -129508381 + LTR7 LTR ERV1 1 448 -2 16959 99 14 21 chr11 21275175 21278068 -129505485 + HERVH LTR ERV1 2 2995 -4718 992 120 7 0 chr11 21278047 21278197 -129505356 + HERVH LTR ERV1 3140 3290 -4423 * 3079 104 0 7 chr11 21278187 21278627 -129504926 + HERVH LTR ERV1 3492 3928 -3785 422 143 63 0 chr11 21278633 21278696 -129504857 + HERVH LTR ERV1 5753 5819 -1894 2463 95 45 13 chr11 21278696 21279074 -129504479 + HERVH LTR ERV1 7324 7713 0 2052 132 75 55 chr11 21279074 21279513 -129504040 + LTR7 LTR ERV1 1 448 -2 739 178 42 2 chr11 21279515 21279676 -129503877 - MLT2A2 LTR ERVL -54 500 293 2121 111 6 19 chr11 21279771 21280086 -129503467 - MLT2A2 LTR ERVL -142 311 1 619 330 22 9 chr11 21280091 21280318 -129503235 - MLT1I LTR MaLR -95 314 85 258 263 129 14 chr11 21280426 21280578 -129502975 - L1ME4a LINE L1 -2 6119 5935 2011 120 3 7 chr11 21280578 21280886 -129502667 - AluSx SINE Alu -3 309 3 258 263 129 14 chr11 21280886 21280942 -129502611 - L1ME4a LINE L1 -186 5935 5887 2109 64 7 11 chr11 21281123 21281403 -129502150 + AluY SINE Alu 1 279 -32 332 198 0 10 chr11 21281803 21281904 -129501649 + GA-rich Low_complexity Low_complexity 2 101 0 22862 42 8 9 chr11 21282219 21285782 -129497771 + L1PA5 LINE L1 2574 6151 -3 3122 167 2 33 chr11 21286433 21286764 -129496789 - MLT2B1 LTR ERVL 0 520 208 2025 113 3 0 chr11 21286764 21287087 -129496466 - AluSp SINE Alu 0 324 1 3122 167 2 33 chr11 21287087 21287268 -129496285 - MLT2B1 LTR ERVL -312 208 23 597 188 0 10 chr11 21287268 21287364 -129496189 + AluJo SINE Alu 125 219 -93 476 292 30 24 chr11 21288583 21288751 -129494802 + MLT1K LTR MaLR 1 169 -419 1420 209 82 47 chr11 21289272 21289356 -129494197 + MLT1D LTR MaLR 113 193 -312 1853 135 60 0 chr11 21289356 21289637 -129493916 + AluSg SINE Alu 1 298 -12 1420 209 82 47 chr11 21289637 21289916 -129493637 + MLT1D LTR MaLR 193 489 -16 246 253 103 0 chr11 21289961 21290048 -129493505 + MIR SINE MIR 167 262 0 1887 164 19 82 chr11 21290238 21290654 -129492899 - MLT1B LTR MaLR 0 390 1 202 260 87 58 chr11 21290911 21291015 -129492538 + MIR SINE MIR 35 141 -121 873 284 185 9 chr11 21291421 21291847 -129491706 - MLT1J LTR MaLR -2 509 9 2281 94 0 3 chr11 21291917 21292226 -129491327 - AluY SINE Alu -3 308 1 358 263 17 59 chr11 21292416 21292534 -129491019 - MIR SINE MIR -65 197 85 1881 140 0 0 chr11 21293002 21293281 -129490272 + AluJb SINE Alu 1 279 -33 192 97 0 0 chr11 21293281 21293312 -129490241 + (CAAAA)n Simple_repeat Simple_repeat 1 31 0 2247 92 3 0 chr11 21293469 21293763 -129489790 + AluSp SINE Alu 1 295 -18 208 265 0 186 chr11 21293806 21294021 -129489532 - MIR SINE MIR -14 248 74 207 0 0 0 chr11 21294063 21294086 -129489467 + (T)n Simple_repeat Simple_repeat 1 23 0 2419 137 19 82 chr11 21294248 21294343 -129489210 - Tigger2 DNA MER2_type 0 2718 2619 1702 163 33 0 chr11 21294343 21294643 -129488910 - AluJb SINE Alu -2 310 1 2419 137 19 82 chr11 21294643 21295023 -129488530 - Tigger2 DNA MER2_type -99 2619 2273 2373 79 0 0 chr11 21295034 21295339 -129488214 - AluSg1 SINE Alu -4 305 1 430 173 136 0 chr11 21295339 21295420 -129488133 + MER8 DNA MER2_type 148 239 0 779 301 101 30 chr11 21295991 21296357 -129487196 + LTR16C LTR ERVL 68 459 -32 375 139 124 93 chr11 21296536 21296665 -129486888 + MLT1K LTR MaLR 448 580 -8 302 310 35 56 chr11 21297528 21297670 -129485883 + L1ME4a LINE L1 5579 5717 -404 887 183 0 33 chr11 21297673 21297853 -129485700 + FRAM SINE Alu 1 166 -10 457 268 128 26 chr11 21297853 21298204 -129485349 + L1ME4a LINE L1 5730 6116 -5 532 258 108 11 chr11 21298400 21298586 -129484967 + MER3 DNA MER1_type 1 204 -5 257 317 118 21 chr11 21298617 21298803 -129484750 - L2 LINE L2 -172 3100 2897 2441 53 0 0 chr11 21298896 21299197 -129484356 + AluY SINE Alu 1 301 -10 230 294 83 89 chr11 21299401 21299581 -129483972 - MIR SINE MIR -34 228 50 23 54 0 0 chr11 21300950 21300987 -129482566 + AT_rich Low_complexity Low_complexity 1 37 0 252 122 0 0 chr11 21301150 21301191 -129482362 + (CA)n Simple_repeat Simple_repeat 2 42 0 319 228 134 31 chr11 21301238 21301365 -129482188 - L1ME4a LINE L1 -187 5934 5795 307 233 103 0 chr11 21301416 21301531 -129482022 - L1ME4a LINE L1 -459 5662 5593 230 326 42 56 chr11 21301566 21301710 -129481843 + MIR3 SINE MIR 67 208 0 347 235 208 95 chr11 21302293 21302407 -129481146 - MIR SINE MIR 0 262 162 2135 93 10 0 chr11 21302407 21302698 -129480855 - AluY SINE Alu -17 294 1 347 235 208 95 chr11 21302698 21302804 -129480749 - MIR SINE MIR -100 162 17 210 71 0 0 chr11 21303645 21303673 -129479880 + (TTC)n Simple_repeat Simple_repeat 2 29 0 219 338 113 0 chr11 21304788 21304921 -129478632 + MIR SINE MIR 109 256 -6 777 22 0 0 chr11 21307183 21307274 -129476279 + (GAA)n Simple_repeat Simple_repeat 2 92 0 646 260 35 0 chr11 21309030 21309199 -129474354 + MER69A DNA AcHobo 3 177 0 262 258 8 61 chr11 21309311 21309443 -129474110 + CT-rich Low_complexity Low_complexity 2 126 0 204 97 0 0 chr11 21309553 21309584 -129473969 + (CA)n Simple_repeat Simple_repeat 1 31 0 601 287 25 6 chr11 21310268 21310425 -129473128 - MIR3 SINE MIR -3 205 46 231 248 177 35 chr11 21313189 21313302 -129470251 - L2 LINE L2 -182 3090 2962 271 233 41 41 chr11 21314557 21314630 -129468923 - L2 LINE L2 0 3313 3241 250 275 75 17 chr11 21314706 21314826 -129468727 - MER5A DNA MER1_type -9 180 54 * 253 256 93 23 chr11 21314741 21314827 -129468726 + MER5A DNA MER1_type 56 147 -42 193 302 364 0 chr11 21314846 21314975 -129468578 + MER5A DNA MER1_type 8 183 -6 313 276 58 52 chr11 21315217 21315406 -129468147 + MIR SINE MIR 6 193 -67 408 67 0 0 chr11 21315760 21315820 -129467733 + (TC)n Simple_repeat Simple_repeat 1 60 0 297 0 0 0 chr11 21315820 21315853 -129467700 + (TG)n Simple_repeat Simple_repeat 2 34 0 26 0 0 0 chr11 21316132 21316158 -129467395 + AT_rich Low_complexity Low_complexity 1 26 0 929 139 85 18 chr11 21317616 21317781 -129465772 + MER20 DNA MER1_type 2 177 -42 2678 111 93 47 chr11 21317782 21318042 -129465511 + LTR26B LTR ERV1 1 292 -239 1818 156 7 0 chr11 21318042 21318343 -129465210 + AluSx SINE Alu 9 311 -1 2678 111 93 47 chr11 21318343 21318532 -129465021 + LTR26B LTR ERV1 292 471 -60 451 195 0 35 chr11 21318806 21318893 -129464660 + LTR26B LTR ERV1 447 530 -1 296 253 11 53 chr11 21319128 21319223 -129464330 - MIR SINE MIR -4 258 168 1665 179 0 7 chr11 21319384 21319681 -129463872 - AluJo SINE Alu -17 295 1 296 186 9 177 chr11 21319824 21319937 -129463616 + MER102a DNA MER1_type 237 330 0 837 221 11 11 chr11 21320006 21320187 -129463366 + MIR SINE MIR 82 262 0 405 198 86 0 chr11 21320315 21320431 -129463122 + MIR SINE MIR 118 243 -19 1071 158 0 6 chr11 21320511 21320688 -129462865 - FRAM SINE Alu -3 173 1 1043 173 11 22 chr11 21320689 21320874 -129462679 - MER20 DNA MER1_type -34 185 3 747 264 68 10 chr11 21321104 21321318 -129462235 + MIR SINE MIR 37 260 -2 2215 100 3 0 chr11 21322218 21322528 -129461025 - AluY SINE Alu 0 311 1 734 222 78 99 chr11 21322612 21322946 -129460607 - MER102a DNA MER1_type 0 330 4 180 200 0 0 chr11 21324559 21324604 -129458949 + CT-rich Low_complexity Low_complexity 2 46 0 233 280 243 9 chr11 21324806 21324913 -129458640 + MIR3 SINE MIR 15 146 -62 * 391 216 62 21 chr11 21324882 21324979 -129458574 + MIR SINE MIR 113 213 -49 1785 137 0 14 chr11 21325516 21325800 -129457753 + AluSx SINE Alu 1 280 -32 315 0 0 0 chr11 21325807 21325842 -129457711 + (CA)n Simple_repeat Simple_repeat 2 36 0 361 190 89 13 chr11 21326543 21326622 -129456931 + MIR3 SINE MIR 119 203 -5 304 221 53 71 chr11 21326628 21326741 -129456812 + MIR3 SINE MIR 77 187 -21 718 242 105 5 chr11 21327140 21327330 -129456223 + MIR SINE MIR 29 237 -25 528 288 204 5 chr11 21327452 21327643 -129455910 - MIR SINE MIR -14 248 20 2005 129 0 19 chr11 21327646 21327964 -129455589 - AluSx SINE Alu 0 312 1 375 279 88 15 chr11 21328087 21328223 -129455330 + MIR3 SINE MIR 38 183 -25 211 254 55 55 chr11 21328609 21328719 -129454834 - L3b LINE CR1 -230 1353 1244 762 130 91 45 chr11 21329173 21329327 -129454226 + MER96 DNA MER1_type? 15 175 0 227 299 85 43 chr11 21329354 21329518 -129454035 + MIR SINE MIR 1 171 -91 1254 258 142 18 chr11 21330154 21330953 -129452600 + L2 LINE L2 2396 3300 -13 194 0 39 0 chr11 21331000 21331026 -129452527 + (TA)n Simple_repeat Simple_repeat 2 28 0 1982 118 7 0 chr11 21331026 21331313 -129452240 - AluSx SINE Alu -23 289 1 451 198 45 152 chr11 21331738 21331981 -129451572 - MIR SINE MIR -33 229 13 2191 112 0 0 chr11 21332120 21332423 -129451130 - AluSq SINE Alu -10 303 1 335 155 0 17 chr11 21332834 21332892 -129450661 + L2 LINE L2 3254 3310 -3 702 287 30 26 chr11 21332893 21333123 -129450430 - MIR SINE MIR -12 250 20 1245 110 4 114 chr11 21335271 21335516 -129448037 - MLT1B LTR MaLR -170 220 3 342 326 141 7 chr11 21335645 21335780 -129447773 + MIR3 SINE MIR 9 161 -47 380 306 141 0 chr11 21335783 21335953 -129447600 - MIR SINE MIR -12 250 57 291 149 21 0 chr11 21336286 21336333 -129447220 - MLT1A1 LTR MaLR 0 374 327 1439 129 4 0 chr11 21336364 21336589 -129446964 - L1MA5 LINE L1 -2 6298 6073 1805 99 62 34 chr11 21336592 21336884 -129446669 - AluSq SINE Alu -13 300 1 496 118 25 0 chr11 21336887 21336979 -129446574 - L1MA5A LINE L1 -189 6108 6021 1522 183 49 23 chr11 21336982 21337288 -129446265 - MLT1A1 LTR MaLR -51 314 1 775 257 54 54 chr11 21340528 21340731 -129442822 - MIR SINE MIR 0 262 57 2063 99 0 10 chr11 21340731 21341034 -129442519 - AluSg SINE Alu -10 300 1 775 257 54 54 chr11 21341034 21341091 -129442462 - MIR SINE MIR -204 58 2 725 316 32 16 chr11 21342000 21342247 -129441306 - MIR SINE MIR 0 262 12 790 100 93 27 chr11 21342386 21342536 -129441017 + L1PA10 LINE L1 6008 6167 -1 1059 168 0 56 chr11 21342578 21342810 -129440743 - MER20 DNA MER1_type 0 219 1 1041 187 0 0 chr11 21344434 21344605 -129438948 + FAM SINE Alu 5 175 0 324 215 66 116 chr11 21344770 21344891 -129438662 + MIR3 SINE MIR 81 168 -40 24 0 0 0 chr11 21348823 21348847 -129434706 + AT_rich Low_complexity Low_complexity 1 24 0 465 317 7 0 chr11 21348935 21349077 -129434476 - MER45A DNA AcHobo 0 178 36 407 324 54 9 chr11 21350368 21350532 -129433021 - MIR3 SINE MIR -27 181 3 2953 146 45 9 chr11 21350930 21351573 -129431980 - L1MA7 LINE L1 -11 6280 5509 403 165 141 12 chr11 21351572 21351657 -129431896 - L1ME3A LINE L1 -38 6132 6037 * 2127 121 0 3 chr11 21351663 21351977 -129431576 - AluSq SINE Alu 0 313 1 2127 100 10 0 chr11 21352500 21352799 -129430754 - AluY SINE Alu -9 302 1 403 321 0 0 chr11 21353931 21354037 -129429516 - MIR SINE MIR -63 145 40 252 77 0 0 chr11 21354076 21354115 -129429438 + (TA)n Simple_repeat Simple_repeat 2 40 0 456 211 28 28 chr11 21354180 21354360 -129429193 + (TA)n Simple_repeat Simple_repeat 1 180 0 813 313 19 8 chr11 21354435 21354691 -129428862 - MIR SINE MIR 0 262 4 182 178 44 0 chr11 21355146 21355191 -129428362 + CT-rich Low_complexity Low_complexity 2 48 0 393 299 92 37 chr11 21355668 21355885 -129427668 - MIR SINE MIR 0 262 34 2665 16 0 0 chr11 21357515 21357818 -129425735 - AluY SINE Alu -8 303 1 325 154 13 13 chr11 21358046 21358124 -129425429 + C-rich Low_complexity Low_complexity 3 80 0 1657 155 7 7 chr11 21358136 21358426 -129425127 - AluSx SINE Alu -22 290 1 2210 111 7 0 chr11 21358479 21358786 -129424767 + AluSx SINE Alu 1 309 -3 506 252 13 45 chr11 21360081 21360236 -129423317 + MER5A DNA MER1_type 1 150 -39 279 0 0 0 chr11 21367154 21367185 -129416368 + (TG)n Simple_repeat Simple_repeat 2 32 0 584 249 17 60 chr11 21367185 21367409 -129416144 - L1MC5 LINE L1 -33 7928 7713 316 297 70 8 chr11 21368107 21368235 -129415318 + MLT1J LTR MaLR 4 139 -372 466 262 47 47 chr11 21368312 21368503 -129415050 + MLT1H LTR MaLR 95 285 -264 532 282 85 38 chr11 21368732 21369033 -129414520 + MLT1J LTR MaLR 133 511 0 588 225 191 0 chr11 21369403 21369576 -129413977 + MIR SINE MIR 46 251 -11 651 222 232 0 chr11 21370193 21370378 -129413175 - MLT1C LTR MaLR 0 505 278 1913 138 3 3 chr11 21370388 21370686 -129412867 - AluSx SINE Alu -12 300 3 2144 147 90 21 chr11 21370688 21371075 -129412478 - MSTC LTR MaLR -14 414 1 901 181 63 19 chr11 21371084 21371289 -129412264 - MLT1C LTR MaLR -220 247 34 1132 254 137 34 chr11 21371767 21372659 -129410894 - L2 LINE L2 0 3313 2334 4083 183 69 22 chr11 21372694 21373665 -129409888 - L1MB8 LINE L1 -16 6162 5144 748 263 35 13 chr11 21373681 21373909 -129409644 - L2 LINE L2 -1007 2307 2075 9274 38 0 4 chr11 21375866 21377651 -129405902 - L1PA4 LINE L1 -90 6065 4288 * 28571 46 5 3 chr11 21377644 21381950 -129401603 + L1PA5 LINE L1 1835 6151 -3 3051 169 2 35 chr11 21382601 21382932 -129400621 - MLT2B1 LTR ERVL 0 520 209 2126 113 3 0 chr11 21382932 21383255 -129400298 - AluSp SINE Alu 0 324 1 3051 169 2 35 chr11 21383255 21383437 -129400116 - MLT2B1 LTR ERVL -311 209 23 632 188 0 10 chr11 21383437 21383533 -129400020 + AluJo SINE Alu 125 219 -93 473 292 30 24 chr11 21384752 21384920 -129398633 + MLT1K LTR MaLR 1 169 -419 1409 209 82 47 chr11 21385441 21385525 -129398028 + MLT1D LTR MaLR 113 193 -312 1942 136 61 0 chr11 21385525 21385805 -129397748 + AluSg SINE Alu 1 297 -13 1409 209 82 47 chr11 21385805 21386084 -129397469 + MLT1D LTR MaLR 193 489 -16 235 253 103 0 chr11 21386129 21386216 -129397337 + MIR SINE MIR 167 262 0 2013 164 19 82 chr11 21386406 21386822 -129396731 - MLT1B LTR MaLR 0 390 1 198 298 77 48 chr11 21387079 21387183 -129396370 + MIR SINE MIR 35 141 -121 870 282 185 9 chr11 21387589 21388015 -129395538 - MLT1J LTR MaLR -2 509 9 2385 87 0 10 chr11 21388085 21388394 -129395159 - AluY SINE Alu -5 306 1 345 263 17 59 chr11 21388584 21388702 -129394851 - MIR SINE MIR -65 197 85 1977 140 0 0 chr11 21389170 21389449 -129394104 + AluJb SINE Alu 1 279 -33 192 97 0 0 chr11 21389449 21389480 -129394073 + (CAAAA)n Simple_repeat Simple_repeat 1 31 0 2361 92 3 0 chr11 21389637 21389931 -129393622 + AluSp SINE Alu 1 295 -18 199 295 35 157 chr11 21389974 21390235 -129393318 - MIR SINE MIR -14 248 20 22 0 0 0 chr11 21390235 21390257 -129393296 + AT_rich Low_complexity Low_complexity 1 22 0 180 111 0 0 chr11 21390716 21390743 -129392810 + (AGGTG)n Simple_repeat Simple_repeat 1 27 0 215 292 111 103 chr11 21391665 21392025 -129391528 - L2 LINE L2 -1 3271 2909 2350 95 3 10 chr11 21392888 21393192 -129390361 - AluSp SINE Alu -11 302 1 326 320 16 8 chr11 21394585 21394710 -129388843 - MIR SINE MIR -85 177 52 380 250 116 0 chr11 21394953 21395065 -129388488 - MLT1A1 LTR MaLR -19 530 406 495 281 20 7 chr11 21395220 21395373 -129388180 - MLT1H LTR MaLR -387 162 8 238 288 72 36 chr11 21395687 21395798 -129387755 + L2 LINE L2 2733 2847 -467 253 108 0 77 chr11 21395804 21395869 -129387684 - AluSp/q SINE Alu -1 302 243 357 293 161 51 chr11 21396187 21396542 -129387011 + L2 LINE L2 2816 3209 -104 1152 249 20 64 chr11 21397519 21397865 -129385688 + MER46C DNA MER2_type 1 331 -7 1085 209 35 97 chr11 21398742 21399053 -129384500 - MLT1A1 LTR MaLR -68 297 6 265 289 36 0 chr11 21399378 21399461 -129384092 - L2 LINE L2 -517 2797 2712 355 294 28 0 chr11 21399899 21400008 -129383545 + L2 LINE L2 3197 3308 -5 1009 177 27 5 chr11 21400239 21400425 -129383128 - MLT1D LTR MaLR -315 190 1 3775 200 125 112 chr11 21400427 21401779 -129381774 - MLT1D-int LTR MaLR 0 1371 3 2072 217 36 36 chr11 21401782 21402276 -129381277 - MLT1D LTR MaLR 0 505 12 1221 211 58 12 chr11 21402365 21402707 -129380846 - Charlie5 DNA MER1_type 0 2624 2267 1031 234 36 53 chr11 21402734 21403071 -129380482 - L1ME1 LINE L1 -5 6161 5831 * 1131 231 79 50 chr11 21403066 21403458 -129380095 - L1MEc LINE L1 -4036 2360 1981 1171 128 37 46 chr11 21403458 21403676 -129379877 - L1PA16 LINE L1 -1 6165 5950 1131 231 79 50 chr11 21403676 21404266 -129379287 - L1MEc LINE L1 -4415 1981 1187 928 121 0 35 chr11 21404280 21404421 -129379132 + AluJo SINE Alu 1 136 -176 27 0 0 0 chr11 21404433 21404460 -129379093 + AT_rich Low_complexity Low_complexity 1 27 0 3110 244 96 22 chr11 21404468 21405456 -129378097 - L1MEc LINE L1 -5223 1173 113 711 194 0 0 chr11 21405464 21405593 -129377960 - MER3 DNA MER1_type -87 122 41 529 225 66 53 chr11 21405688 21405839 -129377714 + MIR SINE MIR 96 248 -14 316 258 32 0 chr11 21405999 21406092 -129377461 - MIR SINE MIR -51 211 116 228 286 168 8 chr11 21406112 21406231 -129377322 + MIR SINE MIR 85 222 -40 2353 131 71 13 chr11 21406563 21406944 -129376609 - MER57A LTR ERV1 0 403 1 513 252 94 19 chr11 21406944 21407103 -129376450 - MER57A-int LTR ERV1 0 7537 7367 491 170 113 104 chr11 21407106 21407336 -129376217 - LTR54 LTR ERV1 -271 239 8 294 99 197 14 chr11 21407367 21407438 -129376115 - L1MA3 LINE L1 -2 6303 6220 1890 253 48 52 chr11 21407438 21407754 -129375799 - MER57A-int LTR ERV1 -406 7131 6816 2144 115 7 3 chr11 21407754 21408049 -129375504 - AluSx SINE Alu -16 296 1 1890 253 48 52 chr11 21408049 21408333 -129375220 - MER57A-int LTR ERV1 -721 6816 6533 27 0 0 0 chr11 21408337 21408364 -129375189 + AT_rich Low_complexity Low_complexity 1 27 0 5909 104 11 31 chr11 21408389 21409437 -129374116 - L1PA16 LINE L1 -9 6157 5148 41980 59 11 2 chr11 21409442 21415541 -129368012 - L1PA3 LINE L1 -1 6154 3 1395 207 15 9 chr11 21415541 21415874 -129367679 - L1P LINE L1 -749 5397 5063 1967 145 3 14 chr11 21415874 21416171 -129367382 - MER1B DNA MER1_type 0 339 46 9508 204 17 8 chr11 21416186 21418295 -129365258 - L1 LINE L1 -1075 5787 3660 16125 137 54 36 chr11 21418300 21421255 -129362298 - L1PBa LINE L1 -3854 3008 1 2164 123 0 9 chr11 21421258 21421574 -129361979 - AluSq SINE Alu 0 313 1 1060 153 0 17 chr11 21421582 21421758 -129361795 - AluJb SINE Alu -7 305 133 28 79 0 0 chr11 21421767 21421830 -129361723 + AT_rich Low_complexity Low_complexity 1 63 0 272 288 0 25 chr11 21421830 21421910 -129361643 - L2 LINE L2 -15 3298 3221 2164 64 35 7 chr11 21422029 21422311 -129361242 + AluY SINE Alu 1 290 -21 443 293 24 36 chr11 21422414 21422581 -129360972 - MIR SINE MIR -73 189 25 227 283 160 10 chr11 21423244 21423368 -129360185 + MIR3 SINE MIR 1 143 -65 775 316 60 0 chr11 21423707 21423941 -129359612 + MIR SINE MIR 12 259 -3 300 275 82 0 chr11 21424070 21424205 -129359348 - L1ME LINE L1 -380 5784 5640 238 302 63 24 chr11 21424221 21424347 -129359206 - L3 LINE CR1 -70 1507 1377 197 317 50 40 chr11 21424402 21424503 -129359050 + L2 LINE L2 2870 2971 -342 361 296 20 0 chr11 21424575 21424673 -129358880 - MIR SINE MIR -123 139 40 389 278 17 68 chr11 21424969 21425145 -129358408 - L3 LINE CR1 -613 964 798 232 224 61 0 chr11 21425149 21425198 -129358355 + MIR3 SINE MIR 132 183 -25 954 183 113 0 chr11 21425226 21425412 -129358141 + MER3 DNA MER1_type 1 207 -2 29 60 0 0 chr11 21425513 21425563 -129357990 + AT_rich Low_complexity Low_complexity 1 50 0 374 284 11 0 chr11 21425565 21425653 -129357900 - L2 LINE L2 -20 3252 3164 375 275 148 7 chr11 21425992 21426141 -129357412 - MLT1I LTR MaLR -142 267 98 222 37 0 0 chr11 21426481 21426508 -129357045 + (CA)n Simple_repeat Simple_repeat 2 28 0 2336 88 0 16 chr11 21427258 21427564 -129355989 - AluSg SINE Alu -9 301 1 1907 163 7 74 chr11 21427582 21428000 -129355553 - MLT1B LTR MaLR 0 390 1 319 118 59 0 chr11 21428217 21428268 -129355285 + L1MC4 LINE L1 6650 6703 -1339 * 361 240 0 52 chr11 21428244 21428340 -129355213 - L1MC4 LINE L1 -1339 6703 6613 965 275 53 20 chr11 21428395 21428748 -129354805 - MLT1I LTR MaLR 0 409 63 415 268 16 63 chr11 21428989 21429109 -129354444 + MIR SINE MIR 2 112 -150 2138 139 3 3 chr11 21429109 21429410 -129354143 - AluSx SINE Alu -11 301 1 415 268 16 63 chr11 21429410 21429477 -129354076 + MIR SINE MIR 112 181 -81 549 247 123 0 chr11 21429495 21429657 -129353896 + MIR SINE MIR 78 259 -3 296 235 0 0 chr11 21429667 21429735 -129353818 + MIR SINE MIR 184 251 -11 1719 129 109 34 chr11 21429888 21430237 -129353316 - THE1C LTR MaLR 0 375 1 9318 132 7 61 chr11 21430237 21431904 -129351649 - THE1C-int LTR MaLR 0 1580 4 1297 131 206 38 chr11 21431907 21432227 -129351326 - THE1C LTR MaLR 0 375 2 279 404 18 0 chr11 21432675 21432784 -129350769 - MIR3 SINE MIR -52 156 46 3423 129 27 2 chr11 21432835 21433386 -129350167 - L1PA16 LINE L1 -2 6164 5600 565 243 171 14 chr11 21433391 21433613 -129349940 - L1ME3A LINE L1 -9 6161 5905 7241 47 2 0 chr11 21433685 21434926 -129348627 - L1PA6 LINE L1 -2 6152 4913 5928 207 11 7 chr11 21434926 21436711 -129346842 - L1PA16 LINE L1 -545 5621 3830 252 167 0 0 chr11 21436741 21436789 -129346764 + (TCCA)n Simple_repeat Simple_repeat 3 50 0 198 283 0 0 chr11 21437552 21437598 -129345955 - MIR SINE MIR -63 145 100 191 276 250 32 chr11 21437807 21437963 -129345590 + L3b LINE CR1 1198 1387 -196 568 282 69 25 chr11 21438714 21438916 -129344637 + MIR SINE MIR 49 259 -3 411 287 16 16 chr11 21439932 21440054 -129343499 - L2 LINE L2 -5 3308 3187 * 449 308 0 2 chr11 21440050 21440165 -129343388 + MIR SINE MIR 49 162 -46 395 276 109 35 chr11 21440680 21440854 -129342699 - L2 LINE L2 -1 3312 3126 2210 259 78 102 chr11 21440860 21442338 -129341215 - L2 LINE L2 0 3313 1899 2660 104 5 8 chr11 21442338 21442712 -129340841 - THE1C LTR MaLR -2 373 1 2210 259 78 102 chr11 21442712 21443282 -129340271 - L2 LINE L2 -1414 1899 1317 249 210 12 49 chr11 21443808 21443851 -129339702 + CT-rich Low_complexity Low_complexity 5 45 -37 2202 112 0 0 chr11 21443851 21444138 -129339415 - AluSg SINE Alu -23 287 1 249 210 12 49 chr11 21444138 21444175 -129339378 + CT-rich Low_complexity Low_complexity 45 82 0 283 241 145 42 chr11 21444316 21444557 -129338996 + L1MC4 LINE L1 6796 7061 -981 423 252 34 27 chr11 21444575 21444722 -129338831 + MIR SINE MIR 84 231 -31 258 216 0 63 chr11 21444744 21444855 -129338698 + (TTA)n Simple_repeat Simple_repeat 2 105 0 188 291 47 55 chr11 21445001 21445128 -129338425 + L2 LINE L2 3159 3284 -29 231 252 29 12 chr11 21445684 21445768 -129337785 + MIR SINE MIR 15 102 -106 820 182 118 0 chr11 21446068 21446255 -129337298 - MER3 DNA MER1_type 0 209 1 471 280 76 0 chr11 21447050 21447182 -129336371 - L2 LINE L2 0 3313 3172 374 274 159 0 chr11 21447170 21447283 -129336270 - MIR SINE MIR 0 262 132 * 195 45 0 68 chr11 21447845 21447889 -129335664 + (TTTTA)n Simple_repeat Simple_repeat 2 42 0 734 167 0 0 chr11 21447892 21448006 -129335547 - FLAM_A SINE Alu -16 117 4 31093 36 1 2 chr11 21448276 21452279 -129331274 - L1P LINE L1 -987 5159 1164 7379 219 17 37 chr11 21452282 21454492 -129329061 - L1 LINE L1 -1002 5144 2978 578 280 13 36 chr11 21454494 21454719 -129328834 - MER57-int LTR ERV1 -999 6538 6319 1793 208 35 13 chr11 21454737 21455112 -129328441 - MER57A LTR ERV1 -12 391 9 198 331 55 107 chr11 21455561 21455833 -129327720 - L2 LINE L2 -23 3249 2992 190 343 56 28 chr11 21456508 21456616 -129326937 + MIR SINE MIR 86 196 -66 2345 94 18 51 chr11 21456656 21456940 -129326613 - L1PB1 LINE L1 -4 6147 5878 2310 103 0 25 chr11 21456940 21457259 -129326294 + AluSx SINE Alu 1 311 -1 2345 94 18 51 chr11 21457259 21457369 -129326184 - L1PB1 LINE L1 -273 5878 5766 801 98 0 0 chr11 21457369 21457471 -129326082 - AluSg/x SINE Alu -15 294 193 1974 124 17 3 chr11 21457573 21457863 -129325690 - AluSg SINE Alu -16 294 1 2604 96 10 5 chr11 21457864 21458262 -129325291 - L1PB1 LINE L1 -371 5780 5381 198 0 0 0 chr11 21458335 21458357 -129325196 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 2253 120 3 0 chr11 21458408 21458708 -129324845 + AluSg SINE Alu 1 301 -9 29392 54 8 4 chr11 21458727 21463023 -129320530 - L1PA5 LINE L1 -5 6149 1827 8913 32 2 4 chr11 21463023 21464889 -129318664 + L1PA4 LINE L1 4294 6155 0 29392 54 8 4 chr11 21464889 21465326 -129318227 - L1PA5 LINE L1 -4327 1827 1393 505 243 236 0 chr11 21466274 21466422 -129317131 - MER5A DNA MER1_type -3 186 4 2771 96 3 0 chr11 21466843 21467206 -129316347 - THE1B LTR MaLR 0 364 1 1970 145 3 3 chr11 21467463 21467752 -129315801 + AluSx SINE Alu 5 293 -19 1375 308 143 24 chr11 21467974 21468783 -129314770 + L2 LINE L2 2007 2912 -402 303 257 22 103 chr11 21468783 21468919 -129314634 - MLT1H LTR MaLR 0 549 425 233 282 28 14 chr11 21469093 21469164 -129314389 - MLT1I LTR MaLR -261 148 77 843 282 70 37 chr11 21469233 21469616 -129313937 + L2 LINE L2 2906 3301 -12 484 291 7 27 chr11 21470158 21470306 -129313247 - MIR3 SINE MIR -48 160 16 484 222 25 30 chr11 21470707 21470862 -129312691 + MIR SINE MIR 10 164 -62 369 0 0 0 chr11 21470956 21470997 -129312556 + (CA)n Simple_repeat Simple_repeat 1 41 0 688 103 43 0 chr11 21471838 21471955 -129311598 - MSTC LTR MaLR 0 428 307 * 816 172 7 7 chr11 21471951 21472102 -129311451 - MSTC LTR MaLR -277 151 1 180 391 0 0 chr11 21472475 21472539 -129311014 - L3b LINE CR1 -225 1358 1295 289 326 48 34 chr11 21472608 21472755 -129310798 + L2 LINE L2 2809 2957 -315 2582 132 9 29 chr11 21472796 21473250 -129310303 - L1PB3 LINE L1 0 6154 5710 708 35 0 0 chr11 21473263 21473350 -129310203 + (TCCA)n Simple_repeat Simple_repeat 4 90 0 516 343 35 0 chr11 21473352 21473495 -129310058 - L2 LINE L2 -9 3263 3116 1668 190 3 7 chr11 21473719 21474019 -129309534 + AluJo SINE Alu 12 310 -2 424 225 58 0 chr11 21474017 21474137 -129309416 - L1ME3 LINE L1 -6 6156 6030 3517 222 83 46 chr11 21474160 21474953 -129308600 - L1ME3 LINE L1 -204 5960 5198 255 29 29 0 chr11 21474953 21474988 -129308565 + (TTA)n Simple_repeat Simple_repeat 2 180 0 1660 172 3 24 chr11 21474988 21475278 -129308275 - AluJo SINE Alu -28 284 1 3517 222 83 46 chr11 21475278 21475414 -129308139 - L1ME3 LINE L1 -966 5198 5069 264 30 0 0 chr11 21475414 21475447 -129308106 + (TG)n Simple_repeat Simple_repeat 2 34 0 3517 222 83 46 chr11 21475447 21475867 -129307686 - L1ME3 LINE L1 -1095 5069 4666 1371 214 16 58 chr11 21475867 21476180 -129307373 - AluJo SINE Alu -12 300 1 3517 222 83 46 chr11 21476180 21476658 -129306895 - L1ME3 LINE L1 -1498 4666 3947 2293 85 3 0 chr11 21476658 21476964 -129306589 + AluSp SINE Alu 1 307 0 3517 222 83 46 chr11 21476964 21477015 -129306538 - L1ME3 LINE L1 -2217 3947 3899 199 305 71 88 chr11 21477522 21477761 -129305792 + L3 LINE CR1 49 283 -1294 1221 312 34 34 chr11 21478012 21478283 -129305270 - MLT1K LTR MaLR -40 548 275 231 36 0 0 chr11 21478283 21478311 -129305242 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 1221 312 34 34 chr11 21478311 21478575 -129304978 - MLT1K LTR MaLR -312 276 13 591 367 65 11 chr11 21478616 21478894 -129304659 + L3 LINE CR1 412 704 -873 527 288 42 119 chr11 21479720 21479936 -129303617 + L3 LINE CR1 707 938 -639 2338 110 7 0 chr11 21479936 21480246 -129303307 - AluSx SINE Alu 0 312 1 527 288 42 119 chr11 21480246 21480271 -129303282 + L3 LINE CR1 938 963 -614 2484 43 40 0 chr11 21480271 21480570 -129302983 - AluY SINE Alu 0 311 1 527 288 42 119 chr11 21480570 21480688 -129302865 + L3 LINE CR1 963 1039 -538 678 211 60 70 chr11 21480698 21480725 -129302828 - MER20 DNA MER1_type -22 197 171 2076 95 0 71 chr11 21480725 21481051 -129302502 - AluY SINE Alu -8 303 1 678 211 60 70 chr11 21481051 21481222 -129302331 - MER20 DNA MER1_type -48 171 1 476 249 59 35 chr11 21481226 21481395 -129302158 + L3 LINE CR1 1056 1228 -349 235 341 0 11 chr11 21481439 21481527 -129302026 + CT-rich Low_complexity Low_complexity 4 90 0 500 161 63 7 chr11 21481558 21481686 -129301867 - L1MB4 LINE L1 -16 6168 6032 1438 204 107 18 chr11 21482233 21482571 -129300982 - MLT1A2 LTR MaLR 0 374 7 374 345 35 11 chr11 21482865 21483039 -129300514 + L3 LINE CR1 1369 1546 -31 1036 194 75 0 chr11 21483040 21483241 -129300312 - MER20 DNA MER1_type -3 216 1 290 247 65 0 chr11 21483394 21483471 -129300082 - MIR SINE MIR -83 179 98 208 344 0 0 chr11 21487895 21487959 -129295594 - MIR SINE MIR -115 93 30 506 217 127 68 chr11 21488285 21488506 -129295047 - MER102b DNA MER1_type -3 338 105 340 141 127 0 chr11 21488540 21488611 -129294942 - L1MB2 LINE L1 -84 6087 6008 375 227 45 18 chr11 21488681 21488791 -129294762 + MER104 DNA Tc2 68 180 0 382 311 28 57 chr11 21488925 21489102 -129294451 - MER5B DNA MER1_type -5 173 2 1722 174 13 13 chr11 21489270 21489569 -129293984 + AluJo SINE Alu 1 299 -13 308 284 88 31 chr11 21489920 21490114 -129293439 - L2 LINE L2 -238 3034 2830 893 172 18 12 chr11 21490198 21490367 -129293186 - L1MB2 LINE L1 -2 6169 6000 819 157 0 11 chr11 21490521 21490885 -129292668 + C-rich Low_complexity Low_complexity 1 360 0 630 171 0 29 chr11 21491028 21491198 -129292355 + C-rich Low_complexity Low_complexity 3 167 0 488 199 11 39 chr11 21491208 21491389 -129292164 + CT-rich Low_complexity Low_complexity 3 178 0 675 220 8 30 chr11 21491398 21491530 -129292023 - FLAM_A SINE Alu -4 129 1 209 216 0 0 chr11 21491695 21491732 -129291821 + (TGAA)n Simple_repeat Simple_repeat 2 38 0 325 299 163 14 chr11 21492135 21492429 -129291124 - L1ME4a LINE L1 -38 6083 5746 280 291 182 9 chr11 21493031 21493141 -129290412 - L2 LINE L2 -1 3271 3143 2025 119 9 38 chr11 21493155 21493474 -129290079 + AluSq SINE Alu 1 310 -3 556 225 31 8 chr11 21493842 21493971 -129289582 + MIR SINE MIR 44 175 -87 247 189 0 19 chr11 21493986 21494039 -129289514 - L2 LINE L2 0 3313 3262 515 290 86 27 chr11 21494107 21494328 -129289225 + MIR SINE MIR 4 237 -25 381 326 163 31 chr11 21495078 21495366 -129288187 + L2 LINE L2 2942 3267 -5 225 0 0 0 chr11 21495497 21495522 -129288031 + (T)n Simple_repeat Simple_repeat 1 25 0 497 343 17 11 chr11 21496788 21496966 -129286587 - MIR3 SINE MIR -13 195 17 1316 288 133 42 chr11 21497440 21498479 -129285074 - L2 LINE L2 0 3313 2168 210 143 0 0 chr11 21498739 21498750 -129284803 + (TAA)n Simple_repeat Simple_repeat 1 11 -31 1847 125 7 46 chr11 21498750 21499053 -129284500 + AluJb SINE Alu 5 295 -17 210 143 0 0 chr11 21499053 21499083 -129284470 + (TAA)n Simple_repeat Simple_repeat 10 42 0 465 186 52 0 chr11 21499438 21499535 -129284018 - MIR3 SINE MIR -3 205 104 205 215 19 28 chr11 21500562 21500669 -129282884 + CT-rich Low_complexity Low_complexity 2 107 0 198 340 0 0 chr11 21501750 21501803 -129281750 - L2 LINE L2 -15 3257 3205 293 255 46 85 chr11 21502035 21502188 -129281365 - L2 LINE L2 -260 3012 2866 348 324 138 7 chr11 21502635 21502780 -129280773 + MIR SINE MIR 20 183 -79 2261 109 3 0 chr11 21503071 21503374 -129280179 + AluSq SINE Alu 1 304 -9 808 128 0 0 chr11 21503379 21503488 -129280065 - MER50-int LTR ERV1 -7096 109 1 1053 148 42 51 chr11 21503573 21503729 -129279824 - MER50 LTR ERV1 -23 711 556 2512 65 0 3 chr11 21503729 21504035 -129279518 + AluY SINE Alu 1 305 -6 1053 148 42 51 chr11 21504035 21504094 -129279459 - MER50 LTR ERV1 -178 556 498 5951 192 29 48 chr11 21504747 21506078 -129277475 - L1MB8 LINE L1 -60 6118 4864 7922 191 35 86 chr11 21506078 21507926 -129275627 - MER52A LTR ERV1 0 1755 1 5951 192 29 48 chr11 21507926 21509112 -129274441 - L1MB8 LINE L1 -1314 4864 3657 297 319 22 22 chr11 21509526 21509711 -129273842 - L1M4 LINE L1 -2157 3989 3805 792 320 97 35 chr11 21510204 21511079 -129272474 - L1M4 LINE L1 -2692 3454 2526 262 233 41 0 chr11 21511189 21511262 -129272291 - MLT1J2 LTR MaLR -371 79 4 189 184 0 0 chr11 21511366 21511404 -129272149 + L2 LINE L2 3271 3308 -5 210 290 0 32 chr11 21511602 21511664 -129271889 + MIR SINE MIR 189 248 -14 201 154 0 0 chr11 21511670 21511709 -129271844 + (ATG)n Simple_repeat Simple_repeat 1 39 0 349 319 12 30 chr11 21512864 21513030 -129270523 + MIR SINE MIR 30 192 -70 458 299 84 86 chr11 21513929 21514285 -129269268 - L2 LINE L2 -340 2974 2618 2580 49 0 7 chr11 21514285 21514591 -129268962 + AluY SINE Alu 1 304 -7 458 299 84 86 chr11 21514591 21514783 -129268770 - L2 LINE L2 -696 2618 2427 378 279 87 0 chr11 21515726 21515830 -129267723 + MIR SINE MIR 30 142 -66 453 310 139 67 chr11 21515835 21516280 -129267273 - L2 LINE L2 -1 3312 2836 339 25 0 0 chr11 21516652 21516692 -129266861 + (TATG)n Simple_repeat Simple_repeat 2 41 0 5352 140 18 27 chr11 21516696 21517658 -129265895 - L1PA16 LINE L1 -14 6152 5200 353 246 43 68 chr11 21517977 21518254 -129265299 + Charlie8 DNA MER1_type 75 427 -1990 202 261 0 0 chr11 21518331 21518377 -129265176 - MIR SINE MIR -167 95 50 19793 150 36 20 chr11 21518397 21520691 -129262862 - L1 LINE L1 -807 6758 4502 3632 69 14 2 chr11 21520691 21521128 -129262425 + MLT2A1 LTR ERVL 3 444 0 19793 150 36 20 chr11 21521128 21521258 -129262295 - L1 LINE L1 -3063 4502 4376 2020 124 0 0 chr11 21521258 21521525 -129262028 - AluSx SINE Alu -25 287 21 19793 150 36 20 chr11 21521525 21522521 -129261032 - L1 LINE L1 -3189 4376 3398 2049 103 59 7 chr11 21522521 21522811 -129260742 - AluY SINE Alu -6 305 1 19793 150 36 20 chr11 21522811 21523262 -129260291 - L1 LINE L1 -4167 3398 2956 339 44 0 0 chr11 21523262 21523307 -129260246 + (TG)n Simple_repeat Simple_repeat 2 46 0 19793 150 36 20 chr11 21523307 21523735 -129259818 - L1 LINE L1 -4609 2956 2536 207 0 0 0 chr11 21523735 21523758 -129259795 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 19793 150 36 20 chr11 21523758 21526102 -129257451 - L1 LINE L1 -5029 2536 10 8122 155 44 41 chr11 21526255 21527233 -129256320 - L1MA6 LINE L1 -12 6288 5314 4424 108 10 3 chr11 21527233 21527853 -129255700 - L1PB1 LINE L1 -2 6149 5526 8122 155 44 41 chr11 21527853 21529558 -129253995 - L1MA6 LINE L1 -986 5314 3561 2628 29 7 3 chr11 21529733 21530043 -129253510 + AluY SINE Alu 1 311 0 40 49 0 0 chr11 21530929 21530990 -129252563 + AT_rich Low_complexity Low_complexity 1 61 0 2441 77 3 0 chr11 21530990 21531300 -129252253 - AluY SINE Alu 0 311 1 12129 204 28 15 chr11 21531305 21532066 -129251487 - L1PA16 LINE L1 -9 6157 5408 183 42 0 0 chr11 21532066 21532090 -129251463 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 2009 97 0 70 chr11 21532090 21532389 -129251164 - AluSx SINE Alu -31 281 4 12129 204 28 15 chr11 21532389 21535421 -129248132 - L1PA16 LINE L1 -757 5409 2315 344 275 0 0 chr11 21535444 21535524 -129248029 - MIR SINE MIR -130 132 53 288 273 101 0 chr11 21535779 21535878 -129247675 - MER103 DNA DNA 0 166 58 646 296 56 5 chr11 21535878 21536094 -129247459 - MIR SINE MIR -34 228 2 232 298 0 0 chr11 21537354 21537401 -129246152 - L2 LINE L2 -21 3292 3246 975 302 69 35 chr11 21537469 21538045 -129245508 + L2 LINE L2 2702 3299 -14 404 254 9 27 chr11 21538063 21538173 -129245380 - L2 LINE L2 -189 3083 2976 194 297 40 14 chr11 21539682 21539756 -129243797 - L2 LINE L2 -252 3020 2945 2093 136 24 53 chr11 21540077 21540452 -129243101 - THE1B LTR MaLR 0 364 1 238 331 24 60 chr11 21540563 21540729 -129242824 - MER5B DNA MER1_type -16 162 3 284 287 37 19 chr11 21540878 21540986 -129242567 - MLT1J LTR MaLR -3 508 399 2474 137 11 21 chr11 21540986 21541365 -129242188 + THE1C LTR MaLR 1 375 0 5391 123 35 43 chr11 21541365 21542861 -129240692 + THE1C-int LTR MaLR 1 1580 0 2567 114 44 6 chr11 21542861 21543222 -129240331 + THE1C LTR MaLR 1 375 0 761 270 56 0 chr11 21543372 21543550 -129240003 - MLT1J LTR MaLR -320 191 4 772 274 58 80 chr11 21544422 21544783 -129238770 - MLT1J2 LTR MaLR -72 378 26 501 271 166 18 chr11 21545030 21545259 -129238294 + MIR SINE MIR 3 262 0 2152 221 37 39 chr11 21546082 21546227 -129237326 - L1MC4a LINE L1 0 7808 7664 2244 116 0 3 chr11 21546227 21546529 -129237024 - AluSg SINE Alu -9 301 1 2152 221 37 39 chr11 21546529 21546972 -129236581 - L1MC4a LINE L1 -144 7664 7221 1996 118 50 0 chr11 21546995 21547274 -129236279 + AluSc SINE Alu 1 293 -16 32 0 0 0 chr11 21547471 21547503 -129236050 + AT_rich Low_complexity Low_complexity 1 32 0 206 156 22 0 chr11 21547547 21547592 -129235961 + G-rich Low_complexity Low_complexity 5 50 0 290 306 108 29 chr11 21547832 21548135 -129235418 - L2 LINE L2 -191 3081 2768 893 172 18 12 chr11 21548144 21548313 -129235240 - L1MB2 LINE L1 -2 6169 6000 2145 129 0 3 chr11 21549079 21549382 -129234171 - AluSx SINE Alu -10 302 1 681 111 0 0 chr11 21549446 21549545 -129234008 - LTR12 LTR ERV1 0 714 616 318 236 11 0 chr11 21549549 21549638 -129233915 - LTR30 LTR ERV1 -80 642 553 1546 73 0 150 chr11 21549639 21549913 -129233640 - LTR12 LTR ERV1 -429 285 53 265 231 0 0 chr11 21549913 21549965 -129233588 - LTR30 LTR ERV1 -670 52 1 279 54 0 0 chr11 21550058 21550095 -129233458 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 759 227 153 61 chr11 21550095 21550294 -129233259 - L2 LINE L2 -13 3300 3064 195 42 0 0 chr11 21550294 21550318 -129233235 + (GA)n Simple_repeat Simple_repeat 1 24 0 759 227 153 61 chr11 21550318 21550413 -129233140 - L2 LINE L2 -249 3064 2979 626 254 114 40 chr11 21550425 21550653 -129232900 - MIR SINE MIR 0 262 18 2513 183 51 26 chr11 21550806 21551297 -129232256 + MLT1D LTR MaLR 1 503 -2 186 208 0 0 chr11 21551415 21551463 -129232090 + G-rich Low_complexity Low_complexity 4 51 0 191 228 148 10 chr11 21551613 21551714 -129231839 - L2 LINE L2 -1226 2088 1974 202 284 198 12 chr11 21551854 21551935 -129231618 + L2 LINE L2 3177 3272 0 373 311 34 7 chr11 21554706 21554854 -129228699 + MIR SINE MIR 65 216 -46 279 0 0 0 chr11 21554951 21554982 -129228571 + (TTCA)n Simple_repeat Simple_repeat 2 32 0 329 299 8 17 chr11 21555003 21555120 -129228433 - MIR SINE MIR -124 138 23 369 274 268 0 chr11 21555144 21555308 -129228245 + MIR SINE MIR 29 236 -26 714 275 34 50 chr11 21555634 21555828 -129227725 - MIR SINE MIR -3 259 69 2213 121 0 7 chr11 21555828 21556135 -129227418 - AluSx SINE Alu -7 305 1 714 275 34 50 chr11 21556135 21556202 -129227351 - MIR SINE MIR -193 69 2 278 270 0 27 chr11 21556302 21556376 -129227177 + CT-rich Low_complexity Low_complexity 1 72 0 302 294 137 71 chr11 21556438 21556775 -129226778 + L1M2 LINE L1 897 1255 -5594 1511 126 18 5 chr11 21556916 21557138 -129226415 - AluSx SINE Alu -87 225 1 1133 159 65 0 chr11 21557285 21557486 -129226067 - MSTB2 LTR MaLR -243 214 1 394 223 32 0 chr11 21557734 21557828 -129225725 + MER5A DNA MER1_type 9 105 -84 536 276 41 21 chr11 21558905 21559050 -129224503 + L2 LINE L2 3125 3272 0 197 293 52 0 chr11 21559226 21559284 -129224269 - MIR SINE MIR 0 262 202 438 314 41 6 chr11 21559618 21559790 -129223763 + MIR SINE MIR 77 254 -8 189 0 0 0 chr11 21559792 21559813 -129223740 + (TTA)n Simple_repeat Simple_repeat 2 22 0 1108 309 89 48 chr11 21559975 21560990 -129222563 - L2 LINE L2 0 3272 2227 1722 83 9 4 chr11 21561004 21561233 -129222320 + AluY SINE Alu 82 311 0 11036 181 66 49 chr11 21562173 21564151 -129219402 + L1MC3 LINE L1 4888 6939 -846 186 43 0 0 chr11 21564151 21564174 -129219379 + (CAAAA)n Simple_repeat Simple_repeat 1 23 0 11036 181 66 49 chr11 21564174 21565037 -129218516 + L1MC3 LINE L1 6939 7785 0 327 316 67 26 chr11 21566059 21566252 -129217301 - MIR SINE MIR -34 228 28 1447 224 171 36 chr11 21566823 21567346 -129216207 - MLT1G LTR MaLR 0 590 34 513 300 61 72 chr11 21567568 21567940 -129215613 - MLT1J2 LTR MaLR -37 413 28 243 362 19 29 chr11 21568323 21568428 -129215125 - MIR SINE MIR -71 137 34 2061 109 17 7 chr11 21568597 21568890 -129214663 + AluSx SINE Alu 1 296 -16 765 278 46 5 chr11 21569101 21569317 -129214236 + MIR SINE MIR 33 257 -5 343 186 54 0 chr11 21570064 21570193 -129213360 + (TA)n Simple_repeat Simple_repeat 1 136 0 22 0 0 0 chr11 21570235 21570257 -129213296 + AT_rich Low_complexity Low_complexity 1 22 0 464 316 238 3 chr11 21570451 21570733 -129212820 + L3 LINE CR1 820 1167 -410 214 290 116 0 chr11 21570798 21570867 -129212686 + L3 LINE CR1 1190 1266 -311 310 233 220 53 chr11 21571223 21571373 -129212180 - MER5A DNA MER1_type -1 188 14 333 264 194 7 chr11 21572097 21572241 -129211312 + MIR SINE MIR 80 250 -12 478 321 0 25 chr11 21576313 21576475 -129207078 + MER5B DNA MER1_type 4 161 -17 480 277 169 15 chr11 21576918 21577113 -129206440 - MIR SINE MIR -32 230 6 247 261 178 38 chr11 21577303 21577460 -129206093 - MIR SINE MIR -11 251 73 21 0 0 0 chr11 21579262 21579283 -129204270 + AT_rich Low_complexity Low_complexity 1 21 0 9255 154 24 23 chr11 21580119 21580440 -129203113 - L1M1 LINE L1 -4369 3196 2877 339 44 0 0 chr11 21580440 21580485 -129203068 + (TG)n Simple_repeat Simple_repeat 2 46 0 9255 154 24 23 chr11 21580485 21581911 -129201642 - L1M1 LINE L1 -4688 2877 1448 370 233 9 60 chr11 21582725 21582841 -129200712 + MIR3 SINE MIR 84 193 -15 198 0 0 0 chr11 21584671 21584693 -129198860 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 1958 149 313 23 chr11 21585718 21586194 -129197359 + LTR18B LTR ERVL 1 614 0 1618 191 14 0 chr11 21586200 21586488 -129197065 + HERVL18 LTR ERVL 1 292 -5755 5355 178 9 6 chr11 21586510 21587366 -129196187 + HERVL18 LTR ERVL 2718 3576 -2471 4610 135 8 8 chr11 21587371 21588039 -129195514 + HERVL18 LTR ERVL 4394 5061 -986 182 338 28 14 chr11 21588764 21588835 -129194718 + L2 LINE L2 2764 2835 -479 294 250 177 57 chr11 21589064 21589188 -129194365 + L2 LINE L2 3134 3272 0 207 200 59 82 chr11 21589275 21589360 -129194193 + MIR SINE MIR 110 192 -70 611 271 101 10 chr11 21590550 21590757 -129192796 + MIR SINE MIR 1 226 -36 1646 159 16 32 chr11 21590991 21591299 -129192254 - L1MC1 LINE L1 -17 6316 6014 10035 45 11 115 chr11 21591307 21592840 -129190713 - SVA Other Other 0 1386 13 1256 177 23 8 chr11 21592888 21593153 -129190400 - L1MA8 LINE L1 -17 6274 6006 639 280 95 4 chr11 21594148 21594391 -129189162 + LTR33 LTR ERVL 10 274 -247 332 367 8 0 chr11 21594607 21594735 -129188818 + MIR SINE MIR 37 165 -97 362 253 13 0 chr11 21595578 21595657 -129187896 + L2 LINE L2 3234 3313 0 394 248 190 0 chr11 21595960 21596097 -129187456 + MIR SINE MIR 100 262 0 296 280 112 16 chr11 21596186 21596311 -129187242 + MIR3 SINE MIR 42 178 -30 372 287 80 93 chr11 21596722 21596959 -129186594 - MIR SINE MIR -10 252 19 1688 141 33 10 chr11 21596961 21597266 -129186287 + L1MB4 LINE L1 5869 6180 0 281 97 10 194 chr11 21597274 21597377 -129186176 + L1MB8 LINE L1 6094 6177 -1 269 281 72 44 chr11 21597389 21597638 -129185915 + HAL1b LINE L1 231 486 -862 199 359 0 0 chr11 21598296 21598360 -129185193 - L2 LINE L2 -21 3251 3188 270 227 45 0 chr11 21598563 21598629 -129184924 - MLT1K LTR MaLR 0 588 520 220 343 50 36 chr11 21598845 21598985 -129184568 - MIR SINE MIR -109 153 12 480 278 83 7 chr11 21599893 21600037 -129183516 - LTR33 LTR ERVL -363 158 4 21 36 0 0 chr11 21600116 21600144 -129183409 + AT_rich Low_complexity Low_complexity 1 28 0 273 119 15 30 chr11 21600150 21600217 -129183336 + (TCTA)n Simple_repeat Simple_repeat 3 68 0 435 65 0 0 chr11 21600528 21600590 -129182963 + Alu SINE Alu 246 307 -4 1782 158 0 24 chr11 21600716 21601014 -129182539 - AluJb SINE Alu -10 302 12 378 0 0 0 chr11 21601217 21601259 -129182294 + (TG)n Simple_repeat Simple_repeat 2 43 0 243 222 0 0 chr11 21601503 21601548 -129182005 + L3 LINE CR1 1521 1565 -12 375 270 74 34 chr11 21602119 21602267 -129181286 - MIR SINE MIR -89 173 20 1884 152 10 3 chr11 21602313 21602610 -129180943 - AluJo SINE Alu -13 299 1 2310 96 0 0 chr11 21602621 21602913 -129180640 - AluSq SINE Alu -21 292 1 271 295 156 8 chr11 21602977 21603099 -129180454 + MIR SINE MIR 47 186 -76 1360 301 84 38 chr11 21603197 21603968 -129179585 - L3 LINE CR1 -98 1479 673 592 200 0 0 chr11 21603968 21604053 -129179500 + FLAM_A SINE Alu 1 85 -57 524 100 0 0 chr11 21604061 21604131 -129179422 + L1MA2 LINE L1 6231 6300 -4 2187 68 11 4 chr11 21605030 21605341 -129178212 + AluY SINE Alu 2 314 0 2489 60 3 0 chr11 21606624 21606924 -129176629 + AluY SINE Alu 1 301 -10 250 354 63 8 chr11 21607353 21607480 -129176073 - L2 LINE L2 -1 3312 3179 539 337 47 5 chr11 21608930 21609123 -129174430 - MIR SINE MIR -61 201 1 722 252 103 93 chr11 21609240 21609637 -129173916 - MLT1J2 LTR MaLR -46 404 4 526 281 190 14 chr11 21609940 21610161 -129173392 + MIR SINE MIR 2 261 -1 242 303 82 109 chr11 21610166 21610470 -129173083 + L2 LINE L2 2976 3271 -1 1856 216 41 52 chr11 21610966 21611527 -129172026 - L1MC4 LINE L1 -2 8040 7486 213 175 0 0 chr11 21611924 21611964 -129171589 - L2 LINE L2 0 3313 3274 349 312 9 9 chr11 21613317 21613426 -129170127 + L2 LINE L2 3203 3311 -2 307 331 13 43 chr11 21613550 21613728 -129169825 + MIR3 SINE MIR 6 181 -65 446 229 185 19 chr11 21614195 21614352 -129169201 - MIR SINE MIR -1 261 79 1693 138 16 0 chr11 21614547 21614801 -129168752 + L1PA16 LINE L1 5889 6146 -20 21 36 0 0 chr11 21614854 21614882 -129168671 + AT_rich Low_complexity Low_complexity 1 28 0 587 287 32 11 chr11 21614925 21615113 -129168440 + L1MEd LINE L1 4 195 -5924 22 0 0 0 chr11 21615132 21615154 -129168399 + AT_rich Low_complexity Low_complexity 1 22 0 1777 56 82 17 chr11 21615163 21615396 -129168157 + L1PA6 LINE L1 5907 6154 0 2779 207 43 25 chr11 21615399 21616031 -129167522 - L1ME1 LINE L1 -10 6156 5514 440 261 115 100 chr11 21616157 21616819 -129166734 + L1MEd LINE L1 415 1086 -5033 28 29 0 0 chr11 21616971 21617006 -129166547 + AT_rich Low_complexity Low_complexity 1 35 0 670 266 96 65 chr11 21617208 21617667 -129165886 - MLT1H LTR MaLR -37 512 40 504 300 37 31 chr11 21617700 21618063 -129165490 + L1MEd LINE L1 1281 1621 -869 28 61 0 0 chr11 21618142 21618191 -129165362 + AT_rich Low_complexity Low_complexity 1 49 0 1084 138 0 0 chr11 21618198 21618357 -129165196 + L1P3 LINE L1 79 237 -5638 11751 181 7 31 chr11 21618362 21620892 -129162661 + L1P3 LINE L1 794 3281 -3180 5109 82 10 44 chr11 21620891 21621197 -129162356 + L1PA8A LINE L1 5403 5718 -413 * 2361 100 0 0 chr11 21621197 21621496 -129162057 + AluSg SINE Alu 1 299 -11 5109 82 10 44 chr11 21621496 21621916 -129161637 + L1PA8A LINE L1 5718 6104 -27 53 0 0 0 chr11 21621918 21621971 -129161582 + AT_rich Low_complexity Low_complexity 1 53 0 1230 312 40 21 chr11 21622581 21623377 -129160176 + L1ME LINE L1 4893 5701 -469 1471 115 0 102 chr11 21623528 21623688 -129159865 - L1MA4A LINE L1 -262 6041 5925 2337 76 0 10 chr11 21623688 21623989 -129159564 - AluSg1 SINE Alu -11 298 1 1471 115 0 102 chr11 21623989 21624132 -129159421 - L1MA4A LINE L1 -378 5925 5769 4423 104 23 2 chr11 21624179 21624797 -129158756 - L1PB2 LINE L1 -7 6144 5514 * 10669 32 0 2 chr11 21624796 21626764 -129156789 + L1PA4 LINE L1 4191 6152 -3 1122 87 17 12 chr11 21624797 21626929 -129156624 - L1P5 LINE L1 -623 5528 5360 484 93 39 9 chr11 21626917 21627010 -129156543 - L1MA4A LINE L1 -494 5797 5706 * 313 235 52 26 chr11 21627051 21627166 -129156387 + L1ME3A LINE L1 6045 6162 -8 1880 288 85 49 chr11 21627202 21628139 -129155414 + L1ME LINE L1 2509 3411 -2735 1923 251 61 15 chr11 21628139 21628662 -129154891 - MLT1H LTR MaLR 0 549 3 1880 288 85 49 chr11 21628662 21629971 -129153582 + L1ME LINE L1 3411 4835 -1311 22 35 0 0 chr11 21630074 21630103 -129153450 + AT_rich Low_complexity Low_complexity 1 29 0 413 248 34 63 chr11 21630166 21630372 -129153181 + L1ME LINE L1 4963 5162 -984 639 300 43 35 chr11 21630469 21630955 -129152598 + L1ME LINE L1 5307 5783 -379 252 200 0 0 chr11 21631325 21631380 -129152173 + (TA)n Simple_repeat Simple_repeat 1 55 0 243 382 45 45 chr11 21631543 21631721 -129151832 - MER5A DNA MER1_type -3 186 9 328 212 0 0 chr11 21631844 21631910 -129151643 - MER5A DNA MER1_type -1 188 123 486 288 46 50 chr11 21631910 21632212 -129151341 + L1MB4 LINE L1 5 305 -6237 580 177 15 31 chr11 21632279 21632409 -129151144 + L1PA8 LINE L1 6045 6172 0 974 149 5 11 chr11 21632431 21632619 -129150934 + L1MA4 LINE L1 6110 6296 -4 3061 230 43 32 chr11 21632734 21633000 -129150553 + L1MB4 LINE L1 612 874 -5772 1642 204 3 37 chr11 21633000 21633323 -129150230 - AluJo SINE Alu 0 312 1 3061 230 43 32 chr11 21633323 21634326 -129149227 + L1MB4 LINE L1 874 1849 -4797 3318 226 23 23 chr11 21634331 21635262 -129148291 + L1MB4 LINE L1 3804 4734 -1910 * 3542 178 47 73 chr11 21635259 21635850 -129147703 + L1MB4 LINE L1 5448 6001 -677 5873 107 13 6 chr11 21635850 21636876 -129146677 + L1PA8A LINE L1 5098 6130 -1 3542 178 47 73 chr11 21636876 21637509 -129146044 + L1MB4 LINE L1 6001 6649 -29 563 252 24 0 chr11 21637521 21637644 -129145909 - MER5A DNA MER1_type -52 137 12 336 271 20 86 chr11 21637842 21637993 -129145560 + L2 LINE L2 2811 2951 -363 239 125 0 0 chr11 21638029 21638069 -129145484 - L1PA10 LINE L1 -7 6161 6122 1273 246 101 37 chr11 21638114 21638630 -129144923 - MLT1H LTR MaLR 0 549 1 550 241 8 0 chr11 21638692 21638825 -129144728 + MER45A DNA AcHobo 1 134 -44 265 271 171 16 chr11 21638861 21638990 -129144563 + L2 LINE L2 3165 3313 0 572 289 60 39 chr11 21639440 21639672 -129143881 - MIR SINE MIR -6 256 20 236 150 0 0 chr11 21639668 21639708 -129143845 - L2 LINE L2 -2 3311 3272 * 3112 132 62 11 chr11 21642341 21642902 -129140651 - MER4B LTR ERV1 -20 590 1 572 255 33 38 chr11 21643476 21643660 -129139893 + MER5A DNA MER1_type 7 189 0 35 0 0 0 chr11 21643884 21643919 -129139634 + AT_rich Low_complexity Low_complexity 1 35 0 260 233 41 14 chr11 21644811 21644884 -129138669 - MER81 DNA DNA -2 112 38 180 0 0 0 chr11 21644923 21644943 -129138610 + (TTA)n Simple_repeat Simple_repeat 2 21 0 498 273 55 38 chr11 21645002 21645185 -129138368 - MIR3 SINE MIR -3 205 20 2271 128 16 25 chr11 21646623 21646990 -129136563 - THE1B LTR MaLR 0 364 1 21 0 0 0 chr11 21647061 21647082 -129136471 + AT_rich Low_complexity Low_complexity 1 21 0 21 89 0 0 chr11 21647369 21647425 -129136128 + AT_rich Low_complexity Low_complexity 1 56 0 447 333 43 0 chr11 21648080 21648218 -129135335 - L2 LINE L2 -2 3270 3127 547 249 19 56 chr11 21649221 21649434 -129134119 - MER58C DNA MER1_type -6 209 5 502 290 70 20 chr11 21649469 21649669 -129133884 - MIR SINE MIR -21 241 32 477 336 64 70 chr11 21650170 21650640 -129132913 - L1MEd LINE L1 -5649 470 4 367 324 16 44 chr11 21650880 21651062 -129132491 + MIR SINE MIR 5 181 -81 724 213 103 55 chr11 21653050 21653323 -129130230 - MER2 DNA MER2_type -22 323 38 1660 159 23 36 chr11 21653468 21653769 -129129784 - AluSq SINE Alu -16 297 1 545 306 190 21 chr11 21654397 21654786 -129128767 + L3 LINE CR1 1051 1505 -72 240 236 167 35 chr11 21656811 21656955 -129126598 - MIR SINE MIR -9 253 91 646 298 62 13 chr11 21657147 21657372 -129126181 - MIR SINE MIR -12 250 15 2448 85 7 0 chr11 21657873 21658179 -129125374 + AluSx SINE Alu 1 308 -4 766 276 80 32 chr11 21658329 21658857 -129124696 - L1ME4a LINE L1 -1 6120 5568 572 165 66 0 chr11 21659634 21659755 -129123798 + L1MA8 LINE L1 6159 6287 -4 21 0 0 0 chr11 21659755 21659776 -129123777 + AT_rich Low_complexity Low_complexity 1 21 0 344 224 0 56 chr11 21659790 21659897 -129123656 - L1M4 LINE L1 -3903 2243 2143 265 299 19 28 chr11 21660341 21660448 -129123105 + MER5A DNA MER1_type 32 137 -52 857 219 66 31 chr11 21660739 21660967 -129122586 - MIR SINE MIR -11 251 16 225 378 0 0 chr11 21661124 21661222 -129122331 - L2 LINE L2 -240 3032 2935 207 297 93 8 chr11 21661634 21661752 -129121801 - L2 LINE L2 -862 2452 2325 372 319 83 56 chr11 21663673 21664260 -129119293 - L2 LINE L2 -346 2968 2366 1007 283 80 20 chr11 21664266 21664665 -129118888 - LTR16A LTR ERVL 0 450 28 313 273 102 28 chr11 21664875 21665051 -129118502 + L2 LINE L2 3125 3313 0 225 296 104 16 chr11 21665067 21665192 -129118361 - MIR3 SINE MIR -7 201 66 630 244 95 143 chr11 21666605 21667122 -129116431 - L2 LINE L2 -6 3307 2816 386 20 20 0 chr11 21667172 21667223 -129116330 + (TC)n Simple_repeat Simple_repeat 2 53 0 234 150 0 0 chr11 21667223 21667263 -129116290 + (TG)n Simple_repeat Simple_repeat 2 41 0 275 243 39 29 chr11 21667547 21667650 -129115903 - LTR67 LTR ERVL -24 533 430 229 284 92 9 chr11 21668251 21668360 -129115193 - MLT1F LTR MaLR -106 436 319 303 146 0 0 chr11 21668434 21668489 -129115064 + (TCCC)n Simple_repeat Simple_repeat 3 57 0 2049 116 32 0 chr11 21668546 21668830 -129114723 - AluSg SINE Alu -17 293 1 484 246 122 44 chr11 21668835 21669092 -129114461 - MLT1F LTR MaLR -289 266 1 2131 110 0 3 chr11 21669137 21669450 -129114103 + AluSx SINE Alu 1 312 0 411 323 23 0 chr11 21669502 21669632 -129113921 - L3 LINE CR1 -166 1411 1279 262 265 78 49 chr11 21669632 21669734 -129113819 + MIR SINE MIR 1 105 -157 341 301 0 0 chr11 21670812 21670915 -129112638 + MIR SINE MIR 160 262 0 23 0 0 0 chr11 21671337 21671360 -129112193 + AT_rich Low_complexity Low_complexity 1 23 0 480 232 118 119 chr11 21671525 21671615 -129111938 - MIR SINE MIR 0 262 173 1980 106 4 14 chr11 21671615 21671890 -129111663 + AluSc SINE Alu 32 303 -6 480 232 118 119 chr11 21671890 21672060 -129111493 - MIR SINE MIR -89 173 2 605 212 14 7 chr11 21672334 21672480 -129111073 + MER105 DNA DNA 34 180 -24 282 183 72 45 chr11 21673239 21673354 -129110199 - L1ME4a LINE L1 -2 6079 1234 793 267 17 13 chr11 21673385 21673621 -129109932 - LTR16A1 LTR ERVL 0 457 221 505 287 69 29 chr11 21675184 21675358 -129108195 - MER63A DNA MER1_type -29 181 1 661 274 25 0 chr11 21675922 21676079 -129107474 + MIR SINE MIR 101 261 -1 36 23 0 0 chr11 21676363 21676406 -129107147 + AT_rich Low_complexity Low_complexity 1 43 0 1814 155 0 34 chr11 21676407 21676703 -129106850 - AluJo SINE Alu -26 286 1 1585 110 77 7 chr11 21676705 21677004 -129106549 - L1MA4 LINE L1 0 6300 5981 192 264 139 0 chr11 21677011 21677083 -129106470 + L2 LINE L2 2993 3074 -198 1395 131 84 7 chr11 21677280 21677577 -129105976 - L1MA4 LINE L1 0 6300 5981 189 0 0 0 chr11 21677690 21677711 -129105842 + (A)n Simple_repeat Simple_repeat 1 21 0 598 238 44 6 chr11 21677902 21678083 -129105470 - MER58A DNA MER1_type -1 223 36 294 304 98 9 chr11 21682805 21682917 -129100636 + L2 LINE L2 3181 3302 -11 565 179 34 162 chr11 21682952 21683186 -129100367 + MIR SINE MIR 56 259 -3 218 320 13 13 chr11 21684334 21684412 -129099141 + MIR SINE MIR 5 82 -180 412 260 16 16 chr11 21684513 21684636 -129098917 - MIR SINE MIR -2 260 138 2266 109 0 0 chr11 21684863 21685157 -129098396 + AluSg SINE Alu 1 294 -16 2498 67 0 0 chr11 21685289 21685588 -129097965 + AluY SINE Alu 1 299 -12 230 333 108 21 chr11 21685619 21685712 -129097841 - MIR SINE MIR -90 118 18 1165 288 75 53 chr11 21686092 21687060 -129096493 + L1MEd LINE L1 328 1362 -4948 1791 164 17 0 chr11 21687060 21687352 -129096201 + AluJo SINE Alu 1 297 -15 1165 288 75 53 chr11 21687352 21687603 -129095950 + L1MEd LINE L1 1362 1606 -4704 230 262 48 12 chr11 21687713 21687797 -129095756 + L1ME LINE L1 5667 5753 -409 626 146 9 9 chr11 21687805 21687915 -129095638 - Tigger1 DNA MER2_type -1 2417 2308 456 153 153 0 chr11 21687918 21688016 -129095537 - Tigger1 DNA MER2_type -419 1999 1887 4051 121 18 12 chr11 21688082 21688742 -129094811 + L1PB1 LINE L1 5485 6148 -3 31 88 0 0 chr11 21688980 21689060 -129094493 + AT_rich Low_complexity Low_complexity 1 80 0 1196 218 4 13 chr11 21690542 21690781 -129092772 - MER8 DNA MER2_type -1 238 2 30 45 0 0 chr11 21690930 21690974 -129092579 + AT_rich Low_complexity Low_complexity 1 44 0 325 304 67 7 chr11 21691961 21692096 -129091457 - MLT1L LTR MaLR -165 450 308 752 273 39 43 chr11 21693650 21693906 -129089647 + MLT1I LTR MaLR 112 366 -43 923 205 95 15 chr11 21695026 21695352 -129088201 - MSTD LTR MaLR 0 396 1 188 65 0 32 chr11 21695955 21695986 -129087567 + (TTTTG)n Simple_repeat Simple_repeat 3 32 0 21 57 0 0 chr11 21696259 21696294 -129087259 + AT_rich Low_complexity Low_complexity 1 35 0 1240 309 110 28 chr11 21696419 21697282 -129086271 + L2 LINE L2 2398 3312 -1 198 0 0 0 chr11 21697282 21697304 -129086249 + (GGAA)n Simple_repeat Simple_repeat 4 25 0 734 226 198 12 chr11 21697652 21697909 -129085644 - MLT1J2 LTR MaLR -122 328 24 387 0 0 0 chr11 21698978 21699021 -129084532 + (TCCA)n Simple_repeat Simple_repeat 2 44 0 348 322 35 0 chr11 21699101 21699216 -129084337 + MER91C DNA MER1_type 21 139 -1 401 351 74 74 chr11 21699257 21699622 -129083931 - L2 LINE L2 -2 3270 2906 265 149 15 45 chr11 21699770 21699837 -129083716 + Charlie7 DNA MER1_type 41 105 -2507 265 327 107 27 chr11 21700550 21700700 -129082853 + MIR SINE MIR 3 164 -98 3001 69 0 12 chr11 21700724 21701128 -129082425 + L1PA8 LINE L1 5767 6165 -7 361 343 144 3 chr11 21701522 21701834 -129081719 - L2 LINE L2 -398 2916 2561 2416 98 3 0 chr11 21702026 21702332 -129081221 - AluSp SINE Alu -6 307 1 244 311 107 10 chr11 21702369 21702472 -129081081 + L2 LINE L2 3159 3271 -1 588 236 0 8 chr11 21703001 21703124 -129080429 + L2 LINE L2 3191 3312 -1 209 205 64 64 chr11 21703262 21703340 -129080213 - MIR SINE MIR -153 109 32 2028 122 3 23 chr11 21703936 21704240 -129079313 - AluSx SINE Alu -14 298 1 33 25 0 0 chr11 21704423 21704463 -129079090 + AT_rich Low_complexity Low_complexity 1 40 0 449 135 80 0 chr11 21704467 21704630 -129078923 + (TA)n Simple_repeat Simple_repeat 1 176 0 569 121 58 17 chr11 21704667 21704840 -129078713 + (TA)n Simple_repeat Simple_repeat 1 180 0 305 211 56 33 chr11 21704847 21704937 -129078616 - L1MC4 LINE L1 -1339 6703 6612 338 181 38 0 chr11 21704943 21705048 -129078505 + (TA)n Simple_repeat Simple_repeat 2 110 0 235 239 0 54 chr11 21705048 21705140 -129078413 - L1MC4 LINE L1 -1340 6702 6616 347 184 27 41 chr11 21706043 21706171 -129077382 - MIR SINE MIR -50 212 88 2331 80 3 3 chr11 21706189 21706488 -129077065 - AluY SINE Alu -12 299 1 415 296 17 9 chr11 21706603 21706718 -129076835 + L2 LINE L2 3198 3313 0 421 290 0 10 chr11 21706824 21706924 -129076629 - MIR SINE MIR -108 154 56 196 333 148 0 chr11 21707231 21707312 -129076241 - MIR SINE MIR -98 164 72 205 176 0 0 chr11 21708286 21708320 -129075233 + (TG)n Simple_repeat Simple_repeat 2 35 0 213 339 18 0 chr11 21709067 21709123 -129074430 - L2 LINE L2 -19 3253 3197 611 287 91 23 chr11 21709773 21710038 -129073515 + MLT1I LTR MaLR 100 382 -27 585 312 85 68 chr11 21710699 21711273 -129072280 - MLT1K LTR MaLR 0 588 5 272 301 146 24 chr11 21711333 21711456 -129072097 + MIR3 SINE MIR 6 143 -65 235 317 208 0 chr11 21711537 21711638 -129071915 - MIR3 SINE MIR -45 163 42 247 276 86 29 chr11 21711937 21712042 -129071511 + MIR SINE MIR 2 112 -150 440 375 92 19 chr11 21712361 21712884 -129070669 + L2 LINE L2 2334 2894 -420 183 300 0 33 chr11 21713147 21713207 -129070346 + L2 LINE L2 3242 3299 -14 516 268 76 13 chr11 21713241 21713398 -129070155 + MIR SINE MIR 31 197 -65 716 205 70 60 chr11 21715438 21715623 -129067930 - MER5A DNA MER1_type -2 187 1 697 266 34 34 chr11 21716205 21716281 -129067272 + MIR SINE MIR 25 100 -162 2656 91 13 11 chr11 21716281 21716653 -129066900 - THE1C LTR MaLR -2 373 1 697 266 34 34 chr11 21716653 21716783 -129066770 + MIR SINE MIR 99 231 -31 301 277 0 43 chr11 21717268 21717362 -129066191 - L1MC4 LINE L1 -1337 6705 6616 232 213 100 0 chr11 21717380 21717460 -129066093 - L1MC4 LINE L1 -1339 6703 6616 2166 89 45 3 chr11 21717519 21717811 -129065742 - AluY SINE Alu -7 304 1 376 283 0 58 chr11 21717848 21717968 -129065585 + MIR SINE MIR 31 143 -119 348 296 51 0 chr11 21717987 21718085 -129065468 - MIR SINE MIR -140 122 20 2425 66 0 16 chr11 21718634 21718939 -129064614 + AluY SINE Alu 1 300 -11 367 299 85 30 chr11 21720332 21720496 -129063057 - MIR SINE MIR -70 192 20 180 0 0 0 chr11 21720915 21720935 -129062618 + (A)n Simple_repeat Simple_repeat 1 20 0 276 247 52 13 chr11 21721347 21721424 -129062129 - MIR3 SINE MIR -25 183 104 186 292 21 83 chr11 21721415 21721511 -129062042 + MIR SINE MIR 36 125 -83 * 2081 78 4 11 chr11 21721633 21721903 -129061650 - AluSc SINE Alu -8 301 34 201 351 0 0 chr11 21722081 21722138 -129061415 + L2 LINE L2 3034 3090 -182 2102 140 6 26 chr11 21722449 21722800 -129060753 + MER2 DNA MER2_type 1 344 0 2071 91 24 11 chr11 21724223 21724510 -129059043 + AluSg SINE Alu 1 291 -19 1014 191 18 28 chr11 21726335 21726618 -129056935 + L1MD3 LINE L1 7715 7994 -1 1715 172 60 0 chr11 21726633 21726918 -129056635 + AluJo SINE Alu 4 305 -7 22 0 0 0 chr11 21726920 21726942 -129056611 + AT_rich Low_complexity Low_complexity 1 22 0 22 56 0 0 chr11 21727044 21727080 -129056473 + AT_rich Low_complexity Low_complexity 1 36 0 717 22 0 0 chr11 21729111 21729200 -129054353 + L1PA2 LINE L1 6065 6153 -2 276 146 0 0 chr11 21729763 21729804 -129053749 - 5S rRNA rRNA -80 41 1 670 47 0 0 chr11 21729804 21729889 -129053664 - 5S rRNA rRNA -2 119 35 235 301 125 22 chr11 21730873 21731009 -129052544 - LTR16B LTR ERVL -269 195 46 25 65 0 0 chr11 21731881 21731927 -129051626 + AT_rich Low_complexity Low_complexity 1 46 0 279 262 97 58 chr11 21732017 21732120 -129051433 - L2 LINE L2 -8 3264 3158 385 356 83 11 chr11 21732369 21732549 -129051004 - MIR3 SINE MIR -10 198 6 33 0 0 0 chr11 21732696 21732729 -129050824 + AT_rich Low_complexity Low_complexity 1 33 0 259 295 105 19 chr11 21733092 21733197 -129050356 + L2 LINE L2 3141 3254 -18 36 53 0 0 chr11 21733251 21733308 -129050245 + AT_rich Low_complexity Low_complexity 1 57 0 24 0 0 0 chr11 21733748 21733772 -129049781 + AT_rich Low_complexity Low_complexity 1 24 0 470 285 65 48 chr11 21734802 21734988 -129048565 + MIR SINE MIR 4 192 -70 1162 181 209 17 chr11 21735057 21735416 -129048137 + MSTC LTR MaLR 1 428 0 339 78 0 0 chr11 21736300 21736351 -129047202 + (CA)n Simple_repeat Simple_repeat 2 52 0 392 318 93 0 chr11 21736896 21737047 -129046506 - MIR3 SINE MIR -10 198 34 295 357 48 8 chr11 21738222 21738348 -129045205 - L2 LINE L2 0 3272 3142 287 262 135 29 chr11 21739079 21739323 -129044230 - HAL1 LINE L1 -49 2458 2189 210 347 93 20 chr11 21739433 21739583 -129043970 + MIR SINE MIR 57 217 -45 732 282 117 43 chr11 21740210 21740604 -129042949 - LTR16A LTR ERVL 0 450 28 2888 199 8 72 chr11 21741413 21742151 -129041402 - LTR8 LTR ERV1 0 691 1 1924 154 76 19 chr11 21742510 21742933 -129040620 - L1MC3 LINE L1 0 7785 7339 581 135 36 0 chr11 21742930 21743041 -129040512 - L1MC3 LINE L1 -779 7006 6892 * 308 318 103 0 chr11 21743558 21743665 -129039888 + L2 LINE L2 3154 3271 -1 208 357 20 77 chr11 21745327 21745631 -129037922 + L2 LINE L2 2776 3060 -212 361 303 34 25 chr11 21745779 21745898 -129037655 + MIR SINE MIR 8 127 -135 355 303 38 15 chr11 21746029 21746161 -129037392 + MLT2E LTR ERVL 38 172 -456 212 382 24 0 chr11 21746842 21746965 -129036588 + L2 LINE L2 2866 2991 -281 456 285 11 37 chr11 21747960 21748150 -129035403 + MIR SINE MIR 4 189 -65 986 207 5 28 chr11 21748432 21748649 -129034904 + MER20 DNA MER1_type 4 215 -4 596 259 68 76 chr11 21748885 21749136 -129034417 + MIR SINE MIR 12 260 -2 333 0 0 0 chr11 21749936 21749973 -129033580 + (CA)n Simple_repeat Simple_repeat 2 38 0 1088 161 20 5 chr11 21750835 21751034 -129032519 - MER20 DNA MER1_type -7 212 11 354 315 8 0 chr11 21751170 21751297 -129032256 - MER94 DNA DNA -6 128 1 235 186 29 71 chr11 21751327 21751397 -129032156 - MIR SINE MIR -124 138 72 366 297 132 11 chr11 21751573 21751783 -129031770 + MIR SINE MIR 15 255 -7 274 270 27 14 chr11 21752154 21752228 -129031325 + MIR3 SINE MIR 83 157 -51 240 237 35 26 chr11 21752365 21752479 -129031074 + L1ME4a LINE L1 6002 6116 -5 345 250 142 8 chr11 21753426 21753546 -129030007 + MIR SINE MIR 127 262 0 284 281 123 0 chr11 21753875 21753989 -129029564 - L2 LINE L2 0 3272 3145 585 256 68 32 chr11 21754141 21754391 -129029162 - MIR SINE MIR -1 261 3 2336 272 126 26 chr11 21754469 21755603 -129027950 + L2 LINE L2 2059 3313 0 513 287 22 22 chr11 21755605 21755786 -129027767 - MIR SINE MIR -17 245 65 531 0 0 0 chr11 21756207 21756266 -129027287 + (TTTAG)n Simple_repeat Simple_repeat 5 63 0 413 303 17 25 chr11 21757112 21757231 -129026322 - MER5B DNA MER1_type -60 118 1 424 129 0 0 chr11 21758131 21758193 -129025360 - MER57B LTR ERV1 -372 62 1 207 100 0 0 chr11 21758406 21758436 -129025117 + (CACCAT)n Simple_repeat Simple_repeat 4 33 0 183 100 0 0 chr11 21759537 21759567 -129023986 + (T)n Simple_repeat Simple_repeat 1 30 0 238 206 49 69 chr11 21759691 21759793 -129023760 - L1ME4a LINE L1 -67 6054 5955 584 211 65 0 chr11 21759823 21759946 -129023607 - FLAM_A SINE Alu -2 131 1 533 293 44 4 chr11 21760017 21760246 -129023307 - L1ME4a LINE L1 -245 5876 5639 260 289 41 21 chr11 21760402 21760499 -129023054 + MIR SINE MIR 66 164 -98 24 32 0 0 chr11 21760631 21760662 -129022891 + AT_rich Low_complexity Low_complexity 1 31 0 1986 118 18 4 chr11 21760691 21761020 -129022533 + AluSx SINE Alu 1 333 0 1989 125 7 4 chr11 21761304 21761611 -129021942 - AluSg SINE Alu 0 308 1 409 261 91 8 chr11 21761966 21762219 -129021334 - L1MEc LINE L1 -4839 1471 1198 282 100 0 50 chr11 21762213 21762273 -129021280 - L1PA15 LINE L1 -3 6162 6106 * 4209 101 5 9 chr11 21762270 21762927 -129020626 - L1PA13 LINE L1 -117 6046 5393 1755 186 5 0 chr11 21762924 21763301 -129020252 - L1PA13 LINE L1 -982 5164 4786 * 10575 170 23 8 chr11 21763301 21765437 -129018116 + L1PA13 LINE L1 2605 4774 -1372 473 262 88 55 chr11 21765439 21765659 -129017894 - L1MEc LINE L1 -4943 1176 965 249 57 0 0 chr11 21765659 21765694 -129017859 + (CA)n Simple_repeat Simple_repeat 1 35 0 473 262 88 55 chr11 21765694 21765999 -129017554 - L1MEc LINE L1 -5154 965 634 707 208 25 6 chr11 21766012 21766171 -129017382 + MER3 DNA MER1_type 1 162 -47 979 270 89 62 chr11 21766205 21766813 -129016740 - L1MEc LINE L1 -5492 627 4 259 252 145 38 chr11 21767503 21767634 -129015919 + L2 LINE L2 3017 3161 -152 360 194 14 14 chr11 21767665 21767737 -129015816 + MER5C DNA MER1_type 8 79 -245 2271 119 0 10 chr11 21768099 21768410 -129015143 - AluSx SINE Alu -4 308 1 626 274 117 33 chr11 21768893 21769312 -129014241 - L1ME4a LINE L1 -1 6120 5667 191 364 23 45 chr11 21770061 21770193 -129013360 + MIR SINE MIR 16 144 -64 24 32 0 0 chr11 21770241 21770272 -129013281 + AT_rich Low_complexity Low_complexity 1 31 0 2221 292 146 50 chr11 21772103 21774303 -129009250 - L2 LINE L2 0 3313 718 340 183 0 117 chr11 21774392 21774529 -129009024 - MER103 DNA DNA 0 166 46 21 36 0 0 chr11 21774534 21774562 -129008991 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr11 21774691 21774719 -129008834 + AT_rich Low_complexity Low_complexity 1 28 0 336 324 43 57 chr11 21774759 21775040 -129008513 - L1 LINE L1 -1631 4515 4239 1627 176 0 47 chr11 21775588 21775939 -129007614 - AluJb SINE Alu 0 339 3 22 88 0 0 chr11 21776251 21776308 -129007245 + AT_rich Low_complexity Low_complexity 1 57 0 889 302 36 46 chr11 21777824 21778241 -129005312 - LTR16A LTR ERVL -14 436 24 1738 115 0 0 chr11 21778606 21778840 -129004713 - AluSx SINE Alu -16 296 63 420 306 0 0 chr11 21779639 21779747 -129003806 + MIR3 SINE MIR 99 206 -2 3397 107 6 2 chr11 21779956 21780452 -129003101 + L1PB1 LINE L1 5639 6136 -15 22 0 0 0 chr11 21780483 21780505 -129003048 + AT_rich Low_complexity Low_complexity 1 22 0 1242 267 120 24 chr11 21780694 21781444 -129002109 - L2 LINE L2 -1 3312 2496 506 252 120 45 chr11 21781534 21781868 -129001685 - L2 LINE L2 -181 3132 2776 2734 49 0 0 chr11 21782050 21782377 -129001176 - L1PA7 LINE L1 -5 6149 5823 614 248 141 83 chr11 21782936 21783488 -129000065 - L1ME4a LINE L1 -5 6116 5533 237 285 51 13 chr11 21783537 21783695 -128999858 - L1ME4a LINE L1 -2331 5477 5314 402 299 164 48 chr11 21783748 21784552 -128999001 - L1ME4a LINE L1 -920 5226 4330 522 315 76 13 chr11 21784911 21785149 -128998404 - MIR SINE MIR -8 254 2 330 321 82 41 chr11 21785289 21785485 -128998068 + MIR3 SINE MIR 3 206 -2 417 314 131 0 chr11 21785694 21785847 -128997706 - MIR3 SINE MIR -3 205 33 419 299 108 40 chr11 21786020 21786623 -128996930 + L1MC4a LINE L1 5258 5901 -1907 221 229 0 21 chr11 21788016 21788064 -128995489 + L2 LINE L2 2992 3038 -234 229 248 26 115 chr11 21788155 21788268 -128995285 + L2 LINE L2 3200 3302 -11 627 240 36 57 chr11 21789106 21789298 -128994255 + MIR SINE MIR 29 216 -46 1561 144 23 107 chr11 21789612 21789959 -128993594 - AluYb8 SINE Alu 0 318 1 670 347 3 45 chr11 21790047 21790384 -128993169 - L2 LINE L2 -31 3282 2960 290 276 153 0 chr11 21790402 21790500 -128993053 + MIR SINE MIR 35 147 -115 951 190 56 36 chr11 21790979 21791307 -128992246 + MER33 DNA MER1_type 1 324 0 1398 259 83 89 chr11 21791527 21791720 -128991833 - MER21B LTR ERV1 -149 714 521 1807 167 21 0 chr11 21791720 21791919 -128991634 - AluSx SINE Alu 0 312 123 180 111 0 0 chr11 21791919 21791946 -128991607 + (TG)n Simple_repeat Simple_repeat 2 28 0 1807 167 21 0 chr11 21791946 21792072 -128991481 - AluSx SINE Alu -189 123 1 1398 259 83 89 chr11 21792072 21792573 -128990980 - MER21B LTR ERV1 -342 521 24 1257 290 83 34 chr11 21792633 21793427 -128990126 - L2 LINE L2 0 3313 2481 338 308 76 27 chr11 21793434 21793619 -128989934 - L2 LINE L2 -484 2830 2637 314 248 99 41 chr11 21795375 21795496 -128988057 + MIR SINE MIR 20 147 -115 397 197 26 132 chr11 21795501 21795592 -128987961 - L2 LINE L2 -2 3311 3212 2047 137 0 14 chr11 21795592 21795885 -128987668 + AluSx SINE Alu 1 289 -23 276 30 0 0 chr11 21795891 21795924 -128987629 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 397 197 26 132 chr11 21795924 21795977 -128987576 - L2 LINE L2 -106 3207 3176 22 0 0 0 chr11 21796067 21796089 -128987464 + AT_rich Low_complexity Low_complexity 1 22 0 2380 113 0 0 chr11 21796675 21796984 -128986569 + AluSx SINE Alu 1 309 -3 570 297 179 0 chr11 21797151 21797363 -128986190 - MIR SINE MIR 0 262 13 1123 71 0 7 chr11 21798075 21798229 -128985324 + L1PA11 LINE L1 6022 6174 0 23 33 0 0 chr11 21798562 21798592 -128984961 + AT_rich Low_complexity Low_complexity 1 30 0 299 324 9 38 chr11 21798705 21798810 -128984743 + MIR SINE MIR 20 121 -141 461 259 147 12 chr11 21799991 21800161 -128983392 + MIR SINE MIR 6 198 -64 225 217 43 14 chr11 21800261 21800330 -128983223 + MIR SINE MIR 179 249 -13 308 186 34 0 chr11 21802594 21802653 -128980900 - L2 LINE L2 -217 3055 2995 493 228 30 0 chr11 21803061 21803162 -128980391 + MER5A DNA MER1_type 9 112 -77 184 306 19 83 chr11 21803249 21803357 -128980196 + MER5A DNA MER1_type 16 116 -73 402 315 16 8 chr11 21803481 21803608 -128979945 - MER5B DNA MER1_type -1 177 50 262 278 0 42 chr11 21803654 21803726 -128979827 + MER5B DNA MER1_type 110 178 0 1062 146 195 71 chr11 21804390 21804657 -128978896 - AluJb SINE Alu -2 300 1 2512 134 23 28 chr11 21805537 21805971 -128977582 + MSTB1 LTR MaLR 1 432 0 2319 109 0 0 chr11 21806385 21806689 -128976864 + AluSx SINE Alu 1 304 -8 198 174 0 0 chr11 21807555 21807601 -128975952 + (CATA)n Simple_repeat Simple_repeat 4 49 0 24 0 0 0 chr11 21807833 21807857 -128975696 + AT_rich Low_complexity Low_complexity 1 24 0 324 256 12 0 chr11 21808988 21809070 -128974483 - MIR SINE MIR -14 248 166 928 281 48 33 chr11 21809335 21809812 -128973741 - L1MC4a LINE L1 -1872 5936 5449 255 61 0 0 chr11 21809812 21809845 -128973708 + (CA)n Simple_repeat Simple_repeat 2 34 0 928 281 48 33 chr11 21809845 21809886 -128973667 - L1MC4a LINE L1 -2359 5449 5410 832 349 213 10 chr11 21809966 21810746 -128972807 + L2 LINE L2 1785 2722 -592 291 254 12 98 chr11 21810780 21810929 -128972624 - MIR SINE MIR -66 196 3 182 396 70 21 chr11 21811431 21811618 -128971935 + L2 LINE L2 2659 2854 -460 242 254 18 0 chr11 21812315 21812370 -128971183 - MIR SINE MIR -77 131 76 309 339 27 9 chr11 21812964 21813076 -128970477 + MER91B DNA MER1_type 36 149 -41 250 294 135 16 chr11 21813267 21813393 -128970160 + MIR SINE MIR 121 261 -1 771 296 50 0 chr11 21813789 21814029 -128969524 + MIR SINE MIR 11 262 0 349 307 129 7 chr11 21814043 21814183 -128969370 - L2 LINE L2 -1 3312 3156 458 354 122 8 chr11 21814214 21814277 -128969276 - L2 LINE L2 -235 3037 2983 1503 200 33 20 chr11 21814277 21814577 -128968976 + AluJo SINE Alu 3 306 -6 458 354 122 8 chr11 21814577 21814898 -128968655 - L2 LINE L2 -289 2983 2614 2231 84 0 26 chr11 21815752 21816062 -128967491 - AluY SINE Alu -9 302 1 236 283 0 0 chr11 21816627 21816680 -128966873 + MER58A DNA MER1_type 2 54 -170 681 256 64 0 chr11 21816708 21816880 -128966673 + MER58A DNA MER1_type 42 224 0 423 0 0 0 chr11 21816982 21817029 -128966524 + (TG)n Simple_repeat Simple_repeat 2 48 0 228 296 182 0 chr11 21817310 21817398 -128966155 - MIR SINE MIR -133 129 26 244 280 65 24 chr11 21818468 21818636 -128964917 - MER89 LTR ERV1 -3 556 382 204 301 14 14 chr11 21819409 21819482 -128964071 + MIR SINE MIR 25 97 -111 373 309 176 19 chr11 21819801 21820011 -128963542 + MIR SINE MIR 20 262 0 894 275 17 8 chr11 21821194 21821430 -128962123 + MIR SINE MIR 6 243 -19 529 267 82 5 chr11 21821959 21822154 -128961399 + MER63A DNA MER1_type 1 210 0 23 0 0 0 chr11 21822260 21822283 -128961270 + AT_rich Low_complexity Low_complexity 1 23 0 2147 126 48 28 chr11 21822466 21822823 -128960730 - THE1B LTR MaLR 0 364 1 11426 97 13 2 chr11 21822823 21824385 -128959168 - THE1B-int LTR MaLR 0 1580 1 2095 110 52 52 chr11 21824385 21824532 -128959021 - THE1B LTR MaLR 0 364 218 2172 138 3 0 chr11 21824532 21824829 -128958724 - AluSq SINE Alu -13 300 3 2095 110 52 52 chr11 21824829 21825045 -128958508 - THE1B LTR MaLR -145 219 1 560 341 102 25 chr11 21825139 21825570 -128957983 + L2 LINE L2 219 682 -2632 1577 166 57 24 chr11 21825643 21825939 -128957614 - AluJb SINE Alu -6 306 1 1100 212 145 50 chr11 21826193 21826675 -128956878 - LTR10B LTR ERV1 -5 542 15 24 0 0 0 chr11 21827879 21827903 -128955650 + AT_rich Low_complexity Low_complexity 1 24 0 507 17 0 0 chr11 21828115 21828175 -128955378 + (CA)n Simple_repeat Simple_repeat 2 61 0 333 307 227 0 chr11 21828521 21828684 -128954869 - MIR SINE MIR -11 251 52 466 168 10 10 chr11 21828799 21828900 -128954653 - L1MB8 LINE L1 0 6178 6078 819 179 19 71 chr11 21828900 21828944 -128954609 - L1MB4 LINE L1 -6 6174 6129 1835 162 0 10 chr11 21828944 21829240 -128954313 - AluSx SINE Alu -19 293 1 819 179 19 71 chr11 21829240 21829400 -128954153 - L1MB4 LINE L1 -51 6129 5979 968 163 22 11 chr11 21829431 21829609 -128953944 + L1M3 LINE L1 5554 5733 -447 222 37 0 0 chr11 21829745 21829772 -128953781 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 7254 35 0 0 chr11 21829774 21830771 -128952782 - L1PA4 LINE L1 -13 6142 5141 1710 142 58 18 chr11 21830774 21831071 -128952482 - AluSq SINE Alu 0 308 1 714 212 52 65 chr11 21831077 21831308 -128952245 - MER106A DNA MER1_type 0 236 9 803 245 51 31 chr11 21831308 21831565 -128951988 + MIR SINE MIR 1 262 0 478 319 13 19 chr11 21832369 21832526 -128951027 + MIR SINE MIR 107 262 0 1421 200 108 3 chr11 21833671 21834006 -128949547 - MLT1A2 LTR MaLR -4 370 1 2811 181 11 65 chr11 21834037 21834684 -128948869 - LTR9 LTR ERV1 0 612 1 672 107 0 0 chr11 21834687 21834790 -128948763 + (TCCCC)n Simple_repeat Simple_repeat 2 104 0 297 218 10 20 chr11 21834898 21834999 -128948554 + CT-rich Low_complexity Low_complexity 4 103 0 888 269 25 21 chr11 21835228 21835466 -128948087 + MIR SINE MIR 23 261 -1 183 156 0 0 chr11 21835635 21835667 -128947886 + GA-rich Low_complexity Low_complexity 1 32 0 359 272 59 59 chr11 21835849 21835985 -128947568 + MIR3 SINE MIR 15 150 -58 1429 153 84 4 chr11 21836037 21836311 -128947242 - L1MC1 LINE L1 -18 6315 6020 432 292 36 22 chr11 21836816 21836953 -128946600 - MIR3 SINE MIR -49 159 21 359 296 127 73 chr11 21838023 21838243 -128945310 + MIR SINE MIR 7 238 -24 311 300 0 22 chr11 21839822 21839912 -128943641 + L2 LINE L2 2654 2741 -573 288 390 58 6 chr11 21840028 21840200 -128943353 + L2 LINE L2 2901 3081 -191 546 289 58 67 chr11 21840519 21840865 -128942688 - MLT1I LTR MaLR -57 352 10 396 323 82 9 chr11 21840875 21841095 -128942458 + L2 LINE L2 708 943 -2371 225 186 102 0 chr11 21841099 21841158 -128942395 - LTR16A LTR ERVL 0 450 386 490 343 12 0 chr11 21841529 21841701 -128941852 + MIR SINE MIR 48 221 -41 249 250 125 23 chr11 21841729 21841817 -128941736 - MIR SINE MIR -74 134 38 396 0 0 0 chr11 21844359 21844403 -128939150 + (CA)n Simple_repeat Simple_repeat 2 45 0 2040 333 95 29 chr11 21844943 21846467 -128937086 + L2 LINE L2 1685 3308 -5 914 330 23 6 chr11 21846662 21847013 -128936540 - MLT1I LTR MaLR -47 362 6 214 162 0 0 chr11 21847946 21847983 -128935570 + (ATTG)n Simple_repeat Simple_repeat 2 38 0 395 179 98 71 chr11 21850064 21850176 -128933377 - MER5B DNA MER1_type -63 115 1 233 56 0 28 chr11 21851489 21851525 -128932028 + (TCTA)n Simple_repeat Simple_repeat 4 38 0 221 306 190 0 chr11 21851670 21851791 -128931762 + MIR SINE MIR 48 191 -71 601 300 93 49 chr11 21851802 21852349 -128931204 - MLT1L LTR MaLR 0 615 45 345 82 0 0 chr11 21852349 21852398 -128931155 + (TG)n Simple_repeat Simple_repeat 2 50 0 644 256 97 38 chr11 21852601 21852950 -128930603 + L1ME4a LINE L1 5501 5869 -252 24 0 0 0 chr11 21853309 21853333 -128930220 + AT_rich Low_complexity Low_complexity 1 24 0 1506 180 104 9 chr11 21853479 21853631 -128929922 - MLT1A1 LTR MaLR 0 365 229 2369 88 7 0 chr11 21853631 21853928 -128929625 - AluSp SINE Alu -14 299 1 1506 180 104 9 chr11 21853928 21854102 -128929451 - MLT1A1 LTR MaLR -136 229 8 387 295 9 0 chr11 21854967 21855072 -128928481 + MIR SINE MIR 157 262 0 208 339 58 41 chr11 21855066 21855187 -128928366 - MIR SINE MIR -109 153 31 * 494 110 0 66 chr11 21855296 21855409 -128928144 + L1PB1 LINE L1 6060 6166 0 284 289 3 16 chr11 21855456 21855566 -128927987 + MIR SINE MIR 19 127 -81 1125 175 8 85 chr11 21856351 21856597 -128926956 + AluJo SINE Alu 11 237 -75 480 174 0 0 chr11 21856600 21856692 -128926861 + GA-rich Low_complexity Low_complexity 2 93 0 3609 153 14 39 chr11 21858260 21858979 -128924574 + L1MB3 LINE L1 5480 6180 -3 27 0 0 0 chr11 21859121 21859148 -128924405 + AT_rich Low_complexity Low_complexity 1 27 0 26 64 0 0 chr11 21860225 21860272 -128923281 + AT_rich Low_complexity Low_complexity 1 47 0 393 275 74 58 chr11 21860399 21860588 -128922965 + MIR3 SINE MIR 17 208 0 261 146 0 0 chr11 21861210 21861258 -128922295 + (TG)n Simple_repeat Simple_repeat 1 48 0 7212 180 78 77 chr11 21861302 21863054 -128920499 - MER52A LTR ERV1 0 1755 1 352 291 133 30 chr11 21863063 21863228 -128920325 + MIR3 SINE MIR 21 202 -6 229 353 29 10 chr11 21863219 21863321 -128920232 - L2 LINE L2 -153 3119 3016 * 226 319 117 32 chr11 21863583 21863677 -128919876 - L2 LINE L2 -2 3311 3210 459 294 71 6 chr11 21863879 21864049 -128919504 + MIR SINE MIR 74 254 -8 489 308 58 39 chr11 21864512 21864720 -128918833 + MIR SINE MIR 22 233 -29 184 200 50 0 chr11 21864757 21864797 -128918756 + L2 LINE L2 3256 3297 -16 746 313 80 16 chr11 21864975 21865457 -128918096 - L2 LINE L2 -93 3220 2716 201 39 0 0 chr11 21865767 21865793 -128917760 + (CAT)n Simple_repeat Simple_repeat 2 27 0 248 275 83 42 chr11 21867163 21867283 -128916270 + MIR SINE MIR 73 197 -65 30 45 0 0 chr11 21867702 21867746 -128915807 + AT_rich Low_complexity Low_complexity 1 44 0 1058 263 48 35 chr11 21868328 21868704 -128914849 + L2 LINE L2 2921 3301 -12 421 303 36 12 chr11 21868772 21868937 -128914616 - MLT1L LTR MaLR -10 605 437 316 261 104 9 chr11 21869815 21869930 -128913623 - MIR3 SINE MIR -46 162 37 242 167 0 0 chr11 21870459 21870501 -128913052 + MIR SINE MIR 81 122 -140 2091 124 0 0 chr11 21870764 21871090 -128912463 - AluSq SINE Alu 0 326 1 180 186 23 23 chr11 21871783 21871826 -128911727 + MIR SINE MIR 111 153 -109 858 224 60 43 chr11 21873924 21874156 -128909397 + MIR SINE MIR 27 262 0 596 294 104 14 chr11 21874164 21874375 -128909178 - MIR SINE MIR -16 246 17 219 349 12 0 chr11 21874930 21875013 -128908540 + L2 LINE L2 3186 3269 -3 406 317 28 7 chr11 21875066 21875208 -128908345 + MIR SINE MIR 97 241 -21 273 340 64 21 chr11 21875302 21875490 -128908063 - LTR33 LTR ERVL -66 455 260 2066 128 0 3 chr11 21875784 21876074 -128907479 + AluSx SINE Alu 1 289 -23 512 237 20 7 chr11 21876223 21876375 -128907178 + MER103 DNA DNA 1 154 -12 2511 73 3 13 chr11 21876574 21876889 -128906664 + AluSp SINE Alu 1 312 -1 2190 128 22 27 chr11 21878309 21878675 -128904878 - THE1B LTR MaLR 0 364 1 709 277 30 131 chr11 21878694 21879123 -128904430 - L2 LINE L2 -5 3308 2923 363 217 6 121 chr11 21879656 21879787 -128903766 - MER5B DNA MER1_type -5 173 61 2003 163 119 13 chr11 21879787 21880174 -128903379 - MSTA LTR MaLR 0 428 1 363 217 6 121 chr11 21880174 21880199 -128903354 - MER5B DNA MER1_type -117 61 35 226 200 29 29 chr11 21880418 21880488 -128903065 + (TG)n Simple_repeat Simple_repeat 2 71 0 703 222 15 45 chr11 21880541 21880739 -128902814 + MIR SINE MIR 66 257 -5 249 186 0 0 chr11 21882329 21882372 -128901181 + (TG)n Simple_repeat Simple_repeat 1 43 0 560 239 8 31 chr11 21882449 21882579 -128900974 - L2 LINE L2 0 3272 3146 256 59 29 0 chr11 21882680 21882714 -128900839 + U2 snRNA snRNA 1 35 -153 380 252 138 38 chr11 21882723 21882882 -128900671 - MIR SINE MIR -81 181 7 383 329 36 14 chr11 21883453 21883593 -128899960 - L2 LINE L2 -1 3271 3129 192 348 155 37 chr11 21884002 21885769 -128897784 - L2 LINE L2 -656 2658 684 1923 135 0 34 chr11 21885834 21886131 -128897422 + AluSx SINE Alu 1 287 -25 253 281 0 0 chr11 21886131 21886220 -128897333 + L1MC4 LINE L1 6615 6703 -1339 647 267 70 0 chr11 21886699 21886871 -128896682 + MIR SINE MIR 2 185 -77 1998 178 42 31 chr11 21886892 21887421 -128896132 + MLT2A2 LTR ERVL 1 542 -12 180 240 80 0 chr11 21887940 21887990 -128895563 - MIR SINE MIR -140 122 69 23 33 0 0 chr11 21889678 21889708 -128893845 + AT_rich Low_complexity Low_complexity 1 30 0 405 0 0 0 chr11 21890023 21890068 -128893485 + (CA)n Simple_repeat Simple_repeat 2 46 0 2026 151 3 0 chr11 21890280 21890579 -128892974 + AluSx SINE Alu 1 300 -12 978 190 87 7 chr11 21890629 21890929 -128892624 - MER33 DNA MER1_type 0 324 1 2255 112 0 3 chr11 21890969 21891274 -128892279 - AluSc SINE Alu -5 304 1 421 217 104 0 chr11 21892495 21892601 -128890952 + MLT1B LTR MaLR 6 122 -268 1459 206 84 22 chr11 21892601 21892932 -128890621 - MLT1A2 LTR MaLR 0 593 24 1061 195 58 27 chr11 21892959 21893220 -128890333 + MLT1B LTR MaLR 122 390 0 524 325 30 0 chr11 21894320 21894523 -128889030 + L2 LINE L2 2177 2385 -929 3433 122 0 36 chr11 21894529 21894784 -128888769 + L1MA3 LINE L1 5576 5839 -466 2086 128 27 0 chr11 21894784 21895080 -128888473 - AluSx SINE Alu -8 304 1 3433 122 0 36 chr11 21895080 21895408 -128888145 + L1MA3 LINE L1 5839 6138 -167 1025 119 23 6 chr11 21895461 21895637 -128887916 + L1MA3 LINE L1 6127 6305 0 185 405 0 0 chr11 21895672 21895751 -128887802 + L2 LINE L2 2376 2454 -860 347 320 52 75 chr11 21896007 21896447 -128887106 - MLT1K LTR MaLR 0 588 159 913 329 19 62 chr11 21896695 21897178 -128886375 + L2 LINE L2 2852 3313 0 1000 303 126 52 chr11 21897227 21897821 -128885732 - L3 LINE CR1 -87 1490 853 231 60 30 60 chr11 21899679 21899746 -128883807 + (TA)n Simple_repeat Simple_repeat 1 65 0 203 391 9 19 chr11 21899763 21899978 -128883575 - L3 LINE CR1 -714 863 651 395 253 121 15 chr11 21900343 21900541 -128883012 - L1ME4a LINE L1 -63 6058 5840 21 0 0 0 chr11 21901647 21901668 -128881885 + AT_rich Low_complexity Low_complexity 1 21 0 209 339 0 0 chr11 21901711 21901767 -128881786 - MIR SINE MIR -12 250 195 282 73 0 0 chr11 21901935 21901976 -128881577 + (TG)n Simple_repeat Simple_repeat 1 41 0 267 130 0 0 chr11 21902772 21902826 -128880727 + (TG)n Simple_repeat Simple_repeat 2 55 0 733 309 14 18 chr11 21902935 21903152 -128880401 - MIR SINE MIR 0 262 47 388 239 94 17 chr11 21903174 21903291 -128880262 + MER94 DNA DNA 1 126 -8 363 258 56 0 chr11 21905128 21905217 -128878336 + MIR SINE MIR 157 250 -12 240 164 0 115 chr11 21905844 21905905 -128877648 + MLT1A2 LTR MaLR 313 366 -8 5477 160 11 27 chr11 21905987 21907140 -128876413 - L1MA7 LINE L1 0 6291 5157 1618 199 11 0 chr11 21907521 21907803 -128875750 + AluJb SINE Alu 12 296 -16 355 188 58 109 chr11 21908362 21908478 -128875075 - MLT1H LTR MaLR 0 549 453 774 241 16 21 chr11 21908906 21909097 -128874456 - MER58A DNA MER1_type -15 209 20 413 95 0 168 chr11 21910269 21910364 -128873189 + MADE1 DNA Mariner 1 79 -1 202 314 59 39 chr11 21910474 21910576 -128872977 - MIR SINE MIR -148 114 11 888 234 14 29 chr11 21910953 21911162 -128872391 - MIR SINE MIR -39 223 18 2337 105 0 3 chr11 21911175 21911488 -128872065 + AluSx SINE Alu 1 312 0 715 253 166 25 chr11 21911509 21912004 -128871549 - LTR50 LTR ERVL -3 792 181 7277 45 2 0 chr11 21912106 21913713 -128869840 + L1PA4 LINE L1 4541 6151 -4 4402 209 59 14 chr11 21913716 21915913 -128867640 + L1MC1 LINE L1 3912 6193 -140 4781 188 67 65 chr11 21915913 21917469 -128866084 + L1M1 LINE L1 13 1875 -5690 1921 142 16 14 chr11 21917468 21917979 -128865574 + L1MA2 LINE L1 4957 5470 -746 * 315 196 0 0 chr11 21917979 21918030 -128865523 - AluSp SINE Alu -148 155 105 710 161 8 0 chr11 21918030 21918148 -128865405 + AluSg/x SINE Alu 179 297 -15 4994 133 20 2 chr11 21918148 21918977 -128864576 + L1MA2 LINE L1 5461 6304 0 30 0 0 0 chr11 21918977 21919007 -128864546 + AT_rich Low_complexity Low_complexity 1 30 0 608 219 15 0 chr11 21919012 21919149 -128864404 + L1MC1 LINE L1 6186 6324 -9 183 42 0 0 chr11 21921442 21921466 -128862087 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 423 0 0 0 chr11 21922039 21922086 -128861467 + (CA)n Simple_repeat Simple_repeat 2 48 0 738 256 64 0 chr11 21922188 21922360 -128861193 - MER58A DNA MER1_type 0 224 42 256 283 0 0 chr11 21922388 21922441 -128861112 - MER58A DNA MER1_type -170 54 2 2221 91 0 25 chr11 21923007 21923326 -128860227 + AluY SINE Alu 1 311 0 833 250 161 23 chr11 21923347 21923954 -128859599 - LTR50 LTR ERVL -3 792 56 278 307 134 31 chr11 21924065 21924192 -128859361 + L2 LINE L2 3122 3261 -11 449 268 51 31 chr11 21924905 21925075 -128858478 + MIR3 SINE MIR 23 196 -12 2038 127 0 3 chr11 21925124 21925431 -128858122 - AluSx SINE Alu 0 306 1 22 0 0 0 chr11 21925735 21925757 -128857796 + AT_rich Low_complexity Low_complexity 1 22 0 276 175 0 0 chr11 21925934 21925997 -128857556 + (TCCA)n Simple_repeat Simple_repeat 2 64 0 2360 93 3 0 chr11 21926155 21926456 -128857097 - AluSq SINE Alu -11 302 1 456 274 62 0 chr11 21926476 21926622 -128856931 + MIR SINE MIR 88 242 -20 218 311 74 30 chr11 21927345 21927480 -128856073 - L3 LINE CR1 -392 1185 1045 328 328 63 50 chr11 21927735 21927952 -128855601 + MIR SINE MIR 13 231 -31 240 301 175 0 chr11 21928582 21928685 -128854868 - MIR3 SINE MIR -3 205 85 309 304 111 23 chr11 21928748 21928919 -128854634 + MIR SINE MIR 71 256 -6 29 0 0 0 chr11 21929456 21929485 -128854068 + AT_rich Low_complexity Low_complexity 1 29 0 395 275 76 0 chr11 21929909 21930080 -128853473 - L1ME3 LINE L1 -227 5935 5752 23 0 0 0 chr11 21930408 21930431 -128853122 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr11 21930543 21930566 -128852987 + AT_rich Low_complexity Low_complexity 1 23 0 2126 121 3 0 chr11 21930932 21931229 -128852324 + AluSx SINE Alu 1 298 -14 474 259 32 79 chr11 21931845 21931941 -128851612 + MIR SINE MIR 2 86 -176 1517 222 50 56 chr11 21931941 21932445 -128851108 + MLT1D LTR MaLR 1 501 -4 474 259 32 79 chr11 21932445 21932537 -128851016 + MIR SINE MIR 86 181 -81 27 29 0 0 chr11 21934325 21934359 -128849194 + AT_rich Low_complexity Low_complexity 1 34 0 583 214 69 38 chr11 21935250 21935409 -128848144 - MER5B DNA MER1_type 0 178 15 1029 203 0 11 chr11 21935436 21935623 -128847930 + MER5A DNA MER1_type 5 189 0 1343 177 38 38 chr11 21936367 21936684 -128846869 - MER33 DNA MER1_type -7 317 1 208 178 0 67 chr11 21937072 21937117 -128846436 - L2 LINE L2 -18 3254 3213 735 314 78 61 chr11 21937138 21937692 -128845861 + L2 LINE L2 2736 3299 -14 1972 120 36 23 chr11 21937732 21938040 -128845513 - AluSq SINE Alu -1 312 1 291 325 13 0 chr11 21938130 21938207 -128845346 - MIR SINE MIR -177 85 8 1529 254 84 25 chr11 21938744 21939334 -128844219 - MLT1G LTR MaLR 0 590 1 345 330 49 71 chr11 21939625 21939892 -128843661 + L2 LINE L2 2962 3222 -50 228 245 0 0 chr11 21939997 21940050 -128843503 + CT-rich Low_complexity Low_complexity 1 53 0 31059 100 15 25 chr11 21940507 21946575 -128836978 - L1PA7 LINE L1 0 6469 364 1347 259 77 5 chr11 21946913 21947342 -128836211 - MLT1C LTR MaLR 0 467 8 449 329 34 19 chr11 21948028 21948235 -128835318 - MIR SINE MIR -6 256 47 187 349 0 15 chr11 21948655 21948721 -128834832 - MIR3 SINE MIR -133 75 11 921 193 17 73 chr11 21948759 21949059 -128834494 - L1MA9 LINE L1 -30 6282 6000 26 64 0 0 chr11 21949279 21949326 -128834227 + AT_rich Low_complexity Low_complexity 1 47 0 215 61 30 0 chr11 21950175 21950208 -128833345 + (TA)n Simple_repeat Simple_repeat 1 34 0 456 264 8 0 chr11 21950444 21950569 -128832984 - L1MB7 LINE L1 -9 6175 6050 3489 194 30 12 chr11 21950696 21951536 -128832017 - L1MB7 LINE L1 -126 6058 5204 219 189 0 0 chr11 21951786 21951839 -128831714 + CT-rich Low_complexity Low_complexity 3 55 0 712 337 91 38 chr11 21952044 21952642 -128830911 - L2 LINE L2 -188 3084 2458 2158 123 0 7 chr11 21952671 21952972 -128830581 - AluSx SINE Alu -1 311 13 292 274 210 16 chr11 21953060 21953184 -128830369 + MIR SINE MIR 111 258 -4 2980 223 36 76 chr11 21953604 21954947 -128828606 + L1MD2 LINE L1 4024 5261 -1098 1213 194 13 0 chr11 21954947 21955179 -128828374 - MER46A DNA MER2_type 0 236 2 2980 223 36 76 chr11 21955179 21955594 -128827959 + L1MD2 LINE L1 5261 5691 -668 568 214 180 89 chr11 21955591 21955885 -128827668 + L1MD2 LINE L1 5928 6194 -165 * 2580 116 3 11 chr11 21955885 21956263 -128827290 + THE1C LTR MaLR 1 375 0 9919 135 35 4 chr11 21956263 21957796 -128825757 + THE1C-int LTR MaLR 1 1580 0 2307 152 11 11 chr11 21957796 21958171 -128825382 + THE1C LTR MaLR 1 375 0 568 214 180 89 chr11 21958171 21958201 -128825352 + L1MD2 LINE L1 6193 6284 -75 367 176 44 11 chr11 21958247 21958338 -128825215 + L1MD2 LINE L1 6253 6346 -13 13725 193 15 29 chr11 21959215 21960648 -128822905 - L1MA5 LINE L1 -10 7352 5901 1907 157 141 5 chr11 21960648 21961023 -128822530 - MSTA LTR MaLR -2 426 1 13725 193 15 29 chr11 21961023 21962553 -128821000 - L1MA5 LINE L1 -1461 5901 4351 1766 181 0 3 chr11 21962553 21962852 -128820701 - AluJb SINE Alu -14 298 1 13725 193 15 29 chr11 21962852 21963029 -128820524 - L1MA5 LINE L1 -3011 4351 4173 2270 77 6 52 chr11 21963029 21963354 -128820199 - AluY SINE Alu -1 310 1 13725 193 15 29 chr11 21963354 21965093 -128818460 - L1MA5 LINE L1 -3189 4173 2552 1228 213 80 7 chr11 21965093 21965380 -128818173 - AluJb SINE Alu -4 308 1 13725 193 15 29 chr11 21965380 21965825 -128817728 - L1MA5 LINE L1 -4810 2552 2102 2065 275 59 29 chr11 21965836 21966501 -128817052 - L1MA5 LINE L1 -6524 685 1 228 143 0 0 chr11 21966590 21966632 -128816921 + (TAG)n Simple_repeat Simple_repeat 1 42 0 935 272 20 8 chr11 21966644 21966894 -128816659 - MIR SINE MIR -3 259 7 455 314 63 11 chr11 21967270 21967445 -128816108 + MIR SINE MIR 45 228 -34 522 244 16 0 chr11 21968106 21968233 -128815320 - MER94 DNA DNA 0 134 6 22 35 0 0 chr11 21968346 21968375 -128815178 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr11 21968788 21968809 -128814744 + AT_rich Low_complexity Low_complexity 1 21 0 690 98 25 0 chr11 21969535 21969657 -128813896 + (TCCCC)n Simple_repeat Simple_repeat 5 129 0 742 269 10 34 chr11 21969699 21969907 -128813646 - MER20 DNA MER1_type -15 204 2 335 210 74 37 chr11 21969967 21970048 -128813505 + MIR SINE MIR 71 154 -108 539 280 129 41 chr11 21970783 21971225 -128812328 + L2 LINE L2 2748 3270 -43 320 325 61 0 chr11 21971226 21971340 -128812213 + L2 LINE L2 3183 3303 -10 514 180 34 0 chr11 21971414 21971503 -128812050 - MIR SINE MIR -90 172 81 511 305 44 58 chr11 21971591 21971947 -128811606 + L1ME LINE L1 5455 5806 -364 233 218 0 18 chr11 21971973 21972028 -128811525 + (CA)n Simple_repeat Simple_repeat 2 55 0 1450 139 27 106 chr11 21973025 21973356 -128810197 + AluYb8 SINE Alu 1 305 -13 1818 167 7 0 chr11 21973652 21973958 -128809595 - AluSx SINE Alu -3 309 2 261 320 39 29 chr11 21974221 21974324 -128809229 - MIR SINE MIR -30 232 129 188 196 0 20 chr11 21974383 21974434 -128809119 + CT-rich Low_complexity Low_complexity 5 54 0 339 123 18 35 chr11 21975119 21975176 -128808377 - MLT1K LTR MaLR 0 588 533 * 1200 268 64 12 chr11 21975170 21975513 -128808040 - MER45C DNA AcHobo -5 948 588 192 77 0 0 chr11 21975912 21975938 -128807615 + (GGGAGA)n Simple_repeat Simple_repeat 5 30 0 190 345 30 60 chr11 21976892 21977060 -128806493 + L2 LINE L2 2755 2917 -397 339 278 11 0 chr11 21978590 21978680 -128804873 - L2 LINE L2 -6 3307 3217 * 1337 314 85 23 chr11 21978675 21979335 -128804218 + L2 LINE L2 1918 2618 -696 184 313 10 50 chr11 21979348 21979447 -128804106 - L2 LINE L2 -1839 1475 1381 419 346 13 6 chr11 21979780 21979939 -128803614 + MIR SINE MIR 7 166 -96 464 344 26 0 chr11 21979951 21980102 -128803451 + MIR SINE MIR 107 261 -1 23 0 0 0 chr11 21982902 21982925 -128800628 + AT_rich Low_complexity Low_complexity 1 23 0 820 248 187 37 chr11 21983152 21983531 -128800022 - MLT1J2 LTR MaLR -14 436 1 212 221 78 65 chr11 21984395 21984472 -128799081 - MIR3 SINE MIR -11 197 120 343 247 11 0 chr11 21984649 21984738 -128798815 - MER33 DNA MER1_type 0 363 274 474 119 0 0 chr11 21984742 21984809 -128798744 - MER33 DNA MER1_type -244 80 14 21 0 0 0 chr11 21984834 21984855 -128798698 + AT_rich Low_complexity Low_complexity 1 21 0 242 287 103 11 chr11 21985596 21985683 -128797870 + MIR SINE MIR 48 142 -66 742 188 109 20 chr11 21985794 21985996 -128797557 + MIR SINE MIR 13 232 -30 187 317 55 55 chr11 21986029 21986174 -128797379 + L2 LINE L2 2720 2864 -450 388 263 29 26 chr11 21986243 21986435 -128797118 + MIR SINE MIR 6 243 -19 222 384 154 15 chr11 21986458 21986724 -128796829 + L2 LINE L2 2960 3262 -10 217 214 171 0 chr11 21986736 21986806 -128796747 + MIR SINE MIR 166 247 -15 559 237 40 20 chr11 21987111 21987263 -128796290 - MIR SINE MIR 0 262 108 1474 167 4 0 chr11 21987457 21987696 -128795857 - Tigger3(Golem) DNA MER2_type -2 3027 2788 405 61 0 0 chr11 21987696 21987745 -128795808 - THE1A LTR MaLR 0 355 307 5874 143 55 12 chr11 21987847 21988013 -128795540 - Tigger3b DNA MER2_type -1869 1159 1002 2262 108 70 3 chr11 21988013 21988354 -128795199 - THE1B LTR MaLR 0 364 1 5874 143 55 12 chr11 21988354 21989268 -128794285 - Tigger3b DNA MER2_type -2026 1002 33 1375 196 7 7 chr11 21989381 21989661 -128793892 + AluJb SINE Alu 1 280 -32 231 36 0 0 chr11 21989664 21989692 -128793861 + (GAAAA)n Simple_repeat Simple_repeat 2 29 0 508 270 191 63 chr11 21989954 21990383 -128793170 + MLT1K LTR MaLR 4 487 -101 530 313 123 9 chr11 21993322 21993549 -128790004 - MIR SINE MIR -5 257 5 222 294 230 8 chr11 21994424 21994550 -128789003 - MIR3 SINE MIR -18 190 37 475 330 30 30 chr11 21994692 21994892 -128788661 - MIR SINE MIR -43 219 20 228 298 141 41 chr11 21994912 21995033 -128788520 + MER94 DNA DNA 2 134 0 214 281 33 99 chr11 21995078 21995199 -128788354 - L2 LINE L2 -54 3259 3147 259 390 119 0 chr11 21997342 21997460 -128786093 + L2 LINE L2 3123 3254 -18 624 265 63 36 chr11 21998085 21998308 -128785245 - LTR16C LTR ERVL -12 479 251 300 297 20 0 chr11 21998379 21998480 -128785073 - LTR16C LTR ERVL -381 110 8 221 333 43 0 chr11 21999608 21999677 -128783876 + MIR SINE MIR 23 94 -168 1231 180 101 110 chr11 21999681 22000098 -128783455 - MLT2D LTR ERVL -1 413 1 318 358 98 45 chr11 22000450 22000849 -128782704 - L2 LINE L2 -15 3257 2838 307 258 157 0 chr11 22001320 22001409 -128782144 - L2 LINE L2 0 3313 3211 1400 101 14 0 chr11 22002508 22002716 -128780837 - L1PA13 LINE L1 0 6163 5953 757 208 139 5 chr11 22002812 22003014 -128780539 - MIR SINE MIR -32 230 2 2716 275 173 65 chr11 22003072 22005314 -128778239 - HAL1 LINE L1 -20 2487 4 279 71 0 0 chr11 22005389 22005431 -128778122 + (TG)n Simple_repeat Simple_repeat 2 43 0 271 318 194 0 chr11 22005512 22005641 -128777912 + MIR SINE MIR 2 155 -107 192 77 0 0 chr11 22006068 22006094 -128777459 + (TG)n Simple_repeat Simple_repeat 2 27 0 204 277 77 39 chr11 22007809 22007964 -128775589 + L2 LINE L2 1931 2091 -1223 25 0 0 0 chr11 22008135 22008160 -128775393 + AT_rich Low_complexity Low_complexity 1 25 0 321 333 28 21 chr11 22008997 22009141 -128774412 + L2 LINE L2 2176 2320 -994 1047 184 9 5 chr11 22009146 22009358 -128774195 - L1 LINE L1 -3773 2373 2161 * 8624 199 87 29 chr11 22009356 22010664 -128772889 + L1MCa LINE L1 132 1363 -5063 231 36 0 0 chr11 22010664 22010692 -128772861 + (TC)n Simple_repeat Simple_repeat 1 28 0 8624 199 87 29 chr11 22010692 22013235 -128770318 + L1MCa LINE L1 1363 4208 -2218 40655 50 2 0 chr11 22013239 22018293 -128765260 + L1P LINE L1 7 5069 -1077 811 61 0 10 chr11 22018393 22018492 -128765061 + AluY SINE Alu 30 127 -184 192 260 20 0 chr11 22018576 22018626 -128764927 + L2 LINE L2 3185 3235 -78 24 0 0 0 chr11 22018950 22018974 -128764579 + AT_rich Low_complexity Low_complexity 1 24 0 222 299 103 0 chr11 22019191 22019288 -128764265 - MIR SINE MIR -35 227 121 3244 101 11 0 chr11 22021647 22022111 -128761442 + L1PA7 LINE L1 5682 6150 -4 549 350 60 0 chr11 22022574 22022791 -128760762 - MIR SINE MIR -15 247 18 267 344 21 10 chr11 22022932 22023028 -128760525 - MIR SINE MIR -76 132 36 531 255 155 35 chr11 22023105 22023305 -128760248 - MIR SINE MIR -21 241 18 409 200 0 77 chr11 22024414 22024544 -128759009 + L1MA9 LINE L1 6193 6312 0 35 0 0 0 chr11 22024827 22024862 -128758691 + AT_rich Low_complexity Low_complexity 1 35 0 228 225 0 0 chr11 22025034 22025074 -128758479 - 5S rRNA rRNA -81 40 1 22 0 0 0 chr11 22025152 22025174 -128758379 + AT_rich Low_complexity Low_complexity 1 22 0 223 229 14 43 chr11 22025693 22025763 -128757790 + GA-rich Low_complexity Low_complexity 5 72 0 423 0 0 0 chr11 22027314 22027361 -128756192 + (TG)n Simple_repeat Simple_repeat 2 48 0 994 262 35 0 chr11 22027449 22027731 -128755822 - MER58B DNA MER1_type -21 320 29 448 322 79 40 chr11 22027760 22027879 -128755674 - L2 LINE L2 -71 3242 3129 189 0 0 0 chr11 22027879 22027900 -128755653 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 448 322 79 40 chr11 22027900 22028370 -128755183 - L2 LINE L2 -184 3129 2620 6903 62 0 0 chr11 22028552 22029577 -128753976 - L1PA5 LINE L1 -2 6152 5119 465 298 58 12 chr11 22029665 22029836 -128753717 - MIR SINE MIR -63 199 21 595 261 73 33 chr11 22029859 22030129 -128753424 - MLT1H1 LTR MaLR 0 555 249 1202 256 0 18 chr11 22030570 22030851 -128752702 + AluJo SINE Alu 1 276 -36 302 269 13 0 chr11 22030869 22030947 -128752606 - L1MC4 LINE L1 -1350 6692 6614 2242 137 7 81 chr11 22031133 22031579 -128751974 + L1M1 LINE L1 5342 5754 -549 901 197 65 90 chr11 22031601 22031911 -128751642 - MLT1A1 LTR MaLR -59 306 5 284 347 132 5 chr11 22032028 22032247 -128751306 - MIR SINE MIR -12 250 4 231 269 29 67 chr11 22032273 22032377 -128751176 + MIR SINE MIR 17 116 -92 203 313 122 8 chr11 22032454 22032585 -128750968 + L2 LINE L2 3047 3192 -121 235 192 25 50 chr11 22033432 22033552 -128750001 + (TA)n Simple_repeat Simple_repeat 2 118 0 350 293 35 57 chr11 22033572 22033801 -128749752 - L1ME LINE L1 -297 5824 5601 190 260 40 0 chr11 22034197 22034247 -128749306 + L2 LINE L2 3216 3267 -5 252 311 131 0 chr11 22034282 22034404 -128749149 + MIR SINE MIR 125 262 0 413 259 82 63 chr11 22034657 22034912 -128748641 + L2 LINE L2 2612 2871 -443 241 366 12 0 chr11 22035011 22035093 -128748460 + L2 LINE L2 2969 3051 -221 767 130 5 38 chr11 22035350 22035535 -128748018 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 521 252 56 14 chr11 22035911 22036054 -128747499 + MIR SINE MIR 44 192 -70 282 226 118 10 chr11 22036056 22036158 -128747395 - MLT1G1 LTR MaLR 0 555 443 643 300 86 46 chr11 22036198 22036571 -128746982 - MLT1G1 LTR MaLR -206 389 2 11630 94 17 4 chr11 22036596 22037466 -128746087 + L1P3 LINE L1 8 913 -5548 2418 56 0 0 chr11 22037466 22037820 -128745733 + AluY SINE Alu 1 354 0 11630 94 17 4 chr11 22037820 22038629 -128744924 + L1P3 LINE L1 913 1710 -4751 885 123 27 0 chr11 22038638 22038784 -128744769 + L1P3 LINE L1 3210 3359 -3102 10419 104 9 10 chr11 22038784 22040449 -128743104 + L1P3 LINE L1 3795 5458 -1003 225 65 0 0 chr11 22041580 22041611 -128741942 + (TG)n Simple_repeat Simple_repeat 2 32 0 678 254 38 22 chr11 22042285 22042470 -128741083 + MIR SINE MIR 20 207 -55 273 333 92 29 chr11 22043254 22043428 -128740125 - MIR SINE MIR -3 259 75 554 41 14 0 chr11 22043509 22043582 -128739971 + (TA)n Simple_repeat Simple_repeat 2 75 0 2131 138 34 20 chr11 22043842 22044198 -128739355 - THE1B LTR MaLR 0 364 4 283 342 53 32 chr11 22044313 22044503 -128739050 - MIR SINE MIR -49 213 20 355 381 74 33 chr11 22044624 22044868 -128738685 - L2 LINE L2 -5 3267 3014 209 276 90 30 chr11 22045058 22045192 -128738361 - L2 LINE L2 -460 2854 2713 762 216 117 30 chr11 22045965 22046075 -128737478 - MIR SINE MIR 0 262 163 1638 196 45 25 chr11 22046075 22046433 -128737120 + MLT1A1 LTR MaLR 1 365 0 762 216 117 30 chr11 22046433 22046553 -128737000 - MIR SINE MIR -99 163 12 315 342 76 0 chr11 22046734 22046892 -128736661 - MIR SINE MIR 0 262 93 272 264 73 27 chr11 22047083 22047193 -128736360 - L3b LINE CR1 -212 1371 1257 653 163 0 0 chr11 22047205 22047303 -128736250 + AluSg/x SINE Alu 153 250 -60 260 0 57 0 chr11 22047310 22047345 -128736208 + (TAAAA)n Simple_repeat Simple_repeat 2 38 0 194 152 0 65 chr11 22047686 22047732 -128735821 - L2 LINE L2 -7 3265 3223 1273 174 69 7 chr11 22047780 22048056 -128735497 - MSTC LTR MaLR 0 428 136 2100 146 34 48 chr11 22048056 22048474 -128735079 + MSTA LTR MaLR 17 428 0 625 129 20 0 chr11 22048489 22048590 -128734963 - MSTC LTR MaLR -324 104 2 572 337 0 5 chr11 22048592 22048782 -128734771 + MIR SINE MIR 74 262 0 272 304 0 14 chr11 22048800 22048869 -128734684 - L2 LINE L2 -44 3228 3161 226 299 174 33 chr11 22048871 22049112 -128734441 - L2 LINE L2 -404 2910 2636 2137 120 3 0 chr11 22049116 22049408 -128734145 - AluSx SINE Alu -19 293 1 198 252 70 19 chr11 22049532 22049615 -128733938 - MIR SINE MIR -118 90 7 227 175 0 53 chr11 22049831 22049888 -128733665 - L1ME4a LINE L1 -100 6021 5968 346 251 22 78 chr11 22050606 22050837 -128732716 - L1ME4a LINE L1 -287 5834 5617 196 404 10 0 chr11 22051285 22051389 -128732164 + MIR3 SINE MIR 87 191 -17 241 313 183 9 chr11 22052112 22052227 -128731326 + L2 LINE L2 3175 3309 -4 638 255 66 33 chr11 22052310 22052522 -128731031 + MIR SINE MIR 3 221 -41 252 86 0 0 chr11 22052631 22052666 -128730887 + (TG)n Simple_repeat Simple_repeat 2 36 0 1924 150 0 45 chr11 22052676 22052989 -128730564 - AluSx SINE Alu -13 299 1 21 0 0 0 chr11 22052989 22053010 -128730543 + AT_rich Low_complexity Low_complexity 1 21 0 243 0 0 0 chr11 22103069 22103096 -128680457 + (T)n Simple_repeat Simple_repeat 1 27 0 225 207 0 17 chr11 22103096 22103154 -128680399 - L1ME LINE L1 -435 5729 5673 * 1360 279 65 27 chr11 22103150 22103824 -128679729 - L1MEc LINE L1 -4159 2237 1538 307 173 37 43 chr11 22103840 22103963 -128679590 - L1M4b LINE L1 -3952 3005 2882 2544 85 12 75 chr11 22104022 22104201 -128679352 + THE1C LTR MaLR 1 143 -232 1323 47 24 0 chr11 22104201 22104371 -128679182 + L1PA4 LINE L1 5981 6154 -1 2544 85 12 75 chr11 22104371 22104591 -128678962 + THE1C LTR MaLR 143 375 0 10173 127 32 7 chr11 22104591 22106133 -128677420 + THE1C-int LTR MaLR 1 1580 0 2483 118 30 3 chr11 22106133 22106498 -128677055 + THE1C LTR MaLR 1 375 0 310 244 118 17 chr11 22106505 22106624 -128676929 - L1MA9 LINE L1 -88 6224 6094 313 277 24 80 chr11 22106879 22107092 -128676461 - L1M4b LINE L1 -4436 2702 2502 3848 232 49 31 chr11 22107393 22108984 -128674569 - L1M4b LINE L1 -4640 2319 702 835 319 21 12 chr11 22109256 22109592 -128673961 - L1MEc LINE L1 -5977 419 81 30 45 0 0 chr11 22109785 22109829 -128673724 + AT_rich Low_complexity Low_complexity 1 44 0 282 303 101 53 chr11 22111052 22111240 -128672313 - L2 LINE L2 0 3313 3117 318 200 27 0 chr11 22111273 22111348 -128672205 - MER58 DNA MER1_type 0 2420 2344 26 30 0 0 chr11 22111382 22111415 -128672138 + AT_rich Low_complexity Low_complexity 1 33 0 208 283 0 0 chr11 22111561 22111621 -128671932 + CT-rich Low_complexity Low_complexity 2 61 0 219 381 67 8 chr11 22112573 22112707 -128670846 + L3b LINE CR1 1417 1558 -25 372 306 99 22 chr11 22113268 22113490 -128670063 - MIR SINE MIR -16 246 8 216 343 57 29 chr11 22113532 22113637 -128669916 - MIR SINE MIR -78 130 23 231 114 0 0 chr11 22113658 22113693 -128669860 + (TA)n Simple_repeat Simple_repeat 1 35 0 409 286 97 9 chr11 22114336 22114635 -128668918 - MLT1J LTR MaLR 0 409 68 1465 16 0 11 chr11 22114745 22114927 -128668626 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 349 186 86 0 chr11 22115008 22115078 -128668475 - MER96 DNA MER1_type? -93 82 7 1348 220 111 30 chr11 22116114 22116546 -128667007 + MLT1C LTR MaLR 1 467 0 2413 90 0 0 chr11 22117183 22117493 -128666060 - AluY SINE Alu -1 310 1 1789 169 179 15 chr11 22117507 22117662 -128665891 + MLT1C LTR MaLR 3 131 -336 351 0 0 0 chr11 22117662 22117701 -128665852 + (CA)n Simple_repeat Simple_repeat 2 40 0 279 0 0 0 chr11 22117700 22117731 -128665822 + (GA)n Simple_repeat Simple_repeat 2 32 0 * 1789 169 179 15 chr11 22117701 22117971 -128665582 + MLT1C LTR MaLR 131 463 -4 190 324 176 0 chr11 22119089 22119191 -128664362 + L2 LINE L2 3147 3266 -6 219 254 0 0 chr11 22119258 22119313 -128664240 - MIR SINE MIR -8 254 200 1786 167 10 13 chr11 22119401 22119713 -128663840 + AluJo SINE Alu 2 312 0 339 85 0 0 chr11 22119739 22119786 -128663767 + (GA)n Simple_repeat Simple_repeat 2 48 0 390 370 65 4 chr11 22120042 22120288 -128663265 + L2 LINE L2 2572 2832 -482 966 234 18 14 chr11 22120620 22120842 -128662711 - MER58A DNA MER1_type 0 224 2 248 336 58 0 chr11 22120842 22120946 -128662607 + L2 LINE L2 3195 3304 -9 224 353 38 23 chr11 22121675 22121837 -128661716 + MIR SINE MIR 16 180 -53 22 0 0 0 chr11 22121972 22121994 -128661559 + AT_rich Low_complexity Low_complexity 1 22 0 343 328 35 0 chr11 22122267 22122383 -128661170 - MIR3 SINE MIR -17 191 72 475 245 46 87 chr11 22123088 22123329 -128660224 - MLT1K LTR MaLR -36 552 322 42 36 0 0 chr11 22123507 22123563 -128659990 + AT_rich Low_complexity Low_complexity 1 56 0 352 158 51 62 chr11 22123563 22123740 -128659813 + (TATAA)n Simple_repeat Simple_repeat 5 179 0 390 308 58 12 chr11 22123899 22124071 -128659482 + MIR SINE MIR 69 248 -14 708 305 43 4 chr11 22124119 22124352 -128659201 - L2 LINE L2 -176 3137 2896 2101 129 6 3 chr11 22124364 22124675 -128658878 + AluSp SINE Alu 1 312 -1 364 299 59 48 chr11 22125524 22125711 -128657842 + MIR SINE MIR 64 252 -10 192 368 66 29 chr11 22125922 22126058 -128657495 - L2 LINE L2 -457 2857 2717 309 367 47 7 chr11 22127683 22127833 -128655720 - L2 LINE L2 0 3272 3117 1391 211 54 90 chr11 22127902 22128381 -128655172 + MLT1C LTR MaLR 6 467 0 271 348 36 0 chr11 22128435 22128547 -128655006 - L2 LINE L2 -225 3047 2932 1166 323 55 23 chr11 22128719 22129465 -128654088 + L2 LINE L2 2553 3313 0 430 200 219 32 chr11 22130364 22130519 -128653034 - MIR SINE MIR -71 191 8 318 280 64 45 chr11 22131050 22131207 -128652346 - MIR SINE MIR -48 214 55 208 323 0 7 chr11 22131345 22131430 -128652123 + CT-rich Low_complexity Low_complexity 3 135 0 240 309 65 32 chr11 22131536 22131659 -128651894 + MIR SINE MIR 56 182 -80 672 303 40 9 chr11 22132397 22132625 -128650928 - MIR SINE MIR -9 253 19 855 267 43 93 chr11 22132944 22133364 -128650189 + L2 LINE L2 2915 3313 0 624 261 24 81 chr11 22133380 22133591 -128649962 - MER20 DNA MER1_type -5 214 16 192 310 17 17 chr11 22133635 22133693 -128649860 + L2 LINE L2 3241 3298 -15 5942 148 13 4 chr11 22133702 22135409 -128648144 - L1PB2 LINE L1 0 6151 4430 1223 123 5 0 chr11 22135432 22135619 -128647934 - AluSg/x SINE Alu -4 306 119 252 0 0 0 chr11 22135734 22135762 -128647791 + (A)n Simple_repeat Simple_repeat 1 28 0 439 222 154 25 chr11 22135814 22135976 -128647577 - MER112 DNA MER1_type -7 253 71 320 333 25 98 chr11 22136299 22136612 -128646941 + L2 LINE L2 2952 3241 -31 449 320 65 8 chr11 22136612 22136848 -128646705 + MIR SINE MIR 2 248 -14 817 200 12 30 chr11 22137228 22137393 -128646160 - MER20 DNA MER1_type 0 219 58 24 53 0 0 chr11 22137788 22137826 -128645727 + AT_rich Low_complexity Low_complexity 1 38 0 26 0 0 0 chr11 22138372 22138398 -128645155 + AT_rich Low_complexity Low_complexity 1 26 0 333 0 0 0 chr11 22138585 22138622 -128644931 + (CA)n Simple_repeat Simple_repeat 2 38 0 246 273 80 11 chr11 22138800 22138888 -128644665 + L2 LINE L2 3184 3277 -36 466 280 60 55 chr11 22138926 22139165 -128644388 - MIR SINE MIR 0 262 22 273 325 87 16 chr11 22139809 22139935 -128643618 + MIR SINE MIR 29 163 -99 256 296 62 0 chr11 22140168 22140249 -128643304 - MIR SINE MIR -11 251 166 180 0 0 0 chr11 22140681 22140701 -128642852 + (T)n Simple_repeat Simple_repeat 1 20 0 336 339 54 15 chr11 22141222 22141352 -128642201 - L2 LINE L2 0 3272 3138 361 277 58 16 chr11 22141510 22141698 -128641855 + L1ME LINE L1 5577 5772 -349 251 268 125 27 chr11 22141919 22142031 -128641522 - MIR SINE MIR -2 260 138 250 277 64 21 chr11 22143956 22144050 -128639503 - MER5A DNA MER1_type -45 144 47 2085 205 121 11 chr11 22145504 22145977 -128637576 - MLT1F1 LTR MaLR -42 525 1 414 39 0 0 chr11 22146198 22146250 -128637303 + (TG)n Simple_repeat Simple_repeat 1 52 0 8669 214 16 8 chr11 22146365 22149204 -128634349 - L1PA16 LINE L1 -6 6160 3304 881 201 12 18 chr11 22149210 22149379 -128634174 - MER20 DNA MER1_type 0 219 52 335 122 0 0 chr11 22149379 22149428 -128634125 - L1MA6 LINE L1 -108 6192 6144 339 180 16 0 chr11 22149466 22149527 -128634026 - MER20 DNA MER1_type -152 67 6 243 88 0 0 chr11 22149568 22149602 -128633951 + (TA)n Simple_repeat Simple_repeat 2 35 0 1829 135 0 0 chr11 22150033 22150299 -128633254 - AluSx SINE Alu -12 300 35 227 338 0 14 chr11 22152348 22152419 -128631134 - MIR SINE MIR -173 89 20 594 283 26 44 chr11 22152615 22152841 -128630712 + MIR SINE MIR 13 234 -28 216 343 0 0 chr11 22152877 22152950 -128630603 - MIR SINE MIR -127 135 63 223 313 219 10 chr11 22153478 22153574 -128629979 + MIR SINE MIR 32 147 -61 242 335 64 35 chr11 22154760 22154981 -128628572 + L2 LINE L2 2736 2959 -313 288 120 0 0 chr11 22154999 22155049 -128628504 + (TA)n Simple_repeat Simple_repeat 1 50 0 538 162 105 9 chr11 22155144 22155249 -128628304 - 5S rRNA rRNA -6 115 1 1262 290 50 40 chr11 22155255 22155773 -128627780 + L2 LINE L2 2381 2903 -411 3595 23 0 5 chr11 22155784 22156217 -128627336 - L1PA3 LINE L1 0 6155 5725 26 30 0 0 chr11 22156256 22156289 -128627264 + AT_rich Low_complexity Low_complexity 1 33 0 769 318 120 0 chr11 22156323 22156647 -128626906 + L2 LINE L2 2942 3304 -9 334 311 154 39 chr11 22156798 22157103 -128626450 + L2 LINE L2 2455 2794 -520 1069 269 25 45 chr11 22158427 22158825 -128624728 + L2 LINE L2 2924 3313 0 235 360 52 15 chr11 22158827 22158963 -128624590 - MIR SINE MIR -109 153 13 443 299 60 50 chr11 22159223 22159424 -128624129 - MIR SINE MIR -40 222 20 211 179 71 71 chr11 22159616 22159672 -128623881 + MIR SINE MIR 66 121 -141 280 245 78 0 chr11 22160518 22160610 -128622943 - MIR SINE MIR -63 145 54 2163 253 59 8 chr11 22160934 22161594 -128621959 - L1ME3A LINE L1 -181 5989 5296 269 50 0 25 chr11 22161695 22161735 -128621818 + (TAA)n Simple_repeat Simple_repeat 3 41 0 2531 263 157 102 chr11 22161738 22163000 -128620553 - HAL1 LINE L1 -185 2322 765 543 202 101 31 chr11 22163000 22163129 -128620424 - AluJb SINE Alu -25 287 150 2531 263 157 102 chr11 22163129 22163937 -128619616 - HAL1 LINE L1 -1742 765 3 210 379 32 41 chr11 22164512 22164731 -128618822 + L3 LINE CR1 607 823 -754 559 330 16 47 chr11 22165416 22165674 -128617879 - MIR SINE MIR -12 250 1 261 209 0 0 chr11 22165722 22165789 -128617764 + (TA)n Simple_repeat Simple_repeat 1 67 0 325 183 84 0 chr11 22168703 22168774 -128614779 - L1ME4a LINE L1 -16 6105 6029 22 0 0 0 chr11 22168931 22168953 -128614600 + AT_rich Low_complexity Low_complexity 1 22 0 1050 207 115 72 chr11 22169015 22169363 -128614190 + MLT1A1 LTR MaLR 1 363 -2 37 23 0 0 chr11 22169368 22169412 -128614141 + AT_rich Low_complexity Low_complexity 1 44 0 211 372 0 12 chr11 22170777 22170863 -128612690 + MIR3 SINE MIR 83 167 -41 771 286 128 8 chr11 22170878 22171112 -128612441 - MIR SINE MIR 0 262 1 233 346 91 35 chr11 22171500 22171754 -128611799 - L3 LINE CR1 -7 1570 1303 391 300 65 35 chr11 22171785 22171955 -128611598 - L3 LINE CR1 -742 835 661 377 324 126 0 chr11 22173100 22173282 -128610271 + MIR SINE MIR 29 233 -29 516 229 35 28 chr11 22174689 22174833 -128608720 - MLT1K LTR MaLR -23 565 421 12052 171 76 4 chr11 22175051 22177338 -128606215 - L1PBa LINE L1 -4412 2451 1 293 265 0 0 chr11 22177669 22177737 -128605816 - MER58B DNA MER1_type -16 325 258 2365 93 0 3 chr11 22177841 22178153 -128605400 + AluY SINE Alu 1 311 0 990 98 0 0 chr11 22178316 22178449 -128605104 - AluSq/x SINE Alu -180 133 1 258 81 0 0 chr11 22178452 22178489 -128605064 + (TTG)n Simple_repeat Simple_repeat 3 39 0 9605 211 33 17 chr11 22178489 22181003 -128602550 - L1 LINE L1 -1760 4386 1843 1534 222 47 33 chr11 22181285 22181709 -128601844 - L1ME2 LINE L1 -10 6154 5725 289 137 0 39 chr11 22181825 22181876 -128601677 - MLT1K LTR MaLR -531 57 9 243 305 137 0 chr11 22182558 22182653 -128600900 - MIR3 SINE MIR -11 197 90 219 299 90 42 chr11 22184490 22184657 -128598896 - MIR SINE MIR 0 262 88 1882 145 97 0 chr11 22184775 22185126 -128598427 - L1MA4 LINE L1 -2 6298 5914 2038 147 0 0 chr11 22185215 22185521 -128598032 + AluJb SINE Alu 1 306 -6 344 323 75 38 chr11 22186129 22186315 -128597238 - MER117 DNA MER1_type -1 196 4 1915 22 0 0 chr11 22186607 22186836 -128596717 - L1PA3 LINE L1 -851 5295 5067 7045 34 0 0 chr11 22186837 22187673 -128595880 + L1PA3 LINE L1 5317 6152 -3 33 0 0 0 chr11 22187673 22187706 -128595847 + AT_rich Low_complexity Low_complexity 1 33 0 237 228 0 0 chr11 22187965 22188022 -128595531 + GA-rich Low_complexity Low_complexity 2 58 0 28 79 0 0 chr11 22188037 22188100 -128595453 + AT_rich Low_complexity Low_complexity 1 63 0 240 217 33 0 chr11 22188480 22188540 -128595013 + GA-rich Low_complexity Low_complexity 2 63 0 422 311 76 42 chr11 22189076 22189314 -128594239 + MIR SINE MIR 3 248 -14 646 225 17 29 chr11 22189634 22189807 -128593746 - MER96B DNA MER1_type? -5 412 242 439 319 100 2 chr11 22190425 22190645 -128592908 - MIR SINE MIR 0 262 25 184 339 40 32 chr11 22191585 22191709 -128591844 - MIR SINE MIR -117 145 21 435 254 153 16 chr11 22194983 22195172 -128588381 - MIR SINE MIR -43 219 5 218 271 0 14 chr11 22195248 22195318 -128588235 + CT-rich Low_complexity Low_complexity 2 70 0 408 244 71 24 chr11 22196027 22196154 -128587399 - MIR SINE MIR -5 257 125 269 336 47 28 chr11 22196187 22196294 -128587259 - L2 LINE L2 -1 3271 3163 724 324 68 21 chr11 22196718 22197054 -128586499 + MLT1I LTR MaLR 44 395 -14 192 125 0 0 chr11 22198121 22198153 -128585400 + (TG)n Simple_repeat Simple_repeat 2 33 0 340 321 105 34 chr11 22198366 22199253 -128584300 + HAL1 LINE L1 9 1085 -1422 2036 207 17 67 chr11 22199269 22199748 -128583805 + L1M4c LINE L1 32 486 -5898 * 5441 207 37 46 chr11 22199743 22200175 -128583378 + L1M4c LINE L1 1248 1682 -4700 243 0 0 0 chr11 22200175 22200202 -128583351 + (TG)n Simple_repeat Simple_repeat 2 28 0 5441 207 37 46 chr11 22200202 22201164 -128582389 + L1M4c LINE L1 1682 2651 -3731 2097 94 11 17 chr11 22201164 22201451 -128582102 + AluSc SINE Alu 3 287 -22 5441 207 37 46 chr11 22201451 22202416 -128581137 + L1M4c LINE L1 2651 3587 -2795 2111 133 0 0 chr11 22202416 22202725 -128580828 + AluSx SINE Alu 1 309 -3 5441 207 37 46 chr11 22202725 22203194 -128580359 + L1M4c LINE L1 3587 4059 -2323 258 77 0 0 chr11 22203194 22203233 -128580320 + L1M4c LINE L1 4793 4831 -1551 390 212 17 59 chr11 22203251 22203369 -128580184 + L1M4c LINE L1 4807 4919 -1463 1515 223 168 0 chr11 22203446 22203840 -128579713 + MLT1D LTR MaLR 46 505 0 484 220 11 44 chr11 22203918 22204100 -128579453 + HAL1 LINE L1 2240 2415 -92 240 245 10 122 chr11 22204378 22204476 -128579077 + L2 LINE L2 3186 3272 0 1871 287 25 33 chr11 22204790 22205403 -128578150 - MLT2E LTR ERVL 0 628 21 619 183 25 17 chr11 22205664 22205784 -128577769 + BC200 scRNA scRNA 1 121 -79 237 250 22 43 chr11 22207970 22208062 -128575491 + MIR SINE MIR 102 191 -71 606 284 36 75 chr11 22209250 22209581 -128573972 + L2 LINE L2 2996 3313 0 435 333 43 24 chr11 22209947 22210157 -128573396 + MIR SINE MIR 31 244 -18 553 343 28 12 chr11 22210547 22210801 -128572752 - MER90 LTR ERV1 0 614 357 10372 205 48 46 chr11 22210805 22211742 -128571811 - L1MA5 LINE L1 -7 6995 6061 2170 117 3 0 chr11 22211742 22212051 -128571502 - AluSp SINE Alu -2 311 2 10372 205 48 46 chr11 22212051 22214041 -128569512 - L1MA5 LINE L1 -941 6061 4076 2015 143 7 0 chr11 22214041 22214348 -128569205 - AluSc SINE Alu 0 309 1 10372 205 48 46 chr11 22214348 22215364 -128568189 - L1MA5 LINE L1 -2926 4076 3063 2193 103 3 0 chr11 22215364 22215654 -128567899 - AluSp SINE Alu -22 291 1 10372 205 48 46 chr11 22215654 22216254 -128567299 - L1MA5 LINE L1 -3939 3063 2414 186 71 0 0 chr11 22216254 22216282 -128567271 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 10372 205 48 46 chr11 22216282 22216806 -128566747 - L1MA5 LINE L1 -4588 2414 1892 182 415 24 0 chr11 22218139 22218221 -128565332 - L2 LINE L2 -213 3059 2976 262 282 88 39 chr11 22218675 22218856 -128564697 - L2 LINE L2 -1280 2034 1845 468 0 0 0 chr11 22219326 22219378 -128564175 + (TG)n Simple_repeat Simple_repeat 2 53 0 21 71 0 0 chr11 22219685 22219727 -128563826 + AT_rich Low_complexity Low_complexity 1 42 0 213 324 0 0 chr11 22220597 22220671 -128562882 - L2 LINE L2 0 3313 3240 198 0 0 0 chr11 22221041 22221063 -128562490 + (T)n Simple_repeat Simple_repeat 1 22 0 1512 194 45 45 chr11 22221082 22221478 -128562075 - MSTD LTR MaLR 0 396 1 1472 114 155 42 chr11 22221715 22221979 -128561574 + AluSx SINE Alu 14 307 -5 257 275 66 18 chr11 22221988 22222155 -128561398 - L1ME4a LINE L1 0 6121 5947 232 298 136 25 chr11 22222413 22222611 -128560942 - L1ME4a LINE L1 -439 5682 5463 1304 184 36 0 chr11 22222686 22222963 -128560590 - L1MA1 LINE L1 -1 6301 6015 13307 152 72 35 chr11 22222963 22223411 -128560142 - L1M1 LINE L1 -4102 3463 3033 2102 104 9 35 chr11 22223411 22223728 -128559825 - AluSp SINE Alu -4 309 1 13307 152 72 35 chr11 22223728 22226390 -128557163 - L1M1 LINE L1 -4532 3033 13 28 0 0 0 chr11 22226543 22226571 -128556982 + AT_rich Low_complexity Low_complexity 1 28 0 535 256 19 0 chr11 22226646 22226663 -128556890 - L1MA10 LINE L1 -3 6331 6315 2343 257 50 29 chr11 22226663 22228108 -128555445 - L1ME1 LINE L1 -12 6223 4751 2462 55 10 0 chr11 22229004 22229312 -128554241 + AluY SINE Alu 1 311 0 23 0 0 0 chr11 22229715 22229738 -128553815 + AT_rich Low_complexity Low_complexity 1 23 0 500 242 54 13 chr11 22230354 22230503 -128553050 - L1ME1 LINE L1 -6228 168 14 * 1290 284 58 13 chr11 22230476 22231163 -128552390 - L1MDa LINE L1 -2688 3527 2810 1269 233 39 102 chr11 22231195 22232013 -128551540 - L1MDa LINE L1 -3490 2916 2185 4290 12 0 20 chr11 22232013 22232521 -128551032 - L1PA2 LINE L1 0 6155 5658 1269 233 39 102 chr11 22232521 22232689 -128550864 - L1MDa LINE L1 -4221 2185 2008 1587 216 36 31 chr11 22232694 22233051 -128550502 - MLT1A2 LTR MaLR -15 359 1 561 294 78 10 chr11 22233052 22233351 -128550202 - L1MDa LINE L1 -4522 1884 1651 243 125 0 0 chr11 22233392 22233432 -128550121 + (T)n Simple_repeat Simple_repeat 1 40 0 1638 182 6 46 chr11 22233565 22233889 -128549664 - AluJo SINE Alu 0 312 2 246 267 9 88 chr11 22233894 22234111 -128549442 - L1MDa LINE L1 -4910 1498 1299 1932 107 3 27 chr11 22234133 22234431 -128549122 - AluSx SINE Alu -2 310 20 234 283 118 13 chr11 22234447 22234599 -128548954 - L1MDa LINE L1 -4987 1422 1255 243 253 27 0 chr11 22234682 22234757 -128548796 - L1MDa LINE L1 -6207 380 304 220 104 42 104 chr11 22234880 22234928 -128548625 - L2 LINE L2 -3 3310 3266 377 330 179 29 chr11 22235721 22236469 -128547084 - L2 LINE L2 -837 2477 1618 1174 262 33 24 chr11 22236483 22236906 -128546647 + L1ME4a LINE L1 5499 5925 -196 238 282 43 52 chr11 22237268 22237392 -128546161 - MIR SINE MIR -66 142 13 190 246 14 58 chr11 22239531 22239600 -128543953 + MIR SINE MIR 28 93 -169 227 266 16 0 chr11 22239638 22239702 -128543851 - MER103 DNA DNA -81 85 21 829 282 31 19 chr11 22239838 22240097 -128543456 - MIR SINE MIR 0 262 1 435 351 96 49 chr11 22292199 22292731 -128490822 - L2 LINE L2 -18 3295 2743 24 0 0 0 chr11 22293331 22293355 -128490198 + AT_rich Low_complexity Low_complexity 1 24 0 453 316 84 5 chr11 22293889 22294079 -128489474 - Charlie8 DNA MER1_type -2207 210 6 1471 211 148 34 chr11 22294945 22295385 -128488168 - MLT1D LTR MaLR -7 498 9 1171 177 50 71 chr11 22295722 22295810 -128487743 + AluJo SINE Alu 36 124 -188 282 56 0 0 chr11 22295810 22295846 -128487707 + (TGAA)n Simple_repeat Simple_repeat 2 37 0 1171 177 50 71 chr11 22295846 22296040 -128487513 + AluJo SINE Alu 124 312 0 234 330 43 0 chr11 22296554 22296669 -128486884 - MIR SINE MIR -27 235 116 23 0 0 0 chr11 22297417 22297440 -128486113 + AT_rich Low_complexity Low_complexity 1 23 0 368 316 17 22 chr11 22298398 22298565 -128484988 + MIR SINE MIR 13 180 -28 770 222 30 6 chr11 22298585 22298752 -128484801 + L1PA16 LINE L1 5961 6131 -35 4185 196 33 32 chr11 22299474 22300451 -128483102 + L1MA9 LINE L1 5297 6274 -38 23 33 0 0 chr11 22301019 22301049 -128482504 + AT_rich Low_complexity Low_complexity 1 30 0 193 273 101 50 chr11 22301109 22301161 -128482392 - L2 LINE L2 -15 3298 3250 1450 110 97 0 chr11 22301161 22301398 -128482155 + L1PA13 LINE L1 5899 6158 -5 193 273 101 50 chr11 22301398 22301444 -128482109 - L2 LINE L2 -63 3250 3195 271 297 0 11 chr11 22302425 22302516 -128481037 + (TTCA)n Simple_repeat Simple_repeat 1 90 0 423 296 29 48 chr11 22302635 22302841 -128480712 - MIR SINE MIR -10 252 51 387 264 126 43 chr11 22303010 22303326 -128480227 - LTR33A LTR ERVL -11 512 127 1682 194 31 25 chr11 22303674 22304034 -128479519 + MLT1A1 LTR MaLR 1 362 -3 771 183 35 0 chr11 22305555 22305697 -128477856 + FRAM SINE Alu 17 163 -13 894 341 68 11 chr11 22306029 22306398 -128477155 - L2 LINE L2 -1 3312 2923 346 331 12 6 chr11 22306445 22306614 -128476939 + L1M4 LINE L1 2653 2822 -3324 2184 116 0 0 chr11 22306650 22306944 -128476609 + AluSc SINE Alu 1 294 -15 21 0 0 0 chr11 22306986 22307007 -128476546 + AT_rich Low_complexity Low_complexity 1 21 0 2102 136 49 9 chr11 22307121 22307466 -128476087 + THE1B LTR MaLR 1 359 -5 9950 112 31 43 chr11 22307475 22309075 -128474478 + THE1B-int LTR MaLR 1 1580 0 2243 132 28 11 chr11 22309076 22309433 -128474120 + THE1B LTR MaLR 2 364 0 500 291 77 64 chr11 22309447 22309773 -128473780 + L1PB2 LINE L1 3067 3396 -2750 6359 181 14 9 chr11 22309858 22312431 -128471122 + L1PB2 LINE L1 3516 6149 -2 454 324 34 8 chr11 22312451 22312689 -128470864 + L1M4 LINE L1 3871 4114 -2032 2901 50 14 0 chr11 22312690 22313054 -128470499 - L1PA3 LINE L1 0 6155 5787 13289 48 7 3 chr11 22313154 22315264 -128468289 - L1PA5 LINE L1 -329 5825 3706 235 277 84 0 chr11 22315412 22315531 -128468022 - L1M4 LINE L1 -3313 2833 2705 567 265 77 18 chr11 22315711 22315881 -128467672 - MER20 DNA MER1_type -39 180 1 396 277 31 8 chr11 22316571 22316701 -128466852 - MER117 DNA MER1_type -29 168 36 1778 166 0 7 chr11 22319761 22320044 -128463509 + AluJb SINE Alu 1 281 -31 286 211 26 0 chr11 22320048 22320124 -128463429 + (TA)n Simple_repeat Simple_repeat 2 79 0 1116 270 87 23 chr11 22320168 22320817 -128462736 - L1ME3A LINE L1 -213 5949 5254 485 262 90 57 chr11 22320983 22321495 -128462058 - L1ME3A LINE L1 -1131 5015 4487 26 30 0 0 chr11 22321630 22321663 -128461890 + AT_rich Low_complexity Low_complexity 1 33 0 1261 195 100 0 chr11 22321726 22321967 -128461586 + AluJo SINE Alu 1 265 -47 2102 153 0 0 chr11 22322072 22322380 -128461173 - AluSx SINE Alu -4 308 1 6062 53 8 0 chr11 22322593 22323360 -128460193 + L1PA5 LINE L1 5381 6153 -1 507 247 49 138 chr11 22323385 22323724 -128459829 + L1M4 LINE L1 3718 4009 -2137 1875 122 0 46 chr11 22323724 22324028 -128459525 + AluSx SINE Alu 1 290 -22 507 247 49 138 chr11 22324028 22324138 -128459415 + L1M4 LINE L1 4009 4127 -2019 21 36 0 0 chr11 22324298 22324326 -128459227 + AT_rich Low_complexity Low_complexity 1 28 0 615 227 76 35 chr11 22325215 22325387 -128458166 + MER97b DNA MER1_type? 1 179 -874 2169 123 0 0 chr11 22325583 22325883 -128457670 - AluSg SINE Alu -10 300 1 183 303 103 71 chr11 22326186 22326341 -128457212 + MIR SINE MIR 48 207 -55 919 236 241 30 chr11 22328379 22328840 -128454713 + LTR50 LTR ERVL 43 600 -195 302 209 15 0 chr11 22328917 22328984 -128454569 + LTR50 LTR ERVL 710 777 -18 399 333 15 7 chr11 22329409 22329544 -128454009 + L2 LINE L2 2922 3057 -256 846 104 22 0 chr11 22331810 22331945 -128451608 - L1PA14 LINE L1 0 6161 6024 487 299 6 35 chr11 22332168 22332342 -128451211 + MER5B DNA MER1_type 1 169 -9 1163 305 109 41 chr11 22332815 22333023 -128450530 + L2 LINE L2 1699 1891 -1423 1345 245 51 74 chr11 22333023 22333575 -128449978 + MLT1F LTR MaLR 1 539 -3 1163 305 109 41 chr11 22333575 22334101 -128449452 + L2 LINE L2 1891 2483 -831 315 331 169 0 chr11 22334141 22334277 -128449276 + MER5A DNA MER1_type 31 189 0 196 279 0 116 chr11 22334671 22334757 -128448796 - L2 LINE L2 -3 3269 3194 239 391 51 70 chr11 22335254 22335510 -128448043 + L2 LINE L2 3007 3257 -15 396 204 23 0 chr11 22335763 22335851 -128447702 + L1MA9 LINE L1 6218 6307 -5 445 91 13 13 chr11 22336091 22336168 -128447385 + (TA)n Simple_repeat Simple_repeat 2 78 0 1999 149 0 3 chr11 22336252 22336553 -128447000 + AluSx SINE Alu 3 302 -10 267 245 53 21 chr11 22336654 22336748 -128446805 - L1ME LINE L1 -338 5783 5687 216 283 0 0 chr11 22337194 22337240 -128446313 + L2 LINE L2 3218 3263 -9 195 313 16 0 chr11 22337251 22337315 -128446238 + MIR SINE MIR 74 138 -124 212 320 105 26 chr11 22337659 22337812 -128445741 - L3 LINE CR1 -32 1545 1381 220 156 0 0 chr11 22338140 22338172 -128445381 + MER91B DNA MER1_type 30 61 -129 239 200 140 20 chr11 22338201 22338301 -128445252 - MER112 DNA MER1_type -43 217 106 810 294 12 20 chr11 22338341 22338586 -128444967 + MIR SINE MIR 1 243 -19 243 188 116 29 chr11 22338665 22338734 -128444819 - MER112 DNA MER1_type -185 75 1 200 297 5 108 chr11 22339229 22339414 -128444139 + MIR SINE MIR 49 214 -48 21 0 0 0 chr11 22339587 22339608 -128443945 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr11 22339957 22339985 -128443568 + AT_rich Low_complexity Low_complexity 1 28 0 848 251 54 34 chr11 22340092 22340600 -128442953 - MER76 LTR ERV -66 622 41 209 33 33 0 chr11 22341965 22341995 -128441558 + (TC)n Simple_repeat Simple_repeat 2 32 0 1045 179 0 0 chr11 22342733 22342901 -128440652 + FAM SINE Alu 2 169 -6 1838 244 86 41 chr11 22342934 22343564 -128439989 - MER76 LTR ERV -30 658 1 2299 254 47 32 chr11 22343857 22344478 -128439075 - MER21B LTR ERV1 -134 729 100 248 188 0 42 chr11 22344553 22344601 -128438952 - MER21B LTR ERV1 -778 85 40 281 352 0 0 chr11 22346183 22346288 -128437265 + MER103 DNA DNA 1 105 -61 426 20 0 0 chr11 22347237 22347288 -128436265 + (TA)n Simple_repeat Simple_repeat 1 51 0 1584 282 93 33 chr11 22347299 22348202 -128435351 + L2 LINE L2 2338 3313 0 25 0 0 0 chr11 22348259 22348284 -128435269 + AT_rich Low_complexity Low_complexity 1 25 0 224 288 25 59 chr11 22348484 22348602 -128434951 - MIR SINE MIR -86 176 63 329 331 35 29 chr11 22350164 22350336 -128433217 - MIR SINE MIR -34 228 56 382 338 31 6 chr11 22350541 22350701 -128432852 + MIR3 SINE MIR 38 201 -7 468 326 98 5 chr11 22350805 22351020 -128432533 - MIR SINE MIR -15 247 13 234 0 0 0 chr11 22351246 22351272 -128432281 + (ATATG)n Simple_repeat Simple_repeat 3 28 0 4909 205 42 53 chr11 22351323 22352500 -128431053 + L1MB8 LINE L1 3711 4899 -1279 1528 203 13 16 chr11 22352500 22352810 -128430743 - AluJo SINE Alu 0 312 4 4909 205 42 53 chr11 22352810 22353357 -128430196 + L1MB8 LINE L1 4899 5451 -727 1695 130 0 0 chr11 22353357 22353596 -128429957 + AluSx SINE Alu 58 296 -16 4909 205 42 53 chr11 22353596 22354366 -128429187 + L1MB8 LINE L1 5451 6172 -6 400 306 50 40 chr11 22354763 22354962 -128428591 - L3 LINE CR1 -141 1436 1236 282 239 65 43 chr11 22355012 22355104 -128428449 + MIR SINE MIR 80 173 -89 269 257 40 0 chr11 22355732 22355806 -128427747 - MIR SINE MIR -79 183 107 300 309 0 0 chr11 22356011 22356079 -128427474 + MIR SINE MIR 38 105 -103 2217 150 17 3 chr11 22356257 22356616 -128426937 + THE1B LTR MaLR 1 364 0 10752 107 9 29 chr11 22356617 22358228 -128425325 + THE1B-int LTR MaLR 2 1580 0 2400 124 6 6 chr11 22358228 22358592 -128424961 + THE1B LTR MaLR 1 364 0 2061 178 88 15 chr11 22358712 22359190 -128424363 + Charlie1b DNA MER1_type 11 523 0 233 241 92 23 chr11 22359954 22360041 -128423512 + MLT1H LTR MaLR 205 297 -252 663 249 165 8 chr11 22361188 22361425 -128422128 + ORSL DNA AcHobo 2 275 0 1175 228 24 61 chr11 22361994 22362372 -128421181 + MLT1A1 LTR MaLR 2 365 0 331 266 188 26 chr11 22362396 22362550 -128421003 + MER5A DNA MER1_type 9 187 -2 273 347 81 9 chr11 22363455 22363677 -128419876 + L1 LINE L1 3595 3832 -2314 338 312 54 18 chr11 22364137 22364413 -128419140 - L1ME3A LINE L1 -217 5953 5668 311 164 16 33 chr11 22364443 22364504 -128419049 + MER3 DNA MER1_type 1 60 -149 210 278 17 26 chr11 22364657 22364772 -128418781 + T-rich Low_complexity Low_complexity 2 115 0 293 323 44 75 chr11 22365332 22365694 -128417859 + MER31-int LTR ERV1 3677 4027 -909 233 246 33 0 chr11 22366430 22366491 -128417062 - MIR SINE MIR 0 262 200 2219 161 52 15 chr11 22366491 22366810 -128416743 + L1MA9 LINE L1 5825 6168 -144 240 59 0 0 chr11 22366810 22366844 -128416709 + (CA)n Simple_repeat Simple_repeat 1 34 0 2219 161 52 15 chr11 22366844 22366990 -128416563 + L1MA9 LINE L1 6168 6307 -5 369 242 11 0 chr11 22367140 22367235 -128416318 + MER69 DNA AcHobo 2430 2525 -1 473 276 31 24 chr11 22367238 22367365 -128416188 - MIR SINE MIR -129 133 6 243 314 92 65 chr11 22367553 22367706 -128415847 - MIR SINE MIR -95 167 11 226 297 127 8 chr11 22367792 22367910 -128415643 - MIR SINE MIR -60 202 71 36 62 0 0 chr11 22368903 22368967 -128414586 + AT_rich Low_complexity Low_complexity 1 64 0 543 267 83 107 chr11 22369161 22369834 -128413719 - L1ME3A LINE L1 -230 6009 5354 277 270 6 30 chr11 22370036 22370163 -128413390 - L1ME3A LINE L1 -1134 5081 4956 924 278 83 53 chr11 22370186 22370657 -128412896 - L2 LINE L2 0 3313 2829 209 182 23 0 chr11 22370715 22370759 -128412794 - L2 LINE L2 -582 2732 2688 973 319 48 23 chr11 22370770 22371165 -128412388 - MLT1I LTR MaLR 0 409 5 566 265 114 18 chr11 22371174 22371446 -128412107 - L2 LINE L2 -620 2694 2397 260 250 56 19 chr11 22371516 22371624 -128411929 + LTR33A LTR ERVL 411 522 -1 428 283 48 54 chr11 22371887 22372350 -128411203 - L1ME3A LINE L1 -1373 4842 4383 263 225 110 37 chr11 22372436 22372654 -128410899 - L1ME3A LINE L1 -4130 2266 2033 351 328 87 6 chr11 22372928 22373111 -128410442 + MLT1H1 LTR MaLR 1 198 -357 252 198 0 123 chr11 22373308 22373414 -128410139 + MLT1E3 LTR MaLR 528 620 -4 1780 138 55 0 chr11 22373422 22373749 -128409804 + L1MA9 LINE L1 5946 6290 -22 290 51 34 34 chr11 22373829 22373888 -128409665 + (TTTTA)n Simple_repeat Simple_repeat 2 60 0 273 30 30 60 chr11 22373929 22373996 -128409557 + (TTTTA)n Simple_repeat Simple_repeat 1 65 0 2450 18 0 0 chr11 22373996 22374278 -128409275 - L1PA2 LINE L1 -13 6142 5861 946 227 73 5 chr11 22374393 22374613 -128408940 - MLT1A1 LTR MaLR -1 364 130 1788 218 68 16 chr11 22374645 22375159 -128408394 - L1MD3 LINE L1 -16 7979 7439 209 284 81 0 chr11 22375409 22375483 -128408070 + MIR SINE MIR 70 149 -113 3127 185 30 3 chr11 22375724 22376347 -128407206 + L1PB4 LINE L1 5506 6145 -11 323 318 35 38 chr11 22376396 22376592 -128406961 - MIR SINE MIR -50 212 17 29 84 0 0 chr11 22376856 22376927 -128406626 + AT_rich Low_complexity Low_complexity 1 71 0 2127 106 0 44 chr11 22377045 22377365 -128406188 - AluSc SINE Alu -3 306 1 477 327 39 0 chr11 22377646 22377799 -128405754 - MIR SINE MIR -67 195 37 194 31 0 62 chr11 22377826 22377858 -128405695 + (CAAAAA)n Simple_repeat Simple_repeat 1 30 0 1135 278 37 14 chr11 22378064 22378270 -128405283 - L1MD2 LINE L1 -10 6349 6130 207 0 0 0 chr11 22378270 22378293 -128405260 + (TG)n Simple_repeat Simple_repeat 2 24 0 1135 278 37 14 chr11 22378293 22378438 -128405115 - L1MD2 LINE L1 -229 6130 5990 203 301 121 0 chr11 22378771 22378854 -128404699 + MIR SINE MIR 59 151 -111 192 228 129 99 chr11 22379156 22379257 -128404296 - MIR SINE MIR -75 133 30 247 359 35 12 chr11 22379352 22379531 -128404022 + MIR3 SINE MIR 10 191 -67 343 274 14 27 chr11 22379630 22379776 -128403777 + (TATATG)n Simple_repeat Simple_repeat 3 146 0 185 263 44 79 chr11 22379961 22380075 -128403478 - MIR3 SINE MIR -7 201 92 578 262 7 14 chr11 22380469 22380614 -128402939 - MER5B DNA MER1_type 0 178 35 23 0 0 0 chr11 22380634 22380657 -128402896 + AT_rich Low_complexity Low_complexity 1 23 0 191 286 20 0 chr11 22380657 22380706 -128402847 + MER5B DNA MER1_type 129 178 0 214 242 0 16 chr11 22380751 22380813 -128402740 + (CTAG)n Simple_repeat Simple_repeat 3 63 0 858 308 64 31 chr11 22381225 22381680 -128401873 - L2 LINE L2 -11 3302 2833 320 125 16 0 chr11 22381693 22381757 -128401796 + CT-rich Low_complexity Low_complexity 2 66 0 232 221 0 104 chr11 22381847 22381924 -128401629 - L1M3de LINE L1 -6163 490 422 195 370 94 0 chr11 22381924 22382051 -128401502 - MIR3 SINE MIR -60 148 10 26 74 0 0 chr11 22382251 22382305 -128401248 + AT_rich Low_complexity Low_complexity 1 54 0 234 330 11 32 chr11 22382898 22382992 -128400561 + MIR SINE MIR 20 111 -151 279 282 120 14 chr11 22383181 22383323 -128400230 + L1M4 LINE L1 4204 4360 -1786 23 0 0 0 chr11 22383324 22383347 -128400206 + AT_rich Low_complexity Low_complexity 1 23 0 31490 33 15 1 chr11 22383348 22389369 -128394184 - L1PA3 LINE L1 -1 6154 2 1084 254 43 59 chr11 22390667 22391108 -128392445 - L1ME2 LINE L1 -7 6157 5724 6350 196 41 59 chr11 22391869 22393061 -128390492 - L1MA9 LINE L1 -233 6079 4867 896 228 0 0 chr11 22393061 22393219 -128390334 - FRAM SINE Alu -8 158 1 6350 196 41 59 chr11 22393219 22394585 -128388968 - L1MA9 LINE L1 -1445 4867 3562 218 233 10 33 chr11 22394687 22394757 -128388796 + GA-rich Low_complexity Low_complexity 3 51 0 413 288 17 8 chr11 22394757 22394875 -128388678 + L2 LINE L2 3195 3313 0 316 313 70 0 chr11 22395772 22395887 -128387666 + L2 LINE L2 3191 3313 0 251 331 89 3 chr11 22395931 22396097 -128387456 - MIR SINE MIR -66 142 3 585 262 32 27 chr11 22396409 22396596 -128386957 + MER58A DNA MER1_type 37 224 0 816 233 0 6 chr11 22396748 22396911 -128386642 + FRAM SINE Alu 1 162 -14 240 323 132 37 chr11 22396987 22397072 -128386481 - MIR SINE MIR -17 245 170 2138 99 10 7 chr11 22397072 22397365 -128386188 - AluSx SINE Alu -18 294 1 240 323 132 37 chr11 22397365 22397468 -128386085 - MIR SINE MIR -92 170 39 456 314 97 17 chr11 22397597 22397984 -128385569 - LTR16A LTR ERVL -7 443 1 369 287 69 35 chr11 22397985 22398187 -128385366 - HERV16 LTR ERVL -1 4995 4787 258 375 40 23 chr11 22398227 22398526 -128385027 - ERVL LTR ERVL -531 5233 4930 340 383 122 0 chr11 22399706 22399902 -128383651 - HAL1b LINE L1 -819 529 310 7241 32 14 0 chr11 22400086 22401083 -128382470 + L1PA4 LINE L1 5142 6150 -5 225 0 0 0 chr11 22401090 22401115 -128382438 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 22 56 0 0 chr11 22401560 22401596 -128381957 + AT_rich Low_complexity Low_complexity 1 36 0 30 0 0 0 chr11 22401732 22401762 -128381791 + AT_rich Low_complexity Low_complexity 1 30 0 4762 224 81 33 chr11 22402002 22402858 -128380695 + Charlie1a DNA MER1_type 1 951 -1810 2357 92 0 16 chr11 22402858 22403173 -128380380 + AluSg SINE Alu 1 310 0 4762 224 81 33 chr11 22403173 22403697 -128379856 + Charlie1a DNA MER1_type 951 1448 -7 594 292 84 8 chr11 22404220 22404600 -128378953 + L1ME4a LINE L1 5522 5930 -191 3463 248 81 27 chr11 22405057 22406102 -128377451 + L1MC1 LINE L1 393 1525 -5065 989 245 54 36 chr11 22406125 22406719 -128376834 + L1MC1 LINE L1 1631 3819 -2721 18451 104 10 3 chr11 22406861 22410370 -128373183 - L1PA7 LINE L1 -5 6149 2615 8487 112 5 13 chr11 22410372 22411681 -128371872 + L1PA7 LINE L1 1294 2591 -3555 264 230 59 67 chr11 22411840 22411975 -128371578 + L1MC1 LINE L1 4014 4147 -2393 2180 88 0 14 chr11 22411975 22412271 -128371282 + AluY SINE Alu 1 292 -19 234 0 0 0 chr11 22412289 22412315 -128371238 + (CA)n Simple_repeat Simple_repeat 2 27 0 329 273 23 0 chr11 22412315 22412403 -128371150 - L1MC4 LINE L1 -1339 6703 6614 2446 264 94 12 chr11 22412403 22413353 -128370200 + L1MC1 LINE L1 4139 5166 -1374 1736 218 65 30 chr11 22413378 22413721 -128369832 + L1MC1 LINE L1 5420 5750 -886 327 25 0 0 chr11 22413721 22413761 -128369792 + (CA)n Simple_repeat Simple_repeat 2 41 0 1736 218 65 30 chr11 22413761 22414145 -128369408 + L1MC1 LINE L1 5750 6169 -467 198 0 0 0 chr11 22414145 22414167 -128369386 + (A)n Simple_repeat Simple_repeat 1 22 0 243 0 0 0 chr11 22414597 22414624 -128368929 + (A)n Simple_repeat Simple_repeat 1 27 0 1353 177 78 0 chr11 22414663 22414946 -128368607 + L1MC1 LINE L1 6421 6725 -2 211 360 60 0 chr11 22415208 22415308 -128368245 + MIR SINE MIR 152 257 -5 529 306 46 6 chr11 22415328 22415501 -128368052 - MIR SINE MIR -71 191 12 1062 222 114 43 chr11 22416001 22416370 -128367183 + MSTD LTR MaLR 1 395 -1 2249 251 79 38 chr11 22416899 22417452 -128366101 - L1ME1 LINE L1 -5 6161 5552 2402 91 0 3 chr11 22417452 22417761 -128365792 + AluY SINE Alu 2 309 -2 2249 251 79 38 chr11 22417761 22418182 -128365371 - L1ME1 LINE L1 -614 5552 5150 232 256 23 0 chr11 22418598 22418684 -128364869 + CT-rich Low_complexity Low_complexity 3 90 0 191 414 29 10 chr11 22418693 22418797 -128364756 - L2 LINE L2 -1 3312 3207 231 349 15 38 chr11 22420489 22420621 -128362932 - LTR67 LTR ERVL -37 520 392 216 178 44 0 chr11 22420915 22420960 -128362593 - MIR SINE MIR -179 83 37 200 258 76 30 chr11 22421254 22421320 -128362233 + L3 LINE CR1 1507 1575 -2 214 337 48 24 chr11 22422032 22422115 -128361438 - MIR SINE MIR -107 101 17 914 200 55 0 chr11 22422134 22422299 -128361254 - MER5A DNA MER1_type -15 174 1 280 208 269 23 chr11 22422428 22422558 -128360995 + Charlie8 DNA MER1_type 81 242 -2175 228 231 115 39 chr11 22422652 22422730 -128360823 - MIR SINE MIR -12 250 167 433 158 17 0 chr11 22422761 22422881 -128360672 + (TA)n Simple_repeat Simple_repeat 1 122 0 835 285 45 18 chr11 22423033 22423254 -128360299 - MIR SINE MIR -35 227 1 237 384 24 24 chr11 22423289 22423414 -128360139 - MIR3 SINE MIR -48 160 36 558 237 59 18 chr11 22423536 22423705 -128359848 + MER5B DNA MER1_type 3 178 0 302 393 16 8 chr11 22424344 22424466 -128359087 + L2 LINE L2 3104 3226 -46 245 33 0 0 chr11 22424901 22424955 -128358598 - AluSp/q SINE Alu 0 308 255 630 282 160 51 chr11 22425121 22425155 -128358398 + MLT1H LTR MaLR 110 139 -410 2048 205 75 16 chr11 22425155 22425594 -128357959 - MLT1C LTR MaLR 0 467 3 630 282 160 51 chr11 22425594 22425953 -128357600 + MLT1H LTR MaLR 139 546 -3 766 295 15 75 chr11 22426407 22426807 -128356746 - L3 LINE CR1 -1 1576 1201 2138 116 10 0 chr11 22427509 22427810 -128355743 + AluSc SINE Alu 1 304 -5 254 363 25 0 chr11 22427851 22427931 -128355622 + MIR SINE MIR 49 130 -132 27 62 0 0 chr11 22427931 22427979 -128355574 + AT_rich Low_complexity Low_complexity 1 48 0 214 358 161 7 chr11 22428265 22428402 -128355151 + MIR3 SINE MIR 39 196 -12 627 282 68 19 chr11 22428967 22429173 -128354380 - MIR SINE MIR -14 248 33 1703 163 0 17 chr11 22429251 22429561 -128353992 + AluSx SINE Alu 1 305 0 2177 160 13 21 chr11 22429725 22429798 -128353755 + MSTA LTR MaLR 1 73 -355 2197 149 6 8 chr11 22429798 22430154 -128353399 - THE1A LTR MaLR 0 355 1 2177 160 13 21 chr11 22430154 22430454 -128353099 + MSTA LTR MaLR 73 371 -57 1985 47 12 0 chr11 22430461 22430714 -128352839 - L1PA5 LINE L1 0 6154 5899 2382 38 10 0 chr11 22430714 22431005 -128352548 + L1PA5 LINE L1 5592 5885 -270 472 133 3 13 chr11 22431005 22431087 -128352466 + MSTA LTR MaLR 280 428 0 * 1401 219 114 37 chr11 22431087 22431508 -128352045 + MLT1D LTR MaLR 50 503 -2 243 224 17 0 chr11 22432074 22432132 -128351421 + (TATATG)n Simple_repeat Simple_repeat 2 60 0 280 259 101 44 chr11 22432544 22432702 -128350851 + L1ME LINE L1 5326 5492 -629 303 236 112 28 chr11 22432771 22432949 -128350604 + L1ME LINE L1 5641 5833 -288 22 35 0 0 chr11 22433140 22433169 -128350384 + AT_rich Low_complexity Low_complexity 1 29 0 2071 131 3 0 chr11 22433905 22434210 -128349343 - AluSx SINE Alu -5 307 2 1432 255 52 26 chr11 22436346 22436812 -128346741 - L1ME1 LINE L1 -9 6157 5680 2079 182 9 36 chr11 22437257 22437314 -128346239 + L1MB5 LINE L1 5740 5797 -377 1938 189 76 2 chr11 22437314 22437710 -128345843 + MSTB LTR MaLR 2 426 0 2079 182 9 36 chr11 22437710 22438091 -128345462 + L1MB5 LINE L1 5797 6166 -8 238 333 0 0 chr11 22438530 22438599 -128344954 + MIR SINE MIR 183 251 -11 389 301 133 12 chr11 22439740 22439913 -128343640 - MIR SINE MIR -21 241 48 387 41 0 0 chr11 22440091 22440140 -128343413 + (TG)n Simple_repeat Simple_repeat 2 50 0 3784 169 44 22 chr11 22440151 22440278 -128343275 - L1MA9 LINE L1 -5 6195 6072 348 43 0 0 chr11 22440278 22440324 -128343229 + (TG)n Simple_repeat Simple_repeat 2 47 0 3784 169 44 22 chr11 22440324 22440709 -128342844 - L1MA9 LINE L1 -128 6072 5656 306 0 0 0 chr11 22440709 22440743 -128342810 + (CA)n Simple_repeat Simple_repeat 2 35 0 3784 169 44 22 chr11 22440743 22441044 -128342509 - L1MA9 LINE L1 -544 5656 5363 512 136 123 0 chr11 22441045 22441126 -128342427 - AluSg SINE Alu -30 280 190 1020 91 0 8 chr11 22441127 22441259 -128342294 - AluSg SINE Alu -179 131 1 4585 198 31 16 chr11 22441260 22441809 -128341744 - L1MA9 LINE L1 -743 5291 4752 2658 128 9 42 chr11 22441809 22442256 -128341297 + MSTB1 LTR MaLR 1 432 0 4585 198 31 16 chr11 22442256 22442921 -128340632 - L1MA9 LINE L1 -1282 4752 4144 3549 271 31 48 chr11 22442946 22445050 -128338503 - L1MA9 LINE L1 -4289 1745 11 343 277 102 78 chr11 22445059 22445315 -128338238 + L2 LINE L2 3048 3309 -4 534 302 13 13 chr11 22445509 22445658 -128337895 - MIR SINE MIR -86 176 28 200 118 29 0 chr11 22445804 22445838 -128337715 + (TCTA)n Simple_repeat Simple_repeat 2 36 0 978 110 7 0 chr11 22446610 22446746 -128336807 - MER1B DNA MER1_type 0 339 203 425 263 39 58 chr11 22447178 22447437 -128336116 + MIR SINE MIR 13 261 -1 1442 61 11 0 chr11 22448083 22448264 -128335289 + L1PA5 LINE L1 5964 6146 -8 324 0 0 0 chr11 22448547 22448583 -128334970 + (CA)n Simple_repeat Simple_repeat 2 37 0 230 341 78 31 chr11 22448784 22448913 -128334640 + MIR SINE MIR 86 220 -42 21 0 0 0 chr11 22449112 22449133 -128334420 + AT_rich Low_complexity Low_complexity 1 21 0 4040 38 4 2 chr11 22449804 22450307 -128333246 + L1PA4 LINE L1 5652 6155 0 461 328 59 16 chr11 22450731 22450917 -128332636 - MIR SINE MIR -35 227 34 1981 303 118 38 chr11 22451605 22452291 -128331262 + L2 LINE L2 1927 2557 -756 1536 201 14 3 chr11 22452291 22452580 -128330973 - AluJo SINE Alu -20 292 1 1981 303 118 38 chr11 22452580 22453168 -128330385 + L2 LINE L2 2557 3313 0 891 225 42 50 chr11 22453567 22453812 -128329741 - MLT1A2 LTR MaLR -5 369 125 2503 154 49 5 chr11 22453812 22454222 -128329331 - MSTA LTR MaLR 0 428 1 891 225 42 50 chr11 22454222 22454238 -128329315 - MLT1A2 LTR MaLR -249 125 110 924 150 12 6 chr11 22454239 22454399 -128329154 - MSTA-int LTR MaLR -16 1635 1475 6478 184 11 18 chr11 22454407 22454545 -128329008 - MSTA-int LTR MaLR -466 1185 1047 1836 157 122 40 chr11 22454545 22454940 -128328613 - MSTA LTR MaLR 0 428 2 6478 184 11 18 chr11 22454940 22455621 -128327932 - MSTA-int LTR MaLR -604 1047 375 2235 123 0 7 chr11 22455621 22455931 -128327622 + AluSc SINE Alu 1 308 -1 6478 184 11 18 chr11 22455931 22456304 -128327249 - MSTA-int LTR MaLR -1276 375 1 2481 167 21 0 chr11 22456309 22456728 -128326825 - MSTA LTR MaLR 0 428 1 473 204 133 0 chr11 22456728 22456841 -128326712 - MLT1A2 LTR MaLR -244 130 3 305 309 65 8 chr11 22457225 22457348 -128326205 + L2 LINE L2 3182 3311 -2 249 277 0 0 chr11 22457674 22457739 -128325814 - MIR SINE MIR -18 244 180 487 345 78 35 chr11 22458728 22459163 -128324390 + L3b LINE CR1 1117 1570 -13 1337 214 108 52 chr11 22459740 22459795 -128323758 - MER63B DNA MER1_type -633 429 379 2566 58 0 3 chr11 22459795 22460103 -128323450 - AluY SINE Alu -3 308 2 1337 214 108 52 chr11 22460103 22460453 -128323100 - MER63B DNA MER1_type -683 379 1 242 278 0 31 chr11 22461863 22461960 -128321593 + GA-rich Low_complexity Low_complexity 3 96 0 236 245 0 0 chr11 22462069 22462122 -128321431 + GA-rich Low_complexity Low_complexity 2 54 0 347 319 123 54 chr11 22462132 22462539 -128321014 + L2 LINE L2 2423 2857 -457 24 0 0 0 chr11 22462879 22462903 -128320650 + AT_rich Low_complexity Low_complexity 1 24 0 340 152 76 0 chr11 22464078 22464157 -128319396 - L1PA15 LINE L1 0 6165 6081 489 152 20 10 chr11 22464242 22464341 -128319212 - MER53 DNA DNA -68 121 22 397 146 24 12 chr11 22464268 22464350 -128319203 + MER53 DNA DNA 105 187 -2 * 23 54 0 0 chr11 22464649 22464686 -128318867 + AT_rich Low_complexity Low_complexity 1 37 0 427 339 41 6 chr11 22464762 22464933 -128318620 - MIR SINE MIR -57 205 29 391 286 29 9 chr11 22465894 22465999 -128317554 - L2 LINE L2 -44 3228 3122 183 179 0 0 chr11 22466930 22466958 -128316595 + L2 LINE L2 1784 1811 -1503 2256 89 6 0 chr11 22467187 22467511 -128316042 - pTR5 LTR ERV1 -2047 391 66 269 237 41 21 chr11 22467511 22467608 -128315945 - LTR30 LTR ERV1 -80 642 544 2379 153 94 68 chr11 22467608 22468432 -128315121 - pTR5 LTR ERV1 -413 2025 743 251 366 122 17 chr11 22468435 22468730 -128314823 - L2 LINE L2 -1880 1434 1109 7074 193 28 4 chr11 22469017 22471331 -128312222 - L1PA15 LINE L1 0 6816 4441 2508 125 11 3 chr11 22471331 22471692 -128311861 - THE1B LTR MaLR 0 364 1 7074 193 28 4 chr11 22471692 22471792 -128311761 - L1PA15 LINE L1 -2375 4441 4345 4002 243 35 34 chr11 22471792 22471972 -128311581 - L1PA15 LINE L1 -3402 3395 3217 1672 91 18 0 chr11 22471972 22472192 -128311361 + AluY SINE Alu 85 308 -3 4002 243 35 34 chr11 22472192 22472629 -128310924 - L1PA15 LINE L1 -3580 3217 2782 1630 190 14 7 chr11 22472629 22472908 -128310645 + AluSx SINE Alu 1 281 -31 4002 243 35 34 chr11 22472908 22474390 -128309163 - L1PA15 LINE L1 -4015 2782 1285 314 342 25 77 chr11 22474493 22474689 -128308864 - L1PA15 LINE L1 -6073 714 529 2213 124 0 52 chr11 22474689 22475051 -128308502 - THE1C LTR MaLR -30 345 3 7117 141 13 5 chr11 22475051 22476139 -128307414 - THE1C-int LTR MaLR -1 1579 483 294 95 0 0 chr11 22476139 22476181 -128307372 + (T)n Simple_repeat Simple_repeat 1 42 0 180 0 0 0 chr11 22476323 22476343 -128307210 + (T)n Simple_repeat Simple_repeat 1 20 0 466 304 69 16 chr11 22476556 22476803 -128306750 + L1ME LINE L1 5555 5814 -307 2193 116 10 7 chr11 22477178 22477481 -128306072 + AluSx SINE Alu 1 304 -8 1140 286 61 23 chr11 22477823 22478165 -128305388 + L1M4b LINE L1 96 450 -6409 1057 272 47 3 chr11 22478166 22478504 -128305049 + L1M4b LINE L1 1036 1388 -5471 1061 297 72 41 chr11 22478508 22479032 -128304521 + L1M4b LINE L1 1434 1995 -4964 1417 208 7 44 chr11 22479032 22479330 -128304223 + AluJo SINE Alu 1 287 -25 1061 297 72 41 chr11 22479330 22479653 -128303900 + L1M4b LINE L1 1995 2307 -4652 1487 105 0 0 chr11 22479654 22479845 -128303708 + AluSg SINE Alu 1 191 -119 538 90 0 56 chr11 22479845 22479934 -128303619 + AluSg SINE Alu 224 307 -3 189 0 0 0 chr11 22480070 22480091 -128303462 + (A)n Simple_repeat Simple_repeat 1 21 0 395 270 56 107 chr11 22480096 22480366 -128303187 + L1M4b LINE L1 2445 2700 -4438 39 0 0 0 chr11 22480510 22480549 -128303004 + AT_rich Low_complexity Low_complexity 1 39 0 344 308 55 9 chr11 22480622 22480947 -128302606 + L1M4b LINE L1 2655 2994 -3965 636 288 48 46 chr11 22480948 22481494 -128302059 + L1M4b LINE L1 3782 4328 -2629 3250 230 69 8 chr11 22481516 22482504 -128301049 + L1M4b LINE L1 4511 5558 -1399 243 318 24 12 chr11 22482718 22482803 -128300750 - LTR67 LTR ERVL -470 87 2 52 41 0 0 chr11 22482953 22483026 -128300527 + AT_rich Low_complexity Low_complexity 1 73 0 21 0 0 0 chr11 22483137 22483158 -128300395 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr11 22483948 22483970 -128299583 + AT_rich Low_complexity Low_complexity 1 22 0 260 196 0 0 chr11 22484009 22484060 -128299493 - L2 LINE L2 0 3313 3263 198 0 0 0 chr11 22484149 22484171 -128299382 + (TG)n Simple_repeat Simple_repeat 2 23 0 579 108 0 0 chr11 22484202 22484295 -128299258 + (CA)n Simple_repeat Simple_repeat 1 93 0 765 328 64 25 chr11 22484461 22485131 -128298422 + L1M4 LINE L1 2123 2818 -3328 367 281 59 15 chr11 22485390 22485525 -128298028 + MER93a LTR ERV1 259 399 -3 2360 61 0 0 chr11 22487841 22488166 -128295387 + AluY SINE Alu 1 325 0 265 271 110 45 chr11 22488369 22488524 -128295029 + MER57-int LTR ERV1 419 583 -4064 1042 303 30 81 chr11 22489586 22490928 -128292625 + MER57-int LTR ERV1 2093 6132 -1405 270 275 64 18 chr11 22492197 22492306 -128291247 + MER57-int LTR ERV1 7246 7359 -360 290 270 31 31 chr11 22492400 22492572 -128290981 + MER57-int LTR ERV1 6586 6667 -134 309 242 74 0 chr11 22492679 22492774 -128290779 + MER57-int LTR ERV1 7060 7161 -376 698 250 0 13 chr11 22492842 22492994 -128290559 + AluJo SINE Alu 6 155 -157 233 219 0 31 chr11 22492996 22493060 -128290493 - FRAM SINE Alu -65 101 40 577 205 0 0 chr11 22493069 22493181 -128290372 + FRAM SINE Alu 58 169 -7 652 278 45 38 chr11 22493258 22493317 -128290236 + MER93a LTR ERV1 131 188 -214 1497 208 100 8 chr11 22493317 22493678 -128289875 + MSTD LTR MaLR 1 394 -2 652 278 45 38 chr11 22493678 22493884 -128289669 + MER93a LTR ERV1 188 398 -4 438 313 85 41 chr11 22493885 22494249 -128289304 + L1M4 LINE L1 2813 3192 -2954 473 306 83 33 chr11 22494478 22494876 -128288677 + L1M4 LINE L1 3544 3961 -2185 588 288 27 27 chr11 22494889 22495073 -128288480 - L2 LINE L2 -519 2795 2612 387 0 0 0 chr11 22495893 22495936 -128287617 + (CA)n Simple_repeat Simple_repeat 1 43 0 192 362 43 36 chr11 22496210 22496348 -128287205 + L2 LINE L2 2916 3054 -218 579 185 193 0 chr11 22496385 22496504 -128287049 - AluSq/x SINE Alu -171 142 1 1387 212 37 76 chr11 22496505 22496887 -128286666 - MSTD LTR MaLR -29 367 1 599 239 0 15 chr11 22496887 22497019 -128286534 + MLT1C LTR MaLR 338 467 0 1835 153 0 7 chr11 22497607 22497895 -128285658 - AluSx SINE Alu -26 286 1 268 279 9 18 chr11 22497931 22498042 -128285511 + HAL1 LINE L1 1531 1640 -867 251 243 48 48 chr11 22498498 22498601 -128284952 + HAL1 LINE L1 2405 2507 0 222 190 17 17 chr11 22498807 22498865 -128284688 + A-rich Low_complexity Low_complexity 3 60 0 721 271 124 56 chr11 22499221 22499512 -128284041 + L1M4 LINE L1 2740 3010 -3136 2305 53 0 3 chr11 22499512 22499821 -128283732 + AluY SINE Alu 2 309 0 721 271 124 56 chr11 22499821 22500060 -128283493 + L1M4 LINE L1 3010 3307 -2839 22 56 0 0 chr11 22500312 22500348 -128283205 + AT_rich Low_complexity Low_complexity 1 36 0 216 97 0 0 chr11 22500401 22500432 -128283121 + (TCCA)n Simple_repeat Simple_repeat 1 31 0 237 247 14 7 chr11 22500633 22500743 -128282810 + (TA)n Simple_repeat Simple_repeat 1 114 -33 894 248 126 16 chr11 22500743 22501053 -128282500 + MER2 DNA MER2_type 1 344 0 237 247 14 7 chr11 22501053 22501088 -128282465 + (TA)n Simple_repeat Simple_repeat 114 147 0 207 282 107 93 chr11 22501710 22501926 -128281627 + L2 LINE L2 3028 3246 -26 271 0 0 0 chr11 22502352 22502391 -128281162 + AluY SINE Alu 263 301 0 212 0 36 0 chr11 22502546 22502574 -128280979 + (TA)n Simple_repeat Simple_repeat 2 30 0 2234 234 80 11 chr11 22503193 22503805 -128279748 - MLT1E1 LTR MaLR 0 654 1 183 267 0 0 chr11 22503857 22503932 -128279621 + (TATATG)n Simple_repeat Simple_repeat 4 78 0 241 296 62 0 chr11 22504554 22504635 -128278918 - MIR SINE MIR -114 148 63 339 319 115 0 chr11 22505041 22505223 -128278330 - MIR SINE MIR -8 254 52 365 342 65 16 chr11 22506247 22506431 -128277122 + MIR SINE MIR 14 206 -56 6083 181 40 9 chr11 22506480 22507927 -128275626 - L1MA5 LINE L1 0 6300 4774 2108 125 0 0 chr11 22507927 22508222 -128275331 - AluSx SINE Alu -17 295 1 6083 181 40 9 chr11 22508222 22509008 -128274545 - L1MA5 LINE L1 -1526 4774 4013 273 277 108 0 chr11 22510611 22510694 -128272859 - MIR SINE MIR -4 258 167 229 328 30 38 chr11 22511206 22511337 -128272216 + LTR16C LTR ERVL 362 491 0 1167 243 55 17 chr11 22511604 22511981 -128271572 - L1ME2 LINE L1 -44 6120 5735 398 175 58 19 chr11 22512234 22512337 -128271216 - MER103 DNA DNA -59 107 1 204 196 0 39 chr11 22512387 22512438 -128271115 + (TCTA)n Simple_repeat Simple_repeat 1 49 0 21 57 0 0 chr11 22512758 22512793 -128270760 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr11 22516467 22516490 -128267063 + AT_rich Low_complexity Low_complexity 1 23 0 1801 200 103 77 chr11 22517114 22517813 -128265740 - MER50 LTR ERV1 -8 726 10 311 306 83 32 chr11 22517813 22517970 -128265583 + MIR SINE MIR 85 249 -13 414 281 74 0 chr11 22518787 22518908 -128264645 - MIR SINE MIR -49 213 84 598 196 105 0 chr11 22519125 22519172 -128264381 + AluJo SINE Alu 72 113 -199 195 42 0 0 chr11 22519172 22519196 -128264357 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 598 196 105 0 chr11 22519196 22519281 -128264272 + AluJo SINE Alu 113 218 -94 386 225 11 11 chr11 22519312 22519421 -128264132 + AluJ/FRAM SINE Alu 232 296 -6 22 0 0 0 chr11 22519429 22519451 -128264102 + AT_rich Low_complexity Low_complexity 1 22 0 24 53 0 0 chr11 22519474 22519512 -128264041 + AT_rich Low_complexity Low_complexity 1 38 0 567 195 26 32 chr11 22519571 22519725 -128263828 - L1MA8 LINE L1 -10 6281 6129 13917 174 54 22 chr11 22519745 22521949 -128261604 - L1MA2 LINE L1 0 7723 5591 2042 133 0 3 chr11 22521949 22522242 -128261311 + AluSg SINE Alu 4 295 -15 13917 174 54 22 chr11 22522242 22523776 -128259777 - L1MA2 LINE L1 -2132 5591 4108 2007 144 133 13 chr11 22523776 22524158 -128259395 + MSTA LTR MaLR 1 428 0 13917 174 54 22 chr11 22524158 22525641 -128257912 - L1MA2 LINE L1 -3615 4108 2325 17574 64 12 7 chr11 22525642 22528846 -128254707 - L1PA6 LINE L1 0 6154 2973 4346 220 38 14 chr11 22528847 22529836 -128253717 - L1MA2 LINE L1 -6534 1031 19 11449 208 39 18 chr11 22529842 22533435 -128250118 - L1MA8 LINE L1 -156 6135 2459 483 321 30 18 chr11 22533435 22533603 -128249950 + L2 LINE L2 2754 2923 -391 242 89 44 0 chr11 22535428 22535473 -128248080 - L1PA4 LINE L1 -2 6153 6107 181 342 145 46 chr11 22536181 22536333 -128247220 - L3 LINE CR1 -882 695 529 236 30 30 0 chr11 22536812 22536845 -128246708 + (TTG)n Simple_repeat Simple_repeat 3 36 0 1980 136 58 3 chr11 22537381 22537711 -128245842 + MER7A DNA MER2_type 1 346 0 2273 111 23 9 chr11 22537799 22538149 -128245404 - THE1A LTR MaLR 0 355 1 11079 109 4 6 chr11 22538149 22539732 -128243821 - THE1A-int LTR MaLR 0 1580 1 359 125 0 0 chr11 22539732 22539780 -128243773 - THE1A LTR MaLR 0 355 308 1428 161 47 29 chr11 22539918 22540197 -128243356 + AluJb SINE Alu 27 310 -2 1821 165 64 14 chr11 22541387 22541744 -128241809 - THE1C LTR MaLR 0 375 1 264 326 153 7 chr11 22541848 22541992 -128241561 + MLT1K LTR MaLR 12 176 -412 2038 241 64 2 chr11 22542016 22542551 -128241002 - L1MB7 LINE L1 -25 6159 5592 983 269 36 34 chr11 22542555 22542912 -128240641 - L1M4 LINE L1 -6183 359 2 669 297 113 19 chr11 22543190 22543456 -128240097 + LTR16C LTR ERVL 198 488 -3 275 263 0 32 chr11 22543616 22543711 -128239842 + MLT1K LTR MaLR 495 586 -2 319 21 42 0 chr11 22543734 22543782 -128239771 + (CAAA)n Simple_repeat Simple_repeat 4 53 0 279 274 45 78 chr11 22543841 22544020 -128239533 - MER110A LTR ERV1 -45 423 251 32 0 0 0 chr11 22544388 22544420 -128239133 + AT_rich Low_complexity Low_complexity 1 32 0 350 318 151 0 chr11 22545041 22545167 -128238386 + MIR SINE MIR 48 192 -70 796 210 90 57 chr11 22545180 22545667 -128237886 + LTR18A LTR ERVL 1 608 -6 1334 177 12 10 chr11 22545674 22545939 -128237614 + HERVL18 LTR ERVL 8 304 -5743 878 223 178 5 chr11 22545924 22546121 -128237432 + HERVL18 LTR ERVL 463 693 -5354 * 2978 156 4 2 chr11 22546121 22546590 -128236963 + HERVL18 LTR ERVL 1324 1793 -4254 2503 47 0 0 chr11 22546610 22546907 -128236646 - AluY SINE Alu -11 300 4 6331 151 7 12 chr11 22546934 22548346 -128235207 + HERVL18 LTR ERVL 2119 3579 -2468 1603 136 8 4 chr11 22548348 22548591 -128234962 + HERVL18 LTR ERVL 4394 4637 -1410 744 230 5 108 chr11 22548651 22548855 -128234698 + LTR18A LTR ERVL 1 183 -174 579 242 95 28 chr11 22548925 22549136 -128234417 + LTR18B LTR ERVL 383 607 -7 209 255 0 0 chr11 22550100 22550147 -128233406 - L2 LINE L2 0 3313 3267 475 320 48 35 chr11 22550176 22550404 -128233149 - MIR SINE MIR -30 232 2 4952 157 35 4 chr11 22550818 22552060 -128231493 - L1PA15 LINE L1 -2 6163 4897 180 0 0 0 chr11 22552772 22552792 -128230761 + (T)n Simple_repeat Simple_repeat 1 20 0 405 0 0 0 chr11 22553291 22553336 -128230217 + (CA)n Simple_repeat Simple_repeat 1 45 0 193 362 43 36 chr11 22553611 22553749 -128229804 + L2 LINE L2 2916 3054 -218 257 247 143 0 chr11 22553894 22553971 -128229582 - L2 LINE L2 -1 3312 3225 212 367 130 5 chr11 22553968 22554183 -128229370 - L2 LINE L2 -229 3084 2843 * 2136 27 0 15 chr11 22554542 22554803 -128228750 + L1PA4 LINE L1 5895 6151 -4 349 198 165 0 chr11 22554820 22554911 -128228642 + L1PB4 LINE L1 6051 6156 0 1053 30 0 8 chr11 22555819 22555952 -128227601 - L1PA5 LINE L1 0 6154 6023 256 280 27 0 chr11 22556823 22556898 -128226655 - MIR SINE MIR -115 147 71 2020 119 0 14 chr11 22556948 22557275 -128226278 + AluSc SINE Alu 1 323 0 970 265 136 10 chr11 22557364 22557893 -128225660 - MER69 DNA AcHobo -2 2524 1920 * 1408 275 39 32 chr11 22557888 22558321 -128225232 - MER69 DNA AcHobo -790 436 1 2280 236 67 21 chr11 22558870 22559494 -128224059 + MLT1E1 LTR MaLR 1 653 -1 1386 203 56 53 chr11 22559812 22559880 -128223673 + MLT2C1 LTR ERVL 1 67 -330 2042 124 59 31 chr11 22559880 22560234 -128223319 + THE1B LTR MaLR 1 364 0 1386 203 56 53 chr11 22560234 22560559 -128222994 + MLT2C1 LTR ERVL 67 395 -2 2380 120 11 0 chr11 22561649 22561998 -128221555 - THE1A LTR MaLR -2 353 1 292 134 16 47 chr11 22562129 22562256 -128221297 + (TA)n Simple_repeat Simple_repeat 2 124 0 1309 257 64 27 chr11 22562293 22562698 -128220855 - MLT1C LTR MaLR -47 420 1 6716 65 0 77 chr11 22563443 22564553 -128219000 - L1PA7 LINE L1 -1 6153 5070 14520 87 6 1 chr11 22564553 22566577 -128216976 + L1P LINE L1 2348 4381 -1765 2159 172 28 42 chr11 22566582 22567013 -128216540 - LTR3 LTR ERVK -3 429 5 4686 98 4 1 chr11 22567014 22567701 -128215852 + L1P LINE L1 4373 5061 -1085 275 275 13 64 chr11 22567779 22567935 -128215618 + MER61E LTR ERV1 98 234 -379 1089 183 20 0 chr11 22567955 22568152 -128215401 + MER61E LTR ERV1 341 541 -28 599 276 67 33 chr11 22568483 22568962 -128214591 + L1ME LINE L1 519 1013 -5057 1266 248 66 28 chr11 22569003 22569180 -128214373 - L1MC4 LINE L1 -321 7563 7394 1503 191 7 36 chr11 22569180 22569483 -128214070 - AluJb SINE Alu -12 300 7 1266 248 66 28 chr11 22569483 22569843 -128213710 - L1MC4 LINE L1 -490 7394 6882 2500 205 58 51 chr11 22569843 22570532 -128213021 - LTR8A LTR ERV1 0 727 34 2968 266 103 61 chr11 22570560 22572937 -128210616 - L1MC4a LINE L1 -743 5403 4406 227 224 0 0 chr11 22572982 22573040 -128210513 - L1 LINE L1 -1820 4326 4269 2261 94 0 10 chr11 22573925 22574232 -128209321 + AluY SINE Alu 1 304 -7 370 311 82 22 chr11 22574676 22574859 -128208694 + MIR SINE MIR 20 213 -49 323 311 98 52 chr11 22575462 22575655 -128207898 - MIR SINE MIR -58 204 3 3068 176 57 2 chr11 22577720 22578323 -128205230 - L1MD3 LINE L1 0 8413 6121 778 215 107 8 chr11 22578331 22578592 -128204961 - L1MD3 LINE L1 -1511 5053 4767 719 206 0 15 chr11 22578592 22578728 -128204825 + AluJo SINE Alu 1 134 -178 1868 244 70 20 chr11 22578736 22579282 -128204271 - L1MD3 LINE L1 -1787 4777 4193 1180 179 179 0 chr11 22579282 22579567 -128203986 - MER44D DNA MER2_type 0 609 4 1868 244 70 20 chr11 22579567 22579659 -128203894 - L1MD3 LINE L1 -2371 4193 4107 1744 221 104 10 chr11 22579653 22579952 -128203601 - L1MD3 LINE L1 -4598 1966 1697 * 186 103 0 0 chr11 22579952 22579981 -128203572 + (TG)n Simple_repeat Simple_repeat 2 30 0 1744 221 104 10 chr11 22579981 22580319 -128203234 - L1MD3 LINE L1 -4867 1697 1182 537 135 0 0 chr11 22580320 22580409 -128203144 + (TTCCC)n Simple_repeat Simple_repeat 4 92 0 2095 261 73 67 chr11 22581016 22581533 -128202020 + L1MEc LINE L1 252 765 -5450 2197 64 7 40 chr11 22581533 22581830 -128201723 + AluY SINE Alu 21 307 -4 2095 261 73 67 chr11 22581830 22582020 -128201533 + L1MEc LINE L1 765 952 -5263 2187 116 0 3 chr11 22582020 22582321 -128201232 + AluSx SINE Alu 1 300 -12 2095 261 73 67 chr11 22582321 22582774 -128200779 + L1MEc LINE L1 952 1371 -4844 933 314 19 14 chr11 22583259 22583625 -128199928 - L1MD3 LINE L1 -5674 371 4 23 0 0 0 chr11 22583751 22583774 -128199779 + AT_rich Low_complexity Low_complexity 1 23 0 1504 167 8 15 chr11 22583782 22584046 -128199507 - AluJo SINE Alu -23 289 28 2403 100 0 3 chr11 22584610 22584920 -128198633 - AluSc SINE Alu 0 309 1 200 273 0 0 chr11 22584987 22585031 -128198522 - MIR SINE MIR -108 154 111 3043 240 71 5 chr11 22586833 22587996 -128195557 - L1ME LINE L1 -689 5477 4247 866 203 69 61 chr11 22588239 22588614 -128194939 + MER65A-int LTR ERV1 2058 4083 -2593 2055 119 3 17 chr11 22588624 22588926 -128194627 - AluSx SINE Alu -14 298 1 631 180 21 72 chr11 22589211 22589405 -128194148 + MER65A-int LTR ERV1 3547 3730 -2868 1270 207 71 67 chr11 22589484 22589645 -128193908 + MER65A-int LTR ERV1 2471 2630 -2306 1984 94 0 0 chr11 22589645 22589890 -128193663 + AluSg SINE Alu 38 282 -28 605 131 0 0 chr11 22589806 22589892 -128193661 + AluSg/x SINE Alu 201 315 0 * 187 103 0 0 chr11 22589892 22589921 -128193632 + (CAA)n Simple_repeat Simple_repeat 2 180 0 1270 207 71 67 chr11 22589921 22589959 -128193594 + MER65A-int LTR ERV1 2630 2666 -2270 1497 180 20 36 chr11 22589959 22590265 -128193288 - AluJo SINE Alu -11 301 1 1270 207 71 67 chr11 22590265 22591381 -128192172 + MER65A-int LTR ERV1 2666 3631 -1305 1119 118 0 0 chr11 22591381 22591542 -128192011 - MLT2A2 LTR ERVL 0 453 293 390 240 50 0 chr11 22591547 22591647 -128191906 + MER65A-int LTR ERV1 4927 5031 -1300 1523 247 89 29 chr11 22591924 22592405 -128191148 + MER65A-int LTR ERV1 3606 4115 -756 1636 241 62 4 chr11 22592416 22592992 -128190561 + MER65A-int LTR ERV1 4237 4869 -2 2474 147 2 67 chr11 22592993 22593469 -128190084 + MER65A LTR ERV1 1 445 0 222 324 144 18 chr11 22593506 22593617 -128189936 + L2 LINE L2 3143 3267 -5 23 0 0 0 chr11 22593691 22593714 -128189839 + AT_rich Low_complexity Low_complexity 1 23 0 1899 115 21 17 chr11 22593901 22594188 -128189365 - AluSc SINE Alu -21 288 1 288 271 332 4 chr11 22594219 22594459 -128189094 - L2 LINE L2 -290 3023 2716 339 378 16 0 chr11 22594657 22594784 -128188769 - L2 LINE L2 -243 3070 2942 576 325 38 13 chr11 22594888 22595125 -128188428 + MIR SINE MIR 9 251 -11 2281 79 0 57 chr11 22595366 22595683 -128187870 - AluY SINE Alu -12 299 1 1230 128 20 0 chr11 22596077 22596281 -128187272 - LTR54 LTR ERV1 -4 506 299 476 130 0 0 chr11 22596286 22596355 -128187198 - LTR54 LTR ERV1 -441 69 1 580 301 83 98 chr11 22597404 22597935 -128185618 - MLT1K LTR MaLR -32 556 34 180 0 0 0 chr11 22598459 22598479 -128185074 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 225 329 134 32 chr11 22599063 22599279 -128184274 - MIR SINE MIR -8 254 17 541 293 37 18 chr11 22599424 22599611 -128183942 - MIR SINE MIR -8 254 64 962 105 0 19 chr11 22599745 22599956 -128183597 + (TA)n Simple_repeat Simple_repeat 1 206 0 2493 295 74 34 chr11 22599986 22600724 -128182829 + L1MEc LINE L1 84 791 -5426 1654 199 27 3 chr11 22600724 22601016 -128182537 + AluJo SINE Alu 1 299 -13 2493 295 74 34 chr11 22601016 22601798 -128181755 + L1MEc LINE L1 791 1518 -4699 434 286 60 0 chr11 22601804 22601937 -128181616 - L2 LINE L2 -963 2351 2211 398 356 109 21 chr11 22601987 22602318 -128181235 - L2 LINE L2 -561 2753 2394 255 374 9 0 chr11 22602456 22602563 -128180990 - L2 LINE L2 -957 2357 2250 764 296 38 12 chr11 22602911 22603151 -128180402 - MIR SINE MIR 0 262 17 402 265 32 26 chr11 22604078 22604267 -128179286 - L1M4 LINE L1 -3774 2372 2183 182 289 206 0 chr11 22605271 22605368 -128178185 - MIR SINE MIR -7 255 139 28 0 0 0 chr11 22605368 22605396 -128178157 + AT_rich Low_complexity Low_complexity 1 28 0 201 396 30 0 chr11 22605627 22605728 -128177825 + L2 LINE L2 3192 3295 -18 297 0 0 0 chr11 22605806 22605839 -128177714 + (CA)n Simple_repeat Simple_repeat 2 34 0 183 80 0 0 chr11 22607383 22607408 -128176145 + (A)n Simple_repeat Simple_repeat 1 25 0 360 148 0 0 chr11 22607539 22607600 -128175953 + (CA)n Simple_repeat Simple_repeat 2 62 0 484 200 100 0 chr11 22609076 22609196 -128174357 - L1MA8 LINE L1 -163 7088 6957 * 2675 169 49 1 chr11 22609190 22609958 -128173595 - L1MA8 LINE L1 -646 6605 5801 * 4701 170 30 5 chr11 22609956 22610911 -128172642 + L1PB4 LINE L1 5175 6151 -5 4824 233 187 6 chr11 22610919 22611929 -128171624 - L1MA8 LINE L1 -1286 5820 4488 1990 156 119 8 chr11 22611929 22612314 -128171239 + MSTA LTR MaLR 1 428 0 4824 233 187 6 chr11 22612314 22612692 -128170861 - L1MA8 LINE L1 -2618 4488 4180 * 14122 216 23 10 chr11 22612678 22615922 -128167631 - L1P LINE L1 -913 5233 1949 3506 254 91 47 chr11 22615922 22617152 -128166401 - L1PA12 LINE L1 -6151 1430 6 320 77 5 0 chr11 22617152 22617199 -128166354 + MSTA LTR MaLR 378 428 0 4864 200 28 2 chr11 22617199 22618156 -128165397 + MSTA-int LTR MaLR 1 982 -669 1591 143 24 0 chr11 22618156 22618408 -128165145 - MLT2A2 LTR ERVL -193 260 3 1168 278 32 39 chr11 22618411 22619339 -128164214 - L1MA8 LINE L1 -4694 2343 222 347 361 30 20 chr11 22619752 22619954 -128163599 + MIR SINE MIR 49 252 -10 41 36 0 0 chr11 22619996 22620051 -128163502 + AT_rich Low_complexity Low_complexity 1 55 0 268 296 105 26 chr11 22620074 22620226 -128163327 - L2 LINE L2 -2 3311 3148 314 323 89 13 chr11 22620861 22621019 -128162534 - MIR3 SINE MIR -3 205 36 689 269 83 9 chr11 22621417 22621633 -128161920 + L1ME3 LINE L1 4857 5088 -1058 1305 153 13 18 chr11 22621642 22622095 -128161458 - LTR54 LTR ERV1 0 510 1 1764 239 82 45 chr11 22622096 22622975 -128160578 + L1ME3 LINE L1 5102 6013 -149 281 226 152 79 chr11 22623025 22623189 -128160364 + L1ME3 LINE L1 5931 6106 -56 212 83 0 28 chr11 22623360 22623396 -128160157 + (TCTCCC)n Simple_repeat Simple_repeat 3 37 0 287 220 0 0 chr11 22623546 22623596 -128159957 + MER94 DNA DNA 2 51 -83 222 62 0 0 chr11 22623609 22623641 -128159912 + (TC)n Simple_repeat Simple_repeat 2 33 0 87 73 0 0 chr11 22623657 22623835 -128159718 + AT_rich Low_complexity Low_complexity 1 178 0 1956 139 0 27 chr11 22623926 22624220 -128159333 + AluSx SINE Alu 2 287 -25 1107 251 63 20 chr11 22624491 22624980 -128158573 + MER114 LTR ERV 1 510 -138 21 71 0 0 chr11 22625484 22625526 -128158027 + AT_rich Low_complexity Low_complexity 1 42 0 11533 214 29 37 chr11 22626887 22627565 -128155988 + L1P3 LINE L1 1 683 -5778 189 0 0 0 chr11 22627565 22627586 -128155967 + (CACAG)n Simple_repeat Simple_repeat 1 21 0 11533 214 29 37 chr11 22627586 22630652 -128152901 + L1P3 LINE L1 683 3746 -2715 962 329 89 36 chr11 22630881 22631547 -128152006 - L2 LINE L2 -339 2975 2275 282 260 115 77 chr11 22633406 22633614 -128149939 + MLT1L LTR MaLR 169 384 -231 2001 140 33 0 chr11 22633760 22634060 -128149493 - AluSg SINE Alu 0 310 1 2723 20 0 0 chr11 22634081 22634385 -128149168 - AluYa5 SINE Alu -7 304 1 5496 204 57 112 chr11 22635651 22636781 -128146772 + L1M1 LINE L1 597 1565 -6000 * 6458 36 1 0 chr11 22635998 22636781 -128146772 - L1PA4 LINE L1 -977 5169 4386 7492 33 0 1 chr11 22636781 22637797 -128145756 + L1PA4 LINE L1 5138 6152 -3 5496 204 57 112 chr11 22637797 22638715 -128144838 + L1M1 LINE L1 1565 2532 -5033 186 71 0 0 chr11 22638715 22638743 -128144810 + (TA)n Simple_repeat Simple_repeat 2 29 0 303 49 0 0 chr11 22638748 22638789 -128144764 + (GA)n Simple_repeat Simple_repeat 1 41 0 324 0 0 0 chr11 22639448 22639484 -128144069 + (TA)n Simple_repeat Simple_repeat 1 36 0 6532 186 34 74 chr11 22639505 22642104 -128141449 + L1M1 LINE L1 2531 5232 -2333 663 127 25 68 chr11 22642104 22642222 -128141331 + AluJb SINE Alu 4 116 -196 221 0 0 33 chr11 22642223 22642253 -128141300 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 6532 186 34 74 chr11 22642253 22643060 -128140493 + L1M1 LINE L1 5231 5837 -1728 4012 115 37 5 chr11 22643060 22643704 -128139849 + L1MA3 LINE L1 5633 6297 -8 230 329 82 44 chr11 22644076 22644234 -128139319 - MER5B DNA MER1_type -14 164 1 308 298 93 13 chr11 22644235 22644386 -128139167 - L2 LINE L2 -546 2768 2606 285 313 44 6 chr11 22644424 22644606 -128138947 - L2 LINE L2 -411 2903 2715 198 0 0 0 chr11 22644830 22644852 -128138701 + (TA)n Simple_repeat Simple_repeat 2 23 0 395 208 0 0 chr11 22645312 22645418 -128138135 + (TA)n Simple_repeat Simple_repeat 2 107 0 241 196 22 43 chr11 22645428 22645520 -128138033 + L1MC4 LINE L1 6614 6703 -1339 258 353 140 7 chr11 22645914 22646064 -128137489 + MIR SINE MIR 87 256 -6 483 296 24 18 chr11 22646147 22646316 -128137237 - MER117 DNA MER1_type -27 170 1 1726 214 100 21 chr11 22646555 22647023 -128136530 + MLT1D LTR MaLR 1 505 0 376 274 164 20 chr11 22647220 22647366 -128136187 + MIR SINE MIR 81 247 -15 1503 207 10 20 chr11 22648592 22648887 -128134666 - AluJo SINE Alu -20 292 1 189 121 0 0 chr11 22649820 22649853 -128133700 + (TTG)n Simple_repeat Simple_repeat 1 33 0 221 221 9 35 chr11 22649877 22649990 -128133563 + CT-rich Low_complexity Low_complexity 2 111 0 2342 82 0 0 chr11 22650206 22650498 -128133055 - AluSq SINE Alu -11 302 11 780 266 40 13 chr11 22650686 22650741 -128132812 + MIR SINE MIR 27 79 -183 186 103 0 0 chr11 22650741 22650770 -128132783 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 780 266 40 13 chr11 22650770 22650940 -128132613 + MIR SINE MIR 79 258 -4 192 40 0 0 chr11 22652282 22652307 -128131246 + (CA)n Simple_repeat Simple_repeat 2 26 0 243 254 0 45 chr11 22652662 22652729 -128130824 - MER103 DNA DNA -41 125 62 180 250 58 0 chr11 22653816 22653868 -128129685 - MIR3 SINE MIR 0 208 154 206 158 53 21 chr11 22654096 22654191 -128129362 + GA-rich Low_complexity Low_complexity 2 99 0 208 229 21 0 chr11 22654222 22654270 -128129283 + L2 LINE L2 3263 3311 -2 244 243 56 84 chr11 22654328 22654379 -128129174 + MIR SINE MIR 159 210 -52 183 80 0 0 chr11 22654379 22654404 -128129149 + (TATATG)n Simple_repeat Simple_repeat 2 26 0 244 243 56 84 chr11 22654404 22654459 -128129094 + MIR SINE MIR 210 262 0 313 246 45 0 chr11 22654508 22654592 -128128961 - MIR SINE MIR -37 171 100 420 325 65 7 chr11 22656879 22657033 -128126520 + MER5B DNA MER1_type 10 172 -6 665 284 19 16 chr11 22657089 22657314 -128126239 + MIR SINE MIR 41 262 0 201 294 184 9 chr11 22657411 22657520 -128126033 + MIR SINE MIR 16 143 -65 338 235 51 20 chr11 22657527 22657625 -128125928 + MER58 DNA MER1_type 12 112 -103 307 225 84 0 chr11 22657617 22657688 -128125865 + MER58 DNA MER1_type 2343 2419 -1 * 478 289 169 0 chr11 22657701 22657843 -128125710 - MER5A DNA MER1_type -6 183 18 315 283 9 26 chr11 22657872 22657985 -128125568 - MER5B DNA MER1_type -67 111 1 1639 165 47 7 chr11 22658050 22658347 -128125206 + AluJb SINE Alu 1 309 -3 2168 133 0 0 chr11 22659879 22660188 -128123365 + AluSx SINE Alu 1 309 -3 666 264 6 24 chr11 22661040 22661207 -128122346 + MIR SINE MIR 99 262 0 260 300 0 67 chr11 22661352 22661442 -128122111 - MIR SINE MIR -159 103 20 194 380 39 68 chr11 22662684 22662767 -128120786 + L2 LINE L2 2927 3011 -261 1881 154 65 11 chr11 22662767 22663123 -128120430 - THE1C LTR MaLR 0 375 1 194 380 39 68 chr11 22663123 22663394 -128120159 + L2 LINE L2 3011 3271 -1 206 344 0 0 chr11 22663394 22663458 -128120095 + GA-rich Low_complexity Low_complexity 1 64 0 21 0 0 0 chr11 22664641 22664662 -128118891 + AT_rich Low_complexity Low_complexity 1 21 0 532 236 14 14 chr11 22665013 22665153 -128118400 + MIR SINE MIR 123 262 0 882 335 55 19 chr11 22665451 22665830 -128117723 - L2 LINE L2 0 3313 2921 597 78 20 20 chr11 22667173 22667275 -128116278 + (TTCC)n Simple_repeat Simple_repeat 3 104 0 330 334 210 29 chr11 22667497 22667886 -128115667 - L2 LINE L2 -265 3048 2592 354 61 0 0 chr11 22668575 22668624 -128114929 + (CA)n Simple_repeat Simple_repeat 2 50 0 274 276 31 55 chr11 22668776 22668903 -128114650 - MER103 DNA DNA -25 141 18 1794 131 63 0 chr11 22669041 22669309 -128114244 - AluSx SINE Alu -27 285 1 411 306 64 13 chr11 22669334 22669491 -128114062 + MLT1I LTR MaLR 1 165 -244 271 253 30 63 chr11 22670025 22670138 -128113415 + MIR SINE MIR 40 153 -62 201 328 139 6 chr11 22670455 22670635 -128112918 + L2 LINE L2 1154 1357 -1957 308 296 37 58 chr11 22670716 22670905 -128112648 - L2 LINE L2 -9 3304 3120 203 318 164 0 chr11 22670937 22671047 -128112506 - L2 LINE L2 -167 3146 3019 836 286 35 12 chr11 22671049 22671304 -128112249 + MLT1J LTR MaLR 1 261 -250 1824 294 83 37 chr11 22671324 22672237 -128111316 - L2 LINE L2 -552 2762 1808 320 313 73 10 chr11 22672496 22672592 -128110961 + L2 LINE L2 3205 3306 -7 264 311 104 54 chr11 22672782 22673023 -128110530 + L2 LINE L2 2804 3056 -216 2577 134 3 0 chr11 22674191 22674565 -128108988 + THE1C LTR MaLR 1 375 0 2188 123 171 104 chr11 22674569 22675090 -128108463 + THE1C-int LTR MaLR 5 560 -1091 * 2750 140 4 24 chr11 22675088 22675551 -128108002 + THE1C-int LTR MaLR 1127 1580 0 2367 141 8 11 chr11 22675551 22675927 -128107626 + THE1C LTR MaLR 1 375 0 261 194 68 48 chr11 22676120 22676223 -128107330 + HAL1b LINE L1 767 871 -477 398 261 40 40 chr11 22676617 22676843 -128106710 + L1M4 LINE L1 2147 2372 -3774 393 302 49 35 chr11 22677057 22677342 -128106211 + L1MC4 LINE L1 6814 7102 -940 319 287 14 76 chr11 22678031 22678254 -128105299 + L1MC5 LINE L1 7704 7912 -49 595 285 111 0 chr11 22679328 22679535 -128104018 - MIR SINE MIR -1 261 32 182 211 0 0 chr11 22679537 22679575 -128103978 - MIR SINE MIR -21 241 204 387 234 7 99 chr11 22679582 22679723 -128103830 - L1M4b LINE L1 -5527 1332 1205 486 0 0 0 chr11 22679860 22679914 -128103639 + (TG)n Simple_repeat Simple_repeat 1 54 0 1810 274 133 61 chr11 22680300 22681164 -128102389 - L1M4b LINE L1 -5923 936 11 301 274 89 37 chr11 22681494 22681629 -128101924 - MIR3 SINE MIR -62 146 5 1510 185 67 3 chr11 22682144 22682442 -128101111 + MER89 LTR ERV1 240 556 -3 210 37 0 0 chr11 22682571 22682598 -128100955 + (TTG)n Simple_repeat Simple_repeat 2 28 0 335 270 157 26 chr11 22682703 22682818 -128100735 - MIR3 SINE MIR -48 160 31 277 366 25 6 chr11 22683984 22684145 -128099408 - MIR3 SINE MIR -3 205 42 416 316 32 37 chr11 22684833 22685023 -128098530 - MER5A DNA MER1_type 0 189 1 266 324 36 0 chr11 22685133 22685244 -128098309 - MIR SINE MIR -64 198 84 197 302 0 0 chr11 22685332 22685385 -128098168 - L2 LINE L2 0 3313 3261 818 228 0 0 chr11 22686170 22686332 -128097221 + FRAM SINE Alu 4 165 -11 251 358 11 0 chr11 22686648 22686743 -128096810 + MIR SINE MIR 36 131 -77 261 234 16 16 chr11 22686859 22686923 -128096630 + MIR3 SINE MIR 140 203 -5 234 0 0 0 chr11 22687585 22687611 -128095942 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 21 36 0 0 chr11 22687658 22687686 -128095867 + AT_rich Low_complexity Low_complexity 1 28 0 930 279 50 43 chr11 22688684 22689147 -128094406 - MLT1C LTR MaLR -1 466 1 17966 108 48 2 chr11 22689148 22691737 -128091816 + Charlie3 DNA MER1_type 1 2706 -4 181 211 42 99 chr11 22692316 22692387 -128091166 - L3 LINE CR1 -77 1500 1434 207 0 0 0 chr11 22692389 22692412 -128091141 + (T)n Simple_repeat Simple_repeat 1 23 0 263 247 215 11 chr11 22692508 22692601 -128090952 - MER91C DNA MER1_type 0 140 29 240 35 0 0 chr11 22692985 22693014 -128090539 + (TG)n Simple_repeat Simple_repeat 2 30 0 249 314 68 99 chr11 22693190 22693381 -128090172 + L2 LINE L2 2974 3158 -114 517 322 123 0 chr11 22693457 22693668 -128089885 + MIR SINE MIR 5 241 -21 194 129 32 0 chr11 22693707 22693738 -128089815 + L2 LINE L2 3227 3258 -14 196 311 95 0 chr11 22693744 22693818 -128089735 + L2 LINE L2 3009 3089 -183 2598 38 0 22 chr11 22694031 22694349 -128089204 + AluY SINE Alu 1 311 0 315 346 56 49 chr11 22695859 22696021 -128087532 + MIR3 SINE MIR 31 193 -15 583 298 0 0 chr11 22696126 22696267 -128087286 + MIR SINE MIR 6 146 -116 7018 117 5 25 chr11 22696957 22698060 -128085493 + Tigger1 DNA MER2_type 810 1889 -529 442 320 45 11 chr11 22698064 22698242 -128085311 - L1M4b LINE L1 -6192 667 484 970 208 9 5 chr11 22698281 22698497 -128085056 - L1MD1 LINE L1 0 6242 6026 782 208 0 26 chr11 22698511 22698665 -128084888 - AluJb SINE Alu -29 283 134 1963 178 65 16 chr11 22698668 22699101 -128084452 - L1MD1 LINE L1 -262 5980 5527 1479 209 53 70 chr11 22699109 22699306 -128084247 + MLT1B LTR MaLR 1 189 -201 2598 136 35 57 chr11 22699306 22699814 -128083739 + LOR1a LTR ERV1 1 497 0 1479 209 53 70 chr11 22699814 22700013 -128083540 + MLT1B LTR MaLR 189 390 0 1429 227 41 2 chr11 22700015 22700582 -128082971 - L1MD1 LINE L1 -723 5519 4930 1285 291 75 42 chr11 22700615 22701070 -128082483 - L1MDa LINE L1 -5592 948 510 2223 108 90 0 chr11 22701070 22701414 -128082139 + THE1C LTR MaLR 1 375 0 1285 291 75 42 chr11 22701414 22701491 -128082062 - L1MDa LINE L1 -6030 510 16 340 340 6 37 chr11 22701632 22701794 -128081759 + LTR67 LTR ERVL 132 288 -269 2887 3 0 0 chr11 22701889 22702200 -128081353 - AluYa5 SINE Alu 0 311 1 332 269 308 0 chr11 22703190 22703372 -128080181 - MIR SINE MIR 0 262 25 286 246 0 0 chr11 22703711 22703768 -128079785 + MIR SINE MIR 86 142 -66 462 316 0 0 chr11 22704160 22704274 -128079279 + MIR3 SINE MIR 56 169 -39 28 0 0 0 chr11 22704546 22704574 -128078979 + AT_rich Low_complexity Low_complexity 1 28 0 2153 106 10 0 chr11 22704880 22705173 -128078380 - AluSp SINE Alu -17 296 1 21 0 0 0 chr11 22705248 22705269 -128078284 + AT_rich Low_complexity Low_complexity 1 21 0 308 340 63 19 chr11 22705817 22705976 -128077577 + MIR3 SINE MIR 36 201 -7 375 256 53 68 chr11 22708217 22708231 -128075322 - L2 LINE L2 -5 3267 3254 2058 111 0 31 chr11 22708231 22708559 -128074994 - AluSg1 SINE Alu 0 319 1 375 256 53 68 chr11 22708559 22708676 -128074877 - L2 LINE L2 -18 3254 3137 10648 163 23 12 chr11 22708689 22710623 -128072930 - Tigger1 DNA MER2_type -4 2414 459 16183 180 38 15 chr11 22710623 22718419 -128065134 + L1MA2 LINE L1 15 7723 0 2205 175 99 7 chr11 22718436 22718871 -128064682 - Tigger1 DNA MER2_type -1943 475 1 196 180 33 115 chr11 22719378 22719439 -128064114 - MIR SINE MIR -111 151 96 468 322 13 67 chr11 22720151 22720390 -128063163 - MIR SINE MIR -14 248 23 1362 203 50 10 chr11 22721391 22721691 -128061862 + AluJo SINE Alu 1 312 0 826 235 33 80 chr11 22721834 22722136 -128061417 + MER93b LTR ERV1 19 306 -67 453 231 0 22 chr11 22722136 22722318 -128061235 + (TA)n Simple_repeat Simple_repeat 2 179 0 239 154 0 0 chr11 22722318 22722370 -128061183 + MER57A LTR ERV1 347 398 -5 359 323 24 16 chr11 22722428 22722552 -128061001 - MIR SINE MIR -107 155 31 1226 153 201 13 chr11 22722629 22723123 -128060430 - LTR29 LTR ERV1 -2 608 1 313 295 32 21 chr11 22723550 22723645 -128059908 + MIR3 SINE MIR 96 191 -17 266 286 165 30 chr11 22724120 22724253 -128059300 + MIR SINE MIR 46 196 -66 450 296 86 36 chr11 22725381 22725601 -128057952 + MIR SINE MIR 14 244 -18 244 304 72 0 chr11 22725874 22725943 -128057610 + L2 LINE L2 3118 3191 -81 316 178 33 78 chr11 22725952 22726042 -128057511 - MER90 LTR ERV1 -487 88 3 250 43 0 65 chr11 22726050 22726096 -128057457 + (TTCC)n Simple_repeat Simple_repeat 2 44 0 424 333 70 16 chr11 22726136 22726322 -128057231 - MIR SINE MIR -21 241 46 248 348 17 8 chr11 22726898 22727016 -128056537 + L3 LINE CR1 591 709 -868 740 255 72 94 chr11 22728582 22729166 -128054387 - MLT1G LTR MaLR -4 586 16 243 175 0 0 chr11 22729635 22729692 -128053861 + GA-rich Low_complexity Low_complexity 2 58 0 3844 176 80 20 chr11 22730604 22730714 -128052839 - L1MA9 LINE L1 -33 6279 6177 351 44 0 0 chr11 22730714 22730759 -128052794 + (TG)n Simple_repeat Simple_repeat 1 45 0 3844 176 80 20 chr11 22730759 22731489 -128052064 - L1MA9 LINE L1 -135 6177 5389 3745 198 41 32 chr11 22731489 22731623 -128051930 + L1 LINE L1 4028 4159 -1987 189 0 0 0 chr11 22731623 22731644 -128051909 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 3745 198 41 32 chr11 22731644 22732394 -128051159 + L1 LINE L1 4159 4920 -1226 24 53 0 0 chr11 22734480 22734518 -128049035 + AT_rich Low_complexity Low_complexity 1 38 0 21 36 0 0 chr11 22735094 22735122 -128048431 + AT_rich Low_complexity Low_complexity 1 28 0 511 281 8 8 chr11 22735151 22735272 -128048281 - LTR28 LTR ERV1 0 1020 900 530 259 22 52 chr11 22735352 22735584 -128047969 - LTR1 LTR ERV1 -560 225 1 292 164 16 0 chr11 22735586 22735647 -128047906 + L1ME LINE L1 5543 5604 -517 281 299 35 23 chr11 22735687 22735861 -128047692 + L1ME LINE L1 5691 5866 -255 209 355 0 0 chr11 22736113 22736175 -128047378 - L2 LINE L2 0 3272 3211 235 401 58 11 chr11 22736186 22736460 -128047093 - L2 LINE L2 -457 2857 2571 681 259 80 5 chr11 22736854 22737055 -128046498 - MIR SINE MIR 0 262 47 387 325 12 49 chr11 22737170 22737333 -128046220 + MIR3 SINE MIR 2 158 -50 305 206 68 0 chr11 22737486 22737559 -128045994 + MIR SINE MIR 112 189 -73 2251 99 0 7 chr11 22737636 22737938 -128045615 + AluSx SINE Alu 1 300 -12 400 264 22 143 chr11 22738669 22738751 -128044802 + MIR SINE MIR 17 107 -155 1896 146 141 26 chr11 22738751 22739135 -128044418 - MSTA LTR MaLR 0 428 1 400 264 22 143 chr11 22739135 22739325 -128044228 + MIR SINE MIR 107 256 -6 938 196 179 54 chr11 22739341 22739693 -128043860 + MSTD LTR MaLR 1 396 0 193 232 89 0 chr11 22741253 22741309 -128042244 + MIR SINE MIR 89 149 -113 213 329 53 0 chr11 22741326 22741402 -128042151 + MIR SINE MIR 88 167 -95 311 339 94 0 chr11 22742498 22742625 -128040928 + L2 LINE L2 3128 3266 -6 900 60 0 0 chr11 22743143 22743259 -128040294 + AluY SINE Alu 189 304 -7 212 263 158 32 chr11 22743750 22743845 -128039708 - MIR SINE MIR -150 112 6 299 250 9 69 chr11 22744462 22744578 -128038975 - L3 LINE CR1 -180 1397 1289 285 340 10 10 chr11 22744789 22744889 -128038664 - L2 LINE L2 0 3313 3214 798 309 88 26 chr11 22744890 22745275 -128038278 - MLT1I LTR MaLR 0 409 1 219 330 71 93 chr11 22745276 22745458 -128038095 - L2 LINE L2 -97 3175 2998 216 352 28 37 chr11 22745784 22745892 -128037661 - MIR SINE MIR -86 176 70 864 217 121 84 chr11 22749010 22749425 -128034128 - MSTB1 LTR MaLR -2 430 1 563 198 193 5 chr11 22749870 22750062 -128033491 + LTR37B LTR ERV1 198 425 -43 276 190 77 97 chr11 22750933 22751128 -128032425 + MER31-int LTR ERV1 1248 1438 -3498 275 289 109 23 chr11 22751441 22751569 -128031984 - MIR SINE MIR -65 197 59 227 286 92 73 chr11 22752497 22752691 -128030862 + MIR SINE MIR 11 206 -56 1437 153 77 71 chr11 22752983 22753309 -128030244 - MLT1B LTR MaLR -62 328 1 36505 38 1 0 chr11 22754644 22759897 -128023656 - L1PA3 LINE L1 0 6155 901 6730 65 3 10 chr11 22759893 22760784 -128022769 + L1PA3 LINE L1 24 908 -5238 * 460 264 209 7 chr11 22760909 22761057 -128022496 + MER5A DNA MER1_type 4 181 -8 192 143 191 0 chr11 22761759 22761801 -128021752 - L2 LINE L2 0 3313 3264 4259 156 11 18 chr11 22762137 22762851 -128020702 + MER50 LTR ERV1 1 709 -25 1138 300 123 17 chr11 22762920 22763534 -128020019 + L2 LINE L2 2383 3053 -219 566 267 137 58 chr11 22764104 22764396 -128019157 - L2 LINE L2 0 3313 2999 923 168 19 0 chr11 22764501 22764662 -128018891 + FRAM SINE Alu 5 168 -8 332 224 56 47 chr11 22765046 22765153 -128018400 - MIR SINE MIR -65 197 90 221 266 72 0 chr11 22766486 22766593 -128016960 - MIR SINE MIR -43 219 105 286 216 82 31 chr11 22766852 22766949 -128016604 + Tigger3(Golem) DNA MER2_type 5 106 -2923 * 1571 149 23 70 chr11 22766942 22767242 -128016311 + Tigger3(Golem) DNA MER2_type 2277 2555 -473 1853 136 0 0 chr11 22767242 22767507 -128016046 - AluSc SINE Alu -14 295 31 1571 149 23 70 chr11 22767507 22767603 -128015950 + Tigger3(Golem) DNA MER2_type 2555 2654 -374 839 169 22 0 chr11 22767605 22767741 -128015812 + Tigger3(Golem) DNA MER2_type 2889 3027 -2 967 265 16 4 chr11 22768052 22768305 -128015248 + MIR SINE MIR 6 261 -1 210 91 0 0 chr11 22768522 22768555 -128014998 + (GA)n Simple_repeat Simple_repeat 2 34 0 206 286 0 0 chr11 22769530 22769586 -128013967 - L2 LINE L2 -1 3312 3257 339 317 114 0 chr11 22770062 22770185 -128013368 + MIR SINE MIR 126 262 0 242 233 200 0 chr11 22770210 22770300 -128013253 - MIR SINE MIR -152 110 3 12025 157 30 10 chr11 22770825 22772867 -128010686 + L1PA11 LINE L1 3233 5328 -846 312 27 0 0 chr11 22772867 22772904 -128010649 + (CA)n Simple_repeat Simple_repeat 2 38 0 12025 157 30 10 chr11 22772904 22773768 -128009785 + L1PA11 LINE L1 5328 6173 -1 21 0 0 0 chr11 22774279 22774300 -128009253 + AT_rich Low_complexity Low_complexity 1 21 0 248 0 31 0 chr11 22774567 22774599 -128008954 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 27 49 0 0 chr11 22775708 22775749 -128007804 + AT_rich Low_complexity Low_complexity 1 41 0 348 149 15 0 chr11 22775750 22775817 -128007736 - L1MB2 LINE L1 -27 6144 6077 1008 186 33 14 chr11 22775846 22776061 -128007492 - MER20 DNA MER1_type 0 219 1 24 0 0 0 chr11 22776212 22776236 -128007317 + AT_rich Low_complexity Low_complexity 1 24 0 283 231 50 41 chr11 22776943 22777064 -128006489 - HAL1b LINE L1 -886 462 341 23 54 0 0 chr11 22777228 22777265 -128006288 + AT_rich Low_complexity Low_complexity 1 37 0 362 216 0 0 chr11 22777624 22777698 -128005855 - MLT1H LTR MaLR -401 148 75 296 229 12 0 chr11 22779724 22779807 -128003746 + (TATATG)n Simple_repeat Simple_repeat 3 86 0 274 217 0 22 chr11 22779877 22779969 -128003584 + (TA)n Simple_repeat Simple_repeat 2 91 0 703 203 94 9 chr11 22780502 22780714 -128002839 - Charlie1 DNA MER1_type -2 2759 2530 3798 158 5 0 chr11 22780736 22781351 -128002202 - L1PA12 LINE L1 -75 6093 5476 * 42396 33 23 1 chr11 22781346 22787364 -127996189 - L1PA2 LINE L1 -4 6151 1 853 107 7 0 chr11 22787365 22787505 -127996048 - L1PA12 LINE L1 -676 5485 5345 419 319 138 30 chr11 22788194 22788599 -127994954 + L1MC/D LINE L1 2269 2717 -3429 283 376 35 12 chr11 22788601 22788771 -127994782 - LTR16A LTR ERVL -14 436 263 796 281 58 8 chr11 22789020 22789521 -127994032 + L1MC/D LINE L1 2740 3265 -2881 25 51 0 0 chr11 22789586 22789625 -127993928 + AT_rich Low_complexity Low_complexity 1 39 0 1764 171 3 3 chr11 22789807 22790112 -127993441 - AluJb SINE Alu -7 305 1 264 283 90 12 chr11 22790115 22790281 -127993272 + L1MC/D LINE L1 3625 3803 -2343 639 345 132 32 chr11 22790467 22791463 -127992090 + L1MC/D LINE L1 3861 4955 -1191 538 294 68 35 chr11 22791802 22792186 -127991367 + L1MC/D LINE L1 5264 5658 -584 483 246 45 0 chr11 22792335 22792445 -127991108 + MLT1I LTR MaLR 60 174 -235 1850 156 22 62 chr11 22792449 22792852 -127990701 - MLT1B LTR MaLR 0 390 4 718 204 34 6 chr11 22792858 22793034 -127990519 + MER53 DNA DNA 1 181 -8 359 306 14 34 chr11 22793048 22793254 -127990299 + MLT1I LTR MaLR 170 409 0 530 265 147 15 chr11 22793593 22793797 -127989756 - LTR16C LTR ERVL -5 486 256 1777 188 0 0 chr11 22794952 22795250 -127988303 - AluSx SINE Alu -14 298 1 254 303 0 0 chr11 22795251 22795327 -127988226 + MLT1I LTR MaLR 57 132 -277 439 263 35 0 chr11 22795359 22795473 -127988080 + MLT1I LTR MaLR 292 409 0 21 36 0 0 chr11 22795578 22795606 -127987947 + AT_rich Low_complexity Low_complexity 1 28 0 285 252 136 0 chr11 22795774 22795877 -127987676 + MIR SINE MIR 121 237 -25 432 290 122 15 chr11 22795909 22796405 -127987148 + L1MEd LINE L1 988 1629 -861 1917 144 18 15 chr11 22796586 22796919 -127986634 + MER1B DNA MER1_type 3 336 -1 339 342 155 37 chr11 22797083 22797484 -127986069 + L2 LINE L2 2825 3272 0 1019 219 28 41 chr11 22797832 22798256 -127985297 + MLT1D LTR MaLR 1 505 0 371 314 29 71 chr11 22799663 22799803 -127983750 - L2 LINE L2 0 3272 3139 2223 78 3 0 chr11 22800016 22800311 -127983242 - L1PA7 LINE L1 0 6154 5859 4225 99 0 0 chr11 22800311 22800906 -127982647 + L1P LINE L1 1918 2512 -3634 185 304 41 94 chr11 22801341 22801512 -127982041 - L2 LINE L2 -189 3083 2922 642 209 11 50 chr11 22801801 22801983 -127981570 + MER53 DNA DNA 15 189 0 1866 287 18 40 chr11 22802424 22802856 -127980697 + L1M4 LINE L1 313 728 -5814 1939 141 50 0 chr11 22802856 22803153 -127980400 + AluSx SINE Alu 1 312 0 1866 287 18 40 chr11 22803153 22803341 -127980212 + L1M4 LINE L1 728 919 -5623 182 88 0 29 chr11 22803345 22803379 -127980174 + (TTTTA)n Simple_repeat Simple_repeat 1 33 0 34537 113 16 9 chr11 22803379 22809457 -127974096 - L1PA7 LINE L1 -24 6130 11 266 296 0 10 chr11 22809480 22809578 -127973975 + L1M4 LINE L1 948 1044 -5498 2506 265 23 18 chr11 22809581 22810082 -127973471 + L1M4 LINE L1 1128 1625 -5019 379 58 0 0 chr11 22810082 22810134 -127973419 + L1PA13 LINE L1 6108 6159 -4 2506 265 23 18 chr11 22810134 22810575 -127972978 + L1M4 LINE L1 1625 2133 -4511 1398 179 34 2 chr11 22811147 22811539 -127972014 + L1PA13 LINE L1 2043 2458 -4339 1041 92 26 13 chr11 22811550 22811703 -127971850 + AluSg/x SINE Alu 155 309 0 663 235 36 0 chr11 22811704 22811915 -127971638 + L1P LINE L1 4749 4968 -1178 3143 180 49 21 chr11 22911965 22912675 -127870878 + L1MB5 LINE L1 5411 6140 -34 2180 117 0 0 chr11 22912677 22912975 -127870578 + AluSx SINE Alu 1 298 -14 330 186 152 21 chr11 22913022 22913167 -127870386 + L1MB8 LINE L1 5824 5987 -191 660 9 37 28 chr11 22913543 22913650 -127869903 + (TAGA)n Simple_repeat Simple_repeat 4 111 0 1218 183 7 121 chr11 22913698 22913742 -127869811 + MER21-int LTR ERV1 464 511 -7026 1886 139 38 0 chr11 22913742 22914029 -127869524 - AluSg SINE Alu -12 298 1 1218 183 7 121 chr11 22914029 22914415 -127869138 + MER21-int LTR ERV1 511 845 -6692 623 235 19 12 chr11 22914519 22914681 -127868872 + MER21-int LTR ERV1 857 1019 -4104 230 98 295 0 chr11 22914820 22914881 -127868672 + MER67D LTR ERV1 128 206 -308 818 270 61 24 chr11 22914890 22915186 -127868367 + MER21-int LTR ERV1 1260 4467 -2291 1512 158 124 17 chr11 22915282 22915637 -127867916 - LTR54B LTR ERV1 -2 496 104 222 250 105 13 chr11 22915725 22915801 -127867752 + MIR3 SINE MIR 87 169 -39 377 96 0 0 chr11 22915980 22916032 -127867521 - MLT1B LTR MaLR 0 390 339 574 141 0 0 chr11 22916054 22916139 -127867414 - FLAM_C SINE Alu -24 119 35 1255 185 80 22 chr11 22916142 22916466 -127867087 - MLT1B LTR MaLR -47 343 1 21 95 0 0 chr11 22916691 22916754 -127866799 + AT_rich Low_complexity Low_complexity 1 63 0 200 333 86 12 chr11 22917827 22917908 -127865645 + L2 LINE L2 3195 3281 -32 367 202 53 32 chr11 22917913 22918007 -127865546 - MIR SINE MIR -130 132 37 1542 143 108 21 chr11 22918021 22918308 -127865245 - AluJb SINE Alu 0 312 1 28 0 0 0 chr11 22918460 22918488 -127865065 + AT_rich Low_complexity Low_complexity 1 28 0 1492 203 9 29 chr11 22919031 22919346 -127864207 - AluJb SINE Alu -3 309 1 639 202 0 16 chr11 22919445 22919611 -127863942 - FLAM_C SINE Alu 0 180 17 1875 95 19 8 chr11 22920889 22921151 -127862402 - AluSx SINE Alu -7 305 41 313 325 106 12 chr11 22921191 22921351 -127862202 + L1M4 LINE L1 4039 4213 -1933 278 206 40 119 chr11 22921910 22922036 -127861517 + MIR SINE MIR 134 249 -13 689 266 119 52 chr11 22922374 22922896 -127860657 - L2 LINE L2 -129 3184 1253 * 968 167 52 23 chr11 22922872 22923046 -127860507 + MER5A DNA MER1_type 11 189 0 391 268 86 5 chr11 22923046 22923224 -127860329 - L2 LINE L2 -2028 1286 996 2543 232 98 32 chr11 22923230 22924261 -127859292 + L1M4 LINE L1 2960 4058 -2088 327 280 73 86 chr11 22924285 22924517 -127859036 - L2 LINE L2 0 3272 3044 1240 131 0 0 chr11 22924519 22924694 -127858859 - AluSg/x SINE Alu -4 308 134 2501 61 3 0 chr11 22924694 22924988 -127858565 - AluSx SINE Alu -12 300 6 296 287 37 9 chr11 22924992 22925100 -127858453 + MLT1A1 LTR MaLR 72 182 -183 644 185 47 65 chr11 22925126 22925328 -127858225 + MLT1A1 LTR MaLR 168 396 0 194 274 20 0 chr11 22925926 22925977 -127857576 - MER5B DNA MER1_type 0 178 127 288 263 22 73 chr11 22926000 22926137 -127857416 - MER5B DNA MER1_type 0 178 49 2156 92 7 14 chr11 22926278 22926560 -127856993 - AluSg SINE Alu -28 282 3 1114 180 35 5 chr11 22926807 22927007 -127856546 - AluJb SINE Alu -106 206 1 806 216 103 66 chr11 22927244 22927563 -127855990 + L1ME3A LINE L1 5424 5754 -416 404 208 114 25 chr11 22927784 22927972 -127855581 + MLT1H1 LTR MaLR 341 545 -4 1401 207 42 30 chr11 22927975 22928381 -127855172 + L1ME3A LINE L1 5760 6170 0 914 164 32 50 chr11 22928849 22928981 -127854572 - L1MD2 LINE L1 -27 6332 6204 1937 158 15 55 chr11 22928981 22929385 -127854168 + MLT1B LTR MaLR 3 390 0 914 164 32 50 chr11 22929385 22929472 -127854081 - L1MD2 LINE L1 -155 6204 6117 654 158 151 0 chr11 22930420 22930559 -127852994 - L1MA5 LINE L1 0 6300 6141 547 264 0 0 chr11 22930973 22931094 -127852459 - FLAM_A SINE Alu -14 128 8 585 64 43 0 chr11 22931486 22931580 -127851973 + (GAAA)n Simple_repeat Simple_repeat 2 99 0 220 436 17 12 chr11 22932027 22932199 -127851354 - MIR3 SINE MIR -12 196 24 338 266 292 0 chr11 22932207 22932320 -127851233 + MER5A DNA MER1_type 4 149 -40 234 319 118 0 chr11 22932360 22932479 -127851074 + MIR SINE MIR 74 206 -56 29 60 0 0 chr11 22934444 22934494 -127849059 + AT_rich Low_complexity Low_complexity 1 50 0 251 330 0 21 chr11 22934662 22934756 -127848797 + CT-rich Low_complexity Low_complexity 1 92 0 360 0 0 0 chr11 22936214 22936254 -127847299 + (TG)n Simple_repeat Simple_repeat 2 41 0 552 80 53 0 chr11 22936463 22936576 -127846977 + (TA)n Simple_repeat Simple_repeat 2 120 0 206 256 122 0 chr11 22939335 22939417 -127844136 + MIR SINE MIR 109 200 -62 402 38 0 0 chr11 22942038 22942091 -127841462 - L1M1 LINE L1 -510 5795 5743 22 0 0 0 chr11 22942571 22942593 -127840960 + AT_rich Low_complexity Low_complexity 1 22 0 1257 111 6 0 chr11 22942684 22942856 -127840697 - AluSc SINE Alu -14 295 123 24 32 0 0 chr11 22943193 22943224 -127840329 + AT_rich Low_complexity Low_complexity 1 31 0 231 88 35 18 chr11 22944174 22944231 -127839322 + (TA)n Simple_repeat Simple_repeat 2 59 0 433 301 116 9 chr11 22944361 22944577 -127838976 + L2 LINE L2 3057 3295 -18 473 333 81 5 chr11 22944635 22944833 -127838720 + MIR SINE MIR 29 241 -21 407 215 168 0 chr11 22945409 22945516 -127838037 - MIR3 SINE MIR -34 174 50 26 0 0 0 chr11 22946139 22946165 -127837388 + AT_rich Low_complexity Low_complexity 1 26 0 267 114 0 0 chr11 22946398 22946442 -127837111 + (CA)n Simple_repeat Simple_repeat 2 45 0 33 80 0 0 chr11 22948336 22948411 -127835142 + AT_rich Low_complexity Low_complexity 1 75 0 24 0 0 0 chr11 22948442 22948466 -127835087 + AT_rich Low_complexity Low_complexity 1 24 0 750 234 14 47 chr11 22948608 22948822 -127834731 - L1PB4 LINE L1 0 6156 5950 245 281 116 16 chr11 22948823 22948944 -127834609 - MIR SINE MIR -98 164 32 21 57 0 0 chr11 22949381 22949416 -127834137 + AT_rich Low_complexity Low_complexity 1 35 0 438 293 83 33 chr11 22950498 22950679 -127832874 - MIR SINE MIR 0 262 73 279 0 0 0 chr11 22950715 22950746 -127832807 + (CAAAA)n Simple_repeat Simple_repeat 1 31 0 201 204 57 102 chr11 22950796 22950884 -127832669 - MIR SINE MIR -126 136 53 590 244 99 0 chr11 22951259 22951431 -127832122 + MER5A DNA MER1_type 1 189 0 2369 99 0 0 chr11 22951447 22951751 -127831802 - AluSq SINE Alu -8 305 2 262 336 53 15 chr11 22952089 22952220 -127831333 + MIR SINE MIR 57 192 -70 197 340 10 62 chr11 22952305 22952402 -127831151 - MIR SINE MIR -26 236 145 767 233 157 0 chr11 22952411 22952621 -127830932 - MIR SINE MIR -8 254 12 233 345 35 23 chr11 22952635 22952722 -127830831 - MIR SINE MIR -67 141 54 516 267 130 6 chr11 22953396 22953557 -127829996 + MIR SINE MIR 20 200 -62 1723 169 0 4 chr11 22953923 22954196 -127829357 + AluSx SINE Alu 3 274 -38 246 250 16 147 chr11 22954518 22954702 -127828851 + MIR SINE MIR 90 249 -13 986 223 5 15 chr11 22954761 22954963 -127828590 + MER20 DNA MER1_type 16 215 -4 1834 131 3 28 chr11 22955683 22956002 -127827551 - AluSg SINE Alu 0 312 1 347 260 83 62 chr11 22956336 22956528 -127827025 - L2 LINE L2 0 3313 3118 2590 95 11 5 chr11 22957502 22957870 -127825683 + L1PA10 LINE L1 5799 6168 0 339 270 90 28 chr11 22958416 22958627 -127824926 - L1M4 LINE L1 -2583 3563 3340 24 32 0 0 chr11 22958744 22958775 -127824778 + AT_rich Low_complexity Low_complexity 1 31 0 29 28 0 0 chr11 22958871 22958907 -127824646 + AT_rich Low_complexity Low_complexity 1 36 0 193 263 141 30 chr11 22961529 22961628 -127821925 + MIR SINE MIR 120 229 -33 391 317 115 0 chr11 22961683 22961866 -127821687 - MIR SINE MIR -12 250 47 246 300 154 9 chr11 22962530 22962640 -127820913 + L2 LINE L2 3188 3313 0 1261 151 168 7 chr11 22963434 22963725 -127819828 - MER44D DNA MER2_type 0 609 2 26 64 0 0 chr11 22963816 22963863 -127819690 + AT_rich Low_complexity Low_complexity 1 47 0 2268 92 7 7 chr11 22964092 22964396 -127819157 + AluSx SINE Alu 1 304 -8 327 244 85 80 chr11 22965327 22965728 -127817825 - L1MC5 LINE L1 -52 7909 7507 252 289 91 0 chr11 22965739 22965860 -127817693 - L1ME3A LINE L1 -12 6158 6027 302 306 71 20 chr11 22967733 22967831 -127815722 - L2 LINE L2 -32 3240 3138 244 363 177 0 chr11 22968046 22968159 -127815394 - L2 LINE L2 0 3272 3140 204 343 27 0 chr11 22968530 22968603 -127814950 - L2 LINE L2 0 3272 3198 271 289 24 84 chr11 22969237 22969403 -127814150 + MIR SINE MIR 4 159 -103 219 139 0 0 chr11 22969737 22969773 -127813780 + (TA)n Simple_repeat Simple_repeat 1 36 0 21 0 0 0 chr11 22971065 22971086 -127812467 + AT_rich Low_complexity Low_complexity 1 21 0 1007 94 0 0 chr11 22972459 22972586 -127810967 + AluSg SINE Alu 1 127 -183 2441 246 33 22 chr11 22972833 22973852 -127809701 + L1M4 LINE L1 3475 4600 -1546 776 121 0 26 chr11 22973915 22974031 -127809522 + AluJb SINE Alu 14 126 -186 453 76 0 0 chr11 22974045 22974111 -127809442 + (GA)n Simple_repeat Simple_repeat 2 67 0 839 170 0 0 chr11 22974171 22974306 -127809247 + FLAM_C SINE Alu 6 140 -3 1010 244 44 4 chr11 22974696 22974925 -127808628 + MIR SINE MIR 6 243 -19 2068 100 4 4 chr11 22975250 22975558 -127807995 - AluSg SINE Alu 0 308 1 4558 168 35 7 chr11 22976174 22976985 -127806568 - Ricksha DNA DNA -1091 955 123 396 230 98 46 chr11 22976994 22977168 -127806385 - MLT1J LTR MaLR -328 183 1 660 146 49 24 chr11 22977210 22977333 -127806220 + FLAM_C SINE Alu 5 130 -3 269 36 54 36 chr11 22977342 22977398 -127806155 + (TAAAAA)n Simple_repeat Simple_repeat 4 60 0 209 243 126 78 chr11 22977547 22977650 -127805903 - MIR3 SINE MIR -87 121 14 191 36 36 0 chr11 22977857 22977885 -127805668 + (TTCA)n Simple_repeat Simple_repeat 2 30 0 2011 127 16 19 chr11 22979133 22979441 -127804112 + AluSx SINE Alu 3 309 -3 234 0 0 0 chr11 22980836 22980862 -127802691 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2045 97 7 4 chr11 22981174 22981452 -127802101 - AluSp SINE Alu -5 308 30 261 243 43 0 chr11 22981860 22981930 -127801623 - MIR3 SINE MIR -16 192 120 391 358 68 27 chr11 22981959 22982107 -127801446 + L2 LINE L2 3104 3257 -15 195 42 0 0 chr11 22982112 22982136 -127801417 + (TAAA)n Simple_repeat Simple_repeat 4 27 0 23 33 0 0 chr11 22982503 22982533 -127801020 + AT_rich Low_complexity Low_complexity 1 30 0 228 318 171 35 chr11 22983066 22983588 -127799965 - L2 LINE L2 -345 2969 2377 1632 145 42 19 chr11 22983601 22983863 -127799690 - AluJo SINE Alu -24 288 21 2048 105 28 3 chr11 22984084 22984370 -127799183 - AluSx SINE Alu -9 303 11 352 331 53 93 chr11 22984605 22985194 -127798359 - L2 LINE L2 -1098 2216 1605 368 297 216 0 chr11 22985194 22985342 -127798211 + MER5A DNA MER1_type 10 189 0 352 331 53 93 chr11 22985342 22985896 -127797657 - L2 LINE L2 -1709 1605 977 995 167 18 0 chr11 22985995 22986163 -127797390 - FAM SINE Alu -4 171 1 2031 132 3 0 chr11 22986246 22986533 -127797020 + AluSq SINE Alu 3 290 -23 28 0 0 0 chr11 22986533 22986561 -127796992 + AT_rich Low_complexity Low_complexity 1 28 0 637 206 30 0 chr11 22986794 22986925 -127796628 + FRAM SINE Alu 38 172 -4 326 243 44 29 chr11 22987369 22987505 -127796048 + L1M4c LINE L1 2322 2459 -3925 2264 103 0 0 chr11 22987556 22987858 -127795695 + AluJb SINE Alu 1 302 -10 2065 93 21 0 chr11 22988492 22988781 -127794772 - AluSx SINE Alu -17 295 1 21 57 0 0 chr11 22989513 22989548 -127794005 + AT_rich Low_complexity Low_complexity 1 35 0 1767 124 55 68 chr11 22989775 22989846 -127793707 - THE1C LTR MaLR 0 375 305 2137 77 6 49 chr11 22989846 22990171 -127793382 + AluY SINE Alu 1 311 0 1767 124 55 68 chr11 22990171 22990479 -127793074 - THE1C LTR MaLR -70 305 1 755 235 18 12 chr11 22990546 22990712 -127792841 + MIR SINE MIR 1 167 -95 252 265 88 52 chr11 22990858 22991097 -127792456 - L1MC/D LINE L1 -795 5351 5279 2235 111 3 3 chr11 22991097 22991404 -127792149 - AluSq SINE Alu -6 307 1 252 265 88 52 chr11 22991404 22991515 -127792038 - L1MC/D LINE L1 -867 5279 5173 5198 140 34 12 chr11 22991531 22992436 -127791117 - L1MA8 LINE L1 -3 6288 5364 338 213 0 0 chr11 22992931 22992992 -127790561 - MER58 DNA MER1_type -6 2414 2354 274 209 143 11 chr11 22993071 22993162 -127790391 + L1M4 LINE L1 4779 4881 -1265 821 152 28 7 chr11 22993201 22993346 -127790207 + FRAM SINE Alu 6 153 -23 610 159 138 0 chr11 22994065 22994254 -127789299 + AluJo SINE Alu 4 218 -94 743 184 77 0 chr11 22994889 22995057 -127788496 - MER3 DNA MER1_type -28 181 1 641 120 0 0 chr11 22995115 22995215 -127788338 + L1MB3 LINE L1 6077 6176 -7 216 0 0 0 chr11 22996200 22996224 -127787329 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1318 139 0 5 chr11 22996230 22996417 -127787136 - AluJb SINE Alu -42 270 85 2098 89 11 3 chr11 22997398 22997680 -127785873 + AluSp SINE Alu 1 284 -29 282 167 42 14 chr11 22997704 22997776 -127785777 + HAL1 LINE L1 1566 1639 -868 277 296 50 22 chr11 22997942 22998121 -127785432 + L1M4 LINE L1 2669 2852 -3294 1705 171 3 18 chr11 22998155 22998441 -127785112 + AluJo SINE Alu 1 282 -30 225 0 0 0 chr11 22998445 22998470 -127785083 + (CAA)n Simple_repeat Simple_repeat 2 26 0 26 64 0 0 chr11 22998563 22998610 -127784943 + AT_rich Low_complexity Low_complexity 1 47 0 238 226 0 97 chr11 22998739 22998832 -127784721 - L2 LINE L2 -9 3263 3180 261 320 0 14 chr11 23000427 23000506 -127783047 + AluS SINE Alu 3 70 -232 25 0 0 0 chr11 23001333 23001358 -127782195 + AT_rich Low_complexity Low_complexity 1 25 0 28 29 0 0 chr11 23001863 23001898 -127781655 + AT_rich Low_complexity Low_complexity 1 35 0 486 312 78 55 chr11 23002009 23002496 -127781057 - L1M4 LINE L1 -913 5233 4736 248 221 13 0 chr11 23003224 23003301 -127780252 + (TA)n Simple_repeat Simple_repeat 2 79 0 2247 114 0 0 chr11 23003355 23003661 -127779892 + AluSx SINE Alu 3 308 -4 21 0 0 0 chr11 23003897 23003918 -127779635 + AT_rich Low_complexity Low_complexity 1 21 0 800 299 33 5 chr11 23003939 23004150 -127779403 + MIR SINE MIR 34 250 -12 315 225 0 42 chr11 23004270 23004341 -127779212 + MER5A DNA MER1_type 12 79 -110 1575 73 14 5 chr11 23005020 23005239 -127778314 + L1MA2 LINE L1 6084 6304 0 203 228 70 18 chr11 23005722 23005779 -127777774 + L2 LINE L2 3209 3268 -4 269 219 44 37 chr11 23005796 23005889 -127777664 + MER5A DNA MER1_type 87 189 0 636 254 11 38 chr11 23005917 23006102 -127777451 + LTR67 LTR ERVL 10 189 -368 648 304 76 19 chr11 23006109 23006478 -127777075 + L1ME LINE L1 5412 5801 -361 780 116 23 23 chr11 23006796 23006925 -127776628 + FRAM SINE Alu 29 157 -19 656 298 69 5 chr11 23006969 23007187 -127776366 + MIR SINE MIR 7 238 -24 29 0 0 0 chr11 23007983 23008012 -127775541 + AT_rich Low_complexity Low_complexity 1 29 0 2225 113 3 0 chr11 23008078 23008387 -127775166 - AluSp SINE Alu -3 310 1 186 71 0 0 chr11 23008436 23008464 -127775089 + (TTA)n Simple_repeat Simple_repeat 1 28 0 247 258 0 0 chr11 23008470 23008532 -127775021 - L1ME LINE L1 -469 5652 5591 360 359 6 18 chr11 23012420 23012587 -127770966 - MIR SINE MIR -8 254 90 215 378 40 0 chr11 23012780 23012928 -127770625 - MIR3 SINE MIR -1 207 54 869 207 6 0 chr11 23013226 23013390 -127770163 + FAM SINE Alu 2 166 -9 459 241 107 83 chr11 23013833 23014207 -127769346 - L1ME4a LINE L1 -72 6049 5667 220 241 184 35 chr11 23014379 23014466 -127769087 - L2 LINE L2 0 3272 3173 22 35 0 0 chr11 23015556 23015585 -127767968 + AT_rich Low_complexity Low_complexity 1 29 0 310 200 0 25 chr11 23015617 23015697 -127767856 - L1MC4 LINE L1 -1350 6692 6615 798 285 20 0 chr11 23015734 23015934 -127767619 - MIR SINE MIR -58 204 1 212 250 75 122 chr11 23015936 23015973 -127767580 + MIR SINE MIR 73 110 -152 2184 37 81 0 chr11 23015973 23016244 -127767309 + AluY SINE Alu 1 293 -18 212 250 75 122 chr11 23016244 23016394 -127767159 + MIR SINE MIR 110 251 -11 23 0 0 0 chr11 23016589 23016612 -127766941 + AT_rich Low_complexity Low_complexity 1 23 0 331 331 116 29 chr11 23017282 23017454 -127766099 + MIR3 SINE MIR 16 202 -6 2021 109 35 3 chr11 23017900 23018184 -127765369 - AluSg SINE Alu -17 293 1 311 258 56 11 chr11 23018185 23018274 -127765279 - MIR SINE MIR -66 142 50 400 369 41 73 chr11 23018352 23018721 -127764832 - L2 LINE L2 -11 3261 2905 375 311 129 8 chr11 23018866 23018998 -127764555 - L2 LINE L2 0 3272 3125 235 265 125 80 chr11 23019103 23019303 -127764250 + L2 LINE L2 3104 3312 -1 201 25 25 50 chr11 23020199 23020239 -127763314 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 278 349 64 0 chr11 23020601 23020710 -127762843 + MIR SINE MIR 77 192 -70 204 32 32 81 chr11 23021338 23021400 -127762153 + (TTA)n Simple_repeat Simple_repeat 2 60 0 1863 203 84 18 chr11 23021554 23021992 -127761561 - MLT1C LTR MaLR 0 467 1 353 387 7 0 chr11 23023022 23023159 -127760394 - MER91A DNA MER1_type -38 158 21 551 275 108 14 chr11 23023317 23023539 -127760014 - MER102b DNA MER1_type -3 338 96 827 85 0 0 chr11 23023539 23023645 -127759908 - AluY SINE Alu -7 304 199 207 100 20 40 chr11 23024018 23024068 -127759485 + (TATG)n Simple_repeat Simple_repeat 4 52 0 205 250 80 0 chr11 23024158 23024246 -127759307 - L2 LINE L2 -192 3121 3027 942 113 0 0 chr11 23024252 23024394 -127759159 + (TA)n Simple_repeat Simple_repeat 2 143 0 2105 122 3 0 chr11 23024401 23024687 -127758866 - AluSp SINE Alu -26 287 1 1881 193 47 34 chr11 23024688 23025230 -127758323 + MLT2A2 LTR ERVL 4 554 0 352 212 82 0 chr11 23025237 23025322 -127758231 - LTR16A1 LTR ERVL -2 455 364 1144 335 69 13 chr11 23025324 23025877 -127757676 - L2 LINE L2 -665 2649 2066 378 309 32 0 chr11 23026493 23026616 -127756937 - L2 LINE L2 -1303 2011 1885 253 61 0 0 chr11 23026955 23026988 -127756565 - U2 snRNA snRNA -155 33 1 307 405 8 0 chr11 23027887 23028018 -127755535 - MLT1K LTR MaLR -373 215 84 1034 309 51 24 chr11 23028413 23028824 -127754729 + MLT1J2 LTR MaLR 24 445 -5 22 35 0 0 chr11 23028871 23028900 -127754653 + AT_rich Low_complexity Low_complexity 1 29 0 323 318 128 9 chr11 23029508 23029873 -127753680 - MLT1J LTR MaLR -54 457 13 417 264 18 0 chr11 23031127 23031237 -127752316 + MIR SINE MIR 148 259 -3 998 279 38 62 chr11 23032028 23032476 -127751077 - LTR33 LTR ERVL -6 515 79 399 259 94 41 chr11 23033362 23033532 -127750021 - MLT1H LTR MaLR -370 179 1 350 349 79 0 chr11 23033638 23033790 -127749763 - L2 LINE L2 -498 2816 2653 767 286 39 52 chr11 23033891 23034297 -127749256 - L1ME3 LINE L1 -2 6160 5760 284 209 58 0 chr11 23034333 23034419 -127749134 - L1ME3 LINE L1 -852 5294 5204 777 288 76 17 chr11 23034449 23034615 -127748938 + L1M4 LINE L1 4481 4636 -1510 2436 69 3 0 chr11 23034615 23034918 -127748635 + AluY SINE Alu 1 304 -7 777 288 76 17 chr11 23034918 23035157 -127748396 + L1M4 LINE L1 4636 4910 -1236 29 60 0 0 chr11 23035273 23035323 -127748230 + AT_rich Low_complexity Low_complexity 1 50 0 943 213 85 8 chr11 23035365 23035485 -127748068 + L1MA9 LINE L1 6029 6138 -174 213 39 0 0 chr11 23035485 23035511 -127748042 + (CA)n Simple_repeat Simple_repeat 1 26 0 943 213 85 8 chr11 23035511 23035648 -127747905 + L1MA9 LINE L1 6138 6306 -6 217 330 19 39 chr11 23035662 23035765 -127747788 - L2 LINE L2 -850 2464 2364 437 287 39 33 chr11 23036771 23036952 -127746601 + L2 LINE L2 3132 3313 0 5759 114 4 6 chr11 23037582 23038814 -127744739 + L1PA10 LINE L1 4838 6066 -102 22 0 0 0 chr11 23038814 23038836 -127744717 + AT_rich Low_complexity Low_complexity 1 22 0 871 49 0 49 chr11 23038966 23039088 -127744465 + L1PA10 LINE L1 6053 6168 0 1681 192 50 18 chr11 23039157 23039538 -127744015 + LTR52 LTR ERVL 3 395 -26 203 133 0 0 chr11 23039557 23039587 -127743966 + (GA)n Simple_repeat Simple_repeat 2 31 0 189 0 0 0 chr11 23040411 23040432 -127743121 + (A)n Simple_repeat Simple_repeat 1 21 0 14259 184 30 24 chr11 23041166 23041987 -127741566 + L1MA8 LINE L1 3009 3823 -3887 1796 187 14 14 chr11 23041987 23042335 -127741218 + MER7A DNA MER2_type 1 346 0 14259 184 30 24 chr11 23042335 23044219 -127739334 + L1MA8 LINE L1 3823 5694 -2016 1600 189 20 23 chr11 23044219 23044521 -127739032 - AluJo SINE Alu -10 302 2 14259 184 30 24 chr11 23044521 23045158 -127738395 + L1MA8 LINE L1 5694 6325 -1385 2519 46 0 43 chr11 23045158 23045483 -127738070 + AluY SINE Alu 1 311 0 14259 184 30 24 chr11 23045483 23046773 -127736780 + L1MA8 LINE L1 6325 7707 -3 24 32 0 0 chr11 23046844 23046875 -127736678 + AT_rich Low_complexity Low_complexity 1 31 0 320 329 92 65 chr11 23047405 23047776 -127735777 - L2 LINE L2 0 3272 2892 * 510 266 85 11 chr11 23047744 23047927 -127735626 + MIR SINE MIR 16 212 -50 22 0 0 0 chr11 23048427 23048449 -127735104 + AT_rich Low_complexity Low_complexity 1 22 0 418 333 70 9 chr11 23048468 23048681 -127734872 - MIR SINE MIR -27 235 10 1308 202 29 40 chr11 23049566 23049843 -127733710 + AluJb SINE Alu 1 274 -38 189 0 0 0 chr11 23049844 23049865 -127733688 + (TC)n Simple_repeat Simple_repeat 1 21 0 346 239 0 23 chr11 23049870 23049958 -127733595 - L1MC4 LINE L1 -1339 6703 6618 2202 97 3 7 chr11 23049960 23050327 -127733226 - AluY SINE Alu 0 311 1 234 311 19 57 chr11 23050770 23050876 -127732677 + MIR SINE MIR 79 180 -82 495 276 49 12 chr11 23050878 23051041 -127732512 + MER69A DNA AcHobo 2 170 -7 510 61 0 0 chr11 23051078 23051144 -127732409 + (CA)n Simple_repeat Simple_repeat 2 67 0 185 0 40 0 chr11 23051148 23051173 -127732380 + (GA)n Simple_repeat Simple_repeat 2 27 0 633 186 0 0 chr11 23051175 23051277 -127732276 - MLT2C1 LTR ERVL -62 335 234 3259 192 54 70 chr11 23051284 23051761 -127731792 - L1MA9 LINE L1 -38 6274 5816 513 58 0 0 chr11 23051761 23051830 -127731723 + (TCTA)n Simple_repeat Simple_repeat 2 70 0 3259 192 54 70 chr11 23051830 23052258 -127731295 - L1MA9 LINE L1 -496 5816 5383 2652 200 93 7 chr11 23052261 23052937 -127730616 + L1MA9 LINE L1 4653 5386 -760 1576 206 16 6 chr11 23052937 23053248 -127730305 - MLT2C2 LTR ERVL -150 314 1 35 0 0 0 chr11 23053415 23053450 -127730103 + AT_rich Low_complexity Low_complexity 1 35 0 187 296 19 0 chr11 23054619 23054673 -127728880 - MIR3 SINE MIR -24 184 130 338 219 134 0 chr11 23055003 23055085 -127728468 + MIR3 SINE MIR 108 200 -8 244 298 76 46 chr11 23057262 23057393 -127726160 - L2 LINE L2 0 3313 3179 227 167 37 74 chr11 23058530 23058584 -127724969 - LTR67 LTR ERVL -2 555 504 472 211 18 9 chr11 23058602 23058716 -127724837 - L1MB8 LINE L1 -9 6169 6055 378 265 31 0 chr11 23059591 23059689 -127723864 + L3 LINE CR1 1472 1572 -5 3572 68 12 1 chr11 23060177 23060888 -127722665 - L1PA7 LINE L1 -544 5610 4896 4180 65 2 0 chr11 23060890 23061425 -127722128 + L1PA7 LINE L1 5618 6153 -1 368 339 174 26 chr11 23062099 23062403 -127721150 - L2 LINE L2 -6 3266 2918 393 244 81 116 chr11 23062455 23062627 -127720926 + MIR SINE MIR 11 176 -86 372 276 65 28 chr11 23063411 23063625 -127719928 - L1ME4a LINE L1 -187 5934 5713 23 0 0 0 chr11 23064207 23064230 -127719323 + AT_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chr11 23064914 23064934 -127718619 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 247 310 23 54 chr11 23066202 23066331 -127717222 - MIR3 SINE MIR -3 205 81 1097 214 136 9 chr11 23066417 23066763 -127716790 - Charlie1 DNA MER1_type -4 2757 2368 1459 178 94 12 chr11 23066863 23067183 -127716370 + MER63 DNA MER1_type 672 1017 -45 2612 93 11 0 chr11 23067187 23067562 -127715991 - L1PA10 LINE L1 -499 5632 5254 3750 76 18 0 chr11 23067562 23068061 -127715492 + L1PA10 LINE L1 5656 6164 -4 1915 85 0 35 chr11 23068065 23068416 -127715137 + AluY SINE Alu 35 376 0 1264 197 38 65 chr11 23068638 23069091 -127714462 - MLT1A1 LTR MaLR -3 362 1 206 280 0 0 chr11 23069475 23069525 -127714028 - L2 LINE L2 -2 3311 3262 394 285 23 46 chr11 23070489 23070619 -127712934 + MIR SINE MIR 15 141 -121 552 245 31 46 chr11 23070624 23070820 -127712733 - L2 LINE L2 -1 3312 3120 5709 193 98 22 chr11 23070822 23071117 -127712436 - Charlie1a DNA MER1_type -1310 1451 1180 1490 200 10 13 chr11 23071117 23071417 -127712136 + AluJb SINE Alu 11 309 -3 5709 193 98 22 chr11 23071417 23072205 -127711348 - Charlie1a DNA MER1_type -1581 1180 244 4254 58 0 0 chr11 23072205 23072735 -127710818 - L1PA7 LINE L1 0 6154 5625 5709 193 98 22 chr11 23072735 23072999 -127710554 - Charlie1a DNA MER1_type -2517 244 1 504 269 120 41 chr11 23073042 23073284 -127710269 - L2 LINE L2 -229 3084 2824 257 236 136 45 chr11 23073271 23073381 -127710172 + MIR SINE MIR 132 251 -11 * 338 321 77 84 chr11 23073935 23074222 -127709331 - L2 LINE L2 0 3272 2988 1563 183 24 154 chr11 23074224 23074815 -127708738 - MER67D LTR ERV1 0 514 1 363 386 6 12 chr11 23074923 23075086 -127708467 - MIR SINE MIR -88 174 13 797 234 19 31 chr11 23075410 23075666 -127707887 - L1ME2 LINE L1 -19 6145 5893 1754 190 25 0 chr11 23075678 23076004 -127707549 + MLT2C1 LTR ERVL 5 338 -59 1302 239 75 11 chr11 23076012 23076412 -127707141 - L1ME2 LINE L1 -418 5746 5321 2259 110 0 7 chr11 23077651 23077952 -127705601 - AluSc SINE Alu -10 299 1 325 320 112 39 chr11 23078536 23078878 -127704675 - L2 LINE L2 -221 3051 2685 676 296 64 20 chr11 23078920 23079170 -127704383 - MIR SINE MIR 0 262 2 720 263 31 31 chr11 23079176 23079431 -127704122 - MIR SINE MIR -3 259 5 238 333 63 42 chr11 23079431 23079620 -127703933 - L2 LINE L2 -665 2649 2457 1281 247 183 25 chr11 23079650 23080041 -127703512 - MLT1F1 LTR MaLR 0 567 88 2206 124 11 14 chr11 23080041 23080397 -127703156 - THE1A LTR MaLR 0 355 1 1281 247 183 25 chr11 23080397 23080499 -127703054 - MLT1F1 LTR MaLR -479 88 3 639 267 53 77 chr11 23081457 23081704 -127701849 + MIR SINE MIR 12 252 -10 234 62 0 0 chr11 23081709 23081741 -127701812 + (CAT)n Simple_repeat Simple_repeat 3 34 0 1285 257 80 21 chr11 23081972 23082408 -127701145 + MLT1C LTR MaLR 6 467 0 194 341 84 70 chr11 23082482 23082840 -127700713 + L2 LINE L2 2910 3272 0 24 77 0 0 chr11 23083907 23083959 -127699594 + AT_rich Low_complexity Low_complexity 1 52 0 2043 120 17 0 chr11 23084835 23085126 -127698427 + AluSq SINE Alu 1 296 -17 200 287 8 107 chr11 23085206 23085328 -127698225 + MIR3 SINE MIR 60 169 -39 246 202 124 45 chr11 23085506 23085585 -127697968 - MER103 DNA DNA -70 96 8 508 311 70 48 chr11 23085585 23085984 -127697569 - MLT1I LTR MaLR 0 409 2 219 280 147 0 chr11 23086021 23086096 -127697457 + L3 LINE CR1 1491 1576 -1 267 152 0 0 chr11 23086689 23086735 -127696818 + (TA)n Simple_repeat Simple_repeat 1 46 0 25 31 0 0 chr11 23087822 23087854 -127695699 + AT_rich Low_complexity Low_complexity 1 32 0 290 355 48 24 chr11 23087934 23088100 -127695453 - MIR3 SINE MIR -21 187 18 206 156 0 22 chr11 23088512 23088557 -127694996 + (TTCA)n Simple_repeat Simple_repeat 3 46 0 194 173 0 39 chr11 23088561 23088613 -127694940 + CT-rich Low_complexity Low_complexity 2 51 0 3103 169 41 66 chr11 23089417 23090126 -127693427 + LTR8 LTR ERV1 1 691 0 234 306 24 0 chr11 23090126 23090211 -127693342 + LTR16A LTR ERVL 28 114 -336 1313 211 27 77 chr11 23090382 23090747 -127692806 - MLT1A1 LTR MaLR -18 347 1 254 284 0 35 chr11 23090755 23090871 -127692682 + CT-rich Low_complexity Low_complexity 1 112 0 362 356 85 11 chr11 23091524 23091712 -127691841 + MIR SINE MIR 31 232 -30 1772 234 102 14 chr11 23091719 23092231 -127691322 + MLT1F1 LTR MaLR 1 557 -10 239 345 28 35 chr11 23092614 23092756 -127690797 - MIR SINE MIR -113 149 9 630 317 44 0 chr11 23093989 23094216 -127689337 + MIR SINE MIR 15 251 -11 2105 298 57 18 chr11 23094602 23095374 -127688179 + L2 LINE L2 1934 2735 -579 250 50 25 25 chr11 23095376 23095416 -127688137 + L1P4 LINE L1 5638 5677 -484 437 280 124 97 chr11 23095453 23095662 -127687891 + L2 LINE L2 2741 2943 -370 435 19 0 0 chr11 23095662 23095714 -127687839 + (CA)n Simple_repeat Simple_repeat 2 53 0 437 280 124 97 chr11 23095714 23096062 -127687491 + L2 LINE L2 2943 3313 0 213 407 55 0 chr11 23096149 23096294 -127687259 - MIR3 SINE MIR -28 180 28 4260 134 21 0 chr11 23096462 23097124 -127686429 + L1PA14 LINE L1 5484 6159 -2 830 98 8 0 chr11 23097006 23097128 -127686425 + L1PA13 LINE L1 6041 6163 0 242 116 23 0 chr11 23097633 23097676 -127685877 + CT-rich Low_complexity Low_complexity 1 44 0 22 0 0 0 chr11 23097977 23097999 -127685554 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr11 23098018 23098043 -127685510 + AT_rich Low_complexity Low_complexity 1 25 0 273 254 0 42 chr11 23100677 23100748 -127682805 - MIR SINE MIR 0 262 195 466 272 97 53 chr11 23100749 23100955 -127682598 - MIR SINE MIR -25 237 23 200 333 50 10 chr11 23100947 23101046 -127682507 + L3 LINE CR1 1079 1181 -396 * 648 282 82 37 chr11 23101334 23101579 -127681974 + L3 LINE CR1 1225 1480 -97 25 0 0 0 chr11 23101870 23101895 -127681658 + AT_rich Low_complexity Low_complexity 1 25 0 524 264 0 8 chr11 23101914 23102043 -127681510 - L2 LINE L2 -1 3312 3185 254 304 87 0 chr11 23102117 23102209 -127681344 + L2 LINE L2 3171 3270 -2 551 288 214 57 chr11 23102400 23102494 -127681059 + L3 LINE CR1 1081 1159 -418 799 244 77 5 chr11 23102494 23102703 -127680850 - MER58A DNA MER1_type 0 224 1 551 288 214 57 chr11 23102703 23102745 -127680808 + L3 LINE CR1 1159 1193 -384 2168 127 135 5 chr11 23102745 23103123 -127680430 - MSTA LTR MaLR 0 428 2 551 288 214 57 chr11 23103123 23103405 -127680148 + L3 LINE CR1 1193 1566 -11 532 328 57 15 chr11 23104725 23104990 -127678563 + MER102b DNA MER1_type 56 331 -10 365 257 86 29 chr11 23105096 23105236 -127678317 - LTR33A LTR ERVL -363 160 13 229 313 30 0 chr11 23105342 23105409 -127678144 + MIR3 SINE MIR 126 194 -14 21 0 0 0 chr11 23105612 23105633 -127677920 + AT_rich Low_complexity Low_complexity 1 21 0 182 36 0 36 chr11 23105799 23105827 -127677726 + (CAAA)n Simple_repeat Simple_repeat 1 27 0 27 49 0 0 chr11 23106614 23106655 -127676898 + AT_rich Low_complexity Low_complexity 1 41 0 180 0 0 0 chr11 23107254 23107274 -127676279 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 187 298 68 73 chr11 23108136 23108341 -127675212 - L2 LINE L2 -3 3310 3107 447 351 53 0 chr11 23108845 23109053 -127674500 + L2 LINE L2 2841 3059 -254 285 346 30 0 chr11 23109366 23109467 -127674086 - MLT1L LTR MaLR -344 271 168 207 204 0 0 chr11 23109653 23109697 -127673856 + (TA)n Simple_repeat Simple_repeat 1 44 0 207 0 0 0 chr11 23110600 23110623 -127672930 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 234 0 0 0 chr11 23110920 23110946 -127672607 + (T)n Simple_repeat Simple_repeat 1 26 0 194 323 140 11 chr11 23111258 23111351 -127672202 + MIR3 SINE MIR 68 172 -36 839 301 27 12 chr11 23111598 23111854 -127671699 - MIR SINE MIR 0 262 3 247 282 0 14 chr11 23112616 23112687 -127670866 + MLT1J LTR MaLR 3 72 -439 232 254 42 14 chr11 23112739 23112810 -127670743 + MLT1L LTR MaLR 207 279 -336 24 0 0 0 chr11 23112977 23113001 -127670552 + AT_rich Low_complexity Low_complexity 1 24 0 234 0 0 0 chr11 23113296 23113322 -127670231 + (GA)n Simple_repeat Simple_repeat 1 26 0 323 308 70 23 chr11 23113623 23113837 -127669716 + MLT1L LTR MaLR 374 597 -18 786 219 123 101 chr11 23114236 23114593 -127668960 + MSTD LTR MaLR 1 396 0 202 359 134 14 chr11 23114616 23114758 -127668795 - MIR SINE MIR -70 192 34 803 246 14 33 chr11 23114775 23114990 -127668563 - LTR40a LTR ERVL -306 213 3 21 0 0 0 chr11 23115159 23115180 -127668373 + AT_rich Low_complexity Low_complexity 1 21 0 1060 136 12 12 chr11 23115180 23115349 -127668204 + MSTB LTR MaLR 258 426 0 1172 176 88 0 chr11 23115416 23115632 -127667921 + MER46A DNA MER2_type 1 235 -1 820 153 107 0 chr11 23116006 23116156 -127667397 - MER46A DNA MER2_type -69 167 2 924 217 16 0 chr11 23116688 23116877 -127666676 + MLT2B1 LTR ERVL 9 200 -320 309 335 48 37 chr11 23117213 23117401 -127666152 - MIR SINE MIR -70 192 3 2821 7 0 0 chr11 23117579 23117884 -127665669 - AluYa5 SINE Alu -6 305 1 2381 91 3 0 chr11 23118847 23119145 -127664408 - AluSp SINE Alu -14 299 1 1849 229 35 37 chr11 23119145 23119690 -127663863 - L1ME1 LINE L1 -10 6156 5613 1424 211 31 25 chr11 23119726 23120048 -127663505 + MLT1B LTR MaLR 67 390 0 866 184 57 14 chr11 23120048 23120276 -127663277 - L1ME1 LINE L1 -555 5614 5367 715 281 36 0 chr11 23120286 23120482 -127663071 + MLT1B LTR MaLR 188 390 0 1110 216 37 143 chr11 23121138 23121545 -127662008 + MLT1A2 LTR MaLR 3 366 -8 3030 224 9 9 chr11 23121549 23122215 -127661338 + MLT1A2-int LTR MaLR 1 666 -1069 336 246 139 16 chr11 23123444 23123566 -127659987 + MIR SINE MIR 120 256 -6 181 0 0 65 chr11 23124090 23124121 -127659432 + (CAA)n Simple_repeat Simple_repeat 2 30 0 261 225 50 50 chr11 23125360 23125440 -127658113 + MIR SINE MIR 71 150 -112 229 256 0 41 chr11 23125524 23125645 -127657908 + T-rich Low_complexity Low_complexity 5 120 0 205 171 0 0 chr11 23126202 23126237 -127657316 - L2 LINE L2 -9 3263 3229 207 162 0 0 chr11 23126336 23126373 -127657180 + (TG)n Simple_repeat Simple_repeat 2 38 0 437 309 115 6 chr11 23126391 23126556 -127656997 + MIR3 SINE MIR 4 186 -22 21 71 0 0 chr11 23126638 23126680 -127656873 + AT_rich Low_complexity Low_complexity 1 42 0 2499 57 0 25 chr11 23126971 23127289 -127656264 - AluY SINE Alu -1 310 1 441 316 126 5 chr11 23127530 23127745 -127655808 - MIR SINE MIR -2 260 20 1154 158 6 0 chr11 23127939 23128116 -127655437 - AluJb SINE Alu -4 308 131 483 130 0 0 chr11 23128116 23128193 -127655360 + (TCCC)n Simple_repeat Simple_repeat 3 79 0 1443 181 3 28 chr11 23128195 23128525 -127655028 - AluJo SINE Alu 0 324 2 452 245 0 0 chr11 23128716 23128810 -127654743 - MIR SINE MIR -78 184 91 265 141 0 31 chr11 23129032 23129096 -127654457 + (TAA)n Simple_repeat Simple_repeat 1 62 0 487 213 41 25 chr11 23129161 23129283 -127654270 - MIR SINE MIR 0 262 139 318 26 0 0 chr11 23129455 23129494 -127654059 + (TG)n Simple_repeat Simple_repeat 2 40 0 408 314 85 58 chr11 23129509 23129732 -127653821 - L3 LINE CR1 -5 1572 1344 468 276 29 65 chr11 23129770 23129940 -127653613 + MIR SINE MIR 28 191 -71 2223 123 7 0 chr11 23130922 23131231 -127652322 + AluSq SINE Alu 1 311 -2 183 184 0 0 chr11 23131711 23131749 -127651804 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 196 370 50 25 chr11 23132720 23132839 -127650714 - L2 LINE L2 0 3272 3151 186 309 0 44 chr11 23133931 23133999 -127649554 - L2 LINE L2 -2 3270 3206 679 293 86 0 chr11 23134220 23134452 -127649101 - MIR SINE MIR -6 256 5 676 319 96 69 chr11 23134428 23134657 -127648896 + L2 LINE L2 2199 2420 -894 * 186 43 0 0 chr11 23134657 23134680 -127648873 + (CA)n Simple_repeat Simple_repeat 1 23 0 676 319 96 69 chr11 23134680 23135127 -127648426 + L2 LINE L2 2420 2893 -421 596 328 75 40 chr11 23135177 23135576 -127647977 + L2 LINE L2 2893 3305 -8 233 289 171 66 chr11 23136115 23136402 -127647151 - L3 LINE CR1 -279 1298 982 205 318 94 0 chr11 23136701 23136786 -127646767 + MIR SINE MIR 47 139 -69 282 125 0 0 chr11 23137948 23137996 -127645557 + (CA)n Simple_repeat Simple_repeat 2 49 0 374 174 82 0 chr11 23138756 23138854 -127644699 + L1M4 LINE L1 3875 3980 -2166 2400 44 0 0 chr11 23138878 23139174 -127644379 - L1PA4 LINE L1 -3 6152 5857 24 32 0 0 chr11 23139306 23139337 -127644216 + AT_rich Low_complexity Low_complexity 1 31 0 391 336 95 75 chr11 23140203 23140498 -127643055 - L2 LINE L2 0 3272 2972 690 229 6 13 chr11 23140684 23140841 -127642712 + MLT1C LTR MaLR 310 465 -2 1649 185 35 72 chr11 23140856 23141261 -127642292 + MLT1B LTR MaLR 1 390 0 342 306 75 0 chr11 23142746 23142880 -127640673 - MIR SINE MIR -10 252 109 423 328 27 16 chr11 23143254 23143440 -127640113 + MIR3 SINE MIR 21 208 0 209 176 0 0 chr11 23143608 23143642 -127639911 + (CA)n Simple_repeat Simple_repeat 1 34 0 1474 169 74 24 chr11 23143716 23144012 -127639541 - AluJo SINE Alu 0 312 2 326 189 25 25 chr11 23144436 23144558 -127638995 + T-rich Low_complexity Low_complexity 4 125 0 1379 104 14 5 chr11 23144561 23144781 -127638772 - L1MA9 LINE L1 0 6312 6091 472 226 35 17 chr11 23145368 23145483 -127638070 - L2 LINE L2 -1 3312 3196 21 36 0 0 chr11 23145937 23145965 -127637588 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr11 23146099 23146120 -127637433 + AT_rich Low_complexity Low_complexity 1 21 0 3026 241 99 33 chr11 23146394 23147282 -127636271 - L1ME1 LINE L1 -5 6161 5333 1762 116 11 4 chr11 23147282 23147550 -127636003 - L1PA10 LINE L1 -1 6167 5898 3026 241 99 33 chr11 23147550 23148608 -127634945 - L1ME1 LINE L1 -833 5333 4346 2192 57 0 93 chr11 23148608 23148941 -127634612 - AluY SINE Alu -9 302 1 3026 241 99 33 chr11 23148941 23149063 -127634490 - L1ME1 LINE L1 -1820 4346 4234 1340 200 54 41 chr11 23149063 23149358 -127634195 - AluSx SINE Alu -13 299 1 3026 241 99 33 chr11 23149358 23149481 -127634072 - L1ME1 LINE L1 -1932 4234 3859 418 269 119 43 chr11 23149486 23149980 -127633573 - L1ME4a LINE L1 -158 5963 5403 460 298 23 0 chr11 23150071 23150202 -127633351 - MIR SINE MIR 0 262 129 219 254 0 0 chr11 23151399 23151458 -127632095 + A-rich Low_complexity Low_complexity 2 60 0 1682 150 0 4 chr11 23153075 23153328 -127630225 - AluSx SINE Alu -60 252 1 246 32 0 0 chr11 23154206 23154237 -127629316 + (TG)n Simple_repeat Simple_repeat 2 32 0 419 276 18 80 chr11 23154243 23154406 -127629147 - MIR SINE MIR -71 191 39 353 324 29 7 chr11 23154419 23154558 -127628995 + MIR SINE MIR 71 212 -50 253 350 45 32 chr11 23155288 23155356 -127628197 + MIR SINE MIR 2 68 -194 2328 70 0 22 chr11 23155356 23155668 -127627885 + AluY SINE Alu 1 305 -6 253 350 45 32 chr11 23155668 23155819 -127627734 + MIR SINE MIR 68 224 -38 225 159 0 0 chr11 23156831 23156875 -127626678 + T-rich Low_complexity Low_complexity 1 44 0 1782 168 55 0 chr11 23156885 23157177 -127626376 - AluSx SINE Alu -4 308 1 245 282 26 26 chr11 23157204 23157282 -127626271 + MLT1K LTR MaLR 188 265 -323 236 356 87 0 chr11 23159724 23159839 -127623714 + MIR3 SINE MIR 43 167 -41 545 96 0 0 chr11 23159841 23159924 -127623629 - L1PA13 LINE L1 -7 6156 6074 2554 33 0 3 chr11 23160210 23160517 -127623036 + L1PA3 LINE L1 5845 6150 -5 2227 124 0 0 chr11 23160855 23161161 -127622392 + AluSg1 SINE Alu 1 306 -3 313 159 120 3 chr11 23161662 23161752 -127621801 - L1MD3 LINE L1 0 7808 7723 1596 234 50 46 chr11 23161799 23162300 -127621253 - MLT1D LTR MaLR -2 503 1 1146 206 14 18 chr11 23162300 23162576 -127620977 - L1MD3 LINE L1 -80 7915 7641 264 302 12 0 chr11 23163482 23163568 -127619985 - MLT1I LTR MaLR -256 153 67 405 309 64 21 chr11 23163582 23163770 -127619783 - L1ME LINE L1 -530 5591 5396 202 239 91 11 chr11 23164094 23164182 -127619371 + MIR SINE MIR 125 219 -43 22 70 0 0 chr11 23164591 23164634 -127618919 + AT_rich Low_complexity Low_complexity 1 43 0 577 366 18 4 chr11 23164731 23164958 -127618595 - MIR SINE MIR -13 249 20 26 0 0 0 chr11 23165144 23165170 -127618383 + AT_rich Low_complexity Low_complexity 1 26 0 234 0 0 0 chr11 23165190 23165216 -127618337 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 42514 35 22 1 chr11 23165216 23171224 -127612329 - L1PA3 LINE L1 -13 6142 4 216 0 0 0 chr11 23172833 23172857 -127610696 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 599 207 0 25 chr11 23172860 23172981 -127610572 - FLAM_A SINE Alu -15 118 1 329 255 35 20 chr11 23173053 23173287 -127610266 - L1ME3A LINE L1 -53 6117 5844 305 256 8 83 chr11 23173344 23173477 -127610076 - L1ME3A LINE L1 -331 5839 5717 888 271 139 15 chr11 23173691 23174030 -127609523 - L2 LINE L2 -559 2755 2375 237 312 57 43 chr11 23174696 23174837 -127608716 + L2 LINE L2 2909 3051 -221 389 230 147 23 chr11 23175245 23175409 -127608144 + MLT1H LTR MaLR 6 159 -291 309 257 0 0 chr11 23175409 23175479 -127608074 - MER96 DNA MER1_type? -3 172 103 346 359 24 53 chr11 23175943 23176149 -127607404 + L2 LINE L2 2912 3111 -202 319 307 64 14 chr11 23176242 23176382 -127607171 - MIR SINE MIR -42 220 74 374 291 77 46 chr11 23176670 23176866 -127606687 - L1ME3A LINE L1 -517 5604 5403 249 108 0 0 chr11 23179518 23179555 -127603998 + (A)n Simple_repeat Simple_repeat 1 37 0 1544 85 0 5 chr11 23179633 23179833 -127603720 + AluSq SINE Alu 1 199 -114 337 91 0 0 chr11 23179833 23179877 -127603676 + AluSq SINE Alu 246 289 -11 626 304 55 5 chr11 23180477 23180694 -127602859 - MIR SINE MIR 0 262 35 395 164 75 0 chr11 23182735 23182802 -127600751 - L2 LINE L2 -1 3312 3241 1455 185 26 86 chr11 23182839 23183223 -127600330 + MLT1A2 LTR MaLR 1 361 -13 220 313 37 86 chr11 23183335 23183603 -127599950 - L2 LINE L2 -207 3065 2811 267 316 235 0 chr11 23183607 23183854 -127599699 + L3 LINE CR1 1269 1573 -4 6192 160 13 16 chr11 23184054 23185122 -127598431 + Tigger1 DNA MER2_type 1 1065 -1353 1535 159 17 60 chr11 23185119 23185420 -127598133 + Tigger1 DNA MER2_type 2130 2417 -1 * 183 42 0 0 chr11 23186106 23186130 -127597423 + (CA)n Simple_repeat Simple_repeat 2 25 0 228 205 0 0 chr11 23186690 23186729 -127596824 - Charlie4 DNA MER1_type 0 1961 1923 1839 244 52 48 chr11 23186746 23187283 -127596270 - MLT1F LTR MaLR -3 539 1 554 358 123 34 chr11 23187427 23187955 -127595598 - L2 LINE L2 -344 2970 2396 420 266 101 18 chr11 23189019 23189188 -127594365 + MIR SINE MIR 6 188 -74 203 218 91 18 chr11 23190790 23190845 -127592708 + L2 LINE L2 3193 3251 -62 2228 87 0 62 chr11 23191398 23191719 -127591834 - AluY SINE Alu -10 301 1 21 0 0 0 chr11 23192598 23192619 -127590934 + AT_rich Low_complexity Low_complexity 1 21 0 536 269 39 8 chr11 23192694 23192824 -127590729 - L2 LINE L2 -2 3270 3137 216 305 0 0 chr11 23193096 23193155 -127590398 + MIR SINE MIR 178 236 -26 210 243 56 93 chr11 23193170 23193277 -127590276 - MIR SINE MIR -24 238 136 2490 135 10 0 chr11 23193287 23193679 -127589874 - L1PA16 LINE L1 -2 6164 5769 5355 198 13 5 chr11 23193680 23197061 -127586492 - L1PA15 LINE L1 -2 7601 4054 4380 279 57 53 chr11 23197063 23199120 -127584433 - L1PA15 LINE L1 -5508 2073 8 3102 157 24 2 chr11 23199128 23199787 -127583766 - L1P4 LINE L1 -384 5782 5102 727 213 11 17 chr11 23199791 23199965 -127583588 + L1P LINE L1 4825 4997 -1149 309 276 35 35 chr11 23200280 23200396 -127583157 + MIR SINE MIR 82 197 -65 457 293 56 84 chr11 23200754 23200885 -127582668 + MIR SINE MIR 18 140 -122 378 0 0 0 chr11 23200885 23200927 -127582626 + (TG)n Simple_repeat Simple_repeat 1 42 0 457 293 56 84 chr11 23200927 23201044 -127582509 + MIR SINE MIR 140 259 -3 830 93 0 0 chr11 23202368 23202476 -127581077 - AluY SINE Alu -203 108 1 363 309 72 7 chr11 23202509 23202648 -127580905 - HAL1 LINE L1 -770 1737 1590 555 204 78 28 chr11 23202658 23202866 -127580687 - MLT1H LTR MaLR -24 602 311 256 240 280 24 chr11 23202981 23203106 -127580447 - MLT1H LTR MaLR -392 157 1 248 345 23 0 chr11 23204108 23204195 -127579358 - MLT-int LTR MaLR -1209 526 438 1627 159 26 4 chr11 23204462 23204732 -127578821 + AluSx SINE Alu 22 297 -15 286 364 50 16 chr11 23204825 23204946 -127578607 + L2 LINE L2 3148 3272 0 282 279 211 0 chr11 23205385 23205489 -127578064 - MIR SINE MIR -89 173 48 189 0 0 0 chr11 23205517 23205538 -127578015 + (A)n Simple_repeat Simple_repeat 1 21 0 289 270 145 54 chr11 23206768 23207064 -127576489 - L2 LINE L2 0 3313 2991 1597 117 26 0 chr11 23207066 23207331 -127576222 + L1MA3 LINE L1 6033 6304 -1 278 250 21 42 chr11 23208916 23209012 -127574541 + LTR67 LTR ERVL 432 525 -32 21 36 0 0 chr11 23209149 23209177 -127574376 + AT_rich Low_complexity Low_complexity 1 28 0 508 296 164 0 chr11 23210712 23210871 -127572682 - MER5A DNA MER1_type -1 188 4 576 337 28 35 chr11 23210918 23211173 -127572380 + MIR SINE MIR 10 262 0 22 0 0 0 chr11 23212955 23212977 -127570576 + AT_rich Low_complexity Low_complexity 1 22 0 567 320 61 48 chr11 23213039 23213480 -127570073 + L1M4 LINE L1 4384 4830 -1316 1519 148 3 33 chr11 23213513 23213816 -127569737 + L1PA13 LINE L1 5870 6163 0 2665 163 38 4 chr11 23213912 23214414 -127569139 + L1MA8 LINE L1 5732 6249 -42 2127 184 35 11 chr11 23214415 23214845 -127568708 + MSTB LTR MaLR 1 425 -1 23 54 0 0 chr11 23215317 23215354 -127568199 + AT_rich Low_complexity Low_complexity 1 37 0 22 56 0 0 chr11 23216562 23216598 -127566955 + AT_rich Low_complexity Low_complexity 1 36 0 182 321 24 12 chr11 23218977 23219061 -127564492 + L2 LINE L2 3153 3237 -76 315 0 0 0 chr11 23219795 23219830 -127563723 + (TG)n Simple_repeat Simple_repeat 2 36 0 2060 172 40 27 chr11 23221052 23221597 -127561956 - MLT2A2 LTR ERVL 0 554 1 230 281 35 35 chr11 23222775 23222889 -127560664 - LTR67 LTR ERVL -5 552 439 219 139 0 0 chr11 23223213 23223249 -127560304 + (TTC)n Simple_repeat Simple_repeat 2 37 0 348 294 59 8 chr11 23223299 23223418 -127560135 - MIR SINE MIR -1 261 137 605 129 207 9 chr11 23223518 23223634 -127559919 + MLT1A1 LTR MaLR 1 139 -226 1151 189 120 21 chr11 23223715 23224006 -127559547 - MER31B LTR ERV1 -143 323 4 2145 129 0 0 chr11 23224305 23224616 -127558937 + AluSq SINE Alu 3 313 0 22 35 0 0 chr11 23224644 23224673 -127558880 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr11 23225179 23225202 -127558351 + AT_rich Low_complexity Low_complexity 1 23 0 25 31 0 0 chr11 23225546 23225578 -127557975 + AT_rich Low_complexity Low_complexity 1 32 0 225 299 47 9 chr11 23225591 23225698 -127557855 - HAL1b LINE L1 -41 1307 1197 623 292 160 19 chr11 23226075 23226406 -127557147 - LTR33A LTR ERVL -153 370 25 247 253 142 31 chr11 23226437 23226599 -127556954 - HAL1b LINE L1 -381 967 788 306 0 0 0 chr11 23226636 23226670 -127556883 + (CA)n Simple_repeat Simple_repeat 2 35 0 2299 81 0 10 chr11 23226786 23227093 -127556460 + AluY SINE Alu 1 304 -7 356 230 71 0 chr11 23227130 23227243 -127556310 - HAL1b LINE L1 -772 576 456 652 264 78 74 chr11 23227266 23227818 -127555735 - HAL1b LINE L1 -701 647 94 457 115 23 11 chr11 23228107 23228194 -127555359 + CT-rich Low_complexity Low_complexity 2 89 0 2049 106 7 10 chr11 23228311 23228604 -127554949 + AluY SINE Alu 1 292 -19 530 306 70 15 chr11 23228693 23228931 -127554622 + MIR SINE MIR 2 252 -10 2251 121 11 11 chr11 23230192 23230547 -127553006 + THE1A LTR MaLR 1 355 0 225 280 53 13 chr11 23230872 23230947 -127552606 + MIR SINE MIR 128 205 -57 3085 189 77 31 chr11 23231375 23232157 -127551396 + L1MDa LINE L1 1108 1935 -4605 1999 85 3 59 chr11 23232157 23232510 -127551043 + AluSq SINE Alu 1 313 0 3085 189 77 31 chr11 23232510 23232598 -127550955 + L1MDa LINE L1 1935 2018 -4522 25 31 0 0 chr11 23232796 23232828 -127550725 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr11 23233421 23233444 -127550109 + AT_rich Low_complexity Low_complexity 1 23 0 27 29 0 0 chr11 23234213 23234247 -127549306 + AT_rich Low_complexity Low_complexity 1 34 0 23 0 0 0 chr11 23234634 23234657 -127548896 + AT_rich Low_complexity Low_complexity 1 23 0 303 388 81 37 chr11 23235043 23235544 -127548009 - L2 LINE L2 -25 3247 2716 2803 269 118 49 chr11 23235582 23236293 -127547260 - L2 LINE L2 -4 3309 2649 4946 144 20 47 chr11 23236293 23237230 -127546323 + L1MC1 LINE L1 5422 6333 0 2803 269 118 49 chr11 23237230 23238043 -127545510 - L2 LINE L2 -664 2649 1699 10464 42 1 0 chr11 23238043 23240092 -127543461 + L1PA4 LINE L1 4102 6152 -3 442 211 51 143 chr11 23240101 23240338 -127543215 - MER69 DNA AcHobo -295 2231 2017 2194 104 3 3 chr11 23240702 23240999 -127542554 - AluSx SINE Alu -15 297 1 1964 72 4 0 chr11 23241858 23242123 -127541430 - L1PA13 LINE L1 -4 6159 5894 315 230 324 7 chr11 23242160 23242299 -127541254 + ERVL LTR ERVL 1782 1964 -3800 337 354 68 41 chr11 23242678 23243119 -127540434 + ERVL LTR ERVL 2506 2958 -2806 306 335 24 0 chr11 23243129 23243276 -127540277 + ERVL LTR ERVL 3302 3490 -2203 493 122 31 31 chr11 23243282 23243380 -127540173 + MER4A LTR ERV1 1 98 -566 1738 137 3 77 chr11 23243380 23243753 -127539800 + MER4A LTR ERV1 261 664 0 27 73 0 0 chr11 23245746 23245801 -127537752 + AT_rich Low_complexity Low_complexity 1 55 0 2691 162 25 0 chr11 23246739 23247226 -127536327 - L1PA16 LINE L1 -4 6162 5664 25 31 0 0 chr11 23247412 23247444 -127536109 + AT_rich Low_complexity Low_complexity 1 32 0 669 78 0 0 chr11 23247596 23247686 -127535867 - 5S rRNA rRNA -31 90 1 220 234 0 0 chr11 23247831 23247878 -127535675 - MIR SINE MIR -109 153 107 235 295 115 13 chr11 23248443 23248521 -127535032 + MIR SINE MIR 21 106 -156 751 174 10 103 chr11 23248563 23248689 -127534864 + MER5B DNA MER1_type 2 105 -73 1382 226 3 10 chr11 23248689 23248994 -127534559 - AluJb SINE Alu -9 303 1 751 174 10 103 chr11 23248994 23249062 -127534491 + MER5B DNA MER1_type 105 178 0 27 0 0 0 chr11 23249146 23249173 -127534380 + AT_rich Low_complexity Low_complexity 1 27 0 1911 150 0 38 chr11 23249267 23249581 -127533972 - AluSx SINE Alu -10 302 1 22 0 0 0 chr11 23249584 23249606 -127533947 + AT_rich Low_complexity Low_complexity 1 22 0 665 171 8 16 chr11 23250852 23250975 -127532578 - FRAM SINE Alu -33 143 22 1457 157 4 24 chr11 23251145 23251400 -127532153 + AluJb SINE Alu 1 250 -62 28 29 0 0 chr11 23252335 23252370 -127531183 + AT_rich Low_complexity Low_complexity 1 35 0 1940 125 14 4 chr11 23252451 23252751 -127530802 + AluSx SINE Alu 1 303 0 275 131 115 16 chr11 23253123 23253184 -127530369 - Alu SINE Alu -2 300 234 1584 101 140 0 chr11 23253184 23253412 -127530141 - AluSc SINE Alu -49 260 1 22 0 0 0 chr11 23254031 23254053 -127529500 + AT_rich Low_complexity Low_complexity 1 22 0 26 82 0 0 chr11 23254126 23254187 -127529366 + AT_rich Low_complexity Low_complexity 1 61 0 303 298 48 12 chr11 23255081 23255165 -127528388 - L2 LINE L2 0 3272 3186 482 224 17 9 chr11 23255379 23255495 -127528058 + AluJ SINE Alu 1 117 -185 521 185 23 116 chr11 23255495 23255568 -127527985 + AluJb SINE Alu 92 141 -171 1890 152 41 22 chr11 23255568 23255936 -127527617 - THE1C LTR MaLR 0 375 1 521 185 23 116 chr11 23255936 23256035 -127527518 + AluJb SINE Alu 141 248 -64 11463 27 1 1 chr11 23256308 23258038 -127525515 - L1P1 LINE L1 -408 5747 4019 5529 42 0 0 chr11 23258036 23258721 -127524832 + L1P LINE L1 3197 3881 -2265 * 852 236 36 36 chr11 23258722 23259027 -127524526 + MER69 DNA AcHobo 2222 2526 0 580 247 48 32 chr11 23259592 23259778 -127523775 + MIR SINE MIR 72 260 -2 356 293 111 20 chr11 23260012 23260210 -127523343 + L2 LINE L2 3098 3313 0 2057 130 3 0 chr11 23261507 23261807 -127521746 + AluSx SINE Alu 1 301 -11 935 244 101 30 chr11 23264149 23264546 -127519007 - Charlie4a DNA MER1_type -8 500 76 324 0 0 0 chr11 23264547 23264583 -127518970 + (TA)n Simple_repeat Simple_repeat 2 37 0 246 231 39 26 chr11 23264913 23264991 -127518562 - MIR SINE MIR -1 261 183 916 340 1 13 chr11 23264993 23265369 -127518184 + L2 LINE L2 2699 3070 -243 606 360 109 37 chr11 23265843 23266292 -127517261 - L2 LINE L2 -244 3028 2516 6327 28 3 0 chr11 23266292 23267038 -127516515 - L1PA3 LINE L1 0 6155 5408 606 360 109 37 chr11 23267038 23267206 -127516347 - L2 LINE L2 -756 2516 2362 637 261 142 9 chr11 23268337 23268563 -127514990 - MIR SINE MIR -5 257 2 444 338 40 14 chr11 23268610 23268758 -127514795 - L2 LINE L2 -4 3268 3117 5042 33 0 5 chr11 23269531 23270133 -127513420 + L1PA3 LINE L1 5556 6154 -1 207 0 0 0 chr11 23270138 23270161 -127513392 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 240 149 0 0 chr11 23270430 23270477 -127513076 + (TG)n Simple_repeat Simple_repeat 2 48 0 24 32 0 0 chr11 23270584 23270615 -127512938 + AT_rich Low_complexity Low_complexity 1 31 0 16840 164 34 17 chr11 23270902 23272749 -127510804 + L1PBa LINE L1 1 1815 -5047 1773 157 43 3 chr11 23272749 23273049 -127510504 + AluSx SINE Alu 1 312 0 16840 164 34 17 chr11 23273049 23275138 -127508415 + L1PBa LINE L1 1815 4032 -2830 2175 118 3 3 chr11 23275138 23275442 -127508111 + AluSg SINE Alu 4 307 -3 16840 164 34 17 chr11 23275442 23276314 -127507239 + L1PBa LINE L1 4032 4888 -1974 1265 201 14 17 chr11 23276315 23276608 -127506945 + AluSx SINE Alu 4 295 -17 3138 27 5 0 chr11 23276848 23277265 -127506288 + L1PA4 LINE L1 5765 6183 0 560 301 64 23 chr11 23277284 23277503 -127506050 - L2 LINE L2 -1689 1625 1398 256 305 39 47 chr11 23277510 23277638 -127505915 - L2 LINE L2 -614 2700 2574 226 324 0 0 chr11 23277803 23277871 -127505682 - L2 LINE L2 -803 2511 2444 3894 109 3 33 chr11 23277953 23278588 -127504965 - L1MA1 LINE L1 0 7721 7106 4738 115 5 0 chr11 23278591 23279258 -127504295 - THE1B-int LTR MaLR -910 670 1 1617 135 65 117 chr11 23279258 23279642 -127503911 - THE1B LTR MaLR 0 364 1 2130 114 37 14 chr11 23279643 23279993 -127503560 - L1MA1 LINE L1 -658 7063 6706 1431 183 70 18 chr11 23280000 23280284 -127503269 - MER1B DNA MER1_type -40 299 1 19697 178 41 12 chr11 23280284 23283524 -127500029 - L1MA1 LINE L1 -857 6708 3563 183 42 0 0 chr11 23283524 23283548 -127500005 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 19697 178 41 12 chr11 23283548 23286819 -127496734 - L1MA1 LINE L1 -4002 3563 13 1138 286 70 40 chr11 23286829 23287245 -127496308 - L2 LINE L2 -954 2360 1923 1669 139 92 47 chr11 23287245 23287433 -127496120 + THE1C LTR MaLR 1 179 -196 327 49 0 0 chr11 23287433 23287474 -127496079 + (TC)n Simple_repeat Simple_repeat 1 41 0 1669 139 92 47 chr11 23287474 23287644 -127495909 + THE1C LTR MaLR 179 375 0 1138 286 70 40 chr11 23287644 23287754 -127495799 - L2 LINE L2 -1391 1923 1818 343 297 97 60 chr11 23287973 23288407 -127495146 + L1MEd LINE L1 787 1236 -5136 579 307 63 37 chr11 23288601 23288901 -127494652 - MLT1J LTR MaLR -196 315 8 515 321 108 44 chr11 23288910 23289490 -127494063 + L1MEd LINE L1 1290 1811 -4573 308 286 135 22 chr11 23289810 23289988 -127493565 + L1MEd LINE L1 2643 2840 -3542 303 311 97 10 chr11 23290125 23290228 -127493325 - L2 LINE L2 -1 3271 3160 280 269 151 8 chr11 23291081 23291200 -127492353 - MIR3 SINE MIR -31 177 42 2224 86 10 3 chr11 23291217 23291507 -127492046 + AluSg SINE Alu 1 292 -18 210 310 17 0 chr11 23293772 23293830 -127489723 - L2 LINE L2 -7 3265 3207 1088 97 0 0 chr11 23294455 23294600 -127488953 - AluSq/x SINE Alu -166 147 3 180 380 110 0 chr11 23294765 23294865 -127488688 - L2 LINE L2 0 3272 3162 1996 132 0 43 chr11 23294991 23295317 -127488236 + AluSx SINE Alu 1 312 0 26 30 0 0 chr11 23296036 23296069 -127487484 + AT_rich Low_complexity Low_complexity 1 33 0 4522 114 4 47 chr11 23296146 23296892 -127486661 - L1PB3 LINE L1 0 6154 5441 6976 210 29 47 chr11 23296893 23297559 -127485994 - L1P5 LINE L1 -579 5632 4956 2549 51 0 0 chr11 23297559 23297874 -127485679 - L1PA5 LINE L1 -4 6150 5836 6976 210 29 47 chr11 23297874 23299743 -127483810 - L1P5 LINE L1 -1255 4956 3295 5861 188 18 12 chr11 23299752 23301514 -127482039 - L1P5 LINE L1 -4254 1950 171 2223 148 3 24 chr11 23301514 23301886 -127481667 - THE1B LTR MaLR 0 364 1 5861 188 18 12 chr11 23301886 23302059 -127481494 - L1P5 LINE L1 -6033 171 1 3213 272 26 91 chr11 23302027 23303772 -127479781 - L1PBa LINE L1 -5227 1636 5 * 223 245 19 0 chr11 23303873 23303926 -127479627 + MIR SINE MIR 157 210 -52 284 259 54 36 chr11 23303992 23304104 -127479449 + MLT1L LTR MaLR 87 200 -415 261 203 60 8 chr11 23304334 23304467 -127479086 + (TA)n Simple_repeat Simple_repeat 1 140 0 * 282 180 52 35 chr11 23304379 23304551 -127479002 + (TTATA)n Simple_repeat Simple_repeat 5 179 0 377 89 30 75 chr11 23304583 23305020 -127478533 + (TTATA)n Simple_repeat Simple_repeat 1 417 0 230 88 44 62 chr11 23305032 23305145 -127478408 + (TTATA)n Simple_repeat Simple_repeat 3 113 0 239 81 23 81 chr11 23305147 23305234 -127478319 + (TATAA)n Simple_repeat Simple_repeat 5 86 0 * 399 200 48 6 chr11 23305187 23305352 -127478201 + (TA)n Simple_repeat Simple_repeat 2 173 0 2148 131 0 0 chr11 23305869 23306167 -127477386 - AluSx SINE Alu -14 298 1 1238 222 136 11 chr11 23306664 23307016 -127476537 + MSTD LTR MaLR 1 396 0 21 36 0 0 chr11 23307214 23307242 -127476311 + AT_rich Low_complexity Low_complexity 1 28 0 422 279 43 53 chr11 23308490 23308698 -127474855 + LTR33 LTR ERVL 15 220 -301 328 172 0 0 chr11 23308725 23308783 -127474770 + L1MC4 LINE L1 6648 6705 -1337 323 281 22 0 chr11 23308759 23308848 -127474705 - L1MC4 LINE L1 -1339 6703 6613 * 225 119 0 0 chr11 23308848 23308890 -127474663 + (TA)n Simple_repeat Simple_repeat 1 42 0 1280 56 12 0 chr11 23308890 23309052 -127474501 - L1PA5 LINE L1 -9 6145 5982 470 263 40 13 chr11 23309118 23309270 -127474283 + LTR33 LTR ERVL 366 521 0 1678 174 23 10 chr11 23312152 23312451 -127471102 - AluSx SINE Alu -9 303 1 233 191 16 0 chr11 23312743 23312755 -127470798 + (TA)n Simple_repeat Simple_repeat 2 12 -53 2017 111 18 4 chr11 23312755 23313035 -127470518 + AluSc SINE Alu 1 284 -25 233 191 16 0 chr11 23313035 23313085 -127470468 + (TA)n Simple_repeat Simple_repeat 12 65 0 2293 85 3 0 chr11 23313357 23313651 -127469902 - AluSp SINE Alu 0 313 19 325 126 23 35 chr11 23314359 23314446 -127469107 + CT-rich Low_complexity Low_complexity 2 87 0 42421 36 22 2 chr11 23314453 23320468 -127463085 - L1PA3 LINE L1 -9 6146 4 1047 54 11 49 chr11 23320474 23320659 -127462894 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 188 278 56 0 chr11 23320904 23320958 -127462595 + MIR SINE MIR 175 231 -31 808 254 154 28 chr11 23321280 23321765 -127461788 + MLT1G LTR MaLR 1 590 0 294 143 0 0 chr11 23321888 23321937 -127461616 + (TCCC)n Simple_repeat Simple_repeat 4 52 0 1531 219 27 0 chr11 23321939 23322236 -127461317 - AluJo SINE Alu -1 311 7 189 294 229 0 chr11 23322871 23322980 -127460573 + L2 LINE L2 3173 3306 -7 1897 194 45 5 chr11 23324689 23325066 -127458487 - MER74C LTR ERVL 0 460 69 2263 108 3 10 chr11 23325569 23325875 -127457678 - AluSx SINE Alu -8 304 1 594 278 54 40 chr11 23325922 23326022 -127457531 + L2 LINE L2 2287 2384 -930 195 42 0 0 chr11 23326022 23326046 -127457507 + (CAAAA)n Simple_repeat Simple_repeat 5 28 0 594 278 54 40 chr11 23326046 23326168 -127457385 + L2 LINE L2 2384 2512 -802 1855 182 8 13 chr11 23326376 23326758 -127456795 + Ricksha DNA DNA 1 489 -1107 523 199 0 15 chr11 23327351 23327487 -127456066 + GA-rich Low_complexity Low_complexity 3 136 0 259 284 0 40 chr11 23327565 23327639 -127455914 + MIR SINE MIR 37 107 -155 180 277 185 0 chr11 23327651 23327716 -127455837 + L2 LINE L2 3147 3223 -49 579 300 48 40 chr11 23327939 23328189 -127455364 - MIR SINE MIR -4 258 7 249 83 0 0 chr11 23328859 23328895 -127454658 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 216 358 55 107 chr11 23328906 23329252 -127454301 - L2 LINE L2 -41 3231 2904 432 200 52 96 chr11 23329407 23329637 -127453916 - MER112 DNA MER1_type -40 220 1 316 286 48 12 chr11 23329974 23330058 -127453495 - L2 LINE L2 0 3272 3186 482 224 17 9 chr11 23330272 23330388 -127453165 + AluJ SINE Alu 1 117 -185 634 171 116 93 chr11 23330388 23330461 -127453092 + AluJb SINE Alu 92 162 -150 1893 158 41 19 chr11 23330461 23330828 -127452725 - THE1C LTR MaLR 0 375 1 634 171 116 93 chr11 23330828 23330970 -127452583 + AluJb SINE Alu 162 312 0 226 329 151 40 chr11 23338764 23338989 -127444564 - MIR SINE MIR -2 260 11 1015 76 0 15 chr11 23341773 23341905 -127441648 + AluSq/x SINE Alu 3 132 -180 340 285 12 1 chr11 23342270 23342366 -127441187 + MIR SINE MIR 17 113 -95 210 91 0 0 chr11 23342367 23342400 -127441153 + (T)n Simple_repeat Simple_repeat 1 33 0 182 310 23 35 chr11 23343265 23343352 -127440201 - MIR SINE MIR -90 172 87 188 271 51 17 chr11 23344010 23344069 -127439484 - MIR SINE MIR -110 152 92 1160 209 32 4 chr11 23344578 23344831 -127438722 + MIR SINE MIR 3 262 0 672 271 68 28 chr11 23344915 23345166 -127438387 + MIR SINE MIR 2 262 0 465 333 146 27 chr11 23345162 23345676 -127437877 - L2 LINE L2 -33 3280 2716 * 622 211 43 37 chr11 23345874 23346035 -127437518 + MIR3 SINE MIR 32 193 -15 22 0 0 0 chr11 23346514 23346536 -127437017 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr11 23347048 23347077 -127436476 + AT_rich Low_complexity Low_complexity 1 29 0 457 277 46 50 chr11 23349206 23349466 -127434087 + MIR SINE MIR 2 260 -2 25 83 0 0 chr11 23350211 23350271 -127433282 + AT_rich Low_complexity Low_complexity 1 60 0 22 0 0 0 chr11 23350344 23350366 -127433187 + AT_rich Low_complexity Low_complexity 1 22 0 1162 124 21 11 chr11 23350987 23351173 -127432380 + AluSc SINE Alu 1 188 -121 302 67 0 0 chr11 23351475 23351544 -127432009 + Alu SINE Alu 256 324 0 * 9020 180 26 17 chr11 23351539 23352403 -127431150 + L1PA16 LINE L1 3289 4144 -2022 1679 180 3 13 chr11 23352403 23352714 -127430839 + AluSx SINE Alu 4 311 -1 9020 180 26 17 chr11 23352714 23354691 -127428862 + L1PA16 LINE L1 4144 6134 -32 180 0 0 0 chr11 23354702 23354722 -127428831 + (TAA)n Simple_repeat Simple_repeat 2 21 0 1550 179 45 22 chr11 23355085 23355443 -127428110 - L1MA7 LINE L1 -9 6282 5917 2585 146 86 7 chr11 23355443 23355990 -127427563 - L1MC1 LINE L1 -8 6325 5652 194 222 9 111 chr11 23357087 23357195 -127426358 + MIR SINE MIR 113 209 -53 199 359 0 26 chr11 23357265 23357343 -127426210 - L2 LINE L2 -9 3263 3188 770 178 156 22 chr11 23357618 23357798 -127425755 - MER3 DNA MER1_type -1 208 5 259 311 52 57 chr11 23357965 23358158 -127425395 - MIR SINE MIR -43 219 28 432 294 91 7 chr11 23360269 23360545 -127423008 - L1MC4a LINE L1 -1928 5880 5582 1515 206 21 4 chr11 23361482 23361763 -127421790 - AluJb SINE Alu -25 287 2 36 70 0 0 chr11 23364568 23364639 -127418914 + AT_rich Low_complexity Low_complexity 1 71 0 21 0 0 0 chr11 23364911 23364932 -127418621 + AT_rich Low_complexity Low_complexity 1 21 0 412 352 39 6 chr11 23365845 23366024 -127417529 + L1ME LINE L1 5486 5670 -451 2360 78 3 0 chr11 23367644 23367951 -127415602 + AluY SINE Alu 1 308 -3 32 26 0 0 chr11 23368299 23368338 -127415215 + AT_rich Low_complexity Low_complexity 1 39 0 229 398 0 9 chr11 23370052 23370160 -127413393 - MIR SINE MIR -134 128 22 414 57 0 0 chr11 23370822 23370875 -127412678 + (CAT)n Simple_repeat Simple_repeat 2 54 0 461 274 170 0 chr11 23370990 23371143 -127412410 - MER5A DNA MER1_type 0 189 11 23 0 0 0 chr11 23371368 23371391 -127412162 + AT_rich Low_complexity Low_complexity 1 23 0 21 57 0 0 chr11 23372634 23372669 -127410884 + AT_rich Low_complexity Low_complexity 1 35 0 406 297 117 36 chr11 23372672 23372894 -127410659 - MIR SINE MIR -15 247 8 186 43 0 0 chr11 23373273 23373296 -127410257 + (T)n Simple_repeat Simple_repeat 1 23 0 231 338 15 0 chr11 23378112 23378180 -127405373 - MIR SINE MIR -108 100 32 216 300 75 25 chr11 23378433 23378553 -127405000 - MIR SINE MIR -27 235 110 186 269 77 13 chr11 23378654 23378732 -127404821 - MIR SINE MIR -84 178 96 7408 211 113 19 chr11 23378753 23380913 -127402640 + L1PA16 LINE L1 3071 5440 -726 1417 179 10 51 chr11 23380913 23381232 -127402321 + AluJb SINE Alu 1 307 0 4095 124 29 3 chr11 23381237 23381888 -127401665 + L1PA16 LINE L1 5490 6157 -9 24 0 0 0 chr11 23381888 23381912 -127401641 + AT_rich Low_complexity Low_complexity 1 24 0 287 295 187 22 chr11 23383218 23383357 -127400196 + MIR3 SINE MIR 38 199 -9 22 0 0 0 chr11 23385038 23385060 -127398493 + AT_rich Low_complexity Low_complexity 1 22 0 203 313 83 62 chr11 23385869 23386061 -127397492 + L2 LINE L2 1817 2012 -1302 309 250 73 98 chr11 23387142 23387306 -127396247 - MER103 DNA DNA -4 162 3 230 260 0 21 chr11 23387666 23387762 -127395791 + GA-rich Low_complexity Low_complexity 2 95 0 191 35 0 35 chr11 23391322 23391351 -127392202 + (GAAAA)n Simple_repeat Simple_repeat 3 30 0 2409 91 3 0 chr11 23393658 23393966 -127389587 + AluSp SINE Alu 2 310 -3 1461 133 26 89 chr11 23395043 23395313 -127388240 - AluSx SINE Alu -53 259 7 998 184 27 11 chr11 23395327 23395512 -127388041 + MER5A DNA MER1_type 1 188 -1 567 314 63 10 chr11 23396725 23396932 -127386621 - MIR SINE MIR -43 219 2 361 221 39 10 chr11 23396936 23397040 -127386513 + MER103 DNA DNA 58 164 -2 252 333 61 50 chr11 23397335 23397515 -127386038 - MIR SINE MIR -32 230 49 330 26 0 0 chr11 23398649 23398688 -127384865 + (CA)n Simple_repeat Simple_repeat 1 39 0 28 29 0 0 chr11 23399195 23399230 -127384323 + AT_rich Low_complexity Low_complexity 1 35 0 2195 76 0 7 chr11 23399309 23399597 -127383956 + AluY SINE Alu 4 289 -22 191 167 24 0 chr11 23400203 23400245 -127383308 + (TATATG)n Simple_repeat Simple_repeat 2 44 0 4069 221 19 5 chr11 23400565 23401525 -127382028 + L1 LINE L1 2321 3293 -2853 2341 85 7 0 chr11 23401539 23401833 -127381720 + AluY SINE Alu 4 299 -12 2109 156 48 16 chr11 23401838 23402217 -127381336 - MSTB LTR MaLR -35 391 1 231 143 0 48 chr11 23402321 23402363 -127381190 + Charlie8 DNA MER1_type 309 348 -2069 312 294 78 10 chr11 23402365 23402467 -127381086 - MIR SINE MIR -148 114 6 200 348 7 58 chr11 23403171 23403309 -127380244 - MIR SINE MIR -61 201 71 26 64 0 0 chr11 23403316 23403363 -127380190 + AT_rich Low_complexity Low_complexity 1 47 0 21 0 0 0 chr11 23405611 23405632 -127377921 + AT_rich Low_complexity Low_complexity 1 21 0 333 80 0 0 chr11 23405935 23405985 -127377568 - MADE1 DNA Mariner 0 80 31 2385 125 3 5 chr11 23405987 23406363 -127377190 + L1PA10 LINE L1 5793 6167 -1 24 32 0 0 chr11 23407640 23407671 -127375882 + AT_rich Low_complexity Low_complexity 1 31 0 1745 53 0 0 chr11 23409427 23409636 -127373917 - AluY SINE Alu -8 303 95 2350 91 0 0 chr11 23410034 23410331 -127373222 - AluSq SINE Alu -16 297 1 294 309 13 81 chr11 23410842 23410991 -127372562 - L2 LINE L2 -217 3055 2917 360 298 114 30 chr11 23411038 23411300 -127372253 - L2 LINE L2 -387 2927 2644 244 250 100 0 chr11 23412156 23412216 -127371337 - L2 LINE L2 -25 3288 3223 668 213 161 29 chr11 23412267 23412441 -127371112 - MER58A DNA MER1_type -27 197 1 256 313 0 0 chr11 23413466 23413530 -127370023 - L2 LINE L2 -4 3309 3246 242 327 114 53 chr11 23413694 23414107 -127369446 - L2 LINE L2 -417 2897 2460 310 298 123 9 chr11 23414196 23414310 -127369243 + MIR SINE MIR 48 174 -88 535 301 145 44 chr11 23414312 23414678 -127368875 - L2 LINE L2 -18 3295 2893 214 191 0 0 chr11 23415076 23415118 -127368435 + T-rich Low_complexity Low_complexity 1 42 0 2290 107 0 3 chr11 23415453 23415761 -127367792 + AluSq SINE Alu 1 307 -6 192 281 0 112 chr11 23416053 23416142 -127367411 + L2 LINE L2 3231 3309 -4 1911 110 11 4 chr11 23416254 23416518 -127367035 + AluSc SINE Alu 1 266 -43 373 141 28 14 chr11 23416542 23416613 -127366940 + Alu SINE Alu 228 299 -1 739 259 5 0 chr11 23468236 23468441 -127315112 - L1P LINE L1 -860 5286 5081 1396 73 10 21 chr11 23468445 23468637 -127314916 + MER50-int LTR ERV1 700 889 -6316 2161 208 28 6 chr11 23468637 23469143 -127314410 - L1P LINE L1 -1057 5089 4573 234 265 108 20 chr11 23469365 23469467 -127314086 + MIR SINE MIR 60 170 -92 302 355 14 7 chr11 23469526 23469667 -127313886 - L3 LINE CR1 -380 1197 1056 312 255 147 34 chr11 23471821 23471942 -127311611 - MER5B DNA MER1_type -4 185 38 374 252 122 48 chr11 23472134 23472281 -127311272 + MIR SINE MIR 57 214 -48 233 287 19 37 chr11 23472327 23472435 -127311118 + (CATATA)n Simple_repeat Simple_repeat 2 107 0 189 107 0 0 chr11 23472499 23472527 -127311026 + (A)n Simple_repeat Simple_repeat 1 28 0 761 190 95 62 chr11 23473270 23473481 -127310072 - MER20 DNA MER1_type -1 218 1 21 0 0 0 chr11 23473520 23473541 -127310012 + AT_rich Low_complexity Low_complexity 1 21 0 465 298 24 67 chr11 23473639 23473900 -127309653 + MIR SINE MIR 14 262 0 267 286 43 0 chr11 23473895 23473965 -127309588 - L2 LINE L2 -6 3266 3194 * 24 0 0 0 chr11 23474013 23474037 -127309516 + AT_rich Low_complexity Low_complexity 1 24 0 207 0 0 0 chr11 23474205 23474228 -127309325 + (TA)n Simple_repeat Simple_repeat 1 23 0 * 372 22 0 0 chr11 23474227 23474272 -127309281 + (CA)n Simple_repeat Simple_repeat 2 46 0 242 158 24 73 chr11 23474277 23474359 -127309194 + L1MC4 LINE L1 6626 6703 -1339 2427 65 0 13 chr11 23474378 23474688 -127308865 - AluY SINE Alu -5 306 1 466 34 0 0 chr11 23475233 23475292 -127308261 + L1PA6 LINE L1 6091 6149 -5 199 301 90 38 chr11 23475320 23475453 -127308100 + L2 LINE L2 2909 3048 -224 270 68 45 0 chr11 23475514 23475558 -127307995 - AluSc SINE Alu -1 298 253 1019 87 0 0 chr11 23475559 23475686 -127307867 - AluSq/x SINE Alu -186 127 1 22 70 0 0 chr11 23475733 23475776 -127307777 + AT_rich Low_complexity Low_complexity 1 43 0 2123 127 3 13 chr11 23477916 23478230 -127305323 + AluSq SINE Alu 1 311 -2 914 216 76 113 chr11 23479140 23479625 -127303928 - HAL1 LINE L1 0 2507 2041 366 292 17 25 chr11 23479894 23480014 -127303539 - L2 LINE L2 0 3313 3195 661 201 50 22 chr11 23480036 23480215 -127303338 - MER53 DNA DNA -5 184 1 1328 308 42 19 chr11 23480252 23480875 -127302678 - L2 LINE L2 -151 3162 2530 456 289 103 64 chr11 23480995 23481451 -127302102 - HAL1 LINE L1 -1987 520 47 194 301 97 39 chr11 23482512 23482615 -127300938 + MIR SINE MIR 81 189 -73 532 315 55 5 chr11 23482934 23483134 -127300419 + MIR SINE MIR 4 213 -49 503 249 83 12 chr11 23483200 23483369 -127300184 - MIR SINE MIR -15 247 67 201 300 0 0 chr11 23484381 23484431 -127299122 + CT-rich Low_complexity Low_complexity 2 51 0 270 317 50 10 chr11 23484727 23484828 -127298725 - L2 LINE L2 0 3272 3168 183 80 0 0 chr11 23484823 23484848 -127298705 + L2 LINE L2 3283 3307 -6 * 256 234 0 0 chr11 23485014 23485061 -127298492 + MER91 DNA MER1_type 94 140 0 21 0 0 0 chr11 23486374 23486395 -127297158 + AT_rich Low_complexity Low_complexity 1 21 0 2251 58 6 37 chr11 23487067 23487392 -127296161 + L1PA5 LINE L1 5840 6154 0 1687 173 65 0 chr11 23487690 23488014 -127295539 + MER7A DNA MER2_type 2 344 -2 434 280 3 0 chr11 23488464 23488582 -127294971 + MIR SINE MIR 50 145 -63 269 355 74 32 chr11 23489028 23489526 -127294027 - L2 LINE L2 -1037 2277 1759 4189 166 5 34 chr11 23490155 23490545 -127293008 - L1MA8 LINE L1 -2 6289 5889 3384 98 46 60 chr11 23490545 23491107 -127292446 - MER41A LTR ERV1 0 554 1 4189 166 5 34 chr11 23491107 23491548 -127292005 - L1MA8 LINE L1 -402 5889 5482 3020 137 18 2 chr11 23492511 23493000 -127290553 - LOR1a LTR ERV1 0 497 1 1646 174 166 39 chr11 23494049 23494402 -127289151 - LOR1b LTR ERV1 0 461 47 2129 104 0 21 chr11 23494402 23494717 -127288836 - AluSx SINE Alu 0 309 1 1646 174 166 39 chr11 23494717 23494771 -127288782 - LOR1b LTR ERV1 -414 47 1 3316 124 12 2 chr11 23494936 23495428 -127288125 - LOR1a LTR ERV1 0 497 1 22 35 0 0 chr11 23498408 23498437 -127285116 + AT_rich Low_complexity Low_complexity 1 29 0 1632 230 74 18 chr11 23498681 23499138 -127284415 - MLT1D LTR MaLR -2 503 21 234 339 129 54 chr11 23499606 23499978 -127283575 + L3 LINE CR1 1134 1533 -44 239 292 0 28 chr11 23500195 23500267 -127283286 - MIR SINE MIR -57 151 82 230 261 87 0 chr11 23500363 23500432 -127283121 - MIR3 SINE MIR -11 197 123 992 222 104 28 chr11 23500669 23501041 -127282512 - L1ME LINE L1 -545 5621 5230 212 128 0 21 chr11 23501081 23501128 -127282425 + (CCCCCT)n Simple_repeat Simple_repeat 2 47 0 1984 124 28 3 chr11 23501156 23501438 -127282115 - AluSx SINE Alu -23 289 1 1567 216 118 14 chr11 23501449 23501888 -127281665 - L1ME LINE L1 -957 5189 4705 5111 174 124 13 chr11 23501916 23503692 -127279861 - L1PA16 LINE L1 -9 6157 4114 904 234 190 5 chr11 23503681 23504087 -127279466 - L1ME LINE L1 -1434 4712 4232 * 2326 91 3 3 chr11 23504413 23504721 -127278832 + AluSp SINE Alu 1 308 -5 186 133 0 0 chr11 23505954 23505984 -127277569 + (TG)n Simple_repeat Simple_repeat 2 31 0 283 96 39 0 chr11 23506022 23506074 -127277479 + (TA)n Simple_repeat Simple_repeat 1 54 0 1833 170 49 95 chr11 23508292 23508664 -127274889 + MER70A LTR ERVL 37 386 -86 1447 168 24 54 chr11 23508664 23508962 -127274591 - AluJb SINE Alu -23 289 1 1833 170 49 95 chr11 23508962 23509041 -127274512 + MER70A LTR ERVL 386 467 -5 180 77 0 0 chr11 23509085 23509111 -127274442 + (CAAAA)n Simple_repeat Simple_repeat 5 30 0 298 185 65 0 chr11 23509339 23509431 -127274122 + L1MC4 LINE L1 6606 6703 -1339 242 226 0 47 chr11 23509351 23509457 -127274096 - L1MC4 LINE L1 -1339 6703 6603 * 424 253 88 47 chr11 23509670 23509840 -127273713 + MER5B DNA MER1_type 2 178 0 225 178 0 0 chr11 23511244 23511289 -127272264 + (TATATG)n Simple_repeat Simple_repeat 6 50 0 239 315 14 27 chr11 23511502 23511575 -127271978 + L2 LINE L2 3188 3259 -54 21 71 0 0 chr11 23511889 23511931 -127271622 + AT_rich Low_complexity Low_complexity 1 42 0 24 0 0 0 chr11 23512557 23512581 -127270972 + AT_rich Low_complexity Low_complexity 1 24 0 25 65 0 0 chr11 23512811 23512857 -127270696 + AT_rich Low_complexity Low_complexity 1 46 0 349 286 196 28 chr11 23513310 23513565 -127269988 - L2 LINE L2 -52 3261 2964 595 220 0 0 chr11 23513893 23514034 -127269519 + MER53 DNA DNA 37 177 -12 228 224 41 31 chr11 23514755 23514853 -127268700 + (CCCCG)n Simple_repeat Simple_repeat 1 99 0 417 308 182 0 chr11 23515396 23515539 -127268014 - MER5A DNA MER1_type -6 183 15 216 0 0 0 chr11 23515545 23515569 -127267984 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 538 241 102 81 chr11 23515687 23516031 -127267522 - L1ME1 LINE L1 -2 6164 5814 456 207 62 35 chr11 23516087 23516232 -127267321 + MER67C LTR ERV1 3 151 -559 1831 137 32 0 chr11 23516241 23516525 -127267028 + AluSx SINE Alu 1 293 -19 297 51 0 0 chr11 23516525 23516564 -127266989 + (GGGGA)n Simple_repeat Simple_repeat 4 42 0 389 240 133 31 chr11 23516603 23516799 -127266754 + MER67C LTR ERV1 161 376 -334 778 153 79 16 chr11 23516820 23517009 -127266544 + MER67C LTR ERV1 498 698 -12 2095 150 51 27 chr11 23517258 23517671 -127265882 + MER44D DNA MER2_type 50 527 -78 1803 193 92 57 chr11 23517675 23518167 -127265386 + MER67D LTR ERV1 1 509 -5 858 276 46 81 chr11 23518177 23518505 -127265048 - L1ME1 LINE L1 -63 6103 5765 699 192 0 0 chr11 23518505 23518635 -127264918 + FLAM_A SINE Alu 4 133 0 1219 218 57 7 chr11 23518637 23518917 -127264636 + AluJb SINE Alu 1 294 -18 858 276 46 81 chr11 23518917 23519106 -127264447 - L1ME1 LINE L1 -402 5764 5601 4630 124 54 4 chr11 23519110 23519852 -127263701 + MER4E LTR ERV1 1 779 0 2368 108 11 11 chr11 23519852 23520204 -127263349 + MER4E-int LTR ERV1 1 352 -6406 1303 94 57 66 chr11 23520214 23520255 -127263298 + MER4E-int LTR ERV1 714 754 -6004 2511 47 0 0 chr11 23520255 23520551 -127263002 + AluY SINE Alu 1 296 -15 1303 94 57 66 chr11 23520551 23520903 -127262650 + MER4E-int LTR ERV1 754 1158 -5600 201 74 0 0 chr11 23520908 23520935 -127262618 + (TATG)n Simple_repeat Simple_repeat 2 28 0 2476 121 105 42 chr11 23520952 23521497 -127262056 + MER4E-int LTR ERV1 1766 2344 -4254 1734 167 56 7 chr11 23521491 23521797 -127261756 + MER4B-int LTR ERV1 3767 4087 -2671 * 9676 129 83 31 chr11 23521798 23523561 -127259992 + MER4B-int LTR ERV1 4453 6307 -451 318 80 0 0 chr11 23523561 23523611 -127259942 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 1409 128 80 24 chr11 23523620 23523728 -127259825 + MER4B-int LTR ERV1 6381 6482 -276 198 0 0 0 chr11 23523728 23523750 -127259803 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 1409 128 80 24 chr11 23523750 23523891 -127259662 + MER4B-int LTR ERV1 6482 6644 -114 258 56 0 0 chr11 23523891 23523927 -127259626 + (CAA)n Simple_repeat Simple_repeat 3 38 0 4808 167 28 3 chr11 23524350 23525199 -127258354 - Tigger1 DNA MER2_type -1547 871 2 2143 253 76 16 chr11 23525211 23526093 -127257460 + L1M4 LINE L1 2264 3092 -3054 294 29 0 0 chr11 23526093 23526128 -127257425 + (TA)n Simple_repeat Simple_repeat 1 35 0 2245 112 7 0 chr11 23526128 23526432 -127257121 - AluSc SINE Alu -3 306 1 2143 253 76 16 chr11 23526432 23526522 -127257031 + L1M4 LINE L1 3091 3295 -2851 207 129 43 21 chr11 23526584 23526677 -127256876 + (TA)n Simple_repeat Simple_repeat 1 95 0 547 276 26 0 chr11 23526681 23526837 -127256716 + L1M4 LINE L1 3485 3644 -2502 620 254 51 83 chr11 23526838 23527318 -127256235 - MER74A LTR ERVL -1 557 21 398 167 39 0 chr11 23527318 23527396 -127256157 + L1MA5 LINE L1 6220 6300 0 357 295 77 19 chr11 23527711 23527867 -127255686 - L1MEc LINE L1 -4891 1326 1162 1608 112 0 9 chr11 23527874 23528106 -127255447 + THE1B LTR MaLR 1 230 -134 1051 128 19 0 chr11 23528135 23528146 -127255407 + THE1B LTR MaLR 206 215 -149 1742 153 28 21 chr11 23528146 23528433 -127255120 + AluSx SINE Alu 11 299 -13 1051 128 19 0 chr11 23528433 23528577 -127254976 + THE1B LTR MaLR 215 364 0 9920 129 41 3 chr11 23528577 23530099 -127253454 + THE1B-int LTR MaLR 1 1580 0 2170 148 25 8 chr11 23530099 23530457 -127253096 + THE1B LTR MaLR 1 364 0 1380 283 81 60 chr11 23530483 23531619 -127251934 - L1MEc LINE L1 -4996 1250 107 23 0 0 0 chr11 23532476 23532499 -127251054 + AT_rich Low_complexity Low_complexity 1 23 0 2176 124 0 0 chr11 23533085 23533384 -127250169 + AluSx SINE Alu 1 299 -13 303 277 101 0 chr11 23533706 23533825 -127249728 + MER5C DNA MER1_type 1 131 -193 3196 142 14 11 chr11 23534446 23534681 -127248872 - L1PB1 LINE L1 -3 6148 5915 3462 130 71 14 chr11 23534681 23535259 -127248294 - LTR9 LTR ERV1 -1 611 1 3196 142 14 11 chr11 23535259 23535573 -127247980 - L1PB1 LINE L1 -236 5915 5597 333 0 0 0 chr11 23535864 23535901 -127247652 + (TA)n Simple_repeat Simple_repeat 1 37 0 919 83 0 0 chr11 23535901 23536022 -127247531 - AluY SINE Alu -4 307 187 9115 234 59 42 chr11 23536468 23537097 -127246456 + L1ME3 LINE L1 1 617 -5947 3120 139 85 57 chr11 23537097 23537803 -127245750 + LTR8A LTR ERV1 2 727 0 9115 234 59 42 chr11 23537803 23542554 -127240999 + L1ME3 LINE L1 617 5528 -1036 183 386 11 11 chr11 23542556 23542644 -127240909 - MIR SINE MIR -155 107 20 739 291 62 26 chr11 23543546 23543935 -127239618 + L1ME3 LINE L1 5963 6365 -215 1828 121 19 59 chr11 23545907 23546229 -127237324 - AluSx SINE Alu -3 309 1 487 303 100 17 chr11 23546409 23546640 -127236913 - MIR SINE MIR -10 252 3 335 321 42 38 chr11 23547867 23548079 -127235474 + MIR SINE MIR 50 262 0 207 304 18 0 chr11 23548104 23548160 -127235393 - L3 LINE CR1 -11 1566 1510 336 335 139 14 chr11 23548215 23548424 -127235129 - L3 LINE CR1 -75 1502 1268 534 241 190 128 chr11 23548429 23548775 -127234778 - LTR50 LTR ERVL -212 583 189 255 61 0 0 chr11 23548775 23548808 -127234745 + (CAAA)n Simple_repeat Simple_repeat 3 35 0 534 241 190 128 chr11 23548808 23549009 -127234544 - LTR50 LTR ERVL -606 189 2 1885 197 50 24 chr11 23549056 23549313 -127234240 + MSTB1 LTR MaLR 1 275 -157 2298 86 3 7 chr11 23549313 23549614 -127233939 - AluSc SINE Alu -9 300 1 1885 197 50 24 chr11 23549614 23549777 -127233776 + MSTB1 LTR MaLR 275 432 0 895 246 188 65 chr11 23549887 23550350 -127233203 + MLT2D LTR ERVL 1 520 0 591 220 28 0 chr11 23550644 23550785 -127232768 + MER103 DNA DNA 11 155 -11 4889 169 80 29 chr11 23550864 23551834 -127231719 + LTR28 LTR ERV1 1 1020 0 275 309 31 10 chr11 23552901 23552998 -127230555 - L2 LINE L2 0 3272 3174 586 254 85 12 chr11 23553042 23553207 -127230346 + MER45A DNA AcHobo 1 177 -1 445 71 29 0 chr11 23553234 23553304 -127230249 + (TCTA)n Simple_repeat Simple_repeat 2 73 0 694 353 86 16 chr11 23553386 23553817 -127229736 - L3 LINE CR1 -699 878 418 1960 147 17 0 chr11 23553919 23554218 -127229335 + AluSx SINE Alu 1 304 -8 1218 198 180 49 chr11 23554302 23554747 -127228806 - MLT1D LTR MaLR 0 505 3 301 100 0 0 chr11 23555031 23555071 -127228482 - AluJ/FLAM SINE Alu -203 99 60 1071 189 44 22 chr11 23555071 23555299 -127228254 + AluJb SINE Alu 71 303 -9 1640 143 68 0 chr11 23556679 23556989 -127226564 - AluSx SINE Alu 0 328 1 21 0 0 0 chr11 23557146 23557167 -127226386 + AT_rich Low_complexity Low_complexity 1 21 0 1144 171 22 0 chr11 23559802 23560030 -127223523 + L1MA4 LINE L1 6062 6294 -6 23 33 0 0 chr11 23560839 23560869 -127222684 + AT_rich Low_complexity Low_complexity 1 30 0 285 359 63 30 chr11 23561799 23562036 -127221517 + L2 LINE L2 2618 2862 -452 181 229 57 57 chr11 23562084 23562154 -127221399 + L2 LINE L2 3185 3254 -59 358 315 142 0 chr11 23562380 23562542 -127221011 + L3 LINE CR1 1385 1569 -8 714 231 31 12 chr11 23563165 23563325 -127220228 - FRAM SINE Alu -21 155 1 429 315 52 24 chr11 23563390 23563641 -127219912 + L1MC4a LINE L1 5679 5936 -1872 556 49 12 12 chr11 23565126 23565207 -127218346 + (TCTA)n Simple_repeat Simple_repeat 4 84 0 366 211 62 31 chr11 23565499 23565627 -127217926 - L1ME4a LINE L1 -223 5898 5767 353 171 14 14 chr11 23565680 23565750 -127217803 - MLT1K LTR MaLR 0 588 519 502 211 18 9 chr11 23565887 23565996 -127217557 - MER81 DNA DNA -2 112 3 2391 100 0 0 chr11 23566146 23566456 -127217097 + AluSg SINE Alu 1 310 0 300 291 8 68 chr11 23566982 23567099 -127216454 + L2 LINE L2 3141 3250 -22 29 47 0 0 chr11 23567750 23567793 -127215760 + AT_rich Low_complexity Low_complexity 1 43 0 1987 133 33 0 chr11 23568045 23568173 -127215380 + AluSx SINE Alu 1 123 -189 216 0 0 0 chr11 23568173 23568197 -127215356 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 1987 133 33 0 chr11 23568197 23568370 -127215183 + AluSx SINE Alu 123 312 0 1966 121 0 0 chr11 23568475 23568747 -127214806 - AluSx SINE Alu -17 295 24 253 363 159 0 chr11 23568860 23568973 -127214580 + MIR3 SINE MIR 30 160 -48 1776 171 22 39 chr11 23569783 23570146 -127213407 + L1MDa LINE L1 6 362 -6178 1226 264 19 28 chr11 23570150 23570620 -127212933 + L1 LINE L1 2367 2832 -3314 1532 237 11 25 chr11 23570632 23570990 -127212563 - MLT1A1 LTR MaLR -12 353 1 2638 270 84 87 chr11 23571000 23573339 -127210214 + L1 LINE L1 2839 5169 -977 224 308 83 8 chr11 23573919 23574039 -127209514 + L2 LINE L2 3183 3311 -2 830 88 0 16 chr11 23574305 23574430 -127209123 - L1PB1 LINE L1 0 6151 6029 635 289 161 23 chr11 23575873 23576215 -127207338 + MLT1L LTR MaLR 225 613 -2 2303 114 0 0 chr11 23576731 23577037 -127206516 + AluSg SINE Alu 3 308 -2 1009 298 57 61 chr11 23577569 23578075 -127205478 - LTR67 LTR ERVL 0 557 54 712 174 55 119 chr11 23578081 23578282 -127205271 + MER20 DNA MER1_type 32 219 0 2270 178 14 14 chr11 23578444 23578870 -127204683 - MSTB LTR MaLR 0 426 1 182 345 55 9 chr11 23578892 23579002 -127204551 - MIR SINE MIR -147 115 1 281 287 19 46 chr11 23579961 23580069 -127203484 - MIR SINE MIR -60 202 98 225 197 148 0 chr11 23580429 23580490 -127203063 - MLT1H LTR MaLR -48 501 432 301 241 82 72 chr11 23580583 23580647 -127202906 - MER112 DNA MER1_type -5 255 193 2435 112 22 3 chr11 23580647 23581004 -127202549 - THE1B LTR MaLR 0 364 1 301 241 82 72 chr11 23581004 23581146 -127202407 - MER112 DNA MER1_type -67 193 47 2211 87 10 7 chr11 23581264 23581564 -127201989 + AluY SINE Alu 1 301 -10 181 297 27 40 chr11 23582477 23582551 -127201002 + MIR SINE MIR 67 139 -69 282 408 83 0 chr11 23582794 23582951 -127200602 - L2 LINE L2 0 3272 3103 189 298 183 0 chr11 23583242 23583346 -127200207 - MIR SINE MIR -11 251 129 663 296 40 8 chr11 23584069 23584319 -127199234 + MIR SINE MIR 2 259 -3 375 31 0 47 chr11 23584343 23584407 -127199146 + (TA)n Simple_repeat Simple_repeat 1 61 0 506 251 44 101 chr11 23584549 23584776 -127198777 - MIR SINE MIR -1 261 48 454 380 10 0 chr11 23585663 23585868 -127197685 - LTR33 LTR ERVL -310 211 5 22 56 0 0 chr11 23587486 23587522 -127196031 + AT_rich Low_complexity Low_complexity 1 36 0 229 277 0 0 chr11 23587526 23587573 -127195980 + MER113 DNA MER1_type? 475 521 0 22 35 0 0 chr11 23587984 23588013 -127195540 + AT_rich Low_complexity Low_complexity 1 29 0 216 135 0 0 chr11 23588098 23588135 -127195418 + (TATG)n Simple_repeat Simple_repeat 1 37 0 295 323 61 23 chr11 23588269 23588464 -127195089 + MLT1J LTR MaLR 319 611 -4 5667 155 9 5 chr11 23588576 23589541 -127194012 - L1MA8 LINE L1 0 6291 5323 274 290 131 51 chr11 23589731 23589907 -127193646 - MIR SINE MIR -6 256 67 292 87 22 0 chr11 23589973 23590019 -127193534 - MADE1 DNA Mariner -33 47 1 1505 304 134 26 chr11 23590024 23590765 -127192788 + L2 LINE L2 1853 2673 -641 747 316 57 60 chr11 23590836 23591272 -127192281 + L2 LINE L2 2875 3309 -4 286 313 27 41 chr11 23591348 23591495 -127192058 - MER5A DNA MER1_type -16 173 29 1299 251 115 50 chr11 23591574 23592115 -127191438 + MLT1E2 LTR MaLR 51 626 0 26 50 0 0 chr11 23592458 23592498 -127191055 + AT_rich Low_complexity Low_complexity 1 40 0 216 339 96 17 chr11 23592591 23592706 -127190847 + MER91C DNA MER1_type 17 140 0 968 247 188 3 chr11 23592773 23593081 -127190472 + MLT1A1 LTR MaLR 1 365 0 2224 102 0 6 chr11 23593103 23593416 -127190137 + AluY SINE Alu 1 311 0 201 381 67 0 chr11 23593470 23593575 -127189978 + MIR3 SINE MIR 87 198 -10 18132 30 2 0 chr11 23593700 23596646 -127186907 + L1PA3 LINE L1 3207 6152 -3 22 35 0 0 chr11 23597458 23597487 -127186066 + AT_rich Low_complexity Low_complexity 1 29 0 771 230 86 19 chr11 23597507 23597716 -127185837 - L1ME1 LINE L1 -6 6160 5938 292 211 0 70 chr11 23597873 23597944 -127185609 - MLT2D LTR ERVL -355 59 1 1701 231 58 21 chr11 23597944 23598560 -127184993 - L1M4 LINE L1 -1278 4868 4230 25 0 0 0 chr11 23599253 23599278 -127184275 + AT_rich Low_complexity Low_complexity 1 25 0 1360 212 51 66 chr11 23599945 23600397 -127183156 - MER65A LTR ERV1 0 445 1 195 42 0 0 chr11 23600482 23600506 -127183047 + (TG)n Simple_repeat Simple_repeat 1 24 0 453 297 61 93 chr11 23600544 23600985 -127182568 - MLT1H LTR MaLR 0 549 123 182 392 0 14 chr11 23601061 23601135 -127182418 + MIR3 SINE MIR 105 177 -31 23 0 0 0 chr11 23601246 23601269 -127182284 + AT_rich Low_complexity Low_complexity 1 23 0 198 0 0 0 chr11 23601892 23601914 -127181639 + (TAAAA)n Simple_repeat Simple_repeat 3 24 0 2286 80 3 0 chr11 23603254 23603542 -127180011 - AluSc SINE Alu -15 294 6 203 227 15 0 chr11 23603550 23603616 -127179937 + CT-rich Low_complexity Low_complexity 2 68 0 600 136 12 206 chr11 23603738 23603981 -127179572 + L1MA9 LINE L1 6117 6312 0 581 313 21 38 chr11 23604407 23604441 -127179112 - L1ME1 LINE L1 -26 6140 6107 5052 88 14 3 chr11 23604441 23605155 -127178398 - LTR30 LTR ERV1 0 722 1 581 313 21 38 chr11 23605155 23605408 -127178145 - L1ME1 LINE L1 -59 6107 5858 890 174 13 0 chr11 23605420 23605569 -127177984 - FRAM SINE Alu -10 166 16 239 263 45 0 chr11 23605602 23605735 -127177818 - L1MDb LINE L1 -4042 2364 2226 * 2244 233 63 49 chr11 23605731 23605950 -127177603 - L1MDb LINE L1 -4552 1854 1640 796 219 46 46 chr11 23605950 23606169 -127177384 - MER20 DNA MER1_type 0 219 1 2244 233 63 49 chr11 23606169 23606697 -127176856 - L1MDb LINE L1 -4766 1640 1121 1941 138 0 0 chr11 23606697 23607000 -127176553 - AluSx SINE Alu 0 303 1 2244 233 63 49 chr11 23607000 23607220 -127176333 - L1MDb LINE L1 -5285 1121 901 621 204 0 36 chr11 23607220 23607357 -127176196 - FLAM_C SINE Alu 0 133 2 2244 233 63 49 chr11 23607357 23607478 -127176075 - L1MDb LINE L1 -5505 901 783 269 369 8 0 chr11 23608220 23608350 -127175203 - L1MDb LINE L1 -5935 461 331 234 280 42 56 chr11 23608641 23608784 -127174769 + MER117 DNA MER1_type 6 146 -51 313 363 62 0 chr11 23609142 23609302 -127174251 + MER20B DNA MER1_type 2 171 -612 1827 245 85 18 chr11 23609383 23610041 -127173512 + Zaphod DNA AcHobo 178 879 -3152 1321 213 40 4 chr11 23611311 23611433 -127172120 + AluJo SINE Alu 1 117 -195 450 0 0 0 chr11 23611433 23611483 -127172070 + (TAAA)n Simple_repeat Simple_repeat 2 51 0 1321 213 40 4 chr11 23611483 23611632 -127171921 + AluJo SINE Alu 117 282 -30 22 70 0 0 chr11 23611994 23612037 -127171516 + AT_rich Low_complexity Low_complexity 1 43 0 7825 85 3 27 chr11 23662493 23663639 -127119914 + L1P LINE L1 3282 4400 -1746 6262 117 8 14 chr11 23663739 23664780 -127118773 + L1P LINE L1 2241 3274 -2872 7183 129 2 30 chr11 23664880 23666060 -127117493 - L1P LINE L1 -4439 1707 561 1889 143 61 28 chr11 23666459 23666822 -127116731 - THE1C LTR MaLR 0 375 1 2239 117 0 0 chr11 23666968 23667266 -127116287 + AluSx SINE Alu 1 298 -14 32 26 0 0 chr11 23667276 23667315 -127116238 + AT_rich Low_complexity Low_complexity 1 39 0 894 193 13 25 chr11 23668943 23669182 -127114371 + L1P LINE L1 5127 5362 -784 2233 52 0 0 chr11 23669213 23669480 -127114073 - AluY SINE Alu -44 267 1 903 76 0 0 chr11 23669878 23669997 -127113556 - AluSp/q SINE Alu -1 312 194 347 298 161 18 chr11 23670250 23670468 -127113085 - MIR SINE MIR -12 250 2 4139 241 58 12 chr11 23671251 23672510 -127111043 - L1M4 LINE L1 -1827 4319 3003 2817 13 0 0 chr11 23672633 23672943 -127110610 + AluYa5 SINE Alu 1 310 -1 2544 52 0 10 chr11 23672992 23673300 -127110253 + AluY SINE Alu 1 305 -6 273 29 0 0 chr11 23674665 23674699 -127108854 + (TG)n Simple_repeat Simple_repeat 2 35 0 913 177 79 10 chr11 23675149 23675352 -127108201 + MER20 DNA MER1_type 1 217 -2 2424 172 21 34 chr11 23675621 23676091 -127107462 - L1MCa LINE L1 -5943 483 20 231 275 14 0 chr11 23677098 23677167 -127106386 + MIR3 SINE MIR 126 195 -13 2141 108 3 10 chr11 23677503 23677808 -127105745 + AluSp SINE Alu 1 303 -10 252 312 136 40 chr11 23678295 23678380 -127105173 + MIR3 SINE MIR 48 150 -58 2293 188 48 30 chr11 23678380 23678876 -127104677 - MLT1D LTR MaLR 0 505 1 252 312 136 40 chr11 23678876 23678915 -127104638 + MIR3 SINE MIR 150 184 -24 288 204 0 19 chr11 23679943 23679997 -127103556 + FLAM_A SINE Alu 67 119 -14 21 0 0 0 chr11 23680059 23680080 -127103473 + AT_rich Low_complexity Low_complexity 1 21 0 2123 108 7 0 chr11 23680273 23680570 -127102983 - AluSq SINE Alu -1 312 14 2856 65 35 5 chr11 23680638 23681036 -127102517 + L1PA8 LINE L1 5763 6172 0 213 308 31 0 chr11 23681196 23681261 -127102292 - MIR3 SINE MIR -19 189 123 13632 123 20 9 chr11 23683044 23685143 -127098410 - Tigger1 DNA MER2_type 0 2418 298 2426 72 0 86 chr11 23685243 23685662 -127097891 - L1P LINE L1 -3638 2508 2126 * 7810 133 11 28 chr11 23685643 23686982 -127096571 - L1P LINE L1 -3869 2277 962 469 286 40 29 chr11 23687186 23687361 -127096192 - MIR SINE MIR -79 183 7 14805 70 8 14 chr11 23689306 23691319 -127092234 + L1P LINE L1 3249 5248 -898 391 301 85 22 chr11 23691424 23691579 -127091974 - MIR SINE MIR -69 139 30 24 111 0 0 chr11 23692074 23692182 -127091371 + AT_rich Low_complexity Low_complexity 1 108 0 444 274 157 24 chr11 23692712 23692967 -127090586 + L3 LINE CR1 423 711 -866 391 165 0 143 chr11 23693646 23693779 -127089774 - Charlie7 DNA MER1_type -2 2610 2497 1220 244 102 8 chr11 23695146 23695528 -127088025 + LTR52 LTR ERVL 1 418 -3 4014 128 47 69 chr11 23695539 23696341 -127087212 + LTR1 LTR ERV1 1 785 0 313 231 68 116 chr11 23696348 23696495 -127087058 + L2 LINE L2 3169 3308 -5 2301 143 78 5 chr11 23696640 23697039 -127086514 - MSTA LTR MaLR 0 428 1 3365 61 0 0 chr11 23698918 23699343 -127084210 - L1PA5 LINE L1 -11 6143 5719 4681 219 31 21 chr11 23699807 23701567 -127081986 + L1PA15-16 LINE L1 2077 3838 -3011 883 216 4 4 chr11 23701534 23701766 -127081787 + L1MA4 LINE L1 3971 4202 -2647 * 10924 159 19 14 chr11 23701885 23703911 -127079642 + L1P LINE L1 1531 3565 -2581 5390 166 26 14 chr11 23704011 23705740 -127077813 + L1MA4 LINE L1 5248 6997 -6 2020 127 0 26 chr11 23705750 23706058 -127077495 + AluSx SINE Alu 1 300 -12 2250 75 4 0 chr11 23706075 23706356 -127077197 + AluY SINE Alu 1 322 0 306 0 50 0 chr11 23706356 23706396 -127077157 + (TAAA)n Simple_repeat Simple_repeat 2 180 0 239 326 52 7 chr11 23707481 23707616 -127075937 + L1M4 LINE L1 3770 3910 -2236 24 0 0 0 chr11 23707641 23707665 -127075888 + AT_rich Low_complexity Low_complexity 1 24 0 305 379 37 23 chr11 23707793 23708007 -127075546 - MLT1I LTR MaLR -130 279 63 22 0 0 0 chr11 23708190 23708212 -127075341 + AT_rich Low_complexity Low_complexity 1 22 0 1691 168 90 13 chr11 23708303 23708613 -127074940 - MER1B DNA MER1_type 0 337 4 399 320 63 17 chr11 23710023 23710198 -127073355 - MLT2F LTR ERVL -480 183 1 710 255 81 67 chr11 23710201 23710365 -127073188 - ERVL-F LTR ERVL -13 5751 5591 2118 82 10 17 chr11 23710365 23710659 -127072894 - AluY SINE Alu -19 292 1 710 255 81 67 chr11 23710659 23710929 -127072624 - ERVL-F LTR ERVL -173 5591 5311 1865 137 70 6 chr11 23710963 23711276 -127072277 + MER1B DNA MER1_type 3 335 -2 2750 283 56 12 chr11 23711277 23712105 -127071448 - ERVL-F LTR ERVL -541 5223 4360 5877 113 71 0 chr11 23712302 23713243 -127070310 - L1PA10 LINE L1 0 6168 5207 28 0 0 0 chr11 23713337 23713365 -127070188 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr11 23713384 23713412 -127070141 + AT_rich Low_complexity Low_complexity 1 28 0 1664 191 30 64 chr11 23713485 23713889 -127069664 + MLT1B LTR MaLR 1 390 0 184 293 0 35 chr11 23714376 23714434 -127069119 - L2 LINE L2 -2 3270 3215 214 308 0 0 chr11 23715334 23715386 -127068167 - L2 LINE L2 -5 3267 3216 1996 97 17 24 chr11 23715702 23715990 -127067563 + AluSc SINE Alu 3 288 -21 192 343 36 58 chr11 23716305 23716442 -127067111 + L2 LINE L2 3180 3313 0 26 0 0 0 chr11 23717060 23717086 -127066467 + AT_rich Low_complexity Low_complexity 1 26 0 397 321 38 13 chr11 23717803 23717962 -127065591 + MIR SINE MIR 7 169 -93 196 258 48 65 chr11 23717999 23718061 -127065492 + L2 LINE L2 3191 3251 -21 482 0 0 17 chr11 23718062 23718121 -127065432 + (TAGA)n Simple_repeat Simple_repeat 2 59 0 363 236 0 56 chr11 23718207 23718296 -127065257 + L2 LINE L2 3189 3272 0 560 246 34 0 chr11 23718513 23718631 -127064922 - L1M4b LINE L1 -6727 132 11 2025 129 3 0 chr11 23718927 23719213 -127064340 - AluSx SINE Alu -20 292 6 762 187 6 24 chr11 23719700 23719866 -127063687 - L1MA7 LINE L1 -64 6227 6065 509 159 28 0 chr11 23720149 23720256 -127063297 + L1MB8 LINE L1 6069 6178 0 180 319 0 0 chr11 23720516 23720563 -127062990 - L2 LINE L2 -23 3290 3244 2113 115 0 0 chr11 23720785 23721072 -127062481 + AluSg SINE Alu 1 287 -23 2066 127 0 19 chr11 23721209 23721517 -127062036 - AluSp SINE Alu -11 302 1 186 424 0 0 chr11 23721530 23721615 -127061938 - L2 LINE L2 -1 3271 3187 739 42 0 10 chr11 23722049 23722145 -127061408 + L1P2 LINE L1 5593 5687 -468 3054 198 15 52 chr11 23722222 23723091 -127060462 + LTR5 LTR ERVK 133 969 0 2506 127 5 16 chr11 23723091 23723470 -127060083 + MER1A DNA MER1_type 53 427 -102 492 322 58 6 chr11 23723576 23723747 -127059806 + MIR SINE MIR 24 203 -59 224 167 21 0 chr11 23723747 23723795 -127059758 + (TG)n Simple_repeat Simple_repeat 1 49 0 239 273 11 0 chr11 23723795 23723883 -127059670 + L1MC4 LINE L1 6615 6703 -1339 285 102 51 0 chr11 23723890 23723949 -127059604 + (TA)n Simple_repeat Simple_repeat 1 62 0 302 333 69 6 chr11 23724514 23724673 -127058880 - MIR SINE MIR -10 252 84 265 295 57 25 chr11 23724947 23725069 -127058484 + L1M4 LINE L1 4808 4933 -1213 23 54 0 0 chr11 23725120 23725157 -127058396 + AT_rich Low_complexity Low_complexity 1 37 0 621 310 101 42 chr11 23725199 23725751 -127057802 - L1MEc LINE L1 -4132 2431 1913 2110 95 24 20 chr11 23725751 23726047 -127057506 + AluSx SINE Alu 1 297 -15 621 310 101 42 chr11 23726047 23726410 -127057143 - L1MEc LINE L1 -4650 1913 1286 458 290 148 53 chr11 23726416 23726830 -127056723 - L1MEc LINE L1 -4983 1420 971 354 217 0 0 chr11 23727724 23727784 -127055769 - Tigger7 DNA MER2_type 0 2487 2428 2782 190 23 29 chr11 23727793 23728319 -127055234 - Tigger7 DNA MER2_type -1964 523 1 510 103 23 0 chr11 23728939 23729026 -127054527 - L1MA5A LINE L1 0 6297 6209 250 160 0 0 chr11 23729135 23729185 -127054368 + (TA)n Simple_repeat Simple_repeat 1 50 0 921 133 38 0 chr11 23729185 23729343 -127054210 - L1MA5A LINE L1 -92 6205 6042 216 297 94 43 chr11 23729632 23729770 -127053783 + MIR SINE MIR 118 262 0 453 250 88 25 chr11 23730108 23730268 -127053285 - MIR SINE MIR -50 212 43 1876 150 0 16 chr11 23730299 23730606 -127052947 - AluJo SINE Alu -10 302 1 1496 173 24 79 chr11 23730877 23731206 -127052347 - AluJo SINE Alu -1 311 1 2345 49 0 0 chr11 23731223 23731510 -127052043 - L1P LINE L1 -5495 651 365 7862 31 0 3 chr11 23731510 23733227 -127050326 + L1PA3 LINE L1 4442 6155 0 432 131 0 0 chr11 23733229 23733290 -127050263 - FLAM SINE Alu -23 120 60 1671 104 0 4 chr11 23733758 23733989 -127049564 - AluSq SINE Alu -14 299 70 228 256 35 47 chr11 23734641 23734727 -127048826 + MIR3 SINE MIR 10 94 -114 985 257 81 42 chr11 23734756 23735137 -127048416 + MSTD LTR MaLR 1 396 0 232 329 142 13 chr11 23735156 23735311 -127048242 + MIR SINE MIR 21 195 -67 195 323 15 0 chr11 23735472 23735537 -127048016 + MIR SINE MIR 197 262 0 206 228 139 25 chr11 23737116 23737195 -127046358 + L3 LINE CR1 1479 1566 -11 407 188 0 0 chr11 23738427 23738512 -127045041 - L1M4 LINE L1 -1626 4520 4436 2421 146 41 5 chr11 23738523 23738935 -127044618 - L1PA15 LINE L1 -3 6162 5736 23 0 0 0 chr11 23739082 23739105 -127044448 + AT_rich Low_complexity Low_complexity 1 23 0 21 57 0 0 chr11 23739426 23739461 -127044092 + AT_rich Low_complexity Low_complexity 1 35 0 286 148 0 19 chr11 23739605 23739659 -127043894 - MLT2A1 LTR ERVL -2 451 399 214 104 21 21 chr11 23739661 23739709 -127043844 + (TA)n Simple_repeat Simple_repeat 1 48 0 2718 97 31 5 chr11 23739727 23740117 -127043436 - MLT2A1 LTR ERVL -44 400 1 22 35 0 0 chr11 23740826 23740855 -127042698 + AT_rich Low_complexity Low_complexity 1 29 0 259 339 119 0 chr11 23740909 23741018 -127042535 - MIR SINE MIR -115 147 26 268 362 78 29 chr11 23741240 23741590 -127041963 - L2 LINE L2 -21 3292 2852 442 292 129 17 chr11 23742270 23742510 -127041043 + L1M4 LINE L1 3096 3362 -2784 205 229 0 62 chr11 23742864 23742960 -127040593 + T-rich Low_complexity Low_complexity 2 91 0 703 280 82 8 chr11 23744218 23744475 -127039078 + LTR16B LTR ERVL 187 462 -2 26 0 0 0 chr11 23744858 23744884 -127038669 + AT_rich Low_complexity Low_complexity 1 26 0 2816 124 140 22 chr11 23745661 23746210 -127037343 + LTR18B LTR ERVL 1 614 0 1641 188 0 11 chr11 23746828 23747140 -127036413 - AluJb SINE Alu 0 315 7 446 289 14 14 chr11 23747248 23747390 -127036163 - MER101 LTR ERV1 -55 419 278 1462 196 8 4 chr11 23747390 23747655 -127035898 + AluJo SINE Alu 1 266 -46 296 266 53 21 chr11 23747698 23747792 -127035761 - MER101B LTR ERV1 -276 294 198 338 209 14 39 chr11 23748082 23748172 -127035381 + MER5B DNA MER1_type 100 176 -2 32 91 0 0 chr11 23748253 23748341 -127035212 + AT_rich Low_complexity Low_complexity 1 88 0 1668 253 18 31 chr11 23748434 23748943 -127034610 - Charlie1b DNA MER1_type -15 508 7 4465 81 43 5 chr11 23749393 23750471 -127033082 - MER11A LTR ERVK 0 1266 1 366 258 71 31 chr11 23750614 23750811 -127032742 + L1ME3A LINE L1 5741 5886 -284 24 0 0 0 chr11 23751104 23751128 -127032425 + AT_rich Low_complexity Low_complexity 1 24 0 247 104 42 0 chr11 23751478 23751526 -127032027 + (TA)n Simple_repeat Simple_repeat 1 50 0 304 253 0 24 chr11 23751526 23751609 -127031944 + L1MC4 LINE L1 6612 6692 -1350 737 232 7 0 chr11 23751816 23751967 -127031586 + FRAM SINE Alu 2 153 -23 1031 283 108 26 chr11 23751991 23752454 -127031099 + HAL1 LINE L1 36 536 -1971 2502 50 20 0 chr11 23752532 23752834 -127030719 - AluY SINE Alu -3 308 1 241 283 141 0 chr11 23753028 23753205 -127030348 + HAL1 LINE L1 1956 2157 -350 677 181 84 48 chr11 23753217 23753324 -127030229 + MLT1B LTR MaLR 21 138 -252 2410 168 17 7 chr11 23753324 23753746 -127029807 + MSTB LTR MaLR 1 426 0 677 181 84 48 chr11 23753746 23753804 -127029749 + MLT1B LTR MaLR 138 192 -198 328 299 76 34 chr11 23753846 23754137 -127029416 + HAL1 LINE L1 2128 2430 -77 315 0 0 0 chr11 23754674 23754709 -127028844 + (CA)n Simple_repeat Simple_repeat 2 36 0 21 0 0 0 chr11 23755113 23755134 -127028419 + AT_rich Low_complexity Low_complexity 1 21 0 554 290 92 39 chr11 23755455 23755814 -127027739 + MLT1J2 LTR MaLR 73 450 0 30 27 0 0 chr11 23755949 23755986 -127027567 + AT_rich Low_complexity Low_complexity 1 37 0 344 264 0 44 chr11 23756170 23756261 -127027292 - L2 LINE L2 0 3313 3227 * 355 366 99 14 chr11 23756257 23756478 -127027075 - MIR SINE MIR -3 259 20 186 299 130 0 chr11 23757406 23757483 -127026070 + MIR SINE MIR 120 206 -56 331 358 93 9 chr11 23757496 23757722 -127025831 + L3 LINE CR1 934 1178 -399 324 0 0 0 chr11 23757738 23757774 -127025779 + (A)n Simple_repeat Simple_repeat 1 36 0 210 293 17 95 chr11 23758144 23758260 -127025293 - L3 LINE CR1 -214 1363 1257 508 376 37 12 chr11 23759072 23759394 -127024159 + L3 LINE CR1 1216 1545 -32 31 0 0 0 chr11 23759679 23759710 -127023843 + AT_rich Low_complexity Low_complexity 1 31 0 2579 232 17 18 chr11 23759710 23760361 -127023192 - L1MD3 LINE L1 -15 7980 7331 789 163 57 0 chr11 23761372 23761513 -127022040 + THE1C LTR MaLR 27 175 -200 1530 266 59 37 chr11 23761619 23762302 -127021251 - L1MC4 LINE L1 -633 7409 6712 6305 184 15 20 chr11 23762346 23763645 -127019908 - Ricksha_b DNA DNA -13 1241 1 226 288 0 0 chr11 23763646 23763726 -127019827 + (TA)n Simple_repeat Simple_repeat 2 81 0 435 236 7 40 chr11 23763785 23763933 -127019620 + L1M4 LINE L1 5101 5243 -903 2823 60 0 3 chr11 23763955 23764319 -127019234 + L1PA6 LINE L1 5792 6154 0 3842 239 55 25 chr11 23764584 23765385 -127018168 + L1MD1 LINE L1 3817 4681 -1465 2180 148 22 6 chr11 23765385 23765743 -127017810 + THE1B LTR MaLR 1 364 0 3842 239 55 25 chr11 23765743 23766359 -127017194 + L1MD1 LINE L1 4681 5277 -869 1180 159 72 24 chr11 23766399 23766650 -127016903 - Ricksha_b DNA DNA -621 633 371 288 122 0 0 chr11 23766650 23766699 -127016854 - L1M4 LINE L1 -992 5154 5106 2504 174 28 21 chr11 23766706 23767247 -127016306 + L1MD1 LINE L1 5334 5878 -364 654 181 0 0 chr11 23767254 23767359 -127016194 - FLAM_C SINE Alu -22 121 17 1269 191 58 20 chr11 23767359 23767652 -127015901 + L1MD1 LINE L1 5938 6241 -1 42 20 0 0 chr11 23768453 23768502 -127015051 + AT_rich Low_complexity Low_complexity 1 49 0 2181 164 18 46 chr11 23768653 23769091 -127014462 + MSTB LTR MaLR 1 426 0 306 270 44 36 chr11 23769148 23769285 -127014268 + L1MC4a LINE L1 5758 5895 -1913 2276 198 6 0 chr11 23770471 23770940 -127012613 + L1P LINE L1 4212 4683 -1463 344 111 16 0 chr11 23771361 23771424 -127012129 + (GA)n Simple_repeat Simple_repeat 1 64 0 1621 126 4 21 chr11 23771428 23771667 -127011886 + AluSg SINE Alu 58 292 -18 204 145 32 16 chr11 23771973 23772035 -127011518 + (TAGA)n Simple_repeat Simple_repeat 3 65 0 23 0 0 0 chr11 23772068 23772091 -127011462 + AT_rich Low_complexity Low_complexity 1 23 0 200 368 56 7 chr11 23772181 23772325 -127011228 + MIR SINE MIR 51 201 -61 826 264 141 6 chr11 23772975 23773301 -127010252 - MER66A LTR ERV1 -10 468 99 279 0 0 0 chr11 23773345 23773376 -127010177 + (T)n Simple_repeat Simple_repeat 1 31 0 2021 165 16 8 chr11 23773961 23774336 -127009217 - L1MA6 LINE L1 -107 6193 5816 534 119 59 20 chr11 23774337 23774438 -127009115 + L1MA5 LINE L1 6195 6299 -1 226 384 34 20 chr11 23774607 23774753 -127008800 + L2 LINE L2 3125 3272 0 28 61 0 0 chr11 23775120 23775169 -127008384 + AT_rich Low_complexity Low_complexity 1 49 0 22 56 0 0 chr11 23775315 23775351 -127008202 + AT_rich Low_complexity Low_complexity 1 36 0 21 57 0 0 chr11 23775524 23775559 -127007994 + AT_rich Low_complexity Low_complexity 1 35 0 187 340 62 0 chr11 23776165 23776262 -127007291 - L2 LINE L2 -217 3055 2953 2350 104 8 6 chr11 23776418 23776772 -127006781 + L1PA13 LINE L1 5804 6158 -5 371 257 103 63 chr11 23776790 23776965 -127006588 + MIR3 SINE MIR 1 182 -26 2265 92 0 7 chr11 23779258 23779551 -127004002 + AluY SINE Alu 1 291 -20 18996 123 14 12 chr11 23779825 23782802 -127000751 + L1PA6 LINE L1 12 2994 -3152 11392 61 4 3 chr11 23782802 23785065 -126998488 + L1PA6 LINE L1 3879 6154 0 196 330 28 38 chr11 23785159 23785265 -126998288 - L2 LINE L2 -788 2526 2422 200 162 0 0 chr11 23785407 23785444 -126998109 + L2 LINE L2 3277 3313 0 2565 39 3 0 chr11 23785688 23785996 -126997557 - AluY SINE Alu -2 309 1 221 258 45 0 chr11 23786177 23786243 -126997310 + (CATATA)n Simple_repeat Simple_repeat 4 72 0 2445 78 3 0 chr11 23786394 23786703 -126996850 - AluSq SINE Alu -1 312 3 191 273 15 30 chr11 23788385 23788451 -126995102 - MER5B DNA MER1_type -26 152 88 202 219 16 62 chr11 23788467 23788531 -126995022 - MER5A DNA MER1_type -12 177 117 * 237 310 31 39 chr11 23788478 23788607 -126994946 + MER5B DNA MER1_type 22 149 -29 1598 208 30 46 chr11 23788898 23789366 -126994187 - MER89 LTR ERV1 0 559 1 363 274 46 57 chr11 23789366 23789541 -126994012 - MIR SINE MIR -78 184 12 1837 141 3 17 chr11 23789716 23790013 -126993540 + AluSx SINE Alu 1 293 -19 376 19 38 0 chr11 23790013 23790066 -126993487 + (TA)n Simple_repeat Simple_repeat 2 56 0 23 33 0 0 chr11 23790653 23790683 -126992870 + AT_rich Low_complexity Low_complexity 1 30 0 1528 145 4 0 chr11 23791342 23791584 -126991969 - Tigger5 DNA MER2_type 0 2323 2081 371 244 13 0 chr11 23791577 23791655 -126991898 - Tigger5 DNA MER2_type -2244 79 1 * 568 158 44 18 chr11 23793392 23793506 -126990047 + L1MD1 LINE L1 6121 6237 -5 719 177 8 0 chr11 23793519 23793643 -126989910 - FLAM_C SINE Alu -18 125 1 350 352 74 22 chr11 23793727 23793957 -126989596 - MIR SINE MIR -6 256 15 418 211 24 38 chr11 23794970 23795069 -126988484 + LTR43 LTR ERV1 179 278 -401 2425 61 3 13 chr11 23795069 23795382 -126988171 + AluY SINE Alu 1 310 -1 418 211 24 38 chr11 23795382 23795431 -126988122 + LTR43 LTR ERV1 278 472 -207 1034 120 21 128 chr11 23798019 23798253 -126985300 - MER2 DNA MER2_type -135 210 2 677 278 123 21 chr11 23798427 23798801 -126984752 + L1MCb LINE L1 100 511 -5534 * 1463 259 28 13 chr11 23798788 23799248 -126984305 + L1M4 LINE L1 3879 4345 -1801 1058 230 104 0 chr11 23799248 23799518 -126984035 - MLT2B2 LTR ERVL -2 513 216 1376 172 13 98 chr11 23799518 23799907 -126983646 + L1MC3 LINE L1 7415 7770 -15 26 0 0 0 chr11 23800612 23800638 -126982915 + AT_rich Low_complexity Low_complexity 1 26 0 186 210 99 49 chr11 23801533 23801614 -126981939 + MIR SINE MIR 86 170 -92 377 23 0 0 chr11 23801961 23802005 -126981548 + THE1C LTR MaLR 1 44 -331 1312 226 0 8 chr11 23802204 23802469 -126981084 - AluJo SINE Alu -49 263 1 186 43 0 0 chr11 23802522 23802545 -126981008 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 22882 176 25 29 chr11 23802545 23809011 -126974542 - L1PA11 LINE L1 -10 6479 2 2111 137 13 53 chr11 23809098 23809477 -126974076 + THE1B LTR MaLR 1 364 0 10805 112 20 4 chr11 23809477 23811032 -126972521 + THE1B-int LTR MaLR 1 1580 0 1980 165 14 30 chr11 23811032 23811402 -126972151 + THE1B LTR MaLR 1 364 0 314 238 40 10 chr11 23811533 23811634 -126971919 + L1ME LINE L1 5685 5788 -374 759 282 77 42 chr11 23811698 23812052 -126971501 - MER77 LTR ERV1 -6 599 177 199 419 67 0 chr11 23812469 23812574 -126970979 + L2 LINE L2 3116 3227 -45 859 298 34 4 chr11 23812617 23812855 -126970698 + MIR SINE MIR 13 257 -5 2142 118 7 3 chr11 23813298 23813603 -126969950 - AluSx SINE Alu -2 310 5 3187 152 48 12 chr11 23814407 23814985 -126968568 - LTR26 LTR ERV1 -4 599 1 876 190 23 56 chr11 23815236 23815452 -126968101 + LOR1a LTR ERV1 289 497 0 208 390 6 41 chr11 23815556 23815728 -126967825 + L2 LINE L2 2926 3091 -181 824 251 62 46 chr11 23816526 23816961 -126966592 - MER69 DNA AcHobo -3 2523 2082 2085 139 33 41 chr11 23817011 23817378 -126966175 - THE1B LTR MaLR 0 364 1 227 317 0 12 chr11 23817781 23817863 -126965690 - MER69 DNA AcHobo -2445 81 1 2112 119 3 7 chr11 23818945 23819248 -126964305 + AluSq SINE Alu 1 302 -11 2374 146 3 3 chr11 23819642 23820005 -126963548 - THE1B LTR MaLR -1 363 1 1657 74 0 31 chr11 23820010 23820239 -126963314 - THE1B-int LTR MaLR -5 1575 1354 287 125 0 18 chr11 23820240 23820296 -126963257 - MLT2A2 LTR ERVL 0 453 399 305 123 0 18 chr11 23820296 23820353 -126963200 + (CATA)n Simple_repeat Simple_repeat 1 56 0 475 146 11 0 chr11 23820373 23820462 -126963091 - HERVL LTR ERVL -69 5585 5496 220 211 28 0 chr11 23820462 23820533 -126963020 + (TA)n Simple_repeat Simple_repeat 2 74 0 617 121 0 52 chr11 23820573 23820746 -126962807 + (TA)n Simple_repeat Simple_repeat 2 165 0 2913 100 25 0 chr11 23820750 23821149 -126962404 - MLT2A2 LTR ERVL -44 409 1 3025 81 21 9 chr11 23821180 23821615 -126961938 - HERVL-A2 LTR ERVL 0 5654 5215 1582 128 104 35 chr11 23821645 23821934 -126961619 - THE1B LTR MaLR -55 309 1 8583 128 40 8 chr11 23821934 23823249 -126960304 - THE1B-int LTR MaLR -223 1357 1 2373 123 19 6 chr11 23823249 23823608 -126959945 - THE1B LTR MaLR 0 364 1 349 257 248 63 chr11 23824108 23824314 -126959239 - MIR SINE MIR -12 250 7 2148 229 68 31 chr11 23825119 23825769 -126957784 - MER67C LTR ERV1 0 710 37 292 258 0 16 chr11 23826114 23826176 -126957377 - LTR16A LTR ERVL -285 165 105 638 175 39 71 chr11 23826670 23826824 -126956729 + LTR34 LTR ERV1 3 151 -548 1758 179 57 30 chr11 23826824 23827273 -126956280 - LTR10B LTR ERV1 0 547 1 4799 235 5 14 chr11 23827273 23828326 -126955227 - LTR10B-int LTR ERV1 0 6649 5607 652 241 25 42 chr11 23828862 23829103 -126954450 + HAL1 LINE L1 1273 1509 -998 2327 261 88 37 chr11 23829250 23830267 -126953286 + Cheshire DNA MER1_type 4 1071 -1349 399 215 13 0 chr11 23830247 23830326 -126953227 + Cheshire DNA MER1_type 1270 1349 -1071 * 1914 234 35 26 chr11 23830394 23830789 -126952764 + Cheshire DNA MER1_type 1660 2063 -357 2286 72 24 3 chr11 23830789 23831082 -126952471 - AluY SINE Alu -12 299 1 1914 234 35 26 chr11 23831082 23831233 -126952320 + Cheshire DNA MER1_type 2063 2211 -209 2771 104 22 7 chr11 23831234 23831647 -126951906 - L1PA13 LINE L1 -2 6161 5743 15612 198 15 3 chr11 23831747 23834957 -126948596 - L1P LINE L1 -927 5219 1972 516 272 7 7 chr11 23835061 23835197 -126948356 - HERVI LTR ERV1 -3527 4258 4123 201 98 24 24 chr11 23835230 23835271 -126948282 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 6621 221 70 67 chr11 23835274 23839024 -126944529 - HERVI LTR ERV1 -3673 4112 5 1853 182 53 30 chr11 23839024 23839475 -126944078 - LTR10B LTR ERV1 0 547 1 * 2717 156 72 13 chr11 23839475 23839996 -126943557 + LTR34 LTR ERV1 148 699 0 409 300 118 68 chr11 23840309 23840529 -126943024 + MER115 DNA AcHobo 11 241 -452 24 0 0 0 chr11 23840543 23840567 -126942986 + AT_rich Low_complexity Low_complexity 1 24 0 3609 165 36 29 chr11 23840823 23841545 -126942008 + LTR8A LTR ERV1 1 727 0 340 215 0 0 chr11 23841574 23841639 -126941914 + L1PA15-16 LINE L1 2830 2894 -3955 2077 153 11 25 chr11 23841639 23841999 -126941554 - THE1A LTR MaLR 0 355 1 7079 117 20 2 chr11 23841999 23843004 -126940549 - THE1A-int LTR MaLR 0 1580 558 1430 240 2 16 chr11 23843003 23843440 -126940113 + L1P LINE L1 4906 5336 -810 * 4176 184 23 15 chr11 23843592 23844452 -126939101 + L1 LINE L1 3534 4400 -1746 474 250 50 0 chr11 23844709 23844829 -126938724 + MER94 DNA DNA 8 133 -1 590 304 62 18 chr11 23845004 23845231 -126938322 - MIR SINE MIR -25 237 1 23 0 0 0 chr11 23846024 23846047 -126937506 + AT_rich Low_complexity Low_complexity 1 23 0 218 215 0 15 chr11 23846909 23846974 -126936579 + (TATG)n Simple_repeat Simple_repeat 2 65 0 292 172 29 3 chr11 23847225 23847293 -126936260 + L1MB8 LINE L1 5894 5965 -199 216 246 29 0 chr11 23847603 23847679 -126935874 + (TA)n Simple_repeat Simple_repeat 1 78 0 2337 81 0 3 chr11 23847788 23848095 -126935458 + AluY SINE Alu 1 306 -5 2345 177 36 27 chr11 23848245 23848828 -126934725 - L1MB8 LINE L1 -1 6177 5590 225 0 0 0 chr11 23848846 23848871 -126934682 + (TG)n Simple_repeat Simple_repeat 2 26 0 315 0 0 0 chr11 23848884 23848919 -126934634 + (TA)n Simple_repeat Simple_repeat 2 36 0 330 297 20 20 chr11 23849365 23849466 -126934087 - MER5A DNA MER1_type -50 139 39 238 333 53 9 chr11 23849366 23849480 -126934073 + MER5A DNA MER1_type 61 179 -10 * 815 82 11 1 chr11 23849811 23849937 -126933616 + L1MA1 LINE L1 5724 5859 -296 1511 194 28 0 chr11 23849937 23850220 -126933333 - AluJo SINE Alu -21 291 1 959 198 11 0 chr11 23850222 23850404 -126933149 + Tigger3(Golem) DNA MER2_type 2833 3016 -13 889 147 16 16 chr11 23850404 23850594 -126932959 + L1MA8 LINE L1 6098 6287 -4 1802 135 40 3 chr11 23851038 23851334 -126932219 + AluSq SINE Alu 1 307 -6 1989 140 31 0 chr11 23852259 23852551 -126931002 + AluSx SINE Alu 1 301 -11 212 200 60 0 chr11 23853943 23853993 -126929560 + (CATATA)n Simple_repeat Simple_repeat 1 53 0 1772 239 109 0 chr11 23854117 23854557 -126928996 - MLT1E2 LTR MaLR -2 624 137 6168 185 15 27 chr11 23854603 23856384 -126927169 - L1PA16 LINE L1 -9 6157 4414 216 0 0 0 chr11 23856384 23856408 -126927145 + (TG)n Simple_repeat Simple_repeat 1 24 0 6168 185 15 27 chr11 23856408 23856955 -126926598 - L1PA16 LINE L1 -1752 4414 3862 221 188 40 50 chr11 23857747 23857848 -126925705 + A-rich Low_complexity Low_complexity 2 101 0 32 57 0 0 chr11 23857797 23857850 -126925703 + AT_rich Low_complexity Low_complexity 1 53 0 * 4750 148 33 22 chr11 23858176 23858993 -126924560 - LTR1B LTR ERV1 0 826 1 597 218 43 41 chr11 23858993 23859177 -126924376 - MIR SINE MIR -22 240 57 324 296 107 6 chr11 23859872 23860031 -126923522 - MIR SINE MIR -64 198 24 39933 41 22 2 chr11 23860052 23866072 -126917481 + L1PA3 LINE L1 5 6150 -5 304 333 63 0 chr11 23866322 23866448 -126917105 - L2 LINE L2 -223 3049 2916 186 43 0 0 chr11 23866934 23866957 -126916596 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 726 271 26 0 chr11 23867296 23867488 -126916065 - MIR SINE MIR -6 256 60 230 322 13 54 chr11 23867589 23867738 -126915815 - L2 LINE L2 -15 3298 3156 597 174 7 58 chr11 23867840 23867995 -126915558 - LTR37A LTR ERV1 -231 195 49 1261 322 56 29 chr11 23868036 23868661 -126914892 + L2 LINE L2 2218 2859 -455 23 0 0 0 chr11 23869390 23869413 -126914140 + AT_rich Low_complexity Low_complexity 1 23 0 341 65 0 0 chr11 23869562 23869608 -126913945 - MADE1 DNA Mariner 0 80 35 277 130 0 0 chr11 23869834 23869880 -126913673 + MADE1 DNA Mariner 35 80 0 256 213 0 0 chr11 23870586 23870647 -126912906 + LTR58 LTR ERV1 350 410 -269 304 311 15 15 chr11 23871894 23872110 -126911443 + HERV17 LTR ERV1 526 1633 -5043 555 326 59 53 chr11 23873742 23874355 -126909198 + HERV17 LTR ERV1 2702 3323 -3799 2033 128 34 0 chr11 23874355 23874651 -126908902 - AluSx SINE Alu -6 306 1 555 326 59 53 chr11 23874651 23874938 -126908615 + HERV17 LTR ERV1 3323 3607 -3515 258 301 40 40 chr11 23875224 23875473 -126908080 + HERV17 LTR ERV1 4588 4836 -2920 455 326 37 40 chr11 23876026 23876490 -126907063 + HERV17 LTR ERV1 5384 6422 -1910 2387 186 15 9 chr11 23878000 23878458 -126905095 + LTR32 LTR ERVL 11 471 0 195 171 9 45 chr11 23879037 23879148 -126904405 + (TA)n Simple_repeat Simple_repeat 2 108 0 1683 189 9 0 chr11 23880347 23880664 -126902889 + L1MC1 LINE L1 6012 6331 -2 754 171 0 29 chr11 23880699 23880839 -126902714 + Tigger1 DNA MER2_type 1 136 -2282 798 189 18 77 chr11 23880847 23881069 -126902484 + Tigger1 DNA MER2_type 2210 2418 0 526 294 32 18 chr11 23881931 23882127 -126901426 + MIR SINE MIR 3 198 -64 700 197 67 59 chr11 23882130 23882275 -126901278 + MER33 DNA MER1_type 1 150 -2435 2368 77 3 0 chr11 23882275 23882574 -126900979 + AluY SINE Alu 2 301 -10 700 197 67 59 chr11 23882574 23882682 -126900871 + MER33 DNA MER1_type 150 256 -68 395 329 7 7 chr11 23882840 23882980 -126900573 - MIR SINE MIR -12 250 111 372 211 102 47 chr11 23883233 23883361 -126900192 + MIR SINE MIR 21 155 -107 7659 25 5 0 chr11 23883815 23885499 -126898054 - L1PA3 LINE L1 -3 6152 4464 12724 37 0 2 chr11 23885501 23887144 -126896409 + L1PA3 LINE L1 2827 4465 -1681 21 0 0 0 chr11 23887495 23887516 -126896037 + AT_rich Low_complexity Low_complexity 1 21 0 395 281 23 58 chr11 23888376 23888547 -126895006 - MER115 DNA AcHobo -112 581 417 3605 173 15 24 chr11 23888555 23889069 -126894484 - L1PA16 LINE L1 -159 6007 5502 2421 80 0 0 chr11 23889069 23889368 -126894185 - AluY SINE Alu -12 299 1 3605 173 15 24 chr11 23889368 23889677 -126893876 - L1PA16 LINE L1 -664 5502 5192 1321 158 0 5 chr11 23939677 23939880 -126843673 + AluSg/x SINE Alu 75 276 -36 279 0 0 0 chr11 23939885 23939916 -126843637 + (CAAA)n Simple_repeat Simple_repeat 1 31 0 635 246 29 79 chr11 23939916 23940156 -126843397 + L1MB8 LINE L1 1551 1778 -4606 643 271 86 37 chr11 23940310 23941115 -126842438 + L1MB8 LINE L1 1826 2615 -3767 * 2378 291 43 47 chr11 23941101 23941847 -126841706 + L1MB8 LINE L1 5672 6414 0 349 198 81 0 chr11 23941850 23941936 -126841617 - MER53 DNA DNA -1 188 96 307 178 9 122 chr11 23941969 23942076 -126841477 + MER53 DNA DNA 95 189 0 2794 92 76 35 chr11 23942384 23942603 -126840950 + MLT2A2 LTR ERVL 1 209 -244 4914 64 17 0 chr11 23942603 23943274 -126840279 + L1PA8 LINE L1 5512 6193 0 2794 92 76 35 chr11 23943274 23943450 -126840103 + MLT2A2 LTR ERVL 209 420 -33 369 0 0 0 chr11 23943450 23943491 -126840062 + (TA)n Simple_repeat Simple_repeat 2 42 0 2794 92 76 35 chr11 23943491 23943527 -126840026 + MLT2A2 LTR ERVL 420 453 0 268 291 0 38 chr11 23943951 23944030 -126839523 - MARNA DNA Mariner -416 170 95 192 364 124 23 chr11 23944133 23944262 -126839291 - L2 LINE L2 -15 3257 3116 643 266 54 5 chr11 23944809 23944993 -126838560 + MLT1F1 LTR MaLR 351 543 -24 646 219 55 125 chr11 23945012 23945323 -126838230 - MLT1A1 LTR MaLR -75 290 2 1904 151 66 26 chr11 23945469 23945819 -126837734 + THE1B LTR MaLR 1 364 0 577 241 85 11 chr11 23945895 23946165 -126837388 + L1MB8 LINE L1 5010 5299 -847 344 321 54 33 chr11 23946334 23946518 -126837035 + MLT1J2 LTR MaLR 263 450 0 529 305 44 0 chr11 23947024 23947227 -126836326 - MIR SINE MIR -10 252 41 252 336 55 16 chr11 23948889 23949017 -126834536 + MIR SINE MIR 57 189 -73 21 0 0 0 chr11 23949068 23949089 -126834464 + AT_rich Low_complexity Low_complexity 1 21 0 530 263 114 31 chr11 23949271 23949499 -126834054 - MIR SINE MIR -1 261 15 189 107 0 0 chr11 23950167 23950195 -126833358 + (TTCC)n Simple_repeat Simple_repeat 3 30 0 278 391 45 11 chr11 23950521 23950700 -126832853 - MIR SINE MIR -76 186 2 2527 104 8 8 chr11 23951115 23951489 -126832064 - THE1C LTR MaLR -1 374 1 1565 235 33 9 chr11 23951980 23952410 -126831143 + L1MB8 LINE L1 5692 6131 -47 180 0 0 0 chr11 23952912 23952932 -126830621 + (T)n Simple_repeat Simple_repeat 1 20 0 395 316 8 17 chr11 23953286 23953403 -126830150 - L2 LINE L2 -13 3300 3185 1467 299 169 15 chr11 23953562 23954438 -126829115 - L2 LINE L2 -33 3280 2243 2042 130 3 3 chr11 23954456 23954756 -126828797 + AluSx SINE Alu 2 301 -11 901 270 51 52 chr11 23954761 23955344 -126828209 - L2 LINE L2 -158 3155 2518 14783 27 1 1 chr11 23955437 23957967 -126825586 - L1PA3 LINE L1 0 6155 3627 180 304 62 54 chr11 23958576 23958688 -126824865 - L2 LINE L2 -1 3312 3200 232 324 103 55 chr11 23958713 23958858 -126824695 + L2 LINE L2 2581 2732 -582 479 328 30 10 chr11 23958881 23959079 -126824474 - MLT1K LTR MaLR -23 565 364 183 129 0 0 chr11 23960298 23960329 -126823224 + (TATATG)n Simple_repeat Simple_repeat 6 36 0 5217 169 42 8 chr11 23960899 23961951 -126821602 + Tigger3b DNA MER2_type 3 1090 -141 315 50 0 0 chr11 23961989 23962029 -126821524 - AluY SINE Alu -196 105 66 40993 33 21 3 chr11 23962048 23968084 -126815469 - L1PA2 LINE L1 0 6155 3 689 226 0 0 chr11 23968100 23968237 -126815316 + Tigger3b DNA MER2_type 1096 1232 0 303 28 0 0 chr11 23968240 23968276 -126815277 + (CA)n Simple_repeat Simple_repeat 2 37 0 349 224 112 15 chr11 23968324 23968458 -126815095 + MLT1J2 LTR MaLR 70 216 -234 3288 200 23 7 chr11 23968581 23969281 -126814272 - MER50 LTR ERV1 -23 711 1 425 324 51 5 chr11 23969569 23969767 -126813786 - MIR SINE MIR -17 245 34 661 332 80 43 chr11 23970106 23970666 -126812887 + L2 LINE L2 2730 3313 0 2443 80 23 0 chr11 23970706 23971007 -126812546 + AluSq SINE Alu 1 308 -5 358 323 89 6 chr11 23971027 23971185 -126812368 + MIR SINE MIR 5 175 -87 1071 270 0 0 chr11 23972094 23972353 -126811200 + MER77 LTR ERV1 344 602 -3 328 245 0 13 chr11 23972468 23972619 -126810934 + (TG)n Simple_repeat Simple_repeat 1 149 0 324 303 69 41 chr11 23972630 23972828 -126810725 - L2 LINE L2 -307 2965 2761 303 246 73 36 chr11 23972874 23972984 -126810569 + L1ME LINE L1 5727 5840 -281 294 164 0 0 chr11 23973073 23973128 -126810425 + (TA)n Simple_repeat Simple_repeat 2 56 0 27 49 0 0 chr11 23973288 23973329 -126810224 + AT_rich Low_complexity Low_complexity 1 41 0 362 319 186 49 chr11 23973429 23973912 -126809641 - L2 LINE L2 -782 2532 2116 2126 57 0 8 chr11 23973912 23974175 -126809378 - AluY SINE Alu -10 301 41 362 319 186 49 chr11 23974175 23974482 -126809071 - L2 LINE L2 -1198 2116 1634 659 229 0 0 chr11 23975092 23975214 -126808339 - AluSg/x SINE Alu -27 283 162 1709 179 6 22 chr11 23975249 23975561 -126807992 - AluJb SINE Alu -5 307 1 24 32 0 0 chr11 23975570 23975601 -126807952 + AT_rich Low_complexity Low_complexity 1 31 0 199 377 29 43 chr11 23975959 23976097 -126807456 - MIR SINE MIR -112 150 15 180 361 33 16 chr11 23976265 23976326 -126807227 + L3b LINE CR1 1504 1565 -18 1574 232 183 35 chr11 23976876 23977257 -126806296 - MLT1E1 LTR MaLR 0 654 331 1498 138 30 0 chr11 23977257 23977525 -126806028 - L1MA4 LINE L1 -5 6295 6020 1574 232 183 35 chr11 23977525 23977713 -126805840 - MLT1E1 LTR MaLR -323 331 1 320 209 91 0 chr11 23979118 23979228 -126804325 - Charlie5 DNA MER1_type -27 2585 2466 1005 195 0 15 chr11 23979534 23979739 -126803814 + BaEV-int LTR ERV1 5290 5491 -1158 22 56 0 0 chr11 23980199 23980235 -126803318 + AT_rich Low_complexity Low_complexity 1 36 0 10444 24 1 1 chr11 23980236 23981519 -126802034 - L1P LINE L1 -1168 4978 3696 332 287 0 21 chr11 23982247 23982341 -126801212 - MLT1E2 LTR MaLR -92 532 441 713 285 61 26 chr11 23982540 23982861 -126800692 - MLT1E2 LTR MaLR -174 452 184 745 208 0 0 chr11 23982861 23982991 -126800562 + FLAM_A SINE Alu 1 130 -12 417 239 190 6 chr11 23983000 23983163 -126800390 - MLT1E2 LTR MaLR -460 194 2 3785 148 21 28 chr11 23983764 23984480 -126799073 + MER50 LTR ERV1 1 711 -23 23 0 0 0 chr11 23984673 23984696 -126798857 + AT_rich Low_complexity Low_complexity 1 23 0 38540 71 4 5 chr11 23984884 23991025 -126792528 + L1PA5 LINE L1 11 6148 -6 30 0 0 0 chr11 23991166 23991196 -126792357 + AT_rich Low_complexity Low_complexity 1 30 0 799 219 185 24 chr11 23991227 23991524 -126792029 + L1MD2 LINE L1 6005 6349 -10 440 165 0 47 chr11 23991532 23991617 -126791936 - FRAM SINE Alu -22 154 74 1665 74 4 4 chr11 23991717 23991946 -126791607 - L1PA6 LINE L1 -21 6133 5905 2352 160 10 0 chr11 23992445 23992844 -126790709 - MER57A LTR ERV1 0 403 1 421 265 23 15 chr11 23993515 23993647 -126789906 + LTR68 LTR ERV1 302 434 -306 531 172 0 0 chr11 23993703 23993796 -126789757 - L1MC/D LINE L1 -723 5636 5544 485 325 164 3 chr11 23993806 23994160 -126789393 + MER69 DNA AcHobo 136 546 -680 999 223 78 35 chr11 23994192 23994681 -126788872 + MER69 DNA AcHobo 2017 2526 0 3383 58 4 13 chr11 23994927 23995379 -126788174 - LTR7 LTR ERV1 -2 448 1 2327 82 48 13 chr11 23995379 23995756 -126787797 - HERVH LTR ERV1 0 7713 7324 1210 148 18 5 chr11 23995756 23995973 -126787580 - HERVH LTR ERV1 -1894 5819 5600 3936 145 21 3 chr11 23995974 23996624 -126786929 - HERVH LTR ERV1 -2564 5149 4488 3166 110 6 6 chr11 23996626 23997128 -126786425 - HERVH LTR ERV1 -3720 3993 3492 875 128 20 0 chr11 23997118 23997266 -126786287 - HERVH LTR ERV1 -4423 3290 3140 * 18492 104 19 12 chr11 23997245 24000221 -126783332 - HERVH LTR ERV1 -4718 2995 1 3399 58 4 13 chr11 24000223 24000675 -126782878 - LTR7 LTR ERV1 -2 448 1 283 307 57 0 chr11 24001378 24001466 -126782087 - L2 LINE L2 0 3272 3180 569 311 129 15 chr11 24002169 24002433 -126781120 + L2 LINE L2 1382 1675 -1639 222 191 0 0 chr11 24002863 24002910 -126780643 + (TG)n Simple_repeat Simple_repeat 2 48 0 238 191 17 104 chr11 24002958 24003073 -126780480 + L1ME4a LINE L1 5964 6068 -53 361 326 125 8 chr11 24003182 24003526 -126780027 + MLT1F LTR MaLR 1 346 -196 603 339 39 9 chr11 24003603 24003836 -126779717 + MIR SINE MIR 2 241 -21 213 39 0 0 chr11 24004420 24004446 -126779107 + (T)n Simple_repeat Simple_repeat 1 26 0 7755 20 0 2 chr11 24004471 24005785 -126777768 - L1PA3 LINE L1 -1 6154 4842 387 0 0 0 chr11 24006335 24006378 -126777175 + (CA)n Simple_repeat Simple_repeat 1 43 0 275 116 58 14 chr11 24006512 24006581 -126776972 - MER116 DNA Mariner -3 77 6 21 36 0 0 chr11 24007689 24007717 -126775836 + AT_rich Low_complexity Low_complexity 1 28 0 506 197 68 83 chr11 24008267 24008531 -126775022 - LTR37B LTR ERV1 -55 413 154 289 292 0 0 chr11 24008674 24008739 -126774814 + L2 LINE L2 3235 3299 -14 210 71 0 0 chr11 24008743 24008771 -126774782 + (TGGA)n Simple_repeat Simple_repeat 4 31 0 2182 156 5 24 chr11 24008861 24009232 -126774321 - THE1B LTR MaLR 0 364 1 11198 101 15 9 chr11 24009232 24010802 -126772751 - THE1B-int LTR MaLR 0 1580 1 610 138 0 0 chr11 24010822 24010909 -126772644 - THE1B LTR MaLR -277 87 1 682 181 15 0 chr11 24011096 24011229 -126772324 - L1MA9 LINE L1 -145 6167 6033 811 209 25 0 chr11 24011319 24011477 -126772076 + FAM SINE Alu 1 162 -13 288 319 60 17 chr11 24011704 24011820 -126771733 + L2 LINE L2 3187 3307 -6 237 265 15 15 chr11 24012771 24012839 -126770714 - L2 LINE L2 -84 3229 3162 4082 182 107 163 chr11 24012948 24014808 -126768745 + MER52A LTR ERV1 1 1754 -1 265 190 266 38 chr11 24014904 24014983 -126768570 + FRAM SINE Alu 1 91 -75 28 48 0 0 chr11 24017275 24017317 -126766236 + AT_rich Low_complexity Low_complexity 1 42 0 231 125 0 0 chr11 24017679 24017719 -126765834 + (TG)n Simple_repeat Simple_repeat 2 41 0 185 197 16 0 chr11 24018868 24018929 -126764624 + (TA)n Simple_repeat Simple_repeat 2 63 0 3164 158 8 8 chr11 24019383 24019910 -126763643 - MER1A DNA MER1_type 0 527 1 312 301 58 29 chr11 24020067 24020240 -126763313 + MIR SINE MIR 58 235 -27 779 148 59 0 chr11 24021279 24021414 -126762139 - L1MA7 LINE L1 -365 5926 5784 333 193 0 24 chr11 24021414 24021480 -126762073 + L1MA7 LINE L1 6209 6289 -2 260 309 121 34 chr11 24021627 24021892 -126761661 + L1MCc LINE L1 112 399 -6024 973 243 57 7 chr11 24021942 24022222 -126761331 - MER58B DNA MER1_type -42 299 6 1403 245 107 55 chr11 24022288 24022830 -126760723 - MLT1E2 LTR MaLR -5 621 52 189 276 52 17 chr11 24023604 24023662 -126759891 + MIR SINE MIR 82 141 -67 1462 91 0 0 chr11 24024215 24024413 -126759140 + AluY SINE Alu 51 248 -63 223 258 0 15 chr11 24025112 24025178 -126758375 + (TATATG)n Simple_repeat Simple_repeat 4 68 0 2311 253 61 39 chr11 24025822 24026040 -126757513 + L1ME2 LINE L1 4524 4736 -1428 1576 163 0 8 chr11 24026040 24026298 -126757255 + AluJb SINE Alu 1 256 -56 2311 253 61 39 chr11 24026298 24027666 -126755887 + L1ME2 LINE L1 4736 6145 -19 20285 52 12 2 chr11 24028418 24031781 -126751772 + L1PA5 LINE L1 2780 6152 -2 25 0 0 0 chr11 24032754 24032779 -126750774 + AT_rich Low_complexity Low_complexity 1 25 0 344 275 55 77 chr11 24033283 24033465 -126750088 - MIR SINE MIR -64 198 21 1802 153 7 7 chr11 24033794 24034075 -126749478 - AluJb SINE Alu -31 281 1 323 331 97 26 chr11 24034718 24034872 -126748681 - L2 LINE L2 -1 3271 3107 441 147 13 0 chr11 24035582 24035657 -126747896 - MER4D LTR ERV1 0 903 828 1612 186 3 59 chr11 24035906 24036260 -126747293 - MER4E LTR ERV1 -79 700 367 23 0 0 0 chr11 24036307 24036330 -126747223 + AT_rich Low_complexity Low_complexity 1 23 0 473 229 0 0 chr11 24036984 24037067 -126746486 + MER2 DNA MER2_type 2 84 -261 * 590 145 23 100 chr11 24037061 24037261 -126746292 - MER67C LTR ERV1 -357 157 72 389 279 115 44 chr11 24037384 24037657 -126745896 + MLT1H LTR MaLR 189 547 -2 1143 230 111 47 chr11 24037961 24038499 -126745054 + LTR24B LTR ERV1 12 569 -7 220 200 20 0 chr11 24039834 24039884 -126743669 + (CA)n Simple_repeat Simple_repeat 1 51 0 291 299 79 85 chr11 24039953 24040130 -126743423 + MIR SINE MIR 71 246 -16 345 356 82 0 chr11 24040191 24040337 -126743216 - L2 LINE L2 0 3272 3115 214 279 73 44 chr11 24041141 24041209 -126742344 - MIR SINE MIR -171 91 22 897 203 61 20 chr11 24041487 24041733 -126741820 - LTR48B LTR ERV1 -5 639 384 1191 206 56 12 chr11 24041953 24042205 -126741348 - LTR48B LTR ERV1 -379 265 3 424 215 21 21 chr11 24042215 24042308 -126741245 + MIR SINE MIR 119 211 -51 2269 145 43 43 chr11 24042360 24042780 -126740773 + LTR49 LTR ERV1 7 426 -169 3166 183 45 16 chr11 24042780 24043407 -126740146 - MER39B LTR ERV1 0 653 9 650 183 38 12 chr11 24043406 24043583 -126739970 + LTR49 LTR ERV1 473 593 -2 * 3198 241 58 28 chr11 24043589 24045139 -126738414 - L1MC/D LINE L1 -693 5926 4336 664 254 35 45 chr11 24045164 24045365 -126738188 - MLT1D LTR MaLR -302 203 5 1151 234 51 56 chr11 24045380 24045701 -126737852 - L1MDa LINE L1 -3654 2752 2431 408 88 0 0 chr11 24045701 24045758 -126737795 + (TG)n Simple_repeat Simple_repeat 2 58 0 1151 234 51 56 chr11 24045758 24046128 -126737425 - L1MDa LINE L1 -3975 2431 2094 268 286 50 8 chr11 24046191 24046310 -126737243 + L1MDa LINE L1 2042 2165 -4375 296 219 73 0 chr11 24046324 24046406 -126737147 - L1MDa LINE L1 -4530 1876 1789 * 323 314 36 22 chr11 24046388 24046525 -126737028 - L1MDa LINE L1 -5923 486 348 718 290 40 28 chr11 24046565 24046817 -126736736 - L1MDa LINE L1 -6147 262 8 204 40 0 0 chr11 24046873 24046898 -126736655 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 22 0 0 0 chr11 24047617 24047639 -126735914 + AT_rich Low_complexity Low_complexity 1 22 0 1983 127 14 3 chr11 24048821 24049105 -126734448 - AluJb SINE Alu -25 287 1 204 125 0 0 chr11 24049271 24049303 -126734250 + (TC)n Simple_repeat Simple_repeat 1 32 0 270 0 0 0 chr11 24049303 24049333 -126734220 + (TG)n Simple_repeat Simple_repeat 1 30 0 22 35 0 0 chr11 24049384 24049413 -126734140 + AT_rich Low_complexity Low_complexity 1 29 0 1174 236 30 43 chr11 24049694 24050062 -126733491 - MLT1A1 LTR MaLR -2 363 1 36 40 0 0 chr11 24050434 24050484 -126733069 + AT_rich Low_complexity Low_complexity 1 50 0 1752 176 3 0 chr11 24050503 24050792 -126732761 - AluSx SINE Alu -22 290 1 1224 224 82 45 chr11 24051313 24051693 -126731860 - MSTD LTR MaLR 0 396 3 858 301 37 71 chr11 24053162 24053375 -126730178 - MER115 DNA AcHobo 0 693 501 1975 125 20 10 chr11 24053375 24053670 -126729883 + AluSg SINE Alu 1 298 -12 858 301 37 71 chr11 24053670 24053892 -126729661 - MER115 DNA AcHobo -192 501 273 837 250 26 44 chr11 24054116 24054344 -126729209 + MIR SINE MIR 34 257 -5 241 185 19 19 chr11 24056080 24056134 -126727419 + CT-rich Low_complexity Low_complexity 1 54 0 21 36 0 0 chr11 24056139 24056167 -126727386 + AT_rich Low_complexity Low_complexity 1 28 0 497 322 53 33 chr11 24056502 24056747 -126726806 - MLT1J2 LTR MaLR -145 305 56 2263 152 28 30 chr11 24056958 24057385 -126726168 - MSTB LTR MaLR 0 426 1 292 346 75 9 chr11 24057787 24057894 -126725659 + MER91A DNA MER1_type 45 158 -38 243 375 11 0 chr11 24058092 24058180 -126725373 + MIR3 SINE MIR 113 201 -7 2355 155 18 56 chr11 24058288 24058803 -126724750 - L1MA4 LINE L1 -6 6294 5800 811 175 0 22 chr11 24058857 24058994 -126724559 + FRAM SINE Alu 16 149 -27 8821 205 30 12 chr11 24059004 24059671 -126723882 - L1MA4 LINE L1 -1289 4857 4203 237 65 0 0 chr11 24059671 24059702 -126723851 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 8821 205 30 12 chr11 24059702 24060719 -126722834 - L1MA4 LINE L1 -1943 4203 3127 2474 45 13 10 chr11 24060719 24061027 -126722526 - AluY SINE Alu -2 309 1 8821 205 30 12 chr11 24061027 24061398 -126722155 - L1MA4 LINE L1 -3019 3127 2764 22 94 0 0 chr11 24061475 24061539 -126722014 + AT_rich Low_complexity Low_complexity 1 64 0 2073 142 3 0 chr11 24061740 24062050 -126721503 + AluSx SINE Alu 1 311 -1 22 0 0 0 chr11 24062411 24062433 -126721120 + AT_rich Low_complexity Low_complexity 1 22 0 413 205 36 0 chr11 24062680 24062792 -126720761 + L1MA7 LINE L1 6174 6289 -2 26 74 0 0 chr11 24062793 24062847 -126720706 + AT_rich Low_complexity Low_complexity 1 54 0 529 355 14 5 chr11 24063052 24063272 -126720281 + MIR SINE MIR 31 252 -10 183 324 102 19 chr11 24063309 24063417 -126720136 - L2 LINE L2 -33 3280 3164 301 234 130 0 chr11 24063989 24064066 -126719487 - HERV16 LTR ERVL -4287 709 623 24 0 0 0 chr11 24064397 24064421 -126719132 + AT_rich Low_complexity Low_complexity 1 24 0 27 62 0 0 chr11 24064674 24064722 -126718831 + AT_rich Low_complexity Low_complexity 1 48 0 197 205 0 26 chr11 24065318 24065357 -126718196 - L2 LINE L2 -15 3298 3261 726 205 12 6 chr11 24065402 24065568 -126717985 + L1MA4 LINE L1 4238 4404 -1742 678 101 0 0 chr11 24065574 24065683 -126717870 - L1P LINE L1 -3680 2466 2358 * 5154 167 12 14 chr11 24065679 24066681 -126716872 + L1MA4 LINE L1 5295 6300 0 5006 242 26 14 chr11 24066859 24068296 -126715257 - L1 LINE L1 -2261 3885 2431 765 220 57 0 chr11 24068291 24068450 -126715103 + L1MA9 LINE L1 5914 6081 -231 * 406 186 13 1 chr11 24068455 24068553 -126715000 + L1MA9 LINE L1 6183 6290 -9 271 307 72 48 chr11 24068599 24068765 -126714788 - MIR SINE MIR -46 216 47 325 151 118 32 chr11 24068889 24068982 -126714571 - MIR SINE MIR -65 197 97 318 253 127 40 chr11 24069092 24069242 -126714311 + MLT1C LTR MaLR 66 228 -239 421 296 37 7 chr11 24069243 24069378 -126714175 + MIR SINE MIR 17 155 -107 1008 192 0 13 chr11 24070029 24070263 -126713290 + L1MA4 LINE L1 6069 6299 -1 7344 40 0 0 chr11 24070317 24071382 -126712171 - L1PA5 LINE L1 0 6154 5089 8616 34 0 0 chr11 24071382 24072412 -126711141 + L1PA5 LINE L1 4071 5100 -1046 984 363 76 32 chr11 24072808 24073060 -126710493 - MER115 DNA AcHobo -1 692 453 2219 118 0 6 chr11 24073060 24073373 -126710180 - AluY SINE Alu 0 311 1 984 363 76 32 chr11 24073373 24073748 -126709805 - MER115 DNA AcHobo -240 453 37 23 0 0 0 chr11 24074443 24074466 -126709087 + AT_rich Low_complexity Low_complexity 1 23 0 5264 82 54 5 chr11 24075142 24075886 -126707667 - LTR17 LTR ERV1 0 780 1 21 36 0 0 chr11 24075920 24075948 -126707605 + AT_rich Low_complexity Low_complexity 1 28 0 426 329 41 0 chr11 24076120 24076266 -126707287 + MIR SINE MIR 111 262 0 515 246 108 11 chr11 24078321 24078581 -126704972 + MER69 DNA AcHobo 2090 2374 -152 26 50 0 0 chr11 24078581 24078621 -126704932 + AT_rich Low_complexity Low_complexity 1 40 0 70 48 0 0 chr11 24078656 24078761 -126704792 + AT_rich Low_complexity Low_complexity 1 105 0 332 211 32 21 chr11 24078771 24078866 -126704687 + MER69 DNA AcHobo 2414 2509 -17 328 265 125 52 chr11 24079050 24079186 -126704367 - MIR SINE MIR -83 179 34 22 0 0 0 chr11 24079411 24079433 -126704120 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr11 24079508 24079536 -126704017 + AT_rich Low_complexity Low_complexity 1 28 0 394 267 42 0 chr11 24079563 24079728 -126703825 + L1M4 LINE L1 2814 2985 -3161 3138 251 43 13 chr11 24079743 24080844 -126702709 + L1M4 LINE L1 2446 3579 -2567 1863 144 29 16 chr11 24080844 24081150 -126702403 + AluSx SINE Alu 1 310 -2 36 87 0 0 chr11 24081460 24081552 -126702001 + AT_rich Low_complexity Low_complexity 1 92 0 232 338 58 45 chr11 24081723 24081877 -126701676 - L2 LINE L2 -1 3271 3116 344 242 0 22 chr11 24081989 24082080 -126701473 - MER117 DNA MER1_type -102 95 7 216 255 0 0 chr11 24082942 24082993 -126700560 + L2 LINE L2 3263 3313 0 376 290 16 75 chr11 24083157 24083343 -126700210 - MER5B DNA MER1_type 0 178 4 207 69 0 0 chr11 24084332 24084361 -126699192 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2168 96 0 3 chr11 24084443 24084767 -126698786 + AluSx SINE Alu 1 323 0 242 294 59 39 chr11 24084992 24085094 -126698459 - MLT2E LTR ERVL -490 138 35 1600 206 18 97 chr11 24085419 24085924 -126697629 - MLT1C LTR MaLR -2 465 1 23 86 0 0 chr11 24086633 24086691 -126696862 + AT_rich Low_complexity Low_complexity 1 58 0 199 324 14 0 chr11 24086991 24087062 -126696491 - MIR SINE MIR -2 260 189 203 263 70 0 chr11 24087090 24087147 -126696406 + MIR SINE MIR 81 141 -67 268 286 205 18 chr11 24087809 24087921 -126695632 - MIR SINE MIR -112 150 18 235 321 9 0 chr11 24088071 24088183 -126695370 + (TA)n Simple_repeat Simple_repeat 2 114 0 304 278 10 31 chr11 24088300 24088397 -126695156 + MIR SINE MIR 161 255 -7 21 0 0 0 chr11 24089445 24089466 -126694087 + AT_rich Low_complexity Low_complexity 1 21 0 2634 24 0 0 chr11 24089955 24090251 -126693302 + AluY SINE Alu 1 296 -15 2328 102 0 3 chr11 24091852 24092165 -126691388 + AluSx SINE Alu 1 312 0 1902 236 106 25 chr11 24093222 24093778 -126689775 + MLT1E3 LTR MaLR 5 605 -19 201 351 75 0 chr11 24093871 24093965 -126689588 + MIR SINE MIR 106 206 -56 986 293 0 12 chr11 24095666 24095922 -126687631 + HUERS-P1 LTR ERV1 5966 6218 -45 925 193 80 72 chr11 24095945 24096209 -126687344 + LTR8A LTR ERV1 1 266 -461 5767 116 19 9 chr11 24096239 24097411 -126686142 + L1PA14 LINE L1 4975 6161 0 1539 172 94 50 chr11 24097445 24097829 -126685724 + LTR8A LTR ERV1 274 674 -53 23 68 0 0 chr11 24098492 24098536 -126685017 + AT_rich Low_complexity Low_complexity 1 44 0 27 73 0 0 chr11 24098829 24098884 -126684669 + AT_rich Low_complexity Low_complexity 1 55 0 183 42 0 0 chr11 24099196 24099220 -126684333 + (TTGG)n Simple_repeat Simple_repeat 4 27 0 1993 100 6 70 chr11 24099232 24099561 -126683992 - AluSg SINE Alu -2 308 1 587 300 112 9 chr11 24099666 24099899 -126683654 + MIR SINE MIR 6 262 0 399 268 39 78 chr11 24099916 24100274 -126683279 - HAL1 LINE L1 -922 1585 1242 23 68 0 0 chr11 24101544 24101588 -126681965 + AT_rich Low_complexity Low_complexity 1 44 0 30 59 0 0 chr11 24101713 24101764 -126681789 + AT_rich Low_complexity Low_complexity 1 51 0 2602 174 17 14 chr11 24101764 24102282 -126681271 - L1 LINE L1 -1541 4605 4086 * 4477 184 12 14 chr11 24102279 24102939 -126680614 + L1PB4 LINE L1 4641 5301 -855 351 0 0 0 chr11 24102939 24102978 -126680575 + (CA)n Simple_repeat Simple_repeat 2 40 0 4477 184 12 14 chr11 24102978 24103126 -126680427 + L1PB4 LINE L1 5301 5448 -708 2499 146 26 5 chr11 24103126 24103545 -126680008 - MSTA LTR MaLR 0 428 1 4477 184 12 14 chr11 24103545 24104247 -126679306 + L1PB4 LINE L1 5448 6148 -8 4427 231 16 27 chr11 24155530 24156693 -126626860 - L1P LINE L1 -3284 2862 1712 182 62 31 0 chr11 24158809 24158841 -126624712 + (CCCCCT)n Simple_repeat Simple_repeat 1 33 0 191 289 53 0 chr11 24159217 24159293 -126624260 - MIR SINE MIR -64 198 119 232 267 17 0 chr11 24159319 24159439 -126624114 + (TA)n Simple_repeat Simple_repeat 1 122 0 677 148 0 86 chr11 24159816 24159944 -126623609 - L1PA8A LINE L1 0 6131 6015 367 111 0 0 chr11 24159944 24159998 -126623555 - L1PA8 LINE L1 -119 6053 6000 243 340 82 20 chr11 24160277 24160424 -126623129 - MIR3 SINE MIR -12 196 41 637 263 86 0 chr11 24160670 24160845 -126622708 + MLT1L LTR MaLR 374 563 -52 3624 198 63 47 chr11 24160993 24162230 -126621323 - L1MD1 LINE L1 -2 6634 5378 358 204 129 0 chr11 24162576 24162669 -126620884 - L1MD1 LINE L1 -1217 5323 5219 307 285 79 6 chr11 24162670 24162835 -126620718 + L1M4 LINE L1 4652 4828 -1318 477 194 86 0 chr11 24162850 24162989 -126620564 - L1MD1 LINE L1 -4816 1724 1574 21098 116 23 4 chr11 24163125 24165409 -126618144 - L1PA8A LINE L1 -148 5983 3592 366 23 0 0 chr11 24165409 24165452 -126618101 + (TG)n Simple_repeat Simple_repeat 1 43 0 21098 116 23 4 chr11 24165452 24167124 -126616429 - L1PA8A LINE L1 -2539 3592 1952 1855 172 7 0 chr11 24167667 24167964 -126615589 - AluSx SINE Alu -10 302 4 216 0 0 0 chr11 24168021 24168045 -126615508 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1919 151 0 3 chr11 24168691 24168982 -126614571 - AluSx SINE Alu -11 301 12 4424 41 0 0 chr11 24168998 24169532 -126614021 + L1PA4 LINE L1 5621 6154 -1 22 0 0 0 chr11 24169547 24169569 -126613984 + AT_rich Low_complexity Low_complexity 1 22 0 229 233 0 33 chr11 24170446 24170536 -126613017 - MER103 DNA DNA -75 91 5 739 295 124 7 chr11 24170745 24171043 -126612510 + LTR16C LTR ERVL 159 491 0 298 244 128 1 chr11 24171293 24171430 -126612123 - MER67D LTR ERV1 -29 485 306 1469 172 6 83 chr11 24171477 24171814 -126611739 - MER67D LTR ERV1 -203 311 1 186 356 106 0 chr11 24171905 24172037 -126611516 + MIR SINE MIR 73 218 -44 1191 214 67 36 chr11 24172118 24172449 -126611104 - MLT1B LTR MaLR -49 341 1 228 111 0 0 chr11 24173658 24173694 -126609859 + (CA)n Simple_repeat Simple_repeat 2 37 0 189 263 70 79 chr11 24173746 24173860 -126609693 - MIR SINE MIR -37 225 113 309 312 28 35 chr11 24174046 24174187 -126609366 + MIR SINE MIR 116 255 -7 329 117 17 0 chr11 24175530 24175590 -126607963 + CT-rich Low_complexity Low_complexity 1 61 0 3882 210 46 36 chr11 24175735 24176822 -126606731 - L1MC1 LINE L1 -304 6309 5185 477 0 0 0 chr11 24176822 24176875 -126606678 + (TTA)n Simple_repeat Simple_repeat 2 54 0 3882 210 46 36 chr11 24176875 24177716 -126605837 - L1MC1 LINE L1 -1428 5185 4354 * 5366 183 47 61 chr11 24177712 24178999 -126604554 - L1MC1 LINE L1 -5154 1272 5 672 359 47 10 chr11 24179055 24179356 -126604197 - L1MDb LINE L1 -6086 323 12 228 246 49 41 chr11 24179774 24179896 -126603657 + L1ME4a LINE L1 5959 6081 -40 466 309 50 42 chr11 24179996 24180255 -126603298 + MIR SINE MIR 2 262 0 267 386 68 14 chr11 24181122 24181329 -126602224 + MIR SINE MIR 23 240 -22 275 237 11 0 chr11 24181371 24181464 -126602089 + (TA)n Simple_repeat Simple_repeat 2 95 0 320 344 62 26 chr11 24182362 24182557 -126600996 + MIR SINE MIR 11 212 -50 1234 96 6 6 chr11 24182635 24182813 -126600740 + L1MA1 LINE L1 6121 6298 -4 765 268 22 84 chr11 24182842 24183343 -126600210 + HAL1 LINE L1 1995 2464 -43 1150 204 35 0 chr11 24183343 24183573 -126599980 - L1MB1 LINE L1 -1 6167 5930 22 35 0 0 chr11 24184011 24184040 -126599513 + AT_rich Low_complexity Low_complexity 1 29 0 332 263 263 0 chr11 24184719 24184856 -126598697 - MIR SINE MIR -49 213 41 699 144 44 66 chr11 24185233 24185414 -126598139 + pTR5 LTR ERV1 743 919 -1519 461 16 2 0 chr11 24185629 24185692 -126597861 + pTR5 LTR ERV1 334 2438 0 311 257 129 0 chr11 24185692 24185793 -126597760 - L2 LINE L2 -796 2518 2405 582 204 59 8 chr11 24185931 24186103 -126597450 - L1M4 LINE L1 -2623 3523 3346 1835 297 89 27 chr11 24186776 24187796 -126595757 + L2 LINE L2 2218 3312 -1 22 0 0 0 chr11 24188297 24188319 -126595234 + AT_rich Low_complexity Low_complexity 1 22 0 29 28 0 0 chr11 24188699 24188735 -126594818 + GC_rich Low_complexity Low_complexity 1 36 0 23 33 0 0 chr11 24190629 24190659 -126592894 + AT_rich Low_complexity Low_complexity 1 30 0 204 125 0 0 chr11 24190914 24190946 -126592607 + (TG)n Simple_repeat Simple_repeat 1 32 0 180 339 113 57 chr11 24191009 24191186 -126592367 + MIR3 SINE MIR 19 205 -3 2073 125 3 7 chr11 24192221 24192525 -126591028 + AluSx SINE Alu 1 303 -9 1903 173 47 9 chr11 24195044 24195496 -126588057 - L1MA8 LINE L1 -4 7706 7238 1580 203 3 19 chr11 24195516 24195549 -126588004 - AluJo SINE Alu -6 306 274 2051 121 63 30 chr11 24195549 24195912 -126587641 + THE1C LTR MaLR 1 375 0 1580 203 3 19 chr11 24195912 24196189 -126587364 - AluJo SINE Alu -38 274 1 11221 190 45 10 chr11 24196193 24199163 -126584390 - L1MA8 LINE L1 -467 7243 4171 601 245 50 6 chr11 24199168 24199327 -126584226 + L1M4 LINE L1 2607 2772 -3374 2471 235 47 3 chr11 24199341 24200051 -126583502 + L1M4 LINE L1 3284 4024 -2122 21 0 0 0 chr11 24200051 24200072 -126583481 + AT_rich Low_complexity Low_complexity 1 21 0 311 43 0 22 chr11 24200205 24200251 -126583302 + (TTTTA)n Simple_repeat Simple_repeat 1 45 0 9623 30 16 0 chr11 24200251 24202152 -126581401 - L1PA3 LINE L1 -24 6131 4199 * 13751 28 2 0 chr11 24202117 24203780 -126579773 + L1PA3 LINE L1 2567 4232 -1914 2495 233 31 12 chr11 24203762 24204641 -126578912 - L1MA8 LINE L1 -3365 4200 3306 * 1809 183 47 48 chr11 24204774 24205333 -126578220 - L1 LINE L1 -2895 4670 4113 * 2469 202 22 73 chr11 24205324 24206107 -126577446 - L1 LINE L1 -3810 3755 3036 1278 170 53 82 chr11 24206107 24206425 -126577128 - AluJo SINE Alu -3 309 1 2469 202 22 73 chr11 24206425 24206694 -126576859 - L1 LINE L1 -4529 3036 2755 21 0 0 0 chr11 24206716 24206737 -126576816 + AT_rich Low_complexity Low_complexity 1 21 0 231 61 0 0 chr11 24206783 24206816 -126576737 + (TG)n Simple_repeat Simple_repeat 1 33 0 2120 222 107 0 chr11 24207210 24207724 -126575829 - LTR36 LTR ERV1 -2 609 41 308 176 121 22 chr11 24207728 24207819 -126575734 - LTR36 LTR ERV1 -511 100 1 223 326 53 32 chr11 24208134 24208229 -126575324 + MIR SINE MIR 49 145 -63 1988 136 0 7 chr11 24209044 24209346 -126574207 - AluSx SINE Alu -12 300 1 5774 82 4 11 chr11 24209405 24210166 -126573387 + LTR17 LTR ERV1 1 756 -24 21 0 0 0 chr11 24210348 24210369 -126573184 + AT_rich Low_complexity Low_complexity 1 21 0 195 347 13 47 chr11 24210661 24210811 -126572742 + MIR SINE MIR 68 212 -50 328 308 25 58 chr11 24210894 24211014 -126572539 - L2 LINE L2 -8 3305 3190 1377 239 66 58 chr11 24211897 24212398 -126571155 - MLT1D LTR MaLR 0 505 1 457 281 41 35 chr11 24212934 24213105 -126570448 - MIR SINE MIR -82 180 9 446 18 18 0 chr11 24213615 24213672 -126569881 - L1PA5 LINE L1 -1320 4826 4769 6932 47 1 2 chr11 24213676 24214943 -126568610 + L1PA5 LINE L1 4840 6105 -49 813 185 6 17 chr11 24215081 24215254 -126568299 + AluSg/x SINE Alu 140 310 0 24 67 0 0 chr11 24215691 24215736 -126567817 + AT_rich Low_complexity Low_complexity 1 45 0 186 103 0 0 chr11 24216023 24216052 -126567501 + (TC)n Simple_repeat Simple_repeat 2 30 0 221 339 16 79 chr11 24217571 24217698 -126565855 - MIR3 SINE MIR -75 133 15 25 0 0 0 chr11 24217731 24217756 -126565797 + AT_rich Low_complexity Low_complexity 1 25 0 29 47 0 0 chr11 24217784 24217827 -126565726 + AT_rich Low_complexity Low_complexity 1 43 0 29 0 0 0 chr11 24218631 24218660 -126564893 + AT_rich Low_complexity Low_complexity 1 29 0 187 316 26 40 chr11 24219538 24219614 -126563939 - MIR SINE MIR -186 76 2 388 235 134 8 chr11 24219634 24219753 -126563800 + MER45A DNA AcHobo 44 177 -1 214 386 71 33 chr11 24220905 24221089 -126562464 - L2 LINE L2 -251 3062 2872 1186 96 56 20 chr11 24221228 24221426 -126562127 - L1PA8 LINE L1 -10 6162 5958 22 35 0 0 chr11 24221777 24221806 -126561747 + AT_rich Low_complexity Low_complexity 1 29 0 184 304 120 54 chr11 24222087 24222179 -126561374 - L2 LINE L2 -9 3263 3166 1306 276 59 52 chr11 24222285 24222821 -126560732 - MLT1F LTR MaLR -3 552 1 233 245 16 0 chr11 24222823 24222892 -126560661 - MLT1F-int LTR MaLR -2 1727 1306 287 210 108 132 chr11 24222967 24223134 -126560419 - MLT1F-int LTR MaLR -173 1198 1036 45 19 0 0 chr11 24223407 24223459 -126560094 + AT_rich Low_complexity Low_complexity 1 52 0 51 31 0 0 chr11 24225019 24225084 -126558469 + AT_rich Low_complexity Low_complexity 1 65 0 584 211 53 70 chr11 24225210 24225381 -126558172 - MLT1A2 LTR MaLR -206 168 1 522 341 73 18 chr11 24225666 24225939 -126557614 + L2 LINE L2 2654 2941 -373 342 115 0 0 chr11 24226410 24226471 -126557082 + (TC)n Simple_repeat Simple_repeat 2 62 0 300 27 0 0 chr11 24226471 24226508 -126557045 + (CA)n Simple_repeat Simple_repeat 1 37 0 223 332 85 40 chr11 24226852 24227051 -126556502 + L3 LINE CR1 1011 1218 -359 193 326 148 0 chr11 24229128 24229263 -126554290 + MIR SINE MIR 77 231 -31 28 0 0 0 chr11 24229498 24229526 -126554027 + AT_rich Low_complexity Low_complexity 1 28 0 238 123 35 0 chr11 24230501 24230558 -126552995 + (TA)n Simple_repeat Simple_repeat 1 59 0 25 0 0 0 chr11 24230745 24230770 -126552783 + AT_rich Low_complexity Low_complexity 1 25 0 933 246 142 28 chr11 24230793 24231110 -126552443 - MLT1A2 LTR MaLR -4 370 18 3127 169 21 14 chr11 24231627 24232255 -126551298 - L1MA8 LINE L1 0 6291 5660 23 0 0 0 chr11 24232323 24232346 -126551207 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr11 24232705 24232728 -126550825 + AT_rich Low_complexity Low_complexity 1 23 0 192 388 0 0 chr11 24233613 24233680 -126549873 + MIR SINE MIR 18 84 -178 591 243 81 24 chr11 24233692 24233902 -126549651 + L1ME2 LINE L1 3906 4127 -2019 * 647 242 88 56 chr11 24233898 24234394 -126549159 + L1ME2 LINE L1 4996 5515 -647 384 194 0 75 chr11 24234438 24234531 -126549022 + MER58A DNA MER1_type 47 132 0 245 290 0 0 chr11 24234535 24234597 -126548956 + MER58A DNA MER1_type 162 223 -1 1576 252 76 26 chr11 24234612 24235215 -126548338 + L1ME2 LINE L1 5522 6154 -10 1677 185 79 5 chr11 24236390 24236768 -126546785 + L1PA13 LINE L1 2353 2758 -3388 5892 190 40 15 chr11 24236768 24238790 -126544763 + L1PA13 LINE L1 4099 6162 -1 237 224 15 30 chr11 24239825 24239892 -126543661 + (CATATA)n Simple_repeat Simple_repeat 3 68 0 714 283 136 18 chr11 24239929 24240201 -126543352 + L2 LINE L2 2998 3301 -12 3279 164 39 8 chr11 24240228 24240851 -126542702 + MER73 LTR ERVL 1 642 -2 186 43 0 0 chr11 24241194 24241217 -126542336 + (A)n Simple_repeat Simple_repeat 1 23 0 782 173 0 0 chr11 24241847 24241997 -126541556 + L1 LINE L1 3259 3408 -2738 1901 164 7 0 chr11 24242596 24242900 -126540653 - AluSx SINE Alu -6 306 1 2305 82 20 0 chr11 24243561 24243864 -126539689 + AluY SINE Alu 1 309 -2 183 295 16 108 chr11 24245404 24245533 -126538020 - L2 LINE L2 -237 3035 2919 354 23 0 0 chr11 24246784 24246827 -126536726 + (CA)n Simple_repeat Simple_repeat 2 44 0 30 0 0 0 chr11 24247545 24247575 -126535978 + AT_rich Low_complexity Low_complexity 1 30 0 44 46 0 0 chr11 24247791 24247856 -126535697 + AT_rich Low_complexity Low_complexity 1 65 0 185 333 54 21 chr11 24248054 24248147 -126535406 + L2 LINE L2 2443 2538 -776 36 87 0 0 chr11 24248307 24248399 -126535154 + AT_rich Low_complexity Low_complexity 1 92 0 437 243 75 29 chr11 24248540 24248713 -126534840 + MIR SINE MIR 82 262 0 1033 72 7 33 chr11 24250168 24250321 -126533232 + L1PA7 LINE L1 6006 6154 0 566 197 0 0 chr11 24250889 24251016 -126532537 + L1MA5 LINE L1 3032 3158 -2988 4696 163 31 27 chr11 24251016 24251916 -126531637 + L1MA5 LINE L1 5397 6300 0 714 277 78 3 chr11 24251919 24252291 -126531262 - MER69 DNA AcHobo -117 2409 2010 450 353 68 4 chr11 24252289 24252538 -126531015 - MER69 DNA AcHobo -1958 568 304 * 1052 239 5 69 chr11 24252727 24253103 -126530450 - MLT1A2 LTR MaLR 0 374 23 348 24 0 0 chr11 24253973 24254014 -126529539 + (CA)n Simple_repeat Simple_repeat 2 42 0 185 233 123 14 chr11 24254423 24254496 -126529057 + MIR SINE MIR 38 118 -90 181 361 69 0 chr11 24255249 24255321 -126528232 - L2 LINE L2 -13 3300 3224 24 85 0 0 chr11 24256174 24256233 -126527320 + AT_rich Low_complexity Low_complexity 1 59 0 411 162 9 81 chr11 24257402 24257513 -126526040 + L1M1 LINE L1 16 118 -7447 * 11505 166 15 5 chr11 24257512 24259977 -126523576 + L1M1 LINE L1 445 3035 -4530 188 301 72 12 chr11 24259997 24260080 -126523473 + L2 LINE L2 3226 3313 0 233 297 62 0 chr11 24260145 24260209 -126523344 - MER91C DNA MER1_type -42 98 31 275 299 22 66 chr11 24260235 24260372 -126523181 + L2 LINE L2 3182 3312 -1 2687 85 3 0 chr11 24260895 24261249 -126522304 + THE1A LTR MaLR 1 355 0 2184 242 64 22 chr11 24261717 24262313 -126521240 + MLT1E2 LTR MaLR 6 626 0 186 219 96 41 chr11 24262357 24262407 -126521146 - L2 LINE L2 -83 3230 3173 966 228 31 97 chr11 24262407 24262798 -126520755 - MLT1A1 LTR MaLR 0 365 1 186 219 96 41 chr11 24262798 24262820 -126520733 - L2 LINE L2 -140 3173 3154 1752 262 111 32 chr11 24262849 24263664 -126519889 + L1MDa LINE L1 1 1112 -5428 297 370 8 0 chr11 24263931 24264058 -126519495 - MER94 DNA DNA -6 128 1 938 159 22 6 chr11 24264674 24264856 -126518697 - L1MA10 LINE L1 -8 6326 6142 950 356 14 43 chr11 24264861 24265488 -126518065 + L1PA16 LINE L1 789 1397 -6177 263 342 30 13 chr11 24265509 24265719 -126517834 + L1PA16 LINE L1 2084 2303 -5271 841 246 14 100 chr11 24265937 24266286 -126517267 + L1PA16 LINE L1 2171 2489 -5092 * 4706 181 41 27 chr11 24266282 24267722 -126515831 + L1PA16 LINE L1 6147 7604 0 671 180 0 0 chr11 24267727 24267849 -126515704 - L1MB1 LINE L1 -44 6145 6024 2498 184 15 29 chr11 24267853 24268161 -126515392 + L1MB1 LINE L1 5343 5643 -525 2104 124 53 28 chr11 24268161 24268516 -126515037 - THE1B LTR MaLR 0 364 1 2498 184 15 29 chr11 24268516 24268729 -126514824 + L1MB1 LINE L1 5643 5857 -311 240 282 13 64 chr11 24269888 24269966 -126513587 - L2 LINE L2 -8 3305 3232 1907 136 3 32 chr11 24270110 24270420 -126513133 + AluSx SINE Alu 1 301 -11 2130 159 78 8 chr11 24270992 24271388 -126512165 - MSTA LTR MaLR -4 424 1 293 377 48 26 chr11 24271576 24271807 -126511746 + MIR SINE MIR 23 258 -4 180 345 12 36 chr11 24272347 24272431 -126511122 - MIR3 SINE MIR -14 194 113 1447 274 25 43 chr11 24273719 24274273 -126509280 + L1MC4 LINE L1 6467 7010 -1032 1343 216 53 58 chr11 24274274 24274825 -126508728 + L1MC4 LINE L1 7180 7715 -93 305 270 82 31 chr11 24274983 24275179 -126508374 + L1M4 LINE L1 3115 3320 -2826 419 318 88 9 chr11 24275352 24275773 -126507780 + L1M4 LINE L1 3502 3955 -2191 2141 115 0 13 chr11 24275801 24276113 -126507440 - AluSx SINE Alu -4 308 1 300 289 78 64 chr11 24276166 24276329 -126507224 + L1M4 LINE L1 4030 4198 -1948 2258 58 45 0 chr11 24276329 24276620 -126506933 - AluY SINE Alu -7 304 1 300 289 78 64 chr11 24276620 24276674 -126506879 + L1M4 LINE L1 4198 4250 -1896 214 226 48 107 chr11 24277016 24277100 -126506453 + MIR SINE MIR 122 200 -62 3895 107 98 107 chr11 24278156 24279535 -126504018 + pTR5 LTR ERV1 743 2438 0 182 329 26 13 chr11 24279538 24279614 -126503939 + MIR3 SINE MIR 121 197 -11 313 204 0 146 chr11 24280216 24280319 -126503234 + MER21B LTR ERV1 1 88 -775 1612 286 102 46 chr11 24280343 24281088 -126502465 + MER21B LTR ERV1 17 803 -60 624 341 121 38 chr11 24281380 24281885 -126501668 + L2 LINE L2 2348 2894 -420 231 167 0 0 chr11 24282233 24282275 -126501278 + (TA)n Simple_repeat Simple_repeat 1 42 0 202 178 68 0 chr11 24282307 24282380 -126501173 + (TA)n Simple_repeat Simple_repeat 1 78 0 296 322 87 48 chr11 24282571 24282779 -126500774 + MIR SINE MIR 5 220 -42 753 282 8 43 chr11 24283630 24283864 -126499689 + MER110-int LTR ERV1 3687 3912 -735 351 0 0 0 chr11 24283868 24283907 -126499646 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 7254 56 0 1 chr11 24283908 24285600 -126497953 + L1PA5 LINE L1 4469 6154 0 843 273 36 25 chr11 24285666 24286000 -126497553 + MER110A LTR ERV1 176 491 0 25 31 0 0 chr11 24286960 24286992 -126496561 + AT_rich Low_complexity Low_complexity 1 32 0 5015 203 64 3 chr11 24288986 24290049 -126493504 - L1MA1 LINE L1 0 7721 6584 1419 125 19 0 chr11 24290051 24290259 -126493294 - AluSg/x SINE Alu -8 304 93 553 132 0 0 chr11 24290259 24290335 -126493218 + AluS SINE Alu 17 92 -221 8864 195 28 7 chr11 24290335 24291692 -126491861 - L1MA1 LINE L1 -976 6589 5178 1995 136 74 8 chr11 24291692 24292044 -126491509 - THE1C LTR MaLR 0 375 1 8864 195 28 7 chr11 24292044 24292635 -126490918 - L1MA1 LINE L1 -2387 5178 4601 1538 189 112 50 chr11 24292640 24292817 -126490736 + MSTA LTR MaLR 1 166 -262 2379 73 0 3 chr11 24292817 24293119 -126490434 + AluY SINE Alu 1 301 -10 1538 189 112 50 chr11 24293119 24293344 -126490209 + MSTA LTR MaLR 166 428 0 7209 157 107 41 chr11 24293346 24294826 -126488727 + MSTA-int LTR MaLR 3 1580 0 1761 168 127 21 chr11 24294826 24295213 -126488340 + MSTA LTR MaLR 1 428 0 455 196 0 0 chr11 24295213 24295320 -126488233 - L1MA1 LINE L1 -2975 4590 4484 753 262 111 21 chr11 24295444 24295723 -126487830 + MSTA LTR MaLR 125 428 0 3216 220 37 31 chr11 24295724 24296966 -126486587 - L1MA1 LINE L1 -2975 4590 3347 6781 71 0 0 chr11 24296971 24298643 -126484910 - L1PA6 LINE L1 -4 6150 4473 3785 67 2 2 chr11 24298646 24299155 -126484398 + L1P LINE L1 3164 3672 -2474 1607 121 7 28 chr11 24299151 24299440 -126484113 + L1M1 LINE L1 2492 2774 -4791 * 2892 228 52 51 chr11 24299431 24300212 -126483341 - L1MA1 LINE L1 -6767 798 17 231 85 0 21 chr11 24300710 24300757 -126482796 + LTR66 LTR ERVL 394 439 -171 351 174 8 41 chr11 24300821 24300942 -126482611 + (TA)n Simple_repeat Simple_repeat 1 117 0 241 133 0 0 chr11 24300975 24301020 -126482533 + LTR66 LTR ERVL 394 438 -172 * 264 172 52 0 chr11 24300980 24301038 -126482515 - LTR66 LTR ERVL -172 438 378 1001 128 67 17 chr11 24301076 24301196 -126482357 + L1PB1 LINE L1 5833 5966 -185 1800 108 0 4 chr11 24301196 24301445 -126482108 + AluSg SINE Alu 7 254 -56 1001 128 67 17 chr11 24301445 24301503 -126482050 + L1PB1 LINE L1 5966 6020 -131 180 0 0 0 chr11 24301505 24301525 -126482028 + (TAAA)n Simple_repeat Simple_repeat 4 23 0 232 91 45 0 chr11 24301821 24301865 -126481688 + (TA)n Simple_repeat Simple_repeat 1 46 0 232 172 0 0 chr11 24301889 24301947 -126481606 + LTR66 LTR ERVL 404 461 -149 1503 67 5 0 chr11 24301947 24302142 -126481411 - L1P5 LINE L1 -395 5756 5561 2262 11 0 8 chr11 24302640 24302903 -126480650 + AluY SINE Alu 39 299 -12 692 263 60 29 chr11 24303255 24303571 -126479982 + L1M4 LINE L1 2372 2697 -3449 327 266 46 0 chr11 24303701 24303810 -126479743 + L1M4 LINE L1 4357 4470 -1676 283 263 79 68 chr11 24304041 24304231 -126479322 + L1M4 LINE L1 4787 4978 -1168 2049 120 7 3 chr11 24305020 24305328 -126478225 - AluSx SINE Alu -3 309 1 22 0 0 0 chr11 24305982 24306004 -126477549 + AT_rich Low_complexity Low_complexity 1 22 0 10437 229 66 19 chr11 24306128 24309323 -126474230 + L1MA7 LINE L1 2117 5160 -1131 1207 225 110 22 chr11 24309323 24309687 -126473866 + MSTD LTR MaLR 1 396 0 10437 229 66 19 chr11 24309687 24309982 -126473571 + L1MA7 LINE L1 5160 5440 -851 1094 204 9 0 chr11 24309982 24310212 -126473341 - MER46A DNA MER2_type 0 236 5 10437 229 66 19 chr11 24310212 24310711 -126472842 + L1MA7 LINE L1 5440 6291 0 283 374 74 0 chr11 24311042 24311232 -126472321 + MIR SINE MIR 45 248 -14 344 198 0 12 chr11 24312441 24312527 -126471026 + GA-rich Low_complexity Low_complexity 3 87 0 1952 72 4 4 chr11 24312542 24312826 -126470727 - AluY SINE Alu 0 317 34 205 298 24 0 chr11 24313143 24313227 -126470326 + (TA)n Simple_repeat Simple_repeat 1 86 0 228 295 0 21 chr11 24313236 24313331 -126470222 + GA-rich Low_complexity Low_complexity 3 95 0 251 277 185 31 chr11 24313340 24313470 -126470083 - MIR3 SINE MIR -28 180 31 25 0 0 0 chr11 24314140 24314165 -126469388 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr11 24314393 24314415 -126469138 + AT_rich Low_complexity Low_complexity 1 22 0 5996 95 33 8 chr11 24314473 24315356 -126468197 - L1PA10 LINE L1 -4 6164 5260 5065 158 6 81 chr11 24315355 24316510 -126467043 + L1P LINE L1 2585 3653 -2493 * 4644 146 32 9 chr11 24316519 24317335 -126466218 + L1P LINE L1 4365 5199 -947 26 30 0 0 chr11 24317527 24317560 -126465993 + AT_rich Low_complexity Low_complexity 1 33 0 1403 214 13 22 chr11 24317577 24317890 -126465663 - AluJo SINE Alu -2 310 1 362 352 141 0 chr11 24318511 24318724 -126464829 - MIR SINE MIR -14 248 6 227 204 0 0 chr11 24319364 24319413 -126464140 + (TAAA)n Simple_repeat Simple_repeat 4 52 0 191 235 15 73 chr11 24319468 24319536 -126464017 - L2 LINE L2 -2 3311 3248 1668 184 0 0 chr11 24319952 24320229 -126463324 + AluJo SINE Alu 10 286 -26 380 246 45 0 chr11 24320297 24320407 -126463146 - MER103 DNA DNA -49 117 3 23 0 0 0 chr11 24320561 24320584 -126462969 + AT_rich Low_complexity Low_complexity 1 23 0 29 28 0 0 chr11 24321003 24321039 -126462514 + AT_rich Low_complexity Low_complexity 1 36 0 2232 110 0 0 chr11 24321868 24322178 -126461375 - AluSg SINE Alu 0 310 1 539 142 62 9 chr11 24322277 24322390 -126461163 - L1MA4 LINE L1 -6 6294 6176 377 262 138 37 chr11 24322411 24323115 -126460438 - L1ME3 LINE L1 -213 5951 5139 1378 256 42 26 chr11 24323120 24323573 -126459980 - MER65C LTR ERV1 -1 460 1 322 270 45 0 chr11 24324108 24324197 -126459356 + L1MC4 LINE L1 6613 6705 -1337 207 179 45 0 chr11 24324198 24324265 -126459288 + (TA)n Simple_repeat Simple_repeat 1 70 0 250 226 20 88 chr11 24324363 24324465 -126459088 + MER5B DNA MER1_type 83 177 -1 2173 309 40 14 chr11 24324485 24325178 -126458375 + L1M4b LINE L1 18 728 -6131 1809 233 14 21 chr11 24325196 24325630 -126457923 + L1M4b LINE L1 942 1372 -5487 24 67 0 0 chr11 24325914 24325959 -126457594 + AT_rich Low_complexity Low_complexity 1 45 0 225 343 15 0 chr11 24326257 24326324 -126457229 - L2 LINE L2 -2 3311 3244 414 323 48 12 chr11 24326398 24326565 -126456988 - MIR SINE MIR -82 180 8 2098 107 41 0 chr11 24327433 24327724 -126455829 - AluSx SINE Alu -9 303 1 53 73 0 0 chr11 24328018 24328127 -126455426 + AT_rich Low_complexity Low_complexity 1 109 0 290 306 118 21 chr11 24328232 24328418 -126455135 + MIR SINE MIR 49 252 -10 22 80 0 0 chr11 24328477 24328527 -126455026 + AT_rich Low_complexity Low_complexity 1 50 0 515 302 145 44 chr11 24328914 24329731 -126453822 - L2 LINE L2 -2 3311 2418 1098 257 10 0 chr11 24330509 24330801 -126452752 + L1 LINE L1 2755 3049 -3097 6042 253 75 32 chr11 24330909 24331543 -126452010 + L1M4b LINE L1 1595 2200 -4757 1729 113 17 66 chr11 24331543 24331844 -126451709 + AluSq SINE Alu 28 313 0 6042 253 75 32 chr11 24331844 24332301 -126451252 + L1M4b LINE L1 2200 2636 -4321 287 19 37 37 chr11 24332301 24332355 -126451198 + (TA)n Simple_repeat Simple_repeat 1 54 0 6042 253 75 32 chr11 24332355 24335256 -126448297 + L1M4b LINE L1 2636 5759 -1198 426 252 9 0 chr11 24335284 24335395 -126448158 + L1M4b LINE L1 5943 6054 -903 601 323 11 48 chr11 24336574 24336843 -126446710 + MIR SINE MIR 3 261 -1 198 71 0 0 chr11 24337044 24337072 -126446481 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 256 113 113 0 chr11 24337072 24337125 -126446428 - L1MC2 LINE L1 -14 6330 6272 786 209 53 5 chr11 24337128 24337315 -126446238 - L1MCa LINE L1 -6224 202 7 352 278 0 0 chr11 24337571 24337668 -126445885 - MER117 DNA MER1_type -99 98 2 423 225 26 10 chr11 24337779 24337908 -126445645 - MLT1J1 LTR MaLR 0 489 349 25 31 0 0 chr11 24338484 24338516 -126445037 + AT_rich Low_complexity Low_complexity 1 32 0 241 240 210 20 chr11 24339214 24339314 -126444239 + MIR SINE MIR 23 141 -121 201 321 12 37 chr11 24339424 24339437 -126444116 - L2 LINE L2 -1 3312 3300 1199 166 78 108 chr11 24339437 24339901 -126443652 - LTR7 LTR ERV1 0 450 1 201 321 12 37 chr11 24339901 24339968 -126443585 - L2 LINE L2 -13 3300 3234 1810 143 7 7 chr11 24339992 24340292 -126443261 + AluJb SINE Alu 13 312 0 260 265 72 72 chr11 24340393 24340476 -126443077 - MIR SINE MIR -173 89 7 1163 238 24 62 chr11 24340731 24341071 -126442482 - MLT1E2 LTR MaLR -4 622 296 383 240 10 10 chr11 24341286 24341386 -126442167 + L1PA15-16 LINE L1 1474 1573 -5276 * 854 211 46 48 chr11 24341374 24341650 -126441903 + L1PB4 LINE L1 1347 1622 -5227 1677 176 0 35 chr11 24341650 24341968 -126441585 + AluJb SINE Alu 1 307 -5 854 211 46 48 chr11 24341968 24342189 -126441364 + L1PB4 LINE L1 1622 1932 -4917 10225 187 27 91 chr11 24342203 24343924 -126439629 + L1PB4 LINE L1 3001 4831 -2028 2007 177 3 20 chr11 24343924 24344268 -126439285 - MER1B DNA MER1_type 0 339 2 10225 187 27 91 chr11 24344268 24346344 -126437209 + L1PB4 LINE L1 4831 6859 0 1384 170 117 11 chr11 24346457 24346739 -126436814 + AluJb SINE Alu 1 312 0 703 264 7 0 chr11 24346803 24346951 -126436602 - MLT1F1 LTR MaLR -90 477 329 32 67 0 0 chr11 24347600 24347660 -126435893 + AT_rich Low_complexity Low_complexity 1 60 0 21 57 0 0 chr11 24348673 24348708 -126434845 + AT_rich Low_complexity Low_complexity 1 35 0 30 27 0 0 chr11 24348735 24348772 -126434781 + AT_rich Low_complexity Low_complexity 1 37 0 180 180 0 54 chr11 24348887 24348998 -126434555 + (TATAG)n Simple_repeat Simple_repeat 1 105 0 277 326 0 54 chr11 24349125 24349254 -126434299 + L1MB1 LINE L1 1945 2066 -5420 1063 263 64 10 chr11 24349280 24350080 -126433473 + L1MB1 LINE L1 3021 3870 -3695 598 147 0 0 chr11 24350106 24350201 -126433352 + L1MB1 LINE L1 5486 5580 -1985 2831 192 27 2 chr11 24350222 24350815 -126432738 + L1MB1 LINE L1 6980 7587 0 281 271 12 0 chr11 24351115 24351200 -126432353 + (TA)n Simple_repeat Simple_repeat 2 87 0 744 240 86 57 chr11 24351366 24351404 -126432149 + MLT1B LTR MaLR 1 36 -354 2024 125 10 0 chr11 24351404 24351699 -126431854 - AluSq SINE Alu -13 300 3 744 240 86 57 chr11 24351699 24351939 -126431614 + MLT1B LTR MaLR 36 287 -103 409 271 0 19 chr11 24352422 24352529 -126431024 - MLT1K LTR MaLR -2 586 482 24 32 0 0 chr11 24353179 24353210 -126430343 + AT_rich Low_complexity Low_complexity 1 31 0 21 57 0 0 chr11 24353274 24353309 -126430244 + AT_rich Low_complexity Low_complexity 1 35 0 1830 237 78 9 chr11 24354514 24354961 -126428592 - ERVL-B1 LTR ERVL -5285 479 2 1029 231 218 49 chr11 24354962 24355407 -126428146 - MLT2B1 LTR ERVL 0 520 1 2496 47 30 0 chr11 24356148 24356449 -126427104 - AluY SINE Alu -1 310 1 185 0 0 39 chr11 24359287 24359313 -126424240 + (TTTTA)n Simple_repeat Simple_repeat 3 27 0 2466 73 0 0 chr11 24359313 24359630 -126423923 - L1PA7 LINE L1 -16 6138 5822 2678 43 0 46 chr11 24359630 24359945 -126423608 + L1P3 LINE L1 5475 5774 -380 2235 107 3 0 chr11 24359945 24360255 -126423298 + AluY SINE Alu 1 311 0 2678 43 0 46 chr11 24360255 24360290 -126423263 + L1P3 LINE L1 5774 5809 -345 2410 91 0 0 chr11 24361389 24361698 -126421855 - AluY SINE Alu -2 309 1 251 159 58 0 chr11 24361729 24361798 -126421755 + (TA)n Simple_repeat Simple_repeat 1 73 0 1353 221 54 96 chr11 24361894 24362596 -126420957 - MER61E LTR ERV1 0 779 2 889 263 90 74 chr11 24363797 24364565 -126418988 + L1M4 LINE L1 719 1498 -5044 2462 257 49 37 chr11 24364568 24365321 -126418232 + L1M4 LINE L1 2389 3101 -3543 2221 116 3 0 chr11 24365321 24365624 -126417929 + AluSq SINE Alu 3 306 -7 2462 257 49 37 chr11 24365624 24366231 -126417322 + L1M4 LINE L1 3101 3699 -2945 235 308 39 0 chr11 24366542 24366620 -126416933 - MLT1J LTR MaLR -9 502 422 463 284 154 12 chr11 24366634 24366796 -126416757 - MER63A DNA MER1_type -25 185 1 530 232 28 109 chr11 24367513 24367651 -126415902 + MLT1D LTR MaLR 1 118 -387 2012 130 75 20 chr11 24367651 24367996 -126415557 + THE1B LTR MaLR 1 364 0 530 232 28 109 chr11 24367996 24368068 -126415485 + MLT1D LTR MaLR 118 194 -311 541 264 62 65 chr11 24368083 24368390 -126415163 + MER21B LTR ERV1 408 713 -150 250 228 8 39 chr11 24368805 24368932 -126414621 + T-rich Low_complexity Low_complexity 3 125 0 247 223 0 32 chr11 24370226 24370320 -126413233 + (CATATA)n Simple_repeat Simple_repeat 2 92 0 547 230 31 50 chr11 24370430 24370591 -126412962 + MER90 LTR ERV1 3 160 -415 2213 106 3 0 chr11 24370716 24371017 -126412536 - AluSp SINE Alu -11 302 1 224 381 60 8 chr11 24371965 24372099 -126411454 + MIR SINE MIR 17 157 -105 236 310 55 55 chr11 24372211 24372356 -126411197 - L2 LINE L2 -341 2973 2829 906 283 175 31 chr11 24372438 24373187 -126410366 + Charlie2 DNA MER1_type 1927 2783 -79 1662 124 124 0 chr11 24373250 24373517 -126410036 + AluSx SINE Alu 1 300 -2 3294 179 75 8 chr11 24373517 24374233 -126409320 - LTR1B LTR ERV1 -6 779 1 44 63 0 0 chr11 24374517 24374596 -126408957 + AT_rich Low_complexity Low_complexity 1 79 0 216 352 86 0 chr11 24375077 24375182 -126408371 - L2 LINE L2 -56 3216 3103 429 243 68 57 chr11 24375654 24375831 -126407722 + L1MEc LINE L1 14 192 -6204 23 0 0 0 chr11 24375880 24375903 -126407650 + AT_rich Low_complexity Low_complexity 1 23 0 379 257 81 14 chr11 24375904 24376052 -126407501 + L1MEc LINE L1 1875 2032 -4364 295 294 77 21 chr11 24376145 24376288 -126407265 + L1MEc LINE L1 2051 2201 -4195 465 245 182 19 chr11 24376335 24376653 -126406900 + L1MEc LINE L1 3222 3591 -2624 251 241 84 36 chr11 24377046 24377129 -126406424 - LTR33 LTR ERVL -136 385 299 431 229 109 70 chr11 24377470 24377671 -126405882 - MIR SINE MIR -24 238 30 392 338 15 8 chr11 24378367 24378500 -126405053 - MIR SINE MIR -105 157 24 206 239 22 0 chr11 24378518 24378564 -126404989 - MIR SINE MIR -171 91 45 493 315 123 0 chr11 24378661 24378823 -126404730 - MIR SINE MIR -13 249 68 224 173 80 0 chr11 24378921 24378996 -126404557 + (TTAAA)n Simple_repeat Simple_repeat 3 83 0 1451 256 77 60 chr11 24379048 24379583 -126403970 + MER90 LTR ERV1 70 613 -1 281 317 24 32 chr11 24380745 24380868 -126402685 - MLT1K LTR MaLR -368 220 99 195 100 0 0 chr11 24381008 24381038 -126402515 + (TA)n Simple_repeat Simple_repeat 2 31 0 484 28 14 42 chr11 24381096 24381168 -126402385 - L1PA8 LINE L1 -6 6166 6097 31 0 0 0 chr11 24381201 24381232 -126402321 + AT_rich Low_complexity Low_complexity 1 31 0 185 287 253 0 chr11 24382042 24382129 -126401424 + MIR SINE MIR 31 139 -69 391 293 43 30 chr11 24382137 24382301 -126401252 + MIR SINE MIR 49 214 -48 190 222 89 56 chr11 24382353 24382443 -126401110 + L2 LINE L2 3021 3113 -200 373 214 38 61 chr11 24382524 24382655 -126400898 - MER97a DNA MER1_type? -303 591 464 310 308 60 26 chr11 24383027 24383144 -126400409 + MIR3 SINE MIR 5 125 -83 1978 136 7 0 chr11 24383592 24383886 -126399667 + AluSx SINE Alu 1 296 -16 195 360 72 16 chr11 24384276 24384401 -126399152 + MIR SINE MIR 26 157 -105 356 141 0 28 chr11 24384956 24385027 -126398526 + (TATATG)n Simple_repeat Simple_repeat 6 74 0 261 209 0 0 chr11 24385991 24386058 -126397495 + CT-rich Low_complexity Low_complexity 2 68 0 467 284 133 34 chr11 24386180 24386953 -126396600 - L1MCc LINE L1 -4892 1531 1159 2020 166 145 30 chr11 24388236 24388741 -126394812 - LTR49 LTR ERV1 -32 563 1 250 172 69 58 chr11 24388931 24389018 -126394535 + L1M4 LINE L1 4121 4208 -1938 1480 164 26 11 chr11 24389089 24389357 -126394196 - MER4D LTR ERV1 0 903 632 1219 197 15 42 chr11 24389357 24389523 -126394030 - LTR8 LTR ERV1 0 691 533 1889 180 80 10 chr11 24389523 24389923 -126393630 - MSTA LTR MaLR 0 428 1 1219 197 15 42 chr11 24389923 24390015 -126393538 - LTR8 LTR ERV1 -158 533 440 1900 127 16 37 chr11 24390030 24390352 -126393201 - LTR8 LTR ERV1 -376 315 1 * 3381 166 52 5 chr11 24390352 24390961 -126392592 - MER4D LTR ERV1 -265 638 1 29663 118 15 62 chr11 24391363 24397828 -126385725 - L1PA7 LINE L1 0 6154 12 2021 120 9 25 chr11 24397847 24398164 -126385389 - AluSx SINE Alu 0 312 1 22 35 0 0 chr11 24398938 24398967 -126384586 + AT_rich Low_complexity Low_complexity 1 29 0 1678 189 0 7 chr11 24399405 24399712 -126383841 - AluJo SINE Alu -7 305 1 235 335 95 22 chr11 24399734 24399913 -126383640 + L3 LINE CR1 1386 1577 0 2381 97 0 0 chr11 24403995 24404304 -126379249 - AluSc SINE Alu 0 309 1 288 332 118 35 chr11 24405139 24405368 -126378185 + MIR SINE MIR 15 262 0 214 288 0 0 chr11 24405739 24405798 -126377755 + T-rich Low_complexity Low_complexity 1 59 0 832 167 13 0 chr11 24405832 24405982 -126377571 + MER67D LTR ERV1 1 152 -362 249 313 12 0 chr11 24406020 24406100 -126377453 - AluSc SINE Alu -21 278 198 24 32 0 0 chr11 24406538 24406569 -126376984 + AT_rich Low_complexity Low_complexity 1 31 0 326 299 34 26 chr11 24406805 24406922 -126376631 - MIR SINE MIR -44 218 101 229 247 0 65 chr11 24406984 24407061 -126376492 + CT-rich Low_complexity Low_complexity 5 76 0 31 44 0 0 chr11 24407363 24407408 -126376145 + AT_rich Low_complexity Low_complexity 1 45 0 25 51 0 0 chr11 24407806 24407845 -126375708 + AT_rich Low_complexity Low_complexity 1 39 0 2017 122 0 56 chr11 24408298 24408617 -126374936 - AluSx SINE Alu -11 301 1 235 360 26 33 chr11 24408794 24408947 -126374606 - MIR SINE MIR -34 228 77 322 358 69 51 chr11 24408949 24409340 -126374213 - MLT1J LTR MaLR -2 509 112 390 21 0 0 chr11 24409492 24409539 -126374014 + (TG)n Simple_repeat Simple_repeat 2 48 0 180 0 0 0 chr11 24409915 24409935 -126373618 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 2059 108 0 0 chr11 24409935 24410212 -126373341 - AluSg SINE Alu -33 277 1 21 89 0 0 chr11 24410338 24410394 -126373159 + AT_rich Low_complexity Low_complexity 1 56 0 206 313 45 0 chr11 24410630 24410697 -126372856 + L2 LINE L2 3244 3313 0 230 267 0 0 chr11 24411515 24411575 -126371978 - L1ME1 LINE L1 -67 6099 6040 456 330 94 0 chr11 24412102 24412314 -126371239 + MIR SINE MIR 2 233 -29 351 0 0 0 chr11 24412625 24412664 -126370889 + (TG)n Simple_repeat Simple_repeat 2 40 0 757 236 113 8 chr11 24413030 24413421 -126370132 + L1MC/D LINE L1 5100 5526 -743 738 317 49 13 chr11 24413425 24413816 -126369737 - L1MDa LINE L1 -3394 3146 2742 1743 159 3 14 chr11 24413816 24414147 -126369406 - AluSx SINE Alu 0 328 1 4494 197 70 20 chr11 24414261 24415282 -126368271 - L1MC1 LINE L1 -6 6327 5256 1490 207 13 13 chr11 24415302 24415602 -126367951 - AluJb SINE Alu -8 304 5 353 156 0 0 chr11 24415604 24415668 -126367885 + L1MA5A LINE L1 6228 6291 -6 868 158 39 47 chr11 24415731 24415965 -126367588 - L1MA5A LINE L1 -36 6261 6030 606 272 10 36 chr11 24415961 24416156 -126367397 - L1MC1 LINE L1 -922 5224 5035 * 1015 268 17 22 chr11 24416160 24416537 -126367016 - L1MDa LINE L1 -3932 2608 2235 787 225 109 14 chr11 24416730 24417006 -126366547 - L1MDa LINE L1 -4402 2138 1837 350 250 10 0 chr11 24417006 24417110 -126366443 + (TA)n Simple_repeat Simple_repeat 1 105 0 1453 243 93 47 chr11 24417110 24417139 -126366414 + L1ME2 LINE L1 5291 5317 -847 2529 165 26 4 chr11 24417139 24417631 -126365922 + L1MA4 LINE L1 5793 6295 -5 1453 243 93 47 chr11 24417631 24418238 -126365315 + L1ME2 LINE L1 5317 5956 -208 240 228 0 0 chr11 24418319 24418376 -126365177 + (TATATG)n Simple_repeat Simple_repeat 2 58 0 230 260 0 42 chr11 24418432 24418528 -126365025 - L1MC4 LINE L1 -1338 6704 6613 263 238 0 12 chr11 24418528 24418612 -126364941 + (TA)n Simple_repeat Simple_repeat 2 84 0 256 165 71 24 chr11 24418614 24418699 -126364854 - L1MC4 LINE L1 -1339 6703 6615 228 213 25 38 chr11 24418684 24418764 -126364789 + L1MC3 LINE L1 6569 6647 -1138 * 196 270 10 80 chr11 24419860 24419960 -126363593 + MIR SINE MIR 124 216 -46 258 265 72 0 chr11 24419970 24420053 -126363500 + MIR3 SINE MIR 119 207 -1 21 0 0 0 chr11 24420282 24420303 -126363250 + AT_rich Low_complexity Low_complexity 1 21 0 2041 138 22 40 chr11 24420553 24420924 -126362629 + THE1B LTR MaLR 1 364 0 21 0 0 0 chr11 24420931 24420952 -126362601 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr11 24421032 24421062 -126362491 + AT_rich Low_complexity Low_complexity 1 30 0 1237 191 4 8 chr11 24421985 24422221 -126361332 + MER46A DNA MER2_type 2 236 0 202 197 70 0 chr11 24422340 24422411 -126361142 + T-rich Low_complexity Low_complexity 4 79 0 3870 77 8 0 chr11 24422411 24422921 -126360632 - L1PA7 LINE L1 -11 6143 5630 231 333 27 0 chr11 24423228 24423303 -126360250 + MIR SINE MIR 80 156 -106 2181 101 10 0 chr11 24423535 24423841 -126359712 - AluY SINE Alu -2 309 1 296 307 186 26 chr11 24426221 24426602 -126356951 - L3 LINE CR1 -40 1537 1096 285 296 87 9 chr11 24426998 24427113 -126356440 + MIR SINE MIR 132 255 -7 2254 110 0 3 chr11 24427337 24427645 -126355908 - AluSc SINE Alu -2 307 1 270 0 0 0 chr11 24427648 24427678 -126355875 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 5591 123 15 2 chr11 24427678 24428815 -126354738 - L1PA14 LINE L1 -9 6152 5002 512 139 0 0 chr11 24428815 24428894 -126354659 - AluJ/FRAM SINE Alu -16 296 218 1841 173 10 0 chr11 24428934 24429235 -126354318 - AluJb SINE Alu -6 306 3 4313 179 73 3 chr11 24429235 24429837 -126353716 - L1PA14 LINE L1 -1127 5019 4334 194 0 0 37 chr11 24429837 24429864 -126353689 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 4313 179 73 3 chr11 24429864 24430149 -126353404 - L1PA14 LINE L1 -1812 4334 4070 377 345 108 48 chr11 24430417 24431011 -126352542 + L2 LINE L2 2684 3313 0 261 0 0 0 chr11 24432335 24432364 -126351189 + (CA)n Simple_repeat Simple_repeat 1 29 0 214 345 0 0 chr11 24433204 24433262 -126350291 - MIR SINE MIR -69 139 82 1283 115 0 0 chr11 24433430 24433612 -126349941 - AluSp SINE Alu -2 311 130 2700 65 3 0 chr11 24433615 24433966 -126349587 - L1PA5 LINE L1 -5 6149 5798 3990 216 12 4 chr11 24434066 24434978 -126348575 + L1PB1 LINE L1 3167 4085 -2061 5395 178 29 5 chr11 24434989 24436812 -126346741 + L1PB1 LINE L1 4295 6150 -1 244 265 98 20 chr11 24436829 24436931 -126346622 + L1MC4a LINE L1 5870 5979 -1829 220 68 23 23 chr11 24436952 24436996 -126346557 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 25 0 0 0 chr11 24437608 24437633 -126345920 + AT_rich Low_complexity Low_complexity 1 25 0 189 0 0 0 chr11 24437987 24438008 -126345545 + (TTTTTG)n Simple_repeat Simple_repeat 4 24 0 198 0 0 0 chr11 24438330 24438352 -126345201 + (TC)n Simple_repeat Simple_repeat 1 22 0 2301 108 0 0 chr11 24438448 24438754 -126344799 + AluSx SINE Alu 1 306 -6 1962 137 16 10 chr11 24538755 24539061 -126244492 + LTR9 LTR ERV1 305 612 0 3378 116 50 0 chr11 24539448 24539972 -126243581 + MER41A LTR ERV1 5 554 0 273 175 0 0 chr11 24540076 24540139 -126243414 + L1PB3 LINE L1 6092 6154 0 986 193 57 112 chr11 24540367 24540751 -126242802 - MLT1A1 LTR MaLR -2 363 1 244 151 75 0 chr11 24540826 24540879 -126242674 - MLT2B2 LTR ERVL 0 520 464 272 195 0 46 chr11 24540879 24540966 -126242587 + (TA)n Simple_repeat Simple_repeat 1 83 0 845 208 10 58 chr11 24540967 24541174 -126242379 - MLT2B2 LTR ERVL -40 475 279 335 250 21 71 chr11 24541313 24541453 -126242100 - L1MC4 LINE L1 -1274 6768 6636 1241 256 111 33 chr11 24541458 24542398 -126241155 - L1MC4a LINE L1 -1290 6518 5381 1112 141 36 32 chr11 24542642 24542862 -126240691 - HERVH LTR ERV1 -1896 5817 5597 * 4184 139 23 3 chr11 24542859 24543508 -126240045 - HERVH LTR ERV1 -2564 5149 4488 1477 87 0 5 chr11 24543510 24543717 -126239836 - HERVH LTR ERV1 -3720 3993 3788 26 30 0 0 chr11 24544742 24544775 -126238778 + AT_rich Low_complexity Low_complexity 1 33 0 1259 161 0 0 chr11 24545041 24545246 -126238307 + Tigger5 DNA MER2_type 2119 2323 0 328 312 18 0 chr11 24546391 24546500 -126237053 - L2 LINE L2 -9 3304 3194 247 169 39 91 chr11 24547177 24547254 -126236299 - MIR SINE MIR -97 165 93 648 168 127 35 chr11 24548517 24548714 -126234839 - MER114 LTR ERV -60 588 374 2836 244 84 34 chr11 24548716 24549732 -126233821 - L1MEc LINE L1 -5294 1102 36 427 282 77 57 chr11 24549892 24550101 -126233452 - MLT1C LTR MaLR -123 344 132 846 76 68 0 chr11 24550191 24550309 -126233244 - L1PA11 LINE L1 -17 6157 6032 624 242 108 25 chr11 24550369 24550649 -126232904 - L1M4 LINE L1 -2280 3866 3565 22 0 0 0 chr11 24551542 24551564 -126231989 + AT_rich Low_complexity Low_complexity 1 22 0 893 164 15 8 chr11 24551590 24551783 -126231770 - L1MD2 LINE L1 -126 6038 5841 1450 237 40 3 chr11 24551787 24552141 -126231412 + L1MD2 LINE L1 5985 6351 -8 789 212 28 15 chr11 24552383 24552574 -126230979 - MLT1C LTR MaLR 0 490 288 23 33 0 0 chr11 24553121 24553151 -126230402 + AT_rich Low_complexity Low_complexity 1 30 0 268 306 46 40 chr11 24553947 24554293 -126229260 + L1M4 LINE L1 4455 4802 -1344 221 312 91 0 chr11 24555386 24555463 -126228090 + L2 LINE L2 3227 3310 -3 914 97 30 0 chr11 24555536 24555670 -126227883 - AluSg/x SINE Alu -20 290 153 944 130 7 19 chr11 24555680 24555834 -126227719 + AluSg/x SINE Alu 144 295 -17 24 32 0 0 chr11 24556127 24556158 -126227395 + GC_rich Low_complexity Low_complexity 1 31 0 32 0 0 0 chr11 24556169 24556201 -126227352 + GC_rich Low_complexity Low_complexity 1 32 0 1582 123 18 18 chr11 24556867 24557143 -126226410 - AluY SINE Alu 0 311 36 601 158 26 2 chr11 24557973 24558099 -126225454 + THE1-int LTR MaLR 1137 1252 -328 384 0 17 35 chr11 24558325 24558383 -126225170 + (TG)n Simple_repeat Simple_repeat 2 58 0 33 66 0 0 chr11 24558658 24558719 -126224834 + AT_rich Low_complexity Low_complexity 1 61 0 202 358 123 25 chr11 24559115 24559319 -126224234 - L2 LINE L2 0 3313 3090 21 89 0 0 chr11 24559449 24559505 -126224048 + AT_rich Low_complexity Low_complexity 1 56 0 388 143 52 26 chr11 24559651 24559728 -126223825 - MSTA LTR MaLR -349 79 1 4662 181 26 25 chr11 24559736 24561024 -126222529 - L1 LINE L1 -3598 3967 2678 293 196 18 0 chr11 24561608 24561664 -126221889 + L1MD3 LINE L1 6890 6946 -1049 1535 238 52 35 chr11 24561667 24561899 -126221654 + L1MD3 LINE L1 7451 7678 -317 1881 141 3 17 chr11 24561899 24562196 -126221357 + AluSx SINE Alu 1 293 -19 1535 238 52 35 chr11 24562196 24562447 -126221106 + L1MD3 LINE L1 7678 7942 -53 389 264 61 12 chr11 24562445 24562608 -126220945 - L1M4 LINE L1 -957 5189 5019 * 1607 178 7 20 chr11 24563310 24563613 -126219940 + THE1C LTR MaLR 77 375 0 230 276 83 41 chr11 24563629 24563774 -126219779 - L1ME LINE L1 -469 5652 5502 2443 97 59 45 chr11 24563777 24564219 -126219334 + LTR7 LTR ERV1 1 448 -2 1217 170 58 0 chr11 24564292 24564515 -126219038 - AluJb SINE Alu -1 311 76 1668 192 15 0 chr11 24564700 24565033 -126218520 + L1 LINE L1 4699 5036 -1110 6960 113 1 16 chr11 24565371 24566399 -126217154 - HERV9 LTR ERV1 -7027 1372 360 1064 121 7 0 chr11 24566499 24566648 -126216905 - MER41C LTR ERV1 -404 150 1 478 170 11 11 chr11 24566648 24566741 -126216812 - MER4A LTR ERV1 -571 93 1 4794 169 11 8 chr11 24567043 24567909 -126215644 + MER4D LTR ERV1 4 872 0 347 172 35 46 chr11 24568012 24568099 -126215454 - LTR7 LTR ERV1 -2 448 363 1971 166 98 15 chr11 24568508 24568905 -126214648 + MER41C LTR ERV1 125 554 0 1849 151 21 25 chr11 24568936 24569377 -126214176 + MER4A LTR ERV1 90 664 0 216 0 0 0 chr11 24569906 24569930 -126213623 + (A)n Simple_repeat Simple_repeat 1 24 0 212 162 0 0 chr11 24569944 24569981 -126213572 + (CAAA)n Simple_repeat Simple_repeat 3 39 0 266 304 27 54 chr11 24569981 24570093 -126213460 + MIR SINE MIR 40 148 -114 777 185 5 49 chr11 24570294 24570478 -126213075 + pTR5 LTR ERV1 743 918 -1520 2016 108 42 11 chr11 24570635 24570922 -126212631 + AluSq SINE Alu 4 299 -14 244 310 112 0 chr11 24571447 24571563 -126211990 + MIR3 SINE MIR 40 168 -40 236 223 45 9 chr11 24571752 24571864 -126211689 + (TA)n Simple_repeat Simple_repeat 2 117 0 886 181 119 84 chr11 24572043 24572161 -126211392 - LTR49 LTR ERV1 -264 331 219 2215 89 0 7 chr11 24572161 24572454 -126211099 - AluY SINE Alu -20 291 1 886 181 119 84 chr11 24572454 24572655 -126210898 - LTR49 LTR ERV1 -376 219 1 215 148 37 0 chr11 24572681 24572735 -126210818 + (TCTA)n Simple_repeat Simple_repeat 2 57 0 4010 151 12 58 chr11 24572816 24573570 -126209983 - MER4D LTR ERV1 -14 889 173 2779 154 10 50 chr11 24573570 24574088 -126209465 + LOR1a LTR ERV1 1 497 0 4010 151 12 58 chr11 24574088 24574147 -126209406 - MER4D LTR ERV1 -730 173 113 1201 251 65 15 chr11 24574319 24574722 -126208831 - L1M4 LINE L1 -1110 5036 4614 519 296 47 42 chr11 24574915 24575128 -126208425 + MIR SINE MIR 37 250 -12 1683 181 80 92 chr11 24576013 24576515 -126207038 - LTR8 LTR ERV1 -195 496 1 631 135 0 29 chr11 24578278 24578382 -126205171 - L1MA9 LINE L1 -533 5779 5679 * 1775 225 56 24 chr11 24578357 24578854 -126204699 + L1MA9 LINE L1 5762 6274 -38 337 332 104 25 chr11 24578938 24579179 -126204374 - MIR SINE MIR -1 261 2 24 0 0 0 chr11 24579251 24579275 -126204278 + AT_rich Low_complexity Low_complexity 1 24 0 185 300 50 30 chr11 24579361 24579461 -126204092 - MIR SINE MIR -62 146 45 21 36 0 0 chr11 24581229 24581257 -126202296 + AT_rich Low_complexity Low_complexity 1 28 0 1083 263 86 65 chr11 24581927 24582451 -126201102 - MLT1F LTR MaLR -7 535 1 1163 213 11 4 chr11 24583297 24583574 -126199979 - L1M4 LINE L1 -1746 4400 4122 269 271 0 0 chr11 24583560 24583619 -126199934 + MLT1-int LTR MaLR 426 484 -887 * 280 286 135 19 chr11 24583634 24583893 -126199660 + L1ME2 LINE L1 4557 4845 -1301 31 113 0 0 chr11 24583973 24584123 -126199430 + AT_rich Low_complexity Low_complexity 1 150 0 1179 288 86 8 chr11 24584426 24585066 -126198487 + L1ME2 LINE L1 5153 5841 -323 14466 86 4 8 chr11 24585605 24587584 -126195969 - HERV9 LTR ERV1 -3521 4878 2908 22 35 0 0 chr11 24588400 24588429 -126195124 + AT_rich Low_complexity Low_complexity 1 29 0 28 61 0 0 chr11 24588865 24588914 -126194639 + AT_rich Low_complexity Low_complexity 1 49 0 15737 90 18 22 chr11 24589714 24592091 -126191462 + HERVH LTR ERV1 1 2367 -5346 1652 114 30 89 chr11 24592237 24592339 -126191214 - L1MA8 LINE L1 -4 6287 6180 2184 128 0 0 chr11 24592339 24592635 -126190918 + AluSq SINE Alu 1 296 -17 1652 114 30 89 chr11 24592635 24592901 -126190652 - L1MA8 LINE L1 -111 6180 5941 296 258 0 0 chr11 24592903 24592969 -126190584 - MLT1E2 LTR MaLR -435 191 126 1391 215 3 17 chr11 24593057 24593355 -126190198 - AluJb SINE Alu -18 294 1 183 80 0 0 chr11 24593370 24593395 -126190158 + (CAAAAA)n Simple_repeat Simple_repeat 2 26 0 188 370 0 33 chr11 24594096 24594188 -126189365 + MIR SINE MIR 8 96 -166 200 167 48 0 chr11 24594688 24594730 -126188823 + CT-rich Low_complexity Low_complexity 5 48 0 291 275 0 0 chr11 24595251 24595331 -126188222 - MER116 DNA Mariner 0 80 1 406 302 31 50 chr11 24595905 24596286 -126187267 + HAL1b LINE L1 194 567 -781 318 305 114 32 chr11 24596356 24596697 -126186856 + HAL1b LINE L1 429 797 -551 1084 208 53 7 chr11 24596890 24597193 -126186360 + MER33 DNA MER1_type 7 323 -1 5300 163 42 5 chr11 24597213 24598178 -126185375 - Tigger1 DNA MER2_type -7 2411 1411 5248 155 43 0 chr11 24598196 24599074 -126184479 - Tigger1 DNA MER2_type -1221 1197 282 1067 93 0 0 chr11 24599074 24599213 -126184340 - AluSp/q SINE Alu -12 301 163 227 289 24 0 chr11 24599751 24599834 -126183719 + L1ME LINE L1 2 86 -5984 21 0 0 0 chr11 24599834 24599855 -126183698 + AT_rich Low_complexity Low_complexity 1 21 0 3624 147 15 7 chr11 24600031 24600649 -126182904 + L1PA15 LINE L1 5537 6159 -6 3877 195 31 10 chr11 24600649 24601752 -126181801 - L1P4 LINE L1 -696 5470 4342 319 179 170 6 chr11 24602641 24602782 -126180771 - LTR37B LTR ERV1 0 459 312 22 0 0 0 chr11 24602782 24602804 -126180749 + AT_rich Low_complexity Low_complexity 1 22 0 1929 151 3 0 chr11 24602881 24603173 -126180380 + AluSg SINE Alu 1 293 -17 432 258 60 48 chr11 24603182 24603450 -126180103 - L1MC4a LINE L1 -591 7217 6947 660 247 105 54 chr11 24603461 24603793 -126179760 + L1MC4a LINE L1 7457 7805 -3 363 362 59 0 chr11 24604022 24604174 -126179379 + MIR SINE MIR 78 238 -24 8153 210 24 14 chr11 24604572 24604946 -126178607 - L1 LINE L1 -1916 5649 5280 1992 166 40 0 chr11 24604946 24605296 -126178257 + THE1B LTR MaLR 1 364 0 8153 210 24 14 chr11 24605296 24607305 -126176248 - L1 LINE L1 -2285 5280 3243 387 238 167 66 chr11 24607663 24607890 -126175663 - LTR16C LTR ERVL -160 331 82 290 238 71 56 chr11 24607964 24608090 -126175463 + MER103 DNA DNA 30 157 -9 235 250 0 18 chr11 24608158 24608214 -126175339 - MIR3 SINE MIR -48 160 106 53 78 0 0 chr11 24608439 24608555 -126174998 + AT_rich Low_complexity Low_complexity 1 116 0 4781 142 5 9 chr11 24609041 24609835 -126173718 + L1PA13 LINE L1 5373 6163 0 189 235 157 52 chr11 24610345 24610460 -126173093 - L2 LINE L2 -354 2960 2834 303 386 29 6 chr11 24610471 24610642 -126172911 - L2 LINE L2 -1165 2149 1975 23 54 0 0 chr11 24610782 24610819 -126172734 + AT_rich Low_complexity Low_complexity 1 37 0 262 361 37 0 chr11 24611986 24612094 -126171459 + L2 LINE L2 2866 2977 -295 375 327 83 19 chr11 24612105 24612310 -126171243 + MIR SINE MIR 1 218 -44 1534 84 4 13 chr11 24612490 24612715 -126170838 - pTR5 LTR ERV1 -2044 394 172 311 265 10 0 chr11 24612718 24612816 -126170737 - LTR30 LTR ERV1 -80 642 544 1554 104 82 145 chr11 24612816 24613182 -126170371 - pTR5 LTR ERV1 -413 2025 1683 2166 96 10 23 chr11 24613434 24613737 -126169816 + AluSp SINE Alu 1 299 -14 375 23 0 0 chr11 24613742 24613786 -126169767 + (CA)n Simple_repeat Simple_repeat 2 45 0 277 373 93 30 chr11 24614287 24614523 -126169030 - MIR SINE MIR -8 254 4 429 357 155 14 chr11 24614892 24615189 -126168364 + L3 LINE CR1 1170 1508 -69 270 332 36 79 chr11 24617209 24617462 -126166091 - L3 LINE CR1 -178 1399 1158 1341 207 57 27 chr11 24618308 24618642 -126164911 + THE1C LTR MaLR 32 375 0 4025 161 42 11 chr11 24618660 24619367 -126164186 + THE1C-int LTR MaLR 852 1580 0 1535 191 52 33 chr11 24619369 24619735 -126163818 + THE1C LTR MaLR 3 375 0 21 0 0 0 chr11 24619906 24619927 -126163626 + AT_rich Low_complexity Low_complexity 1 21 0 255 269 96 30 chr11 24620520 24620687 -126162866 - MIR SINE MIR -15 247 70 190 325 32 49 chr11 24621346 24621469 -126162084 - MIR SINE MIR -140 122 2 231 336 42 49 chr11 24623694 24623837 -126159716 - MIR SINE MIR -54 208 67 251 175 18 0 chr11 24625240 24625297 -126158256 + GA-rich Low_complexity Low_complexity 1 58 0 356 307 72 15 chr11 24625809 24626118 -126157435 - L1MEc LINE L1 -4933 1671 1162 203 265 0 0 chr11 24626318 24626367 -126157186 + CT-rich Low_complexity Low_complexity 4 52 0 947 220 164 38 chr11 24626421 24626817 -126156736 - L1MC4 LINE L1 -137 7905 7460 255 292 34 11 chr11 24626867 24626956 -126156597 - LTR16B LTR ERVL -184 280 190 710 170 71 55 chr11 24626966 24627148 -126156405 - MER20 DNA MER1_type -34 185 1 22 56 0 0 chr11 24627361 24627397 -126156156 + AT_rich Low_complexity Low_complexity 1 36 0 21 71 0 0 chr11 24627714 24627756 -126155797 + AT_rich Low_complexity Low_complexity 1 42 0 28 48 0 0 chr11 24627862 24627904 -126155649 + AT_rich Low_complexity Low_complexity 1 42 0 2197 173 34 2 chr11 24629030 24629469 -126154084 - L1MA3 LINE L1 -10 6295 5843 2884 216 27 71 chr11 24629470 24629614 -126153939 - L1M4 LINE L1 -1835 5730 5581 273 29 0 0 chr11 24629614 24629648 -126153905 + (TTCC)n Simple_repeat Simple_repeat 2 35 0 459 0 0 0 chr11 24629656 24629707 -126153846 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 2884 216 27 71 chr11 24629707 24630840 -126152713 - L1M4 LINE L1 -1991 5574 4597 1033 91 34 11 chr11 24630842 24631018 -126152535 - AluY SINE Alu -2 309 130 5306 213 33 56 chr11 24631201 24633165 -126150388 - L1M4 LINE L1 -4931 2634 16 1682 235 52 20 chr11 24633224 24633663 -126149890 + LOR1b LTR ERV1 1 453 -8 182 338 91 78 chr11 24633727 24634021 -126149532 + L2 LINE L2 2945 3245 -27 216 0 0 0 chr11 24634021 24634045 -126149508 + (CA)n Simple_repeat Simple_repeat 2 25 0 182 338 91 78 chr11 24634045 24634070 -126149483 + L2 LINE L2 3245 3268 -4 2195 194 31 0 chr11 24634365 24634778 -126148775 - MSTA LTR MaLR -2 426 1 863 251 100 33 chr11 24635310 24635406 -126148147 - Charlie4a DNA MER1_type -1472 489 401 528 154 39 58 chr11 24635406 24635510 -126148043 + U6 snRNA snRNA 2 103 -4 2346 90 0 0 chr11 24635519 24635820 -126147733 - AluY SINE Alu -10 301 1 863 251 100 33 chr11 24635820 24636171 -126147382 - Charlie4a DNA MER1_type -1567 394 1 1293 235 3 17 chr11 24637679 24637867 -126145686 - AluSx SINE Alu -12 300 116 333 0 0 0 chr11 24637867 24637904 -126145649 + (TG)n Simple_repeat Simple_repeat 2 38 0 1293 235 3 17 chr11 24637904 24638017 -126145536 - AluSx SINE Alu -196 116 3 232 258 0 15 chr11 24638386 24638452 -126145101 + T-rich Low_complexity Low_complexity 5 69 0 296 365 37 0 chr11 24638530 24638719 -126144834 - L1ME LINE L1 -390 5731 5536 21 36 0 0 chr11 24639389 24639417 -126144136 + AT_rich Low_complexity Low_complexity 1 28 0 365 229 42 17 chr11 24639576 24639694 -126143859 + L1 LINE L1 4126 4246 -1900 417 149 11 69 chr11 24639707 24639794 -126143759 - MER30 DNA MER1_type -31 199 118 4301 179 59 6 chr11 24639897 24641316 -126142237 + L1PA16 LINE L1 4609 6106 -60 23 78 0 0 chr11 24641353 24641404 -126142149 + AT_rich Low_complexity Low_complexity 1 51 0 22 0 0 0 chr11 24642041 24642063 -126141490 + AT_rich Low_complexity Low_complexity 1 22 0 201 338 29 0 chr11 24642311 24642379 -126141174 + MIR SINE MIR 47 116 -146 245 325 94 8 chr11 24643669 24643786 -126139767 + MIR SINE MIR 2 128 -134 1412 184 8 106 chr11 24643805 24644191 -126139362 - MLT1A1 LTR MaLR -17 348 1 225 269 0 0 chr11 24646564 24646616 -126136937 + T-rich Low_complexity Low_complexity 5 56 0 24 0 0 0 chr11 24647722 24647746 -126135807 + AT_rich Low_complexity Low_complexity 1 24 0 190 309 44 15 chr11 24648101 24648169 -126135384 + L2 LINE L2 2892 2961 -352 3211 180 43 47 chr11 24648297 24649020 -126134533 + LTR8A LTR ERV1 1 720 -7 229 299 47 56 chr11 24649086 24649193 -126134360 + L2 LINE L2 3204 3309 -4 1205 164 66 9 chr11 24649195 24649421 -126134132 + MER2 DNA MER2_type 106 344 -1 593 288 48 48 chr11 24650644 24650873 -126132680 - MIR SINE MIR -27 235 7 457 273 96 43 chr11 24651396 24651605 -126131948 - MIR SINE MIR 0 262 43 615 252 27 141 chr11 24651839 24651913 -126131640 + MER69 DNA AcHobo 512 593 -1933 1787 174 51 8 chr11 24651913 24652269 -126131284 + THE1C LTR MaLR 5 375 0 615 252 27 141 chr11 24652269 24652634 -126130919 + MER69 DNA AcHobo 593 901 -1625 2237 88 0 3 chr11 24652648 24652944 -126130609 + AluY SINE Alu 1 295 -16 422 33 33 0 chr11 24652966 24653026 -126130527 + L1P2 LINE L1 5456 5517 -637 594 267 6 25 chr11 24703174 24703335 -126080218 + MIR SINE MIR 105 262 0 1719 139 164 6 chr11 24703952 24704311 -126079242 + MSTA LTR MaLR 1 416 -12 24 0 0 0 chr11 24705039 24705063 -126078490 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr11 24705222 24705245 -126078308 + AT_rich Low_complexity Low_complexity 1 23 0 241 318 65 55 chr11 24705294 24705511 -126078042 - MIR SINE MIR -26 236 18 5279 152 20 13 chr11 24705712 24706609 -126076944 + Tigger2 DNA MER2_type 1813 2715 -3 624 194 7 0 chr11 24707205 24707349 -126076204 + L1MA9 LINE L1 6166 6310 -2 1752 187 13 7 chr11 24707371 24707681 -126075872 + AluJb SINE Alu 1 312 0 180 27 81 0 chr11 24709063 24709100 -126074453 + (TAGA)n Simple_repeat Simple_repeat 4 43 0 457 226 0 10 chr11 24709122 24709416 -126074137 + (TA)n Simple_repeat Simple_repeat 1 290 0 217 228 33 11 chr11 24709421 24709513 -126074040 + (TCTA)n Simple_repeat Simple_repeat 2 95 0 1572 121 0 16 chr11 24709592 24709840 -126073713 + L1PA13 LINE L1 5777 6020 -143 362 98 0 0 chr11 24709940 24709991 -126073562 + MSTA LTR MaLR 378 428 0 4829 197 41 18 chr11 24709991 24710474 -126073079 + MSTA-int LTR MaLR 1 471 -1180 2661 23 3 0 chr11 24710474 24710776 -126072777 + AluYa5 SINE Alu 1 303 -8 4829 197 41 18 chr11 24710776 24711292 -126072261 + MSTA-int LTR MaLR 471 1023 -628 232 318 12 12 chr11 24712270 24712355 -126071198 - MIR SINE MIR -110 152 68 424 225 0 0 chr11 24712550 24712621 -126070932 - FRAM SINE Alu -35 141 71 404 228 120 44 chr11 24714250 24714408 -126069145 + L1M4 LINE L1 4092 4261 -1885 2391 191 13 9 chr11 24714528 24714983 -126068570 - MER39B LTR ERV1 -194 459 3 566 270 90 5 chr11 24715463 24715663 -126067890 - L2 LINE L2 -1638 1676 1460 334 307 18 18 chr11 24716601 24716715 -126066838 + MIR3 SINE MIR 64 177 -31 647 297 57 11 chr11 24717212 24717582 -126065971 + L1MEc LINE L1 1693 2079 -4317 279 286 17 25 chr11 24717625 24717744 -126065809 + L1ME1 LINE L1 1646 1763 -4633 2369 265 39 23 chr11 24717769 24718606 -126064947 + L1ME1 LINE L1 5367 6217 -18 771 224 64 113 chr11 24718637 24718800 -126064753 + L1ME1 LINE L1 5792 5961 -205 2852 6 0 0 chr11 24718800 24719111 -126064442 + AluYa5 SINE Alu 1 311 0 771 224 64 113 chr11 24719111 24719336 -126064217 + L1ME1 LINE L1 5961 6161 -5 792 102 81 1 chr11 24719574 24719709 -126063844 + THE1C LTR MaLR 200 407 -25 22 35 0 0 chr11 24719827 24719856 -126063697 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chr11 24720389 24720424 -126063129 + AT_rich Low_complexity Low_complexity 1 35 0 2065 138 127 21 chr11 24720859 24721195 -126062358 + MSTA LTR MaLR 3 387 -41 2241 111 80 9 chr11 24721195 24721545 -126062008 + THE1C LTR MaLR 1 375 0 2065 138 127 21 chr11 24721545 24721593 -126061960 + MSTA LTR MaLR 387 428 0 567 115 0 0 chr11 24721608 24721686 -126061867 - THE1B LTR MaLR 0 364 287 3034 103 20 5 chr11 24721690 24722128 -126061425 - MLT2A2 LTR ERVL -8 445 1 1901 121 10 30 chr11 24722128 24722425 -126061128 - THE1B LTR MaLR -73 291 1 7696 175 162 7 chr11 24722425 24723791 -126059762 - THE1B-int LTR MaLR 0 1580 3 355 122 0 0 chr11 24723795 24723844 -126059709 - THE1B LTR MaLR -2 353 305 1038 228 0 0 chr11 24723844 24724033 -126059520 + L1PA12 LINE L1 1304 1492 -6089 427 167 0 13 chr11 24724036 24724114 -126059439 + MER30 DNA MER1_type 115 191 -39 553 319 0 0 chr11 24724131 24724297 -126059256 + L1PA12 LINE L1 1 166 -7415 5012 241 19 17 chr11 24724326 24725723 -126057830 + L1PA12 LINE L1 2301 3700 -3884 414 206 59 10 chr11 24726850 24726952 -126056601 + MLT1D LTR MaLR 3 109 -396 377 286 16 56 chr11 24727026 24727152 -126056401 - L2 LINE L2 0 3313 3193 233 318 73 47 chr11 24727292 24727484 -126056069 - L2 LINE L2 0 3313 3117 1156 310 74 27 chr11 24727599 24728264 -126055289 - L2 LINE L2 -299 3014 2231 555 348 61 51 chr11 24728325 24728697 -126054856 - L2 LINE L2 -276 3037 2658 280 174 0 0 chr11 24728821 24728867 -126054686 + MER52C LTR ERV1 427 472 -806 * 2469 115 211 41 chr11 24728866 24729378 -126054175 + MER52C LTR ERV1 680 1278 0 315 0 0 0 chr11 24729447 24729482 -126054071 + (TC)n Simple_repeat Simple_repeat 2 36 0 519 311 34 24 chr11 24729786 24729992 -126053561 + MLT1J2 LTR MaLR 1 208 -242 330 220 77 22 chr11 24730317 24730408 -126053145 + Zaphod DNA AcHobo 3935 4030 -1 517 297 55 31 chr11 24730899 24731447 -126052106 + L1MCc LINE L1 1354 1917 -4957 184 75 25 25 chr11 24731495 24731535 -126052018 + (TTTTTG)n Simple_repeat Simple_repeat 2 41 0 424 290 15 7 chr11 24731550 24731730 -126051823 + L1M4 LINE L1 5567 5748 -414 357 93 0 0 chr11 24731829 24731883 -126051670 + (CA)n Simple_repeat Simple_repeat 1 54 0 303 301 91 6 chr11 24731897 24732073 -126051480 + L1MCc LINE L1 2089 2279 -4662 3130 186 35 17 chr11 24732174 24732776 -126050777 + MSTB-int LTR MaLR 1039 1651 0 1846 195 74 2 chr11 24732776 24733170 -126050383 + MSTB LTR MaLR 1 422 -4 2106 147 15 27 chr11 24733173 24733581 -126049972 + L1MA6 LINE L1 5898 6300 0 3071 219 69 21 chr11 24733643 24734668 -126048885 + L1MB7 LINE L1 5108 6184 0 21 0 0 0 chr11 24735101 24735122 -126048431 + AT_rich Low_complexity Low_complexity 1 21 0 314 258 41 0 chr11 24735823 24735920 -126047633 - L1M4 LINE L1 -2241 3905 3805 1069 231 30 7 chr11 24735947 24736216 -126047337 + MLT1D LTR MaLR 227 501 -4 1519 192 21 10 chr11 24736223 24736514 -126047039 + AluJo SINE Alu 1 294 -18 204 217 0 0 chr11 24737536 24737582 -126045971 + (CA)n Simple_repeat Simple_repeat 1 46 0 22 35 0 0 chr11 24737733 24737762 -126045791 + AT_rich Low_complexity Low_complexity 1 29 0 6265 168 21 15 chr11 24739811 24741901 -126041652 - L1PA8A LINE L1 -2 6129 4122 10501 166 5 9 chr11 24741901 24742241 -126041312 + L1P LINE L1 2100 2440 -3706 2353 81 0 7 chr11 24742241 24742539 -126041014 + AluY SINE Alu 1 296 -15 10501 166 5 9 chr11 24742539 24744137 -126039416 + L1P LINE L1 2440 4029 -2117 737 78 0 142 chr11 24744237 24744378 -126039175 + L1P LINE L1 4004 4124 -2022 2712 168 31 4 chr11 24744402 24744945 -126038608 - L1MA4 LINE L1 -6 6294 5737 3099 118 28 2 chr11 24744945 24745418 -126038135 + LTR15 LTR ERV1 3 487 -6 715 185 0 8 chr11 24745424 24745554 -126037999 - L1MA4 LINE L1 -558 5742 5614 * 1478 228 31 10 chr11 24745552 24745968 -126037585 + L1 LINE L1 4920 5344 -802 1694 162 33 12 chr11 24745969 24746303 -126037250 + L1M1 LINE L1 5282 5622 -678 23 78 0 0 chr11 24746529 24746580 -126036973 + AT_rich Low_complexity Low_complexity 1 51 0 1267 189 158 25 chr11 24746960 24747282 -126036271 - MLT1A1 LTR MaLR 0 365 1 2152 120 0 16 chr11 24747852 24748160 -126035393 + AluSq SINE Alu 1 303 -10 181 265 41 0 chr11 24749386 24749435 -126034118 - L2 LINE L2 -337 2976 2926 7569 172 11 30 chr11 24749584 24751605 -126031948 - L1PA8A LINE L1 -178 5953 3982 3486 181 15 1 chr11 24751603 24752277 -126031276 - L1PA8A LINE L1 -2924 3222 2540 * 618 282 110 22 chr11 24752439 24752712 -126030841 - LTR16C LTR ERVL -8 483 187 2568 137 5 27 chr11 24752988 24753426 -126030127 + MSTA LTR MaLR 1 428 0 27 87 0 0 chr11 24753606 24753675 -126029878 + AT_rich Low_complexity Low_complexity 1 69 0 895 236 144 31 chr11 24753820 24754147 -126029406 - MLT1E1 LTR MaLR -290 364 1 226 300 22 22 chr11 24754358 24754448 -126029105 - L2 LINE L2 0 3313 3224 312 219 0 0 chr11 24754969 24755042 -126028511 - MER4C LTR ERV1 -116 349 277 2330 91 49 104 chr11 24755058 24755508 -126028045 - MER4A LTR ERV1 -239 425 1 23 54 0 0 chr11 24755658 24755695 -126027858 + AT_rich Low_complexity Low_complexity 1 37 0 221 372 23 0 chr11 24756240 24756326 -126027227 + L2 LINE L2 3224 3311 -2 240 314 137 8 chr11 24756959 24757083 -126026470 - MIR3 SINE MIR -10 198 59 1734 46 5 0 chr11 24757818 24758037 -126025516 + L1PA4 LINE L1 5933 6152 -3 207 349 101 7 chr11 24758635 24758784 -126024769 + MIR SINE MIR 22 184 -78 1722 188 7 3 chr11 24759502 24759795 -126023758 - AluJb SINE Alu -18 294 1 1721 288 58 32 chr11 24759838 24760201 -126023352 - L1M4 LINE L1 -1677 4469 4117 2049 102 7 4 chr11 24760201 24760476 -126023077 + AluSq SINE Alu 31 306 -7 1721 288 58 32 chr11 24760476 24761084 -126022469 - L1M4 LINE L1 -2029 4117 3473 825 235 50 16 chr11 24761160 24761459 -126022094 + MLT2B1 LTR ERVL 1 351 -46 180 77 0 0 chr11 24761459 24761485 -126022068 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 825 235 50 16 chr11 24761485 24761517 -126022036 + MLT2B1 LTR ERVL 351 380 -17 4480 145 50 3 chr11 24763204 24763976 -126019577 + L1PB4 LINE L1 5336 6144 -12 940 257 127 51 chr11 24764580 24765069 -126018484 + MLT1E3 LTR MaLR 52 596 -28 21 36 0 0 chr11 24765724 24765752 -126017801 + AT_rich Low_complexity Low_complexity 1 28 0 5810 117 22 7 chr11 24765752 24767048 -126016505 - L1PA14 LINE L1 -2 6159 4850 533 262 82 19 chr11 24767572 24767778 -126015775 + L1ME2 LINE L1 5924 6142 -22 243 0 0 0 chr11 24767996 24768023 -126015530 + (TA)n Simple_repeat Simple_repeat 1 27 0 1362 203 0 19 chr11 24768082 24768343 -126015210 + AluJo SINE Alu 1 256 -56 479 291 37 53 chr11 24768639 24768828 -126014725 - MIR SINE MIR -34 228 43 544 287 116 36 chr11 24770382 24770633 -126012920 - L2 LINE L2 -18 3295 3025 248 353 173 0 chr11 24771438 24771571 -126011982 + L2 LINE L2 3112 3267 -5 11505 279 42 29 chr11 24772133 24775470 -126008083 + L1PA12 LINE L1 1536 4828 -2756 1731 131 16 72 chr11 24775470 24775790 -126007763 + AluSx SINE Alu 1 302 -10 11505 279 42 29 chr11 24775790 24776743 -126006810 + L1PA12 LINE L1 4828 5767 -1817 2253 152 6 3 chr11 24776743 24777104 -126006449 - THE1B LTR MaLR 0 364 3 9676 118 35 32 chr11 24777106 24778682 -126004871 - THE1B-int LTR MaLR 0 1580 1 2347 141 6 0 chr11 24778682 24779044 -126004509 - THE1B LTR MaLR 0 364 1 11505 279 42 29 chr11 24779044 24779985 -126003568 + L1PA12 LINE L1 5766 6785 -799 998 283 55 19 chr11 24780038 24780451 -126003102 + L1M4 LINE L1 4545 4978 -1168 2122 131 57 20 chr11 24780451 24780802 -126002751 + THE1B LTR MaLR 1 364 0 998 283 55 19 chr11 24780802 24780858 -126002695 + L1M4 LINE L1 4978 5031 -1115 3447 175 11 21 chr11 24780948 24781662 -126001891 + L1MB3 LINE L1 5476 6182 -1 482 287 57 14 chr11 24781674 24781953 -126001600 + L1M4 LINE L1 5016 5306 -840 1282 278 65 15 chr11 24782004 24782407 -126001146 + MLT2F LTR ERVL 178 600 -63 285 323 32 0 chr11 24783328 24783421 -126000132 + MIR SINE MIR 45 140 -68 2124 112 3 0 chr11 24784540 24784835 -125998718 + AluSg SINE Alu 1 296 -14 482 160 0 0 chr11 24784917 24784992 -125998561 + AluJ/FLAM SINE Alu 1 75 -237 305 317 0 30 chr11 24785284 24785385 -125998168 + MLT1F LTR MaLR 86 183 -407 513 228 88 18 chr11 24785510 24785681 -125997872 + MLT1F LTR MaLR 354 536 -6 231 383 13 13 chr11 24785688 24785837 -125997716 + MLT1F-int LTR MaLR 2 150 -1221 375 335 34 38 chr11 24785838 24786101 -125997452 + MLT1F-int LTR MaLR 299 560 -811 2133 81 57 7 chr11 24786221 24786517 -125997036 + AluY SINE Alu 1 311 0 634 162 43 0 chr11 24787156 24787273 -125996280 - L1 LINE L1 -1335 4811 4690 610 114 0 0 chr11 24787342 24787430 -125996123 + L1M2 LINE L1 5641 5728 -572 2062 128 3 0 chr11 24787673 24787963 -125995590 - AluSx SINE Alu -1 311 21 21 89 0 0 chr11 24788664 24788720 -125994833 + AT_rich Low_complexity Low_complexity 1 56 0 25 31 0 0 chr11 24790470 24790502 -125993051 + AT_rich Low_complexity Low_complexity 1 32 0 9955 181 52 23 chr11 24790536 24792644 -125990909 + L1M4c LINE L1 15 2184 -4200 797 198 19 53 chr11 24792646 24792853 -125990700 + MLT1A1 LTR MaLR 1 200 -165 189 74 0 0 chr11 24793015 24793042 -125990511 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1944 170 123 8 chr11 24793149 24793532 -125990021 - MSTA LTR MaLR 0 428 2 312 324 73 22 chr11 24793807 24793943 -125989610 + MIR SINE MIR 34 176 -86 540 206 42 32 chr11 24794582 24794771 -125988782 + HsTC2 DNA Tc2 1598 1788 -110 21 0 0 0 chr11 24796075 24796096 -125987457 + AT_rich Low_complexity Low_complexity 1 21 0 1639 157 27 7 chr11 24796676 24796975 -125986578 + L1PA16 LINE L1 5861 6165 -1 208 258 140 43 chr11 24797308 24797401 -125986152 - L3 LINE CR1 -116 1461 1360 1449 215 37 17 chr11 24797655 24798009 -125985544 + MLT1A1 LTR MaLR 1 365 0 305 287 44 59 chr11 24798776 24799036 -125984517 + MIR SINE MIR 26 237 -25 189 74 0 0 chr11 24799227 24799254 -125984299 + (CA)n Simple_repeat Simple_repeat 2 28 0 1228 206 60 122 chr11 24799489 24800023 -125983530 - MER67D LTR ERV1 -8 506 6 231 295 95 21 chr11 24800086 24800181 -125983372 + MIR SINE MIR 88 189 -73 24 0 0 0 chr11 24800572 24800596 -125982957 + AT_rich Low_complexity Low_complexity 1 24 0 899 251 172 39 chr11 24801470 24801912 -125981641 + MLT1D LTR MaLR 5 505 0 1413 121 24 0 chr11 24802631 24802837 -125980716 - AluSx SINE Alu -101 211 1 22 0 7 0 chr11 24802846 24802901 -125980652 + AT_rich Low_complexity Low_complexity 1 22 0 323 300 65 33 chr11 24803726 24804156 -125979397 + L1MEc LINE L1 1041 1484 -4912 309 118 0 0 chr11 24804205 24804256 -125979297 + Alu SINE Alu 251 301 0 324 229 14 0 chr11 24805010 24805080 -125978473 - MIR SINE MIR -110 152 82 1798 144 25 0 chr11 24805084 24805419 -125978134 + AluSx SINE Alu 1 342 0 196 235 78 0 chr11 24805466 24805517 -125978036 - MIR SINE MIR -21 241 187 1783 236 51 73 chr11 24806300 24806969 -125976584 + MLT1E1 LTR MaLR 1 654 0 2240 103 17 0 chr11 24807114 24807415 -125976138 - AluSq SINE Alu -7 306 1 204 40 0 0 chr11 24807560 24807585 -125975968 + (TG)n Simple_repeat Simple_repeat 1 25 0 414 304 83 35 chr11 24807634 24808046 -125975507 - L1M4 LINE L1 -2202 3944 3486 1783 117 4 8 chr11 24808046 24808311 -125975242 + AluSx SINE Alu 36 299 -13 414 304 83 35 chr11 24808311 24808363 -125975190 - L1M4 LINE L1 -2660 3486 3438 1487 271 110 34 chr11 24808646 24809012 -125974541 + L1ME3A LINE L1 5255 5592 -578 387 0 0 0 chr11 24809012 24809055 -125974498 + (CA)n Simple_repeat Simple_repeat 1 43 0 1487 271 110 34 chr11 24809055 24809258 -125974295 + L1ME3A LINE L1 5592 5778 -392 2234 139 104 28 chr11 24809258 24809690 -125973863 - MER4C LTR ERV1 0 465 1 1487 271 110 34 chr11 24809690 24809945 -125973608 + L1ME3A LINE L1 5778 6143 -27 423 237 82 55 chr11 24809971 24810190 -125973363 + L1M4 LINE L1 2964 3188 -2958 1602 147 8 4 chr11 24813095 24813353 -125970200 + AluSx SINE Alu 42 300 -12 21 0 0 0 chr11 24813749 24813770 -125969783 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr11 24813853 24813888 -125969665 + AT_rich Low_complexity Low_complexity 1 35 0 1685 238 143 5 chr11 24813892 24814312 -125969241 - MER66A LTR ERV1 0 478 1 213 380 0 28 chr11 24814932 24815040 -125968513 - L2 LINE L2 -17 3255 3151 322 280 233 27 chr11 24815323 24815473 -125968080 - MER5A DNA MER1_type 0 189 9 208 318 0 0 chr11 24815550 24815594 -125967959 + L2 LINE L2 3221 3264 -8 2203 89 0 26 chr11 24816474 24816802 -125966751 - AluY SINE Alu 0 311 1 2731 67 13 0 chr11 24817751 24818142 -125965411 - L1PA5 LINE L1 -2717 3429 3034 15360 43 14 2 chr11 24818142 24820831 -125962722 + L1PA5 LINE L1 3432 6140 -14 3617 59 8 4 chr11 24820931 24821407 -125962146 + L1PA5 LINE L1 5671 6148 -6 423 0 0 0 chr11 24821519 24821566 -125961987 + (CA)n Simple_repeat Simple_repeat 2 48 0 557 168 0 0 chr11 24821638 24821739 -125961814 + L1MA9 LINE L1 6176 6276 -36 25 31 0 0 chr11 24822050 24822082 -125961471 + AT_rich Low_complexity Low_complexity 1 32 0 225 278 0 0 chr11 24822102 24822156 -125961397 + MLT1J2 LTR MaLR 394 447 -3 223 263 12 62 chr11 24823042 24823122 -125960431 + L3b LINE CR1 1504 1579 -4 2362 117 5 48 chr11 24823320 24823714 -125959839 - MER51B LTR ERV1 0 377 1 1363 104 9 28 chr11 24824410 24824622 -125958931 - AluSg/x SINE Alu -10 302 95 1813 181 95 53 chr11 24826684 24826750 -125956803 + LTR38 LTR ERV1 107 169 -387 2205 109 6 10 chr11 24826750 24827062 -125956491 + AluSx SINE Alu 1 311 -1 1813 181 95 53 chr11 24827062 24827427 -125956126 + LTR38 LTR ERV1 169 556 0 293 303 43 32 chr11 24829593 24829781 -125953772 - HAL1 LINE L1 -1160 1347 1158 281 250 75 17 chr11 24829760 24829880 -125953673 - HAL1 LINE L1 -2324 183 57 * 262 333 30 71 chr11 24830174 24830342 -125953211 - L3 LINE CR1 -297 1280 1120 181 176 0 0 chr11 24830594 24830628 -125952925 - L3 LINE CR1 -876 701 668 666 271 114 50 chr11 24832285 24832866 -125950687 + L1ME LINE L1 5052 5671 -499 881 353 61 31 chr11 24832942 24833866 -125949687 + ERVL LTR ERVL 4140 5112 -652 624 308 31 81 chr11 24834328 24834747 -125948806 + LTR16A1 LTR ERVL 60 457 0 405 257 18 9 chr11 24834749 24834858 -125948695 + L1ME3A LINE L1 5616 5725 -445 1400 298 41 34 chr11 24834872 24835463 -125948090 + MLT1G1 LTR MaLR 1 595 0 485 255 150 24 chr11 24835506 24835753 -125947800 + L1ME3A LINE L1 5845 6122 -48 25 31 0 0 chr11 24835976 24836008 -125947545 + AT_rich Low_complexity Low_complexity 1 32 0 1020 230 34 4 chr11 24836788 24837150 -125946403 - MER67C LTR ERV1 -62 648 220 296 406 22 0 chr11 24837782 24837920 -125945633 + MIR SINE MIR 1 141 -121 197 250 75 25 chr11 24838311 24838391 -125945162 - MIR3 SINE MIR -1 207 124 381 273 36 29 chr11 24839500 24839639 -125943914 + LTR41 LTR ERVL 1 140 -633 530 169 49 49 chr11 24839981 24840123 -125943430 + LTR41 LTR ERVL 625 766 -7 819 284 34 29 chr11 24840199 24840438 -125943115 + MIR SINE MIR 18 257 -5 192 200 0 25 chr11 24840554 24840594 -125942959 + L2 LINE L2 3017 3055 -217 247 380 20 27 chr11 24842981 24843131 -125940422 - L2 LINE L2 -220 3052 2904 3446 170 36 68 chr11 24843351 24844185 -125939368 - L1MB1 LINE L1 -5 6163 5357 990 217 21 0 chr11 24844186 24844421 -125939132 + L1MB1 LINE L1 5112 5351 -795 23 0 0 0 chr11 24844430 24844453 -125939100 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr11 24844706 24844735 -125938818 + AT_rich Low_complexity Low_complexity 1 29 0 265 276 0 0 chr11 24845557 24845615 -125937938 + CT-rich Low_complexity Low_complexity 3 60 0 303 175 0 0 chr11 24845744 24845801 -125937752 + (TA)n Simple_repeat Simple_repeat 1 57 0 669 279 100 24 chr11 24846855 24847337 -125936216 - MLT1G1 LTR MaLR -2 593 3 234 314 41 8 chr11 24848213 24848334 -125935219 + MER94 DNA DNA 1 125 -9 12261 225 56 14 chr11 24848334 24853565 -125929988 + L1PA16 LINE L1 6 5423 -1426 1569 143 55 78 chr11 24853565 24853949 -125929604 + THE1C LTR MaLR 1 375 0 8537 148 82 8 chr11 24853949 24855420 -125928133 + THE1C-int LTR MaLR 1 1580 0 1609 133 52 75 chr11 24855420 24855804 -125927749 + THE1C LTR MaLR 1 375 0 2601 199 48 20 chr11 24855815 24856841 -125926712 + L1PA16 LINE L1 5431 6477 -392 1672 159 0 16 chr11 24856842 24857156 -125926397 + L1PA16 LINE L1 6561 6869 0 218 363 12 0 chr11 24857394 24857474 -125926079 + L2 LINE L2 3228 3308 -5 25 0 0 0 chr11 24857772 24857797 -125925756 + AT_rich Low_complexity Low_complexity 1 25 0 227 139 0 0 chr11 24857816 24857852 -125925701 - MLT1I LTR MaLR 0 409 374 1038 257 62 35 chr11 24858048 24858449 -125925104 - MLT1C LTR MaLR -3 464 53 189 0 0 0 chr11 24859033 24859054 -125924499 + (T)n Simple_repeat Simple_repeat 1 21 0 471 313 33 11 chr11 24859064 24859246 -125924307 - LTR16A1 LTR ERVL -5 452 267 260 286 0 0 chr11 24859768 24859845 -125923708 + A-rich Low_complexity Low_complexity 1 77 0 21 57 0 0 chr11 24860291 24860326 -125923227 + AT_rich Low_complexity Low_complexity 1 35 0 365 277 47 34 chr11 24861882 24862030 -125921523 - L1MC4 LINE L1 -1197 6845 6696 2602 230 38 35 chr11 24864259 24865023 -125918530 + L1MA9 LINE L1 5438 6203 -109 832 190 56 11 chr11 24865030 24865209 -125918344 - MER46A DNA MER2_type 0 236 50 793 254 6 0 chr11 24865213 24865386 -125918167 + FAM SINE Alu 2 175 0 603 222 0 22 chr11 24865386 24865521 -125918032 + FLAM_C SINE Alu 2 133 0 422 143 0 0 chr11 24865555 24865618 -125917935 - MER46A DNA MER2_type -173 63 1 276 227 0 0 chr11 24865618 24865684 -125917869 + L1MA9 LINE L1 6209 6274 -38 269 230 70 10 chr11 24865703 24865803 -125917750 + L1M4 LINE L1 4633 4738 -1408 779 148 5 56 chr11 24865850 24866046 -125917507 + L1MA4 LINE L1 6096 6281 -19 25 31 0 0 chr11 24866052 24866084 -125917469 + AT_rich Low_complexity Low_complexity 1 32 0 433 143 0 44 chr11 24866098 24866189 -125917364 + L1MA2 LINE L1 6218 6304 0 977 265 67 17 chr11 24866215 24866676 -125916877 + L1M4 LINE L1 4783 5266 -880 321 294 142 50 chr11 24867393 24867611 -125915942 - MIR SINE MIR -10 252 15 26 30 0 0 chr11 24867803 24867836 -125915717 + AT_rich Low_complexity Low_complexity 1 33 0 1859 144 13 7 chr11 24868988 24869287 -125914266 - AluSx SINE Alu -11 301 1 22 0 0 0 chr11 24870058 24870080 -125913473 + AT_rich Low_complexity Low_complexity 1 22 0 297 356 34 34 chr11 24870158 24870307 -125913246 + MIR3 SINE MIR 33 181 -27 203 231 44 33 chr11 24870339 24870430 -125913123 + CT-rich Low_complexity Low_complexity 3 94 0 227 196 65 0 chr11 24871465 24871511 -125912042 + L2 LINE L2 3263 3311 -2 1840 147 32 0 chr11 24871884 24872169 -125911384 - AluSx SINE Alu -18 294 1 22 0 0 0 chr11 24872255 24872277 -125911276 + AT_rich Low_complexity Low_complexity 1 22 0 6699 36 1 0 chr11 24873780 24874584 -125908969 - L1PA3 LINE L1 -1432 4714 3910 7261 36 10 0 chr11 24874585 24876015 -125907538 + L1PA3 LINE L1 4714 6152 -3 645 227 0 23 chr11 24876081 24876213 -125907340 + FLAM_C SINE Alu 1 129 -4 273 204 20 20 chr11 24876218 24876316 -125907237 + A-rich Low_complexity Low_complexity 3 100 0 249 171 0 0 chr11 24876316 24876357 -125907196 + GA-rich Low_complexity Low_complexity 4 44 0 851 76 0 78 chr11 24876358 24876751 -125906802 + (GGAA)n Simple_repeat Simple_repeat 1 362 0 572 173 218 8 chr11 24876772 24876905 -125906648 + FAM SINE Alu 6 166 -19 23 54 0 0 chr11 24877025 24877062 -125906491 + AT_rich Low_complexity Low_complexity 1 37 0 531 296 16 21 chr11 24877276 24877465 -125906088 - MIR SINE MIR -11 251 64 733 344 121 24 chr11 24877739 24878630 -125904923 - L2 LINE L2 -33 3280 2329 752 217 56 17 chr11 24879158 24879338 -125904215 - MLT1B LTR MaLR -3 387 201 700 341 79 36 chr11 24879732 24880148 -125903405 + L3 LINE CR1 1130 1563 -14 2242 127 16 50 chr11 24881006 24881383 -125902170 - THE1B LTR MaLR 0 364 1 9283 139 11 61 chr11 24881383 24883046 -125900507 - THE1B-int LTR MaLR 0 1580 1 2202 148 22 6 chr11 24883046 24883404 -125900149 - THE1B LTR MaLR 0 364 1 272 337 56 32 chr11 24883832 24884401 -125899152 - L1M4 LINE L1 -1821 4325 3743 384 288 82 17 chr11 24884416 24884649 -125898904 - L1M4 LINE L1 -2984 3162 2915 338 349 136 44 chr11 24885232 24885665 -125897888 + L2 LINE L2 2836 3308 -5 625 290 6 0 chr11 24886358 24886534 -125897019 + MSTD LTR MaLR 1 177 -219 8524 207 27 38 chr11 24886542 24887398 -125896155 - L1PB4 LINE L1 -5 6151 5287 863 90 0 15 chr11 24887398 24887531 -125896022 - L1PA13 LINE L1 -1 6162 6032 8524 207 27 38 chr11 24887531 24888866 -125894687 - L1PB4 LINE L1 -869 5287 3939 4906 96 133 0 chr11 24888866 24889595 -125893958 + LTR12 LTR ERV1 1 826 0 8524 207 27 38 chr11 24889595 24889963 -125893590 - L1PB4 LINE L1 -2217 3939 3568 383 62 31 0 chr11 24889963 24890027 -125893526 + L1PB2 LINE L1 6086 6151 0 8524 207 27 38 chr11 24890027 24890041 -125893512 - L1PB4 LINE L1 -2588 3568 3555 767 238 6 24 chr11 24890041 24890209 -125893344 + FRAM SINE Alu 1 165 -1 8524 207 27 38 chr11 24890209 24890927 -125892626 - L1PB4 LINE L1 -2601 3555 2903 31 0 0 0 chr11 24891477 24891508 -125892045 + AT_rich Low_complexity Low_complexity 1 31 0 236 330 55 0 chr11 24891558 24891674 -125891879 + MIR SINE MIR 36 157 -51 22 35 0 0 chr11 24893050 24893079 -125890474 + AT_rich Low_complexity Low_complexity 1 29 0 22 56 0 0 chr11 24893205 24893241 -125890312 + AT_rich Low_complexity Low_complexity 1 36 0 1588 205 27 67 chr11 24893426 24893831 -125889722 - MLT1B LTR MaLR 0 390 2 1142 150 0 0 chr11 24894322 24894495 -125889058 - AluSg/x SINE Alu -2 310 138 303 93 0 0 chr11 24894639 24894682 -125888871 + (T)n Simple_repeat Simple_repeat 1 43 0 200 233 17 0 chr11 24895249 24895309 -125888244 + (TA)n Simple_repeat Simple_repeat 1 61 0 2146 123 0 0 chr11 24896684 24896977 -125886576 + AluSc SINE Alu 3 295 -14 22 35 0 0 chr11 24897383 24897412 -125886141 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr11 24898667 24898696 -125884857 + AT_rich Low_complexity Low_complexity 1 29 0 504 294 46 42 chr11 24898698 24899290 -125884263 - L1ME3A LINE L1 -135 6035 5294 22 0 0 0 chr11 24899912 24899934 -125883619 + AT_rich Low_complexity Low_complexity 1 22 0 326 285 65 8 chr11 24900017 24900140 -125883413 + MIR SINE MIR 71 200 -62 607 311 63 8 chr11 24902135 24902373 -125881180 + MIR SINE MIR 12 262 0 4212 212 28 27 chr11 24902844 24904301 -125879252 - L1P4 LINE L1 -489 6327 4879 * 4265 281 33 39 chr11 24904285 24905024 -125878529 - L1P4 LINE L1 -2782 4015 3273 2186 145 71 22 chr11 24905024 24905229 -125878324 + MSTA LTR MaLR 1 195 -233 243 0 0 0 chr11 24905229 24905256 -125878297 + (TC)n Simple_repeat Simple_repeat 1 27 0 2186 145 71 22 chr11 24905256 24905458 -125878095 + MSTA LTR MaLR 195 428 0 4265 281 33 39 chr11 24905458 24906239 -125877314 - L1P4 LINE L1 -3524 3273 2489 1923 81 97 4 chr11 24906239 24906537 -125877016 - AluY SINE Alu 0 322 1 4265 281 33 39 chr11 24906537 24908363 -125875190 - L1P4 LINE L1 -4308 2489 2 348 242 172 0 chr11 24908363 24908462 -125875091 - MLT1A2 LTR MaLR -244 130 15 376 172 11 0 chr11 24908559 24908646 -125874907 - L1ME3A LINE L1 -1096 5050 4963 446 0 19 0 chr11 24909060 24909114 -125874439 + (TCTA)n Simple_repeat Simple_repeat 2 56 0 1512 28 6 0 chr11 24909395 24909574 -125873979 + AluY SINE Alu 128 307 -4 1143 253 118 45 chr11 24909587 24910054 -125873499 + MLT1D LTR MaLR 5 505 0 188 400 0 0 chr11 24910329 24910409 -125873144 - MER5B DNA MER1_type -98 80 1 1106 324 47 50 chr11 24911745 24912844 -125870709 + L1PA16 LINE L1 8 2183 -5398 12256 240 36 26 chr11 24913077 24916902 -125866651 + L1PA16 LINE L1 2182 5969 -1635 1966 205 43 80 chr11 24916902 24917477 -125866076 + MLT2B3 LTR ERVL 1 554 0 12256 240 36 26 chr11 24917477 24918432 -125865121 + L1PA16 LINE L1 5969 7035 -569 1918 104 11 3 chr11 24918432 24918719 -125864834 - AluSq SINE Alu -24 289 1 12256 240 36 26 chr11 24918719 24919285 -125864268 + L1PA16 LINE L1 7035 7594 -10 370 77 0 0 chr11 24919553 24919605 -125863948 - L1PA6 LINE L1 0 6154 6103 273 282 14 0 chr11 24919605 24919676 -125863877 + MER94 DNA DNA 7 78 -56 220 348 170 4 chr11 24919902 24920155 -125863398 + L2 LINE L2 3019 3313 0 397 192 39 15 chr11 24921358 24921488 -125862065 + CT-rich Low_complexity Low_complexity 4 136 0 22 0 0 0 chr11 24922072 24922094 -125861459 + AT_rich Low_complexity Low_complexity 1 22 0 297 324 35 21 chr11 24922375 24922517 -125861036 - MIR SINE MIR -26 236 93 1219 298 86 19 chr11 24923268 24923417 -125860136 - L1ME3A LINE L1 -9 6161 6023 2027 101 18 0 chr11 24923417 24923694 -125859859 + AluSx SINE Alu 1 320 0 237 53 26 0 chr11 24923694 24923732 -125859821 + (CAAAA)n Simple_repeat Simple_repeat 5 180 0 1219 298 86 19 chr11 24923732 24924149 -125859404 - L1ME3A LINE L1 -147 6023 5556 406 244 30 59 chr11 24924284 24924419 -125859134 - L1MDa LINE L1 -6328 212 82 21 0 0 0 chr11 24924811 24924832 -125858721 + AT_rich Low_complexity Low_complexity 1 21 0 13592 35 2 5 chr11 24925479 24927201 -125856352 - L1P LINE L1 -2440 3706 1990 1304 221 63 20 chr11 24927846 24928224 -125855329 - MLT1B LTR MaLR 0 390 4 257 340 31 10 chr11 24928262 24928359 -125855194 - L2 LINE L2 -6 3266 3168 1619 285 105 31 chr11 24929030 24930208 -125853345 - L1ME2 LINE L1 -2 6162 4845 2443 160 24 7 chr11 24930208 24930626 -125852927 - MER61B LTR ERV1 0 425 1 1619 285 105 31 chr11 24930626 24930918 -125852635 - L1ME2 LINE L1 -1319 4845 4576 621 284 132 24 chr11 24930968 24931550 -125852003 - L1ME2 LINE L1 -2129 4017 3373 21 0 0 0 chr11 24931703 24931724 -125851829 + AT_rich Low_complexity Low_complexity 1 21 0 2354 76 0 16 chr11 24932450 24932765 -125850788 - AluY SINE Alu -1 310 1 31 58 0 0 chr11 24933188 24933240 -125850313 + AT_rich Low_complexity Low_complexity 1 52 0 768 164 63 6 chr11 24933240 24933399 -125850154 - L1MA7 LINE L1 -48 6243 6076 2005 277 55 38 chr11 24934046 24935288 -125848265 - L1M1 LINE L1 -4159 3407 2264 708 313 65 52 chr11 24935714 24936174 -125847379 - L1M1 LINE L1 -5813 1683 1218 5351 173 69 20 chr11 24936207 24936703 -125846850 + Tigger3b DNA MER2_type 2 472 -2556 2367 43 23 13 chr11 24936703 24937004 -125846549 - AluY SINE Alu -7 304 1 5351 173 69 20 chr11 24937004 24937680 -125845873 + Tigger3b DNA MER2_type 472 1231 0 1801 232 54 22 chr11 24938000 24938539 -125845014 + LTR38 LTR ERV1 1 556 0 279 352 55 40 chr11 24989018 24989416 -125794137 + L2 LINE L2 2244 2647 -667 2369 93 0 3 chr11 24989633 24989946 -125793607 + AluSp SINE Alu 1 312 -1 202 287 85 53 chr11 24991040 24991134 -125792419 + MER5A DNA MER1_type 7 103 -86 228 135 0 0 chr11 24991167 24991204 -125792349 + (TG)n Simple_repeat Simple_repeat 2 38 0 281 212 0 0 chr11 24991210 24991276 -125792277 - L1MC4 LINE L1 -1337 6705 6640 689 311 203 32 chr11 24991537 24992065 -125791488 + MLT2F LTR ERVL 1 618 -45 1734 163 53 14 chr11 24992140 24992501 -125791052 - THE1C LTR MaLR 0 375 1 3513 126 34 13 chr11 24992508 24993065 -125790488 - THE1C-int LTR MaLR -7 1573 1005 808 107 57 0 chr11 24993348 24993470 -125790083 + HERVK14 LTR ERVK 4272 4400 -1545 * 3338 63 30 4 chr11 24993463 24994127 -125789426 + HERVK14 LTR ERVK 5009 5759 -186 333 206 0 18 chr11 24994127 24994202 -125789351 + MER41C LTR ERV1 1 61 -493 558 58 66 157 chr11 24994203 24994324 -125789229 + HERVK14 LTR ERVK 5836 5945 0 4294 70 39 3 chr11 24994327 24994914 -125788639 + LTR14B LTR ERVK 1 608 0 367 352 0 0 chr11 24994925 24995033 -125788520 - LTR16C LTR ERVL -316 175 68 383 342 32 21 chr11 24995101 24995288 -125788265 - MIR SINE MIR -63 199 11 268 423 0 7 chr11 24995911 24996053 -125787500 + L2 LINE L2 2831 2971 -301 708 257 75 7 chr11 24996056 24996348 -125787205 + L1ME1 LINE L1 4019 4330 -1816 6923 261 27 13 chr11 24996351 24999362 -125784191 - L1PA12 LINE L1 -2324 5260 2182 243 295 42 11 chr11 24999598 24999693 -125783860 - L1PA12 LINE L1 -5399 2182 2085 401 356 49 26 chr11 24999902 25000287 -125783266 - L1PA12 LINE L1 -6202 1372 979 1012 262 187 22 chr11 25000305 25000850 -125782703 + L1ME1 LINE L1 4635 5269 -877 277 211 0 77 chr11 25000860 25000964 -125782589 + L1MC4 LINE L1 6614 6709 -1333 1689 257 67 59 chr11 25000983 25001827 -125781726 + L1ME1 LINE L1 5281 6165 -1 1035 333 71 2 chr11 25002880 25003300 -125780253 - LTR16B LTR ERVL -11 453 5 1360 333 59 27 chr11 25003602 25004780 -125778773 - HERV16 LTR ERVL -3423 1573 355 1267 292 33 9 chr11 25005075 25005524 -125778029 - LTR16B LTR ERVL -4 460 1 184 364 15 0 chr11 25006018 25006084 -125777469 + L2 LINE L2 3247 3313 0 21 89 0 0 chr11 25006459 25006515 -125777038 + AT_rich Low_complexity Low_complexity 1 56 0 21 0 0 0 chr11 25007970 25007991 -125775562 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr11 25008079 25008100 -125775453 + AT_rich Low_complexity Low_complexity 1 21 0 2351 133 11 6 chr11 25008252 25008614 -125774939 - THE1B LTR MaLR 0 364 1 192 77 0 0 chr11 25009057 25009083 -125774470 + (TCCCC)n Simple_repeat Simple_repeat 5 30 0 647 132 40 29 chr11 25009087 25009261 -125774292 + CT-rich Low_complexity Low_complexity 3 178 0 212 129 0 0 chr11 25009265 25009296 -125774257 + (TCCC)n Simple_repeat Simple_repeat 4 34 0 412 284 86 75 chr11 25009297 25009589 -125773964 - L1MC4 LINE L1 -977 7065 6771 660 345 105 20 chr11 25009805 25010254 -125773299 - L2 LINE L2 -1 3312 2826 195 271 62 0 chr11 25011784 25011832 -125771721 - L2 LINE L2 -74 3239 3189 25 0 0 0 chr11 25013168 25013193 -125770360 + AT_rich Low_complexity Low_complexity 1 25 0 1586 221 67 81 chr11 25013403 25013924 -125769629 - MLT2B2 LTR ERVL 0 515 2 254 253 135 18 chr11 25013939 25014109 -125769444 - L1ME LINE L1 -306 5815 5626 636 253 10 35 chr11 25014716 25014914 -125768639 - MER3 DNA MER1_type -4 205 13 23 33 0 0 chr11 25016890 25016920 -125766633 + AT_rich Low_complexity Low_complexity 1 30 0 218 342 41 66 chr11 25017035 25017231 -125766322 - L2 LINE L2 -221 3051 2861 267 257 43 0 chr11 25017662 25017732 -125765821 - L2 LINE L2 -2 3270 3198 277 328 101 0 chr11 25017947 25018066 -125765487 - L2 LINE L2 -1 3312 3182 250 299 186 10 chr11 25019099 25019196 -125764357 - L2 LINE L2 0 3313 3200 22 56 0 0 chr11 25020123 25020159 -125763394 + AT_rich Low_complexity Low_complexity 1 36 0 447 125 0 0 chr11 25020171 25020235 -125763318 - AluS SINE Alu -240 70 7 489 256 0 17 chr11 25020835 25020952 -125762601 - L1M3 LINE L1 -562 5772 5658 1713 163 22 22 chr11 25020961 25021322 -125762231 + L1MA10 LINE L1 5967 6327 -7 2121 128 3 0 chr11 25021324 25021630 -125761923 + AluSx SINE Alu 1 307 -5 23 86 0 0 chr11 25021908 25021966 -125761587 + AT_rich Low_complexity Low_complexity 1 58 0 25 65 0 0 chr11 25022221 25022267 -125761286 + AT_rich Low_complexity Low_complexity 1 46 0 324 276 35 0 chr11 25022777 25022864 -125760689 + MER94 DNA DNA 43 132 -2 533 238 111 6 chr11 25023032 25023213 -125760340 - MIR SINE MIR -25 237 38 272 183 167 33 chr11 25026092 25026212 -125757341 - Charlie7 DNA MER1_type -2443 169 34 1675 199 22 14 chr11 25026848 25027210 -125756343 - MLT1A1 LTR MaLR 0 365 1 215 103 26 0 chr11 25028445 25028484 -125755069 + (TAGA)n Simple_repeat Simple_repeat 3 42 0 189 378 57 10 chr11 25029581 25029774 -125753779 + L2 LINE L2 2437 2638 -676 25 51 0 0 chr11 25030606 25030645 -125752908 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr11 25031388 25031409 -125752144 + AT_rich Low_complexity Low_complexity 1 21 0 190 0 67 0 chr11 25032258 25032288 -125751265 + (TTTTTA)n Simple_repeat Simple_repeat 1 32 0 7157 37 8 0 chr11 25032288 25033697 -125749856 - L1PA4 LINE L1 -1 6154 4730 250 231 19 0 chr11 25034083 25034135 -125749418 + MIR3 SINE MIR 130 182 -26 1272 265 39 48 chr11 25034331 25034792 -125748761 - MLT1C LTR MaLR 0 467 11 344 263 81 0 chr11 25035312 25035411 -125748142 - MIR SINE MIR -87 175 69 2498 172 13 99 chr11 25035507 25036112 -125747441 - MLT2B3 LTR ERVL 0 554 2 21 0 0 0 chr11 25036222 25036243 -125747310 + AT_rich Low_complexity Low_complexity 1 21 0 202 255 123 47 chr11 25036511 25036617 -125746936 - MIR SINE MIR -1 261 148 253 257 99 10 chr11 25036794 25036895 -125746658 - MIR SINE MIR -113 149 40 480 287 83 28 chr11 25037642 25037858 -125745695 + MIR SINE MIR 11 238 -24 423 300 46 21 chr11 25037872 25038152 -125745401 + HAL1 LINE L1 1751 2037 -470 4360 104 222 82 chr11 25038308 25039650 -125743903 - pTR5 LTR ERV1 0 2438 743 1288 275 73 14 chr11 25040286 25040722 -125742831 - MLT1C LTR MaLR 0 467 6 252 181 248 9 chr11 25040732 25040837 -125742716 - MLT1C-int LTR MaLR -5 1366 1237 874 223 23 62 chr11 25041034 25041290 -125742263 + L1ME3 LINE L1 5886 6131 -31 1294 220 9 28 chr11 25041313 25041631 -125741922 + AluJb SINE Alu 1 312 0 204 194 0 32 chr11 25041634 25041696 -125741857 + (TAAA)n Simple_repeat Simple_repeat 2 61 0 33 25 0 0 chr11 25042404 25042444 -125741109 + AT_rich Low_complexity Low_complexity 1 40 0 688 144 96 8 chr11 25042535 25042660 -125740893 + L1PA15-16 LINE L1 1 136 -6713 * 2898 138 21 38 chr11 25042654 25043211 -125740342 + L1PA15-16 LINE L1 1884 2431 -4418 17344 176 74 9 chr11 25043211 25043914 -125739639 + L1PA16 LINE L1 1026 1682 -4484 18896 50 5 2 chr11 25043914 25047124 -125736429 - L1PA5 LINE L1 0 6154 2939 17344 176 74 9 chr11 25047124 25050232 -125733321 + L1PA16 LINE L1 1682 4574 -1592 411 21 0 0 chr11 25050232 25050280 -125733273 + (CA)n Simple_repeat Simple_repeat 1 48 0 17344 176 74 9 chr11 25050280 25051864 -125731689 + L1PA16 LINE L1 4574 6053 -113 206 200 18 73 chr11 25052424 25052479 -125731074 - MER5A DNA MER1_type 0 189 138 1047 264 106 19 chr11 25052624 25052991 -125730562 - LTR16B LTR ERVL -65 399 1 554 244 76 8 chr11 25052991 25053122 -125730431 - MER5A DNA MER1_type -43 146 7 699 266 30 15 chr11 25054576 25054779 -125728774 + MLT1C LTR MaLR 262 467 0 2250 214 34 84 chr11 25054779 25055447 -125728106 + MLT1C-int LTR MaLR 1 635 -736 5577 58 0 0 chr11 25055498 25056211 -125727342 - L1P LINE L1 -1128 5018 4306 217 320 53 73 chr11 25056483 25056633 -125726920 - MIR SINE MIR -113 149 3 368 336 107 77 chr11 25057429 25058036 -125725517 + L2 LINE L2 2077 2701 -613 22 94 0 0 chr11 25058295 25058359 -125725194 + AT_rich Low_complexity Low_complexity 1 64 0 216 167 0 0 chr11 25058682 25058718 -125724835 + (CA)n Simple_repeat Simple_repeat 2 37 0 2003 130 0 0 chr11 25058952 25059323 -125724230 - AluSx SINE Alu 0 371 1 181 274 65 16 chr11 25059339 25059401 -125724152 + L2 LINE L2 3204 3268 -4 23 101 0 0 chr11 25059500 25059579 -125723974 + AT_rich Low_complexity Low_complexity 1 79 0 351 305 118 21 chr11 25059750 25059937 -125723616 - MIR SINE MIR 0 262 58 25 31 0 0 chr11 25059951 25059983 -125723570 + AT_rich Low_complexity Low_complexity 1 32 0 536 307 99 39 chr11 25060081 25060539 -125723014 - MLT1H1 LTR MaLR 0 555 32 207 69 0 0 chr11 25060895 25060924 -125722629 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 23 0 0 0 chr11 25061324 25061347 -125722206 + AT_rich Low_complexity Low_complexity 1 23 0 658 110 50 0 chr11 25061575 25061675 -125721878 - Tigger1 DNA MER2_type -1597 821 717 23 54 0 0 chr11 25061679 25061716 -125721837 + AT_rich Low_complexity Low_complexity 1 37 0 261 247 21 21 chr11 25062078 25062171 -125721382 + GA-rich Low_complexity Low_complexity 2 94 0 385 320 56 15 chr11 25063510 25063707 -125719846 + LTR68 LTR ERV1 208 412 -328 441 0 0 0 chr11 25063968 25064017 -125719536 + (TG)n Simple_repeat Simple_repeat 2 50 0 2354 86 0 10 chr11 25064105 25064409 -125719144 + AluSp SINE Alu 1 301 -12 980 255 136 3 chr11 25064776 25065086 -125718467 + MER110A LTR ERV1 1 351 -117 261 320 102 16 chr11 25065629 25065757 -125717796 + MIR SINE MIR 124 262 0 21 0 0 0 chr11 25066059 25066080 -125717473 + AT_rich Low_complexity Low_complexity 1 21 0 800 206 52 99 chr11 25066239 25066604 -125716949 + LTR37A LTR ERV1 79 426 0 2219 150 31 72 chr11 25066934 25067267 -125716286 + MSTA LTR MaLR 1 346 -82 1909 134 0 77 chr11 25067267 25067632 -125715921 + MER1B DNA MER1_type 1 337 0 2219 150 31 72 chr11 25067632 25067676 -125715877 + MSTA LTR MaLR 346 360 -68 2277 91 7 0 chr11 25067676 25067985 -125715568 + AluSp SINE Alu 1 311 -2 2219 150 31 72 chr11 25067985 25068052 -125715501 + MSTA LTR MaLR 360 428 0 21 0 0 0 chr11 25068568 25068589 -125714964 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr11 25069966 25069987 -125713566 + AT_rich Low_complexity Low_complexity 1 21 0 462 18 0 0 chr11 25070118 25070173 -125713380 + (CA)n Simple_repeat Simple_repeat 2 56 0 30 0 0 0 chr11 25070387 25070417 -125713136 + AT_rich Low_complexity Low_complexity 1 30 0 372 185 54 9 chr11 25070422 25070745 -125712808 + (TA)n Simple_repeat Simple_repeat 1 337 0 21 0 0 0 chr11 25070887 25070908 -125712645 + AT_rich Low_complexity Low_complexity 1 21 0 377 331 54 0 chr11 25072639 25072769 -125710784 + MIR SINE MIR 55 191 -71 23 68 0 0 chr11 25073116 25073160 -125710393 + AT_rich Low_complexity Low_complexity 1 44 0 23 33 0 0 chr11 25073389 25073419 -125710134 + AT_rich Low_complexity Low_complexity 1 30 0 1351 177 4 35 chr11 25073755 25074015 -125709538 + AluJo SINE Alu 2 253 -59 1419 189 48 22 chr11 25074026 25074339 -125709214 + THE1C LTR MaLR 55 375 0 8594 159 14 37 chr11 25074342 25075956 -125707597 + THE1C-int LTR MaLR 4 1580 0 1360 149 64 34 chr11 25075956 25076251 -125707302 + THE1C LTR MaLR 1 304 -71 22 0 0 0 chr11 25076476 25076498 -125707055 + AT_rich Low_complexity Low_complexity 1 22 0 219 285 118 59 chr11 25076690 25076876 -125706677 - MIR SINE MIR -13 249 53 330 212 12 24 chr11 25077590 25077675 -125705878 + LTR33A LTR ERVL 440 523 0 1372 142 3 154 chr11 25079525 25079902 -125703651 - AluSx SINE Alu 0 327 1 25 65 0 0 chr11 25080063 25080109 -125703444 + AT_rich Low_complexity Low_complexity 1 46 0 260 315 67 55 chr11 25080458 25080623 -125702930 + MER5B DNA MER1_type 4 184 -5 4552 120 14 26 chr11 25081225 25081992 -125701561 - L1MA3 LINE L1 -2 6303 5546 9649 173 35 34 chr11 25081992 25084169 -125699384 - L1M1 LINE L1 -4178 3387 88 303 49 0 0 chr11 25084169 25084210 -125699343 + (TG)n Simple_repeat Simple_repeat 1 41 0 9649 173 35 34 chr11 25084210 25084286 -125699267 - L1M1 LINE L1 -7477 88 14 1017 245 44 26 chr11 25084814 25085198 -125698355 - MER69 DNA AcHobo -42 2484 2094 2370 97 0 3 chr11 25085300 25085608 -125697945 - AluSc SINE Alu -2 307 1 817 233 44 29 chr11 25085994 25086200 -125697353 - MER58A DNA MER1_type -15 209 1 216 330 62 18 chr11 25087802 25088004 -125695549 - MIR SINE MIR 0 262 11 207 0 0 0 chr11 25088849 25088872 -125694681 + (A)n Simple_repeat Simple_repeat 1 23 0 1229 137 0 0 chr11 25088872 25089054 -125694499 + AluSc SINE Alu 119 300 -9 521 305 174 30 chr11 25090001 25090299 -125693254 + MER115 DNA AcHobo 316 656 -37 191 350 29 29 chr11 25090463 25090566 -125692987 + L2 LINE L2 2933 3035 -237 238 289 0 0 chr11 25091074 25091164 -125692389 - L1MC4 LINE L1 -1339 6703 6614 25 75 0 0 chr11 25091175 25091228 -125692325 + AT_rich Low_complexity Low_complexity 1 53 0 2639 158 55 29 chr11 25091451 25092000 -125691553 + L1MC1 LINE L1 5755 6317 -16 443 264 58 19 chr11 25092345 25092603 -125690950 + L1MDa LINE L1 2281 2548 -3992 274 164 123 0 chr11 25092628 25092701 -125690852 + L1MDa LINE L1 2531 2612 -3928 43100 29 21 1 chr11 25092703 25098722 -125684831 + L1HS LINE L1 2 6144 -11 908 251 108 8 chr11 25098886 25099284 -125684269 + L1MDa LINE L1 2761 3198 -3342 234 0 0 0 chr11 25099773 25099799 -125683754 + (TTTTA)n Simple_repeat Simple_repeat 1 26 0 1175 283 43 5 chr11 25099990 25100364 -125683189 + MER63 DNA MER1_type 674 1061 0 824 179 7 32 chr11 25100519 25100780 -125682773 + CT-rich Low_complexity Low_complexity 1 254 0 1182 147 32 5 chr11 25100781 25100971 -125682582 - AluSx SINE Alu -117 195 1 246 239 28 0 chr11 25100992 25101063 -125682490 + CT-rich Low_complexity Low_complexity 2 74 0 1284 173 20 0 chr11 25102712 25102961 -125680592 - L1MA5 LINE L1 0 6300 6047 1951 144 7 16 chr11 25102964 25103269 -125680284 - AluSx SINE Alu -7 305 4 4793 127 31 14 chr11 25103276 25104043 -125679510 + LTR17 LTR ERV1 1 780 0 2767 182 24 9 chr11 25104062 25104605 -125678948 + L1MA5 LINE L1 5478 6028 -272 684 278 35 66 chr11 25105322 25105718 -125677835 - L1ME2 LINE L1 -1 6163 5780 2149 168 36 32 chr11 25105720 25106267 -125677286 - MLT2A2 LTR ERVL -2 552 1 363 317 37 22 chr11 25106268 25106536 -125677017 - L1ME2 LINE L1 -386 5780 5509 574 231 139 54 chr11 25106539 25106809 -125676744 - L1ME2 LINE L1 -724 5438 5192 1798 83 91 26 chr11 25106809 25107132 -125676421 + AluSg SINE Alu 1 340 0 574 231 139 54 chr11 25107132 25107368 -125676185 - L1ME2 LINE L1 -970 5192 4869 1713 245 67 60 chr11 25107393 25107927 -125675626 + MER77 LTR ERV1 55 592 -13 598 267 148 3 chr11 25107958 25108303 -125675250 - L1ME2 LINE L1 -1279 4867 4473 211 298 0 0 chr11 25108551 25108608 -125674945 + GA-rich Low_complexity Low_complexity 4 60 0 243 0 0 0 chr11 25108687 25108714 -125674839 + (CA)n Simple_repeat Simple_repeat 1 27 0 28 0 0 0 chr11 25108807 25108835 -125674718 + AT_rich Low_complexity Low_complexity 1 28 0 1691 152 71 9 chr11 25108943 25109266 -125674287 - MER61A LTR ERV1 0 343 1 853 354 70 11 chr11 25110010 25110580 -125672973 + ERVL LTR ERVL 4072 4675 -1089 293 232 152 0 chr11 25110834 25110946 -125672607 - MER104 DNA Tc2 -51 129 1 282 306 62 16 chr11 25111026 25111219 -125672334 - L1ME LINE L1 -289 5881 5680 421 312 45 9 chr11 25111350 25111571 -125671982 - L1ME LINE L1 -577 5585 5357 381 43 0 0 chr11 25112191 25112238 -125671315 + (CA)n Simple_repeat Simple_repeat 2 48 0 776 166 21 0 chr11 25112242 25112387 -125671166 - L1MA7 LINE L1 -41 6250 6103 252 86 0 0 chr11 25112615 25112650 -125670903 + (TA)n Simple_repeat Simple_repeat 1 35 0 252 350 72 22 chr11 25114410 25114560 -125668993 + MIR SINE MIR 3 159 -70 303 243 189 9 chr11 25114780 25114891 -125668662 + L2 LINE L2 3183 3313 0 336 344 77 57 chr11 25116050 25116297 -125667256 - MIR SINE MIR -6 256 5 1946 160 45 1 chr11 25116511 25117156 -125666397 - L1P5 LINE L1 -584 5570 4904 5776 185 50 24 chr11 25117179 25117748 -125665805 - L1PBb LINE L1 -3264 2939 2387 2240 95 7 3 chr11 25117748 25118053 -125665500 + AluY SINE Alu 1 306 -5 5776 185 50 24 chr11 25118053 25119791 -125663762 - L1PBb LINE L1 -3816 2387 544 2214 116 0 0 chr11 25119791 25120085 -125663468 + AluSx SINE Alu 1 294 -18 5776 185 50 24 chr11 25120085 25120589 -125662964 - L1PBb LINE L1 -5659 544 55 4631 29 7 0 chr11 25120589 25121138 -125662415 + L1PA4 LINE L1 5601 6153 -2 31 0 0 0 chr11 25121143 25121174 -125662379 + AT_rich Low_complexity Low_complexity 1 31 0 3997 293 28 28 chr11 25121191 25121675 -125661878 - L1PBa LINE L1 -5224 1639 1156 2044 151 40 0 chr11 25121675 25121999 -125661554 - MER1B DNA MER1_type 0 337 1 3997 293 28 28 chr11 25121999 25123151 -125660402 - L1PBa LINE L1 -5706 1157 3 1773 151 4 0 chr11 25123598 25123857 -125659696 + AluSx SINE Alu 39 298 -14 497 290 35 0 chr11 25123917 25124062 -125659491 + MLT1J2 LTR MaLR 31 180 -270 209 214 68 17 chr11 25124445 25124562 -125658991 + (TATAA)n Simple_repeat Simple_repeat 1 123 0 23 33 0 0 chr11 25124977 25125007 -125658546 + AT_rich Low_complexity Low_complexity 1 30 0 2529 50 0 3 chr11 25125441 25125738 -125657815 - AluY SINE Alu -13 298 3 363 161 0 62 chr11 25125939 25126020 -125657533 + MADE1 DNA Mariner 1 76 -4 2225 128 8 35 chr11 25126020 25126394 -125657159 + THE1B LTR MaLR 1 364 0 21 36 0 0 chr11 25126431 25126459 -125657094 + AT_rich Low_complexity Low_complexity 1 28 0 5324 206 32 27 chr11 25126632 25127960 -125655593 + L1MA5 LINE L1 3353 4687 -1459 * 5388 152 47 6 chr11 25127954 25128989 -125654564 + L1MA5 LINE L1 5157 6254 -46 1490 218 0 11 chr11 25128992 25129276 -125654277 + AluJo SINE Alu 1 281 -31 287 148 0 0 chr11 25129320 25129374 -125654179 + L1MA5 LINE L1 6245 6298 -2 617 291 81 0 chr11 25129821 25130031 -125653522 - MIR SINE MIR -6 256 30 773 363 65 34 chr11 25130115 25130683 -125652870 + MER115 DNA AcHobo 2 587 -106 27 29 0 0 chr11 25131474 25131508 -125652045 + AT_rich Low_complexity Low_complexity 1 34 0 331 321 0 51 chr11 25133582 25133719 -125649834 - MIR SINE MIR -6 256 127 250 337 121 6 chr11 25133776 25133942 -125649611 - L2 LINE L2 -10 3303 3119 1479 224 134 33 chr11 25134018 25134442 -125649111 + MLT2B1 LTR ERVL 3 469 -51 6186 100 9 3 chr11 25134601 25136111 -125647442 - L1PA10 LINE L1 -4 6164 4636 213 39 0 0 chr11 25136111 25136137 -125647416 + (TTG)n Simple_repeat Simple_repeat 2 27 0 772 204 0 7 chr11 25136139 25136291 -125647262 - AluJb SINE Alu -25 287 137 944 307 95 46 chr11 25136902 25137308 -125646245 - MLT1E2 LTR MaLR -7 619 142 22 0 0 0 chr11 25138033 25138055 -125645498 + AT_rich Low_complexity Low_complexity 1 22 0 1291 348 40 25 chr11 25138274 25139191 -125644362 - HERVL LTR ERVL -1253 4235 3302 518 286 62 58 chr11 25140126 25140434 -125643119 - LTR16A1 LTR ERVL -118 339 31 203 147 0 0 chr11 25140472 25140506 -125643047 + (TC)n Simple_repeat Simple_repeat 2 35 0 22 0 0 0 chr11 25140594 25140616 -125642937 + AT_rich Low_complexity Low_complexity 1 22 0 378 272 58 102 chr11 25141038 25141244 -125642309 + MER58C DNA MER1_type 2 198 -17 425 366 21 16 chr11 25141515 25141701 -125641852 - MER5A DNA MER1_type 0 189 3 379 247 75 75 chr11 25141788 25141962 -125641591 - L2 LINE L2 -23 3290 3117 206 171 24 0 chr11 25142039 25142080 -125641473 - L2 LINE L2 -614 2700 2659 1771 216 58 19 chr11 25142107 25142534 -125641019 + MLT1D LTR MaLR 62 505 0 1668 319 72 25 chr11 25142534 25143326 -125640227 - L2 LINE L2 -654 2660 1832 390 321 97 20 chr11 25143316 25143512 -125640041 + MIR SINE MIR 49 259 -3 * 1613 111 36 21 chr11 25144146 25144425 -125639128 - L1MA5A LINE L1 -1 6296 6014 247 188 0 0 chr11 25144576 25144624 -125638929 - L1PA15-16 LINE L1 -3931 2918 2871 1871 151 0 3 chr11 25145449 25145771 -125637782 - AluSx SINE Alu 0 321 1 311 136 17 0 chr11 25145890 25145949 -125637604 + (CA)n Simple_repeat Simple_repeat 2 61 0 1876 147 57 35 chr11 25146110 25146477 -125637076 + THE1C LTR MaLR 1 375 0 201 139 0 0 chr11 25146525 25146568 -125636985 + (CAA)n Simple_repeat Simple_repeat 2 44 0 731 240 17 11 chr11 25146643 25146822 -125636731 + MER20 DNA MER1_type 36 215 -4 355 349 120 5 chr11 25147203 25147395 -125636158 + LTR33 LTR ERVL 2 215 -306 180 77 0 0 chr11 25147575 25147601 -125635952 + (TAAAAA)n Simple_repeat Simple_repeat 2 27 0 2048 128 0 3 chr11 25148169 25148466 -125635087 - AluSg SINE Alu -14 296 1 759 267 234 16 chr11 25148466 25148912 -125634641 - Charlie1 DNA MER1_type -918 1843 5 328 355 94 0 chr11 25149197 25149335 -125634218 + L2 LINE L2 3103 3253 -19 241 374 25 74 chr11 25149445 25149648 -125633905 - MIR SINE MIR -14 248 56 228 241 0 0 chr11 25149866 25149924 -125633629 + (TATATG)n Simple_repeat Simple_repeat 6 63 0 229 177 0 114 chr11 25150034 25150113 -125633440 + LTR66 LTR ERVL 367 436 -174 307 273 222 46 chr11 25150895 25151111 -125632442 + MER112 DNA MER1_type 4 257 -3 6551 13 0 0 chr11 25151315 25152064 -125631489 - L1PA2 LINE L1 -147 6008 5260 * 10226 24 0 0 chr11 25152059 25153266 -125630287 + L1PA2 LINE L1 4051 5257 -889 316 301 135 0 chr11 25155092 25155248 -125628305 + MIR SINE MIR 71 247 -15 2237 102 0 0 chr11 25155435 25155720 -125627833 - AluSg SINE Alu -11 299 15 224 213 16 0 chr11 25155976 25156037 -125627516 + (TA)n Simple_repeat Simple_repeat 2 63 0 300 102 0 0 chr11 25156052 25156101 -125627452 + (TG)n Simple_repeat Simple_repeat 2 50 0 1756 233 35 19 chr11 25156602 25157313 -125626240 + MER45B DNA AcHobo 37 797 -243 952 228 48 4 chr11 25157352 25157602 -125625951 + MER45B DNA AcHobo 780 1040 0 1048 315 28 59 chr11 25158426 25159001 -125624552 + LTR67 LTR ERVL 1 557 0 1256 241 82 15 chr11 25159587 25159928 -125623625 - MLT1A1 LTR MaLR -1 364 1 240 111 0 0 chr11 25161040 25161076 -125622477 + (A)n Simple_repeat Simple_repeat 1 36 0 2006 163 14 62 chr11 25162364 25162799 -125620754 - MLT2D LTR ERVL 0 414 1 244 342 86 26 chr11 25163000 25163117 -125620436 - L2 LINE L2 -5 3267 3144 277 318 138 11 chr11 25163552 25163741 -125619812 + MIR SINE MIR 13 225 -37 2148 132 0 3 chr11 25164030 25164341 -125619212 + AluSx SINE Alu 3 312 0 204 331 62 62 chr11 25164793 25164938 -125618615 - MIR3 SINE MIR -36 172 28 2596 33 3 0 chr11 25165382 25165688 -125617865 + AluY SINE Alu 1 307 -4 4045 160 10 26 chr11 25166177 25166945 -125616608 - L1PB4 LINE L1 -169 5987 5233 4852 195 27 21 chr11 25166961 25168056 -125615497 + L1MA9 LINE L1 5070 6171 -141 180 0 0 0 chr11 25168056 25168076 -125615477 + (CA)n Simple_repeat Simple_repeat 1 20 0 4852 195 27 21 chr11 25168076 25168218 -125615335 + L1MA9 LINE L1 6171 6311 -1 202 118 29 0 chr11 25168231 25168265 -125615288 + (CAA)n Simple_repeat Simple_repeat 2 36 0 207 318 12 35 chr11 25168685 25168770 -125614783 - L2 LINE L2 -24 3248 3166 2753 104 15 0 chr11 25169193 25169588 -125613965 + HSMAR1 DNA Mariner 3 403 -884 2643 201 38 61 chr11 25169590 25170432 -125613121 + LTR1 LTR ERV1 2 785 0 5531 123 21 25 chr11 25170432 25171322 -125612231 + HSMAR1 DNA Mariner 401 1287 0 247 326 47 16 chr11 25171955 25172084 -125611469 - MIR SINE MIR -7 255 123 601 291 73 8 chr11 25172208 25172455 -125611098 + L2 LINE L2 3050 3312 -1 285 360 20 0 chr11 25172930 25173030 -125610523 + L3 LINE CR1 915 1016 -561 195 195 0 0 chr11 25173092 25173133 -125610420 - L2 LINE L2 0 3313 3273 250 387 12 18 chr11 25174955 25175123 -125608430 + L2 LINE L2 2715 2881 -433 26 64 0 0 chr11 25175265 25175312 -125608241 + AT_rich Low_complexity Low_complexity 1 47 0 215 381 0 31 chr11 25175342 25175439 -125608114 - L2 LINE L2 -25 3247 3154 29 47 0 0 chr11 25177184 25177227 -125606326 + AT_rich Low_complexity Low_complexity 1 43 0 183 42 0 0 chr11 25177629 25177653 -125605900 + (A)n Simple_repeat Simple_repeat 1 24 0 716 251 45 15 chr11 25177949 25178148 -125605405 - MLT1F LTR MaLR -268 274 70 359 237 0 13 chr11 25178161 25178237 -125605316 + THE1C LTR MaLR 1 75 -353 3965 120 100 125 chr11 25178273 25179719 -125603834 - pTR5 LTR ERV1 0 2438 744 1474 118 81 37 chr11 25179719 25179990 -125603563 + THE1C LTR MaLR 93 375 0 233 200 89 0 chr11 25179990 25180032 -125603521 - MLT1F LTR MaLR -494 48 3 600 317 56 27 chr11 25181906 25182390 -125601163 - MLT1G1 LTR MaLR 0 595 1 1216 266 46 48 chr11 25182630 25183066 -125600487 - MLT1D LTR MaLR -48 457 23 22 0 0 0 chr11 25183582 25183604 -125599949 + AT_rich Low_complexity Low_complexity 1 22 0 875 117 12 177 chr11 25183763 25184012 -125599541 - Tigger7 DNA MER2_type -69 2418 2211 1386 229 8 4 chr11 25184014 25184281 -125599272 - Tigger7 DNA MER2_type -465 268 1 1357 261 52 45 chr11 25185460 25186290 -125597263 + L1ME1 LINE L1 740 1577 -4503 610 258 42 21 chr11 25186290 25186577 -125596976 - L1ME1 LINE L1 -3909 3656 3364 927 257 14 4 chr11 25186577 25186857 -125596696 + L1ME1 LINE L1 3668 3950 -3615 1744 229 93 63 chr11 25187013 25188336 -125595217 + L1ME1 LINE L1 6216 7564 -21 270 319 143 45 chr11 25189459 25189857 -125593696 - MLT1K LTR MaLR -15 573 137 25 0 0 0 chr11 25190050 25190075 -125593478 + AT_rich Low_complexity Low_complexity 1 25 0 329 248 90 23 chr11 25190087 25190220 -125593333 + MIR SINE MIR 73 214 -48 427 175 21 21 chr11 25190235 25190332 -125593221 - FLAM_A SINE Alu -1 141 45 376 254 22 28 chr11 25191027 25191208 -125592345 + (TA)n Simple_repeat Simple_repeat 1 180 0 3135 119 73 9 chr11 25191292 25191823 -125591730 + MER34B LTR ERV1 1 565 0 207 0 0 0 chr11 25192112 25192135 -125591418 + (T)n Simple_repeat Simple_repeat 1 23 0 189 0 0 0 chr11 25192349 25192370 -125591183 + (T)n Simple_repeat Simple_repeat 1 21 0 1691 124 7 29 chr11 25192448 25192723 -125590830 + AluSx SINE Alu 36 304 -8 405 322 29 34 chr11 25192901 25193109 -125590444 + MIR SINE MIR 51 257 -5 224 275 29 29 chr11 25194104 25194173 -125589380 + MIR SINE MIR 82 150 -112 507 293 97 33 chr11 25194365 25194972 -125588581 - L1M4 LINE L1 -1063 5083 4438 22 56 0 0 chr11 25195158 25195194 -125588359 + AT_rich Low_complexity Low_complexity 1 36 0 2667 211 18 9 chr11 25195260 25195811 -125587742 - MER74A LTR ERVL 0 558 3 25 75 0 0 chr11 25195849 25195902 -125587651 + AT_rich Low_complexity Low_complexity 1 53 0 478 301 69 42 chr11 25195946 25196354 -125587199 - L1MC4a LINE L1 -1916 5892 5474 348 332 74 5 chr11 25196424 25196614 -125586939 - L1MC4a LINE L1 -2399 3747 3545 1843 113 3 31 chr11 25197110 25197402 -125586151 - AluSx SINE Alu 0 312 29 301 356 0 0 chr11 25199200 25199304 -125584249 - MIR3 SINE MIR -24 184 81 274 200 0 0 chr11 25199675 25199725 -125583828 + Alu SINE Alu 245 294 -8 427 242 0 0 chr11 25199732 25199823 -125583730 - MER67D LTR ERV1 -417 97 7 2756 198 46 132 chr11 25200564 25201536 -125582017 - MER21A LTR ERV1 -7 924 36 857 178 53 0 chr11 25201565 25201734 -125581819 + HSMAR2 DNA Mariner 1 178 -1124 708 80 7 11 chr11 25201734 25201841 -125581712 - THE1B LTR MaLR 0 364 264 * 1189 166 5 5 chr11 25201838 25202043 -125581510 + HSMAR2 DNA Mariner 617 821 -481 * 1251 202 8 12 chr11 25202038 25202296 -125581257 - THE1A LTR MaLR -98 257 1 1589 161 11 4 chr11 25202312 25202586 -125580967 + HSMAR2 DNA Mariner 181 456 -846 * 3879 149 41 18 chr11 25202579 25203303 -125580250 + HSMAR2 DNA Mariner 562 1302 0 384 314 76 8 chr11 25203989 25204343 -125579210 - L1M4 LINE L1 -1715 4431 4054 428 218 10 102 chr11 25204493 25204690 -125578863 - L1ME3A LINE L1 -87 6477 6299 54 16 0 0 chr11 25204703 25204764 -125578789 + AT_rich Low_complexity Low_complexity 1 61 0 694 283 52 0 chr11 25204764 25205033 -125578520 - L1ME3A LINE L1 -243 6321 6039 957 191 0 6 chr11 25205033 25205206 -125578347 - AluJb SINE Alu -1 311 140 590 281 11 11 chr11 25205215 25205391 -125578162 - L1ME3A LINE L1 -472 6043 5856 21 57 0 0 chr11 25205621 25205656 -125577897 + AT_rich Low_complexity Low_complexity 1 35 0 2046 101 0 28 chr11 25205745 25206033 -125577520 - AluSc SINE Alu -21 288 9 744 290 87 48 chr11 25206043 25206581 -125576972 - L1ME3A LINE L1 -2991 3549 2991 1596 173 54 38 chr11 25206639 25207008 -125576545 + THE1C LTR MaLR 1 375 0 8927 151 27 32 chr11 25207012 25208592 -125574961 + MSTA-int LTR MaLR 5 1575 -5 1624 161 180 14 chr11 25208597 25208964 -125574589 + MSTA LTR MaLR 1 428 0 301 322 0 50 chr11 25208965 25209086 -125574467 - L1ME3A LINE L1 -5434 1096 982 34 24 0 0 chr11 25209177 25209218 -125574335 + AT_rich Low_complexity Low_complexity 1 41 0 1801 256 35 31 chr11 25209238 25209528 -125574025 - MLT1F1 LTR MaLR -84 483 189 7986 52 11 0 chr11 25209528 25210484 -125573069 + LTR5 LTR ERVK 1 966 -3 1801 256 35 31 chr11 25210484 25210674 -125572879 - MLT1F1 LTR MaLR -378 189 1 661 333 74 20 chr11 25210747 25211140 -125572413 - L1ME3A LINE L1 -5650 880 467 316 291 69 44 chr11 25212702 25212905 -125570648 + L2 LINE L2 3106 3313 0 193 304 36 0 chr11 25213401 25213457 -125570096 + MIR SINE MIR 204 261 -1 11266 45 2 0 chr11 25213559 25214967 -125568586 - L1PA5 LINE L1 -1745 4401 2991 7535 52 5 0 chr11 25214967 25216690 -125566863 + L1PA5 LINE L1 4425 6153 -1 248 371 11 34 chr11 25216703 25216878 -125566675 + MIR SINE MIR 86 256 -6 185 273 42 91 chr11 25216931 25217074 -125566479 + MIR SINE MIR 80 215 -47 1994 125 0 26 chr11 25217733 25218036 -125565517 - AluSx SINE Alu -17 295 1 199 300 29 14 chr11 25218341 25218411 -125565142 + L2 LINE L2 2906 2976 -337 3470 243 36 48 chr11 25218587 25219345 -125564208 - L1MD1 LINE L1 -1 6241 5475 718 82 20 0 chr11 25219345 25219443 -125564110 + HY3 scRNA scRNA 1 100 -1 3470 243 36 48 chr11 25219443 25220499 -125563054 - L1MD1 LINE L1 -767 5475 4454 1518 230 99 2 chr11 25220585 25221051 -125562502 + L1MDa LINE L1 1712 2222 -4318 1045 241 108 0 chr11 25221137 25221415 -125562138 - L1ME3A LINE L1 -6181 359 52 2425 111 75 8 chr11 25223646 25224035 -125559518 - MSTA LTR MaLR -11 417 3 1291 225 15 89 chr11 25224225 25224629 -125558924 - MLT1A2 LTR MaLR 0 374 1 1327 252 53 86 chr11 25224984 25225604 -125557949 - LTR9 LTR ERV1 -12 600 1 687 256 126 8 chr11 25225940 25226178 -125557375 - AluSg SINE Alu -44 266 1 318 254 155 14 chr11 25226771 25226857 -125556696 - MLT1J LTR MaLR -349 162 89 207 0 0 0 chr11 25226857 25226880 -125556673 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 318 254 155 14 chr11 25226880 25226935 -125556618 - MLT1J LTR MaLR -422 89 1 286 241 0 0 chr11 25228368 25228426 -125555127 - L2 LINE L2 0 3313 3256 23 0 0 0 chr11 25228604 25228627 -125554926 + AT_rich Low_complexity Low_complexity 1 23 0 198 200 0 0 chr11 25229066 25229101 -125554452 - L2 LINE L2 -556 2758 2724 1747 149 40 66 chr11 25230288 25230683 -125552870 - L1MA9 LINE L1 -12 6300 5916 1160 259 11 125 chr11 25230794 25231488 -125552065 - L1PA10 LINE L1 -255 5913 5299 9456 219 32 32 chr11 25231498 25231519 -125552034 - L1MA9 LINE L1 -961 5185 5166 219 36 0 0 chr11 25231519 25231547 -125552006 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 9456 219 32 32 chr11 25231547 25234146 -125549407 - L1MA9 LINE L1 -980 5166 2563 477 172 9 60 chr11 25234172 25234288 -125549265 - FLAM_C SINE Alu -8 135 26 372 377 15 25 chr11 25234710 25234909 -125548644 + MIR3 SINE MIR 8 204 -4 180 338 38 12 chr11 25235568 25235648 -125547905 + MIR SINE MIR 42 123 -85 28 0 0 0 chr11 25235661 25235689 -125547864 + AT_rich Low_complexity Low_complexity 1 28 0 216 414 69 13 chr11 25236695 25236927 -125546626 - L2 LINE L2 -219 3053 2809 877 278 50 90 chr11 25237187 25237440 -125546113 + LTR16A LTR ERVL 21 283 -167 2099 192 29 7 chr11 25237440 25237857 -125545696 - MSTB LTR MaLR 0 426 1 8093 193 13 26 chr11 25237866 25239535 -125544018 - MSTB-int LTR MaLR -3 1648 1 2219 135 57 50 chr11 25239535 25239786 -125543767 - MSTB LTR MaLR 0 426 169 1745 153 49 0 chr11 25239786 25240095 -125543458 + AluSx SINE Alu 1 312 0 2219 135 57 50 chr11 25240095 25240266 -125543287 - MSTB LTR MaLR -257 169 1 877 278 50 90 chr11 25240266 25240422 -125543131 + LTR16A LTR ERVL 289 424 -26 588 283 66 20 chr11 25241462 25241660 -125541893 - MIR SINE MIR -50 212 6 486 0 0 0 chr11 25242101 25242155 -125541398 + (CA)n Simple_repeat Simple_repeat 1 54 0 274 261 92 39 chr11 25242548 25242678 -125540875 - MIR SINE MIR -101 161 25 683 335 44 24 chr11 25242760 25243190 -125540363 - LTR16A LTR ERVL -9 448 2 317 366 23 0 chr11 25243197 25243328 -125540225 - MIR SINE MIR -10 252 119 329 335 47 28 chr11 25245098 25245313 -125538240 - MLT1K LTR MaLR -368 220 2 263 167 15 0 chr11 25245348 25245414 -125538139 + (TA)n Simple_repeat Simple_repeat 1 67 0 743 199 54 18 chr11 25245620 25245786 -125537767 - FAM SINE Alu 0 175 4 257 235 259 0 chr11 25246401 25246486 -125537067 - MIR SINE MIR -8 254 148 488 309 75 53 chr11 25246796 25247116 -125536437 + MER68 LTR ERV1 236 562 0 1612 275 130 30 chr11 25247541 25248462 -125535091 - L1MDa LINE L1 -2658 3724 2897 4250 91 17 9 chr11 25248462 25249103 -125534450 - L1MA1 LINE L1 0 6302 5657 1612 275 130 30 chr11 25249103 25249522 -125534031 - L1MDa LINE L1 -3485 2897 2521 180 0 0 0 chr11 25249522 25249542 -125534011 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1612 275 130 30 chr11 25249542 25250122 -125533431 - L1MDa LINE L1 -3861 2521 1496 1706 39 5 0 chr11 25250133 25250339 -125533214 - L1P2 LINE L1 -1884 4262 4056 * 9064 34 11 1 chr11 25250336 25251863 -125531690 + L1P2 LINE L1 4269 5808 -347 6852 38 36 0 chr11 25251963 25252916 -125530637 + L1PA4 LINE L1 5171 6154 -1 317 292 83 49 chr11 25252918 25253349 -125530204 - L1MDa LINE L1 -4814 1568 1123 330 324 89 33 chr11 25253354 25253567 -125529986 - L1MDa LINE L1 -5472 1091 867 359 374 46 27 chr11 25253855 25254074 -125529479 - L1MDa LINE L1 -5931 632 410 259 71 0 24 chr11 25254769 25254811 -125528742 + L1MB7 LINE L1 5919 5959 -225 1378 167 56 0 chr11 25255116 25255386 -125528167 - L1MA4 LINE L1 -340 5960 5676 1657 176 0 0 chr11 25255390 25255692 -125527861 + L1MA4 LINE L1 5999 6300 0 22 35 0 0 chr11 25256083 25256112 -125527441 + AT_rich Low_complexity Low_complexity 1 29 0 187 315 169 42 chr11 25256556 25257036 -125526517 - L2 LINE L2 -738 2576 2036 3524 233 44 19 chr11 25257037 25258318 -125525235 + L1MB7 LINE L1 4875 6183 -1 428 290 32 38 chr11 25259021 25259207 -125524346 + MIR SINE MIR 23 207 -55 246 219 133 38 chr11 25260019 25260124 -125523429 + MIR SINE MIR 120 234 -28 210 37 0 0 chr11 25260160 25260187 -125523366 + (TC)n Simple_repeat Simple_repeat 2 28 0 345 24 0 0 chr11 25260187 25260229 -125523324 + (CA)n Simple_repeat Simple_repeat 1 42 0 345 306 82 55 chr11 25266130 25266313 -125517240 + MIR SINE MIR 67 254 -8 26 0 0 0 chr11 25266331 25266357 -125517196 + AT_rich Low_complexity Low_complexity 1 26 0 1868 127 3 14 chr11 25266541 25266848 -125516705 - AluSg1 SINE Alu 0 304 1 349 219 195 16 chr11 25267802 25267925 -125515628 - MIR3 SINE MIR -49 159 15 294 319 118 7 chr11 25268607 25268751 -125514802 + MIR SINE MIR 74 233 -29 28 29 0 0 chr11 25268862 25268897 -125514656 + AT_rich Low_complexity Low_complexity 1 35 0 26 0 0 0 chr11 25268934 25268960 -125514593 + AT_rich Low_complexity Low_complexity 1 26 0 228 280 97 21 chr11 25269598 25269691 -125513862 + MIR SINE MIR 150 249 -13 21 95 0 0 chr11 25270068 25270131 -125513422 + AT_rich Low_complexity Low_complexity 1 63 0 234 323 32 11 chr11 25271278 25271371 -125512182 + MER5A DNA MER1_type 7 101 -88 40 0 0 0 chr11 25272130 25272170 -125511383 + AT_rich Low_complexity Low_complexity 1 40 0 596 309 51 6 chr11 25272208 25272386 -125511167 - MIR SINE MIR -75 187 2 27 0 0 0 chr11 25272846 25272873 -125510680 + AT_rich Low_complexity Low_complexity 1 27 0 263 371 113 10 chr11 25272873 25273067 -125510486 - MIR SINE MIR 0 262 49 242 99 50 58 chr11 25273592 25273713 -125509840 + (TA)n Simple_repeat Simple_repeat 2 121 0 22 35 0 0 chr11 25273846 25273875 -125509678 + AT_rich Low_complexity Low_complexity 1 29 0 207 232 146 12 chr11 25274158 25274240 -125509313 - MIR SINE MIR -46 216 124 657 212 116 83 chr11 25274599 25274754 -125508799 - MLT1J LTR MaLR -3 508 360 522 189 89 125 chr11 25274754 25275035 -125508518 + ORSL DNA AcHobo 5 275 0 657 212 116 83 chr11 25275035 25275181 -125508372 - MLT1J LTR MaLR -151 360 197 400 268 165 0 chr11 25275384 25275511 -125508042 + MER6B DNA MER2_type 2 149 -61 35 0 0 0 chr11 25275551 25275586 -125507967 + AT_rich Low_complexity Low_complexity 1 35 0 282 350 80 0 chr11 25276441 25276578 -125506975 - MIR3 SINE MIR -2 206 59 2230 95 0 25 chr11 25276904 25277219 -125506334 - AluSx SINE Alu -4 308 2 22 0 0 0 chr11 25277364 25277386 -125506167 + AT_rich Low_complexity Low_complexity 1 22 0 186 327 0 0 chr11 25279578 25279633 -125503920 - L2 LINE L2 -4 3268 3214 587 270 91 20 chr11 25279927 25280179 -125503374 + LTR16A1 LTR ERVL 188 457 0 346 302 47 30 chr11 25280179 25280348 -125503205 + MIR SINE MIR 36 207 -55 3391 113 69 26 chr11 25280480 25281089 -125502464 - LTR24C LTR ERV1 0 635 1 2500 58 0 3 chr11 25281366 25281675 -125501878 + AluY SINE Alu 1 308 -3 28 86 0 0 chr11 25281686 25281756 -125501797 + AT_rich Low_complexity Low_complexity 1 70 0 193 423 10 10 chr11 25282383 25282487 -125501066 - MIR SINE MIR -140 122 19 2337 158 49 7 chr11 25282873 25283321 -125500232 - MER101 LTR ERV1 0 474 8 602 126 0 0 chr11 25284949 25285036 -125498517 - MER70B LTR ERVL -2 576 490 2214 127 0 0 chr11 25285231 25285531 -125498022 + AluSx SINE Alu 1 300 -12 180 125 0 0 chr11 25286492 25286524 -125497029 + (T)n Simple_repeat Simple_repeat 1 32 0 22 70 0 0 chr11 25287443 25287486 -125496067 + AT_rich Low_complexity Low_complexity 1 43 0 25 51 0 0 chr11 25287697 25287736 -125495817 + AT_rich Low_complexity Low_complexity 1 39 0 24 0 0 0 chr11 25288358 25288382 -125495171 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr11 25291541 25291563 -125491990 + AT_rich Low_complexity Low_complexity 1 22 0 288 0 0 0 chr11 25291730 25291762 -125491791 + (CA)n Simple_repeat Simple_repeat 1 32 0 266 256 83 33 chr11 25292418 25292539 -125491014 + MER103 DNA DNA 23 149 -17 628 39 0 0 chr11 25292672 25292750 -125490803 - L1PA4 LINE L1 -3 6152 6075 309 305 47 47 chr11 25293263 25293453 -125490100 + L2 LINE L2 3124 3313 0 277 344 120 50 chr11 25293814 25294355 -125489198 + L2 LINE L2 1699 2277 -1037 234 0 0 0 chr11 25294377 25294403 -125489150 + (TTA)n Simple_repeat Simple_repeat 2 27 0 22 56 0 0 chr11 25294604 25294640 -125488913 + AT_rich Low_complexity Low_complexity 1 36 0 2048 178 31 2 chr11 25294640 25295055 -125488498 - L1MA5 LINE L1 -6 6294 5868 451 305 170 27 chr11 25295064 25295323 -125488230 + L2 LINE L2 2298 2593 -721 520 273 130 60 chr11 25295346 25295793 -125487760 - L1MC5 LINE L1 -32 7929 7452 207 218 0 0 chr11 25297582 25297637 -125485916 + (TA)n Simple_repeat Simple_repeat 2 56 0 212 266 16 38 chr11 25297693 25297877 -125485676 + (TA)n Simple_repeat Simple_repeat 1 180 0 12875 165 25 18 chr11 25298277 25300676 -125482877 - Tigger1 DNA MER2_type -1 2417 1 719 229 48 0 chr11 25301580 25301768 -125481785 + L1MC4a LINE L1 4920 5116 -1030 363 206 305 0 chr11 25301769 25301900 -125481653 + L1MB7 LINE L1 6005 6175 -9 206 268 18 0 chr11 25301952 25302008 -125481545 + (TATATG)n Simple_repeat Simple_repeat 3 59 0 303 351 109 14 chr11 25302008 25302293 -125481260 + L1MC4a LINE L1 5597 5908 -1900 22 0 0 0 chr11 25302447 25302469 -125481084 + AT_rich Low_complexity Low_complexity 1 22 0 303 326 16 0 chr11 25302630 25302759 -125480794 - MER94 DNA DNA -3 131 1 223 284 0 30 chr11 25303172 25303239 -125480314 + MIR SINE MIR 192 256 -6 1533 221 0 49 chr11 25303594 25303983 -125479570 + MLT1A2 LTR MaLR 1 370 -4 2287 111 0 0 chr11 25304309 25304616 -125478937 + AluSq SINE Alu 1 307 -6 22 0 0 0 chr11 25306550 25306572 -125476981 + AT_rich Low_complexity Low_complexity 1 22 0 2026 119 0 4 chr11 25306906 25307184 -125476369 + AluSx SINE Alu 30 306 -6 1593 200 13 13 chr11 25307296 25307611 -125475942 - LTR38 LTR ERV1 0 556 242 9386 184 27 27 chr11 25307630 25310246 -125473307 - L1PA13 LINE L1 -13 6150 3535 234 0 0 0 chr11 25310246 25310272 -125473281 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 9386 184 27 27 chr11 25310272 25310302 -125473251 - L1PA13 LINE L1 -2628 3535 3506 306 0 0 0 chr11 25310302 25310336 -125473217 + (TGG)n Simple_repeat Simple_repeat 1 34 0 9386 184 27 27 chr11 25310336 25310517 -125473036 - L1PA13 LINE L1 -2656 3507 3322 5199 172 28 10 chr11 25310517 25312059 -125471494 + L1PA15 LINE L1 4606 6161 -4 4177 183 30 8 chr11 25312273 25313106 -125470447 - Tigger3b DNA MER2_type -379 852 2 219 351 27 54 chr11 25313862 25314047 -125469506 - L3 LINE CR1 -135 1442 1263 867 185 0 25 chr11 25314132 25314294 -125469259 + FRAM SINE Alu 2 159 -17 1426 204 35 32 chr11 25314556 25314959 -125468594 + L1MB8 LINE L1 5774 6177 -1 276 255 0 11 chr11 25315618 25315712 -125467841 + L1M4 LINE L1 3909 4001 -2145 277 296 113 12 chr11 25315847 25316087 -125467466 + L1M4 LINE L1 4182 4445 -1701 38 75 0 0 chr11 25316237 25316317 -125467236 + AT_rich Low_complexity Low_complexity 1 80 0 195 167 0 0 chr11 25316469 25316511 -125467042 + (TA)n Simple_repeat Simple_repeat 1 42 0 23 33 0 0 chr11 25317117 25317147 -125466406 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr11 25318032 25318054 -125465499 + AT_rich Low_complexity Low_complexity 1 22 0 391 333 99 39 chr11 25318149 25318585 -125464968 + L3 LINE CR1 823 1284 -293 273 304 112 0 chr11 25318587 25318712 -125464841 + MIR SINE MIR 124 262 0 1803 152 7 14 chr11 25319032 25319328 -125464225 + AluJo SINE Alu 1 294 -18 23 33 0 0 chr11 25321047 25321077 -125462476 + AT_rich Low_complexity Low_complexity 1 30 0 285 261 14 0 chr11 25321120 25321189 -125462364 + MLT2B3 LTR ERVL 1 70 -484 2265 206 16 56 chr11 25321287 25321786 -125461767 + MLT2B3 LTR ERVL 76 554 0 1032 216 33 118 chr11 25321920 25322318 -125461235 + MLT1A1 LTR MaLR 1 364 -1 1202 82 0 12 chr11 25323278 25323448 -125460105 + L1PA7 LINE L1 5959 6126 -28 277 309 41 0 chr11 25323893 25323990 -125459563 - MER5B DNA MER1_type -9 169 69 195 318 157 37 chr11 25324087 25324304 -125459249 - L2 LINE L2 -683 2631 2389 346 336 47 23 chr11 25324424 25324552 -125459001 - L2 LINE L2 -8 3264 3134 34 0 0 0 chr11 25324692 25324726 -125458827 + AT_rich Low_complexity Low_complexity 1 34 0 2347 72 0 25 chr11 25324835 25325181 -125458372 + L1PA7 LINE L1 5824 6161 0 32 0 0 0 chr11 25325509 25325541 -125458012 + AT_rich Low_complexity Low_complexity 1 32 0 2304 77 0 29 chr11 25325911 25326223 -125457330 + AluY SINE Alu 1 303 -8 185 327 88 26 chr11 25326699 25326812 -125456741 - L2 LINE L2 -4 3309 3190 192 275 66 33 chr11 25327256 25327347 -125456206 - MIR3 SINE MIR -28 180 87 768 234 8 51 chr11 25329364 25329620 -125453933 + L1M4b LINE L1 1358 1602 -5257 25 0 0 0 chr11 25329627 25329652 -125453901 + AT_rich Low_complexity Low_complexity 1 25 0 1263 117 6 0 chr11 25329658 25329838 -125453715 - AluSc SINE Alu 0 309 129 198 103 0 0 chr11 25329842 25329871 -125453682 + (TG)n Simple_repeat Simple_repeat 2 30 0 261 278 0 0 chr11 25329873 25329963 -125453590 + L1MC4 LINE L1 6614 6703 -1339 207 0 0 0 chr11 25329963 25329986 -125453567 + (CA)n Simple_repeat Simple_repeat 2 24 0 353 261 11 0 chr11 25330119 25330207 -125453346 + L1MC4 LINE L1 6614 6702 -1340 934 114 0 0 chr11 25330230 25330353 -125453200 - AluSc SINE Alu -186 123 1 1737 273 46 30 chr11 25330380 25331139 -125452414 + L1M4b LINE L1 1623 2393 -4566 894 239 71 34 chr11 25331187 25331360 -125452193 + L1M4b LINE L1 2950 3115 -3842 1502 137 26 0 chr11 25331360 25331586 -125451967 + AluSg/x SINE Alu 71 302 -10 894 239 71 34 chr11 25331586 25331778 -125451775 + L1M4b LINE L1 3115 3325 -3632 24 0 0 0 chr11 25331839 25331863 -125451690 + AT_rich Low_complexity Low_complexity 1 24 0 384 255 32 0 chr11 25332635 25332729 -125450824 - MER5A DNA MER1_type -83 106 10 30 27 0 0 chr11 25333059 25333096 -125450457 + AT_rich Low_complexity Low_complexity 1 37 0 180 216 0 0 chr11 25333775 25333812 -125449741 + L3 LINE CR1 1114 1150 -427 275 303 34 3 chr11 25334033 25334128 -125449425 - MIR SINE MIR -64 144 75 * 367 382 50 28 chr11 25334123 25334482 -125449071 + L3 LINE CR1 1208 1574 -3 21 71 0 0 chr11 25335453 25335495 -125448058 + AT_rich Low_complexity Low_complexity 1 42 0 245 281 164 20 chr11 25336543 25336689 -125446864 + MIR SINE MIR 47 213 -49 23 0 0 0 chr11 25337071 25337094 -125446459 + AT_rich Low_complexity Low_complexity 1 23 0 1138 29 0 0 chr11 25337094 25337230 -125446323 - L1PA4 LINE L1 -3 6152 6017 1111 35 18 29 chr11 25337262 25337346 -125446207 + (TTTC)n Simple_repeat Simple_repeat 1 252 0 1111 35 18 29 chr11 25337346 25337517 -125446036 + (TTTC)n Simple_repeat Simple_repeat 2 170 0 200 255 0 0 chr11 25337625 25337676 -125445877 + (TG)n Simple_repeat Simple_repeat 1 51 0 1639 191 112 56 chr11 25337733 25338216 -125445337 - MER67D LTR ERV1 -4 510 1 215 154 26 0 chr11 25338399 25338438 -125445115 + GA-rich Low_complexity Low_complexity 4 43 0 255 321 128 20 chr11 25338801 25338997 -125444556 - MIR SINE MIR -37 225 9 2263 110 0 7 chr11 25339345 25339655 -125443898 + AluSg SINE Alu 3 310 0 26 50 0 0 chr11 25340112 25340152 -125443401 + AT_rich Low_complexity Low_complexity 1 40 0 22 0 0 0 chr11 25340525 25340547 -125443006 + AT_rich Low_complexity Low_complexity 1 22 0 268 292 0 95 chr11 25340878 25341015 -125442538 - MIR SINE MIR -28 234 111 363 306 35 29 chr11 25341068 25341241 -125442312 - MLT1J LTR MaLR -21 490 317 2454 137 57 26 chr11 25341686 25342146 -125441407 + L1PA16 LINE L1 5682 6155 -11 1687 175 0 0 chr11 25344601 25344928 -125438625 + AluSx SINE Alu 1 327 0 380 328 59 46 chr11 25344950 25345188 -125438365 - MIR SINE MIR -8 254 14 234 0 0 0 chr11 25345512 25345538 -125438015 + (T)n Simple_repeat Simple_repeat 1 26 0 252 0 0 0 chr11 25345953 25345981 -125437572 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 244 218 36 36 chr11 25346333 25346443 -125437110 + (CATATA)n Simple_repeat Simple_repeat 2 111 0 2224 75 0 30 chr11 25346919 25347224 -125436329 - AluY SINE Alu -15 296 1 188 252 97 68 chr11 25347266 25347369 -125436184 - L2 LINE L2 -1 3312 3207 189 280 144 16 chr11 25347559 25347684 -125435869 - L3b LINE CR1 -173 1410 1270 221 356 59 0 chr11 25348127 25348228 -125435325 - MIR SINE MIR -31 231 125 21 0 0 0 chr11 25350211 25350232 -125433321 + AT_rich Low_complexity Low_complexity 1 21 0 312 369 36 0 chr11 25350876 25350987 -125432566 - L2 LINE L2 -8 3264 3150 245 286 20 0 chr11 25351262 25351360 -125432193 + T-rich Low_complexity Low_complexity 3 102 0 22 0 0 0 chr11 25351862 25351884 -125431669 + AT_rich Low_complexity Low_complexity 1 22 0 292 279 152 19 chr11 25351898 25352056 -125431497 - MIR SINE MIR 0 262 84 183 254 16 32 chr11 25352522 25352585 -125430968 + MIR SINE MIR 155 216 -46 255 214 83 24 chr11 25352594 25352678 -125430875 + MIR3 SINE MIR 119 207 -1 801 208 0 11 chr11 25353487 25353665 -125429888 - L1MA6 LINE L1 -1 6299 6124 724 204 13 13 chr11 25354177 25354329 -125429224 + FRAM SINE Alu 1 152 -24 287 328 22 0 chr11 25354840 25354969 -125428584 + MIR SINE MIR 45 180 -28 22 56 0 0 chr11 25355033 25355069 -125428484 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr11 25356554 25356577 -125426976 + AT_rich Low_complexity Low_complexity 1 23 0 863 255 99 57 chr11 25356665 25356744 -125426809 - MLT1G1 LTR MaLR -205 390 316 353 303 9 0 chr11 25356744 25356853 -125426700 - MER81 DNA DNA -2 112 3 863 255 99 57 chr11 25356853 25357145 -125426408 - MLT1G1 LTR MaLR -279 316 3 205 330 66 11 chr11 25357159 25357250 -125426303 + L2 LINE L2 3199 3294 -19 202 364 30 10 chr11 25358059 25358158 -125425395 + L2 LINE L2 1459 1559 -1755 1851 307 50 38 chr11 25358282 25359230 -125424323 + L2 LINE L2 1807 2832 -482 384 253 20 0 chr11 25360123 25360273 -125423280 + (CA)n Simple_repeat Simple_repeat 2 154 0 1754 183 54 6 chr11 25360290 25360639 -125422914 - MLT2D LTR ERVL -48 366 1 212 288 0 61 chr11 25361341 25361407 -125422146 - MIR SINE MIR -113 149 88 450 75 0 0 chr11 25362275 25362342 -125421211 + (TG)n Simple_repeat Simple_repeat 2 68 0 564 100 0 0 chr11 25363384 25363464 -125420089 + MADE1 DNA Mariner 1 80 0 217 317 49 41 chr11 25364989 25365112 -125418441 - L2 LINE L2 -290 2982 2859 23 33 0 0 chr11 25365263 25365293 -125418260 + AT_rich Low_complexity Low_complexity 1 30 0 327 338 60 48 chr11 25365481 25365795 -125417758 + MLT1L LTR MaLR 210 527 -88 341 355 101 5 chr11 25366011 25366228 -125417325 - MIR SINE MIR -6 256 19 216 0 0 0 chr11 25366333 25366357 -125417196 + (CA)n Simple_repeat Simple_repeat 2 25 0 183 156 0 0 chr11 25366898 25366930 -125416623 + CT-rich Low_complexity Low_complexity 64 95 0 2049 128 3 7 chr11 25370709 25371006 -125412547 + AluSx SINE Alu 3 298 -14 182 172 0 0 chr11 25371011 25371040 -125412513 - L2 LINE L2 -15 3257 3229 1118 185 164 91 chr11 25372895 25373065 -125410488 + MLT1C LTR MaLR 20 176 -291 420 20 0 0 chr11 25373065 25373114 -125410439 + (CA)n Simple_repeat Simple_repeat 2 50 0 1118 185 164 91 chr11 25373114 25373359 -125410194 + MLT1C LTR MaLR 176 465 -2 455 250 78 88 chr11 25373779 25374015 -125409538 + MLT1E2 LTR MaLR 54 254 -372 285 197 0 0 chr11 25374128 25374189 -125409364 + (TA)n Simple_repeat Simple_repeat 1 61 0 312 170 0 100 chr11 25374196 25374296 -125409257 - L1MC4 LINE L1 -1339 6703 6614 276 30 0 0 chr11 25374296 25374329 -125409224 + (CA)n Simple_repeat Simple_repeat 2 34 0 21 0 0 0 chr11 25374601 25374622 -125408931 + AT_rich Low_complexity Low_complexity 1 21 0 273 365 26 0 chr11 25376208 25376323 -125407230 - L2 LINE L2 0 3272 3155 27 0 0 0 chr11 25376342 25376369 -125407184 + AT_rich Low_complexity Low_complexity 1 27 0 379 328 16 0 chr11 25376492 25376614 -125406939 + MIR SINE MIR 8 131 -131 25 0 0 0 chr11 25377455 25377480 -125406073 + AT_rich Low_complexity Low_complexity 1 25 0 1549 222 49 2 chr11 25377509 25377986 -125405567 - L1MA9 LINE L1 -2 6310 5782 255 173 0 0 chr11 25377988 25378040 -125405513 + (TA)n Simple_repeat Simple_repeat 1 52 0 540 226 0 0 chr11 25378094 25378187 -125405366 + Tigger5 DNA MER2_type 2 94 -2229 914 155 126 0 chr11 25378204 25378378 -125405175 + Tigger5 DNA MER2_type 2123 2318 -5 2211 226 29 27 chr11 25378433 25379447 -125404106 - L1MA9 LINE L1 -538 5774 4758 2934 267 52 42 chr11 25380063 25380455 -125403098 + L1M4b LINE L1 425 811 -6048 2178 115 3 13 chr11 25380455 25380769 -125402784 + AluSx SINE Alu 1 311 -1 2934 267 52 42 chr11 25380769 25381433 -125402120 + L1M4b LINE L1 811 1492 -5367 1589 162 4 0 chr11 25381681 25381934 -125401619 + AluSx SINE Alu 8 261 -51 256 64 43 0 chr11 25382062 25382109 -125401444 + (TTTTG)n Simple_repeat Simple_repeat 1 49 0 201 348 170 9 chr11 25382183 25382295 -125401258 - L2 LINE L2 -2 3270 3141 190 301 60 0 chr11 25382321 25382404 -125401149 - MIR SINE MIR -41 221 134 221 56 0 28 chr11 25382635 25382671 -125400882 + (CAT)n Simple_repeat Simple_repeat 3 37 0 316 253 58 58 chr11 25382676 25382830 -125400723 - MIR SINE MIR -12 250 97 340 336 138 23 chr11 25383000 25383354 -125400199 - L2 LINE L2 -601 2713 2319 512 357 119 31 chr11 25385183 25385949 -125397604 + L2 LINE L2 2431 3279 -34 3656 211 40 63 chr11 25386101 25387413 -125396140 - L1MD1 LINE L1 -3 6633 5360 292 119 34 0 chr11 25387458 25387517 -125396036 + (TG)n Simple_repeat Simple_repeat 2 62 0 1023 276 47 3 chr11 25387522 25387902 -125395651 - L1MD1 LINE L1 -1201 5339 4943 572 292 29 5 chr11 25387905 25388114 -125395439 - L1MD1 LINE L1 -3393 3147 2934 3971 237 115 49 chr11 25388146 25388549 -125395004 - L1MD1 LINE L1 -5052 1488 1113 1800 143 3 20 chr11 25388549 25388842 -125394711 + AluSx SINE Alu 1 288 -24 3971 237 115 49 chr11 25388842 25388861 -125394692 - L1MD1 LINE L1 -5427 1113 1097 194 0 0 37 chr11 25388861 25388888 -125394665 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 3971 237 115 49 chr11 25388888 25389842 -125393711 - L1MD1 LINE L1 -5443 1097 21 1539 199 4 18 chr11 25390016 25390339 -125393214 - AluJo SINE Alu 0 324 6 1536 194 71 9 chr11 25390610 25390934 -125392619 + MER2 DNA MER2_type 1 344 0 765 213 171 4 chr11 25392984 25393144 -125390409 - AluJb SINE Alu -33 279 147 2031 70 17 17 chr11 25393144 25393443 -125390110 - L1PA3 LINE L1 -5 6150 5852 765 213 171 4 chr11 25393443 25393521 -125390032 - AluJb SINE Alu -165 147 1 362 302 7 47 chr11 25393625 25393774 -125389779 + MIR SINE MIR 49 183 -72 2060 114 0 10 chr11 25394575 25394872 -125388681 + AluSx SINE Alu 2 295 -17 252 289 96 10 chr11 25395074 25395178 -125388375 - MIR SINE MIR -75 187 75 195 146 0 0 chr11 25395889 25395930 -125387623 + (TTA)n Simple_repeat Simple_repeat 1 41 0 1545 194 17 31 chr11 25396069 25396420 -125387133 + L1MA9 LINE L1 5819 6164 -148 201 39 0 0 chr11 25396433 25396459 -125387094 + (GGAA)n Simple_repeat Simple_repeat 3 28 0 608 129 68 27 chr11 25396481 25396628 -125386925 + L1MA9 LINE L1 6159 6311 -1 324 287 132 7 chr11 25397069 25397205 -125386348 + MIR SINE MIR 67 219 -43 354 143 0 0 chr11 25399236 25399299 -125384254 + (CA)n Simple_repeat Simple_repeat 1 63 0 1979 146 7 0 chr11 25399614 25399923 -125383630 - AluSx SINE Alu -1 311 1 1587 214 28 3 chr11 25400152 25400516 -125383037 - L1PB4 LINE L1 -2 6154 5782 227 113 97 0 chr11 25400523 25400585 -125382968 + (TA)n Simple_repeat Simple_repeat 1 68 0 1672 146 2 11 chr11 25400585 25400874 -125382679 - L1ME LINE L1 -345 5817 5542 6979 215 36 30 chr11 25400981 25402816 -125380737 - L1PB4 LINE L1 -852 5294 3449 21 36 0 0 chr11 25404829 25404857 -125378696 + AT_rich Low_complexity Low_complexity 1 28 0 234 0 0 0 chr11 25404868 25404894 -125378659 + (TG)n Simple_repeat Simple_repeat 2 27 0 385 278 52 9 chr11 25404960 25405075 -125378478 + MIR SINE MIR 20 139 -123 908 169 0 0 chr11 25405963 25406123 -125377430 + L1PB4 LINE L1 5997 6156 0 180 0 0 0 chr11 25406350 25406370 -125377183 + (TG)n Simple_repeat Simple_repeat 2 21 0 538 269 149 25 chr11 25407304 25407505 -125376048 + MIR SINE MIR 5 230 -32 31 26 0 0 chr11 25407870 25407908 -125375645 + AT_rich Low_complexity Low_complexity 1 38 0 3706 177 57 32 chr11 25408090 25409049 -125374504 + MER11C LTR ERVK 1 1071 0 22 0 0 0 chr11 25409258 25409280 -125374273 + AT_rich Low_complexity Low_complexity 1 22 0 312 318 126 9 chr11 25409585 25409799 -125373754 + L1M4 LINE L1 3109 3347 -2799 2183 109 3 0 chr11 25410375 25410679 -125372874 - AluSq SINE Alu -8 305 1 994 223 103 4 chr11 25410943 25411216 -125372337 - MER67D LTR ERV1 -213 301 2 396 167 0 0 chr11 25411941 25412037 -125371516 + (TA)n Simple_repeat Simple_repeat 2 97 0 1068 203 0 5 chr11 25412041 25412233 -125371320 - AluJo SINE Alu -121 191 1 2077 110 14 0 chr11 25412925 25413206 -125370347 - AluSc SINE Alu -24 285 1 811 255 51 1 chr11 25413272 25413498 -125370055 - L1MC3 LINE L1 -203 6141 5981 1047 213 199 42 chr11 25413648 25414051 -125369502 - MER31B LTR ERV1 0 466 1 1000 99 0 105 chr11 25414145 25414316 -125369237 + AluSx SINE Alu 1 153 -159 480 298 84 71 chr11 25414788 25415110 -125368443 - L3 LINE CR1 -60 1517 1192 281 235 15 15 chr11 25466397 25466465 -125317088 - MER39 LTR ERV1 -380 327 260 25 31 0 0 chr11 25467204 25467236 -125316317 + AT_rich Low_complexity Low_complexity 1 32 0 2898 260 34 20 chr11 25467662 25468681 -125314872 + L1MB7 LINE L1 5141 6176 -8 2849 258 14 33 chr11 25469010 25470027 -125313526 + L1 LINE L1 3305 4301 -1845 1542 209 36 3 chr11 25470128 25470492 -125313061 - L1 LINE L1 -1678 4468 4093 4164 147 10 13 chr11 25470492 25471165 -125312388 + L1P3 LINE L1 11 681 -5780 573 305 114 35 chr11 25471378 25471654 -125311899 - L2 LINE L2 -1529 1785 1476 1753 211 11 11 chr11 25471654 25472019 -125311534 + MLT1A1 LTR MaLR 1 365 0 573 305 114 35 chr11 25472019 25472083 -125311470 - L2 LINE L2 -1838 1476 1418 262 353 22 43 chr11 25472338 25472522 -125311031 - LTR33 LTR ERVL -321 200 21 425 268 35 30 chr11 25472578 25472776 -125310777 + MLT2B1 LTR ERVL 2 200 -320 21 57 0 0 chr11 25473020 25473055 -125310498 + AT_rich Low_complexity Low_complexity 1 35 0 2027 127 3 0 chr11 25473242 25473534 -125310019 + AluSc SINE Alu 1 293 -16 1874 272 92 8 chr11 25473544 25474187 -125309366 + L1PBa LINE L1 128 824 -6039 5384 153 15 9 chr11 25474287 25475444 -125308109 + L1P3 LINE L1 4426 5589 -583 2334 50 0 3 chr11 25475605 25475931 -125307622 + AluY SINE Alu 1 325 0 406 254 19 51 chr11 25476467 25476576 -125306977 - MER31A LTR ERV1 0 543 432 1495 178 68 29 chr11 25476576 25476857 -125306696 + AluJb SINE Alu 1 292 -20 406 254 19 51 chr11 25476857 25476961 -125306592 - MER31A LTR ERV1 -111 432 263 6642 68 11 2 chr11 25477070 25478688 -125304865 + L1PA7 LINE L1 4521 6150 -4 25 31 0 0 chr11 25478720 25478752 -125304801 + AT_rich Low_complexity Low_complexity 1 32 0 645 223 56 9 chr11 25478771 25478986 -125304567 - L1 LINE L1 -2041 4105 3881 1033 315 130 31 chr11 25479445 25479647 -125303906 + L1MC4 LINE L1 6444 6625 -1417 265 24 48 0 chr11 25479647 25479689 -125303864 + (CATAT)n Simple_repeat Simple_repeat 2 45 0 1033 315 130 31 chr11 25479689 25480723 -125302830 + L1MC4 LINE L1 6625 7904 -138 219 167 0 0 chr11 25480742 25480784 -125302769 + (TATG)n Simple_repeat Simple_repeat 2 43 0 323 313 35 9 chr11 25480820 25480935 -125302618 + L1MC4 LINE L1 6615 6732 -1310 180 152 0 0 chr11 25480967 25481000 -125302553 + GA-rich Low_complexity Low_complexity 2 34 0 407 280 33 101 chr11 25481145 25481452 -125302101 - L1 LINE L1 -2609 3537 3252 372 330 104 31 chr11 25481577 25481865 -125301688 - L1M4 LINE L1 -1886 4260 3952 1975 168 28 33 chr11 25481879 25482243 -125301310 - THE1B LTR MaLR -2 362 1 10368 120 29 3 chr11 25482243 25483783 -125299770 - THE1B-int LTR MaLR 0 1580 1 2047 124 59 36 chr11 25483783 25484139 -125299414 - THE1B LTR MaLR 0 364 1 240 274 147 49 chr11 25484292 25485196 -125298357 - L1M4 LINE L1 -2369 3777 2785 44 88 0 0 chr11 25485470 25485584 -125297969 + AT_rich Low_complexity Low_complexity 1 114 0 401 275 81 12 chr11 25485584 25485744 -125297809 - L1M4 LINE L1 -3726 2420 2250 460 309 39 15 chr11 25486362 25486566 -125296987 - MLT1A1 LTR MaLR -13 352 144 1607 240 14 25 chr11 25487147 25487514 -125296039 - MLT1A2 LTR MaLR -11 363 1 21 57 0 0 chr11 25487575 25487610 -125295943 + AT_rich Low_complexity Low_complexity 1 35 0 300 237 48 145 chr11 25487886 25488072 -125295481 - MER5B DNA MER1_type -8 170 3 268 318 64 0 chr11 25489504 25489614 -125293939 + MIR SINE MIR 124 240 -22 384 321 130 16 chr11 25490424 25490608 -125292945 + MIR SINE MIR 58 262 0 1142 264 83 13 chr11 25491548 25491934 -125291619 - L1MC4 LINE L1 -253 7789 7377 24 67 0 0 chr11 25492106 25492151 -125291402 + AT_rich Low_complexity Low_complexity 1 45 0 224 300 70 75 chr11 25492193 25492420 -125291133 - MIR SINE MIR -35 227 2 278 384 23 0 chr11 25492747 25492880 -125290673 + MIR3 SINE MIR 28 163 -45 3184 112 0 0 chr11 25492912 25493387 -125290166 - L1PA8 LINE L1 -932 5214 4740 6639 84 3 1 chr11 25493387 25494357 -125289196 + L1PA8 LINE L1 5191 6162 -10 428 171 12 0 chr11 25495361 25495443 -125288110 + AluS SINE Alu 1 83 -230 2000 138 0 22 chr11 25495486 25495798 -125287755 - AluSx SINE Alu -7 305 1 345 115 115 26 chr11 25495858 25495936 -125287617 - MER2 DNA MER2_type -138 207 123 1172 82 33 49 chr11 25495944 25496128 -125287425 + L1PA8 LINE L1 5992 6172 0 449 153 14 0 chr11 25496977 25497049 -125286504 - MER2 DNA MER2_type -225 120 48 396 0 0 0 chr11 25497066 25497110 -125286443 + (TG)n Simple_repeat Simple_repeat 1 44 0 203 400 65 6 chr11 25497326 25497496 -125286057 + L2 LINE L2 2904 3083 -189 214 365 141 5 chr11 25497717 25497909 -125285644 + MIR SINE MIR 45 262 0 22 0 0 0 chr11 25497948 25497970 -125285583 + AT_rich Low_complexity Low_complexity 1 22 0 268 342 8 0 chr11 25498292 25498409 -125285144 + L1MC4 LINE L1 6895 7012 -1030 1971 128 3 0 chr11 25498417 25498705 -125284848 + AluSx SINE Alu 1 289 -23 23 0 0 0 chr11 25498705 25498728 -125284825 + AT_rich Low_complexity Low_complexity 1 23 0 26 50 0 0 chr11 25498798 25498838 -125284715 + AT_rich Low_complexity Low_complexity 1 40 0 2357 125 22 22 chr11 25499086 25499212 -125284341 - L1PA14 LINE L1 0 6161 6036 2313 62 3 26 chr11 25499212 25499517 -125284036 - AluY SINE Alu -13 298 1 2357 125 22 22 chr11 25499517 25499797 -125283756 - L1PA14 LINE L1 -124 6037 5755 1505 243 36 90 chr11 25499834 25500423 -125283130 - MER92B LTR ERV1 -77 559 3 23 0 0 0 chr11 25500498 25500521 -125283032 + AT_rich Low_complexity Low_complexity 1 23 0 264 197 13 26 chr11 25501228 25501304 -125282249 + L1ME3 LINE L1 42 116 -5954 726 316 18 18 chr11 25501390 25501668 -125281885 + MLT1H LTR MaLR 1 278 -271 23 78 0 0 chr11 25501825 25501876 -125281677 + AT_rich Low_complexity Low_complexity 1 51 0 514 275 100 46 chr11 25501948 25502337 -125281216 + L1ME3 LINE L1 3437 3846 -2234 274 223 175 19 chr11 25502365 25502468 -125281085 - MLT1F LTR MaLR -16 526 408 1962 47 63 4 chr11 25502491 25502777 -125280776 - AluY SINE Alu 0 313 13 390 274 144 5 chr11 25503167 25503382 -125280171 + L1ME3 LINE L1 3942 4186 -1894 551 294 90 22 chr11 25503417 25503784 -125279769 + L1ME3 LINE L1 4376 4767 -1313 24 32 0 0 chr11 25503787 25503818 -125279735 + AT_rich Low_complexity Low_complexity 1 31 0 1980 129 82 18 chr11 25504037 25504379 -125279174 - THE1B LTR MaLR 0 364 1 2017 138 3 0 chr11 25504438 25504729 -125278824 + AluSx SINE Alu 1 292 -20 1252 280 73 19 chr11 25504810 25505346 -125278207 + L1ME3 LINE L1 5198 5762 -334 1529 174 3 24 chr11 25505346 25505634 -125277919 + AluJo SINE Alu 1 282 -30 1576 190 3 7 chr11 25506136 25506425 -125277128 + AluJb SINE Alu 1 288 -24 247 308 76 26 chr11 25506456 25506797 -125276756 + L1MC/D LINE L1 4072 4429 -1717 326 297 109 38 chr11 25506829 25507142 -125276411 + L1MC/D LINE L1 4498 4832 -1314 205 200 0 0 chr11 25507251 25507291 -125276262 + (TA)n Simple_repeat Simple_repeat 1 40 0 414 235 61 62 chr11 25507508 25507553 -125276000 + L1MC/D LINE L1 5254 5298 -942 1569 195 19 75 chr11 25507553 25507964 -125275589 + MLT1B LTR MaLR 1 388 -2 414 235 61 62 chr11 25507964 25508183 -125275370 + L1MC/D LINE L1 5298 5514 -726 375 98 0 0 chr11 25508257 25508318 -125275235 + L1MA3 LINE L1 6245 6305 0 23 0 0 0 chr11 25508999 25509022 -125274531 + AT_rich Low_complexity Low_complexity 1 23 0 222 250 188 18 chr11 25509148 25509260 -125274293 + MIR SINE MIR 14 144 -118 238 261 43 14 chr11 25509267 25509336 -125274217 - MIR SINE MIR -52 210 140 200 312 128 16 chr11 25509876 25510001 -125273552 - MIR SINE MIR -45 217 79 209 179 0 0 chr11 25510158 25510197 -125273356 + (CA)n Simple_repeat Simple_repeat 2 40 0 390 346 35 48 chr11 25510249 25510477 -125273076 + L2 LINE L2 2560 2784 -530 834 113 127 7 chr11 25510617 25510767 -125272786 - THE1B LTR MaLR 0 364 197 345 347 111 11 chr11 25511667 25511857 -125271696 - MIR SINE MIR -22 240 32 288 130 0 0 chr11 25511964 25512010 -125271543 + (TGG)n Simple_repeat Simple_repeat 1 46 0 292 267 183 8 chr11 25512078 25512198 -125271355 - MIR SINE MIR -73 189 49 341 282 195 40 chr11 25514276 25514425 -125269128 - MER5A DNA MER1_type -8 181 10 345 284 99 0 chr11 25514772 25514913 -125268640 - MIR SINE MIR -23 239 85 1354 187 40 31 chr11 25515400 25515726 -125267827 + L1MA8 LINE L1 5791 6119 -172 715 251 0 0 chr11 25516027 25516206 -125267347 + L1PA8 LINE L1 5984 6162 -10 371 318 8 39 chr11 25516621 25516750 -125266803 - MER5B DNA MER1_type -49 129 5 271 309 55 27 chr11 25517261 25517371 -125266182 - MIR SINE MIR -64 144 32 22 80 0 0 chr11 25517598 25517648 -125265905 + AT_rich Low_complexity Low_complexity 1 50 0 22 0 0 0 chr11 25517942 25517964 -125265589 + AT_rich Low_complexity Low_complexity 1 22 0 319 317 67 0 chr11 25518247 25518367 -125265186 - L2 LINE L2 0 3313 3186 485 339 27 42 chr11 25519189 25519265 -125264288 + MIR SINE MIR 4 80 -182 2279 71 0 0 chr11 25519265 25519582 -125263971 - AluY SINE Alu 0 317 1 485 339 27 42 chr11 25519582 25519764 -125263789 + MIR SINE MIR 80 259 -3 216 209 0 0 chr11 25520746 25520789 -125262764 + (TA)n Simple_repeat Simple_repeat 2 44 0 348 94 0 0 chr11 25522211 25522264 -125261289 + (TG)n Simple_repeat Simple_repeat 2 54 0 296 253 33 22 chr11 25522492 25522583 -125260970 - MER5A DNA MER1_type 0 189 98 289 314 64 69 chr11 25522558 25522762 -125260791 + L2 LINE L2 2753 2955 -359 * 26 0 0 0 chr11 25522881 25522907 -125260646 + AT_rich Low_complexity Low_complexity 1 26 0 27 22 0 22 chr11 25524085 25524103 -125259450 + AT_rich Low_complexity Low_complexity 1 18 -26 2319 38 42 10 chr11 25524103 25524391 -125259162 - AluY SINE Alu -14 297 1 27 22 0 22 chr11 25524391 25524417 -125259136 + AT_rich Low_complexity Low_complexity 18 44 0 21 36 0 0 chr11 25525643 25525671 -125257882 + AT_rich Low_complexity Low_complexity 1 28 0 2369 94 0 7 chr11 25525901 25526209 -125257344 - AluSp SINE Alu -3 310 5 2219 93 0 3 chr11 25526224 25526514 -125257039 - AluY SINE Alu -22 289 1 717 357 116 13 chr11 25526622 25527322 -125256231 + L2 LINE L2 2551 3313 0 218 354 58 49 chr11 25528148 25528371 -125255182 - MIR SINE MIR -17 245 21 30 0 0 0 chr11 25528399 25528429 -125255124 + AT_rich Low_complexity Low_complexity 1 30 0 232 343 15 0 chr11 25528957 25529024 -125254529 - L2 LINE L2 0 3313 3246 196 321 83 0 chr11 25529797 25529881 -125253672 - MIR SINE MIR -61 201 111 1404 181 37 28 chr11 25530395 25530721 -125252832 + L1MA8 LINE L1 5791 6119 -172 307 341 132 49 chr11 25532222 25532609 -125250944 + L3 LINE CR1 1086 1504 -73 207 0 0 0 chr11 25533182 25533205 -125250348 + (TCTA)n Simple_repeat Simple_repeat 4 26 0 22 56 0 0 chr11 25533237 25533273 -125250280 + AT_rich Low_complexity Low_complexity 1 36 0 32 86 0 0 chr11 25533289 25533370 -125250183 + AT_rich Low_complexity Low_complexity 1 81 0 486 0 0 0 chr11 25533444 25533498 -125250055 + (TTCC)n Simple_repeat Simple_repeat 2 55 0 205 196 0 54 chr11 25533617 25533673 -125249880 + MIR SINE MIR 209 261 -1 356 296 45 22 chr11 25534112 25534291 -125249262 - MIR SINE MIR -4 258 76 308 324 27 18 chr11 25535620 25535731 -125247822 + MER5A DNA MER1_type 75 186 -3 1339 218 71 67 chr11 25535970 25536406 -125247147 - MER74A LTR ERVL 0 558 121 223 325 86 0 chr11 25537753 25537870 -125245683 + MIR SINE MIR 78 204 -58 2320 128 8 3 chr11 25538394 25538761 -125244792 - L1PB1 LINE L1 0 6867 6499 779 137 12 8 chr11 25538797 25539040 -125244513 + (TA)n Simple_repeat Simple_repeat 1 244 0 14092 197 21 14 chr11 25539040 25542627 -125240926 - L1PB1 LINE L1 -360 6507 2882 1995 143 0 3 chr11 25542627 25542948 -125240605 - AluSx SINE Alu 0 312 5 14092 197 21 14 chr11 25542948 25543246 -125240307 - L1PB1 LINE L1 -3985 2882 2588 18429 130 132 90 chr11 25543346 25547598 -125235955 - L1P LINE L1 -1705 4441 13 4986 178 46 15 chr11 25547598 25549606 -125233947 + L1PB4 LINE L1 4093 6151 -5 422 143 13 0 chr11 25549786 25549863 -125233690 + (TA)n Simple_repeat Simple_repeat 2 79 0 24 0 0 0 chr11 25549917 25549941 -125233612 + AT_rich Low_complexity Low_complexity 1 24 0 369 208 19 75 chr11 25550088 25550194 -125233359 + MIR SINE MIR 160 259 -3 22 35 0 0 chr11 25551132 25551161 -125232392 + AT_rich Low_complexity Low_complexity 1 29 0 268 181 84 48 chr11 25551545 25551628 -125231925 - MER39 LTR ERV1 -5 702 617 25 51 0 0 chr11 25551714 25551753 -125231800 + AT_rich Low_complexity Low_complexity 1 39 0 634 226 51 0 chr11 25551883 25552060 -125231493 + L1MB7 LINE L1 4959 5144 -1002 * 7176 176 27 35 chr11 25552058 25554065 -125229488 + L1P3 LINE L1 1 1997 -4464 1417 193 53 92 chr11 25554065 25554602 -125228951 - LTR22A LTR ERVK 0 458 1 3502 172 22 0 chr11 25554602 25555225 -125228328 + L1P3 LINE L1 1992 2628 -3833 3477 234 43 16 chr11 25555208 25556249 -125227304 + L1MB7 LINE L1 5114 6176 -8 * 328 215 13 0 chr11 25557040 25557119 -125226434 - MLT1K LTR MaLR -162 426 347 213 367 28 18 chr11 25557618 25557727 -125225826 + MIR SINE MIR 5 114 -148 195 333 0 0 chr11 25557759 25557813 -125225740 + MIR SINE MIR 209 262 0 433 224 16 0 chr11 25558188 25558313 -125225240 + (TG)n Simple_repeat Simple_repeat 2 128 0 2118 114 4 0 chr11 25558329 25558609 -125224944 - AluSx SINE Alu -18 294 14 189 393 0 0 chr11 25559288 25559349 -125224204 - L2 LINE L2 -208 3064 3004 1111 252 65 42 chr11 25560665 25561164 -125222389 + MER34B LTR ERV1 5 565 0 976 188 11 5 chr11 25561820 25562006 -125221547 + Tigger1 DNA MER2_type 1 187 -2231 897 128 0 0 chr11 25562006 25562159 -125221394 - AluSg/x SINE Alu 0 309 157 3124 155 95 10 chr11 25562160 25562773 -125220780 + Tigger1 DNA MER2_type 185 849 -1569 345 24 0 0 chr11 25563029 25563071 -125220482 + (CA)n Simple_repeat Simple_repeat 2 43 0 338 296 76 43 chr11 25563447 25563724 -125219829 - L1ME LINE L1 -307 5814 5529 25 65 0 0 chr11 25563761 25563807 -125219746 + AT_rich Low_complexity Low_complexity 1 46 0 337 357 14 29 chr11 25565384 25565524 -125218029 - MIR3 SINE MIR -69 139 2 333 369 15 46 chr11 25566274 25566469 -125217084 + MIR SINE MIR 20 208 -54 11076 175 118 12 chr11 25566807 25567235 -125216318 - L1PBa LINE L1 -3513 3349 2968 2188 122 0 3 chr11 25567235 25567558 -125215995 - AluSx SINE Alu 0 312 3 11076 175 118 12 chr11 25567558 25570037 -125213516 - L1PBa LINE L1 -3894 2968 128 2135 113 3 0 chr11 25570047 25570339 -125213214 - AluSc SINE Alu -16 293 1 208 269 0 0 chr11 25570373 25570425 -125213128 + (TA)n Simple_repeat Simple_repeat 1 52 0 996 190 19 9 chr11 25570960 25571171 -125212382 + MLT2B3 LTR ERVL 1 213 -341 1343 183 41 59 chr11 25571241 25571618 -125211935 + MLT2B3 LTR ERVL 192 554 0 24 0 0 0 chr11 25573285 25573309 -125210244 + AT_rich Low_complexity Low_complexity 1 24 0 375 335 7 0 chr11 25573763 25573915 -125209638 + HAL1 LINE L1 1399 1551 -956 28 0 0 0 chr11 25574420 25574448 -125209105 + AT_rich Low_complexity Low_complexity 1 28 0 792 225 88 4 chr11 25574792 25575079 -125208474 - MER21B LTR ERV1 -362 501 171 3091 219 13 14 chr11 25575079 25575706 -125207847 - MER4B-int LTR ERV1 -2348 1843 1218 777 183 0 0 chr11 25575753 25575879 -125207674 - FLAM_C SINE Alu -17 126 1 5250 178 50 33 chr11 25575883 25576446 -125207107 - MER4B-int LTR ERV1 -2546 4212 3660 2178 123 3 0 chr11 25576446 25576746 -125206807 + AluSq SINE Alu 1 301 -12 5250 178 50 33 chr11 25576746 25577135 -125206418 - MER4B-int LTR ERV1 -3098 3660 3237 4002 163 85 26 chr11 25577135 25577986 -125205567 + MER4D LTR ERV1 3 903 0 5250 178 50 33 chr11 25577986 25578143 -125205410 - MER4B-int LTR ERV1 -3521 3237 3084 2398 201 56 8 chr11 25578203 25578685 -125204868 - MER21A LTR ERV1 0 931 427 421 286 201 21 chr11 25578830 25579257 -125204296 + L1 LINE L1 2717 3220 -2926 339 312 145 40 chr11 25579456 25579780 -125203773 + L1 LINE L1 3441 3798 -2348 249 139 0 0 chr11 25579904 25579947 -125203606 + (TG)n Simple_repeat Simple_repeat 2 44 0 2440 112 135 105 chr11 25581422 25582014 -125201539 - MER4B LTR ERV1 0 610 1 944 276 133 13 chr11 25582746 25583061 -125200492 - LTR18A LTR ERVL 0 357 5 643 306 67 63 chr11 25583351 25583584 -125199969 + MLT1J LTR MaLR 1 232 -279 7818 26 6 0 chr11 25583584 25585282 -125198271 - L1PA3 LINE L1 -3 6152 4449 643 306 67 63 chr11 25585282 25585555 -125197998 + MLT1J LTR MaLR 232 509 -2 3537 128 17 25 chr11 25585899 25585930 -125197623 - L1M1 LINE L1 -4371 3194 3164 3735 104 5 19 chr11 25585930 25586506 -125197047 - L1MA2 LINE L1 0 6304 5737 3537 128 17 25 chr11 25586506 25587105 -125196448 - L1M1 LINE L1 -4401 3164 2569 5464 101 7 20 chr11 25587117 25587426 -125196127 - L1PA8A LINE L1 -1 6130 5818 258 56 0 0 chr11 25587426 25587462 -125196091 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 1798 97 101 0 chr11 25587462 25587719 -125195834 - AluY SINE Alu -28 283 1 5464 101 7 20 chr11 25587719 25588243 -125195310 - L1PA8A LINE L1 -311 5820 5307 3959 190 42 7 chr11 25588236 25589008 -125194545 - L1M1 LINE L1 -6755 810 12 * 347 236 42 0 chr11 25589011 25589083 -125194470 - MER5A DNA MER1_type -114 75 1 363 78 0 0 chr11 25589214 25589265 -125194288 + (TG)n Simple_repeat Simple_repeat 2 52 0 29 28 0 0 chr11 25590564 25590600 -125192953 + AT_rich Low_complexity Low_complexity 1 36 0 2009 189 100 23 chr11 25590777 25591247 -125192306 - L1MC1 LINE L1 -19 6314 5809 597 174 22 22 chr11 25591259 25591437 -125192116 + GA-rich Low_complexity Low_complexity 3 180 0 341 286 94 16 chr11 25591443 25591635 -125191918 - L2 LINE L2 -1209 2105 1899 389 270 40 24 chr11 25592782 25592908 -125190645 + MIR SINE MIR 129 256 -6 459 313 133 9 chr11 25593774 25594007 -125189546 - MIR SINE MIR 0 262 1 21 36 0 0 chr11 25594528 25594556 -125188997 + AT_rich Low_complexity Low_complexity 1 28 0 316 183 0 0 chr11 25595163 25595223 -125188330 - HsTC2 DNA Tc2 -1835 63 4 276 167 0 19 chr11 25595311 25595365 -125188188 - MLT1A1 LTR MaLR -269 96 44 3469 168 39 68 chr11 25595389 25595662 -125187891 + MER54B LTR ERVL 61 340 -453 266 0 0 29 chr11 25595662 25595697 -125187856 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 3469 168 39 68 chr11 25595697 25596177 -125187376 + MER54B LTR ERVL 340 792 -1 22 0 0 0 chr11 25596975 25596997 -125186556 + AT_rich Low_complexity Low_complexity 1 22 0 2121 114 24 32 chr11 25597147 25597525 -125186028 + THE1C LTR MaLR 1 375 0 186 43 0 0 chr11 25599369 25599392 -125184161 + (T)n Simple_repeat Simple_repeat 1 23 0 301 328 174 24 chr11 25599523 25599770 -125183783 + L1MC/D LINE L1 5353 5636 -2172 197 136 0 45 chr11 25599813 25599857 -125183696 + (CATATA)n Simple_repeat Simple_repeat 2 43 0 27 0 0 0 chr11 25600894 25600921 -125182632 + AT_rich Low_complexity Low_complexity 1 27 0 268 406 104 0 chr11 25602667 25602869 -125180684 + L2 LINE L2 2690 2912 -402 231 300 0 0 chr11 25603360 25603420 -125180133 + L2 LINE L2 3213 3272 0 264 309 64 45 chr11 25604529 25604639 -125178914 + MIR3 SINE MIR 44 155 -53 296 318 93 13 chr11 25604851 25605002 -125178551 - MIR SINE MIR -69 193 31 408 273 30 38 chr11 25605236 25605368 -125178185 + MIR SINE MIR 98 228 -34 23 33 0 0 chr11 25605507 25605537 -125178016 + AT_rich Low_complexity Low_complexity 1 30 0 285 291 60 34 chr11 25605741 25605858 -125177695 - MIR3 SINE MIR -2 206 87 26 0 0 0 chr11 25606037 25606063 -125177490 + AT_rich Low_complexity Low_complexity 1 26 0 2411 76 0 0 chr11 25607047 25607348 -125176205 - AluY SINE Alu -9 302 2 582 262 142 21 chr11 25607997 25608230 -125175323 - MIR SINE MIR 0 262 2 2310 134 27 61 chr11 25608332 25608773 -125174780 + MSTB LTR MaLR 1 426 0 480 251 107 74 chr11 25610044 25610259 -125173294 + L2 LINE L2 1975 2196 -1118 662 267 98 36 chr11 25610288 25610422 -125173131 - L2 LINE L2 -700 2614 2490 824 153 0 7 chr11 25610422 25610566 -125172987 + L1PA15 LINE L1 6019 6161 -4 662 267 98 36 chr11 25610566 25610708 -125172845 - L2 LINE L2 -824 2490 2321 682 349 31 66 chr11 25610730 25611214 -125172339 - MLT2F LTR ERVL -13 650 184 401 327 69 27 chr11 25611249 25611509 -125172044 + L2 LINE L2 2968 3238 -75 368 215 0 0 chr11 25611680 25611759 -125171794 + MER116 DNA Mariner 1 79 -1 215 200 0 0 chr11 25611821 25611856 -125171697 + (TG)n Simple_repeat Simple_repeat 2 36 0 210 116 23 23 chr11 25612813 25612856 -125170697 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 33 56 0 0 chr11 25613450 25613504 -125170049 + AT_rich Low_complexity Low_complexity 1 54 0 1681 204 63 37 chr11 25614221 25614581 -125168972 + MER39 LTR ERV1 260 634 -73 2104 105 10 26 chr11 25614581 25614887 -125168666 - AluSx SINE Alu -11 301 1 1681 204 63 37 chr11 25614887 25614957 -125168596 + MER39 LTR ERV1 634 701 -6 361 194 0 0 chr11 25615692 25615759 -125167794 + MER63 DNA MER1_type 683 749 -313 303 268 12 12 chr11 25615764 25615846 -125167707 + MER63 DNA MER1_type 980 1061 0 293 221 197 33 chr11 25616218 25616340 -125167213 + LTR16C LTR ERVL 350 491 0 1571 138 0 63 chr11 25616590 25616658 -125166895 + AluSx SINE Alu 45 116 -196 2129 128 33 19 chr11 25616658 25617017 -125166536 + THE1B LTR MaLR 1 364 0 1571 138 0 63 chr11 25617017 25617216 -125166337 + AluSx SINE Alu 116 295 -17 1269 212 111 55 chr11 25617243 25617727 -125165826 + MER39 LTR ERV1 9 705 -2 273 219 0 31 chr11 25617852 25617916 -125165637 + MER21B LTR ERV1 1 62 -801 2644 152 122 50 chr11 25618307 25618994 -125164559 - L1MB3 LINE L1 -264 5919 5185 832 214 3 5 chr11 25619012 25619331 -125164222 - MLT1A1 LTR MaLR 0 365 1 1043 200 8 12 chr11 25619331 25619581 -125163972 + L1MB3 LINE L1 5928 6176 -7 1620 245 52 23 chr11 25619630 25620144 -125163409 + L1ME3A LINE L1 5642 6170 0 254 315 34 0 chr11 25620155 25620244 -125163309 - MIR SINE MIR -111 151 60 21 57 0 0 chr11 25620583 25620618 -125162935 + AT_rich Low_complexity Low_complexity 1 35 0 180 97 0 0 chr11 25621490 25621521 -125162032 + (T)n Simple_repeat Simple_repeat 1 31 0 184 228 88 35 chr11 25621647 25621704 -125161849 - L2 LINE L2 -2482 832 773 385 334 15 6 chr11 25622290 25622450 -125161103 - MIR SINE MIR -67 141 29 2095 105 24 0 chr11 25622452 25622746 -125160807 - AluSg SINE Alu -9 301 1 192 277 84 25 chr11 25622753 25622872 -125160681 + MIR SINE MIR 72 197 -65 1144 218 83 0 chr11 25623573 25623825 -125159728 + AluJo SINE Alu 9 281 -31 21 57 0 0 chr11 25623833 25623868 -125159685 + AT_rich Low_complexity Low_complexity 1 35 0 205 161 0 0 chr11 25623914 25623945 -125159608 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 498 324 31 18 chr11 25624478 25624700 -125158853 + MIR SINE MIR 35 259 -3 622 335 69 4 chr11 25624868 25625113 -125158440 - MIR SINE MIR -1 261 1 212 292 52 21 chr11 25625539 25625635 -125157918 - MIR SINE MIR -156 106 8 360 0 0 0 chr11 25626058 25626098 -125157455 + (CA)n Simple_repeat Simple_repeat 1 40 0 268 287 35 17 chr11 25626399 25626514 -125157039 + MARNA DNA Mariner 246 362 -224 24 0 0 0 chr11 25626517 25626541 -125157012 + AT_rich Low_complexity Low_complexity 1 24 0 256 296 160 0 chr11 25629984 25630109 -125153444 + MER67D LTR ERV1 370 514 0 265 380 64 11 chr11 25630973 25631160 -125152393 + MIR SINE MIR 54 250 -12 2045 129 3 3 chr11 25631196 25631491 -125152062 - AluSc SINE Alu -14 295 1 24 32 0 0 chr11 25631983 25632014 -125151539 + AT_rich Low_complexity Low_complexity 1 31 0 263 286 0 0 chr11 25632466 25632529 -125151024 - L2 LINE L2 -820 2494 2432 1142 313 131 33 chr11 25632560 25632836 -125150717 - L2 LINE L2 -964 2350 2102 2016 136 0 0 chr11 25632836 25633122 -125150431 + AluSx SINE Alu 1 286 -26 1233 136 0 0 chr11 25632946 25633122 -125150431 + AluSg/x SINE Alu 111 309 0 208 0 0 0 chr11 25633122 25633145 -125150408 + (TAAA)n Simple_repeat Simple_repeat 2 156 0 1142 313 131 33 chr11 25633145 25633685 -125149868 - L2 LINE L2 -1212 2102 1473 1981 190 11 8 chr11 25633685 25634049 -125149504 + MLT1A1 LTR MaLR 1 365 0 1142 313 131 33 chr11 25634049 25634096 -125149457 - L2 LINE L2 -1841 1473 1432 265 321 30 23 chr11 25634112 25634243 -125149310 - LTR33 LTR ERVL -4 517 386 311 341 16 23 chr11 25634400 25634529 -125149024 - LTR33 LTR ERVL -354 167 40 183 242 0 0 chr11 25634573 25634606 -125148947 - L2 LINE L2 -1898 1416 1384 1160 227 14 101 chr11 25634607 25635064 -125148489 + MLT2D LTR ERVL 3 520 0 401 240 0 158 chr11 25635064 25635152 -125148401 - L2 LINE L2 -1925 1389 1289 2327 108 0 0 chr11 25635152 25635459 -125148094 + AluSg SINE Alu 1 307 -3 401 240 0 158 chr11 25635459 25635616 -125147937 - L2 LINE L2 -2025 1289 1183 579 146 0 10 chr11 25635618 25635714 -125147839 + HSMAR2 DNA Mariner 253 347 -955 447 227 31 10 chr11 25635715 25635812 -125147741 + FLAM_A SINE Alu 1 99 -43 381 159 55 5 chr11 25636910 25637131 -125146422 + (TA)n Simple_repeat Simple_repeat 1 232 0 31 0 0 0 chr11 25637423 25637454 -125146099 + AT_rich Low_complexity Low_complexity 1 31 0 281 347 0 10 chr11 25637789 25637887 -125145666 + MIR3 SINE MIR 99 195 -13 226 245 0 0 chr11 25640909 25640958 -125142595 - L2 LINE L2 -3 3310 3262 235 261 0 0 chr11 25640988 25641034 -125142519 + polypurine Low_complexity Low_complexity 2 47 0 272 234 360 9 chr11 25641687 25641798 -125141755 + MER5A DNA MER1_type 37 186 -3 669 67 0 0 chr11 25642400 25642490 -125141063 + L1PA6 LINE L1 6062 6151 -3 206 103 0 26 chr11 25643027 25643066 -125140487 + (CAT)n Simple_repeat Simple_repeat 2 39 0 1120 260 62 52 chr11 25643508 25644008 -125139545 - MLT1D LTR MaLR 0 505 1 298 245 9 28 chr11 25644939 25645045 -125138508 + CT-rich Low_complexity Low_complexity 4 107 0 1496 204 9 46 chr11 25645197 25645521 -125138032 - AluJo SINE Alu 0 312 1 251 182 0 0 chr11 25645641 25645685 -125137868 - L2 LINE L2 -2 3311 3268 274 224 26 13 chr11 25645753 25645829 -125137724 + L1MB1 LINE L1 6097 6173 -16 2318 70 3 3 chr11 25646347 25646645 -125136908 + AluY SINE Alu 1 298 -13 21 57 0 0 chr11 25648589 25648624 -125134929 + AT_rich Low_complexity Low_complexity 1 35 0 281 169 15 15 chr11 25648655 25648720 -125134833 + LTR60 LTR ERV1 4 68 -518 351 113 0 0 chr11 25648724 25648777 -125134776 - MLT2A1 LTR ERVL -1 443 391 296 130 81 0 chr11 25648781 25648942 -125134611 + (TA)n Simple_repeat Simple_repeat 1 174 0 317 158 68 0 chr11 25648966 25649279 -125134274 + (TA)n Simple_repeat Simple_repeat 1 334 0 279 0 0 0 chr11 25649278 25649309 -125134244 + (GA)n Simple_repeat Simple_repeat 2 32 0 * 2551 109 16 11 chr11 25649320 25649697 -125133856 - MLT2A1 LTR ERVL -65 379 1 1025 244 84 19 chr11 25649814 25650125 -125133428 + LTR43 LTR ERV1 132 462 -140 234 226 87 35 chr11 25650176 25650291 -125133262 + LTR43 LTR ERV1 462 582 -20 960 211 61 76 chr11 25650607 25651012 -125132541 + MLT1C LTR MaLR 8 378 -12 2164 126 22 22 chr11 25651627 25651991 -125131562 - THE1B LTR MaLR 0 364 1 2129 129 0 3 chr11 25653552 25653862 -125129691 + AluSx SINE Alu 3 311 -1 5591 157 35 3 chr11 25654114 25655123 -125128430 - L1MA6 LINE L1 -6 6294 5254 1822 123 87 0 chr11 25655234 25655510 -125128043 + AluSx SINE Alu 1 300 -12 923 263 7 25 chr11 25656065 25656346 -125127207 + MER93b LTR ERV1 98 373 0 241 194 0 28 chr11 25656545 25656576 -125126977 + A-rich Low_complexity Low_complexity 2 32 -39 1690 153 0 29 chr11 25656576 25656857 -125126696 + AluSx SINE Alu 3 275 -37 241 194 0 28 chr11 25656857 25656897 -125126656 + A-rich Low_complexity Low_complexity 32 71 0 826 178 0 0 chr11 25657583 25657718 -125125835 + AluJo SINE Alu 1 135 -177 2337 90 3 0 chr11 25657718 25658028 -125125525 + AluY SINE Alu 1 311 0 794 180 1 0 chr11 25658065 25658221 -125125332 + L1 LINE L1 3830 3986 -2160 644 217 31 0 chr11 25658801 25658930 -125124623 - FLAM_C SINE Alu -8 135 3 24 32 0 0 chr11 25658949 25658980 -125124573 + AT_rich Low_complexity Low_complexity 1 31 0 1722 155 7 35 chr11 25658980 25659270 -125124283 - AluJb SINE Alu -30 282 1 24 77 0 0 chr11 25660454 25660506 -125123047 + AT_rich Low_complexity Low_complexity 1 52 0 30 69 0 0 chr11 25660577 25660635 -125122918 + AT_rich Low_complexity Low_complexity 1 58 0 219 333 46 0 chr11 25660720 25660807 -125122746 + MER5B DNA MER1_type 87 177 -1 847 186 102 8 chr11 25661122 25661358 -125122195 - MER33 DNA MER1_type -35 289 32 30 45 0 0 chr11 25661621 25661665 -125121888 + AT_rich Low_complexity Low_complexity 1 44 0 226 258 101 22 chr11 25661970 25662059 -125121494 - MLT1J LTR MaLR -24 487 392 2111 152 87 20 chr11 25662155 25662556 -125120997 + MSTA LTR MaLR 1 428 0 260 321 0 47 chr11 25713217 25713323 -125070230 - L3 LINE CR1 -195 1382 1282 270 355 64 6 chr11 25713479 25713651 -125069902 - MIR SINE MIR -15 247 66 191 369 49 49 chr11 25713718 25713943 -125069610 - L3 LINE CR1 -448 1129 905 1463 230 142 64 chr11 25713946 25714140 -125069413 + L1MB7 LINE L1 4304 4481 -1665 2363 87 0 0 chr11 25714140 25714449 -125069104 + AluSc SINE Alu 1 309 0 1463 230 142 64 chr11 25714449 25714650 -125068903 + L1MB7 LINE L1 4481 4665 -1481 352 62 0 125 chr11 25714650 25714730 -125068823 + L1MA1 LINE L1 6233 6302 0 1463 230 142 64 chr11 25714730 25715149 -125068404 + L1MB7 LINE L1 4665 5183 -963 940 262 80 34 chr11 25715154 25715540 -125068013 + L1MCa LINE L1 18 421 -6005 875 247 32 4 chr11 25715571 25715822 -125067731 + L1MB7 LINE L1 5567 5824 -342 421 227 84 40 chr11 25715824 25716056 -125067497 + L1MB7 LINE L1 5951 6183 -1 181 256 0 0 chr11 25716912 25716955 -125066598 - MER5B DNA MER1_type -111 67 25 434 307 12 54 chr11 25716986 25717152 -125066401 - MER5B DNA MER1_type -19 159 1 21 0 0 0 chr11 25717979 25718000 -125065553 + AT_rich Low_complexity Low_complexity 1 21 0 1742 149 25 4 chr11 25718301 25718576 -125064977 + AluSx SINE Alu 3 283 -29 1733 154 7 7 chr11 25718592 25718872 -125064681 + AluSx SINE Alu 1 280 -32 197 65 32 0 chr11 25718874 25718905 -125064648 + (TAA)n Simple_repeat Simple_repeat 2 33 0 988 129 6 0 chr11 25719726 25719889 -125063664 - L1MA4A LINE L1 -4 6299 6136 39 22 0 0 chr11 25719895 25719941 -125063612 + AT_rich Low_complexity Low_complexity 1 46 0 3638 166 22 15 chr11 25720636 25721372 -125062181 + L1MA4A LINE L1 5382 6122 -181 259 203 127 13 chr11 25721376 25721455 -125062098 + L1MA4A LINE L1 6189 6276 -27 36 89 0 8 chr11 25721720 25721779 -125061774 + AT_rich Low_complexity Low_complexity 1 59 -64 5810 118 0 0 chr11 25721779 25723158 -125060395 - L1PA7 LINE L1 -3 6151 4836 36 89 0 8 chr11 25723158 25723222 -125060331 + AT_rich Low_complexity Low_complexity 59 123 0 2518 215 25 7 chr11 25723309 25723876 -125059677 - L1MD3 LINE L1 -5 7990 7414 1118 57 0 0 chr11 25724788 25724928 -125058625 - AluY SINE Alu -9 302 163 2487 55 0 10 chr11 25725522 25725834 -125057719 + AluY SINE Alu 1 309 -2 30 0 0 0 chr11 25726286 25726316 -125057237 + AT_rich Low_complexity Low_complexity 1 30 0 207 0 0 0 chr11 25726659 25726682 -125056871 + (GAAAA)n Simple_repeat Simple_repeat 3 25 0 256 62 21 21 chr11 25727274 25727322 -125056231 + (TAAA)n Simple_repeat Simple_repeat 3 50 0 983 251 36 4 chr11 25728015 25728266 -125055287 + AluJo SINE Alu 1 259 -53 366 146 0 0 chr11 25728718 25728800 -125054753 + (A)n Simple_repeat Simple_repeat 1 82 0 22 56 0 0 chr11 25729327 25729363 -125054190 + AT_rich Low_complexity Low_complexity 1 36 0 5075 34 2 5 chr11 25730903 25731522 -125052031 - L1PA4 LINE L1 0 6155 5539 326 284 23 0 chr11 25731854 25731942 -125051611 - L1MC4 LINE L1 -1339 6703 6614 214 131 0 66 chr11 25731996 25732118 -125051435 + (TA)n Simple_repeat Simple_repeat 1 114 0 2423 76 0 16 chr11 25732223 25732539 -125051014 - AluY SINE Alu 0 311 1 1687 194 3 0 chr11 25732542 25732846 -125050707 - L1PB3 LINE L1 -68 6086 5782 236 283 9 38 chr11 25732846 25732952 -125050601 + (TA)n Simple_repeat Simple_repeat 2 104 0 4569 188 19 21 chr11 25732956 25734025 -125049528 - L1PB3 LINE L1 -362 5792 4729 186 43 0 0 chr11 25734025 25734048 -125049505 + (TTG)n Simple_repeat Simple_repeat 2 24 0 4569 188 19 21 chr11 25734048 25734652 -125048901 - L1PB3 LINE L1 -1425 4729 4125 473 239 0 0 chr11 25734658 25734750 -125048803 - MLT1F1 LTR MaLR -442 125 34 441 178 31 141 chr11 25734751 25734914 -125048639 - L1MD3 LINE L1 -881 7114 6970 1903 174 7 0 chr11 25734917 25735227 -125048326 - AluSx SINE Alu 0 312 1 1313 158 39 28 chr11 25735237 25735522 -125048031 - L1MC1 LINE L1 -2 6331 6044 236 310 0 0 chr11 25735619 25735690 -125047863 - MIR SINE MIR -113 149 79 33 25 0 0 chr11 25735801 25735841 -125047712 + AT_rich Low_complexity Low_complexity 1 40 0 589 294 43 5 chr11 25737251 25737438 -125046115 + MLT1L LTR MaLR 417 610 -5 207 0 0 0 chr11 25737745 25737768 -125045785 + (TG)n Simple_repeat Simple_repeat 2 24 0 231 364 81 29 chr11 25738266 25738475 -125045078 + L2 LINE L2 2827 3046 -226 208 273 200 27 chr11 25738604 25738714 -125044839 + L2 LINE L2 3143 3271 -1 7266 165 16 21 chr11 25739129 25740580 -125042973 - L1P LINE L1 -2597 3549 2106 22 0 0 0 chr11 25740684 25740706 -125042847 + AT_rich Low_complexity Low_complexity 1 22 0 263 374 43 0 chr11 25740856 25741015 -125042538 - L2 LINE L2 -356 2916 2770 22 0 0 0 chr11 25741152 25741174 -125042379 + AT_rich Low_complexity Low_complexity 1 22 0 234 62 0 0 chr11 25741532 25741564 -125041989 + (TTG)n Simple_repeat Simple_repeat 2 33 0 264 379 0 0 chr11 25741783 25741878 -125041675 - MIR SINE MIR -148 114 20 1149 220 55 42 chr11 25741986 25742368 -125041185 - MLT1B LTR MaLR -3 387 1 216 0 0 0 chr11 25742808 25742832 -125040721 + (A)n Simple_repeat Simple_repeat 1 24 0 21 36 0 0 chr11 25743332 25743360 -125040193 + AT_rich Low_complexity Low_complexity 1 28 0 377 249 35 35 chr11 25743676 25743849 -125039704 + (CATATA)n Simple_repeat Simple_repeat 4 176 0 24 0 0 0 chr11 25743985 25744009 -125039544 + AT_rich Low_complexity Low_complexity 1 24 0 27 49 0 0 chr11 25744294 25744335 -125039218 + AT_rich Low_complexity Low_complexity 1 41 0 334 324 144 14 chr11 25745070 25745292 -125038261 + MIR SINE MIR 12 262 0 230 265 0 0 chr11 25746007 25746056 -125037497 + L2 LINE L2 3219 3267 -5 25 83 0 0 chr11 25746512 25746572 -125036981 + AT_rich Low_complexity Low_complexity 1 60 0 278 316 0 0 chr11 25746904 25746980 -125036573 - L2 LINE L2 -298 2974 2899 2558 102 45 0 chr11 25747344 25747725 -125035828 - MER41B LTR ERV1 -236 399 2 5875 110 16 17 chr11 25747905 25748881 -125034672 + L1PA14 LINE L1 5185 6159 -2 196 74 0 0 chr11 25749795 25749822 -125033731 + MER5B DNA MER1_type 8 34 -144 356 234 19 56 chr11 25749897 25750004 -125033549 + MER5B DNA MER1_type 75 177 -1 181 133 133 22 chr11 25750370 25750415 -125033138 + L3 LINE CR1 369 418 -1159 234 0 0 0 chr11 25750625 25750651 -125032902 + (TA)n Simple_repeat Simple_repeat 1 26 0 411 375 45 15 chr11 25751774 25752041 -125031512 - L2 LINE L2 -899 2415 2141 1301 234 110 11 chr11 25752251 25752623 -125030930 - MER63B DNA MER1_type 0 436 28 279 0 0 0 chr11 25752637 25752668 -125030885 + (TG)n Simple_repeat Simple_repeat 2 32 0 28 29 0 0 chr11 25752849 25752884 -125030669 + AT_rich Low_complexity Low_complexity 1 35 0 628 331 20 28 chr11 25753009 25753257 -125030296 + MIR SINE MIR 4 249 -13 413 286 56 31 chr11 25753953 25754114 -125029439 - MER5B DNA MER1_type -4 174 10 706 264 146 65 chr11 25755008 25755406 -125028147 - LTR16B LTR ERVL -13 451 22 341 245 41 10 chr11 25756106 25756204 -125027349 + MLT1G LTR MaLR 2 102 -488 25 75 0 0 chr11 25756418 25756471 -125027082 + AT_rich Low_complexity Low_complexity 1 53 0 221 293 13 13 chr11 25756955 25757030 -125026523 + L2 LINE L2 2986 3060 -212 4841 115 8 0 chr11 25757072 25758163 -125025390 - L1PB2 LINE L1 -1 6150 5158 376 336 16 8 chr11 25758582 25758704 -125024849 + L2 LINE L2 3191 3313 0 353 318 13 0 chr11 25759570 25759724 -125023829 - L1MEc LINE L1 -3671 3286 3131 23 0 0 0 chr11 25759750 25759773 -125023780 + AT_rich Low_complexity Low_complexity 1 23 0 1671 231 35 79 chr11 25759785 25759929 -125023624 - L1M4 LINE L1 -914 5232 5083 2091 109 0 0 chr11 25759929 25760203 -125023350 - AluSg SINE Alu -36 274 1 1671 231 35 79 chr11 25760203 25760795 -125022758 - L1M4 LINE L1 -1063 5083 4528 307 288 21 68 chr11 25761072 25761151 -125022402 - L1MEc LINE L1 -4465 2673 2592 1653 184 0 16 chr11 25761151 25761456 -125022097 + AluJb SINE Alu 1 300 -12 307 288 21 68 chr11 25761456 25761567 -125021986 - L1MEc LINE L1 -4546 2592 2492 484 318 52 9 chr11 25761568 25761801 -125021752 - L1MEc LINE L1 -4719 2419 2177 441 317 91 2 chr11 25762025 25762269 -125021284 - L1MEc LINE L1 -5237 1757 1360 182 176 20 0 chr11 25762320 25762371 -125021182 + CT-rich Low_complexity Low_complexity 1 52 0 287 141 16 0 chr11 25762602 25762666 -125020887 + T-rich Low_complexity Low_complexity 1 65 0 9584 32 1 0 chr11 25762666 25764581 -125018972 - L1PA3 LINE L1 -3 6152 4235 28 48 0 0 chr11 25764937 25764979 -125018574 + AT_rich Low_complexity Low_complexity 1 42 0 704 180 11 17 chr11 25765376 25765554 -125017999 + GA-rich Low_complexity Low_complexity 3 179 0 724 117 63 0 chr11 25765593 25765704 -125017849 - AluSc SINE Alu -187 122 5 709 126 0 0 chr11 25765811 25765914 -125017639 - LTR12 LTR ERV1 0 714 612 336 221 12 0 chr11 25765914 25766000 -125017553 - LTR30 LTR ERV1 -80 642 556 1954 70 3 127 chr11 25766000 25766330 -125017223 - LTR12 LTR ERV1 -425 289 1 5576 95 1 11 chr11 25766333 25767113 -125016440 - HERV9 LTR ERV1 -2 8397 7626 2350 182 116 64 chr11 25767111 25767968 -125015585 - Harlequin LTR ERV1 -5156 1740 840 * 28393 96 16 8 chr11 25767935 25772749 -125010804 - Harlequin LTR ERV1 -3419 4980 40 708 159 7 76 chr11 25772717 25772862 -125010691 - pTR5 LTR ERV1 -2001 437 303 * 406 263 17 0 chr11 25772864 25772982 -125010571 - LTR30 LTR ERV1 -79 643 524 1727 61 7 138 chr11 25772982 25773279 -125010274 - LTR12 LTR ERV1 -456 258 1 2100 138 0 0 chr11 25773365 25773681 -125009872 + AluSx SINE Alu 2 317 0 186 339 36 0 chr11 25773683 25773739 -125009814 - MIR SINE MIR -182 80 23 575 237 12 64 chr11 25774080 25774253 -125009300 - MER52A LTR ERV1 0 1755 1592 318 319 90 11 chr11 25774326 25774514 -125009039 - MER52A LTR ERV1 -346 1409 1207 863 226 38 74 chr11 25774647 25775083 -125008470 - MER52A LTR ERV1 -143 898 284 915 236 161 41 chr11 25775798 25775882 -125007671 + MLT1D LTR MaLR 46 119 -386 810 271 83 20 chr11 25775882 25776232 -125007321 - MLT1A2 LTR MaLR 0 374 3 915 236 161 41 chr11 25776232 25776558 -125006995 + MLT1D LTR MaLR 119 505 0 2041 149 37 0 chr11 25777027 25777350 -125006203 - MER1B DNA MER1_type -2 335 1 1620 142 72 48 chr11 25777635 25777966 -125005587 + MER44D DNA MER2_type 1 609 0 202 362 59 20 chr11 25778447 25778599 -125004954 - MIR SINE MIR -85 177 20 180 0 0 0 chr11 25778737 25778757 -125004796 + (A)n Simple_repeat Simple_repeat 1 20 0 31 26 0 0 chr11 25779301 25779339 -125004214 + AT_rich Low_complexity Low_complexity 1 38 0 296 325 54 65 chr11 25779341 25779769 -125003784 + L1PA16 LINE L1 979 1401 -6173 7814 229 37 68 chr11 25780067 25785668 -124997885 + L1PA16 LINE L1 2182 7593 -11 267 271 0 14 chr11 25786664 25786734 -124996819 - MIR SINE MIR -108 154 86 1221 253 33 45 chr11 25786766 25787162 -124996391 - MLT1D LTR MaLR -2 503 113 381 278 16 21 chr11 25787205 25787399 -124996154 + L1ME3A LINE L1 2841 3033 -3113 2149 116 3 0 chr11 25787789 25788081 -124995472 + AluSg SINE Alu 3 295 -15 359 65 74 19 chr11 25788081 25788189 -124995364 + (TA)n Simple_repeat Simple_repeat 1 114 0 410 311 101 28 chr11 25788260 25788907 -124994646 + L1ME3A LINE L1 5257 5950 -220 2105 125 3 0 chr11 25789319 25789616 -124993937 - AluSx SINE Alu -14 298 1 2783 84 41 5 chr11 25789703 25790120 -124993433 - L1MA1 LINE L1 -10 6292 5861 1283 159 24 12 chr11 25790429 25790680 -124992873 - L1MA3 LINE L1 -319 5981 5738 1966 125 21 6 chr11 25790680 25791006 -124992547 + L1MA3 LINE L1 5973 6305 0 2265 88 0 3 chr11 25791187 25791482 -124992071 - AluSg1 SINE Alu -15 294 1 216 172 0 0 chr11 25792170 25792228 -124991325 + A-rich Low_complexity Low_complexity 1 58 0 242 280 27 13 chr11 25792386 25792461 -124991092 - MIR SINE MIR -122 140 65 10658 47 2 0 chr11 25792775 25794858 -124988695 - L1PA5 LINE L1 -8 6146 4057 9427 56 15 2 chr11 25794858 25796106 -124987447 + L1P LINE L1 2572 3835 -2311 1078 105 21 26 chr11 25796258 25796449 -124987104 + AluSc SINE Alu 59 248 -61 24 32 0 0 chr11 25796489 25796520 -124987033 + AT_rich Low_complexity Low_complexity 1 31 0 204 238 0 0 chr11 25798045 25798087 -124985466 - MIR SINE MIR -81 127 86 360 319 47 61 chr11 25799337 25799531 -124984022 - MIR SINE MIR -6 256 64 1775 200 22 8 chr11 25799531 25799891 -124983662 - MLT1A1 LTR MaLR 0 365 1 360 319 47 61 chr11 25799891 25799909 -124983644 - MIR SINE MIR -198 64 47 259 256 0 35 chr11 25800158 25800244 -124983309 + CT-rich Low_complexity Low_complexity 1 83 0 194 328 79 34 chr11 25800399 25800547 -124983006 - MIR SINE MIR -53 155 1 197 223 10 48 chr11 25801482 25801585 -124981968 + GA-rich Low_complexity Low_complexity 4 102 0 1716 187 6 16 chr11 25801684 25801999 -124981554 + AluJb SINE Alu 1 312 0 1093 214 0 0 chr11 25802535 25802741 -124980812 - MER2 DNA MER2_type -139 206 1 230 262 127 40 chr11 25803157 25803283 -124980270 - MIR SINE MIR -13 249 113 223 250 162 34 chr11 25804074 25804222 -124979331 - L3 LINE CR1 -159 1418 1252 222 359 11 0 chr11 25804563 25804655 -124978898 + L2 LINE L2 3170 3262 -10 325 299 94 0 chr11 25804789 25804916 -124978637 - MIR SINE MIR -49 213 75 2355 96 14 0 chr11 25806563 25806919 -124976634 - L1PA7 LINE L1 -790 5356 4996 5832 70 14 8 chr11 25806919 25807714 -124975839 + L1PA7 LINE L1 5354 6154 0 22 35 0 0 chr11 25808556 25808585 -124974968 + AT_rich Low_complexity Low_complexity 1 29 0 243 343 90 18 chr11 25808609 25808826 -124974727 + MIR SINE MIR 20 255 -7 566 218 269 35 chr11 25809787 25809984 -124973569 - MLT1E1 LTR MaLR -405 249 7 425 19 19 0 chr11 25810144 25810198 -124973355 + (TG)n Simple_repeat Simple_repeat 2 56 0 939 58 0 0 chr11 25810666 25810787 -124972766 + L1PA4 LINE L1 6032 6152 -3 1507 76 0 0 chr11 25811013 25811210 -124972343 + L1PA5 LINE L1 5955 6151 -3 31 26 0 0 chr11 25811210 25811248 -124972305 + AT_rich Low_complexity Low_complexity 1 38 0 386 346 23 8 chr11 25811423 25811553 -124972000 - MIR SINE MIR -108 154 23 498 283 58 31 chr11 25811593 25811784 -124971769 + L2 LINE L2 3116 3311 -2 683 258 51 36 chr11 25812291 25812566 -124970987 - LTR4 LTR ERV1 0 596 318 506 255 15 60 chr11 25812758 25812958 -124970595 - LTR4 LTR ERV1 -396 200 10 342 360 104 9 chr11 25813233 25813444 -124970109 - MIR SINE MIR -20 242 12 23 33 0 0 chr11 25814814 25814844 -124968709 + AT_rich Low_complexity Low_complexity 1 30 0 35 24 0 0 chr11 25815361 25815403 -124968150 + AT_rich Low_complexity Low_complexity 1 42 0 1543 158 0 99 chr11 25815403 25815726 -124967827 - AluJb SINE Alu -21 291 1 649 194 13 0 chr11 25815910 25816065 -124967488 + GA-rich Low_complexity Low_complexity 3 159 0 189 94 0 0 chr11 25816115 25816147 -124967406 + (T)n Simple_repeat Simple_repeat 1 32 0 2217 72 11 0 chr11 25816841 25817177 -124966376 - AluY SINE Alu 0 339 1 333 248 104 24 chr11 25819490 25819615 -124963938 + Tigger5 DNA MER2_type 1 135 -2188 1013 179 18 28 chr11 25819616 25819834 -124963719 + Tigger5 DNA MER2_type 2105 2320 -3 2302 88 3 13 chr11 25820411 25820718 -124962835 - AluSq SINE Alu -9 304 1 295 279 77 0 chr11 25822209 25822252 -124961301 + L2 LINE L2 3201 3239 -74 484 145 30 46 chr11 25822252 25822383 -124961170 - L1MA7 LINE L1 0 6291 6163 295 279 77 0 chr11 25822383 25822443 -124961110 + L2 LINE L2 3239 3312 -1 183 129 0 0 chr11 25822573 25822604 -124960949 + (T)n Simple_repeat Simple_repeat 1 31 0 2258 60 3 3 chr11 25822931 25823244 -124960309 - AluY SINE Alu 0 313 1 247 289 36 12 chr11 25823431 25823514 -124960039 - L2 LINE L2 0 3313 3229 * 465 324 46 33 chr11 25823512 25823753 -124959800 - MIR SINE MIR -6 256 13 29 47 0 0 chr11 25823828 25823871 -124959682 + AT_rich Low_complexity Low_complexity 1 43 0 21 36 0 0 chr11 25825972 25826000 -124957553 + AT_rich Low_complexity Low_complexity 1 28 0 343 319 96 26 chr11 25826559 25826788 -124956765 + MIR SINE MIR 15 259 -3 273 29 0 0 chr11 25826881 25826915 -124956638 + (TG)n Simple_repeat Simple_repeat 1 34 0 996 293 51 32 chr11 25827957 25828475 -124955078 + L2 LINE L2 2608 3138 -175 317 96 0 19 chr11 25829233 25829285 -124954268 - MADE1 DNA Mariner -29 51 1 184 303 182 0 chr11 25829856 25829955 -124953598 + L2 LINE L2 2701 2817 -497 1610 301 65 18 chr11 25829984 25830307 -124953246 + L1M4 LINE L1 3553 3859 -2287 2568 36 3 7 chr11 25830307 25830614 -124952939 + AluY SINE Alu 1 306 -5 1610 301 65 18 chr11 25830614 25831277 -124952276 + L1M4 LINE L1 3859 4585 -1561 210 133 67 17 chr11 25831894 25831954 -124951599 + (TTATA)n Simple_repeat Simple_repeat 1 63 0 284 313 24 0 chr11 25831983 25832066 -124951487 - MIR SINE MIR -144 118 34 22 80 0 0 chr11 25832143 25832193 -124951360 + AT_rich Low_complexity Low_complexity 1 50 0 181 303 15 15 chr11 25833209 25833275 -124950278 - MIR SINE MIR -82 180 115 647 295 124 5 chr11 25833283 25833500 -124950053 + MER92C LTR ERV1 1 243 -311 440 267 55 24 chr11 25833551 25833716 -124949837 + MER92C LTR ERV1 383 552 -2 180 0 0 0 chr11 25834231 25834251 -124949302 + (A)n Simple_repeat Simple_repeat 1 20 0 1193 161 274 9 chr11 25834251 25834568 -124948985 - MSTA LTR MaLR -27 401 1 2080 153 11 19 chr11 25834679 25835057 -124948496 + THE1C LTR MaLR 1 375 0 23 33 0 0 chr11 25835930 25835960 -124947593 + AT_rich Low_complexity Low_complexity 1 30 0 27 29 0 0 chr11 25836114 25836148 -124947405 + AT_rich Low_complexity Low_complexity 1 34 0 411 318 42 21 chr11 25836676 25836865 -124946688 - L2 LINE L2 -440 2874 2682 193 119 48 0 chr11 25837039 25837081 -124946472 + (TA)n Simple_repeat Simple_repeat 2 45 0 1472 198 27 34 chr11 25837285 25837583 -124945970 - AluJo SINE Alu -16 296 1 597 163 0 0 chr11 25837770 25837862 -124945691 + MLT1A1 LTR MaLR 2 93 -272 288 0 0 0 chr11 25837899 25837931 -124945622 + (TG)n Simple_repeat Simple_repeat 2 33 0 27 81 0 0 chr11 25839273 25839335 -124944218 + AT_rich Low_complexity Low_complexity 1 62 0 1280 94 133 0 chr11 25839660 25839863 -124943690 - MER30 DNA MER1_type 0 230 1 300 320 111 57 chr11 25839864 25840108 -124943445 - L1MC/D LINE L1 -2065 5743 5487 21 71 0 0 chr11 25840155 25840197 -124943356 + AT_rich Low_complexity Low_complexity 1 42 0 1306 194 76 0 chr11 25840510 25840773 -124942780 + AluJo SINE Alu 5 287 -25 30 0 0 0 chr11 25840773 25840803 -124942750 + AT_rich Low_complexity Low_complexity 1 30 0 713 185 8 0 chr11 25840805 25840935 -124942618 + FLAM_C SINE Alu 1 131 -2 23 33 0 0 chr11 25841426 25841456 -124942097 + AT_rich Low_complexity Low_complexity 1 30 0 2908 190 47 72 chr11 25841605 25842643 -124940910 - L1MB8 LINE L1 -1 6177 5149 384 261 39 13 chr11 25842643 25842796 -124940757 - L1MB8 LINE L1 -3798 2348 2192 1097 191 53 114 chr11 25842822 25843183 -124940370 + MLT1A1 LTR MaLR 19 357 -8 718 307 59 32 chr11 25843190 25843965 -124939588 - L1MEc LINE L1 -4121 2275 1480 1845 177 122 8 chr11 25844057 25844441 -124939112 - MSTA LTR MaLR 0 428 1 7938 199 21 12 chr11 25844441 25846077 -124937476 - MSTA-int LTR MaLR 0 1651 1 1678 154 171 14 chr11 25846084 25846434 -124937119 - MSTA LTR MaLR -14 414 10 324 297 67 41 chr11 25846438 25846804 -124936749 - L1MEc LINE L1 -5016 1380 953 522 189 11 0 chr11 25847705 25847795 -124935758 + AluJ/FLAM SINE Alu 1 91 -221 294 328 38 8 chr11 25848060 25848191 -124935362 + L2 LINE L2 3167 3301 -12 257 297 69 10 chr11 25848629 25848730 -124934823 + MIR3 SINE MIR 93 199 -9 1097 157 35 5 chr11 25848916 25849113 -124934440 - L1PA16 LINE L1 0 6166 5964 5354 202 19 28 chr11 25849114 25851035 -124932518 - L1PA16 LINE L1 -330 5836 3934 24 0 0 0 chr11 25851045 25851069 -124932484 + AT_rich Low_complexity Low_complexity 1 24 0 3023 247 102 61 chr11 25851890 25852598 -124930955 - L1MC4a LINE L1 0 7808 7131 200 35 35 0 chr11 25852598 25852627 -124930926 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 3023 247 102 61 chr11 25852627 25852937 -124930616 - L1MC4a LINE L1 -677 7131 6835 2829 16 0 0 chr11 25852937 25853255 -124930298 + AluYb8 SINE Alu 1 318 0 3023 247 102 61 chr11 25853255 25853682 -124929871 - L1MC4a LINE L1 -973 6835 6302 2497 48 0 3 chr11 25854759 25855071 -124928482 + AluY SINE Alu 1 311 0 333 100 0 0 chr11 25855657 25855707 -124927846 + (TG)n Simple_repeat Simple_repeat 1 50 0 394 240 136 45 chr11 25856555 25856709 -124926844 + MIR SINE MIR 20 187 -75 348 293 62 16 chr11 25857484 25857616 -124925937 + MIR3 SINE MIR 25 165 -43 317 322 55 33 chr11 25858376 25858559 -124924994 + MIR SINE MIR 10 196 -66 2937 300 67 20 chr11 25859811 25860969 -124922584 - ERVL LTR ERVL -2232 3532 2320 1527 311 104 45 chr11 25861010 25861870 -124921683 - ERVL LTR ERVL -3469 2224 1267 1872 133 61 19 chr11 25861870 25862230 -124921323 - THE1C LTR MaLR 0 375 1 1527 311 104 45 chr11 25862230 25862279 -124921274 - ERVL LTR ERVL -4426 1267 1222 423 325 89 0 chr11 25862283 25862474 -124921079 + MER3 DNA MER1_type 2 209 0 1685 294 47 26 chr11 25862788 25863403 -124920150 - MLT2E LTR ERVL 0 628 1 435 349 92 4 chr11 25864376 25864605 -124918948 + MIR SINE MIR 14 262 0 225 239 310 21 chr11 25865682 25865824 -124917729 - MIR3 SINE MIR -3 205 23 246 128 0 0 chr11 25866062 25866101 -124917452 + (T)n Simple_repeat Simple_repeat 1 39 0 847 226 58 0 chr11 25866112 25866302 -124917251 - MLT1B LTR MaLR -176 214 14 371 292 0 0 chr11 25866311 25866400 -124917153 - MLT1J LTR MaLR -292 219 131 3019 40 3 8 chr11 25867170 25867550 -124916003 + L1PA7 LINE L1 5774 6151 -3 28 29 0 0 chr11 25867622 25867657 -124915896 + AT_rich Low_complexity Low_complexity 1 35 0 31 44 0 0 chr11 25867703 25867748 -124915805 + AT_rich Low_complexity Low_complexity 1 45 0 25 31 0 0 chr11 25867935 25867967 -124915586 + AT_rich Low_complexity Low_complexity 1 32 0 294 106 0 0 chr11 25867972 25868019 -124915534 + (T)n Simple_repeat Simple_repeat 1 47 0 4545 201 38 9 chr11 25868028 25869158 -124914395 - L1MC1 LINE L1 -178 6435 5255 387 0 0 0 chr11 25869158 25869201 -124914352 + (TG)n Simple_repeat Simple_repeat 2 44 0 4545 201 38 9 chr11 25869201 25869541 -124914012 - L1MC1 LINE L1 -1358 5255 4926 3008 251 35 48 chr11 25869568 25870541 -124913012 - L1MC1 LINE L1 -2338 4088 3130 2094 64 37 3 chr11 25870541 25870839 -124912714 - L1PA10 LINE L1 -3 6165 5858 3008 251 35 48 chr11 25870839 25870967 -124912586 - L1MC1 LINE L1 -3296 3130 3002 * 6656 242 47 47 chr11 25870965 25873597 -124909956 - L1MB2 LINE L1 -163 6008 3377 2222 105 0 3 chr11 25873597 25873902 -124909651 - AluSx SINE Alu 0 312 9 6656 242 47 47 chr11 25873902 25874654 -124908899 - L1MB2 LINE L1 -2794 3377 2627 674 180 29 100 chr11 25874642 25874881 -124908672 - L1MC1 LINE L1 -5316 1110 889 * 2178 165 8 3 chr11 25874882 25875239 -124908314 + THE1B LTR MaLR 6 364 0 1600 123 8 0 chr11 25875239 25875490 -124908063 + THE1B-int LTR MaLR 1 253 -1327 1318 253 115 10 chr11 25875492 25875891 -124907662 - L1MC1 LINE L1 -5945 481 41 180 111 0 0 chr11 25876558 25876585 -124906968 + (TG)n Simple_repeat Simple_repeat 2 28 0 245 222 0 22 chr11 25876710 25876800 -124906753 + (TATG)n Simple_repeat Simple_repeat 3 90 0 1513 185 105 3 chr11 25876814 25877128 -124906425 - MER7A DNA MER2_type 0 346 3 304 372 67 12 chr11 25878767 25878832 -124904721 + MER5A DNA MER1_type 10 70 -119 1961 125 34 3 chr11 25878832 25878960 -124904593 + AluSx SINE Alu 1 124 -188 378 0 0 0 chr11 25878960 25879002 -124904551 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 1961 125 34 3 chr11 25879002 25879168 -124904385 + AluSx SINE Alu 124 304 -8 304 372 67 12 chr11 25879168 25879266 -124904287 + MER5A DNA MER1_type 70 182 -7 432 344 147 36 chr11 25879277 25879745 -124903808 - L3 LINE CR1 -83 1494 975 31 76 0 0 chr11 25880859 25880925 -124902628 + AT_rich Low_complexity Low_complexity 1 66 0 37161 35 24 1 chr11 25880925 25886344 -124897209 - L1PA3 LINE L1 -4 6151 606 208 261 45 23 chr11 25886596 25886684 -124896869 + L2 LINE L2 3183 3272 0 686 185 14 11 chr11 25887699 25887985 -124895568 + GA-rich Low_complexity Low_complexity 1 287 0 344 331 124 0 chr11 25888734 25888879 -124894674 + MER5A DNA MER1_type 26 188 -1 194 344 11 43 chr11 25889755 25889848 -124893705 + MIR SINE MIR 51 140 -122 547 176 35 99 chr11 25890212 25890354 -124893199 + LTR8A LTR ERV1 595 727 0 573 328 21 16 chr11 25890354 25890546 -124893007 + HUERS-P1 LTR ERV1 1 193 -6070 715 168 54 18 chr11 25890547 25890714 -124892839 - L1M3 LINE L1 -686 5482 5310 846 227 0 0 chr11 25890714 25890890 -124892663 - L1M3 LINE L1 -1123 5023 4848 908 346 29 48 chr11 25890891 25891249 -124892304 - L1M3d LINE L1 -5380 511 165 1636 175 0 55 chr11 25891249 25891575 -124891978 - AluJb SINE Alu -4 308 1 908 346 29 48 chr11 25891575 25891736 -124891817 - L1M3d LINE L1 -5726 165 2 27 49 0 0 chr11 25891781 25891822 -124891731 + AT_rich Low_complexity Low_complexity 1 41 0 29 47 0 0 chr11 25891945 25891988 -124891565 + AT_rich Low_complexity Low_complexity 1 43 0 4496 196 21 2 chr11 25892181 25893077 -124890476 - L1MA4A LINE L1 -4 6299 5387 5965 150 30 23 chr11 25893871 25894048 -124889505 - L1MA2 LINE L1 0 7723 7549 5221 128 18 0 chr11 25894048 25895147 -124888406 - L1PA10 LINE L1 -2 6166 5055 5965 150 30 23 chr11 25895147 25896888 -124886665 - L1MA2 LINE L1 -174 7549 5791 17605 179 33 42 chr11 25896912 25900384 -124883169 - L1MA2 LINE L1 -3695 3870 368 271 0 25 25 chr11 25900384 25900424 -124883129 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 17605 179 33 42 chr11 25900424 25900567 -124882986 - L1MA2 LINE L1 -7197 368 225 430 103 0 0 chr11 25900567 25900635 -124882918 - MER41A LTR ERV1 -87 467 400 17605 179 33 42 chr11 25900635 25900835 -124882718 - L1MA2 LINE L1 -7340 225 17 2044 113 3 0 chr11 25900847 25901164 -124882389 - AluY SINE Alu 0 318 1 192 40 0 0 chr11 25902590 25902615 -124880938 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 1516 175 11 28 chr11 25902616 25902902 -124880651 - AluJo SINE Alu -31 281 1 252 291 62 88 chr11 25903274 25903482 -124880071 + MIR SINE MIR 22 214 -48 189 275 0 0 chr11 25903488 25903528 -124880025 - MIR SINE MIR -72 190 151 255 267 47 0 chr11 25903535 25903621 -124879932 - L1MA4A LINE L1 -23 6280 6191 4196 182 23 23 chr11 25903626 25903668 -124879885 - L1MA4A LINE L1 -181 6122 6082 2863 97 68 0 chr11 25903668 25904092 -124879461 - MLT2A2 LTR ERVL 0 453 1 4196 182 23 23 chr11 25904092 25905476 -124878077 - L1MA4A LINE L1 -221 6082 4696 1475 173 26 29 chr11 25905513 25905819 -124877734 - L1PA15 LINE L1 -3 6162 5858 2402 126 70 7 chr11 25905846 25906260 -124877293 - L1PA14 LINE L1 -250 5911 5472 6469 48 0 1 chr11 25906372 25907182 -124876371 - L1PA14 LINE L1 -853 5293 4485 4510 238 101 86 chr11 25907221 25909616 -124873937 - L1PA15-16 LINE L1 -964 5885 3529 326 98 0 16 chr11 25909616 25909677 -124873876 + (TA)n Simple_repeat Simple_repeat 2 61 0 4510 238 101 86 chr11 25909677 25910239 -124873314 - L1PA15-16 LINE L1 -3320 3529 2977 207 0 0 0 chr11 25910239 25910262 -124873291 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 4510 238 101 86 chr11 25910262 25911122 -124872431 - L1PA15-16 LINE L1 -3872 2977 2136 1948 142 33 0 chr11 25911122 25911425 -124872128 - AluSq SINE Alu 0 313 1 4510 238 101 86 chr11 25911425 25911522 -124872031 - L1PA15-16 LINE L1 -4713 2136 2042 1032 93 20 0 chr11 25911523 25911673 -124871880 - MER75 DNA T2_type -1 503 351 1860 152 17 0 chr11 25911677 25911973 -124871580 - AluSx SINE Alu -7 305 5 1140 249 9 0 chr11 25911980 25912306 -124871247 - L1M2 LINE L1 -4943 1906 1578 1414 145 29 13 chr11 25912316 25912572 -124870981 - L1PA10 LINE L1 0 6163 5897 799 53 0 18 chr11 25912570 25912684 -124870869 + L1P LINE L1 5254 5365 -766 * 3202 318 11 58 chr11 25912665 25914068 -124869485 - L1M2 LINE L1 -5249 1600 264 529 278 60 0 chr11 25914081 25914232 -124869321 - MIR SINE MIR -99 163 4 33 25 0 0 chr11 25914525 25914565 -124868988 + AT_rich Low_complexity Low_complexity 1 40 0 254 308 67 33 chr11 25915698 25915818 -124867735 + LTR16A LTR ERVL 94 217 -233 755 321 91 45 chr11 25915971 25916544 -124867009 + HERVL LTR ERVL 109 707 -4289 1791 307 92 72 chr11 25916692 25918003 -124865550 + HERVL LTR ERVL 901 2236 -2760 1568 349 45 29 chr11 25918636 25919730 -124863823 + HERVL LTR ERVL 3724 4834 -820 402 359 58 22 chr11 25920296 25920608 -124862945 + LTR16A LTR ERVL 21 343 -107 4126 180 46 58 chr11 25920763 25922062 -124861491 - L1MA4 LINE L1 -6 6294 5007 286 321 60 11 chr11 25922196 25922380 -124861173 - MER76 LTR ERV -33 655 463 7948 208 11 21 chr11 25923127 25924984 -124858569 - L1 LINE L1 -836 5310 3472 321 115 0 0 chr11 25925428 25925480 -124858073 - L1M LINE L1 -938 5364 5313 956 139 23 0 chr11 25925480 25925653 -124857900 + L1MA1 LINE L1 6006 6182 -120 338 136 0 0 chr11 25925655 25925714 -124857839 + L1MA2 LINE L1 6246 6304 0 22 0 0 0 chr11 25927203 25927225 -124856328 + AT_rich Low_complexity Low_complexity 1 22 0 1125 173 13 4 chr11 25928713 25928938 -124854615 + L1MA4 LINE L1 5644 5870 -430 477 334 46 84 chr11 25928964 25929311 -124854242 - L2 LINE L2 -10 3262 2929 246 32 0 0 chr11 25929394 25929425 -124854128 + (TA)n Simple_repeat Simple_repeat 2 32 0 512 289 89 67 chr11 25929565 25930071 -124853482 - LTR33 LTR ERVL 0 521 5 23 54 0 0 chr11 25931121 25931158 -124852395 + AT_rich Low_complexity Low_complexity 1 37 0 198 0 0 0 chr11 25932542 25932564 -124850989 + (TG)n Simple_repeat Simple_repeat 1 22 0 21 0 0 0 chr11 25932579 25932600 -124850953 + AT_rich Low_complexity Low_complexity 1 21 0 1410 185 70 0 chr11 25932611 25932854 -124850699 - AluSg SINE Alu -45 265 6 448 315 60 37 chr11 25933308 25933870 -124849683 - L1MEc LINE L1 -4576 1820 1246 540 199 44 72 chr11 25933976 25934177 -124849376 + L1MA8 LINE L1 6110 6312 0 216 182 23 0 chr11 25934904 25934948 -124848605 - L2 LINE L2 -4 3309 3265 295 315 134 35 chr11 25936167 25936399 -124847154 + MLT1L LTR MaLR 189 443 -172 7391 70 7 0 chr11 25936649 25938016 -124845537 - L1P2 LINE L1 -394 5760 4383 2512 153 44 12 chr11 25938717 25939220 -124844333 - L1MA4 LINE L1 0 6300 5782 311 179 9 0 chr11 25939220 25939326 -124844227 + (TA)n Simple_repeat Simple_repeat 1 107 0 2500 188 20 44 chr11 25939326 25940122 -124843431 - L1MA4 LINE L1 -508 5792 5006 395 323 59 5 chr11 25940250 25940436 -124843117 - MER76 LTR ERV -30 658 463 260 256 13 13 chr11 25940856 25940934 -124842619 - HERVL40 LTR ERVL -2249 3281 3204 189 0 0 0 chr11 25941675 25941696 -124841857 + (TG)n Simple_repeat Simple_repeat 1 21 0 558 280 0 0 chr11 25943193 25943311 -124840242 - FLAM_A SINE Alu -14 119 2 1042 277 87 25 chr11 25943953 25944357 -124839196 - L2 LINE L2 -1871 1443 1015 191 176 118 78 chr11 25944642 25944693 -124838860 + L2 LINE L2 3246 3298 -15 45 55 0 0 chr11 25945666 25945739 -124837814 + AT_rich Low_complexity Low_complexity 1 73 0 6636 114 31 15 chr11 25946075 25947129 -124836424 - MER11C LTR ERVK 0 1071 1 233 228 8 114 chr11 25947179 25947302 -124836251 - MIR SINE MIR -49 213 104 358 331 8 0 chr11 25947476 25947603 -124835950 - MIR SINE MIR -11 251 124 24 0 0 0 chr11 25947999 25948023 -124835530 + AT_rich Low_complexity Low_complexity 1 24 0 377 289 142 19 chr11 25948311 25948522 -124835031 + L2 LINE L2 2527 2763 -551 330 280 77 49 chr11 25948735 25948878 -124834675 - L1ME LINE L1 -5653 417 271 275 181 24 24 chr11 25949450 25949533 -124834020 - L1PA16 LINE L1 0 6166 6084 1520 121 23 19 chr11 25949633 25949890 -124833663 - L1PA16 LINE L1 -325 5841 5584 204 200 0 0 chr11 25950065 25950100 -124833453 + polypyrimidine Low_complexity Low_complexity 1 35 0 232 295 0 0 chr11 25950863 25950924 -124832629 + MER5A DNA MER1_type 129 189 0 230 217 0 0 chr11 25950972 25951018 -124832535 + L2 LINE L2 3268 3313 0 202 367 31 10 chr11 25952643 25952741 -124830812 - MIR3 SINE MIR -45 163 64 885 272 75 70 chr11 25952742 25953154 -124830399 + MLT2B1 LTR ERVL 3 416 -48 200 182 0 36 chr11 25953175 25953230 -124830323 + (CATA)n Simple_repeat Simple_repeat 4 56 0 1516 189 0 82 chr11 25953466 25953831 -124829722 - MER7A DNA MER2_type -13 333 1 294 330 10 0 chr11 25953848 25953948 -124829605 + MER5A DNA MER1_type 9 109 -80 2205 152 11 3 chr11 25954609 25954970 -124828583 + THE1B LTR MaLR 1 364 0 1227 325 41 20 chr11 25955190 25955683 -124827870 + L1M3d LINE L1 8 510 -5381 * 2521 277 95 33 chr11 25955652 25956986 -124826567 + L1 LINE L1 255 1373 -4518 1906 256 10 4 chr11 25956998 25957490 -124826063 + L1 LINE L1 3429 3923 -2047 453 296 107 33 chr11 25957509 25957752 -124825801 + L2 LINE L2 3019 3279 -34 32 43 0 0 chr11 25958187 25958233 -124825320 + AT_rich Low_complexity Low_complexity 1 46 0 1590 248 8 86 chr11 25959024 25959169 -124824384 + MLT2B1 LTR ERVL 1 156 -364 2218 152 66 22 chr11 25959169 25959577 -124823976 - MSTA LTR MaLR 0 428 3 1590 248 8 86 chr11 25959577 25959952 -124823601 + MLT2B1 LTR ERVL 156 480 -40 1473 158 63 14 chr11 25960497 25960782 -124822771 - AluSc SINE Alu -1 308 10 762 283 61 24 chr11 25961653 25961900 -124821653 + MIR SINE MIR 7 262 0 25 0 0 0 chr11 25962028 25962053 -124821500 + AT_rich Low_complexity Low_complexity 1 25 0 205 325 121 0 chr11 25963198 25963281 -124820272 + L2 LINE L2 3206 3298 -15 315 212 0 0 chr11 25963991 25964076 -124819477 + (TA)n Simple_repeat Simple_repeat 2 86 0 332 229 0 62 chr11 25964078 25964174 -124819379 - L1MC4 LINE L1 -1339 6703 6614 198 174 0 0 chr11 25964182 25964228 -124819325 + (TA)n Simple_repeat Simple_repeat 2 47 0 332 229 0 62 chr11 25964234 25964330 -124819223 - L1MC4 LINE L1 -1339 6703 6614 327 171 0 0 chr11 25964336 25964412 -124819141 + (TA)n Simple_repeat Simple_repeat 2 77 0 338 300 0 0 chr11 25964414 25964504 -124819049 - L1MC4 LINE L1 -1339 6703 6614 486 197 0 0 chr11 25964509 25964646 -124818907 + (TA)n Simple_repeat Simple_repeat 2 138 0 474 170 0 0 chr11 25965358 25965452 -124818101 + G-rich Low_complexity Low_complexity 5 98 0 24 32 0 0 chr11 25965743 25965774 -124817779 + AT_rich Low_complexity Low_complexity 1 31 0 2059 110 14 0 chr11 25965855 25966147 -124817406 - AluSp SINE Alu -17 296 1 204 229 0 0 chr11 25966318 25966353 -124817200 - L2 LINE L2 -16 3297 3263 358 287 148 5 chr11 25966804 25967013 -124816540 - L1MEc LINE L1 -1395 4820 4582 9048 39 1 0 chr11 25967350 25969222 -124814331 + L1PA4 LINE L1 4272 6148 -7 32 0 0 0 chr11 25969222 25969254 -124814299 + AT_rich Low_complexity Low_complexity 1 32 0 1005 291 39 28 chr11 25969393 25969926 -124813627 - L1MEc LINE L1 -1817 4398 3860 1186 269 57 29 chr11 25970091 25970813 -124812740 - L1MEc LINE L1 -2840 3375 2634 1970 292 85 42 chr11 25971038 25972550 -124811003 - L1MEc LINE L1 -3639 2576 1000 1760 214 28 3 chr11 25972550 25972906 -124810647 - MLT1A1 LTR MaLR 0 365 1 1970 292 85 42 chr11 25972906 25973215 -124810338 - L1MEc LINE L1 -5215 1000 706 225 215 32 21 chr11 25974685 25974778 -124808775 + (TA)n Simple_repeat Simple_repeat 2 95 0 422 359 6 12 chr11 25974857 25975024 -124808529 - MIR SINE MIR -70 192 27 234 269 60 37 chr11 25975281 25975415 -124808138 + MIR SINE MIR 113 249 -13 377 351 0 8 chr11 25975627 25975761 -124807792 + MLT2E LTR ERVL 40 172 -456 495 0 0 0 chr11 25975814 25975869 -124807684 + (TA)n Simple_repeat Simple_repeat 1 55 0 1368 179 88 28 chr11 25975887 25976172 -124807381 + AluJo SINE Alu 1 302 -10 1136 102 11 0 chr11 25976913 25977090 -124806463 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 581 192 11 28 chr11 25977091 25977273 -124806280 + GA-rich Low_complexity Low_complexity 2 180 0 394 207 0 18 chr11 25977284 25977395 -124806158 + GA-rich Low_complexity Low_complexity 3 111 0 261 354 31 0 chr11 25978148 25978244 -124805309 + MER81 DNA DNA 16 114 0 1921 104 0 39 chr11 25978420 25978699 -124804854 - AluSx SINE Alu -44 268 1 28 48 0 0 chr11 25978786 25978828 -124804725 + AT_rich Low_complexity Low_complexity 1 42 0 232 271 73 10 chr11 25979247 25979343 -124804210 - L1ME LINE L1 -672 5449 5348 292 299 65 36 chr11 25980533 25980687 -124802866 + MIR SINE MIR 38 194 -67 197 323 152 0 chr11 25980921 25981020 -124802533 - MIR SINE MIR -60 148 35 23 33 0 0 chr11 25981601 25981631 -124801922 + AT_rich Low_complexity Low_complexity 1 30 0 1516 233 13 66 chr11 25981865 25982260 -124801293 + MLT1D LTR MaLR 130 503 -2 225 302 12 24 chr11 25982288 25982457 -124801096 + (TA)n Simple_repeat Simple_repeat 2 168 0 2158 152 17 8 chr11 25982581 25982942 -124800611 + THE1B LTR MaLR 1 364 0 3102 103 5 0 chr11 25982942 25983378 -124800175 + THE1B-int LTR MaLR 1 438 -1142 2085 164 27 15 chr11 25983371 25984196 -124799357 + L1PB4 LINE L1 4802 6147 -9 * 2085 188 40 2 chr11 25984196 25984626 -124798927 + L1PB4 LINE L1 5706 6151 -5 488 320 59 68 chr11 25984767 25985192 -124798361 + L2 LINE L2 2876 3296 -17 198 71 0 0 chr11 25986154 25986182 -124797371 + (TG)n Simple_repeat Simple_repeat 2 29 0 227 354 91 0 chr11 25987431 25987530 -124796023 + L2 LINE L2 3147 3254 -18 2245 173 25 0 chr11 25987673 25988077 -124795476 - L1PBa LINE L1 -5814 1049 636 1071 184 20 0 chr11 25988079 25988275 -124795278 - L1PBa LINE L1 -6663 200 1 266 147 0 40 chr11 25988313 25988388 -124795165 - L1 LINE L1 -2999 3147 3076 687 239 29 13 chr11 25988521 25988760 -124794793 - L1 LINE L1 -3123 3023 2781 626 94 10 0 chr11 25988761 25988857 -124794696 + L1PB2 LINE L1 6055 6151 0 1390 113 31 0 chr11 25988880 25989102 -124794451 - L1PA15-16 LINE L1 -4870 1979 1751 * 1496 168 0 0 chr11 25989100 25989326 -124794227 - L1PA15-16 LINE L1 -6621 228 3 1564 150 91 28 chr11 25989828 25990181 -124793372 + THE1C LTR MaLR 1 375 0 266 391 78 0 chr11 25990436 25990615 -124792938 + L2 LINE L2 2824 3016 -297 964 136 6 6 chr11 25990836 25991013 -124792540 + (TTCCC)n Simple_repeat Simple_repeat 4 180 0 273 297 55 31 chr11 25992192 25992320 -124791233 - MLT1I LTR MaLR -266 143 13 464 284 8 0 chr11 25992686 25992820 -124790733 + MLT1J LTR MaLR 78 212 -299 498 165 12 0 chr11 25993046 25993131 -124790422 + AluS SINE Alu 1 86 -226 185 196 18 0 chr11 25993949 25994005 -124789548 + (CATATA)n Simple_repeat Simple_repeat 6 62 0 185 353 191 7 chr11 25994011 25994147 -124789406 - MIR SINE MIR -68 194 34 429 350 39 10 chr11 25994408 25994614 -124788939 - MIR SINE MIR 0 262 51 221 261 65 33 chr11 25994598 25994690 -124788863 + MIR SINE MIR 93 187 -75 * 255 222 25 12 chr11 25995186 25995267 -124788286 + (TA)n Simple_repeat Simple_repeat 1 82 0 188 379 0 23 chr11 25995381 25995468 -124788085 + MIR SINE MIR 8 92 -170 32 101 0 0 chr11 25995614 25995723 -124787830 + AT_rich Low_complexity Low_complexity 1 109 0 23 54 0 0 chr11 25995972 25996009 -124787544 + AT_rich Low_complexity Low_complexity 1 37 0 636 338 39 25 chr11 25996340 25996695 -124786858 + L2 LINE L2 2447 2806 -508 181 368 78 17 chr11 25996763 25996994 -124786559 + L2 LINE L2 3032 3276 -37 287 360 54 22 chr11 25997031 25997253 -124786300 - MIR SINE MIR -31 231 3 198 0 0 0 chr11 25999205 25999227 -124784326 + (CA)n Simple_repeat Simple_repeat 2 23 0 * 438 36 0 0 chr11 25999226 25999282 -124784271 + (TC)n Simple_repeat Simple_repeat 2 57 0 196 203 31 94 chr11 25999670 25999734 -124783819 + L3 LINE CR1 1510 1569 -8 2776 170 7 37 chr11 26001247 26001840 -124781713 - L1MA6 LINE L1 0 6300 5726 21 0 0 0 chr11 26001903 26001924 -124781629 + AT_rich Low_complexity Low_complexity 1 21 0 297 89 0 0 chr11 26002108 26002153 -124781400 + (TG)n Simple_repeat Simple_repeat 2 46 0 218 276 0 0 chr11 26003036 26003091 -124780462 + MIR SINE MIR 97 145 -63 21 0 0 0 chr11 26003146 26003167 -124780386 + AT_rich Low_complexity Low_complexity 1 21 0 583 155 10 0 chr11 26003539 26003636 -124779917 - AluJ/FLAM SINE Alu -214 98 1 202 327 45 64 chr11 26003872 26004028 -124779525 - L2 LINE L2 -223 3049 2897 3332 137 0 8 chr11 26004826 26005338 -124778215 - MER9 LTR ERVK 0 511 4 462 100 7 93 chr11 26005570 26005710 -124777843 - MER9 LTR ERVK -383 128 1 606 89 0 0 chr11 26006687 26006777 -124776776 + (TC)n Simple_repeat Simple_repeat 1 90 0 388 296 120 9 chr11 26007223 26007456 -124776097 + MER110A LTR ERV1 28 286 -182 2248 249 30 2 chr11 26007456 26007999 -124775554 + MER90 LTR ERV1 10 567 -8 23 33 0 0 chr11 26008304 26008334 -124775219 + AT_rich Low_complexity Low_complexity 1 30 0 2254 81 0 3 chr11 26008408 26008704 -124774849 - AluY SINE Alu -16 295 1 390 333 61 17 chr11 26008719 26008950 -124774603 + L2 LINE L2 2736 2976 -338 23 0 0 0 chr11 26009102 26009125 -124774428 + AT_rich Low_complexity Low_complexity 1 23 0 2045 122 17 0 chr11 26009240 26009528 -124774025 + AluSx SINE Alu 1 293 -19 267 360 9 9 chr11 26010633 26010744 -124772809 + MIR3 SINE MIR 65 175 -33 22 0 0 0 chr11 26010808 26010830 -124772723 + AT_rich Low_complexity Low_complexity 1 22 0 435 270 71 16 chr11 26011068 26011194 -124772359 - L2 LINE L2 -1 3312 3180 280 291 27 54 chr11 26011215 26011363 -124772190 + MLT1I LTR MaLR 28 171 -238 228 132 26 53 chr11 26013066 26013142 -124770411 + T-rich Low_complexity Low_complexity 3 76 0 255 31 0 0 chr11 26013573 26013605 -124769948 + (TTG)n Simple_repeat Simple_repeat 2 33 0 2051 133 0 10 chr11 26015300 26015600 -124767953 - AluSx SINE Alu -15 297 1 214 167 0 0 chr11 26015848 26015890 -124767663 + (CAT)n Simple_repeat Simple_repeat 1 42 0 243 0 0 0 chr11 26015952 26015979 -124767574 + (TA)n Simple_repeat Simple_repeat 2 28 0 5281 60 3 0 chr11 26015981 26016653 -124766900 - L1PA5 LINE L1 -6 6148 5475 42739 51 3 2 chr11 26016661 26022813 -124760740 - L1PA3 LINE L1 0 6155 1 1754 75 16 0 chr11 26022780 26023115 -124760438 - L1P2 LINE L1 -628 5526 5187 * 6278 73 22 0 chr11 26023115 26023979 -124759574 + L1P LINE L1 3158 4040 -2106 1597 199 17 3 chr11 26024235 26024532 -124759021 + AluJo SINE Alu 1 301 -11 12171 174 24 9 chr11 26024572 26026800 -124756753 - Tigger1 DNA MER2_type -3 2415 156 5791 217 40 25 chr11 26026940 26029408 -124754145 - L1 LINE L1 -3829 2499 1 22 35 0 0 chr11 26029870 26029899 -124753654 + AT_rich Low_complexity Low_complexity 1 29 0 213 243 186 0 chr11 26030279 26030349 -124753204 - MIR SINE MIR -67 195 113 683 312 34 15 chr11 26031704 26031973 -124751580 - LTR16B LTR ERVL 0 464 191 642 232 0 76 chr11 26032017 26032215 -124751338 + MLT1E2 LTR MaLR 1 183 -443 482 269 70 45 chr11 26032494 26032780 -124750773 + LTR52 LTR ERVL 1 293 -128 615 241 179 12 chr11 26033215 26033556 -124749997 - MER69 DNA AcHobo -113 2413 2016 661 321 154 31 chr11 26033564 26033924 -124749629 - MER69 DNA AcHobo -1961 565 130 1149 249 48 28 chr11 26033924 26034282 -124749271 + MLT1A1 LTR MaLR 1 365 0 661 321 154 31 chr11 26034282 26034401 -124749152 - MER69 DNA AcHobo -2396 130 27 1738 265 73 47 chr11 26034944 26036166 -124747387 - L1ME2 LINE L1 -106 6058 4668 * 9978 225 34 48 chr11 26036155 26036819 -124746734 + L1M2 LINE L1 85 757 -6091 1916 173 106 3 chr11 26036819 26037207 -124746346 + MSTA LTR MaLR 1 428 0 9978 225 34 48 chr11 26037207 26037367 -124746186 + L1M2 LINE L1 757 918 -5930 2279 91 0 10 chr11 26037367 26037674 -124745879 - AluSc SINE Alu -5 304 1 9978 225 34 48 chr11 26037674 26037701 -124745852 + L1M2 LINE L1 918 944 -5904 339 203 0 0 chr11 26037701 26037765 -124745788 + MSTA LTR MaLR 365 428 0 9978 225 34 48 chr11 26037765 26041320 -124742233 + L1M2 LINE L1 944 4449 -2399 7728 111 18 1 chr11 26041317 26042514 -124741039 - L1P LINE L1 -1918 4228 3011 * 6599 65 17 6 chr11 26042514 26044118 -124739435 + L1PA7 LINE L1 4539 6154 0 3264 160 34 184 chr11 26044126 26045099 -124738454 + L1M2 LINE L1 4477 5208 -1640 1322 229 10 17 chr11 26045099 26045396 -124738157 + AluJo SINE Alu 5 299 -13 3264 160 34 184 chr11 26045396 26045719 -124737834 + L1M2 LINE L1 5208 5578 -1270 1122 174 103 20 chr11 26045726 26045979 -124737574 + MSTA LTR MaLR 3 276 -152 * 2687 143 10 0 chr11 26045976 26046382 -124737171 + MSTA LTR MaLR 17 426 -2 1132 186 20 112 chr11 26046383 26046830 -124736723 + L1M2 LINE L1 5695 6100 -748 * 1754 187 42 21 chr11 26046827 26047346 -124736207 + L1MA4A LINE L1 5136 5664 -639 589 156 19 25 chr11 26047346 26047506 -124736047 + GA-rich Low_complexity Low_complexity 4 162 0 2857 178 23 22 chr11 26047516 26048161 -124735392 + L1MA4A LINE L1 5653 6298 -5 281 324 36 9 chr11 26048161 26048272 -124735281 - L2 LINE L2 -21 3292 3179 23 0 0 0 chr11 26048345 26048368 -124735185 + AT_rich Low_complexity Low_complexity 1 23 0 748 291 120 10 chr11 26048370 26048888 -124734665 - L1MEc LINE L1 -1455 5085 4511 1848 291 89 16 chr11 26048925 26050212 -124733341 - L1MEc LINE L1 -2105 4435 3054 539 306 49 24 chr11 26050252 26050703 -124732850 - L1MEc LINE L1 -3547 2993 2532 1405 213 35 23 chr11 26050705 26050942 -124732611 + MLT2C1 LTR ERVL 1 245 -152 2012 102 0 0 chr11 26050942 26051208 -124732345 + AluSg SINE Alu 39 304 -6 1405 213 35 23 chr11 26051208 26051313 -124732240 + MLT2C1 LTR ERVL 245 347 -50 418 298 120 58 chr11 26051409 26051859 -124731694 - L1MEc LINE L1 -4148 2573 2096 668 239 118 51 chr11 26051880 26052252 -124731301 - L1MEc LINE L1 -4695 1845 1449 1887 137 16 13 chr11 26052830 26053137 -124730416 - AluSq SINE Alu -5 308 1 23 33 0 0 chr11 26053142 26053172 -124730381 + AT_rich Low_complexity Low_complexity 1 30 0 589 253 141 12 chr11 26053182 26053431 -124730122 - LTR16A1 LTR ERVL -7 450 170 306 296 167 0 chr11 26054714 26054822 -124728731 + MIR SINE MIR 126 251 -11 606 385 31 8 chr11 26055425 26055809 -124727744 + MLT1K LTR MaLR 196 588 0 231 313 30 0 chr11 26055902 26055969 -124727584 - L2 LINE L2 -19 3294 3226 56 39 0 0 chr11 26056193 26056270 -124727283 + AT_rich Low_complexity Low_complexity 1 77 0 3952 159 25 6 chr11 26056407 26057137 -124726416 - L1MA4A LINE L1 -5 6298 5555 1022 193 7 93 chr11 26057146 26057415 -124726138 - L1M2 LINE L1 -6602 247 2 195 346 30 20 chr11 26057644 26057745 -124725808 - L2 LINE L2 -991 2323 2222 273 237 26 13 chr11 26057984 26058060 -124725493 - MIR SINE MIR -102 160 84 281 314 0 0 chr11 26058213 26058299 -124725254 - MER103 DNA DNA -77 89 4 1014 133 14 2 chr11 26058691 26058986 -124724567 + THE1C LTR MaLR 1 368 -7 9257 121 40 42 chr11 26058990 26060572 -124722981 + THE1C-int LTR MaLR 2 1580 0 2304 119 24 16 chr11 26060574 26060944 -124722609 + THE1C LTR MaLR 3 375 0 240 235 15 0 chr11 26061054 26061122 -124722431 + (TA)n Simple_repeat Simple_repeat 2 70 0 452 337 51 0 chr11 26061324 26061502 -124722051 - MIR SINE MIR -67 195 9 794 217 19 0 chr11 26061877 26062034 -124721519 + FAM SINE Alu 7 166 -19 30 0 0 0 chr11 26062586 26062616 -124720937 + AT_rich Low_complexity Low_complexity 1 30 0 1327 178 99 76 chr11 26062956 26063485 -124720068 + MER21B LTR ERV1 1 566 -297 1196 171 55 137 chr11 26063485 26063975 -124719578 - LTR7 LTR ERV1 0 450 1 3470 121 14 13 chr11 26063977 26064531 -124719022 - HERVH LTR ERV1 -2 7711 7157 * 13133 136 9 7 chr11 26064524 26067179 -124716374 - HERVH LTR ERV1 -1697 6016 3421 223 329 0 13 chr11 26067193 26067272 -124716281 - L2 LINE L2 -68 3245 3168 25 0 0 0 chr11 26067330 26067355 -124716198 + AT_rich Low_complexity Low_complexity 1 25 0 206 345 104 18 chr11 26067740 26067960 -124715593 + L2 LINE L2 2946 3184 -129 324 280 24 54 chr11 26068094 26068262 -124715291 + L2 LINE L2 3149 3311 -2 459 307 0 40 chr11 26068396 26068546 -124715007 + MIR SINE MIR 37 180 -82 1858 219 63 11 chr11 26069406 26069581 -124713972 + MLT1C LTR MaLR 1 165 -302 333 0 0 0 chr11 26069581 26069618 -124713935 + (CA)n Simple_repeat Simple_repeat 2 38 0 1858 219 63 11 chr11 26069618 26069884 -124713669 + MLT1C LTR MaLR 165 465 -2 186 43 0 0 chr11 26070173 26070196 -124713357 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 442 197 54 88 chr11 26070242 26070389 -124713164 + LTR56 LTR ERV1 1 142 -303 1837 154 18 0 chr11 26070461 26070746 -124712807 - AluSx SINE Alu -22 290 1 1127 190 86 55 chr11 26070760 26071086 -124712467 - MER4D LTR ERV1 0 903 568 22 35 0 0 chr11 26072075 26072104 -124711449 + AT_rich Low_complexity Low_complexity 1 29 0 1624 246 139 38 chr11 26072108 26072922 -124710631 - L1ME2 LINE L1 -12 6152 5257 235 297 0 0 chr11 26072950 26073014 -124710539 + (CATATA)n Simple_repeat Simple_repeat 6 69 0 1203 271 42 49 chr11 26073080 26073775 -124709778 - L1ME2 LINE L1 -1261 4885 4196 4504 181 31 23 chr11 26074176 26075117 -124708436 + L1MC1 LINE L1 5373 6320 -13 210 37 0 0 chr11 26075122 26075149 -124708404 + (TAA)n Simple_repeat Simple_repeat 2 28 0 268 254 51 136 chr11 26075692 26075869 -124707684 + MIR SINE MIR 17 178 -84 24 0 0 0 chr11 26076633 26076657 -124706896 + AT_rich Low_complexity Low_complexity 1 24 0 1820 32 0 0 chr11 26076657 26076878 -124706675 - L1PA5 LINE L1 -8 6146 5926 1605 22 0 0 chr11 26076878 26077063 -124706490 + L1PA5 LINE L1 5738 5922 -233 1760 169 26 0 chr11 26077063 26077335 -124706218 - AluJo SINE Alu -33 279 1 381 279 66 73 chr11 26077682 26077771 -124705782 + L2 LINE L2 3175 3264 -49 1846 141 7 42 chr11 26077771 26078077 -124705476 + AluSx SINE Alu 1 295 -17 381 279 66 73 chr11 26078077 26078123 -124705430 + L2 LINE L2 3264 3309 -4 223 297 29 94 chr11 26078920 26079058 -124704495 + L2 LINE L2 3140 3268 -4 200 224 0 35 chr11 26079317 26079375 -124704178 + CT-rich Low_complexity Low_complexity 1 56 0 2041 124 3 7 chr11 26079463 26079769 -124703784 + AluSg SINE Alu 1 305 -5 514 254 8 0 chr11 26080508 26080638 -124702915 - MER103 DNA DNA -2 164 34 1133 329 49 40 chr11 26080963 26081596 -124701957 + L2 LINE L2 2395 3030 -283 31 44 0 0 chr11 26081673 26081718 -124701835 + AT_rich Low_complexity Low_complexity 1 45 0 22 94 0 0 chr11 26081867 26081931 -124701622 + AT_rich Low_complexity Low_complexity 1 64 0 24 0 0 0 chr11 26082019 26082043 -124701510 + AT_rich Low_complexity Low_complexity 1 24 0 29 0 0 0 chr11 26082191 26082220 -124701333 + AT_rich Low_complexity Low_complexity 1 29 0 5171 162 18 20 chr11 26082333 26083509 -124700044 - L1PA15 LINE L1 -1 6164 5002 16738 39 0 0 chr11 26083609 26086426 -124697127 + L1PA3 LINE L1 3335 6151 -4 199 303 0 53 chr11 26086630 26086706 -124696847 - MIR3 SINE MIR -27 181 110 508 14 0 28 chr11 26086893 26086964 -124696589 + (TTATA)n Simple_repeat Simple_repeat 2 70 0 676 290 29 14 chr11 26088086 26088293 -124695260 + MIR SINE MIR 12 221 -41 213 154 0 0 chr11 26088391 26088430 -124695123 + (CA)n Simple_repeat Simple_repeat 1 39 0 366 156 42 0 chr11 26088431 26088527 -124695026 + GA-rich Low_complexity Low_complexity 1 100 0 1966 167 13 93 chr11 26089317 26089380 -124694173 - L1P LINE L1 -1082 6502 6436 2106 128 0 10 chr11 26089380 26089693 -124693860 - AluSg SINE Alu 0 310 1 1966 167 13 93 chr11 26089693 26090155 -124693398 - L1P LINE L1 -1148 6436 6019 8353 263 39 27 chr11 26090162 26094514 -124689039 - L1PA12 LINE L1 -3167 4417 9 261 146 0 0 chr11 26094575 26094623 -124688930 + (TA)n Simple_repeat Simple_repeat 1 48 0 3591 162 49 10 chr11 26094660 26095377 -124688176 - Tigger3(Golem) DNA MER2_type 0 3029 2285 547 204 0 0 chr11 26095380 26095473 -124688080 - Tigger3(Golem) DNA MER2_type -2922 107 15 21 57 0 0 chr11 26095688 26095723 -124687830 + AT_rich Low_complexity Low_complexity 1 35 0 412 310 91 9 chr11 26096359 26096591 -124686962 - LTR33A LTR ERVL -11 512 262 253 271 17 17 chr11 26096798 26096857 -124686696 - L2 LINE L2 0 3272 3214 1061 326 58 30 chr11 26097490 26098026 -124685527 + MLT1H1 LTR MaLR 3 553 -2 1218 167 129 8 chr11 26098458 26098698 -124684855 + AluJo SINE Alu 13 281 -31 252 59 0 0 chr11 26099318 26099352 -124684201 + (TATG)n Simple_repeat Simple_repeat 2 35 0 22 0 0 0 chr11 26100149 26100171 -124683382 + AT_rich Low_complexity Low_complexity 1 22 0 310 292 172 21 chr11 26100788 26100980 -124682573 - MLT1H1 LTR MaLR -2 553 333 250 227 15 0 chr11 26101097 26101163 -124682390 + L1MC4 LINE L1 6634 6700 -1342 1284 117 86 5 chr11 26101163 26101385 -124682168 - L1PA13 LINE L1 -8 6155 5916 718 130 52 9 chr11 26101389 26101504 -124682049 + L1PA12 LINE L1 11 130 -7451 21 0 0 0 chr11 26101587 26101608 -124681945 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr11 26103154 26103182 -124680371 + AT_rich Low_complexity Low_complexity 1 28 0 196 268 0 18 chr11 26104355 26104411 -124679142 - MIR SINE MIR -77 185 131 * 202 330 52 31 chr11 26104409 26104506 -124679047 + MIR SINE MIR 6 104 -158 28 48 0 0 chr11 26104653 26104695 -124678858 + AT_rich Low_complexity Low_complexity 1 42 0 189 213 133 27 chr11 26104922 26104997 -124678556 - MIR SINE MIR -57 205 123 2039 192 49 5 chr11 26105297 26105704 -124677849 - MSTA LTR MaLR -3 425 1 703 136 91 0 chr11 26105756 26105866 -124677687 + FLAM_C SINE Alu 3 122 -21 282 97 16 32 chr11 26105878 26105940 -124677613 + (GGAA)n Simple_repeat Simple_repeat 4 64 0 830 161 24 81 chr11 26106547 26106816 -124676737 - L1M2 LINE L1 -744 5402 5206 1959 168 25 25 chr11 26106816 26107180 -124676373 - THE1B LTR MaLR 0 364 1 10674 112 3 33 chr11 26107180 26107830 -124675723 - THE1B-int LTR MaLR 0 1580 912 6954 52 9 6 chr11 26107830 26109322 -124674231 + L1PA5 LINE L1 4657 6151 -3 10674 112 3 33 chr11 26109322 26110300 -124673253 - THE1B-int LTR MaLR -668 912 1 1953 164 22 25 chr11 26110300 26110665 -124672888 - THE1B LTR MaLR 0 364 1 1719 212 46 23 chr11 26110666 26111104 -124672449 - L1M2 LINE L1 -937 5209 4762 1071 190 58 0 chr11 26111114 26111319 -124672234 + L1M3 LINE L1 5492 5708 -460 1631 180 7 14 chr11 26111860 26112149 -124671404 - AluJo SINE Alu -25 287 1 295 377 73 5 chr11 26112668 26112888 -124670665 + MIR SINE MIR 22 256 -6 1789 174 44 0 chr11 26112980 26113343 -124670210 - L1MA4A LINE L1 -14 6289 5911 1306 164 19 120 chr11 26113343 26113504 -124670049 + L1MA5 LINE L1 5623 5736 -564 1212 208 4 0 chr11 26113504 26113745 -124669808 + L1PA16 LINE L1 5906 6147 -19 1306 164 19 120 chr11 26113745 26113907 -124669646 + L1MA5 LINE L1 5736 5913 -387 980 211 4 32 chr11 26114261 26114503 -124669050 + Tigger7 DNA MER2_type 1 298 -252 * 1949 171 46 0 chr11 26114499 26114850 -124668703 + Tigger7 DNA MER2_type 2121 2487 0 301 377 105 40 chr11 26115267 26115543 -124668010 + L2 LINE L2 2979 3272 0 540 344 39 16 chr11 26115726 26115982 -124667571 + MIR SINE MIR 1 262 0 224 331 50 50 chr11 26116025 26116164 -124667389 - MIR SINE MIR -99 163 25 564 258 7 13 chr11 26118009 26118164 -124665389 + MER97b DNA MER1_type? 25 178 -875 428 377 13 18 chr11 26118341 26118569 -124664984 - MIR SINE MIR -32 230 4 195 310 22 88 chr11 26118609 26118835 -124664718 + L2 LINE L2 1447 1657 -1657 428 268 1 4 chr11 26119623 26119752 -124663801 + L1MC/D LINE L1 5705 5829 -346 696 299 54 45 chr11 26119802 26120137 -124663416 + MLT1I LTR MaLR 70 407 -2 747 324 55 26 chr11 26120198 26120581 -124662972 - HERV16 LTR ERVL -4106 890 497 439 272 27 14 chr11 26120850 26120997 -124662556 + L1MB8 LINE L1 6021 6169 -9 2327 150 16 5 chr11 26121170 26121597 -124661956 - L1MA6 LINE L1 0 6300 5869 255 164 91 0 chr11 26123090 26123145 -124660408 - L1PA16 LINE L1 0 6166 6107 4352 267 34 25 chr11 26123153 26123725 -124659828 - L1PA13 LINE L1 -3852 2945 2379 4832 37 3 7 chr11 26123725 26124320 -124659233 - L1PA4 LINE L1 -2 6153 5561 4352 267 34 25 chr11 26124320 26126121 -124657432 - L1PA13 LINE L1 -4418 2379 44 393 315 96 23 chr11 26126550 26126769 -124656784 - MIR SINE MIR -25 237 3 25 31 0 0 chr11 26127176 26127208 -124656345 + AT_rich Low_complexity Low_complexity 1 32 0 195 42 0 0 chr11 26127527 26127551 -124656002 + (CAAAA)n Simple_repeat Simple_repeat 4 27 0 242 208 0 52 chr11 26128118 26128214 -124655339 - L1MC4 LINE L1 -1339 6703 6613 1116 145 0 0 chr11 26128238 26128404 -124655149 + AluSq SINE Alu 131 296 -17 22 0 0 0 chr11 26128965 26128987 -124654566 + AT_rich Low_complexity Low_complexity 1 22 0 1302 209 46 20 chr11 26129381 26129683 -124653870 + AluJo SINE Alu 1 310 -2 265 406 42 9 chr11 26130088 26130300 -124653253 + MIR SINE MIR 6 224 -38 1110 253 34 57 chr11 26130492 26130844 -124652709 - MLT1H LTR MaLR -200 349 6 287 235 209 9 chr11 26131290 26131405 -124652148 + L2 LINE L2 3134 3271 -1 231 36 0 0 chr11 26131452 26131480 -124652073 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 185 0 40 0 chr11 26132508 26132533 -124651020 + (TAAAAA)n Simple_repeat Simple_repeat 6 31 0 262 296 64 32 chr11 26134150 26134275 -124649278 + L2 LINE L2 3185 3313 0 21 57 0 0 chr11 26135085 26135120 -124648433 + AT_rich Low_complexity Low_complexity 1 35 0 1374 225 32 11 chr11 26136031 26136400 -124647153 - L1MC3 LINE L1 -16 7769 7393 213 279 0 16 chr11 26136873 26136934 -124646619 - L2 LINE L2 -2632 682 623 1631 180 18 0 chr11 26137918 26138196 -124645357 + AluJo SINE Alu 11 293 -19 183 42 0 0 chr11 26138330 26138354 -124645199 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 330 357 48 40 chr11 26138369 26138596 -124644957 - MLT1L LTR MaLR -185 430 202 430 306 11 61 chr11 26139745 26139844 -124643709 + MER45B DNA AcHobo 2 90 -1491 2030 103 21 3 chr11 26139844 26140134 -124643419 - AluSg SINE Alu -15 295 1 430 306 11 61 chr11 26140134 26140214 -124643339 + MER45B DNA AcHobo 90 172 -1409 2109 217 67 21 chr11 26140223 26140790 -124642763 + MER45B DNA AcHobo 448 1040 0 400 354 49 13 chr11 26140815 26141225 -124642328 + ERVL LTR ERVL 4866 5287 -367 435 284 75 98 chr11 26141446 26141875 -124641678 + LTR16B LTR ERVL 44 462 -2 5119 33 0 0 chr11 26141894 26142496 -124641057 + L1PA3 LINE L1 5551 6152 -3 26 0 0 0 chr11 26142496 26142522 -124641031 + AT_rich Low_complexity Low_complexity 1 26 0 366 311 79 17 chr11 26142550 26142727 -124640826 - MIR SINE MIR -28 234 47 2151 120 0 22 chr11 26142812 26143129 -124640424 + AluSx SINE Alu 2 311 -1 301 123 0 62 chr11 26144568 26144633 -124638920 + L1PA6 LINE L1 6094 6154 0 180 350 17 60 chr11 26144666 26144783 -124638770 - MIR SINE MIR -86 176 65 277 623 0 6 chr11 26145079 26145254 -124638299 + polypyrimidine Low_complexity Low_complexity 2 175 0 267 31 0 0 chr11 26145254 26145286 -124638267 + (CA)n Simple_repeat Simple_repeat 1 32 0 32 0 0 0 chr11 26146316 26146348 -124637205 + AT_rich Low_complexity Low_complexity 1 32 0 232 183 0 17 chr11 26146350 26146410 -124637143 + LTR66 LTR ERVL 399 457 -153 * 286 333 20 0 chr11 26146379 26146481 -124637072 - MER117 DNA MER1_type -12 185 82 28 48 0 0 chr11 26147246 26147288 -124636265 + AT_rich Low_complexity Low_complexity 1 42 0 236 135 0 58 chr11 26147459 26147511 -124636042 - L1MA4A LINE L1 -30 6273 6225 309 315 110 30 chr11 26148268 26148468 -124635085 - L3 LINE CR1 -10 1567 1352 233 309 0 21 chr11 26148538 26148635 -124634918 + CT-rich Low_complexity Low_complexity 1 95 0 23 33 0 0 chr11 26150409 26150439 -124633114 + AT_rich Low_complexity Low_complexity 1 30 0 238 349 76 36 chr11 26151118 26151422 -124632131 + L2 LINE L2 2528 2843 -471 200 298 35 18 chr11 26152206 26152263 -124631290 - MER5B DNA MER1_type 0 178 121 27 49 0 0 chr11 26152426 26152467 -124631086 + AT_rich Low_complexity Low_complexity 1 41 0 25 0 0 0 chr11 26153608 26153633 -124629920 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr11 26153842 26153863 -124629690 + AT_rich Low_complexity Low_complexity 1 21 0 570 288 13 9 chr11 26153875 26154208 -124629345 - L1ME2 LINE L1 -26 6138 5761 23 33 0 0 chr11 26154221 26154251 -124629302 + AT_rich Low_complexity Low_complexity 1 30 0 419 219 66 17 chr11 26154518 26154671 -124628882 + L1MA7 LINE L1 6126 6289 -2 261 130 0 0 chr11 26155030 26155076 -124628477 + L1MB2 LINE L1 6119 6164 -7 763 58 0 0 chr11 26155109 26155212 -124628341 - L1PA8 LINE L1 0 6172 6070 205 328 30 45 chr11 26155519 26155653 -124627900 + MIR SINE MIR 57 188 -74 25 0 0 0 chr11 26155924 26155949 -124627604 + AT_rich Low_complexity Low_complexity 1 25 0 344 313 0 0 chr11 26156195 26156291 -124627262 - L1MC4 LINE L1 -1333 6709 6614 281 163 0 0 chr11 26156293 26156342 -124627211 - AluJ/FLAM SINE Alu -211 91 43 38 0 0 0 chr11 26156546 26156584 -124626969 + AT_rich Low_complexity Low_complexity 1 38 0 535 249 13 94 chr11 26156703 26156936 -124626617 - L2 LINE L2 -5 3308 3095 2024 78 7 4 chr11 26156940 26157211 -124626342 + AluY SINE Alu 1 272 -39 2417 83 3 3 chr11 26157322 26157661 -124625892 + L1PA7 LINE L1 5816 6154 0 269 284 129 39 chr11 26157720 26157875 -124625678 + MIR SINE MIR 78 246 -16 2085 128 73 14 chr11 26159220 26159564 -124623989 + THE1B LTR MaLR 1 364 0 58 70 0 0 chr11 26159587 26159701 -124623852 + AT_rich Low_complexity Low_complexity 1 114 0 2299 96 7 0 chr11 26160145 26160448 -124623105 - AluSp SINE Alu -8 305 1 223 140 40 0 chr11 26161115 26161165 -124622388 + (TA)n Simple_repeat Simple_repeat 1 52 0 398 269 0 0 chr11 26161177 26161285 -124622268 - L1ME LINE L1 -356 5810 5703 2054 128 20 0 chr11 26161287 26161584 -124621969 + AluSq SINE Alu 1 303 -10 767 200 0 11 chr11 26161597 26161777 -124621776 + GA-rich Low_complexity Low_complexity 1 178 0 1577 255 73 26 chr11 26161779 26162654 -124620899 - L1ME LINE L1 -663 5579 4795 818 250 15 0 chr11 26163681 26163877 -124619676 - L1ME1 LINE L1 -140 6026 5828 225 94 0 0 chr11 26164049 26164081 -124619472 + (TA)n Simple_repeat Simple_repeat 1 32 0 235 95 0 0 chr11 26164084 26164126 -124619427 - LTR66 LTR ERVL -171 439 398 * 240 91 0 0 chr11 26164091 26164135 -124619418 + LTR66 LTR ERVL 395 438 -172 1047 252 28 8 chr11 26164170 26164420 -124619133 - MLT2D LTR ERVL -57 357 103 495 218 32 0 chr11 26165080 26165204 -124618349 + MLT2C1 LTR ERVL 1 128 -269 244 200 15 0 chr11 26165220 26165285 -124618268 - L1MA8 LINE L1 -5 6286 6221 238 205 74 131 chr11 26165285 26165407 -124618146 + MLT2C1 LTR ERVL 124 238 -159 1514 190 119 9 chr11 26165422 26165843 -124617710 - L1 LINE L1 -1667 4479 4013 3283 151 57 17 chr11 26165843 26165916 -124617637 + L1MA5A LINE L1 5615 5684 -613 1926 160 22 71 chr11 26165916 26166366 -124617187 - MSTB1 LTR MaLR -2 430 3 3283 151 57 17 chr11 26166366 26166943 -124616610 + L1MA5A LINE L1 5684 6291 -6 282 269 13 26 chr11 26166959 26167037 -124616516 + MLT2C1 LTR ERVL 234 310 -87 24 32 0 0 chr11 26167457 26167488 -124616065 + AT_rich Low_complexity Low_complexity 1 31 0 267 206 27 14 chr11 26167503 26167576 -124615977 + (TA)n Simple_repeat Simple_repeat 2 75 0 24388 45 42 2 chr11 26167662 26170781 -124612772 + L1P LINE L1 1 3244 -2902 326 309 37 0 chr11 26171703 26171784 -124611769 - L2 LINE L2 -15 3257 3174 361 342 123 18 chr11 26172953 26173181 -124610372 - MIR SINE MIR -10 252 1 1967 137 0 13 chr11 26173233 26173533 -124610020 + AluSx SINE Alu 1 296 -16 1591 227 54 33 chr11 26173686 26174078 -124609475 - MER101B LTR ERV1 -170 400 1 1393 280 25 2 chr11 26174094 26174537 -124609016 - L1M4 LINE L1 -996 5150 4698 222 37 0 0 chr11 26174852 26174879 -124608674 + (TTTA)n Simple_repeat Simple_repeat 4 30 0 1847 164 0 0 chr11 26174879 26175159 -124608394 - AluSx SINE Alu -32 280 1 831 134 0 6 chr11 26175215 26175372 -124608181 + AluSx SINE Alu 44 286 -26 201 74 0 0 chr11 26175377 26175404 -124608149 + (TAA)n Simple_repeat Simple_repeat 2 28 0 26 50 0 0 chr11 26175500 26175540 -124608013 + AT_rich Low_complexity Low_complexity 1 40 0 261 261 76 42 chr11 26176501 26176620 -124606933 + L1ME3A LINE L1 6046 6168 -2 22 0 0 0 chr11 26176739 26176761 -124606792 + AT_rich Low_complexity Low_complexity 1 22 0 27 29 0 0 chr11 26176928 26176962 -124606591 + AT_rich Low_complexity Low_complexity 1 34 0 206 244 0 0 chr11 26177551 26177596 -124605957 + (CATATA)n Simple_repeat Simple_repeat 6 50 0 304 346 77 58 chr11 26178202 26178667 -124604886 - L2 LINE L2 -15 3298 2825 2315 146 6 3 chr11 26181481 26181844 -124601709 + THE1B LTR MaLR 1 364 0 381 335 24 30 chr11 26182081 26182245 -124601308 + MER5B DNA MER1_type 7 169 -9 23 68 0 0 chr11 26182775 26182819 -124600734 + AT_rich Low_complexity Low_complexity 1 44 0 229 301 0 0 chr11 26183257 26183330 -124600223 - L2 LINE L2 -247 3066 2994 352 317 129 17 chr11 26183334 26183738 -124599815 - L2 LINE L2 -1000 2314 1866 22 35 0 0 chr11 26183952 26183981 -124599572 + AT_rich Low_complexity Low_complexity 1 29 0 730 192 7 0 chr11 26183983 26184134 -124599419 - L1MB3 LINE L1 -17 6166 6015 228 333 14 0 chr11 26184233 26184305 -124599248 - MIR SINE MIR -133 129 57 198 0 0 0 chr11 26184422 26184444 -124599109 + (A)n Simple_repeat Simple_repeat 1 22 0 1734 162 0 3 chr11 26184453 26184766 -124598787 + AluSx SINE Alu 1 312 0 1798 176 60 8 chr11 26185035 26185399 -124598154 - MLT1B LTR MaLR 0 390 8 663 158 20 41 chr11 26186221 26186367 -124597186 + AluSg/x SINE Alu 168 310 0 648 304 15 34 chr11 26187511 26187715 -124595838 - MIR SINE MIR -38 224 25 2115 87 16 23 chr11 26188974 26189283 -124594270 - AluSq SINE Alu -6 307 1 6418 175 16 25 chr11 26189600 26189713 -124593840 + Tigger1 DNA MER2_type 1172 1284 -1134 2481 49 0 3 chr11 26189713 26190017 -124593536 - AluY SINE Alu -8 303 1 6418 175 16 25 chr11 26190017 26191087 -124592466 + Tigger1 DNA MER2_type 1284 2346 -72 1642 155 43 43 chr11 26191087 26191461 -124592092 + THE1C LTR MaLR 1 374 -1 6418 175 16 25 chr11 26191461 26191516 -124592037 + Tigger1 DNA MER2_type 2346 2400 -18 296 350 111 9 chr11 26193133 26193350 -124590203 - MIR SINE MIR -18 244 6 1120 246 48 51 chr11 26194892 26195245 -124588308 - MLT1A1 LTR MaLR -3 362 11 375 23 0 0 chr11 26195251 26195295 -124588258 + (GA)n Simple_repeat Simple_repeat 1 44 0 1335 133 18 22 chr11 26195303 26195528 -124588025 - AluSg/x SINE Alu -11 299 76 23 0 0 0 chr11 26195533 26195556 -124587997 + AT_rich Low_complexity Low_complexity 1 23 0 220 337 48 42 chr11 26196098 26196264 -124587289 + MIR SINE MIR 95 261 -1 388 193 37 12 chr11 26196321 26196482 -124587071 + (TA)n Simple_repeat Simple_repeat 2 166 0 1381 209 23 0 chr11 26196488 26196747 -124586806 + AluJb SINE Alu 4 268 -44 22 0 0 0 chr11 26197398 26197420 -124586133 + AT_rich Low_complexity Low_complexity 1 22 0 181 312 55 37 chr11 26197846 26197955 -124585598 + L2 LINE L2 3192 3302 -11 2972 55 3 0 chr11 26198320 26198704 -124584849 - L1PA4 LINE L1 -1 6154 5770 4794 41 9 0 chr11 26198881 26199876 -124583677 - L1PA4 LINE L1 -366 5789 4790 2193 84 7 16 chr11 26199877 26200186 -124583367 + AluY SINE Alu 1 306 -5 3651 167 35 7 chr11 26200734 26201471 -124582082 + L1MA4 LINE L1 5542 6299 -1 480 248 81 78 chr11 26201495 26201817 -124581736 + L1M4b LINE L1 1213 1535 -5324 986 247 78 84 chr11 26201913 26202861 -124580692 - L1M4 LINE L1 -2570 3576 2635 1867 245 20 83 chr11 26202873 26203794 -124579759 + L1M4b LINE L1 2787 3764 -3193 1458 188 38 41 chr11 26203794 26204086 -124579467 + AluJo SINE Alu 1 291 -21 1867 245 20 83 chr11 26204086 26204101 -124579452 + L1M4b LINE L1 3764 3778 -3179 344 77 19 0 chr11 26204101 26204153 -124579400 + (TA)n Simple_repeat Simple_repeat 2 54 0 1867 245 20 83 chr11 26204153 26204357 -124579196 + L1M4b LINE L1 3778 3846 -3111 1943 139 3 7 chr11 26204360 26204661 -124578892 + AluSg SINE Alu 1 300 -10 960 214 50 56 chr11 26204669 26204972 -124578581 + L1M4b LINE L1 4583 4883 -2074 1116 269 69 7 chr11 26204973 26205378 -124578175 - L1MD2 LINE L1 -271 6348 5919 1771 223 46 3 chr11 26205385 26205694 -124577859 - LTR2 LTR ERV1 0 449 118 387 0 0 0 chr11 26205694 26205737 -124577816 + (TTA)n Simple_repeat Simple_repeat 2 44 0 1771 223 46 3 chr11 26205737 26205818 -124577735 - LTR2 LTR ERV1 -331 118 42 2179 167 8 5 chr11 26205895 26206416 -124577137 - HERVE LTR ERV1 -2 7811 7211 2420 254 68 37 chr11 26206422 26207387 -124576166 - L1MD2 LINE L1 -710 5909 4881 1297 252 0 13 chr11 26207387 26207700 -124575853 - AluJo SINE Alu -3 309 1 2420 254 68 37 chr11 26207700 26208244 -124575309 - L1MD2 LINE L1 -1738 4881 4355 389 308 0 8 chr11 26209043 26209176 -124574377 - L1MD2 LINE L1 -2051 4355 4224 219 143 26 65 chr11 26209187 26209264 -124574289 + (CATATA)n Simple_repeat Simple_repeat 5 78 0 1301 281 67 5 chr11 26209345 26209794 -124573759 - L1MD2 LINE L1 -5240 1169 693 22 0 0 0 chr11 26211707 26211729 -124571824 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr11 26211862 26211889 -124571664 + AT_rich Low_complexity Low_complexity 1 27 0 753 161 24 8 chr11 26214010 26214134 -124569419 + MSTB LTR MaLR 301 426 0 351 306 68 52 chr11 26216672 26216924 -124566629 + MIR SINE MIR 4 259 -3 645 288 58 96 chr11 26218068 26218807 -124564746 + L2 LINE L2 2606 3307 -6 189 211 0 167 chr11 26218873 26218963 -124564590 + MIR SINE MIR 30 104 -158 1350 207 57 4 chr11 26219728 26220008 -124563545 + MER68 LTR ERV1 11 305 -257 384 174 10 10 chr11 26220017 26220115 -124563438 + L1M4b LINE L1 5213 5310 -1647 958 191 83 66 chr11 26220120 26220361 -124563192 + MER68 LTR ERV1 316 560 -2 4017 152 7 7 chr11 26220412 26221386 -124562167 + L1PB1 LINE L1 4909 5883 -268 32 26 0 0 chr11 26221387 26221426 -124562127 + AT_rich Low_complexity Low_complexity 1 39 0 1489 146 18 33 chr11 26221426 26221701 -124561852 + L1PB1 LINE L1 5879 6149 -2 379 336 149 12 chr11 26222075 26222316 -124561237 + L2 LINE L2 2846 3119 -194 210 314 95 45 chr11 26222679 26222883 -124560670 - MIR SINE MIR -14 248 34 24 0 0 0 chr11 26223814 26223838 -124559715 + AT_rich Low_complexity Low_complexity 1 24 0 2596 80 97 7 chr11 26224182 26224593 -124558960 - LTR7 LTR ERV1 -2 448 1 2273 104 62 13 chr11 26224593 26224967 -124558586 - HERVH LTR ERV1 0 7713 7322 1169 144 58 0 chr11 26224965 26225173 -124558380 - HERVH LTR ERV1 -1894 5819 5600 * 8471 116 6 5 chr11 26225174 26227245 -124556308 - HERVH LTR ERV1 -2287 4242 3140 1243 120 0 34 chr11 26227224 26227433 -124556120 - HERVH LTR ERV1 -4718 2995 2794 * 3551 41 0 0 chr11 26227592 26228032 -124555521 - L1P LINE L1 -3775 2371 1932 7706 43 2 2 chr11 26228034 26229759 -124553794 + L1PA2 LINE L1 4428 6153 -2 505 172 21 0 chr11 26230491 26230584 -124552969 - Tigger1 DNA MER2_type -1152 1266 1172 2276 119 0 0 chr11 26230901 26231213 -124552340 + AluSx SINE Alu 1 312 0 213 374 40 0 chr11 26231748 26231847 -124551706 - MIR SINE MIR -131 131 29 1571 175 9 4 chr11 26233082 26233514 -124550039 + LTR45 LTR ERV1 1 525 0 444 349 64 53 chr11 26233566 26234036 -124549517 + MLT1K LTR MaLR 92 566 -22 764 205 26 13 chr11 26234325 26234481 -124549072 + AluJo SINE Alu 121 278 -34 2059 132 0 30 chr11 26235002 26235306 -124548247 + AluSx SINE Alu 2 296 -16 24 32 0 0 chr11 26235856 26235887 -124547666 + AT_rich Low_complexity Low_complexity 1 31 0 632 374 98 3 chr11 26235911 26236259 -124547294 + L2 LINE L2 2579 2959 -355 218 307 57 85 chr11 26236294 26236506 -124547047 + L2 LINE L2 3103 3308 -5 592 291 22 11 chr11 26236800 26236982 -124546571 + LTR41 LTR ERVL 4 187 -586 396 259 76 64 chr11 26237134 26237385 -124546168 + LTR41 LTR ERVL 510 763 -10 1230 145 55 5 chr11 26237435 26237635 -124545918 - THE1B LTR MaLR 0 364 155 2506 39 0 3 chr11 26237635 26237943 -124545610 + AluY SINE Alu 1 307 -4 1363 117 20 0 chr11 26237943 26238139 -124545414 + AluSg/x SINE Alu 78 277 -35 582 179 34 0 chr11 26238292 26238409 -124545144 - L1MA7 LINE L1 -11 6280 6160 612 188 8 8 chr11 26238464 26238597 -124544956 + L1MB1 LINE L1 6036 6168 0 351 289 72 28 chr11 26238677 26238857 -124544696 - L2 LINE L2 -426 2888 2701 22 0 0 0 chr11 26239366 26239388 -124544165 + GC_rich Low_complexity Low_complexity 1 22 0 3295 264 30 4 chr11 26239999 26241016 -124542537 + L1P LINE L1 3077 4120 -2026 1132 66 0 0 chr11 26241317 26241454 -124542099 + (T)n Simple_repeat Simple_repeat 1 137 0 190 367 18 0 chr11 26241900 26242009 -124541544 + MIR SINE MIR 151 261 -1 388 193 37 12 chr11 26242066 26242227 -124541326 + (TA)n Simple_repeat Simple_repeat 2 166 0 1348 212 23 0 chr11 26242233 26242492 -124541061 + AluJb SINE Alu 4 268 -44 24 0 0 0 chr11 26242967 26242991 -124540562 + AT_rich Low_complexity Low_complexity 1 24 0 4664 99 4 3 chr11 26244481 26245167 -124538386 + HERVH LTR ERV1 3304 3990 -3723 1464 218 47 12 chr11 26245153 26245613 -124537940 + HERVH LTR ERV1 3954 5141 -1950 * 1118 244 48 51 chr11 26246083 26246436 -124537117 - MLT1A1 LTR MaLR -3 362 11 447 19 0 0 chr11 26246442 26246494 -124537059 + (GA)n Simple_repeat Simple_repeat 1 52 0 180 0 0 0 chr11 26246502 26246522 -124537031 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 1301 128 0 25 chr11 26246524 26246727 -124536826 - AluSg/x SINE Alu -37 275 78 23 0 0 0 chr11 26246732 26246755 -124536798 + AT_rich Low_complexity Low_complexity 1 23 0 243 0 0 0 chr11 26247357 26247384 -124536169 + (TG)n Simple_repeat Simple_repeat 2 28 0 676 290 29 14 chr11 26247751 26247958 -124535595 + MIR SINE MIR 12 221 -41 195 162 0 0 chr11 26248058 26248095 -124535458 + (CA)n Simple_repeat Simple_repeat 1 37 0 211 203 14 54 chr11 26248098 26248172 -124535381 + GA-rich Low_complexity Low_complexity 1 71 0 1833 211 22 20 chr11 26248519 26248978 -124534575 + L1 LINE L1 4817 5276 -870 1085 203 19 11 chr11 26248992 26249253 -124534300 + L1 LINE L1 5068 5330 -816 272 145 29 14 chr11 26249702 26249771 -124533782 + L1M LINE L1 5261 5330 -970 296 180 33 0 chr11 26249784 26249845 -124533708 - HsTC2 DNA Tc2 -1825 73 11 3913 124 55 11 chr11 26250010 26250476 -124533077 - L1PB2 LINE L1 -4 6147 5642 1410 182 146 9 chr11 26250476 26250806 -124532747 - THE1C LTR MaLR 0 375 1 3913 124 55 11 chr11 26250806 26250994 -124532559 - L1PB2 LINE L1 -509 5642 5464 226 335 35 58 chr11 26252192 26252365 -124531188 - MLT1K LTR MaLR -411 177 9 209 343 14 14 chr11 26252916 26252989 -124530564 + L2 LINE L2 3192 3264 -49 201 302 9 9 chr11 26253064 26253170 -124530383 + (TA)n Simple_repeat Simple_repeat 2 107 0 25 31 0 0 chr11 26253316 26253348 -124530205 + AT_rich Low_complexity Low_complexity 1 32 0 277 372 31 49 chr11 26253813 26254036 -124529517 + MER20B DNA MER1_type 3 221 -562 507 275 111 29 chr11 26254082 26254564 -124528989 + MER20B DNA MER1_type 226 783 0 708 271 5 48 chr11 26256265 26256472 -124527081 + MER58A DNA MER1_type 26 223 -1 21 0 0 0 chr11 26256686 26256707 -124526846 + AT_rich Low_complexity Low_complexity 1 21 0 183 167 104 21 chr11 26256800 26256848 -124526705 - L2 LINE L2 0 3313 3262 250 254 0 0 chr11 26258102 26258169 -124525384 + (TA)n Simple_repeat Simple_repeat 2 68 0 208 143 0 0 chr11 26258183 26258218 -124525335 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 1043 290 27 47 chr11 26258309 26258788 -124524765 + L1M2a LINE L1 3 760 -6408 5056 169 29 4 chr11 26258788 26259687 -124523866 - HSMAR2 DNA Mariner -52 1250 330 186 345 17 26 chr11 26260359 26260475 -124523078 + MIR SINE MIR 92 206 -56 214 295 161 18 chr11 26261142 26261254 -124522299 + MIR SINE MIR 128 255 -7 717 228 8 95 chr11 26262050 26262291 -124521262 - LTR37A LTR ERV1 -189 237 18 369 251 189 6 chr11 26262471 26262661 -124520892 + MIR SINE MIR 40 261 -1 245 280 32 32 chr11 26263022 26263115 -124520438 - MIR SINE MIR 0 262 170 232 337 11 0 chr11 26263222 26263314 -124520239 - L2 LINE L2 -276 2996 2904 186 347 40 81 chr11 26264237 26264410 -124519143 + L2 LINE L2 2918 3083 -189 345 178 0 0 chr11 26265057 26265130 -124518423 + L1M4 LINE L1 3875 3947 -2199 360 132 41 8 chr11 26265137 26265258 -124518295 + (TA)n Simple_repeat Simple_repeat 2 126 0 1711 266 19 51 chr11 26265258 26266161 -124517392 + L1M4 LINE L1 3954 4807 -1339 2012 121 0 22 chr11 26266425 26266739 -124516814 - AluSx SINE Alu -5 307 1 21 0 0 0 chr11 26266831 26266852 -124516701 + AT_rich Low_complexity Low_complexity 1 21 0 385 353 17 0 chr11 26267462 26267635 -124515918 + (TGGA)n Simple_repeat Simple_repeat 3 178 0 23 97 0 0 chr11 26268331 26268403 -124515150 + AT_rich Low_complexity Low_complexity 1 72 0 26 30 0 0 chr11 26268424 26268457 -124515096 + AT_rich Low_complexity Low_complexity 1 33 0 22 56 0 0 chr11 26268472 26268508 -124515045 + AT_rich Low_complexity Low_complexity 1 36 0 1540 219 69 11 chr11 26268541 26269164 -124514389 - L1MC3 LINE L1 -13 7772 7002 462 250 230 7 chr11 26269132 26269284 -124514269 - L1M4 LINE L1 -6188 354 169 * 22 0 0 0 chr11 26269932 26269954 -124513599 + AT_rich Low_complexity Low_complexity 1 22 0 517 308 24 0 chr11 26270024 26270193 -124513360 - MER5B DNA MER1_type 0 178 6 528 16 0 0 chr11 26270927 26270988 -124512565 + (CA)n Simple_repeat Simple_repeat 2 62 0 2929 73 62 2 chr11 26271701 26272124 -124511429 - LTR7 LTR ERV1 -2 448 1 2127 213 0 34 chr11 26272131 26272634 -124510919 - L1PB4 LINE L1 -2421 3725 3240 7675 197 15 11 chr11 26272644 26275059 -124508494 + L1PB4 LINE L1 3712 6145 -11 1271 161 54 9 chr11 26275075 26275299 -124508254 - AluJb SINE Alu -21 291 58 21 57 0 0 chr11 26275361 26275396 -124508157 + AT_rich Low_complexity Low_complexity 1 35 0 243 174 43 0 chr11 26275437 26275483 -124508070 - AluJb SINE Alu -252 48 1 204 313 84 61 chr11 26276275 26276406 -124507147 + MIR SINE MIR 21 154 -108 660 276 68 26 chr11 26276462 26276708 -124506845 + MIR SINE MIR 1 257 -5 203 238 25 12 chr11 26276787 26276867 -124506686 + (TA)n Simple_repeat Simple_repeat 2 82 0 206 160 20 0 chr11 26276872 26276922 -124506631 + (TATATG)n Simple_repeat Simple_repeat 3 53 0 366 80 0 0 chr11 26276979 26277029 -124506524 + (TG)n Simple_repeat Simple_repeat 1 50 0 890 176 29 5 chr11 26277255 26277460 -124506093 - L1MA8 LINE L1 0 6291 6082 242 299 110 8 chr11 26277616 26277743 -124505810 - MIR SINE MIR -12 250 111 180 0 0 0 chr11 26278117 26278137 -124505416 + (TA)n Simple_repeat Simple_repeat 2 21 0 8967 108 19 4 chr11 26278153 26278490 -124505063 - HSMAR1 DNA Mariner 0 1287 957 2020 90 3 0 chr11 26278490 26278778 -124504775 - L1PA8 LINE L1 -3 6169 5881 8967 108 19 4 chr11 26278778 26279708 -124503845 - HSMAR1 DNA Mariner -330 957 1 195 233 0 0 chr11 26279997 26280040 -124503513 - MIR SINE MIR -145 117 75 1048 251 59 57 chr11 26280322 26280676 -124502877 - MSTB1 LTR MaLR 0 432 78 486 202 0 12 chr11 26281195 26281279 -124502274 - MSTB1 LTR MaLR -353 104 22 219 400 96 0 chr11 26281502 26281627 -124501926 - L2 LINE L2 -220 3052 2916 1558 198 3 33 chr11 26281996 26282325 -124501228 - L1MC1 LINE L1 -6 6327 6009 24 0 0 0 chr11 26283066 26283090 -124500463 + AT_rich Low_complexity Low_complexity 1 24 0 5299 84 17 4 chr11 26283090 26283839 -124499714 - L1PB1 LINE L1 -4 6147 5389 1458 129 102 104 chr11 26284260 26284624 -124498929 + THE1B LTR MaLR 2 364 0 487 92 0 0 chr11 26284624 26284689 -124498864 + THE1B-int LTR MaLR 1 65 -1515 1319 161 12 41 chr11 26284689 26284932 -124498621 + THE1B LTR MaLR 56 291 -73 3865 212 27 44 chr11 26285047 26286178 -124497375 + L1MD1 LINE L1 5122 6241 -1 442 229 145 8 chr11 26286209 26286340 -124497213 + MER45 DNA AcHobo 1428 1576 -5 351 78 0 0 chr11 26286562 26286613 -124496940 + (TC)n Simple_repeat Simple_repeat 2 52 0 384 309 25 25 chr11 26286915 26287077 -124496476 + MER5B DNA MER1_type 14 175 -3 2291 119 0 0 chr11 26287815 26288127 -124495426 + AluSx SINE Alu 1 312 0 257 318 159 45 chr11 26288585 26288761 -124494792 - MIR SINE MIR -38 224 29 208 314 41 50 chr11 26289755 26289876 -124493677 - MER5A DNA MER1_type -1 188 69 1654 134 4 12 chr11 26291621 26291874 -124491679 - AluSq SINE Alu -62 251 1 24 0 0 0 chr11 26292557 26292581 -124490972 + AT_rich Low_complexity Low_complexity 1 24 0 237 33 0 0 chr11 26292662 26292692 -124490861 + (GA)n Simple_repeat Simple_repeat 1 30 0 222 355 59 30 chr11 26292889 26293092 -124490461 - MIR SINE MIR -3 259 51 502 306 192 24 chr11 26294033 26294195 -124489358 + L2 LINE L2 2611 2744 -569 1829 133 0 0 chr11 26294195 26294466 -124489087 - AluSx SINE Alu -41 271 1 502 306 192 24 chr11 26294466 26294897 -124488656 + L2 LINE L2 2744 3313 0 284 292 24 101 chr11 26294979 26295147 -124488406 + MIR SINE MIR 52 206 -56 1150 157 15 10 chr11 26295737 26295941 -124487612 - L1PB4 LINE L1 -13 6143 5939 322 264 84 25 chr11 26295941 26296180 -124487373 - L1ME LINE L1 -293 5828 5576 266 354 155 41 chr11 26296311 26296704 -124486849 + L2 LINE L2 2876 3313 0 1619 111 201 7 chr11 26296745 26297034 -124486519 - MSTA LTR MaLR 0 428 84 1079 189 26 31 chr11 26297032 26297259 -124486294 + MLT1D LTR MaLR 280 505 0 * 296 279 81 18 chr11 26297533 26297644 -124485909 - MIR SINE MIR -114 148 31 1378 196 0 58 chr11 26298543 26298870 -124484683 + AluJo SINE Alu 1 308 -4 248 200 0 0 chr11 26300155 26300210 -124483343 + L1MC4 LINE L1 6648 6702 -1340 233 200 0 18 chr11 26300188 26300243 -124483310 - L1MC4 LINE L1 -1340 6702 6649 * 31 0 0 0 chr11 26300255 26300286 -124483267 + AT_rich Low_complexity Low_complexity 1 31 0 30 59 0 0 chr11 26300879 26300930 -124482623 + AT_rich Low_complexity Low_complexity 1 51 0 260 329 49 24 chr11 26301149 26301313 -124482240 + L1MC/D LINE L1 5589 5756 -2052 247 139 0 47 chr11 26301355 26301398 -124482155 + MIR SINE MIR 111 151 -111 220 359 29 19 chr11 26301820 26301923 -124481630 - MIR SINE MIR -147 115 12 511 343 130 36 chr11 26301934 26302565 -124480988 - L2 LINE L2 -124 3189 2485 3185 212 26 69 chr11 26303586 26304599 -124478954 + LTR5 LTR ERVK 1 969 0 268 216 118 10 chr11 26304608 26304710 -124478843 + LTR48B LTR ERV1 457 569 -75 2823 6 0 0 chr11 26305812 26306123 -124477430 + AluYa5 SINE Alu 1 311 0 544 130 20 10 chr11 26306987 26307087 -124476466 + L1PA10 LINE L1 6067 6167 -1 3395 184 9 8 chr11 26307744 26308390 -124475163 + L1MB3 LINE L1 5526 6172 -11 2383 42 42 0 chr11 26309036 26309325 -124474228 - AluY SINE Alu -10 301 1 1089 323 32 5 chr11 26309596 26309965 -124473588 - LTR33 LTR ERVL 0 521 143 614 350 64 50 chr11 26310794 26311297 -124472256 - LTR67 LTR ERVL -6 551 42 24 91 0 0 chr11 26311862 26311928 -124471625 + AT_rich Low_complexity Low_complexity 1 66 0 379 240 30 0 chr11 26312015 26312115 -124471438 - MER5A DNA MER1_type -77 112 10 376 231 0 0 chr11 26312176 26312267 -124471286 + MER103 DNA DNA 2 92 -74 181 342 51 0 chr11 26312710 26312789 -124470764 - L2 LINE L2 -6 3307 3225 736 261 65 26 chr11 26312870 26313176 -124470377 + L1M4 LINE L1 4591 4908 -1238 516 81 5 96 chr11 26313624 26313821 -124469732 + (TA)n Simple_repeat Simple_repeat 2 180 0 368 60 43 76 chr11 26313835 26314020 -124469533 + (TA)n Simple_repeat Simple_repeat 2 180 0 419 125 100 6 chr11 26314021 26314181 -124469372 + (CTATA)n Simple_repeat Simple_repeat 1 175 0 568 46 16 88 chr11 26314211 26314405 -124469148 + (TA)n Simple_repeat Simple_repeat 1 180 0 374 246 30 5 chr11 26315025 26315177 -124468376 - LTR37A LTR ERV1 -2 424 296 8906 213 51 8 chr11 26315196 26315544 -124468009 - L1PB1 LINE L1 -1 6866 6534 345 24 0 0 chr11 26315544 26315586 -124467967 + (TG)n Simple_repeat Simple_repeat 2 43 0 8906 213 51 8 chr11 26315586 26319765 -124463788 - L1PB1 LINE L1 -333 6534 2057 1811 194 36 14 chr11 26319765 26320121 -124463432 - THE1B LTR MaLR 0 364 1 10794 111 21 3 chr11 26320121 26321660 -124461893 - THE1B-int LTR MaLR 0 1580 15 1977 171 36 14 chr11 26321660 26322016 -124461537 - THE1B LTR MaLR 0 364 1 4652 151 12 8 chr11 26322016 26323486 -124460067 - L1PB1 LINE L1 -4802 2061 3 230 282 13 0 chr11 26323537 26323615 -124459938 - LTR37B LTR ERV1 -192 276 198 351 289 72 28 chr11 26324195 26324375 -124459178 + L2 LINE L2 2701 2888 -426 612 188 8 8 chr11 26324455 26324588 -124458965 - L1MB1 LINE L1 0 6168 6036 582 179 34 0 chr11 26324643 26324760 -124458793 + L1MA7 LINE L1 6160 6280 -11 3830 197 69 49 chr11 26324772 26325749 -124457804 - L1MA10 LINE L1 -40 6294 5297 183 42 0 0 chr11 26325749 26325773 -124457780 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 3830 197 69 49 chr11 26325773 26325842 -124457711 - L1MA10 LINE L1 -1037 5297 5231 289 356 9 0 chr11 26325847 26325962 -124457591 + MIR SINE MIR 110 225 -37 815 179 112 5 chr11 26325977 26326173 -124457380 + L1 LINE L1 3857 4073 -2073 320 359 71 5 chr11 26326178 26326362 -124457191 + L2 LINE L2 2919 3114 -199 623 255 36 88 chr11 26326445 26326696 -124456857 - MIR SINE MIR -22 240 3 7082 48 7 2 chr11 26326744 26327888 -124455665 + L1PA5 LINE L1 4999 6146 -8 28 61 0 0 chr11 26328552 26328601 -124454952 + AT_rich Low_complexity Low_complexity 1 49 0 234 188 0 0 chr11 26329965 26330013 -124453540 + (TA)n Simple_repeat Simple_repeat 2 49 0 226 312 0 11 chr11 26330013 26330106 -124453447 + CT-rich Low_complexity Low_complexity 1 92 0 180 0 0 0 chr11 26330620 26330640 -124452913 + (TG)n Simple_repeat Simple_repeat 1 20 0 7488 89 16 7 chr11 26331631 26333496 -124450057 - L1PA7 LINE L1 -2 6152 4277 1846 197 8 11 chr11 26333565 26333931 -124449622 - MLT1A1 LTR MaLR 0 365 1 795 176 0 0 chr11 26334924 26335055 -124448498 + LTR17 LTR ERV1 446 576 -204 367 288 114 68 chr11 26335472 26335691 -124447862 - LTR33 LTR ERVL -278 243 15 22 35 0 0 chr11 26337051 26337080 -124446473 + AT_rich Low_complexity Low_complexity 1 29 0 2384 194 51 74 chr11 26337795 26338593 -124444960 + LTR17 LTR ERV1 1 780 0 383 130 0 0 chr11 26338593 26338647 -124444906 + THE1B LTR MaLR 111 164 -200 1498 127 18 0 chr11 26338648 26338877 -124444676 - AluSg/x SINE Alu -5 307 75 756 307 91 20 chr11 26339146 26339599 -124443954 + L1M4 LINE L1 4591 5075 -1071 441 236 103 30 chr11 26339599 26339764 -124443789 - MLT1F1 LTR MaLR -5 562 386 253 365 146 0 chr11 26341677 26341869 -124441684 - MIR SINE MIR -10 252 33 314 320 94 39 chr11 26342194 26342397 -124441156 - L2 LINE L2 -768 2546 2333 191 293 128 23 chr11 26342397 26342530 -124441023 - L2 LINE L2 -1125 2189 2043 324 311 40 34 chr11 26342574 26342722 -124440831 - L2 LINE L2 -1268 2046 1898 3745 179 27 5 chr11 26344015 26344785 -124438768 - L1MA4 LINE L1 -1 6299 5513 281 56 0 0 chr11 26344791 26344827 -124438726 + MSTA LTR MaLR 1 36 -392 978 191 143 9 chr11 26344827 26345037 -124438516 + MSTA LTR MaLR 3 240 -188 4006 23 8 0 chr11 26345146 26345618 -124437935 + L1PA3 LINE L1 5676 6151 -4 185 32 0 65 chr11 26345622 26345653 -124437900 + (TAAAAA)n Simple_repeat Simple_repeat 2 30 0 307 284 99 57 chr11 26345693 26345834 -124437719 - MIR3 SINE MIR -28 180 34 568 228 24 0 chr11 26346644 26346771 -124436782 + FRAM SINE Alu 16 145 -31 1658 178 101 32 chr11 26346771 26347286 -124436267 + MLT2A2 LTR ERVL 2 554 0 24 0 0 0 chr11 26348452 26348476 -124435077 + AT_rich Low_complexity Low_complexity 1 24 0 1738 40 22 0 chr11 26348477 26348704 -124434849 - L1PA4 LINE L1 -743 5403 5172 6431 30 0 0 chr11 26348704 26349461 -124434092 + L1PA4 LINE L1 5392 6152 -3 5459 186 18 31 chr11 26349592 26350781 -124432772 + L1P LINE L1 3180 4352 -1794 2581 102 17 59 chr11 26350781 26351241 -124432312 + HERVH LTR ERV1 1609 2049 -5664 33856 50 33 2 chr11 26351348 26355733 -124427820 - L1P LINE L1 -1623 4523 1 29 78 0 0 chr11 26355897 26355961 -124427592 + AT_rich Low_complexity Low_complexity 1 64 0 419 337 62 55 chr11 26356074 26356347 -124427206 - LTR33 LTR ERVL 0 521 247 959 280 55 9 chr11 26356459 26357035 -124426518 - L1 LINE L1 -3597 3968 3360 8725 247 22 13 chr11 26357168 26359702 -124423851 - L1 LINE L1 -1132 5014 2459 1853 301 15 18 chr11 26359965 26360788 -124422765 - L1P LINE L1 -3382 2764 1945 561 357 34 24 chr11 26360790 26361087 -124422466 + MLT1K LTR MaLR 103 402 -186 * 1427 240 100 57 chr11 26361065 26361836 -124421717 + MER63C DNA MER1_type 84 887 -43 24 32 0 0 chr11 26361908 26361939 -124421614 + AT_rich Low_complexity Low_complexity 1 31 0 194 294 33 33 chr11 26361984 26362076 -124421477 + MIR SINE MIR 101 192 -70 34 42 0 0 chr11 26363627 26363675 -124419878 + AT_rich Low_complexity Low_complexity 1 48 0 2296 247 55 37 chr11 26364970 26366307 -124417246 + L1M3a LINE L1 475 1814 -4221 757 181 97 18 chr11 26366318 26366561 -124416992 + MSTA LTR MaLR 3 274 -101 697 214 28 112 chr11 26366568 26366799 -124416754 + MLT2D LTR ERVL 28 232 -182 324 0 0 0 chr11 26366799 26366835 -124416718 + (TTG)n Simple_repeat Simple_repeat 2 37 0 697 214 28 112 chr11 26366835 26366888 -124416665 + MLT2D LTR ERVL 232 288 -126 607 296 86 44 chr11 26367502 26367887 -124415666 - MER57A LTR ERV1 0 403 3 457 335 90 0 chr11 26367935 26368135 -124415418 + MIR SINE MIR 35 252 -10 336 64 0 0 chr11 26368262 26368309 -124415244 + (CA)n Simple_repeat Simple_repeat 2 48 0 817 204 84 0 chr11 26368310 26368501 -124415052 - MER2 DNA MER2_type -1 344 138 23 0 0 0 chr11 26368501 26368524 -124415029 + AT_rich Low_complexity Low_complexity 1 23 0 3293 194 61 15 chr11 26369978 26370768 -124412785 - LTR1B LTR ERV1 0 826 1 3267 195 61 15 chr11 26371219 26372009 -124411544 - LTR1B LTR ERV1 0 826 1 923 190 63 15 chr11 26372044 26372249 -124411304 + L1MC3 LINE L1 7090 7304 -481 783 267 18 13 chr11 26372262 26372487 -124411066 - MLT2B1 LTR ERVL -285 235 10 1272 165 13 4 chr11 26372493 26372730 -124410823 + L1MC3 LINE L1 7479 7717 -68 403 243 14 74 chr11 26372731 26372927 -124410626 - MER3 DNA MER1_type -56 153 1 584 137 0 39 chr11 26373815 26373917 -124409636 + L1 LINE L1 4881 4978 -1168 558 156 21 0 chr11 26373919 26374015 -124409538 + L1PB4 LINE L1 6059 6156 0 257 352 0 11 chr11 26374221 26374312 -124409241 - L2 LINE L2 -19 3294 3205 27 62 0 0 chr11 26375495 26375543 -124408010 + AT_rich Low_complexity Low_complexity 1 48 0 24 0 0 0 chr11 26375587 26375611 -124407942 + AT_rich Low_complexity Low_complexity 1 24 0 303 235 41 31 chr11 26375672 26375770 -124407783 - L1MC4 LINE L1 -1330 6712 6614 * 312 218 69 35 chr11 26375697 26375784 -124407769 + L1MC4 LINE L1 6614 6703 -1339 878 25 158 0 chr11 26376962 26377082 -124406471 + MER85 DNA T2_type 1 139 0 45 34 0 0 chr11 26377331 26377390 -124406163 + AT_rich Low_complexity Low_complexity 1 59 0 276 53 0 0 chr11 26378411 26378449 -124405104 + (TG)n Simple_repeat Simple_repeat 2 39 0 2242 190 26 2 chr11 26378473 26378895 -124404658 + MSTB1 LTR MaLR 1 432 0 304 299 130 7 chr11 26378897 26379051 -124404502 + MIR SINE MIR 53 225 -37 787 209 13 0 chr11 26379893 26380046 -124403507 + Tigger1 DNA MER2_type 1 155 -2263 * 971 201 0 0 chr11 26380035 26380214 -124403339 + Tigger1 DNA MER2_type 2240 2418 0 1589 215 111 13 chr11 26380215 26380610 -124402943 - MLT1C LTR MaLR -33 434 1 25 51 0 0 chr11 26380693 26380732 -124402821 + AT_rich Low_complexity Low_complexity 1 39 0 2018 92 46 3 chr11 26380764 26381048 -124402505 - AluY SINE Alu -15 296 1 22 0 0 0 chr11 26381207 26381229 -124402324 + AT_rich Low_complexity Low_complexity 1 22 0 26 64 0 0 chr11 26381495 26381542 -124402011 + AT_rich Low_complexity Low_complexity 1 47 0 244 287 78 26 chr11 26381561 26381676 -124401877 - MIR SINE MIR -58 204 84 216 0 0 0 chr11 26381853 26381877 -124401676 + (CCCTAA)n Simple_repeat Simple_repeat 5 28 0 1615 184 75 22 chr11 26383035 26383355 -124400198 + MER1B DNA MER1_type 1 337 0 253 276 63 55 chr11 26384053 26384180 -124399373 - MIR SINE MIR -30 232 105 318 272 78 126 chr11 26384196 26384593 -124398960 - L1ME4a LINE L1 -243 5878 5501 1477 197 37 10 chr11 26385229 26385528 -124398025 + AluJb SINE Alu 5 311 -1 1541 149 10 14 chr11 26386423 26386711 -124396842 - AluSp SINE Alu -26 287 1 240 200 18 18 chr11 26386730 26386785 -124396768 + (TGG)n Simple_repeat Simple_repeat 2 56 0 1100 208 42 19 chr11 26386990 26387250 -124396303 + AluJb SINE Alu 46 311 -1 2138 89 10 10 chr11 26388129 26388432 -124395121 - AluSq SINE Alu -10 303 1 213 204 23 0 chr11 26388451 26388495 -124395058 + (TGG)n Simple_repeat Simple_repeat 2 46 0 324 318 83 0 chr11 26388601 26388733 -124394820 - MIR3 SINE MIR -30 178 36 2412 71 0 3 chr11 26389630 26389940 -124393613 - AluY SINE Alu -2 309 1 22 35 0 0 chr11 26389948 26389977 -124393576 + AT_rich Low_complexity Low_complexity 1 29 0 372 313 12 0 chr11 26390030 26390190 -124393363 + (TA)n Simple_repeat Simple_repeat 2 163 0 7800 42 5 3 chr11 26390335 26391522 -124392031 - L1P1 LINE L1 -563 5592 4403 1500 138 26 1 chr11 26391623 26392002 -124391551 - L1P5 LINE L1 -650 5501 5115 1549 124 102 102 chr11 26392041 26392405 -124391148 + THE1B LTR MaLR 1 364 0 487 92 0 0 chr11 26392405 26392470 -124391083 + THE1B-int LTR MaLR 1 65 -1515 1329 156 12 41 chr11 26392470 26392713 -124390840 + THE1B LTR MaLR 56 291 -73 2680 207 21 45 chr11 26392812 26393624 -124389929 + L1MD2 LINE L1 5099 5899 -460 337 343 48 0 chr11 26593770 26593916 -124189637 + MIR SINE MIR 110 262 0 1100 265 91 56 chr11 26593979 26594524 -124189029 + MLT1F1 LTR MaLR 1 565 -2 249 163 0 0 chr11 26594650 26594699 -124188854 + (CA)n Simple_repeat Simple_repeat 2 50 0 678 230 29 25 chr11 26594871 26595075 -124188478 + MER3 DNA MER1_type 5 209 0 4424 249 35 40 chr11 26595612 26598194 -124185359 - L1PA13 LINE L1 -3696 3101 2 271 240 29 48 chr11 26598581 26598685 -124184868 - L1ME4a LINE L1 -70 6051 5950 822 189 0 13 chr11 26598846 26599005 -124184548 - MER39 LTR ERV1 -17 690 534 195 184 0 0 chr11 26599010 26599048 -124184505 + (TATATG)n Simple_repeat Simple_repeat 1 38 0 470 290 72 55 chr11 26599204 26599385 -124184168 + L1MEc LINE L1 1768 1958 -4438 1638 177 63 28 chr11 26599385 26599747 -124183806 - THE1C LTR MaLR 0 375 1 470 290 72 55 chr11 26599747 26599872 -124183681 + L1MEc LINE L1 1958 2079 -4317 203 278 14 0 chr11 26599876 26599948 -124183605 + A-rich Low_complexity Low_complexity 4 76 0 4908 110 9 1 chr11 26600491 26601803 -124181750 + L1PA10 LINE L1 4615 5932 -236 7046 256 9 10 chr11 26601915 26602909 -124180644 + L1P LINE L1 2508 3500 -2646 2108 101 40 0 chr11 26602909 26603206 -124180347 + AluY SINE Alu 1 309 -2 7046 256 9 10 chr11 26603206 26604179 -124179374 + L1P LINE L1 3500 4473 -1673 * 42947 49 3 2 chr11 26604178 26609960 -124173593 + L1PA4 LINE L1 3 5789 -366 1013 47 0 0 chr11 26609960 26610087 -124173466 + L1PA4 LINE L1 6020 6147 -8 2950 62 3 3 chr11 26610101 26610487 -124173066 + L1PA4 LINE L1 5770 6155 0 3289 226 6 6 chr11 26610487 26611278 -124172275 + L1P LINE L1 4461 5251 -895 940 147 45 0 chr11 26611380 26611567 -124171986 + L1PA10 LINE L1 5984 6177 0 189 74 0 0 chr11 26612572 26612599 -124170954 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1163 213 8 4 chr11 26612973 26613213 -124170340 + MLT1B LTR MaLR 1 241 -149 273 231 66 0 chr11 26615487 26615498 -124168055 - L1MA10 LINE L1 -3 6331 6321 423 242 59 26 chr11 26615498 26615651 -124167902 - L1ME2 LINE L1 -9 6155 5998 24 32 0 0 chr11 26615716 26615747 -124167806 + AT_rich Low_complexity Low_complexity 1 31 0 25 0 0 0 chr11 26615832 26615857 -124167696 + AT_rich Low_complexity Low_complexity 1 25 0 357 188 154 0 chr11 26616063 26616180 -124167373 - L1 LINE L1 -840 5306 5172 3121 167 41 35 chr11 26616262 26616925 -124166628 - L1MA3 LINE L1 -21 6284 5618 * 3659 182 33 44 chr11 26616922 26618102 -124165451 + L1M2 LINE L1 4519 5689 -602 258 32 0 0 chr11 26618122 26618153 -124165400 + (CA)n Simple_repeat Simple_repeat 1 31 0 1708 243 60 19 chr11 26618161 26618643 -124164910 - L1 LINE L1 -1008 5138 4628 2506 56 3 3 chr11 26618643 26618949 -124164604 - AluY SINE Alu -5 306 1 1708 243 60 19 chr11 26618949 26619035 -124164518 - L1 LINE L1 -1518 4628 4547 488 192 96 8 chr11 26619093 26619218 -124164335 - L1MA3 LINE L1 -1463 4683 4548 2138 195 25 7 chr11 26619741 26620176 -124163377 + L1MA9 LINE L1 5556 5998 -314 1334 88 0 0 chr11 26621367 26621538 -124162015 + AluY SINE Alu 131 301 -10 389 274 47 28 chr11 26622607 26622713 -124160840 - MIR SINE MIR -62 146 39 35 0 0 0 chr11 26623227 26623262 -124160291 + AT_rich Low_complexity Low_complexity 1 35 0 593 231 75 9 chr11 26623537 26623881 -124159672 - L1ME1 LINE L1 -5 6579 6184 918 160 19 87 chr11 26623888 26624094 -124159459 - AluSg/x SINE Alu 0 312 121 1422 284 33 2 chr11 26624138 26624624 -124158929 - L1ME1 LINE L1 -389 6195 5695 222 279 16 0 chr11 26624625 26624686 -124158867 + (TG)n Simple_repeat Simple_repeat 1 62 0 14209 31 6 0 chr11 26625048 26627520 -124156033 + L1PA4 LINE L1 3673 6152 -3 817 269 48 6 chr11 26627531 26627843 -124155710 - L1ME1 LINE L1 -1249 5315 4991 2982 161 10 44 chr11 26627859 26628467 -124155086 - L1MC2 LINE L1 -1 6343 5754 1349 259 66 23 chr11 26628704 26629217 -124154336 - L1ME1 LINE L1 -1926 4638 4104 322 325 22 61 chr11 26629830 26630058 -124153495 - L1ME1 LINE L1 -5774 271 53 460 348 34 0 chr11 26630403 26630581 -124152972 + LTR33 LTR ERVL 1 184 -337 725 161 49 0 chr11 26630581 26630724 -124152829 + L1MA7 LINE L1 5959 6108 -183 22 0 0 0 chr11 26630799 26630821 -124152732 + AT_rich Low_complexity Low_complexity 1 22 0 319 294 33 0 chr11 26631093 26631185 -124152368 + L2 LINE L2 2530 2624 -690 191 374 32 52 chr11 26631212 26631367 -124152186 + L2 LINE L2 2783 2933 -380 241 335 81 40 chr11 26631405 26631653 -124151900 + L2 LINE L2 3016 3273 -40 24 67 0 0 chr11 26632632 26632677 -124150876 + AT_rich Low_complexity Low_complexity 1 45 0 2182 115 0 10 chr11 26632794 26633099 -124150454 - AluSx SINE Alu -10 302 1 411 337 24 12 chr11 26633099 26633268 -124150285 - MLT1H1 LTR MaLR -384 171 1 28226 108 9 8 chr11 26633714 26638909 -124144644 + L1PA7 LINE L1 957 6154 0 1499 219 62 21 chr11 26638940 26639360 -124144193 + L1MB7 LINE L1 5748 6184 0 387 244 17 52 chr11 26639768 26639883 -124143670 - MLT2B3 LTR ERVL -208 346 236 1160 211 13 4 chr11 26639945 26640173 -124143380 - MLT2B3 LTR ERVL -323 231 2 500 338 70 5 chr11 26642037 26642238 -124141315 + MIR SINE MIR 29 242 -20 182 191 21 0 chr11 26642544 26642591 -124140962 + GA-rich Low_complexity Low_complexity 2 49 0 198 0 0 0 chr11 26642731 26642753 -124140800 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 288 0 0 0 chr11 26643072 26643104 -124140449 + (TG)n Simple_repeat Simple_repeat 2 33 0 730 297 42 85 chr11 26643513 26643783 -124139770 - L2 LINE L2 -23 3290 3049 611 63 74 11 chr11 26643783 26643878 -124139675 + L1PA2 LINE L1 6054 6154 -1 730 297 42 85 chr11 26643878 26644142 -124139411 - L2 LINE L2 -264 3049 2775 304 328 71 94 chr11 26645269 26645791 -124137762 - L2 LINE L2 0 3313 2804 3572 172 20 20 chr11 26645859 26646437 -124137116 + L1MC1 LINE L1 5620 6200 -133 1702 195 33 12 chr11 26646437 26646771 -124136782 - MER2 DNA MER2_type -3 341 1 3572 172 20 20 chr11 26646771 26646903 -124136650 + L1MC1 LINE L1 6199 6330 -3 226 306 71 12 chr11 26647196 26647281 -124136272 - L2 LINE L2 -22 3250 3161 22 0 0 0 chr11 26648204 26648226 -124135327 + AT_rich Low_complexity Low_complexity 1 22 0 1919 164 50 73 chr11 26648265 26648760 -124134793 - L1MB8 LINE L1 -198 5980 5497 24 32 0 0 chr11 26648989 26649020 -124134533 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr11 26650401 26650429 -124133124 + AT_rich Low_complexity Low_complexity 1 28 0 3065 26 0 0 chr11 26651599 26651982 -124131571 + L1P2 LINE L1 5232 5615 -539 189 231 0 0 chr11 26652016 26652055 -124131498 + MER5A DNA MER1_type 151 189 0 587 374 89 31 chr11 26652058 26652697 -124130856 - L3 LINE CR1 -79 1498 823 1103 78 0 48 chr11 26653133 26653299 -124130254 - MLT2A1 LTR ERVL 0 444 287 638 218 47 80 chr11 26653319 26653497 -124130056 + MLT1E3 LTR MaLR 436 551 -4 231 196 0 0 chr11 26653765 26653811 -124129742 + GA-rich Low_complexity Low_complexity 1 46 0 193 287 35 69 chr11 26653838 26653925 -124129628 + MIR SINE MIR 61 144 -118 23 54 0 0 chr11 26655086 26655123 -124128430 + AT_rich Low_complexity Low_complexity 1 37 0 330 238 0 0 chr11 26655317 26655380 -124128173 - L1M2 LINE L1 -6785 64 2 2563 55 0 0 chr11 26655830 26656139 -124127414 - AluY SINE Alu -2 309 1 1769 165 10 0 chr11 26657068 26657365 -124126188 - AluJb SINE Alu -12 300 1 22 0 0 0 chr11 26657853 26657875 -124125678 + AT_rich Low_complexity Low_complexity 1 22 0 1392 129 33 0 chr11 26657879 26658119 -124125434 + L1MA1 LINE L1 6055 6302 0 1404 175 24 58 chr11 26658469 26658761 -124124792 - AluJo SINE Alu -18 294 13 243 0 0 0 chr11 26658929 26658956 -124124597 + (TC)n Simple_repeat Simple_repeat 2 28 0 180 0 0 0 chr11 26658955 26658975 -124124578 + (TA)n Simple_repeat Simple_repeat 1 20 0 * 247 358 80 25 chr11 26659066 26659267 -124124286 + MIR SINE MIR 1 212 -50 251 357 26 31 chr11 26659592 26659939 -124123614 + L2 LINE L2 2896 3313 0 27 29 0 0 chr11 26659972 26660006 -124123547 + AT_rich Low_complexity Low_complexity 1 34 0 429 339 21 42 chr11 26661220 26661503 -124122050 + L1MEc LINE L1 317 593 -5970 319 294 13 100 chr11 26661632 26661863 -124121690 + L1MEc LINE L1 1150 1360 -5024 1179 189 181 0 chr11 26663126 26663380 -124120173 + AluJo SINE Alu 1 300 -2 223 294 0 0 chr11 26663399 26663450 -124120103 - L2 LINE L2 -12 3260 3210 1712 189 39 13 chr11 26663604 26663991 -124119562 - L1MB3 LINE L1 0 6183 5787 798 237 33 63 chr11 26663991 26664041 -124119512 - MER74B LTR ERVL 0 622 572 2157 134 25 11 chr11 26664041 26664406 -124119147 - THE1C LTR MaLR -1 374 5 798 237 33 63 chr11 26664406 26664854 -124118699 - MER74B LTR ERVL -50 572 147 718 222 28 0 chr11 26664890 26665034 -124118519 - MER74A LTR ERVL -396 162 15 334 143 95 0 chr11 26665085 26665148 -124118405 - L1MB3 LINE L1 -391 5780 5712 452 228 70 13 chr11 26665609 26665767 -124117786 - L1MB4 LINE L1 -1 6179 6013 1990 117 0 7 chr11 26665826 26666138 -124117415 - AluSg SINE Alu 0 310 1 30 0 0 0 chr11 26667836 26667866 -124115687 + AT_rich Low_complexity Low_complexity 1 30 0 1428 231 9 0 chr11 26667949 26668274 -124115279 - L1 LINE L1 -1113 5033 4706 3210 202 55 25 chr11 26668306 26668697 -124114856 + L1MB1 LINE L1 5083 5461 -707 2161 182 36 5 chr11 26668697 26669110 -124114443 + MSTA LTR MaLR 1 426 -2 3210 202 55 25 chr11 26669110 26669710 -124113843 + L1MB1 LINE L1 5461 6113 -55 7400 199 31 20 chr11 26669711 26671662 -124111891 + L1MA4 LINE L1 3577 5540 -743 1355 99 0 0 chr11 26671680 26671852 -124111701 - AluSq SINE Alu -141 172 1 3597 165 28 30 chr11 26671854 26671932 -124111621 + L1MA4 LINE L1 5527 5604 -696 419 171 13 0 chr11 26671932 26672008 -124111545 + MADE1 DNA Mariner 4 80 0 3597 165 28 30 chr11 26672008 26672704 -124110849 + L1MA4 LINE L1 5604 6300 0 516 198 55 93 chr11 26672718 26672900 -124110653 + L1MA10 LINE L1 6115 6289 -45 1539 210 7 10 chr11 26672903 26673208 -124110345 - AluJb SINE Alu -8 304 1 315 0 0 0 chr11 26674435 26674470 -124109083 + (CA)n Simple_repeat Simple_repeat 1 35 0 4078 138 95 133 chr11 26674973 26676315 -124107238 + pTR5 LTR ERV1 743 2295 -143 8722 110 4 4 chr11 26677081 26678304 -124105249 + L1P3 LINE L1 63 1285 -5176 219 245 32 75 chr11 26679250 26679344 -124104209 - MIR SINE MIR -124 138 49 186 224 0 0 chr11 26679505 26679554 -124103999 + G-rich Low_complexity Low_complexity 4 52 0 1358 224 40 63 chr11 26679618 26680172 -124103381 + MER67C LTR ERV1 1 514 0 2698 216 5 26 chr11 26682033 26682599 -124100954 + MLT2B3 LTR ERVL 1 554 0 220 363 62 34 chr11 26683123 26683269 -124100284 - L2 LINE L2 -611 2703 2554 324 305 61 15 chr11 26683459 26683590 -124099963 + MIR SINE MIR 59 195 -67 274 373 31 52 chr11 26684442 26684543 -124099010 - MER91B DNA MER1_type 0 190 93 1615 183 0 27 chr11 26684543 26684844 -124098709 + AluJb SINE Alu 1 293 -19 274 373 31 52 chr11 26684844 26684935 -124098618 - MER91B DNA MER1_type -97 93 2 22 56 0 0 chr11 26685842 26685878 -124097675 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr11 26685977 26685998 -124097555 + AT_rich Low_complexity Low_complexity 1 21 0 453 147 0 0 chr11 26686148 26686223 -124097330 + MADE1 DNA Mariner 1 75 -5 23 0 0 0 chr11 26686223 26686246 -124097307 + AT_rich Low_complexity Low_complexity 1 23 0 490 264 108 65 chr11 26686274 26686342 -124097211 - MIR SINE MIR -21 241 177 1670 189 0 3 chr11 26686342 26686639 -124096914 + AluJb SINE Alu 1 296 -16 490 264 108 65 chr11 26686639 26686801 -124096752 - MIR SINE MIR -85 177 1 468 287 6 55 chr11 26688869 26689033 -124094520 - MIR SINE MIR 0 262 107 187 324 49 39 chr11 26690235 26690337 -124093216 - MIR SINE MIR -69 139 37 2195 62 0 21 chr11 26690636 26690976 -124092577 + AluY SINE Alu 1 334 0 1289 78 73 5 chr11 26691079 26691270 -124092283 - L1PB1 LINE L1 0 6151 5948 250 241 46 11 chr11 26691270 26691357 -124092196 - L1ME LINE L1 -521 5600 5511 8887 32 11 0 chr11 26691375 26693198 -124090355 - L1PA4 LINE L1 -13 6142 4293 265 388 32 11 chr11 26693202 26693390 -124090163 + L2 LINE L2 2696 2887 -427 288 355 0 0 chr11 26693604 26693697 -124089856 + L1PA15-16 LINE L1 1471 1563 -5286 297 315 0 0 chr11 26693697 26693789 -124089764 + L1PA15-16 LINE L1 1472 1563 -5286 * 3245 248 34 32 chr11 26693776 26694931 -124088622 + L1PBb LINE L1 691 1936 -4267 1694 128 201 26 chr11 26694931 26695275 -124088278 - MER4A LTR ERV1 0 664 261 620 113 21 10 chr11 26695275 26695372 -124088181 - MER4A LTR ERV1 -566 98 1 7821 241 15 24 chr11 26695372 26697878 -124085675 + L1PBb LINE L1 1933 4415 -1788 21 36 0 0 chr11 26697945 26697973 -124085580 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr11 26699698 26699722 -124083831 + AT_rich Low_complexity Low_complexity 1 24 0 2006 239 58 5 chr11 26703470 26704109 -124079444 - MER45R DNA AcHobo -1 1580 908 3849 81 4 13 chr11 26704112 26704654 -124078899 - L1PA8 LINE L1 -6 6166 5630 1032 156 0 0 chr11 26704654 26704834 -124078719 + (TA)n Simple_repeat Simple_repeat 1 180 0 249 197 0 0 chr11 26704876 26704952 -124078601 + (CA)n Simple_repeat Simple_repeat 2 77 0 207 0 0 0 chr11 26705280 26705303 -124078250 + (TA)n Simple_repeat Simple_repeat 1 23 0 782 328 3 24 chr11 26706209 26706496 -124077057 + LTR16A LTR ERVL 170 450 0 223 381 0 12 chr11 26706620 26706704 -124076849 - L2 LINE L2 -10 3262 3180 333 303 56 35 chr11 26707002 26707200 -124076353 - MLT1J LTR MaLR -23 488 287 318 368 96 6 chr11 26707452 26707797 -124075756 - L2 LINE L2 -1241 2073 1698 1852 187 39 0 chr11 26707991 26708355 -124075198 + L1MB1 LINE L1 5791 6168 0 287 350 51 13 chr11 26708680 26708837 -124074716 + MIR SINE MIR 66 228 -34 504 253 20 35 chr11 26710238 26710416 -124073137 + L1MB7 LINE L1 3825 4001 -2145 2136 144 14 27 chr11 26710416 26710785 -124072768 - THE1B LTR MaLR 0 364 1 504 253 20 35 chr11 26710785 26710808 -124072745 + L1MB7 LINE L1 4001 4023 -2123 501 224 0 0 chr11 26710812 26710924 -124072629 + L1PA16 LINE L1 6042 6153 -3 2592 239 28 42 chr11 26710927 26711001 -124072552 + L1MB7 LINE L1 5367 5441 -743 2283 107 7 0 chr11 26711001 26711309 -124072244 + AluSp SINE Alu 1 310 -3 2592 239 28 42 chr11 26711309 26712058 -124071495 + L1MB7 LINE L1 5441 6178 -6 1221 182 112 0 chr11 26712769 26713027 -124070526 - Tigger3(Golem) DNA MER2_type 0 3029 2743 1033 176 21 0 chr11 26713027 26713214 -124070339 + AluSg/x SINE Alu 121 311 -1 2724 128 51 8 chr11 26713219 26713324 -124070229 - Tigger3(Golem) DNA MER2_type -289 2740 2641 1466 198 30 17 chr11 26713324 26713622 -124069931 - AluJo SINE Alu -10 302 1 2724 128 51 8 chr11 26713622 26714010 -124069543 - Tigger3(Golem) DNA MER2_type -388 2641 2226 312 257 25 116 chr11 26714015 26714299 -124069254 + L1MC5 LINE L1 7381 7638 -323 347 260 101 48 chr11 26714423 26714631 -124068922 - L1MC4a LINE L1 -1919 5889 5671 321 287 43 0 chr11 26714662 26714756 -124068797 - MIR SINE MIR -67 141 44 183 42 0 0 chr11 26715225 26715249 -124068304 + (TTGG)n Simple_repeat Simple_repeat 1 24 0 1424 146 45 0 chr11 26715750 26715996 -124067557 - L1PA15 LINE L1 -2 6163 5907 2028 174 82 32 chr11 26716169 26716630 -124066923 - LTR2B LTR ERV1 0 490 7 23 0 0 0 chr11 26717168 26717191 -124066362 + AT_rich Low_complexity Low_complexity 1 23 0 230 242 76 30 chr11 26717708 26717774 -124065779 - L2 LINE L2 -31 3241 3173 301 362 0 29 chr11 26718607 26718712 -124064841 + L2 LINE L2 2898 2999 -314 1481 114 117 24 chr11 26718973 26719263 -124064290 - THE1C LTR MaLR -58 317 1 232 316 116 11 chr11 26719438 26719533 -124064020 + MIR SINE MIR 17 121 -87 211 353 20 7 chr11 26720972 26721125 -124062428 + (TA)n Simple_repeat Simple_repeat 1 155 0 314 233 33 33 chr11 26721260 26721350 -124062203 + MIR SINE MIR 116 205 -57 35 41 0 0 chr11 26721363 26721412 -124062141 + AT_rich Low_complexity Low_complexity 1 49 0 8553 251 39 38 chr11 26721841 26726382 -124057171 + L1PA12 LINE L1 1341 5376 -2208 422 268 23 50 chr11 26726383 26726597 -124056956 + LTR1 LTR ERV1 1 355 -600 189 171 0 0 chr11 26727311 26727346 -124056207 + CT-rich Low_complexity Low_complexity 3 37 0 890 243 78 16 chr11 26727540 26727783 -124055770 - MLT1E1 LTR MaLR -23 631 374 717 231 108 10 chr11 26727797 26727992 -124055561 - MLT1E1 LTR MaLR -382 272 59 23 33 0 0 chr11 26729184 26729214 -124054339 + AT_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chr11 26729605 26729630 -124053923 + AT_rich Low_complexity Low_complexity 1 25 0 1044 357 44 15 chr11 26729771 26730297 -124053256 - MLT2E LTR ERVL -41 587 47 24 32 0 0 chr11 26730489 26730520 -124053033 + AT_rich Low_complexity Low_complexity 1 31 0 453 325 80 10 chr11 26730871 26731071 -124052482 + MIR SINE MIR 48 261 -1 470 91 13 0 chr11 26731094 26731171 -124052382 + (TCTA)n Simple_repeat Simple_repeat 3 80 0 1636 123 4 0 chr11 26732909 26733160 -124050393 + L1P LINE L1 3809 4060 -2086 1883 159 0 116 chr11 26733511 26733864 -124049689 + Charlie3 DNA MER1_type 1 2685 -25 2321 263 26 60 chr11 26733878 26735227 -124048326 - L1M2 LINE L1 -4449 2759 1527 819 352 65 23 chr11 26736193 26736761 -124046792 - L1M2 LINE L1 -6566 643 52 304 245 51 20 chr11 26736848 26736946 -124046607 - L2 LINE L2 -369 2945 2845 321 307 123 6 chr11 26738513 26738676 -124044877 - LTR16A LTR ERVL -262 188 7 1255 255 48 82 chr11 26739687 26739729 -124043824 - MLT2B1 LTR ERVL 0 520 478 378 0 0 0 chr11 26739729 26739771 -124043782 + (TG)n Simple_repeat Simple_repeat 2 43 0 1255 255 48 82 chr11 26739771 26740266 -124043287 - MLT2B1 LTR ERVL -42 478 1 2094 112 0 26 chr11 26740429 26740742 -124042811 + AluSc SINE Alu 1 305 -4 216 182 0 0 chr11 26740766 26740810 -124042743 + (TA)n Simple_repeat Simple_repeat 1 44 0 2002 135 26 52 chr11 26741997 26742382 -124041171 + THE1C LTR MaLR 1 375 0 2083 148 54 36 chr11 26742698 26743229 -124040324 - MLT2A2 LTR ERVL 0 554 1 1278 86 0 0 chr11 26743580 26743742 -124039811 + AluY SINE Alu 137 298 -13 320 276 86 43 chr11 26743958 26744074 -124039479 - L2 LINE L2 -9 3263 3143 711 160 88 0 chr11 26744176 26744301 -124039252 + AluJb SINE Alu 1 136 -176 2590 55 0 0 chr11 26744301 26744609 -124038944 + AluY SINE Alu 1 308 -3 317 303 99 18 chr11 26744732 26744953 -124038600 - L1ME LINE L1 -616 5505 5267 260 115 173 0 chr11 26745175 26745227 -124038326 + HsTC2 DNA Tc2 3 63 -1835 756 224 84 49 chr11 26745345 26745730 -124037823 + MLT1J2 LTR MaLR 31 445 -1 1046 161 0 0 chr11 26746026 26746181 -124037372 - AluSg/x SINE Alu -23 289 135 273 119 0 0 chr11 26746181 26746223 -124037330 + (TTTA)n Simple_repeat Simple_repeat 4 45 0 1800 157 68 106 chr11 26746340 26746431 -124037122 - LTR8 LTR ERV1 -167 524 431 2169 129 3 0 chr11 26746431 26746734 -124036819 - AluSx SINE Alu -5 307 4 1800 157 68 106 chr11 26746734 26747171 -124036382 - LTR8 LTR ERV1 -260 431 16 2419 65 7 0 chr11 26747179 26747471 -124036082 - AluSq SINE Alu -19 294 1 506 314 43 0 chr11 26747476 26747661 -124035892 + L2 LINE L2 2550 2742 -572 212 395 23 0 chr11 26747830 26747916 -124035637 - MER91B DNA MER1_type -1 189 102 276 30 0 0 chr11 26747917 26747950 -124035603 + (CA)n Simple_repeat Simple_repeat 2 34 0 1498 200 18 146 chr11 26748888 26749389 -124034164 - MER70A LTR ERVL 0 472 36 184 331 101 50 chr11 26749491 26749581 -124033972 - MIR SINE MIR -72 190 89 2389 151 0 3 chr11 26749581 26749945 -124033608 - THE1B LTR MaLR -1 363 1 184 331 101 50 chr11 26749945 26749993 -124033560 - MIR SINE MIR -173 89 45 21 36 0 0 chr11 26749993 26750021 -124033532 + AT_rich Low_complexity Low_complexity 1 28 0 278 393 52 6 chr11 26750089 26750262 -124033291 + L2 LINE L2 2559 2739 -575 282 73 0 0 chr11 26750462 26750503 -124033050 + (TG)n Simple_repeat Simple_repeat 2 42 0 247 113 0 48 chr11 26750704 26750766 -124032787 - LTR66 LTR ERVL -154 456 398 214 205 0 0 chr11 26750767 26750806 -124032747 + (TA)n Simple_repeat Simple_repeat 1 39 0 257 250 24 0 chr11 26750807 26750891 -124032662 - L1MC4 LINE L1 -1340 6702 6617 236 258 0 22 chr11 26750898 26750987 -124032566 - L1MC4 LINE L1 -1339 6703 6617 * 241 267 23 0 chr11 26750944 26751030 -124032523 + L1MC4 LINE L1 6614 6701 -1341 268 276 23 0 chr11 26751032 26751119 -124032434 - L1MC4 LINE L1 -1339 6703 6615 261 210 0 0 chr11 26751120 26751182 -124032371 + (TA)n Simple_repeat Simple_repeat 2 63 0 230 245 0 43 chr11 26751182 26751276 -124032277 - L1MC4 LINE L1 -1339 6703 6614 393 133 67 0 chr11 26751277 26751367 -124032186 + (CATATA)n Simple_repeat Simple_repeat 5 100 0 249 270 0 0 chr11 26751373 26751462 -124032091 - L1MC4 LINE L1 -1339 6703 6615 327 104 0 0 chr11 26751465 26751513 -124032040 + (CATATA)n Simple_repeat Simple_repeat 2 49 0 226 282 24 0 chr11 26751516 26751601 -124031952 + L1MC4 LINE L1 6617 6703 -1339 * 252 244 23 0 chr11 26751573 26751659 -124031894 - L1MC4 LINE L1 -1339 6703 6616 208 256 0 0 chr11 26751661 26751704 -124031849 + (TATATG)n Simple_repeat Simple_repeat 5 47 0 2211 118 0 0 chr11 26752840 26753145 -124030408 + AluSc SINE Alu 1 305 -4 1994 124 20 7 chr11 26753636 26753935 -124029618 - AluSq SINE Alu -6 307 5 288 0 0 0 chr11 26754080 26754112 -124029441 + (CA)n Simple_repeat Simple_repeat 2 33 0 227 264 69 0 chr11 26754319 26754391 -124029162 + MIR SINE MIR 53 129 -79 350 205 51 0 chr11 26756159 26756237 -124027316 + MER103 DNA DNA 70 151 -15 2256 64 10 17 chr11 26756648 26756944 -124026609 + AluY SINE Alu 1 294 -17 4470 50 7 0 chr11 26757184 26757746 -124025807 + L1PA4 LINE L1 5590 6155 0 271 140 18 18 chr11 26757814 26757871 -124025682 - L1MB2 LINE L1 -7 6164 6108 2199 109 3 3 chr11 26758001 26758305 -124025248 + AluSq SINE Alu 1 304 -9 4613 164 11 19 chr11 26758321 26759220 -124024333 + L1MB3 LINE L1 5285 6176 -7 23 0 0 0 chr11 26759638 26759661 -124023892 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr11 26759719 26759740 -124023813 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr11 26761042 26761070 -124022483 + AT_rich Low_complexity Low_complexity 1 28 0 1339 166 21 21 chr11 26761562 26761845 -124021708 - L1MA4A LINE L1 -10 6293 6011 1929 137 14 49 chr11 26761845 26762211 -124021342 + L1MA4A LINE L1 5652 6004 -299 381 258 8 76 chr11 26763972 26764104 -124019449 + MER5A DNA MER1_type 67 189 0 6137 33 0 0 chr11 26764621 26765346 -124018207 - L1PA4 LINE L1 -3 6152 5428 6204 39 7 1 chr11 26765346 26766158 -124017395 + L1PA4 LINE L1 4617 5432 -723 213 39 0 0 chr11 26766557 26766583 -124016970 + (A)n Simple_repeat Simple_repeat 1 26 0 2010 151 0 19 chr11 26766602 26766914 -124016639 + AluSx SINE Alu 1 306 -6 22 35 0 0 chr11 26767023 26767052 -124016501 + AT_rich Low_complexity Low_complexity 1 29 0 209 330 134 0 chr11 26767064 26767176 -124016377 - MIR SINE MIR -132 130 4 22 35 0 0 chr11 26768790 26768819 -124014734 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chr11 26768873 26768908 -124014645 + AT_rich Low_complexity Low_complexity 1 35 0 2273 133 10 31 chr11 26768936 26769319 -124014234 + THE1C LTR MaLR 1 375 0 35 0 0 0 chr11 26769320 26769355 -124014198 + AT_rich Low_complexity Low_complexity 1 35 0 260 398 16 0 chr11 26769685 26769813 -124013740 + MIR3 SINE MIR 74 203 -5 2254 179 33 12 chr11 26771231 26771650 -124011903 + MSTA LTR MaLR 1 428 0 2949 181 48 0 chr11 26771650 26772192 -124011361 + MSTA-int LTR MaLR 1 568 -1083 * 5111 172 44 0 chr11 26772190 26773073 -124010480 + MSTA-int LTR MaLR 728 1649 -2 2318 137 72 5 chr11 26773075 26773476 -124010077 + MSTA LTR MaLR 1 428 0 233 250 36 18 chr11 26775169 26775225 -124008328 - MIR SINE MIR -200 62 6 296 302 216 7 chr11 26775751 26775890 -124007663 + MIR SINE MIR 30 197 -65 540 306 12 12 chr11 26775901 26776074 -124007479 - MER5B DNA MER1_type -5 173 1 715 284 53 9 chr11 26776760 26777081 -124006472 + L1ME1 LINE L1 2432 2766 -3380 798 269 34 57 chr11 26777118 26777319 -124006234 + L1ME1 LINE L1 2860 3064 -3082 1468 234 0 0 chr11 26777319 26777628 -124005925 + AluJo SINE Alu 1 309 0 798 269 34 57 chr11 26777628 26777870 -124005683 + L1ME1 LINE L1 3064 3293 -2853 2385 71 3 7 chr11 26777870 26778179 -124005374 + AluY SINE Alu 1 308 -3 798 269 34 57 chr11 26778179 26778239 -124005314 + L1ME1 LINE L1 3293 3353 -2793 367 240 81 47 chr11 26778313 26778571 -124004982 + L1ME1 LINE L1 4288 4554 -1592 1500 218 63 24 chr11 26778572 26778953 -124004600 - MSTD LTR MaLR 0 396 1 5323 265 71 25 chr11 26778971 26780598 -124002955 - MSTD-int LTR MaLR -19 1716 16 441 0 0 0 chr11 26780612 26780661 -124002892 + (TG)n Simple_repeat Simple_repeat 2 50 0 1310 228 111 8 chr11 26780661 26781006 -124002547 - MSTD LTR MaLR -15 381 1 427 267 64 11 chr11 26781065 26781252 -124002301 + L1ME1 LINE L1 4617 4813 -1333 41297 62 5 0 chr11 26781329 26787452 -123996101 + L1PA5 LINE L1 5 6148 -6 871 272 35 91 chr11 26787448 26787988 -123995565 + L1ME1 LINE L1 5548 6057 -109 * 1234 190 36 4 chr11 26787993 26788240 -123995313 - L1MC3 LINE L1 -373 7412 7158 709 230 35 6 chr11 26788272 26788446 -123995107 - L1MD3 LINE L1 -1112 6883 6705 1470 182 64 42 chr11 26788859 26789189 -123994364 - MER1B DNA MER1_type 0 337 1 316 223 97 29 chr11 26790087 26790190 -123993363 - MIR SINE MIR -39 223 114 1477 252 84 79 chr11 26791645 26792229 -123991324 - MLT1E LTR MaLR -4 589 3 235 363 57 8 chr11 26792251 26792375 -123991178 - MIR3 SINE MIR -52 156 27 855 253 10 5 chr11 26792390 26792588 -123990965 - MER58A DNA MER1_type -15 209 11 259 302 68 5 chr11 26792872 26792979 -123990574 - MIR SINE MIR -67 141 36 613 315 98 25 chr11 26793096 26793455 -123990098 - L2 LINE L2 -1937 1377 993 338 271 36 71 chr11 26793470 26793610 -123989943 + MIR SINE MIR 63 197 -65 966 219 8 36 chr11 26794060 26794136 -123989417 + MLT1D LTR MaLR 6 83 -422 2477 111 19 6 chr11 26794136 26794495 -123989058 + THE1B LTR MaLR 1 364 0 966 219 8 36 chr11 26794495 26794665 -123988888 + MLT1D LTR MaLR 83 245 -260 894 233 68 5 chr11 26794667 26794873 -123988680 + MLT1D LTR MaLR 280 498 -7 2005 114 40 10 chr11 26795491 26795790 -123987763 - AluSg SINE Alu -2 308 1 438 320 70 13 chr11 26796285 26796513 -123987040 - MIR SINE MIR -9 253 13 621 290 101 31 chr11 26797266 26797583 -123985970 - L2 LINE L2 -2 3311 2973 696 223 131 0 chr11 26797633 26797808 -123985745 - MER3 DNA MER1_type -5 204 7 1034 324 44 33 chr11 26797816 26798335 -123985218 - L2 LINE L2 -407 2907 2383 206 365 14 0 chr11 26798383 26798457 -123985096 - L2 LINE L2 -945 2369 2295 4331 252 87 36 chr11 26798463 26801328 -123982225 + L1M3c LINE L1 4 2678 -3532 286 236 14 0 chr11 26801730 26801802 -123981751 - MLT1A1 LTR MaLR -2 363 291 325 333 70 8 chr11 26802576 26802715 -123980838 + MIR SINE MIR 28 173 -66 23 35 6 0 chr11 26804667 26804739 -123978814 + AT_rich Low_complexity Low_complexity 1 37 0 243 103 0 0 chr11 26804822 26804861 -123978692 + (TG)n Simple_repeat Simple_repeat 1 39 0 238 284 67 37 chr11 26804982 26805116 -123978437 + L1MEc LINE L1 215 352 -6044 318 301 97 47 chr11 26805201 26805729 -123977824 + L1MEc LINE L1 499 1052 -5344 997 203 4 35 chr11 26805730 26805962 -123977591 + AluJb SINE Alu 85 309 -3 292 240 25 16 chr11 26805966 26806087 -123977466 + L1MEc LINE L1 1005 1126 -5079 803 206 57 6 chr11 26806088 26806285 -123977268 + MSTC LTR MaLR 219 396 0 1837 132 10 26 chr11 26806352 26806656 -123976897 + AluSx SINE Alu 1 299 -13 663 284 21 58 chr11 26807571 26807787 -123975766 - L1ME LINE L1 -549 5615 5418 1828 149 22 0 chr11 26807787 26807971 -123975582 - AluSx SINE Alu 0 320 126 234 0 0 0 chr11 26807971 26807997 -123975556 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1828 149 22 0 chr11 26807997 26808126 -123975427 - AluSx SINE Alu -194 126 1 663 284 21 58 chr11 26808126 26808361 -123975192 - L1ME LINE L1 -746 5418 5176 2313 271 49 14 chr11 26808685 26809339 -123974214 - MER76 LTR ERV 0 688 12 27 0 0 0 chr11 26809403 26809430 -123974123 + AT_rich Low_complexity Low_complexity 1 27 0 300 282 160 26 chr11 26809489 26809645 -123973908 + MIR SINE MIR 86 262 0 215 365 71 8 chr11 26809967 26810093 -123973460 + MIR SINE MIR 19 152 -110 1884 159 0 7 chr11 26810132 26810434 -123973119 + AluJo SINE Alu 1 300 -12 3878 186 37 6 chr11 26810633 26811416 -123972137 - L1MA10 LINE L1 0 6334 5528 780 253 0 0 chr11 26811418 26811592 -123971961 + L1 LINE L1 3990 4163 -1983 314 295 134 0 chr11 26811712 26811824 -123971729 + MER45A DNA AcHobo 28 154 -24 324 248 86 8 chr11 26813432 26813549 -123970004 + MER113 DNA MER1_type? 2 127 -394 609 345 32 21 chr11 26814509 26815002 -123968551 + LTR33 LTR ERVL 1 520 -1 25 0 0 0 chr11 26815018 26815043 -123968510 + AT_rich Low_complexity Low_complexity 1 25 0 355 383 81 10 chr11 26815927 26816225 -123967328 + HERVL LTR ERVL 4680 4998 -656 524 341 91 38 chr11 26816642 26817122 -123966431 + L2 LINE L2 2777 3286 -27 229 268 79 47 chr11 26817174 26817301 -123966252 + MIR SINE MIR 73 203 -59 200 267 86 29 chr11 26817922 26818027 -123965526 - MIR SINE MIR -13 249 139 432 0 0 0 chr11 26818554 26818602 -123964951 + (TG)n Simple_repeat Simple_repeat 2 49 0 381 98 0 0 chr11 26818602 26818653 -123964900 - AluSp/q SINE Alu -24 279 229 605 257 50 54 chr11 26818945 26819206 -123964347 + MIR SINE MIR 2 261 -1 23 54 0 0 chr11 26820398 26820435 -123963118 + AT_rich Low_complexity Low_complexity 1 37 0 23 33 0 0 chr11 26820513 26820543 -123963010 + AT_rich Low_complexity Low_complexity 1 30 0 1590 204 0 0 chr11 26820568 26820853 -123962700 + AluJo SINE Alu 1 285 -27 5574 141 62 3 chr11 26820859 26822658 -123960895 - L1PA13 LINE L1 -107 6056 4140 21 71 0 0 chr11 26822780 26822822 -123960731 + AT_rich Low_complexity Low_complexity 1 42 0 21 36 0 0 chr11 26823139 26823167 -123960386 + AT_rich Low_complexity Low_complexity 1 28 0 36 94 0 0 chr11 26823277 26823383 -123960170 + AT_rich Low_complexity Low_complexity 1 106 0 181 374 22 43 chr11 26823623 26823762 -123959791 - L2 LINE L2 -177 3095 2960 424 281 39 0 chr11 26823941 26824069 -123959484 - MIR SINE MIR -44 218 86 193 333 98 16 chr11 26825090 26825213 -123958340 + L2 LINE L2 2917 3049 -223 2540 70 0 0 chr11 26825306 26825634 -123957919 - L1P4 LINE L1 -393 5775 5448 294 325 74 30 chr11 26826103 26826306 -123957247 + MIR SINE MIR 1 212 -50 2031 244 47 15 chr11 26826505 26827033 -123956520 + MER74B LTR ERVL 1 545 -77 329 0 24 0 chr11 26827102 26827143 -123956410 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 7115 38 25 0 chr11 26827143 26828664 -123954889 - L1PA5 LINE L1 -13 6141 4597 6825 48 106 125 chr11 26828664 26829318 -123954235 + L1P LINE L1 3400 4176 -1970 1149 79 0 0 chr11 26829318 26829470 -123954083 + MER11B LTR ERVK 1085 1236 0 6825 48 106 125 chr11 26829470 26829891 -123953662 + L1P LINE L1 4176 4603 -1543 207 194 32 16 chr11 26830283 26830345 -123953208 + (TA)n Simple_repeat Simple_repeat 1 63 0 1777 208 45 3 chr11 26831334 26831714 -123951839 + MSTD LTR MaLR 1 396 0 195 162 0 0 chr11 26832396 26832433 -123951120 + (CATATA)n Simple_repeat Simple_repeat 6 42 0 914 19 0 0 chr11 26833231 26833338 -123950215 - L1PA4 LINE L1 -3 6152 6046 199 297 161 19 chr11 26833376 26833531 -123950022 + MIR SINE MIR 86 262 0 25 0 0 0 chr11 26833604 26833629 -123949924 + AT_rich Low_complexity Low_complexity 1 25 0 5056 150 2 28 chr11 26834346 26835255 -123948298 + L1PA14 LINE L1 5276 6161 0 2338 102 3 0 chr11 26836593 26836898 -123946655 - AluSx SINE Alu -6 306 1 1148 110 12 0 chr11 26837622 26837786 -123945767 - AluSg/x SINE Alu 0 312 147 2097 165 3 31 chr11 26838330 26838711 -123944842 + MLT1B LTR MaLR 1 370 -20 444 289 97 27 chr11 26841521 26841754 -123941799 - HAL1 LINE L1 -114 2393 2133 2126 126 0 13 chr11 26841754 26842063 -123941490 - AluSx SINE Alu -7 305 1 444 289 97 27 chr11 26842063 26842127 -123941426 - HAL1 LINE L1 -374 2133 2075 30 0 0 0 chr11 26842309 26842339 -123941214 + AT_rich Low_complexity Low_complexity 1 30 0 512 324 99 12 chr11 26842357 26842681 -123940872 - HAL1 LINE L1 -849 1658 1307 22 35 0 0 chr11 26843677 26843706 -123939847 + AT_rich Low_complexity Low_complexity 1 29 0 991 192 0 0 chr11 26843820 26843997 -123939556 - MLT1B LTR MaLR -51 339 163 23 0 0 0 chr11 26844008 26844031 -123939522 + AT_rich Low_complexity Low_complexity 1 23 0 1048 137 0 0 chr11 26844031 26844184 -123939369 - AluSq SINE Alu -27 286 134 2168 86 10 7 chr11 26844184 26844474 -123939079 - AluY SINE Alu -16 295 5 5151 159 40 24 chr11 26844489 26845487 -123938066 - L1MA8 LINE L1 -1 6290 5277 255 248 0 105 chr11 26845848 26845953 -123937600 + L1MC4 LINE L1 6600 6693 -1349 192 40 0 0 chr11 26846417 26846442 -123937111 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 542 248 24 0 chr11 26848076 26848201 -123935352 + MER70A LTR ERVL 345 472 0 311 326 91 15 chr11 26848469 26848601 -123934952 + MIR SINE MIR 60 201 -61 210 395 23 0 chr11 26848622 26848708 -123934845 - MER91B DNA MER1_type -1 189 102 276 30 0 0 chr11 26848709 26848742 -123934811 + (CA)n Simple_repeat Simple_repeat 2 34 0 1481 200 18 146 chr11 26849680 26850181 -123933372 - MER70A LTR ERVL 0 472 36 192 331 101 50 chr11 26850283 26850373 -123933180 - MIR SINE MIR -72 190 89 2373 151 0 3 chr11 26850373 26850737 -123932816 - THE1B LTR MaLR -1 363 1 192 331 101 50 chr11 26850737 26850785 -123932768 - MIR SINE MIR -173 89 45 21 36 0 0 chr11 26850785 26850813 -123932740 + AT_rich Low_complexity Low_complexity 1 28 0 281 393 52 6 chr11 26850881 26851054 -123932499 + L2 LINE L2 2559 2739 -575 282 73 0 0 chr11 26851254 26851295 -123932258 + (TG)n Simple_repeat Simple_repeat 2 42 0 256 113 0 48 chr11 26851496 26851558 -123931995 - LTR66 LTR ERVL -154 456 398 332 232 10 0 chr11 26851559 26851658 -123931895 + (TA)n Simple_repeat Simple_repeat 1 100 0 289 261 0 0 chr11 26851660 26851748 -123931805 - L1MC4 LINE L1 -1340 6702 6615 227 272 0 22 chr11 26851681 26851773 -123931780 + L1MC4 LINE L1 6614 6703 -1339 * 229 315 0 0 chr11 26851763 26851852 -123931701 - L1MC4 LINE L1 -1339 6703 6615 * 247 287 23 0 chr11 26851800 26851887 -123931666 + L1MC4 LINE L1 6615 6703 -1339 * 265 244 23 0 chr11 26851859 26851945 -123931608 - L1MC4 LINE L1 -1339 6703 6616 208 256 0 0 chr11 26851947 26851990 -123931563 + (TATATG)n Simple_repeat Simple_repeat 5 47 0 1437 176 21 58 chr11 26852441 26852771 -123930782 - L1MB1 LINE L1 -7 6161 5844 1192 216 109 41 chr11 26852778 26853116 -123930437 + MLT1A1 LTR MaLR 1 361 -4 1104 194 54 4 chr11 26853120 26853362 -123930191 + MLT1A1-int LTR MaLR 1 254 -1481 7915 176 31 24 chr11 26853542 26854534 -123929019 - L1P LINE L1 -1992 4154 3144 441 0 0 0 chr11 26854534 26854583 -123928970 + (TG)n Simple_repeat Simple_repeat 2 50 0 7915 176 31 24 chr11 26854583 26855250 -123928303 - L1P LINE L1 -3002 3144 2483 6085 142 10 22 chr11 26855248 26857151 -123926402 + L1PA13 LINE L1 4163 6148 -15 * 221 119 24 0 chr11 26858114 26858156 -123925397 + (CA)n Simple_repeat Simple_repeat 2 44 0 190 370 12 0 chr11 26858751 26858832 -123924721 + L2 LINE L2 3227 3308 -5 22 0 0 0 chr11 26859170 26859192 -123924361 + AT_rich Low_complexity Low_complexity 1 22 0 2090 285 70 14 chr11 26860365 26861291 -123922262 - L1M4 LINE L1 -1769 4377 3400 540 333 116 17 chr11 26861327 26861852 -123921701 + L1MEc LINE L1 1689 2265 -4131 397 282 78 33 chr11 26861926 26862171 -123921382 + L1MEc LINE L1 2274 2529 -3686 2977 127 16 14 chr11 26862171 26862292 -123921261 + L1PB3 LINE L1 5659 5778 -376 294 106 0 0 chr11 26862292 26862339 -123921214 + (TG)n Simple_repeat Simple_repeat 2 48 0 2977 127 16 14 chr11 26862339 26862712 -123920841 + L1PB3 LINE L1 5778 6154 0 3525 235 20 5 chr11 26862724 26863568 -123919985 - L1P LINE L1 -1206 4940 4084 5610 151 42 3 chr11 26863629 26864795 -123918758 + L1PA15 LINE L1 4962 6163 -2 40 21 0 0 chr11 26864795 26864842 -123918711 + AT_rich Low_complexity Low_complexity 1 47 0 2189 214 49 44 chr11 26864842 26864997 -123918556 + L1MB7 LINE L1 5328 5481 -703 351 0 0 0 chr11 26864997 26865036 -123918517 + (TTA)n Simple_repeat Simple_repeat 2 40 0 2189 214 49 44 chr11 26865036 26865534 -123918019 + L1MB7 LINE L1 5481 5984 -200 31 26 0 0 chr11 26865849 26865887 -123917666 + AT_rich Low_complexity Low_complexity 1 38 0 194 380 38 0 chr11 26866522 26866601 -123916952 - MIR SINE MIR -23 239 158 24 0 0 0 chr11 26866676 26866700 -123916853 + AT_rich Low_complexity Low_complexity 1 24 0 2030 116 0 20 chr11 26866861 26867154 -123916399 + AluSx SINE Alu 5 291 -21 39 50 0 0 chr11 26867157 26867217 -123916336 + AT_rich Low_complexity Low_complexity 1 60 0 23 0 0 0 chr11 26867857 26867880 -123915673 + AT_rich Low_complexity Low_complexity 1 23 0 1467 295 77 22 chr11 26868007 26868515 -123915038 + MLT2E LTR ERVL 11 546 -82 21 0 0 0 chr11 26868934 26868955 -123914598 + AT_rich Low_complexity Low_complexity 1 21 0 750 323 47 75 chr11 26869129 26869726 -123913827 + MLT1G LTR MaLR 11 590 0 2101 121 48 31 chr11 26870378 26870734 -123912819 - THE1B LTR MaLR 0 364 3 11099 99 13 25 chr11 26870742 26872334 -123911219 - THE1B-int LTR MaLR -7 1573 1 2107 132 48 28 chr11 26872334 26872691 -123910862 - THE1B LTR MaLR 0 364 1 1410 129 10 90 chr11 26873129 26873382 -123910171 - L1PA16 LINE L1 -1 6165 5940 2277 112 0 6 chr11 26873382 26873695 -123909858 - AluSx SINE Alu -1 311 1 1410 129 10 90 chr11 26873695 26873751 -123909802 - L1PA16 LINE L1 -226 5940 5881 1020 284 31 92 chr11 26873962 26874568 -123908985 + MLT1G LTR MaLR 7 575 -15 1633 240 25 8 chr11 26875297 26875655 -123907898 + MLT1A1 LTR MaLR 1 364 -1 310 333 263 21 chr11 26876991 26877424 -123906129 - L2 LINE L2 -338 2976 2439 426 319 146 29 chr11 26880137 26880588 -123902965 + L1ME4a LINE L1 5533 6036 -85 257 221 205 63 chr11 26880938 26881065 -123902488 + L1ME4a LINE L1 5972 6116 -5 2291 146 3 3 chr11 26881098 26881467 -123902086 - MLT1B LTR MaLR -1 389 21 2024 139 73 14 chr11 26881805 26882149 -123901404 + THE1B LTR MaLR 1 364 0 362 349 20 7 chr11 26882152 26882304 -123901249 + MIR SINE MIR 39 192 -70 205 331 99 16 chr11 26883869 26883990 -123899563 + MIR SINE MIR 127 257 -5 192 294 59 0 chr11 26884046 26884097 -123899456 + MIR SINE MIR 47 100 -162 1187 249 40 71 chr11 26884110 26884631 -123898922 + MLT1D LTR MaLR 1 505 0 986 264 111 18 chr11 26884796 26885130 -123898423 + MER92C LTR ERV1 188 552 -2 1727 166 49 30 chr11 26885645 26886013 -123897540 + THE1C LTR MaLR 1 375 0 262 373 77 12 chr11 26886156 26886325 -123897228 + MIR3 SINE MIR 24 203 -5 236 359 0 31 chr11 26888181 26888309 -123895244 + L2 LINE L2 2653 2776 -538 366 245 86 0 chr11 26888358 26888497 -123895056 - MER113 DNA MER1_type? -370 151 1 791 262 39 34 chr11 26889233 26889718 -123893835 + MLT1F1 LTR MaLR 9 559 -8 236 364 0 0 chr11 26889718 26889795 -123893758 + MIR SINE MIR 75 151 -111 1779 155 14 0 chr11 26890120 26890427 -123893126 - AluSx SINE Alu 0 311 1 2069 124 3 0 chr11 26892178 26892476 -123891077 + AluSx SINE Alu 1 299 -13 6214 130 34 49 chr11 26892961 26894124 -123889429 - MER52C LTR ERV1 -132 1146 1 1012 311 31 63 chr11 26894128 26895174 -123888379 + L1PA12 LINE L1 268 2079 -5502 * 6016 254 32 27 chr11 26895172 26895592 -123887961 + L1PA12 LINE L1 2702 3118 -4466 300 91 0 0 chr11 26895592 26895636 -123887917 + (CA)n Simple_repeat Simple_repeat 1 44 0 6016 254 32 27 chr11 26895636 26895657 -123887896 + L1PA12 LINE L1 3118 3137 -4447 1987 121 32 0 chr11 26895657 26895937 -123887616 - AluSc SINE Alu -16 293 5 6016 254 32 27 chr11 26895937 26898052 -123885501 + L1PA12 LINE L1 3137 5270 -2314 10831 215 25 4 chr11 26898245 26899210 -123884343 + L1PA16 LINE L1 2516 3459 -2707 211 70 23 23 chr11 26899210 26899253 -123884300 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 10831 215 25 4 chr11 26899253 26901767 -123881786 + L1PA16 LINE L1 3459 6060 -106 498 47 0 0 chr11 26901768 26901832 -123881721 + L1PA16 LINE L1 6097 6160 -6 306 0 0 0 chr11 26902086 26902120 -123881433 + (CAT)n Simple_repeat Simple_repeat 2 35 0 1987 157 15 15 chr11 26902312 26902649 -123880904 + MER1B DNA MER1_type 1 337 0 24 0 0 0 chr11 26903008 26903032 -123880521 + AT_rich Low_complexity Low_complexity 1 24 0 2251 89 3 13 chr11 26903561 26903864 -123879689 + AluSp SINE Alu 2 301 -12 843 154 15 0 chr11 26904132 26904268 -123879285 - MLT2B2 LTR ERVL -373 142 5 23 0 0 0 chr11 26905821 26905844 -123877709 + AT_rich Low_complexity Low_complexity 1 23 0 258 316 9 70 chr11 26906458 26906572 -123876981 - L2 LINE L2 -10 3262 3156 1858 231 24 26 chr11 26906680 26907135 -123876418 + MLT2B3 LTR ERVL 1 454 -100 408 123 15 0 chr11 26907155 26907220 -123876333 - MLT2A2 LTR ERVL -47 406 341 212 184 0 0 chr11 26907220 26907258 -123876295 + (TA)n Simple_repeat Simple_repeat 1 38 0 432 139 14 0 chr11 26907302 26907374 -123876179 - MLT2A2 LTR ERVL -40 413 341 332 167 14 0 chr11 26907383 26907455 -123876098 + (TA)n Simple_repeat Simple_repeat 2 74 0 266 156 0 0 chr11 26907455 26907500 -123876053 + MLT2A2 LTR ERVL 399 443 -10 7109 38 7 0 chr11 26907627 26908493 -123875060 + L1PA4 LINE L1 5273 6144 -11 272 355 44 14 chr11 26909561 26909755 -123873798 + MIR SINE MIR 13 211 -51 1714 199 94 5 chr11 26910040 26910433 -123873120 + MSTA LTR MaLR 1 428 0 248 183 17 0 chr11 26910636 26910696 -123872857 + (TA)n Simple_repeat Simple_repeat 1 61 0 21 71 0 0 chr11 26910938 26910980 -123872573 + AT_rich Low_complexity Low_complexity 1 42 0 438 95 16 0 chr11 26910980 26911043 -123872510 + L1P4 LINE L1 5726 5789 -377 278 208 0 14 chr11 26911059 26911131 -123872422 - L1 LINE L1 -3049 3097 3027 24 53 0 0 chr11 26911143 26911181 -123872372 + AT_rich Low_complexity Low_complexity 1 38 0 380 175 25 0 chr11 26911185 26911345 -123872208 + (TA)n Simple_repeat Simple_repeat 1 164 0 26 0 0 0 chr11 26911630 26911656 -123871897 + AT_rich Low_complexity Low_complexity 1 26 0 38 68 0 0 chr11 26912538 26912611 -123870942 + AT_rich Low_complexity Low_complexity 1 73 0 206 341 65 32 chr11 26913336 26913459 -123870094 - L2 LINE L2 -23 3290 3164 731 138 8 16 chr11 26913667 26913790 -123869763 + FLAM_C SINE Alu 1 122 -21 1295 57 0 0 chr11 26913794 26913952 -123869601 - AluSp/q SINE Alu 0 313 156 438 200 0 53 chr11 26913988 26914083 -123869470 + AluJb SINE Alu 205 294 -18 23 0 0 0 chr11 26914515 26914538 -123869015 + AT_rich Low_complexity Low_complexity 1 23 0 279 213 142 24 chr11 26914568 26914695 -123868858 + L1M4 LINE L1 2678 2819 -3327 621 183 51 6 chr11 26914709 26914884 -123868669 + L1MA7 LINE L1 6108 6290 -1 343 275 87 54 chr11 26914886 26915006 -123868547 + L1M4 LINE L1 2861 2976 -3170 1915 115 77 16 chr11 26915006 26915329 -123868224 + MER61A LTR ERV1 1 343 0 343 275 87 54 chr11 26915329 26915506 -123868047 + L1M4 LINE L1 2976 3168 -2978 1854 131 0 0 chr11 26915511 26915778 -123867775 + AluSx SINE Alu 1 267 -45 737 209 0 7 chr11 26915778 26915931 -123867622 - MER67D LTR ERV1 -359 155 4 21 71 0 0 chr11 26916809 26916851 -123866702 + AT_rich Low_complexity Low_complexity 1 42 0 302 247 169 26 chr11 26917044 26917198 -123866355 - MIR SINE MIR -20 242 67 5934 77 0 10 chr11 26917198 26917986 -123865567 - LTR17 LTR ERV1 0 780 1 23 78 0 0 chr11 26918068 26918119 -123865434 + AT_rich Low_complexity Low_complexity 1 51 0 3669 190 27 18 chr11 26918185 26919006 -123864547 + L1MA8 LINE L1 5271 6098 -193 287 333 51 58 chr11 26919468 26919606 -123863947 - MIR3 SINE MIR -67 141 5 204 319 0 66 chr11 26920857 26920948 -123862605 - L2 LINE L2 -6 3266 3182 21 36 0 0 chr11 26921129 26921157 -123862396 + AT_rich Low_complexity Low_complexity 1 28 0 187 331 79 24 chr11 26921185 26921312 -123862241 + MIR SINE MIR 73 206 -56 26 74 0 0 chr11 26922647 26922701 -123860852 + AT_rich Low_complexity Low_complexity 1 54 0 2669 132 91 86 chr11 26923315 26923903 -123859650 - MER4B LTR ERV1 0 610 17 180 0 0 0 chr11 26923903 26923923 -123859630 + (TAG)n Simple_repeat Simple_repeat 1 20 0 2669 132 91 86 chr11 26923923 26923941 -123859612 - MER4B LTR ERV1 -593 17 1 4035 147 10 49 chr11 26923969 26924688 -123858865 + LTR8 LTR ERV1 1 691 0 192 341 30 59 chr11 26924694 26924829 -123858724 - MIR SINE MIR -118 144 14 183 100 0 0 chr11 26926148 26926178 -123857375 + (TA)n Simple_repeat Simple_repeat 1 30 0 324 211 0 0 chr11 26927693 26927769 -123855784 + GA-rich Low_complexity Low_complexity 2 77 0 304 364 6 51 chr11 26928069 26928245 -123855308 + MIR SINE MIR 9 180 -28 1164 254 109 26 chr11 26928587 26928605 -123854948 - MER20B DNA MER1_type -55 728 713 1549 236 113 19 chr11 26928605 26929066 -123854487 - MLT1D LTR MaLR -1 504 1 1164 254 109 26 chr11 26929066 26929543 -123854010 - MER20B DNA MER1_type -70 713 192 1285 264 20 60 chr11 26929543 26929874 -123853679 + L1ME1 LINE L1 5523 5825 -341 306 0 0 0 chr11 26929874 26929908 -123853645 + (TG)n Simple_repeat Simple_repeat 1 34 0 1285 264 20 60 chr11 26929908 26930125 -123853428 + L1ME1 LINE L1 5825 6049 -117 665 152 190 0 chr11 26930665 26930823 -123852730 - MER53 DNA DNA -1 188 1 24 32 0 0 chr11 26930914 26930945 -123852608 + AT_rich Low_complexity Low_complexity 1 31 0 453 294 129 111 chr11 26931574 26931914 -123851639 - L2 LINE L2 -1260 2054 1721 1688 169 43 30 chr11 26931914 26932282 -123851271 - THE1C LTR MaLR -2 373 1 453 294 129 111 chr11 26932282 26932321 -123851232 - L2 LINE L2 -1593 1721 1684 1407 193 3 56 chr11 26932321 26932627 -123850926 - AluJb SINE Alu -22 290 1 453 294 129 111 chr11 26932627 26933153 -123850400 - L2 LINE L2 -1630 1684 1132 227 307 102 30 chr11 26933134 26933300 -123850253 + MIR3 SINE MIR 5 182 -26 * 264 122 0 0 chr11 26933375 26933416 -123850137 + (GGGA)n Simple_repeat Simple_repeat 4 44 0 1163 216 7 29 chr11 26934383 26934661 -123848892 - MLT2D LTR ERVL -142 272 1 236 333 0 0 chr11 26935347 26935410 -123848143 + MIR SINE MIR 200 262 0 27 0 0 0 chr11 26935767 26935794 -123847759 + AT_rich Low_complexity Low_complexity 1 27 0 197 65 32 0 chr11 26935874 26935905 -123847648 + (TAAAA)n Simple_repeat Simple_repeat 2 33 0 355 262 98 25 chr11 26937316 26937438 -123846115 - MER5A DNA MER1_type -3 186 56 219 69 0 0 chr11 26937734 26937763 -123845790 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2141 103 0 0 chr11 26938104 26938405 -123845148 - AluSx SINE Alu 0 301 1 299 320 73 27 chr11 26938451 26938601 -123844952 - L2 LINE L2 -1 3312 3156 460 223 71 0 chr11 26938610 26938722 -123844831 - L2 LINE L2 -834 2480 2361 1890 163 152 0 chr11 26939083 26939457 -123844096 - LTR47A LTR ERVL -19 433 3 271 248 29 86 chr11 26939559 26939664 -123843889 + L2 LINE L2 3215 3313 0 1969 42 0 0 chr11 26940484 26940725 -123842828 + L1PA4 LINE L1 5912 6152 -3 276 392 40 0 chr11 26940731 26940856 -123842697 - MER5B DNA MER1_type -48 130 1 21 71 0 0 chr11 26940960 26941002 -123842551 + AT_rich Low_complexity Low_complexity 1 42 0 219 69 0 0 chr11 26941391 26941420 -123842133 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 198 220 237 0 chr11 26943182 26943241 -123840312 + L2 LINE L2 3199 3271 -1 580 344 51 42 chr11 26944552 26945107 -123838446 + L2 LINE L2 2742 3313 0 2297 89 6 10 chr11 26945170 26945483 -123838070 - AluSp SINE Alu -1 312 1 24 0 0 0 chr11 26945672 26945696 -123837857 + AT_rich Low_complexity Low_complexity 1 24 0 1561 165 59 14 chr11 26947007 26947365 -123836188 - L1MA9 LINE L1 0 6312 5939 2462 242 15 5 chr11 26948506 26949102 -123834451 - L1MB8 LINE L1 -88 6090 5489 279 305 85 0 chr11 26949096 26949237 -123834316 - L1MB8 LINE L1 -1927 4219 4067 * 203 282 84 28 chr11 26949794 26949865 -123833688 - L2 LINE L2 -12 3260 3186 2399 170 105 1 chr11 26950569 26951025 -123832528 + MER61D LTR ERV1 1 500 -1 1335 42 0 0 chr11 26951293 26951460 -123832093 - L1PA4 LINE L1 0 6155 5989 1878 204 41 22 chr11 26952094 26952822 -123830731 + LTR39 LTR ERV1 1 783 0 4214 245 71 35 chr11 26953301 26953466 -123830087 - L1MD1 LINE L1 -307 5935 5777 225 0 0 0 chr11 26953466 26953491 -123830062 + (TTCA)n Simple_repeat Simple_repeat 4 28 0 4214 245 71 35 chr11 26953491 26955362 -123828191 - L1MD1 LINE L1 -465 5777 3796 1533 83 28 5 chr11 26955362 26955578 -123827975 - AluY SINE Alu -3 308 88 4214 245 71 35 chr11 26955578 26956082 -123827471 - L1MD1 LINE L1 -2446 3796 3312 2281 113 0 6 chr11 26957228 26957539 -123826014 - AluSx SINE Alu -3 309 1 2556 174 24 2 chr11 26957751 26958206 -123825347 + LTR32 LTR ERVL 7 471 0 728 183 0 0 chr11 26958256 26958382 -123825171 - FLAM_C SINE Alu -10 133 8 849 247 13 26 chr11 26958527 26958754 -123824799 + MER58A DNA MER1_type 1 224 0 237 145 65 32 chr11 26958989 26959051 -123824502 - MLT1F LTR MaLR -212 330 267 369 264 159 50 chr11 26960380 26960539 -123823014 - MIR SINE MIR -15 247 64 1601 181 144 5 chr11 26960539 26960915 -123822638 + MSTA LTR MaLR 1 428 0 369 264 159 50 chr11 26960915 26960937 -123822616 - MIR SINE MIR -198 64 46 330 353 33 20 chr11 26961275 26961425 -123822128 + MIR SINE MIR 41 192 -70 182 342 118 0 chr11 26962103 26962179 -123821374 - L2 LINE L2 -4 3309 3225 203 229 243 0 chr11 26962631 26962701 -123820852 + MIR SINE MIR 68 154 -108 555 298 44 28 chr11 26962740 26962992 -123820561 + MIR SINE MIR 2 257 -5 199 258 16 16 chr11 26963024 26963086 -123820467 + MIR SINE MIR 201 262 0 2065 136 3 7 chr11 26963324 26963634 -123819919 + AluSx SINE Alu 1 309 -3 455 228 89 11 chr11 26963799 26963979 -123819574 - LTR37A LTR ERV1 -9 417 224 1884 148 91 90 chr11 26964049 26964660 -123818893 + MER4D LTR ERV1 1 725 -54 1585 154 103 74 chr11 26964883 26965541 -123818012 + MER4D LTR ERV1 1 770 -9 253 293 120 3 chr11 26965720 26965836 -123817717 - MIR SINE MIR -65 143 28 771 226 75 5 chr11 26965841 26966040 -123817513 + MER20 DNA MER1_type 2 214 -5 636 253 96 92 chr11 26967101 26967393 -123816160 - L2 LINE L2 -619 2695 2403 225 216 93 62 chr11 26968263 26968360 -123815193 - MLT1J LTR MaLR -3 508 409 21 0 0 0 chr11 26968786 26968807 -123814746 + AT_rich Low_complexity Low_complexity 1 21 0 623 316 128 44 chr11 26969006 26969551 -123814002 + MLT1G1 LTR MaLR 3 593 -2 22 0 0 0 chr11 26969908 26969930 -123813623 + AT_rich Low_complexity Low_complexity 1 22 0 3222 274 95 10 chr11 26970514 26972071 -123811482 - L1M4 LINE L1 -1925 4457 2769 1873 152 17 20 chr11 26972227 26972583 -123810970 - THE1A LTR MaLR 0 355 1 6181 131 19 0 chr11 26972583 26973482 -123810071 - THE1A-int LTR MaLR 0 1580 665 2206 68 0 0 chr11 26973557 26973836 -123809717 + HERV17 LTR ERV1 1674 1952 -6674 17488 66 4 4 chr11 26974029 26978119 -123805434 + HERV17 LTR ERV1 1537 7357 -1269 329 280 27 0 chr11 26978093 26978168 -123805385 + LTR17 LTR ERV1 704 780 0 * 345 291 136 38 chr11 26978173 26978489 -123805064 - L1M4 LINE L1 -4010 2374 2028 1565 123 34 27 chr11 26978564 26978856 -123804697 - L1MA5 LINE L1 -1 6299 6006 632 150 38 23 chr11 26979197 26979330 -123804223 + L1MA4A LINE L1 6164 6298 -5 180 0 0 0 chr11 26979745 26979765 -123803788 + (TG)n Simple_repeat Simple_repeat 2 21 0 190 122 20 20 chr11 26979765 26979814 -123803739 + (TA)n Simple_repeat Simple_repeat 2 50 0 785 284 57 3 chr11 26980312 26980647 -123802906 - L1M4 LINE L1 -2940 3206 2854 1079 257 91 18 chr11 26980648 26981033 -123802520 + MLT1C LTR MaLR 3 415 -52 190 269 64 64 chr11 26981485 26981563 -123801990 + L2 LINE L2 2412 2489 -825 382 248 96 8 chr11 26982197 26982322 -123801231 - L1MB1 LINE L1 -358 5831 5696 2483 182 12 14 chr11 26982530 26983040 -123800513 + L1MA10 LINE L1 5813 6321 -13 523 111 49 5 chr11 26983047 26983258 -123800295 + (TA)n Simple_repeat Simple_repeat 1 220 0 927 149 7 7 chr11 26983258 26983406 -123800147 - AluJb SINE Alu -164 148 1 24 67 0 0 chr11 26983406 26983451 -123800102 + AT_rich Low_complexity Low_complexity 1 45 0 230 331 48 48 chr11 26983552 26983697 -123799856 - MIR SINE MIR -113 149 5 1442 234 50 39 chr11 26984033 26984396 -123799157 + LTR39 LTR ERV1 417 783 0 245 299 28 56 chr11 26984528 26984635 -123798918 - MIR SINE MIR -140 122 19 1346 226 42 0 chr11 26984801 26985088 -123798465 - MER58B DNA MER1_type -1 340 42 594 233 0 0 chr11 26985491 26985624 -123797929 + L1MB1 LINE L1 6029 6161 -7 609 264 93 16 chr11 26985740 26985922 -123797631 + MER63A DNA MER1_type 6 201 -9 199 325 38 25 chr11 26985929 26986009 -123797544 + MIR SINE MIR 64 144 -64 227 331 185 16 chr11 26986188 26986372 -123797181 + MIR SINE MIR 48 262 0 301 312 50 18 chr11 26986605 26986731 -123796822 - MIR SINE MIR -65 143 19 416 291 0 0 chr11 26987900 26988017 -123795536 + L1ME3A LINE L1 6028 6144 -26 560 167 0 0 chr11 26988073 26988169 -123795384 + L1MB3 LINE L1 6074 6169 -14 409 298 172 5 chr11 26988647 26988845 -123794708 + MIR SINE MIR 32 262 0 942 63 79 0 chr11 26989488 26989615 -123793938 + MER85 DNA T2_type 1 137 -2 1798 161 26 9 chr11 26990478 26990820 -123792733 - L1MA9 LINE L1 0 6312 5965 3484 176 33 20 chr11 26990826 26991037 -123792516 + L1MA9 LINE L1 4776 4983 -1329 2372 67 6 10 chr11 26991037 26991349 -123792204 + AluY SINE Alu 1 311 0 3484 176 33 20 chr11 26991349 26992300 -123791253 + L1MA9 LINE L1 4983 5959 -353 225 297 22 55 chr11 26992655 26992746 -123790807 - MER5A DNA MER1_type -6 183 96 * 413 371 70 41 chr11 26992726 26993216 -123790337 + L2 LINE L2 2752 3259 -13 25 0 0 0 chr11 26993739 26993764 -123789789 + AT_rich Low_complexity Low_complexity 1 25 0 1233 178 97 39 chr11 26993944 26994253 -123789300 - MER45B DNA AcHobo 0 1040 714 1253 317 80 43 chr11 26994399 26994963 -123788590 - MER45C DNA AcHobo -833 120 27 5057 30 0 0 chr11 26995657 26996250 -123787303 + L1PA3 LINE L1 5558 6150 -5 304 342 26 0 chr11 26996259 26996373 -123787180 - L2 LINE L2 -813 2501 2385 1165 197 55 93 chr11 26996376 26996797 -123786756 + LTR7 LTR ERV1 1 405 -45 207 167 0 0 chr11 26996854 26996890 -123786663 + GA-rich Low_complexity Low_complexity 2 37 0 234 337 50 50 chr11 26997889 26998070 -123785483 - MIR3 SINE MIR -9 199 19 2815 208 60 32 chr11 26998222 26998962 -123784591 - L1MD1 LINE L1 -8 6234 5475 342 210 118 8 chr11 26998956 26999075 -123784478 - L1MA4 LINE L1 -3 6297 6166 * 282 212 79 30 chr11 26999154 26999319 -123784234 + (TATATG)n Simple_repeat Simple_repeat 2 174 0 288 194 30 0 chr11 26999326 26999393 -123784160 - MLT1D LTR MaLR 0 626 558 4558 139 25 45 chr11 26999395 26999891 -123783662 - L1PB4 LINE L1 -2 6154 5650 1828 131 45 3 chr11 26999891 27000182 -123783371 + AluSg SINE Alu 5 307 -3 4558 139 25 45 chr11 27000182 27000195 -123783358 - L1PB4 LINE L1 -506 5650 5638 646 202 8 0 chr11 27000195 27000314 -123783239 - FLAM_C SINE Alu -13 120 1 4558 139 25 45 chr11 27000314 27000630 -123782923 - L1PB4 LINE L1 -518 5638 5344 947 253 21 22 chr11 27000630 27000997 -123782556 - MLT1D LTR MaLR -71 388 1 259 223 43 64 chr11 27001094 27001188 -123782365 + L2 LINE L2 3222 3313 0 198 406 9 19 chr11 27001653 27001759 -123781794 - MIR SINE MIR -136 126 22 495 366 63 12 chr11 27002530 27002784 -123780769 + L2 LINE L2 3000 3266 -6 218 313 0 73 chr11 27002788 27002884 -123780669 - MIR SINE MIR -146 116 28 202 258 15 76 chr11 27003488 27003554 -123779999 - L2 LINE L2 -14 3299 3238 34 0 0 0 chr11 27004837 27004871 -123778682 + AT_rich Low_complexity Low_complexity 1 34 0 906 281 138 17 chr11 27005545 27005901 -123777652 + LTR40a LTR ERVL 2 400 -119 189 349 64 37 chr11 27006303 27006412 -123777141 - L2 LINE L2 -22 3250 3139 29 0 0 0 chr11 27007036 27007065 -123776488 + AT_rich Low_complexity Low_complexity 1 29 0 1150 169 169 43 chr11 27007698 27007999 -123775554 + MER2 DNA MER2_type 7 345 0 581 185 23 15 chr11 27008270 27008400 -123775153 - Charlie3 DNA MER1_type -33 2677 2547 603 297 33 26 chr11 27009070 27009373 -123774180 - L1PA12 LINE L1 -7276 305 1 198 368 108 11 chr11 27009696 27009881 -123773672 - MIR SINE MIR 0 262 60 216 0 0 0 chr11 27013037 27013061 -123770492 + (TAAA)n Simple_repeat Simple_repeat 3 26 0 22 35 0 0 chr11 27013123 27013152 -123770401 + AT_rich Low_complexity Low_complexity 1 29 0 1902 304 64 50 chr11 27014136 27014448 -123769105 + L2 LINE L2 1986 2292 -1021 1172 289 68 36 chr11 27014448 27015084 -123768469 + MLT2F LTR ERVL 5 660 -3 1902 304 64 50 chr11 27015084 27016088 -123767465 + L2 LINE L2 2292 3312 -1 9372 150 14 27 chr11 27016283 27016426 -123767127 + Tigger1 DNA MER2_type 357 500 -1918 1456 219 3 0 chr11 27016426 27016709 -123766844 + AluJo SINE Alu 7 290 -22 9372 150 14 27 chr11 27016709 27018186 -123765367 + Tigger1 DNA MER2_type 500 1955 -463 1890 166 102 5 chr11 27018187 27018561 -123764992 - MSTA LTR MaLR 0 428 19 1568 165 80 15 chr11 27018564 27018891 -123764662 + Tigger1 DNA MER2_type 1966 2313 -105 279 122 0 0 chr11 27018895 27018936 -123764617 - MSTA LTR MaLR -2 426 386 779 201 0 0 chr11 27018998 27019137 -123764416 + Tigger1 DNA MER2_type 2280 2418 0 5181 147 18 16 chr11 27019414 27020315 -123763238 - MER4D LTR ERV1 0 903 1 2212 95 0 46 chr11 27021133 27021458 -123762095 - AluSg SINE Alu 0 310 1 3811 146 10 60 chr11 27021500 27022228 -123761325 + LTR8 LTR ERV1 1 691 0 21 0 0 0 chr11 27022307 27022328 -123761225 + AT_rich Low_complexity Low_complexity 1 21 0 2120 122 0 0 chr11 27022745 27023032 -123760521 + AluSg SINE Alu 1 287 -23 375 43 123 7 chr11 27023034 27023172 -123760381 + (TA)n Simple_repeat Simple_repeat 1 154 0 202 88 0 88 chr11 27023273 27023330 -123760223 + (TATAA)n Simple_repeat Simple_repeat 1 52 0 498 86 21 81 chr11 27023335 27023521 -123760032 + (TTATA)n Simple_repeat Simple_repeat 1 175 0 23 68 0 0 chr11 27023521 27023565 -123759988 + AT_rich Low_complexity Low_complexity 1 44 0 577 92 78 6 chr11 27023571 27023899 -123759654 + (TA)n Simple_repeat Simple_repeat 1 351 0 1181 205 77 25 chr11 27024007 27025053 -123758500 - L1M1 LINE L1 -743 5639 4648 444 37 0 0 chr11 27025053 27025107 -123758446 + (TG)n Simple_repeat Simple_repeat 1 54 0 1181 205 77 25 chr11 27025107 27027302 -123756251 - L1M1 LINE L1 -1734 4648 2140 338 162 59 0 chr11 27027699 27027767 -123755786 + LTR16C LTR ERVL 420 491 0 315 352 115 16 chr11 27028255 27028437 -123755116 - MIR SINE MIR -34 228 29 228 292 67 50 chr11 27028629 27028749 -123754804 + MIR SINE MIR 91 212 -50 1426 213 60 24 chr11 27030222 27030648 -123752905 + MER89 LTR ERV1 19 559 0 187 279 118 93 chr11 27030854 27031015 -123752538 - MIR SINE MIR -67 195 31 678 259 139 5 chr11 27031042 27031258 -123752295 + MIR SINE MIR 2 246 -16 668 178 32 80 chr11 27032728 27032897 -123750656 + MER4C LTR ERV1 2 178 -287 2157 103 0 0 chr11 27032897 27033212 -123750341 + AluSg SINE Alu 1 315 0 668 178 32 80 chr11 27033212 27033676 -123749877 + MER4C LTR ERV1 178 463 -2 2937 91 31 0 chr11 27033895 27034313 -123749240 - MER57B LTR ERV1 -3 431 1 1018 235 153 31 chr11 27034586 27034939 -123748614 + MSTD LTR MaLR 1 396 0 518 283 112 19 chr11 27035127 27035332 -123748221 - MIR SINE MIR -30 232 9 1344 239 107 67 chr11 27036049 27036631 -123746922 + MER21B LTR ERV1 126 730 -133 325 346 20 0 chr11 27036796 27036949 -123746604 + MARNA DNA Mariner 228 383 -203 221 278 99 73 chr11 27037395 27037462 -123746091 + MIR SINE MIR 67 131 -131 1811 174 0 7 chr11 27037462 27037750 -123745803 + AluJb SINE Alu 5 290 -22 221 278 99 73 chr11 27037750 27037873 -123745680 + MIR SINE MIR 131 262 0 485 287 81 34 chr11 27040252 27040461 -123743092 + MIR SINE MIR 31 249 -13 665 186 9 0 chr11 27041814 27041927 -123741626 + MLT1A1 LTR MaLR 1 114 -251 222 264 33 0 chr11 27042357 27042448 -123741105 + (TA)n Simple_repeat Simple_repeat 1 94 0 717 288 233 14 chr11 27042504 27042921 -123740632 - L2 LINE L2 -455 2859 2352 280 272 117 19 chr11 27043435 27043538 -123740015 - MIR SINE MIR -34 228 116 27 29 0 0 chr11 27044532 27044566 -123738987 + AT_rich Low_complexity Low_complexity 1 34 0 233 246 98 0 chr11 27044908 27044969 -123738584 + MIR3 SINE MIR 104 170 -38 31 88 0 0 chr11 27045330 27045410 -123738143 + AT_rich Low_complexity Low_complexity 1 80 0 1067 144 0 28 chr11 27045786 27045966 -123737587 + AluSx SINE Alu 1 175 -137 241 250 0 0 chr11 27046067 27046115 -123737438 + polypurine Low_complexity Low_complexity 3 50 0 1119 156 120 0 chr11 27046115 27046307 -123737246 - MER4E LTR ERV1 -9 770 556 359 316 37 0 chr11 27046649 27046785 -123736768 + MIR SINE MIR 22 162 -100 22 35 0 0 chr11 27047396 27047425 -123736128 + AT_rich Low_complexity Low_complexity 1 29 0 279 0 0 0 chr11 27049014 27049045 -123734508 + (A)n Simple_repeat Simple_repeat 1 31 0 258 246 212 17 chr11 27049981 27050099 -123733454 - L2 LINE L2 -1 3312 3172 246 65 0 194 chr11 27050114 27050144 -123733409 + MADE1 DNA Mariner 1 15 -65 3143 91 31 0 chr11 27050144 27050595 -123732958 + L1PA8 LINE L1 5707 6171 -1 246 65 0 194 chr11 27050595 27050626 -123732927 + MADE1 DNA Mariner 15 50 -30 927 169 55 0 chr11 27050628 27050811 -123732742 - Tigger7 DNA MER2_type -177 2310 2118 3502 215 38 4 chr11 27050814 27051544 -123732009 - Tigger7 DNA MER2_type -1720 767 13 358 307 26 0 chr11 27051585 27051699 -123731854 - MLT2E LTR ERVL -502 126 10 511 315 86 0 chr11 27051708 27051905 -123731648 - L2 LINE L2 -1014 2300 2087 3273 125 17 2 chr11 27053399 27053921 -123729632 - MER51C LTR ERV1 -125 515 1 1500 251 82 95 chr11 27053957 27055159 -123728394 + L1MC4a LINE L1 5555 6741 -1067 1698 240 112 53 chr11 27055188 27055782 -123727771 - MER50 LTR ERV1 -19 715 77 2286 72 7 10 chr11 27055782 27056088 -123727465 - AluY SINE Alu -6 305 1 1698 240 112 53 chr11 27056088 27056156 -123727397 - MER50 LTR ERV1 -657 77 14 1418 256 105 58 chr11 27056162 27056968 -123726585 + L1MC4 LINE L1 6823 7675 -367 2443 43 3 30 chr11 27056968 27057267 -123726286 + AluY SINE Alu 1 291 -20 1418 256 105 58 chr11 27057267 27057339 -123726214 + L1MC4 LINE L1 7675 7742 -300 328 241 72 0 chr11 27057345 27057428 -123726125 - L1MC4 LINE L1 -1339 6703 6615 884 136 7 19 chr11 27057429 27057584 -123725969 + LTR8A LTR ERV1 10 162 -565 228 81 0 27 chr11 27057584 27057621 -123725932 + Charlie3 DNA MER1_type 1 36 -2674 326 268 32 49 chr11 27057781 27057904 -123725649 + L1MC4 LINE L1 7922 8042 0 4878 150 19 33 chr11 27058527 27059445 -123724108 - L1PA16 LINE L1 -2 6164 5260 597 166 222 0 chr11 27059995 27060200 -123723353 - L1M4 LINE L1 -708 5470 5224 333 330 165 9 chr11 27061390 27061614 -123721939 - MIR SINE MIR -3 259 1 310 332 115 25 chr11 27061767 27062131 -123721422 - L2 LINE L2 -2 3311 2915 257 305 37 68 chr11 27062516 27062706 -123720847 + L2 LINE L2 3098 3281 -32 297 0 0 0 chr11 27062717 27062750 -123720803 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 25 0 0 0 chr11 27063773 27063798 -123719755 + AT_rich Low_complexity Low_complexity 1 25 0 1803 158 10 3 chr11 27064287 27064578 -123718975 + AluSx SINE Alu 1 293 -19 304 309 20 33 chr11 27064814 27064966 -123718587 - MIR SINE MIR -37 225 76 1626 208 85 105 chr11 27065289 27065841 -123717712 + MER67A LTR ERV1 1 541 -2 308 385 18 35 chr11 27066339 27066508 -123717045 + MIR SINE MIR 17 182 -80 43076 42 3 2 chr11 27066510 27072644 -123710909 + L1PA3 LINE L1 13 6155 0 9006 60 2 0 chr11 27122859 27124037 -123659516 - L1P LINE L1 -2815 3331 2151 516 366 15 26 chr11 27124139 27124412 -123659141 + L2 LINE L2 2608 2877 -437 7593 28 0 2 chr11 27124529 27125704 -123657849 + L1PA4 LINE L1 4983 6155 0 336 345 73 6 chr11 27128888 27129053 -123654500 - L3 LINE CR1 -10 1567 1392 21 57 0 0 chr11 27129053 27129088 -123654465 + AT_rich Low_complexity Low_complexity 1 35 0 216 286 57 0 chr11 27129122 27129192 -123654361 - L3 LINE CR1 -320 1257 1184 249 33 0 0 chr11 27129192 27129222 -123654331 + (TG)n Simple_repeat Simple_repeat 1 30 0 456 354 35 9 chr11 27129735 27129964 -123653589 - MIR SINE MIR -19 243 9 2058 197 13 3 chr11 27130455 27130841 -123652712 - MSTB-int LTR MaLR -1261 390 1 2246 186 9 32 chr11 27130841 27131277 -123652276 - MSTB LTR MaLR 0 426 1 22 0 0 0 chr11 27132233 27132255 -123651298 + AT_rich Low_complexity Low_complexity 1 22 0 1819 194 53 10 chr11 27132505 27132999 -123650554 - MER69 DNA AcHobo -13 2513 1999 471 356 21 5 chr11 27132995 27133183 -123650370 - MER69 DNA AcHobo -1969 557 367 * 312 143 20 0 chr11 27133210 27133259 -123650294 - L2 LINE L2 -560 2754 2705 24 53 0 0 chr11 27133588 27133626 -123649927 + AT_rich Low_complexity Low_complexity 1 38 0 2202 183 27 27 chr11 27134096 27134582 -123648971 - L1MB3 LINE L1 -4 6179 5694 267 260 120 20 chr11 27135018 27135118 -123648435 - MER117 DNA MER1_type -45 152 43 529 311 80 9 chr11 27135569 27135794 -123647759 - HERV16 LTR ERVL -4755 241 1 619 257 98 86 chr11 27135826 27136164 -123647389 - LTR16A LTR ERVL -32 418 77 214 267 0 0 chr11 27136667 27136712 -123646841 + MIR SINE MIR 64 108 -100 2058 110 4 0 chr11 27137840 27138113 -123645440 + AluSx SINE Alu 1 274 -38 207 360 0 0 chr11 27139046 27139096 -123644457 - MIR SINE MIR -6 256 207 1790 241 98 51 chr11 27139980 27140624 -123642929 + MER76 LTR ERV 1 674 -14 232 214 18 18 chr11 27140672 27140728 -123642825 + MIR SINE MIR 20 75 -187 1505 149 34 47 chr11 27140742 27141038 -123642515 + MLT1B LTR MaLR 2 293 -97 204 386 63 0 chr11 27141601 27141728 -123641825 - L2 LINE L2 0 3272 3138 505 204 0 0 chr11 27142957 27143045 -123640508 + Tigger2 DNA MER2_type 400 487 -2231 1538 115 0 5 chr11 27143149 27143358 -123640195 - AluSg SINE Alu -98 212 5 568 303 48 21 chr11 27143765 27144010 -123639543 + MIR SINE MIR 14 261 -1 396 332 78 30 chr11 27144361 27144695 -123638858 + MLT1K LTR MaLR 194 543 -45 6806 71 7 11 chr11 27144697 27145121 -123638432 + L1PA8 LINE L1 4870 5294 -878 2557 45 3 3 chr11 27145121 27145429 -123638124 + AluY SINE Alu 1 308 -3 6806 71 7 11 chr11 27145429 27146308 -123637245 + L1PA8 LINE L1 5294 6170 -2 1143 228 71 77 chr11 27146926 27147365 -123636188 - MLT2B1 LTR ERVL 0 520 85 2115 256 47 104 chr11 27147469 27148506 -123635047 - L2 LINE L2 -1197 2117 1140 413 131 12 0 chr11 27148521 27148605 -123634948 + (CA)n Simple_repeat Simple_repeat 1 85 0 213 132 0 0 chr11 27148670 27148708 -123634845 + (TC)n Simple_repeat Simple_repeat 1 38 0 228 276 58 11 chr11 27148730 27148817 -123634736 - L2 LINE L2 -1187 2127 2037 296 276 92 0 chr11 27148831 27148929 -123634624 - MIR3 SINE MIR -9 199 93 2327 110 0 0 chr11 27149167 27149476 -123634077 - AluSg SINE Alu -1 309 1 274 349 29 16 chr11 27149579 27149709 -123633844 + MIR3 SINE MIR 28 160 -48 2186 123 0 0 chr11 27150541 27150849 -123632704 + AluSc SINE Alu 1 308 -1 5628 136 20 3 chr11 27151148 27152036 -123631517 + L1PA16 LINE L1 5255 6157 -9 2023 115 17 3 chr11 27152051 27152339 -123631214 - AluSc SINE Alu -17 292 1 249 202 48 12 chr11 27152939 27153023 -123630530 - L1MC/D LINE L1 -1926 5882 5796 282 240 80 57 chr11 27153048 27153223 -123630330 - L1MC/D LINE L1 -377 5744 5566 3664 133 64 15 chr11 27153458 27154111 -123629442 + Tigger2 DNA MER2_type 657 1341 -1377 4547 148 4 25 chr11 27154265 27154848 -123628705 + Tigger2 DNA MER2_type 1341 1906 -812 369 0 0 0 chr11 27154848 27154889 -123628664 + (CA)n Simple_repeat Simple_repeat 2 42 0 4547 148 4 25 chr11 27154889 27155076 -123628477 + Tigger2 DNA MER2_type 1906 2095 -623 25 114 0 0 chr11 27155400 27155523 -123628030 + AT_rich Low_complexity Low_complexity 1 123 0 307 336 8 25 chr11 27155648 27155767 -123627786 + MLT1I LTR MaLR 278 394 -15 27 29 0 0 chr11 27156008 27156042 -123627511 + AT_rich Low_complexity Low_complexity 1 34 0 32 43 0 0 chr11 27156150 27156196 -123627357 + AT_rich Low_complexity Low_complexity 1 46 0 214 273 23 34 chr11 27156845 27156933 -123626620 + L3 LINE CR1 1274 1360 -217 319 376 44 17 chr11 27157060 27157241 -123626312 + MIR SINE MIR 28 213 -49 354 344 27 38 chr11 27157426 27157612 -123625941 - MER5B DNA MER1_type -5 173 1 221 405 66 21 chr11 27158634 27158892 -123624661 + L2 LINE L2 2717 2982 -290 228 343 0 15 chr11 27159394 27159461 -123624092 + MLT1K LTR MaLR 161 226 -362 425 321 63 51 chr11 27159824 27160061 -123623492 + LTR16C LTR ERVL 247 486 -5 204 135 0 0 chr11 27160068 27160105 -123623448 + (TG)n Simple_repeat Simple_repeat 2 38 0 186 333 23 11 chr11 27160264 27160351 -123623202 - L2 LINE L2 -633 2681 2594 25 31 0 0 chr11 27160483 27160515 -123623038 + AT_rich Low_complexity Low_complexity 1 32 0 811 182 41 0 chr11 27160641 27160811 -123622742 + L1M4 LINE L1 5227 5403 -743 1209 253 20 83 chr11 27160816 27161275 -123622278 - L1M4 LINE L1 -6105 437 8 298 157 29 14 chr11 27161280 27161350 -123622203 - L1MC4a LINE L1 -79 7729 7659 * 461 284 62 25 chr11 27161348 27161510 -123622043 - L1MD2 LINE L1 -214 6145 5978 2749 161 43 6 chr11 27161847 27162339 -123621214 - MER41E LTR ERV1 -2 510 1 217 127 0 55 chr11 27162473 27162528 -123621025 + (TTCC)n Simple_repeat Simple_repeat 1 52 0 1913 122 10 3 chr11 27162528 27162816 -123620737 - AluSc SINE Alu -19 290 1 740 189 110 63 chr11 27163174 27163428 -123620125 + L1MA10 LINE L1 6057 6322 -12 771 271 99 84 chr11 27163498 27164496 -123619057 - HAL1 LINE L1 -79 2428 1404 2381 102 0 0 chr11 27164496 27164809 -123618744 - AluSq SINE Alu 0 313 1 771 271 99 84 chr11 27164809 27165107 -123618446 - HAL1 LINE L1 -1103 1404 1112 2261 258 71 28 chr11 27165207 27165559 -123617994 - L1ME1 LINE L1 -30 6634 6298 1840 197 78 27 chr11 27165559 27166036 -123617517 - MLT1D LTR MaLR 0 505 5 2261 258 71 28 chr11 27166036 27167120 -123616433 - L1ME1 LINE L1 -366 6298 5127 2407 77 0 0 chr11 27167120 27167419 -123616134 - AluSc SINE Alu -10 299 1 2261 258 71 28 chr11 27167419 27167506 -123616047 - L1ME1 LINE L1 -1537 5127 5045 404 305 86 30 chr11 27167544 27167741 -123615812 - L1ME1 LINE L1 -4871 1671 1464 2314 269 69 52 chr11 27167741 27168766 -123614787 - L1ME1 LINE L1 -5238 1587 545 216 0 0 0 chr11 27168826 27168850 -123614703 + (TG)n Simple_repeat Simple_repeat 2 25 0 207 257 35 9 chr11 27168857 27168970 -123614583 + (TA)n Simple_repeat Simple_repeat 1 116 0 466 305 69 17 chr11 27169177 27169351 -123614202 - LTR16B LTR ERVL -279 185 3 677 314 0 0 chr11 27169430 27169599 -123613954 - MIR SINE MIR -27 235 67 22 56 0 0 chr11 27170071 27170107 -123613446 + AT_rich Low_complexity Low_complexity 1 36 0 1257 231 94 24 chr11 27171112 27171665 -123611888 - MER69 DNA AcHobo -3 2523 1932 411 38 0 0 chr11 27171696 27171749 -123611804 + (TA)n Simple_repeat Simple_repeat 2 54 0 264 339 197 3 chr11 27172059 27172348 -123611205 - L2 LINE L2 0 3313 2969 344 299 160 24 chr11 27172398 27172773 -123610780 - L2 LINE L2 -435 2879 2454 304 331 41 0 chr11 27172831 27172952 -123610601 - MIR SINE MIR -74 188 63 2287 53 3 23 chr11 27173000 27173302 -123610251 + AluY SINE Alu 1 296 -15 480 280 73 13 chr11 27174730 27174880 -123608673 + MER5B DNA MER1_type 1 159 -19 409 256 181 23 chr11 27174935 27175068 -123608485 - MER5A DNA MER1_type -6 183 30 250 329 73 0 chr11 27175544 27175626 -123607927 + L2 LINE L2 3149 3236 -36 1096 258 19 16 chr11 27175680 27175936 -123607617 - MIR SINE MIR 0 262 6 700 226 5 85 chr11 27175935 27176134 -123607419 - MIR SINE MIR -75 187 5 * 356 287 93 0 chr11 27177395 27177503 -123606050 - L2 LINE L2 -3 3310 3193 208 361 84 42 chr11 27177596 27177809 -123605744 + MIR SINE MIR 26 247 -15 410 168 35 0 chr11 27177889 27178002 -123605551 + (TA)n Simple_repeat Simple_repeat 1 117 0 10636 97 7 22 chr11 27178109 27179683 -123603870 - L1P LINE L1 -3980 2166 617 690 111 10 0 chr11 27179674 27179773 -123603780 - L1P LINE L1 -6045 101 2 * 393 22 0 0 chr11 27180248 27180294 -123603259 + (TA)n Simple_repeat Simple_repeat 2 47 0 242 241 69 23 chr11 27180378 27180465 -123603088 - MIR3 SINE MIR -13 195 105 300 232 40 72 chr11 27180506 27180631 -123602922 - MIR SINE MIR -52 210 90 363 182 0 0 chr11 27181120 27181208 -123602345 - L1MA8 LINE L1 0 6291 6204 194 309 100 27 chr11 27181258 27181368 -123602185 - MIR SINE MIR -109 153 36 22 0 0 0 chr11 27182207 27182229 -123601324 + AT_rich Low_complexity Low_complexity 1 22 0 1843 184 51 8 chr11 27182792 27183166 -123600387 + MLT1B LTR MaLR 1 390 0 531 319 162 11 chr11 27184098 27184449 -123599104 - LTR33A LTR ERVL -4 519 116 1287 207 69 46 chr11 27184780 27184974 -123598579 - MLT1A1 LTR MaLR 0 365 177 189 0 0 0 chr11 27184974 27184995 -123598558 + (TC)n Simple_repeat Simple_repeat 2 22 0 189 0 0 0 chr11 27184994 27185015 -123598538 + (TG)n Simple_repeat Simple_repeat 2 22 0 1287 207 69 46 chr11 27184995 27185168 -123598385 - MLT1A1 LTR MaLR -188 177 10 241 327 79 10 chr11 27187305 27187406 -123596147 + MIR SINE MIR 84 191 -71 2003 97 10 68 chr11 27188061 27188369 -123595184 - AluSc SINE Alu -19 290 1 209 304 0 43 chr11 27189314 27189383 -123594170 + L2 LINE L2 3246 3311 -2 21 0 0 0 chr11 27190206 27190227 -123593326 + AT_rich Low_complexity Low_complexity 1 21 0 195 184 0 0 chr11 27190548 27190586 -123592967 + (CATA)n Simple_repeat Simple_repeat 3 40 0 862 275 15 0 chr11 27190716 27190916 -123592637 - MER20 DNA MER1_type -15 204 2 2220 75 0 14 chr11 27192165 27192457 -123591096 + AluSg SINE Alu 13 300 -10 492 345 42 29 chr11 27192721 27193103 -123590450 + L1MC4 LINE L1 4771 5157 -989 24 24 0 24 chr11 27193167 27193194 -123590359 + AT_rich Low_complexity Low_complexity 1 28 -13 2219 119 37 3 chr11 27193194 27193546 -123590007 - THE1B LTR MaLR 0 364 1 24 24 0 24 chr11 27193546 27193560 -123589993 + AT_rich Low_complexity Low_complexity 28 41 0 836 273 80 51 chr11 27193565 27193703 -123589850 + L1MC4 LINE L1 5265 5398 -2410 225 0 0 0 chr11 27193703 27193728 -123589825 + (TA)n Simple_repeat Simple_repeat 2 26 0 836 273 80 51 chr11 27193728 27193978 -123589575 + L1MC4 LINE L1 5398 5664 -2144 1807 259 114 2 chr11 27193997 27194576 -123588977 + LTR48B LTR ERV1 1 644 0 1343 300 55 25 chr11 27194629 27195163 -123588390 + L1MC4 LINE L1 7044 7608 -434 423 0 0 0 chr11 27195163 27195210 -123588343 + (CA)n Simple_repeat Simple_repeat 1 47 0 1343 300 55 25 chr11 27195210 27195419 -123588134 + L1MC4 LINE L1 7608 7809 -233 191 395 13 0 chr11 27195789 27195865 -123587688 - MIR SINE MIR -180 82 6 283 297 35 15 chr11 27195868 27195955 -123587598 - MER5A DNA MER1_type -57 132 34 2047 134 10 0 chr11 27196038 27196345 -123587208 - AluSg SINE Alu 0 310 1 263 130 19 0 chr11 27196865 27196919 -123586634 + GA-rich Low_complexity Low_complexity 2 56 0 467 348 12 6 chr11 27197066 27197230 -123586323 + MER5A DNA MER1_type 10 174 -15 269 330 102 30 chr11 27197355 27197552 -123586001 - MIR SINE MIR -41 221 11 600 284 12 12 chr11 27198292 27198454 -123585099 + MIR SINE MIR 7 168 -94 25 51 0 0 chr11 27198481 27198520 -123585033 + AT_rich Low_complexity Low_complexity 1 39 0 2233 113 27 43 chr11 27198886 27199256 -123584297 - THE1B LTR MaLR 0 364 1 26 50 0 0 chr11 27199298 27199338 -123584215 + AT_rich Low_complexity Low_complexity 1 40 0 543 346 69 4 chr11 27199952 27200183 -123583370 - MIR SINE MIR 0 262 17 583 302 143 24 chr11 27200406 27200784 -123582769 - L2 LINE L2 -2 3311 2889 23 33 0 0 chr11 27201026 27201056 -123582497 + AT_rich Low_complexity Low_complexity 1 30 0 59 46 0 0 chr11 27201119 27201206 -123582347 + AT_rich Low_complexity Low_complexity 1 87 0 389 261 77 68 chr11 27201416 27201623 -123581930 + L2 LINE L2 3082 3290 -23 201 74 0 0 chr11 27201631 27201658 -123581895 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 31 0 0 0 chr11 27202756 27202787 -123580766 + AT_rich Low_complexity Low_complexity 1 31 0 2525 53 0 0 chr11 27203346 27203650 -123579903 - AluY SINE Alu -7 304 1 23 54 0 0 chr11 27203713 27203750 -123579803 + AT_rich Low_complexity Low_complexity 1 37 0 735 274 61 45 chr11 27203821 27204131 -123579422 + L1MC4a LINE L1 5536 5850 -1958 780 213 105 62 chr11 27204166 27204490 -123579063 + L1MC4a LINE L1 5930 6267 -1541 21 0 0 0 chr11 27205078 27205099 -123578454 + AT_rich Low_complexity Low_complexity 1 21 0 2255 39 0 68 chr11 27205365 27205675 -123577878 - AluY SINE Alu -22 289 1 1490 166 135 0 chr11 27205821 27206080 -123577473 + AluJb SINE Alu 4 297 -15 2068 128 7 0 chr11 27206475 27206764 -123576789 + AluSq SINE Alu 1 291 -22 1900 113 0 60 chr11 27206820 27207165 -123576388 + AluSq SINE Alu 1 327 0 468 333 31 6 chr11 27207600 27207762 -123575791 + MIR3 SINE MIR 38 203 -5 200 316 26 128 chr11 27208044 27208161 -123575392 - L2 LINE L2 -31 3241 3137 325 284 52 103 chr11 27208208 27208402 -123575151 - MIR SINE MIR -8 254 71 297 287 46 76 chr11 27210574 27210811 -123572742 - MIR SINE MIR -13 249 20 7009 53 18 0 chr11 27211259 27212269 -123571284 - L1PA5 LINE L1 -8 6146 5127 2218 119 0 6 chr11 27212806 27213117 -123570436 + AluSc SINE Alu 1 309 0 246 32 0 0 chr11 27213269 27213300 -123570253 + (TATAA)n Simple_repeat Simple_repeat 2 32 0 435 356 25 6 chr11 27213638 27213801 -123569752 + MIR SINE MIR 28 193 -69 317 342 20 34 chr11 27215761 27215910 -123567643 - MIR SINE MIR -115 147 1 3053 96 46 4 chr11 27217618 27218076 -123565477 - L1PA13 LINE L1 -3 6160 5684 340 333 48 0 chr11 27218633 27218759 -123564794 - MIR SINE MIR -111 151 20 1428 316 51 8 chr11 27218878 27219368 -123564185 - LTR33 LTR ERVL -10 511 1 305 331 26 74 chr11 27219931 27220200 -123563353 + L2 LINE L2 3056 3311 -2 276 308 39 19 chr11 27220234 27220338 -123563215 - L2 LINE L2 -4 3309 3204 2174 143 41 0 chr11 27220434 27220777 -123562776 + MSTA LTR MaLR 72 428 0 32 67 0 0 chr11 27222044 27222104 -123561449 + AT_rich Low_complexity Low_complexity 1 60 0 431 263 34 51 chr11 27222127 27222302 -123561251 + MER66A LTR ERV1 298 469 -9 706 241 20 15 chr11 27222306 27222505 -123561048 - L1ME2 LINE L1 -282 5882 5683 1875 111 4 4 chr11 27223042 27223313 -123560240 + AluSc SINE Alu 39 309 0 342 91 0 0 chr11 27224624 27224679 -123558874 + (CA)n Simple_repeat Simple_repeat 1 55 0 5382 90 0 0 chr11 27224958 27225693 -123557860 - L1PA8 LINE L1 0 6172 5438 22 35 0 0 chr11 27226140 27226169 -123557384 + AT_rich Low_complexity Low_complexity 1 29 0 327 49 0 0 chr11 27226893 27226934 -123556619 + (CA)n Simple_repeat Simple_repeat 1 41 0 290 308 124 24 chr11 27227377 27227546 -123556007 - MIR SINE MIR -1 261 76 653 315 119 3 chr11 27228904 27229215 -123554338 - L3 LINE CR1 -102 1475 1129 186 287 45 104 chr11 27229371 27229573 -123553980 + L2 LINE L2 3107 3296 -17 228 366 20 10 chr11 27229636 27229737 -123553816 - L3 LINE CR1 -854 723 622 256 247 67 56 chr11 27230380 27230469 -123553084 - L2 LINE L2 -3 3310 3221 348 302 34 20 chr11 27231874 27232023 -123551530 + MIR SINE MIR 91 241 -21 230 384 20 20 chr11 27233093 27233244 -123550309 + MIR3 SINE MIR 49 199 -9 2574 69 3 3 chr11 27233276 27233624 -123549929 - L1PA13 LINE L1 0 6163 5816 1804 141 49 30 chr11 27234884 27235252 -123548301 + THE1C LTR MaLR 1 375 0 2138 192 41 3 chr11 27235674 27236064 -123547489 + MER47B DNA MER2_type 4 408 -10 259 326 30 37 chr11 27236098 27236233 -123547320 - MIR3 SINE MIR -41 167 34 266 190 0 155 chr11 27236725 27236841 -123546712 + MLT1J1 LTR MaLR 60 157 -289 250 62 62 0 chr11 27237038 27237086 -123546467 + CT-rich Low_complexity Low_complexity 1 51 0 27 0 0 0 chr11 27237199 27237226 -123546327 + AT_rich Low_complexity Low_complexity 1 27 0 1384 154 194 4 chr11 27237805 27238084 -123545469 - MER1B DNA MER1_type -3 336 5 2122 129 3 0 chr11 27238485 27238794 -123544759 - AluSg SINE Alu 0 310 1 228 411 0 0 chr11 27240399 27240550 -123543003 - MER117 DNA MER1_type -3 194 44 219 358 84 0 chr11 27241147 27241242 -123542311 + L2 LINE L2 3205 3307 -6 227 318 34 11 chr11 27241495 27241583 -123541970 - MIR SINE MIR -61 147 58 1413 230 49 11 chr11 27241655 27242020 -123541533 - MLT1B LTR MaLR -11 379 1 2348 173 14 7 chr11 27242770 27243191 -123540362 - MSTA LTR MaLR -4 424 1 5573 211 16 7 chr11 27243191 27244288 -123539265 - MSTA-int LTR MaLR 0 1651 546 441 0 0 0 chr11 27244305 27244354 -123539199 + (TA)n Simple_repeat Simple_repeat 1 49 0 7125 41 0 0 chr11 27244354 27245261 -123538292 - L1PA5 LINE L1 -7 6147 5222 2197 67 0 3 chr11 27245261 27245558 -123537995 + L1P LINE L1 4795 5090 -1056 321 98 0 20 chr11 27245556 27245607 -123537946 - MSTA-int LTR MaLR -1116 535 486 * 2021 161 19 0 chr11 27245612 27245973 -123537580 - MSTA-int LTR MaLR -1283 368 1 2136 170 16 56 chr11 27245973 27246419 -123537134 - MSTA LTR MaLR 0 428 1 215 245 11 0 chr11 27246907 27247001 -123536552 + GA-rich Low_complexity Low_complexity 1 95 0 204 97 0 0 chr11 27247015 27247046 -123536507 + (TG)n Simple_repeat Simple_repeat 1 31 0 26 50 0 0 chr11 27247223 27247263 -123536290 + AT_rich Low_complexity Low_complexity 1 40 0 205 255 0 0 chr11 27247480 27247527 -123536026 + (TG)n Simple_repeat Simple_repeat 2 48 0 281 159 0 29 chr11 27247718 27247787 -123535766 + CT-rich Low_complexity Low_complexity 3 69 0 2183 135 47 16 chr11 27248434 27248798 -123534755 + THE1C LTR MaLR 1 375 0 9001 135 36 44 chr11 27248798 27250390 -123533163 + THE1C-int LTR MaLR 1 1580 0 2519 102 19 16 chr11 27250390 27250764 -123532789 + THE1C LTR MaLR 1 375 0 315 331 75 47 chr11 27250943 27251197 -123532356 - L2 LINE L2 -1 3312 3052 2045 164 16 26 chr11 27251534 27251913 -123531640 + THE1C LTR MaLR 1 375 0 250 386 55 14 chr11 27251918 27252063 -123531490 + MIR SINE MIR 19 169 -93 26 30 0 0 chr11 27252116 27252149 -123531404 + AT_rich Low_complexity Low_complexity 1 33 0 2028 124 69 44 chr11 27253018 27253096 -123530457 - MER1A DNA MER1_type -2218 484 409 180 0 0 0 chr11 27253096 27253116 -123530437 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 2010 134 0 0 chr11 27253120 27253395 -123530158 - AluSx SINE Alu -37 275 1 2028 124 69 44 chr11 27253395 27253738 -123529815 - MER1A DNA MER1_type -2295 407 5 1078 212 13 0 chr11 27255025 27255261 -123528292 - Tigger6 DNA MER2_type -1358 239 1 550 274 98 20 chr11 27255384 27256326 -123527227 + L1MEd LINE L1 532 1546 -4583 415 83 42 10 chr11 27256709 27256805 -123526748 + (TCTA)n Simple_repeat Simple_repeat 4 102 0 750 331 48 30 chr11 27257567 27257851 -123525702 - L2 LINE L2 -461 2853 2557 1639 183 7 36 chr11 27257851 27258152 -123525401 + AluJb SINE Alu 1 292 -20 750 331 48 30 chr11 27258152 27258302 -123525251 - L2 LINE L2 -757 2557 2411 313 239 0 0 chr11 27258532 27258603 -123524950 + MIR SINE MIR 192 262 0 1582 178 128 3 chr11 27258723 27259044 -123524509 - MLT1A1 LTR MaLR -4 361 1 2297 98 0 0 chr11 27259066 27259361 -123524192 + AluSx SINE Alu 16 310 -2 230 272 248 52 chr11 27259710 27260000 -123523553 + L2 LINE L2 2967 3313 0 254 250 0 42 chr11 27260429 27260525 -123523028 + L1MC4 LINE L1 6614 6705 -1337 201 176 0 0 chr11 27260525 27260559 -123522994 + (TA)n Simple_repeat Simple_repeat 2 35 0 441 0 0 0 chr11 27260731 27260780 -123522773 + (CA)n Simple_repeat Simple_repeat 1 49 0 1066 230 85 48 chr11 27261035 27261387 -123522166 + MLT1A1 LTR MaLR 1 365 0 224 333 68 26 chr11 27261565 27261682 -123521871 - MER5A DNA MER1_type -11 178 57 423 0 0 0 chr11 27262476 27262523 -123521030 + (CA)n Simple_repeat Simple_repeat 2 48 0 1178 311 61 28 chr11 27263239 27264025 -123519528 - L2 LINE L2 0 3313 2497 783 246 34 79 chr11 27264125 27264503 -123519050 + L1MC5 LINE L1 7183 7543 -418 1980 102 7 0 chr11 27264584 27264878 -123518675 - L1PA13 LINE L1 -5 6158 5863 3477 126 42 6 chr11 27264878 27265493 -123518060 + L1PA13 LINE L1 5204 5837 -331 1510 174 0 8 chr11 27265619 27265861 -123517692 - AluSx SINE Alu -69 243 4 240 236 0 28 chr11 27266541 27266613 -123516940 + (TATATG)n Simple_repeat Simple_repeat 4 73 0 201 147 0 0 chr11 27266721 27266755 -123516798 + (TA)n Simple_repeat Simple_repeat 2 35 0 202 0 29 57 chr11 27267319 27267354 -123516199 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 232 330 9 43 chr11 27268452 27268567 -123514986 + L2 LINE L2 2945 3055 -217 27 0 0 0 chr11 27268877 27268904 -123514649 + AT_rich Low_complexity Low_complexity 1 27 0 1683 141 0 0 chr11 27269613 27269896 -123513657 + L1MA5A LINE L1 6013 6295 -2 6893 60 12 0 chr11 27270504 27271833 -123511720 - L1PA7 LINE L1 -3 6151 4820 3402 99 0 4 chr11 27271834 27272337 -123511216 + L1PA7 LINE L1 4308 4808 -1338 2224 113 7 0 chr11 27272581 27272891 -123510662 + AluSq SINE Alu 1 312 -1 186 316 18 18 chr11 27274344 27274401 -123509152 - L3b LINE CR1 -5 1578 1522 266 268 186 0 chr11 27274542 27274639 -123508914 - MIR SINE MIR -102 160 46 25 0 0 0 chr11 27275192 27275217 -123508336 + AT_rich Low_complexity Low_complexity 1 25 0 1769 188 54 47 chr11 27275979 27276404 -123507149 + MSTC LTR MaLR 1 428 0 22 0 0 0 chr11 27277561 27277583 -123505970 + AT_rich Low_complexity Low_complexity 1 22 0 222 91 0 0 chr11 27277997 27278030 -123505523 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 581 238 81 23 chr11 27278064 27278236 -123505317 - MIR SINE MIR -80 182 1 390 293 43 21 chr11 27278769 27278957 -123504596 + MIR SINE MIR 71 262 0 22 0 0 0 chr11 27279133 27279155 -123504398 + AT_rich Low_complexity Low_complexity 1 22 0 256 232 30 36 chr11 27279288 27279456 -123504097 + A-rich Low_complexity Low_complexity 6 172 0 549 296 72 45 chr11 27279614 27280131 -123503422 + L1MEd LINE L1 564 1094 -5025 915 130 0 0 chr11 27280185 27280316 -123503237 + AluSg SINE Alu 1 131 -179 207 69 0 0 chr11 27280353 27280382 -123503171 + (TC)n Simple_repeat Simple_repeat 2 30 0 2356 245 138 42 chr11 27280414 27281552 -123502001 - L1MC4 LINE L1 -144 7898 6652 303 28 0 0 chr11 27281605 27281641 -123501912 + (TG)n Simple_repeat Simple_repeat 1 36 0 1483 213 33 53 chr11 27281683 27282146 -123501407 + MLT1D LTR MaLR 6 505 0 380 283 0 0 chr11 27282167 27282273 -123501280 - L1MC4 LINE L1 -1477 6565 6460 444 321 30 46 chr11 27282660 27282922 -123500631 - L2 LINE L2 -628 2686 2429 256 275 117 59 chr11 27282926 27283148 -123500405 - HAL1 LINE L1 -2125 382 148 21 0 0 0 chr11 27283206 27283227 -123500326 + AT_rich Low_complexity Low_complexity 1 21 0 2326 96 0 13 chr11 27283257 27283571 -123499982 + AluSg SINE Alu 1 310 0 191 260 0 0 chr11 27283585 27283635 -123499918 + MIR SINE MIR 213 262 0 663 108 0 0 chr11 27283778 27283880 -123499673 + (TCTA)n Simple_repeat Simple_repeat 2 103 0 6586 73 31 1 chr11 27284252 27285123 -123498430 - MER11D LTR ERVK 0 897 1 456 254 0 33 chr11 27285123 27285245 -123498308 - MER94 DNA DNA -16 118 1 7177 44 7 0 chr11 27285431 27286397 -123497156 + L1PA7 LINE L1 5178 6149 -5 234 328 60 45 chr11 27286417 27286551 -123497002 - MIR3 SINE MIR -63 145 10 1572 192 36 0 chr11 27287119 27287278 -123496275 - AluJb SINE Alu -21 291 116 255 61 0 0 chr11 27287278 27287311 -123496242 + (TTA)n Simple_repeat Simple_repeat 2 34 0 1572 192 36 0 chr11 27287311 27287432 -123496121 - AluJb SINE Alu -196 116 1 29 94 0 0 chr11 27287908 27287993 -123495560 + AT_rich Low_complexity Low_complexity 1 85 0 1326 278 152 35 chr11 27287993 27288539 -123495014 - MLT2E LTR ERVL -8 620 11 388 328 66 22 chr11 27288699 27289084 -123494469 - L1M4 LINE L1 -3602 2544 2125 238 293 104 0 chr11 27289768 27289874 -123493679 - HAL1 LINE L1 -909 1598 1482 3428 173 128 98 chr11 27290339 27290910 -123492643 - L1MC3 LINE L1 0 7785 7232 283 304 22 0 chr11 27290910 27291002 -123492551 - MLT1F1 LTR MaLR -436 131 38 3428 173 128 98 chr11 27291002 27291427 -123492126 - L1MC3 LINE L1 -553 7232 6666 2738 251 95 19 chr11 27291823 27292726 -123490827 + L1M4 LINE L1 16 987 -5555 921 201 33 16 chr11 27292730 27292914 -123490639 - MLT2D LTR ERVL 0 414 228 417 276 29 53 chr11 27292925 27293134 -123490419 + ERVL LTR ERVL 193 376 -5278 356 321 33 27 chr11 27293979 27294163 -123489390 - MIR3 SINE MIR -14 194 10 349 191 96 32 chr11 27294332 27294426 -123489127 + MER94 DNA DNA 1 100 -34 209 266 13 51 chr11 27295290 27295369 -123488184 - L2 LINE L2 -3 3310 3235 667 159 56 0 chr11 27295823 27295949 -123487604 - L1MA10 LINE L1 -3 6331 6199 297 0 0 0 chr11 27297429 27297462 -123486091 + (CA)n Simple_repeat Simple_repeat 2 34 0 180 0 0 0 chr11 27297461 27297481 -123486072 + (GA)n Simple_repeat Simple_repeat 2 21 0 * 1303 49 12 0 chr11 27297946 27298108 -123485445 - AluY SINE Alu -12 299 136 201 289 19 0 chr11 27298422 27298474 -123485079 + MIR SINE MIR 90 142 -66 236 250 0 0 chr11 27298637 27298689 -123484864 + MLT1H1 LTR MaLR 1 52 -503 349 223 93 45 chr11 27298711 27298878 -123484675 + MLT1G LTR MaLR 357 590 0 1567 77 64 4 chr11 27299242 27299476 -123484077 + L1PA11 LINE L1 5917 6164 -10 24 0 0 0 chr11 27299477 27299501 -123484052 + AT_rich Low_complexity Low_complexity 1 24 0 259 315 41 6 chr11 27299522 27299684 -123483869 + MIR SINE MIR 82 192 -17 25 0 0 0 chr11 27300576 27300601 -123482952 + AT_rich Low_complexity Low_complexity 1 25 0 2399 71 0 3 chr11 27301417 27301714 -123481839 - AluY SINE Alu -15 296 1 201 373 59 0 chr11 27301730 27301832 -123481721 + L3 LINE CR1 1452 1559 -18 213 340 82 0 chr11 27302650 27302747 -123480806 + MIR SINE MIR 47 151 -111 190 224 52 35 chr11 27303380 27303438 -123480115 + MIR SINE MIR 201 259 -3 1930 114 4 0 chr11 27305820 27306082 -123477471 + AluSx SINE Alu 35 297 -15 196 240 331 0 chr11 27306118 27306239 -123477314 + MIR SINE MIR 20 180 -82 5816 76 64 5 chr11 27306311 27307091 -123476462 + LTR12 LTR ERV1 1 826 0 315 335 53 29 chr11 27307113 27307283 -123476270 - MIR SINE MIR -61 201 28 2305 76 10 3 chr11 27307285 27307587 -123475966 - AluSq SINE Alu -9 304 1 325 147 53 40 chr11 27308320 27308395 -123475158 + MADE1 DNA Mariner 5 80 0 411 241 33 50 chr11 27308595 27308747 -123474806 + MER5A DNA MER1_type 29 177 -1 235 213 28 28 chr11 27309173 27309281 -123474272 + CT-rich Low_complexity Low_complexity 4 111 0 1915 219 85 43 chr11 27309697 27310227 -123473326 - MLT2B3 LTR ERVL 0 554 3 223 299 26 0 chr11 27310229 27310306 -123473247 - MIR SINE MIR -126 136 58 1089 193 43 128 chr11 27310396 27310795 -123472758 + MLT1A1 LTR MaLR 1 365 0 2134 159 56 5 chr11 27310973 27311387 -123472166 - L1MA9 LINE L1 -1 6311 5877 1467 174 32 11 chr11 27311397 27311679 -123471874 - L1MA9 LINE L1 -525 5787 5500 202 325 40 66 chr11 27311797 27311948 -123471605 + MIR SINE MIR 6 152 -110 2358 62 3 3 chr11 27312501 27312793 -123470760 - AluY SINE Alu -15 296 5 831 172 8 0 chr11 27313435 27313593 -123469960 + AluSg/x SINE Alu 147 305 0 454 309 111 14 chr11 27313788 27313995 -123469558 - MIR SINE MIR -25 237 11 405 352 77 0 chr11 27314035 27314217 -123469336 - MIR SINE MIR -18 244 49 292 297 27 0 chr11 27314685 27314759 -123468794 - L2 LINE L2 -9 3304 3229 348 333 103 23 chr11 27315125 27315299 -123468254 + MIR SINE MIR 53 240 -22 205 300 200 18 chr11 27316721 27316831 -123466722 - L2 LINE L2 0 3272 3143 2566 52 0 0 chr11 27317556 27317866 -123465687 - AluY SINE Alu -1 310 1 221 269 0 30 chr11 27318043 27318110 -123465443 + GA-rich Low_complexity Low_complexity 1 65 0 399 329 98 31 chr11 27318735 27319021 -123464532 - HAL1b LINE L1 -793 555 251 31 44 0 0 chr11 27319410 27319455 -123464098 + AT_rich Low_complexity Low_complexity 1 45 0 1651 170 25 0 chr11 27319593 27319870 -123463683 - MER57A LTR ERV1 -119 284 1 39 0 0 0 chr11 27320381 27320420 -123463133 + AT_rich Low_complexity Low_complexity 1 39 0 2983 142 43 6 chr11 27320917 27321409 -123462144 - MER41E LTR ERV1 -2 510 1 487 258 16 11 chr11 27371501 27371683 -123411870 + HERV17 LTR ERV1 1180 1362 -7264 252 0 0 0 chr11 27371849 27371877 -123411676 + (A)n Simple_repeat Simple_repeat 1 28 0 17013 60 3 0 chr11 27371882 27374088 -123409465 + HERV17 LTR ERV1 1543 3754 -4872 13580 60 0 1 chr11 27374067 27375812 -123407741 + HERV17 LTR ERV1 5405 7147 -1479 * 304 26 0 0 chr11 27375808 27375847 -123407706 + HERV17 LTR ERV1 7510 7548 -1078 * 2235 39 0 4 chr11 27375837 27376117 -123407436 + HERV17 LTR ERV1 8335 8613 -13 257 268 116 63 chr11 27376117 27376130 -123407423 + MIR SINE MIR 34 45 -217 5291 109 14 9 chr11 27376130 27376906 -123406647 + LTR17 LTR ERV1 1 780 0 257 268 116 63 chr11 27376906 27377104 -123406449 + MIR SINE MIR 45 256 -6 1122 174 65 140 chr11 27377413 27377906 -123405647 + L1MB7 LINE L1 5729 6184 0 358 258 58 26 chr11 27379125 27379280 -123404273 + L1ME2 LINE L1 5995 6154 -10 22 0 0 0 chr11 27379288 27379310 -123404243 + AT_rich Low_complexity Low_complexity 1 22 0 1757 154 68 0 chr11 27379379 27379659 -123403894 - AluSx SINE Alu -13 299 1 2457 65 7 3 chr11 27380533 27380843 -123402710 + AluY SINE Alu 1 311 0 265 130 0 0 chr11 27380948 27380994 -123402559 + AluSc SINE Alu 252 297 -2 616 254 8 0 chr11 27381104 27381230 -123402323 + MER5B DNA MER1_type 43 169 -9 339 275 144 25 chr11 27381506 27381643 -123401910 - MIR SINE MIR -61 147 17 221 278 42 14 chr11 27382287 27382359 -123401194 - L2 LINE L2 -2933 381 308 199 308 19 67 chr11 27382532 27382636 -123400917 - MIR3 SINE MIR -7 201 103 204 245 0 38 chr11 27382750 27382803 -123400750 + L2 LINE L2 3222 3272 0 1980 100 4 0 chr11 27382908 27383202 -123400351 + AluSx SINE Alu 21 315 0 209 272 105 78 chr11 27384422 27384613 -123398940 + L2 LINE L2 3118 3313 0 266 219 62 21 chr11 27384615 27384711 -123398842 - L1ME4a LINE L1 -58 6063 5964 2336 110 3 0 chr11 27385623 27385932 -123397621 - AluSx SINE Alu -2 310 1 321 287 73 40 chr11 27386062 27386212 -123397341 - MIR SINE MIR -6 256 102 897 315 75 71 chr11 27386892 27387372 -123396181 + MER69 DNA AcHobo 2010 2491 -35 230 342 18 9 chr11 27387408 27387519 -123396034 - MIR SINE MIR -30 232 121 2821 306 151 23 chr11 27388578 27389768 -123393785 + L2 LINE L2 7 1407 -1907 2076 109 22 22 chr11 27389768 27390081 -123393472 - AluSq SINE Alu 0 313 1 2821 306 151 23 chr11 27390081 27390303 -123393250 + L2 LINE L2 1407 1599 -1715 776 272 32 51 chr11 27390496 27390812 -123392741 - L2 LINE L2 0 3313 3004 180 174 0 65 chr11 27390821 27390867 -123392686 - L2 LINE L2 0 3313 3271 340 347 55 15 chr11 27390991 27391241 -123392312 - MIR SINE MIR -1 261 4 954 246 199 21 chr11 27391651 27392089 -123391464 - Charlie2 DNA MER1_type 0 2862 2503 24 67 0 0 chr11 27392089 27392134 -123391419 + AT_rich Low_complexity Low_complexity 1 45 0 954 246 199 21 chr11 27392134 27392419 -123391134 - Charlie2 DNA MER1_type -359 2503 1958 195 186 0 0 chr11 27392436 27392479 -123391074 + (TATG)n Simple_repeat Simple_repeat 2 44 0 185 105 0 26 chr11 27395347 27395385 -123388168 + (TC)n Simple_repeat Simple_repeat 2 38 0 26 74 0 0 chr11 27397188 27397242 -123386311 + AT_rich Low_complexity Low_complexity 1 54 0 491 236 35 80 chr11 27398966 27399165 -123384388 + MIR SINE MIR 22 211 -51 875 260 143 29 chr11 27399244 27399657 -123383896 - L1ME3A LINE L1 -32 6138 5677 469 238 92 37 chr11 27400177 27400341 -123383212 + MIR SINE MIR 34 206 -56 355 256 0 0 chr11 27402579 27402661 -123380892 + L1MC4 LINE L1 6614 6695 -1347 313 333 0 0 chr11 27402589 27402679 -123380874 - L1MC4 LINE L1 -1339 6703 6614 * 333 0 0 0 chr11 27403931 27403968 -123379585 + (CA)n Simple_repeat Simple_repeat 2 38 0 26 30 0 0 chr11 27404056 27404089 -123379464 + AT_rich Low_complexity Low_complexity 1 33 0 23 33 0 0 chr11 27405719 27405749 -123377804 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr11 27406023 27406044 -123377509 + AT_rich Low_complexity Low_complexity 1 21 0 360 0 0 0 chr11 27407487 27407527 -123376026 + (TG)n Simple_repeat Simple_repeat 2 41 0 24 53 0 0 chr11 27409792 27409830 -123373723 + AT_rich Low_complexity Low_complexity 1 38 0 2469 57 0 0 chr11 27409885 27410183 -123373370 - AluY SINE Alu -13 298 1 504 269 67 13 chr11 27410722 27410871 -123372682 + MER5A DNA MER1_type 12 168 -21 760 272 42 8 chr11 27412377 27412616 -123370937 + L1MEc LINE L1 35 281 -6115 2036 258 42 23 chr11 27412734 27413429 -123370124 + L1ME1 LINE L1 5455 6162 -4 715 277 6 0 chr11 27413462 27413621 -123369932 - MER5B DNA MER1_type 0 178 19 277 333 93 22 chr11 27415199 27415382 -123368171 - MIR SINE MIR -56 206 11 3925 169 30 8 chr11 27416370 27417116 -123366437 + L1MB1 LINE L1 5405 6166 -2 40 87 0 0 chr11 27417119 27417222 -123366331 + AT_rich Low_complexity Low_complexity 1 103 0 219 274 84 32 chr11 27417255 27417350 -123366203 + MIR SINE MIR 49 148 -114 232 146 56 0 chr11 27419825 27419914 -123363639 + (TA)n Simple_repeat Simple_repeat 1 94 0 1685 106 0 4 chr11 27419916 27420143 -123363410 - AluSg/x SINE Alu -17 295 70 2059 117 0 39 chr11 27420237 27420545 -123363008 - AluSx SINE Alu -14 298 3 229 301 60 8 chr11 27420584 27420717 -123362836 - L1M4 LINE L1 -3630 2516 2377 23 33 0 0 chr11 27421037 27421067 -123362486 + AT_rich Low_complexity Low_complexity 1 30 0 321 347 116 14 chr11 27421102 27421448 -123362105 + L1 LINE L1 3094 3474 -2672 2212 105 3 0 chr11 27422514 27422810 -123360743 + AluSp SINE Alu 1 297 -16 207 0 0 0 chr11 27423024 27423047 -123360506 + (TAGA)n Simple_repeat Simple_repeat 1 23 0 182 138 0 0 chr11 27423449 27423478 -123360075 + L3 LINE CR1 1454 1482 -95 406 300 93 0 chr11 27423654 27423794 -123359759 + MLT1H1 LTR MaLR 403 555 0 369 0 0 0 chr11 27424588 27424629 -123358924 + (CA)n Simple_repeat Simple_repeat 1 41 0 247 280 65 11 chr11 27424989 27425082 -123358471 - MIR SINE MIR -53 209 112 247 189 14 14 chr11 27425086 27425160 -123358393 + GA-rich Low_complexity Low_complexity 5 78 0 292 336 8 52 chr11 27425329 27425463 -123358090 - MIR SINE MIR -133 129 2 481 289 102 16 chr11 27425470 27425785 -123357768 + HAL1 LINE L1 995 1336 -1171 484 288 78 79 chr11 27425795 27426190 -123357363 + LTR16B LTR ERVL 12 441 -9 2104 247 91 76 chr11 27426201 27427219 -123356334 + HAL1 LINE L1 1334 2372 -135 2226 82 0 13 chr11 27427219 27427522 -123356031 + AluY SINE Alu 1 299 -12 2104 247 91 76 chr11 27427522 27427659 -123355894 + HAL1 LINE L1 2372 2506 -1 212 244 23 47 chr11 27428137 27428223 -123355330 + (TATATG)n Simple_repeat Simple_repeat 5 88 0 262 299 155 10 chr11 27428246 27428343 -123355210 - MIR SINE MIR -103 159 49 2434 59 7 0 chr11 27428358 27428665 -123354888 + AluY SINE Alu 1 309 -2 28 0 0 0 chr11 27428665 27428693 -123354860 + AT_rich Low_complexity Low_complexity 1 28 0 195 297 0 68 chr11 27429488 27429562 -123353991 - L2 LINE L2 0 3313 3245 484 268 109 33 chr11 27429599 27429782 -123353771 - MIR SINE MIR -32 230 34 1268 206 48 38 chr11 27429825 27430117 -123353436 - AluJb SINE Alu -17 295 1 785 321 41 57 chr11 27430654 27431220 -123352333 - L2 LINE L2 0 3313 2758 29 73 0 12 chr11 27431901 27431934 -123351619 + AT_rich Low_complexity Low_complexity 1 33 -48 209 95 0 24 chr11 27431934 27431976 -123351577 + (TTTAA)n Simple_repeat Simple_repeat 5 45 0 29 73 0 12 chr11 27431976 27432024 -123351529 + AT_rich Low_complexity Low_complexity 33 81 0 21 36 0 0 chr11 27432226 27432254 -123351299 + AT_rich Low_complexity Low_complexity 1 28 0 1941 138 30 3 chr11 27432677 27432981 -123350572 + AluSx SINE Alu 1 312 0 24 32 0 0 chr11 27433308 27433339 -123350214 + AT_rich Low_complexity Low_complexity 1 31 0 340 389 39 56 chr11 27433554 27434173 -123349380 - L2 LINE L2 -221 3051 2442 2295 105 0 0 chr11 27435372 27435678 -123347875 + AluSg SINE Alu 1 306 -4 432 134 0 0 chr11 27436075 27436142 -123347411 + MADE1 DNA Mariner 13 79 -1 286 306 134 25 chr11 27436836 27436993 -123346560 - MIR SINE MIR -69 193 20 189 0 0 0 chr11 27437027 27437048 -123346505 + (TA)n Simple_repeat Simple_repeat 2 22 0 1317 325 63 25 chr11 27437455 27438086 -123345467 + L1MA6 LINE L1 399 1433 -6133 5431 238 38 13 chr11 27438613 27441684 -123341869 + L1MA6 LINE L1 2097 4949 -2616 2638 156 46 42 chr11 27441682 27442232 -123341321 + L1MA6 LINE L1 6341 6905 -814 * 2277 91 3 0 chr11 27442232 27442529 -123341024 + AluSp SINE Alu 1 298 -15 2638 156 46 42 chr11 27442529 27442828 -123340725 + L1MA6 LINE L1 6905 7201 -518 473 120 0 43 chr11 27442828 27442920 -123340633 + L1P3 LINE L1 1 88 -5787 20480 145 36 51 chr11 27443120 27448294 -123335259 + L1P3 LINE L1 72 5228 -1233 1357 185 45 6 chr11 27448315 27448628 -123334925 + L1MA6 LINE L1 7394 7718 -1 421 318 76 38 chr11 27448830 27449041 -123334512 - L1ME4a LINE L1 -269 5852 5634 26 30 0 0 chr11 27449359 27449392 -123334161 + AT_rich Low_complexity Low_complexity 1 33 0 507 168 1 65 chr11 27449560 27449681 -123333872 + L1MA6 LINE L1 5966 6091 -209 1373 180 25 101 chr11 27449682 27449998 -123333555 - AluJo SINE Alu -20 292 1 299 296 24 64 chr11 27450733 27450858 -123332695 - MER91B DNA MER1_type -60 130 11 282 296 80 11 chr11 27451307 27451395 -123332158 + MIR SINE MIR 95 188 -74 579 219 10 20 chr11 27451771 27452041 -123331512 + GA-rich Low_complexity Low_complexity 1 267 0 1035 111 11 11 chr11 27452043 27452223 -123331330 + (GGAGA)n Simple_repeat Simple_repeat 1 180 0 40 21 0 0 chr11 27454168 27454215 -123329338 + AT_rich Low_complexity Low_complexity 1 47 0 3848 93 4 4 chr11 27454777 27455302 -123328251 + LTR17 LTR ERV1 256 780 0 5013 72 10 22 chr11 27455324 27455995 -123327558 + HERV17 LTR ERV1 22 684 -7942 6115 76 12 39 chr11 27456162 27457057 -123326496 + HERV17 LTR ERV1 732 1602 -7024 287 338 230 0 chr11 27457449 27457597 -123325956 - MER91A DNA MER1_type 0 196 15 22 35 0 0 chr11 27459651 27459680 -123323873 + AT_rich Low_complexity Low_complexity 1 29 0 1993 149 31 23 chr11 27459827 27460216 -123323337 - L1MA8 LINE L1 -18 6273 5882 204 40 0 0 chr11 27460246 27460271 -123323282 + (TG)n Simple_repeat Simple_repeat 2 26 0 626 189 0 0 chr11 27460286 27460397 -123323156 + L1MA8 LINE L1 5782 5892 -399 3632 67 0 0 chr11 27460623 27461086 -123322467 + L1PA5 LINE L1 5692 6154 0 1095 288 41 29 chr11 27461100 27461614 -123321939 + LTR33 LTR ERVL 2 521 0 22 35 0 0 chr11 27461653 27461682 -123321871 + AT_rich Low_complexity Low_complexity 1 29 0 234 322 55 60 chr11 27461934 27462117 -123321436 + LTR33A LTR ERVL 4 185 -338 587 292 43 5 chr11 27462183 27462392 -123321161 + LTR33A LTR ERVL 302 518 -5 22 56 0 0 chr11 27462788 27462824 -123320729 + AT_rich Low_complexity Low_complexity 1 36 0 6890 61 39 0 chr11 27463093 27464122 -123319431 - L1PA7 LINE L1 -6 6148 5108 1291 79 0 0 chr11 27464122 27464299 -123319254 - L1PA7 LINE L1 -2167 3979 3803 384 296 89 22 chr11 27464647 27464782 -123318771 + MIR SINE MIR 114 257 -5 369 0 0 0 chr11 27465370 27465411 -123318142 + (TG)n Simple_repeat Simple_repeat 2 42 0 391 284 142 17 chr11 27465995 27466171 -123317382 + MIR SINE MIR 65 262 0 553 282 39 0 chr11 27466253 27466409 -123317144 + MIR SINE MIR 101 262 0 23 0 0 0 chr11 27467520 27467543 -123316010 + AT_rich Low_complexity Low_complexity 1 23 0 333 208 0 0 chr11 27467841 27467913 -123315640 + L1ME4a LINE L1 5794 5865 -256 230 270 14 0 chr11 27467958 27468032 -123315521 + (TA)n Simple_repeat Simple_repeat 2 76 0 2127 129 7 0 chr11 27468202 27468505 -123315048 - AluSx SINE Alu -7 305 1 21 0 0 0 chr11 27468596 27468617 -123314936 + AT_rich Low_complexity Low_complexity 1 21 0 2401 87 0 3 chr11 27468660 27468971 -123314582 + AluY SINE Alu 1 310 -1 302 289 49 14 chr11 27469243 27469385 -123314168 - L1ME4a LINE L1 -23 6098 5952 364 324 67 0 chr11 27469554 27469807 -123313746 - L1ME4a LINE L1 -294 5827 5558 351 64 0 0 chr11 27471131 27471178 -123312375 - MADE1 DNA Mariner 0 80 34 640 349 50 17 chr11 27471583 27472130 -123311423 - L2 LINE L2 -82 3231 2671 212 364 15 0 chr11 27472544 27472610 -123310943 + L2 LINE L2 3119 3185 -87 30 69 0 0 chr11 27472791 27472849 -123310704 + AT_rich Low_complexity Low_complexity 1 58 0 2162 98 6 31 chr11 27473645 27473962 -123309591 - AluSc SINE Alu 0 309 1 526 28 28 0 chr11 27474026 27474098 -123309455 + (TAGA)n Simple_repeat Simple_repeat 1 74 0 324 339 69 15 chr11 27474206 27474336 -123309217 + MIR SINE MIR 14 150 -112 344 277 32 11 chr11 27474484 27474578 -123308975 - MER5A DNA MER1_type -85 104 9 388 114 32 24 chr11 27475066 27475189 -123308364 + (TATAA)n Simple_repeat Simple_repeat 1 124 0 220 348 80 9 chr11 27475521 27475633 -123307920 + MIR SINE MIR 21 140 -68 305 333 9 27 chr11 27478157 27478268 -123305285 + MIR3 SINE MIR 87 195 -13 222 156 0 0 chr11 27478979 27479024 -123304529 + (TCCA)n Simple_repeat Simple_repeat 3 47 0 283 380 48 83 chr11 27479025 27479444 -123304109 - L2 LINE L2 0 3272 2869 2032 196 103 12 chr11 27480592 27480987 -123302566 + MER67C LTR ERV1 2 501 -209 1745 142 91 28 chr11 27480987 27481340 -123302213 + THE1C LTR MaLR 1 375 0 2032 196 103 12 chr11 27481340 27481565 -123301988 + MER67C LTR ERV1 501 704 -6 213 39 0 0 chr11 27482060 27482086 -123301467 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2449 45 0 0 chr11 27482088 27482377 -123301176 - AluY SINE Alu -22 289 1 22 0 0 0 chr11 27482979 27483001 -123300552 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr11 27483034 27483061 -123300492 + AT_rich Low_complexity Low_complexity 1 27 0 28 48 0 0 chr11 27483378 27483420 -123300133 + AT_rich Low_complexity Low_complexity 1 42 0 446 323 12 12 chr11 27483434 27483598 -123299955 + MER5B DNA MER1_type 14 177 -1 21 0 0 0 chr11 27483731 27483752 -123299801 + AT_rich Low_complexity Low_complexity 1 21 0 1123 216 150 13 chr11 27484518 27484824 -123298729 + MLT1A1 LTR MaLR 18 365 0 34 0 0 0 chr11 27485501 27485535 -123298018 + AT_rich Low_complexity Low_complexity 1 34 0 23 54 0 0 chr11 27485631 27485668 -123297885 + AT_rich Low_complexity Low_complexity 1 37 0 21 57 0 0 chr11 27486183 27486218 -123297335 + AT_rich Low_complexity Low_complexity 1 35 0 23 68 0 0 chr11 27488611 27488655 -123294898 + AT_rich Low_complexity Low_complexity 1 44 0 259 184 83 64 chr11 27488883 27488992 -123294561 + MER103 DNA DNA 53 163 -3 573 290 92 18 chr11 27489700 27489917 -123293636 + MIR SINE MIR 20 252 -10 821 360 80 0 chr11 27490815 27491176 -123292377 + L2 LINE L2 2516 2905 -409 384 284 73 0 chr11 27491245 27491354 -123292199 + L2 LINE L2 3197 3313 0 316 375 67 13 chr11 27492148 27492372 -123291181 + L2 LINE L2 2615 2850 -464 385 222 79 56 chr11 27492388 27492514 -123291039 - MER5B DNA MER1_type -46 132 4 261 328 42 25 chr11 27493564 27493683 -123289870 + L2 LINE L2 3133 3253 -19 2100 110 27 0 chr11 27494130 27494422 -123289131 - AluSc SINE Alu -9 300 1 2072 130 10 0 chr11 27494672 27494971 -123288582 + AluSx SINE Alu 2 303 -9 216 212 0 0 chr11 27495161 27495227 -123288326 + (TA)n Simple_repeat Simple_repeat 2 67 0 23 54 0 0 chr11 27495243 27495280 -123288273 + AT_rich Low_complexity Low_complexity 1 37 0 1459 277 39 9 chr11 27496661 27497123 -123286430 + MER110 LTR ERV1 1 476 -15 242 247 173 12 chr11 27497133 27497214 -123286339 - MIR SINE MIR -158 104 11 415 327 168 9 chr11 27497792 27498012 -123285541 - MIR SINE MIR 0 262 8 241 296 34 11 chr11 27498178 27498266 -123285287 + L2 LINE L2 1851 1940 -1374 1053 47 0 0 chr11 27498266 27498393 -123285160 - AluY SINE Alu -5 306 180 962 175 33 42 chr11 27498398 27498638 -123284915 + MSTA-int LTR MaLR 1343 1580 0 1633 183 126 23 chr11 27498638 27499026 -123284527 + MSTA LTR MaLR 1 428 0 576 102 31 10 chr11 27499027 27499125 -123284428 - L1M LINE L1 -889 5414 5315 * 1249 195 49 3 chr11 27499123 27499431 -123284122 + L1M LINE L1 4982 5303 -843 24 0 0 0 chr11 27499482 27499506 -123284047 + AT_rich Low_complexity Low_complexity 1 24 0 2290 111 3 0 chr11 27499509 27499807 -123283746 + AluSg SINE Alu 1 299 -11 2569 102 8 0 chr11 27500531 27500883 -123282670 + THE1A LTR MaLR 1 355 0 8732 114 12 16 chr11 27500883 27501313 -123282240 + THE1A-int LTR MaLR 1 431 -1149 2152 117 0 0 chr11 27501313 27501624 -123281929 + AluSc SINE Alu 1 311 0 8732 114 12 16 chr11 27501624 27501827 -123281726 + THE1A-int LTR MaLR 431 633 -947 5212 82 4 11 chr11 27501827 27502520 -123281033 - LTR12 LTR ERV1 0 688 1 8732 114 12 16 chr11 27502520 27503177 -123280376 + THE1A-int LTR MaLR 633 1289 -291 7128 232 64 36 chr11 27503318 27505785 -123277768 - L1PA12 LINE L1 -4269 3315 1 716 160 56 0 chr11 27505784 27505909 -123277644 - L1PA16 LINE L1 -126 6040 5909 * 421 314 114 33 chr11 27505962 27506261 -123277292 + L1M4 LINE L1 3728 4050 -2096 531 277 31 6 chr11 27506386 27506545 -123277008 + L1M4 LINE L1 5103 5265 -881 * 2695 209 25 32 chr11 27506523 27506589 -123276964 + L1MB7 LINE L1 4551 4616 -1530 1596 136 21 100 chr11 27506589 27506919 -123276634 + AluYb8 SINE Alu 1 304 -14 2695 209 25 32 chr11 27506919 27507533 -123276020 + L1MB7 LINE L1 4616 5226 -920 1006 216 33 16 chr11 27507527 27507772 -123275781 + L1MB7 LINE L1 5936 6184 0 * 27 49 0 0 chr11 27507988 27508029 -123275524 + AT_rich Low_complexity Low_complexity 1 41 0 329 156 36 1 chr11 27508378 27508467 -123275086 - MSTB2 LTR MaLR -3 433 294 944 284 64 60 chr11 27508512 27509026 -123274527 - L2 LINE L2 -2641 673 158 2816 13 0 0 chr11 27509231 27509541 -123274012 - AluYa5 SINE Alu -1 310 1 2190 114 3 0 chr11 27510889 27511188 -123272365 - AluSg SINE Alu -10 300 1 2108 115 7 7 chr11 27511444 27511739 -123271814 + AluSx SINE Alu 1 295 -17 840 332 65 14 chr11 27512342 27512755 -123270798 + L2 LINE L2 2511 2944 -370 339 281 171 12 chr11 27512807 27512971 -123270582 + L2 LINE L2 3116 3305 -8 336 48 0 0 chr11 27512999 27513038 -123270515 + (CA)n Simple_repeat Simple_repeat 1 81 0 336 48 0 0 chr11 27513038 27513080 -123270473 + (CA)n Simple_repeat Simple_repeat 1 42 0 2192 96 7 13 chr11 27513304 27513606 -123269947 - AluSq SINE Alu -13 300 1 274 318 113 26 chr11 27514091 27514242 -123269311 + MIR SINE MIR 5 168 -94 43695 39 4 1 chr11 27514646 27520781 -123262772 + L1PA3 LINE L1 2 6155 0 375 67 0 17 chr11 27520790 27520850 -123262703 + L1PA6 LINE L1 6094 6152 -2 306 271 88 35 chr11 27522232 27522402 -123261151 - L2 LINE L2 0 3313 3135 673 332 126 11 chr11 27522457 27522920 -123260633 - L2 LINE L2 -164 3149 2625 394 250 23 0 chr11 27523032 27523120 -123260433 - L2 LINE L2 -2 3311 3222 180 176 0 0 chr11 27523138 27523172 -123260381 + (CATA)n Simple_repeat Simple_repeat 3 36 0 443 237 59 0 chr11 27523303 27523421 -123260132 - L2 LINE L2 -789 2525 2401 564 204 0 26 chr11 27523547 27523660 -123259893 - MSTB LTR MaLR -316 110 1 549 179 7 11 chr11 27523810 27523927 -123259626 - L1PA15 LINE L1 0 6166 6047 366 80 0 0 chr11 27523986 27524036 -123259517 + (GGAA)n Simple_repeat Simple_repeat 1 50 0 198 118 0 0 chr11 27524620 27524654 -123258899 + (CAGAGA)n Simple_repeat Simple_repeat 2 35 0 378 320 152 26 chr11 27524886 27525195 -123258358 + L2 LINE L2 2962 3309 -4 395 338 57 22 chr11 27525240 27525468 -123258085 + MIR SINE MIR 23 258 -4 320 351 135 10 chr11 27526979 27527187 -123256366 + MIR SINE MIR 3 236 -26 399 21 0 0 chr11 27528672 27528720 -123254833 + (TG)n Simple_repeat Simple_repeat 1 48 0 459 0 0 0 chr11 27528822 27528873 -123254680 + (TAGA)n Simple_repeat Simple_repeat 1 51 0 1150 262 150 28 chr11 27529881 27530308 -123253245 + MLT1H LTR MaLR 1 479 -70 3666 119 41 10 chr11 27530708 27531322 -123252231 - L1MA3 LINE L1 -2 6303 5671 322 350 103 58 chr11 27533521 27533672 -123249881 + L1ME4a LINE L1 5520 5663 -458 1643 161 6 59 chr11 27533672 27533994 -123249559 + AluJb SINE Alu 3 307 -5 322 350 103 58 chr11 27533994 27534328 -123249225 + L1ME4a LINE L1 5663 6027 -94 276 284 68 23 chr11 27534395 27534483 -123249070 - MIR SINE MIR -169 93 2 439 253 86 48 chr11 27534559 27534745 -123248808 - MIR SINE MIR -8 254 62 492 279 112 0 chr11 27535930 27536091 -123247462 - MIR SINE MIR -82 180 2 31 88 0 0 chr11 27537976 27538056 -123245497 + AT_rich Low_complexity Low_complexity 1 80 0 33 0 0 0 chr11 27539290 27539323 -123244230 + AT_rich Low_complexity Low_complexity 1 33 0 754 200 32 26 chr11 27539456 27539641 -123243912 - MER5A DNA MER1_type 0 178 1 480 358 89 36 chr11 27539680 27540094 -123243459 - L2 LINE L2 -25 3247 2812 393 22 0 0 chr11 27540443 27540489 -123243064 + (TG)n Simple_repeat Simple_repeat 1 46 0 180 0 0 0 chr11 27540488 27540508 -123243045 + (GA)n Simple_repeat Simple_repeat 1 20 0 * 250 398 65 57 chr11 27540895 27541264 -123242289 + L2 LINE L2 2900 3271 -1 381 298 84 47 chr11 27541373 27541588 -123241965 + L1ME LINE L1 5597 5819 -302 376 300 26 24 chr11 27542312 27542567 -123240986 + MER93a LTR ERV1 140 395 -8 256 235 0 0 chr11 27542796 27542847 -123240706 + MLT1K LTR MaLR 538 588 0 2402 105 34 0 chr11 27542911 27543263 -123240290 - THE1B LTR MaLR 0 364 1 1889 142 21 0 chr11 27544087 27544368 -123239185 + AluSx SINE Alu 1 287 -25 225 0 0 0 chr11 27544372 27544397 -123239156 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 728 281 8 54 chr11 27544423 27544665 -123238888 + MIR SINE MIR 18 248 -14 272 255 29 49 chr11 27544672 27544774 -123238779 - MIR SINE MIR -114 148 49 1509 199 3 22 chr11 27545435 27545751 -123237802 - AluJo SINE Alu 0 312 3 435 105 0 105 chr11 27545765 27545860 -123237693 - L1PA10 LINE L1 0 6168 6084 351 0 0 0 chr11 27545982 27546021 -123237532 + (TG)n Simple_repeat Simple_repeat 2 40 0 3960 130 66 24 chr11 27546159 27546867 -123236686 - L1PB4 LINE L1 0 6156 5479 2165 123 121 21 chr11 27546867 27547256 -123236297 + MSTA LTR MaLR 1 428 0 7305 177 108 9 chr11 27547256 27548758 -123234795 + MSTA-int LTR MaLR 1 1651 0 1633 183 126 23 chr11 27548758 27549146 -123234407 + MSTA LTR MaLR 1 428 0 3960 130 66 24 chr11 27549146 27549213 -123234340 - L1PB4 LINE L1 -676 5480 5347 499 294 53 12 chr11 27550016 27550186 -123233367 - MER5B DNA MER1_type -1 177 1 1146 138 10 10 chr11 27550504 27550699 -123232854 - MER46A DNA MER2_type -15 221 27 2099 111 0 0 chr11 27551295 27551606 -123231947 - AluSx SINE Alu 0 312 12 384 328 99 15 chr11 27552103 27552304 -123231249 + MIR SINE MIR 39 256 -6 1845 169 10 0 chr11 27552413 27552714 -123230839 + AluJo SINE Alu 1 304 -8 673 285 52 0 chr11 27552791 27552984 -123230569 - MIR SINE MIR -53 209 7 2458 66 10 0 chr11 27553503 27553807 -123229746 + AluSp SINE Alu 1 307 -6 22 35 0 0 chr11 27604863 27604892 -123178661 + AT_rich Low_complexity Low_complexity 1 29 0 883 172 24 53 chr11 27605058 27605267 -123178286 - MLT2D LTR ERVL -211 203 1 1787 175 16 0 chr11 27605270 27605585 -123177968 - L1MC1 LINE L1 -418 5915 5596 334 197 4 2 chr11 27605585 27605661 -123177892 + MLT1D LTR MaLR 298 505 0 277 315 27 18 chr11 27606073 27606184 -123177369 + MIR SINE MIR 56 167 -95 329 232 33 55 chr11 27606320 27606501 -123177052 - L1MC5 LINE L1 -297 7664 7488 254 394 65 7 chr11 27606508 27606663 -123176890 - L2 LINE L2 -555 2759 2596 275 343 0 0 chr11 27606727 27606829 -123176724 + L2 LINE L2 1846 1947 -1367 2217 128 0 3 chr11 27607979 27608292 -123175261 - AluSq SINE Alu 0 313 2 233 348 57 88 chr11 27608307 27608727 -123174826 + L2 LINE L2 2866 3272 0 390 256 156 69 chr11 27609576 27609736 -123173817 - MER5A DNA MER1_type -12 177 4 399 279 137 11 chr11 27610157 27610340 -123173213 - MIR SINE MIR -54 208 3 230 364 101 32 chr11 27610885 27611132 -123172421 - L3 LINE CR1 -164 1413 1150 537 322 62 6 chr11 27611151 27611328 -123172225 + MIR SINE MIR 26 212 -50 269 332 186 22 chr11 27611318 27611640 -123171913 - L3 LINE CR1 -476 1101 727 * 180 0 0 0 chr11 27611718 27611738 -123171815 + (TTA)n Simple_repeat Simple_repeat 2 21 0 3318 50 5 25 chr11 27611740 27612180 -123171373 - L1PA7 LINE L1 -18 6136 5706 383 374 11 22 chr11 27613183 27613365 -123170188 + MIR3 SINE MIR 15 194 -14 203 121 0 0 chr11 27615146 27615180 -123168373 - MER5A DNA MER1_type -152 37 4 266 357 52 0 chr11 27615883 27616037 -123167516 + HAL1 LINE L1 1384 1545 -962 276 240 0 0 chr11 27617202 27617252 -123166301 + MIR SINE MIR 78 127 -81 306 292 44 9 chr11 27617290 27617403 -123166150 - MIR SINE MIR 0 262 146 26 30 0 0 chr11 27617780 27617813 -123165740 + AT_rich Low_complexity Low_complexity 1 33 0 462 125 45 23 chr11 27617923 27618011 -123165542 - L1MC2 LINE L1 -2 6342 6253 1343 167 0 0 chr11 27618031 27618247 -123165306 - MSTA LTR MaLR -2 426 211 1143 143 0 0 chr11 27618264 27618425 -123165128 - AluJb SINE Alu -16 296 136 826 175 140 0 chr11 27618425 27618596 -123164957 - MSTA LTR MaLR -231 197 3 788 154 47 7 chr11 27618596 27618745 -123164808 - MSTA-int LTR MaLR -1 1650 1496 * 3438 167 20 5 chr11 27618736 27619371 -123164182 - MSTA-int LTR MaLR -1006 645 1 2123 170 80 10 chr11 27619371 27619771 -123163782 - MSTA LTR MaLR 0 428 1 988 138 87 41 chr11 27619776 27619994 -123163559 - L1MC1 LINE L1 -104 6229 6002 281 83 0 0 chr11 27620026 27620062 -123163491 + THE1C LTR MaLR 5 40 -335 1447 118 5 0 chr11 27620167 27620370 -123163183 + THE1B-int LTR MaLR 1157 1360 -220 38416 75 7 12 chr11 27620370 27622115 -123161438 + L1PA3 LINE L1 1 1753 -4402 2480 18 0 0 chr11 27622115 27622389 -123161164 + AluYa5 SINE Alu 35 308 -3 38416 75 7 12 chr11 27622389 27626828 -123156725 + L1PA3 LINE L1 1753 6155 0 7022 57 8 1 chr11 27626837 27627968 -123155585 + L1PA6 LINE L1 5016 6153 -1 1595 103 4 0 chr11 27627994 27628228 -123155325 + THE1B-int LTR MaLR 1346 1580 0 2509 129 3 3 chr11 27628228 27628592 -123154961 + THE1B LTR MaLR 1 364 0 5242 209 38 2 chr11 27628592 27630513 -123153040 + L1PA16 LINE L1 4202 6164 -2 324 322 168 7 chr11 27631393 27631679 -123151874 - L1ME4a LINE L1 -38 6083 5752 21 36 0 0 chr11 27632515 27632543 -123151010 + AT_rich Low_complexity Low_complexity 1 28 0 3231 140 22 4 chr11 27633291 27633840 -123149713 - L1MA8 LINE L1 -3 6288 5730 337 379 85 20 chr11 27634714 27635020 -123148533 - L2 LINE L2 -360 2954 2629 198 159 45 0 chr11 27636006 27636050 -123147503 - MIR SINE MIR -80 128 83 31 0 0 0 chr11 27636386 27636417 -123147136 + AT_rich Low_complexity Low_complexity 1 31 0 646 310 98 18 chr11 27636947 27637273 -123146280 - L3 LINE CR1 -73 1504 1153 523 246 18 83 chr11 27637685 27637913 -123145640 - MER58C DNA MER1_type -1 214 2 765 310 106 24 chr11 27638355 27638771 -123144782 - MLT1J2 LTR MaLR 0 450 1 183 154 46 0 chr11 27639338 27639403 -123144150 + (TA)n Simple_repeat Simple_repeat 1 68 0 1296 148 148 71 chr11 27639636 27639975 -123143578 - LTR49 LTR ERV1 -30 565 201 26 0 0 0 chr11 27640068 27640094 -123143459 + AT_rich Low_complexity Low_complexity 1 26 0 26 30 0 0 chr11 27640184 27640217 -123143336 + AT_rich Low_complexity Low_complexity 1 33 0 4204 160 47 4 chr11 27640554 27641284 -123142269 + MER41B-int LTR ERV1 169 929 -5017 2921 148 80 22 chr11 27641270 27641809 -123141744 + MER41B-int LTR ERV1 1206 1775 -4171 * 498 128 39 0 chr11 27641788 27641866 -123141687 + MER41B-int LTR ERV1 1944 2024 -4239 * 3332 158 79 44 chr11 27641891 27642623 -123140930 + MER41B-int LTR ERV1 2261 3018 -3245 * 7096 102 28 10 chr11 27642621 27643660 -123139893 + MER41B-int LTR ERV1 4889 5946 0 3748 150 13 2 chr11 27643660 27644288 -123139265 + MER41B LTR ERV1 1 635 0 2358 77 0 3 chr11 27644341 27644640 -123138913 + AluY SINE Alu 1 298 -13 457 186 50 118 chr11 27644664 27644794 -123138759 - MLT1F LTR MaLR 0 542 424 2964 92 5 1 chr11 27644794 27645400 -123138153 - PABL_A LTR ERV1 0 660 8 1733 249 27 17 chr11 27645394 27645705 -123137848 - MLT1F LTR MaLR -123 419 102 * 3347 137 40 5 chr11 27645705 27646280 -123137273 + LTR49 LTR ERV1 1 595 0 1733 249 27 17 chr11 27646280 27646381 -123137172 - MLT1F LTR MaLR -440 102 3 1739 103 0 21 chr11 27647072 27647315 -123136238 - AluSg SINE Alu -18 292 55 847 219 5 33 chr11 27647786 27648001 -123135552 + MER3 DNA MER1_type 1 209 0 216 111 0 0 chr11 27648094 27648130 -123135423 + (CAT)n Simple_repeat Simple_repeat 3 38 0 319 376 34 98 chr11 27648157 27648878 -123134675 + L2 LINE L2 2601 3272 0 281 286 165 8 chr11 27649184 27649317 -123134236 - MIR SINE MIR -35 227 74 424 347 119 25 chr11 27649783 27650103 -123133450 + MLT1K LTR MaLR 10 359 -229 2099 154 46 29 chr11 27650115 27650657 -123132896 - MLT2A2 LTR ERVL 0 554 3 389 240 85 85 chr11 27651234 27651434 -123132119 - MIR SINE MIR -50 212 13 3428 214 76 27 chr11 27651439 27651894 -123131659 + Charlie1a DNA MER1_type 2 433 -2328 2060 144 0 3 chr11 27651894 27652192 -123131361 - AluSx SINE Alu -14 298 2 3428 214 76 27 chr11 27652192 27652426 -123131127 + Charlie1a DNA MER1_type 433 654 -2107 2139 134 0 0 chr11 27652426 27652724 -123130829 + AluSx SINE Alu 1 298 -14 3428 214 76 27 chr11 27652724 27652990 -123130563 + Charlie1a DNA MER1_type 654 1005 -450 1179 151 110 33 chr11 27653016 27653353 -123130200 + Charlie1a DNA MER1_type 1089 1451 -4 484 305 62 49 chr11 27653377 27653685 -123129868 - L2 LINE L2 -79 3234 2923 188 65 0 32 chr11 27655457 27655488 -123128065 + (TTTTTG)n Simple_repeat Simple_repeat 2 31 0 288 158 0 0 chr11 27655635 27655692 -123127861 + CT-rich Low_complexity Low_complexity 1 57 0 1733 146 0 63 chr11 27656347 27656672 -123126881 - AluSx SINE Alu 0 306 1 258 318 91 13 chr11 27657946 27658100 -123125453 - MIR SINE MIR -44 218 53 868 138 36 0 chr11 27658551 27658718 -123124835 - L1MA8 LINE L1 0 6291 6119 1911 122 68 54 chr11 27659267 27659637 -123123916 + THE1C LTR MaLR 1 375 0 9608 118 8 88 chr11 27659637 27661036 -123122517 + THE1C-int LTR MaLR 1 1238 -342 2163 103 19 26 chr11 27661036 27661346 -123122207 + AluSg SINE Alu 1 308 -2 9608 118 8 88 chr11 27661346 27661663 -123121890 + THE1C-int LTR MaLR 1238 1579 -1 1727 146 76 25 chr11 27661664 27662021 -123121532 + THE1C LTR MaLR 1 375 0 603 158 15 8 chr11 27662083 27662216 -123121337 + CT-rich Low_complexity Low_complexity 3 136 0 1218 234 75 3 chr11 27662248 27662530 -123121023 - AluJo SINE Alu 0 302 1 238 325 32 26 chr11 27662621 27662775 -123120778 - L1ME LINE L1 -380 5782 5628 230 319 76 17 chr11 27662815 27662934 -123120619 - L1ME LINE L1 -538 5583 5458 602 84 0 0 chr11 27663255 27663338 -123120215 - Alu SINE Alu -9 303 221 1351 315 72 65 chr11 27663339 27664972 -123118581 - L1ME LINE L1 -1121 5025 3383 214 232 43 29 chr11 27665735 27665804 -123117749 + MIR SINE MIR 84 144 -64 1751 287 109 91 chr11 27665854 27667695 -123115858 - L2 LINE L2 0 3313 1442 23 33 0 0 chr11 27668598 27668628 -123114925 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr11 27668738 27668767 -123114786 + AT_rich Low_complexity Low_complexity 1 29 0 570 206 59 0 chr11 27671288 27671424 -123112129 - MLT1E LTR MaLR 0 654 511 * 799 261 96 56 chr11 27671397 27671623 -123111930 - MLT1E LTR MaLR -199 394 152 405 0 0 0 chr11 27671623 27671668 -123111885 + (CA)n Simple_repeat Simple_repeat 2 46 0 799 261 96 56 chr11 27671668 27671744 -123111809 - MLT1E LTR MaLR -441 152 80 221 203 0 78 chr11 27673004 27673068 -123110485 + MIR SINE MIR 96 154 -108 210 143 0 0 chr11 27674104 27674139 -123109414 + (TA)n Simple_repeat Simple_repeat 1 35 0 460 88 18 35 chr11 27674245 27674358 -123109195 + (TCTA)n Simple_repeat Simple_repeat 2 112 0 374 285 6 58 chr11 27674636 27674808 -123108745 - L1ME LINE L1 -400 5721 5559 614 152 9 0 chr11 27675085 27675197 -123108356 - FLAM_C SINE Alu 0 143 31 184 306 20 0 chr11 27675888 27675937 -123107616 + MIR SINE MIR 194 243 -19 21 36 0 0 chr11 27675944 27675972 -123107581 + AT_rich Low_complexity Low_complexity 1 28 0 187 378 75 51 chr11 27676042 27676336 -123107217 - L2 LINE L2 -32 3240 2940 701 281 77 16 chr11 27676408 27676654 -123106899 - MIR SINE MIR 0 262 2 227 342 59 20 chr11 27676858 27677060 -123106493 + L2 LINE L2 2228 2437 -877 248 292 97 42 chr11 27677436 27677580 -123105973 - MIR SINE MIR 0 262 111 501 17 0 0 chr11 27678949 27679007 -123104546 + (TCTA)n Simple_repeat Simple_repeat 1 58 0 1709 110 11 0 chr11 27679194 27679458 -123104095 - L1 LINE L1 -1324 4822 4556 846 313 61 67 chr11 27679694 27680670 -123102883 + L2 LINE L2 2220 3173 -140 30 27 0 0 chr11 27680881 27680918 -123102635 + AT_rich Low_complexity Low_complexity 1 37 0 2867 206 58 83 chr11 27681075 27681979 -123101574 - L1MD2 LINE L1 -15 6344 5464 708 267 19 24 chr11 27683003 27683213 -123100340 - MER3 DNA MER1_type 0 209 1 2089 188 83 11 chr11 27683280 27683716 -123099837 - MLT1C LTR MaLR 0 467 1 317 333 0 11 chr11 27684743 27684830 -123098723 - MIR3 SINE MIR -108 100 15 1104 291 56 16 chr11 27685327 27685647 -123097906 + LTR40a LTR ERVL 66 398 -121 14649 198 30 9 chr11 27685667 27691956 -123091597 - L1PB1 LINE L1 -1 6866 242 807 216 6 0 chr11 27691975 27692137 -123091416 - L1PB1 LINE L1 -6695 168 6 763 128 9 0 chr11 27692230 27692339 -123091214 + LTR40b LTR ERVL 353 462 0 5419 144 28 29 chr11 27692499 27692690 -123090863 - HSMAR2 DNA Mariner -1 1301 1111 2197 116 0 0 chr11 27692690 27693007 -123090546 - AluSx SINE Alu 0 317 1 5419 144 28 29 chr11 27693007 27693778 -123089775 - HSMAR2 DNA Mariner -191 1111 339 241 242 137 11 chr11 27693792 27693887 -123089666 + L1M4 LINE L1 5005 5111 -1035 1961 121 3 42 chr11 27693899 27694206 -123089347 - AluSc SINE Alu -14 295 1 32 26 0 0 chr11 27694211 27694250 -123089303 + AT_rich Low_complexity Low_complexity 1 39 0 25 31 0 0 chr11 27694305 27694337 -123089216 + AT_rich Low_complexity Low_complexity 1 32 0 486 291 8 0 chr11 27694624 27694751 -123088802 + MLT1I LTR MaLR 29 156 -253 2137 144 128 10 chr11 27694999 27695382 -123088171 - MSTA LTR MaLR 0 428 1 8713 186 19 7 chr11 27695382 27697014 -123086539 - MSTA-int LTR MaLR 0 1651 1 1929 169 137 11 chr11 27697014 27697386 -123086167 - MSTA LTR MaLR 0 428 10 193 56 28 28 chr11 27697388 27697424 -123086129 + (CATATA)n Simple_repeat Simple_repeat 1 36 0 635 276 18 26 chr11 27697750 27697978 -123085575 - L1ME2 LINE L1 -20 6144 5919 2034 234 59 42 chr11 27697990 27698756 -123084797 - L1ME2 LINE L1 -838 5308 4530 256 380 9 26 chr11 27699006 27699030 -123084523 - MIR SINE MIR -64 144 121 2276 99 0 0 chr11 27699030 27699362 -123084191 + AluSx SINE Alu 3 334 0 256 380 9 26 chr11 27699362 27699449 -123084104 - MIR SINE MIR -87 121 34 185 311 185 15 chr11 27701437 27701572 -123081981 + MIR SINE MIR 93 250 -12 348 335 108 12 chr11 27702183 27702350 -123081203 + MIR SINE MIR 10 192 -70 790 276 166 33 chr11 27704807 27704982 -123078571 + MLT1D LTR MaLR 1 151 -354 2000 117 0 4 chr11 27704982 27705263 -123078290 + AluSx SINE Alu 33 312 0 790 276 166 33 chr11 27705263 27705485 -123078068 + MLT1D LTR MaLR 151 451 -54 317 264 64 18 chr11 27706076 27706186 -123077367 - MIR SINE MIR -38 224 110 333 0 0 0 chr11 27707131 27707168 -123076385 + (CA)n Simple_repeat Simple_repeat 2 38 0 294 255 245 0 chr11 27707411 27707509 -123076044 - MER5A DNA MER1_type -7 182 61 1599 260 95 55 chr11 27707724 27708373 -123075180 + L1MCc LINE L1 1090 1711 -5411 207 0 0 0 chr11 27708373 27708396 -123075157 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1599 260 95 55 chr11 27708396 27708573 -123074980 + L1MCc LINE L1 1711 1879 -5243 213 94 0 0 chr11 27708573 27708605 -123074948 + (CA)n Simple_repeat Simple_repeat 2 33 0 1599 260 95 55 chr11 27708605 27709309 -123074244 + L1MCc LINE L1 1879 2871 -4251 759 157 143 0 chr11 27709320 27709460 -123074093 + AluJb SINE Alu 1 160 -152 493 186 0 0 chr11 27709461 27709547 -123074006 + MLT1A1 LTR MaLR 280 365 0 591 268 61 22 chr11 27709548 27709776 -123073777 - MLT1E LTR MaLR -342 251 15 202 323 32 86 chr11 27709983 27710076 -123073477 + L2 LINE L2 3092 3179 -93 858 289 98 15 chr11 27710266 27710743 -123072810 + LTR33 LTR ERVL 1 517 -4 251 327 0 0 chr11 27710834 27710889 -123072664 - L2 LINE L2 -71 3201 3147 851 129 34 0 chr11 27710956 27711103 -123072450 - L1MA7 LINE L1 -3 6288 6137 1150 168 46 50 chr11 27711106 27711368 -123072185 + L1MA7 LINE L1 5886 6146 -145 346 288 187 23 chr11 27711603 27711822 -123071731 - MIR SINE MIR -1 261 7 729 275 120 63 chr11 27713122 27713683 -123069870 - MLT1H1 LTR MaLR -11 544 1 529 285 40 13 chr11 27714999 27715150 -123068403 - MIR SINE MIR -72 190 36 296 289 154 0 chr11 27715236 27715340 -123068213 + MIR SINE MIR 7 126 -136 624 200 50 22 chr11 27715912 27716092 -123067461 - MER53 DNA DNA -2 187 3 272 301 85 45 chr11 27716516 27716715 -123066838 + MLT1J2 LTR MaLR 122 328 -122 508 278 58 54 chr11 27716952 27717175 -123066378 - MIR SINE MIR -1 261 38 263 274 0 0 chr11 27717869 27717931 -123065622 + L2 LINE L2 3251 3312 -1 236 222 0 0 chr11 27718309 27718354 -123065199 + L2 LINE L2 3264 3308 -5 398 284 68 20 chr11 27718502 27718650 -123064903 + MIR SINE MIR 52 206 -56 2329 51 20 3 chr11 27719768 27719935 -123063618 - AluY SINE Alu -10 301 125 216 0 0 0 chr11 27719935 27719959 -123063594 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2329 51 20 3 chr11 27719959 27720087 -123063466 - AluY SINE Alu -186 125 1 257 324 47 115 chr11 27721271 27721549 -123062004 - L2 LINE L2 -14 3258 3000 22 35 0 0 chr11 27721675 27721704 -123061849 + AT_rich Low_complexity Low_complexity 1 29 0 287 328 102 53 chr11 27721710 27722052 -123061501 - L2 LINE L2 -510 2804 2446 308 265 29 59 chr11 27722178 27722280 -123061273 + MIR SINE MIR 86 184 -78 2512 67 0 0 chr11 27722476 27722774 -123060779 - AluY SINE Alu -13 298 1 209 224 0 17 chr11 27723356 27723414 -123060139 + (TATATG)n Simple_repeat Simple_repeat 2 58 0 1028 259 15 36 chr11 27723754 27724121 -123059432 + L1MC4 LINE L1 7691 7995 0 21 71 0 0 chr11 27724125 27724167 -123059386 + AT_rich Low_complexity Low_complexity 1 42 0 295 318 48 16 chr11 27726130 27726256 -123057297 - MIR3 SINE MIR -41 167 38 207 264 16 24 chr11 27726866 27726943 -123056610 + GA-rich Low_complexity Low_complexity 2 124 0 28 48 0 0 chr11 27727928 27727970 -123055583 + AT_rich Low_complexity Low_complexity 1 42 0 416 339 48 26 chr11 27727976 27728206 -123055347 - MIR SINE MIR -3 259 25 410 295 94 19 chr11 27728965 27729173 -123054380 - MIR SINE MIR -24 238 19 289 315 32 10 chr11 27730079 27730205 -123053348 - MIR SINE MIR -86 122 26 180 270 16 16 chr11 27730541 27730604 -123052949 + L2 LINE L2 3250 3312 -1 211 147 0 0 chr11 27730833 27730867 -123052686 - MIR SINE MIR -10 252 219 181 342 63 13 chr11 27732629 27732708 -123050845 + L2 LINE L2 3001 3083 -189 1003 264 70 52 chr11 27732763 27733108 -123050445 - MER69 DNA AcHobo -2041 485 135 243 336 55 18 chr11 27733929 27734039 -123049514 + L2 LINE L2 3139 3252 -20 1059 174 162 43 chr11 27734119 27734399 -123049154 - AluJo SINE Alu 0 310 1 638 242 50 45 chr11 27735326 27735611 -123047942 + MLT1G1 LTR MaLR 10 267 -288 249 281 171 14 chr11 27735660 27735806 -123047747 + MLT1G1 LTR MaLR 407 575 -15 1699 267 55 9 chr11 27735820 27736400 -123047153 + L1ME3 LINE L1 5261 5867 -295 3401 128 66 2 chr11 27737579 27738183 -123045370 + L1PBa LINE L1 1842 2484 -4379 4969 220 19 49 chr11 27738284 27739039 -123044514 + L1 LINE L1 3280 4056 -2090 2202 130 3 0 chr11 27739039 27739346 -123044207 + AluSp SINE Alu 1 308 -5 4969 220 19 49 chr11 27739346 27739754 -123043799 + L1 LINE L1 4056 4475 -1671 189 0 0 0 chr11 27739754 27739775 -123043778 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 4969 220 19 49 chr11 27739775 27739854 -123043699 + L1 LINE L1 4475 4555 -1591 2000 107 41 4 chr11 27739854 27740124 -123043429 + AluSc SINE Alu 1 385 0 870 9 19 0 chr11 27740124 27740229 -123043324 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 4969 220 19 49 chr11 27740229 27740381 -123043172 + L1 LINE L1 4555 4635 -1511 519 84 21 42 chr11 27740484 27740579 -123042974 + L1PBa LINE L1 2519 2611 -4252 337 100 0 50 chr11 27740577 27740637 -123042916 + L1PBa LINE L1 2814 2870 -3993 * 1404 156 0 0 chr11 27740652 27740864 -123042689 - AluSq SINE Alu 0 313 102 2658 168 9 26 chr11 27740867 27741440 -123042113 + L1 LINE L1 2877 3439 -3423 186 71 0 0 chr11 27741661 27741689 -123041864 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 2207 88 4 0 chr11 27741714 27741988 -123041565 - AluY SINE Alu -36 275 1 25 0 0 0 chr11 27742128 27742153 -123041400 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr11 27742791 27742819 -123040734 + AT_rich Low_complexity Low_complexity 1 28 0 26 30 0 0 chr11 27742964 27742997 -123040556 + AT_rich Low_complexity Low_complexity 1 33 0 961 255 14 3 chr11 27743145 27743435 -123040118 + L1 LINE L1 2750 3042 -3104 5303 142 19 7 chr11 27743539 27744151 -123039402 + L1PB2 LINE L1 4862 5465 -686 1508 200 39 0 chr11 27744151 27744436 -123039117 + AluJb SINE Alu 1 296 -16 5303 142 19 7 chr11 27744436 27745095 -123038458 + L1PB2 LINE L1 5465 6144 -7 2118 139 3 0 chr11 27745108 27745411 -123038142 + AluSq SINE Alu 1 304 -9 822 237 31 0 chr11 27745414 27745642 -123037911 + L1PA15-16 LINE L1 2125 2359 -4490 427 221 115 0 chr11 27745648 27745770 -123037783 + L1PA15-16 LINE L1 3099 3234 -3615 3225 266 15 16 chr11 27745770 27746901 -123036652 + L1P LINE L1 2370 3499 -3350 1919 189 56 12 chr11 27746901 27747309 -123036244 - MSTB LTR MaLR 0 426 1 7527 202 44 13 chr11 27747309 27748910 -123034643 - MSTB-int LTR MaLR 0 1651 1 2019 179 37 22 chr11 27748922 27749329 -123034224 - MSTB LTR MaLR -13 413 1 2695 239 28 21 chr11 27749335 27750255 -123033298 + L1 LINE L1 3501 4427 -2422 2244 195 35 6 chr11 27750284 27750771 -123032782 + THE1-int LTR MaLR 285 785 -795 705 147 0 0 chr11 27750773 27750889 -123032664 + THE1-int LTR MaLR 1021 1136 -444 359 278 139 120 chr11 27751035 27751251 -123032302 + MLT1E LTR MaLR 1 228 -314 2305 112 0 0 chr11 27751251 27751564 -123031989 - AluSq SINE Alu 0 313 1 359 278 139 120 chr11 27751564 27751721 -123031832 + MLT1E LTR MaLR 228 381 -161 1826 183 62 5 chr11 27751807 27752179 -123031374 - MSTD LTR MaLR -3 393 1 1033 254 49 14 chr11 27752191 27752561 -123030992 - HAL1 LINE L1 -742 1765 1383 967 312 77 2 chr11 27752680 27753084 -123030469 + LTR16A LTR ERVL 17 450 0 435 270 44 16 chr11 27753173 27753425 -123030128 - HAL1 LINE L1 -1184 1323 1065 204 241 35 0 chr11 27753446 27753504 -123030049 + CT-rich Low_complexity Low_complexity 1 60 0 429 231 0 19 chr11 27753643 27753799 -123029754 + CT-rich Low_complexity Low_complexity 4 156 0 395 287 81 43 chr11 27754777 27755185 -123028368 - MLT1I LTR MaLR -2 407 24 257 303 184 7 chr11 27755250 27755402 -123028151 - MIR3 SINE MIR 0 208 30 303 265 17 26 chr11 27755477 27755594 -123027959 + MER103 DNA DNA 3 118 -48 491 350 47 20 chr11 27756136 27756436 -123027117 - L3 LINE CR1 -649 928 621 388 327 65 7 chr11 27756750 27756903 -123026650 - MIR SINE MIR -73 189 28 500 298 29 29 chr11 27757080 27757251 -123026302 - MER5A DNA MER1_type 0 189 19 1308 165 4 35 chr11 27757736 27757996 -123025557 - MLT1B LTR MaLR 0 390 139 1953 194 2 25 chr11 27758403 27758800 -123024753 - MLT1B LTR MaLR 0 390 3 2395 161 26 0 chr11 27758955 27759372 -123024181 - MSTC LTR MaLR 0 428 1 29 0 0 0 chr11 27759822 27759851 -123023702 + AT_rich Low_complexity Low_complexity 1 29 0 293 320 0 33 chr11 27759898 27760048 -123023505 + GA-rich Low_complexity Low_complexity 1 145 0 1902 138 3 64 chr11 27760539 27760866 -123022687 + AluSc SINE Alu 1 307 -2 378 0 0 0 chr11 27761930 27761972 -123021581 + (TG)n Simple_repeat Simple_repeat 1 42 0 339 25 0 0 chr11 27761971 27762011 -123021542 + (GA)n Simple_repeat Simple_repeat 1 40 0 * 311 333 128 7 chr11 27763167 27763308 -123020245 - MIR3 SINE MIR -21 187 30 504 81 0 0 chr11 27763408 27763482 -123020071 + (TA)n Simple_repeat Simple_repeat 2 75 0 541 269 54 50 chr11 27763903 27764163 -123019390 + L2 LINE L2 2949 3209 -104 2606 127 56 2 chr11 27764830 27765256 -123018297 + L1PA15 LINE L1 5717 6165 0 29 28 0 0 chr11 27765266 27765302 -123018251 + AT_rich Low_complexity Low_complexity 1 36 0 371 192 0 0 chr11 27765911 27765984 -123017569 + AluJ/FLAM SINE Alu 11 83 -219 22 35 0 0 chr11 27766288 27766317 -123017236 + AT_rich Low_complexity Low_complexity 1 29 0 408 298 86 7 chr11 27766364 27766515 -123017038 + MIR SINE MIR 100 262 0 240 86 0 0 chr11 27766520 27766555 -123016998 + (CTA)n Simple_repeat Simple_repeat 1 35 0 2744 136 48 16 chr11 27766614 27767113 -123016440 - L1MA9 LINE L1 0 6312 5798 234 0 0 0 chr11 27767116 27767142 -123016411 + (TG)n Simple_repeat Simple_repeat 2 27 0 755 197 0 0 chr11 27767307 27767449 -123016104 + MLT1A1 LTR MaLR 224 365 0 2354 188 75 48 chr11 27767449 27768158 -123015395 + Cheshire DNA MER1_type 1691 2418 -2 444 296 35 6 chr11 27768160 27768332 -123015221 - MLT1J2 LTR MaLR -7 443 267 183 222 37 0 chr11 27768438 27768492 -123015061 - L2 LINE L2 -1075 2239 2184 457 254 5 92 chr11 27768593 27768669 -123014884 - L1ME LINE L1 -450 5671 5590 2766 71 5 3 chr11 27768669 27769037 -123014516 - L1PA8 LINE L1 -15 6157 5789 457 254 5 92 chr11 27769037 27769145 -123014408 - L1ME LINE L1 -531 5590 5503 23 54 0 0 chr11 27769176 27769213 -123014340 + AT_rich Low_complexity Low_complexity 1 37 0 4083 92 2 5 chr11 27769442 27770032 -123013521 - L1PA8A LINE L1 -30 6101 5514 611 204 72 30 chr11 27770149 27770507 -123013046 - MER4C LTR ERV1 -224 461 1 2506 174 21 46 chr11 27770691 27771259 -123012294 - MER41C LTR ERV1 0 554 1 2657 40 0 3 chr11 27771680 27772002 -123011551 - L1PA5 LINE L1 -8 6146 5826 1515 58 85 123 chr11 27772002 27772295 -123011258 - AluY SINE Alu -29 282 1 352 316 64 43 chr11 27773696 27773930 -123009623 + MIR SINE MIR 11 249 -13 2201 136 3 3 chr11 27773946 27774300 -123009253 + THE1C LTR MaLR 1 354 -21 205 295 84 42 chr11 27774300 27774395 -123009158 - MIR SINE MIR -123 139 41 326 254 0 0 chr11 27774643 27774706 -123008847 + L2 LINE L2 3209 3271 -1 2031 126 11 0 chr11 27774793 27775078 -123008475 + AluSg SINE Alu 1 288 -22 23590 135 8 6 chr11 27775182 27779261 -123004292 - L1P LINE L1 -771 5375 1290 2981 142 15 0 chr11 27779263 27779743 -123003810 - L1P3 LINE L1 -5375 500 14 1293 198 172 15 chr11 27780105 27780500 -123003053 + MSTB2 LTR MaLR 1 457 0 2017 70 7 25 chr11 27780530 27780816 -123002737 + L1PA7 LINE L1 5873 6153 -1 1750 182 14 14 chr11 27781777 27782124 -123001429 - MER7A DNA MER2_type 0 346 2 1639 163 7 4 chr11 27782355 27782631 -123000922 + MLT1A1 LTR MaLR 10 286 -79 1303 187 106 3 chr11 27783493 27783537 -123000016 - MER63B DNA MER1_type -689 373 335 1787 158 3 11 chr11 27783537 27783865 -122999688 + AluJb SINE Alu 1 326 0 1303 187 106 3 chr11 27783865 27784150 -122999403 - MER63B DNA MER1_type -727 335 9 527 274 35 62 chr11 27785581 27785652 -122997901 + L2 LINE L2 3094 3165 -148 1977 143 0 39 chr11 27785652 27785959 -122997594 - AluSx SINE Alu -17 295 1 527 274 35 62 chr11 27785959 27786113 -122997440 + L2 LINE L2 3165 3313 0 340 299 10 0 chr11 27786237 27786334 -122997219 + MIR SINE MIR 57 154 -108 200 182 0 0 chr11 27789538 27789571 -122993982 + (CA)n Simple_repeat Simple_repeat 1 33 0 262 263 92 13 chr11 27789651 27789727 -122993826 - MIR3 SINE MIR -53 155 93 321 335 70 11 chr11 27790172 27790357 -122993196 + MER117 DNA MER1_type 2 197 0 238 200 0 0 chr11 27790360 27790405 -122993148 + MIR3 SINE MIR 156 200 -8 226 245 0 0 chr11 27790814 27790863 -122992690 - L2 LINE L2 -17 3296 3248 419 213 0 0 chr11 27791111 27791191 -122992362 + MIR SINE MIR 183 262 0 22 35 0 0 chr11 27792042 27792071 -122991482 + AT_rich Low_complexity Low_complexity 1 29 0 985 210 84 27 chr11 27792420 27792765 -122990788 - MSTD LTR MaLR 0 396 1 466 272 72 47 chr11 27792868 27792893 -122990660 - L1ME4a LINE L1 -4 6117 6094 2194 122 0 0 chr11 27792893 27793188 -122990365 + AluSg SINE Alu 1 295 -15 466 272 72 47 chr11 27793188 27793397 -122990156 - L1ME4a LINE L1 -27 6094 5877 312 371 8 8 chr11 27793458 27793582 -122989971 + MIR SINE MIR 32 155 -107 294 306 16 16 chr11 27793597 27793721 -122989832 - MIR SINE MIR -37 225 102 2156 128 0 7 chr11 27794285 27794581 -122988972 + AluSx SINE Alu 1 294 -18 733 370 53 23 chr11 27794613 27795154 -122988399 - L2 LINE L2 -211 3102 2549 235 254 0 18 chr11 27796219 27796283 -122987270 + CT-rich Low_complexity Low_complexity 5 108 0 472 337 34 0 chr11 27796334 27796512 -122987041 + MIR SINE MIR 51 234 -28 239 270 56 11 chr11 27797801 27797890 -122985663 + MER103 DNA DNA 6 98 -68 2299 113 43 38 chr11 27797919 27798292 -122985261 + THE1C LTR MaLR 1 375 0 461 253 180 0 chr11 27798696 27798846 -122984707 - MIR SINE MIR -13 249 73 192 77 0 0 chr11 27799447 27799473 -122984080 + (TATG)n Simple_repeat Simple_repeat 3 28 0 957 269 72 21 chr11 27799849 27800184 -122983369 + LTR16A LTR ERVL 94 445 -5 582 176 0 59 chr11 27800190 27800309 -122983244 + L2 LINE L2 3187 3298 -15 244 306 118 41 chr11 27800484 27800755 -122982798 - L2 LINE L2 0 3313 3022 330 322 176 5 chr11 27800783 27800988 -122982565 + MIR SINE MIR 18 257 -5 219 315 36 48 chr11 27801027 27801192 -122982361 - L2 LINE L2 -338 2975 2813 229 308 0 43 chr11 27802671 27802788 -122980765 + T-rich Low_complexity Low_complexity 4 115 0 220 98 0 59 chr11 27802803 27802854 -122980699 + (TTTTC)n Simple_repeat Simple_repeat 4 51 0 197 247 12 0 chr11 27803130 27803211 -122980342 + CT-rich Low_complexity Low_complexity 3 84 0 191 299 65 26 chr11 27803588 27803665 -122979888 - L2 LINE L2 -50 3263 3184 384 327 102 19 chr11 27803680 27803885 -122979668 + MIR SINE MIR 1 222 -40 22 0 0 0 chr11 27803978 27804000 -122979553 + AT_rich Low_complexity Low_complexity 1 22 0 1979 106 108 41 chr11 27804714 27805055 -122978498 - THE1B LTR MaLR 0 364 1 11221 101 25 0 chr11 27805055 27806596 -122976957 - THE1B-int LTR MaLR 0 1580 1 2071 131 47 33 chr11 27806596 27806955 -122976598 - THE1B LTR MaLR 0 364 1 913 139 97 28 chr11 27808289 27808505 -122975048 - MER44D DNA MER2_type -108 501 1 302 309 59 15 chr11 27808509 27808645 -122974908 + HAL1 LINE L1 2158 2299 -208 299 285 33 74 chr11 27808651 27808893 -122974660 + HAL1 LINE L1 2275 2506 -1 6634 126 9 28 chr11 27809137 27810883 -122972670 - L1MA2 LINE L1 0 7723 6009 1050 148 7 7 chr11 27810883 27811038 -122972515 - AluSx SINE Alu -157 155 1 11835 158 26 19 chr11 27811045 27814373 -122969180 - L1MA2 LINE L1 -2696 4869 1512 1174 207 67 23 chr11 27814363 27814663 -122968890 - L1MA2 LINE L1 -7233 332 20 * 401 217 174 43 chr11 27815473 27815611 -122967942 - MER5B DNA MER1_type 0 178 23 230 350 38 0 chr11 27815687 27815767 -122967786 + MIR SINE MIR 64 146 -62 201 376 68 8 chr11 27816623 27816740 -122966813 - L2 LINE L2 -208 3064 2941 273 289 89 0 chr11 27817038 27817128 -122966425 - L2 LINE L2 -26 3246 3149 594 280 28 0 chr11 27817162 27817344 -122966209 + MIR SINE MIR 76 262 0 327 25 0 0 chr11 27818292 27818332 -122965221 + (TG)n Simple_repeat Simple_repeat 2 41 0 815 341 70 20 chr11 27819562 27819757 -122963796 - L3 LINE CR1 -230 1347 1163 1226 220 82 25 chr11 27819757 27820111 -122963442 + MLT1A2 LTR MaLR 1 374 0 815 341 70 20 chr11 27820111 27820270 -122963283 - L3 LINE CR1 -414 1163 975 204 196 41 41 chr11 27820383 27820480 -122963073 + (TATAA)n Simple_repeat Simple_repeat 5 101 0 366 275 42 21 chr11 27821334 27821476 -122962077 + MER117 DNA MER1_type 51 195 -2 356 264 58 58 chr11 27821476 27821597 -122961956 - MIR3 SINE MIR -53 155 35 286 289 211 0 chr11 27821737 27821865 -122961688 - MIR3 SINE MIR -27 181 27 223 337 0 24 chr11 27821899 27821982 -122961571 - L2 LINE L2 0 3272 3192 362 354 42 16 chr11 27822083 27822275 -122961278 - L2 LINE L2 -189 3083 2887 399 265 31 0 chr11 27823817 27823915 -122959638 - L2 LINE L2 -6 3307 3207 250 341 55 55 chr11 27824493 27824675 -122958878 + L2 LINE L2 2948 3129 -143 314 320 114 41 chr11 27824802 27825021 -122958532 + MIR SINE MIR 23 257 -5 733 222 9 65 chr11 27825176 27825392 -122958161 + MER58A DNA MER1_type 21 224 0 438 261 99 0 chr11 27826575 27826717 -122956836 - MIR SINE MIR -15 247 92 390 283 167 35 chr11 27826716 27826974 -122956579 + L3 LINE CR1 1244 1535 -42 * 465 237 107 58 chr11 27827069 27827124 -122956429 - MIR SINE MIR -3 259 208 225 0 0 0 chr11 27827124 27827149 -122956404 + (TA)n Simple_repeat Simple_repeat 2 26 0 465 237 107 58 chr11 27827149 27827330 -122956223 - MIR SINE MIR -54 208 4 730 309 5 18 chr11 27828111 27828334 -122955219 + MIR SINE MIR 16 235 -27 357 200 62 0 chr11 27828756 27828836 -122954717 + MIR SINE MIR 176 260 -2 2350 78 0 3 chr11 27828963 27829258 -122954295 - AluY SINE Alu -17 294 1 411 320 142 45 chr11 27832221 27832468 -122951085 + L3 LINE CR1 1306 1576 -1 549 318 32 37 chr11 27833285 27833502 -122950051 + MIR SINE MIR 7 222 -40 1325 276 97 0 chr11 27833519 27834163 -122949390 + HsTC2 DNA Tc2 5 721 -1177 528 249 11 6 chr11 27834185 27834362 -122949191 + GA-rich Low_complexity Low_complexity 1 178 0 399 217 0 0 chr11 27834362 27834445 -122949108 + HsTC2 DNA Tc2 1272 1354 -544 478 255 90 21 chr11 27834463 27834753 -122948800 + HsTC2 DNA Tc2 1586 1895 -3 21 36 0 0 chr11 27835509 27835537 -122948016 + AT_rich Low_complexity Low_complexity 1 28 0 254 32 0 0 chr11 27836206 27836237 -122947316 + L1PA5 LINE L1 5702 5732 -422 36043 30 19 1 chr11 27836245 27842265 -122941288 + L1PA2 LINE L1 6 6155 0 3464 33 2 5 chr11 27842265 27842686 -122940867 + L1PA5 LINE L1 5724 6146 -8 29 0 0 0 chr11 27842686 27842715 -122940838 + AT_rich Low_complexity Low_complexity 1 29 0 522 200 30 85 chr11 27842845 27842938 -122940615 - L1MA10 LINE L1 -4 6330 6238 1981 223 109 30 chr11 27842938 27843570 -122939983 - L1ME2 LINE L1 -80 6153 5472 1824 141 42 133 chr11 27843570 27844023 -122939530 - MSTC LTR MaLR 0 428 17 609 246 38 43 chr11 27844023 27844310 -122939243 - L1ME2 LINE L1 -746 5469 5190 760 125 163 0 chr11 27844313 27844473 -122939080 - MER46B DNA MER2_type -175 61 1 1203 246 19 0 chr11 27844483 27844796 -122938757 - L1ME2 LINE L1 -1232 4983 4665 256 313 0 0 chr11 27844792 27844856 -122938697 - L1ME2 LINE L1 -6081 315 252 * 631 217 14 7 chr11 27844867 27845010 -122938543 - L1ME2 LINE L1 -6209 187 44 181 264 209 39 chr11 27846560 27846689 -122936864 - L3 LINE CR1 -257 1320 1170 252 300 50 30 chr11 27846740 27846840 -122936713 + MIR SINE MIR 9 110 -152 202 147 29 0 chr11 27846850 27846918 -122936635 + (TA)n Simple_repeat Simple_repeat 2 71 0 2365 154 150 36 chr11 27846923 27847450 -122936103 + LTR18B LTR ERVL 1 587 -27 228 337 58 0 chr11 27847500 27847586 -122935967 + MIR SINE MIR 161 251 -11 500 268 96 25 chr11 27848284 27848482 -122935071 + MIR SINE MIR 21 232 -30 570 227 0 0 chr11 27848756 27848866 -122934687 + MER20 DNA MER1_type 110 219 0 1728 101 0 0 chr11 27849166 27849393 -122934160 + AluSc SINE Alu 82 308 -1 358 361 0 0 chr11 27850239 27850347 -122933206 + MER117 DNA MER1_type 54 161 -36 328 333 32 16 chr11 27850379 27850502 -122933051 - L2 LINE L2 -1 3271 3147 745 299 87 22 chr11 27850535 27851001 -122932552 + MLT1H LTR MaLR 3 549 0 491 300 104 22 chr11 27851008 27851238 -122932315 + L2 LINE L2 3063 3311 -2 212 378 20 20 chr11 27852003 27852101 -122931452 - L2 LINE L2 -36 3277 3180 248 321 24 0 chr11 27852164 27852248 -122931305 + MIR SINE MIR 162 247 -15 278 26 26 0 chr11 27854054 27854093 -122929460 + (GAGAA)n Simple_repeat Simple_repeat 3 42 0 1084 30 47 0 chr11 27854099 27854268 -122929285 + (GAAA)n Simple_repeat Simple_repeat 4 180 0 212 217 43 0 chr11 27854269 27854315 -122929238 + (CAGA)n Simple_repeat Simple_repeat 1 48 0 245 253 48 0 chr11 27854365 27854448 -122929105 + LTR67 LTR ERVL 457 543 -14 210 255 266 0 chr11 27854450 27854544 -122929009 + L2 LINE L2 3175 3293 -20 2131 177 8 0 chr11 27855828 27856190 -122927363 - MLT1A1 LTR MaLR 0 365 1 657 291 89 18 chr11 27856330 27856885 -122926668 + L1ME LINE L1 4931 5520 -646 1634 230 54 32 chr11 27857349 27857814 -122925739 + MER74A LTR ERVL 14 488 -70 284 202 126 42 chr11 27857707 27857826 -122925727 - MER88 LTR ERVL -257 207 79 * 560 281 132 55 chr11 27858012 27858275 -122925278 - MLT1J2 LTR MaLR -21 429 135 1594 148 31 69 chr11 27858275 27858592 -122924961 - AluJb SINE Alu -7 305 1 560 281 132 55 chr11 27858592 27858655 -122924898 - MLT1J2 LTR MaLR -315 135 78 607 279 116 17 chr11 27859369 27859602 -122923951 - MIR SINE MIR 0 262 7 284 297 82 55 chr11 27861243 27861462 -122922091 + MLT1H LTR MaLR 80 304 -245 2248 221 11 74 chr11 27861703 27862267 -122921286 + MLT2B3 LTR ERVL 4 489 -31 293 189 0 0 chr11 27862409 27862462 -122921091 + MLT2B3 LTR ERVL 461 513 -2 2069 126 13 31 chr11 27864610 27864928 -122918625 - AluSx SINE Alu 0 312 1 806 163 0 0 chr11 27865257 27865392 -122918161 - FLAM_C SINE Alu 0 143 9 337 313 119 21 chr11 27865469 27865722 -122917831 + L2 LINE L2 2782 3058 -214 697 306 79 9 chr11 27865988 27866217 -122917336 + MIR SINE MIR 10 254 -8 1927 91 8 4 chr11 27867028 27867282 -122916271 - AluSg SINE Alu -7 303 49 831 309 55 36 chr11 27867400 27867619 -122915934 + MLT1I LTR MaLR 18 248 -161 2044 209 41 7 chr11 27867619 27868031 -122915522 + MSTB LTR MaLR 1 426 0 831 309 55 36 chr11 27868031 27868196 -122915357 + MLT1I LTR MaLR 248 409 0 294 267 311 7 chr11 27869424 27869559 -122913994 - MIR SINE MIR -9 253 78 2384 104 3 0 chr11 27869613 27869922 -122913631 - AluSp SINE Alu 0 313 4 1790 266 52 78 chr11 27869953 27870038 -122913515 - MER115 DNA AcHobo -3 690 604 680 228 79 40 chr11 27870038 27870240 -122913313 - MER63A DNA MER1_type 0 210 1 1790 266 52 78 chr11 27870240 27870861 -122912692 - MER115 DNA AcHobo -89 604 2 237 118 0 0 chr11 27871294 27871328 -122912225 - MER115 DNA AcHobo -139 554 521 210 339 32 24 chr11 27871340 27871464 -122912089 + MIR SINE MIR 51 175 -87 16665 187 46 26 chr11 27871591 27878232 -122905321 + L1PA13 LINE L1 18 6800 -14 2646 183 55 7 chr11 27878235 27878725 -122904828 - L1MA9 LINE L1 -13 6299 5775 285 89 0 0 chr11 27878725 27878770 -122904783 + (CA)n Simple_repeat Simple_repeat 2 46 0 2646 183 55 7 chr11 27878770 27878859 -122904694 - L1MA9 LINE L1 -537 5775 5692 2394 134 35 44 chr11 27878859 27879313 -122904240 + L1M2 LINE L1 5076 5530 -761 1974 125 63 41 chr11 27879313 27879680 -122903873 + THE1C LTR MaLR 1 375 0 2394 134 35 44 chr11 27879680 27879853 -122903700 + L1M2 LINE L1 5530 5703 -588 201 74 0 0 chr11 27881382 27881409 -122902144 + (T)n Simple_repeat Simple_repeat 1 27 0 1531 209 38 3 chr11 27882557 27882849 -122900704 - AluJo SINE Alu -10 302 1 26 50 0 0 chr11 27882931 27882971 -122900582 + AT_rich Low_complexity Low_complexity 1 40 0 21 82 0 0 chr11 27883088 27883137 -122900416 + AT_rich Low_complexity Low_complexity 1 49 0 2619 52 0 0 chr11 27883258 27883565 -122899988 - AluY SINE Alu 0 311 5 303 107 0 18 chr11 27883573 27883629 -122899924 - L1PA10 LINE L1 0 6168 6114 * 10833 68 10 23 chr11 27883626 27885868 -122897685 - L1PA7 LINE L1 -27 6127 3921 231 357 6 51 chr11 27886208 27886365 -122897188 + MIR3 SINE MIR 38 187 -21 419 53 40 13 chr11 27886709 27886785 -122896768 + (TAGA)n Simple_repeat Simple_repeat 1 78 0 2540 130 32 81 chr11 27886793 27886968 -122896585 - L1M2 LINE L1 -503 5788 5606 3144 27 11 0 chr11 27886968 27887344 -122896209 - L1PA2 LINE L1 0 6155 5776 2540 130 32 81 chr11 27887344 27887636 -122895917 - L1M2 LINE L1 -685 5606 5332 732 223 0 0 chr11 27887636 27887766 -122895787 - FLAM_A SINE Alu -3 130 1 2540 130 32 81 chr11 27887766 27887860 -122895693 - L1M2 LINE L1 -959 5332 5235 10711 192 34 1 chr11 27887982 27890304 -122893249 - L1 LINE L1 -900 5246 2849 269 314 39 26 chr11 27890655 27890811 -122892742 + L2 LINE L2 2753 2910 -404 700 250 75 0 chr11 27891553 27891753 -122891800 + MER58C DNA MER1_type 1 215 0 253 351 0 13 chr11 27892314 27892391 -122891162 + L2 LINE L2 3155 3230 -42 396 40 0 0 chr11 27892407 27892457 -122891096 + (TG)n Simple_repeat Simple_repeat 1 50 0 204 158 0 0 chr11 27894040 27894078 -122889475 + (TTA)n Simple_repeat Simple_repeat 1 38 0 313 186 43 29 chr11 27894319 27894389 -122889164 + MIR SINE MIR 125 195 -67 2354 104 0 0 chr11 27894475 27894773 -122888780 - AluSg SINE Alu -12 298 1 2262 90 3 3 chr11 27895003 27895303 -122888250 + AluSc SINE Alu 1 300 -9 24 0 0 0 chr11 27896197 27896221 -122887332 + AT_rich Low_complexity Low_complexity 1 24 0 1623 149 23 0 chr11 27896349 27896611 -122886942 + MSTA LTR MaLR 161 428 0 8420 168 26 42 chr11 27896611 27898288 -122885265 + MSTA-int LTR MaLR 1 1651 0 2544 154 19 2 chr11 27898288 27898709 -122884844 + MSTA LTR MaLR 1 428 0 21 0 0 0 chr11 27899221 27899242 -122884311 + AT_rich Low_complexity Low_complexity 1 21 0 183 288 82 14 chr11 27900565 27900638 -122882915 - L3 LINE CR1 -213 1364 1287 2229 86 3 17 chr11 27900775 27901077 -122882476 - AluSc SINE Alu -10 299 2 2610 161 118 53 chr11 27902776 27903451 -122880102 - LTR8A LTR ERV1 0 727 9 22 0 0 0 chr11 27903961 27903983 -122879570 + AT_rich Low_complexity Low_complexity 1 22 0 243 0 0 0 chr11 27904440 27904467 -122879086 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 213 39 0 0 chr11 27904889 27904915 -122878638 + (A)n Simple_repeat Simple_repeat 1 26 0 447 293 0 0 chr11 27905175 27905281 -122878272 + MIR SINE MIR 59 164 -98 5628 165 24 47 chr11 27905450 27905670 -122877883 - L1PB3 LINE L1 -3 6867 6643 1977 103 15 94 chr11 27905670 27905999 -122877554 + AluSx SINE Alu 1 303 -9 5628 165 24 47 chr11 27905999 27908139 -122875414 - L1PB3 LINE L1 -227 6643 4572 3474 221 19 34 chr11 27908151 27909310 -122874243 - L1PB3 LINE L1 -3166 3696 2556 2216 106 0 26 chr11 27909310 27909612 -122873941 + AluY SINE Alu 1 294 -17 3474 221 19 34 chr11 27909612 27909651 -122873902 - L1PB3 LINE L1 -4306 2556 2518 1672 138 138 46 chr11 27909654 27909827 -122873726 + MSTA LTR MaLR 1 157 -271 13494 45 3 1 chr11 27909827 27912290 -122871263 + L1PA5 LINE L1 3680 6151 -3 1672 138 138 46 chr11 27912290 27912508 -122871045 + MSTA LTR MaLR 157 428 0 2744 149 34 2 chr11 27912508 27913003 -122870550 + MSTA-int LTR MaLR 1 511 -1140 1315 127 52 13 chr11 27912997 27913226 -122870327 - THE1-int LTR MaLR -299 1281 1044 * 5634 227 48 22 chr11 27913224 27915831 -122867722 - L1PB3 LINE L1 -5126 1737 6 1087 84 19 0 chr11 27916544 27916699 -122866854 - L1PA7 LINE L1 -2 6152 5995 1434 48 0 0 chr11 27916699 27916885 -122866668 + L1PA7 LINE L1 5794 5979 -175 333 271 163 36 chr11 27916975 27917196 -122866357 + MIR SINE MIR 6 254 -8 576 297 103 19 chr11 27917987 27918250 -122865303 + L2 LINE L2 2374 2658 -656 349 342 52 16 chr11 27918276 27918469 -122865084 - MIR SINE MIR -23 239 40 680 294 17 6 chr11 27918672 27918852 -122864701 - L2 LINE L2 0 3313 3132 * 697 305 41 2 chr11 27918851 27919117 -122864436 - L2 LINE L2 -1833 1481 1147 470 308 76 25 chr11 27919130 27919328 -122864225 - MIR SINE MIR -37 225 18 5066 59 0 2 chr11 27919505 27920258 -122863295 - L1PA6 LINE L1 -232 5922 5171 1389 111 0 0 chr11 27920258 27920457 -122863096 - MSTA LTR MaLR -228 200 2 191 301 126 44 chr11 27920498 27920704 -122862849 + L3 LINE CR1 1349 1571 -6 762 253 63 18 chr11 27920770 27920991 -122862562 + MIR SINE MIR 32 262 0 286 346 138 35 chr11 27921601 27922058 -122861495 + L2 LINE L2 2809 3312 -1 652 335 51 11 chr11 27922254 27922609 -122860944 + LTR16C LTR ERVL 114 482 -9 14512 138 22 6 chr11 27923437 27923774 -122859779 + Tigger1 DNA MER2_type 1 331 -2087 369 0 0 0 chr11 27923774 27923815 -122859738 + (TC)n Simple_repeat Simple_repeat 2 42 0 14512 138 22 6 chr11 27923815 27925855 -122857698 + Tigger1 DNA MER2_type 331 2417 -1 282 361 207 5 chr11 27926934 27927142 -122856411 + MIR SINE MIR 13 262 0 382 266 165 27 chr11 27927160 27927348 -122856205 - MIR SINE MIR -29 233 20 830 205 46 5 chr11 27927363 27927558 -122855995 - MER3 DNA MER1_type -5 204 2 3106 132 136 42 chr11 27928419 27929430 -122854123 - MER11A LTR ERVK 0 1266 1 235 307 0 40 chr11 27931130 27931205 -122852348 - L2 LINE L2 -4 3309 3238 1283 195 161 43 chr11 27932013 27932362 -122851191 - MLT1B LTR MaLR 0 390 1 663 247 101 32 chr11 27932784 27933092 -122850461 + MER102a DNA MER1_type 1 329 -1 446 262 88 47 chr11 27933348 27933541 -122850012 - MIR SINE MIR -49 213 2 182 93 0 47 chr11 27934146 27934189 -122849364 + (TTTTTG)n Simple_repeat Simple_repeat 5 45 0 688 193 32 80 chr11 27934323 27934510 -122849043 - MER5B DNA MER1_type 0 178 1 22 0 0 0 chr11 27936284 27936306 -122847247 + AT_rich Low_complexity Low_complexity 1 22 0 23 68 0 0 chr11 27937228 27937272 -122846281 + AT_rich Low_complexity Low_complexity 1 44 0 215 248 179 43 chr11 27939364 27939481 -122844072 - MIR SINE MIR -14 248 116 24 0 0 0 chr11 27940106 27940130 -122843423 + AT_rich Low_complexity Low_complexity 1 24 0 1356 194 103 6 chr11 27940130 27940470 -122843083 - L1MA9 LINE L1 0 6312 5940 459 342 27 16 chr11 27942313 27942500 -122841053 - MIR3 SINE MIR -17 191 3 304 276 0 0 chr11 27942655 27942731 -122840822 - MLT1L LTR MaLR 0 615 540 449 208 10 30 chr11 27942878 27942979 -122840574 + MIR3 SINE MIR 91 189 -19 372 304 44 39 chr11 27942983 27943164 -122840389 + MER5A DNA MER1_type 7 188 -1 670 150 82 48 chr11 27943224 27943371 -122840182 + MER58C DNA MER1_type 63 214 -1 774 207 18 12 chr11 27943991 27944155 -122839398 - MER3 DNA MER1_type -78 131 14 1883 163 0 0 chr11 27944158 27944459 -122839094 + AluJb SINE Alu 1 301 -11 503 264 31 37 chr11 27944566 27944729 -122838824 + MIR SINE MIR 89 250 -12 758 234 27 5 chr11 27944799 27944983 -122838570 - MER5A DNA MER1_type 0 189 2 516 239 162 60 chr11 27945302 27945536 -122838017 - MER113 DNA MER1_type? -5 516 259 2341 90 3 7 chr11 27945584 27945884 -122837669 + AluSx SINE Alu 1 299 -13 854 232 37 42 chr11 27945901 27946142 -122837411 - MIR SINE MIR -21 241 2 1966 166 61 0 chr11 27946208 27946552 -122837001 - MLT1A1 LTR MaLR 0 365 1 195 100 0 0 chr11 27946591 27946621 -122836932 + (TC)n Simple_repeat Simple_repeat 1 30 0 2376 110 0 0 chr11 27946621 27946931 -122836622 - AluSq SINE Alu -3 310 1 290 254 27 27 chr11 27946966 27947076 -122836477 - MER113 DNA MER1_type? -404 117 8 533 268 49 45 chr11 27947122 27947387 -122836166 - LTR33 LTR ERVL 0 521 256 383 339 56 22 chr11 27947421 27947601 -122835952 - LTR33 LTR ERVL -334 187 2 279 54 0 0 chr11 27948019 27948056 -122835497 + (CAG)n Simple_repeat Simple_repeat 1 37 0 328 356 55 0 chr11 27948228 27948374 -122835179 - MIR SINE MIR -1 261 108 1063 191 76 0 chr11 27948444 27948654 -122834899 + Charlie1a DNA MER1_type 1 226 -1229 245 313 127 52 chr11 27948786 27949006 -122834547 - HAL1b LINE L1 -701 647 445 1969 115 25 7 chr11 27949006 27949292 -122834261 + AluSg SINE Alu 1 291 -19 245 313 127 52 chr11 27949292 27949653 -122833900 - HAL1b LINE L1 -903 445 22 237 33 0 0 chr11 27949949 27949979 -122833574 + (TTG)n Simple_repeat Simple_repeat 1 30 0 20517 63 4 3 chr11 27950780 27953461 -122830092 + L1P LINE L1 578 3261 -2885 427 179 141 0 chr11 27953830 27953908 -122829645 - 5S rRNA rRNA -31 90 2 183 366 98 16 chr11 27955064 27955187 -122828366 - L2 LINE L2 -3 3269 3137 275 374 23 8 chr11 27955428 27955559 -122827994 - MIR SINE MIR -102 160 28 1006 332 46 32 chr11 27956108 27956867 -122826686 + L2 LINE L2 2403 3176 -137 299 73 13 280 chr11 27957186 27957231 -122826322 - L1MB5 LINE L1 0 6174 6194 2318 119 30 0 chr11 27957231 27957601 -122825952 + L1PA16 LINE L1 5777 6157 -9 299 73 13 280 chr11 27957601 27957705 -122825848 - L1MB5 LINE L1 21 6195 6065 352 138 15 0 chr11 27957719 27957784 -122825769 - L1MB5 LINE L1 -62 6112 6047 933 271 104 41 chr11 27957809 27958326 -122825227 + L1MC5 LINE L1 6981 7530 -431 5931 112 14 6 chr11 27958551 27959921 -122823632 + L1PA15 LINE L1 4788 6165 0 3935 235 26 15 chr11 27959926 27960973 -122822580 + L1MB5 LINE L1 4060 5117 -1029 1309 196 4 19 chr11 27960974 27961240 -122822313 + L1MB5 LINE L1 5905 6166 -8 192 40 0 0 chr11 27961862 27961887 -122821666 + (CAA)n Simple_repeat Simple_repeat 2 26 0 349 272 79 0 chr11 27962064 27962084 -122821469 - MLT1H LTR MaLR -2 547 530 3848 68 0 4 chr11 27962084 27962583 -122820970 + L1PA7 LINE L1 5657 6153 -1 349 272 79 0 chr11 27962583 27962676 -122820877 - MLT1H LTR MaLR -19 530 425 775 289 145 13 chr11 27962712 27963023 -122820530 - MLT1H LTR MaLR -195 354 3 300 298 60 42 chr11 27963881 27964049 -122819504 - MIR SINE MIR -46 216 46 213 341 72 30 chr11 27965083 27965250 -122818303 + L2 LINE L2 2712 2885 -429 45 62 0 0 chr11 27965648 27965728 -122817825 + AT_rich Low_complexity Low_complexity 1 80 0 926 284 152 14 chr11 27966272 27966620 -122816933 - MLT1K LTR MaLR -122 466 71 32 0 0 0 chr11 27966681 27966713 -122816840 + AT_rich Low_complexity Low_complexity 1 32 0 1347 245 100 59 chr11 27966930 27967763 -122815790 - L2 LINE L2 0 3313 2458 293 315 54 44 chr11 27968378 27968581 -122814972 + MIR SINE MIR 57 261 -1 1472 174 10 30 chr11 27970623 27970922 -122812631 - AluSx SINE Alu -19 293 1 348 293 13 0 chr11 27971085 27971160 -122812393 - L2 LINE L2 -11 3261 3186 238 294 44 0 chr11 27971226 27971294 -122812259 + MIR3 SINE MIR 89 159 -49 180 327 19 37 chr11 27971747 27971854 -122811699 + L3 LINE CR1 888 992 -585 379 327 102 6 chr11 27972523 27972700 -122810853 + MIR SINE MIR 41 233 -29 2564 55 3 0 chr11 27972763 27973071 -122810482 - AluY SINE Alu -1 310 2 2152 127 0 3 chr11 27974135 27974443 -122809110 - AluSq SINE Alu -6 307 1 360 357 174 22 chr11 27975360 27975682 -122807871 - L2 LINE L2 -1 3271 2901 369 275 163 31 chr11 27975717 27975876 -122807677 + MIR SINE MIR 28 207 -55 378 272 30 49 chr11 27975876 27976057 -122807496 - MER5A DNA MER1_type 0 189 1 190 318 0 30 chr11 27976057 27976116 -122807437 + MIR SINE MIR 202 258 -4 460 343 117 51 chr11 27976130 27976763 -122806790 - L2 LINE L2 -440 2874 2200 297 287 10 30 chr11 27977591 27977692 -122805861 + L2 LINE L2 2925 3023 -249 1576 259 10 13 chr11 27977701 27978094 -122805459 + L1 LINE L1 13 404 -5551 2564 258 101 33 chr11 27978112 27979242 -122804311 + L1 LINE L1 300 1065 -4969 225 0 0 0 chr11 27979242 27979267 -122804286 + (CAA)n Simple_repeat Simple_repeat 2 26 0 2564 258 101 33 chr11 27979267 27980530 -122803023 + L1 LINE L1 1065 2241 -3793 1361 205 3 13 chr11 27980526 27981136 -122802417 + L1 LINE L1 4073 4804 -1230 * 1703 146 41 39 chr11 27981135 27981497 -122802056 + L1MCa LINE L1 882 1244 -5182 5309 135 185 8 chr11 27981505 27982555 -122800998 + MER11B LTR ERVK 1 1236 0 1888 147 27 21 chr11 27982556 27983139 -122800414 + L1MCa LINE L1 1252 1927 -4499 186 43 0 0 chr11 27983567 27983590 -122799963 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 21 82 0 0 chr11 27984663 27984712 -122798841 + AT_rich Low_complexity Low_complexity 1 49 0 452 200 206 17 chr11 27984712 27984887 -122798666 - MER113 DNA MER1_type? -313 208 1 323 306 75 15 chr11 27984889 27985023 -122798530 - MIR SINE MIR -120 142 1 467 300 60 20 chr11 27985201 27985376 -122798177 - MER5A DNA MER1_type -5 184 2 195 360 40 0 chr11 27985754 27985829 -122797724 + L2 LINE L2 3236 3313 0 2939 269 47 37 chr11 27987199 27989005 -122794548 + L1M2a LINE L1 1621 3111 -4058 2177 105 13 3 chr11 27989011 27989316 -122794237 + AluSq SINE Alu 3 310 -3 2263 98 3 0 chr11 27989318 27989624 -122793929 + AluSp SINE Alu 1 307 -6 1564 263 78 73 chr11 27989630 27989951 -122793602 + L1ME LINE L1 78 396 -5684 2154 97 48 0 chr11 27989951 27990241 -122793312 + AluSx SINE Alu 1 304 -8 1564 263 78 73 chr11 27990241 27991506 -122792047 + L1ME LINE L1 396 1646 -4434 1667 206 0 3 chr11 27991506 27991797 -122791756 - AluJo SINE Alu -21 291 2 1564 263 78 73 chr11 27991797 27991855 -122791698 + L1ME LINE L1 1646 1702 -4378 1550 214 125 44 chr11 27991846 27992374 -122791179 + L1ME1 LINE L1 5592 6162 -4 * 3631 53 20 9 chr11 27992757 27993206 -122790347 + L1PA8 LINE L1 5719 6172 0 48 67 0 0 chr11 27993209 27993299 -122790254 + AT_rich Low_complexity Low_complexity 1 90 0 3894 160 61 18 chr11 27993381 27994099 -122789454 + L1MC1 LINE L1 5585 6333 0 287 198 12 37 chr11 27994450 27994531 -122789022 + GA-rich Low_complexity Low_complexity 1 79 0 2912 118 57 0 chr11 27995011 27995416 -122788137 - MSTA LTR MaLR 0 428 1 9472 171 22 24 chr11 27995416 27997069 -122786484 - MSTA-int LTR MaLR 0 1651 1 2705 124 86 0 chr11 27997069 27997463 -122786090 - MSTA LTR MaLR 0 428 1 245 348 79 42 chr11 27997517 27997871 -122785682 + L2 LINE L2 2347 2713 -601 1134 211 14 14 chr11 27998726 27998949 -122784604 - MER58A DNA MER1_type 0 224 2 203 316 59 59 chr11 27999007 27999143 -122784410 - L2 LINE L2 -11 3302 3167 205 383 0 0 chr11 27999165 27999246 -122784307 + L2 LINE L2 3188 3268 -4 2237 204 68 29 chr11 27999510 27999996 -122783557 + MLT1D LTR MaLR 1 505 0 198 284 30 30 chr11 28000602 28000669 -122782884 + MIR3 SINE MIR 105 171 -37 1823 154 48 3 chr11 28001006 28001299 -122782254 - AluJb SINE Alu -6 306 1 24 53 0 0 chr11 28001446 28001484 -122782069 + AT_rich Low_complexity Low_complexity 1 38 0 22 0 0 0 chr11 28002009 28002031 -122781522 + AT_rich Low_complexity Low_complexity 1 22 0 14845 47 6 0 chr11 28002073 28003875 -122779678 - L1P LINE L1 -3711 2435 623 796 43 0 0 chr11 28003873 28003965 -122779588 - L1P LINE L1 -6048 98 7 * 1102 119 57 23 chr11 28003970 28004147 -122779406 - MLT2A1 LTR ERVL -82 362 180 927 105 0 23 chr11 28004859 28004992 -122778561 - AluY SINE Alu -181 130 1 198 128 0 0 chr11 28005359 28005398 -122778155 + (TG)n Simple_repeat Simple_repeat 2 40 0 2275 105 3 3 chr11 28005720 28006025 -122777528 - AluSq SINE Alu -8 305 1 1009 234 120 58 chr11 28006667 28007228 -122776325 + MLT1H1 LTR MaLR 1 553 -2 1590 158 53 3 chr11 28007546 28007830 -122775723 + L1MD3 LINE L1 6725 7022 -973 327 229 237 0 chr11 28007879 28007997 -122775556 - MIR SINE MIR 0 262 117 515 347 59 9 chr11 28008739 28008961 -122774592 - MIR SINE MIR -10 252 20 572 268 101 31 chr11 28009240 28009263 -122774290 - MIR SINE MIR -4 258 238 1315 218 114 61 chr11 28009263 28009639 -122773914 + MSTD LTR MaLR 1 396 0 572 268 101 31 chr11 28009639 28009843 -122773710 - MIR SINE MIR -24 238 15 2328 103 0 0 chr11 28010130 28010430 -122773123 + AluSc SINE Alu 1 300 -9 2037 140 3 7 chr11 28010875 28011183 -122772370 + AluSx SINE Alu 6 312 0 206 357 0 12 chr11 28011279 28011363 -122772190 - L3 LINE CR1 -1 1576 1494 1895 145 10 10 chr11 28011517 28011821 -122771732 + AluJb SINE Alu 1 304 -8 425 186 32 57 chr11 28011823 28011947 -122771606 + MER103 DNA DNA 3 123 -43 797 233 49 22 chr11 28012269 28012492 -122771061 - MLT1H1 LTR MaLR 0 555 327 1539 242 37 5 chr11 28012595 28013000 -122770553 - L1MD3 LINE L1 -10 7985 7568 525 240 103 26 chr11 28013006 28013200 -122770353 - MLT1H1 LTR MaLR -290 259 10 2250 113 23 0 chr11 28013423 28013724 -122769829 + AluJb SINE Alu 1 308 -4 782 351 30 15 chr11 28013757 28014093 -122769460 + LTR16B LTR ERVL 44 384 -80 1771 109 29 0 chr11 28014109 28014383 -122769170 - L1MA6 LINE L1 0 6300 6019 2741 148 62 27 chr11 28014485 28014540 -122769013 - L1MA6 LINE L1 -292 5999 5945 1691 195 14 126 chr11 28014540 28014974 -122768579 - L1PA16 LINE L1 -242 5924 5600 5657 144 25 21 chr11 28014974 28016152 -122767401 - L1PA16 LINE L1 -13 6153 4959 1691 195 14 126 chr11 28016152 28016369 -122767184 - L1PA16 LINE L1 -566 5600 5360 447 216 0 10 chr11 28016369 28016466 -122767087 + LTR16B LTR ERVL 369 464 0 290 45 23 0 chr11 28016640 28016684 -122766869 + (TTA)n Simple_repeat Simple_repeat 3 47 0 3794 27 0 0 chr11 28016684 28017098 -122766455 - L1PA4 LINE L1 -18 6137 5724 787 11 0 0 chr11 28017098 28017192 -122766361 + L1P1 LINE L1 5338 5431 -724 194 250 0 0 chr11 28017575 28017623 -122765930 + L2 LINE L2 2652 2699 -615 2002 236 60 38 chr11 28017925 28018538 -122765015 + HsTC2 DNA Tc2 1272 1898 0 334 335 95 92 chr11 28018558 28018916 -122764637 + L2 LINE L2 2914 3272 0 189 107 0 0 chr11 28018994 28019022 -122764531 - MIR SINE MIR -121 141 114 601 281 72 25 chr11 28019087 28019322 -122764231 - MIR SINE MIR -3 259 14 1584 142 22 36 chr11 28019415 28019690 -122763863 + L1PA16 LINE L1 5894 6164 -2 417 273 58 36 chr11 28019803 28019942 -122763611 + MIR3 SINE MIR 16 157 -51 263 267 267 7 chr11 28020767 28020902 -122762651 + MIR SINE MIR 79 248 -14 1885 165 0 7 chr11 28020911 28021208 -122762345 + AluJo SINE Alu 1 295 -17 1494 28 0 39 chr11 28021486 28021665 -122761888 - L1PA4 LINE L1 -3 6152 5981 4537 30 2 0 chr11 28021766 28022418 -122761135 - L1PA4 LINE L1 -641 5514 4861 557 256 139 6 chr11 28022570 28022742 -122760811 + MIR SINE MIR 19 213 -49 248 354 38 0 chr11 28022820 28022899 -122760654 - MIR SINE MIR -110 98 17 189 315 70 70 chr11 28024169 28024426 -122759127 + L2 LINE L2 3034 3290 -23 312 339 51 8 chr11 28024830 28024948 -122758605 + MIR SINE MIR 16 138 -70 2148 104 4 0 chr11 28025613 28025920 -122757633 - AluSx SINE Alu 0 308 1 296 353 42 0 chr11 28026686 28026818 -122756735 + MIR SINE MIR 21 156 -64 365 58 19 0 chr11 28027130 28027182 -122756371 + (CTATT)n Simple_repeat Simple_repeat 2 54 0 2077 130 7 0 chr11 28027183 28027482 -122756071 - AluSx SINE Alu -9 303 3 858 90 14 14 chr11 28027768 28027912 -122755641 + (GAAA)n Simple_repeat Simple_repeat 1 144 0 948 259 40 27 chr11 28027928 28028229 -122755324 + L1ME1 LINE L1 5858 6162 -4 23 0 0 0 chr11 28028316 28028339 -122755214 + AT_rich Low_complexity Low_complexity 1 23 0 259 224 212 12 chr11 28028405 28028490 -122755063 - MER5A DNA MER1_type -80 109 8 257 267 137 43 chr11 28028558 28028719 -122754834 - MER117 DNA MER1_type -5 192 17 533 247 52 26 chr11 28029000 28029154 -122754399 + MIR SINE MIR 89 246 -16 2207 124 0 9 chr11 28029221 28029536 -122754017 + AluSx SINE Alu 1 312 0 187 300 78 0 chr11 28029618 28029708 -122753845 + MIR3 SINE MIR 101 197 -11 309 263 102 36 chr11 28030619 28030756 -122752797 + MER117 DNA MER1_type 52 197 0 271 255 5 0 chr11 28030774 28030851 -122752702 - MIR SINE MIR -67 141 78 1074 265 93 52 chr11 28031186 28031590 -122751963 - L1ME3A LINE L1 -219 5951 5565 713 216 57 101 chr11 28031590 28031817 -122751736 + MER20 DNA MER1_type 1 217 -2 1074 265 93 52 chr11 28031817 28032485 -122751068 - L1ME3A LINE L1 -605 5565 4960 629 277 77 0 chr11 28033108 28033303 -122750250 - MER63A DNA MER1_type 0 210 1 1018 289 71 44 chr11 28033513 28034243 -122749310 + L2 LINE L2 2568 3313 0 231 36 0 0 chr11 28034787 28034815 -122748738 + (TTTTC)n Simple_repeat Simple_repeat 3 30 0 2066 127 6 22 chr11 28034862 28035178 -122748375 - AluSp SINE Alu -2 311 1 835 50 0 0 chr11 28035420 28035521 -122748032 + L1PB1 LINE L1 6051 6151 0 1729 295 132 21 chr11 28035970 28036020 -122747533 + L2 LINE L2 1940 1983 -1331 2383 90 0 7 chr11 28036020 28036330 -122747223 - AluSg SINE Alu -2 308 1 1729 295 132 21 chr11 28036330 28037150 -122746403 + L2 LINE L2 1983 2907 -407 335 211 28 0 chr11 28037614 28037685 -122745868 + MIR SINE MIR 79 151 -111 1877 131 11 14 chr11 28038575 28038877 -122744676 - AluSx SINE Alu 0 301 1 29 0 0 0 chr11 28039141 28039170 -122744383 + AT_rich Low_complexity Low_complexity 1 29 0 224 178 0 44 chr11 28039945 28039990 -122743563 + polypyrimidine Low_complexity Low_complexity 3 45 0 24 32 0 0 chr11 28040494 28040525 -122743028 + AT_rich Low_complexity Low_complexity 1 31 0 462 307 135 8 chr11 28041148 28041415 -122742138 + L1MC/D LINE L1 5498 5798 -2010 280 326 67 34 chr11 28042492 28042670 -122740883 + MIR SINE MIR 17 200 -62 246 160 0 0 chr11 28043373 28043423 -122740130 + CT-rich Low_complexity Low_complexity 2 51 0 441 0 0 0 chr11 28043429 28043478 -122740075 + (CA)n Simple_repeat Simple_repeat 2 50 0 235 274 82 0 chr11 28044320 28044393 -122739160 + MIR SINE MIR 47 125 -137 24 67 0 0 chr11 28044807 28044852 -122738701 + AT_rich Low_complexity Low_complexity 1 45 0 358 264 141 62 chr11 28045992 28046219 -122737334 - HAL1 LINE L1 -1649 858 614 549 288 103 32 chr11 28046457 28046797 -122736756 + L2 LINE L2 2950 3313 0 205 309 0 0 chr11 28046802 28046857 -122736696 - L2 LINE L2 0 3272 3218 234 0 0 0 chr11 28046944 28046970 -122736583 + (CA)n Simple_repeat Simple_repeat 1 26 0 222 300 12 12 chr11 28047909 28047989 -122735564 - MIR SINE MIR -9 253 174 2415 105 0 0 chr11 28048279 28048585 -122734968 + AluSq SINE Alu 1 306 -7 2396 224 55 32 chr11 28048722 28049290 -122734263 + MLT1E LTR MaLR 13 593 0 2210 114 0 10 chr11 28049766 28050064 -122733489 - AluSq SINE Alu -18 295 1 499 297 108 0 chr11 28050123 28050355 -122733198 - MIR SINE MIR 0 262 6 476 283 81 39 chr11 28050358 28050792 -122732761 - L1ME4a LINE L1 -30 6091 5588 595 251 28 11 chr11 28051510 28051689 -122731864 - MIR SINE MIR -3 259 78 1948 205 37 60 chr11 28051842 28052289 -122731264 + MLT1D LTR MaLR 1 436 -69 1654 151 92 0 chr11 28052289 28052560 -122730993 - AluSx SINE Alu -16 296 1 1948 205 37 60 chr11 28052560 28052629 -122730924 + MLT1D LTR MaLR 436 505 0 2552 149 17 2 chr11 28053116 28053526 -122730027 + MSTB1 LTR MaLR 15 430 -2 294 179 18 0 chr11 28054447 28054503 -122729050 + LTR67 LTR ERVL 101 157 -400 276 222 0 0 chr11 28054460 28054514 -122729039 + MLT1J LTR MaLR 110 163 -348 * 509 265 99 99 chr11 28054517 28054909 -122728644 + MLT1L LTR MaLR 216 607 -8 2378 92 0 7 chr11 28055682 28055985 -122727568 - AluSq SINE Alu -12 301 1 230 200 0 50 chr11 28056107 28056187 -122727366 + T-rich Low_complexity Low_complexity 3 78 0 233 336 132 43 chr11 28056282 28056517 -122727036 + L2 LINE L2 3017 3272 0 1735 187 7 3 chr11 28056730 28057029 -122726524 + AluJo SINE Alu 1 300 -12 193 258 135 22 chr11 28057051 28057140 -122726413 + MIR SINE MIR 164 262 0 212 253 169 36 chr11 28058015 28058181 -122725372 - MIR SINE MIR -54 208 21 811 255 100 4 chr11 28058390 28058621 -122724932 + MIR SINE MIR 5 257 -5 339 253 11 0 chr11 28058660 28058755 -122724798 - MIR SINE MIR -109 153 58 290 329 36 21 chr11 28059417 28059557 -122723996 - L2 LINE L2 -1 3312 3171 201 213 21 0 chr11 28059928 28059975 -122723578 + (TA)n Simple_repeat Simple_repeat 1 48 0 243 0 0 0 chr11 28059983 28060010 -122723543 + (CA)n Simple_repeat Simple_repeat 2 28 0 420 284 97 7 chr11 28060022 28060177 -122723376 - MIR SINE MIR -77 185 17 753 253 18 31 chr11 28060350 28060579 -122722974 - MIR SINE MIR -25 237 12 245 262 90 41 chr11 28061827 28061949 -122721604 + MIR SINE MIR 20 147 -115 636 271 59 0 chr11 28062481 28062705 -122720848 - MIR SINE MIR -6 256 21 345 331 12 41 chr11 28062870 28063042 -122720511 + MIR3 SINE MIR 39 205 -3 187 286 71 0 chr11 28063042 28063098 -122720455 - MIR SINE MIR -3 259 200 623 301 25 13 chr11 28063148 28063384 -122720169 - MIR SINE MIR -17 245 7 2514 75 14 104 chr11 28064276 28064690 -122718863 + MER51B LTR ERV1 1 377 0 331 331 0 32 chr11 28065033 28065187 -122718366 + MIR SINE MIR 28 176 -86 43658 36 21 1 chr11 28065190 28071219 -122712334 + L1PA2 LINE L1 4 6155 0 436 354 31 9 chr11 28071775 28072004 -122711549 + MIR SINE MIR 13 246 -16 2043 153 29 6 chr11 28072006 28072353 -122711200 - THE1A LTR MaLR 0 355 1 4197 201 77 61 chr11 28123110 28124698 -122658855 - MER52A LTR ERV1 0 1755 2 316 347 8 8 chr11 28124768 28124889 -122658664 + L1MEd LINE L1 543 663 -5456 1664 284 23 6 chr11 28124962 28125487 -122658066 + L1ME LINE L1 36 569 -5827 543 220 49 2 chr11 28125485 28125655 -122657898 + L1ME2 LINE L1 5784 5962 -200 * 587 205 8 0 chr11 28125747 28125869 -122657684 + L1MA10 LINE L1 6205 6327 -7 443 254 138 5 chr11 28125949 28126166 -122657387 + L1ME LINE L1 4015 4260 -1955 25 65 0 0 chr11 28126371 28126417 -122657136 + AT_rich Low_complexity Low_complexity 1 46 0 980 291 79 22 chr11 28126440 28127517 -122656036 + L1ME LINE L1 4580 5718 -521 260 187 133 120 chr11 28127630 28127780 -122655773 - MER112 DNA MER1_type -106 154 3 380 262 60 18 chr11 28127782 28127950 -122655603 + L1ME LINE L1 5718 5892 -347 508 263 29 0 chr11 28127951 28128122 -122655431 + L1ME3A LINE L1 5776 5951 -219 2404 57 0 16 chr11 28128288 28128603 -122654950 - AluY SINE Alu -1 310 1 659 215 89 141 chr11 28129344 28129402 -122654151 + MLT1J LTR MaLR 11 70 -441 1694 176 29 4 chr11 28129402 28129701 -122653852 - AluJb SINE Alu 0 306 1 659 215 89 141 chr11 28129701 28130125 -122653428 + MLT1J LTR MaLR 70 469 -42 273 331 25 32 chr11 28130576 28130733 -122652820 + L2 LINE L2 2903 3058 -214 381 292 9 0 chr11 28130917 28131030 -122652523 + MIR SINE MIR 129 242 -20 228 135 0 0 chr11 28131776 28131813 -122651740 + (TG)n Simple_repeat Simple_repeat 2 38 0 485 202 243 29 chr11 28132429 28132602 -122650951 + MIR SINE MIR 53 262 0 478 315 101 5 chr11 28132572 28132791 -122650762 - MIR SINE MIR -21 241 2 * 434 204 21 11 chr11 28132815 28132908 -122650645 + MIR SINE MIR 83 176 -86 21 57 0 0 chr11 28135022 28135057 -122648496 + AT_rich Low_complexity Low_complexity 1 35 0 371 312 16 26 chr11 28135242 28135431 -122648122 - MER5A DNA MER1_type 0 189 3 28 48 0 0 chr11 28136214 28136256 -122647297 + AT_rich Low_complexity Low_complexity 1 42 0 1905 93 4 30 chr11 28136407 28136675 -122646878 + AluSx SINE Alu 34 294 -18 2581 159 8 8 chr11 28136824 28137295 -122646258 + L1MB5 LINE L1 5702 6172 -2 799 286 63 0 chr11 28137321 28137573 -122645980 - Charlie8 DNA MER1_type -2146 271 4 924 182 41 82 chr11 28138180 28138499 -122645054 - L1MD3 LINE L1 -14 7981 7676 585 217 36 39 chr11 28138474 28138736 -122644817 - L1MC4a LINE L1 -1449 6359 6083 * 1668 170 39 26 chr11 28138851 28139157 -122644396 + AluJo SINE Alu 1 310 -2 191 372 104 11 chr11 28140390 28140573 -122642980 + L2 LINE L2 1983 2182 -1132 193 305 0 17 chr11 28140705 28140764 -122642789 + L3 LINE CR1 1518 1575 -2 213 340 68 68 chr11 28141084 28141290 -122642263 - L2 LINE L2 -339 2975 2770 302 327 68 12 chr11 28141563 28141725 -122641828 - L2 LINE L2 -580 2734 2564 298 195 356 8 chr11 28141750 28141868 -122641685 - MER5B DNA MER1_type 0 178 20 649 166 55 43 chr11 28142867 28143030 -122640523 - MER97a DNA MER1_type? -729 165 1 1554 255 42 5 chr11 28143232 28143679 -122639874 + LTR16B LTR ERVL 1 464 0 35049 83 8 10 chr11 28143713 28145051 -122638502 + L1PA6 LINE L1 174 1513 -4641 2369 60 40 0 chr11 28145051 28145350 -122638203 + AluY SINE Alu 1 311 0 35049 83 8 10 chr11 28145350 28150010 -122633543 + L1PA6 LINE L1 1513 6154 0 615 278 64 0 chr11 28150240 28150413 -122633140 - MIR SINE MIR -13 249 66 2294 97 0 0 chr11 28150420 28150718 -122632835 - AluSq SINE Alu -15 298 1 5844 110 10 10 chr11 28151751 28152918 -122630635 - L1PA16 LINE L1 0 6166 5005 388 346 94 10 chr11 28153384 28153586 -122629967 + L2 LINE L2 3012 3230 -42 359 299 0 68 chr11 28154034 28154241 -122629312 + HAL1 LINE L1 5 197 -2310 348 293 105 8 chr11 28154260 28154393 -122629160 - HAL1 LINE L1 -1497 1010 865 1106 237 105 82 chr11 28154587 28155274 -122628279 + HAL1 LINE L1 606 1308 -1199 283 159 29 14 chr11 28155319 28155388 -122628165 + HAL1 LINE L1 2431 2500 -7 1908 150 3 42 chr11 28155515 28155822 -122627731 - AluJo SINE Alu -17 295 1 2204 265 114 124 chr11 28156053 28156338 -122627215 + L2 LINE L2 444 730 -2584 788 220 18 0 chr11 28156338 28156506 -122627047 - FAM SINE Alu -4 171 1 2204 265 114 124 chr11 28156506 28157389 -122626164 + L2 LINE L2 730 1620 -1694 2224 77 19 39 chr11 28157389 28157699 -122625854 - AluSq SINE Alu -9 304 1 2204 265 114 124 chr11 28157699 28158890 -122624663 + L2 LINE L2 1620 2780 -534 632 26 13 0 chr11 28159544 28159646 -122623907 - AluSg/x SINE Alu 0 308 206 21 0 0 0 chr11 28159660 28159681 -122623872 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr11 28159725 28159747 -122623806 + AT_rich Low_complexity Low_complexity 1 22 0 694 196 0 8 chr11 28159890 28160023 -122623530 - FLAM_C SINE Alu -1 132 1 2347 94 3 3 chr11 28160059 28160368 -122623185 + AluSc SINE Alu 1 309 0 1204 165 0 46 chr11 28160449 28160667 -122622886 + AluJo SINE Alu 87 294 -18 26 0 0 0 chr11 28160673 28160699 -122622854 + AT_rich Low_complexity Low_complexity 1 26 0 265 259 6 62 chr11 28163804 28163966 -122619587 + T-rich Low_complexity Low_complexity 4 156 0 393 309 29 43 chr11 28164142 28164250 -122619303 + L2 LINE L2 3134 3241 -31 2021 109 103 32 chr11 28164250 28164590 -122618963 + THE1B LTR MaLR 1 364 0 393 309 29 43 chr11 28164590 28164620 -122618933 + L2 LINE L2 3241 3270 -2 352 265 8 34 chr11 28164683 28164800 -122618753 - L1MC4 LINE L1 -1316 6726 6613 * 357 267 0 0 chr11 28164717 28164807 -122618746 + L1MC4 LINE L1 6614 6703 -1339 866 248 5 33 chr11 28164969 28165183 -122618370 + MER58A DNA MER1_type 2 209 -15 2321 91 0 3 chr11 28165535 28165831 -122617722 + AluSx SINE Alu 5 299 -13 252 391 9 0 chr11 28165976 28166086 -122617467 - L3 LINE CR1 -7 1570 1460 736 258 50 0 chr11 28166099 28166281 -122617272 - MIR SINE MIR -1 261 71 336 274 29 115 chr11 28166281 28166690 -122616863 + L1ME1 LINE L1 3313 3686 -2460 206 258 24 48 chr11 28166732 28166856 -122616697 + (CATATA)n Simple_repeat Simple_repeat 6 126 0 27 0 0 0 chr11 28166950 28166977 -122616576 + AT_rich Low_complexity Low_complexity 1 27 0 1961 220 61 54 chr11 28167006 28167700 -122615853 + L1ME1 LINE L1 4394 5095 -1051 6488 23 0 0 chr11 28167700 28168448 -122615105 - L1PA4 LINE L1 -3 6152 5405 1961 220 61 54 chr11 28168448 28168544 -122615009 + L1ME1 LINE L1 5095 5189 -957 1562 124 5 0 chr11 28168599 28168816 -122614737 + AluSg/x SINE Alu 74 291 -21 418 131 36 0 chr11 28168836 28168920 -122614633 + GA-rich Low_complexity Low_complexity 4 90 0 385 223 86 0 chr11 28168920 28169059 -122614494 + L1ME1 LINE L1 5188 5338 -808 2759 182 52 72 chr11 28169100 28169128 -122614425 + L1ME1 LINE L1 5349 5376 -958 1760 140 79 50 chr11 28169128 28169507 -122614046 + MLT1B LTR MaLR 1 390 0 2759 182 52 72 chr11 28169507 28170326 -122613227 + L1ME1 LINE L1 5376 6334 0 283 189 0 0 chr11 28170619 28170672 -122612881 + L2 LINE L2 3261 3313 0 28 29 0 0 chr11 28170767 28170802 -122612751 + AT_rich Low_complexity Low_complexity 1 35 0 183 80 0 0 chr11 28171212 28171237 -122612316 + (A)n Simple_repeat Simple_repeat 1 25 0 382 248 85 23 chr11 28172126 28172255 -122611298 - L2 LINE L2 -5 3308 3172 2069 146 3 0 chr11 28174519 28174821 -122608732 + AluSx SINE Alu 9 311 -1 348 301 26 9 chr11 28174832 28174945 -122608608 - L1MC4 LINE L1 -1318 6724 6610 37 23 0 0 chr11 28175863 28175907 -122607646 + AT_rich Low_complexity Low_complexity 1 44 0 23 33 0 0 chr11 28176018 28176048 -122607505 + AT_rich Low_complexity Low_complexity 1 30 0 226 289 89 44 chr11 28176267 28176357 -122607196 + MIR SINE MIR 34 127 -81 581 218 184 0 chr11 28176847 28176994 -122606559 - MIR SINE MIR -71 191 18 1441 148 72 48 chr11 28176995 28177285 -122606268 + AluJb SINE Alu 3 299 -13 449 276 16 24 chr11 28177336 28177459 -122606094 - MIR SINE MIR -124 138 17 228 254 0 0 chr11 28177718 28177777 -122605776 + (TA)n Simple_repeat Simple_repeat 2 60 0 415 264 86 7 chr11 28177979 28178119 -122605434 - MIR SINE MIR -55 207 57 2341 98 10 0 chr11 28178418 28178725 -122604828 - AluSp SINE Alu -3 310 1 29 60 0 0 chr11 28178796 28178846 -122604707 + AT_rich Low_complexity Low_complexity 1 50 0 444 116 0 0 chr11 28179273 28179359 -122604194 + (GGGTG)n Simple_repeat Simple_repeat 4 89 0 24 0 0 0 chr11 28179729 28179753 -122603800 + AT_rich Low_complexity Low_complexity 1 24 0 920 164 188 0 chr11 28179834 28180041 -122603512 + L1MD3 LINE L1 7741 7986 -9 539 161 107 0 chr11 28180056 28180168 -122603385 + L1MC1 LINE L1 5900 6023 -310 3210 62 14 0 chr11 28180190 28180611 -122602942 - MLT2A2 LTR ERVL -26 427 1 1137 164 63 34 chr11 28180611 28180849 -122602704 + L1MC1 LINE L1 6081 6325 -8 270 244 13 26 chr11 28181513 28181591 -122601962 - L2 LINE L2 -18 3254 3178 309 258 129 0 chr11 28181635 28181728 -122601825 - MIR SINE MIR -36 226 122 297 347 31 0 chr11 28181792 28181890 -122601663 + MIR SINE MIR 14 114 -148 586 306 22 22 chr11 28182003 28182232 -122601321 - MIR SINE MIR -31 231 3 180 0 0 0 chr11 28182757 28182777 -122600776 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 367 355 111 21 chr11 28184450 28184684 -122598869 + MIR SINE MIR 2 256 -6 1964 158 10 3 chr11 28184999 28185309 -122598244 + AluJb SINE Alu 1 312 0 240 57 94 19 chr11 28185318 28185371 -122598182 + GA-rich Low_complexity Low_complexity 3 59 0 210 190 0 35 chr11 28185557 28185615 -122597938 + (CATATA)n Simple_repeat Simple_repeat 6 61 0 23 0 0 0 chr11 28186227 28186250 -122597303 + AT_rich Low_complexity Low_complexity 1 23 0 194 284 149 50 chr11 28186540 28186681 -122596872 + MIR SINE MIR 103 257 -5 * 550 217 39 23 chr11 28186658 28186787 -122596766 - MIR SINE MIR -50 212 82 1757 191 14 20 chr11 28186808 28187165 -122596388 + MLT1A1 LTR MaLR 5 359 -6 2219 129 21 21 chr11 28187258 28187631 -122595922 + THE1C LTR MaLR 1 373 -2 822 264 5 10 chr11 28187742 28187950 -122595603 - LTR33 LTR ERVL -271 250 44 1740 76 5 5 chr11 28188204 28188427 -122595126 + AluSp SINE Alu 1 223 -90 366 270 30 10 chr11 28188427 28188527 -122595026 - LTR33 LTR ERVL -366 155 54 461 65 65 0 chr11 28188571 28188648 -122594905 + AluSp SINE Alu 228 309 -4 203 194 0 0 chr11 28189003 28189039 -122594514 + (TTA)n Simple_repeat Simple_repeat 2 37 0 603 151 50 0 chr11 28189696 28189815 -122593738 - L1MA9 LINE L1 -38 6274 6150 2233 128 50 39 chr11 28189928 28190288 -122593265 + THE1B LTR MaLR 1 364 0 1980 169 156 5 chr11 28190393 28190765 -122592788 - MSTA LTR MaLR 0 428 1 768 303 36 0 chr11 28191264 28191485 -122592068 + L2 LINE L2 2615 2843 -471 * 799 265 23 18 chr11 28191464 28191683 -122591870 + L2 LINE L2 3092 3311 -2 261 294 15 0 chr11 28192380 28192448 -122591105 + MIR SINE MIR 48 116 -92 453 217 66 9 chr11 28192449 28192555 -122590998 + L2 LINE L2 3199 3310 -3 287 326 56 0 chr11 28192938 28193027 -122590526 + MIR3 SINE MIR 86 179 -29 440 275 86 57 chr11 28193168 28193602 -122589951 - MLT1H1 LTR MaLR -24 531 30 2419 131 95 8 chr11 28193669 28194059 -122589494 - MSTA LTR MaLR 0 428 5 4137 163 82 15 chr11 28194595 28195116 -122588437 + L1PA13 LINE L1 4776 5260 -903 202 56 56 0 chr11 28195116 28195152 -122588401 + A-rich Low_complexity Low_complexity 3 40 0 4137 163 82 15 chr11 28195152 28195920 -122587633 + L1PA13 LINE L1 5260 6152 -11 630 252 29 33 chr11 28195988 28196017 -122587536 - MIR SINE MIR -41 221 193 3031 107 12 16 chr11 28196017 28196447 -122587106 - MSTA LTR MaLR 0 428 1 630 252 29 33 chr11 28196447 28196610 -122586943 - MIR SINE MIR -69 193 31 204 289 0 0 chr11 28196598 28196650 -122586903 - L2 LINE L2 0 3272 3221 * 202 333 0 0 chr11 28198591 28198663 -122584890 - L2 LINE L2 -954 2360 2289 550 307 0 22 chr11 28198784 28198963 -122584590 + L3 LINE CR1 639 813 -764 411 262 0 9 chr11 28198964 28199071 -122584482 + L3 LINE CR1 1183 1288 -289 1016 278 81 49 chr11 28199177 28199342 -122584211 - L2 LINE L2 -1 3312 3154 2214 104 0 7 chr11 28199342 28199639 -122583914 + AluSx SINE Alu 1 295 -17 1016 278 81 49 chr11 28199639 28200216 -122583337 - L2 LINE L2 -159 3154 2536 260 275 14 99 chr11 28200808 28200950 -122582603 + L2 LINE L2 2672 2801 -513 436 236 63 24 chr11 28200950 28201077 -122582476 - MER94 DNA DNA 0 134 3 259 300 115 0 chr11 28201116 28201246 -122582307 + L2 LINE L2 2829 2973 -340 204 40 0 0 chr11 28201270 28201295 -122582258 + (TCC)n Simple_repeat Simple_repeat 1 25 0 189 147 0 0 chr11 28201638 28201672 -122581881 + (TA)n Simple_repeat Simple_repeat 1 34 0 449 163 31 108 chr11 28201721 28201810 -122581743 - L1MB8 LINE L1 -167 5995 5920 2007 97 3 88 chr11 28201810 28202130 -122581423 + AluSg1 SINE Alu 1 293 -16 449 163 31 108 chr11 28202130 28202187 -122581366 - L1MB8 LINE L1 -242 5920 5860 32794 95 5 11 chr11 28202196 28207940 -122575613 - L1PA7 LINE L1 0 6469 739 536 273 78 75 chr11 28207943 28208043 -122575510 - MARNA DNA Mariner -154 432 334 1569 169 29 7 chr11 28208043 28208351 -122575202 - AluJb SINE Alu 0 314 1 536 273 78 75 chr11 28208351 28208608 -122574945 - MARNA DNA Mariner -252 334 73 289 215 31 0 chr11 28209920 28209985 -122573568 + MER112 DNA MER1_type 7 73 -187 209 265 6 161 chr11 28210239 28210401 -122573152 - MIR3 SINE MIR -54 154 18 986 193 34 42 chr11 28210464 28210703 -122572850 + MLT1A2 LTR MaLR 138 374 0 207 274 20 0 chr11 28210914 28210965 -122572588 + L2 LINE L2 3209 3260 -12 304 303 156 18 chr11 28211023 28211132 -122572421 + L2 LINE L2 3139 3262 -10 414 274 19 13 chr11 28211597 28211754 -122571799 + L1ME4a LINE L1 5960 6117 -4 279 357 7 0 chr11 28211770 28211910 -122571643 + L2 LINE L2 2359 2499 -815 1089 203 0 24 chr11 28211942 28212149 -122571404 - MLT1A2 LTR MaLR 0 374 173 616 201 238 73 chr11 28212177 28212503 -122571050 - MLT1G1 LTR MaLR -29 521 161 578 211 32 68 chr11 28212505 28212695 -122570858 - L1MC5 LINE L1 -600 7361 7179 395 206 141 0 chr11 28213529 28213621 -122569932 - MER5A DNA MER1_type -77 112 8 203 330 87 17 chr11 28214058 28214173 -122569380 - MIR SINE MIR -75 187 65 492 234 120 25 chr11 28214420 28214578 -122568975 + MIR SINE MIR 90 262 0 1925 137 22 29 chr11 28214859 28215173 -122568380 - AluSx SINE Alu 0 312 1 258 353 0 39 chr11 28215223 28215379 -122568174 - MIR SINE MIR -46 216 67 294 164 45 15 chr11 28215446 28215513 -122568040 + MER116 DNA Mariner 12 80 0 367 308 122 6 chr11 28215517 28215689 -122567864 - MIR SINE MIR -58 204 13 566 310 49 5 chr11 28215793 28215977 -122567576 - MIR SINE MIR -60 202 11 637 216 72 7 chr11 28215991 28216130 -122567423 + MER5B DNA MER1_type 31 178 0 942 262 125 44 chr11 28217803 28218748 -122564805 - L1MEd LINE L1 -978 5151 4131 1899 131 98 12 chr11 28218830 28219050 -122564503 + L1PA16 LINE L1 5810 6069 -97 2063 92 0 0 chr11 28219050 28219310 -122564243 + AluSc SINE Alu 37 296 -13 1899 131 98 12 chr11 28219310 28219417 -122564136 + L1PA16 LINE L1 6069 6165 -1 342 191 108 102 chr11 28219455 28219612 -122563941 - L1MEd LINE L1 -2126 4003 3846 269 255 169 58 chr11 28219831 28220074 -122563479 - L1MEd LINE L1 -2605 3524 3255 245 312 104 35 chr11 28220333 28220603 -122562950 + LTR16A LTR ERVL 166 457 0 501 260 43 95 chr11 28220611 28220831 -122562722 - L1MEd LINE L1 -2962 3167 2966 1984 111 9 22 chr11 28220831 28221146 -122562407 - AluSx SINE Alu 0 312 2 501 260 43 95 chr11 28221146 28221229 -122562324 - L1MEd LINE L1 -3163 2966 2880 679 318 52 10 chr11 28221229 28221570 -122561983 + MLT1I LTR MaLR 1 408 -1 300 309 23 57 chr11 28221611 28221647 -122561906 - L1MEd LINE L1 -3279 2850 2814 2416 69 10 7 chr11 28221647 28221950 -122561603 - AluSp SINE Alu -9 304 1 300 309 23 57 chr11 28221950 28222088 -122561465 - L1MEd LINE L1 -3315 2814 2682 236 236 13 191 chr11 28222333 28222490 -122561063 - L1MEd LINE L1 -5510 609 481 27 0 0 26 chr11 28222837 28222861 -122560692 + AT_rich Low_complexity Low_complexity 1 24 -13 201 39 0 0 chr11 28222861 28222887 -122560666 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 1988 136 14 0 chr11 28222887 28223169 -122560384 - AluSx SINE Alu -26 286 1 27 0 0 26 chr11 28223169 28223186 -122560367 + AT_rich Low_complexity Low_complexity 22 37 0 493 328 150 12 chr11 28223846 28224093 -122559460 + L2 LINE L2 2992 3272 0 625 247 44 85 chr11 28225103 28225215 -122558338 + MIR SINE MIR 11 126 -136 2667 103 41 0 chr11 28225215 28225556 -122557997 - LTR18A LTR ERVL 0 357 3 625 247 44 85 chr11 28225556 28225690 -122557863 + MIR SINE MIR 126 249 -13 469 314 159 14 chr11 28226626 28226846 -122556707 + L3 LINE CR1 1303 1554 -23 1859 127 84 0 chr11 28227218 28227502 -122556051 + AluSx SINE Alu 1 308 -4 449 77 0 86 chr11 28227514 28227631 -122555922 + (GGGGA)n Simple_repeat Simple_repeat 4 110 0 397 226 157 88 chr11 28227876 28228035 -122555518 + MER5A DNA MER1_type 14 183 -6 2427 157 33 19 chr11 28228088 28228508 -122555045 + MSTB LTR MaLR 1 426 0 1966 145 0 3 chr11 28229659 28229941 -122553612 - AluSx SINE Alu -31 281 1 341 321 64 14 chr11 28230648 28230828 -122552725 - MIR3 SINE MIR -61 147 3 3112 129 0 5 chr11 28230859 28231286 -122552267 - MSTC LTR MaLR -1 427 3 28 29 0 0 chr11 28231958 28231993 -122551560 + AT_rich Low_complexity Low_complexity 1 35 0 1080 33 0 0 chr11 28231993 28232113 -122551440 - L1PA5 LINE L1 -8 6146 6027 381 300 75 0 chr11 28232177 28232297 -122551256 + L2 LINE L2 3181 3309 -4 406 234 47 0 chr11 28233236 28233343 -122550210 + MER113 DNA MER1_type? 6 117 -404 2475 35 41 0 chr11 28233451 28233741 -122549812 + AluY SINE Alu 1 302 -9 473 300 119 55 chr11 28234095 28234625 -122548928 - L1M2 LINE L1 -5840 1009 446 386 139 12 0 chr11 28234643 28234729 -122548824 + (GGGTG)n Simple_repeat Simple_repeat 3 89 0 443 232 53 33 chr11 28234884 28235035 -122548518 + L1ME4a LINE L1 5956 6109 -12 614 205 83 26 chr11 28235711 28235867 -122547686 + L1MC4 LINE L1 7878 8042 0 219 191 0 48 chr11 28236328 28236370 -122547183 - L2 LINE L2 -94 3219 3180 290 340 97 34 chr11 28236449 28237060 -122546493 + L2 LINE L2 2203 2851 -463 250 304 29 0 chr11 28237187 28237256 -122546297 + MIR SINE MIR 16 86 -176 1356 85 0 0 chr11 28237259 28237436 -122546117 - AluY SINE Alu -2 309 133 405 284 57 35 chr11 28237456 28237597 -122545956 + MIR SINE MIR 106 249 -13 222 381 68 0 chr11 28237685 28237803 -122545750 + L2 LINE L2 3141 3266 -6 202 271 0 0 chr11 28238835 28238883 -122544670 - L2 LINE L2 -3 3310 3263 361 316 86 7 chr11 28239767 28239906 -122543647 + MIR3 SINE MIR 9 158 -50 329 227 13 113 chr11 28243038 28243188 -122540365 + L1MC5 LINE L1 7732 7866 -95 240 245 49 43 chr11 28243292 28243413 -122540140 + MIR SINE MIR 38 162 -62 23 33 0 0 chr11 28245267 28245297 -122538256 + AT_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr11 28247115 28247139 -122536414 + AT_rich Low_complexity Low_complexity 1 24 0 304 310 145 0 chr11 28247333 28247478 -122536075 + MIR SINE MIR 91 256 -6 210 278 104 62 chr11 28247550 28247694 -122535859 - MIR SINE MIR -56 206 57 334 220 318 8 chr11 28249130 28249262 -122534291 - MER5A DNA MER1_type -1 188 16 1793 183 0 16 chr11 28249633 28249945 -122533608 - AluJo SINE Alu -5 307 1 279 107 36 18 chr11 28250295 28250351 -122533202 + MIR SINE MIR 85 141 -67 1930 150 0 7 chr11 28250649 28250942 -122532611 - AluJb SINE Alu -21 291 1 1892 142 0 43 chr11 28252783 28253108 -122530445 + AluJo SINE Alu 2 312 0 235 291 8 102 chr11 28253138 28253265 -122530288 + L2 LINE L2 3155 3269 -3 988 238 9 5 chr11 28253311 28253534 -122530019 - MER58A DNA MER1_type 0 224 1 1540 103 9 5 chr11 28253758 28253971 -122529582 - AluSp SINE Alu -14 299 86 184 244 12 12 chr11 28254159 28254245 -122529308 + GA-rich Low_complexity Low_complexity 2 87 0 214 238 20 20 chr11 28255234 28255335 -122528218 + (TA)n Simple_repeat Simple_repeat 2 102 0 1798 171 45 9 chr11 28255601 28255935 -122527618 + MER7A DNA MER2_type 2 345 -1 23 54 0 0 chr11 28258145 28258182 -122525371 + AT_rich Low_complexity Low_complexity 1 37 0 1837 120 41 57 chr11 28259193 28259510 -122524043 + AluJb SINE Alu 1 312 0 2358 104 0 0 chr11 28260517 28260826 -122522727 + AluSc SINE Alu 1 309 0 23 0 0 0 chr11 28264901 28264924 -122518629 + AT_rich Low_complexity Low_complexity 1 23 0 639 341 36 50 chr11 28264982 28265498 -122518055 - L2 LINE L2 -46 3267 2766 210 270 22 67 chr11 28268235 28268324 -122515229 - MER5A DNA MER1_type -98 91 7 21 36 0 0 chr11 28269015 28269043 -122514510 + AT_rich Low_complexity Low_complexity 1 28 0 299 283 54 0 chr11 28269645 28269737 -122513816 - MIR SINE MIR -83 125 29 45 34 0 0 chr11 28271297 28271356 -122512197 + AT_rich Low_complexity Low_complexity 1 59 0 190 160 60 60 chr11 28271433 28271483 -122512070 - L2 LINE L2 0 3313 3264 2034 99 0 0 chr11 28272164 28272449 -122511104 - AluSx SINE Alu 0 317 33 247 289 7 0 chr11 28273860 28273939 -122509614 - MIR SINE MIR -84 124 41 30 0 0 0 chr11 28274303 28274333 -122509220 + AT_rich Low_complexity Low_complexity 1 30 0 1946 131 3 34 chr11 28276675 28276996 -122506557 - AluSq SINE Alu -2 311 1 2291 85 3 16 chr11 28277292 28277598 -122505955 - AluSx SINE Alu -10 302 1 1369 140 44 18 chr11 28277823 28278052 -122505501 + MER46A DNA MER2_type 1 235 -1 2319 93 20 0 chr11 28278276 28278576 -122504977 - AluSx SINE Alu -6 306 1 204 274 59 0 chr11 28279320 28279371 -122504182 - L2 LINE L2 -6 3307 3254 675 263 103 38 chr11 28279833 28280354 -122503199 + MLT1L LTR MaLR 4 610 -5 824 309 29 63 chr11 28280362 28280854 -122502699 + MLT1J LTR MaLR 29 503 -8 1694 139 105 0 chr11 28280967 28281234 -122502319 + AluJb SINE Alu 1 295 -17 263 250 62 0 chr11 28281429 28281509 -122502044 + L1ME4a LINE L1 5947 6031 -90 498 265 110 85 chr11 28282424 28282824 -122500729 + MLT1K LTR MaLR 179 588 0 316 325 131 57 chr11 28282997 28283631 -122499922 + L2 LINE L2 1963 2643 -671 405 209 137 43 chr11 28284155 28284294 -122499259 + MIR SINE MIR 37 188 -74 368 305 1 11 chr11 28284835 28284945 -122498608 + MIR SINE MIR 49 158 -50 441 264 84 17 chr11 28285120 28285298 -122498255 + MIR SINE MIR 1 190 -72 1171 254 58 30 chr11 28285349 28285778 -122497775 + L1MC4 LINE L1 7588 8028 -14 206 236 139 28 chr11 28287285 28287357 -122496196 + L2 LINE L2 2394 2473 -841 343 354 91 48 chr11 28287408 28287740 -122495813 + L2 LINE L2 2814 3171 -101 1158 142 19 33 chr11 28287740 28287951 -122495602 + MER3 DNA MER1_type 1 208 -1 343 354 91 48 chr11 28287951 28288056 -122495497 + L2 LINE L2 3171 3270 -2 24 32 0 0 chr11 28288391 28288422 -122495131 + AT_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chr11 28489596 28489620 -122293933 + GC_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr11 28489642 28489670 -122293883 + GC_rich Low_complexity Low_complexity 1 28 0 384 59 0 0 chr11 28490453 28490504 -122293049 + (TGG)n Simple_repeat Simple_repeat 2 52 0 2557 61 3 3 chr11 28491296 28491607 -122291946 + AluSp SINE Alu 1 311 -2 321 241 219 22 chr11 28491871 28492008 -122291545 - MIR3 SINE MIR -22 186 23 1721 116 45 71 chr11 28492130 28492441 -122291112 - AluSx SINE Alu -9 303 1 301 274 53 21 chr11 28492471 28492566 -122290987 - MER5A DNA MER1_type -86 103 6 718 128 8 45 chr11 28492841 28492974 -122290579 - L1MB3 LINE L1 -298 5885 5758 369 251 30 96 chr11 28493936 28494103 -122289450 - L3 LINE CR1 -89 1488 1333 1744 134 0 33 chr11 28494137 28494412 -122289141 - AluJo SINE Alu -7 305 40 482 219 61 79 chr11 28494707 28494935 -122288618 + MIR SINE MIR 4 227 -35 2144 200 41 52 chr11 28496053 28496288 -122287265 + L1ME1 LINE L1 5581 5817 -349 1802 178 3 10 chr11 28496288 28496592 -122286961 + AluJo SINE Alu 1 302 -10 2144 200 41 52 chr11 28496592 28496917 -122286636 + L1ME1 LINE L1 5817 6135 -31 2309 102 0 31 chr11 28496958 28497281 -122286272 - AluSq SINE Alu 0 313 1 1920 108 0 0 chr11 28497920 28498171 -122285382 - AluSg SINE Alu -13 297 47 2186 116 3 7 chr11 28498543 28498845 -122284708 - AluSx SINE Alu -11 301 1 2223 98 0 7 chr11 28499045 28499342 -122284211 + AluSg1 SINE Alu 1 295 -14 356 216 62 52 chr11 28499411 28499508 -122284045 - MIR SINE MIR -68 140 43 410 246 6 123 chr11 28500366 28500545 -122283008 - MIR3 SINE MIR -5 203 46 200 262 238 0 chr11 28501203 28501287 -122282266 - L2 LINE L2 0 3272 3169 709 245 37 6 chr11 28503407 28503570 -122279983 - MER5B DNA MER1_type -2 176 9 209 288 106 0 chr11 28503558 28503624 -122279929 - MIR3 SINE MIR -20 188 116 * 1035 218 63 0 chr11 28504038 28504244 -122279309 + MER58A DNA MER1_type 1 219 -5 422 271 34 77 chr11 28504274 28504481 -122279072 - HAL1b LINE L1 -872 476 279 974 266 78 82 chr11 28505002 28505426 -122278127 + MLT1J LTR MaLR 1 424 -87 846 83 25 8 chr11 28505426 28505547 -122278006 - L1MB8 LINE L1 -6 6172 6050 974 266 78 82 chr11 28505547 28505633 -122277920 + MLT1J LTR MaLR 424 509 -2 886 140 28 14 chr11 28506328 28506471 -122277082 + AluSg/x SINE Alu 143 287 -23 204 125 0 0 chr11 28506614 28506646 -122276907 + (TA)n Simple_repeat Simple_repeat 1 32 0 1059 162 6 0 chr11 28506653 28506820 -122276733 + AluJb SINE Alu 132 299 -13 421 293 37 37 chr11 28506823 28506987 -122276566 - MIR3 SINE MIR -21 187 24 22 0 0 0 chr11 28506989 28507011 -122276542 + AT_rich Low_complexity Low_complexity 1 22 0 21 71 0 0 chr11 28507375 28507417 -122276136 + AT_rich Low_complexity Low_complexity 1 42 0 240 86 0 0 chr11 28507615 28507650 -122275903 + (TG)n Simple_repeat Simple_repeat 1 35 0 414 273 55 0 chr11 28508124 28508234 -122275319 + L2 LINE L2 3185 3300 -13 21 0 0 0 chr11 28508240 28508261 -122275292 + AT_rich Low_complexity Low_complexity 1 21 0 284 232 112 48 chr11 28508339 28508464 -122275089 + L2 LINE L2 2943 3075 -238 332 290 129 31 chr11 28508495 28508832 -122274721 - L2 LINE L2 -12 3301 2743 2087 102 13 58 chr11 28508900 28509213 -122274340 + AluSx SINE Alu 1 299 -13 467 275 123 0 chr11 28509452 28509623 -122273930 + L2 LINE L2 3122 3313 0 787 151 34 0 chr11 28509813 28509932 -122273621 - FLAM_C SINE Alu -19 124 2 21 0 0 0 chr11 28509933 28509954 -122273599 + AT_rich Low_complexity Low_complexity 1 21 0 1928 123 11 104 chr11 28510678 28511044 -122272509 - MER1B DNA MER1_type -3 334 3 274 108 0 0 chr11 28511325 28511362 -122272191 - Alu SINE Alu -11 291 255 267 305 158 0 chr11 28511615 28511697 -122271856 - L2 LINE L2 -39 3274 3180 2107 113 16 13 chr11 28511724 28512033 -122271520 + AluSq SINE Alu 1 310 -3 334 296 114 28 chr11 28512162 28512338 -122271215 - L2 LINE L2 -416 2898 2708 2714 153 42 24 chr11 28512837 28513294 -122270259 - MLT1C LTR MaLR -2 465 1 1547 127 3 124 chr11 28513591 28513795 -122269758 - AluSp SINE Alu -10 303 151 1966 136 0 7 chr11 28513795 28514081 -122269472 - AluSx SINE Alu -28 284 1 1547 127 3 124 chr11 28514081 28514198 -122269355 - AluSp SINE Alu -162 151 21 330 111 0 0 chr11 28514198 28514243 -122269310 - AluSp SINE Alu -257 45 1 23 33 0 0 chr11 28514458 28514488 -122269065 + AT_rich Low_complexity Low_complexity 1 30 0 646 278 148 0 chr11 28515139 28515348 -122268205 - MIR SINE MIR -21 241 2 2181 98 0 19 chr11 28516141 28516458 -122267095 + AluY SINE Alu 1 311 0 183 80 0 0 chr11 28516694 28516719 -122266834 + (A)n Simple_repeat Simple_repeat 1 25 0 827 165 82 38 chr11 28516787 28516945 -122266608 + FRAM SINE Alu 1 165 -1 1264 160 5 0 chr11 28517090 28517284 -122266269 + AluSg/x SINE Alu 97 291 -19 879 128 0 30 chr11 28518408 28518541 -122265012 + FLAM_C SINE Alu 5 133 0 1729 102 18 0 chr11 28518704 28518930 -122264623 - MER30 DNA MER1_type 0 230 1 1990 104 54 17 chr11 28519021 28519319 -122264234 - AluSx SINE Alu -3 309 1 229 259 74 25 chr11 28519925 28520006 -122263547 - MIR3 SINE MIR -36 172 88 1890 138 0 58 chr11 28520137 28520448 -122263105 + AluJb SINE Alu 1 293 -19 2510 78 0 0 chr11 28520689 28520998 -122262555 + AluSq SINE Alu 1 309 -4 184 286 12 36 chr11 28523522 28523606 -122259947 - MIR3 SINE MIR -7 201 120 222 219 0 53 chr11 28523848 28523962 -122259591 + GA-rich Low_complexity Low_complexity 3 110 0 287 357 27 18 chr11 28524172 28524284 -122259269 - MER91A DNA MER1_type -82 114 2 2528 146 93 37 chr11 28524766 28525073 -122258480 - MLT2B1 LTR ERVL -7 513 168 2177 119 0 22 chr11 28525073 28525405 -122258148 - AluSx SINE Alu 0 312 1 2528 146 93 37 chr11 28525405 28525583 -122257970 - MLT2B1 LTR ERVL -352 168 1 585 295 65 54 chr11 28525733 28525771 -122257782 - L1ME LINE L1 -500 5670 5634 1704 151 6 63 chr11 28525771 28526089 -122257464 + AluJo SINE Alu 2 301 -11 585 295 65 54 chr11 28526089 28526436 -122257117 - L1ME LINE L1 -536 5634 5281 1141 211 48 0 chr11 28526438 28526647 -122256906 - MER58A DNA MER1_type -2 222 4 1398 187 30 16 chr11 28526695 28527000 -122256553 - AluJo SINE Alu -3 309 1 2504 59 7 0 chr11 28527098 28527401 -122256152 - AluSp SINE Alu -8 305 1 216 97 0 0 chr11 28527689 28527702 -122255851 + (TG)n Simple_repeat Simple_repeat 1 13 -351 2044 111 7 20 chr11 28527702 28528008 -122255545 + AluSg SINE Alu 1 302 -8 216 97 0 0 chr11 28528008 28528022 -122255531 + (TG)n Simple_repeat Simple_repeat 12 364 0 216 97 0 0 chr11 28528022 28528053 -122255500 + (TG)n Simple_repeat Simple_repeat 2 32 0 309 109 0 0 chr11 28528053 28528099 -122255454 + (CATA)n Simple_repeat Simple_repeat 2 47 0 1900 125 57 0 chr11 28528107 28528388 -122255165 + AluSx SINE Alu 2 298 -14 2166 105 16 0 chr11 28529209 28529513 -122254040 - AluSp SINE Alu -3 310 2 198 0 0 0 chr11 28530185 28530207 -122253346 + (A)n Simple_repeat Simple_repeat 1 22 0 267 79 0 0 chr11 28530554 28530592 -122252961 + (TC)n Simple_repeat Simple_repeat 2 39 0 2397 87 3 13 chr11 28530772 28531082 -122252471 - AluSx SINE Alu -5 307 1 262 273 70 39 chr11 28531175 28531303 -122252250 - MER5A DNA MER1_type -22 167 36 1175 273 120 10 chr11 28531355 28531755 -122251798 - LTR16B LTR ERVL -6 458 15 298 304 170 12 chr11 28531822 28531993 -122251560 - L3 LINE CR1 -3 1574 1377 887 111 17 0 chr11 28532046 28532163 -122251390 + FLAM_C SINE Alu 1 119 -24 231 61 0 0 chr11 28532165 28532198 -122251355 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 306 67 0 0 chr11 28533020 28533065 -122250488 + (TC)n Simple_repeat Simple_repeat 2 46 0 1857 236 36 41 chr11 28533381 28533937 -122249616 - L1MD3 LINE L1 -1 7994 7442 3753 223 49 63 chr11 28533981 28534987 -122248566 - L1MC4a LINE L1 -748 5398 5351 1524 202 10 3 chr11 28534987 28535279 -122248274 - AluJo SINE Alu -18 294 1 3753 223 49 63 chr11 28535279 28535732 -122247821 - L1MC4a LINE L1 -795 5351 4893 * 4262 163 23 13 chr11 28535727 28536096 -122247457 - L1PA16 LINE L1 -209 5957 5593 1980 131 3 20 chr11 28536096 28536393 -122247160 + AluSx SINE Alu 1 292 -20 4262 163 23 13 chr11 28536393 28537506 -122246047 - L1PA16 LINE L1 -573 5593 4469 227 235 59 0 chr11 28537725 28537776 -122245777 - MIR SINE MIR -79 183 130 209 250 0 0 chr11 28537995 28538039 -122245514 + L3 LINE CR1 1068 1111 -466 302 340 38 13 chr11 28538049 28538208 -122245345 + MER117 DNA MER1_type 4 166 -31 234 0 0 0 chr11 28538354 28538380 -122245173 + (TTG)n Simple_repeat Simple_repeat 2 27 0 330 228 89 49 chr11 28538408 28538531 -122245022 + L3 LINE CR1 1291 1418 -159 241 225 0 0 chr11 28538778 28538818 -122244735 + L2 LINE L2 3219 3258 -14 198 0 0 0 chr11 28538819 28538841 -122244712 + (TGAA)n Simple_repeat Simple_repeat 1 22 0 568 259 0 0 chr11 28539205 28539321 -122244232 + L2 LINE L2 3198 3313 0 297 274 88 18 chr11 28540616 28540729 -122242824 + L2 LINE L2 3192 3312 -1 192 125 0 0 chr11 28541008 28541040 -122242513 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1147 273 78 44 chr11 28541475 28541908 -122241645 - LTR16A LTR ERVL 0 450 3 7152 50 6 0 chr11 28542023 28543119 -122240434 - L1PA7 LINE L1 0 6154 5057 396 0 0 0 chr11 28543249 28543293 -122240260 + (TG)n Simple_repeat Simple_repeat 2 45 0 1527 183 51 70 chr11 28543303 28543389 -122240164 + MLT1A1 LTR MaLR 1 87 -278 2288 104 7 0 chr11 28543389 28543688 -122239865 + AluSq SINE Alu 1 301 -12 1527 183 51 70 chr11 28543688 28543973 -122239580 + MLT1A1 LTR MaLR 87 365 0 2175 132 34 14 chr11 28544578 28544935 -122238618 + THE1B LTR MaLR 1 364 0 2176 113 0 10 chr11 28544960 28545269 -122238284 + AluSc SINE Alu 1 306 -3 459 181 30 30 chr11 28545444 28545577 -122237976 - Charlie5 DNA MER1_type -90 2522 2390 747 282 29 96 chr11 28545767 28546214 -122237339 - MLT1J LTR MaLR -94 417 1 1218 61 0 22 chr11 28546702 28546882 -122236671 + (TTTC)n Simple_repeat Simple_repeat 3 178 0 522 132 9 19 chr11 28546884 28546990 -122236563 + CT-rich Low_complexity Low_complexity 4 108 0 1611 141 48 12 chr11 28546991 28547239 -122236314 - AluSq SINE Alu -52 261 5 194 311 151 19 chr11 28547406 28547512 -122236041 - L2 LINE L2 -31 3241 3122 211 224 0 17 chr11 28547545 28547603 -122235950 + (TTG)n Simple_repeat Simple_repeat 3 59 0 1106 178 0 72 chr11 28547695 28547931 -122235622 + MER20 DNA MER1_type 1 219 0 281 326 131 11 chr11 28548679 28548854 -122234699 + L2 LINE L2 2841 3036 -236 250 353 88 22 chr11 28548891 28549027 -122234526 + L2 LINE L2 3123 3267 -5 22 0 0 0 chr11 28549121 28549143 -122234410 + AT_rich Low_complexity Low_complexity 1 22 0 3841 240 82 141 chr11 28549967 28550807 -122232746 + L2 LINE L2 37 925 -2389 601 135 0 0 chr11 28550807 28550896 -122232657 - 5S rRNA rRNA -31 90 2 3841 240 82 141 chr11 28550896 28551684 -122231869 + L2 LINE L2 925 1583 -1731 2180 134 0 6 chr11 28551684 28551998 -122231555 - AluSx SINE Alu 0 312 1 3841 240 82 141 chr11 28551998 28552600 -122230953 + L2 LINE L2 1583 2219 -1095 1348 162 30 60 chr11 28552615 28552949 -122230604 - MER33 DNA MER1_type 0 324 1 209 68 136 23 chr11 28552960 28553004 -122230549 - L2 LINE L2 -530 2784 2736 21 0 0 0 chr11 28553016 28553037 -122230516 + AT_rich Low_complexity Low_complexity 1 21 0 775 151 0 8 chr11 28553037 28553156 -122230397 - FLAM_C SINE Alu -15 118 1 965 219 136 79 chr11 28553160 28553196 -122230357 - L2 LINE L2 -568 2746 2713 2168 103 6 32 chr11 28553196 28553508 -122230045 - AluSq SINE Alu -9 304 1 965 219 136 79 chr11 28553508 28553877 -122229676 - L2 LINE L2 -601 2713 2318 685 277 117 73 chr11 28553877 28554453 -122229100 - L2 LINE L2 -125 3188 2592 229 278 56 37 chr11 28554509 28554617 -122228936 + L2 LINE L2 3159 3268 -4 202 365 0 0 chr11 28554670 28554733 -122228820 + L2 LINE L2 3201 3263 -9 21 0 0 0 chr11 28555953 28555974 -122227579 + AT_rich Low_complexity Low_complexity 1 21 0 2148 114 0 13 chr11 28556212 28556519 -122227034 - AluSx SINE Alu -9 303 1 335 171 34 111 chr11 28556668 28556785 -122226768 + MIR SINE MIR 105 212 -50 311 341 38 30 chr11 28557633 28557765 -122225788 - MIR SINE MIR -6 256 124 377 297 109 17 chr11 28558239 28558414 -122225139 + MIR SINE MIR 71 261 -1 238 206 29 69 chr11 28558725 28558827 -122224726 - MER103 DNA DNA -3 163 66 24 85 0 0 chr11 28559213 28559272 -122224281 + AT_rich Low_complexity Low_complexity 1 59 0 435 263 45 23 chr11 28560002 28560135 -122223418 + MER5B DNA MER1_type 8 143 -35 227 340 47 0 chr11 28560837 28560943 -122222610 - MIR SINE MIR -55 153 43 376 309 22 36 chr11 28560992 28561131 -122222422 - MER5A DNA MER1_type -1 188 52 281 175 0 95 chr11 28561136 28561199 -122222354 + MER5B DNA MER1_type 2 58 -120 710 182 0 0 chr11 28561202 28561323 -122222230 + AluJb SINE Alu 190 310 -2 601 222 0 8 chr11 28561328 28561445 -122222108 + MER5B DNA MER1_type 63 178 0 510 276 109 6 chr11 28561528 28561684 -122221869 + MIR SINE MIR 32 203 -59 217 89 44 0 chr11 28561738 28561783 -122221770 + (TG)n Simple_repeat Simple_repeat 2 48 0 210 224 47 47 chr11 28562620 28562705 -122220848 - MIR3 SINE MIR -1 207 123 202 330 212 0 chr11 28562863 28562981 -122220572 + L2 LINE L2 3123 3265 -7 204 200 0 0 chr11 28563138 28563183 -122220370 + G-rich Low_complexity Low_complexity 1 45 0 1108 286 62 47 chr11 28563210 28563296 -122220257 - L2 LINE L2 -33 3280 3197 228 67 0 0 chr11 28563296 28563326 -122220227 + (TG)n Simple_repeat Simple_repeat 1 30 0 1108 286 62 47 chr11 28563326 28564142 -122219411 - L2 LINE L2 -116 3197 2364 385 177 18 18 chr11 28564143 28564256 -122219297 + (TCTA)n Simple_repeat Simple_repeat 1 113 0 214 326 37 59 chr11 28564264 28564399 -122219154 - MIR SINE MIR -67 141 10 392 292 157 11 chr11 28564404 28564560 -122218993 - MIR SINE MIR -56 206 20 9672 169 15 11 chr11 28564560 28566544 -122217009 - L1PA15 LINE L1 0 6165 4159 2115 142 6 3 chr11 28566544 28566855 -122216698 - AluSq SINE Alu -1 312 1 9672 169 15 11 chr11 28566855 28567519 -122216034 - L1PA15 LINE L1 -2006 4159 3499 392 292 157 11 chr11 28567519 28567540 -122216013 - MIR SINE MIR -242 20 3 879 245 89 3 chr11 28568316 28568688 -122214865 + L1ME4a LINE L1 3001 3404 -2742 1819 235 61 16 chr11 28568719 28569289 -122214264 + L1ME4a LINE L1 3497 4092 -2054 2540 107 0 3 chr11 28569304 28569667 -122213886 + THE1C LTR MaLR 14 375 0 3485 238 62 15 chr11 28569667 28570101 -122213452 + L1ME4a LINE L1 4088 4500 -1646 2349 92 13 0 chr11 28570101 28570407 -122213146 + AluSp SINE Alu 1 310 -3 3485 238 62 15 chr11 28570407 28571152 -122212401 + L1ME4a LINE L1 4500 5322 -824 538 229 14 0 chr11 28571154 28571298 -122212255 + L1ME1 LINE L1 4514 4659 -1487 1072 189 4 16 chr11 28571302 28571546 -122212007 + L1MA9 LINE L1 6071 6311 -1 2662 234 42 19 chr11 28571569 28572377 -122211176 + L1ME1 LINE L1 5311 6142 -24 189 147 0 0 chr11 28572505 28572539 -122211014 + (GA)n Simple_repeat Simple_repeat 2 35 0 2000 126 28 20 chr11 28572884 28573242 -122210311 - THE1C LTR MaLR 0 375 15 191 346 13 58 chr11 28573632 28573683 -122209870 - L2 LINE L2 -1357 1957 1905 2089 155 3 15 chr11 28573683 28574024 -122209529 - MER1B DNA MER1_type 0 337 1 191 346 13 58 chr11 28574024 28574128 -122209425 - L2 LINE L2 -1409 1905 1809 358 268 24 12 chr11 28574417 28574499 -122209054 - MIR3 SINE MIR -42 166 84 2316 110 0 0 chr11 28574663 28574962 -122208591 - AluSx SINE Alu -13 299 1 371 269 86 0 chr11 28575421 28575514 -122208039 + MIR SINE MIR 44 144 -118 189 290 16 16 chr11 28575692 28575754 -122207799 + L3 LINE CR1 1288 1349 -228 251 0 0 56 chr11 28576541 28576577 -122206976 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 2257 121 0 0 chr11 28576682 28576987 -122206566 + AluSx SINE Alu 1 305 -7 293 314 36 9 chr11 28577081 28577304 -122206249 + L1ME4a LINE L1 5616 5844 -277 406 265 49 43 chr11 28577386 28577548 -122206005 + L1ME4a LINE L1 5956 6118 -3 2017 171 17 62 chr11 28578622 28579102 -122204451 - MLT2B2 LTR ERVL 0 464 1 30402 153 43 26 chr11 28579111 28584764 -122198789 - ERVL-B2 LTR ERVL -12 5752 2 324 94 0 19 chr11 28584764 28584803 -122198750 - Ricksha DNA DNA -1143 903 866 339 25 0 0 chr11 28584820 28584860 -122198693 + (TG)n Simple_repeat Simple_repeat 2 41 0 1631 153 121 7 chr11 28584860 28585167 -122198386 + MER2 DNA MER2_type 2 343 -1 776 245 51 65 chr11 28585168 28585519 -122198034 - MLT2B3 LTR ERVL -123 431 86 465 137 0 0 chr11 28585650 28585723 -122197830 - MLT2B1 LTR ERVL -439 81 9 1717 148 48 15 chr11 28586385 28586656 -122196897 + AluJb SINE Alu 9 288 -24 244 284 170 35 chr11 28587237 28587466 -122196087 + L3b LINE CR1 1191 1450 -133 189 0 0 0 chr11 28587850 28587871 -122195682 + (CA)n Simple_repeat Simple_repeat 2 22 0 1463 78 15 86 chr11 28587874 28588142 -122195411 + L1MA2 LINE L1 6056 6304 0 566 247 89 11 chr11 28588341 28588531 -122195022 - MLT1L LTR MaLR 0 615 411 745 226 52 44 chr11 28588533 28588785 -122194768 - HAL1 LINE L1 -2232 275 22 482 243 44 77 chr11 28588857 28589038 -122194515 - MLT1L LTR MaLR -354 261 87 396 0 0 0 chr11 28589638 28589682 -122193871 + (TG)n Simple_repeat Simple_repeat 2 45 0 279 330 63 36 chr11 28590325 28590536 -122193017 - MIR SINE MIR -33 229 16 428 335 16 11 chr11 28590625 28590810 -122192743 - L2 LINE L2 -338 2976 2791 901 216 60 5 chr11 28591843 28592042 -122191511 + MER58A DNA MER1_type 1 210 -14 626 306 15 48 chr11 28592068 28592339 -122191214 - L2 LINE L2 -561 2753 2492 400 323 137 47 chr11 28592958 28593404 -122190149 + L2 LINE L2 2217 2702 -612 2288 93 0 7 chr11 28594032 28594334 -122189219 - AluSc SINE Alu -9 300 1 377 307 79 82 chr11 28595311 28595715 -122187838 + HAL1 LINE L1 1035 1437 -1070 900 103 16 4 chr11 28595717 28595888 -122187665 + L1MB1 LINE L1 6025 6167 -1 2374 81 0 37 chr11 28595916 28596238 -122187315 + AluSp SINE Alu 1 310 -3 261 291 35 0 chr11 28596281 28596367 -122187186 + HAL1 LINE L1 1535 1623 -884 1901 130 51 10 chr11 28596476 28596769 -122186784 + AluSq SINE Alu 1 305 -8 309 329 51 7 chr11 28597173 28597310 -122186243 + HAL1 LINE L1 1623 1765 -742 964 113 6 6 chr11 28597345 28597505 -122186048 + L1PB1 LINE L1 5634 5793 -358 354 165 0 33 chr11 28597537 28597719 -122185834 + (TA)n Simple_repeat Simple_repeat 2 177 0 450 192 0 36 chr11 28597817 28598325 -122185228 + (TA)n Simple_repeat Simple_repeat 1 489 0 247 186 0 30 chr11 28598337 28598504 -122185049 + (TA)n Simple_repeat Simple_repeat 2 163 0 2316 108 25 3 chr11 28598529 28598891 -122184662 + L1PB1 LINE L1 5782 6151 0 382 82 66 0 chr11 28599407 28599468 -122184085 - MLT1A2 LTR MaLR -308 66 2 2656 216 65 39 chr11 28599559 28600726 -122182827 + L1MD2 LINE L1 5123 6359 0 466 322 34 34 chr11 28602898 28603075 -122180478 - L2 LINE L2 0 3272 3096 366 271 108 22 chr11 28603110 28603298 -122180255 - MIR SINE MIR -61 201 8 207 281 18 0 chr11 28603376 28603433 -122180120 - L2 LINE L2 -252 3061 3004 477 257 87 58 chr11 28603473 28603679 -122179874 + MIR SINE MIR 45 256 -6 272 357 81 46 chr11 28604267 28604417 -122179136 + L2 LINE L2 2357 2500 -814 2621 185 35 80 chr11 28604417 28605102 -122178451 + MLT1E1 LTR MaLR 1 654 0 272 357 81 46 chr11 28605102 28605346 -122178207 + L2 LINE L2 2500 2765 -549 661 282 87 8 chr11 28605358 28605599 -122177954 + MIR SINE MIR 3 262 0 188 178 67 44 chr11 28606167 28606212 -122177341 + L2 LINE L2 3262 3307 -6 180 179 0 0 chr11 28606831 28606870 -122176683 + CT-rich Low_complexity Low_complexity 2 40 0 1714 166 32 3 chr11 28606882 28607165 -122176388 - AluJb SINE Alu -21 291 1 369 0 0 0 chr11 28607410 28607451 -122176102 + (TG)n Simple_repeat Simple_repeat 2 42 0 326 345 40 14 chr11 28607458 28607606 -122175947 - MIR SINE MIR -21 241 90 509 299 0 15 chr11 28607619 28607756 -122175797 - MIR SINE MIR -123 139 5 1551 184 35 4 chr11 28608437 28608698 -122174855 + AluJb SINE Alu 5 273 -39 1339 164 5 0 chr11 28608833 28609040 -122174513 - AluJo SINE Alu -20 292 85 544 314 21 53 chr11 28609045 28609320 -122174233 - Tigger8 DNA MER2_type -285 381 117 812 107 0 16 chr11 28609320 28609441 -122174112 + L1PA10 LINE L1 6047 6165 -3 544 314 21 53 chr11 28609441 28609502 -122174051 - Tigger8 DNA MER2_type -549 117 56 284 274 0 0 chr11 28609830 28609903 -122173650 + MER94 DNA DNA 1 73 -61 223 286 0 0 chr11 28610313 28610369 -122173184 + L2 LINE L2 3217 3272 0 236 30 30 0 chr11 28611194 28611227 -122172326 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 2112 109 3 0 chr11 28611240 28611523 -122172030 - AluSx SINE Alu -28 284 1 561 263 8 0 chr11 28611616 28611749 -122171804 + MER94 DNA DNA 1 134 0 371 288 0 34 chr11 28612773 28612919 -122170634 + G-rich Low_complexity Low_complexity 2 142 0 1204 223 39 18 chr11 28613108 28613445 -122170108 + MER2 DNA MER2_type 1 344 0 1662 268 12 33 chr11 28613504 28614016 -122169537 - MER74B LTR ERVL -67 555 55 485 222 208 0 chr11 28614016 28614160 -122169393 + L2 LINE L2 3138 3311 -2 203 272 88 61 chr11 28614184 28614298 -122169255 + L2 LINE L2 3152 3268 -4 713 218 0 0 chr11 28614571 28614704 -122168849 + FLAM_A SINE Alu 1 133 0 232 197 0 14 chr11 28614770 28614841 -122168712 + L1ME4a LINE L1 6052 6121 0 809 297 26 4 chr11 28615699 28615972 -122167581 - LTR16A LTR ERVL -6 444 166 1683 203 37 8 chr11 28616020 28616375 -122167178 + MLT1A1 LTR MaLR 1 365 0 412 258 42 90 chr11 28617181 28617348 -122166205 + MIR SINE MIR 6 164 -98 610 234 8 0 chr11 28618371 28618495 -122165058 + L2 LINE L2 3189 3313 0 192 262 0 0 chr11 28618543 28618585 -122164968 + MIR SINE MIR 211 252 -10 198 0 0 0 chr11 28618596 28618618 -122164935 + (TGAA)n Simple_repeat Simple_repeat 4 25 0 185 446 0 9 chr11 28618759 28618871 -122164682 + L3 LINE CR1 521 631 -946 323 378 33 22 chr11 28618886 28619161 -122164392 - L1 LINE L1 -935 5211 4934 24 0 0 0 chr11 28619167 28619191 -122164362 + AT_rich Low_complexity Low_complexity 1 24 0 310 284 61 68 chr11 28619618 28619766 -122163787 - L1MEd LINE L1 -5970 149 3 209 207 35 35 chr11 28621184 28621242 -122162311 - MIR SINE MIR -32 230 173 183 303 30 15 chr11 28621273 28621339 -122162214 - MIR SINE MIR -187 75 9 325 310 110 0 chr11 28621399 28621554 -122161999 + L1ME4a LINE L1 5837 6008 -113 195 378 11 11 chr11 28622809 28622899 -122160654 + L2 LINE L2 2887 2976 -296 183 409 21 0 chr11 28623044 28623137 -122160416 + L2 LINE L2 2790 2884 -430 280 346 30 0 chr11 28623185 28623286 -122160267 + L2 LINE L2 2952 3055 -258 797 187 47 0 chr11 28624224 28624395 -122159158 + MER3 DNA MER1_type 31 209 0 837 176 0 0 chr11 28624468 28624599 -122158954 + FLAM_C SINE Alu 2 132 -1 198 0 0 0 chr11 28625621 28625643 -122157910 + (A)n Simple_repeat Simple_repeat 1 22 0 492 283 59 33 chr11 28625884 28626273 -122157280 - L1MC5 LINE L1 -23 7938 7540 43 35 0 0 chr11 28626328 28626385 -122157168 + AT_rich Low_complexity Low_complexity 1 57 0 2112 149 3 0 chr11 28626526 28626834 -122156719 - AluSx SINE Alu -1 311 3 286 221 0 65 chr11 28626878 28626955 -122156598 - L1MC4a LINE L1 -415 7393 7322 436 315 7 7 chr11 28627006 28627149 -122156404 + MIR SINE MIR 88 230 -32 2353 91 10 0 chr11 28627627 28627935 -122155618 + AluSq SINE Alu 1 311 -2 2583 153 24 2 chr11 28628197 28628614 -122154939 - MSTB LTR MaLR 0 426 1 340 383 40 7 chr11 28628825 28628974 -122154579 + L2 LINE L2 3101 3254 -18 409 222 78 11 chr11 28629617 28629707 -122153846 - MER5B DNA MER1_type -81 97 2 2287 59 0 18 chr11 28633084 28633370 -122150183 - AluY SINE Alu -30 281 1 214 264 11 81 chr11 28633678 28633765 -122149788 - MER91A DNA MER1_type -114 82 2 218 271 43 14 chr11 28634157 28634227 -122149326 - MIR SINE MIR -117 145 74 267 268 171 0 chr11 28634507 28634589 -122148964 + MIR SINE MIR 58 153 -109 499 216 50 16 chr11 28636071 28636199 -122147354 + MIR SINE MIR 55 194 -65 2263 107 0 13 chr11 28636291 28636608 -122146945 + AluSq SINE Alu 1 313 0 2133 129 0 0 chr11 28636978 28637272 -122146281 - AluSg SINE Alu -15 295 2 2245 108 0 0 chr11 28637282 28637579 -122145974 - AluSx SINE Alu -15 297 1 1564 160 92 34 chr11 28638046 28638371 -122145182 + MER2 DNA MER2_type 1 344 0 2098 108 7 0 chr11 28638512 28638818 -122144735 + AluSx SINE Alu 1 308 -4 524 232 93 0 chr11 28640525 28640676 -122142877 + MIR3 SINE MIR 36 200 -8 1565 161 92 4 chr11 28641384 28641657 -122141896 - AluJo SINE Alu -15 297 1 1310 222 60 66 chr11 28641984 28642701 -122140852 - L1MEc LINE L1 -5092 1304 528 1851 163 7 3 chr11 28642784 28643090 -122140463 - AluSx SINE Alu -3 309 3 825 215 46 5 chr11 28643110 28643305 -122140248 + HAL1 LINE L1 1397 1599 -908 1556 237 94 18 chr11 28643305 28643739 -122139814 - MLT1C LTR MaLR 0 467 1 652 211 26 75 chr11 28643739 28643880 -122139673 + HAL1 LINE L1 1595 1741 -766 1080 185 0 0 chr11 28643880 28644037 -122139516 + FRAM SINE Alu 1 157 -9 1896 117 71 0 chr11 28644044 28644325 -122139228 + AluSx SINE Alu 1 301 -11 652 211 26 75 chr11 28644325 28644402 -122139151 + HAL1 LINE L1 1747 1810 -697 2967 168 28 16 chr11 28644409 28644915 -122138638 - MLT2B1 LTR ERVL -8 512 1 899 253 36 30 chr11 28644915 28645220 -122138333 + HAL1 LINE L1 1809 2115 -392 22 35 0 0 chr11 28645292 28645321 -122138232 + AT_rich Low_complexity Low_complexity 1 29 0 24 53 0 0 chr11 28645339 28645377 -122138176 + AT_rich Low_complexity Low_complexity 1 38 0 338 299 27 17 chr11 28645788 28645919 -122137634 + MIR SINE MIR 2 136 -72 718 201 82 25 chr11 28645947 28646106 -122137447 + FAM SINE Alu 1 168 -7 325 306 56 19 chr11 28646156 28646264 -122137289 + MER5A DNA MER1_type 60 171 -18 221 320 49 66 chr11 28646159 28646281 -122137272 - MER5A DNA MER1_type -51 138 19 * 30 0 0 0 chr11 28646427 28646457 -122137096 + AT_rich Low_complexity Low_complexity 1 30 0 24 32 0 0 chr11 28647373 28647404 -122136149 + AT_rich Low_complexity Low_complexity 1 31 0 1171 199 64 66 chr11 28648773 28649166 -122134387 + L1M4 LINE L1 2974 3365 -2781 1468 180 34 82 chr11 28649483 28649520 -122134033 + AluJo SINE Alu 1 38 -274 1802 111 0 4 chr11 28649520 28649764 -122133789 - AluSq SINE Alu -70 243 1 1468 180 34 82 chr11 28649764 28650054 -122133499 + AluJo SINE Alu 38 312 0 23 92 0 0 chr11 28701137 28701202 -122082351 + AT_rich Low_complexity Low_complexity 1 65 0 722 37 0 0 chr11 28701380 28701461 -122082092 - AluY SINE Alu -20 291 211 820 233 21 10 chr11 28701461 28701748 -122081805 - L1MC4a LINE L1 -1867 5941 5486 458 230 48 16 chr11 28703849 28703975 -122079578 + MIR SINE MIR 37 166 -96 200 275 50 38 chr11 28707133 28707213 -122076340 - MER5A DNA MER1_type -102 87 7 2488 52 0 0 chr11 28707613 28707902 -122075651 - L1PA5 LINE L1 -1 6804 6516 30010 55 6 1 chr11 28707909 28712048 -122071505 - L1PA5 LINE L1 -396 6409 2241 372 304 10 10 chr11 28712156 28712258 -122071295 - MIR SINE MIR -72 136 35 986 278 83 62 chr11 28712924 28713504 -122070049 - MLT1L LTR MaLR -17 598 7 268 320 97 0 chr11 28713507 28713610 -122069943 + MIR SINE MIR 149 261 -1 212 267 60 93 chr11 28713834 28713984 -122069569 + L2 LINE L2 3169 3313 0 3675 175 18 2 chr11 28714041 28714670 -122068883 - L1MB3 LINE L1 0 6183 5545 2070 65 8 15 chr11 28714722 28714985 -122068568 - L1PA8 LINE L1 0 6172 5912 748 261 66 17 chr11 28715104 28715345 -122068208 + MIR SINE MIR 8 260 -2 239 336 90 8 chr11 28715390 28715512 -122068041 + MARNA DNA Mariner 396 527 -59 287 250 14 0 chr11 28715524 28715596 -122067957 - MLT1K LTR MaLR -4 584 512 442 261 93 68 chr11 28716731 28717084 -122066469 - L1ME4a LINE L1 -1 6120 5759 23 0 0 0 chr11 28717108 28717131 -122066422 + AT_rich Low_complexity Low_complexity 1 23 0 1335 68 0 28 chr11 28717175 28717352 -122066201 - AluY SINE Alu -13 298 127 680 324 21 8 chr11 28718700 28718938 -122064615 + MIR SINE MIR 10 250 -12 424 313 97 15 chr11 28720115 28720310 -122063243 - MIR SINE MIR -35 227 17 232 357 18 36 chr11 28720376 28720544 -122063009 - MER5B DNA MER1_type -7 171 7 333 328 0 8 chr11 28721286 28721408 -122062145 + LTR67 LTR ERVL 430 550 -7 352 329 47 13 chr11 28721618 28721767 -122061786 + MIR SINE MIR 37 190 -72 230 344 95 36 chr11 28722709 28723265 -122060288 + L2 LINE L2 1528 2116 -1198 255 270 24 63 chr11 28723298 28723424 -122060129 + MLT1L LTR MaLR 68 188 -427 894 304 26 26 chr11 28723457 28723770 -122059783 + MLT1L LTR MaLR 296 608 -7 237 226 0 0 chr11 28723775 28723828 -122059725 + L2 LINE L2 2201 2253 -1061 872 276 49 0 chr11 28723848 28724073 -122059480 - MIR SINE MIR -16 246 11 799 259 87 51 chr11 28724101 28724456 -122059097 - L3 LINE CR1 -189 1388 1021 213 262 193 35 chr11 28724868 28725013 -122058540 - MIR SINE MIR -60 202 35 293 271 82 16 chr11 28725236 28725358 -122058195 - L3 LINE CR1 -709 868 739 3514 45 24 56 chr11 28725982 28726261 -122057292 - MLT2A2 LTR ERVL 0 453 193 2327 37 4 0 chr11 28726261 28726531 -122057022 - AluY SINE Alu -9 302 32 3514 45 24 56 chr11 28726531 28726715 -122056838 - MLT2A2 LTR ERVL -260 193 5 5805 73 3 1 chr11 28726719 28727449 -122056104 - HERVL-A2 LTR ERVL 0 5654 4924 457 85 0 0 chr11 28727457 28727516 -122056037 - HERVL-A2 LTR ERVL -1048 4606 4548 570 304 93 5 chr11 28728216 28728420 -122055133 + MIR SINE MIR 38 259 -3 258 281 150 15 chr11 28728527 28728657 -122054896 + MIR3 SINE MIR 48 196 -12 623 329 32 5 chr11 28729419 28729638 -122053915 - MIR SINE MIR -8 254 30 325 317 83 0 chr11 28730007 28730152 -122053401 - MER117 DNA MER1_type 0 197 41 300 158 0 0 chr11 28730678 28730735 -122052818 + GA-rich Low_complexity Low_complexity 1 57 0 820 293 125 36 chr11 28730736 28731183 -122052370 - L2 LINE L2 -14 3299 2813 550 339 14 9 chr11 28731256 28731474 -122052079 - L2 LINE L2 -675 2639 2421 669 277 62 19 chr11 28731684 28732005 -122051548 + L1ME4a LINE L1 5520 5854 -267 795 279 37 113 chr11 28732559 28733021 -122050532 + MLT1K LTR MaLR 3 429 -159 7740 41 3 6 chr11 28733138 28733916 -122049637 + L1PA6 LINE L1 5254 6031 -123 2602 49 0 0 chr11 28733916 28734223 -122049330 + AluY SINE Alu 1 307 -4 7740 41 3 6 chr11 28734223 28734341 -122049212 + L1PA6 LINE L1 6031 6148 -6 432 314 6 6 chr11 28734605 28734777 -122048776 - L1ME3A LINE L1 -264 5906 5735 356 165 132 11 chr11 28734780 28734871 -122048682 + MLT1K LTR MaLR 487 588 0 284 188 254 65 chr11 28734941 28735079 -122048474 + L1ME4a LINE L1 5955 6118 -3 511 307 14 14 chr11 28735668 28735808 -122047745 - MIR3 SINE MIR -32 176 37 961 126 0 0 chr11 28737043 28737170 -122046383 - FLAM_C SINE Alu -5 128 2 197 256 0 0 chr11 28737281 28737324 -122046229 - L2 LINE L2 -4 3268 3226 895 326 128 23 chr11 28737717 28738516 -122045037 - L2 LINE L2 -58 3255 2375 189 336 119 15 chr11 28739145 28739279 -122044274 + MIR3 SINE MIR 55 202 -6 720 141 0 0 chr11 28739596 28739717 -122043836 + (TCCC)n Simple_repeat Simple_repeat 4 124 0 192 121 30 0 chr11 28739900 28739933 -122043620 - L2 LINE L2 -16 3297 3264 298 268 0 0 chr11 28740096 28740152 -122043401 + MIR SINE MIR 20 75 -133 564 291 125 35 chr11 28740429 28740742 -122042811 + MER102b DNA MER1_type 1 341 0 194 235 78 0 chr11 28740919 28740970 -122042583 + L2 LINE L2 3258 3312 -1 257 321 144 5 chr11 28741203 28741418 -122042135 - L2 LINE L2 0 3313 3069 354 281 84 60 chr11 28741630 28741978 -122041575 - MLT1L LTR MaLR -3 612 238 240 293 0 94 chr11 28742138 28742244 -122041309 - L2 LINE L2 -198 3074 2979 410 94 16 0 chr11 28742634 28742698 -122040855 + (ATG)n Simple_repeat Simple_repeat 1 65 0 749 250 36 16 chr11 28742699 28742891 -122040662 - MIR SINE MIR -8 254 59 211 373 0 15 chr11 28743526 28743593 -122039960 + MIR SINE MIR 17 82 -126 189 306 42 0 chr11 28743846 28743918 -122039635 + MIR SINE MIR 32 106 -156 1493 287 30 13 chr11 28743919 28744386 -122039167 - MLT1J LTR MaLR -36 475 1 311 264 144 8 chr11 28744394 28744519 -122039034 + MIR SINE MIR 109 250 -12 193 216 59 39 chr11 28745381 28745432 -122038121 - L2 LINE L2 0 3313 3262 307 271 78 8 chr11 28745616 28745745 -122037808 - L1ME4a LINE L1 0 6121 5984 619 224 29 63 chr11 28745985 28746159 -122037394 - L2 LINE L2 -518 2796 2629 1388 244 68 43 chr11 28746179 28746667 -122036886 + MLT1D LTR MaLR 6 505 0 2862 218 93 29 chr11 28746667 28747498 -122036055 + MLT1D-int LTR MaLR 1 884 -487 1598 184 32 26 chr11 28747711 28748053 -122035500 + MER2 DNA MER2_type 1 344 0 535 244 6 62 chr11 28748440 28748616 -122034937 - LTR16A1 LTR ERVL -26 431 266 900 183 186 8 chr11 28748790 28749042 -122034511 + MER5C DNA MER1_type 11 307 -17 931 290 112 28 chr11 28749109 28749320 -122034233 - L2 LINE L2 -3 3269 3077 1749 271 71 19 chr11 28749320 28749884 -122033669 - MLT1E LTR MaLR 0 593 1 931 290 112 28 chr11 28749884 28750388 -122033165 - L2 LINE L2 -195 3077 2513 1132 150 16 0 chr11 28750388 28750575 -122032978 - MSTB LTR MaLR 0 426 237 519 273 137 0 chr11 28750578 28750761 -122032792 - L2 LINE L2 -1040 2274 2067 370 228 118 6 chr11 28750779 28750934 -122032619 - L1 LINE L1 -1664 4482 4311 1426 237 82 31 chr11 28750940 28751455 -122032098 - L2 LINE L2 -1230 2084 1544 206 374 17 0 chr11 28751410 28751525 -122032028 + MIR SINE MIR 134 250 -12 * 258 367 0 0 chr11 28751766 28751856 -122031697 + MIR SINE MIR 65 154 -108 1893 217 46 65 chr11 28753048 28753129 -122030424 - MLT1F LTR MaLR 0 542 461 2438 55 10 3 chr11 28753129 28753422 -122030131 + AluY SINE Alu 1 295 -16 1893 217 46 65 chr11 28753422 28753883 -122029670 - MLT1F LTR MaLR -81 461 10 289 193 178 13 chr11 28754096 28754202 -122029351 - MIR SINE MIR -64 144 47 863 165 131 55 chr11 28754202 28754375 -122029178 + MSTA LTR MaLR 1 198 -230 2281 100 0 0 chr11 28754375 28754666 -122028887 + AluSc SINE Alu 1 291 -18 863 165 131 55 chr11 28754666 28754729 -122028824 + MSTA LTR MaLR 198 255 -173 3303 138 14 12 chr11 28754733 28755298 -122028255 + MSTA-int LTR MaLR 1004 1569 -11 1964 135 130 18 chr11 28755302 28755686 -122027867 + MSTA LTR MaLR 1 427 -1 181 314 129 0 chr11 28755731 28755801 -122027752 - L2 LINE L2 -51 3221 3143 278 208 117 13 chr11 28755929 28756006 -122027547 - L2 LINE L2 -1351 1963 1879 183 42 0 0 chr11 28756115 28756139 -122027414 + (CA)n Simple_repeat Simple_repeat 2 25 0 3458 105 15 18 chr11 28756385 28757001 -122026552 - MER4B LTR ERV1 0 779 1 406 235 0 5 chr11 28757056 28757142 -122026411 + MIR SINE MIR 3 86 -122 1099 139 49 67 chr11 28757158 28757381 -122026172 - AluJb SINE Alu 0 312 94 577 257 81 9 chr11 28757385 28757579 -122025974 + MIR SINE MIR 65 262 0 273 160 0 0 chr11 28757987 28758037 -122025516 - L1ME3 LINE L1 -8 6154 6105 233 224 106 128 chr11 28758210 28758278 -122025275 - MIR SINE MIR -4 258 190 2058 116 25 0 chr11 28758278 28758555 -122024998 - AluSg SINE Alu -24 286 3 233 224 106 128 chr11 28758555 28758665 -122024888 - MIR SINE MIR -72 190 84 363 78 0 0 chr11 28759661 28759712 -122023841 + (CA)n Simple_repeat Simple_repeat 1 51 0 464 239 142 0 chr11 28760091 28760204 -122023349 - L2 LINE L2 -5 3267 3139 1336 211 55 43 chr11 28760537 28760985 -122022568 + MLT1C LTR MaLR 5 437 -30 234 0 0 0 chr11 28761706 28761732 -122021821 + (CCCCG)n Simple_repeat Simple_repeat 1 26 0 227 188 0 29 chr11 28762406 28762475 -122021078 + (TATATG)n Simple_repeat Simple_repeat 2 68 0 2140 98 11 0 chr11 28763383 28763698 -122019855 - AluSc SINE Alu 0 318 1 3236 144 13 42 chr11 28764496 28764923 -122018630 - MER1A DNA MER1_type -2173 527 118 2056 160 0 3 chr11 28764923 28765236 -122018317 + AluSx SINE Alu 1 312 0 3236 144 13 42 chr11 28765236 28765351 -122018202 - MER1A DNA MER1_type -2582 118 1 243 0 0 0 chr11 28765362 28765389 -122018164 + (TG)n Simple_repeat Simple_repeat 2 28 0 248 315 40 47 chr11 28765940 28766089 -122017464 + MIR SINE MIR 109 256 -6 343 286 94 83 chr11 28766705 28767055 -122016498 - L1ME3 LINE L1 -183 5938 5585 939 283 100 57 chr11 28767084 28767624 -122015929 + MLT1K LTR MaLR 16 578 -10 282 330 28 37 chr11 28768437 28768546 -122015007 - L2 LINE L2 -2 3311 3204 1802 281 50 18 chr11 28769374 28770097 -122013456 - MER20B DNA MER1_type -37 746 1 391 323 74 45 chr11 28771028 28771297 -122012256 - L2 LINE L2 0 3313 3037 261 337 31 10 chr11 28771544 28771642 -122011911 + MIR SINE MIR 30 129 -79 387 263 10 20 chr11 28771655 28771754 -122011799 + L2 LINE L2 3193 3290 -23 720 141 0 0 chr11 28772340 28772461 -122011092 + (TCCC)n Simple_repeat Simple_repeat 4 124 0 195 121 30 0 chr11 28772644 28772677 -122010876 - L2 LINE L2 -16 3297 3264 699 147 47 6 chr11 28773017 28773187 -122010366 + CT-rich Low_complexity Low_complexity 2 178 0 446 306 122 5 chr11 28773398 28773594 -122009959 + L2 LINE L2 2721 2939 -375 770 225 0 0 chr11 28773616 28773758 -122009795 - AluJb SINE Alu -31 281 140 694 261 209 34 chr11 28773761 28774087 -122009466 + L2 LINE L2 2929 3311 -2 386 267 117 8 chr11 28774215 28774335 -122009218 - MIR SINE MIR -13 249 117 229 282 24 35 chr11 28774329 28774414 -122009139 + MIR3 SINE MIR 115 198 -10 * 366 284 28 21 chr11 28774882 28775066 -122008487 - MIR3 SINE MIR -9 199 13 543 257 35 14 chr11 28775474 28775618 -122007935 + MIR SINE MIR 47 193 -69 244 209 12 116 chr11 28775619 28775705 -122007848 - MIR SINE MIR -9 253 177 2364 198 42 12 chr11 28776134 28776709 -122006844 + L1MC4 LINE L1 7309 7900 -142 304 135 0 0 chr11 28776714 28776766 -122006787 + L1MC4 LINE L1 7989 8040 -2 348 289 81 57 chr11 28776789 28777028 -122006525 - L1ME3A LINE L1 -302 5868 5621 2060 211 77 6 chr11 28777028 28777496 -122006057 - MLT1D LTR MaLR -2 503 3 348 289 81 57 chr11 28777496 28777538 -122006015 - L1ME3A LINE L1 -549 5621 5581 438 273 41 72 chr11 28777672 28777719 -122005834 - MIR SINE MIR -71 191 144 342 203 13 0 chr11 28777719 28777798 -122005755 + MER116 DNA Mariner 1 80 0 438 273 41 72 chr11 28777798 28777944 -122005609 - MIR SINE MIR -118 144 4 267 304 16 40 chr11 28778602 28778727 -122004826 + MIR3 SINE MIR 82 203 -5 304 318 48 18 chr11 28778959 28779358 -122004195 + L1MC/D LINE L1 4370 4780 -1366 1888 109 0 32 chr11 28779594 28779879 -122003674 + AluSq SINE Alu 32 307 -6 21 0 0 0 chr11 28779927 28779948 -122003605 + AT_rich Low_complexity Low_complexity 1 21 0 445 249 42 22 chr11 28779967 28780237 -122003316 + L1MC/D LINE L1 5143 5425 -743 243 170 0 0 chr11 28781003 28781050 -122002503 + GA-rich Low_complexity Low_complexity 1 47 0 218 228 18 0 chr11 28781087 28781144 -122002409 + GA-rich Low_complexity Low_complexity 1 58 0 269 227 0 13 chr11 28783171 28783246 -122000307 + L1MC/D LINE L1 5412 5485 -2323 438 289 23 16 chr11 28783321 28783449 -122000104 + MIR SINE MIR 15 143 -119 486 266 131 23 chr11 28783509 28783723 -121999830 - MIR SINE MIR -25 237 1 186 388 31 20 chr11 28784547 28784645 -121998908 - L2 LINE L2 -38 3234 3136 276 315 11 22 chr11 28784778 28784867 -121998686 + MER5B DNA MER1_type 17 104 -74 693 278 77 111 chr11 28785389 28785886 -121997667 - L3 LINE CR1 -15 1562 1083 391 313 26 72 chr11 28785984 28786119 -121997434 - MIR SINE MIR -66 142 66 1922 172 10 40 chr11 28786119 28786521 -121997032 + MLT1B LTR MaLR 1 390 0 391 313 26 72 chr11 28786521 28786566 -121996987 - MIR SINE MIR -142 66 20 2117 108 74 14 chr11 28787281 28787632 -121995921 + THE1C LTR MaLR 4 375 0 391 310 115 30 chr11 28787717 28787917 -121995636 + MIR SINE MIR 17 233 -29 2183 119 0 0 chr11 28787918 28788220 -121995333 - AluSg SINE Alu -8 302 1 712 281 91 13 chr11 28788239 28788470 -121995083 - MIR SINE MIR -10 252 4 367 298 133 6 chr11 28788498 28788656 -121994897 + MIR SINE MIR 74 251 -11 202 322 17 0 chr11 28789315 28789374 -121994179 + MIR SINE MIR 32 91 -117 961 227 23 9 chr11 28789382 28789598 -121993955 - MER58A DNA MER1_type 0 224 6 420 259 229 0 chr11 28789680 28789846 -121993707 + MIR SINE MIR 2 205 -57 1256 186 90 37 chr11 28789863 28790186 -121993367 - MLT1A1 LTR MaLR -2 363 24 736 242 99 19 chr11 28790275 28790486 -121993067 + MIR SINE MIR 9 236 -26 476 252 47 53 chr11 28790638 28790956 -121992597 - L1ME4a LINE L1 -238 5883 5568 414 109 0 0 chr11 28790956 28791020 -121992533 - MSTD LTR MaLR 0 396 333 989 161 54 40 chr11 28791033 28791256 -121992297 - MSTD LTR MaLR -170 226 1 451 297 21 67 chr11 28791873 28792112 -121991441 + MIR SINE MIR 21 248 -14 538 237 25 89 chr11 28792337 28792573 -121990980 - L1ME LINE L1 -375 5746 5526 371 163 0 23 chr11 28792736 28792822 -121990731 + GA-rich Low_complexity Low_complexity 2 85 0 362 294 75 60 chr11 28793718 28793919 -121989634 + MIR SINE MIR 21 224 -38 284 373 45 0 chr11 28794811 28794921 -121988632 + L2 LINE L2 3112 3226 -46 216 67 0 0 chr11 28794925 28794955 -121988598 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 331 331 102 25 chr11 28795080 28795237 -121988316 - L2 LINE L2 0 3272 3104 189 195 0 0 chr11 28796231 28796272 -121987281 + T-rich Low_complexity Low_complexity 1 41 0 489 213 49 8 chr11 28797466 28797588 -121985965 - MIR SINE MIR -46 216 90 272 271 73 21 chr11 28798476 28798572 -121984981 - L2 LINE L2 -4 3309 3209 234 353 69 0 chr11 28799472 28799588 -121983965 + MIR SINE MIR 66 189 -73 924 228 5 31 chr11 28799777 28799970 -121983583 - MER5A DNA MER1_type 0 189 2 1166 289 60 24 chr11 28799997 28800644 -121982909 - L2 LINE L2 -8 3305 2438 295 253 67 0 chr11 28800750 28800825 -121982728 - MER91C DNA MER1_type -6 134 55 773 271 44 4 chr11 28801686 28801911 -121981642 - MIR SINE MIR -1 261 28 2109 112 0 7 chr11 28801936 28802251 -121981302 - AluSg SINE Alu 0 313 1 429 296 114 36 chr11 28802299 28802519 -121981034 - MIR SINE MIR -6 256 20 2031 148 0 0 chr11 28802652 28802957 -121980596 + AluSx SINE Alu 1 305 -7 397 295 120 47 chr11 28803113 28803364 -121980189 + L2 LINE L2 2779 3057 -256 2218 217 16 16 chr11 28804146 28804658 -121978895 - Charlie1b DNA MER1_type 0 523 12 1157 321 50 23 chr11 28804682 28805124 -121978429 - MLT1K LTR MaLR -97 491 38 1344 165 30 76 chr11 28805126 28805429 -121978124 + AluJo SINE Alu 1 289 -23 245 310 100 0 chr11 28805539 28805639 -121977914 - L2 LINE L2 -2 3270 3161 * 533 233 17 0 chr11 28805619 28805735 -121977818 - MIR SINE MIR -4 258 141 221 299 70 90 chr11 28805715 28805916 -121977637 - L2 LINE L2 -44 3228 3032 * 234 0 0 0 chr11 28806006 28806032 -121977521 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1742 176 0 0 chr11 28806032 28806311 -121977242 - AluJb SINE Alu -32 280 2 311 286 181 18 chr11 28807397 28807624 -121975929 - L2 LINE L2 -201 3071 2808 198 0 0 0 chr11 28808066 28808088 -121975465 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 22 0 0 0 chr11 28809106 28809128 -121974425 + AT_rich Low_complexity Low_complexity 1 22 0 542 333 23 6 chr11 28809891 28810068 -121973485 + MIR SINE MIR 13 192 -70 222 37 0 0 chr11 28811054 28811081 -121972472 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 2226 123 0 0 chr11 28811306 28811607 -121971946 + AluSx SINE Alu 1 301 -11 2121 130 7 0 chr11 28811644 28811943 -121971610 + AluSx SINE Alu 1 301 -11 247 291 114 0 chr11 28812541 28812620 -121970933 + L2 LINE L2 3192 3279 -34 225 94 0 0 chr11 28812630 28812662 -121970891 + (TTCA)n Simple_repeat Simple_repeat 4 35 0 1064 276 43 88 chr11 28812662 28813424 -121970129 - L2 LINE L2 -3 3310 2597 1826 165 13 0 chr11 28813424 28813727 -121969826 + AluSx SINE Alu 6 312 0 1064 276 43 88 chr11 28813727 28813887 -121969666 - L2 LINE L2 -716 2597 2431 21 0 0 0 chr11 28813887 28813908 -121969645 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr11 28814827 28814847 -121968706 + (TTTCC)n Simple_repeat Simple_repeat 5 24 0 213 304 36 0 chr11 28816260 28816316 -121967237 - MIR3 SINE MIR -40 168 111 194 290 80 30 chr11 28816394 28816494 -121967059 - L2 LINE L2 0 3272 3168 689 128 6 83 chr11 28816817 28816956 -121966597 - MER69 DNA AcHobo -1 2525 2398 1827 148 3 46 chr11 28816956 28817280 -121966273 + AluJb SINE Alu 1 310 -2 689 128 6 83 chr11 28817280 28817296 -121966257 - MER69 DNA AcHobo -128 2398 2382 279 132 264 0 chr11 28817450 28817503 -121966050 - MER69 DNA AcHobo -2459 67 1 206 293 67 13 chr11 28817506 28817581 -121965972 - MIR SINE MIR -153 109 31 370 270 59 53 chr11 28817585 28817721 -121965832 + MIR SINE MIR 22 156 -106 2138 114 0 0 chr11 28817721 28818002 -121965551 + AluSq SINE Alu 1 281 -32 647 0 26 0 chr11 28818002 28818080 -121965473 + (TAAAA)n Simple_repeat Simple_repeat 1 80 0 370 270 59 53 chr11 28818080 28818094 -121965459 + MIR SINE MIR 155 174 -88 974 282 131 31 chr11 28818156 28818613 -121964940 + MLT1J LTR MaLR 1 503 -8 490 264 43 45 chr11 28818954 28819123 -121964430 - MIR SINE MIR -62 146 30 1575 282 44 31 chr11 28819256 28819774 -121963779 - MLT1H1 LTR MaLR -23 532 8 2179 157 12 56 chr11 28819846 28820076 -121963477 - MLT1B LTR MaLR 0 390 184 2277 68 54 0 chr11 28820076 28820356 -121963197 - AluSp SINE Alu -18 295 1 2179 157 12 56 chr11 28820356 28820533 -121963020 - MLT1B LTR MaLR -206 184 1 252 343 65 9 chr11 28820550 28820658 -121962895 - MIR SINE MIR -65 143 30 404 318 0 0 chr11 28821534 28821641 -121961912 + MIR SINE MIR 3 109 -153 245 294 24 0 chr11 28821900 28821985 -121961568 + MIR3 SINE MIR 106 192 -16 1788 190 0 0 chr11 28822064 28822374 -121961179 + AluJb SINE Alu 3 312 0 276 362 17 23 chr11 28822889 28823066 -121960487 - L3 LINE CR1 -351 1226 1051 237 253 165 0 chr11 28823435 28823514 -121960039 + MER5A DNA MER1_type 11 102 -87 244 286 0 12 chr11 28829033 28829117 -121954436 + G-rich Low_complexity Low_complexity 2 84 0 311 202 11 0 chr11 28830256 28830345 -121953208 + CT-rich Low_complexity Low_complexity 3 92 0 210 91 0 0 chr11 28831460 28831493 -121952060 + (GGGGA)n Simple_repeat Simple_repeat 4 36 0 288 0 0 0 chr11 28832160 28832192 -121951361 + (CA)n Simple_repeat Simple_repeat 2 33 0 465 84 0 0 chr11 28833567 28833638 -121949915 + (TG)n Simple_repeat Simple_repeat 2 72 0 301 311 192 0 chr11 28834185 28834336 -121949217 - MIR SINE MIR -51 211 32 24 32 0 0 chr11 28834434 28834465 -121949088 + AT_rich Low_complexity Low_complexity 1 31 0 285 301 14 0 chr11 28834673 28834746 -121948807 - L3 LINE CR1 -4 1573 1500 277 385 10 0 chr11 28834957 28835053 -121948500 - L2 LINE L2 -36 3236 3140 209 327 64 45 chr11 28835121 28835277 -121948276 + MIR3 SINE MIR 21 179 -29 22 0 0 0 chr11 28836093 28836115 -121947438 + AT_rich Low_complexity Low_complexity 1 22 0 1696 159 76 0 chr11 28836855 28837144 -121946409 + AluSx SINE Alu 2 312 0 1258 177 70 49 chr11 28837161 28837238 -121946315 - Charlie4a DNA MER1_type -1470 491 417 2160 122 7 0 chr11 28837238 28837533 -121946020 + AluSx SINE Alu 1 297 -15 1258 177 70 49 chr11 28837533 28837799 -121945754 - Charlie4a DNA MER1_type -1544 417 141 396 267 0 43 chr11 28838343 28838459 -121945094 - MIR SINE MIR -126 136 26 652 215 107 30 chr11 28838750 28838983 -121944570 - MIR SINE MIR 0 262 12 224 305 37 12 chr11 28840368 28840450 -121943103 - MIR SINE MIR -99 109 26 2436 89 0 0 chr11 28840925 28841228 -121942325 + AluSx SINE Alu 1 303 -9 23 0 0 0 chr11 28841295 28841318 -121942235 + AT_rich Low_complexity Low_complexity 1 23 0 24 32 0 0 chr11 28841541 28841572 -121941981 + AT_rich Low_complexity Low_complexity 1 31 0 653 330 122 6 chr11 28843389 28843701 -121939852 + L3b LINE CR1 1102 1449 -134 248 259 95 52 chr11 28844128 28844244 -121939309 + L2 LINE L2 3191 3311 -2 253 278 52 35 chr11 28847180 28847295 -121936258 + MIR SINE MIR 37 153 -109 286 277 51 87 chr11 28847653 28847848 -121935705 - MER5A DNA MER1_type -1 188 1 261 0 0 0 chr11 28849576 28849605 -121933948 + (T)n Simple_repeat Simple_repeat 1 29 0 261 0 0 0 chr11 28850506 28850535 -121933018 + (T)n Simple_repeat Simple_repeat 1 29 0 288 0 0 0 chr11 28851565 28851597 -121931956 + (TC)n Simple_repeat Simple_repeat 2 33 0 252 143 0 0 chr11 28851597 28851639 -121931914 + (TG)n Simple_repeat Simple_repeat 2 43 0 183 80 0 0 chr11 28851639 28851664 -121931889 + (GA)n Simple_repeat Simple_repeat 2 26 0 23 0 0 0 chr11 28853519 28853542 -121930011 + AT_rich Low_complexity Low_complexity 1 23 0 835 336 96 34 chr11 28855262 28855855 -121927698 + L3 LINE CR1 641 1270 -307 230 244 192 0 chr11 28855981 28856059 -121927494 + L3 LINE CR1 1250 1342 -235 1759 168 0 4 chr11 28856172 28856452 -121927101 + AluJb SINE Alu 1 279 -33 227 77 0 26 chr11 28856453 28856492 -121927061 + (GGAA)n Simple_repeat Simple_repeat 1 38 0 211 298 0 0 chr11 28857220 28857277 -121926276 - L2 LINE L2 0 3272 3216 180 0 0 0 chr11 28858185 28858205 -121925348 + (TG)n Simple_repeat Simple_repeat 1 20 0 1813 94 14 35 chr11 28858651 28858937 -121924616 + L1PA10 LINE L1 5887 6166 -2 382 306 45 30 chr11 28859206 28859408 -121924145 - MIR SINE MIR -32 230 30 26 0 0 0 chr11 28859628 28859654 -121923899 + AT_rich Low_complexity Low_complexity 1 26 0 30868 102 9 56 chr11 28859780 28866218 -121917335 + L1PA7 LINE L1 10 6138 -16 33 43 0 0 chr11 28866218 28866265 -121917288 + AT_rich Low_complexity Low_complexity 1 47 0 291 309 69 51 chr11 28866280 28866455 -121917098 - MER5B DNA MER1_type 0 178 1 554 259 198 15 chr11 28866679 28866876 -121916677 + MIR SINE MIR 30 262 0 341 256 37 0 chr11 28867391 28867473 -121916080 + MIR SINE MIR 33 117 -145 283 285 54 46 chr11 28867925 28868055 -121915498 + L2 LINE L2 3177 3307 -6 10568 114 14 7 chr11 28869411 28871046 -121912507 - L1P LINE L1 -4497 1649 3 1694 165 4 22 chr11 28871572 28871845 -121911708 - AluJo SINE Alu -44 268 1 22 0 0 0 chr11 28872079 28872101 -121911452 + AT_rich Low_complexity Low_complexity 1 22 0 438 264 54 8 chr11 28872669 28872798 -121910755 + MIR SINE MIR 72 206 -56 22 35 0 0 chr11 28873066 28873095 -121910458 + AT_rich Low_complexity Low_complexity 1 29 0 2094 140 3 56 chr11 28873480 28873836 -121909717 + MER1B DNA MER1_type 1 337 0 1564 107 14 5 chr11 28874124 28874340 -121909213 + AluSg/x SINE Alu 85 302 -10 370 254 71 47 chr11 28874819 28874988 -121908565 - L2 LINE L2 -712 2602 2430 298 118 0 0 chr11 28875549 28875600 -121907953 - AluSp/q SINE Alu -1 302 252 * 352 165 51 0 chr11 28875595 28875674 -121907879 + HsTC2 DNA Tc2 1816 1898 0 180 0 0 0 chr11 28876685 28876705 -121906848 + (CA)n Simple_repeat Simple_repeat 1 20 0 296 327 168 0 chr11 28877027 28877140 -121906413 + MIR3 SINE MIR 36 167 -41 211 102 41 20 chr11 28879062 28879111 -121904442 + (TTTG)n Simple_repeat Simple_repeat 3 52 0 204 237 0 17 chr11 28881040 28881099 -121902454 + T-rich Low_complexity Low_complexity 2 59 0 24 77 0 0 chr11 28881257 28881309 -121902244 + AT_rich Low_complexity Low_complexity 1 52 0 31 68 0 0 chr11 28881369 28881428 -121902125 + AT_rich Low_complexity Low_complexity 1 59 0 943 193 34 0 chr11 28884539 28884715 -121898838 + MER5A DNA MER1_type 8 189 0 902 205 29 19 chr11 28886664 28886893 -121896660 + MIR SINE MIR 21 252 -10 558 276 42 36 chr11 28887388 28887580 -121895973 - MIR SINE MIR -21 241 49 476 302 148 10 chr11 28888565 28888767 -121894786 - MIR SINE MIR -25 237 8 553 185 81 64 chr11 28888768 28888880 -121894673 + MER5B DNA MER1_type 3 121 -57 2855 13 0 0 chr11 28888880 28889193 -121894360 - AluYb8 SINE Alu -4 314 2 553 185 81 64 chr11 28889193 28889253 -121894300 + MER5B DNA MER1_type 121 178 0 251 314 51 64 chr11 28890409 28890565 -121892988 + L2 LINE L2 2551 2704 -610 349 270 90 0 chr11 28890879 28890990 -121892563 - MIR SINE MIR -94 168 48 312 91 0 0 chr11 28891038 28891082 -121892471 + (TGGA)n Simple_repeat Simple_repeat 1 44 0 197 335 80 35 chr11 28891115 28891315 -121892238 + L2 LINE L2 2749 2957 -357 479 196 23 0 chr11 28891379 28891512 -121892041 - MER53 DNA DNA -53 136 1 1743 172 0 30 chr11 28891730 28892026 -121891527 + AluJo SINE Alu 1 287 -25 184 218 136 73 chr11 28892320 28892430 -121891123 + L2 LINE L2 3156 3272 0 671 224 17 62 chr11 28892543 28892722 -121890831 + MER5B DNA MER1_type 2 172 -6 368 312 15 79 chr11 28893341 28893478 -121890075 + MIR3 SINE MIR 14 135 -73 1175 189 80 117 chr11 28893478 28893854 -121889699 - MLT1A1 LTR MaLR -2 363 2 368 312 15 79 chr11 28893854 28893918 -121889635 + MIR3 SINE MIR 135 202 -6 569 317 24 0 chr11 28894026 28894193 -121889360 + MIR3 SINE MIR 24 194 -14 207 161 0 0 chr11 28894355 28894386 -121889167 + polypurine Low_complexity Low_complexity 1 31 0 511 272 63 11 chr11 28895148 28895339 -121888214 + MIR SINE MIR 6 206 -56 395 238 154 42 chr11 28895743 28895886 -121887667 - MIR SINE MIR -102 160 2 1959 153 0 0 chr11 28895919 28896207 -121887346 - AluSx SINE Alu -24 288 1 382 277 92 0 chr11 28896599 28896718 -121886835 + MIR3 SINE MIR 73 202 -6 2931 178 73 68 chr11 28897234 28897921 -121885632 + LTR8 LTR ERV1 2 691 0 3333 98 162 0 chr11 28897921 28898434 -121885119 + HUERS-P1 LTR ERV1 1 596 -5667 365 320 90 34 chr11 28898599 28898833 -121884720 - MIR SINE MIR -9 253 7 416 241 145 36 chr11 28898856 28899022 -121884531 + MIR SINE MIR 79 262 0 288 368 32 32 chr11 28899452 28899577 -121883976 - L2 LINE L2 -23 3249 3125 191 294 109 25 chr11 28900690 28900809 -121882744 + MIR3 SINE MIR 32 160 -48 235 298 85 64 chr11 28900824 28900965 -121882588 - MER5A DNA MER1_type -24 165 22 2735 207 23 15 chr11 28901099 28901620 -121881933 - MLT1F LTR MaLR -2 540 16 429 335 97 6 chr11 28902014 28902190 -121881363 - MIR SINE MIR -37 225 34 230 288 41 27 chr11 28902830 28902903 -121880650 - MIR SINE MIR -21 241 168 181 324 15 15 chr11 28902960 28903028 -121880525 - MIR3 SINE MIR -7 201 134 246 297 184 0 chr11 28903439 28903566 -121879987 + MIR SINE MIR 2 149 -62 451 309 63 0 chr11 28904141 28904267 -121879286 + MIR SINE MIR 108 241 -21 221 293 17 0 chr11 28904289 28904347 -121879206 + L2 LINE L2 3211 3269 -3 249 262 224 9 chr11 28904599 28904706 -121878847 - MIR SINE MIR -60 148 19 403 188 70 10 chr11 28905149 28905249 -121878304 + MER21B LTR ERV1 3 106 -757 * 469 169 0 0 chr11 28905247 28905318 -121878235 + MER21B LTR ERV1 19 89 -774 3446 198 93 7 chr11 28905319 28906068 -121877485 + MER21B LTR ERV1 41 854 -9 415 253 0 96 chr11 28906233 28906379 -121877174 + MIR SINE MIR 53 184 -78 2034 164 49 0 chr11 28906392 28906721 -121876832 - MER7A DNA MER2_type -2 344 2 183 324 27 18 chr11 28907273 28907384 -121876169 + L3b LINE CR1 1219 1330 -253 949 298 8 0 chr11 28907427 28907685 -121875868 + MIR SINE MIR 1 260 -2 2181 120 23 0 chr11 28908087 28908386 -121875167 - AluSx SINE Alu -2 310 5 248 156 0 44 chr11 28909461 28909506 -121874047 + MLT2A2 LTR ERVL 93 135 -318 533 210 154 43 chr11 28910051 28910213 -121873340 - MER5A DNA MER1_type -6 183 4 239 276 35 69 chr11 28910252 28910339 -121873214 - MER5B DNA MER1_type -58 120 37 2098 142 24 35 chr11 28910628 28911001 -121872552 + MLT1B LTR MaLR 22 390 0 346 327 9 0 chr11 28911066 28911179 -121872374 + MIR3 SINE MIR 65 178 -30 312 340 34 48 chr11 28911472 28911619 -121871934 - MIR3 SINE MIR -46 162 18 2208 109 118 12 chr11 28912799 28913128 -121870425 - THE1B LTR MaLR 0 364 1 21 0 0 0 chr11 28913825 28913846 -121869707 + AT_rich Low_complexity Low_complexity 1 21 0 428 313 84 69 chr11 28914050 28914382 -121869171 - L2 LINE L2 0 3272 2936 237 324 0 0 chr11 28915935 28916006 -121867547 - L2 LINE L2 -2 3311 3241 416 253 27 163 chr11 28916741 28916998 -121866555 - MIR SINE MIR 0 262 41 305 238 248 0 chr11 28917093 28917198 -121866355 - MIR SINE MIR -62 146 16 28 0 0 0 chr11 28918348 28918376 -121865177 + AT_rich Low_complexity Low_complexity 1 28 0 586 184 0 0 chr11 28918456 28918559 -121864994 - L1MA10 LINE L1 -37 6297 6195 199 308 128 0 chr11 28918590 28918668 -121864885 + MIR SINE MIR 78 165 -97 2498 39 0 0 chr11 28918668 28918951 -121864602 + AluY SINE Alu 1 283 -28 201 211 0 99 chr11 28919443 28919514 -121864039 + L3 LINE CR1 1162 1225 -352 222 274 245 0 chr11 28919527 28919633 -121863920 - L2 LINE L2 0 3313 3182 416 343 97 46 chr11 28919807 28920198 -121863355 + MLT1K LTR MaLR 147 557 -31 335 303 199 17 chr11 28920401 28920642 -121862911 + L3 LINE CR1 1220 1504 -73 402 303 66 71 chr11 28920676 28920887 -121862666 - L2 LINE L2 0 3272 3063 268 287 23 0 chr11 28921163 28921250 -121862303 - MIR SINE MIR 0 262 174 716 255 118 10 chr11 28921915 28922119 -121861434 + MIR SINE MIR 37 262 0 566 238 12 19 chr11 28922193 28922353 -121861200 - L2 LINE L2 -7 3306 3148 780 289 135 53 chr11 28922549 28922779 -121860774 + L2 LINE L2 2483 2693 -620 2171 127 3 0 chr11 28922779 28923087 -121860466 + AluSx SINE Alu 1 309 -3 780 289 135 53 chr11 28923087 28923641 -121859912 + L2 LINE L2 2693 3313 0 11869 127 29 14 chr11 28923993 28925835 -121857718 + Tigger1 DNA MER2_type 548 2418 0 295 229 0 19 chr11 28927757 28927862 -121855691 + CT-rich Low_complexity Low_complexity 3 105 0 655 188 168 48 chr11 28928840 28928924 -121854629 - MER33 DNA MER1_type -2352 233 160 330 26 0 0 chr11 28928924 28928963 -121854590 + (TG)n Simple_repeat Simple_repeat 2 40 0 655 188 168 48 chr11 28928963 28929086 -121854467 - MER33 DNA MER1_type -2425 160 1 333 265 90 60 chr11 28929212 28929378 -121854175 - MIR SINE MIR -86 176 6 321 103 52 35 chr11 28929457 28929515 -121854038 - MER103 DNA DNA -49 117 59 529 220 21 43 chr11 28930100 28930241 -121853312 - MIR SINE MIR -97 165 28 2799 140 5 29 chr11 28930305 28930748 -121852805 - L1PB3 LINE L1 0 6154 5723 2634 156 5 26 chr11 28930748 28931392 -121852161 - L1PB3 LINE L1 -706 5445 4810 204 40 0 0 chr11 28931434 28931459 -121852094 + (TG)n Simple_repeat Simple_repeat 1 25 0 280 279 83 106 chr11 28932706 28932960 -121850593 - MIR SINE MIR -2 260 13 935 265 143 25 chr11 28932965 28933516 -121850037 - L2 LINE L2 0 3313 2697 1985 216 120 128 chr11 28933534 28933897 -121849656 + L1MC4a LINE L1 6604 6968 -840 279 93 0 0 chr11 28933897 28933940 -121849613 + (TAAA)n Simple_repeat Simple_repeat 4 46 0 1985 216 120 128 chr11 28933940 28934287 -121849266 + L1MC4a LINE L1 6968 7316 -492 930 69 0 0 chr11 28934287 28934403 -121849150 + AluSp/q SINE Alu 190 305 -8 1985 216 120 128 chr11 28934403 28934791 -121848762 + L1MC4a LINE L1 7316 7808 0 1057 231 32 12 chr11 28934836 28935087 -121848466 - L2 LINE L2 -627 2687 2432 418 272 30 99 chr11 28935108 28935199 -121848354 - MIR SINE MIR -46 216 120 672 275 108 33 chr11 28935199 28935439 -121848114 - MIR SINE MIR -3 259 2 418 272 30 99 chr11 28935439 28935579 -121847974 - MIR SINE MIR -142 120 1 597 310 56 15 chr11 28936247 28936444 -121847109 + MIR SINE MIR 23 227 -35 281 345 31 42 chr11 28937652 28937913 -121845640 - L1ME LINE L1 -285 5881 5624 * 325 298 77 23 chr11 28937906 28938164 -121845389 + L1M2 LINE L1 5318 5587 -591 29 60 0 0 chr11 28938195 28938245 -121845308 + AT_rich Low_complexity Low_complexity 1 50 0 2128 122 0 0 chr11 28938271 28938574 -121844979 + AluSg SINE Alu 1 303 0 1150 147 11 0 chr11 28938574 28938764 -121844789 + L1MA4A LINE L1 6112 6303 0 232 364 0 0 chr11 28938793 28938859 -121844694 - L2 LINE L2 -49 3264 3199 339 265 12 0 chr11 28938876 28938959 -121844594 + L2 LINE L2 3189 3272 0 526 267 12 25 chr11 28939158 28939319 -121844234 - MIR SINE MIR -90 172 14 202 320 244 13 chr11 28940022 28940100 -121843453 + L2 LINE L2 3134 3229 -43 1925 128 24 0 chr11 28940581 28940878 -121842675 - AluSx SINE Alu -8 304 1 377 322 17 63 chr11 28940878 28941052 -121842501 - L2 LINE L2 -6 3266 3101 2063 202 31 49 chr11 28941121 28941635 -121841918 - MLT1D LTR MaLR 0 505 1 321 154 15 15 chr11 28941639 28941704 -121841849 + L2 LINE L2 3207 3271 -1 658 167 24 8 chr11 28942269 28942395 -121841158 + L2 LINE L2 3186 3313 0 * 756 268 48 10 chr11 28942374 28942583 -121840970 + MIR SINE MIR 11 227 -35 314 328 9 43 chr11 28943223 28943342 -121840211 - L2 LINE L2 0 3272 3161 725 137 16 33 chr11 28943743 28943925 -121839628 + CT-rich Low_complexity Low_complexity 2 180 0 361 267 0 0 chr11 28946267 28946342 -121837211 + MER5A DNA MER1_type 1 75 -114 324 81 129 0 chr11 28946367 28946429 -121837124 - L1MA7 LINE L1 -11 6280 6211 2032 164 15 22 chr11 28946464 28946866 -121836687 - L1MA7 LINE L1 -315 5976 5578 554 250 101 27 chr11 28947855 28948043 -121835510 + MIR SINE MIR 61 262 0 352 252 156 7 chr11 28948058 28948193 -121835360 + MIR SINE MIR 98 252 -10 654 217 111 57 chr11 28948513 28948863 -121834690 - HAL1 LINE L1 -72 2435 2067 309 296 22 0 chr11 28948914 28949049 -121834504 + LTR37A LTR ERV1 47 184 -242 2075 205 60 33 chr11 28949053 28949671 -121833882 + MLT1E2 LTR MaLR 1 624 -2 463 247 56 6 chr11 28949720 28949898 -121833655 + LTR37A LTR ERV1 240 426 0 1469 273 88 28 chr11 28949916 28950586 -121832967 - HAL1 LINE L1 -475 2032 1323 1138 321 142 32 chr11 28950593 28951780 -121831773 + L2 LINE L2 1948 3269 -44 521 279 58 21 chr11 28951824 28952014 -121831539 + MIR SINE MIR 51 247 -15 391 259 59 71 chr11 28952313 28952552 -121831001 + MLT1L LTR MaLR 91 326 -289 232 291 74 27 chr11 28954848 28954950 -121828603 + L2 LINE L2 2608 2721 -593 1602 159 22 12 chr11 28954950 28955271 -121828282 - MER33 DNA MER1_type 0 324 1 232 291 74 27 chr11 28955271 28955316 -121828237 + L2 LINE L2 2721 2762 -552 319 265 143 0 chr11 28955349 28955447 -121828106 + L2 LINE L2 3196 3307 -6 29 0 0 0 chr11 28955660 28955689 -121827864 + AT_rich Low_complexity Low_complexity 1 29 0 2456 183 24 36 chr11 28955771 28956274 -121827279 - MLT1D LTR MaLR -4 501 5 1194 261 64 50 chr11 28956516 28957075 -121826478 + MLT1F1 LTR MaLR 1 567 0 760 141 28 11 chr11 28957077 28957254 -121826299 + CT-rich Low_complexity Low_complexity 1 180 0 281 289 73 21 chr11 29007339 29007800 -121775753 - L1ME LINE L1 -4885 1487 1015 1505 155 77 19 chr11 29007821 29008144 -121775409 - MER2 DNA MER2_type -1 343 2 378 201 31 16 chr11 29008706 29008823 -121774730 - L1ME LINE L1 -5956 416 194 1829 182 3 0 chr11 29009540 29009837 -121773716 + AluJb SINE Alu 1 298 -14 405 280 42 55 chr11 29009870 29010177 -121773376 - L1ME LINE L1 -364 5757 5455 339 230 86 99 chr11 29010179 29010331 -121773222 - L1MC5 LINE L1 -52 7909 7760 1730 38 9 0 chr11 29010332 29010543 -121773010 + L1PA4 LINE L1 5943 6155 0 21 0 0 0 chr11 29010543 29010564 -121772989 + AT_rich Low_complexity Low_complexity 1 21 0 550 222 56 12 chr11 29010586 29010748 -121772805 + MER58 DNA MER1_type 20 188 -2232 286 160 80 60 chr11 29010827 29010927 -121772626 - L1MC5 LINE L1 -317 7644 7543 327 118 0 0 chr11 29010983 29011034 -121772519 - MADE1 DNA Mariner 0 80 30 2764 267 62 31 chr11 29011230 29012322 -121771231 - L2 LINE L2 -1 3312 2175 23 68 0 0 chr11 29013118 29013162 -121770391 + AT_rich Low_complexity Low_complexity 1 44 0 25 31 0 0 chr11 29014885 29014917 -121768636 + AT_rich Low_complexity Low_complexity 1 32 0 182 378 104 7 chr11 29014929 29015064 -121768489 + L2 LINE L2 2610 2757 -557 453 311 19 14 chr11 29015646 29015855 -121767698 - L1ME LINE L1 -341 5780 5571 217 244 0 0 chr11 29016043 29016088 -121767465 + (CATATA)n Simple_repeat Simple_repeat 6 50 0 332 327 9 0 chr11 29016491 29016604 -121766949 + MER94 DNA DNA 7 120 -14 427 281 31 16 chr11 29016750 29016878 -121766675 - MIR SINE MIR -62 146 17 1385 170 111 3 chr11 29016985 29017291 -121766262 - MER44D DNA MER2_type 0 609 1 284 290 19 9 chr11 29017333 29017440 -121766113 + MLT1G1 LTR MaLR 7 114 -481 695 315 36 9 chr11 29018045 29018264 -121765289 - MIR SINE MIR -36 226 2 784 220 72 68 chr11 29018983 29019219 -121764334 + MIR SINE MIR 13 249 -13 524 277 27 96 chr11 29019625 29019732 -121763821 + MIR SINE MIR 41 127 -135 1766 192 0 26 chr11 29019732 29020034 -121763519 + AluJb SINE Alu 3 296 -16 524 277 27 96 chr11 29020034 29020146 -121763407 + MIR SINE MIR 127 245 -17 358 301 106 0 chr11 29020302 29020501 -121763052 - L2 LINE L2 -221 3051 2832 692 234 141 35 chr11 29021027 29021254 -121762299 + MIR SINE MIR 7 257 -5 21 57 0 0 chr11 29021495 29021530 -121762023 + AT_rich Low_complexity Low_complexity 1 35 0 25 31 0 0 chr11 29021537 29021569 -121761984 + AT_rich Low_complexity Low_complexity 1 32 0 235 241 0 35 chr11 29021931 29021989 -121761564 - MIR SINE MIR -136 72 17 419 324 82 0 chr11 29022030 29022200 -121761353 - L2 LINE L2 -3 3269 3086 492 314 238 0 chr11 29022590 29022775 -121760778 + MIR SINE MIR 34 262 0 265 330 0 0 chr11 29022999 29023090 -121760463 + MLT1H1 LTR MaLR 5 95 -460 360 233 89 8 chr11 29023204 29023328 -121760225 + MLT1H1 LTR MaLR 157 293 -280 320 229 189 10 chr11 29023377 29023534 -121760019 + MLT1G1 LTR MaLR 408 593 -2 449 330 87 52 chr11 29023863 29024149 -121759404 - L2 LINE L2 -5 3267 2950 494 314 75 4 chr11 29024149 29024388 -121759165 + MIR SINE MIR 5 260 -2 449 330 87 52 chr11 29024388 29024573 -121758980 - L2 LINE L2 -322 2950 2773 1975 123 89 60 chr11 29024639 29024859 -121758694 - MSTA LTR MaLR 0 428 216 2048 120 0 7 chr11 29024859 29025162 -121758391 - AluSx SINE Alu 0 301 1 1975 123 89 60 chr11 29025162 29025356 -121758197 - MSTA LTR MaLR -212 216 1 352 336 9 58 chr11 29025618 29025841 -121757712 - L2 LINE L2 -553 2761 2550 211 219 0 62 chr11 29025991 29026055 -121757498 - L2 LINE L2 0 3313 3254 504 261 14 14 chr11 29027262 29027401 -121756152 - MIR SINE MIR -31 177 32 793 210 20 115 chr11 29027742 29027837 -121755716 - MER45C DNA AcHobo -628 953 851 1877 153 10 10 chr11 29027837 29028145 -121755408 + AluJb SINE Alu 1 308 -4 793 210 20 115 chr11 29028145 29028301 -121755252 - MER45C DNA AcHobo -730 851 726 1758 179 3 3 chr11 29029337 29029639 -121753914 - AluJo SINE Alu -10 302 1 1190 117 35 0 chr11 29029756 29029953 -121753600 + MLT1B LTR MaLR 1 204 -186 659 263 0 25 chr11 29029953 29030151 -121753402 - L1ME2 LINE L1 -112 6052 5860 932 114 8 0 chr11 29030152 29030283 -121753270 - AluJb SINE Alu -180 132 1 4198 214 88 42 chr11 29030289 29032284 -121751269 - L1MC4 LINE L1 -743 5403 3797 403 231 0 0 chr11 29032321 29032399 -121751154 + LTR50 LTR ERVL 393 470 -325 540 305 13 0 chr11 29032525 29032676 -121750877 - L3 LINE CR1 -1 1576 1424 836 269 45 21 chr11 29033045 29033287 -121750266 + MIR SINE MIR 8 255 -7 2478 130 47 5 chr11 29033887 29034294 -121749259 - MSTA LTR MaLR 0 428 5 2266 93 3 3 chr11 29034391 29034681 -121748872 + AluSc SINE Alu 1 290 -19 472 248 26 0 chr11 29034769 29034882 -121748671 - MIR SINE MIR -116 146 31 1899 192 55 47 chr11 29035075 29035548 -121748005 + MLT2B1 LTR ERVL 5 481 -39 285 98 0 0 chr11 29035563 29035604 -121747949 + (TG)n Simple_repeat Simple_repeat 2 42 0 346 105 0 0 chr11 29035613 29035670 -121747883 + MLT2B1 LTR ERVL 464 520 0 431 196 29 0 chr11 29036384 29036486 -121747067 - MER69 DNA AcHobo -386 2140 2036 2054 241 41 25 chr11 29036493 29037052 -121746501 - MER69 DNA AcHobo -1958 568 1 23 33 0 0 chr11 29037132 29037162 -121746391 + AT_rich Low_complexity Low_complexity 1 30 0 2192 81 14 11 chr11 29037601 29037884 -121745669 - AluSc SINE Alu -17 292 9 3627 101 11 2 chr11 29038097 29038621 -121744932 - MER41A LTR ERV1 -23 531 3 8772 95 26 6 chr11 29038622 29039952 -121743601 - MER41A-int LTR ERV1 0 5946 4590 2567 140 91 26 chr11 29039949 29040522 -121743031 - MER41A-int LTR ERV1 -1542 3473 2864 * 4417 123 71 1 chr11 29040518 29041251 -121742302 - MER41A-int LTR ERV1 -3000 2946 2163 788 85 0 8 chr11 29041243 29041361 -121742192 - MER41A-int LTR ERV1 -3929 2017 1901 * 2175 120 63 0 chr11 29041362 29041713 -121741840 - MER41A-int LTR ERV1 -4184 1762 1390 2467 161 29 5 chr11 29041715 29042161 -121741392 - MER41A-int LTR ERV1 -7299 457 1 3384 123 32 0 chr11 29042167 29042697 -121740856 - MER41A LTR ERV1 -7 547 1 238 320 13 13 chr11 29042762 29042840 -121740713 - MER5B DNA MER1_type -37 141 64 198 300 0 17 chr11 29042865 29042925 -121740628 + L2 LINE L2 3255 3313 0 272 233 137 0 chr11 29043033 29043106 -121740447 - L2 LINE L2 -1 3312 3230 233 273 23 23 chr11 29044593 29044681 -121738872 - MIR3 SINE MIR -15 193 106 2121 168 12 16 chr11 29044792 29045221 -121738332 - L1MC3 LINE L1 -15 7770 7344 376 313 55 37 chr11 29045221 29045384 -121738169 - MIR SINE MIR -96 166 1 261 139 0 0 chr11 29045468 29045511 -121738042 + (TAGG)n Simple_repeat Simple_repeat 1 43 0 1968 137 20 0 chr11 29045960 29046082 -121737471 + AluSx SINE Alu 1 119 -193 207 0 0 0 chr11 29046082 29046105 -121737448 + (CA)n Simple_repeat Simple_repeat 2 24 0 1968 137 20 0 chr11 29046105 29046275 -121737278 + AluSx SINE Alu 119 299 -13 341 322 88 57 chr11 29046843 29047194 -121736359 - MLT1K LTR MaLR -215 373 12 422 201 75 44 chr11 29047390 29047549 -121736004 - MER103 DNA DNA -2 164 1 1804 262 103 32 chr11 29047784 29047930 -121735623 - MER20B DNA MER1_type -10 773 639 185 81 0 27 chr11 29047930 29047967 -121735586 + (TAAAA)n Simple_repeat Simple_repeat 3 38 0 1804 262 103 32 chr11 29047967 29048541 -121735012 - MER20B DNA MER1_type -144 639 2 42165 38 0 2 chr11 29048646 29054816 -121728737 + L1PA3 LINE L1 8 6165 0 696 258 82 6 chr11 29055265 29055447 -121728106 + MIR SINE MIR 47 242 -20 2401 103 0 0 chr11 29055685 29055995 -121727558 + AluSx SINE Alu 2 311 -1 339 161 16 0 chr11 29056045 29056107 -121727446 + MIR SINE MIR 60 122 -86 314 304 68 68 chr11 29056439 29056630 -121726923 - MIR SINE MIR -52 210 20 235 254 73 0 chr11 29056693 29056748 -121726805 - MIR SINE MIR -72 190 132 230 362 147 9 chr11 29057296 29057412 -121726141 - L2 LINE L2 -8 3264 3133 828 223 59 25 chr11 29057431 29057633 -121725920 + MIR SINE MIR 29 237 -25 802 158 0 15 chr11 29057934 29058067 -121725486 - FLAM_C SINE Alu -12 131 1 489 325 10 41 chr11 29058077 29058271 -121725282 - MIR SINE MIR -70 192 5 827 229 112 87 chr11 29059218 29059712 -121723841 - MLT1H1 LTR MaLR -2 553 50 633 311 29 0 chr11 29059801 29060007 -121723546 - MIR SINE MIR -4 258 47 354 344 13 13 chr11 29060570 29060724 -121722829 - L2 LINE L2 -1 3312 3159 196 325 175 0 chr11 29061698 29061778 -121721775 - L2 LINE L2 -8 3264 3171 411 292 8 0 chr11 29061865 29061985 -121721568 - MLT1I LTR MaLR -4 405 285 309 261 27 9 chr11 29062060 29062171 -121721382 - MLT1I LTR MaLR -249 160 48 1790 292 129 22 chr11 29062711 29063043 -121720510 - L2 LINE L2 -69 3244 2949 875 87 79 0 chr11 29063043 29063170 -121720383 - MER85 DNA T2_type 0 139 3 1790 292 129 22 chr11 29063170 29063711 -121719842 - L2 LINE L2 -364 2949 2244 317 250 50 0 chr11 29064727 29064807 -121718746 - L2 LINE L2 -50 3263 3180 291 294 111 8 chr11 29065111 29065237 -121718316 - MIR SINE MIR -36 226 88 1700 251 27 47 chr11 29065460 29065973 -121717580 + LTR33 LTR ERVL 19 521 0 284 392 19 24 chr11 29066709 29066918 -121716635 + L2 LINE L2 2601 2808 -506 2314 116 129 5 chr11 29067058 29067439 -121716114 - MSTA LTR MaLR 0 428 1 538 293 88 26 chr11 29067643 29067875 -121715678 - MIR SINE MIR -11 251 9 243 263 113 75 chr11 29067948 29068071 -121715482 - MIR SINE MIR -50 212 78 2045 120 18 82 chr11 29068071 29068471 -121715082 + THE1C LTR MaLR 1 374 -1 243 263 113 75 chr11 29068471 29068533 -121715020 - MIR SINE MIR -184 78 20 34 24 0 0 chr11 29068810 29068851 -121714702 + AT_rich Low_complexity Low_complexity 1 41 0 347 235 20 0 chr11 29069394 29069492 -121714061 + MIR3 SINE MIR 105 204 -4 366 265 179 0 chr11 29069657 29069774 -121713779 + MIR3 SINE MIR 9 146 -62 332 287 23 32 chr11 29069854 29069957 -121713596 + MIR SINE MIR 20 119 -104 233 293 12 24 chr11 29070090 29070172 -121713381 - L2 LINE L2 -1 3312 3232 1920 134 10 10 chr11 29070458 29070757 -121712796 - AluSx SINE Alu -13 299 1 407 375 0 0 chr11 29070819 29070979 -121712574 + MIR SINE MIR 22 181 -81 835 167 0 0 chr11 29070991 29071117 -121712436 + FLAM_C SINE Alu 1 126 -17 220 259 12 59 chr11 29071150 29071235 -121712318 + MIR SINE MIR 179 259 -3 762 274 47 35 chr11 29072648 29072903 -121710650 - MIR SINE MIR -4 258 1 318 282 12 0 chr11 29072929 29073014 -121710539 + MIR3 SINE MIR 112 197 -11 314 296 11 45 chr11 29073451 29073630 -121709923 + C-rich Low_complexity Low_complexity 2 174 0 24 0 0 0 chr11 29073989 29074013 -121709540 + AT_rich Low_complexity Low_complexity 1 24 0 210 366 30 0 chr11 29075386 29075487 -121708066 + MIR SINE MIR 37 140 -122 269 265 24 0 chr11 29075534 29075617 -121707936 + MER94 DNA DNA 1 85 -49 22157 37 0 0 chr11 29077129 29080533 -121703020 + L1PA3 LINE L1 2529 5932 -223 4729 30 0 0 chr11 29080633 29081190 -121702363 + L1PA4 LINE L1 5592 6148 -7 31 26 0 0 chr11 29081190 29081228 -121702325 + AT_rich Low_complexity Low_complexity 1 38 0 2322 89 3 16 chr11 29081296 29081611 -121701942 - AluY SINE Alu 0 311 1 594 115 35 0 chr11 29081888 29082001 -121701552 + L1MC3 LINE L1 6981 7097 -688 235 333 10 0 chr11 29082001 29082097 -121701456 + MLT1F1 LTR MaLR 35 131 -436 2878 165 26 14 chr11 29082097 29082601 -121700952 + L1MC3 LINE L1 7196 7709 -76 1950 188 11 6 chr11 29082601 29082963 -121700590 - MLT1A1 LTR MaLR 0 365 2 2878 165 26 14 chr11 29082963 29083040 -121700513 + L1MC3 LINE L1 7709 7784 -1 23 54 0 0 chr11 29083049 29083086 -121700467 + AT_rich Low_complexity Low_complexity 1 37 0 265 269 144 38 chr11 29083445 29083605 -121699948 + MIR SINE MIR 84 260 -2 1651 203 0 29 chr11 29084043 29084353 -121699200 + AluJo SINE Alu 1 301 -11 24 0 0 0 chr11 29084397 29084421 -121699132 + AT_rich Low_complexity Low_complexity 1 24 0 217 413 37 10 chr11 29084710 29084890 -121698663 - MIR SINE MIR -56 206 21 3890 119 38 2 chr11 29085169 29085780 -121697773 + MER41B LTR ERV1 3 635 0 27 29 0 0 chr11 29086586 29086620 -121696933 + AT_rich Low_complexity Low_complexity 1 34 0 211 365 135 17 chr11 29086866 29087222 -121696331 + L2 LINE L2 2579 2976 -338 1334 51 45 0 chr11 29087388 29087566 -121695987 + L1PA4 LINE L1 5970 6155 0 219 295 82 66 chr11 29087749 29087871 -121695682 + L2 LINE L2 3132 3255 -17 421 261 17 0 chr11 29088703 29088822 -121694731 + LTR67 LTR ERVL 435 555 -2 2010 148 3 0 chr11 29089069 29089367 -121694186 - AluSx SINE Alu -13 299 1 1446 157 52 7 chr11 29089825 29090131 -121693422 + L1MA7 LINE L1 4584 4903 -1243 4323 154 52 47 chr11 29090232 29091307 -121692246 + L1MA7 LINE L1 5197 6289 -2 207 0 0 0 chr11 29092295 29092318 -121691235 + (GA)n Simple_repeat Simple_repeat 2 24 0 1742 158 12 98 chr11 29092910 29093310 -121690243 + MER47A DNA MER2_type 1 366 0 506 314 64 36 chr11 29093635 29093855 -121689698 + MIR SINE MIR 29 254 -8 1588 154 11 0 chr11 29094471 29094737 -121688816 + AluSx SINE Alu 44 312 0 316 210 177 0 chr11 29094743 29094867 -121688686 + MER20B DNA MER1_type 516 661 -122 220 171 0 0 chr11 29095514 29095549 -121688004 + (TCCA)n Simple_repeat Simple_repeat 4 38 0 1683 202 55 3 chr11 29097711 29098058 -121685495 - MLT1A1 LTR MaLR 0 365 1 589 298 98 9 chr11 29098339 29098554 -121684999 - MIR SINE MIR 0 262 29 24 0 0 0 chr11 29098681 29098705 -121684848 + AT_rich Low_complexity Low_complexity 1 24 0 320 237 69 116 chr11 29098808 29099040 -121684513 + MER112 DNA MER1_type 3 223 -37 636 232 135 43 chr11 29099044 29099229 -121684324 - MIR SINE MIR -31 231 30 516 323 123 55 chr11 29099636 29100335 -121683218 + L2 LINE L2 2580 3308 -5 21 0 0 0 chr11 29100441 29100462 -121683091 + AT_rich Low_complexity Low_complexity 1 21 0 310 216 68 0 chr11 29101953 29102027 -121681526 + HAL1b LINE L1 397 475 -873 21 0 0 0 chr11 29102360 29102381 -121681172 + AT_rich Low_complexity Low_complexity 1 21 0 435 232 0 0 chr11 29103472 29103554 -121679999 - Tigger3(Golem) DNA MER2_type -1 3028 2947 * 1982 155 155 3 chr11 29103550 29103931 -121679622 - Tigger3(Golem) DNA MER2_type -2589 440 2 602 139 19 28 chr11 29105239 29105347 -121678206 + AluJb SINE Alu 35 141 -171 348 111 0 0 chr11 29105367 29105430 -121678123 + (CATA)n Simple_repeat Simple_repeat 2 64 0 34 24 0 0 chr11 29105431 29105472 -121678081 + AT_rich Low_complexity Low_complexity 1 41 0 2376 63 7 0 chr11 29106055 29106356 -121677197 - AluY SINE Alu -8 303 1 417 280 37 0 chr11 29106615 29106722 -121676831 - MIR SINE MIR -118 144 34 517 302 29 17 chr11 29107168 29107340 -121676213 + MER5B DNA MER1_type 2 175 -3 1767 218 180 3 chr11 29107784 29108724 -121674829 + L1MC4a LINE L1 6810 8042 0 227 313 73 21 chr11 29109094 29109190 -121674363 + L2 LINE L2 2282 2382 -932 226 323 125 69 chr11 29109463 29109838 -121673715 + L2 LINE L2 2858 3253 -19 1642 186 13 10 chr11 29109969 29110280 -121673273 + AluJo SINE Alu 1 312 0 487 144 22 0 chr11 29110354 29110444 -121673109 + AluY SINE Alu 219 310 -1 911 168 12 0 chr11 29111258 29111419 -121672134 - L1PA15 LINE L1 -8 6157 5995 221 210 16 0 chr11 29112366 29112428 -121671125 + (CATA)n Simple_repeat Simple_repeat 2 64 0 269 139 0 14 chr11 29113076 29113148 -121670405 + (CAAAAA)n Simple_repeat Simple_repeat 1 71 0 3400 140 63 28 chr11 29113204 29113853 -121669700 + L1MA7 LINE L1 5620 6291 0 1477 240 150 39 chr11 29113883 29114514 -121669039 - L2 LINE L2 -285 3028 2286 599 270 207 11 chr11 29114596 29114866 -121668687 - L2 LINE L2 -1317 1997 1675 388 223 97 0 chr11 29115132 29115235 -121668318 + MIR SINE MIR 84 196 -66 346 225 12 150 chr11 29115357 29115517 -121668036 - MER20B DNA MER1_type -604 179 42 5276 82 25 8 chr11 29115920 29116673 -121666880 + MER4E LTR ERV1 1 766 0 947 183 113 5 chr11 29117250 29117463 -121666090 + MER46A DNA MER2_type 1 236 0 284 300 11 22 chr11 29117532 29117622 -121665931 + MIR3 SINE MIR 116 204 -4 503 262 117 0 chr11 29117880 29118025 -121665528 + L2 LINE L2 3152 3313 0 470 276 77 57 chr11 29118323 29118569 -121664984 - MIR SINE MIR 0 262 12 473 178 146 61 chr11 29118662 29118894 -121664659 - L1MA9 LINE L1 -22 6290 5953 463 299 41 46 chr11 29119046 29119240 -121664313 - MIR SINE MIR 0 262 70 231 254 45 0 chr11 29119376 29119443 -121664110 + L2 LINE L2 2718 2787 -527 198 0 0 0 chr11 29119789 29119811 -121663742 + (A)n Simple_repeat Simple_repeat 1 22 0 2014 125 0 0 chr11 29119926 29120215 -121663338 + AluSx SINE Alu 1 289 -23 197 276 52 0 chr11 29122262 29122320 -121661233 - L2 LINE L2 -66 3247 3187 375 226 47 19 chr11 29122642 29122748 -121660805 - MIR SINE MIR -36 226 118 788 258 127 0 chr11 29124855 29125084 -121658469 + MIR SINE MIR 5 262 0 341 194 0 0 chr11 29126898 29126970 -121656583 - L1MB7 LINE L1 -16 6168 6097 22 35 0 0 chr11 29127339 29127368 -121656185 + AT_rich Low_complexity Low_complexity 1 29 0 218 292 28 14 chr11 29127920 29127992 -121655561 - L3b LINE CR1 -220 1363 1291 21 0 0 0 chr11 29128439 29128460 -121655093 + AT_rich Low_complexity Low_complexity 1 21 0 41478 59 3 0 chr11 29129078 29135217 -121648336 + L1PA5 LINE L1 1 6152 -2 391 336 116 21 chr11 29135245 29135712 -121647841 - L1M4 LINE L1 -1087 5059 4549 204 163 0 0 chr11 29135731 29135774 -121647779 + (TCCA)n Simple_repeat Simple_repeat 3 45 0 1068 206 123 8 chr11 29135774 29136017 -121647536 - AluJo SINE Alu -28 284 14 276 281 46 33 chr11 29136033 29136226 -121647327 - L1M4 LINE L1 -1594 4552 4357 2142 188 72 76 chr11 29136233 29136900 -121646653 + MER39 LTR ERV1 1 705 -2 409 336 93 53 chr11 29137252 29137447 -121646106 - L1M4 LINE L1 -2293 3853 3667 1785 154 31 0 chr11 29137447 29137733 -121645820 + AluJo SINE Alu 1 295 -17 409 336 93 53 chr11 29137733 29137826 -121645727 - L1M4 LINE L1 -2479 3667 3579 2444 69 0 0 chr11 29137826 29138130 -121645423 + AluY SINE Alu 1 304 -7 409 336 93 53 chr11 29138130 29138611 -121644942 - L1M4 LINE L1 -2567 3579 3052 318 295 57 26 chr11 29138671 29138838 -121644715 + MIR SINE MIR 37 206 -56 1558 143 68 11 chr11 29138982 29139261 -121644292 - MER2 DNA MER2_type -5 340 46 272 327 52 33 chr11 29139820 29139973 -121643580 - L3 LINE CR1 -206 1371 1216 25 0 0 0 chr11 29140057 29140082 -121643471 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr11 29140278 29140306 -121643247 + AT_rich Low_complexity Low_complexity 1 28 0 407 303 78 57 chr11 29140418 29140662 -121642891 - MIR SINE MIR -13 249 1 304 260 32 32 chr11 29140905 29141028 -121642525 + MIR SINE MIR 94 216 -46 581 330 54 12 chr11 29141237 29141570 -121641983 + L1MEc LINE L1 38 384 -6012 287 315 19 19 chr11 29141578 29141686 -121641867 - L2 LINE L2 -493 2821 2714 511 142 85 9 chr11 29142544 29142650 -121640903 - Charlie5 DNA MER1_type -173 2439 2326 446 196 18 9 chr11 29142728 29142840 -121640713 - Charlie5 DNA MER1_type -264 2348 2236 596 125 0 48 chr11 29142851 29142955 -121640598 - Charlie5 DNA MER1_type -2513 99 1 401 284 0 0 chr11 29143155 29143257 -121640296 - MIR SINE MIR -1 261 160 736 197 82 11 chr11 29143259 29143442 -121640111 - MER119 DNA MER1_type -11 572 377 1031 199 79 0 chr11 29143442 29143709 -121639844 - L1MA4 LINE L1 -14 6286 5999 1282 280 19 22 chr11 29143709 29143755 -121639798 - MER119 DNA MER1_type -190 393 348 1844 158 129 23 chr11 29143755 29144142 -121639411 + MSTA LTR MaLR 1 428 0 1282 280 19 22 chr11 29144142 29144463 -121639090 - MER119 DNA MER1_type -235 348 27 572 270 46 0 chr11 29144475 29144627 -121638926 - MIR SINE MIR -95 167 9 377 329 114 6 chr11 29144728 29144895 -121638658 + LTR33A LTR ERVL 1 185 -338 366 325 32 32 chr11 29145122 29145248 -121638305 - MER5A DNA MER1_type 0 189 64 208 174 22 0 chr11 29145267 29145313 -121638240 + (CAAA)n Simple_repeat Simple_repeat 3 49 0 611 238 66 7 chr11 29145766 29145917 -121637636 + MLT1G LTR MaLR 431 590 0 240 271 114 0 chr11 29147404 29147474 -121636079 - L2 LINE L2 -58 3214 3137 1059 243 49 82 chr11 29147697 29148195 -121635358 + L2 LINE L2 2632 3105 -208 2371 81 0 3 chr11 29148195 29148504 -121635049 - AluY SINE Alu -3 308 1 1059 243 49 82 chr11 29148504 29148705 -121634848 + L2 LINE L2 3105 3311 -2 804 299 113 53 chr11 29149706 29150140 -121633413 - L2 LINE L2 -1 3312 2853 1946 292 102 34 chr11 29150147 29150999 -121632554 - L2 LINE L2 -580 2734 1825 17113 61 0 4 chr11 29150999 29153196 -121630357 + L1M4c LINE L1 4 2188 -3960 16601 30 0 0 chr11 29153196 29155952 -121627601 + L1PA3 LINE L1 3400 6155 0 17113 61 0 4 chr11 29155952 29155965 -121627588 + L1M4c LINE L1 2188 2200 -3948 193 156 0 0 chr11 29155968 29156000 -121627553 - L2 LINE L2 -1496 1818 1787 205 305 76 8 chr11 29157364 29157482 -121626071 + MIR3 SINE MIR 81 206 -2 1105 222 16 8 chr11 29157482 29157739 -121625814 - MIR SINE MIR -1 261 3 553 299 77 21 chr11 29157785 29158019 -121625534 - MIR SINE MIR -2 260 14 517 130 50 0 chr11 29158192 29158292 -121625261 + L1MA8 LINE L1 6186 6290 -1 26 0 0 0 chr11 29158342 29158368 -121625185 + AT_rich Low_complexity Low_complexity 1 26 0 217 286 38 8 chr11 29159094 29159227 -121624326 + (TA)n Simple_repeat Simple_repeat 2 138 0 22 94 0 0 chr11 29160246 29160310 -121623243 + AT_rich Low_complexity Low_complexity 1 64 0 2777 10 0 0 chr11 29160313 29160618 -121622935 - AluYa5 SINE Alu -6 305 1 213 356 30 10 chr11 29160740 29160841 -121622712 + MIR SINE MIR 35 137 -125 1640 274 114 28 chr11 29160900 29161350 -121622203 - L2 LINE L2 -43 3270 2860 2388 101 0 0 chr11 29161350 29161656 -121621897 - AluSq SINE Alu -7 306 1 1640 274 114 28 chr11 29161656 29162065 -121621488 - L2 LINE L2 -453 2860 2332 3593 33 0 0 chr11 29162065 29162487 -121621066 - L1PA4 LINE L1 -254 5901 5480 1793 60 13 0 chr11 29162487 29162719 -121620834 + L1PA4 LINE L1 5916 6152 -3 377 270 169 67 chr11 29162719 29162897 -121620656 - L2 LINE L2 -979 2335 2140 35 0 0 0 chr11 29162958 29162993 -121620560 + AT_rich Low_complexity Low_complexity 1 35 0 284 327 20 30 chr11 29163684 29163785 -121619768 - MIR3 SINE MIR -44 164 65 189 0 0 0 chr11 29164057 29164078 -121619475 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 233 281 209 22 chr11 29165407 29165546 -121618007 + L3 LINE CR1 1077 1241 -336 281 198 13 32 chr11 29166104 29166261 -121617292 + (TA)n Simple_repeat Simple_repeat 1 154 0 956 261 32 20 chr11 29166482 29166731 -121616822 + MIR SINE MIR 11 262 0 21 0 0 0 chr11 29166891 29166912 -121616641 + AT_rich Low_complexity Low_complexity 1 21 0 777 130 9 187 chr11 29167022 29167252 -121616301 + 7SK RNA RNA 5 193 0 23 0 0 0 chr11 29167561 29167584 -121615969 + AT_rich Low_complexity Low_complexity 1 23 0 651 326 81 54 chr11 29167960 29168441 -121615112 - L2 LINE L2 -6 3307 2814 408 292 178 0 chr11 29168421 29168606 -121614947 - L2 LINE L2 -641 2673 2456 * 16104 173 41 5 chr11 29168611 29171508 -121612045 + L1MA2 LINE L1 15 3017 -4548 11818 151 33 17 chr11 29171519 29172532 -121611021 + L1MA2 LINE L1 4250 5246 -2477 2234 90 3 0 chr11 29172532 29172822 -121610731 + AluSp SINE Alu 1 291 -22 11818 151 33 17 chr11 29172822 29175220 -121608333 + L1MA2 LINE L1 5246 7722 -1 1165 309 240 10 chr11 29175231 29176152 -121607401 - L2 LINE L2 -849 2465 1333 586 237 83 56 chr11 29176214 29176480 -121607073 + L2 LINE L2 3041 3313 0 470 322 260 12 chr11 29176491 29176910 -121606643 - L2 LINE L2 -2092 1222 700 4821 113 20 0 chr11 29177998 29178708 -121604845 + L1PA15 LINE L1 5333 6056 -109 5949 39 9 18 chr11 29178829 29179598 -121603955 + L1PA7 LINE L1 5389 6150 -4 23 0 0 0 chr11 29179598 29179621 -121603932 + AT_rich Low_complexity Low_complexity 1 23 0 261 260 73 21 chr11 29179891 29179987 -121603566 + MER113 DNA MER1_type? 421 521 0 453 340 19 12 chr11 29180008 29180170 -121603383 + MIR3 SINE MIR 32 194 -14 811 168 41 31 chr11 29180502 29180698 -121602855 - L1MC3 LINE L1 0 7785 7588 3811 172 46 62 chr11 29180829 29181798 -121601755 - LTR13 LTR ERVK 0 954 1 23 0 0 0 chr11 29182235 29182258 -121601295 + AT_rich Low_complexity Low_complexity 1 23 0 238 267 33 0 chr11 29182440 29182500 -121601053 + MIR SINE MIR 88 149 -113 21 57 0 0 chr11 29182988 29183023 -121600530 + AT_rich Low_complexity Low_complexity 1 35 0 237 65 0 0 chr11 29183352 29183383 -121600170 + (CATA)n Simple_repeat Simple_repeat 2 32 0 13764 139 32 20 chr11 29183384 29185772 -121597781 - Tigger1 DNA MER2_type 0 2418 1 309 245 123 0 chr11 29186301 29186407 -121597146 - MER103 DNA DNA -12 154 36 27 0 0 0 chr11 29188067 29188094 -121595459 + AT_rich Low_complexity Low_complexity 1 27 0 21 36 0 0 chr11 29189078 29189106 -121594447 + AT_rich Low_complexity Low_complexity 1 28 0 2127 119 3 7 chr11 29189128 29189431 -121594122 - AluSx SINE Alu -10 302 1 372 317 8 0 chr11 29189482 29189602 -121593951 + L1MEd LINE L1 45 165 -5954 649 257 52 24 chr11 29189739 29189949 -121593604 - MER97b DNA MER1_type? -836 217 2 503 313 110 67 chr11 29189971 29190600 -121592953 + L1MEd LINE L1 300 955 -5164 595 267 100 9 chr11 29190602 29190812 -121592741 - MIR SINE MIR -15 247 19 394 246 113 50 chr11 29190830 29191070 -121592483 + L1MEd LINE L1 1003 1257 -4862 227 129 14 71 chr11 29191865 29191935 -121591618 + T-rich Low_complexity Low_complexity 2 67 0 362 202 8 17 chr11 29191945 29192037 -121591516 - AluY SINE Alu -116 185 130 836 244 51 28 chr11 29192375 29192629 -121590924 - MIR SINE MIR 0 262 3 237 214 36 0 chr11 29192922 29192978 -121590575 - MER117 DNA MER1_type -134 63 6 245 273 61 50 chr11 29194239 29194338 -121589215 - MIR SINE MIR -98 164 65 660 158 41 47 chr11 29194376 29194547 -121589006 - Charlie1b DNA MER1_type 0 523 354 217 182 23 34 chr11 29194568 29194615 -121588938 + (TAA)n Simple_repeat Simple_repeat 2 88 0 34 24 0 0 chr11 29194615 29194656 -121588897 + AT_rich Low_complexity Low_complexity 1 41 0 1074 196 53 78 chr11 29194668 29194989 -121588564 - Charlie1b DNA MER1_type -210 313 1 1306 171 3 89 chr11 29194999 29195326 -121588227 - AluJo SINE Alu -13 299 1 4190 62 2 7 chr11 29197638 29198184 -121585369 - L1PA8 LINE L1 -3 6169 5627 192 300 100 12 chr11 29198988 29199068 -121584485 + MIR SINE MIR 53 139 -123 468 0 0 0 chr11 29199252 29199304 -121584249 + (TATAA)n Simple_repeat Simple_repeat 5 56 0 435 141 47 0 chr11 29200097 29200182 -121583371 - L1MB3 LINE L1 -1 6182 6094 347 281 98 61 chr11 29200755 29200919 -121582634 - MIR3 SINE MIR -21 187 18 438 366 144 9 chr11 29200934 29201281 -121582272 + L2 LINE L2 2521 2914 -400 1018 75 0 0 chr11 29201478 29201612 -121581941 - L1PA6 LINE L1 -6 6148 6015 247 362 21 0 chr11 29201699 29201793 -121581760 - MIR3 SINE MIR -28 180 85 38 61 0 0 chr11 29202169 29202235 -121581318 + AT_rich Low_complexity Low_complexity 1 66 0 284 315 22 0 chr11 29202776 29202868 -121580685 - MIR3 SINE MIR -6 202 109 442 278 161 39 chr11 29203014 29203269 -121580284 - L2 LINE L2 -15 3298 3013 229 347 142 16 chr11 29204726 29204916 -121578637 + MIR SINE MIR 3 216 -46 2752 207 16 14 chr11 29204953 29205514 -121578039 - MER68 LTR ERV1 0 562 1 1707 174 10 3 chr11 29206355 29206654 -121576899 + AluJo SINE Alu 1 301 -11 270 248 97 69 chr11 29206659 29206804 -121576749 - MIR SINE MIR -66 196 48 1510 180 9 41 chr11 29207394 29207711 -121575842 - AluJo SINE Alu 0 312 6 187 225 0 25 chr11 29207754 29207794 -121575759 + L2 LINE L2 3184 3222 -91 229 240 17 6 chr11 29208227 29208321 -121575232 - L1MC/D LINE L1 -331 5790 5744 251 275 62 0 chr11 29208368 29208448 -121575105 - L1MC/D LINE L1 -474 5647 5563 2255 79 0 0 chr11 29208539 29208853 -121574700 - AluY SINE Alu 0 314 1 941 117 0 10 chr11 29209421 29209656 -121573897 + (C)n Simple_repeat Simple_repeat 1 414 0 223 227 133 27 chr11 29210349 29210424 -121573129 + L3 LINE CR1 1490 1572 -5 299 229 193 0 chr11 29210655 29210764 -121572789 + MIR3 SINE MIR 65 194 -14 246 337 81 45 chr11 29211066 29211102 -121572451 + L2 LINE L2 2655 2688 -626 180 0 0 0 chr11 29211102 29211122 -121572431 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 246 337 81 45 chr11 29211122 29211394 -121572159 + L2 LINE L2 2688 2974 -340 737 282 61 38 chr11 29211902 29212164 -121571389 + MLT1J LTR MaLR 1 268 -243 434 282 40 36 chr11 29212232 29212493 -121571060 + L2 LINE L2 2378 2956 -357 258 337 60 18 chr11 29212612 29212778 -121570775 - L2 LINE L2 -151 3162 2990 960 300 43 10 chr11 29212832 29213135 -121570418 - MLT1I LTR MaLR -51 358 46 316 250 39 16 chr11 29213435 29213563 -121569990 - L1ME LINE L1 -346 5775 5645 396 328 128 15 chr11 29213916 29214120 -121569433 + MIR SINE MIR 20 246 -16 195 100 0 0 chr11 29214751 29214781 -121568772 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 499 165 0 21 chr11 29214781 29214878 -121568675 + L1MB7 LINE L1 6071 6165 -19 211 328 0 0 chr11 29215414 29215475 -121568078 + L2 LINE L2 3211 3271 -1 23 33 0 0 chr11 29215996 29216026 -121567527 + AT_rich Low_complexity Low_complexity 1 30 0 292 354 77 19 chr11 29216658 29216969 -121566584 - MARNA DNA Mariner -169 417 89 2188 121 0 6 chr11 29218991 29219304 -121564249 - AluSq SINE Alu 0 313 3 343 226 68 23 chr11 29219353 29219366 -121564187 - HAL1 LINE L1 -145 2362 2351 7748 13 23 0 chr11 29219366 29220292 -121563261 - L1PA3 LINE L1 0 6155 5228 343 226 68 23 chr11 29220292 29220411 -121563142 - HAL1 LINE L1 -156 2351 2224 37 23 0 0 chr11 29220557 29220601 -121562952 + AT_rich Low_complexity Low_complexity 1 44 0 25 0 0 0 chr11 29221082 29221107 -121562446 + AT_rich Low_complexity Low_complexity 1 25 0 635 266 180 46 chr11 29221745 29222095 -121561458 - HAL1 LINE L1 -1847 660 264 28 79 0 0 chr11 29222188 29222251 -121561302 + AT_rich Low_complexity Low_complexity 1 63 0 276 53 0 0 chr11 29222357 29222395 -121561158 + (TTTTTG)n Simple_repeat Simple_repeat 3 40 0 205 329 0 26 chr11 29222564 29222640 -121560913 + MIR SINE MIR 2 75 -187 866 313 133 17 chr11 29224300 29224988 -121558565 + L2 LINE L2 2551 3313 0 25 65 0 0 chr11 29225895 29225941 -121557612 + AT_rich Low_complexity Low_complexity 1 46 0 441 288 5 7 chr11 29226935 29227074 -121556479 - MIR SINE MIR -77 131 10 196 240 0 20 chr11 29227955 29228005 -121555548 - L2 LINE L2 -566 2748 2700 1232 190 132 29 chr11 29228473 29228784 -121554769 + MER2 DNA MER2_type 1 343 -1 336 193 12 0 chr11 29228906 29228989 -121554564 + L1PA16 LINE L1 6079 6162 -4 285 350 29 0 chr11 29231104 29231244 -121552309 + L1ME LINE L1 486 629 -5925 473 255 71 54 chr11 29231739 29232068 -121551485 + L1ME LINE L1 923 1457 -4968 10099 140 28 10 chr11 29232076 29234386 -121549167 - L1MA3 LINE L1 -1 6304 3939 22349 41 0 0 chr11 29234386 29237916 -121545637 - L1PA5 LINE L1 -4 6150 2619 10099 140 28 10 chr11 29237916 29238416 -121545137 - L1MA3 LINE L1 -2366 3939 3449 360 289 59 20 chr11 29238444 29238745 -121544808 + L1ME LINE L1 1341 1806 -4911 213 139 23 0 chr11 29239449 29239492 -121544061 + (TTTG)n Simple_repeat Simple_repeat 4 47 0 1783 141 46 12 chr11 29240309 29240635 -121542918 + MER44D DNA MER2_type 2 608 -1 214 248 106 75 chr11 29240875 29241036 -121542517 + L2 LINE L2 3127 3292 -21 180 0 0 0 chr11 29241275 29241295 -121542258 + (T)n Simple_repeat Simple_repeat 1 20 0 362 201 77 66 chr11 29241859 29241991 -121541562 - MIR SINE MIR -62 146 37 24 32 0 0 chr11 29243844 29243875 -121539678 + AT_rich Low_complexity Low_complexity 1 31 0 2971 132 72 13 chr11 29244139 29244610 -121538943 - MER1A DNA MER1_type 0 529 31 237 214 89 0 chr11 29244962 29245018 -121538535 + MIR3 SINE MIR 143 203 -5 637 286 21 11 chr11 29245467 29245656 -121537897 - L1ME3A LINE L1 -36 6134 5944 901 79 58 0 chr11 29245684 29245823 -121537730 - L1MA5 LINE L1 -3 6297 6151 25 51 0 0 chr11 29245831 29245870 -121537683 + AT_rich Low_complexity Low_complexity 1 39 0 703 12 0 0 chr11 29245966 29246046 -121537507 + MADE1 DNA Mariner 1 80 0 314 147 64 0 chr11 29246085 29246242 -121537311 + (TA)n Simple_repeat Simple_repeat 2 168 0 301 234 0 16 chr11 29247113 29247237 -121536316 + (TA)n Simple_repeat Simple_repeat 1 122 0 263 237 0 26 chr11 29247262 29247338 -121536215 + (TA)n Simple_repeat Simple_repeat 1 74 0 208 260 156 10 chr11 29247594 29247690 -121535863 - MIR SINE MIR 0 262 153 803 241 34 34 chr11 29247833 29248069 -121535484 + MER46C DNA MER2_type 86 321 -17 249 261 14 43 chr11 29248123 29248192 -121535361 - MIR SINE MIR -149 113 47 2274 115 0 6 chr11 29248430 29248743 -121534810 + AluSx SINE Alu 1 311 -1 1603 135 52 8 chr11 29249277 29249544 -121534009 - Tigger5 DNA MER2_type 0 2323 2045 385 98 0 0 chr11 29249533 29249584 -121533969 + Tigger5 DNA MER2_type 143 193 -2130 * 403 189 0 14 chr11 29249588 29249662 -121533891 + Tigger5 DNA MER2_type 2251 2323 0 21 0 0 0 chr11 29249708 29249729 -121533824 + AT_rich Low_complexity Low_complexity 1 21 0 663 236 27 67 chr11 29251107 29251332 -121532221 + MLT1K LTR MaLR 322 537 -51 2315 199 178 7 chr11 29251344 29251912 -121531641 - L1MD2 LINE L1 -20 6339 5675 1953 176 9 0 chr11 29252639 29252985 -121530568 - L1PB4 LINE L1 0 6156 5808 258 146 34 45 chr11 29253060 29253149 -121530404 + (TA)n Simple_repeat Simple_repeat 2 89 0 232 327 18 55 chr11 29255731 29255841 -121527712 + L2 LINE L2 3149 3254 -18 1171 211 61 64 chr11 29256696 29257057 -121526496 - MER21B LTR ERV1 -19 844 485 2038 189 32 11 chr11 29257061 29257495 -121526058 - MER65A LTR ERV1 -2 443 1 2039 235 11 6 chr11 29257495 29257963 -121525590 - MER65A-int LTR ERV1 0 4871 4402 1758 269 66 0 chr11 29257967 29258394 -121525159 - MER65A-int LTR ERV1 -813 4058 3604 256 180 82 45 chr11 29258407 29258553 -121525000 - MER65A-int LTR ERV1 -939 5392 5192 180 186 0 0 chr11 29258701 29258760 -121524793 + C-rich Low_complexity Low_complexity 1 59 0 248 229 0 21 chr11 29258815 29258911 -121524642 + (CCA)n Simple_repeat Simple_repeat 3 96 0 * 276 201 13 65 chr11 29258850 29259004 -121524549 + (CACCC)n Simple_repeat Simple_repeat 3 148 0 1335 195 87 67 chr11 29259260 29261082 -121522471 - MER65A-int LTR ERV1 -353 4527 1546 25 51 0 0 chr11 29261104 29261143 -121522410 + AT_rich Low_complexity Low_complexity 1 39 0 2920 180 61 33 chr11 29261196 29262014 -121521539 - MER65A-int LTR ERV1 -2377 2494 1654 2054 109 85 21 chr11 29262025 29262356 -121521197 - THE1B LTR MaLR -12 352 1 11100 99 19 1 chr11 29262356 29263908 -121519645 - THE1B-int LTR MaLR 0 1580 1 2292 105 33 30 chr11 29263908 29264271 -121519282 - THE1B LTR MaLR 0 364 1 4092 202 61 47 chr11 29264271 29265407 -121518146 - MER65A-int LTR ERV1 -3237 1634 483 619 244 19 91 chr11 29265417 29265737 -121517816 - MER65A-int LTR ERV1 -4493 378 82 2469 154 7 29 chr11 29265821 29266275 -121517278 - MER65A LTR ERV1 -1 444 1 1094 282 25 64 chr11 29266321 29266757 -121516796 - MER21B LTR ERV1 -444 419 1 505 373 65 27 chr11 29266783 29267046 -121516507 - L3 LINE CR1 -11 1566 1294 1970 172 74 54 chr11 29267113 29267613 -121515940 + LTR54 LTR ERV1 1 510 0 266 265 88 20 chr11 29267676 29267778 -121515775 - MLT1L LTR MaLR 0 615 507 233 293 40 71 chr11 29267945 29268044 -121515509 + L2 LINE L2 3177 3272 0 22 70 0 0 chr11 29268273 29268316 -121515237 + AT_rich Low_complexity Low_complexity 1 43 0 274 252 233 39 chr11 29268412 29268515 -121515038 + MER5A DNA MER1_type 46 168 -21 1053 235 9 0 chr11 29268703 29268920 -121514633 - MER20 DNA MER1_type 0 219 1 14955 132 20 7 chr11 29269052 29271439 -121512114 - Tigger1 DNA MER2_type 0 2418 1 323 275 42 42 chr11 29271577 29271719 -121511834 - HAL1 LINE L1 -886 1621 1480 329 296 82 58 chr11 29272504 29272795 -121510758 - L1MEc LINE L1 -4189 2398 2101 1652 139 44 25 chr11 29273000 29273317 -121510236 - AluJb SINE Alu 0 328 7 302 293 178 44 chr11 29273328 29273553 -121510000 - HAL1 LINE L1 -887 1620 1366 248 284 95 0 chr11 29273558 29273653 -121509900 - L1MEc LINE L1 -4869 1435 1332 232 272 31 80 chr11 29273653 29273815 -121509738 - HsTC2 DNA Tc2 0 1898 1745 1294 214 59 70 chr11 29273864 29274322 -121509231 - MLT2C2 LTR ERVL -11 453 1 1100 214 24 20 chr11 29274331 29274681 -121508872 - HsTC2 DNA Tc2 -205 1693 1284 287 304 51 22 chr11 29274696 29274834 -121508719 - HsTC2 DNA Tc2 -1751 147 6 300 271 42 31 chr11 29274929 29275025 -121508528 - L1MEc LINE L1 -5147 1262 1166 1850 177 34 72 chr11 29275254 29275657 -121507896 - L1MA4 LINE L1 0 6300 5790 369 0 0 0 chr11 29275657 29275698 -121507855 + (TG)n Simple_repeat Simple_repeat 2 42 0 1850 177 34 72 chr11 29275698 29275768 -121507785 - L1MA4 LINE L1 -510 5790 5719 210 320 20 72 chr11 29275773 29275926 -121507627 + MIR SINE MIR 117 261 -1 315 0 0 0 chr11 29276651 29276686 -121506867 + (A)n Simple_repeat Simple_repeat 1 35 0 238 293 32 73 chr11 29277566 29277689 -121505864 - L2 LINE L2 0 3272 3155 690 268 18 6 chr11 29277862 29278030 -121505523 - MIR SINE MIR -25 237 68 622 276 89 56 chr11 29278039 29278434 -121505119 - MLT1K LTR MaLR -4 584 177 236 308 33 33 chr11 29278436 29278556 -121504997 + MIR SINE MIR 143 262 0 2199 154 3 0 chr11 29278574 29278919 -121504634 + MER7A DNA MER2_type 2 345 -1 730 309 132 6 chr11 29278948 29279281 -121504272 - L2 LINE L2 0 3313 2939 187 322 56 56 chr11 29280830 29280973 -121502580 + L2 LINE L2 3171 3313 0 396 377 36 0 chr11 29281474 29281641 -121501912 + MIR SINE MIR 20 192 -70 192 226 0 38 chr11 29282947 29283000 -121500553 - MIR SINE MIR -71 191 141 377 319 9 0 chr11 29283329 29283442 -121500111 + MIR3 SINE MIR 65 178 -30 247 276 0 5 chr11 29283766 29283841 -121499712 - MIR SINE MIR -81 127 54 476 276 92 6 chr11 29284079 29284242 -121499311 + Charlie8 DNA MER1_type 58 234 -2183 392 329 64 14 chr11 29284242 29284382 -121499171 - MER91A DNA MER1_type -14 182 36 296 229 14 0 chr11 29284571 29284641 -121498912 + Charlie8 DNA MER1_type 2347 2417 0 2131 194 22 29 chr11 29285122 29285300 -121498253 + MLT1C LTR MaLR 1 179 -288 2057 114 4 4 chr11 29285300 29285601 -121497952 + AluSx SINE Alu 1 301 0 2131 194 22 29 chr11 29285601 29285874 -121497679 + MLT1C LTR MaLR 179 450 -17 207 269 0 0 chr11 29286060 29286190 -121497363 + G-rich Low_complexity Low_complexity 1 130 0 196 296 0 0 chr11 29286821 29286865 -121496688 + MIR SINE MIR 89 132 -76 305 309 0 0 chr11 29287228 29287312 -121496241 + CT-rich Low_complexity Low_complexity 2 85 0 242 318 126 45 chr11 29288224 29288447 -121495106 - MIR SINE MIR -6 256 16 180 234 0 0 chr11 29288476 29288523 -121495030 + (CA)n Simple_repeat Simple_repeat 2 48 0 233 146 0 0 chr11 29288804 29288845 -121494708 + L1MD3 LINE L1 7240 7280 -715 572 224 16 0 chr11 29288846 29288971 -121494582 + MLT1F1 LTR MaLR 5 131 -436 1446 212 88 15 chr11 29288986 29289382 -121494171 + L1MD3 LINE L1 7435 7859 -136 550 160 76 8 chr11 29289506 29289637 -121493916 + L1MD3 LINE L1 7848 7987 -8 186 43 0 0 chr11 29289641 29289664 -121493889 + (T)n Simple_repeat Simple_repeat 1 23 0 201 365 65 0 chr11 29289691 29289798 -121493755 - L2 LINE L2 -286 2986 2873 1341 197 51 70 chr11 29290648 29291018 -121492535 - MLT1A1 LTR MaLR -2 363 1 930 255 129 54 chr11 29291205 29291223 -121492330 - L2 LINE L2 -1 3312 3297 2314 116 0 0 chr11 29291223 29291533 -121492020 + AluSq SINE Alu 1 310 -3 930 255 129 54 chr11 29291533 29292107 -121491446 - L2 LINE L2 -16 3297 2630 1003 154 6 0 chr11 29292820 29292982 -121490571 + Tigger5 DNA MER2_type 2161 2323 0 2340 170 43 30 chr11 29292995 29293386 -121490167 - L1MB7 LINE L1 -107 6077 5676 2197 123 0 0 chr11 29293386 29293686 -121489867 - AluSx SINE Alu -12 300 1 2340 170 43 30 chr11 29293686 29293800 -121489753 - L1MB7 LINE L1 -508 5676 5565 2348 142 32 48 chr11 29294031 29294182 -121489371 - Tigger2a DNA MER2_type -2274 434 282 2379 94 3 0 chr11 29294182 29294489 -121489064 - AluSp SINE Alu -1 312 5 2348 142 32 48 chr11 29294489 29294775 -121488778 - Tigger2a DNA MER2_type -2426 282 4 205 292 0 0 chr11 29294777 29294825 -121488728 + (TATATG)n Simple_repeat Simple_repeat 2 49 0 429 156 0 0 chr11 29294825 29294902 -121488651 + (CA)n Simple_repeat Simple_repeat 2 78 0 347 171 0 14 chr11 29294903 29294973 -121488580 + MLT2D LTR ERVL 298 366 -48 314 206 0 32 chr11 29295379 29295442 -121488111 + MIR SINE MIR 2 62 -200 697 236 0 35 chr11 29295699 29295873 -121487680 - FRAM SINE Alu -11 165 1 253 282 0 0 chr11 29296131 29296216 -121487337 + L1MC4 LINE L1 6619 6703 -1339 180 0 0 0 chr11 29296216 29296236 -121487317 + (TA)n Simple_repeat Simple_repeat 2 21 0 818 118 0 0 chr11 29296930 29297049 -121486504 - AluY SINE Alu -4 307 189 626 260 42 16 chr11 29297674 29297881 -121485672 + MIR SINE MIR 51 262 0 461 308 186 22 chr11 29297988 29298306 -121485247 + L2 LINE L2 2944 3313 0 1078 69 0 0 chr11 29298997 29299127 -121484426 - AluY SINE Alu -181 130 1 357 103 8 239 chr11 29299342 29299459 -121484094 + MER63 DNA MER1_type 1 716 -120 1456 150 28 0 chr11 29299758 29300012 -121483541 - L1MA3 LINE L1 0 6305 6045 339 279 98 0 chr11 29300060 29300182 -121483371 + L2 LINE L2 3168 3301 -12 399 41 0 0 chr11 29301199 29301248 -121482305 + (TG)n Simple_repeat Simple_repeat 2 50 0 237 180 0 0 chr11 29301430 29301480 -121482073 + (TA)n Simple_repeat Simple_repeat 1 50 0 595 259 48 120 chr11 29304998 29305372 -121478181 + L2 LINE L2 2958 3304 -9 548 357 43 62 chr11 29305535 29306003 -121477550 - L2 LINE L2 -2 3270 2812 229 323 0 15 chr11 29306025 29306090 -121477463 + L3b LINE CR1 1496 1559 -24 569 183 100 8 chr11 29306206 29306326 -121477227 - MLT1A1 LTR MaLR -11 354 224 24 32 0 0 chr11 29306626 29306657 -121476896 + AT_rich Low_complexity Low_complexity 1 31 0 22 35 0 0 chr11 29307209 29307238 -121476315 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr11 29307855 29307879 -121475674 + AT_rich Low_complexity Low_complexity 1 24 0 2030 146 0 0 chr11 29308283 29308585 -121474968 - AluSx SINE Alu -10 302 1 1603 191 3 7 chr11 29308903 29309202 -121474351 + AluJb SINE Alu 1 298 -14 284 250 0 71 chr11 29309538 29309622 -121473931 + MER20B DNA MER1_type 467 544 -239 * 890 265 111 29 chr11 29309605 29309948 -121473605 - MER20B DNA MER1_type -328 455 85 180 0 0 0 chr11 29310377 29310397 -121473156 + (T)n Simple_repeat Simple_repeat 1 20 0 24 0 0 0 chr11 29311245 29311269 -121472284 + AT_rich Low_complexity Low_complexity 1 24 0 1839 254 105 10 chr11 29312311 29312806 -121470747 + MLT1F LTR MaLR 1 542 0 1619 159 68 17 chr11 29312987 29313408 -121470145 - MER61D LTR ERV1 0 501 1 12768 168 28 41 chr11 29313411 29315058 -121468495 - HUERS-P3b LTR ERV1 -2 6994 5326 2282 109 37 3 chr11 29315058 29315408 -121468145 + THE1B LTR MaLR 3 364 0 12768 168 28 41 chr11 29315408 29318532 -121465021 - HUERS-P3b LTR ERV1 -1670 5326 615 1260 179 51 72 chr11 29318535 29318845 -121464708 - HUERS-P2 LTR ERV1 -4783 434 289 881 243 52 29 chr11 29318862 29319206 -121464347 - HUERS-P2 LTR ERV1 -2530 601 268 1049 169 143 19 chr11 29319342 29319642 -121463911 - MER61D LTR ERV1 -116 385 1 838 206 75 110 chr11 29319650 29320077 -121463476 - LTR8A LTR ERV1 -7 720 309 1364 167 4 25 chr11 29320108 29320392 -121463161 + AluJb SINE Alu 49 327 0 890 210 66 121 chr11 29320422 29320727 -121462826 - LTR8 LTR ERV1 -434 257 1 591 296 52 83 chr11 29320752 29320766 -121462787 - L2 LINE L2 -407 2907 2894 2202 169 47 45 chr11 29320766 29321274 -121462279 - LTR54 LTR ERV1 0 510 2 591 296 52 83 chr11 29321274 29321719 -121461834 - L2 LINE L2 -420 2894 2462 246 239 195 9 chr11 29321776 29321889 -121461664 - L2 LINE L2 -945 2369 2236 181 283 0 0 chr11 29322389 29322435 -121461118 - L2 LINE L2 -1081 2233 2188 296 370 75 72 chr11 29322530 29322822 -121460731 + L2 LINE L2 2976 3268 -4 32 0 0 0 chr11 29324017 29324049 -121459504 + AT_rich Low_complexity Low_complexity 1 32 0 33 0 0 0 chr11 29324328 29324361 -121459192 + AT_rich Low_complexity Low_complexity 1 33 0 216 266 38 13 chr11 29325591 29325670 -121457883 + L3b LINE CR1 1251 1331 -252 203 360 35 0 chr11 29325772 29325858 -121457695 - MIR SINE MIR -23 239 151 577 226 32 8 chr11 29326092 29326216 -121457337 + MER104 DNA Tc2 51 177 -3 468 240 96 0 chr11 29326346 29326492 -121457061 - MER103 DNA DNA 0 166 7 203 254 70 28 chr11 29327884 29327955 -121455598 + MIR SINE MIR 157 230 -32 224 300 57 23 chr11 29329298 29329392 -121454161 - MIR SINE MIR -65 143 62 661 202 9 0 chr11 29329779 29329888 -121453665 + MER2 DNA MER2_type 1 110 -235 3531 110 112 0 chr11 29329888 29330459 -121453094 - MER41B LTR ERV1 0 635 1 547 222 116 44 chr11 29330459 29330681 -121452872 + MER2 DNA MER2_type 107 344 -1 665 257 6 40 chr11 29331348 29331523 -121452030 + MIR SINE MIR 7 175 -87 318 293 81 8 chr11 29331547 29331670 -121451883 + MIR3 SINE MIR 54 185 -23 392 365 28 6 chr11 29331788 29331966 -121451587 + MIR SINE MIR 66 247 -15 371 245 147 31 chr11 29332872 29333035 -121450518 + MIR SINE MIR 81 262 0 526 32 0 0 chr11 29334244 29334307 -121449246 + MLT2A1 LTR ERVL 1 63 -381 21510 70 4 4 chr11 29334308 29337069 -121446484 + HERVL-A1 LTR ERVL 2893 5654 0 2345 134 36 41 chr11 29337074 29337515 -121446038 + MLT2A1 LTR ERVL 6 444 0 307 169 14 28 chr11 29338067 29338138 -121445415 - MER20B DNA MER1_type 0 783 714 239 272 25 12 chr11 29338352 29338433 -121445120 - L2 LINE L2 -86 3227 3146 39 68 0 0 chr11 29338618 29338692 -121444861 + AT_rich Low_complexity Low_complexity 1 74 0 739 266 116 10 chr11 29338879 29339086 -121444467 + MIR SINE MIR 13 241 -21 450 315 50 35 chr11 29339204 29339404 -121444149 + MIR SINE MIR 60 262 0 197 200 0 22 chr11 29340201 29340246 -121443307 + MIR3 SINE MIR 111 154 -54 328 281 49 20 chr11 29340923 29341070 -121442483 - L1ME LINE L1 -456 5665 5506 363 270 36 7 chr11 29341816 29341953 -121441600 - L1ME2 LINE L1 0 6164 6024 1560 261 87 10 chr11 29341994 29342512 -121441041 - L1ME2 LINE L1 -215 5947 5390 24 0 0 0 chr11 29343740 29343764 -121439789 + AT_rich Low_complexity Low_complexity 1 24 0 16706 86 2 1 chr11 29343764 29347097 -121436456 - L1PA7 LINE L1 -2 6152 2819 21 36 0 0 chr11 29347798 29347826 -121435727 + AT_rich Low_complexity Low_complexity 1 28 0 228 267 128 12 chr11 29347830 29347916 -121435637 + MIR SINE MIR 41 136 -126 366 335 25 19 chr11 29348249 29348410 -121435143 - L2 LINE L2 0 3313 3152 24 32 0 0 chr11 29348420 29348451 -121435102 + AT_rich Low_complexity Low_complexity 1 31 0 269 213 75 32 chr11 29348483 29348577 -121434976 - L2 LINE L2 -949 2365 2268 402 284 209 9 chr11 29348624 29348835 -121434718 - L2 LINE L2 -1296 2018 1766 23 68 0 0 chr11 29349191 29349235 -121434318 + AT_rich Low_complexity Low_complexity 1 44 0 31 44 0 0 chr11 29349633 29349678 -121433875 + AT_rich Low_complexity Low_complexity 1 45 0 225 265 143 10 chr11 29349929 29350027 -121433526 + MIR SINE MIR 145 255 -7 34 65 0 0 chr11 29350353 29350415 -121433138 + AT_rich Low_complexity Low_complexity 1 62 0 21 0 0 0 chr11 29351029 29351050 -121432503 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr11 29352781 29352803 -121430750 + AT_rich Low_complexity Low_complexity 1 22 0 28 61 0 0 chr11 29353683 29353732 -121429821 + AT_rich Low_complexity Low_complexity 1 49 0 274 146 0 0 chr11 29353744 29353792 -121429761 - L1M4 LINE L1 -2449 3697 3650 26 0 0 0 chr11 29354412 29354438 -121429115 + AT_rich Low_complexity Low_complexity 1 26 0 1270 242 28 25 chr11 29354835 29355231 -121428322 - L1M4 LINE L1 -2296 3850 3454 610 220 8 8 chr11 29355231 29355349 -121428204 + MER20 DNA MER1_type 100 217 -2 391 288 23 11 chr11 29355349 29355526 -121428027 - L1M4 LINE L1 -2690 3456 3278 2426 123 80 5 chr11 29355710 29356108 -121427445 - MSTA LTR MaLR 0 428 1 569 110 11 0 chr11 29356627 29356718 -121426835 + (TTTC)n Simple_repeat Simple_repeat 3 94 0 2037 125 0 4 chr11 29356723 29357004 -121426549 - AluSq SINE Alu -33 280 1 29 28 0 0 chr11 29357140 29357176 -121426377 + AT_rich Low_complexity Low_complexity 1 36 0 5425 177 19 15 chr11 29357207 29359169 -121424384 - L1PB3 LINE L1 -5 6149 4184 25 20 0 59 chr11 29359877 29359928 -121423625 + AT_rich Low_complexity Low_complexity 1 48 0 379 121 17 0 chr11 29360014 29360072 -121423481 - MIR SINE MIR -113 149 91 21 0 0 0 chr11 29360342 29360363 -121423190 + AT_rich Low_complexity Low_complexity 1 21 0 357 257 37 59 chr11 29362173 29362250 -121421303 + MIR SINE MIR 117 191 -71 2087 72 0 4 chr11 29362250 29362513 -121421040 - AluSq SINE Alu -16 297 36 357 257 37 59 chr11 29362513 29362571 -121420982 + MIR SINE MIR 191 249 -13 459 261 57 40 chr11 29362674 29362850 -121420703 + MIR SINE MIR 8 186 -76 209 261 62 0 chr11 29362895 29362960 -121420593 + MIR SINE MIR 183 251 -11 6999 102 38 12 chr11 29363143 29364224 -121419329 - L1P LINE L1 -1722 4424 3316 272 333 12 12 chr11 29364225 29364309 -121419244 + L2 LINE L2 3203 3286 -27 347 325 138 42 chr11 29364446 29364831 -121418722 - L2 LINE L2 -458 2856 2435 203 338 0 14 chr11 29365646 29365720 -121417833 + MIR3 SINE MIR 135 207 -1 347 252 179 0 chr11 29366082 29366205 -121417348 + MIR3 SINE MIR 46 190 -18 235 270 11 34 chr11 29366507 29366596 -121416957 + MARNA DNA Mariner 30 116 -470 275 333 18 35 chr11 29366826 29366940 -121416613 + MIR SINE MIR 18 129 -79 225 0 0 0 chr11 29366941 29366966 -121416587 + (T)n Simple_repeat Simple_repeat 1 25 0 204 359 0 39 chr11 29367110 29367188 -121416365 + MIR SINE MIR 20 94 -168 326 294 35 63 chr11 29367251 29367394 -121416159 - MIR SINE MIR -76 186 48 27 0 0 0 chr11 29367586 29367613 -121415940 + AT_rich Low_complexity Low_complexity 1 27 0 1617 36 5 0 chr11 29367613 29367808 -121415745 - L1PA3 LINE L1 -2 6153 5958 3602 123 30 14 chr11 29418978 29419569 -121363984 + LTR36 LTR ERV1 11 611 0 286 244 35 78 chr11 29419570 29419685 -121363868 + MIR SINE MIR 153 262 0 195 100 0 0 chr11 29419699 29419729 -121363824 + (TG)n Simple_repeat Simple_repeat 2 31 0 1124 157 113 8 chr11 29419760 29419928 -121363625 - MLT1A1 LTR MaLR -15 350 146 425 19 19 0 chr11 29419928 29419982 -121363571 + (GA)n Simple_repeat Simple_repeat 2 56 0 1124 157 113 8 chr11 29419982 29420061 -121363492 - MLT1A1 LTR MaLR -219 146 77 22 0 0 0 chr11 29420448 29420470 -121363083 + AT_rich Low_complexity Low_complexity 1 22 0 252 0 0 0 chr11 29421008 29421036 -121362517 + (TG)n Simple_repeat Simple_repeat 1 28 0 1444 214 7 14 chr11 29421036 29421317 -121362236 - AluJb SINE Alu -33 279 1 4120 32 8 0 chr11 29422016 29422513 -121361040 - L1PA3 LINE L1 0 6155 5655 290 239 30 0 chr11 29422615 29422650 -121360903 + MIR3 SINE MIR 127 159 -49 1041 219 5 22 chr11 29422650 29422874 -121360679 - MER58A DNA MER1_type -2 222 3 290 239 30 0 chr11 29422874 29422905 -121360648 + MIR3 SINE MIR 159 195 -13 449 204 48 0 chr11 29423641 29423744 -121359809 - MER20 DNA MER1_type 0 219 112 3693 24 2 17 chr11 29423884 29424299 -121359254 + SVA Other Other 978 1386 0 2383 145 29 19 chr11 29425668 29426088 -121357465 + MSTB LTR MaLR 1 424 -2 1144 175 83 74 chr11 29426097 29426536 -121357017 + MST-int LTR MaLR 15 463 -908 255 152 0 0 chr11 29427350 29427396 -121356157 + (TG)n Simple_repeat Simple_repeat 1 46 0 695 164 59 0 chr11 29427452 29427604 -121355949 - L1MB2 LINE L1 -15 6156 5996 182 336 92 23 chr11 29427615 29427746 -121355807 - MIR SINE MIR -60 202 63 2593 52 3 0 chr11 29428856 29429166 -121354387 + AluY SINE Alu 1 311 0 4183 67 2 6 chr11 29429459 29429999 -121353554 + L1PA7 LINE L1 5604 6141 -13 735 302 88 0 chr11 29430028 29430313 -121353240 + L2 LINE L2 3004 3313 0 21 0 0 0 chr11 29430937 29430958 -121352595 + AT_rich Low_complexity Low_complexity 1 21 0 1720 107 0 4 chr11 29431398 29431623 -121351930 - AluY SINE Alu -49 262 39 4400 215 33 64 chr11 29431623 29432177 -121351376 - L1M2 LINE L1 -3957 2372 1802 1430 200 25 51 chr11 29432177 29432492 -121351061 - AluJo SINE Alu -5 307 1 4400 215 33 64 chr11 29432492 29433705 -121349848 - L1M2 LINE L1 -4527 1802 351 2214 203 20 34 chr11 29433824 29434237 -121349316 - L1 LINE L1 -2970 3176 2773 2515 62 0 0 chr11 29434237 29434542 -121349011 - AluY SINE Alu -6 305 1 2214 203 20 34 chr11 29434542 29434739 -121348814 - L1 LINE L1 -3373 2773 2575 206 156 0 22 chr11 29436686 29436731 -121346822 + L2 LINE L2 3270 3313 0 988 139 30 0 chr11 29436907 29437073 -121346480 + L1PA13 LINE L1 5989 6159 -4 5199 125 8 1 chr11 29437083 29437925 -121345628 + L1PA15 LINE L1 5318 6165 0 506 173 9 27 chr11 29437925 29438035 -121345518 + L1M3f LINE L1 90 197 -5131 280 222 25 25 chr11 29439025 29439106 -121344447 - MIR SINE MIR 0 262 182 1868 163 34 0 chr11 29439126 29439451 -121344102 + MER7A DNA MER2_type 1 334 -12 4434 202 28 8 chr11 29439552 29440731 -121342822 - L1 LINE L1 -2763 3383 2182 707 88 0 0 chr11 29440732 29440823 -121342730 - AluY SINE Alu -13 298 208 346 233 12 0 chr11 29441220 29441306 -121342247 + MLT1I LTR MaLR 323 409 0 234 316 84 39 chr11 29441883 29442038 -121341515 + L2 LINE L2 2383 2544 -770 257 135 135 0 chr11 29442198 29442250 -121341303 + LTR18B LTR ERVL 530 588 -26 496 235 0 0 chr11 29443274 29443376 -121340177 + L2 LINE L2 2501 2602 -712 628 283 161 18 chr11 29443445 29443774 -121339779 + L2 LINE L2 2890 3265 -48 2348 67 29 0 chr11 29443995 29444339 -121339214 - L1P LINE L1 -2452 3694 3341 238 290 0 0 chr11 29444471 29444533 -121339020 + L2 LINE L2 3204 3265 -7 2477 76 3 10 chr11 29446934 29447248 -121336305 + AluSx SINE Alu 1 312 0 261 296 26 78 chr11 29447259 29447374 -121336179 + MER5A DNA MER1_type 12 120 -69 480 187 88 0 chr11 29447899 29447990 -121335563 - L2 LINE L2 -5 3308 3210 228 111 0 0 chr11 29448008 29448044 -121335509 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 225 0 0 0 chr11 29448660 29448685 -121334868 + (A)n Simple_repeat Simple_repeat 1 25 0 475 285 96 22 chr11 29450293 29450563 -121332990 + HERVL LTR ERVL 2244 2533 -3231 481 287 8 8 chr11 29451232 29451354 -121332199 + L2 LINE L2 3187 3308 -5 269 201 176 31 chr11 29452554 29452713 -121330840 + L1ME4a LINE L1 5939 6120 -1 6373 21 9 3 chr11 29453370 29454115 -121329438 - L1PA3 LINE L1 0 6155 5406 28 29 0 0 chr11 29454400 29454435 -121329118 + AT_rich Low_complexity Low_complexity 1 35 0 282 324 71 40 chr11 29454486 29454711 -121328842 + LTR16A LTR ERVL 210 441 -9 304 371 46 19 chr11 29454751 29455010 -121328543 - L2 LINE L2 -1 3312 3047 3804 164 22 47 chr11 29455031 29455861 -121327692 - L1PA16 LINE L1 -1 6165 5357 2122 126 3 3 chr11 29455869 29456171 -121327382 - AluSg SINE Alu 0 310 9 1629 98 4 0 chr11 29456310 29456555 -121326998 - L1PA16 LINE L1 -1412 4734 4489 * 2422 64 19 2 chr11 29456554 29457052 -121326501 + L1P3 LINE L1 5027 5530 -624 9187 57 6 1 chr11 29457120 29459050 -121324503 - L1PA5 LINE L1 0 6154 4200 337 339 55 27 chr11 29459186 29459478 -121324075 + HERVL LTR ERVL 4741 5040 -614 2483 78 0 0 chr11 29459805 29460113 -121323440 - AluY SINE Alu -3 308 1 341 256 25 16 chr11 29460235 29460356 -121323197 + LTR67 LTR ERVL 436 557 0 469 310 101 10 chr11 29460358 29460576 -121322977 + MIR SINE MIR 10 249 -13 296 294 63 16 chr11 29460879 29461005 -121322548 - MIR SINE MIR -7 255 124 331 294 127 0 chr11 29461011 29461137 -121322416 + L2 LINE L2 3171 3312 -1 811 246 132 60 chr11 29461376 29461855 -121321698 - MLT1H1 LTR MaLR -34 521 9 8866 109 14 2 chr11 29462522 29463854 -121319699 - THE1B-int LTR MaLR -231 1349 2 2167 127 19 32 chr11 29463855 29464224 -121319329 - THE1B LTR MaLR 0 364 1 30 52 0 39 chr11 29466767 29466844 -121316709 + AT_rich Low_complexity Low_complexity 1 74 0 912 199 140 8 chr11 29467230 29467466 -121316087 - MLT1C LTR MaLR -1 466 200 433 258 7 161 chr11 29468068 29468308 -121315245 + MIR SINE MIR 1 184 -78 1919 193 58 17 chr11 29468308 29468723 -121314830 + MSTB1 LTR MaLR 1 432 0 433 258 7 161 chr11 29468723 29468792 -121314761 + MIR SINE MIR 184 262 0 4128 216 142 20 chr11 29469366 29470433 -121313120 + Tigger3b DNA MER2_type 1 1197 -34 242 257 80 62 chr11 29471321 29471434 -121312119 + L1ME LINE L1 52 166 -5953 467 271 32 64 chr11 29471912 29472255 -121311298 + L1ME LINE L1 904 1235 -4884 621 261 78 41 chr11 29472401 29472746 -121310807 + HAL1b LINE L1 608 965 -383 337 205 13 0 chr11 29473009 29473087 -121310466 + L1 LINE L1 3606 3684 -2462 31750 42 34 2 chr11 29473087 29477269 -121306284 + L1P LINE L1 1 4317 -1829 515 68 0 0 chr11 29477369 29477443 -121306110 + L1PA2 LINE L1 6078 6151 -4 4734 134 17 1 chr11 29478400 29479178 -121304375 + L1PA16 LINE L1 5375 6164 -2 280 288 83 45 chr11 29479315 29479447 -121304106 - L2 LINE L2 -5 3308 3172 1177 200 17 30 chr11 29479687 29480043 -121303510 - MLT1E3 LTR MaLR 0 624 215 512 355 105 4 chr11 29480445 29480673 -121302880 - MIR SINE MIR -11 251 1 412 318 43 27 chr11 29480755 29480958 -121302595 - MIR SINE MIR -34 174 17 691 286 47 82 chr11 29481713 29482118 -121301435 - L2 LINE L2 -2 3311 2921 249 281 35 0 chr11 29482329 29482386 -121301167 - L2 LINE L2 -2 3270 3212 1906 161 35 35 chr11 29482388 29482944 -121300609 - MLT2A2 LTR ERVL 0 554 1 407 326 20 0 chr11 29483001 29483148 -121300405 - MER117 DNA MER1_type -1 196 47 462 252 187 48 chr11 29483170 29483400 -121300153 + MLT1H LTR MaLR 286 547 -2 544 252 75 37 chr11 29484787 29485001 -121298552 + MLT1H LTR MaLR 215 436 -113 2466 115 11 19 chr11 29485333 29485707 -121297846 - THE1C LTR MaLR -4 371 1 672 321 4 53 chr11 29486103 29486368 -121297185 - MIR SINE MIR -8 254 3 181 217 145 58 chr11 29486388 29486457 -121297096 + L2 LINE L2 3239 3313 0 197 33 33 0 chr11 29486539 29486569 -121296984 + (CAAAA)n Simple_repeat Simple_repeat 1 31 0 285 258 40 48 chr11 29486958 29487082 -121296471 - MIR SINE MIR -13 249 127 1684 137 33 22 chr11 29487356 29487627 -121295926 + AluSx SINE Alu 30 303 -9 192 224 41 20 chr11 29488245 29488294 -121295259 + L3 LINE CR1 1524 1573 -4 209 278 143 16 chr11 29488902 29489028 -121294525 + MIR3 SINE MIR 31 172 -36 303 242 56 0 chr11 29490548 29490709 -121292844 + (TA)n Simple_repeat Simple_repeat 2 171 0 237 360 147 0 chr11 29491776 29491912 -121291641 - L2 LINE L2 0 3272 3117 868 241 44 31 chr11 29494072 29494300 -121289253 - MIR SINE MIR 0 262 32 1016 167 18 27 chr11 29494306 29494528 -121289025 + L1MA9 LINE L1 6076 6295 -17 348 356 12 19 chr11 29495514 29495674 -121287879 - MIR3 SINE MIR -9 199 41 227 305 148 45 chr11 29495919 29496142 -121287411 + L2 LINE L2 3046 3291 -22 977 120 115 33 chr11 29497866 29498049 -121285504 + MER20 DNA MER1_type 1 198 -21 785 334 89 5 chr11 29498171 29498608 -121284945 - L2 LINE L2 -862 2452 1979 239 266 89 35 chr11 29499010 29499179 -121284374 - L1ME LINE L1 -338 5783 5606 207 0 0 0 chr11 29499268 29499291 -121284262 + (TTG)n Simple_repeat Simple_repeat 2 24 0 5893 111 18 0 chr11 29499309 29500500 -121283053 - L1PA10 LINE L1 -14 6154 4950 6849 120 31 39 chr11 29500500 29501053 -121282500 + L1P LINE L1 3711 4267 -1879 539 56 0 0 chr11 29501053 29501124 -121282429 - L1PA5 LINE L1 -2 6152 6082 6849 120 31 39 chr11 29501124 29501752 -121281801 + L1P LINE L1 4267 4883 -1263 381 248 19 9 chr11 29502001 29502106 -121281447 + MER103 DNA DNA 59 164 -2 200 341 65 49 chr11 29502438 29502561 -121280992 + MIR SINE MIR 20 144 -64 * 207 233 0 0 chr11 29502537 29502580 -121280973 + L2 LINE L2 3228 3270 -2 2083 171 0 9 chr11 29502966 29503316 -121280237 + MLT1A1 LTR MaLR 1 347 -18 352 320 78 0 chr11 29504229 29504357 -121279196 - MIR SINE MIR -80 182 45 571 197 0 66 chr11 29504373 29504510 -121279043 + MER21B LTR ERV1 678 805 -58 234 312 78 0 chr11 29504537 29504614 -121278939 - L2 LINE L2 -242 3030 2948 1710 147 17 10 chr11 29504633 29504926 -121278627 + L1PB4 LINE L1 5848 6142 -14 36 40 0 0 chr11 29504944 29504994 -121278559 + AT_rich Low_complexity Low_complexity 1 50 0 185 211 0 0 chr11 29506867 29506905 -121276648 + L2 LINE L2 3272 3309 -4 22 56 0 0 chr11 29507285 29507321 -121276232 + AT_rich Low_complexity Low_complexity 1 36 0 1557 100 0 0 chr11 29507723 29507943 -121275610 - L1P LINE L1 -1103 5043 4824 4397 179 8 4 chr11 29508083 29509012 -121274541 - L1P4 LINE L1 -702 5466 4534 497 159 18 106 chr11 29509013 29509126 -121274427 - L1M3f LINE L1 -5225 103 1 8634 221 52 21 chr11 29509244 29511932 -121271621 + L1MB2 LINE L1 2092 4852 -1530 4486 47 0 0 chr11 29511932 29512487 -121271066 - L1PA4 LINE L1 0 6155 5601 * 7521 29 6 56 chr11 29512483 29514092 -121269461 - L1PA3 LINE L1 -1 6154 4589 11631 36 1 0 chr11 29514193 29515605 -121267948 - L1PA4 LINE L1 -843 5303 3891 5758 43 3 0 chr11 29515604 29516326 -121267227 + L1P LINE L1 4667 5390 -756 * 2909 181 77 25 chr11 29516326 29517471 -121266082 + L1MB2 LINE L1 4843 6065 -342 1996 237 68 18 chr11 29517471 29517969 -121265584 - MLT1F LTR MaLR -18 524 2 219 114 0 0 chr11 29518082 29518117 -121265436 + (TG)n Simple_repeat Simple_repeat 2 36 0 1249 148 0 6 chr11 29518513 29518695 -121264858 + AluJb SINE Alu 109 289 -23 909 260 74 7 chr11 29518706 29519002 -121264551 + L1MC4 LINE L1 7539 7854 -188 510 239 24 0 chr11 29519010 29519152 -121264401 + L1MC4 LINE L1 7908 8042 0 523 323 32 0 chr11 29519635 29519793 -121263760 - MIR SINE MIR -48 214 52 760 281 80 21 chr11 29520044 29520417 -121263136 + L1ME2 LINE L1 5531 5925 -196 1792 300 60 16 chr11 29520423 29521156 -121262397 - L2 LINE L2 -602 2712 1948 729 246 31 0 chr11 29521209 29521400 -121262153 + L1ME2 LINE L1 5959 6155 -9 228 203 14 0 chr11 29521419 29521488 -121262065 + L1ME4a LINE L1 6051 6120 -1 22 35 0 0 chr11 29523011 29523040 -121260513 + AT_rich Low_complexity Low_complexity 1 29 0 949 121 54 13 chr11 29523049 29523198 -121260355 + AluSg/x SINE Alu 69 223 -87 648 174 9 9 chr11 29523367 29523482 -121260071 - MER33 DNA MER1_type -208 116 2 215 283 0 0 chr11 29523598 29523651 -121259902 + (TG)n Simple_repeat Simple_repeat 1 53 0 348 319 0 25 chr11 29523654 29523773 -121259780 - MIR SINE MIR -11 251 136 450 146 0 0 chr11 29524058 29524140 -121259413 + (TG)n Simple_repeat Simple_repeat 1 82 0 246 128 0 26 chr11 29524157 29524196 -121259357 + LTR67 LTR ERVL 520 557 0 181 67 0 33 chr11 29524573 29524603 -121258950 + L2 LINE L2 3284 3312 -1 413 228 9 0 chr11 29524730 29524845 -121258708 + L1MA4A LINE L1 6042 6278 0 224 313 227 49 chr11 29525840 29526003 -121257550 + L2 LINE L2 3077 3268 -4 205 250 45 0 chr11 29526367 29526411 -121257142 - L2 LINE L2 -86 3186 3141 44 56 0 0 chr11 29526434 29526506 -121257047 + AT_rich Low_complexity Low_complexity 1 72 0 279 382 47 12 chr11 29527172 29527342 -121256211 + MIR SINE MIR 59 234 -28 229 290 0 43 chr11 29528068 29528161 -121255392 + MIR SINE MIR 13 101 -161 21 0 0 0 chr11 29528213 29528234 -121255319 + AT_rich Low_complexity Low_complexity 1 21 0 251 330 125 0 chr11 29529641 29529729 -121253824 - L2 LINE L2 -18 3254 3156 777 298 86 58 chr11 29529910 29531073 -121252480 - L1MC/D LINE L1 -747 5399 4441 282 319 135 38 chr11 29531208 29531393 -121252160 + MIR SINE MIR 48 250 -12 1545 167 14 22 chr11 29532009 29532285 -121251268 - AluJo SINE Alu -33 279 6 180 0 0 0 chr11 29532362 29532382 -121251171 + (A)n Simple_repeat Simple_repeat 1 20 0 219 284 108 54 chr11 29532458 29532532 -121251021 - L2 LINE L2 -47 3225 3148 401 225 148 0 chr11 29532680 29532822 -121250731 - MER103 DNA DNA -3 163 1 223 274 89 59 chr11 29532898 29533033 -121250520 - MIR SINE MIR -54 208 70 224 310 35 23 chr11 29534059 29534146 -121249407 + L2 LINE L2 2915 3002 -270 29 28 0 0 chr11 29534178 29534214 -121249339 + AT_rich Low_complexity Low_complexity 1 36 0 1193 151 9 41 chr11 29535575 29535794 -121247759 - THE1B LTR MaLR 0 364 153 1652 143 66 3 chr11 29535899 29536185 -121247368 - AluSx SINE Alu -5 307 4 815 138 75 13 chr11 29536195 29536354 -121247199 - MLT1C LTR MaLR -293 174 6 24 32 0 0 chr11 29537497 29537528 -121246025 + AT_rich Low_complexity Low_complexity 1 31 0 821 294 68 14 chr11 29538679 29539190 -121244363 + L1MEc LINE L1 1243 1781 -4615 3411 188 29 28 chr11 29539202 29540017 -121243536 + L1M4 LINE L1 4459 5274 -872 729 118 7 138 chr11 29541919 29542071 -121241482 + AluJb SINE Alu 2 133 -179 261 0 0 0 chr11 29542074 29542103 -121241450 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 1088 130 0 7 chr11 29542114 29542268 -121241285 + AluJb SINE Alu 134 286 -26 22 0 0 0 chr11 29542268 29542290 -121241263 + AT_rich Low_complexity Low_complexity 1 22 0 237 333 0 30 chr11 29542578 29542677 -121240876 - L2 LINE L2 -23 3249 3154 367 359 72 18 chr11 29542955 29543079 -121240474 + L2 LINE L2 3097 3234 -38 521 275 41 18 chr11 29543079 29543250 -121240303 + MER5B DNA MER1_type 3 177 -1 367 359 72 18 chr11 29543250 29543292 -121240261 + L2 LINE L2 3234 3272 0 7974 128 42 19 chr11 29543656 29545716 -121237837 + L1PA11 LINE L1 4068 6172 -2 223 376 86 0 chr11 29545716 29545809 -121237744 - MIR SINE MIR -160 102 2 360 349 53 68 chr11 29545828 29546452 -121237101 - L2 LINE L2 -5 3267 2638 13659 172 19 10 chr11 29547656 29551479 -121232074 - L1MA3 LINE L1 -5 7719 3864 6342 132 20 83 chr11 29551479 29553269 -121230284 - L1MA3 LINE L1 -4927 2638 17 386 315 82 0 chr11 29554591 29554737 -121228816 - MER117 DNA MER1_type 0 197 40 295 259 0 0 chr11 29555205 29555259 -121228294 + Zaphod DNA AcHobo 7 60 -3971 2020 296 41 16 chr11 29555284 29555866 -121227687 + MER115 DNA AcHobo 97 693 0 346 317 16 0 chr11 29555866 29555988 -121227565 + LTR67 LTR ERVL 434 557 0 409 254 106 42 chr11 29556148 29556290 -121227263 + MIR3 SINE MIR 13 163 -45 878 296 90 23 chr11 29557349 29557781 -121225772 + LTR33A LTR ERVL 61 521 -2 7636 196 45 18 chr11 29558898 29560785 -121222768 - L1 LINE L1 -1146 5000 3062 6969 56 14 0 chr11 29560892 29561835 -121221718 + L1PA7 LINE L1 5195 6152 -2 266 261 84 25 chr11 29562061 29562180 -121221373 + MIR SINE MIR 110 235 -27 1800 182 3 0 chr11 29562765 29563073 -121220480 - AluJb SINE Alu -3 309 1 185 283 43 0 chr11 29563176 29563222 -121220331 + MIR3 SINE MIR 140 187 -21 194 306 202 40 chr11 29564259 29564383 -121219170 - L2 LINE L2 0 3272 3129 1017 165 93 43 chr11 29565308 29565587 -121217966 - MER33 DNA MER1_type -1 323 31 2088 112 0 3 chr11 29565715 29566000 -121217553 - AluSx SINE Alu -28 284 1 743 285 117 33 chr11 29567637 29568065 -121215488 + LTR16B LTR ERVL 1 464 0 312 304 54 34 chr11 29568252 29568400 -121215153 + L2 LINE L2 2933 3083 -189 3068 228 123 19 chr11 29568409 29568879 -121214674 - L1MC4 LINE L1 -469 7573 7153 1708 174 10 17 chr11 29568879 29569172 -121214381 - AluJo SINE Alu -13 299 9 3068 228 123 19 chr11 29569172 29569191 -121214362 - L1MC4 LINE L1 -889 7153 7137 498 17 0 0 chr11 29569191 29569250 -121214303 + (TATG)n Simple_repeat Simple_repeat 2 60 0 3068 228 123 19 chr11 29569250 29569768 -121213785 - L1MC4 LINE L1 -905 7137 6460 408 229 83 19 chr11 29569979 29570136 -121213417 - MER113 DNA MER1_type? -169 352 186 489 201 223 7 chr11 29570183 29570322 -121213231 - L1ME2 LINE L1 -37 6127 5959 302 287 54 39 chr11 29571275 29571404 -121212149 + L2 LINE L2 3138 3268 -4 248 275 194 31 chr11 29572176 29572336 -121211217 - L2 LINE L2 -825 2489 2304 2625 10 3 0 chr11 29572609 29572901 -121210652 + AluYb8 SINE Alu 1 293 -25 8050 205 12 5 chr11 29573001 29574730 -121208823 - L1 LINE L1 -1152 4994 3254 701 306 60 81 chr11 29574798 29574925 -121208628 + L3 LINE CR1 846 974 -603 2067 95 11 14 chr11 29574925 29575237 -121208316 + AluY SINE Alu 1 311 0 701 306 60 81 chr11 29575237 29575722 -121207831 + L3 LINE CR1 974 1446 -131 587 328 35 68 chr11 29575955 29576352 -121207201 + L1M4c LINE L1 423 806 -5497 348 190 0 0 chr11 29576526 29576584 -121206969 + L1M4c LINE L1 1088 1145 -5168 6968 64 1 6 chr11 29576584 29578325 -121205228 + L1PA7 LINE L1 4426 6153 -1 2598 213 56 18 chr11 29578346 29579082 -121204471 + L1M4c LINE L1 1109 1872 -4512 4814 237 46 7 chr11 29579088 29581614 -121201939 - L1MA4 LINE L1 0 6300 3670 4975 80 0 4 chr11 29581778 29582465 -121201088 - L1PA3 LINE L1 -2 6153 5470 1777 182 102 45 chr11 29683112 29683333 -121100220 + MLT2B2 LTR ERVL 1 208 -307 240 35 0 0 chr11 29683333 29683362 -121100191 + (TC)n Simple_repeat Simple_repeat 2 30 0 1777 182 102 45 chr11 29683362 29683580 -121099973 + MLT2B2 LTR ERVL 208 465 -50 13237 146 33 9 chr11 29683596 29685199 -121098354 - Tigger2 DNA MER2_type -2 2716 1037 2419 71 0 0 chr11 29685199 29685494 -121098059 - AluY SINE Alu -14 297 3 13237 146 33 9 chr11 29685494 29686193 -121097360 - Tigger2 DNA MER2_type -1681 1037 357 181 238 307 0 chr11 29686315 29686416 -121097137 - MIR SINE MIR -94 168 37 248 311 0 27 chr11 29686732 29686806 -121096747 + L2 LINE L2 3242 3313 0 359 288 165 0 chr11 29688364 29688535 -121095018 + MIR SINE MIR 4 203 -59 739 176 38 19 chr11 29689004 29689163 -121094390 + MER5A DNA MER1_type 28 189 0 439 265 129 14 chr11 29689172 29689319 -121094234 - MIR SINE MIR -77 185 22 189 352 44 0 chr11 29689424 29689534 -121094019 + MIR SINE MIR 21 137 -71 204 129 0 0 chr11 29690173 29690204 -121093349 + MIR SINE MIR 119 149 -113 284 211 14 14 chr11 29690257 29690328 -121093225 + MER117 DNA MER1_type 22 92 -105 264 321 43 21 chr11 29690747 29690887 -121092666 + MIR SINE MIR 120 262 0 374 365 114 5 chr11 29693383 29693602 -121089951 - MIR SINE MIR -14 248 6 272 303 79 40 chr11 29695462 29695614 -121087939 + MIR3 SINE MIR 47 204 -4 21 57 0 0 chr11 29696323 29696358 -121087195 + AT_rich Low_complexity Low_complexity 1 35 0 734 275 75 10 chr11 29696409 29696609 -121086944 + MIR SINE MIR 42 254 -8 495 301 53 34 chr11 29696617 29697071 -121086482 - L1MC/D LINE L1 -332 5789 5305 220 305 17 17 chr11 29697244 29697303 -121086250 + L2 LINE L2 3245 3303 -10 423 0 0 0 chr11 29697370 29697417 -121086136 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 368 290 57 48 chr11 29699077 29699201 -121084352 + L2 LINE L2 3139 3263 -9 284 399 65 36 chr11 29699536 29699812 -121083741 - L2 LINE L2 0 3272 2989 22 0 0 0 chr11 29699822 29699844 -121083709 + AT_rich Low_complexity Low_complexity 1 22 0 227 200 0 17 chr11 29700832 29700892 -121082661 + (TA)n Simple_repeat Simple_repeat 2 60 0 279 0 0 0 chr11 29700895 29700926 -121082627 + (CA)n Simple_repeat Simple_repeat 2 32 0 274 29 57 0 chr11 29700937 29700972 -121082581 + MLT2D LTR ERVL 378 414 0 389 311 61 18 chr11 29701805 29701969 -121081584 - LTR16C LTR ERVL -223 268 98 2317 105 0 0 chr11 29702756 29703060 -121080493 - AluSx SINE Alu -8 304 1 186 43 0 0 chr11 29703104 29703127 -121080426 + (T)n Simple_repeat Simple_repeat 1 23 0 181 191 95 0 chr11 29703577 29703619 -121079934 + L2 LINE L2 3265 3310 -3 201 375 0 14 chr11 29703876 29703948 -121079605 + MIR SINE MIR 6 76 -186 1836 161 0 7 chr11 29703968 29704259 -121079294 + AluSx SINE Alu 1 289 -23 2124 194 50 11 chr11 29704284 29704387 -121079166 - L1MB1 LINE L1 0 6168 6070 1959 148 14 38 chr11 29704387 29704731 -121078822 + MER1B DNA MER1_type 2 337 0 2124 194 50 11 chr11 29704731 29705091 -121078462 - L1MB1 LINE L1 -98 6070 5687 215 279 139 13 chr11 29705098 29705177 -121078376 + MIR SINE MIR 172 260 -2 1470 139 0 5 chr11 29705673 29705888 -121077665 + AluSq SINE Alu 37 250 -63 2289 104 0 7 chr11 29706038 29706337 -121077216 - AluSq SINE Alu -15 298 2 788 132 0 105 chr11 29706434 29706586 -121076967 + Tigger1 DNA MER2_type 1 136 -2282 1398 106 14 18 chr11 29706609 29706826 -121076727 + Tigger1 DNA MER2_type 2203 2418 0 364 267 87 7 chr11 29707306 29707383 -121076170 - MIR SINE MIR -18 244 175 511 90 26 0 chr11 29707383 29707461 -121076092 + MADE1 DNA Mariner 1 80 0 364 267 87 7 chr11 29707461 29707533 -121076020 - MIR SINE MIR -87 175 83 433 306 81 86 chr11 29708335 29708756 -121074797 - L2 LINE L2 -27 3245 2827 304 261 0 11 chr11 29709498 29709586 -121073967 + CT-rich Low_complexity Low_complexity 1 87 0 241 429 0 0 chr11 29710138 29710243 -121073310 + L3 LINE CR1 195 299 -1278 2023 134 0 3 chr11 29710701 29710993 -121072560 - AluSx SINE Alu -21 291 1 326 313 33 27 chr11 29712273 29712423 -121071130 + MIR SINE MIR 20 170 -92 219 267 95 57 chr11 29712678 29712783 -121070770 + L2 LINE L2 3200 3308 -5 333 313 121 16 chr11 29712934 29713116 -121070437 + MIR SINE MIR 36 236 -26 505 252 7 0 chr11 29713890 29714025 -121069528 + MIR3 SINE MIR 65 200 -8 729 210 0 0 chr11 29714843 29714967 -121068586 - FLAM_A SINE Alu -9 124 1 2533 253 118 55 chr11 29716091 29717341 -121066212 - L2 LINE L2 0 3313 1928 219 265 124 19 chr11 29718170 29718273 -121065280 - MIR SINE MIR -31 177 55 24 32 0 0 chr11 29718623 29718654 -121064899 + AT_rich Low_complexity Low_complexity 1 31 0 33 25 0 0 chr11 29719436 29719476 -121064077 + AT_rich Low_complexity Low_complexity 1 40 0 244 271 0 17 chr11 29719819 29719878 -121063675 + MIR SINE MIR 199 256 -6 217 216 0 20 chr11 29720401 29720452 -121063101 - MIR SINE MIR -3 259 210 238 238 38 25 chr11 29720493 29720573 -121062980 - MER94 DNA DNA -14 120 40 443 284 97 17 chr11 29720791 29720967 -121062586 - MIR SINE MIR -70 192 3 324 335 30 36 chr11 29721169 29721336 -121062217 - MIR SINE MIR -50 212 47 208 315 34 22 chr11 29721710 29721799 -121061754 + MIR SINE MIR 72 161 -101 606 289 6 25 chr11 29721897 29722056 -121061497 - L2 LINE L2 0 3313 3158 634 253 163 44 chr11 29722077 29722397 -121061156 - MLT1I LTR MaLR -8 401 44 1304 297 109 20 chr11 29722422 29723126 -121060427 - L2 LINE L2 -168 3145 2381 185 382 49 10 chr11 29723151 29723253 -121060300 - MIR SINE MIR -68 194 89 229 395 38 58 chr11 29723595 29723939 -121059614 - L2 LINE L2 0 3272 2936 1314 189 19 19 chr11 29724004 29724263 -121059290 + AluJo SINE Alu 34 292 -20 229 353 92 20 chr11 29724276 29724429 -121059124 + MER117 DNA MER1_type 1 164 -33 214 266 16 16 chr11 29724968 29725032 -121058521 - MIR SINE MIR -3 259 196 3729 202 91 74 chr11 29726325 29727750 -121055803 - Charlie1a DNA MER1_type 0 1455 7 570 216 7 7 chr11 29728138 29728277 -121055276 - LTR37B LTR ERV1 0 468 330 237 108 0 0 chr11 29728304 29728341 -121055212 + (GA)n Simple_repeat Simple_repeat 2 38 0 436 245 0 0 chr11 29728350 29728452 -121055101 - LTR37B LTR ERV1 -169 299 198 522 298 21 11 chr11 29728498 29728689 -121054864 - LTR37B LTR ERV1 -270 198 6 222 91 0 0 chr11 29728701 29728734 -121054819 + (CAA)n Simple_repeat Simple_repeat 2 34 0 27 0 0 0 chr11 29728802 29728829 -121054724 + AT_rich Low_complexity Low_complexity 1 27 0 255 161 36 0 chr11 29728863 29728919 -121054634 + L1MA2 LINE L1 6240 6297 -7 33 0 0 0 chr11 29728920 29728953 -121054600 + AT_rich Low_complexity Low_complexity 1 33 0 368 271 171 0 chr11 29728953 29729082 -121054471 - MIR SINE MIR -56 206 56 414 224 134 0 chr11 29729232 29729366 -121054187 - L1ME4a LINE L1 -1 6120 5969 350 248 46 0 chr11 29729433 29729542 -121054011 - L1ME4a LINE L1 -317 5804 5691 294 265 127 0 chr11 29729553 29729676 -121053877 - MIR SINE MIR -71 191 49 451 327 12 36 chr11 29731822 29731987 -121051566 + MIR3 SINE MIR 38 198 -10 23 33 0 0 chr11 29732147 29732177 -121051376 + AT_rich Low_complexity Low_complexity 1 30 0 1662 183 7 7 chr11 29732177 29732461 -121051092 - AluJb SINE Alu -28 284 1 348 319 30 0 chr11 29732463 29732598 -121050955 + MIR SINE MIR 124 262 0 273 342 0 0 chr11 29732599 29732675 -121050878 + MIR SINE MIR 184 259 -3 568 0 28 0 chr11 29733160 29733232 -121050321 + (TAGA)n Simple_repeat Simple_repeat 2 75 0 1374 211 26 89 chr11 29733236 29733652 -121049901 - MLT1B LTR MaLR 0 390 1 552 305 79 0 chr11 29733996 29734173 -121049380 + L2 LINE L2 2873 3063 -250 2353 167 43 17 chr11 29734186 29734776 -121048777 + MER39B LTR ERV1 10 653 0 269 358 7 29 chr11 29734878 29735015 -121048538 + L2 LINE L2 3180 3313 0 618 279 84 14 chr11 29735673 29735888 -121047665 - MIR SINE MIR -27 235 6 493 268 21 21 chr11 29736073 29736215 -121047338 - MIR3 SINE MIR -5 203 62 182 309 18 0 chr11 29737326 29737381 -121046172 + MIR SINE MIR 97 152 -110 440 332 81 36 chr11 29737405 29737652 -121045901 - MIR SINE MIR 0 262 5 21 0 0 0 chr11 29738463 29738484 -121045069 + AT_rich Low_complexity Low_complexity 1 21 0 1994 154 0 3 chr11 29740084 29740383 -121043170 + AluSx SINE Alu 1 298 -14 2586 174 41 85 chr11 29740913 29741575 -121041978 + LTR27 LTR ERV1 3 635 -1 185 250 16 16 chr11 29741586 29741650 -121041903 + MIR SINE MIR 149 212 -50 188 368 0 0 chr11 29744146 29744214 -121039339 - L2 LINE L2 -1 3271 3204 354 342 19 47 chr11 29744767 29745024 -121038529 + L2 LINE L2 2835 3084 -188 369 0 0 0 chr11 29745078 29745119 -121038434 + (TG)n Simple_repeat Simple_repeat 2 42 0 187 277 0 0 chr11 29745123 29745170 -121038383 + L2 LINE L2 3191 3237 -76 1969 196 65 11 chr11 29745434 29745877 -121037676 + MLT1C LTR MaLR 1 467 0 27 0 0 0 chr11 29746842 29746869 -121036684 + AT_rich Low_complexity Low_complexity 1 27 0 412 327 34 92 chr11 29747820 29748147 -121035406 + L2 LINE L2 2965 3272 0 2458 81 7 0 chr11 29748644 29748953 -121034600 - AluSx SINE Alu -1 311 1 254 313 21 31 chr11 29749029 29749125 -121034428 + MER5A DNA MER1_type 84 178 -11 289 409 120 12 chr11 29749246 29749505 -121034048 + L2 LINE L2 2967 3253 -19 183 204 0 0 chr11 29749506 29749550 -121034003 + (TTCA)n Simple_repeat Simple_repeat 3 46 0 22 35 0 0 chr11 29749983 29750012 -121033541 + AT_rich Low_complexity Low_complexity 1 29 0 22 56 0 0 chr11 29750075 29750111 -121033442 + AT_rich Low_complexity Low_complexity 1 36 0 217 313 17 61 chr11 29750244 29750359 -121033194 - MIR SINE MIR -50 212 103 560 300 144 11 chr11 29755988 29756258 -121027295 + L2 LINE L2 3008 3313 0 2153 145 105 13 chr11 29756397 29756789 -121026764 - MSTA LTR MaLR 0 428 1 308 160 76 0 chr11 29757872 29757991 -121025562 + (TA)n Simple_repeat Simple_repeat 1 128 0 2165 120 0 0 chr11 29758117 29758408 -121025145 - AluSx SINE Alu -21 291 1 1000 195 22 34 chr11 29758813 29759080 -121024473 - L1MC5 LINE L1 -722 7239 6976 23 86 0 0 chr11 29759194 29759252 -121024301 + AT_rich Low_complexity Low_complexity 1 58 0 1666 284 104 20 chr11 29759402 29759998 -121023555 + L2 LINE L2 2155 2800 -514 636 236 46 36 chr11 29760173 29760368 -121023185 + L2 LINE L2 3117 3313 0 229 190 13 25 chr11 29760411 29760490 -121023063 - L1M3de LINE L1 -4833 2045 1968 361 333 48 29 chr11 29760503 29760794 -121022759 - L1MEc LINE L1 -5327 1713 1355 272 298 77 40 chr11 29761398 29761646 -121021907 - L1MC/D LINE L1 -2152 5656 5400 21 71 0 0 chr11 29762273 29762315 -121021238 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr11 29762662 29762683 -121020870 + AT_rich Low_complexity Low_complexity 1 21 0 296 298 44 44 chr11 29762767 29763039 -121020514 - L1MC/D LINE L1 -1998 4148 3877 2044 124 7 0 chr11 29763219 29763510 -121020043 - AluSx SINE Alu -19 293 1 251 303 20 10 chr11 29763834 29763933 -121019620 + LTR67 LTR ERVL 458 557 0 2168 116 7 0 chr11 29765287 29765590 -121017963 - AluSq SINE Alu -6 307 3 255 227 13 27 chr11 29765608 29765683 -121017870 - MLT1-int LTR MaLR -1294 77 4 307 293 122 8 chr11 29765925 29766048 -121017505 - MLT1H LTR MaLR -401 148 12 281 401 12 66 chr11 29766165 29766589 -121016964 - L3 LINE CR1 -1 1576 1176 23 0 0 0 chr11 29767625 29767648 -121015905 + AT_rich Low_complexity Low_complexity 1 23 0 231 291 73 46 chr11 29768387 29768538 -121015015 + MIR SINE MIR 99 253 -9 183 80 0 0 chr11 29768598 29768623 -121014930 + (TG)n Simple_repeat Simple_repeat 2 26 0 367 353 0 0 chr11 29769385 29769507 -121014046 + MIR3 SINE MIR 33 154 -54 362 238 9 9 chr11 29769528 29769633 -121013920 - LTR67 LTR ERVL -25 532 428 268 277 31 17 chr11 29770111 29770215 -121013338 - MER5A DNA MER1_type -76 113 2 387 0 0 0 chr11 29770243 29770286 -121013267 + (CA)n Simple_repeat Simple_repeat 2 44 0 249 315 142 24 chr11 29771091 29771218 -121012335 + MIR SINE MIR 55 196 -66 194 103 0 26 chr11 29771265 29771304 -121012249 + (TTA)n Simple_repeat Simple_repeat 2 39 0 209 347 27 0 chr11 29771591 29771666 -121011887 - MIR3 SINE MIR -33 175 99 478 267 48 14 chr11 29771819 29771965 -121011588 - L2 LINE L2 -1 3312 3162 368 249 162 27 chr11 29772712 29772897 -121010656 + MIR SINE MIR 43 252 -10 1587 234 45 92 chr11 29773233 29773788 -121009765 - MER77 LTR ERV1 -8 597 69 212 277 0 0 chr11 29774200 29774247 -121009306 - L2 LINE L2 0 3313 3267 410 352 90 20 chr11 29774704 29775059 -121008494 - L2 LINE L2 -586 2728 2349 1387 244 28 3 chr11 29775210 29775530 -121008023 + MLT1D LTR MaLR 178 505 0 2361 226 18 50 chr11 29775530 29776208 -121007345 + MLT1D-int LTR MaLR 1 656 -715 1707 221 11 160 chr11 29776266 29776371 -121007182 + MLT1D-int LTR MaLR 661 780 -591 2391 71 10 10 chr11 29776371 29776680 -121006873 + AluY SINE Alu 1 309 -2 1707 221 11 160 chr11 29776680 29777379 -121006174 + MLT1D-int LTR MaLR 780 1345 -26 2119 192 27 74 chr11 29777393 29777909 -121005644 + MLT1D LTR MaLR 1 492 -13 297 316 101 32 chr11 29778135 29778293 -121005260 + MIR SINE MIR 21 189 -73 760 219 158 5 chr11 29778325 29778521 -121005032 - MIR SINE MIR -30 232 7 1265 308 122 18 chr11 29779815 29780413 -121003140 - L2 LINE L2 -622 2692 2033 3236 149 23 21 chr11 29780596 29781119 -121002434 + MER1A DNA MER1_type 1 524 -3 23 0 0 0 chr11 29781385 29781408 -121002145 + AT_rich Low_complexity Low_complexity 1 23 0 451 293 81 60 chr11 29782143 29782426 -121001127 - LTR67 LTR ERVL -164 393 105 2095 108 0 0 chr11 29782891 29783168 -121000385 + AluSc SINE Alu 1 277 -32 1164 78 13 13 chr11 29783168 29783482 -121000071 + (GAAA)n Simple_repeat Simple_repeat 1 314 0 1189 252 78 5 chr11 29784007 29784380 -120999173 - L1ME2 LINE L1 0 6164 5765 493 279 120 13 chr11 29784584 29784742 -120998811 - MIR SINE MIR -69 193 19 402 353 68 14 chr11 29785127 29785348 -120998205 + MIR SINE MIR 20 252 -10 733 292 53 13 chr11 29785575 29785801 -120997752 + MIR SINE MIR 13 247 -15 494 280 86 16 chr11 29786214 29786400 -120997153 + MIR SINE MIR 64 262 0 2124 134 125 2 chr11 29787285 29787661 -120995892 + MSTA LTR MaLR 1 428 0 408 279 123 19 chr11 29789305 29789459 -120994094 - L2 LINE L2 -10 3262 3093 248 250 0 0 chr11 29789694 29789746 -120993807 + (TCTA)n Simple_repeat Simple_repeat 2 53 0 810 63 46 11 chr11 29789972 29790146 -120993407 + (TA)n Simple_repeat Simple_repeat 1 180 0 1819 200 46 10 chr11 29790831 29791489 -120992064 + L1M4c LINE L1 1675 2833 -3549 25393 146 21 12 chr11 29791494 29792715 -120990838 + L1PA8A LINE L1 2 1210 -5236 189 74 0 0 chr11 29792715 29792742 -120990811 + (CAA)n Simple_repeat Simple_repeat 1 27 0 25393 146 21 12 chr11 29792742 29797844 -120985709 + L1PA8A LINE L1 1210 6446 0 9697 203 25 12 chr11 29797828 29798669 -120984884 + L1PA16 LINE L1 2816 3645 -2757 * 1927 174 0 16 chr11 29798669 29798985 -120984568 + AluJb SINE Alu 1 311 -1 9697 203 25 12 chr11 29798985 29801669 -120981884 + L1PA16 LINE L1 3645 6384 -18 205 180 33 16 chr11 29801683 29801744 -120981809 + A-rich Low_complexity Low_complexity 3 64 0 185 179 0 18 chr11 29802286 29802342 -120981211 + (CA)n Simple_repeat Simple_repeat 2 56 0 1601 150 0 0 chr11 29802674 29802907 -120980646 + AluJb SINE Alu 1 233 -79 1895 162 39 43 chr11 29802907 29803267 -120980286 + THE1B LTR MaLR 1 360 -72 1185 66 0 0 chr11 29803267 29803419 -120980134 - L1PA5 LINE L1 -4 6150 5999 1895 162 39 43 chr11 29803419 29803480 -120980073 + THE1B LTR MaLR 360 420 -12 219 69 0 0 chr11 29803491 29803520 -120980033 + (TA)n Simple_repeat Simple_repeat 1 29 0 10432 136 16 1 chr11 29803520 29805077 -120978476 + THE1B-int LTR MaLR 1 1580 0 1936 149 27 49 chr11 29805077 29805446 -120978107 + THE1B LTR MaLR 3 364 0 414 164 14 0 chr11 29805446 29805519 -120978034 + AluJb SINE Alu 229 302 -10 22 0 0 0 chr11 29805820 29805842 -120977711 + AT_rich Low_complexity Low_complexity 1 22 0 1352 130 65 0 chr11 29806362 29806562 -120976991 - AluSx SINE Alu -99 213 1 340 344 55 12 chr11 29808134 29808297 -120975256 + L1MC4a LINE L1 3521 3690 -2456 2133 75 6 70 chr11 29808333 29808664 -120974889 + AluSg SINE Alu 1 310 0 229 250 0 0 chr11 29808670 29808730 -120974823 + L1P LINE L1 3739 3798 -2348 231 204 143 82 chr11 29809260 29809325 -120974228 - MER5C DNA MER1_type 0 324 250 1791 164 0 30 chr11 29809325 29809630 -120973923 - AluJb SINE Alu -16 296 1 231 204 143 82 chr11 29809630 29809662 -120973891 - MER5C DNA MER1_type -74 250 221 371 308 65 34 chr11 29809812 29810228 -120973325 + L1MC4a LINE L1 4519 4947 -1199 21 71 0 0 chr11 29810270 29810312 -120973241 + AT_rich Low_complexity Low_complexity 1 42 0 26 0 0 0 chr11 29810485 29810511 -120973042 + AT_rich Low_complexity Low_complexity 1 26 0 659 312 85 20 chr11 29810524 29811018 -120972535 + L1MC4a LINE L1 5305 5830 -1978 * 1610 274 106 19 chr11 29811010 29811587 -120971966 + L1M3e LINE L1 466 1092 -6397 * 2382 266 43 45 chr11 29811585 29811977 -120971576 + L1M3e LINE L1 2018 2409 -5156 2267 118 0 6 chr11 29811977 29812291 -120971262 - AluSx SINE Alu 0 312 1 2382 266 43 45 chr11 29812291 29813673 -120969880 + L1M3e LINE L1 2409 3751 -3814 950 191 47 63 chr11 29813677 29814016 -120969537 - MSTD LTR MaLR -4 392 9 6216 244 28 47 chr11 29814023 29815645 -120967908 - MSTD-int LTR MaLR 0 1735 144 21544 144 41 12 chr11 29815646 29816207 -120967346 - L1 LINE L1 -3524 4041 3497 186 43 0 0 chr11 29816207 29816230 -120967323 + (TTCC)n Simple_repeat Simple_repeat 3 25 0 21544 144 41 12 chr11 29816230 29819585 -120963968 - L1 LINE L1 -4068 3497 16 576 194 79 24 chr11 29819570 29819735 -120963818 - MSTD-int LTR MaLR -1560 175 2 * 1157 202 151 42 chr11 29819737 29820094 -120963459 - MSTD LTR MaLR 0 396 1 1639 253 69 21 chr11 29820095 29820657 -120962896 + L1M3e LINE L1 3748 4336 -3229 351 0 0 0 chr11 29822117 29822156 -120961397 + (TG)n Simple_repeat Simple_repeat 2 40 0 22 0 0 0 chr11 29822720 29822742 -120960811 + AT_rich Low_complexity Low_complexity 1 22 0 266 170 6 2 chr11 29822910 29822984 -120960569 - MLT1H LTR MaLR -20 606 461 681 243 55 72 chr11 29823096 29823388 -120960165 - MLT1H LTR MaLR -251 298 12 2582 205 78 8 chr11 29823785 29824574 -120958979 + MER73 LTR ERVL 1 641 -3 699 273 28 0 chr11 29825174 29825350 -120958203 + MER117 DNA MER1_type 16 196 -1 201 39 0 0 chr11 29825382 29825408 -120958145 + (A)n Simple_repeat Simple_repeat 1 26 0 187 313 62 16 chr11 29825410 29825474 -120958079 - MIR SINE MIR -106 102 36 240 217 83 0 chr11 29825920 29825980 -120957573 + LTR67 LTR ERVL 491 555 -2 2271 83 3 61 chr11 29826268 29826595 -120956958 - AluSp SINE Alu -5 308 1 2081 104 3 17 chr11 29828798 29829117 -120954436 - AluSg SINE Alu 0 310 1 252 335 141 12 chr11 29829355 29829525 -120954028 + MIR SINE MIR 22 213 -49 249 300 31 31 chr11 29829710 29829840 -120953713 - L2 LINE L2 -2 3270 3141 742 250 54 73 chr11 29830173 29830433 -120953120 - MIR SINE MIR 0 262 8 301 260 8 8 chr11 29830696 29830823 -120952730 + CT-rich Low_complexity Low_complexity 2 128 0 2078 68 0 0 chr11 29831103 29831374 -120952179 + AluY SINE Alu 37 307 0 29 28 0 0 chr11 29831748 29831784 -120951769 + AT_rich Low_complexity Low_complexity 1 36 0 202 345 35 0 chr11 29832290 29832377 -120951176 - MIR SINE MIR -5 257 168 2452 80 0 0 chr11 29833151 29833462 -120950091 - AluY SINE Alu 0 311 1 617 274 157 43 chr11 29834194 29834519 -120949034 + LTR33 LTR ERVL 1 362 -159 856 287 35 4 chr11 29834786 29835040 -120948513 - MIR SINE MIR 0 262 1 461 283 122 27 chr11 29835360 29835802 -120947751 + L1ME4a LINE L1 5565 6048 -73 209 324 73 59 chr11 29836193 29836329 -120947224 + MIR SINE MIR 55 192 -70 527 283 7 28 chr11 29836408 29836553 -120947000 + MIR3 SINE MIR 67 208 0 318 146 11 45 chr11 29837279 29837368 -120946185 + (CATA)n Simple_repeat Simple_repeat 3 88 0 233 335 42 12 chr11 29837410 29837533 -120946020 - MIR3 SINE MIR -51 157 59 181 338 15 0 chr11 29838262 29838330 -120945223 + L2 LINE L2 3204 3272 0 320 0 25 0 chr11 29838677 29838717 -120944836 + (GA)n Simple_repeat Simple_repeat 1 41 0 263 324 108 7 chr11 29838749 29838888 -120944665 + MLT1K LTR MaLR 422 574 -14 1666 167 18 7 chr11 29839062 29839343 -120944210 - AluJb SINE Alu 0 312 29 360 314 82 36 chr11 29839499 29839693 -120943860 + MIR SINE MIR 4 206 -56 229 208 57 0 chr11 29839747 29839800 -120943753 - L2 LINE L2 0 3272 3217 859 275 168 28 chr11 29840387 29840714 -120942839 - L2 LINE L2 -100 3213 2841 313 300 87 60 chr11 29840736 29840886 -120942667 + L2 LINE L2 3117 3270 -2 281 286 102 20 chr11 29841459 29841557 -120941996 - MIR3 SINE MIR -90 118 13 341 185 0 12 chr11 29843461 29843542 -120940011 + GA-rich Low_complexity Low_complexity 3 82 0 403 253 54 76 chr11 29843543 29843777 -120939776 + L1 LINE L1 2810 3042 -3104 21 36 0 0 chr11 29843794 29843822 -120939731 + AT_rich Low_complexity Low_complexity 1 28 0 330 239 42 2 chr11 29843832 29843949 -120939604 + L1 LINE L1 3856 3976 -2170 389 361 101 15 chr11 29843956 29844432 -120939121 + L1 LINE L1 4023 4539 -1607 1579 201 10 13 chr11 29845040 29845348 -120938205 - AluJo SINE Alu -5 307 1 367 310 41 55 chr11 29845522 29845793 -120937760 + MLT1J LTR MaLR 241 507 -4 211 321 38 0 chr11 29845818 29845871 -120937682 - L2 LINE L2 -78 3194 3140 198 191 0 0 chr11 29846012 29846059 -120937494 + (TATG)n Simple_repeat Simple_repeat 3 49 0 582 250 5 88 chr11 29847700 29847892 -120935661 - MER5B DNA MER1_type -2 176 1 21621 96 15 6 chr11 29848090 29853867 -120929686 - L1PA7 LINE L1 0 6469 648 10637 29 0 0 chr11 29853866 29855125 -120928428 - L1P LINE L1 -1031 5115 3857 * 1655 25 0 0 chr11 29855122 29855318 -120928235 + L1P LINE L1 5085 5280 -866 * 285 140 35 35 chr11 29855988 29856045 -120927508 + MIR SINE MIR 58 114 -148 22 56 0 0 chr11 29856500 29856536 -120927017 + AT_rich Low_complexity Low_complexity 1 36 0 313 298 79 102 chr11 29856651 29856916 -120926637 - L2 LINE L2 0 3272 3014 284 350 133 51 chr11 29857099 29857744 -120925809 - L2 LINE L2 -586 2728 2031 877 233 28 60 chr11 29857798 29858047 -120925506 - MER102b DNA MER1_type -2 339 99 279 222 16 0 chr11 29858384 29858447 -120925106 + MER94 DNA DNA 2 65 -69 211 261 14 43 chr11 29859493 29859562 -120923991 - MIR3 SINE MIR -21 187 121 24 91 0 0 chr11 29860206 29860272 -120923281 + AT_rich Low_complexity Low_complexity 1 66 0 631 228 117 0 chr11 29860532 29860677 -120922876 + MLT1E LTR MaLR 1 162 -431 182 375 0 23 chr11 29862556 29862644 -120920909 - MIR SINE MIR -124 138 53 1809 207 40 42 chr11 29864525 29865028 -120918525 - MLT1D LTR MaLR -3 502 1 207 394 71 0 chr11 29865368 29865467 -120918086 - L2 LINE L2 -30 3242 3137 2369 78 0 16 chr11 29866120 29866429 -120917124 + AluY SINE Alu 2 305 -6 1871 153 29 40 chr11 29867225 29867604 -120915949 + THE1C LTR MaLR 1 375 0 212 143 71 0 chr11 29868248 29868290 -120915263 + L2 LINE L2 3216 3260 -12 249 33 0 0 chr11 29868290 29868320 -120915233 + (ATTG)n Simple_repeat Simple_repeat 2 31 0 196 326 20 20 chr11 29869239 29869337 -120914216 + L2 LINE L2 2875 2972 -341 197 292 57 99 chr11 29869501 29869693 -120913860 + L2 LINE L2 3130 3313 0 * 255 246 186 8 chr11 29869680 29869798 -120913755 + MIR SINE MIR 92 230 -32 208 313 31 0 chr11 29869862 29869926 -120913627 + MIR3 SINE MIR 92 157 -51 2208 142 73 19 chr11 29870357 29870767 -120912786 - MSTB1 LTR MaLR 0 432 1 738 269 92 21 chr11 29871123 29871361 -120912192 - MIR SINE MIR 0 262 8 920 253 96 94 chr11 29871393 29871927 -120911626 + MLT1F LTR MaLR 5 539 -3 278 271 0 42 chr11 29871962 29872058 -120911495 + CT-rich Low_complexity Low_complexity 3 94 0 298 299 142 8 chr11 29872058 29872185 -120911368 - MIR SINE MIR -14 248 105 573 285 50 11 chr11 29872378 29872557 -120910996 - MIR SINE MIR 0 262 77 291 267 158 17 chr11 29872600 29872720 -120910833 + L2 LINE L2 3136 3272 0 324 332 45 64 chr11 29873286 29873488 -120910065 - L2 LINE L2 0 3272 3075 263 315 144 18 chr11 29874157 29874379 -120909174 + L2 LINE L2 477 726 -2588 342 276 103 33 chr11 29875278 29875521 -120908032 - L1M4 LINE L1 -2012 4370 4111 22 0 0 0 chr11 29876145 29876167 -120907386 + AT_rich Low_complexity Low_complexity 1 22 0 1535 194 16 57 chr11 29876402 29876789 -120906764 - L1MA7 LINE L1 -10 6281 5911 1367 207 66 18 chr11 29876809 29877157 -120906396 - MLT1A1 LTR MaLR -11 354 1 2641 266 81 7 chr11 29877233 29878348 -120905205 - L1M4 LINE L1 -4519 1865 827 207 0 0 0 chr11 29878508 29878531 -120905022 + (TTG)n Simple_repeat Simple_repeat 2 24 0 662 342 101 47 chr11 29878759 29879373 -120904180 - L1M3d LINE L1 -5237 654 8 808 312 119 56 chr11 29880385 29881118 -120902435 + L2 LINE L2 2518 3313 0 223 333 48 0 chr11 29881679 29881742 -120901811 + L2 LINE L2 3148 3213 -59 21 0 0 0 chr11 29882340 29882361 -120901192 + AT_rich Low_complexity Low_complexity 1 21 0 390 319 52 52 chr11 29882984 29883194 -120900359 - MIR SINE MIR -5 257 48 21 0 0 0 chr11 29884477 29884498 -120899055 + AT_rich Low_complexity Low_complexity 1 21 0 260 379 42 27 chr11 29884706 29885229 -120898324 - L2 LINE L2 -214 3058 2527 180 388 19 10 chr11 29885668 29885771 -120897782 - L2 LINE L2 -980 2334 2231 1129 65 13 7 chr11 29886145 29886299 -120897254 + L1PA5 LINE L1 5996 6150 -4 290 298 12 0 chr11 29887444 29887528 -120896025 - L2 LINE L2 0 3272 3188 290 298 96 40 chr11 29888586 29888696 -120894857 + MIR SINE MIR 39 162 -100 2216 111 3 0 chr11 29888696 29888993 -120894560 + AluSc SINE Alu 1 298 -11 290 298 96 40 chr11 29888993 29889061 -120894492 + MIR SINE MIR 162 225 -37 233 241 18 80 chr11 29890257 29890369 -120893184 + MIR SINE MIR 152 256 -6 243 322 144 0 chr11 29890523 29890641 -120892912 - MIR3 SINE MIR -62 146 12 574 287 90 37 chr11 29891926 29892001 -120891552 + L2 LINE L2 991 1061 -2253 658 337 47 49 chr11 29892001 29892452 -120891101 + LTR16A LTR ERVL 1 450 0 574 287 90 37 chr11 29892452 29892644 -120890909 + L2 LINE L2 1061 1272 -2042 267 247 12 24 chr11 29892762 29892847 -120890706 + L2 LINE L2 1598 1681 -1633 576 323 55 17 chr11 29892881 29893116 -120890437 + MIR SINE MIR 11 254 -8 1620 324 102 23 chr11 29893186 29894151 -120889402 + L2 LINE L2 1732 2772 -542 385 345 47 30 chr11 29894249 29894481 -120889072 + L2 LINE L2 2932 3167 -146 247 116 93 0 chr11 29894481 29894524 -120889029 + MSTB2 LTR MaLR 1 47 -410 889 142 0 0 chr11 29894640 29894767 -120888786 - AluY SINE Alu -11 300 174 655 227 30 17 chr11 29894796 29894990 -120888563 + MSTB2 LTR MaLR 201 457 0 332 265 140 37 chr11 29894990 29895126 -120888427 + L2 LINE L2 3163 3312 -1 22 0 0 0 chr11 29945422 29945444 -120838109 + AT_rich Low_complexity Low_complexity 1 22 0 1231 184 0 93 chr11 29945444 29945787 -120837766 + AluY SINE Alu 1 311 0 251 271 178 28 chr11 29946063 29946170 -120837383 + LTR16A LTR ERVL 29 151 -299 433 261 97 61 chr11 29946198 29946363 -120837190 + LTR16A LTR ERVL 209 379 -71 252 345 105 66 chr11 29947431 29948278 -120835275 + L2 LINE L2 1691 2570 -744 305 290 62 43 chr11 29948651 29948813 -120834740 + L2 LINE L2 3149 3313 0 22 0 0 0 chr11 29949315 29949337 -120834216 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr11 29949667 29949695 -120833858 + AT_rich Low_complexity Low_complexity 1 28 0 247 206 0 43 chr11 29950201 29950293 -120833260 + (TATATG)n Simple_repeat Simple_repeat 4 91 0 203 264 75 0 chr11 29950382 29950435 -120833118 - MIR SINE MIR -3 259 203 236 383 139 0 chr11 29950454 29950569 -120832984 + L2 LINE L2 3142 3272 0 29 0 0 0 chr11 29951025 29951054 -120832499 + AT_rich Low_complexity Low_complexity 1 29 0 5454 179 35 26 chr11 29951428 29952765 -120830788 + L1PB3 LINE L1 3985 5347 -807 2346 106 15 3 chr11 29952765 29953105 -120830448 + L1PA10 LINE L1 5821 6164 -4 5454 179 35 26 chr11 29953105 29953918 -120829635 + L1PB3 LINE L1 5347 6151 -3 463 332 4 97 chr11 29954056 29954324 -120829229 - L2 LINE L2 -43 3229 2987 377 295 60 56 chr11 29954631 29954899 -120828654 - L2 LINE L2 -928 2386 2118 367 243 114 14 chr11 29955024 29955164 -120828389 - L1ME4a LINE L1 0 6121 5968 357 229 146 73 chr11 29955196 29955401 -120828152 + MLT1H LTR MaLR 124 343 -206 334 200 56 22 chr11 29955478 29955568 -120827985 + MLT1H LTR MaLR 455 547 -2 274 376 20 0 chr11 29955618 29955719 -120827834 + MIR SINE MIR 40 142 -66 1589 162 40 15 chr11 29955852 29956180 -120827373 + MER44D DNA MER2_type 1 606 -3 379 303 67 55 chr11 29956365 29956530 -120827023 - MIR SINE MIR -90 172 6 239 0 32 0 chr11 29957945 29957976 -120825577 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 27 0 0 0 chr11 29959177 29959204 -120824349 + AT_rich Low_complexity Low_complexity 1 27 0 227 351 53 11 chr11 29959258 29959352 -120824201 - L2 LINE L2 -199 3073 2976 307 198 40 20 chr11 29961020 29961121 -120822432 + (TA)n Simple_repeat Simple_repeat 2 104 0 1541 181 8 8 chr11 29961308 29961573 -120821980 + AluJo SINE Alu 13 277 -35 375 291 16 16 chr11 29961983 29962110 -120821443 - LTR16C LTR ERVL -12 479 353 292 319 52 30 chr11 29962785 29962920 -120820633 - L2 LINE L2 0 3313 3176 356 284 91 72 chr11 29963187 29963451 -120820102 - HAL1 LINE L1 -865 1642 1374 1668 182 0 35 chr11 29963473 29963792 -120819761 - AluJo SINE Alu -4 308 1 2301 97 0 10 chr11 29964370 29964668 -120818885 - AluSq SINE Alu -18 295 1 314 309 125 34 chr11 29965000 29965274 -120818279 - L1ME4a LINE L1 -530 5632 5450 362 310 67 34 chr11 29965276 29965840 -120817713 - L1ME4a LINE L1 -1484 4662 4080 200 351 0 0 chr11 29965984 29966058 -120817495 - MIR SINE MIR -33 229 156 507 289 51 71 chr11 29966058 29966556 -120816997 - L1ME4a LINE L1 -2176 3970 3487 3239 115 37 54 chr11 29966556 29967146 -120816407 - LTR19B LTR ERV1 0 580 1 507 289 51 71 chr11 29967146 29967309 -120816244 - L1ME4a LINE L1 -2659 3487 3322 1215 161 87 29 chr11 29967309 29967551 -120816002 - AluJo SINE Alu -45 267 12 21 36 0 0 chr11 29967591 29967619 -120815934 + AT_rich Low_complexity Low_complexity 1 28 0 2441 50 0 0 chr11 29967702 29968001 -120815552 - L1PA3 LINE L1 -3 6152 5854 194 298 39 39 chr11 29968809 29968913 -120814640 + L2 LINE L2 2546 2649 -665 2152 109 13 0 chr11 29969116 29969418 -120814135 - AluSq SINE Alu -7 306 1 453 283 50 85 chr11 29969496 29969779 -120813774 - HAL1 LINE L1 -1424 1083 811 235 289 174 41 chr11 29970848 29970969 -120812584 + MIR3 SINE MIR 20 156 -52 244 258 113 0 chr11 29971433 29971530 -120812023 + MIR SINE MIR 155 262 0 466 322 22 33 chr11 29971871 29972051 -120811502 + MIR SINE MIR 37 214 -48 439 284 34 14 chr11 29972088 29972236 -120811317 - MIR SINE MIR -65 197 47 211 391 65 5 chr11 29972347 29972531 -120811022 + L3b LINE CR1 1262 1456 -127 271 303 171 13 chr11 29972580 29972732 -120810821 + MIR SINE MIR 14 189 -73 231 279 15 0 chr11 29972788 29972856 -120810697 + GA-rich Low_complexity Low_complexity 2 70 0 230 242 16 0 chr11 29973043 29973105 -120810448 + (CA)n Simple_repeat Simple_repeat 2 64 0 592 324 50 8 chr11 29973204 29973442 -120810111 + MIR SINE MIR 11 258 -4 23 0 0 0 chr11 29973500 29973523 -120810030 + AT_rich Low_complexity Low_complexity 1 23 0 350 399 75 0 chr11 29973648 29973836 -120809717 - L3 LINE CR1 -83 1494 1293 225 0 0 0 chr11 29973838 29973863 -120809690 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 1286 281 94 24 chr11 29973878 29974407 -120809146 - MLT1H1 LTR MaLR 0 555 1 446 294 87 28 chr11 29975706 29975924 -120807629 - Charlie8 DNA MER1_type -2186 231 1 213 167 24 0 chr11 29976909 29976951 -120806602 + (TA)n Simple_repeat Simple_repeat 2 44 0 1098 244 71 83 chr11 29977004 29977426 -120806127 + MLT1F LTR MaLR 64 455 -87 1727 182 7 0 chr11 29978517 29978813 -120804740 - AluSx SINE Alu -14 298 1 469 331 46 36 chr11 29979432 29979713 -120803840 + L2 LINE L2 2589 2872 -442 2482 67 0 6 chr11 29980089 29980402 -120803151 + AluY SINE Alu 1 311 0 1708 132 169 18 chr11 29981206 29981277 -120802276 - THE1C LTR MaLR 0 375 316 2157 63 0 60 chr11 29981277 29981611 -120801942 + AluY SINE Alu 1 316 0 1708 132 169 18 chr11 29981611 29981864 -120801689 - THE1C LTR MaLR -59 316 1 512 242 70 0 chr11 29981896 29982024 -120801529 - MIR SINE MIR -56 206 70 21 36 0 0 chr11 29982062 29982090 -120801463 + AT_rich Low_complexity Low_complexity 1 28 0 370 346 106 40 chr11 29982206 29982802 -120800751 + L1ME4a LINE L1 5290 5924 -197 24 0 0 0 chr11 29983153 29983177 -120800376 + AT_rich Low_complexity Low_complexity 1 24 0 448 303 134 13 chr11 29983340 29983571 -120799982 - LTR33A LTR ERVL -261 262 4 363 316 44 0 chr11 29983724 29983838 -120799715 - MER94 DNA DNA -15 119 1 624 201 84 29 chr11 29984673 29984963 -120798590 - MLT1A2 LTR MaLR 0 374 2 24 77 0 0 chr11 29985079 29985131 -120798422 + AT_rich Low_complexity Low_complexity 1 52 0 265 270 112 73 chr11 29986047 29986225 -120797328 + MLT1I LTR MaLR 98 282 -127 968 191 70 44 chr11 29986957 29987272 -120796281 - MER33 DNA MER1_type -1 323 1 7364 24 2 0 chr11 29987552 29988417 -120795136 - L1PA3 LINE L1 0 6155 5289 2921 20 0 0 chr11 29988412 29988763 -120794790 + L1PA3 LINE L1 4949 5299 -847 * 2127 96 4 0 chr11 29988803 29989107 -120794446 + AluY SINE Alu 1 305 0 13526 143 21 36 chr11 29989300 29990696 -120792857 + Tigger1 DNA MER2_type 1 1417 -1001 447 19 0 0 chr11 29990696 29990748 -120792805 + (TA)n Simple_repeat Simple_repeat 2 53 0 2067 98 7 0 chr11 29990747 29991045 -120792508 - AluSg SINE Alu 0 303 4 13526 143 21 36 chr11 29991045 29992102 -120791451 + Tigger1 DNA MER2_type 1714 2418 0 619 248 84 36 chr11 29992278 29992593 -120790960 + MLT1H1 LTR MaLR 161 555 0 313 195 98 12 chr11 29992595 29992677 -120790876 + MIR SINE MIR 87 175 -87 264 336 25 0 chr11 29992841 29992960 -120790593 + MARNA DNA Mariner 448 569 -17 23 0 0 0 chr11 29993348 29993371 -120790182 + AT_rich Low_complexity Low_complexity 1 23 0 2393 162 52 0 chr11 29994601 29995008 -120788545 + MSTC LTR MaLR 1 428 0 312 294 123 57 chr11 29995071 29995282 -120788271 + MLT1K LTR MaLR 141 365 -223 24 0 0 0 chr11 29995482 29995506 -120788047 + AT_rich Low_complexity Low_complexity 1 24 0 1977 124 32 0 chr11 29998153 29998436 -120785117 + AluSx SINE Alu 7 298 -14 440 298 112 27 chr11 30000381 30000569 -120782984 + MIR SINE MIR 23 226 -36 242 287 157 35 chr11 30000723 30000838 -120782715 + L2 LINE L2 3144 3272 0 221 288 15 0 chr11 30000846 30000912 -120782641 + L3 LINE CR1 1254 1320 -257 252 325 44 26 chr11 30000972 30001086 -120782467 - MIR SINE MIR -93 169 54 381 255 215 7 chr11 30001953 30002102 -120781451 + MER5A DNA MER1_type 10 189 0 2139 103 0 10 chr11 30002263 30002553 -120781000 + AluSx SINE Alu 1 287 -25 27 0 0 0 chr11 30002560 30002587 -120780966 + AT_rich Low_complexity Low_complexity 1 27 0 424 313 207 32 chr11 30002953 30003359 -120780194 - MLT1H LTR MaLR 0 549 73 2178 74 46 0 chr11 30004310 30004595 -120778958 + AluY SINE Alu 1 298 -13 200 360 51 63 chr11 30005053 30005228 -120778325 + L3 LINE CR1 1401 1573 -4 1486 305 64 39 chr11 30005386 30006109 -120777444 + L2 LINE L2 2313 3047 -266 2312 250 51 55 chr11 30006281 30007162 -120776391 - L1ME2 LINE L1 -9 6224 5352 3372 81 2 9 chr11 30007162 30007609 -120775944 + MLT2A1 LTR ERVL 1 444 0 2312 250 51 55 chr11 30007609 30008222 -120775331 - L1ME2 LINE L1 -881 5352 4738 684 224 4 78 chr11 30008233 30008465 -120775088 + L1ME LINE L1 5602 5816 -350 677 288 143 21 chr11 30008485 30008954 -120774599 - L1ME2 LINE L1 -1851 4364 3839 * 980 265 134 46 chr11 30008943 30009040 -120774513 - L1ME2 LINE L1 -3379 2836 2749 2043 133 0 7 chr11 30009040 30009349 -120774204 - AluSx SINE Alu -4 308 2 980 265 134 46 chr11 30009349 30010316 -120773237 - L1ME2 LINE L1 -3466 2749 1759 1921 234 33 12 chr11 30010372 30010950 -120772603 - L1MCa LINE L1 -2442 3984 3395 1663 185 33 30 chr11 30010949 30011739 -120771814 - L1MCa LINE L1 -3727 2699 840 * 3708 193 27 60 chr11 30011767 30012616 -120770937 - L1MCa LINE L1 -5580 846 26 318 430 24 0 chr11 30012850 30013057 -120770496 - L1ME2 LINE L1 -6026 370 159 7489 33 0 0 chr11 30013301 30014655 -120768898 - L1PA3 LINE L1 0 6155 4803 28 29 0 0 chr11 30014944 30014979 -120768574 + AT_rich Low_complexity Low_complexity 1 35 0 363 305 89 47 chr11 30015065 30015301 -120768252 + L2 LINE L2 2363 2608 -706 211 342 45 18 chr11 30015689 30015800 -120767753 + L2 LINE L2 2673 2786 -528 336 263 0 0 chr11 30015808 30015888 -120767665 + Tigger5 DNA MER2_type 3 82 -2241 * 1268 164 84 0 chr11 30015876 30016102 -120767451 + Tigger5 DNA MER2_type 2079 2323 0 407 369 42 25 chr11 30016102 30016343 -120767210 + L2 LINE L2 2809 3053 -219 5420 131 38 4 chr11 30017185 30018453 -120765100 - L1PA15 LINE L1 0 6165 4882 416 261 46 23 chr11 30018875 30019005 -120764548 - L2 LINE L2 -1 3312 3180 1192 167 0 78 chr11 30019322 30019628 -120763925 - L1MA4 LINE L1 -16 6284 6003 267 283 58 25 chr11 30019996 30020116 -120763437 - L1ME LINE L1 -485 5636 5513 3641 205 38 11 chr11 30020162 30021170 -120762383 - L1MA10 LINE L1 0 6334 5127 910 171 20 20 chr11 30021174 30021373 -120762180 - L1MA10 LINE L1 -1740 4406 4208 24 0 0 0 chr11 30022878 30022902 -120760651 + AT_rich Low_complexity Low_complexity 1 24 0 2024 259 41 17 chr11 30023198 30023905 -120759648 + L1MC4a LINE L1 6880 7603 -205 889 280 92 38 chr11 30024318 30024764 -120758789 + L1ME3A LINE L1 5695 6164 -6 790 62 0 0 chr11 30024799 30024896 -120758657 - L1PA7 LINE L1 -561 5611 5515 3892 73 2 29 chr11 30024896 30025485 -120758068 + L1PA7 LINE L1 5606 6180 0 21 36 0 0 chr11 30025584 30025612 -120757941 + AT_rich Low_complexity Low_complexity 1 28 0 1699 182 3 0 chr11 30025888 30026185 -120757368 + AluJo SINE Alu 1 298 -14 750 259 80 5 chr11 30028060 30028261 -120755292 - MIR SINE MIR -1 261 46 2146 213 47 29 chr11 30028433 30028944 -120754609 + MLT2B1 LTR ERVL 1 520 0 419 323 78 18 chr11 30029014 30029231 -120754322 - L2 LINE L2 -3 3310 3081 263 295 38 0 chr11 30029278 30029383 -120754170 + L1MC/D LINE L1 5764 5872 -1936 374 330 138 25 chr11 30029656 30029859 -120753694 + L2 LINE L2 2874 3099 -214 508 265 82 71 chr11 30029971 30030239 -120753314 + MLT1J2 LTR MaLR 60 330 -120 22 35 0 0 chr11 30030839 30030868 -120752685 + AT_rich Low_complexity Low_complexity 1 29 0 283 415 37 0 chr11 30031036 30031200 -120752353 - L3 LINE CR1 -399 1178 1009 312 337 51 0 chr11 30031238 30031336 -120752217 + MIR SINE MIR 37 139 -123 241 393 73 10 chr11 30033026 30033232 -120750321 + MIR SINE MIR 12 230 -32 1463 196 28 70 chr11 30033280 30033758 -120749795 + MER39 LTR ERV1 1 707 0 193 278 111 40 chr11 30035309 30035435 -120748118 + MIR SINE MIR 65 199 -63 365 131 16 0 chr11 30035520 30035581 -120747972 - MADE1 DNA Mariner -3 77 16 205 275 165 9 chr11 30035611 30035720 -120747833 + MIR SINE MIR 131 256 -6 281 333 58 7 chr11 30036214 30036352 -120747201 - MIR SINE MIR -27 235 91 3189 301 79 19 chr11 30036537 30037631 -120745922 + L1MEc LINE L1 92 1314 -5082 468 0 0 0 chr11 30037631 30037683 -120745870 + (TG)n Simple_repeat Simple_repeat 2 53 0 3189 301 79 19 chr11 30037683 30038198 -120745355 + L1MEc LINE L1 1314 1797 -4599 194 189 0 19 chr11 30039466 30039519 -120744034 + (TATATG)n Simple_repeat Simple_repeat 4 55 0 736 185 104 28 chr11 30039751 30039962 -120743591 + MER33 DNA MER1_type 5 231 -93 277 128 0 0 chr11 30040083 30040122 -120743431 + 5S rRNA rRNA 4 42 -79 1209 216 52 29 chr11 30041269 30041617 -120741936 - MLT1C LTR MaLR -59 331 1 298 301 68 0 chr11 30041617 30041720 -120741833 - MER112 DNA MER1_type -124 136 27 361 308 108 15 chr11 30041727 30041987 -120741566 - L1MC/D LINE L1 -2151 5657 5374 465 208 35 0 chr11 30042029 30042202 -120741351 + (TA)n Simple_repeat Simple_repeat 2 180 0 11041 149 56 39 chr11 30042670 30043035 -120740518 + Tigger2 DNA MER2_type 1 358 -2360 1958 136 0 0 chr11 30043035 30043394 -120740159 + AluSg SINE Alu 1 359 0 11041 149 56 39 chr11 30043394 30045146 -120738407 + Tigger2 DNA MER2_type 358 2154 -564 3238 32 0 5 chr11 30045302 30045704 -120737849 - L1P LINE L1 -1316 4830 4431 * 3386 32 0 0 chr11 30045701 30046101 -120737452 + L1P LINE L1 4036 4435 -1711 431 229 80 96 chr11 30046254 30046442 -120737111 + L2 LINE L2 3126 3310 -3 23 0 0 0 chr11 30047124 30047147 -120736406 + AT_rich Low_complexity Low_complexity 1 23 0 228 86 0 0 chr11 30048246 30048281 -120735272 + (GA)n Simple_repeat Simple_repeat 1 35 0 610 241 127 6 chr11 30048552 30048710 -120734843 + MER45A DNA AcHobo 2 178 0 335 179 0 13 chr11 30048918 30048996 -120734557 + GA-rich Low_complexity Low_complexity 4 80 0 267 152 0 0 chr11 30049539 30049585 -120733968 + (TA)n Simple_repeat Simple_repeat 2 47 0 285 29 0 0 chr11 30050014 30050048 -120733505 + (TA)n Simple_repeat Simple_repeat 2 35 0 21 0 0 0 chr11 30050094 30050115 -120733438 + AT_rich Low_complexity Low_complexity 1 21 0 2342 293 107 23 chr11 30050116 30050337 -120733216 + L1MEc LINE L1 39 240 -6156 4164 195 46 9 chr11 30050337 30051205 -120732348 + MER54A LTR ERVL 2 901 0 2342 293 107 23 chr11 30051205 30052242 -120731311 + L1MEc LINE L1 240 1403 -4993 1020 251 169 31 chr11 30052251 30052668 -120730885 + MLT2B1 LTR ERVL 1 486 -34 399 73 0 0 chr11 30052668 30052723 -120730830 + (CA)n Simple_repeat Simple_repeat 2 56 0 1020 251 169 31 chr11 30052723 30052756 -120730797 + MLT2B1 LTR ERVL 486 513 -7 958 281 74 5 chr11 30052756 30053133 -120730420 + L1MEc LINE L1 1409 1811 -4585 792 275 54 52 chr11 30054479 30054934 -120728619 + MLT1H1 LTR MaLR 5 509 -46 234 254 76 17 chr11 30055131 30055249 -120728304 + LTR37B LTR ERV1 74 198 -270 534 220 104 11 chr11 30055294 30055476 -120728077 + LTR37B LTR ERV1 197 395 -73 2140 151 48 38 chr11 30055639 30056178 -120727375 + MLT2A2 LTR ERVL 1 554 0 363 294 134 53 chr11 30056289 30056683 -120726870 - L1ME4a LINE L1 -203 5918 5493 349 202 0 19 chr11 30056917 30057021 -120726532 + (TA)n Simple_repeat Simple_repeat 1 102 0 238 261 0 0 chr11 30057250 30057296 -120726257 + polypurine Low_complexity Low_complexity 1 46 0 24 85 0 0 chr11 30057456 30057515 -120726038 + AT_rich Low_complexity Low_complexity 1 59 0 2642 78 14 0 chr11 30057600 30057961 -120725592 - L1PA13 LINE L1 -7 6156 5791 22 0 0 0 chr11 30058073 30058095 -120725458 + AT_rich Low_complexity Low_complexity 1 22 0 206 298 0 18 chr11 30060238 30060295 -120723258 - MIR SINE MIR -205 57 2 519 325 36 16 chr11 30060357 30060606 -120722947 + L1ME LINE L1 5539 5792 -329 2210 94 0 3 chr11 30060659 30060946 -120722607 + AluSq SINE Alu 1 286 -27 189 74 0 0 chr11 30060946 30060973 -120722580 + (CATA)n Simple_repeat Simple_repeat 2 28 0 1360 154 38 8 chr11 30061104 30061370 -120722183 + L1MA9 LINE L1 6001 6274 -38 25 31 0 0 chr11 30061702 30061734 -120721819 + AT_rich Low_complexity Low_complexity 1 32 0 207 236 36 0 chr11 30062646 30062701 -120720852 + MIR SINE MIR 88 144 -64 183 61 30 30 chr11 30062873 30062906 -120720647 - MER5A DNA MER1_type -116 73 41 21 0 0 0 chr11 30063767 30063788 -120719765 + AT_rich Low_complexity Low_complexity 1 21 0 277 198 272 0 chr11 30064305 30064386 -120719167 + L2 LINE L2 3210 3312 -1 185 348 0 11 chr11 30065220 30065312 -120718241 - MIR SINE MIR 0 262 172 378 338 104 7 chr11 30065687 30065841 -120717712 - MIR SINE MIR -74 188 20 265 336 44 48 chr11 30065860 30066110 -120717443 - L3 LINE CR1 -34 1543 1295 339 130 0 0 chr11 30066127 30066181 -120717372 + (T)n Simple_repeat Simple_repeat 1 54 0 306 359 16 26 chr11 30066382 30066574 -120716979 + MLT1K LTR MaLR 125 314 -274 404 357 115 50 chr11 30066943 30067671 -120715882 - L3 LINE CR1 -572 1005 230 21 0 0 0 chr11 30067996 30068017 -120715536 + AT_rich Low_complexity Low_complexity 1 21 0 495 0 0 0 chr11 30068598 30068653 -120714900 + (TA)n Simple_repeat Simple_repeat 2 56 0 568 351 22 30 chr11 30069417 30069821 -120713732 + MLT1K LTR MaLR 188 588 0 1858 161 18 0 chr11 30070143 30070472 -120713081 - L1PB4 LINE L1 0 6156 5822 216 208 42 0 chr11 30070870 30070918 -120712635 + CT-rich Low_complexity Low_complexity 5 54 0 2366 44 0 93 chr11 30071511 30071854 -120711699 + AluY SINE Alu 1 311 0 276 261 170 18 chr11 30072919 30073084 -120710469 - L2 LINE L2 -19 3294 3105 271 385 81 0 chr11 30073179 30073327 -120710226 + L2 LINE L2 3100 3259 -13 955 113 0 0 chr11 30073531 30073655 -120709898 - AluY SINE Alu -187 124 1 413 233 9 60 chr11 30073860 30073976 -120709577 + MER81 DNA DNA 3 112 -2 424 279 88 19 chr11 30074842 30075057 -120708496 - L1ME4a LINE L1 -266 5855 5626 1039 271 81 48 chr11 30076055 30076261 -120707292 - MLT1H1 LTR MaLR -82 473 275 2386 118 22 3 chr11 30076261 30076618 -120706935 + THE1B LTR MaLR 1 364 0 1039 271 81 48 chr11 30076618 30076869 -120706684 - MLT1H1 LTR MaLR -280 275 1 273 348 19 62 chr11 30077060 30077221 -120706332 + MIR SINE MIR 34 147 -61 705 219 118 92 chr11 30077329 30077644 -120705909 - MER46C DNA MER2_type -15 323 1 391 314 66 7 chr11 30077839 30077976 -120705577 + MIR SINE MIR 108 252 -10 234 176 0 0 chr11 30077981 30078032 -120705521 + CT-rich Low_complexity Low_complexity 1 51 0 231 238 111 40 chr11 30078243 30078369 -120705184 - L2 LINE L2 -189 3083 2949 2097 107 0 7 chr11 30078783 30079081 -120704472 - AluSq SINE Alu -17 296 1 954 137 17 57 chr11 30079869 30080044 -120703509 + Tigger2a DNA MER2_type 4 171 -263 2046 171 72 0 chr11 30080053 30080440 -120703113 - Tigger2 DNA MER2_type -1 2717 2303 1664 89 69 82 chr11 30080463 30080766 -120702787 - AluY SINE Alu -10 301 3 805 231 5 41 chr11 30080798 30080993 -120702560 + AluJo SINE Alu 1 188 -124 211 305 8 34 chr11 30081105 30081223 -120702330 + A-rich Low_complexity Low_complexity 3 117 0 1985 122 28 0 chr11 30082273 30082587 -120700966 - AluSq SINE Alu 0 322 1 366 336 15 0 chr11 30082624 30082755 -120700798 - MIR SINE MIR -56 206 74 280 340 41 37 chr11 30083405 30083673 -120699880 - ERVL LTR ERVL -4342 1422 1154 379 304 0 16 chr11 30084905 30085030 -120698523 + MIR SINE MIR 84 206 -56 255 291 76 0 chr11 30085298 30085377 -120698176 + L2 LINE L2 3188 3272 0 2316 69 3 0 chr11 30085984 30086290 -120697263 - L1PA7 LINE L1 -1 6153 5847 3630 65 7 0 chr11 30086291 30086754 -120696799 + L1PA7 LINE L1 5365 5830 -324 329 401 84 12 chr11 30086793 30087127 -120696426 + L3 LINE CR1 5 362 -1215 29 0 0 0 chr11 30087753 30087782 -120695771 + AT_rich Low_complexity Low_complexity 1 29 0 427 194 0 32 chr11 30088438 30088531 -120695022 + MLT2B2 LTR ERVL 386 475 -40 375 408 73 35 chr11 30088643 30088984 -120694569 - L2 LINE L2 -341 2973 2620 281 26 0 26 chr11 30089132 30089171 -120694382 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 215 293 0 17 chr11 30091850 30091908 -120691645 + MIR SINE MIR 101 157 -105 564 289 45 20 chr11 30091915 30092116 -120691437 - MIR SINE MIR 0 262 57 277 337 122 0 chr11 30092117 30092215 -120691338 + MIR SINE MIR 153 262 0 332 177 114 0 chr11 30092854 30092933 -120690620 - LTR33 LTR ERVL 0 521 434 1088 296 61 58 chr11 30092953 30093415 -120690138 - LTR33 LTR ERVL -58 463 1 247 302 52 0 chr11 30093590 30093706 -120689847 - LTR67 LTR ERVL -2 555 434 531 315 44 1 chr11 30094410 30094591 -120688962 - MIR SINE MIR -41 221 36 490 157 0 0 chr11 30095660 30095743 -120687810 - L1MC3 LINE L1 -1 7784 7702 354 23 0 0 chr11 30096592 30096635 -120686918 + (TG)n Simple_repeat Simple_repeat 2 44 0 309 356 46 36 chr11 30096663 30096857 -120686696 - MIR SINE MIR -38 224 29 1968 128 0 20 chr11 30099486 30099791 -120683762 - AluSg SINE Alu -11 299 1 23 33 0 0 chr11 30100061 30100091 -120683462 + GC_rich Low_complexity Low_complexity 1 30 0 608 268 73 29 chr11 30100743 30100989 -120682564 - MLT1L LTR MaLR -2 613 357 245 186 0 43 chr11 30101972 30102042 -120681511 + T-rich Low_complexity Low_complexity 3 69 0 327 256 122 16 chr11 30102057 30102311 -120681242 + L1M4 LINE L1 2978 3258 -2888 186 189 0 0 chr11 30103289 30103326 -120680227 + (AACTG)n Simple_repeat Simple_repeat 4 40 0 379 319 25 6 chr11 30103724 30103884 -120679669 - MIR SINE MIR -27 235 73 694 262 45 41 chr11 30104420 30104641 -120678912 + MIR SINE MIR 31 252 -10 21 0 0 0 chr11 30106892 30106913 -120676640 + AT_rich Low_complexity Low_complexity 1 21 0 395 246 93 41 chr11 30106977 30107228 -120676325 - MLT1J LTR MaLR -233 217 1 367 305 48 18 chr11 30107254 30107421 -120676132 + L2 LINE L2 3115 3286 -27 1682 222 31 0 chr11 30107753 30108226 -120675327 - L1ME1 LINE L1 -5 6161 5539 2034 102 25 0 chr11 30108233 30108539 -120675014 - AluY SINE Alu 0 313 1 186 381 82 15 chr11 30108553 30108687 -120674866 + L2 LINE L2 2942 3084 -188 455 335 27 11 chr11 30109609 30109872 -120673681 - L1ME LINE L1 -359 5762 5496 748 297 13 17 chr11 30110772 30111008 -120672545 - MIR SINE MIR -3 259 25 323 167 19 0 chr11 30111149 30111203 -120672350 - MER45A DNA AcHobo 0 178 124 * 1356 295 64 102 chr11 30111199 30111856 -120671697 - MER45C DNA AcHobo -321 632 1 210 332 102 37 chr11 30111952 30112196 -120671357 + MIR SINE MIR 2 261 -1 242 149 0 45 chr11 30112319 30112386 -120671167 + L1MC4 LINE L1 6640 6703 -1339 231 221 0 53 chr11 30112420 30112515 -120671038 - L1MC4 LINE L1 -1339 6703 6614 278 167 17 0 chr11 30112516 30112576 -120670977 + (TA)n Simple_repeat Simple_repeat 1 61 0 521 325 95 9 chr11 30112576 30112807 -120670746 - MIR SINE MIR -11 251 1 239 261 140 70 chr11 30112816 30112973 -120670580 - MER5B DNA MER1_type -7 171 4 197 270 99 54 chr11 30112974 30113085 -120670468 + MER5B DNA MER1_type 15 130 -48 52 64 0 0 chr11 30113863 30113957 -120669596 + AT_rich Low_complexity Low_complexity 1 94 0 372 351 91 13 chr11 30114172 30114403 -120669150 + MIR SINE MIR 14 262 0 21 36 0 0 chr11 30117780 30117808 -120665745 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr11 30117908 30117931 -120665622 + AT_rich Low_complexity Low_complexity 1 23 0 214 369 94 28 chr11 30118207 30118559 -120664994 - L2 LINE L2 -694 2620 2246 307 313 49 49 chr11 30119101 30119245 -120664308 - MIR SINE MIR -70 192 49 180 200 50 0 chr11 30119328 30119368 -120664185 + MIR3 SINE MIR 165 206 -2 339 188 14 43 chr11 30120205 30120274 -120663279 + MER5A DNA MER1_type 48 114 -75 235 372 58 13 chr11 30120266 30120422 -120663131 + MIR SINE MIR 88 250 -12 * 1633 170 21 25 chr11 30120493 30120799 -120662754 + AluJb SINE Alu 1 305 0 210 208 0 0 chr11 30121490 30121543 -120662010 + (ATG)n Simple_repeat Simple_repeat 2 54 0 701 269 143 27 chr11 30121576 30121877 -120661676 + L2 LINE L2 2180 2515 -799 236 368 60 26 chr11 30122263 30122380 -120661173 - L2 LINE L2 -13 3259 3139 241 175 193 0 chr11 30123065 30123122 -120660431 - L2 LINE L2 -5 3308 3241 199 383 12 0 chr11 30123685 30123766 -120659787 - L2 LINE L2 0 3272 3191 330 363 83 21 chr11 30124990 30125230 -120658323 - MIR SINE MIR 0 262 8 286 342 100 0 chr11 30126167 30126287 -120657266 + L2 LINE L2 3141 3272 0 252 273 138 39 chr11 30126359 30126714 -120656839 - L1ME4a LINE L1 -3 6118 5729 723 127 83 104 chr11 30127589 30127827 -120655726 + AluJb SINE Alu 2 312 0 2571 206 34 8 chr11 30128220 30128723 -120654830 + MLT2B3 LTR ERVL 10 473 -47 313 167 12 12 chr11 30128724 30128808 -120654745 + (TCTA)n Simple_repeat Simple_repeat 4 87 0 273 311 33 11 chr11 30129158 30129248 -120654305 + L2 LINE L2 3215 3306 -7 218 254 0 0 chr11 30130107 30130162 -120653391 + (CACCAT)n Simple_repeat Simple_repeat 5 59 0 3143 169 11 2 chr11 30130298 30130855 -120652698 + L1MA8 LINE L1 5547 6108 -183 192 97 0 0 chr11 30130968 30130999 -120652554 + (CA)n Simple_repeat Simple_repeat 2 32 0 21 0 0 0 chr11 30131555 30131576 -120651977 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr11 30131707 30131728 -120651825 + AT_rich Low_complexity Low_complexity 1 21 0 824 134 21 14 chr11 30133498 30133640 -120649913 - MER4D LTR ERV1 0 903 761 3710 187 7 22 chr11 30133724 30134453 -120649100 - MER4D LTR ERV1 -179 724 7 320 388 27 27 chr11 30134546 30134770 -120648783 - L2 LINE L2 -243 3070 2847 387 246 76 17 chr11 30134775 30134893 -120648660 - MER94 DNA DNA -6 128 4 1030 333 134 19 chr11 30135547 30136172 -120647381 - L2 LINE L2 -509 2805 2109 246 287 41 107 chr11 30136268 30136390 -120647163 + MLT1K LTR MaLR 171 284 -304 1938 133 42 48 chr11 30136528 30136905 -120646648 - THE1C LTR MaLR 0 375 1 477 264 135 0 chr11 30136906 30137069 -120646484 + L2 LINE L2 3126 3310 -3 410 232 60 13 chr11 30139130 30139281 -120644272 + MER103 DNA DNA 9 166 0 180 321 0 18 chr11 30139577 30139633 -120643920 + L2 LINE L2 2980 3034 -238 379 278 80 46 chr11 30139637 30139788 -120643765 - MIR3 SINE MIR -3 205 50 588 350 71 43 chr11 30140603 30141140 -120642413 + L2 LINE L2 2245 2796 -518 2058 216 94 20 chr11 30141465 30141975 -120641578 - MER77 LTR ERV1 -9 596 49 302 367 50 0 chr11 30141995 30142115 -120641438 + L2 LINE L2 3146 3271 -1 3407 98 15 26 chr11 30142614 30143156 -120640397 - L1PA8A LINE L1 -1 6130 5595 294 286 0 0 chr11 30143161 30143266 -120640287 + C-rich Low_complexity Low_complexity 1 105 0 571 279 89 0 chr11 30143444 30143634 -120639919 - MER63A DNA MER1_type -3 207 1 1938 97 54 0 chr11 30144202 30144461 -120639092 + AluSg SINE Alu 20 292 -18 4326 187 20 25 chr11 30144971 30145866 -120637687 + L1P LINE L1 4202 5093 -1053 2052 138 51 25 chr11 30145866 30146221 -120637332 - THE1B LTR MaLR 0 364 1 4326 187 20 25 chr11 30146221 30146314 -120637239 + L1P LINE L1 5093 5185 -961 216 67 0 0 chr11 30146747 30146777 -120636776 + (CA)n Simple_repeat Simple_repeat 1 30 0 1505 188 4 4 chr11 30148020 30148286 -120635267 - AluSx SINE Alu -46 266 1 409 212 34 24 chr11 30149468 30149589 -120633964 - AluS SINE Alu -208 95 1 3409 190 24 5 chr11 30149591 30150229 -120633324 - THE1B-int LTR MaLR -304 1347 698 309 321 52 72 chr11 30150815 30151105 -120632448 - L2 LINE L2 -765 2549 2266 699 43 0 43 chr11 30153398 30153492 -120630061 + LTR13 LTR ERVK 1 90 -917 874 289 79 19 chr11 30153818 30154234 -120629319 - Tigger8 DNA MER2_type -187 479 39 934 165 41 16 chr11 30155151 30155345 -120628208 + L1MA9 LINE L1 5828 6026 -286 7101 111 16 6 chr11 30155626 30157290 -120626263 - L1PA8A LINE L1 -220 5911 4239 6665 209 23 35 chr11 30157391 30159215 -120624338 - L1P4 LINE L1 -727 5438 3612 2052 173 84 0 chr11 30159840 30160233 -120623320 + MSTB LTR MaLR 1 426 0 224 268 187 43 chr11 30160874 30161109 -120622444 + L2 LINE L2 2487 2755 -559 200 347 32 0 chr11 30161218 30161313 -120622240 + L2 LINE L2 2180 2277 -1037 1094 278 88 25 chr11 30161410 30161981 -120621572 + L2 LINE L2 2710 3313 0 223 342 34 26 chr11 30161998 30162115 -120621438 + L2 LINE L2 2870 2987 -285 336 263 138 67 chr11 30163056 30163280 -120620273 + L1M4 LINE L1 4017 4256 -1890 577 202 23 52 chr11 30163427 30163600 -120619953 - L1ME LINE L1 -654 5788 5621 294 344 54 40 chr11 30163993 30164342 -120619211 - ERVL LTR ERVL -5070 694 341 482 258 54 16 chr11 30164534 30164720 -120618833 + MLT1F1 LTR MaLR 1 193 -374 1999 288 95 48 chr11 30164756 30165831 -120617722 - L1MCc LINE L1 -5134 1289 165 27 29 0 0 chr11 30165831 30165865 -120617688 + AT_rich Low_complexity Low_complexity 1 34 0 246 352 11 0 chr11 30165955 30166046 -120617507 - L3 LINE CR1 -24 1553 1462 7211 198 48 29 chr11 30166049 30167231 -120616322 - L1MC3 LINE L1 -2 7783 6556 291 54 0 0 chr11 30167231 30167268 -120616285 + (TA)n Simple_repeat Simple_repeat 1 37 0 7211 198 48 29 chr11 30167268 30167830 -120615723 - L1MC3 LINE L1 -1229 6556 6006 544 207 115 42 chr11 30167848 30168065 -120615488 - L1ME LINE L1 -2097 4329 4097 2456 252 42 19 chr11 30168071 30169309 -120614244 - L1MCa LINE L1 -3113 3313 2049 25 0 0 0 chr11 30169393 30169418 -120614135 + AT_rich Low_complexity Low_complexity 1 25 0 961 211 144 20 chr11 30169418 30169699 -120613854 - MLT1A1 LTR MaLR -48 326 1 468 317 34 6 chr11 30169701 30169879 -120613674 - MIR SINE MIR -62 146 5 1865 148 16 0 chr11 30169896 30170201 -120613352 - Tigger2 DNA MER2_type 0 2718 2409 1393 13 0 0 chr11 30170215 30170374 -120613179 - L1HS LINE L1 0 6155 5997 * 4669 15 2 0 chr11 30170373 30170910 -120612643 + L1HS LINE L1 5480 6017 -138 707 295 40 0 chr11 30171050 30171250 -120612303 + MER58A DNA MER1_type 2 209 -15 660 193 75 37 chr11 30171270 30171457 -120612096 + MLT1F LTR MaLR 338 531 -11 453 278 153 91 chr11 30171598 30172214 -120611339 - LTR50 LTR ERVL 0 795 142 2155 126 0 10 chr11 30172214 30172524 -120611029 - AluSq SINE Alu -6 307 1 752 211 0 7 chr11 30172817 30172964 -120610589 + FRAM SINE Alu 28 173 -3 4572 170 17 14 chr11 30173423 30175071 -120608482 + L1MA8 LINE L1 4461 6260 -31 29 60 0 0 chr11 30175122 30175172 -120608381 + AT_rich Low_complexity Low_complexity 1 50 0 955 105 0 0 chr11 30175252 30175385 -120608168 - THE1C LTR MaLR -1 374 242 2348 146 15 33 chr11 30175385 30175966 -120607587 - L1MA8 LINE L1 -118 6173 5455 1242 128 20 0 chr11 30175970 30176165 -120607388 - THE1C LTR MaLR -176 199 1 213 385 33 0 chr11 30176165 30176256 -120607297 - L2 LINE L2 -45 3227 3134 637 176 118 6 chr11 30176288 30176458 -120607095 + MER53 DNA DNA 1 189 0 548 340 43 13 chr11 30177157 30177389 -120606164 - MIR SINE MIR -14 248 10 496 279 221 0 chr11 30177425 30177597 -120605956 - MIR SINE MIR -41 221 12 272 297 81 36 chr11 30177606 30177717 -120605836 - MIR SINE MIR -57 151 36 347 318 34 0 chr11 30178182 30178330 -120605223 - MER103 DNA DNA -3 163 11 299 244 26 0 chr11 30178463 30178541 -120605012 - MER5A DNA MER1_type -83 106 27 224 268 103 21 chr11 30178960 30179057 -120604496 - MIR SINE MIR -74 188 84 2616 233 52 10 chr11 30179416 30180210 -120603343 + L1MD2 LINE L1 4034 4860 -1286 3161 201 46 48 chr11 30180224 30181094 -120602459 - L1MB7 LINE L1 0 6184 5317 246 32 0 0 chr11 30181133 30181164 -120602389 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 7829 16 0 0 chr11 30181180 30182745 -120600808 - L1PA2 LINE L1 0 6155 4591 6451 31 0 0 chr11 30182745 30183524 -120600029 + L1P LINE L1 1786 2564 -3582 1218 215 56 20 chr11 30183523 30183914 -120599639 - L1MB7 LINE L1 -815 5331 4927 * 4313 224 48 21 chr11 30183951 30185378 -120598175 + L1MD2 LINE L1 4893 6359 0 508 339 16 5 chr11 30185551 30185737 -120597816 + L2 LINE L2 2658 2845 -469 1421 285 71 32 chr11 30185755 30186279 -120597274 - MLT1E LTR MaLR -2 591 36 249 243 57 14 chr11 30186662 30186732 -120596821 - MIR SINE MIR -111 151 79 325 329 19 7 chr11 30187016 30187121 -120596432 + GA-rich Low_complexity Low_complexity 2 111 -47 1728 150 32 42 chr11 30187121 30187500 -120596053 + THE1C LTR MaLR 1 375 0 325 329 19 7 chr11 30187500 30187549 -120596004 + GA-rich Low_complexity Low_complexity 111 158 0 377 295 50 14 chr11 30187765 30187904 -120595649 - MIR SINE MIR -56 206 63 489 314 40 45 chr11 30189001 30189224 -120594329 + MIR SINE MIR 21 242 -20 654 251 66 43 chr11 30189602 30189813 -120593740 + MER20 DNA MER1_type 4 219 0 303 291 73 0 chr11 30189918 30190028 -120593525 + L3b LINE CR1 1267 1384 -199 746 118 83 104 chr11 30190321 30190559 -120592994 - AluJb SINE Alu 0 312 2 267 290 130 31 chr11 30191435 30191790 -120591763 + L1ME4a LINE L1 5729 6118 -3 302 333 100 0 chr11 30191862 30191982 -120591571 - L2 LINE L2 0 3272 3141 347 363 83 21 chr11 30192919 30193159 -120590394 + MIR SINE MIR 8 262 0 199 383 12 0 chr11 30194383 30194464 -120589089 + L2 LINE L2 3191 3272 0 242 175 193 0 chr11 30195025 30195082 -120588471 + L2 LINE L2 3241 3308 -5 239 368 60 26 chr11 30195767 30195884 -120587669 + L2 LINE L2 3139 3259 -13 713 269 143 27 chr11 30196270 30196571 -120586982 - L2 LINE L2 -799 2515 2180 210 208 0 0 chr11 30196604 30196657 -120586896 + (CAT)n Simple_repeat Simple_repeat 2 54 0 2166 154 30 43 chr11 30197228 30197639 -120585914 + L1MA9 LINE L1 5858 6264 -48 1889 198 3 0 chr11 30197639 30197982 -120585571 - MER7A DNA MER2_type 0 346 5 2166 154 30 43 chr11 30197982 30198031 -120585522 + L1MA9 LINE L1 6264 6312 0 21 0 0 0 chr11 30199135 30199156 -120584397 + AT_rich Low_complexity Low_complexity 1 21 0 197 309 73 0 chr11 30199557 30199612 -120583941 - L2 LINE L2 -48 3224 3166 6341 31 0 0 chr11 30200040 30200789 -120582764 - L1PA4 LINE L1 -6 6149 5401 5268 29 2 0 chr11 30200786 30201413 -120582140 + L1P LINE L1 3587 4214 -1932 * 289 359 47 9 chr11 30201707 30201813 -120581740 - L2 LINE L2 -9 3304 3195 642 61 0 0 chr11 30201935 30202017 -120581536 - L1PA5 LINE L1 -163 5991 5910 266 73 0 0 chr11 30202012 30202053 -120581500 + L1PA6 LINE L1 6114 6154 0 * 23 68 0 0 chr11 30202068 30202112 -120581441 + AT_rich Low_complexity Low_complexity 1 44 0 252 0 0 0 chr11 30202544 30202572 -120580981 + (TG)n Simple_repeat Simple_repeat 2 29 0 332 354 31 0 chr11 30202765 30202895 -120580658 - MER94 DNA DNA 0 134 1 397 267 35 43 chr11 30203306 30203422 -120580131 + MIR SINE MIR 35 149 -59 229 349 0 0 chr11 30203965 30204048 -120579505 - MIR SINE MIR -109 153 71 257 382 14 14 chr11 30204556 30204700 -120578853 + MIR3 SINE MIR 65 208 0 298 355 95 12 chr11 30205051 30205293 -120578260 - MLT1K LTR MaLR -166 422 161 480 251 153 18 chr11 30205417 30205580 -120577973 + L2 LINE L2 3108 3292 -21 206 333 107 38 chr11 30205582 30205741 -120577812 - MIR SINE MIR -86 176 7 181 295 27 87 chr11 30205772 30205921 -120577632 + MIR SINE MIR 66 205 -57 180 206 0 0 chr11 30208024 30208058 -120575495 + L2 LINE L2 3183 3216 -56 961 71 0 0 chr11 30209950 30210077 -120573476 + AluY SINE Alu 185 311 0 232 176 231 33 chr11 30210433 30210524 -120573029 + MIR SINE MIR 98 206 -56 294 312 128 0 chr11 30211001 30211142 -120572411 + MIR SINE MIR 46 204 -58 225 154 0 0 chr11 30211142 30211181 -120572372 + (CA)n Simple_repeat Simple_repeat 1 39 0 2198 126 0 3 chr11 30211974 30212284 -120571269 - AluSq SINE Alu -4 309 1 359 290 37 37 chr11 30212380 30212542 -120571011 + MIR SINE MIR 47 208 -54 188 293 60 43 chr11 30212983 30213099 -120570454 + L2 LINE L2 2925 3042 -230 406 285 38 19 chr11 30213514 30213672 -120569881 + MLT1J LTR MaLR 313 473 -38 393 369 124 9 chr11 30213954 30214285 -120569268 + L2 LINE L2 2945 3313 0 242 116 23 0 chr11 30214285 30214328 -120569225 + GA-rich Low_complexity Low_complexity 3 46 0 1512 278 129 30 chr11 30214978 30215482 -120568071 + L2 LINE L2 1958 2410 -904 13553 133 32 39 chr11 30215482 30215818 -120567735 + Tigger1 DNA MER2_type 2 339 -2079 207 0 0 0 chr11 30215818 30215841 -120567712 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 13553 133 32 39 chr11 30215841 30217305 -120566248 + Tigger1 DNA MER2_type 339 1783 -635 2032 138 3 0 chr11 30217305 30217602 -120565951 - AluSx SINE Alu -12 300 3 13553 133 32 39 chr11 30217602 30218234 -120565319 + Tigger1 DNA MER2_type 1783 2418 0 1512 278 129 30 chr11 30218234 30218402 -120565151 + L2 LINE L2 2410 2697 -617 995 262 88 94 chr11 30218460 30218588 -120564965 + L2 LINE L2 2579 2706 -607 786 232 6 17 chr11 30218588 30218765 -120564788 - FAM SINE Alu 0 175 1 995 262 88 94 chr11 30218765 30219382 -120564171 + L2 LINE L2 2706 3311 -2 3442 206 68 28 chr11 30219580 30220397 -120563156 - MER21B LTR ERV1 -1 862 13 21 57 0 0 chr11 30220477 30220512 -120563041 + AT_rich Low_complexity Low_complexity 1 35 0 703 189 16 0 chr11 30220591 30220718 -120562835 + AluJo SINE Alu 1 129 -183 239 67 50 17 chr11 30220720 30220780 -120562773 + (TA)n Simple_repeat Simple_repeat 2 63 0 974 221 0 0 chr11 30220784 30220965 -120562588 + AluJo SINE Alu 132 312 0 360 307 126 12 chr11 30220965 30221219 -120562334 + L1ME LINE L1 4407 4689 -1457 327 292 153 14 chr11 30221649 30221865 -120561688 + L1ME LINE L1 5260 5505 -657 658 349 84 8 chr11 30222817 30223198 -120560355 - L2 LINE L2 0 3313 2904 256 278 21 21 chr11 30223328 30223425 -120560128 - L2 LINE L2 -420 2894 2798 21 0 0 0 chr11 30224420 30224441 -120559112 + AT_rich Low_complexity Low_complexity 1 21 0 481 308 54 58 chr11 30224910 30225332 -120558221 + MLT1I LTR MaLR 1 409 0 405 0 0 0 chr11 30226870 30226915 -120556638 + (TC)n Simple_repeat Simple_repeat 2 46 0 288 0 0 0 chr11 30226914 30226946 -120556607 + (TA)n Simple_repeat Simple_repeat 1 32 0 * 397 370 114 30 chr11 30227173 30227435 -120556118 + L2 LINE L2 2987 3270 -2 323 327 75 38 chr11 30227541 30227859 -120555694 + L2 LINE L2 2921 3250 -63 465 149 64 53 chr11 30228106 30228200 -120555353 - LTR65 LTR ERV1 -274 395 301 187 324 38 48 chr11 30228707 30228812 -120554741 + MIR SINE MIR 41 144 -118 487 222 97 40 chr11 30228828 30229004 -120554549 + MIR SINE MIR 3 188 -74 180 0 0 0 chr11 30229034 30229054 -120554499 + (TA)n Simple_repeat Simple_repeat 1 20 0 * 189 0 0 0 chr11 30229053 30229074 -120554479 + (GA)n Simple_repeat Simple_repeat 2 22 0 240 356 30 20 chr11 30229607 30229708 -120553845 + MIR3 SINE MIR 93 194 -14 1632 145 55 3 chr11 30229789 30230079 -120553474 - MER7A DNA MER2_type -42 304 2 243 0 0 0 chr11 30230372 30230399 -120553154 + (TAAA)n Simple_repeat Simple_repeat 4 30 0 306 317 25 8 chr11 30230986 30231106 -120552447 + MIR SINE MIR 101 222 -40 362 274 33 24 chr11 30232198 30232339 -120551214 - MIR SINE MIR -62 146 10 195 298 18 18 chr11 30232482 30232539 -120551014 - L2 LINE L2 -18 3295 3239 244 385 19 19 chr11 30234394 30234498 -120549055 + L2 LINE L2 3128 3231 -41 1881 169 0 3 chr11 30234948 30235279 -120548274 + L1MA7 LINE L1 5460 5789 -502 21 0 0 0 chr11 30235279 30235300 -120548253 + AT_rich Low_complexity Low_complexity 1 21 0 2098 173 60 31 chr11 30235408 30235895 -120547658 + L1MA7 LINE L1 5787 6287 -4 1212 190 0 0 chr11 30235899 30236094 -120547459 + AluSx SINE Alu 1 195 -117 310 345 59 8 chr11 30236334 30236453 -120547100 - MIR SINE MIR -115 147 23 2350 97 0 0 chr11 30237678 30237976 -120545577 - AluSg SINE Alu -12 298 1 290 122 27 135 chr11 30238120 30238194 -120545359 - MER116 DNA Mariner -10 70 5 279 0 0 0 chr11 30239221 30239252 -120544301 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 435 328 166 39 chr11 30239278 30239773 -120543780 - L2 LINE L2 -61 3252 2660 2480 54 0 3 chr11 30239773 30240069 -120543484 + AluY SINE Alu 1 295 -16 435 328 166 39 chr11 30240069 30240152 -120543401 - L2 LINE L2 -653 2660 2589 835 243 21 21 chr11 30242066 30242255 -120541298 - MER5A DNA MER1_type 0 189 1 2008 137 0 0 chr11 30245604 30245888 -120537665 - AluSx SINE Alu -28 284 1 1410 199 16 58 chr11 30247129 30247577 -120535976 - MER67D LTR ERV1 -4 510 3 337 313 134 34 chr11 30247834 30248013 -120535540 + MIR SINE MIR 54 250 -12 663 283 40 6 chr11 30249389 30249566 -120533987 + MIR SINE MIR 24 206 -56 517 146 39 10 chr11 30249959 30250062 -120533491 + MLT2B1 LTR ERVL 1 106 -414 375 191 9 19 chr11 30250066 30250171 -120533382 + (TA)n Simple_repeat Simple_repeat 2 105 0 204 40 0 0 chr11 30250171 30250196 -120533357 + (GA)n Simple_repeat Simple_repeat 2 26 0 330 148 0 0 chr11 30250200 30250254 -120533299 + MLT2B1 LTR ERVL 467 520 0 2972 109 12 0 chr11 30250628 30251051 -120532502 - MSTA LTR MaLR 0 428 1 2574 122 0 11 chr11 30251616 30251984 -120531569 - THE1B LTR MaLR 0 364 1 1481 193 15 4 chr11 30253376 30253641 -120529912 - MLT1A1 LTR MaLR 0 365 98 273 29 0 0 chr11 30253852 30253886 -120529667 + (TA)n Simple_repeat Simple_repeat 2 35 0 384 331 39 8 chr11 30254263 30254393 -120529160 - MIR SINE MIR -97 165 32 184 304 0 0 chr11 30254912 30254958 -120528595 + MIR SINE MIR 74 119 -89 410 286 6 10 chr11 30255408 30255539 -120528014 - MIR SINE MIR -63 145 22 314 346 0 10 chr11 30256269 30256370 -120527183 - MIR SINE MIR -6 256 157 515 311 97 15 chr11 30256406 30256612 -120526941 - MIR SINE MIR -14 248 26 180 0 0 0 chr11 30256731 30256751 -120526802 + (TA)n Simple_repeat Simple_repeat 2 21 0 1840 159 121 21 chr11 30256890 30257279 -120526274 + MSTA LTR MaLR 1 428 0 427 324 34 21 chr11 30257325 30257563 -120525990 - L1ME LINE L1 -369 5752 5512 623 195 8 0 chr11 30257571 30257689 -120525864 + MLT1A1 LTR MaLR 247 365 0 243 287 106 11 chr11 30258251 30258345 -120525208 - MER103 DNA DNA -57 109 7 1536 120 28 0 chr11 30258680 30258930 -120524623 + L1MA8 LINE L1 6024 6280 -11 849 138 0 36 chr11 30259293 30259431 -120524122 + FLAM_C SINE Alu 1 133 -10 21 82 0 0 chr11 30259575 30259624 -120523929 + AT_rich Low_complexity Low_complexity 1 49 0 332 277 10 40 chr11 30260484 30260585 -120522968 + MIR SINE MIR 71 168 -94 274 302 174 5 chr11 30261403 30261615 -120521938 + L1ME LINE L1 5566 5813 -308 874 312 58 11 chr11 30263129 30263488 -120520065 - L2 LINE L2 0 3313 2938 212 329 91 49 chr11 30264268 30264411 -120519142 - L2 LINE L2 0 3313 3165 365 287 63 21 chr11 30264426 30264569 -120518984 + MIR SINE MIR 104 252 -10 780 203 26 42 chr11 30264610 30264802 -120518751 - MER5A DNA MER1_type 0 189 1 223 382 114 32 chr11 30265092 30265215 -120518338 + L2 LINE L2 3129 3261 -11 802 243 29 0 chr11 30265583 30265756 -120517797 + MER45A DNA AcHobo 1 178 0 189 343 162 0 chr11 30265862 30265967 -120517586 + MIR3 SINE MIR 82 203 -5 309 301 146 50 chr11 30267070 30267269 -120516284 - MIR SINE MIR -41 221 4 16296 53 3 2 chr11 30267674 30270530 -120513023 - L1PA5 LINE L1 -1 6153 3302 485 202 11 0 chr11 30270669 30270763 -120512790 + LTR67 LTR ERVL 449 543 -14 303 295 116 48 chr11 30271385 30271636 -120511917 + L2 LINE L2 2597 2864 -450 34 24 0 0 chr11 30272134 30272175 -120511378 + AT_rich Low_complexity Low_complexity 1 41 0 342 335 40 23 chr11 30272211 30272387 -120511166 - MIR SINE MIR -71 191 13 1104 191 48 75 chr11 30272447 30272819 -120510734 - L1MB8 LINE L1 0 6178 5817 545 275 41 17 chr11 30273096 30273425 -120510128 + MER115 DNA AcHobo 316 692 -1 7212 40 2 10 chr11 30274389 30275291 -120508262 - L1PA5 LINE L1 -1 6153 5259 215 158 0 26 chr11 30275376 30275414 -120508139 - MIR SINE MIR -147 115 79 281 230 109 52 chr11 30276664 30276824 -120506729 - MIR3 SINE MIR -59 149 3 423 232 18 9 chr11 30276907 30277019 -120506534 - MER117 DNA MER1_type -84 113 1 492 227 0 0 chr11 30277373 30277492 -120506061 + GA-rich Low_complexity Low_complexity 1 119 0 315 303 103 50 chr11 30277500 30277761 -120505792 + L2 LINE L2 3038 3312 -1 198 353 86 17 chr11 30278301 30278417 -120505136 + MIR SINE MIR 20 143 -119 28 0 0 0 chr11 30279852 30279880 -120503673 + AT_rich Low_complexity Low_complexity 1 28 0 531 216 0 0 chr11 30280853 30280955 -120502598 + MER7A DNA MER2_type 2 101 -245 23110 42 1 3 chr11 30280955 30284636 -120498917 - L1PA4 LINE L1 -3 6152 2471 1492 216 37 58 chr11 30284636 30285151 -120498402 - L1M4 LINE L1 -1320 5637 5134 2579 271 93 46 chr11 30285170 30287414 -120496139 - L1M4 LINE L1 -3853 3104 742 375 291 91 17 chr11 30287408 30287583 -120495970 - L1M4 LINE L1 -6670 189 2 * 200 143 65 26 chr11 30287635 30287712 -120495841 + (TA)n Simple_repeat Simple_repeat 1 80 0 24 96 0 0 chr11 30287742 30287815 -120495738 + AT_rich Low_complexity Low_complexity 1 73 0 399 299 87 68 chr11 30287816 30288451 -120495102 - L1MEc LINE L1 -1708 4507 3861 449 208 0 104 chr11 30288691 30288835 -120494718 - L2 LINE L2 -1270 2044 1916 548 315 112 70 chr11 30288871 30289344 -120494209 + L2 LINE L2 2003 2495 -819 474 301 132 25 chr11 30289398 30289793 -120493760 - L1MEc LINE L1 -2887 3328 2892 2404 80 0 0 chr11 30291279 30291590 -120491963 - AluY SINE Alu 0 311 1 4629 32 0 0 chr11 30291604 30292157 -120491396 + L1PA4 LINE L1 5603 6155 0 21 36 0 0 chr11 30292520 30292548 -120491005 + AT_rich Low_complexity Low_complexity 1 28 0 545 261 92 19 chr11 30292588 30292795 -120490758 + MIR SINE MIR 37 258 -4 300 336 18 0 chr11 30293043 30293156 -120490397 - MIR3 SINE MIR -7 201 87 703 211 77 5 chr11 30293223 30293417 -120490136 - L1MC3 LINE L1 -18 7767 7560 1881 259 137 7 chr11 30293510 30294240 -120489313 + L1M4c LINE L1 969 1793 -4591 200 216 0 0 chr11 30294307 30294344 -120489209 + (CATATA)n Simple_repeat Simple_repeat 2 38 0 2161 217 42 6 chr11 30294345 30294848 -120488705 + L1MB7 LINE L1 5644 6164 -20 1081 230 73 14 chr11 30294917 30295274 -120488279 + L1ME2 LINE L1 5768 6145 -19 26 50 0 0 chr11 30295894 30295934 -120487619 + AT_rich Low_complexity Low_complexity 1 40 0 273 349 46 9 chr11 30295970 30296079 -120487474 - MIR SINE MIR -139 123 11 211 392 7 28 chr11 30296103 30296246 -120487307 - MIR3 SINE MIR -62 146 7 249 305 12 0 chr11 30296723 30296805 -120486748 + MIR SINE MIR 172 254 -8 9213 28 2 0 chr11 30296982 30298848 -120484705 - L1PA4 LINE L1 -3 6152 4285 40 49 0 0 chr11 30299235 30299296 -120484257 + AT_rich Low_complexity Low_complexity 1 61 0 215 110 93 17 chr11 30299408 30299526 -120484027 + (TA)n Simple_repeat Simple_repeat 2 128 0 411 222 11 11 chr11 30299558 30299738 -120483815 + (TA)n Simple_repeat Simple_repeat 1 180 0 483 253 82 0 chr11 30299926 30300096 -120483457 - L1MEc LINE L1 -3641 2574 2391 1843 240 125 15 chr11 30300122 30300642 -120482911 + MLT1E1 LTR MaLR 58 634 -20 313 282 54 54 chr11 30300661 30300902 -120482651 - L1MEc LINE L1 -3816 2399 2183 230 314 117 38 chr11 30300991 30301463 -120482090 - L1MEc LINE L1 -4542 1854 1346 3554 133 11 0 chr11 30301597 30302155 -120481398 - L1PA16 LINE L1 -9 6157 5594 230 272 148 0 chr11 30302410 30302491 -120481062 - L2 LINE L2 0 3313 3221 22 35 0 0 chr11 30302863 30302892 -120480661 + AT_rich Low_complexity Low_complexity 1 29 0 295 282 128 8 chr11 30303101 30303218 -120480335 - MIR SINE MIR -59 203 73 550 191 25 157 chr11 30303306 30303541 -120480012 - L2 LINE L2 0 3313 3110 1973 186 3 19 chr11 30304726 30305097 -120478456 - MLT1A1 LTR MaLR 0 365 1 1477 109 19 0 chr11 30305421 30305632 -120477921 + L1PA10 LINE L1 5938 6152 -16 1204 197 119 44 chr11 30306198 30306559 -120476994 - MER89 LTR ERV1 0 559 172 278 262 24 0 chr11 30306899 30306983 -120476570 + CT-rich Low_complexity Low_complexity 1 86 0 388 302 195 54 chr11 30308928 30309451 -120474102 + L2 LINE L2 2681 3291 -22 824 200 19 12 chr11 30309451 30309611 -120473942 - Tigger3(Golem) DNA MER2_type 0 3029 2869 292 160 0 0 chr11 30309606 30309656 -120473897 - Tigger3(Golem) DNA MER2_type -99 2930 2881 * 367 97 0 97 chr11 30309659 30309731 -120473822 - Tigger3(Golem) DNA MER2_type -96 2933 2869 350 111 0 97 chr11 30309749 30309821 -120473732 - Tigger3(Golem) DNA MER2_type -96 2933 2869 318 200 0 31 chr11 30309816 30309881 -120473672 - Tigger3(Golem) DNA MER2_type -89 2940 2878 * 301 152 25 89 chr11 30309863 30309942 -120473611 - Tigger3(Golem) DNA MER2_type -79 2950 2877 * 345 162 0 86 chr11 30309935 30310073 -120473480 - Tigger3(Golem) DNA MER2_type -75 2954 2868 312 171 0 92 chr11 30310075 30310151 -120473402 - Tigger3(Golem) DNA MER2_type -93 2936 2868 * 391 94 71 82 chr11 30310148 30310233 -120473320 - Tigger3(Golem) DNA MER2_type -77 2952 2869 247 185 93 0 chr11 30310248 30310302 -120473251 - Tigger3(Golem) DNA MER2_type -83 2946 2888 303 189 24 52 chr11 30310302 30310427 -120473126 - Tigger3(Golem) DNA MER2_type -88 2941 2844 278 139 0 0 chr11 30310464 30310507 -120473046 - Tigger3(Golem) DNA MER2_type -107 2922 2880 898 108 89 32 chr11 30310533 30310691 -120472862 - Tigger3(Golem) DNA MER2_type -91 2938 2772 19611 39 6 0 chr11 30310691 30313883 -120469670 + L1PA4 LINE L1 2954 6152 -3 270 206 0 32 chr11 30313901 30313964 -120469589 + L1M4 LINE L1 4810 4870 -1276 1270 195 49 21 chr11 30313971 30314403 -120469150 + L1M4 LINE L1 5104 5555 -619 301 381 44 11 chr11 30314514 30314695 -120468858 - L2 LINE L2 -229 3043 2857 260 75 75 0 chr11 30315382 30315435 -120468118 - LTR66 LTR ERVL -160 450 394 22 88 0 0 chr11 30315449 30315506 -120468047 + AT_rich Low_complexity Low_complexity 1 57 0 342 243 29 0 chr11 30315555 30315695 -120467858 + (TA)n Simple_repeat Simple_repeat 2 145 0 187 343 0 29 chr11 30316734 30316804 -120466749 + MIR SINE MIR 23 90 -118 638 276 133 55 chr11 30317365 30317749 -120465804 - MLT1J1 LTR MaLR 0 446 33 241 356 0 0 chr11 30317775 30317865 -120465688 - MIR SINE MIR -72 190 101 186 246 0 66 chr11 30318400 30318461 -120465092 - L2 LINE L2 -75 3197 3141 1951 242 36 62 chr11 30319344 30320118 -120463435 - L1ME1 LINE L1 -5 6230 5477 302 0 26 0 chr11 30320133 30320171 -120463382 + (TAGA)n Simple_repeat Simple_repeat 2 40 0 353 239 28 9 chr11 30320175 30320284 -120463269 + L1MA10 LINE L1 6224 6334 0 2626 251 79 14 chr11 30320338 30321316 -120462237 - L1ME1 LINE L1 -1318 4897 3857 304 283 42 30 chr11 30321321 30321487 -120462066 - L1ME1 LINE L1 -2647 3568 3401 * 2879 230 83 41 chr11 30321484 30322461 -120461092 - L1MD2 LINE L1 -4 6355 5338 2287 260 34 26 chr11 30322601 30323440 -120460113 - L1ME1 LINE L1 -2994 3221 2373 252 86 0 0 chr11 30323440 30323475 -120460078 + (TG)n Simple_repeat Simple_repeat 2 36 0 2287 260 34 26 chr11 30323475 30323516 -120460037 - L1ME1 LINE L1 -3842 2373 2334 1878 99 7 7 chr11 30323565 30323837 -120459716 - AluSc SINE Alu -1 308 37 1353 145 45 22 chr11 30323881 30324150 -120459403 - L1MC2 LINE L1 -4 6340 6066 557 142 198 68 chr11 30324170 30324419 -120459134 - MER4C LTR ERV1 -20 445 157 1477 156 53 47 chr11 30324429 30324768 -120458785 - MER4A LTR ERV1 -323 341 1 1722 171 23 11 chr11 30324770 30325121 -120458432 - L1MC2 LINE L1 -287 6057 5703 1674 276 92 49 chr11 30325137 30325780 -120457773 - L1ME1 LINE L1 -4102 2294 1680 1780 126 79 7 chr11 30325780 30326057 -120457496 - AluSg SINE Alu -13 297 1 1674 276 92 49 chr11 30326057 30326798 -120456755 - L1ME1 LINE L1 -4716 1680 850 647 189 0 0 chr11 30326953 30327059 -120456494 + Tigger3(Golem) DNA MER2_type 2920 3025 -4 716 302 76 44 chr11 30327064 30327471 -120456082 - L1ME1 LINE L1 -5900 496 77 297 128 0 0 chr11 30327473 30327520 -120456033 + (TA)n Simple_repeat Simple_repeat 2 48 0 4154 68 0 2 chr11 30327527 30328059 -120455494 - L1PA7 LINE L1 -61 6093 5563 22 35 0 0 chr11 30328103 30328132 -120455421 + AT_rich Low_complexity Low_complexity 1 29 0 769 52 0 0 chr11 30328279 30328376 -120455177 + L1PA3 LINE L1 2 98 -6048 * 37308 37 25 1 chr11 30328345 30333782 -120449771 + L1PA3 LINE L1 580 6150 -5 1573 318 96 11 chr11 30335453 30336039 -120447514 + L2 LINE L2 951 1593 -1721 1941 180 12 3 chr11 30336039 30336384 -120447169 + MER7A DNA MER2_type 1 346 0 1573 318 96 11 chr11 30336384 30336414 -120447139 + L2 LINE L2 1593 1619 -1695 1226 162 154 22 chr11 30336417 30336656 -120446897 + L1PB4 LINE L1 5847 6128 -28 2431 147 60 0 chr11 30336656 30337058 -120446495 - MSTB LTR MaLR 0 426 1 1226 162 154 22 chr11 30337058 30337090 -120446463 + L1PB4 LINE L1 6128 6154 -2 3157 292 111 16 chr11 30337098 30338458 -120445095 + L2 LINE L2 1604 3084 -229 717 267 99 56 chr11 30338486 30338895 -120444658 - LTR33A LTR ERVL -12 511 99 348 313 67 34 chr11 30338956 30339135 -120444418 + L2 LINE L2 3129 3313 0 6925 41 7 0 chr11 30340478 30341332 -120442221 - L1PA4 LINE L1 0 6155 5296 243 311 25 17 chr11 30341423 30341542 -120442011 + CT-rich Low_complexity Low_complexity 3 122 0 326 294 98 33 chr11 30341769 30341953 -120441600 + MIR SINE MIR 13 208 -54 693 242 12 19 chr11 30342149 30342339 -120441214 + MLT1H LTR MaLR 14 242 -307 286 333 17 8 chr11 30342355 30342472 -120441081 + MIR SINE MIR 122 239 -23 2676 214 6 4 chr11 30342978 30343498 -120440055 + MER74A LTR ERVL 30 550 -8 2318 73 3 7 chr11 30343511 30343799 -120439754 - AluSp SINE Alu -26 287 1 348 264 57 93 chr11 30343882 30344022 -120439531 - MIR SINE MIR -63 145 11 2964 145 41 19 chr11 30344072 30344588 -120438965 + MER1A DNA MER1_type 1 527 0 310 215 54 65 chr11 30344894 30344987 -120438566 + MIR3 SINE MIR 63 154 -54 884 305 53 51 chr11 30345291 30345769 -120437784 + L2 LINE L2 2234 2715 -599 2477 51 6 16 chr11 30345769 30346082 -120437471 + AluY SINE Alu 1 310 -1 884 305 53 51 chr11 30346082 30346114 -120437439 + L2 LINE L2 2715 2745 -569 1958 160 92 15 chr11 30346114 30346459 -120437094 + MSTB1 LTR MaLR 2 384 -48 555 90 0 0 chr11 30346459 30346537 -120437016 + MADE1 DNA Mariner 3 80 0 1958 160 92 15 chr11 30346537 30346591 -120436962 + MSTB1 LTR MaLR 384 432 0 369 302 137 41 chr11 30346591 30347003 -120436550 + L2 LINE L2 2740 3199 -114 270 300 68 72 chr11 30347289 30347526 -120436027 - MIR SINE MIR -1 261 26 1814 218 64 23 chr11 30347551 30348032 -120435521 - MLT1D LTR MaLR -4 501 1 301 200 0 0 chr11 30349066 30349126 -120434427 - MER103 DNA DNA -72 94 35 1862 197 69 17 chr11 30349146 30349553 -120434000 + MSTA LTR MaLR 1 428 0 234 276 0 0 chr11 30349771 30349829 -120433724 - MER103 DNA DNA 0 166 109 685 293 4 36 chr11 30350421 30350701 -120432852 + L1MB8 LINE L1 5635 5905 -273 * 2281 167 59 101 chr11 30350465 30351158 -120432395 + L1MC2 LINE L1 5672 6335 -9 37 23 0 0 chr11 30351158 30351202 -120432351 + AT_rich Low_complexity Low_complexity 1 44 0 1050 250 44 50 chr11 30351849 30352068 -120431485 - MLT1E2 LTR MaLR 0 626 407 1587 184 3 28 chr11 30352068 30352350 -120431203 + AluJo SINE Alu 3 277 -35 1050 250 44 50 chr11 30352350 30352374 -120431179 - MLT1E2 LTR MaLR -219 407 384 297 0 0 0 chr11 30352374 30352407 -120431146 + (CA)n Simple_repeat Simple_repeat 2 34 0 1050 250 44 50 chr11 30352407 30352767 -120430786 - MLT1E2 LTR MaLR -242 384 51 198 0 0 0 chr11 30352833 30352855 -120430698 + (TATG)n Simple_repeat Simple_repeat 2 23 0 3862 144 22 0 chr11 30352865 30353488 -120430065 - L1PA16 LINE L1 -9 6157 5521 2059 174 60 39 chr11 30353491 30353786 -120429767 - MSTB LTR MaLR -4 422 114 2736 81 8 6 chr11 30353786 30354146 -120429407 + THE1B LTR MaLR 1 361 -3 2059 174 60 39 chr11 30354146 30354263 -120429290 - MSTB LTR MaLR -312 114 1 6965 185 35 9 chr11 30354263 30354357 -120429196 - MSTB-int LTR MaLR 0 1651 1561 1223 7 0 0 chr11 30354357 30354497 -120429056 + L1PA2 LINE L1 6016 6155 0 6965 185 35 9 chr11 30354497 30355956 -120427597 - MSTB-int LTR MaLR -90 1561 1 2042 173 64 5 chr11 30355968 30356361 -120427192 - MSTA LTR MaLR -12 416 1 2368 208 48 7 chr11 30356361 30357089 -120426464 - L1PA16 LINE L1 -638 5527 4780 1945 145 11 41 chr11 30357446 30357812 -120425741 + THE1A LTR MaLR 1 355 0 10571 106 35 4 chr11 30357812 30359345 -120424208 + THE1A-int LTR MaLR 1 1580 0 1944 128 28 42 chr11 30359345 30359705 -120423848 + THE1A LTR MaLR 1 355 0 221 0 0 33 chr11 30359889 30359919 -120423634 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 1573 220 152 125 chr11 30361186 30361819 -120421734 + MLT1E2 LTR MaLR 5 626 0 610 273 20 0 chr11 30361820 30361970 -120421583 - MIR SINE MIR -65 197 45 218 246 0 35 chr11 30362239 30362296 -120421257 + MIR SINE MIR 63 117 -91 1006 205 131 11 chr11 30362312 30362640 -120420913 + MSTA LTR MaLR 1 364 0 370 250 56 74 chr11 30362693 30362909 -120420644 + L1ME4a LINE L1 5789 6000 -121 211 293 189 19 chr11 30363159 30363265 -120420288 + L2 LINE L2 3134 3257 -15 421 172 36 25 chr11 30364108 30364260 -120419293 + MLT1B LTR MaLR 1 188 -186 409 250 0 0 chr11 30364321 30364409 -120419144 + MLT1B LTR MaLR 301 388 -2 2107 148 120 5 chr11 30365288 30365672 -120417881 - MSTA LTR MaLR 0 428 1 352 311 78 53 chr11 30366058 30366264 -120417289 + MLT1K LTR MaLR 372 582 -6 310 361 32 32 chr11 30367149 30367307 -120416246 - LTR67 LTR ERVL -251 306 149 305 250 35 62 chr11 30367515 30367659 -120415894 - MER103 DNA DNA -21 145 6 1381 256 76 10 chr11 30368465 30368872 -120414681 - MLT1C LTR MaLR 0 467 34 180 0 0 0 chr11 30368999 30369019 -120414534 + (GA)n Simple_repeat Simple_repeat 2 21 0 * 234 0 0 0 chr11 30369018 30369044 -120414509 + (TG)n Simple_repeat Simple_repeat 2 27 0 255 315 11 22 chr11 30369516 30369605 -120413948 - MER5A DNA MER1_type 0 189 102 2599 111 3 8 chr11 30369615 30369992 -120413561 + THE1C LTR MaLR 1 375 0 225 331 116 8 chr11 30370266 30370387 -120413166 + L2 LINE L2 3137 3270 -2 379 333 108 7 chr11 30371185 30371391 -120412162 + MIR SINE MIR 20 248 -14 239 114 0 23 chr11 30372239 30372283 -120411270 - L1MCa LINE L1 -4378 2048 2006 291 177 0 62 chr11 30372296 30372392 -120411161 - L1MC4 LINE L1 -1339 6703 6614 372 189 0 0 chr11 30372392 30372466 -120411087 + (CATATA)n Simple_repeat Simple_repeat 6 79 0 228 254 0 0 chr11 30372466 30372521 -120411032 + GA-rich Low_complexity Low_complexity 1 55 0 1888 265 89 33 chr11 30372755 30373426 -120410127 + L2 LINE L2 2084 2792 -522 254 314 17 25 chr11 30373419 30373537 -120410016 + L2 LINE L2 3192 3308 -5 * 509 258 84 24 chr11 30374908 30375075 -120408478 + MER5B DNA MER1_type 1 177 -1 320 179 18 0 chr11 30375229 30375285 -120408268 + MER69 DNA AcHobo 1 57 -2469 515 264 7 0 chr11 30375437 30375581 -120407972 + MER69 DNA AcHobo 2382 2526 0 362 303 81 46 chr11 30376659 30376908 -120406645 - L1 LINE L1 -1852 4294 4055 1893 143 0 19 chr11 30376908 30377216 -120406337 - AluSg1 SINE Alu -7 302 1 362 303 81 46 chr11 30377216 30377570 -120405983 - L1 LINE L1 -2091 4055 3670 216 242 16 32 chr11 30377964 30378026 -120405527 - MIR SINE MIR -122 140 80 267 333 0 0 chr11 30378267 30378372 -120405181 - L1P LINE L1 -2329 3817 3713 22 0 0 0 chr11 30378699 30378721 -120404832 + AT_rich Low_complexity Low_complexity 1 22 0 4573 200 37 18 chr11 30379468 30380489 -120403064 + L1MC3 LINE L1 5439 6479 -1306 33 25 0 0 chr11 30380568 30380608 -120402945 + AT_rich Low_complexity Low_complexity 1 40 0 2682 111 13 0 chr11 30380653 30381041 -120402512 - L1PA10 LINE L1 0 6168 5776 1490 228 46 52 chr11 30381086 30381604 -120401949 - Charlie1b DNA MER1_type -8 515 1 4933 176 24 25 chr11 30381689 30383347 -120400206 + L1MA7 LINE L1 4645 6291 0 462 145 103 62 chr11 30383355 30383500 -120400053 + L1MA9 LINE L1 6161 6311 -1 2143 108 0 13 chr11 30384139 30384444 -120399109 + AluSg SINE Alu 9 309 -1 635 187 8 15 chr11 30384675 30384809 -120398744 + MLT1B LTR MaLR 11 143 -247 236 280 65 0 chr11 30384814 30384907 -120398646 + MLT1I LTR MaLR 72 170 -220 1803 194 13 76 chr11 30384907 30385381 -120398172 + L1MA10 LINE L1 5891 6334 0 740 241 10 31 chr11 30385634 30385829 -120397724 - L1PB4 LINE L1 0 6156 5966 561 300 60 15 chr11 30385866 30386066 -120397487 + MLT1I LTR MaLR 198 406 -3 21 71 0 0 chr11 30386948 30386990 -120396563 + AT_rich Low_complexity Low_complexity 1 42 0 1408 199 17 30 chr11 30387638 30387939 -120395614 - AluJo SINE Alu -15 297 1 1197 207 102 18 chr11 30388262 30388537 -120395016 - AluJb SINE Alu -2 300 3 371 318 94 75 chr11 30388634 30389059 -120394494 - L1ME LINE L1 -372 5818 5386 477 287 67 46 chr11 30389076 30389404 -120394149 - L1ME LINE L1 -4641 1574 1240 546 235 51 99 chr11 30389432 30389988 -120393565 - L1ME LINE L1 -4982 1223 667 374 364 68 22 chr11 30390358 30390773 -120392780 - L1ME LINE L1 -5929 467 34 243 311 0 0 chr11 30391627 30391701 -120391852 + MER63 DNA MER1_type 1 700 -136 222 206 151 27 chr11 30392362 30392435 -120391118 + L2 LINE L2 3232 3313 0 577 239 8 0 chr11 30392502 30392619 -120390934 + FLAM_A SINE Alu 5 122 -11 209 143 20 20 chr11 30394239 30394288 -120389265 + CT-rich Low_complexity Low_complexity 2 50 0 1257 234 58 58 chr11 30394601 30394859 -120388694 - MLT1C LTR MaLR -1 466 206 1881 123 4 7 chr11 30394859 30395135 -120388418 - AluSx SINE Alu -37 275 1 1257 234 58 58 chr11 30395135 30395338 -120388215 - MLT1C LTR MaLR -260 207 5 214 301 24 24 chr11 30395375 30395458 -120388095 - MIR SINE MIR -136 126 44 190 288 14 41 chr11 30395544 30395617 -120387936 + L2 LINE L2 3243 3313 0 229 163 41 0 chr11 30395890 30395939 -120387614 - L1MC4 LINE L1 -1334 6708 6658 210 71 0 0 chr11 30395939 30395967 -120387586 + (TG)n Simple_repeat Simple_repeat 2 29 0 354 315 27 7 chr11 30397697 30397846 -120385707 + MIR SINE MIR 101 252 -10 278 213 0 13 chr11 30399010 30399085 -120384468 + (TATG)n Simple_repeat Simple_repeat 3 76 0 231 36 0 0 chr11 30399192 30399220 -120384333 + (CA)n Simple_repeat Simple_repeat 1 28 0 327 277 26 19 chr11 30400073 30400228 -120383325 + (TA)n Simple_repeat Simple_repeat 1 156 0 303 250 55 47 chr11 30400240 30400368 -120383185 - L1MC4 LINE L1 -1339 6703 6575 345 47 0 0 chr11 30400460 30400503 -120383050 + (CA)n Simple_repeat Simple_repeat 1 43 0 462 333 70 5 chr11 30400564 30400777 -120382776 + MIR SINE MIR 36 262 0 54 56 0 0 chr11 30400851 30400940 -120382613 + AT_rich Low_complexity Low_complexity 1 89 0 2356 84 18 60 chr11 30401215 30401394 -120382159 + THE1B LTR MaLR 1 157 -207 2114 129 0 0 chr11 30401394 30401696 -120381857 + AluSx SINE Alu 1 302 -10 2356 84 18 60 chr11 30401696 30401896 -120381657 + THE1B LTR MaLR 157 364 0 3170 81 37 0 chr11 30403374 30403809 -120379744 + MLT2A2 LTR ERVL 3 453 0 333 0 0 0 chr11 30403901 30403938 -120379615 + (TG)n Simple_repeat Simple_repeat 2 38 0 2453 60 0 3 chr11 30406359 30406658 -120376895 + AluY SINE Alu 1 298 -13 40 21 0 0 chr11 30406987 30407034 -120376519 + AT_rich Low_complexity Low_complexity 1 47 0 233 319 32 0 chr11 30407513 30407607 -120375946 + L1ME4a LINE L1 5946 6042 -79 21 82 0 0 chr11 30407643 30407692 -120375861 + AT_rich Low_complexity Low_complexity 1 49 0 751 257 0 33 chr11 30407753 30407936 -120375617 + MER5B DNA MER1_type 2 178 0 22 0 0 0 chr11 30408238 30408260 -120375293 + AT_rich Low_complexity Low_complexity 1 22 0 265 292 29 3 chr11 30408396 30408556 -120374997 - MIR SINE MIR -54 208 2 306 301 176 0 chr11 30409228 30409364 -120374189 + L2 LINE L2 2226 2385 -929 432 367 162 18 chr11 30409368 30409822 -120373731 + L2 LINE L2 2550 3070 -243 545 347 29 67 chr11 30410428 30411044 -120372509 + HAL1b LINE L1 49 641 -707 34 89 0 0 chr11 30411044 30411134 -120372419 + AT_rich Low_complexity Low_complexity 1 90 0 252 0 0 0 chr11 30411523 30411551 -120372002 + (TA)n Simple_repeat Simple_repeat 1 28 0 * 303 28 0 0 chr11 30411550 30411586 -120371967 + (CA)n Simple_repeat Simple_repeat 2 37 0 479 329 75 49 chr11 30411675 30412515 -120371038 + L1M4 LINE L1 2287 3174 -2972 554 284 59 22 chr11 30412742 30413063 -120370490 + L1MC4 LINE L1 7163 7495 -547 232 259 0 0 chr11 30413194 30413213 -120370340 + A-rich Low_complexity Low_complexity 1 19 -39 1337 164 152 8 chr11 30413213 30413476 -120370077 + AluJb SINE Alu 2 302 0 232 259 0 0 chr11 30413476 30413514 -120370039 + A-rich Low_complexity Low_complexity 18 58 0 385 241 78 43 chr11 30414688 30414829 -120368724 + MLT1J2 LTR MaLR 20 165 -285 936 115 0 0 chr11 30414862 30414984 -120368569 + FLAM_C SINE Alu 2 123 -20 361 167 15 0 chr11 30415012 30415078 -120368475 - LTR30 LTR ERV1 -104 618 552 234 250 132 0 chr11 30415131 30415199 -120368354 + AluS SINE Alu 224 300 -1 348 161 0 0 chr11 30415199 30415261 -120368292 + GA-rich Low_complexity Low_complexity 1 62 0 2129 112 30 0 chr11 30416209 30416504 -120367049 - AluSq SINE Alu -9 304 1 591 15 0 0 chr11 30416709 30416777 -120366776 + (TA)n Simple_repeat Simple_repeat 1 68 0 1014 314 89 28 chr11 30417791 30418228 -120365325 + LTR33 LTR ERVL 3 466 -55 1292 300 124 20 chr11 30418567 30419114 -120364439 + MLT2F LTR ERVL 59 662 -1 31 0 0 0 chr11 30419963 30419994 -120363559 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr11 30420604 30420625 -120362928 + AT_rich Low_complexity Low_complexity 1 21 0 329 291 169 0 chr11 30421034 30421182 -120362371 - MIR SINE MIR -39 223 51 233 154 39 0 chr11 30422182 30422234 -120361319 + CT-rich Low_complexity Low_complexity 2 55 0 2045 125 0 0 chr11 30422358 30422646 -120360907 + AluSq SINE Alu 16 303 -10 2575 172 70 78 chr11 30423892 30424588 -120358965 - LTR8 LTR ERV1 0 691 1 21 71 0 0 chr11 30425117 30425159 -120358394 + AT_rich Low_complexity Low_complexity 1 42 0 2358 235 117 29 chr11 30425970 30426831 -120356722 - L1MC4 LINE L1 0 8042 7106 2715 260 123 41 chr11 30426869 30428197 -120355356 - L1MC4a LINE L1 -1103 6705 5269 201 244 15 7 chr11 30428295 30428430 -120355123 + (TA)n Simple_repeat Simple_repeat 2 137 0 370 279 106 56 chr11 30428595 30429093 -120354460 - L1MC4a LINE L1 -886 5260 4738 354 266 71 71 chr11 30429479 30429731 -120353822 - L1MC4a LINE L1 -1981 4165 3914 847 279 27 0 chr11 30429954 30430173 -120353380 - MER115 DNA AcHobo -7 686 462 1159 179 88 148 chr11 30430649 30431271 -120352282 + LTR4 LTR ERV1 1 585 -3 38404 162 33 21 chr11 30431294 30437754 -120345799 + HERV3 LTR ERV1 19 6555 -1871 8856 171 49 32 chr11 30437754 30439496 -120344057 + HERV3 LTR ERV1 6656 8426 0 1100 175 87 159 chr11 30439497 30440131 -120343422 + LTR4 LTR ERV1 1 588 0 389 293 58 67 chr11 30440225 30440465 -120343088 + L1ME4a LINE L1 5592 5833 -288 1534 203 10 17 chr11 30440465 30440755 -120342798 - AluJo SINE Alu -24 288 1 389 293 58 67 chr11 30440755 30441036 -120342517 + L1ME4a LINE L1 5833 6108 -13 199 289 0 0 chr11 30441049 30441094 -120342459 + L3 LINE CR1 1514 1558 -19 28 0 0 0 chr11 30441531 30441559 -120341994 + AT_rich Low_complexity Low_complexity 1 28 0 324 351 53 0 chr11 30441743 30441894 -120341659 + MIR SINE MIR 39 197 -65 26 50 0 0 chr11 30442449 30442489 -120341064 + AT_rich Low_complexity Low_complexity 1 40 0 215 290 145 30 chr11 30444331 30444462 -120339091 - MIR SINE MIR -116 146 1 309 287 47 16 chr11 30445086 30445215 -120338338 - L2 LINE L2 -58 3255 3123 181 397 0 0 chr11 30445714 30445777 -120337776 + MIR SINE MIR 91 153 -55 1645 251 15 23 chr11 30446502 30446973 -120336580 + MLT1C LTR MaLR 1 467 0 306 0 0 0 chr11 30447721 30447755 -120335798 + (TG)n Simple_repeat Simple_repeat 1 34 0 430 293 20 13 chr11 30448069 30448219 -120335334 - MIR SINE MIR -6 256 106 682 183 8 0 chr11 30448347 30448467 -120335086 + FLAM_C SINE Alu 3 123 -20 23 0 0 0 chr11 30448483 30448506 -120335047 + AT_rich Low_complexity Low_complexity 1 23 0 766 297 24 0 chr11 30449029 30449238 -120334315 + MIR SINE MIR 8 221 -41 23 0 0 0 chr11 30449259 30449282 -120334271 + AT_rich Low_complexity Low_complexity 1 23 0 194 302 111 16 chr11 30449376 30449439 -120334114 - MIR SINE MIR -108 100 32 1501 104 45 0 chr11 30449614 30449834 -120333719 - MER30 DNA MER1_type 0 230 1 327 295 121 30 chr11 30450296 30450462 -120333091 - MIR SINE MIR -72 190 10 281 236 62 120 chr11 30451524 30451732 -120331821 + MIR SINE MIR 57 252 -10 22 0 0 0 chr11 30451742 30451764 -120331789 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr11 30452554 30452575 -120330978 + AT_rich Low_complexity Low_complexity 1 21 0 22 70 0 0 chr11 30453065 30453108 -120330445 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr11 30453149 30453170 -120330383 + AT_rich Low_complexity Low_complexity 1 21 0 249 281 79 22 chr11 30453296 30453435 -120330118 + L1ME LINE L1 5424 5570 -592 186 133 0 0 chr11 30453550 30453580 -120329973 + (CA)n Simple_repeat Simple_repeat 2 31 0 652 332 69 24 chr11 30454380 30454841 -120328712 + HAL1 LINE L1 804 1285 -1222 233 268 113 0 chr11 30454851 30454922 -120328631 + HAL1 LINE L1 1680 1758 -749 253 330 46 31 chr11 30455142 30455403 -120328150 + L1MDa LINE L1 958 1222 -4897 363 300 101 44 chr11 30455450 30455739 -120327814 + L1MDa LINE L1 1316 1586 -914 22 35 0 0 chr11 30455739 30455768 -120327785 + AT_rich Low_complexity Low_complexity 1 29 0 363 300 101 44 chr11 30455768 30455825 -120327728 + L1MDa LINE L1 1586 1638 -862 23 0 0 0 chr11 30456405 30456428 -120327125 + AT_rich Low_complexity Low_complexity 1 23 0 440 281 102 59 chr11 30456432 30457040 -120326513 + L1MDa LINE L1 2303 2884 -3245 279 0 0 0 chr11 30457040 30457071 -120326482 + (TA)n Simple_repeat Simple_repeat 2 32 0 440 281 102 59 chr11 30457071 30457184 -120326369 + L1MDa LINE L1 2884 2991 -3138 1960 125 40 0 chr11 30457184 30457480 -120326073 + AluSg SINE Alu 1 308 -2 440 281 102 59 chr11 30457480 30457789 -120325764 + L1MDa LINE L1 2991 3378 -2751 25 31 0 0 chr11 30458060 30458092 -120325461 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr11 30458204 30458225 -120325328 + AT_rich Low_complexity Low_complexity 1 21 0 533 282 18 0 chr11 30458374 30458544 -120325009 - L1ME3A LINE L1 -222 5948 5776 270 258 0 0 chr11 30458661 30458727 -120324826 - MER116 DNA Mariner -14 66 1 183 363 18 71 chr11 30458763 30458783 -120324770 + L2 LINE L2 3149 3169 -103 1608 141 28 94 chr11 30458783 30459144 -120324409 + MER1B DNA MER1_type 1 337 0 183 363 18 71 chr11 30459144 30459236 -120324317 + L2 LINE L2 3169 3255 -17 183 100 0 0 chr11 30459853 30459883 -120323670 + (TTCA)n Simple_repeat Simple_repeat 4 33 0 358 304 109 70 chr11 30459911 30460224 -120323329 + L1MDa LINE L1 3335 3659 -2470 27 29 0 0 chr11 30460348 30460382 -120323171 + AT_rich Low_complexity Low_complexity 1 34 0 2417 87 0 0 chr11 30460603 30460914 -120322639 + AluY SINE Alu 1 311 0 5181 152 10 24 chr11 30461184 30461694 -120321859 - L1MB1 LINE L1 -6 6162 5647 2186 110 0 7 chr11 30461694 30461993 -120321560 - AluSc SINE Alu -12 297 1 5181 152 10 24 chr11 30461993 30462646 -120320907 - L1MB1 LINE L1 -521 5647 5018 1537 229 22 14 chr11 30462654 30463016 -120320537 - MLT1A1 LTR MaLR 0 365 1 192 326 51 58 chr11 30466329 30466467 -120317086 + MIR SINE MIR 52 188 -74 22 0 0 0 chr11 30467297 30467319 -120316234 + AT_rich Low_complexity Low_complexity 1 22 0 360 61 20 0 chr11 30467456 30467505 -120316048 + MADE1 DNA Mariner 6 55 -25 1562 241 65 45 chr11 30467759 30468343 -120315210 - L1ME2 LINE L1 -127 6037 5442 261 159 204 23 chr11 30468400 30468488 -120315065 - L1ME LINE L1 -682 5488 5385 1558 227 79 36 chr11 30468572 30469157 -120314396 + HAL1 LINE L1 852 1461 -1046 249 202 146 11 chr11 30469167 30469256 -120314297 + HAL1 LINE L1 1551 1651 -856 38 39 0 39 chr11 30469951 30470029 -120313524 + AT_rich Low_complexity Low_complexity 1 75 0 28 61 0 0 chr11 30470050 30470099 -120313454 + AT_rich Low_complexity Low_complexity 1 49 0 297 268 37 12 chr11 30471519 30471601 -120311952 - MIR3 SINE MIR -121 87 4 2075 91 7 45 chr11 30472265 30472573 -120310980 + AluSq SINE Alu 5 300 -13 214 203 0 85 chr11 30473795 30473854 -120309699 - MIR SINE MIR -1 261 208 305 340 139 14 chr11 30474072 30474287 -120309266 - HAL1b LINE L1 -1046 302 61 520 291 141 60 chr11 30474298 30474844 -120308709 + MLT1E LTR MaLR 1 590 -3 2359 73 0 0 chr11 30475191 30475510 -120308043 - AluY SINE Alu 0 311 1 50 31 0 0 chr11 30477597 30477661 -120305892 + AT_rich Low_complexity Low_complexity 1 64 0 315 71 0 0 chr11 30477853 30477895 -120305658 + (CA)n Simple_repeat Simple_repeat 2 43 0 2959 63 5 0 chr11 30479445 30479826 -120303727 - L1PA7 LINE L1 0 6154 5772 1734 183 71 45 chr11 30479839 30480261 -120303292 - Tigger2a DNA MER2_type -1 433 1 3549 172 10 67 chr11 30480427 30481130 -120302423 + L1M3f LINE L1 6 668 -4660 648 312 41 19 chr11 30481603 30481872 -120301681 - LTR33 LTR ERVL -237 284 10 1088 179 0 0 chr11 30481933 30482112 -120301441 - MSTA LTR MaLR 0 428 250 569 180 27 0 chr11 30482114 30482225 -120301328 + L1M3f LINE L1 531 644 -4684 1340 172 31 12 chr11 30482225 30482481 -120301072 - MSTA LTR MaLR -165 263 3 9405 166 26 8 chr11 30482513 30484120 -120299433 - MSTA-int LTR MaLR -15 1636 1 2363 162 36 2 chr11 30484120 30484534 -120299019 - MSTA LTR MaLR 0 428 1 1951 162 0 0 chr11 30485361 30485658 -120297895 + AluJb SINE Alu 2 298 -14 314 292 71 30 chr11 30486959 30487127 -120296426 - MER5B DNA MER1_type -3 175 1 183 286 36 98 chr11 30487147 30487259 -120296294 - MIR SINE MIR -63 145 41 * 451 296 50 30 chr11 30487219 30487418 -120296135 + MIR SINE MIR 20 222 -40 467 245 187 26 chr11 30487666 30487821 -120295732 + MER5A DNA MER1_type 10 189 0 290 25 0 25 chr11 30489027 30489067 -120294486 + (GA)n Simple_repeat Simple_repeat 2 40 0 261 234 171 27 chr11 30489932 30490043 -120293510 + MIR SINE MIR 126 252 -10 1347 229 18 4 chr11 30491916 30492195 -120291358 + AluJo SINE Alu 1 283 -19 38 68 0 0 chr11 30492212 30492285 -120291268 + AT_rich Low_complexity Low_complexity 1 73 0 452 315 20 51 chr11 30492678 30492932 -120290621 + L1M4 LINE L1 4789 5034 -1112 6300 85 15 2 chr11 30493054 30494187 -120289366 + L1PA13 LINE L1 5016 6160 -3 4274 173 40 12 chr11 30494187 30495008 -120288545 + L1PA16 LINE L1 5323 6166 0 720 201 169 0 chr11 30495021 30495210 -120288343 + MER67D LTR ERV1 294 514 0 794 292 14 20 chr11 30496518 30496830 -120286723 - L1MC/D LINE L1 -768 5591 5281 285 292 70 33 chr11 30497059 30497302 -120286251 - L1MC/D LINE L1 -1173 4973 4722 21 36 0 0 chr11 30497335 30497363 -120286190 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr11 30498516 30498537 -120285016 + AT_rich Low_complexity Low_complexity 1 21 0 1514 209 16 44 chr11 30498550 30498913 -120284640 + MLT1A1 LTR MaLR 1 353 -12 1513 296 73 24 chr11 30498914 30499116 -120284437 + MLT1E LTR MaLR 17 208 -385 183 42 0 0 chr11 30499116 30499140 -120284413 + (CTTG)n Simple_repeat Simple_repeat 1 24 0 1513 296 73 24 chr11 30499140 30499485 -120284068 + MLT1E LTR MaLR 208 591 -2 635 282 157 28 chr11 30499498 30500011 -120283542 - MLT1G LTR MaLR 0 590 3 250 308 43 76 chr11 30500094 30500279 -120283274 + MIR SINE MIR 64 242 -20 543 314 59 8 chr11 30500776 30501012 -120282541 + MIR SINE MIR 1 248 -14 313 290 40 40 chr11 30501870 30501970 -120281583 - MIR SINE MIR -130 132 33 226 359 0 0 chr11 30502106 30502170 -120281383 + L2 LINE L2 3209 3272 0 244 214 24 107 chr11 30502986 30503070 -120280483 + L2 LINE L2 3191 3267 -5 456 247 222 26 chr11 30503213 30503407 -120280146 - MIR SINE MIR -14 248 17 363 44 0 0 chr11 30503623 30503668 -120279885 + (CAT)n Simple_repeat Simple_repeat 2 46 0 22 70 0 0 chr11 30503689 30503732 -120279821 + AT_rich Low_complexity Low_complexity 1 43 0 311 236 162 54 chr11 30503947 30504095 -120279458 + MIR SINE MIR 85 248 -14 1850 191 16 8 chr11 30504919 30505291 -120278262 + L1PB4 LINE L1 5780 6154 -2 340 302 71 40 chr11 30505390 30505516 -120278037 - L2 LINE L2 -5 3308 3179 342 371 13 19 chr11 30505981 30506140 -120277413 - MIR SINE MIR -102 160 3 2679 106 0 8 chr11 30507246 30507624 -120275929 + THE1C LTR MaLR 1 375 0 1013 233 33 70 chr11 30507663 30507994 -120275559 - L1M4 LINE L1 -2331 3815 3497 300 281 119 19 chr11 30508000 30508210 -120275343 - L1M4 LINE L1 -2692 3454 3224 291 214 107 0 chr11 30508278 30508381 -120275172 + L1ME1 LINE L1 4104 4217 -1929 1273 206 103 7 chr11 30508443 30508562 -120274991 - MER2 DNA MER2_type -15 330 224 1705 108 9 4 chr11 30508562 30508793 -120274760 + AluSg SINE Alu 62 293 -17 1273 206 103 7 chr11 30508793 30508965 -120274588 - MER2 DNA MER2_type -121 224 11 2836 127 13 16 chr11 30508966 30509415 -120274138 - MER83 LTR ERV1 0 448 1 2387 229 90 43 chr11 30509443 30509956 -120273597 + L1ME1 LINE L1 4226 4714 -1470 2327 99 3 3 chr11 30509956 30510269 -120273284 + AluSq SINE Alu 1 313 0 2387 229 90 43 chr11 30510269 30510393 -120273160 + L1ME1 LINE L1 4714 4831 -1353 2329 102 0 13 chr11 30510393 30510707 -120272846 + AluSg SINE Alu 1 310 0 2387 229 90 43 chr11 30510707 30511151 -120272402 + L1ME1 LINE L1 4831 5360 -824 2247 118 3 0 chr11 30511151 30511457 -120272096 + AluSx SINE Alu 1 307 -5 2387 229 90 43 chr11 30511457 30511552 -120272001 + L1ME1 LINE L1 5360 5449 -735 4060 140 38 68 chr11 30511563 30512831 -120270722 - pTR5 LTR ERV1 -143 2295 744 2211 237 74 26 chr11 30512831 30513520 -120270033 + L1ME1 LINE L1 5441 6162 -4 405 0 0 0 chr11 30514707 30514752 -120268801 + (TG)n Simple_repeat Simple_repeat 2 46 0 1931 156 8 50 chr11 30515574 30515953 -120267600 + MLT1A1 LTR MaLR 1 363 -2 370 323 15 31 chr11 30516407 30516537 -120267016 - L2 LINE L2 -2 3311 3184 470 309 100 26 chr11 30517091 30517321 -120266232 - MIR SINE MIR -11 251 5 1390 251 43 3 chr11 30517801 30518147 -120265406 - MLT1A1 LTR MaLR -5 360 1 466 172 0 11 chr11 30518185 30518278 -120265275 + L1MB3 LINE L1 6080 6171 -12 557 315 35 10 chr11 30518278 30518475 -120265078 - MIR SINE MIR -56 206 5 363 310 71 7 chr11 30518581 30518736 -120264817 + MIR3 SINE MIR 38 202 -6 527 287 50 11 chr11 30519409 30519590 -120263963 - MIR SINE MIR 0 262 75 4789 104 1 8 chr11 30520062 30520770 -120262783 + L1PA14 LINE L1 5454 6156 -5 468 416 64 16 chr11 30521265 30521700 -120261853 - L2 LINE L2 0 3272 2817 532 337 53 21 chr11 30522239 30522482 -120261071 - MIR SINE MIR -1 261 11 626 271 49 31 chr11 30523172 30523397 -120260156 + MIR SINE MIR 2 230 -32 206 330 75 9 chr11 30523564 30523670 -120259883 - L2 LINE L2 -406 2908 2796 227 114 23 0 chr11 30525935 30525979 -120257574 + (CA)n Simple_repeat Simple_repeat 2 46 0 598 282 28 37 chr11 30527001 30527217 -120256336 + MIR SINE MIR 48 261 -1 293 205 45 10 chr11 30527563 30527696 -120255857 - MER58B DNA MER1_type 0 341 173 259 281 122 0 chr11 30527724 30527806 -120255747 - LTR33 LTR ERVL -424 97 6 418 270 43 17 chr11 30527974 30528089 -120255464 + L2 LINE L2 3196 3313 0 808 262 18 18 chr11 30528132 30528361 -120255192 - L1ME3A LINE L1 -6 6662 6434 903 279 16 10 chr11 30528363 30528675 -120254878 - L1ME3A LINE L1 -274 6394 6081 2332 151 54 14 chr11 30528680 30529104 -120254449 - MER65A LTR ERV1 -4 441 1 498 281 80 31 chr11 30529104 30529636 -120253917 - L1ME3A LINE L1 -578 6084 5522 195 235 0 0 chr11 30529653 30529704 -120253849 + (TATATG)n Simple_repeat Simple_repeat 4 54 0 234 261 23 0 chr11 30529704 30529792 -120253761 - L1MC4 LINE L1 -1339 6703 6614 * 243 214 71 0 chr11 30529716 30529800 -120253753 + L1MC4 LINE L1 6614 6703 -1339 * 265 229 0 62 chr11 30529796 30529892 -120253661 + L1MC4 LINE L1 6614 6703 -1339 1859 279 93 43 chr11 30529925 30530602 -120252951 - L1ME3A LINE L1 -1163 5481 4839 1063 200 132 71 chr11 30530602 30530967 -120252586 - MLT1B LTR MaLR -3 387 1 1859 279 93 43 chr11 30530967 30531942 -120251611 - L1ME3A LINE L1 -1805 4839 3719 371 217 129 75 chr11 30531945 30532172 -120251381 + MLT1D LTR MaLR 8 265 -202 765 282 49 44 chr11 30532206 30532488 -120251065 - L1ME3A LINE L1 -3327 3317 3029 1651 180 3 23 chr11 30532488 30532793 -120250760 - AluSx SINE Alu -9 303 5 765 282 49 44 chr11 30532793 30533059 -120250494 - L1ME3A LINE L1 -3615 3029 2766 347 270 135 78 chr11 30533162 30533258 -120250295 - L1ME3A LINE L1 -4161 2664 2575 204 40 0 0 chr11 30533258 30533283 -120250270 + (TTA)n Simple_repeat Simple_repeat 2 26 0 347 270 135 78 chr11 30533283 30533361 -120250192 - L1ME3A LINE L1 -4250 2575 2503 371 298 72 33 chr11 30533361 30533542 -120250011 + MER5A DNA MER1_type 2 189 0 347 270 135 78 chr11 30533542 30533685 -120249868 - L1ME3A LINE L1 -4322 2503 2328 2526 143 7 49 chr11 30533749 30534196 -120249357 - MSTA LTR MaLR 0 428 1 520 334 31 70 chr11 30534203 30534691 -120248862 + HERVL LTR ERVL 3379 3847 -1807 270 286 27 54 chr11 30534785 30534970 -120248583 + L1MCc LINE L1 142 321 -6102 256 272 123 0 chr11 30535018 30535099 -120248454 + L1MCc LINE L1 816 906 -5517 994 114 54 0 chr11 30535109 30535258 -120248295 + MER57B LTR ERV1 1 157 -277 979 122 48 0 chr11 30535270 30535417 -120248136 + MER57B LTR ERV1 6 159 -275 389 219 62 0 chr11 30535472 30535568 -120247985 + L1MCc LINE L1 1121 1222 -5201 351 359 23 0 chr11 30535676 30535932 -120247621 - L1ME3A LINE L1 -4722 1922 1661 471 279 44 103 chr11 30535932 30536332 -120247221 - L1ME3A LINE L1 -4881 1763 1275 1751 175 10 3 chr11 30536332 30536629 -120246924 + AluJb SINE Alu 4 302 -10 471 279 44 103 chr11 30536629 30536682 -120246871 - L1ME3A LINE L1 -5369 1275 1220 30 0 0 0 chr11 30537905 30537935 -120245618 + AT_rich Low_complexity Low_complexity 1 30 0 868 166 20 85 chr11 30538080 30538279 -120245274 - MER5A DNA MER1_type -1 188 3 404 215 19 37 chr11 30540230 30540337 -120243216 - MER58B DNA MER1_type -8 333 229 254 312 117 39 chr11 30540337 30540491 -120243062 + MIR SINE MIR 37 202 -60 * 277 284 160 31 chr11 30540471 30540665 -120242888 - MIR SINE MIR -16 246 28 336 361 33 0 chr11 30543226 30543348 -120240205 + L3 LINE CR1 1430 1555 -22 2163 111 0 0 chr11 30544648 30544937 -120238616 + AluSc SINE Alu 1 289 -20 347 312 173 10 chr11 30544953 30545155 -120238398 - MIR SINE MIR -14 248 14 399 298 30 66 chr11 30546270 30546468 -120237085 + MIR SINE MIR 1 191 -71 467 293 50 50 chr11 30547498 30547679 -120235874 - MIR SINE MIR -54 208 28 195 139 0 0 chr11 30548025 30548061 -120235492 + (CAT)n Simple_repeat Simple_repeat 3 38 0 267 265 15 0 chr11 30548311 30548379 -120235174 + CT-rich Low_complexity Low_complexity 1 69 0 455 301 122 41 chr11 30548380 30548997 -120234556 - L2 LINE L2 -2 3311 2630 753 333 16 0 chr11 30550585 30550828 -120232725 + MIR SINE MIR 16 262 0 681 336 154 0 chr11 30550915 30551266 -120232287 - LTR16C LTR ERVL -13 478 74 1957 124 10 33 chr11 30551601 30551900 -120231653 - AluSq SINE Alu -21 292 1 231 133 0 0 chr11 30552601 30552646 -120230907 + (TTCA)n Simple_repeat Simple_repeat 1 45 0 215 224 0 0 chr11 30553775 30553824 -120229729 + (TGAA)n Simple_repeat Simple_repeat 4 52 0 241 336 134 22 chr11 30554007 30554141 -120229412 - L2 LINE L2 -8 3264 3116 181 265 0 29 chr11 30554250 30554318 -120229235 + MIR SINE MIR 131 196 -66 292 283 26 26 chr11 30555428 30555541 -120228012 + L2 LINE L2 3201 3313 0 3836 153 13 19 chr11 30555852 30556127 -120227426 + L1PB3 LINE L1 5463 5738 -416 2378 96 0 0 chr11 30556127 30556429 -120227124 + AluSp SINE Alu 1 302 -11 3836 153 13 19 chr11 30556429 30556485 -120227068 + L1PB3 LINE L1 5738 5793 -361 957 42 0 0 chr11 30556485 30556603 -120226950 + (TA)n Simple_repeat Simple_repeat 1 118 0 3836 153 13 19 chr11 30556603 30556962 -120226591 + L1PB3 LINE L1 5793 6150 -4 1638 203 10 0 chr11 30557335 30557625 -120225928 + AluJb SINE Alu 1 293 -19 61 52 0 0 chr11 30557625 30557721 -120225832 + AT_rich Low_complexity Low_complexity 1 96 0 185 191 221 0 chr11 30557766 30557834 -120225719 + MIR SINE MIR 166 248 -14 321 296 91 55 chr11 30557926 30558125 -120225428 + MIR SINE MIR 48 253 -9 284 309 60 23 chr11 30558154 30558304 -120225249 - MIR SINE MIR -64 144 37 2500 68 0 0 chr11 30558305 30558612 -120224941 - AluY SINE Alu -4 307 1 495 238 43 55 chr11 30559401 30559565 -120223988 + MIR SINE MIR 31 192 -70 210 139 0 0 chr11 30559767 30559803 -120223750 + (TTCA)n Simple_repeat Simple_repeat 3 38 0 11732 24 1 4 chr11 30560155 30562300 -120221253 + L1PA3 LINE L1 4014 6155 0 1942 193 25 6 chr11 30562638 30562996 -120220557 + MLT1A1 LTR MaLR 1 365 0 25 0 0 0 chr11 30563070 30563095 -120220458 + AT_rich Low_complexity Low_complexity 1 25 0 372 276 51 0 chr11 30563619 30563717 -120219836 - L2 LINE L2 -3 3310 3208 277 265 40 99 chr11 30563699 30563850 -120219703 + MIR SINE MIR 95 236 -26 * 573 300 57 32 chr11 30565802 30566085 -120217468 + MLT1H LTR MaLR 1 290 -259 269 235 174 68 chr11 30566139 30566271 -120217282 + MLT1H LTR MaLR 396 541 -8 21 36 0 0 chr11 30566638 30566666 -120216887 + AT_rich Low_complexity Low_complexity 1 28 0 260 381 142 0 chr11 30566705 30566902 -120216651 - L3 LINE CR1 -1 1576 1352 198 400 40 32 chr11 30567081 30567206 -120216347 + L2 LINE L2 3111 3236 -36 325 313 208 5 chr11 30568042 30568234 -120215319 + MIR SINE MIR 24 254 -8 2687 131 19 2 chr11 30568234 30568655 -120214898 - MSTA LTR MaLR 0 428 1 536 340 42 5 chr11 30569426 30569641 -120213912 - MIR SINE MIR -11 251 29 736 220 40 0 chr11 30569658 30569808 -120213745 - MER58B DNA MER1_type -7 334 179 818 270 44 24 chr11 30570332 30570589 -120212964 + MIR SINE MIR 4 262 0 197 275 0 0 chr11 30570687 30570727 -120212826 - L2 LINE L2 -86 3186 3147 409 331 26 19 chr11 30571165 30571319 -120212234 + MIR SINE MIR 68 222 -40 2119 117 7 7 chr11 30571335 30571635 -120211918 - AluSx SINE Alu -12 300 1 1005 310 46 33 chr11 30571787 30572245 -120211308 + LTR16B LTR ERVL 1 464 0 201 330 21 21 chr11 30572699 30572796 -120210757 - MIR3 SINE MIR -30 178 82 368 212 27 58 chr11 30573449 30573682 -120209871 - Charlie7 DNA MER1_type 0 2612 39 953 240 147 57 chr11 30574060 30574569 -120208984 + MLT1H1 LTR MaLR 1 555 0 6803 60 13 0 chr11 30575371 30576806 -120206747 + L1PA6 LINE L1 4700 6140 -14 24813 64 6 4 chr11 30576806 30580920 -120202633 + L1PA6 LINE L1 2031 6154 0 189 0 0 0 chr11 30581865 30581886 -120201667 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 910 216 81 24 chr11 30581893 30582226 -120201327 + L1MC5 LINE L1 7298 7649 -312 34 42 0 0 chr11 30582250 30582298 -120201255 + AT_rich Low_complexity Low_complexity 1 48 0 330 302 70 50 chr11 30583890 30584190 -120199363 - MLT1J1 LTR MaLR -2 417 101 32 0 0 0 chr11 30584294 30584326 -120199227 + AT_rich Low_complexity Low_complexity 1 32 0 2125 172 3 3 chr11 30585163 30585529 -120198024 + MER47A DNA MER2_type 1 366 0 600 220 0 0 chr11 30585770 30585888 -120197665 + L1MA5 LINE L1 6137 6254 -46 1373 199 11 53 chr11 30585888 30586170 -120197383 + AluJo SINE Alu 1 270 -42 222 37 0 0 chr11 30586170 30586197 -120197356 + (CA)n Simple_repeat Simple_repeat 2 28 0 294 183 0 0 chr11 30586203 30586263 -120197290 + L1MA6 LINE L1 6241 6300 0 405 144 56 0 chr11 30586300 30586390 -120197163 + L1MB7 LINE L1 6083 6177 -7 186 236 382 11 chr11 30587622 30587711 -120195842 - L2 LINE L2 0 3272 3151 21 0 0 0 chr11 30587733 30587754 -120195799 + AT_rich Low_complexity Low_complexity 1 21 0 216 0 0 0 chr11 30588814 30588838 -120194715 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1121 290 74 15 chr11 30589622 30590025 -120193528 - LTR16B LTR ERVL 0 464 38 481 300 30 0 chr11 30590080 30590280 -120193273 - HERV16 LTR ERVL -2 4994 4789 411 363 75 30 chr11 30590284 30590752 -120192801 - HERVL LTR ERVL -370 5284 4796 272 331 66 33 chr11 30591478 30591659 -120191894 + MIR SINE MIR 20 206 -56 1317 236 68 95 chr11 30592247 30592807 -120190746 + MLT2E LTR ERVL 69 613 -15 332 311 48 0 chr11 30593046 30593149 -120190404 - MIR3 SINE MIR -31 177 70 24 67 0 0 chr11 30593912 30593957 -120189596 + AT_rich Low_complexity Low_complexity 1 45 0 429 278 8 60 chr11 30594060 30594193 -120189360 + L2 LINE L2 3147 3272 0 359 338 54 27 chr11 30595488 30595710 -120187843 - MIR SINE MIR -34 228 1 1319 204 93 41 chr11 30595797 30596259 -120187294 + Charlie4a DNA MER1_type 23 508 0 2292 136 3 9 chr11 30596269 30596608 -120186945 - MER1B DNA MER1_type 0 337 1 396 0 0 0 chr11 30596837 30596881 -120186672 + (TG)n Simple_repeat Simple_repeat 2 45 0 595 342 30 19 chr11 30598691 30598931 -120184622 - MIR SINE MIR -20 242 3 181 344 16 0 chr11 30599830 30599891 -120183662 + L2 LINE L2 2495 2556 -758 315 192 0 0 chr11 30600904 30600977 -120182576 + GA-rich Low_complexity Low_complexity 2 74 0 288 244 47 47 chr11 30601136 30601308 -120182245 + Charlie7 DNA MER1_type 2440 2611 -1 203 298 212 58 chr11 30602141 30602467 -120181086 + L2 LINE L2 2938 3313 0 605 245 82 33 chr11 30604032 30604216 -120179337 + MIR SINE MIR 5 197 -65 424 331 63 56 chr11 30604274 30604353 -120179200 - MLT1J LTR MaLR -92 419 342 1904 160 3 40 chr11 30604353 30604703 -120178850 + MER1B DNA MER1_type 1 337 0 424 331 63 56 chr11 30604703 30604910 -120178643 - MLT1J LTR MaLR -169 342 131 1758 186 3 0 chr11 30605251 30605542 -120178011 - AluJb SINE Alu -16 296 5 1038 178 18 32 chr11 30605722 30605941 -120177612 + MER93b LTR ERV1 1 216 -157 13192 178 46 23 chr11 30605942 30606295 -120177258 - L1PB1 LINE L1 -5 6862 6519 303 28 0 0 chr11 30606295 30606331 -120177222 + (TG)n Simple_repeat Simple_repeat 2 37 0 13192 178 46 23 chr11 30606331 30607646 -120175907 - L1PB1 LINE L1 -348 6519 5236 261 0 0 0 chr11 30607646 30607675 -120175878 + (TTTTA)n Simple_repeat Simple_repeat 4 32 0 13192 178 46 23 chr11 30607675 30610451 -120173102 - L1PB1 LINE L1 -1631 5236 2013 459 143 0 0 chr11 30610451 30610528 -120173025 - MADE1 DNA Mariner -3 77 1 13192 178 46 23 chr11 30610528 30611571 -120171982 - L1PB1 LINE L1 -4854 2013 995 874 166 30 24 chr11 30611620 30611789 -120171764 + MER93b LTR ERV1 204 373 0 2136 191 5 0 chr11 30612170 30612548 -120171005 - MER57A LTR ERV1 0 403 24 524 72 0 0 chr11 30612548 30612617 -120170936 - MER57A LTR ERV1 -327 76 8 2190 233 99 31 chr11 30613993 30614986 -120168567 - MER63D DNA MER1_type 0 1061 2 442 294 0 37 chr11 30615700 30615836 -120167717 - L2 LINE L2 -1 3312 3182 642 338 20 10 chr11 30615976 30616180 -120167373 + L2 LINE L2 2846 3051 -262 1371 181 35 0 chr11 30616216 30616469 -120167084 + MLT2C2 LTR ERVL 1 262 -202 7130 72 167 1 chr11 30616469 30617517 -120166036 + MER11B LTR ERVK 1 1222 -14 453 246 0 0 chr11 30617535 30617635 -120165918 + MLT2C1 LTR ERVL 258 424 -40 1813 102 21 9 chr11 30617862 30618217 -120165336 - LTR7 LTR ERV1 -38 412 1 2535 105 46 30 chr11 30618217 30618655 -120164898 - HERVH LTR ERV1 0 7713 7269 * 5477 98 5 19 chr11 30618638 30619437 -120164116 - HERVH LTR ERV1 -2693 5020 4233 1045 157 52 4 chr11 30619439 30619669 -120163884 + L1MA4 LINE L1 6054 6294 -6 420 337 17 35 chr11 30619891 30620063 -120163490 - MLT1K LTR MaLR -338 250 82 184 396 0 22 chr11 30620224 30620315 -120163238 + MIR SINE MIR 20 108 -100 1544 233 60 35 chr11 30620385 30620836 -120162717 + MLT1C LTR MaLR 1 462 -5 238 333 145 0 chr11 30620858 30620975 -120162578 + MIR SINE MIR 117 250 -12 196 360 29 69 chr11 30621030 30621205 -120162348 - MIR SINE MIR -55 207 40 378 289 87 18 chr11 30621316 30621496 -120162057 - MIR SINE MIR -42 220 27 307 339 45 0 chr11 30622279 30622391 -120161162 - L2 LINE L2 -11 3302 3186 222 233 192 14 chr11 30622389 30622462 -120161091 - MIR SINE MIR -21 241 156 * 238 305 25 25 chr11 30622791 30622909 -120160644 + LTR67 LTR ERVL 434 551 -6 2015 176 30 18 chr11 30622976 30623374 -120160179 + MER57A LTR ERV1 1 403 0 7197 114 139 92 chr11 30624569 30626191 -120157362 + pTR5 LTR ERV1 742 2438 0 307 274 14 0 chr11 30626380 30626453 -120157100 + MER41D LTR ERV1 396 469 -88 26 0 0 0 chr11 30626757 30626783 -120156770 + AT_rich Low_complexity Low_complexity 1 26 0 11453 197 70 29 chr11 30626793 30628289 -120155264 - L1MA7 LINE L1 -24 6471 5037 1817 139 118 21 chr11 30628289 30628621 -120154932 - THE1B LTR MaLR 0 364 1 11630 95 10 1 chr11 30628622 30630186 -120153367 - THE1B-int LTR MaLR -1 1579 1 1840 115 140 19 chr11 30630186 30630508 -120153045 - THE1B LTR MaLR 0 364 4 11453 197 70 29 chr11 30630508 30632214 -120151339 - L1MA7 LINE L1 -1458 5037 3040 1706 162 3 40 chr11 30632214 30632511 -120151042 - AluJo SINE Alu -26 286 1 11453 197 70 29 chr11 30632511 30633504 -120150049 - L1MA7 LINE L1 -3455 3040 2089 1322 164 9 0 chr11 30633574 30633793 -120149760 - 7SLRNA srpRNA srpRNA -92 228 8 4981 242 64 73 chr11 30633803 30636192 -120147361 - L1MA7 LINE L1 -4174 2177 1 253 290 62 80 chr11 30636242 30636418 -120147135 + MIR SINE MIR 64 236 -26 986 130 45 39 chr11 30636480 30636679 -120146874 - THE1C LTR MaLR 0 375 199 381 158 0 0 chr11 30636679 30636761 -120146792 + GA-rich Low_complexity Low_complexity 2 83 0 1003 150 77 21 chr11 30636761 30636814 -120146739 - THE1C LTR MaLR -160 268 219 1071 117 0 0 chr11 30636814 30636994 -120146559 + (GA)n Simple_repeat Simple_repeat 1 180 0 1003 150 77 21 chr11 30636994 30637186 -120146367 - THE1C LTR MaLR -209 219 1 857 172 91 122 chr11 30637529 30637849 -120145704 + MLT1A1 LTR MaLR 1 310 -55 341 192 25 0 chr11 30638725 30638813 -120144740 + MSTD LTR MaLR 277 396 0 2879 13 0 0 chr11 30638847 30639165 -120144388 + AluYb8 SINE Alu 1 318 0 360 333 104 0 chr11 30639394 30639538 -120144015 - MIR SINE MIR -4 258 100 5231 234 45 6 chr11 30639935 30641345 -120142208 - L1PA15 LINE L1 -2268 3878 2414 6085 195 19 6 chr11 30641348 30642424 -120141129 + L1PA15 LINE L1 3877 4937 -1228 2046 148 0 3 chr11 30642424 30642603 -120140950 - AluSq SINE Alu -4 309 130 189 0 0 0 chr11 30642603 30642624 -120140929 + (TA)n Simple_repeat Simple_repeat 1 21 0 2046 148 0 3 chr11 30642624 30642754 -120140799 - AluSq SINE Alu -183 130 1 6085 195 19 6 chr11 30642754 30643938 -120139615 + L1PA15 LINE L1 4937 6164 -1 1587 155 126 32 chr11 30644030 30644371 -120139182 - THE1C LTR MaLR 0 375 3 27 96 0 0 chr11 30644761 30644844 -120138709 + AT_rich Low_complexity Low_complexity 1 83 0 637 202 50 0 chr11 30646151 30646270 -120137283 - FLAM_A SINE Alu -8 125 1 355 396 114 0 chr11 30646591 30646793 -120136760 + MER115 DNA AcHobo 150 374 -319 1603 251 50 7 chr11 30647363 30647806 -120135747 + MLT1C LTR MaLR 6 467 0 382 289 75 6 chr11 30648034 30648193 -120135360 - MIR SINE MIR -41 221 52 2408 100 0 0 chr11 30648291 30648601 -120134952 + AluSg SINE Alu 1 310 0 1970 117 94 26 chr11 30648977 30649318 -120134235 - THE1B LTR MaLR 0 364 1 1691 209 34 75 chr11 30649907 30649964 -120133589 - MER90 LTR ERV1 0 614 556 423 0 0 0 chr11 30649964 30650011 -120133542 + (TA)n Simple_repeat Simple_repeat 2 48 0 1691 209 34 75 chr11 30650011 30650176 -120133377 - MER90 LTR ERV1 -58 556 386 2057 92 0 0 chr11 30650176 30650438 -120133115 - AluSq SINE Alu -10 303 42 1691 209 34 75 chr11 30650438 30650655 -120132898 - MER90 LTR ERV1 -228 386 192 186 43 0 0 chr11 30650657 30650680 -120132873 + (TTG)n Simple_repeat Simple_repeat 2 24 0 461 185 59 92 chr11 30650705 30650824 -120132729 - AluJo SINE Alu -93 219 105 782 215 25 12 chr11 30650839 30651002 -120132551 - MER90 LTR ERV1 -446 168 4 432 337 49 6 chr11 30651580 30651743 -120131810 - MIR SINE MIR -73 189 20 2303 97 0 31 chr11 30651743 30652084 -120131469 - AluY SINE Alu 0 331 1 23 33 0 0 chr11 30652927 30652957 -120130596 + AT_rich Low_complexity Low_complexity 1 30 0 270 0 0 0 chr11 30653223 30653253 -120130300 + (A)n Simple_repeat Simple_repeat 1 30 0 21 0 0 0 chr11 30653609 30653630 -120129923 + AT_rich Low_complexity Low_complexity 1 21 0 233 157 0 39 chr11 30653649 30653700 -120129853 + GA-rich Low_complexity Low_complexity 6 54 0 513 316 24 53 chr11 30654307 30654513 -120129040 + MIR SINE MIR 63 262 0 226 286 188 18 chr11 30654927 30655039 -120128514 + L2 LINE L2 3182 3312 -1 234 317 57 41 chr11 30655052 30655175 -120128378 + L2 LINE L2 3189 3313 0 5015 14 0 0 chr11 30655728 30656298 -120127255 - L1PA3 LINE L1 0 6155 5586 336 102 0 0 chr11 30656716 30656765 -120126788 + (CA)n Simple_repeat Simple_repeat 2 50 0 2081 126 0 0 chr11 30656807 30657093 -120126460 + AluSx SINE Alu 1 286 -26 310 275 123 14 chr11 30657315 30657453 -120126100 + MLT1I LTR MaLR 243 395 -14 277 375 84 21 chr11 30657516 30657753 -120125800 + L2 LINE L2 2722 2973 -341 207 339 17 0 chr11 30657985 30658044 -120125509 + L2 LINE L2 3204 3263 -9 379 361 13 13 chr11 30658502 30658660 -120124893 + MIR3 SINE MIR 30 187 -21 431 370 37 0 chr11 30658805 30658967 -120124586 + MIR SINE MIR 23 190 -72 * 438 287 120 12 chr11 30658966 30659133 -120124420 + L2 LINE L2 2394 2578 -736 920 261 27 37 chr11 30659252 30659620 -120123933 - MLT1A1 LTR MaLR 0 365 1 560 263 86 11 chr11 30659626 30659801 -120123752 - MIR SINE MIR -70 192 5 306 348 45 0 chr11 30659876 30659988 -120123565 + MIR SINE MIR 18 134 -128 673 336 52 0 chr11 30660161 30660432 -120123121 - LTR33 LTR ERVL -225 296 12 589 314 30 30 chr11 30661649 30661864 -120121689 - MIR SINE MIR -19 243 27 323 324 182 35 chr11 30662853 30663023 -120120530 + MER91A DNA MER1_type 1 195 -1 476 298 66 17 chr11 30663973 30664154 -120119399 + MIR SINE MIR 73 262 0 294 173 0 0 chr11 30664521 30664573 -120118980 + L2 LINE L2 3261 3312 -1 275 318 62 54 chr11 30664918 30665047 -120118506 - MIR SINE MIR -58 150 21 184 306 0 0 chr11 30665971 30666020 -120117533 + L3 LINE CR1 1528 1576 -1 197 277 0 0 chr11 30666115 30666162 -120117391 - L2 LINE L2 -33 3239 3193 270 332 49 40 chr11 30666612 30666838 -120116715 - LTR33A LTR ERVL -7 516 289 513 246 31 47 chr11 30666898 30667089 -120116464 - LTR33A LTR ERVL -335 188 1 249 317 93 65 chr11 30667323 30667569 -120115984 - MIR SINE MIR 0 262 10 6517 200 151 16 chr11 30667586 30669132 -120114421 - MER52A LTR ERV1 0 1755 1 270 279 73 0 chr11 30669174 30669242 -120114311 + MIR SINE MIR 12 84 -178 1518 226 87 24 chr11 30669254 30669669 -120113884 - MLT1D LTR MaLR 0 505 65 1563 85 0 10 chr11 30669675 30669876 -120113677 + AluY SINE Alu 1 199 -112 220 382 26 0 chr11 30670177 30670253 -120113300 + L2 LINE L2 3204 3281 -32 1567 188 95 25 chr11 30670259 30670690 -120112863 - MLT1C LTR MaLR -1 466 6 2303 143 20 3 chr11 30673520 30673878 -120109675 - THE1B LTR MaLR 0 364 1 1436 231 81 14 chr11 30673960 30674393 -120109160 + MLT1C LTR MaLR 6 467 0 193 301 87 29 chr11 30675120 30675223 -120108330 + MER5B DNA MER1_type 2 110 -68 245 246 0 18 chr11 30675141 30675198 -120108355 - MER5A DNA MER1_type -25 164 109 403 348 66 49 chr11 30675377 30675785 -120107768 + L2 LINE L2 2895 3309 -4 1357 183 59 83 chr11 30676867 30677310 -120106243 + MSTB1 LTR MaLR 1 432 0 41242 48 3 2 chr11 30677777 30683927 -120099626 - L1PA4 LINE L1 0 6155 3 232 310 14 0 chr11 30684424 30684495 -120099058 - MIR3 SINE MIR -7 201 130 256 282 141 66 chr11 30685027 30685268 -120098285 - MLT1J LTR MaLR -152 359 101 207 258 0 32 chr11 30685350 30685412 -120098141 + MIR SINE MIR 203 262 0 343 316 26 57 chr11 30685441 30685690 -120097863 - MIR SINE MIR -20 242 5 198 0 0 0 chr11 30685696 30685718 -120097835 + (T)n Simple_repeat Simple_repeat 1 22 0 320 339 116 20 chr11 30686740 30687041 -120096512 - L2 LINE L2 -2 3311 2982 679 208 0 0 chr11 30689113 30689243 -120094310 + MLT1F1 LTR MaLR 5 134 -433 754 227 0 0 chr11 30689243 30689375 -120094178 + FLAM_A SINE Alu 1 132 -10 1476 261 89 12 chr11 30689378 30689795 -120093758 + MLT1F1 LTR MaLR 119 567 0 2452 103 3 0 chr11 30689994 30690306 -120093247 + AluSp SINE Alu 1 313 0 401 297 80 0 chr11 30690390 30690528 -120093025 + MIR SINE MIR 4 152 -110 312 120 0 0 chr11 30690903 30690953 -120092600 + (CA)n Simple_repeat Simple_repeat 1 50 0 969 198 50 0 chr11 30691805 30692007 -120091546 - MER20 DNA MER1_type -4 215 4 437 333 67 13 chr11 30692022 30692247 -120091306 - MLT1K LTR MaLR -35 553 317 727 173 0 43 chr11 30692290 30692429 -120091124 + AluJb SINE Alu 164 296 -16 483 248 14 43 chr11 30693754 30693895 -120089658 + MIR SINE MIR 124 260 -2 342 267 32 72 chr11 30694193 30694382 -120089171 - MIR SINE MIR -61 147 3 259 369 10 0 chr11 30695764 30695867 -120087686 + MIR3 SINE MIR 54 157 -51 526 275 110 0 chr11 30696045 30696227 -120087326 - L2 LINE L2 0 3313 3112 27 29 0 0 chr11 30696871 30696905 -120086648 + AT_rich Low_complexity Low_complexity 1 34 0 2597 215 43 38 chr11 30696921 30697665 -120085888 + Charlie1a DNA MER1_type 1 748 -707 4203 189 58 19 chr11 30697665 30699049 -120084504 - L1MC2 LINE L1 -6 6338 4907 301 257 37 29 chr11 30699057 30699193 -120084360 - L1MC2 LINE L1 -1317 4829 4693 * 7136 32 3 3 chr11 30699189 30700091 -120083462 - L1PA3 LINE L1 0 6155 5254 * 12519 28 5 0 chr11 30700082 30701645 -120081908 + L1PA3 LINE L1 3693 5263 -883 984 253 32 42 chr11 30701645 30702148 -120081405 - L1MC2 LINE L1 -1444 4702 4205 410 216 0 23 chr11 30702148 30702324 -120081229 + (TA)n Simple_repeat Simple_repeat 1 172 0 2756 257 82 4 chr11 30702349 30703381 -120080172 - L1MC2 LINE L1 -1945 4201 3089 1274 236 78 17 chr11 30703402 30703746 -120079807 + MLT1A1 LTR MaLR 1 365 0 1844 215 43 53 chr11 30703748 30704441 -120079112 + Charlie1a DNA MER1_type 767 1452 -3 573 258 63 0 chr11 30704452 30704611 -120078942 - MER58B DNA MER1_type 0 341 173 185 116 0 47 chr11 30705039 30705082 -120078471 + (CAA)n Simple_repeat Simple_repeat 2 42 0 619 243 33 0 chr11 30705340 30705492 -120078061 - MER63A DNA MER1_type -1 209 53 408 238 0 0 chr11 30705833 30705938 -120077615 + (CATATA)n Simple_repeat Simple_repeat 1 105 0 334 273 63 49 chr11 30706037 30706092 -120077461 - L2 LINE L2 -776 2538 2485 1813 154 3 39 chr11 30706092 30706456 -120077097 + L1PA14 LINE L1 5811 6161 0 334 273 63 49 chr11 30706456 30706543 -120077010 - L2 LINE L2 -829 2485 2394 27163 47 1 2 chr11 30706569 30711022 -120072531 + L1PA3 LINE L1 3 4445 -1701 7365 30 8 0 chr11 30711022 30711896 -120071657 + L1PA3 LINE L1 5275 6155 0 273 304 116 7 chr11 30711903 30712041 -120071512 - L2 LINE L2 -940 2374 2222 180 111 0 0 chr11 30712342 30712369 -120071184 + (A)n Simple_repeat Simple_repeat 1 27 0 23 0 0 0 chr11 30712556 30712579 -120070974 + AT_rich Low_complexity Low_complexity 1 23 0 521 243 105 52 chr11 30713235 30713445 -120070108 + MIR SINE MIR 15 235 -27 206 206 29 15 chr11 30714331 30714399 -120069154 + (TATATG)n Simple_repeat Simple_repeat 4 72 0 190 227 45 0 chr11 30714449 30714537 -120069016 + (TATATG)n Simple_repeat Simple_repeat 5 96 0 1363 119 38 17 chr11 30714925 30715160 -120068393 + L1P4 LINE L1 5370 5609 -552 240 257 14 29 chr11 30715627 30715697 -120067856 + GA-rich Low_complexity Low_complexity 4 72 0 347 240 188 0 chr11 30716805 30716901 -120066652 - L2 LINE L2 0 3272 3159 1068 209 15 5 chr11 30717480 30717686 -120065867 - AluJb SINE Alu -18 294 87 181 73 24 49 chr11 30717712 30717753 -120065800 + (GGAA)n Simple_repeat Simple_repeat 3 42 0 589 235 140 17 chr11 30718576 30718755 -120064798 + MIR SINE MIR 28 228 -34 200 228 0 35 chr11 30718804 30718861 -120064692 + GA-rich Low_complexity Low_complexity 6 60 0 251 359 129 6 chr11 30718935 30719105 -120064448 - MIR SINE MIR -55 207 17 284 276 45 21 chr11 30719302 30719419 -120064134 - MIR SINE MIR -94 114 3 189 0 0 0 chr11 30719932 30719953 -120063600 + (TTCC)n Simple_repeat Simple_repeat 1 21 0 651 318 106 42 chr11 30720136 30720608 -120062945 + LTR33 LTR ERVL 12 513 -8 286 273 192 6 chr11 30720693 30720865 -120062688 + L2 LINE L2 2607 2810 -504 844 298 89 50 chr11 30720903 30721306 -120062247 - LTR16C LTR ERVL -3 488 70 296 321 88 22 chr11 30721678 30721815 -120061738 + MIR SINE MIR 117 262 0 19431 158 46 18 chr11 30722790 30730279 -120053274 - L1MA1 LINE L1 -4 7717 16 590 280 40 44 chr11 30730605 30730855 -120052698 + MIR SINE MIR 13 261 -1 399 221 93 43 chr11 30731791 30731931 -120051622 - MLT1H LTR MaLR 0 549 403 240 353 39 10 chr11 30733235 30733337 -120050216 + MLT1J LTR MaLR 94 198 -313 855 55 0 0 chr11 30733354 30733463 -120050090 + (TA)n Simple_repeat Simple_repeat 2 110 0 192 77 0 0 chr11 30733466 30733492 -120050061 + (GA)n Simple_repeat Simple_repeat 2 27 0 737 275 15 25 chr11 30733543 30733743 -120049810 + MLT1J1 LTR MaLR 231 428 -18 450 0 0 0 chr11 30733759 30733809 -120049744 + (TA)n Simple_repeat Simple_repeat 1 50 0 1153 309 55 23 chr11 30734026 30734501 -120049052 - L2 LINE L2 -20 3293 2804 612 270 108 67 chr11 30734510 30734944 -120048609 - LTR16A1 LTR ERVL -4 453 2 669 323 32 42 chr11 30735321 30735516 -120048037 - ERVL LTR ERVL -676 5088 4896 608 215 138 36 chr11 30735516 30735711 -120047842 - MER58C DNA MER1_type 0 215 1 669 323 32 42 chr11 30735711 30735825 -120047728 - ERVL LTR ERVL -868 4896 4782 305 333 0 0 chr11 30736200 30736290 -120047263 - L1MC4 LINE L1 -1339 6703 6614 412 224 43 9 chr11 30736290 30736406 -120047147 - MER53 DNA DNA -69 120 1 284 349 8 31 chr11 30736554 30736683 -120046870 + L2 LINE L2 2946 3071 -201 187 271 57 29 chr11 30738490 30738560 -120044993 + L2 LINE L2 3241 3312 -1 22729 178 25 27 chr11 30738856 30742278 -120041275 + L1PA10 LINE L1 9 3434 -3049 180 77 0 0 chr11 30742278 30742304 -120041249 + (CAA)n Simple_repeat Simple_repeat 3 28 0 22729 178 25 27 chr11 30742304 30743072 -120040481 + L1PA10 LINE L1 3434 4202 -2281 2454 139 0 6 chr11 30743072 30743438 -120040115 + THE1B LTR MaLR 1 364 0 9772 122 37 38 chr11 30743438 30745020 -120038533 + THE1B-int LTR MaLR 1 1580 0 2557 107 28 6 chr11 30745020 30745376 -120038177 + THE1B LTR MaLR 1 364 0 22729 178 25 27 chr11 30745376 30747664 -120035889 + L1PA10 LINE L1 4199 6483 0 200 132 189 0 chr11 30748193 30748246 -120035307 + L2 LINE L2 3201 3263 -9 2507 157 25 0 chr11 30748340 30748741 -120034812 - LTR57 LTR ERVL 0 411 1 230 79 0 26 chr11 30749098 30749136 -120034417 + (CACCAT)n Simple_repeat Simple_repeat 2 38 0 362 318 134 22 chr11 30749137 30749316 -120034237 - MIR SINE MIR -8 254 56 24 32 0 0 chr11 30751986 30752017 -120031536 + AT_rich Low_complexity Low_complexity 1 31 0 5013 171 15 9 chr11 30752017 30753489 -120030064 - L1PA16 LINE L1 -35 6131 4653 3739 220 10 1 chr11 30753485 30754347 -120029206 + L1PA16 LINE L1 3789 4658 -1488 * 283 267 104 0 chr11 30754351 30754439 -120029114 + MIR SINE MIR 50 146 -67 288 257 78 64 chr11 30754758 30754946 -120028607 - MIR SINE MIR -46 216 31 230 265 0 0 chr11 30755146 30755195 -120028358 - MIR SINE MIR -140 122 74 528 129 47 6 chr11 30755294 30755465 -120028088 + (TA)n Simple_repeat Simple_repeat 1 178 0 211 335 13 42 chr11 30755631 30755818 -120027735 + L2 LINE L2 2795 2977 -336 356 288 62 25 chr11 30755864 30756024 -120027529 - MIR SINE MIR -80 182 17 360 342 136 26 chr11 30756479 30756906 -120026647 - L2 LINE L2 -2 3311 2838 337 319 34 0 chr11 30756911 30757030 -120026523 - L2 LINE L2 0 3313 3191 210 275 220 28 chr11 30757066 30757175 -120026378 - L2 LINE L2 -508 2806 2677 1861 178 55 59 chr11 30757787 30758243 -120025310 + L1MB5 LINE L1 5662 6115 -59 25 75 0 0 chr11 30758334 30758387 -120025166 + AT_rich Low_complexity Low_complexity 1 53 0 27 29 0 0 chr11 30758531 30758565 -120024988 + AT_rich Low_complexity Low_complexity 1 34 0 415 331 25 6 chr11 30758814 30758974 -120024579 - MER117 DNA MER1_type -32 165 3 441 0 0 0 chr11 30759794 30759843 -120023710 + (CA)n Simple_repeat Simple_repeat 1 49 0 4531 193 58 46 chr11 30759942 30762046 -120021507 + L1MB1 LINE L1 4010 6142 -26 237 189 158 11 chr11 30762058 30762153 -120021400 + L1ME1 LINE L1 1037 1145 -4968 2737 111 54 5 chr11 30762299 30762722 -120020831 + MLT2A1 LTR ERVL 1 444 0 439 256 34 54 chr11 30762800 30763030 -120020523 + L1M4 LINE L1 1610 1960 -4256 301 221 7 114 chr11 30763037 30763177 -120020376 + L1M4 LINE L1 4645 4769 -1446 11500 231 55 22 chr11 30763178 30768671 -120014882 + L1P4 LINE L1 111 5987 -415 884 194 20 20 chr11 30768673 30768869 -120014684 - MER61A LTR ERV1 -147 196 1 975 199 35 0 chr11 30769080 30769281 -120014272 + L1ME1 LINE L1 1220 1427 -4790 1005 202 54 32 chr11 30769283 30769678 -120013875 + L1ME1 LINE L1 5165 5565 -688 1412 157 17 13 chr11 30769678 30769914 -120013639 + AluSx SINE Alu 63 299 -13 1599 252 47 35 chr11 30769935 30770531 -120013022 + L1ME1 LINE L1 5617 6219 -16 21 36 0 0 chr11 30770789 30770817 -120012736 + AT_rich Low_complexity Low_complexity 1 28 0 297 237 149 35 chr11 30772455 30772569 -120010984 - MLT1L LTR MaLR -488 127 1 232 235 0 0 chr11 30772595 30772646 -120010907 + (CTA)n Simple_repeat Simple_repeat 3 53 0 462 274 0 0 chr11 30773451 30773557 -120009996 - MIR SINE MIR -3 259 154 1170 301 41 12 chr11 30774045 30774460 -120009093 - LTR16A LTR ERVL -6 444 18 197 250 0 67 chr11 30774879 30774939 -120008614 - L3 LINE CR1 -173 1404 1349 252 265 0 48 chr11 30774965 30775048 -120008505 + MER5B DNA MER1_type 21 99 -79 184 264 64 96 chr11 30775277 30775402 -120008151 - L3 LINE CR1 -415 1162 1042 268 256 68 51 chr11 30775664 30775781 -120007772 + L2 LINE L2 3190 3308 -5 1307 231 44 51 chr11 30776479 30776770 -120006783 - MLT1E1 LTR MaLR 0 654 275 1645 196 3 23 chr11 30776770 30777071 -120006482 - AluJo SINE Alu -17 295 1 1307 231 44 51 chr11 30777071 30777243 -120006310 - MLT1E1 LTR MaLR -379 275 103 291 270 151 13 chr11 30777220 30777379 -120006174 - MLT1E LTR MaLR -406 187 7 * 679 254 28 0 chr11 30777700 30777842 -120005711 - MER5A DNA MER1_type -1 188 43 269 345 66 30 chr11 30778639 30778836 -120004717 + MERVL LTR ERVL 3 206 -4790 669 318 60 37 chr11 30779178 30779694 -120003859 + MERVL LTR ERVL 1772 2241 -3244 685 348 63 3 chr11 30779775 30780108 -120003445 - HERVL LTR ERVL -1258 4396 4044 595 309 41 38 chr11 30780474 30780794 -120002759 + LTR16C LTR ERVL 169 489 -2 5081 23 0 2 chr11 30780800 30781415 -120002138 - L1PA4 LINE L1 -756 5390 4777 6520 21 9 0 chr11 30781415 30782176 -120001377 + L1PA4 LINE L1 5382 6151 -4 301 301 71 18 chr11 30782690 30782803 -120000750 - L2 LINE L2 -2 3311 3193 247 267 33 83 chr11 30783221 30783341 -120000212 - L2 LINE L2 -2 3270 3157 1613 185 17 3 chr11 30783341 30783639 -119999914 - AluJb SINE Alu -10 302 1 411 306 16 0 chr11 30783773 30783897 -119999656 + MIR SINE MIR 2 127 -135 5837 94 25 2 chr11 30783900 30785629 -119997924 - L1PA13 LINE L1 -19 6144 4407 230 179 36 0 chr11 30785639 30785695 -119997858 + LTR37A LTR ERV1 369 426 0 202 317 0 24 chr11 30787133 30787215 -119996338 - MIR SINE MIR 0 262 183 276 143 16 48 chr11 30787751 30787814 -119995739 + HERVFH21 LTR ERV1 3421 3481 -3048 457 298 25 26 chr11 30788601 30788806 -119994747 - MER74A LTR ERVL -18 604 339 447 252 128 64 chr11 30789029 30789247 -119994306 - MLT1L LTR MaLR -19 596 365 261 292 22 11 chr11 30789310 30789399 -119994154 - MLT1L LTR MaLR -525 90 1 279 282 58 51 chr11 30790619 30790702 -119992851 - LTR33A LTR ERVL -24 499 413 2110 117 7 13 chr11 30790702 30791001 -119992552 + AluSx SINE Alu 1 297 -15 279 282 58 51 chr11 30791001 30791073 -119992480 - LTR33A LTR ERVL -110 413 343 235 244 37 24 chr11 30791056 30791138 -119992415 - LTR50 LTR ERVL -334 461 379 * 597 224 172 62 chr11 30791387 30791806 -119991747 + MER4C LTR ERV1 1 465 0 525 236 181 20 chr11 30791810 30791998 -119991555 + MER4C-int LTR ERV1 2 158 -6440 207 0 0 0 chr11 30791998 30792021 -119991532 + (A)n Simple_repeat Simple_repeat 1 23 0 525 236 181 20 chr11 30792021 30792121 -119991432 + MER4C-int LTR ERV1 158 429 -6169 656 115 95 54 chr11 30792434 30792582 -119990971 + MER4C-int LTR ERV1 994 1147 -5184 234 319 14 0 chr11 30792636 30792708 -119990845 + tRNA-Glu-GAG tRNA tRNA 3 75 0 360 174 101 46 chr11 30792710 30792819 -119990734 + MER4C-int LTR ERV1 1285 1399 -4932 448 281 27 0 chr11 30793001 30793147 -119990406 + MER4C-int LTR ERV1 1820 1969 -4629 2227 200 69 109 chr11 30793206 30793930 -119989623 + LTR8A LTR ERV1 33 727 0 10668 161 62 56 chr11 30793930 30794258 -119989295 + MER4C-int LTR ERV1 1171 1496 -4835 1756 184 3 13 chr11 30794258 30794562 -119988991 - AluJb SINE Alu -11 301 1 10668 161 62 56 chr11 30794562 30797508 -119986045 + MER4C-int LTR ERV1 1496 5996 -335 913 212 5 0 chr11 30797661 30797850 -119985703 + MER4C-int LTR ERV1 6395 6584 -14 1007 183 58 133 chr11 30797863 30798366 -119985187 + MER4C LTR ERV1 1 465 0 1451 303 113 18 chr11 30798456 30799317 -119984236 + L2 LINE L2 2375 3309 -4 2179 112 13 13 chr11 30799472 30799785 -119983768 + AluSq SINE Alu 1 313 0 189 0 0 0 chr11 30799930 30799951 -119983602 + (T)n Simple_repeat Simple_repeat 1 21 0 1358 189 73 0 chr11 30800059 30800345 -119983208 + Tigger2 DNA MER2_type 2401 2707 -11 296 223 80 18 chr11 30800528 30800640 -119982913 - L1M4 LINE L1 -1496 4650 4532 439 351 32 20 chr11 30800766 30801014 -119982539 + HAL1 LINE L1 153 403 -2104 752 318 92 35 chr11 30802458 30802914 -119980639 + L2 LINE L2 2827 3308 -5 21 57 0 0 chr11 30803128 30803163 -119980390 + AT_rich Low_complexity Low_complexity 1 35 0 252 59 0 0 chr11 30803680 30803714 -119979839 + (CAT)n Simple_repeat Simple_repeat 1 34 0 2269 189 53 24 chr11 30804847 30805391 -119978162 - MER45B DNA AcHobo -1 1039 480 776 211 53 13 chr11 30805391 30805689 -119977864 + L1MB1 LINE L1 5795 6155 -13 5890 103 7 31 chr11 30805703 30807000 -119976553 + L1PA14 LINE L1 4285 5565 -596 1897 143 14 0 chr11 30807000 30807287 -119976266 + AluSx SINE Alu 4 294 -18 5890 103 7 31 chr11 30807287 30807869 -119975684 + L1PA14 LINE L1 5565 6160 -1 221 158 0 18 chr11 30807869 30807920 -119975633 + A-rich Low_complexity Low_complexity 11 60 0 1517 184 0 46 chr11 30807928 30808233 -119975320 + AluJb SINE Alu 6 296 -16 1553 284 72 2 chr11 30808234 30808667 -119974886 - MER45B DNA AcHobo -577 463 1 207 0 0 0 chr11 30808685 30808708 -119974845 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 22000 52 5 5 chr11 30808731 30813717 -119969836 - L1PA5 LINE L1 -4 6150 1041 7375 104 3 5 chr11 30813719 30814760 -119968793 + L1PA5 LINE L1 13 1051 -5095 197 337 11 103 chr11 30815484 30815659 -119967894 - MIR SINE MIR -61 201 43 537 92 0 0 chr11 30816232 30816308 -119967245 + (GA)n Simple_repeat Simple_repeat 1 76 0 195 312 34 34 chr11 30816936 30817064 -119966489 - L2 LINE L2 -334 2979 2852 2759 90 11 13 chr11 30817240 30817751 -119965802 - L1PA7 LINE L1 -502 5652 5143 3492 100 0 6 chr11 30817751 30818246 -119965307 + L1PA7 LINE L1 5656 6151 -3 1785 149 8 67 chr11 30818622 30818997 -119964556 + THE1A LTR MaLR 1 353 -2 11369 105 4 1 chr11 30818999 30820574 -119962979 + THE1A-int LTR MaLR 1 1580 0 1693 147 21 97 chr11 30820574 30820956 -119962597 + THE1B LTR MaLR 1 353 -11 2264 122 34 3 chr11 30821025 30821377 -119962176 + THE1B LTR MaLR 1 363 -1 771 301 59 23 chr11 30821425 30821841 -119961712 - LTR33 LTR ERVL -2 519 12 747 343 62 82 chr11 30822317 30822497 -119961056 - L2 LINE L2 -12 3260 3078 1634 135 81 4 chr11 30822497 30822780 -119960773 + AluSx SINE Alu 5 307 0 747 343 62 82 chr11 30822780 30823874 -119959679 - L2 LINE L2 -194 3078 1990 336 207 17 52 chr11 30824342 30824516 -119959037 + (TA)n Simple_repeat Simple_repeat 1 168 0 421 285 8 41 chr11 30825113 30825236 -119958317 + L2 LINE L2 3151 3269 -3 203 279 106 19 chr11 30825508 30825612 -119957941 - MIR SINE MIR -16 246 134 246 273 91 32 chr11 30825629 30825783 -119957770 - L2 LINE L2 -2 3311 3149 5627 140 96 19 chr11 30825953 30826776 -119956777 + Tigger3b DNA MER2_type 3 931 -2097 203 61 30 0 chr11 30826776 30826809 -119956744 + (CTCA)n Simple_repeat Simple_repeat 1 34 0 5627 140 96 19 chr11 30826809 30827067 -119956486 + Tigger3b DNA MER2_type 931 1168 -63 478 214 31 0 chr11 30827148 30827246 -119956307 + Tigger3b DNA MER2_type 1129 1229 -2 271 295 49 0 chr11 30827249 30827310 -119956243 - L2 LINE L2 -8 3264 3201 210 298 0 0 chr11 30828272 30828329 -119955224 + MIR3 SINE MIR 151 207 -1 23 0 9 0 chr11 30828616 30828679 -119954874 + AT_rich Low_complexity Low_complexity 1 23 0 12183 212 23 8 chr11 30829022 30832758 -119950795 + L1PA15 LINE L1 2373 6163 -2 506 278 4 0 chr11 30832975 30833237 -119950316 + (TA)n Simple_repeat Simple_repeat 1 263 0 9065 203 54 19 chr11 30833717 30840046 -119943507 - L1PB1 LINE L1 -1 6866 31 2595 99 6 0 chr11 30840504 30840857 -119942696 + THE1A LTR MaLR 1 355 0 11400 98 10 5 chr11 30840859 30842429 -119941124 + THE1A-int LTR MaLR 3 1580 0 2371 126 3 6 chr11 30842429 30842785 -119940768 + THE1A LTR MaLR 1 355 0 2850 106 25 7 chr11 30842808 30843250 -119940303 + L1PA13 LINE L1 5714 6163 0 30 45 0 0 chr11 30843250 30843294 -119940259 + AT_rich Low_complexity Low_complexity 1 44 0 566 109 277 0 chr11 30843296 30843415 -119940138 + L1PA13 LINE L1 6001 6152 -11 308 306 86 50 chr11 30843551 30844297 -119939256 + L1MEc LINE L1 1039 1811 -4585 1371 283 43 48 chr11 30844539 30845558 -119937995 + L1M4 LINE L1 3339 4352 -1794 1319 158 41 12 chr11 30846664 30846910 -119936643 - Tigger2 DNA MER2_type 0 2718 2466 340 153 0 69 chr11 30846912 30846965 -119936588 + Tigger2 DNA MER2_type 3 51 -2667 1449 212 7 26 chr11 30846965 30847267 -119936286 - AluJo SINE Alu -16 296 1 340 153 0 69 chr11 30847267 30847285 -119936268 + Tigger2 DNA MER2_type 51 69 -2649 1710 92 66 82 chr11 30847299 30847603 -119935950 + AluY SINE Alu 3 301 -10 1777 194 57 16 chr11 30847625 30848012 -119935541 + Tigger2 DNA MER2_type 2315 2717 -1 981 136 17 57 chr11 30848021 30848198 -119935355 - Tigger2a DNA MER2_type -263 171 2 23 0 0 0 chr11 30848747 30848770 -119934783 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr11 30848806 30848834 -119934719 + AT_rich Low_complexity Low_complexity 1 28 0 533 323 132 23 chr11 30849052 30849553 -119934000 - L2 LINE L2 -1 3312 2729 483 299 27 18 chr11 30849559 30849783 -119933770 + L1ME LINE L1 5556 5781 -340 266 368 98 10 chr11 30850438 30850631 -119932922 - MIR SINE MIR -7 255 46 1993 147 7 0 chr11 30850792 30851091 -119932462 - AluSx SINE Alu -7 305 5 2706 109 23 18 chr11 30851622 30852064 -119931489 + MLT2A1 LTR ERVL 1 444 0 221 303 13 40 chr11 30852279 30852355 -119931198 - L3 LINE CR1 -7 1570 1497 357 310 58 41 chr11 30852428 30852599 -119930954 - MIR SINE MIR -74 188 15 257 357 24 0 chr11 30853016 30853100 -119930453 + LTR16C LTR ERVL 136 221 -270 380 160 100 40 chr11 30853100 30853200 -119930353 + LTR16C LTR ERVL 385 490 -1 239 54 27 0 chr11 30854247 30854284 -119929269 + (TG)n Simple_repeat Simple_repeat 1 38 0 325 303 149 11 chr11 30854397 30854585 -119928968 - MIR SINE MIR -34 228 15 2240 100 7 7 chr11 30855482 30855791 -119927762 + AluSq SINE Alu 1 309 -4 22 0 0 0 chr11 30856415 30856437 -119927116 + AT_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr11 30856711 30856739 -119926814 + AT_rich Low_complexity Low_complexity 1 28 0 420 311 8 98 chr11 30857225 30857460 -119926093 + L2 LINE L2 2829 3042 -230 23 33 0 0 chr11 30858125 30858155 -119925398 + AT_rich Low_complexity Low_complexity 1 30 0 4615 130 12 7 chr11 30858631 30859516 -119924037 + L1PA16 LINE L1 5097 5982 -184 1743 173 16 16 chr11 30859633 30859945 -119923608 - AluSx SINE Alu 0 312 1 1096 190 0 51 chr11 30861338 30861575 -119921978 + AluJb SINE Alu 84 308 -4 646 194 8 8 chr11 30861914 30862038 -119921515 - MLT1A1 LTR MaLR -239 126 3 333 235 0 0 chr11 30862376 30862457 -119921096 + MER103 DNA DNA 8 88 -78 252 0 0 0 chr11 30862869 30862897 -119920656 + (CA)n Simple_repeat Simple_repeat 1 28 0 244 162 0 0 chr11 30863906 30863943 -119919610 + MER53 DNA DNA 1 37 -152 827 273 72 37 chr11 30864368 30864913 -119918640 - L1ME4a LINE L1 -11 6110 5547 2119 91 35 0 chr11 30865254 30865540 -119918013 - AluSg1 SINE Alu -13 296 1 273 89 0 0 chr11 30865691 30865736 -119917817 + (TTTA)n Simple_repeat Simple_repeat 1 45 0 1566 179 3 28 chr11 30865736 30866021 -119917532 - AluJb SINE Alu -32 280 3 224 301 55 0 chr11 30866401 30866474 -119917079 - MIR SINE MIR 0 262 186 1303 254 98 93 chr11 30866484 30867119 -119916434 + L2 LINE L2 2166 2803 -511 368 258 21 86 chr11 30867118 30867304 -119916249 + L2 LINE L2 3139 3312 -1 * 256 307 40 0 chr11 30867367 30867442 -119916111 - MIR SINE MIR -169 93 16 5642 140 72 39 chr11 30867466 30868692 -119914861 + MER11A LTR ERVK 1 1266 0 460 150 12 12 chr11 30868725 30868805 -119914748 + MLT1I LTR MaLR 62 141 -268 347 254 148 49 chr11 30868874 30869016 -119914537 + MLT1I LTR MaLR 254 409 0 997 152 30 18 chr11 30869209 30869373 -119914180 - AluJo SINE Alu -146 166 1 2071 161 77 17 chr11 30869526 30869930 -119913623 + MSTA LTR MaLR 1 428 0 561 278 67 0 chr11 30870048 30870257 -119913296 - L1M4 LINE L1 -1917 4229 4007 342 0 0 0 chr11 30870488 30870526 -119913027 + (TG)n Simple_repeat Simple_repeat 2 39 0 280 216 54 14 chr11 30870979 30871053 -119912500 - MLT1K LTR MaLR -5 583 507 1050 297 103 24 chr11 30872212 30872738 -119910815 - L2 LINE L2 -249 3064 2505 28 0 0 0 chr11 30872782 30872810 -119910743 + AT_rich Low_complexity Low_complexity 1 28 0 221 342 17 43 chr11 30872863 30872980 -119910573 - L2 LINE L2 -902 2412 2299 1857 194 80 39 chr11 30873295 30873780 -119909773 - MLT1D LTR MaLR 0 505 1 2800 88 44 14 chr11 30874377 30874808 -119908745 - MLT2A1 LTR ERVL 0 444 1 269 286 173 38 chr11 30874946 30875079 -119908474 + L2 LINE L2 3121 3271 -1 921 241 62 21 chr11 30875436 30875677 -119907876 - MIR SINE MIR 0 262 12 770 236 62 0 chr11 30875877 30876055 -119907498 + MER5A DNA MER1_type 1 189 0 1013 282 50 9 chr11 30876067 30876390 -119907163 + MER58B DNA MER1_type 6 341 0 245 287 32 32 chr11 30876436 30876530 -119907023 + MER5B DNA MER1_type 26 119 -59 374 305 44 35 chr11 30876613 30876816 -119906737 - MIR SINE MIR -56 206 2 447 183 66 124 chr11 30877942 30878079 -119905474 + MER20 DNA MER1_type 1 129 -90 3331 142 21 20 chr11 30878111 30878604 -119904949 - L1MA8 LINE L1 -19 6272 5776 185 62 0 31 chr11 30878604 30878636 -119904917 + (TA)n Simple_repeat Simple_repeat 1 31 0 3331 142 21 20 chr11 30878636 30878746 -119904807 - L1MA8 LINE L1 -515 5776 5668 491 184 20 10 chr11 30878746 30878844 -119904709 + MER20 DNA MER1_type 121 219 0 413 289 72 7 chr11 30879052 30879204 -119904349 + MIR SINE MIR 33 194 -68 234 322 185 19 chr11 30879823 30880034 -119903519 + MIR SINE MIR 1 246 -16 474 347 90 12 chr11 30880137 30880471 -119903082 + L2 LINE L2 2499 2858 -456 361 333 110 18 chr11 30881144 30881313 -119902240 + MIR SINE MIR 1 198 -64 514 156 272 72 chr11 30881313 30881493 -119902060 - MER20 DNA MER1_type 0 219 4 361 333 110 18 chr11 30881493 30881551 -119902002 + MIR SINE MIR 198 249 -13 1255 273 50 70 chr11 30882963 30883520 -119900033 + MER77 LTR ERV1 56 601 -4 240 238 0 0 chr11 30884696 30884759 -119898794 + (TA)n Simple_repeat Simple_repeat 2 64 0 258 107 54 0 chr11 30885213 30885269 -119898284 + GA-rich Low_complexity Low_complexity 3 61 0 577 304 33 19 chr11 30885405 30885619 -119897934 - MIR SINE MIR -14 248 32 25 0 0 0 chr11 30885670 30885695 -119897858 + AT_rich Low_complexity Low_complexity 1 25 0 1619 117 80 8 chr11 30885885 30886134 -119897419 + AluSg SINE Alu 25 291 -19 437 274 9 0 chr11 30886741 30886847 -119896706 + MER94 DNA DNA 13 119 -15 1449 313 66 42 chr11 30887748 30888615 -119894938 - L2 LINE L2 -163 3150 2263 703 379 75 7 chr11 30888698 30889274 -119894279 + L2 LINE L2 1730 2344 -970 270 176 0 0 chr11 30889298 30889349 -119894204 + (CA)n Simple_repeat Simple_repeat 2 52 0 375 277 73 23 chr11 30890047 30890224 -119893329 + MER112 DNA MER1_type 66 251 -9 207 354 49 12 chr11 30891057 30891139 -119892414 - MIR SINE MIR -155 107 23 2093 136 0 13 chr11 30891225 30891535 -119892018 + AluSx SINE Alu 1 306 -6 24497 154 16 15 chr11 30891670 30897187 -119886366 - L1P3 LINE L1 -877 5584 3 273 301 12 110 chr11 30897445 30897540 -119886013 + L2 LINE L2 2692 2764 -550 2257 118 0 0 chr11 30897540 30897845 -119885708 + AluY SINE Alu 1 305 -6 273 301 12 110 chr11 30897845 30897922 -119885631 + L2 LINE L2 2764 2847 -467 181 0 33 33 chr11 30897937 30897967 -119885586 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 289 255 163 13 chr11 30897974 30898127 -119885426 - AluYb8 SINE Alu -27 281 106 1045 127 0 117 chr11 30898369 30898582 -119884971 - AluSg SINE Alu -122 188 1 416 288 44 12 chr11 30898589 30898749 -119884804 + L2 LINE L2 3119 3283 -30 281 26 26 0 chr11 30900893 30900931 -119882622 + (TG)n Simple_repeat Simple_repeat 2 40 0 210 208 0 0 chr11 30901031 30901079 -119882474 + (TA)n Simple_repeat Simple_repeat 2 49 0 21 0 0 0 chr11 30901406 30901427 -119882126 + AT_rich Low_complexity Low_complexity 1 21 0 3052 162 30 25 chr11 30901616 30902245 -119881308 - L1MB3 LINE L1 -1 6182 5551 1515 180 46 3 chr11 30902403 30902687 -119880866 - MER46B DNA MER2_type -3 233 63 1310 247 184 43 chr11 30902770 30903276 -119880277 - MLT1G1 LTR MaLR -18 577 1 964 299 110 36 chr11 30903314 30903379 -119880174 - L2 LINE L2 -1 3312 3253 350 42 21 0 chr11 30903379 30903427 -119880126 + (CA)n Simple_repeat Simple_repeat 2 50 0 964 299 110 36 chr11 30903427 30903833 -119879720 - L2 LINE L2 -60 3253 2806 5321 263 70 18 chr11 30904573 30904657 -119878896 - L1PBb LINE L1 -2563 4285 4207 207 0 0 0 chr11 30904657 30904680 -119878873 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5321 263 70 18 chr11 30904680 30907431 -119876122 - L1PBb LINE L1 -2641 4207 1016 307 291 53 102 chr11 30907616 30907901 -119875652 - L1PBb LINE L1 -5782 1067 797 186 209 0 0 chr11 30908834 30908877 -119874676 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 229 286 105 40 chr11 30908944 30909100 -119874453 + MIR3 SINE MIR 29 193 -15 458 347 6 6 chr11 30909172 30909339 -119874214 + MIR SINE MIR 86 252 -10 976 282 24 38 chr11 30910063 30910403 -119873150 - MER102b DNA MER1_type -6 335 1 207 381 75 14 chr11 30910579 30910726 -119872827 - L2 LINE L2 0 3272 3117 236 289 70 26 chr11 30912757 30912871 -119870682 + MLT1L LTR MaLR 381 499 -116 1755 162 7 0 chr11 30912954 30913225 -119870328 + AluJo SINE Alu 3 275 -37 252 0 0 0 chr11 30913236 30913264 -119870289 + (CA)n Simple_repeat Simple_repeat 2 29 0 2832 35 6 0 chr11 30913423 30913791 -119869762 + L1PA3 LINE L1 5795 6164 0 369 109 0 0 chr11 30914043 30914054 -119869499 + (TG)n Simple_repeat Simple_repeat 1 66 0 369 109 0 0 chr11 30914054 30914109 -119869444 + (TG)n Simple_repeat Simple_repeat 2 56 0 2337 81 3 3 chr11 30915163 30915471 -119868082 - AluY SINE Alu -3 308 1 1565 175 0 74 chr11 30916038 30916375 -119867178 - AluJo SINE Alu 0 312 1 235 280 7 77 chr11 30917038 30917181 -119866372 - MIR SINE MIR -12 250 118 925 159 26 91 chr11 30917846 30918078 -119865475 - MER20 DNA MER1_type -1 218 2 2020 128 3 0 chr11 30918152 30918493 -119865060 - AluSc SINE Alu 0 309 1 186 211 0 26 chr11 30918551 30918589 -119864964 - L2 LINE L2 -16 3256 3220 1486 250 71 62 chr11 30919637 30920223 -119863330 + MLT1G LTR MaLR 1 590 0 1355 191 57 14 chr11 30920715 30920997 -119862556 + MLT2C1 LTR ERVL 56 349 -48 201 236 36 0 chr11 30920997 30921052 -119862501 + (TCTA)n Simple_repeat Simple_repeat 3 59 0 201 154 0 0 chr11 30921069 30921108 -119862445 + (TG)n Simple_repeat Simple_repeat 2 40 0 223 140 70 0 chr11 30921155 30921212 -119862341 + (CATATA)n Simple_repeat Simple_repeat 2 62 0 1570 196 16 53 chr11 30923214 30923591 -119859962 + MLT1A1 LTR MaLR 3 365 0 35 63 0 0 chr11 30924408 30924471 -119859082 + AT_rich Low_complexity Low_complexity 1 63 0 404 292 57 67 chr11 30924619 30925023 -119858530 - L1ME4a LINE L1 -226 5895 5496 243 125 0 0 chr11 30926644 30926684 -119856869 + (TG)n Simple_repeat Simple_repeat 1 40 0 213 39 0 0 chr11 30928875 30928901 -119854652 + (CA)n Simple_repeat Simple_repeat 2 27 0 43 47 0 0 chr11 30929131 30929195 -119854358 + GC_rich Low_complexity Low_complexity 1 64 0 2609 219 27 19 chr11 30929426 30930754 -119852799 + L1PA15-16 LINE L1 1934 3447 -3402 31975 38 3 0 chr11 30930874 30934787 -119848766 - L1P LINE L1 -1492 4654 730 7506 27 2 0 chr11 30934889 30936604 -119846949 + L1PA3 LINE L1 4478 6172 0 404 261 124 40 chr11 30936645 30937169 -119846384 + L1M4 LINE L1 2876 3443 -2703 30185 34 35 0 chr11 30937462 30941202 -119842351 - L1P LINE L1 -1761 4385 516 727 311 31 15 chr11 30942011 30942271 -119841282 + MLT1L LTR MaLR 350 613 -2 922 222 43 30 chr11 30942281 30942511 -119841042 + MIR SINE MIR 15 247 -15 375 333 0 0 chr11 30942554 30942656 -119840897 - MIR SINE MIR -69 139 38 19455 35 1 0 chr11 30942820 30945968 -119837585 - L1PA4 LINE L1 -2 6153 3006 1626 40 0 0 chr11 30945968 30946167 -119837386 - L1P LINE L1 -1397 4749 4551 * 19612 45 1 2 chr11 30946165 30948592 -119834961 - L1PA4 LINE L1 -3145 3001 577 193 301 87 29 chr11 30949338 30949441 -119834112 + MER5B DNA MER1_type 2 110 -68 245 246 0 18 chr11 30949359 30949416 -119834137 - MER5A DNA MER1_type -25 164 109 241 365 28 47 chr11 30949595 30949806 -119833747 + L2 LINE L2 2895 3101 -212 637 267 120 10 chr11 30949960 30950252 -119833301 - L1M4b LINE L1 -4864 2083 1760 22 0 0 0 chr11 30950266 30950288 -119833265 + AT_rich Low_complexity Low_complexity 1 22 0 463 243 95 18 chr11 30951570 30951808 -119831745 - L1M4b LINE L1 -6552 307 4 743 241 156 56 chr11 30953801 30954141 -119829412 + MLT1A2 LTR MaLR 1 374 0 249 325 39 13 chr11 30954145 30954222 -119829331 + MIR SINE MIR 34 112 -150 2696 206 20 5 chr11 30954576 30955167 -119828386 + L1MA8 LINE L1 5687 6286 -5 939 144 0 0 chr11 30955316 30955455 -119828098 + FLAM_C SINE Alu 1 139 -4 307 335 72 20 chr11 30955575 30955727 -119827826 + L2 LINE L2 2787 2946 -368 330 287 196 50 chr11 30955802 30956263 -119827290 - L2 LINE L2 -1 3312 2661 854 242 27 27 chr11 30956263 30956482 -119827071 - MER20 DNA MER1_type 0 219 1 330 287 196 50 chr11 30956482 30956505 -119827048 - L2 LINE L2 -652 2661 2643 2052 192 0 6 chr11 30956608 30956967 -119826586 + MLT1A1 LTR MaLR 1 357 -8 247 338 162 56 chr11 30957831 30958171 -119825382 - L2 LINE L2 0 3272 2897 429 284 66 69 chr11 30959838 30960127 -119823426 - L1ME4a LINE L1 -188 5933 5646 1288 285 99 8 chr11 30960171 30960554 -119822999 + LTR16C LTR ERVL 74 491 0 1136 228 0 25 chr11 30960555 30960840 -119822713 + L1MA4A LINE L1 5555 5832 -471 4804 33 7 0 chr11 30960584 30961158 -119822395 + L1PA4 LINE L1 5577 6154 -1 3227 72 12 2 chr11 30962431 30962859 -119820694 - L1PA7 LINE L1 -13 6141 5710 4376 88 12 5 chr11 30962860 30963499 -119820054 + L1P LINE L1 4740 5383 -763 775 291 43 4 chr11 30963718 30963952 -119819601 - MIR SINE MIR -13 249 7 23 78 0 0 chr11 30963966 30964017 -119819536 + AT_rich Low_complexity Low_complexity 1 51 0 368 298 53 18 chr11 30964272 30964443 -119819110 + L1ME LINE L1 5599 5775 -346 3254 189 51 58 chr11 30964518 30965390 -119818163 + L1MA9 LINE L1 4918 5767 -545 216 97 0 0 chr11 30965390 30965421 -119818132 + (CA)n Simple_repeat Simple_repeat 1 31 0 3254 189 51 58 chr11 30965421 30965764 -119817789 + L1MA9 LINE L1 5767 6111 -201 8521 142 28 14 chr11 30965765 30966168 -119817385 + Tigger2 DNA MER2_type 2 398 -2320 2884 36 39 0 chr11 30966168 30966524 -119817029 + L1PA4 LINE L1 5782 6151 -4 8521 142 28 14 chr11 30966524 30967569 -119815984 + Tigger2 DNA MER2_type 398 1469 -1249 195 42 0 0 chr11 30967584 30967608 -119815945 + (A)n Simple_repeat Simple_repeat 1 24 0 376 117 12 31 chr11 30967610 30967696 -119815857 + L1PA8 LINE L1 2132 2214 -4575 274 77 0 0 chr11 30967694 30967733 -119815820 - L1PA13 LINE L1 -4512 2275 2237 * 19391 153 23 25 chr11 30967873 30971487 -119812066 + L1PA8 LINE L1 2306 5935 -890 2614 70 75 0 chr11 30971487 30971844 -119811709 + L1PA8 LINE L1 6433 6817 -6 19391 153 23 25 chr11 30971844 30972139 -119811414 + L1PA8 LINE L1 5935 6229 -596 2429 116 60 3 chr11 30972139 30972520 -119811033 + MLT2A1 LTR ERVL 1 403 -41 1128 188 62 23 chr11 30972529 30972785 -119810768 + Tigger2 DNA MER2_type 2452 2717 -1 874 196 13 36 chr11 30972790 30973014 -119810539 + L1MA10 LINE L1 6114 6332 -2 360 343 96 20 chr11 30974500 30974751 -119808802 - L3 LINE CR1 -327 1250 981 357 24 0 0 chr11 30974755 30974797 -119808756 + (TG)n Simple_repeat Simple_repeat 2 43 0 334 312 165 0 chr11 30974879 30975049 -119808504 - MIR SINE MIR -30 232 35 335 333 94 42 chr11 30975826 30976018 -119807535 + MIR SINE MIR 11 212 -50 1439 279 61 10 chr11 30978134 30978529 -119805024 - LTR16C LTR ERVL -1 490 76 192 349 72 0 chr11 30978600 30978683 -119804870 + MIR3 SINE MIR 66 154 -54 1689 196 0 3 chr11 30978762 30979053 -119804500 + AluJo SINE Alu 1 290 -22 437 284 21 34 chr11 30979610 30979763 -119803790 - MIR3 SINE MIR -67 141 8 567 314 13 26 chr11 30980632 30980858 -119802695 - MIR SINE MIR 0 262 40 1674 168 45 10 chr11 30981320 30981611 -119801942 + AluJb SINE Alu 1 301 -11 498 33 0 0 chr11 30981611 30981671 -119801882 + (TG)n Simple_repeat Simple_repeat 1 60 0 1517 213 82 42 chr11 30981808 30982282 -119801271 + MLT1D LTR MaLR 13 505 0 2313 96 0 0 chr11 30982617 30982910 -119800643 - AluSc SINE Alu -16 293 1 231 324 155 7 chr11 30983555 30983697 -119799856 + MIR SINE MIR 97 259 -3 184 270 95 14 chr11 30983735 30983809 -119799744 - L2 LINE L2 -1079 2235 2156 419 260 77 99 chr11 30983862 30984044 -119799509 + MLT1G1 LTR MaLR 1 152 -438 2259 105 0 6 chr11 30984044 30984357 -119799196 + AluSx SINE Alu 1 311 -1 419 260 77 99 chr11 30984357 30984450 -119799103 + MLT1G1 LTR MaLR 152 246 -344 574 247 5 63 chr11 30984504 30984694 -119798859 + MLT1G1-int LTR MaLR 424 602 -769 269 269 39 67 chr11 30985273 30985377 -119798176 + MLT1G1-int LTR MaLR 1038 1138 -233 906 252 133 65 chr11 30985645 30986201 -119797352 + MLT1G1 LTR MaLR 1 594 -1 240 367 44 25 chr11 30986571 30986729 -119796824 - MIR SINE MIR -28 234 74 316 285 62 7 chr11 30987562 30987706 -119795847 - MER103 DNA DNA 0 166 15 343 327 31 93 chr11 30988019 30988245 -119795308 + MIR SINE MIR 1 212 -50 1302 181 60 81 chr11 30988814 30989196 -119794357 + MLT1A2 LTR MaLR 1 374 0 22 0 0 0 chr11 30991862 30991884 -119791669 + AT_rich Low_complexity Low_complexity 1 22 0 244 206 22 120 chr11 30992704 30992777 -119790776 + MIR SINE MIR 20 84 -178 2097 111 156 24 chr11 30992777 30993155 -119790398 + MSTA LTR MaLR 1 428 0 244 206 22 120 chr11 30993155 30993173 -119790380 + MIR SINE MIR 84 102 -160 2572 151 87 12 chr11 30993226 30993744 -119789809 + L1MB4 LINE L1 5623 6179 -1 1786 47 5 0 chr11 30994214 30994427 -119789126 - AluY SINE Alu -13 298 85 377 343 0 0 chr11 30994695 30994838 -119788715 + (TA)n Simple_repeat Simple_repeat 1 143 0 266 336 116 41 chr11 30995004 30995489 -119788064 + L2 LINE L2 1884 2404 -910 1254 191 75 71 chr11 30995646 30996180 -119787373 + pTR5 LTR ERV1 741 1344 -1094 4443 122 27 6 chr11 30996196 30996866 -119786687 + LTR12 LTR ERV1 5 688 0 1342 211 171 43 chr11 30997587 30998008 -119785545 - MLT1D LTR MaLR -3 502 28 27 0 0 0 chr11 30998525 30998552 -119785001 + AT_rich Low_complexity Low_complexity 1 27 0 2391 170 85 7 chr11 30998904 30999363 -119784190 + LTR42 LTR ERVL 1 495 0 198 0 0 0 chr11 30999775 30999797 -119783756 + (A)n Simple_repeat Simple_repeat 1 22 0 34 0 0 0 chr11 31000079 31000113 -119783440 + AT_rich Low_complexity Low_complexity 1 34 0 326 259 49 0 chr11 31000575 31000656 -119782897 + L1MC4 LINE L1 6619 6703 -1339 243 0 0 0 chr11 31000656 31000683 -119782870 + (TA)n Simple_repeat Simple_repeat 1 27 0 218 277 15 0 chr11 31001137 31001202 -119782351 + CT-rich Low_complexity Low_complexity 1 66 0 361 340 44 48 chr11 31001414 31001664 -119781889 + MIR SINE MIR 12 260 -2 21 36 0 0 chr11 31003248 31003276 -119780277 + AT_rich Low_complexity Low_complexity 1 28 0 284 305 16 56 chr11 31003298 31003547 -119780006 + L1ME LINE L1 5512 5750 -371 662 219 31 12 chr11 31003684 31003844 -119779709 + MER106B DNA MER1_type 896 1058 -1 207 315 139 0 chr11 31003931 31004039 -119779514 - MIR SINE MIR -31 231 109 216 0 0 0 chr11 31004183 31004207 -119779346 + (CA)n Simple_repeat Simple_repeat 2 25 0 209 307 27 27 chr11 31004411 31004486 -119779067 + MIR SINE MIR 49 123 -139 450 332 70 20 chr11 31005595 31005794 -119777759 - MIR SINE MIR -31 231 23 225 0 0 0 chr11 31006167 31006192 -119777361 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 2240 87 0 0 chr11 31006192 31006469 -119777084 - AluY SINE Alu -33 278 2 642 209 9 0 chr11 31006772 31006887 -119776666 + AluSq/x SINE Alu 1 116 -196 239 41 82 0 chr11 31006887 31006936 -119776617 + GA-rich Low_complexity Low_complexity 3 55 0 1777 211 90 75 chr11 31006988 31007534 -119776019 + MLT2B3 LTR ERVL 1 554 0 210 277 15 0 chr11 31007664 31007729 -119775824 + MIR SINE MIR 73 138 -124 1660 184 63 166 chr11 31007846 31008651 -119774902 - LTR8A LTR ERV1 -4 723 2 739 317 114 30 chr11 31008754 31009218 -119774335 - L2 LINE L2 0 3313 2811 2009 150 0 0 chr11 31009470 31009757 -119773796 + AluSx SINE Alu 1 287 -25 320 309 97 43 chr11 31009905 31010112 -119773441 + L1ME LINE L1 5285 5502 -619 18471 198 40 20 chr11 31010272 31013816 -119769737 + L1P4 LINE L1 2 3474 -3340 1804 127 67 11 chr11 31013816 31014099 -119769454 + AluSq SINE Alu 1 299 -14 18471 198 40 20 chr11 31014099 31014692 -119768861 + L1P4 LINE L1 3474 4054 -2760 258 32 0 0 chr11 31014692 31014723 -119768830 + (CA)n Simple_repeat Simple_repeat 2 32 0 18471 198 40 20 chr11 31014723 31016571 -119766982 + L1P4 LINE L1 4054 6160 -654 1547 175 35 7 chr11 31016617 31016903 -119766650 + AluJb SINE Alu 1 294 -18 221 255 0 0 chr11 31018314 31018361 -119765192 + CT-rich Low_complexity Low_complexity 2 48 0 291 334 65 51 chr11 31018630 31018841 -119764712 - MIR SINE MIR -50 212 5 22 56 0 0 chr11 31019099 31019135 -119764418 + AT_rich Low_complexity Low_complexity 1 36 0 477 0 0 0 chr11 31019491 31019544 -119764009 + (CA)n Simple_repeat Simple_repeat 2 54 0 551 313 7 0 chr11 31021383 31021530 -119762023 - MIR3 SINE MIR -7 201 54 221 315 27 0 chr11 31021879 31021952 -119761601 - MIR SINE MIR -150 112 38 275 333 0 0 chr11 31022355 31022424 -119761129 - L2 LINE L2 -17 3255 3187 21 0 0 0 chr11 31022731 31022752 -119760801 + AT_rich Low_complexity Low_complexity 1 21 0 252 300 90 0 chr11 31023319 31023419 -119760134 + L2 LINE L2 3161 3269 -3 198 0 0 0 chr11 31023497 31023519 -119760034 + (T)n Simple_repeat Simple_repeat 1 22 0 234 246 87 29 chr11 31024364 31024433 -119759120 - MIR SINE MIR -113 149 77 1065 303 98 23 chr11 31024433 31024911 -119758642 - LTR33 LTR ERVL 0 521 8 265 287 139 26 chr11 31025336 31025451 -119758102 - MER117 DNA MER1_type -31 166 39 603 326 98 45 chr11 31026077 31026599 -119756954 + L2 LINE L2 2765 3312 -1 242 274 68 48 chr11 31026711 31026857 -119756696 - MIR SINE MIR 0 262 114 302 331 45 32 chr11 31026994 31027151 -119756402 + MIR3 SINE MIR 3 161 -47 192 325 38 25 chr11 31027625 31027705 -119755848 + MIR3 SINE MIR 123 203 -5 45 29 0 14 chr11 31027910 31027942 -119755611 + AT_rich Low_complexity Low_complexity 1 32 -37 1288 137 18 171 chr11 31027942 31028270 -119755283 - AluJo SINE Alu -30 282 5 45 29 0 14 chr11 31028270 31028307 -119755246 + AT_rich Low_complexity Low_complexity 32 69 0 2591 52 0 0 chr11 31029078 31029386 -119754167 - AluY SINE Alu -3 308 1 21 0 0 0 chr11 31029388 31029409 -119754144 + AT_rich Low_complexity Low_complexity 1 21 0 303 279 91 39 chr11 31029507 31029661 -119753892 - L2 LINE L2 0 3313 3152 366 259 58 29 chr11 31030079 31030218 -119753335 - MER117 DNA MER1_type -40 157 15 258 346 110 0 chr11 31031521 31031648 -119751905 - MIR SINE MIR -74 188 48 734 299 40 26 chr11 31031888 31032236 -119751317 + L1MC/D LINE L1 5418 5770 -2038 181 342 139 30 chr11 31032551 31032946 -119750607 + L2 LINE L2 2299 2736 -578 860 96 0 16 chr11 31033430 31033555 -119749998 - LTR7 LTR ERV1 -327 123 1 * 1110 92 49 22 chr11 31033555 31033731 -119749822 + LTR7 LTR ERV1 268 448 -2 13856 115 17 26 chr11 31033733 31034370 -119749183 + HERVH LTR ERV1 1 642 -7071 2803 26 0 0 chr11 31034370 31034683 -119748870 - AluYb8 SINE Alu -5 313 1 13856 115 17 26 chr11 31034683 31036751 -119746802 + HERVH LTR ERV1 642 2995 -4718 865 143 27 0 chr11 31036730 31036877 -119746676 + HERVH LTR ERV1 3140 3290 -4423 * 2342 140 2 18 chr11 31036867 31037267 -119746286 + HERVH LTR ERV1 3492 3885 -3828 651 291 23 45 chr11 31038061 31038157 -119745396 + MIR SINE MIR 4 101 -161 2156 103 86 12 chr11 31038157 31038496 -119745057 + THE1B LTR MaLR 1 364 0 651 291 23 45 chr11 31038496 31038664 -119744889 + MIR SINE MIR 101 262 0 344 181 14 0 chr11 31041857 31041929 -119741624 + MER5A DNA MER1_type 28 100 -89 378 240 91 0 chr11 31042160 31042281 -119741272 - MER103 DNA DNA -16 150 19 316 206 11 11 chr11 31042358 31042450 -119741103 + (TA)n Simple_repeat Simple_repeat 2 93 0 1898 143 50 28 chr11 31042870 31043234 -119740319 - THE1C LTR MaLR 0 375 4 192 254 0 0 chr11 31044278 31044337 -119739216 + (TA)n Simple_repeat Simple_repeat 2 60 0 256 180 0 0 chr11 31044337 31044387 -119739166 - L1MC4 LINE L1 -1339 6703 6654 369 352 38 19 chr11 31045452 31045665 -119737888 - MIR SINE MIR -6 256 40 180 309 103 0 chr11 31045696 31045764 -119737789 + L2 LINE L2 3227 3301 -12 2424 140 138 0 chr11 31046735 31047171 -119736382 + MLT1D LTR MaLR 7 502 -3 323 233 41 0 chr11 31047399 31047472 -119736081 - MIR SINE MIR -1 261 186 213 65 0 0 chr11 31047609 31047640 -119735913 + (A)n Simple_repeat Simple_repeat 1 31 0 189 277 169 15 chr11 31048681 31048746 -119734807 + L2 LINE L2 3118 3192 -80 246 220 0 0 chr11 31049493 31049552 -119734001 + (TA)n Simple_repeat Simple_repeat 2 60 0 219 333 0 11 chr11 31049858 31049948 -119733605 + GA-rich Low_complexity Low_complexity 2 90 0 994 237 96 26 chr11 31050721 31051124 -119732429 + L1ME1 LINE L1 5743 6334 0 33 0 0 0 chr11 31053164 31053197 -119730356 + AT_rich Low_complexity Low_complexity 1 33 0 588 275 112 71 chr11 31053406 31053790 -119729763 + MLT1H LTR MaLR 12 454 -95 24 53 0 0 chr11 31055343 31055381 -119728172 + AT_rich Low_complexity Low_complexity 1 38 0 23 54 0 0 chr11 31055820 31055857 -119727696 + AT_rich Low_complexity Low_complexity 1 37 0 1826 134 51 16 chr11 31056115 31056429 -119727124 + MER44D DNA MER2_type 1 595 -14 24 32 0 0 chr11 31057574 31057605 -119725948 + AT_rich Low_complexity Low_complexity 1 31 0 962 209 47 29 chr11 31058503 31058780 -119724773 - L1MA7 LINE L1 0 6291 6010 2751 7 0 0 chr11 31060474 31060771 -119722782 + AluYa5 SINE Alu 1 297 -14 201 74 0 0 chr11 31062407 31062434 -119721119 + (CAG)n Simple_repeat Simple_repeat 2 28 0 23 68 0 0 chr11 31064769 31064813 -119718740 + AT_rich Low_complexity Low_complexity 1 44 0 185 337 71 10 chr11 31067181 31067227 -119716326 - MIR3 SINE MIR -29 179 137 267 31 0 0 chr11 31067227 31067259 -119716294 + (CA)n Simple_repeat Simple_repeat 2 33 0 185 337 71 10 chr11 31067259 31067310 -119716243 - MIR3 SINE MIR -71 137 76 219 139 0 0 chr11 31067981 31068017 -119715536 + (A)n Simple_repeat Simple_repeat 1 36 0 208 309 32 48 chr11 31068552 31068678 -119714875 - MIR SINE MIR -70 192 69 23 0 0 0 chr11 31070077 31070100 -119713453 + AT_rich Low_complexity Low_complexity 1 23 0 252 86 0 0 chr11 31070327 31070362 -119713191 + (CA)n Simple_repeat Simple_repeat 1 35 0 318 87 0 0 chr11 31072203 31072249 -119711304 + (TCC)n Simple_repeat Simple_repeat 2 47 0 371 293 41 34 chr11 31073925 31074072 -119709481 + MIR SINE MIR 114 261 -1 218 103 0 26 chr11 31075588 31075627 -119707926 + (GAAAA)n Simple_repeat Simple_repeat 3 40 0 258 116 0 0 chr11 31075938 31075981 -119707572 + (GA)n Simple_repeat Simple_repeat 2 44 0 207 0 0 0 chr11 31076473 31076496 -119707057 + (A)n Simple_repeat Simple_repeat 1 23 0 21 36 0 0 chr11 31077024 31077052 -119706501 + GC_rich Low_complexity Low_complexity 1 28 0 441 231 28 35 chr11 31077989 31078132 -119705421 - LTR43 LTR ERV1 -291 311 170 198 0 0 0 chr11 31078407 31078429 -119705124 + (A)n Simple_repeat Simple_repeat 1 22 0 330 45 0 0 chr11 31078479 31078523 -119705030 + (CA)n Simple_repeat Simple_repeat 1 44 0 513 289 0 54 chr11 31079626 31079830 -119703723 - MIR SINE MIR -10 252 60 1536 164 9 73 chr11 31080390 31080707 -119702846 - AluJo SINE Alu -15 297 1 2181 178 11 14 chr11 31081496 31081862 -119701691 - MLT1A1 LTR MaLR 0 365 1 211 315 125 60 chr11 31081924 31082108 -119701445 - L2 LINE L2 -46 3226 3031 266 320 51 26 chr11 31083851 31084017 -119699536 + MIR SINE MIR 24 191 -63 1472 211 26 32 chr11 31084095 31084441 -119699112 + MLT1A2 LTR MaLR 1 344 -30 1310 196 0 0 chr11 31084441 31084670 -119698883 + MER46A DNA MER2_type 3 231 -5 461 324 236 0 chr11 31084999 31085274 -119698279 - L2 LINE L2 -1 3312 2973 2718 26 0 3 chr11 31086529 31086837 -119696716 + AluYa5 SINE Alu 1 307 -4 21 0 0 0 chr11 31087605 31087626 -119695927 + AT_rich Low_complexity Low_complexity 1 21 0 535 278 117 6 chr11 31088032 31088194 -119695359 + MIR SINE MIR 16 195 -67 353 211 0 0 chr11 31088196 31088267 -119695286 - MER92C LTR ERV1 0 554 484 289 224 17 0 chr11 31088436 31088494 -119695059 - MER92C LTR ERV1 -495 59 1 283 298 33 33 chr11 31088927 31089048 -119694505 - MER31-int LTR ERV1 -2343 2593 2473 873 198 36 93 chr11 31089874 31090152 -119693401 - MER31-int LTR ERV1 -3649 1287 1026 448 238 107 95 chr11 31090598 31090850 -119692703 - MER92B LTR ERV1 -381 255 1 437 312 41 6 chr11 31090946 31091116 -119692437 + MIR SINE MIR 43 218 -44 22 56 0 0 chr11 31091397 31091433 -119692120 + AT_rich Low_complexity Low_complexity 1 36 0 363 358 93 0 chr11 31092233 31092384 -119691169 + MIR SINE MIR 28 192 -70 413 167 0 0 chr11 31092400 31092466 -119691087 + Tigger2 DNA MER2_type 3 68 -2650 * 2625 149 34 16 chr11 31092451 31092895 -119690658 + Tigger2 DNA MER2_type 2267 2718 0 213 309 0 0 chr11 31093207 31093262 -119690291 - L2 LINE L2 -219 3053 2999 4504 93 3 2 chr11 31093326 31093915 -119689638 + L1PA14 LINE L1 5570 6159 -2 693 234 31 72 chr11 31094059 31094281 -119689272 + MLT1D LTR MaLR 1 213 -292 4992 73 3 0 chr11 31094281 31094914 -119688639 - THE1B-int LTR MaLR -945 635 1 2207 118 81 29 chr11 31094914 31095260 -119688293 - THE1B LTR MaLR 0 364 1 1799 237 5 11 chr11 31095503 31095870 -119687683 + MLT1A1 LTR MaLR 1 365 0 704 307 169 22 chr11 31097160 31097781 -119685772 + L2 LINE L2 2593 3308 -5 242 203 0 16 chr11 31097781 31097845 -119685708 + GA-rich Low_complexity Low_complexity 4 66 0 396 351 43 19 chr11 31099225 31099433 -119684120 - MIR SINE MIR -20 242 30 2107 130 0 0 chr11 31099542 31099835 -119683718 + AluSx SINE Alu 19 311 -1 1128 99 0 12 chr11 31099840 31100085 -119683468 + (GAA)n Simple_repeat Simple_repeat 1 242 0 390 334 96 35 chr11 31100187 31100615 -119682938 + L2 LINE L2 2081 2534 -780 807 193 84 101 chr11 31100647 31101004 -119682549 - LTR37A LTR ERV1 0 426 76 208 200 22 0 chr11 31101167 31101212 -119682341 + L2 LINE L2 2608 2653 -661 240 81 135 0 chr11 31101224 31101261 -119682292 + MER67D LTR ERV1 12 53 -461 192 200 0 0 chr11 31101261 31101306 -119682247 + (TG)n Simple_repeat Simple_repeat 1 45 0 2064 116 3 0 chr11 31101306 31101590 -119681963 - AluSx SINE Alu -27 285 1 1904 200 78 42 chr11 31101590 31101692 -119681861 + MER67D LTR ERV1 44 141 -373 3201 123 5 0 chr11 31101692 31102124 -119681429 - MER57B LTR ERV1 0 434 1 1904 200 78 42 chr11 31102124 31102471 -119681082 + MER67D LTR ERV1 141 509 -5 1366 184 27 51 chr11 31102478 31102771 -119680782 - AluJo SINE Alu -26 286 1 351 274 100 92 chr11 31102918 31103199 -119680354 + MER102a DNA MER1_type 32 314 -16 323 257 15 139 chr11 31103282 31103484 -119680069 + L2 LINE L2 2885 3061 -211 593 250 109 34 chr11 31104100 31104336 -119679217 - MLT1E1 LTR MaLR -41 613 283 230 295 86 38 chr11 31104390 31104495 -119679058 - MIR SINE MIR -65 143 34 2182 169 71 105 chr11 31104648 31105256 -119678297 + LTR18B LTR ERVL 1 587 -27 10476 186 34 7 chr11 31105291 31107139 -119676414 + HERVL18 LTR ERVL 4 1901 -4146 250 250 0 0 chr11 31107184 31107244 -119676309 + LTR18B LTR ERVL 133 192 -422 * 532 231 0 23 chr11 31107236 31107366 -119676187 + LTR18B LTR ERVL 486 612 -2 516 291 132 38 chr11 31107703 31107966 -119675587 + MLT1J1 LTR MaLR 1 291 -155 2336 89 13 0 chr11 31107966 31108269 -119675284 - L1PA11 LINE L1 -1 6173 5867 516 291 132 38 chr11 31108269 31108442 -119675111 + MLT1J1 LTR MaLR 291 446 0 21 0 0 0 chr11 31109410 31109431 -119674122 + AT_rich Low_complexity Low_complexity 1 21 0 427 219 38 75 chr11 31109534 31109694 -119673859 - MLT1K LTR MaLR 0 588 435 260 200 36 18 chr11 31109827 31109882 -119673671 - MLT1K LTR MaLR -371 217 162 361 315 0 0 chr11 31110161 31110250 -119673303 + polypurine Low_complexity Low_complexity 4 92 0 210 143 0 0 chr11 31111108 31111143 -119672410 + (T)n Simple_repeat Simple_repeat 1 35 0 40447 37 22 1 chr11 31111145 31117173 -119666380 - L1PA3 LINE L1 -1 6154 1 7627 28 0 3 chr11 31117906 31119169 -119664384 + L1PA4 LINE L1 4889 6155 0 285 248 14 117 chr11 31119600 31119745 -119663808 + MIR SINE MIR 87 216 -46 1147 315 122 4 chr11 31119878 31120396 -119663157 + L2 LINE L2 1775 2353 -961 5443 218 63 41 chr11 31120510 31122326 -119661227 + L1M4 LINE L1 23 1878 -4768 1186 58 0 0 chr11 31122327 31122481 -119661072 - L1PA6 LINE L1 -1 6153 6000 35103 90 12 7 chr11 31122481 31127695 -119655858 - L1P LINE L1 -896 5250 11 880 254 36 0 chr11 31127710 31127985 -119655568 + L1M4 LINE L1 1874 2158 -4488 337 301 27 48 chr11 31128009 31128155 -119655398 + L1M4 LINE L1 2296 2438 -4208 772 109 31 0 chr11 31128187 31128315 -119655238 + LTR54 LTR ERV1 379 510 0 1193 248 55 12 chr11 31128318 31128717 -119654836 + L1MB7 LINE L1 5751 6166 -18 1965 121 4 7 chr11 31128958 31129268 -119654285 + AluSc SINE Alu 1 309 0 778 151 22 170 chr11 31129317 31129635 -119653918 - L1MA10 LINE L1 -2 6332 6062 280 219 171 85 chr11 31129716 31129880 -119653673 + L2 LINE L2 3135 3312 -1 199 0 65 0 chr11 31132178 31132209 -119651344 + (CAAAAA)n Simple_repeat Simple_repeat 3 35 0 873 253 34 17 chr11 31132450 31132687 -119650866 - MIR SINE MIR 0 262 22 976 195 0 0 chr11 31132826 31132990 -119650563 + FRAM SINE Alu 1 161 -15 273 221 18 0 chr11 31133316 31133380 -119650173 - MIR SINE MIR -71 137 72 722 270 47 47 chr11 31133518 31133751 -119649802 + MIR SINE MIR 4 236 -26 2541 211 40 42 chr11 31133857 31134603 -119648950 - L1MA9 LINE L1 -38 6274 5530 207 264 309 9 chr11 31134614 31134724 -119648829 - MIR3 SINE MIR -65 143 1 653 264 128 22 chr11 31134956 31135183 -119648370 + MIR SINE MIR 3 253 -9 955 259 121 47 chr11 31135344 31135808 -119647745 + MLT1F1 LTR MaLR 70 567 0 254 330 45 0 chr11 31135808 31135896 -119647657 - MIR SINE MIR -44 218 127 21 57 0 0 chr11 31137135 31137170 -119646383 + AT_rich Low_complexity Low_complexity 1 35 0 366 358 47 34 chr11 31137497 31137645 -119645908 + MIR3 SINE MIR 7 156 -52 2285 245 32 5 chr11 31137815 31138375 -119645178 - MER82 DNA MER2_type 0 653 79 2069 127 127 21 chr11 31139496 31139881 -119643672 + MSTA LTR MaLR 1 426 -2 850 245 25 0 chr11 31140249 31140445 -119643108 - MIR SINE MIR -60 202 2 283 274 0 0 chr11 31140656 31140729 -119642824 + (TA)n Simple_repeat Simple_repeat 1 73 0 978 278 38 59 chr11 31141031 31141474 -119642079 + LTR16A LTR ERVL 17 450 0 589 240 58 7 chr11 31141729 31141883 -119641670 - MIR SINE MIR -17 245 84 212 267 0 0 chr11 31142251 31142311 -119641242 + A-rich Low_complexity Low_complexity 1 60 0 312 231 0 0 chr11 31142830 31142908 -119640645 + GA-rich Low_complexity Low_complexity 3 80 0 21 0 0 0 chr11 31143096 31143117 -119640436 + AT_rich Low_complexity Low_complexity 1 21 0 438 266 92 41 chr11 31143501 31143817 -119639736 + HAL1b LINE L1 278 609 -739 595 264 28 60 chr11 31143902 31144169 -119639384 + HAL1b LINE L1 450 705 -643 2230 119 132 8 chr11 31144169 31144548 -119639005 - MSTA LTR MaLR 0 428 3 595 264 28 60 chr11 31144548 31144632 -119638921 + HAL1b LINE L1 705 790 -558 540 297 57 6 chr11 31144632 31144807 -119638746 + MIR SINE MIR 40 223 -39 261 268 0 29 chr11 31144860 31144874 -119638679 + GA-rich Low_complexity Low_complexity 1 14 -367 2358 90 3 6 chr11 31144874 31145186 -119638367 + AluSx SINE Alu 1 311 -1 261 268 0 29 chr11 31145186 31145253 -119638300 + GA-rich Low_complexity Low_complexity 14 381 0 234 311 31 31 chr11 31145306 31145563 -119637990 + HAL1b LINE L1 747 1003 -345 368 242 8 0 chr11 31145575 31145707 -119637846 + (TA)n Simple_repeat Simple_repeat 1 133 0 285 261 157 15 chr11 31145714 31145982 -119637571 + HAL1b LINE L1 1014 1319 -29 1875 184 82 64 chr11 31146051 31146585 -119636968 - MER89 LTR ERV1 -14 545 2 312 176 0 0 chr11 31146758 31146826 -119636727 + (TA)n Simple_repeat Simple_repeat 1 68 0 727 195 6 198 chr11 31147057 31147380 -119636173 + MIR SINE MIR 2 262 0 6791 24 12 2 chr11 31147525 31148377 -119635176 - L1PA4 LINE L1 -11 6144 5285 806 240 111 11 chr11 31149368 31149639 -119633914 - LTR16A LTR ERVL -98 352 55 21 0 0 0 chr11 31150045 31150066 -119633487 + AT_rich Low_complexity Low_complexity 1 21 0 40760 31 23 5 chr11 31150070 31156117 -119627436 - L1PA3 LINE L1 0 6155 3 285 287 127 32 chr11 31156439 31156732 -119626821 + L2 LINE L2 2679 3008 -264 812 216 38 24 chr11 31156732 31156945 -119626608 - MER20 DNA MER1_type -3 216 1 285 287 127 32 chr11 31156945 31157027 -119626526 + L2 LINE L2 3008 3081 -191 3236 141 41 38 chr11 31157153 31157553 -119626000 - Tigger2 DNA MER2_type -2058 660 256 1663 151 54 0 chr11 31157553 31157831 -119625722 - AluJb SINE Alu -19 293 1 3236 141 41 38 chr11 31157831 31158088 -119625465 - Tigger2 DNA MER2_type -2462 256 1 22876 70 7 0 chr11 31158299 31162149 -119621404 - L1PA7 LINE L1 0 6154 2283 180 0 0 0 chr11 31162891 31162911 -119620642 + (A)n Simple_repeat Simple_repeat 1 20 0 2211 93 3 6 chr11 31166139 31166471 -119617082 + L1P4 LINE L1 5387 5717 -457 497 269 101 17 chr11 31166471 31166709 -119616844 - MIR SINE MIR -3 259 2 269 368 132 0 chr11 31167590 31167780 -119615773 + MIR SINE MIR 48 262 0 22 35 0 0 chr11 31168509 31168538 -119615015 + AT_rich Low_complexity Low_complexity 1 29 0 754 281 38 21 chr11 31168687 31168830 -119614723 - MIR SINE MIR -2 260 110 1040 245 34 85 chr11 31168830 31169300 -119614253 - MLT1J1 LTR MaLR 0 446 1 754 281 38 21 chr11 31169300 31169394 -119614159 - MIR SINE MIR -152 110 19 517 253 43 105 chr11 31169917 31170199 -119613354 - MIR SINE MIR -16 246 2 446 314 58 11 chr11 31170653 31170844 -119612709 - MIR SINE MIR -59 203 4 3009 269 108 10 chr11 31171476 31172566 -119610987 + L2 LINE L2 1843 3038 -275 1537 280 52 35 chr11 31172597 31173386 -119610167 + L1ME LINE L1 34 835 -5235 3843 76 4 4 chr11 31173434 31173948 -119609605 - L1PA7 LINE L1 -7 6147 5634 40978 33 24 1 chr11 31173963 31179976 -119603577 - L1PA4 LINE L1 -3 6152 1 469 249 249 0 chr11 31180535 31180716 -119602837 - MIR SINE MIR -3 259 34 285 323 115 51 chr11 31180878 31181234 -119602319 - L2 LINE L2 0 3313 2935 250 288 50 36 chr11 31181882 31182021 -119601532 - MIR3 SINE MIR -8 200 60 2255 80 0 17 chr11 31182213 31182534 -119601019 + AluY SINE Alu 1 316 0 366 208 94 10 chr11 31183260 31183356 -119600197 - MER117 DNA MER1_type -48 149 46 670 250 49 11 chr11 31183554 31183738 -119599815 + LTR10B LTR ERV1 315 505 0 189 350 131 25 chr11 31184337 31184497 -119599056 + MIR SINE MIR 35 211 -51 257 345 60 0 chr11 31185696 31185812 -119597741 + Charlie8 DNA MER1_type 138 260 -2157 2968 162 15 31 chr11 31185963 31186466 -119597087 + L1MA4 LINE L1 5521 6031 -269 1790 149 29 60 chr11 31186466 31186814 -119596739 + MER1B DNA MER1_type 1 337 0 2968 162 15 31 chr11 31186814 31186840 -119596713 + L1MA4 LINE L1 6031 6056 -244 2099 135 3 0 chr11 31186840 31187151 -119596402 + AluSx SINE Alu 1 312 0 2968 162 15 31 chr11 31187151 31187236 -119596317 + L1MA4 LINE L1 6056 6126 -174 297 167 0 0 chr11 31187344 31187398 -119596155 + (CATA)n Simple_repeat Simple_repeat 1 54 0 287 188 163 12 chr11 31187561 31187641 -119595912 + MIR SINE MIR 63 154 -108 30 27 0 0 chr11 31187734 31187771 -119595782 + AT_rich Low_complexity Low_complexity 1 37 0 225 294 49 49 chr11 31188214 31188357 -119595196 + MIR SINE MIR 12 154 -108 2286 104 10 0 chr11 31189049 31189346 -119594207 + AluSp SINE Alu 4 303 -10 180 77 0 0 chr11 31189872 31189898 -119593655 + (GA)n Simple_repeat Simple_repeat 1 26 0 387 262 75 0 chr11 31190646 31190753 -119592800 + MIR3 SINE MIR 91 205 -3 23 33 0 0 chr11 31190817 31190847 -119592706 + AT_rich Low_complexity Low_complexity 1 30 0 339 329 70 35 chr11 31190915 31191143 -119592410 + MIR SINE MIR 1 236 -26 21 0 0 0 chr11 31191397 31191418 -119592135 + AT_rich Low_complexity Low_complexity 1 21 0 702 247 133 7 chr11 31191789 31192068 -119591485 - LTR33A LTR ERVL -7 516 203 323 256 0 23 chr11 31192726 31192812 -119590741 + CT-rich Low_complexity Low_complexity 2 85 0 226 354 22 3 chr11 31192895 31193002 -119590551 + MIR SINE MIR 28 114 -94 272 290 0 0 chr11 31193002 31193064 -119590489 + polypyrimidine Low_complexity Low_complexity 1 62 0 703 161 21 34 chr11 31193064 31193348 -119590205 + CT-rich Low_complexity Low_complexity 1 280 0 675 197 0 0 chr11 31193352 31193469 -119590084 - FRAM SINE Alu -14 162 46 339 205 0 0 chr11 31193569 31193652 -119589901 - L1M4 LINE L1 -941 5205 5123 3934 24 0 0 chr11 31193652 31194112 -119589441 + L1PA2 LINE L1 5693 6152 -3 971 180 35 2 chr11 31194119 31194691 -119588862 + L1MD2 LINE L1 5295 5975 -267 1266 208 13 20 chr11 31194697 31195000 -119588553 + L1MD2 LINE L1 6043 6343 -16 1428 239 3 27 chr11 31195174 31195508 -119588045 + MLT1I LTR MaLR 84 409 0 249 57 0 0 chr11 31196664 31196699 -119586854 + (CAGAGA)n Simple_repeat Simple_repeat 2 36 0 336 271 42 0 chr11 31197483 31197579 -119585974 + MIR3 SINE MIR 98 197 -11 2828 130 56 33 chr11 31198364 31198916 -119584637 + L1MA8 LINE L1 5724 6288 -3 448 293 89 4 chr11 31198934 31199193 -119584360 + L1MEc LINE L1 1538 1818 -4578 3725 161 28 27 chr11 31199205 31199452 -119584101 - L1MA4 LINE L1 0 6300 6055 2099 135 3 0 chr11 31199452 31199763 -119583790 - AluSx SINE Alu 0 312 1 3725 161 28 27 chr11 31199763 31199789 -119583764 - L1MA4 LINE L1 -245 6055 6031 1790 149 29 60 chr11 31199789 31200137 -119583416 - MER1B DNA MER1_type 0 337 1 3725 161 28 27 chr11 31200137 31200641 -119582912 - L1MA4 LINE L1 -269 6031 5521 257 345 60 0 chr11 31200792 31200908 -119582645 - Charlie8 DNA MER1_type -2157 260 138 189 350 131 25 chr11 31202107 31202267 -119581286 - MIR SINE MIR -51 211 35 1732 246 25 23 chr11 31202866 31203378 -119580175 - LTR10D LTR ERV1 0 513 1 1592 178 0 50 chr11 31203398 31203723 -119579830 - AluJb SINE Alu 0 310 1 266 330 122 20 chr11 31204573 31204770 -119578783 - MIR SINE MIR -44 218 2 640 266 122 101 chr11 31206024 31206360 -119577193 - L2 LINE L2 -18 3295 2943 1562 218 7 13 chr11 31206360 31206667 -119576886 + AluJo SINE Alu 1 305 -7 640 266 122 101 chr11 31206667 31206824 -119576729 - L2 LINE L2 -370 2943 2791 1393 152 46 100 chr11 31206921 31207310 -119576243 - THE1C LTR MaLR -7 368 1 646 324 45 26 chr11 31207311 31207620 -119575933 + L2 LINE L2 2994 3308 -5 366 208 94 10 chr11 31208141 31208237 -119575316 + MER117 DNA MER1_type 46 149 -48 2254 80 0 17 chr11 31208963 31209284 -119574269 - AluY SINE Alu 0 316 1 250 288 50 36 chr11 31209476 31209615 -119573938 + MIR3 SINE MIR 60 200 -8 285 323 115 51 chr11 31210264 31210620 -119572933 + L2 LINE L2 2935 3313 0 469 249 249 0 chr11 31210782 31210963 -119572590 + MIR SINE MIR 34 259 -3 192 324 0 29 chr11 31212651 31212719 -119570834 - L2 LINE L2 0 3272 3207 22 0 0 0 chr11 31212719 31212741 -119570812 + AT_rich Low_complexity Low_complexity 1 22 0 637 301 38 9 chr11 31212750 31212963 -119570590 - MIR SINE MIR -12 250 32 375 309 44 28 chr11 31213712 31213893 -119569660 + MIR3 SINE MIR 4 187 -21 207 260 52 13 chr11 31214134 31214211 -119569342 + MIR SINE MIR 180 259 -3 567 249 68 89 chr11 31214480 31215276 -119568277 + L1MEc LINE L1 806 1591 -4624 492 145 0 0 chr11 31215301 31215384 -119568169 - L1PA16 LINE L1 -10 6156 6074 2999 160 69 12 chr11 31215384 31216147 -119567406 + MER21A LTR ERV1 3 931 0 690 148 25 0 chr11 31216147 31216269 -119567284 - L1PA16 LINE L1 -86 6080 5956 339 206 96 55 chr11 31216392 31216591 -119566962 + L1MEc LINE L1 1773 1979 -4417 2594 96 23 35 chr11 31216591 31217025 -119566528 - MER1A DNA MER1_type 0 529 61 386 101 116 14 chr11 31217068 31217137 -119566416 - Charlie3 DNA MER1_type 0 2711 2636 1257 80 37 43 chr11 31217149 31217336 -119566217 + AluSg/x SINE Alu 112 297 -15 1224 276 22 38 chr11 31217378 31217980 -119565573 + L1MEc LINE L1 2590 3181 -3034 22 56 0 0 chr11 31219271 31219307 -119564246 + AT_rich Low_complexity Low_complexity 1 36 0 245 271 17 0 chr11 31221780 31221839 -119561714 - MIR3 SINE MIR -35 173 114 274 326 127 36 chr11 31223668 31223889 -119559664 - L3 LINE CR1 -207 1370 1130 202 226 132 0 chr11 31224114 31224167 -119559386 - L3 LINE CR1 -635 942 883 399 280 68 23 chr11 31224520 31224652 -119558901 + MIR SINE MIR 32 169 -93 * 685 271 26 70 chr11 31224650 31224923 -119558630 - MIR SINE MIR 0 262 2 485 260 41 8 chr11 31225006 31225129 -119558424 + MIR SINE MIR 16 142 -66 534 271 33 26 chr11 31226097 31226248 -119557305 + MIR3 SINE MIR 19 170 -38 244 253 66 0 chr11 31226308 31226399 -119557154 - Charlie8 DNA MER1_type -1901 516 420 682 152 32 0 chr11 31226399 31226524 -119557029 - L1MC3 LINE L1 -10 7775 7647 207 100 0 0 chr11 31226757 31226787 -119556766 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 280 184 46 92 chr11 31226788 31226897 -119556656 - Charlie8 DNA MER1_type -2276 141 38 1694 183 46 39 chr11 31226960 31227349 -119556204 - MLT1D LTR MaLR -113 392 1 186 261 141 65 chr11 31229005 31229097 -119554456 - MIR SINE MIR -75 187 89 2209 108 61 19 chr11 31229167 31229527 -119554026 - THE1C LTR MaLR 0 375 1 5542 113 28 5 chr11 31229527 31230371 -119553182 - THE1C-int LTR MaLR 0 1580 717 438 70 2 0 chr11 31230373 31230442 -119553111 - THE1C LTR MaLR -285 70 1 454 325 16 5 chr11 31230483 31230677 -119552876 + MER117 DNA MER1_type 1 196 -1 708 211 13 13 chr11 31230873 31231029 -119552524 + MER58B DNA MER1_type 173 328 -13 41176 46 2 7 chr11 31231036 31237216 -119546337 + L1PA4 LINE L1 4 6155 0 329 204 48 36 chr11 31237202 31237369 -119546184 + L1ME LINE L1 5282 5450 -2335 * 192 77 0 0 chr11 31237369 31237395 -119546158 + (A)n Simple_repeat Simple_repeat 1 26 0 622 229 17 46 chr11 31239039 31239214 -119544339 - L2 LINE L2 -27 3286 3117 453 238 97 28 chr11 31239288 31239493 -119544060 + MLT1H LTR MaLR 6 232 -298 290 165 311 0 chr11 31239544 31239647 -119543906 + MLT1H LTR MaLR 421 555 0 1006 312 78 5 chr11 31239682 31240074 -119543479 - L2 LINE L2 -256 3057 2631 985 236 24 77 chr11 31240160 31240537 -119543016 - L1ME1 LINE L1 -31 6135 5779 1852 198 52 9 chr11 31240643 31241103 -119542450 - L1ME1 LINE L1 -374 5792 5313 2162 125 0 22 chr11 31241103 31241422 -119542131 - AluSq SINE Alu -1 312 1 1003 197 25 7 chr11 31241436 31241710 -119541843 - L1ME1 LINE L1 -875 5271 4993 321 258 0 32 chr11 31242219 31242312 -119541241 + CT-rich Low_complexity Low_complexity 4 93 0 1641 179 38 14 chr11 31242312 31242603 -119540950 - AluJo SINE Alu -14 298 1 391 218 109 13 chr11 31242981 31243137 -119540416 + L1ME LINE L1 5625 5795 -326 606 183 0 0 chr11 31243500 31243620 -119539933 + (TA)n Simple_repeat Simple_repeat 1 120 0 5655 114 11 23 chr11 31243636 31245360 -119538193 - L1PA10 LINE L1 -63 6105 4413 245 333 48 12 chr11 31245571 31245655 -119537898 + MIR SINE MIR 1 87 -175 2502 79 0 0 chr11 31247203 31247507 -119536046 - AluY SINE Alu -7 304 1 2692 105 6 0 chr11 31248417 31248779 -119534774 - THE1B LTR MaLR 0 364 1 299 353 77 67 chr11 31249225 31249879 -119533674 + L2 LINE L2 2525 3190 -82 699 288 114 34 chr11 31250707 31250942 -119532611 - L2 LINE L2 -7 3306 3046 1589 181 72 26 chr11 31250942 31251291 -119532262 - MLT1A1 LTR MaLR 0 365 1 699 288 114 34 chr11 31251291 31251319 -119532234 - L2 LINE L2 -267 3046 3022 296 245 39 26 chr11 31251415 31251570 -119531983 - L1ME LINE L1 -5057 1013 857 7560 31 1 0 chr11 31251612 31253064 -119530489 + L1PA4 LINE L1 4700 6152 -3 3843 76 4 4 chr11 31253079 31253593 -119529960 + L1PA7 LINE L1 5634 6147 -7 1537 280 52 35 chr11 31253641 31254430 -119529123 - L1ME LINE L1 -5235 835 34 3009 269 108 10 chr11 31254461 31255551 -119528002 - L2 LINE L2 -275 3038 1843 449 314 58 11 chr11 31256183 31256374 -119527179 + MIR SINE MIR 4 203 -59 517 256 43 105 chr11 31256828 31257110 -119526443 + MIR SINE MIR 2 246 -16 754 281 38 21 chr11 31257635 31257729 -119525824 + MIR SINE MIR 19 110 -152 1040 245 34 85 chr11 31257729 31258199 -119525354 + MLT1J1 LTR MaLR 1 446 0 754 281 38 21 chr11 31258199 31258342 -119525211 + MIR SINE MIR 110 260 -2 22 35 0 0 chr11 31258491 31258520 -119525033 + AT_rich Low_complexity Low_complexity 1 29 0 269 368 132 0 chr11 31259249 31259439 -119524114 - MIR SINE MIR 0 262 48 497 269 101 17 chr11 31260320 31260558 -119522995 + MIR SINE MIR 2 259 -3 2211 93 3 6 chr11 31260558 31260890 -119522663 - L1P4 LINE L1 -457 5717 5387 223 254 0 36 chr11 31262678 31262733 -119520820 + L2 LINE L2 3212 3264 -8 189 191 24 24 chr11 31263018 31263060 -119520493 + L3 LINE CR1 1532 1573 -4 181 172 0 0 chr11 31263454 31263483 -119520070 + L2 LINE L2 3267 3295 -18 749 266 126 55 chr11 31263560 31264049 -119519504 + MLT1H LTR MaLR 26 547 -2 2414 84 0 0 chr11 31264487 31264783 -119518770 - AluY SINE Alu -15 296 1 180 0 0 0 chr11 31264807 31264827 -119518726 + (TTG)n Simple_repeat Simple_repeat 2 21 0 218 309 103 44 chr11 31266427 31266563 -119516990 - L2 LINE L2 -2 3311 3168 420 280 119 18 chr11 31266564 31266732 -119516821 - MIR SINE MIR -64 198 14 203 295 115 0 chr11 31266837 31266898 -119516655 - L2 LINE L2 -3 3310 3243 1724 108 17 0 chr11 31267345 31267576 -119515977 - AluSc SINE Alu -14 295 61 206 269 45 30 chr11 31267581 31267648 -119515905 - MER5B DNA MER1_type 0 178 111 229 220 0 17 chr11 31267648 31267707 -119515846 + L1ME2 LINE L1 4794 4851 -1295 * 2977 204 30 49 chr11 31267704 31267766 -119515787 + L1ME2 LINE L1 5121 5183 -981 1963 175 18 30 chr11 31267766 31268161 -119515392 - MLT1B LTR MaLR 0 390 1 2977 204 30 49 chr11 31268161 31268280 -119515273 + L1ME2 LINE L1 5183 5303 -861 2392 82 3 0 chr11 31268280 31268573 -119514980 + AluSg SINE Alu 1 294 -16 2977 204 30 49 chr11 31268573 31269441 -119514112 + L1ME2 LINE L1 5303 6153 -11 300 283 40 30 chr11 31269441 31269506 -119514047 + MER5A DNA MER1_type 68 136 -53 180 0 0 0 chr11 31269506 31269526 -119514027 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 300 283 40 30 chr11 31269526 31269559 -119513994 + MER5A DNA MER1_type 136 167 -22 251 229 21 139 chr11 31269585 31269729 -119513824 - L3 LINE CR1 -59 1518 1392 197 349 12 12 chr11 31269904 31269987 -119513566 - L2 LINE L2 0 3272 3190 835 291 8 35 chr11 31270537 31270795 -119512758 - MIR SINE MIR 0 262 12 1176 285 60 2 chr11 31271696 31272093 -119511460 - MLT1J1 LTR MaLR -26 420 1 661 225 36 20 chr11 31272093 31272342 -119511211 + L1ME LINE L1 5258 5510 -660 401 289 46 61 chr11 31272496 31272693 -119510860 + LTR16C LTR ERVL 297 490 -1 291 241 94 94 chr11 31272719 31272910 -119510643 + L1ME LINE L1 5533 5723 -447 251 339 133 23 chr11 31273240 31273458 -119510095 + MIR SINE MIR 18 259 -3 289 315 0 0 chr11 31275787 31275876 -119507677 + L2 LINE L2 3184 3272 0 775 285 72 0 chr11 31276312 31276533 -119507020 + MIR SINE MIR 24 260 -2 462 310 32 11 chr11 31276652 31276839 -119506714 - MER117 DNA MER1_type -5 192 2 229 363 22 15 chr11 31279198 31279333 -119504220 + L2 LINE L2 2601 2736 -578 212 327 88 93 chr11 31279484 31279710 -119503843 + MIR SINE MIR 19 243 -19 25 0 0 0 chr11 31279776 31279801 -119503752 + AT_rich Low_complexity Low_complexity 1 25 0 1126 230 50 55 chr11 31281574 31281953 -119501600 - L1M4 LINE L1 -1017 5129 4753 378 352 0 0 chr11 31282008 31282113 -119501440 + MIR SINE MIR 45 149 -59 371 222 33 11 chr11 31282263 31282353 -119501200 - Charlie8 DNA MER1_type -2222 195 104 198 0 0 0 chr11 31282442 31282464 -119501089 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 596 334 71 19 chr11 31282668 31282976 -119500577 + LTR33 LTR ERVL 1 324 -197 * 1248 246 41 22 chr11 31282953 31283315 -119500238 - MLT1A2 LTR MaLR -5 369 1 249 279 0 15 chr11 31283323 31283391 -119500162 + LTR33 LTR ERVL 305 371 -150 995 114 0 0 chr11 31284912 31285044 -119498509 - AluSp/q SINE Alu -11 302 171 1756 151 17 20 chr11 31285115 31285407 -119498146 - AluJo SINE Alu -21 291 1 841 252 46 82 chr11 31285560 31285672 -119497881 + MLT2C1 LTR ERVL 1 116 -281 1994 120 23 33 chr11 31285672 31285972 -119497581 - AluSx SINE Alu -15 297 1 841 252 46 82 chr11 31285972 31286271 -119497282 + MLT2C1 LTR ERVL 116 397 0 1878 217 35 63 chr11 31286289 31286938 -119496615 + MLT1-int LTR MaLR 27 657 -714 929 275 45 115 chr11 31286994 31287291 -119496262 + MLT1-int LTR MaLR 662 909 -462 1658 118 118 48 chr11 31287291 31287580 -119495973 - AluSc SINE Alu 0 309 1 929 275 45 115 chr11 31287580 31287795 -119495758 + MLT1-int LTR MaLR 909 1138 -233 608 302 104 24 chr11 31287895 31288107 -119495446 + MIR SINE MIR 1 229 -33 322 254 97 0 chr11 31288989 31289103 -119494450 + MIR SINE MIR 138 262 0 723 150 67 0 chr11 31289155 31289275 -119494278 - MER5A DNA MER1_type 0 189 62 6231 24 7 4 chr11 31289275 31290040 -119493513 - L1PA4 LINE L1 0 6155 5389 279 182 36 0 chr11 31290042 31290097 -119493456 - MER5A DNA MER1_type -132 57 1 296 215 15 15 chr11 31290100 31290165 -119493388 - MIR3 SINE MIR -51 157 93 1555 279 80 27 chr11 31290410 31290970 -119492583 - MLT1E LTR MaLR 0 593 4 388 267 0 0 chr11 31290978 31291064 -119492489 - MIR3 SINE MIR -46 162 77 304 325 69 107 chr11 31291563 31291852 -119491701 - L2 LINE L2 -6 3266 2989 186 242 32 16 chr11 31292852 31292914 -119490639 + MIR SINE MIR 133 195 -67 264 345 54 36 chr11 31293071 31293239 -119490314 + MIR SINE MIR 7 177 -85 189 0 0 0 chr11 31293889 31293910 -119489643 + (A)n Simple_repeat Simple_repeat 1 21 0 21 0 0 0 chr11 31294142 31294163 -119489390 + AT_rich Low_complexity Low_complexity 1 21 0 312 179 286 0 chr11 31295205 31295317 -119488236 + MLT1H1 LTR MaLR 412 555 0 1006 312 78 5 chr11 31295352 31295744 -119487809 - L2 LINE L2 -256 3057 2631 985 236 24 77 chr11 31295830 31296207 -119487346 - L1ME1 LINE L1 -31 6135 5779 1852 198 52 9 chr11 31296313 31296773 -119486780 - L1ME1 LINE L1 -374 5792 5313 2162 125 0 22 chr11 31296773 31297092 -119486461 - AluSq SINE Alu -1 312 1 1003 197 25 7 chr11 31297106 31297380 -119486173 - L1ME1 LINE L1 -875 5271 4993 2232 142 14 5 chr11 31298105 31298472 -119485081 - L1PA15 LINE L1 -3 6162 5793 934 209 40 0 chr11 31298748 31298949 -119484604 - MER3 DNA MER1_type 0 209 1 212 221 13 0 chr11 31298993 31299070 -119484483 + (TA)n Simple_repeat Simple_repeat 1 78 0 454 278 20 53 chr11 31299832 31299862 -119483691 + MIR SINE MIR 12 41 -221 2188 113 51 25 chr11 31299862 31300217 -119483336 - THE1B LTR MaLR 0 364 1 454 278 20 53 chr11 31300217 31300337 -119483216 + MIR SINE MIR 41 157 -105 180 307 93 53 chr11 31300392 31300542 -119483011 - L3 LINE CR1 -516 1061 906 553 221 90 0 chr11 31300599 31300744 -119482809 - MER103 DNA DNA -5 161 4 309 339 73 54 chr11 31300809 31301122 -119482431 - L3 LINE CR1 -643 934 616 497 291 72 29 chr11 31302062 31302340 -119481213 + L2 LINE L2 2224 2513 -801 254 324 14 0 chr11 31302374 31302445 -119481108 - MIR SINE MIR -3 259 188 422 340 31 27 chr11 31302455 31302711 -119480842 + L2 LINE L2 2531 2787 -527 231 310 78 78 chr11 31302979 31303095 -119480458 + L2 LINE L2 3104 3219 -53 1647 209 168 15 chr11 31303298 31303838 -119479715 + MLT1G LTR MaLR 1 579 -11 1028 31 78 0 chr11 31304000 31304129 -119479424 - MER85 DNA T2_type 0 139 1 291 258 22 0 chr11 31305431 31305520 -119478033 + (TA)n Simple_repeat Simple_repeat 2 92 0 383 351 23 17 chr11 31305714 31305888 -119477665 - MIR SINE MIR -70 192 18 455 227 241 64 chr11 31306081 31306464 -119477089 - MLT1H LTR MaLR -16 533 56 1865 212 73 9 chr11 31306464 31306903 -119476650 - MLT1C LTR MaLR 0 467 1 455 227 241 64 chr11 31306903 31306972 -119476581 - MLT1H LTR MaLR -493 56 1 237 325 150 0 chr11 31307064 31307184 -119476369 - MIR3 SINE MIR -67 141 4 568 182 0 125 chr11 31307261 31307453 -119476100 + MLT1D LTR MaLR 1 168 -337 4161 40 0 0 chr11 31307462 31307965 -119475588 - L1PA2 LINE L1 0 6155 5653 1681 10 0 0 chr11 31307965 31308160 -119475393 + L1PA2 LINE L1 5476 5670 -485 1341 159 55 14 chr11 31308200 31308489 -119475064 + MLT1D LTR MaLR 202 502 -3 278 225 99 86 chr11 31308500 31308651 -119474902 - MLT1L LTR MaLR -13 602 450 228 303 45 0 chr11 31308693 31308759 -119474794 - MLT1J LTR MaLR -339 172 104 269 221 107 82 chr11 31309104 31309235 -119474318 - MIR SINE MIR -68 140 18 2691 173 27 29 chr11 31309555 31310071 -119473482 + MLT2B2 LTR ERVL 1 515 0 479 321 138 49 chr11 31310369 31311034 -119472519 - L2 LINE L2 0 3313 2584 2076 122 7 0 chr11 31311441 31311765 -119471788 - AluSc SINE Alu 0 326 1 2303 124 42 19 chr11 31311804 31312182 -119471371 - MLT1B LTR MaLR -3 387 1 373 317 35 21 chr11 31312842 31312987 -119470566 + L2 LINE L2 3125 3271 -1 1974 154 3 7 chr11 31313775 31314073 -119469480 - AluJo SINE Alu -15 297 1 237 287 101 70 chr11 31314819 31315044 -119468509 - MIR SINE MIR -16 246 12 24 32 0 0 chr11 31315513 31315544 -119468009 + AT_rich Low_complexity Low_complexity 1 31 0 306 308 48 0 chr11 31316056 31316160 -119467393 - L2 LINE L2 -1 3271 3163 802 279 74 5 chr11 31316246 31316497 -119467056 + MIR SINE MIR 7 255 -7 399 319 102 0 chr11 31316661 31316896 -119466657 - LTR16A LTR ERVL -179 271 13 1712 108 0 0 chr11 31317450 31317682 -119465871 + AluY SINE Alu 69 300 -11 21 36 0 0 chr11 31319438 31319466 -119464087 + AT_rich Low_complexity Low_complexity 1 28 0 328 309 159 14 chr11 31319485 31319692 -119463861 + L1ME4a LINE L1 5317 5553 -2255 323 121 17 0 chr11 31319747 31319805 -119463748 + (TA)n Simple_repeat Simple_repeat 1 59 0 684 74 28 0 chr11 31319863 31319971 -119463582 + (TA)n Simple_repeat Simple_repeat 2 112 0 474 260 110 24 chr11 31319974 31320220 -119463333 + L1ME4a LINE L1 5623 5889 -232 1987 131 7 0 chr11 31320220 31320536 -119463017 + AluSx SINE Alu 1 318 0 224 348 45 11 chr11 31320756 31320845 -119462708 + MIR SINE MIR 17 108 -100 1621 166 25 135 chr11 31321250 31321775 -119461778 - MLT1D LTR MaLR 0 505 39 250 270 17 25 chr11 31321815 31321922 -119461631 + MLT1I LTR MaLR 45 142 -267 547 207 171 0 chr11 31321933 31322073 -119461480 + MER5A DNA MER1_type 26 189 0 5029 98 6 39 chr11 31322365 31322735 -119460818 - L1PA15 LINE L1 -1 6164 5783 429 20 0 0 chr11 31322735 31322785 -119460768 + (CA)n Simple_repeat Simple_repeat 1 50 0 5029 98 6 39 chr11 31322785 31323227 -119460326 - L1PA15 LINE L1 -382 5783 5379 1089 158 27 0 chr11 31323522 31323706 -119459847 - MER5A DNA MER1_type 0 189 1 549 58 0 47 chr11 31323748 31323834 -119459719 + L1MA9 LINE L1 5796 5877 -435 301 187 0 67 chr11 31323849 31323924 -119459629 - L1MCa LINE L1 -4362 2064 1995 198 103 0 0 chr11 31323924 31323953 -119459600 + (CA)n Simple_repeat Simple_repeat 2 30 0 2840 183 14 58 chr11 31324023 31324663 -119458890 - LTR9 LTR ERV1 0 612 1 183 156 0 0 chr11 31324694 31324726 -119458827 + (TA)n Simple_repeat Simple_repeat 1 32 0 485 216 0 65 chr11 31324743 31324882 -119458671 - L1M2 LINE L1 -520 5792 5663 182 36 0 36 chr11 31325497 31325525 -119458028 + (TTTA)n Simple_repeat Simple_repeat 4 30 0 2335 98 0 0 chr11 31325584 31325889 -119457664 - AluSc SINE Alu 0 309 5 2051 136 55 3 chr11 31325915 31326260 -119457293 - L1PA16 LINE L1 -10 6156 5794 773 200 0 0 chr11 31327932 31328062 -119455491 - FLAM_C SINE Alu -3 130 1 2111 77 35 0 chr11 31328080 31328366 -119455187 - L1PA7 LINE L1 -8 6146 5851 804 270 126 51 chr11 31328371 31328841 -119454712 - MLT1J LTR MaLR -6 505 1 427 184 40 0 chr11 31329031 31329107 -119454446 - AluJo SINE Alu -178 134 56 489 306 40 25 chr11 31330018 31330356 -119453197 - MLT1I LTR MaLR -2 407 62 861 259 31 22 chr11 31330651 31330879 -119452674 + MIR SINE MIR 3 232 -30 584 318 37 0 chr11 31331177 31331394 -119452159 + MIR SINE MIR 28 252 -10 1358 163 51 26 chr11 31332276 31332589 -119450964 - MER33 DNA MER1_type 0 324 4 44 84 0 0 chr11 31332678 31332785 -119450768 + AT_rich Low_complexity Low_complexity 1 107 0 1925 166 0 3 chr11 31332903 31333192 -119450361 + AluSx SINE Alu 1 288 -24 575 102 51 0 chr11 31333192 31333329 -119450224 + (TA)n Simple_repeat Simple_repeat 1 144 0 679 271 69 92 chr11 31333942 31334476 -119449077 - LTR33A LTR ERVL 0 523 2 343 264 248 8 chr11 31334922 31335043 -119448510 + MIR SINE MIR 29 178 -84 1743 174 0 20 chr11 31335044 31335343 -119448210 + AluSx SINE Alu 1 293 -19 2266 168 67 112 chr11 31335407 31336168 -119447385 - LTR8A LTR ERV1 0 727 1 25 31 0 0 chr11 31336203 31336235 -119447318 + AT_rich Low_complexity Low_complexity 1 32 0 28 29 0 0 chr11 31336434 31336469 -119447084 + AT_rich Low_complexity Low_complexity 1 35 0 240 349 12 12 chr11 31336600 31336683 -119446870 + L2 LINE L2 1089 1171 -2143 2815 249 200 49 chr11 31336998 31337265 -119446288 + L2 LINE L2 1447 1672 -1642 2190 123 3 3 chr11 31337265 31337575 -119445978 + AluSx SINE Alu 1 310 -2 2815 249 200 49 chr11 31337575 31338558 -119444995 + L2 LINE L2 1672 2886 -428 263 343 38 9 chr11 31338755 31338860 -119444693 - L2 LINE L2 -275 2997 2890 915 226 0 0 chr11 31339733 31339897 -119443656 + AluJb SINE Alu 134 297 -15 209 341 80 0 chr11 31342563 31342651 -119440902 + L2 LINE L2 3143 3237 -35 24 77 0 0 chr11 31343114 31343166 -119440387 + AT_rich Low_complexity Low_complexity 1 52 0 24 32 0 0 chr11 31343381 31343412 -119440141 + AT_rich Low_complexity Low_complexity 1 31 0 576 294 62 31 chr11 31343667 31343775 -119439778 - MIR3 SINE MIR -7 201 83 1715 206 19 16 chr11 31343775 31344139 -119439414 - MLT1A1 LTR MaLR 0 365 1 576 294 62 31 chr11 31344139 31344224 -119439329 - MIR3 SINE MIR -125 83 2 856 210 11 0 chr11 31344488 31344664 -119438889 + MIR SINE MIR 79 256 -6 427 269 25 8 chr11 31344751 31344870 -119438683 + MIR SINE MIR 92 212 -50 2368 92 0 0 chr11 31345174 31345468 -119438085 + AluSg SINE Alu 1 294 -16 811 272 87 8 chr11 31346190 31346444 -119437109 + MLT1J1 LTR MaLR 44 317 -129 2839 149 61 31 chr11 31346669 31347245 -119436308 - LTR59 LTR ERV1 -4 593 1 1603 155 101 4 chr11 31347259 31347537 -119436016 + AluSx SINE Alu 1 305 -7 882 196 93 10 chr11 31347606 31347810 -119435743 + MER58A DNA MER1_type 4 224 0 998 258 96 41 chr11 31348945 31349363 -119434190 + MLT1J1 LTR MaLR 1 441 -5 189 0 0 0 chr11 31349539 31349560 -119433993 + (TG)n Simple_repeat Simple_repeat 1 21 0 * 537 16 0 0 chr11 31349559 31349621 -119433932 + (GA)n Simple_repeat Simple_repeat 1 62 0 184 247 169 52 chr11 31349773 31349850 -119433703 - MIR SINE MIR -174 88 3 2016 164 41 37 chr11 31351051 31351606 -119431947 + MLT2A2 LTR ERVL 1 553 -1 1377 220 23 54 chr11 31353695 31354081 -119429472 - MLT1A2 LTR MaLR 0 374 1 1936 209 41 58 chr11 31354248 31354761 -119428792 + MLT1D LTR MaLR 2 505 0 303 293 68 54 chr11 31355019 31355166 -119428387 + L2 LINE L2 3155 3303 -10 468 0 0 0 chr11 31355166 31355218 -119428335 + (TA)n Simple_repeat Simple_repeat 2 53 0 2286 74 0 3 chr11 31355218 31355502 -119428051 - AluY SINE Alu -28 283 1 2604 99 14 8 chr11 31356254 31356616 -119426937 - THE1B LTR MaLR 0 364 1 53 30 0 0 chr11 31357425 31357492 -119426061 + AT_rich Low_complexity Low_complexity 1 67 0 1110 264 94 15 chr11 31357630 31357959 -119425594 + L1MDb LINE L1 10 364 -6045 1209 245 11 18 chr11 31358061 31358703 -119424850 + L1MDb LINE L1 2475 3219 -3187 1258 181 5 5 chr11 31358705 31358915 -119424638 + AluJb SINE Alu 80 289 -23 1921 268 50 12 chr11 31358930 31359897 -119423656 + L1MDb LINE L1 3213 4215 -2191 1018 232 20 10 chr11 31359900 31360197 -119423356 + L1MDb LINE L1 5009 5308 -1098 1757 268 80 17 chr11 31360201 31360787 -119422766 - MER76 LTR ERV -34 654 32 862 240 9 0 chr11 31360804 31361033 -119422520 + L1MDb LINE L1 5305 5535 -871 945 273 45 115 chr11 31361185 31361482 -119422071 + MLT1-int LTR MaLR 662 909 -462 1698 104 118 48 chr11 31361482 31361771 -119421782 - AluSc SINE Alu 0 309 1 945 273 45 115 chr11 31361771 31361986 -119421567 + MLT1-int LTR MaLR 909 1138 -233 608 302 104 24 chr11 31362086 31362298 -119421255 + MIR SINE MIR 1 229 -33 2061 152 36 3 chr11 31563450 31563786 -119219767 - MER7A DNA MER2_type 0 346 2 340 293 138 9 chr11 31563802 31563918 -119219635 + L2 LINE L2 3142 3272 0 2790 242 39 22 chr11 31564588 31565816 -119217737 - L1ME1 LINE L1 -8 6158 4909 872 178 32 24 chr11 31565816 31566124 -119217429 - MLT1A1 LTR MaLR 0 365 10 328 320 34 34 chr11 31566200 31566347 -119217206 + MIR SINE MIR 102 248 -14 430 348 31 19 chr11 31566441 31566602 -119216951 - L2 LINE L2 0 3272 3110 360 330 186 19 chr11 31566743 31567014 -119216539 + L2 LINE L2 2685 2998 -274 202 280 27 13 chr11 31567578 31567653 -119215900 + L2 LINE L2 3014 3089 -183 21 0 0 0 chr11 31568061 31568082 -119215471 + AT_rich Low_complexity Low_complexity 1 21 0 193 354 0 52 chr11 31568729 31568824 -119214729 + MIR SINE MIR 4 93 -115 26 0 0 0 chr11 31568964 31568990 -119214563 + AT_rich Low_complexity Low_complexity 1 26 0 664 181 50 143 chr11 31569581 31569840 -119213713 - MIR SINE MIR 0 262 28 1771 253 60 45 chr11 31569900 31570597 -119212956 + L1ME3A LINE L1 5451 6158 -12 181 405 0 0 chr11 31570999 31571073 -119212480 - L2 LINE L2 -51 3221 3148 * 304 291 64 73 chr11 31571068 31571288 -119212265 + L2 LINE L2 1043 1260 -2054 845 163 4 145 chr11 31571308 31571584 -119211969 + Charlie4a DNA MER1_type 74 310 -198 952 260 4 32 chr11 31571616 31571893 -119211660 + MLT1G LTR MaLR 30 298 -292 1047 280 17 47 chr11 31571968 31572439 -119211114 - L1MEc LINE L1 -5826 570 114 415 117 67 13 chr11 31572520 31572764 -119210789 + (TA)n Simple_repeat Simple_repeat 1 257 0 330 226 0 0 chr11 31572768 31572842 -119210711 - FLAM_A SINE Alu -66 67 4 1385 211 22 0 chr11 31573245 31573562 -119209991 + MER33 DNA MER1_type 1 324 0 209 301 21 0 chr11 31573592 31573685 -119209868 + L2 LINE L2 1991 2085 -1229 364 306 8 16 chr11 31573697 31573818 -119209735 - MER5A DNA MER1_type -2 187 68 319 298 124 70 chr11 31573856 31574212 -119209341 + L2 LINE L2 2138 2512 -802 704 197 53 43 chr11 31574268 31574456 -119209097 - MER20 DNA MER1_type -1 218 29 245 347 133 0 chr11 31575644 31575742 -119207811 + L2 LINE L2 3142 3252 -20 316 208 144 40 chr11 31577330 31577455 -119206098 + MIR SINE MIR 91 228 -34 25 0 0 0 chr11 31577718 31577743 -119205810 + AT_rich Low_complexity Low_complexity 1 25 0 1288 169 260 32 chr11 31578552 31578990 -119204563 - MER92B LTR ERV1 0 636 99 1128 185 56 56 chr11 31579263 31579587 -119203966 - LTR37A LTR ERV1 -99 327 4 24 0 0 0 chr11 31579725 31579749 -119203804 + AT_rich Low_complexity Low_complexity 1 24 0 341 316 196 0 chr11 31579772 31579905 -119203648 - MER5A DNA MER1_type -10 179 21 321 162 68 14 chr11 31580518 31580592 -119202961 - MER53 DNA DNA -111 78 1 313 164 0 0 chr11 31580688 31580743 -119202810 + FRAM/FAM SINE Alu 29 78 -97 2226 122 0 0 chr11 31581225 31581519 -119202034 + AluSx SINE Alu 1 294 -18 5279 227 41 21 chr11 31581519 31583749 -119199804 - L1PA13 LINE L1 -4309 2488 142 1146 268 45 37 chr11 31583947 31584435 -119199118 - L1ME2 LINE L1 -10 6154 5663 1268 232 109 20 chr11 31584436 31584968 -119198585 - L1ME2 LINE L1 -1154 4992 4432 1007 126 117 5 chr11 31584979 31585185 -119198368 - AluSg/x SINE Alu -1 308 80 749 201 103 60 chr11 31585325 31585397 -119198156 - L1ME2 LINE L1 -1655 4491 4424 1597 114 5 0 chr11 31585397 31585616 -119197937 - AluSq SINE Alu -2 311 92 749 201 103 60 chr11 31585616 31586010 -119197543 - L1ME2 LINE L1 -1722 4424 4005 448 172 11 0 chr11 31586031 31586124 -119197429 - L1M4 LINE L1 -1197 4949 4856 261 250 8 89 chr11 31586467 31586591 -119196962 - MLT1L LTR MaLR -384 231 118 1906 151 0 3 chr11 31586608 31586934 -119196619 - AluSx SINE Alu 0 325 1 511 262 26 2 chr11 31586953 31587124 -119196429 + L1ME1 LINE L1 6007 6178 0 196 184 0 0 chr11 31587770 31587808 -119195745 + L2 LINE L2 3272 3309 -4 2122 163 54 15 chr11 31587863 31588273 -119195280 + MSTB LTR MaLR 1 426 0 347 273 41 76 chr11 31588403 31588575 -119194978 - MLT1I LTR MaLR -10 399 234 223 216 14 14 chr11 31588800 31588874 -119194679 + A-rich Low_complexity Low_complexity 2 75 0 283 235 102 20 chr11 31589161 31589259 -119194294 + L2 LINE L2 3198 3303 -10 288 211 0 14 chr11 31589394 31589465 -119194088 - LTR33 LTR ERVL -2 519 450 2000 172 0 0 chr11 31589709 31590012 -119193541 + AluSx SINE Alu 1 303 -9 324 120 0 0 chr11 31591423 31591473 -119192080 + (T)n Simple_repeat Simple_repeat 1 50 0 1228 310 52 14 chr11 31591600 31592117 -119191436 - L2 LINE L2 -260 3053 2519 326 171 57 14 chr11 31592427 31592497 -119191056 + AluJo SINE Alu 64 136 -166 552 266 39 29 chr11 31592517 31592724 -119190829 + L2 LINE L2 3067 3275 -38 472 214 121 29 chr11 31592870 31593076 -119190477 - L1MC5 LINE L1 -49 7912 7688 277 280 80 10 chr11 31593441 31593541 -119190012 - MLT1H LTR MaLR -205 344 238 576 39 26 0 chr11 31594034 31594112 -119189441 + MADE1 DNA Mariner 1 80 0 4840 156 34 17 chr11 31594428 31595710 -119187843 - L1PA16 LINE L1 -1 6165 4873 1125 251 40 3 chr11 31595716 31596094 -119187459 - L1 LINE L1 -2832 3314 2923 1455 235 37 16 chr11 31596099 31596528 -119187025 - L1PA13 LINE L1 -4610 2228 1791 487 292 21 17 chr11 31596741 31596980 -119186573 - L1PA13 LINE L1 -5276 1562 1348 1057 323 39 42 chr11 31597020 31597543 -119186010 - L1M2 LINE L1 -6214 624 62 22 0 0 0 chr11 31597620 31597642 -119185911 + AT_rich Low_complexity Low_complexity 1 22 0 1225 259 73 153 chr11 31597773 31598634 -119184919 + L2 LINE L2 1876 2649 -665 1309 228 92 69 chr11 31598634 31599142 -119184411 + MLT2B1 LTR ERVL 1 520 0 1225 259 73 153 chr11 31599142 31599270 -119184283 + L2 LINE L2 2649 2786 -528 459 0 0 0 chr11 31599280 31599315 -119184238 + (CA)n Simple_repeat Simple_repeat 1 86 0 459 0 0 0 chr11 31599315 31599366 -119184187 + (CA)n Simple_repeat Simple_repeat 2 52 0 431 280 92 46 chr11 31599749 31600142 -119183411 - L1MC4a LINE L1 -1869 5939 5529 22 70 0 0 chr11 31600208 31600251 -119183302 + AT_rich Low_complexity Low_complexity 1 43 0 1964 156 33 0 chr11 31600456 31600758 -119182795 - AluSx SINE Alu 0 312 1 372 331 105 34 chr11 31600848 31601201 -119182352 - L1MC4a LINE L1 -1099 5047 4670 206 271 42 0 chr11 31602127 31602175 -119181378 - MIR SINE MIR -11 251 202 227 363 12 0 chr11 31602209 31602289 -119181264 + L2 LINE L2 3183 3263 -9 346 336 46 0 chr11 31604512 31604643 -119178910 - L2 LINE L2 0 3272 3136 549 326 60 73 chr11 31604663 31605357 -119178196 - L2 LINE L2 -278 2994 2315 323 356 19 44 chr11 31605442 31605602 -119177951 - MIR SINE MIR -101 161 6 845 318 139 7 chr11 31605705 31606438 -119177115 - HAL1 LINE L1 -171 2336 1507 607 304 76 29 chr11 31606491 31606833 -119176720 - HAL1 LINE L1 -1556 951 594 473 287 127 19 chr11 31607044 31607351 -119176202 - HAL1 LINE L1 -2167 340 1 1749 131 0 4 chr11 31607473 31607725 -119175828 + AluSq SINE Alu 54 304 -9 293 331 84 11 chr11 31607737 31607896 -119175657 + MIR SINE MIR 28 199 -63 182 336 42 17 chr11 31607961 31608080 -119175473 - L3b LINE CR1 -351 1232 1111 850 313 89 38 chr11 31608690 31609429 -119174124 + L1MEc LINE L1 36 812 -5584 411 310 95 65 chr11 31609570 31609802 -119173751 + L1MEc LINE L1 1623 1861 -4535 42241 39 3 1 chr11 31609805 31615948 -119167605 + L1PA4 LINE L1 1 6152 -3 496 235 136 22 chr11 31615953 31616225 -119167328 + L1MEc LINE L1 1850 2152 -4244 940 267 38 14 chr11 31616254 31616625 -119166928 + L1MEc LINE L1 2968 3347 -2868 429 257 18 18 chr11 31616848 31616957 -119166596 + MIR SINE MIR 4 112 -150 354 240 198 0 chr11 31616952 31617048 -119166505 + L2 LINE L2 3188 3302 -11 * 218 335 65 25 chr11 31617053 31617195 -119166358 - MIR SINE MIR -62 146 1 553 248 111 43 chr11 31617999 31618233 -119165320 - L1MC5 LINE L1 -50 7911 7662 1366 210 83 4 chr11 31618388 31618797 -119164756 + L1ME1 LINE L1 5204 5645 -521 556 171 16 39 chr11 31618797 31618926 -119164627 - MLT1B LTR MaLR -256 134 9 3108 77 2 19 chr11 31619016 31619443 -119164110 - L1PA10 LINE L1 -6 6162 5743 1830 197 79 5 chr11 31619474 31619890 -119163663 + L1ME1 LINE L1 5672 6118 -48 295 254 0 16 chr11 31619891 31619954 -119163599 - L2 LINE L2 -59 3254 3193 1879 161 10 72 chr11 31620112 31620503 -119163050 - MLT1B LTR MaLR -17 373 7 1600 194 47 73 chr11 31621013 31621515 -119162038 - MER41B LTR ERV1 -10 597 99 247 274 24 48 chr11 31622047 31622171 -119161382 + LTR33A LTR ERVL 402 522 -1 341 271 42 0 chr11 31622219 31622315 -119161238 - MIR3 SINE MIR -11 197 98 249 57 0 0 chr11 31623099 31623134 -119160419 + (TCTCTG)n Simple_repeat Simple_repeat 2 36 0 1539 244 3 26 chr11 31624290 31624640 -119158913 - MLT1I LTR MaLR 0 409 84 1286 208 13 20 chr11 31624798 31625101 -119158452 - L1MD2 LINE L1 -16 6343 6043 1799 189 106 5 chr11 31625107 31625680 -119157873 - L1MC4 LINE L1 -704 5655 5295 3911 26 0 0 chr11 31625687 31626147 -119157406 - L1PA2 LINE L1 -3 6152 5693 708 227 5 0 chr11 31626147 31626332 -119157221 + L1M4 LINE L1 5123 5308 -838 1734 127 8 4 chr11 31626526 31626779 -119156774 + AluSq SINE Alu 46 299 -14 15437 181 25 17 chr11 31626789 31631052 -119152501 + L1PA15 LINE L1 1864 6159 -6 21 0 0 0 chr11 31631204 31631225 -119152328 + AT_rich Low_complexity Low_complexity 1 21 0 365 268 137 55 chr11 31631360 31631689 -119151864 - L1MC4a LINE L1 -1926 5882 5527 240 336 75 0 chr11 31632486 31632593 -119150960 + L2 LINE L2 2131 2245 -1069 283 384 20 27 chr11 31632689 31632835 -119150718 + L2 LINE L2 3128 3272 0 252 340 103 26 chr11 31634229 31634385 -119149168 + MIR SINE MIR 94 261 -1 1561 212 11 45 chr11 31634671 31635049 -119148504 - MLT1A1 LTR MaLR 0 365 1 2292 71 0 17 chr11 31635376 31635673 -119147880 - AluY SINE Alu -19 292 1 1350 215 67 53 chr11 31636087 31636579 -119146974 + MER39 LTR ERV1 2 682 -25 862 191 106 0 chr11 31636664 31636853 -119146700 + MER3 DNA MER1_type 1 209 0 318 216 10 31 chr11 31637051 31637148 -119146405 + L1M4 LINE L1 2159 2253 -3893 623 290 74 57 chr11 31637152 31637734 -119145819 - L1MEd LINE L1 -4940 1179 588 443 312 30 39 chr11 31637871 31638102 -119145451 - L1MEd LINE L1 -5735 384 156 2079 152 36 3 chr11 31638898 31639234 -119144319 - MER7A DNA MER2_type 0 346 2 339 293 138 9 chr11 31639250 31639366 -119144187 + L2 LINE L2 3142 3272 0 3030 242 39 22 chr11 31640036 31641264 -119142289 - L1ME1 LINE L1 -8 6158 4909 934 178 32 24 chr11 31641264 31641572 -119141981 - MLT1A1 LTR MaLR 0 365 10 373 326 20 20 chr11 31641648 31641795 -119141758 + MIR SINE MIR 102 248 -14 430 348 31 19 chr11 31641889 31642050 -119141503 - L2 LINE L2 0 3272 3110 360 330 186 19 chr11 31642191 31642462 -119141091 + L2 LINE L2 2685 2998 -274 195 280 27 13 chr11 31643027 31643102 -119140451 + L2 LINE L2 3014 3089 -183 21 0 0 0 chr11 31643510 31643531 -119140022 + AT_rich Low_complexity Low_complexity 1 21 0 194 351 0 52 chr11 31644196 31644273 -119139280 + MIR SINE MIR 20 92 -170 26 0 0 0 chr11 31644413 31644439 -119139114 + AT_rich Low_complexity Low_complexity 1 26 0 664 181 50 143 chr11 31645030 31645289 -119138264 - MIR SINE MIR 0 262 28 1963 247 65 49 chr11 31645349 31646046 -119137507 + L1ME3A LINE L1 5451 6158 -12 181 405 0 0 chr11 31646448 31646522 -119137031 - L2 LINE L2 -51 3221 3148 * 304 291 64 73 chr11 31646517 31646737 -119136816 + L2 LINE L2 1043 1260 -2054 916 163 4 145 chr11 31646757 31647033 -119136520 + Charlie4a DNA MER1_type 74 310 -198 1046 260 4 32 chr11 31647065 31647342 -119136211 + MLT1G LTR MaLR 30 298 -292 1176 280 17 47 chr11 31647417 31647888 -119135665 - L1MEc LINE L1 -5826 570 114 415 117 67 13 chr11 31647969 31648213 -119135340 + (TA)n Simple_repeat Simple_repeat 1 257 0 353 226 0 0 chr11 31648217 31648291 -119135262 - FLAM_A SINE Alu -66 67 4 1417 211 22 0 chr11 31648694 31649011 -119134542 + MER33 DNA MER1_type 1 324 0 204 301 21 0 chr11 31649041 31649134 -119134419 + L2 LINE L2 1991 2085 -1229 359 306 8 16 chr11 31649146 31649267 -119134286 - MER5A DNA MER1_type -2 187 68 315 298 124 70 chr11 31649305 31649661 -119133892 + L2 LINE L2 2138 2512 -802 768 197 53 43 chr11 31649717 31649905 -119133648 - MER20 DNA MER1_type -1 218 29 247 347 133 0 chr11 31651093 31651191 -119132362 + L2 LINE L2 3142 3252 -20 313 208 144 40 chr11 31652779 31652904 -119130649 + MIR SINE MIR 91 228 -34 25 0 0 0 chr11 31653167 31653192 -119130361 + AT_rich Low_complexity Low_complexity 1 25 0 1435 176 229 36 chr11 31654001 31654493 -119129060 - MER92B LTR ERV1 0 636 1 1218 185 56 56 chr11 31654711 31655035 -119128518 - LTR37A LTR ERV1 -99 327 4 24 0 0 0 chr11 31655173 31655197 -119128356 + AT_rich Low_complexity Low_complexity 1 24 0 336 316 196 0 chr11 31655220 31655353 -119128200 - MER5A DNA MER1_type -10 179 21 383 160 53 13 chr11 31655968 31656043 -119127510 - MER53 DNA DNA -111 78 1 332 185 0 0 chr11 31656139 31656193 -119127360 + FRAM/FAM SINE Alu 29 82 -93 2290 56 0 62 chr11 31656676 31656982 -119126571 + AluY SINE Alu 1 287 -24 1799 146 48 10 chr11 31657139 31657433 -119126120 - AluSx SINE Alu -7 305 1 472 266 122 61 chr11 31658232 31658559 -119124994 - L1ME3 LINE L1 -277 5885 5539 399 304 101 35 chr11 31658842 31659099 -119124454 - L1ME3 LINE L1 -942 5204 4931 341 254 152 50 chr11 31659174 31659516 -119124037 - L1ME3 LINE L1 -1341 4805 4429 8810 128 67 11 chr11 31662296 31663208 -119120345 + Tigger1 DNA MER2_type 1 861 -1557 2142 123 3 0 chr11 31663208 31663516 -119120037 - AluY SINE Alu -2 309 1 8810 128 67 11 chr11 31663516 31664779 -119118774 + Tigger1 DNA MER2_type 861 2365 -53 198 0 0 0 chr11 31664779 31664801 -119118752 + (TG)n Simple_repeat Simple_repeat 1 22 0 8810 128 67 11 chr11 31664801 31664859 -119118694 + Tigger1 DNA MER2_type 2365 2418 0 3708 171 74 53 chr11 31666028 31667024 -119116529 + Tigger6a DNA MER2_type 2 1014 -69 512 158 165 0 chr11 31667284 31667417 -119116136 + MER106B DNA MER1_type 905 1059 0 1743 121 8 12 chr11 31667522 31667779 -119115774 - AluSc SINE Alu -10 299 44 21 0 0 0 chr11 31669113 31669134 -119114419 + AT_rich Low_complexity Low_complexity 1 21 0 2221 112 3 3 chr11 31670299 31670604 -119112949 + AluSg SINE Alu 1 305 -5 603 92 0 0 chr11 31671388 31671475 -119112078 + (TGGA)n Simple_repeat Simple_repeat 3 89 0 286 130 0 0 chr11 31671505 31671551 -119112002 + MLT2C1 LTR ERVL 352 397 0 959 321 82 21 chr11 31671800 31672286 -119111267 + MLT1K LTR MaLR 14 529 -59 2569 55 10 0 chr11 31672421 31672729 -119110824 - AluY SINE Alu 0 311 1 420 83 0 0 chr11 31672986 31673046 -119110507 + MLT1A1 LTR MaLR 260 319 -46 530 287 41 26 chr11 31673760 31673781 -119109772 - MIR SINE MIR -42 220 201 1956 181 14 8 chr11 31673781 31674140 -119109413 - MLT1A1 LTR MaLR -4 361 1 530 287 41 26 chr11 31674140 31674313 -119109240 - MIR SINE MIR -61 201 23 872 123 6 49 chr11 31674668 31674830 -119108723 + L1P4 LINE L1 5664 5818 -347 2204 137 26 13 chr11 31674848 31675256 -119108297 + L1PA15 LINE L1 5779 6191 0 538 315 79 9 chr11 31675604 31675794 -119107759 + MIR SINE MIR 20 228 -34 2272 97 13 0 chr11 31675794 31676092 -119107461 + AluSx SINE Alu 1 302 -10 538 315 79 9 chr11 31676092 31676117 -119107436 + MIR SINE MIR 228 250 -12 607 180 66 49 chr11 31676142 31676325 -119107228 - MER53 DNA DNA 0 189 4 247 286 16 0 chr11 31676533 31676596 -119106957 + L2 LINE L2 3245 3308 -5 1221 62 0 0 chr11 31676735 31676879 -119106674 - AluSq SINE Alu -10 303 160 921 71 0 0 chr11 31676879 31676992 -119106561 - AluSq SINE Alu -189 123 11 330 293 62 78 chr11 31677565 31677821 -119105732 + L1ME4a LINE L1 5680 5931 -190 264 146 61 24 chr11 31677885 31677967 -119105586 + L1ME4a LINE L1 6033 6117 -4 488 287 21 48 chr11 31678068 31678256 -119105297 + MIR SINE MIR 80 262 0 269 213 16 0 chr11 31678312 31678373 -119105180 + CT-rich Low_complexity Low_complexity 3 64 0 466 216 72 0 chr11 31679408 31679519 -119104034 + L2 LINE L2 3195 3313 0 492 266 43 30 chr11 31680334 31680507 -119103046 + MIR SINE MIR 8 184 -59 550 202 250 12 chr11 31680773 31680941 -119102612 + MIR SINE MIR 4 211 -51 215 210 86 123 chr11 31681935 31682016 -119101537 - MER91A DNA MER1_type -115 81 4 232 205 26 64 chr11 31682442 31682520 -119101033 + MLT1K LTR MaLR 514 588 0 338 290 30 38 chr11 31682756 31682887 -119100666 - MIR SINE MIR -59 149 20 354 283 0 0 chr11 31683080 31683172 -119100381 - MER96 DNA MER1_type? 0 175 84 418 271 41 16 chr11 31683710 31683832 -119099721 - MIR SINE MIR -68 140 16 332 301 76 14 chr11 31683924 31684068 -119099485 - MIR SINE MIR -46 216 65 1675 250 34 44 chr11 31684170 31684740 -119098813 - MLT1F1 LTR MaLR -4 563 1 272 67 67 17 chr11 31686262 31686322 -119097231 + CT-rich Low_complexity Low_complexity 4 66 0 417 241 149 62 chr11 31686356 31686551 -119097002 + L2 LINE L2 3102 3313 0 367 315 54 38 chr11 31686659 31686843 -119096710 - MIR SINE MIR -48 214 28 1030 255 170 21 chr11 31690209 31690700 -119092853 + L2 LINE L2 2743 3313 0 488 268 72 17 chr11 31690804 31691008 -119092545 - MIR SINE MIR -2 260 47 1134 169 29 5 chr11 31691031 31691238 -119092315 + MER20 DNA MER1_type 8 219 0 990 286 70 5 chr11 31691288 31691732 -119091821 + L1ME4a LINE L1 5532 6004 -117 22 35 0 0 chr11 31691793 31691822 -119091731 + AT_rich Low_complexity Low_complexity 1 29 0 358 156 0 5 chr11 31691928 31691993 -119091560 + FRAM SINE Alu 73 127 -39 184 264 66 33 chr11 31692537 31692628 -119090925 + MIR SINE MIR 28 121 -141 437 311 31 6 chr11 31694433 31694594 -119088959 + L2 LINE L2 2785 2949 -365 * 564 333 125 11 chr11 31694588 31694939 -119088614 - L2 LINE L2 -39 3274 2884 258 259 48 116 chr11 31695114 31695261 -119088292 - MIR3 SINE MIR -69 139 3 414 260 31 72 chr11 31696045 31696268 -119087285 + L1ME LINE L1 5523 5736 -385 337 260 73 27 chr11 31696361 31696511 -119087042 - MER103 DNA DNA -7 159 3 261 176 118 50 chr11 31697250 31697369 -119086184 + L1ME LINE L1 5768 5894 -227 1712 211 163 22 chr11 31697558 31697703 -119085850 - L1MD3 LINE L1 -8 7987 7864 2331 114 19 27 chr11 31697703 31698079 -119085474 + THE1C LTR MaLR 3 375 0 1712 211 163 22 chr11 31698079 31699042 -119084511 - L1MD3 LINE L1 -131 7864 6643 214 209 58 12 chr11 31699048 31699134 -119084419 + (TCTA)n Simple_repeat Simple_repeat 3 92 0 434 131 48 0 chr11 31699227 31699372 -119084181 + (TA)n Simple_repeat Simple_repeat 1 152 0 25 0 0 0 chr11 31699397 31699422 -119084131 + AT_rich Low_complexity Low_complexity 1 25 0 1481 238 151 2 chr11 31699431 31699847 -119083706 - MLT2B1 LTR ERVL -40 480 3 597 62 10 21 chr11 31699848 31699945 -119083608 + (TCTA)n Simple_repeat Simple_repeat 1 96 0 3978 228 43 41 chr11 31699946 31701274 -119082279 - L1MC4a LINE L1 -1216 6592 5262 492 225 64 77 chr11 31701533 31701734 -119081819 + MIR SINE MIR 6 202 -53 21 0 0 0 chr11 31702519 31702540 -119081013 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr11 31702746 31702767 -119080786 + (TTA)n Simple_repeat Simple_repeat 2 22 0 1571 167 4 11 chr11 31702767 31703036 -119080517 - AluJo SINE Alu -32 280 14 288 299 37 9 chr11 31703054 31703161 -119080392 + MER20B DNA MER1_type 2 111 -672 2468 203 57 69 chr11 31703180 31703915 -119079638 + MER21B LTR ERV1 13 738 -125 1063 207 66 41 chr11 31703963 31704537 -119079016 + MER20B DNA MER1_type 135 783 0 514 259 63 0 chr11 31704556 31704699 -119078854 - MIR SINE MIR -83 179 28 2109 244 30 20 chr11 31705571 31706133 -119077420 + MER69 DNA AcHobo 1 568 -1958 1691 178 99 6 chr11 31706131 31706604 -119076949 + MER69 DNA AcHobo 2010 2526 0 * 564 321 72 8 chr11 31706620 31706857 -119076696 + L3 LINE CR1 1243 1494 -83 21 0 0 0 chr11 31708173 31708194 -119075359 + AT_rich Low_complexity Low_complexity 1 21 0 344 255 49 0 chr11 31709329 31709431 -119074122 - MIR SINE MIR 0 262 156 734 243 56 19 chr11 31710152 31710366 -119073187 - MIR SINE MIR -17 245 24 24 54 0 18 chr11 31710929 31710954 -119072599 + AT_rich Low_complexity Low_complexity 1 25 -30 1613 184 0 46 chr11 31710954 31711259 -119072294 - AluJo SINE Alu -21 291 1 24 54 0 18 chr11 31711259 31711289 -119072264 + AT_rich Low_complexity Low_complexity 25 55 0 186 43 0 0 chr11 31711459 31711482 -119072071 + (CATTT)n Simple_repeat Simple_repeat 3 25 0 24 53 0 0 chr11 31711793 31711831 -119071722 + AT_rich Low_complexity Low_complexity 1 38 0 266 29 0 0 chr11 31711953 31711987 -119071566 - MADE1 DNA Mariner -41 39 6 271 224 149 45 chr11 31712198 31712332 -119071221 + L2 LINE L2 3165 3312 -1 222 265 0 41 chr11 31712645 31712694 -119070859 - L2 LINE L2 -9 3263 3217 2196 68 61 7 chr11 31713009 31713302 -119070251 - AluSc SINE Alu 0 309 1 376 347 28 2 chr11 31713323 31713477 -119070076 - MIR3 SINE MIR -77 131 9 547 318 115 41 chr11 31714033 31714583 -119068970 + L2 LINE L2 2668 3242 -71 312 148 16 0 chr11 31714587 31714648 -119068905 - MSTB1 LTR MaLR -4 428 367 1842 215 27 0 chr11 31714648 31715024 -119068529 + MST-int LTR MaLR 478 863 -788 542 149 45 4 chr11 31715024 31715142 -119068411 + MSTB LTR MaLR 234 426 0 303 270 0 0 chr11 31715144 31715218 -119068335 + L2 LINE L2 3199 3272 0 217 225 0 0 chr11 31715377 31715417 -119068136 + (TAG)n Simple_repeat Simple_repeat 1 40 0 259 313 266 21 chr11 31715417 31715609 -119067944 - MIR SINE MIR 0 262 24 282 56 0 0 chr11 31717512 31717548 -119066005 + (GA)n Simple_repeat Simple_repeat 1 36 0 494 237 157 21 chr11 31719168 31719415 -119064138 - MLT1H LTR MaLR 0 555 249 521 213 67 33 chr11 31719487 31719637 -119063916 - MLT1H LTR MaLR -394 155 1 412 243 111 71 chr11 31720017 31720243 -119063310 + MIR SINE MIR 28 262 0 684 222 113 52 chr11 31720422 31720634 -119062919 + MIR SINE MIR 20 244 -18 339 253 253 6 chr11 31722057 31722227 -119061326 + L2 LINE L2 3100 3311 -2 3715 225 87 7 chr11 31722357 31723693 -119059860 - L1ME1 LINE L1 -26 6140 4702 441 300 76 51 chr11 31723766 31724003 -119059550 - MIR SINE MIR -14 248 6 22 0 0 0 chr11 31725260 31725282 -119058271 + AT_rich Low_complexity Low_complexity 1 22 0 467 194 129 81 chr11 31725440 31725626 -119057927 - HAL1b LINE L1 -443 905 711 321 299 52 58 chr11 31725810 31725984 -119057569 - HAL1 LINE L1 -738 1769 1597 588 275 22 34 chr11 31726157 31726335 -119057218 - MIR SINE MIR -24 238 63 1305 192 45 34 chr11 31728632 31728923 -119054630 - AluJo SINE Alu -18 294 1 1862 157 0 26 chr11 31729310 31729616 -119053937 - AluJb SINE Alu -14 298 1 2299 67 0 63 chr11 31730228 31730544 -119053009 - AluY SINE Alu -15 296 1 2490 59 0 7 chr11 31731511 31731818 -119051735 + AluY SINE Alu 1 305 -6 254 159 91 0 chr11 31733333 31733377 -119050176 + L2 LINE L2 3215 3262 -10 262 312 60 9 chr11 31734382 31734515 -119049038 - MIR SINE MIR -64 198 61 183 100 0 0 chr11 31735196 31735226 -119048327 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1708 154 4 0 chr11 31736137 31736416 -119047137 + AluSx SINE Alu 1 280 -32 345 47 0 0 chr11 31736416 31736459 -119047094 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 22 0 0 0 chr11 31736459 31736481 -119047072 + AT_rich Low_complexity Low_complexity 1 22 0 184 309 194 14 chr11 31736533 31736750 -119046803 - MIR SINE MIR -5 257 2 2086 101 3 11 chr11 31736868 31737154 -119046399 - AluSc SINE Alu -22 287 4 283 258 182 67 chr11 31737206 31737415 -119046138 + MIR SINE MIR 13 245 -17 21 0 0 0 chr11 31739846 31739867 -119043686 + AT_rich Low_complexity Low_complexity 1 21 0 312 140 0 0 chr11 31745140 31745190 -119038363 + L1MB1 LINE L1 6102 6151 -17 971 203 123 5 chr11 31747668 31747880 -119035673 - MIR SINE MIR -15 247 11 810 301 62 39 chr11 31748048 31748553 -119035000 + MLT1K LTR MaLR 2 588 0 1858 205 58 52 chr11 31748568 31749070 -119034483 + MLT1D LTR MaLR 1 505 0 580 292 34 42 chr11 31750034 31750270 -119033283 - MIR SINE MIR -21 241 8 205 351 0 0 chr11 31750327 31750384 -119033169 + MER91 DNA MER1_type 2 58 -82 272 322 38 71 chr11 31750540 31750723 -119032830 + MIR3 SINE MIR 5 181 -27 282 294 0 15 chr11 31752130 31752198 -119031355 + MIR SINE MIR 16 82 -180 230 267 17 0 chr11 31752306 31752366 -119031187 + (CATATA)n Simple_repeat Simple_repeat 2 62 0 192 158 0 0 chr11 31752579 31752617 -119030936 + (CTCG)n Simple_repeat Simple_repeat 2 39 0 1803 147 42 114 chr11 31754502 31754582 -119028971 - L1MB4 LINE L1 -1 6179 6095 361 65 0 0 chr11 31754582 31754628 -119028925 + MADE1 DNA Mariner 1 46 -34 1803 147 42 114 chr11 31754628 31754951 -119028602 - L1MB4 LINE L1 -85 6095 5763 236 344 54 0 chr11 31754957 31755050 -119028503 - L2 LINE L2 -21 3251 3154 240 282 0 42 chr11 31755102 31755173 -119028380 - L2 LINE L2 0 3272 3205 199 189 0 0 chr11 31756087 31756124 -119027429 + L2 LINE L2 3187 3223 -49 237 253 152 67 chr11 31756148 31756417 -119027136 + L1ME4a LINE L1 5812 6103 -18 218 222 14 111 chr11 31756701 31756773 -119026780 - L2 LINE L2 0 3313 3249 841 153 8 0 chr11 31756940 31757064 -119026489 + FRAM SINE Alu 1 125 -51 644 242 101 22 chr11 31757163 31757390 -119026163 + MIR SINE MIR 17 261 -1 355 328 38 30 chr11 31757599 31757730 -119025823 + MIR3 SINE MIR 15 146 -62 212 175 53 35 chr11 31758143 31758200 -119025353 - L2 LINE L2 -10 3262 3205 279 318 163 31 chr11 31758498 31758627 -119024926 + L2 LINE L2 3122 3267 -5 1284 197 65 16 chr11 31758777 31759086 -119024467 + MER33 DNA MER1_type 1 324 0 483 256 62 62 chr11 31759086 31759391 -119024162 + L1ME4a LINE L1 5590 5894 -227 858 254 41 12 chr11 31759848 31760092 -119023461 + MIR SINE MIR 12 262 0 213 70 47 47 chr11 31760249 31760292 -119023261 + T-rich Low_complexity Low_complexity 4 46 0 2022 137 20 0 chr11 31760440 31760732 -119022821 + AluSx SINE Alu 1 298 -14 472 257 59 26 chr11 31761728 31761880 -119021673 - MER103 DNA DNA -1 165 9 467 263 171 0 chr11 31761922 31762074 -119021479 - MIR SINE MIR -1 261 84 2481 160 131 7 chr11 31762344 31762793 -119020760 - MLT1D LTR MaLR 0 505 1 303 293 47 0 chr11 31763181 31763287 -119020266 + MIR SINE MIR 140 250 -12 297 288 98 82 chr11 31763343 31763527 -119020026 - MIR SINE MIR -48 214 28 263 267 0 17 chr11 31764352 31764412 -119019141 - MIR SINE MIR -184 78 20 185 313 174 9 chr11 31764458 31764573 -119018980 + MIR SINE MIR 2 135 -127 216 0 0 0 chr11 31764598 31764622 -119018931 + (T)n Simple_repeat Simple_repeat 1 24 0 298 231 183 10 chr11 31764715 31764819 -119018734 + L2 LINE L2 3191 3312 -1 487 218 286 0 chr11 31764849 31764996 -119018557 - MER5A DNA MER1_type 0 189 1 382 243 312 5 chr11 31765003 31765192 -119018361 + MIR SINE MIR 16 262 0 861 251 65 9 chr11 31766448 31766663 -119016890 + MIR SINE MIR 15 241 -21 213 248 64 16 chr11 31766668 31766774 -119016779 - L2 LINE L2 -1 3312 3133 206 321 84 63 chr11 31766851 31767041 -119016512 - MIR SINE MIR -49 213 20 223 384 50 10 chr11 31767119 31767218 -119016335 + MIR SINE MIR 30 132 -76 239 356 130 27 chr11 31767382 31767528 -119016025 + L2 LINE L2 3103 3263 -9 353 197 0 0 chr11 31768385 31768446 -119015107 + MIR SINE MIR 70 130 -132 1042 212 17 68 chr11 31768526 31768595 -119014958 + MER58A DNA MER1_type 1 72 -2348 2377 87 0 0 chr11 31768595 31768893 -119014660 + AluSx SINE Alu 1 298 -14 1042 212 17 68 chr11 31768893 31769059 -119014494 + MER58A DNA MER1_type 72 224 0 307 311 59 7 chr11 31769121 31769256 -119014297 - MIR SINE MIR -119 143 2 446 178 109 0 chr11 31769478 31769579 -119013974 + MER103 DNA DNA 8 119 -47 24 32 0 0 chr11 31769737 31769768 -119013785 + AT_rich Low_complexity Low_complexity 1 31 0 433 328 96 35 chr11 31770366 31770564 -119012989 + L2 LINE L2 3053 3262 -10 1341 188 83 14 chr11 31771275 31771551 -119012002 + AluJo SINE Alu 1 295 -17 25 0 0 0 chr11 31771723 31771748 -119011805 + AT_rich Low_complexity Low_complexity 1 25 0 378 301 146 36 chr11 31771776 31771995 -119011558 - MIR SINE MIR 0 262 20 21 0 0 0 chr11 31772996 31773017 -119010536 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr11 31773188 31773209 -119010344 + AT_rich Low_complexity Low_complexity 1 21 0 327 300 200 7 chr11 31773775 31773925 -119009628 - MIR3 SINE MIR -15 193 15 221 286 62 54 chr11 31773933 31773990 -119009563 + MIR SINE MIR 31 86 -122 2987 136 36 0 chr11 31773990 31774491 -119009062 - L1MB3 LINE L1 0 6183 5665 221 286 62 54 chr11 31774491 31774545 -119009008 + MIR SINE MIR 86 143 -65 210 278 111 0 chr11 31776330 31776420 -119007133 - L2 LINE L2 -5 3267 3168 200 313 33 27 chr11 31776885 31777035 -119006518 - MER5A DNA MER1_type -4 185 35 553 252 67 96 chr11 31777187 31777230 -119006323 + L2 LINE L2 3036 3079 -234 2012 66 89 0 chr11 31777230 31777501 -119006052 - AluSp SINE Alu -18 295 1 553 252 67 96 chr11 31777501 31777727 -119005826 + L2 LINE L2 3079 3297 -16 189 0 0 0 chr11 31777731 31777752 -119005801 + (TGAA)n Simple_repeat Simple_repeat 2 22 0 962 223 28 114 chr11 31777823 31777912 -119005641 + MER34 LTR ERV1 1 96 -446 1585 171 44 24 chr11 31777912 31778205 -119005348 + AluJb SINE Alu 1 299 -13 962 223 28 114 chr11 31778205 31778685 -119004868 + MER34 LTR ERV1 96 521 -21 332 258 54 0 chr11 31778745 31778838 -119004715 - L2 LINE L2 -15 3298 3201 416 339 31 26 chr11 31778950 31779142 -119004411 - MIR SINE MIR -51 211 19 342 291 50 50 chr11 31779307 31779489 -119004064 - MIR SINE MIR -51 211 30 530 243 0 74 chr11 31779579 31779768 -119003785 + MIR3 SINE MIR 22 196 -12 216 226 226 0 chr11 31780404 31780466 -119003087 + MIR SINE MIR 36 111 -97 237 323 108 32 chr11 31780641 31780827 -119002726 + L2 LINE L2 2702 2901 -413 311 282 24 0 chr11 31781060 31781145 -119002408 + MER5A DNA MER1_type 35 121 -68 25 0 0 0 chr11 31783022 31783047 -119000506 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr11 31784035 31784056 -118999497 + AT_rich Low_complexity Low_complexity 1 21 0 310 273 65 43 chr11 31784714 31784853 -118998700 + L3 LINE CR1 1177 1318 -259 279 54 0 0 chr11 31785088 31785125 -118998428 + (TG)n Simple_repeat Simple_repeat 2 38 0 248 289 121 0 chr11 31785129 31785212 -118998341 + L3 LINE CR1 1483 1575 -2 365 311 33 22 chr11 31786139 31786289 -118997264 - MIR SINE MIR -43 165 20 212 279 0 81 chr11 31786639 31786725 -118996828 + MIR3 SINE MIR 107 185 -23 368 302 94 13 chr11 31787201 31787360 -118996193 - MER5A DNA MER1_type 0 189 18 2556 0 0 7 chr11 31787462 31787742 -118995811 - AluYa5 SINE Alu -1 310 33 1764 152 7 17 chr11 31788885 31789181 -118994372 + AluJo SINE Alu 1 293 -19 40 21 0 0 chr11 31789184 31789231 -118994322 + AT_rich Low_complexity Low_complexity 1 47 0 3634 146 27 6 chr11 31789314 31789950 -118993603 + L1MB3 LINE L1 5534 6182 -1 22 35 0 0 chr11 31791081 31791110 -118992443 + AT_rich Low_complexity Low_complexity 1 29 0 270 305 40 49 chr11 31791973 31792373 -118991180 + MLT1K LTR MaLR 149 586 -2 22 0 0 0 chr11 31792392 31792414 -118991139 + AT_rich Low_complexity Low_complexity 1 22 0 303 28 0 0 chr11 31792816 31792852 -118990701 + (CA)n Simple_repeat Simple_repeat 2 37 0 27 29 0 0 chr11 31793288 31793322 -118990231 + AT_rich Low_complexity Low_complexity 1 34 0 298 325 204 6 chr11 31793494 31793651 -118989902 + MIR SINE MIR 57 244 -18 1728 176 0 26 chr11 31793829 31794142 -118989411 - AluJb SINE Alu -7 305 1 886 153 15 2 chr11 31794264 31794466 -118989087 - MER8 DNA MER2_type 0 239 1 204 348 62 0 chr11 31794543 31794655 -118988898 + L2 LINE L2 3106 3224 -89 443 211 8 23 chr11 31796592 31796725 -118986828 + MER113 DNA MER1_type? 1 131 -390 270 0 0 0 chr11 31796774 31796804 -118986749 + (CA)n Simple_repeat Simple_repeat 2 31 0 204 40 0 0 chr11 31796803 31796828 -118986725 + (TC)n Simple_repeat Simple_repeat 1 25 0 * 249 321 27 9 chr11 31797054 31797166 -118986387 + GA-rich Low_complexity Low_complexity 6 119 0 498 268 12 61 chr11 31797876 31798040 -118985513 - MIR SINE MIR 0 262 107 197 207 61 49 chr11 31798182 31798264 -118985289 + MIR SINE MIR 179 261 -1 274 159 0 0 chr11 31798264 31798308 -118985245 + (CAT)n Simple_repeat Simple_repeat 1 44 0 814 211 19 93 chr11 31798898 31799168 -118984385 + L1MB8 LINE L1 5920 6169 -9 185 264 0 19 chr11 31799730 31799783 -118983770 - L3 LINE CR1 -676 901 850 * 254 333 121 11 chr11 31799760 31800033 -118983520 + L2 LINE L2 2594 2896 -418 424 311 54 76 chr11 31800041 31800318 -118983235 + L2 LINE L2 3001 3271 -1 1387 233 11 0 chr11 31800626 31800927 -118982626 + AluJo SINE Alu 1 304 0 2281 145 75 0 chr11 31801047 31801461 -118982092 + L1MB3 LINE L1 5737 6181 -2 486 245 31 13 chr11 31801466 31801625 -118981928 - MER112 DNA MER1_type -98 162 1 288 292 11 0 chr11 31801625 31801714 -118981839 - L1ME LINE L1 -289 5832 5743 1623 238 42 65 chr11 31802073 31802670 -118980883 + MLT1E LTR MaLR 11 593 0 754 300 56 25 chr11 31802916 31803421 -118980132 + MLT1K LTR MaLR 4 586 -2 3924 241 67 32 chr11 31803823 31806341 -118977212 - L1ME1 LINE L1 -4 6096 3488 793 282 112 39 chr11 31806359 31806816 -118976737 - L1ME1 LINE L1 -5575 495 6 234 315 27 18 chr11 31809388 31809499 -118974054 - MIR SINE MIR -40 222 111 265 253 77 44 chr11 31810628 31810810 -118972743 - L1ME4a LINE L1 -1 6120 5933 27 0 0 0 chr11 31811913 31811940 -118971613 + AT_rich Low_complexity Low_complexity 1 27 0 526 303 108 26 chr11 31813664 31813895 -118969658 + MIR SINE MIR 13 262 0 187 177 63 114 chr11 31813883 31813962 -118969591 - MIR SINE MIR -100 162 88 * 369 252 70 26 chr11 31815545 31815660 -118967893 - L2 LINE L2 0 3272 3153 1699 160 25 0 chr11 31816039 31816314 -118967239 - AluJb SINE Alu -30 282 1 293 212 77 49 chr11 31816577 31816692 -118966861 + MIR SINE MIR 42 153 -92 205 229 0 71 chr11 31816742 31816812 -118966741 + MIR SINE MIR 147 211 -51 231 204 0 0 chr11 31817556 31817605 -118965948 + T-rich Low_complexity Low_complexity 1 49 0 255 312 35 29 chr11 31819890 31819992 -118963561 - MIR SINE MIR -95 113 22 622 255 75 0 chr11 31820051 31820239 -118963314 - MIR SINE MIR 0 262 61 813 273 32 19 chr11 31821340 31821556 -118961997 + MIR SINE MIR 30 248 -14 2121 31 47 0 chr11 31821673 31821931 -118961622 + AluY SINE Alu 34 303 -8 377 286 9 27 chr11 31822172 31822284 -118961269 - MIR3 SINE MIR -45 163 54 396 345 18 12 chr11 31822342 31822507 -118961046 - MIR SINE MIR -66 196 31 394 339 44 28 chr11 31822562 31822742 -118960811 + MER5A DNA MER1_type 6 188 -1 1312 164 47 106 chr11 31822920 31822994 -118960559 - MER2 DNA MER2_type 0 345 268 2358 112 0 0 chr11 31822994 31823306 -118960247 + AluSx SINE Alu 1 312 0 1312 164 47 106 chr11 31823306 31823591 -118959962 - MER2 DNA MER2_type -77 268 7 228 67 0 0 chr11 31826235 31826265 -118957288 + (TTTC)n Simple_repeat Simple_repeat 2 31 0 1725 121 143 0 chr11 31826843 31827108 -118956445 + AluSq SINE Alu 1 303 -10 226 267 33 0 chr11 31827133 31827193 -118956360 - MER113 DNA MER1_type? -6 515 454 192 258 97 65 chr11 31827456 31827549 -118956004 + L2 LINE L2 3193 3288 -25 1344 173 17 0 chr11 31827806 31828037 -118955516 - MER46A DNA MER2_type -1 235 1 465 257 143 11 chr11 31829053 31829228 -118954325 + MIR SINE MIR 65 262 0 231 382 20 0 chr11 31829279 31829381 -118954172 + L2 LINE L2 3168 3271 -1 259 356 34 7 chr11 31829561 31829707 -118953846 + MIR SINE MIR 109 258 -4 323 238 105 19 chr11 31830649 31830754 -118952799 - MIR SINE MIR -65 143 30 2745 97 11 3 chr11 31831549 31831921 -118951632 + THE1C LTR MaLR 1 375 0 24 32 0 0 chr11 31832714 31832745 -118950808 + AT_rich Low_complexity Low_complexity 1 31 0 283 247 108 21 chr11 31833022 31833115 -118950438 + L2 LINE L2 3197 3297 -16 240 308 11 33 chr11 31834327 31834418 -118949135 + MIR3 SINE MIR 9 97 -111 2024 119 0 20 chr11 31834562 31834884 -118948669 - AluSx SINE Alu 0 316 1 262 59 0 0 chr11 31836990 31837024 -118946529 + MLT1B LTR MaLR 3 36 -354 497 136 11 0 chr11 31837040 31837128 -118946425 + MLT1B LTR MaLR 301 389 -1 189 364 40 20 chr11 31837411 31837510 -118946043 + L2 LINE L2 3137 3237 -35 249 159 0 0 chr11 31837791 31837835 -118945718 + (TGAA)n Simple_repeat Simple_repeat 1 44 0 304 313 147 18 chr11 31838298 31838461 -118945092 - MIR3 SINE MIR -15 193 10 21 0 0 0 chr11 31839249 31839270 -118944283 + AT_rich Low_complexity Low_complexity 1 21 0 506 306 64 30 chr11 31839765 31840030 -118943523 - L2 LINE L2 -9 3304 3031 1885 143 7 36 chr11 31841259 31841567 -118941986 + AluSx SINE Alu 1 299 -13 236 310 0 0 chr11 31842295 31842366 -118941187 + A-rich Low_complexity Low_complexity 2 72 0 451 267 81 62 chr11 31842572 31842830 -118940723 + MLT1L LTR MaLR 5 267 -348 365 245 119 26 chr11 31842976 31843127 -118940426 + MLT1L LTR MaLR 446 610 -5 356 291 53 46 chr11 31843308 31843360 -118940193 - MIR SINE MIR -6 256 206 1801 170 24 0 chr11 31843360 31843654 -118939899 + AluSx SINE Alu 1 301 -11 356 291 53 46 chr11 31843654 31843752 -118939801 - MIR SINE MIR -56 206 105 311 354 0 10 chr11 31843884 31844018 -118939535 - MER5A DNA MER1_type -38 151 8 574 259 47 26 chr11 31844550 31844743 -118938810 - MER117 DNA MER1_type 0 197 1 1617 192 45 3 chr11 31847539 31847831 -118935722 + AluJb SINE Alu 1 304 -8 210 246 0 0 chr11 31847873 31847934 -118935619 + (TA)n Simple_repeat Simple_repeat 1 61 0 248 234 0 0 chr11 31847983 31848030 -118935523 + (TAG)n Simple_repeat Simple_repeat 1 47 0 271 312 0 0 chr11 31848275 31848352 -118935201 + (CTA)n Simple_repeat Simple_repeat 1 77 0 216 241 17 52 chr11 31849356 31849414 -118934139 + MER91A DNA MER1_type 18 73 -123 223 286 0 0 chr11 31849582 31849631 -118933922 + (TGG)n Simple_repeat Simple_repeat 3 51 0 202 307 86 49 chr11 31850370 31850533 -118933020 + MIR SINE MIR 67 235 -27 1318 197 70 27 chr11 31850666 31850924 -118932629 + L1MC4 LINE L1 7636 7859 -136 339 25 0 0 chr11 31850924 31850964 -118932589 + (CA)n Simple_repeat Simple_repeat 2 41 0 1318 197 70 27 chr11 31850964 31851096 -118932457 + L1MC4 LINE L1 7859 7984 -11 1301 71 0 0 chr11 31852162 31852317 -118931236 - AluSp SINE Alu -7 306 152 188 143 18 125 chr11 31852381 31852437 -118931116 - L2 LINE L2 -264 3049 3000 2320 102 3 10 chr11 31852509 31852822 -118930731 + AluSq SINE Alu 1 311 -2 180 240 31 83 chr11 31852866 31852962 -118930591 - L2 LINE L2 -444 2870 2780 400 203 130 16 chr11 31853046 31853169 -118930384 + MIR SINE MIR 126 262 0 329 300 10 10 chr11 31853604 31853704 -118929849 + MIR SINE MIR 57 156 -106 588 118 0 0 chr11 31855173 31855258 -118928295 + AluSg/x SINE Alu 212 296 -16 2351 44 0 83 chr11 31855431 31855770 -118927783 - AluY SINE Alu 0 311 1 23 0 0 0 chr11 31855907 31855930 -118927623 + AT_rich Low_complexity Low_complexity 1 23 0 256 267 23 12 chr11 31856029 31856115 -118927438 + GA-rich Low_complexity Low_complexity 1 87 0 199 213 21 117 chr11 31856491 31856585 -118926968 - MIR SINE MIR -66 196 112 234 277 14 28 chr11 31856713 31856801 -118926752 + L1ME4a LINE L1 5979 6066 -55 2084 132 3 7 chr11 31856801 31857097 -118926456 - AluSx SINE Alu -17 295 1 234 277 14 28 chr11 31857097 31857149 -118926404 + L1ME4a LINE L1 6066 6117 -4 706 190 7 36 chr11 31857160 31857297 -118926256 - FLAM_A SINE Alu 0 133 1 295 250 0 0 chr11 31857316 31857380 -118926173 + MARNA DNA Mariner 341 404 -182 411 308 51 34 chr11 31857381 31857673 -118925880 + L1ME4a LINE L1 5533 5829 -292 333 275 190 20 chr11 31857911 31858064 -118925489 + L1ME4a LINE L1 5776 5902 -219 189 0 0 0 chr11 31858064 31858085 -118925468 + (TG)n Simple_repeat Simple_repeat 2 22 0 333 275 190 20 chr11 31858085 31858226 -118925327 + L1ME4a LINE L1 5902 6120 -1 215 300 14 0 chr11 31858874 31858944 -118924609 - L2 LINE L2 0 3272 3202 206 375 0 16 chr11 31859100 31859228 -118924325 - L2 LINE L2 -299 2973 2848 347 286 25 75 chr11 31860564 31860725 -118922828 + MIR SINE MIR 104 256 -6 521 313 14 0 chr11 31860745 31860892 -118922661 + MIR3 SINE MIR 47 195 -13 322 264 50 50 chr11 31861070 31861210 -118922343 - MIR SINE MIR -35 227 88 242 284 142 45 chr11 31861654 31861830 -118921723 + MIR SINE MIR 1 193 -69 284 264 45 27 chr11 31862573 31862683 -118920870 - MIR SINE MIR -65 197 86 318 329 112 0 chr11 31862911 31863072 -118920481 + MIR3 SINE MIR 21 199 -9 296 323 44 30 chr11 31863155 31863452 -118920101 + L1ME LINE L1 5525 5825 -296 23 0 0 0 chr11 31865318 31865341 -118918212 + AT_rich Low_complexity Low_complexity 1 23 0 192 179 0 0 chr11 31866195 31866234 -118917319 + GA-rich Low_complexity Low_complexity 2 40 0 321 299 4 135 chr11 31868018 31868153 -118915400 - L3 LINE CR1 -1 1576 1486 1696 190 0 25 chr11 31868153 31868469 -118915084 - AluJo SINE Alu -4 308 1 321 299 4 135 chr11 31868469 31868577 -118914976 - L3 LINE CR1 -91 1486 1365 406 303 138 7 chr11 31868659 31868804 -118914749 + MIR SINE MIR 86 249 -13 900 303 16 4 chr11 31868811 31869062 -118914491 + MIR SINE MIR 2 255 -7 248 282 60 43 chr11 31869114 31869231 -118914322 + MIR SINE MIR 100 218 -44 500 316 21 21 chr11 31869270 31869460 -118914093 - L3 LINE CR1 -226 1351 1162 1837 159 48 0 chr11 31870137 31870432 -118913121 - AluSx SINE Alu -3 309 1 186 286 20 0 chr11 31870624 31870673 -118912880 - L3 LINE CR1 -3 1574 1525 1872 154 6 49 chr11 31870872 31871197 -118912356 + AluJo SINE Alu 1 311 -1 21 0 0 0 chr11 31871428 31871449 -118912104 + AT_rich Low_complexity Low_complexity 1 21 0 435 297 42 18 chr11 31871828 31871993 -118911560 + MIR3 SINE MIR 7 175 -33 231 36 0 0 chr11 31872330 31872358 -118911195 + (T)n Simple_repeat Simple_repeat 1 28 0 348 320 0 0 chr11 31873105 31873205 -118910348 - L2 LINE L2 0 3272 3173 188 360 0 44 chr11 31873516 31873630 -118909923 - L2 LINE L2 -343 2929 2821 324 264 143 7 chr11 31874128 31874268 -118909285 - MIR SINE MIR -35 227 69 1522 106 179 0 chr11 31874414 31874660 -118908893 - AluSq SINE Alu -13 290 1 275 260 52 13 chr11 31875645 31875722 -118907831 - MIR SINE MIR -160 102 23 210 306 16 0 chr11 31875829 31875891 -118907662 - L2 LINE L2 0 3272 3210 836 183 153 7 chr11 31876112 31876386 -118907167 + LTR37A LTR ERV1 87 400 -26 660 300 4 36 chr11 31876570 31876759 -118906794 + MIR SINE MIR 16 196 -66 1782 156 7 27 chr11 31876759 31877060 -118906493 - AluJo SINE Alu -17 295 1 660 300 4 36 chr11 31877060 31877125 -118906428 + MIR SINE MIR 196 262 0 275 337 65 0 chr11 31879624 31879716 -118903837 - MIR SINE MIR -79 129 32 549 251 43 21 chr11 31879722 31879909 -118903644 - MIR SINE MIR 0 262 72 395 277 82 38 chr11 31880257 31880416 -118903137 + MIR SINE MIR 18 183 -79 331 298 41 41 chr11 31880964 31881125 -118902428 - L1ME4a LINE L1 -70 6051 5888 240 35 0 0 chr11 31881125 31881154 -118902399 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 331 298 41 41 chr11 31881154 31881287 -118902266 - L1ME4a LINE L1 -232 5889 5757 1935 142 14 14 chr11 31883039 31883335 -118900218 - AluSx SINE Alu -16 296 1 209 274 219 0 chr11 31883855 31883928 -118899625 - MIR SINE MIR -66 142 54 2568 115 3 3 chr11 31883980 31884344 -118899209 + THE1B LTR MaLR 1 364 0 299 263 0 74 chr11 31884720 31884815 -118898738 - MIR3 SINE MIR -6 202 115 464 257 128 39 chr11 31885146 31885325 -118898228 + MIR SINE MIR 68 262 0 193 234 64 0 chr11 31885686 31885733 -118897820 + L2 LINE L2 3223 3272 0 26 0 0 0 chr11 31885750 31885776 -118897777 + AT_rich Low_complexity Low_complexity 1 26 0 241 341 11 0 chr11 31886554 31886642 -118896911 - MARNA DNA Mariner -373 213 125 186 133 0 0 chr11 31886658 31886688 -118896865 + (CA)n Simple_repeat Simple_repeat 2 31 0 22 56 0 0 chr11 31886689 31886725 -118896828 + AT_rich Low_complexity Low_complexity 1 36 0 1670 200 3 19 chr11 31886910 31887262 -118896291 - AluJb SINE Alu 0 347 1 41 36 0 0 chr11 31888208 31888263 -118895290 + AT_rich Low_complexity Low_complexity 1 55 0 25 0 0 0 chr11 31888843 31888868 -118894685 + AT_rich Low_complexity Low_complexity 1 25 0 220 229 16 16 chr11 31891247 31891308 -118892245 + MIR SINE MIR 82 142 -66 26 0 0 0 chr11 31891393 31891419 -118892134 + AT_rich Low_complexity Low_complexity 1 26 0 328 268 143 9 chr11 31891529 31891641 -118891912 - L2 LINE L2 0 3313 3187 1556 141 23 4 chr11 31891736 31891998 -118891555 - MER1B DNA MER1_type 0 339 73 623 304 4 83 chr11 31892904 31893170 -118890383 - MIR SINE MIR -10 252 8 180 0 0 0 chr11 31895188 31895208 -118888345 + (TTCA)n Simple_repeat Simple_repeat 1 20 0 420 246 0 97 chr11 31895208 31895342 -118888211 - L2 LINE L2 -13 3300 3180 280 293 75 60 chr11 31896628 31896761 -118886792 - MIR SINE MIR 0 262 128 1583 176 85 12 chr11 31898619 31898959 -118884594 - MLT1A1 LTR MaLR 0 365 1 255 354 95 7 chr11 31901442 31901589 -118881964 - MIR3 SINE MIR -9 199 40 6769 112 29 46 chr11 31901651 31902214 -118881339 + Tigger3b DNA MER2_type 1 572 -2456 970 124 7 7 chr11 31902214 31902367 -118881186 - L1PB3 LINE L1 -1 6153 6001 6769 112 29 46 chr11 31902367 31903048 -118880505 + Tigger3b DNA MER2_type 572 1224 -7 439 279 131 33 chr11 31903918 31904101 -118879452 - MIR SINE MIR -61 201 1 620 251 68 52 chr11 31904596 31904847 -118878706 - MIR SINE MIR -1 261 7 184 304 145 0 chr11 31905568 31905637 -118877916 + L2 LINE L2 3158 3236 -36 336 244 210 8 chr11 31905660 31905779 -118877774 - MIR3 SINE MIR -9 199 57 216 182 0 23 chr11 31906514 31906540 -118877013 + (CAGA)n Simple_repeat Simple_repeat 2 28 -16 192 77 0 0 chr11 31906540 31906566 -118876987 + (TAGG)n Simple_repeat Simple_repeat 2 27 0 216 182 0 23 chr11 31906566 31906583 -118876970 + (CAGA)n Simple_repeat Simple_repeat 28 44 0 186 288 121 0 chr11 31908471 31908537 -118875016 + MIR SINE MIR 76 149 -113 312 27 0 0 chr11 31911669 31911706 -118871847 + (T)n Simple_repeat Simple_repeat 1 37 0 344 22 22 0 chr11 31912882 31912927 -118870626 + (CA)n Simple_repeat Simple_repeat 2 47 0 40 0 0 0 chr11 31913914 31913954 -118869599 + GC_rich Low_complexity Low_complexity 1 40 0 23 54 0 0 chr11 31914678 31914715 -118868838 + GC_rich Low_complexity Low_complexity 1 37 0 233 185 15 15 chr11 31914822 31914887 -118868666 + (CGAG)n Simple_repeat Simple_repeat 2 66 0 231 140 0 0 chr11 31915466 31915516 -118868037 + (CA)n Simple_repeat Simple_repeat 2 51 0 1927 161 30 19 chr11 31918939 31919367 -118864186 - LTR56 LTR ERV1 -3 442 10 246 286 56 92 chr11 31919763 31919959 -118863594 - L2 LINE L2 0 3313 3084 436 288 33 118 chr11 31920047 31920498 -118863055 - L2 LINE L2 -408 2906 2494 411 182 61 47 chr11 31921507 31921655 -118861898 - L1ME4a LINE L1 0 6121 5972 842 258 22 0 chr11 31921706 31921884 -118861669 + MIR SINE MIR 51 232 -30 243 0 0 0 chr11 31925085 31925112 -118858441 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 21 57 0 0 chr11 31925278 31925313 -118858240 + AT_rich Low_complexity Low_complexity 1 35 0 999 270 68 83 chr11 31926050 31926654 -118856899 + MLT1G1 LTR MaLR 1 595 0 28 0 0 0 chr11 31927384 31927412 -118856141 + AT_rich Low_complexity Low_complexity 1 28 0 27 62 0 0 chr11 31928058 31928106 -118855447 + AT_rich Low_complexity Low_complexity 1 48 0 894 153 134 64 chr11 31928238 31928351 -118855202 - MER20 DNA MER1_type 0 219 115 3270 145 12 20 chr11 31928351 31928951 -118854602 - L1MB3 LINE L1 0 6183 5589 894 153 134 64 chr11 31928951 31929039 -118854514 - MER20 DNA MER1_type -104 115 4 334 300 22 11 chr11 31929459 31929549 -118854004 + MIR SINE MIR 23 113 -149 616 203 81 46 chr11 31929551 31929716 -118853837 + MER3 DNA MER1_type 5 180 -29 2500 134 5 3 chr11 31929716 31930090 -118853463 + THE1C LTR MaLR 1 375 0 616 203 81 46 chr11 31930090 31930121 -118853432 + MER3 DNA MER1_type 180 208 -1 476 313 8 0 chr11 31930131 31930265 -118853288 + MIR SINE MIR 120 254 -8 181 200 156 0 chr11 31930274 31930319 -118853234 + MIR SINE MIR 75 126 -82 351 324 71 8 chr11 31930793 31930949 -118852604 - MIR SINE MIR -62 146 4 468 336 99 9 chr11 31931167 31931399 -118852154 - MIR SINE MIR -4 258 6 427 179 13 0 chr11 31932734 31932812 -118850741 + MER116 DNA Mariner 2 80 0 345 222 40 16 chr11 31933431 31933557 -118849996 - L1MC4 LINE L1 0 8042 7914 304 337 27 43 chr11 31933999 31934183 -118849370 + L2 LINE L2 2591 2771 -543 2170 131 0 0 chr11 31934547 31934844 -118848709 + AluSx SINE Alu 1 297 -15 684 310 179 8 chr11 31934846 31935468 -118848085 + L2 LINE L2 2531 3272 -41 23 0 0 0 chr11 31935685 31935708 -118847845 + AT_rich Low_complexity Low_complexity 1 23 0 622 276 79 64 chr11 31935854 31936184 -118847369 + MER102b DNA MER1_type 1 335 -6 243 0 0 0 chr11 31936220 31936247 -118847306 + (T)n Simple_repeat Simple_repeat 1 27 0 259 237 0 17 chr11 31936387 31936446 -118847107 - MER69 DNA AcHobo -1 2525 2468 21 23 0 47 chr11 31936485 31936501 -118847052 + AT_rich Low_complexity Low_complexity 1 16 -25 2213 98 0 49 chr11 31936501 31936826 -118846727 + AluSg SINE Alu 1 309 -1 21 23 0 47 chr11 31936826 31936852 -118846701 + AT_rich Low_complexity Low_complexity 16 41 0 436 277 0 0 chr11 31936852 31936946 -118846607 - MER69 DNA AcHobo -1130 96 3 1138 223 143 53 chr11 31937186 31937599 -118845954 + LTR33A LTR ERVL 66 515 -8 446 203 23 30 chr11 31938005 31938138 -118845415 - L1MC5 LINE L1 -48 7913 7782 273 57 0 0 chr11 31938192 31938215 -118845338 + (TG)n Simple_repeat Simple_repeat 1 58 0 273 57 0 0 chr11 31938215 31938250 -118845303 + (TG)n Simple_repeat Simple_repeat 2 36 0 676 210 0 0 chr11 31938266 31938385 -118845168 - FRAM SINE Alu -30 146 28 4329 230 85 73 chr11 31938401 31939278 -118844275 - L1ME2 LINE L1 -32 6066 5201 1455 162 3 110 chr11 31939278 31939605 -118843948 - AluJb SINE Alu -6 296 5 4329 230 85 73 chr11 31939605 31940811 -118842742 - L1ME2 LINE L1 -897 5201 4010 876 199 6 6 chr11 31940811 31940977 -118842576 - FRAM SINE Alu 0 166 1 4329 230 85 73 chr11 31940977 31942232 -118841321 - L1ME2 LINE L1 -2088 4010 2686 22 35 0 0 chr11 31942232 31942261 -118841292 + AT_rich Low_complexity Low_complexity 1 29 0 5211 179 22 26 chr11 31942261 31942520 -118841033 - L1MA10 LINE L1 -29 6305 6047 1947 127 0 23 chr11 31942520 31942820 -118840733 - AluSg SINE Alu -17 293 1 5211 179 22 26 chr11 31942820 31944011 -118839542 - L1MA10 LINE L1 -287 6047 4853 248 250 68 11 chr11 31944022 31944110 -118839443 - L1ME2 LINE L1 -5478 592 500 226 325 113 53 chr11 31944336 31944487 -118839066 - L2 LINE L2 -5 3308 3149 1429 199 39 23 chr11 31944571 31944877 -118838676 - AluJo SINE Alu -1 311 1 193 362 0 29 chr11 31944992 31945061 -118838492 - L2 LINE L2 -1 3312 3246 235 374 30 8 chr11 31945177 31945308 -118838245 - MIR SINE MIR -109 153 20 556 293 42 59 chr11 31946688 31946975 -118836578 + MLT1J LTR MaLR 230 511 0 183 304 118 39 chr11 31946983 31947085 -118836468 - L2 LINE L2 -12 3260 3151 490 279 106 55 chr11 31947395 31947846 -118835707 - L1MEd LINE L1 -4862 1257 784 1304 174 32 124 chr11 31948437 31948839 -118834714 + MLT1A1 LTR MaLR 1 365 0 471 350 102 41 chr11 31948907 31949050 -118834503 + L2 LINE L2 2526 2659 -613 1018 155 4 105 chr11 31949050 31949289 -118834264 - MER20 DNA MER1_type -4 215 1 471 350 102 41 chr11 31949289 31949586 -118833967 + L2 LINE L2 2659 2987 -285 22 80 0 0 chr11 31950100 31950150 -118833403 + AT_rich Low_complexity Low_complexity 1 50 0 1463 164 6 74 chr11 31951139 31951450 -118832103 - L1MC1 LINE L1 -6 6327 6038 253 305 12 0 chr11 31951453 31951535 -118832018 - L1MC2 LINE L1 -277 6067 5985 * 3081 167 96 26 chr11 31951521 31952364 -118831189 - L1MCa LINE L1 -3915 2692 1761 968 75 0 8 chr11 31952364 31952497 -118831056 - Alu SINE Alu -12 298 167 1077 25 0 0 chr11 31952498 31952619 -118830934 + AluY SINE Alu 11 131 -180 2994 142 42 13 chr11 31952647 31953036 -118830517 - L1MCa LINE L1 -4819 1607 1192 193 0 61 30 chr11 31953036 31953069 -118830484 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2994 142 42 13 chr11 31953069 31953301 -118830252 - L1MCa LINE L1 -5234 1192 968 2526 196 163 33 chr11 31953304 31953942 -118829611 - L1MCa LINE L1 -5686 740 20 199 258 79 79 chr11 31956705 31956794 -118826759 + MER5B DNA MER1_type 66 154 -24 * 362 261 54 18 chr11 31956715 31956826 -118826727 - MER5A DNA MER1_type -73 116 2 185 336 89 94 chr11 31957328 31957703 -118825850 - L2 LINE L2 -115 3157 2788 415 270 103 59 chr11 31958013 31958053 -118825500 + MLT1L LTR MaLR 219 256 -359 1714 210 96 25 chr11 31958053 31958524 -118825029 - MLT1D LTR MaLR -1 504 1 415 270 103 59 chr11 31958524 31958824 -118824729 + MLT1L LTR MaLR 256 574 -41 1465 113 122 60 chr11 31958846 31959165 -118824388 + MER44D DNA MER2_type 1 609 0 386 275 92 0 chr11 31959285 31959405 -118824148 - MIR3 SINE MIR -41 167 37 389 303 13 23 chr11 31962411 31962544 -118821009 - MIR SINE MIR -57 151 32 210 71 0 0 chr11 31965987 31966015 -118817538 + (TTTTG)n Simple_repeat Simple_repeat 1 28 0 210 171 0 0 chr11 31966155 31966190 -118817363 + A-rich Low_complexity Low_complexity 1 35 0 233 203 29 58 chr11 31967836 31967905 -118815648 + MIR SINE MIR 18 84 -124 675 213 44 16 chr11 31967968 31968151 -118815402 - MER53 DNA DNA -1 188 1 3749 105 20 2 chr11 31968495 31969039 -118814514 + MER41A LTR ERV1 1 554 0 4141 142 30 57 chr11 31969039 31969837 -118813716 + MER41A-int LTR ERV1 1 690 -5256 2572 151 55 66 chr11 31969838 31970482 -118813071 + MER41A-int LTR ERV1 650 1300 -4646 2258 111 7 0 chr11 31970482 31970789 -118812764 + AluSx SINE Alu 1 309 -3 2572 151 55 66 chr11 31970789 31971144 -118812409 + MER41A-int LTR ERV1 1300 2962 -2984 * 7007 129 12 29 chr11 31971138 31972440 -118811113 + MER41A-int LTR ERV1 2807 4086 -929 5638 105 9 7 chr11 31972473 31973337 -118810216 + MER41A-int LTR ERV1 5057 5922 -24 605 144 21 0 chr11 31973337 31973434 -118810119 + AluSg/x SINE Alu 205 303 -9 2953 86 14 2 chr11 31973461 31973890 -118809663 + MER41A LTR ERV1 1 434 -120 2095 82 10 56 chr11 31973894 31974197 -118809356 - AluSq SINE Alu -24 289 1 180 0 0 0 chr11 31975701 31975721 -118807832 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1149 185 21 24 chr11 31976343 31976630 -118806923 - L1ME2 LINE L1 -213 5951 5666 3474 158 52 15 chr11 31976790 31977507 -118806046 - L1MB4 LINE L1 -13 6167 5425 278 267 91 12 chr11 31977510 31977675 -118805878 - L1ME LINE L1 -419 5702 5525 2296 109 0 7 chr11 31977905 31978207 -118805346 - AluSx SINE Alu -12 300 1 2097 158 14 3 chr11 31978298 31978659 -118804894 + MLT1A1 LTR MaLR 1 365 0 321 234 133 70 chr11 31978720 31978925 -118804628 - MIR SINE MIR -30 232 19 24 32 0 0 chr11 31979375 31979406 -118804147 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr11 31979571 31979593 -118803960 + AT_rich Low_complexity Low_complexity 1 22 0 444 326 11 129 chr11 31979737 31980087 -118803466 - L2 LINE L2 -49 3223 2915 1644 168 3 39 chr11 31980114 31980424 -118803129 + AluJb SINE Alu 1 299 -13 316 102 29 9 chr11 31980424 31980536 -118803017 + GA-rich Low_complexity Low_complexity 1 114 0 1322 22 5 32 chr11 31980539 31980724 -118802829 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 180 0 0 0 chr11 31980726 31980746 -118802807 + (GGAA)n Simple_repeat Simple_repeat 3 22 0 342 354 52 21 chr11 31980779 31980881 -118802672 - L2 LINE L2 -463 2851 2754 2459 76 0 0 chr11 31980881 31981185 -118802368 + AluY SINE Alu 1 304 -7 342 354 52 21 chr11 31981185 31981407 -118802146 - L2 LINE L2 -560 2754 2517 1123 200 23 0 chr11 31981493 31981708 -118801845 + MER58A DNA MER1_type 1 220 -4 291 93 0 0 chr11 31981725 31981768 -118801785 + (TG)n Simple_repeat Simple_repeat 2 44 0 * 459 92 0 0 chr11 31981767 31981832 -118801721 + (TA)n Simple_repeat Simple_repeat 2 66 0 2165 147 72 3 chr11 31981849 31982238 -118801315 - MSTA LTR MaLR -9 419 4 2043 140 41 0 chr11 31982289 31982631 -118800922 + Tigger2 DNA MER2_type 2361 2716 -2 324 0 0 0 chr11 31982631 31982667 -118800886 + (TG)n Simple_repeat Simple_repeat 1 36 0 256 318 118 12 chr11 31982682 31982927 -118800626 - L2 LINE L2 -944 2370 2100 1774 212 49 24 chr11 31982982 31983435 -118800118 - MLT1C LTR MaLR -3 464 1 23 0 0 0 chr11 31984439 31984462 -118799091 + AT_rich Low_complexity Low_complexity 1 23 0 301 269 26 0 chr11 31984479 31984557 -118798996 + L1MC3 LINE L1 6572 6651 -1134 700 309 87 28 chr11 31985400 31985869 -118797684 - L1M4 LINE L1 -745 5401 4905 676 257 43 43 chr11 31985978 31986254 -118797299 - L1M4 LINE L1 -1933 4213 3938 371 299 14 0 chr11 31986389 31986535 -118797018 - MLT1J2 LTR MaLR -232 214 63 2161 249 108 21 chr11 31986647 31987353 -118796200 - MER21B LTR ERV1 -54 809 43 358 239 0 0 chr11 31987356 31987427 -118796126 - MER21B LTR ERV1 -774 89 19 2219 121 7 0 chr11 31987519 31987825 -118795728 + AluSx SINE Alu 4 311 -1 441 54 0 0 chr11 31987920 31987976 -118795577 + (TA)n Simple_repeat Simple_repeat 2 57 0 249 83 0 0 chr11 31988025 31988061 -118795492 + (GA)n Simple_repeat Simple_repeat 1 36 0 1572 197 14 25 chr11 31988062 31988346 -118795207 - AluJo SINE Alu -31 281 1 725 201 51 26 chr11 31988383 31988617 -118794936 + L1MD3 LINE L1 7680 7995 0 291 279 115 77 chr11 31988772 31988955 -118794598 + MIR SINE MIR 67 256 -6 180 0 0 0 chr11 31988958 31988978 -118794575 + (CAT)n Simple_repeat Simple_repeat 2 21 0 593 287 14 91 chr11 31989432 31989707 -118793846 + LTR33 LTR ERVL 242 495 -26 652 340 78 13 chr11 31989975 31990207 -118793346 - MIR SINE MIR -3 259 13 1593 260 55 34 chr11 31990265 31990772 -118792781 - LTR33 LTR ERVL -1 520 3 314 243 96 52 chr11 31991809 31991945 -118791608 + MER20B DNA MER1_type 29 170 -613 612 265 133 33 chr11 31992744 31992955 -118790598 + MIR SINE MIR 29 260 -2 2707 90 8 13 chr11 31993059 31993436 -118790117 - THE1C LTR MaLR 0 375 1 360 73 18 0 chr11 31993698 31993753 -118789800 - MADE1 DNA Mariner 0 80 25 251 270 0 0 chr11 31993764 31993827 -118789726 + MLT1J LTR MaLR 111 173 -338 377 285 165 15 chr11 31994275 31994542 -118789011 + MLT1I LTR MaLR 25 331 -78 213 225 0 0 chr11 31994594 31994634 -118788919 + GA-rich Low_complexity Low_complexity 3 42 0 1000 280 55 41 chr11 31995295 31996082 -118787471 - L2 LINE L2 0 3313 2485 501 251 246 0 chr11 31996118 31996305 -118787248 + MIR SINE MIR 28 260 -2 392 0 21 0 chr11 31996734 31996782 -118786771 + (CA)n Simple_repeat Simple_repeat 2 50 0 696 298 36 4 chr11 31997019 31997267 -118786286 - MIR SINE MIR -2 260 5 1149 199 55 16 chr11 31997810 31998122 -118785431 + MER33 DNA MER1_type 1 324 0 411 256 67 18 chr11 31998758 31998922 -118784631 + LTR16C LTR ERVL 305 476 -15 210 253 145 0 chr11 31998969 31999052 -118784501 + MIR SINE MIR 120 214 -48 1366 222 34 58 chr11 31999976 32000391 -118783162 + MLT1D LTR MaLR 1 405 -100 209 231 103 77 chr11 32001146 32001224 -118782329 - L2 LINE L2 -7 3265 3186 258 291 154 9 chr11 32001462 32001600 -118781953 - MIR SINE MIR -78 130 32 23034 53 2 1 chr11 32002146 32005144 -118778409 + L1PA4 LINE L1 1 3001 -3145 1554 40 0 0 chr11 32005142 32005341 -118778212 + L1P LINE L1 4551 4749 -1397 * 19434 35 0 1 chr11 32005341 32008489 -118775064 + L1PA4 LINE L1 3006 6153 -2 375 333 0 0 chr11 32008653 32008755 -118774798 + MIR SINE MIR 38 139 -69 918 222 43 30 chr11 32008798 32009028 -118774525 - MIR SINE MIR -15 247 15 646 311 31 15 chr11 32009038 32009298 -118774255 - MLT1L LTR MaLR -2 613 350 181 248 83 64 chr11 32009822 32009931 -118773622 + L2 LINE L2 2890 3000 -272 4249 172 13 9 chr11 32010055 32010821 -118772732 + Tigger7 DNA MER2_type 2 770 -1717 2028 123 57 3 chr11 32010821 32011172 -118772381 + Tigger7 DNA MER2_type 2118 2487 0 2757 83 8 0 chr11 32011420 32011780 -118771773 + THE1B LTR MaLR 2 364 0 229 328 0 0 chr11 32012437 32012501 -118771052 + MIR3 SINE MIR 138 201 -7 600 191 124 62 chr11 32013162 32013403 -118770150 + ORSL DNA AcHobo 1 256 -19 258 265 108 35 chr11 32013699 32013871 -118769682 - MIR SINE MIR 0 262 29 363 335 91 15 chr11 32014668 32014865 -118768688 + MIR SINE MIR 49 260 -2 2282 240 50 24 chr11 32015221 32015962 -118767591 - MER20B DNA MER1_type -22 761 2 23 86 0 0 chr11 32016245 32016303 -118767250 + AT_rich Low_complexity Low_complexity 1 58 0 11665 202 160 55 chr11 32016304 32017846 -118765707 + L1P3 LINE L1 687 2067 -4394 730 171 0 0 chr11 32017846 32017963 -118765590 - AluSg/x SINE Alu -14 298 182 11665 202 160 55 chr11 32017963 32018930 -118764623 + L1P3 LINE L1 2067 2932 -3529 1551 112 0 0 chr11 32018930 32019135 -118764418 + AluSq SINE Alu 1 205 -108 11665 202 160 55 chr11 32019135 32020498 -118763055 + L1P3 LINE L1 2932 5067 -1394 562 259 29 7 chr11 32020751 32020890 -118762663 + MIR SINE MIR 50 191 -71 588 257 118 37 chr11 32020937 32021412 -118762141 - MLT1K LTR MaLR -34 554 7 266 231 46 0 chr11 32021612 32021677 -118761876 + L2 LINE L2 3205 3272 0 515 281 58 29 chr11 32021791 32021851 -118761702 - MER5A DNA MER1_type -4 185 128 2134 117 38 0 chr11 32021851 32022142 -118761411 + AluSx SINE Alu 1 302 -10 515 281 58 29 chr11 32022142 32022252 -118761301 - MER5A DNA MER1_type -61 128 10 1962 130 67 9 chr11 32022256 32022601 -118760952 - MLT1A1 LTR MaLR 0 365 1 6048 97 22 15 chr11 32023116 32024180 -118759373 + L1PA11 LINE L1 5104 6173 -1 23 0 0 0 chr11 32025356 32025379 -118758174 + AT_rich Low_complexity Low_complexity 1 23 0 29 78 0 0 chr11 32026232 32026296 -118757257 + AT_rich Low_complexity Low_complexity 1 64 0 279 284 164 0 chr11 32026499 32026615 -118756938 + L2 LINE L2 3138 3272 0 330 277 0 12 chr11 32026637 32026720 -118756833 + MIR3 SINE MIR 110 191 -17 273 261 151 42 chr11 32026738 32026857 -118756696 + MER5A DNA MER1_type 55 186 -3 2676 209 55 151 chr11 32028082 32028788 -118754765 + L1MC4a LINE L1 5851 6275 -1533 2068 124 33 15 chr11 32028788 32029119 -118754434 - MER1B DNA MER1_type 0 337 1 2676 209 55 151 chr11 32029119 32030059 -118753494 + L1MC4a LINE L1 6275 7304 -504 515 159 9 18 chr11 32030063 32030176 -118753377 + L1MA9 LINE L1 5922 6033 -279 207 162 0 0 chr11 32030178 32030215 -118753338 + (CATATA)n Simple_repeat Simple_repeat 6 42 0 3379 149 61 38 chr11 32030218 32030935 -118752618 - L1MA9 LINE L1 -36 6276 5543 1407 221 48 61 chr11 32030928 32031249 -118752304 + L1MD3 LINE L1 7536 7851 -144 * 2605 94 8 24 chr11 32031249 32031630 -118751923 - THE1C LTR MaLR 0 375 1 1407 221 48 61 chr11 32031630 32031764 -118751789 + L1MD3 LINE L1 7851 7985 -10 276 77 0 0 chr11 32031986 32032025 -118751528 + (CA)n Simple_repeat Simple_repeat 2 40 0 484 307 31 47 chr11 32032126 32032435 -118751118 - MLT1I LTR MaLR -77 332 59 443 288 125 53 chr11 32032505 32032769 -118750784 + L2 LINE L2 3030 3312 -1 227 231 19 0 chr11 32032821 32032873 -118750680 + L2 LINE L2 3220 3272 0 22 0 0 0 chr11 32033652 32033674 -118749879 + AT_rich Low_complexity Low_complexity 1 22 0 685 231 0 0 chr11 32034562 32034683 -118748870 - MER58A DNA MER1_type 0 121 1 384 280 14 21 chr11 32034705 32034848 -118748705 - L1ME LINE L1 -439 5682 5541 355 287 85 27 chr11 32035153 32035485 -118748068 - MLT1I LTR MaLR -3 447 80 1376 214 31 22 chr11 32035485 32035840 -118747713 - L1MC4a LINE L1 -435 7373 7016 4888 150 13 33 chr11 32036003 32036923 -118746630 + L1MA3 LINE L1 5403 6304 -1 281 179 18 0 chr11 32036978 32037034 -118746519 - Alu SINE Alu -2 300 244 917 136 8 0 chr11 32037034 32037166 -118746387 - AluSq/x SINE Alu -179 133 1 1452 180 27 4 chr11 32037168 32037189 -118746364 - AluJo SINE Alu -8 304 285 195 42 0 0 chr11 32037189 32037213 -118746340 + (TCCC)n Simple_repeat Simple_repeat 1 24 0 * 870 101 20 7 chr11 32037212 32037361 -118746192 + (TTTC)n Simple_repeat Simple_repeat 3 153 0 1452 180 27 4 chr11 32037213 32037595 -118745958 - AluJo SINE Alu -27 285 43 21 82 0 0 chr11 32037895 32037944 -118745609 + AT_rich Low_complexity Low_complexity 1 49 0 374 303 66 13 chr11 32038761 32038912 -118744641 + MIR SINE MIR 34 191 -71 226 213 0 53 chr11 32039550 32039644 -118743909 - L1MC4 LINE L1 -1339 6703 6615 238 286 0 0 chr11 32039854 32039910 -118743643 - MER91B DNA MER1_type -133 57 2 283 312 0 37 chr11 32039932 32040041 -118743512 - L1MC4 LINE L1 -2020 5788 5684 226 238 32 0 chr11 32040940 32041003 -118742550 - LTR48 LTR ERV1 -618 169 105 274 324 7 44 chr11 32041290 32041426 -118742127 - MIR3 SINE MIR -6 202 72 378 315 62 28 chr11 32041631 32041809 -118741744 + MIR SINE MIR 9 192 -70 199 286 27 109 chr11 32041961 32042003 -118741550 + MIR3 SINE MIR 74 118 -90 1640 158 40 20 chr11 32042003 32042301 -118741252 + AluJb SINE Alu 1 304 -8 199 286 27 109 chr11 32042301 32042405 -118741148 + MIR3 SINE MIR 118 208 0 * 341 220 248 28 chr11 32042396 32042505 -118741048 - MER5A DNA MER1_type 0 178 46 414 340 7 7 chr11 32042517 32042661 -118740892 + MIR SINE MIR 119 262 0 454 295 104 36 chr11 32042773 32042966 -118740587 + MER102a DNA MER1_type 125 330 0 209 238 0 0 chr11 32044742 32044784 -118738769 + T-rich Low_complexity Low_complexity 1 42 0 300 27 0 0 chr11 32046360 32046397 -118737156 + (CA)n Simple_repeat Simple_repeat 2 38 0 29 47 0 0 chr11 32046448 32046491 -118737062 + AT_rich Low_complexity Low_complexity 1 43 0 261 0 0 0 chr11 32046966 32046995 -118736558 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1186 267 110 7 chr11 32048490 32048935 -118734618 + LTR16C LTR ERVL 1 491 0 377 67 17 0 chr11 32049076 32049136 -118734417 - L1PB2 LINE L1 -2 6149 6089 336 262 13 7 chr11 32049604 32049700 -118733853 + MIR SINE MIR 49 142 -66 205 246 82 16 chr11 32049934 32049995 -118733558 + MIR SINE MIR 82 146 -62 1354 234 39 20 chr11 32050078 32050433 -118733120 - L1ME1 LINE L1 -8 6158 5797 1028 246 30 4 chr11 32050667 32050903 -118732650 - MLT1F LTR MaLR -45 497 256 * 1634 227 37 15 chr11 32050891 32051297 -118732256 + MLT1C LTR MaLR 52 466 -1 474 139 0 0 chr11 32051297 32051369 -118732184 - MLT1F LTR MaLR -470 72 1 841 335 90 19 chr11 32051370 32051956 -118731597 - L2 LINE L2 -190 3082 2454 300 355 36 29 chr11 32052368 32052506 -118731047 + L2 LINE L2 3132 3270 -2 455 323 56 41 chr11 32052663 32052858 -118730695 - L2 LINE L2 -2 3311 3114 925 78 7 14 chr11 32052979 32053120 -118730433 + (GAAA)n Simple_repeat Simple_repeat 4 143 0 2222 119 3 6 chr11 32053125 32053437 -118730116 + AluSx SINE Alu 1 311 -1 562 254 95 32 chr11 32053554 32053838 -118729715 - L1ME4a LINE L1 -203 5918 5617 194 329 37 0 chr11 32054513 32054595 -118728958 - MIR3 SINE MIR -9 199 115 213 350 77 8 chr11 32054893 32055010 -118728543 - MIR3 SINE MIR -72 136 12 1474 108 45 18 chr11 32055033 32055256 -118728297 + MER30 DNA MER1_type 2 230 0 229 278 48 0 chr11 32055264 32055341 -118728212 + MIR SINE MIR 71 144 -64 2061 119 19 19 chr11 32056410 32056534 -118727019 + AluSg SINE Alu 1 124 -186 270 0 0 0 chr11 32056534 32056564 -118726989 + (CAAAA)n Simple_repeat Simple_repeat 5 34 0 2061 119 19 19 chr11 32056564 32056749 -118726804 + AluSg SINE Alu 123 310 0 430 253 45 65 chr11 32056845 32056999 -118726554 + MIR SINE MIR 56 206 -56 206 158 26 0 chr11 32059024 32059062 -118724491 - MIR SINE MIR -13 249 211 207 268 42 14 chr11 32059749 32059820 -118723733 - MIR SINE MIR -108 154 82 1851 136 7 4 chr11 32060368 32060648 -118722905 + AluJb SINE Alu 22 302 -10 343 280 69 0 chr11 32060714 32060815 -118722738 + L1M4c LINE L1 1559 1852 -891 1120 309 102 30 chr11 32061590 32062747 -118720806 + L1M4c LINE L1 2819 4058 -2324 401 220 92 21 chr11 32062791 32062932 -118720621 - MLT1L LTR MaLR -26 589 439 378 212 0 35 chr11 32063169 32063254 -118720299 - MLT1L LTR MaLR -530 85 4 464 309 85 8 chr11 32063254 32063490 -118720063 + L1M4c LINE L1 4073 4326 -2056 229 200 29 14 chr11 32063517 32063587 -118719966 + (TA)n Simple_repeat Simple_repeat 2 72 0 376 194 0 0 chr11 32064689 32064751 -118718802 - MER45 DNA AcHobo 0 1581 1520 316 200 0 0 chr11 32064761 32064811 -118718742 - MER45 DNA AcHobo -903 50 1 456 276 21 14 chr11 32065060 32065205 -118718348 - MIR SINE MIR -5 257 112 1297 240 64 25 chr11 32065456 32065848 -118717705 + MLT1I LTR MaLR 1 407 -2 896 252 65 9 chr11 32065996 32066226 -118717327 - MIR SINE MIR 0 262 20 1942 13 35 0 chr11 32066229 32066460 -118717093 - L1PA2 LINE L1 0 6155 5917 2482 11 11 0 chr11 32066460 32066747 -118716806 + L1PA2 LINE L1 5624 5913 -242 741 250 60 63 chr11 32067081 32067381 -118716172 + MLT1K LTR MaLR 275 573 -15 826 285 42 0 chr11 32068123 32068337 -118715216 - MER58A DNA MER1_type 0 224 2 281 272 111 38 chr11 32068699 32068952 -118714601 + MIR SINE MIR 20 248 -14 281 342 26 9 chr11 32068973 32069087 -118714466 - MIR SINE MIR -145 117 2 354 313 0 0 chr11 32069592 32069691 -118713862 - MIR3 SINE MIR -18 190 92 879 119 21 62 chr11 32069773 32069966 -118713587 + MER53 DNA DNA 1 185 -4 192 125 0 0 chr11 32070058 32070090 -118713463 + (A)n Simple_repeat Simple_repeat 1 32 0 256 236 11 56 chr11 32070389 32070478 -118713075 - HAL1 LINE L1 -6 2501 2417 838 133 41 77 chr11 32070506 32070702 -118712851 + MER53 DNA DNA 1 189 0 362 301 0 26 chr11 32070786 32070899 -118712654 + MER81 DNA DNA 2 111 -3 469 329 26 0 chr11 32072393 32072545 -118711008 - MIR3 SINE MIR -37 171 16 371 365 18 6 chr11 32073028 32073195 -118710358 - L3 LINE CR1 -68 1509 1341 273 321 83 0 chr11 32073378 32073487 -118710066 + LTR33A LTR ERVL 71 188 -335 348 257 59 0 chr11 32073562 32073663 -118709890 + LTR33 LTR ERVL 415 521 0 277 331 38 87 chr11 32073663 32074032 -118709521 - L3 LINE CR1 -363 1214 864 246 81 0 0 chr11 32075253 32075290 -118708263 + (CA)n Simple_repeat Simple_repeat 2 38 0 1388 206 42 83 chr11 32076017 32076473 -118707080 + MLT2C2 LTR ERVL 1 437 -27 461 308 79 40 chr11 32076529 32076756 -118706797 - MIR SINE MIR -1 261 26 514 323 95 4 chr11 32076873 32077105 -118706448 - MIR SINE MIR -6 256 4 346 286 9 9 chr11 32080207 32080312 -118703241 + MLT1I LTR MaLR 99 203 -206 2098 182 28 9 chr11 32080424 32080863 -118702690 - LTR45B LTR ERV1 -43 446 1 421 232 26 80 chr11 32081185 32081336 -118702217 - MIR3 SINE MIR -63 145 3 518 287 112 26 chr11 32081941 32082365 -118701188 + L2 LINE L2 2684 3168 -145 348 83 0 0 chr11 32082365 32082413 -118701140 + (TG)n Simple_repeat Simple_repeat 2 49 0 518 287 112 26 chr11 32082413 32082573 -118700980 + L2 LINE L2 3168 3313 0 1158 243 68 66 chr11 32082951 32083469 -118700084 - LTR33 LTR ERVL 0 521 3 942 271 29 16 chr11 32083477 32083721 -118699832 - MIR SINE MIR -13 249 3 366 277 114 31 chr11 32084293 32084625 -118698928 - L1ME4a LINE L1 -46 6075 5695 293 274 17 42 chr11 32085733 32085856 -118697697 - MIR SINE MIR -84 124 4 267 244 78 9 chr11 32086258 32086373 -118697180 + LTR67 LTR ERVL 420 542 -15 270 214 0 0 chr11 32086616 32086672 -118696881 - MIR3 SINE MIR -14 194 139 22 0 0 0 chr11 32086931 32086953 -118696600 + AT_rich Low_complexity Low_complexity 1 22 0 740 265 109 0 chr11 32087637 32087848 -118695705 + MIR SINE MIR 28 261 -1 206 238 12 119 chr11 32088866 32088950 -118694603 + MIR3 SINE MIR 109 183 -25 327 330 73 52 chr11 32089122 32089452 -118694101 - L1MEc LINE L1 -4185 2211 1875 384 322 121 0 chr11 32089465 32089754 -118693799 - L1MEc LINE L1 -4576 1820 1497 445 256 33 33 chr11 32090021 32090236 -118693317 - L1MEc LINE L1 -5007 1198 984 1056 256 94 46 chr11 32091207 32091726 -118691827 + MLT1G LTR MaLR 1 574 -16 243 286 174 10 chr11 32092164 32092262 -118691291 - L3 LINE CR1 -4 1573 1460 968 290 106 64 chr11 32092587 32093118 -118690435 - L3 LINE CR1 -393 1184 632 605 230 132 0 chr11 32093372 32093524 -118690029 - MER5B DNA MER1_type -6 172 1 285 286 93 21 chr11 32093544 32093685 -118689868 + MIR SINE MIR 13 162 -61 212 376 128 0 chr11 32094525 32094642 -118688911 - L2 LINE L2 -2 3270 3139 609 196 78 11 chr11 32094663 32094842 -118688711 + L1MD3 LINE L1 7796 7986 -9 2372 70 0 0 chr11 32094843 32095163 -118688390 + AluY SINE Alu 1 320 0 1983 187 55 59 chr11 32095337 32095730 -118687823 - MLT1D LTR MaLR 0 505 113 2302 103 3 22 chr11 32095730 32096049 -118687504 + AluSp SINE Alu 1 313 0 1983 187 55 59 chr11 32096049 32096162 -118687391 - MLT1D LTR MaLR -392 113 1 1188 232 82 12 chr11 32096288 32096629 -118686924 - MLT1B LTR MaLR -25 365 1 190 351 81 40 chr11 32096668 32096842 -118686711 - L2 LINE L2 -536 2778 2598 2324 105 3 6 chr11 32096858 32097171 -118686382 + AluSx SINE Alu 1 312 0 334 274 85 52 chr11 32097237 32097390 -118686163 + L1MEd LINE L1 48 205 -5914 482 236 118 15 chr11 32097730 32097925 -118685628 + HAL1 LINE L1 1151 1365 -1142 463 219 26 0 chr11 32098071 32098185 -118685368 + HAL1 LINE L1 2243 2359 -148 1070 310 126 44 chr11 32098225 32099139 -118684414 + L2 LINE L2 440 1428 -1886 499 198 0 45 chr11 32099148 32099259 -118684294 + MIR SINE MIR 52 157 -105 964 187 61 98 chr11 32099415 32099741 -118683812 + MER2 DNA MER2_type 31 344 -1 595 313 97 37 chr11 32099742 32100062 -118683491 + L2 LINE L2 1477 1821 -1493 1377 208 20 41 chr11 32100062 32100356 -118683197 - AluJo SINE Alu -24 288 1 595 313 97 37 chr11 32100356 32100386 -118683167 + L2 LINE L2 1821 1848 -1466 602 192 8 8 chr11 32100488 32100618 -118682935 - MLT1A2 LTR MaLR 0 374 245 837 244 74 0 chr11 32100618 32100835 -118682718 + MIR SINE MIR 30 262 0 248 293 140 47 chr11 32100831 32100981 -118682572 + L2 LINE L2 3149 3312 -1 * 197 224 165 12 chr11 32101020 32101105 -118682448 - L2 LINE L2 -1329 1985 1888 257 241 52 0 chr11 32101151 32101209 -118682344 - MIR SINE MIR -76 186 126 215 30 0 30 chr11 32104532 32104565 -118678988 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1961 105 91 0 chr11 32104685 32104970 -118678583 - AluY SINE Alu 0 311 1 409 333 98 11 chr11 32105040 32105304 -118678249 - L1 LINE L1 -3090 3056 2770 2337 91 3 0 chr11 32105916 32106214 -118677339 + AluSx SINE Alu 2 300 -12 21 0 0 0 chr11 32106866 32106887 -118676666 + AT_rich Low_complexity Low_complexity 1 21 0 962 216 58 149 chr11 32107997 32108681 -118674872 - L1ME3A LINE L1 -15 6155 5562 2184 103 0 0 chr11 32108681 32108990 -118674563 - AluSg SINE Alu 0 309 1 962 216 58 149 chr11 32108990 32109155 -118674398 - L1ME3A LINE L1 -608 5562 5383 391 221 168 38 chr11 32109237 32109393 -118674160 - MIR SINE MIR -43 165 16 188 307 40 59 chr11 32109385 32109486 -118674067 - L2 LINE L2 -603 2711 2613 * 571 236 124 12 chr11 32109730 32109972 -118673581 - L1ME4a LINE L1 -79 6042 5774 312 245 20 31 chr11 32109974 32110072 -118673481 - L1ME4a LINE L1 -392 5729 5633 533 234 0 19 chr11 32111014 32111148 -118672405 + MER5A DNA MER1_type 4 134 -55 307 200 0 0 chr11 32111182 32111237 -118672316 + MER5A DNA MER1_type 1 55 -134 1271 151 30 17 chr11 32111238 32111470 -118672083 + AluJo SINE Alu 66 300 -12 611 236 16 8 chr11 32111470 32111593 -118671960 + MER5A DNA MER1_type 66 189 0 925 190 20 25 chr11 32111625 32111825 -118671728 - MER58A DNA MER1_type -24 200 2 592 247 28 67 chr11 32111838 32112016 -118671537 + MER5B DNA MER1_type 5 175 -3 202 220 119 0 chr11 32113195 32113254 -118670299 - MIR3 SINE MIR -52 156 91 1414 88 51 225 chr11 32113473 32113846 -118669707 + AluSx SINE Alu 1 308 -4 358 253 0 24 chr11 32113853 32113936 -118669617 - MER5A DNA MER1_type -60 129 49 495 287 45 49 chr11 32115300 32115523 -118668030 + L1ME4a LINE L1 5255 5476 -2332 56 0 0 0 chr11 32115530 32115586 -118667967 + AT_rich Low_complexity Low_complexity 1 56 0 298 256 97 88 chr11 32115598 32115885 -118667668 + L1ME4a LINE L1 5497 5791 -330 3883 208 52 19 chr11 32115885 32116720 -118666833 - MER21B LTR ERV1 -1 862 1 298 256 97 88 chr11 32116720 32116866 -118666687 + L1ME4a LINE L1 5791 5934 -187 1611 187 58 32 chr11 32116874 32117173 -118666380 - MLT1B LTR MaLR 0 390 77 2321 158 10 2 chr11 32117173 32117573 -118665980 + MER57A LTR ERV1 1 403 0 1611 187 58 32 chr11 32117573 32117653 -118665900 - MLT1B LTR MaLR -313 77 1 1589 194 43 7 chr11 32117682 32118161 -118665392 + AluSq SINE Alu 1 490 0 251 175 18 0 chr11 32118176 32118233 -118665320 + GA-rich Low_complexity Low_complexity 4 61 0 257 355 28 0 chr11 32118496 32118603 -118664950 + MIR SINE MIR 97 206 -56 216 0 0 0 chr11 32118637 32118661 -118664892 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1093 74 0 0 chr11 32118661 32118789 -118664764 - AluYb8 SINE Alu -187 131 1 2369 66 3 7 chr11 32118798 32119100 -118664453 - AluY SINE Alu -10 301 1 2219 94 0 10 chr11 32119123 32119422 -118664131 - AluSg SINE Alu -14 296 1 300 299 47 0 chr11 32119859 32119966 -118663587 + MLT1K LTR MaLR 135 246 -342 494 287 0 0 chr11 32120045 32120167 -118663386 + MER94 DNA DNA 13 134 0 247 306 102 6 chr11 32120211 32120368 -118663185 + MLT1K LTR MaLR 363 534 -54 2526 137 44 0 chr11 32120906 32121316 -118662237 - MSTA LTR MaLR 0 428 1 3105 194 62 67 chr11 32121656 32122728 -118660825 - L1MC4 LINE L1 0 8042 6976 414 283 49 54 chr11 32123588 32123772 -118659781 + MIR3 SINE MIR 19 201 -7 257 402 57 33 chr11 32124248 32124703 -118658850 + L2 LINE L2 2047 2512 -802 373 224 0 0 chr11 32124830 32124915 -118658638 + MIR SINE MIR 169 253 -9 275 275 55 83 chr11 32125076 32125294 -118658259 - MLT1J2 LTR MaLR -205 245 34 2262 58 0 7 chr11 32125578 32125855 -118657698 - AluSg SINE Alu -35 275 1 25 0 0 0 chr11 32125855 32125880 -118657673 + AT_rich Low_complexity Low_complexity 1 25 0 207 146 0 0 chr11 32126032 32126073 -118657480 + (CA)n Simple_repeat Simple_repeat 2 42 0 271 238 9 9 chr11 32126160 32126265 -118657288 + CT-rich Low_complexity Low_complexity 4 108 0 2037 117 0 31 chr11 32127610 32127952 -118655601 - AluSg SINE Alu 0 335 3 341 230 128 128 chr11 32128054 32128241 -118655312 - MIR SINE MIR -22 240 54 963 199 5 5 chr11 32128245 32128441 -118655112 + MER6B DNA MER2_type 12 207 -3 630 259 109 23 chr11 32128874 32129094 -118654459 + L2 LINE L2 3075 3313 0 402 259 29 65 chr11 32129276 32129415 -118654138 - MIR SINE MIR -109 153 20 294 280 11 0 chr11 32130475 32130568 -118652985 + L1ME4a LINE L1 5959 6052 -69 1828 249 63 28 chr11 32130926 32131529 -118652024 + MLT1E3 LTR MaLR 1 624 0 343 267 23 61 chr11 32131730 32131861 -118651692 - MIR SINE MIR 0 262 137 432 206 0 22 chr11 32131922 32132014 -118651539 + MER21B LTR ERV1 1 90 -773 2924 234 74 8 chr11 32132036 32132805 -118650748 + MER21B LTR ERV1 19 838 -25 1260 162 26 0 chr11 32133463 32133728 -118649825 - MER33 DNA MER1_type 0 324 53 6997 65 5 3 chr11 32133757 32135581 -118647972 - L1PA8 LINE L1 -10 6162 4339 404 188 47 0 chr11 32135713 32135798 -118647755 + MER106B DNA MER1_type 896 984 -75 301 136 0 17 chr11 32135800 32135859 -118647694 - MLT2D LTR ERVL -2 518 461 256 171 13 40 chr11 32135946 32136022 -118647531 - MER106B DNA MER1_type -81 978 905 594 198 21 37 chr11 32136125 32136283 -118647270 + MER33 DNA MER1_type 1 147 -101 1022 224 34 81 chr11 32136301 32136684 -118646869 - MLT2D LTR ERVL -49 365 1 727 153 127 21 chr11 32136888 32137077 -118646476 - MER3 DNA MER1_type 0 209 1 837 283 5 14 chr11 32137093 32137312 -118646241 + MIR SINE MIR 46 262 0 433 256 62 80 chr11 32138852 32139028 -118644525 + MIR3 SINE MIR 36 208 0 583 58 35 0 chr11 32140951 32141038 -118642515 + (TTCC)n Simple_repeat Simple_repeat 4 93 0 930 164 7 7 chr11 32141422 32141568 -118641985 + FRAM SINE Alu 1 146 -30 543 107 0 0 chr11 32141569 32141653 -118641900 + (TC)n Simple_repeat Simple_repeat 2 85 0 21 36 0 0 chr11 32141653 32141681 -118641872 + AT_rich Low_complexity Low_complexity 1 28 0 2301 90 0 0 chr11 32141795 32142083 -118641470 - AluY SINE Alu -21 290 3 276 149 0 0 chr11 32143170 32143217 -118640336 + (TTCC)n Simple_repeat Simple_repeat 2 48 0 189 352 42 0 chr11 32144445 32144516 -118639037 + MIR SINE MIR 23 96 -166 210 220 34 17 chr11 32144610 32144669 -118638884 + CT-rich Low_complexity Low_complexity 5 64 0 244 260 82 0 chr11 32145110 32145183 -118638370 - MIR SINE MIR -94 114 36 287 307 0 0 chr11 32145818 32145893 -118637660 + L2 LINE L2 3188 3262 -10 744 12 0 0 chr11 32146213 32146298 -118637255 + (GGAAA)n Simple_repeat Simple_repeat 1 85 0 267 157 0 0 chr11 32146298 32146349 -118637204 + GA-rich Low_complexity Low_complexity 2 52 0 311 43 0 22 chr11 32146358 32146404 -118637149 + (GGAA)n Simple_repeat Simple_repeat 4 48 0 258 224 13 79 chr11 32146606 32146682 -118636871 - MIR SINE MIR -109 153 83 880 322 0 4 chr11 32147323 32147559 -118635994 - MIR SINE MIR -23 239 5 207 390 149 4 chr11 32148002 32148230 -118635323 + L3 LINE CR1 1263 1523 -54 255 186 0 0 chr11 32148282 32148325 -118635228 + L2 LINE L2 2602 2644 -670 339 136 0 0 chr11 32148353 32148412 -118635141 + (CA)n Simple_repeat Simple_repeat 1 59 0 255 333 0 0 chr11 32149054 32149123 -118634430 + L2 LINE L2 3202 3270 -2 21 36 0 0 chr11 32149191 32149219 -118634334 + AT_rich Low_complexity Low_complexity 1 28 0 1820 211 66 23 chr11 32150089 32150601 -118632952 + MLT1F LTR MaLR 1 534 -8 488 248 41 8 chr11 32150930 32151051 -118632502 - MIR SINE MIR -37 225 101 787 226 68 9 chr11 32151051 32151272 -118632281 - MLT1K LTR MaLR -120 468 235 407 292 23 41 chr11 32151316 32151487 -118632066 - MLT1K LTR MaLR -419 169 2 376 272 11 0 chr11 32151650 32151742 -118631811 - MER63C DNA MER1_type 0 930 838 555 134 0 12 chr11 32151764 32151846 -118631707 + AluJ/FLAM SINE Alu 21 101 -211 1865 187 112 24 chr11 32151850 32152352 -118631201 - MER63C DNA MER1_type -374 556 11 369 298 32 8 chr11 32152396 32152520 -118631033 - L2 LINE L2 -527 2787 2661 205 341 12 12 chr11 32152588 32152673 -118630880 - MIR SINE MIR -29 233 149 2428 269 61 30 chr11 32155415 32156581 -118626972 + L2 LINE L2 2122 3313 0 304 268 54 83 chr11 32157098 32157266 -118626287 + MER117 DNA MER1_type 1 163 -34 232 383 22 26 chr11 32157463 32157732 -118625821 - L2 LINE L2 -436 2878 2611 371 308 107 13 chr11 32158146 32158380 -118625173 - MER102a DNA MER1_type -1 329 74 459 242 137 20 chr11 32158610 32158763 -118624790 - MIR SINE MIR -3 259 89 446 217 69 3 chr11 32159383 32159572 -118623981 - MIR SINE MIR -4 258 2 395 37 0 19 chr11 32160486 32160540 -118623013 + (TC)n Simple_repeat Simple_repeat 2 54 0 408 247 63 84 chr11 32162040 32162279 -118621274 + MER106A DNA MER1_type 1 234 -2 326 240 0 19 chr11 32162295 32162399 -118621154 - L1ME LINE L1 -344 5801 5700 6240 200 23 24 chr11 32162410 32165378 -118618175 + L1MC1 LINE L1 3366 6329 -4 484 283 119 21 chr11 32165375 32165796 -118617757 - L1ME LINE L1 -443 5702 5241 * 419 263 111 31 chr11 32165848 32166004 -118617549 - L1ME LINE L1 -2912 3217 3075 1639 94 0 5 chr11 32166004 32166227 -118617326 - AluY SINE Alu -9 302 81 419 263 111 31 chr11 32166227 32166905 -118616648 - L1ME LINE L1 -3054 3075 2286 722 243 61 12 chr11 32166911 32167158 -118616395 - LTR33A LTR ERVL -1 522 264 779 139 22 7 chr11 32167326 32167463 -118616090 - L1MC4 LINE L1 -1061 6981 6843 714 89 0 10 chr11 32167593 32167694 -118615859 - AluY SINE Alu -7 304 205 300 248 19 9 chr11 32167698 32167803 -118615750 - L1ME LINE L1 -3872 2257 2152 362 291 46 62 chr11 32167805 32168054 -118615499 - L1MEc LINE L1 -3980 2159 1944 230 230 27 0 chr11 32168118 32168192 -118615361 + CT-rich Low_complexity Low_complexity 1 76 0 716 211 67 5 chr11 32168724 32168918 -118614635 + L1MC4 LINE L1 6853 7058 -984 1845 182 0 0 chr11 32168929 32169258 -118614295 - MER47A DNA MER2_type 0 366 38 1575 229 165 21 chr11 32169292 32169873 -118613680 + L1MC4 LINE L1 7238 7902 -140 21 36 0 0 chr11 32169911 32169939 -118613614 + AT_rich Low_complexity Low_complexity 1 28 0 359 293 34 13 chr11 32170241 32170480 -118613073 - L1MEc LINE L1 -4727 1583 1340 454 209 37 70 chr11 32170505 32170692 -118612861 - L1MEc LINE L1 -4885 1234 1054 655 328 34 32 chr11 32170710 32171146 -118612407 - L1MEc LINE L1 -5260 859 423 2397 154 42 2 chr11 32171319 32171729 -118611824 - MSTB LTR MaLR 0 426 1 9238 172 17 11 chr11 32171729 32173370 -118610183 - MSTB-int LTR MaLR 0 1651 1 2287 145 27 63 chr11 32173370 32173812 -118609741 - MSTB LTR MaLR 0 426 1 2179 141 14 3 chr11 32174370 32174739 -118608814 + MER34B LTR ERV1 1 373 -192 1203 181 37 15 chr11 32174805 32175114 -118608439 + LTR10B LTR ERV1 215 547 0 1022 144 16 5 chr11 32175114 32175308 -118608245 + MER34B LTR ERV1 369 564 -1 255 320 78 19 chr11 32175397 32175500 -118608053 + MIR SINE MIR 19 127 -81 243 292 183 8 chr11 32175884 32176004 -118607549 + MIR SINE MIR 120 260 -2 460 318 167 5 chr11 32177292 32177490 -118606063 - MIR SINE MIR -18 244 15 241 207 52 0 chr11 32177739 32177797 -118605756 + L2 LINE L2 2685 2745 -569 237 305 6 166 chr11 32178146 32178477 -118605076 + L2 LINE L2 2995 3272 0 3879 127 28 16 chr11 32178865 32179510 -118604043 - MER39B LTR ERV1 0 653 1 787 271 62 4 chr11 32180069 32180313 -118603240 - MIR SINE MIR 0 262 5 448 284 13 124 chr11 32180853 32181078 -118602475 - L2 LINE L2 -39 3233 3034 570 164 17 0 chr11 32181270 32181386 -118602167 - MER31A LTR ERV1 0 485 368 910 121 42 77 chr11 32181397 32181603 -118601950 - LTR48 LTR ERV1 0 787 437 1332 199 130 19 chr11 32181603 32182034 -118601519 - LTR48 LTR ERV1 -303 484 6 1218 180 31 96 chr11 32182040 32182298 -118601255 - MER31B LTR ERV1 -107 359 133 2419 70 0 3 chr11 32182298 32182599 -118600954 - AluY SINE Alu -11 300 1 1218 180 31 96 chr11 32182599 32182724 -118600829 - MER31B LTR ERV1 -333 133 1 1017 223 59 13 chr11 32182840 32183169 -118600384 + MSTD LTR MaLR 1 396 0 316 330 10 10 chr11 32184028 32184131 -118599422 - L2 LINE L2 -9 3304 3202 854 152 0 0 chr11 32184354 32184486 -118599067 - FLAM_C SINE Alu -1 132 1 791 274 47 8 chr11 32185222 32185456 -118598097 + MIR SINE MIR 3 245 -17 200 122 0 24 chr11 32185470 32185511 -118598042 + (TTA)n Simple_repeat Simple_repeat 2 41 0 751 323 101 30 chr11 32185543 32186010 -118597543 + L3 LINE CR1 1074 1573 -4 331 277 79 20 chr11 32186127 32186228 -118597325 - MER91A DNA MER1_type -1 195 89 312 309 195 41 chr11 32186228 32186351 -118597202 - MER91A DNA MER1_type -23 173 32 231 97 0 0 chr11 32187020 32187051 -118596502 + LTR67 LTR ERVL 519 549 -8 737 254 108 26 chr11 32187221 32187453 -118596100 - MIR SINE MIR -11 251 1 180 0 0 0 chr11 32189869 32189889 -118593664 + (A)n Simple_repeat Simple_repeat 1 20 0 245 255 0 0 chr11 32190028 32190079 -118593474 + L2 LINE L2 3263 3313 0 386 230 169 27 chr11 32190130 32190278 -118593275 + MIR SINE MIR 65 233 -29 1443 150 16 0 chr11 32190359 32190612 -118592941 + MER34C LTR ERV1 329 585 0 195 337 0 51 chr11 32190662 32190760 -118592793 - MIR SINE MIR -50 212 120 334 270 0 0 chr11 32190817 32190891 -118592662 - L2 LINE L2 -8 3305 3232 2250 109 0 0 chr11 32191833 32192127 -118591426 + AluSx SINE Alu 1 294 -18 219 231 46 15 chr11 32192655 32192720 -118590833 - L2 LINE L2 -74 3239 3173 29 0 0 0 chr11 32192939 32192968 -118590585 + AT_rich Low_complexity Low_complexity 1 29 0 272 265 0 15 chr11 32193347 32193415 -118590138 + (CATATA)n Simple_repeat Simple_repeat 3 69 0 2588 151 15 24 chr11 32193917 32194200 -118589353 + MLT1C LTR MaLR 1 280 -187 2071 170 0 37 chr11 32194200 32194577 -118588976 - MLT1A1 LTR MaLR -2 363 1 2588 151 15 24 chr11 32194577 32194749 -118588804 + MLT1C LTR MaLR 280 452 -15 754 206 138 82 chr11 32194749 32195040 -118588513 + MLT1A1 LTR MaLR 1 307 -58 660 296 25 53 chr11 32195247 32195490 -118588063 + MIR SINE MIR 20 255 -7 194 325 266 7 chr11 32195832 32195986 -118587567 - MIR3 SINE MIR 0 208 15 2455 94 0 0 chr11 32196231 32196539 -118587014 - AluSx SINE Alu -4 308 1 485 353 53 56 chr11 32197434 32198036 -118585517 - L2 LINE L2 -3 3269 2584 219 88 0 0 chr11 32199540 32199574 -118583979 + (TCTA)n Simple_repeat Simple_repeat 2 35 0 411 211 0 0 chr11 32199856 32199946 -118583607 + (TA)n Simple_repeat Simple_repeat 2 91 0 1217 177 28 11 chr11 32200275 32200557 -118582996 + MER33 DNA MER1_type 35 321 -3 332 297 57 92 chr11 32200557 32200961 -118582592 + L2 LINE L2 2877 3266 -47 229 154 0 31 chr11 32200979 32201044 -118582509 + (TA)n Simple_repeat Simple_repeat 2 64 0 417 66 0 0 chr11 32201052 32201113 -118582440 + (TC)n Simple_repeat Simple_repeat 2 62 0 294 183 0 0 chr11 32201282 32201353 -118582200 + (TA)n Simple_repeat Simple_repeat 1 71 0 207 0 0 0 chr11 32201353 32201376 -118582177 + (GA)n Simple_repeat Simple_repeat 2 24 0 399 250 73 44 chr11 32202228 32202364 -118581189 + MER5A DNA MER1_type 47 186 -3 1937 161 0 3 chr11 32206160 32206452 -118577101 + AluJb SINE Alu 2 292 -20 185 269 269 8 chr11 32209669 32209788 -118573765 + MIR3 SINE MIR 58 207 -1 682 75 0 0 chr11 32210437 32210530 -118573023 - L1PA6 LINE L1 -6 6148 6056 238 350 98 21 chr11 32210990 32211184 -118572369 - MIR SINE MIR 0 262 54 312 333 10 43 chr11 32211581 32211788 -118571765 + HAL1b LINE L1 391 590 -758 1943 160 10 10 chr11 32212012 32212319 -118571234 - AluJb SINE Alu -5 307 1 311 312 46 93 chr11 32212338 32212996 -118570557 + L1ME4a LINE L1 4080 4706 -1440 23 33 0 0 chr11 32213018 32213048 -118570505 + AT_rich Low_complexity Low_complexity 1 30 0 1014 264 105 19 chr11 32213697 32214239 -118569314 + L1ME4a LINE L1 5507 6095 -26 1456 212 73 28 chr11 32214382 32214736 -118568817 - MLT1A2 LTR MaLR -4 370 1 23 0 0 0 chr11 32214950 32214973 -118568580 + AT_rich Low_complexity Low_complexity 1 23 0 1838 146 25 0 chr11 32215716 32215990 -118567563 + AluSq SINE Alu 1 281 -32 1182 57 23 11 chr11 32215991 32216166 -118567387 + (GAAA)n Simple_repeat Simple_repeat 2 178 0 2284 79 4 0 chr11 32216424 32216703 -118566850 + AluSp SINE Alu 1 280 -33 188 83 0 28 chr11 32216705 32216741 -118566812 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 1550 178 40 74 chr11 32217825 32218229 -118565324 + MLT1B LTR MaLR 1 390 0 286 230 230 18 chr11 32219011 32219124 -118564429 - L1ME LINE L1 -525 5596 5460 408 123 0 0 chr11 32220415 32220472 -118563081 + Alu SINE Alu 237 293 -19 505 251 97 40 chr11 32220600 32220775 -118562778 - MIR SINE MIR -32 230 46 271 313 73 104 chr11 32223158 32223417 -118560136 - L2 LINE L2 -5 3267 3017 243 307 89 0 chr11 32224723 32224824 -118558729 - MIR SINE MIR -7 255 146 302 184 0 0 chr11 32224870 32224919 -118558634 + L2 LINE L2 3213 3261 -11 2387 67 20 3 chr11 32225295 32225594 -118557959 + AluY SINE Alu 1 304 -7 798 338 76 47 chr11 32225802 32226646 -118556907 - L2 LINE L2 -114 3158 2295 201 108 0 0 chr11 32227103 32227140 -118556413 + (A)n Simple_repeat Simple_repeat 1 37 0 539 289 118 48 chr11 32229234 32229462 -118554091 - MIR SINE MIR -6 256 13 348 260 24 16 chr11 32230032 32230087 -118553466 + (TA)n Simple_repeat Simple_repeat 2 55 -74 1342 220 30 48 chr11 32230087 32230459 -118553094 + MLT1A1 LTR MaLR 1 365 0 348 260 24 16 chr11 32230459 32230530 -118553023 + (TA)n Simple_repeat Simple_repeat 55 129 0 659 288 0 7 chr11 32230615 32230761 -118552792 - MIR SINE MIR -114 148 4 214 358 25 0 chr11 32230851 32230932 -118552621 - L2 LINE L2 -83 3189 3107 234 270 111 32 chr11 32232038 32232164 -118551389 - MIR SINE MIR -50 212 77 21 0 0 0 chr11 32232235 32232256 -118551297 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr11 32233154 32233175 -118550378 + AT_rich Low_complexity Low_complexity 1 21 0 216 274 32 53 chr11 32233282 32233377 -118550176 + MIR SINE MIR 5 97 -165 581 199 40 189 chr11 32234954 32235308 -118548245 + L1MC4a LINE L1 6734 6994 -967 1014 219 64 101 chr11 32235308 32235874 -118547679 + MLT1H LTR MaLR 1 545 -4 581 199 40 189 chr11 32235874 32236038 -118547515 + L1MC4a LINE L1 6994 7181 -780 302 323 55 18 chr11 32236188 32236352 -118547201 + L1MC5 LINE L1 7276 7445 -516 362 224 68 59 chr11 32236384 32236603 -118546950 + L1MC5 LINE L1 7548 7768 -193 353 251 71 33 chr11 32237196 32237379 -118546174 - L1ME4a LINE L1 -84 6037 5848 406 312 90 17 chr11 32237485 32237786 -118545767 - L1ME4a LINE L1 -430 5691 5369 270 341 14 58 chr11 32238993 32239131 -118544422 + L2 LINE L2 3136 3267 -5 670 205 99 29 chr11 32239467 32239638 -118543915 + LTR41 LTR ERVL 1 183 -590 2199 128 59 47 chr11 32239892 32240268 -118543285 + MSTC LTR MaLR 1 384 -44 2125 122 13 10 chr11 32240268 32240571 -118542982 - AluSx SINE Alu -8 304 1 2199 128 59 47 chr11 32240571 32240617 -118542936 + MSTC LTR MaLR 384 428 0 2255 49 59 3 chr11 32241128 32241416 -118542137 + AluY SINE Alu 1 304 -7 357 212 150 44 chr11 32241989 32242102 -118541451 + L2 LINE L2 3189 3313 0 189 0 0 0 chr11 32242621 32242642 -118540911 + (A)n Simple_repeat Simple_repeat 1 21 0 384 260 45 48 chr11 32242751 32243020 -118540533 - L1MC5 LINE L1 -179 7782 7515 228 343 0 0 chr11 32244272 32244339 -118539214 - L2 LINE L2 0 3272 3206 893 316 61 25 chr11 32246368 32246763 -118536790 - L2 LINE L2 -79 3234 2826 344 286 244 35 chr11 32247099 32247410 -118536143 + L3 LINE CR1 1167 1542 -35 21 0 0 0 chr11 32249065 32249086 -118534467 + AT_rich Low_complexity Low_complexity 1 21 0 472 204 107 92 chr11 32250650 32250846 -118532707 + L1MD2 LINE L1 5684 5882 -477 22 56 0 0 chr11 32250894 32250930 -118532623 + AT_rich Low_complexity Low_complexity 1 36 0 459 216 0 0 chr11 32250942 32251058 -118532495 + GA-rich Low_complexity Low_complexity 3 118 0 962 247 23 5 chr11 32251082 32251301 -118532252 + MER58A DNA MER1_type 2 224 0 304 247 14 82 chr11 32251324 32251470 -118532083 + L1ME4a LINE L1 5986 6121 0 33 0 0 0 chr11 32251589 32251622 -118531931 + AT_rich Low_complexity Low_complexity 1 33 0 1869 139 11 4 chr11 32251622 32251903 -118531650 - AluSx SINE Alu -27 285 3 214 291 10 97 chr11 32252746 32252779 -118530774 + MIR SINE MIR 167 201 -61 1972 145 3 3 chr11 32252779 32253076 -118530477 + AluSx SINE Alu 1 297 -15 214 291 10 97 chr11 32253076 32253145 -118530408 + MIR SINE MIR 201 260 -2 278 222 256 40 chr11 32253514 32253690 -118529863 + MIR SINE MIR 15 228 -34 209 379 0 0 chr11 32254161 32254227 -118529326 - L2 LINE L2 -220 3052 2987 716 200 0 8 chr11 32254803 32254928 -118528625 + FLAM_C SINE Alu 1 124 -9 303 175 0 0 chr11 32255360 32255417 -118528136 + A-rich Low_complexity Low_complexity 1 57 0 375 353 14 7 chr11 32255486 32255625 -118527928 - MIR3 SINE MIR -68 140 1 2410 155 36 7 chr11 32255973 32256393 -118527160 + MSTB1 LTR MaLR 1 432 0 239 234 75 43 chr11 32258191 32258285 -118525268 - MER91C DNA MER1_type -22 118 22 208 208 0 21 chr11 32260038 32260086 -118523467 - L2 LINE L2 -2 3311 3265 222 343 49 20 chr11 32260479 32260581 -118522972 - L2 LINE L2 0 3313 3209 201 355 13 32 chr11 32260788 32260943 -118522610 - L2 LINE L2 -802 2512 2361 616 280 79 16 chr11 32261303 32261681 -118521872 - L1M4 LINE L1 -2134 4012 3611 1657 316 43 50 chr11 32261760 32262913 -118520640 - HERVI LTR ERV1 -216 6433 5289 2243 106 3 10 chr11 32263529 32263840 -118519713 - AluSg SINE Alu -1 309 1 1134 331 10 8 chr11 32263946 32264438 -118519115 - HERVI LTR ERV1 -2029 5756 5264 2029 109 26 10 chr11 32264489 32264802 -118518751 + LTR19C LTR ERV1 98 415 -364 602 296 80 46 chr11 32265072 32265730 -118517823 - HERVI LTR ERV1 -4558 2091 1624 323 315 0 37 chr11 32266084 32266246 -118517307 + CT-rich Low_complexity Low_complexity 2 157 0 520 62 0 25 chr11 32266262 32266342 -118517211 - LTR18B LTR ERVL -269 345 268 455 133 0 13 chr11 32266388 32266463 -118517090 - LTR18B LTR ERVL -209 405 332 565 343 8 4 chr11 32266530 32266769 -118516784 - HERVI LTR ERV1 -6768 1017 778 755 275 97 34 chr11 32267843 32268104 -118515449 - L1M4 LINE L1 -2587 3559 3316 3310 121 6 22 chr11 32268104 32268609 -118514944 + LOR1a LTR ERV1 1 497 0 755 275 97 34 chr11 32268609 32269056 -118514497 - L1M4 LINE L1 -2830 3316 2806 1228 284 95 5 chr11 32269101 32269573 -118513980 + L2 LINE L2 2534 3070 -243 215 359 76 0 chr11 32272270 32272362 -118511191 + L2 LINE L2 3197 3295 -18 2433 91 0 0 chr11 32272948 32273255 -118510298 - AluSg SINE Alu -3 307 1 2036 136 3 0 chr11 32273400 32273686 -118509867 + AluSq SINE Alu 1 287 -26 603 40 0 0 chr11 32273686 32273760 -118509793 + (TCTA)n Simple_repeat Simple_repeat 4 77 0 418 249 24 30 chr11 32275104 32275273 -118508280 + L1MEd LINE L1 1387 1554 -4976 * 2840 189 23 14 chr11 32275268 32275914 -118507639 + L1MA4 LINE L1 4698 5349 -797 * 8853 73 1 3 chr11 32275887 32278001 -118505552 + L1PA7 LINE L1 4041 6150 -4 5544 138 12 38 chr11 32277994 32278996 -118504557 + L1MA4 LINE L1 5316 6291 -9 * 22 0 0 0 chr11 32278996 32279018 -118504535 + AT_rich Low_complexity Low_complexity 1 22 0 582 256 103 34 chr11 32279020 32279486 -118504067 + L1MEd LINE L1 1544 2102 -4549 385 336 78 37 chr11 32279717 32279988 -118503565 + L1MEd LINE L1 2403 2684 -4037 742 250 105 16 chr11 32279995 32280299 -118503254 + L1MEd LINE L1 2643 2973 -3567 23 0 0 0 chr11 32280728 32280751 -118502802 + AT_rich Low_complexity Low_complexity 1 23 0 216 58 47 70 chr11 32281221 32281307 -118502246 + (TTATA)n Simple_repeat Simple_repeat 5 88 0 27 0 0 0 chr11 32281523 32281550 -118502003 + AT_rich Low_complexity Low_complexity 1 27 0 835 179 12 18 chr11 32281654 32281822 -118501731 + L1M4 LINE L1 5576 5742 -432 2546 48 0 13 chr11 32281991 32282303 -118501250 - AluY SINE Alu -3 308 1 1561 313 63 36 chr11 32283101 32283952 -118499601 + L2 LINE L2 360 1233 -2081 607 278 113 10 chr11 32283961 32284155 -118499398 + MER20B DNA MER1_type 15 228 -555 752 165 0 16 chr11 32284197 32284324 -118499229 - FLAM_C SINE Alu -18 125 1 1244 235 81 24 chr11 32284333 32284789 -118498764 + MER20B DNA MER1_type 301 782 -1 1654 278 122 11 chr11 32284791 32285495 -118498058 + L2 LINE L2 1215 1996 -1318 578 300 51 51 chr11 32285495 32285848 -118497705 + MERVL LTR ERVL 3141 3493 -1992 1122 329 37 12 chr11 32285857 32286343 -118497210 + MERVL LTR ERVL 3595 4092 -1672 682 343 70 11 chr11 32286355 32286813 -118496740 + MERVL LTR ERVL 4432 4916 -569 22 0 0 0 chr11 32288812 32288834 -118494719 + AT_rich Low_complexity Low_complexity 1 22 0 27 62 0 0 chr11 32290072 32290120 -118493433 + AT_rich Low_complexity Low_complexity 1 48 0 824 291 107 13 chr11 32291363 32291672 -118491881 + MLT1J LTR MaLR 4 341 -170 8785 16 0 0 chr11 32293593 32295380 -118488173 - L1HS LINE L1 -4 6151 4365 1200 21 0 0 chr11 32295373 32295517 -118488036 + L1HS LINE L1 4218 4361 -1785 * 223 323 46 0 chr11 32296269 32296334 -118487219 + L2 LINE L2 3246 3313 0 1089 185 24 58 chr11 32296350 32296642 -118486911 + MER44D DNA MER2_type 1 552 -57 197 68 40 54 chr11 32296642 32296716 -118486837 + (TA)n Simple_repeat Simple_repeat 2 74 0 384 164 0 0 chr11 32296716 32296777 -118486776 + MER44D DNA MER2_type 519 579 -26 1602 215 98 44 chr11 32297103 32297582 -118485971 + MLT1D LTR MaLR 1 505 0 7341 173 61 52 chr11 32297882 32299588 -118483965 + L1MA4A LINE L1 13 2049 -4799 2531 74 0 0 chr11 32299588 32299897 -118483656 - AluY SINE Alu -2 309 1 7341 173 61 52 chr11 32299897 32300788 -118482765 + L1MA4A LINE L1 2049 2931 -3917 2184 143 35 22 chr11 32300788 32300978 -118482575 + MSTA LTR MaLR 1 187 -241 2041 139 0 7 chr11 32300978 32301279 -118482274 + AluSx SINE Alu 1 299 -13 2184 143 35 22 chr11 32301279 32301458 -118482095 + MSTA LTR MaLR 187 375 -53 14295 162 33 10 chr11 32301485 32305461 -118478092 + L1MA4A LINE L1 2930 6999 -6 354 258 31 127 chr11 32305476 32305636 -118477917 - L1ME LINE L1 -338 5783 5656 1717 165 7 7 chr11 32305636 32305927 -118477626 + AluJb SINE Alu 1 291 -21 354 258 31 127 chr11 32305927 32306026 -118477527 - L1ME LINE L1 -465 5656 5549 393 393 0 0 chr11 32306300 32306417 -118477136 + L2 LINE L2 3137 3253 -19 2493 119 17 5 chr11 32306472 32306768 -118476785 - L1MA4A LINE L1 -5 6298 5994 432 0 0 0 chr11 32306768 32306816 -118476737 + (CA)n Simple_repeat Simple_repeat 2 49 0 2493 119 17 5 chr11 32306816 32306932 -118476621 - L1MA4A LINE L1 -309 5994 5881 1005 133 75 0 chr11 32307104 32307277 -118476276 + L1M2 LINE L1 2 187 -6662 379 284 63 47 chr11 32308080 32308207 -118475346 + L2 LINE L2 3137 3265 -7 334 303 123 52 chr11 32308249 32308404 -118475149 + MER115 DNA AcHobo 67 232 -461 3193 152 44 5 chr11 32308760 32309332 -118474221 + L1PB4 LINE L1 5559 6152 -4 336 305 11 0 chr11 32309335 32309430 -118474123 + MIR SINE MIR 147 242 -20 29 0 0 0 chr11 32309991 32310020 -118473533 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr11 32311622 32311643 -118471910 + AT_rich Low_complexity Low_complexity 1 21 0 436 259 0 22 chr11 32313455 32313594 -118469959 - L1ME2 LINE L1 0 6164 6029 774 296 21 39 chr11 32313953 32314233 -118469320 - MLT1J LTR MaLR -6 505 231 2352 104 0 0 chr11 32314311 32314619 -118468934 - AluSc SINE Alu -1 308 1 2068 129 0 0 chr11 32314986 32315303 -118468250 - AluSx SINE Alu 0 319 3 900 322 96 50 chr11 32315351 32315685 -118467868 - L2 LINE L2 -7 3306 2989 1509 128 18 0 chr11 32315685 32315911 -118467642 - MER30 DNA MER1_type 0 230 1 900 322 96 50 chr11 32315911 32316484 -118467069 - L2 LINE L2 -324 2989 2344 242 288 6 110 chr11 32316480 32316599 -118466954 + L2 LINE L2 2824 2923 -391 * 1536 128 18 0 chr11 32316599 32316825 -118466728 + MER30 DNA MER1_type 1 230 0 242 288 6 110 chr11 32316825 32316868 -118466685 + L2 LINE L2 2923 2969 -345 743 316 130 5 chr11 32316896 32317266 -118466287 - L2 LINE L2 -977 2337 1922 240 167 0 0 chr11 32319268 32319316 -118464237 + L1MA9 LINE L1 6227 6274 -38 239 277 96 32 chr11 32319941 32320035 -118463518 - L2 LINE L2 -4 3268 3169 23 33 0 0 chr11 32321017 32321047 -118462506 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr11 32321067 32321089 -118462464 + AT_rich Low_complexity Low_complexity 1 22 0 256 194 60 0 chr11 32321155 32321222 -118462331 + L1MD3 LINE L1 2869 2939 -3207 3099 248 38 13 chr11 32321260 32322293 -118461260 + L1MD3 LINE L1 2933 3991 -2155 1275 167 50 0 chr11 32322297 32322518 -118461035 - AluSx SINE Alu -18 294 63 219 69 0 0 chr11 32322518 32322547 -118461006 + (TA)n Simple_repeat Simple_repeat 2 30 0 216 93 113 7 chr11 32322598 32322749 -118460804 + (TA)n Simple_repeat Simple_repeat 2 168 0 33 0 0 0 chr11 32322752 32322785 -118460768 + AT_rich Low_complexity Low_complexity 1 33 0 6388 212 108 85 chr11 32322791 32324397 -118459156 + L1MD3 LINE L1 4018 5586 -2409 1168 197 12 113 chr11 32324397 32324803 -118458750 + MLT1A1 LTR MaLR 1 365 0 6388 212 108 85 chr11 32324803 32325319 -118458234 + L1MD3 LINE L1 5586 6089 -1906 183 80 0 0 chr11 32325319 32325344 -118458209 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 6388 212 108 85 chr11 32325344 32325793 -118457760 + L1MD3 LINE L1 6089 6526 -1469 249 33 0 0 chr11 32325793 32325823 -118457730 + (TG)n Simple_repeat Simple_repeat 2 31 0 6388 212 108 85 chr11 32325823 32326003 -118457550 + L1MD3 LINE L1 6526 6700 -1295 1799 171 10 3 chr11 32326003 32326295 -118457258 + AluJo SINE Alu 4 297 -15 6388 212 108 85 chr11 32326295 32326713 -118456840 + L1MD3 LINE L1 6700 7107 -888 550 213 82 8 chr11 32326713 32326835 -118456718 + MLT1F1 LTR MaLR 1 131 -436 6388 212 108 85 chr11 32326835 32327420 -118456133 + L1MD3 LINE L1 7107 7982 -13 249 388 61 7 chr11 32327557 32327704 -118455849 + MIR3 SINE MIR 29 183 -25 396 127 38 13 chr11 32328808 32328887 -118454666 - L1MC4 LINE L1 -2 8040 7960 1293 190 25 44 chr11 32328922 32329238 -118454315 - L1MC4 LINE L1 -749 7293 6984 265 226 24 0 chr11 32331062 32331146 -118452407 + (TA)n Simple_repeat Simple_repeat 2 87 0 289 275 62 81 chr11 32331481 32331641 -118451912 - L2 LINE L2 -189 3083 2927 233 324 130 5 chr11 32331886 32332102 -118451451 - L2 LINE L2 -788 2526 2284 662 280 43 26 chr11 32332378 32332397 -118451156 + MIR SINE MIR 8 25 -237 2230 61 3 34 chr11 32332397 32332693 -118450860 + AluY SINE Alu 18 304 -7 662 280 43 26 chr11 32332693 32332923 -118450630 + MIR SINE MIR 25 262 0 234 0 0 0 chr11 32333941 32333967 -118449586 + (A)n Simple_repeat Simple_repeat 1 26 0 336 331 91 31 chr11 32334058 32334475 -118449078 + L2 LINE L2 1863 2304 -1010 810 256 40 18 chr11 32334482 32334705 -118448848 + MIR SINE MIR 29 256 -6 186 298 95 12 chr11 32335030 32335114 -118448439 + MIR3 SINE MIR 115 205 -3 222 309 81 40 chr11 32335498 32335647 -118447906 - L2 LINE L2 -2512 802 648 2225 107 3 0 chr11 32335651 32335951 -118447602 - AluSx SINE Alu -11 301 1 251 352 104 39 chr11 32335980 32336366 -118447187 - L2 LINE L2 -2807 507 97 21 36 0 0 chr11 32336826 32336854 -118446699 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr11 32337205 32337229 -118446324 + AT_rich Low_complexity Low_complexity 1 24 0 510 141 0 24 chr11 32337340 32337425 -118446128 - MLT1E LTR MaLR 0 654 572 315 0 0 0 chr11 32337427 32337462 -118446091 + (TG)n Simple_repeat Simple_repeat 2 36 0 1392 177 244 40 chr11 32337465 32337724 -118445829 - MLT2B1 LTR ERVL -71 449 244 2043 119 71 20 chr11 32337724 32338078 -118445475 - THE1C LTR MaLR -3 372 1 1392 177 244 40 chr11 32338078 32338191 -118445362 - MLT2B1 LTR ERVL -276 244 1 1513 257 86 38 chr11 32338196 32338674 -118444879 - MLT1E LTR MaLR -92 501 1 250 219 153 36 chr11 32338978 32339115 -118444438 + L1ME3A LINE L1 4796 4948 -1198 466 237 136 21 chr11 32339325 32339605 -118443948 + L1ME3A LINE L1 5189 5491 -679 343 331 57 6 chr11 32339622 32339779 -118443774 + L1ME3A LINE L1 5555 5719 -451 2378 117 117 5 chr11 32339861 32340246 -118443307 + MSTA LTR MaLR 1 428 0 1784 179 3 25 chr11 32340304 32340623 -118442930 + AluJb SINE Alu 1 312 0 374 262 68 29 chr11 32340633 32340839 -118442714 + L1ME3A LINE L1 5743 5956 -214 237 245 47 75 chr11 32341337 32341443 -118442110 + L2 LINE L2 3195 3297 -16 425 212 0 0 chr11 32341928 32342013 -118441540 + MLT1F LTR MaLR 1 85 -457 * 598 194 146 6 chr11 32342003 32342168 -118441385 + MLT1F1 LTR MaLR 6 193 -197 273 221 0 0 chr11 32342175 32342243 -118441310 + CT-rich Low_complexity Low_complexity 2 69 0 1362 205 95 15 chr11 32342252 32342589 -118440964 + MLT1F1 LTR MaLR 189 552 -15 2220 73 3 7 chr11 32342934 32343236 -118440317 - AluY SINE Alu -10 301 1 554 277 134 0 chr11 32344030 32344233 -118439320 + MIR SINE MIR 23 259 -3 185 239 11 114 chr11 32344597 32344685 -118438868 - L2 LINE L2 -289 2983 2905 701 186 34 45 chr11 32344689 32344866 -118438687 - MER5B DNA MER1_type -3 175 1 259 199 38 53 chr11 32345033 32345164 -118438389 - Charlie7 DNA MER1_type -70 2542 2414 1598 163 7 33 chr11 32345165 32345466 -118438087 + Tigger2a DNA MER2_type 2 294 -140 26 0 0 0 chr11 32345474 32345500 -118438053 + AT_rich Low_complexity Low_complexity 1 26 0 1644 157 7 43 chr11 32345576 32345881 -118437672 - AluJb SINE Alu -18 294 1 1073 248 41 52 chr11 32345881 32346340 -118437213 - Charlie7 DNA MER1_type -239 2373 1920 196 239 155 63 chr11 32346423 32346565 -118436988 - MIR SINE MIR -10 252 98 377 310 92 35 chr11 32347011 32347240 -118436313 + MIR SINE MIR 13 254 -8 599 314 137 26 chr11 32347599 32348170 -118435383 + L2 LINE L2 2679 3312 -1 33 0 0 0 chr11 32348573 32348606 -118434947 + AT_rich Low_complexity Low_complexity 1 33 0 661 153 9 0 chr11 32348608 32348719 -118434834 - FLAM_C SINE Alu -25 118 7 258 253 71 0 chr11 32348873 32348972 -118434581 + L1MC4a LINE L1 5260 5365 -2443 1296 294 74 28 chr11 32349003 32349716 -118433837 + L1MC4a LINE L1 5427 6172 -1636 1579 225 48 29 chr11 32350100 32350517 -118433036 - MLT1C LTR MaLR -41 464 3 407 19 19 0 chr11 32350632 32350684 -118432869 + (TG)n Simple_repeat Simple_repeat 2 54 0 21 0 0 0 chr11 32351581 32351602 -118431951 + AT_rich Low_complexity Low_complexity 1 21 0 248 299 126 35 chr11 32351965 32352139 -118431414 + L1MC/D LINE L1 5579 5768 -2040 243 343 14 0 chr11 32352292 32352365 -118431188 - L2 LINE L2 0 3272 3199 684 283 78 22 chr11 32352518 32352928 -118430625 - L1ME4a LINE L1 0 6121 5689 215 213 51 47 chr11 32353748 32353835 -118429718 - MIR SINE MIR -63 199 45 22 0 0 0 chr11 32357516 32357538 -118426015 + AT_rich Low_complexity Low_complexity 1 22 0 250 129 43 43 chr11 32361255 32361325 -118422228 - L1MC4 LINE L1 -1337 6705 6636 617 200 12 19 chr11 32361386 32361546 -118422007 - L1MD3 LINE L1 -842 7153 6995 489 221 10 19 chr11 32361650 32361754 -118421799 + Tigger3(Golem) DNA MER2_type 2 104 -2925 * 4167 128 54 10 chr11 32361749 32361847 -118421706 + Tigger3(Golem) DNA MER2_type 2277 2369 -659 2167 109 3 13 chr11 32361847 32362149 -118421404 + AluSx SINE Alu 1 299 -13 4167 128 54 10 chr11 32362149 32362770 -118420783 + Tigger3(Golem) DNA MER2_type 2369 3028 0 3717 215 70 15 chr11 32363112 32364065 -118419488 - L1MC4a LINE L1 0 7808 6803 227 335 58 40 chr11 32364216 32364389 -118419164 - L3b LINE CR1 -235 1348 1173 376 176 149 0 chr11 32364604 32364678 -118418875 + MER2 DNA MER2_type 1 85 -260 671 293 86 9 chr11 32364837 32365069 -118418484 - MIR SINE MIR -11 251 2 2081 53 24 95 chr11 32365413 32365751 -118417802 - AluYb8 SINE Alu -4 314 1 793 61 2 0 chr11 32365922 32366028 -118417525 - L1PA5 LINE L1 -208 5946 5852 1384 44 39 0 chr11 32366028 32366206 -118417347 + L1PA5 LINE L1 5956 6142 -12 25 65 0 0 chr11 32367075 32367121 -118416432 + AT_rich Low_complexity Low_complexity 1 46 0 365 294 88 25 chr11 32367353 32367513 -118416040 + MIR SINE MIR 3 172 -90 265 264 0 0 chr11 32367791 32367844 -118415709 + MIR SINE MIR 205 257 -5 408 236 201 0 chr11 32368303 32368447 -118415106 - MER5A DNA MER1_type 0 189 17 304 227 92 126 chr11 32369067 32369305 -118414248 - L2 LINE L2 0 3313 3084 727 265 85 18 chr11 32369401 32369624 -118413929 - MIR SINE MIR -23 239 2 276 263 286 6 chr11 32369624 32369788 -118413765 - MIR SINE MIR -37 225 13 234 273 0 18 chr11 32370179 32370234 -118413319 + MIR SINE MIR 74 127 -81 399 337 25 6 chr11 32370701 32370864 -118412689 + MLT1K LTR MaLR 1 166 -422 1617 162 114 3 chr11 32370915 32371223 -118412330 - MER7A DNA MER2_type 0 346 7 207 148 0 37 chr11 32371770 32371824 -118411729 + (TTTTG)n Simple_repeat Simple_repeat 4 55 0 1953 227 54 62 chr11 32371949 32372184 -118411369 + MLT1E2 LTR MaLR 1 236 -390 2425 66 0 3 chr11 32372184 32372487 -118411066 + AluY SINE Alu 1 302 -9 1953 227 54 62 chr11 32372487 32372882 -118410671 + MLT1E2 LTR MaLR 236 626 0 195 129 0 0 chr11 32373365 32373396 -118410157 + (T)n Simple_repeat Simple_repeat 1 31 0 1865 210 147 12 chr11 32373808 32374304 -118409249 - L1MD2 LINE L1 0 6359 5797 433 319 147 5 chr11 32375969 32376160 -118407393 - MIR SINE MIR -12 250 33 2234 81 0 14 chr11 32376560 32376855 -118406698 + AluY SINE Alu 1 291 -20 220 360 0 12 chr11 32377354 32377440 -118406113 + L2 LINE L2 3229 3313 0 15054 194 33 11 chr11 32377485 32383992 -118399561 + L1PB1 LINE L1 6 6861 -6 1352 248 77 97 chr11 32384071 32384938 -118398615 + L1MEc LINE L1 1973 2761 -3454 1883 156 3 10 chr11 32384938 32385239 -118398314 + AluSx SINE Alu 1 299 -13 1352 248 77 97 chr11 32385239 32385582 -118397971 + L1MEc LINE L1 2761 3110 -3105 374 243 9 93 chr11 32385971 32386078 -118397475 + L2 LINE L2 3160 3257 -15 745 278 122 17 chr11 32386295 32386785 -118396768 - L2 LINE L2 -1 3312 2621 31 0 0 0 chr11 32390639 32390670 -118392883 + AT_rich Low_complexity Low_complexity 1 31 0 1857 63 0 0 chr11 32390787 32391024 -118392529 - L1PA3 LINE L1 -3 6152 5916 3978 34 0 0 chr11 32391024 32391499 -118392054 + L1P2 LINE L1 5327 5801 -354 768 173 0 0 chr11 32391585 32391712 -118391841 + FLAM_C SINE Alu 1 127 -16 21 36 0 0 chr11 32391712 32391740 -118391813 + AT_rich Low_complexity Low_complexity 1 28 0 189 292 14 14 chr11 32393416 32393488 -118390065 - MIR SINE MIR 0 262 191 508 223 19 11 chr11 32394272 32394391 -118389162 - MIR SINE MIR -63 145 71 2131 142 51 3 chr11 32394654 32395028 -118388525 + L1MC1 LINE L1 5936 6327 -6 2584 211 76 9 chr11 32395047 32396028 -118387525 + L1MB8 LINE L1 5102 6172 -6 706 116 0 39 chr11 32396206 32396335 -118387218 - L1MA4 LINE L1 0 6300 6177 2446 68 0 0 chr11 32396844 32397139 -118386414 - AluY SINE Alu -16 295 1 342 189 105 53 chr11 32398511 32398606 -118384947 + MIR SINE MIR 6 105 -157 767 294 141 16 chr11 32398966 32399469 -118384084 - L1ME4a LINE L1 0 6121 5556 335 203 14 0 chr11 32399469 32399543 -118384010 + MLT1F LTR MaLR 8 82 -460 1045 257 176 36 chr11 32399671 32400064 -118383489 + MLT1F LTR MaLR 95 542 0 430 308 63 32 chr11 32400068 32400491 -118383062 - L1ME4a LINE L1 -593 5528 5089 473 267 0 0 chr11 32400836 32400937 -118382616 - MIR SINE MIR -105 157 57 654 244 195 26 chr11 32401975 32402282 -118381271 - LTR41 LTR ERVL -6 767 409 1578 186 32 70 chr11 32402315 32402687 -118380866 + MLT1A1 LTR MaLR 1 358 -7 982 223 15 0 chr11 32402687 32402889 -118380664 + MLT1A1-int LTR MaLR 2 206 -1529 4848 151 38 13 chr11 32402900 32403776 -118379777 - L1PB4 LINE L1 -5 6151 5254 301 188 0 0 chr11 32403787 32403835 -118379718 - Alu SINE Alu -253 48 1 2250 85 3 26 chr11 32403841 32404147 -118379406 - AluSp SINE Alu -14 299 1 991 169 18 37 chr11 32404150 32404324 -118379229 - L1M2 LINE L1 -4774 2075 1899 198 0 0 0 chr11 32404324 32404346 -118379207 + (TTTAA)n Simple_repeat Simple_repeat 3 24 0 1718 180 18 0 chr11 32404349 32404632 -118378921 - AluJo SINE Alu -24 288 1 991 169 18 37 chr11 32404632 32404726 -118378827 - L1M2 LINE L1 -4952 1897 1808 * 1022 285 64 18 chr11 32404716 32405106 -118378447 - L1PA15-16 LINE L1 -6436 413 6 547 194 37 0 chr11 32405100 32405208 -118378345 + MLT1A1-int LTR MaLR 187 298 -1437 * 315 238 0 0 chr11 32405216 32405279 -118378274 + MER58A DNA MER1_type 46 108 0 587 257 56 64 chr11 32405313 32405562 -118377991 - L1ME LINE L1 -359 5811 5565 186 349 23 68 chr11 32406738 32406870 -118376683 - MER5A DNA MER1_type -43 146 21 2969 237 79 18 chr11 32406984 32407717 -118375836 + MER21B LTR ERV1 26 803 -60 437 325 19 13 chr11 32408201 32408358 -118375195 - MIR3 SINE MIR -13 195 38 241 269 221 19 chr11 32409049 32409153 -118374400 + L2 LINE L2 3147 3271 -1 2118 92 7 7 chr11 32409316 32409628 -118373925 + AluSq SINE Alu 1 312 0 331 311 43 38 chr11 32410179 32410301 -118373252 + MIR SINE MIR 27 148 -78 199 220 0 60 chr11 32410389 32410439 -118373114 - MIR3 SINE MIR -42 166 120 307 221 21 14 chr11 32410556 32410701 -118372852 + (TA)n Simple_repeat Simple_repeat 2 147 0 692 242 63 102 chr11 32411481 32411766 -118371787 - Charlie8 DNA MER1_type -2142 275 2 21 36 0 0 chr11 32412335 32412363 -118371190 + AT_rich Low_complexity Low_complexity 1 28 0 2450 214 65 63 chr11 32413159 32413687 -118369866 - L1ME1 LINE L1 0 6403 5878 261 0 0 0 chr11 32413687 32413716 -118369837 + (ATTG)n Simple_repeat Simple_repeat 4 32 0 1580 148 0 82 chr11 32413717 32414021 -118369532 - AluJb SINE Alu -33 279 1 2450 214 65 63 chr11 32414021 32414706 -118368847 - L1ME1 LINE L1 -524 5879 5052 4857 251 67 23 chr11 32414710 32416713 -118366840 - L1ME1 LINE L1 -2313 3902 1754 1449 186 73 11 chr11 32416713 32416988 -118366565 - AluJb SINE Alu -20 292 1 4857 251 67 23 chr11 32416988 32417935 -118365618 - L1ME1 LINE L1 -4461 1754 850 795 252 35 31 chr11 32418309 32418535 -118365018 + MIR SINE MIR 1 227 -35 499 312 35 6 chr11 32420399 32420569 -118362984 - MIR SINE MIR -6 256 82 430 272 61 14 chr11 32420689 32420836 -118362717 - MIR3 SINE MIR -2 206 53 278 229 160 53 chr11 32420941 32421072 -118362481 + MIR SINE MIR 118 262 0 224 239 0 56 chr11 32422314 32422385 -118361168 - L2 LINE L2 -1 3312 3246 5532 38 12 1 chr11 32422783 32423461 -118360092 - L1PA7 LINE L1 -1 6153 5469 210 71 0 0 chr11 32424892 32424920 -118358633 + (TG)n Simple_repeat Simple_repeat 1 28 0 340 339 73 12 chr11 32427310 32427475 -118356078 + L2 LINE L2 2686 2860 -454 2341 95 0 0 chr11 32427699 32428005 -118355548 - AluSc SINE Alu -3 306 1 272 329 86 21 chr11 32428269 32428409 -118355144 - L2 LINE L2 -4 3309 3161 26 82 0 0 chr11 32429714 32429775 -118353778 + AT_rich Low_complexity Low_complexity 1 61 0 2164 121 0 0 chr11 32429785 32430083 -118353470 + AluSx SINE Alu 3 300 -12 717 170 216 0 chr11 32430676 32430847 -118352706 - MER3 DNA MER1_type 0 209 2 731 261 23 68 chr11 32430849 32431113 -118352440 + MIR SINE MIR 11 262 0 1279 251 89 18 chr11 32432348 32432909 -118350644 + L1MC4 LINE L1 7442 8042 0 1473 134 5 5 chr11 32437108 32437324 -118346229 - AluJb SINE Alu -13 299 84 231 125 0 0 chr11 32438379 32438419 -118345134 + (CATA)n Simple_repeat Simple_repeat 2 41 0 270 236 0 0 chr11 32438454 32438509 -118345044 - Tigger6 DNA MER2_type -1542 55 1 22 35 0 0 chr11 32439265 32439294 -118344259 + AT_rich Low_complexity Low_complexity 1 29 0 520 196 49 136 chr11 32440822 32441006 -118342547 - L2 LINE L2 0 3313 3146 1269 191 127 78 chr11 32441009 32441281 -118342272 - MER69 DNA AcHobo -3 2523 2215 3253 53 0 0 chr11 32441281 32441693 -118341860 - L1PA5 LINE L1 -3 6151 5740 1269 191 127 78 chr11 32441693 32441908 -118341645 - MER69 DNA AcHobo -311 2215 2012 1410 267 201 8 chr11 32441909 32442381 -118341172 - MER69 DNA AcHobo -659 567 5 720 252 198 49 chr11 32442385 32442925 -118340628 - L2 LINE L2 -162 3151 2540 654 294 98 13 chr11 32443644 32444039 -118339514 - LTR16A LTR ERVL 0 491 1 184 221 147 15 chr11 32444108 32444176 -118339377 - MIR SINE MIR -121 141 65 23 33 0 0 chr11 32444656 32444686 -118338867 + AT_rich Low_complexity Low_complexity 1 30 0 449 250 83 0 chr11 32448476 32448608 -118334945 + MER69 DNA AcHobo 2383 2525 -1 288 260 14 27 chr11 32450354 32450427 -118333126 - MER5B DNA MER1_type -3 175 104 1908 225 94 60 chr11 32450431 32451487 -118332066 + MER63C DNA MER1_type 5 925 -5 235 271 59 59 chr11 32451489 32451574 -118331979 + MER5B DNA MER1_type 78 162 -16 316 192 288 0 chr11 32451786 32451859 -118331694 + MER81 DNA DNA 2 95 -19 345 148 0 74 chr11 32451866 32451947 -118331606 + MER3 DNA MER1_type 135 209 0 1983 107 0 0 chr11 32452046 32452335 -118331218 - L1P LINE L1 -2032 4114 3826 6204 97 22 3 chr11 32452335 32453924 -118329629 + L1PA10 LINE L1 4555 6164 -4 26 74 0 0 chr11 32456037 32456091 -118327462 + AT_rich Low_complexity Low_complexity 1 54 0 24 0 0 0 chr11 32456221 32456245 -118327308 + AT_rich Low_complexity Low_complexity 1 24 0 235 313 43 0 chr11 32456611 32456698 -118326855 + MIR SINE MIR 23 116 -107 1063 216 0 43 chr11 32457385 32457617 -118325936 - MER58A DNA MER1_type -1 223 2 391 386 38 0 chr11 32457992 32458150 -118325403 - MIR3 SINE MIR -39 169 6 907 244 30 60 chr11 32458320 32458619 -118324934 + MLT1I LTR MaLR 101 390 -19 303 216 0 105 chr11 32458845 32458889 -118324664 + A-rich Low_complexity Low_complexity 2 49 -89 2854 13 0 0 chr11 32458889 32459202 -118324351 + AluYb8 SINE Alu 1 313 -5 303 216 0 105 chr11 32459202 32459310 -118324243 + A-rich Low_complexity Low_complexity 49 138 0 2270 110 3 0 chr11 32461682 32461991 -118321562 - AluSx SINE Alu -2 310 1 699 307 53 14 chr11 32462249 32462649 -118320904 + LTR16B LTR ERVL 8 464 0 1778 189 0 3 chr11 32462701 32462997 -118320556 + AluJo SINE Alu 1 295 -17 22 0 0 0 chr11 32462997 32463019 -118320534 + AT_rich Low_complexity Low_complexity 1 22 0 2334 65 17 0 chr11 32465344 32465636 -118317917 - AluSg SINE Alu -13 297 1 563 154 8 86 chr11 32466961 32467078 -118316475 - MER58A DNA MER1_type -1 223 116 200 184 20 0 chr11 32467088 32467137 -118316416 + (TA)n Simple_repeat Simple_repeat 2 51 0 350 258 0 72 chr11 32467175 32467272 -118316281 - MER58A DNA MER1_type -17 90 1 294 29 0 0 chr11 32470463 32470498 -118313055 + (TG)n Simple_repeat Simple_repeat 2 36 0 26 74 0 0 chr11 32470645 32470699 -118312854 + AT_rich Low_complexity Low_complexity 1 54 0 33 43 0 0 chr11 32471265 32471312 -118312241 + AT_rich Low_complexity Low_complexity 1 47 0 207 294 0 0 chr11 32471787 32471838 -118311715 + MIR SINE MIR 48 98 -164 1907 115 19 39 chr11 32472113 32472425 -118311128 - AluSx SINE Alu -6 306 1 252 300 36 61 chr11 32472425 32472702 -118310851 - L1ME LINE L1 -502 5619 5350 26 0 0 0 chr11 32472980 32473006 -118310547 + AT_rich Low_complexity Low_complexity 1 26 0 383 196 31 21 chr11 32473114 32473211 -118310342 - MER46C DNA MER2_type -2 336 239 2064 112 3 45 chr11 32474062 32474374 -118309179 - AluSx SINE Alu -13 299 1 225 132 0 0 chr11 32476199 32476237 -118307316 + (A)n Simple_repeat Simple_repeat 1 38 0 1308 133 177 20 chr11 32476253 32476526 -118307027 + AluSx SINE Alu 1 312 0 229 30 0 0 chr11 32476671 32476704 -118306849 + Alu SINE Alu 260 292 -7 340 235 69 93 chr11 32476713 32476738 -118306815 + L1ME4a LINE L1 5611 5635 -486 4824 91 39 13 chr11 32476738 32477232 -118306321 - L1PB2 LINE L1 0 6151 5631 5149 78 1 27 chr11 32477232 32477938 -118305615 + LTR12 LTR ERV1 1 688 0 4824 91 39 13 chr11 32477938 32478155 -118305398 - L1ME4a LINE L1 -520 5631 5421 340 235 69 93 chr11 32478155 32478394 -118305159 + L1ME4a LINE L1 5635 5883 -238 228 35 0 0 chr11 32478561 32478590 -118304963 + (TCTA)n Simple_repeat Simple_repeat 2 30 0 307 295 0 21 chr11 32479107 32479202 -118304351 - MIR SINE MIR -137 125 33 1250 129 117 0 chr11 32479834 32480082 -118303471 + L1MA7 LINE L1 6015 6291 0 543 255 34 20 chr11 32480252 32480401 -118303152 - MLT1J1 LTR MaLR -295 151 1 227 283 103 21 chr11 32481106 32481251 -118302302 + L2 LINE L2 2701 2857 -457 2133 105 0 0 chr11 32481489 32481774 -118301779 + AluSx SINE Alu 1 285 -27 297 0 0 0 chr11 32481774 32481807 -118301746 + (CA)n Simple_repeat Simple_repeat 2 34 0 213 65 0 0 chr11 32481848 32481879 -118301674 + (CA)n Simple_repeat Simple_repeat 1 31 0 258 298 78 120 chr11 32481879 32481914 -118301639 + L2 LINE L2 2928 2963 -309 2156 128 128 10 chr11 32481914 32482297 -118301256 + MSTA LTR MaLR 1 428 0 258 298 78 120 chr11 32482297 32482570 -118300983 + L2 LINE L2 2963 3223 -49 269 133 22 0 chr11 32483298 32483343 -118300210 - L2 LINE L2 -19 3294 3249 414 338 125 40 chr11 32483524 32483820 -118299733 - L2 LINE L2 -6 3266 2946 203 271 114 14 chr11 32483859 32483929 -118299624 - MIR SINE MIR -75 187 111 1589 191 72 6 chr11 32484032 32484394 -118299159 - MER58D DNA MER1_type 0 386 1 1103 178 91 0 chr11 32484417 32484670 -118298883 - MER33 DNA MER1_type 0 324 49 312 295 36 18 chr11 32484737 32484849 -118298704 - Charlie8 DNA MER1_type -2160 257 144 1306 163 130 43 chr11 32485086 32485362 -118298191 + AluJo SINE Alu 1 300 -12 375 181 0 0 chr11 32485362 32485434 -118298119 + (TA)n Simple_repeat Simple_repeat 1 72 0 1938 170 24 19 chr11 32485435 32485858 -118297695 + L1MB3 LINE L1 5757 6181 -2 1785 141 17 47 chr11 32485890 32486079 -118297474 - L1MA8 LINE L1 -1 6290 6097 189 74 0 0 chr11 32486079 32486106 -118297447 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 2423 50 0 30 chr11 32486106 32486405 -118297148 - AluY SINE Alu -21 290 1 1785 141 17 47 chr11 32486405 32486575 -118296978 - L1MA8 LINE L1 -192 6099 5941 231 198 27 63 chr11 32486936 32487047 -118296506 + A-rich Low_complexity Low_complexity 5 111 0 267 316 13 0 chr11 32491100 32491179 -118292374 - MER119 DNA MER1_type -499 84 5 552 184 87 0 chr11 32492166 32492269 -118291284 + Tigger3(Golem) DNA MER2_type 2 113 -2916 * 4690 105 57 20 chr11 32492266 32493069 -118290484 + Tigger3(Golem) DNA MER2_type 2069 2901 -128 573 244 18 83 chr11 32493121 32493321 -118290232 - L1MC/D LINE L1 -743 5403 5389 1701 155 72 11 chr11 32493321 32493599 -118289954 - AluJo SINE Alu -17 295 1 573 244 18 83 chr11 32493599 32493754 -118289799 - L1MC/D LINE L1 -757 5389 5226 916 204 14 24 chr11 32494390 32494601 -118288952 + L1MC3 LINE L1 6100 6308 -1477 222 235 20 0 chr11 32494624 32494675 -118288878 + GA-rich Low_complexity Low_complexity 2 53 0 456 275 8 15 chr11 32495742 32495873 -118287680 - MER5B DNA MER1_type -3 175 46 205 381 17 17 chr11 32496385 32496503 -118287050 + L2 LINE L2 3160 3277 -36 593 291 41 57 chr11 32496599 32496843 -118286710 + MIR SINE MIR 19 258 -4 22 0 0 0 chr11 32496845 32496867 -118286686 + AT_rich Low_complexity Low_complexity 1 22 0 2867 95 10 0 chr11 32496931 32497356 -118286197 + L1PA8A LINE L1 5701 6166 -6 349 250 234 0 chr11 32497616 32497740 -118285813 - L2 LINE L2 0 3313 3161 204 338 15 0 chr11 32498130 32498198 -118285355 - L2 LINE L2 -666 2648 2580 2230 88 7 0 chr11 32498800 32499116 -118284437 - AluSp SINE Alu 0 318 1 1006 260 5 0 chr11 32499204 32499427 -118284126 - MER58A DNA MER1_type 0 224 1 478 259 91 28 chr11 32499433 32499576 -118283977 - MLT1I LTR MaLR -66 343 192 29 0 0 0 chr11 32500143 32500172 -118283381 + AT_rich Low_complexity Low_complexity 1 29 0 2324 171 26 9 chr11 32500464 32500891 -118282662 - Tigger2a DNA MER2_type 0 434 1 202 254 16 16 chr11 32500970 32501033 -118282520 - MIR3 SINE MIR -5 203 141 24 53 0 0 chr11 32501135 32501173 -118282380 + AT_rich Low_complexity Low_complexity 1 38 0 300 70 0 0 chr11 32501717 32501760 -118281793 + (CA)n Simple_repeat Simple_repeat 1 43 0 7080 179 112 23 chr11 32501883 32503306 -118280247 + MER52A LTR ERV1 1 1550 -205 5255 239 22 25 chr11 32503702 32506137 -118277416 + L1MA6 LINE L1 2055 4173 -3392 3432 165 34 30 chr11 32506138 32506682 -118276871 + L1MA6 LINE L1 6168 6708 -1011 2214 118 0 0 chr11 32506682 32506979 -118276574 - AluSg SINE Alu -13 297 1 3432 165 34 30 chr11 32506979 32507651 -118275902 + L1MA6 LINE L1 6708 7403 -316 2640 146 29 12 chr11 32507642 32508122 -118275431 + L1M2 LINE L1 4924 5411 -2154 * 1283 189 11 23 chr11 32508123 32508388 -118275165 + L1MA6 LINE L1 7412 7673 -46 * 12233 145 59 118 chr11 32508387 32510582 -118272971 + L1PA7 LINE L1 2 2327 -3819 212 0 36 0 chr11 32510582 32510610 -118272943 + (CAA)n Simple_repeat Simple_repeat 2 30 0 12233 145 59 118 chr11 32510610 32511488 -118272065 + L1PA7 LINE L1 2327 2890 -3256 8273 76 16 0 chr11 32511488 32513408 -118270145 + L1PA7 LINE L1 4205 6152 -2 12233 145 59 118 chr11 32513408 32513439 -118270114 + L1PA7 LINE L1 2890 2921 -3225 768 297 84 16 chr11 32513958 32514388 -118269165 + L2 LINE L2 2593 3060 -253 437 180 169 0 chr11 32515128 32515217 -118268336 + L2 LINE L2 3208 3311 -2 318 297 10 40 chr11 32515289 32515390 -118268163 + L2 LINE L2 3175 3272 0 499 242 83 0 chr11 32515988 32516108 -118267445 - FLAM_A SINE Alu -2 131 2 247 279 115 49 chr11 32516111 32516233 -118267320 - MIR SINE MIR -64 198 69 348 216 93 103 chr11 32516337 32516531 -118267022 - L2 LINE L2 0 3313 3122 1817 214 0 14 chr11 32516790 32517160 -118266393 + MLT1A1 LTR MaLR 1 365 0 2221 185 66 27 chr11 32517447 32517933 -118265620 - MLT1D LTR MaLR 0 505 1 474 288 73 6 chr11 32518170 32518347 -118265206 - MIR SINE MIR -26 236 48 534 298 174 20 chr11 32518463 32518859 -118264694 - L1MC/D LINE L1 -2038 5770 5314 1674 129 32 110 chr11 32518897 32519269 -118264284 + MER2 DNA MER2_type 1 343 -1 351 328 140 9 chr11 32519978 32520207 -118263346 + L2 LINE L2 2391 2649 -665 243 352 52 48 chr11 32520351 32520581 -118262972 + L2 LINE L2 2823 3053 -219 2741 193 16 39 chr11 32520719 32521284 -118262269 + MLT2B3 LTR ERVL 3 554 0 1196 184 5 5 chr11 32521309 32521516 -118262037 + MER46A DNA MER2_type 1 207 -29 1026 249 140 10 chr11 32522362 32522856 -118260697 - L1ME4a LINE L1 -1 6120 5563 355 288 125 27 chr11 32523196 32523380 -118260173 + MIR3 SINE MIR 6 207 -1 419 256 130 70 chr11 32523540 32523841 -118259712 + L2 LINE L2 2995 3313 0 2760 226 69 30 chr11 32524230 32524988 -118258565 - MER21B LTR ERV1 -58 805 19 451 162 27 0 chr11 32525014 32525088 -118258465 - MER21B LTR ERV1 -773 90 15 358 285 151 12 chr11 32525445 32525617 -118257936 - MIR SINE MIR -65 197 2 325 306 116 7 chr11 32525832 32525979 -118257574 + MIR SINE MIR 50 212 -50 22 35 0 0 chr11 32526389 32526418 -118257135 + AT_rich Low_complexity Low_complexity 1 29 0 26 0 0 0 chr11 32528619 32528645 -118254908 + AT_rich Low_complexity Low_complexity 1 26 0 24 53 0 0 chr11 32528807 32528845 -118254708 + AT_rich Low_complexity Low_complexity 1 38 0 263 333 137 0 chr11 32529044 32529161 -118254392 + L2 LINE L2 3181 3313 0 41 48 0 0 chr11 32529246 32529308 -118254245 + AT_rich Low_complexity Low_complexity 1 62 0 1738 176 0 26 chr11 32530270 32530577 -118252976 + AluJb SINE Alu 2 300 -12 281 273 68 8 chr11 32531786 32531918 -118251635 + L1M4 LINE L1 4080 4219 -1927 596 225 70 7 chr11 32532031 32532173 -118251380 + MER63A DNA MER1_type 60 210 0 302 246 36 22 chr11 32532178 32532316 -118251237 + L1M4 LINE L1 2956 3095 -3051 2038 119 3 0 chr11 32532538 32532840 -118250713 + AluSx SINE Alu 10 312 0 848 230 125 10 chr11 32533149 32533349 -118250204 + MER58A DNA MER1_type 2 224 0 900 151 38 16 chr11 32533714 32533899 -118249654 + MER53 DNA DNA 1 189 0 267 106 0 0 chr11 32533924 32533971 -118249582 + L1MA3 LINE L1 6259 6305 0 516 261 195 8 chr11 32534106 32534347 -118249206 + L1MC4 LINE L1 7206 7491 -551 2028 112 0 10 chr11 32534398 32534703 -118248850 - AluSg SINE Alu -8 302 1 652 226 107 29 chr11 32534709 32534952 -118248601 + Charlie4 DNA MER1_type 1 262 -1699 679 229 35 6 chr11 32535082 32535252 -118248301 + MIR SINE MIR 88 262 0 24 32 0 0 chr11 32535274 32535305 -118248248 + AT_rich Low_complexity Low_complexity 1 31 0 2277 291 181 19 chr11 32535455 32537056 -118246497 + L2 LINE L2 1414 3295 -18 2389 97 0 0 chr11 32538420 32538730 -118244823 + AluSg SINE Alu 1 310 0 331 229 236 14 chr11 32538755 32538899 -118244654 - MIR SINE MIR -31 231 56 2450 64 0 3 chr11 32539790 32540088 -118243465 + AluY SINE Alu 1 297 -14 21 57 0 0 chr11 32540141 32540176 -118243377 + AT_rich Low_complexity Low_complexity 1 35 0 328 294 112 42 chr11 32540452 32540896 -118242657 + L1MC/D LINE L1 5270 5758 -363 558 0 0 0 chr11 32541090 32541152 -118242401 + (TC)n Simple_repeat Simple_repeat 2 63 0 2279 99 0 10 chr11 32541426 32541730 -118241823 + AluSg SINE Alu 1 301 -9 207 286 0 0 chr11 32541887 32541936 -118241617 + (TATATG)n Simple_repeat Simple_repeat 1 49 0 35 0 0 0 chr11 32542919 32542954 -118240599 + AT_rich Low_complexity Low_complexity 1 35 0 742 160 0 8 chr11 32543143 32543274 -118240279 + FLAM_A SINE Alu 6 135 -7 2256 92 3 3 chr11 32543502 32543795 -118239758 + AluSc SINE Alu 1 293 -16 194 254 85 0 chr11 32544843 32544902 -118238651 + L2 LINE L2 2667 2730 -584 198 118 0 0 chr11 32547081 32547115 -118236438 + (CA)n Simple_repeat Simple_repeat 1 34 0 23 68 0 0 chr11 32547161 32547205 -118236348 + AT_rich Low_complexity Low_complexity 1 44 0 638 258 44 81 chr11 32547724 32547995 -118235558 - MIR SINE MIR 0 262 2 487 237 182 36 chr11 32548341 32548594 -118234959 + MARNA DNA Mariner 288 577 -9 1401 236 25 19 chr11 32548716 32549081 -118234472 - MLT1A2 LTR MaLR -4 370 4 4003 198 179 27 chr11 32549104 32550043 -118233510 - MLT1A2-int LTR MaLR -24 1347 156 2074 136 3 3 chr11 32550043 32550352 -118233201 - AluSx SINE Alu -3 309 1 4003 198 179 27 chr11 32550352 32550532 -118233021 - MLT1A2-int LTR MaLR -1215 156 5 1270 251 29 42 chr11 32550536 32550915 -118232638 - MLT1A2 LTR MaLR 0 374 1 237 108 0 0 chr11 32551309 32551346 -118232207 + (TATG)n Simple_repeat Simple_repeat 1 37 0 658 275 85 64 chr11 32551347 32551783 -118231770 + L1ME3A LINE L1 5504 5948 -222 280 250 14 0 chr11 32551783 32551855 -118231698 + (TA)n Simple_repeat Simple_repeat 2 74 0 2568 75 8 22 chr11 32551855 32552215 -118231338 + THE1A LTR MaLR 1 355 0 219 114 0 0 chr11 32552217 32552252 -118231301 + (TA)n Simple_repeat Simple_repeat 1 35 0 5944 97 6 18 chr11 32552252 32553515 -118230038 + L1PB2 LINE L1 4892 6148 -3 282 196 33 0 chr11 32553528 32553620 -118229933 + (TA)n Simple_repeat Simple_repeat 1 95 0 207 191 0 0 chr11 32553681 32553744 -118229809 + (TA)n Simple_repeat Simple_repeat 2 64 0 2955 263 115 25 chr11 32554229 32555124 -118228429 + L1MEc LINE L1 1137 1950 -4265 2108 176 73 2 chr11 32555124 32555522 -118228031 - MSTB LTR MaLR 0 426 1 2955 263 115 25 chr11 32555522 32556854 -118226699 + L1MEc LINE L1 1950 3538 -2677 1034 124 118 11 chr11 32556856 32557042 -118226511 + L1PA16 LINE L1 5952 6157 -9 1228 253 44 52 chr11 32557061 32557543 -118226010 + L1MEc LINE L1 3524 4001 -2214 2721 183 40 5 chr11 32557663 32558232 -118225321 + L1 LINE L1 3791 4379 -1767 411 170 21 11 chr11 32558232 32558320 -118225233 + L1MB2 LINE L1 6075 6169 -2 192 125 0 0 chr11 32558344 32558376 -118225177 + (A)n Simple_repeat Simple_repeat 1 32 0 881 190 37 33 chr11 32558698 32558940 -118224613 - Charlie2 DNA MER1_type -45 2817 2575 1650 151 4 14 chr11 32558946 32559224 -118224329 - AluJo SINE Alu -9 303 29 999 236 64 22 chr11 32559267 32559640 -118223913 - Charlie2 DNA MER1_type -2427 435 13 190 323 71 24 chr11 32560634 32560761 -118222792 + MIR3 SINE MIR 43 175 -33 * 450 229 49 69 chr11 32560746 32560805 -118222748 - MIR SINE MIR -1 261 202 2137 109 3 0 chr11 32560805 32561090 -118222463 + AluSx SINE Alu 11 296 -16 450 229 49 69 chr11 32561090 32561174 -118222379 - MIR SINE MIR -60 202 121 237 320 67 0 chr11 32561145 32561220 -118222333 + MIR3 SINE MIR 124 203 -5 * 192 293 66 78 chr11 32561276 32561443 -118222110 + L2 LINE L2 3127 3291 -22 493 120 0 0 chr11 32561870 32561945 -118221608 + Charlie5 DNA MER1_type 33 107 -2505 25 51 0 0 chr11 32563564 32563603 -118219950 + AT_rich Low_complexity Low_complexity 1 39 0 24 32 0 0 chr11 32563752 32563783 -118219770 + AT_rich Low_complexity Low_complexity 1 31 0 30 0 0 0 chr11 32567755 32567785 -118215768 + AT_rich Low_complexity Low_complexity 1 30 0 22 56 0 0 chr11 32569388 32569424 -118214129 + AT_rich Low_complexity Low_complexity 1 36 0 21 82 0 0 chr11 32571107 32571156 -118212397 + AT_rich Low_complexity Low_complexity 1 49 0 23 0 0 0 chr11 32572117 32572140 -118211413 + AT_rich Low_complexity Low_complexity 1 23 0 23 54 0 0 chr11 32572195 32572232 -118211321 + AT_rich Low_complexity Low_complexity 1 37 0 272 318 32 40 chr11 32573045 32573171 -118210382 + L2 LINE L2 2968 3092 -180 187 254 0 90 chr11 32576448 32576515 -118207038 + MIR SINE MIR 101 161 -101 340 281 91 16 chr11 32577815 32577936 -118205617 + L3 LINE CR1 214 343 -1234 291 54 0 0 chr11 32578374 32578411 -118205142 + (CA)n Simple_repeat Simple_repeat 2 38 0 186 43 0 0 chr11 32578411 32578434 -118205119 + (TA)n Simple_repeat Simple_repeat 1 23 0 2326 92 0 0 chr11 32578747 32579041 -118204512 - AluSc SINE Alu -15 294 1 302 282 73 36 chr11 32579069 32579179 -118204374 - L2 LINE L2 -32 3281 3168 986 251 119 25 chr11 32579257 32579584 -118203969 + MLT2D LTR ERVL 1 358 -56 264 77 0 0 chr11 32579586 32579625 -118203928 + (GA)n Simple_repeat Simple_repeat 2 40 0 304 322 87 33 chr11 32579709 32579951 -118203602 - L2 LINE L2 -214 3058 2804 1239 318 223 13 chr11 32580120 32580942 -118202611 + L3 LINE CR1 570 1563 -14 22 35 0 0 chr11 32581263 32581292 -118202261 + AT_rich Low_complexity Low_complexity 1 29 0 697 67 0 0 chr11 32581345 32581435 -118202118 - AluY SINE Alu -12 299 210 640 225 51 0 chr11 32581639 32581777 -118201776 + MLT1F1 LTR MaLR 422 566 -1 244 225 70 14 chr11 32581984 32582055 -118201498 + MLT1I LTR MaLR 286 360 -49 543 220 240 15 chr11 32582562 32582762 -118200791 - MLT1H LTR MaLR -19 530 286 4313 182 25 24 chr11 32582776 32583465 -118200088 - L1MB5 LINE L1 -8 6166 5480 198 71 0 0 chr11 32583465 32583493 -118200060 + (TG)n Simple_repeat Simple_repeat 1 28 0 4313 182 25 24 chr11 32583493 32584258 -118199295 - L1MB5 LINE L1 -694 5480 4714 471 257 37 86 chr11 32584275 32584462 -118199091 - MER21B LTR ERV1 -196 667 490 21 0 0 0 chr11 32584736 32584757 -118198796 + AT_rich Low_complexity Low_complexity 1 21 0 408 40 0 0 chr11 32585685 32585735 -118197818 + (CA)n Simple_repeat Simple_repeat 2 51 0 2175 96 0 7 chr11 32587064 32587357 -118196196 + AluSq SINE Alu 5 295 -18 882 224 98 5 chr11 32587423 32587628 -118195925 - MIR SINE MIR -24 238 15 1302 211 88 6 chr11 32589409 32589727 -118193826 - MER2 DNA MER2_type -1 344 1 1702 156 20 23 chr11 32589975 32590276 -118193277 + AluJo SINE Alu 1 300 -12 289 320 80 0 chr11 32592101 32592226 -118191327 - L2 LINE L2 -1 3271 3137 189 147 0 0 chr11 32592422 32592456 -118191097 + (GA)n Simple_repeat Simple_repeat 1 34 0 807 263 120 0 chr11 32592460 32592669 -118190884 + MIR SINE MIR 8 241 -21 621 215 40 118 chr11 32592778 32593006 -118190547 - MER63A DNA MER1_type 0 210 1 21 57 0 0 chr11 32593225 32593260 -118190293 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr11 32593601 32593624 -118189929 + AT_rich Low_complexity Low_complexity 1 23 0 340 275 130 25 chr11 32593664 32593940 -118189613 + L1ME4a LINE L1 5799 6103 -18 2214 101 0 3 chr11 32595185 32595483 -118188070 - AluSp SINE Alu -16 297 1 27 0 0 0 chr11 32596304 32596331 -118187222 + AT_rich Low_complexity Low_complexity 1 27 0 3793 91 18 7 chr11 32596360 32596911 -118186642 - L1PA16 LINE L1 -156 6010 5454 1693 179 3 13 chr11 32597376 32597677 -118185876 - AluJb SINE Alu -14 298 1 1365 245 28 3 chr11 32598112 32598435 -118185118 + MER58B DNA MER1_type 2 332 -9 361 326 144 33 chr11 32598441 32598656 -118184897 + L2 LINE L2 189 427 -2887 1128 343 82 21 chr11 32598843 32599644 -118183909 + L2 LINE L2 1104 1953 -1361 2050 117 46 57 chr11 32599654 32599872 -118183681 - THE1B LTR MaLR 0 364 150 2164 108 0 3 chr11 32599872 32600168 -118183385 + AluSg SINE Alu 1 295 -15 2050 117 46 57 chr11 32600168 32600317 -118183236 - THE1B LTR MaLR -214 150 1 9280 99 138 4 chr11 32600332 32601721 -118181832 - THE1B-int LTR MaLR -5 1575 1 2107 111 63 23 chr11 32601721 32602071 -118181482 - THE1B LTR MaLR 0 364 1 350 239 150 0 chr11 32602281 32602394 -118181159 - L2 LINE L2 0 3313 3184 2107 136 0 0 chr11 32602706 32603001 -118180552 - AluSg SINE Alu -12 298 4 376 237 140 0 chr11 32603024 32603138 -118180415 + L2 LINE L2 3184 3313 0 530 221 73 135 chr11 32603366 32603513 -118180040 + MLT1L LTR MaLR 1 123 -492 2009 91 4 0 chr11 32603513 32603776 -118179777 - AluSp SINE Alu -16 297 34 530 221 73 135 chr11 32603776 32603917 -118179636 + MLT1L LTR MaLR 123 271 -344 271 247 196 0 chr11 32604062 32604159 -118179394 + MLT1L LTR MaLR 498 613 -2 230 282 43 37 chr11 32604967 32604985 -118178568 - L1MA10 LINE L1 -2 6332 6315 2685 227 82 60 chr11 32604985 32606318 -118177235 - L1ME2 LINE L1 -10 6223 4842 3037 138 0 8 chr11 32606318 32606818 -118176735 + L1MA8 LINE L1 5793 6288 -3 2685 227 82 60 chr11 32606818 32607245 -118176308 - L1ME2 LINE L1 -1391 4842 4426 3552 60 15 6 chr11 32607433 32607900 -118175653 + L1PA7 LINE L1 5678 6148 -6 2379 263 82 18 chr11 32609058 32609581 -118173972 - L1ME2 LINE L1 -1778 4437 3830 1969 134 45 31 chr11 32609581 32609940 -118173613 + THE1B LTR MaLR 1 364 0 2379 263 82 18 chr11 32609940 32610313 -118173240 - L1ME2 LINE L1 -2385 3830 3483 312 119 60 60 chr11 32610313 32610380 -118173173 - MLT2A2 LTR ERVL 0 453 387 27 49 0 0 chr11 32610419 32610460 -118173093 + AT_rich Low_complexity Low_complexity 1 41 0 424 294 7 0 chr11 32610531 32610667 -118172886 - L1ME2 LINE L1 -3320 2895 2759 1708 261 68 58 chr11 32610669 32611598 -118171955 - L1ME2 LINE L1 -4619 1777 840 296 368 75 10 chr11 32611756 32611957 -118171596 - L1ME2 LINE L1 -5931 465 252 389 335 24 19 chr11 32611984 32612190 -118171363 - L1ME2 LINE L1 -6133 263 57 194 325 193 9 chr11 32612308 32612422 -118171131 + MIR3 SINE MIR 40 174 -34 35 63 0 0 chr11 32612542 32612605 -118170948 + AT_rich Low_complexity Low_complexity 1 63 0 2218 113 0 0 chr11 32612651 32612944 -118170609 - AluSx SINE Alu -19 293 1 702 285 0 16 chr11 32614102 32614288 -118169265 - MER5A DNA MER1_type -6 183 1 235 194 153 40 chr11 32614440 32614564 -118168989 + Charlie7 DNA MER1_type 21 158 -2454 701 282 285 0 chr11 32614590 32614941 -118168612 + HAL1 LINE L1 154 604 -1903 566 305 68 16 chr11 32614953 32615202 -118168351 + HAL1 LINE L1 645 906 -1601 207 25 75 0 chr11 32615219 32615259 -118168294 + A-rich Low_complexity Low_complexity 1 43 0 529 278 128 21 chr11 32615338 32615911 -118167642 + HAL1 LINE L1 1185 1887 -620 23 33 0 0 chr11 32616828 32616858 -118166695 + AT_rich Low_complexity Low_complexity 1 30 0 268 396 53 27 chr11 32617220 32617407 -118166146 - L3b LINE CR1 -8 1575 1384 856 239 58 5 chr11 32617699 32617904 -118165649 - MIR SINE MIR -10 252 37 2583 164 33 14 chr11 32620272 32620783 -118162770 + L1MB5 LINE L1 5646 6166 -8 237 336 211 19 chr11 32620949 32621157 -118162396 + MIR SINE MIR 9 256 -6 704 219 57 10 chr11 32621221 32621419 -118162134 - LTR33A LTR ERVL -3 520 309 458 215 188 13 chr11 32621449 32621598 -118161955 - MER96 DNA MER1_type? 0 175 1 876 255 75 0 chr11 32621650 32621862 -118161691 - MIR SINE MIR -27 235 8 181 281 211 44 chr11 32622046 32622160 -118161393 - L2 LINE L2 -2 3270 3138 193 272 79 50 chr11 32622171 32622307 -118161246 - L2 LINE L2 -288 3025 2880 2129 76 0 11 chr11 32622307 32622583 -118160970 + AluSq SINE Alu 5 277 -36 193 272 79 50 chr11 32622583 32622648 -118160905 - L2 LINE L2 -433 2880 2818 888 137 11 22 chr11 32622685 32622867 -118160686 + GA-rich Low_complexity Low_complexity 1 180 0 240 320 90 16 chr11 32622876 32622998 -118160555 - L2 LINE L2 -456 2858 2728 1582 163 77 25 chr11 32623016 32623342 -118160211 + MER2 DNA MER2_type 1 343 -1 1330 195 78 67 chr11 32623353 32623804 -118159749 + LTR16A1 LTR ERVL 1 456 -1 312 91 0 0 chr11 32624072 32624116 -118159437 + (CAGC)n Simple_repeat Simple_repeat 2 45 0 277 239 177 35 chr11 32624134 32624247 -118159306 - L2 LINE L2 -7 3306 3178 1243 102 30 5 chr11 32624398 32624595 -118158958 - THE1C-int LTR MaLR -1378 202 1 2123 142 11 26 chr11 32624595 32624976 -118158577 - THE1C LTR MaLR 0 375 1 1992 101 49 11 chr11 32625357 32625644 -118157909 - AluSg SINE Alu -12 298 1 1786 116 0 92 chr11 32625766 32626094 -118157459 + MER4A LTR ERV1 367 664 0 2231 113 0 0 chr11 32627853 32628155 -118155398 - AluSc SINE Alu -7 302 1 335 234 43 0 chr11 32628155 32628241 -118155312 - MIR SINE MIR -94 168 76 213 271 75 75 chr11 32628477 32628584 -118154969 - MIR SINE MIR -108 154 48 205 125 0 0 chr11 32631069 32631101 -118152452 + L2 LINE L2 3272 3303 -10 315 211 18 0 chr11 32631206 32631263 -118152290 + L2 LINE L2 3214 3271 -1 24 0 0 0 chr11 32634678 32634702 -118148851 + AT_rich Low_complexity Low_complexity 1 24 0 27 62 0 0 chr11 32634828 32634876 -118148677 + AT_rich Low_complexity Low_complexity 1 48 0 21 0 0 0 chr11 32635080 32635101 -118148452 + AT_rich Low_complexity Low_complexity 1 21 0 207 69 0 0 chr11 32635491 32635520 -118148033 + (CAAAAA)n Simple_repeat Simple_repeat 1 29 0 745 322 13 9 chr11 32635989 32636222 -118147331 - MIR SINE MIR -27 235 2 499 245 39 0 chr11 32636516 32636618 -118146935 - MER81 DNA DNA -8 106 1 21 36 0 0 chr11 32636754 32636782 -118146771 + AT_rich Low_complexity Low_complexity 1 28 0 339 25 0 0 chr11 32637137 32637177 -118146376 + (TG)n Simple_repeat Simple_repeat 1 40 0 25 0 0 0 chr11 32638109 32638134 -118145419 + AT_rich Low_complexity Low_complexity 1 25 0 2154 100 36 3 chr11 32638302 32638603 -118144950 - AluY SINE Alu 0 311 1 506 216 144 0 chr11 32640229 32640354 -118143199 - MIR SINE MIR -2 260 118 2250 172 50 23 chr11 32640389 32640826 -118142727 + MLT2B1 LTR ERVL 1 449 -71 787 142 8 15 chr11 32640869 32641003 -118142550 + FLAM_C SINE Alu 1 133 -10 48 18 0 0 chr11 32641014 32641069 -118142484 + AT_rich Low_complexity Low_complexity 1 55 0 255 62 0 0 chr11 32641069 32641101 -118142452 + MLT2C1 LTR ERVL 358 389 -8 301 290 36 21 chr11 32641105 32641298 -118142255 - L1MEc LINE L1 -4178 2218 2023 267 309 54 40 chr11 32641358 32641507 -118142046 - L1MEc LINE L1 -5699 506 356 24 53 0 0 chr11 32641527 32641565 -118141988 + AT_rich Low_complexity Low_complexity 1 38 0 265 396 53 27 chr11 32691894 32692081 -118091472 - L3b LINE CR1 -8 1575 1384 860 239 58 5 chr11 32692373 32692578 -118090975 - MIR SINE MIR -10 252 37 2571 164 33 14 chr11 32694946 32695457 -118088096 + L1MB5 LINE L1 5646 6166 -8 234 336 211 19 chr11 32695624 32695832 -118087721 + MIR SINE MIR 9 256 -6 713 219 57 10 chr11 32695896 32696094 -118087459 - LTR33A LTR ERVL -3 520 309 468 215 188 13 chr11 32696124 32696273 -118087280 - MER96 DNA MER1_type? 0 175 1 876 255 75 0 chr11 32696325 32696537 -118087016 - MIR SINE MIR -27 235 8 187 272 211 44 chr11 32696721 32696835 -118086718 - L2 LINE L2 -2 3270 3138 215 287 79 50 chr11 32696846 32696982 -118086571 - L2 LINE L2 -288 3025 2880 2142 80 0 11 chr11 32696982 32697258 -118086295 + AluSq SINE Alu 5 277 -36 215 287 79 50 chr11 32697258 32697323 -118086230 - L2 LINE L2 -433 2880 2818 212 175 25 0 chr11 32697323 32697363 -118086190 + GA-rich Low_complexity Low_complexity 1 41 0 906 134 0 32 chr11 32697364 32697550 -118086003 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 244 320 90 16 chr11 32697559 32697681 -118085872 - L2 LINE L2 -456 2858 2728 1578 163 77 25 chr11 32697699 32698025 -118085528 + MER2 DNA MER2_type 1 343 -1 1373 195 78 67 chr11 32698036 32698487 -118085066 + LTR16A1 LTR ERVL 1 456 -1 312 91 0 0 chr11 32698755 32698799 -118084754 + (CAGC)n Simple_repeat Simple_repeat 2 45 0 276 239 177 35 chr11 32698817 32698930 -118084623 - L2 LINE L2 -7 3306 3178 1248 102 30 5 chr11 32699081 32699278 -118084275 - THE1C-int LTR MaLR -1378 202 1 2163 145 11 21 chr11 32699278 32699657 -118083896 - THE1C LTR MaLR 0 375 1 2007 104 49 11 chr11 32700038 32700325 -118083228 - AluSg SINE Alu -12 298 1 1815 113 0 92 chr11 32700447 32700775 -118082778 + MER4A LTR ERV1 367 664 0 2259 113 0 0 chr11 32702534 32702836 -118080717 - AluSc SINE Alu -7 302 1 336 234 43 0 chr11 32702836 32702922 -118080631 - MIR SINE MIR -94 168 76 215 271 75 75 chr11 32703158 32703265 -118080288 - MIR SINE MIR -108 154 48 204 125 0 0 chr11 32705751 32705783 -118077770 + L2 LINE L2 3272 3303 -10 313 211 18 0 chr11 32705888 32705945 -118077608 + L2 LINE L2 3214 3271 -1 24 0 0 0 chr11 32709360 32709384 -118074169 + AT_rich Low_complexity Low_complexity 1 24 0 27 62 0 0 chr11 32709510 32709558 -118073995 + AT_rich Low_complexity Low_complexity 1 48 0 21 0 0 0 chr11 32709762 32709783 -118073770 + AT_rich Low_complexity Low_complexity 1 21 0 207 69 0 0 chr11 32710173 32710202 -118073351 + (CAAAAA)n Simple_repeat Simple_repeat 1 29 0 738 322 13 9 chr11 32710671 32710904 -118072649 - MIR SINE MIR -27 235 2 507 245 39 0 chr11 32711198 32711300 -118072253 - MER81 DNA DNA -8 106 1 21 36 0 0 chr11 32711436 32711464 -118072089 + AT_rich Low_complexity Low_complexity 1 28 0 288 53 0 0 chr11 32711819 32711857 -118071696 + (TG)n Simple_repeat Simple_repeat 1 38 0 226 322 78 26 chr11 32712640 32712755 -118070798 + MLT1K LTR MaLR 3 123 -465 25 0 0 0 chr11 32712789 32712814 -118070739 + AT_rich Low_complexity Low_complexity 1 25 0 2162 100 37 3 chr11 32712989 32713288 -118070265 - AluY SINE Alu -2 309 1 503 216 144 0 chr11 32714914 32715039 -118068514 - MIR SINE MIR -2 260 118 2283 169 50 23 chr11 32715074 32715511 -118068042 + MLT2B1 LTR ERVL 1 449 -71 810 142 8 15 chr11 32715554 32715688 -118067865 + FLAM_C SINE Alu 1 133 -10 48 18 0 0 chr11 32715699 32715754 -118067799 + AT_rich Low_complexity Low_complexity 1 55 0 258 62 0 0 chr11 32715754 32715786 -118067767 + MLT2B1 LTR ERVL 476 507 -8 275 290 36 21 chr11 32715790 32715983 -118067570 - L1MEc LINE L1 -4178 2218 2023 280 281 24 12 chr11 32716110 32716192 -118067361 - L1MEc LINE L1 -5767 438 356 24 53 0 0 chr11 32716212 32716250 -118067303 + AT_rich Low_complexity Low_complexity 1 38 0 201 94 0 0 chr11 32716477 32716509 -118067044 + (CAAAAA)n Simple_repeat Simple_repeat 1 32 0 1403 187 4 16 chr11 32717054 32717305 -118066248 - MLT1E1 LTR MaLR -2 652 405 906 189 0 6 chr11 32717381 32717545 -118066008 - MLT1E1 LTR MaLR -402 252 90 2384 64 0 58 chr11 32717987 32718316 -118065237 - AluY SINE Alu -1 310 1 43053 31 22 1 chr11 32718335 32724361 -118059192 - L1HS LINE L1 0 6155 2 22 0 0 0 chr11 32724427 32724449 -118059104 + AT_rich Low_complexity Low_complexity 1 22 0 1398 246 103 13 chr11 32725113 32725561 -118057992 + MLT1L LTR MaLR 121 608 -7 22 35 0 0 chr11 32727145 32727174 -118056379 + AT_rich Low_complexity Low_complexity 1 29 0 523 250 0 112 chr11 32729730 32729844 -118053709 + MIR SINE MIR 68 193 -69 189 0 0 0 chr11 32729844 32729865 -118053688 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 2252 85 0 3 chr11 32729867 32730150 -118053403 - AluSp SINE Alu -31 282 1 523 250 0 112 chr11 32730150 32730228 -118053325 + MIR SINE MIR 194 241 -21 2147 113 0 7 chr11 32730418 32730710 -118052843 - AluSx SINE Alu -22 290 1 2275 74 0 46 chr11 32731197 32731520 -118052033 + AluY SINE Alu 1 308 -3 261 0 0 0 chr11 32731626 32731655 -118051898 + (T)n Simple_repeat Simple_repeat 1 29 0 647 229 22 49 chr11 32731889 32732072 -118051481 + MLT1K LTR MaLR 377 554 -34 27656 77 8 6 chr11 32732075 32738215 -118045338 - L1PA6 LINE L1 -1 6153 11 519 145 0 13 chr11 32738341 32738417 -118045136 - Charlie3 DNA MER1_type 0 2712 2638 863 286 91 48 chr11 32738674 32739243 -118044310 - L2 LINE L2 -45 3268 2670 931 251 57 22 chr11 32739324 32739784 -118043769 + MLT1J LTR MaLR 1 501 -10 1609 180 29 0 chr11 32740067 32740339 -118043214 + AluJo SINE Alu 1 280 -32 252 0 0 0 chr11 32740339 32740367 -118043186 + (CAAT)n Simple_repeat Simple_repeat 4 31 0 628 268 131 77 chr11 32741196 32741566 -118041987 + MLT1J LTR MaLR 1 442 -69 795 161 37 50 chr11 32741859 32742157 -118041396 + MLT1A1 LTR MaLR 1 365 0 423 296 19 0 chr11 32742255 32742363 -118041190 + L2 LINE L2 3200 3309 -4 189 102 0 61 chr11 32743016 32743065 -118040488 + (GGAGA)n Simple_repeat Simple_repeat 2 47 0 1796 183 17 40 chr11 32743161 32743561 -118039992 + MLT2D LTR ERVL 1 490 -30 513 0 0 0 chr11 32744063 32744120 -118039433 + (TAGA)n Simple_repeat Simple_repeat 4 60 0 1417 167 22 97 chr11 32744120 32744491 -118039062 - MER7A DNA MER2_type -4 342 2 297 0 0 0 chr11 32744493 32744526 -118039027 + (CA)n Simple_repeat Simple_repeat 2 34 0 249 57 29 0 chr11 32744532 32744567 -118038986 + MLT2D LTR ERVL 379 414 0 467 277 139 12 chr11 32744999 32745165 -118038388 + MIR SINE MIR 65 251 -11 1139 200 0 28 chr11 32745664 32745879 -118037674 + AluJo SINE Alu 1 209 -103 648 171 9 9 chr11 32745885 32745996 -118037557 + FRAM SINE Alu 34 144 -32 2243 117 0 0 chr11 32745996 32746287 -118037266 - AluSp SINE Alu -22 291 1 2002 134 0 3 chr11 32746317 32746641 -118036912 + AluSx SINE Alu 1 323 0 899 176 18 0 chr11 32747114 32747279 -118036274 + MIR SINE MIR 12 179 -83 421 267 0 19 chr11 32747372 32747477 -118036076 + Charlie2 DNA MER1_type 46 148 -2714 738 203 154 45 chr11 32747693 32748004 -118035549 + Charlie2 DNA MER1_type 2274 2618 -244 562 236 60 107 chr11 32748195 32748580 -118034973 + L1MC5 LINE L1 6844 7210 -751 295 229 101 46 chr11 32748744 32748853 -118034700 + L1MC5 LINE L1 7276 7390 -571 386 266 93 66 chr11 32748857 32748909 -118034644 + L1MC5 LINE L1 7474 7523 -438 2047 76 0 15 chr11 32748909 32749173 -118034380 + AluSg SINE Alu 50 309 -1 386 266 93 66 chr11 32749173 32749560 -118033993 + L1MC5 LINE L1 7523 7925 -36 815 214 68 5 chr11 32749570 32749776 -118033777 + Charlie2 DNA MER1_type 2637 2855 -7 185 290 86 21 chr11 32752055 32752148 -118031405 - L2 LINE L2 0 3272 3174 303 274 18 92 chr11 32752340 32752398 -118031155 - L1ME4a LINE L1 -175 5946 5885 700 187 0 8 chr11 32752398 32752532 -118031021 + FLAM_C SINE Alu 1 133 0 303 274 18 92 chr11 32752532 32752637 -118030916 - L1ME4a LINE L1 -236 5885 5795 344 332 85 27 chr11 32752646 32752905 -118030648 - L1ME4a LINE L1 -387 5734 5461 31 44 0 0 chr11 32752933 32752978 -118030575 + AT_rich Low_complexity Low_complexity 1 45 0 25 0 0 0 chr11 32753016 32753041 -118030512 + AT_rich Low_complexity Low_complexity 1 25 0 180 219 0 0 chr11 32755106 32755147 -118028406 - L2 LINE L2 -78 3194 3154 2415 76 0 0 chr11 32756686 32756988 -118026565 + AluSc SINE Alu 1 302 -7 2206 117 0 3 chr11 32758242 32758549 -118025004 - AluSx SINE Alu -6 306 1 21600 23 6 0 chr11 32758937 32762276 -118021277 + L1PA3 LINE L1 2809 6153 -2 191 230 122 138 chr11 32762308 32762504 -118021049 + MIR3 SINE MIR 2 194 -14 237 353 69 0 chr11 32762616 32762718 -118020835 + MIR SINE MIR 117 225 -37 1727 130 59 25 chr11 32763048 32763370 -118020183 - MER44D DNA MER2_type -6 603 1 2190 103 3 3 chr11 32764170 32764461 -118019092 - AluSx SINE Alu -21 291 1 1981 180 44 15 chr11 32766531 32766937 -118016616 + MER47B DNA MER2_type 1 418 0 288 352 94 8 chr11 32767768 32767896 -118015657 + L2 LINE L2 3134 3272 0 22 0 0 0 chr11 32768669 32768691 -118014862 + AT_rich Low_complexity Low_complexity 1 22 0 774 243 153 0 chr11 32768692 32768914 -118014639 - MIR SINE MIR 0 262 7 2229 176 9 40 chr11 32769322 32769694 -118013859 - LOR1b LTR ERV1 0 461 104 1826 176 0 10 chr11 32769694 32770007 -118013546 + AluJb SINE Alu 1 310 -2 2229 176 9 40 chr11 32770007 32770078 -118013475 - LOR1b LTR ERV1 -357 104 32 884 171 30 0 chr11 32770261 32770425 -118013128 + MER33 DNA MER1_type 1 169 -155 315 274 39 67 chr11 32770599 32770778 -118012775 + L1MC5 LINE L1 7461 7634 -327 261 0 0 0 chr11 32771623 32771652 -118011901 + (CCA)n Simple_repeat Simple_repeat 1 29 0 297 239 168 76 chr11 32771744 32771926 -118011627 + MIR SINE MIR 19 206 -56 326 247 51 10 chr11 32773717 32773879 -118009674 + MIR SINE MIR 15 238 -24 782 149 58 0 chr11 32773880 32774034 -118009519 + MER33 DNA MER1_type 15 177 -147 505 234 68 37 chr11 32774034 32774253 -118009300 - L1MCa LINE L1 -5269 1338 906 236 154 19 0 chr11 32774270 32774322 -118009231 + MER33 DNA MER1_type 189 241 -122 2292 107 3 0 chr11 32774495 32774803 -118008750 - AluSq SINE Alu -4 309 1 229 313 16 0 chr11 32775077 32775141 -118008412 + L3 LINE CR1 1502 1566 -11 474 273 41 16 chr11 32775327 32775448 -118008105 - L1ME LINE L1 -578 5586 5463 503 168 142 9 chr11 32775449 32775562 -118007991 - MER20 DNA MER1_type -2 217 90 4273 234 104 18 chr11 32775613 32777307 -118006246 - L1M2 LINE L1 -730 5448 3624 448 296 41 115 chr11 32777310 32777702 -118005851 - HAL1 LINE L1 -2097 410 48 951 177 0 0 chr11 32777712 32777859 -118005694 + FRAM SINE Alu 1 146 -30 431 299 84 57 chr11 32778150 32778518 -118005035 - L2 LINE L2 -1608 1706 1329 2035 123 35 59 chr11 32778627 32779000 -118004553 + THE1B LTR MaLR 1 364 0 229 342 70 32 chr11 32779173 32779360 -118004193 - MIR SINE MIR -40 222 29 310 303 156 8 chr11 32781125 32781247 -118002306 - MIR SINE MIR -28 234 95 281 206 82 27 chr11 32781684 32781757 -118001796 + MIR3 SINE MIR 115 191 -17 1983 166 3 20 chr11 32781810 32782153 -118001400 + MER1B DNA MER1_type 1 337 0 2207 100 0 39 chr11 32782440 32782750 -118000803 - AluSx SINE Alu -14 298 1 705 212 125 5 chr11 32783348 32783532 -118000021 - L1ME2 LINE L1 -9 6155 5950 2128 123 0 7 chr11 32784256 32784557 -117998996 - AluSx SINE Alu -13 299 1 205 277 0 84 chr11 32784711 32784794 -117998759 - L2 LINE L2 0 3313 3238 589 248 143 11 chr11 32784868 32785079 -117998474 + MIR SINE MIR 5 228 -34 3321 217 66 23 chr11 32785318 32786143 -117997410 - MER21B LTR ERV1 0 863 1 216 320 89 76 chr11 32786934 32787159 -117996394 + L2 LINE L2 3037 3264 -8 20692 148 39 8 chr11 32788423 32792743 -117990810 + L1MA3 LINE L1 11 4458 -3107 3331 181 25 17 chr11 32792745 32792798 -117990755 + L1MA3 LINE L1 4868 4919 -2646 2075 129 16 3 chr11 32792798 32793101 -117990452 + AluSx SINE Alu 1 307 -5 2289 106 0 3 chr11 32793106 32793407 -117990146 + AluSc SINE Alu 1 300 -9 3331 181 25 17 chr11 32793407 32794038 -117989515 + L1MA3 LINE L1 4922 5563 -2002 * 5951 114 35 10 chr11 32794034 32795083 -117988470 + L1MA3 LINE L1 6649 7722 -2 452 205 92 76 chr11 32795099 32795284 -117988269 - MER115 DNA AcHobo -1 692 505 537 181 0 0 chr11 32795286 32795380 -117988173 + MLT1A1 LTR MaLR 74 167 -198 944 129 0 0 chr11 32795385 32795517 -117988036 - AluSx SINE Alu -7 305 174 746 140 0 0 chr11 32795517 32795624 -117987929 - AluSx SINE Alu -200 112 6 665 164 242 6 chr11 32795628 32795793 -117987760 + MLT1A1 LTR MaLR 162 365 0 790 178 57 55 chr11 32796072 32796467 -117987086 + MSTD LTR MaLR 1 396 0 24 32 0 0 chr11 32796472 32796503 -117987050 + AT_rich Low_complexity Low_complexity 1 31 0 3101 209 12 5 chr11 32796512 32797153 -117986400 + MER82 DNA MER2_type 7 652 -1 629 291 99 18 chr11 32797301 32797583 -117985970 + L1M4 LINE L1 2906 3210 -2936 3559 121 47 28 chr11 32797610 32798247 -117985306 - L1PA15 LINE L1 -61 6104 5456 23 0 0 0 chr11 32798255 32798278 -117985275 + AT_rich Low_complexity Low_complexity 1 23 0 395 270 52 26 chr11 32798349 32798464 -117985089 - L2 LINE L2 -1 3271 3154 254 361 72 0 chr11 32798472 32798569 -117984984 - MIR SINE MIR -111 151 48 723 319 64 73 chr11 32799305 32799956 -117983597 + L2 LINE L2 2618 3271 -1 2140 118 34 0 chr11 32800482 32800778 -117982775 - AluSg SINE Alu -4 306 1 2296 96 7 0 chr11 32802087 32802388 -117981165 - AluSg SINE Alu -7 303 1 4723 66 5 0 chr11 32802418 32803027 -117980526 - L1PA8 LINE L1 0 6172 5561 5139 94 7 2 chr11 32803028 32803967 -117979586 + L1PA8 LINE L1 4618 5559 -613 182 278 7 20 chr11 32804077 32804228 -117979325 + CT-rich Low_complexity Low_complexity 2 150 0 2664 140 45 25 chr11 32804672 32805187 -117978366 - Tigger3(Golem) DNA MER2_type -1 3028 2504 1530 199 4 7 chr11 32805201 32805482 -117978071 - AluJo SINE Alu -30 282 3 979 203 11 0 chr11 32805504 32805681 -117977872 - Tigger3(Golem) DNA MER2_type -2848 181 3 351 0 0 0 chr11 32805800 32805839 -117977714 + (TG)n Simple_repeat Simple_repeat 2 40 0 4175 173 18 8 chr11 32805887 32806457 -117977096 - LTR39 LTR ERV1 0 783 201 4111 86 9 2 chr11 32806457 32807007 -117976546 - MER41A LTR ERV1 0 554 1 4175 173 18 8 chr11 32807007 32807211 -117976342 - LTR39 LTR ERV1 -582 201 1 2354 92 10 3 chr11 32807742 32808047 -117975506 - AluSx SINE Alu -5 307 1 22 0 0 0 chr11 32808050 32808072 -117975481 + AT_rich Low_complexity Low_complexity 1 22 0 1249 200 91 62 chr11 32808109 32808161 -117975392 - MSTD LTR MaLR 0 396 347 1245 199 92 15 chr11 32808161 32808433 -117975120 - AluJo SINE Alu -17 295 3 1249 200 91 62 chr11 32808433 32808765 -117974788 - MSTD LTR MaLR -49 347 1 1608 171 8 0 chr11 32810128 32810379 -117973174 + AluJb SINE Alu 48 300 -12 207 0 0 0 chr11 32810379 32810402 -117973151 + (TA)n Simple_repeat Simple_repeat 1 23 0 694 238 87 0 chr11 32810920 32811092 -117972461 - MER5A DNA MER1_type -2 187 1 1817 226 116 42 chr11 32811946 32812550 -117971003 - L1ME2 LINE L1 -24 6140 5477 2119 137 3 10 chr11 32812550 32812864 -117970689 - AluSx SINE Alu 0 312 1 1817 226 116 42 chr11 32812864 32812948 -117970605 - L1ME2 LINE L1 -687 5477 5401 306 148 0 0 chr11 32813492 32813546 -117970007 + (CCCCCA)n Simple_repeat Simple_repeat 6 59 0 22 35 0 0 chr11 32816535 32816564 -117966989 + GC_rich Low_complexity Low_complexity 1 29 0 233 101 58 43 chr11 32816724 32816793 -117966760 + (GGGTG)n Simple_repeat Simple_repeat 5 74 0 573 160 0 0 chr11 32816797 32816941 -117966612 + G-rich Low_complexity Low_complexity 1 144 0 242 218 51 13 chr11 32816954 32817032 -117966521 + G-rich Low_complexity Low_complexity 2 82 0 1017 238 143 7 chr11 32818412 32818833 -117964720 - L1ME2 LINE L1 -915 5231 4754 1671 209 55 34 chr11 32819329 32819823 -117963730 - MLT1D LTR MaLR -1 504 1 26 0 0 0 chr11 32820100 32820126 -117963427 + AT_rich Low_complexity Low_complexity 1 26 0 2442 69 0 7 chr11 32821285 32821590 -117961963 - AluY SINE Alu -8 303 1 25 31 0 0 chr11 32822282 32822314 -117961239 + AT_rich Low_complexity Low_complexity 1 32 0 22 56 0 0 chr11 32823191 32823227 -117960326 + AT_rich Low_complexity Low_complexity 1 36 0 273 259 27 45 chr11 32825351 32825463 -117958090 + L3b LINE CR1 1319 1428 -155 264 318 91 19 chr11 32828564 32828718 -117954835 - MIR SINE MIR -49 213 49 29 28 0 0 chr11 32829564 32829600 -117953953 + AT_rich Low_complexity Low_complexity 1 36 0 403 160 40 0 chr11 32831119 32831194 -117952359 - L1ME3A LINE L1 -26 6144 6067 2344 105 0 0 chr11 32831205 32831510 -117952043 - AluSx SINE Alu -7 305 1 26 0 0 0 chr11 32832044 32832070 -117951483 + AT_rich Low_complexity Low_complexity 1 26 0 228 111 0 0 chr11 32832910 32832946 -117950607 + (T)n Simple_repeat Simple_repeat 1 36 0 1518 185 49 51 chr11 32833342 32833731 -117949822 - MLT1B LTR MaLR -2 388 1 22 0 0 0 chr11 32834757 32834779 -117948774 + AT_rich Low_complexity Low_complexity 1 22 0 24 67 0 0 chr11 32835719 32835764 -117947789 + AT_rich Low_complexity Low_complexity 1 45 0 529 138 11 0 chr11 32835802 32835889 -117947664 + FLAM_C SINE Alu 21 108 -35 27 0 0 0 chr11 32835914 32835941 -117947612 + AT_rich Low_complexity Low_complexity 1 27 0 25 0 0 0 chr11 32835982 32836007 -117947546 + AT_rich Low_complexity Low_complexity 1 25 0 30 27 0 0 chr11 32838510 32838547 -117945006 + AT_rich Low_complexity Low_complexity 1 37 0 2094 126 0 0 chr11 32838974 32839268 -117944285 - AluSx SINE Alu -18 294 1 858 132 8 0 chr11 32839277 32839398 -117944155 - AluSq/x SINE Alu -190 122 1 1876 137 22 29 chr11 32839477 32839791 -117943762 + AluSx SINE Alu 1 312 0 527 83 0 48 chr11 32843419 32843503 -117940050 + MADE1 DNA Mariner 1 80 0 346 201 52 52 chr11 32843546 32843700 -117939853 - L1ME3A LINE L1 -2401 5407 5254 2146 113 3 0 chr11 32844386 32844679 -117938874 - AluSx SINE Alu -18 294 1 2206 125 26 6 chr11 32845075 32845427 -117938126 - MER46B DNA MER2_type 0 236 3 22 0 0 0 chr11 32845476 32845498 -117938055 + AT_rich Low_complexity Low_complexity 1 22 0 2839 217 113 11 chr11 32845544 32846637 -117936916 - L1ME1 LINE L1 -4 6231 5032 393 210 107 107 chr11 32846635 32846878 -117936675 - L1ME1 LINE L1 -4194 2202 1960 * 1746 305 126 26 chr11 32846883 32848319 -117935234 - L1ME1 LINE L1 -4781 1615 37 2200 112 0 0 chr11 32848344 32848638 -117934915 - AluSx SINE Alu -18 294 1 232 253 58 11 chr11 32848834 32848921 -117934632 + L1MC/D LINE L1 5687 5777 -2031 27 49 0 0 chr11 32849033 32849074 -117934479 + AT_rich Low_complexity Low_complexity 1 41 0 21 0 0 0 chr11 32849642 32849663 -117933890 + AT_rich Low_complexity Low_complexity 1 21 0 325 293 171 24 chr11 32852008 32852172 -117931381 + MIR SINE MIR 4 191 -71 1606 102 40 0 chr11 32852527 32852753 -117930800 - AluSg/x SINE Alu -2 308 74 484 81 0 0 chr11 32853675 32853737 -117929816 - Alu SINE Alu -15 295 234 180 332 125 61 chr11 32854004 32854380 -117929173 + L2 LINE L2 2341 2740 -574 445 211 29 19 chr11 32854405 32854509 -117929044 - FLAM_C SINE Alu -15 128 24 1186 145 42 10 chr11 32854827 32855020 -117928533 - MER3 DNA MER1_type -1 208 10 209 207 52 35 chr11 32855045 32855103 -117928450 + L2 LINE L2 3214 3272 0 2095 123 3 3 chr11 32855976 32856284 -117927269 + AluSx SINE Alu 3 310 -2 845 231 16 0 chr11 32858907 32859089 -117924464 - MER58A DNA MER1_type -2 222 38 3092 238 75 48 chr11 32859094 32860182 -117923371 - L2 LINE L2 -500 2814 1655 2211 74 0 3 chr11 32860691 32860999 -117922554 - AluSq SINE Alu 0 307 1 503 280 133 18 chr11 32861846 32862071 -117921482 + MIR SINE MIR 3 253 -9 452 127 14 0 chr11 32862212 32862283 -117921270 + L1MA6 LINE L1 6067 6138 -162 778 152 15 0 chr11 32862284 32862416 -117921137 + AluSg/x SINE Alu 166 299 -11 941 164 0 6 chr11 32862416 32862593 -117920960 + L1MA6 LINE L1 6125 6300 0 1824 191 91 9 chr11 32863561 32864012 -117919541 - L1MC4a LINE L1 -223 7585 7098 780 194 61 6 chr11 32864686 32864851 -117918702 + FRAM SINE Alu 1 174 -2 22 0 0 0 chr11 32867440 32867462 -117916091 + AT_rich Low_complexity Low_complexity 1 22 0 880 111 0 0 chr11 32867566 32867683 -117915870 - AluSg/x SINE Alu -21 289 173 1747 157 7 3 chr11 32867828 32868115 -117915438 + AluJb SINE Alu 1 288 -24 396 302 26 0 chr11 32868943 32869059 -117914494 + L2 LINE L2 3192 3310 -3 472 213 120 0 chr11 32869262 32869370 -117914183 + FLAM_C SINE Alu 1 121 -22 2363 125 3 3 chr11 32869427 32869787 -117913766 + MER46B DNA MER2_type 1 235 -1 1802 179 0 3 chr11 32869986 32870288 -117913265 + AluSx SINE Alu 1 301 -11 608 275 57 36 chr11 32870612 32870859 -117912694 + MIR SINE MIR 11 262 0 237 373 49 10 chr11 32871651 32871753 -117911800 + MIR SINE MIR 20 125 -83 21 0 0 0 chr11 32871922 32871943 -117911610 + AT_rich Low_complexity Low_complexity 1 21 0 316 289 48 19 chr11 32872134 32872238 -117911315 - MIR SINE MIR -91 171 65 9789 151 32 13 chr11 32872246 32875013 -117908540 + L1MA5 LINE L1 3488 6300 0 250 146 0 0 chr11 32875114 32875155 -117908398 + L1MC4 LINE L1 6504 6544 -1498 1918 244 183 55 chr11 32875197 32876296 -117907257 + L1MC4 LINE L1 6654 7892 -150 251 259 46 28 chr11 32876370 32876478 -117907075 + L1MC4 LINE L1 7904 8013 -29 808 257 99 37 chr11 32876527 32876799 -117906754 - L2 LINE L2 -1 3312 3024 1424 198 33 16 chr11 32876802 32877105 -117906448 - L1M4 LINE L1 -559 5615 5308 346 278 97 75 chr11 32877175 32877547 -117906006 + L1MEd LINE L1 707 1068 -5051 688 304 45 35 chr11 32877566 32878075 -117905478 + L1MEd LINE L1 1156 1669 -4641 2290 93 6 0 chr11 32878086 32878397 -117905156 + AluSp SINE Alu 1 313 0 4115 123 33 1 chr11 32878536 32879211 -117904342 + L1MA5 LINE L1 5601 6296 -4 384 252 175 26 chr11 32879211 32879400 -117904153 - MER54A LTR ERVL -283 361 147 24 85 0 0 chr11 32879427 32879486 -117904067 + AT_rich Low_complexity Low_complexity 1 59 0 299 398 41 0 chr11 32879489 32879660 -117903893 - L2 LINE L2 -1733 1581 1404 2234 180 62 17 chr11 32879726 32880209 -117903344 - MLT1D LTR MaLR 0 505 1 495 260 110 27 chr11 32880231 32880377 -117903176 + MER5A DNA MER1_type 2 159 -30 325 89 0 54 chr11 32880745 32880801 -117902752 - MIR SINE MIR -55 207 155 1196 78 0 0 chr11 32880805 32880989 -117902564 - AluY SINE Alu 0 313 130 207 0 0 0 chr11 32880989 32881012 -117902541 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2445 52 0 0 chr11 32881014 32881302 -117902251 - AluY SINE Alu -23 288 1 445 310 9 0 chr11 32881312 32881428 -117902125 - MIR SINE MIR -118 144 28 193 167 37 0 chr11 32881780 32881834 -117901719 + (TA)n Simple_repeat Simple_repeat 2 57 0 897 157 88 13 chr11 32882498 32882657 -117900896 + AluJb SINE Alu 129 299 -13 255 259 24 24 chr11 32882833 32882918 -117900635 + MER5A DNA MER1_type 70 154 -35 403 221 0 0 chr11 32883401 32883487 -117900066 - FRAM/FAM SINE Alu -80 86 1 22 0 0 0 chr11 32883954 32883976 -117899577 + AT_rich Low_complexity Low_complexity 1 22 0 21 57 0 0 chr11 32884050 32884085 -117899468 + AT_rich Low_complexity Low_complexity 1 35 0 30 27 0 0 chr11 32884450 32884487 -117899066 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr11 32884775 32884797 -117898756 + AT_rich Low_complexity Low_complexity 1 22 0 773 217 111 1 chr11 32887485 32887675 -117895878 + MER33 DNA MER1_type 1 198 -88 26 30 0 0 chr11 32889472 32889505 -117894048 + AT_rich Low_complexity Low_complexity 1 33 0 2667 257 76 23 chr11 32890176 32891263 -117892290 + L1ME3A LINE L1 5001 6144 -26 1085 268 60 31 chr11 32892238 32892690 -117890863 - L1MC4a LINE L1 -1817 5991 5527 370 304 20 0 chr11 32894193 32894304 -117889249 + MIR SINE MIR 38 151 -57 637 262 86 90 chr11 32894525 32895048 -117888505 + L1ME3A LINE L1 5643 6166 -4 24 67 0 0 chr11 32895048 32895093 -117888460 + AT_rich Low_complexity Low_complexity 1 45 0 2299 67 0 3 chr11 32896823 32897150 -117886403 - AluY SINE Alu 0 326 1 2130 104 0 0 chr11 32898158 32898438 -117885115 + AluSc SINE Alu 14 293 -16 667 244 212 37 chr11 32898691 32899101 -117884452 + MLT1D LTR MaLR 24 505 0 3378 188 35 9 chr11 32899152 32899829 -117883724 + MLT1D-int LTR MaLR 109 803 -568 6513 145 68 31 chr11 32899833 32901054 -117882499 - Tigger1 DNA MER2_type -1152 1266 1 2480 127 3 11 chr11 32901102 32901480 -117882073 - THE1C LTR MaLR 0 375 1 9748 111 29 42 chr11 32901480 32902601 -117880952 - THE1C-int LTR MaLR 0 1580 485 2259 81 3 14 chr11 32902601 32902897 -117880656 - AluY SINE Alu -18 293 1 9748 111 29 42 chr11 32902897 32903376 -117880177 - THE1C-int LTR MaLR -1095 485 1 779 132 0 69 chr11 32903376 32903520 -117880033 - THE1C LTR MaLR 0 375 242 2993 166 56 31 chr11 32903562 32904569 -117878984 + L1MB4 LINE L1 4726 5784 -396 189 0 0 0 chr11 32904569 32904590 -117878963 + (TG)n Simple_repeat Simple_repeat 2 22 0 247 28 0 0 chr11 32904636 32904672 -117878881 - L1PA3 LINE L1 -3 6152 6117 372 209 29 33 chr11 32904690 32905018 -117878535 + (TATAA)n Simple_repeat Simple_repeat 1 326 0 289 182 18 18 chr11 32905018 32905073 -117878480 + Tigger5 DNA MER2_type 1 55 -2268 * 588 171 38 0 chr11 32905065 32905170 -117878383 + Tigger5 DNA MER2_type 2215 2323 0 1236 208 47 52 chr11 32905170 32905405 -117878148 + L1MB4 LINE L1 5791 6025 -155 2264 74 34 3 chr11 32905405 32905702 -117877851 - AluSc SINE Alu -2 307 2 1236 208 47 52 chr11 32905702 32905850 -117877703 + L1MB4 LINE L1 6025 6172 -8 184 272 304 22 chr11 32906278 32906502 -117877051 - L3 LINE CR1 -154 1423 1137 539 269 123 40 chr11 32906616 32906843 -117876710 + MIR SINE MIR 3 248 -14 2156 85 3 3 chr11 32907037 32907349 -117876204 + AluY SINE Alu 1 312 0 920 189 142 13 chr11 32907556 32907789 -117875764 + MER58B DNA MER1_type 78 340 -1 396 0 0 0 chr11 32907892 32907936 -117875617 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 310 290 87 51 chr11 32908197 32908335 -117875218 + HAL1 LINE L1 811 953 -1554 291 93 0 0 chr11 32908539 32908582 -117874971 + (CA)n Simple_repeat Simple_repeat 1 43 0 1090 237 14 0 chr11 32908676 32908891 -117874662 + MER58A DNA MER1_type 1 218 -6 1019 215 5 33 chr11 32908905 32909119 -117874434 - MER3 DNA MER1_type 0 209 2 1500 200 121 6 chr11 32909201 32909556 -117873997 + MSTD LTR MaLR 1 396 0 1858 145 62 0 chr11 32909625 32909744 -117873809 + AluSx SINE Alu 1 111 -201 369 0 0 0 chr11 32909744 32909785 -117873768 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 1858 145 62 0 chr11 32909785 32909955 -117873598 + AluSx SINE Alu 111 308 -4 433 243 88 69 chr11 32911115 32911548 -117872005 + L1M4 LINE L1 2876 3316 -2830 693 264 13 12 chr11 32911571 32911792 -117871761 + L1ME3A LINE L1 11 233 -5837 1151 261 69 19 chr11 32911850 32912739 -117870814 + L1ME3A LINE L1 4746 5826 -278 285 182 171 0 chr11 32912715 32912803 -117870750 + L1MA6 LINE L1 5803 5905 -329 * 239 336 9 0 chr11 32912812 32912919 -117870634 + L1ME3A LINE L1 5862 5969 -135 4372 152 53 30 chr11 32913179 32914020 -117869533 + Tigger2 DNA MER2_type 1858 2718 0 2206 93 0 7 chr11 32914180 32914482 -117869071 - AluY SINE Alu -11 300 1 2293 107 0 0 chr11 32914632 32914941 -117868612 + AluSc SINE Alu 1 309 0 2231 78 0 3 chr11 32914955 32915249 -117868304 + AluY SINE Alu 6 298 -13 1735 154 33 54 chr11 32915484 32915888 -117867665 + L1MA8 LINE L1 5854 6250 -41 1101 84 54 0 chr11 32915964 32916130 -117867423 + L1PA11 LINE L1 6000 6174 0 207 273 55 0 chr11 32919394 32919449 -117864104 + L2 LINE L2 3214 3271 -1 1652 181 10 3 chr11 32922129 32922422 -117861131 + AluJo SINE Alu 1 295 -17 306 73 0 0 chr11 32922946 32922987 -117860566 + (TG)n Simple_repeat Simple_repeat 2 42 0 231 36 0 0 chr11 32922986 32923014 -117860539 + (TA)n Simple_repeat Simple_repeat 1 28 0 * 1436 176 7 62 chr11 32923326 32923616 -117859937 + AluJo SINE Alu 9 282 -30 2141 88 0 10 chr11 32923781 32924078 -117859475 + AluY SINE Alu 1 294 -17 1616 185 14 0 chr11 32924455 32924742 -117858811 - AluJb SINE Alu -19 293 3 1749 131 76 4 chr11 32925141 32925416 -117858137 - AluSx SINE Alu -17 295 1 2095 86 10 14 chr11 32925578 32925870 -117857683 - AluSg SINE Alu -19 291 1 2224 104 3 0 chr11 32926050 32926358 -117857195 - AluSq SINE Alu -4 309 1 23 33 0 0 chr11 32926358 32926388 -117857165 + AT_rich Low_complexity Low_complexity 1 30 0 1872 141 3 53 chr11 32926447 32926567 -117856986 - AluSx SINE Alu -9 303 179 2273 103 0 3 chr11 32926567 32926869 -117856684 + AluSg SINE Alu 1 301 -9 1872 141 3 53 chr11 32926869 32927067 -117856486 - AluSx SINE Alu -133 179 1 2112 100 0 42 chr11 32927487 32927798 -117855755 + AluSx SINE Alu 1 298 -14 210 311 16 0 chr11 32928547 32928608 -117854945 - L3 LINE CR1 -1 1576 1515 680 317 68 28 chr11 32928629 32928954 -117854599 - L3 LINE CR1 -231 1346 1009 429 335 54 34 chr11 32929191 32929430 -117854123 - MIR SINE MIR -14 248 5 883 306 56 16 chr11 32930359 32930791 -117852762 - L1MC4a LINE L1 -1913 5895 5447 1368 192 10 51 chr11 32930812 32931124 -117852429 - AluJo SINE Alu -13 299 1 1027 222 96 20 chr11 32932083 32932575 -117850978 - MLT1E LTR MaLR 0 593 1 1281 148 35 5 chr11 32932737 32932939 -117850614 + AluJb SINE Alu 84 291 -21 896 265 5 0 chr11 32932979 32933168 -117850385 + MER58A DNA MER1_type 35 224 0 609 236 128 12 chr11 32934008 32934197 -117849356 - MIR SINE MIR -10 252 44 683 332 147 51 chr11 32934476 32935959 -117847594 + L2 LINE L2 1336 2961 -353 369 331 93 27 chr11 32936589 32936846 -117846707 - L2 LINE L2 -820 2494 2221 455 96 68 0 chr11 32937010 32937083 -117846470 + Alu SINE Alu 219 296 -15 344 267 35 0 chr11 32937083 32937169 -117846384 + MIR SINE MIR 171 259 -3 201 352 82 15 chr11 32938342 32938538 -117845015 - L2 LINE L2 -1243 2071 1863 840 306 128 10 chr11 32938554 32938953 -117844600 - L3 LINE CR1 -203 1374 929 485 333 140 38 chr11 32939249 32939957 -117843596 - L2 LINE L2 -4 3268 2458 449 223 121 70 chr11 32939962 32940119 -117843434 - MIR SINE MIR -1 261 97 1647 170 46 7 chr11 32940661 32940710 -117842843 - L1PB4 LINE L1 -1 6165 6119 2266 107 0 19 chr11 32940710 32941028 -117842525 - AluSq SINE Alu -1 312 1 1647 170 46 7 chr11 32941028 32941314 -117842239 - L1PB4 LINE L1 -47 6119 5830 2388 59 0 34 chr11 32941318 32941639 -117841914 - AluY SINE Alu -1 310 1 223 312 86 99 chr11 32941639 32941766 -117841787 - L2 LINE L2 -568 2746 2619 2266 46 3 7 chr11 32941766 32942087 -117841466 - AluY SINE Alu 0 320 1 223 312 86 99 chr11 32942087 32942218 -117841335 - L2 LINE L2 -695 2619 2489 240 35 0 0 chr11 32942218 32942247 -117841306 + (TG)n Simple_repeat Simple_repeat 1 29 0 223 312 86 99 chr11 32942247 32942310 -117841243 - L2 LINE L2 -825 2489 2427 23 92 0 0 chr11 32942646 32942711 -117840842 + AT_rich Low_complexity Low_complexity 1 65 0 974 186 67 105 chr11 32943244 32943307 -117840246 - L1ME1 LINE L1 -6 6160 6096 1474 207 0 11 chr11 32943307 32943592 -117839961 - AluJo SINE Alu -25 287 6 974 186 67 105 chr11 32943592 32943872 -117839681 - L1ME1 LINE L1 -70 6096 5830 272 197 16 33 chr11 32943923 32943984 -117839569 - MER2 DNA MER2_type -261 84 25 1308 210 81 73 chr11 32944034 32944293 -117839260 - L1ME1 LINE L1 -335 5831 5576 1895 161 0 0 chr11 32944293 32944601 -117838952 - AluSx SINE Alu 0 310 3 1308 210 81 73 chr11 32944601 32945423 -117838130 - L1ME1 LINE L1 -590 5576 4635 2179 109 143 8 chr11 32945423 32945800 -117837753 - MSTA LTR MaLR 0 428 1 1308 210 81 73 chr11 32945800 32946119 -117837434 - L1ME1 LINE L1 -1531 4635 4320 202 54 27 27 chr11 32946123 32946160 -117837393 + (TATAG)n Simple_repeat Simple_repeat 2 38 0 310 185 27 71 chr11 32946198 32946382 -117837171 + (TATAA)n Simple_repeat Simple_repeat 5 180 0 527 242 51 13 chr11 32946427 32946584 -117836969 - L1ME1 LINE L1 -2001 4145 3983 22 35 0 0 chr11 32946620 32946649 -117836904 + AT_rich Low_complexity Low_complexity 1 29 0 586 247 36 10 chr11 32946657 32946851 -117836702 - L1ME1 LINE L1 -2376 3770 3572 248 290 130 7 chr11 32946895 32947033 -117836520 - L1ME1 LINE L1 -2475 3671 3517 2234 43 43 7 chr11 32947134 32947414 -117836139 + AluY SINE Alu 1 290 -21 800 132 7 29 chr11 32948435 32948571 -117834982 - FLAM_C SINE Alu 0 133 1 21 36 0 0 chr11 32949561 32949589 -117833964 + AT_rich Low_complexity Low_complexity 1 28 0 3676 256 63 66 chr11 32949964 32951266 -117832287 + L1MEc LINE L1 46 1343 -5053 2157 84 0 0 chr11 32951266 32951541 -117832012 - AluY SINE Alu -7 304 30 3676 256 63 66 chr11 32951541 32951962 -117831591 + L1MEc LINE L1 1343 1764 -4632 44064 38 4 1 chr11 32951962 32958096 -117825457 + L1PA3 LINE L1 2 6155 0 451 247 0 45 chr11 32958265 32958326 -117825227 + L1MA10 LINE L1 6188 6250 -84 7657 129 31 6 chr11 32958326 32959594 -117823959 - HSMAR2 DNA Mariner -1 1301 1 451 247 0 45 chr11 32959594 32959686 -117823867 + L1MA10 LINE L1 6250 6334 0 2195 264 169 34 chr11 32959997 32961184 -117822369 + L2 LINE L2 1925 3276 -37 1493 249 41 61 chr11 32961220 32961668 -117821885 + MLT2B1 LTR ERVL 42 481 -39 390 21 0 0 chr11 32961668 32961715 -117821838 + (CA)n Simple_repeat Simple_repeat 1 47 0 1493 249 41 61 chr11 32961715 32961755 -117821798 + MLT2B1 LTR ERVL 481 520 0 3105 131 78 0 chr11 32961773 32962262 -117821291 + MER1A DNA MER1_type 1 527 0 1715 140 24 86 chr11 32962351 32962723 -117820830 - L1MA9 LINE L1 -5 6307 5959 231 350 25 12 chr11 32966516 32966596 -117816957 + MIR SINE MIR 32 112 -150 2218 100 3 10 chr11 32967571 32967872 -117815681 + AluSp SINE Alu 1 299 -14 25 31 0 0 chr11 32967920 32967952 -117815601 + AT_rich Low_complexity Low_complexity 1 32 0 211 265 20 27 chr11 32968583 32968730 -117814823 + (TTATA)n Simple_repeat Simple_repeat 5 150 0 1459 165 56 25 chr11 32968735 32969020 -117814533 + MER7A DNA MER2_type 1 292 -54 2064 128 3 7 chr11 32969416 32969720 -117813833 - AluSq SINE Alu -10 303 1 7179 48 6 0 chr11 32972356 32974008 -117809545 - L1PA5 LINE L1 0 6154 4495 1758 147 4 4 chr11 32974075 32974347 -117809206 + AluSx SINE Alu 24 295 -17 1648 250 66 73 chr11 32974654 32975022 -117808531 - HsTC2a DNA Tc2 -1161 739 377 1465 75 5 16 chr11 32975022 32975209 -117808344 - AluSp SINE Alu -128 185 1 1648 250 66 73 chr11 32975209 32975581 -117807972 - HsTC2a DNA Tc2 -1523 377 4 2359 127 124 5 chr11 32975624 32976042 -117807511 - Tigger1 DNA MER2_type -1 2417 1950 5204 160 34 44 chr11 32976044 32976779 -117806774 + L1PA16 LINE L1 4252 4993 -1173 2321 119 0 0 chr11 32976779 32977091 -117806462 + AluSx SINE Alu 1 312 0 5204 160 34 44 chr11 32977091 32977452 -117806101 + L1PA16 LINE L1 4993 5356 -810 1671 128 97 0 chr11 32977452 32977709 -117805844 + AluSx SINE Alu 8 289 -23 5204 160 34 44 chr11 32977709 32978443 -117805110 + L1PA16 LINE L1 5356 6096 -70 2121 109 0 32 chr11 32978443 32978754 -117804799 - AluSx SINE Alu -11 301 1 5204 160 34 44 chr11 32978754 32978767 -117804786 + L1PA16 LINE L1 6096 6108 -58 2350 101 0 0 chr11 32978767 32979074 -117804479 - AluSg SINE Alu -3 307 1 5204 160 34 44 chr11 32979074 32979145 -117804408 + L1PA16 LINE L1 6108 6164 -2 7605 109 36 3 chr11 32979145 32980300 -117803253 - Tigger1 DNA MER2_type -454 1964 771 195 42 0 0 chr11 32980575 32980599 -117802954 + (TCTA)n Simple_repeat Simple_repeat 1 24 0 1832 141 0 27 chr11 32980694 32980991 -117802562 + AluJo SINE Alu 1 289 -23 573 260 88 11 chr11 32981056 32981237 -117802316 - L1ME1 LINE L1 -12 6154 5960 728 114 0 9 chr11 32981246 32981360 -117802193 - MLT1A2-int LTR MaLR -1258 113 1 1495 240 11 45 chr11 32981360 32981739 -117801814 - MLT1A2 LTR MaLR 0 374 9 342 324 0 0 chr11 32981743 32981845 -117801708 - MLT1A2 LTR MaLR -260 114 13 420 307 0 0 chr11 32981849 32981963 -117801590 - MLT1A2 LTR MaLR -260 114 1 37336 70 5 3 chr11 32982170 32987921 -117795632 + L1PA5 LINE L1 395 6151 -3 201 286 0 0 chr11 32988561 32988624 -117794929 + CT-rich Low_complexity Low_complexity 2 64 0 1430 136 0 26 chr11 32988631 32988859 -117794694 - AluJb SINE Alu -9 303 82 1393 268 157 39 chr11 32988905 32989658 -117793895 - HAL1 LINE L1 -338 2169 1328 1692 183 3 3 chr11 32989703 32990030 -117793523 - AluJb SINE Alu 0 327 1 781 260 91 9 chr11 32990054 32990273 -117793280 + MIR SINE MIR 5 241 -21 614 276 97 31 chr11 32990391 32990710 -117792843 - HAL1 LINE L1 -1417 1090 751 353 328 56 71 chr11 32990822 32991145 -117792408 - HAL1 LINE L1 -1861 646 329 942 184 0 6 chr11 32991415 32991583 -117791970 + AluJo SINE Alu 121 287 -25 703 253 35 5 chr11 32991767 32991965 -117791588 + MER3 DNA MER1_type 2 205 -4 32 26 0 0 chr11 32992159 32992198 -117791355 + AT_rich Low_complexity Low_complexity 1 39 0 23 0 0 0 chr11 32992460 32992483 -117791070 + AT_rich Low_complexity Low_complexity 1 23 0 1803 133 22 0 chr11 32992487 32992801 -117790752 - AluSq SINE Alu 0 320 1 21 0 0 0 chr11 32993405 32993426 -117790127 + AT_rich Low_complexity Low_complexity 1 21 0 1335 158 38 0 chr11 32993789 32993998 -117789555 + AluJo SINE Alu 3 219 -93 242 98 235 0 chr11 32994043 32994094 -117789459 + MER3 DNA MER1_type 147 209 0 * 444 203 0 0 chr11 32994094 32994141 -117789412 - MER3 DNA MER1_type -162 47 1 593 261 100 54 chr11 32994407 32994613 -117788940 + HAL1b LINE L1 344 568 -780 2213 69 7 16 chr11 32994613 32994916 -117788637 - AluY SINE Alu -11 300 1 593 261 100 54 chr11 32994916 32994989 -117788564 + HAL1b LINE L1 568 636 -712 344 253 25 0 chr11 32995080 32995159 -117788394 + L2 LINE L2 3177 3257 -56 846 257 64 55 chr11 32995196 32995683 -117787870 + HAL1b LINE L1 658 1148 -200 323 278 198 0 chr11 32996062 32996224 -117787329 - L1MC4a LINE L1 -1882 5926 5733 408 231 71 101 chr11 32996285 32996523 -117787030 - L1MC4a LINE L1 -529 5633 5403 30 0 0 0 chr11 32996557 32996587 -117786966 + AT_rich Low_complexity Low_complexity 1 30 0 2000 139 0 0 chr11 32996677 32996964 -117786589 + AluSx SINE Alu 1 287 -25 23 54 0 0 chr11 32996964 32997001 -117786552 + AT_rich Low_complexity Low_complexity 1 37 0 234 163 113 62 chr11 32997847 32997927 -117785626 + L2 LINE L2 3121 3204 -109 807 175 34 178 chr11 32997938 32998077 -117785476 + MIR SINE MIR 2 130 -132 377 22 0 0 chr11 32998077 32998123 -117785430 - MADE1 DNA Mariner -34 46 1 807 175 34 178 chr11 32998123 32998230 -117785323 + MIR SINE MIR 130 251 -11 246 261 14 14 chr11 32998255 32998324 -117785229 + L2 LINE L2 3230 3298 -15 3858 189 52 35 chr11 32998362 32998542 -117785011 + L1MB7 LINE L1 4958 5134 -1050 1939 174 97 5 chr11 32998542 32998934 -117784619 - MSTA LTR MaLR 0 428 1 3858 189 52 35 chr11 32998934 32999102 -117784451 + L1MB7 LINE L1 5134 5298 -886 2300 98 3 0 chr11 32999102 32999398 -117784155 + AluY SINE Alu 1 297 -14 3858 189 52 35 chr11 32999398 33000217 -117783336 + L1MB7 LINE L1 5298 6163 -21 1360 143 14 0 chr11 33000236 33000445 -117783108 + AluJo SINE Alu 1 212 -100 354 155 52 0 chr11 33000456 33000572 -117782981 + (TA)n Simple_repeat Simple_repeat 1 122 0 678 280 39 58 chr11 33001099 33001201 -117782352 - MIR SINE MIR -8 254 152 1655 161 40 15 chr11 33001201 33001504 -117782049 - AluJb SINE Alu 0 310 1 678 280 39 58 chr11 33001504 33001656 -117781897 - MIR SINE MIR -110 152 3 2253 77 0 7 chr11 33004081 33004368 -117779185 + AluSg1 SINE Alu 1 285 -24 201 311 54 14 chr11 33004421 33004495 -117779058 + L2 LINE L2 3182 3258 -55 1414 264 91 27 chr11 33004740 33005289 -117778264 + L1MC4a LINE L1 5256 5839 -1969 1850 99 20 0 chr11 33005572 33005824 -117777729 - AluSq SINE Alu -56 257 1 2354 103 0 0 chr11 33005904 33006214 -117777339 - AluSg SINE Alu 0 310 1 1725 188 6 16 chr11 33006458 33006772 -117776781 - AluJb SINE Alu -1 311 1 610 289 171 11 chr11 33006839 33007126 -117776427 + L2 LINE L2 2980 3312 -1 369 0 0 0 chr11 33007444 33007485 -117776068 + (CA)n Simple_repeat Simple_repeat 2 42 0 1679 132 126 26 chr11 33007494 33007835 -117775718 - THE1C LTR MaLR 0 375 1 357 120 0 0 chr11 33007842 33007892 -117775661 - 5S rRNA rRNA -71 50 1 224 283 109 0 chr11 33008601 33008693 -117774860 - MIR SINE MIR -63 199 98 24 53 0 0 chr11 33009363 33009401 -117774152 + AT_rich Low_complexity Low_complexity 1 38 0 26 0 0 0 chr11 33010311 33010337 -117773216 + AT_rich Low_complexity Low_complexity 1 26 0 394 275 58 82 chr11 33012820 33013027 -117770526 - MIR SINE MIR -4 258 57 198 303 15 0 chr11 33013174 33013240 -117770313 + MIR SINE MIR 87 153 -55 363 346 112 5 chr11 33013700 33013888 -117769665 - MIR SINE MIR -35 227 20 24 0 0 0 chr11 33014372 33014396 -117769157 + AT_rich Low_complexity Low_complexity 1 24 0 1581 180 16 74 chr11 33014828 33015206 -117768347 + MLT1A2 LTR MaLR 3 358 -16 745 217 56 123 chr11 33015206 33015597 -117767956 - MLT1A1 LTR MaLR 0 365 1 555 304 8 39 chr11 33015796 33016056 -117767497 - HERVFH21 LTR ERV1 -346 6183 5932 517 31 0 0 chr11 33016050 33016115 -117767438 - HERVFH21 LTR ERV1 -1815 4714 4650 * 6247 185 38 30 chr11 33016119 33017604 -117765949 - HERVFH21 LTR ERV1 -3744 2785 1290 1557 156 3 54 chr11 33017714 33018009 -117765544 + AluJb SINE Alu 17 296 -16 1722 125 45 0 chr11 33018303 33018590 -117764963 - L1PA16 LINE L1 -4 6162 5863 819 269 72 75 chr11 33018762 33019110 -117764443 + L2 LINE L2 2364 2712 -602 937 214 35 0 chr11 33019110 33019311 -117764242 + MER3 DNA MER1_type 2 209 0 819 269 72 75 chr11 33019311 33019445 -117764108 + L2 LINE L2 2712 2845 -469 830 313 79 34 chr11 33019614 33020115 -117763438 - L2 LINE L2 -24 3289 2765 21 0 0 0 chr11 33020115 33020136 -117763417 + AT_rich Low_complexity Low_complexity 1 21 0 228 371 89 5 chr11 33020162 33020364 -117763189 - L2 LINE L2 -1833 1481 1263 189 293 114 49 chr11 33020417 33020540 -117763013 - L2 LINE L2 -2190 1124 994 212 322 28 79 chr11 33020674 33020888 -117762665 - L2 LINE L2 -2654 660 458 292 204 0 97 chr11 33021277 33021370 -117762183 - MER103 DNA DNA -9 157 74 391 211 30 45 chr11 33021521 33021654 -117761899 + HAL1b LINE L1 1200 1330 -18 2136 105 24 7 chr11 33021660 33021954 -117761599 - AluSx SINE Alu -13 299 1 25 31 0 0 chr11 33022081 33022113 -117761440 + AT_rich Low_complexity Low_complexity 1 32 0 2858 213 230 23 chr11 33022156 33023156 -117760397 + L1MC4 LINE L1 6749 8037 -5 184 232 36 36 chr11 33023345 33023401 -117760152 + MIR SINE MIR 206 261 -1 367 285 87 35 chr11 33023862 33024034 -117759519 - MIR SINE MIR -1 261 81 3923 178 62 56 chr11 33024045 33025546 -117758007 + L1MB2 LINE L1 4662 6171 0 3191 182 44 40 chr11 33025693 33026166 -117757387 + L1MB8 LINE L1 5423 5902 -276 1097 218 17 114 chr11 33026166 33026570 -117756983 - MLT1A1 LTR MaLR 0 365 1 3191 182 44 40 chr11 33026570 33026849 -117756704 + L1MB8 LINE L1 5902 6178 0 1091 281 92 16 chr11 33026852 33027275 -117756278 - L2 LINE L2 -1378 1936 1482 1529 194 26 80 chr11 33027302 33027607 -117755946 - MLT1A1 LTR MaLR 0 365 84 1469 106 23 0 chr11 33027607 33027824 -117755729 - L1PA13 LINE L1 0 6163 5942 1529 194 26 80 chr11 33027824 33027904 -117755649 - MLT1A1 LTR MaLR -281 84 1 1722 254 183 29 chr11 33027904 33028621 -117754932 - L2 LINE L2 -1866 1448 622 433 301 6 64 chr11 33029354 33029527 -117754026 - MIR3 SINE MIR -1 207 45 364 325 12 31 chr11 33029822 33029982 -117753571 + MIR SINE MIR 20 176 -86 243 0 0 0 chr11 33031297 33031324 -117752229 + (TA)n Simple_repeat Simple_repeat 1 27 0 22 35 0 0 chr11 33031535 33031564 -117751989 + AT_rich Low_complexity Low_complexity 1 29 0 3590 155 29 7 chr11 33031667 33032138 -117751415 + L1MA8 LINE L1 5164 5657 -634 5528 142 124 9 chr11 33032138 33033242 -117750311 - Tigger3b DNA MER2_type 0 1231 1 3590 155 29 7 chr11 33033242 33033510 -117750043 + L1MA8 LINE L1 5657 5918 -373 21 0 0 0 chr11 33034567 33034588 -117748965 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr11 33035150 33035171 -117748382 + AT_rich Low_complexity Low_complexity 1 21 0 333 0 0 0 chr11 33036370 33036407 -117747146 + (CA)n Simple_repeat Simple_repeat 2 38 0 21 0 0 0 chr11 33037350 33037371 -117746182 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr11 33038164 33038190 -117745363 + AT_rich Low_complexity Low_complexity 1 26 0 2043 131 7 0 chr11 33038268 33038566 -117744987 - AluSx SINE Alu -12 300 1 1602 203 3 16 chr11 33038595 33038911 -117744642 + AluJo SINE Alu 1 312 0 604 165 110 0 chr11 33040380 33040556 -117742997 - L1M3 LINE L1 -717 5453 5255 494 216 108 16 chr11 33040566 33040760 -117742793 - L1M3 LINE L1 -921 5225 5014 182 288 17 17 chr11 33041029 33041088 -117742465 + L2 LINE L2 3214 3272 0 682 175 50 0 chr11 33041244 33041364 -117742189 + FLAM_C SINE Alu 1 126 -17 191 152 22 0 chr11 33041693 33041739 -117741814 + (CTA)n Simple_repeat Simple_repeat 1 47 0 249 292 52 21 chr11 33041740 33041836 -117741717 - MIR SINE MIR -26 236 138 247 341 92 17 chr11 33041927 33042100 -117741453 - MIR SINE MIR -76 186 1 524 254 270 11 chr11 33043236 33043425 -117740128 - MIR SINE MIR -22 240 3 402 197 231 14 chr11 33043527 33043674 -117739879 + MIR SINE MIR 76 254 -8 379 216 0 40 chr11 33044047 33044121 -117739432 - L2 LINE L2 -43 3270 3200 21 0 0 0 chr11 33044312 33044333 -117739220 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr11 33045382 33045410 -117738143 + AT_rich Low_complexity Low_complexity 1 28 0 28 61 0 0 chr11 33048168 33048217 -117735336 + AT_rich Low_complexity Low_complexity 1 49 0 25 0 0 0 chr11 33050710 33050735 -117732818 + AT_rich Low_complexity Low_complexity 1 25 0 25 31 0 0 chr11 33051851 33051883 -117731670 + AT_rich Low_complexity Low_complexity 1 32 0 189 326 23 23 chr11 33056529 33056615 -117726938 - L3 LINE CR1 -533 1044 959 31 44 0 0 chr11 33056661 33056706 -117726847 + AT_rich Low_complexity Low_complexity 1 45 0 235 136 85 0 chr11 33058202 33058261 -117725292 + T-rich Low_complexity Low_complexity 6 69 0 21 0 0 0 chr11 33060540 33060561 -117722992 + AT_rich Low_complexity Low_complexity 1 21 0 208 304 36 0 chr11 33061373 33061429 -117722124 - L2 LINE L2 0 3272 3215 23 68 0 0 chr11 33062001 33062045 -117721508 + AT_rich Low_complexity Low_complexity 1 44 0 552 289 176 47 chr11 33065106 33065469 -117718084 + L2 LINE L2 2896 3305 -8 398 277 97 63 chr11 33065521 33065727 -117717826 - MIR SINE MIR -10 252 40 29 0 0 0 chr11 33065776 33065805 -117717748 + AT_rich Low_complexity Low_complexity 1 29 0 651 303 58 33 chr11 33065807 33066048 -117717505 - MIR SINE MIR -14 248 2 24 53 0 0 chr11 33066998 33067036 -117716517 + AT_rich Low_complexity Low_complexity 1 38 0 2078 121 0 14 chr11 33067645 33067935 -117715618 + AluSx SINE Alu 7 292 -20 21 71 0 0 chr11 33068010 33068052 -117715501 + AT_rich Low_complexity Low_complexity 1 42 0 22 35 0 0 chr11 33068983 33069012 -117714541 + AT_rich Low_complexity Low_complexity 1 29 0 268 313 24 0 chr11 33069474 33069557 -117713996 + L2 LINE L2 3188 3272 0 348 240 176 0 chr11 33070339 33070378 -117713175 + MER58A DNA MER1_type 5 36 -305 198 0 0 0 chr11 33070378 33070400 -117713153 + (TTG)n Simple_repeat Simple_repeat 2 23 0 348 240 176 0 chr11 33070400 33070485 -117713068 + MER58A DNA MER1_type 36 151 -73 225 301 321 5 chr11 33070771 33070980 -117712573 - L3 LINE CR1 -7 1570 1296 26 82 0 0 chr11 33071049 33071110 -117712443 + AT_rich Low_complexity Low_complexity 1 61 0 22 0 0 0 chr11 33071835 33071857 -117711696 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr11 33072433 33072462 -117711091 + AT_rich Low_complexity Low_complexity 1 29 0 189 74 0 0 chr11 33073271 33073298 -117710255 + (TC)n Simple_repeat Simple_repeat 2 28 0 22 0 0 0 chr11 33073547 33073569 -117709984 + AT_rich Low_complexity Low_complexity 1 22 0 2005 134 20 0 chr11 33073588 33073886 -117709667 - AluJb SINE Alu -8 304 1 2069 147 0 0 chr11 33073933 33074240 -117709313 - AluSx SINE Alu -5 307 1 2363 81 0 3 chr11 33074343 33074640 -117708913 + AluSc SINE Alu 1 296 -13 809 147 0 37 chr11 33076415 33076551 -117707002 - FLAM_A SINE Alu -2 131 1 603 0 0 0 chr11 33076603 33076670 -117706883 + (TG)n Simple_repeat Simple_repeat 2 68 0 476 329 57 84 chr11 33076908 33077040 -117706513 + L2 LINE L2 2811 2945 -327 2102 72 59 3 chr11 33077040 33077330 -117706223 - AluSc SINE Alu -3 306 1 476 329 57 84 chr11 33077330 33077671 -117705882 + L2 LINE L2 2945 3271 -1 39 50 0 0 chr11 33078709 33078769 -117704784 + AT_rich Low_complexity Low_complexity 1 60 0 1976 148 10 7 chr11 33080457 33080762 -117702791 + AluJb SINE Alu 1 306 -6 2217 98 3 0 chr11 33080957 33081253 -117702300 - AluSx SINE Alu -3 309 13 1741 160 11 3 chr11 33081261 33081578 -117701975 - AluJo SINE Alu 0 319 1 2409 58 14 0 chr11 33083218 33083510 -117700043 - AluSp SINE Alu -17 296 1 1558 247 136 17 chr11 33083752 33084486 -117699067 + L2 LINE L2 2486 3293 -20 328 306 243 0 chr11 33084618 33084791 -117698762 - MIR SINE MIR -27 235 21 499 138 17 60 chr11 33084866 33084982 -117698571 - Charlie2a DNA MER1_type -42 2820 2710 455 201 243 0 chr11 33084964 33085108 -117698445 - Charlie2a DNA MER1_type -1199 1663 1485 * 269 184 184 71 chr11 33085142 33085240 -117698313 - Charlie2b DNA MER1_type -2114 668 560 * 820 262 71 12 chr11 33085229 33085481 -117698072 - Charlie2b DNA MER1_type -2515 267 1 4977 166 25 73 chr11 33085640 33086114 -117697439 - L1MC1 LINE L1 -6 6607 6112 1656 183 0 14 chr11 33086114 33086404 -117697149 + AluJb SINE Alu 1 286 -26 4977 166 25 73 chr11 33086404 33086441 -117697112 - L1MC1 LINE L1 -501 6112 6075 366 80 0 0 chr11 33086441 33086491 -117697062 + (TG)n Simple_repeat Simple_repeat 1 50 0 4977 166 25 73 chr11 33086491 33087141 -117696412 - L1MC1 LINE L1 -538 6075 5500 1005 212 28 24 chr11 33087218 33087271 -117696282 - L1MC1 LINE L1 -1370 5056 5005 2069 157 37 18 chr11 33087271 33087654 -117695899 - MLT1B LTR MaLR 0 390 1 1005 212 28 24 chr11 33087654 33087850 -117695703 - L1MC1 LINE L1 -1421 5005 4806 1556 203 24 18 chr11 33087853 33088193 -117695360 - L1MC1 LINE L1 -6080 346 5 23 0 0 0 chr11 33088830 33088853 -117694700 + AT_rich Low_complexity Low_complexity 1 23 0 2364 91 3 0 chr11 33089674 33089982 -117693571 - AluSq SINE Alu -4 309 1 250 345 106 62 chr11 33090562 33090788 -117692765 - L2 LINE L2 -32 3240 3005 22 70 0 0 chr11 33090964 33091007 -117692546 + AT_rich Low_complexity Low_complexity 1 43 0 23 0 0 0 chr11 33091330 33091353 -117692200 + AT_rich Low_complexity Low_complexity 1 23 0 1953 140 0 0 chr11 33092170 33092448 -117691105 - AluSx SINE Alu -34 278 1 614 239 27 65 chr11 33092503 33092796 -117690757 + L1M4 LINE L1 4769 5050 -1096 2190 93 3 3 chr11 33093012 33093312 -117690241 + AluSc SINE Alu 1 300 -9 27 29 0 0 chr11 33093556 33093590 -117689963 + AT_rich Low_complexity Low_complexity 1 34 0 2185 95 3 7 chr11 33093592 33093888 -117689665 + AluSc SINE Alu 1 295 -14 23 68 0 0 chr11 33094073 33094117 -117689436 + AT_rich Low_complexity Low_complexity 1 44 0 592 330 208 14 chr11 33094419 33094540 -117689013 - L2 LINE L2 -498 2816 2720 1694 148 42 0 chr11 33094540 33094823 -117688730 + AluJb SINE Alu 1 295 -17 592 330 208 14 chr11 33094823 33094926 -117688627 - L2 LINE L2 -594 2720 2638 219 69 0 0 chr11 33094926 33094955 -117688598 + (CAT)n Simple_repeat Simple_repeat 2 30 0 592 330 208 14 chr11 33094955 33095296 -117688257 - L2 LINE L2 -676 2638 2140 310 243 61 155 chr11 33095306 33095668 -117687885 - L2 LINE L2 -1282 2032 1705 1266 207 67 11 chr11 33097120 33097405 -117686148 + AluJo SINE Alu 2 302 0 620 279 57 0 chr11 33097623 33097781 -117685772 + MIR SINE MIR 3 169 -93 183 100 0 0 chr11 33097781 33097811 -117685742 + (TGG)n Simple_repeat Simple_repeat 2 31 0 380 320 67 28 chr11 33097983 33098161 -117685392 - MIR SINE MIR -52 210 26 25 0 0 0 chr11 33098363 33098388 -117685165 + AT_rich Low_complexity Low_complexity 1 25 0 219 69 0 0 chr11 33098727 33098756 -117684797 + (T)n Simple_repeat Simple_repeat 1 29 0 374 275 56 155 chr11 33100649 33101023 -117682530 + L2 LINE L2 2935 3271 -1 21014 52 3 4 chr11 33101107 33104575 -117678978 - L1PA5 LINE L1 -8 6146 2685 4525 45 2 0 chr11 33104575 33105147 -117678406 + L1P LINE L1 1961 2533 -3613 206 308 87 29 chr11 33105166 33105270 -117678283 + MIR SINE MIR 69 178 -84 25 0 0 0 chr11 33105729 33105754 -117677799 + AT_rich Low_complexity Low_complexity 1 25 0 1961 138 3 0 chr11 33106361 33106651 -117676902 - AluSx SINE Alu -21 291 1 2405 257 67 49 chr11 33106965 33107900 -117675653 + L1MC4 LINE L1 6648 7599 -443 1044 194 38 101 chr11 33107923 33108288 -117675265 + L1MC4 LINE L1 7698 8039 -3 319 204 15 10 chr11 33108325 33108482 -117675071 - MER46C DNA MER2_type -142 196 1 184 100 50 0 chr11 33109640 33109680 -117673873 + (TA)n Simple_repeat Simple_repeat 2 43 0 948 160 21 0 chr11 33110098 33110291 -117673262 + FRAM SINE Alu 1 195 0 942 107 25 97 chr11 33110314 33110510 -117673043 + L1MB3 LINE L1 5991 6172 -11 401 284 29 0 chr11 33110702 33110804 -117672749 + MIR SINE MIR 72 176 -86 209 177 145 0 chr11 33110821 33110883 -117672670 + MIR SINE MIR 150 220 -42 21 0 0 0 chr11 33112019 33112040 -117671513 + AT_rich Low_complexity Low_complexity 1 21 0 2964 34 0 0 chr11 33112229 33112583 -117670970 + L1PA5 LINE L1 5801 6154 0 29 0 0 0 chr11 33112583 33112612 -117670941 + AT_rich Low_complexity Low_complexity 1 29 0 2225 92 7 0 chr11 33112666 33112958 -117670595 + AluSx SINE Alu 4 297 -15 1279 214 106 46 chr11 33113009 33113378 -117670175 - MSTD LTR MaLR 0 396 6 1229 163 50 14 chr11 33113772 33113993 -117669560 - AluJo SINE Alu -1 311 83 24 0 0 0 chr11 33113996 33114020 -117669533 + AT_rich Low_complexity Low_complexity 1 24 0 1229 144 26 18 chr11 33114051 33114280 -117669273 - L1MA5A LINE L1 -4 6293 6063 709 191 0 8 chr11 33114281 33114407 -117669146 + FLAM_C SINE Alu 1 125 -18 361 121 35 75 chr11 33114412 33114585 -117668968 + (TTTAA)n Simple_repeat Simple_repeat 5 170 0 3328 120 24 13 chr11 33114597 33115139 -117668414 - L1MA5A LINE L1 -219 6078 5531 1814 189 134 24 chr11 33115532 33115986 -117667567 - MLT1D LTR MaLR 0 505 2 629 299 39 34 chr11 33117504 33117711 -117665842 + MIR SINE MIR 47 254 -8 23 54 0 0 chr11 33117786 33117823 -117665730 + AT_rich Low_complexity Low_complexity 1 37 0 527 280 109 35 chr11 33117846 33118103 -117665450 + L2 LINE L2 3038 3313 0 2094 135 0 0 chr11 33118276 33118573 -117664980 + AluSx SINE Alu 1 297 -15 199 315 68 0 chr11 33118853 33118926 -117664627 - L2 LINE L2 -642 2672 2595 296 187 22 44 chr11 33121680 33121771 -117661782 - L1MC5 LINE L1 -29 7932 7844 1722 215 95 50 chr11 33122476 33122959 -117660594 - MLT1D LTR MaLR 0 505 1 318 270 70 43 chr11 33123225 33123410 -117660143 - MIR SINE MIR 0 262 73 217 353 92 17 chr11 33123465 33123584 -117659969 - L2 LINE L2 -6 3266 3139 479 241 241 10 chr11 33123595 33123794 -117659759 + MIR SINE MIR 6 250 -12 1683 177 7 3 chr11 33123943 33124246 -117659307 - AluJo SINE Alu 0 304 1 574 207 250 5 chr11 33124276 33124484 -117659069 + MIR SINE MIR 2 260 -2 208 367 117 8 chr11 33124623 33124743 -117658810 - L2 LINE L2 -7 3265 3133 1424 207 83 5 chr11 33125101 33125407 -117658146 + Charlie4a DNA MER1_type 17 362 -1599 2187 121 0 0 chr11 33125407 33125704 -117657849 + AluSg SINE Alu 1 297 -13 1424 207 83 5 chr11 33125704 33125793 -117657760 + Charlie4a DNA MER1_type 362 443 -65 354 256 33 0 chr11 33125809 33125899 -117657654 - L3 LINE CR1 -572 1005 913 723 134 0 0 chr11 33125918 33126030 -117657523 - FLAM_C SINE Alu -31 112 1 1490 266 85 39 chr11 33126320 33126910 -117656643 - MLT1G LTR MaLR 0 590 11 1881 140 23 13 chr11 33126912 33127219 -117656334 + AluJb SINE Alu 3 312 0 238 185 19 0 chr11 33127589 33127643 -117655910 + L1MB7 LINE L1 6130 6184 0 623 195 16 0 chr11 33130476 33130599 -117652954 - MER45C DNA AcHobo -7 946 822 405 39 0 0 chr11 33130599 33130650 -117652903 + (TC)n Simple_repeat Simple_repeat 2 52 0 2276 281 67 33 chr11 33130650 33131437 -117652116 - MER45C DNA AcHobo -105 848 35 649 216 164 0 chr11 33131508 33131679 -117651874 - MIR SINE MIR -32 230 32 204 270 0 0 chr11 33132023 33132060 -117651493 - MIR SINE MIR -111 97 61 226 222 0 0 chr11 33134634 33134679 -117648874 - MER103 DNA DNA -120 46 2 21 0 0 0 chr11 33134931 33134952 -117648601 + AT_rich Low_complexity Low_complexity 1 21 0 237 281 47 0 chr11 33135684 33135748 -117647805 - MIR SINE MIR -75 133 67 696 294 15 5 chr11 33137876 33138080 -117645473 + L1M3d LINE L1 414 619 -5684 1445 193 120 25 chr11 33138104 33138430 -117645123 - MLT1A1 LTR MaLR 0 365 9 487 317 116 48 chr11 33138433 33138831 -117644722 + L1M3d LINE L1 654 1078 -5225 4158 225 114 14 chr11 33138975 33139501 -117644052 + L1MB1 LINE L1 778 1250 -5132 306 0 0 0 chr11 33139501 33139535 -117644018 + (TG)n Simple_repeat Simple_repeat 2 35 0 4158 225 114 14 chr11 33139535 33141131 -117642422 + L1MB1 LINE L1 1250 3010 -3372 2190 120 0 3 chr11 33141131 33141440 -117642113 + AluSx SINE Alu 5 312 0 8256 182 17 21 chr11 33141440 33143326 -117640227 + L1MB1 LINE L1 3526 5403 -979 11120 35 5 1 chr11 33143326 33145428 -117638125 + L1PA4 LINE L1 4058 6168 0 4447 145 75 25 chr11 33145431 33146047 -117637506 + L1MB1 LINE L1 5394 5978 -426 1753 148 9 72 chr11 33146047 33146379 -117637174 + AluJo SINE Alu 1 311 -1 1562 191 0 23 chr11 33146385 33146689 -117636864 + AluJb SINE Alu 1 297 -15 4447 145 75 25 chr11 33146689 33147022 -117636531 + L1MB1 LINE L1 5982 6399 -5 44861 32 3 2 chr11 33148687 33154827 -117628726 + L1PA4 LINE L1 1 6147 -8 26 50 0 0 chr11 33154827 33154867 -117628686 + AT_rich Low_complexity Low_complexity 1 40 0 267 54 0 0 chr11 33154967 33155004 -117628549 + (TG)n Simple_repeat Simple_repeat 2 38 0 2330 107 0 0 chr11 33156177 33156476 -117627077 - AluSx SINE Alu -11 301 3 771 173 0 0 chr11 33156655 33156788 -117626765 + FLAM_C SINE Alu 1 133 0 2410 59 0 29 chr11 33157790 33158097 -117625456 - AluY SINE Alu -13 298 1 187 256 240 33 chr11 33158814 33158935 -117624618 - L3b LINE CR1 -55 1528 1383 181 364 26 0 chr11 33158948 33159025 -117624528 - L3b LINE CR1 -4 1579 1501 249 235 0 0 chr11 33159489 33159540 -117624013 + L2 LINE L2 3262 3312 -1 304 289 191 16 chr11 33159575 33159831 -117623722 + L2 LINE L2 2243 2543 -771 317 360 67 0 chr11 33159919 33160083 -117623470 + L1ME LINE L1 3599 3773 -2373 277 303 27 65 chr11 33160338 33160486 -117623067 + L1ME LINE L1 4036 4177 -1969 2621 46 0 0 chr11 33160486 33160789 -117622764 + AluY SINE Alu 1 303 -8 277 303 27 65 chr11 33160789 33160825 -117622728 + L1ME LINE L1 4177 4213 -1933 192 250 0 0 chr11 33160908 33160952 -117622601 + MIR SINE MIR 100 143 -119 607 281 84 34 chr11 33161103 33161341 -117622212 + L2 LINE L2 2712 2961 -353 487 286 50 44 chr11 33161341 33161638 -117621915 + L1ME LINE L1 5413 5711 -451 758 279 122 44 chr11 33162004 33162521 -117621032 + L2 LINE L2 2533 3086 -227 2212 106 0 3 chr11 33162522 33162814 -117620739 + AluSx SINE Alu 1 291 -21 2840 220 139 26 chr11 33162824 33163733 -117619820 + L1MC4a LINE L1 6642 7652 -156 220 250 0 0 chr11 33163777 33163833 -117619720 + L2 LINE L2 2459 2514 -800 433 278 169 75 chr11 33164064 33164413 -117619140 + L2 LINE L2 2594 2975 -339 241 215 92 0 chr11 33164547 33164612 -117618941 + L2 LINE L2 3242 3312 -1 1461 169 12 4 chr11 33166604 33166846 -117616707 - AluJb SINE Alu -14 298 55 2125 127 13 3 chr11 33167628 33167935 -117615618 - AluSx SINE Alu 0 312 3 1694 121 98 4 chr11 33169021 33169285 -117614268 + AluJo SINE Alu 8 296 -16 30 27 0 0 chr11 33170366 33170403 -117613150 + AT_rich Low_complexity Low_complexity 1 37 0 23 33 0 0 chr11 33170638 33170668 -117612885 + AT_rich Low_complexity Low_complexity 1 30 0 27 29 0 0 chr11 33174627 33174661 -117608892 + AT_rich Low_complexity Low_complexity 1 34 0 1126 125 83 6 chr11 33178578 33178746 -117604807 + AluJo SINE Alu 12 192 -120 262 304 0 0 chr11 33178763 33178832 -117604721 + GA-rich Low_complexity Low_complexity 3 71 0 620 271 77 106 chr11 33179344 33179631 -117603922 + L2 LINE L2 2705 2999 -314 2337 71 0 10 chr11 33179631 33179927 -117603626 + AluY SINE Alu 1 293 -18 620 271 77 106 chr11 33179927 33180046 -117603507 + L2 LINE L2 2999 3120 -193 1814 137 26 26 chr11 33180046 33180353 -117603200 - AluSx SINE Alu -5 307 1 620 271 77 106 chr11 33180353 33180527 -117603026 + L2 LINE L2 3120 3278 -35 537 304 83 20 chr11 33180561 33180765 -117602788 - MLT1J LTR MaLR -294 217 1 1732 154 25 0 chr11 33181835 33182114 -117601439 + AluJb SINE Alu 5 290 -22 717 287 31 12 chr11 33182741 33182999 -117600554 - MLT1J LTR MaLR -10 501 239 1733 275 145 31 chr11 33183001 33183490 -117600063 - MER115 DNA AcHobo -1 692 117 1569 191 0 53 chr11 33183490 33183618 -117599935 + AluJb SINE Alu 5 138 -174 2197 133 0 0 chr11 33183618 33183918 -117599635 + AluSg SINE Alu 1 300 -10 1569 191 0 53 chr11 33183918 33184109 -117599444 + AluJb SINE Alu 138 307 -5 1733 275 145 31 chr11 33184109 33184234 -117599319 - MER115 DNA AcHobo -576 117 8 622 321 25 8 chr11 33184241 33184481 -117599072 - MLT1J LTR MaLR -267 244 1 235 234 9 37 chr11 33184998 33185105 -117598448 + (TATAA)n Simple_repeat Simple_repeat 5 108 0 602 184 190 19 chr11 33185460 33185618 -117597935 + MLT1J LTR MaLR 15 199 -312 252 282 42 0 chr11 33185716 33185787 -117597766 + MLT1J LTR MaLR 389 462 -49 380 321 48 12 chr11 33186536 33186701 -117596852 - MIR SINE MIR -70 192 22 578 150 92 58 chr11 33186825 33186945 -117596608 - FLAM_C SINE Alu -18 125 2 180 0 0 0 chr11 33187778 33187798 -117595755 + (CAGC)n Simple_repeat Simple_repeat 1 20 0 2276 110 3 0 chr11 33189422 33189730 -117593823 - AluSc SINE Alu 0 309 1 26 50 0 0 chr11 33190077 33190117 -117593436 + AT_rich Low_complexity Low_complexity 1 40 0 24 0 0 0 chr11 33191667 33191691 -117591862 + AT_rich Low_complexity Low_complexity 1 24 0 24 77 0 0 chr11 33194928 33194980 -117588573 + AT_rich Low_complexity Low_complexity 1 52 0 213 121 0 0 chr11 33197836 33197869 -117585684 + (T)n Simple_repeat Simple_repeat 1 33 0 207 0 0 0 chr11 33198031 33198054 -117585499 + (A)n Simple_repeat Simple_repeat 1 23 0 635 0 13 0 chr11 33202338 33202413 -117581140 + (CA)n Simple_repeat Simple_repeat 2 77 0 198 0 0 0 chr11 33205441 33205463 -117578090 + (A)n Simple_repeat Simple_repeat 1 22 0 282 29 0 0 chr11 33205917 33205952 -117577601 + (GA)n Simple_repeat Simple_repeat 1 35 0 229 341 0 0 chr11 33210453 33210541 -117573012 + G-rich Low_complexity Low_complexity 1 88 0 368 219 7 22 chr11 33210782 33210919 -117572634 + GA-rich Low_complexity Low_complexity 3 137 0 222 37 0 0 chr11 33211942 33211969 -117571584 + (TCTCC)n Simple_repeat Simple_repeat 5 31 0 22 80 0 0 chr11 33213072 33213122 -117570431 + GC_rich Low_complexity Low_complexity 1 50 0 201 133 0 0 chr11 33217348 33217378 -117566175 + (GAAA)n Simple_repeat Simple_repeat 3 32 0 216 220 0 40 chr11 33218658 33218708 -117564845 + G-rich Low_complexity Low_complexity 1 48 0 24 0 0 0 chr11 33219657 33219681 -117563872 + GC_rich Low_complexity Low_complexity 1 24 0 351 0 0 0 chr11 33220236 33220275 -117563278 + (TG)n Simple_repeat Simple_repeat 2 40 0 21 0 0 0 chr11 33221313 33221334 -117562219 + GC_rich Low_complexity Low_complexity 1 21 0 425 50 17 0 chr11 33222924 33222984 -117560569 + (TC)n Simple_repeat Simple_repeat 2 62 0 30 45 0 0 chr11 33225694 33225738 -117557815 + GC_rich Low_complexity Low_complexity 1 44 0 218 262 0 16 chr11 33226065 33226126 -117557427 + (GCCTG)n Simple_repeat Simple_repeat 5 64 0 306 148 0 0 chr11 33227311 33227365 -117556188 + (TGGGGG)n Simple_repeat Simple_repeat 6 59 0 320 0 25 0 chr11 33229542 33229582 -117553971 + (CAAA)n Simple_repeat Simple_repeat 4 44 0 25 31 0 0 chr11 33235164 33235196 -117548357 + GC_rich Low_complexity Low_complexity 1 32 0 360 43 0 0 chr11 33236639 33236685 -117546868 + (TTTTA)n Simple_repeat Simple_repeat 1 46 0 1208 68 12 0 chr11 33236685 33236846 -117546707 - L1PA3 LINE L1 -24 6131 5969 216 0 0 0 chr11 33237647 33237671 -117545882 + (T)n Simple_repeat Simple_repeat 1 24 0 201 287 89 59 chr11 33238533 33238634 -117544919 + L3 LINE CR1 1367 1470 -107 24 0 0 0 chr11 33238743 33238767 -117544786 + AT_rich Low_complexity Low_complexity 1 24 0 188 325 0 36 chr11 33238938 33239021 -117544532 + MER5A DNA MER1_type 86 165 -24 300 234 8 109 chr11 33239164 33239292 -117544261 - MIR SINE MIR -88 174 60 1724 158 32 14 chr11 33239591 33239869 -117543684 - AluJb SINE Alu -29 283 1 570 274 75 53 chr11 33240009 33240367 -117543186 - MLT1J2 LTR MaLR 0 450 85 4502 261 187 20 chr11 33240454 33242501 -117541052 - L2 LINE L2 -680 2634 247 489 141 0 0 chr11 33242716 33242801 -117540752 + (TCCC)n Simple_repeat Simple_repeat 4 88 0 234 62 0 0 chr11 33242801 33242833 -117540720 + (CA)n Simple_repeat Simple_repeat 1 32 0 747 266 101 19 chr11 33243146 33243506 -117540047 - L1MC/D LINE L1 -299 5822 5483 280 183 0 85 chr11 33243582 33243682 -117539871 + 7SK RNA RNA 32 124 -69 329 253 56 56 chr11 33244378 33244540 -117539013 - HAL1b LINE L1 0 1348 1187 364 292 0 26 chr11 33244633 33244746 -117538807 - L1MC/D LINE L1 -2010 5798 5689 281 83 0 0 chr11 33244808 33244844 -117538709 - tRNA-Gly-GGC tRNA tRNA -38 36 1 2398 90 0 3 chr11 33245066 33245376 -117538177 - AluSc SINE Alu 0 309 1 21 57 0 0 chr11 33245498 33245533 -117538020 + AT_rich Low_complexity Low_complexity 1 35 0 279 0 0 0 chr11 33246381 33246412 -117537141 + (CA)n Simple_repeat Simple_repeat 2 32 0 23 54 0 0 chr11 33246707 33246744 -117536809 + AT_rich Low_complexity Low_complexity 1 37 0 264 30 0 0 chr11 33246908 33246941 -117536612 + (CA)n Simple_repeat Simple_repeat 1 33 0 402 232 323 24 chr11 33246968 33247222 -117536331 - L1MC4a LINE L1 -1895 5913 5584 2251 102 0 0 chr11 33247579 33247863 -117535690 + AluSx SINE Alu 9 292 -20 269 163 0 0 chr11 33247865 33247914 -117535639 + MER116 DNA Mariner 15 63 -17 374 278 0 9 chr11 33248729 33248837 -117534716 - L1ME LINE L1 -298 5823 5717 624 11 11 23 chr11 33248893 33248980 -117534573 + (TTTC)n Simple_repeat Simple_repeat 2 87 0 1757 174 0 4 chr11 33248980 33249261 -117534292 - AluJb SINE Alu -32 280 1 2265 92 10 0 chr11 33250298 33250591 -117532962 - AluSg SINE Alu -14 296 1 509 300 131 31 chr11 33250699 33251192 -117532361 + L2 LINE L2 2729 3272 0 2518 206 55 12 chr11 33251258 33251825 -117531728 - L1MD3 LINE L1 -1 7994 7404 621 230 0 8 chr11 33251825 33251951 -117531602 - MLT1F1 LTR MaLR -442 125 1 534 210 24 24 chr11 33251957 33252081 -117531472 - L1MD3 LINE L1 -729 7266 7143 1985 153 7 10 chr11 33252145 33252453 -117531100 - AluJo SINE Alu -5 307 1 1476 138 37 0 chr11 33253790 33254058 -117529495 + L1MA8 LINE L1 6010 6287 -4 1934 138 29 0 chr11 33254139 33254442 -117529111 + AluSx SINE Alu 1 311 0 291 216 57 12 chr11 33254584 33254683 -117528870 - MIR SINE MIR -40 168 61 2331 105 3 0 chr11 33255335 33255629 -117527924 + AluSp SINE Alu 1 295 -18 467 248 168 0 chr11 33257741 33257878 -117525675 - MIR SINE MIR -56 206 47 388 178 0 69 chr11 33258032 33258133 -117525420 + LTR41 LTR ERVL 671 764 -9 194 320 64 0 chr11 33258192 33258270 -117525283 + MIR SINE MIR 52 134 -128 858 178 6 29 chr11 33258416 33258590 -117524963 + FRAM SINE Alu 1 170 -6 2019 126 10 7 chr11 33258776 33259078 -117524475 - AluSx SINE Alu -9 303 1 629 326 19 8 chr11 33259672 33259930 -117523623 + MIR SINE MIR 1 261 -1 534 129 89 0 chr11 33260091 33260192 -117523361 - L1MD3 LINE L1 0 7995 7886 184 261 284 11 chr11 33260799 33260887 -117522666 - MER5B DNA MER1_type 0 178 67 249 191 0 0 chr11 33260935 33260982 -117522571 - MER5B DNA MER1_type -131 47 1 25 0 0 0 chr11 33261288 33261313 -117522240 + AT_rich Low_complexity Low_complexity 1 25 0 367 270 85 69 chr11 33262649 33262699 -117520854 - MIR SINE MIR -54 208 160 1646 216 86 25 chr11 33262699 33262868 -117520685 + MLT1D LTR MaLR 1 158 -347 2246 117 3 0 chr11 33262868 33263167 -117520386 + AluSp SINE Alu 1 300 -13 1646 216 86 25 chr11 33263167 33263473 -117520080 + MLT1D LTR MaLR 158 505 0 367 270 85 69 chr11 33263473 33263611 -117519942 - MIR SINE MIR -102 160 17 2226 187 3 3 chr11 33263821 33264185 -117519368 + MLT1A1 LTR MaLR 1 364 -1 301 242 0 0 chr11 33265232 33265298 -117518255 + L2 LINE L2 3248 3313 0 1843 161 57 29 chr11 33265770 33266119 -117517434 + MLT1A1 LTR MaLR 1 359 -6 217 323 101 42 chr11 33266320 33266537 -117517016 + L2 LINE L2 2829 3058 -214 346 267 137 0 chr11 33266882 33267013 -117516540 + LTR67 LTR ERVL 408 556 -1 657 47 0 0 chr11 33267032 33267117 -117516436 + (TA)n Simple_repeat Simple_repeat 1 85 0 2301 103 0 0 chr11 33267117 33267408 -117516145 - AluSx SINE Alu -10 302 12 346 295 69 40 chr11 33268599 33268772 -117514781 - MER5B DNA MER1_type 0 178 1 361 205 8 4 chr11 33269970 33270107 -117513446 + MER53 DNA DNA 3 189 0 914 276 161 27 chr11 33270224 33270573 -117512980 + MLT1J LTR MaLR 4 417 -94 1825 143 58 36 chr11 33270573 33270936 -117512617 + THE1C LTR MaLR 5 375 0 914 276 161 27 chr11 33270936 33270995 -117512558 + MLT1J LTR MaLR 417 467 -44 1987 136 14 3 chr11 33271009 33271304 -117512249 - AluJb SINE Alu -14 298 1 353 296 40 45 chr11 33271520 33271696 -117511857 - MER5A DNA MER1_type -1 188 14 209 260 55 14 chr11 33272630 33272703 -117510850 - L2 LINE L2 -57 3256 3181 1751 145 21 18 chr11 33272789 33273071 -117510482 + AluJo SINE Alu 1 283 -29 372 285 107 19 chr11 33273330 33273600 -117509953 - L2 LINE L2 -415 2899 2606 218 69 0 69 chr11 33274304 33274362 -117509191 + (TA)n Simple_repeat Simple_repeat 1 54 0 208 214 0 0 chr11 33274550 33274592 -117508961 - MIR SINE MIR -151 111 70 2047 222 110 42 chr11 33274953 33275317 -117508236 - MLT1G LTR MaLR 0 590 175 2002 131 3 3 chr11 33275317 33275607 -117507946 + AluSx SINE Alu 1 290 -22 2047 222 110 42 chr11 33275607 33275786 -117507767 - MLT1G LTR MaLR -415 175 10 264 266 118 70 chr11 33275962 33276191 -117507362 - HAL1b LINE L1 0 1348 1109 2122 128 16 3 chr11 33276257 33276563 -117506990 - AluSg SINE Alu 0 310 1 273 226 0 0 chr11 33276647 33276700 -117506853 - AluJo SINE Alu 0 308 256 1068 181 0 40 chr11 33276701 33276900 -117506653 - AluJo SINE Alu -116 196 6 416 234 84 84 chr11 33276908 33277135 -117506418 + MLT1L LTR MaLR 41 267 -348 376 67 217 0 chr11 33277185 33277245 -117506308 - MADE1 DNA Mariner 0 80 8 226 158 73 110 chr11 33277325 33277407 -117506146 + MLT1L LTR MaLR 533 611 -4 266 219 19 95 chr11 33277453 33277558 -117505995 - L1ME LINE L1 -320 5801 5705 407 298 185 0 chr11 33277750 33277955 -117505598 + MIR SINE MIR 20 262 0 1399 146 32 4 chr11 33278089 33278148 -117505405 - L1MD3 LINE L1 -10 7985 7929 2109 129 7 3 chr11 33278148 33278451 -117505102 + AluSx SINE Alu 1 304 -8 1399 146 32 4 chr11 33278451 33278637 -117504916 - L1MD3 LINE L1 -66 7929 7733 359 257 125 0 chr11 33278744 33278880 -117504673 - MIR SINE MIR -75 187 35 180 329 0 14 chr11 33279631 33279701 -117503852 - MIR SINE MIR -166 96 28 465 252 98 0 chr11 33280318 33280461 -117503092 - MIR SINE MIR -10 252 96 277 312 0 21 chr11 33280461 33280554 -117502999 + MER39 LTR ERV1 1 91 -616 354 235 0 0 chr11 33280556 33280637 -117502916 - MIR SINE MIR -170 92 12 295 320 56 8 chr11 33280980 33281105 -117502448 - L2 LINE L2 0 3272 3142 204 289 19 0 chr11 33281161 33281213 -117502340 + L2 LINE L2 3129 3181 -91 2242 105 23 0 chr11 33281431 33281735 -117501818 + AluSx SINE Alu 2 312 0 203 329 0 0 chr11 33281745 33281827 -117501726 - L2 LINE L2 -295 2977 2896 446 305 119 11 chr11 33282078 33282255 -117501298 - MIR SINE MIR -47 215 20 206 211 44 105 chr11 33282308 33282422 -117501131 - MIR SINE MIR -50 212 106 443 296 136 10 chr11 33283242 33283448 -117500105 - MIR SINE MIR -16 246 15 806 172 106 50 chr11 33283562 33283760 -117499793 + MER3 DNA MER1_type 1 209 0 195 42 0 0 chr11 33284445 33284469 -117499084 + (CTG)n Simple_repeat Simple_repeat 2 25 0 231 88 0 0 chr11 33284471 33284505 -117499048 + (TG)n Simple_repeat Simple_repeat 1 34 0 288 186 0 0 chr11 33284644 33284703 -117498850 + GA-rich Low_complexity Low_complexity 2 60 0 580 225 11 53 chr11 33284716 33284903 -117498650 - MIR SINE MIR 0 262 84 345 262 104 106 chr11 33285501 33286012 -117497541 - L1ME4a LINE L1 -15 6106 5597 665 244 76 36 chr11 33286257 33286496 -117497057 + MIR SINE MIR 8 260 -2 299 255 0 49 chr11 33286839 33286941 -117496612 - MIR SINE MIR -129 133 37 825 154 171 6 chr11 33287012 33287187 -117496366 + MER3 DNA MER1_type 2 205 -4 2122 127 0 3 chr11 33287244 33287543 -117496010 - AluSg SINE Alu -12 298 1 21 36 0 0 chr11 33287572 33287600 -117495953 + AT_rich Low_complexity Low_complexity 1 28 0 297 0 0 0 chr11 33287644 33287677 -117495876 + (TAA)n Simple_repeat Simple_repeat 2 34 0 256 326 36 88 chr11 33287986 33288179 -117495374 + L3 LINE CR1 1378 1560 -17 196 362 67 9 chr11 33288261 33288366 -117495187 + L2 LINE L2 3151 3261 -11 379 293 77 17 chr11 33288553 33288734 -117494819 - MIR SINE MIR -6 256 65 204 40 0 0 chr11 33289035 33289060 -117494493 + (TC)n Simple_repeat Simple_repeat 2 26 0 2370 89 0 10 chr11 33289060 33289362 -117494191 - AluY SINE Alu -12 299 1 529 272 113 5 chr11 33289459 33289654 -117493899 - MLT1K LTR MaLR 0 588 373 612 256 101 12 chr11 33289729 33289897 -117493656 - MER119 DNA MER1_type -396 187 5 366 328 37 0 chr11 33289990 33290124 -117493429 + MIR SINE MIR 53 191 -71 1449 225 95 27 chr11 33290244 33290688 -117492865 - MLT1J LTR MaLR 0 511 38 1509 199 24 0 chr11 33291398 33291694 -117491859 + L1MC1 LINE L1 6009 6311 -22 808 175 18 30 chr11 33292150 33292316 -117491237 + MER3 DNA MER1_type 6 122 -87 374 184 26 0 chr11 33292330 33292406 -117491147 + MER3 DNA MER1_type 128 205 -4 263 258 0 16 chr11 33292368 33292430 -117491123 - MER3 DNA MER1_type -120 89 29 * 27 0 0 0 chr11 33292994 33293021 -117490532 + AT_rich Low_complexity Low_complexity 1 27 0 491 241 53 0 chr11 33293122 33293255 -117490298 + MER103 DNA DNA 8 147 -19 1684 134 18 33 chr11 33294368 33294643 -117488910 + MER1B DNA MER1_type 1 271 -68 1898 114 0 0 chr11 33295363 33295618 -117487935 + AluSc SINE Alu 50 304 -5 255 296 34 62 chr11 33295712 33295888 -117487665 - MIR SINE MIR -72 190 20 284 327 7 47 chr11 33295929 33296079 -117487474 + MIR SINE MIR 59 202 -60 1012 230 18 51 chr11 33296862 33297161 -117486392 - L1MD3 LINE L1 0 8037 7768 995 227 4 48 chr11 33297182 33297244 -117486309 - MER58A DNA MER1_type -2196 224 161 1491 113 45 5 chr11 33297244 33297465 -117486088 + MER30 DNA MER1_type 1 230 0 995 227 4 48 chr11 33297465 33297631 -117485922 - MER58A DNA MER1_type -2259 161 6 916 201 19 48 chr11 33297643 33297664 -117485889 - L1MC4 LINE L1 -455 7587 7567 1591 147 34 101 chr11 33297664 33297828 -117485725 - AluJo SINE Alu -7 305 132 1880 133 13 47 chr11 33297828 33298145 -117485408 - AluSx SINE Alu -6 306 1 1591 147 34 101 chr11 33298145 33298189 -117485364 - AluJo SINE Alu -180 132 87 212 0 36 0 chr11 33298189 33298217 -117485336 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2226 70 0 21 chr11 33298222 33298506 -117485047 - AluY SINE Alu -33 278 1 1591 147 34 101 chr11 33298506 33298617 -117484936 - AluJo SINE Alu -229 83 1 916 201 19 48 chr11 33298617 33298804 -117484749 - L1MC4 LINE L1 -475 7567 7385 274 293 32 38 chr11 33298991 33299148 -117484405 - MIR SINE MIR 0 262 107 299 275 12 0 chr11 33299156 33299236 -117484317 + MLT1H LTR MaLR 16 96 -453 1485 218 48 73 chr11 33299246 33299783 -117483770 - MER39 LTR ERV1 0 707 1 683 281 28 51 chr11 33299786 33300039 -117483514 + MLT1H LTR MaLR 104 350 -199 408 219 31 31 chr11 33300038 33300134 -117483419 + MLT1H LTR MaLR 454 549 0 * 201 308 29 39 chr11 33300140 33300170 -117483383 - MIR SINE MIR -155 107 78 1925 108 71 31 chr11 33300170 33300495 -117483058 + MER44D DNA MER2_type 1 608 -1 201 308 29 39 chr11 33300495 33300568 -117482985 - MIR SINE MIR -184 78 5 422 307 153 5 chr11 33301265 33301480 -117482073 - MIR SINE MIR -3 259 13 2635 25 6 19 chr11 33303090 33303428 -117480125 - AluY SINE Alu 0 334 1 420 283 127 29 chr11 33304990 33305163 -117478390 + MIR SINE MIR 70 259 -3 496 285 21 38 chr11 33305327 33305513 -117478040 - MIR SINE MIR -74 188 6 1591 259 114 46 chr11 33306542 33306921 -117476632 + L2 LINE L2 2225 2577 -736 3445 52 5 23 chr11 33306921 33307364 -117476189 - L1PA7 LINE L1 0 6154 5720 1591 259 114 46 chr11 33307364 33307703 -117475850 + L2 LINE L2 2577 2892 -421 632 239 0 0 chr11 33307703 33307837 -117475716 - MER94 DNA DNA 0 134 1 1591 259 114 46 chr11 33307837 33308129 -117475424 + L2 LINE L2 2892 3306 -7 222 263 84 11 chr11 33309401 33309496 -117474057 + MIR3 SINE MIR 100 201 -7 2340 156 0 3 chr11 33309701 33310067 -117473486 - MLT1A1 LTR MaLR 0 365 1 483 296 92 5 chr11 33310215 33310411 -117473142 - MIR SINE MIR -20 242 30 216 0 0 0 chr11 33311051 33311075 -117472478 + (GTCTG)n Simple_repeat Simple_repeat 2 25 0 4019 136 36 39 chr11 33313369 33313995 -117469558 - L1MC1 LINE L1 -5 6328 5703 2281 98 0 0 chr11 33313995 33314281 -117469272 + AluSx SINE Alu 7 292 -20 4019 136 36 39 chr11 33314281 33314351 -117469202 - L1MC1 LINE L1 -630 5703 5634 1151 218 0 40 chr11 33314354 33314606 -117468947 - MSTD LTR MaLR 0 396 155 229 271 34 0 chr11 33314655 33314714 -117468839 + CT-rich Low_complexity Low_complexity 2 62 0 676 110 0 0 chr11 33314725 33314816 -117468737 - AluSq/x SINE Alu -163 150 60 1347 186 71 14 chr11 33314845 33315025 -117468528 - AluJo SINE Alu 0 312 107 456 19 0 0 chr11 33315025 33315078 -117468475 + (TG)n Simple_repeat Simple_repeat 2 54 0 1347 186 71 14 chr11 33315078 33315192 -117468361 - AluJo SINE Alu -205 107 1 1734 123 0 0 chr11 33315284 33315512 -117468041 + AluSx SINE Alu 1 228 -84 696 199 74 7 chr11 33315517 33315668 -117467885 - MLT1A2 LTR MaLR -229 161 1 2461 212 83 74 chr11 33315669 33316100 -117467453 - L1MC5 LINE L1 -435 7526 7100 17373 35 1 0 chr11 33316100 33318918 -117464635 + L1PA4 LINE L1 3326 6152 -3 2461 212 83 74 chr11 33318918 33318934 -117464619 - L1MC5 LINE L1 -861 7100 7086 1476 205 25 21 chr11 33318934 33319217 -117464336 + AluJb SINE Alu 1 284 -28 1188 0 0 0 chr11 33319217 33319349 -117464204 + (GGAAA)n Simple_repeat Simple_repeat 3 134 0 2461 212 83 74 chr11 33319349 33319967 -117463586 - L1MC5 LINE L1 -874 7087 6430 5405 96 4 3 chr11 33321307 33322059 -117461494 - L1PA14 LINE L1 -3 6158 5406 864 272 85 35 chr11 33322349 33322691 -117460862 - MLT1I LTR MaLR -22 387 29 206 327 89 0 chr11 33323777 33323878 -117459675 - MIR SINE MIR -69 139 30 634 322 5 0 chr11 33324367 33324575 -117458978 + MIR SINE MIR 18 226 -36 2163 116 0 0 chr11 33324598 33324925 -117458628 - AluSx SINE Alu 0 327 1 319 317 19 0 chr11 33325068 33325172 -117458381 - MIR3 SINE MIR -15 193 88 1204 223 26 21 chr11 33325606 33326076 -117457477 - MLT1H1 LTR MaLR -2 553 30 519 288 38 6 chr11 33326522 33326682 -117456871 - MIR SINE MIR -29 233 69 1054 230 19 55 chr11 33326687 33327048 -117456505 - L2 LINE L2 -3 3310 2963 504 330 22 0 chr11 33327155 33327340 -117456213 - MER5A DNA MER1_type 0 189 1 246 250 28 14 chr11 33327578 33327650 -117455903 + MIR SINE MIR 47 119 -143 623 295 44 20 chr11 33328402 33328653 -117454900 - MIR SINE MIR 0 262 6 1793 163 14 7 chr11 33328837 33329132 -117454421 - AluJo SINE Alu -15 297 1 346 326 37 0 chr11 33330661 33330796 -117452757 + MIR SINE MIR 8 147 -115 223 276 138 11 chr11 33330866 33330953 -117452600 + MIR SINE MIR 150 247 -15 1801 163 0 3 chr11 33331070 33331424 -117452129 - AluJb SINE Alu 0 353 1 592 241 185 14 chr11 33332475 33332827 -117450726 - L1ME4a LINE L1 -4 6117 5706 363 247 11 0 chr11 33332998 33333087 -117450466 - L1ME4a LINE L1 -457 5664 5575 715 252 146 38 chr11 33333300 33333724 -117449829 - MLT1K LTR MaLR -4 472 3 234 160 11 213 chr11 33334016 33334110 -117449443 - L2 LINE L2 0 3313 3239 243 192 115 0 chr11 33334711 33334763 -117448790 - L2 LINE L2 -1 3312 3255 2041 141 46 32 chr11 33334818 33335188 -117448365 + THE1C LTR MaLR 1 375 0 621 249 46 5 chr11 33335371 33335568 -117447985 + MIR SINE MIR 46 250 -12 312 291 94 71 chr11 33335665 33336047 -117447506 - L2 LINE L2 0 3313 2923 268 277 24 12 chr11 33336111 33336194 -117447359 + MER117 DNA MER1_type 114 197 0 2483 70 0 7 chr11 33336404 33336705 -117446848 + AluSq SINE Alu 1 299 -14 2317 96 0 16 chr11 33337697 33338000 -117445553 + AluSq SINE Alu 1 298 -15 342 0 0 0 chr11 33338380 33338418 -117445135 + (CA)n Simple_repeat Simple_repeat 2 39 0 1288 171 24 20 chr11 33338579 33338825 -117444728 - L1PA16 LINE L1 -1 6165 5919 219 152 0 0 chr11 33338825 33338871 -117444682 + CT-rich Low_complexity Low_complexity 2 47 0 1183 181 0 14 chr11 33339503 33339713 -117443840 + MER3 DNA MER1_type 3 209 0 467 319 46 17 chr11 33339914 33340152 -117443401 + MIR SINE MIR 8 252 -10 235 270 0 54 chr11 33340167 33340241 -117443312 - L2 LINE L2 0 3272 3203 423 188 12 0 chr11 33341219 33341299 -117442254 - MIR3 SINE MIR -3 205 125 477 323 67 53 chr11 33341523 33341808 -117441745 + L2 LINE L2 2979 3267 -5 819 134 37 22 chr11 33342050 33342184 -117441369 + AluJb SINE Alu 1 136 -176 271 350 42 0 chr11 33342388 33342508 -117441045 - MIR3 SINE MIR -14 194 70 2054 133 0 0 chr11 33343311 33343596 -117439957 - AluSx SINE Alu -21 291 7 256 306 99 25 chr11 33343627 33343748 -117439805 - L2 LINE L2 -5 3267 3138 280 269 154 23 chr11 33344317 33344447 -117439106 - MIR SINE MIR -44 218 72 1553 263 79 8 chr11 33344753 33345393 -117438160 - L1ME3A LINE L1 -219 5951 5249 1943 181 13 16 chr11 33345393 33345769 -117437784 - THE1C LTR MaLR 0 375 1 1553 263 79 8 chr11 33345769 33345836 -117437717 - L1ME3A LINE L1 -921 5249 5188 1074 140 55 0 chr11 33345843 33346007 -117437546 - AluSg/x SINE Alu -8 304 132 2239 117 0 0 chr11 33346057 33346356 -117437197 + AluSq SINE Alu 1 299 -14 439 223 124 0 chr11 33346366 33346487 -117437066 - L1MC4 LINE L1 -16 8026 7891 * 1249 270 80 50 chr11 33346468 33347205 -117436348 - L1ME3A LINE L1 -1736 4410 3652 730 285 179 40 chr11 33347239 33347709 -117435844 - MLT1G LTR MaLR 0 590 56 289 196 139 12 chr11 33347717 33347821 -117435732 - AluJ/FLAM SINE Alu -206 96 54 253 262 16 0 chr11 33347822 33347883 -117435670 - MLT1G LTR MaLR -505 62 1 516 303 9 14 chr11 33347888 33348106 -117435447 - L1ME3A LINE L1 -2498 3648 3432 1697 226 34 18 chr11 33348121 33348501 -117435052 - MER70B LTR ERVL -192 386 1 242 302 93 0 chr11 33348547 33348633 -117434920 + L2 LINE L2 3142 3235 -37 296 280 76 15 chr11 33348701 33348833 -117434720 - L2 LINE L2 -207 3065 2926 2588 118 3 3 chr11 33348862 33349226 -117434327 - THE1B LTR MaLR 0 364 1 354 176 0 40 chr11 33349241 33349315 -117434238 + L2 LINE L2 3202 3272 0 2879 184 5 43 chr11 33349385 33349840 -117433713 - MER74A LTR ERVL 0 558 128 2435 81 0 0 chr11 33349840 33350135 -117433418 - AluSg SINE Alu -15 295 1 2879 184 5 43 chr11 33350135 33350256 -117433297 - MER74A LTR ERVL -430 128 4 314 261 0 0 chr11 33350395 33350460 -117433093 - L2 LINE L2 0 3272 3208 415 250 100 0 chr11 33351414 33351554 -117431999 - MIR SINE MIR -6 256 103 574 158 10 0 chr11 33352222 33352354 -117431199 + AluY SINE Alu 183 315 0 1698 255 31 31 chr11 33352590 33353077 -117430476 + MLT1J LTR MaLR 3 489 -22 2434 77 3 0 chr11 33353111 33353409 -117430144 - AluY SINE Alu -12 299 1 240 234 78 13 chr11 33353631 33353708 -117429845 + MIR SINE MIR 71 152 -110 705 211 25 6 chr11 33353775 33353936 -117429617 + MIR3 SINE MIR 37 200 -8 765 245 0 69 chr11 33353988 33354204 -117429349 - MER63A DNA MER1_type -8 202 2 397 229 48 0 chr11 33354827 33354932 -117428621 + MER103 DNA DNA 6 115 -51 15513 189 23 17 chr11 33355148 33360603 -117422950 + L1P5 LINE L1 735 6494 -373 244 109 43 0 chr11 33360603 33360649 -117422904 + LTR66 LTR ERVL 392 439 -171 280 281 0 0 chr11 33360665 33360754 -117422799 + L1MC4 LINE L1 6614 6702 -1340 2358 135 0 11 chr11 33360757 33361120 -117422433 + L1PB1 LINE L1 5783 6141 -10 384 296 0 40 chr11 33361127 33361279 -117422274 + L1ME LINE L1 5474 5619 -545 246 296 56 37 chr11 33361284 33361392 -117422161 - MER5C DNA MER1_type -214 110 1 1671 138 72 75 chr11 33362602 33362978 -117420575 + THE1C LTR MaLR 1 375 0 297 267 114 0 chr11 33363285 33363390 -117420163 - MER91C DNA MER1_type 0 140 24 394 255 21 52 chr11 33363881 33364073 -117419480 - L2 LINE L2 -257 3056 2871 221 30 61 0 chr11 33365171 33365204 -117418349 + A-rich Low_complexity Low_complexity 1 35 0 479 259 46 17 chr11 33365240 33365414 -117418139 - MIR SINE MIR -58 204 26 258 261 110 4 chr11 33365496 33365608 -117417945 + MIR3 SINE MIR 62 187 -21 1055 240 29 0 chr11 33366521 33366767 -117416786 + MIR SINE MIR 10 262 0 298 267 133 12 chr11 33368133 33368310 -117415243 + MIR SINE MIR 43 250 -12 266 248 248 37 chr11 33368612 33368773 -117414780 + MIR SINE MIR 51 245 -17 1992 204 60 24 chr11 33369038 33369504 -117414049 - MLT1D LTR MaLR 0 505 23 4170 160 21 4 chr11 33370404 33371117 -117412436 - L1MB2 LINE L1 0 6171 5447 531 290 27 21 chr11 33371278 33371464 -117412089 - L1MC4a LINE L1 -1894 5914 5728 858 276 14 5 chr11 33371495 33371712 -117411841 + MIR SINE MIR 1 219 -43 266 204 51 41 chr11 33371750 33371809 -117411744 - L1MC4a LINE L1 -422 5699 5637 485 146 19 39 chr11 33371809 33371912 -117411641 - L1PA12 LINE L1 0 6168 6068 266 204 51 41 chr11 33371912 33371950 -117411603 - L1MC4a LINE L1 -484 5637 5601 454 271 162 32 chr11 33372566 33372850 -117410703 - L1ME4a LINE L1 -4 6117 5797 248 234 160 21 chr11 33372918 33373012 -117410541 + MIR3 SINE MIR 9 115 -93 2295 87 0 0 chr11 33373075 33373361 -117410192 + AluSx SINE Alu 20 305 -7 251 225 207 18 chr11 33373819 33373930 -117409623 + MIR3 SINE MIR 39 170 -38 182 304 14 14 chr11 33373937 33374006 -117409547 - L2 LINE L2 0 3272 3204 339 78 56 49 chr11 33374075 33374217 -117409336 + (TATAA)n Simple_repeat Simple_repeat 2 144 0 650 266 25 30 chr11 33374221 33374424 -117409129 - MIR SINE MIR -49 213 12 595 288 111 4 chr11 33374471 33374697 -117408856 - MIR SINE MIR -12 250 1 287 321 15 0 chr11 33375224 33375355 -117408198 + (TGAA)n Simple_repeat Simple_repeat 3 135 0 447 316 109 0 chr11 33377870 33378063 -117405490 - MIR SINE MIR -34 228 15 264 319 86 0 chr11 33378097 33378213 -117405340 - MIR3 SINE MIR -19 189 64 311 217 59 86 chr11 33378591 33378743 -117404810 + MIR3 SINE MIR 7 154 -54 5040 47 8 13 chr11 33378963 33379988 -117403565 - SVA Other Other -955 1386 1 204 97 0 0 chr11 33379989 33380020 -117403533 + (GGGAGA)n Simple_repeat Simple_repeat 1 31 0 753 234 52 40 chr11 33380432 33380684 -117402869 - MIR SINE MIR 0 262 8 207 0 0 0 chr11 33381748 33381771 -117401782 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 614 206 29 7 chr11 33381792 33381928 -117401625 - L1ME1 LINE L1 -117 6049 5911 277 153 34 0 chr11 33381937 33381996 -117401557 - L1ME1 LINE L1 -855 5291 5231 426 257 198 21 chr11 33383125 33383463 -117400090 - L2 LINE L2 -756 2558 2161 728 186 0 41 chr11 33384034 33384179 -117399374 - MER20 DNA MER1_type -1 218 80 653 309 14 14 chr11 33384206 33384371 -117399182 + MIR SINE MIR 43 211 -51 1747 162 0 11 chr11 33384371 33384680 -117398873 + AluJb SINE Alu 1 306 0 653 309 14 14 chr11 33384680 33384733 -117398820 + MIR SINE MIR 210 262 0 711 68 0 29 chr11 33384837 33384940 -117398613 + L1PA8 LINE L1 6071 6170 -2 25 31 0 0 chr11 33385190 33385222 -117398331 + AT_rich Low_complexity Low_complexity 1 32 0 2287 117 3 0 chr11 33385632 33385941 -117397612 - AluSg SINE Alu 0 310 1 531 223 12 36 chr11 33386380 33386401 -117397152 - L1MA10 LINE L1 0 6334 6314 1510 211 42 29 chr11 33386401 33386622 -117396931 - L1ME2 LINE L1 -9 6155 5925 2343 84 7 0 chr11 33386622 33386918 -117396635 - AluSx SINE Alu -14 298 1 1510 211 42 29 chr11 33386918 33387104 -117396449 - L1ME2 LINE L1 -239 5925 5743 269 293 132 19 chr11 33387172 33387384 -117396169 - L1ME4a LINE L1 -38 6083 5848 3059 270 57 6 chr11 33387502 33388544 -117395009 - L2 LINE L2 -440 2874 1780 1734 173 22 31 chr11 33388620 33388979 -117394574 - MLT1A1 LTR MaLR 0 365 10 326 303 79 30 chr11 33389066 33389231 -117394322 + MIR3 SINE MIR 25 197 -11 283 272 48 40 chr11 33389581 33389706 -117393847 - MIR SINE MIR -63 145 20 906 265 101 45 chr11 33390175 33390511 -117393042 - MLT1H LTR MaLR -194 355 1 216 237 13 26 chr11 33392145 33392221 -117391332 + T-rich Low_complexity Low_complexity 5 79 0 2088 132 0 25 chr11 33392624 33392942 -117390611 - AluSx SINE Alu -2 310 1 728 244 18 0 chr11 33393501 33393669 -117389884 + MIR SINE MIR 43 213 -49 212 321 64 9 chr11 33393997 33394106 -117389447 + MIR SINE MIR 78 192 -70 221 105 26 0 chr11 33394160 33394198 -117389355 + L2 LINE L2 3267 3305 -8 351 96 0 0 chr11 33394624 33394676 -117388877 + (TTCA)n Simple_repeat Simple_repeat 1 52 0 316 332 183 13 chr11 33394679 33394980 -117388573 - L2 LINE L2 -35 3237 2886 197 211 289 11 chr11 33395061 33395151 -117388402 + MIR SINE MIR 35 149 -113 24 106 0 0 chr11 33395440 33395534 -117388019 + GC_rich Low_complexity Low_complexity 1 94 0 657 250 41 49 chr11 33395674 33395918 -117387635 + MIR SINE MIR 21 262 0 433 260 49 16 chr11 33396444 33396567 -117386986 - L2 LINE L2 -13 3259 3133 248 273 112 48 chr11 33397061 33397248 -117386305 - L2 LINE L2 -1 3312 3114 361 294 145 8 chr11 33397459 33397721 -117385832 - L1ME4a LINE L1 -80 6041 5744 346 314 13 38 chr11 33398080 33398239 -117385314 + MIR SINE MIR 59 213 -49 442 295 155 0 chr11 33398276 33398476 -117385077 - MIR SINE MIR -30 232 2 273 287 16 82 chr11 33399382 33399504 -117384049 - L2 LINE L2 -4 3268 3155 627 214 29 0 chr11 33399680 33399820 -117383733 + MIR SINE MIR 18 161 -101 * 706 198 31 12 chr11 33399809 33399971 -117383582 - MIR SINE MIR 0 262 98 275 218 140 99 chr11 33400066 33400235 -117383318 + L1ME4a LINE L1 5866 6049 -72 1969 151 17 7 chr11 33400235 33400533 -117383020 - AluJb SINE Alu -11 301 1 275 218 140 99 chr11 33400533 33400606 -117382947 + L1ME4a LINE L1 6049 6118 -3 347 326 47 0 chr11 33401198 33401327 -117382226 + L2 LINE L2 3176 3310 -3 774 238 66 78 chr11 33401454 33401774 -117381779 - MER46C DNA MER2_type -21 317 2 416 295 115 11 chr11 33401822 33402005 -117381548 + MIR SINE MIR 58 259 -3 196 271 47 19 chr11 33402006 33402113 -117381440 - MIR SINE MIR -61 201 92 1690 174 18 0 chr11 33402118 33402393 -117381160 + AluJo SINE Alu 11 290 -22 1709 144 59 4 chr11 33402415 33402685 -117380868 + AluSg SINE Alu 10 294 -16 212 178 0 22 chr11 33403499 33403544 -117380009 + GA-rich Low_complexity Low_complexity 1 44 0 930 207 0 5 chr11 33403951 33404144 -117379409 - MER96B DNA MER1_type? -183 234 43 385 233 45 68 chr11 33404163 33404296 -117379257 - LTR16C LTR ERVL -236 255 126 373 132 13 53 chr11 33404482 33404558 -117378995 + MLT1K LTR MaLR 510 582 -6 2254 149 56 26 chr11 33404625 33405138 -117378415 - MLT2A2 LTR ERVL 0 554 1 248 260 87 10 chr11 33405583 33405687 -117377866 + L2 LINE L2 3161 3272 0 293 290 179 16 chr11 33405790 33405970 -117377583 - MIR SINE MIR -40 222 15 363 229 72 0 chr11 33407257 33407340 -117376213 + L2 LINE L2 3184 3272 0 22 0 0 0 chr11 33407353 33407375 -117376178 + AT_rich Low_complexity Low_complexity 1 22 0 1985 117 48 0 chr11 33407944 33408247 -117375306 - AluSg SINE Alu 0 316 1 1727 112 0 4 chr11 33408693 33408926 -117374627 + AluSg SINE Alu 1 232 -78 401 289 99 35 chr11 33409145 33409377 -117374176 + MIR SINE MIR 16 262 0 216 363 52 0 chr11 33409731 33409866 -117373687 + MIR SINE MIR 25 166 -96 607 289 172 18 chr11 33410504 33410836 -117372717 + L1ME4a LINE L1 5737 6119 -2 305 325 97 7 chr11 33411576 33411730 -117371823 - MIR3 SINE MIR -22 186 19 27 0 0 0 chr11 33411871 33411898 -117371655 + AT_rich Low_complexity Low_complexity 1 27 0 473 311 28 19 chr11 33411935 33412147 -117371406 + MIR SINE MIR 34 247 -15 202 204 259 0 chr11 33412248 33412302 -117371251 - L2 LINE L2 0 3272 3205 185 138 0 0 chr11 33413034 33413063 -117370490 - MIR3 SINE MIR -27 181 153 491 277 101 0 chr11 33413063 33413211 -117370342 + MER117 DNA MER1_type 1 163 -34 271 190 17 0 chr11 33413265 33413323 -117370230 - MIR SINE MIR -109 99 41 555 277 79 72 chr11 33413487 33414017 -117369536 - MLT1F LTR MaLR -7 535 2 219 69 0 0 chr11 33414613 33414642 -117368911 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 722 273 88 42 chr11 33415777 33416298 -117367255 + L1ME4a LINE L1 5573 6117 -4 291 218 0 0 chr11 33416469 33416524 -117367029 + L2 LINE L2 3218 3272 0 499 223 0 0 chr11 33417344 33417447 -117366106 + MIR SINE MIR 47 149 -113 335 309 91 6 chr11 33417576 33417741 -117365812 - MIR SINE MIR -70 192 14 368 310 13 39 chr11 33418708 33418810 -117364743 - MIR SINE MIR -1 261 163 2611 112 3 8 chr11 33418810 33419176 -117364377 - THE1B LTR MaLR 0 364 1 368 310 13 39 chr11 33419176 33419228 -117364325 - MIR SINE MIR -99 163 111 241 353 64 12 chr11 33419284 33419457 -117364096 - L2 LINE L2 -173 3099 2918 356 296 50 25 chr11 33419645 33419804 -117363749 - MIR SINE MIR -69 193 31 275 333 103 32 chr11 33420614 33420770 -117362783 + MER5B DNA MER1_type 11 177 -1 419 304 82 10 chr11 33420930 33421124 -117362429 + MIR SINE MIR 54 261 -1 198 0 0 0 chr11 33421140 33421162 -117362391 + (CA)n Simple_repeat Simple_repeat 2 23 0 279 122 0 0 chr11 33421162 33421211 -117362342 + (GA)n Simple_repeat Simple_repeat 1 49 0 288 200 120 30 chr11 33421211 33421311 -117362242 + L1ME4a LINE L1 5964 6072 -49 300 313 111 56 chr11 33422175 33422552 -117361001 - L2 LINE L2 -27 3245 2848 1251 227 74 72 chr11 33422589 33422828 -117360725 + MER113 DNA MER1_type? 6 243 -278 423 0 0 0 chr11 33422828 33422875 -117360678 + (CA)n Simple_repeat Simple_repeat 2 48 0 1251 227 74 72 chr11 33422875 33423147 -117360406 + MER113 DNA MER1_type? 243 518 -3 203 256 29 23 chr11 33424680 33424852 -117358701 + (TATAA)n Simple_repeat Simple_repeat 5 177 0 23 54 0 0 chr11 33424863 33424900 -117358653 + AT_rich Low_complexity Low_complexity 1 37 0 653 272 55 5 chr11 33425518 33425735 -117357818 - MIR SINE MIR -1 261 34 180 0 0 0 chr11 33426067 33426087 -117357466 + (T)n Simple_repeat Simple_repeat 1 20 0 407 298 69 18 chr11 33426492 33426710 -117356843 + MLT1L LTR MaLR 147 375 -240 298 265 83 38 chr11 33426787 33426919 -117356634 + MLT1L LTR MaLR 477 614 -1 350 317 19 0 chr11 33427419 33427523 -117356030 + MLT1J1 LTR MaLR 69 174 -272 2976 33 41 0 chr11 33427619 33427981 -117355572 - L1PA4 LINE L1 -2 6153 5777 4023 28 2 0 chr11 33429150 33429654 -117353899 + L1PA3 LINE L1 5679 6183 0 1807 173 0 16 chr11 33430807 33431144 -117352409 + AluJo SINE Alu 1 312 0 331 254 35 77 chr11 33431145 33431314 -117352239 - MER103 DNA DNA -1 165 4 2165 128 3 6 chr11 33432463 33432775 -117350778 - AluSx SINE Alu -1 311 1 193 177 0 32 chr11 33432799 33432861 -117350692 + GA-rich Low_complexity Low_complexity 1 60 0 315 252 122 8 chr11 33433068 33433199 -117350354 + MLT1L LTR MaLR 133 278 -337 308 237 29 86 chr11 33433451 33433590 -117349963 + MIR SINE MIR 60 190 -72 2510 81 0 0 chr11 33433825 33434132 -117349421 + AluY SINE Alu 1 307 -4 191 374 44 33 chr11 33434310 33434401 -117349152 - L2 LINE L2 -40 3232 3141 198 0 0 0 chr11 33434675 33434697 -117348856 + (TG)n Simple_repeat Simple_repeat 1 22 0 234 314 57 29 chr11 33434724 33434864 -117348689 - L2 LINE L2 -456 2858 2715 206 200 20 40 chr11 33435647 33435697 -117347856 + L2 LINE L2 3034 3082 -190 606 304 20 10 chr11 33435797 33436001 -117347552 - MIR SINE MIR -56 206 1 186 103 0 0 chr11 33437315 33437344 -117346209 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 1036 195 91 5 chr11 33437357 33437578 -117345975 - AluJo SINE Alu -72 240 1 435 52 0 0 chr11 33438697 33438755 -117344798 + (CA)n Simple_repeat Simple_repeat 1 58 0 533 229 11 87 chr11 33441174 33441357 -117342196 + MER21B LTR ERV1 681 849 -14 3187 140 61 23 chr11 33442525 33443060 -117340493 - L1MB8 LINE L1 -1 6177 5613 1681 161 29 63 chr11 33443060 33443438 -117340115 - MLT1A1 LTR MaLR 0 365 1 3187 140 61 23 chr11 33443438 33443522 -117340031 - L1MB8 LINE L1 -565 5613 5534 534 211 58 26 chr11 33443789 33443945 -117339608 + MER103 DNA DNA 2 162 -4 424 240 41 55 chr11 33444203 33444349 -117339204 - MIR SINE MIR -111 151 8 273 29 0 0 chr11 33444540 33444574 -117338979 + (CA)n Simple_repeat Simple_repeat 2 35 0 342 0 0 0 chr11 33444626 33444664 -117338889 + (T)n Simple_repeat Simple_repeat 1 38 0 911 189 0 0 chr11 33445036 33445239 -117338314 + FRAM SINE Alu 1 203 0 1879 148 27 13 chr11 33445870 33446168 -117337385 - AluJb SINE Alu -10 302 1 186 185 169 15 chr11 33446205 33446270 -117337283 + MIR3 SINE MIR 131 205 -3 533 265 115 52 chr11 33446565 33446931 -117336622 + MLT1K LTR MaLR 191 579 -9 186 71 0 0 chr11 33447477 33447505 -117336048 + (TTTTTG)n Simple_repeat Simple_repeat 4 31 0 467 297 114 5 chr11 33447802 33448004 -117335549 + L2 LINE L2 2837 3060 -253 636 255 132 32 chr11 33448004 33448498 -117335055 - MLT1G LTR MaLR 0 595 1 422 276 115 46 chr11 33448516 33448733 -117334820 + L2 LINE L2 3074 3305 -8 416 204 41 0 chr11 33449879 33449977 -117333576 + L1ME LINE L1 5628 5729 -392 1508 121 0 39 chr11 33450024 33450256 -117333297 + AluSg/x SINE Alu 70 292 -18 1581 191 10 13 chr11 33450366 33450675 -117332878 + AluJo SINE Alu 5 312 0 1633 50 0 0 chr11 33450731 33450929 -117332624 + L1PA7 LINE L1 5949 6146 -8 1196 83 12 12 chr11 33451040 33451208 -117332345 - L1MA1 LINE L1 0 6302 6135 1033 217 191 31 chr11 33451654 33452004 -117331549 - MLT1J LTR MaLR -105 406 1 408 217 47 28 chr11 33453398 33453504 -117330049 - MER69 DNA AcHobo -1118 108 1 200 204 102 102 chr11 33453580 33453629 -117329924 + MIR SINE MIR 52 100 -162 1837 143 58 33 chr11 33453629 33453993 -117329560 - THE1C LTR MaLR 0 375 3 200 204 102 102 chr11 33453993 33454041 -117329512 + MIR SINE MIR 99 149 -113 486 301 68 51 chr11 33454048 33454160 -117329393 + MLT1J LTR MaLR 1 110 -336 1934 221 8 65 chr11 33454160 33454653 -117328900 - LTR40c LTR ERVL 0 465 1 486 301 68 51 chr11 33454653 33455004 -117328549 + MLT1J LTR MaLR 110 444 -2 245 75 25 0 chr11 33455320 33455360 -117328193 + (TC)n Simple_repeat Simple_repeat 2 42 0 292 245 30 73 chr11 33455480 33455652 -117327901 + MIR SINE MIR 38 201 -61 1075 162 22 0 chr11 33455727 33455912 -117327641 + MER5A DNA MER1_type 1 189 0 24 0 0 0 chr11 33455971 33455995 -117327558 + AT_rich Low_complexity Low_complexity 1 24 0 1053 284 100 20 chr11 33456231 33456640 -117326913 - MLT1K LTR MaLR -8 580 139 321 231 34 34 chr11 33456694 33456811 -117326742 + MLT1J LTR MaLR 394 510 -1 256 162 40 81 chr11 33456959 33456995 -117326558 + MIR SINE MIR 129 162 -100 1359 196 72 36 chr11 33456995 33457327 -117326226 - MER2 DNA MER2_type 0 344 1 256 162 40 81 chr11 33457327 33457364 -117326189 + MIR SINE MIR 162 199 -63 950 213 36 32 chr11 33458327 33458548 -117325005 + MER58A DNA MER1_type 3 224 0 508 199 81 44 chr11 33458938 33459074 -117324479 - Charlie8 DNA MER1_type -2151 266 126 949 98 7 7 chr11 33459195 33459348 -117324205 + (GGAA)n Simple_repeat Simple_repeat 3 155 0 251 203 14 0 chr11 33459683 33459757 -117323796 + GA-rich Low_complexity Low_complexity 1 75 0 743 268 81 7 chr11 33459878 33460162 -117323391 + L1ME4a LINE L1 5815 6119 -2 229 195 0 0 chr11 33461529 33461570 -117321983 + (CA)n Simple_repeat Simple_repeat 2 42 0 1968 180 41 21 chr11 33461602 33461990 -117321563 + MSTD LTR MaLR 1 396 0 454 328 44 16 chr11 33462046 33462296 -117321257 + MIR SINE MIR 3 259 -3 2200 124 0 0 chr11 33462828 33463126 -117320427 + AluSx SINE Alu 3 300 -12 574 103 0 0 chr11 33463461 33463539 -117320014 - AluS SINE Alu -232 80 3 344 217 78 83 chr11 33464171 33464304 -117319249 - MIR SINE MIR -67 141 24 286 221 29 0 chr11 33464371 33464439 -117319114 - MER96 DNA MER1_type? -24 151 82 300 247 129 73 chr11 33465327 33465505 -117318048 - MIR SINE MIR -55 207 20 201 222 141 40 chr11 33465562 33465661 -117317892 - MIR SINE MIR -75 187 79 280 313 16 16 chr11 33466031 33466159 -117317394 + LTR33 LTR ERVL 328 455 -66 571 253 62 34 chr11 33466245 33466443 -117317110 - LTR33 LTR ERVL 0 521 320 359 312 32 48 chr11 33466446 33466632 -117316921 - LTR33 LTR ERVL -332 189 7 1225 267 53 15 chr11 33466739 33467132 -117316421 + L1MC4 LINE L1 7190 7597 -445 1079 259 16 8 chr11 33467133 33467418 -117316135 + L1ME3A LINE L1 5813 6103 -67 275 49 24 0 chr11 33467433 33467474 -117316079 + (TG)n Simple_repeat Simple_repeat 2 43 0 301 218 7 102 chr11 33467474 33467613 -117315940 + L1MC4 LINE L1 7916 8042 0 3399 97 11 40 chr11 33467998 33468298 -117315255 - L1PA13 LINE L1 -2 6161 5880 2226 98 0 14 chr11 33468298 33468627 -117314926 + AluSg SINE Alu 1 325 0 3399 97 11 40 chr11 33468627 33468849 -117314704 - L1PA13 LINE L1 -283 5880 5653 281 182 18 0 chr11 33469401 33469456 -117314097 + L2 LINE L2 3256 3311 -2 370 244 183 0 chr11 33469870 33470001 -117313552 - MIR SINE MIR -16 246 92 1199 223 54 113 chr11 33470003 33470375 -117313178 + MLT2B1 LTR ERVL 1 350 -64 605 170 35 6 chr11 33470379 33470550 -117313003 + (TAGA)n Simple_repeat Simple_repeat 2 177 0 326 76 21 0 chr11 33470552 33470605 -117312948 + MLT2B1 LTR ERVL 400 520 0 795 236 110 80 chr11 33470795 33470857 -117312696 + MLT1L LTR MaLR 236 295 -320 2183 111 3 3 chr11 33470857 33471155 -117312398 + AluSc SINE Alu 2 299 -10 795 236 110 80 chr11 33471155 33471456 -117312097 + MLT1L LTR MaLR 295 610 -5 186 133 0 0 chr11 33471635 33471665 -117311888 + (TCTA)n Simple_repeat Simple_repeat 3 32 0 978 290 24 10 chr11 33472663 33472953 -117310600 - MLT1I LTR MaLR 0 409 116 258 330 38 0 chr11 33474462 33474568 -117308985 - MIR SINE MIR -141 121 12 1305 90 58 0 chr11 33474569 33474757 -117308796 + MER30 DNA MER1_type 1 199 -31 363 291 103 8 chr11 33474835 33474952 -117308601 + MIR SINE MIR 22 149 -113 288 200 158 0 chr11 33475627 33475722 -117307831 + MIR SINE MIR 2 111 -151 1706 219 68 35 chr11 33475722 33476211 -117307342 + MLT1D LTR MaLR 1 505 0 214 273 117 0 chr11 33476444 33476521 -117307032 + MIR SINE MIR 57 142 -120 297 203 0 0 chr11 33476758 33476817 -117306736 - L2 LINE L2 -3 3310 3252 245 301 161 0 chr11 33476855 33476948 -117306605 - MER91A DNA MER1_type 0 196 89 231 88 0 0 chr11 33477834 33477868 -117305685 + (A)n Simple_repeat Simple_repeat 1 34 0 275 319 119 39 chr11 33477885 33478170 -117305383 - MLT1K LTR MaLR -67 521 214 607 272 48 28 chr11 33478352 33478686 -117304867 + LTR33 LTR ERVL 47 452 -69 737 208 157 20 chr11 33478704 33478901 -117304652 + MER58A DNA MER1_type 1 224 0 21 0 0 0 chr11 33479631 33479652 -117303901 + AT_rich Low_complexity Low_complexity 1 21 0 262 253 36 31 chr11 33480012 33480132 -117303421 + MIR SINE MIR 20 145 -63 254 243 207 18 chr11 33480176 33480287 -117303266 - L2 LINE L2 0 3272 3141 187 205 51 39 chr11 33480587 33480665 -117302888 - L2 LINE L2 -497 2817 2739 223 269 0 0 chr11 33480957 33481009 -117302544 + L2 LINE L2 3211 3262 -10 302 274 15 74 chr11 33482259 33482385 -117301168 + MER5A DNA MER1_type 1 120 -69 2441 73 7 0 chr11 33482385 33482685 -117300868 - AluSp SINE Alu -7 306 5 420 20 0 0 chr11 33483338 33483387 -117300166 + (TAA)n Simple_repeat Simple_repeat 1 49 0 415 148 10 40 chr11 33483428 33483529 -117300024 - L1MC5 LINE L1 -31 7930 7833 1956 151 7 3 chr11 33483549 33483854 -117299699 - AluSx SINE Alu -6 306 1 683 258 54 41 chr11 33483889 33484258 -117299295 - L1MC5 LINE L1 -233 7728 7355 268 313 94 39 chr11 33484347 33484580 -117298973 + L2 LINE L2 1706 1951 -1363 497 292 32 50 chr11 33484810 33485088 -117298465 - MLT1H1 LTR MaLR -273 282 11 363 283 122 69 chr11 33485135 33485617 -117297936 + L2 LINE L2 1984 2504 -810 207 0 0 0 chr11 33485617 33485640 -117297913 + (TC)n Simple_repeat Simple_repeat 2 24 0 363 283 122 69 chr11 33485640 33485740 -117297813 + L2 LINE L2 2504 2597 -717 383 266 136 34 chr11 33485956 33486133 -117297420 + L2 LINE L2 2582 2776 -538 261 0 0 0 chr11 33486135 33486164 -117297389 + (CAA)n Simple_repeat Simple_repeat 2 30 0 180 0 0 0 chr11 33486164 33486184 -117297369 + (A)n Simple_repeat Simple_repeat 1 20 0 2344 121 30 30 chr11 33486217 33486581 -117296972 - THE1B LTR MaLR 0 364 1 1047 270 124 39 chr11 33486607 33486995 -117296558 - MLT1L LTR MaLR -17 598 151 2501 102 34 11 chr11 33486995 33487349 -117296204 + THE1B LTR MaLR 1 362 -2 1047 270 124 39 chr11 33487349 33487494 -117296059 - MLT1L LTR MaLR -464 151 20 587 177 62 8 chr11 33487683 33487813 -117295740 - MER34B LTR ERV1 -5 560 424 694 291 54 25 chr11 33487825 33488141 -117295412 - LTR24B LTR ERV1 -7 569 245 435 171 2 30 chr11 33488214 33488308 -117295245 - LTR24B LTR ERV1 -367 98 9 885 203 27 0 chr11 33488318 33488505 -117295048 - MER34B LTR ERV1 -159 406 215 391 203 0 130 chr11 33488537 33488675 -117294878 - MER34B LTR ERV1 -440 125 6 1292 139 24 20 chr11 33488746 33489127 -117294426 + MLT2A2 LTR ERVL 170 453 0 610 231 88 114 chr11 33489191 33489602 -117293951 + MLT1H LTR MaLR 138 537 -12 891 252 33 0 chr11 33489695 33489905 -117293648 + U3 snRNA snRNA 1 217 0 306 250 103 5 chr11 33490042 33490192 -117293361 + L1ME4a LINE L1 1187 6110 -8 245 219 14 0 chr11 33490759 33490832 -117292721 + CT-rich Low_complexity Low_complexity 3 76 0 1553 195 5 76 chr11 33491620 33491919 -117291634 - MLT1B LTR MaLR 0 390 128 2028 140 0 13 chr11 33491919 33492226 -117291327 - AluJb SINE Alu -9 303 1 1553 195 5 76 chr11 33492226 33492346 -117291207 - MLT1B LTR MaLR -262 128 1 586 253 31 12 chr11 33492419 33492649 -117290904 - L1MEc LINE L1 -4780 1864 1518 303 233 83 33 chr11 33492776 33492896 -117290657 - L1MEc LINE L1 -5168 1657 1532 2764 251 149 11 chr11 33494104 33495046 -117288507 - L1MEc LINE L1 -5288 1537 466 378 265 49 0 chr11 33495066 33495168 -117288385 - L2 LINE L2 -2 3270 3164 265 156 0 0 chr11 33495388 33495433 -117288120 - L2 LINE L2 -221 3051 3007 799 227 178 27 chr11 33495501 33495726 -117287827 + MLT1L LTR MaLR 1 259 -356 566 234 15 7 chr11 33495796 33495933 -117287620 + MLT1L LTR MaLR 447 584 -31 221 329 0 24 chr11 33496566 33496651 -117286902 + CT-rich Low_complexity Low_complexity 1 83 0 256 239 34 34 chr11 33497034 33497122 -117286431 + L2 LINE L2 2977 3064 -208 218 196 143 0 chr11 33497209 33497265 -117286288 + L2 LINE L2 3208 3271 -1 306 340 0 0 chr11 33497299 33497399 -117286154 + L2 LINE L2 3172 3271 -1 2199 92 20 0 chr11 33497601 33497893 -117285660 - AluSq SINE Alu -15 298 1 736 179 168 6 chr11 33498056 33498229 -117285324 - MER3 DNA MER1_type -3 206 6 349 228 131 48 chr11 33498287 33498432 -117285121 + Charlie8 DNA MER1_type 72 228 -2189 25 0 0 0 chr11 33499575 33499600 -117283953 + GC_rich Low_complexity Low_complexity 1 25 0 2282 75 9 38 chr11 33499947 33500266 -117283287 + AluSx SINE Alu 3 312 0 237 291 38 25 chr11 33501201 33501280 -117282273 - L2 LINE L2 0 3313 3234 348 274 250 40 chr11 33502215 33502467 -117281086 + MER102b DNA MER1_type 1 305 -36 451 240 123 7 chr11 33502627 33502773 -117280780 - MIR SINE MIR -60 202 40 232 167 0 0 chr11 33502856 33502904 -117280649 - L2 LINE L2 0 3313 3266 218 192 39 0 chr11 33503034 33503086 -117280467 + L2 LINE L2 3194 3247 -25 1457 177 0 61 chr11 33503178 33503345 -117280208 - AluJo SINE Alu -14 298 155 2429 68 0 3 chr11 33503345 33503639 -117279914 - AluY SINE Alu -18 293 1 1457 177 0 61 chr11 33503639 33503765 -117279788 - AluJo SINE Alu -157 155 23 510 229 25 8 chr11 33504596 33504714 -117278839 + MIR3 SINE MIR 38 157 -51 486 296 47 18 chr11 33504717 33504886 -117278667 + MER117 DNA MER1_type 1 174 -23 250 280 27 0 chr11 33506613 33506688 -117276865 - MLT1J2 LTR MaLR -3 447 371 439 262 163 60 chr11 33506762 33506971 -117276582 - MLT1J1 LTR MaLR -168 278 37 2369 90 0 10 chr11 33506971 33507270 -117276283 + AluSg SINE Alu 3 298 -12 439 262 163 60 chr11 33507270 33507312 -117276241 - MLT1J1 LTR MaLR -409 37 1 394 301 34 20 chr11 33510114 33510260 -117273293 + MIR SINE MIR 56 203 -59 240 172 92 69 chr11 33510475 33510562 -117272991 + MIR SINE MIR 124 212 -50 536 299 103 13 chr11 33510588 33510822 -117272731 + MIR SINE MIR 8 262 0 258 224 56 40 chr11 33510831 33510956 -117272597 - MIR SINE MIR -23 239 113 259 278 186 37 chr11 33513758 33514053 -117269500 + L2 LINE L2 2804 3142 -171 1124 198 109 70 chr11 33514054 33514484 -117269069 - MLT1C LTR MaLR 0 467 21 371 285 91 30 chr11 33514510 33514675 -117268878 + L2 LINE L2 3137 3311 -2 258 309 53 22 chr11 33514767 33514861 -117268692 - MIR SINE MIR -103 105 12 249 210 25 37 chr11 33516272 33516353 -117267200 - MIR SINE MIR -29 233 154 435 244 11 3 chr11 33516363 33516481 -117267072 - MLT1I LTR MaLR -10 428 315 424 211 18 46 chr11 33516550 33516659 -117266894 - MLT1I LTR MaLR -243 166 61 196 186 169 0 chr11 33516702 33516761 -117266792 - MIR SINE MIR -115 147 79 1085 282 25 11 chr11 33516915 33517199 -117266354 + MER115 DNA AcHobo 88 375 -318 1800 192 8 47 chr11 33517204 33517273 -117266280 + MLT1A1 LTR MaLR 1 71 -294 2897 105 32 32 chr11 33517273 33517738 -117265815 - MER4C LTR ERV1 0 465 1 1800 192 8 47 chr11 33517738 33518048 -117265505 + MLT1A1 LTR MaLR 71 365 0 2052 112 0 17 chr11 33518220 33518543 -117265010 + AluSg SINE Alu 1 318 0 343 284 58 31 chr11 33518706 33518899 -117264654 + MIR SINE MIR 4 203 -59 269 274 38 38 chr11 33519278 33519384 -117264169 - MIR SINE MIR -67 141 36 275 319 33 0 chr11 33519391 33519482 -117264071 + MIR SINE MIR 118 211 -51 232 242 0 16 chr11 33519705 33519767 -117263786 + MIR SINE MIR 122 182 -80 374 273 30 0 chr11 33520442 33520541 -117263012 + MIR SINE MIR 28 129 -133 21 0 0 0 chr11 33520541 33520562 -117262991 + AT_rich Low_complexity Low_complexity 1 21 0 422 127 42 0 chr11 33520562 33520633 -117262920 - U3 snRNA snRNA -142 75 2 325 217 38 38 chr11 33520664 33520770 -117262783 + MIR SINE MIR 157 262 0 353 80 0 0 chr11 33520776 33520826 -117262727 + MADE1 DNA Mariner 31 80 0 401 271 138 24 chr11 33521321 33521568 -117261985 + L1ME4a LINE L1 5843 6117 -4 1061 188 18 23 chr11 33521720 33521938 -117261615 - MLT1A1 LTR MaLR -17 348 132 238 167 30 45 chr11 33521938 33522004 -117261549 - HSMAR1 DNA Mariner 0 1287 1223 386 43 0 0 chr11 33522017 33522064 -117261489 + MADE1 DNA Mariner 34 80 0 474 197 162 26 chr11 33522064 33522181 -117261372 - MLT1A1 LTR MaLR -232 133 1 441 301 72 14 chr11 33522432 33522641 -117260912 - MIR SINE MIR -14 248 28 22 35 0 0 chr11 33522861 33522890 -117260663 + AT_rich Low_complexity Low_complexity 1 29 0 557 297 44 69 chr11 33523242 33523649 -117259904 - L2 LINE L2 -1 3271 2875 303 267 114 111 chr11 33523714 33524047 -117259506 - L2 LINE L2 -527 2787 2454 1326 161 117 22 chr11 33524135 33524409 -117259144 + AluJb SINE Alu 1 300 -2 264 229 0 48 chr11 33524542 33524625 -117258928 - L2 LINE L2 -991 2323 2245 262 353 19 6 chr11 33525174 33525330 -117258223 - MER5B DNA MER1_type 0 178 21 * 287 308 23 15 chr11 33525198 33525331 -117258222 + MER5A DNA MER1_type 37 170 -19 295 253 110 0 chr11 33525353 33525444 -117258109 - MIR3 SINE MIR -49 159 59 1743 166 27 7 chr11 33525452 33525715 -117257838 + AluJo SINE Alu 12 283 -29 1049 74 0 7 chr11 33525715 33525864 -117257689 + (GGAA)n Simple_repeat Simple_repeat 2 149 0 1743 166 27 7 chr11 33525864 33525895 -117257658 + AluJo SINE Alu 283 312 0 974 186 0 38 chr11 33526661 33526844 -117256709 + FRAM SINE Alu 1 176 0 228 353 98 8 chr11 33527056 33527178 -117256375 + MIR SINE MIR 2 134 -128 2333 112 3 0 chr11 33527191 33527503 -117256050 - AluSq SINE Alu 0 313 1 239 273 39 0 chr11 33527506 33527583 -117255970 + MIR SINE MIR 124 203 -59 2448 131 69 5 chr11 33528201 33528607 -117254946 + MSTB1 LTR MaLR 1 432 0 1231 216 98 6 chr11 33528749 33529064 -117254489 - MER2 DNA MER2_type 0 344 1 292 305 193 17 chr11 33529110 33529467 -117254086 - L2 LINE L2 -384 2930 2511 537 274 153 13 chr11 33531280 33531587 -117251966 - L1ME4a LINE L1 -12 6109 5760 238 237 91 20 chr11 33531597 33531613 -117251940 - L1MD3 LINE L1 0 8041 8028 1959 168 3 0 chr11 33531613 33531922 -117251631 - AluJb SINE Alu -2 310 1 238 237 91 20 chr11 33531922 33532159 -117251394 - L1MD3 LINE L1 -13 8028 7789 220 340 52 0 chr11 33532265 33532362 -117251191 - L2 LINE L2 -32 3281 3180 255 203 0 0 chr11 33532504 33532563 -117250990 + (TG)n Simple_repeat Simple_repeat 1 59 0 401 258 0 69 chr11 33533019 33533178 -117250375 - MIR SINE MIR -66 196 49 1630 215 18 12 chr11 33533224 33533475 -117250078 + L1ME1 LINE L1 4922 5170 -1000 1475 147 67 135 chr11 33533475 33533876 -117249677 + MLT1A2 LTR MaLR 1 374 0 1630 215 18 12 chr11 33533876 33534192 -117249361 + L1ME1 LINE L1 5170 5489 -681 * 1796 315 15 14 chr11 33534189 33534773 -117248780 + L1PA16 LINE L1 1 585 -6202 15316 219 30 9 chr11 33534869 33539295 -117244258 + L1PA16 LINE L1 1324 5860 -937 1152 119 0 0 chr11 33539297 33539473 -117244080 + L1PA16 LINE L1 5960 6135 -682 4025 149 21 9 chr11 33539597 33539892 -117243661 + L1PA16 LINE L1 6137 6427 -390 513 0 0 0 chr11 33539892 33539949 -117243604 + (TA)n Simple_repeat Simple_repeat 1 57 0 4025 149 21 9 chr11 33539949 33540323 -117243230 + L1PA16 LINE L1 6427 6814 -3 2439 203 38 72 chr11 33540355 33540393 -117243160 + L1ME1 LINE L1 5471 5509 -657 2658 109 3 11 chr11 33540393 33540760 -117242793 + THE1B LTR MaLR 1 364 0 2439 203 38 72 chr11 33540760 33540981 -117242572 + L1ME1 LINE L1 5509 5736 -430 5259 94 8 1 chr11 33540981 33541706 -117241847 - L1PB2 LINE L1 -2 6149 5420 2439 203 38 72 chr11 33541706 33542158 -117241395 + L1ME1 LINE L1 5736 6159 -7 583 292 196 6 chr11 33543093 33543415 -117240138 - L2 LINE L2 0 3272 2890 2132 125 0 3 chr11 33543698 33543995 -117239558 - AluSx SINE Alu 0 312 17 320 206 0 0 chr11 33544061 33544124 -117239429 - MLT1K LTR MaLR -15 573 511 1611 168 112 3 chr11 33544132 33544453 -117239100 + L1MB3 LINE L1 5821 6176 -7 942 254 55 99 chr11 33544491 33544924 -117238629 - MLT1K LTR MaLR -112 476 63 183 327 91 27 chr11 33545250 33545360 -117238193 - L2 LINE L2 -582 2732 2616 529 292 30 67 chr11 33545361 33545690 -117237863 - L2 LINE L2 -849 2465 2149 848 280 22 0 chr11 33545884 33546109 -117237444 + LTR16C LTR ERVL 253 482 -9 2645 43 0 3 chr11 33546251 33546555 -117236998 + AluY SINE Alu 1 303 -8 1227 240 69 68 chr11 33546910 33547362 -117236191 + MLT1H LTR MaLR 41 545 -4 2216 105 58 28 chr11 33547454 33547817 -117235736 - THE1C LTR MaLR -1 374 1 212 258 45 34 chr11 33547894 33547983 -117235570 - MIR SINE MIR -24 238 149 1691 199 121 57 chr11 33548497 33548901 -117234652 - MER63C DNA MER1_type -142 918 541 1407 158 5 5 chr11 33548901 33549122 -117234431 - MER58A DNA MER1_type -3 221 1 1691 199 121 57 chr11 33549122 33549217 -117234336 - MER63C DNA MER1_type -519 541 453 1912 174 0 3 chr11 33549217 33549527 -117234026 - AluJb SINE Alu -3 309 1 1691 199 121 57 chr11 33549527 33549840 -117233713 - MER63C DNA MER1_type -607 453 55 286 321 170 9 chr11 33549978 33550090 -117233463 - MIR SINE MIR -115 147 18 504 114 0 0 chr11 33550774 33550844 -117232709 + THE1C LTR MaLR 272 341 -34 458 270 97 54 chr11 33550890 33551168 -117232385 - MLT1K LTR MaLR -14 574 285 2424 74 7 3 chr11 33551954 33552253 -117231300 - AluY SINE Alu -10 301 2 310 316 0 0 chr11 33553122 33553220 -117230333 + LTR29-int LTR ERV1 487 584 -6538 372 268 18 9 chr11 33553248 33553360 -117230193 + LTR29-int LTR ERV1 1505 1617 -5059 2135 140 30 33 chr11 33553661 33554026 -117229527 - THE1B LTR MaLR 0 364 1 273 180 0 0 chr11 33554204 33554254 -117229299 + LTR29-int LTR ERV1 2489 2538 -6440 254 213 0 0 chr11 33554992 33555039 -117228514 + LTR29-int LTR ERV1 3317 3363 -5615 592 319 58 18 chr11 33555752 33556094 -117227459 + LTR29-int LTR ERV1 2621 2976 -4146 677 170 0 0 chr11 33556095 33556201 -117227352 + AluJb SINE Alu 2 107 -205 550 271 51 71 chr11 33556206 33556449 -117227104 + LTR29-int LTR ERV1 4317 4552 -3874 2727 101 3 8 chr11 33556449 33556826 -117226727 - THE1C LTR MaLR 0 375 1 550 271 51 71 chr11 33556826 33556936 -117226617 + LTR29-int LTR ERV1 4552 4663 -3763 274 165 152 51 chr11 33556948 33557027 -117226526 + LTR29-int LTR ERV1 7730 7816 0 1735 176 231 53 chr11 33557952 33558480 -117225073 + LTR29 LTR ERV1 1 622 0 481 201 14 9 chr11 33558696 33558812 -117224741 - MIR SINE MIR -62 146 43 357 242 109 8 chr11 33559189 33559317 -117224236 + MIR SINE MIR 20 160 -102 201 100 0 0 chr11 33559849 33559879 -117223674 + L2 LINE L2 3267 3296 -17 213 333 11 21 chr11 33560847 33560940 -117222613 + L2 LINE L2 2967 3058 -214 184 209 0 0 chr11 33561158 33561201 -117222352 + L2 LINE L2 3269 3311 -2 237 259 0 17 chr11 33561516 33561574 -117221979 - LTR67 LTR ERVL 0 557 501 712 233 23 0 chr11 33561764 33561936 -117221617 - MER5A DNA MER1_type -12 177 2 1227 165 9 31 chr11 33562419 33562643 -117220910 + MER20 DNA MER1_type 1 219 0 565 241 115 11 chr11 33562743 33562934 -117220619 + MIR SINE MIR 48 258 -4 187 318 15 0 chr11 33563563 33563629 -117219924 - MIR3 SINE MIR 0 208 142 1645 174 10 39 chr11 33564071 33564381 -117219172 - AluJb SINE Alu -11 301 1 400 123 31 0 chr11 33564498 33564563 -117218990 + MER58 DNA MER1_type 2354 2420 0 243 267 59 20 chr11 33564591 33564692 -117218861 - L1MEc LINE L1 -4792 1604 1500 321 275 58 0 chr11 33564942 33565062 -117218491 - L1MEc LINE L1 -5096 1109 983 1023 198 20 20 chr11 33565324 33565521 -117218032 + MER20 DNA MER1_type 23 219 0 310 294 287 0 chr11 33566820 33566963 -117216590 + MER91A DNA MER1_type 8 191 -5 242 172 16 62 chr11 33567193 33567257 -117216296 + LTR67 LTR ERVL 483 543 -14 326 298 12 0 chr11 33567280 33567364 -117216189 + L2 LINE L2 3188 3272 0 2200 119 7 0 chr11 33567705 33568000 -117215553 + AluSx SINE Alu 1 297 -15 5463 136 30 24 chr11 33568000 33568895 -117214658 - MER49 LTR ERV1 -22 901 1 221 309 71 1 chr11 33568943 33569052 -117214501 - MIR SINE MIR -79 129 12 273 253 69 11 chr11 33570951 33571038 -117212515 + MIR SINE MIR 34 125 -137 325 73 0 0 chr11 33572117 33572158 -117211395 + 5S rRNA rRNA 2 42 -79 446 276 9 0 chr11 33572658 33572774 -117210779 + MER69A DNA AcHobo 2 118 -59 21 0 0 0 chr11 33572774 33572795 -117210758 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr11 33573267 33573296 -117210257 + AT_rich Low_complexity Low_complexity 1 29 0 298 292 31 39 chr11 33573557 33573687 -117209866 - MIR SINE MIR -70 192 64 2179 115 3 0 chr11 33573837 33574132 -117209421 + AluSx SINE Alu 1 296 -16 338 132 0 0 chr11 33575858 33575911 -117207642 + L2 LINE L2 3248 3300 -13 216 0 0 0 chr11 33575911 33575935 -117207618 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 222 232 130 0 chr11 33575971 33576040 -117207513 - MIR SINE MIR -140 122 45 195 327 211 0 chr11 33576101 33576205 -117207348 - L2 LINE L2 -9 3263 3138 956 150 237 23 chr11 33577231 33577497 -117206056 - MER33 DNA MER1_type -1 323 1 288 202 31 116 chr11 33577943 33578072 -117205481 - MLT1K LTR MaLR -2 586 469 450 278 83 57 chr11 33578192 33578422 -117205131 - MLT1K LTR MaLR -284 304 69 246 216 204 11 chr11 33579169 33579257 -117204296 + L2 LINE L2 3204 3308 -5 1453 51 0 0 chr11 33579776 33579951 -117203602 + AluY SINE Alu 137 311 0 288 319 57 28 chr11 33581737 33581878 -117201675 + MIR3 SINE MIR 30 174 -34 1583 193 41 0 chr11 33581933 33582108 -117201445 - AluJo SINE Alu -5 307 114 324 0 0 0 chr11 33582108 33582144 -117201409 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 1583 193 41 0 chr11 33582144 33582263 -117201290 - AluJo SINE Alu -198 114 1 2565 71 0 0 chr11 33582599 33582910 -117200643 - AluY SINE Alu 0 311 1 1943 169 3 6 chr11 33582924 33583237 -117200316 - AluJb SINE Alu 0 312 1 37 23 0 0 chr11 33585141 33585185 -117198368 + AT_rich Low_complexity Low_complexity 1 44 0 1960 151 0 0 chr11 33585449 33585759 -117197794 - AluSx SINE Alu 0 314 5 2278 96 0 26 chr11 33587583 33587885 -117195668 - AluSx SINE Alu -18 294 1 440 302 112 20 chr11 33588311 33588669 -117194884 + L1ME4a LINE L1 5558 5948 -173 1946 163 41 0 chr11 33588672 33588991 -117194562 + MER7A DNA MER2_type 17 346 0 233 330 34 11 chr11 33588991 33589167 -117194386 + L1ME4a LINE L1 5939 6118 -3 2210 97 38 0 chr11 33589258 33589424 -117194129 - AluSx SINE Alu -13 299 116 261 22 65 0 chr11 33589424 33589470 -117194083 + T-rich Low_complexity Low_complexity 2 50 0 2210 97 38 0 chr11 33589470 33589591 -117193962 - AluSx SINE Alu -196 116 1 715 252 147 72 chr11 33590259 33590728 -117192825 + MLT1J LTR MaLR 8 511 0 420 315 38 38 chr11 33591436 33591671 -117191882 - MIR SINE MIR 0 262 28 312 148 0 0 chr11 33592383 33592444 -117191109 + (TC)n Simple_repeat Simple_repeat 2 62 0 207 328 56 8 chr11 33593567 33593692 -117189861 + L2 LINE L2 3139 3269 -3 434 360 45 19 chr11 33594257 33594635 -117188918 + L2 LINE L2 2457 2844 -470 576 220 101 12 chr11 33595374 33595542 -117188011 + MIR SINE MIR 36 218 -44 2039 128 7 3 chr11 33595588 33595878 -117187675 - AluSx SINE Alu -21 291 1 592 311 104 0 chr11 33596115 33596337 -117187216 + MIR SINE MIR 6 250 -12 427 186 62 0 chr11 33596348 33596445 -117187108 - L2 LINE L2 -8 3305 3203 1298 136 4 53 chr11 33597547 33597775 -117185778 + MER20 DNA MER1_type 1 217 -2 2501 64 17 0 chr11 33598141 33598437 -117185116 - AluY SINE Alu -10 301 1 288 294 63 35 chr11 33598688 33598831 -117184722 + MIR SINE MIR 104 250 -12 296 285 40 117 chr11 33599516 33599609 -117183944 + MIR SINE MIR 33 132 -130 2108 134 0 28 chr11 33599609 33599929 -117183624 - AluJo SINE Alu -1 311 1 296 285 40 117 chr11 33599929 33599974 -117183579 + MIR SINE MIR 132 179 -83 2623 175 33 9 chr11 33599974 33600430 -117183123 + MLT1C LTR MaLR 1 467 0 296 285 40 117 chr11 33600430 33600539 -117183014 + MIR SINE MIR 179 262 0 248 275 43 0 chr11 33601416 33601485 -117182068 + L2 LINE L2 3000 3071 -201 617 266 90 65 chr11 33601649 33602266 -117181287 - L1ME4a LINE L1 -1 6120 5445 210 207 49 12 chr11 33602366 33602448 -117181105 + (TTATA)n Simple_repeat Simple_repeat 2 86 0 204 176 0 0 chr11 33602493 33602527 -117181026 - MIR SINE MIR -22 240 207 25 0 0 0 chr11 33602657 33602682 -117180871 + AT_rich Low_complexity Low_complexity 1 25 0 502 307 37 37 chr11 33602704 33602919 -117180634 - MIR SINE MIR -46 216 2 2240 103 10 0 chr11 33603322 33603622 -117179931 + AluY SINE Alu 1 303 -8 387 244 89 7 chr11 33603656 33603837 -117179716 - MIR SINE MIR -11 251 30 613 291 58 17 chr11 33604725 33604966 -117178587 - MIR SINE MIR -11 251 1 2471 187 63 73 chr11 33605111 33605127 -117178426 - MER63C DNA MER1_type -229 831 816 932 134 0 32 chr11 33605127 33605284 -117178269 + L1MA9 LINE L1 6159 6310 -2 2471 187 63 73 chr11 33605284 33605982 -117177571 - MER63C DNA MER1_type -244 816 124 540 163 203 0 chr11 33606017 33606140 -117177413 - MER63C DNA MER1_type -782 148 1 849 149 22 8 chr11 33606647 33606781 -117176772 + AluJo SINE Alu 1 136 -176 1626 193 13 10 chr11 33606787 33607098 -117176455 + AluJo SINE Alu 1 312 0 243 88 0 0 chr11 33608158 33608192 -117175361 + (A)n Simple_repeat Simple_repeat 1 34 0 3108 162 14 21 chr11 33609199 33609717 -117173836 + MLT2B2 LTR ERVL 2 515 0 397 236 22 0 chr11 33609874 33609963 -117173590 - MER94 DNA DNA -40 94 4 2235 95 17 7 chr11 33610088 33610383 -117173170 - AluJo SINE Alu -14 298 1 2151 126 0 3 chr11 33610648 33610950 -117172603 + AluSx SINE Alu 1 301 -11 1587 172 17 20 chr11 33611005 33611301 -117172252 + AluJo SINE Alu 1 295 -17 2094 112 0 17 chr11 33611332 33611627 -117171926 + AluSc SINE Alu 1 290 -19 353 254 115 0 chr11 33611792 33611914 -117171639 - MIR SINE MIR -41 221 86 2015 125 6 52 chr11 33612330 33612657 -117170896 - AluSx SINE Alu 0 312 1 1271 205 121 34 chr11 33612665 33613046 -117170507 - MLT2D LTR ERVL 0 414 1 347 271 75 19 chr11 33613563 33613670 -117169883 - MIR SINE MIR -121 141 29 231 88 0 0 chr11 33613949 33613983 -117169570 + (CA)n Simple_repeat Simple_repeat 1 34 0 246 32 0 0 chr11 33614405 33614436 -117169117 + (ATG)n Simple_repeat Simple_repeat 1 31 0 721 265 48 30 chr11 33614473 33614703 -117168850 - MIR SINE MIR -13 249 16 444 19 0 0 chr11 33614703 33614756 -117168797 + (TG)n Simple_repeat Simple_repeat 2 54 0 690 260 165 41 chr11 33615034 33615570 -117167983 + L2 LINE L2 2721 3306 -7 1771 152 14 24 chr11 33615701 33615998 -117167555 - AluJb SINE Alu -17 295 2 385 333 29 0 chr11 33616093 33616231 -117167322 - MIR3 SINE MIR -26 182 41 273 181 0 36 chr11 33616890 33616973 -117166580 + GA-rich Low_complexity Low_complexity 5 84 0 762 268 127 80 chr11 33617029 33617455 -117166098 + MLT1J LTR MaLR 1 507 -4 576 334 50 20 chr11 33617473 33617850 -117165703 + L2 LINE L2 1311 1702 -1612 243 0 0 0 chr11 33617850 33617877 -117165676 + (TAA)n Simple_repeat Simple_repeat 1 27 0 576 334 50 20 chr11 33617877 33617903 -117165650 + L2 LINE L2 1702 1726 -1588 343 259 101 22 chr11 33618107 33618246 -117165307 + MIR SINE MIR 39 188 -74 1265 242 83 54 chr11 33618263 33618796 -117164757 - LTR67 LTR ERVL -8 549 2 1864 149 0 20 chr11 33618888 33619189 -117164364 + AluJo SINE Alu 6 300 -12 2163 106 0 0 chr11 33619195 33619477 -117164076 + AluSx SINE Alu 18 299 -13 1704 151 17 20 chr11 33620089 33620207 -117163346 + AluJo SINE Alu 1 118 -194 471 18 0 0 chr11 33620207 33620263 -117163290 + (TA)n Simple_repeat Simple_repeat 2 57 0 1899 111 7 54 chr11 33620263 33620561 -117162992 - AluSx SINE Alu -28 284 1 1704 151 17 20 chr11 33620561 33620739 -117162814 + AluJo SINE Alu 116 297 -15 181 309 36 18 chr11 33620740 33620795 -117162758 - MIR SINE MIR -132 76 21 565 325 45 89 chr11 33621841 33622303 -117161250 - L2 LINE L2 0 3272 2831 21 0 0 0 chr11 33622853 33622874 -117160679 + AT_rich Low_complexity Low_complexity 1 21 0 767 229 64 0 chr11 33623520 33623708 -117159845 + MLT1J2 LTR MaLR 1 200 -250 1075 155 23 50 chr11 33623756 33623975 -117159578 + MER20 DNA MER1_type 1 213 -6 237 193 70 0 chr11 33623990 33624047 -117159506 + MLT1J1 LTR MaLR 271 331 -115 371 171 0 12 chr11 33624054 33624136 -117159417 + (CA)n Simple_repeat Simple_repeat 1 81 0 352 174 109 11 chr11 33624160 33624242 -117159311 + MLT1J2 LTR MaLR 360 446 0 2209 104 0 7 chr11 33625309 33625608 -117157945 + AluSx SINE Alu 1 297 -15 188 152 30 0 chr11 33625834 33625867 -117157686 - L2 LINE L2 -18 3254 3221 28 0 0 0 chr11 33626229 33626257 -117157296 + AT_rich Low_complexity Low_complexity 1 28 0 1664 159 17 41 chr11 33626307 33626416 -117157137 + AluJo SINE Alu 12 122 -190 2291 82 7 3 chr11 33626416 33626709 -117156844 - AluSp SINE Alu -19 294 1 1664 159 17 41 chr11 33626709 33626894 -117156659 + AluJo SINE Alu 122 299 -13 690 251 120 5 chr11 33626955 33627146 -117156407 - MIR SINE MIR -37 225 13 348 343 66 21 chr11 33627442 33627731 -117155822 + LTR16C LTR ERVL 190 491 0 2046 143 0 0 chr11 33627905 33628205 -117155348 - AluJb SINE Alu -7 305 6 818 214 6 19 chr11 33628212 33628371 -117155182 + MER58B DNA MER1_type 175 331 -10 2013 140 10 3 chr11 33628373 33628680 -117154873 + AluSx SINE Alu 1 309 -3 305 238 128 102 chr11 33629454 33629689 -117153864 - L2 LINE L2 -5 3267 3027 1583 176 61 0 chr11 33630350 33630628 -117152925 + AluJo SINE Alu 1 295 -17 392 239 143 57 chr11 33630660 33630869 -117152684 - MIR SINE MIR -34 228 2 180 0 0 0 chr11 33630881 33630901 -117152652 + (A)n Simple_repeat Simple_repeat 1 20 0 432 230 113 54 chr11 33631294 33631498 -117152055 + LTR33A LTR ERVL 1 216 -307 844 270 46 29 chr11 33631554 33631861 -117151692 + LTR33A LTR ERVL 210 521 -2 1615 75 232 0 chr11 33632111 33632352 -117151201 + AluSx SINE Alu 1 297 -15 583 309 56 28 chr11 33633263 33633515 -117150038 - MIR SINE MIR -3 259 1 1165 120 0 0 chr11 33635187 33635345 -117148208 - AluSq SINE Alu -20 293 136 4571 154 57 30 chr11 33635364 33635737 -117147816 + L1MB7 LINE L1 5147 5508 -676 2235 133 38 46 chr11 33635737 33636036 -117147517 + THE1B LTR MaLR 1 298 -66 2574 7 0 0 chr11 33636036 33636313 -117147240 - AluYa5 SINE Alu -2 309 33 2235 133 38 46 chr11 33636313 33636380 -117147173 + THE1B LTR MaLR 298 364 0 4571 154 57 30 chr11 33636380 33636998 -117146555 + L1MB7 LINE L1 5508 6168 -16 1134 276 38 0 chr11 33637001 33637262 -117146291 - LTR16C LTR ERVL -157 334 64 277 262 48 0 chr11 33637331 33637415 -117146138 + MIR SINE MIR 175 262 0 802 166 53 13 chr11 33638586 33638764 -117144789 - AluJb SINE Alu 0 312 137 279 0 0 0 chr11 33638903 33638934 -117144619 + (TG)n Simple_repeat Simple_repeat 2 32 0 2293 103 3 0 chr11 33638975 33639286 -117144267 - AluSp SINE Alu -1 312 1 904 257 120 22 chr11 33639378 33639802 -117143751 - L1ME4a LINE L1 -175 5946 5480 1742 179 0 29 chr11 33640607 33640919 -117142634 + AluJo SINE Alu 1 303 -9 6023 223 100 30 chr11 33641049 33641274 -117142279 + L1MC4 LINE L1 5254 5462 -2580 1311 191 167 8 chr11 33641274 33641531 -117142022 + AluJb SINE Alu 1 298 -4 6023 223 100 30 chr11 33641531 33642049 -117141504 + L1MC4 LINE L1 5462 5943 -2099 302 0 26 0 chr11 33642049 33642087 -117141466 + (ATG)n Simple_repeat Simple_repeat 1 39 0 6023 223 100 30 chr11 33642087 33643542 -117140011 + L1MC4 LINE L1 5943 7765 -277 1380 232 138 49 chr11 33643542 33644055 -117139498 + MER34B LTR ERV1 4 562 -3 6023 223 100 30 chr11 33644055 33644348 -117139205 + L1MC4 LINE L1 7765 8036 -6 1549 271 92 50 chr11 33644425 33644796 -117138757 + L1ME3A LINE L1 916 1270 -4859 1774 167 0 10 chr11 33644796 33645101 -117138452 + AluJo SINE Alu 1 302 -10 1549 271 92 50 chr11 33645101 33646197 -117137356 + L1ME3A LINE L1 1270 2449 -3680 633 285 47 0 chr11 33646307 33646521 -117137032 + L1ME3A LINE L1 2634 2857 -3272 2551 123 20 27 chr11 33646528 33646936 -117136617 + MSTB1 LTR MaLR 15 419 -13 702 260 56 39 chr11 33646948 33647239 -117136314 + L1ME3A LINE L1 2862 3164 -2965 1130 246 9 0 chr11 33647239 33647459 -117136094 - MER58A DNA MER1_type -1 223 2 702 260 56 39 chr11 33647459 33647579 -117135974 + L1ME3A LINE L1 3164 3280 -2849 21 71 0 0 chr11 33647579 33647621 -117135932 + AT_rich Low_complexity Low_complexity 1 42 0 1850 147 0 39 chr11 33647660 33647803 -117135750 + AluJb SINE Alu 1 127 -185 1278 66 6 6 chr11 33647803 33647969 -117135584 + L1PA6 LINE L1 5982 6147 -7 1850 147 0 39 chr11 33647969 33648131 -117135422 + AluJb SINE Alu 127 294 -18 326 217 33 42 chr11 33648132 33648252 -117135301 + L1ME3A LINE L1 3324 3442 -2687 611 70 0 0 chr11 33648383 33648478 -117135075 + AluSp/q SINE Alu 216 310 0 1643 245 78 56 chr11 33648479 33649307 -117134246 + L1ME3A LINE L1 4251 5097 -1032 1116 94 12 6 chr11 33649306 33649476 -117134077 + L1MA8 LINE L1 5992 6162 -129 * 779 117 66 15 chr11 33649529 33649666 -117133887 + L1MA8 LINE L1 6144 6287 -4 2890 243 75 21 chr11 33649768 33650266 -117133287 + L1ME3A LINE L1 5237 5803 -350 399 89 0 0 chr11 33650266 33650322 -117133231 + (TGAA)n Simple_repeat Simple_repeat 2 57 0 2890 243 75 21 chr11 33650322 33650685 -117132868 + L1ME3A LINE L1 5803 6145 -8 27 0 0 0 chr11 33652330 33652357 -117131196 + AT_rich Low_complexity Low_complexity 1 27 0 367 314 95 0 chr11 33652832 33652969 -117130584 + L2 LINE L2 2904 3053 -219 439 248 74 78 chr11 33653038 33653308 -117130245 - L2 LINE L2 -48 3265 2997 297 357 103 0 chr11 33653364 33653490 -117130063 + L2 LINE L2 3133 3271 -1 391 229 50 101 chr11 33653620 33653799 -117129754 + Charlie7 DNA MER1_type 1 170 -2442 1645 149 9 62 chr11 33653933 33654254 -117129299 - AluJo SINE Alu -8 304 1 4971 108 51 23 chr11 33654308 33655125 -117128428 - Tigger3(Golem) DNA MER2_type 0 3029 2190 332 182 61 121 chr11 33655200 33655332 -117128221 + MLT1J LTR MaLR 236 359 -152 1325 171 120 0 chr11 33655436 33655711 -117127842 - AluSx SINE Alu -2 310 3 665 226 25 6 chr11 33655723 33655882 -117127671 + Charlie7 DNA MER1_type 845 1006 -1606 2248 65 0 31 chr11 33655944 33656280 -117127273 - AluY SINE Alu 0 327 1 279 253 137 53 chr11 33656702 33656892 -117126661 + L2 LINE L2 3108 3313 0 2472 30 40 10 chr11 33656924 33657225 -117126328 + AluY SINE Alu 1 310 -1 295 161 16 0 chr11 33657242 33657304 -117126249 + L1MA8 LINE L1 6227 6289 -2 204 286 36 0 chr11 33658282 33658338 -117125215 + MIR SINE MIR 93 150 -112 * 479 279 199 43 chr11 33658332 33658654 -117124899 + L3 LINE CR1 810 1181 -396 1099 149 12 18 chr11 33658933 33659101 -117124452 + FAM SINE Alu 4 170 -5 183 328 82 0 chr11 33659378 33659439 -117124114 - L2 LINE L2 -55 3258 3193 290 292 22 0 chr11 33659472 33659561 -117123992 + L3 LINE CR1 1187 1277 -300 542 272 102 68 chr11 33659682 33659917 -117123636 + MIR SINE MIR 2 244 -18 1865 133 40 10 chr11 33660003 33660304 -117123249 - AluSx SINE Alu -2 310 1 1681 156 9 75 chr11 33661335 33661669 -117121884 + AluJo SINE Alu 1 312 0 21 0 0 0 chr11 33664126 33664147 -117119406 + AT_rich Low_complexity Low_complexity 1 21 0 501 194 21 90 chr11 33664850 33664994 -117118559 + MER103 DNA DNA 14 147 -19 480 171 23 0 chr11 33665000 33665088 -117118465 + L2 LINE L2 3224 3313 0 210 240 100 0 chr11 33666206 33666256 -117117297 - L2 LINE L2 -15 3257 3203 419 264 24 40 chr11 33666359 33666484 -117117069 - MIR SINE MIR -132 130 8 198 0 0 0 chr11 33666804 33666826 -117116727 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 1473 169 0 4 chr11 33666833 33667070 -117116483 - AluJb SINE Alu -76 236 1 2052 269 30 34 chr11 33667395 33667989 -117115564 - MLT1E LTR MaLR -1 592 1 2370 68 3 0 chr11 33668008 33668301 -117115252 - AluY SINE Alu -17 294 1 1618 174 166 14 chr11 33669246 33669590 -117113963 - MSTD LTR MaLR 0 396 1 6952 216 74 44 chr11 33669590 33671274 -117112279 - MSTD-int LTR MaLR 0 1735 1 997 143 14 0 chr11 33671274 33671421 -117112132 - MSTD LTR MaLR 0 396 248 1815 146 14 0 chr11 33671423 33671704 -117111849 + MER49 LTR ERV1 1 285 -638 1494 211 8 50 chr11 33671734 33672094 -117111459 + MER4D LTR ERV1 549 893 -10 1282 177 59 13 chr11 33672102 33672339 -117111214 - MSTD LTR MaLR -147 249 2 304 345 97 15 chr11 33672383 33672589 -117110964 - L2 LINE L2 -258 3055 2833 236 353 59 17 chr11 33672601 33672720 -117110833 - L2 LINE L2 -647 2667 2544 2707 19 7 3 chr11 33673040 33673349 -117110204 + AluY SINE Alu 2 311 0 377 306 67 8 chr11 33673361 33673495 -117110058 - MIR3 SINE MIR -29 179 38 1273 148 28 106 chr11 33675379 33675662 -117107891 + AluJo SINE Alu 23 283 -29 186 43 0 0 chr11 33675662 33675685 -117107868 + (TGAA)n Simple_repeat Simple_repeat 2 24 0 342 49 0 0 chr11 33676496 33676537 -117107016 + L1PA16 LINE L1 5745 5785 -380 1437 149 88 54 chr11 33676541 33676836 -117106717 + AluJb SINE Alu 7 311 -1 228 163 0 0 chr11 33676851 33676894 -117106659 + G-rich Low_complexity Low_complexity 4 46 0 285 188 0 0 chr11 33676895 33676943 -117106610 + GA-rich Low_complexity Low_complexity 3 50 0 844 126 11 33 chr11 33676943 33677125 -117106428 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 2603 138 3 3 chr11 33677133 33677524 -117106029 + L1PA16 LINE L1 5770 6160 -6 23 0 0 0 chr11 33677570 33677593 -117105960 + AT_rich Low_complexity Low_complexity 1 23 0 2112 154 89 16 chr11 33679187 33679556 -117103997 + MSTD LTR MaLR 1 396 0 2188 128 0 7 chr11 33680159 33680463 -117103090 - AluSg SINE Alu -8 302 1 427 232 126 53 chr11 33680892 33681043 -117102510 + MIR3 SINE MIR 45 206 -2 2381 97 0 0 chr11 33681162 33681461 -117102092 + AluSg SINE Alu 1 299 -11 929 304 83 54 chr11 33681885 33682402 -117101151 - MLT1H LTR MaLR -15 534 3 341 250 122 67 chr11 33682579 33682743 -117100810 + MIR SINE MIR 16 188 -74 6127 173 20 14 chr11 33682763 33683424 -117100129 - Tigger6a DNA MER2_type -514 1083 411 2249 107 0 28 chr11 33683424 33683742 -117099811 - AluSc SINE Alu 0 309 1 6127 173 20 14 chr11 33683742 33684156 -117099397 - Tigger6a DNA MER2_type -1186 411 1 1006 301 53 28 chr11 33684530 33684926 -117098627 + MLT1J LTR MaLR 14 419 -92 1843 39 0 87 chr11 33684951 33685205 -117098348 - AluSc SINE Alu -2 307 76 727 291 124 34 chr11 33685441 33685988 -117097565 + L3 LINE CR1 819 1453 -124 227 290 32 86 chr11 33686118 33686181 -117097372 + L3 LINE CR1 1481 1546 -31 198 0 0 0 chr11 33686181 33686203 -117097350 + (TG)n Simple_repeat Simple_repeat 1 22 0 2088 126 0 0 chr11 33686203 33686480 -117097073 - AluSx SINE Alu -31 281 5 227 290 32 86 chr11 33686480 33686508 -117097045 + L3 LINE CR1 1544 1568 -9 694 315 139 20 chr11 33686609 33686961 -117096592 - MLT1K LTR MaLR 0 588 195 563 294 37 6 chr11 33688698 33688861 -117094692 - MIR SINE MIR -74 188 21 369 262 165 37 chr11 33688887 33689051 -117094502 - MIR SINE MIR -49 213 29 993 256 135 58 chr11 33689066 33689369 -117094184 + MLT1J LTR MaLR 1 354 -157 2172 123 0 7 chr11 33689369 33689671 -117093882 + AluSx SINE Alu 4 303 -9 993 256 135 58 chr11 33689671 33689835 -117093718 + MLT1J LTR MaLR 354 504 -7 21 36 0 0 chr11 33690534 33690562 -117092991 + AT_rich Low_complexity Low_complexity 1 28 0 2041 146 3 3 chr11 33690571 33690872 -117092681 + AluJb SINE Alu 1 301 -11 239 250 106 43 chr11 33690912 33691120 -117092433 + L1ME LINE L1 5602 5822 -299 11613 167 12 12 chr11 33691273 33691542 -117092011 + L1PA15 LINE L1 2947 3215 -2950 2178 104 0 24 chr11 33691542 33691840 -117091713 + AluSx SINE Alu 1 291 -21 11613 167 12 12 chr11 33691840 33694627 -117088926 + L1PA15 LINE L1 3215 6134 -31 193 28 0 56 chr11 33694627 33694663 -117088890 + (TAAAA)n Simple_repeat Simple_repeat 1 34 0 503 271 50 52 chr11 33694672 33695034 -117088519 + L1MC5 LINE L1 7377 7737 -224 323 258 23 39 chr11 33695028 33695156 -117088397 + L1MC5 LINE L1 7658 7783 -178 * 555 289 14 66 chr11 33695195 33695406 -117088147 + MIR SINE MIR 20 219 -43 299 351 80 7 chr11 33696104 33696255 -117087298 + MER5B DNA MER1_type 1 162 -16 2383 154 61 7 chr11 33696630 33697040 -117086513 + MSTB1 LTR MaLR 1 432 0 257 0 30 0 chr11 33697693 33697726 -117085827 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 1967 163 0 3 chr11 33697904 33698217 -117085336 + AluJb SINE Alu 1 312 0 239 164 91 0 chr11 33698689 33698744 -117084809 - L2 LINE L2 0 3313 3254 * 445 290 35 14 chr11 33698739 33698884 -117084669 + L2 LINE L2 2832 2979 -293 299 320 240 5 chr11 33698918 33699118 -117084435 + L2 LINE L2 2937 3183 -89 244 291 47 87 chr11 33699139 33699266 -117084287 + MIR SINE MIR 12 133 -129 312 182 102 31 chr11 33699266 33699377 -117084176 + L1M2 LINE L1 5658 5782 -509 1232 142 76 5 chr11 33699377 33699588 -117083965 + AluJo SINE Alu 84 309 -3 2125 179 29 11 chr11 33699589 33699968 -117083585 + L1PB4 LINE L1 5769 6154 -2 282 206 0 55 chr11 33699986 33700059 -117083494 + MIR SINE MIR 184 252 -10 2037 140 0 10 chr11 33700084 33700391 -117083162 + AluSx SINE Alu 7 310 -2 230 212 91 0 chr11 33700445 33700511 -117083042 + L1ME LINE L1 5195 5266 -880 606 274 137 57 chr11 33700529 33700661 -117082892 + L1ME LINE L1 5262 5382 -780 1351 181 87 32 chr11 33700661 33700938 -117082615 + AluJb SINE Alu 1 292 -20 2286 89 0 3 chr11 33700940 33701232 -117082321 + AluSc SINE Alu 15 305 -4 606 274 137 57 chr11 33701232 33701556 -117081997 + L1ME LINE L1 5382 5758 -404 1248 198 65 0 chr11 33702015 33702143 -117081410 - AluJo SINE Alu -49 263 145 405 0 0 0 chr11 33702143 33702188 -117081365 + (TTTA)n Simple_repeat Simple_repeat 3 47 0 1248 198 65 0 chr11 33702188 33702306 -117081247 - AluJo SINE Alu -167 145 1 266 313 21 0 chr11 33702350 33702446 -117081107 + (TGGA)n Simple_repeat Simple_repeat 4 101 0 258 136 23 0 chr11 33702558 33702602 -117080951 - MER91C DNA MER1_type -64 76 32 1134 124 57 11 chr11 33702859 33703169 -117080384 - THE1C LTR MaLR 0 375 1 336 24 0 0 chr11 33703598 33703639 -117079914 + (CA)n Simple_repeat Simple_repeat 2 42 0 943 268 143 36 chr11 33703673 33704172 -117079381 - MLT1H LTR MaLR 0 549 1 288 286 286 10 chr11 33706605 33706797 -117076756 - MIR SINE MIR -4 258 14 224 205 0 0 chr11 33707171 33707210 -117076343 + MIR SINE MIR 83 121 -87 2716 90 8 11 chr11 33707393 33707769 -117075784 + THE1C LTR MaLR 1 375 0 26 30 0 0 chr11 33708440 33708473 -117075080 + AT_rich Low_complexity Low_complexity 1 33 0 369 231 52 45 chr11 33708744 33708878 -117074675 + L1ME4a LINE L1 5959 6093 -28 3966 157 12 44 chr11 33708973 33709743 -117073810 + L1MB8 LINE L1 5429 6173 -5 290 226 19 138 chr11 33710161 33710320 -117073233 - MER5A DNA MER1_type 0 189 50 305 309 24 8 chr11 33710622 33710745 -117072808 - MIR3 SINE MIR -10 198 74 1816 124 43 43 chr11 33711281 33711413 -117072140 + AluSx SINE Alu 1 132 -180 2591 60 0 0 chr11 33711413 33711711 -117071842 + AluY SINE Alu 1 298 -13 1816 124 43 43 chr11 33711711 33711890 -117071663 + AluSx SINE Alu 131 312 0 25 0 0 0 chr11 33712051 33712076 -117071477 + AT_rich Low_complexity Low_complexity 1 25 0 296 295 0 0 chr11 33712272 33712350 -117071203 - MIR SINE MIR -143 119 42 275 198 136 12 chr11 33713350 33713431 -117070122 + L2 LINE L2 3223 3313 0 280 165 9 156 chr11 33713635 33713686 -117069867 - MARNA DNA Mariner -15 571 543 2095 126 24 0 chr11 33713686 33713980 -117069573 + AluSx SINE Alu 1 301 -11 280 165 9 156 chr11 33713980 33714037 -117069516 - MARNA DNA Mariner -43 543 479 449 230 72 20 chr11 33714169 33714321 -117069232 - MIR3 SINE MIR -8 200 41 372 200 21 50 chr11 33714582 33714687 -117068866 + MER113 DNA MER1_type? 1 103 -418 1993 139 0 26 chr11 33714687 33714996 -117068557 - AluJb SINE Alu -11 301 1 372 200 21 50 chr11 33714996 33715030 -117068523 + MER113 DNA MER1_type? 103 136 -385 2379 76 0 0 chr11 33716256 33716545 -117067008 - AluY SINE Alu -22 289 1 313 253 0 0 chr11 33716581 33716656 -117066897 - MIR SINE MIR 0 262 188 246 267 78 0 chr11 33716747 33716837 -117066716 + MIR3 SINE MIR 66 162 -46 288 237 153 46 chr11 33716840 33716971 -117066582 + MER117 DNA MER1_type 6 150 -47 815 209 9 53 chr11 33717237 33717462 -117066091 - L1MC5 LINE L1 -58 7903 7689 32 26 0 0 chr11 33718132 33718171 -117065382 + AT_rich Low_complexity Low_complexity 1 39 0 2011 129 4 0 chr11 33718886 33719166 -117064387 - AluSg SINE Alu -5 305 25 262 152 134 152 chr11 33719171 33719283 -117064270 - MIR SINE MIR -70 192 83 2378 89 0 0 chr11 33721969 33722260 -117061293 + AluSg SINE Alu 1 291 -19 181 224 41 20 chr11 33722284 33722333 -117061220 + MIR3 SINE MIR 108 157 -51 518 329 87 21 chr11 33722665 33722951 -117060602 - L3 LINE CR1 -582 995 691 238 295 62 9 chr11 33723120 33723232 -117060321 + MIR SINE MIR 10 127 -135 480 345 42 0 chr11 33723256 33723472 -117060081 - MIR SINE MIR 0 262 39 419 209 0 0 chr11 33723705 33723796 -117059757 + MIR SINE MIR 69 159 -103 237 143 32 16 chr11 33723878 33723941 -117059612 + (TTATA)n Simple_repeat Simple_repeat 1 64 0 213 163 0 20 chr11 33724134 33724183 -117059370 + MIR SINE MIR 159 206 -56 290 306 65 16 chr11 33725315 33725439 -117058114 + MIR3 SINE MIR 28 157 -51 367 257 38 55 chr11 33727061 33727246 -117056307 - MIR SINE MIR -65 143 10 2044 125 7 0 chr11 33727408 33727729 -117055824 + AluSq SINE Alu 2 324 0 1733 148 0 84 chr11 33729271 33729399 -117054154 + AluJo SINE Alu 1 138 -174 243 0 0 0 chr11 33729399 33729426 -117054127 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1733 148 0 84 chr11 33729426 33729451 -117054102 + AluJo SINE Alu 138 164 -148 1965 130 0 11 chr11 33729451 33729728 -117053825 + AluSq SINE Alu 1 274 -39 1733 148 0 84 chr11 33729728 33729905 -117053648 + AluJo SINE Alu 164 304 -8 237 269 0 0 chr11 33730443 33730495 -117053058 + L2 LINE L2 2594 2645 -669 2410 95 0 7 chr11 33730714 33731020 -117052533 + AluSg SINE Alu 1 304 -6 2015 75 10 78 chr11 33731173 33731466 -117052087 - AluSx SINE Alu -2 310 38 278 238 126 58 chr11 33731793 33732054 -117051499 + L1ME4a LINE L1 5843 6121 0 2457 197 20 18 chr11 33732190 33732687 -117050866 - MER119 DNA MER1_type 0 583 86 2439 60 0 32 chr11 33732687 33733001 -117050552 + AluSg SINE Alu 1 304 -6 255 79 0 0 chr11 33733030 33733068 -117050485 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 2551 144 7 16 chr11 33733759 33734001 -117049552 + L1MB3 LINE L1 5728 5966 -217 2483 83 0 0 chr11 33734001 33734301 -117049252 + AluSg SINE Alu 1 300 -10 2551 144 7 16 chr11 33734301 33734503 -117049050 + L1MB3 LINE L1 5966 6168 -15 407 327 53 35 chr11 33735282 33735621 -117047932 + L2 LINE L2 2414 2758 -556 228 303 11 45 chr11 33736042 33736131 -117047422 + L2 LINE L2 3187 3272 0 469 202 22 0 chr11 33736326 33736415 -117047138 - Tigger5 DNA MER2_type 0 2323 2233 * 1973 164 19 115 chr11 33736414 33736747 -117046806 + MER101 LTR ERV1 11 374 -100 1600 87 50 9 chr11 33736747 33736965 -117046588 + AluSc SINE Alu 71 297 -12 2050 100 43 0 chr11 33736967 33737246 -117046307 + AluSq SINE Alu 1 291 -22 1973 164 19 115 chr11 33737246 33737291 -117046262 + MER101 LTR ERV1 375 423 -51 1502 109 9 5 chr11 33737291 33737501 -117046052 + AluSc SINE Alu 83 293 -16 1973 164 19 115 chr11 33737501 33737631 -117045922 + MER101 LTR ERV1 423 474 0 276 111 0 93 chr11 33737631 33737679 -117045874 - Tigger5 DNA MER2_type -86 2237 2195 506 202 161 8 chr11 33737693 33737817 -117045736 - Tigger5 DNA MER2_type -2150 173 31 382 188 21 21 chr11 33738584 33738680 -117044873 - MIR SINE MIR -25 237 142 261 246 14 43 chr11 33738814 33738883 -117044670 - L2 LINE L2 -1 3271 3205 21 0 0 0 chr11 33739735 33739756 -117043797 + AT_rich Low_complexity Low_complexity 1 21 0 248 290 57 32 chr11 33739814 33739938 -117043615 - L2 LINE L2 -65 3248 3122 310 181 106 32 chr11 33739974 33740068 -117043485 - L2 LINE L2 -287 3026 2926 1765 126 4 4 chr11 33740113 33740360 -117043193 + AluSq SINE Alu 1 247 -66 817 129 16 0 chr11 33740360 33740484 -117043069 + AluSg/x SINE Alu 181 306 -4 2642 185 47 48 chr11 33742658 33743479 -117040074 - LTR27 LTR ERV1 -10 1010 3 1891 158 10 3 chr11 33743484 33743787 -117039766 + AluJo SINE Alu 1 305 -7 564 282 28 14 chr11 33744426 33744642 -117038911 + L1ME4a LINE L1 5642 5860 -261 2383 67 37 3 chr11 33744684 33744984 -117038569 - AluY SINE Alu -1 310 1 26 0 0 0 chr11 33744985 33745011 -117038542 + AT_rich Low_complexity Low_complexity 1 26 0 1126 227 328 0 chr11 33745015 33745490 -117038063 + HAL1 LINE L1 177 807 -1700 893 172 53 0 chr11 33745495 33745646 -117037907 - AluJb SINE Alu -17 295 137 662 251 104 108 chr11 33745646 33746080 -117037473 + HAL1 LINE L1 798 1232 -1275 2219 123 10 0 chr11 33746080 33746381 -117037172 - AluSq SINE Alu -9 304 1 662 251 104 108 chr11 33746381 33746413 -117037140 + HAL1 LINE L1 1232 1263 -1244 2204 103 0 4 chr11 33746413 33746694 -117036859 + AluSg SINE Alu 11 290 -20 662 251 104 108 chr11 33746694 33746717 -117036836 + HAL1 LINE L1 1263 1285 -1222 2901 10 0 0 chr11 33746717 33747026 -117036527 + AluYa5 SINE Alu 1 309 -2 662 251 104 108 chr11 33747026 33747084 -117036469 + HAL1 LINE L1 1285 1342 -1165 2173 96 4 0 chr11 33747084 33747401 -117036152 + AluSg SINE Alu 1 318 0 662 251 104 108 chr11 33747401 33747598 -117035955 + HAL1 LINE L1 1342 1543 -964 819 230 71 0 chr11 33747619 33747815 -117035738 - MIR SINE MIR -28 234 25 1400 238 73 66 chr11 33747838 33747949 -117035604 + HAL1 LINE L1 1543 1652 -855 225 0 0 0 chr11 33747949 33747974 -117035579 + (TG)n Simple_repeat Simple_repeat 2 26 0 1400 238 73 66 chr11 33747974 33748667 -117034886 + HAL1 LINE L1 1652 2507 0 480 226 56 72 chr11 33749181 33749376 -117034177 - MLT1K LTR MaLR -1 587 396 230 136 23 0 chr11 33749463 33749507 -117034046 - MLT1K LTR MaLR -395 193 149 639 239 97 92 chr11 33750641 33751022 -117032531 + MLT1J LTR MaLR 110 492 -19 687 296 106 55 chr11 33751155 33751591 -117031962 + MLT1K LTR MaLR 125 582 -6 597 264 28 0 chr11 33751795 33751977 -117031576 + MIR SINE MIR 73 259 -3 2192 83 3 64 chr11 33752123 33752449 -117031104 + AluY SINE Alu 1 306 -5 337 243 0 129 chr11 33753727 33753867 -117029686 - MIR SINE MIR -19 243 122 1124 222 101 11 chr11 33754510 33754935 -117028618 + MER113 DNA MER1_type? 16 521 0 528 219 44 18 chr11 33755005 33755119 -117028434 + MIR3 SINE MIR 73 189 -19 349 278 159 66 chr11 33755517 33755744 -117027809 + MIR SINE MIR 13 260 -2 1625 181 16 0 chr11 33755778 33756082 -117027471 - AluJb SINE Alu -3 309 1 1441 84 5 0 chr11 33756934 33757124 -117026429 - AluSp SINE Alu -10 303 113 292 384 9 0 chr11 33757316 33757428 -117026125 - L2 LINE L2 -5 3267 3155 290 291 32 111 chr11 33757484 33757673 -117025880 + MIR SINE MIR 75 248 -14 31 26 0 0 chr11 33757716 33757754 -117025799 + AT_rich Low_complexity Low_complexity 1 38 0 353 317 125 56 chr11 33758616 33758935 -117024618 - L2 LINE L2 -4 3268 2928 2175 117 7 0 chr11 33758981 33759288 -117024265 + AluSx SINE Alu 1 309 -3 363 244 160 23 chr11 33760212 33760343 -117023210 - MER5A DNA MER1_type 0 189 41 946 231 48 15 chr11 33760344 33760816 -117022737 - MLT1F1 LTR MaLR -1 566 1 572 298 92 9 chr11 33760869 33760949 -117022604 + MIR SINE MIR 16 88 -174 2205 84 20 0 chr11 33760949 33761246 -117022307 + AluSx SINE Alu 1 303 -9 572 298 92 9 chr11 33761246 33761393 -117022160 + MIR SINE MIR 88 262 0 379 297 10 10 chr11 33761697 33761798 -117021755 + MER5A DNA MER1_type 89 189 0 191 35 0 35 chr11 33762641 33762670 -117020883 + (TTCA)n Simple_repeat Simple_repeat 3 30 0 236 241 120 95 chr11 33762677 33762835 -117020718 - L2 LINE L2 -19 3294 3133 2266 93 7 0 chr11 33763716 33764018 -117019535 - AluSp SINE Alu -9 304 1 23 33 0 0 chr11 33764025 33764055 -117019498 + AT_rich Low_complexity Low_complexity 1 30 0 433 305 35 23 chr11 33765383 33765557 -117017996 - MIR SINE MIR -66 196 21 787 308 21 4 chr11 33765717 33765957 -117017596 - MIR SINE MIR -10 252 9 946 157 24 0 chr11 33767486 33767652 -117015901 + L1MB5 LINE L1 5721 5890 -284 2058 115 0 14 chr11 33767736 33768032 -117015521 + AluSx SINE Alu 1 292 -20 688 268 12 0 chr11 33768036 33768204 -117015349 + L2 LINE L2 2534 2703 -611 2949 151 39 19 chr11 33768206 33768777 -117014776 - L1MB5 LINE L1 0 6174 5593 695 95 29 0 chr11 33768777 33768876 -117014677 - L1MA4A LINE L1 -5 6298 6191 2351 73 0 3 chr11 33768928 33769229 -117014324 + AluY SINE Alu 1 300 -11 212 203 34 0 chr11 33769232 33769357 -117014196 + (TA)n Simple_repeat Simple_repeat 1 129 0 1887 136 31 0 chr11 33769357 33769643 -117013910 - AluSx SINE Alu -17 295 1 2062 122 0 13 chr11 33770331 33770610 -117012943 + AluSc SINE Alu 1 277 -32 185 0 40 0 chr11 33770610 33770635 -117012918 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2062 122 0 13 chr11 33770635 33770667 -117012886 + AluSc SINE Alu 277 308 -1 276 329 0 0 chr11 33770824 33770897 -117012656 - L2 LINE L2 -21 3251 3179 2047 168 139 22 chr11 33770901 33771353 -117012200 - MLT1D LTR MaLR 0 505 1 1207 106 6 0 chr11 33771501 33771671 -117011882 + AluSg/x SINE Alu 137 307 -5 263 242 219 29 chr11 33771806 33772036 -117011517 - L2 LINE L2 -484 2830 2645 1939 123 0 28 chr11 33772036 33772353 -117011200 - AluSx SINE Alu -2 310 3 263 242 219 29 chr11 33772353 33772473 -117011080 - L2 LINE L2 -669 2645 2413 392 258 11 0 chr11 33772558 33772651 -117010902 + MIR SINE MIR 169 262 0 2901 169 15 78 chr11 33772963 33773519 -117010034 - LTR9 LTR ERV1 0 612 101 2077 61 79 0 chr11 33773519 33773799 -117009754 + AluSq SINE Alu 1 302 -11 2901 169 15 78 chr11 33773799 33773895 -117009658 - LTR9 LTR ERV1 -511 101 1 2227 90 0 6 chr11 33773948 33774260 -117009293 - AluY SINE Alu -1 310 1 2077 118 0 16 chr11 33775290 33775596 -117007957 + AluSc SINE Alu 1 301 -8 243 109 236 0 chr11 33775734 33775789 -117007764 - THE1B LTR MaLR 0 375 308 2000 128 53 35 chr11 33775854 33776173 -117007380 - THE1B LTR MaLR -39 325 1 11907 91 9 9 chr11 33776173 33777753 -117005800 - THE1B-int LTR MaLR 0 1580 1 2487 105 28 30 chr11 33777755 33778118 -117005435 - THE1B LTR MaLR -2 362 1 807 66 0 0 chr11 33778206 33778312 -117005241 + (GGAA)n Simple_repeat Simple_repeat 3 108 0 1769 153 7 10 chr11 33778406 33778707 -117004846 - AluJo SINE Alu -12 300 1 3044 203 26 49 chr11 33778939 33779701 -117003852 - L1ME2 LINE L1 0 6164 5420 1961 155 45 17 chr11 33779704 33780059 -117003494 + MLT1A1 LTR MaLR 1 365 0 263 113 97 16 chr11 33780251 33780313 -117003240 + L1M4 LINE L1 5816 5882 -296 425 194 22 7 chr11 33780313 33780421 -117003132 + MER31B LTR ERV1 1 112 -373 384 40 0 0 chr11 33780423 33780473 -117003080 + (TG)n Simple_repeat Simple_repeat 2 51 0 692 174 0 0 chr11 33780475 33780584 -117002969 - FLAM_A SINE Alu -21 121 13 2014 113 0 7 chr11 33780618 33780909 -117002644 - AluSx SINE Alu -23 289 1 265 302 75 19 chr11 33781159 33781265 -117002288 + MIR SINE MIR 20 131 -77 527 173 182 0 chr11 33781367 33781477 -117002076 - MLT1C LTR MaLR -334 133 4 365 284 138 0 chr11 33781584 33781700 -117001853 + MIR3 SINE MIR 46 177 -31 327 49 0 0 chr11 33781741 33781782 -117001771 + (T)n Simple_repeat Simple_repeat 1 41 0 339 214 83 12 chr11 33782128 33782212 -117001341 - MIR SINE MIR -12 250 161 734 222 50 15 chr11 33782214 33782412 -117001141 + LTR41 LTR ERVL 1 205 -568 485 192 0 48 chr11 33782921 33783046 -117000507 + LTR41 LTR ERVL 654 772 -1 421 307 47 13 chr11 33783047 33783197 -117000356 - MIR SINE MIR -98 164 10 2167 109 6 3 chr11 33783331 33783642 -116999911 + AluSx SINE Alu 1 312 0 298 206 0 68 chr11 33784241 33784314 -116999239 + MIR3 SINE MIR 12 79 -129 524 233 13 88 chr11 33784427 33784544 -116999009 - MIR SINE MIR 0 262 159 2180 91 7 0 chr11 33784544 33784840 -116998713 - AluSc SINE Alu -11 298 1 524 233 13 88 chr11 33784840 33784881 -116998672 - MIR SINE MIR -103 159 116 505 263 58 45 chr11 33785106 33785262 -116998291 - MIR SINE MIR -48 214 57 389 188 104 73 chr11 33785885 33785981 -116997572 + MER63 DNA MER1_type 27 751 -311 422 70 18 0 chr11 33786075 33786132 -116997421 + Alu SINE Alu 2 59 -259 324 343 188 39 chr11 33786275 33786522 -116997031 + L2 LINE L2 2886 3197 -75 1907 156 82 30 chr11 33786522 33786927 -116996626 + MSTA LTR MaLR 3 428 0 324 343 188 39 chr11 33786927 33787014 -116996539 + L2 LINE L2 3197 3270 -2 308 344 133 6 chr11 33788323 33788503 -116995050 - MIR SINE MIR 0 262 60 396 301 90 15 chr11 33790747 33790880 -116992673 + MIR SINE MIR 4 146 -116 1026 160 5 56 chr11 33792204 33792417 -116991136 - MER20 DNA MER1_type 0 219 18 285 290 0 11 chr11 33793074 33793167 -116990386 + MER5A DNA MER1_type 11 102 -87 2216 74 0 3 chr11 33793327 33793610 -116989943 + AluSg SINE Alu 10 291 -19 886 131 0 0 chr11 33793627 33793757 -116989796 + AluSg/x SINE Alu 125 254 -56 407 192 136 33 chr11 33793819 33793970 -116989583 + MIR SINE MIR 25 188 -63 321 258 101 14 chr11 33794541 33794724 -116988829 - MIR SINE MIR -10 252 3 316 0 45 0 chr11 33795925 33795969 -116987584 + (CA)n Simple_repeat Simple_repeat 2 47 0 412 252 205 62 chr11 33797832 33798042 -116985511 - MIR SINE MIR -3 259 20 477 238 47 2 chr11 33798773 33798895 -116984658 + MIR SINE MIR 30 166 -63 1644 155 11 21 chr11 33798895 33799213 -116984340 - AluJb SINE Alu 0 315 1 23 33 0 0 chr11 33799728 33799758 -116983795 + AT_rich Low_complexity Low_complexity 1 30 0 237 298 158 0 chr11 33800936 33801050 -116982503 + MIR SINE MIR 123 254 -8 1694 161 16 16 chr11 33801820 33802124 -116981429 - AluJo SINE Alu -8 304 1 186 211 228 0 chr11 33802537 33802594 -116980959 + MIR SINE MIR 177 246 -16 2077 109 42 0 chr11 33803409 33803693 -116979860 - AluSx SINE Alu -16 296 1 215 252 81 45 chr11 33805123 33805234 -116978319 - MIR3 SINE MIR -3 205 91 1770 187 3 13 chr11 33805246 33805551 -116978002 - AluJb SINE Alu -10 302 1 666 300 16 16 chr11 33806493 33806683 -116976870 + MIR SINE MIR 2 191 -71 2009 160 55 3 chr11 33806691 33806806 -116976747 + L1MC2 LINE L1 5832 5940 -404 2618 61 0 3 chr11 33806806 33807118 -116976435 + AluY SINE Alu 1 311 0 2009 160 55 3 chr11 33807118 33807384 -116976169 + L1MC2 LINE L1 5940 6233 -111 194 289 0 0 chr11 33807402 33807447 -116976106 + MIR SINE MIR 199 243 -19 2905 145 84 19 chr11 33808840 33809432 -116974121 + L1MB8 LINE L1 5548 6178 0 2185 125 3 0 chr11 33809474 33809771 -116973782 - AluSx SINE Alu -14 298 1 200 203 31 62 chr11 33809771 33809835 -116973718 - MER5B DNA MER1_type -115 63 2 1668 182 23 17 chr11 33810480 33810782 -116972771 - AluJo SINE Alu -8 304 1 376 279 274 6 chr11 33811286 33811465 -116972088 - L3 LINE CR1 -4 1573 1347 2166 89 10 20 chr11 33811504 33811808 -116971745 - AluY SINE Alu -10 301 1 2371 81 10 0 chr11 33811923 33812221 -116971332 + AluSg SINE Alu 1 301 -9 658 335 133 24 chr11 33812484 33812935 -116970618 - L3 LINE CR1 -955 622 123 455 295 47 21 chr11 33813131 33813324 -116970229 - Charlie8 DNA MER1_type -2184 233 36 333 190 0 0 chr11 33813330 33813388 -116970165 + AluSp/q SINE Alu 233 290 -13 263 161 59 0 chr11 33813388 33813506 -116970047 + (TA)n Simple_repeat Simple_repeat 2 126 0 277 266 221 26 chr11 33813530 33813684 -116969869 + MIR SINE MIR 69 252 -10 441 243 36 27 chr11 33813699 33813810 -116969743 - MIR SINE MIR -108 154 43 1977 121 0 134 chr11 33814089 33814478 -116969075 - MER1B DNA MER1_type 0 337 1 25 0 0 0 chr11 33814553 33814578 -116968975 + AT_rich Low_complexity Low_complexity 1 25 0 2446 93 0 0 chr11 33814748 33815058 -116968495 + AluSx SINE Alu 1 310 -2 225 178 0 0 chr11 33815791 33815836 -116967717 + A-rich Low_complexity Low_complexity 1 45 0 2084 117 38 0 chr11 33815872 33816162 -116967391 + AluSx SINE Alu 1 301 -11 2319 106 0 6 chr11 33816163 33816561 -116966992 + AluSx SINE Alu 2 397 0 283 295 17 35 chr11 33816563 33816736 -116966817 + L1MC5 LINE L1 7354 7523 -438 21 0 0 0 chr11 33817095 33817116 -116966437 + AT_rich Low_complexity Low_complexity 1 21 0 403 261 97 70 chr11 33817155 33817387 -116966166 + L1M4 LINE L1 5030 5271 -875 1595 156 87 28 chr11 33817387 33817676 -116965877 - AluJo SINE Alu -5 307 2 403 261 97 70 chr11 33817676 33817700 -116965853 + L1M4 LINE L1 5271 5293 -853 707 230 53 129 chr11 33817701 33817849 -116965704 + L2 LINE L2 1502 1660 -1654 2230 115 3 16 chr11 33817849 33818162 -116965391 - AluSx SINE Alu -3 309 1 707 230 53 129 chr11 33818162 33818408 -116965145 + L2 LINE L2 1660 1866 -1448 322 196 54 108 chr11 33818480 33818628 -116964925 + L1ME4a LINE L1 5982 6121 0 234 0 0 0 chr11 33819000 33819026 -116964527 + (CA)n Simple_repeat Simple_repeat 2 27 0 320 331 99 6 chr11 33819392 33819564 -116963989 + L1ME4a LINE L1 5930 6117 -4 720 208 48 39 chr11 33821516 33821747 -116961806 - MER112 DNA MER1_type -16 244 12 458 299 80 49 chr11 33821772 33821996 -116961557 + MIR SINE MIR 21 251 -11 180 0 0 0 chr11 33822204 33822224 -116961329 + (TTTTG)n Simple_repeat Simple_repeat 5 24 0 1878 154 0 7 chr11 33822227 33822506 -116961047 - AluJb SINE Alu -35 277 1 2200 127 0 0 chr11 33822526 33822825 -116960728 + AluSx SINE Alu 5 303 -9 200 323 0 0 chr11 33823205 33823270 -116960283 + GA-rich Low_complexity Low_complexity 4 68 0 2364 78 7 0 chr11 33823298 33823594 -116959959 + AluSp SINE Alu 1 298 -15 585 264 135 14 chr11 33824662 33824870 -116958683 + MIR SINE MIR 20 252 -10 2149 130 0 0 chr11 33827632 33827925 -116955628 - AluSx SINE Alu -19 293 1 228 200 0 0 chr11 33828018 33828058 -116955495 + Charlie5 DNA MER1_type 1 40 -2572 560 193 47 7 chr11 33828064 33828214 -116955339 + Charlie5 DNA MER1_type 2430 2585 -27 382 259 15 61 chr11 33828217 33828348 -116955205 + MIR SINE MIR 75 199 -63 312 237 93 10 chr11 33828426 33828523 -116955030 - MIR SINE MIR -51 211 107 195 42 0 0 chr11 33828612 33828636 -116954917 + (TAA)n Simple_repeat Simple_repeat 3 26 0 766 298 40 16 chr11 33831539 33831787 -116951766 + MIR SINE MIR 8 261 -1 2342 97 0 3 chr11 33831812 33832112 -116951441 + AluSc SINE Alu 1 299 -10 595 284 85 34 chr11 33832176 33832412 -116951141 + MIR SINE MIR 13 260 -2 2253 118 10 0 chr11 33832827 33833131 -116950422 + AluSx SINE Alu 1 307 -5 237 65 0 0 chr11 33837910 33837941 -116945612 + (A)n Simple_repeat Simple_repeat 1 31 0 621 69 0 0 chr11 33838336 33838423 -116945130 + (GA)n Simple_repeat Simple_repeat 2 88 0 1984 81 0 23 chr11 33839366 33839627 -116943926 - AluSx SINE Alu -10 302 48 193 161 0 0 chr11 33839845 33839876 -116943677 + MIR SINE MIR 46 76 -186 219 125 0 0 chr11 33842870 33842910 -116940643 + (CGG)n Simple_repeat Simple_repeat 2 41 0 225 159 0 0 chr11 33843345 33843389 -116940164 + (TGGG)n Simple_repeat Simple_repeat 1 44 0 268 188 0 0 chr11 33846399 33846447 -116937106 - MIR SINE MIR -57 151 104 630 226 54 59 chr11 33846463 33846649 -116936904 + MIR SINE MIR 8 192 -70 255 330 43 21 chr11 33846702 33846796 -116936757 - MIR3 SINE MIR -110 98 3 297 0 0 0 chr11 33848004 33848037 -116935516 + (A)n Simple_repeat Simple_repeat 1 33 0 180 77 0 0 chr11 33849397 33849423 -116934130 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 214 349 73 28 chr11 33849438 33849547 -116934006 - L2 LINE L2 -40 3232 3119 426 258 200 0 chr11 33849839 33849994 -116933559 + MIR SINE MIR 76 261 -1 351 303 62 0 chr11 33850388 33850509 -116933044 + MIR SINE MIR 34 162 -46 303 274 141 15 chr11 33850620 33850755 -116932798 + MIR SINE MIR 90 241 -21 720 332 45 0 chr11 33850866 33851110 -116932443 + MIR SINE MIR 6 260 -2 321 255 43 0 chr11 33851973 33852067 -116931486 - MER94 DNA DNA -21 113 16 26 0 0 0 chr11 33852082 33852108 -116931445 + AT_rich Low_complexity Low_complexity 1 26 0 2313 116 3 0 chr11 33852618 33852929 -116930624 - AluSx SINE Alu 0 312 1 1144 131 22 83 chr11 33853055 33853284 -116930269 + MER20 DNA MER1_type 1 215 -4 2333 85 3 3 chr11 33853319 33853624 -116929929 + AluY SINE Alu 1 305 -6 369 275 122 15 chr11 33855425 33855556 -116927997 - MIR3 SINE MIR 0 208 64 2327 85 10 0 chr11 33855755 33856048 -116927505 + AluSq SINE Alu 1 296 -17 194 152 0 43 chr11 33857114 33857160 -116926393 + CT-rich Low_complexity Low_complexity 4 47 0 416 284 56 27 chr11 33858762 33858949 -116924604 - MIR SINE MIR 0 262 66 2383 84 0 34 chr11 33858949 33859269 -116924284 + AluSc SINE Alu 1 309 0 416 284 56 27 chr11 33859269 33859290 -116924263 - MIR SINE MIR -196 66 47 238 257 129 0 chr11 33859375 33859445 -116924108 - LTR33 LTR ERVL -2 519 441 1229 144 86 0 chr11 33859470 33859657 -116923896 - AluSg/x SINE Alu -24 288 86 1296 256 42 21 chr11 33859657 33860082 -116923471 - LTR33 LTR ERVL -64 457 24 703 272 22 0 chr11 33860084 33860308 -116923245 - HAL1 LINE L1 -854 1653 1425 2006 94 56 10 chr11 33860367 33860655 -116922898 + AluY SINE Alu 1 301 -10 312 27 0 0 chr11 33862244 33862281 -116921272 + (TCCA)n Simple_repeat Simple_repeat 1 37 0 297 366 38 8 chr11 33862285 33862416 -116921137 - L2 LINE L2 -17 3255 3121 1666 92 0 14 chr11 33862417 33862635 -116920918 + AluSq SINE Alu 75 289 -24 528 324 48 0 chr11 33862707 33862914 -116920639 - MIR SINE MIR -40 222 6 311 306 73 54 chr11 33862940 33863262 -116920291 - L2 LINE L2 -190 3082 2741 2257 115 0 0 chr11 33863544 33863832 -116919721 + AluSx SINE Alu 1 288 -24 1394 232 53 65 chr11 33864155 33864664 -116918889 + MLT1D LTR MaLR 1 503 -2 414 187 47 28 chr11 33864690 33864797 -116918756 - MER117 DNA MER1_type -48 149 41 622 231 66 23 chr11 33864925 33865123 -116918430 + MIR SINE MIR 45 252 -10 2413 89 3 10 chr11 33865187 33865501 -116918052 - AluSx SINE Alu 0 312 1 213 398 0 9 chr11 33865584 33865692 -116917861 - L2 LINE L2 -727 2587 2481 2297 104 0 0 chr11 33866000 33866299 -116917254 + AluSg SINE Alu 1 299 -11 2394 82 0 23 chr11 33866378 33866683 -116916870 - AluY SINE Alu -13 298 1 411 303 77 13 chr11 33867559 33867714 -116915839 + MIR3 SINE MIR 37 201 -7 227 252 25 76 chr11 33867771 33867817 -116915736 + L1ME4a LINE L1 5548 5595 -526 1588 177 0 47 chr11 33867817 33867997 -116915556 - AluJo SINE Alu -5 307 147 2216 86 45 0 chr11 33867997 33868287 -116915266 - AluY SINE Alu -8 303 1 1588 177 0 47 chr11 33868287 33868428 -116915125 - AluJo SINE Alu -165 147 1 227 252 25 76 chr11 33868428 33868500 -116915053 + L1ME4a LINE L1 5595 5660 -461 237 233 81 47 chr11 33868504 33868590 -116914963 + L1ME4a LINE L1 5685 5773 -2035 587 135 18 27 chr11 33868843 33868945 -116914608 + Charlie5 DNA MER1_type 12 114 -2510 2221 98 0 33 chr11 33868945 33869251 -116914302 - AluSg SINE Alu -14 296 1 1864 154 33 0 chr11 33869263 33869562 -116913991 - AluJb SINE Alu -3 309 1 1251 144 0 5 chr11 33869640 33870013 -116913540 + AluSg/x SINE Alu 112 312 0 209 180 20 0 chr11 33870522 33870572 -116912981 + GA-rich Low_complexity Low_complexity 3 53 0 208 219 0 0 chr11 33870940 33870981 -116912572 + L2 LINE L2 3205 3245 -27 2095 129 10 0 chr11 33870992 33871301 -116912252 - AluSx SINE Alu 0 312 1 2451 53 0 0 chr11 33871476 33871790 -116911763 - AluY SINE Alu 0 314 1 277 332 101 34 chr11 33871790 33872088 -116911465 - L2 LINE L2 -10 3303 2986 1717 182 3 3 chr11 33872572 33872868 -116910685 + AluJb SINE Alu 11 306 -6 904 238 32 11 chr11 33872942 33873224 -116910329 - L1MA4 LINE L1 -2 6298 6011 254 203 0 17 chr11 33873467 33873526 -116910027 - L1MC/D LINE L1 -2016 5792 5735 2289 89 0 7 chr11 33873564 33873845 -116909708 - AluSc SINE Alu -29 280 2 324 93 0 0 chr11 33874838 33874881 -116908672 - MADE1 DNA Mariner -37 43 1 324 219 52 0 chr11 33874932 33875028 -116908525 + L1ME4a LINE L1 6008 6108 -13 296 256 50 41 chr11 33875078 33875188 -116908365 + L1MD2 LINE L1 5051 5164 -982 2059 97 0 4 chr11 33875188 33875455 -116908098 + AluSx SINE Alu 1 266 -46 580 198 160 44 chr11 33875508 33875835 -116907718 + L1MD2 LINE L1 5149 5486 -744 613 173 0 0 chr11 33875840 33875944 -116907609 + FLAM_C SINE Alu 38 141 -2 2937 199 81 85 chr11 33875954 33876071 -116907482 + L1MD2 LINE L1 5495 5611 -748 1719 184 0 14 chr11 33876071 33876364 -116907189 - AluJb SINE Alu -23 289 1 2937 199 81 85 chr11 33876364 33876807 -116906746 + L1MD2 LINE L1 5611 6052 -307 2108 97 29 0 chr11 33876807 33877086 -116906467 - AluSq SINE Alu -26 287 1 2937 199 81 85 chr11 33877086 33877391 -116906162 + L1MD2 LINE L1 6052 6357 -2 1574 182 62 56 chr11 33877525 33877565 -116905988 - L1MB5 LINE L1 -10 6164 6126 1530 170 24 27 chr11 33877565 33877859 -116905694 - AluJo SINE Alu -19 293 1 1574 182 62 56 chr11 33877859 33878208 -116905345 - L1MB5 LINE L1 -48 6126 5773 418 194 0 0 chr11 33878235 33878302 -116905251 - AluJ/FLAM SINE Alu -244 68 2 183 156 0 0 chr11 33878339 33878371 -116905182 + CT-rich Low_complexity Low_complexity 2 33 0 2116 127 10 0 chr11 33878379 33878686 -116904867 - AluSg SINE Alu 0 310 1 434 345 0 25 chr11 33879433 33879633 -116903920 - MIR SINE MIR -12 250 56 2253 110 0 0 chr11 33879693 33879985 -116903568 + AluSx SINE Alu 10 301 -11 551 267 148 14 chr11 33879985 33880195 -116903358 + MIR SINE MIR 22 259 -3 641 283 108 0 chr11 33880500 33880712 -116902841 - ERVL LTR ERVL -5504 260 26 2462 65 16 7 chr11 33880712 33881020 -116902533 + AluY SINE Alu 1 311 0 715 144 9 9 chr11 33881062 33881173 -116902380 + MER66B LTR ERV1 373 483 -3 633 170 22 67 chr11 33881318 33881534 -116902019 + MER66A LTR ERV1 97 245 -233 1214 162 10 0 chr11 33881535 33881733 -116901820 - AluJb SINE Alu -10 302 103 299 250 221 15 chr11 33882078 33882214 -116901339 - MIR3 SINE MIR -43 165 2 1744 188 3 3 chr11 33882542 33882830 -116900723 + AluJb SINE Alu 5 292 -20 1153 135 0 0 chr11 33882943 33883106 -116900447 + AluSg/x SINE Alu 132 294 -16 2353 155 6 77 chr11 33883116 33883544 -116900009 - MER66B LTR ERV1 0 486 29 2087 122 34 3 chr11 33883544 33883838 -116899715 + AluSx SINE Alu 1 303 -9 2124 105 44 10 chr11 33883839 33884133 -116899420 + AluSp SINE Alu 1 304 -9 2353 155 6 77 chr11 33884133 33884225 -116899328 - MER66B LTR ERV1 -456 30 1 2259 113 0 0 chr11 33885074 33885374 -116898179 + AluY SINE Alu 1 300 -11 567 291 51 8 chr11 33885648 33885885 -116897668 - MIR SINE MIR -1 261 15 671 259 128 4 chr11 33888018 33888261 -116895292 - L1ME3A LINE L1 -229 5941 5669 2266 94 0 57 chr11 33888318 33888649 -116894904 + AluSx SINE Alu 1 312 0 681 255 82 57 chr11 33888651 33888876 -116894677 - LTR16C LTR ERVL -21 470 235 2682 49 0 0 chr11 33888876 33889184 -116894369 + AluY SINE Alu 1 308 -3 681 255 82 57 chr11 33889184 33889240 -116894313 - LTR16C LTR ERVL -256 235 182 441 70 0 0 chr11 33889839 33889933 -116893620 + Alu SINE Alu 225 318 0 798 206 6 6 chr11 33890495 33890660 -116892893 + FRAM SINE Alu 1 165 -11 1554 141 20 184 chr11 33890756 33890803 -116892750 - MLT2D LTR ERVL 0 414 361 279 0 0 0 chr11 33890803 33890834 -116892719 + (TG)n Simple_repeat Simple_repeat 2 32 0 1554 141 20 184 chr11 33890834 33891167 -116892386 - MLT2D LTR ERVL -53 361 131 2473 93 0 0 chr11 33891167 33891477 -116892076 + AluY SINE Alu 1 310 -1 1554 141 20 184 chr11 33891477 33891590 -116891963 - MLT2D LTR ERVL -283 131 1 539 313 38 0 chr11 33891594 33891754 -116891799 + MER117 DNA MER1_type 32 197 0 2408 109 0 0 chr11 33891853 33892165 -116891388 - AluSx SINE Alu 0 312 1 656 250 162 80 chr11 33892222 33892686 -116890867 + L1ME3A LINE L1 5669 6170 0 1032 114 0 0 chr11 33892920 33893052 -116890501 - AluSq/x SINE Alu -181 132 1 186 297 176 22 chr11 33893133 33893224 -116890329 - L2 LINE L2 -41 3231 3127 1768 171 0 14 chr11 33894157 33894450 -116889103 - AluJo SINE Alu -23 289 1 2243 108 0 7 chr11 33894613 33894908 -116888645 + AluSg SINE Alu 1 293 -17 530 153 0 0 chr11 33894942 33895027 -116888526 - FRAM SINE Alu -18 158 74 288 310 30 10 chr11 33895196 33895296 -116888257 - L2 LINE L2 0 3313 3212 367 158 79 0 chr11 33895671 33895747 -116887806 - L1MB3 LINE L1 -2 6181 6100 2078 133 0 7 chr11 33895759 33896052 -116887501 - AluSg SINE Alu -19 291 1 839 152 0 0 chr11 33896084 33896216 -116887337 - FLAM_C SINE Alu -1 132 1 2572 66 0 0 chr11 33896348 33896652 -116886901 - AluY SINE Alu -7 304 1 1824 115 4 0 chr11 33897120 33897373 -116886180 - AluSx SINE Alu 0 312 59 226 233 0 0 chr11 33897474 33897517 -116886036 + GA-rich Low_complexity Low_complexity 2 44 0 379 293 77 17 chr11 33897818 33897999 -116885554 + MIR SINE MIR 65 256 -6 196 362 67 9 chr11 33898186 33898291 -116885262 - L2 LINE L2 -11 3261 3151 256 326 36 88 chr11 33898373 33898566 -116884987 - L3 LINE CR1 -17 1560 1378 324 0 0 0 chr11 33898875 33898911 -116884642 + (TTA)n Simple_repeat Simple_repeat 2 37 0 21 36 0 0 chr11 33898951 33898979 -116884574 + AT_rich Low_complexity Low_complexity 1 28 0 2294 110 0 0 chr11 33899008 33899300 -116884253 + AluSx SINE Alu 1 292 -20 269 163 0 0 chr11 33899302 33899351 -116884202 + MER116 DNA Mariner 15 63 -17 374 278 0 9 chr11 33900166 33900274 -116883279 - L1ME LINE L1 -298 5823 5717 1802 181 7 3 chr11 33900330 33900682 -116882871 - AluJb SINE Alu 0 353 1 1480 117 0 0 chr11 33901158 33901354 -116882199 + AluSx SINE Alu 33 228 -84 696 199 74 7 chr11 33901359 33901510 -116882043 - MLT1A2 LTR MaLR -229 161 1 1457 185 116 41 chr11 33901511 33901949 -116881604 - L1MC5 LINE L1 -435 7526 7056 * 16568 31 4 8 chr11 33901942 33904808 -116878745 + L1PA4 LINE L1 3326 6178 0 24 32 0 0 chr11 33906252 33906283 -116877270 + GC_rich Low_complexity Low_complexity 1 31 0 815 252 105 8 chr11 33956408 33956781 -116826772 - L1M4 LINE L1 -2878 3268 2860 * 1911 144 86 0 chr11 33956770 33957096 -116826457 - L1PA16 LINE L1 -7 6159 5806 1311 248 107 10 chr11 33957098 33957603 -116825950 - L1M4 LINE L1 -3276 2870 2317 238 104 21 21 chr11 33957603 33957651 -116825902 + (TCCC)n Simple_repeat Simple_repeat 3 50 0 766 158 0 24 chr11 33958673 33958800 -116824753 + FLAM_C SINE Alu 14 137 -6 341 26 0 0 chr11 33959037 33959075 -116824478 - L1P LINE L1 -3572 2574 2537 * 2468 150 54 14 chr11 33959069 33959510 -116824043 + L1MC3 LINE L1 7102 7560 -225 1966 123 0 3 chr11 33959518 33959871 -116823682 - AluSx SINE Alu 0 352 1 2002 223 38 7 chr11 33959873 33960420 -116823133 - L1M4 LINE L1 -782 5364 4801 1182 137 71 18 chr11 33960520 33960746 -116822807 - Tigger3(Golem) DNA MER2_type -288 2741 2504 1406 196 7 11 chr11 33960760 33961041 -116822512 - AluJo SINE Alu -30 282 3 1042 203 11 0 chr11 33961063 33961240 -116822313 - Tigger3(Golem) DNA MER2_type -2848 181 3 315 0 0 0 chr11 33961359 33961394 -116822159 + (TG)n Simple_repeat Simple_repeat 2 36 0 3247 178 16 5 chr11 33961442 33962008 -116821545 - LTR39 LTR ERV1 0 783 212 2274 84 13 52 chr11 33962014 33962395 -116821158 - MER41A LTR ERV1 0 554 189 575 162 29 44 chr11 33962745 33962881 -116820672 - LTR39 LTR ERV1 -649 134 1 1894 107 18 4 chr11 33963439 33963720 -116819833 - AluSx SINE Alu -27 285 1 387 266 48 16 chr11 33963793 33963917 -116819636 - MIR SINE MIR -44 218 91 2062 122 0 13 chr11 33964557 33964836 -116818717 + AluSc SINE Alu 1 277 -32 185 0 40 0 chr11 33964836 33964861 -116818692 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2062 122 0 13 chr11 33964861 33964893 -116818660 + AluSc SINE Alu 277 308 -1 276 329 0 0 chr11 33965050 33965123 -116818430 - L2 LINE L2 -21 3251 3179 2047 168 139 22 chr11 33965127 33965579 -116817974 - MLT1D LTR MaLR 0 505 1 1207 106 6 0 chr11 33965727 33965897 -116817656 + AluSg/x SINE Alu 135 305 -5 263 242 219 29 chr11 33966032 33966262 -116817291 - L2 LINE L2 -484 2830 2645 1939 123 0 28 chr11 33966262 33966579 -116816974 - AluSx SINE Alu -2 310 3 263 242 219 29 chr11 33966579 33966699 -116816854 - L2 LINE L2 -669 2645 2413 392 258 11 0 chr11 33966784 33966877 -116816676 + MIR SINE MIR 169 262 0 2901 169 15 78 chr11 33967189 33967745 -116815808 - LTR9 LTR ERV1 0 612 101 2077 61 79 0 chr11 33967745 33968025 -116815528 + AluSq SINE Alu 1 302 -11 2901 169 15 78 chr11 33968025 33968121 -116815432 - LTR9 LTR ERV1 -511 101 1 2227 90 0 6 chr11 33968174 33968486 -116815067 - AluY SINE Alu -1 310 1 2077 118 0 16 chr11 33969516 33969822 -116813731 + AluSc SINE Alu 1 301 -8 243 109 236 0 chr11 33969960 33970015 -116813538 - THE1B LTR MaLR 0 375 308 2000 128 53 35 chr11 33970080 33970399 -116813154 - THE1B LTR MaLR -39 325 1 11907 91 9 9 chr11 33970399 33971979 -116811574 - THE1B-int LTR MaLR 0 1580 1 2487 105 28 30 chr11 33971981 33972344 -116811209 - THE1B LTR MaLR -2 362 1 807 66 0 0 chr11 33972432 33972538 -116811015 + (GGAA)n Simple_repeat Simple_repeat 3 108 0 1769 153 7 10 chr11 33972632 33972933 -116810620 - AluJo SINE Alu -12 300 1 3044 203 26 49 chr11 33973165 33973927 -116809626 - L1ME2 LINE L1 0 6164 5420 1961 155 45 17 chr11 33973930 33974285 -116809268 + MLT1A1 LTR MaLR 1 365 0 263 113 97 16 chr11 33974477 33974539 -116809014 + L1M4 LINE L1 5816 5882 -296 425 194 22 7 chr11 33974539 33974647 -116808906 + MER31B LTR ERV1 1 112 -373 384 40 0 0 chr11 33974649 33974699 -116808854 + (TG)n Simple_repeat Simple_repeat 2 51 0 692 174 0 0 chr11 33974701 33974810 -116808743 - FLAM_A SINE Alu -21 121 13 2014 113 0 7 chr11 33974844 33975135 -116808418 - AluSx SINE Alu -23 289 1 265 302 75 19 chr11 33975385 33975491 -116808062 + MIR SINE MIR 20 131 -77 527 173 182 0 chr11 33975593 33975703 -116807850 - MLT1C LTR MaLR -334 133 4 365 284 138 0 chr11 33975810 33975926 -116807627 + MIR3 SINE MIR 46 177 -31 327 49 0 0 chr11 33975967 33976008 -116807545 + (T)n Simple_repeat Simple_repeat 1 41 0 339 214 83 12 chr11 33976354 33976438 -116807115 - MIR SINE MIR -12 250 161 734 222 50 15 chr11 33976440 33976638 -116806915 + LTR41 LTR ERVL 1 205 -568 485 192 0 48 chr11 33977147 33977272 -116806281 + LTR41 LTR ERVL 654 772 -1 421 307 47 13 chr11 33977273 33977423 -116806130 - MIR SINE MIR -98 164 10 2167 109 6 3 chr11 33977557 33977868 -116805685 + AluSx SINE Alu 1 312 0 298 206 0 68 chr11 33978467 33978540 -116805013 + MIR3 SINE MIR 12 79 -129 524 233 13 88 chr11 33978653 33978770 -116804783 - MIR SINE MIR 0 262 159 2180 91 7 0 chr11 33978770 33979066 -116804487 - AluSc SINE Alu -11 298 1 524 233 13 88 chr11 33979066 33979107 -116804446 - MIR SINE MIR -103 159 116 505 263 58 45 chr11 33979332 33979488 -116804065 - MIR SINE MIR -48 214 57 389 188 104 73 chr11 33980111 33980207 -116803346 + MER63 DNA MER1_type 27 751 -311 422 70 18 0 chr11 33980301 33980358 -116803195 + Alu SINE Alu 2 59 -259 324 343 188 39 chr11 33980501 33980748 -116802805 + L2 LINE L2 2886 3197 -75 1907 156 82 30 chr11 33980748 33981153 -116802400 + MSTA LTR MaLR 3 428 0 324 343 188 39 chr11 33981153 33981240 -116802313 + L2 LINE L2 3197 3270 -2 308 344 133 6 chr11 33982549 33982729 -116800824 - MIR SINE MIR 0 262 60 396 301 90 15 chr11 33984973 33985106 -116798447 + MIR SINE MIR 4 146 -116 1026 160 5 56 chr11 33986430 33986643 -116796910 - MER20 DNA MER1_type 0 219 18 285 290 0 11 chr11 33987300 33987393 -116796160 + MER5A DNA MER1_type 11 102 -87 2216 74 0 3 chr11 33987553 33987836 -116795717 + AluSg SINE Alu 10 291 -19 886 131 0 0 chr11 33987853 33987983 -116795570 + AluSg/x SINE Alu 127 256 -56 407 192 136 33 chr11 33988045 33988196 -116795357 + MIR SINE MIR 25 188 -63 321 258 101 14 chr11 33988767 33988950 -116794603 - MIR SINE MIR -10 252 3 316 0 45 0 chr11 33990151 33990195 -116793358 + (CA)n Simple_repeat Simple_repeat 2 47 0 412 252 205 62 chr11 33992058 33992268 -116791285 - MIR SINE MIR -3 259 20 477 238 47 2 chr11 33992999 33993121 -116790432 + MIR SINE MIR 30 166 -63 1644 155 11 21 chr11 33993121 33993439 -116790114 - AluJb SINE Alu 0 315 1 23 33 0 0 chr11 33993954 33993984 -116789569 + AT_rich Low_complexity Low_complexity 1 30 0 237 298 158 0 chr11 33995162 33995276 -116788277 + MIR SINE MIR 123 254 -8 1694 161 16 16 chr11 33996046 33996350 -116787203 - AluJo SINE Alu -8 304 1 186 211 228 0 chr11 33996763 33996820 -116786733 + MIR SINE MIR 177 246 -16 1939 109 42 0 chr11 33997635 33997919 -116785634 - AluSx SINE Alu -16 296 1 213 252 81 45 chr11 33999349 33999460 -116784093 - MIR3 SINE MIR -3 205 91 1620 187 3 13 chr11 33999472 33999777 -116783776 - AluJb SINE Alu -10 302 1 665 300 16 16 chr11 34000719 34000909 -116782644 + MIR SINE MIR 2 191 -71 2120 152 58 5 chr11 34000917 34001032 -116782521 + L1MC2 LINE L1 5832 5940 -404 2469 61 0 3 chr11 34001032 34001344 -116782209 + AluY SINE Alu 1 311 0 2120 152 58 5 chr11 34001344 34001610 -116781943 + L1MC2 LINE L1 5940 6233 -111 196 289 0 0 chr11 34001628 34001673 -116781880 + MIR SINE MIR 199 243 -19 3028 140 86 20 chr11 34003066 34003658 -116779895 + L1MB8 LINE L1 5548 6178 0 2036 125 3 0 chr11 34003700 34003997 -116779556 - AluSx SINE Alu -14 298 1 199 203 31 62 chr11 34003997 34004061 -116779492 - MER5B DNA MER1_type -115 63 2 1520 182 23 17 chr11 34004706 34005008 -116778545 - AluJo SINE Alu -8 304 1 373 279 274 6 chr11 34005512 34005691 -116777862 - L3 LINE CR1 -4 1573 1347 2024 89 10 20 chr11 34005730 34006034 -116777519 - AluY SINE Alu -10 301 1 2224 81 10 0 chr11 34006149 34006447 -116777106 + AluSg SINE Alu 1 301 -9 660 335 133 24 chr11 34006710 34007161 -116776392 - L3 LINE CR1 -955 622 123 490 269 45 97 chr11 34007242 34007550 -116776003 - Charlie8 DNA MER1_type -1003 1414 36 353 190 0 0 chr11 34007556 34007614 -116775939 + AluSp/q SINE Alu 233 290 -13 263 161 59 0 chr11 34007614 34007732 -116775821 + (TA)n Simple_repeat Simple_repeat 2 126 0 280 266 221 26 chr11 34007756 34007910 -116775643 + MIR SINE MIR 69 252 -10 441 243 36 27 chr11 34007925 34008036 -116775517 - MIR SINE MIR -108 154 43 1977 121 0 134 chr11 34008315 34008704 -116774849 - MER1B DNA MER1_type 0 337 1 25 0 0 0 chr11 34008779 34008804 -116774749 + AT_rich Low_complexity Low_complexity 1 25 0 2446 93 0 0 chr11 34008974 34009284 -116774269 + AluSx SINE Alu 1 310 -2 225 178 0 0 chr11 34010017 34010062 -116773491 + A-rich Low_complexity Low_complexity 1 45 0 2084 117 38 0 chr11 34010098 34010388 -116773165 + AluSx SINE Alu 1 301 -11 2319 106 0 6 chr11 34010389 34010787 -116772766 + AluSx SINE Alu 2 397 0 283 295 17 35 chr11 34010789 34010962 -116772591 + L1MC5 LINE L1 7354 7523 -438 21 0 0 0 chr11 34011321 34011342 -116772211 + AT_rich Low_complexity Low_complexity 1 21 0 403 261 97 70 chr11 34011381 34011613 -116771940 + L1M4 LINE L1 5030 5271 -875 1595 156 87 28 chr11 34011613 34011902 -116771651 - AluJo SINE Alu -5 307 2 403 261 97 70 chr11 34011902 34011926 -116771627 + L1M4 LINE L1 5271 5293 -853 707 230 53 129 chr11 34011927 34012075 -116771478 + L2 LINE L2 1502 1660 -1654 2230 115 3 16 chr11 34012075 34012388 -116771165 - AluSx SINE Alu -3 309 1 707 230 53 129 chr11 34012388 34012634 -116770919 + L2 LINE L2 1660 1866 -1448 322 196 54 108 chr11 34012706 34012854 -116770699 + L1ME4a LINE L1 5982 6121 0 234 0 0 0 chr11 34013226 34013252 -116770301 + (CA)n Simple_repeat Simple_repeat 2 27 0 320 331 99 6 chr11 34013618 34013790 -116769763 + L1ME4a LINE L1 5930 6117 -4 720 208 48 39 chr11 34015742 34015973 -116767580 - MER112 DNA MER1_type -16 244 12 458 299 80 49 chr11 34015998 34016222 -116767331 + MIR SINE MIR 21 251 -11 180 0 0 0 chr11 34016430 34016450 -116767103 + (TTTTG)n Simple_repeat Simple_repeat 5 24 0 1878 154 0 7 chr11 34016453 34016732 -116766821 - AluJb SINE Alu -35 277 1 2200 127 0 0 chr11 34016752 34017051 -116766502 + AluSx SINE Alu 5 303 -9 200 323 0 0 chr11 34017431 34017496 -116766057 + GA-rich Low_complexity Low_complexity 4 68 0 2364 78 7 0 chr11 34017524 34017820 -116765733 + AluSp SINE Alu 1 298 -15 585 264 135 14 chr11 34018888 34019096 -116764457 + MIR SINE MIR 20 252 -10 2149 130 0 0 chr11 34021858 34022151 -116761402 - AluSx SINE Alu -19 293 1 228 200 0 0 chr11 34022244 34022284 -116761269 + Charlie5 DNA MER1_type 1 40 -2572 560 193 47 7 chr11 34022290 34022440 -116761113 + Charlie5 DNA MER1_type 2430 2585 -27 382 259 15 61 chr11 34022443 34022574 -116760979 + MIR SINE MIR 75 199 -63 312 237 93 10 chr11 34022652 34022749 -116760804 - MIR SINE MIR -51 211 107 195 42 0 0 chr11 34022838 34022862 -116760691 + (TAA)n Simple_repeat Simple_repeat 3 26 0 766 298 40 16 chr11 34025765 34026013 -116757540 + MIR SINE MIR 8 261 -1 2342 97 0 3 chr11 34026038 34026338 -116757215 + AluSc SINE Alu 1 299 -10 595 284 85 34 chr11 34026402 34026638 -116756915 + MIR SINE MIR 13 260 -2 2253 118 10 0 chr11 34027053 34027357 -116756196 + AluSx SINE Alu 1 307 -5 237 65 0 0 chr11 34032136 34032167 -116751386 + (A)n Simple_repeat Simple_repeat 1 31 0 621 69 0 0 chr11 34032562 34032649 -116750904 + (GA)n Simple_repeat Simple_repeat 2 88 0 1984 81 0 23 chr11 34033592 34033853 -116749700 - AluSx SINE Alu -10 302 48 193 161 0 0 chr11 34034071 34034102 -116749451 + MIR SINE MIR 46 76 -186 219 125 0 0 chr11 34037096 34037136 -116746417 + (CGG)n Simple_repeat Simple_repeat 2 41 0 225 159 0 0 chr11 34037571 34037615 -116745938 + (TGGG)n Simple_repeat Simple_repeat 1 44 0 268 188 0 0 chr11 34040625 34040673 -116742880 - MIR SINE MIR -57 151 104 630 226 54 59 chr11 34040689 34040875 -116742678 + MIR SINE MIR 8 192 -70 255 330 43 21 chr11 34040928 34041022 -116742531 - MIR3 SINE MIR -110 98 3 297 0 0 0 chr11 34042230 34042263 -116741290 + (A)n Simple_repeat Simple_repeat 1 33 0 180 77 0 0 chr11 34043623 34043649 -116739904 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 214 349 73 28 chr11 34043664 34043773 -116739780 - L2 LINE L2 -40 3232 3119 426 258 200 0 chr11 34044065 34044220 -116739333 + MIR SINE MIR 76 261 -1 351 303 62 0 chr11 34044614 34044735 -116738818 + MIR SINE MIR 34 162 -46 303 274 141 15 chr11 34044846 34044981 -116738572 + MIR SINE MIR 90 241 -21 720 332 45 0 chr11 34045092 34045336 -116738217 + MIR SINE MIR 6 260 -2 321 255 43 0 chr11 34046199 34046293 -116737260 - MER94 DNA DNA -21 113 16 26 0 0 0 chr11 34046308 34046334 -116737219 + AT_rich Low_complexity Low_complexity 1 26 0 2313 116 3 0 chr11 34046844 34047155 -116736398 - AluSx SINE Alu 0 312 1 1144 131 22 83 chr11 34047281 34047510 -116736043 + MER20 DNA MER1_type 1 215 -4 2333 85 3 3 chr11 34047545 34047850 -116735703 + AluY SINE Alu 1 305 -6 430 290 107 0 chr11 34049651 34049782 -116733771 - MIR3 SINE MIR 0 208 64 2339 85 10 0 chr11 34049981 34050274 -116733279 + AluSq SINE Alu 1 296 -17 194 152 0 43 chr11 34051340 34051386 -116732167 + CT-rich Low_complexity Low_complexity 4 47 0 231 315 105 7 chr11 34051428 34051571 -116731982 - MIR SINE MIR -48 214 58 503 300 66 37 chr11 34052988 34053175 -116730378 - MIR SINE MIR 0 262 65 2409 84 0 34 chr11 34053175 34053495 -116730058 + AluSc SINE Alu 1 309 0 503 300 66 37 chr11 34053495 34053550 -116730003 - MIR SINE MIR -197 65 13 1246 149 74 19 chr11 34053668 34053883 -116729670 - AluSg/x SINE Alu 0 312 86 1197 259 42 21 chr11 34053883 34054308 -116729245 - LTR33 LTR ERVL -64 457 24 636 272 22 0 chr11 34054310 34054534 -116729019 - HAL1 LINE L1 -854 1653 1425 2022 94 56 10 chr11 34054593 34054881 -116728672 + AluY SINE Alu 1 301 -10 312 27 0 0 chr11 34056470 34056507 -116727046 + (TCCA)n Simple_repeat Simple_repeat 1 37 0 338 366 38 8 chr11 34056511 34056642 -116726911 - L2 LINE L2 -17 3255 3121 1682 95 0 14 chr11 34056643 34056864 -116726689 + AluSq SINE Alu 75 292 -21 617 324 48 0 chr11 34056933 34057140 -116726413 - MIR SINE MIR -40 222 6 396 306 73 54 chr11 34057166 34057488 -116726065 - L2 LINE L2 -190 3082 2741 2277 117 0 0 chr11 34057770 34058061 -116725492 + AluSx SINE Alu 1 291 -21 184 282 171 51 chr11 34058235 34058352 -116725201 - L2 LINE L2 0 3272 3142 1394 232 53 65 chr11 34058381 34058554 -116724999 + MLT1D LTR MaLR 1 175 -330 998 140 6 13 chr11 34058554 34058711 -116724842 - AluJb SINE Alu -5 307 152 1394 232 53 65 chr11 34058711 34058890 -116724663 + MLT1D LTR MaLR 175 503 -2 414 187 47 28 chr11 34058916 34059023 -116724530 - MER117 DNA MER1_type -48 149 41 622 231 66 23 chr11 34059151 34059349 -116724204 + MIR SINE MIR 45 252 -10 2413 89 3 10 chr11 34059413 34059727 -116723826 - AluSx SINE Alu 0 312 1 213 398 0 9 chr11 34059810 34059918 -116723635 - L2 LINE L2 -727 2587 2481 2297 104 0 0 chr11 34060226 34060525 -116723028 + AluSg SINE Alu 1 299 -11 2394 82 0 23 chr11 34060604 34060909 -116722644 - AluY SINE Alu -13 298 1 411 303 77 13 chr11 34061785 34061940 -116721613 + MIR3 SINE MIR 37 201 -7 227 252 25 76 chr11 34061997 34062043 -116721510 + L1ME4a LINE L1 5548 5595 -526 1588 177 0 47 chr11 34062043 34062223 -116721330 - AluJo SINE Alu -5 307 147 2216 86 45 0 chr11 34062223 34062513 -116721040 - AluY SINE Alu -8 303 1 1588 177 0 47 chr11 34062513 34062654 -116720899 - AluJo SINE Alu -165 147 1 227 252 25 76 chr11 34062654 34062726 -116720827 + L1ME4a LINE L1 5595 5660 -461 237 233 81 47 chr11 34062730 34062816 -116720737 + L1ME4a LINE L1 5685 5773 -2035 587 135 18 27 chr11 34063069 34063171 -116720382 + Charlie5 DNA MER1_type 12 114 -2510 2221 98 0 33 chr11 34063171 34063477 -116720076 - AluSg SINE Alu -14 296 1 1864 154 33 0 chr11 34063489 34063788 -116719765 - AluJb SINE Alu -3 309 1 1251 144 0 5 chr11 34063866 34064239 -116719314 + AluSg/x SINE Alu 112 312 0 209 180 20 0 chr11 34064748 34064798 -116718755 + GA-rich Low_complexity Low_complexity 3 53 0 208 219 0 0 chr11 34065166 34065207 -116718346 + L2 LINE L2 3246 3286 -27 2095 129 10 0 chr11 34065218 34065527 -116718026 - AluSx SINE Alu 0 312 1 2451 53 0 0 chr11 34065702 34066016 -116717537 - AluY SINE Alu 0 314 1 277 332 101 34 chr11 34066016 34066314 -116717239 - L2 LINE L2 -10 3303 2986 1717 182 3 3 chr11 34066798 34067094 -116716459 + AluJb SINE Alu 11 306 -6 904 238 32 11 chr11 34067168 34067450 -116716103 - L1MA4 LINE L1 -2 6298 6011 254 203 0 17 chr11 34067693 34067752 -116715801 - L1MC/D LINE L1 -2016 5792 5735 2289 89 0 7 chr11 34067790 34068071 -116715482 - AluSc SINE Alu -29 280 2 324 93 0 0 chr11 34069064 34069107 -116714446 - MADE1 DNA Mariner -37 43 1 324 219 52 0 chr11 34069158 34069254 -116714299 + L1ME4a LINE L1 6008 6108 -13 296 256 50 41 chr11 34069304 34069414 -116714139 + L1MD2 LINE L1 5051 5164 -982 2059 97 0 4 chr11 34069414 34069681 -116713872 + AluSx SINE Alu 1 266 -46 580 198 160 44 chr11 34069734 34070061 -116713492 + L1MD2 LINE L1 5149 5486 -744 613 173 0 0 chr11 34070066 34070170 -116713383 + FLAM_C SINE Alu 38 141 -2 2937 199 81 85 chr11 34070180 34070297 -116713256 + L1MD2 LINE L1 5495 5611 -748 1719 184 0 14 chr11 34070297 34070590 -116712963 - AluJb SINE Alu -23 289 1 2937 199 81 85 chr11 34070590 34071033 -116712520 + L1MD2 LINE L1 5611 6052 -307 2108 97 29 0 chr11 34071033 34071312 -116712241 - AluSq SINE Alu -26 287 1 2937 199 81 85 chr11 34071312 34071617 -116711936 + L1MD2 LINE L1 6052 6357 -2 1574 182 62 56 chr11 34071751 34071791 -116711762 - L1MB5 LINE L1 -10 6164 6126 1530 170 24 27 chr11 34071791 34072085 -116711468 - AluJo SINE Alu -19 293 1 1574 182 62 56 chr11 34072085 34072434 -116711119 - L1MB5 LINE L1 -48 6126 5773 418 194 0 0 chr11 34072461 34072528 -116711025 - AluJ/FLAM SINE Alu -244 68 2 183 156 0 0 chr11 34072565 34072597 -116710956 + CT-rich Low_complexity Low_complexity 2 33 0 2116 127 10 0 chr11 34072605 34072912 -116710641 - AluSg SINE Alu 0 310 1 434 345 0 25 chr11 34073659 34073859 -116709694 - MIR SINE MIR -12 250 56 2253 110 0 0 chr11 34073919 34074211 -116709342 + AluSx SINE Alu 10 301 -11 551 267 148 14 chr11 34074211 34074421 -116709132 + MIR SINE MIR 22 259 -3 641 283 108 0 chr11 34074726 34074938 -116708615 - ERVL LTR ERVL -5504 260 26 2462 65 16 7 chr11 34074938 34075246 -116708307 + AluY SINE Alu 1 311 0 715 144 9 9 chr11 34075288 34075399 -116708154 + MER66A LTR ERV1 365 475 -3 633 170 22 67 chr11 34075544 34075760 -116707793 + MER66A LTR ERV1 97 245 -233 1214 162 10 0 chr11 34075761 34075959 -116707594 - AluJb SINE Alu -10 302 103 299 250 221 15 chr11 34076304 34076440 -116707113 - MIR3 SINE MIR -43 165 2 1744 188 3 3 chr11 34076768 34077056 -116706497 + AluJb SINE Alu 5 292 -20 1153 135 0 0 chr11 34077169 34077332 -116706221 + AluSg/x SINE Alu 134 296 -16 2353 155 6 77 chr11 34077342 34077770 -116705783 - MER66B LTR ERV1 0 486 29 2087 122 34 3 chr11 34077770 34078064 -116705489 + AluSx SINE Alu 1 303 -9 2124 105 44 10 chr11 34078065 34078359 -116705194 + AluSp SINE Alu 1 304 -9 2353 155 6 77 chr11 34078359 34078451 -116705102 - MER66B LTR ERV1 -456 30 1 2259 113 0 0 chr11 34079300 34079600 -116703953 + AluY SINE Alu 1 300 -11 567 291 51 8 chr11 34079874 34080111 -116703442 - MIR SINE MIR -1 261 15 671 259 128 4 chr11 34082244 34082487 -116701066 - L1ME3A LINE L1 -229 5941 5669 2266 94 0 57 chr11 34082544 34082875 -116700678 + AluSx SINE Alu 1 312 0 681 255 82 57 chr11 34082877 34083102 -116700451 - LTR16C LTR ERVL -21 470 235 2682 49 0 0 chr11 34083102 34083410 -116700143 + AluY SINE Alu 1 308 -3 681 255 82 57 chr11 34083410 34083466 -116700087 - LTR16C LTR ERVL -256 235 182 441 70 0 0 chr11 34084065 34084159 -116699394 + Alu SINE Alu 225 318 0 798 206 6 6 chr11 34084721 34084886 -116698667 + FRAM SINE Alu 1 165 -11 1554 141 20 184 chr11 34084982 34085029 -116698524 - MLT2D LTR ERVL 0 414 361 279 0 0 0 chr11 34085029 34085060 -116698493 + (TG)n Simple_repeat Simple_repeat 2 32 0 1554 141 20 184 chr11 34085060 34085393 -116698160 - MLT2D LTR ERVL -53 361 131 2473 93 0 0 chr11 34085393 34085703 -116697850 + AluY SINE Alu 1 310 -1 1554 141 20 184 chr11 34085703 34085816 -116697737 - MLT2D LTR ERVL -283 131 1 539 313 38 0 chr11 34085820 34085980 -116697573 + MER117 DNA MER1_type 32 197 0 2408 109 0 0 chr11 34086079 34086391 -116697162 - AluSx SINE Alu 0 312 1 656 250 162 80 chr11 34086448 34086912 -116696641 + L1ME3A LINE L1 5669 6170 0 1032 114 0 0 chr11 34087146 34087278 -116696275 - AluSq/x SINE Alu -180 132 1 186 297 176 22 chr11 34087359 34087450 -116696103 - L2 LINE L2 -41 3231 3127 1768 171 0 14 chr11 34088383 34088676 -116694877 - AluJo SINE Alu -23 289 1 2243 108 0 7 chr11 34088839 34089134 -116694419 + AluSg SINE Alu 1 293 -17 530 153 0 0 chr11 34089168 34089253 -116694300 - FRAM SINE Alu -18 158 74 288 310 30 10 chr11 34089422 34089522 -116694031 - L2 LINE L2 0 3313 3212 367 158 79 0 chr11 34089897 34089973 -116693580 - L1MB3 LINE L1 -2 6181 6100 2078 133 0 7 chr11 34089985 34090278 -116693275 - AluSg SINE Alu -19 291 1 839 152 0 0 chr11 34090310 34090442 -116693111 - FLAM_C SINE Alu -1 132 1 2572 66 0 0 chr11 34090574 34090878 -116692675 - AluY SINE Alu -7 304 1 1824 115 4 0 chr11 34091346 34091599 -116691954 - AluSx SINE Alu 0 312 59 434 307 7 0 chr11 34092631 34092771 -116690782 + L1ME4a LINE L1 5696 5836 -285 1819 173 3 0 chr11 34092831 34093115 -116690438 - AluJo SINE Alu -27 285 1 2903 164 14 18 chr11 34093507 34093941 -116689612 + L1MB7 LINE L1 5466 5899 -285 2533 58 0 0 chr11 34093941 34094235 -116689318 + AluY SINE Alu 1 294 -17 2903 164 14 18 chr11 34094235 34094313 -116689240 + L1MB7 LINE L1 5899 5976 -208 1834 120 8 0 chr11 34094351 34094609 -116688944 + AluSq SINE Alu 1 260 -53 1704 150 0 4 chr11 34094987 34095254 -116688299 - AluSg SINE Alu -10 300 35 196 216 0 0 chr11 34095441 34095478 -116688075 - L2 LINE L2 0 3313 3277 1561 244 107 28 chr11 34095867 34096483 -116687070 + Charlie2a DNA MER1_type 1549 2213 -649 1035 121 0 20 chr11 34096501 34096650 -116686903 + AluSq/x SINE Alu 1 146 -166 748 219 285 17 chr11 34096656 34096863 -116686690 + Charlie2a DNA MER1_type 2343 2493 -369 2145 119 0 3 chr11 34096863 34097158 -116686395 + AluSx SINE Alu 1 294 -18 748 219 285 17 chr11 34097158 34097360 -116686193 + Charlie2a DNA MER1_type 2493 2862 0 214 269 224 13 chr11 34097524 34097680 -116685873 + MIR SINE MIR 72 260 -2 2129 68 0 19 chr11 34098089 34098355 -116685198 + AluY SINE Alu 36 296 -15 1463 129 9 0 chr11 34098640 34098857 -116684696 - AluSg/x SINE Alu -7 302 84 209 171 0 0 chr11 34099528 34099563 -116683990 + (TG)n Simple_repeat Simple_repeat 2 36 0 1874 132 54 60 chr11 34099564 34099913 -116683640 - MER7A DNA MER2_type 0 346 2 267 31 0 0 chr11 34099914 34099946 -116683607 + (TG)n Simple_repeat Simple_repeat 1 32 0 252 195 122 12 chr11 34100029 34100111 -116683442 + MIR SINE MIR 105 195 -67 577 288 241 22 chr11 34100204 34100607 -116682946 + L2 LINE L2 2819 3309 -4 1457 182 20 50 chr11 34101724 34102021 -116681532 - AluJb SINE Alu -24 288 1 871 254 125 10 chr11 34102125 34102428 -116681125 - MER46C DNA MER2_type 0 338 1 25 65 0 0 chr11 34102955 34103001 -116680552 + AT_rich Low_complexity Low_complexity 1 46 0 2243 105 27 0 chr11 34104308 34104604 -116678949 + AluSx SINE Alu 1 304 -8 2321 93 7 0 chr11 34105060 34105350 -116678203 - AluSg SINE Alu -18 292 1 270 237 186 0 chr11 34105372 34105469 -116678084 - MIR3 SINE MIR -5 203 89 324 0 0 0 chr11 34105545 34105581 -116677972 + (TAGA)n Simple_repeat Simple_repeat 3 38 0 2251 99 0 0 chr11 34105696 34105988 -116677565 - AluSx SINE Alu -20 292 1 1155 229 61 107 chr11 34108994 34109404 -116674149 - L1MC5 LINE L1 -36 7925 7498 2153 53 4 19 chr11 34109404 34109668 -116673885 + AluY SINE Alu 23 282 -29 261 0 0 0 chr11 34109671 34109700 -116673853 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2339 79 0 0 chr11 34109709 34109988 -116673565 + AluSc SINE Alu 1 279 -30 257 111 0 0 chr11 34109988 34110015 -116673538 + AluJb SINE Alu 1 306 0 1155 229 61 107 chr11 34110015 34110214 -116673339 - L1MC5 LINE L1 -473 7488 7330 339 130 111 0 chr11 34110275 34110329 -116673224 - MER8 DNA MER2_type 0 239 180 2371 113 89 34 chr11 34110337 34110580 -116672973 + Tigger2 DNA MER2_type 2281 2558 -160 1319 182 79 41 chr11 34110580 34110871 -116672682 + AluJo SINE Alu 4 305 -7 2371 113 89 34 chr11 34110871 34111042 -116672511 + Tigger2 DNA MER2_type 2558 2718 0 2438 85 0 3 chr11 34111343 34111650 -116671903 + AluSx SINE Alu 1 306 -6 2384 92 0 0 chr11 34112708 34113013 -116670540 - AluSx SINE Alu -7 305 1 2366 92 0 10 chr11 34113235 34113538 -116670015 - AluSg SINE Alu -10 300 1 2497 65 0 7 chr11 34113800 34114109 -116669444 - AluSc SINE Alu 0 309 3 186 270 79 16 chr11 34115523 34115586 -116667967 - MIR SINE MIR -168 94 28 384 279 23 107 chr11 34115869 34116084 -116667469 + L2 LINE L2 2963 3159 -113 2171 105 3 16 chr11 34116563 34116869 -116666684 + AluSx SINE Alu 1 302 -10 1754 101 4 8 chr11 34117216 34117482 -116666071 - AluY SINE Alu 0 308 44 389 123 0 0 chr11 34117488 34117545 -116666008 + AluS SINE Alu 1 57 -243 2156 111 0 17 chr11 34117749 34117880 -116665673 + AluSq SINE Alu 5 137 -176 2139 118 0 0 chr11 34117880 34118179 -116665374 + AluSg SINE Alu 1 299 0 2156 111 0 17 chr11 34118179 34118343 -116665210 + AluSq SINE Alu 137 296 -17 467 259 130 0 chr11 34118675 34118806 -116664747 - MIR3 SINE MIR -1 207 60 436 285 66 0 chr11 34119976 34120113 -116663440 + MIR SINE MIR 117 262 0 2197 124 7 0 chr11 34120167 34120465 -116663088 + AluJb SINE Alu 1 300 -12 1037 155 23 17 chr11 34120465 34120639 -116662914 + AluJb SINE Alu 134 308 -4 4016 93 27 30 chr11 34120764 34121358 -116662195 - LTR14B LTR ERVK 0 608 17 2004 107 52 17 chr11 34122031 34122321 -116661232 + AluSq SINE Alu 1 300 -13 374 197 150 39 chr11 34122760 34122887 -116660666 - L2 LINE L2 -4 3309 3169 796 164 8 0 chr11 34123276 34123404 -116660149 - FLAM_A SINE Alu -2 131 3 192 318 0 15 chr11 34123869 34123935 -116659618 - MIR SINE MIR -60 148 84 2597 63 0 0 chr11 34124064 34124364 -116659189 + AluSc SINE Alu 1 300 -9 5352 134 52 25 chr11 34124438 34125382 -116658171 - LTR5 LTR ERVK 0 969 1 469 184 58 0 chr11 34125648 34125735 -116657818 + AluJb SINE Alu 208 299 -13 672 211 146 71 chr11 34125736 34125890 -116657663 - L1M4 LINE L1 -945 5201 5060 1868 160 10 0 chr11 34125890 34126184 -116657369 - AluJb SINE Alu -15 297 1 672 211 146 71 chr11 34126184 34126251 -116657302 - L1M4 LINE L1 -1086 5060 4999 2315 73 0 0 chr11 34126251 34126524 -116657029 - AluY SINE Alu -22 289 17 672 211 146 71 chr11 34126524 34126581 -116656972 - L1M4 LINE L1 -1147 4999 4901 688 165 0 0 chr11 34126608 34126711 -116656842 - AluSg/x SINE Alu -18 292 190 679 125 116 0 chr11 34126706 34126818 -116656735 - AluJo/FLAM SINE Alu -186 126 2 * 1212 171 87 21 chr11 34126846 34127133 -116656420 - L1M4 LINE L1 -1300 4846 4541 1163 111 84 0 chr11 34127133 34127323 -116656230 + L1PA13 LINE L1 5955 6160 -3 754 181 47 72 chr11 34127710 34127781 -116655772 + MER5A DNA MER1_type 1 72 -117 1820 163 13 13 chr11 34127781 34128088 -116655465 + AluJb SINE Alu 1 307 -5 754 181 47 72 chr11 34128088 34128209 -116655344 + MER5A DNA MER1_type 72 188 -1 2125 115 7 0 chr11 34128218 34128504 -116655049 - AluSx SINE Alu -11 301 14 1865 143 52 3 chr11 34128902 34129189 -116654364 - AluJo SINE Alu -11 301 1 442 235 33 82 chr11 34130150 34130333 -116653220 - MER104 DNA Tc2 -5 175 2 665 252 141 66 chr11 34130396 34130773 -116652780 - MLT1L LTR MaLR -210 405 1 2169 129 0 0 chr11 34130882 34131184 -116652369 - AluSg SINE Alu -3 307 6 2114 135 0 3 chr11 34131195 34131484 -116652069 - AluSx SINE Alu -24 288 1 771 172 10 98 chr11 34131628 34131831 -116651722 - AluSg/x SINE Alu -4 308 124 2307 117 3 0 chr11 34133261 34133569 -116649984 - AluSx SINE Alu -1 311 3 280 226 97 21 chr11 34133633 34133726 -116649827 - L1ME4a LINE L1 -38 6083 5984 363 274 9 0 chr11 34133760 34133866 -116649687 - L1MC4 LINE L1 -1 8041 7935 728 98 10 0 chr11 34133866 34133968 -116649585 - FLAM_C SINE Alu -38 105 3 320 275 22 36 chr11 34134967 34135105 -116648448 - MIR SINE MIR -21 241 106 600 126 0 29 chr11 34135170 34135273 -116648280 - AluSg/x SINE Alu 0 310 211 1926 161 0 0 chr11 34136046 34136331 -116647222 - AluJb SINE Alu -27 285 1 404 313 63 13 chr11 34136336 34136524 -116647029 - MIR SINE MIR -65 197 1 2032 118 3 3 chr11 34136874 34137162 -116646391 + AluSx SINE Alu 1 288 -24 205 29 29 29 chr11 34137165 34137200 -116646353 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 1769 167 55 6 chr11 34137200 34137547 -116646006 - L1MB7 LINE L1 -7 6177 5814 3078 191 24 40 chr11 34137561 34137937 -116645616 - L1MB4 LINE L1 0 6180 5818 1611 159 36 40 chr11 34137937 34138238 -116645315 - AluJo SINE Alu -12 300 1 3078 191 24 40 chr11 34138238 34138537 -116645016 - L1MB4 LINE L1 -362 5818 5516 775 205 6 0 chr11 34139056 34139212 -116644341 + LTR31 LTR ERV1 387 543 -76 205 152 0 0 chr11 34139214 34139247 -116644306 + A-rich Low_complexity Low_complexity 2 34 0 933 187 23 0 chr11 34139859 34140030 -116643523 - FAM SINE Alu 0 175 1 528 226 0 17 chr11 34140047 34140162 -116643391 + MER81 DNA DNA 2 114 0 182 278 206 54 chr11 34140201 34140345 -116643208 - MIR SINE MIR -4 258 137 2241 109 3 0 chr11 34140345 34140638 -116642915 - AluSq SINE Alu -19 294 1 182 278 206 54 chr11 34140638 34140716 -116642837 - MIR SINE MIR -125 137 2 306 314 0 9 chr11 34141351 34141456 -116642097 - L2 LINE L2 -505 2809 2706 825 239 24 10 chr11 34141890 34142099 -116641454 + MER112 DNA MER1_type 12 223 -37 1949 122 35 29 chr11 34142986 34143297 -116640256 - AluSq SINE Alu 0 313 1 368 291 80 20 chr11 34144180 34144331 -116639222 + MIR SINE MIR 90 249 -13 48 105 0 0 chr11 34144372 34144553 -116639000 + AT_rich Low_complexity Low_complexity 1 181 0 341 247 0 13 chr11 34144591 34144668 -116638885 + L1MA7 LINE L1 6187 6262 -29 1793 157 0 42 chr11 34144669 34144982 -116638571 - AluJb SINE Alu -12 300 1 1669 138 8 23 chr11 34145122 34145383 -116638170 + AluJo SINE Alu 54 310 -2 2139 142 3 0 chr11 34145479 34145782 -116637771 + AluSp SINE Alu 2 305 -8 2278 102 7 0 chr11 34145794 34146097 -116637456 + AluSx SINE Alu 1 305 -7 2074 126 3 0 chr11 34146106 34146399 -116637154 + AluSx SINE Alu 1 294 -18 227 170 0 38 chr11 34146886 34146914 -116636639 + (TTCA)n Simple_repeat Simple_repeat 2 29 -23 2202 116 7 0 chr11 34146914 34147217 -116636336 - AluSx SINE Alu -7 305 1 227 170 0 38 chr11 34147217 34147241 -116636312 + (TTCA)n Simple_repeat Simple_repeat 29 52 0 430 312 124 30 chr11 34147278 34147512 -116636041 - L2 LINE L2 -40 3232 2977 213 39 0 0 chr11 34148800 34148826 -116634727 + (T)n Simple_repeat Simple_repeat 1 26 0 2531 79 0 0 chr11 34149006 34149311 -116634242 + AluSx SINE Alu 1 305 -7 1749 159 3 30 chr11 34149720 34150021 -116633532 + AluJo SINE Alu 1 293 -19 21 89 0 0 chr11 34150115 34150171 -116633382 + AT_rich Low_complexity Low_complexity 1 56 0 2333 88 0 3 chr11 34150286 34150581 -116632972 - AluSg SINE Alu -16 294 1 2558 47 0 3 chr11 34151799 34152095 -116631458 - AluY SINE Alu -16 295 1 2336 88 3 3 chr11 34153022 34153318 -116630235 + AluSx SINE Alu 1 296 -16 333 269 213 31 chr11 34153740 34153900 -116629653 + MIR3 SINE MIR 3 191 -17 271 324 81 7 chr11 34153978 34154114 -116629439 + MIR SINE MIR 73 218 -44 210 150 0 0 chr11 34154406 34154446 -116629107 + (TGAA)n Simple_repeat Simple_repeat 3 42 0 1857 177 10 0 chr11 34154890 34155195 -116628358 + AluSx SINE Alu 1 308 -4 970 162 0 45 chr11 34155212 34155391 -116628162 + AluJo SINE Alu 26 196 -116 1968 124 57 10 chr11 34155438 34155736 -116627817 - AluSx SINE Alu 0 312 1 27 0 0 0 chr11 34155799 34155826 -116627727 + AT_rich Low_complexity Low_complexity 1 27 0 2450 138 52 5 chr11 34156547 34156954 -116626599 + MSTA LTR MaLR 1 426 -2 2322 102 3 0 chr11 34157112 34157417 -116626136 - AluSq SINE Alu -7 306 1 2032 116 193 11 chr11 34157439 34157818 -116625735 + MER83 LTR ERV1 1 448 0 1706 143 27 48 chr11 34157866 34158160 -116625393 - AluJb SINE Alu -24 288 1 1997 123 7 14 chr11 34158205 34158498 -116625055 - AluSx SINE Alu -21 291 1 1369 191 0 0 chr11 34159094 34159324 -116624229 + MER46A DNA MER2_type 1 230 -6 2170 135 0 0 chr11 34161521 34161817 -116621736 - AluSq SINE Alu -17 296 1 251 266 75 12 chr11 34162783 34162921 -116620632 - MIR SINE MIR -51 157 28 2328 83 24 0 chr11 34163369 34163659 -116619894 - AluSx SINE Alu -15 297 1 1780 118 51 67 chr11 34163681 34163996 -116619557 - AluJb SINE Alu -1 311 2 367 127 32 16 chr11 34164081 34164144 -116619409 + MER6 DNA MER2_type -65 4294967294 -146 837 118 65 20 chr11 34164264 34164417 -116619136 - MSTB LTR MaLR -73 353 194 22 0 0 0 chr11 34164430 34164452 -116619101 + AT_rich Low_complexity Low_complexity 1 22 0 1326 154 66 39 chr11 34164453 34164712 -116618841 - AluSx SINE Alu -46 266 1 1078 136 10 45 chr11 34164715 34164914 -116618639 - MSTB LTR MaLR -234 192 1 911 188 5 21 chr11 34164914 34165100 -116618453 + L1MB8 LINE L1 5971 6153 -25 2130 133 0 10 chr11 34165308 34165617 -116617936 - AluSg SINE Alu -4 306 1 1966 142 10 0 chr11 34166490 34166779 -116616774 - AluJb SINE Alu -20 292 1 198 191 0 0 chr11 34167096 34167138 -116616415 + A-rich Low_complexity Low_complexity 1 42 0 186 43 0 0 chr11 34168218 34168241 -116615312 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3536 108 39 25 chr11 34168430 34168950 -116614603 + MER1A DNA MER1_type 1 527 0 406 282 0 0 chr11 34169315 34169418 -116614135 - MER5A DNA MER1_type -83 106 4 2073 115 24 0 chr11 34170237 34170524 -116613029 + AluSq SINE Alu 1 294 -19 2063 96 0 0 chr11 34170532 34170792 -116612761 + AluSc SINE Alu 42 301 -8 1892 234 74 26 chr11 34171257 34171786 -116611767 - MLT1H1 LTR MaLR -1 554 1 477 90 0 0 chr11 34171920 34171987 -116611566 + (TTC)n Simple_repeat Simple_repeat 1 67 0 1388 174 33 26 chr11 34171987 34172257 -116611296 - AluJo SINE Alu -38 274 3 33 25 0 0 chr11 34172706 34172746 -116610807 + AT_rich Low_complexity Low_complexity 1 40 0 856 143 78 0 chr11 34173045 34173199 -116610354 + L1MB7 LINE L1 6003 6168 -16 2181 136 0 13 chr11 34175202 34175336 -116608217 + AluSx SINE Alu 1 135 -177 2190 109 3 0 chr11 34175336 34175619 -116607934 + AluSx SINE Alu 1 284 -28 261 0 0 0 chr11 34175619 34175648 -116607905 + (CA)n Simple_repeat Simple_repeat 2 30 0 2181 136 0 13 chr11 34175648 34175828 -116607725 + AluSx SINE Alu 133 312 0 358 155 0 0 chr11 34176558 34176616 -116606937 - MLT1C LTR MaLR -8 497 440 2413 95 7 0 chr11 34176616 34176963 -116606590 + AluSg SINE Alu 1 349 0 1138 211 88 60 chr11 34176963 34177358 -116606195 - MLT1C LTR MaLR -52 415 5 240 182 52 39 chr11 34177743 34177820 -116605733 + LTR33A LTR ERVL 446 523 0 26 30 0 0 chr11 34177849 34177882 -116605671 + AT_rich Low_complexity Low_complexity 1 33 0 1799 134 0 0 chr11 34177882 34178176 -116605377 + AluSx SINE Alu 30 323 0 1090 160 48 39 chr11 34178245 34178266 -116605287 + L1MC3 LINE L1 6006 6025 -1760 2293 92 7 0 chr11 34178266 34178560 -116604993 - AluSx SINE Alu -16 296 1 1090 160 48 39 chr11 34178560 34178769 -116604784 + L1MC3 LINE L1 6025 6238 -1547 2255 103 10 0 chr11 34178771 34179063 -116604490 + AluSx SINE Alu 3 297 -15 1132 141 0 0 chr11 34179063 34179226 -116604327 + AluSg/x SINE Alu 134 296 -16 519 196 10 0 chr11 34179227 34179329 -116604224 + L1MC3 LINE L1 6224 6326 -1459 800 279 17 86 chr11 34179485 34179730 -116603823 + MER102b DNA MER1_type 1 215 -1213 2232 99 3 10 chr11 34179730 34180034 -116603519 - AluSx SINE Alu -10 302 1 800 279 17 86 chr11 34180034 34180150 -116603403 + MER102b DNA MER1_type 215 337 -4 2536 67 0 6 chr11 34180353 34180666 -116602887 - AluY SINE Alu 0 311 1 1693 221 63 50 chr11 34182219 34182306 -116601247 - MLT1D LTR MaLR 0 505 421 2465 86 0 0 chr11 34182306 34182608 -116600945 - AluSg SINE Alu -8 302 1 1693 221 63 50 chr11 34182608 34182999 -116600554 - MLT1D LTR MaLR -84 421 21 2270 216 96 84 chr11 34183261 34183520 -116600033 + L1MC5 LINE L1 6693 6948 -1013 2013 136 7 0 chr11 34183520 34183807 -116599746 - AluSq SINE Alu -18 295 7 2270 216 96 84 chr11 34183807 34184200 -116599353 + L1MC5 LINE L1 6948 7363 -598 2126 104 0 0 chr11 34184200 34184496 -116599057 + AluY SINE Alu 16 311 0 2270 216 96 84 chr11 34184496 34184800 -116598753 + L1MC5 LINE L1 7363 7662 -299 2006 125 0 22 chr11 34184813 34185132 -116598421 - AluSx SINE Alu 0 312 1 4669 157 45 2 chr11 34185132 34185969 -116597584 - L1MC1 LINE L1 -3 6330 5458 1681 123 4 15 chr11 34185970 34186231 -116597322 + AluSx SINE Alu 54 311 -1 419 103 23 103 chr11 34186519 34186574 -116596979 + L1MA9 LINE L1 6002 6049 -263 1739 194 3 0 chr11 34186574 34186868 -116596685 + AluJo SINE Alu 1 295 -17 419 103 23 103 chr11 34186868 34186899 -116596654 + L1MA9 LINE L1 6049 6081 -231 2393 101 0 0 chr11 34186978 34187275 -116596278 - AluSg SINE Alu -13 297 1 612 142 44 0 chr11 34187466 34187579 -116595974 + L1MB8 LINE L1 6001 6118 -60 2055 143 16 0 chr11 34187946 34188253 -116595300 - AluSx SINE Alu 0 312 1 2219 119 3 0 chr11 34188260 34188563 -116594990 - AluSx SINE Alu -8 304 1 417 234 7 55 chr11 34188951 34189096 -116594457 - MIR SINE MIR -33 229 92 262 328 44 37 chr11 34189110 34189406 -116594147 + L2 LINE L2 2675 2972 -342 420 282 5 74 chr11 34189566 34189768 -116593785 + L2 LINE L2 3107 3294 -19 2455 71 3 0 chr11 34190066 34190360 -116593193 + AluY SINE Alu 1 295 -16 189 0 0 0 chr11 34190360 34190381 -116593172 + (GA)n Simple_repeat Simple_repeat 2 22 0 2133 95 0 0 chr11 34190626 34190899 -116592654 + AluSq SINE Alu 39 311 -2 187 311 121 8 chr11 34191233 34191365 -116592188 - L2 LINE L2 -40 3232 3086 180 77 0 0 chr11 34191566 34191592 -116591961 + (TG)n Simple_repeat Simple_repeat 2 27 0 844 147 51 70 chr11 34191723 34191879 -116591674 - AluJo SINE Alu -159 153 1 2312 91 3 19 chr11 34191884 34192193 -116591360 - AluSq SINE Alu -9 304 1 2381 85 0 0 chr11 34192207 34192500 -116591053 - AluSc SINE Alu -16 293 1 2453 168 16 9 chr11 34192910 34193333 -116590220 - MSTB LTR MaLR 0 426 1 1672 245 29 8 chr11 34193569 34193953 -116589600 + LTR40b LTR ERVL 5 396 -66 2188 101 7 0 chr11 34193963 34194259 -116589294 + AluSx SINE Alu 1 298 -14 379 220 97 112 chr11 34195010 34195278 -116588275 - MLT1J LTR MaLR -50 461 198 2074 134 7 0 chr11 34195290 34195595 -116587958 + AluSq SINE Alu 1 307 -6 336 163 1 51 chr11 34195595 34195697 -116587856 - L1P3 LINE L1 -673 5481 5388 304 245 57 38 chr11 34195710 34195816 -116587737 + L1ME3A LINE L1 6058 6165 -5 189 74 0 0 chr11 34196006 34196033 -116587520 + (CA)n Simple_repeat Simple_repeat 1 27 0 2103 118 17 0 chr11 34196053 34196342 -116587211 + AluSx SINE Alu 1 294 -18 739 274 40 50 chr11 34197022 34197299 -116586254 - MLT1J LTR MaLR 0 511 238 24 53 0 0 chr11 34197582 34197620 -116585933 + AT_rich Low_complexity Low_complexity 1 38 0 214 266 156 37 chr11 34197675 34197784 -116585769 - L2 LINE L2 0 3272 3151 2063 95 53 14 chr11 34197893 34198178 -116585375 - AluSq SINE Alu -17 296 1 1858 105 127 0 chr11 34198561 34198828 -116584725 - AluSx SINE Alu -6 306 6 2111 177 101 40 chr11 34198831 34199334 -116584219 - LTR64 LTR ERVK -24 534 1 450 117 117 0 chr11 34199345 34199422 -116584131 + LTR1 LTR ERV1 83 168 -617 279 0 0 0 chr11 34199422 34199453 -116584100 + (TG)n Simple_repeat Simple_repeat 2 32 0 414 151 14 14 chr11 34199491 34199564 -116583989 + LTR1 LTR ERV1 91 163 -622 378 0 0 0 chr11 34199567 34199609 -116583944 + (TG)n Simple_repeat Simple_repeat 2 43 0 265 262 39 19 chr11 34199836 34199939 -116583614 - L2 LINE L2 0 3272 3168 803 223 34 48 chr11 34200063 34200332 -116583221 - L1ME1 LINE L1 -2 6164 5900 244 143 0 82 chr11 34200398 34200447 -116583106 - Alu SINE Alu -9 292 248 697 191 6 37 chr11 34200464 34200626 -116582927 - L1ME1 LINE L1 -311 5855 5699 2604 154 60 23 chr11 34200643 34201156 -116582397 + L1MB7 LINE L1 5588 6119 -65 2195 99 0 7 chr11 34201159 34201453 -116582100 - AluSx SINE Alu -20 292 1 764 227 121 0 chr11 34201470 34201668 -116581885 - L1ME1 LINE L1 -458 5708 5487 2412 66 0 3 chr11 34202458 34202761 -116580792 + AluY SINE Alu 1 302 -9 2064 118 3 44 chr11 34204080 34204395 -116579158 + AluSq SINE Alu 1 302 -11 895 136 102 0 chr11 34205447 34205623 -116577930 - L1MA4 LINE L1 -14 6286 6093 2468 88 0 0 chr11 34206241 34206548 -116577005 + AluSg SINE Alu 1 307 -3 535 247 114 0 chr11 34206926 34207084 -116576469 + MIR SINE MIR 12 187 -75 2342 78 3 3 chr11 34207313 34207609 -116575944 - AluSp SINE Alu -17 296 1 1392 166 85 7 chr11 34208256 34208527 -116575026 + MER58B DNA MER1_type 49 340 -1 2351 84 3 0 chr11 34208985 34209281 -116574272 - AluY SINE Alu -14 297 1 21 0 0 0 chr11 34209518 34209539 -116574014 + AT_rich Low_complexity Low_complexity 1 21 0 220 367 6 17 chr11 34210100 34210280 -116573273 + (CCA)n Simple_repeat Simple_repeat 1 178 0 776 174 81 50 chr11 34210924 34211088 -116572465 - FAM SINE Alu -5 170 5 603 252 130 108 chr11 34211518 34211955 -116571598 + L2 LINE L2 2867 3313 0 288 227 43 85 chr11 34212636 34212777 -116570776 + MIR SINE MIR 100 234 -28 1902 124 16 42 chr11 34213361 34213667 -116569886 - AluSx SINE Alu -14 298 1 2158 97 3 31 chr11 34214443 34214762 -116568791 + AluY SINE Alu 1 310 -1 1923 155 3 0 chr11 34214775 34215065 -116568488 + AluSx SINE Alu 20 310 -2 25 51 0 0 chr11 34217157 34217196 -116566357 + AT_rich Low_complexity Low_complexity 1 39 0 23 0 0 0 chr11 34217627 34217650 -116565903 + AT_rich Low_complexity Low_complexity 1 23 0 286 328 107 15 chr11 34217933 34218064 -116565489 + MIR3 SINE MIR 47 189 -19 226 313 45 0 chr11 34219191 34219258 -116564295 + MIR SINE MIR 2 71 -191 403 167 83 12 chr11 34219288 34219372 -116564181 + MIR SINE MIR 171 260 -2 201 94 0 0 chr11 34219634 34219666 -116563887 + (A)n Simple_repeat Simple_repeat 1 32 0 349 214 150 14 chr11 34221534 34221674 -116561879 - L1ME4a LINE L1 -1 6120 5962 261 217 250 0 chr11 34221721 34221841 -116561712 - L1ME4a LINE L1 -260 5861 5712 1679 197 27 0 chr11 34221925 34222225 -116561328 + AluJb SINE Alu 1 308 -4 1584 154 60 15 chr11 34222265 34222531 -116561022 - AluJb SINE Alu -22 290 13 2263 97 0 3 chr11 34222984 34223284 -116560269 - AluSg SINE Alu -11 299 1 180 0 0 0 chr11 34223293 34223313 -116560240 + (T)n Simple_repeat Simple_repeat 1 20 0 269 245 0 0 chr11 34223514 34223567 -116559986 + MIR SINE MIR 81 133 -75 649 231 58 0 chr11 34224420 34224599 -116558954 - MER58A DNA MER1_type 0 224 35 243 270 0 48 chr11 34224647 34224710 -116558843 + L2 LINE L2 3213 3272 0 196 259 224 35 chr11 34224774 34224890 -116558663 + MIR SINE MIR 3 140 -122 1650 99 144 4 chr11 34224941 34225204 -116558349 - AluSg SINE Alu 0 300 1 2910 0 0 0 chr11 34225213 34225524 -116558029 - AluYa5 SINE Alu 0 311 1 202 327 190 15 chr11 34225551 34225756 -116557797 + L3b LINE CR1 1339 1579 -4 1988 102 57 78 chr11 34225898 34226270 -116557283 - THE1B LTR MaLR 0 364 1 11108 86 47 6 chr11 34226270 34227788 -116555765 - THE1B-int LTR MaLR 0 1580 1 2329 126 22 22 chr11 34227788 34227914 -116555639 - THE1B LTR MaLR 0 364 239 2362 75 0 33 chr11 34227914 34228221 -116555332 - AluY SINE Alu -14 297 1 2329 126 22 22 chr11 34228221 34228458 -116555095 - THE1B LTR MaLR -124 240 1 1618 178 50 3 chr11 34230601 34230899 -116552654 + AluJb SINE Alu 1 312 0 289 266 0 0 chr11 34233722 34233786 -116549767 - L3 LINE CR1 -69 1508 1445 231 397 95 4 chr11 34233810 34234042 -116549511 - L2 LINE L2 -1313 2001 1749 1045 165 0 6 chr11 34234606 34234776 -116548777 - FAM SINE Alu -5 170 2 574 365 80 25 chr11 34234838 34235436 -116548117 - L2 LINE L2 -18 3295 2665 504 215 120 19 chr11 34235485 34235643 -116547910 + MER112 DNA MER1_type 82 255 -5 459 362 36 7 chr11 34235700 34235979 -116547574 - L2 LINE L2 -731 2583 2297 5806 119 33 13 chr11 34236017 34236679 -116546874 - L1PA16 LINE L1 -9 6157 5458 2045 151 3 0 chr11 34236679 34236984 -116546569 - AluSx SINE Alu -6 306 1 5806 119 33 13 chr11 34236984 34237424 -116546129 - L1PA16 LINE L1 -708 5458 5028 1704 183 0 7 chr11 34237523 34237802 -116545751 + AluJo SINE Alu 3 279 -33 713 194 6 0 chr11 34237848 34238023 -116545530 + GA-rich Low_complexity Low_complexity 1 176 0 1006 243 100 82 chr11 34238171 34238546 -116545007 - MLT1F1 LTR MaLR -37 530 143 1727 72 0 9 chr11 34238546 34238769 -116544784 + AluY SINE Alu 87 307 -4 1006 243 100 82 chr11 34238769 34238915 -116544638 - MLT1F1 LTR MaLR -424 143 1 7036 110 13 6 chr11 34238968 34240819 -116542734 + L1PA8 LINE L1 4301 6172 0 2003 132 7 0 chr11 34241114 34241437 -116542116 - AluSg SINE Alu 0 325 1 1399 216 20 10 chr11 34241485 34241786 -116541767 - AluJb SINE Alu -8 304 1 764 239 31 89 chr11 34241983 34242187 -116541366 + L1ME LINE L1 5414 5595 -526 1792 122 32 32 chr11 34242187 34242502 -116541051 + AluSc SINE Alu 1 315 0 764 239 31 89 chr11 34242502 34242604 -116540949 + L1ME LINE L1 5595 5701 -420 293 138 0 52 chr11 34242694 34242752 -116540801 + L1M4 LINE L1 5563 5617 -557 * 2934 63 0 18 chr11 34242750 34243133 -116540420 + L1PA6 LINE L1 5586 5961 -193 5092 42 0 2 chr11 34243135 34243764 -116539789 - L1P LINE L1 -3719 2427 1798 13096 34 0 0 chr11 34243764 34246116 -116537437 + L1PA4 LINE L1 3792 6155 0 3335 279 85 39 chr11 34246201 34247551 -116536002 + L1MEc LINE L1 44 1508 -4888 1979 83 65 0 chr11 34247551 34247827 -116535726 - AluSg SINE Alu -16 294 1 3335 279 85 39 chr11 34247827 34248387 -116535166 + L1MEc LINE L1 1508 2041 -4355 342 189 0 189 chr11 34248396 34248447 -116535106 + MER58A DNA MER1_type 2 61 -280 217 0 61 0 chr11 34248447 34248480 -116535073 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 342 189 0 189 chr11 34248480 34248495 -116535058 + MER58A DNA MER1_type 61 43 -298 2026 121 7 0 chr11 34248495 34248775 -116534778 - AluSx SINE Alu -30 282 1 342 189 0 189 chr11 34248775 34248818 -116534735 + MER58A DNA MER1_type 42 91 -133 421 145 60 0 chr11 34248820 34248903 -116534650 + L1MB4 LINE L1 6093 6180 0 2410 206 22 50 chr11 34248997 34249677 -116533876 + L1MEc LINE L1 2341 3001 -3214 230 71 0 0 chr11 34249677 34249705 -116533848 + Alu SINE Alu 87 114 -188 599 66 74 0 chr11 34249705 34249826 -116533727 + GA-rich Low_complexity Low_complexity 5 134 0 725 152 101 29 chr11 34249835 34249973 -116533580 + AluJb SINE Alu 135 282 -30 210 171 0 0 chr11 34249982 34250023 -116533530 + (CAGA)n Simple_repeat Simple_repeat 2 42 0 1633 198 36 68 chr11 34250062 34250351 -116533202 - L1M4 LINE L1 -3213 2933 2636 1958 150 0 0 chr11 34250351 34250658 -116532895 - AluSx SINE Alu -5 307 1 1633 198 36 68 chr11 34250658 34250735 -116532818 - L1M4 LINE L1 -3510 2636 2558 204 40 0 0 chr11 34250735 34250760 -116532793 + (TG)n Simple_repeat Simple_repeat 2 26 0 1633 198 36 68 chr11 34250760 34250861 -116532692 - L1M4 LINE L1 -3588 2558 2480 894 217 38 4 chr11 34250915 34251178 -116532375 + L1MEc LINE L1 2997 3268 -2947 992 97 0 0 chr11 34251182 34251316 -116532237 - AluSc SINE Alu -7 302 169 697 226 41 41 chr11 34251332 34251575 -116531978 + L1MEc LINE L1 3263 3505 -2710 2950 179 37 13 chr11 34251579 34252121 -116531432 - MER68 LTR ERV1 -7 555 1 2673 233 92 36 chr11 34252128 34252973 -116530580 + L1MEc LINE L1 3506 4302 -1913 653 236 0 0 chr11 34252973 34253096 -116530457 + FLAM_A SINE Alu 1 123 -10 2673 233 92 36 chr11 34253096 34253778 -116529775 + L1MEc LINE L1 4302 5139 -1076 543 265 77 6 chr11 34254147 34254317 -116529236 - MIR SINE MIR -78 184 3 38 68 0 0 chr11 34254329 34254402 -116529151 + AT_rich Low_complexity Low_complexity 1 73 0 202 220 0 0 chr11 34254780 34254830 -116528723 + (TTA)n Simple_repeat Simple_repeat 2 51 0 933 316 103 66 chr11 34254934 34255140 -116528413 + L2 LINE L2 1528 1725 -1589 2259 92 23 0 chr11 34255140 34255443 -116528110 - AluSg SINE Alu 0 310 1 933 316 103 66 chr11 34255443 34255732 -116527821 + L2 LINE L2 1725 2002 -1312 228 67 0 0 chr11 34255732 34255762 -116527791 + (CA)n Simple_repeat Simple_repeat 2 31 0 933 316 103 66 chr11 34255762 34256462 -116527091 + L2 LINE L2 2002 2768 -546 2276 105 7 0 chr11 34256604 34256909 -116526644 - AluSc SINE Alu -2 307 1 2081 103 4 4 chr11 34256998 34257279 -116526274 + AluSx SINE Alu 1 281 -31 318 325 65 8 chr11 34257454 34257577 -116525976 + L2 LINE L2 3179 3308 -5 2357 95 3 0 chr11 34257577 34257881 -116525672 - AluSx SINE Alu -7 305 1 2115 86 7 4 chr11 34258868 34259148 -116524405 + AluY SINE Alu 1 281 -30 240 35 0 0 chr11 34259153 34259182 -116524371 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 31 0 0 0 chr11 34259533 34259564 -116523989 + AT_rich Low_complexity Low_complexity 1 31 0 264 167 0 0 chr11 34259828 34259876 -116523677 + (TA)n Simple_repeat Simple_repeat 1 48 0 29 28 0 0 chr11 34260063 34260099 -116523454 + AT_rich Low_complexity Low_complexity 1 36 0 302 245 49 35 chr11 34261035 34261178 -116522375 - L1ME4a LINE L1 -96 6025 5881 3665 109 78 49 chr11 34261500 34262214 -116521339 - Tigger3b DNA MER2_type 0 1232 498 3106 82 48 0 chr11 34262174 34262612 -116520941 + L1PA15 LINE L1 5699 6157 -8 1123 121 12 0 chr11 34262615 34262788 -116520765 - L1MB4 LINE L1 -17 6163 5989 1465 231 55 28 chr11 34262797 34263195 -116520358 - L1ME1 LINE L1 -67 6099 5691 3124 139 35 26 chr11 34263200 34263412 -116520141 - Tigger3b DNA MER2_type -2483 545 336 2383 97 3 0 chr11 34263412 34263721 -116519832 - AluSg SINE Alu 0 310 1 3124 139 35 26 chr11 34263721 34264047 -116519506 - Tigger3b DNA MER2_type -2692 336 2 1397 244 109 35 chr11 34264311 34264832 -116518721 - HAL1 LINE L1 -566 1941 1382 1573 246 182 18 chr11 34264839 34265220 -116518333 - HAL1 LINE L1 -1178 1329 1012 2319 152 62 0 chr11 34265220 34265621 -116517932 - MSTB LTR MaLR 0 426 1 1573 246 182 18 chr11 34265621 34265910 -116517643 - HAL1 LINE L1 -1495 1012 549 392 264 73 45 chr11 34265949 34266127 -116517426 + MER63A DNA MER1_type 27 209 -1 411 254 139 29 chr11 34266165 34266338 -116517215 - HAL1 LINE L1 -2044 463 272 279 204 91 0 chr11 34266373 34266461 -116517092 - HAL1 LINE L1 -2312 195 100 308 280 112 0 chr11 34266580 34266687 -116516866 - L2 LINE L2 -1 3312 3194 2242 105 3 0 chr11 34266687 34266983 -116516570 - AluSq SINE Alu -16 297 1 260 154 0 0 chr11 34267006 34267045 -116516508 + U2 snRNA snRNA 1 39 -149 332 293 120 30 chr11 34268390 34268557 -116514996 + MIR3 SINE MIR 19 200 -8 2783 258 83 74 chr11 34268973 34269908 -116513645 - MER45C DNA AcHobo -9 944 1 1289 119 0 0 chr11 34270288 34270493 -116513060 + AluSg/x SINE Alu 133 337 0 234 91 0 0 chr11 34271216 34271249 -116512304 + (CAGA)n Simple_repeat Simple_repeat 4 36 0 248 191 0 0 chr11 34271992 34272034 -116511519 - L2 LINE L2 -7 3265 3224 188 333 0 0 chr11 34272002 34272068 -116511485 - MIR SINE MIR -11 251 186 * 2020 127 3 3 chr11 34272288 34272606 -116510947 - AluSx SINE Alu 0 318 1 440 323 42 61 chr11 34273561 34273951 -116509602 - L2 LINE L2 -238 3034 2660 2370 49 0 7 chr11 34274197 34274511 -116509042 - AluY SINE Alu 0 312 1 297 278 202 71 chr11 34274587 34274939 -116508614 + LTR67 LTR ERVL 154 551 -6 261 344 123 0 chr11 34275108 34275271 -116508282 - L2 LINE L2 -1096 2218 2036 872 282 52 8 chr11 34275628 34275876 -116507677 + LTR33 LTR ERVL 6 264 -257 1228 206 5 0 chr11 34275876 34276094 -116507459 + AluJo SINE Alu 26 244 -68 210 71 0 0 chr11 34276156 34276184 -116507369 + (A)n Simple_repeat Simple_repeat 1 28 0 808 250 22 52 chr11 34276186 34276458 -116507095 + LTR33 LTR ERVL 258 521 0 187 296 139 61 chr11 34276814 34277044 -116506509 - L2 LINE L2 -672 2642 2395 266 265 105 50 chr11 34277784 34277965 -116505588 - MLT1L LTR MaLR -1 614 424 382 260 4 3 chr11 34278059 34278155 -116505398 - MLT1L LTR MaLR -329 259 149 234 0 0 0 chr11 34278362 34278388 -116505165 + (A)n Simple_repeat Simple_repeat 1 26 0 29 28 0 0 chr11 34278593 34278629 -116504924 + AT_rich Low_complexity Low_complexity 1 36 0 1762 158 10 17 chr11 34278675 34278966 -116504587 + AluJo SINE Alu 1 289 -23 2931 81 15 0 chr11 34279438 34279844 -116503709 - L1PA5 LINE L1 -5 6149 5738 41348 60 6 2 chr11 34279845 34285943 -116497610 - L1PA5 LINE L1 -29 6125 1 556 259 24 35 chr11 34286041 34286201 -116497352 + MIR SINE MIR 4 176 -32 213 196 65 0 chr11 34286212 34286258 -116497295 - L2 LINE L2 -4 3309 3261 4552 92 24 8 chr11 34287458 34288125 -116495428 - L1MA2 LINE L1 0 6304 5627 2449 74 0 0 chr11 34288373 34288671 -116494882 + AluY SINE Alu 1 298 -13 186 43 0 0 chr11 34289531 34289554 -116493999 + (A)n Simple_repeat Simple_repeat 1 23 0 2008 126 31 0 chr11 34290201 34290487 -116493066 + AluSx SINE Alu 1 295 -17 1509 127 24 0 chr11 34291164 34291417 -116492136 + L1MC1 LINE L1 5254 5512 -832 699 135 36 0 chr11 34291417 34291514 -116492039 + L1MC1 LINE L1 6201 6315 -18 36 0 0 0 chr11 34291517 34291553 -116492000 + AT_rich Low_complexity Low_complexity 1 36 0 1167 257 136 15 chr11 34291839 34292295 -116491258 - LTR33 LTR ERVL 0 521 11 575 305 27 42 chr11 34292556 34292818 -116490735 - MLT1L LTR MaLR 0 615 358 754 336 129 19 chr11 34293045 34293417 -116490136 + L2 LINE L2 2857 3269 -3 21 0 0 0 chr11 34293646 34293667 -116489886 + AT_rich Low_complexity Low_complexity 1 21 0 1430 180 8 4 chr11 34294683 34294933 -116488620 + AluJo SINE Alu 49 299 -13 185 235 20 20 chr11 34295261 34295312 -116488241 + L2 LINE L2 3217 3267 -5 2287 104 0 13 chr11 34295804 34296112 -116487441 + AluSg SINE Alu 1 304 -6 2185 125 3 0 chr11 34296129 34296434 -116487119 + AluSq SINE Alu 1 306 -7 461 273 186 5 chr11 34296447 34296667 -116486886 + MIR SINE MIR 3 262 0 2267 98 3 3 chr11 34296735 34297031 -116486522 + AluSg SINE Alu 1 296 -14 183 42 0 0 chr11 34297042 34297066 -116486487 + (CA)n Simple_repeat Simple_repeat 2 25 0 2177 114 3 3 chr11 34297489 34297796 -116485757 - AluSx SINE Alu -5 307 1 24 0 0 0 chr11 34300052 34300076 -116483477 + AT_rich Low_complexity Low_complexity 1 24 0 1433 158 4 0 chr11 34301219 34301453 -116482100 - MER46A DNA MER2_type -1 235 1 831 247 40 13 chr11 34301820 34302047 -116481506 - L2 LINE L2 0 3313 3081 207 0 0 0 chr11 34302175 34302198 -116481355 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1577 176 0 18 chr11 34302209 34302481 -116481072 - AluJo SINE Alu -41 271 5 352 279 106 11 chr11 34302567 34302832 -116480721 - L1ME4a LINE L1 -240 5881 5592 1434 182 26 11 chr11 34302850 34303119 -116480434 + AluJb SINE Alu 18 290 -22 240 167 50 0 chr11 34303130 34303190 -116480363 - L1ME4a LINE L1 -675 5567 5505 189 0 0 0 chr11 34303282 34303303 -116480250 + (TTTTA)n Simple_repeat Simple_repeat 1 21 0 1549 288 164 36 chr11 34303321 34303851 -116479702 - L2 LINE L2 0 3313 2852 2531 70 0 0 chr11 34303851 34304152 -116479401 - AluSc SINE Alu -8 301 1 1549 288 164 36 chr11 34304152 34304604 -116478949 - L2 LINE L2 -461 2852 2183 30 0 0 0 chr11 34304978 34305008 -116478545 + AT_rich Low_complexity Low_complexity 1 30 0 2509 233 49 10 chr11 34305597 34306823 -116476730 + L1MC4 LINE L1 6468 7898 -144 262 324 0 19 chr11 34306966 34307071 -116476482 + L1MEd LINE L1 103 205 -5914 830 267 64 63 chr11 34307345 34307861 -116475692 + L1MEd LINE L1 511 1030 -5089 2255 79 0 0 chr11 34307861 34308141 -116475412 + AluY SINE Alu 16 295 -16 830 267 64 63 chr11 34308141 34308310 -116475243 + L1MEd LINE L1 1030 1197 -4922 2329 118 36 36 chr11 34308434 34308567 -116474986 - L1MC1 LINE L1 0 6333 6201 2202 109 104 15 chr11 34308567 34308960 -116474593 + MSTA LTR MaLR 1 428 0 2329 118 36 36 chr11 34308960 34309180 -116474373 - L1MC1 LINE L1 -132 6201 5977 2106 117 3 3 chr11 34309180 34309478 -116474075 - AluSq SINE Alu -15 298 1 2329 118 36 36 chr11 34309478 34309540 -116474013 - L1MC1 LINE L1 -355 5978 5917 1903 157 45 22 chr11 34309540 34309899 -116473654 - L1MC1 LINE L1 -743 5403 5074 2575 62 0 0 chr11 34309899 34310204 -116473349 + AluY SINE Alu 1 305 -6 1903 157 45 22 chr11 34310204 34310384 -116473169 - L1MC1 LINE L1 -1072 5074 4900 29 70 0 0 chr11 34310627 34310684 -116472869 + AT_rich Low_complexity Low_complexity 1 57 0 182 220 60 40 chr11 34310684 34310734 -116472819 - MIR3 SINE MIR -13 195 145 224 404 21 11 chr11 34310891 34310985 -116472568 - MIR3 SINE MIR -52 156 62 194 243 114 43 chr11 34311251 34311321 -116472232 + L2 LINE L2 3150 3224 -48 7320 43 1 1 chr11 34311672 34312582 -116470971 + L1P LINE L1 3614 4523 -1623 1063 96 0 0 chr11 34312589 34312735 -116470818 + L1PA6 LINE L1 6004 6149 -5 2270 105 0 0 chr11 34313221 34313516 -116470037 + AluSx SINE Alu 3 297 -15 27 0 0 0 chr11 34314080 34314107 -116469446 + AT_rich Low_complexity Low_complexity 1 27 0 1810 138 31 31 chr11 34314569 34314859 -116468694 - AluJb SINE Alu -22 290 1 1565 165 0 20 chr11 34315012 34315267 -116468286 - AluJo SINE Alu -62 250 1 1119 232 65 96 chr11 34315275 34315607 -116467946 - L1MC4 LINE L1 -88 7954 7613 1869 124 4 0 chr11 34315607 34315872 -116467681 - AluSx SINE Alu -3 309 44 1119 232 65 96 chr11 34315872 34315927 -116467626 - L1MC4 LINE L1 -429 7613 7558 1362 113 0 5 chr11 34315927 34316131 -116467422 - L1PA15 LINE L1 0 6165 5963 1119 232 65 96 chr11 34316131 34316145 -116467408 - L1MC4 LINE L1 -484 7558 7545 2735 39 0 0 chr11 34316145 34316456 -116467097 - AluY SINE Alu 0 311 1 1119 232 65 96 chr11 34316456 34316728 -116466825 - L1MC4 LINE L1 -497 7545 7300 595 204 61 8 chr11 34316793 34316925 -116466628 + L2 LINE L2 3171 3309 -4 260 399 53 15 chr11 34316920 34317053 -116466500 + L2 LINE L2 3112 3249 -23 * 36 62 0 0 chr11 34317144 34317208 -116466345 + AT_rich Low_complexity Low_complexity 1 64 0 3209 35 13 2 chr11 34317612 34318008 -116465545 + L1PA5 LINE L1 5738 6137 -17 207 0 0 0 chr11 34318012 34318035 -116465518 + (TA)n Simple_repeat Simple_repeat 2 24 0 550 295 24 24 chr11 34318598 34318764 -116464789 + MIR3 SINE MIR 15 180 -28 24 0 0 0 chr11 34318898 34318922 -116464631 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr11 34318968 34318989 -116464564 + AT_rich Low_complexity Low_complexity 1 21 0 673 203 8 0 chr11 34319158 34319286 -116464267 - FLAM_A SINE Alu -3 130 2 1361 157 97 41 chr11 34319551 34319838 -116463715 + AluJo SINE Alu 1 302 0 270 351 94 10 chr11 34320741 34320943 -116462610 - L3b LINE CR1 -87 1496 1278 1964 146 3 3 chr11 34321231 34321519 -116462034 - AluJb SINE Alu -24 288 1 198 118 0 0 chr11 34321734 34321768 -116461785 + (CAA)n Simple_repeat Simple_repeat 1 34 0 732 243 147 22 chr11 34322030 34322127 -116461426 - HAL1 LINE L1 -115 2392 2308 4428 193 113 100 chr11 34322127 34323860 -116459693 + MER52A LTR ERV1 1 1755 0 732 243 147 22 chr11 34323860 34324075 -116459478 - HAL1 LINE L1 -199 2308 2041 393 309 41 36 chr11 34324814 34325008 -116458545 + MER110-int LTR ERV1 2117 2311 -4490 564 280 50 80 chr11 34325357 34325657 -116457896 + MER110-int LTR ERV1 180 470 -4177 11637 206 18 11 chr11 34326076 34327427 -116456126 - L1 LINE L1 -1038 5108 3729 1912 156 10 0 chr11 34327427 34327728 -116455825 - AluSx SINE Alu -8 304 1 11637 206 18 11 chr11 34327728 34328955 -116454598 - L1 LINE L1 -2417 3729 2512 804 208 11 0 chr11 34328953 34329131 -116454422 + L1PB1 LINE L1 5090 5269 -877 * 5397 92 39 0 chr11 34329133 34329903 -116453650 + L1PB1 LINE L1 5352 6151 0 767 323 43 21 chr11 34329911 34330286 -116453267 + MER110-int LTR ERV1 3078 3460 -3341 2011 107 52 60 chr11 34330295 34330697 -116452856 + L1MA7 LINE L1 5892 6290 -1 478 314 21 37 chr11 34331219 34331410 -116452143 + MER110-int LTR ERV1 3531 3718 -3083 1651 295 92 36 chr11 34331559 34332342 -116451211 + MER110-int LTR ERV1 1591 2417 -2230 1362 202 32 9 chr11 34332890 34333187 -116450366 + MER58B DNA MER1_type 37 340 -1 384 226 20 98 chr11 34333187 34333391 -116450162 + MER110-int LTR ERV1 3024 3211 -1436 781 278 19 10 chr11 34333411 34333616 -116449937 + MER110-int LTR ERV1 4362 4568 -79 249 33 0 0 chr11 34333624 34333654 -116449899 + (CA)n Simple_repeat Simple_repeat 2 31 0 787 229 73 128 chr11 34333844 34334291 -116449262 + MER110 LTR ERV1 80 483 -8 380 288 104 7 chr11 34334370 34334658 -116448895 - L1M4 LINE L1 -1198 4948 4633 1994 134 3 3 chr11 34334695 34334987 -116448566 - AluJo SINE Alu -12 300 9 2183 122 38 24 chr11 34335833 34336203 -116447350 - THE1C LTR MaLR 0 375 1 594 292 153 19 chr11 34336327 34336752 -116446801 + L1MCc LINE L1 -293 188 -5938 410 289 44 29 chr11 34337025 34337256 -116446297 + L1MCc LINE L1 652 865 -5260 1808 208 60 25 chr11 34337388 34337873 -116445680 + L1MCc LINE L1 734 1235 -5307 3514 236 50 11 chr11 34337875 34338907 -116444646 + L1M4 LINE L1 3328 4400 -1746 738 218 11 63 chr11 34338904 34339113 -116444440 + L1ME2 LINE L1 5965 6165 -1 * 2167 124 0 20 chr11 34339151 34339457 -116444096 - AluSx SINE Alu -12 300 1 2449 67 0 13 chr11 34339729 34340029 -116443524 - AluY SINE Alu -15 296 1 1094 257 108 43 chr11 34340122 34340539 -116443014 - MLT1L LTR MaLR 0 615 172 903 301 21 0 chr11 34340905 34341141 -116442412 - MIR SINE MIR -19 243 3 26 0 0 0 chr11 34341964 34341990 -116441563 + AT_rich Low_complexity Low_complexity 1 26 0 21 71 0 0 chr11 34342051 34342093 -116441460 + AT_rich Low_complexity Low_complexity 1 42 0 510 348 41 12 chr11 34342686 34342930 -116440623 + MER102a DNA MER1_type 59 309 -21 1756 162 33 24 chr11 34343271 34343605 -116439948 + MER44D DNA MER2_type 2 608 -1 209 206 0 103 chr11 34343808 34343876 -116439677 + MIR3 SINE MIR 148 208 0 951 253 67 42 chr11 34344276 34345095 -116438458 + L1MCc LINE L1 1215 3519 -3125 * 3351 190 183 129 chr11 34345093 34345463 -116438090 - L1MD3 LINE L1 -231 7764 7415 326 227 62 94 chr11 34345463 34345591 -116437962 - MLT1L LTR MaLR -443 124 1 3351 190 183 129 chr11 34345591 34345705 -116437848 - L1MD3 LINE L1 -580 7415 7309 2224 98 0 0 chr11 34345705 34346002 -116437551 - AluSg1 SINE Alu -12 297 1 3351 190 183 129 chr11 34346002 34346102 -116437451 - L1MD3 LINE L1 -686 7309 7216 1782 181 3 0 chr11 34346102 34346390 -116437163 + AluJo SINE Alu 1 289 -23 3351 190 183 129 chr11 34346390 34346823 -116436730 - L1MD3 LINE L1 -779 7216 6808 2206 103 0 0 chr11 34346823 34347137 -116436416 - AluSx SINE Alu 0 314 1 5089 93 19 8 chr11 34347144 34347872 -116435681 - L1PA11 LINE L1 0 6174 5439 3351 190 183 129 chr11 34347872 34348531 -116435022 - L1MD3 LINE L1 -1192 6803 5852 467 233 124 63 chr11 34348534 34348882 -116434671 - L1M4c LINE L1 -4617 1765 1368 40860 66 4 5 chr11 34348920 34352558 -116430995 + L1PA5 LINE L1 1 3635 -2519 2073 22 0 0 chr11 34352558 34352787 -116430766 - SVA Other Other -2 1384 1156 40860 66 4 5 chr11 34352787 34355072 -116428481 + L1PA5 LINE L1 3635 5920 -234 447 106 0 0 chr11 34355072 34355138 -116428415 + (TA)n Simple_repeat Simple_repeat 2 67 0 311 228 29 25 chr11 34355146 34355258 -116428295 - AluSp SINE Alu -111 192 96 15879 151 22 16 chr11 34355334 34355364 -116428189 - L1MA3 LINE L1 0 7724 7696 387 0 0 0 chr11 34355364 34355407 -116428146 + (TG)n Simple_repeat Simple_repeat 2 44 0 15879 151 22 16 chr11 34355407 34355466 -116428087 - L1MA3 LINE L1 -28 7696 7639 2020 126 10 17 chr11 34355466 34355767 -116427786 + AluSx SINE Alu 1 299 -13 15879 151 22 16 chr11 34355767 34359787 -116423766 - L1MA3 LINE L1 -85 7639 3594 6701 73 2 0 chr11 34359802 34361427 -116422126 - L1PA7 LINE L1 -11 6143 4514 1526 73 24 69 chr11 34361427 34361674 -116421879 + L1P LINE L1 2763 2998 -3148 18905 94 15 23 chr11 34361681 34366211 -116417342 - L1PA7 LINE L1 -1635 4511 11 22095 118 51 16 chr11 34366218 34367997 -116415556 - L1MA3 LINE L1 -3955 3610 1894 2376 85 0 3 chr11 34367997 34368302 -116415251 - AluSg SINE Alu -6 304 1 22095 118 51 16 chr11 34368302 34369990 -116413563 - L1MA3 LINE L1 -5671 1894 22 262 264 169 20 chr11 34369993 34370141 -116413412 - MLT1F LTR MaLR -33 509 340 230 203 186 0 chr11 34370287 34370346 -116413207 - MLT1I LTR MaLR -241 168 99 292 267 34 48 chr11 34370692 34370838 -116412715 - L1ME LINE L1 -622 5499 5356 1539 173 17 50 chr11 34370943 34371244 -116412309 - AluJo SINE Alu -21 291 1 1769 159 9 55 chr11 34371418 34371596 -116411957 - AluJb SINE Alu 0 312 154 2248 117 0 3 chr11 34371596 34371896 -116411657 - AluSx SINE Alu -11 301 3 1769 159 9 55 chr11 34371896 34372044 -116411509 - AluJb SINE Alu -158 154 1 342 209 79 79 chr11 34372225 34372364 -116411189 - L1ME LINE L1 -1436 4710 4572 550 250 85 26 chr11 34372377 34372649 -116410904 + L1MEd LINE L1 914 1201 -4918 448 313 216 3 chr11 34372650 34372941 -116410612 + L1MEd LINE L1 1216 1568 -4561 2395 102 0 0 chr11 34373011 34373316 -116410237 - AluSg SINE Alu -3 307 3 2286 84 0 0 chr11 34373386 34373670 -116409883 + AluSg SINE Alu 1 284 -26 328 240 0 62 chr11 34373675 34373771 -116409782 + L1MC4 LINE L1 6614 6703 -1339 301 260 0 62 chr11 34373767 34373863 -116409690 - L1MC4 LINE L1 -1339 6703 6614 * 302 273 23 23 chr11 34373869 34373957 -116409596 - L1MC4 LINE L1 -1341 6701 6614 334 272 0 22 chr11 34373977 34374069 -116409484 - L1MC4 LINE L1 -1339 6703 6614 332 255 0 43 chr11 34374105 34374199 -116409354 - L1MC4 LINE L1 -1339 6703 6614 332 255 0 43 chr11 34374209 34374303 -116409250 - L1MC4 LINE L1 -1339 6703 6614 332 255 0 43 chr11 34374313 34374407 -116409146 - L1MC4 LINE L1 -1339 6703 6614 332 255 0 43 chr11 34374417 34374511 -116409042 - L1MC4 LINE L1 -1339 6703 6614 345 261 0 22 chr11 34374519 34374611 -116408942 - L1MC4 LINE L1 -1339 6703 6614 980 244 21 42 chr11 34375084 34375416 -116408137 + L1ME2 LINE L1 5665 5989 -175 24 67 0 0 chr11 34375445 34375490 -116408063 + AT_rich Low_complexity Low_complexity 1 45 0 2299 162 71 53 chr11 34375614 34376107 -116407446 - MLT1D LTR MaLR -3 502 1 21 36 0 0 chr11 34377136 34377164 -116406389 + AT_rich Low_complexity Low_complexity 1 28 0 1908 121 0 4 chr11 34377452 34377716 -116405837 - AluSx SINE Alu -1 311 49 3439 230 46 22 chr11 34378901 34379778 -116403775 - L1MD2 LINE L1 -10 6349 5452 2410 150 0 0 chr11 34379909 34380270 -116403283 - MLT2D LTR ERVL -46 368 8 22978 80 7 6 chr11 34380761 34383879 -116399674 + L1PA5 LINE L1 2 3121 -3025 15996 38 0 0 chr11 34383888 34386617 -116396936 + L1PA5 LINE L1 3438 6154 0 22 35 0 0 chr11 34386677 34386706 -116396847 + AT_rich Low_complexity Low_complexity 1 29 0 280 353 10 0 chr11 34386726 34386828 -116396725 + L1MEd LINE L1 534 636 -5483 995 197 0 0 chr11 34386828 34387006 -116396547 + FRAM SINE Alu 1 175 -1 812 262 58 4 chr11 34387009 34387284 -116396269 + L1ME LINE L1 5298 5587 -575 1697 248 68 37 chr11 34387311 34387824 -116395729 - MLT1H LTR MaLR -18 531 3 198 376 60 7 chr11 34387826 34387975 -116395578 + L2 LINE L2 2923 3079 -193 910 242 118 48 chr11 34388121 34388593 -116394960 - MLT1H LTR MaLR -8 547 21 242 361 21 7 chr11 34388805 34388949 -116394604 + MLT1-int LTR MaLR 399 544 -827 289 270 27 0 chr11 34389268 34389342 -116394211 + MLT1-int LTR MaLR 804 879 -492 347 235 25 0 chr11 34390227 34390308 -116393245 + MLT1H1 LTR MaLR 463 545 -10 333 221 126 16 chr11 34390335 34390462 -116393091 - HAL1 LINE L1 -1556 951 811 692 256 101 48 chr11 34390462 34390899 -116392654 + L1MC4 LINE L1 7566 8025 -17 3499 144 60 26 chr11 34390912 34391594 -116391959 + L1MB8 LINE L1 5468 6172 -6 1586 174 28 28 chr11 34391638 34391925 -116391628 + AluJo SINE Alu 9 295 -17 411 293 50 92 chr11 34391925 34392325 -116391228 - HAL1 LINE L1 -1703 804 422 238 288 215 18 chr11 34392445 34392608 -116390945 - HAL1 LINE L1 -2311 196 2 25 0 0 0 chr11 34392785 34392810 -116390743 + AT_rich Low_complexity Low_complexity 1 25 0 194 349 17 114 chr11 34392962 34393137 -116390416 - L2 LINE L2 -108 3164 3007 21 57 0 0 chr11 34393161 34393196 -116390357 + AT_rich Low_complexity Low_complexity 1 35 0 338 247 13 13 chr11 34393300 34393377 -116390176 + L2 LINE L2 3222 3298 -15 812 294 92 46 chr11 34393386 34393777 -116389776 + L2 LINE L2 2905 3313 0 218 329 0 0 chr11 34394159 34394241 -116389312 + CT-rich Low_complexity Low_complexity 1 82 0 183 80 0 0 chr11 34394932 34394957 -116388596 + (TA)n Simple_repeat Simple_repeat 2 26 0 594 103 0 0 chr11 34395069 34395156 -116388397 + (TA)n Simple_repeat Simple_repeat 1 87 0 2227 113 3 22 chr11 34395219 34395537 -116388016 - AluSx SINE Alu 0 312 1 26 64 0 0 chr11 34395792 34395839 -116387714 + AT_rich Low_complexity Low_complexity 1 47 0 779 199 21 7 chr11 34396268 34396409 -116387144 + MER5A DNA MER1_type 2 144 -45 2086 105 46 0 chr11 34396662 34396947 -116386606 + AluSq SINE Alu 1 298 -15 725 300 113 51 chr11 34397469 34398002 -116385551 - MLT1K LTR MaLR -22 566 1 1998 149 0 0 chr11 34398124 34398412 -116385141 + AluSx SINE Alu 1 288 -24 30 27 0 0 chr11 34398412 34398449 -116385104 + AT_rich Low_complexity Low_complexity 1 37 0 496 266 83 41 chr11 34398516 34398806 -116384747 + L1ME LINE L1 5513 5814 -307 854 231 91 12 chr11 34398808 34399050 -116384503 - MIR SINE MIR 0 262 2 1376 174 0 5 chr11 34399053 34399277 -116384276 + AluJb SINE Alu 70 292 -20 4889 254 114 50 chr11 34399359 34399971 -116383582 + HAL1 LINE L1 3 575 -1932 3620 114 6 21 chr11 34399971 34400506 -116383047 + MER1A DNA MER1_type 1 527 0 4889 254 114 50 chr11 34400506 34401567 -116381986 + HAL1 LINE L1 575 1567 -940 1846 114 81 92 chr11 34401567 34401936 -116381617 - MLT1A1 LTR MaLR 0 365 1 4889 254 114 50 chr11 34401936 34402180 -116381373 + HAL1 LINE L1 1567 1794 -713 2218 97 7 3 chr11 34402180 34402478 -116381075 + AluSp SINE Alu 1 299 -14 4889 254 114 50 chr11 34402478 34402830 -116380723 + HAL1 LINE L1 1794 2418 -89 2134 104 31 0 chr11 34403024 34403313 -116380240 + AluSq SINE Alu 1 298 -15 324 211 0 101 chr11 34403367 34403476 -116380077 - MER112 DNA MER1_type -151 109 12 1975 147 6 13 chr11 34403522 34403835 -116379718 - AluJb SINE Alu 0 312 2 377 216 180 36 chr11 34403946 34404085 -116379468 + MIR SINE MIR 49 207 -55 237 120 84 0 chr11 34404485 34404627 -116378926 + (TA)n Simple_repeat Simple_repeat 1 154 0 35 24 0 0 chr11 34404636 34404678 -116378875 + AT_rich Low_complexity Low_complexity 1 42 0 2015 128 31 0 chr11 34406609 34406898 -116376655 - AluJo SINE Alu -14 298 1 518 379 70 28 chr11 34407542 34407621 -116375932 - L2 LINE L2 0 3272 3198 1856 162 0 7 chr11 34407621 34407918 -116375635 + AluJo SINE Alu 1 295 -17 518 379 70 28 chr11 34407918 34408268 -116375285 - L2 LINE L2 -74 3198 2825 26 30 0 0 chr11 34408818 34408851 -116374702 + AT_rich Low_complexity Low_complexity 1 33 0 290 227 250 8 chr11 34409505 34409637 -116373916 - MER103 DNA DNA -1 165 2 1654 157 3 43 chr11 34409803 34410108 -116373445 + AluJb SINE Alu 1 293 -19 375 23 0 0 chr11 34410109 34410153 -116373400 + (CA)n Simple_repeat Simple_repeat 1 44 0 442 263 0 66 chr11 34410335 34410487 -116373066 - MER112 DNA MER1_type -17 243 102 300 179 12 95 chr11 34410540 34410624 -116372929 + MER103 DNA DNA 11 87 -79 384 262 99 81 chr11 34410875 34411109 -116372444 + MIR SINE MIR 25 262 0 207 0 0 0 chr11 34411736 34411759 -116371794 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 2342 57 4 0 chr11 34411762 34412042 -116371511 - AluSx SINE Alu -31 281 1 1031 62 0 0 chr11 34412994 34413124 -116370429 - AluY SINE Alu -9 302 173 339 209 187 33 chr11 34413126 34413308 -116370245 + L1MC4a LINE L1 5961 6170 -1638 1871 147 7 7 chr11 34413323 34413622 -116369931 + AluJb SINE Alu 5 303 -9 2495 70 0 0 chr11 34413823 34414122 -116369431 - AluSq SINE Alu -14 299 1 587 269 186 25 chr11 34414181 34414456 -116369097 + L2 LINE L2 2995 3313 0 515 240 103 14 chr11 34414506 34414652 -116368901 - MIR SINE MIR 0 262 104 597 186 86 14 chr11 34414714 34414854 -116368699 + MLT1A1 LTR MaLR 1 150 -215 2081 130 7 7 chr11 34414860 34415167 -116368386 + AluSx SINE Alu 1 307 -5 1123 150 0 0 chr11 34415297 34415457 -116368096 + FRAM SINE Alu 1 159 -17 572 233 20 33 chr11 34415843 34415993 -116367560 + MIR SINE MIR 7 154 -108 1805 158 60 0 chr11 34415998 34416334 -116367219 + MER46B DNA MER2_type 6 236 0 234 297 99 20 chr11 34416334 34416435 -116367118 + MIR SINE MIR 153 261 -1 1601 144 14 51 chr11 34416442 34416734 -116366819 - AluJb SINE Alu -27 285 5 182 105 26 0 chr11 34417009 34417047 -116366506 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1330 153 5 31 chr11 34417059 34417210 -116366343 - AluJb SINE Alu -28 284 139 2391 112 0 6 chr11 34417210 34417524 -116366029 - AluSx SINE Alu 0 312 1 1330 153 5 31 chr11 34417524 34417594 -116365959 - AluJb SINE Alu -173 139 69 349 280 108 0 chr11 34418056 34418149 -116365404 + L2 LINE L2 3170 3272 0 203 0 0 36 chr11 34418404 34418432 -116365121 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 458 194 0 0 chr11 34418483 34418555 -116364998 + FRAM SINE Alu 74 145 -31 294 355 18 35 chr11 34418687 34418856 -116364697 + L2 LINE L2 2333 2498 -816 201 382 0 10 chr11 34418873 34418975 -116364578 - L2 LINE L2 -818 2496 2396 969 253 128 52 chr11 34419011 34419493 -116364060 - MLT1L LTR MaLR -10 605 73 2333 94 0 0 chr11 34419493 34419790 -116363763 + AluSg SINE Alu 1 297 -13 969 253 128 52 chr11 34419790 34419869 -116363684 - MLT1L LTR MaLR -542 73 1 696 254 53 14 chr11 34419869 34420078 -116363475 - L2 LINE L2 -946 2368 2152 284 328 102 0 chr11 34420078 34420206 -116363347 + MIR SINE MIR 118 258 -4 212 192 77 19 chr11 34420754 34420806 -116362747 + MER5A DNA MER1_type 134 188 -1 1873 126 0 73 chr11 34420896 34421198 -116362355 - AluSx SINE Alu -23 289 10 2167 124 10 0 chr11 34421216 34421523 -116362030 - AluSx SINE Alu -2 310 1 1962 140 3 11 chr11 34421933 34422242 -116361311 - AluSx SINE Alu 0 307 1 1762 154 29 0 chr11 34422281 34422554 -116360999 - AluSx SINE Alu -22 290 10 2011 122 6 38 chr11 34424473 34424793 -116358760 + AluJb SINE Alu 3 312 0 193 278 0 19 chr11 34424934 34424988 -116358565 - MER5B DNA MER1_type -82 96 44 3283 80 2 0 chr11 34425022 34425458 -116358095 - LTR3b LTR ERVK 0 437 1 559 164 14 164 chr11 34425550 34425616 -116357937 - MER58A DNA MER1_type -2198 222 148 1573 110 18 13 chr11 34425616 34425844 -116357709 - MER30 DNA MER1_type -1 229 1 559 164 14 164 chr11 34425844 34425990 -116357563 - MER58A DNA MER1_type -2272 148 42 378 266 80 83 chr11 34426053 34426414 -116357139 + HAL1 LINE L1 930 1289 -1218 2340 101 0 0 chr11 34426489 34426786 -116356767 + AluSx SINE Alu 1 297 -15 261 152 215 38 chr11 34426786 34426865 -116356688 + L1MC5 LINE L1 7823 7915 -46 419 240 220 30 chr11 34426909 34427109 -116356444 - L1ME4a LINE L1 -4 6117 5880 401 151 23 12 chr11 34427352 34427438 -116356115 - LTR67 LTR ERVL -13 544 458 208 304 96 35 chr11 34427876 34427991 -116355562 + MIR SINE MIR 81 202 -60 418 282 153 31 chr11 34428505 34428668 -116354885 - MIR3 SINE MIR -14 194 12 1287 112 0 43 chr11 34428981 34429168 -116354385 + AluSx SINE Alu 1 179 -133 323 241 27 89 chr11 34429518 34429616 -116353937 - L1ME4a LINE L1 -289 5881 5778 2238 156 46 10 chr11 34429616 34430027 -116353526 - MSTB LTR MaLR 0 426 1 323 241 27 89 chr11 34430027 34430152 -116353401 - L1ME4a LINE L1 -392 5778 5672 334 359 19 6 chr11 34430170 34430329 -116353224 - L1ME4a LINE L1 -533 5631 5471 23 0 0 0 chr11 34430346 34430369 -116353184 + AT_rich Low_complexity Low_complexity 1 23 0 1779 139 29 45 chr11 34430378 34430516 -116353037 + AluJb SINE Alu 1 140 -172 2430 82 0 10 chr11 34430516 34430821 -116352732 + AluSp SINE Alu 1 302 -11 1779 139 29 45 chr11 34430821 34430991 -116352562 + AluJb SINE Alu 140 304 -8 478 153 71 0 chr11 34430992 34431090 -116352463 + Charlie4 DNA MER1_type 85 189 -1772 295 218 223 6 chr11 34431112 34431447 -116352106 - L1ME4a LINE L1 -748 5398 5012 1326 182 5 9 chr11 34431464 34431684 -116351869 - AluJo SINE Alu -87 225 7 692 252 115 46 chr11 34431697 34432264 -116351289 - L1ME4a LINE L1 -1137 5009 4404 3555 167 17 16 chr11 34432624 34433332 -116350221 + L1MB7 LINE L1 5456 6164 -20 1050 183 0 6 chr11 34433464 34433639 -116349914 - FRAM SINE Alu -9 167 1 215 324 14 0 chr11 34433977 34434051 -116349502 + L2 LINE L2 2897 2971 -301 * 909 305 78 22 chr11 34434037 34434437 -116349116 - L2 LINE L2 -718 2596 2175 2375 109 0 3 chr11 34434904 34435217 -116348336 - AluSq SINE Alu -1 312 1 537 295 65 5 chr11 34435377 34435577 -116347976 - L1ME LINE L1 -406 5715 5504 559 280 59 0 chr11 34435984 34436170 -116347383 - MER117 DNA MER1_type 0 197 1 936 256 26 0 chr11 34436393 34436627 -116346926 + MIR SINE MIR 13 252 -10 3238 137 12 30 chr11 34436632 34437237 -116346316 + L1MB7 LINE L1 5587 6180 -4 2011 142 7 0 chr11 34437600 34437882 -116345671 - AluJb SINE Alu -17 295 12 21 36 0 0 chr11 34438136 34438164 -116345389 + AT_rich Low_complexity Low_complexity 1 28 0 1790 141 14 24 chr11 34438294 34438584 -116344969 - AluJo SINE Alu -21 291 5 350 258 141 39 chr11 34438795 34438904 -116344649 - L1ME LINE L1 -545 5576 5480 189 0 0 0 chr11 34438904 34438925 -116344628 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 350 258 141 39 chr11 34438925 34439372 -116344181 - L1ME LINE L1 -641 5480 4966 367 171 0 24 chr11 34440718 34440800 -116342753 + MER116 DNA Mariner 1 80 0 883 182 0 0 chr11 34441118 34441261 -116342292 + FLAM_C SINE Alu 1 143 0 2319 102 0 16 chr11 34441324 34441660 -116341893 + AluSx SINE Alu 1 312 0 753 164 0 0 chr11 34441881 34441997 -116341556 - FRAM SINE Alu -21 155 40 2098 139 0 0 chr11 34442007 34442327 -116341226 - AluSx SINE Alu 0 320 1 21 36 0 0 chr11 34442473 34442501 -116341052 + AT_rich Low_complexity Low_complexity 1 28 0 446 319 35 0 chr11 34442555 34442696 -116340857 - MIR3 SINE MIR -13 195 50 1992 144 0 3 chr11 34442934 34443240 -116340313 + AluJb SINE Alu 1 305 -7 2302 96 3 0 chr11 34443428 34443720 -116339833 - AluSp SINE Alu -6 307 15 192 40 0 0 chr11 34444779 34444804 -116338749 + (A)n Simple_repeat Simple_repeat 1 25 0 23 33 0 0 chr11 34444979 34445009 -116338544 + AT_rich Low_complexity Low_complexity 1 30 0 2173 84 7 14 chr11 34445009 34445296 -116338257 - AluSq SINE Alu -28 285 1 2313 103 0 3 chr11 34446359 34446661 -116336892 + AluSx SINE Alu 1 301 -11 562 221 29 0 chr11 34446829 34446969 -116336584 - Charlie1 DNA MER1_type 0 2761 2618 * 1261 231 20 101 chr11 34446937 34447125 -116336428 - Charlie1 DNA MER1_type -2264 497 296 637 157 74 8 chr11 34447125 34447246 -116336307 + FLAM_A SINE Alu 1 129 -4 1261 231 20 101 chr11 34447246 34447593 -116335960 - Charlie1 DNA MER1_type -2465 296 5 23 0 0 0 chr11 34448606 34448629 -116334924 + AT_rich Low_complexity Low_complexity 1 23 0 316 231 175 42 chr11 34449106 34449249 -116334304 + MIR3 SINE MIR 22 183 -25 1872 91 113 7 chr11 34449876 34450151 -116333402 + AluSg1 SINE Alu 6 309 0 364 320 40 27 chr11 34450280 34450430 -116333123 - L2 LINE L2 0 3272 3121 2367 78 3 10 chr11 34450609 34450915 -116332638 - AluSx SINE Alu -8 304 1 1176 253 162 18 chr11 34451848 34452458 -116331095 - L2 LINE L2 -1 3312 2584 1359 148 15 50 chr11 34452688 34452941 -116330612 - MER33 DNA MER1_type -2277 308 67 1919 148 27 0 chr11 34452941 34453238 -116330315 - AluJb SINE Alu -7 305 1 1359 148 15 50 chr11 34453238 34453315 -116330238 - MER33 DNA MER1_type -2518 67 1 2068 131 0 0 chr11 34453954 34454264 -116329289 + AluSg SINE Alu 1 310 0 363 356 55 14 chr11 34454264 34454410 -116329143 - MIR3 SINE MIR -27 181 30 21 57 0 0 chr11 34454524 34454559 -116328994 + AT_rich Low_complexity Low_complexity 1 35 0 281 259 0 0 chr11 34455400 34455458 -116328095 - L2 LINE L2 -14 3258 3201 306 0 0 0 chr11 34455640 34455674 -116327879 + (ATG)n Simple_repeat Simple_repeat 1 34 0 369 0 0 0 chr11 34455674 34455715 -116327838 + (TTA)n Simple_repeat Simple_repeat 3 43 0 1844 114 40 4 chr11 34455718 34455990 -116327563 - AluSx SINE Alu -30 282 1 1946 142 10 0 chr11 34456311 34456600 -116326953 + AluJb SINE Alu 5 296 -16 51 31 0 0 chr11 34457715 34457780 -116325773 + AT_rich Low_complexity Low_complexity 1 65 0 208 133 26 108 chr11 34457780 34457975 -116325578 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 213 174 14 43 chr11 34457978 34458047 -116325506 + (TAAA)n Simple_repeat Simple_repeat 1 67 0 1398 178 21 4 chr11 34458458 34458739 -116324814 - L1MD3 LINE L1 0 7995 7710 600 196 39 98 chr11 34459476 34459650 -116323903 + L1MC4 LINE L1 7530 7686 -356 1531 171 0 40 chr11 34459650 34459925 -116323628 + AluJb SINE Alu 2 265 -47 600 196 39 98 chr11 34459925 34460005 -116323548 + L1MC4 LINE L1 7686 7769 -273 326 314 58 58 chr11 34460301 34460473 -116323080 + MIR3 SINE MIR 6 177 -31 2227 98 3 0 chr11 34460571 34460857 -116322696 + AluSp SINE Alu 1 287 -26 22 0 0 0 chr11 34460947 34460969 -116322584 + AT_rich Low_complexity Low_complexity 1 22 0 2031 119 32 0 chr11 34460998 34461275 -116322278 - AluSx SINE Alu -26 286 1 314 270 44 13 chr11 34461407 34461566 -116321987 - L1ME4a LINE L1 -4 6117 5954 455 60 134 0 chr11 34461572 34461639 -116321914 - MADE1 DNA Mariner -4 76 1 1260 174 17 49 chr11 34461755 34462043 -116321510 - L1MB2 LINE L1 -12 6159 5881 647 245 0 13 chr11 34462240 34462391 -116321162 + MIR SINE MIR 5 153 -109 250 282 70 14 chr11 34462402 34462473 -116321080 + MER91C DNA MER1_type 33 107 -33 343 287 0 43 chr11 34462484 34462599 -116320954 + MIR SINE MIR 145 254 -8 2262 99 0 0 chr11 34462600 34462933 -116320620 - AluSx SINE Alu 0 333 1 207 0 0 0 chr11 34463230 34463253 -116320300 + (TAAAAA)n Simple_repeat Simple_repeat 2 24 0 2302 64 20 24 chr11 34463476 34463773 -116319780 + AluY SINE Alu 1 296 -15 1693 166 7 14 chr11 34464007 34464322 -116319231 + AluJb SINE Alu 1 313 0 773 158 0 0 chr11 34464322 34464442 -116319111 - AluJo/FLAM SINE Alu -192 120 1 336 342 0 0 chr11 34464612 34464691 -116318862 - L2 LINE L2 -45 3227 3149 2387 90 0 0 chr11 34464850 34465151 -116318402 + AluSc SINE Alu 1 301 -8 476 62 0 0 chr11 34465268 34465333 -116318220 - AluSp/q SINE Alu -9 304 240 3809 151 60 88 chr11 34465404 34465556 -116317997 + L1MB4 LINE L1 5290 5445 -735 260 200 0 0 chr11 34465556 34465596 -116317957 + AluYb8 SINE Alu 135 174 -134 3809 151 60 88 chr11 34465596 34466137 -116317416 + L1MB4 LINE L1 5445 5995 -185 1523 182 12 102 chr11 34466137 34466538 -116317015 - MLT1A1 LTR MaLR 0 365 1 3809 151 60 88 chr11 34466538 34466707 -116316846 + L1MB4 LINE L1 5995 6167 -13 259 130 37 0 chr11 34466715 34466769 -116316784 + (TA)n Simple_repeat Simple_repeat 1 56 0 2220 120 0 0 chr11 34466822 34467121 -116316432 + AluSx SINE Alu 1 299 -13 1739 187 10 0 chr11 34467213 34467512 -116316041 + AluJb SINE Alu 1 302 -10 2458 78 0 3 chr11 34467515 34467823 -116315730 + AluSg SINE Alu 1 307 -3 2111 118 0 10 chr11 34468920 34469229 -116314324 + AluSq SINE Alu 1 306 0 21 36 0 0 chr11 34469445 34469473 -116314080 + AT_rich Low_complexity Low_complexity 1 28 0 488 224 8 15 chr11 34469899 34470033 -116313520 - L1MA4 LINE L1 0 6300 6168 435 242 104 74 chr11 34470727 34470899 -116312654 - MIR SINE MIR -18 244 62 2327 68 3 53 chr11 34470899 34471220 -116312333 - AluY SINE Alu -6 305 1 435 242 104 74 chr11 34471220 34471278 -116312275 - MIR SINE MIR -200 62 7 2028 111 76 0 chr11 34471702 34472066 -116311487 + AluSg SINE Alu 1 386 0 2301 95 3 10 chr11 34472406 34472711 -116310842 + AluSx SINE Alu 1 303 -9 282 257 19 9 chr11 34474183 34474288 -116309265 + (TA)n Simple_repeat Simple_repeat 2 107 0 2003 139 3 7 chr11 34474964 34475258 -116308295 - AluJb SINE Alu -13 299 7 2180 111 3 0 chr11 34475285 34475583 -116307970 - AluSx SINE Alu -13 299 1 21 57 0 0 chr11 34476299 34476334 -116307219 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr11 34476462 34476483 -116307070 + AT_rich Low_complexity Low_complexity 1 21 0 3508 135 15 13 chr11 34476735 34477376 -116306177 + L1MC/D LINE L1 5159 5800 -533 752 163 0 68 chr11 34477392 34477539 -116306014 - FRAM SINE Alu -20 156 20 382 167 0 0 chr11 34477539 34477605 -116305948 - L1MA7 LINE L1 -336 5955 5890 1491 247 77 68 chr11 34477631 34478217 -116305336 - MLT1E LTR MaLR 0 593 3 2224 131 0 0 chr11 34478305 34478611 -116304942 + AluSx SINE Alu 1 306 -6 1028 264 60 46 chr11 34478882 34479133 -116304420 - HAL1 LINE L1 -851 1656 1410 1362 191 103 15 chr11 34479133 34479405 -116304148 + AluJb SINE Alu 3 298 -14 1762 149 3 63 chr11 34479406 34479722 -116303831 + AluJb SINE Alu 1 297 -15 1028 264 60 46 chr11 34479722 34479949 -116303604 - HAL1 LINE L1 -1096 1411 1169 1178 210 52 38 chr11 34479957 34480300 -116303253 - MER87 LTR ERV1 0 541 194 378 224 48 54 chr11 34480573 34480720 -116302833 - MER87-int LTR ERV1 -617 7503 7358 1012 130 0 0 chr11 34480998 34481136 -116302417 - MER49 LTR ERV1 -171 752 615 * 1420 141 83 40 chr11 34481120 34481396 -116302157 - MER49 LTR ERV1 -633 290 3 1788 147 14 5 chr11 34481406 34481703 -116301850 - MER49-int LTR ERV1 -9 7093 6447 1133 185 11 63 chr11 34481783 34481866 -116301687 - MER87-int LTR ERV1 -2237 4026 3940 1855 156 7 16 chr11 34481866 34482173 -116301380 - AluJb SINE Alu -8 304 1 1133 185 11 63 chr11 34482173 34482240 -116301313 - MER87-int LTR ERV1 -2323 3940 3871 2185 120 20 0 chr11 34482240 34482541 -116301012 - AluSx SINE Alu -5 307 1 1133 185 11 63 chr11 34482541 34482730 -116300823 - MER87-int LTR ERV1 -2392 3871 2469 1855 186 66 73 chr11 34482768 34483111 -116300442 - MER87-int LTR ERV1 -2862 3736 3392 2398 87 0 3 chr11 34483111 34483410 -116300143 + AluSq SINE Alu 1 298 -15 1855 186 66 73 chr11 34483410 34483725 -116299828 - MER87-int LTR ERV1 -3206 3392 3081 1755 60 0 5 chr11 34483725 34483941 -116299612 - AluY SINE Alu -17 294 80 2161 113 0 7 chr11 34483960 34484251 -116299302 + AluSx SINE Alu 11 299 -13 11506 169 21 23 chr11 34484251 34486268 -116297285 + L1PA14 LINE L1 3294 5303 -858 2426 101 0 0 chr11 34486268 34486574 -116296979 + AluSg SINE Alu 1 306 -4 11506 169 21 23 chr11 34486574 34487420 -116296133 + L1PA14 LINE L1 5303 6149 -12 227 30 0 30 chr11 34487431 34487464 -116296089 + (TAAAA)n Simple_repeat Simple_repeat 2 33 0 2345 97 0 0 chr11 34487587 34487887 -116295666 - AluSq SINE Alu -13 300 1 27 0 0 26 chr11 34487895 34487915 -116295638 + AT_rich Low_complexity Low_complexity 1 21 -16 2365 103 0 0 chr11 34487915 34488217 -116295336 + AluSg SINE Alu 1 302 -8 27 0 0 26 chr11 34488217 34488234 -116295319 + AT_rich Low_complexity Low_complexity 21 37 0 2422 84 0 0 chr11 34488234 34488551 -116295002 + AluSx SINE Alu 1 317 0 1679 248 34 19 chr11 34488648 34489064 -116294489 - MER87-int LTR ERV1 -1364 422 1 371 263 51 29 chr11 34489065 34489202 -116294351 - MER87 LTR ERV1 0 541 402 2045 109 3 33 chr11 34489224 34489526 -116294027 - AluSx SINE Alu -19 293 1 1832 243 100 53 chr11 34489527 34490001 -116293552 - L1M4 LINE L1 -1081 5065 4615 2097 132 0 0 chr11 34490001 34490310 -116293243 - AluSx SINE Alu 0 309 1 1832 243 100 53 chr11 34490310 34490487 -116293066 - L1M4 LINE L1 -1531 4615 4448 2538 183 34 28 chr11 34490487 34490956 -116292597 + L1MB7 LINE L1 5628 6102 -82 2174 109 0 7 chr11 34490956 34491249 -116292304 + AluSg SINE Alu 1 291 -19 2538 183 34 28 chr11 34491249 34491314 -116292239 + L1MB7 LINE L1 6102 6165 -19 1832 243 100 53 chr11 34491314 34491420 -116292133 - L1M4 LINE L1 -1698 4448 4270 1545 213 167 0 chr11 34491420 34491749 -116291804 + MSTD LTR MaLR 1 384 -12 3759 223 88 47 chr11 34491762 34492860 -116290693 + MSTD-int LTR MaLR 2 1144 -591 990 167 63 45 chr11 34492857 34493002 -116290551 + MSTD-int LTR MaLR 1510 1662 -73 * 2634 50 0 3 chr11 34493002 34493305 -116290248 + AluY SINE Alu 1 302 -9 990 167 63 45 chr11 34493305 34493381 -116290172 + MSTD-int LTR MaLR 1662 1735 0 2051 188 10 42 chr11 34493381 34493790 -116289763 + MSTD LTR MaLR 1 396 0 530 226 16 0 chr11 34493828 34493952 -116289601 - L1M4 LINE L1 -1924 4222 4097 346 189 162 18 chr11 34493949 34494060 -116289493 + L1MC4 LINE L1 7914 8040 -2 * 984 211 54 5 chr11 34494085 34494308 -116289245 - MIR SINE MIR -28 234 1 1695 168 3 44 chr11 34494695 34495016 -116288537 - AluJb SINE Alu 0 309 1 2448 89 3 0 chr11 34495082 34495385 -116288168 - AluSg SINE Alu -6 304 1 553 251 80 84 chr11 34495453 34495556 -116287997 + L1ME LINE L1 5513 5615 -506 624 197 8 0 chr11 34495556 34495678 -116287875 + FLAM_C SINE Alu 3 125 -8 553 251 80 84 chr11 34495678 34495861 -116287692 + L1ME LINE L1 5615 5798 -323 1475 83 0 0 chr11 34495968 34496148 -116287405 - AluSp SINE Alu 0 313 134 2009 73 94 14 chr11 34496148 34496423 -116287130 - AluSx SINE Alu -15 297 1 1950 157 3 0 chr11 34496668 34496968 -116286585 + AluJo SINE Alu 3 303 -9 496 299 83 69 chr11 34497226 34497514 -116286039 - LTR16C LTR ERVL -13 478 187 932 219 136 12 chr11 34497591 34497842 -116285711 + AluJo SINE Alu 1 282 -30 195 129 0 0 chr11 34497843 34497874 -116285679 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 2224 114 10 3 chr11 34497876 34498182 -116285371 - AluSx SINE Alu 0 312 5 2247 120 0 7 chr11 34498196 34498505 -116285048 - AluSx SINE Alu -3 309 3 2277 96 3 3 chr11 34498535 34498827 -116284726 + AluSc SINE Alu 1 292 -17 207 0 0 0 chr11 34498837 34498860 -116284693 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1586 155 64 34 chr11 34498860 34499156 -116284397 + AluJo SINE Alu 1 305 -7 1730 168 3 22 chr11 34499156 34499472 -116284081 + AluJo SINE Alu 1 310 -2 1877 112 176 32 chr11 34500060 34500129 -116283424 - MSTA LTR MaLR 0 428 370 2390 92 0 0 chr11 34500129 34500421 -116283132 + AluSg SINE Alu 1 292 -18 1877 112 176 32 chr11 34500421 34500725 -116282828 - MSTA LTR MaLR -58 370 1 1597 109 9 0 chr11 34500754 34500965 -116282588 + AluSg/x SINE Alu 84 296 -14 278 49 0 24 chr11 34501318 34501359 -116282194 + (TG)n Simple_repeat Simple_repeat 2 41 0 364 138 0 0 chr11 34501549 34501607 -116281946 + L1MC4 LINE L1 6974 7031 -1011 2744 209 97 4 chr11 34501611 34502156 -116281397 - MER77 LTR ERV1 -3 602 7 264 170 0 0 chr11 34502157 34502210 -116281343 + L1MC4 LINE L1 7027 7079 -963 2627 129 12 15 chr11 34502214 34502436 -116281117 + MER57A LTR ERV1 1 223 -180 2083 142 134 8 chr11 34502436 34502816 -116280737 - MSTA LTR MaLR 0 428 1 2627 129 12 15 chr11 34502816 34502997 -116280556 + MER57A LTR ERV1 223 403 0 303 195 61 24 chr11 34502997 34503079 -116280474 + L1MC4 LINE L1 7092 7176 -866 730 188 45 8 chr11 34503097 34503230 -116280323 + MLT1C LTR MaLR 327 464 -3 * 3967 145 33 34 chr11 34503229 34503980 -116279573 + LTR1B LTR ERV1 1 772 -13 474 206 41 41 chr11 34504001 34504039 -116279514 + L1MC4a LINE L1 7141 7178 -630 2331 92 3 0 chr11 34504039 34504334 -116279219 - AluSq SINE Alu -17 296 1 474 206 41 41 chr11 34504334 34504441 -116279112 + L1MC4a LINE L1 7177 7286 -522 1715 164 20 0 chr11 34504496 34504795 -116278758 - AluJb SINE Alu -7 305 1 392 280 63 26 chr11 34504802 34504991 -116278562 + MIR SINE MIR 67 262 0 768 200 0 14 chr11 34505467 34505612 -116277941 - FRAM SINE Alu -8 168 26 3080 130 148 96 chr11 34505612 34506857 -116276696 - pTR5 LTR ERV1 -1 1522 6 258 139 51 0 chr11 34506857 34506902 -116276651 - AluSc SINE Alu -135 164 125 184 303 121 10 chr11 34507240 34507339 -116276214 + MIR3 SINE MIR 48 157 -51 353 401 32 6 chr11 34507485 34507642 -116275911 + L2 LINE L2 3112 3272 0 2370 82 0 3 chr11 34507671 34507964 -116275589 + AluY SINE Alu 1 292 -19 671 132 0 9 chr11 34508143 34508249 -116275304 + FLAM_C SINE Alu 29 133 -10 2254 77 10 7 chr11 34508397 34508694 -116274859 + AluSx SINE Alu 5 302 -10 497 60 0 0 chr11 34508876 34508943 -116274610 + L1MA7 LINE L1 6222 6288 -3 213 39 0 0 chr11 34510976 34511002 -116272551 + (CCG)n Simple_repeat Simple_repeat 3 28 0 21 0 0 0 chr11 34511051 34511072 -116272481 + GC_rich Low_complexity Low_complexity 1 21 0 189 180 0 0 chr11 34511142 34511192 -116272361 + C-rich Low_complexity Low_complexity 3 52 0 232 133 33 0 chr11 34511293 34511353 -116272200 + (CCG)n Simple_repeat Simple_repeat 3 64 0 237 139 0 0 chr11 34511407 34511450 -116272103 + (CAG)n Simple_repeat Simple_repeat 1 43 0 1641 116 0 107 chr11 34514479 34514821 -116268732 - AluSp SINE Alu 0 308 1 614 311 5 19 chr11 34515262 34515468 -116268085 - MIR SINE MIR -58 204 2 689 316 131 33 chr11 34515574 34516293 -116267260 + L2 LINE L2 1968 2756 -558 1834 144 0 18 chr11 34516331 34516615 -116266938 + AluJb SINE Alu 1 279 -33 432 0 0 0 chr11 34516615 34516663 -116266890 + (CA)n Simple_repeat Simple_repeat 1 48 0 1596 157 104 7 chr11 34516705 34516985 -116266568 - AluJo SINE Alu 0 312 6 185 184 82 20 chr11 34517605 34517654 -116265899 - L2 LINE L2 -1 3271 3220 1602 280 153 48 chr11 34517861 34518412 -116265141 + L2 LINE L2 2092 2584 -729 2127 130 10 0 chr11 34518412 34518704 -116264849 + AluSx SINE Alu 1 295 -17 1602 280 153 48 chr11 34518704 34519204 -116264349 + L2 LINE L2 2584 3277 -36 760 253 129 5 chr11 34519182 34519384 -116264169 + MIR SINE MIR 7 233 -29 * 204 299 75 0 chr11 34519404 34519471 -116264082 + L2 LINE L2 3241 3312 -1 349 219 31 23 chr11 34519652 34519768 -116263785 - MLT1H LTR MaLR -308 241 97 1918 144 7 3 chr11 34519934 34520233 -116263320 + AluJb SINE Alu 1 300 -12 231 229 0 42 chr11 34520235 34520283 -116263270 - L2 LINE L2 -85 3228 3183 259 215 13 63 chr11 34520315 34520394 -116263159 - L2 LINE L2 -335 2978 2904 981 174 6 0 chr11 34520427 34520594 -116262959 - MER5A DNA MER1_type -21 168 1 270 324 144 0 chr11 34520611 34520750 -116262803 + L2 LINE L2 2990 3148 -165 1017 249 21 4 chr11 34520884 34521121 -116262432 - MIR SINE MIR -14 248 8 343 272 134 38 chr11 34521404 34521665 -116261888 - L2 LINE L2 -27 3286 3001 1923 119 11 21 chr11 34521726 34522044 -116261509 - AluSx SINE Alu 0 315 1 2202 113 3 16 chr11 34522312 34522622 -116260931 - AluSg SINE Alu -4 306 1 180 0 0 0 chr11 34522734 34522754 -116260799 + (T)n Simple_repeat Simple_repeat 1 20 0 537 276 235 22 chr11 34522787 34523145 -116260408 + L2 LINE L2 2880 3313 0 1546 138 40 92 chr11 34524237 34524273 -116259280 - AluJo SINE Alu -2 310 274 2161 103 3 3 chr11 34524273 34524555 -116258998 + AluSq SINE Alu 1 282 -31 1546 138 40 92 chr11 34524555 34524845 -116258708 - AluJo SINE Alu -38 274 1 464 228 46 63 chr11 34524864 34525101 -116258452 - L1MC5 LINE L1 -50 7911 7679 1789 151 10 26 chr11 34525948 34526259 -116257294 + AluJo SINE Alu 1 306 -6 1298 160 89 44 chr11 34526742 34527010 -116256543 - L1M4 LINE L1 -370 5814 5526 2071 141 3 0 chr11 34527010 34527307 -116256246 + AluSx SINE Alu 1 298 -14 1298 160 89 44 chr11 34527307 34527376 -116256177 - L1M4 LINE L1 -658 5526 5462 2223 110 0 7 chr11 34527575 34527874 -116255679 - AluSq SINE Alu -16 297 1 436 272 215 38 chr11 34528063 34528582 -116254971 + L2 LINE L2 2702 3313 0 1196 111 0 32 chr11 34529374 34529563 -116253990 + L1PA8A LINE L1 5949 6131 0 1700 161 60 35 chr11 34529621 34529987 -116253566 + THE1C LTR MaLR 1 375 0 349 323 51 28 chr11 34530158 34530375 -116253178 + L2 LINE L2 2136 2357 -957 208 333 34 51 chr11 34530637 34530754 -116252799 + MER5B DNA MER1_type 63 177 -1 1723 181 0 14 chr11 34530759 34531051 -116252502 + AluJo SINE Alu 1 288 -24 197 359 20 56 chr11 34531232 34531312 -116252241 + L2 LINE L2 2927 3008 -264 2514 73 0 10 chr11 34531312 34531625 -116251928 - AluY SINE Alu -1 310 1 197 359 20 56 chr11 34531625 34531739 -116251814 + L2 LINE L2 3008 3114 -158 497 255 39 97 chr11 34531787 34532046 -116251507 - MIR SINE MIR 0 262 19 1697 157 51 3 chr11 34533046 34533340 -116250213 - AluJo SINE Alu -4 308 1 24 0 0 0 chr11 34533357 34533381 -116250172 + AT_rich Low_complexity Low_complexity 1 24 0 2158 78 60 0 chr11 34534049 34534333 -116249220 - AluSp SINE Alu -12 301 1 2561 162 49 38 chr11 34534347 34534585 -116248968 - L1MB7 LINE L1 -16 6168 5934 1786 171 58 0 chr11 34534585 34534912 -116248641 - MER7A DNA MER2_type -1 345 2 2366 73 0 26 chr11 34534915 34535218 -116248335 - AluSx SINE Alu -17 295 1 2561 162 49 38 chr11 34535218 34535549 -116248004 - L1MB7 LINE L1 -251 5933 5589 2309 109 13 0 chr11 34535675 34535978 -116247575 + AluSx SINE Alu 1 307 -5 222 309 0 29 chr11 34536179 34536247 -116247306 + L2 LINE L2 3193 3258 -14 787 265 115 30 chr11 34536306 34536855 -116246698 - L2 LINE L2 -15 3298 2627 944 145 78 0 chr11 34537021 34537200 -116246353 - L1MC2 LINE L1 -15 6329 6137 745 179 174 30 chr11 34537293 34537494 -116246059 - AluJo SINE Alu -18 294 65 3943 151 49 36 chr11 34537504 34538326 -116245227 - L1MC3 LINE L1 -317 7468 6637 4221 174 45 13 chr11 34538457 34539664 -116243889 + L1MB7 LINE L1 4940 6184 0 2547 204 113 22 chr11 34539659 34540560 -116242993 + L1ME1 LINE L1 4375 5357 -789 * 2023 198 105 54 chr11 34540577 34540613 -116242940 + L1ME1 LINE L1 5434 5467 -699 2316 116 0 0 chr11 34540613 34540916 -116242637 - AluSx SINE Alu -9 303 1 2023 198 105 54 chr11 34540916 34541523 -116242030 + L1ME1 LINE L1 5467 6042 -124 2241 98 0 17 chr11 34541523 34541818 -116241735 + AluSx SINE Alu 1 290 -22 2211 83 3 14 chr11 34541818 34542107 -116241446 + AluSc SINE Alu 1 286 -23 2023 198 105 54 chr11 34542107 34542147 -116241406 + L1ME1 LINE L1 6041 6154 -12 979 216 28 85 chr11 34542165 34542411 -116241142 + L1ME LINE L1 4938 5197 -965 1743 173 26 16 chr11 34542411 34542717 -116240836 + AluJb SINE Alu 1 309 -3 979 216 28 85 chr11 34542717 34542867 -116240686 + L1ME LINE L1 5197 5354 -808 3095 140 36 4 chr11 34542867 34543390 -116240163 - L1PA16 LINE L1 -3 6163 5624 979 216 28 85 chr11 34543390 34543622 -116239931 + L1ME LINE L1 5354 5539 -623 2021 140 0 3 chr11 34543624 34543949 -116239604 - AluSx SINE Alu 0 324 1 368 221 53 21 chr11 34543972 34544067 -116239486 + L1MC4a LINE L1 7270 7367 -441 943 142 28 0 chr11 34544068 34544209 -116239344 + FRAM SINE Alu 1 145 -31 226 250 16 0 chr11 34544214 34544278 -116239275 + L1MC4 LINE L1 7508 7572 -470 430 243 133 39 chr11 34544393 34544702 -116238851 + L1MC4 LINE L1 7705 8042 0 234 418 37 11 chr11 34544834 34545023 -116238530 - MIR3 SINE MIR -12 196 3 2210 104 0 3 chr11 34545529 34545828 -116237725 - AluSg SINE Alu -12 298 1 27 0 0 0 chr11 34545851 34545878 -116237675 + AT_rich Low_complexity Low_complexity 1 27 0 21 57 0 0 chr11 34546018 34546053 -116237500 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr11 34547008 34547029 -116236524 + AT_rich Low_complexity Low_complexity 1 21 0 1972 113 0 8 chr11 34547230 34547496 -116236057 - AluSg SINE Alu -9 301 38 386 281 21 0 chr11 34548354 34548450 -116235103 + MIR3 SINE MIR 87 184 -24 289 297 117 9 chr11 34548776 34548998 -116234555 - L1MC/D LINE L1 -2005 5803 5558 1511 164 124 7 chr11 34549421 34549695 -116233858 + AluJo SINE Alu 3 308 -4 3320 32 17 0 chr11 34554165 34554572 -116228981 - L1PA4 LINE L1 -1 6154 5741 440 297 90 7 chr11 34554703 34554848 -116228705 - MIR SINE MIR -86 176 20 188 347 55 40 chr11 34555311 34555393 -116228160 + L2 LINE L2 2553 2632 -682 1968 161 0 16 chr11 34555393 34555709 -116227844 - AluJo SINE Alu -1 311 1 188 347 55 40 chr11 34555709 34555825 -116227728 + L2 LINE L2 2632 2754 -560 213 240 227 87 chr11 34556209 34556359 -116227194 + MIR SINE MIR 15 185 -77 308 253 22 65 chr11 34557590 34557826 -116225727 - L1ME LINE L1 -5426 657 446 247 265 12 24 chr11 34557943 34558026 -116225527 - L1ME LINE L1 -5669 401 320 198 0 0 0 chr11 34558070 34558092 -116225461 + (T)n Simple_repeat Simple_repeat 1 22 0 324 311 68 26 chr11 34558479 34558669 -116224884 - L1 LINE L1 -2343 3803 3606 290 261 124 40 chr11 34558770 34559294 -116224259 - L1 LINE L1 -2703 3443 2876 233 29 0 29 chr11 34559335 34559370 -116224183 + (TTA)n Simple_repeat Simple_repeat 3 36 0 41212 33 21 0 chr11 34559370 34565376 -116218177 - L1PA3 LINE L1 -18 6137 1 334 247 138 35 chr11 34565610 34565784 -116217769 + L1MC5 LINE L1 7734 7925 -36 371 283 190 12 chr11 34565786 34566044 -116217509 - L1 LINE L1 -3531 2615 2312 270 304 33 22 chr11 34566243 34566424 -116217129 + L1M4 LINE L1 2872 3054 -3092 1086 184 0 23 chr11 34566549 34566767 -116216786 + AluJo SINE Alu 87 299 -13 292 230 65 50 chr11 34566886 34567025 -116216528 - L1MC5 LINE L1 -50 7911 7771 728 235 171 24 chr11 34567376 34567797 -116215756 + Charlie2 DNA MER1_type 1988 2470 -392 2218 114 3 0 chr11 34568215 34568513 -116215040 - AluSx SINE Alu -13 299 1 2442 200 133 3 chr11 34568660 34569301 -116214252 - L1MB8 LINE L1 0 6178 5455 4289 220 121 17 chr11 34569308 34569958 -116213595 - L1MB8 LINE L1 -1247 4899 4318 2342 82 0 10 chr11 34569958 34570261 -116213292 - AluSq SINE Alu -13 300 1 4289 220 121 17 chr11 34570261 34570922 -116212631 - L1MB8 LINE L1 -1828 4318 3422 2236 101 14 0 chr11 34570922 34571219 -116212334 - AluSg SINE Alu -9 301 1 4289 220 121 17 chr11 34571219 34571353 -116212200 - L1MB8 LINE L1 -2724 3422 3303 1036 181 11 5 chr11 34571464 34571652 -116211901 - AluJo SINE Alu -4 308 120 182 222 79 48 chr11 34572051 34572114 -116211439 - L3 LINE CR1 -686 891 827 21 57 0 0 chr11 34572609 34572644 -116210909 + AT_rich Low_complexity Low_complexity 1 35 0 765 134 0 25 chr11 34572802 34572921 -116210632 - AluJo SINE Alu -179 133 18 543 298 10 62 chr11 34573155 34573363 -116210190 + L3 LINE CR1 1375 1571 -6 32 67 0 0 chr11 34574574 34574634 -116208919 + AT_rich Low_complexity Low_complexity 1 60 0 1864 157 39 0 chr11 34574902 34575183 -116208370 - AluJb SINE Alu -20 292 1 2464 78 3 0 chr11 34575248 34575554 -116207999 - AluSx SINE Alu 0 312 6 195 239 45 60 chr11 34576442 34576509 -116207044 + MIR3 SINE MIR 122 187 -21 1845 154 21 0 chr11 34576511 34576796 -116206757 - AluJo SINE Alu -17 295 5 22 35 0 0 chr11 34576869 34576898 -116206655 + AT_rich Low_complexity Low_complexity 1 29 0 638 156 39 0 chr11 34577031 34577159 -116206394 - Charlie1a DNA MER1_type -5 1450 1318 906 215 72 5 chr11 34577236 34577445 -116206108 + MER58A DNA MER1_type 1 223 -1 1978 151 3 16 chr11 34577880 34578185 -116205368 - AluJb SINE Alu -11 301 1 654 221 0 0 chr11 34578217 34578339 -116205214 + FLAM_A SINE Alu 3 124 -9 2265 108 0 10 chr11 34578393 34578698 -116204855 + AluSq SINE Alu 1 302 -11 850 193 171 53 chr11 34579016 34579559 -116203994 - Charlie1a DNA MER1_type -2 1453 778 3967 145 42 61 chr11 34579588 34580764 -116202789 - L1MB4 LINE L1 -8 6172 5015 2087 196 29 22 chr11 34580771 34581261 -116202292 - Charlie1a DNA MER1_type -686 769 277 1209 140 82 14 chr11 34581267 34581474 -116202079 - AluJb SINE Alu -5 307 87 2155 96 14 3 chr11 34581477 34581769 -116201784 - AluSg SINE Alu -15 295 1 1589 199 11 14 chr11 34581798 34582085 -116201468 - AluJo SINE Alu -26 286 1 1582 191 18 18 chr11 34582111 34582393 -116201160 - AluJo SINE Alu -30 282 1 771 200 65 88 chr11 34582396 34582656 -116200897 - Charlie1a DNA MER1_type -1174 281 28 815 168 15 0 chr11 34582702 34582833 -116200720 + FLAM_C SINE Alu 1 133 0 261 0 0 0 chr11 34582837 34582866 -116200687 + (TA)n Simple_repeat Simple_repeat 2 30 0 * 441 81 0 0 chr11 34582865 34582927 -116200626 + (CA)n Simple_repeat Simple_repeat 2 63 0 850 152 16 0 chr11 34583023 34583148 -116200405 - FLAM_A SINE Alu -6 127 1 1720 181 0 13 chr11 34583225 34583535 -116200018 - AluJo SINE Alu -3 309 4 2195 96 21 0 chr11 34583788 34584068 -116199485 + AluSq SINE Alu 1 286 -27 486 0 0 0 chr11 34584068 34584122 -116199431 + (CA)n Simple_repeat Simple_repeat 2 55 0 225 226 30 167 chr11 34584122 34584290 -116199263 - MER5B DNA MER1_type -29 149 5 521 124 1 18 chr11 34585018 34585128 -116198425 - L1PB3 LINE L1 -513 5641 5534 3360 95 65 0 chr11 34585128 34585613 -116197940 + L1PB3 LINE L1 5623 6147 -7 575 186 0 0 chr11 34585643 34585740 -116197813 - MER7A DNA MER2_type -250 96 2 416 268 159 13 chr11 34585771 34585944 -116197609 - MIR3 SINE MIR -59 203 7 299 333 170 20 chr11 34585985 34586132 -116197421 - MIR3 SINE MIR -24 184 16 2272 128 0 0 chr11 34587808 34588120 -116195433 - AluSx SINE Alu 0 312 1 320 118 147 29 chr11 34588138 34588206 -116195347 - LTR49 LTR ERV1 -77 567 459 319 200 15 0 chr11 34588408 34588473 -116195080 + Charlie1 DNA MER1_type 1498 1563 -1198 207 320 0 0 chr11 34588481 34588531 -116195022 - MIR SINE MIR -129 79 30 2008 156 0 3 chr11 34588533 34588841 -116194712 - AluSx SINE Alu -5 307 1 1765 100 141 0 chr11 34589082 34589351 -116194202 - AluSx SINE Alu -5 307 1 2505 54 0 0 chr11 34589923 34590219 -116193334 + AluY SINE Alu 6 301 -10 2057 145 0 0 chr11 34590543 34590868 -116192685 - AluSx SINE Alu 0 325 1 266 262 12 46 chr11 34591222 34591330 -116192223 - MLT1H LTR MaLR -402 147 15 451 140 86 9 chr11 34591975 34592092 -116191461 - L1MA8 LINE L1 -23 6268 6152 234 217 0 0 chr11 34592199 34592245 -116191308 + L1ME LINE L1 5543 5588 -533 1831 155 13 30 chr11 34592271 34592574 -116190979 + AluJo SINE Alu 1 298 -14 493 262 40 16 chr11 34592740 34592866 -116190687 - L2 LINE L2 -1 3312 3184 23 33 0 0 chr11 34593197 34593227 -116190326 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr11 34596608 34596629 -116186924 + AT_rich Low_complexity Low_complexity 1 21 0 1760 116 153 0 chr11 34597011 34597312 -116186241 - MER7A DNA MER2_type 0 346 2 24 0 0 0 chr11 34597478 34597502 -116186051 + AT_rich Low_complexity Low_complexity 1 24 0 2159 109 7 0 chr11 34598695 34598978 -116184575 + AluSc SINE Alu 5 289 -20 1662 145 119 0 chr11 34599533 34599802 -116183751 - AluSx SINE Alu -11 301 1 1785 136 11 0 chr11 34600049 34600322 -116183231 - AluJb SINE Alu -36 276 1 1923 170 0 3 chr11 34601026 34601337 -116182216 - AluJo SINE Alu -2 310 1 390 374 59 20 chr11 34601359 34601562 -116181991 + L2 LINE L2 3061 3271 -1 639 111 130 0 chr11 34601872 34601980 -116181573 + FRAM SINE Alu 36 157 -19 268 277 125 49 chr11 34602102 34602286 -116181267 + MIR3 SINE MIR 5 202 -6 2363 97 0 0 chr11 34602726 34603035 -116180518 - AluSc SINE Alu 0 309 1 1677 158 79 4 chr11 34603626 34603904 -116179649 + AluJo SINE Alu 7 305 -7 1272 180 137 49 chr11 34603957 34604232 -116179321 - MLT1A2 LTR MaLR 0 374 124 1940 144 0 0 chr11 34604232 34604517 -116179036 + AluSx SINE Alu 1 285 -27 264 91 0 0 chr11 34604517 34604561 -116178992 + (CATA)n Simple_repeat Simple_repeat 2 45 0 1272 180 137 49 chr11 34604561 34604628 -116178925 - MLT1A2 LTR MaLR -249 125 1 582 291 116 12 chr11 34604873 34605131 -116178422 + L2 LINE L2 2510 2794 -520 478 227 60 7 chr11 34605132 34605282 -116178271 + L1MEc LINE L1 37 194 -6202 435 165 110 0 chr11 34605271 34605380 -116178173 + L1M LINE L1 5281 5401 -890 * 2026 113 40 0 chr11 34605381 34605655 -116177898 + AluSx SINE Alu 1 285 -27 207 0 0 0 chr11 34605655 34605678 -116177875 + (CA)n Simple_repeat Simple_repeat 2 24 0 2098 142 3 3 chr11 34605688 34605999 -116177554 - AluSq SINE Alu 0 313 3 1801 126 8 129 chr11 34606057 34606438 -116177115 + MER1B DNA MER1_type 3 337 0 1884 182 64 25 chr11 34606533 34606973 -116176580 - LTR2B LTR ERV1 0 490 34 3722 181 26 53 chr11 34606990 34607819 -116175734 + L1MB2 LINE L1 4731 5500 -671 720 157 0 79 chr11 34607819 34607959 -116175594 + FLAM_C SINE Alu 5 133 0 3722 181 26 53 chr11 34607959 34608570 -116174983 + L1MB2 LINE L1 5500 6126 -45 964 184 5 53 chr11 34608574 34608833 -116174720 + AluJo SINE Alu 85 333 0 2273 102 17 0 chr11 34609272 34609567 -116173986 - AluSg SINE Alu -10 300 1 966 220 20 52 chr11 34610118 34610410 -116173143 - L1MDa LINE L1 -3867 2777 2511 1567 190 7 37 chr11 34610410 34610705 -116172848 - AluJo SINE Alu -26 286 1 966 220 20 52 chr11 34610705 34610916 -116172637 - L1MDa LINE L1 -4133 2511 2295 673 212 0 0 chr11 34611022 34611140 -116172413 - FLAM_A SINE Alu -15 127 10 3501 209 55 23 chr11 34611153 34611209 -116172344 - L1MDa LINE L1 -4897 1645 1592 1563 179 80 54 chr11 34611209 34611595 -116171958 - MSTD LTR MaLR 0 396 1 3501 209 55 23 chr11 34611595 34611871 -116171682 - L1MDa LINE L1 -4950 1592 1326 2272 111 7 0 chr11 34611871 34612168 -116171385 - AluSx SINE Alu -13 299 1 3501 209 55 23 chr11 34612168 34612828 -116170725 - L1MDa LINE L1 -5216 1326 620 1560 165 22 11 chr11 34612847 34613137 -116170416 - AluJo SINE Alu 0 304 12 17854 164 63 32 chr11 34613146 34616026 -116167527 - L1PA11 LINE L1 0 7612 4822 2297 80 0 27 chr11 34616026 34616325 -116167228 - AluSc SINE Alu -18 291 1 17854 164 63 32 chr11 34616325 34617347 -116166206 - L1PA11 LINE L1 -2790 4822 3833 1989 70 114 7 chr11 34617347 34617619 -116165934 - AluY SINE Alu -10 301 1 17854 164 63 32 chr11 34617619 34617656 -116165897 - L1PA11 LINE L1 -3779 3833 3799 1063 124 0 0 chr11 34617656 34617801 -116165752 - AluSg/x SINE Alu -34 278 134 17854 164 63 32 chr11 34617801 34620314 -116163239 - L1PA11 LINE L1 -3813 3799 4 499 183 10 29 chr11 34620323 34620427 -116163126 - L1MDa LINE L1 -5944 598 497 945 214 62 5 chr11 34620481 34620705 -116162848 - L1M4 LINE L1 -6290 252 16 234 0 0 0 chr11 34620782 34620808 -116162745 + (CA)n Simple_repeat Simple_repeat 2 27 0 27 0 0 0 chr11 34621139 34621166 -116162387 + AT_rich Low_complexity Low_complexity 1 27 0 2213 118 3 0 chr11 34621385 34621690 -116161863 - AluSc SINE Alu -3 306 1 237 269 32 54 chr11 34621837 34621930 -116161623 - MIR SINE MIR -88 120 30 1130 168 92 65 chr11 34621938 34622230 -116161323 - L1MDa LINE L1 -6224 420 121 229 273 0 18 chr11 34622296 34622372 -116161181 + polypyrimidine Low_complexity Low_complexity 1 74 0 574 156 0 0 chr11 34622378 34622468 -116161085 - HY4 scRNA scRNA -3 90 1 352 157 14 14 chr11 34622472 34622542 -116161011 + MER69 DNA AcHobo 2457 2526 0 236 220 0 0 chr11 34622542 34622592 -116160961 + L2 LINE L2 3264 3313 0 182 304 22 0 chr11 34622946 34622992 -116160561 - MER5B DNA MER1_type 0 178 132 868 254 61 96 chr11 34623904 34624381 -116159172 - L2 LINE L2 -1 3312 2853 1101 190 56 0 chr11 34624433 34624649 -116158904 - AluJb SINE Alu -4 308 81 1647 231 97 28 chr11 34624651 34625115 -116158438 - L2 LINE L2 -600 2714 2219 1250 157 10 0 chr11 34625128 34625326 -116158227 - AluJb SINE Alu -28 284 85 701 196 30 0 chr11 34625328 34625461 -116158092 - AluJb SINE Alu -173 139 3 649 250 114 11 chr11 34625463 34625647 -116157906 - L2 LINE L2 -1100 2214 2012 417 167 11 33 chr11 34625694 34625784 -116157769 - AluJ/FRAM SINE Alu -5 307 220 1720 202 7 0 chr11 34625844 34626151 -116157402 - AluSx SINE Alu -3 309 1 1580 172 20 30 chr11 34626186 34626482 -116157071 + AluJo SINE Alu 1 293 -19 351 293 23 30 chr11 34627229 34627362 -116156191 - L2 LINE L2 0 3313 3182 1960 125 57 0 chr11 34627489 34627768 -116155785 + AluSg SINE Alu 1 295 -15 1533 150 73 42 chr11 34627777 34628064 -116155489 + AluJb SINE Alu 1 296 -16 1538 164 47 47 chr11 34628070 34628369 -116155184 + AluJo SINE Alu 1 299 -13 217 243 57 43 chr11 34628414 34628484 -116155069 + MER5A DNA MER1_type 69 139 -50 1125 170 0 65 chr11 34628774 34629003 -116154550 + AluJb SINE Alu 87 300 -12 2253 115 3 6 chr11 34629329 34629641 -116153912 - AluSx SINE Alu -1 311 1 1962 151 0 10 chr11 34630227 34630532 -116153021 - AluJb SINE Alu -2 310 9 2225 108 3 3 chr11 34630731 34631027 -116152526 - AluSp SINE Alu -16 297 2 5790 40 0 1 chr11 34631068 34631763 -116151790 + L1PA5 LINE L1 5455 6148 -6 2025 113 17 7 chr11 34632352 34632645 -116150908 - AluSg SINE Alu -14 296 1 195 184 0 0 chr11 34633242 34633280 -116150273 + (TTA)n Simple_repeat Simple_repeat 3 40 0 351 253 30 84 chr11 34633289 34633455 -116150098 - MIR SINE MIR -18 244 88 2404 75 3 0 chr11 34633470 34633777 -116149776 - AluSx SINE Alu -4 308 1 202 197 30 30 chr11 34634174 34634240 -116149313 + (CGGGG)n Simple_repeat Simple_repeat 4 69 0 863 116 106 40 chr11 34636813 34637012 -116146541 - L1MC3 LINE L1 -120 7665 7454 285 347 10 30 chr11 34637110 34637226 -116146327 - MIR SINE MIR -92 116 9 925 125 190 0 chr11 34637291 34637475 -116146078 - MER20 DNA MER1_type 0 219 1 2124 147 0 0 chr11 34637510 34637803 -116145750 + AluSx SINE Alu 5 297 -15 814 191 13 13 chr11 34638770 34638922 -116144631 - FRAM SINE Alu -12 154 3 2338 90 3 13 chr11 34639089 34639399 -116144154 + AluSg SINE Alu 1 307 -3 343 269 218 6 chr11 34640536 34640692 -116142861 + MIR SINE MIR 72 260 -2 922 52 0 35 chr11 34641101 34641216 -116142337 + AluY SINE Alu 36 146 -165 * 1357 157 17 8 chr11 34641215 34641451 -116142102 + AluJb SINE Alu 69 306 -6 801 200 0 0 chr11 34641452 34641602 -116141951 - MER6B DNA MER2_type -60 150 1 285 184 146 0 chr11 34642924 34643027 -116140526 - L1MC4 LINE L1 0 8042 7925 1856 137 3 24 chr11 34643795 34644087 -116139466 - AluJb SINE Alu -15 297 12 451 304 39 34 chr11 34644483 34644687 -116138866 - MIR SINE MIR -56 206 2 337 178 41 0 chr11 34645105 34645178 -116138375 + L1MB7 LINE L1 6099 6174 -10 296 279 161 25 chr11 34645398 34645559 -116137994 + L2 LINE L2 2866 3048 -224 955 132 147 57 chr11 34645569 34645793 -116137760 - MER33 DNA MER1_type -2266 319 60 2273 108 0 0 chr11 34645793 34646090 -116137463 - AluSg SINE Alu -13 297 1 955 132 147 57 chr11 34646090 34646166 -116137387 - MER33 DNA MER1_type -2525 60 1 374 278 71 0 chr11 34646261 34646387 -116137166 - MIR SINE MIR -10 252 118 180 111 0 0 chr11 34646551 34646578 -116136975 + (TGGA)n Simple_repeat Simple_repeat 4 30 0 23 78 0 0 chr11 34646637 34646688 -116136865 + AT_rich Low_complexity Low_complexity 1 51 0 2242 93 0 3 chr11 34646951 34647280 -116136273 - AluSq SINE Alu 0 328 1 810 154 119 28 chr11 34647300 34647443 -116136110 - FRAM SINE Alu -23 153 1 192 236 112 56 chr11 34647493 34647582 -116135971 + MIR SINE MIR 169 262 0 2368 25 7 4 chr11 34647620 34647938 -116135615 + AluY SINE Alu 1 319 0 660 110 73 0 chr11 34649231 34649340 -116134213 - L1MB7 LINE L1 -16 6168 6052 2277 90 3 0 chr11 34649457 34649747 -116133806 - AluSg SINE Alu -19 291 1 215 329 86 0 chr11 34649849 34649919 -116133634 + L2 LINE L2 3197 3272 0 292 322 34 34 chr11 34649996 34650114 -116133439 + L2 LINE L2 3151 3268 -4 668 228 37 37 chr11 34650493 34650708 -116132845 + L1ME1 LINE L1 5934 6148 -18 261 263 0 0 chr11 34651339 34651396 -116132157 + (CATATA)n Simple_repeat Simple_repeat 4 60 0 991 166 37 0 chr11 34651981 34652144 -116131409 - AluJb SINE Alu -15 297 129 1290 158 5 0 chr11 34652155 34652357 -116131196 + AluY SINE Alu 1 203 -108 333 55 0 18 chr11 34652457 34652512 -116131041 + Alu SINE Alu 245 298 -2 901 110 0 0 chr11 34652519 34652637 -116130916 - AluJb SINE Alu -194 118 1 445 298 43 120 chr11 34652643 34653042 -116130511 - L2 LINE L2 -16 3256 2889 855 284 62 25 chr11 34653056 34653492 -116130061 + L1ME LINE L1 13 464 -5606 977 243 48 65 chr11 34653734 34654303 -116129250 + L1ME LINE L1 529 1087 -4983 26 107 0 0 chr11 34655329 34655432 -116128121 + AT_rich Low_complexity Low_complexity 1 103 0 2143 105 3 7 chr11 34655637 34655922 -116127631 + AluSx SINE Alu 13 296 -16 1520 184 48 24 chr11 34655972 34656265 -116127288 - AluJo SINE Alu -12 300 1 1205 169 75 24 chr11 34656370 34656625 -116126928 + Charlie1b DNA MER1_type 42 309 -214 1859 166 27 3 chr11 34656628 34656923 -116126630 + AluJb SINE Alu 1 302 -10 883 150 0 0 chr11 34657054 34657187 -116126366 - FLAM_C SINE Alu 0 133 1 278 132 8 0 chr11 34657865 34657924 -116125629 + L1PA8A LINE L1 5600 5660 -474 * 335 40 20 0 chr11 34657917 34657967 -116125586 + L1P5 LINE L1 5556 5606 -550 23 33 0 0 chr11 34658227 34658257 -116125296 + AT_rich Low_complexity Low_complexity 1 30 0 1912 159 0 26 chr11 34658266 34658574 -116124979 + AluJo SINE Alu 1 300 -12 701 204 0 0 chr11 34658590 34658722 -116124831 + FLAM_C SINE Alu 6 137 -6 615 174 0 0 chr11 34659129 34659221 -116124332 + AluJb SINE Alu 3 94 -218 1188 156 0 29 chr11 34659264 34659469 -116124084 + AluJb SINE Alu 96 294 -18 505 306 65 90 chr11 34660990 34661313 -116122240 - L2 LINE L2 -31 3241 2927 555 250 85 30 chr11 34661649 34661849 -116121704 + MIR SINE MIR 52 262 0 687 279 67 44 chr11 34662738 34663090 -116120463 + L1MC4a LINE L1 5298 5667 -2141 2140 104 20 3 chr11 34663090 34663387 -116120166 + AluSg SINE Alu 1 302 -8 687 279 67 44 chr11 34663387 34663554 -116119999 + L1MC4a LINE L1 5667 5829 -1979 30 45 0 0 chr11 34663587 34663631 -116119922 + AT_rich Low_complexity Low_complexity 1 44 0 2263 117 0 0 chr11 34664113 34664411 -116119142 + AluSq SINE Alu 1 298 -15 324 252 109 34 chr11 34664469 34664588 -116118965 + MIR SINE MIR 88 215 -47 1909 133 7 0 chr11 34665078 34665390 -116118163 + AluSx SINE Alu 12 325 0 937 177 0 7 chr11 34665506 34665683 -116117870 + FRAM SINE Alu 1 175 0 23 0 0 0 chr11 34665787 34665810 -116117743 + AT_rich Low_complexity Low_complexity 1 23 0 894 121 0 30 chr11 34665911 34666043 -116117510 + FLAM_C SINE Alu 1 128 -5 2322 89 10 0 chr11 34666707 34666998 -116116555 + AluSq SINE Alu 1 294 -19 397 235 96 17 chr11 34667685 34667800 -116115753 - L2 LINE L2 0 3313 3190 674 184 7 52 chr11 34667922 34668058 -116115495 + AluJb SINE Alu 2 131 -181 676 192 56 18 chr11 34669579 34669779 -116113774 - MIR SINE MIR -2 260 2 345 299 104 26 chr11 34672168 34672399 -116111154 + L1ME4a LINE L1 5615 5863 -258 263 281 16 0 chr11 34672810 34672874 -116110679 + L2 LINE L2 3205 3269 -3 1891 164 3 3 chr11 34674762 34675074 -116108479 + AluJo SINE Alu 1 312 0 1183 221 120 35 chr11 34675316 34675799 -116107754 + L1MC/D LINE L1 5296 5819 -1989 249 196 0 0 chr11 34676015 34676071 -116107482 + (TA)n Simple_repeat Simple_repeat 2 57 0 464 282 110 27 chr11 34676915 34677386 -116106167 - L1MEd LINE L1 -4784 1526 981 337 320 74 29 chr11 34677505 34677680 -116105873 - L1MEd LINE L1 -5448 671 489 351 338 71 71 chr11 34677700 34678138 -116105415 - L1MEd LINE L1 -5666 453 16 1426 173 60 25 chr11 34678307 34678591 -116104962 + AluJo SINE Alu 1 294 -18 822 286 168 28 chr11 34678892 34679280 -116104273 - L2 LINE L2 -5 3308 2867 449 123 0 0 chr11 34679758 34679823 -116103730 - AluS SINE Alu -13 297 233 2004 127 0 0 chr11 34681246 34681521 -116102032 - AluSx SINE Alu -37 275 1 2096 109 11 0 chr11 34682320 34682604 -116100949 + AluSq SINE Alu 1 287 -26 1188 125 0 180 chr11 34682892 34683164 -116100389 + AluJb SINE Alu 65 287 -25 2309 51 14 20 chr11 34683694 34683988 -116099565 + AluY SINE Alu 1 292 -19 686 164 8 16 chr11 34684534 34684656 -116098897 - FLAM_C SINE Alu -12 121 1 26 50 0 0 chr11 34684970 34685010 -116098543 + AT_rich Low_complexity Low_complexity 1 40 0 1294 269 203 4 chr11 34685387 34685710 -116097843 + L1MC4 LINE L1 7191 7448 -594 1330 114 249 0 chr11 34685710 34685947 -116097606 + AluSx SINE Alu 1 296 -6 1294 269 203 4 chr11 34685947 34686332 -116097221 + L1MC4 LINE L1 7448 8040 -2 260 305 47 23 chr11 34687559 34687687 -116095866 - MER5B DNA MER1_type -42 136 6 237 250 162 0 chr11 34687716 34687784 -116095769 + MIR3 SINE MIR 121 199 -9 26 74 0 0 chr11 34688446 34688500 -116095053 + AT_rich Low_complexity Low_complexity 1 54 0 33 25 0 0 chr11 34691793 34691833 -116091720 + AT_rich Low_complexity Low_complexity 1 40 0 185 108 27 0 chr11 34692524 34692561 -116090992 + (CATA)n Simple_repeat Simple_repeat 1 38 0 296 206 0 0 chr11 34693902 34693970 -116089583 - HAL1 LINE L1 -343 2164 2097 1435 184 63 24 chr11 34694275 34694606 -116088947 - MER2 DNA MER2_type 0 344 1 1845 191 137 2 chr11 34694704 34695165 -116088388 - Charlie1b DNA MER1_type 0 523 1 1728 149 8 4 chr11 34695595 34695863 -116087690 + AluSx SINE Alu 1 269 -43 2017 86 16 0 chr11 34695867 34696123 -116087430 + AluY SINE Alu 32 291 -20 307 325 17 8 chr11 34696680 34696800 -116086753 + L1M4 LINE L1 4915 5035 -1111 1335 172 19 15 chr11 34696855 34697117 -116086436 + AluJb SINE Alu 33 295 -17 1528 170 43 18 chr11 34697278 34697560 -116085993 + AluJb SINE Alu 1 289 -23 32 0 0 0 chr11 34697561 34697593 -116085960 + AT_rich Low_complexity Low_complexity 1 32 0 2121 104 0 16 chr11 34697655 34697963 -116085590 + AluY SINE Alu 1 303 -8 2188 110 0 19 chr11 34698082 34698391 -116085162 + AluSx SINE Alu 1 303 -9 896 209 0 0 chr11 34698532 34698680 -116084873 + FRAM SINE Alu 1 146 -30 21 36 0 0 chr11 34698686 34698714 -116084839 + AT_rich Low_complexity Low_complexity 1 28 0 301 302 119 0 chr11 34698876 34699002 -116084551 - L2 LINE L2 -2 3311 3171 866 141 7 7 chr11 34699012 34699147 -116084406 + AluJo SINE Alu 1 135 -177 1526 167 44 24 chr11 34699147 34699441 -116084112 + AluJo SINE Alu 1 300 -12 1987 108 65 0 chr11 34699443 34699721 -116083832 + AluSg SINE Alu 1 296 -14 600 222 45 57 chr11 34700362 34700538 -116083015 + MER5B DNA MER1_type 2 175 -3 2073 124 7 0 chr11 34700546 34700837 -116082716 + AluSx SINE Alu 4 296 -16 421 231 0 0 chr11 34700861 34700939 -116082614 - Charlie4 DNA MER1_type -17 1944 1867 663 163 47 16 chr11 34700990 34701119 -116082434 - FLAM_A SINE Alu 0 133 1 508 176 84 53 chr11 34701203 34701334 -116082219 - Charlie4 DNA MER1_type -1802 159 25 2003 110 39 29 chr11 34701742 34701865 -116081688 + AluSx SINE Alu 1 121 -191 2284 105 0 0 chr11 34701865 34702191 -116081362 + AluSx SINE Alu 1 326 0 2003 110 39 29 chr11 34702191 34702373 -116081180 + AluSx SINE Alu 121 312 0 2004 139 3 0 chr11 34702703 34702998 -116080555 + AluJb SINE Alu 1 296 -16 3330 166 77 42 chr11 34703047 34703322 -116080231 - L1MB8 LINE L1 0 6178 5914 1778 172 17 0 chr11 34703322 34703613 -116079940 - AluJb SINE Alu -15 297 2 3330 166 77 42 chr11 34703613 34704170 -116079383 - L1MB8 LINE L1 -264 5914 5378 1490 138 0 24 chr11 34704170 34704416 -116079137 + AluSg/x SINE Alu 69 308 -2 3330 166 77 42 chr11 34704416 34704435 -116079118 - L1MB8 LINE L1 -800 5378 5361 771 182 0 0 chr11 34704435 34704556 -116078997 - FLAM_A SINE Alu -12 121 1 3330 166 77 42 chr11 34704556 34704661 -116078892 - L1MB8 LINE L1 -817 5361 5190 1087 166 156 70 chr11 34704747 34704807 -116078746 - Charlie1 DNA MER1_type 0 2761 2708 2186 90 14 3 chr11 34704807 34705096 -116078457 + AluSg SINE Alu 1 292 -18 1087 166 156 70 chr11 34705096 34705452 -116078101 - Charlie1 DNA MER1_type -53 2708 2309 773 222 0 0 chr11 34705620 34705803 -116077750 + FRAM SINE Alu 1 47 0 2213 111 0 13 chr11 34706616 34706922 -116076631 - AluSg SINE Alu -3 307 6 2226 103 0 31 chr11 34707203 34707524 -116076029 + AluY SINE Alu 1 311 0 705 143 9 0 chr11 34708827 34708932 -116074621 + FLAM_C SINE Alu 14 119 -24 23 0 0 0 chr11 34708940 34708963 -116074590 + AT_rich Low_complexity Low_complexity 1 23 0 2397 93 0 6 chr11 34709199 34709511 -116074042 + AluSx SINE Alu 1 310 -2 377 242 155 19 chr11 34710172 34710333 -116073220 + L1MC5 LINE L1 7749 7931 -30 245 199 273 28 chr11 34710603 34710779 -116072774 + L1MC4 LINE L1 7162 7380 -662 270 183 65 54 chr11 34710843 34710936 -116072617 + L1MC5 LINE L1 7301 7394 -567 409 257 163 47 chr11 34711056 34711302 -116072251 + L1MC4 LINE L1 7617 7924 -118 1464 152 17 42 chr11 34711302 34711442 -116072111 + AluJb SINE Alu 3 134 -178 2269 93 3 3 chr11 34711442 34711752 -116071801 + AluSx SINE Alu 1 310 -2 1464 152 17 42 chr11 34711752 34711900 -116071653 + AluJb SINE Alu 134 284 -28 409 257 163 47 chr11 34711900 34712034 -116071519 + L1MC4 LINE L1 7924 8041 -1 351 209 301 13 chr11 34714147 34714300 -116069253 + MIR SINE MIR 32 228 -34 532 154 0 0 chr11 34714320 34714398 -116069155 + AluSx SINE Alu 3 80 -233 2340 51 3 42 chr11 34714400 34714711 -116068842 + AluY SINE Alu 1 299 -12 1543 102 58 9 chr11 34714711 34714935 -116068618 + AluSx SINE Alu 66 302 -8 794 138 24 0 chr11 34715344 34715467 -116068086 - MER46A DNA MER2_type -84 152 27 1445 68 0 0 chr11 34715476 34715653 -116067900 - AluSg/x SINE Alu -10 302 126 2037 98 6 35 chr11 34715653 34715969 -116067584 - AluY SINE Alu -4 307 1 225 133 0 0 chr11 34715969 34715999 -116067554 - MER46A DNA MER2_type -206 30 1 300 27 0 0 chr11 34716000 34716037 -116067516 + (TA)n Simple_repeat Simple_repeat 2 38 0 2336 103 0 0 chr11 34716040 34716352 -116067201 - AluSx SINE Alu 0 312 1 1972 145 7 0 chr11 34716530 34716826 -116066727 - AluSx SINE Alu -14 298 1 227 278 120 0 chr11 34716862 34716970 -116066583 - L1MC4 LINE L1 -31 8011 7891 22 0 0 0 chr11 34716984 34717006 -116066547 + AT_rich Low_complexity Low_complexity 1 22 0 262 286 48 0 chr11 34717039 34717144 -116066409 - L1MC4 LINE L1 -140 7902 7793 1711 161 32 4 chr11 34717157 34717437 -116066116 + AluJo SINE Alu 1 288 -24 2368 67 0 26 chr11 34717470 34717783 -116065770 + AluY SINE Alu 1 305 -6 546 196 35 28 chr11 34717831 34717974 -116065579 + L2 LINE L2 1869 2012 -1302 1543 170 40 14 chr11 34718027 34718303 -116065250 - AluJo SINE Alu -29 283 1 256 254 30 0 chr11 34718305 34718372 -116065181 + L2 LINE L2 1998 2066 -1248 333 0 0 0 chr11 34718377 34718414 -116065139 + (TG)n Simple_repeat Simple_repeat 2 38 0 2342 103 0 0 chr11 34718899 34719209 -116064344 - AluSg SINE Alu 0 310 1 944 138 6 40 chr11 34719964 34720138 -116063415 - FRAM SINE Alu -17 159 1 1885 88 0 4 chr11 34721483 34721733 -116061820 + AluSg SINE Alu 60 308 -2 2237 124 0 0 chr11 34721946 34722253 -116061300 + AluSx SINE Alu 2 308 -4 2220 93 4 0 chr11 34722881 34723185 -116060368 + AluSc SINE Alu 1 305 0 509 182 30 6 chr11 34723289 34723458 -116060095 + L1ME1 LINE L1 4549 4757 -1389 901 46 28 0 chr11 34723496 34723604 -116059949 - HY1 scRNA scRNA -1 111 1 2179 222 35 4 chr11 34723609 34724100 -116059453 + L1ME1 LINE L1 5561 6066 -100 928 125 8 0 chr11 34724117 34724245 -116059308 + AluSq/x SINE Alu 1 129 -183 304 243 14 0 chr11 34724271 34724345 -116059208 + L1ME1 LINE L1 6074 6148 -18 2024 134 0 0 chr11 34724355 34724677 -116058876 + AluSx SINE Alu 1 322 0 2068 171 16 8 chr11 34724707 34725081 -116058472 + L1MB2 LINE L1 5793 6169 -2 305 211 39 59 chr11 34725205 34725369 -116058184 - LTR33 LTR ERVL -184 337 75 283 246 0 0 chr11 34725426 34725487 -116058066 - LTR67 LTR ERVL -2 555 495 913 252 41 31 chr11 34725696 34726014 -116057539 - L1MC4 LINE L1 -20 8022 7702 312 245 103 45 chr11 34726050 34726205 -116057348 - L1MC5 LINE L1 -469 7492 7329 268 266 186 9 chr11 34726206 34726319 -116057234 - L1MC4 LINE L1 -571 7471 7339 2001 146 0 3 chr11 34726384 34726679 -116056874 - AluJb SINE Alu -18 294 1 377 183 24 194 chr11 34726692 34726826 -116056727 + L1MEd LINE L1 991 1064 -5055 738 229 0 0 chr11 34726826 34726948 -116056605 + FLAM_A SINE Alu 1 122 -11 377 183 24 194 chr11 34726948 34727065 -116056488 + L1MEd LINE L1 1064 1199 -4920 1101 141 24 6 chr11 34727092 34727262 -116056291 - AluSq SINE Alu -140 173 1 609 296 60 40 chr11 34727316 34727667 -116055886 + L1MEd LINE L1 1313 1670 -4640 451 288 59 81 chr11 34727815 34728173 -116055380 + L1MEd LINE L1 1870 2219 -4091 2385 84 7 0 chr11 34728218 34728517 -116055036 - AluSp SINE Alu -7 306 6 380 295 48 14 chr11 34728555 34728765 -116054788 + L1MEd LINE L1 2213 2429 -3700 593 244 175 17 chr11 34728774 34728865 -116054688 + L2 LINE L2 2067 2142 -1172 1407 194 3 99 chr11 34728865 34729057 -116054496 - AluJo SINE Alu -18 284 132 279 0 0 0 chr11 34729057 34729088 -116054465 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1407 194 3 99 chr11 34729088 34729209 -116054344 - AluJo SINE Alu -170 132 1 593 244 175 17 chr11 34729209 34729351 -116054202 + L2 LINE L2 2142 2337 -977 840 161 0 32 chr11 34729357 34729512 -116054041 + FRAM SINE Alu 20 169 -7 1096 264 6 54 chr11 34729530 34729864 -116053689 + L2 LINE L2 2343 2660 -654 1220 221 78 10 chr11 34729864 34730172 -116053381 - LTR16B LTR ERVL 0 464 136 499 256 45 8 chr11 34730270 34730403 -116053150 + L2 LINE L2 2661 2798 -516 2826 101 16 0 chr11 34730634 34731001 -116052552 + THE1C LTR MaLR 1 373 -2 851 207 113 35 chr11 34731243 34731272 -116052281 + L1MC4 LINE L1 6805 6830 -1212 4573 106 36 2 chr11 34731272 34731885 -116051668 - MER51A LTR ERV1 0 634 1 851 207 113 35 chr11 34731885 34732111 -116051442 + L1MC4 LINE L1 6830 7080 -962 2371 70 3 0 chr11 34732131 34732415 -116051138 + AluSp SINE Alu 1 285 -28 2273 114 7 0 chr11 34732699 34733005 -116050548 - AluSg SINE Alu -2 308 1 1324 39 0 0 chr11 34733349 34733504 -116050049 + AluY SINE Alu 131 285 -26 1450 83 5 0 chr11 34733531 34733723 -116049830 + AluY SINE Alu 119 311 0 572 216 78 130 chr11 34733835 34733963 -116049590 + L1MC4 LINE L1 7267 7400 -642 2056 116 7 0 chr11 34733963 34734248 -116049305 - AluSx SINE Alu -25 287 1 572 216 78 130 chr11 34734248 34734288 -116049265 + L1MC4 LINE L1 7400 7441 -601 2705 209 46 60 chr11 34734288 34734902 -116048651 - MER77 LTR ERV1 0 605 1 572 216 78 130 chr11 34734902 34735102 -116048451 + L1MC4 LINE L1 7441 7617 -425 351 194 0 0 chr11 34735127 34735200 -116048353 - L1MB3 LINE L1 -202 5969 5897 822 195 7 66 chr11 34735336 34735608 -116047945 - L1MB2 LINE L1 -282 5887 5660 633 138 4 8 chr11 34735615 34735848 -116047705 + AluJb SINE Alu 6 307 -5 1851 172 32 130 chr11 34735849 34736207 -116047346 - L1MB2 LINE L1 -499 5672 5388 2197 117 0 0 chr11 34736207 34736505 -116047048 - AluSx SINE Alu -14 298 1 1851 172 32 130 chr11 34736505 34736745 -116046808 - L1MB2 LINE L1 -783 5388 5126 700 216 0 0 chr11 34736746 34736871 -116046682 - FLAM_C SINE Alu -12 131 7 981 160 27 5 chr11 34736871 34737058 -116046495 - L1MB2 LINE L1 -1005 5141 4951 2169 135 0 0 chr11 34737085 34737389 -116046164 - AluSx SINE Alu -8 304 1 2023 156 0 0 chr11 34738486 34738788 -116044765 - AluSx SINE Alu -10 302 1 2055 93 0 0 chr11 34738918 34739187 -116044366 - AluSx SINE Alu -5 307 39 225 0 0 0 chr11 34741083 34741108 -116042445 + (T)n Simple_repeat Simple_repeat 1 25 0 2199 82 3 17 chr11 34741270 34741582 -116041971 - AluY SINE Alu 0 311 1 1147 214 15 34 chr11 34741740 34742002 -116041551 + MIR SINE MIR 1 257 -5 209 309 0 0 chr11 34742153 34742208 -116041345 + (CTGGGG)n Simple_repeat Simple_repeat 4 58 0 1805 153 36 4 chr11 34742686 34742961 -116040592 - AluJb SINE Alu -26 286 3 1950 145 3 0 chr11 34743093 34743382 -116040171 - AluSx SINE Alu -22 290 1 402 294 21 7 chr11 34743673 34743816 -116039737 + L1MC4a LINE L1 5768 5912 -1896 2707 127 18 48 chr11 34743846 34744198 -116039355 - MSTC LTR MaLR 0 428 90 2260 101 10 0 chr11 34744198 34744496 -116039057 + AluSg SINE Alu 1 301 -9 2707 127 18 48 chr11 34744496 34744584 -116038969 - MSTC LTR MaLR -338 90 1 946 244 5 0 chr11 34745508 34745717 -116037836 - AluJb SINE Alu -102 210 1 2028 145 0 0 chr11 34745738 34746048 -116037505 - AluSx SINE Alu 0 310 1 940 140 86 53 chr11 34746426 34746836 -116036717 - LTR54B LTR ERV1 -4 494 1 2122 117 13 0 chr11 34747037 34747344 -116036209 + AluSq SINE Alu 1 311 -2 207 100 0 0 chr11 34747463 34747493 -116036060 + (T)n Simple_repeat Simple_repeat 1 30 0 186 353 24 24 chr11 34747607 34747692 -116035861 - MIR3 SINE MIR -8 200 116 23 55 0 18 chr11 34748287 34748325 -116035228 + AT_rich Low_complexity Low_complexity 1 39 -15 2327 114 0 0 chr11 34748325 34748632 -116034921 + AluSq SINE Alu 1 307 -6 23 55 0 18 chr11 34748632 34748648 -116034905 + AT_rich Low_complexity Low_complexity 39 54 0 648 35 59 12 chr11 34748648 34748733 -116034820 - HY3 scRNA scRNA -1 100 12 205 171 0 0 chr11 34748874 34748909 -116034644 - MIR SINE MIR -61 147 113 358 250 180 7 chr11 34748919 34749060 -116034493 + MLT1J LTR MaLR 15 218 -286 1941 110 3 66 chr11 34749065 34749383 -116034170 + AluSg1 SINE Alu 1 298 -11 525 257 151 0 chr11 34749512 34749664 -116033889 + MER5A DNA MER1_type 15 189 0 935 157 70 91 chr11 34749764 34749924 -116033629 - L1MB3 LINE L1 -2 6181 6019 192 40 0 0 chr11 34749924 34749949 -116033604 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 2155 93 0 4 chr11 34749949 34750229 -116033324 - AluSg SINE Alu -31 279 1 935 157 70 91 chr11 34750229 34750355 -116033198 - L1MB3 LINE L1 -162 6021 5902 888 266 105 53 chr11 34750358 34750719 -116032834 + LTR16A LTR ERVL 16 395 -55 4293 208 48 82 chr11 34750924 34751112 -116032441 - L1MB3 LINE L1 -743 5403 5210 1894 166 3 6 chr11 34751112 34751425 -116032128 - AluJb SINE Alu 0 312 1 4293 208 48 82 chr11 34751425 34751464 -116032089 - L1MB3 LINE L1 -936 5210 5171 2237 112 0 6 chr11 34751464 34751777 -116031776 - AluSq SINE Alu -2 311 1 4293 208 48 82 chr11 34751777 34751861 -116031692 - L1MB3 LINE L1 -975 5171 5086 2250 108 0 7 chr11 34751861 34752166 -116031387 - AluSx SINE Alu -9 303 1 4293 208 48 82 chr11 34752166 34752392 -116031161 - L1MB3 LINE L1 -1060 5086 4854 2106 126 13 0 chr11 34752392 34752693 -116030860 + AluSq SINE Alu 1 305 -8 4293 208 48 82 chr11 34752693 34752995 -116030558 - L1MB3 LINE L1 -1292 4854 4543 810 120 0 0 chr11 34752995 34753120 -116030433 + (TTCC)n Simple_repeat Simple_repeat 3 127 0 1812 139 0 36 chr11 34753127 34753408 -116030145 - AluJo SINE Alu -30 282 12 4293 208 48 82 chr11 34753408 34753464 -116030089 - L1MB3 LINE L1 -1609 4537 4481 2450 144 19 14 chr11 34753464 34753605 -116029948 - L1MA9 LINE L1 -7 6305 6166 204 40 0 0 chr11 34753605 34753630 -116029923 + (TG)n Simple_repeat Simple_repeat 2 26 0 2450 144 19 14 chr11 34753630 34753904 -116029649 - L1MA9 LINE L1 -146 6166 5888 4293 208 48 82 chr11 34753904 34754020 -116029533 - L1MB3 LINE L1 -1665 4481 4363 2439 103 0 0 chr11 34754020 34754332 -116029221 + AluSx SINE Alu 1 312 0 4293 208 48 82 chr11 34754332 34754845 -116028708 - L1MB3 LINE L1 -1783 4363 4112 769 265 64 45 chr11 34754846 34755130 -116028423 + HERV16 LTR ERVL 2352 2629 -2367 2053 112 25 3 chr11 34755130 34755416 -116028137 - AluSx SINE Alu -20 292 1 769 265 64 45 chr11 34755416 34755612 -116027941 + HERV16 LTR ERVL 2629 2922 -2074 470 299 55 0 chr11 34755745 34755872 -116027681 - MIR SINE MIR -111 151 18 180 310 23 81 chr11 34755897 34755984 -116027569 - MIR SINE MIR -110 98 17 2090 151 0 0 chr11 34756048 34756353 -116027200 + AluSx SINE Alu 1 305 -7 540 260 101 18 chr11 34756378 34756547 -116027006 + MIR SINE MIR 16 198 -64 2123 112 0 11 chr11 34756744 34757031 -116026522 + AluSx SINE Alu 1 284 -28 213 39 0 0 chr11 34757417 34757443 -116026110 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 2164 106 0 3 chr11 34757450 34757733 -116025820 - AluSg SINE Alu -24 286 5 1528 178 96 7 chr11 34757749 34758019 -116025534 - AluJb SINE Alu -18 294 1 1585 165 204 91 chr11 34758020 34758480 -116025073 + MLT2B1 LTR ERVL 9 520 0 * 2039 268 105 0 chr11 34758480 34759063 -116024490 - MER20B DNA MER1_type -136 647 3 2258 95 3 0 chr11 34759085 34759381 -116024172 - AluSx SINE Alu -15 297 1 447 215 75 3 chr11 34759461 34759604 -116023949 - MIR SINE MIR -65 143 39 253 241 9 107 chr11 34760633 34760648 -116022905 + L2 LINE L2 3171 3186 -86 2110 140 10 0 chr11 34760648 34760948 -116022605 - AluSx SINE Alu -9 303 1 253 241 9 107 chr11 34760948 34761044 -116022509 + L2 LINE L2 3186 3271 -1 527 273 157 12 chr11 34761239 34761520 -116022033 + L1ME4a LINE L1 5491 5825 -296 2617 64 0 0 chr11 34761520 34761831 -116021722 - AluY SINE Alu 0 311 1 527 273 157 12 chr11 34761831 34761868 -116021685 + L1ME4a LINE L1 5825 5855 -266 3542 205 30 27 chr11 34761901 34762075 -116021478 + L1MB2 LINE L1 4465 4637 -1509 2370 89 0 32 chr11 34762075 34762388 -116021165 + AluSq SINE Alu 1 303 -10 3542 205 30 27 chr11 34762388 34763052 -116020501 + L1MB2 LINE L1 4637 5305 -841 906 179 0 6 chr11 34763055 34763211 -116020342 + AluJb SINE Alu 120 274 -38 4480 149 51 37 chr11 34763228 34764019 -116019534 + L1MB2 LINE L1 5310 6121 -50 1426 158 0 138 chr11 34764019 34764368 -116019185 + AluJo SINE Alu 1 301 -11 4480 149 51 37 chr11 34764368 34764418 -116019135 + L1MB2 LINE L1 6121 6169 -2 253 235 0 0 chr11 34764429 34764480 -116019073 + AluSp SINE Alu 120 170 -133 2467 71 0 7 chr11 34764482 34764790 -116018763 - AluY SINE Alu -5 306 1 1694 155 0 36 chr11 34764791 34765069 -116018484 + AluJb SINE Alu 28 295 -17 276 261 99 28 chr11 34765085 34765106 -116018447 + L1MC/D LINE L1 5710 5728 -2080 2039 113 24 0 chr11 34765106 34765398 -116018155 + AluSx SINE Alu 11 309 -3 276 261 99 28 chr11 34765398 34765518 -116018035 + L1MC/D LINE L1 5728 5861 -1947 1784 160 10 10 chr11 34765759 34766052 -116017501 - AluJb SINE Alu -15 297 5 23 0 0 0 chr11 34766055 34766078 -116017475 + AT_rich Low_complexity Low_complexity 1 23 0 738 119 0 0 chr11 34766180 34766307 -116017246 - AluSg/x SINE Alu 0 334 208 422 190 51 0 chr11 34766308 34766387 -116017166 - MSTB2 LTR MaLR -372 85 3 2120 232 47 85 chr11 34766816 34767324 -116016229 - L2 LINE L2 -72 3241 2715 1803 114 12 0 chr11 34767324 34767570 -116015983 - AluSx SINE Alu -19 293 45 2120 232 47 85 chr11 34767570 34767594 -116015959 - L2 LINE L2 -598 2715 2692 13396 24 0 0 chr11 34767594 34769826 -116013727 - L1PA3 LINE L1 -7 6148 3917 2120 232 47 85 chr11 34769826 34769852 -116013701 - L2 LINE L2 -621 2692 2667 1982 139 0 0 chr11 34769852 34770132 -116013421 + AluSx SINE Alu 1 280 -32 245 0 86 0 chr11 34770136 34770171 -116013382 + A-rich Low_complexity Low_complexity 1 38 0 2120 232 47 85 chr11 34770171 34770642 -116012911 - L2 LINE L2 -649 2664 2236 2109 122 3 3 chr11 34770651 34770947 -116012606 + AluSx SINE Alu 1 296 -16 2608 55 0 0 chr11 34770979 34771290 -116012263 + AluY SINE Alu 1 311 0 387 119 0 0 chr11 34771355 34771422 -116012131 + (ATG)n Simple_repeat Simple_repeat 2 68 0 408 104 0 0 chr11 34771565 34771632 -116011921 + (ATG)n Simple_repeat Simple_repeat 2 68 0 2483 65 0 0 chr11 34771632 34771925 -116011628 - AluSx SINE Alu -17 295 3 307 288 42 17 chr11 34772435 34772553 -116011000 - L1ME LINE L1 -462 5659 5539 2234 93 10 0 chr11 34772728 34773018 -116010535 - AluSg SINE Alu -17 293 1 1727 166 58 7 chr11 34773319 34773614 -116009939 + AluJo SINE Alu 1 310 -2 2359 110 0 0 chr11 34773741 34774042 -116009511 + AluSq SINE Alu 1 301 -12 821 125 0 8 chr11 34774205 34774325 -116009228 - FLAM_C SINE Alu -14 119 1 2256 103 13 3 chr11 34774942 34775242 -116008311 + AluSc SINE Alu 1 303 -6 1647 182 26 26 chr11 34775599 34775906 -116007647 - AluJo SINE Alu -5 307 1 2343 90 0 0 chr11 34775916 34776216 -116007337 - AluY SINE Alu -11 300 1 218 254 34 34 chr11 34776269 34776328 -116007225 + L2 LINE L2 3204 3262 -10 355 287 96 12 chr11 34776914 34777081 -116006472 + MIR SINE MIR 5 185 -77 729 145 176 6 chr11 34777097 34777256 -116006297 - AluSq SINE Alu -1 312 127 868 201 43 0 chr11 34777263 34777447 -116006106 - L1MC1 LINE L1 0 6333 6142 691 168 44 0 chr11 34777494 34777607 -116005946 + FLAM_C SINE Alu 1 118 -15 338 0 0 23 chr11 34777607 34777650 -116005903 + (CA)n Simple_repeat Simple_repeat 1 42 0 233 125 0 0 chr11 34777650 34777682 -116005871 + Alu SINE Alu 89 120 -182 275 0 0 28 chr11 34777682 34777718 -116005835 + (CA)n Simple_repeat Simple_repeat 1 35 0 198 0 0 0 chr11 34777744 34777766 -116005787 + (CA)n Simple_repeat Simple_repeat 2 23 0 674 184 0 0 chr11 34777805 34777919 -116005634 - FLAM_A SINE Alu -20 122 9 347 315 103 38 chr11 34778571 34778755 -116004798 - MIR SINE MIR -44 218 23 1702 186 135 35 chr11 34778871 34779413 -116004140 + L1MC4 LINE L1 7442 8037 -5 1283 192 121 11 chr11 34779609 34779890 -116003663 - AluJo SINE Alu 0 312 1 670 255 90 0 chr11 34779935 34780135 -116003418 + MIR SINE MIR 10 227 -35 2054 119 0 11 chr11 34780139 34780425 -116003128 + AluSx SINE Alu 1 283 -29 2135 102 7 0 chr11 34781010 34781293 -116002260 - AluSg SINE Alu -25 285 1 765 164 0 8 chr11 34781303 34781431 -116002122 - FLAM_C SINE Alu -16 127 1 268 320 114 46 chr11 34782134 34782309 -116001244 - L3 LINE CR1 -20 1557 1371 1714 154 13 10 chr11 34782309 34782607 -116000946 + AluJo SINE Alu 1 299 -13 23 0 0 0 chr11 34782623 34782646 -116000907 + AT_rich Low_complexity Low_complexity 1 23 0 1908 129 39 4 chr11 34782760 34783040 -116000513 - AluSx SINE Alu -22 290 1 1418 181 58 24 chr11 34783043 34783335 -116000218 - AluJo SINE Alu -10 302 1 817 152 0 35 chr11 34783994 34784139 -115999414 - FLAM_C SINE Alu -3 140 1 508 191 351 0 chr11 34784185 34784353 -115999200 + MIR SINE MIR 9 235 -27 195 351 91 0 chr11 34784705 34784782 -115998771 + MIR3 SINE MIR 15 98 -110 343 248 111 0 chr11 34784783 34784900 -115998653 - MLT1H LTR MaLR 0 549 420 2214 88 7 3 chr11 34784997 34785280 -115998273 + AluSq SINE Alu 15 298 -15 1034 266 109 20 chr11 34785507 34786113 -115997440 - L2 LINE L2 -50 3263 2612 3724 234 171 20 chr11 34786114 34787496 -115996057 - L2 LINE L2 -453 2861 1272 187 339 43 35 chr11 34787499 34787614 -115995939 - MIR SINE MIR -42 220 105 2456 75 0 7 chr11 34787760 34788067 -115995486 - AluY SINE Alu -6 305 1 2093 132 0 0 chr11 34788325 34788614 -115994939 + AluSx SINE Alu 14 302 -10 1559 130 27 48 chr11 34788793 34789005 -115994548 + L1MB8 LINE L1 5702 5907 -271 2105 108 3 7 chr11 34789005 34789311 -115994242 - AluSx SINE Alu 0 305 1 1559 130 27 48 chr11 34789311 34789428 -115994125 + L1MB8 LINE L1 5907 6025 -153 872 303 64 38 chr11 34790276 34790728 -115992825 + LTR16B LTR ERVL 1 464 0 198 313 131 20 chr11 34791446 34791545 -115992008 - L2 LINE L2 -4 3309 3200 507 200 296 0 chr11 34791979 34792114 -115991439 - MER5B DNA MER1_type -3 175 1 2488 218 238 16 chr11 34792189 34792440 -115991113 + L1MC4 LINE L1 6718 6912 -1130 1747 164 3 33 chr11 34792440 34792744 -115990809 - AluJo SINE Alu -12 300 6 2488 218 238 16 chr11 34792744 34793505 -115990048 + L1MC4 LINE L1 6912 8041 -1 537 287 0 38 chr11 34795767 34795924 -115987629 - MIR3 SINE MIR -18 190 40 2414 95 0 0 chr11 34796090 34796395 -115987158 - AluSg SINE Alu -5 305 1 2086 154 3 0 chr11 34796640 34796951 -115986602 - AluSx SINE Alu 0 312 1 1748 153 7 24 chr11 34797153 34797447 -115986106 - AluJo SINE Alu -23 289 1 571 241 53 0 chr11 34797516 34797649 -115985904 - MIR SINE MIR -5 257 118 819 225 0 6 chr11 34797670 34797843 -115985710 - AluJo SINE Alu -20 292 121 196 337 54 11 chr11 34797863 34797955 -115985598 - L3b LINE CR1 -369 1214 1119 324 102 0 0 chr11 34798233 34798282 -115985271 + (TGGA)n Simple_repeat Simple_repeat 4 52 0 2242 136 95 3 chr11 34798540 34798930 -115984623 - MSTB LTR MaLR 0 426 1 194 0 39 0 chr11 34799442 34799468 -115984085 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 475 312 35 69 chr11 34799883 34800114 -115983439 - L2 LINE L2 -62 3210 2988 1415 94 80 0 chr11 34800315 34800528 -115983025 + MER30 DNA MER1_type 1 230 0 579 301 235 26 chr11 34800647 34801535 -115982018 - L2 LINE L2 -657 2657 1584 977 298 69 16 chr11 34801691 34802054 -115981499 - L2 LINE L2 -12 3301 2920 300 354 113 40 chr11 34802227 34802786 -115980767 + L2 LINE L2 2626 3231 -41 2180 110 0 16 chr11 34803107 34803424 -115980129 - AluSx SINE Alu 0 312 1 2350 113 0 0 chr11 34803430 34803740 -115979813 - AluSg SINE Alu 0 310 1 2368 77 0 0 chr11 34804015 34804300 -115979253 - AluSc SINE Alu -24 285 1 379 221 76 35 chr11 34805376 34805521 -115978032 - MIR SINE MIR -109 153 3 1799 145 26 23 chr11 34805841 34806144 -115977409 - AluJb SINE Alu -8 304 1 2155 129 0 10 chr11 34807586 34807896 -115975657 + AluSx SINE Alu 1 307 -5 2062 82 42 49 chr11 34808308 34808614 -115974939 - AluSp SINE Alu -9 304 1 277 372 115 0 chr11 34808851 34808999 -115974554 + MIR3 SINE MIR 37 201 -7 387 0 0 0 chr11 34809016 34809059 -115974494 + (TG)n Simple_repeat Simple_repeat 2 44 0 1992 142 3 0 chr11 34809060 34809348 -115974205 - AluSx SINE Alu -23 289 1 357 240 134 39 chr11 34809804 34809983 -115973570 - L1MC4 LINE L1 -15 8027 7832 21 36 0 0 chr11 34810852 34810880 -115972673 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr11 34811763 34811786 -115971767 + AT_rich Low_complexity Low_complexity 1 23 0 1662 164 38 7 chr11 34812675 34812962 -115970591 + AluJo SINE Alu 1 296 -16 1797 160 0 7 chr11 34815209 34815514 -115968039 - AluJb SINE Alu 0 308 6 1866 136 14 7 chr11 34815553 34815833 -115967720 - AluSx SINE Alu -30 282 1 1809 151 0 25 chr11 34816158 34816442 -115967111 + AluJo SINE Alu 6 282 -30 209 105 0 26 chr11 34816444 34816482 -115967071 + (GGAA)n Simple_repeat Simple_repeat 4 40 0 231 253 25 0 chr11 34816659 34816738 -115966815 + (TA)n Simple_repeat Simple_repeat 2 82 0 367 284 151 46 chr11 34818370 34818588 -115964965 + MIR SINE MIR 20 260 -2 212 263 13 26 chr11 34818588 34818664 -115964889 + (TAG)n Simple_repeat Simple_repeat 3 77 0 29 60 0 0 chr11 34821584 34821634 -115961919 + AT_rich Low_complexity Low_complexity 1 50 0 383 326 41 0 chr11 34822875 34823022 -115960531 - MIR SINE MIR -59 203 51 1385 213 129 23 chr11 34823413 34823840 -115959713 - L1ME3A LINE L1 -249 5921 5450 185 194 0 0 chr11 34824074 34824105 -115959448 + L2 LINE L2 3255 3285 -28 507 280 236 16 chr11 34824113 34824699 -115958854 - L2 LINE L2 -6 3307 2594 982 224 29 0 chr11 34824733 34824979 -115958574 - L1ME3A LINE L1 -918 5228 4976 364 278 67 93 chr11 34825396 34825539 -115958014 - L1MC4 LINE L1 0 8042 7897 2231 102 3 0 chr11 34825539 34825824 -115957729 - AluSx SINE Alu -26 286 1 364 278 67 93 chr11 34825824 34826141 -115957412 - L1MC4 LINE L1 -145 7897 7594 2318 96 0 0 chr11 34826154 34826446 -115957107 - AluSx SINE Alu -9 303 12 933 231 203 48 chr11 34826668 34827087 -115956466 - L1MC4 LINE L1 -749 7293 6810 194 350 73 8 chr11 34827682 34827805 -115955748 + L2 LINE L2 3183 3313 0 196 339 110 18 chr11 34827825 34827934 -115955619 + MIR SINE MIR 31 149 -59 376 272 138 46 chr11 34827937 34828235 -115955318 - MER102a DNA MER1_type -2 328 7 847 210 0 25 chr11 34828436 34828598 -115954955 - FRAM SINE Alu -18 158 1 2608 49 0 3 chr11 34828610 34829100 -115954453 - AluY SINE Alu 0 489 1 260 293 28 47 chr11 34829407 34829513 -115954040 - MIR SINE MIR -78 184 81 2094 99 0 25 chr11 34829518 34829802 -115953751 + AluSx SINE Alu 1 277 -35 279 54 0 0 chr11 34829802 34829839 -115953714 + (CAAAA)n Simple_repeat Simple_repeat 3 39 0 2388 203 61 85 chr11 34829930 34830210 -115953343 + MER63D DNA MER1_type 8 293 -768 420 20 0 0 chr11 34830210 34830259 -115953294 + (TATAG)n Simple_repeat Simple_repeat 2 50 0 2388 203 61 85 chr11 34830259 34830899 -115952654 + MER63D DNA MER1_type 293 906 -155 5811 173 30 9 chr11 34830905 34831957 -115951596 - Tigger6a DNA MER2_type -7 1076 3 836 176 27 0 chr11 34831963 34832111 -115951442 + MER63D DNA MER1_type 911 1062 0 605 287 24 83 chr11 34832438 34832776 -115950777 - MLT1I LTR MaLR -19 390 73 808 159 7 29 chr11 34832833 34832971 -115950582 + MER2 DNA MER2_type 1 135 -210 1644 150 11 28 chr11 34832972 34833258 -115950295 + AluJo SINE Alu 1 281 -31 486 49 0 0 chr11 34833261 34833322 -115950231 + (CATA)n Simple_repeat Simple_repeat 2 62 0 1732 148 27 40 chr11 34833368 34833552 -115950001 - AluJb SINE Alu -18 294 114 240 35 0 0 chr11 34833552 34833581 -115949972 + (TTA)n Simple_repeat Simple_repeat 2 30 0 1732 148 27 40 chr11 34833581 34833694 -115949859 - AluJb SINE Alu -198 114 1 659 196 119 26 chr11 34833695 34833889 -115949664 + MER2 DNA MER2_type 126 337 -8 290 165 44 121 chr11 34834080 34834145 -115949408 + MER5A DNA MER1_type 9 68 -121 2128 113 0 3 chr11 34834145 34834460 -115949093 + AluSx SINE Alu 1 314 0 290 165 44 121 chr11 34834460 34834484 -115949069 + MER5A DNA MER1_type 68 92 -97 195 235 0 0 chr11 34834509 34834607 -115948946 + T-rich Low_complexity Low_complexity 1 98 0 426 130 60 10 chr11 34834863 34834963 -115948590 + CT-rich Low_complexity Low_complexity 2 106 0 667 181 39 0 chr11 34835425 34835552 -115948001 - FLAM_C SINE Alu 0 133 2 1911 183 68 7 chr11 34835573 34835984 -115947569 - L1MB8 LINE L1 -101 6077 5642 2213 106 0 0 chr11 34836364 34836666 -115946887 - AluSx SINE Alu 0 302 1 210 336 72 0 chr11 34836945 34837070 -115946483 + L2 LINE L2 2606 2739 -575 2296 92 3 0 chr11 34837474 34837768 -115945785 - AluSx SINE Alu -17 295 1 686 305 64 17 chr11 34838200 34838436 -115945117 - MIR SINE MIR -4 258 12 2337 101 0 19 chr11 34838890 34839206 -115944347 - AluSg SINE Alu 0 310 1 258 105 0 0 chr11 34840144 34840182 -115943371 + (TCCC)n Simple_repeat Simple_repeat 3 40 0 2273 97 7 0 chr11 34840184 34840472 -115943081 - AluSx SINE Alu -22 290 1 970 230 169 16 chr11 34840700 34841079 -115942474 + L2 LINE L2 2873 3309 -4 276 290 28 19 chr11 34841085 34841192 -115942361 + L2 LINE L2 3158 3265 -7 187 258 48 16 chr11 34841363 34841425 -115942128 + L2 LINE L2 3243 3306 -7 34 72 0 0 chr11 34841760 34841829 -115941724 + GC_rich Low_complexity Low_complexity 1 69 0 28 29 0 0 chr11 34842091 34842126 -115941427 + GC_rich Low_complexity Low_complexity 1 35 0 27 29 0 0 chr11 34842462 34842496 -115941057 + GC_rich Low_complexity Low_complexity 1 34 0 237 158 18 35 chr11 34845358 34845415 -115938138 - L2 LINE L2 0 3272 3217 740 203 6 25 chr11 34845426 34845589 -115937964 + MIR SINE MIR 93 252 -10 205 232 36 0 chr11 34845619 34845675 -115937878 - L2 LINE L2 -26 3246 3189 1804 167 17 53 chr11 34846192 34846551 -115937002 - L1P LINE L1 -3389 2757 2412 183 129 0 0 chr11 34846675 34846706 -115936847 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 468 294 156 12 chr11 34846831 34846991 -115936562 - MER5A DNA MER1_type 0 189 7 2890 260 106 13 chr11 34847000 34848324 -115935229 - L2 LINE L2 -141 3172 1719 351 333 17 0 chr11 34849308 34849425 -115934128 - L2 LINE L2 -4 3268 3150 488 261 110 23 chr11 34849458 34849698 -115933855 - Charlie8 DNA MER1_type -1032 1385 36 4599 198 110 34 chr11 34849739 34851099 -115932454 - L1ME1 LINE L1 -5 6161 4905 1044 201 33 9 chr11 34851099 34851313 -115932240 - MER20 DNA MER1_type 0 219 1 4599 198 110 34 chr11 34851313 34852167 -115931386 - L1ME1 LINE L1 -1261 4905 4117 2224 113 0 7 chr11 34852167 34852460 -115931093 + AluSq SINE Alu 1 291 -22 4599 198 110 34 chr11 34852460 34852593 -115930960 - L1ME1 LINE L1 -2049 4117 3995 2030 145 0 0 chr11 34852593 34852907 -115930646 + AluSx SINE Alu 1 314 0 4599 198 110 34 chr11 34852907 34852970 -115930583 - L1ME1 LINE L1 -2171 3995 3559 2188 139 0 0 chr11 34853071 34853374 -115930179 - AluSx SINE Alu -9 303 1 197 219 0 0 chr11 34853498 34853539 -115930014 + MIR SINE MIR 97 137 -71 27 49 0 0 chr11 34853775 34853816 -115929737 + AT_rich Low_complexity Low_complexity 1 41 0 2472 127 33 0 chr11 34853868 34854231 -115929322 - THE1C LTR MaLR 0 375 1 2214 113 0 17 chr11 34854729 34855030 -115928523 - AluSx SINE Alu -14 298 3 390 306 125 23 chr11 34855443 34855659 -115927894 - L1ME LINE L1 -345 5776 5539 1925 164 7 0 chr11 34855834 34856127 -115927426 - AluSx SINE Alu -17 295 1 829 258 39 32 chr11 34856127 34856558 -115926995 - L1ME LINE L1 -584 5582 5052 1196 134 2 1 chr11 34856670 34857998 -115925555 - ALR/Alpha Satellite centromeric 0 1329 1 357 314 0 0 chr11 34858370 34858475 -115925078 - MIR SINE MIR -65 143 39 205 282 64 0 chr11 34859380 34859458 -115924095 + L2 LINE L2 3212 3294 -19 285 248 129 10 chr11 34859760 34859861 -115923692 + L2 LINE L2 3197 3309 -4 278 299 20 27 chr11 34861219 34861366 -115922187 + MIR SINE MIR 53 198 -64 386 299 130 0 chr11 34861390 34861567 -115921986 - MIR SINE MIR -10 252 53 618 254 21 0 chr11 34861707 34861849 -115921704 + MIR SINE MIR 13 157 -105 191 269 13 13 chr11 34861901 34861979 -115921574 + MIR SINE MIR 147 224 -38 1540 201 5 69 chr11 34862552 34862841 -115920712 + MLT1A1 LTR MaLR 1 307 -58 201 39 0 0 chr11 34862841 34862867 -115920686 + (TC)n Simple_repeat Simple_repeat 2 27 0 1540 201 5 69 chr11 34862867 34862892 -115920661 + MLT1A1 LTR MaLR 307 332 -33 542 28 14 0 chr11 34862892 34862964 -115920589 + (TCTA)n Simple_repeat Simple_repeat 4 76 0 1732 139 0 74 chr11 34862964 34863274 -115920279 - AluSx SINE Alu -22 290 4 1540 201 5 69 chr11 34863274 34863335 -115920218 + MLT1A1 LTR MaLR 330 354 -11 502 257 45 17 chr11 34864092 34864271 -115919282 + MLT1L LTR MaLR 135 318 -297 719 252 145 12 chr11 34864285 34864513 -115919040 + MLT1L LTR MaLR 266 615 0 988 258 83 67 chr11 34864873 34865393 -115918160 - L1MC4a LINE L1 -745 5555 5297 719 253 176 41 chr11 34865554 34865918 -115917635 - MLT1J2 LTR MaLR 0 450 34 243 0 0 0 chr11 34866568 34866595 -115916958 + (GA)n Simple_repeat Simple_repeat 1 27 0 2806 123 16 23 chr11 34867193 34867234 -115916319 - MSTA LTR MaLR 0 428 388 2899 16 0 0 chr11 34867234 34867547 -115916006 + AluYb8 SINE Alu 1 313 -5 2806 123 16 23 chr11 34867547 34867935 -115915618 - MSTA LTR MaLR -40 388 2 403 209 29 19 chr11 34869509 34869614 -115913939 + MIR SINE MIR 145 250 -12 454 301 27 7 chr11 34869795 34869941 -115913612 - MIR SINE MIR -112 150 2 194 167 62 0 chr11 34870028 34870076 -115913477 - L2 LINE L2 -8 3264 3214 457 299 72 12 chr11 34870084 34870251 -115913302 - MER91A DNA MER1_type -19 177 1 210 345 55 9 chr11 34870657 34870767 -115912786 - MIR SINE MIR -119 143 29 412 75 0 170 chr11 34870780 34870874 -115912679 + MADE1 DNA Mariner 3 80 0 520 281 65 19 chr11 34871778 34872162 -115911391 - L2 LINE L2 -213 3059 2595 333 0 0 0 chr11 34873407 34873444 -115910109 + (TG)n Simple_repeat Simple_repeat 2 38 0 232 214 18 0 chr11 34873446 34873502 -115910051 + (TA)n Simple_repeat Simple_repeat 2 58 0 765 288 9 35 chr11 34873559 34873785 -115909768 + MIR SINE MIR 28 247 -15 203 315 144 0 chr11 34873826 34873937 -115909616 + L2 LINE L2 1711 1837 -1477 523 203 31 47 chr11 34873938 34874066 -115909487 - MER106A DNA MER1_type 0 236 111 1678 265 150 43 chr11 34874067 34875010 -115908543 + L2 LINE L2 2163 3208 -105 1262 109 0 0 chr11 34875010 34875175 -115908378 - AluSq SINE Alu -140 173 9 383 274 0 11 chr11 34875178 34875273 -115908280 + L2 LINE L2 3216 3309 -4 2321 28 0 0 chr11 34876756 34877038 -115906515 - L1P LINE L1 -818 5328 5047 272 305 47 47 chr11 34877043 34877171 -115906382 + L2 LINE L2 3182 3309 -4 4420 154 34 73 chr11 34877171 34877205 -115906348 - Charlie1 DNA MER1_type 0 2761 2727 1617 186 10 7 chr11 34877205 34877511 -115906042 - AluJb SINE Alu -5 307 1 4420 154 34 73 chr11 34877511 34877950 -115905603 - Charlie1 DNA MER1_type -34 2727 2273 1670 174 7 14 chr11 34877950 34878231 -115905322 - AluJb SINE Alu -27 285 7 4420 154 34 73 chr11 34878231 34878677 -115904876 - Charlie1 DNA MER1_type -488 2273 1879 2136 131 0 3 chr11 34878677 34878968 -115904585 - AluSx SINE Alu -22 290 1 4420 154 34 73 chr11 34878968 34879034 -115904519 - Charlie1 DNA MER1_type -882 1879 1812 1518 154 47 50 chr11 34879040 34879338 -115904215 + MLT1B LTR MaLR 3 299 -91 358 230 44 62 chr11 34879861 34879974 -115903579 - MIR SINE MIR -65 143 33 210 349 47 12 chr11 34880004 34880090 -115903463 - MIR3 SINE MIR -110 98 10 309 325 109 18 chr11 34880553 34880836 -115902717 - MLT1K LTR MaLR -112 476 168 183 278 153 56 chr11 34881755 34881899 -115901654 - MIR SINE MIR -70 192 35 225 211 29 115 chr11 34881902 34882006 -115901547 + MLT1L LTR MaLR 39 133 -482 364 300 127 17 chr11 34882044 34882281 -115901272 + MLT1L LTR MaLR 240 502 -113 424 231 94 147 chr11 34882404 34882724 -115900829 + MLT1J LTR MaLR 205 507 -4 1957 150 0 3 chr11 34882961 34883255 -115900298 - AluJb SINE Alu -19 293 1 502 251 159 43 chr11 34884055 34884162 -115899391 - MIR3 SINE MIR -50 212 119 1438 190 100 31 chr11 34884162 34884483 -115899070 + MER2 DNA MER2_type 2 344 0 502 251 159 43 chr11 34884483 34884564 -115898989 - MIR3 SINE MIR -143 119 5 252 246 0 0 chr11 34885175 34885232 -115898321 - L2 LINE L2 0 3313 3257 574 162 86 19 chr11 34885330 34885435 -115898118 - MER81 DNA DNA 0 114 3 421 254 122 17 chr11 34885470 34885651 -115897902 - L2 LINE L2 -6 3307 3108 379 250 0 0 chr11 34885840 34885920 -115897633 + L1M1 LINE L1 418 497 -7068 416 277 15 22 chr11 34885975 34886112 -115897441 + L2 LINE L2 3176 3311 -2 374 335 49 57 chr11 34886139 34886384 -115897169 + L2 LINE L2 3028 3270 -2 1450 168 29 29 chr11 34886847 34887127 -115896426 + MER7A DNA MER2_type 1 278 -68 350 349 33 7 chr11 34887226 34887378 -115896175 - MER5A DNA MER1_type 0 189 34 232 194 45 60 chr11 34887378 34887445 -115896108 - MER34 LTR ERV1 -4 538 473 10000 157 206 21 chr11 34887448 34889549 -115894004 + L1M1 LINE L1 16 2759 -4806 3461 135 23 28 chr11 34889543 34889786 -115893767 + L1MA3 LINE L1 5623 5866 -439 * 2483 121 19 25 chr11 34889786 34890151 -115893402 - THE1B LTR MaLR -1 363 1 3461 135 23 28 chr11 34890151 34890523 -115893030 + L1MA3 LINE L1 5866 6235 -70 2508 36 0 13 chr11 34890651 34890952 -115892601 + AluY SINE Alu 1 297 -14 442 256 70 17 chr11 34892225 34892397 -115891156 + MIR SINE MIR 2 182 -80 192 200 0 0 chr11 34892897 34892937 -115890616 + (CA)n Simple_repeat Simple_repeat 1 40 0 1330 103 17 0 chr11 34894032 34894207 -115889346 + AluSq SINE Alu 1 178 -135 451 170 10 60 chr11 34895398 34895498 -115888055 - MER5B DNA MER1_type -83 95 1 739 275 130 43 chr11 34897473 34897935 -115885618 + MLT1J LTR MaLR 8 509 -2 335 306 35 0 chr11 34898008 34898093 -115885460 - MIR SINE MIR -91 117 30 2048 107 25 4 chr11 34898799 34899079 -115884474 + AluSg SINE Alu 1 286 -24 383 306 57 26 chr11 34900080 34900273 -115883280 + MIR SINE MIR 8 206 -56 30 59 0 0 chr11 34900706 34900757 -115882796 + AT_rich Low_complexity Low_complexity 1 51 0 2123 126 0 10 chr11 34901755 34902064 -115881489 + AluJb SINE Alu 1 306 -6 25 0 0 0 chr11 34902779 34902804 -115880749 + AT_rich Low_complexity Low_complexity 1 25 0 681 240 29 6 chr11 34903756 34903927 -115879626 + MER5B DNA MER1_type 4 178 0 195 114 0 0 chr11 34904479 34904514 -115879039 + (TTG)n Simple_repeat Simple_repeat 1 35 0 21 0 0 0 chr11 34904592 34904613 -115878940 + AT_rich Low_complexity Low_complexity 1 21 0 477 293 103 0 chr11 34904721 34904895 -115878658 + MIR SINE MIR 61 252 -10 271 311 66 33 chr11 34904913 34905064 -115878489 - L2 LINE L2 -178 3094 2939 250 306 0 56 chr11 34905066 34905156 -115878397 + MIR3 SINE MIR 73 158 -50 243 189 0 0 chr11 34906262 34906315 -115877238 + (ATG)n Simple_repeat Simple_repeat 1 53 0 219 270 95 32 chr11 34906857 34906983 -115876570 - MIR SINE MIR -10 252 119 213 290 22 91 chr11 34907735 34907906 -115875647 - MIR SINE MIR -70 138 34 1592 164 0 23 chr11 34908118 34908380 -115875173 - AluSx SINE Alu -14 298 43 302 292 29 36 chr11 34909707 34909844 -115873709 + MIR SINE MIR 96 231 -31 661 268 98 38 chr11 34909876 34910111 -115873442 + MIR SINE MIR 14 262 0 28 0 0 0 chr11 34910595 34910623 -115872930 + AT_rich Low_complexity Low_complexity 1 28 0 5198 89 12 6 chr11 34910633 34911296 -115872257 - PABL_B LTR ERV1 0 667 1 648 84 25 299 chr11 34911318 34911592 -115871961 - Tigger7 DNA MER2_type 0 2587 2389 530 284 77 64 chr11 34911780 34912107 -115871446 - L2 LINE L2 -106 3166 2836 723 300 65 14 chr11 34912160 34912437 -115871116 + MLT1F1 LTR MaLR 2 292 -250 2162 190 35 76 chr11 34912452 34913032 -115870521 - MER34B LTR ERV1 -5 560 5 1097 159 65 19 chr11 34913036 34913250 -115870303 + MLT1F1 LTR MaLR 343 566 -1 407 184 0 69 chr11 34913271 34913358 -115870195 + MIR3 SINE MIR 76 156 -52 476 221 107 27 chr11 34913490 34913639 -115869914 - MIR SINE MIR 0 262 102 23 0 0 0 chr11 34914234 34914257 -115869296 + AT_rich Low_complexity Low_complexity 1 23 0 1324 177 28 54 chr11 34914625 34914657 -115868896 - L1MB4 LINE L1 0 6180 6149 2308 99 0 3 chr11 34914657 34914959 -115868594 - AluSx SINE Alu -11 301 1 1324 177 28 54 chr11 34914959 34915243 -115868310 - L1MB4 LINE L1 -31 6149 5872 195 385 72 36 chr11 34915261 34915456 -115868097 + MIR3 SINE MIR 3 204 -4 308 280 13 0 chr11 34915551 34915626 -115867927 - L2 LINE L2 -43 3229 3154 270 292 58 50 chr11 34916175 34916295 -115867258 - MIR SINE MIR -122 140 20 2024 116 3 7 chr11 34916339 34916633 -115866920 - AluY SINE Alu -18 293 1 22 35 0 0 chr11 34916643 34916672 -115866881 + AT_rich Low_complexity Low_complexity 1 29 0 816 199 0 0 chr11 34916728 34916859 -115866694 - FLAM_C SINE Alu -10 133 3 569 269 70 76 chr11 34916907 34917249 -115866304 - L1MEd LINE L1 -4885 1234 895 593 194 26 65 chr11 34917428 34917583 -115865970 - MER53 DNA DNA -13 176 28 1541 242 176 35 chr11 34917642 34918266 -115865287 - L1MEd LINE L1 -5406 713 2 313 368 38 8 chr11 34919674 34919807 -115863746 - L2 LINE L2 -2 3270 3134 776 120 0 0 chr11 34919905 34920005 -115863548 - AluSq/x SINE Alu -194 118 19 1940 141 4 0 chr11 34920179 34920456 -115863097 + AluSx SINE Alu 1 278 -34 207 0 0 0 chr11 34920456 34920479 -115863074 + (CA)n Simple_repeat Simple_repeat 2 24 0 188 205 26 0 chr11 34920624 34920663 -115862890 - L2 LINE L2 -5 3308 3269 784 192 0 0 chr11 34920855 34920985 -115862568 - FLAM_A SINE Alu 0 133 4 617 290 97 45 chr11 34922515 34922899 -115860654 + MLT1I LTR MaLR 38 409 0 285 174 130 54 chr11 34923257 34923349 -115860204 + LTR33A LTR ERVL 421 519 -4 360 336 27 7 chr11 34923564 34923710 -115859843 - MIR3 SINE MIR -43 165 17 288 299 0 0 chr11 34924046 34924123 -115859430 + MIR SINE MIR 86 162 -100 2719 36 0 0 chr11 34924555 34924862 -115858691 + AluY SINE Alu 1 307 -4 489 331 50 0 chr11 34925415 34925575 -115857978 - MER91A DNA MER1_type -27 169 2 792 244 48 35 chr11 34926215 34926526 -115857027 + L1ME4a LINE L1 5584 5898 -223 668 68 0 0 chr11 34926672 34926760 -115856793 - Tigger3(Golem) DNA MER2_type -653 2376 2289 3730 147 41 23 chr11 34926762 34927341 -115856212 - L1MA4 LINE L1 -366 5934 5367 198 0 0 0 chr11 34927351 34927373 -115856180 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 2989 88 7 7 chr11 34927373 34927773 -115855780 - L1PA10 LINE L1 -17 6151 5749 3730 147 41 23 chr11 34927773 34928439 -115855114 - L1MA4 LINE L1 -933 5367 4666 222 156 22 0 chr11 34928439 34928484 -115855069 - MIR SINE MIR -72 190 145 22 35 0 0 chr11 34929579 34929608 -115853945 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr11 34929689 34929710 -115853843 + AT_rich Low_complexity Low_complexity 1 21 0 224 170 224 0 chr11 34931535 34931593 -115851960 + MIR SINE MIR 88 159 -49 22 0 0 0 chr11 34931734 34931756 -115851797 + AT_rich Low_complexity Low_complexity 1 22 0 1909 175 6 6 chr11 34932114 34932446 -115851107 + MER47A DNA MER2_type 35 366 0 356 238 24 0 chr11 34932826 34932910 -115850643 - LTR67 LTR ERVL -1 556 471 9655 192 66 64 chr11 34932910 34936033 -115847520 + L1MDa LINE L1 19 3157 -3383 335 320 134 43 chr11 34936048 34936420 -115847133 - LTR67 LTR ERVL -116 441 36 351 235 109 17 chr11 34937107 34937226 -115846327 + MIR SINE MIR 11 140 -122 510 285 10 48 chr11 34937731 34937755 -115845798 + MIR SINE MIR 43 66 -196 1577 193 13 10 chr11 34937755 34938060 -115845493 + AluJb SINE Alu 1 306 -6 510 285 10 48 chr11 34938060 34938242 -115845311 + MIR SINE MIR 66 241 -21 368 292 31 37 chr11 34938491 34938652 -115844901 + MIR SINE MIR 32 191 -71 344 314 22 23 chr11 34938906 34939091 -115844462 + MIR SINE MIR 62 242 -20 241 262 187 0 chr11 34939095 34939202 -115844351 - MIR SINE MIR -55 207 81 797 169 41 23 chr11 34939758 34939930 -115843623 - MER5B DNA MER1_type -3 175 1 2158 125 6 10 chr11 34940110 34940423 -115843130 - AluSx SINE Alu 0 312 1 737 319 23 21 chr11 34940730 34941165 -115842388 + L2 LINE L2 2057 2492 -822 1950 147 3 0 chr11 34941292 34941584 -115841969 + AluSx SINE Alu 14 306 -6 2433 117 20 3 chr11 34942016 34942368 -115841185 - L1PA15 LINE L1 -5 6160 5803 660 169 18 54 chr11 34942455 34942621 -115840932 - MIR SINE MIR 0 262 103 339 229 100 116 chr11 34943556 34943866 -115839687 - L2 LINE L2 -1 3312 3008 490 243 39 70 chr11 34944220 34944424 -115839129 - MIR SINE MIR -19 243 43 180 325 25 50 chr11 34945763 34945883 -115837670 - L2 LINE L2 -13 3300 3184 322 257 22 40 chr11 34945945 34946129 -115837424 + MER20B DNA MER1_type 2 214 -5 477 0 0 0 chr11 34946532 34946585 -115836968 + (TG)n Simple_repeat Simple_repeat 2 54 0 199 250 0 0 chr11 34946909 34946961 -115836592 + L2 LINE L2 3262 3313 0 477 329 66 21 chr11 34947088 34947331 -115836222 - MIR SINE MIR 0 262 9 331 244 47 47 chr11 34947599 34947726 -115835827 - L2 LINE L2 -218 3054 2928 255 131 16 98 chr11 34947751 34947812 -115835741 - MADE1 DNA Mariner 0 80 25 1013 238 112 35 chr11 34948583 34948652 -115834901 - MLT1K LTR MaLR -2 586 524 1377 22 11 6 chr11 34948652 34948830 -115834723 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 1013 238 112 35 chr11 34948830 34949282 -115834271 - MLT1K LTR MaLR -64 524 6 2114 98 14 0 chr11 34949282 34949559 -115833994 + AluSc SINE Alu 29 309 0 439 299 22 15 chr11 34949791 34949925 -115833628 - L2 LINE L2 0 3272 3138 2417 71 7 3 chr11 34950070 34950364 -115833189 - AluY SINE Alu -16 295 1 664 240 42 42 chr11 34950418 34950635 -115832918 + L2 LINE L2 3094 3310 -3 307 207 0 0 chr11 34950767 34950825 -115832728 - L2 LINE L2 -2 3311 3254 924 158 61 6 chr11 34950962 34951127 -115832426 + MLT1A2 LTR MaLR 1 174 -200 369 86 0 0 chr11 34951128 34951186 -115832367 + (TC)n Simple_repeat Simple_repeat 1 58 0 267 318 32 61 chr11 34951206 34951486 -115832067 - MLT1K LTR MaLR -158 430 159 201 253 67 0 chr11 34951702 34951777 -115831776 + L2 LINE L2 2983 3062 -210 214 233 50 117 chr11 34951858 34951898 -115831655 - MIR SINE MIR -78 184 143 1344 198 124 58 chr11 34951898 34952332 -115831221 - MLT1C LTR MaLR 0 467 5 214 233 50 117 chr11 34952332 34952411 -115831142 - MIR SINE MIR -119 143 73 2146 127 3 16 chr11 34952601 34952917 -115830636 - AluSx SINE Alu 0 312 1 337 298 107 0 chr11 34953107 34953228 -115830325 - L2 LINE L2 0 3313 3180 1670 199 0 7 chr11 34953424 34953716 -115829837 + AluJo SINE Alu 1 290 -22 434 300 62 19 chr11 34953854 34954014 -115829539 + MIR SINE MIR 25 191 -71 558 228 117 17 chr11 34954066 34954246 -115829307 + MIR SINE MIR 21 218 -44 1743 183 5 37 chr11 34954374 34954752 -115828801 - L1MB3 LINE L1 -1 6182 5817 276 344 45 6 chr11 34955407 34955564 -115827989 + L1ME LINE L1 5704 5866 -255 1578 208 86 36 chr11 34955672 34956148 -115827405 - MLT1D LTR MaLR 0 505 6 240 211 0 0 chr11 34956232 34956284 -115827269 + L2 LINE L2 3262 3313 0 183 156 0 0 chr11 34956824 34956856 -115826697 + (CA)n Simple_repeat Simple_repeat 1 32 0 298 298 11 0 chr11 34956883 34956977 -115826576 - MER117 DNA MER1_type -101 96 2 669 101 0 0 chr11 34957282 34957381 -115826172 + L1PB1 LINE L1 6053 6151 0 2322 105 0 3 chr11 34957399 34957703 -115825850 + AluSq SINE Alu 1 303 -10 333 200 0 0 chr11 34957841 34957906 -115825647 + L2 LINE L2 3005 3069 -244 334 306 130 0 chr11 34957934 34958042 -115825511 + L2 LINE L2 3150 3271 -1 1787 184 0 7 chr11 34958331 34958636 -115824917 - AluSx SINE Alu -9 303 1 295 179 62 116 chr11 34958861 34958934 -115824619 - L2 LINE L2 -33 3280 3213 350 294 48 8 chr11 34958934 34959060 -115824493 - MER94 DNA DNA -1 133 3 295 179 62 116 chr11 34959060 34959098 -115824455 - L2 LINE L2 -100 3213 3175 277 315 90 0 chr11 34959098 34959187 -115824366 - MER91A DNA MER1_type -10 186 90 200 337 10 0 chr11 34959409 34959507 -115824046 - L2 LINE L2 -132 3181 3083 301 220 0 33 chr11 34959598 34959689 -115823864 - L2 LINE L2 -230 3083 2996 190 333 0 14 chr11 34959854 34959926 -115823627 - L2 LINE L2 -57 3215 3145 691 215 20 0 chr11 34959998 34960147 -115823406 + MER103 DNA DNA 13 164 -2 2481 80 0 0 chr11 34960248 34960550 -115823003 + AluY SINE Alu 1 302 -9 198 279 0 15 chr11 34960777 34960845 -115822708 + MIR SINE MIR 99 165 -97 551 212 142 66 chr11 34964338 34964564 -115818989 - MIR SINE MIR 0 262 20 1931 157 7 0 chr11 34965302 34965601 -115817952 + AluSx SINE Alu 1 301 -11 1306 10 10 29 chr11 34965630 34965835 -115817718 + (GAAA)n Simple_repeat Simple_repeat 1 201 0 663 226 36 12 chr11 34966206 34966374 -115817179 + MIR SINE MIR 8 179 -83 229 69 0 0 chr11 34966684 34966713 -115816840 + HsTC2 DNA Tc2 33 61 -1837 771 209 16 16 chr11 34968216 34968398 -115815155 + MIR SINE MIR 80 261 -1 346 350 82 6 chr11 34969323 34969506 -115814047 + MIR SINE MIR 46 242 -20 786 224 34 6 chr11 34969569 34969748 -115813805 + MIR SINE MIR 7 190 -72 738 279 5 0 chr11 34969810 34970007 -115813546 - MIR SINE MIR -60 202 5 2377 92 0 0 chr11 34970536 34970828 -115812725 - AluSg SINE Alu -18 292 1 182 300 0 29 chr11 34971307 34971377 -115812176 - MIR3 SINE MIR -52 156 89 289 303 16 25 chr11 34971798 34971920 -115811633 - MIR SINE MIR -140 122 2 309 225 14 0 chr11 34973154 34973225 -115810328 - MIR3 SINE MIR -39 169 98 204 200 0 0 chr11 34973525 34973565 -115809988 - MIR SINE MIR -115 147 108 699 216 65 43 chr11 34975259 34975490 -115808063 - MER106A DNA MER1_type 0 236 1 2164 110 7 0 chr11 34976755 34977061 -115806492 - AluSx SINE Alu 0 309 2 405 270 7 51 chr11 34977223 34977360 -115806193 + MIR SINE MIR 19 149 -59 538 118 97 0 chr11 34977443 34977536 -115806017 - MER58 DNA MER1_type -1 2419 2318 380 211 9 140 chr11 34977548 34977577 -115805976 - MER58 DNA MER1_type -2321 99 68 2372 106 0 3 chr11 34977577 34977889 -115805664 - AluSx SINE Alu 0 312 2 380 211 9 140 chr11 34977889 34977973 -115805580 - MER58 DNA MER1_type -2352 68 1 549 201 77 48 chr11 34978014 34978223 -115805330 - MER113 DNA MER1_type? -306 215 1 228 289 70 26 chr11 34978709 34978823 -115804730 + MIR SINE MIR 110 228 -34 552 241 94 20 chr11 34978858 34979061 -115804492 - MER46C DNA MER2_type 0 338 121 181 30 91 0 chr11 34979079 34979112 -115804441 + (TATG)n Simple_repeat Simple_repeat 1 36 0 22 0 0 0 chr11 34979272 34979294 -115804259 + AT_rich Low_complexity Low_complexity 1 22 0 1990 110 3 14 chr11 34979306 34979588 -115803965 + AluSx SINE Alu 12 290 -22 2127 168 0 0 chr11 34979601 34979964 -115803589 - L1PA16 LINE L1 0 6166 5804 334 196 54 0 chr11 34980080 34980172 -115803381 + MIR SINE MIR 52 148 -114 210 293 100 53 chr11 34980678 34980828 -115802725 + MIR SINE MIR 72 228 -34 631 235 111 0 chr11 34980856 34981018 -115802535 - MIR SINE MIR -5 257 78 198 322 203 0 chr11 34981088 34981206 -115802347 + MIR SINE MIR 110 251 -11 225 154 0 0 chr11 34981676 34981715 -115801838 + (CA)n Simple_repeat Simple_repeat 2 40 0 585 206 132 74 chr11 34982102 34982342 -115801211 + MIR SINE MIR 8 252 -10 1844 144 35 11 chr11 34982359 34982644 -115800909 + AluJb SINE Alu 1 292 -20 2042 132 0 3 chr11 34982654 34982943 -115800610 + AluJb SINE Alu 4 291 -21 860 160 0 19 chr11 34982948 34983104 -115800449 + L1MB3 LINE L1 6030 6182 -1 202 291 73 0 chr11 34983219 34983274 -115800279 + L3 LINE CR1 1515 1573 -4 186 220 47 27 chr11 34983878 34984018 -115799535 + MIR SINE MIR 63 243 -19 411 289 68 32 chr11 34984932 34985181 -115798372 + MIR SINE MIR 1 258 -4 659 263 24 64 chr11 34986036 34986287 -115797266 - MIR SINE MIR 0 262 22 1755 168 7 13 chr11 34986567 34986865 -115796688 + AluJb SINE Alu 1 296 -16 2246 102 3 3 chr11 34987006 34987301 -115796252 - AluSx SINE Alu -17 295 1 475 256 25 0 chr11 34987843 34987964 -115795589 - MIR SINE MIR -11 251 128 388 275 203 43 chr11 34988259 34988535 -115795018 + MER102b DNA MER1_type 7 326 -15 22 0 0 0 chr11 34990480 34990502 -115793051 + AT_rich Low_complexity Low_complexity 1 22 0 234 267 100 17 chr11 34990968 34991088 -115792465 + MIR SINE MIR 10 139 -69 227 294 69 39 chr11 34991082 34991184 -115792369 + L2 LINE L2 3155 3259 -13 * 458 252 0 9 chr11 34991201 34991312 -115792241 - MIR SINE MIR -36 226 117 393 310 125 16 chr11 34991895 34992079 -115791474 - MIR SINE MIR -53 209 6 292 283 0 47 chr11 34993164 34993270 -115790283 - MIR3 SINE MIR -27 181 81 367 308 52 12 chr11 34993300 34993472 -115790081 + MIR SINE MIR 21 199 -63 225 303 30 61 chr11 34993555 34993687 -115789866 + L3 LINE CR1 1336 1463 -114 2103 120 17 3 chr11 34994236 34994535 -115789018 + AluSq SINE Alu 1 303 -10 423 220 17 51 chr11 34994839 34994957 -115788596 - MER94 DNA DNA -13 121 8 182 319 33 22 chr11 34996713 34996804 -115786749 + MIR3 SINE MIR 85 176 -32 434 293 49 12 chr11 34997548 34997712 -115785841 - MIR SINE MIR -1 261 92 537 333 96 15 chr11 34997798 34998204 -115785349 - L2 LINE L2 -1 3312 2874 617 161 153 0 chr11 34998212 34998349 -115785204 - MER3 DNA MER1_type -6 203 46 442 266 163 18 chr11 34998422 34998704 -115784849 - L2 LINE L2 -440 2874 2552 483 245 176 32 chr11 34999299 34999515 -115784038 - MIR SINE MIR -12 250 4 198 191 0 0 chr11 34999515 34999562 -115783991 + (CA)n Simple_repeat Simple_repeat 2 48 0 487 288 31 0 chr11 35000907 35001067 -115782486 + MIR SINE MIR 92 256 -6 271 361 122 5 chr11 35001253 35001458 -115782095 - L2 LINE L2 -371 2943 2715 1013 89 24 0 chr11 35001574 35001742 -115781811 + (TATAG)n Simple_repeat Simple_repeat 5 176 0 451 163 31 16 chr11 35001759 35001888 -115781665 + (TATAG)n Simple_repeat Simple_repeat 5 135 0 880 126 29 0 chr11 35001901 35002075 -115781478 + (TATAG)n Simple_repeat Simple_repeat 2 180 0 780 171 30 4 chr11 35002087 35002655 -115780898 + (TATAG)n Simple_repeat Simple_repeat 1 583 0 599 283 160 22 chr11 35002668 35003068 -115780485 - L2 LINE L2 -22 3291 2837 313 250 14 0 chr11 35003223 35003295 -115780258 + L2 LINE L2 2632 2704 -610 192 349 0 16 chr11 35003968 35004031 -115779522 + MIR SINE MIR 11 72 -190 570 291 109 5 chr11 35004194 35004404 -115779149 - MIR SINE MIR -26 236 5 2236 101 0 10 chr11 35004789 35005077 -115778476 + AluSx SINE Alu 1 287 -25 216 0 0 0 chr11 35005077 35005101 -115778452 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 878 117 0 8 chr11 35006411 35006539 -115777014 - FLAM_C SINE Alu -4 129 3 573 168 19 0 chr11 35007424 35007531 -115776022 - FLAM_A SINE Alu -10 132 24 567 245 40 0 chr11 35007768 35007919 -115775634 + Charlie8 DNA MER1_type 94 250 -2167 531 167 19 19 chr11 35008390 35008498 -115775055 - MLT1D LTR MaLR 0 467 360 300 154 0 0 chr11 35008528 35008580 -115774973 + A-rich Low_complexity Low_complexity 1 52 0 662 234 149 63 chr11 35008581 35008773 -115774780 - MLT1D LTR MaLR -162 343 112 2089 122 10 7 chr11 35008773 35009068 -115774485 - AluSq SINE Alu -15 298 3 662 234 149 63 chr11 35009068 35009191 -115774362 - MLT1D LTR MaLR -393 112 1 1918 161 0 0 chr11 35009286 35009584 -115773969 + AluJb SINE Alu 1 298 -14 2023 127 3 50 chr11 35009791 35010114 -115773439 + AluSx SINE Alu 1 308 -4 2072 136 0 3 chr11 35010419 35010714 -115772839 - AluSx SINE Alu -18 294 1 3910 139 89 1 chr11 35010823 35011483 -115772070 - LTR62 LTR ERVK -1 718 1 2183 92 7 14 chr11 35011567 35011862 -115771691 - AluSg SINE Alu -17 293 1 2823 141 33 18 chr11 35011891 35012402 -115771151 + L1MB8 LINE L1 5655 6173 -5 212 262 0 0 chr11 35012406 35012448 -115771105 + polypurine Low_complexity Low_complexity 3 44 0 250 212 12 12 chr11 35012448 35012533 -115771020 + GA-rich Low_complexity Low_complexity 3 87 0 394 192 323 0 chr11 35012535 35012634 -115770919 + FLAM_A SINE Alu 1 131 -2 818 113 70 0 chr11 35012717 35012859 -115770694 - L1MB3 LINE L1 0 6183 6032 1981 100 0 0 chr11 35012859 35013109 -115770444 - AluSx SINE Alu -62 250 1 2116 133 0 13 chr11 35013309 35013624 -115769929 - AluJb SINE Alu 0 312 2 195 283 0 0 chr11 35015331 35015377 -115768176 + MIR SINE MIR 65 110 -152 2335 237 117 13 chr11 35015433 35016141 -115767412 + MER21B LTR ERV1 7 788 -75 2186 122 0 0 chr11 35016146 35016440 -115767113 + AluSx SINE Alu 1 294 -18 758 168 8 0 chr11 35017226 35017345 -115766208 - FLAM_A SINE Alu -13 120 1 22 0 0 0 chr11 35017937 35017959 -115765594 + AT_rich Low_complexity Low_complexity 1 22 0 259 220 68 0 chr11 35018502 35018561 -115764992 - L2 LINE L2 -1 3312 3250 258 207 111 99 chr11 35018757 35019110 -115764443 - L1MEd LINE L1 -5078 1041 685 255 311 31 10 chr11 35019120 35019282 -115764271 - L1MDa LINE L1 -5106 1276 1056 2825 19 0 13 chr11 35019302 35019616 -115763937 - AluY SINE Alu -1 310 1 225 340 29 0 chr11 35020240 35020343 -115763210 - L1MDa LINE L1 -5945 427 322 231 305 30 38 chr11 35022466 35022597 -115760956 - MIR3 SINE MIR -49 159 30 1958 114 29 0 chr11 35023394 35023667 -115759886 + AluSx SINE Alu 1 281 -31 204 40 0 0 chr11 35023670 35023695 -115759858 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 378 224 56 0 chr11 35023698 35023823 -115759730 + L1ME4a LINE L1 5990 6121 0 1748 143 29 29 chr11 35025358 35025665 -115757888 + AluJo SINE Alu 3 309 -3 207 328 101 35 chr11 35027864 35028062 -115755491 + L2 LINE L2 2904 3114 -158 2344 79 23 0 chr11 35028606 35028910 -115754643 + AluSx SINE Alu 1 311 -1 23 0 0 0 chr11 35030564 35030587 -115752966 + AT_rich Low_complexity Low_complexity 1 23 0 269 320 47 23 chr11 35031168 35031296 -115752257 - MIR SINE MIR -101 161 31 180 0 0 0 chr11 35032716 35032736 -115750817 + (CAT)n Simple_repeat Simple_repeat 2 21 0 1892 138 4 4 chr11 35033238 35033514 -115750039 - AluJb SINE Alu -10 302 27 191 284 45 15 chr11 35034634 35034701 -115748852 + MIR SINE MIR 190 258 -4 3665 149 65 2 chr11 35035927 35036496 -115747057 + MER6A DNA MER2_type 1 605 0 21 0 0 0 chr11 35037563 35037584 -115745969 + AT_rich Low_complexity Low_complexity 1 21 0 531 238 93 29 chr11 35038158 35038349 -115745204 + MIR SINE MIR 5 210 -52 596 163 131 44 chr11 35038769 35038929 -115744624 - MER5B DNA MER1_type -3 175 2 2191 91 3 10 chr11 35039068 35039364 -115744189 + AluSp SINE Alu 1 294 -19 212 237 97 21 chr11 35040133 35040226 -115743327 - MIR SINE MIR -66 196 97 2338 107 0 19 chr11 35040586 35040904 -115742649 - AluSx SINE Alu 0 312 1 21 0 0 0 chr11 35041132 35041153 -115742400 + AT_rich Low_complexity Low_complexity 1 21 0 2529 133 106 0 chr11 35041692 35042099 -115741454 + LTR47A LTR ERVL 1 450 -2 303 197 74 0 chr11 35042161 35042230 -115741323 + L1ME LINE L1 5606 5679 -483 770 234 106 56 chr11 35043233 35043491 -115740062 + MLT1J1 LTR MaLR 93 372 -74 2322 100 7 0 chr11 35043491 35043791 -115739762 - AluSp SINE Alu -11 302 1 770 234 106 56 chr11 35043791 35043852 -115739701 + MLT1J1 LTR MaLR 372 428 -18 2570 178 54 18 chr11 35043890 35044298 -115739255 + L1ME2 LINE L1 5281 5716 -448 1735 186 3 7 chr11 35044298 35044599 -115738954 - AluJb SINE Alu -12 300 1 2570 178 54 18 chr11 35044599 35044746 -115738807 + L1ME2 LINE L1 5716 5856 -308 254 313 30 22 chr11 35044747 35044881 -115738672 + L1MC4 LINE L1 7899 8033 -9 2292 102 0 0 chr11 35045265 35045560 -115737993 + AluSx SINE Alu 17 311 -1 205 381 62 0 chr11 35045667 35045764 -115737789 + MIR3 SINE MIR 13 115 -93 345 331 131 44 chr11 35046106 35046426 -115737127 + L2 LINE L2 2925 3272 0 249 254 118 64 chr11 35046509 35046619 -115736934 - L2 LINE L2 -1 3271 3156 1125 216 18 0 chr11 35048467 35048685 -115734868 - MIR SINE MIR -13 249 28 2208 112 0 13 chr11 35048988 35049293 -115734260 + AluSx SINE Alu 1 301 -11 25 51 0 0 chr11 35049482 35049521 -115734032 + AT_rich Low_complexity Low_complexity 1 39 0 2197 128 0 0 chr11 35050303 35050615 -115732938 + AluSx SINE Alu 1 312 0 2538 57 0 3 chr11 35050654 35050955 -115732598 - AluY SINE Alu -11 300 1 608 290 119 22 chr11 35051122 35051484 -115732069 - L1ME4a LINE L1 -205 5916 5520 185 337 70 47 chr11 35051619 35051705 -115731848 - L2 LINE L2 -6 3266 3179 545 270 13 33 chr11 35052533 35052685 -115730868 + MIR SINE MIR 6 154 -108 1237 253 47 24 chr11 35052733 35053157 -115730396 - MLT1J LTR MaLR -34 477 1 842 285 16 16 chr11 35053489 35053745 -115729808 - MIR SINE MIR -5 257 2 1884 113 50 3 chr11 35054869 35055151 -115728402 - AluSx SINE Alu -17 295 1 567 271 89 61 chr11 35055565 35055845 -115727708 + L2 LINE L2 3025 3312 -1 185 135 0 27 chr11 35055937 35055974 -115727579 - L3 LINE CR1 -1114 463 428 2314 99 3 0 chr11 35056067 35056361 -115727192 + AluSp SINE Alu 2 296 -17 2421 184 54 68 chr11 35056376 35057023 -115726530 + L1MC4 LINE L1 7405 8042 0 2149 123 0 7 chr11 35057311 35057612 -115725941 + AluSx SINE Alu 1 299 -13 1535 174 3 24 chr11 35057622 35057910 -115725643 + AluJo SINE Alu 11 292 -20 288 0 0 0 chr11 35058474 35058506 -115725047 + (A)n Simple_repeat Simple_repeat 1 32 0 2055 143 0 7 chr11 35059561 35059868 -115723685 + AluJo SINE Alu 1 305 -7 6172 127 28 12 chr11 35060368 35061512 -115722041 - L1MA4A LINE L1 -1 6302 4998 2079 127 3 0 chr11 35061825 35062116 -115721437 - AluSx SINE Alu -3 309 18 771 152 9 0 chr11 35062341 35062453 -115721100 + MER81 DNA DNA 2 114 0 427 227 58 122 chr11 35063029 35063372 -115720181 - L1ME4a LINE L1 -12 6109 5789 2245 114 0 0 chr11 35063906 35064204 -115719349 + AluSx SINE Alu 1 298 -14 26 64 0 0 chr11 35064308 35064355 -115719198 + AT_rich Low_complexity Low_complexity 1 47 0 490 76 0 0 chr11 35065852 35065918 -115717635 + L1PA16 LINE L1 6092 6157 -9 23 0 0 0 chr11 35065918 35065941 -115717612 + AT_rich Low_complexity Low_complexity 1 23 0 294 164 0 0 chr11 35066995 35067050 -115716503 + CT-rich Low_complexity Low_complexity 1 55 0 2373 92 0 3 chr11 35067050 35067355 -115716198 - AluSc SINE Alu -5 304 1 600 302 13 2 chr11 35067362 35067582 -115715971 - L1MC4a LINE L1 -302 5819 5623 225 213 288 12 chr11 35068136 35068216 -115715337 - MIR SINE MIR -67 195 94 743 273 40 114 chr11 35069266 35069404 -115714149 + MLT1K LTR MaLR 168 315 -273 2358 102 0 13 chr11 35069404 35069719 -115713834 + AluSx SINE Alu 1 311 -1 743 273 40 114 chr11 35069719 35070035 -115713518 + MLT1K LTR MaLR 315 588 0 2234 112 3 0 chr11 35071519 35071814 -115711739 + AluSg SINE Alu 1 296 -14 403 259 166 34 chr11 35072208 35072413 -115711140 + L1MEd LINE L1 996 1227 -4892 289 325 38 14 chr11 35072499 35072711 -115710842 + HAL1 LINE L1 1423 1639 -868 1628 135 30 61 chr11 35073386 35073682 -115709871 - AluJb SINE Alu -14 298 12 4388 187 51 31 chr11 35074503 35075349 -115708204 - MER21B LTR ERV1 0 863 1 218 89 44 0 chr11 35075436 35075481 -115708072 + (TTAAA)n Simple_repeat Simple_repeat 4 50 0 2215 111 3 0 chr11 35075494 35075791 -115707762 + AluSx SINE Alu 1 298 -14 201 108 0 0 chr11 35076073 35076110 -115707443 + (TTTTTG)n Simple_repeat Simple_repeat 2 38 0 279 0 0 0 chr11 35076528 35076559 -115706994 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1377 176 70 37 chr11 35076561 35076834 -115706719 - AluJb SINE Alu -30 282 1 344 243 0 0 chr11 35077443 35077513 -115706040 + LTR33 LTR ERVL 5 74 -447 2627 118 74 7 chr11 35077515 35077946 -115705607 - L1MA8 LINE L1 -1 6290 5831 237 327 148 0 chr11 35079066 35079167 -115704386 - L2 LINE L2 -8 3305 3190 299 298 165 13 chr11 35079225 35079383 -115704170 - MIR3 SINE MIR -24 184 3 482 298 8 27 chr11 35080093 35080384 -115703169 + GA-rich Low_complexity Low_complexity 1 285 0 474 311 3 22 chr11 35080397 35080715 -115702838 + GA-rich Low_complexity Low_complexity 1 311 0 257 334 67 13 chr11 35080766 35080930 -115702623 - MIR SINE MIR -63 145 8 249 327 79 10 chr11 35080974 35081075 -115702478 - MIR SINE MIR -74 188 81 24 67 0 0 chr11 35082112 35082157 -115701396 + AT_rich Low_complexity Low_complexity 1 45 0 1716 180 7 3 chr11 35082591 35082880 -115700673 + AluJo SINE Alu 5 294 -18 449 145 60 12 chr11 35083096 35083179 -115700374 - MER3 DNA MER1_type -122 87 1 1972 125 21 4 chr11 35083260 35083565 -115699988 - AluSx SINE Alu 0 310 1 2434 32 4 4 chr11 35084179 35084495 -115699058 - AluY SINE Alu 0 316 1 2110 105 25 0 chr11 35084651 35084964 -115698589 + AluSx SINE Alu 1 320 0 3205 123 8 29 chr11 35085039 35085088 -115698465 - Tigger1 DNA MER2_type -789 1629 1580 2118 139 0 0 chr11 35085088 35085390 -115698163 - AluSx SINE Alu -10 302 1 3205 123 8 29 chr11 35085390 35085850 -115697703 - Tigger1 DNA MER2_type -838 1580 1131 1080 300 68 62 chr11 35085848 35086315 -115697238 + MER115 DNA AcHobo 224 693 0 * 2179 78 4 4 chr11 35086915 35087226 -115696327 - AluY SINE Alu 0 311 1 378 271 25 17 chr11 35087310 35087414 -115696139 + MIR SINE MIR 21 128 -134 1574 167 3 65 chr11 35087414 35087737 -115695816 - AluJo SINE Alu -9 303 1 378 271 25 17 chr11 35087737 35087750 -115695803 + MIR SINE MIR 128 139 -123 261 273 101 30 chr11 35088149 35088248 -115695305 + MIR SINE MIR 154 259 -3 210 213 50 12 chr11 35088249 35088329 -115695224 + (TA)n Simple_repeat Simple_repeat 1 83 0 21 0 0 0 chr11 35088450 35088471 -115695082 + AT_rich Low_complexity Low_complexity 1 21 0 333 296 105 40 chr11 35088632 35088879 -115694674 - MLT1K LTR MaLR 0 588 326 191 212 0 0 chr11 35089175 35089208 -115694345 + MIR SINE MIR 82 114 -94 2116 131 3 3 chr11 35089262 35089574 -115693979 + AluSx SINE Alu 1 312 0 1945 150 3 0 chr11 35090142 35090436 -115693117 - AluSx SINE Alu -17 295 1 15713 191 13 15 chr11 35090500 35097098 -115686455 + L1PB1 LINE L1 6 6866 -1 416 222 17 26 chr11 35097226 35097343 -115686210 + MIR SINE MIR 121 236 -26 642 336 72 43 chr11 35097483 35097902 -115685651 + MLT1K LTR MaLR 49 479 -109 1027 262 45 47 chr11 35098054 35098608 -115684945 + L1ME3A LINE L1 3873 4425 -1721 55 43 0 11 chr11 35098648 35098664 -115684889 + AT_rich Low_complexity Low_complexity 1 16 -77 2072 109 3 55 chr11 35098664 35098976 -115684577 + AluSx SINE Alu 1 296 -16 55 43 0 11 chr11 35098976 35099053 -115684500 + AT_rich Low_complexity Low_complexity 16 93 0 761 269 35 29 chr11 35099142 35099488 -115684065 + L1ME3A LINE L1 4612 4959 -1187 * 957 243 93 82 chr11 35099468 35099592 -115683961 + L1ME3A LINE L1 5354 5475 -695 3863 53 0 24 chr11 35099592 35100059 -115683494 + L1PA5 LINE L1 5695 6150 -4 957 243 93 82 chr11 35100059 35100152 -115683401 + L1ME3A LINE L1 5475 5566 -604 2430 50 3 26 chr11 35100152 35100455 -115683098 + AluY SINE Alu 1 296 -15 957 243 93 82 chr11 35100455 35100845 -115682708 + L1ME3A LINE L1 5566 5937 -233 828 221 14 60 chr11 35101033 35101175 -115682378 + MER3 DNA MER1_type 3 133 -76 2415 85 0 0 chr11 35101175 35101469 -115682084 + AluSx SINE Alu 1 294 -18 828 221 14 60 chr11 35101469 35101543 -115682010 + MER3 DNA MER1_type 133 209 0 229 241 0 19 chr11 35101552 35101606 -115681947 - LTR33 LTR ERVL 0 521 469 858 282 110 36 chr11 35101648 35102095 -115681458 - LTR33 LTR ERVL -41 480 1 405 150 30 10 chr11 35102175 35102275 -115681278 + GA-rich Low_complexity Low_complexity 3 104 0 2411 62 3 0 chr11 35102459 35102751 -115680802 - AluY SINE Alu -16 295 3 273 123 158 0 chr11 35103367 35103433 -115680120 - MLT1J2 LTR MaLR -312 138 72 261 125 25 0 chr11 35103408 35103448 -115680105 - LTR67 LTR ERVL -418 139 99 * 660 203 167 36 chr11 35104065 35104287 -115679266 + MIR SINE MIR 6 256 -6 749 319 125 16 chr11 35104369 35104711 -115678842 - L1ME4a LINE L1 0 6121 5705 233 29 29 0 chr11 35104711 35104745 -115678808 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 749 319 125 16 chr11 35104745 35104907 -115678646 - L1ME4a LINE L1 -416 5705 5562 220 336 127 15 chr11 35105256 35105390 -115678163 - L2 LINE L2 -2 3270 3122 512 277 163 26 chr11 35105527 35105707 -115677846 - L1ME4a LINE L1 0 6121 5967 1827 127 94 0 chr11 35105707 35105983 -115677570 + AluSx SINE Alu 1 302 -10 512 277 163 26 chr11 35105983 35106231 -115677322 - L1ME4a LINE L1 -154 5967 5634 333 320 58 82 chr11 35106380 35106795 -115676758 + L1M2a LINE L1 4 408 -6760 454 228 22 0 chr11 35106798 35106890 -115676663 + L1M2a LINE L1 1888 1981 -5187 1378 136 14 9 chr11 35106891 35107111 -115676442 - Tigger1 DNA MER2_type -4 2414 2194 * 7130 130 11 37 chr11 35107109 35107168 -115676385 - Tigger1 DNA MER2_type -982 1436 1377 2163 124 3 0 chr11 35107168 35107467 -115676086 + AluSp SINE Alu 1 300 -13 7130 130 11 37 chr11 35107467 35108277 -115675276 - Tigger1 DNA MER2_type -1041 1377 602 2203 117 7 0 chr11 35108277 35108575 -115674978 + AluSx SINE Alu 6 305 -7 7130 130 11 37 chr11 35108575 35108869 -115674684 - Tigger1 DNA MER2_type -1816 602 302 1272 132 11 0 chr11 35108869 35109058 -115674495 + AluSx SINE Alu 9 199 -113 1317 236 4 0 chr11 35109065 35109341 -115674212 + L1M2a LINE L1 2715 2991 -4177 1628 61 37 9 chr11 35109346 35109560 -115673993 - Tigger1 DNA MER2_type -1157 1261 1042 4813 220 59 56 chr11 35109562 35109676 -115673877 + L1M1 LINE L1 3069 3181 -4384 1875 180 0 0 chr11 35109676 35109971 -115673582 + AluSx SINE Alu 1 295 -17 4813 220 59 56 chr11 35109971 35110509 -115673044 + L1M1 LINE L1 3181 3716 -3849 317 24 24 0 chr11 35110509 35110551 -115673002 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 4813 220 59 56 chr11 35110551 35111727 -115671826 + L1M1 LINE L1 3716 4989 -2576 3255 33 3 3 chr11 35111752 35112120 -115671433 + L1PA7 LINE L1 5783 6150 -4 298 47 47 47 chr11 35112123 35112209 -115671344 + (TAAAAA)n Simple_repeat Simple_repeat 3 88 0 592 177 26 0 chr11 35112238 35112351 -115671202 + L1MC3 LINE L1 7670 7785 0 2068 124 3 16 chr11 35112448 35112762 -115670791 - AluSx SINE Alu -2 310 1 2491 80 3 0 chr11 35113046 35113357 -115670196 - AluSp SINE Alu -1 312 1 2337 77 0 22 chr11 35113380 35113693 -115669860 + AluY SINE Alu 1 306 -5 2199 130 0 0 chr11 35113946 35114246 -115669307 + AluSx SINE Alu 1 300 -12 368 318 63 67 chr11 35115102 35115357 -115668196 - L2 LINE L2 0 3272 3019 1995 140 7 0 chr11 35115380 35115680 -115667873 + AluSx SINE Alu 1 302 -10 2188 82 3 31 chr11 35115791 35116107 -115667446 + AluSp SINE Alu 1 308 0 8556 176 18 6 chr11 35116227 35118224 -115665329 - L1PB1 LINE L1 -546 5605 3581 4043 89 9 2 chr11 35118224 35118751 -115664802 + L1PB1 LINE L1 5616 6146 -5 2502 93 0 0 chr11 35118754 35119065 -115664488 - AluSx SINE Alu -1 311 1 234 0 0 0 chr11 35119289 35119315 -115664238 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 241 338 27 61 chr11 35119572 35119609 -115663944 + MER5B DNA MER1_type 4 41 -137 1745 166 10 14 chr11 35119609 35119905 -115663648 - AluJo SINE Alu -17 295 1 241 338 27 61 chr11 35119905 35120015 -115663538 + MER5B DNA MER1_type 41 146 -32 1807 125 3 56 chr11 35120248 35120542 -115663011 + AluSx SINE Alu 1 280 -32 369 0 0 0 chr11 35120542 35120583 -115662970 + (CA)n Simple_repeat Simple_repeat 2 42 0 580 92 13 0 chr11 35120720 35120796 -115662757 + MADE1 DNA Mariner 1 77 -3 1735 61 0 0 chr11 35120800 35121013 -115662540 - AluY SINE Alu -8 303 91 202 136 0 91 chr11 35121241 35121285 -115662268 - L3b LINE CR1 -356 1227 1188 267 103 0 0 chr11 35121460 35121499 -115662054 + (T)n Simple_repeat Simple_repeat 1 39 0 2491 87 3 0 chr11 35122757 35123068 -115660485 + AluSp SINE Alu 1 312 -1 990 174 28 47 chr11 35123530 35123592 -115659961 - MER3 DNA MER1_type 0 209 147 1532 161 8 4 chr11 35123592 35123835 -115659718 + AluJb SINE Alu 44 287 -25 990 174 28 47 chr11 35123835 35123985 -115659568 - MER3 DNA MER1_type -62 147 1 1994 144 7 0 chr11 35124133 35124418 -115659135 + AluSx SINE Alu 1 287 -25 613 211 19 32 chr11 35124610 35124766 -115658787 - L2 LINE L2 0 3313 3160 396 0 0 0 chr11 35125542 35125586 -115657967 + (TA)n Simple_repeat Simple_repeat 2 45 0 985 211 53 51 chr11 35125830 35126185 -115657368 - L1MC5 LINE L1 -228 7733 7378 196 122 61 0 chr11 35127846 35127895 -115655658 + C-rich Low_complexity Low_complexity 3 54 0 755 230 64 39 chr11 35130557 35130761 -115652792 - MIR SINE MIR -21 241 33 206 143 0 24 chr11 35131595 35131637 -115651916 + (CCCCCA)n Simple_repeat Simple_repeat 5 45 0 859 121 0 71 chr11 35131637 35131777 -115651776 - FLAM_C SINE Alu -13 130 1 212 245 0 19 chr11 35132708 35132761 -115650792 + CT-rich Low_complexity Low_complexity 1 52 0 180 333 29 14 chr11 35132951 35133020 -115650533 + MIR SINE MIR 7 76 -186 2006 151 3 22 chr11 35133020 35133338 -115650215 - AluJo SINE Alu 0 312 1 640 236 86 6 chr11 35133343 35133517 -115650036 + MIR SINE MIR 62 249 -13 554 284 118 31 chr11 35133522 35133776 -115649777 - L2 LINE L2 -4 3309 3034 248 356 176 19 chr11 35134246 35134451 -115649102 + L2 LINE L2 3030 3266 -6 316 310 116 8 chr11 35135947 35136076 -115647477 + MIR SINE MIR 2 144 -118 330 248 77 34 chr11 35136143 35136260 -115647293 + MIR SINE MIR 9 130 -132 434 206 12 2 chr11 35136271 35136430 -115647123 - MER20 DNA MER1_type -17 202 3 365 293 20 0 chr11 35136433 35136532 -115647021 + MIR SINE MIR 132 232 -30 201 364 68 0 chr11 35137351 35137439 -115646114 - MIR SINE MIR -52 210 117 282 272 65 0 chr11 35137593 35137685 -115645868 - L2 LINE L2 -343 2970 2873 2239 138 0 0 chr11 35138646 35138958 -115644595 - AluSx SINE Alu 0 312 1 375 297 63 0 chr11 35139346 35139457 -115644096 + MIR3 SINE MIR 85 202 -6 409 198 49 12 chr11 35140634 35140715 -115642838 - L2 LINE L2 -1 3312 3229 829 210 349 40 chr11 35140794 35141275 -115642278 - L2 LINE L2 -338 2976 2347 1868 164 0 17 chr11 35141314 35141612 -115641941 + AluJb SINE Alu 1 293 -19 290 247 21 10 chr11 35142177 35142274 -115641279 + MIR SINE MIR 81 178 -84 424 302 53 41 chr11 35142276 35142338 -115641215 - MER5B DNA MER1_type 0 178 118 2091 126 3 0 chr11 35142338 35142631 -115640922 + AluSx SINE Alu 1 294 -18 186 118 0 0 chr11 35142631 35142665 -115640888 + (TG)n Simple_repeat Simple_repeat 2 35 0 424 302 53 41 chr11 35142665 35142770 -115640783 - MER5B DNA MER1_type -59 119 8 1135 118 0 0 chr11 35142974 35143194 -115640359 + AluSg/x SINE Alu 133 352 0 536 256 108 8 chr11 35143235 35143393 -115640160 - MIR SINE MIR -63 145 10 391 291 171 11 chr11 35143449 35143624 -115639929 - MIR SINE MIR -18 244 42 965 176 31 10 chr11 35144430 35144623 -115638930 - MER3 DNA MER1_type 0 209 13 531 279 58 32 chr11 35144822 35145012 -115638541 + MIR SINE MIR 63 257 -5 575 304 22 16 chr11 35145601 35145785 -115637768 + MIR SINE MIR 51 235 -27 222 208 0 38 chr11 35145988 35146041 -115637512 + CT-rich Low_complexity Low_complexity 3 53 0 216 0 0 0 chr11 35146044 35146068 -115637485 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 626 208 8 0 chr11 35146876 35147001 -115636552 + FLAM_C SINE Alu 3 128 -15 194 315 54 22 chr11 35147001 35147093 -115636460 + MIR SINE MIR 163 257 -5 211 339 16 0 chr11 35147330 35147392 -115636161 + MER5A DNA MER1_type 71 133 -56 1948 134 16 36 chr11 35147392 35147697 -115635856 - AluSx SINE Alu -13 299 1 2242 135 0 0 chr11 35147709 35148013 -115635540 - AluSx SINE Alu -8 304 1 752 291 8 30 chr11 35148347 35148581 -115634972 - MIR SINE MIR -13 249 21 749 267 100 17 chr11 35149037 35149277 -115634276 + MIR SINE MIR 2 261 -1 1668 194 0 7 chr11 35149439 35149722 -115633831 - AluJo SINE Alu 0 312 32 309 292 117 32 chr11 35149724 35149878 -115633675 + MIR SINE MIR 60 226 -36 2169 128 6 13 chr11 35152325 35152638 -115630915 - AluSx SINE Alu -1 311 1 200 83 0 28 chr11 35152669 35152705 -115630848 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 598 251 36 26 chr11 35152747 35152942 -115630611 - L1ME3 LINE L1 -39 6123 5927 330 324 81 14 chr11 35152948 35153096 -115630457 + MIR SINE MIR 92 249 -13 329 328 152 37 chr11 35153897 35154141 -115629412 - L2 LINE L2 -13 3259 2988 634 300 19 20 chr11 35155623 35155857 -115627696 - MIR SINE MIR -1 261 30 240 293 131 0 chr11 35155923 35156022 -115627531 - MIR SINE MIR -77 131 20 435 287 87 68 chr11 35156276 35156597 -115626956 - MLT1K LTR MaLR -69 519 193 665 301 31 27 chr11 35157525 35157781 -115625772 - MIR SINE MIR 0 262 6 874 235 43 55 chr11 35158792 35159016 -115624537 - L1MDa LINE L1 -3745 2795 2570 2127 123 7 23 chr11 35159016 35159324 -115624229 - AluSx SINE Alu -9 303 1 874 235 43 55 chr11 35159324 35159466 -115624087 - L1MDa LINE L1 -3970 2570 2428 1980 157 0 23 chr11 35159466 35159771 -115623782 - AluSx SINE Alu -14 298 1 874 235 43 55 chr11 35159771 35159959 -115623594 - L1MDa LINE L1 -4112 2428 2238 2036 142 7 0 chr11 35160087 35160443 -115623110 - AluSx SINE Alu 0 312 1 730 242 96 15 chr11 35160525 35160723 -115622830 - MIR SINE MIR 0 262 49 640 165 0 10 chr11 35161013 35161110 -115622443 + AluJb SINE Alu 3 98 -214 213 340 96 13 chr11 35161140 35161296 -115622257 - MIR3 SINE MIR -23 185 17 273 190 35 17 chr11 35161842 35161900 -115621653 + MIR SINE MIR 149 207 -55 2258 118 13 0 chr11 35161901 35162205 -115621348 + AluSq SINE Alu 1 308 -5 434 295 199 25 chr11 35162297 35162663 -115620890 - L2 LINE L2 -1 3312 2883 422 221 83 39 chr11 35162694 35162898 -115620655 - L1MC5 LINE L1 -44 7917 7705 2345 92 10 0 chr11 35162905 35163200 -115620353 + AluSx SINE Alu 1 298 -14 1035 167 5 42 chr11 35163221 35163413 -115620140 + AluJb SINE Alu 89 273 -39 321 315 132 49 chr11 35163440 35163484 -115620069 - L1MC5 LINE L1 -233 7809 7770 1828 145 14 0 chr11 35163484 35163790 -115619763 - AluSx SINE Alu 0 312 26 321 315 132 49 chr11 35163790 35163909 -115619644 - L1MC5 LINE L1 -272 7770 7526 1001 273 126 23 chr11 35164089 35164612 -115618941 + MLT1L LTR MaLR 39 615 0 2517 81 3 0 chr11 35164904 35165211 -115618342 - AluSp SINE Alu -5 308 1 195 313 0 38 chr11 35165959 35166039 -115617514 - MIR SINE MIR 0 262 186 604 88 12 0 chr11 35166064 35166144 -115617409 + AluS SINE Alu 2 82 -231 2096 119 4 0 chr11 35166144 35166422 -115617131 + AluSx SINE Alu 1 279 -33 212 0 0 35 chr11 35166422 35166451 -115617102 + (TAAAA)n Simple_repeat Simple_repeat 5 32 0 321 214 104 59 chr11 35166461 35166587 -115616966 - MIR SINE MIR -63 145 13 342 351 13 26 chr11 35167521 35167672 -115615881 + MIR3 SINE MIR 44 192 -16 1301 181 26 79 chr11 35167674 35167842 -115615711 + L1PA16 LINE L1 5823 5965 -201 1955 142 0 24 chr11 35167842 35168137 -115615416 + AluSx SINE Alu 1 288 -24 1301 181 26 79 chr11 35168137 35168310 -115615243 + L1PA16 LINE L1 5965 6146 -20 1636 197 42 3 chr11 35168332 35168621 -115614932 - AluJb SINE Alu -12 300 1 194 359 113 9 chr11 35170122 35170228 -115613325 + L3 LINE CR1 1445 1561 -16 987 195 17 0 chr11 35171222 35171396 -115612157 + MER45A DNA AcHobo 1 177 -1 279 335 45 17 chr11 35171442 35171618 -115611935 + MIR SINE MIR 64 244 -18 432 232 32 48 chr11 35171653 35171778 -115611775 - L2 LINE L2 -1 3312 3190 328 229 168 46 chr11 35172285 35172416 -115611137 - MIR SINE MIR 0 262 116 350 242 63 42 chr11 35173121 35173216 -115610337 + MIR SINE MIR 19 115 -147 933 215 0 0 chr11 35173232 35173404 -115610149 + AluJb SINE Alu 122 293 -19 2454 96 0 0 chr11 35173941 35174253 -115609300 - AluSx SINE Alu 0 312 1 200 211 0 0 chr11 35175886 35175924 -115607629 - L2 LINE L2 -1063 2251 2214 1344 174 204 18 chr11 35176115 35176551 -115607002 - MER69 DNA AcHobo 0 2526 2010 * 1557 247 141 10 chr11 35176549 35177051 -115606502 - MER69 DNA AcHobo -1958 568 1 2335 109 10 3 chr11 35177213 35177524 -115606029 - AluSq SINE Alu 0 313 1 758 231 23 17 chr11 35177882 35178055 -115605498 - MIR SINE MIR 0 262 89 2501 65 3 0 chr11 35178116 35178410 -115605143 + AluSg SINE Alu 1 295 -15 264 59 0 0 chr11 35179095 35179129 -115604424 + (T)n Simple_repeat Simple_repeat 1 34 0 1066 144 0 17 chr11 35179355 35179535 -115604018 - FRAM SINE Alu 0 176 1 2251 101 3 0 chr11 35179567 35179875 -115603678 + AluSx SINE Alu 3 311 -1 527 212 257 12 chr11 35180172 35180413 -115603140 + L1MC4 LINE L1 7741 8040 -2 366 271 75 0 chr11 35181289 35181396 -115602157 + MIR SINE MIR 14 128 -134 189 147 0 0 chr11 35181396 35181430 -115602123 + (TCCCC)n Simple_repeat Simple_repeat 3 36 0 645 179 9 0 chr11 35181466 35181572 -115601981 - AluJb SINE Alu -204 108 2 405 241 107 0 chr11 35181572 35181684 -115601869 + MIR SINE MIR 111 234 -28 767 176 0 8 chr11 35181702 35181833 -115601720 + FLAM_C SINE Alu 2 131 -2 490 206 43 0 chr11 35181857 35181949 -115601604 - Tigger7 DNA MER2_type -10 2481 2386 * 1189 188 5 5 chr11 35181948 35182156 -115601397 - Tigger7 DNA MER2_type -497 236 29 2258 105 0 0 chr11 35182169 35182475 -115601078 + AluSx SINE Alu 1 306 -6 656 247 133 46 chr11 35183788 35184112 -115599441 + L1ME4a LINE L1 5759 6110 -11 1617 172 3 14 chr11 35184113 35184410 -115599143 - AluJb SINE Alu -18 294 1 727 260 34 15 chr11 35186088 35186292 -115597261 - MIR SINE MIR -20 242 35 1854 144 3 0 chr11 35187350 35187635 -115595918 + AluSx SINE Alu 1 286 -26 36 62 0 0 chr11 35187635 35187699 -115595854 + AT_rich Low_complexity Low_complexity 1 64 0 248 235 86 37 chr11 35187874 35187955 -115595598 + MIR SINE MIR 34 118 -90 1173 179 40 134 chr11 35187955 35188317 -115595236 - MLT1A1 LTR MaLR 0 365 43 2017 95 91 0 chr11 35188317 35188602 -115594951 - AluSp SINE Alu -2 311 1 1173 179 40 134 chr11 35188602 35188642 -115594911 - MLT1A1 LTR MaLR -322 43 1 262 276 69 11 chr11 35188896 35188983 -115594570 - L2 LINE L2 -6 3307 3216 1599 284 181 18 chr11 35189195 35189958 -115593595 + L2 LINE L2 328 1214 -2100 914 200 0 0 chr11 35189958 35190128 -115593425 - FRAM SINE Alu -8 168 1 1669 182 16 13 chr11 35190176 35190489 -115593064 + MLT1A1 LTR MaLR 52 365 0 991 297 137 41 chr11 35190492 35190909 -115592644 + L2 LINE L2 1222 1728 -1586 1574 159 9 60 chr11 35190909 35191098 -115592455 - AluJo SINE Alu -12 300 132 2053 92 14 14 chr11 35191098 35191393 -115592160 + AluSg SINE Alu 1 295 -15 1574 159 9 60 chr11 35191393 35191518 -115592035 - AluJo SINE Alu -180 132 2 991 297 137 41 chr11 35191518 35191763 -115591790 + L2 LINE L2 1728 1948 -1366 1360 178 68 14 chr11 35191765 35192046 -115591507 - AluJb SINE Alu -2 300 5 478 168 20 10 chr11 35192067 35192168 -115591385 - L1MC4 LINE L1 -2 8040 7939 1582 106 0 5 chr11 35192168 35192385 -115591168 + AluSg/x SINE Alu 81 296 -14 1105 279 181 29 chr11 35192485 35193596 -115589957 + L2 LINE L2 1959 3312 -1 32 0 0 0 chr11 35194277 35194309 -115589244 + AT_rich Low_complexity Low_complexity 1 32 0 2266 95 0 0 chr11 35194316 35194620 -115588933 + AluSq SINE Alu 1 304 -9 816 153 0 14 chr11 35195408 35195552 -115588001 - FLAM_C SINE Alu 0 143 2 670 258 101 15 chr11 35196528 35196726 -115586827 + MIR SINE MIR 26 240 -22 22 0 0 0 chr11 35197968 35197990 -115585563 + AT_rich Low_complexity Low_complexity 1 22 0 182 330 68 10 chr11 35198262 35198365 -115585188 - L2 LINE L2 -171 3142 3034 1278 168 134 0 chr11 35198560 35198822 -115584731 - AluSx SINE Alu -15 297 1 1048 205 30 76 chr11 35198854 35198911 -115584642 - L1ME1 LINE L1 -17 6149 6091 916 115 0 43 chr11 35198911 35199050 -115584503 - FLAM_C SINE Alu 0 133 1 1048 205 30 76 chr11 35199050 35199294 -115584259 - L1ME1 LINE L1 -75 6091 5862 2213 102 0 0 chr11 35199519 35199823 -115583730 + AluSx SINE Alu 1 304 -8 918 178 0 61 chr11 35199851 35200065 -115583488 - AluJo SINE Alu -92 220 20 32 26 0 0 chr11 35201362 35201401 -115582152 + AT_rich Low_complexity Low_complexity 1 39 0 566 200 173 13 chr11 35201962 35202112 -115581441 + MER5A DNA MER1_type 9 182 -7 2116 125 0 0 chr11 35202596 35202891 -115580662 + AluSx SINE Alu 1 295 -17 2281 65 0 32 chr11 35202894 35203202 -115580351 + AluY SINE Alu 1 298 -13 2152 117 0 16 chr11 35203280 35203597 -115579956 + AluSx SINE Alu 1 312 0 226 287 30 30 chr11 35203655 35203822 -115579731 - L1ME4a LINE L1 -178 5943 5777 1148 172 22 37 chr11 35203827 35204137 -115579416 + MLT1A1 LTR MaLR 5 365 0 620 232 70 81 chr11 35205217 35205476 -115578077 + MIR SINE MIR 7 262 0 577 244 62 12 chr11 35205881 35206041 -115577512 + MIR SINE MIR 48 215 -47 1906 126 61 3 chr11 35206041 35206334 -115577219 + AluSx SINE Alu 1 310 -2 495 233 120 13 chr11 35206551 35206701 -115576852 + MIR SINE MIR 23 188 -74 763 150 8 24 chr11 35206713 35206840 -115576713 + FLAM_C SINE Alu 3 127 -16 587 253 7 7 chr11 35207655 35207801 -115575752 - MER103 DNA DNA -1 165 20 27 62 0 0 chr11 35207893 35207941 -115575612 + AT_rich Low_complexity Low_complexity 1 48 0 2169 110 7 0 chr11 35208009 35208317 -115575236 + AluSq SINE Alu 1 310 -3 1891 111 55 0 chr11 35208321 35208610 -115574943 - AluSx SINE Alu -7 305 1 1990 130 0 0 chr11 35208910 35209195 -115574358 + AluSx SINE Alu 1 285 -27 180 0 0 0 chr11 35211531 35211551 -115572002 + (TG)n Simple_repeat Simple_repeat 2 21 0 439 283 91 32 chr11 35211696 35211915 -115571638 + MIR SINE MIR 3 234 -28 2867 6 0 0 chr11 35211923 35212241 -115571312 - AluYb8 SINE Alu 0 318 1 32 26 0 0 chr11 35212980 35213019 -115570534 + AT_rich Low_complexity Low_complexity 1 39 0 948 280 25 0 chr11 35213019 35213262 -115570291 - MIR SINE MIR 0 262 14 2464 69 0 0 chr11 35213380 35213686 -115569867 - AluY SINE Alu -5 306 1 470 242 0 87 chr11 35213701 35213850 -115569703 + L1MD2 LINE L1 6210 6345 -14 679 232 12 18 chr11 35213867 35214031 -115569522 - MIR SINE MIR -4 258 96 441 0 0 0 chr11 35214328 35214377 -115569176 + (TATG)n Simple_repeat Simple_repeat 2 50 0 1778 148 22 0 chr11 35214377 35214655 -115568898 - AluJo SINE Alu -28 284 1 342 161 18 0 chr11 35215320 35215376 -115568177 + Charlie8 DNA MER1_type 196 252 -2165 2267 98 0 0 chr11 35215472 35215777 -115567776 + AluSx SINE Alu 1 305 -7 342 277 151 24 chr11 35216084 35216250 -115567303 + MIR SINE MIR 35 221 -41 1245 247 102 0 chr11 35216329 35216633 -115566920 + MER58B DNA MER1_type 1 335 -6 1137 194 47 114 chr11 35217093 35217496 -115566057 + MLT1B LTR MaLR 9 384 -6 399 298 70 0 chr11 35217550 35217664 -115565889 - MIR SINE MIR -107 155 34 1610 148 0 43 chr11 35217868 35218172 -115565381 + AluJb SINE Alu 1 291 -21 373 277 78 43 chr11 35219618 35219727 -115563826 - MIR3 SINE MIR -12 196 79 1785 179 0 6 chr11 35219727 35220040 -115563513 + AluJo SINE Alu 1 311 -1 373 277 78 43 chr11 35220040 35220071 -115563482 - MIR3 SINE MIR -129 79 51 2212 97 0 0 chr11 35220126 35220425 -115563128 - AluSq SINE Alu -14 299 1 2313 94 10 0 chr11 35220425 35220733 -115562820 - AluSp SINE Alu -1 312 1 216 367 28 0 chr11 35221034 35221143 -115562410 - MIR SINE MIR -67 141 30 190 167 0 0 chr11 35221827 35221863 -115561690 - MIR SINE MIR -63 145 110 258 291 136 10 chr11 35223673 35223776 -115559777 + MIR SINE MIR 31 146 -116 1336 143 0 5 chr11 35224989 35225192 -115558361 - AluSg/x SINE Alu -30 280 79 467 256 43 55 chr11 35225269 35225433 -115558120 + MIR3 SINE MIR 9 170 -38 1704 165 14 14 chr11 35226003 35226288 -115557265 + AluJb SINE Alu 1 285 -27 210 254 0 18 chr11 35226981 35227036 -115556517 + (CAA)n Simple_repeat Simple_repeat 1 54 0 2138 95 37 0 chr11 35227211 35227506 -115556047 + AluSq SINE Alu 1 306 -7 425 292 167 0 chr11 35227513 35227657 -115555896 - MIR SINE MIR -12 250 83 1731 151 3 36 chr11 35228213 35228517 -115555036 + AluJo SINE Alu 1 294 -18 597 239 9 0 chr11 35228522 35228631 -115554922 - MER3 DNA MER1_type -86 123 14 1929 121 3 78 chr11 35230295 35230617 -115552936 + AluSx SINE Alu 1 298 -14 215 192 137 14 chr11 35230958 35231031 -115552522 + MIR SINE MIR 110 191 -71 619 193 90 14 chr11 35231079 35231147 -115552406 - MER3 DNA MER1_type -4 205 144 2182 109 31 7 chr11 35231147 35231441 -115552112 + AluSx SINE Alu 1 301 -11 619 193 90 14 chr11 35231441 35231517 -115552036 - MER3 DNA MER1_type -65 144 50 1962 141 20 20 chr11 35231564 35231862 -115551691 + AluJb SINE Alu 1 298 -14 428 252 39 0 chr11 35231937 35232040 -115551513 + MIR SINE MIR 138 244 -18 2333 105 0 0 chr11 35232420 35232716 -115550837 - AluSg SINE Alu -14 296 1 754 241 73 17 chr11 35235089 35235321 -115548232 + MIR SINE MIR 3 247 -15 234 344 0 0 chr11 35235696 35235760 -115547793 - L2 LINE L2 -5 3308 3245 904 168 52 0 chr11 35236303 35236458 -115547095 + FRAM SINE Alu 1 160 -16 2317 89 7 0 chr11 35236961 35237263 -115546290 - AluSp SINE Alu -9 304 1 210 37 0 0 chr11 35237660 35237687 -115545866 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1405 181 72 11 chr11 35237727 35237992 -115545561 + AluJo SINE Alu 1 281 -31 207 0 0 0 chr11 35237992 35238015 -115545538 + (T)n Simple_repeat Simple_repeat 1 23 0 413 251 12 123 chr11 35238215 35238386 -115545167 + MIR SINE MIR 108 259 -3 2148 107 30 6 chr11 35238472 35238809 -115544744 - MER47A DNA MER2_type 0 366 22 2536 93 3 0 chr11 35238965 35239277 -115544276 + AluSp SINE Alu 1 313 0 2587 81 3 0 chr11 35239484 35239792 -115543761 - AluSp SINE Alu -4 309 1 560 280 42 73 chr11 35240990 35241080 -115542473 - MIR SINE MIR 0 262 171 1851 141 0 18 chr11 35241080 35241363 -115542190 - AluJb SINE Alu -11 301 24 560 280 42 73 chr11 35241363 35241533 -115542020 - MIR SINE MIR -91 171 10 204 291 47 12 chr11 35242398 35242484 -115541069 - MIR SINE MIR -43 219 131 1092 108 7 0 chr11 35242676 35242824 -115540729 + AluSg/x SINE Alu 135 283 -27 353 303 97 19 chr11 35243205 35243360 -115540193 + MIR SINE MIR 77 243 -19 742 147 0 9 chr11 35244385 35244501 -115539052 - FLAM_C SINE Alu -17 116 2 598 246 80 27 chr11 35244850 35245037 -115538516 - MIR SINE MIR -64 198 2 2235 96 3 10 chr11 35245217 35245508 -115538045 + AluSx SINE Alu 1 289 -23 1712 131 65 24 chr11 35246483 35246774 -115536779 + AluJo SINE Alu 1 303 -9 242 326 0 0 chr11 35246988 35247037 -115536516 - L2 LINE L2 -90 3182 3134 2245 117 0 0 chr11 35247059 35247357 -115536196 + AluY SINE Alu 1 298 -13 263 287 176 9 chr11 35247379 35247487 -115536066 + MIR SINE MIR 18 143 -65 1178 249 163 15 chr11 35247589 35247999 -115535554 - L2 LINE L2 -5 3308 2838 25 0 0 0 chr11 35248015 35248040 -115535513 + AT_rich Low_complexity Low_complexity 1 25 0 693 93 19 0 chr11 35248040 35248148 -115535405 - L1MA3 LINE L1 -2 6303 6194 2183 83 17 24 chr11 35248198 35248486 -115535067 - AluSq SINE Alu -14 299 14 1117 125 18 0 chr11 35248670 35248838 -115534715 + AluSg/x SINE Alu 137 307 -5 489 204 23 68 chr11 35248909 35249041 -115534512 - MIR SINE MIR -56 206 81 470 236 164 0 chr11 35250644 35250784 -115532769 - MIR SINE MIR -14 248 86 180 175 62 150 chr11 35250858 35250938 -115532615 - L2 LINE L2 -85 3228 3156 2317 70 0 14 chr11 35250951 35251261 -115532292 + AluY SINE Alu 1 306 0 24 0 0 0 chr11 35252336 35252360 -115531193 + AT_rich Low_complexity Low_complexity 1 24 0 25 65 0 0 chr11 35252412 35252458 -115531095 + AT_rich Low_complexity Low_complexity 1 46 0 1704 139 19 85 chr11 35252462 35252778 -115530775 + AluJo SINE Alu 1 295 -17 479 178 0 0 chr11 35252778 35252851 -115530702 + AluJ/FRAM SINE Alu 219 291 -21 1476 145 104 48 chr11 35253146 35253415 -115530138 - AluJb SINE Alu -24 288 5 2237 110 0 3 chr11 35253645 35253944 -115529609 - AluSx SINE Alu -13 299 2 3561 170 144 48 chr11 35253947 35254346 -115529207 - L1MC3 LINE L1 -25 7760 7401 1507 118 0 5 chr11 35254346 35254550 -115529003 + AluSg/x SINE Alu 105 307 -3 3561 170 144 48 chr11 35254550 35255102 -115528451 - L1MC3 LINE L1 -384 7401 6718 934 155 0 0 chr11 35255102 35255244 -115528309 + FLAM_C SINE Alu 2 143 0 252 209 0 0 chr11 35255244 35255287 -115528266 - L1MC4 LINE L1 -1259 6783 6741 188 261 169 56 chr11 35255602 35255744 -115527809 - MIR SINE MIR -12 250 93 328 229 38 17 chr11 35256284 35256415 -115527138 + L1ME4a LINE L1 1206 6103 -8 2576 62 3 0 chr11 35256606 35256911 -115526642 - AluY SINE Alu -5 306 1 2266 115 3 3 chr11 35256962 35257274 -115526279 - AluSx SINE Alu 0 312 1 3487 147 42 52 chr11 35257276 35257435 -115526118 + L1MB7 LINE L1 5438 5597 -587 1921 112 29 60 chr11 35257435 35257749 -115525804 + AluSq SINE Alu 1 304 -9 2185 109 0 59 chr11 35257752 35258074 -115525479 + AluSx SINE Alu 1 303 -9 2416 103 0 3 chr11 35258077 35258389 -115525164 + AluSx SINE Alu 1 311 -1 3487 147 42 52 chr11 35258389 35258808 -115524745 + L1MB7 LINE L1 5601 6022 -162 1793 121 0 0 chr11 35258808 35259048 -115524505 - AluSg/x SINE Alu 0 310 71 1833 141 43 0 chr11 35259048 35259324 -115524229 - AluSx SINE Alu -19 293 5 3487 147 42 52 chr11 35259324 35259468 -115524085 + L1MB7 LINE L1 6020 6163 -21 200 152 0 0 chr11 35259548 35259581 -115523972 + MIR SINE MIR 81 113 -149 2036 120 16 19 chr11 35259881 35260190 -115523363 - AluSx SINE Alu -4 308 1 2452 90 3 0 chr11 35260328 35260638 -115522915 - AluSp SINE Alu -2 311 1 235 234 43 117 chr11 35261127 35261221 -115522332 - L2 LINE L2 -17 3296 3210 358 325 62 12 chr11 35261346 35261506 -115522047 - MIR SINE MIR -18 244 77 619 217 23 8 chr11 35261686 35261802 -115521751 + AluJo SINE Alu 18 138 -174 1418 172 93 11 chr11 35261802 35262081 -115521472 + AluJo SINE Alu 1 302 -10 619 217 23 8 chr11 35262081 35262093 -115521460 + AluJo SINE Alu 138 148 -164 2220 106 91 25 chr11 35263636 35264033 -115519520 + MER4B LTR ERV1 1 423 -187 2199 128 0 22 chr11 35264036 35264355 -115519198 - AluSx SINE Alu 0 312 1 2257 157 16 21 chr11 35264666 35264841 -115518712 + MLT1B LTR MaLR 3 177 -213 2227 103 0 10 chr11 35264841 35265142 -115518411 + AluSg SINE Alu 1 298 -12 2257 157 16 21 chr11 35265142 35265354 -115518199 + MLT1B LTR MaLR 177 388 -2 185 0 40 0 chr11 35265367 35265392 -115518161 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 360 259 63 118 chr11 35265401 35265748 -115517805 - MLT1L LTR MaLR -88 527 200 1518 141 18 128 chr11 35266245 35266541 -115517012 - MER7A DNA MER2_type -2692 346 104 1796 180 33 0 chr11 35266541 35266841 -115516712 - AluJo SINE Alu -2 310 1 1518 141 18 128 chr11 35266841 35266934 -115516619 - MER7A DNA MER2_type -2934 104 2 298 305 211 23 chr11 35266981 35267109 -115516444 + L2 LINE L2 3121 3272 0 3180 163 13 42 chr11 35267135 35267239 -115516314 + L1MC1 LINE L1 4788 4893 -1440 2433 85 13 0 chr11 35267239 35267544 -115516009 - AluSp SINE Alu -4 309 1 3180 163 13 42 chr11 35267544 35268351 -115515202 + L1MC1 LINE L1 4893 5664 -669 2222 128 0 0 chr11 35268351 35268655 -115514898 + AluSx SINE Alu 2 305 -7 3180 163 13 42 chr11 35268655 35268816 -115514737 + L1MC1 LINE L1 5664 5828 -505 2570 170 6 31 chr11 35268818 35269295 -115514258 - MER66B LTR ERV1 0 486 22 1233 93 23 56 chr11 35269295 35269333 -115514220 + L1MC1 LINE L1 5829 5867 -466 2398 107 0 3 chr11 35269333 35269643 -115513910 - AluSq SINE Alu -4 309 1 1233 93 23 56 chr11 35269643 35269819 -115513734 + L1MC1 LINE L1 5867 6036 -297 494 295 66 94 chr11 35269819 35270107 -115513446 + L2 LINE L2 2993 3272 0 757 263 38 14 chr11 35270326 35270535 -115513018 - MIR SINE MIR -13 249 36 995 190 0 0 chr11 35271404 35271578 -115511975 + AluJb SINE Alu 134 307 -5 369 0 0 0 chr11 35271934 35271975 -115511578 + (TG)n Simple_repeat Simple_repeat 2 42 0 2325 86 0 10 chr11 35272616 35272919 -115510634 - AluSx SINE Alu -12 300 1 572 292 12 12 chr11 35273498 35273666 -115509887 + MIR SINE MIR 23 190 -72 2269 118 0 0 chr11 35273758 35274055 -115509498 + AluSx SINE Alu 1 297 -15 2088 89 29 58 chr11 35274190 35274503 -115509050 - AluSx SINE Alu -8 304 1 1681 203 3 7 chr11 35274705 35275005 -115508548 + AluJb SINE Alu 1 299 -13 24 0 0 0 chr11 35275154 35275178 -115508375 + AT_rich Low_complexity Low_complexity 1 24 0 242 281 49 0 chr11 35275844 35275926 -115507627 - MIR3 SINE MIR -7 201 116 266 217 0 29 chr11 35276199 35276268 -115507285 + C-rich Low_complexity Low_complexity 3 69 0 565 126 0 37 chr11 35276692 35276827 -115506726 + (CCCCCA)n Simple_repeat Simple_repeat 3 132 0 1984 128 21 7 chr11 35277022 35277310 -115506243 - AluSx SINE Alu -20 292 1 434 256 111 45 chr11 35277427 35277716 -115505837 - L2 LINE L2 -650 2664 2357 181 325 97 0 chr11 35278209 35278323 -115505230 + L3b LINE CR1 1265 1389 -194 584 216 153 35 chr11 35278615 35278814 -115504739 + MIR SINE MIR 42 262 0 485 273 100 68 chr11 35279819 35279970 -115503583 + MIR SINE MIR 10 155 -107 217 0 0 0 chr11 35279970 35279994 -115503559 + (TTTTG)n Simple_repeat Simple_repeat 2 135 0 1873 109 20 76 chr11 35279994 35280296 -115503257 - AluSq SINE Alu -1 308 1 485 273 100 68 chr11 35280296 35280363 -115503190 + MIR SINE MIR 154 236 -26 839 234 39 22 chr11 35280364 35280595 -115502958 - MIR SINE MIR 0 262 28 277 323 77 8 chr11 35281189 35281319 -115502234 + L2 LINE L2 3134 3272 0 561 253 50 45 chr11 35281989 35282210 -115501343 + MER102a DNA MER1_type 104 325 -5 258 256 24 24 chr11 35282702 35282784 -115500769 - MIR SINE MIR -96 112 31 436 274 153 26 chr11 35283022 35283212 -115500341 - MIR SINE MIR -10 252 39 1053 260 121 43 chr11 35283392 35283511 -115500042 + L2 LINE L2 2569 2677 -636 1960 132 7 0 chr11 35283511 35283815 -115499738 - AluSx SINE Alu 0 306 1 1053 260 121 43 chr11 35283815 35284365 -115499188 + L2 LINE L2 2677 3278 -35 866 261 118 0 chr11 35285245 35285532 -115498021 - MER5C DNA MER1_type 0 324 4 391 377 78 0 chr11 35285538 35285705 -115497848 + MIR SINE MIR 12 191 -71 514 259 58 0 chr11 35286526 35286665 -115496888 - MIR SINE MIR -16 246 100 487 254 8 8 chr11 35286834 35286956 -115496597 + MER5B DNA MER1_type 3 124 -54 302 253 48 0 chr11 35287253 35287336 -115496217 - L2 LINE L2 0 3272 3186 1956 133 3 19 chr11 35287915 35288232 -115495321 - AluSx SINE Alu 0 312 1 305 306 149 0 chr11 35288236 35288357 -115495196 + MIR SINE MIR 117 255 -7 181 30 91 0 chr11 35289104 35289137 -115494416 + (ACTG)n Simple_repeat Simple_repeat 3 38 0 243 270 14 14 chr11 35289699 35289773 -115493780 + MER91A DNA MER1_type 1 74 -122 2331 74 0 3 chr11 35289808 35290104 -115493449 - AluY SINE Alu -16 295 1 23 0 0 0 chr11 35290164 35290187 -115493366 + AT_rich Low_complexity Low_complexity 1 23 0 561 281 54 0 chr11 35290579 35290746 -115492807 - MIR SINE MIR -13 249 74 243 233 67 17 chr11 35292643 35292703 -115490850 + MIR SINE MIR 108 170 -92 275 314 186 14 chr11 35292776 35292916 -115490637 - MIR SINE MIR -98 164 1 1740 170 0 7 chr11 35294093 35294382 -115489171 - AluJb SINE Alu -22 290 4 990 147 13 0 chr11 35295112 35295262 -115488291 - FRAM SINE Alu -15 161 10 552 238 125 0 chr11 35295339 35295507 -115488046 + MIR SINE MIR 65 253 -9 284 236 0 16 chr11 35295636 35295763 -115487790 + (CTA)n Simple_repeat Simple_repeat 1 125 0 658 187 23 202 chr11 35296011 35296157 -115487396 + MIR SINE MIR 27 109 -153 2006 125 0 4 chr11 35296157 35296438 -115487115 - AluSx SINE Alu -32 280 1 658 187 23 202 chr11 35296438 35296548 -115487005 + MIR SINE MIR 109 237 -25 1694 182 3 0 chr11 35296783 35297074 -115486479 - AluJb SINE Alu -19 293 2 200 0 100 0 chr11 35297093 35297123 -115486430 + T-rich Low_complexity Low_complexity 2 34 0 761 82 0 0 chr11 35297123 35297220 -115486333 - HY3 scRNA scRNA -3 98 2 360 345 81 0 chr11 35297341 35297489 -115486064 + MIR SINE MIR 51 210 -52 319 301 153 29 chr11 35297931 35298140 -115485413 + L2 LINE L2 3078 3312 -1 434 320 51 15 chr11 35298147 35298344 -115485209 + MIR SINE MIR 4 207 -55 207 182 0 23 chr11 35298509 35298553 -115485000 + CT-rich Low_complexity Low_complexity 4 46 0 1720 152 35 3 chr11 35298619 35298909 -115484644 + AluJo SINE Alu 14 312 0 305 300 66 2 chr11 35299257 35299389 -115484164 - MIR SINE MIR -68 140 46 1809 171 41 3 chr11 35300420 35300736 -115482817 - L1MA6 LINE L1 -2 6298 5971 438 273 87 12 chr11 35300776 35300937 -115482616 + MIR SINE MIR 77 249 -13 656 142 213 89 chr11 35302286 35302455 -115481098 + AluJb SINE Alu 87 276 -36 233 29 29 0 chr11 35302460 35302494 -115481059 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 285 310 135 15 chr11 35302625 35302825 -115480728 - L2 LINE L2 -49 3264 3041 384 254 37 67 chr11 35302892 35302993 -115480560 - MER94 DNA DNA 0 134 36 1806 159 3 3 chr11 35302993 35303289 -115480264 + AluJb SINE Alu 1 296 -16 384 254 37 67 chr11 35303289 35303321 -115480232 - MER94 DNA DNA -98 36 5 869 295 34 0 chr11 35303403 35303637 -115479916 + MIR SINE MIR 18 259 -3 246 32 0 0 chr11 35305125 35305156 -115478397 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2016 122 7 3 chr11 35305191 35305487 -115478066 + AluSc SINE Alu 1 297 -12 360 225 78 39 chr11 35305623 35305752 -115477801 + MIR SINE MIR 17 150 -58 740 298 57 16 chr11 35306370 35306618 -115476935 - MIR SINE MIR 0 262 5 220 256 61 24 chr11 35306720 35306802 -115476751 - MIR SINE MIR -81 127 43 1009 214 57 0 chr11 35306992 35307221 -115476332 + Charlie1 DNA MER1_type 1 242 -2519 635 125 7 49 chr11 35307205 35307293 -115476260 + Charlie1 DNA MER1_type 2623 2704 -57 * 2050 136 0 16 chr11 35307293 35307601 -115475952 - AluSx SINE Alu -9 303 1 635 125 7 49 chr11 35307601 35307656 -115475897 + Charlie1 DNA MER1_type 2704 2760 -1 1175 150 10 5 chr11 35308529 35308722 -115474831 + AluJb SINE Alu 1 194 -118 225 200 0 0 chr11 35308966 35309006 -115474547 - MLT1J LTR MaLR -377 134 95 979 164 0 0 chr11 35309730 35309901 -115473652 - FRAM SINE Alu -6 170 1 284 339 70 74 chr11 35309901 35310085 -115473468 - L2 LINE L2 -10 3262 3079 2268 116 0 0 chr11 35310085 35310395 -115473158 - AluSg SINE Alu 0 310 1 284 339 70 74 chr11 35310395 35310656 -115472897 - L2 LINE L2 -193 3079 2819 2070 129 70 0 chr11 35310805 35311146 -115472407 + MER47A DNA MER2_type 1 365 -1 2289 66 33 3 chr11 35312038 35312340 -115471213 - AluY SINE Alu 0 311 1 190 298 85 32 chr11 35312451 35312545 -115471008 - MIR SINE MIR -44 218 120 639 315 43 21 chr11 35313579 35313814 -115469739 - MIR SINE MIR -5 257 18 402 21 0 0 chr11 35313908 35313955 -115469598 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 225 0 0 0 chr11 35313975 35314000 -115469553 + (TA)n Simple_repeat Simple_repeat 1 25 0 2250 108 3 0 chr11 35314000 35314307 -115469246 - AluSx SINE Alu -4 308 1 189 0 0 0 chr11 35314789 35314810 -115468743 + (CTTA)n Simple_repeat Simple_repeat 1 21 0 1946 124 4 0 chr11 35314822 35315096 -115468457 - AluSx SINE Alu -28 284 10 338 260 78 13 chr11 35315856 35316010 -115467543 - L2 LINE L2 -91 3222 3059 968 227 61 12 chr11 35316056 35316303 -115467250 - MIR SINE MIR -3 259 1 464 260 197 45 chr11 35316806 35317029 -115466524 + MIR SINE MIR 6 262 0 376 205 86 51 chr11 35317726 35317843 -115465710 + MIR3 SINE MIR 43 163 -45 584 276 52 26 chr11 35317989 35318181 -115465372 - MIR SINE MIR -43 219 23 267 263 105 0 chr11 35319811 35319887 -115463666 + L2 LINE L2 3145 3228 -44 351 297 75 16 chr11 35320523 35320694 -115462859 - MIR3 SINE MIR -31 177 1 256 250 0 0 chr11 35321894 35321954 -115461599 - MIR SINE MIR -116 92 33 353 298 117 29 chr11 35323152 35323323 -115460230 - MIR SINE MIR -13 249 64 288 267 17 28 chr11 35325548 35325776 -115457777 + (CA)n Simple_repeat Simple_repeat 1 225 0 347 229 73 28 chr11 35327402 35327511 -115456042 + MER5A DNA MER1_type 6 119 -70 2344 68 10 0 chr11 35327969 35328264 -115455289 - AluY SINE Alu -13 298 1 735 236 70 15 chr11 35328290 35328489 -115455064 - MIR SINE MIR -6 256 47 290 302 47 0 chr11 35328515 35328644 -115454909 - L2 LINE L2 -630 2684 2550 429 144 115 22 chr11 35329425 35329564 -115453989 - Charlie5 DNA MER1_type -45 2567 2416 2299 83 3 3 chr11 35329573 35329873 -115453680 + AluSp SINE Alu 1 300 -13 264 291 32 16 chr11 35331275 35331378 -115452175 + MIR SINE MIR 79 140 -68 254 253 48 24 chr11 35332340 35332423 -115451130 + MIR SINE MIR 28 112 -150 330 293 118 60 chr11 35332451 35332753 -115450800 + L2 LINE L2 2365 2705 -609 1425 166 123 0 chr11 35332753 35333006 -115450547 + AluJb SINE Alu 1 284 -28 330 293 118 60 chr11 35333006 35333170 -115450383 + L2 LINE L2 2705 2858 -456 262 339 40 40 chr11 35333458 35333582 -115449971 - L2 LINE L2 -9 3263 3140 992 161 19 0 chr11 35336046 35336201 -115447352 + FRAM SINE Alu 1 155 -21 183 246 231 0 chr11 35337954 35338019 -115445534 - MIR SINE MIR -163 99 20 1527 176 35 18 chr11 35338080 35338364 -115445189 + AluJo SINE Alu 1 289 -23 585 246 113 20 chr11 35338462 35338657 -115444896 - MIR SINE MIR -22 240 28 205 291 101 13 chr11 35338719 35338798 -115444755 + MIR3 SINE MIR 123 208 0 21 0 0 0 chr11 35338859 35338880 -115444673 + AT_rich Low_complexity Low_complexity 1 21 0 319 281 99 16 chr11 35340438 35340559 -115442994 - L2 LINE L2 -8 3264 3134 1545 197 94 31 chr11 35341735 35342106 -115441447 + Charlie1b DNA MER1_type 5 416 -2345 931 87 7 43 chr11 35342106 35342244 -115441309 - FLAM_C SINE Alu 0 133 1 1545 197 94 31 chr11 35342244 35342360 -115441193 + Charlie1b DNA MER1_type 416 523 0 394 306 71 38 chr11 35342370 35342553 -115441000 + MIR SINE MIR 3 191 -71 369 0 0 0 chr11 35344945 35344986 -115438567 + (TG)n Simple_repeat Simple_repeat 1 41 0 234 0 0 0 chr11 35345049 35345075 -115438478 + (TG)n Simple_repeat Simple_repeat 1 26 0 243 313 98 25 chr11 35345623 35345786 -115437767 + MIR SINE MIR 73 247 -15 216 236 0 18 chr11 35346394 35346449 -115437104 + (TA)n Simple_repeat Simple_repeat 1 54 0 1381 227 145 93 chr11 35347993 35349121 -115434432 + L2 LINE L2 1327 2513 -801 2278 121 0 0 chr11 35350015 35350312 -115433241 + AluSx SINE Alu 1 297 -15 1526 133 0 0 chr11 35350418 35350628 -115432925 - AluJb SINE Alu -13 299 90 995 201 12 0 chr11 35350793 35350962 -115432591 - MER5A DNA MER1_type 0 189 19 2314 64 0 40 chr11 35352230 35352527 -115431026 - AluY SINE Alu -26 285 1 393 248 41 0 chr11 35352673 35352794 -115430759 + L1ME4a LINE L1 5692 5817 -345 2476 91 3 0 chr11 35354414 35354723 -115428830 + AluSg SINE Alu 1 310 0 324 264 182 6 chr11 35355753 35355912 -115427641 + MIR SINE MIR 2 188 -74 2691 202 47 27 chr11 35356438 35356489 -115427064 + L1MB8 LINE L1 5148 5197 -1137 2380 109 0 3 chr11 35356489 35356800 -115426753 + AluSx SINE Alu 1 310 -2 2691 202 47 27 chr11 35356800 35357732 -115425821 + L1MB8 LINE L1 5197 6332 -2 334 319 22 44 chr11 35357939 35358015 -115425538 + L1ME4a LINE L1 5963 6036 -85 2418 94 7 0 chr11 35358015 35358323 -115425230 - AluSg SINE Alu 0 310 1 334 319 22 44 chr11 35358323 35358381 -115425172 + L1ME4a LINE L1 6036 6094 -27 29 28 0 0 chr11 35358384 35358420 -115425133 + AT_rich Low_complexity Low_complexity 1 36 0 589 244 86 19 chr11 35359077 35359308 -115424245 + MIR SINE MIR 10 256 -6 460 279 91 27 chr11 35359588 35359907 -115423646 + L1ME LINE L1 5311 5649 -513 2100 110 0 56 chr11 35360396 35360715 -115422838 - AluSx SINE Alu -11 301 1 2353 63 28 0 chr11 35362222 35362508 -115421045 - AluSp SINE Alu -19 294 1 497 261 15 31 chr11 35363093 35363223 -115420330 + MIR SINE MIR 16 143 -65 1444 238 106 75 chr11 35364090 35364204 -115419349 + L2 LINE L2 2170 2279 -1034 2395 101 0 0 chr11 35364204 35364502 -115419051 - AluSq SINE Alu -15 298 1 1444 238 106 75 chr11 35364502 35364513 -115419040 + L2 LINE L2 2279 2288 -1025 2571 82 0 0 chr11 35364513 35364817 -115418736 - AluSc SINE Alu -5 304 1 1444 238 106 75 chr11 35364817 35365767 -115417786 + L2 LINE L2 2288 3271 -42 371 258 64 71 chr11 35366177 35366255 -115417298 + L1MC/D LINE L1 5296 5373 -2435 218 32 32 0 chr11 35366255 35366286 -115417267 + (CAA)n Simple_repeat Simple_repeat 1 32 0 371 258 64 71 chr11 35366286 35366474 -115417079 + L1MC/D LINE L1 5373 5560 -2248 249 303 117 14 chr11 35366484 35366629 -115416924 + L1MC/D LINE L1 5602 5761 -2047 859 238 0 0 chr11 35367490 35367658 -115415895 + FRAM SINE Alu 2 169 -7 1046 178 23 32 chr11 35368893 35369112 -115414441 - MER20 DNA MER1_type -2 217 1 342 237 148 22 chr11 35369190 35369325 -115414228 + MER103 DNA DNA 8 159 -7 2181 115 3 13 chr11 35369370 35369503 -115414050 + AluSx SINE Alu 4 137 -175 2180 142 0 0 chr11 35369503 35369813 -115413740 + AluSx SINE Alu 1 310 -2 2181 115 3 13 chr11 35369813 35369991 -115413562 + AluSx SINE Alu 137 312 0 250 272 88 59 chr11 35370228 35370364 -115413189 - MIR3 SINE MIR -63 145 6 441 255 270 19 chr11 35370809 35371072 -115412481 - L2 LINE L2 0 3313 2985 1130 272 81 44 chr11 35371112 35371217 -115412336 - L2 LINE L2 0 3313 3213 2241 98 0 11 chr11 35371217 35371527 -115412026 - AluSx SINE Alu 0 307 1 1130 272 81 44 chr11 35371527 35371876 -115411677 - L2 LINE L2 -100 3213 2841 723 123 51 51 chr11 35372737 35372875 -115410678 - FLAM_C SINE Alu -4 139 2 201 74 0 0 chr11 35373584 35373611 -115409942 + (CA)n Simple_repeat Simple_repeat 2 28 0 188 277 99 20 chr11 35374502 35374603 -115408950 + MIR3 SINE MIR 3 111 -97 223 333 11 0 chr11 35375045 35375132 -115408421 + MIR3 SINE MIR 104 191 -17 23 0 0 0 chr11 35375655 35375678 -115407875 + AT_rich Low_complexity Low_complexity 1 23 0 285 98 0 0 chr11 35375812 35375853 -115407700 + (A)n Simple_repeat Simple_repeat 1 41 0 459 294 89 28 chr11 35377667 35377847 -115405706 - MIR3 SINE MIR -7 201 11 1114 105 0 2 chr11 35378511 35378750 -115404803 - AluSc SINE Alu -18 291 2 305 134 171 37 chr11 35378858 35378940 -115404613 + L1ME4a LINE L1 5966 6058 -63 1853 109 94 7 chr11 35379090 35379366 -115404187 + AluSx SINE Alu 2 301 -11 718 283 271 29 chr11 35381617 35382432 -115401121 - L2 LINE L2 -178 3135 2050 2427 91 3 0 chr11 35382632 35382941 -115400612 - AluSg SINE Alu 0 310 1 275 363 87 60 chr11 35383122 35383422 -115400131 + L2 LINE L2 2960 3267 -5 25 0 0 0 chr11 35385251 35385276 -115398277 + AT_rich Low_complexity Low_complexity 1 25 0 785 94 24 39 chr11 35387334 35387461 -115396092 - L2 LINE L2 0 3313 3189 1692 169 26 13 chr11 35391202 35391316 -115392237 + AluJb SINE Alu 1 112 -200 189 0 0 0 chr11 35391316 35391337 -115392216 + (CAA)n Simple_repeat Simple_repeat 1 21 0 1692 169 26 13 chr11 35391337 35391530 -115392023 + AluJb SINE Alu 112 312 0 1490 153 57 43 chr11 35391587 35391869 -115391684 - AluJo SINE Alu -26 286 1 517 83 0 0 chr11 35392042 35392114 -115391439 + AluSx SINE Alu 1 72 -241 437 89 0 156 chr11 35392119 35392209 -115391344 + AluSp/q SINE Alu 175 250 -63 356 234 0 0 chr11 35392247 35392324 -115391229 - FRAM/FAM SINE Alu -87 79 3 317 176 0 71 chr11 35392325 35392410 -115391143 + L1MA8 LINE L1 6212 6290 -1 240 317 20 30 chr11 35392434 35392535 -115391018 - L2 LINE L2 -312 3001 2902 888 112 83 65 chr11 35392537 35392706 -115390847 + AluSx SINE Alu 72 243 -67 572 174 39 65 chr11 35393053 35393208 -115390345 + FRAM SINE Alu 20 170 -6 1382 183 7 60 chr11 35393226 35393527 -115390026 + AluJo SINE Alu 1 285 -27 1933 144 0 10 chr11 35393737 35394036 -115389517 + AluSx SINE Alu 3 298 -14 2129 132 0 0 chr11 35394808 35395104 -115388449 + AluSx SINE Alu 1 296 -16 265 189 200 0 chr11 35395208 35395303 -115388250 - L1M4 LINE L1 -3115 3031 2918 22 35 0 0 chr11 35396546 35396575 -115386978 + AT_rich Low_complexity Low_complexity 1 29 0 727 180 0 43 chr11 35396771 35396910 -115386643 - FLAM_C SINE Alu 0 133 1 350 114 0 127 chr11 35397088 35397167 -115386386 - Alu SINE Alu 0 302 234 495 227 0 0 chr11 35447172 35447391 -115336162 + (CA)n Simple_repeat Simple_repeat 1 219 0 410 228 0 6 chr11 35447406 35447586 -115335967 + (CA)n Simple_repeat Simple_repeat 2 180 0 204 214 54 0 chr11 35447635 35447691 -115335862 + CT-rich Low_complexity Low_complexity 3 61 0 357 228 54 11 chr11 35447700 35447792 -115335761 + MER112 DNA MER1_type 163 258 -2 2147 119 3 10 chr11 35448202 35448514 -115335039 + AluSx SINE Alu 1 310 -2 2368 74 10 3 chr11 35448687 35448985 -115334568 + AluSx SINE Alu 1 300 -12 2273 95 7 3 chr11 35449523 35449827 -115333726 + AluSc SINE Alu 3 307 -2 2325 34 0 0 chr11 35451031 35451296 -115332257 - AluY SINE Alu -1 310 46 2117 108 7 23 chr11 35451301 35451606 -115331947 - AluSx SINE Alu -12 300 1 240 167 19 0 chr11 35452430 35452484 -115331069 + LTR66 LTR ERVL 385 439 -171 1685 111 0 53 chr11 35452667 35452929 -115330624 + AluSx SINE Alu 57 304 -8 210 300 0 44 chr11 35454038 35454128 -115329425 - MIR3 SINE MIR -15 193 108 474 276 55 40 chr11 35454140 35454343 -115329210 + MIR SINE MIR 3 203 -59 255 321 45 15 chr11 35454667 35454801 -115328752 - L2 LINE L2 -241 3031 2894 281 291 48 56 chr11 35454813 35455064 -115328489 - L2 LINE L2 -1275 2039 1791 370 293 66 18 chr11 35455250 35455417 -115328136 + MER5B DNA MER1_type 3 177 -1 702 256 93 0 chr11 35456763 35456935 -115326618 - MIR SINE MIR -72 190 3 401 257 43 14 chr11 35457074 35457214 -115326339 - MER103 DNA DNA -19 147 4 969 185 6 0 chr11 35457250 35457412 -115326141 + FRAM SINE Alu 1 163 -13 647 303 76 58 chr11 35458260 35458767 -115324786 - L1ME4a LINE L1 -260 5861 5361 220 290 32 0 chr11 35459175 35459237 -115324316 - L2 LINE L2 -1 3312 3249 650 78 0 206 chr11 35459754 35459895 -115323658 - AluSp/q SINE Alu -5 308 197 477 184 0 0 chr11 35459916 35459992 -115323561 + AluJb SINE Alu 205 280 -32 192 77 0 0 chr11 35459995 35460021 -115323532 + (CCAA)n Simple_repeat Simple_repeat 2 27 0 1349 142 5 0 chr11 35460462 35460666 -115322887 - MER2 DNA MER2_type -135 210 6 1203 181 10 5 chr11 35460957 35461161 -115322392 + MER3 DNA MER1_type 5 209 0 704 264 7 0 chr11 35461301 35461456 -115322097 + MER112 DNA MER1_type 96 251 -9 659 222 103 118 chr11 35461525 35461734 -115321819 + L2 LINE L2 2922 3124 -189 2106 127 10 3 chr11 35461734 35462034 -115321519 - AluSx SINE Alu -8 304 3 659 222 103 118 chr11 35462034 35462221 -115321332 + L2 LINE L2 3124 3312 -1 1960 194 20 45 chr11 35462447 35462843 -115320710 - MER70A LTR ERVL 0 472 87 1638 139 94 45 chr11 35462843 35463130 -115320423 - AluSx SINE Alu -11 301 1 2186 114 7 3 chr11 35463521 35463811 -115319742 + AluSx SINE Alu 1 291 -21 489 34 0 0 chr11 35463815 35463874 -115319679 + (CATA)n Simple_repeat Simple_repeat 2 60 0 1886 166 23 0 chr11 35464182 35464484 -115319069 - AluJb SINE Alu -3 309 1 546 148 0 0 chr11 35465428 35465509 -115318044 - AluJ/FLAM SINE Alu -230 82 2 182 337 54 11 chr11 35465546 35465638 -115317915 - L3b LINE CR1 -369 1214 1119 324 102 0 0 chr11 35465916 35465965 -115317588 + (TGGA)n Simple_repeat Simple_repeat 4 52 0 2427 136 95 3 chr11 35466223 35466613 -115316940 - MSTB LTR MaLR 0 426 1 194 0 39 0 chr11 35467124 35467150 -115316403 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 453 312 35 69 chr11 35467565 35467796 -115315757 - L2 LINE L2 -62 3210 2988 1526 94 80 0 chr11 35467997 35468210 -115315343 + MER30 DNA MER1_type 1 230 0 535 301 235 26 chr11 35468329 35469217 -115314336 - L2 LINE L2 -657 2657 1584 957 298 69 16 chr11 35469373 35469736 -115313817 - L2 LINE L2 -12 3301 2920 262 347 131 41 chr11 35469980 35470468 -115313085 + L2 LINE L2 2694 3231 -41 2182 110 0 16 chr11 35470789 35471106 -115312447 - AluSx SINE Alu 0 312 1 2362 100 0 0 chr11 35471123 35471422 -115312131 - AluSg SINE Alu -11 299 1 2379 77 0 0 chr11 35471697 35471982 -115311571 - AluSc SINE Alu -24 285 1 368 214 76 35 chr11 35473057 35473202 -115310351 - MIR SINE MIR -109 153 3 1798 145 26 23 chr11 35473522 35473825 -115309728 - AluJb SINE Alu -8 304 1 2142 129 0 10 chr11 35475267 35475577 -115307976 + AluSx SINE Alu 1 307 -5 2063 82 42 49 chr11 35475989 35476295 -115307258 - AluSp SINE Alu -9 304 1 259 372 115 0 chr11 35476532 35476680 -115306873 + MIR3 SINE MIR 37 201 -7 387 0 0 0 chr11 35476697 35476740 -115306813 + (TG)n Simple_repeat Simple_repeat 2 44 0 1977 142 3 0 chr11 35476741 35477029 -115306524 - AluSx SINE Alu -23 289 1 430 221 155 61 chr11 35477485 35477666 -115305887 - L1MC4 LINE L1 -15 8027 7830 21 36 0 0 chr11 35478533 35478561 -115304992 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr11 35479445 35479468 -115304085 + AT_rich Low_complexity Low_complexity 1 23 0 1644 164 38 7 chr11 35480357 35480644 -115302909 + AluJo SINE Alu 1 296 -16 1788 160 0 7 chr11 35482891 35483196 -115300357 - AluJb SINE Alu 0 308 6 1862 136 14 7 chr11 35483235 35483515 -115300038 - AluSx SINE Alu -30 282 1 1793 151 0 25 chr11 35483840 35484124 -115299429 + AluJo SINE Alu 6 282 -30 209 105 0 26 chr11 35484126 35484164 -115299389 + (GGAA)n Simple_repeat Simple_repeat 4 40 0 231 253 25 0 chr11 35484341 35484420 -115299133 + (TA)n Simple_repeat Simple_repeat 2 82 0 350 284 151 46 chr11 35486052 35486270 -115297283 + MIR SINE MIR 20 260 -2 212 263 13 26 chr11 35486270 35486346 -115297207 + (TAG)n Simple_repeat Simple_repeat 3 77 0 29 60 0 0 chr11 35489377 35489427 -115294126 + AT_rich Low_complexity Low_complexity 1 50 0 426 320 47 0 chr11 35490668 35490818 -115292735 - MIR SINE MIR -59 203 47 1413 216 129 23 chr11 35491206 35491633 -115291920 - L1ME3A LINE L1 -249 5921 5450 197 194 0 0 chr11 35491867 35491898 -115291655 + L2 LINE L2 3214 3244 -28 590 281 257 16 chr11 35491906 35492492 -115291061 - L2 LINE L2 -6 3307 2594 996 224 29 0 chr11 35492526 35492772 -115290781 - L1ME3A LINE L1 -918 5228 4976 243 278 67 93 chr11 35493189 35493332 -115290221 - L1MC4 LINE L1 0 8042 7897 2208 102 3 0 chr11 35493332 35493617 -115289936 - AluSx SINE Alu -26 286 1 243 278 67 93 chr11 35493617 35493934 -115289619 - L1MC4 LINE L1 -145 7897 7594 2306 96 0 0 chr11 35493947 35494239 -115289314 - AluSx SINE Alu -9 303 12 947 234 203 48 chr11 35494461 35494880 -115288673 - L1MC4 LINE L1 -749 7293 6810 228 350 73 8 chr11 35495475 35495598 -115287955 + L2 LINE L2 3183 3313 0 234 330 119 28 chr11 35495618 35495727 -115287826 + MIR SINE MIR 31 149 -59 379 272 138 46 chr11 35495730 35496028 -115287525 - MER102a DNA MER1_type -2 328 7 920 204 0 25 chr11 35496229 35496391 -115287162 - FRAM SINE Alu -8 158 1 2579 49 0 3 chr11 35496403 35496893 -115286660 - AluY SINE Alu 0 489 1 291 293 28 47 chr11 35497200 35497306 -115286247 - MIR SINE MIR -78 184 81 2067 99 0 25 chr11 35497311 35497595 -115285958 + AluSx SINE Alu 1 277 -35 279 54 0 0 chr11 35497595 35497632 -115285921 + (CAAAA)n Simple_repeat Simple_repeat 3 39 0 2463 203 61 85 chr11 35497723 35498003 -115285550 + MER63D DNA MER1_type 8 293 -768 420 20 0 0 chr11 35498003 35498052 -115285501 + (TATAG)n Simple_repeat Simple_repeat 2 50 0 2463 203 61 85 chr11 35498052 35498692 -115284861 + MER63D DNA MER1_type 293 906 -155 5863 173 30 9 chr11 35498698 35499750 -115283803 - Tigger6a DNA MER2_type -7 1076 3 851 176 27 0 chr11 35499756 35499904 -115283649 + MER63D DNA MER1_type 911 1062 0 618 287 24 83 chr11 35500231 35500569 -115282984 - MLT1I LTR MaLR -19 390 73 809 159 7 29 chr11 35500626 35500764 -115282789 + MER2 DNA MER2_type 1 135 -210 1629 150 11 28 chr11 35500765 35501051 -115282502 + AluJo SINE Alu 1 281 -31 486 49 0 0 chr11 35501054 35501115 -115282438 + (CATA)n Simple_repeat Simple_repeat 2 62 0 1717 148 27 40 chr11 35501161 35501345 -115282208 - AluJb SINE Alu -18 294 114 240 35 0 0 chr11 35501345 35501374 -115282179 + (TTA)n Simple_repeat Simple_repeat 2 30 0 1717 148 27 40 chr11 35501374 35501487 -115282066 - AluJb SINE Alu -198 114 1 673 196 119 26 chr11 35501488 35501682 -115281871 + MER2 DNA MER2_type 126 337 -8 320 165 44 121 chr11 35501873 35501938 -115281615 + MER5A DNA MER1_type 9 68 -121 2110 113 0 3 chr11 35501938 35502253 -115281300 + AluSx SINE Alu 1 314 0 320 165 44 121 chr11 35502253 35502277 -115281276 + MER5A DNA MER1_type 68 92 -97 195 235 0 0 chr11 35502302 35502400 -115281153 + T-rich Low_complexity Low_complexity 1 98 0 426 130 60 10 chr11 35502656 35502756 -115280797 + CT-rich Low_complexity Low_complexity 2 106 0 711 181 39 0 chr11 35503218 35503345 -115280208 - FLAM_C SINE Alu 0 133 2 1936 185 68 7 chr11 35503366 35503777 -115279776 - L1MB8 LINE L1 -101 6077 5642 181 345 18 0 chr11 35503845 35503900 -115279653 - MIR SINE MIR -164 98 43 2189 106 0 0 chr11 35504157 35504459 -115279094 - AluSx SINE Alu 0 302 1 240 336 72 0 chr11 35504738 35504863 -115278690 + L2 LINE L2 2606 2739 -575 2277 92 3 0 chr11 35505267 35505561 -115277992 - AluSx SINE Alu -17 295 1 753 305 64 17 chr11 35505993 35506229 -115277324 - MIR SINE MIR -4 258 12 2318 101 0 19 chr11 35506683 35506999 -115276554 - AluSg SINE Alu 0 310 1 258 105 0 0 chr11 35507937 35507975 -115275578 + (TCCC)n Simple_repeat Simple_repeat 3 40 0 2253 97 7 0 chr11 35507977 35508265 -115275288 - AluSx SINE Alu -22 290 1 1087 234 164 15 chr11 35508483 35508872 -115274681 + L2 LINE L2 2863 3309 -4 306 290 28 19 chr11 35508878 35508985 -115274568 + L2 LINE L2 3158 3265 -7 206 258 48 16 chr11 35509156 35509218 -115274335 + L2 LINE L2 3243 3306 -7 34 72 0 0 chr11 35509553 35509622 -115273931 + GC_rich Low_complexity Low_complexity 1 69 0 28 29 0 0 chr11 35509884 35509919 -115273634 + GC_rich Low_complexity Low_complexity 1 35 0 320 282 107 58 chr11 35509945 35510356 -115273197 - L1M2 LINE L1 -5736 1113 683 256 158 18 35 chr11 35513151 35513208 -115270345 - L2 LINE L2 0 3272 3217 788 203 6 25 chr11 35513219 35513382 -115270171 + MIR SINE MIR 93 252 -10 216 269 30 0 chr11 35513412 35513479 -115270074 - L2 LINE L2 -26 3246 3178 1814 167 17 53 chr11 35513985 35514344 -115269209 - L1P LINE L1 -3389 2757 2412 183 129 0 0 chr11 35514468 35514499 -115269054 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 516 294 156 12 chr11 35514624 35514784 -115268769 - MER5A DNA MER1_type 0 189 7 * 3272 257 101 21 chr11 35514779 35516179 -115267374 - L2 LINE L2 -128 3185 1670 386 354 16 0 chr11 35517101 35517228 -115266325 - L2 LINE L2 -4 3268 3140 489 264 108 23 chr11 35517246 35517491 -115266062 - Charlie8 DNA MER1_type -1016 1401 36 4686 192 85 34 chr11 35517532 35518892 -115264661 - L1ME1 LINE L1 -5 6161 4649 1125 201 33 9 chr11 35518892 35519106 -115264447 - MER20 DNA MER1_type 0 219 1 4686 192 85 34 chr11 35519106 35519916 -115263637 - L1ME1 LINE L1 -1517 4649 3881 2200 113 0 7 chr11 35519960 35520253 -115263300 + AluSq SINE Alu 1 291 -22 391 237 90 45 chr11 35520274 35520386 -115263167 - L1ME1 LINE L1 -2403 3743 3618 2013 145 0 0 chr11 35520386 35520700 -115262853 + AluSx SINE Alu 1 314 0 391 237 90 45 chr11 35520700 35520763 -115262790 - L1ME1 LINE L1 -2528 3618 3559 2175 139 0 0 chr11 35520864 35521167 -115262386 - AluSx SINE Alu -9 303 1 211 219 0 0 chr11 35521291 35521332 -115262221 + MIR SINE MIR 97 137 -71 27 49 0 0 chr11 35521568 35521609 -115261944 + AT_rich Low_complexity Low_complexity 1 41 0 2600 127 33 0 chr11 35521661 35522024 -115261529 - THE1C LTR MaLR 0 375 1 834 242 15 25 chr11 35523605 35523803 -115259750 - MIR SINE MIR -46 216 21 591 175 101 17 chr11 35524330 35524487 -115259066 + MER63A DNA MER1_type 40 210 0 401 300 94 49 chr11 35525509 35525732 -115257821 - MIR SINE MIR 0 262 30 393 231 92 51 chr11 35525780 35525975 -115257578 - L1MC4 LINE L1 -1 8041 7839 688 197 13 112 chr11 35526026 35526259 -115257294 - L1ME2 LINE L1 -11 6153 5944 600 153 0 0 chr11 35526342 35526427 -115257126 - AluJ/FLAM SINE Alu -227 85 1 253 304 80 0 chr11 35526527 35526639 -115256914 + L2 LINE L2 2615 2735 -579 395 277 89 68 chr11 35526746 35526981 -115256572 + L2 LINE L2 2925 3164 -108 228 290 11 43 chr11 35526988 35527081 -115256472 + Charlie1 DNA MER1_type 1 90 -2671 1539 184 37 0 chr11 35527652 35527773 -115255780 + AluJb SINE Alu 1 116 -216 183 42 0 0 chr11 35527773 35527797 -115255756 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1539 184 37 0 chr11 35527797 35527997 -115255556 + AluJb SINE Alu 116 332 0 645 264 81 25 chr11 35528022 35528219 -115255334 + MER102a DNA MER1_type 87 294 -36 930 269 110 18 chr11 35528225 35528608 -115254945 - MLT1J2 LTR MaLR -18 432 15 253 226 97 0 chr11 35528612 35528674 -115254879 + MER102a DNA MER1_type 274 341 0 540 189 126 0 chr11 35528721 35528832 -115254721 + L2 LINE L2 3189 3313 0 378 91 0 0 chr11 35529131 35529186 -115254367 - L1PB1 LINE L1 -1 6150 6096 1912 128 8 0 chr11 35530261 35530527 -115253026 + AluSx SINE Alu 31 298 -14 2149 124 0 10 chr11 35530668 35530967 -115252586 + AluSg SINE Alu 1 296 -14 2314 60 0 11 chr11 35531046 35531328 -115252225 + AluSg SINE Alu 1 279 -31 414 0 0 0 chr11 35531328 35531374 -115252179 + (CA)n Simple_repeat Simple_repeat 1 46 0 2235 105 16 0 chr11 35531535 35531839 -115251714 - AluSq SINE Alu -4 309 1 324 239 65 11 chr11 35531934 35532026 -115251527 + MER5C DNA MER1_type 28 124 -200 229 239 30 97 chr11 35532282 35532416 -115251137 - L1ME4a LINE L1 -74 6047 5923 2300 116 0 0 chr11 35532568 35532870 -115250683 - AluSx SINE Alu -10 302 1 22 35 0 0 chr11 35533680 35533709 -115249844 + AT_rich Low_complexity Low_complexity 1 29 0 652 273 29 19 chr11 35534387 35534592 -115248961 - MIR SINE MIR -21 241 35 325 114 57 21 chr11 35534805 35534945 -115248608 + (TA)n Simple_repeat Simple_repeat 1 145 0 30 45 0 0 chr11 35534965 35535009 -115248544 + AT_rich Low_complexity Low_complexity 1 44 0 1245 158 200 0 chr11 35535188 35535428 -115248125 - AluJb SINE Alu -10 292 5 274 288 174 0 chr11 35535493 35535625 -115247928 - MER102a DNA MER1_type 0 330 176 869 173 20 81 chr11 35535972 35536169 -115247384 - MER5A DNA MER1_type -2 187 3 287 278 52 21 chr11 35536343 35536440 -115247113 + MER5B DNA MER1_type 59 158 -20 495 153 0 27 chr11 35536663 35536774 -115246779 + CT-rich Low_complexity Low_complexity 2 109 0 8472 115 22 19 chr11 35537259 35537911 -115245642 + HSMAR2 DNA Mariner 1 649 -653 1864 173 0 3 chr11 35537911 35538211 -115245342 + AluJo SINE Alu 1 299 -13 8472 115 22 19 chr11 35538211 35538854 -115244699 + HSMAR2 DNA Mariner 649 1301 -1 190 304 0 71 chr11 35539245 35539357 -115244196 + MIR SINE MIR 104 207 -55 2520 202 14 34 chr11 35539897 35540462 -115243091 + L1MD3 LINE L1 7429 7982 -13 818 272 216 26 chr11 35541198 35541776 -115241777 + L2 LINE L2 1146 1833 -1481 3015 204 39 38 chr11 35541780 35542471 -115241082 - L1MB5 LINE L1 0 6174 5483 5113 59 70 13 chr11 35542471 35543137 -115240416 - L1PA6 LINE L1 -6 6148 5439 2298 107 0 0 chr11 35543137 35543437 -115240116 - AluSq SINE Alu -13 300 1 5113 59 70 13 chr11 35543437 35543465 -115240088 - L1PA6 LINE L1 -715 5439 5414 519 114 45 0 chr11 35543474 35543562 -115239991 - L1MB5 LINE L1 -798 5376 5285 835 227 160 7 chr11 35543562 35543862 -115239691 + L2 LINE L2 1821 2166 -1148 686 241 121 31 chr11 35543878 35544168 -115239385 + L2 LINE L2 2420 2735 -579 564 152 0 0 chr11 35544171 35544270 -115239283 + CT-rich Low_complexity Low_complexity 4 102 0 260 167 33 0 chr11 35544286 35544346 -115239207 + MER103 DNA DNA 83 144 -22 535 105 0 21 chr11 35544348 35544443 -115239110 + (TCCC)n Simple_repeat Simple_repeat 2 94 0 374 284 0 9 chr11 35544919 35545028 -115238525 + L2 LINE L2 3160 3267 -5 4801 109 104 140 chr11 35545028 35546474 -115237079 - pTR5 LTR ERV1 0 2438 66 357 19 0 0 chr11 35546607 35546664 -115236889 - L1P LINE L1 -844 5302 5246 6484 64 11 22 chr11 35546788 35548238 -115235315 + L1PA8A LINE L1 4680 6123 -8 2067 109 7 0 chr11 35548357 35548633 -115234920 + THE1B LTR MaLR 87 364 0 3069 56 2 47 chr11 35548679 35549087 -115234466 - HERVL LTR ERVL -2495 3159 2770 246 225 175 0 chr11 35549801 35549881 -115233672 - MIR SINE MIR -10 252 159 273 149 0 21 chr11 35549887 35549925 -115233628 - MLT2D LTR ERVL -2 412 374 630 71 0 0 chr11 35549925 35550009 -115233544 + (TA)n Simple_repeat Simple_repeat 2 85 0 1336 187 90 25 chr11 35550060 35550381 -115233172 - MER2 DNA MER2_type 0 344 3 1120 207 64 44 chr11 35550401 35550789 -115232764 - MLT2B1 LTR ERVL -40 480 1 426 273 28 14 chr11 35550789 35550932 -115232621 - MIR SINE MIR -99 163 19 294 209 11 77 chr11 35550996 35551087 -115232466 - MIR SINE MIR -94 114 30 389 296 181 10 chr11 35551623 35551822 -115231731 + MIR SINE MIR 28 260 -2 21 0 0 0 chr11 35553013 35553034 -115230519 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr11 35553087 35553107 -115230446 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1827 138 63 8 chr11 35553109 35553377 -115230176 - AluSx SINE Alu -29 283 1 915 279 99 54 chr11 35553387 35553421 -115230132 - L1MEd LINE L1 -3875 2435 2404 831 118 25 103 chr11 35553421 35553556 -115229997 - L1MA4A LINE L1 -1 6302 6187 2297 67 22 29 chr11 35553556 35553869 -115229684 - AluY SINE Alu 0 311 1 831 118 25 103 chr11 35553869 35553936 -115229617 - L1MA4A LINE L1 -116 6187 6116 915 279 99 54 chr11 35553936 35554283 -115229270 - L1MEd LINE L1 -3906 2404 2074 2891 10 0 3 chr11 35554283 35554595 -115228958 - AluYa5 SINE Alu 0 311 1 915 279 99 54 chr11 35554595 35555085 -115228468 - L1MEd LINE L1 -4236 2074 1608 7826 27 0 0 chr11 35555085 35556639 -115226914 - L1PA4 LINE L1 0 6155 4601 915 279 99 54 chr11 35556639 35557306 -115226247 - L1MEd LINE L1 -4702 1608 778 844 158 0 0 chr11 35557338 35557465 -115226088 - FLAM_C SINE Alu -16 127 1 400 249 71 76 chr11 35557520 35557745 -115225808 - L1MEd LINE L1 -5444 675 452 484 184 158 9 chr11 35557812 35557926 -115225627 - Charlie4 DNA MER1_type -13 1948 1818 548 233 73 18 chr11 35558409 35558594 -115224959 + L1MC4a LINE L1 5721 5925 -239 183 219 0 0 chr11 35559118 35559159 -115224394 + L2 LINE L2 3214 3254 -18 768 244 109 9 chr11 35559765 35559994 -115223559 + MIR SINE MIR 9 260 -2 947 161 7 7 chr11 35560006 35560155 -115223398 + MLT1A1 LTR MaLR 171 319 -46 211 324 0 0 chr11 35560166 35560234 -115223319 - L2 LINE L2 -1 3271 3204 2313 111 0 0 chr11 35560262 35560559 -115222994 - AluSx SINE Alu -14 298 2 1918 198 59 86 chr11 35560616 35561173 -115222380 - MLT1F LTR MaLR 0 542 1 194 314 83 16 chr11 35561265 35561386 -115222167 - L2 LINE L2 -235 3037 2909 531 188 0 0 chr11 35561624 35561741 -115221812 + (TCCA)n Simple_repeat Simple_repeat 2 118 0 216 0 0 0 chr11 35561789 35561813 -115221740 + (CA)n Simple_repeat Simple_repeat 1 24 0 531 253 62 10 chr11 35561826 35562020 -115221533 + L2 LINE L2 3107 3310 -3 30 0 0 0 chr11 35562224 35562254 -115221299 + AT_rich Low_complexity Low_complexity 1 30 0 1018 67 22 15 chr11 35562254 35562389 -115221164 - L1PA8 LINE L1 -9 6163 6028 370 172 69 35 chr11 35563241 35563357 -115220196 + L1ME4a LINE L1 5991 6110 -11 1655 187 0 27 chr11 35564441 35564765 -115218788 + AluJo SINE Alu 1 312 0 330 240 86 15 chr11 35566084 35566220 -115217333 - MIR SINE MIR -54 154 3 473 25 114 101 chr11 35566448 35566491 -115217062 - MADE1 DNA Mariner 0 80 39 2325 87 0 3 chr11 35566491 35566780 -115216773 + AluY SINE Alu 1 288 -23 252 0 0 0 chr11 35566780 35566808 -115216745 + (TATG)n Simple_repeat Simple_repeat 1 28 0 473 25 114 101 chr11 35566808 35566842 -115216711 - MADE1 DNA Mariner -40 40 1 373 330 6 29 chr11 35567548 35567721 -115215832 + L3 LINE CR1 920 1088 -489 2482 50 0 0 chr11 35568973 35569296 -115214257 + AluY SINE Alu 1 323 0 683 161 253 0 chr11 35569419 35569581 -115213972 - MER3 DNA MER1_type 0 209 7 1830 179 0 3 chr11 35570580 35570877 -115212676 - AluJb SINE Alu -16 296 1 223 198 33 77 chr11 35571877 35571968 -115211585 - L2 LINE L2 -213 3059 2973 824 247 105 37 chr11 35571991 35572549 -115211004 + MER115 DNA AcHobo 58 693 0 2846 10 0 0 chr11 35573845 35574147 -115209406 + AluYa5 SINE Alu 1 302 -9 396 200 100 8 chr11 35575072 35575192 -115208361 + L1ME4a LINE L1 5974 6104 -17 322 295 203 0 chr11 35575415 35575632 -115207921 - MIR SINE MIR 0 262 2 698 293 39 26 chr11 35575838 35576067 -115207486 - MIR SINE MIR 0 262 31 415 331 19 19 chr11 35576756 35576910 -115206643 + MIR SINE MIR 1 154 -108 302 205 152 45 chr11 35576911 35576999 -115206554 + MER104 DNA Tc2 2 106 -1792 1593 176 41 14 chr11 35576999 35577294 -115206259 - AluJb SINE Alu -9 303 1 302 205 152 45 chr11 35577294 35577317 -115206236 + MER104 DNA Tc2 106 125 -55 22 0 0 0 chr11 35577498 35577520 -115206033 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr11 35577622 35577646 -115205907 + AT_rich Low_complexity Low_complexity 1 24 0 563 286 49 27 chr11 35578152 35578376 -115205177 - MIR SINE MIR -14 248 20 405 58 0 0 chr11 35578630 35578682 -115204871 + (TG)n Simple_repeat Simple_repeat 1 52 0 201 342 35 40 chr11 35578797 35578996 -115204557 + L2 LINE L2 2638 2835 -479 2290 107 10 3 chr11 35579209 35579519 -115204034 - AluSx SINE Alu 0 312 1 2554 62 9 0 chr11 35579817 35580155 -115203398 + L1PA6 LINE L1 4799 5139 -1007 7183 62 5 1 chr11 35580280 35581292 -115202261 + L1PA6 LINE L1 5135 6149 -5 4860 168 29 10 chr11 35583197 35584604 -115198949 - L1MB7 LINE L1 -15 6169 4734 1363 144 57 84 chr11 35584620 35584919 -115198634 - AluJb SINE Alu -21 291 1 848 154 16 0 chr11 35585160 35585283 -115198270 - FLAM_A SINE Alu -8 125 1 335 258 245 0 chr11 35586081 35586244 -115197309 - MLT1J LTR MaLR -50 461 259 1304 191 92 31 chr11 35586292 35586586 -115196967 - AluJo SINE Alu 0 312 1 542 275 164 0 chr11 35586586 35586775 -115196778 - MLT1J LTR MaLR -291 220 1 493 324 77 69 chr11 35587315 35587664 -115195889 - L2 LINE L2 -1 3271 2920 2349 167 32 2 chr11 35588014 35588422 -115195131 - MSTB LTR MaLR -6 420 1 585 321 40 18 chr11 35588708 35588932 -115194621 + MIR SINE MIR 20 248 -14 858 209 6 18 chr11 35589573 35589736 -115193817 + FRAM SINE Alu 1 158 -18 1724 153 10 48 chr11 35589736 35590049 -115193504 + AluJo SINE Alu 1 301 -11 633 289 186 27 chr11 35590621 35591174 -115192379 + L2 LINE L2 2672 3313 0 297 51 0 0 chr11 35591669 35591708 -115191845 + (CA)n Simple_repeat Simple_repeat 1 39 0 362 309 112 78 chr11 35591740 35592009 -115191544 + L2 LINE L2 2988 3265 -7 186 43 0 0 chr11 35592017 35592040 -115191513 + (CA)n Simple_repeat Simple_repeat 1 23 0 274 186 57 0 chr11 35592825 35592895 -115190658 - MIR SINE MIR -41 221 148 21 0 0 0 chr11 35592895 35592916 -115190637 + AT_rich Low_complexity Low_complexity 1 21 0 580 82 0 0 chr11 35592918 35592991 -115190562 - AluSc SINE Alu -27 282 210 867 76 0 0 chr11 35592991 35593096 -115190457 - AluSc SINE Alu -204 105 1 495 189 85 28 chr11 35593098 35593204 -115190349 - MIR SINE MIR -102 160 49 180 0 0 0 chr11 35594210 35594230 -115189323 + (TG)n Simple_repeat Simple_repeat 1 20 0 1456 248 163 16 chr11 35594249 35594741 -115188812 - L1ME1 LINE L1 -5 6161 5598 320 145 16 0 chr11 35595499 35595561 -115187992 - L1PA15 LINE L1 -5 6160 6098 489 323 80 10 chr11 35596162 35596562 -115186991 - L1ME1 LINE L1 -1645 4501 4074 1978 135 10 7 chr11 35596735 35597031 -115186522 - AluSx SINE Alu -12 300 4 306 285 15 39 chr11 35597171 35597301 -115186252 + CT-rich Low_complexity Low_complexity 2 128 0 2202 165 40 3 chr11 35597735 35598086 -115185467 + THE1B LTR MaLR 1 364 0 683 311 21 8 chr11 35598593 35598834 -115184719 + MIR SINE MIR 15 258 -4 26 0 0 0 chr11 35599633 35599659 -115183894 + AT_rich Low_complexity Low_complexity 1 26 0 3833 124 38 5 chr11 35599690 35600303 -115183250 - L1MA8 LINE L1 -18 6273 5641 1465 138 13 4 chr11 35600300 35600525 -115183028 + L1MA8 LINE L1 5431 5657 -655 * 21 0 0 0 chr11 35600709 35600730 -115182823 + AT_rich Low_complexity Low_complexity 1 21 0 204 40 0 0 chr11 35601565 35601590 -115181963 + (T)n Simple_repeat Simple_repeat 1 25 0 672 251 37 25 chr11 35601773 35601936 -115181617 - MER5B DNA MER1_type -12 166 2 253 318 100 9 chr11 35602152 35602262 -115181291 + MIR SINE MIR 27 146 -62 807 292 22 13 chr11 35602649 35602875 -115180678 - MIR SINE MIR 0 262 35 325 299 100 30 chr11 35602955 35603100 -115180453 - MIR SINE MIR -88 120 19 240 191 0 0 chr11 35603139 35603186 -115180367 - MIR SINE MIR -56 206 160 1433 246 107 26 chr11 35603228 35603278 -115180275 - MLT1J1 LTR MaLR -12 434 390 1529 191 48 94 chr11 35603278 35603670 -115179883 - MLT1A2 LTR MaLR 0 374 1 1433 246 107 26 chr11 35603670 35604010 -115179543 - MLT1J1 LTR MaLR -56 390 12 528 311 51 51 chr11 35604050 35604285 -115179268 - MIR SINE MIR -15 247 13 196 231 26 0 chr11 35604312 35604351 -115179202 + MIR SINE MIR 38 77 -131 1674 162 79 4 chr11 35604490 35604768 -115178785 - AluJb SINE Alu -13 299 1 562 247 160 0 chr11 35604944 35605094 -115178459 - MER5A DNA MER1_type -5 184 11 319 303 107 0 chr11 35605216 35605338 -115178215 + L2 LINE L2 3136 3270 -2 2033 132 3 3 chr11 35606251 35606539 -115177014 + AluSx SINE Alu 2 289 -23 948 153 101 48 chr11 35607315 35607607 -115175946 + MSTD LTR MaLR 1 361 -34 453 206 15 132 chr11 35608073 35608209 -115175344 + MER5B DNA MER1_type 59 178 0 180 0 0 0 chr11 35609249 35609269 -115174284 + (TTA)n Simple_repeat Simple_repeat 2 21 0 7492 18 0 0 chr11 35609291 35610129 -115173424 - L1PA3 LINE L1 0 6155 5318 2122 101 3 3 chr11 35610142 35610428 -115173125 - AluSx SINE Alu -26 286 1 720 282 86 83 chr11 35610831 35611463 -115172090 + L2 LINE L2 2640 3293 -20 367 239 44 53 chr11 35612049 35612162 -115171391 + MIR SINE MIR 28 139 -123 1418 142 0 26 chr11 35612172 35612398 -115171155 + AluJo SINE Alu 1 220 -92 779 229 125 39 chr11 35612592 35612969 -115170584 - MLT1G LTR MaLR -104 486 1 359 248 107 16 chr11 35613586 35613707 -115169846 + L2 LINE L2 3179 3310 -3 269 339 83 21 chr11 35613769 35613961 -115169592 - L3 LINE CR1 -703 874 671 243 279 19 67 chr11 35613934 35614038 -115169515 - L2 LINE L2 -3 3269 3171 * 287 263 184 26 chr11 35614353 35614467 -115169086 - MIR SINE MIR -111 151 20 280 244 33 33 chr11 35614468 35614558 -115168995 + MIR SINE MIR 167 256 -6 1489 140 16 8 chr11 35614719 35614976 -115168577 + L1MA4 LINE L1 6042 6300 0 21 0 0 0 chr11 35615003 35615024 -115168529 + AT_rich Low_complexity Low_complexity 1 21 0 370 275 57 33 chr11 35615610 35615821 -115167732 - L2 LINE L2 -1 3312 3097 969 221 74 5 chr11 35615881 35616098 -115167455 - MIR SINE MIR 0 262 31 528 279 54 58 chr11 35616862 35617102 -115166451 + MIR SINE MIR 3 241 -21 1958 204 84 51 chr11 35617127 35617675 -115165878 - L1ME3A LINE L1 -5 6165 5600 2306 85 7 3 chr11 35618145 35618438 -115165115 + AluSx SINE Alu 1 294 -18 324 265 103 97 chr11 35618489 35618597 -115164956 - MIR SINE MIR -4 258 152 294 29 0 0 chr11 35618597 35618632 -115164921 + (TTCCC)n Simple_repeat Simple_repeat 1 35 0 2168 137 0 0 chr11 35618633 35618933 -115164620 - AluSx SINE Alu -12 300 1 1984 147 3 0 chr11 35618938 35619231 -115164322 - AluJb SINE Alu -18 294 1 324 265 103 97 chr11 35619231 35619299 -115164254 - MIR SINE MIR -113 149 73 833 241 38 83 chr11 35620041 35620307 -115163246 - MIR SINE MIR -1 261 8 1658 161 45 7 chr11 35620609 35620895 -115162658 + AluJo SINE Alu 1 297 -15 1093 192 186 39 chr11 35621298 35621688 -115161865 - MER110A LTR ERV1 0 468 53 181 286 179 0 chr11 35621831 35621915 -115161638 + MIR SINE MIR 158 256 -6 336 280 55 55 chr11 35621984 35622184 -115161369 - LTR67 LTR ERVL -4 553 354 390 311 34 14 chr11 35622969 35623117 -115160436 + MIR3 SINE MIR 35 185 -23 181 104 0 42 chr11 35624295 35624343 -115159210 + (TC)n Simple_repeat Simple_repeat 1 46 0 1980 127 0 4 chr11 35624377 35624652 -115158901 - AluSx SINE Alu -38 274 1 195 270 90 0 chr11 35625530 35625619 -115157934 + MIR SINE MIR 140 236 -26 512 314 92 21 chr11 35625881 35626120 -115157433 + MIR SINE MIR 1 256 -6 1874 147 7 0 chr11 35626600 35626886 -115156667 - AluJb SINE Alu -24 288 1 498 332 97 5 chr11 35626892 35627088 -115156465 - MIR SINE MIR -36 226 13 211 312 21 21 chr11 35627665 35627758 -115155795 + CT-rich Low_complexity Low_complexity 3 95 0 246 239 56 14 chr11 35630039 35630110 -115153443 + MIR3 SINE MIR 88 161 -47 376 299 52 8 chr11 35630168 35630302 -115153251 - MER117 DNA MER1_type -26 171 32 2903 10 0 0 chr11 35630305 35630616 -115152937 - AluY SINE Alu 0 311 1 653 168 97 38 chr11 35631837 35632022 -115151531 + L1MC5 LINE L1 7331 7526 -435 2314 112 0 0 chr11 35632028 35632332 -115151221 + AluSg1 SINE Alu 4 307 -2 262 357 48 16 chr11 35632455 35632581 -115150972 - MIR SINE MIR -60 148 19 1412 158 17 33 chr11 35632962 35633202 -115150351 - MER46A DNA MER2_type 0 236 1 2255 203 17 25 chr11 35634116 35634595 -115148958 - L1MA10 LINE L1 0 6334 5860 504 0 0 0 chr11 35634850 35634906 -115148647 + (CA)n Simple_repeat Simple_repeat 2 57 0 1666 158 3 37 chr11 35635046 35635344 -115148209 + AluJo SINE Alu 1 288 -24 896 260 17 22 chr11 35635452 35635683 -115147870 + MIR SINE MIR 14 243 -19 198 250 45 0 chr11 35635693 35635737 -115147816 + L2 LINE L2 3224 3269 -3 1815 137 7 25 chr11 35636795 35637079 -115146474 + AluJo SINE Alu 17 295 -17 319 252 87 26 chr11 35637424 35637539 -115146014 + MER103 DNA DNA 1 122 -44 21 0 0 0 chr11 35637949 35637970 -115145583 + AT_rich Low_complexity Low_complexity 1 21 0 241 276 124 68 chr11 35638080 35638804 -115144749 - L1M4 LINE L1 -2420 3726 2962 14276 121 24 18 chr11 35639210 35641421 -115142132 + L1PB1 LINE L1 1 2223 -4640 6028 128 20 28 chr11 35641419 35642003 -115141550 + L1PB1 LINE L1 5518 6105 -762 * 2769 104 0 3 chr11 35642003 35642368 -115141185 + THE1B LTR MaLR 1 364 0 6028 128 20 28 chr11 35642368 35643136 -115140417 + L1PB1 LINE L1 6105 6860 -7 1842 180 3 0 chr11 35643219 35643514 -115140039 + AluJb SINE Alu 1 296 -16 521 338 38 4 chr11 35643588 35643825 -115139728 - MIR SINE MIR -1 261 17 2434 68 0 40 chr11 35644278 35644602 -115138951 + AluY SINE Alu 1 311 0 432 0 0 0 chr11 35644602 35644650 -115138903 + (TA)n Simple_repeat Simple_repeat 2 49 0 2018 131 10 7 chr11 35645357 35645663 -115137890 + AluSx SINE Alu 1 307 -5 358 285 54 54 chr11 35646221 35646407 -115137146 + MIR SINE MIR 21 206 -56 1036 200 27 22 chr11 35646578 35646803 -115136750 - MIR SINE MIR -10 252 27 1929 113 38 34 chr11 35648266 35648558 -115134995 - AluSq SINE Alu -20 293 1 2269 206 65 55 chr11 35649068 35649556 -115133997 - MLT1E LTR MaLR 0 593 97 1848 163 3 16 chr11 35649556 35649862 -115133691 + AluJb SINE Alu 1 302 -10 2269 206 65 55 chr11 35649862 35649960 -115133593 - MLT1E LTR MaLR -496 97 1 1777 236 92 14 chr11 35650328 35650837 -115132716 - MLT1G LTR MaLR 0 590 42 286 274 11 21 chr11 35650896 35650991 -115132562 - L3 LINE CR1 -1 1576 1483 * 489 363 91 18 chr11 35650988 35651599 -115131954 + L2 LINE L2 2593 3254 -18 207 100 0 0 chr11 35651609 35651639 -115131914 + (GGAA)n Simple_repeat Simple_repeat 3 32 0 427 343 17 11 chr11 35651682 35651863 -115131690 - L3 LINE CR1 -124 1453 1272 2380 112 21 24 chr11 35652117 35652493 -115131060 - THE1C LTR MaLR 0 375 1 242 324 65 29 chr11 35652627 35652766 -115130787 - L3 LINE CR1 -449 1128 985 294 378 67 18 chr11 35652988 35653319 -115130234 - L3 LINE CR1 -579 998 652 180 77 0 0 chr11 35653812 35653838 -115129715 + (TTTTG)n Simple_repeat Simple_repeat 1 26 0 627 301 0 19 chr11 35653843 35654052 -115129501 - MLT1I LTR MaLR -204 205 1 206 355 56 89 chr11 35654190 35654404 -115129149 - L3 LINE CR1 -972 605 399 1166 183 5 27 chr11 35659618 35659842 -115123711 + MER20 DNA MER1_type 1 219 0 301 276 161 65 chr11 35660501 35660856 -115122697 + L2 LINE L2 2379 2767 -547 1877 155 17 46 chr11 35660879 35661228 -115122325 - MER44D DNA MER2_type 0 609 1 223 317 41 41 chr11 35661247 35661392 -115122161 + L2 LINE L2 2916 3060 -212 2156 109 7 0 chr11 35662284 35662569 -115120984 + AluSx SINE Alu 1 287 -25 1417 221 51 71 chr11 35663227 35663720 -115119833 + MER113 DNA MER1_type? 6 488 -33 2019 160 0 3 chr11 35663887 35664200 -115119353 + AluJb SINE Alu 1 312 0 752 196 0 7 chr11 35664236 35664389 -115119164 + L1MB3 LINE L1 6029 6180 -3 22 35 0 0 chr11 35664471 35664500 -115119053 + AT_rich Low_complexity Low_complexity 1 29 0 459 0 0 0 chr11 35666819 35666870 -115116683 + (CA)n Simple_repeat Simple_repeat 2 52 0 535 241 96 6 chr11 35666879 35667045 -115116508 - MIR SINE MIR -16 246 66 858 165 0 0 chr11 35667330 35667463 -115116090 - AluJo SINE Alu -177 135 3 182 292 0 0 chr11 35667925 35667973 -115115580 - L2 LINE L2 -4 3268 3221 1146 284 159 14 chr11 35668515 35669019 -115114534 - MLT1K LTR MaLR -4 584 8 4995 167 26 46 chr11 35669310 35671058 -115112495 + L1MB4 LINE L1 4462 6180 0 1958 151 3 7 chr11 35671150 35671454 -115112099 - AluJo SINE Alu -9 303 1 22 35 0 0 chr11 35671516 35671545 -115112008 + AT_rich Low_complexity Low_complexity 1 29 0 1672 181 0 0 chr11 35671780 35672056 -115111497 + AluJo SINE Alu 11 286 -26 675 118 0 0 chr11 35672173 35672275 -115111278 + L1MA4A LINE L1 6189 6290 -13 228 292 8 25 chr11 35672615 35672735 -115110818 - LTR33 LTR ERVL -403 118 1 2250 107 10 13 chr11 35672994 35673303 -115110250 - AluSx SINE Alu -4 308 1 784 257 63 8 chr11 35673536 35673773 -115109780 + MIR SINE MIR 13 262 0 561 248 25 28 chr11 35674336 35674529 -115109024 - MIR SINE MIR -55 207 3 304 214 0 0 chr11 35675161 35675231 -115108322 - MIR SINE MIR -3 259 190 600 212 18 0 chr11 35675653 35675766 -115107787 + FLAM_A SINE Alu 1 115 -18 2152 154 16 24 chr11 35676557 35676837 -115106716 - MLT1B LTR MaLR 0 390 112 2325 110 0 7 chr11 35676837 35677146 -115106407 - AluSq SINE Alu -6 307 1 2152 154 16 24 chr11 35677146 35677241 -115106312 - MLT1B LTR MaLR -278 112 18 1937 135 44 14 chr11 35677241 35677537 -115106016 + AluSx SINE Alu 1 305 -7 340 325 0 16 chr11 35678868 35678994 -115104559 + MIR3 SINE MIR 54 177 -31 392 258 126 25 chr11 35679545 35679743 -115103810 - MIR SINE MIR -25 237 20 23 33 0 0 chr11 35679871 35679901 -115103652 + AT_rich Low_complexity Low_complexity 1 30 0 1795 158 24 0 chr11 35679901 35680192 -115103361 + AluJb SINE Alu 1 298 -14 691 158 55 0 chr11 35680195 35680322 -115103231 - L1MB4 LINE L1 -2 6178 6045 330 250 30 89 chr11 35681410 35681578 -115101975 - MIR SINE MIR -37 225 68 546 217 130 31 chr11 35681947 35682108 -115101445 + MIR SINE MIR 20 196 -66 954 278 173 7 chr11 35682908 35683329 -115100224 + LTR16C LTR ERVL 1 491 0 189 100 0 0 chr11 35684150 35684172 -115099381 + (TC)n Simple_repeat Simple_repeat 1 25 -5 2315 108 0 0 chr11 35684172 35684467 -115099086 - AluSg SINE Alu -15 295 1 189 100 0 0 chr11 35684467 35684474 -115099079 + (TC)n Simple_repeat Simple_repeat 24 30 0 371 257 164 23 chr11 35684949 35685120 -115098433 + L1ME4a LINE L1 5386 5580 -541 2158 112 0 0 chr11 35685168 35685444 -115098109 + AluSc SINE Alu 1 276 -33 2268 141 76 5 chr11 35685569 35685966 -115097587 - MSTA LTR MaLR -3 425 1 449 264 16 0 chr11 35685996 35686125 -115097428 - MER103 DNA DNA -1 165 35 2306 114 0 0 chr11 35686205 35686502 -115097051 - AluSx SINE Alu -15 297 1 2783 191 59 12 chr11 35686662 35687311 -115096242 - L1ME2 LINE L1 -196 5968 5290 481 300 41 27 chr11 35687592 35687812 -115095741 - L1ME3A LINE L1 -273 5897 5675 231 216 147 20 chr11 35688006 35688108 -115095445 + L1ME4a LINE L1 5708 5822 -299 386 270 68 21 chr11 35688149 35688386 -115095167 + L1ME4a LINE L1 5874 6121 0 327 256 64 48 chr11 35689703 35689828 -115093725 - MIR SINE MIR -126 136 10 725 281 215 45 chr11 35690743 35691822 -115091731 - L2 LINE L2 -686 2628 1366 267 243 213 30 chr11 35691919 35692088 -115091465 + L2 LINE L2 466 665 -2649 211 356 84 21 chr11 35692604 35692795 -115090758 + L2 LINE L2 2583 2785 -529 588 294 16 33 chr11 35693199 35693444 -115090109 + MIR SINE MIR 10 250 -12 2203 123 7 0 chr11 35694457 35694767 -115088786 + AluSx SINE Alu 1 312 0 1121 239 31 59 chr11 35694825 35695281 -115088272 - L2 LINE L2 0 3313 2871 315 0 0 0 chr11 35695563 35695598 -115087955 + (TG)n Simple_repeat Simple_repeat 2 36 0 249 204 0 0 chr11 35695695 35695749 -115087804 + MIR SINE MIR 104 157 -105 201 244 0 0 chr11 35695758 35695803 -115087750 + L2 LINE L2 3210 3254 -18 367 173 105 83 chr11 35696753 35696886 -115086667 - L1ME2 LINE L1 -62 6102 5967 443 91 0 0 chr11 35697287 35697353 -115086200 - MIR SINE MIR -118 144 79 393 208 115 0 chr11 35697864 35697960 -115085593 - MIR SINE MIR -46 216 110 331 292 153 42 chr11 35697979 35698091 -115085462 - MIR3 SINE MIR -28 180 47 1758 176 64 9 chr11 35698091 35698437 -115085116 + MLT1A1 LTR MaLR 1 365 0 331 292 153 42 chr11 35698437 35698468 -115085085 - MIR3 SINE MIR -161 47 21 277 257 50 93 chr11 35698784 35698924 -115084629 - MIR SINE MIR -64 198 65 2478 87 3 0 chr11 35699402 35699711 -115083842 + AluSp SINE Alu 1 310 -3 552 260 0 13 chr11 35700922 35701076 -115082477 + MIR SINE MIR 72 223 -39 546 213 81 12 chr11 35701181 35701341 -115082212 + MIR SINE MIR 92 262 0 519 185 35 40 chr11 35701556 35701724 -115081829 + MIR SINE MIR 33 198 -61 576 301 29 10 chr11 35702137 35702346 -115081207 + MIR SINE MIR 11 223 -39 7251 24 12 2 chr11 35703223 35704075 -115079478 + L1PA4 LINE L1 5285 6144 -11 633 195 6 198 chr11 35704220 35704543 -115079010 - MIR SINE MIR 0 262 2 249 242 45 0 chr11 35704905 35704971 -115078582 - MIR SINE MIR -112 150 82 229 320 107 8 chr11 35706147 35706269 -115077284 - L2 LINE L2 -190 3082 2949 236 402 66 4 chr11 35706345 35706589 -115076964 - L2 LINE L2 -462 2852 2594 2263 273 90 36 chr11 35706713 35707314 -115076239 - L2 LINE L2 -5 3308 2741 1663 167 3 30 chr11 35707314 35707613 -115075940 + AluJo SINE Alu 1 291 -21 2263 273 90 36 chr11 35707613 35708287 -115075266 - L2 LINE L2 -572 2741 1969 1171 254 53 60 chr11 35708413 35708847 -115074706 - MLT1H LTR MaLR 0 549 119 2260 111 0 7 chr11 35709397 35709694 -115073859 - AluSx SINE Alu -17 295 1 1990 123 14 7 chr11 35710620 35710905 -115072648 + AluSx SINE Alu 1 287 -25 598 245 36 0 chr11 35711242 35711381 -115072172 + MER103 DNA DNA 8 151 -15 245 241 19 0 chr11 35711529 35711583 -115071970 + G-rich Low_complexity Low_complexity 5 59 0 250 340 56 15 chr11 35711985 35712184 -115071369 + MIR SINE MIR 35 242 -20 354 23 0 0 chr11 35712352 35712395 -115071158 + (TG)n Simple_repeat Simple_repeat 2 44 0 252 86 0 0 chr11 35713660 35713695 -115069858 + (GAAAA)n Simple_repeat Simple_repeat 2 36 0 227 30 0 30 chr11 35714713 35714746 -115068807 + (TTCC)n Simple_repeat Simple_repeat 3 34 0 749 310 105 21 chr11 35717327 35717690 -115065863 - L2 LINE L2 -1 3312 2981 2537 62 10 0 chr11 35717690 35717996 -115065557 + AluSq SINE Alu 1 309 -4 749 310 105 21 chr11 35717996 35718255 -115065298 - L2 LINE L2 -332 2981 2619 1962 231 61 32 chr11 35718264 35718459 -115065094 - MLT1F LTR MaLR 0 542 354 4522 98 18 15 chr11 35718459 35719125 -115064428 + L1PB2 LINE L1 5483 6150 -1 1962 231 61 32 chr11 35719125 35719316 -115064237 - MLT1F LTR MaLR -188 354 135 396 0 0 0 chr11 35719316 35719360 -115064193 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 1962 231 61 32 chr11 35719360 35719499 -115064054 - MLT1F LTR MaLR -407 135 1 383 281 59 22 chr11 35722085 35722220 -115061333 - MIR3 SINE MIR -54 154 15 735 216 159 24 chr11 35722251 35722459 -115061094 + MIR SINE MIR 6 241 -21 231 36 0 0 chr11 35722460 35722488 -115061065 + (ATG)n Simple_repeat Simple_repeat 2 29 0 197 293 86 0 chr11 35724604 35724662 -115058891 - L2 LINE L2 -1 3312 3250 219 313 16 0 chr11 35724721 35724785 -115058768 - L2 LINE L2 -71 3201 3137 1249 162 50 5 chr11 35724909 35725230 -115058323 - MSTD LTR MaLR 0 396 2 1001 123 0 0 chr11 35726584 35726722 -115056831 - FLAM_C SINE Alu -5 138 1 335 68 23 0 chr11 35726724 35726768 -115056785 - MSTA LTR MaLR -9 419 375 5471 115 9 1 chr11 35726768 35727578 -115055975 - L1PA14 LINE L1 0 6161 5346 1761 128 196 6 chr11 35727578 35727905 -115055648 - MSTA LTR MaLR -39 389 1 226 315 168 30 chr11 35728096 35728293 -115055260 + LTR16C LTR ERVL 11 234 -257 1221 198 23 48 chr11 35728326 35728642 -115054911 + MER74A LTR ERVL 1 225 -235 692 130 22 87 chr11 35728646 35728697 -115054856 + MER74A LTR ERVL 430 483 -75 486 0 0 0 chr11 35728697 35728751 -115054802 + (TA)n Simple_repeat Simple_repeat 2 55 0 2206 99 0 40 chr11 35728754 35729076 -115054477 - AluSc SINE Alu 0 309 1 692 130 22 87 chr11 35729076 35729158 -115054395 + MER74A LTR ERVL 485 558 0 793 259 15 0 chr11 35729158 35729355 -115054198 + LTR16C LTR ERVL 282 481 -10 1604 246 67 9 chr11 35730222 35730653 -115052900 - MLT1K LTR MaLR -4 584 129 1720 158 24 7 chr11 35731025 35731316 -115052237 + AluJb SINE Alu 4 299 -13 903 253 147 9 chr11 35731621 35731941 -115051612 + L2 LINE L2 2931 3294 -19 208 167 0 0 chr11 35731910 35731946 -115051607 + MIR SINE MIR 219 254 -8 * 1037 119 12 0 chr11 35731955 35732123 -115051430 + (TGGA)n Simple_repeat Simple_repeat 1 170 0 450 312 41 12 chr11 35734662 35734832 -115048721 - MIR SINE MIR -8 254 80 180 152 0 0 chr11 35735320 35735353 -115048200 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 909 240 111 11 chr11 35738222 35738493 -115045060 - LTR16A LTR ERVL -98 352 55 21 0 0 0 chr11 35738899 35738920 -115044633 + AT_rich Low_complexity Low_complexity 1 21 0 43641 31 23 5 chr11 35738924 35744971 -115038582 - L1PA3 LINE L1 0 6155 3 422 302 97 58 chr11 35745451 35745586 -115037967 + L2 LINE L2 2842 2970 -302 878 210 33 23 chr11 35745586 35745800 -115037753 - MER20 DNA MER1_type -3 216 1 422 302 97 58 chr11 35745800 35746078 -115037475 + L2 LINE L2 2970 3271 -1 304 313 96 48 chr11 35746349 35746681 -115036872 - MLT1K LTR MaLR -156 432 85 1461 185 38 24 chr11 35746750 35746913 -115036640 - AluJo SINE Alu -10 292 122 207 0 0 0 chr11 35746913 35746936 -115036617 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1461 185 38 24 chr11 35746936 35747059 -115036494 - AluJo SINE Alu -180 122 2 2012 114 0 78 chr11 35747133 35747467 -115036086 - AluSq SINE Alu -5 308 1 656 247 7 6 chr11 35747937 35748109 -115035444 + MIR SINE MIR 49 216 -46 2190 116 0 0 chr11 35748199 35748508 -115035045 - AluSx SINE Alu 0 309 1 284 217 217 11 chr11 35749948 35750040 -115033513 - L2 LINE L2 0 3313 3203 2410 195 84 56 chr11 35750040 35750512 -115033041 + MER44D DNA MER2_type 13 385 -2102 1981 123 63 0 chr11 35750512 35750796 -115032757 - AluSx SINE Alu -10 302 1 2410 195 84 56 chr11 35750796 35751021 -115032532 + MER44D DNA MER2_type 385 602 -3 382 274 181 7 chr11 35751026 35751303 -115032250 - L2 LINE L2 -112 3201 2877 489 276 214 27 chr11 35751307 35751693 -115031860 + L2 LINE L2 2428 2740 -532 1858 142 55 85 chr11 35751693 35752095 -115031458 - MLT1B LTR MaLR 0 390 1 489 276 214 27 chr11 35752095 35752243 -115031310 + L2 LINE L2 2740 3071 -201 3238 204 88 30 chr11 35752279 35752580 -115030973 - L1ME2 LINE L1 -19 6145 5863 308 43 22 0 chr11 35752580 35752626 -115030927 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 3238 204 88 30 chr11 35752626 35753258 -115030295 - L1ME2 LINE L1 -301 5863 5150 355 254 82 99 chr11 35753600 35753698 -115029855 + L1ME4a LINE L1 5583 5681 -440 2295 108 0 0 chr11 35753698 35754005 -115029548 - AluSx SINE Alu -5 307 1 355 254 82 99 chr11 35754005 35754281 -115029272 + L1ME4a LINE L1 5681 5963 -158 206 207 17 0 chr11 35754292 35754350 -115029203 + (TA)n Simple_repeat Simple_repeat 1 59 0 443 199 48 41 chr11 35754790 35754936 -115028617 + L1ME4a LINE L1 5956 6102 -19 271 313 82 14 chr11 35755380 35755527 -115028026 - L2 LINE L2 0 3272 3116 189 222 8 167 chr11 35755522 35755648 -115027905 - MIR SINE MIR 0 262 157 * 558 0 0 0 chr11 35755738 35755800 -115027753 + (TA)n Simple_repeat Simple_repeat 1 62 0 729 292 86 0 chr11 35755800 35756033 -115027520 + MIR SINE MIR 10 262 0 291 333 48 8 chr11 35756049 35756175 -115027378 + L2 LINE L2 3137 3267 -5 293 291 29 29 chr11 35756331 35756434 -115027119 - MIR3 SINE MIR -43 165 63 1953 185 98 49 chr11 35756497 35757006 -115026547 - LTR10A LTR ERV1 -61 548 15 287 231 213 28 chr11 35757857 35757965 -115025588 + MIR3 SINE MIR 65 192 -16 21 36 0 0 chr11 35758273 35758301 -115025252 + AT_rich Low_complexity Low_complexity 1 28 0 482 183 111 8 chr11 35758708 35758834 -115024719 - MIR SINE MIR -26 236 98 531 176 0 0 chr11 35759235 35759326 -115024227 - MER5A DNA MER1_type 0 189 99 500 286 138 35 chr11 35760573 35760644 -115022909 + MIR SINE MIR 4 66 -196 2307 121 43 88 chr11 35760644 35761108 -115022445 + MER65A LTR ERV1 3 445 0 500 286 138 35 chr11 35761108 35761267 -115022286 + MIR SINE MIR 66 258 -4 1849 174 30 0 chr11 35761268 35761566 -115021987 + AluJb SINE Alu 1 307 -5 21 0 0 0 chr11 35761747 35761768 -115021785 + AT_rich Low_complexity Low_complexity 1 21 0 2138 93 0 24 chr11 35762150 35762461 -115021092 - AluSx SINE Alu 0 304 1 688 267 40 13 chr11 35763071 35763296 -115020257 - MIR SINE MIR -12 250 20 1464 144 94 67 chr11 35763397 35763696 -115019857 + AluJo SINE Alu 1 307 -5 715 186 8 0 chr11 35763929 35764053 -115019500 + FLAM_A SINE Alu 18 142 0 1929 106 0 0 chr11 35765371 35765626 -115017927 + AluSg SINE Alu 50 304 -6 7619 34 14 0 chr11 35766122 35767368 -115016185 - L1PA4 LINE L1 -14 6141 4889 43454 35 22 1 chr11 35768101 35774164 -115009389 + L1PA3 LINE L1 1 6191 0 36252 86 11 7 chr11 35774558 35779555 -115003998 + L1P LINE L1 238 5254 -892 1212 58 0 0 chr11 35779555 35779705 -115003848 + L1PA6 LINE L1 6000 6153 -1 1369 224 63 15 chr11 35779706 35780104 -115003449 - L1M4c LINE L1 -4768 1616 1200 261 119 0 0 chr11 35780215 35780257 -115003296 + (TTCC)n Simple_repeat Simple_repeat 1 42 0 182 36 0 36 chr11 35781291 35781319 -115002234 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 228 293 50 20 chr11 35781408 35781507 -115002046 - L2 LINE L2 -3 3269 3168 1097 285 79 42 chr11 35781659 35782284 -115001269 - L1MEd LINE L1 -4745 1565 832 2251 95 0 3 chr11 35782284 35782569 -115000984 - AluSg SINE Alu -26 284 1 1097 285 79 42 chr11 35782569 35782838 -115000715 - L1MEd LINE L1 -5478 832 574 202 278 167 0 chr11 35783572 35783662 -114999891 - MIR SINE MIR -69 193 89 492 257 88 61 chr11 35783771 35784032 -114999521 - L2 LINE L2 0 3313 3046 197 360 20 0 chr11 35785212 35785312 -114998241 + MIR3 SINE MIR 74 175 -33 306 258 43 0 chr11 35785712 35785805 -114997748 - MIR3 SINE MIR -3 205 109 2194 130 0 0 chr11 35785812 35786112 -114997441 + AluSx SINE Alu 1 300 -12 560 267 65 54 chr11 35787587 35787864 -114995689 - L1ME3A LINE L1 -207 5963 5684 475 283 107 6 chr11 35788385 35788562 -114994991 - MER91A DNA MER1_type 0 196 2 2202 90 42 0 chr11 35788593 35788881 -114994672 + AluY SINE Alu 1 300 -11 181 250 16 31 chr11 35789503 35789567 -114993986 + MIR SINE MIR 44 106 -102 796 277 34 47 chr11 35789571 35789806 -114993747 - MIR SINE MIR 0 262 31 2034 131 0 3 chr11 35789895 35790208 -114993345 + AluSx SINE Alu 1 312 0 445 200 117 8 chr11 35791563 35791683 -114991870 + MER117 DNA MER1_type 65 197 0 347 330 110 53 chr11 35792042 35792269 -114991284 - L2 LINE L2 -31 3241 3002 2045 144 6 34 chr11 35792793 35793147 -114990406 + MLT1A1 LTR MaLR 21 364 -1 6682 137 55 37 chr11 35793396 35794652 -114988901 - MER52C LTR ERV1 0 1278 1 386 225 208 17 chr11 35795151 35795271 -114988282 + MIR SINE MIR 118 260 -2 915 152 0 0 chr11 35795349 35795487 -114988066 + FRAM SINE Alu 1 138 -38 2042 91 0 17 chr11 35795697 35795984 -114987569 - AluSc SINE Alu -18 291 10 324 0 0 0 chr11 35799880 35799916 -114983637 + (CA)n Simple_repeat Simple_repeat 2 37 0 254 289 70 18 chr11 35801803 35801917 -114981636 + MIR SINE MIR 87 206 -56 1568 151 154 31 chr11 35803942 35804267 -114979286 + MLT1A1 LTR MaLR 1 365 0 15376 174 39 8 chr11 35805153 35811661 -114971892 - L1PB1 LINE L1 0 6867 1 421 267 60 9 chr11 35811775 35811891 -114971662 - L2 LINE L2 -1 3271 3150 205 270 40 40 chr11 35812725 35812799 -114970754 - L3 LINE CR1 0 1577 1504 320 226 129 11 chr11 35813191 35813284 -114970269 + MIR SINE MIR 39 142 -120 1624 163 37 17 chr11 35813847 35814141 -114969412 + AluJo SINE Alu 1 300 -12 227 354 31 16 chr11 35814508 35814635 -114968918 + MIR SINE MIR 132 260 -2 284 260 41 0 chr11 35815094 35815167 -114968386 + MIR SINE MIR 65 140 -68 1007 182 14 42 chr11 35815308 35815522 -114968031 - MER3 DNA MER1_type 0 209 2 1804 175 35 27 chr11 35815669 35816040 -114967513 + MLT1A2 LTR MaLR 1 374 0 309 280 91 23 chr11 35816480 35816612 -114966941 - MIR SINE MIR -19 243 103 225 260 0 0 chr11 35816627 35816677 -114966876 + (TGAA)n Simple_repeat Simple_repeat 1 50 0 995 231 45 25 chr11 35816789 35817031 -114966522 - MIR SINE MIR -3 259 13 541 234 75 109 chr11 35817277 35817516 -114966037 - L2 LINE L2 -26 3246 3016 2493 169 83 9 chr11 35818456 35818923 -114964630 - LTR44 LTR ERV1 0 519 18 328 265 24 0 chr11 35819432 35819532 -114964021 - MIR SINE MIR -56 152 50 1380 160 98 21 chr11 35820015 35820302 -114963251 + AluJo SINE Alu 1 309 -3 1894 209 40 21 chr11 35820550 35820976 -114962577 + MER63B DNA MER1_type 3 436 0 395 181 0 75 chr11 35821555 35821581 -114961972 + LTR33 LTR ERVL 423 449 -72 1741 178 106 3 chr11 35821581 35821912 -114961641 - MLT1A1 LTR MaLR 0 365 1 395 181 0 75 chr11 35821912 35821979 -114961574 + LTR33 LTR ERVL 449 509 -12 744 326 30 4 chr11 35822055 35822291 -114961262 + MIR SINE MIR 21 262 0 364 163 165 3 chr11 35822299 35822402 -114961151 - L1MA9 LINE L1 -168 6132 6005 533 312 50 5 chr11 35823035 35823234 -114960319 + MIR SINE MIR 47 254 -8 472 220 220 43 chr11 35823619 35823874 -114959679 + Charlie8 DNA MER1_type 38 337 -2080 421 302 14 7 chr11 35823903 35824042 -114959511 + L2 LINE L2 1429 1568 -1746 652 189 14 42 chr11 35824045 35824188 -114959365 + MSTD LTR MaLR 1 139 -257 704 44 0 11 chr11 35824191 35824282 -114959271 + AluY SINE Alu 210 299 -12 602 193 79 13 chr11 35824336 35824527 -114959026 + MSTD LTR MaLR 169 396 0 2384 262 107 0 chr11 35824530 35825287 -114958266 + L2 LINE L2 1571 2408 -906 918 148 0 13 chr11 35825399 35825554 -114957999 - FRAM SINE Alu -24 152 1 979 249 168 20 chr11 35825582 35826178 -114957375 + L2 LINE L2 2611 3313 0 1874 123 3 64 chr11 35827073 35827399 -114956154 - AluSx SINE Alu -6 306 1 1109 198 33 16 chr11 35828833 35828959 -114954594 + AluJb SINE Alu 1 123 -189 261 0 0 0 chr11 35828959 35828988 -114954565 + (CA)n Simple_repeat Simple_repeat 2 30 0 1109 198 33 16 chr11 35828988 35829104 -114954449 + AluJb SINE Alu 123 247 -65 252 0 0 0 chr11 35830394 35830422 -114953131 + (TG)n Simple_repeat Simple_repeat 2 29 0 306 258 101 11 chr11 35830452 35830541 -114953012 + MIR SINE MIR 79 175 -87 1149 185 35 52 chr11 35830807 35831122 -114952431 + AluJo SINE Alu 1 310 0 577 174 122 111 chr11 35831125 35831413 -114952140 + MER34 LTR ERV1 252 542 0 407 268 197 28 chr11 35831422 35831635 -114951918 + MIR SINE MIR 12 260 -2 413 218 158 61 chr11 35832852 35833017 -114950536 + MIR SINE MIR 81 261 -1 606 241 186 10 chr11 35833169 35833368 -114950185 - MIR SINE MIR -1 261 28 243 295 9 67 chr11 35833707 35833812 -114949741 + MIR3 SINE MIR 1 99 -109 1244 176 59 64 chr11 35834115 35834437 -114949116 + MLT2B3 LTR ERVL 238 554 0 308 316 112 11 chr11 35835114 35835301 -114948252 - MIR SINE MIR -55 207 2 248 267 100 11 chr11 35835593 35835683 -114947870 + MIR SINE MIR 48 145 -117 454 259 61 42 chr11 35839247 35839359 -114944194 + L1MC/D LINE L1 5568 5676 -445 760 167 0 36 chr11 35839359 35839497 -114944056 - FLAM_C SINE Alu 0 133 1 454 259 61 42 chr11 35839497 35839636 -114943917 + L1MC/D LINE L1 5676 5825 -296 21 0 0 0 chr11 35839668 35839689 -114943864 + AT_rich Low_complexity Low_complexity 1 21 0 591 172 9 0 chr11 35839704 35839820 -114943733 + L1MB7 LINE L1 5126 5242 -904 741 172 0 0 chr11 35839826 35839942 -114943611 + FLAM_C SINE Alu 3 118 -25 2053 148 18 33 chr11 35839973 35840045 -114943508 + L1MB7 LINE L1 5257 5329 -855 1548 166 60 32 chr11 35840045 35840328 -114943225 + AluJo SINE Alu 1 291 -11 2053 148 18 33 chr11 35840328 35840653 -114942900 + L1MB7 LINE L1 5329 5648 -536 2350 193 26 8 chr11 35840934 35841438 -114942115 + L1MB7 LINE L1 5656 6168 -16 240 270 90 11 chr11 35842359 35842448 -114941105 - MIR SINE MIR 0 262 167 3974 136 77 9 chr11 35842810 35843575 -114939978 - Tigger3(Golem) DNA MER2_type -60 2969 2153 1008 128 0 0 chr11 35843576 35843717 -114939836 - AluSg/x SINE Alu -5 307 167 454 109 185 0 chr11 35843717 35843836 -114939717 - Tigger3(Golem) DNA MER2_type -879 2150 213 856 128 42 74 chr11 35843854 35843958 -114939595 - L1M2 LINE L1 -678 5619 5519 2227 135 0 0 chr11 35843958 35844269 -114939284 + AluSx SINE Alu 2 312 0 856 128 42 74 chr11 35844269 35844358 -114939195 - L1M2 LINE L1 -778 5519 5429 190 313 76 28 chr11 35845362 35845506 -114938047 + L2 LINE L2 2891 3041 -231 213 296 0 28 chr11 35845595 35845666 -114937887 + L2 LINE L2 3178 3246 -26 323 293 167 37 chr11 35845699 35845914 -114937639 + MIR SINE MIR 20 262 0 3292 148 36 26 chr11 35846219 35846840 -114936713 + Cheshire DNA MER1_type 1751 2381 -39 2266 112 0 0 chr11 35846840 35847136 -114936417 + AluSx SINE Alu 1 296 -16 3292 148 36 26 chr11 35847136 35847177 -114936376 + Cheshire DNA MER1_type 2381 2420 0 451 91 0 0 chr11 35847614 35847680 -114935873 + Cheshire DNA MER1_type 2036 2101 -319 1886 157 0 0 chr11 35847979 35848290 -114935263 + AluSx SINE Alu 1 311 0 313 253 0 71 chr11 35848291 35848390 -114935163 - MIR SINE MIR -55 153 62 535 269 41 14 chr11 35848836 35848981 -114934572 - MIR SINE MIR -106 156 8 1752 125 0 104 chr11 35849056 35849393 -114934160 + AluY SINE Alu 1 302 -9 25 31 0 0 chr11 35849755 35849787 -114933766 + AT_rich Low_complexity Low_complexity 1 32 0 361 249 121 30 chr11 35849901 35850066 -114933487 + MIR SINE MIR 83 262 0 780 262 47 11 chr11 35850335 35850565 -114932988 + MIR SINE MIR 2 232 -30 206 290 187 19 chr11 35851720 35851827 -114931726 - MIR3 SINE MIR -54 154 30 1248 156 0 45 chr11 35852542 35852766 -114930787 + AluJo SINE Alu 87 300 -12 311 277 21 64 chr11 35853680 35853821 -114929732 + L1ME4a LINE L1 5982 6116 -5 22876 70 20 13 chr11 35854475 35858318 -114925235 + L1PA7 LINE L1 2290 6154 0 3744 146 38 34 chr11 35858529 35858786 -114924767 + Tigger2 DNA MER2_type 1 255 -2463 1663 151 54 0 chr11 35858786 35859064 -114924489 + AluJb SINE Alu 1 293 -19 3744 146 38 34 chr11 35859064 35859562 -114923991 + Tigger2 DNA MER2_type 255 759 -1959 1544 150 4 0 chr11 35859617 35859871 -114923682 + Tigger2 DNA MER2_type 2464 2718 0 306 211 29 0 chr11 35859871 35859975 -114923578 + (TA)n Simple_repeat Simple_repeat 2 108 0 788 225 39 0 chr11 35860136 35860318 -114923235 - MER5A DNA MER1_type 0 189 1 2176 118 36 38 chr11 35860490 35860855 -114922698 + THE1B LTR MaLR 1 364 0 1896 139 109 5 chr11 35860855 35861222 -114922331 + MSTA LTR MaLR 24 428 0 247 309 18 65 chr11 35861236 35861404 -114922149 - MIR SINE MIR -5 257 98 1412 238 149 37 chr11 35861410 35861973 -114921580 + MLT1E2 LTR MaLR 1 626 0 2184 103 7 17 chr11 35861974 35862274 -114921279 + AluSx SINE Alu 1 297 -15 313 267 117 42 chr11 35862534 35862654 -114920899 - MIR3 SINE MIR -15 193 65 1740 80 4 4 chr11 35862966 35863203 -114920350 - L1PA10 LINE L1 -19 6149 5913 593 102 0 59 chr11 35864055 35864173 -114919380 - AluSp/q SINE Alu 0 313 203 2259 89 7 0 chr11 35864275 35864567 -114918986 + AluSg SINE Alu 1 294 -16 360 0 0 0 chr11 35865876 35865916 -114917637 + (CA)n Simple_repeat Simple_repeat 2 41 0 256 234 56 28 chr11 35865923 35866030 -114917523 + MER54A LTR ERVL 484 593 -308 242 174 72 58 chr11 35866035 35866104 -114917449 + FRAM SINE Alu 43 112 -54 787 119 35 7 chr11 35866107 35866250 -114917303 + MER54B LTR ERVL 643 789 -4 540 329 167 48 chr11 35866812 35867451 -114916102 + L2 LINE L2 1977 2691 -623 315 318 47 6 chr11 35867546 35867749 -114915804 + MLT1L LTR MaLR 313 479 -32 1851 144 24 0 chr11 35867965 35868257 -114915296 + AluSx SINE Alu 1 299 -13 1665 192 93 0 chr11 35868546 35868879 -114914674 + MLT1A1 LTR MaLR 2 365 0 2410 84 0 0 chr11 35868907 35869205 -114914348 + AluY SINE Alu 2 299 -12 234 128 0 0 chr11 35870657 35870696 -114912857 + (TCC)n Simple_repeat Simple_repeat 1 39 0 785 168 0 0 chr11 35870983 35871108 -114912445 - FLAM_A SINE Alu -8 125 1 25 0 0 0 chr11 35871416 35871441 -114912112 + AT_rich Low_complexity Low_complexity 1 25 0 508 251 124 81 chr11 35871441 35871851 -114911702 - MLT1G LTR MaLR -42 548 121 1052 272 92 24 chr11 35872162 35872598 -114910955 + L2 LINE L2 2774 3235 -78 680 185 32 53 chr11 35873401 35873590 -114909963 + Charlie1 DNA MER1_type 2577 2761 0 329 257 9 53 chr11 35873591 35873704 -114909849 + L1MEc LINE L1 632 739 -5657 3038 233 99 12 chr11 35873714 35874833 -114908720 + L1MEc LINE L1 2426 3642 -2573 335 247 113 75 chr11 35876014 35876156 -114907397 + L1ME4a LINE L1 5897 6049 -72 2113 135 0 0 chr11 35876156 35876453 -114907100 - AluSx SINE Alu -15 297 1 335 247 113 75 chr11 35876453 35876496 -114907057 + L1ME4a LINE L1 6049 6089 -32 21 0 0 0 chr11 35877214 35877235 -114906318 + AT_rich Low_complexity Low_complexity 1 21 0 1838 161 3 16 chr11 35878001 35878306 -114905247 - AluJo SINE Alu -11 301 1 207 246 29 0 chr11 35878571 35878640 -114904913 + (TA)n Simple_repeat Simple_repeat 2 72 0 181 375 0 0 chr11 35878753 35878809 -114904744 + L2 LINE L2 3250 3305 -8 21 0 0 0 chr11 35883031 35883052 -114900501 + AT_rich Low_complexity Low_complexity 1 21 0 2080 121 3 23 chr11 35883507 35883814 -114899739 - AluSx SINE Alu -11 301 1 1318 178 80 38 chr11 35885383 35885670 -114897883 - AluJo SINE Alu -13 299 1 937 140 104 133 chr11 35886011 35886088 -114897465 + AluJo SINE Alu 40 118 -194 300 27 0 0 chr11 35886088 35886125 -114897428 + (TAA)n Simple_repeat Simple_repeat 1 37 0 937 140 104 133 chr11 35886125 35886326 -114897227 + AluJo SINE Alu 118 310 -2 1366 224 14 3 chr11 35886331 35886617 -114896936 + AluJb SINE Alu 11 299 -13 23 0 0 0 chr11 35887560 35887583 -114895970 + AT_rich Low_complexity Low_complexity 1 23 0 893 288 81 32 chr11 35888365 35889084 -114894469 + L1MEc LINE L1 783 1565 -4831 1954 137 7 13 chr11 35889084 35889383 -114894170 + AluJo SINE Alu 1 297 -15 893 288 81 32 chr11 35889383 35889653 -114893900 + L1MEc LINE L1 1565 1820 -4576 404 269 24 12 chr11 35889668 35890259 -114893294 + L1MEc LINE L1 1880 2552 -3663 2815 166 94 25 chr11 35890310 35890917 -114892636 - MLT1E1 LTR MaLR -5 649 1 374 266 40 40 chr11 35890922 35891099 -114892454 + L1MEc LINE L1 2610 2786 -3429 5077 234 70 29 chr11 35891202 35893310 -114890243 + L1MEc LINE L1 2775 6210 -29 2191 155 31 75 chr11 35893327 35893529 -114890024 + L1MD3 LINE L1 7497 7706 -289 2048 123 40 7 chr11 35893529 35893830 -114889723 + AluSx SINE Alu 2 312 0 2191 155 31 75 chr11 35893830 35894149 -114889404 + L1MD3 LINE L1 7706 7995 0 478 295 45 19 chr11 35894394 35894441 -114889112 + MIR SINE MIR 28 72 -190 2732 130 36 7 chr11 35894441 35894857 -114888696 + MSTA LTR MaLR 1 428 0 478 295 45 19 chr11 35894857 35894965 -114888588 + MIR SINE MIR 72 187 -75 370 309 72 26 chr11 35895054 35895162 -114888391 + MIR3 SINE MIR 36 154 -54 1236 209 5 5 chr11 35895162 35895382 -114888171 + MER58A DNA MER1_type 4 223 -1 370 309 72 26 chr11 35895382 35895425 -114888128 + MIR3 SINE MIR 154 194 -14 240 111 0 0 chr11 35895825 35895861 -114887692 + (A)n Simple_repeat Simple_repeat 1 36 0 469 279 72 58 chr11 35896050 35896130 -114887423 + MIR SINE MIR 17 94 -168 2490 46 0 0 chr11 35896130 35896438 -114887115 - AluY SINE Alu 0 308 1 469 279 72 58 chr11 35896438 35896564 -114886989 + MIR SINE MIR 94 227 -35 207 324 40 27 chr11 35897115 35897189 -114886364 + MIR SINE MIR 1 75 -187 231 279 98 25 chr11 35898555 35898677 -114884876 - L2 LINE L2 -819 2495 2365 180 0 0 0 chr11 35898694 35898714 -114884839 + (T)n Simple_repeat Simple_repeat 1 20 0 277 246 215 26 chr11 35898744 35898939 -114884614 - HAL1 LINE L1 0 2507 2276 405 323 94 23 chr11 35899252 35899559 -114883994 - L2 LINE L2 -994 2320 1992 22 35 0 0 chr11 35900095 35900124 -114883429 + AT_rich Low_complexity Low_complexity 1 29 0 297 242 0 88 chr11 35900784 35900875 -114882678 - MER5B DNA MER1_type -76 102 20 328 275 185 51 chr11 35901187 35901648 -114881905 + L2 LINE L2 2715 3248 -24 221 279 104 60 chr11 35901876 35902077 -114881476 - L2 LINE L2 -423 2891 2682 208 113 38 57 chr11 35903363 35903416 -114880137 + C-rich Low_complexity Low_complexity 2 53 0 1132 162 21 30 chr11 35905165 35905399 -114878154 - MER96B DNA MER1_type? 0 417 186 1988 148 7 0 chr11 35905437 35905728 -114877825 - AluSq SINE Alu -20 293 1 1632 169 30 20 chr11 35906244 35906539 -114877014 + AluJb SINE Alu 1 298 -14 794 204 0 0 chr11 35908445 35908577 -114874976 - FLAM_A SINE Alu -1 132 1 769 258 96 82 chr11 35908604 35909081 -114874472 + LTR33 LTR ERVL 36 519 -2 1860 246 32 41 chr11 35910218 35910686 -114872867 - LTR16B LTR ERVL 0 464 1 2221 137 73 6 chr11 35911321 35911663 -114871890 + MLT1A1 LTR MaLR 1 365 0 441 259 146 33 chr11 35911664 35911876 -114871677 - LTR50 LTR ERVL -165 630 395 378 108 0 0 chr11 35911936 35912001 -114871552 + (CA)n Simple_repeat Simple_repeat 1 65 0 2121 124 0 7 chr11 35912608 35912906 -114870647 - AluSx SINE Alu -16 296 1 529 226 0 15 chr11 35913705 35913838 -114869715 + L1PB4 LINE L1 4882 5012 -1134 367 103 0 29 chr11 35913874 35913942 -114869611 + (GAAAA)n Simple_repeat Simple_repeat 4 69 0 266 170 0 0 chr11 35913942 35913995 -114869558 + L1PB4 LINE L1 5002 5054 -1092 218 105 26 0 chr11 35914012 35914050 -114869503 + GA-rich Low_complexity Low_complexity 2 40 0 549 203 41 0 chr11 35914051 35914174 -114869379 + L1PB4 LINE L1 5040 5167 -979 1060 107 0 0 chr11 35914197 35914356 -114869197 + L1PB4 LINE L1 5151 5309 -837 274 114 0 0 chr11 35914374 35914418 -114869135 + LOR1a LTR ERV1 240 283 -214 812 135 23 0 chr11 35914502 35914635 -114868918 + FLAM_C SINE Alu 1 136 -7 463 171 0 0 chr11 35914648 35914718 -114868835 + AluJ/FRAM SINE Alu 228 297 -15 233 118 0 0 chr11 35914761 35914795 -114868758 + L1PB4 LINE L1 5317 5350 -796 21 0 0 0 chr11 35915069 35915090 -114868463 + AT_rich Low_complexity Low_complexity 1 21 0 207 0 0 0 chr11 35915127 35915150 -114868403 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1248 154 68 14 chr11 35915252 35915472 -114868081 + L1PB4 LINE L1 5922 6153 -3 38 0 0 0 chr11 35915493 35915531 -114868022 + AT_rich Low_complexity Low_complexity 1 38 0 2987 78 18 13 chr11 35917059 35917457 -114866096 + L1PA8 LINE L1 5771 6170 -2 2292 123 0 0 chr11 35917757 35918067 -114865486 + AluSx SINE Alu 1 310 -2 394 288 89 29 chr11 35918134 35918415 -114865138 - L1ME4a LINE L1 -262 5859 5562 264 250 37 93 chr11 35918466 35918734 -114864819 + L1M4 LINE L1 2788 3040 -3106 195 129 0 0 chr11 35918883 35918914 -114864639 + (TG)n Simple_repeat Simple_repeat 1 31 0 212 329 18 114 chr11 35918954 35919182 -114864371 - L2 LINE L2 -110 3162 2957 210 71 0 0 chr11 35920182 35920210 -114863343 + (T)n Simple_repeat Simple_repeat 1 28 0 425 304 70 6 chr11 35920241 35920399 -114863154 + MIR3 SINE MIR 35 202 -6 2783 122 49 5 chr11 35920769 35921179 -114862374 + MSTA LTR MaLR 1 428 0 202 352 63 42 chr11 35921462 35921604 -114861949 - MIR3 SINE MIR -61 147 3 808 158 81 54 chr11 35921706 35921831 -114861722 + L1M4 LINE L1 4622 4757 -1389 2150 120 0 38 chr11 35921831 35922147 -114861406 + AluSx SINE Alu 1 304 -8 808 158 81 54 chr11 35922147 35922242 -114861311 + L1M4 LINE L1 4757 4848 -1298 1003 221 94 22 chr11 35922315 35922582 -114860971 - L1ME1 LINE L1 -5 6161 5876 * 1566 276 50 42 chr11 35922575 35922864 -114860689 + L1M4 LINE L1 4032 4317 -1829 1993 138 7 17 chr11 35922864 35923162 -114860391 + AluSx SINE Alu 1 295 -17 1566 276 50 42 chr11 35923162 35923766 -114859787 + L1M4 LINE L1 4317 4932 -1214 * 2836 200 54 16 chr11 35923756 35924516 -114859037 + L1MDa LINE L1 2438 3220 -3320 5124 127 12 38 chr11 35924518 35924660 -114858893 + L1MA2 LINE L1 4935 5079 -1225 1958 138 0 45 chr11 35924660 35924972 -114858581 - AluJb SINE Alu -14 298 1 5124 127 12 38 chr11 35924972 35925982 -114857571 + L1MA2 LINE L1 5079 6055 -249 727 224 89 4 chr11 35925978 35926259 -114857294 + L1MDa LINE L1 3445 3749 -2791 * 1156 72 0 0 chr11 35926259 35926397 -114857156 + AluY SINE Alu 1 138 -173 225 69 0 0 chr11 35926398 35926427 -114857126 + Alu SINE Alu 239 267 -35 6415 181 44 90 chr11 35926427 35927895 -114855658 + L1MB7 LINE L1 3742 5277 -1301 642 119 20 0 chr11 35927895 35927996 -114855557 + L1PB2 LINE L1 6048 6150 -1 6415 181 44 90 chr11 35927996 35928570 -114854983 + L1MB7 LINE L1 5277 5876 -702 1462 185 64 20 chr11 35928570 35928868 -114854685 + AluJo SINE Alu 1 311 -1 6415 181 44 90 chr11 35928868 35929667 -114853886 + L1MB7 LINE L1 5876 6447 -131 2362 82 7 3 chr11 35929667 35929972 -114853581 + AluSq SINE Alu 1 306 -7 6415 181 44 90 chr11 35929972 35930057 -114853496 + L1MB7 LINE L1 6447 6534 -44 2823 186 73 30 chr11 35930262 35930903 -114852650 - LTR65 LTR ERV1 0 669 1 794 104 26 17 chr11 35932558 35932673 -114850880 + FLAM_C SINE Alu 1 116 -17 240 163 0 0 chr11 35932965 35933008 -114850545 + (TAA)n Simple_repeat Simple_repeat 3 45 0 282 250 109 0 chr11 35933167 35933259 -114850294 - L2 LINE L2 -6 3307 3206 210 262 48 39 chr11 35933386 35933489 -114850064 + MIR3 SINE MIR 96 199 -9 324 0 0 0 chr11 35933736 35933772 -114849781 + (CA)n Simple_repeat Simple_repeat 2 37 0 426 214 20 20 chr11 35934473 35934571 -114848982 - MER5A DNA MER1_type -83 106 9 977 154 6 0 chr11 35934857 35935013 -114848540 - AluJo SINE Alu 0 312 156 967 156 6 24 chr11 35935059 35935226 -114848327 - AluJo SINE Alu -148 164 1 372 272 117 99 chr11 35935420 35935703 -114847850 - L2 LINE L2 0 3272 2985 242 274 48 60 chr11 35936235 35936319 -114847234 - MIR SINE MIR -83 125 43 1966 133 14 111 chr11 35936453 35936875 -114846678 - LOR1b LTR ERV1 0 461 81 2253 83 3 10 chr11 35987271 35987572 -114795981 + AluSx SINE Alu 1 299 -13 1594 176 0 41 chr11 35988109 35988255 -114795298 + AluJo SINE Alu 1 151 -161 1895 152 0 0 chr11 35988255 35988551 -114795002 + AluSx SINE Alu 1 296 -16 1594 176 0 41 chr11 35988551 35988723 -114794830 + AluJo SINE Alu 151 306 -6 27 0 0 0 chr11 35989234 35989261 -114794292 + AT_rich Low_complexity Low_complexity 1 27 0 2171 85 0 0 chr11 35989684 35989967 -114793586 + AluSx SINE Alu 13 295 -17 377 127 16 32 chr11 35990128 35990191 -114793362 - MIR SINE MIR -82 180 119 581 228 39 8 chr11 35990193 35990320 -114793233 + MER63 DNA MER1_type 4 760 -302 361 252 10 68 chr11 35990530 35990633 -114792920 - MIR SINE MIR -155 107 11 2150 113 0 0 chr11 35990874 35991197 -114792356 - AluSx SINE Alu 0 312 1 2171 113 0 0 chr11 35991450 35991750 -114791803 - AluSx SINE Alu -12 300 1 413 154 287 49 chr11 35992053 35992196 -114791357 - MER69A DNA AcHobo 0 177 1 2377 90 0 0 chr11 35992577 35992876 -114790677 + AluSq SINE Alu 3 301 -12 586 288 118 0 chr11 35992922 35993134 -114790419 + MER112 DNA MER1_type 17 253 -7 250 277 0 0 chr11 35993565 35993612 -114789941 + L2 LINE L2 3134 3180 -92 275 283 151 0 chr11 35993660 35993766 -114789787 - MIR SINE MIR -95 167 46 249 194 11 32 chr11 35994323 35994416 -114789137 + (TAGA)n Simple_repeat Simple_repeat 2 92 0 1896 137 10 10 chr11 35994489 35994782 -114788771 + AluSx SINE Alu 1 293 -19 2655 35 0 10 chr11 35994783 35995095 -114788458 + AluY SINE Alu 1 309 -2 2297 76 36 3 chr11 35995459 35995761 -114787792 + AluSx SINE Alu 1 312 0 576 245 95 40 chr11 35995917 35996117 -114787436 + MIR SINE MIR 16 226 -36 293 293 42 61 chr11 35996138 35996350 -114787203 + L1ME3 LINE L1 5745 5952 -210 306 0 0 0 chr11 35996354 35996388 -114787165 + (TC)n Simple_repeat Simple_repeat 2 35 0 * 315 0 0 0 chr11 35996387 35996422 -114787131 + (TA)n Simple_repeat Simple_repeat 1 35 0 2192 125 3 0 chr11 35996422 35996727 -114786826 - AluSx SINE Alu 0 312 7 214 163 47 0 chr11 35996761 35996804 -114786749 + (TATATG)n Simple_repeat Simple_repeat 6 50 0 345 189 0 27 chr11 35996804 35996878 -114786675 - L1PA15 LINE L1 0 6165 6094 997 103 35 14 chr11 35997788 35997933 -114785620 + THE1B LTR MaLR 1 148 -216 1456 171 17 38 chr11 35997958 35998245 -114785308 + AluJo SINE Alu 18 298 -14 2276 75 4 4 chr11 35998365 35998645 -114784908 - AluSg SINE Alu -30 280 1 525 293 83 15 chr11 35998648 35998853 -114784700 - MIR SINE MIR -7 255 37 2668 36 0 0 chr11 35999287 35999588 -114783965 + AluY SINE Alu 1 301 -10 240 35 0 0 chr11 36000084 36000113 -114783440 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 1945 101 0 4 chr11 36000117 36000375 -114783178 - AluSg SINE Alu -28 282 26 31 88 0 0 chr11 36000991 36001071 -114782482 + AT_rich Low_complexity Low_complexity 1 80 0 326 301 90 38 chr11 36001345 36001478 -114782075 + L2 LINE L2 3161 3300 -13 306 0 0 0 chr11 36001478 36001512 -114782041 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 511 228 44 44 chr11 36002395 36002553 -114781000 - MIR SINE MIR -56 206 49 2179 107 0 22 chr11 36002768 36003086 -114780467 - AluSx SINE Alu -1 311 1 2176 95 17 14 chr11 36003224 36003518 -114780035 + AluSq SINE Alu 1 295 -18 216 0 0 0 chr11 36003796 36003820 -114779733 + (CAAAC)n Simple_repeat Simple_repeat 2 25 0 329 183 150 100 chr11 36003923 36004043 -114779510 - MER94 DNA DNA -1 133 8 205 338 45 20 chr11 36004089 36004287 -114779266 + L2 LINE L2 1681 1883 -1431 502 125 0 50 chr11 36004352 36004432 -114779121 - AluJb SINE Alu -151 161 86 180 272 226 23 chr11 36004446 36004663 -114778890 + L2 LINE L2 1983 2243 -1071 1215 208 45 150 chr11 36004673 36004867 -114778686 - L2 LINE L2 0 3313 3100 2131 103 0 0 chr11 36004867 36005140 -114778413 + AluSg SINE Alu 1 273 -37 180 0 0 0 chr11 36005144 36005164 -114778389 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 1215 208 45 150 chr11 36005164 36005662 -114777891 - L2 LINE L2 -216 3097 2691 790 240 180 31 chr11 36005662 36006014 -114777539 - LTR16A LTR ERVL 0 450 47 608 234 83 102 chr11 36006176 36006276 -114777277 + L2 LINE L2 2651 2751 -563 2211 117 13 0 chr11 36006276 36006584 -114776969 + AluSx SINE Alu 1 312 0 608 234 83 102 chr11 36006584 36006748 -114776805 + L2 LINE L2 2751 2910 -404 831 154 0 0 chr11 36007172 36007295 -114776258 + FLAM_C SINE Alu 1 123 -20 2191 95 7 0 chr11 36007634 36007930 -114775623 - AluSp SINE Alu -15 298 1 1776 120 75 0 chr11 36008519 36008785 -114774768 + AluSx SINE Alu 14 299 -13 252 245 19 47 chr11 36008985 36009091 -114774462 + L1P LINE L1 4910 5012 -1134 22 70 0 0 chr11 36009147 36009190 -114774363 + AT_rich Low_complexity Low_complexity 1 43 0 303 267 56 11 chr11 36009259 36009349 -114774204 + L1ME4a LINE L1 5320 5413 -708 497 215 180 31 chr11 36009478 36009706 -114773847 + L1ME4a LINE L1 5653 5914 -207 27 0 0 0 chr11 36010006 36010033 -114773520 + AT_rich Low_complexity Low_complexity 1 27 0 360 152 136 0 chr11 36010160 36010226 -114773327 - MER2 DNA MER2_type -1 344 270 1052 172 30 0 chr11 36010280 36010449 -114773104 - MER2 DNA MER2_type -171 174 1 1929 138 7 0 chr11 36010673 36010949 -114772604 - AluJo SINE Alu -13 299 22 537 250 62 67 chr11 36011292 36011516 -114772037 + L2 LINE L2 3085 3307 -6 2342 96 0 0 chr11 36011684 36011987 -114771566 - AluSx SINE Alu -2 310 8 240 130 0 22 chr11 36011991 36012037 -114771516 + MLT1K LTR MaLR 514 558 -30 197 43 0 0 chr11 36012094 36012117 -114771436 + (A)n Simple_repeat Simple_repeat 1 23 0 2309 85 0 7 chr11 36012121 36012428 -114771125 + AluSx SINE Alu 1 305 -7 315 317 122 72 chr11 36013020 36013628 -114769925 - L1M2 LINE L1 -5551 1298 661 701 123 38 0 chr11 36015371 36015477 -114768076 - L1PA8 LINE L1 -13 6159 6050 2272 87 0 0 chr11 36015498 36015785 -114767768 + AluSq SINE Alu 1 287 -26 797 235 125 28 chr11 36016166 36016455 -114767098 - L2 LINE L2 -5 3308 2992 402 235 217 0 chr11 36016940 36017055 -114766498 + MIR SINE MIR 110 249 -13 1841 132 45 0 chr11 36017313 36017600 -114765953 - AluSx SINE Alu -12 300 1 2626 145 214 20 chr11 36017708 36018254 -114765299 + MER39B LTR ERV1 1 652 -1 228 270 149 0 chr11 36018308 36018382 -114765171 + L2 LINE L2 3229 3313 0 729 266 100 64 chr11 36018401 36018935 -114764618 - L1ME3A LINE L1 -60 6110 5533 2252 101 0 23 chr11 36018935 36019243 -114764310 - AluSg SINE Alu -8 302 2 729 266 100 64 chr11 36019243 36019456 -114764097 - L1ME3A LINE L1 -637 5533 5329 498 257 193 9 chr11 36020833 36020958 -114762595 + MIR SINE MIR 3 104 -158 2128 100 10 3 chr11 36020958 36021257 -114762296 + AluSg SINE Alu 1 301 -9 498 257 193 9 chr11 36021257 36021349 -114762204 + MIR SINE MIR 104 260 -2 21 36 0 0 chr11 36021365 36021393 -114762160 + AT_rich Low_complexity Low_complexity 1 28 0 2403 74 3 0 chr11 36021475 36021771 -114761782 - AluSp SINE Alu -16 297 1 26 0 0 0 chr11 36022238 36022264 -114761289 + AT_rich Low_complexity Low_complexity 1 26 0 649 272 105 3 chr11 36022459 36022685 -114760868 - MIR SINE MIR -17 245 3 412 186 85 47 chr11 36022746 36022875 -114760678 + L1ME4a LINE L1 5942 6075 -46 896 202 0 23 chr11 36023172 36023345 -114760208 + AluJb SINE Alu 129 297 -15 2357 92 7 0 chr11 36024014 36024308 -114759245 - AluSx SINE Alu -16 296 1 1561 268 141 16 chr11 36024457 36025287 -114758266 + L2 LINE L2 2369 3311 -2 506 315 155 59 chr11 36026143 36026304 -114757249 - L2 LINE L2 -815 2499 2355 4014 185 66 22 chr11 36026304 36027195 -114756358 + MER63C DNA MER1_type 1 930 0 506 315 155 59 chr11 36027195 36027276 -114756277 - L2 LINE L2 -959 2355 2283 2185 129 0 0 chr11 36027276 36027570 -114755983 + AluSx SINE Alu 3 296 -16 506 315 155 59 chr11 36027570 36028041 -114755512 - L2 LINE L2 -1031 2283 1716 1541 186 16 29 chr11 36028718 36029030 -114754523 - AluJo SINE Alu 0 312 5 2226 123 0 7 chr11 36029084 36029394 -114754159 - AluSg SINE Alu -2 308 1 1394 167 61 19 chr11 36029753 36030017 -114753536 + AluJo SINE Alu 31 305 -7 584 220 145 6 chr11 36030230 36030389 -114753164 + MIR SINE MIR 40 220 -42 2249 97 28 0 chr11 36030619 36030909 -114752644 - AluSq SINE Alu -15 298 1 1407 128 20 0 chr11 36031692 36031896 -114751657 - AluJb SINE Alu -18 294 87 310 237 140 11 chr11 36031962 36032055 -114751498 + Charlie7 DNA MER1_type 2506 2610 -2 1662 149 82 3 chr11 36032199 36032481 -114751072 + AluJb SINE Alu 1 304 -8 514 254 81 48 chr11 36032522 36032731 -114750822 + MIR SINE MIR 13 228 -34 1060 117 0 155 chr11 36034125 36034338 -114749215 - AluSx SINE Alu -132 180 1 1299 210 84 54 chr11 36034338 36034930 -114748623 - L1ME LINE L1 -4860 1220 628 819 176 14 0 chr11 36034953 36035095 -114748458 - FRAM SINE Alu -13 163 20 1828 246 71 57 chr11 36035104 36035722 -114747831 - L1ME LINE L1 -5443 627 1 1770 159 10 17 chr11 36036151 36036446 -114747107 + AluJb SINE Alu 1 293 -19 2272 112 3 6 chr11 36036859 36037172 -114746381 - AluSx SINE Alu 0 312 1 257 233 33 17 chr11 36038765 36038825 -114744728 + MER66A LTR ERV1 277 337 -141 617 262 188 41 chr11 36038995 36039357 -114744196 - L1ME4a LINE L1 -205 5916 5502 2058 112 14 0 chr11 36039444 36039731 -114743822 + AluSg SINE Alu 1 291 -19 470 250 37 37 chr11 36039803 36039967 -114743586 + MIR SINE MIR 98 261 -1 1039 170 32 46 chr11 36040012 36040230 -114743323 + MER20 DNA MER1_type 1 215 -4 674 256 118 0 chr11 36040394 36040605 -114742948 + L1MC4 LINE L1 7807 8042 0 1613 168 26 23 chr11 36040742 36040920 -114742633 - AluJo SINE Alu -2 310 129 2182 130 3 3 chr11 36040920 36041227 -114742326 - AluSx SINE Alu -5 307 1 1613 168 26 23 chr11 36041227 36041357 -114742196 - AluJo SINE Alu -183 129 1 2125 98 0 14 chr11 36041359 36041669 -114741884 - AluY SINE Alu 0 306 1 23 54 0 0 chr11 36041762 36041799 -114741754 + AT_rich Low_complexity Low_complexity 1 37 0 735 141 22 37 chr11 36041806 36041941 -114741612 + AluJb SINE Alu 2 134 -178 432 168 56 56 chr11 36041970 36042095 -114741458 + L1ME4a LINE L1 5997 6121 0 2313 85 3 26 chr11 36042498 36042805 -114740748 + AluSc SINE Alu 1 300 -9 2203 106 0 3 chr11 36043036 36043319 -114740234 - AluSq SINE Alu -31 282 1 238 320 0 13 chr11 36043319 36043365 -114740188 - AluSp SINE Alu -168 135 91 383 305 103 11 chr11 36044145 36044319 -114739234 + L2 LINE L2 2155 2344 -970 26 0 0 0 chr11 36044601 36044627 -114738926 + AT_rich Low_complexity Low_complexity 1 26 0 2294 98 0 19 chr11 36044652 36044959 -114738594 + AluSg SINE Alu 9 309 -1 453 298 104 27 chr11 36045183 36045482 -114738071 - L2 LINE L2 -2 3311 2990 21 0 0 0 chr11 36045871 36045892 -114737661 + AT_rich Low_complexity Low_complexity 1 21 0 2089 127 0 10 chr11 36045894 36046193 -114737360 + AluSx SINE Alu 1 296 -16 723 284 88 45 chr11 36046290 36046776 -114736777 + L1ME4a LINE L1 5520 6026 -95 937 149 98 0 chr11 36047253 36047427 -114736126 - AluJb SINE Alu -1 311 121 1992 147 0 3 chr11 36047530 36047829 -114735724 + AluSx SINE Alu 10 307 -5 2075 136 0 28 chr11 36047858 36048175 -114735378 + AluSx SINE Alu 1 308 -4 275 282 160 38 chr11 36048510 36048641 -114734912 - L2 LINE L2 -2 3270 3124 2459 64 3 0 chr11 36048969 36049267 -114734286 + AluSc SINE Alu 1 299 -10 2304 104 0 0 chr11 36049638 36049927 -114733626 + AluSq SINE Alu 1 289 -24 2318 85 17 0 chr11 36049938 36050233 -114733320 + AluSq SINE Alu 1 300 -13 2054 126 0 3 chr11 36050337 36050650 -114732903 - AluY SINE Alu 0 312 1 1650 165 40 7 chr11 36051062 36051334 -114732219 + AluJo SINE Alu 1 281 -31 966 77 0 0 chr11 36051348 36051465 -114732088 + AluSq/x SINE Alu 1 117 -196 189 132 0 0 chr11 36051471 36051509 -114732044 + (A)n Simple_repeat Simple_repeat 1 38 0 3346 185 78 14 chr11 36052190 36052930 -114730623 - L1MB7 LINE L1 -41 6143 5356 1381 180 0 4 chr11 36052931 36053159 -114730394 - AluJb SINE Alu 0 312 86 403 168 10 10 chr11 36053211 36053312 -114730241 + GA-rich Low_complexity Low_complexity 3 103 0 3880 171 151 67 chr11 36053320 36053852 -114729701 - L1MB7 LINE L1 -774 5372 4886 2331 86 13 7 chr11 36053852 36054156 -114729397 + AluSg SINE Alu 1 306 -4 3880 171 151 67 chr11 36054156 36054341 -114729212 - L1MB7 LINE L1 -1260 4886 4718 4390 61 44 10 chr11 36054341 36054928 -114728625 - L1PB1 LINE L1 -7 6144 5538 3880 171 151 67 chr11 36054928 36055409 -114728144 - L1MB7 LINE L1 -1428 4718 4072 1817 166 58 0 chr11 36055569 36055895 -114727658 - MER47A DNA MER2_type 0 366 22 2474 87 0 3 chr11 36055903 36056213 -114727340 + AluSg SINE Alu 1 309 -1 401 212 71 0 chr11 36056329 36056414 -114727139 + MER5A DNA MER1_type 61 151 -38 328 194 71 20 chr11 36056330 36056428 -114727125 - MER5A DNA MER1_type -50 139 37 * 1793 170 0 41 chr11 36056834 36057151 -114726402 + AluJo SINE Alu 1 304 -8 229 211 0 0 chr11 36057214 36057266 -114726287 + T-rich Low_complexity Low_complexity 1 52 0 1914 123 3 91 chr11 36057277 36057619 -114725934 + AluSx SINE Alu 1 312 0 2440 90 3 0 chr11 36057633 36057934 -114725619 + AluSx SINE Alu 2 303 -9 1812 174 0 13 chr11 36058079 36058384 -114725169 - AluJo SINE Alu -11 301 1 594 266 129 46 chr11 36058400 36058808 -114724745 - L1ME3A LINE L1 -220 5950 5507 500 237 0 0 chr11 36059224 36059317 -114724236 - FLAM_A SINE Alu -45 97 5 2116 112 14 10 chr11 36059529 36059825 -114723728 + AluSx SINE Alu 11 307 -5 234 0 0 0 chr11 36060583 36060609 -114722944 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 494 141 0 0 chr11 36060623 36060694 -114722859 - AluJ/FLAM SINE Alu -240 72 2 1543 172 48 7 chr11 36062310 36062583 -114720970 + AluJo SINE Alu 1 284 -28 23 0 0 0 chr11 36062583 36062606 -114720947 + AT_rich Low_complexity Low_complexity 1 23 0 2239 100 0 3 chr11 36062989 36063278 -114720275 + AluSq SINE Alu 9 296 -17 878 152 0 0 chr11 36063587 36063725 -114719828 + FLAM_C SINE Alu 6 143 0 1849 136 35 3 chr11 36063974 36064260 -114719293 + AluSx SINE Alu 1 295 -17 1408 136 30 30 chr11 36064690 36064867 -114718686 - MER46A DNA MER2_type -2495 236 57 2037 115 0 30 chr11 36064867 36065172 -114718381 + AluJb SINE Alu 1 296 -16 1408 136 30 30 chr11 36065172 36065230 -114718323 - MER46A DNA MER2_type -2673 58 1 2050 71 0 8 chr11 36065447 36065699 -114717854 + AluY SINE Alu 42 291 -20 501 263 98 87 chr11 36066106 36066544 -114717009 - L1MEd LINE L1 -5284 835 393 569 277 121 9 chr11 36066817 36067048 -114716505 + MIR SINE MIR 6 262 0 1662 72 36 84 chr11 36069477 36069727 -114713826 - AluSg SINE Alu -10 300 63 815 161 15 96 chr11 36070030 36070086 -114713467 - MER5A DNA MER1_type -6 183 124 1867 165 3 0 chr11 36070086 36070383 -114713170 + AluJb SINE Alu 5 302 -10 815 161 15 96 chr11 36070383 36070525 -114713028 - MER5A DNA MER1_type -65 124 1 21 0 0 0 chr11 36070724 36070745 -114712808 + AT_rich Low_complexity Low_complexity 1 21 0 645 214 10 85 chr11 36073332 36073410 -114710143 + MER5A DNA MER1_type 1 83 -106 1999 133 0 31 chr11 36073410 36073732 -114709821 + AluJb SINE Alu 1 312 0 645 214 10 85 chr11 36073732 36073854 -114709699 + MER5A DNA MER1_type 83 186 -3 387 331 19 0 chr11 36074746 36074903 -114708650 + MIR3 SINE MIR 43 202 -6 596 264 31 0 chr11 36074971 36075134 -114708419 - LTR16A1 LTR ERVL 0 457 290 22 35 0 0 chr11 36075725 36075754 -114707799 + AT_rich Low_complexity Low_complexity 1 29 0 717 278 21 0 chr11 36076813 36077004 -114706549 - MIR SINE MIR -48 214 20 1747 158 43 4 chr11 36079285 36079563 -114703990 + AluJb SINE Alu 1 289 -23 1442 119 0 5 chr11 36079576 36079777 -114703776 - AluSq SINE Alu -11 302 103 249 33 0 0 chr11 36082414 36082444 -114701109 + (CCG)n Simple_repeat Simple_repeat 3 32 0 31 26 0 0 chr11 36082556 36082594 -114700959 + GC_rich Low_complexity Low_complexity 1 38 0 207 100 0 0 chr11 36082992 36083022 -114700531 + (T)n Simple_repeat Simple_repeat 1 30 0 369 0 0 0 chr11 36084134 36084175 -114699378 + (TG)n Simple_repeat Simple_repeat 2 42 0 1685 128 114 29 chr11 36084242 36084523 -114699030 + AluJo SINE Alu 1 305 -7 291 292 42 10 chr11 36084705 36084801 -114698752 + MIR SINE MIR 12 110 -152 486 205 64 70 chr11 36084824 36084914 -114698639 + MIR SINE MIR 31 122 -140 2150 74 0 87 chr11 36084914 36085252 -114698301 + AluSx SINE Alu 1 311 0 486 205 64 70 chr11 36085252 36085331 -114698222 + MIR SINE MIR 122 200 -62 2306 95 0 7 chr11 36085689 36085995 -114697558 - AluSx SINE Alu -8 304 1 353 256 0 0 chr11 36087267 36087349 -114696204 + MIR SINE MIR 64 145 -117 464 299 11 17 chr11 36088022 36088196 -114695357 + MIR SINE MIR 86 258 -4 2308 112 0 0 chr11 36088228 36088532 -114695021 + AluSq SINE Alu 1 304 -9 1170 260 68 44 chr11 36088842 36089363 -114694190 + L2 LINE L2 2776 3311 -2 660 306 57 4 chr11 36089663 36089911 -114693642 + MIR SINE MIR 2 262 0 2270 122 0 0 chr11 36090393 36090697 -114692856 - AluSx SINE Alu -4 308 5 219 270 144 45 chr11 36090971 36091082 -114692471 + MIR3 SINE MIR 87 208 0 507 314 92 4 chr11 36091311 36091550 -114692003 + MIR SINE MIR 3 262 0 2720 176 22 24 chr11 36092027 36092283 -114691270 + L1MB3 LINE L1 5016 5271 -912 1802 95 29 47 chr11 36092283 36092557 -114690996 + AluSx SINE Alu 1 269 -43 2720 176 22 24 chr11 36092557 36093087 -114690466 + L1MB3 LINE L1 5271 5795 -388 373 106 0 71 chr11 36093089 36093202 -114690351 + (TA)n Simple_repeat Simple_repeat 1 105 0 1748 180 54 11 chr11 36093206 36093579 -114689974 + L1MB3 LINE L1 5782 6170 -13 207 114 0 0 chr11 36094671 36094706 -114688847 + (TGAA)n Simple_repeat Simple_repeat 2 36 0 775 259 98 13 chr11 36095557 36095793 -114687760 - MIR SINE MIR 0 262 7 420 278 102 40 chr11 36095875 36096051 -114687502 + L2 LINE L2 3034 3220 -93 411 307 53 13 chr11 36096128 36096278 -114687275 + MER117 DNA MER1_type 40 195 -2 184 261 0 62 chr11 36096494 36096559 -114686994 - L2 LINE L2 -214 3058 2998 * 491 308 59 14 chr11 36096556 36096777 -114686776 - MIR SINE MIR -15 247 17 2186 101 0 7 chr11 36098774 36099071 -114684482 - AluSq SINE Alu -18 295 1 1714 161 34 7 chr11 36100434 36100598 -114682955 - AluJb SINE Alu -12 300 123 199 53 26 26 chr11 36100598 36100636 -114682917 + (TTTG)n Simple_repeat Simple_repeat 3 40 0 1714 161 34 7 chr11 36100636 36100763 -114682790 - AluJb SINE Alu -189 123 1 1049 252 131 24 chr11 36101199 36101767 -114681786 + L2 LINE L2 2685 3313 0 405 304 96 0 chr11 36101765 36101900 -114681653 - MIR SINE MIR -95 167 20 * 220 274 86 68 chr11 36101911 36102028 -114681525 - L2 LINE L2 -850 2464 2346 428 274 49 0 chr11 36102080 36102182 -114681371 - L2 LINE L2 -25 3247 3141 238 297 110 17 chr11 36102293 36102411 -114681142 - L2 LINE L2 -3 3269 3141 385 317 16 0 chr11 36102430 36102553 -114681000 - L2 LINE L2 -1 3312 3188 3237 126 46 15 chr11 36102554 36103100 -114680453 + L1PB4 LINE L1 5507 6069 -87 433 248 0 0 chr11 36103129 36103230 -114680323 + L1PB4 LINE L1 6043 6143 -13 2046 124 10 0 chr11 36103235 36103541 -114680012 - AluSx SINE Alu -3 309 1 349 198 168 10 chr11 36103638 36103739 -114679814 - MIR SINE MIR -29 233 117 306 317 19 0 chr11 36103908 36104012 -114679541 + MIR SINE MIR 151 256 -6 423 38 0 0 chr11 36104236 36104289 -114679264 + (CA)n Simple_repeat Simple_repeat 2 54 0 473 319 31 12 chr11 36105371 36105534 -114678019 + MIR SINE MIR 47 212 -50 278 284 15 0 chr11 36106262 36106329 -114677224 + L2 LINE L2 3186 3253 -19 180 281 105 0 chr11 36107703 36107760 -114675793 - L2 LINE L2 -524 2790 2728 1938 125 7 7 chr11 36108041 36108344 -114675209 - AluSq SINE Alu -10 303 1 433 231 218 0 chr11 36108372 36108528 -114675025 + MIR SINE MIR 48 237 -25 21 0 0 0 chr11 36108570 36108591 -114674962 + AT_rich Low_complexity Low_complexity 1 21 0 283 133 44 0 chr11 36109264 36109309 -114674244 - L2 LINE L2 0 3272 3226 261 178 0 0 chr11 36109538 36109583 -114673970 + MIR3 SINE MIR 129 173 -35 961 175 13 61 chr11 36109886 36110114 -114673439 - AluJo SINE Alu -11 301 85 346 233 160 20 chr11 36110228 36110378 -114673175 + MIR3 SINE MIR 26 196 -12 653 261 14 21 chr11 36110916 36111058 -114672495 - MER91A DNA MER1_type 0 196 56 1029 123 19 95 chr11 36111159 36111288 -114672265 - MER3 DNA MER1_type 0 209 101 2189 113 0 0 chr11 36111288 36111598 -114671955 + AluSx SINE Alu 1 310 -2 1029 123 19 95 chr11 36111598 36111679 -114671874 - MER3 DNA MER1_type -108 101 15 290 282 94 79 chr11 36111841 36112118 -114671435 + L2 LINE L2 2935 3215 -57 321 301 55 20 chr11 36112310 36112456 -114671097 - MIR SINE MIR -89 173 23 576 309 5 48 chr11 36113809 36114016 -114669537 + MIR SINE MIR 2 199 -63 2008 120 0 16 chr11 36114237 36114553 -114669000 + AluSx SINE Alu 1 311 -1 538 291 27 7 chr11 36114890 36115038 -114668515 + MLT1K LTR MaLR 69 219 -369 839 229 68 44 chr11 36115051 36115300 -114668253 + MLT1K LTR MaLR 330 584 -4 542 15 15 0 chr11 36115611 36115678 -114667875 + (TCTA)n Simple_repeat Simple_repeat 2 69 0 698 319 75 12 chr11 36115889 36116234 -114667319 - MLT1J1 LTR MaLR 0 446 80 820 147 89 13 chr11 36116238 36116395 -114667158 + FRAM SINE Alu 1 168 -8 412 204 11 34 chr11 36116397 36116485 -114667068 - MLT1J1 LTR MaLR -360 86 1 198 118 0 0 chr11 36118095 36118129 -114665424 + (TG)n Simple_repeat Simple_repeat 1 34 0 515 286 54 0 chr11 36118361 36118508 -114665045 - L2 LINE L2 -1 3312 3158 2540 97 102 10 chr11 36118527 36118918 -114664635 + MSTA LTR MaLR 1 427 -1 416 269 25 17 chr11 36118922 36119041 -114664512 - L2 LINE L2 -7 3306 3187 323 268 73 49 chr11 36120048 36120212 -114663341 - MIR SINE MIR -56 206 39 698 224 64 65 chr11 36120315 36120561 -114662992 + MIR SINE MIR 2 241 -21 266 261 254 29 chr11 36120641 36120948 -114662605 - L1ME4a LINE L1 -39 6082 5707 2093 109 3 0 chr11 36120948 36121242 -114662311 + AluSq SINE Alu 13 307 -6 30 0 0 0 chr11 36121246 36121276 -114662277 + AT_rich Low_complexity Low_complexity 1 30 0 302 125 0 0 chr11 36121276 36121316 -114662237 - Alu SINE Alu -259 40 1 594 267 35 23 chr11 36121317 36121489 -114662064 + L1ME3A LINE L1 5478 5651 -511 1408 213 54 30 chr11 36121494 36121677 -114661876 - MER58B DNA MER1_type -2079 341 145 1831 144 0 29 chr11 36121677 36121990 -114661563 - AluJb SINE Alu -8 304 1 1408 213 54 30 chr11 36121990 36122139 -114661414 - MER58B DNA MER1_type -2275 145 1 573 274 51 29 chr11 36122152 36122327 -114661226 + MER5A DNA MER1_type 9 187 -2 486 224 60 101 chr11 36122346 36122577 -114660976 + L1ME3A LINE L1 5665 5854 -310 1451 159 4 12 chr11 36122577 36122829 -114660724 + AluJo SINE Alu 42 291 -21 486 224 60 101 chr11 36122829 36122917 -114660636 + L1ME3A LINE L1 5854 5944 -220 601 224 54 54 chr11 36122981 36123186 -114660367 + L1ME3A LINE L1 5965 6169 -1 609 242 174 11 chr11 36123931 36124121 -114659432 + MLT1J LTR MaLR 22 242 -269 1565 166 69 0 chr11 36124197 36124474 -114659079 - AluJb SINE Alu -16 296 1 231 36 0 0 chr11 36124494 36124522 -114659031 + (GAAAA)n Simple_repeat Simple_repeat 2 29 0 359 230 0 0 chr11 36124522 36124596 -114658957 + MLT1J LTR MaLR 438 511 0 225 254 0 0 chr11 36124608 36124663 -114658890 + L1ME4a LINE L1 5718 5772 -349 337 272 52 108 chr11 36124677 36124909 -114658644 - L2 LINE L2 0 3313 3095 183 315 27 0 chr11 36125010 36125083 -114658470 + L2 LINE L2 3239 3313 0 315 205 0 13 chr11 36125102 36125180 -114658373 + L1ME4a LINE L1 6044 6120 -1 249 169 17 34 chr11 36126038 36126097 -114657456 - MIR SINE MIR -89 173 116 2012 191 54 54 chr11 36126248 36126294 -114657259 + MLT1D LTR MaLR 1 46 -459 2412 53 0 7 chr11 36126294 36126594 -114656959 + AluY SINE Alu 1 298 -13 2012 191 54 54 chr11 36126594 36127051 -114656502 + MLT1D LTR MaLR 45 504 -1 1656 171 0 16 chr11 36127354 36127658 -114655895 + AluJb SINE Alu 2 300 -12 293 231 10 106 chr11 36127861 36127899 -114655654 + MIR SINE MIR 168 208 -54 2151 112 0 6 chr11 36127899 36128212 -114655341 + AluSx SINE Alu 1 311 -1 293 231 10 106 chr11 36128212 36128277 -114655276 + MIR SINE MIR 208 261 -1 637 186 211 0 chr11 36128348 36128504 -114655049 - MER5A DNA MER1_type 0 189 1 483 190 13 0 chr11 36128533 36128612 -114654941 + L2 LINE L2 3234 3313 0 738 233 116 23 chr11 36130135 36130245 -114653308 + MIR SINE MIR 28 126 -136 2616 87 34 14 chr11 36130245 36130602 -114652951 + THE1B LTR MaLR 1 364 0 738 233 116 23 chr11 36130602 36130706 -114652847 + MIR SINE MIR 126 262 0 291 345 118 0 chr11 36130781 36130891 -114652662 - MIR3 SINE MIR -15 193 71 551 243 38 47 chr11 36131345 36131550 -114652003 - L1MC5 LINE L1 -48 7913 7709 1982 96 10 10 chr11 36131550 36131841 -114651712 - AluSg SINE Alu -19 291 1 551 243 38 47 chr11 36131841 36131870 -114651683 - L1MC5 LINE L1 -252 7709 7681 2135 120 0 0 chr11 36131872 36132173 -114651380 + AluSx SINE Alu 1 301 -11 393 215 82 6 chr11 36132278 36132436 -114651117 - L1ME4a LINE L1 -239 5882 5713 766 260 62 121 chr11 36132460 36132990 -114650563 + MLT1J LTR MaLR 9 507 -4 227 295 38 95 chr11 36133009 36133219 -114650334 + L2 LINE L2 3116 3313 0 199 359 0 0 chr11 36133238 36133302 -114650251 + MIR SINE MIR 83 146 -62 209 296 56 28 chr11 36133421 36133529 -114650024 - L2 LINE L2 -376 2938 2828 1968 147 0 0 chr11 36133552 36133845 -114649708 - AluJb SINE Alu -19 293 1 272 264 161 0 chr11 36133891 36133978 -114649575 + MIR SINE MIR 162 262 0 2984 151 9 52 chr11 36134333 36134387 -114649166 + L1MB5 LINE L1 5391 5446 -728 1788 149 12 16 chr11 36134387 36134709 -114648844 + L1MC1 LINE L1 6013 6333 0 1841 50 12 8 chr11 36134709 36134966 -114648587 + L1PA7 LINE L1 5896 6157 0 2984 151 9 52 chr11 36134966 36135574 -114647979 + L1MB5 LINE L1 5444 5994 -180 1684 180 25 0 chr11 36135822 36136138 -114647415 + MER33 DNA MER1_type 1 324 0 446 234 0 57 chr11 36137668 36137809 -114645744 - MIR3 SINE MIR -30 178 46 1828 220 149 31 chr11 36138461 36138687 -114644866 + MLT1G LTR MaLR 12 210 -380 2053 108 21 0 chr11 36138687 36138974 -114644579 + AluSx SINE Alu 1 293 -19 1828 220 149 31 chr11 36138974 36139265 -114644288 + MLT1G LTR MaLR 210 590 0 229 167 62 0 chr11 36139613 36139661 -114643892 - MLT1K LTR MaLR -11 577 527 852 281 74 53 chr11 36140071 36140501 -114643052 - MLT1H LTR MaLR -110 439 1 834 239 73 36 chr11 36140611 36140858 -114642695 + MIR SINE MIR 7 262 0 520 286 113 0 chr11 36141094 36141307 -114642246 + L1ME4a LINE L1 5657 5893 -228 1823 219 82 108 chr11 36141516 36141840 -114641713 + L1ME3A LINE L1 5374 5705 -465 1567 174 25 0 chr11 36141840 36142115 -114641438 + AluJo SINE Alu 1 282 -30 216 0 0 0 chr11 36142118 36142142 -114641411 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1823 219 82 108 chr11 36142142 36142557 -114640996 + L1ME3A LINE L1 5707 6097 -73 1908 123 36 0 chr11 36142557 36142858 -114640695 + AluSq SINE Alu 1 312 -1 1823 219 82 108 chr11 36142858 36142926 -114640627 + L1ME3A LINE L1 6097 6165 -5 3293 103 63 64 chr11 36144709 36145292 -114638261 - LTR10A LTR ERV1 -2 631 1 338 373 19 19 chr11 36146098 36146259 -114637294 - L2 LINE L2 -2 3270 3110 21 36 0 0 chr11 36146461 36146489 -114637064 + AT_rich Low_complexity Low_complexity 1 28 0 219 260 91 13 chr11 36146491 36146568 -114636985 - L3b LINE CR1 -290 1293 1211 259 319 14 0 chr11 36147876 36147948 -114635605 - L2 LINE L2 -56 3216 3144 284 355 81 0 chr11 36148066 36148190 -114635363 + MIR3 SINE MIR 33 166 -42 1173 249 46 18 chr11 36148193 36148582 -114634971 - LTR16B LTR ERVL -3 461 62 332 326 62 8 chr11 36149068 36149197 -114634356 + MIR SINE MIR 32 167 -95 1266 151 16 69 chr11 36149199 36149477 -114634076 + AluJb SINE Alu 64 312 0 314 266 0 88 chr11 36149477 36149590 -114633963 + MIR SINE MIR 158 260 -2 183 302 5 111 chr11 36149936 36150125 -114633428 - L2 LINE L2 -439 2875 2707 183 42 0 0 chr11 36150851 36150875 -114632678 + (TTG)n Simple_repeat Simple_repeat 2 25 0 1638 183 4 4 chr11 36150879 36151158 -114632395 - AluJb SINE Alu -33 279 1 932 218 30 42 chr11 36151308 36151570 -114631983 - MIR SINE MIR -1 261 3 289 278 175 0 chr11 36151665 36151762 -114631791 + L2 LINE L2 3155 3268 -4 1366 169 81 153 chr11 36152002 36152477 -114631076 + MLT1D LTR MaLR 1 435 -70 2205 99 0 0 chr11 36152477 36152783 -114630770 - AluSq SINE Alu 0 306 1 1366 169 81 153 chr11 36152783 36152850 -114630703 + MLT1D LTR MaLR 435 505 0 184 282 0 0 chr11 36152865 36152904 -114630649 - L2 LINE L2 -77 3236 3198 761 248 52 17 chr11 36153081 36153311 -114630242 - MIR SINE MIR -17 245 8 2033 122 7 0 chr11 36153572 36153876 -114629677 + AluSx SINE Alu 3 308 0 590 239 149 11 chr11 36154196 36154384 -114629169 - MIR SINE MIR -26 236 23 1822 156 13 19 chr11 36155236 36155543 -114628010 + AluJo SINE Alu 1 305 -7 2266 108 0 0 chr11 36156293 36156590 -114626963 - AluSx SINE Alu -14 298 2 797 144 7 62 chr11 36156591 36156737 -114626816 - FLAM_C SINE Alu -2 141 4 563 269 127 5 chr11 36156850 36157047 -114626506 + MIR SINE MIR 42 262 0 527 375 18 13 chr11 36157176 36157400 -114626153 - L3 LINE CR1 -133 1444 1220 456 104 0 0 chr11 36158146 36158213 -114625340 + (TCCA)n Simple_repeat Simple_repeat 4 70 0 507 204 14 63 chr11 36158215 36158357 -114625196 - L2 LINE L2 -4 3268 3134 233 258 0 32 chr11 36158554 36158616 -114624937 + L2 LINE L2 3254 3313 0 295 272 136 19 chr11 36159264 36159367 -114624186 - MIR SINE MIR -5 257 143 2630 40 0 0 chr11 36159391 36159689 -114623864 - AluYa5 SINE Alu -13 298 1 1081 197 25 29 chr11 36159693 36159932 -114623621 + MLT2B1 LTR ERVL 8 245 -169 486 0 0 0 chr11 36160019 36160073 -114623480 + (TAGA)n Simple_repeat Simple_repeat 4 57 0 2100 85 46 0 chr11 36160666 36160949 -114622604 - AluSg SINE Alu -13 297 2 1804 108 8 8 chr11 36161054 36161312 -114622241 - L1PA13 LINE L1 -5 6158 5901 233 174 0 0 chr11 36161366 36161412 -114622141 - LTR66 LTR ERVL -161 449 404 309 51 0 0 chr11 36161551 36161590 -114621963 + (TTCA)n Simple_repeat Simple_repeat 1 39 0 1110 248 45 99 chr11 36161594 36162136 -114621417 - L2 LINE L2 -8 3305 2798 737 316 88 17 chr11 36162738 36163234 -114620319 - L2 LINE L2 -11 3302 2771 314 256 68 8 chr11 36163365 36163482 -114620071 - MIR SINE MIR -75 187 64 2381 154 77 23 chr11 36163549 36163641 -114619912 + L1M4 LINE L1 3370 3456 -2690 2070 138 7 0 chr11 36163641 36163945 -114619608 + AluSx SINE Alu 1 306 -6 2381 154 77 23 chr11 36163945 36164332 -114619221 + L1M4 LINE L1 3456 3875 -2271 24 53 0 0 chr11 36164562 36164600 -114618953 + AT_rich Low_complexity Low_complexity 1 38 0 564 163 22 0 chr11 36164889 36164981 -114618572 - AluJo SINE Alu -176 136 43 235 224 0 0 chr11 36165705 36165754 -114617799 + Alu SINE Alu 250 298 -3 1018 253 48 11 chr11 36165783 36165873 -114617680 + L1M4 LINE L1 4957 5042 -1104 1732 191 0 9 chr11 36165873 36166188 -114617365 + AluJo SINE Alu 1 312 0 1018 253 48 11 chr11 36166188 36166449 -114617104 + L1M4 LINE L1 5042 5321 -825 953 143 77 3 chr11 36166943 36167128 -114616425 - THE1C LTR MaLR -208 167 1 254 158 0 0 chr11 36167132 36167170 -114616383 + LTR39 LTR ERV1 739 776 -7 1778 235 82 67 chr11 36167230 36167899 -114615654 + LTR8A LTR ERV1 34 712 -15 1123 135 18 42 chr11 36168242 36168428 -114615125 + MLT1B LTR MaLR 1 176 -198 1293 208 47 11 chr11 36168428 36168702 -114614851 + AluSq SINE Alu 1 284 -19 1123 135 18 42 chr11 36168702 36168741 -114614812 + MLT1B LTR MaLR 176 214 -160 259 270 0 0 chr11 36168752 36168815 -114614738 + MLT1B LTR MaLR 170 232 -158 21 0 0 0 chr11 36169688 36169709 -114613844 + AT_rich Low_complexity Low_complexity 1 21 0 300 221 0 0 chr11 36170552 36170629 -114612924 + (CA)n Simple_repeat Simple_repeat 2 78 0 1295 112 103 28 chr11 36171898 36172112 -114611441 + MER30 DNA MER1_type 1 230 0 258 263 40 112 chr11 36172364 36172516 -114611037 - LTR8A LTR ERV1 -16 711 571 353 289 169 20 chr11 36173082 36173283 -114610270 - L2 LINE L2 0 3313 3083 353 331 159 26 chr11 36173303 36173454 -114610099 - MER5A DNA MER1_type -6 183 13 440 283 136 29 chr11 36173460 36173728 -114609825 - L2 LINE L2 -275 3038 2740 314 241 8 65 chr11 36173735 36173776 -114609777 - MLT2D LTR ERVL 0 414 414 438 101 0 0 chr11 36173776 36173845 -114609708 + (TG)n Simple_repeat Simple_repeat 2 70 0 314 241 8 65 chr11 36173845 36173914 -114609639 - MLT2D LTR ERVL 0 414 343 7605 143 8 45 chr11 36174578 36176008 -114607545 + L1P LINE L1 907 2284 -3862 2184 112 0 3 chr11 36176172 36176458 -114607095 - AluSx SINE Alu -27 285 1 307 324 65 7 chr11 36176809 36176948 -114606605 + L2 LINE L2 3167 3313 0 2164 187 65 47 chr11 36177059 36177658 -114605895 + LTR39 LTR ERV1 1 610 -173 240 140 0 20 chr11 36177797 36177847 -114605706 + L1MA8 LINE L1 6236 6284 -7 253 316 32 0 chr11 36179936 36180031 -114603522 - MIR SINE MIR -57 151 54 22 0 0 0 chr11 36182507 36182529 -114601024 + AT_rich Low_complexity Low_complexity 1 22 0 324 0 0 0 chr11 36182562 36182598 -114600955 + (GA)n Simple_repeat Simple_repeat 1 36 0 1431 219 11 0 chr11 36182599 36182873 -114600680 - AluJo SINE Alu -35 277 1 704 154 62 8 chr11 36183074 36183204 -114600349 - LTR8 LTR ERV1 -554 137 1 23 0 0 0 chr11 36183810 36183833 -114599720 + AT_rich Low_complexity Low_complexity 1 23 0 283 279 57 33 chr11 36184196 36184318 -114599235 + MIR SINE MIR 111 235 -27 4570 206 75 11 chr11 36184553 36185623 -114597930 - L1M2 LINE L1 -4499 2350 1213 247 343 39 39 chr11 36185928 36186030 -114597523 - L2 LINE L2 -23 3249 3148 204 319 199 0 chr11 36186177 36186318 -114597235 - L2 LINE L2 -300 2972 2804 2496 177 33 2 chr11 36186347 36186766 -114596787 + MSTB1 LTR MaLR 1 432 0 272 287 105 14 chr11 36187411 36187554 -114595999 + L1MC/D LINE L1 5625 5780 -2028 8744 74 5 3 chr11 36188603 36189761 -114593792 + L1P LINE L1 3620 4779 -1367 1484 119 0 0 chr11 36189866 36190068 -114593485 - AluSq SINE Alu -111 202 1 185 353 84 17 chr11 36190507 36190626 -114592927 - L2 LINE L2 -23 3249 3123 443 215 0 89 chr11 36190646 36190701 -114592852 + L1ME LINE L1 5435 5493 -677 1851 157 0 0 chr11 36190701 36190981 -114592572 + AluJb SINE Alu 1 280 -32 200 83 0 28 chr11 36190984 36191020 -114592533 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 443 215 0 89 chr11 36191020 36191095 -114592458 + L1ME LINE L1 5495 5557 -613 478 239 0 43 chr11 36191102 36191286 -114592267 + AluJo SINE Alu 1 176 -136 227 79 26 0 chr11 36191370 36191408 -114592145 + (TTTTC)n Simple_repeat Simple_repeat 2 40 0 1286 147 147 0 chr11 36193904 36194122 -114589431 + Tigger3(Golem) DNA MER2_type 2779 3028 -1 539 211 204 0 chr11 36194135 36194277 -114589276 + L1MB4 LINE L1 5477 5647 -533 2104 173 82 2 chr11 36194279 36194695 -114588858 - Tigger2 DNA MER2_type -3 2715 2267 469 132 15 0 chr11 36194680 36194748 -114588805 - Tigger2 DNA MER2_type -2649 69 1 * 2664 174 13 2 chr11 36194754 36195231 -114588322 + L1MB4 LINE L1 5651 6132 -48 9116 71 0 14 chr11 36195370 36196546 -114587007 - L1P LINE L1 -4930 1216 58 1955 92 19 45 chr11 36196704 36196988 -114586565 + L1PA7 LINE L1 5841 6118 -36 2287 79 7 16 chr11 36196988 36197292 -114586261 - AluY SINE Alu -9 302 2 1955 92 19 45 chr11 36197292 36197321 -114586232 + L1PA7 LINE L1 6118 6146 -8 24 0 0 0 chr11 36197645 36197669 -114585884 + AT_rich Low_complexity Low_complexity 1 24 0 3667 34 0 5 chr11 36197767 36198208 -114585345 - L1PA5 LINE L1 -8 6146 5708 1205 287 71 5 chr11 36198342 36198750 -114584803 - Zaphod DNA AcHobo -3552 479 45 688 275 110 14 chr11 36198868 36199086 -114584467 - MER69 DNA AcHobo -744 482 244 1059 268 76 5 chr11 36199227 36199780 -114583773 + MER69 DNA AcHobo 1461 2052 -474 25 90 0 0 chr11 36199833 36199900 -114583653 + AT_rich Low_complexity Low_complexity 1 67 0 1720 144 26 0 chr11 36200700 36201013 -114582540 + L1MA9 LINE L1 5991 6311 -1 324 210 116 80 chr11 36201078 36201216 -114582337 - L1ME LINE L1 -302 5819 5677 460 327 145 35 chr11 36201302 36201620 -114581933 - L2 LINE L2 0 3272 2920 265 392 26 10 chr11 36201787 36201981 -114581572 - L2 LINE L2 -632 2682 2486 544 368 135 18 chr11 36201990 36202666 -114580887 - L2 LINE L2 -1442 1872 1118 231 271 102 17 chr11 36202795 36202913 -114580640 - L2 LINE L2 -1218 2096 1969 534 272 235 14 chr11 36203214 36203427 -114580126 + MIR SINE MIR 3 262 0 697 197 8 0 chr11 36203610 36203732 -114579821 + FLAM_C SINE Alu 1 123 -20 25 31 0 0 chr11 36203732 36203764 -114579789 + AT_rich Low_complexity Low_complexity 1 32 0 895 211 19 31 chr11 36204630 36204891 -114578662 - MER2 DNA MER2_type -81 264 7 243 338 186 14 chr11 36205201 36205346 -114578207 + L2 LINE L2 3097 3266 -6 25 31 0 0 chr11 36205818 36205850 -114577703 + AT_rich Low_complexity Low_complexity 1 32 0 241 282 0 0 chr11 36206656 36206727 -114576826 - L1P5 LINE L1 -577 5577 5507 231 203 0 0 chr11 36208391 36208455 -114575098 + CT-rich Low_complexity Low_complexity 1 64 0 1562 199 11 4 chr11 36208571 36208842 -114574711 + AluJo SINE Alu 3 275 -37 261 75 0 0 chr11 36208842 36208882 -114574671 + (TCTA)n Simple_repeat Simple_repeat 4 43 0 333 62 0 0 chr11 36209027 36209075 -114574478 + (C)n Simple_repeat Simple_repeat 1 48 0 1119 268 24 0 chr11 36209293 36209632 -114573921 + L1 LINE L1 3911 4257 -1889 1189 235 46 26 chr11 36209704 36210125 -114573428 + MER66A LTR ERV1 164 478 0 806 226 92 14 chr11 36210126 36210494 -114573059 + L1 LINE L1 4295 4691 -1455 9040 48 3 1 chr11 36210622 36211813 -114571740 + L1P LINE L1 1455 2648 -3498 254 365 31 13 chr11 36211914 36212073 -114571480 + L2 LINE L2 2897 3058 -214 252 0 0 0 chr11 36212306 36212334 -114571219 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 1575 172 20 7 chr11 36212714 36213011 -114570542 + L1P3 LINE L1 10 310 -6151 805 134 76 6 chr11 36213996 36214153 -114569400 + Tigger3(Golem) DNA MER2_type 2588 2755 -274 1342 90 0 48 chr11 36214210 36214398 -114569155 - AluSq SINE Alu -134 179 1 276 189 0 0 chr11 36214398 36214451 -114569102 + AluSg/x SINE Alu 187 239 -61 1868 129 0 0 chr11 36214457 36214743 -114568810 + Tigger3(Golem) DNA MER2_type 2743 3028 -1 540 252 130 0 chr11 36214864 36214995 -114568558 - MIR SINE MIR -72 190 43 354 273 0 0 chr11 36215701 36215778 -114567775 + L2 LINE L2 3231 3307 -6 862 28 9 0 chr11 36216214 36216322 -114567231 - L1P2 LINE L1 -419 5736 5628 4382 157 38 45 chr11 36216350 36217444 -114566109 - L1MA6 LINE L1 -145 6155 5057 939 191 5 5 chr11 36217444 36217633 -114565920 + L1MA6 LINE L1 4887 5075 -1071 316 175 31 15 chr11 36217627 36217771 -114565782 - L1P LINE L1 -832 5314 5168 * 6950 57 10 0 chr11 36218009 36219764 -114563789 + L1PA6 LINE L1 4379 6152 -2 258 32 0 0 chr11 36221501 36221532 -114562021 + (TA)n Simple_repeat Simple_repeat 1 31 0 2246 98 7 3 chr11 36221642 36221937 -114561616 - AluSg SINE Alu -14 296 1 458 274 37 56 chr11 36222437 36222652 -114560901 - MIR SINE MIR 0 262 52 452 175 10 10 chr11 36222946 36223043 -114560510 + MSTB1 LTR MaLR 7 103 -329 2020 111 14 17 chr11 36223469 36223766 -114559787 + AluSq SINE Alu 1 296 -17 841 172 6 56 chr11 36223768 36223948 -114559605 + AluSg/x SINE Alu 135 305 -5 1794 114 54 14 chr11 36224390 36224670 -114558883 + AluSc SINE Alu 2 292 -17 553 290 84 35 chr11 36224679 36224965 -114558588 - MLT1I LTR MaLR -91 318 19 1584 73 23 0 chr11 36225900 36226120 -114557433 + L1PA7 LINE L1 5778 6002 -152 231 91 0 0 chr11 36226260 36226293 -114557260 + L1PA7 LINE L1 6097 6129 -25 2240 95 7 13 chr11 36226293 36226599 -114556954 - AluSq SINE Alu -9 304 1 234 170 0 21 chr11 36226600 36226647 -114556906 + MLT1I LTR MaLR 363 408 -1 21 57 0 0 chr11 36227091 36227126 -114556427 + AT_rich Low_complexity Low_complexity 1 35 0 1925 162 28 7 chr11 36227214 36227531 -114556022 + AluJb SINE Alu 1 312 0 317 207 0 0 chr11 36227730 36227788 -114555765 - MLT1H1 LTR MaLR -2 553 496 207 0 0 0 chr11 36227788 36227811 -114555742 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 257 136 0 23 chr11 36227811 36227855 -114555698 - Alu SINE Alu -19 283 241 207 0 0 0 chr11 36228977 36229000 -114554553 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 23 54 0 0 chr11 36229151 36229188 -114554365 + AT_rich Low_complexity Low_complexity 1 37 0 279 335 81 6 chr11 36229211 36229372 -114554181 + MIR SINE MIR 66 238 -24 2342 66 10 3 chr11 36229966 36230268 -114553285 + AluY SINE Alu 8 311 0 180 250 0 0 chr11 36230961 36231005 -114552548 - MIR SINE MIR 0 262 219 1828 160 7 3 chr11 36231017 36231310 -114552243 - AluJb SINE Alu 0 312 19 23353 50 11 11 chr11 36231442 36234693 -114548860 + L1P LINE L1 2131 5380 -766 879 237 290 5 chr11 36236469 36236910 -114546643 - L2 LINE L2 -4 3309 2748 260 270 0 16 chr11 36237090 36237153 -114546400 + MER5A DNA MER1_type 128 189 0 410 249 61 61 chr11 36237180 36237345 -114546208 + MER58B DNA MER1_type 177 341 0 1342 90 0 48 chr11 36237361 36237549 -114546004 + AluSq SINE Alu 1 179 -134 1172 73 90 0 chr11 36237608 36237785 -114545768 - Tigger3(Golem) DNA MER2_type -276 2753 2561 624 138 0 37 chr11 36237788 36237897 -114545656 + AluJb SINE Alu 1 105 -207 189 0 0 0 chr11 36238379 36238400 -114545153 + (CA)n Simple_repeat Simple_repeat 2 22 0 247 175 0 50 chr11 36239418 36239498 -114544055 - L1MA10 LINE L1 -3 6331 6256 1606 208 76 37 chr11 36239520 36240163 -114543390 - L1M4 LINE L1 -1197 4949 4282 331 239 61 35 chr11 36240192 36240389 -114543164 - Tigger4(Zombi) DNA MER2_type -1 2730 2529 1089 273 38 14 chr11 36240531 36240901 -114542652 + MLT1E2 LTR MaLR 247 625 -1 1866 137 3 20 chr11 36242385 36242677 -114540876 - AluSq SINE Alu -26 287 1 192 241 165 25 chr11 36242690 36242769 -114540784 - MIR3 SINE MIR -21 187 98 2325 93 0 3 chr11 36242803 36243094 -114540459 - AluSx SINE Alu -22 290 1 2268 99 0 13 chr11 36243928 36244231 -114539322 - AluSx SINE Alu -13 299 1 2106 126 8 14 chr11 36244380 36244737 -114538816 - L1MA8 LINE L1 0 6291 5937 339 285 84 107 chr11 36245126 36245424 -114538129 + L2 LINE L2 2682 2972 -342 212 152 43 0 chr11 36245730 36245776 -114537777 + (TATG)n Simple_repeat Simple_repeat 4 51 0 2274 86 0 0 chr11 36246404 36246696 -114536857 + AluYa5 SINE Alu 7 298 -13 295 267 139 20 chr11 36246720 36246821 -114536732 + MIR SINE MIR 143 255 -7 248 254 17 0 chr11 36247476 36247535 -114536018 - L2 LINE L2 0 3313 3254 520 233 7 55 chr11 36247737 36247883 -114535670 + L2 LINE L2 3134 3272 0 474 90 0 0 chr11 36247870 36247952 -114535601 + (TGGA)n Simple_repeat Simple_repeat 1 82 0 * 549 375 18 13 chr11 36248698 36248922 -114534631 + L3 LINE CR1 1220 1444 -133 592 269 127 5 chr11 36249051 36249248 -114534305 - MIR SINE MIR 0 262 42 1651 51 182 12 chr11 36249358 36249611 -114533942 + AluY SINE Alu 1 296 -15 914 136 45 0 chr11 36249612 36249766 -114533787 - LTR41 LTR ERVL -612 161 1 28 0 0 0 chr11 36249885 36249913 -114533640 + AT_rich Low_complexity Low_complexity 1 28 0 591 275 140 0 chr11 36250125 36250303 -114533250 + MIR SINE MIR 20 222 -40 353 289 104 7 chr11 36250834 36250969 -114532584 - MIR3 SINE MIR -11 197 50 2121 85 7 0 chr11 36251000 36251282 -114532271 + AluSg SINE Alu 1 284 -26 323 351 108 52 chr11 36251829 36252401 -114531152 - L3 LINE CR1 -727 850 247 6275 165 14 12 chr11 36252947 36254078 -114529475 + Tigger4(Zombi) DNA MER2_type 705 1837 -894 1611 191 0 92 chr11 36254704 36255129 -114528424 - MLT1B LTR MaLR -4 386 1 185 355 0 13 chr11 36255199 36255275 -114528278 - L3 LINE CR1 -7 1570 1496 815 169 59 131 chr11 36255634 36255870 -114527683 + MER20 DNA MER1_type 1 219 0 2260 100 0 0 chr11 36255902 36256202 -114527351 + AluSx SINE Alu 1 300 -12 2195 100 0 10 chr11 36256296 36256596 -114526957 + AluSx SINE Alu 6 302 -10 186 171 0 0 chr11 36256633 36256674 -114526879 + GA-rich Low_complexity Low_complexity 1 41 0 228 35 0 0 chr11 36256701 36256730 -114526823 + (GGAA)n Simple_repeat Simple_repeat 4 32 0 289 320 90 28 chr11 36257331 36257509 -114526044 + MER5A DNA MER1_type 1 189 0 387 257 50 29 chr11 36257894 36258034 -114525519 - MER5A DNA MER1_type -26 163 21 1825 127 48 0 chr11 36258088 36258380 -114525173 + AluSq SINE Alu 1 306 -7 2195 108 0 0 chr11 36258439 36258744 -114524809 + AluSq SINE Alu 1 305 -8 28 29 0 0 chr11 36259081 36259116 -114524437 + AT_rich Low_complexity Low_complexity 1 35 0 2841 163 28 26 chr11 36259214 36259692 -114523861 - L1MB7 LINE L1 -8 6176 5695 1941 111 180 45 chr11 36259692 36260027 -114523526 + MSTA LTR MaLR 1 394 -34 2091 99 3 14 chr11 36260027 36260321 -114523232 - AluSc SINE Alu -18 291 1 1941 111 180 45 chr11 36260321 36260362 -114523191 + MSTA LTR MaLR 394 428 0 2841 163 28 26 chr11 36260362 36260460 -114523093 - L1MB7 LINE L1 -489 5695 5599 2011 125 0 10 chr11 36260462 36260767 -114522786 - AluSg SINE Alu -8 302 1 2139 101 3 3 chr11 36260946 36261244 -114522309 + AluSp SINE Alu 1 298 -15 751 283 69 8 chr11 36261865 36262112 -114521441 - MIR SINE MIR 0 262 1 300 374 93 22 chr11 36262134 36262273 -114521280 + MIR SINE MIR 23 171 -91 786 138 17 0 chr11 36262432 36262548 -114521005 + FLAM_C SINE Alu 2 119 -24 32 35 0 18 chr11 36262548 36262582 -114520971 + AT_rich Low_complexity Low_complexity 1 35 -21 1909 147 0 0 chr11 36262582 36262868 -114520685 - AluSx SINE Alu -24 288 3 32 35 0 18 chr11 36262868 36262890 -114520663 + AT_rich Low_complexity Low_complexity 35 56 0 921 138 0 0 chr11 36263158 36263288 -114520265 + FLAM_C SINE Alu 1 130 -3 940 301 172 30 chr11 36263702 36263912 -114519641 + L2 LINE L2 1466 1645 -1669 1863 154 13 3 chr11 36263912 36264218 -114519335 + AluJb SINE Alu 3 311 -1 940 301 172 30 chr11 36264218 36264612 -114518941 + L2 LINE L2 1645 2156 -1158 1053 133 17 33 chr11 36264612 36264793 -114518760 - AluSx SINE Alu -1 311 134 600 109 0 40 chr11 36264793 36264894 -114518659 - L1PA8 LINE L1 0 6172 6076 2689 65 6 0 chr11 36264895 36265231 -114518322 - L1PA8 LINE L1 -30 6142 5805 973 94 0 0 chr11 36265248 36265375 -114518178 - AluSx SINE Alu -179 134 8 1676 309 77 40 chr11 36265378 36266321 -114517232 + L2 LINE L2 2154 3219 -94 1856 125 10 20 chr11 36266664 36266802 -114516751 + AluSx SINE Alu 1 139 -173 2198 96 0 0 chr11 36266802 36267095 -114516458 + AluY SINE Alu 1 293 -18 1856 125 10 20 chr11 36267095 36267259 -114516294 + AluSx SINE Alu 139 300 -12 1260 141 4 18 chr11 36267344 36267571 -114515982 - AluJo SINE Alu -1 311 88 560 271 144 18 chr11 36267817 36268046 -114515507 - MIR SINE MIR 0 262 5 1907 134 0 3 chr11 36268249 36268555 -114514998 - AluSx SINE Alu 0 305 1 904 130 0 0 chr11 36268576 36268714 -114514839 - FRAM SINE Alu -8 168 31 2219 107 0 0 chr11 36268857 36269155 -114514398 - AluSg SINE Alu -12 298 1 931 114 0 15 chr11 36269508 36269640 -114513913 + FLAM_C SINE Alu 1 130 -3 737 178 82 14 chr11 36270035 36270181 -114513372 - FAM SINE Alu -18 167 12 1883 148 0 0 chr11 36270382 36270679 -114512874 - AluJb SINE Alu -15 297 1 236 283 141 0 chr11 36270714 36270806 -114512747 + MIR SINE MIR 156 260 -2 374 295 38 19 chr11 36271440 36271545 -114512008 + MIR SINE MIR 50 156 -106 880 98 8 15 chr11 36271567 36271699 -114511854 + AluSq/x SINE Alu 1 131 -182 774 206 77 0 chr11 36272094 36272249 -114511304 - FAM SINE Alu -18 167 1 223 84 42 28 chr11 36272267 36272338 -114511215 + (TTA)n Simple_repeat Simple_repeat 1 72 0 37 69 0 0 chr11 36272355 36272427 -114511126 + AT_rich Low_complexity Low_complexity 1 72 0 240 35 0 0 chr11 36272611 36272640 -114510913 + (CCCCCT)n Simple_repeat Simple_repeat 2 30 0 9993 45 1 77 chr11 36272640 36274078 -114509475 + SVA Other Other 57 1386 0 2001 143 0 0 chr11 36274426 36274733 -114508820 + AluSx SINE Alu 1 307 -5 1556 145 0 93 chr11 36275428 36275760 -114507793 - AluJb SINE Alu -11 301 1 417 219 84 17 chr11 36275760 36275871 -114507682 - MIR SINE MIR -52 210 89 1746 149 68 54 chr11 36276086 36276456 -114507097 - THE1C LTR MaLR 0 375 1 239 150 0 0 chr11 36276673 36276713 -114506840 + MER45 DNA AcHobo 1 40 -1541 417 267 48 0 chr11 36276716 36276821 -114506732 - MER5A DNA MER1_type -71 118 9 7207 128 128 104 chr11 36276973 36278631 -114504922 + pTR5 LTR ERV1 741 2438 0 348 196 167 20 chr11 36278640 36278742 -114504811 + MIR SINE MIR 96 212 -50 1865 138 27 7 chr11 36278947 36279245 -114504308 - AluSx SINE Alu -8 304 1 2101 161 5 72 chr11 36279326 36279489 -114504064 - MLT1B LTR MaLR -3 387 215 1394 211 35 54 chr11 36279489 36279824 -114503729 - MLT1A1 LTR MaLR -2 363 34 1713 166 0 3 chr11 36279824 36280138 -114503415 + AluJo SINE Alu 1 312 0 1394 211 35 54 chr11 36280138 36280172 -114503381 - MLT1A1 LTR MaLR -331 34 1 2101 161 5 72 chr11 36280172 36280236 -114503317 - MLT1B LTR MaLR -175 215 148 1962 126 33 0 chr11 36280236 36280538 -114503015 - AluSx SINE Alu 0 312 1 2101 161 5 72 chr11 36280538 36280724 -114502829 - MLT1B LTR MaLR -242 148 1 2582 23 7 3 chr11 36280811 36281120 -114502433 - AluY SINE Alu -1 310 1 425 296 53 0 chr11 36281234 36281366 -114502187 + MIR SINE MIR 65 203 -59 1766 162 0 3 chr11 36281432 36281729 -114501824 - AluJb SINE Alu -16 296 1 1937 121 50 0 chr11 36281752 36282049 -114501504 - AluSx SINE Alu 0 312 1 971 129 18 47 chr11 36282081 36282251 -114501302 + LTR47A LTR ERVL 1 165 -287 1131 132 30 0 chr11 36282471 36282668 -114500885 - L1MA4A LINE L1 -1 6302 6100 1676 141 72 34 chr11 36282673 36282853 -114500700 + LTR47A LTR ERVL 151 348 -104 2231 107 0 0 chr11 36282853 36283162 -114500391 - AluSx SINE Alu -3 309 1 1676 141 72 34 chr11 36283162 36283272 -114500281 + LTR47A LTR ERVL 348 452 0 182 358 0 0 chr11 36284608 36284675 -114498878 + L2 LINE L2 2992 3058 -214 201 254 0 90 chr11 36284800 36284867 -114498686 + L2 LINE L2 3189 3249 -23 2091 105 0 7 chr11 36285194 36285509 -114498044 + AluSx SINE Alu 1 313 0 556 260 73 29 chr11 36285740 36285944 -114497609 + MIR SINE MIR 18 230 -32 2233 92 3 0 chr11 36285983 36286289 -114497264 - AluSx SINE Alu -5 307 1 568 239 107 49 chr11 36287113 36287244 -114496309 + L1M4 LINE L1 2846 2968 -3178 1851 112 48 0 chr11 36287244 36287546 -114496007 - AluSc SINE Alu 0 315 1 568 239 107 49 chr11 36287546 36287844 -114495709 + L1M4 LINE L1 2968 3301 -2845 2151 125 0 0 chr11 36287845 36288156 -114495397 + AluSx SINE Alu 1 311 -1 452 147 27 0 chr11 36288172 36288247 -114495306 + AluSx SINE Alu 7 83 -230 1476 111 0 5 chr11 36288285 36288518 -114495035 + AluSx SINE Alu 75 306 0 375 318 64 23 chr11 36288671 36288844 -114494709 + MIR SINE MIR 15 194 -68 1781 144 33 13 chr11 36288893 36289199 -114494354 + AluSx SINE Alu 1 312 0 703 180 0 8 chr11 36289204 36289332 -114494221 + FLAM_A SINE Alu 1 127 -6 451 140 184 19 chr11 36289799 36289913 -114493640 + L1MB5 LINE L1 6044 6183 0 1867 120 87 39 chr11 36290084 36290442 -114493111 + THE1C LTR MaLR 1 375 0 1226 166 0 35 chr11 36290767 36290996 -114492557 + AluJb SINE Alu 85 305 -7 830 153 0 0 chr11 36291012 36291130 -114492423 + FLAM_C SINE Alu 7 124 -19 861 288 24 4 chr11 36291313 36291563 -114491990 - MIR SINE MIR -6 256 2 494 196 10 0 chr11 36291603 36291700 -114491853 - MLT1K LTR MaLR -162 426 329 504 274 193 46 chr11 36291812 36292243 -114491310 + MLT1H1 LTR MaLR 32 525 -30 245 369 121 19 chr11 36292444 36292601 -114490952 + MIR SINE MIR 20 192 -70 2125 126 0 0 chr11 36293104 36293414 -114490139 - AluSx SINE Alu -2 310 1 725 241 122 30 chr11 36293666 36293903 -114489650 + MIR SINE MIR 2 260 -2 2218 97 0 7 chr11 36294548 36294856 -114488697 - AluSg SINE Alu -4 306 1 1942 132 7 0 chr11 36294856 36295145 -114488408 - AluSx SINE Alu -21 291 1 488 281 9 0 chr11 36295415 36295529 -114488024 + MIR3 SINE MIR 82 196 -12 2234 101 0 3 chr11 36295536 36295842 -114487711 + AluSx SINE Alu 1 305 -7 1544 108 31 0 chr11 36295932 36296155 -114487398 + MER30 DNA MER1_type 1 230 0 2021 129 7 0 chr11 36296299 36296602 -114486951 + AluSg SINE Alu 1 305 -5 357 340 12 92 chr11 36297022 36297137 -114486416 - L2 LINE L2 -155 3117 2994 2341 77 0 0 chr11 36297137 36297434 -114486119 - AluSp SINE Alu -15 298 2 357 340 12 92 chr11 36297434 36297656 -114485897 - L2 LINE L2 -278 2994 2807 609 188 56 129 chr11 36297824 36297862 -114485691 - L1M2 LINE L1 -577 5607 5568 2136 120 7 10 chr11 36297862 36298170 -114485383 - AluSg SINE Alu -3 307 1 609 188 56 129 chr11 36298170 36298285 -114485268 - L1M2 LINE L1 -616 5568 5446 201 57 0 29 chr11 36298285 36298320 -114485233 + (TTTG)n Simple_repeat Simple_repeat 1 48 0 2120 114 0 0 chr11 36298320 36298601 -114484952 - AluSx SINE Alu -1 315 1 609 188 56 129 chr11 36298601 36298682 -114484871 - L1M2 LINE L1 -736 5448 5419 2332 214 61 80 chr11 36299179 36299234 -114484319 + L1ME3A LINE L1 5435 5490 -680 1874 157 0 0 chr11 36299234 36299514 -114484039 + AluJb SINE Alu 1 280 -32 200 83 0 28 chr11 36299517 36299553 -114484000 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 2332 214 61 80 chr11 36299553 36299635 -114483918 + L1ME3A LINE L1 5492 5574 -596 2093 119 7 3 chr11 36299635 36299930 -114483623 + AluSx SINE Alu 1 296 -16 2332 214 61 80 chr11 36299930 36300410 -114483143 + L1ME3A LINE L1 5574 6062 -108 1600 142 0 122 chr11 36300410 36300587 -114482966 - AluJb SINE Alu 0 302 105 195 42 0 0 chr11 36300587 36300611 -114482942 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 2244 84 14 3 chr11 36300612 36300897 -114482656 - AluSq SINE Alu -25 288 1 1600 142 0 122 chr11 36300897 36301061 -114482492 - AluJb SINE Alu -196 106 1 2332 214 61 80 chr11 36301061 36301179 -114482374 + L1ME3A LINE L1 6062 6162 -8 2417 81 0 3 chr11 36301337 36301635 -114481918 - AluSp SINE Alu -15 298 2 2264 111 7 0 chr11 36302075 36302381 -114481172 - AluY SINE Alu -3 308 1 925 262 197 29 chr11 36302917 36303302 -114480251 + MLT1G LTR MaLR 141 590 0 1336 189 42 39 chr11 36303440 36303746 -114479807 + AluJo SINE Alu 1 307 -5 2030 150 7 0 chr11 36304011 36304305 -114479248 + AluSx SINE Alu 3 298 -14 2191 103 0 27 chr11 36304306 36304607 -114478946 + AluSg SINE Alu 2 294 -16 216 0 0 0 chr11 36304945 36304969 -114478584 + (TA)n Simple_repeat Simple_repeat 2 25 0 1211 288 114 40 chr11 36305352 36305709 -114477844 - L2 LINE L2 -595 2719 2390 1985 114 0 17 chr11 36305709 36306045 -114477508 - AluSq SINE Alu 0 331 1 1211 288 114 40 chr11 36306045 36306421 -114477132 - L2 LINE L2 -924 2390 1930 374 286 104 11 chr11 36306727 36306909 -114476644 - L2 LINE L2 -1395 1919 1721 343 215 51 13 chr11 36307197 36307276 -114476277 - MER5A DNA MER1_type -100 89 8 2214 117 3 0 chr11 36307316 36307616 -114475937 + AluSx SINE Alu 1 301 -11 448 297 33 6 chr11 36307623 36307805 -114475748 + L2 LINE L2 2571 2757 -557 657 175 8 50 chr11 36307835 36307929 -114475624 - MLT2B1 LTR ERVL -202 313 217 2028 116 3 14 chr11 36307929 36308223 -114475330 + AluSp SINE Alu 1 291 -22 402 21 0 0 chr11 36308223 36308270 -114475283 + (GA)n Simple_repeat Simple_repeat 2 48 0 657 175 8 50 chr11 36308270 36308294 -114475259 - MLT2B1 LTR ERVL -296 219 199 843 147 0 31 chr11 36308299 36308428 -114475125 - FLAM_C SINE Alu -17 126 2 1553 95 5 5 chr11 36308429 36308639 -114474914 - MLT2B1 LTR ERVL -309 211 2 337 307 51 89 chr11 36308641 36308810 -114474743 - L2 LINE L2 -2769 545 371 1745 174 0 11 chr11 36308810 36309092 -114474461 + AluJo SINE Alu 3 281 -31 337 307 51 89 chr11 36309092 36309293 -114474260 - L2 LINE L2 -2943 371 189 942 202 33 0 chr11 36309306 36309489 -114474064 - MER5A DNA MER1_type 0 189 1 800 169 0 0 chr11 36310711 36310829 -114472724 - FLAM_C SINE Alu -25 118 1 1812 160 13 20 chr11 36311728 36312034 -114471519 + AluJo SINE Alu 1 304 -8 1813 136 0 0 chr11 36312785 36313043 -114470510 - AluSg SINE Alu -15 295 38 180 0 0 0 chr11 36313394 36313414 -114470139 + (T)n Simple_repeat Simple_repeat 1 20 0 2233 118 3 3 chr11 36313427 36313732 -114469821 + AluSx SINE Alu 1 305 -7 766 225 13 0 chr11 36313866 36314017 -114469536 - FRAM SINE Alu -23 153 1 2317 114 0 3 chr11 36314714 36315021 -114468532 - AluSq SINE Alu -7 306 1 285 257 124 62 chr11 36315061 36315201 -114468352 - L3 LINE CR1 -84 1493 1330 2215 110 3 3 chr11 36315201 36315501 -114468052 + AluSx SINE Alu 1 300 -12 285 257 124 62 chr11 36315501 36315601 -114467952 - L3 LINE CR1 -247 1330 1238 2680 49 0 0 chr11 36315857 36316162 -114467391 + AluY SINE Alu 1 305 -6 22 80 0 0 chr11 36316487 36316537 -114467016 + AT_rich Low_complexity Low_complexity 1 50 0 1629 108 124 12 chr11 36317322 36317581 -114465972 - AluSg1 SINE Alu -21 288 1 2496 62 0 10 chr11 36318468 36318775 -114464778 - AluY SINE Alu -7 304 1 1041 162 0 46 chr11 36318888 36319085 -114464468 - MER5A DNA MER1_type -1 188 1 1242 155 61 84 chr11 36319506 36319803 -114463750 - AluJb SINE Alu -22 290 1 2154 104 0 7 chr11 36319824 36320145 -114463408 - AluSg SINE Alu 0 310 1 1850 108 64 47 chr11 36320148 36320444 -114463109 - AluSg SINE Alu -8 302 2 2046 149 7 0 chr11 36320445 36320741 -114462812 - AluSx SINE Alu -12 300 3 1371 183 42 39 chr11 36321006 36321312 -114462241 - AluJo SINE Alu -5 307 1 1137 256 158 75 chr11 36321450 36321996 -114461557 - MLT1G LTR MaLR 0 590 5 2238 105 7 0 chr11 36322665 36322961 -114460592 - AluSg SINE Alu -12 298 1 24 0 0 0 chr11 36323005 36323029 -114460524 + AT_rich Low_complexity Low_complexity 1 24 0 216 67 0 0 chr11 36323421 36323451 -114460102 + (A)n Simple_repeat Simple_repeat 1 30 0 1665 176 7 4 chr11 36323937 36324209 -114459344 - AluSx SINE Alu -39 273 1 2294 102 3 0 chr11 36324222 36324515 -114459038 - AluSp SINE Alu -19 294 1 2083 128 7 0 chr11 36324515 36324804 -114458749 - AluSx SINE Alu -21 291 1 443 281 9 0 chr11 36325074 36325188 -114458365 + MIR3 SINE MIR 82 196 -12 2361 101 0 3 chr11 36325195 36325501 -114458052 + AluSx SINE Alu 1 305 -7 1555 104 36 0 chr11 36325591 36325813 -114457740 + MER30 DNA MER1_type 1 230 0 2370 92 7 0 chr11 36325957 36326263 -114457290 + AluSg SINE Alu 1 308 -2 756 145 140 55 chr11 36326332 36326532 -114457021 + L1ME1 LINE L1 5800 6016 -150 637 235 7 7 chr11 36326532 36326685 -114456868 + L1MA10 LINE L1 6175 6327 -7 2086 140 6 16 chr11 36326760 36327075 -114456478 + AluJo SINE Alu 1 312 0 187 203 31 0 chr11 36327137 36327201 -114456352 + (TATATG)n Simple_repeat Simple_repeat 3 68 0 2428 94 19 0 chr11 36327582 36327889 -114455664 - AluSq SINE Alu 0 313 1 2262 78 0 39 chr11 36327902 36328208 -114455345 - AluY SINE Alu -17 294 1 2022 151 20 0 chr11 36328694 36328999 -114454554 - AluSx SINE Alu -1 311 1 628 300 99 73 chr11 36329331 36329868 -114453685 + MLT1K LTR MaLR 35 585 -3 445 321 47 31 chr11 36330209 36330271 -114453282 - MIR SINE MIR -17 245 185 351 0 0 0 chr11 36330271 36330310 -114453243 + (TTTA)n Simple_repeat Simple_repeat 1 39 0 2223 92 3 7 chr11 36330312 36330595 -114452958 - AluSp SINE Alu -31 282 1 445 321 47 31 chr11 36330595 36330722 -114452831 - MIR SINE MIR -77 185 50 195 266 127 0 chr11 36331369 36331448 -114452105 - MIR SINE MIR -18 244 156 1984 149 0 0 chr11 36331486 36331781 -114451772 + AluJb SINE Alu 2 296 -16 2446 100 0 0 chr11 36332028 36332338 -114451215 - AluSg SINE Alu 0 310 1 481 276 39 0 chr11 36332456 36332583 -114450970 - L2 LINE L2 -3 3310 3179 2339 88 7 3 chr11 36332704 36333009 -114450544 + AluSp SINE Alu 1 306 -7 1383 236 183 60 chr11 36333283 36333356 -114450197 - LTR41 LTR ERVL -1 772 709 2103 110 7 35 chr11 36333356 36333666 -114449887 + AluSx SINE Alu 1 301 -11 1508 105 5 0 chr11 36333666 36333856 -114449697 + AluSx SINE Alu 1 192 -120 1383 236 183 60 chr11 36333856 36334312 -114449241 - LTR41 LTR ERVL -64 709 135 1833 47 177 12 chr11 36334312 36334566 -114448987 + AluY SINE Alu 1 296 -15 1383 236 183 60 chr11 36334566 36334721 -114448832 - LTR41 LTR ERVL -638 135 1 28 0 0 0 chr11 36334840 36334868 -114448685 + AT_rich Low_complexity Low_complexity 1 28 0 517 275 140 0 chr11 36335080 36335258 -114448295 + MIR SINE MIR 20 222 -40 308 272 112 8 chr11 36335799 36335924 -114447629 - MIR3 SINE MIR -21 187 50 2265 82 7 0 chr11 36335955 36336237 -114447316 + AluSg SINE Alu 1 284 -26 394 128 17 211 chr11 36336792 36336946 -114446607 + L1MD1 LINE L1 6117 6226 -16 2365 96 0 13 chr11 36337068 36337381 -114446172 + AluSq SINE Alu 1 309 -4 2356 105 0 3 chr11 36338175 36338480 -114445073 - AluSq SINE Alu -9 304 1 23 33 0 0 chr11 36338576 36338606 -114444947 + AT_rich Low_complexity Low_complexity 1 30 0 762 213 118 147 chr11 36338798 36339279 -114444274 + MLT1H1 LTR MaLR 3 480 -75 1395 94 0 0 chr11 36339279 36339449 -114444104 - AluSg/x SINE Alu -16 296 127 537 113 12 12 chr11 36339480 36339560 -114443993 + AluSg1 SINE Alu 4 83 -226 2630 130 22 49 chr11 36339734 36339767 -114443786 + L1MA2 LINE L1 5773 5805 -499 2187 102 10 3 chr11 36339767 36340060 -114443493 + AluSx SINE Alu 1 295 -17 2630 130 22 49 chr11 36340060 36340416 -114443137 + L1MA2 LINE L1 5805 6146 -158 2077 107 7 7 chr11 36340416 36340719 -114442834 + AluSx SINE Alu 1 303 0 2630 130 22 49 chr11 36340719 36340874 -114442679 + L1MA2 LINE L1 6146 6304 0 1698 131 113 7 chr11 36341264 36341546 -114442007 - AluJb SINE Alu 0 312 1 374 269 41 28 chr11 36341579 36341724 -114441829 - MIR SINE MIR -12 250 104 2132 138 3 0 chr11 36341920 36342217 -114441336 + AluSx SINE Alu 1 298 -14 626 255 28 75 chr11 36343019 36343301 -114440252 - MER102b DNA MER1_type 0 341 73 2013 160 0 0 chr11 36343952 36344252 -114439301 + AluJb SINE Alu 3 302 -10 322 273 0 0 chr11 36344713 36344790 -114438763 - L2 LINE L2 -6 3307 3231 499 244 134 0 chr11 36345500 36345627 -114437926 + MIR SINE MIR 47 190 -72 1990 133 0 0 chr11 36345748 36346034 -114437519 - Tigger3(Golem) DNA MER2_type 0 3029 2744 306 170 0 0 chr11 36346040 36346093 -114437460 - AluSp/q SINE Alu -62 241 189 238 96 0 40 chr11 36346093 36346344 -114437209 + AluSq SINE Alu 1 303 0 * 2301 90 76 69 chr11 36346340 36346520 -114437033 - Tigger3(Golem) DNA MER2_type -275 2753 2576 854 173 0 0 chr11 36346520 36346653 -114436900 + FLAM_C SINE Alu 1 133 0 2301 90 76 69 chr11 36346653 36346895 -114436658 - Tigger3(Golem) DNA MER2_type -452 2576 2328 2008 145 7 3 chr11 36346896 36347206 -114436347 + AluSx SINE Alu 1 311 -1 330 280 80 27 chr11 36347897 36347953 -114435600 - MIR SINE MIR 0 262 210 1953 147 13 13 chr11 36347953 36348265 -114435288 - AluJb SINE Alu 0 312 1 330 280 80 27 chr11 36348265 36348358 -114435195 - MIR SINE MIR -52 210 105 2488 87 0 0 chr11 36348691 36349001 -114434552 - AluSg SINE Alu 0 310 1 203 237 0 0 chr11 36349035 36349073 -114434480 + polypyrimidine Low_complexity Low_complexity 3 40 0 234 62 0 0 chr11 36349570 36349602 -114433951 + (T)n Simple_repeat Simple_repeat 1 32 0 314 108 5 0 chr11 36349757 36349810 -114433743 + MER63 DNA MER1_type 8 43 -167 457 210 40 10 chr11 36349810 36349910 -114433643 + MER21B LTR ERV1 1 103 -760 3628 210 31 37 chr11 36349912 36350750 -114432803 + MER21B LTR ERV1 20 852 -11 183 162 0 0 chr11 36350751 36350788 -114432765 + (TA)n Simple_repeat Simple_repeat 1 37 0 337 300 0 0 chr11 36350788 36350878 -114432675 - L1MC4 LINE L1 -1338 6704 6615 513 169 66 25 chr11 36351092 36351246 -114432307 - Tigger3(Golem) DNA MER2_type -686 2343 1 2149 135 0 0 chr11 36351304 36351607 -114431946 - AluSx SINE Alu -9 303 1 1957 111 35 3 chr11 36352304 36352592 -114430961 - AluSq SINE Alu -16 297 1 180 182 0 0 chr11 36353095 36353139 -114430414 + (CACCAT)n Simple_repeat Simple_repeat 5 48 0 2080 96 0 21 chr11 36353836 36354118 -114429435 - AluSx SINE Alu -23 289 14 1833 177 0 10 chr11 36354498 36354803 -114428750 + AluJb SINE Alu 1 302 -10 262 261 42 21 chr11 36354819 36354961 -114428592 - L1ME4a LINE L1 -16 6105 5961 414 58 0 0 chr11 36355894 36355946 -114427607 - MADE1 DNA Mariner 0 80 29 489 262 35 0 chr11 36356567 36356712 -114426841 - L2 LINE L2 -6 3307 3158 4542 146 71 33 chr11 36356716 36357829 -114425724 + L1MB7 LINE L1 5021 6175 -9 2013 143 13 3 chr11 36357846 36358154 -114425399 + AluSx SINE Alu 1 311 -1 34 42 0 0 chr11 36358291 36358339 -114425214 + AT_rich Low_complexity Low_complexity 1 48 0 1809 127 21 28 chr11 36358584 36358867 -114424686 + AluSq SINE Alu 1 281 -32 261 0 0 0 chr11 36358867 36358896 -114424657 + (CAAT)n Simple_repeat Simple_repeat 4 32 0 358 131 16 0 chr11 36358897 36358958 -114424595 - L1MA10 LINE L1 -7 6327 6266 1031 192 0 11 chr11 36358992 36359169 -114424384 - FAM SINE Alu 0 175 1 207 261 0 0 chr11 36359568 36359637 -114423916 + L2 LINE L2 2593 2661 -653 228 163 0 0 chr11 36359675 36359718 -114423835 + (CA)n Simple_repeat Simple_repeat 1 43 0 335 279 82 55 chr11 36359740 36360146 -114423407 + L2 LINE L2 2683 3091 -181 2000 159 0 0 chr11 36360643 36360932 -114422621 + AluJo SINE Alu 1 289 -23 477 257 181 12 chr11 36361119 36361290 -114422263 - MIR SINE MIR -60 202 3 206 271 57 41 chr11 36361290 36361391 -114422162 + L2 LINE L2 3207 3309 -4 351 238 24 0 chr11 36361414 36361498 -114422055 - L2 LINE L2 0 3272 3187 193 326 12 0 chr11 36361507 36361593 -114421960 - L3 LINE CR1 -33 1544 1458 250 257 29 48 chr11 36361690 36361795 -114421758 - L3 LINE CR1 -293 1284 1182 1953 146 3 0 chr11 36361865 36362152 -114421401 + AluJb SINE Alu 2 289 -23 317 296 68 0 chr11 36362176 36362264 -114421289 - L2 LINE L2 -36 3236 3143 371 83 17 0 chr11 36362602 36362662 -114420891 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 267 307 10 0 chr11 36362786 36362887 -114420666 + MIR SINE MIR 157 258 -4 257 303 40 10 chr11 36362911 36363010 -114420543 - L3 LINE CR1 -811 766 665 458 275 13 13 chr11 36363515 36363664 -114419889 + MER103 DNA DNA 2 150 -16 204 171 0 0 chr11 36363690 36363704 -114419849 + A-rich Low_complexity Low_complexity 1 14 -27 2645 48 0 10 chr11 36363704 36364018 -114419535 + AluY SINE Alu 1 311 0 204 171 0 0 chr11 36364018 36364044 -114419509 + A-rich Low_complexity Low_complexity 13 41 0 2479 83 0 6 chr11 36364370 36364684 -114418869 + AluSx SINE Alu 1 312 0 2373 88 0 25 chr11 36365030 36365349 -114418204 + AluSx SINE Alu 1 311 -1 2039 126 37 62 chr11 36365408 36365487 -114418066 - MER47A DNA MER2_type -1957 366 287 2026 82 44 7 chr11 36365487 36365784 -114417769 + AluY SINE Alu 3 309 0 2039 126 37 62 chr11 36365784 36366077 -114417476 - MER47A DNA MER2_type -2036 287 2 1916 139 29 0 chr11 36366212 36366492 -114417061 + AluSx SINE Alu 1 288 -24 225 0 0 0 chr11 36366586 36366611 -114416942 + (CA)n Simple_repeat Simple_repeat 2 26 0 208 218 18 18 chr11 36366689 36366744 -114416809 - MIR SINE MIR -12 250 196 225 132 0 0 chr11 36367025 36367063 -114416490 + (TC)n Simple_repeat Simple_repeat 2 39 0 278 298 91 8 chr11 36367233 36367354 -114416199 - MIR SINE MIR -98 164 34 192 40 0 0 chr11 36367719 36367744 -114415809 + (CAAAAA)n Simple_repeat Simple_repeat 4 28 0 890 168 0 0 chr11 36367761 36367892 -114415661 - AluSq/x SINE Alu -180 133 3 807 285 17 7 chr11 36368861 36369159 -114414394 + AluSq SINE Alu 3 303 -10 1254 278 14 33 chr11 36369168 36369535 -114414018 - MLT1I LTR MaLR -49 360 1 3668 194 42 35 chr11 36369620 36370400 -114413153 - MER63C DNA MER1_type -130 930 142 2228 120 0 3 chr11 36370400 36370709 -114412844 + AluSx SINE Alu 5 312 0 3668 194 42 35 chr11 36370709 36370804 -114412749 - MER63C DNA MER1_type -918 142 49 324 200 0 0 chr11 36370806 36370881 -114412672 + (TA)n Simple_repeat Simple_repeat 1 75 0 255 284 23 0 chr11 36370882 36370970 -114412583 - L1MC4 LINE L1 -1339 6703 6614 242 292 0 0 chr11 36370976 36371065 -114412488 - L1MC4 LINE L1 -1339 6703 6615 315 177 0 0 chr11 36371066 36371128 -114412425 + (TA)n Simple_repeat Simple_repeat 2 63 0 233 289 22 0 chr11 36371129 36371219 -114412334 + L1MC4 LINE L1 6615 6706 -1336 189 262 0 0 chr11 36371219 36371280 -114412273 + (TA)n Simple_repeat Simple_repeat 1 61 0 2217 110 7 3 chr11 36371618 36371917 -114411636 - AluSx SINE Alu -12 300 1 189 0 0 0 chr11 36371930 36371951 -114411602 + (A)n Simple_repeat Simple_repeat 1 21 0 1989 100 0 4 chr11 36372300 36372560 -114410993 + AluSg SINE Alu 38 296 -14 2390 86 0 3 chr11 36373394 36373685 -114409868 + AluSx SINE Alu 1 290 -22 2111 116 10 13 chr11 36373811 36374122 -114409431 + AluSq SINE Alu 1 310 -3 2047 111 14 17 chr11 36376204 36376501 -114407052 + AluSq SINE Alu 1 296 -17 858 167 6 56 chr11 36376503 36376683 -114406870 + AluSg/x SINE Alu 135 305 -5 2242 98 3 0 chr11 36377107 36377402 -114406151 + AluSp SINE Alu 1 296 -17 26 30 0 0 chr11 36379300 36379333 -114404220 + GC_rich Low_complexity Low_complexity 1 33 0 33 90 0 0 chr11 36379573 36379662 -114403891 + GC_rich Low_complexity Low_complexity 1 89 0 754 235 290 5 chr11 36381186 36381627 -114401926 - L2 LINE L2 -4 3309 2748 235 270 0 16 chr11 36381807 36381870 -114401683 + MER5A DNA MER1_type 128 189 0 526 208 54 71 chr11 36381897 36382065 -114401488 + MER58B DNA MER1_type 177 341 0 1862 137 42 7 chr11 36382082 36382367 -114401186 + AluSx SINE Alu 1 295 -17 625 287 84 35 chr11 36382376 36382662 -114400891 - MLT1I LTR MaLR -91 318 19 1102 136 0 0 chr11 36383906 36384060 -114399493 + AluSg/x SINE Alu 147 300 -12 2267 97 0 10 chr11 36384150 36384439 -114399114 + AluSx SINE Alu 11 296 -16 450 0 0 0 chr11 36384777 36384827 -114398726 + (TA)n Simple_repeat Simple_repeat 2 51 0 1200 290 114 40 chr11 36385208 36385565 -114397988 - L2 LINE L2 -595 2719 2390 2044 108 0 14 chr11 36385565 36385884 -114397669 - AluSq SINE Alu 0 315 1 1200 290 114 40 chr11 36385884 36386260 -114397293 - L2 LINE L2 -924 2390 1930 374 286 104 11 chr11 36386566 36386748 -114396805 - L2 LINE L2 -1395 1919 1721 352 215 51 13 chr11 36387036 36387115 -114396438 - MER5A DNA MER1_type -100 89 8 2196 120 3 0 chr11 36387155 36387456 -114396097 + AluSx SINE Alu 1 302 -10 448 297 33 6 chr11 36387463 36387645 -114395908 + L2 LINE L2 2571 2757 -557 639 171 8 73 chr11 36387675 36387769 -114395784 - MLT2B1 LTR ERVL -202 313 214 2229 107 3 0 chr11 36387769 36388059 -114395494 + AluSp SINE Alu 1 291 -22 249 33 0 0 chr11 36388059 36388089 -114395464 + (GA)n Simple_repeat Simple_repeat 2 31 0 639 171 8 73 chr11 36388089 36388116 -114395437 - MLT2B1 LTR ERVL -299 216 199 843 147 0 31 chr11 36388121 36388250 -114395303 - FLAM_C SINE Alu -17 126 2 1553 95 5 5 chr11 36388251 36388461 -114395092 - MLT2B1 LTR ERVL -309 211 2 337 307 51 89 chr11 36388463 36388632 -114394921 - L2 LINE L2 -2769 545 371 1729 177 0 11 chr11 36388632 36388914 -114394639 + AluJo SINE Alu 3 281 -31 337 307 51 89 chr11 36388914 36389115 -114394438 - L2 LINE L2 -2943 371 189 942 202 33 0 chr11 36389128 36389311 -114394242 - MER5A DNA MER1_type 0 189 1 835 144 0 0 chr11 36390533 36390651 -114392902 - FLAM_C SINE Alu -25 118 1 245 286 60 24 chr11 36390660 36390744 -114392809 - MIR SINE MIR -71 191 105 299 218 154 13 chr11 36391086 36391164 -114392389 - Tigger3(Golem) DNA MER2_type -2940 89 1 2170 133 0 0 chr11 36391222 36391524 -114392029 - AluSx SINE Alu -10 302 1 2343 72 27 0 chr11 36392221 36392513 -114391040 - AluSq SINE Alu -13 300 1 257 106 43 64 chr11 36392514 36392561 -114390992 + MLT1I LTR MaLR 363 408 -1 21 57 0 0 chr11 36393005 36393040 -114390513 + AT_rich Low_complexity Low_complexity 1 35 0 1880 168 28 3 chr11 36393128 36393446 -114390107 + AluJb SINE Alu 1 312 0 338 207 0 0 chr11 36393645 36393703 -114389850 - MLT1H1 LTR MaLR -2 553 496 330 270 0 0 chr11 36393705 36393800 -114389753 - AluSg/x SINE Alu 0 302 208 548 273 252 11 chr11 36496506 36496792 -114286761 + L2 LINE L2 1997 2351 -963 953 216 4 17 chr11 36497350 36497582 -114285971 + L1MCc LINE L1 17 245 -6178 5174 256 111 29 chr11 36497583 36498222 -114285331 + L1MCc LINE L1 1642 2227 -4714 3529 163 44 30 chr11 36498222 36498309 -114285244 + L1MB3 LINE L1 5452 5536 -647 1448 178 73 4 chr11 36498309 36498584 -114284969 - AluJo SINE Alu -18 294 1 3529 163 44 30 chr11 36498584 36499218 -114284335 + L1MB3 LINE L1 5536 6183 0 5174 256 111 29 chr11 36499218 36500532 -114283021 + L1MCc LINE L1 2227 3431 -3510 2033 142 0 3 chr11 36500532 36500834 -114282719 + AluSx SINE Alu 2 302 -10 5174 256 111 29 chr11 36500834 36501973 -114281580 + L1MCc LINE L1 3431 4997 -1944 1126 177 59 5 chr11 36502357 36502577 -114280976 - MER46A DNA MER2_type -4 232 1 23 0 0 0 chr11 36502860 36502883 -114280670 + AT_rich Low_complexity Low_complexity 1 23 0 222 300 14 0 chr11 36503427 36503497 -114280056 + (CATA)n Simple_repeat Simple_repeat 2 72 0 2271 108 7 10 chr11 36503585 36503892 -114279661 + AluSg SINE Alu 1 306 -4 1788 169 135 17 chr11 36503942 36504298 -114279255 - MER47B DNA MER2_type -1 417 20 796 200 42 50 chr11 36504298 36504538 -114279015 + L1MCc LINE L1 3484 3721 -3220 1665 182 38 7 chr11 36504952 36505243 -114278310 - AluJo SINE Alu -12 300 1 2404 115 0 0 chr11 36506079 36506391 -114277162 + AluSx SINE Alu 1 312 0 2185 212 43 69 chr11 36507550 36508219 -114275334 + MLT1E1 LTR MaLR 3 654 0 2186 130 10 0 chr11 36508608 36508909 -114274644 - AluSx SINE Alu -8 304 1 1646 169 6 49 chr11 36509651 36509977 -114273576 + AluJo SINE Alu 1 312 0 183 369 115 25 chr11 36510637 36511071 -114272482 + L2 LINE L2 2231 2703 -611 257 262 47 47 chr11 36511815 36511922 -114271631 + L2 LINE L2 3127 3233 -80 646 284 44 78 chr11 36511931 36512364 -114271189 + L1MCc LINE L1 5285 5702 -1239 22 35 0 0 chr11 36512892 36512921 -114270632 + AT_rich Low_complexity Low_complexity 1 29 0 3881 146 82 40 chr11 36513161 36514019 -114269534 - L1MB3 LINE L1 -8 6175 5282 26 0 0 0 chr11 36514028 36514054 -114269499 + AT_rich Low_complexity Low_complexity 1 26 0 310 227 0 0 chr11 36514245 36514311 -114269242 - Charlie8 DNA MER1_type -2229 188 123 2107 107 7 7 chr11 36514630 36514911 -114268642 + AluSp SINE Alu 1 281 -32 305 302 12 0 chr11 36515393 36515479 -114268074 + L2 LINE L2 3185 3271 -1 197 200 113 62 chr11 36516041 36516121 -114267432 - L3 LINE CR1 -237 1340 1257 293 295 157 19 chr11 36518068 36518278 -114265275 - L3 LINE CR1 -636 941 703 836 238 42 0 chr11 36518279 36518468 -114265085 + MIR SINE MIR 40 236 -26 935 185 82 0 chr11 36519330 36519514 -114264039 - MIR SINE MIR -33 229 31 11492 36 1 0 chr11 36519740 36521193 -114262360 - L1P LINE L1 -1361 4785 3331 7479 26 2 15 chr11 36521194 36521868 -114261685 + L1PA3 LINE L1 4819 5446 -709 2595 36 0 10 chr11 36521868 36522177 -114261376 + AluY SINE Alu 1 306 -5 7479 26 2 15 chr11 36522177 36522878 -114260675 + L1PA3 LINE L1 5446 6155 0 517 165 165 0 chr11 36522880 36523013 -114260540 - MER114 LTR ERV -493 155 1 22 35 0 0 chr11 36523262 36523291 -114260262 + AT_rich Low_complexity Low_complexity 1 29 0 2004 129 41 0 chr11 36523694 36523989 -114259564 + AluSp SINE Alu 5 311 -2 597 305 60 40 chr11 36524999 36525248 -114258305 - MIR SINE MIR -6 256 3 235 291 111 0 chr11 36525753 36525863 -114257690 + L1ME4a LINE L1 5929 6066 -55 216 111 0 0 chr11 36525863 36525899 -114257654 + (TG)n Simple_repeat Simple_repeat 1 36 0 235 291 111 0 chr11 36525899 36525960 -114257593 + L1ME4a LINE L1 6066 6119 -2 579 274 63 104 chr11 36526869 36527318 -114256235 + L1M4 LINE L1 1203 1749 -4885 387 271 8 8 chr11 36527329 36527451 -114256102 + L1ME3 LINE L1 5985 6106 -56 435 307 79 33 chr11 36527565 36527894 -114255659 + HAL1 LINE L1 1424 1767 -740 325 114 100 29 chr11 36528045 36528115 -114255438 + MADE1 DNA Mariner 5 79 -1 24 0 0 0 chr11 36528156 36528180 -114255373 + AT_rich Low_complexity Low_complexity 1 24 0 397 231 46 38 chr11 36528255 36528535 -114255018 + L1M4 LINE L1 2567 2849 -3795 21 36 0 0 chr11 36528679 36528707 -114254846 + AT_rich Low_complexity Low_complexity 1 28 0 2055 125 0 3 chr11 36528807 36529096 -114254457 + AluSq SINE Alu 1 288 -25 245 180 45 0 chr11 36529106 36529195 -114254358 + (TA)n Simple_repeat Simple_repeat 2 94 0 273 344 75 62 chr11 36529196 36529580 -114253973 - L2 LINE L2 -55 3217 2829 255 250 25 25 chr11 36530362 36530442 -114253111 + GA-rich Low_complexity Low_complexity 1 80 0 339 200 71 0 chr11 36530713 36530783 -114252770 + MIR SINE MIR 49 123 -139 243 224 129 12 chr11 36531059 36531144 -114252409 - L2 LINE L2 -37 3276 3182 216 345 66 56 chr11 36531761 36531958 -114251595 - L2 LINE L2 -5 3267 3069 341 191 15 0 chr11 36532159 36532227 -114251326 - MER3 DNA MER1_type -134 75 7 1350 205 45 24 chr11 36532312 36532687 -114250866 + L1MB8 LINE L1 5794 6176 -2 333 0 0 0 chr11 36533726 36533763 -114249790 + (CA)n Simple_repeat Simple_repeat 1 37 0 1354 92 0 0 chr11 36534802 36534975 -114248578 + AluY SINE Alu 122 294 -17 2691 80 15 8 chr11 36534983 36535383 -114248170 + L1PA10 LINE L1 5735 6137 -31 30 0 0 0 chr11 36535503 36535533 -114248020 + AT_rich Low_complexity Low_complexity 1 30 0 242 246 0 43 chr11 36535556 36535625 -114247928 - MER96B DNA MER1_type? -351 66 1 706 257 18 12 chr11 36535719 36535890 -114247663 + MIR SINE MIR 45 216 -46 1175 175 39 4 chr11 36535965 36536222 -114247331 - L1MD3 LINE L1 0 7995 7730 500 244 32 74 chr11 36537379 36537628 -114245925 + MIR SINE MIR 28 262 0 270 301 38 45 chr11 36537907 36538040 -114245513 + MIR SINE MIR 7 138 -124 288 133 0 0 chr11 36538044 36538089 -114245464 + MLT1C LTR MaLR 421 465 -2 289 120 80 0 chr11 36538095 36538145 -114245408 + MIR SINE MIR 140 193 -69 402 21 0 0 chr11 36538377 36538424 -114245129 + (TG)n Simple_repeat Simple_repeat 2 48 0 2116 108 7 0 chr11 36539894 36540200 -114243353 - AluSx SINE Alu 0 309 2 449 270 7 51 chr11 36540362 36540499 -114243054 + MIR SINE MIR 19 149 -59 496 118 97 0 chr11 36540582 36540675 -114242878 - MER58 DNA MER1_type -1 2419 2318 353 211 9 140 chr11 36540687 36540716 -114242837 - MER58 DNA MER1_type -303 83 52 2398 99 0 3 chr11 36540716 36541028 -114242525 - AluSx SINE Alu 0 312 2 353 211 9 140 chr11 36541028 36541112 -114242441 - MER58 DNA MER1_type -334 52 1 479 206 77 48 chr11 36541153 36541362 -114242191 - MER113 DNA MER1_type? -306 215 1 684 244 48 35 chr11 36541515 36541826 -114241727 - L1ME4a LINE L1 -223 5898 5584 549 331 50 0 chr11 36542466 36542626 -114240927 + MER91A DNA MER1_type 2 169 -27 222 311 91 30 chr11 36543035 36543167 -114240386 - MIR3 SINE MIR -31 177 38 2475 53 3 0 chr11 36543179 36543478 -114240075 - AluY SINE Alu -11 300 1 292 299 0 0 chr11 36543910 36543987 -114239566 - MIR SINE MIR -100 162 86 390 324 27 7 chr11 36544323 36544471 -114239082 + MIR3 SINE MIR 17 167 -41 257 169 52 65 chr11 36544682 36544759 -114238794 - LTR33A LTR ERVL -4 519 444 499 300 104 41 chr11 36545132 36545449 -114238104 - MLT1I LTR MaLR 0 409 73 732 192 0 0 chr11 36547046 36547176 -114236377 + FLAM_A SINE Alu 4 133 0 197 254 34 34 chr11 36547348 36547407 -114236146 + L2 LINE L2 3250 3308 -5 207 0 0 0 chr11 36547552 36547575 -114235978 + (TG)n Simple_repeat Simple_repeat 2 24 0 1948 141 4 0 chr11 36547575 36547852 -114235701 - AluSx SINE Alu -34 278 1 412 274 95 12 chr11 36547956 36548124 -114235429 + MIR SINE MIR 58 239 -23 491 251 65 6 chr11 36548766 36548948 -114234605 + MIR SINE MIR 22 212 -50 225 0 0 0 chr11 36548998 36549023 -114234530 + (A)n Simple_repeat Simple_repeat 1 25 0 1522 64 10 0 chr11 36549252 36549455 -114234098 + L1PB1 LINE L1 5945 6149 -2 365 315 51 28 chr11 36549533 36549711 -114233842 + MIR SINE MIR 79 260 -2 299 273 218 0 chr11 36550054 36550164 -114233389 - L2 LINE L2 0 3272 3139 348 224 129 54 chr11 36550251 36550398 -114233155 + MIR3 SINE MIR 33 190 -18 543 272 11 17 chr11 36551045 36551225 -114232328 - LTR33 LTR ERVL -240 281 103 196 368 0 0 chr11 36551615 36551691 -114231862 - MIR SINE MIR -7 255 180 553 239 0 0 chr11 36552890 36552999 -114230554 - L2 LINE L2 0 3313 3205 233 275 154 0 chr11 36552999 36553090 -114230463 - MER91C DNA MER1_type 0 140 36 354 298 48 8 chr11 36553142 36553266 -114230287 - MIR SINE MIR -92 170 42 246 269 15 0 chr11 36556197 36556264 -114227289 + MIR SINE MIR 86 153 -109 378 249 133 93 chr11 36556421 36556563 -114226990 - L1ME4a LINE L1 -30 6091 5956 1609 161 44 3 chr11 36556563 36556861 -114226692 - L1MB3 LINE L1 -1 6182 5873 378 249 133 93 chr11 36556861 36556983 -114226570 - L1ME4a LINE L1 -165 5956 5840 2265 112 7 0 chr11 36556983 36557279 -114226274 - AluSx SINE Alu -14 298 1 378 249 133 93 chr11 36557279 36557510 -114226043 - L1ME4a LINE L1 -281 5840 5575 2371 86 0 43 chr11 36558742 36559067 -114224486 + AluSx SINE Alu 1 311 -1 29 28 0 0 chr11 36559458 36559494 -114224059 + AT_rich Low_complexity Low_complexity 1 36 0 417 315 59 5 chr11 36559506 36559709 -114223844 - L1MC5 LINE L1 -60 7901 7688 1707 151 28 47 chr11 36560112 36560429 -114223124 - AluSq SINE Alu -2 311 1 392 207 69 86 chr11 36560429 36560603 -114222950 - Charlie7 DNA MER1_type -8 2604 2434 250 194 15 30 chr11 36560590 36560657 -114222896 - Charlie7 DNA MER1_type -2512 100 35 * 482 308 76 0 chr11 36560692 36560864 -114222689 + MIR SINE MIR 1 185 -77 702 168 0 98 chr11 36562386 36562529 -114221024 - FLAM_C SINE Alu -4 129 1 2392 174 0 18 chr11 36563013 36563449 -114220104 + L1MB5 LINE L1 5747 6174 0 230 142 57 132 chr11 36563457 36563563 -114219990 + HAL1 LINE L1 100 197 -2310 2337 263 136 55 chr11 36563878 36565576 -114217977 + HAL1 LINE L1 592 2425 -82 467 255 88 57 chr11 36565580 36565772 -114217781 - MIR SINE MIR -62 200 3 3731 131 35 13 chr11 36565905 36566507 -114217046 + L1MB3 LINE L1 5370 5984 -199 1056 249 132 85 chr11 36566604 36567417 -114216136 - HAL1 LINE L1 -2 2505 1655 250 297 59 10 chr11 36567777 36567878 -114215675 - MIR SINE MIR -6 256 151 533 262 117 87 chr11 36567920 36568389 -114215164 - L2 LINE L2 -3 3310 2828 3987 191 29 27 chr11 36569661 36570097 -114213456 + MER63C DNA MER1_type 83 523 -537 853 223 13 44 chr11 36570097 36570326 -114213227 + MER58A DNA MER1_type 3 224 0 3987 191 29 27 chr11 36570326 36570711 -114212842 + MER63C DNA MER1_type 523 906 -24 235 323 47 8 chr11 36571737 36571864 -114211689 - L2 LINE L2 -9 3304 3173 * 1527 242 226 13 chr11 36571851 36572533 -114211020 - L2 LINE L2 -412 2902 2076 404 294 65 7 chr11 36572949 36573102 -114210451 + MIR SINE MIR 53 214 -48 1230 187 0 9 chr11 36573525 36573744 -114209809 + Tigger5 DNA MER2_type 2107 2323 0 356 238 24 0 chr11 36574123 36574207 -114209346 - LTR67 LTR ERVL -1 556 471 9618 192 66 64 chr11 36574207 36577332 -114206221 + L1MDa LINE L1 19 3157 -3383 351 235 109 17 chr11 36578379 36578498 -114205055 + MIR SINE MIR 11 140 -122 522 280 10 48 chr11 36579003 36579027 -114204526 + MIR SINE MIR 43 66 -196 1550 197 13 10 chr11 36579027 36579332 -114204221 + AluJb SINE Alu 1 306 -6 522 280 10 48 chr11 36579332 36579514 -114204039 + MIR SINE MIR 66 241 -21 368 292 31 37 chr11 36579763 36579924 -114203629 + MIR SINE MIR 32 191 -71 357 311 22 23 chr11 36580177 36580362 -114203191 + MIR SINE MIR 62 242 -20 241 262 187 0 chr11 36580366 36580473 -114203080 - MIR SINE MIR -55 207 81 780 174 41 23 chr11 36581029 36581201 -114202352 - MER5B DNA MER1_type -3 175 1 2158 125 6 10 chr11 36581380 36581693 -114201860 - AluSx SINE Alu 0 312 1 737 319 23 21 chr11 36582000 36582435 -114201118 + L2 LINE L2 2057 2492 -822 1950 147 3 0 chr11 36582562 36582854 -114200699 + AluSx SINE Alu 14 306 -6 2433 117 20 3 chr11 36583286 36583638 -114199915 - L1PA15 LINE L1 -5 6160 5803 652 169 18 54 chr11 36583725 36583891 -114199662 - MIR SINE MIR 0 262 103 330 238 93 113 chr11 36584826 36585137 -114198416 - L2 LINE L2 -1 3312 3008 490 243 39 70 chr11 36585491 36585695 -114197858 - MIR SINE MIR -19 243 43 180 325 25 50 chr11 36587034 36587154 -114196399 - L2 LINE L2 -13 3300 3184 322 257 22 40 chr11 36587216 36587400 -114196153 + MER20B DNA MER1_type 2 214 -5 441 0 0 0 chr11 36587801 36587850 -114195703 + (TG)n Simple_repeat Simple_repeat 2 50 0 199 250 0 0 chr11 36588174 36588226 -114195327 + L2 LINE L2 3262 3313 0 477 329 66 21 chr11 36588353 36588596 -114194957 - MIR SINE MIR 0 262 9 331 244 47 47 chr11 36588864 36588991 -114194562 - L2 LINE L2 -218 3054 2928 255 131 16 98 chr11 36589016 36589077 -114194476 - MADE1 DNA Mariner 0 80 25 953 241 118 28 chr11 36589848 36589901 -114193652 - MLT1K LTR MaLR -2 586 539 1253 39 11 11 chr11 36589901 36590079 -114193474 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 953 241 118 28 chr11 36590079 36590531 -114193022 - MLT1K LTR MaLR -49 539 6 2137 94 14 0 chr11 36590531 36590808 -114192745 + AluSc SINE Alu 29 309 0 439 299 22 15 chr11 36591039 36591173 -114192380 - L2 LINE L2 0 3272 3138 2358 78 7 3 chr11 36591318 36591612 -114191941 - AluY SINE Alu -16 295 1 688 235 42 42 chr11 36591666 36591883 -114191670 + L2 LINE L2 3094 3310 -3 307 207 0 0 chr11 36592015 36592073 -114191480 - L2 LINE L2 -2 3311 3254 924 158 61 6 chr11 36592210 36592375 -114191178 + MLT1A2 LTR MaLR 1 174 -200 369 86 0 0 chr11 36592376 36592434 -114191119 + (TC)n Simple_repeat Simple_repeat 1 58 0 267 318 32 61 chr11 36592454 36592734 -114190819 - MLT1K LTR MaLR -158 430 159 188 267 67 0 chr11 36592950 36593025 -114190528 + L2 LINE L2 2983 3062 -210 214 233 50 117 chr11 36593106 36593146 -114190407 - MIR SINE MIR -78 184 143 1344 198 124 58 chr11 36593146 36593580 -114189973 - MLT1C LTR MaLR 0 467 5 214 233 50 117 chr11 36593580 36593659 -114189894 - MIR SINE MIR -119 143 73 2146 127 3 16 chr11 36593849 36594165 -114189388 - AluSx SINE Alu 0 312 1 337 298 107 0 chr11 36594355 36594476 -114189077 - L2 LINE L2 0 3313 3180 1670 199 0 7 chr11 36594672 36594964 -114188589 + AluJo SINE Alu 1 290 -22 434 300 62 19 chr11 36595102 36595262 -114188291 + MIR SINE MIR 25 191 -71 558 228 117 17 chr11 36595314 36595494 -114188059 + MIR SINE MIR 21 218 -44 1743 183 5 37 chr11 36595622 36596000 -114187553 - L1MB3 LINE L1 -1 6182 5817 276 344 45 6 chr11 36596655 36596812 -114186741 + L1ME LINE L1 5704 5866 -255 1578 208 86 36 chr11 36596920 36597396 -114186157 - MLT1D LTR MaLR 0 505 6 240 211 0 0 chr11 36597480 36597532 -114186021 + L2 LINE L2 3262 3313 0 183 156 0 0 chr11 36598072 36598104 -114185449 + (CA)n Simple_repeat Simple_repeat 1 32 0 298 298 11 0 chr11 36598131 36598225 -114185328 - MER117 DNA MER1_type -101 96 2 669 101 0 0 chr11 36598530 36598629 -114184924 + L1PB1 LINE L1 6053 6151 0 2322 105 0 3 chr11 36598647 36598951 -114184602 + AluSq SINE Alu 1 303 -10 333 200 0 0 chr11 36599089 36599154 -114184399 + L2 LINE L2 3005 3069 -244 334 306 130 0 chr11 36599182 36599290 -114184263 + L2 LINE L2 3150 3271 -1 1777 184 0 7 chr11 36599579 36599883 -114183670 - AluSx SINE Alu -10 302 1 295 179 62 116 chr11 36600108 36600181 -114183372 - L2 LINE L2 -33 3280 3213 350 294 48 8 chr11 36600181 36600307 -114183246 - MER94 DNA DNA -1 133 3 295 179 62 116 chr11 36600307 36600345 -114183208 - L2 LINE L2 -100 3213 3175 277 315 90 0 chr11 36600345 36600434 -114183119 - MER91A DNA MER1_type -10 186 90 200 337 10 0 chr11 36600656 36600754 -114182799 - L2 LINE L2 -132 3181 3083 301 220 0 33 chr11 36600845 36600936 -114182617 - L2 LINE L2 -230 3083 2996 190 333 0 14 chr11 36601101 36601173 -114182380 - L2 LINE L2 -57 3215 3145 628 211 34 0 chr11 36601245 36601392 -114182161 + MER103 DNA DNA 13 164 -2 2481 80 0 0 chr11 36601493 36601795 -114181758 + AluY SINE Alu 1 302 -9 198 279 0 15 chr11 36602022 36602090 -114181463 + MIR SINE MIR 99 165 -97 551 212 142 66 chr11 36605583 36605809 -114177744 - MIR SINE MIR 0 262 20 1931 157 7 0 chr11 36606547 36606846 -114176707 + AluSx SINE Alu 1 301 -11 223 163 41 20 chr11 36606846 36606895 -114176658 + GA-rich Low_complexity Low_complexity 116 165 0 1354 5 0 43 chr11 36606896 36607084 -114176469 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 652 232 36 12 chr11 36607455 36607623 -114175930 + MIR SINE MIR 8 179 -83 229 69 0 0 chr11 36607933 36607962 -114175591 + HsTC2 DNA Tc2 33 61 -1837 771 209 16 16 chr11 36609465 36609647 -114173906 + MIR SINE MIR 80 261 -1 346 350 82 6 chr11 36610572 36610755 -114172798 + MIR SINE MIR 46 242 -20 786 224 34 6 chr11 36610818 36610997 -114172556 + MIR SINE MIR 7 190 -72 738 279 5 0 chr11 36611059 36611256 -114172297 - MIR SINE MIR -60 202 5 2377 92 0 0 chr11 36611785 36612077 -114171476 - AluSg SINE Alu -18 292 1 182 300 0 29 chr11 36612555 36612625 -114170928 - MIR3 SINE MIR -52 156 89 289 303 16 25 chr11 36613045 36613167 -114170386 - MIR SINE MIR -140 122 2 309 225 14 0 chr11 36614401 36614472 -114169081 - MIR3 SINE MIR -39 169 98 204 200 0 0 chr11 36614774 36614814 -114168739 - MIR SINE MIR -115 147 108 699 216 65 43 chr11 36616505 36616736 -114166817 - MER106A DNA MER1_type 0 236 1 253 226 83 12 chr11 36618379 36618463 -114165090 - MIR3 SINE MIR -11 197 108 183 42 0 0 chr11 36618758 36618782 -114164771 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 685 300 36 4 chr11 36618801 36619054 -114164499 - MIR SINE MIR 0 262 2 774 266 15 14 chr11 36619685 36619915 -114163638 + MIR SINE MIR 19 248 -14 2043 90 30 8 chr11 36620783 36621051 -114162502 - AluY SINE Alu -13 298 25 282 227 86 23 chr11 36621111 36621239 -114162314 - L1ME4a LINE L1 0 6515 6380 * 701 276 96 27 chr11 36621238 36621629 -114161924 - L1ME4a LINE L1 -948 5592 5181 259 279 84 45 chr11 36621811 36621990 -114161563 - MLT1J1 LTR MaLR -230 216 31 2610 302 48 19 chr11 36622016 36623449 -114160104 - L1ME4a LINE L1 -1347 5193 3719 882 184 5 38 chr11 36623468 36623680 -114159873 - L1MA7 LINE L1 -2 6289 6085 361 221 0 39 chr11 36623682 36623758 -114159795 + Tigger5 DNA MER2_type 6 78 -2245 368 167 0 0 chr11 36623758 36623818 -114159735 - Tigger5 DNA MER2_type -3 2320 2261 3217 165 25 7 chr11 36623865 36624436 -114159117 - L1MA7 LINE L1 -202 6089 5509 414 271 62 13 chr11 36624436 36624661 -114158892 - L1ME4a LINE L1 -2837 3703 3468 * 543 240 72 25 chr11 36624658 36624919 -114158634 - L1MDa LINE L1 -4974 1556 1276 1144 270 51 36 chr11 36625344 36625811 -114157742 + L2 LINE L2 2827 3300 -13 461 296 25 20 chr11 36625814 36626010 -114157543 - MIR SINE MIR -35 227 31 321 280 117 37 chr11 36626853 36627067 -114156486 + MIR SINE MIR 20 250 -12 228 262 41 57 chr11 36627323 36627397 -114156156 - MER5A DNA MER1_type -69 120 47 1882 192 28 3 chr11 36627397 36627751 -114155802 + MLT1A1 LTR MaLR 1 363 -2 228 262 41 57 chr11 36627751 36627798 -114155755 - MER5A DNA MER1_type -142 47 1 192 266 31 0 chr11 36628075 36628139 -114155414 + MIR SINE MIR 79 144 -64 671 258 80 15 chr11 36628174 36628498 -114155055 - LTR33A LTR ERVL -2 521 139 213 322 41 16 chr11 36628507 36628628 -114154925 + MIR3 SINE MIR 78 201 -7 229 250 105 53 chr11 36629528 36629680 -114153873 + MER5A DNA MER1_type 2 161 -28 744 260 100 51 chr11 36629769 36630129 -114153424 - L1ME LINE L1 -390 5780 5398 2511 90 0 0 chr11 36630129 36630439 -114153114 - AluSq SINE Alu -3 310 1 744 260 100 51 chr11 36630439 36630467 -114153086 - L1ME LINE L1 -772 5398 5373 243 139 0 0 chr11 36631101 36631137 -114152416 - U2 snRNA snRNA -152 36 1 704 278 9 48 chr11 36633108 36633338 -114150215 - MIR SINE MIR -19 243 23 264 307 183 0 chr11 36633364 36633501 -114150052 + MER5A DNA MER1_type 28 189 0 966 117 394 0 chr11 36633549 36633762 -114149791 - L1PA11 LINE L1 0 6174 5878 392 326 8 0 chr11 36633897 36634029 -114149524 + MIR SINE MIR 17 149 -59 542 324 21 29 chr11 36634631 36634869 -114148684 - MIR SINE MIR -13 249 14 271 245 77 49 chr11 36634956 36635099 -114148454 - MER5B DNA MER1_type -6 172 26 1799 164 10 10 chr11 36635449 36635742 -114147811 + AluSx SINE Alu 1 293 -19 504 249 41 22 chr11 36635876 36636240 -114147313 + MER113 DNA MER1_type? 45 475 -46 402 194 23 132 chr11 36636270 36636399 -114147154 + L2 LINE L2 3189 3303 -10 198 71 0 0 chr11 36636961 36636989 -114146564 + (TAA)n Simple_repeat Simple_repeat 1 28 0 270 338 66 10 chr11 36637725 36637923 -114145630 - L2 LINE L2 -390 2924 2716 341 238 10 20 chr11 36638378 36638479 -114145074 + MIR SINE MIR 46 145 -63 211 220 0 0 chr11 36638667 36638717 -114144836 + (TA)n Simple_repeat Simple_repeat 2 51 0 702 289 189 3 chr11 36638827 36639177 -114144376 - L1MC4a LINE L1 -1884 5924 5510 2028 142 0 0 chr11 36639218 36639506 -114144047 - AluSx SINE Alu -22 290 3 2350 101 3 0 chr11 36639516 36639814 -114143739 - AluSp SINE Alu -14 299 1 393 289 21 59 chr11 36640719 36640906 -114142647 - MIR SINE MIR -51 211 32 534 281 65 10 chr11 36641766 36641965 -114141588 + MIR SINE MIR 49 258 -4 353 231 164 0 chr11 36641995 36642099 -114141454 - MIR SINE MIR -113 149 29 557 226 172 10 chr11 36642466 36642670 -114140883 + MIR SINE MIR 12 248 -14 366 238 89 0 chr11 36642962 36643063 -114140490 - MIR SINE MIR -74 188 79 545 192 96 0 chr11 36643106 36643210 -114140343 + MER81 DNA DNA 1 114 0 264 313 80 0 chr11 36643533 36643645 -114139908 + L2 LINE L2 3186 3306 -7 362 224 48 16 chr11 36643961 36644086 -114139467 + MER113 DNA MER1_type? 6 134 -387 202 179 36 18 chr11 36644404 36644460 -114139093 + CT-rich Low_complexity Low_complexity 1 57 0 523 304 19 39 chr11 36646369 36646626 -114136927 + MIR SINE MIR 11 262 0 2370 98 6 13 chr11 36646693 36647008 -114136545 - AluSq SINE Alu 0 313 1 297 285 66 0 chr11 36647125 36647262 -114136291 - MIR SINE MIR -6 256 111 188 265 108 48 chr11 36647644 36647727 -114135826 - MER5A DNA MER1_type -68 121 34 987 121 55 55 chr11 36647928 36648081 -114135472 + L1MA8 LINE L1 6064 6219 -72 243 0 0 0 chr11 36648081 36648108 -114135445 + (TG)n Simple_repeat Simple_repeat 2 28 0 987 121 55 55 chr11 36648108 36648153 -114135400 + L1MA8 LINE L1 6218 6262 -29 313 175 0 25 chr11 36648141 36648221 -114135332 + L1MA8 LINE L1 6213 6290 -1 * 218 189 0 0 chr11 36648683 36648720 -114134833 + (TG)n Simple_repeat Simple_repeat 2 38 0 586 0 27 0 chr11 36650079 36650153 -114133400 + (TCTA)n Simple_repeat Simple_repeat 3 78 0 2068 129 14 0 chr11 36654586 36654880 -114128673 - AluSx SINE Alu -14 298 1 313 253 140 27 chr11 36656356 36656506 -114127047 + MIR3 SINE MIR 30 196 -12 599 245 46 15 chr11 36658286 36658482 -114125071 + MIR SINE MIR 17 218 -44 306 0 0 0 chr11 36658607 36658641 -114124912 + (TG)n Simple_repeat Simple_repeat 1 34 0 1073 212 108 19 chr11 36659184 36659490 -114124063 + Charlie4a DNA MER1_type 1 333 -175 485 116 0 70 chr11 36659490 36659547 -114124006 - MADE1 DNA Mariner 0 80 29 1489 113 52 9 chr11 36659547 36659759 -114123794 + AluSg/x SINE Alu 85 305 -7 485 116 0 70 chr11 36659759 36659787 -114123766 - MADE1 DNA Mariner -51 29 1 * 563 203 55 39 chr11 36659787 36659963 -114123590 + Charlie4a DNA MER1_type 329 507 -1 201 284 59 39 chr11 36660127 36660229 -114123324 - MIR SINE MIR 0 262 159 1017 211 0 0 chr11 36660325 36660500 -114123053 + MER45A DNA AcHobo 4 178 0 507 246 123 0 chr11 36661780 36661951 -114121602 + MIR SINE MIR 70 261 -1 2130 141 0 3 chr11 36662527 36662832 -114120721 - AluSx SINE Alu -8 304 1 413 243 18 36 chr11 36664287 36664398 -114119155 + L2 LINE L2 3156 3264 -8 189 250 0 0 chr11 36666222 36666282 -114117271 + (TA)n Simple_repeat Simple_repeat 1 60 0 562 258 78 46 chr11 36666424 36666641 -114116912 + MIR SINE MIR 38 261 -1 1091 88 0 0 chr11 36666949 36667086 -114116467 - AluSp/q SINE Alu -8 305 169 712 271 57 28 chr11 36667657 36667904 -114115649 - MIR SINE MIR -1 261 8 393 309 82 47 chr11 36667988 36668221 -114115332 - MIR SINE MIR -2 260 20 2491 67 13 0 chr11 36668253 36668552 -114115001 + AluSp SINE Alu 1 303 -10 2454 86 0 0 chr11 36669401 36669704 -114113849 - AluSx SINE Alu -9 303 1 284 251 230 21 chr11 36669884 36670075 -114113478 - MIR SINE MIR -30 232 2 626 165 63 0 chr11 36670109 36670236 -114113317 + MER20 DNA MER1_type 85 219 0 293 250 67 50 chr11 36670596 36670716 -114112837 - MIR SINE MIR -118 144 23 349 313 59 74 chr11 36671508 36671764 -114111789 - MIR SINE MIR -9 253 2 192 153 106 71 chr11 36672227 36672312 -114111241 - MIR3 SINE MIR -7 201 114 510 241 94 49 chr11 36672360 36672584 -114110969 - MIR SINE MIR -1 261 28 381 195 24 0 chr11 36672788 36672870 -114110683 + L2 LINE L2 3230 3313 0 303 93 0 0 chr11 36674568 36674611 -114108942 + (TG)n Simple_repeat Simple_repeat 1 43 0 457 175 0 0 chr11 36676285 36676365 -114107188 + MER5A DNA MER1_type 27 106 -83 303 28 0 0 chr11 36677530 36677566 -114105987 + (TG)n Simple_repeat Simple_repeat 2 37 0 232 174 22 0 chr11 36677569 36677615 -114105938 + GA-rich Low_complexity Low_complexity 2 48 0 212 77 26 0 chr11 36678541 36678580 -114104973 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 406 195 195 0 chr11 36679636 36679764 -114103789 - MIR SINE MIR -6 256 104 210 118 0 0 chr11 36679840 36679874 -114103679 + (TA)n Simple_repeat Simple_repeat 2 35 0 211 162 0 0 chr11 36680098 36680135 -114103418 - L3b LINE CR1 -14 1569 1533 * 355 242 32 73 chr11 36680109 36680233 -114103320 - MIR3 SINE MIR -29 179 61 27 29 0 0 chr11 36682610 36682644 -114100909 + AT_rich Low_complexity Low_complexity 1 34 0 219 103 0 0 chr11 36684634 36684673 -114098880 + (TTCC)n Simple_repeat Simple_repeat 1 39 0 218 367 0 0 chr11 36684884 36684963 -114098590 - L3 LINE CR1 -107 1470 1392 1013 231 12 8 chr11 36686966 36687208 -114096345 + MIR SINE MIR 6 248 -14 396 71 0 0 chr11 36687529 36687585 -114095968 + (CA)n Simple_repeat Simple_repeat 2 57 0 484 261 104 31 chr11 36687894 36688316 -114095237 + L2 LINE L2 2731 3313 0 1996 138 0 0 chr11 36689000 36689276 -114094277 + AluJb SINE Alu 21 296 -16 499 296 6 45 chr11 36689700 36689876 -114093677 + MIR3 SINE MIR 40 208 0 1078 156 52 28 chr11 36691264 36691476 -114092077 - MER20 DNA MER1_type 0 219 3 350 297 110 0 chr11 36693544 36693662 -114089891 + L2 LINE L2 3142 3272 0 209 200 0 0 chr11 36694208 36694248 -114089305 - L2 LINE L2 -9 3263 3224 773 310 101 20 chr11 36694855 36695468 -114088085 - L2 LINE L2 -5 3308 2654 438 284 34 25 chr11 36695646 36695850 -114087703 - MIR SINE MIR 0 262 57 201 74 0 0 chr11 36695945 36695972 -114087581 + (CA)n Simple_repeat Simple_repeat 2 28 0 564 219 8 0 chr11 36695985 36696104 -114087449 + MER103 DNA DNA 44 163 -3 830 203 16 6 chr11 36696434 36696616 -114086937 - MER3 DNA MER1_type -25 184 1 297 315 45 0 chr11 36697179 36697290 -114086263 + L2 LINE L2 2910 3025 -288 1038 118 0 0 chr11 36697419 36697563 -114085990 + LTR8 LTR ERV1 443 586 -105 273 29 0 0 chr11 36697714 36697748 -114085805 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 242 326 121 0 chr11 36698047 36698179 -114085374 + MIR SINE MIR 40 187 -75 2250 95 3 36 chr11 36698212 36698517 -114085036 - AluSp SINE Alu -17 296 2 333 293 160 24 chr11 36698534 36698746 -114084807 - MIR SINE MIR -21 241 1 275 130 19 0 chr11 36699504 36699558 -114083995 + (TG)n Simple_repeat Simple_repeat 2 56 0 1655 197 3 16 chr11 36700284 36700599 -114082954 - AluJo SINE Alu -1 311 1 368 275 35 42 chr11 36700629 36700774 -114082779 + MIR SINE MIR 1 151 -57 276 303 34 57 chr11 36700858 36701033 -114082520 + MIR3 SINE MIR 35 205 -3 390 258 197 34 chr11 36701332 36701510 -114082043 - MIR SINE MIR -8 254 48 228 224 138 46 chr11 36701996 36702148 -114081405 - HAL1b LINE L1 -5 1343 1178 854 267 89 35 chr11 36702253 36702770 -114080783 - HAL1b LINE L1 -187 1161 617 598 325 30 63 chr11 36702850 36703277 -114080276 + MLT1K LTR MaLR 103 515 -73 515 311 80 26 chr11 36704281 36705120 -114078433 + L1ME LINE L1 676 1558 -4522 880 229 18 0 chr11 36705640 36705810 -114077743 - FAM SINE Alu -1 174 2 489 160 47 38 chr11 36705920 36706026 -114077527 - L1MA8 LINE L1 -275 6016 5910 * 4395 162 43 7 chr11 36706024 36707137 -114076416 - L1MA8 LINE L1 -666 5625 4472 300 27 0 0 chr11 36707894 36707931 -114075622 + (TG)n Simple_repeat Simple_repeat 2 38 0 465 302 130 12 chr11 36708152 36708321 -114075232 + MIR SINE MIR 1 189 -73 442 281 16 0 chr11 36708325 36708446 -114075107 - L2 LINE L2 -2 3311 3189 275 148 56 0 chr11 36708447 36708501 -114075052 + MIR SINE MIR 194 250 -12 2073 219 73 38 chr11 36708688 36709194 -114074359 + MLT1F LTR MaLR 9 532 -10 2275 85 5 123 chr11 36709347 36709760 -114073793 + THE1B LTR MaLR 1 364 0 189 147 0 0 chr11 36710404 36710438 -114073115 + (TG)n Simple_repeat Simple_repeat 1 34 0 221 364 11 11 chr11 36710814 36710902 -114072651 - MIR SINE MIR -147 115 28 695 299 45 5 chr11 36711445 36711646 -114071907 + MIR SINE MIR 2 210 -52 424 277 0 0 chr11 36711650 36711751 -114071802 - MIR SINE MIR -6 256 156 520 266 149 16 chr11 36712268 36712456 -114071097 - MIR SINE MIR -10 252 40 22 35 0 0 chr11 36713730 36713759 -114069794 + AT_rich Low_complexity Low_complexity 1 29 0 240 241 38 0 chr11 36713854 36713933 -114069620 - L1ME4a LINE L1 -188 5933 5852 623 313 31 40 chr11 36713960 36714190 -114069363 - MIR SINE MIR -3 259 34 452 219 9 0 chr11 36714211 36714316 -114069237 + HsTC2 DNA Tc2 1788 1893 -5 241 45 23 23 chr11 36715247 36715291 -114068262 + (TA)n Simple_repeat Simple_repeat 1 44 0 301 336 46 0 chr11 36715597 36715728 -114067825 - L1ME4a LINE L1 -796 5548 5412 1253 87 34 10 chr11 36715728 36715935 -114067618 + L1MA8 LINE L1 6075 6286 -5 275 255 34 47 chr11 36716304 36716453 -114067100 - L1P LINE L1 -1059 5087 4941 312 48 0 0 chr11 36717225 36717267 -114066286 + (CA)n Simple_repeat Simple_repeat 1 42 0 765 309 123 9 chr11 36717739 36718196 -114065357 - L1ME LINE L1 -361 5870 5362 378 143 45 0 chr11 36718196 36718329 -114065224 + (TA)n Simple_repeat Simple_repeat 1 139 0 243 0 0 0 chr11 36718397 36718424 -114065129 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 343 162 9 171 chr11 36718437 36718548 -114065005 + MLT1A2 LTR MaLR 1 93 -281 893 91 8 0 chr11 36718567 36718699 -114064854 - L1PB1 LINE L1 -1 6150 6018 * 25844 27 2 0 chr11 36718696 36722559 -114060994 - L1PA2 LINE L1 0 6155 2289 4006 19 0 0 chr11 36722561 36723029 -114060524 + L1P LINE L1 4455 4922 -1224 * 11530 54 85 5 chr11 36723023 36724561 -114058992 - L1PA2 LINE L1 -4473 1673 12 440 303 59 53 chr11 36724558 36725070 -114058483 - L1ME LINE L1 -855 5360 4846 * 1123 296 70 30 chr11 36725099 36725957 -114057596 - L1ME LINE L1 -1459 4756 3865 8517 166 38 26 chr11 36725992 36727761 -114055792 - L1 LINE L1 -1185 4961 3166 3181 132 0 34 chr11 36727761 36728291 -114055262 - L1PA15 LINE L1 -15 6150 5639 8517 166 38 26 chr11 36728291 36728390 -114055163 - L1 LINE L1 -2980 3166 3070 935 304 86 40 chr11 36728776 36729171 -114054382 + LTR16A1 LTR ERVL 45 457 0 24 32 0 0 chr11 36729454 36729485 -114054068 + AT_rich Low_complexity Low_complexity 1 31 0 2037 127 0 3 chr11 36729665 36729956 -114053597 - AluSg SINE Alu -20 290 1 1091 251 38 34 chr11 36730009 36730427 -114053126 - L1ME LINE L1 -2329 3886 3467 1839 97 25 18 chr11 36730432 36730710 -114052843 + L1PB1 LINE L1 5867 6146 -5 28 0 0 0 chr11 36730710 36730738 -114052815 + AT_rich Low_complexity Low_complexity 1 28 0 1638 199 0 7 chr11 36730740 36731031 -114052522 + AluJb SINE Alu 3 291 -21 240 88 53 0 chr11 36731038 36731095 -114052458 + (TA)n Simple_repeat Simple_repeat 1 60 0 6977 134 12 4 chr11 36731218 36732949 -114050604 - L1MA2 LINE L1 -5 7718 5974 6200 179 111 59 chr11 36732950 36734452 -114049101 + MER52A LTR ERV1 269 1755 0 10479 180 61 13 chr11 36734453 36739483 -114044070 - L1MA2 LINE L1 -1586 5979 19 2698 221 44 35 chr11 36739500 36740504 -114043049 - L1MEc LINE L1 -2868 3347 2366 2164 122 3 0 chr11 36740504 36740798 -114042755 - AluSq SINE Alu -18 295 1 2698 221 44 35 chr11 36740798 36740851 -114042702 - L1MEc LINE L1 -3849 2366 2315 506 213 44 50 chr11 36741536 36741765 -114041788 - L1MEc LINE L1 -3921 2322 2070 1878 281 86 27 chr11 36741858 36743097 -114040456 - L1MEc LINE L1 -4460 1936 625 1792 168 139 13 chr11 36743326 36743706 -114039847 + MSTA LTR MaLR 1 428 0 9760 135 5 40 chr11 36743708 36745336 -114038217 + MSTA-int LTR MaLR 3 1573 -7 1651 184 149 11 chr11 36745342 36745718 -114037835 + MSTA LTR MaLR 1 428 0 495 360 85 6 chr11 36745744 36746072 -114037481 - L1MEc LINE L1 -6013 383 30 219 315 0 0 chr11 36746077 36746131 -114037422 - MER5B DNA MER1_type -123 55 2 225 0 0 0 chr11 36746591 36746616 -114036937 + (TTG)n Simple_repeat Simple_repeat 3 27 0 804 273 64 29 chr11 36746716 36747027 -114036526 + MER102b DNA MER1_type 11 332 -9 1672 249 48 11 chr11 36747564 36748175 -114035378 + L1ME2 LINE L1 4156 4788 -1358 2272 172 26 28 chr11 36748177 36748636 -114034917 - MLT1C LTR MaLR -2 465 8 595 217 12 42 chr11 36748643 36748809 -114034744 + L1ME2 LINE L1 4784 4944 -1202 1142 256 61 65 chr11 36748811 36749288 -114034265 + L1ME2 LINE L1 5671 6145 -19 3886 251 114 43 chr11 36749589 36751451 -114032102 - L2 LINE L2 -2 3311 1330 498 244 46 0 chr11 36751704 36751835 -114031718 - L1ME LINE L1 -400 5721 5585 2111 268 70 24 chr11 36752172 36752759 -114030794 + MER115 DNA AcHobo 57 670 -23 196 287 219 56 chr11 36753204 36753507 -114030046 - L2 LINE L2 -76 3196 2848 270 316 38 87 chr11 36753528 36753816 -114029737 + L2 LINE L2 3034 3307 -6 2545 59 0 0 chr11 36753818 36754122 -114029431 + AluY SINE Alu 1 304 -7 211 189 0 0 chr11 36754133 36754170 -114029383 + (TGAA)n Simple_repeat Simple_repeat 3 39 0 294 349 54 108 chr11 36754316 36754631 -114028922 - L2 LINE L2 -9 3263 2966 2686 87 0 3 chr11 36754808 36755164 -114028389 - THE1A LTR MaLR 0 355 1 955 311 103 38 chr11 36755293 36756214 -114027339 + L1MEd LINE L1 268 1257 -4862 364 304 72 58 chr11 36756239 36756446 -114027107 + HAL1 LINE L1 1397 1606 -901 1457 249 31 0 chr11 36756464 36756781 -114026772 + L1M4b LINE L1 2 328 -6531 993 144 33 28 chr11 36756782 36756962 -114026591 + MLT1D LTR MaLR 1 181 -324 968 256 69 32 chr11 36756987 36757505 -114026048 + L1ME LINE L1 5157 5702 -468 655 291 100 9 chr11 36757623 36757843 -114025710 + MIR SINE MIR 23 262 0 334 321 80 59 chr11 36758034 36758221 -114025332 + MIR SINE MIR 8 198 -64 321 268 12 89 chr11 36758665 36758833 -114024720 - MIR SINE MIR -43 219 65 6171 183 23 15 chr11 36759245 36761391 -114022162 - L1PA16 LINE L1 0 6166 4004 3840 180 11 10 chr11 36761394 36762177 -114021376 + L1PA16 LINE L1 3242 4025 -2121 370 178 22 0 chr11 36763092 36763182 -114020371 + (TG)n Simple_repeat Simple_repeat 1 92 0 222 37 0 0 chr11 36764471 36764498 -114019055 + (CA)n Simple_repeat Simple_repeat 2 28 0 2412 95 0 0 chr11 36764648 36764953 -114018600 + AluY SINE Alu 1 305 -6 700 215 44 57 chr11 36765318 36765536 -114018017 - MIR SINE MIR -46 216 3 237 156 31 16 chr11 36765826 36765890 -114017663 + (TA)n Simple_repeat Simple_repeat 2 66 0 2536 189 99 32 chr11 36765904 36766115 -114017438 + MLT1E2 LTR MaLR 2 198 -428 1714 117 4 0 chr11 36766115 36766346 -114017207 + AluSg/x SINE Alu 69 300 -10 2536 189 99 32 chr11 36766346 36766720 -114016833 + MLT1E2 LTR MaLR 198 626 0 392 282 64 39 chr11 36767012 36767323 -114016230 + MLT1I LTR MaLR 46 407 -2 457 313 45 8 chr11 36767611 36767745 -114015808 - MIR SINE MIR -95 167 29 184 105 26 53 chr11 36768049 36768087 -114015466 - L2 LINE L2 -685 2629 2593 278 281 158 26 chr11 36768608 36768722 -114014831 + MIR SINE MIR 23 151 -111 27737 118 18 72 chr11 36768781 36773788 -114009765 + L1P LINE L1 9 4749 -1397 1172 196 67 25 chr11 36774446 36774686 -114008867 + MLT1C LTR MaLR 170 419 -48 343 227 23 0 chr11 36774705 36774793 -114008760 - L1MC4 LINE L1 -1339 6703 6614 239 202 0 101 chr11 36774763 36774862 -114008691 - L1MC4 LINE L1 -1339 6703 6615 * 278 284 23 0 chr11 36774837 36774925 -114008628 + L1MC4 LINE L1 6614 6703 -1339 282 239 0 43 chr11 36775040 36775132 -114008421 - L1MC4 LINE L1 -1340 6702 6615 * 313 271 0 21 chr11 36775052 36775148 -114008405 + L1MC4 LINE L1 6615 6708 -1334 524 269 95 87 chr11 36775238 36775377 -114008176 - L1ME4a LINE L1 0 6121 5985 2023 139 0 17 chr11 36775377 36775679 -114007874 - AluSx SINE Alu -15 297 1 524 269 95 87 chr11 36775679 36776023 -114007530 - L1ME4a LINE L1 -136 5985 5634 231 232 18 0 chr11 36776030 36776086 -114007467 - L1ME LINE L1 -448 5673 5617 1626 153 53 0 chr11 36776283 36776545 -114007008 + AluJo SINE Alu 14 289 -23 207 69 0 0 chr11 36776548 36776577 -114006976 + (TAAA)n Simple_repeat Simple_repeat 3 31 0 23 0 0 0 chr11 36777037 36777060 -114006493 + AT_rich Low_complexity Low_complexity 1 23 0 242 270 0 32 chr11 36777080 36777143 -114006410 + L2 LINE L2 3207 3267 -5 1952 244 73 67 chr11 36777385 36778271 -114005282 + HAL1 LINE L1 1603 2494 -13 217 255 0 0 chr11 36778908 36778959 -114004594 - MIR SINE MIR 0 262 212 782 178 97 0 chr11 36779073 36779258 -114004295 - MIR SINE MIR -43 219 17 2798 37 46 0 chr11 36779307 36779635 -114003918 - L1PA4 LINE L1 -8 6147 5805 622 276 124 54 chr11 36780161 36780548 -114003005 + L2 LINE L2 2814 3227 -86 2230 148 3 0 chr11 36781245 36781575 -114001978 + MER7A DNA MER2_type 18 346 0 310 267 22 0 chr11 36782161 36782251 -114001302 + GA-rich Low_complexity Low_complexity 3 94 0 449 318 85 76 chr11 36783274 36783602 -113999951 + L2 LINE L2 2847 3182 -90 1915 124 33 0 chr11 36783602 36783903 -113999650 - AluSx SINE Alu 0 310 1 449 318 85 76 chr11 36783903 36783995 -113999558 + L2 LINE L2 3182 3272 0 24 0 0 0 chr11 36784227 36784251 -113999302 + AT_rich Low_complexity Low_complexity 1 24 0 381 279 16 16 chr11 36784343 36784465 -113999088 - MIR SINE MIR -35 227 106 436 256 25 16 chr11 36784561 36784682 -113998871 - MIR3 SINE MIR -43 165 44 266 301 12 0 chr11 36785246 36785329 -113998224 - MIR SINE MIR -19 243 160 1437 158 58 70 chr11 36785348 36785676 -113997877 - L1ME1 LINE L1 -4 6162 5839 382 312 85 3 chr11 36785692 36785826 -113997727 - MIR SINE MIR -56 152 4 617 242 154 6 chr11 36786190 36786372 -113997181 + MIR SINE MIR 43 251 -11 341 240 27 0 chr11 36786484 36786559 -113996994 - L2 LINE L2 -5 3308 3232 21 37 0 56 chr11 36786621 36786675 -113996878 + AT_rich Low_complexity Low_complexity 1 51 0 189 74 0 0 chr11 36786683 36786710 -113996843 + (TA)n Simple_repeat Simple_repeat 2 28 0 307 273 152 36 chr11 36786710 36786875 -113996678 - MIR SINE MIR -33 229 46 201 125 100 0 chr11 36786987 36787027 -113996526 - MER91B DNA MER1_type -117 73 30 881 146 0 31 chr11 36787552 36787682 -113995871 + FLAM_A SINE Alu 2 127 -6 807 245 159 0 chr11 36787822 36788112 -113995441 - MER119 DNA MER1_type 0 583 248 272 251 50 82 chr11 36788260 36788425 -113995128 - MLT1L LTR MaLR -221 394 173 1975 148 83 15 chr11 36788425 36788750 -113994803 + MER7A DNA MER2_type 2 346 0 272 251 50 82 chr11 36788750 36788810 -113994743 - MLT1L LTR MaLR -442 173 113 283 298 96 69 chr11 36789124 36789312 -113994241 - L2 LINE L2 -346 2968 2776 331 308 118 51 chr11 36789534 36789771 -113993782 + MLT1K LTR MaLR 329 581 -7 242 244 0 0 chr11 36790304 36790349 -113993204 + MIR SINE MIR 78 122 -86 298 177 48 0 chr11 36790380 36790442 -113993111 - MIR SINE MIR -1 261 197 367 323 8 15 chr11 36790546 36790676 -113992877 - MIR3 SINE MIR -36 172 44 621 316 103 19 chr11 36790680 36791351 -113992202 + L1ME LINE L1 4364 5090 -1056 280 296 71 40 chr11 36791563 36791789 -113991764 + L1ME LINE L1 5384 5616 -554 * 40242 40 1 2 chr11 36791787 36796562 -113986991 - L1P LINE L1 -1367 4779 8 13654 199 24 18 chr11 36796560 36802274 -113981279 - L1 LINE L1 -1193 5974 189 * 5370 189 33 32 chr11 36802271 36803085 -113980468 - L1PA13 LINE L1 -4257 2540 1702 * 2392 103 0 0 chr11 36803085 36803396 -113980157 + AluY SINE Alu 1 311 0 5370 189 33 32 chr11 36803396 36803888 -113979665 - L1PA13 LINE L1 -5095 1702 1212 448 309 31 0 chr11 36804290 36804452 -113979101 - MIR SINE MIR -22 240 74 763 228 32 0 chr11 36806248 36806406 -113977147 - MIR SINE MIR -14 248 86 792 240 99 8 chr11 36806555 36806797 -113976756 - L1ME3A LINE L1 -25 6145 5882 1741 232 22 74 chr11 36806797 36807349 -113976204 - MER65B LTR ERV1 -6 525 3 1036 249 27 7 chr11 36807351 36807665 -113975888 - L1ME3A LINE L1 -279 5885 5550 445 233 19 13 chr11 36807662 36807821 -113975732 - L1ME3A LINE L1 -984 5162 5003 * 21 0 0 0 chr11 36807824 36807845 -113975708 + AT_rich Low_complexity Low_complexity 1 21 0 4642 141 21 0 chr11 36807876 36808728 -113974825 - L1MA8 LINE L1 -199 6092 5225 1613 158 108 9 chr11 36808728 36809044 -113974509 - MER47A DNA MER2_type 0 366 20 11303 182 35 12 chr11 36809050 36809950 -113973603 - L1MA8 LINE L1 -924 5222 4344 2270 102 0 0 chr11 36809950 36810245 -113973308 + AluSg SINE Alu 1 295 -15 11303 182 35 12 chr11 36810245 36811902 -113971651 - L1MA8 LINE L1 -1802 4344 2607 886 260 94 55 chr11 36811912 36812516 -113971037 - L1ME3A LINE L1 -1145 5001 4374 4761 141 4 4 chr11 36812525 36812931 -113970622 - L1PA16 LINE L1 -9 6157 5752 2706 17 0 0 chr11 36812931 36813231 -113970322 - AluYb8 SINE Alu 0 318 19 4761 141 4 4 chr11 36813231 36813809 -113969744 - L1PA16 LINE L1 -413 5753 5145 2149 209 18 27 chr11 36813817 36814187 -113969366 - L1 LINE L1 -1860 4286 3921 2604 48 7 3 chr11 36814187 36814496 -113969057 + AluY SINE Alu 1 310 -1 2149 209 18 27 chr11 36814496 36814674 -113968879 - L1 LINE L1 -2225 3921 3743 21 95 0 0 chr11 36814674 36814737 -113968816 + AT_rich Low_complexity Low_complexity 1 63 0 299 273 34 0 chr11 36814737 36814825 -113968728 + MIR SINE MIR 172 262 0 205 250 50 38 chr11 36815981 36816061 -113967492 - L2 LINE L2 -8 3305 3225 717 279 85 0 chr11 36816071 36816272 -113967281 - MIR SINE MIR -30 232 15 946 200 63 5 chr11 36816464 36816669 -113966884 - MER20 DNA MER1_type 0 219 3 7229 250 51 14 chr11 36816756 36819481 -113964072 + L1ME2 LINE L1 2645 5464 -702 212 268 0 36 chr11 36819570 36819626 -113963927 + MER5A DNA MER1_type 52 105 -84 755 248 86 13 chr11 36820196 36820430 -113963123 + MIR SINE MIR 7 257 -5 513 0 0 0 chr11 36820618 36820675 -113962878 + (TG)n Simple_repeat Simple_repeat 2 58 0 239 317 112 24 chr11 36821438 36821643 -113961910 + L2 LINE L2 2549 2771 -543 735 268 122 68 chr11 36821743 36821922 -113961631 + MLT1H1 LTR MaLR 22 190 -365 2389 96 0 0 chr11 36821922 36822225 -113961328 - AluSg SINE Alu -3 307 5 735 268 122 68 chr11 36822225 36822584 -113960969 + MLT1H1 LTR MaLR 190 551 -4 240 356 47 54 chr11 36822658 36822807 -113960746 + L2 LINE L2 2932 3079 -193 292 143 0 0 chr11 36822810 36822859 -113960694 - L2 LINE L2 -3 3310 3262 296 346 65 9 chr11 36822960 36823067 -113960486 + L2 LINE L2 3160 3272 0 850 184 14 63 chr11 36823754 36823977 -113959576 + MER20 DNA MER1_type 8 219 0 677 188 169 6 chr11 36823985 36824145 -113959408 - MER5A DNA MER1_type 0 189 4 408 338 12 12 chr11 36825103 36825263 -113958290 - MIR SINE MIR -1 261 102 336 306 53 71 chr11 36825668 36825838 -113957715 - MIR3 SINE MIR -35 173 7 1609 246 30 16 chr11 36826471 36827001 -113956552 + L1ME2 LINE L1 5619 6162 0 335 192 29 39 chr11 36827037 36827141 -113956412 + L1MC5 LINE L1 7815 7917 -44 239 260 0 0 chr11 36827948 36827998 -113955555 - L2 LINE L2 -8 3264 3215 1282 127 0 85 chr11 36828000 36828170 -113955383 + THE1C LTR MaLR 3 150 -225 2172 113 0 0 chr11 36828170 36828476 -113955077 - AluY SINE Alu 0 306 1 1282 127 0 85 chr11 36828476 36828540 -113955013 + THE1C LTR MaLR 150 218 -157 9058 109 47 8 chr11 36828540 36829939 -113953614 + THE1C-int LTR MaLR 128 1580 0 301 71 0 0 chr11 36829957 36829999 -113953554 - THE1C LTR MaLR -332 43 2 * 2367 121 28 0 chr11 36829963 36830327 -113953226 + THE1C LTR MaLR 2 375 0 244 247 37 49 chr11 36830328 36830409 -113953144 - L2 LINE L2 -54 3259 3180 345 304 22 0 chr11 36830514 36830606 -113952947 - MIR3 SINE MIR -42 166 73 255 307 57 21 chr11 36831163 36831303 -113952250 + L2 LINE L2 2698 2842 -472 273 279 139 16 chr11 36831414 36831543 -113952010 - L2 LINE L2 -4 3309 3165 572 316 131 33 chr11 36831582 36831911 -113951642 - L2 LINE L2 -354 2960 2574 464 245 28 0 chr11 36831911 36832017 -113951536 + MER81 DNA DNA 5 113 -1 572 316 131 33 chr11 36832017 36832137 -113951416 - L2 LINE L2 -740 2574 2467 491 271 86 7 chr11 36832596 36832747 -113950806 + MIR SINE MIR 35 197 -65 566 314 39 39 chr11 36832929 36833184 -113950369 + MIR SINE MIR 5 259 -3 2458 226 6 3 chr11 36833386 36834033 -113949520 - L1 LINE L1 -800 5346 4698 1930 208 4 0 chr11 36834033 36834494 -113949059 + L1 LINE L1 4253 4715 -1431 * 9653 201 25 4 chr11 36834493 36836969 -113946584 - L1P5 LINE L1 -666 5490 2970 182 298 0 0 chr11 36837094 36837141 -113946412 - MIR SINE MIR -21 241 195 242 344 107 0 chr11 36837179 36837310 -113946243 - MIR SINE MIR -10 252 108 190 265 0 0 chr11 36840185 36840234 -113943319 - L2 LINE L2 0 3313 3265 500 290 14 59 chr11 36840263 36840436 -113943117 + MIR SINE MIR 12 180 -63 628 335 143 22 chr11 36840809 36840904 -113942649 - L2 LINE L2 0 3313 3231 2886 161 14 43 chr11 36840904 36841480 -113942073 - MER89 LTR ERV1 0 559 1 628 335 143 22 chr11 36841480 36841852 -113941701 - L2 LINE L2 -82 3231 2791 533 282 52 85 chr11 36841854 36842255 -113941298 - L2 LINE L2 -636 2678 2291 2116 118 13 16 chr11 36842454 36842758 -113940795 + AluSx SINE Alu 10 312 0 1190 261 56 56 chr11 36842962 36843426 -113940127 + L2 LINE L2 1371 1834 -1480 555 246 7 0 chr11 36843441 36843579 -113939974 - L1ME1 LINE L1 -7 6159 6021 7354 196 38 14 chr11 36843584 36845533 -113938020 + L1M3f LINE L1 7 1907 -4421 2686 45 0 0 chr11 36845533 36845841 -113937712 + AluY SINE Alu 1 308 -3 7354 196 38 14 chr11 36845841 36847973 -113935580 + L1M3f LINE L1 1907 4172 -2156 460 82 0 14 chr11 36847973 36848046 -113935507 - HSMAR1 DNA Mariner -1215 72 1 655 274 53 10 chr11 36848098 36848306 -113935247 + L2 LINE L2 2533 2749 -565 274 211 39 39 chr11 36848306 36848434 -113935119 + L1MC5 LINE L1 7404 7531 -430 241 290 37 65 chr11 36848510 36848724 -113934829 + L1ME3A LINE L1 5962 6169 -1 545 280 96 85 chr11 36848726 36849227 -113934326 + L2 LINE L2 2737 3248 -65 1162 197 18 4 chr11 36849227 36849455 -113934098 - REP3 LTR ERV -11 551 321 2234 122 19 25 chr11 36849455 36849816 -113933737 - THE1B LTR MaLR 0 364 6 11882 90 5 1 chr11 36849816 36851389 -113932164 - THE1B-int LTR MaLR 0 1580 1 2157 120 21 51 chr11 36851389 36851764 -113931789 - THE1B LTR MaLR 0 364 1 1382 239 15 18 chr11 36851764 36852090 -113931463 - REP3 LTR ERV -237 325 1 274 253 0 84 chr11 36852202 36852297 -113931256 + MIR SINE MIR 14 100 -162 24 32 0 0 chr11 36852337 36852368 -113931185 + AT_rich Low_complexity Low_complexity 1 31 0 769 280 32 0 chr11 36852622 36852811 -113930742 - MIR SINE MIR -57 205 11 1152 22 0 0 chr11 36852889 36853023 -113930530 - AluY SINE Alu -3 308 175 341 265 141 21 chr11 36853065 36853265 -113930288 - L1ME LINE L1 -341 5780 5563 276 222 8 128 chr11 36853298 36853415 -113930138 - MER5A DNA MER1_type -69 120 18 607 304 172 37 chr11 36853573 36854310 -113929243 - L2 LINE L2 -37 3276 2454 214 349 0 0 chr11 36854345 36854408 -113929145 + MIR SINE MIR 56 118 -90 316 293 90 113 chr11 36854472 36854728 -113928825 - L2 LINE L2 -5 3267 3018 191 302 89 49 chr11 36855913 36856100 -113927453 + MIR SINE MIR 31 219 -43 271 331 81 24 chr11 36856248 36856372 -113927181 + MIR3 SINE MIR 63 193 -15 334 347 21 14 chr11 36856566 36856710 -113926843 - MIR3 SINE MIR -35 173 29 275 287 117 0 chr11 36856878 36856972 -113926581 + MIR SINE MIR 29 133 -129 1061 328 47 36 chr11 36858678 36859144 -113924409 + MLT1K LTR MaLR 54 524 -64 392 179 37 52 chr11 36859468 36859572 -113923981 + MER5A DNA MER1_type 4 105 -84 221 301 72 0 chr11 36859760 36859843 -113923710 - MIR SINE MIR -116 146 58 2864 225 45 20 chr11 36859859 36860790 -113922763 + L1ME1 LINE L1 5056 6014 -152 1678 151 29 118 chr11 36860793 36861209 -113922344 - MLT1B LTR MaLR 0 390 12 398 255 7 76 chr11 36861220 36861365 -113922188 + L1ME1 LINE L1 6011 6145 -21 21 0 0 0 chr11 36861374 36861395 -113922158 + AT_rich Low_complexity Low_complexity 1 21 0 564 15 0 0 chr11 36862604 36862669 -113920884 + (CA)n Simple_repeat Simple_repeat 2 66 0 289 120 80 0 chr11 36862901 36862951 -113920602 - MIR SINE MIR -69 193 140 312 133 0 0 chr11 36862957 36863002 -113920551 - MLT1C LTR MaLR -2 465 421 270 301 38 45 chr11 36863006 36863139 -113920414 - MIR SINE MIR -124 138 7 655 268 25 45 chr11 36863418 36863671 -113919882 - MIR SINE MIR 0 262 16 1267 174 39 8 chr11 36864815 36865073 -113918480 + L1MD3 LINE L1 7730 7995 0 690 257 18 12 chr11 36865148 36865319 -113918234 - MIR SINE MIR -46 216 45 284 238 50 79 chr11 36865413 36865514 -113918039 + MER96B DNA MER1_type? 1 98 -319 21 0 0 0 chr11 36865514 36865535 -113918018 + AT_rich Low_complexity Low_complexity 1 21 0 3052 75 13 0 chr11 36865655 36866053 -113917500 - L1PA10 LINE L1 -31 6137 5735 1912 88 0 0 chr11 36866061 36866299 -113917254 - AluY SINE Alu -17 294 57 1501 196 35 26 chr11 36866300 36866642 -113916911 + L1MB3 LINE L1 5463 5807 -376 193 130 0 56 chr11 36866642 36866696 -113916857 + (CATA)n Simple_repeat Simple_repeat 1 51 0 2259 129 13 53 chr11 36866728 36867051 -113916502 + L1MB3 LINE L1 5802 6108 -75 2359 92 3 3 chr11 36867051 36867357 -113916196 - AluSg SINE Alu -4 306 1 2259 129 13 53 chr11 36867357 36867429 -113916124 + L1MB3 LINE L1 6108 6181 -2 481 125 12 0 chr11 36867440 36867520 -113916033 - MER96B DNA MER1_type? -49 368 288 1180 202 0 9 chr11 36867520 36867748 -113915805 + AluJo SINE Alu 84 309 -3 428 223 16 41 chr11 36867748 36867869 -113915684 - MER96B DNA MER1_type? -127 290 173 1845 178 3 0 chr11 36868271 36868563 -113914990 + AluJo SINE Alu 1 293 -19 1180 173 4 31 chr11 36869169 36869394 -113914159 + MER20 DNA MER1_type 1 219 0 287 283 33 11 chr11 36869690 36869782 -113913771 + L2 LINE L2 3179 3272 0 318 281 55 16 chr11 36869936 36870064 -113913489 - L2 LINE L2 -10 3303 3171 251 276 69 0 chr11 36870266 36870353 -113913200 + Charlie7 DNA MER1_type 10 102 -2510 867 270 48 72 chr11 36870401 36870857 -113912696 - LTR16A LTR ERVL -5 445 1 993 248 38 4 chr11 36871252 36871490 -113912063 + MIR SINE MIR 7 252 -10 334 224 171 0 chr11 36871568 36871644 -113911909 - MLT1J LTR MaLR 0 511 423 345 161 0 81 chr11 36871716 36871803 -113911750 - MLT1J LTR MaLR -197 314 235 677 251 51 6 chr11 36872692 36872867 -113910686 - MIR SINE MIR -70 192 10 424 345 82 76 chr11 36872941 36873283 -113910270 - L2 LINE L2 -8 3264 2921 462 36 0 0 chr11 36873402 36873458 -113910095 + (CA)n Simple_repeat Simple_repeat 2 57 0 441 280 0 0 chr11 36874226 36874333 -113909220 + MIR SINE MIR 47 153 -109 2277 99 0 3 chr11 36874416 36874719 -113908834 - AluY SINE Alu -9 302 1 332 296 0 0 chr11 36875840 36875928 -113907625 - L1MC4 LINE L1 -1339 6703 6616 204 67 0 0 chr11 36875928 36875958 -113907595 + (TCTA)n Simple_repeat Simple_repeat 2 31 0 927 249 70 5 chr11 36876338 36876551 -113907002 + Charlie1 DNA MER1_type 13 239 -2522 710 214 14 0 chr11 36876536 36876676 -113906877 + Charlie1 DNA MER1_type 2620 2761 0 * 2422 151 55 19 chr11 36876682 36877099 -113906454 + MSTB1 LTR MaLR 1 432 0 427 301 216 0 chr11 36877195 36877371 -113906182 - MIR SINE MIR -4 258 45 577 310 22 33 chr11 36877379 36877653 -113905900 - L1ME LINE L1 -314 5807 5537 394 286 46 101 chr11 36877835 36878202 -113905351 + MARNA DNA Mariner 31 377 -209 1423 229 74 20 chr11 36878226 36878619 -113904934 + LTR16A1 LTR ERVL 44 457 0 1234 330 74 34 chr11 36878758 36879554 -113903999 + ERVL LTR ERVL 149 976 -4020 1922 340 68 36 chr11 36879728 36880256 -113903297 + ERVL LTR ERVL 1216 1725 -3760 2337 138 19 32 chr11 36880256 36880625 -113902928 + THE1B LTR MaLR 1 364 0 1922 340 68 36 chr11 36880625 36881821 -113901732 + ERVL LTR ERVL 1725 3074 -2411 377 250 0 0 chr11 36881821 36881897 -113901656 + LTR16A1 LTR ERVL 382 457 0 285 353 34 0 chr11 36881925 36882044 -113901509 + MIR SINE MIR 30 152 -56 434 222 105 39 chr11 36882715 36882868 -113900685 + MER103 DNA DNA 3 165 -1 6924 80 12 8 chr11 36883187 36884520 -113899033 + L1PA13 LINE L1 4821 6163 0 666 159 177 0 chr11 36884678 36884791 -113898762 - FLAM_C SINE Alu 0 133 1 2185 87 4 0 chr11 36884936 36885213 -113898340 - AluSg SINE Alu -1 309 32 831 271 40 33 chr11 36885222 36885524 -113898029 + L2 LINE L2 3005 3308 -5 487 298 83 0 chr11 36885547 36885715 -113897838 - MIR SINE MIR -77 185 4 247 244 73 12 chr11 36887457 36887539 -113896014 - MER91C DNA MER1_type -28 112 26 226 227 0 0 chr11 36888138 36888182 -113895371 - ORSL DNA AcHobo 0 275 232 180 111 0 0 chr11 36888896 36888923 -113894630 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 904 209 34 64 chr11 36889114 36889348 -113894205 - MIR SINE MIR -13 249 23 265 316 29 123 chr11 36889383 36889736 -113893817 - L2 LINE L2 -173 3099 2771 1099 283 52 24 chr11 36889962 36890456 -113893097 + L1ME LINE L1 5283 5800 -321 706 200 0 0 chr11 36890482 36890597 -113892956 - FLAM_C SINE Alu -26 117 3 493 291 18 24 chr11 36892422 36892587 -113890966 - MIR3 SINE MIR -29 179 16 180 0 0 0 chr11 36892728 36892748 -113890805 + (T)n Simple_repeat Simple_repeat 1 20 0 305 211 40 13 chr11 36892767 36892843 -113890710 - MER116 DNA Mariner 0 80 3 2402 46 0 7 chr11 36892875 36893201 -113890352 + AluY SINE Alu 2 325 0 341 277 109 0 chr11 36893606 36893707 -113889846 + L2 LINE L2 3201 3312 -1 216 97 0 0 chr11 36893771 36893802 -113889751 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 946 193 0 0 chr11 36893804 36893949 -113889604 - FRAM SINE Alu -31 145 1 428 275 243 5 chr11 36895844 36896033 -113887520 - MIR SINE MIR -27 235 2 233 328 151 21 chr11 36896045 36896231 -113887322 + L2 LINE L2 1935 2144 -1170 440 363 24 0 chr11 36896287 36896411 -113887142 + L2 LINE L2 3146 3272 0 799 318 42 15 chr11 36897118 36897520 -113886033 - HERV16 LTR ERVL -1576 4078 3666 2897 111 10 0 chr11 36897522 36897917 -113885636 + MER1A DNA MER1_type 131 529 0 1565 307 85 14 chr11 36897917 36897972 -113885581 - HERV16 LTR ERVL -1905 3091 3041 2334 156 4 87 chr11 36897972 36898422 -113885131 - MLT2D LTR ERVL 0 414 2 1565 307 85 14 chr11 36898422 36899139 -113884414 - HERV16 LTR ERVL -1955 3041 2573 924 181 0 12 chr11 36899140 36899300 -113884253 - FRAM SINE Alu -19 157 1 4015 291 85 25 chr11 36899328 36900244 -113883309 - HERV16 LTR ERVL -2469 2527 1668 1981 112 72 4 chr11 36900244 36900521 -113883032 - AluSg SINE Alu -14 296 1 4015 291 85 25 chr11 36900521 36901964 -113881589 - HERV16 LTR ERVL -3328 1668 1 1124 259 93 38 chr11 36901964 36902063 -113881490 - LTR16A LTR ERVL 0 450 358 486 292 0 0 chr11 36902063 36902176 -113881377 - MER81 DNA DNA 0 114 2 1124 259 93 38 chr11 36902176 36902497 -113881056 - LTR16A LTR ERVL -92 358 7 1923 209 86 70 chr11 36902883 36903473 -113880080 + LTR9 LTR ERV1 2 601 -11 4518 165 58 28 chr11 36903698 36904521 -113879032 + MER21B LTR ERV1 5 852 -11 2407 125 9 9 chr11 36904603 36904940 -113878613 + MER1B DNA MER1_type 1 337 0 344 274 58 106 chr11 36905707 36905933 -113877620 - MLT1K LTR MaLR -41 547 333 3327 161 115 58 chr11 36906314 36906794 -113876759 + LTR1B LTR ERV1 1 545 -281 2268 115 66 20 chr11 36906794 36907142 -113876411 + THE1B LTR MaLR 1 364 0 3327 161 115 58 chr11 36907142 36907442 -113876111 + LTR1B LTR ERV1 545 826 0 453 252 49 0 chr11 36908595 36908718 -113874835 - MLT1H LTR MaLR -297 252 124 736 127 9 27 chr11 36908744 36908854 -113874699 - AluSg/x SINE Alu -26 286 179 524 167 10 31 chr11 36908845 36908941 -113874612 - AluSg/x SINE Alu -93 217 124 * 1542 56 0 0 chr11 36908941 36909121 -113874432 - L1PA5 LINE L1 -5 6149 5970 246 273 132 41 chr11 36909352 36909473 -113874080 + MIR SINE MIR 16 147 -115 2026 122 0 14 chr11 36911224 36911533 -113872020 - AluSx SINE Alu 0 305 1 311 224 79 13 chr11 36912435 36912511 -113871042 + MIR SINE MIR 108 188 -74 2206 104 16 3 chr11 36912696 36913003 -113870550 + AluSx SINE Alu 1 311 -1 4712 98 0 5 chr11 36913013 36913669 -113869884 + L1PA14 LINE L1 5493 6145 -16 1785 191 3 0 chr11 36916028 36916326 -113867227 + AluSx SINE Alu 1 299 -13 645 164 23 18 chr11 36916640 36916915 -113866638 + (TA)n Simple_repeat Simple_repeat 1 276 0 400 145 0 0 chr11 36916917 36916979 -113866574 + Tigger3b DNA MER2_type 30 91 -1140 2242 147 11 46 chr11 36916995 36917432 -113866121 - LTR3 LTR ERVK -10 422 1 * 6079 120 60 22 chr11 36917432 36918535 -113865018 + Tigger3b DNA MER2_type 87 1231 0 272 256 167 0 chr11 36920169 36920259 -113863294 + MIR SINE MIR 148 252 -10 21 57 0 0 chr11 36920620 36920655 -113862898 + AT_rich Low_complexity Low_complexity 1 35 0 2827 115 5 2 chr11 36921063 36921481 -113862072 - L1PA15 LINE L1 -2 6163 5745 285 247 26 0 chr11 36925780 36925857 -113857696 - L3b LINE CR1 -227 1356 1278 1508 150 0 68 chr11 36925973 36926239 -113857314 + AluJb SINE Alu 40 287 -25 222 37 0 0 chr11 36927450 36927477 -113856076 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 464 314 81 88 chr11 36927490 36927625 -113855928 + L1MEd LINE L1 3 137 -5982 5248 57 47 1 chr11 36927625 36928310 -113855243 + L1PA7 LINE L1 5428 6143 -11 464 314 81 88 chr11 36928310 36928642 -113854911 + L1MEd LINE L1 137 467 -5652 3311 132 64 56 chr11 36929062 36929701 -113853852 + LTR9B LTR ERV1 1 644 0 51094 138 42 21 chr11 36929701 36930372 -113853181 + HUERS-P3 LTR ERV1 1 656 -8263 2468 48 0 3 chr11 36930372 36930664 -113852889 - AluY SINE Alu 0 311 21 705 67 0 0 chr11 36930664 36930754 -113852799 - AluY SINE Alu -221 90 1 51094 138 42 21 chr11 36930754 36938726 -113844827 + HUERS-P3 LTR ERV1 655 8919 0 618 211 136 11 chr11 36939607 36939872 -113843681 - LTR37A LTR ERV1 -35 391 94 377 295 70 0 chr11 36940145 36940274 -113843279 + MIR3 SINE MIR 31 168 -40 729 277 92 94 chr11 36940833 36941291 -113842262 - L2 LINE L2 -33 3280 2824 1026 302 113 11 chr11 36941302 36941822 -113841731 - L2 LINE L2 -1640 1674 1102 183 314 163 45 chr11 36941840 36942104 -113841449 - L2 LINE L2 -1408 1906 1612 814 214 204 18 chr11 36942240 36942460 -113841093 - MIR SINE MIR 0 262 2 237 346 83 6 chr11 36942484 36942640 -113840913 - L2 LINE L2 -1880 1434 1267 197 313 0 10 chr11 36942752 36942848 -113840705 - L2 LINE L2 -2509 805 711 538 273 79 19 chr11 36943099 36943315 -113840238 + Charlie8 DNA MER1_type 24 252 -2165 512 314 198 51 chr11 36943980 36944037 -113839516 + L2 LINE L2 2231 2278 -994 3281 67 30 5 chr11 36944037 36944470 -113839083 + MLT2A1 LTR ERVL 1 444 0 512 314 198 51 chr11 36944470 36944868 -113838685 + L2 LINE L2 2278 2616 -656 4672 59 101 0 chr11 36944868 36945491 -113838062 - LTR12 LTR ERV1 -2 686 1 512 314 198 51 chr11 36945491 36945945 -113837608 + L2 LINE L2 2616 3268 -4 2299 99 10 0 chr11 36946307 36946611 -113836942 + AluSq SINE Alu 1 307 -6 21 57 0 0 chr11 36947981 36948016 -113835537 + GC_rich Low_complexity Low_complexity 1 35 0 220 272 126 29 chr11 36949442 36949545 -113834008 - MER5A DNA MER1_type -43 146 34 1592 133 41 38 chr11 36949747 36950040 -113833513 + AluJo SINE Alu 8 301 -11 1721 180 82 43 chr11 36950221 36950683 -113832870 - MLT1D LTR MaLR -3 502 23 185 305 0 61 chr11 36950750 36950832 -113832721 - L3 LINE CR1 -199 1378 1302 248 316 120 13 chr11 36951060 36951218 -113832335 - MIR SINE MIR -9 253 79 199 244 12 98 chr11 36951372 36951454 -113832099 - L2 LINE L2 -27 3245 3171 203 337 22 0 chr11 36951644 36951733 -113831820 - L2 LINE L2 -290 2982 2892 325 280 190 41 chr11 36952104 36952493 -113831060 + Charlie8 DNA MER1_type 84 530 -1887 194 0 39 0 chr11 36953184 36953210 -113830343 + (TTTTA)n Simple_repeat Simple_repeat 1 27 0 224 281 182 25 chr11 36953467 36953588 -113829965 - MIR SINE MIR -53 209 70 302 314 58 15 chr11 36953624 36953761 -113829792 - MLT1L LTR MaLR -292 323 181 491 198 0 36 chr11 36953911 36954022 -113829531 - MIR SINE MIR 0 262 156 330 26 0 0 chr11 36954449 36954488 -113829065 + (TG)n Simple_repeat Simple_repeat 2 40 0 452 252 257 5 chr11 36955771 36955821 -113827732 - MIR SINE MIR -3 259 223 1873 123 74 0 chr11 36955821 36956105 -113827448 - AluSx SINE Alu -7 305 1 452 252 257 5 chr11 36956105 36956260 -113827293 - MIR SINE MIR -39 223 2 36 0 0 0 chr11 36956272 36956308 -113827245 + AT_rich Low_complexity Low_complexity 1 36 0 283 241 105 68 chr11 36956310 36956472 -113827081 - HAL1 LINE L1 -7 2500 2333 364 242 191 17 chr11 36956524 36956702 -113826851 - HAL1 LINE L1 -311 2196 1988 463 242 50 8 chr11 36956823 36957080 -113826473 - HAL1 LINE L1 -2030 477 96 255 260 24 24 chr11 36957157 36957280 -113826273 - L1ME4a LINE L1 -30 6091 5969 1121 132 72 72 chr11 36957325 36957560 -113825993 + MER46A DNA MER2_type 1 235 -1 21 36 0 0 chr11 36959553 36959581 -113823972 + AT_rich Low_complexity Low_complexity 1 28 0 1455 147 41 0 chr11 36960820 36961065 -113822488 - AluSx SINE Alu -12 300 46 230 56 28 0 chr11 36962559 36962595 -113820958 + (TTG)n Simple_repeat Simple_repeat 2 38 0 351 0 0 0 chr11 36963397 36963436 -113820117 + (TG)n Simple_repeat Simple_repeat 2 40 0 1776 271 70 30 chr11 36963984 36964588 -113818965 + L1MC5 LINE L1 5307 5934 -1874 3256 217 75 70 chr11 36965160 36966156 -113817397 + L1MC5 LINE L1 6625 7630 -331 1967 144 3 7 chr11 36966156 36966462 -113817091 - AluJb SINE Alu -6 306 2 3256 217 75 70 chr11 36966462 36966745 -113816808 + L1MC5 LINE L1 7630 7910 -51 38 0 0 0 chr11 36966745 36966783 -113816770 + AT_rich Low_complexity Low_complexity 1 38 0 285 344 142 24 chr11 36968003 36968215 -113815338 - L2 LINE L2 -162 3110 2874 2125 119 20 0 chr11 36968363 36968666 -113814887 - AluSx SINE Alu -1 311 3 680 238 35 62 chr11 36968997 36969253 -113814300 - L2 LINE L2 -870 2444 2196 759 274 94 7 chr11 36969317 36969594 -113813959 + L1MEd LINE L1 502 802 -5317 712 235 35 56 chr11 36969622 36969941 -113813612 + L1MEd LINE L1 904 1215 -4904 333 0 0 0 chr11 36971053 36971090 -113812463 + (TG)n Simple_repeat Simple_repeat 1 37 0 1481 205 45 24 chr11 36972129 36972504 -113811049 - L1MB8 LINE L1 -2 6176 5794 366 191 15 0 chr11 36972589 36972657 -113810896 + MER3 DNA MER1_type 7 75 -134 218 348 65 14 chr11 36972913 36973051 -113810502 + L2 LINE L2 3164 3308 -5 244 224 129 12 chr11 36973668 36973753 -113809800 + L2 LINE L2 3182 3276 -37 344 294 73 0 chr11 36974029 36974138 -113809415 - MIR SINE MIR -139 123 7 258 259 0 49 chr11 36974371 36974452 -113809101 + CT-rich Low_complexity Low_complexity 6 82 0 251 341 75 62 chr11 36975231 36975615 -113807938 + L2 LINE L2 2829 3217 -55 266 169 45 0 chr11 36975616 36975705 -113807848 + (TA)n Simple_repeat Simple_repeat 2 94 0 2011 125 0 3 chr11 36975715 36976004 -113807549 - AluSq SINE Alu -25 288 1 21 36 0 0 chr11 36976104 36976132 -113807421 + AT_rich Low_complexity Low_complexity 1 28 0 475 231 46 38 chr11 36976276 36976556 -113806997 - L1M4 LINE L1 -3795 2849 2567 24 0 0 0 chr11 36976631 36976655 -113806898 + AT_rich Low_complexity Low_complexity 1 24 0 334 114 100 29 chr11 36976696 36976766 -113806787 - MADE1 DNA Mariner -1 79 5 548 307 79 33 chr11 36976917 36977246 -113806307 - HAL1 LINE L1 -740 1767 1424 427 269 155 12 chr11 36977321 36977482 -113806071 - L1ME3 LINE L1 -2 6168 5985 586 276 63 104 chr11 36977493 36977942 -113805611 - L1M4 LINE L1 -4885 1749 1203 298 285 111 0 chr11 36978851 36978912 -113804641 - L1ME4a LINE L1 -2 6119 6066 216 111 0 0 chr11 36978912 36978948 -113804605 + (CA)n Simple_repeat Simple_repeat 1 36 0 298 285 111 0 chr11 36978948 36979058 -113804495 - L1ME4a LINE L1 -55 6066 5929 605 305 60 40 chr11 36979563 36979812 -113803741 + MIR SINE MIR 3 256 -6 1947 129 41 0 chr11 36980822 36981117 -113802436 - AluSp SINE Alu -2 311 5 22 35 0 0 chr11 36981520 36981549 -113802004 + AT_rich Low_complexity Low_complexity 1 29 0 563 165 165 0 chr11 36981798 36981931 -113801622 + MER114 LTR ERV 1 155 -493 7437 27 0 2 chr11 36981933 36982634 -113800919 - L1PA3 LINE L1 0 6155 5493 2553 36 0 10 chr11 36982634 36982943 -113800610 - AluY SINE Alu -5 306 1 7437 27 0 2 chr11 36982943 36983617 -113799936 - L1PA3 LINE L1 -662 5493 4819 11987 36 1 0 chr11 36983618 36985071 -113798482 + L1P LINE L1 3331 4785 -1361 935 185 82 0 chr11 36985297 36985481 -113798072 + MIR SINE MIR 31 229 -33 840 238 42 0 chr11 36986343 36986532 -113797021 - MIR SINE MIR -26 236 40 291 295 157 19 chr11 36986533 36986743 -113796810 + L3 LINE CR1 703 941 -636 198 200 113 62 chr11 36988694 36988774 -113794779 + L3 LINE CR1 1257 1340 -237 309 302 12 0 chr11 36989336 36989422 -113794131 - L2 LINE L2 -1 3271 3185 2074 103 7 7 chr11 36989904 36990185 -113793368 - AluSp SINE Alu -32 281 1 336 227 0 0 chr11 36990504 36990570 -113792983 + Charlie8 DNA MER1_type 123 188 -2229 26 0 0 0 chr11 36990761 36990787 -113792766 + AT_rich Low_complexity Low_complexity 1 26 0 4174 144 82 40 chr11 36990796 36991654 -113791899 + L1MB3 LINE L1 5282 6175 -8 22 35 0 0 chr11 36991894 36991923 -113791630 + AT_rich Low_complexity Low_complexity 1 29 0 332 297 47 58 chr11 36992451 36992832 -113790721 - L1ME LINE L1 -1239 5702 5326 262 262 47 47 chr11 36992893 36993000 -113790553 - L2 LINE L2 -80 3233 3127 1584 169 6 49 chr11 36994838 36995164 -113788389 - AluJo SINE Alu 0 312 1 2136 127 10 0 chr11 36995908 36996207 -113787346 + AluSx SINE Alu 3 304 -8 2162 212 43 69 chr11 36996596 36997265 -113786288 - MLT1E1 LTR MaLR 0 654 3 2340 115 0 0 chr11 36998424 36998736 -113784817 - AluSx SINE Alu 0 312 1 1591 183 38 7 chr11 36999572 36999862 -113783691 + AluJo SINE Alu 1 299 -13 878 200 42 50 chr11 37000276 37000516 -113783037 - L1M4 LINE L1 -3220 2926 2689 1907 169 135 17 chr11 37000516 37000872 -113782681 + MER47B DNA MER2_type 20 417 -1 2212 108 7 10 chr11 37000922 37001229 -113782324 - AluSg SINE Alu -4 306 1 222 300 14 0 chr11 37001317 37001387 -113782166 + (TATG)n Simple_repeat Simple_repeat 2 72 0 23 0 0 0 chr11 37001931 37001954 -113781599 + AT_rich Low_complexity Low_complexity 1 23 0 1141 177 59 5 chr11 37002237 37002457 -113781096 + MER46A DNA MER2_type 1 232 -4 5174 251 116 24 chr11 37002841 37003980 -113779573 - L1ME LINE L1 -1944 4997 3964 2007 146 0 3 chr11 37003980 37004282 -113779271 - AluSx SINE Alu -10 302 2 5174 251 116 24 chr11 37004282 37005594 -113777959 - L1ME LINE L1 -2977 3964 2220 3529 163 44 30 chr11 37005594 37006228 -113777325 - L1MB3 LINE L1 0 6183 5536 1448 178 73 4 chr11 37006228 37006503 -113777050 + AluJo SINE Alu 1 294 -18 3529 163 44 30 chr11 37006503 37006590 -113776963 - L1MB3 LINE L1 -647 5536 5452 5174 251 116 24 chr11 37006590 37007228 -113776325 - L1ME LINE L1 -4721 2220 1642 953 216 4 17 chr11 37007229 37007461 -113776092 - L1ME LINE L1 -6178 245 17 548 273 252 11 chr11 37008019 37008305 -113775248 - L2 LINE L2 -963 2351 1997 354 226 37 63 chr11 37009151 37009341 -113774212 - Charlie7 DNA MER1_type -11 2601 2417 206 241 0 37 chr11 37009905 37009959 -113773594 - MIR SINE MIR -59 149 98 1784 261 99 46 chr11 37009979 37010967 -113772586 - L2 LINE L2 -50 3263 2228 304 53 0 0 chr11 37011114 37011152 -113772401 + tRNA-Gln-CAG tRNA tRNA 1 38 -37 21 57 0 0 chr11 37011230 37011265 -113772288 + AT_rich Low_complexity Low_complexity 1 35 0 391 344 50 55 chr11 37011442 37011499 -113772054 - L1 LINE L1 -2500 3646 3590 25 0 0 0 chr11 37011499 37011524 -113772029 + AT_rich Low_complexity Low_complexity 1 25 0 391 344 50 55 chr11 37011524 37011843 -113771710 - L1 LINE L1 -2556 3590 3248 333 206 0 0 chr11 37011955 37012028 -113771525 - LTR30 LTR ERV1 -98 624 552 7474 35 0 0 chr11 37012583 37013913 -113769640 - L1PA4 LINE L1 0 6155 4827 13611 43 0 2 chr11 37013913 37015681 -113767872 + L1PA4 LINE L1 3046 4812 -1334 2135 118 0 0 chr11 37016745 37017034 -113766519 + AluSc SINE Alu 1 289 -20 2036 153 0 10 chr11 37017607 37017915 -113765638 + AluSx SINE Alu 1 305 -7 26 30 0 0 chr11 37018133 37018166 -113765387 + AT_rich Low_complexity Low_complexity 1 33 0 456 310 107 15 chr11 37018498 37018695 -113764858 - MIR SINE MIR -25 237 23 285 29 0 0 chr11 37019314 37019348 -113764205 + (TG)n Simple_repeat Simple_repeat 2 35 0 513 284 89 36 chr11 37019835 37020060 -113763493 - MIR SINE MIR -24 238 2 1664 127 76 10 chr11 37020337 37020564 -113762989 + MER44D DNA MER2_type 5 215 -2276 1251 167 173 13 chr11 37020564 37020864 -113762689 - MER7A DNA MER2_type 0 346 1 1664 127 76 10 chr11 37020864 37020950 -113762603 + MER44D DNA MER2_type 215 609 0 282 351 153 16 chr11 37021197 37021505 -113762048 + L2 LINE L2 2955 3304 -9 232 265 59 22 chr11 37022788 37022924 -113760629 + L1ME LINE L1 5528 5668 -453 28 0 0 0 chr11 37023052 37023080 -113760473 + AT_rich Low_complexity Low_complexity 1 28 0 2137 132 10 3 chr11 37023211 37023521 -113760032 + AluSx SINE Alu 1 312 0 1473 231 120 10 chr11 37024194 37024701 -113758852 - L1ME3A LINE L1 -250 5920 5358 1777 251 107 23 chr11 37024761 37025636 -113757917 - L1ME3A LINE L1 -867 5279 4298 3096 131 64 55 chr11 37025636 37026231 -113757322 - MER7C DNA MER2_type -1 601 2 1777 251 107 23 chr11 37026231 37026414 -113757139 - L1ME3A LINE L1 -1848 4298 4132 1788 155 0 24 chr11 37028335 37028632 -113754921 - AluJb SINE Alu -22 290 1 23 33 0 0 chr11 37029491 37029521 -113754032 + AT_rich Low_complexity Low_complexity 1 30 0 253 294 130 4 chr11 37030996 37031104 -113752449 + MIR SINE MIR 30 149 -59 195 309 95 12 chr11 37031252 37031336 -113752217 - MIR SINE MIR -150 112 22 225 162 0 0 chr11 37032074 37032111 -113751442 - LTR41 LTR ERVL -736 37 1 2148 87 56 0 chr11 37033665 37033951 -113749602 - AluSg SINE Alu -6 304 3 2195 119 3 7 chr11 37033961 37034271 -113749282 - AluJo SINE Alu -3 309 1 657 243 41 82 chr11 37034443 37034686 -113748867 - MIR SINE MIR -1 261 29 3427 45 0 0 chr11 37036214 37036632 -113746921 - L1PA7 LINE L1 -11 6143 5726 3741 183 75 14 chr11 37037188 37038064 -113745489 + MER63C DNA MER1_type 1 930 0 22 0 0 0 chr11 37038840 37038862 -113744691 + AT_rich Low_complexity Low_complexity 1 22 0 341 298 42 123 chr11 37040411 37040467 -113743086 + L2 LINE L2 2997 3056 -216 2061 116 3 17 chr11 37040467 37040761 -113742792 - AluSx SINE Alu -22 290 1 341 298 42 123 chr11 37040761 37040989 -113742564 + L2 LINE L2 3056 3258 -14 649 123 175 0 chr11 37042218 37042332 -113741221 + AluJo SINE Alu 1 134 -178 603 213 58 32 chr11 37042762 37042917 -113740636 + MIR SINE MIR 55 213 -49 329 369 19 6 chr11 37042990 37043147 -113740406 - MIR3 SINE MIR -9 199 41 1588 176 39 39 chr11 37043522 37043828 -113739725 + AluJb SINE Alu 5 310 -2 228 135 0 0 chr11 37044545 37044582 -113738971 + (A)n Simple_repeat Simple_repeat 1 37 0 2148 123 0 22 chr11 37044584 37044901 -113738652 + AluSx SINE Alu 1 310 -2 324 287 21 0 chr11 37046467 37046616 -113736937 + (TATG)n Simple_repeat Simple_repeat 1 152 0 188 227 0 0 chr11 37046621 37046665 -113736888 - MER5B DNA MER1_type -131 47 4 484 283 161 5 chr11 37047125 37047330 -113736223 - MIR SINE MIR -19 243 7 2331 108 0 9 chr11 37048136 37048451 -113735102 + AluSx SINE Alu 1 312 0 240 268 73 32 chr11 37048919 37049139 -113734414 + L1ME4a LINE L1 5893 6121 0 199 271 290 0 chr11 37049671 37049778 -113733775 + MER5B DNA MER1_type 17 154 -24 947 146 50 9 chr11 37050298 37050518 -113733035 - MER45R DNA AcHobo -106 1475 1247 1675 150 13 22 chr11 37050551 37050865 -113732688 - L1MC1 LINE L1 -23 6310 6000 1339 227 99 42 chr11 37051004 37051215 -113732338 + MER114 LTR ERV 1 199 -449 1548 109 34 44 chr11 37051215 37051508 -113732045 - L1MA1 LINE L1 0 6302 6013 1339 227 99 42 chr11 37051508 37051782 -113731771 + MER114 LTR ERV 199 531 -117 1907 127 0 0 chr11 37051782 37052042 -113731511 - AluSx SINE Alu -15 297 38 1339 227 99 42 chr11 37052042 37052168 -113731385 + MER114 LTR ERV 531 648 0 28278 108 11 15 chr11 37053564 37058079 -113725474 + L1PA7 LINE L1 3 4503 -1643 6735 75 1 1 chr11 37058472 37060129 -113723424 + L1PA7 LINE L1 4512 6154 0 476 91 0 0 chr11 37060257 37060323 -113723230 - AluSp/q SINE Alu -72 241 176 29 0 0 0 chr11 37061796 37061825 -113721728 + AT_rich Low_complexity Low_complexity 1 29 0 499 174 0 11 chr11 37061985 37062077 -113721476 - MLT1B LTR MaLR 0 390 300 1680 158 17 30 chr11 37062722 37063019 -113720534 - AluJo SINE Alu -19 293 1 2004 122 0 4 chr11 37063546 37063824 -113719729 + AluSx SINE Alu 1 277 -35 911 242 109 61 chr11 37063960 37064353 -113719200 - MLT1H LTR MaLR -128 421 10 259 268 159 26 chr11 37064668 37064793 -113718760 - MIR SINE MIR -65 143 16 346 330 173 17 chr11 37065388 37065567 -113717986 - MIR SINE MIR -6 256 50 2927 82 3 0 chr11 37066635 37066989 -113716564 - THE1A LTR MaLR 0 355 1 12241 98 8 1 chr11 37066989 37068559 -113714994 - THE1A-int LTR MaLR 0 1580 1 2941 79 6 0 chr11 37068559 37068912 -113714641 - THE1A LTR MaLR 0 355 1 240 35 0 0 chr11 37069486 37069515 -113714038 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 2226 237 51 5 chr11 37069865 37070624 -113712929 - L1ME3A LINE L1 -1 6169 5290 785 199 7 22 chr11 37070647 37070783 -113712770 - AluJo SINE Alu -176 136 3 1350 265 70 56 chr11 37070785 37071402 -113712151 - L1ME3A LINE L1 -863 5283 4661 1983 144 0 29 chr11 37071435 37071741 -113711812 - AluSq SINE Alu -15 298 2 394 255 19 0 chr11 37072015 37072121 -113711432 - MIR SINE MIR 0 262 155 503 254 92 23 chr11 37072214 37072387 -113711166 - MIR3 SINE MIR -4 204 20 263 310 74 25 chr11 37072431 37072673 -113710880 + L2 LINE L2 1739 1992 -1322 331 0 0 0 chr11 37072673 37072713 -113710840 - L1PA6 LINE L1 -3 6151 6112 1465 154 40 4 chr11 37072713 37072960 -113710593 - THE1B LTR MaLR -105 259 4 248 306 83 0 chr11 37072963 37073035 -113710518 + L2 LINE L2 2242 2319 -995 346 194 39 78 chr11 37073585 37073714 -113709839 + L2 LINE L2 2315 2438 -876 1932 153 3 0 chr11 37073832 37074119 -113709434 - AluJb SINE Alu -12 300 13 793 254 72 29 chr11 37074180 37074487 -113709066 + L2 LINE L2 2994 3313 0 3195 185 69 37 chr11 37074689 37075417 -113708136 - L1MD1 LINE L1 0 6242 5492 2330 127 68 11 chr11 37075799 37076154 -113707399 - THE1C LTR MaLR 0 375 1 858 260 77 4 chr11 37076544 37076779 -113706774 - MIR SINE MIR -5 257 6 1113 120 19 0 chr11 37076814 37076972 -113706581 - MER1A DNA MER1_type 0 533 373 9049 27 16 0 chr11 37076972 37078034 -113705519 - L1P LINE L1 -1768 4378 3300 2208 141 0 0 chr11 37078034 37078347 -113705206 - MER1A DNA MER1_type -132 397 85 329 304 78 59 chr11 37078614 37078818 -113704735 - MIR SINE MIR -6 256 49 322 385 57 20 chr11 37078945 37079246 -113704307 + L2 LINE L2 2365 2676 -638 258 259 17 0 chr11 37079520 37079578 -113703975 + MIR SINE MIR 204 262 0 377 258 158 0 chr11 37080220 37080340 -113703213 + L1ME LINE L1 5680 5818 -303 203 329 92 0 chr11 37080605 37080681 -113702872 - MIR3 SINE MIR -52 156 74 581 272 145 4 chr11 37081506 37081734 -113701819 + MIR SINE MIR 2 261 -1 245 319 196 28 chr11 37082215 37082500 -113701053 + L2 LINE L2 316 648 -2666 913 311 217 30 chr11 37082555 37083480 -113700073 + L2 LINE L2 1160 2257 -1057 375 328 56 17 chr11 37083543 37083723 -113699830 - MIR SINE MIR -27 235 49 291 393 14 7 chr11 37083775 37083920 -113699633 + L2 LINE L2 2433 2578 -736 797 180 168 0 chr11 37083926 37084087 -113699466 - MER20 DNA MER1_type 0 219 32 398 357 92 35 chr11 37084098 37084381 -113699172 + L2 LINE L2 2574 2872 -442 288 0 0 0 chr11 37084502 37084534 -113699019 + (CA)n Simple_repeat Simple_repeat 1 32 0 532 281 123 60 chr11 37084567 37084869 -113698684 + L2 LINE L2 2984 3304 -9 537 252 42 0 chr11 37085456 37085575 -113697978 - MIR3 SINE MIR -23 185 62 205 205 0 0 chr11 37085603 37085642 -113697911 + A-rich Low_complexity Low_complexity 1 39 0 381 231 9 28 chr11 37087000 37087108 -113696445 + LTR67 LTR ERVL 428 533 -24 1697 114 47 0 chr11 37089003 37089257 -113694296 + L1MA1 LINE L1 6037 6302 0 329 244 44 0 chr11 37090525 37090615 -113692938 + Charlie7 DNA MER1_type 8 101 -2511 209 154 26 64 chr11 37090638 37090716 -113692837 + (TATATG)n Simple_repeat Simple_repeat 2 76 0 267 278 32 40 chr11 37091983 37092109 -113691444 + LTR16B LTR ERVL 327 451 -13 233 98 24 0 chr11 37092420 37092461 -113691092 + (CA)n Simple_repeat Simple_repeat 1 42 0 213 260 41 27 chr11 37092931 37093004 -113690549 - MIR SINE MIR -125 137 64 693 181 12 118 chr11 37093078 37093356 -113690197 + MER57A LTR ERV1 64 261 -142 295 163 0 0 chr11 37093403 37093452 -113690101 + LTR54 LTR ERV1 427 475 -35 337 307 18 85 chr11 37093567 37093850 -113689703 - MLT1I LTR MaLR -2 407 144 22 0 0 0 chr11 37094125 37094147 -113689406 + AT_rich Low_complexity Low_complexity 1 22 0 601 278 26 0 chr11 37094949 37095100 -113688453 + MIR SINE MIR 12 166 -96 1301 195 26 7 chr11 37095182 37095454 -113688099 + AluJo SINE Alu 11 287 -25 1316 158 32 0 chr11 37095708 37095929 -113687624 - MLT1A1 LTR MaLR 0 365 138 566 273 23 0 chr11 37096029 37096161 -113687392 + MIR SINE MIR 32 166 -96 1619 174 11 7 chr11 37096237 37096519 -113687034 + AluJo SINE Alu 5 287 -25 1894 124 23 101 chr11 37096773 37097161 -113686392 - MLT1A1 LTR MaLR 0 365 8 1811 127 0 0 chr11 37097381 37097633 -113685920 + AluSg SINE Alu 59 310 0 317 326 15 38 chr11 37097973 37098105 -113685448 + MIR SINE MIR 17 145 -63 250 260 0 0 chr11 37098139 37098189 -113685364 + MIR SINE MIR 213 262 0 554 264 75 33 chr11 37098699 37098911 -113684642 + MIR SINE MIR 33 253 -9 523 290 0 14 chr11 37099187 37099325 -113684228 - MIR3 SINE MIR -48 160 25 2221 106 3 3 chr11 37100343 37100646 -113682907 - AluSx SINE Alu -9 303 1 821 164 0 23 chr11 37101385 37101513 -113682040 + FLAM_C SINE Alu 2 126 -17 642 248 29 78 chr11 37101640 37101846 -113681707 - MER117 DNA MER1_type 0 197 2 196 331 141 0 chr11 37102404 37102525 -113681028 + L2 LINE L2 2920 3057 -215 1242 59 13 0 chr11 37103044 37103197 -113680356 + L1PA7 LINE L1 6000 6154 0 593 273 0 66 chr11 37103206 37103404 -113680149 + MIR SINE MIR 46 230 -32 889 250 259 6 chr11 37104811 37105147 -113678406 + L2 LINE L2 2893 3313 0 312 167 0 0 chr11 37105398 37105470 -113678083 + (TG)n Simple_repeat Simple_repeat 1 72 0 3584 120 12 6 chr11 37105564 37106073 -113677480 - MER41E LTR ERV1 0 512 1 1011 155 0 23 chr11 37106443 37106617 -113676936 - AluJb SINE Alu -6 306 137 200 57 0 29 chr11 37106708 37106743 -113676810 + (CAA)n Simple_repeat Simple_repeat 2 35 0 680 248 122 62 chr11 37107191 37107675 -113675878 - L1MC4a LINE L1 -1859 5949 5437 29 0 0 0 chr11 37107754 37107783 -113675770 + AT_rich Low_complexity Low_complexity 1 29 0 310 323 0 39 chr11 37108637 37108764 -113674789 - MIR SINE MIR -116 146 25 201 121 0 0 chr11 37109556 37109589 -113673964 + (TCCA)n Simple_repeat Simple_repeat 1 33 0 269 185 93 0 chr11 37110349 37110403 -113673150 + MIR SINE MIR 43 101 -107 1006 293 109 18 chr11 37110439 37110825 -113672728 - MLT1K LTR MaLR -10 578 158 1114 184 104 0 chr11 37110975 37111176 -113672377 - MER58A DNA MER1_type -2 222 1 209 271 0 0 chr11 37111229 37111277 -113672276 + MIR SINE MIR 215 262 0 213 240 0 0 chr11 37111297 37111347 -113672206 + (TAA)n Simple_repeat Simple_repeat 3 52 0 350 300 43 7 chr11 37111444 37111584 -113671969 - MIR3 SINE MIR -23 185 41 439 145 0 14 chr11 37112371 37112440 -113671113 - MER58 DNA MER1_type 0 2420 2353 279 219 178 32 chr11 37112582 37112678 -113670875 + MIR SINE MIR 63 164 -62 3061 78 8 0 chr11 37112921 37113307 -113670246 - L1PA10 LINE L1 -4 6164 5776 39 22 0 0 chr11 37113374 37113420 -113670133 + AT_rich Low_complexity Low_complexity 1 46 0 880 127 16 0 chr11 37113441 37113567 -113669986 - AluJb SINE Alu -175 137 10 257 212 204 9 chr11 37114238 37114351 -113669202 + MIR SINE MIR 34 168 -94 540 0 0 0 chr11 37114382 37114442 -113669111 + (CAAAA)n Simple_repeat Simple_repeat 1 60 0 488 274 16 89 chr11 37114987 37115177 -113668376 - Charlie8 DNA MER1_type -2057 360 185 1962 135 3 57 chr11 37115286 37115604 -113667949 + AluSx SINE Alu 9 309 -3 2096 128 0 13 chr11 37115817 37116122 -113667431 - AluSx SINE Alu -7 305 5 198 274 0 0 chr11 37116705 37116756 -113666797 - L2 LINE L2 -4 3268 3218 2085 207 30 45 chr11 37118277 37118785 -113664768 - MLT1D LTR MaLR -4 501 2 601 287 37 28 chr11 37119158 37119374 -113664179 + MIR SINE MIR 8 225 -37 460 306 18 18 chr11 37119384 37119554 -113663999 + L3 LINE CR1 1293 1462 -115 256 367 8 8 chr11 37119566 37119686 -113663867 + MER5A DNA MER1_type 18 137 -52 3808 118 68 5 chr11 37119719 37120337 -113663216 - L1MC1 LINE L1 -15 6318 5662 667 310 9 0 chr11 37120674 37120887 -113662666 + MIR SINE MIR 42 256 -6 257 306 12 0 chr11 37121421 37121506 -113662047 + MIR SINE MIR 65 150 -112 333 314 8 0 chr11 37121992 37122110 -113661443 - L1ME3A LINE L1 0 6170 6052 2369 108 0 3 chr11 37123271 37123576 -113659977 - AluSq SINE Alu -9 304 1 426 323 80 51 chr11 37123749 37124062 -113659491 - L2 LINE L2 0 3272 2951 226 299 126 0 chr11 37125701 37125788 -113657765 - MIR3 SINE MIR 0 208 111 232 259 0 0 chr11 37125933 37125991 -113657562 - MIR SINE MIR -121 87 30 543 328 74 14 chr11 37127835 37127951 -113655602 + L2 LINE L2 2997 3105 -208 2746 88 11 16 chr11 37127951 37128328 -113655225 + THE1C LTR MaLR 1 375 0 543 328 74 14 chr11 37128328 37128507 -113655046 + L2 LINE L2 3105 3310 -3 183 363 88 0 chr11 37128625 37128716 -113654837 - L2 LINE L2 -40 3232 3134 200 265 0 0 chr11 37128956 37129005 -113654548 + MIR SINE MIR 210 258 -4 212 179 0 0 chr11 37129125 37129164 -113654389 + (TTATA)n Simple_repeat Simple_repeat 1 39 0 255 286 13 13 chr11 37130568 37130645 -113652908 - MIR SINE MIR -175 87 11 22 0 0 0 chr11 37131177 37131199 -113652354 + AT_rich Low_complexity Low_complexity 1 22 0 199 244 154 26 chr11 37131368 37131446 -113652107 + MIR SINE MIR 20 107 -155 261 298 48 0 chr11 37132166 37132250 -113651303 - MER5A DNA MER1_type -99 90 3 2274 122 0 3 chr11 37133433 37133745 -113649808 - AluSq SINE Alu -2 311 1 230 81 27 0 chr11 37134449 37134486 -113649067 + (GAAAA)n Simple_repeat Simple_repeat 3 40 0 2301 105 0 0 chr11 37134530 37134824 -113648729 - AluSg SINE Alu -16 294 1 1300 197 157 10 chr11 37136381 37136681 -113646872 - MER2 DNA MER2_type 0 345 2 417 39 0 0 chr11 37137334 37137385 -113646168 + (TC)n Simple_repeat Simple_repeat 1 51 0 211 292 125 17 chr11 37137494 37137614 -113645939 + MER5B DNA MER1_type 1 133 -45 2209 118 20 0 chr11 37137797 37138103 -113645450 + AluSx SINE Alu 1 312 0 244 268 32 76 chr11 37138214 37138371 -113645182 - L1MC/D LINE L1 -2132 5676 5527 1048 220 79 26 chr11 37140488 37140834 -113642719 + MSTD LTR MaLR 1 396 0 229 340 77 0 chr11 37141553 37141709 -113641844 + MIR3 SINE MIR 34 201 -7 1688 163 179 8 chr11 37142387 37142779 -113640774 + L1MA4A LINE L1 5822 6280 -23 550 273 59 11 chr11 37143761 37143948 -113639605 + MIR SINE MIR 28 223 -39 726 168 37 47 chr11 37144328 37144519 -113639034 - MER53 DNA DNA 0 189 1 23 0 0 0 chr11 37146897 37146920 -113636633 + AT_rich Low_complexity Low_complexity 1 23 0 380 286 11 0 chr11 37147908 37147999 -113635554 + MER58 DNA MER1_type 1 92 -249 861 174 64 6 chr11 37148005 37148177 -113635376 - MLT1A1 LTR MaLR 0 365 184 23 33 0 0 chr11 37148186 37148216 -113635337 + AT_rich Low_complexity Low_complexity 1 30 0 1900 145 0 30 chr11 37148225 37148522 -113635031 - AluJb SINE Alu -23 289 2 1654 213 30 11 chr11 37148565 37148919 -113634634 - MLT1A1 LTR MaLR -1 364 3 490 65 0 0 chr11 37148919 37148980 -113634573 + MADE1 DNA Mariner 20 80 0 240 35 0 0 chr11 37149856 37149885 -113633668 + (TA)n Simple_repeat Simple_repeat 2 30 0 189 0 0 0 chr11 37149902 37149923 -113633630 + (GA)n Simple_repeat Simple_repeat 2 22 0 2084 102 4 4 chr11 37149929 37150195 -113633358 - AluSg SINE Alu -40 270 5 30 27 0 0 chr11 37150898 37150935 -113632618 + AT_rich Low_complexity Low_complexity 1 37 0 437 301 45 17 chr11 37151025 37151201 -113632352 - MIR SINE MIR -3 259 79 381 271 53 0 chr11 37151243 37151376 -113632177 + MIR SINE MIR 48 187 -75 271 222 16 0 chr11 37151381 37151444 -113632109 - MIR SINE MIR -5 257 194 2359 156 73 26 chr11 37151740 37152203 -113631350 - MER31A LTR ERV1 0 485 1 376 238 90 25 chr11 37152220 37152342 -113631211 - L2 LINE L2 -5 3267 3138 202 351 36 24 chr11 37152576 37152741 -113630812 - L2 LINE L2 -407 2907 2741 198 296 51 41 chr11 37153193 37153208 -113630345 + MER5A DNA MER1_type 4 19 -170 322 274 84 17 chr11 37153208 37153354 -113630199 - MER5A DNA MER1_type -3 186 14 1448 181 21 42 chr11 37153907 37154195 -113629358 + AluJo SINE Alu 5 286 -16 188 33 0 33 chr11 37154199 37154229 -113629324 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 188 261 0 0 chr11 37155310 37155356 -113628197 + MIR SINE MIR 104 149 -113 356 362 18 0 chr11 37155975 37156138 -113627415 + MIR SINE MIR 71 236 -26 237 33 0 0 chr11 37156248 37156278 -113627275 + (TC)n Simple_repeat Simple_repeat 1 30 0 2202 139 0 0 chr11 37157695 37158004 -113625549 + AluSx SINE Alu 1 309 -3 500 306 100 30 chr11 37158795 37159240 -113624313 - L1ME4a LINE L1 -213 5908 5435 268 290 24 48 chr11 37162734 37162858 -113620695 - MIR SINE MIR -71 191 71 203 265 20 0 chr11 37163364 37163413 -113620140 + MIR SINE MIR 100 149 -59 331 303 77 19 chr11 37163912 37164067 -113619486 - MIR SINE MIR -85 177 14 225 0 0 0 chr11 37164688 37164713 -113618840 + (CA)n Simple_repeat Simple_repeat 2 26 0 214 305 0 63 chr11 37164747 37164842 -113618711 - MIR3 SINE MIR -9 199 111 674 296 30 5 chr11 37164906 37165105 -113618448 - MIR SINE MIR -57 205 2 216 0 0 0 chr11 37165145 37165169 -113618384 + (TA)n Simple_repeat Simple_repeat 1 24 0 238 158 0 0 chr11 37165213 37165251 -113618302 + MIR SINE MIR 117 154 -108 276 276 87 51 chr11 37166072 37166239 -113617314 + MIR SINE MIR 34 202 -6 761 254 51 10 chr11 37166757 37166954 -113616599 - MIR SINE MIR -26 236 32 1093 244 57 51 chr11 37168634 37168794 -113614759 + L1ME1 LINE L1 5807 5965 -201 2131 134 0 3 chr11 37168794 37169099 -113614454 + AluSx SINE Alu 1 304 -8 1093 244 57 51 chr11 37169099 37169291 -113614262 + L1ME1 LINE L1 5965 6161 -5 455 239 228 17 chr11 37169407 37169587 -113613966 - MIR SINE MIR -18 244 27 266 284 31 63 chr11 37169613 37169740 -113613813 - L2 LINE L2 -226 3046 2924 2207 118 0 0 chr11 37170224 37170520 -113613033 - AluSx SINE Alu -16 296 1 2214 87 0 11 chr11 37170707 37170993 -113612560 + AluSp SINE Alu 30 312 -1 21 0 0 0 chr11 37171682 37171703 -113611850 + AT_rich Low_complexity Low_complexity 1 21 0 235 252 201 44 chr11 37171785 37171944 -113611609 - MIR SINE MIR -30 232 49 1238 200 121 50 chr11 37172057 37172397 -113611156 + MLT1A1 LTR MaLR 2 365 0 22 0 0 0 chr11 37172788 37172810 -113610743 + AT_rich Low_complexity Low_complexity 1 22 0 400 256 116 0 chr11 37172940 37173069 -113610484 + MIR3 SINE MIR 3 146 -62 420 221 10 19 chr11 37174129 37174263 -113609290 - MER5A DNA MER1_type -6 183 1 683 305 52 0 chr11 37174393 37174603 -113608950 - MIR SINE MIR -3 259 39 231 114 0 0 chr11 37174660 37174695 -113608858 + (CA)n Simple_repeat Simple_repeat 2 36 0 225 313 0 0 chr11 37175510 37175577 -113607976 - L2 LINE L2 -72 3241 3175 249 305 195 17 chr11 37175755 37175929 -113607624 - MIR SINE MIR -50 212 8 460 163 0 0 chr11 37176111 37176191 -113607362 + MER116 DNA Mariner 1 80 0 890 343 163 18 chr11 37176980 37177405 -113606148 + L2 LINE L2 1492 1854 -1460 1781 130 0 4 chr11 37177405 37177659 -113605894 - AluSg SINE Alu -21 289 37 890 343 163 18 chr11 37177659 37178424 -113605129 + L2 LINE L2 1854 2855 -459 222 284 40 27 chr11 37178710 37178784 -113604769 + L2 LINE L2 3239 3313 0 21 57 0 0 chr11 37179100 37179135 -113604418 + AT_rich Low_complexity Low_complexity 1 35 0 2008 130 11 0 chr11 37179145 37179429 -113604124 - AluSx SINE Alu -25 287 1 308 246 70 16 chr11 37179889 37179914 -113603639 - MIR SINE MIR -75 133 111 2278 151 14 27 chr11 37179914 37180284 -113603269 - MLT1A1 LTR MaLR 0 365 1 308 246 70 16 chr11 37180284 37180367 -113603186 - MIR SINE MIR -97 111 17 452 281 49 58 chr11 37180381 37180564 -113602989 + MIR SINE MIR 28 210 -52 1865 144 47 0 chr11 37180564 37180862 -113602691 - AluSx SINE Alu 0 312 1 452 281 49 58 chr11 37180862 37180902 -113602651 + MIR SINE MIR 210 249 -13 219 231 0 0 chr11 37180905 37180944 -113602609 + (CACCAT)n Simple_repeat Simple_repeat 2 40 0 3364 102 15 11 chr11 37181070 37181533 -113602020 - MER4C LTR ERV1 0 465 1 25 0 0 0 chr11 37181770 37181795 -113601758 + AT_rich Low_complexity Low_complexity 1 25 0 684 248 74 45 chr11 37181803 37182045 -113601508 - MIR SINE MIR -3 259 11 753 300 25 12 chr11 37183219 37183462 -113600091 - MIR SINE MIR -15 247 2 1958 83 20 0 chr11 37184057 37184311 -113599242 + AluY SINE Alu 44 302 -9 241 309 15 0 chr11 37185412 37185480 -113598073 - L2 LINE L2 -6 3307 3239 2296 96 0 7 chr11 37185771 37186073 -113597480 - AluSp SINE Alu -13 300 1 440 191 61 35 chr11 37186140 37186255 -113597298 + L2 LINE L2 3192 3309 -4 216 307 13 0 chr11 37189684 37189759 -113593794 + MIR SINE MIR 174 249 -13 2179 105 3 16 chr11 37190291 37190597 -113592956 - AluY SINE Alu -9 302 1 458 291 81 12 chr11 37193035 37193207 -113590346 + MIR3 SINE MIR 2 185 -23 1148 233 84 23 chr11 37198263 37198607 -113584946 - MLT1I LTR MaLR -42 367 3 226 335 50 55 chr11 37199435 37199617 -113583936 + MIR3 SINE MIR 11 191 -17 488 274 52 41 chr11 37199971 37200241 -113583312 - L1ME3A LINE L1 -221 5949 5677 1339 215 68 24 chr11 37201150 37201489 -113582064 - MLT1A1 LTR MaLR -11 354 1 414 277 136 16 chr11 37202603 37202787 -113580766 + MIR SINE MIR 52 257 -5 183 186 0 0 chr11 37202788 37202831 -113580722 + (CAT)n Simple_repeat Simple_repeat 1 43 0 27 73 0 0 chr11 37203611 37203666 -113579887 + AT_rich Low_complexity Low_complexity 1 55 0 763 268 74 16 chr11 37203666 37204050 -113579503 - LTR16A1 LTR ERVL 0 457 3 417 235 0 0 chr11 37204101 37204182 -113579371 - MIR SINE MIR -74 188 108 299 314 25 0 chr11 37204627 37204748 -113578805 + MER117 DNA MER1_type 74 197 0 671 243 79 126 chr11 37204751 37205179 -113578374 - MLT1I LTR MaLR -1 408 1 1474 170 55 19 chr11 37205570 37205861 -113577692 - AluSx SINE Alu 0 301 1 525 318 31 10 chr11 37206511 37206703 -113576850 + MLT1I LTR MaLR 185 380 -29 286 296 229 22 chr11 37207261 37207440 -113576113 - MIR SINE MIR -9 253 38 226 348 56 44 chr11 37207658 37207977 -113575576 - HAL1 LINE L1 -2184 323 1 204 283 40 61 chr11 37208332 37208431 -113575122 - L2 LINE L2 -3 3269 3173 1857 151 10 0 chr11 37208557 37208849 -113574704 - AluSx SINE Alu -13 299 5 282 214 0 18 chr11 37208962 37209018 -113574535 + Tigger5 DNA MER2_type 1 55 -2268 318 192 192 0 chr11 37209028 37209101 -113574452 + Tigger5 DNA MER2_type 2237 2323 0 437 266 114 13 chr11 37210141 37210299 -113573254 + MIR SINE MIR 2 175 -87 366 238 183 0 chr11 37210336 37210462 -113573091 - MIR SINE MIR -32 230 82 266 254 0 16 chr11 37210445 37210508 -113573045 + MIR SINE MIR 184 245 -17 * 244 190 0 127 chr11 37210592 37210671 -113572882 + L2 LINE L2 3204 3272 0 604 282 47 0 chr11 37212116 37212286 -113571267 - MIR SINE MIR -53 209 32 214 309 73 9 chr11 37212865 37212975 -113570578 + MIR SINE MIR 17 133 -129 367 279 177 14 chr11 37213446 37213661 -113569892 - MIR SINE MIR -6 256 7 1497 247 116 49 chr11 37213846 37214357 -113569196 + MLT1H LTR MaLR 5 549 0 4421 254 65 40 chr11 37214443 37215751 -113567802 - HAL1 LINE L1 -648 1859 493 1726 178 16 10 chr11 37215751 37216060 -113567493 - AluJb SINE Alu -1 311 1 4421 254 65 40 chr11 37216060 37216566 -113566987 - HAL1 LINE L1 -2014 493 1 202 274 0 0 chr11 37218167 37218218 -113565335 + GA-rich Low_complexity Low_complexity 2 52 0 189 94 0 0 chr11 37219022 37219054 -113564499 + (A)n Simple_repeat Simple_repeat 1 32 0 785 170 15 85 chr11 37220321 37220521 -113563032 + MER5A DNA MER1_type 1 186 -3 432 253 45 52 chr11 37220530 37220684 -113562869 - MIR SINE MIR -90 172 20 634 255 25 30 chr11 37221244 37221455 -113562098 - MIR SINE MIR -48 214 1 1984 153 0 0 chr11 37221771 37222065 -113561488 + AluJb SINE Alu 1 294 -18 2159 117 9 25 chr11 37222067 37222384 -113561169 + AluSx SINE Alu 1 312 0 469 228 16 24 chr11 37222397 37222524 -113561029 + MIR SINE MIR 50 175 -87 214 231 0 0 chr11 37222654 37222693 -113560860 + MIR SINE MIR 206 244 -18 343 305 84 38 chr11 37223270 37223401 -113560152 - MIR3 SINE MIR -31 177 41 243 0 0 0 chr11 37223403 37223430 -113560123 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2037 131 10 0 chr11 37223432 37223722 -113559831 - AluSx SINE Alu -19 293 1 1196 149 40 0 chr11 37224036 37224237 -113559316 - MER3 DNA MER1_type 0 209 1 1714 119 36 25 chr11 37224493 37224803 -113558750 - AluJb SINE Alu 0 313 1 205 233 0 0 chr11 37225147 37225190 -113558363 + MIR SINE MIR 212 254 -8 229 371 32 24 chr11 37225218 37225342 -113558211 + L2 LINE L2 3147 3271 -1 253 68 45 0 chr11 37226622 37226666 -113556887 + (TA)n Simple_repeat Simple_repeat 1 46 0 462 235 176 7 chr11 37227305 37227458 -113556095 - MER5A DNA MER1_type -7 182 4 2295 95 20 0 chr11 37228198 37228493 -113555060 + AluSg SINE Alu 1 301 -9 383 332 56 31 chr11 37230176 37230372 -113553181 + MIR SINE MIR 2 202 -60 448 243 200 7 chr11 37230427 37230567 -113552986 + MER5A DNA MER1_type 9 175 -14 2107 119 0 0 chr11 37230644 37230921 -113552632 + AluSc SINE Alu 15 291 -18 855 123 0 23 chr11 37231170 37231300 -113552253 + FLAM_C SINE Alu 2 128 -5 24 32 0 0 chr11 37231300 37231331 -113552222 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr11 37231961 37231989 -113551564 + AT_rich Low_complexity Low_complexity 1 28 0 533 242 158 42 chr11 37232335 37232500 -113551053 - MER5A DNA MER1_type -5 184 1 352 227 36 78 chr11 37232584 37232704 -113550849 - MIR SINE MIR -27 181 70 643 258 0 25 chr11 37233156 37233319 -113550234 + MIR SINE MIR 41 199 -63 254 161 0 149 chr11 37233323 37233354 -113550199 + MER116 DNA Mariner 7 41 -39 2243 90 33 7 chr11 37233354 37233655 -113549898 - AluSg SINE Alu -1 309 1 254 161 0 149 chr11 37233655 37233710 -113549843 + MER116 DNA Mariner 41 80 0 275 254 0 30 chr11 37233710 37233777 -113549776 + MIR SINE MIR 197 261 -1 * 542 268 91 27 chr11 37233776 37233996 -113549557 - MIR SINE MIR -27 235 2 1013 196 11 16 chr11 37234063 37234252 -113549301 + MER5A DNA MER1_type 1 188 -1 452 86 14 0 chr11 37235498 37235568 -113547985 + (CACCAT)n Simple_repeat Simple_repeat 5 75 0 1709 134 0 4 chr11 37235594 37235840 -113547713 - AluSx SINE Alu -19 293 49 2306 93 10 0 chr11 37236133 37236424 -113547129 + AluSx SINE Alu 1 294 -18 965 68 0 0 chr11 37236736 37236854 -113546699 + AluSp/q SINE Alu 177 294 -19 325 219 14 0 chr11 37237417 37237490 -113546063 + MER116 DNA Mariner 5 78 -2 320 77 19 0 chr11 37237544 37237596 -113545957 + (CA)n Simple_repeat Simple_repeat 2 54 0 1542 155 3 23 chr11 37238601 37238905 -113544648 + L1P LINE L1 2758 3055 -3091 24 32 0 0 chr11 37238905 37238936 -113544617 + AT_rich Low_complexity Low_complexity 1 31 0 278 379 26 0 chr11 37244889 37245005 -113538548 - MIR3 SINE MIR -27 181 63 249 57 0 0 chr11 37249287 37249322 -113534231 + (A)n Simple_repeat Simple_repeat 1 35 0 2073 69 66 31 chr11 37250272 37250560 -113532993 - AluY SINE Alu -13 298 1 297 318 45 0 chr11 37250597 37250685 -113532868 + L2 LINE L2 3133 3224 -48 316 336 71 0 chr11 37252690 37252830 -113530723 - MIR3 SINE MIR -11 197 48 * 713 305 111 29 chr11 37252807 37253148 -113530405 + L3 LINE CR1 1207 1575 -2 1427 116 65 0 chr11 37255890 37256106 -113527447 - MER30 DNA MER1_type 0 230 1 201 74 0 0 chr11 37256446 37256473 -113527080 + (A)n Simple_repeat Simple_repeat 1 27 0 337 234 187 9 chr11 37257205 37257312 -113526241 + L2 LINE L2 3188 3313 0 220 297 40 14 chr11 37257355 37257429 -113526124 + L2 LINE L2 3191 3266 -6 935 62 78 0 chr11 37258625 37258754 -113524799 - MER85 DNA T2_type 0 139 1 308 219 187 61 chr11 37259610 37259791 -113523762 + MIR SINE MIR 37 249 -13 2105 135 0 0 chr11 37260305 37260601 -113522952 - AluSx SINE Alu -16 296 1 194 300 178 22 chr11 37260845 37260935 -113522618 - MIR SINE MIR -65 143 40 843 117 0 0 chr11 37261252 37261363 -113522190 + FLAM_C SINE Alu 1 111 -32 981 226 120 32 chr11 37261420 37261854 -113521699 - MER113 DNA MER1_type? -45 476 5 2256 125 0 3 chr11 37261963 37262266 -113521287 - AluSx SINE Alu -10 302 1 323 222 156 0 chr11 37262664 37262754 -113520799 - L2 LINE L2 0 3272 3169 248 28 56 0 chr11 37263634 37263670 -113519883 + (TGGA)n Simple_repeat Simple_repeat 3 40 0 308 244 73 155 chr11 37264007 37264323 -113519230 + L2 LINE L2 3023 3312 -1 274 325 32 57 chr11 37265915 37266038 -113517515 + L2 LINE L2 3137 3256 -16 248 171 24 37 chr11 37267141 37267223 -113516330 + (TATATG)n Simple_repeat Simple_repeat 1 81 0 647 64 64 17 chr11 37267223 37267395 -113516158 + (TA)n Simple_repeat Simple_repeat 1 180 0 23 0 0 0 chr11 37267395 37267418 -113516135 + AT_rich Low_complexity Low_complexity 1 23 0 685 148 0 11 chr11 37267418 37267600 -113515953 + (TA)n Simple_repeat Simple_repeat 1 180 0 249 285 223 8 chr11 37268144 37268274 -113515279 + L2 LINE L2 2712 2869 -445 374 223 53 87 chr11 37268295 37268410 -113515143 + L2 LINE L2 3039 3145 -168 1471 139 13 13 chr11 37268410 37268640 -113514913 - MER30 DNA MER1_type 0 230 1 374 223 53 87 chr11 37268640 37268730 -113514823 + L2 LINE L2 3145 3237 -76 224 241 207 26 chr11 37270787 37270903 -113512650 + MIR SINE MIR 56 192 -70 1086 197 10 10 chr11 37271284 37271492 -113512061 + MER3 DNA MER1_type 1 208 -1 2372 102 3 13 chr11 37272779 37272915 -113510638 + AluSx SINE Alu 1 137 -175 2716 45 0 0 chr11 37272915 37273225 -113510328 + AluY SINE Alu 1 310 -1 2372 102 3 13 chr11 37273225 37273403 -113510150 + AluSx SINE Alu 137 312 0 255 298 12 12 chr11 37273709 37273793 -113509760 + (CATA)n Simple_repeat Simple_repeat 2 85 0 243 280 42 59 chr11 37273793 37273911 -113509642 - L1ME4a LINE L1 -158 5963 5848 665 339 117 19 chr11 37273922 37274460 -113509093 + L2 LINE L2 2722 3313 0 181 186 68 17 chr11 37274718 37274777 -113508776 - MIR SINE MIR -103 159 98 245 220 161 51 chr11 37275001 37275119 -113508434 - MIR SINE MIR -60 148 18 348 291 8 8 chr11 37275258 37275375 -113508178 - MIR SINE MIR -140 122 6 8653 111 6 27 chr11 37276332 37277660 -113505893 + HSMAR2 DNA Mariner 2 1301 -1 683 202 0 66 chr11 37278151 37278334 -113505219 - MIR SINE MIR -8 254 84 375 322 68 17 chr11 37279007 37279184 -113504369 + MIR SINE MIR 51 236 -26 667 231 45 0 chr11 37279212 37279368 -113504185 - MIR SINE MIR -49 213 51 294 73 0 0 chr11 37279802 37279843 -113503710 + (TG)n Simple_repeat Simple_repeat 2 42 0 338 259 102 9 chr11 37279979 37280087 -113503466 + L2 LINE L2 3155 3272 0 569 249 94 20 chr11 37280753 37280954 -113502599 - MIR SINE MIR -10 252 37 207 25 75 0 chr11 37281948 37281988 -113501565 + A-rich Low_complexity Low_complexity 2 44 0 197 329 12 47 chr11 37283437 37283522 -113500031 + MIR SINE MIR 33 114 -94 490 253 7 39 chr11 37285188 37285342 -113498211 - MIR SINE MIR -7 255 107 201 159 0 0 chr11 37286345 37286389 -113497164 + (TG)n Simple_repeat Simple_repeat 1 44 0 253 294 102 34 chr11 37287118 37287295 -113496258 - L2 LINE L2 -41 3272 3084 369 283 87 40 chr11 37287883 37288056 -113495497 + MIR SINE MIR 47 227 -35 224 57 0 29 chr11 37288317 37288352 -113495201 + (GA)n Simple_repeat Simple_repeat 1 34 0 356 366 11 11 chr11 37288496 37288671 -113494882 + MIR3 SINE MIR 10 184 -24 268 318 28 9 chr11 37289433 37289540 -113494013 + MIR SINE MIR 35 143 -65 562 318 21 0 chr11 37290690 37290879 -113492674 - MIR SINE MIR -16 246 54 680 126 72 11 chr11 37291692 37291958 -113491595 + (TAGA)n Simple_repeat Simple_repeat 1 282 0 341 287 37 9 chr11 37292087 37292195 -113491358 - L2 LINE L2 -23 3290 3180 1367 185 14 25 chr11 37292222 37292498 -113491055 - AluJo SINE Alu -30 282 10 909 249 123 47 chr11 37293988 37294410 -113489143 + MLT1L LTR MaLR 93 546 -69 453 249 65 27 chr11 37295527 37295712 -113487841 + L2 LINE L2 3117 3308 -5 377 271 152 13 chr11 37296073 37296224 -113487329 + MIR3 SINE MIR 19 190 -18 484 226 95 22 chr11 37297629 37297766 -113485787 - MER117 DNA MER1_type -45 152 6 207 263 81 50 chr11 37298249 37298348 -113485205 + L2 LINE L2 3155 3256 -57 183 306 0 12 chr11 37298381 37298466 -113485087 - MIR SINE MIR -113 149 66 181 204 56 0 chr11 37299254 37299308 -113484245 + MIR SINE MIR 79 135 -127 422 321 0 15 chr11 37299567 37299701 -113483852 - MIR3 SINE MIR -11 197 66 181 321 0 0 chr11 37300486 37300539 -113483014 - L2 LINE L2 -14 3299 3247 2476 64 0 7 chr11 37301152 37301449 -113482104 - AluSp SINE Alu -18 295 1 1066 258 16 0 chr11 37302529 37302781 -113480772 + MIR SINE MIR 7 262 0 180 0 0 0 chr11 37305037 37305057 -113478496 + (CCCCAG)n Simple_repeat Simple_repeat 1 20 0 265 357 78 0 chr11 37305730 37305859 -113477694 + MIR SINE MIR 57 195 -67 36397 75 8 10 chr11 37306227 37311848 -113471705 - L1PA6 LINE L1 -87 6067 459 937 148 6 40 chr11 37311850 37312026 -113471527 - MLT1A1 LTR MaLR -195 170 1 570 265 95 16 chr11 37312123 37312312 -113471241 - MIR SINE MIR -12 250 47 365 258 91 15 chr11 37313068 37313200 -113470353 - MER117 DNA MER1_type -45 152 11 1791 178 0 7 chr11 37313512 37313798 -113469755 - AluJo SINE Alu -28 284 1 892 250 177 23 chr11 37314233 37314533 -113469020 - MLT1H LTR MaLR -9 540 195 299 247 14 0 chr11 37315589 37315662 -113467891 - MER117 DNA MER1_type -119 78 5 2417 166 51 0 chr11 37315712 37316127 -113467426 + MLT1C LTR MaLR 1 436 -31 1162 29 50 0 chr11 37316127 37316266 -113467287 - AluY SINE Alu -15 296 151 252 128 26 0 chr11 37316267 37316306 -113467247 + MLT1C LTR MaLR 426 465 -2 217 314 12 12 chr11 37316435 37316521 -113467032 - MIR SINE MIR -65 143 58 194 309 18 0 chr11 37316633 37316688 -113466865 + L2 LINE L2 3207 3262 -10 239 163 20 20 chr11 37317703 37317752 -113465801 - MER45A DNA AcHobo 0 178 130 1221 248 132 62 chr11 37317775 37318335 -113465218 - MER45C DNA AcHobo -354 599 1 230 280 0 0 chr11 37319499 37319549 -113464004 + MIR SINE MIR 98 147 -61 2072 104 0 0 chr11 37320733 37321001 -113462552 - AluSx SINE Alu -5 307 40 532 281 82 92 chr11 37321130 37321297 -113462256 - L2 LINE L2 0 3313 3146 3993 28 2 0 chr11 37321297 37321755 -113461798 - L1PA5 LINE L1 -4 6150 5692 532 281 82 92 chr11 37321755 37322186 -113461367 - L2 LINE L2 -167 3146 2667 1730 151 0 58 chr11 37322255 37322567 -113460986 + AluJb SINE Alu 1 294 -18 440 230 152 11 chr11 37322586 37322764 -113460789 + MER113 DNA MER1_type? 314 516 -5 1804 179 57 7 chr11 37323891 37324236 -113459317 - MLT1A1 LTR MaLR 0 446 13 472 335 22 54 chr11 37324256 37324572 -113458981 - LTR16B LTR ERVL -150 314 9 888 162 39 0 chr11 37325432 37325611 -113457942 - MER53 DNA DNA -2 187 2 592 289 96 19 chr11 37326152 37326360 -113457193 - MER58A DNA MER1_type 0 224 1 2189 46 0 0 chr11 37326903 37327162 -113456391 + L1PA5 LINE L1 5889 6147 -7 189 0 0 0 chr11 37327162 37327183 -113456370 + (TA)n Simple_repeat Simple_repeat 2 22 0 23 33 0 0 chr11 37327664 37327694 -113455859 + AT_rich Low_complexity Low_complexity 1 30 0 655 208 13 7 chr11 37327986 37328004 -113455549 - L1MA10 LINE L1 -3 6331 6314 8149 222 45 57 chr11 37328004 37328755 -113454798 - L1ME1 LINE L1 -13 6547 5789 1939 159 35 40 chr11 37328755 37329132 -113454421 + THE1C LTR MaLR 1 375 0 8149 222 45 57 chr11 37329132 37329601 -113453952 - L1ME1 LINE L1 -771 5789 5316 291 28 0 0 chr11 37329601 37329637 -113453916 + (TTTTG)n Simple_repeat Simple_repeat 3 38 0 8149 222 45 57 chr11 37329637 37330243 -113453310 - L1ME1 LINE L1 -1244 5316 4705 1637 151 42 45 chr11 37330243 37330554 -113452999 - AluJb SINE Alu -2 310 1 8149 222 45 57 chr11 37330554 37331562 -113451991 - L1ME1 LINE L1 -1855 4705 3775 2301 101 0 3 chr11 37331562 37331860 -113451693 - AluY SINE Alu -14 297 1 8149 222 45 57 chr11 37331860 37332741 -113450812 - L1ME1 LINE L1 -2785 3775 2885 5975 207 50 46 chr11 37332718 37334169 -113449384 - L1ME1 LINE L1 -5083 1457 2 * 719 203 8 0 chr11 37334278 37334406 -113449147 - FLAM_C SINE Alu 0 133 5 4208 103 12 8 chr11 37334600 37335202 -113448351 + L1PA13 LINE L1 5551 6154 -9 30 69 0 0 chr11 37335202 37335260 -113448293 + AT_rich Low_complexity Low_complexity 1 58 0 292 274 36 0 chr11 37337400 37337484 -113446069 + L2 LINE L2 3184 3270 -2 1841 228 157 13 chr11 37339137 37339924 -113443629 + L2 LINE L2 2151 3074 -239 1494 252 44 25 chr11 37340069 37340542 -113443011 - MER74B LTR ERVL -74 548 67 388 242 0 30 chr11 37340559 37340658 -113442895 + L2 LINE L2 3182 3277 -36 1911 24 0 0 chr11 37341727 37341939 -113441614 - L1P1 LINE L1 -387 5768 5557 251 125 71 0 chr11 37341916 37341972 -113441581 + L1PA3 LINE L1 6096 6155 0 * 567 323 44 8 chr11 37342864 37343112 -113440441 + MIR SINE MIR 1 257 -5 1944 150 10 3 chr11 37343124 37343417 -113440136 - AluSx SINE Alu -17 295 1 198 143 0 0 chr11 37345741 37345776 -113437777 + (TCCA)n Simple_repeat Simple_repeat 3 37 0 385 313 7 14 chr11 37345803 37345950 -113437603 + (TCCA)n Simple_repeat Simple_repeat 1 146 0 320 321 14 21 chr11 37345982 37346122 -113437431 + (TCCA)n Simple_repeat Simple_repeat 4 142 0 537 225 53 137 chr11 37346835 37347120 -113436433 + MIR SINE MIR 2 262 0 490 227 0 15 chr11 37347350 37347482 -113436071 - L1MB4 LINE L1 -4 6176 6047 187 369 35 0 chr11 37348734 37348875 -113434678 + MIR SINE MIR 102 247 -15 180 364 58 8 chr11 37348867 37348988 -113434565 + L2 LINE L2 3146 3272 0 * 34 0 0 0 chr11 37349983 37350017 -113433536 + AT_rich Low_complexity Low_complexity 1 34 0 300 323 10 0 chr11 37350278 37350374 -113433179 + (CACCAT)n Simple_repeat Simple_repeat 2 98 0 411 202 91 0 chr11 37350571 37350670 -113432883 - MIR SINE MIR -71 191 84 238 315 11 11 chr11 37352481 37352570 -113430983 - L2 LINE L2 -1 3312 3224 679 312 15 0 chr11 37352683 37352885 -113430668 - L2 LINE L2 -357 2957 2753 468 335 22 0 chr11 37352892 37353074 -113430479 + MER117 DNA MER1_type 12 197 0 549 280 85 74 chr11 37353094 37353458 -113430095 - MLT1I LTR MaLR 0 409 42 2346 100 0 10 chr11 37353585 37353895 -113429658 + AluY SINE Alu 1 307 -4 184 283 17 0 chr11 37354131 37354191 -113429362 + MIR SINE MIR 74 134 -128 2555 54 3 19 chr11 37354555 37354871 -113428682 - AluY SINE Alu 0 311 1 962 245 29 17 chr11 37354871 37355112 -113428441 - MLT1J1 LTR MaLR -166 280 37 2364 93 0 3 chr11 37355582 37355882 -113427671 - AluSp SINE Alu -14 299 1 1033 141 46 72 chr11 37355892 37356155 -113427398 - L1MC5 LINE L1 -38 7923 7668 288 0 0 0 chr11 37356271 37356303 -113427250 + (CA)n Simple_repeat Simple_repeat 1 32 0 226 314 25 16 chr11 37357190 37357311 -113426242 + CT-rich Low_complexity Low_complexity 2 123 0 258 31 0 0 chr11 37357497 37357529 -113426024 - MADE1 DNA Mariner 0 80 49 270 287 0 11 chr11 37357906 37357993 -113425560 - MIR SINE MIR -131 131 46 3584 101 2 4 chr11 37358859 37359362 -113424191 - L1PA8 LINE L1 -4 6168 5667 597 262 20 0 chr11 37359630 37359779 -113423774 + MIR SINE MIR 34 185 -77 21 0 0 0 chr11 37359781 37359802 -113423751 + AT_rich Low_complexity Low_complexity 1 21 0 204 235 20 0 chr11 37359827 37359878 -113423675 + (CTA)n Simple_repeat Simple_repeat 2 53 0 648 275 107 47 chr11 37361063 37361401 -113422152 - MLT1L LTR MaLR -9 606 249 213 226 262 60 chr11 37361632 37361716 -113421837 + MIR SINE MIR 110 210 -52 4129 137 30 47 chr11 37361930 37362692 -113420861 + L1MB2 LINE L1 5415 6163 -8 256 269 14 97 chr11 37362711 37362856 -113420697 + L1ME4a LINE L1 5466 5598 -2210 955 248 56 67 chr11 37363220 37363579 -113419974 - MLT1J2 LTR MaLR -2 448 94 277 135 39 0 chr11 37364108 37364196 -113419357 - AluJo SINE Alu 0 338 249 1235 204 0 5 chr11 37364196 37364417 -113419136 - AluJo SINE Alu -88 224 5 338 258 125 55 chr11 37364920 37365274 -113418279 - MLT1L LTR MaLR -11 577 176 372 272 26 18 chr11 37366044 37366158 -113417395 - MIR SINE MIR -137 125 11 517 267 114 14 chr11 37366158 37366368 -113417185 - MIR SINE MIR 0 262 32 376 374 79 0 chr11 37366649 37366876 -113416677 + MIR SINE MIR 14 258 -4 434 293 105 0 chr11 37367601 37367734 -113415819 - MIR3 SINE MIR -9 199 53 331 269 181 22 chr11 37367971 37368198 -113415355 + L1ME4a LINE L1 5843 6105 -16 262 244 70 35 chr11 37369134 37369220 -113414333 + MIR SINE MIR 56 144 -118 1536 217 18 15 chr11 37369264 37369601 -113413952 + MER58B DNA MER1_type 1 338 -3 535 234 16 24 chr11 37369813 37369937 -113413616 + MIR SINE MIR 34 156 -106 * 766 298 70 8 chr11 37369932 37370174 -113413379 - MIR SINE MIR -1 261 5 3428 163 44 16 chr11 37370246 37370946 -113412607 - L1MA8 LINE L1 -3 6288 5569 22 0 0 0 chr11 37371534 37371556 -113411997 + GC_rich Low_complexity Low_complexity 1 22 0 589 235 118 38 chr11 37371818 37372056 -113411497 + MIR SINE MIR 4 260 -2 234 191 0 21 chr11 37372163 37372210 -113411343 - L2 LINE L2 -8 3264 3219 296 237 175 26 chr11 37373112 37373226 -113410327 + MIR3 SINE MIR 15 145 -63 602 283 120 37 chr11 37373607 37373989 -113409564 + MLT1J LTR MaLR 1 414 -97 207 288 64 40 chr11 37374196 37374321 -113409232 + L2 LINE L2 3145 3272 0 4759 137 69 69 chr11 37374519 37375420 -113408133 - THE1C-int LTR MaLR -679 901 1 2721 90 14 11 chr11 37375427 37375795 -113407758 - THE1C LTR MaLR -6 369 1 363 239 0 0 chr11 37375814 37375885 -113407668 - LTR67 LTR ERVL -484 73 3 2013 166 27 27 chr11 37375940 37376307 -113407246 - THE1C LTR MaLR -8 367 1 21 0 0 0 chr11 37376312 37376333 -113407220 + AT_rich Low_complexity Low_complexity 1 21 0 333 293 88 7 chr11 37376549 37376696 -113406857 - LTR33 LTR ERVL -2 519 361 258 272 254 35 chr11 37377005 37377237 -113406316 + LTR16C LTR ERVL 209 491 0 733 278 142 0 chr11 37377248 37377460 -113406093 - LTR33 LTR ERVL -264 257 16 1226 310 85 34 chr11 37377651 37378358 -113405195 - ERVL LTR ERVL -384 5380 4638 1883 218 111 20 chr11 37378375 37378902 -113404651 + MLT1F1 LTR MaLR 2 567 0 1731 313 35 30 chr11 37378904 37379611 -113403942 - ERVL LTR ERVL -1140 4624 3914 1331 260 131 13 chr11 37380254 37380712 -113402841 - LTR33 LTR ERVL -7 514 3 196 218 18 36 chr11 37380800 37380855 -113402698 + MIR3 SINE MIR 107 160 -48 374 332 58 26 chr11 37381688 37381878 -113401675 - L2 LINE L2 0 3313 3118 681 198 12 76 chr11 37381894 37382066 -113401487 - MER58B DNA MER1_type 0 341 181 297 365 144 5 chr11 37382133 37382393 -113401160 - L2 LINE L2 -296 3017 2721 434 246 110 8 chr11 37382551 37382669 -113400884 - MIR3 SINE MIR -28 180 51 2199 85 3 0 chr11 37383622 37383915 -113399638 - AluSp SINE Alu -4 309 16 579 346 90 45 chr11 37384882 37385393 -113398160 + LTR67 LTR ERVL 19 552 -5 327 247 144 31 chr11 37385705 37385802 -113397751 - MIR SINE MIR -59 203 96 3403 133 9 9 chr11 37386350 37386901 -113396652 - L1PA10 LINE L1 -4 6164 5614 790 122 0 0 chr11 37386901 37387008 -113396545 + L1PA10 LINE L1 5519 5628 -540 1223 185 14 5 chr11 37387161 37387372 -113396181 - MLT1A1 LTR MaLR -6 359 147 366 23 0 0 chr11 37387372 37387415 -113396138 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 1883 73 8 0 chr11 37387415 37387661 -113395892 - L1PA6 LINE L1 -11 6143 5896 235 314 116 16 chr11 37387761 37387882 -113395671 + MIR SINE MIR 124 256 -6 2182 144 0 0 chr11 37388149 37388462 -113395091 + MER1A DNA MER1_type 85 397 -132 9642 54 0 1 chr11 37388462 37389667 -113393886 + L1P LINE L1 3300 4503 -1643 602 96 48 10 chr11 37390055 37390159 -113393394 + L1P LINE L1 4512 4619 -1527 207 289 29 48 chr11 37390578 37390682 -113392871 + MIR SINE MIR 52 153 -109 447 265 152 13 chr11 37391194 37391345 -113392208 - MIR3 SINE MIR -18 190 19 521 274 112 35 chr11 37391703 37391962 -113391591 - L2 LINE L2 -2 3311 3033 505 127 0 0 chr11 37442494 37442596 -113340957 + AluSg/x SINE Alu 210 311 0 6059 99 0 1 chr11 37442598 37443418 -113340135 + L1PA8 LINE L1 5354 6172 0 549 231 19 58 chr11 37443449 37443657 -113339896 + L1ME LINE L1 801 1000 -5070 197 255 160 9 chr11 37443977 37444083 -113339470 - L2 LINE L2 -61 3211 3090 659 276 107 0 chr11 37444148 37444373 -113339180 - MIR SINE MIR -1 261 13 606 248 62 62 chr11 37444615 37444841 -113338712 - MIR SINE MIR -12 250 25 309 68 0 0 chr11 37445229 37445273 -113338280 + (CA)n Simple_repeat Simple_repeat 2 45 0 497 287 44 17 chr11 37446454 37446635 -113336918 - MIR SINE MIR -73 189 4 283 296 40 8 chr11 37446663 37446788 -113336765 + MIR SINE MIR 72 200 -62 414 278 232 8 chr11 37446803 37447044 -113336509 - L2 LINE L2 0 3313 3019 398 194 0 0 chr11 37447050 37447122 -113336431 - AluJ/FRAM SINE Alu 0 302 231 2539 115 27 0 chr11 37447455 37447820 -113335733 - THE1C LTR MaLR 0 375 1 1061 238 5 5 chr11 37448211 37448425 -113335128 - MER58A DNA MER1_type -8 216 3 370 318 67 41 chr11 37449006 37449201 -113334352 + MIR SINE MIR 24 223 -39 249 291 25 0 chr11 37450068 37450147 -113333406 + L2 LINE L2 3233 3313 0 1129 300 50 18 chr11 37450906 37451748 -113331805 + L2 LINE L2 2435 3312 -1 476 301 127 33 chr11 37452691 37453023 -113330530 - L2 LINE L2 -16 3297 2935 461 252 16 16 chr11 37453692 37453815 -113329738 - MIR SINE MIR -112 150 28 395 291 70 6 chr11 37453870 37454028 -113329525 + MIR SINE MIR 79 246 -16 410 224 116 48 chr11 37455329 37455476 -113328077 - MER103 DNA DNA -8 158 2 315 226 36 12 chr11 37456531 37456615 -113326938 - MER94 DNA DNA -43 91 6 764 320 36 13 chr11 37456749 37457154 -113326399 - LTR16A1 LTR ERVL -2 481 72 2544 65 3 0 chr11 37457345 37457652 -113325901 - AluY SINE Alu -3 308 1 1205 122 26 74 chr11 37459462 37459692 -113323861 + MER20 DNA MER1_type 1 219 0 471 278 61 53 chr11 37459692 37460066 -113323487 - L1ME4a LINE L1 -188 5933 5547 403 328 5 29 chr11 37461225 37461429 -113322124 + MIR SINE MIR 16 214 -48 216 67 0 0 chr11 37462448 37462478 -113321075 + (TG)n Simple_repeat Simple_repeat 2 31 0 6372 28 17 16 chr11 37463023 37463785 -113319768 + L1PA5 LINE L1 5392 6154 0 240 293 71 0 chr11 37464083 37464182 -113319371 - MIR SINE MIR -26 236 131 199 208 21 21 chr11 37464180 37464228 -113319325 - L2 LINE L2 -4 3309 3262 * 21 36 0 0 chr11 37465728 37465756 -113317797 + AT_rich Low_complexity Low_complexity 1 28 0 1044 299 28 30 chr11 37466089 37466484 -113317069 + LTR16C LTR ERVL 98 491 0 2251 183 68 32 chr11 37466535 37467037 -113316516 - MLT2B1 LTR ERVL 0 520 1 630 233 44 44 chr11 37469489 37469695 -113313858 - LTR16A1 LTR ERVL 0 457 252 317 307 79 16 chr11 37470928 37471055 -113312498 - MIR SINE MIR -62 200 66 278 196 118 0 chr11 37471090 37471141 -113312412 - L2 LINE L2 -11 3302 3246 642 307 50 24 chr11 37471582 37472077 -113311476 - L1MEd LINE L1 -4880 1239 732 2143 141 32 9 chr11 37472082 37472430 -113311123 - MLT1A1 LTR MaLR 0 365 10 520 266 88 16 chr11 37473278 37473470 -113310083 - Charlie8 DNA MER1_type -2199 218 13 270 0 0 0 chr11 37473939 37473969 -113309584 + (T)n Simple_repeat Simple_repeat 1 30 0 25863 169 30 31 chr11 37474047 37476596 -113306957 + L1PA10 LINE L1 2 2551 -3910 2264 87 3 7 chr11 37476596 37476896 -113306657 + AluY SINE Alu 1 299 -12 25863 169 30 31 chr11 37476896 37479952 -113303601 + L1PA10 LINE L1 2551 5671 -790 971 120 7 0 chr11 37479954 37480104 -113303449 - L1P LINE L1 -1356 4790 4640 * 5720 86 21 8 chr11 37480101 37480901 -113302652 + L1PA10 LINE L1 5672 6482 -1 931 190 34 11 chr11 37480990 37481169 -113302384 + L1PA16 LINE L1 5975 6157 -9 1869 154 31 0 chr11 37481206 37481499 -113302054 + AluJb SINE Alu 11 312 0 1165 249 29 87 chr11 37485017 37485534 -113298019 + L2 LINE L2 2827 3313 0 371 278 14 42 chr11 37485550 37485694 -113297859 + MIR SINE MIR 51 190 -72 936 208 22 98 chr11 37485700 37485974 -113297579 - MIR SINE MIR -2 260 8 315 0 0 0 chr11 37487407 37487442 -113296111 + (TG)n Simple_repeat Simple_repeat 1 35 0 261 128 0 0 chr11 37487444 37487491 -113296062 + (GA)n Simple_repeat Simple_repeat 2 48 0 1841 158 0 17 chr11 37487514 37487805 -113295748 + AluSx SINE Alu 1 286 -26 224 54 54 0 chr11 37487812 37487849 -113295704 + (CAGAGA)n Simple_repeat Simple_repeat 4 42 0 960 115 0 8 chr11 37488594 37488724 -113294829 + AluSq/x SINE Alu 5 133 -179 585 301 31 25 chr11 37488924 37489120 -113294433 - MIR SINE MIR -56 206 10 186 309 36 12 chr11 37489643 37489727 -113293826 + L2 LINE L2 3165 3250 -22 354 261 108 23 chr11 37489935 37490065 -113293488 + L2 LINE L2 3168 3308 -5 1104 111 0 0 chr11 37490206 37490386 -113293167 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 205 333 124 19 chr11 37490402 37490507 -113293046 - L2 LINE L2 -21 3251 3136 443 262 166 38 chr11 37490749 37491039 -113292514 + MER102a DNA MER1_type 1 327 -3 538 180 27 0 chr11 37493545 37493656 -113289897 - MLT1F LTR MaLR 0 542 429 306 0 0 0 chr11 37493835 37493869 -113289684 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 2638 21 7 0 chr11 37493869 37494157 -113289396 - L1PA2 LINE L1 -13 6142 5853 323 294 49 28 chr11 37494166 37494309 -113289244 + MIR SINE MIR 85 230 -32 1825 248 120 17 chr11 37494831 37495432 -113288121 - MLT2F LTR ERVL 0 663 1 2856 205 43 3 chr11 37495572 37496148 -113287405 + MER90 LTR ERV1 15 613 -1 226 73 49 0 chr11 37496148 37496189 -113287364 + (TA)n Simple_repeat Simple_repeat 1 43 0 274 213 0 0 chr11 37496194 37496241 -113287312 + Tigger5 DNA MER2_type 16 62 -2261 256 172 172 0 chr11 37496241 37496299 -113287254 + L1PB4 LINE L1 5970 6037 -119 656 128 0 0 chr11 37496299 37496385 -113287168 - AluS SINE Alu -226 87 2 429 223 154 8 chr11 37498415 37498545 -113285008 - MIR SINE MIR -32 230 82 360 331 69 23 chr11 37499179 37499309 -113284244 - MIR SINE MIR -112 150 15 219 286 16 16 chr11 37500088 37500151 -113283402 + MIR SINE MIR 4 66 -196 564 273 154 49 chr11 37500162 37500448 -113283105 + LTR33 LTR ERVL 24 339 -182 250 244 0 100 chr11 37500608 37500698 -113282855 + LTR33 LTR ERVL 441 521 0 486 293 66 6 chr11 37500701 37500868 -113282685 + MIR SINE MIR 76 252 -10 184 255 0 20 chr11 37501061 37501112 -113282441 + MER5A DNA MER1_type 136 185 -4 396 269 121 50 chr11 37501453 37501635 -113281918 - MIR SINE MIR -49 213 19 189 311 75 0 chr11 37501828 37501919 -113281634 - L3 LINE CR1 -353 1224 1123 476 224 21 94 chr11 37501919 37502111 -113281442 + MER5B DNA MER1_type 1 178 0 189 311 75 0 chr11 37502111 37502125 -113281428 - L3 LINE CR1 -454 1123 1111 24 0 0 0 chr11 37503169 37503193 -113280360 + AT_rich Low_complexity Low_complexity 1 24 0 466 303 113 23 chr11 37503293 37503514 -113280039 - MIR SINE MIR -10 252 12 303 291 117 105 chr11 37504858 37505191 -113278362 - L1M2 LINE L1 -5737 1112 776 355 299 91 26 chr11 37509782 37509936 -113273617 + MER102a DNA MER1_type 13 176 -154 956 296 21 4 chr11 37509962 37510205 -113273348 - MIR SINE MIR -12 250 4 333 317 41 8 chr11 37510212 37510335 -113273218 + MER102a DNA MER1_type 178 304 -26 269 261 120 0 chr11 37511182 37511274 -113272279 - MIR SINE MIR -54 208 106 1007 183 0 24 chr11 37511849 37512018 -113271535 + FAM SINE Alu 1 165 -10 1015 259 90 35 chr11 37512518 37512919 -113270634 - LTR16A LTR ERVL -7 443 21 1527 168 4 4 chr11 37513048 37513316 -113270237 + L1MA8 LINE L1 6011 6278 -13 2094 137 0 0 chr11 37513527 37513842 -113269711 - AluSx SINE Alu 0 315 1 2621 68 3 0 chr11 37514851 37515174 -113268379 - THE1A LTR MaLR -31 324 1 321 362 183 19 chr11 37515177 37515904 -113267649 - L2 LINE L2 -662 2652 1807 330 276 0 20 chr11 37516215 37516313 -113267240 - 7SK RNA RNA -97 96 1 580 303 105 69 chr11 37516398 37517233 -113266320 + L2 LINE L2 2065 3309 -4 248 273 0 0 chr11 37517244 37517299 -113266254 - L2 LINE L2 -206 3066 3012 448 164 45 82 chr11 37519856 37519966 -113263587 + MER45A DNA AcHobo 72 177 -1 751 290 31 8 chr11 37520121 37520376 -113263177 + MIR SINE MIR 2 262 0 3351 182 75 23 chr11 37520685 37521387 -113262166 - MER21B LTR ERV1 -124 739 1 213 39 0 0 chr11 37521433 37521459 -113262094 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 4866 137 65 38 chr11 37521833 37522709 -113260844 + MER4D LTR ERV1 1 900 -3 754 256 108 20 chr11 37523062 37523367 -113260186 - L1ME4a LINE L1 -219 5902 5571 2979 127 0 2 chr11 37524785 37525225 -113258328 - L1PA15 LINE L1 0 6165 5727 1943 162 27 3 chr11 37525538 37525872 -113257681 - MLT1A1 LTR MaLR 0 365 24 7152 19 0 0 chr11 37525872 37526696 -113256857 - L1PA2 LINE L1 -1087 5059 4236 8110 10 0 0 chr11 37526696 37527795 -113255758 + L1PA2 LINE L1 5058 6155 0 277 83 0 0 chr11 37527799 37527835 -113255718 - MLT1A1 LTR MaLR -338 36 1 184 277 157 0 chr11 37530141 37530224 -113253329 - L2 LINE L2 0 3272 3177 205 256 33 100 chr11 37530388 37530478 -113253075 + MIR SINE MIR 92 175 -87 313 28 0 0 chr11 37531321 37531357 -113252196 + tRNA-Arg-AGA tRNA tRNA 1 36 -40 376 254 113 35 chr11 37531828 37531970 -113251583 + MIR SINE MIR 23 175 -87 1188 232 0 0 chr11 37532003 37532223 -113251330 - MER58A DNA MER1_type -1 223 4 1053 192 21 56 chr11 37532241 37532351 -113251202 - MER33 DNA MER1_type -2269 316 204 2237 118 0 0 chr11 37532351 37532655 -113250898 + AluSq SINE Alu 3 306 -7 1053 192 21 56 chr11 37532655 37532831 -113250722 - MER33 DNA MER1_type -2381 204 40 437 253 37 100 chr11 37532848 37533117 -113250436 - MER112 DNA MER1_type -3 253 2 191 196 43 0 chr11 37533341 37533387 -113250166 - MIR SINE MIR -63 145 98 819 153 8 0 chr11 37533403 37533527 -113250026 + FLAM_C SINE Alu 1 125 -18 186 125 0 0 chr11 37533538 37533545 -113250008 + (GAA)n Simple_repeat Simple_repeat 2 8 -25 2141 134 3 6 chr11 37533545 37533858 -113249695 + AluSq SINE Alu 1 312 -1 186 125 0 0 chr11 37533858 37533882 -113249671 + (GAA)n Simple_repeat Simple_repeat 7 33 0 1357 193 45 0 chr11 37534226 37534515 -113249038 - L1PB4 LINE L1 -21 6145 5840 1965 134 4 4 chr11 37534624 37534899 -113248654 + AluJb SINE Alu 5 279 -33 180 0 0 0 chr11 37534901 37534921 -113248632 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 454 288 75 13 chr11 37535187 37535379 -113248174 + MIR SINE MIR 6 206 -56 865 150 24 0 chr11 37536250 37536377 -113247176 + FLAM_C SINE Alu 3 132 -11 370 287 72 24 chr11 37536465 37536632 -113246921 + MIR SINE MIR 85 259 -3 2404 53 3 0 chr11 37537113 37537429 -113246124 - AluY SINE Alu 0 317 1 525 173 55 9 chr11 37537880 37537990 -113245563 + MIR SINE MIR 76 190 -72 21 0 0 0 chr11 37539010 37539031 -113244522 + AT_rich Low_complexity Low_complexity 1 21 0 271 330 43 0 chr11 37539502 37539596 -113243957 - L2 LINE L2 -17 3255 3158 962 253 17 17 chr11 37539602 37539843 -113243710 - MIR SINE MIR 0 262 22 330 256 108 45 chr11 37540110 37540333 -113243220 - L1ME4a LINE L1 -234 5887 5651 2373 91 0 0 chr11 37540505 37540801 -113242752 - AluSx SINE Alu -16 296 1 463 289 84 5 chr11 37541125 37541315 -113242238 + MIR SINE MIR 1 205 -57 646 274 119 36 chr11 37541754 37542116 -113241437 - MLT1K LTR MaLR -43 545 154 182 36 0 36 chr11 37542322 37542350 -113241203 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 25 31 0 0 chr11 37542635 37542667 -113240886 + AT_rich Low_complexity Low_complexity 1 32 0 2236 104 3 3 chr11 37544070 37544368 -113239185 - AluSp SINE Alu -15 298 1 317 310 47 16 chr11 37545703 37545832 -113237721 + MIR SINE MIR 21 153 -109 654 264 6 16 chr11 37546057 37546239 -113237314 + MIR SINE MIR 58 237 -25 1625 193 51 28 chr11 37546774 37547163 -113236390 - L1MD3 LINE L1 -9 7986 7589 769 283 31 0 chr11 37547303 37547526 -113236027 + MIR SINE MIR 16 245 -17 28 48 0 0 chr11 37548136 37548178 -113235375 + AT_rich Low_complexity Low_complexity 1 42 0 434 228 106 63 chr11 37548209 37548398 -113235155 + MER6B DNA MER2_type 1 197 -13 1272 92 10 46 chr11 37548641 37548837 -113234716 - MER30B DNA MER1_type 0 190 2 730 286 33 0 chr11 37549184 37549394 -113234159 - MIR SINE MIR -34 228 12 233 303 0 0 chr11 37549396 37549462 -113234091 + MIR SINE MIR 176 241 -21 712 287 29 5 chr11 37550283 37550492 -113233061 + MIR SINE MIR 13 226 -36 180 258 75 0 chr11 37551511 37551604 -113231949 - MER5A DNA MER1_type -81 108 9 270 288 79 29 chr11 37553083 37553222 -113230331 + MIR SINE MIR 117 262 0 224 281 101 0 chr11 37554734 37554823 -113228730 + MIR SINE MIR 80 177 -85 580 221 27 27 chr11 37554889 37555038 -113228515 - MIR SINE MIR -91 171 23 1501 269 42 8 chr11 37555137 37555609 -113227944 - MER113 DNA MER1_type? -33 488 1 554 287 78 41 chr11 37556319 37556587 -113226966 - MLT1I LTR MaLR 0 409 132 1502 270 62 19 chr11 37556588 37557054 -113226499 - LTR16C LTR ERVL 0 491 6 242 187 67 40 chr11 37557059 37557134 -113226419 - MLT1I LTR MaLR -274 135 59 1117 189 14 27 chr11 37557253 37557475 -113226078 - MER20 DNA MER1_type 0 219 1 243 274 32 0 chr11 37557820 37557882 -113225671 - LTR16C LTR ERVL 0 491 428 257 204 0 0 chr11 37558223 37558277 -113225276 + MIR SINE MIR 99 152 -110 362 246 90 15 chr11 37558372 37558506 -113225047 + MIR SINE MIR 107 250 -12 449 304 149 0 chr11 37558540 37558734 -113224819 - MIR SINE MIR 0 262 40 270 344 86 0 chr11 37559553 37559681 -113223872 + MIR SINE MIR 47 185 -77 644 270 107 0 chr11 37560213 37560428 -113223125 + MIR SINE MIR 24 261 -1 568 306 19 24 chr11 37560679 37560885 -113222668 - MIR SINE MIR -26 236 32 1781 164 7 17 chr11 37561322 37561620 -113221933 - AluJb SINE Alu -17 295 1 542 192 108 8 chr11 37561984 37562114 -113221439 + MER103 DNA DNA 16 158 -8 2101 152 0 0 chr11 37562139 37562449 -113221104 + AluSx SINE Alu 1 310 -2 361 254 65 22 chr11 37564956 37565094 -113218459 - L1ME4a LINE L1 -6 6115 5972 2003 149 0 0 chr11 37565167 37565456 -113218097 - AluSc SINE Alu -20 289 1 226 332 45 14 chr11 37565657 37565877 -113217676 - L1ME4a LINE L1 -303 5818 5592 2019 124 0 54 chr11 37566047 37566361 -113217192 - AluSg SINE Alu -13 297 1 220 244 56 78 chr11 37567306 37567396 -113216157 - MIR SINE MIR -86 176 89 2337 111 0 13 chr11 37567412 37567718 -113215835 - AluSx SINE Alu -10 302 1 236 284 14 0 chr11 37568336 37568410 -113215143 - HsTC2 DNA Tc2 -1819 79 5 367 124 168 7 chr11 37568635 37568761 -113214792 - MER20 DNA MER1_type -1 218 1 1373 198 6 55 chr11 37568823 37569151 -113214402 - AluJo SINE Alu 0 312 1 327 250 24 0 chr11 37569911 37569995 -113213558 - L2 LINE L2 -216 3056 2971 276 197 13 26 chr11 37570225 37570301 -113213252 - HsTC2 DNA Tc2 -1820 78 4 438 272 67 33 chr11 37571207 37571387 -113212166 - L1ME4a LINE L1 -1 6120 5935 2183 139 0 0 chr11 37571387 37571697 -113211856 + AluSg SINE Alu 1 310 0 438 272 67 33 chr11 37571697 37571824 -113211729 - L1ME4a LINE L1 -186 5935 5814 278 371 8 30 chr11 37572037 37572169 -113211384 + MIR SINE MIR 17 145 -63 236 260 0 0 chr11 37572203 37572253 -113211300 + MIR SINE MIR 213 262 0 489 264 75 33 chr11 37572763 37572975 -113210578 + MIR SINE MIR 33 253 -9 478 290 0 14 chr11 37573251 37573389 -113210164 - MIR3 SINE MIR -48 160 25 2242 106 3 3 chr11 37574407 37574710 -113208843 - AluSx SINE Alu -9 303 1 768 164 0 23 chr11 37575449 37575577 -113207976 + FLAM_C SINE Alu 2 126 -17 581 248 29 78 chr11 37575704 37575910 -113207643 - MER117 DNA MER1_type 0 197 2 1187 59 13 0 chr11 37577108 37577261 -113206292 + L1PA7 LINE L1 6000 6154 0 541 271 0 53 chr11 37577269 37577468 -113206085 + MIR SINE MIR 46 230 -32 779 250 259 6 chr11 37578875 37579211 -113204342 + L2 LINE L2 2893 3313 0 312 167 0 0 chr11 37579462 37579534 -113204019 + (TG)n Simple_repeat Simple_repeat 1 72 0 3396 120 12 6 chr11 37579628 37580137 -113203416 - MER41E LTR ERV1 0 512 1 1022 155 0 23 chr11 37580507 37580681 -113202872 - AluJb SINE Alu -6 306 137 200 57 0 29 chr11 37580772 37580807 -113202746 + (CAA)n Simple_repeat Simple_repeat 2 35 0 633 248 122 62 chr11 37581255 37581739 -113201814 - L1MC4a LINE L1 -1859 5949 5437 29 0 0 0 chr11 37581818 37581847 -113201706 + AT_rich Low_complexity Low_complexity 1 29 0 271 340 0 10 chr11 37582701 37582804 -113200749 - MIR SINE MIR -116 146 45 201 121 0 0 chr11 37583801 37583834 -113199719 + (TCCA)n Simple_repeat Simple_repeat 1 33 0 249 185 93 0 chr11 37584594 37584648 -113198905 + MIR SINE MIR 43 101 -107 1004 293 109 18 chr11 37584684 37585070 -113198483 - MLT1K LTR MaLR -10 578 158 1042 184 104 0 chr11 37585220 37585421 -113198132 - MER58A DNA MER1_type -2 222 1 197 271 0 0 chr11 37585474 37585522 -113198031 + MIR SINE MIR 215 262 0 213 240 0 0 chr11 37585542 37585592 -113197961 + (TAA)n Simple_repeat Simple_repeat 3 52 0 292 248 53 9 chr11 37585689 37585802 -113197751 - MIR3 SINE MIR -23 185 68 437 145 0 14 chr11 37586616 37586685 -113196868 - MER58 DNA MER1_type 0 2420 2353 251 218 195 23 chr11 37586836 37586923 -113196630 + MIR SINE MIR 63 164 -98 2904 78 8 0 chr11 37587166 37587552 -113196001 - L1PA10 LINE L1 -4 6164 5776 39 22 0 0 chr11 37587619 37587665 -113195888 + AT_rich Low_complexity Low_complexity 1 46 0 880 127 16 0 chr11 37587686 37587812 -113195741 - AluJb SINE Alu -175 137 10 257 212 204 9 chr11 37588483 37588596 -113194957 + MIR SINE MIR 34 168 -94 540 0 0 0 chr11 37588627 37588687 -113194866 + (CAAAA)n Simple_repeat Simple_repeat 1 60 0 488 274 16 89 chr11 37589232 37589422 -113194131 - Charlie8 DNA MER1_type -2057 360 185 1962 135 3 57 chr11 37589531 37589849 -113193704 + AluSx SINE Alu 9 309 -3 2085 124 0 13 chr11 37590069 37590367 -113193186 - AluSx SINE Alu -14 298 5 198 274 0 0 chr11 37590950 37591001 -113192552 - L2 LINE L2 -4 3268 3218 2085 207 30 45 chr11 37592522 37593030 -113190523 - MLT1D LTR MaLR -4 501 2 601 287 37 28 chr11 37593403 37593619 -113189934 + MIR SINE MIR 8 225 -37 460 306 18 18 chr11 37593629 37593799 -113189754 + L3 LINE CR1 1293 1462 -115 256 367 8 8 chr11 37593811 37593931 -113189622 + MER5A DNA MER1_type 18 137 -52 3808 118 68 5 chr11 37593964 37594582 -113188971 - L1MC1 LINE L1 -15 6318 5662 667 310 9 0 chr11 37594919 37595132 -113188421 + MIR SINE MIR 42 256 -6 257 306 12 0 chr11 37595666 37595751 -113187802 + MIR SINE MIR 65 150 -112 333 314 8 0 chr11 37596237 37596355 -113187198 - L1ME3A LINE L1 0 6170 6052 2369 108 0 3 chr11 37597516 37597821 -113185732 - AluSq SINE Alu -9 304 1 426 323 80 51 chr11 37597994 37598307 -113185246 - L2 LINE L2 0 3272 2951 226 299 126 0 chr11 37599946 37600033 -113183520 - MIR3 SINE MIR 0 208 111 232 259 0 0 chr11 37600178 37600236 -113183317 - MIR SINE MIR -121 87 30 543 328 74 14 chr11 37602080 37602196 -113181357 + L2 LINE L2 2997 3105 -208 2746 88 11 16 chr11 37602196 37602573 -113180980 + THE1C LTR MaLR 1 375 0 543 328 74 14 chr11 37602573 37602752 -113180801 + L2 LINE L2 3105 3310 -3 183 363 88 0 chr11 37602870 37602961 -113180592 - L2 LINE L2 -40 3232 3134 200 265 0 0 chr11 37603201 37603250 -113180303 + MIR SINE MIR 210 258 -4 212 179 0 0 chr11 37603370 37603409 -113180144 + (TTATA)n Simple_repeat Simple_repeat 1 39 0 255 286 13 13 chr11 37604656 37604733 -113178820 - MIR SINE MIR -175 87 11 22 0 0 0 chr11 37605265 37605287 -113178266 + AT_rich Low_complexity Low_complexity 1 22 0 199 244 154 26 chr11 37605456 37605534 -113178019 + MIR SINE MIR 20 107 -155 261 298 48 0 chr11 37606254 37606338 -113177215 - MER5A DNA MER1_type -99 90 3 2274 122 0 3 chr11 37607521 37607833 -113175720 - AluSq SINE Alu -2 311 1 230 81 27 0 chr11 37608537 37608574 -113174979 + (GAAAA)n Simple_repeat Simple_repeat 3 40 0 2301 105 0 0 chr11 37608618 37608912 -113174641 - AluSg SINE Alu -16 294 1 1300 197 157 10 chr11 37610469 37610769 -113172784 - MER2 DNA MER2_type 0 345 2 417 39 0 0 chr11 37611519 37611570 -113171983 + (TC)n Simple_repeat Simple_repeat 1 51 0 211 292 125 17 chr11 37611679 37611799 -113171754 + MER5B DNA MER1_type 1 133 -45 2209 118 20 0 chr11 37611982 37612288 -113171265 + AluSx SINE Alu 1 312 0 244 268 32 76 chr11 37612399 37612556 -113170997 - L1MC/D LINE L1 -2132 5676 5527 1048 220 79 26 chr11 37614673 37615019 -113168534 + MSTD LTR MaLR 1 396 0 229 340 77 0 chr11 37615738 37615894 -113167659 + MIR3 SINE MIR 34 201 -7 1688 163 179 8 chr11 37616572 37616964 -113166589 + L1MA4A LINE L1 5822 6280 -23 550 273 59 11 chr11 37617946 37618133 -113165420 + MIR SINE MIR 28 223 -39 726 168 37 47 chr11 37618513 37618704 -113164849 - MER53 DNA DNA 0 189 1 23 0 0 0 chr11 37621082 37621105 -113162448 + AT_rich Low_complexity Low_complexity 1 23 0 384 286 11 0 chr11 37622093 37622184 -113161369 + MER58 DNA MER1_type 1 92 -2328 861 174 64 6 chr11 37622190 37622362 -113161191 - MLT1A1 LTR MaLR 0 365 184 23 33 0 0 chr11 37622371 37622401 -113161152 + AT_rich Low_complexity Low_complexity 1 30 0 1884 145 0 30 chr11 37622410 37622707 -113160846 - AluJb SINE Alu -23 289 2 1661 213 30 11 chr11 37622750 37623104 -113160449 - MLT1A1 LTR MaLR -1 364 3 493 65 0 0 chr11 37623104 37623165 -113160388 + MADE1 DNA Mariner 20 80 0 183 269 0 19 chr11 37623165 37623217 -113160336 - MIR SINE MIR -156 106 56 240 35 0 0 chr11 37624041 37624070 -113159483 + (TA)n Simple_repeat Simple_repeat 1 29 0 189 0 0 0 chr11 37624087 37624108 -113159445 + (GA)n Simple_repeat Simple_repeat 2 22 0 2063 102 4 4 chr11 37624114 37624380 -113159173 - AluSg SINE Alu -40 270 5 30 27 0 0 chr11 37625083 37625120 -113158433 + AT_rich Low_complexity Low_complexity 1 37 0 484 301 45 17 chr11 37625210 37625386 -113158167 - MIR SINE MIR -3 259 79 422 271 53 0 chr11 37625428 37625561 -113157992 + MIR SINE MIR 48 187 -75 291 222 16 0 chr11 37625566 37625629 -113157924 - MIR SINE MIR -5 257 194 375 148 0 0 chr11 37625925 37625986 -113157567 - MER31A LTR ERV1 0 485 425 1869 154 31 0 chr11 37627511 37627804 -113155749 - AluJb SINE Alu 0 312 11 931 190 34 11 chr11 37627841 37628020 -113155533 - L1PA16 LINE L1 -9 6157 5975 6904 82 6 16 chr11 37628109 37629190 -113154363 - L1PA10 LINE L1 -1 6167 5095 598 308 94 20 chr11 37629217 37629689 -113153864 + L2 LINE L2 2595 3165 -107 438 75 0 170 chr11 37630505 37630599 -113152954 - MADE1 DNA Mariner 0 80 3 242 345 55 9 chr11 37630612 37630722 -113152831 + MIR SINE MIR 29 143 -119 514 296 74 37 chr11 37631128 37631317 -113152236 + MER91A DNA MER1_type 1 196 0 217 197 42 56 chr11 37631317 37631351 -113152202 + L2 LINE L2 3232 3264 -8 4829 153 46 10 chr11 37631741 37632632 -113150921 - Tigger3b DNA MER2_type -1 1230 308 1358 167 0 9 chr11 37632650 37632866 -113150687 - AluJb SINE Alu -15 297 84 1088 171 271 4 chr11 37632867 37633118 -113150435 - Tigger3b DNA MER2_type -913 318 1 11613 70 7 11 chr11 37633288 37634863 -113148690 + L1P LINE L1 3110 4677 -1469 264 312 55 9 chr11 37635481 37635590 -113147963 + MLT1K LTR MaLR 11 124 -464 459 236 188 18 chr11 37635722 37635951 -113147602 + MLT1K LTR MaLR 321 588 0 22 0 0 0 chr11 37636245 37636267 -113147286 + AT_rich Low_complexity Low_complexity 1 22 0 2461 153 33 19 chr11 37636684 37637103 -113146450 + MSTB1 LTR MaLR 8 432 0 276 345 146 12 chr11 37637121 37637292 -113146261 + MIR SINE MIR 48 241 -21 4610 125 3 1 chr11 37637695 37638406 -113145147 - L1P LINE L1 -1134 5012 4301 231 191 0 0 chr11 37639590 37639632 -113143921 - MIR SINE MIR 0 262 221 651 268 78 15 chr11 37639634 37639839 -113143714 - MIR SINE MIR -5 257 40 476 252 80 61 chr11 37640530 37640793 -113142760 + L1MC4a LINE L1 6681 6842 -966 281 321 152 0 chr11 37641898 37642010 -113141543 + L2 LINE L2 3182 3310 -3 286 292 140 43 chr11 37642382 37642639 -113140914 + MLT1I LTR MaLR 14 295 -114 199 260 91 0 chr11 37643171 37643248 -113140305 + L2 LINE L2 1339 1422 -1892 592 271 116 5 chr11 37643271 37643470 -113140083 + MIR SINE MIR 14 234 -28 1556 189 0 53 chr11 37643716 37644039 -113139514 - AluJo SINE Alu -6 306 1 308 83 67 17 chr11 37644191 37644251 -113139302 - Alu SINE Alu 0 302 240 981 96 15 0 chr11 37644254 37644390 -113139163 - AluJb SINE Alu -174 138 1 221 288 273 27 chr11 37644401 37644881 -113138672 + L2 LINE L2 1875 2472 -842 2532 118 31 6 chr11 37645459 37645814 -113137739 - THE1B LTR MaLR 0 364 1 734 241 0 0 chr11 37646024 37646157 -113137396 + FLAM_A SINE Alu 1 133 0 796 282 46 8 chr11 37646244 37646485 -113137068 - MIR SINE MIR -12 250 1 255 231 77 22 chr11 37647994 37648085 -113135468 - L1ME4a LINE L1 -13 6108 6013 410 178 11 22 chr11 37648435 37648525 -113135028 + MIR SINE MIR 56 144 -118 287 31 0 0 chr11 37648525 37648557 -113134996 + MSTA LTR MaLR 1 32 -396 485 299 74 56 chr11 37648948 37649396 -113134157 + L2 LINE L2 2817 3272 0 2362 53 0 0 chr11 37649846 37650151 -113133402 - AluY SINE Alu 0 305 1 386 253 44 32 chr11 37650265 37650423 -113133130 + Charlie7 DNA MER1_type 6 165 -2447 207 339 0 0 chr11 37650496 37650552 -113133001 - MER91 DNA MER1_type -3 137 82 3987 159 55 62 chr11 37651683 37652402 -113131151 + L1MB4 LINE L1 5040 5753 -427 1866 146 3 7 chr11 37652402 37652689 -113130864 + AluSx SINE Alu 1 286 -26 3987 159 55 62 chr11 37652689 37653085 -113130468 + L1MB4 LINE L1 5753 6150 -30 387 306 110 32 chr11 37653795 37654014 -113129539 + MIR SINE MIR 8 243 -19 521 289 68 50 chr11 37654285 37654607 -113128946 + L2 LINE L2 2982 3309 -4 2116 218 21 7 chr11 37655339 37655762 -113127791 + MLT1D LTR MaLR 77 505 0 426 317 12 25 chr11 37655871 37656032 -113127521 - L2 LINE L2 0 3313 3155 4153 106 87 27 chr11 37656165 37656642 -113126911 - Tigger3(Golem) DNA MER2_type 0 3029 2495 2128 146 0 7 chr11 37656642 37656951 -113126602 - AluJb SINE Alu -5 307 1 4153 106 87 27 chr11 37656951 37657172 -113126381 - Tigger3(Golem) DNA MER2_type -534 2495 2289 15919 179 27 25 chr11 37657174 37657753 -113125800 - L1MA4 LINE L1 -366 6116 5539 198 0 0 0 chr11 37657763 37657785 -113125768 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 3136 88 7 7 chr11 37657785 37658185 -113125368 - L1PA10 LINE L1 -17 6151 5749 15919 179 27 25 chr11 37658185 37662558 -113120995 - L1MA4 LINE L1 -943 5539 1166 2329 94 10 3 chr11 37662558 37662865 -113120688 - AluSp SINE Alu -4 309 1 15919 179 27 25 chr11 37662865 37664033 -113119520 - L1MA4 LINE L1 -5316 1166 1 3063 119 8 30 chr11 37664046 37664515 -113119038 - L1PA15 LINE L1 0 6165 5707 434 218 0 0 chr11 37664516 37664594 -113118959 - Tigger3(Golem) DNA MER2_type -2950 79 2 33 0 0 0 chr11 37665116 37665149 -113118404 + AT_rich Low_complexity Low_complexity 1 33 0 2195 130 14 23 chr11 37665648 37666002 -113117551 - L1MC1 LINE L1 -9 6324 5974 316 252 102 65 chr11 37666031 37666325 -113117228 - L1ME4a LINE L1 -29 6092 5788 498 266 121 0 chr11 37667807 37667980 -113115573 - MIR SINE MIR -49 213 20 604 259 98 36 chr11 37668042 37668233 -113115320 + MIR SINE MIR 8 216 -46 1842 177 7 0 chr11 37668233 37668532 -113115021 + AluJo SINE Alu 5 305 -7 604 259 98 36 chr11 37668532 37668564 -113114989 + MIR SINE MIR 216 245 -17 945 254 58 4 chr11 37668725 37668965 -113114588 - MIR SINE MIR -2 260 8 637 259 118 48 chr11 37669008 37669236 -113114317 - MIR SINE MIR 0 262 19 321 275 45 19 chr11 37669248 37669360 -113114193 + MER5B DNA MER1_type 21 120 -58 233 333 9 18 chr11 37669261 37669375 -113114178 - MER5A DNA MER1_type -22 167 55 * 1657 170 3 60 chr11 37670223 37670541 -113113012 + AluJo SINE Alu 1 300 -12 484 274 41 41 chr11 37671578 37671775 -113111778 - MIR SINE MIR -34 228 32 342 247 0 22 chr11 37673058 37673147 -113110406 + MER103 DNA DNA 2 88 -78 323 344 38 0 chr11 37673269 37673394 -113110159 + L2 LINE L2 3184 3313 0 515 281 92 23 chr11 37675394 37675611 -113107942 + MIR SINE MIR 18 249 -13 351 291 68 73 chr11 37677298 37677371 -113106182 + MIR SINE MIR 20 92 -170 3239 145 35 25 chr11 37677371 37677424 -113106129 - L1MB3 LINE L1 -1 6182 6131 249 57 0 0 chr11 37677424 37677459 -113106094 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 2359 72 0 0 chr11 37677459 37677737 -113105816 - AluY SINE Alu -30 281 4 3239 145 35 25 chr11 37677737 37678282 -113105271 - L1MB3 LINE L1 -51 6132 5577 351 291 68 73 chr11 37678282 37678442 -113105111 + MIR SINE MIR 92 252 -10 228 303 0 22 chr11 37678452 37678541 -113105012 + MIR3 SINE MIR 121 207 -1 224 98 0 24 chr11 37680593 37680634 -113102919 + (TTTC)n Simple_repeat Simple_repeat 3 42 0 703 246 113 5 chr11 37682025 37682228 -113101325 - MIR SINE MIR -33 229 5 918 117 11 15 chr11 37682272 37682422 -113101131 + THE1C LTR MaLR 1 121 -254 798 265 55 8 chr11 37682683 37682921 -113100632 + MIR SINE MIR 13 261 -1 439 123 15 0 chr11 37683435 37683500 -113100053 - THE1C LTR MaLR -254 121 56 2049 169 50 92 chr11 37683630 37684216 -113099337 + MER34B LTR ERV1 5 565 0 497 271 136 5 chr11 37684986 37685200 -113098353 + MIR SINE MIR 18 259 -3 316 213 82 41 chr11 37686295 37686417 -113097136 + MIR SINE MIR 75 201 -61 1130 186 151 14 chr11 37686673 37686958 -113096595 + MLT1F LTR MaLR 180 501 -41 1647 190 30 51 chr11 37686958 37687180 -113096373 - MLT1A1 LTR MaLR 0 365 153 1905 184 46 3 chr11 37687180 37687528 -113096025 + MLT1A1 LTR MaLR 3 365 0 1647 190 30 51 chr11 37687528 37687678 -113095875 - MLT1A1 LTR MaLR -212 153 1 577 260 26 0 chr11 37687868 37688022 -113095531 - MLT1L LTR MaLR -5 610 453 25 0 0 0 chr11 37688353 37688378 -113095175 + AT_rich Low_complexity Low_complexity 1 25 0 872 284 125 37 chr11 37688454 37688862 -113094691 - L2 LINE L2 -4 3309 2866 2874 320 53 38 chr11 37689182 37691088 -113092465 + HERVL LTR ERVL 2253 4201 -1284 234 284 0 15 chr11 37691137 37691204 -113092349 - MER5A DNA MER1_type -83 106 41 320 282 29 23 chr11 37692401 37692575 -113090978 + CT-rich Low_complexity Low_complexity 1 175 0 2258 125 0 0 chr11 37693080 37693392 -113090161 - AluSx SINE Alu 0 312 1 346 239 64 18 chr11 37693569 37693678 -113089875 + MIR3 SINE MIR 61 174 -34 427 284 77 64 chr11 37694921 37695248 -113088305 - L2 LINE L2 -106 3166 2836 723 300 65 14 chr11 37695301 37695578 -113087975 + MLT1F1 LTR MaLR 2 292 -250 2156 190 35 76 chr11 37695593 37696173 -113087380 - MER34B LTR ERV1 -5 560 5 1113 154 65 19 chr11 37696177 37696391 -113087162 + MLT1F1 LTR MaLR 343 566 -1 376 184 0 69 chr11 37696412 37696499 -113087054 + MIR3 SINE MIR 76 156 -52 432 221 107 27 chr11 37696631 37696780 -113086773 - MIR SINE MIR 0 262 102 266 292 29 36 chr11 37697807 37697944 -113085609 + MIR SINE MIR 96 231 -31 593 264 99 33 chr11 37697999 37698211 -113085342 + MIR SINE MIR 37 262 0 28 0 0 0 chr11 37698695 37698723 -113084830 + AT_rich Low_complexity Low_complexity 1 28 0 4961 89 12 6 chr11 37698733 37699396 -113084157 - PABL_B LTR ERV1 0 667 1 593 185 37 0 chr11 37699418 37699526 -113084027 - MER44D DNA MER2_type 0 605 494 195 204 0 0 chr11 37699527 37699571 -113083982 + (CATA)n Simple_repeat Simple_repeat 2 45 0 1121 94 133 109 chr11 37699571 37699806 -113083747 - MER44D DNA MER2_type -1957 534 306 2249 106 38 46 chr11 37699806 37700173 -113083380 + THE1B LTR MaLR 1 364 0 1121 94 133 109 chr11 37700173 37700193 -113083360 - MER44D DNA MER2_type -2185 306 3 2325 105 0 3 chr11 37700303 37700609 -113082944 - AluSg SINE Alu -5 305 1 25 0 0 0 chr11 37701552 37701577 -113081976 + AT_rich Low_complexity Low_complexity 1 25 0 621 240 29 6 chr11 37702529 37702700 -113080853 + MER5B DNA MER1_type 4 178 0 258 32 0 0 chr11 37703252 37703283 -113080270 + (TTG)n Simple_repeat Simple_repeat 2 32 0 6520 88 6 16 chr11 37703380 37704452 -113079101 - L1PA10 LINE L1 -5 6163 5095 520 281 65 19 chr11 37704479 37704863 -113078690 + L2 LINE L2 2595 3059 -213 412 75 0 170 chr11 37705767 37705861 -113077692 - MADE1 DNA Mariner 0 80 3 210 345 55 9 chr11 37705874 37705984 -113077569 + MIR SINE MIR 29 143 -119 457 299 72 12 chr11 37706390 37706557 -113076996 + MER91A DNA MER1_type 1 177 -19 194 167 62 0 chr11 37706565 37706613 -113076940 + L2 LINE L2 3214 3264 -8 454 301 27 7 chr11 37706700 37706846 -113076707 + MIR SINE MIR 2 150 -112 403 209 29 19 chr11 37707027 37707132 -113076421 - MIR SINE MIR -12 250 145 2806 123 16 23 chr11 37708572 37708960 -113074593 + MSTA LTR MaLR 2 388 -40 2899 16 0 0 chr11 37708960 37709273 -113074280 - AluYb8 SINE Alu -5 313 1 2806 123 16 23 chr11 37709273 37709314 -113074239 + MSTA LTR MaLR 388 428 0 243 0 0 0 chr11 37709912 37709939 -113073614 + (TC)n Simple_repeat Simple_repeat 1 27 0 719 253 176 41 chr11 37710589 37710953 -113072600 + MLT1J2 LTR MaLR 34 450 0 988 258 83 67 chr11 37711114 37711634 -113071919 + L1MC4a LINE L1 5297 5555 -745 2382 94 0 0 chr11 37712163 37712470 -113071083 + AluSg SINE Alu 1 307 -3 978 293 68 4 chr11 37712627 37713238 -113070315 - MER115 DNA AcHobo -5 688 1 356 274 0 11 chr11 37715088 37715183 -113068370 - L2 LINE L2 -4 3309 3216 1270 109 0 0 chr11 37715186 37715351 -113068202 + AluSq SINE Alu 9 173 -140 1474 263 150 44 chr11 37715351 37716294 -113067259 - L2 LINE L2 -105 3208 2163 515 203 31 47 chr11 37716295 37716423 -113067130 + MER106B DNA MER1_type 934 1059 0 700 288 9 35 chr11 37716576 37716802 -113066751 - MIR SINE MIR -15 247 28 232 214 18 0 chr11 37716859 37716915 -113066638 + (TA)n Simple_repeat Simple_repeat 1 57 0 333 0 0 0 chr11 37716917 37716954 -113066599 + (CA)n Simple_repeat Simple_repeat 2 38 0 325 290 67 36 chr11 37718811 37719004 -113064549 + MIR SINE MIR 8 206 -56 30 59 0 0 chr11 37719437 37719488 -113064065 + AT_rich Low_complexity Low_complexity 1 51 0 2195 126 0 3 chr11 37720486 37720795 -113062758 + AluJb SINE Alu 1 308 -4 404 238 0 0 chr11 37721208 37721288 -113062265 + L1M1 LINE L1 418 497 -7068 378 277 15 22 chr11 37721343 37721480 -113062073 + L2 LINE L2 3176 3311 -2 345 346 26 26 chr11 37721596 37721752 -113061801 + L2 LINE L2 3115 3270 -2 1479 165 29 25 chr11 37722215 37722494 -113061059 + MER7A DNA MER2_type 1 278 -68 312 336 36 7 chr11 37722598 37722735 -113060818 - MER5A DNA MER1_type -5 184 44 235 194 45 60 chr11 37722745 37722812 -113060741 - MER34 LTR ERV1 -4 538 473 8993 162 25 55 chr11 37722815 37724916 -113058637 + L1MA3 LINE L1 16 2759 -4806 1340 124 29 37 chr11 37724910 37725152 -113058401 + L1MA3 LINE L1 5623 5862 -443 * 1429 122 9 31 chr11 37725153 37725375 -113058178 - THE1B LTR MaLR -1 363 147 1515 145 28 4 chr11 37725375 37725623 -113057930 + L1MA3 LINE L1 2753 3006 -4559 * 6015 139 14 17 chr11 37725619 37726320 -113057233 + L1MA3 LINE L1 6584 7282 -442 2279 129 19 25 chr11 37726320 37726685 -113056868 - THE1B LTR MaLR -1 363 1 6015 139 14 17 chr11 37726685 37727094 -113056459 + L1MA3 LINE L1 7282 7691 -33 690 179 0 0 chr11 37727564 37727687 -113055866 - MER97a DNA MER1_type? -721 173 51 428 221 33 41 chr11 37727751 37727873 -113055680 + L2 LINE L2 3151 3271 -1 645 224 86 0 chr11 37728136 37728310 -113055243 + MER33 DNA MER1_type 30 218 -106 2048 180 9 35 chr11 37728660 37729093 -113054460 - L1MC3 LINE L1 -1 7784 7363 502 103 10 72 chr11 37729094 37729191 -113054362 + MLT1A1 LTR MaLR 2 92 -273 3924 125 35 22 chr11 37729198 37729822 -113053731 - MER39B LTR ERV1 -21 632 1 1312 201 19 22 chr11 37729822 37730089 -113053464 + MLT1A1 LTR MaLR 92 357 -8 1338 164 33 21 chr11 37730304 37730578 -113052975 - L1MC3 LINE L1 -415 7580 7129 184 349 47 12 chr11 37730761 37730847 -113052706 + MIR3 SINE MIR 10 98 -110 322 230 44 62 chr11 37730877 37730990 -113052563 + MIR SINE MIR 33 143 -65 1520 154 47 50 chr11 37731513 37731811 -113051742 - MLT1B LTR MaLR -91 299 3 4333 154 34 73 chr11 37731817 37731883 -113051670 + Charlie1 DNA MER1_type 1812 1879 -882 2153 131 0 3 chr11 37731883 37732174 -113051379 + AluSx SINE Alu 1 290 -22 4333 154 34 73 chr11 37732174 37732620 -113050933 + Charlie1 DNA MER1_type 1879 2341 -420 1686 174 7 14 chr11 37732620 37732901 -113050652 + AluJb SINE Alu 7 285 -27 4333 154 34 73 chr11 37732901 37733340 -113050213 + Charlie1 DNA MER1_type 2341 2727 -34 1629 186 10 7 chr11 37733340 37733646 -113049907 + AluJb SINE Alu 1 307 -5 4333 154 34 73 chr11 37733646 37733680 -113049873 + Charlie1 DNA MER1_type 2727 2761 0 236 305 47 47 chr11 37733680 37733808 -113049745 - L2 LINE L2 -4 3309 3182 7837 22 1 0 chr11 37733813 37734936 -113048617 + L1PA3 LINE L1 5047 6170 0 1330 261 70 60 chr11 37735814 37735976 -113047577 + MLT1E LTR MaLR 1 160 -433 1590 213 63 17 chr11 37735976 37736323 -113047230 + MLT1A1 LTR MaLR 3 365 0 1330 261 70 60 chr11 37736323 37736747 -113046806 + MLT1E LTR MaLR 160 593 0 474 329 60 3 chr11 37737414 37737837 -113045716 - LTR16B LTR ERVL -2 462 1 2068 107 25 4 chr11 37738091 37738371 -113045182 - AluSg SINE Alu -24 286 1 305 306 35 0 chr11 37739077 37739162 -113044391 + MIR SINE MIR 30 117 -91 738 275 130 43 chr11 37739235 37739697 -113043856 - MLT1J LTR MaLR -2 509 8 418 170 10 60 chr11 37741672 37741772 -113041781 + MER5B DNA MER1_type 1 95 -83 2368 148 89 9 chr11 37742953 37743391 -113040162 - L1MC1 LINE L1 -16 6317 5845 1943 168 0 3 chr11 37743541 37743850 -113039703 + AluJb SINE Alu 1 308 -4 1678 151 56 122 chr11 37743955 37744398 -113039155 + MLT2D LTR ERVL 1 414 0 468 0 0 0 chr11 37746702 37746754 -113036799 + (TCTA)n Simple_repeat Simple_repeat 2 53 0 385 271 154 19 chr11 37746868 37747082 -113036471 - MIR SINE MIR -18 244 2 185 108 27 0 chr11 37747251 37747288 -113036265 + (AACTG)n Simple_repeat Simple_repeat 4 41 0 2256 110 0 22 chr11 37748146 37748463 -113035090 + AluSg SINE Alu 1 310 0 624 85 25 0 chr11 37748463 37748581 -113034972 + (TA)n Simple_repeat Simple_repeat 1 121 0 543 258 60 87 chr11 37748646 37748980 -113034573 + MLT1H LTR MaLR 140 464 -85 2022 178 61 57 chr11 37749182 37749655 -113033898 - MLT1D LTR MaLR -1 504 30 1863 162 7 7 chr11 37749864 37750160 -113033393 - AluJb SINE Alu -14 298 3 7219 195 7 8 chr11 37750768 37752222 -113031331 - L1P5 LINE L1 -1244 4902 3451 3849 117 32 17 chr11 37752221 37752832 -113030721 + L1P5 LINE L1 4912 5512 -639 * 1465 134 0 0 chr11 37752832 37753041 -113030512 - AluSq SINE Alu -5 308 100 3849 117 32 17 chr11 37753041 37753293 -113030260 + L1P5 LINE L1 5512 5796 -355 294 73 0 0 chr11 37753293 37753334 -113030219 + (TG)n Simple_repeat Simple_repeat 2 42 0 3849 117 32 17 chr11 37753334 37753357 -113030196 + L1P5 LINE L1 5796 5817 -334 779 271 78 37 chr11 37753690 37754174 -113029379 + L2 LINE L2 2804 3307 -6 533 162 86 19 chr11 37754209 37754314 -113029239 + MER81 DNA DNA 3 114 0 236 246 0 0 chr11 37754412 37754469 -113029084 + L2 LINE L2 3257 3313 0 452 268 0 57 chr11 37755080 37755161 -113028392 + MIR3 SINE MIR 5 74 -134 1342 209 84 16 chr11 37755161 37755482 -113028071 - MER2 DNA MER2_type 0 344 2 452 268 0 57 chr11 37755482 37755557 -113027996 + MIR3 SINE MIR 74 152 -56 1982 150 0 3 chr11 37756389 37756683 -113026870 + AluJb SINE Alu 1 293 -19 418 231 94 147 chr11 37756920 37757240 -113026313 - MLT1J LTR MaLR -4 507 205 364 300 127 17 chr11 37757363 37757600 -113025953 - MLT1L LTR MaLR -113 502 240 226 211 29 115 chr11 37757638 37757742 -113025811 - MLT1L LTR MaLR -482 133 39 311 294 126 19 chr11 37758810 37759093 -113024460 + MLT1L LTR MaLR 168 497 -112 2369 63 0 13 chr11 37759369 37759670 -113023883 + AluY SINE Alu 1 297 -14 392 256 69 12 chr11 37760955 37761115 -113022438 + MIR SINE MIR 14 182 -80 192 200 0 0 chr11 37761615 37761655 -113021898 + (CA)n Simple_repeat Simple_repeat 1 40 0 2077 112 7 3 chr11 37762428 37762715 -113020838 + AluJo SINE Alu 3 290 -22 338 289 21 70 chr11 37762982 37763124 -113020429 - MIR SINE MIR -10 252 118 1608 164 0 23 chr11 37763589 37763851 -113019702 + AluSx SINE Alu 43 298 -14 180 347 21 0 chr11 37764063 37764158 -113019395 + MIR SINE MIR 34 130 -78 243 189 0 0 chr11 37765654 37765707 -113017846 + (CAT)n Simple_repeat Simple_repeat 1 53 0 225 301 0 60 chr11 37766813 37766896 -113016657 - MIR3 SINE MIR -50 158 81 230 311 66 33 chr11 37766905 37767056 -113016497 + L2 LINE L2 2939 3094 -178 475 264 176 0 chr11 37767107 37767289 -113016264 - MIR SINE MIR -46 216 3 719 252 145 12 chr11 37767379 37767607 -113015946 - MLT1L LTR MaLR 0 615 266 502 257 45 17 chr11 37767621 37767800 -113015753 - MLT1L LTR MaLR -297 318 135 1540 201 5 69 chr11 37768557 37768618 -113014935 - MLT1A1 LTR MaLR -11 354 291 1732 139 0 74 chr11 37768618 37768928 -113014625 + AluSx SINE Alu 4 290 -22 542 28 14 0 chr11 37768928 37769000 -113014553 + (TAGA)n Simple_repeat Simple_repeat 4 76 0 1540 201 5 69 chr11 37769000 37769025 -113014528 - MLT1A1 LTR MaLR -73 292 267 201 39 0 0 chr11 37769025 37769051 -113014502 + (GA)n Simple_repeat Simple_repeat 2 27 0 1540 201 5 69 chr11 37769051 37769340 -113014213 - MLT1A1 LTR MaLR -98 267 1 191 269 13 13 chr11 37769914 37769992 -113013561 - MIR SINE MIR -38 224 147 618 254 21 0 chr11 37770044 37770186 -113013367 - MIR SINE MIR -105 157 13 386 299 130 0 chr11 37770326 37770503 -113013050 + MIR SINE MIR 53 252 -10 278 299 20 27 chr11 37770527 37770674 -113012879 - MIR SINE MIR -64 198 53 285 248 129 10 chr11 37771581 37771682 -113011871 - L2 LINE L2 -4 3309 3197 205 282 64 0 chr11 37771984 37772062 -113011491 - L2 LINE L2 -19 3294 3212 357 314 0 0 chr11 37772967 37773072 -113010481 + MIR SINE MIR 39 143 -65 219 134 0 60 chr11 37773813 37773880 -113009673 + (AGGGGG)n Simple_repeat Simple_repeat 5 67 0 31 26 0 0 chr11 37774296 37774334 -113009219 + GC_rich Low_complexity Low_complexity 1 38 0 22 35 0 0 chr11 37774412 37774441 -113009112 + GC_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr11 37776263 37776292 -113007261 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr11 37776373 37776394 -113007159 + AT_rich Low_complexity Low_complexity 1 21 0 233 209 330 0 chr11 37778219 37778310 -113005243 + MIR SINE MIR 88 208 -54 183 42 0 0 chr11 37778373 37778397 -113005156 + (A)n Simple_repeat Simple_repeat 1 24 0 24 0 0 0 chr11 37778655 37778679 -113004874 + AT_rich Low_complexity Low_complexity 1 24 0 301 190 38 25 chr11 37778968 37779047 -113004506 + MIR SINE MIR 161 240 -22 277 282 154 0 chr11 37779669 37779779 -113003774 + MIR3 SINE MIR 32 158 -50 608 274 28 32 chr11 37779787 37780035 -113003518 + MER112 DNA MER1_type 8 254 -6 201 191 0 0 chr11 37780035 37780077 -113003476 + MIR3 SINE MIR 153 194 -14 23 0 0 0 chr11 37780661 37780684 -113002869 + AT_rich Low_complexity Low_complexity 1 23 0 1309 177 28 54 chr11 37781052 37781084 -113002469 - L1MB4 LINE L1 0 6180 6149 2324 99 0 3 chr11 37781084 37781386 -113002167 - AluSx SINE Alu -11 301 1 1309 177 28 54 chr11 37781386 37781670 -113001883 - L1MB4 LINE L1 -31 6149 5872 282 280 13 0 chr11 37781978 37782053 -113001500 - L2 LINE L2 -43 3229 3154 233 292 58 50 chr11 37782602 37782722 -113000831 - MIR SINE MIR -122 140 20 2285 85 3 3 chr11 37782766 37783060 -113000493 - AluY SINE Alu -17 294 1 22 35 0 0 chr11 37783070 37783099 -113000454 + AT_rich Low_complexity Low_complexity 1 29 0 767 189 0 0 chr11 37783155 37783282 -113000271 - FLAM_C SINE Alu -10 133 7 550 269 70 76 chr11 37783334 37783676 -112999877 - L1MEd LINE L1 -4885 1234 895 575 194 26 65 chr11 37783855 37784010 -112999543 - MER53 DNA DNA -13 176 28 1512 242 176 35 chr11 37784069 37784693 -112998860 - L1MEd LINE L1 -5406 713 2 353 354 93 59 chr11 37786101 37786542 -112997011 - L2 LINE L2 -2 3270 2815 789 228 99 26 chr11 37786613 37786846 -112996707 + MIR SINE MIR 10 259 -3 2210 137 103 0 chr11 37786935 37787323 -112996230 + MSTA LTR MaLR 1 428 0 332 185 46 15 chr11 37787450 37787515 -112996038 + AluS SINE Alu 1 67 -236 1588 177 45 24 chr11 37788441 37788729 -112994824 - AluJb SINE Alu -18 294 1 2235 111 3 3 chr11 37788759 37789056 -112994497 + AluSg SINE Alu 1 297 -13 289 232 0 14 chr11 37789201 37789270 -112994283 + LTR67 LTR ERVL 486 553 -4 1007 233 9 9 chr11 37789517 37789727 -112993826 + MER63A DNA MER1_type 1 210 0 427 284 41 78 chr11 37789776 37789925 -112993628 - MIR SINE MIR 0 262 126 2574 71 0 0 chr11 37789925 37790235 -112993318 + AluY SINE Alu 1 310 -1 427 284 41 78 chr11 37790235 37790356 -112993197 - MIR SINE MIR -136 126 2 2234 108 0 7 chr11 37790582 37790879 -112992674 - AluSg SINE Alu -10 300 6 382 285 182 6 chr11 37790890 37791055 -112992498 - MIR SINE MIR 0 262 69 337 289 83 8 chr11 37791082 37791203 -112992350 - MIR SINE MIR -116 146 17 3366 151 22 3 chr11 37792203 37792787 -112990766 + L1MB3 LINE L1 5589 6183 0 281 263 82 0 chr11 37792936 37793040 -112990513 - MIR SINE MIR -62 146 52 851 308 20 0 chr11 37793659 37793909 -112989644 + MIR SINE MIR 8 262 0 22 0 0 0 chr11 37794767 37794789 -112988764 + AT_rich Low_complexity Low_complexity 1 22 0 194 184 0 0 chr11 37795083 37795121 -112988432 - L2 LINE L2 0 3313 3276 2299 94 10 0 chr11 37795778 37796066 -112987487 + AluSg SINE Alu 1 291 -19 349 234 36 63 chr11 37796153 37796264 -112987289 + L1ME LINE L1 5627 5734 -436 1857 166 10 7 chr11 37796363 37796664 -112986889 - AluJo SINE Alu -9 303 2 264 250 0 14 chr11 37796686 37796758 -112986795 + LTR33A LTR ERVL 446 516 -7 207 0 0 0 chr11 37796951 37796974 -112986579 + (TC)n Simple_repeat Simple_repeat 1 23 0 299 336 25 0 chr11 37797224 37797346 -112986207 + L2 LINE L2 3183 3307 -6 604 263 64 6 chr11 37797440 37797611 -112985942 - MIR SINE MIR -3 259 79 752 279 106 0 chr11 37798053 37798279 -112985274 + MIR SINE MIR 2 251 -11 369 277 68 16 chr11 37799217 37799399 -112984154 + MIR SINE MIR 44 234 -28 2094 104 11 7 chr11 37799527 37799806 -112983747 - AluSx SINE Alu -31 281 2 712 202 13 3 chr11 37799835 37800069 -112983484 + AluJo SINE Alu 1 303 -9 366 216 196 0 chr11 37800178 37800326 -112983227 + MER104 DNA MER2_type 4 180 0 25 51 0 0 chr11 37800487 37800526 -112983027 + AT_rich Low_complexity Low_complexity 1 39 0 349 338 41 0 chr11 37800526 37800671 -112982882 + MIR SINE MIR 57 207 -55 1917 166 14 30 chr11 37800878 37801245 -112982308 - MLT1A1 LTR MaLR -4 361 1 1515 213 32 47 chr11 37801533 37801951 -112981602 - MLT1D LTR MaLR -105 400 1 700 259 15 34 chr11 37801969 37802232 -112981321 - MIR SINE MIR 0 262 5 564 284 54 124 chr11 37802372 37802911 -112980642 - MLT1K LTR MaLR -4 584 84 303 86 52 69 chr11 37802957 37803004 -112980549 - MLT1L LTR MaLR -75 540 495 1220 152 65 9 chr11 37803004 37803221 -112980332 - MSTB1 LTR MaLR 0 432 204 312 172 0 0 chr11 37803223 37803281 -112980272 + GA-rich Low_complexity Low_complexity 1 58 0 793 186 45 57 chr11 37803281 37803539 -112980014 - MSTB2 LTR MaLR -201 231 1 786 247 136 38 chr11 37803614 37803930 -112979623 - MLT1L LTR MaLR -223 392 46 647 289 117 18 chr11 37804199 37804472 -112979081 + MLT1H LTR MaLR 1 300 -249 638 273 45 23 chr11 37804676 37804896 -112978657 + MLT1H LTR MaLR 331 555 0 423 312 43 14 chr11 37804896 37805034 -112978519 - MIR3 SINE MIR -42 166 25 1822 157 16 35 chr11 37805056 37805374 -112978179 + AluJo SINE Alu 1 312 0 694 276 46 42 chr11 37805448 37805709 -112977844 - MIR SINE MIR 0 262 1 221 221 15 44 chr11 37806119 37806187 -112977366 + GA-rich Low_complexity Low_complexity 4 69 0 570 288 8 0 chr11 37806272 37806404 -112977149 - MER94 DNA DNA 0 134 2 242 202 64 85 chr11 37806455 37806549 -112977004 - L2 LINE L2 -42 3230 3139 210 305 29 9 chr11 37806603 37806708 -112976845 - L2 LINE L2 -270 3002 2896 23 0 0 0 chr11 37806839 37806862 -112976691 + AT_rich Low_complexity Low_complexity 1 23 0 222 37 0 0 chr11 37807124 37807151 -112976402 + (GA)n Simple_repeat Simple_repeat 2 28 0 2128 113 3 49 chr11 37807334 37807661 -112975892 - AluSx SINE Alu 0 312 1 47 19 0 0 chr11 37807929 37807983 -112975570 + AT_rich Low_complexity Low_complexity 1 54 0 267 306 98 29 chr11 37808177 37808350 -112975203 - L2 LINE L2 -456 2858 2674 2228 89 3 7 chr11 37808484 37808805 -112974748 - AluSc SINE Alu 0 320 1 387 293 131 20 chr11 37809252 37809604 -112973949 + L1ME LINE L1 4942 5332 -814 322 229 101 0 chr11 37809644 37809753 -112973800 + L1ME LINE L1 5395 5514 -648 27 29 0 0 chr11 37809982 37810016 -112973537 + AT_rich Low_complexity Low_complexity 1 34 0 259 310 0 0 chr11 37810111 37810182 -112973371 - tRNA-Thr-ACA tRNA tRNA -3 73 3 308 230 58 11 chr11 37811386 37811473 -112972080 + MIR SINE MIR 45 135 -73 807 114 98 15 chr11 37811743 37811875 -112971678 + MER39B LTR ERV1 1 143 -510 1267 82 6 6 chr11 37811875 37812046 -112971507 - AluSp SINE Alu -17 296 126 3004 148 20 26 chr11 37812046 37812306 -112971247 + MER39B LTR ERV1 151 408 -245 4015 101 20 0 chr11 37812306 37812849 -112970704 - MER41A LTR ERV1 0 554 1 3004 148 20 26 chr11 37812849 37813094 -112970459 + MER39B LTR ERV1 408 653 0 326 267 11 0 chr11 37813148 37813238 -112970315 + MLT-int LTR MaLR 32 122 -1613 2131 88 4 0 chr11 37813246 37813518 -112970035 + AluSp SINE Alu 2 274 -39 1072 269 26 3 chr11 37813536 37813845 -112969708 + MLT1F-int LTR MaLR 291 606 -765 315 293 83 38 chr11 37814061 37814218 -112969335 + MLT1F-int LTR MaLR 715 878 -493 2382 90 0 7 chr11 37814516 37814816 -112968737 - AluSx SINE Alu -14 298 1 504 264 54 20 chr11 37814929 37815077 -112968476 + MLT1F-int LTR MaLR 1219 1371 0 2270 218 81 8 chr11 37815077 37815582 -112967971 + MLT1F LTR MaLR 1 542 0 2074 140 0 0 chr11 37815738 37816031 -112967522 + AluSx SINE Alu 1 293 -19 1944 131 19 22 chr11 37816239 37816552 -112967001 + AluJb SINE Alu 1 312 0 367 272 33 72 chr11 37817352 37817532 -112966021 - MIR SINE MIR -72 190 18 25 0 0 0 chr11 37818275 37818300 -112965253 + GC_rich Low_complexity Low_complexity 1 25 0 29 60 0 0 chr11 37818333 37818383 -112965170 + GC_rich Low_complexity Low_complexity 1 50 0 505 296 11 11 chr11 37818847 37819097 -112964456 + GA-rich Low_complexity Low_complexity 1 250 0 193 205 0 0 chr11 37819926 37819965 -112963588 + L2 LINE L2 3275 3313 0 1883 260 86 30 chr11 37820292 37821107 -112962446 - L1ME3A LINE L1 -89 6056 5288 1986 123 40 17 chr11 37821107 37821407 -112962146 - AluSx SINE Alu -5 307 1 1883 260 86 30 chr11 37821407 37822129 -112961424 - L1ME3A LINE L1 -857 5288 4367 849 199 32 0 chr11 37822137 37822293 -112961260 + FRAM SINE Alu 1 161 -15 847 267 76 29 chr11 37822320 37822796 -112960757 - L1ME3A LINE L1 -1808 4321 3824 1519 182 7 18 chr11 37822897 37823172 -112960381 - AluJo SINE Alu -20 292 21 509 269 48 70 chr11 37823311 37823623 -112959930 - L1ME3A LINE L1 -2323 3806 3502 4078 92 5 4 chr11 37823714 37824267 -112959286 - L1PA11 LINE L1 0 6174 5621 459 292 0 23 chr11 37824286 37824457 -112959096 - L1ME3A LINE L1 -2646 3483 3317 310 259 62 45 chr11 37824676 37824788 -112958765 - L1ME3A LINE L1 -5478 641 528 2076 126 0 11 chr11 37824976 37825298 -112958255 - AluSq SINE Alu 0 319 1 2071 136 3 3 chr11 37825320 37825340 -112958213 - AluSx SINE Alu 0 312 293 190 0 0 0 chr11 37825340 37825361 -112958192 + (TTG)n Simple_repeat Simple_repeat 1 180 0 2071 136 3 3 chr11 37825361 37825642 -112957911 - AluSx SINE Alu -18 294 1 400 225 45 9 chr11 37825805 37825916 -112957637 - L1MD3 LINE L1 -155 7840 7726 * 661 185 0 8 chr11 37825907 37826037 -112957516 - L1MC3 LINE L1 -314 7471 7343 244 202 164 39 chr11 37826037 37826141 -112957412 - L1MC3 LINE L1 -1902 5906 5790 495 272 139 11 chr11 37826585 37826765 -112956788 - L2 LINE L2 0 3313 3111 490 280 78 16 chr11 37826795 37826988 -112956565 + MIR SINE MIR 58 262 0 511 226 107 79 chr11 37827670 37827922 -112955631 + MER112 DNA MER1_type 2 260 0 437 278 147 28 chr11 37828575 37828827 -112954726 - L2 LINE L2 -62 3251 2970 281 310 0 0 chr11 37829722 37829809 -112953744 + (TG)n Simple_repeat Simple_repeat 2 88 0 246 267 155 26 chr11 37830204 37830320 -112953233 - L2 LINE L2 -5 3308 3178 332 360 70 0 chr11 37830578 37830692 -112952861 + L2 LINE L2 3122 3243 -29 919 252 78 87 chr11 37830839 37831096 -112952457 - MLT1J LTR MaLR -37 474 221 1889 99 0 0 chr11 37831096 37831339 -112952214 - AluSc SINE Alu -66 243 1 919 252 78 87 chr11 37831339 37831554 -112951999 - MLT1J LTR MaLR -290 221 6 738 299 14 0 chr11 37831571 37831785 -112951768 + MIR SINE MIR 46 262 0 577 274 130 9 chr11 37832521 37832751 -112950802 - MIR SINE MIR -3 259 2 39 22 0 0 chr11 37832901 37832947 -112950606 + AT_rich Low_complexity Low_complexity 1 46 0 282 269 77 0 chr11 37833031 37833135 -112950418 - MIR SINE MIR 0 262 151 661 295 183 38 chr11 37833192 37833902 -112949651 - L2 LINE L2 0 3313 2497 192 68 45 23 chr11 37834099 37834143 -112949410 + C-rich Low_complexity Low_complexity 1 45 0 1656 160 48 0 chr11 37834151 37834419 -112949134 - AluSx SINE Alu -31 281 1 970 264 32 38 chr11 37835016 37835331 -112948222 - MER102a DNA MER1_type 0 330 18 611 257 7 7 chr11 37835348 37835488 -112948065 - MIR3 SINE MIR -48 160 21 414 284 40 44 chr11 37835939 37836164 -112947389 - L1MC4a LINE L1 -1902 5906 5683 227 277 72 12 chr11 37836229 37836312 -112947241 - L1MC4a LINE L1 -601 5573 5486 217 298 123 18 chr11 37836573 37836687 -112946866 + MIR SINE MIR 53 178 -84 1102 84 0 0 chr11 37837472 37837614 -112945939 - AluSg/x SINE Alu -6 304 163 567 285 62 60 chr11 37837637 37838006 -112945547 + MER115 DNA AcHobo 133 502 -191 21 36 0 0 chr11 37839256 37839284 -112944269 + AT_rich Low_complexity Low_complexity 1 28 0 255 333 37 0 chr11 37839349 37839430 -112944123 - L2 LINE L2 -52 3220 3137 933 230 59 14 chr11 37839464 37839664 -112943889 - MIR SINE MIR -26 236 24 799 191 181 35 chr11 37839664 37839946 -112943607 + MER33 DNA MER1_type 1 323 -1 933 230 59 14 chr11 37839946 37839967 -112943586 - MIR SINE MIR -238 24 5 505 314 101 14 chr11 37839988 37840195 -112943358 - MIR SINE MIR -13 249 25 539 179 0 0 chr11 37840217 37840301 -112943252 - FRAM/FAM SINE Alu -95 81 1 22 35 0 0 chr11 37840368 37840397 -112943156 + AT_rich Low_complexity Low_complexity 1 29 0 2322 70 0 0 chr11 37841190 37841476 -112942077 - AluSg SINE Alu -19 291 6 228 35 0 0 chr11 37841876 37841905 -112941648 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 206 316 0 0 chr11 37841920 37841977 -112941576 - MIR SINE MIR -7 255 199 817 121 50 111 chr11 37841977 37842066 -112941487 - L1MB3 LINE L1 -8 6175 6103 2183 129 0 3 chr11 37842066 37842377 -112941176 - AluSx SINE Alu -2 310 1 817 121 50 111 chr11 37842377 37842485 -112941068 - L1MB3 LINE L1 -80 6103 5990 355 315 148 6 chr11 37842494 37842656 -112940897 - MIR SINE MIR -74 188 4 258 200 207 7 chr11 37843900 37844035 -112939518 - L1ME4a LINE L1 -1 6120 5959 911 215 16 0 chr11 37844209 37844395 -112939158 - MER5A DNA MER1_type 0 189 1 304 292 208 25 chr11 37846244 37846446 -112937107 - MIR SINE MIR -18 244 6 2001 124 39 28 chr11 37846933 37847158 -112936395 - MER47A DNA MER2_type -1957 366 134 2313 108 0 3 chr11 37847158 37847465 -112936088 - AluY SINE Alu -5 306 1 2001 124 39 28 chr11 37847465 37847601 -112935952 - MER47A DNA MER2_type -2189 134 1 193 359 108 24 chr11 37847683 37847850 -112935703 - MER5A DNA MER1_type 0 189 9 1047 174 108 0 chr11 37847921 37848133 -112935420 - MER46A DNA MER2_type -1 235 1 2150 87 204 22 chr11 37848143 37848163 -112935390 - MER57B LTR ERV1 0 434 419 2477 79 3 0 chr11 37848163 37848468 -112935085 + AluY SINE Alu 1 306 -5 2150 87 204 22 chr11 37848468 37848814 -112934739 - MER57B LTR ERV1 -15 419 1 1409 88 118 25 chr11 37848814 37849052 -112934501 - MER57B-int LTR ERV1 0 7537 7278 703 115 25 8 chr11 37849055 37849177 -112934376 - LTR54B LTR ERV1 -370 128 5 16069 102 59 42 chr11 37849177 37849308 -112934245 - MER57B-int LTR ERV1 -387 7150 7023 185 258 0 32 chr11 37849308 37849370 -112934183 + L3 LINE CR1 1065 1124 -453 16069 102 59 42 chr11 37849370 37851657 -112931896 - MER57B-int LTR ERV1 -514 7023 4776 2238 74 7 20 chr11 37851657 37851954 -112931599 - AluY SINE Alu -10 301 9 16069 102 59 42 chr11 37851954 37852087 -112931466 - MER57B-int LTR ERV1 -2761 4776 4647 2177 107 3 7 chr11 37852087 37852378 -112931175 + AluSc SINE Alu 1 290 -19 201 39 0 0 chr11 37852382 37852408 -112931145 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 16069 102 59 42 chr11 37852408 37852587 -112930966 - MER57B-int LTR ERV1 -2892 4645 4305 3144 37 3 0 chr11 37852587 37852969 -112930584 - L1PA4 LINE L1 -3 6152 5770 5979 24 0 7 chr11 37852969 37853679 -112929874 - L1PA4 LINE L1 0 6155 5451 5580 26 10 5 chr11 37853679 37854789 -112928764 - L1PA4 LINE L1 -374 5781 4668 * 6991 39 7 0 chr11 37854781 37855674 -112927879 + L1PA4 LINE L1 3798 4696 -1450 3589 163 72 57 chr11 37855674 37856715 -112926838 - MER57B-int LTR ERV1 -3233 4304 3248 747 103 27 55 chr11 37856702 37856848 -112926705 - MER57B-int LTR ERV1 -4615 2922 2781 * 567 157 61 26 chr11 37856844 37856959 -112926594 - MER57B-int LTR ERV1 -4908 2629 2511 * 3472 146 40 8 chr11 37856961 37857741 -112925812 - MER57B-int LTR ERV1 -4231 3585 648 42305 37 3 2 chr11 37858299 37864444 -112919109 + L1PA3 LINE L1 13 6154 -1 1181 94 0 0 chr11 37864517 37864677 -112918876 - MER57B-int LTR ERV1 -6585 952 793 * 4058 145 24 1 chr11 37864675 37865336 -112918217 - MER57B-int LTR ERV1 -6860 677 2 2991 108 9 0 chr11 37865337 37865764 -112917789 - MER57B LTR ERV1 0 434 4 3048 128 68 18 chr11 37865892 37866438 -112917115 - MER34C LTR ERV1 -12 573 1 1512 161 17 10 chr11 37866446 37866744 -112916809 + L1MB8 LINE L1 5877 6176 -2 441 219 30 112 chr11 37866918 37867087 -112916466 + MIR SINE MIR 64 218 -44 1153 168 0 16 chr11 37867098 37867283 -112916270 + AluJb SINE Alu 108 289 -23 21 0 0 0 chr11 37868587 37868608 -112914945 + AT_rich Low_complexity Low_complexity 1 21 0 325 209 23 35 chr11 37868815 37868901 -112914652 - MIR SINE MIR -109 153 69 312 321 74 33 chr11 37869780 37869995 -112913558 - MIR SINE MIR -29 233 10 321 82 0 0 chr11 37870919 37870968 -112912585 + (TG)n Simple_repeat Simple_repeat 2 50 0 2662 109 64 7 chr11 37871173 37871577 -112911976 - MSTA LTR MaLR 0 428 2 704 295 62 5 chr11 37872306 37872530 -112911023 + MIR SINE MIR 15 251 -11 1316 165 12 31 chr11 37872947 37873201 -112910352 + LTR8 LTR ERV1 443 691 0 378 295 104 49 chr11 37873248 37873431 -112910122 + MIR3 SINE MIR 15 207 -1 279 65 87 0 chr11 37873869 37873915 -112909638 - MADE1 DNA Mariner 0 80 31 5324 186 53 27 chr11 37873938 37876430 -112907123 - L1MC1 LINE L1 -5 6328 3783 2093 128 14 0 chr11 37876430 37876727 -112906826 - AluSx SINE Alu -11 301 1 5324 186 53 27 chr11 37876727 37876783 -112906770 - L1MC1 LINE L1 -2550 3783 3730 312 215 149 8 chr11 37876818 37876939 -112906614 - L1ME4a LINE L1 -16 6105 5968 3819 97 16 2 chr11 37877842 37878388 -112905165 - MER41A LTR ERV1 0 554 1 493 196 0 15 chr11 37878517 37878650 -112904903 + CT-rich Low_complexity Low_complexity 2 132 0 206 221 104 52 chr11 37878752 37878829 -112904724 + MIR3 SINE MIR 108 188 -20 280 288 0 0 chr11 37879905 37879978 -112903575 + MIR3 SINE MIR 121 193 -15 409 350 68 16 chr11 37880278 37880577 -112902976 + L1MC4a LINE L1 5462 5785 -2023 393 58 0 0 chr11 37880577 37880629 -112902924 + (CA)n Simple_repeat Simple_repeat 2 53 0 409 350 68 16 chr11 37880629 37880695 -112902858 + L1MC4a LINE L1 5785 5846 -1962 271 228 0 25 chr11 37880758 37880837 -112902716 + L1ME4a LINE L1 5932 6008 -113 2146 117 0 7 chr11 37880859 37881159 -112902394 - AluSx SINE Alu -14 298 1 1919 142 20 13 chr11 37882401 37882704 -112900849 + AluJo SINE Alu 1 305 -7 409 306 145 32 chr11 37883137 37883323 -112900230 - MIR SINE MIR -51 211 5 2112 119 0 3 chr11 37883567 37883860 -112899693 + AluSx SINE Alu 1 292 -20 301 272 35 0 chr11 37884256 37884370 -112899183 - L1MC4 LINE L1 -1 8041 7924 680 303 32 25 chr11 37884443 37884724 -112898829 + L1MDa LINE L1 20 302 -6238 625 204 47 17 chr11 37885191 37885363 -112898190 + L1MDa LINE L1 908 1084 -5459 669 208 0 0 chr11 37885396 37885521 -112898032 + AluJb SINE Alu 179 303 -9 1840 193 111 31 chr11 37885521 37886142 -112897411 + L1MDa LINE L1 1098 1768 -4772 530 210 75 9 chr11 37886161 37886375 -112897178 - L1M4 LINE L1 -1621 4525 4298 570 51 26 0 chr11 37886375 37886453 -112897100 - Alu SINE Alu -12 299 220 2611 233 48 3 chr11 37886454 37887138 -112896415 - L1M4 LINE L1 -1833 4313 3599 395 344 72 79 chr11 37888013 37888318 -112895235 - L2 LINE L2 -33 3239 2937 460 325 51 47 chr11 37888556 37888811 -112894742 - MIR SINE MIR 0 262 7 21 36 0 0 chr11 37888970 37888998 -112894555 + AT_rich Low_complexity Low_complexity 1 28 0 690 311 13 17 chr11 37889775 37890013 -112893540 - MIR SINE MIR -14 248 12 189 0 0 0 chr11 37890018 37890039 -112893514 + (TTCA)n Simple_repeat Simple_repeat 2 22 0 491 287 16 8 chr11 37890365 37890487 -112893066 - MIR SINE MIR -69 139 17 728 353 21 25 chr11 37892391 37892674 -112890879 - L2 LINE L2 -1 3271 2990 433 367 38 9 chr11 37892713 37892923 -112890630 - L2 LINE L2 -464 2850 2635 791 187 0 15 chr11 37892925 37893059 -112890494 + FLAM_A SINE Alu 2 133 0 2282 109 0 10 chr11 37893077 37893390 -112890163 + AluSq SINE Alu 1 310 -3 765 228 124 39 chr11 37894686 37894919 -112888634 - MIR SINE MIR 0 262 10 1945 103 15 0 chr11 37895381 37895643 -112887910 + AluSc SINE Alu 36 301 -8 405 276 8 55 chr11 37896143 37896270 -112887283 + MIR SINE MIR 20 140 -68 394 254 95 24 chr11 37897298 37897424 -112886129 - L2 LINE L2 0 3272 3138 1713 177 0 41 chr11 37897443 37897766 -112885787 - AluJb SINE Alu 0 311 1 209 259 19 0 chr11 37897828 37897882 -112885671 - MIR SINE MIR -17 245 191 185 105 0 26 chr11 37897882 37897920 -112885633 + (TA)n Simple_repeat Simple_repeat 2 38 0 548 98 66 30 chr11 37897948 37898353 -112885200 + (TTATA)n Simple_repeat Simple_repeat 1 419 0 660 238 40 7 chr11 37898370 37898521 -112885032 - MIR SINE MIR -105 157 2 332 220 144 8 chr11 37899187 37899305 -112884248 + MER112 DNA MER1_type 121 254 -6 480 221 53 0 chr11 37899336 37899431 -112884122 - MER91B DNA MER1_type 0 190 91 326 256 33 50 chr11 37899454 37899575 -112883978 - MER91B DNA MER1_type -70 120 2 475 147 21 173 chr11 37899711 37899828 -112883725 - MER53 DNA DNA 0 189 110 864 151 29 0 chr11 37899828 37900000 -112883553 + L1MA7 LINE L1 6104 6280 -11 475 147 21 173 chr11 37900000 37900073 -112883480 - MER53 DNA DNA -79 110 28 5066 83 57 1 chr11 37900075 37900800 -112882753 - L1PA11 LINE L1 0 6174 5410 493 193 9 37 chr11 37900904 37901013 -112882540 - MER7A DNA MER2_type -242 104 1 383 335 49 57 chr11 37901477 37901722 -112881831 - L2 LINE L2 -2 3270 3028 421 277 15 22 chr11 37901749 37901886 -112881667 - L2 LINE L2 -2 3311 3176 379 238 0 0 chr11 37901941 37902021 -112881532 - L1M1 LINE L1 -7068 497 418 2180 126 0 3 chr11 37902434 37902743 -112880810 - AluJb SINE Alu -4 308 1 25 31 0 0 chr11 37903741 37903773 -112879780 + AT_rich Low_complexity Low_complexity 1 32 0 397 306 57 26 chr11 37904226 37904419 -112879134 - MIR SINE MIR -56 206 8 279 0 0 0 chr11 37906276 37906307 -112877246 + (TG)n Simple_repeat Simple_repeat 2 32 0 232 214 18 0 chr11 37906309 37906365 -112877188 + (TA)n Simple_repeat Simple_repeat 1 57 0 775 288 9 35 chr11 37906422 37906648 -112876905 + MIR SINE MIR 28 247 -15 207 315 144 0 chr11 37906689 37906800 -112876753 + L2 LINE L2 1711 1837 -1477 470 203 31 47 chr11 37906801 37906929 -112876624 - MER106B DNA MER1_type 0 1059 934 1665 263 151 44 chr11 37906930 37907873 -112875680 + L2 LINE L2 2163 3208 -105 1259 109 0 0 chr11 37907873 37908038 -112875515 - AluSq SINE Alu -140 173 9 385 274 0 11 chr11 37908041 37908136 -112875417 + L2 LINE L2 3216 3309 -4 889 295 68 4 chr11 37909985 37910596 -112872957 + MER115 DNA AcHobo 1 688 -5 2361 94 0 0 chr11 37910753 37911060 -112872493 - AluSg SINE Alu -3 307 1 845 257 83 69 chr11 37911589 37912084 -112871469 - L1MC4a LINE L1 -1981 5827 5326 650 257 135 33 chr11 37912270 37912573 -112870980 - MLT1J2 LTR MaLR 0 450 113 243 0 0 0 chr11 37913284 37913311 -112870242 + (GA)n Simple_repeat Simple_repeat 1 27 0 197 410 0 0 chr11 37913628 37913711 -112869842 + MIR3 SINE MIR 118 200 -8 1876 103 0 0 chr11 37913950 37914193 -112869360 + AluSc SINE Alu 1 243 -66 511 270 155 13 chr11 37914224 37914450 -112869103 + MLT1J LTR MaLR 217 474 -37 332 360 70 0 chr11 37914597 37914711 -112868842 - L2 LINE L2 -29 3243 3122 246 267 155 26 chr11 37914969 37915085 -112868468 + L2 LINE L2 3178 3308 -5 204 40 0 0 chr11 37915516 37915541 -112868012 + (CA)n Simple_repeat Simple_repeat 2 26 0 455 273 149 25 chr11 37916466 37916708 -112866845 + L2 LINE L2 2970 3241 -72 511 226 107 79 chr11 37917370 37917622 -112865931 - MER112 DNA MER1_type 0 260 2 490 280 78 16 chr11 37918304 37918497 -112865056 - MIR SINE MIR 0 262 58 495 272 139 11 chr11 37918527 37918707 -112864846 + L2 LINE L2 3111 3313 0 244 202 164 39 chr11 37919151 37919255 -112864298 + L1MC3 LINE L1 5790 5906 -1902 613 185 0 8 chr11 37919255 37919385 -112864168 + L1MC3 LINE L1 7343 7471 -314 357 225 45 9 chr11 37919376 37919487 -112864066 + L1MD3 LINE L1 7726 7840 -155 * 2068 133 3 3 chr11 37919650 37919972 -112863581 + AluSx SINE Alu 1 312 0 2062 126 0 11 chr11 37919994 37920320 -112863233 + AluSq SINE Alu 1 323 0 278 259 62 45 chr11 37920508 37920620 -112862933 + L1ME LINE L1 528 641 -5478 404 292 0 23 chr11 37920839 37921010 -112862543 + L1ME LINE L1 3317 3483 -2646 3832 92 5 4 chr11 37921029 37921582 -112861971 + L1PA11 LINE L1 5621 6174 0 418 269 48 70 chr11 37921673 37921985 -112861568 + L1ME LINE L1 3502 3806 -2323 1537 182 7 18 chr11 37922124 37922399 -112861154 + AluJo SINE Alu 21 292 -20 1278 284 106 20 chr11 37922500 37923003 -112860550 + L1ME LINE L1 3824 4282 -1847 856 199 32 0 chr11 37923003 37923159 -112860394 - FRAM SINE Alu -5 161 1 1278 284 106 20 chr11 37923159 37923722 -112859831 + L1ME LINE L1 4282 4982 -1147 225 236 126 8 chr11 37923726 37923853 -112859700 + L1ME LINE L1 5083 5224 -905 1900 141 40 17 chr11 37923888 37924185 -112859368 + AluSx SINE Alu 1 304 -8 428 275 98 50 chr11 37924214 37924552 -112859001 + L1ME LINE L1 5282 5635 -518 751 183 0 8 chr11 37924751 37924877 -112858676 - AluSg1 SINE Alu -184 125 1 2199 73 6 12 chr11 37924877 37925205 -112858348 - L1M1 LINE L1 -4550 3015 2690 7395 28 1 0 chr11 37925259 37926784 -112856769 - L1PA3 LINE L1 0 6155 4627 3849 53 4 0 chr11 37926784 37927292 -112856261 + L1PA8A LINE L1 5361 5870 -261 638 300 111 25 chr11 37929806 37930545 -112853008 - L1M4 LINE L1 -3262 3120 2333 635 246 81 122 chr11 37930835 37931756 -112851797 - HAL1 LINE L1 -761 1746 863 577 216 36 30 chr11 37932200 37932367 -112851186 - MER53 DNA DNA 0 189 22 266 167 56 28 chr11 37932594 37932666 -112850887 - AluSp SINE Alu -127 176 103 13113 161 41 24 chr11 37932666 37935079 -112848474 - L1M1 LINE L1 -3912 3653 1200 6242 83 2 2 chr11 37935182 37936033 -112847520 + L1P LINE L1 4161 5011 -1135 4328 199 32 31 chr11 37936032 37936972 -112846581 + L1M1 LINE L1 12 952 -6613 * 1349 107 46 53 chr11 37936972 37937234 -112846319 + THE1C LTR MaLR 1 260 -115 12164 73 8 2 chr11 37937337 37938918 -112844635 - L1P LINE L1 -4557 1589 1 3090 151 31 28 chr11 37938939 37939517 -112844036 - L1MA8 LINE L1 -3 6288 5709 2644 73 3 58 chr11 37939805 37940186 -112843367 + THE1A-int LTR MaLR 1221 1580 0 2444 100 14 11 chr11 37940188 37940538 -112843015 + THE1A LTR MaLR 5 355 0 968 188 25 5 chr11 37940544 37940741 -112842812 - L1P LINE L1 -786 5360 5160 18239 41 4 0 chr11 37940741 37943609 -112839944 - L1PA5 LINE L1 -3 6151 3275 15739 71 11 6 chr11 37943709 37945804 -112837749 - L1PA5 LINE L1 -3288 2858 753 21865 82 15 13 chr11 37945904 37948971 -112834582 - L1P LINE L1 -3059 3087 15 1078 229 9 9 chr11 37949455 37949665 -112833888 + MER63A DNA MER1_type 1 210 0 263 237 0 53 chr11 37949714 37949790 -112833763 - MIR SINE MIR 0 262 191 1211 137 23 6 chr11 37949837 37949863 -112833690 - MSTA LTR MaLR -8 424 400 2737 25 0 9 chr11 37949863 37950179 -112833374 + AluYb8 SINE Alu 1 313 -5 1211 137 23 6 chr11 37950179 37950365 -112833188 - MSTA LTR MaLR -32 400 206 2285 117 38 46 chr11 37950390 37950757 -112832796 + THE1B LTR MaLR 1 364 0 2400 101 0 0 chr11 37950887 37951194 -112832359 - AluSx SINE Alu -5 307 1 778 212 241 17 chr11 37951357 37951593 -112831960 - L1MD3 LINE L1 -155 7840 7552 297 238 48 48 chr11 37952499 37952604 -112830949 + MIR SINE MIR 48 152 -110 1586 164 0 27 chr11 37953884 37954147 -112829406 - AluSx SINE Alu -14 298 43 434 123 15 0 chr11 37955275 37955340 -112828213 - MSTA LTR MaLR -254 121 56 1583 175 24 69 chr11 37955459 37955883 -112827670 + MER34B LTR ERV1 5 397 -168 1126 229 10 38 chr11 37956438 37956726 -112826827 + MLT1A1 LTR MaLR 1 280 -85 186 43 0 0 chr11 37956750 37956773 -112826780 + (TAGA)n Simple_repeat Simple_repeat 4 26 0 530 100 10 0 chr11 37956775 37956875 -112826678 + (TCTA)n Simple_repeat Simple_repeat 4 104 0 1405 156 14 81 chr11 37956875 37957170 -112826383 - AluSx SINE Alu -22 290 16 599 225 0 77 chr11 37957356 37957565 -112825988 + AluJb SINE Alu 106 298 -14 1378 203 37 51 chr11 37957774 37958162 -112825391 + MLT1D LTR MaLR 30 505 -105 1002 229 72 20 chr11 37958450 37958742 -112824811 + MLT1A1 LTR MaLR 1 307 -58 1156 97 98 0 chr11 38008785 38009052 -112774501 - L1P4 LINE L1 -648 5520 5211 2072 138 41 17 chr11 38009082 38009576 -112773977 - MER6A DNA MER2_type 0 605 1 231 36 0 0 chr11 38010037 38010065 -112773488 + (T)n Simple_repeat Simple_repeat 1 28 0 502 295 34 43 chr11 38010877 38011084 -112772469 - MIR SINE MIR -56 206 2 390 206 159 0 chr11 38012032 38012139 -112771414 - MIR SINE MIR -67 195 72 429 297 17 0 chr11 38012711 38012829 -112770724 - L2 LINE L2 -3 3310 3191 1835 158 7 0 chr11 38012999 38013291 -112770262 + AluSx SINE Alu 1 294 -18 445 279 27 9 chr11 38013738 38013849 -112769704 - L2 LINE L2 -3 3310 3198 337 250 43 9 chr11 38014079 38014195 -112769358 - MER103 DNA DNA -46 120 1 318 200 40 13 chr11 38014656 38014731 -112768822 + L2 LINE L2 3196 3272 0 195 211 96 0 chr11 38015110 38015162 -112768391 + MIR SINE MIR 106 162 -100 302 264 77 51 chr11 38015464 38015627 -112767926 - MIR SINE MIR -37 171 6 665 303 51 73 chr11 38015627 38016039 -112767514 + L2 LINE L2 2344 2746 -568 504 311 84 15 chr11 38016212 38016600 -112766953 + L2 LINE L2 2793 3261 -52 185 309 136 37 chr11 38016684 38016846 -112766707 + MIR SINE MIR 41 218 -44 1670 128 0 13 chr11 38017325 38017560 -112765993 - AluSg SINE Alu -15 295 64 556 140 19 28 chr11 38017560 38017667 -112765886 + AluSg/x SINE Alu 203 308 -4 204 240 20 0 chr11 38017667 38017717 -112765836 - MIR SINE MIR -14 248 198 41663 45 3 0 chr11 38018101 38024239 -112759314 - L1PA4 LINE L1 0 6155 1 2813 153 31 24 chr11 38024260 38024834 -112758719 - L1MA8 LINE L1 -3 6288 5711 993 241 13 30 chr11 38025104 38025340 -112758213 - MIR SINE MIR -2 260 29 531 248 8 168 chr11 38026301 38026539 -112757014 + MIR SINE MIR 2 201 -61 245 279 44 0 chr11 38026537 38026605 -112756948 - L2 LINE L2 0 3313 3243 * 449 291 47 6 chr11 38026605 38026777 -112756776 - MLT1I LTR MaLR -36 373 195 471 275 47 62 chr11 38027024 38027217 -112756336 + MIR3 SINE MIR 19 208 0 21 36 0 0 chr11 38028736 38028764 -112754789 + AT_rich Low_complexity Low_complexity 1 28 0 217 353 191 15 chr11 38028798 38028934 -112754619 - L2 LINE L2 -1 3271 3112 195 129 0 0 chr11 38029337 38029368 -112754185 + (TTCA)n Simple_repeat Simple_repeat 2 32 0 271 284 129 26 chr11 38030281 38030397 -112753156 + MIR SINE MIR 19 146 -62 236 128 0 21 chr11 38031178 38031225 -112752328 + MER63 DNA MER1_type 34 79 -851 316 284 21 60 chr11 38031271 38031476 -112752077 + MIR SINE MIR 20 258 -4 486 290 67 76 chr11 38031823 38032061 -112751492 - MIR SINE MIR -18 244 9 1039 289 36 30 chr11 38032451 38032787 -112750766 + MER102b DNA MER1_type 4 341 0 334 329 44 13 chr11 38033174 38033332 -112750221 + MIR SINE MIR 100 262 0 191 328 0 16 chr11 38033322 38033386 -112750167 + L2 LINE L2 3210 3272 0 * 5748 106 25 13 chr11 38033495 38034284 -112749269 - L1PA16 LINE L1 -1 6165 5387 2023 118 105 12 chr11 38034284 38034607 -112748946 + THE1A LTR MaLR 1 353 -2 12450 81 7 27 chr11 38034609 38035045 -112748508 + THE1A-int LTR MaLR 1 444 -1136 2118 122 0 3 chr11 38035045 38035340 -112748213 + AluSg SINE Alu 7 300 -10 12450 81 7 27 chr11 38035340 38036514 -112747039 + THE1A-int LTR MaLR 444 1580 0 2444 100 14 11 chr11 38036516 38036866 -112746687 + THE1A LTR MaLR 5 355 0 5748 106 25 13 chr11 38036866 38037080 -112746473 - L1PA16 LINE L1 -779 5387 5147 * 41014 68 11 3 chr11 38037067 38043171 -112740382 - L1PA5 LINE L1 -1 6153 1 2457 199 21 30 chr11 38043178 38043735 -112739818 - L1PA16 LINE L1 -973 5173 4622 248 290 121 16 chr11 38044155 38044279 -112739274 - MIR SINE MIR -70 192 56 691 243 91 69 chr11 38044441 38044816 -112738737 - L2 LINE L2 0 3313 2931 370 344 19 94 chr11 38045571 38045932 -112737621 - L2 LINE L2 -1 3271 2938 262 293 93 84 chr11 38046147 38046362 -112737191 - MLT1L LTR MaLR -205 410 194 252 293 57 57 chr11 38046470 38046593 -112736960 - MIR SINE MIR -61 201 79 574 247 62 81 chr11 38046645 38046888 -112736665 - MIR SINE MIR -24 238 6 227 95 48 0 chr11 38048189 38048231 -112735322 + (TATG)n Simple_repeat Simple_repeat 2 45 0 261 258 90 0 chr11 38049813 38049902 -112733651 - MIR SINE MIR -82 180 84 324 238 38 0 chr11 38050200 38050280 -112733273 + MIR SINE MIR 92 174 -88 347 292 46 15 chr11 38053078 38053208 -112730345 - MIR SINE MIR -109 153 20 362 338 116 28 chr11 38055152 38055506 -112728047 + L2 LINE L2 2843 3268 -4 513 265 151 29 chr11 38055590 38055668 -112727885 + L2 LINE L2 2996 3063 -250 180 0 0 0 chr11 38055668 38055688 -112727865 + (CA)n Simple_repeat Simple_repeat 2 21 0 513 265 151 29 chr11 38055688 38055888 -112727665 + L2 LINE L2 3063 3308 -5 445 230 50 43 chr11 38055908 38056047 -112727506 - MIR SINE MIR -116 146 7 201 307 159 23 chr11 38056233 38056321 -112727232 - L2 LINE L2 -39 3233 3134 2319 100 0 0 chr11 38056817 38057116 -112726437 + AluSx SINE Alu 1 299 -13 314 281 124 38 chr11 38057353 38057538 -112726015 + MIR SINE MIR 36 236 -26 285 323 98 23 chr11 38057570 38057703 -112725850 - MIR SINE MIR -108 154 12 866 297 194 11 chr11 38058366 38059078 -112724475 - L2 LINE L2 0 3313 2478 248 289 156 33 chr11 38059331 38059421 -112724132 + MIR SINE MIR 36 136 -72 616 221 107 99 chr11 38059430 38059683 -112723870 - MIR SINE MIR -3 259 5 2445 122 188 169 chr11 38060608 38060917 -112722636 + L1MC3 LINE L1 6761 7063 -722 284 300 8 25 chr11 38060917 38061037 -112722516 + MLT1F1 LTR MaLR 8 125 -442 2445 122 188 169 chr11 38061037 38061470 -112722083 + L1MC3 LINE L1 7063 7638 -147 2226 91 3 16 chr11 38061470 38061988 -112721565 - MER4A LTR ERV1 0 664 1 674 169 92 0 chr11 38061988 38062118 -112721435 + L1MC3 LINE L1 7635 7776 -9 315 269 188 43 chr11 38062191 38062515 -112721038 + L1ME4a LINE L1 5680 6050 -71 556 268 166 19 chr11 38063184 38063389 -112720164 + MIR SINE MIR 28 262 0 3931 76 362 2 chr11 38063593 38064200 -112719353 - LTR12 LTR ERV1 0 826 1 422 227 53 30 chr11 38065429 38065561 -112717992 - Charlie2a DNA MER1_type -11 2851 2717 932 180 0 17 chr11 38065577 38065755 -112717798 - Charlie2a DNA MER1_type -1206 1656 1482 868 240 19 39 chr11 38065942 38066200 -112717353 - Charlie2a DNA MER1_type -2607 255 3 291 279 26 65 chr11 38066413 38066567 -112716986 + L3 LINE CR1 1231 1378 -199 370 246 172 8 chr11 38066630 38066752 -112716801 - MIR SINE MIR -82 180 39 24 0 0 0 chr11 38066835 38066859 -112716694 + AT_rich Low_complexity Low_complexity 1 24 0 1950 128 35 3 chr11 38067018 38067307 -112716246 + AluSg SINE Alu 1 298 -12 300 367 75 0 chr11 38067598 38067718 -112715835 + L2 LINE L2 3139 3267 -5 401 255 184 10 chr11 38068657 38068853 -112714700 + MIR SINE MIR 33 262 0 332 251 140 41 chr11 38069203 38069374 -112714179 - L2 LINE L2 -14 3299 3112 627 332 43 17 chr11 38069643 38069875 -112713678 - MIR SINE MIR -23 239 2 21 57 0 0 chr11 38071237 38071272 -112712281 + AT_rich Low_complexity Low_complexity 1 35 0 216 0 0 0 chr11 38071776 38071800 -112711753 + (A)n Simple_repeat Simple_repeat 1 24 0 206 244 0 0 chr11 38073431 38073472 -112710081 + (CATA)n Simple_repeat Simple_repeat 2 42 0 222 270 146 0 chr11 38075413 38075502 -112708051 - MIR SINE MIR -76 132 31 359 288 70 53 chr11 38076018 38076241 -112707312 - MIR SINE MIR -21 241 5 316 222 28 0 chr11 38080330 38080402 -112703151 + MIR SINE MIR 183 256 -6 330 288 92 61 chr11 38080865 38081028 -112702525 + MIR3 SINE MIR 35 202 -6 242 204 0 0 chr11 38081099 38081148 -112702405 + (TG)n Simple_repeat Simple_repeat 1 49 0 2661 102 70 5 chr11 38081225 38081627 -112701926 + MSTA LTR MaLR 1 428 0 499 237 0 35 chr11 38081644 38081758 -112701795 + MER103 DNA DNA 2 111 -55 312 282 78 19 chr11 38081819 38081922 -112701631 - MIR3 SINE MIR -39 169 61 229 109 43 0 chr11 38082162 38082208 -112701345 + CT-rich Low_complexity Low_complexity 1 48 0 625 277 136 9 chr11 38083835 38084055 -112699498 + MIR SINE MIR 13 260 -2 397 273 35 14 chr11 38084129 38084272 -112699281 + L1ME LINE L1 5627 5772 -349 2116 106 0 7 chr11 38085207 38085509 -112698044 + AluSx SINE Alu 1 300 -12 420 279 89 37 chr11 38086395 38086585 -112696968 - MIR SINE MIR -2 260 61 437 268 128 0 chr11 38086935 38087099 -112696454 - MIR SINE MIR -68 194 10 290 235 122 20 chr11 38087629 38087727 -112695826 + MLT1L LTR MaLR 105 212 -403 328 264 193 36 chr11 38087924 38088064 -112695489 - MIR SINE MIR -79 183 22 517 273 48 36 chr11 38088678 38088843 -112694710 + L2 LINE L2 3106 3272 0 438 262 99 64 chr11 38089527 38089699 -112693854 + MIR SINE MIR 9 186 -76 203 255 0 39 chr11 38089964 38090015 -112693538 + MIR SINE MIR 23 71 -191 242 290 29 0 chr11 38090015 38090084 -112693469 - MER81 DNA DNA 0 114 44 203 320 21 41 chr11 38090847 38090944 -112692609 - MIR SINE MIR -42 220 126 2175 92 0 0 chr11 38091042 38091363 -112692190 + AluSx SINE Alu 1 321 0 362 137 0 129 chr11 38091406 38091530 -112692023 - Charlie7 DNA MER1_type -32 2580 2473 251 231 192 0 chr11 38091556 38091634 -112691919 - Charlie7 DNA MER1_type -2514 98 6 * 276 260 4 4 chr11 38091628 38091718 -112691835 - Charlie8 DNA MER1_type -1002 1415 1355 713 261 5 21 chr11 38091775 38091963 -112691590 - Charlie8 DNA MER1_type -2156 261 77 456 291 202 5 chr11 38092048 38092251 -112691302 + MIR SINE MIR 20 262 0 519 258 46 20 chr11 38092507 38092658 -112690895 + MIR SINE MIR 35 189 -73 2831 215 72 52 chr11 38092736 38093539 -112690014 - MER21B LTR ERV1 -30 833 15 1387 222 60 72 chr11 38093567 38094054 -112689499 + LTR33 LTR ERVL 41 521 0 372 361 16 0 chr11 38094240 38094362 -112689191 - L2 LINE L2 -3 3269 3146 507 280 146 41 chr11 38094559 38094923 -112688630 + MLT1L LTR MaLR 201 602 -13 360 245 51 20 chr11 38094929 38095027 -112688526 - MIR3 SINE MIR -27 181 81 227 149 0 21 chr11 38095521 38095568 -112687985 + (CA)n Simple_repeat Simple_repeat 1 46 0 1835 166 65 39 chr11 38095709 38095866 -112687687 + MLT1A1 LTR MaLR 2 154 -211 2112 103 3 3 chr11 38095866 38096168 -112687385 + AluSg SINE Alu 1 302 -8 1835 166 65 39 chr11 38096168 38096365 -112687188 + MLT1A1 LTR MaLR 154 365 0 1304 217 125 70 chr11 38096804 38097292 -112686261 + MLT1H LTR MaLR 5 519 -30 712 303 43 0 chr11 38097314 38097522 -112686031 - MIR SINE MIR -12 250 34 2046 114 92 25 chr11 38097639 38097955 -112685598 + MER1B DNA MER1_type 1 337 0 1232 273 89 64 chr11 38098037 38098690 -112684863 + L2 LINE L2 2458 3107 -206 1639 107 8 0 chr11 38098697 38098940 -112684613 - AluSx SINE Alu -4 308 64 2089 90 11 0 chr11 38099264 38099541 -112684012 + AluSx SINE Alu 1 280 -32 180 0 0 0 chr11 38099543 38099563 -112683990 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 185 273 237 14 chr11 38099720 38099859 -112683694 - MIR SINE MIR -73 189 20 245 211 28 128 chr11 38099963 38100072 -112683481 - L2 LINE L2 -2 3270 3173 189 74 0 0 chr11 38100305 38100332 -112683221 + (T)n Simple_repeat Simple_repeat 1 27 0 231 266 110 19 chr11 38100602 38100756 -112682797 + L1ME4a LINE L1 5945 6112 -9 210 352 0 0 chr11 38101203 38101274 -112682279 + MIR SINE MIR 121 191 -71 1146 209 122 15 chr11 38101597 38102096 -112681457 + MLT1E2 LTR MaLR 8 626 0 646 303 91 0 chr11 38102155 38102363 -112681190 + MIR SINE MIR 23 249 -13 1523 119 128 62 chr11 38102521 38102593 -112680960 - THE1C LTR MaLR 0 375 309 2183 129 0 0 chr11 38102593 38102903 -112680650 + AluSx SINE Alu 1 310 -2 1523 119 128 62 chr11 38102903 38103182 -112680371 - THE1C LTR MaLR -66 309 1 280 151 27 27 chr11 38103420 38103493 -112680060 - L1ME4a LINE L1 -114 6007 5935 1373 197 151 3 chr11 38103678 38103982 -112679571 - MLT1D LTR MaLR 0 505 157 469 274 27 7 chr11 38104592 38104738 -112678815 - MIR SINE MIR 0 262 114 1011 196 0 0 chr11 38104823 38104986 -112678567 + FAM SINE Alu 1 163 -12 401 250 83 30 chr11 38105047 38105215 -112678338 - L1MC4a LINE L1 -1938 5870 5694 180 0 0 0 chr11 38105742 38105762 -112677791 + (TTTAA)n Simple_repeat Simple_repeat 1 20 0 2205 80 7 10 chr11 38105762 38106052 -112677501 - AluSx SINE Alu -21 291 1 231 210 177 0 chr11 38106325 38106387 -112677166 - MLT1L LTR MaLR -77 538 466 467 179 0 63 chr11 38106402 38106497 -112677056 - L1MC4a LINE L1 -2177 5631 5543 2600 264 73 25 chr11 38106527 38107415 -112676138 + L1MC4a LINE L1 5256 6205 -1603 1624 160 3 35 chr11 38107415 38107733 -112675820 + AluJo SINE Alu 5 312 0 2600 264 73 25 chr11 38107733 38107910 -112675643 + L1MC4a LINE L1 6205 6372 -1436 902 265 74 51 chr11 38107923 38108259 -112675294 - MLT1I LTR MaLR -2 407 64 324 319 110 55 chr11 38108320 38108502 -112675051 + L1MC4a LINE L1 6402 6593 -1215 271 207 0 17 chr11 38108502 38108560 -112674993 + HERVL LTR ERVL 1863 1919 -3735 * 1199 307 21 50 chr11 38108559 38108943 -112674610 + HERVL LTR ERVL 2120 2458 -3196 1030 311 80 37 chr11 38109103 38109212 -112674341 - ERVL LTR ERVL -2156 3608 3505 2243 93 0 22 chr11 38109212 38109525 -112674028 - AluSc SINE Alu -3 306 1 1030 311 80 37 chr11 38109525 38109900 -112673653 - ERVL LTR ERVL -2259 3505 3103 350 265 66 42 chr11 38109939 38110105 -112673448 + HERVL LTR ERVL 3677 3846 -1918 356 270 35 26 chr11 38110191 38110306 -112673247 - ERVL LTR ERVL -1063 4701 4586 786 318 101 22 chr11 38110358 38110855 -112672698 + HERVL LTR ERVL 4428 4963 -801 1802 218 111 102 chr11 38111705 38112790 -112670763 + L1MC5 LINE L1 6768 7861 -100 418 204 66 122 chr11 38112832 38113028 -112670525 + LTR33A LTR ERVL 7 191 -332 2122 156 34 5 chr11 38113066 38113288 -112670265 - MLT1B LTR MaLR 0 390 151 1740 141 3 38 chr11 38113288 38113607 -112669946 + AluJb SINE Alu 5 312 0 2122 156 34 5 chr11 38113607 38113763 -112669790 - MLT1B LTR MaLR -239 151 1 1027 194 66 5 chr11 38113764 38113975 -112669578 - MER58A DNA MER1_type 0 224 1 554 259 37 16 chr11 38114011 38114200 -112669353 + LTR33 LTR ERVL 327 519 -2 2383 68 0 10 chr11 38114250 38114560 -112668993 + AluY SINE Alu 1 307 -4 2016 107 4 4 chr11 38114569 38114850 -112668703 + AluSx SINE Alu 1 281 -31 405 0 0 0 chr11 38114856 38114901 -112668652 + (TAA)n Simple_repeat Simple_repeat 2 46 0 325 294 0 0 chr11 38116236 38116321 -112667232 - L2 LINE L2 -2 3270 3186 284 263 17 42 chr11 38116348 38116466 -112667087 + (CATATA)n Simple_repeat Simple_repeat 4 118 0 1582 108 0 33 chr11 38116729 38116969 -112666584 - AluSg/x SINE Alu -11 301 70 974 99 0 0 chr11 38117070 38117201 -112666352 - AluSg SINE Alu -179 131 1 1940 114 7 4 chr11 38117225 38117533 -112666020 + AluSx SINE Alu 1 309 0 281 173 90 135 chr11 38117642 38117774 -112665779 + LTR33A LTR ERVL 86 210 -313 591 163 0 0 chr11 38117774 38117866 -112665687 - MER58B DNA MER1_type 0 341 250 461 293 47 20 chr11 38117868 38118018 -112665535 + MIR SINE MIR 65 218 -44 1320 151 19 0 chr11 38118156 38118362 -112665191 - MER2 DNA MER2_type -135 210 1 519 199 6 12 chr11 38119916 38120087 -112663466 + (TGGA)n Simple_repeat Simple_repeat 4 173 0 469 246 0 11 chr11 38120141 38120320 -112663233 + (TGGA)n Simple_repeat Simple_repeat 2 178 0 268 238 19 0 chr11 38120334 38120439 -112663114 + (TGGA)n Simple_repeat Simple_repeat 1 107 0 970 254 14 5 chr11 38120486 38120706 -112662847 + Charlie8 DNA MER1_type 40 261 -2156 1804 216 25 8 chr11 38120815 38121172 -112662381 - MLT1A1 LTR MaLR -2 363 1 330 286 36 60 chr11 38121467 38121635 -112661918 + L2 LINE L2 2927 3090 -182 329 235 51 20 chr11 38121816 38121914 -112661639 - MER91C DNA MER1_type -13 127 27 501 287 55 42 chr11 38123017 38123254 -112660299 + MLT1K LTR MaLR 98 337 -251 844 165 57 19 chr11 38123438 38123596 -112659957 - AluJ SINE Alu -18 294 131 207 0 0 0 chr11 38123603 38123626 -112659927 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1912 109 50 0 chr11 38123637 38123920 -112659633 - AluSx SINE Alu -15 297 1 804 175 0 0 chr11 38125331 38125457 -112658096 - AluJ SINE Alu -182 130 5 22 0 0 0 chr11 38125857 38125879 -112657674 + AT_rich Low_complexity Low_complexity 1 22 0 806 297 108 20 chr11 38126697 38127040 -112656513 + L2 LINE L2 2847 3219 -94 5890 79 5 17 chr11 38127040 38127851 -112655702 - L1PA13 LINE L1 -2 6161 5361 486 257 0 9 chr11 38127851 38127956 -112655597 + L2 LINE L2 3210 3313 0 432 320 67 5 chr11 38127966 38128160 -112655393 + MIR SINE MIR 22 227 -35 4198 42 4 2 chr11 38128273 38128777 -112654776 + L1PA5 LINE L1 5649 6153 -1 213 290 16 0 chr11 38128987 38129049 -112654504 + (CA)n Simple_repeat Simple_repeat 2 64 0 441 283 94 39 chr11 38129570 38129735 -112653818 + MIR SINE MIR 15 189 -73 407 295 45 9 chr11 38129735 38129847 -112653706 - MER91C DNA MER1_type 0 140 25 280 269 0 0 chr11 38129864 38129931 -112653622 + MIR SINE MIR 188 254 -8 1711 151 26 26 chr11 38129983 38130295 -112653258 + AluSx SINE Alu 1 312 0 263 333 19 28 chr11 38130650 38130758 -112652795 + HAL1 LINE L1 359 465 -2042 537 260 119 74 chr11 38130850 38131162 -112652391 + HAL1 LINE L1 589 914 -1593 219 254 0 0 chr11 38131154 38131217 -112652336 + GA-rich Low_complexity Low_complexity 2 64 0 * 1405 151 0 0 chr11 38131258 38131464 -112652089 + AluSg/x SINE Alu 90 295 -17 2317 92 0 0 chr11 38131468 38131761 -112651792 + AluY SINE Alu 1 293 -18 1146 262 109 52 chr11 38131791 38132719 -112650834 + HAL1 LINE L1 987 1969 -538 207 0 0 0 chr11 38133502 38133525 -112650028 + (T)n Simple_repeat Simple_repeat 1 23 0 808 261 102 33 chr11 38133581 38134003 -112649550 + HAL1 LINE L1 2057 2507 0 786 244 91 22 chr11 38134010 38134330 -112649223 - L1ME4a LINE L1 -12 6109 5768 1244 253 81 22 chr11 38134692 38135139 -112648414 + MLT1K LTR MaLR 1 473 -3 1955 139 0 33 chr11 38135460 38135763 -112647790 - AluSx SINE Alu -19 293 1 326 264 55 0 chr11 38135799 38135911 -112647642 - L1ME4a LINE L1 -326 5795 5691 240 203 78 0 chr11 38135929 38135993 -112647560 + MER69B DNA AcHobo 6 74 -1152 3094 238 80 5 chr11 38136024 38136848 -112646705 + MER69B DNA AcHobo 340 1225 -1 754 239 80 19 chr11 38136859 38137072 -112646481 + MIR SINE MIR 22 247 -15 2290 115 0 0 chr11 38137079 38137384 -112646169 - AluSx SINE Alu -7 305 1 233 317 70 0 chr11 38137401 38137543 -112646010 - L1ME4a LINE L1 -443 5678 5527 480 80 0 136 chr11 38137862 38137908 -112645645 - MADE1 DNA Mariner -4 76 46 2392 102 0 0 chr11 38137908 38138221 -112645332 + AluSq SINE Alu 1 313 0 480 80 0 136 chr11 38138221 38138262 -112645291 - MADE1 DNA Mariner -34 46 1 227 239 28 0 chr11 38139130 38139201 -112644352 + (TAGA)n Simple_repeat Simple_repeat 3 75 0 1997 114 0 46 chr11 38139502 38139808 -112643745 + AluSc SINE Alu 6 297 -12 23 0 0 0 chr11 38140376 38140399 -112643154 + AT_rich Low_complexity Low_complexity 1 23 0 267 301 106 8 chr11 38141223 38141346 -112642207 - L2 LINE L2 -497 2817 2683 296 217 178 39 chr11 38141402 38141632 -112641921 + L1ME4a LINE L1 5822 6083 -38 1438 188 28 35 chr11 38141647 38141760 -112641793 + AluJb SINE Alu 1 113 -208 1885 140 91 23 chr11 38141760 38142111 -112641442 + THE1C LTR MaLR 1 375 0 1438 188 28 35 chr11 38142111 38142320 -112641233 + AluJb SINE Alu 113 321 0 352 324 72 14 chr11 38142375 38142514 -112641039 - MIR SINE MIR -109 153 7 1754 232 96 8 chr11 38142547 38143047 -112640506 - L1ME2 LINE L1 -36 6197 5654 442 211 0 53 chr11 38143050 38143145 -112640408 + MER21B LTR ERV1 1 90 -773 2796 224 71 52 chr11 38143152 38143974 -112639579 + MER21B LTR ERV1 23 841 -22 2177 209 88 104 chr11 38143997 38144446 -112639107 - L1ME2 LINE L1 -585 5648 5193 327 49 0 0 chr11 38144446 38144487 -112639066 + (TG)n Simple_repeat Simple_repeat 2 42 0 2043 118 11 0 chr11 38144487 38144766 -112638787 - AluSg SINE Alu -28 282 1 2177 209 88 104 chr11 38144766 38145116 -112638437 - L1ME2 LINE L1 -1039 5194 4840 787 148 0 0 chr11 38145116 38145264 -112638289 + AluSg/x SINE Alu 170 317 0 2177 209 88 104 chr11 38145264 38145672 -112637881 - L1ME2 LINE L1 -1393 4840 4347 1915 264 86 13 chr11 38145672 38146419 -112637134 - L1ME2 LINE L1 -2320 3895 3095 5593 146 20 40 chr11 38146445 38147038 -112636515 - L1MA7 LINE L1 -9 6282 5679 2357 97 3 0 chr11 38147038 38147348 -112636205 - AluY SINE Alu 0 311 1 5593 146 20 40 chr11 38147348 38147579 -112635974 - L1MA7 LINE L1 -612 5679 5445 375 23 0 0 chr11 38147589 38147633 -112635920 + (TG)n Simple_repeat Simple_repeat 1 44 0 2171 113 3 0 chr11 38147633 38147913 -112635640 - AluSx SINE Alu -28 284 1 5593 146 20 40 chr11 38147913 38148588 -112634965 - L1MA7 LINE L1 -846 5445 4810 4415 269 52 56 chr11 38148579 38148818 -112634735 - L1ME2 LINE L1 -3108 3107 2869 * 2372 97 0 7 chr11 38148818 38149128 -112634425 + AluSg1 SINE Alu 1 308 -1 4415 269 52 56 chr11 38149128 38149321 -112634232 - L1ME2 LINE L1 -3346 2869 2677 2117 125 3 7 chr11 38149321 38149625 -112633928 + AluSx SINE Alu 1 303 -9 4415 269 52 56 chr11 38149625 38152020 -112631533 - L1ME2 LINE L1 -3538 2677 334 2273 97 0 3 chr11 38152020 38152319 -112631234 + AluSg SINE Alu 1 298 -12 4415 269 52 56 chr11 38152319 38152494 -112631059 - L1ME2 LINE L1 -5881 334 160 1876 130 114 19 chr11 38154175 38154483 -112629070 - MER1B DNA MER1_type 0 337 1 1385 169 142 15 chr11 38154558 38154825 -112628728 - AluJo SINE Alu 0 302 2 327 317 104 20 chr11 38154883 38155132 -112628421 + L2 LINE L2 2812 3081 -191 348 218 39 0 chr11 38155170 38155248 -112628305 - L2 LINE L2 -2 3270 3190 259 359 82 13 chr11 38155352 38155511 -112628042 + L2 LINE L2 3138 3307 -6 1721 210 161 20 chr11 38155751 38156242 -112627311 + MLT1F1 LTR MaLR 8 567 0 1749 190 8 37 chr11 38156372 38156697 -112626856 + MLT1A1 LTR MaLR 12 328 -37 2211 148 92 56 chr11 38156697 38157108 -112626445 + MSTB LTR MaLR 1 426 0 1749 190 8 37 chr11 38157108 38157134 -112626419 + MLT1A1 LTR MaLR 328 353 -12 745 181 47 7 chr11 38157277 38157426 -112626127 - MIR SINE MIR -18 244 90 371 286 91 23 chr11 38157464 38157685 -112625868 - MIR SINE MIR -20 242 4 243 287 46 11 chr11 38158452 38158539 -112625014 - MER5A DNA MER1_type -9 180 91 2326 82 16 10 chr11 38158555 38158860 -112624693 - AluY SINE Alu -4 307 1 577 161 0 0 chr11 38159239 38159326 -112624227 + AluSg/x SINE Alu 213 299 -10 194 259 19 0 chr11 38159425 38159479 -112624074 + L2 LINE L2 2996 3050 -222 2973 104 41 2 chr11 38159561 38159973 -112623580 + MSTA LTR MaLR 1 428 0 646 321 124 37 chr11 38160043 38160569 -112622984 - L2 LINE L2 0 3313 2743 355 224 105 81 chr11 38160652 38160862 -112622691 - LTR33 LTR ERVL -270 251 37 1325 259 73 59 chr11 38160969 38161489 -112622064 + L1MC4a LINE L1 1944 2455 -3760 1798 178 7 3 chr11 38161489 38161781 -112621772 - AluJo SINE Alu -16 296 4 1325 259 73 59 chr11 38161781 38161895 -112621658 + L1MC4a LINE L1 2455 2566 -3649 1949 168 7 0 chr11 38161895 38162205 -112621348 - AluJb SINE Alu 0 312 1 1325 259 73 59 chr11 38162205 38162567 -112620986 + L1MC4a LINE L1 2566 2919 -3296 1159 246 71 55 chr11 38162548 38163110 -112620443 + L1MC4a LINE L1 4525 5095 -1120 * 22 0 0 0 chr11 38163121 38163143 -112620410 + AT_rich Low_complexity Low_complexity 1 22 0 2182 91 3 14 chr11 38163146 38163442 -112620111 + AluY SINE Alu 1 293 -18 25 51 0 0 chr11 38163486 38163525 -112620028 + AT_rich Low_complexity Low_complexity 1 39 0 4153 242 101 72 chr11 38163553 38163879 -112619674 + L1MC4a LINE L1 5084 5399 -836 1911 148 30 3 chr11 38163879 38164183 -112619370 + AluSx SINE Alu 1 312 0 4153 242 101 72 chr11 38164183 38166176 -112617377 + L1MC4a LINE L1 5399 5994 -241 1595 177 57 114 chr11 38166167 38166747 -112616806 + L1ME1 LINE L1 5473 6085 -81 * 2263 160 18 3 chr11 38166747 38167079 -112616474 - MER1B DNA MER1_type 0 337 1 1595 177 57 114 chr11 38167079 38167140 -112616413 + L1ME1 LINE L1 6085 5993 -173 2333 92 3 3 chr11 38167140 38167446 -112616107 + AluY SINE Alu 1 306 -5 1595 177 57 114 chr11 38167446 38167594 -112615959 + L1ME1 LINE L1 5992 6147 -19 1514 200 104 11 chr11 38167684 38168063 -112615490 + L1MC4a LINE L1 6111 6242 0 * 1644 241 86 19 chr11 38168059 38168824 -112614729 + L1ME3 LINE L1 5152 6024 -138 300 174 0 0 chr11 38168828 38168874 -112614679 + L1ME3A LINE L1 6070 6115 -55 1394 287 79 27 chr11 38170059 38170644 -112612909 - MLT1L LTR MaLR 0 615 1 1750 147 17 31 chr11 38170735 38171027 -112612526 - AluJo SINE Alu -24 288 1 227 196 39 0 chr11 38171559 38171610 -112611943 + MLT1K LTR MaLR 532 584 -4 2101 117 3 0 chr11 38172023 38172313 -112611240 + AluSx SINE Alu 1 291 -21 327 49 0 0 chr11 38172315 38172356 -112611197 + (TG)n Simple_repeat Simple_repeat 2 42 0 313 294 108 0 chr11 38172369 38172471 -112611082 - MIR SINE MIR -119 143 31 382 169 15 0 chr11 38174115 38174177 -112609376 - MER20 DNA MER1_type 0 219 157 2149 154 76 21 chr11 38174177 38174236 -112609317 - MLT2A2 LTR ERVL 0 554 500 2287 117 0 3 chr11 38174236 38174545 -112609008 - AluY SINE Alu 0 311 4 2149 154 76 21 chr11 38174545 38174990 -112608563 - MLT2A2 LTR ERVL -54 500 1 764 134 148 28 chr11 38174992 38175134 -112608419 - MER20 DNA MER1_type -60 159 1 29 28 0 0 chr11 38175750 38175786 -112607767 + AT_rich Low_complexity Low_complexity 1 36 0 2131 107 14 3 chr11 38175929 38176219 -112607334 + AluSp SINE Alu 1 293 -20 306 243 29 39 chr11 38176288 38176391 -112607162 - L1ME4a LINE L1 -54 6067 5966 580 312 45 13 chr11 38176425 38176701 -112606852 - L1ME4a LINE L1 -330 5791 5542 2039 82 0 30 chr11 38177042 38177310 -112606243 - AluSg SINE Alu -15 295 36 1947 163 3 0 chr11 38177671 38177978 -112605575 - AluSx SINE Alu -4 308 1 465 281 43 30 chr11 38178799 38178963 -112604590 - MIR SINE MIR -38 224 59 2335 107 0 0 chr11 38179088 38179388 -112604165 - AluSc SINE Alu -9 300 1 1511 141 79 109 chr11 38180049 38180353 -112603200 + AluJb SINE Alu 3 297 -5 805 207 47 12 chr11 38180353 38180522 -112603031 - MER5A DNA MER1_type -14 175 1 624 279 31 6 chr11 38180544 38180705 -112602848 + MER5B DNA MER1_type 12 176 -2 684 286 6 11 chr11 38180713 38180895 -112602658 + MLT1J2 LTR MaLR 269 449 -1 640 295 141 36 chr11 38182002 38182508 -112601045 - MLT1K LTR MaLR -17 598 5 954 249 13 0 chr11 38183553 38183778 -112599775 + MIR SINE MIR 35 262 0 503 226 24 67 chr11 38184193 38184345 -112599208 + LTR37A LTR ERV1 18 162 -264 1895 203 136 80 chr11 38184345 38184582 -112598971 - MLT1E1 LTR MaLR 0 654 432 2164 118 0 13 chr11 38184582 38184897 -112598656 - AluY SINE Alu 0 311 1 1895 203 136 80 chr11 38184897 38185225 -112598328 - MLT1E1 LTR MaLR -222 432 57 2302 114 0 9 chr11 38185225 38185540 -112598013 + AluSx SINE Alu 1 312 0 290 148 222 0 chr11 38185573 38185627 -112597926 - MLT1E1 LTR MaLR -588 66 1 207 0 0 0 chr11 38185715 38185738 -112597815 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1558 185 20 33 chr11 38185744 38186047 -112597506 - AluJo SINE Alu -13 299 1 773 171 51 0 chr11 38186053 38186211 -112597342 + LTR37A LTR ERV1 255 420 -6 231 236 0 18 chr11 38186677 38186732 -112596821 + L2 LINE L2 3203 3256 -16 1630 155 39 10 chr11 38188159 38188468 -112595085 + MER33 DNA MER1_type 7 324 0 732 230 40 35 chr11 38188503 38188703 -112594850 - MER3 DNA MER1_type 0 209 9 1732 117 12 0 chr11 38188707 38188954 -112594599 + AluSg SINE Alu 56 305 -5 2301 100 0 3 chr11 38189005 38189305 -112594248 + AluSg SINE Alu 3 301 -9 2198 87 0 0 chr11 38190145 38190421 -112593132 + AluY SINE Alu 1 276 -35 281 136 0 0 chr11 38190421 38190465 -112593088 + AluY SINE Alu 252 295 -6 356 282 9 5 chr11 38190566 38190696 -112592857 - MIR SINE MIR -72 136 28 207 0 0 0 chr11 38191899 38191922 -112591631 + (T)n Simple_repeat Simple_repeat 1 23 0 2190 90 0 10 chr11 38191995 38192313 -112591240 + AluY SINE Alu 1 315 0 569 254 75 10 chr11 38192322 38192525 -112591028 - MIR SINE MIR -1 261 46 326 227 45 11 chr11 38192675 38192763 -112590790 - MLT1I LTR MaLR -4 405 315 496 278 23 15 chr11 38192773 38192898 -112590655 + MLT1G LTR MaLR 258 386 -204 2351 109 0 3 chr11 38192898 38193209 -112590344 - AluSq SINE Alu -3 310 1 1463 219 14 43 chr11 38193262 38193631 -112589922 + MLT1A2 LTR MaLR 1 358 -16 1533 159 3 65 chr11 38193637 38193946 -112589607 + AluJb SINE Alu 1 290 -22 638 210 112 0 chr11 38194011 38194154 -112589399 + MLT1A2 LTR MaLR 425 583 -7 460 224 96 0 chr11 38194195 38194320 -112589233 - L2 LINE L2 -1 3312 3176 1337 274 85 41 chr11 38194353 38194567 -112588986 - L1ME4a LINE L1 -3 6118 5915 2482 36 39 29 chr11 38194567 38194875 -112588678 - AluY SINE Alu 0 311 1 1337 274 85 41 chr11 38194875 38195317 -112588236 - L1ME4a LINE L1 -206 5915 5433 358 293 32 19 chr11 38195386 38195543 -112588010 + MIR SINE MIR 77 235 -27 302 129 52 164 chr11 38195760 38195876 -112587677 - MLT1H LTR MaLR -23 526 424 327 267 43 17 chr11 38196067 38196183 -112587370 - MLT1I LTR MaLR -272 137 19 247 97 0 0 chr11 38197665 38197696 -112585857 - Alu SINE Alu -246 55 25 1353 124 21 21 chr11 38197696 38197725 -112585828 + L1MA4A LINE L1 6067 6095 -208 2430 174 25 33 chr11 38197725 38198215 -112585338 + MER66B LTR ERV1 1 486 0 1353 124 21 21 chr11 38198215 38198419 -112585134 + L1MA4A LINE L1 6094 6300 -3 272 296 23 23 chr11 38199379 38199467 -112584086 + MIR SINE MIR 62 149 -113 3330 68 9 0 chr11 38199761 38200199 -112583354 + L1PB1 LINE L1 5709 6150 -1 550 268 115 14 chr11 38200224 38200433 -112583120 - MIR SINE MIR -24 238 9 2282 110 0 10 chr11 38200476 38200786 -112582767 + AluSq SINE Alu 1 307 -6 2186 122 0 28 chr11 38201935 38202256 -112581297 - AluSx SINE Alu 0 312 1 944 211 56 4 chr11 38202459 38202733 -112580820 - MER33 DNA MER1_type -41 283 1 422 259 42 48 chr11 38202902 38203068 -112580485 + L2 LINE L2 3148 3312 -1 376 316 65 24 chr11 38203086 38203254 -112580299 - MIR SINE MIR -74 188 14 372 43 0 0 chr11 38203295 38203341 -112580212 + (TG)n Simple_repeat Simple_repeat 1 46 0 381 192 0 0 chr11 38203841 38203914 -112579639 - MIR SINE MIR -6 256 184 2283 213 64 16 chr11 38203965 38204482 -112579071 - MLT1F LTR MaLR 0 542 1 748 253 5 5 chr11 38204513 38204707 -112578846 - MIR SINE MIR -1 261 68 2176 82 7 4 chr11 38205189 38205503 -112578050 + AluSg SINE Alu 1 315 0 480 188 31 0 chr11 38206290 38206386 -112577167 - L1ME1 LINE L1 -43 6123 6025 397 145 0 0 chr11 38206388 38206450 -112577103 - L1ME1 LINE L1 -392 5774 5713 504 260 153 0 chr11 38206755 38206905 -112576648 + MER5A DNA MER1_type 17 189 0 271 222 37 28 chr11 38207262 38207370 -112576183 + (CGGGG)n Simple_repeat Simple_repeat 3 111 0 26 36 0 0 chr11 38207475 38207503 -112576050 + GC_rich Low_complexity Low_complexity 1 28 0 36 23 0 0 chr11 38208105 38208148 -112575405 + GC_rich Low_complexity Low_complexity 1 43 0 201 121 0 0 chr11 38208417 38208450 -112575103 + (GGAGA)n Simple_repeat Simple_repeat 4 36 0 2016 112 51 10 chr11 38211161 38211457 -112572096 + AluSx SINE Alu 1 308 -4 297 0 0 0 chr11 38212371 38212404 -112571149 + (TG)n Simple_repeat Simple_repeat 1 33 0 659 207 141 35 chr11 38212696 38212894 -112570659 - MER20 DNA MER1_type 0 219 1 220 176 14 40 chr11 38214437 38214511 -112569042 + (TATATG)n Simple_repeat Simple_repeat 5 76 0 2264 95 3 10 chr11 38214735 38215039 -112568514 + AluSg SINE Alu 1 302 -8 1845 262 36 23 chr11 38215335 38215911 -112567642 - HsTC2 DNA Tc2 -1298 600 17 293 335 84 6 chr11 38216014 38216181 -112567372 - MIR SINE MIR -70 192 13 24 0 0 0 chr11 38217637 38217661 -112565892 + AT_rich Low_complexity Low_complexity 1 24 0 235 304 14 14 chr11 38218361 38218430 -112565123 + L2 LINE L2 3182 3250 -22 1880 117 0 0 chr11 38218930 38219197 -112564356 + AluSx SINE Alu 35 301 0 780 143 8 8 chr11 38220139 38220265 -112563288 + FLAM_A SINE Alu 1 126 -7 263 222 0 7 chr11 38220363 38220468 -112563085 + MER5A DNA MER1_type 14 189 0 450 283 113 30 chr11 38220471 38220661 -112562892 + MIR SINE MIR 12 226 -36 2338 74 3 55 chr11 38220661 38220986 -112562567 - AluY SINE Alu -3 308 1 450 283 113 30 chr11 38220986 38221025 -112562528 + MIR SINE MIR 226 260 -2 267 231 67 10 chr11 38221111 38221215 -112562338 - L1ME4a LINE L1 -169 5952 5843 2033 145 13 10 chr11 38221448 38221759 -112561794 + AluSx SINE Alu 1 312 0 563 294 55 29 chr11 38221810 38222048 -112561505 + L1ME4a LINE L1 5582 5825 -296 1021 192 35 10 chr11 38222055 38222258 -112561295 - MER3 DNA MER1_type 0 209 2 26 30 0 0 chr11 38223413 38223446 -112560107 + AT_rich Low_complexity Low_complexity 1 33 0 1823 155 0 48 chr11 38223573 38223883 -112559670 + AluSx SINE Alu 1 295 -17 728 270 88 72 chr11 38224066 38224518 -112559035 - L1ME3A LINE L1 -262 5902 5438 2199 94 3 3 chr11 38224518 38224827 -112558726 - AluSg1 SINE Alu 0 309 1 728 270 88 72 chr11 38224827 38224861 -112558692 - L1ME3A LINE L1 -726 5438 5406 438 324 71 13 chr11 38225267 38225492 -112558061 + MIR SINE MIR 15 252 -10 26 0 0 0 chr11 38225666 38225692 -112557861 + AT_rich Low_complexity Low_complexity 1 26 0 1371 62 11 0 chr11 38225692 38225869 -112557684 - L1MA2 LINE L1 -4 6300 6122 21 0 0 0 chr11 38227039 38227060 -112556493 + AT_rich Low_complexity Low_complexity 1 21 0 1903 189 62 46 chr11 38227117 38227571 -112555982 + LOR1b LTR ERV1 1 461 0 392 282 19 19 chr11 38228136 38228292 -112555261 - MIR SINE MIR -12 250 95 1905 156 7 7 chr11 38228641 38228936 -112554617 + AluJb SINE Alu 3 297 -15 2291 104 3 0 chr11 38230079 38230377 -112553176 + AluSg SINE Alu 1 299 -11 231 213 88 25 chr11 38234006 38234086 -112549467 - MIR SINE MIR -20 242 158 1664 238 57 9 chr11 38234086 38234523 -112549030 + MLT1C LTR MaLR 1 458 -9 374 219 0 0 chr11 38234551 38234633 -112548920 - MIR SINE MIR -111 151 70 1723 176 49 51 chr11 38235247 38235638 -112547915 + MLT1B LTR MaLR 1 390 0 2232 118 0 7 chr11 38236702 38237007 -112546546 + AluSx SINE Alu 1 303 -9 275 0 29 0 chr11 38237079 38237114 -112546439 + (TTTTG)n Simple_repeat Simple_repeat 1 36 0 1157 256 111 40 chr11 38237127 38237383 -112546170 - L1MC4a LINE L1 -751 5395 5539 1992 126 0 41 chr11 38237383 38237700 -112545853 - AluSx SINE Alu -4 308 5 1157 256 111 40 chr11 38237700 38238097 -112545456 - L1MC4a LINE L1 -606 5540 5172 1383 216 111 64 chr11 38238315 38238826 -112544727 - MLT1E LTR MaLR -11 582 3 286 242 88 11 chr11 38240564 38240655 -112542898 - L2 LINE L2 -31 3241 3144 216 67 0 0 chr11 38240771 38240801 -112542752 + (TG)n Simple_repeat Simple_repeat 2 31 0 1053 242 95 18 chr11 38241030 38241315 -112542238 - MLT1J LTR MaLR -98 413 107 1743 168 113 3 chr11 38241554 38241882 -112541671 - MLT1A1 LTR MaLR -1 364 1 234 214 276 0 chr11 38244065 38244163 -112539390 - MIR SINE MIR -21 241 117 21 0 0 0 chr11 38244647 38244668 -112538885 + AT_rich Low_complexity Low_complexity 1 21 0 525 274 51 6 chr11 38245186 38245361 -112538192 + MIR SINE MIR 14 196 -66 2128 165 38 65 chr11 38246006 38246480 -112537073 - MLT1C LTR MaLR -5 462 2 2306 118 0 0 chr11 38246782 38247087 -112536466 - AluSx SINE Alu -7 305 1 661 120 16 16 chr11 38247200 38247325 -112536228 + Charlie5 DNA MER1_type 2486 2610 -2 335 177 177 100 chr11 38247502 38247557 -112535996 + MLT1D LTR MaLR 48 97 -408 186 43 0 0 chr11 38247557 38247580 -112535973 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2174 80 29 7 chr11 38247583 38247858 -112535695 - AluSx SINE Alu -31 281 1 335 177 177 100 chr11 38247858 38247928 -112535625 + MLT1D LTR MaLR 98 187 -318 441 255 152 0 chr11 38248185 38248369 -112535184 - MIR SINE MIR -10 252 41 2381 89 7 0 chr11 38248560 38248863 -112534690 - AluSp SINE Alu -8 305 1 1412 178 56 24 chr11 38248865 38249152 -112534401 - AluJo SINE Alu -4 308 13 2832 78 0 22 chr11 38249479 38249849 -112533704 + THE1B LTR MaLR 3 364 0 427 281 111 59 chr11 38250406 38250712 -112532841 - MLT1I LTR MaLR 0 409 88 181 306 130 19 chr11 38250851 38250959 -112532594 + L2 LINE L2 3153 3272 0 5934 152 17 35 chr11 38251191 38251985 -112531568 - L1PA16 LINE L1 -9 6157 5350 1997 143 7 13 chr11 38251985 38252293 -112531260 - AluJb SINE Alu -6 306 1 5934 152 17 35 chr11 38252293 38252519 -112531034 - L1PA16 LINE L1 -816 5350 5122 2049 138 0 0 chr11 38252519 38252816 -112530737 - AluY SINE Alu -14 297 1 5934 152 17 35 chr11 38252816 38253866 -112529687 - L1PA16 LINE L1 -1044 5122 4123 215 313 89 47 chr11 38253959 38254117 -112529436 + MIR SINE MIR 34 205 -57 1946 186 36 43 chr11 38254117 38254359 -112529194 - MLT1C LTR MaLR -2 465 226 2061 107 31 24 chr11 38254359 38254649 -112528904 - AluSx SINE Alu -20 292 1 1946 186 36 43 chr11 38254649 38254874 -112528679 - MLT1C LTR MaLR -241 226 1 215 313 89 47 chr11 38254874 38254929 -112528624 + MIR SINE MIR 205 256 -6 336 24 0 0 chr11 38255797 38255838 -112527715 + (TG)n Simple_repeat Simple_repeat 2 42 0 2904 145 11 32 chr11 38256288 38256818 -112526735 + L1MB8 LINE L1 5659 6177 -1 243 282 38 84 chr11 38256981 38257112 -112526441 - MIR SINE MIR -59 149 25 543 144 189 0 chr11 38258069 38258159 -112525394 - Tigger1 DNA MER2_type -4 2414 2308 1070 72 0 0 chr11 38258161 38258299 -112525254 + AluY SINE Alu 173 310 -1 15251 127 14 3 chr11 38258299 38260583 -112522970 - Tigger1 DNA MER2_type -109 2309 1 260 290 58 36 chr11 38260879 38261017 -112522536 + MIR SINE MIR 78 218 -44 354 284 47 8 chr11 38261697 38261824 -112521729 - MIR SINE MIR -98 164 33 221 75 25 0 chr11 38262449 38262489 -112521064 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 334 348 9 0 chr11 38262897 38263012 -112520541 - L2 LINE L2 -2 3270 3155 231 247 0 65 chr11 38263014 38263091 -112520462 - L2 LINE L2 -1 3271 3200 443 330 58 15 chr11 38263850 38264109 -112519444 + L1MC4a LINE L1 5678 5949 -213 266 145 48 32 chr11 38264114 38264238 -112519315 + (TA)n Simple_repeat Simple_repeat 1 126 0 1271 32 0 6 chr11 38265136 38265292 -112518261 - L1PA4 LINE L1 -2 6153 5999 251 172 0 35 chr11 38265598 38265656 -112517897 - L1ME4a LINE L1 -56 6065 6010 315 0 0 0 chr11 38265692 38265727 -112517826 + (TG)n Simple_repeat Simple_repeat 1 35 0 374 217 63 28 chr11 38266017 38266160 -112517393 - L1ME4a LINE L1 -286 5835 5688 1918 128 179 16 chr11 38267637 38268005 -112515548 - MSTA LTR MaLR 0 428 1 9900 131 18 31 chr11 38268005 38269605 -112513948 - MSTA-int LTR MaLR 0 1580 3 1668 170 184 11 chr11 38269607 38269971 -112513582 - MSTA LTR MaLR 0 428 2 263 291 138 51 chr11 38270196 38270392 -112513161 + MIR SINE MIR 20 232 -30 441 265 96 41 chr11 38270495 38270714 -112512839 + MIR SINE MIR 12 242 -20 206 302 179 28 chr11 38271900 38272079 -112511474 + MIR SINE MIR 57 262 0 224 342 51 8 chr11 38274378 38274495 -112509058 + L2 LINE L2 2618 2739 -575 2261 112 3 0 chr11 38274743 38275038 -112508515 - AluSp SINE Alu -17 296 1 32 0 0 0 chr11 38275099 38275131 -112508422 + AT_rich Low_complexity Low_complexity 1 32 0 317 209 131 0 chr11 38275694 38275820 -112507733 + MIR SINE MIR 106 250 -12 4603 151 14 3 chr11 38276049 38276773 -112506780 - MER44D DNA MER2_type -1 604 1 3228 64 0 0 chr11 38277232 38277637 -112505916 - L1PA8 LINE L1 0 6172 5768 22 0 0 0 chr11 38278784 38278806 -112504747 + AT_rich Low_complexity Low_complexity 1 22 0 206 216 0 39 chr11 38279243 38279294 -112504259 + C-rich Low_complexity Low_complexity 3 51 0 721 254 44 4 chr11 38279433 38279661 -112503892 - L1ME3A LINE L1 -5 6165 5929 905 271 95 59 chr11 38280663 38280854 -112502699 - L1ME4a LINE L1 -158 5963 5780 8148 120 35 13 chr11 38280854 38281476 -112502077 - HSMAR2 DNA Mariner -1 1301 694 1921 115 49 11 chr11 38281476 38281762 -112501791 - AluSx SINE Alu -15 297 1 8148 120 35 13 chr11 38281762 38282411 -112501142 - HSMAR2 DNA Mariner -608 694 3 905 271 95 59 chr11 38282411 38282860 -112500693 - L1ME4a LINE L1 -341 5780 5300 24 53 0 0 chr11 38284190 38284228 -112499325 + AT_rich Low_complexity Low_complexity 1 38 0 346 286 197 63 chr11 38284719 38285562 -112497991 - L2 LINE L2 -528 2786 1831 1496 176 3 30 chr11 38285587 38285888 -112497665 - AluJb SINE Alu -19 293 1 276 258 30 0 chr11 38286507 38286599 -112496954 - MIR SINE MIR -47 161 64 202 283 172 0 chr11 38287373 38287472 -112496081 + MIR SINE MIR 33 148 -60 332 245 108 17 chr11 38287624 38287742 -112495811 - MIR3 SINE MIR -4 204 72 239 186 17 0 chr11 38288242 38288301 -112495252 + (TA)n Simple_repeat Simple_repeat 1 60 0 463 234 29 77 chr11 38288319 38288510 -112495043 - MIR SINE MIR -56 206 19 283 224 47 35 chr11 38289247 38289332 -112494221 - L1MC4 LINE L1 -30 8012 7927 2340 57 0 3 chr11 38289334 38289633 -112493920 - AluY SINE Alu -13 298 1 2240 105 0 0 chr11 38289719 38290023 -112493530 - AluSq SINE Alu -9 304 1 652 273 90 37 chr11 38290101 38290390 -112493163 - L1MD1 LINE L1 -278 5886 5614 4462 121 8 0 chr11 38290390 38291020 -112492533 + MER41B LTR ERV1 1 635 0 652 273 90 37 chr11 38291020 38291515 -112492038 - L1MD1 LINE L1 -550 5614 5060 219 239 0 0 chr11 38292136 38292182 -112491371 - MIR3 SINE MIR -3 205 160 305 273 68 0 chr11 38292199 38292287 -112491266 - L2 LINE L2 -1 3271 3178 324 270 110 10 chr11 38292425 38292525 -112491028 + MER58 DNA MER1_type 5 114 -227 * 1198 163 64 19 chr11 38292524 38292788 -112490765 + MER58 DNA MER1_type 2126 2401 -19 535 154 115 0 chr11 38292794 38292898 -112490655 + MIR SINE MIR 77 192 -70 2239 92 0 7 chr11 38292906 38293209 -112490344 + AluSc SINE Alu 1 301 -8 288 0 0 0 chr11 38294365 38294397 -112489156 + (TG)n Simple_repeat Simple_repeat 2 33 0 290 315 109 39 chr11 38295457 38295714 -112487839 - L2 LINE L2 -13 3259 2985 262 103 345 0 chr11 38295740 38295798 -112487755 + MADE1 DNA Mariner 3 80 0 2130 152 25 8 chr11 38295798 38296160 -112487393 - MLT1B LTR MaLR -22 368 1 395 317 154 32 chr11 38296247 38296446 -112487107 - L2 LINE L2 -457 2857 2684 1226 188 5 0 chr11 38296446 38296659 -112486894 - MER20 DNA MER1_type -1 218 5 395 317 154 32 chr11 38296659 38296771 -112486782 - L2 LINE L2 -630 2684 2508 2191 82 7 0 chr11 38296803 38297094 -112486459 - AluSq SINE Alu -20 293 1 364 282 68 18 chr11 38297695 38297858 -112485695 + MER117 DNA MER1_type 3 173 -24 341 314 168 34 chr11 38298080 38298402 -112485151 - L2 LINE L2 -530 2784 2420 222 352 40 24 chr11 38298674 38298799 -112484754 - L2 LINE L2 -213 3059 2933 237 296 56 14 chr11 38298982 38299053 -112484500 + L2 LINE L2 3193 3266 -6 213 342 139 38 chr11 38299441 38299599 -112483954 + MIR3 SINE MIR 34 207 -1 449 249 46 64 chr11 38299764 38299937 -112483616 - MIR SINE MIR -10 252 83 293 317 35 21 chr11 38300437 38300579 -112482974 - MIR SINE MIR -104 158 15 2042 116 3 3 chr11 38301240 38301534 -112482019 - AluSg SINE Alu -16 294 1 1418 164 7 37 chr11 38301857 38302126 -112481427 - AluJb SINE Alu -51 261 1 205 293 40 27 chr11 38302397 38302472 -112481081 + MIR SINE MIR 20 95 -113 2441 55 0 3 chr11 38302885 38303193 -112480360 - AluY SINE Alu -4 307 1 475 297 77 13 chr11 38303358 38303513 -112480040 + MIR SINE MIR 98 262 0 265 318 88 41 chr11 38304371 38304714 -112478839 - L1ME4a LINE L1 -217 5904 5546 26 64 0 0 chr11 38304790 38304837 -112478716 + AT_rich Low_complexity Low_complexity 1 47 0 355 272 88 41 chr11 38305131 38305278 -112478275 - MIR SINE MIR -15 247 94 1864 173 7 92 chr11 38306486 38306909 -112476644 + MLT1B LTR MaLR 3 389 -1 22 0 0 0 chr11 38306931 38306953 -112476600 + AT_rich Low_complexity Low_complexity 1 22 0 1797 169 0 0 chr11 38306953 38307243 -112476310 + AluSx SINE Alu 1 290 -22 1340 179 40 26 chr11 38307359 38307632 -112475921 + MLT1C LTR MaLR 1 277 -190 480 253 97 38 chr11 38308005 38308191 -112475362 + MIR SINE MIR 15 211 -51 984 161 21 16 chr11 38309267 38309453 -112474100 - MLT1C LTR MaLR -2 465 279 2512 74 15 87 chr11 38309484 38309673 -112473880 + THE1B LTR MaLR 1 202 -162 338 71 36 0 chr11 38309673 38309729 -112473824 - L1PB2 LINE L1 -4 6147 6090 3328 52 7 7 chr11 38309729 38310142 -112473411 - L1PA8 LINE L1 -5 6167 5749 2512 74 15 87 chr11 38310142 38310343 -112473210 + THE1B LTR MaLR 200 364 0 956 175 40 31 chr11 38310343 38310571 -112472982 - MLT1C LTR MaLR -186 281 52 28 0 0 0 chr11 38310811 38310839 -112472714 + AT_rich Low_complexity Low_complexity 1 28 0 396 284 45 7 chr11 38311048 38311203 -112472350 + Charlie8 DNA MER1_type 3 163 -2254 583 219 37 6 chr11 38311291 38311452 -112472101 + HsTC2 DNA Tc2 3 1898 0 537 270 190 5 chr11 38311579 38311790 -112471763 + MIR SINE MIR 9 258 -4 258 236 308 4 chr11 38311811 38311953 -112471600 + MIR SINE MIR 58 246 -16 1802 194 9 9 chr11 38314700 38315036 -112468517 - MLT1A1 LTR MaLR -29 336 1 999 229 48 0 chr11 38315256 38315487 -112468066 + MIR SINE MIR 15 256 -6 218 222 0 0 chr11 38315673 38315718 -112467835 + A-rich Low_complexity Low_complexity 130 174 0 359 301 38 38 chr11 38315850 38315983 -112467570 + MER5A DNA MER1_type 54 186 -3 238 173 19 0 chr11 38316390 38316442 -112467111 + L1ME4a LINE L1 5995 6047 -74 533 223 142 71 chr11 38316469 38316680 -112466873 + MIR SINE MIR 2 227 -35 203 362 0 14 chr11 38317314 38317383 -112466170 + L3 LINE CR1 1394 1461 -116 738 113 0 0 chr11 38318585 38318709 -112464844 + (TGGA)n Simple_repeat Simple_repeat 3 126 0 990 117 0 0 chr11 38318737 38318916 -112464637 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 1188 108 6 0 chr11 38319021 38319188 -112464365 - AluSg SINE Alu -142 168 1 646 281 100 0 chr11 38319219 38319429 -112464124 - MIR SINE MIR -30 232 2 444 215 203 19 chr11 38319774 38319932 -112463621 - MER5A DNA MER1_type 0 189 3 217 344 62 10 chr11 38319972 38320068 -112463485 - MER5A DNA MER1_type -22 167 67 315 295 23 23 chr11 38320363 38320492 -112463061 + L2 LINE L2 3167 3295 -18 598 214 65 126 chr11 38320549 38320658 -112462895 - MIR SINE MIR -47 215 124 2326 86 0 0 chr11 38320658 38320960 -112462593 + AluY SINE Alu 1 302 -9 598 214 65 126 chr11 38320960 38321065 -112462488 - MIR SINE MIR -138 124 14 300 277 135 20 chr11 38321534 38321682 -112461871 + MIR SINE MIR 83 247 -15 2026 124 0 7 chr11 38321728 38322026 -112461527 - AluSx SINE Alu -16 296 1 598 305 28 6 chr11 38322597 38322774 -112460779 - MIR SINE MIR -47 215 35 254 192 0 19 chr11 38322905 38322957 -112460596 - MER20 DNA MER1_type -3 216 166 2181 168 15 32 chr11 38322959 38323116 -112460437 - LOR1b LTR ERV1 0 461 303 2834 70 13 11 chr11 38323116 38323489 -112460064 + THE1C LTR MaLR 1 374 -1 2181 168 15 32 chr11 38323489 38323736 -112459817 - LOR1b LTR ERV1 -158 303 64 637 147 0 10 chr11 38323896 38323998 -112459555 - L1MB7 LINE L1 -84 6100 6000 184 323 136 15 chr11 38324157 38324355 -112459198 + L2 LINE L2 1851 2072 -1242 553 261 51 7 chr11 38324508 38324646 -112458907 + MIR SINE MIR 23 166 -96 613 300 71 76 chr11 38325255 38325353 -112458200 + L2 LINE L2 2444 2541 -773 905 221 53 0 chr11 38325353 38325561 -112457992 + MER20 DNA MER1_type 1 219 0 613 300 71 76 chr11 38325561 38325744 -112457809 + L2 LINE L2 2541 2725 -589 1548 196 31 0 chr11 38325744 38326035 -112457518 + AluJb SINE Alu 1 300 -12 613 300 71 76 chr11 38326035 38326132 -112457421 + L2 LINE L2 2725 2821 -493 2050 194 16 7 chr11 38326237 38326674 -112456879 - L1M4 LINE L1 -1445 4701 4261 1786 113 3 78 chr11 38326674 38326993 -112456560 - AluJb SINE Alu -17 295 1 2590 203 73 17 chr11 38327015 38327704 -112455849 - L1M4 LINE L1 -3092 3054 2328 301 211 18 0 chr11 38327722 38327779 -112455774 + MER5B DNA MER1_type 121 178 0 390 360 16 16 chr11 38329389 38329575 -112453978 + L2 LINE L2 2905 3090 -182 208 148 0 56 chr11 38329639 38329693 -112453860 + (TAA)n Simple_repeat Simple_repeat 2 52 0 203 244 26 13 chr11 38329737 38329815 -112453738 + (TATAA)n Simple_repeat Simple_repeat 5 83 0 643 313 15 0 chr11 38329831 38330026 -112453527 - MIR SINE MIR -27 235 38 1565 160 31 24 chr11 38330054 38330342 -112453211 - AluJb SINE Alu -22 290 1 557 360 15 0 chr11 38330691 38330888 -112452665 - MIR SINE MIR -15 247 48 2191 94 7 0 chr11 38330892 38331189 -112452364 - AluY SINE Alu -12 299 1 200 263 200 38 chr11 38332071 38332151 -112451402 + L2 LINE L2 2878 2970 -302 221 300 0 0 chr11 38333082 38333142 -112450411 + MER5A DNA MER1_type 108 167 -22 193 169 127 56 chr11 38333087 38333158 -112450395 - MER5A DNA MER1_type -101 88 13 * 279 304 202 16 chr11 38333744 38334001 -112449552 + L1ME4a LINE L1 5602 5906 -215 352 247 37 0 chr11 38334047 38334128 -112449425 - L2 LINE L2 -4 3309 3226 448 143 71 12 chr11 38334145 38334229 -112449324 + MER5A DNA MER1_type 13 101 -88 313 279 23 47 chr11 38334292 38334421 -112449132 + HAL1b LINE L1 1222 1347 -1 499 259 56 7 chr11 38334979 38335122 -112448431 + MIR3 SINE MIR 4 153 -55 381 301 208 6 chr11 38336289 38336462 -112447091 + MIR SINE MIR 51 258 -4 487 300 109 32 chr11 38336587 38337034 -112446519 - L2 LINE L2 -108 3205 2712 566 201 56 84 chr11 38337252 38337272 -112446281 - L1MD3 LINE L1 -447 7548 7529 2400 188 117 4 chr11 38337272 38337777 -112445776 + MER68 LTR ERV1 1 562 0 566 201 56 84 chr11 38337777 38338588 -112444965 - L1MD3 LINE L1 -466 7529 6697 438 20 0 0 chr11 38338588 38338639 -112444914 + (TCCA)n Simple_repeat Simple_repeat 2 52 0 566 201 56 84 chr11 38338639 38338768 -112444785 - L1MD3 LINE L1 -1298 6697 6566 2098 89 3 7 chr11 38338768 38339059 -112444494 - AluSg1 SINE Alu -19 290 1 566 201 56 84 chr11 38339059 38339700 -112443853 - L1MD3 LINE L1 -1429 6566 5910 4646 166 95 11 chr11 38339706 38341064 -112442489 - MER52A LTR ERV1 0 1755 211 324 247 13 13 chr11 38341487 38341564 -112441989 - MER52A LTR ERV1 -1678 77 1 195 125 0 0 chr11 38341732 38341772 -112441781 + (ATG)n Simple_repeat Simple_repeat 2 41 0 572 287 108 27 chr11 38341779 38341903 -112441650 - MIR SINE MIR -1 261 148 1728 173 116 3 chr11 38341903 38342238 -112441315 - MER83C LTR ERV1 0 373 1 572 287 108 27 chr11 38342238 38342336 -112441217 - MIR SINE MIR -114 148 21 665 280 68 38 chr11 38342853 38342988 -112440565 + MIR SINE MIR 15 161 -101 3183 174 9 26 chr11 38342988 38343558 -112439995 - MER68 LTR ERV1 -2 560 1 665 280 68 38 chr11 38343558 38343658 -112439895 + MIR SINE MIR 161 257 -5 456 286 107 17 chr11 38344321 38344499 -112439054 - MIR SINE MIR -6 256 63 1875 145 3 0 chr11 38344600 38344890 -112438663 + AluJb SINE Alu 1 291 -21 1792 170 55 0 chr11 38345383 38345712 -112437841 - L1MC1 LINE L1 -4 6329 5983 331 287 64 11 chr11 38345741 38345835 -112437718 - L1ME4a LINE L1 -31 6090 5992 195 307 11 23 chr11 38345856 38345944 -112437609 + MIR SINE MIR 170 256 -6 414 0 0 0 chr11 38346109 38346155 -112437398 + (CA)n Simple_repeat Simple_repeat 2 47 0 1687 158 13 30 chr11 38346294 38346597 -112436956 - AluJb SINE Alu -14 298 1 655 195 8 16 chr11 38346709 38346837 -112436716 + FLAM_A SINE Alu 1 127 -6 854 212 74 17 chr11 38346871 38347127 -112436426 + L1MC5 LINE L1 6986 7252 -735 4010 207 80 40 chr11 38347207 38347975 -112435578 - L1MDa LINE L1 -4252 2288 1451 1781 138 3 48 chr11 38347975 38348286 -112435267 - AluJb SINE Alu -10 302 6 4010 207 80 40 chr11 38348286 38348748 -112434805 - L1MDa LINE L1 -5089 1451 1009 1525 223 123 14 chr11 38349312 38349904 -112433649 + L1MC5 LINE L1 7261 7917 -44 1525 178 0 26 chr11 38350088 38350391 -112433162 - AluJb SINE Alu -17 295 1 762 178 0 0 chr11 38350408 38350526 -112433027 - FLAM_C SINE Alu -24 119 2 442 258 238 33 chr11 38351238 38351478 -112432075 + L2 LINE L2 3022 3310 -3 856 263 94 5 chr11 38351558 38351782 -112431771 - MIR SINE MIR -8 254 11 973 175 6 0 chr11 38351804 38351964 -112431589 - FRAM SINE Alu -5 161 1 1482 209 3 40 chr11 38351986 38352283 -112431270 - AluJo SINE Alu -15 287 2 844 291 73 4 chr11 38352291 38352525 -112431028 - MIR SINE MIR -1 261 12 183 42 0 0 chr11 38353850 38353874 -112429679 + (TCCC)n Simple_repeat Simple_repeat 3 26 0 661 168 98 60 chr11 38354642 38354670 -112428883 - L1MA4A LINE L1 -155 6150 6125 418 179 51 17 chr11 38354670 38354787 -112428766 - L1MA4A LINE L1 0 6303 6183 661 168 98 60 chr11 38354787 38354974 -112428579 - L1MA4A LINE L1 -180 6125 5932 23 0 0 0 chr11 38355676 38355699 -112427854 + AT_rich Low_complexity Low_complexity 1 23 0 2879 183 40 40 chr11 38355916 38356539 -112427014 - LTR27 LTR ERV1 -2 634 12 690 250 16 37 chr11 38356660 38356848 -112426705 + MER58A DNA MER1_type 38 221 -3 404 299 70 59 chr11 38356851 38356904 -112426649 - L1ME LINE L1 -368 5796 5745 1945 130 0 3 chr11 38356904 38357209 -112426344 - AluSx SINE Alu 0 304 1 404 299 70 59 chr11 38357209 38357284 -112426269 - L1ME LINE L1 -419 5745 5672 1458 185 25 3 chr11 38357284 38357570 -112425983 + AluJo SINE Alu 9 300 -12 404 299 70 59 chr11 38357570 38357745 -112425808 - L1ME LINE L1 -492 5672 5488 302 251 112 11 chr11 38357787 38357966 -112425587 - L1ME LINE L1 -753 5393 5197 653 249 17 33 chr11 38359035 38359216 -112424337 + MER45A DNA AcHobo 1 178 0 407 147 107 0 chr11 38359219 38359294 -112424259 - MIR SINE MIR -126 136 54 454 172 73 81 chr11 38359924 38360196 -112423357 + L1MA4A LINE L1 5950 6280 -23 248 317 19 43 chr11 38361358 38361519 -112422034 - L1ME LINE L1 -633 5488 5332 419 311 93 0 chr11 38361759 38361920 -112421633 - L1ME1 LINE L1 -230 5936 5761 514 229 49 8 chr11 38362324 38362446 -112421107 + MER5A DNA MER1_type 1 127 -62 521 211 31 39 chr11 38362447 38362575 -112420978 + MER5A DNA MER1_type 61 187 -2 2104 72 4 7 chr11 38362830 38363108 -112420445 - AluSc SINE Alu -32 277 1 2444 50 0 3 chr11 38364256 38364558 -112418995 - AluY SINE Alu -10 301 1 332 230 149 0 chr11 38365241 38365315 -112418238 + MLT1F1 LTR MaLR 1 85 -508 1521 132 13 9 chr11 38365333 38365603 -112417950 - L1MB2 LINE L1 -17 6172 5902 2334 56 0 10 chr11 38365607 38365909 -112417644 - AluY SINE Alu -12 299 1 1281 108 11 0 chr11 38366170 38366356 -112417197 - L1MB2 LINE L1 -287 5896 5709 1514 220 101 45 chr11 38366368 38366832 -112416721 + MLT1F1 LTR MaLR 78 567 0 598 308 39 5 chr11 38366944 38367152 -112416401 - MIR SINE MIR 0 262 48 306 0 0 0 chr11 38367576 38367610 -112415943 + (TG)n Simple_repeat Simple_repeat 1 34 0 231 36 0 0 chr11 38367609 38367637 -112415916 + (GA)n Simple_repeat Simple_repeat 1 28 0 * 2825 150 9 13 chr11 38367784 38368245 -112415308 + MLT1C LTR MaLR 9 467 0 315 231 41 74 chr11 38369403 38369524 -112414029 + MLT1H LTR MaLR 431 547 -2 2243 104 16 0 chr11 38369554 38369862 -112413691 - AluSq SINE Alu 0 313 1 2034 154 52 0 chr11 38369885 38370215 -112413338 + MER7A DNA MER2_type 2 346 0 613 186 11 85 chr11 38370270 38370395 -112413158 - MER104 DNA Tc2 -1718 180 72 2420 56 0 31 chr11 38370395 38370715 -112412838 + AluY SINE Alu 1 310 -1 613 186 11 85 chr11 38370715 38370777 -112412776 - MER104 DNA Tc2 -1826 72 7 393 306 63 81 chr11 38370781 38371114 -112412439 - L2 LINE L2 -71 3201 2875 973 394 116 16 chr11 38371164 38371552 -112412001 - MER31B LTR ERV1 -39 427 1 199 294 78 114 chr11 38372960 38373320 -112410233 - L2 LINE L2 0 3272 2926 2131 103 3 0 chr11 38373921 38374223 -112409330 - AluSg1 SINE Alu -6 303 1 398 261 0 106 chr11 38375771 38375951 -112407602 - MLT1J LTR MaLR -260 251 91 354 225 0 50 chr11 38375954 38375999 -112407554 - MLT1G LTR MaLR -417 173 132 2148 120 0 0 chr11 38375999 38376300 -112407253 - AluSx SINE Alu -11 301 1 354 225 0 50 chr11 38376300 38376334 -112407219 - MLT1G LTR MaLR -458 132 98 1007 257 99 27 chr11 38377174 38377680 -112405873 + MLT1G LTR MaLR 1 589 -1 227 220 20 0 chr11 38378112 38378162 -112405391 - L2 LINE L2 -31 3241 3191 394 204 129 0 chr11 38378289 38378382 -112405171 + MIR SINE MIR 18 122 -140 34 0 0 0 chr11 38378994 38379028 -112404525 + AT_rich Low_complexity Low_complexity 1 34 0 2042 101 3 52 chr11 38379157 38379484 -112404069 - AluSx SINE Alu -1 311 1 350 276 82 35 chr11 38380357 38380527 -112403026 + MER20 DNA MER1_type 35 212 -7 493 312 0 14 chr11 38380532 38380673 -112402880 - MIR3 SINE MIR -51 157 19 243 88 0 0 chr11 38380839 38380873 -112402680 + (GA)n Simple_repeat Simple_repeat 1 34 0 1473 184 27 36 chr11 38380992 38381323 -112402230 - L1MB8 LINE L1 0 6178 5851 977 102 32 91 chr11 38381328 38381514 -112402039 + MER30B DNA MER1_type 1 175 -15 2486 170 28 36 chr11 38381550 38382444 -112401109 - L1MB8 LINE L1 -433 5745 4861 301 238 16 0 chr11 38382745 38382808 -112400745 - MIR SINE MIR -19 243 180 559 256 36 0 chr11 38382874 38383011 -112400542 - MIR SINE MIR -89 173 32 1854 185 47 9 chr11 38383048 38383389 -112400164 + MLT1A1 LTR MaLR 1 354 -11 208 286 171 0 chr11 38383398 38383468 -112400085 + L2 LINE L2 3224 3305 -8 620 234 122 45 chr11 38384590 38384812 -112398741 - MIR SINE MIR -15 247 9 394 237 114 23 chr11 38385075 38385206 -112398347 + MIR SINE MIR 107 249 -13 276 285 108 15 chr11 38385253 38385383 -112398170 - L2 LINE L2 -12 3301 3160 786 168 0 42 chr11 38385428 38385571 -112397982 + FLAM_C SINE Alu 2 138 -5 1616 153 0 52 chr11 38385591 38385879 -112397674 + AluJo SINE Alu 12 310 0 235 0 0 0 chr11 38385879 38385905 -112397648 + (TAA)n Simple_repeat Simple_repeat 2 180 0 345 276 21 55 chr11 38386189 38386334 -112397219 - MLT1H LTR MaLR -381 168 29 583 221 67 13 chr11 38387026 38387175 -112396378 - MIR SINE MIR -27 235 79 434 327 132 33 chr11 38387247 38387371 -112396182 + L2 LINE L2 2752 2862 -410 1869 118 0 0 chr11 38387371 38387641 -112395912 - AluSx SINE Alu -1 311 42 434 327 132 33 chr11 38387641 38387932 -112395621 + L2 LINE L2 2862 3222 -50 749 235 131 23 chr11 38387939 38388160 -112395393 + MIR SINE MIR 8 252 -10 230 243 108 27 chr11 38388159 38388233 -112395320 + L2 LINE L2 3234 3313 0 * 23 33 0 0 chr11 38389907 38389937 -112393616 + AT_rich Low_complexity Low_complexity 1 30 0 501 242 85 18 chr11 38390080 38390245 -112393308 + MIR SINE MIR 80 255 -7 368 226 212 7 chr11 38390357 38390494 -112393059 - MIR SINE MIR -25 237 73 201 74 0 0 chr11 38390805 38390832 -112392721 + (TA)n Simple_repeat Simple_repeat 1 27 0 1940 164 0 0 chr11 38391257 38391569 -112391984 + AluSx SINE Alu 1 312 0 277 326 126 19 chr11 38391571 38391786 -112391767 - L2 LINE L2 -619 2695 2458 764 273 130 28 chr11 38392431 38392753 -112390800 + L2 LINE L2 2955 3309 -4 288 252 130 23 chr11 38392888 38393019 -112390534 - L2 LINE L2 -220 3052 2908 329 278 57 91 chr11 38393371 38393580 -112389973 - MIR SINE MIR -37 225 24 477 167 33 0 chr11 38394283 38394373 -112389180 - L1MB3 LINE L1 -7 6176 6084 726 235 18 18 chr11 38395116 38395286 -112388267 - MIR SINE MIR -21 241 72 496 245 82 65 chr11 38395518 38395763 -112387790 + MIR SINE MIR 4 252 -10 245 135 0 58 chr11 38395889 38395941 -112387612 - Alu SINE Alu 0 133 85 1005 150 59 59 chr11 38395941 38396034 -112387519 - AluJo SINE Alu -92 220 128 465 19 0 0 chr11 38396034 38396088 -112387465 + (TTTTC)n Simple_repeat Simple_repeat 2 55 0 1005 150 59 59 chr11 38396088 38396214 -112387339 - AluJo SINE Alu -183 129 1 2200 63 47 13 chr11 38396227 38396527 -112387026 - AluY SINE Alu -1 310 1 244 254 18 0 chr11 38396661 38396716 -112386837 + (CATATA)n Simple_repeat Simple_repeat 3 58 0 2215 102 3 0 chr11 38398317 38398622 -112384931 + AluSx SINE Alu 1 306 -6 499 285 101 50 chr11 38398910 38399041 -112384512 - MIR SINE MIR -19 243 99 2475 129 53 26 chr11 38399041 38399387 -112384166 + MSTA LTR MaLR 1 361 -67 1935 144 14 0 chr11 38399387 38399679 -112383874 - AluSx SINE Alu -16 296 1 2475 129 53 26 chr11 38399679 38399749 -112383804 + MSTA LTR MaLR 361 428 0 499 285 101 50 chr11 38399749 38399796 -112383757 - MIR SINE MIR -163 99 56 698 251 130 13 chr11 38400829 38401060 -112382493 + MIR SINE MIR 5 262 0 738 241 98 6 chr11 38401784 38401958 -112381595 - MER20 DNA MER1_type 0 219 30 364 235 235 17 chr11 38402222 38402341 -112381212 - MIR SINE MIR -46 216 72 251 312 136 8 chr11 38402998 38403123 -112380430 + L1MC/D LINE L1 5668 5808 -2000 1798 137 29 0 chr11 38403130 38403408 -112380145 - AluJb SINE Alu -25 287 2 402 21 0 0 chr11 38403678 38403725 -112379828 + (TC)n Simple_repeat Simple_repeat 1 47 0 443 336 49 22 chr11 38405378 38405601 -112377952 - Charlie8 DNA MER1_type -2169 248 20 547 271 119 5 chr11 38405696 38405906 -112377647 - MIR SINE MIR -4 258 25 1010 178 10 59 chr11 38406298 38406590 -112376963 - MLT1B LTR MaLR 0 390 51 5982 73 21 6 chr11 38406590 38407441 -112376112 + SVA Other Other 3 866 -520 1192 39 5 29 chr11 38407456 38407663 -112375890 + SVA Other Other 665 866 -520 928 102 12 74 chr11 38407680 38407936 -112375617 + SVA Other Other 549 788 -598 6277 38 12 3 chr11 38408083 38408827 -112374726 + SVA Other Other 635 1385 -1 359 148 0 16 chr11 38408827 38408888 -112374665 - MLT1B LTR MaLR -330 60 1 1722 184 26 113 chr11 38409278 38409576 -112373977 - MLT1C LTR MaLR 0 467 145 240 35 0 0 chr11 38409576 38409605 -112373948 + (TTTTA)n Simple_repeat Simple_repeat 4 32 0 1682 174 7 0 chr11 38409611 38409893 -112373660 - AluSx SINE Alu -28 284 1 1722 184 26 113 chr11 38409893 38409905 -112373648 - MLT1C LTR MaLR -327 140 129 2498 67 0 3 chr11 38409905 38410217 -112373336 - AluY SINE Alu 0 311 1 1722 184 26 113 chr11 38410217 38410403 -112373150 - MLT1C LTR MaLR -338 129 7 2157 109 6 0 chr11 38410658 38410969 -112372584 - AluSq SINE Alu 0 313 1 247 306 131 79 chr11 38411772 38412001 -112371552 - L2 LINE L2 0 3272 3032 1681 171 0 10 chr11 38413048 38413346 -112370207 + AluJo SINE Alu 4 298 -14 1680 89 0 8 chr11 38413348 38413583 -112369970 + AluY SINE Alu 78 310 -1 185 337 112 0 chr11 38413868 38413966 -112369587 + L2 LINE L2 2918 3026 -246 213 250 0 0 chr11 38414126 38414166 -112369387 - MER91 DNA MER1_type -25 115 76 481 281 121 21 chr11 38414185 38414389 -112369164 - MIR SINE MIR -34 228 4 571 249 41 86 chr11 38415088 38415285 -112368268 - MIR3 SINE MIR -1 207 20 958 208 11 0 chr11 38415534 38415717 -112367836 + MER68 LTR ERV1 376 560 -2 322 282 99 14 chr11 38415806 38415948 -112367605 + MIR SINE MIR 30 183 -79 246 279 192 0 chr11 38415978 38416082 -112367471 + L2 LINE L2 3186 3309 -4 282 293 50 57 chr11 38416819 38416959 -112366594 + MIR3 SINE MIR 29 167 -41 299 250 226 0 chr11 38417274 38417398 -112366155 - MER103 DNA DNA -7 159 8 739 243 32 26 chr11 38418308 38418497 -112365056 + MIR SINE MIR 45 234 -28 252 237 66 13 chr11 38418527 38418603 -112364950 + L2 LINE L2 3188 3267 -5 344 167 0 50 chr11 38418811 38418871 -112364682 + MER5B DNA MER1_type 2 58 -120 946 284 42 85 chr11 38421092 38421539 -112362014 + L2 LINE L2 2886 3313 0 1345 124 81 15 chr11 38421588 38421847 -112361706 - L1MA6 LINE L1 0 6300 6025 1504 190 3 7 chr11 38421985 38422280 -112361273 + AluJb SINE Alu 1 294 -18 1480 146 37 48 chr11 38422282 38422576 -112360977 + AluJb SINE Alu 1 291 -21 245 330 41 10 chr11 38423500 38423597 -112359956 - MIR SINE MIR -67 141 42 2193 82 0 0 chr11 38423613 38423894 -112359659 - AluSq SINE Alu -32 281 1 389 278 33 20 chr11 38423998 38424149 -112359404 - MIR SINE MIR -4 258 106 241 259 0 12 chr11 38424235 38424316 -112359237 + (TA)n Simple_repeat Simple_repeat 2 81 0 229 175 0 25 chr11 38424321 38424361 -112359192 - L2 LINE L2 -82 3231 3193 279 0 0 0 chr11 38424375 38424406 -112359147 + (TGGA)n Simple_repeat Simple_repeat 2 32 0 251 190 17 0 chr11 38426501 38426559 -112356994 + GA-rich Low_complexity Low_complexity 1 59 0 935 283 113 38 chr11 38427756 38428392 -112355161 - L1ME4a LINE L1 -6 6115 5432 441 125 0 31 chr11 38428741 38428837 -112354716 + (TCCC)n Simple_repeat Simple_repeat 1 93 0 595 242 176 0 chr11 38429532 38429685 -112353868 - MER5A DNA MER1_type 0 189 10 414 141 152 20 chr11 38429716 38429815 -112353738 + MLT1C LTR MaLR 6 117 -350 2061 162 63 33 chr11 38429821 38430217 -112353336 - MLT2D LTR ERVL -5 409 2 1285 189 37 109 chr11 38430217 38430595 -112352958 + MLT1C LTR MaLR 118 466 -1 270 81 0 0 chr11 38431275 38431312 -112352241 + (T)n Simple_repeat Simple_repeat 1 37 0 4170 125 20 20 chr11 38431949 38432653 -112350900 - L1MA4 LINE L1 -5 6295 5592 2590 116 0 5 chr11 38432664 38433034 -112350519 - L1PB1 LINE L1 -1 6866 6499 225 119 0 0 chr11 38433036 38433078 -112350475 + LTR66 LTR ERVL 398 439 -171 249 159 0 0 chr11 38433078 38433122 -112350431 + (TA)n Simple_repeat Simple_repeat 2 45 0 235 133 0 0 chr11 38433123 38433168 -112350385 - LTR66 LTR ERVL -172 438 394 9276 179 8 24 chr11 38433170 38433601 -112349952 - L1PB1 LINE L1 -361 6506 6069 2115 92 0 0 chr11 38433601 38433883 -112349670 - AluSc SINE Alu -11 298 17 9276 179 8 24 chr11 38433883 38435986 -112347567 - L1PB1 LINE L1 -798 6069 4008 4850 32 0 0 chr11 38435987 38436545 -112347008 - L1PA5 LINE L1 -1 6153 5596 6774 52 11 16 chr11 38436555 38437483 -112346070 + L1P2 LINE L1 4534 5461 -693 2405 84 7 3 chr11 38437483 38437793 -112345760 + AluY SINE Alu 1 311 0 6774 52 11 16 chr11 38437793 38437952 -112345601 + L1P2 LINE L1 5461 5619 -535 * 10667 132 41 11 chr11 38437938 38440586 -112342967 - L1PB1 LINE L1 -2837 4025 1292 876 109 159 0 chr11 38440591 38440729 -112342824 - L1PB1 LINE L1 -5705 1158 999 1296 109 0 0 chr11 38440744 38440937 -112342616 - L1PB1 LINE L1 -6670 193 1 189 290 48 97 chr11 38441913 38441973 -112341580 - MER5A DNA MER1_type -51 138 77 2240 123 0 0 chr11 38441973 38442265 -112341288 + AluSx SINE Alu 1 292 -20 189 290 48 97 chr11 38442265 38442349 -112341204 - MER5A DNA MER1_type -112 77 1 211 329 92 0 chr11 38442416 38442492 -112341061 + MIR SINE MIR 121 203 -59 1757 156 13 25 chr11 38442492 38442807 -112340746 + AluJo SINE Alu 1 311 -1 435 285 8 8 chr11 38443110 38443233 -112340320 - L2 LINE L2 -3 3310 3188 1182 243 53 57 chr11 38443279 38443802 -112339751 - L2 LINE L2 -455 2859 2339 417 258 107 21 chr11 38444121 38444333 -112339220 - MIR SINE MIR -26 236 18 264 161 0 0 chr11 38444657 38444719 -112338834 + CT-rich Low_complexity Low_complexity 2 63 0 272 327 19 0 chr11 38446389 38446496 -112337057 + MER5A DNA MER1_type 54 162 -27 1095 241 34 100 chr11 38446530 38446746 -112336807 - L1MEd LINE L1 -5025 1094 865 2278 110 7 0 chr11 38446746 38447047 -112336506 - AluSp SINE Alu -10 303 1 1095 241 34 100 chr11 38447047 38447452 -112336101 - L1MEd LINE L1 -5254 865 514 827 267 56 16 chr11 38448816 38449067 -112334486 + MIR SINE MIR 1 261 -1 413 204 43 0 chr11 38449561 38449654 -112333899 + L1ME2 LINE L1 6068 6164 0 210 281 12 12 chr11 38450076 38450158 -112333395 + (TA)n Simple_repeat Simple_repeat 1 82 0 1990 269 111 28 chr11 38450999 38451709 -112331844 + HAL1 LINE L1 2 770 -1737 372 121 190 43 chr11 38451729 38451845 -112331708 - L1MB7 LINE L1 0 6184 6046 452 216 14 68 chr11 38451869 38451945 -112331608 - L1MB7 LINE L1 -83 6101 6035 2335 109 7 0 chr11 38451945 38452249 -112331304 + AluSx SINE Alu 1 306 -6 452 216 14 68 chr11 38452249 38452320 -112331233 - L1MB7 LINE L1 -149 6035 5962 3210 42 0 0 chr11 38452320 38452699 -112330854 - L1PA5 LINE L1 0 6154 5776 421 141 22 87 chr11 38452699 38452791 -112330762 + HAL1 LINE L1 804 889 -1618 195 184 0 0 chr11 38452805 38452843 -112330710 + G-rich Low_complexity Low_complexity 1 38 0 1352 189 0 21 chr11 38453011 38453249 -112330304 + AluJo SINE Alu 58 290 -22 2843 244 138 51 chr11 38453261 38454003 -112329550 + HAL1 LINE L1 1107 1783 -724 1692 141 4 36 chr11 38454003 38454280 -112329273 + AluJo SINE Alu 11 278 -34 369 0 0 0 chr11 38454280 38454321 -112329232 + (TC)n Simple_repeat Simple_repeat 2 42 0 180 0 0 0 chr11 38454320 38454340 -112329213 + (TA)n Simple_repeat Simple_repeat 1 20 0 2843 244 138 51 chr11 38454321 38454339 -112329214 + HAL1 LINE L1 1783 1798 -709 234 91 0 0 chr11 38454339 38454372 -112329181 + (CA)n Simple_repeat Simple_repeat 2 34 0 2843 244 138 51 chr11 38454372 38454917 -112328636 + HAL1 LINE L1 1798 2507 0 667 262 0 18 chr11 38455591 38455755 -112327798 + MIR SINE MIR 8 168 -94 516 291 33 0 chr11 38455820 38456002 -112327551 + MIR SINE MIR 75 262 0 337 263 8 34 chr11 38456546 38456664 -112326889 + MIR SINE MIR 8 122 -140 207 231 0 39 chr11 38456677 38456729 -112326824 - MIR SINE MIR -94 168 119 303 331 41 0 chr11 38456915 38457077 -112326476 - MLT1J2 LTR MaLR -6 409 281 * 501 241 23 23 chr11 38457068 38457201 -112326352 - MLT1I LTR MaLR -276 133 1 246 363 22 30 chr11 38457797 38457932 -112325621 - L2 LINE L2 -1 3271 3138 458 305 72 47 chr11 38457940 38458176 -112325377 + MIR SINE MIR 13 254 -8 213 94 0 0 chr11 38458187 38458219 -112325334 + (CAT)n Simple_repeat Simple_repeat 2 33 0 327 315 144 0 chr11 38460386 38460532 -112323021 + MIR SINE MIR 2 168 -94 205 191 24 0 chr11 38460579 38460621 -112322932 + (CTG)n Simple_repeat Simple_repeat 1 43 0 1361 188 11 14 chr11 38460772 38461048 -112322505 + AluJo SINE Alu 1 275 -37 452 167 0 24 chr11 38461330 38461414 -112322139 + FRAM SINE Alu 71 152 -24 2386 80 3 0 chr11 38462253 38462555 -112320998 - AluY SINE Alu -8 303 1 228 67 0 0 chr11 38462922 38462952 -112320601 + (CA)n Simple_repeat Simple_repeat 2 31 0 1406 172 95 37 chr11 38463200 38463239 -112320314 - MLT1A2 LTR MaLR -6 368 333 2076 135 3 13 chr11 38463239 38463550 -112320003 + AluSx SINE Alu 1 308 -4 1406 172 95 37 chr11 38463550 38463858 -112319695 - MLT1A2 LTR MaLR -41 333 1 335 274 40 16 chr11 38464007 38464131 -112319422 + MIR SINE MIR 55 181 -81 2081 119 24 0 chr11 38465398 38465691 -112317862 - AluSq SINE Alu -12 301 2 195 286 18 0 chr11 38465856 38465912 -112317641 - MIR SINE MIR -155 107 51 601 219 19 113 chr11 38466231 38466294 -112317259 - MIR SINE MIR -10 252 185 1639 142 0 103 chr11 38466294 38466624 -112316929 - AluJo SINE Alu -6 296 1 601 219 19 113 chr11 38466624 38466816 -112316737 - MIR SINE MIR -77 185 21 220 213 0 0 chr11 38467667 38467714 -112315839 - MIR SINE MIR -128 134 88 2130 116 30 3 chr11 38467842 38468143 -112315410 - AluSq SINE Alu -4 309 1 2249 108 3 3 chr11 38470075 38470380 -112313173 - AluSg SINE Alu -5 305 1 726 244 105 66 chr11 38470408 38470740 -112312813 - MLT1F1 LTR MaLR -122 445 101 1199 200 96 4 chr11 38470744 38470984 -112312569 + AluJb SINE Alu 1 262 -50 203 296 25 0 chr11 38471174 38471255 -112312298 - L2 LINE L2 -468 2846 2764 785 171 21 88 chr11 38471412 38471605 -112311948 + L1MD3 LINE L1 6800 6979 -1016 931 241 51 83 chr11 38471607 38471981 -112311572 - MLT1A1 LTR MaLR 0 365 4 2459 208 149 31 chr11 38471988 38472708 -112310845 + L1MC4a LINE L1 6111 6182 -60 2538 79 0 0 chr11 38472708 38473012 -112310541 - AluSg SINE Alu -6 304 1 2459 208 149 31 chr11 38473012 38473082 -112310471 + L1MC4a LINE L1 6182 6242 0 21 0 0 0 chr11 38473415 38473436 -112310117 + AT_rich Low_complexity Low_complexity 1 21 0 191 228 18 0 chr11 38473520 38473577 -112309976 + L2 LINE L2 3215 3272 0 792 231 12 12 chr11 38474463 38474632 -112308921 - MER58A DNA MER1_type -36 188 20 486 361 37 11 chr11 38474685 38475016 -112308537 - L2 LINE L2 -499 2815 2431 456 70 0 0 chr11 38475865 38475922 -112307631 + AluJb SINE Alu 240 296 -16 331 223 18 0 chr11 38476381 38476493 -112307060 + CT-rich Low_complexity Low_complexity 5 118 0 380 253 0 0 chr11 38478029 38478124 -112305429 + MIR SINE MIR 45 139 -69 973 253 135 10 chr11 38478241 38478786 -112304767 - L2 LINE L2 -48 3265 2640 318 222 0 0 chr11 38479721 38479784 -112303769 - MER103 DNA DNA -44 122 60 768 260 27 14 chr11 38479793 38480012 -112303541 - MIR SINE MIR -1 261 40 318 289 11 0 chr11 38480304 38480394 -112303159 + MIR SINE MIR 26 116 -146 260 187 39 213 chr11 38480758 38480913 -112302640 + MIR SINE MIR 16 143 -119 2070 163 54 50 chr11 38480930 38481390 -112302163 - MLT1C LTR MaLR 0 467 6 524 238 10 2 chr11 38482122 38482251 -112301302 + L1MC/D LINE L1 5682 5811 -365 665 207 0 0 chr11 38482377 38482488 -112301065 + MER58A DNA MER1_type 8 118 0 410 165 0 93 chr11 38482488 38482563 -112300990 + MER58 DNA MER1_type 2355 2420 0 24 32 0 0 chr11 38482642 38482673 -112300880 + AT_rich Low_complexity Low_complexity 1 31 0 3012 200 54 97 chr11 38482706 38484258 -112299295 + L1ME1 LINE L1 4687 6161 -5 2045 108 3 67 chr11 38484418 38484732 -112298821 + AluSx SINE Alu 1 294 -18 749 183 15 0 chr11 38484874 38485005 -112298548 + FLAM_A SINE Alu 1 133 0 520 285 33 23 chr11 38485201 38485415 -112298138 - L1MC4a LINE L1 -1898 5910 5695 1809 151 3 50 chr11 38485420 38485737 -112297816 - AluJo SINE Alu -10 302 1 481 254 36 104 chr11 38485741 38485961 -112297592 - L1MC4a LINE L1 -2190 5618 5414 681 266 27 0 chr11 38486019 38486203 -112297350 - MER91B DNA MER1_type -1 189 1 1609 170 43 4 chr11 38486799 38487076 -112296477 + AluJo SINE Alu 1 288 -24 795 168 61 82 chr11 38486919 38487115 -112296438 + AluJb SINE Alu 121 312 0 637 86 7 139 chr11 38487269 38487420 -112296133 + L1MB4 LINE L1 6040 6170 -10 50 0 0 0 chr11 38487420 38487470 -112296083 + AT_rich Low_complexity Low_complexity 1 50 0 431 290 41 73 chr11 38487494 38487739 -112295814 - MIR SINE MIR -3 259 23 364 251 49 53 chr11 38488190 38488323 -112295230 + MIR SINE MIR 42 171 -66 530 118 0 0 chr11 38488358 38488434 -112295119 - L2 LINE L2 -14 3299 3224 523 289 28 33 chr11 38488932 38489112 -112294441 + MIR SINE MIR 4 182 -80 1889 115 18 4 chr11 38489141 38489449 -112294104 + AluSx SINE Alu 1 312 0 451 246 197 11 chr11 38489507 38489690 -112293863 - MIR SINE MIR -44 218 2 2391 186 24 14 chr11 38489861 38490361 -112293192 - L1MB7 LINE L1 0 6184 5680 248 254 0 0 chr11 38490935 38490990 -112292563 - MIR SINE MIR -50 212 158 230 204 0 37 chr11 38490994 38491048 -112292505 + L1MB8 LINE L1 6044 6095 -83 341 211 0 14 chr11 38491049 38491120 -112292433 - MIR SINE MIR -116 146 77 202 339 0 0 chr11 38491202 38491258 -112292295 + L2 LINE L2 3258 3313 0 898 296 4 8 chr11 38491737 38491987 -112291566 + MIR SINE MIR 2 250 -12 249 139 0 0 chr11 38494643 38494686 -112288867 + (GAAA)n Simple_repeat Simple_repeat 2 44 0 26 74 0 0 chr11 38495018 38495072 -112288481 + AT_rich Low_complexity Low_complexity 1 54 0 2125 61 0 61 chr11 38496277 38496573 -112286980 - AluY SINE Alu -12 299 22 401 241 25 96 chr11 38496819 38497018 -112286535 - MLT1K LTR MaLR -3 585 401 755 232 33 50 chr11 38497996 38498237 -112285316 - MLT1J1 LTR MaLR -185 261 25 273 29 0 0 chr11 38498456 38498490 -112285063 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 1619 179 0 0 chr11 38498490 38498770 -112284783 - AluJb SINE Alu -32 280 1 326 275 25 17 chr11 38498907 38499027 -112284526 + L2 LINE L2 2853 2973 -341 498 296 71 30 chr11 38499725 38499992 -112283561 - MLT2E LTR ERVL 0 628 351 374 270 113 0 chr11 38500039 38500154 -112283399 + LTR67 LTR ERVL 430 557 0 316 315 70 28 chr11 38500178 38500321 -112283232 + MIR3 SINE MIR 19 167 -41 2266 110 131 11 chr11 38500560 38500942 -112282611 + MSTA LTR MaLR 1 428 0 325 329 99 24 chr11 38501048 38501117 -112282436 - MIR SINE MIR 0 262 200 857 205 83 5 chr11 38501117 38501322 -112282231 + MER58A DNA MER1_type 1 221 -3 325 329 99 24 chr11 38501322 38501465 -112282088 - MIR SINE MIR -62 200 34 1471 151 59 46 chr11 38502162 38502466 -112281087 - AluJo SINE Alu 0 312 5 189 243 0 0 chr11 38502858 38502895 -112280658 + MIR SINE MIR 108 144 -118 917 225 29 32 chr11 38503486 38503743 -112279810 - MIR SINE MIR -6 256 2 325 263 20 50 chr11 38504548 38504647 -112278906 + MIR SINE MIR 16 111 -97 260 307 111 26 chr11 38504818 38504971 -112278582 - L2 LINE L2 -2 3270 3105 1028 276 122 35 chr11 38505015 38505476 -112278077 - MLT1J LTR MaLR -8 503 3 1257 274 125 22 chr11 38505653 38506116 -112277437 - LTR33A LTR ERVL -11 512 2 2287 193 88 4 chr11 38506304 38506770 -112276783 - MLT1D LTR MaLR 0 505 1 392 270 52 65 chr11 38507194 38507424 -112276129 - MLT1J LTR MaLR -175 336 110 387 272 10 10 chr11 38507785 38507888 -112275665 - MIR SINE MIR -86 176 74 1629 76 0 14 chr11 38508089 38508363 -112275190 + AluY SINE Alu 63 333 0 786 189 16 70 chr11 38508556 38508741 -112274812 - L2 LINE L2 -2 3311 3137 313 252 86 65 chr11 38509435 38509574 -112273979 - HAL1b LINE L1 -1198 150 9 1591 168 50 99 chr11 38510014 38510263 -112273290 - MLT1B LTR MaLR 0 390 167 1408 186 62 7 chr11 38510263 38510554 -112272999 - AluJo SINE Alu -5 307 1 1591 168 50 99 chr11 38510554 38510708 -112272845 - MLT1B LTR MaLR -223 167 7 744 241 54 35 chr11 38511416 38511619 -112271934 + MER63A DNA MER1_type 1 207 -3 281 281 0 0 chr11 38512347 38512404 -112271149 + L2 LINE L2 3162 3218 -54 1263 237 147 41 chr11 38512658 38513148 -112270405 + MLT1F LTR MaLR 1 542 0 294 212 61 98 chr11 38514325 38514457 -112269096 + MIR3 SINE MIR 14 140 -68 1202 117 0 11 chr11 38514508 38514687 -112268866 - MER96B DNA MER1_type? 0 417 241 656 323 11 35 chr11 38514829 38515089 -112268464 + MIR SINE MIR 1 254 -8 786 154 160 13 chr11 38515768 38515924 -112267629 - MER5A DNA MER1_type -4 185 7 766 252 81 40 chr11 38515928 38516150 -112267403 + MIR SINE MIR 31 261 -1 304 329 206 7 chr11 38516400 38516555 -112266998 - MIR SINE MIR -65 197 12 188 306 69 0 chr11 38516651 38516723 -112266830 - L2 LINE L2 -93 3220 3144 424 235 295 31 chr11 38516741 38517088 -112266465 + MLT1J1 LTR MaLR 1 403 -6 233 311 122 0 chr11 38517173 38517247 -112266306 + MER5B DNA MER1_type 65 147 -31 199 245 0 0 chr11 38517395 38517444 -112266109 + MIR SINE MIR 144 192 -70 355 83 0 0 chr11 38517450 38517498 -112266055 - MLT1F LTR MaLR 0 542 495 2947 120 23 10 chr11 38517499 38518092 -112265461 - MER4E LTR ERV1 0 766 1 1411 237 189 2 chr11 38518092 38518504 -112265049 - MLT1F LTR MaLR -45 497 9 872 263 46 5 chr11 38518975 38519192 -112264361 + MIR SINE MIR 7 232 -30 628 308 201 9 chr11 38519920 38520507 -112263046 - L2 LINE L2 -51 3262 2548 212 210 0 16 chr11 38521354 38521416 -112262137 + GA-rich Low_complexity Low_complexity 4 64 0 230 321 71 0 chr11 38521860 38521944 -112261609 - L2 LINE L2 -14 3258 3169 240 233 27 14 chr11 38522078 38522151 -112261402 + L2 LINE L2 2986 3059 -213 365 326 14 21 chr11 38522426 38522567 -112260986 - MER5B DNA MER1_type -2 176 37 863 236 52 34 chr11 38522572 38522805 -112260748 + L1MC4a LINE L1 5684 5920 -1888 368 224 0 0 chr11 38522819 38522886 -112260667 - MER58 DNA MER1_type -10 2410 2344 318 266 80 9 chr11 38523496 38523609 -112259944 + MIR SINE MIR 77 197 -65 1314 154 94 50 chr11 38524005 38524353 -112259200 + AluJo SINE Alu 1 361 0 245 294 71 12 chr11 38524658 38524743 -112258810 - L2 LINE L2 -14 3258 3169 190 104 21 21 chr11 38524937 38524985 -112258568 + (CAAA)n Simple_repeat Simple_repeat 2 49 0 504 312 68 71 chr11 38525289 38525642 -112257911 - L2 LINE L2 -3 3310 2959 433 289 69 35 chr11 38525893 38526153 -112257400 - MER102b DNA MER1_type -29 312 44 279 0 0 0 chr11 38526251 38526282 -112257271 + (TG)n Simple_repeat Simple_repeat 2 32 0 864 190 46 11 chr11 38526726 38526900 -112256653 + FRAM SINE Alu 1 173 -3 221 364 134 16 chr11 38526909 38527096 -112256457 - L3 LINE CR1 -1 1576 1368 319 230 20 132 chr11 38527162 38527314 -112256239 - L2 LINE L2 -19 3294 3160 276 77 0 0 chr11 38527317 38527356 -112256197 + (TTCC)n Simple_repeat Simple_repeat 2 40 0 21 82 0 0 chr11 38527469 38527518 -112256035 + AT_rich Low_complexity Low_complexity 1 49 0 1279 208 36 15 chr11 38527996 38528441 -112255112 - MER41-int LTR ERV1 -1913 3023 2470 325 263 44 29 chr11 38528461 38528598 -112254955 - MER41-int LTR ERV1 -2158 3788 3650 291 135 96 0 chr11 38528713 38528765 -112254788 - MLT2B1 LTR ERVL 0 520 464 560 238 98 14 chr11 38528802 38528945 -112254608 + MIR SINE MIR 73 227 -35 3173 60 44 14 chr11 38529539 38529971 -112253582 - L1PA6 LINE L1 -2 6152 5708 530 284 0 7 chr11 38530012 38530167 -112253386 - L1ME LINE L1 -459 5662 5509 315 242 25 56 chr11 38530201 38530362 -112253191 + L1ME4a LINE L1 5966 6121 0 302 298 223 0 chr11 38530668 38530789 -112252764 - MIR SINE MIR -50 212 65 499 221 74 20 chr11 38530832 38530981 -112252572 - MLT1L LTR MaLR -61 554 398 352 245 32 39 chr11 38531105 38531260 -112252293 + L1ME4a LINE L1 5966 6119 -2 432 252 111 107 chr11 38531294 38531592 -112251961 - MLT1L LTR MaLR -289 326 28 298 248 95 51 chr11 38532078 38532215 -112251338 + MLT1I LTR MaLR 1 143 -266 1087 171 17 70 chr11 38533008 38533295 -112250258 + L1MB8 LINE L1 5902 6173 -5 512 236 9 0 chr11 38533447 38533557 -112249996 - MER81 DNA DNA -2 112 2 400 245 119 60 chr11 38533691 38533842 -112249711 - MIR SINE MIR -102 160 1 654 241 50 0 chr11 38533967 38534108 -112249445 + MIR SINE MIR 4 151 -111 259 191 29 0 chr11 38534123 38534191 -112249362 + (TATATG)n Simple_repeat Simple_repeat 3 72 0 290 250 11 23 chr11 38534194 38534282 -112249271 + MIR SINE MIR 164 250 -12 390 304 47 27 chr11 38534597 38534745 -112248808 - MIR SINE MIR -91 171 21 1814 206 58 104 chr11 38534755 38535323 -112248230 - MLT1F LTR MaLR 0 542 1 314 356 0 10 chr11 38536850 38536954 -112246599 + MIR SINE MIR 19 121 -87 190 286 14 14 chr11 38537280 38537350 -112246203 + MIR SINE MIR 129 198 -64 2094 89 0 0 chr11 38537356 38537638 -112245915 - AluSg1 SINE Alu -27 282 1 207 243 252 0 chr11 38537680 38537783 -112245770 + L2 LINE L2 3111 3239 -74 400 236 34 115 chr11 38537836 38538044 -112245509 + L2 LINE L2 3123 3313 0 244 259 0 35 chr11 38538050 38538108 -112245445 - MIR SINE MIR -133 75 20 985 237 127 32 chr11 38538198 38538514 -112245039 - L1ME3A LINE L1 -19 6151 5806 228 299 5 43 chr11 38538731 38538915 -112244638 + (CACCC)n Simple_repeat Simple_repeat 3 179 0 719 263 0 3 chr11 38539201 38539506 -112244047 + (TGG)n Simple_repeat Simple_repeat 1 304 0 249 182 0 0 chr11 38539788 38539843 -112243710 + (CCA)n Simple_repeat Simple_repeat 3 57 0 1256 274 46 29 chr11 38540260 38540554 -112242999 - LTR16C LTR ERVL -2 489 187 2306 109 3 0 chr11 38540554 38540857 -112242696 + AluSc SINE Alu 1 304 -5 1256 274 46 29 chr11 38540857 38540909 -112242644 - LTR16C LTR ERVL -304 187 137 384 237 0 63 chr11 38541666 38541797 -112241756 + L1MC4a LINE L1 5706 5826 -297 488 276 102 31 chr11 38542402 38542627 -112240926 + MIR SINE MIR 15 255 -7 675 245 40 20 chr11 38543724 38543924 -112239629 + MIR SINE MIR 2 205 -57 493 306 58 0 chr11 38544640 38544813 -112238740 + MIR SINE MIR 53 235 -27 396 301 80 0 chr11 38544970 38545133 -112238420 + MIR SINE MIR 87 262 0 856 198 104 0 chr11 38545930 38546132 -112237421 - MER58A DNA MER1_type 0 224 2 3477 150 22 81 chr11 38546136 38546868 -112236685 - LTR8 LTR ERV1 -2 689 1 433 224 127 18 chr11 38547091 38547256 -112236297 + MIR SINE MIR 25 214 -48 340 205 41 98 chr11 38547564 38547593 -112235960 - MIR SINE MIR -77 185 156 4199 141 14 34 chr11 38547593 38547627 -112235926 - L1MB8 LINE L1 -5 6173 6140 1670 204 65 0 chr11 38547627 38547965 -112235588 - MLT1A1 LTR MaLR -3 362 3 4199 141 14 34 chr11 38547965 38548715 -112234838 - L1MB8 LINE L1 -38 6140 5405 340 205 41 98 chr11 38548715 38548807 -112234746 - MIR SINE MIR -106 156 71 378 269 52 21 chr11 38548903 38549062 -112234491 + L1MC4a LINE L1 5778 5947 -174 223 246 102 68 chr11 38549093 38549211 -112234342 + L2 LINE L2 3187 3308 -5 316 365 6 33 chr11 38550231 38550412 -112233141 + L2 LINE L2 2507 2682 -632 648 301 31 13 chr11 38550431 38550657 -112232896 + MIR SINE MIR 2 231 -31 2062 121 0 13 chr11 38550688 38551001 -112232552 - AluSx SINE Alu -3 309 1 188 329 149 19 chr11 38551063 38551224 -112232329 + L2 LINE L2 2794 2975 -339 360 236 67 106 chr11 38551390 38551720 -112231833 - L1MC5 LINE L1 -36 7925 7609 195 42 0 0 chr11 38552656 38552680 -112230873 + (CAGCC)n Simple_repeat Simple_repeat 1 24 0 2388 148 59 12 chr11 38552972 38553377 -112230176 + MSTB LTR MaLR 1 424 -2 213 39 0 0 chr11 38553603 38553629 -112229924 + (TTG)n Simple_repeat Simple_repeat 2 27 0 225 287 127 40 chr11 38553753 38553903 -112229650 + MIR SINE MIR 46 208 -54 2160 149 5 68 chr11 38554430 38554789 -112228764 + MLT1B LTR MaLR 1 332 -58 3540 130 21 4 chr11 38554789 38555305 -112228248 + MER1A DNA MER1_type 3 527 0 2160 149 5 68 chr11 38555305 38555360 -112228193 + MLT1B LTR MaLR 332 389 -1 573 246 152 6 chr11 38556326 38556497 -112227056 + MIR SINE MIR 48 243 -19 227 280 0 0 chr11 38556601 38556651 -112226902 + MIR SINE MIR 9 58 -204 581 242 129 0 chr11 38557914 38558092 -112225461 + MIR SINE MIR 47 247 -15 469 324 12 6 chr11 38558330 38558503 -112225050 - Charlie8 DNA MER1_type -2141 276 103 2229 149 6 6 chr11 38558650 38559013 -112224540 + MLT1A1 LTR MaLR 2 364 -1 386 118 0 106 chr11 38559359 38559458 -112224095 + L1M4 LINE L1 5417 5500 -678 2297 149 27 89 chr11 38559477 38559545 -112224008 + L1MB8 LINE L1 5422 5493 -685 1488 164 0 92 chr11 38559545 38559849 -112223704 + AluJo SINE Alu 1 276 -36 2297 149 27 89 chr11 38559849 38560305 -112223248 + L1MB8 LINE L1 5493 5913 -265 581 205 27 68 chr11 38560336 38560564 -112222989 + L1MB8 LINE L1 5891 6107 -71 610 256 55 73 chr11 38561547 38561727 -112221826 + MLT1K LTR MaLR 311 486 -102 938 244 23 14 chr11 38561727 38561948 -112221605 - MER58A DNA MER1_type 0 224 2 610 256 55 73 chr11 38561948 38562040 -112221513 + MLT1K LTR MaLR 486 578 -10 268 294 46 0 chr11 38562417 38562526 -112221027 + MIR3 SINE MIR 45 158 -50 1403 85 0 0 chr11 38562531 38562707 -112220846 - AluSg/x SINE Alu -8 304 129 248 258 119 50 chr11 38562839 38562998 -112220555 + MIR SINE MIR 72 241 -21 * 590 327 18 0 chr11 38562980 38563197 -112220356 + MIR SINE MIR 15 235 -27 22 0 0 0 chr11 38563386 38563408 -112220145 + AT_rich Low_complexity Low_complexity 1 22 0 262 315 94 38 chr11 38563493 38563760 -112219793 - MLT1L LTR MaLR -125 490 209 2203 143 29 18 chr11 38563981 38564367 -112219186 - MLT1B LTR MaLR 0 390 1 1165 216 204 45 chr11 38565024 38565426 -112218127 + MLT1C LTR MaLR 1 466 -1 260 287 11 11 chr11 38565880 38565974 -112217579 + MLT1K LTR MaLR 492 585 -3 800 213 19 19 chr11 38566022 38566182 -112217371 + FRAM SINE Alu 1 152 -24 2082 254 65 11 chr11 38566186 38566828 -112216725 + L1ME3 LINE L1 5467 6143 -19 250 26 0 0 chr11 38566841 38566879 -112216674 + L1MA3 LINE L1 6268 6305 0 266 252 61 8 chr11 38567003 38567134 -112216419 - L1ME4a LINE L1 -16 6105 5968 6280 63 1 3 chr11 38567265 38568045 -112215508 - LTR17 LTR ERV1 0 780 2 245 270 79 33 chr11 38568075 38568227 -112215326 - L1ME4a LINE L1 -340 5781 5623 260 306 12 0 chr11 38568273 38568358 -112215195 - L1ME4a LINE L1 -510 5611 5526 606 254 76 80 chr11 38568373 38568591 -112214962 - L1MC5 LINE L1 -36 7925 7708 315 0 0 0 chr11 38568591 38568626 -112214927 + (CA)n Simple_repeat Simple_repeat 2 36 0 606 254 76 80 chr11 38568626 38568970 -112214583 - L1MC5 LINE L1 -253 7708 7365 186 43 0 0 chr11 38568970 38568993 -112214560 + (CCCCCA)n Simple_repeat Simple_repeat 6 28 0 4918 139 43 31 chr11 38569470 38570363 -112213190 + MER4D LTR ERV1 1 903 0 2368 139 71 3 chr11 38570565 38570949 -112212604 + MSTA LTR MaLR 1 346 -18 1042 211 67 96 chr11 38571166 38571687 -112211866 - MER31-int LTR ERV1 -125 6206 4411 333 189 123 38 chr11 38571718 38571824 -112211729 - LTR37A LTR ERV1 -311 115 1 5318 183 21 70 chr11 38571825 38573091 -112210462 - MER31-int LTR ERV1 -687 4249 3048 2062 145 3 0 chr11 38573091 38573394 -112210159 - AluSq SINE Alu -9 304 1 5318 183 21 70 chr11 38573394 38573451 -112210102 - MER31-int LTR ERV1 -1888 3048 2990 280 311 28 44 chr11 38573553 38573620 -112209933 + L2 LINE L2 2484 2551 -763 2643 145 22 0 chr11 38573620 38574035 -112209518 + MSTB LTR MaLR 1 424 -2 280 311 28 44 chr11 38574035 38574147 -112209406 + L2 LINE L2 2551 2660 -654 378 192 30 30 chr11 38574156 38574255 -112209298 - MLT1J LTR MaLR -9 502 404 2675 237 34 16 chr11 38574265 38574949 -112208604 + L1ME1 LINE L1 5451 6146 -20 999 185 158 65 chr11 38574993 38575361 -112208192 - MLT1J LTR MaLR -108 403 2 269 309 33 46 chr11 38575378 38575530 -112208023 + L2 LINE L2 2698 2847 -467 246 295 135 48 chr11 38575705 38575912 -112207641 + L2 LINE L2 3089 3313 0 1745 153 80 0 chr11 38576158 38576433 -112207120 - AluJb SINE Alu -15 297 1 356 143 162 19 chr11 38577193 38577298 -112206255 + MER113 DNA MER1_type? 24 143 -378 1922 140 14 10 chr11 38577306 38577598 -112205955 - AluJb SINE Alu -19 293 1 198 0 0 0 chr11 38577598 38577620 -112205933 + (T)n Simple_repeat Simple_repeat 1 22 0 297 234 85 32 chr11 38577646 38577740 -112205813 + L2 LINE L2 3173 3271 -1 230 326 12 12 chr11 38577975 38578061 -112205492 + L2 LINE L2 3187 3272 0 208 229 60 72 chr11 38578061 38578144 -112205409 - MIR SINE MIR -78 184 103 1348 215 56 53 chr11 38578245 38578585 -112204968 + MLT1A1 LTR MaLR 23 363 -2 562 277 168 12 chr11 38578869 38579253 -112204300 - MLT1J LTR MaLR -3 508 1 595 92 0 0 chr11 38579806 38579882 -112203671 - AluSg/x SINE Alu -23 289 214 2500 105 6 25 chr11 38579882 38580244 -112203309 + THE1A LTR MaLR 1 355 0 1590 133 0 0 chr11 38580244 38580462 -112203091 - AluSq SINE Alu -95 218 1 845 234 84 0 chr11 38580572 38580799 -112202754 - MIR SINE MIR -10 252 7 570 274 107 28 chr11 38581177 38581429 -112202124 + Charlie8 DNA MER1_type 1 272 -2145 372 254 249 11 chr11 38581531 38581716 -112201837 - MIR SINE MIR -28 234 6 185 277 0 84 chr11 38582699 38582782 -112200771 + MIR SINE MIR 123 198 -64 329 349 121 6 chr11 38584777 38584943 -112198610 - MIR SINE MIR -58 204 20 701 90 120 0 chr11 38585004 38585171 -112198382 + AluSx SINE Alu 5 191 -121 308 195 126 69 chr11 38585629 38585788 -112197765 - L1MD1 LINE L1 -299 5943 5776 679 206 30 12 chr11 38585885 38586050 -112197503 - AluSx SINE Alu -23 286 119 240 86 0 0 chr11 38586052 38586087 -112197466 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 966 127 0 8 chr11 38586089 38586223 -112197330 - AluSx SINE Alu -180 133 1 7938 202 49 28 chr11 38586224 38588347 -112195206 - L1MDa LINE L1 -1770 4770 2693 1796 163 0 3 chr11 38588347 38588668 -112194885 - AluJb SINE Alu 0 320 1 7938 202 49 28 chr11 38588668 38589228 -112194325 - L1MDa LINE L1 -3847 2693 2146 2427 207 32 43 chr11 38589228 38589788 -112193765 + MLT2B3 LTR ERVL 1 554 0 7938 202 49 28 chr11 38589788 38591535 -112192018 - L1MDa LINE L1 -4394 2146 17 1877 162 0 0 chr11 38592371 38592667 -112190886 - AluJb SINE Alu -16 296 1 610 259 197 17 chr11 38592780 38593070 -112190483 - LTR16C LTR ERVL -53 438 97 250 247 107 81 chr11 38594061 38594482 -112189071 - L1ME4a LINE L1 0 6121 5690 282 340 89 25 chr11 38594503 38594785 -112188768 - L1ME4a LINE L1 -2182 5626 5327 255 277 294 11 chr11 38595739 38595916 -112187637 - MIR SINE MIR -28 234 8 935 224 67 55 chr11 38596568 38596747 -112186806 - Charlie7 DNA MER1_type -1927 685 509 2127 102 0 0 chr11 38596747 38597041 -112186512 + AluSc SINE Alu 2 295 -14 935 224 67 55 chr11 38597041 38597222 -112186331 - Charlie7 DNA MER1_type -2103 509 321 273 187 178 28 chr11 38597254 38597361 -112186192 - Charlie7 DNA MER1_type -2445 167 45 2123 79 45 0 chr11 38598719 38599009 -112184544 + AluY SINE Alu 1 303 -8 472 263 108 52 chr11 38599259 38599491 -112184062 + MIR SINE MIR 16 260 -2 235 223 149 50 chr11 38600513 38600634 -112182919 + MLT1K LTR MaLR 141 273 -315 504 267 33 7 chr11 38600832 38600982 -112182571 - MER74B LTR ERVL 0 622 469 1724 211 44 86 chr11 38601850 38602321 -112181232 - MER74A LTR ERVL -13 545 101 243 0 0 0 chr11 38602321 38602348 -112181205 + (TC)n Simple_repeat Simple_repeat 2 28 0 1724 211 44 86 chr11 38602348 38602445 -112181108 - MER74A LTR ERVL -457 101 1 909 227 132 53 chr11 38602445 38602802 -112180751 - MLT1I LTR MaLR -20 389 5 1664 185 13 0 chr11 38602877 38603175 -112180378 + AluJb SINE Alu 1 302 -10 32 26 0 0 chr11 38603815 38603854 -112179699 + AT_rich Low_complexity Low_complexity 1 39 0 753 277 107 36 chr11 38604611 38605022 -112178531 - MLT1J LTR MaLR -8 503 64 270 308 55 11 chr11 38605247 38605338 -112178215 + L2 LINE L2 3202 3296 -17 232 278 148 60 chr11 38605838 38606054 -112177499 + L2 LINE L2 2924 3158 -114 219 267 56 81 chr11 38606984 38607145 -112176408 + L2 LINE L2 2588 2744 -570 230 237 34 0 chr11 38607412 38607471 -112176082 + L2 LINE L2 3209 3269 -3 241 286 45 9 chr11 38608128 38608240 -112175313 + L2 LINE L2 2555 2670 -644 527 254 88 77 chr11 38608255 38608515 -112175038 + L2 LINE L2 2346 2608 -706 234 222 0 0 chr11 38608765 38608819 -112174734 + CT-rich Low_complexity Low_complexity 2 55 0 1792 93 54 0 chr11 38608819 38609077 -112174476 - AluSg SINE Alu -38 272 1 267 294 112 29 chr11 38609092 38609262 -112174291 - L2 LINE L2 -148 3165 2982 721 277 15 5 chr11 38609384 38609586 -112173967 - MIR SINE MIR -46 216 13 2018 118 3 3 chr11 38609638 38609934 -112173619 + AluSx SINE Alu 2 297 -15 186 103 0 0 chr11 38611199 38611228 -112172325 + (GGGA)n Simple_repeat Simple_repeat 1 29 0 327 287 11 0 chr11 38611660 38611754 -112171799 - L1ME LINE L1 -424 5697 5603 717 134 22 30 chr11 38613248 38613382 -112170171 - AluJo SINE Alu -178 134 2 2066 94 7 3 chr11 38613412 38613711 -112169842 + AluY SINE Alu 1 300 -11 377 325 47 0 chr11 38613712 38613924 -112169629 + L1MC4a LINE L1 5690 5911 -1897 1198 207 5 0 chr11 38614229 38614437 -112169116 - MER58A DNA MER1_type -9 215 7 307 207 64 114 chr11 38614498 38614638 -112168915 + L1ME4a LINE L1 5978 6110 -11 743 320 88 12 chr11 38614741 38615072 -112168481 + L3 LINE CR1 912 1267 -310 560 287 5 69 chr11 38615294 38615482 -112168071 + MIR SINE MIR 77 252 -10 184 125 0 31 chr11 38615659 38615691 -112167862 + MIR SINE MIR 111 141 -67 288 317 50 37 chr11 38616131 38616292 -112167261 - MIR SINE MIR -26 236 74 1993 120 17 0 chr11 38616409 38616709 -112166844 + AluSx SINE Alu 1 305 -7 229 296 14 14 chr11 38617459 38617530 -112166023 - L2 LINE L2 -665 2649 2579 480 169 9 5 chr11 38617536 38617758 -112165795 + (TG)n Simple_repeat Simple_repeat 1 223 0 652 261 169 0 chr11 38618859 38619066 -112164487 - MIR SINE MIR 0 262 21 2075 108 0 41 chr11 38619078 38619392 -112164161 - AluSx SINE Alu -11 301 1 1953 145 7 0 chr11 38619445 38619741 -112163812 - AluJb SINE Alu -14 298 1 231 299 54 27 chr11 38619822 38619969 -112163584 - L2 LINE L2 -1360 1954 1804 10553 130 25 2 chr11 38619981 38621608 -112161945 + Tigger1 DNA MER2_type 1 1663 -755 3714 116 32 28 chr11 38621599 38622201 -112161352 + Tigger1 DNA MER2_type 1815 2418 0 * 589 218 21 42 chr11 38622597 38622739 -112160814 + MIR3 SINE MIR 39 177 -31 32 43 0 0 chr11 38622975 38623021 -112160532 + AT_rich Low_complexity Low_complexity 1 46 0 1790 133 30 0 chr11 38623292 38623563 -112159990 + AluSx SINE Alu 1 279 -33 489 47 0 0 chr11 38623563 38623627 -112159926 + (CA)n Simple_repeat Simple_repeat 1 64 0 200 225 50 0 chr11 38623894 38623934 -112159619 - L2 LINE L2 -8 3305 3264 635 216 108 0 chr11 38624467 38624606 -112158947 + MER45A DNA AcHobo 24 177 -1 2160 188 17 23 chr11 38624611 38625089 -112158464 + Charlie1b DNA MER1_type 41 515 -8 204 283 211 26 chr11 38625347 38625499 -112158054 + L3 LINE CR1 1382 1561 -16 229 229 33 0 chr11 38626163 38626224 -112157329 + CT-rich Low_complexity Low_complexity 1 63 0 955 187 57 57 chr11 38627554 38627784 -112155769 + MIR SINE MIR 12 241 -21 763 274 91 25 chr11 38627888 38628129 -112155424 + MIR SINE MIR 3 259 -3 265 318 45 11 chr11 38628304 38628392 -112155161 + MIR SINE MIR 36 126 -136 207 349 0 24 chr11 38628426 38628509 -112155044 - L2 LINE L2 -1 3312 3232 279 271 31 21 chr11 38628522 38628618 -112154935 + MIR SINE MIR 160 256 -6 621 285 33 24 chr11 38629623 38629848 -112153705 + MIR SINE MIR 5 235 -27 210 175 25 0 chr11 38629938 38629978 -112153575 + GA-rich Low_complexity Low_complexity 1 41 0 253 226 16 32 chr11 38630396 38630458 -112153095 + C-rich Low_complexity Low_complexity 1 61 0 291 253 0 69 chr11 38630903 38630990 -112152563 - MIR SINE MIR -26 236 156 309 100 0 0 chr11 38631264 38631314 -112152239 + (TC)n Simple_repeat Simple_repeat 1 50 0 2584 285 95 19 chr11 38631333 38632004 -112151549 - L2 LINE L2 -2215 1099 329 2099 170 92 22 chr11 38632004 38632493 -112151060 + Charlie1b DNA MER1_type 1 523 0 2584 285 95 19 chr11 38632493 38632799 -112150754 - L2 LINE L2 -2985 329 48 2048 102 3 7 chr11 38633111 38633420 -112150133 - AluSx SINE Alu 0 308 1 731 323 141 31 chr11 38633615 38634070 -112149483 + L2 LINE L2 2807 3311 -2 2203 93 0 6 chr11 38634123 38634435 -112149118 + AluSg SINE Alu 1 310 0 1991 136 3 0 chr11 38635307 38635616 -112147937 + AluSx SINE Alu 1 310 -2 545 76 13 0 chr11 38636836 38636915 -112146638 + (GGA)n Simple_repeat Simple_repeat 1 80 0 186 103 0 0 chr11 38637045 38637074 -112146479 + (GGGA)n Simple_repeat Simple_repeat 1 29 0 366 293 72 49 chr11 38639272 38639507 -112144046 - MIR SINE MIR -18 244 14 449 242 137 13 chr11 38640385 38640538 -112143015 - MIR SINE MIR -13 249 78 21 0 0 0 chr11 38642353 38642374 -112141179 + AT_rich Low_complexity Low_complexity 1 21 0 2201 75 0 7 chr11 38642423 38642717 -112140836 + AluSc SINE Alu 1 292 -17 543 296 52 12 chr11 38642799 38642971 -112140582 + MIR3 SINE MIR 20 198 -10 451 194 284 0 chr11 38642996 38643130 -112140423 - MER5A DNA MER1_type -2 187 16 1049 146 96 20 chr11 38643160 38643359 -112140194 - MER20 DNA MER1_type 0 219 6 307 355 65 0 chr11 38643371 38643509 -112140044 + MER5B DNA MER1_type 1 147 -31 470 298 40 45 chr11 38643566 38643764 -112139789 + MIR SINE MIR 56 252 -10 371 281 16 81 chr11 38643935 38644120 -112139433 + MER102b DNA MER1_type 6 178 -163 274 239 34 23 chr11 38644118 38644206 -112139347 + MER102b DNA MER1_type 251 339 -2 * 2007 93 0 0 chr11 38644231 38644501 -112139052 - AluSx SINE Alu -2 310 41 222 237 17 17 chr11 38645163 38645207 -112138346 + CT-rich Low_complexity Low_complexity 2 48 -12 1760 174 7 0 chr11 38645207 38645517 -112138036 - AluJo SINE Alu 0 312 1 222 237 17 17 chr11 38645517 38645531 -112138022 + CT-rich Low_complexity Low_complexity 47 60 0 1695 170 35 0 chr11 38646559 38646848 -112136705 + AluJo SINE Alu 1 299 -13 600 254 14 42 chr11 38646882 38647024 -112136529 - L2 LINE L2 -15 3298 3161 570 309 73 20 chr11 38647189 38647435 -112136118 + MIR SINE MIR 4 262 0 1928 70 4 0 chr11 38647728 38647972 -112135581 + L1PA5 LINE L1 5907 6151 -3 314 254 33 41 chr11 38648166 38648288 -112135265 - MIR3 SINE MIR -20 188 68 751 237 53 68 chr11 38648383 38648649 -112134904 + MER102a DNA MER1_type 43 304 -26 203 276 58 81 chr11 38648824 38648911 -112134642 + MIR SINE MIR 33 117 -145 734 307 132 19 chr11 38649070 38649235 -112134318 - L1MC4a LINE L1 -1779 6029 5884 2489 49 0 3 chr11 38649235 38649543 -112134010 - AluY SINE Alu -4 307 1 734 307 132 19 chr11 38649543 38649856 -112133697 - L1MC4a LINE L1 -1924 5884 5497 436 309 117 9 chr11 38649917 38650140 -112133413 - MIR SINE MIR 0 262 16 1909 87 11 4 chr11 38650159 38650424 -112133129 - AluSq SINE Alu -13 300 34 500 343 84 38 chr11 38650512 38650929 -112132624 - L2 LINE L2 0 3272 2837 447 296 41 35 chr11 38650984 38651156 -112132397 + MIR SINE MIR 9 181 -81 1061 101 4 0 chr11 38652057 38652288 -112131265 + (TA)n Simple_repeat Simple_repeat 1 232 0 3796 88 3 34 chr11 38652288 38652959 -112130594 - L1P5 LINE L1 -370 5781 5126 304 276 86 55 chr11 38652960 38653123 -112130430 - MIR3 SINE MIR -9 199 32 573 163 0 0 chr11 38653478 38653570 -112129983 - FRAM SINE Alu -11 165 74 642 158 0 219 chr11 38653572 38653800 -112129753 - MER20 DNA MER1_type -41 178 1 353 238 12 0 chr11 38653933 38654013 -112129540 - L2 LINE L2 0 3313 3233 2325 131 9 6 chr11 38654029 38654365 -112129188 - MER1B DNA MER1_type 0 337 1 466 254 136 40 chr11 38654553 38654730 -112128823 + MIR SINE MIR 26 219 -43 222 290 32 0 chr11 38655176 38655238 -112128315 + MIR SINE MIR 188 251 -11 10573 109 5 11 chr11 38655398 38656930 -112126623 - L1P LINE L1 -4323 1823 301 7113 118 16 7 chr11 38657787 38658672 -112124881 - L1MA3 LINE L1 0 6305 5430 1915 147 70 17 chr11 38658672 38659027 -112124526 - THE1C LTR MaLR -1 374 1 7113 118 16 7 chr11 38659027 38659936 -112123617 - L1MA3 LINE L1 -875 5430 4493 1165 183 16 75 chr11 38659936 38660188 -112123365 + MLT1B LTR MaLR 154 390 0 245 296 57 11 chr11 38660221 38660309 -112123244 - MIR SINE MIR -4 258 167 334 262 134 55 chr11 38660395 38660541 -112123012 - MIR SINE MIR -21 241 79 1157 230 154 29 chr11 38660541 38660988 -112122565 - MLT1D LTR MaLR -2 503 1 334 262 134 55 chr11 38660988 38661005 -112122548 - MIR SINE MIR -183 79 65 499 290 73 19 chr11 38661173 38661432 -112122121 + L1MC4a LINE L1 5610 5882 -1926 976 119 20 7 chr11 38661490 38661641 -112121912 - MER3 DNA MER1_type -56 153 1 21 26 0 26 chr11 38661808 38661827 -112121726 + AT_rich Low_complexity Low_complexity 1 19 -19 1635 182 0 26 chr11 38661827 38662129 -112121424 - AluJo SINE Alu -18 294 1 21 26 0 26 chr11 38662129 38662148 -112121405 + AT_rich Low_complexity Low_complexity 19 38 0 202 288 41 0 chr11 38662292 38662365 -112121188 + MIR SINE MIR 64 139 -69 665 235 62 17 chr11 38662688 38662867 -112120686 - MIR SINE MIR -6 256 70 337 210 30 15 chr11 38663035 38663148 -112120405 + MIR SINE MIR 1 116 -92 2130 118 7 0 chr11 38663157 38663463 -112120090 - AluSg SINE Alu -2 308 1 2033 117 40 3 chr11 38663543 38663843 -112119710 - AluSx SINE Alu -1 311 1 2101 86 7 0 chr11 38663882 38664173 -112119380 - AluSp SINE Alu 0 313 21 189 343 57 0 chr11 38664174 38664244 -112119309 - L2 LINE L2 -44 3228 3155 227 280 248 32 chr11 38665996 38666121 -112117432 - MIR SINE MIR -60 202 51 355 248 74 25 chr11 38666318 38666439 -112117114 + L2 LINE L2 3146 3272 0 290 313 70 31 chr11 38666454 38666582 -112116971 + L2 LINE L2 3139 3271 -1 1830 134 10 38 chr11 38667519 38667832 -112115721 - AluJo SINE Alu -8 304 1 2122 113 10 0 chr11 38668341 38668641 -112114912 - AluSx SINE Alu -9 303 1 193 341 12 24 chr11 38669740 38669825 -112113728 - L2 LINE L2 -2 3270 3187 346 218 146 9 chr11 38669869 38669979 -112113574 - L2 LINE L2 -11 3302 3178 2063 118 10 0 chr11 38670367 38670664 -112112889 - AluSg1 SINE Alu -9 300 1 324 197 53 0 chr11 38670920 38670996 -112112557 - MIR3 SINE MIR -29 179 100 237 286 0 0 chr11 38671244 38671307 -112112246 - Charlie8 DNA MER1_type 0 2417 2355 712 274 37 5 chr11 38671350 38671540 -112112013 - Charlie8 DNA MER1_type -2216 201 6 280 269 186 32 chr11 38671588 38671744 -112111809 - MIR SINE MIR -33 229 50 1607 184 49 38 chr11 38671767 38672114 -112111439 - MLT1A2 LTR MaLR -5 369 19 691 253 99 18 chr11 38672959 38673180 -112110373 + MIR SINE MIR 20 258 -4 377 129 40 59 chr11 38673304 38673508 -112110045 + AluJo SINE Alu 3 290 -12 269 227 91 0 chr11 38673609 38673675 -112109878 + L3b LINE CR1 1266 1337 -246 2012 106 3 26 chr11 38674091 38674394 -112109159 + AluSx SINE Alu 1 296 -16 841 238 52 19 chr11 38675790 38676000 -112107553 - MIR SINE MIR 0 262 46 339 310 102 0 chr11 38676323 38676520 -112107033 + MER102a DNA MER1_type 92 308 -22 348 258 117 8 chr11 38676596 38676724 -112106829 + MIR SINE MIR 111 252 -10 686 288 47 51 chr11 38678047 38678304 -112105249 - MIR SINE MIR -1 261 6 299 293 84 84 chr11 38678242 38678457 -112105096 + MIR SINE MIR 42 256 -6 * 218 91 68 0 chr11 38679776 38679820 -112103733 + T-rich Low_complexity Low_complexity 1 47 0 7715 20 4 0 chr11 38679820 38681328 -112102225 - L1PA3 LINE L1 -3 6152 4637 1877 151 0 0 chr11 38681561 38681852 -112101701 + AluSx SINE Alu 1 291 -21 26 0 0 0 chr11 38681855 38681881 -112101672 + AT_rich Low_complexity Low_complexity 1 26 0 413 250 68 56 chr11 38682034 38682286 -112101267 - L1MC4a LINE L1 -1853 5955 5701 350 308 19 10 chr11 38684233 38684337 -112099216 + L2 LINE L2 3168 3272 0 246 243 187 28 chr11 38684516 38684623 -112098930 + MIR SINE MIR 40 163 -99 2385 58 0 0 chr11 38684623 38684917 -112098636 + AluY SINE Alu 8 301 -10 1695 193 173 16 chr11 38685604 38686044 -112097509 - Charlie1b DNA MER1_type 0 523 15 610 233 81 35 chr11 38686215 38686415 -112097138 + MIR SINE MIR 7 211 -51 1041 219 66 8 chr11 38686437 38686679 -112096874 + MIR SINE MIR 2 257 -5 396 0 0 0 chr11 38686937 38686981 -112096572 + (CA)n Simple_repeat Simple_repeat 2 45 0 219 313 8 47 chr11 38687635 38687763 -112095790 + L2 LINE L2 3171 3293 -20 671 324 76 18 chr11 38687805 38688253 -112095300 - MER113 DNA MER1_type? -43 478 5 237 286 0 0 chr11 38689338 38689387 -112094166 + (TG)n Simple_repeat Simple_repeat 2 50 0 596 218 109 45 chr11 38690039 38690440 -112093113 + Tigger8 DNA MER2_type 131 573 -93 672 170 127 67 chr11 38690817 38690929 -112092624 + MER5A DNA MER1_type 5 132 -57 2184 98 0 3 chr11 38690929 38691224 -112092329 - AluSx SINE Alu -18 294 1 672 170 127 67 chr11 38691224 38691276 -112092277 + MER5A DNA MER1_type 132 179 -10 560 284 20 59 chr11 38691271 38691475 -112092078 - MIR SINE MIR -35 227 32 * 224 346 0 0 chr11 38692312 38692390 -112091163 + MIR SINE MIR 2 79 -183 396 302 87 13 chr11 38692459 38692608 -112090945 + MIR SINE MIR 88 247 -15 334 293 263 10 chr11 38692661 38692859 -112090694 + MIR SINE MIR 3 250 -12 291 180 0 0 chr11 38693807 38693857 -112089696 - MER45A DNA AcHobo 0 178 129 1525 287 94 15 chr11 38693977 38694496 -112089057 - MER45C DNA AcHobo -353 600 41 196 310 52 0 chr11 38694977 38695035 -112088518 + L3 LINE CR1 1514 1574 -3 383 328 41 8 chr11 38695408 38695530 -112088023 - L2 LINE L2 -4 3309 3184 1989 129 0 7 chr11 38696230 38696525 -112087028 + AluSx SINE Alu 1 293 -19 344 268 89 42 chr11 38696771 38696967 -112086586 - MIR SINE MIR -38 224 15 237 235 162 81 chr11 38697287 38697423 -112086130 + MIR SINE MIR 110 256 -6 24 32 0 0 chr11 38697548 38697579 -112085974 + AT_rich Low_complexity Low_complexity 1 31 0 323 23 23 0 chr11 38698256 38698300 -112085253 + (TTTTTG)n Simple_repeat Simple_repeat 2 46 0 260 319 160 6 chr11 38698637 38698806 -112084747 + MIR SINE MIR 39 233 -29 1898 162 48 31 chr11 38699191 38699605 -112083948 - L1MB2 LINE L1 -3 6168 5748 1987 106 24 3 chr11 38699653 38699945 -112083608 - AluSx SINE Alu -14 298 1 553 360 70 29 chr11 38701357 38701699 -112081854 - L2 LINE L2 -9 3263 2908 316 149 40 27 chr11 38702828 38702902 -112080651 + MIR SINE MIR 46 120 -142 216 313 172 45 chr11 38704045 38704179 -112079374 + MIR3 SINE MIR 9 159 -49 382 159 212 106 chr11 38704746 38704791 -112078762 + MER53 DNA DNA 2 41 -148 1497 171 19 0 chr11 38704791 38705049 -112078504 + AluJb SINE Alu 32 294 -18 382 159 212 106 chr11 38705049 38705173 -112078380 + MER53 DNA DNA 41 189 0 311 250 48 12 chr11 38705330 38705414 -112078139 - MER115 DNA AcHobo -483 210 124 631 287 48 68 chr11 38706706 38706753 -112076800 + MIR SINE MIR 8 54 -208 2183 161 32 72 chr11 38706753 38707195 -112076358 - MSTB LTR MaLR 0 426 3 9142 177 22 12 chr11 38707196 38708448 -112075105 - MSTB-int LTR MaLR 0 1651 378 2172 109 0 0 chr11 38708448 38708742 -112074811 - AluSg SINE Alu -16 294 1 9142 177 22 12 chr11 38708742 38709124 -112074429 - MSTB-int LTR MaLR -1273 378 1 2331 164 28 28 chr11 38709124 38709550 -112074003 - MSTB LTR MaLR 0 426 1 631 287 48 68 chr11 38709550 38709750 -112073803 + MIR SINE MIR 52 253 -9 382 257 0 14 chr11 38710003 38710109 -112073444 + L1P4 LINE L1 5507 5607 -533 388 241 64 35 chr11 38710238 38710379 -112073174 + L1MC4a LINE L1 5755 5899 -1909 217 318 178 9 chr11 38711442 38711549 -112072004 + MIR SINE MIR 20 144 -118 542 253 58 17 chr11 38711690 38711864 -112071689 + MIR SINE MIR 79 259 -3 192 77 0 0 chr11 38712682 38712708 -112070845 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 274 325 12 0 chr11 38712715 38712795 -112070758 - L2 LINE L2 -18 3254 3174 575 297 36 36 chr11 38713214 38713436 -112070117 - MIR SINE MIR -6 256 35 249 270 0 0 chr11 38714956 38715019 -112068534 + L2 LINE L2 2737 2799 -515 260 321 37 0 chr11 38715171 38715252 -112068301 + L2 LINE L2 3169 3252 -20 253 285 80 33 chr11 38715446 38715591 -112067962 - MIR SINE MIR -63 145 6 580 240 16 0 chr11 38716280 38716405 -112067148 + MER45A DNA AcHobo 46 172 -6 637 309 20 10 chr11 38717314 38717518 -112066035 + MIR SINE MIR 7 212 -50 21 0 0 0 chr11 38718721 38718742 -112064811 + AT_rich Low_complexity Low_complexity 1 21 0 354 262 196 0 chr11 38718747 38718854 -112064699 + L2 LINE L2 3176 3303 -10 3290 142 25 23 chr11 38719427 38719989 -112063564 - MER34B LTR ERV1 0 565 3 539 301 40 75 chr11 38720221 38720647 -112062906 - L2 LINE L2 -9 3263 2853 189 309 0 0 chr11 38723380 38723422 -112060131 + L2 LINE L2 3257 3298 -15 2348 90 0 0 chr11 38723975 38724286 -112059267 + AluY SINE Alu 1 311 0 224 263 40 40 chr11 38724981 38725057 -112058496 + MIR SINE MIR 113 188 -74 678 275 53 14 chr11 38726169 38726376 -112057177 + MIR SINE MIR 27 241 -21 337 285 31 79 chr11 38726615 38726843 -112056710 - L1ME4a LINE L1 -39 6082 5866 186 368 146 11 chr11 38726850 38727035 -112056518 + L2 LINE L2 2196 2405 -909 599 252 32 35 chr11 38727742 38727979 -112055574 + MIR SINE MIR 10 244 -18 2187 91 7 3 chr11 38727992 38728290 -112055263 + AluSq SINE Alu 1 299 -14 465 280 154 55 chr11 38732538 38732831 -112050722 - L2 LINE L2 -3 3310 2989 2012 176 90 38 chr11 38732842 38733318 -112050235 - MLT1D LTR MaLR -4 501 1 199 298 121 16 chr11 38734017 38734141 -112049412 + L2 LINE L2 2727 2863 -451 312 189 47 88 chr11 38734910 38735030 -112048523 - MIR SINE MIR -79 183 71 33 85 0 0 chr11 38735265 38735347 -112048206 + AT_rich Low_complexity Low_complexity 1 82 0 1150 197 144 3 chr11 38735792 38736357 -112047196 + LTR50 LTR ERVL 8 792 -3 411 335 94 38 chr11 38737064 38737458 -112046095 + L1ME LINE L1 2 417 -5653 564 193 138 0 chr11 38737809 38737990 -112045563 + L1ME LINE L1 2051 2256 -3824 1486 149 0 21 chr11 38738065 38738306 -112045247 - MER46A DNA MER2_type 0 236 1 797 259 34 65 chr11 38738312 38738574 -112044979 - MIR SINE MIR -6 256 3 252 0 0 0 chr11 38738727 38738755 -112044798 + (TC)n Simple_repeat Simple_repeat 1 28 0 * 369 0 0 0 chr11 38738754 38738795 -112044758 + (CA)n Simple_repeat Simple_repeat 1 41 0 999 244 7 44 chr11 38739590 38739860 -112043693 - MIR SINE MIR 0 262 3 186 209 0 0 chr11 38740283 38740326 -112043227 + (CATATA)n Simple_repeat Simple_repeat 3 45 0 4681 222 54 27 chr11 38740450 38742596 -112040957 + L1MB8 LINE L1 3903 5989 -189 1718 147 70 3 chr11 38742596 38742937 -112040616 - L1MB3 LINE L1 0 6183 5820 3010 132 8 6 chr11 38742947 38743447 -112040106 - L1MB3 LINE L1 -4 6179 5679 4681 222 54 27 chr11 38743447 38743497 -112040056 + L1MB8 LINE L1 5997 6172 -6 226 150 100 0 chr11 38743609 38743669 -112039884 + (TTAAG)n Simple_repeat Simple_repeat 3 68 0 361 167 167 7 chr11 38743778 38743916 -112039637 - HAL1b LINE L1 -251 1097 938 1424 195 63 63 chr11 38744380 38744842 -112038711 + LTR37B LTR ERV1 7 468 0 401 286 32 65 chr11 38744884 38745069 -112038484 - MER5A DNA MER1_type -5 184 6 282 222 0 25 chr11 38745302 38745383 -112038170 + MER116 DNA Mariner 2 80 0 1151 182 80 10 chr11 38746011 38746324 -112037229 + LTR37A LTR ERV1 92 426 0 348 186 82 21 chr11 38747321 38747418 -112036135 - FLAM_C SINE Alu -1 132 30 6605 14 0 0 chr11 38748363 38749149 -112034404 - L1PA2 LINE L1 0 6155 5370 * 6831 26 6 0 chr11 38749145 38749999 -112033554 + L1PA2 LINE L1 4519 5377 -769 2288 90 0 37 chr11 38750214 38750536 -112033017 + AluY SINE Alu 1 310 -1 22 35 0 0 chr11 38750550 38750579 -112032974 + AT_rich Low_complexity Low_complexity 1 29 0 268 306 61 0 chr11 38752103 38752201 -112031352 - L2 LINE L2 -24 3289 3186 2048 138 3 0 chr11 38752824 38753122 -112030431 - AluSx SINE Alu -13 299 1 2171 96 7 7 chr11 38753591 38753893 -112029660 + AluSx SINE Alu 2 303 -9 319 164 90 0 chr11 38754402 38754469 -112029084 - MIR3 SINE MIR -13 195 123 198 314 139 66 chr11 38757531 38757984 -112025569 + L2 LINE L2 1330 1815 -1499 24 0 0 0 chr11 38758253 38758277 -112025276 + AT_rich Low_complexity Low_complexity 1 24 0 324 379 78 4 chr11 38758755 38758998 -112024555 + L2 LINE L2 2412 2672 -642 273 234 65 0 chr11 38759484 38759561 -112023992 + MER58B DNA MER1_type 216 297 -44 306 249 50 134 chr11 38760078 38760167 -112023386 - MIR3 SINE MIR -6 202 138 916 232 72 0 chr11 38760167 38760374 -112023179 - MER58A DNA MER1_type 0 224 3 306 249 50 134 chr11 38760374 38760485 -112023068 - MIR3 SINE MIR -70 138 19 1897 161 3 30 chr11 38760862 38761166 -112022387 + AluJo SINE Alu 1 296 -16 29 28 0 0 chr11 38761593 38761629 -112021924 + AT_rich Low_complexity Low_complexity 1 36 0 2350 93 7 0 chr11 38762391 38762692 -112020861 + AluSp SINE Alu 1 303 -10 2514 72 0 7 chr11 38763076 38763381 -112020172 + AluSp SINE Alu 1 303 -10 2400 84 0 3 chr11 38764665 38764964 -112018589 - AluSg SINE Alu -12 298 1 241 263 179 11 chr11 38765133 38765228 -112018325 - L2 LINE L2 -3 3310 3200 548 70 0 0 chr11 38766318 38766389 -112017164 + Alu SINE Alu 222 292 -20 1008 263 100 43 chr11 38766788 38767520 -112016033 - L2 LINE L2 -1 3312 2518 188 323 108 15 chr11 38767823 38767888 -112015665 - MIR SINE MIR -119 89 19 23 0 0 0 chr11 38768517 38768540 -112015013 + AT_rich Low_complexity Low_complexity 1 23 0 224 250 26 53 chr11 38768889 38768965 -112014588 + MIR SINE MIR 68 141 -121 762 278 98 0 chr11 38769509 38769714 -112013839 + MIR SINE MIR 13 237 -25 506 300 47 43 chr11 38769663 38769896 -112013657 - MIR SINE MIR -17 245 12 * 1930 119 45 0 chr11 38770078 38770364 -112013189 - AluSx SINE Alu -13 299 1 14530 118 40 13 chr11 38770632 38772986 -112010567 - Tigger1 DNA MER2_type 0 2418 1 412 219 20 95 chr11 38772987 38773197 -112010356 - L1ME LINE L1 -449 5672 5479 318 300 0 11 chr11 38773849 38773939 -112009614 + L1MC4 LINE L1 6614 6702 -1340 737 173 22 0 chr11 38773959 38774192 -112009361 + (TA)n Simple_repeat Simple_repeat 1 238 0 330 244 11 33 chr11 38774196 38774286 -112009267 + L1MC4 LINE L1 6615 6702 -1340 632 200 23 0 chr11 38774309 38774484 -112009069 + (TA)n Simple_repeat Simple_repeat 2 180 0 1821 137 58 4 chr11 38774613 38774890 -112008663 - AluJb SINE Alu -20 292 1 24 32 0 0 chr11 38777118 38777149 -112006404 + GC_rich Low_complexity Low_complexity 1 31 0 830 222 36 63 chr11 38777702 38777916 -112005637 + MIR SINE MIR 8 215 -47 1906 174 0 7 chr11 38777916 38778226 -112005327 + AluJb SINE Alu 1 308 -4 830 222 36 63 chr11 38778226 38778263 -112005290 + MIR SINE MIR 215 252 -10 273 274 60 17 chr11 38778582 38778699 -112004854 + MIR SINE MIR 70 191 -71 311 319 18 0 chr11 38778863 38778976 -112004577 + MLT1J2 LTR MaLR 49 163 -287 346 301 39 8 chr11 38779020 38779200 -112004353 + MLT1I LTR MaLR 258 395 -14 507 125 0 0 chr11 38779499 38779579 -112003974 + MADE1 DNA Mariner 1 80 0 1949 194 12 30 chr11 38779652 38780053 -112003500 + MSTD LTR MaLR 3 396 0 1703 183 143 36 chr11 38780276 38780336 -112003217 + MLT1F LTR MaLR 46 98 -444 2342 113 33 33 chr11 38780336 38780700 -112002853 - THE1B LTR MaLR 0 364 1 1703 183 143 36 chr11 38780700 38781086 -112002467 + MLT1F LTR MaLR 98 540 -2 241 195 0 0 chr11 38781088 38781129 -112002424 - L2 LINE L2 -37 3276 3236 2981 122 4 9 chr11 38781129 38781587 -112001966 - MER1A DNA MER1_type 0 529 74 323 377 55 5 chr11 38781589 38781788 -112001765 - L2 LINE L2 -278 3035 2827 2316 43 0 4 chr11 38783054 38783368 -112000185 - AluY SINE Alu 0 313 1 459 235 83 8 chr11 38783480 38783612 -111999941 + LTR37B LTR ERV1 10 151 -317 7503 28 0 3 chr11 38784587 38785687 -111997866 - L1PA4 LINE L1 -3 6152 5057 403 293 94 9 chr11 38786254 38786466 -111997087 - L1ME LINE L1 -351 5770 5541 2110 102 3 35 chr11 38787011 38787324 -111996229 - AluSx SINE Alu -9 303 1 329 243 90 34 chr11 38787613 38787672 -111995881 - L1MC4 LINE L1 -146 7896 7842 2018 155 36 36 chr11 38787672 38787708 -111995845 + THE1B LTR MaLR 3 38 -326 2148 117 3 0 chr11 38787708 38788006 -111995547 - AluSp SINE Alu -14 299 1 2018 155 36 36 chr11 38788006 38788331 -111995222 + THE1B LTR MaLR 37 364 0 11970 90 2 1 chr11 38788331 38789909 -111993644 + THE1B-int LTR MaLR 1 1580 0 2284 123 22 25 chr11 38789909 38790274 -111993279 + THE1B LTR MaLR 1 364 0 329 243 90 34 chr11 38790274 38790389 -111993164 - L1MC4 LINE L1 -199 7843 7710 1738 199 133 77 chr11 38790493 38791237 -111992316 - L1MD1 LINE L1 -5 6631 5825 1576 200 0 13 chr11 38791237 38791537 -111992016 - AluJb SINE Alu -16 296 1 1738 199 133 77 chr11 38791537 38791711 -111991842 - L1MD1 LINE L1 -811 5825 5662 309 181 32 11 chr11 38791738 38791832 -111991721 + CT-rich Low_complexity Low_complexity 1 96 0 2182 228 44 37 chr11 38791849 38792691 -111990862 - L1MD1 LINE L1 -1194 5346 4499 421 254 100 0 chr11 38792721 38792851 -111990702 - L1MD1 LINE L1 -2275 4265 4123 * 8264 67 7 1 chr11 38792850 38794768 -111988785 - L1PA6 LINE L1 -20 6134 4203 * 11930 82 6 3 chr11 38794752 38796487 -111987066 + L1P LINE L1 2498 4237 -1909 4102 213 82 35 chr11 38796480 38798536 -111985017 - L1MD1 LINE L1 -2406 4134 1989 * 21 36 0 0 chr11 38799100 38799128 -111984425 + AT_rich Low_complexity Low_complexity 1 28 0 1168 218 103 39 chr11 38799272 38799707 -111983846 + MER44D DNA MER2_type 9 526 -79 2460 198 19 13 chr11 38799738 38800207 -111983346 + MER70A LTR ERVL 1 472 0 398 307 46 67 chr11 38800310 38800548 -111983005 - L1 LINE L1 -1938 4208 3976 27 0 0 0 chr11 38800576 38800603 -111982950 + AT_rich Low_complexity Low_complexity 1 27 0 28 48 0 0 chr11 38800837 38800879 -111982674 + AT_rich Low_complexity Low_complexity 1 42 0 232 200 67 78 chr11 38801005 38801095 -111982458 - L2 LINE L2 -66 3247 3159 618 164 52 8 chr11 38801124 38801258 -111982295 + MLT1I LTR MaLR 19 158 -251 937 156 45 22 chr11 38801295 38801474 -111982079 - MLT1H LTR MaLR -366 183 1 326 337 99 40 chr11 38801487 38801882 -111981671 - L1 LINE L1 -3044 3102 2685 1959 115 0 4 chr11 38802232 38802493 -111981060 + AluSx SINE Alu 26 285 -27 218 31 0 31 chr11 38802496 38802528 -111981025 + (TAAA)n Simple_repeat Simple_repeat 4 34 0 657 251 122 55 chr11 38802959 38803362 -111980191 + L1ME3A LINE L1 5727 6156 -14 47 61 0 0 chr11 38803418 38803500 -111980053 + AT_rich Low_complexity Low_complexity 1 82 0 2512 51 0 0 chr11 38803508 38803803 -111979750 - AluY SINE Alu -16 295 1 1203 146 19 108 chr11 38803908 38804231 -111979322 + L1MA10 LINE L1 6030 6323 -11 343 301 39 86 chr11 38804323 38804685 -111978868 - HAL1 LINE L1 -1048 1459 1115 1435 192 63 42 chr11 38806309 38806689 -111976864 + MLT1B LTR MaLR 3 390 0 1977 154 24 0 chr11 38806754 38807052 -111976501 - AluSx SINE Alu -7 305 1 2264 173 17 42 chr11 38807361 38807667 -111975886 + MER65C LTR ERV1 1 292 -169 2406 77 0 6 chr11 38807667 38807980 -111975573 - AluY SINE Alu 0 311 1 2264 173 17 42 chr11 38807980 38808146 -111975407 + MER65C LTR ERV1 292 461 0 296 268 12 65 chr11 38808628 38808796 -111974757 - MER113 DNA MER1_type? -34 487 329 380 252 22 7 chr11 38809481 38809620 -111973933 - MER113 DNA MER1_type? -355 166 26 613 154 8 0 chr11 38811090 38811207 -111972346 - L1MC/D LINE L1 -532 5710 5593 475 221 31 0 chr11 38811226 38811353 -111972200 - L1MC3 LINE L1 -25 7760 7630 233 65 0 0 chr11 38811353 38811384 -111972169 - L1MDa LINE L1 -4534 2006 1976 642 250 167 23 chr11 38811390 38811690 -111971863 + MLT1D LTR MaLR 8 350 -155 569 278 90 48 chr11 38811803 38811955 -111971598 - L1MC4a LINE L1 -1834 5974 5830 1752 128 103 34 chr11 38811955 38812306 -111971247 + THE1C LTR MaLR 1 375 0 569 278 90 48 chr11 38812306 38812509 -111971044 - L1MC4a LINE L1 -1978 5830 5604 1488 196 84 25 chr11 38812509 38812867 -111970686 + MLT1B LTR MaLR 5 383 -7 281 297 0 0 chr11 38812872 38812946 -111970607 - L1MC4a LINE L1 -2201 5607 5534 8317 107 34 2 chr11 38813045 38814395 -111969158 - L1PA7 LINE L1 -3167 2979 1587 17224 81 14 2 chr11 38814397 38817551 -111966002 + L1PA7 LINE L1 2983 6154 0 663 318 47 33 chr11 38817961 38818389 -111965164 - MLT1K LTR MaLR 0 588 155 1733 139 24 0 chr11 38818752 38819040 -111964513 - MLT1B LTR MaLR 0 390 96 41062 29 22 1 chr11 38819044 38825068 -111958485 - L1HS LINE L1 -2 6153 2 601 100 55 36 chr11 38825068 38825178 -111958375 - MLT1B LTR MaLR -278 112 1 5607 207 42 21 chr11 38825446 38827660 -111955893 - L1 LINE L1 -3172 4036 1708 1561 251 27 68 chr11 38827784 38828417 -111955136 - L1 LINE L1 -6587 622 16 921 248 84 36 chr11 38828890 38829330 -111954223 + MLT2B1 LTR ERVL 13 520 0 587 234 184 45 chr11 38829353 38829597 -111953956 - L2 LINE L2 -345 2969 2692 452 291 74 0 chr11 38829597 38829745 -111953808 - L2 LINE L2 -801 2513 2355 545 321 38 10 chr11 38829769 38829978 -111953575 - MIR SINE MIR -44 218 4 446 211 9 9 chr11 38830133 38830242 -111953311 - MLT1B LTR MaLR 0 390 282 552 186 0 0 chr11 38830249 38830346 -111953207 + MLT2B2 LTR ERVL 350 446 -69 745 168 0 105 chr11 38830346 38830555 -111952998 - MLT1B LTR MaLR -112 278 92 1810 171 20 9 chr11 38830557 38830968 -111952585 + MLT2B1 LTR ERVL 1 462 -53 21 36 0 0 chr11 38831061 38831089 -111952464 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr11 38831127 38831162 -111952391 + AT_rich Low_complexity Low_complexity 1 35 0 385 351 53 18 chr11 38832355 38832526 -111951027 + MIR3 SINE MIR 16 192 -16 195 42 0 0 chr11 38833513 38833537 -111950016 + (GA)n Simple_repeat Simple_repeat 2 25 0 485 298 190 0 chr11 38834557 38834762 -111948791 + MIR SINE MIR 4 247 -15 181 321 214 0 chr11 38834769 38834881 -111948672 - MIR SINE MIR -105 157 22 388 316 53 38 chr11 38835013 38835222 -111948331 - MIR SINE MIR -10 252 41 221 272 185 56 chr11 38835998 38836160 -111947393 + MER5A DNA MER1_type 1 183 -6 358 318 56 49 chr11 38837112 38837379 -111946174 - L1ME4a LINE L1 -14 6107 5839 429 289 43 65 chr11 38837430 38837800 -111945753 - L1ME4a LINE L1 -312 5809 5448 2908 129 4 2 chr11 38837894 38838493 -111945060 - L1M1 LINE L1 -591 5714 5114 1995 142 0 10 chr11 38839051 38839346 -111944207 - AluSx SINE Alu -17 295 4 256 302 155 17 chr11 38840361 38840477 -111943076 - L2 LINE L2 -3 3310 3179 24 53 0 0 chr11 38840626 38840664 -111942889 + AT_rich Low_complexity Low_complexity 1 38 0 196 309 85 32 chr11 38844942 38845036 -111938517 - L2 LINE L2 -2111 1203 1105 366 312 143 13 chr11 38845053 38845207 -111938346 - MIR SINE MIR -69 193 20 22 56 0 0 chr11 38847201 38847237 -111936316 + AT_rich Low_complexity Low_complexity 1 36 0 2541 70 0 3 chr11 38847494 38847806 -111935747 - AluY SINE Alu 0 311 1 2125 198 42 2 chr11 38847806 38848216 -111935337 - MSTB LTR MaLR 0 426 1 8787 169 28 14 chr11 38848216 38849844 -111933709 - MSTB-int LTR MaLR 0 1651 1 1209 189 14 5 chr11 38849844 38850196 -111933357 - MSTB LTR MaLR 0 428 1 228 246 174 0 chr11 38850227 38850296 -111933257 - MIR SINE MIR -105 103 23 315 294 96 22 chr11 38850303 38850439 -111933114 - MIR SINE MIR 0 262 117 425 297 72 63 chr11 38850868 38851312 -111932241 - L2 LINE L2 -8 3305 2858 421 350 91 52 chr11 38853019 38853625 -111929928 - L2 LINE L2 -4 3268 2565 1937 153 51 20 chr11 38853638 38853991 -111929562 - THE1B LTR MaLR 0 364 1 811 276 62 58 chr11 38854096 38854530 -111929023 + MLT1J2 LTR MaLR 1 436 -14 180 0 0 0 chr11 38854637 38854657 -111928896 + (TC)n Simple_repeat Simple_repeat 2 21 0 306 125 0 0 chr11 38854657 38854705 -111928848 + (TG)n Simple_repeat Simple_repeat 2 49 0 206 340 20 50 chr11 38854717 38854817 -111928736 - L2 LINE L2 -16 3297 3201 206 370 102 24 chr11 38854956 38855083 -111928470 - L2 LINE L2 0 3272 3136 1475 223 3 13 chr11 38855284 38855594 -111927959 + AluJo SINE Alu 6 312 0 274 255 41 165 chr11 38856573 38856840 -111926713 - L2 LINE L2 -219 3053 2820 285 359 57 6 chr11 38857387 38857546 -111926007 + L2 LINE L2 2813 2979 -293 778 322 56 32 chr11 38857549 38857981 -111925572 + MARNA DNA Mariner 53 494 -92 267 31 0 0 chr11 38858119 38858151 -111925402 + (CA)n Simple_repeat Simple_repeat 2 33 0 27 0 0 0 chr11 38858511 38858538 -111925015 + AT_rich Low_complexity Low_complexity 1 27 0 282 29 0 0 chr11 38859027 38859062 -111924491 + (CA)n Simple_repeat Simple_repeat 2 36 0 218 208 0 0 chr11 38859416 38859464 -111924089 + (TA)n Simple_repeat Simple_repeat 1 48 0 1023 198 47 22 chr11 38862952 38863184 -111920369 + MIR SINE MIR 2 239 -23 515 217 35 0 chr11 38863433 38863548 -111920005 + MIR SINE MIR 138 256 -6 201 39 0 0 chr11 38863640 38863666 -111919887 + (T)n Simple_repeat Simple_repeat 1 26 0 485 271 8 131 chr11 38866118 38866362 -111917191 + MIR SINE MIR 1 214 -48 2322 109 0 0 chr11 38866418 38866722 -111916831 - AluSx SINE Alu -8 304 1 289 220 275 0 chr11 38866865 38866974 -111916579 + MIR SINE MIR 98 236 -26 248 250 171 0 chr11 38867624 38867700 -111915853 - L2 LINE L2 -17 3296 3208 2023 165 3 9 chr11 38867703 38868042 -111915511 + MER1B DNA MER1_type 1 337 0 1529 212 10 6 chr11 38869068 38869379 -111914174 - AluJb SINE Alu 0 312 1 252 325 0 8 chr11 38870912 38871032 -111912521 - L1MD2 LINE L1 -37 6320 6087 2197 128 0 0 chr11 38871068 38871366 -111912187 + AluSq SINE Alu 1 298 -15 201 264 19 0 chr11 38872255 38872308 -111911245 + L3 LINE CR1 1521 1574 -3 1841 85 4 16 chr11 38873605 38873851 -111909702 + AluSq SINE Alu 1 243 -70 198 0 0 0 chr11 38873869 38873891 -111909662 + (TAAA)n Simple_repeat Simple_repeat 1 22 0 490 184 27 116 chr11 38874712 38874751 -111908802 - MIR SINE MIR -69 193 152 1212 230 33 12 chr11 38874751 38875081 -111908472 - MER46C DNA MER2_type -1 337 1 490 184 27 116 chr11 38875081 38875099 -111908454 - MIR SINE MIR -110 152 134 2041 113 4 0 chr11 38875099 38875373 -111908180 - AluSp SINE Alu -11 302 28 490 184 27 116 chr11 38875373 38875461 -111908092 - MIR SINE MIR -128 134 60 7042 59 2 1 chr11 38875824 38876778 -111906775 + L1PA5 LINE L1 3235 4189 -1957 1393 50 0 0 chr11 38876776 38876974 -111906579 - L1P LINE L1 -2710 3436 3239 * 9554 45 1 0 chr11 38876983 38878929 -111904624 + L1PA5 LINE L1 4205 6151 -3 1407 223 107 51 chr11 38878936 38879534 -111904019 + LTR9B LTR ERV1 13 612 0 209 246 29 29 chr11 38879750 38879819 -111903734 - L2 LINE L2 -543 2771 2703 587 259 148 7 chr11 38879919 38880224 -111903329 - HAL1 LINE L1 -1044 1463 1116 2160 113 23 0 chr11 38880909 38881210 -111902343 - AluSg SINE Alu -2 308 1 238 380 31 12 chr11 38881455 38881618 -111901935 + L2 LINE L2 2918 3083 -189 2383 86 3 3 chr11 38882207 38882511 -111901042 - AluSx SINE Alu -8 304 1 678 24 0 0 chr11 38882629 38882712 -111900841 - L1PA5 LINE L1 -2 6152 6070 881 287 104 23 chr11 38884815 38885419 -111898134 - L2 LINE L2 -222 3091 2444 367 218 15 105 chr11 38885815 38885948 -111897605 + MER5C DNA MER1_type 1 121 -203 462 149 9 47 chr11 38885972 38886079 -111897474 + MER5C DNA MER1_type 222 324 0 2232 26 7 0 chr11 38886193 38886462 -111897091 - L1PA3 LINE L1 0 6155 5885 341 323 11 0 chr11 38886706 38886799 -111896754 - MIR3 SINE MIR -3 205 112 407 341 18 6 chr11 38887478 38887642 -111895911 + L3 LINE CR1 1050 1215 -362 297 354 47 24 chr11 38887704 38887831 -111895722 - L2 LINE L2 -16 3256 3127 623 308 90 11 chr11 38887999 38888265 -111895288 + L3 LINE CR1 1215 1501 -76 232 306 111 0 chr11 38888302 38888374 -111895179 + MIR SINE MIR 13 92 -170 188 293 0 0 chr11 38888408 38888449 -111895104 + L2 LINE L2 3254 3294 -19 191 328 15 15 chr11 38888463 38888530 -111895023 + L3 LINE CR1 1509 1575 -2 226 362 53 0 chr11 38889190 38889284 -111894269 - MIR3 SINE MIR -7 201 103 547 318 123 0 chr11 38889326 38889537 -111894016 + MIR SINE MIR 23 259 -3 218 81 27 0 chr11 38889542 38889579 -111893974 + (CTG)n Simple_repeat Simple_repeat 1 38 0 269 263 187 40 chr11 38889651 38889849 -111893704 + Charlie8 DNA MER1_type 35 261 -2156 426 252 126 38 chr11 38890017 38890176 -111893377 + MER5B DNA MER1_type 1 173 -5 410 333 58 62 chr11 38892134 38892410 -111891143 - L2 LINE L2 0 3272 2998 10217 24 3 0 chr11 38892654 38894635 -111888918 - L1PA2 LINE L1 0 6155 4171 716 171 0 0 chr11 38895485 38895608 -111887945 + MER3 DNA MER1_type 48 123 -86 1439 163 29 3 chr11 38895615 38895928 -111887625 + MER3 DNA MER1_type 2234 2554 0 309 162 0 0 chr11 38895928 38895996 -111887557 + (TTTA)n Simple_repeat Simple_repeat 2 69 0 185 224 0 105 chr11 38896053 38896129 -111887424 + MER5B DNA MER1_type 2 69 -109 308 289 41 10 chr11 38896186 38896283 -111887270 + MER5A DNA MER1_type 90 189 0 339 295 36 9 chr11 38896463 38896575 -111886978 - MIR SINE MIR -67 195 81 401 250 18 122 chr11 38896689 38896853 -111886700 - MIR SINE MIR -21 241 95 993 130 62 6 chr11 38896853 38897015 -111886538 + MLT1B LTR MaLR 1 171 -219 303 244 76 76 chr11 38897184 38897315 -111886238 + L2 LINE L2 3180 3310 -3 257 220 0 0 chr11 38897782 38897832 -111885721 - MIR SINE MIR -77 131 82 22 70 0 0 chr11 38899635 38899678 -111883875 + AT_rich Low_complexity Low_complexity 1 43 0 295 286 48 12 chr11 38900426 38900510 -111883043 - L2 LINE L2 -31 3241 3155 250 274 155 60 chr11 38901255 38901423 -111882130 + MIR SINE MIR 31 214 -48 269 326 51 51 chr11 38901832 38901970 -111881583 - MER5A DNA MER1_type -12 177 40 225 154 0 0 chr11 38902703 38902742 -111880811 + (TA)n Simple_repeat Simple_repeat 1 39 0 223 167 0 0 chr11 38902933 38902975 -111880578 + (CA)n Simple_repeat Simple_repeat 1 42 0 942 290 121 19 chr11 38902992 38903413 -111880140 + MLT1J LTR MaLR 45 508 -3 837 248 64 41 chr11 38903413 38903707 -111879846 + MLT1J LTR MaLR 209 509 -2 717 270 53 0 chr11 38903800 38903989 -111879564 + MIR SINE MIR 12 210 -52 21 36 0 0 chr11 38903991 38904019 -111879534 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr11 38904073 38904095 -111879458 + AT_rich Low_complexity Low_complexity 1 22 0 545 260 77 24 chr11 38904165 38904373 -111879180 - L1ME4a LINE L1 -228 5893 5675 575 247 145 44 chr11 38904373 38904821 -111878732 - L2 LINE L2 -25 3288 2771 245 380 20 10 chr11 38905105 38905205 -111878348 + L2 LINE L2 3149 3249 -23 1963 211 37 5 chr11 38905659 38906095 -111877458 + L1MB7 LINE L1 5724 6173 -11 350 323 17 83 chr11 38907021 38907321 -111876232 + L2 LINE L2 2919 3198 -74 846 269 9 14 chr11 38910758 38910974 -111872579 + MIR SINE MIR 9 223 -39 29 28 0 0 chr11 38910995 38911031 -111872522 + AT_rich Low_complexity Low_complexity 1 36 0 304 356 40 27 chr11 38911031 38911253 -111872300 + L2 LINE L2 2194 2418 -896 306 251 228 6 chr11 38911311 38911478 -111872075 + L1ME LINE L1 5650 5853 -268 301 203 0 17 chr11 38911766 38911825 -111871728 + L2 LINE L2 3250 3307 -6 202 363 106 9 chr11 38913188 38913301 -111870252 - MIR SINE MIR -63 145 22 22 35 0 0 chr11 38915541 38915570 -111867983 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr11 38915766 38915787 -111867766 + AT_rich Low_complexity Low_complexity 1 21 0 434 311 0 46 chr11 38916393 38916544 -111867009 - MER5A DNA MER1_type -38 151 8 1941 124 0 60 chr11 38916728 38917042 -111866511 - AluSx SINE Alu -17 295 1 1805 154 114 40 chr11 38918270 38918672 -111864881 - MSTB1 LTR MaLR 0 432 1 317 290 0 0 chr11 38918872 38918965 -111864588 - L1ME LINE L1 -5947 123 31 5466 178 69 21 chr11 38919029 38920268 -111863285 + Charlie1 DNA MER1_type 1424 2722 -39 4848 43 0 0 chr11 38920319 38920930 -111862623 - L1P LINE L1 -3199 2947 2337 16366 69 1 1 chr11 38920930 38923908 -111859645 + L1PA5 LINE L1 3221 6161 0 200 344 16 16 chr11 38924808 38924872 -111858681 - L2 LINE L2 -14 3299 3236 330 267 216 11 chr11 38925533 38925709 -111857844 + MIR SINE MIR 3 214 -48 576 306 57 42 chr11 38927392 38927775 -111855778 - MLT1J2 LTR MaLR 0 450 62 1212 148 88 0 chr11 38928769 38928986 -111854567 + MER46A DNA MER2_type 1 236 0 776 90 37 8 chr11 38929265 38929399 -111854154 - L1MA5 LINE L1 0 6300 6163 7843 52 5 0 chr11 38929462 38931205 -111852348 - L1PA5 LINE L1 -8 6146 4390 2784 98 20 0 chr11 38931307 38931707 -111851846 - L1PA5 LINE L1 -1920 4226 3819 305 250 0 0 chr11 38932627 38932687 -111850866 + L2 LINE L2 3208 3267 -5 245 326 141 61 chr11 38932762 38933124 -111850429 + L2 LINE L2 1633 2023 -1291 243 114 0 0 chr11 38933146 38933190 -111850363 + (TTTTA)n Simple_repeat Simple_repeat 1 44 0 632 27 0 0 chr11 38933190 38933263 -111850290 - L1PA5 LINE L1 -24 6130 6058 196 333 0 17 chr11 38933440 38933500 -111850053 + L2 LINE L2 2234 2292 -1022 254 222 212 20 chr11 38933774 38933873 -111849680 + L2 LINE L2 3196 3313 0 526 347 97 56 chr11 38933970 38934382 -111849171 + L2 LINE L2 2841 3269 -3 29 0 0 0 chr11 38934617 38934646 -111848907 + AT_rich Low_complexity Low_complexity 1 29 0 2052 140 0 0 chr11 38935114 38935406 -111848147 + AluSx SINE Alu 1 292 -20 390 272 147 7 chr11 38936441 38936577 -111846976 + MIR SINE MIR 32 186 -76 535 201 45 15 chr11 38938860 38938994 -111844559 - L1MC1 LINE L1 -1 6332 6195 198 0 0 0 chr11 38939033 38939055 -111844498 + (TG)n Simple_repeat Simple_repeat 1 22 0 2788 102 39 2 chr11 38939055 38939494 -111844059 - L1MB1 LINE L1 -11 6157 5703 232 289 13 0 chr11 38939498 38939574 -111843979 + (TG)n Simple_repeat Simple_repeat 2 78 0 314 311 185 30 chr11 38939658 38939793 -111843760 - L2 LINE L2 -1 3271 3116 297 209 109 64 chr11 38939794 38939904 -111843649 + MER3 DNA MER1_type 48 162 -47 726 174 0 0 chr11 38939913 38940045 -111843508 + MER3 DNA MER1_type 2234 2365 0 * 1893 172 88 30 chr11 38940042 38940078 -111843475 - MLT2A2 LTR ERVL 0 554 522 468 51 0 0 chr11 38940078 38940137 -111843416 + (TA)n Simple_repeat Simple_repeat 2 60 0 1893 172 88 30 chr11 38940137 38940615 -111842938 - MLT2A2 LTR ERVL -32 522 1 802 183 102 24 chr11 38940617 38940863 -111842690 + MER3 DNA MER1_type 2359 2623 0 232 349 108 28 chr11 38940948 38941420 -111842133 - L2 LINE L2 -212 3060 2554 1600 156 38 35 chr11 38941600 38941889 -111841664 - AluJo SINE Alu -22 290 1 1566 170 0 4 chr11 38942754 38943001 -111840552 - AluJo SINE Alu -64 248 3 656 349 77 25 chr11 38943369 38943813 -111839740 + L2 LINE L2 2805 3271 -1 1678 236 81 44 chr11 38944173 38944791 -111838762 + LTR9B LTR ERV1 4 644 0 400 121 17 0 chr11 38944836 38944894 -111838659 + HUERS-P3b LTR ERV1 38 96 -7322 647 217 76 19 chr11 38944897 38945054 -111838499 + HUERS-P3b LTR ERV1 409 574 -6844 * 6444 154 24 34 chr11 38945049 38946192 -111837361 + HUERS-P3b LTR ERV1 747 1877 -5541 3467 72 88 22 chr11 38946191 38946363 -111837190 + HUERS-P3b LTR ERV1 2111 2270 -5148 * 2331 100 0 0 chr11 38946363 38946662 -111836891 + AluSg SINE Alu 1 299 -11 3467 72 88 22 chr11 38946662 38946988 -111836565 + HUERS-P3b LTR ERV1 2270 2642 -4776 2259 196 45 2 chr11 38946988 38947411 -111836142 - LTR8 LTR ERV1 -250 441 1 7895 159 56 52 chr11 38947411 38948394 -111835159 + HUERS-P3 LTR ERV1 1008 1985 -5433 2105 106 14 0 chr11 38948394 38948678 -111834875 + AluSx SINE Alu 1 288 -24 7895 159 56 52 chr11 38948678 38949639 -111833914 + HUERS-P3 LTR ERV1 1985 2940 -4478 2367 100 0 0 chr11 38949639 38949939 -111833614 - AluY SINE Alu -11 300 1 7895 159 56 52 chr11 38949939 38951149 -111832404 + HUERS-P3 LTR ERV1 2940 4143 -3275 2170 87 3 7 chr11 38951149 38951460 -111832093 - AluSp SINE Alu 0 310 1 7895 159 56 52 chr11 38951460 38951624 -111831929 + HUERS-P3 LTR ERV1 4143 6945 -473 1353 197 4 16 chr11 38951894 38952186 -111831367 + HUERS-P3 LTR ERV1 7163 8919 0 23892 90 8 9 chr11 38952217 38955185 -111828368 + L1P LINE L1 5 2971 -3175 2929 12 0 3 chr11 38955185 38955504 -111828049 - AluYb8 SINE Alu 0 318 1 23892 90 8 9 chr11 38955504 38955796 -111827757 + L1P LINE L1 2971 3262 -2884 283 358 108 0 chr11 38956503 38956679 -111826874 + MIR SINE MIR 34 228 -34 397 198 72 63 chr11 38956916 38957027 -111826526 - MER103 DNA DNA -41 125 14 195 204 0 0 chr11 38957030 38957074 -111826479 + CT-rich Low_complexity Low_complexity 4 47 0 436 217 252 0 chr11 38957311 38957426 -111826127 - MER5A DNA MER1_type -6 183 40 367 246 183 48 chr11 38957414 38957540 -111826013 + MER5A DNA MER1_type 47 189 0 * 806 180 197 11 chr11 38957547 38957730 -111825823 - MER20 DNA MER1_type 0 219 3 612 250 70 0 chr11 38957929 38958085 -111825468 - MIR SINE MIR -21 241 75 240 250 0 28 chr11 38958762 38958834 -111824719 + L3 LINE CR1 792 861 -716 911 296 0 9 chr11 38958903 38959136 -111824417 - MIR SINE MIR -19 243 13 1349 186 73 36 chr11 38960414 38960715 -111822838 - AluJo SINE Alu 0 312 1 441 313 27 12 chr11 38960859 38961026 -111822527 - MIR SINE MIR -42 166 2 550 93 0 0 chr11 38961111 38961186 -111822367 - MADE1 DNA Mariner -5 75 1 2121 143 14 172 chr11 38961341 38961807 -111821746 + LTR32 LTR ERVL 1 367 -104 2285 56 0 24 chr11 38961807 38962134 -111821419 + AluY SINE Alu 1 320 0 2121 143 14 172 chr11 38962134 38962225 -111821328 + LTR32 LTR ERVL 367 471 0 3413 181 25 32 chr11 38962913 38963604 -111819949 - MER67C LTR ERV1 -24 686 1 1124 223 103 107 chr11 38964403 38964994 -111818559 + LTR49 LTR ERV1 5 593 -2 3192 38 8 5 chr11 38965538 38965908 -111817645 - L1PA8 LINE L1 0 6172 5802 515 57 14 0 chr11 38965908 38965978 -111817575 + L1PA8 LINE L1 5728 5798 -374 2031 89 0 4 chr11 38965979 38966248 -111817305 - AluY SINE Alu -1 310 43 452 293 102 18 chr11 38968966 38969187 -111814366 - MIR SINE MIR -23 239 4 224 343 48 0 chr11 38969298 38969403 -111814150 + L2 LINE L2 3180 3289 -24 1049 229 5 0 chr11 38970969 38971157 -111812396 - MER5A DNA MER1_type 0 189 1 351 263 172 0 chr11 38971362 38971516 -111812037 + MIR SINE MIR 21 200 -62 353 261 11 23 chr11 38972196 38972284 -111811269 + MIR3 SINE MIR 81 167 -41 180 0 0 0 chr11 38973116 38973136 -111810417 + (T)n Simple_repeat Simple_repeat 1 20 0 219 114 0 0 chr11 38973616 38973651 -111809902 + (GA)n Simple_repeat Simple_repeat 2 36 0 210 37 0 0 chr11 38975068 38975095 -111808458 + (TCCC)n Simple_repeat Simple_repeat 3 29 0 299 312 116 98 chr11 38975097 38975536 -111808017 - L2 LINE L2 -14 3258 2812 2180 116 0 0 chr11 38975648 38975940 -111807613 + AluSg SINE Alu 1 292 -18 231 319 69 0 chr11 38976354 38976426 -111807127 - L2 LINE L2 -54 3218 3142 241 322 61 9 chr11 38976534 38976649 -111806904 - L2 LINE L2 -571 2743 2623 2060 135 0 13 chr11 38977189 38977492 -111806061 + AluSx SINE Alu 5 303 -9 558 242 230 17 chr11 38977513 38977691 -111805862 - MIR SINE MIR -41 221 6 2191 164 63 0 chr11 38979042 38979409 -111804144 + MLT1B LTR MaLR 1 390 0 350 222 11 22 chr11 38980243 38980333 -111803220 + MER117 DNA MER1_type 2 90 -107 2387 72 7 3 chr11 38980468 38980761 -111802792 + AluY SINE Alu 1 294 -17 872 100 23 8 chr11 38980761 38980885 -111802668 - L1PB2 LINE L1 -6 6145 6020 228 321 143 0 chr11 38980981 38981065 -111802488 + Charlie8 DNA MER1_type 132 227 -2190 279 356 60 42 chr11 38981531 38981978 -111801575 + L2 LINE L2 2250 2777 -537 2232 96 10 3 chr11 38982468 38982771 -111800782 - AluSg SINE Alu -5 305 1 958 189 74 0 chr11 38982872 38983062 -111800491 - MER3 DNA MER1_type -1 208 5 183 80 0 0 chr11 38983732 38983757 -111799796 + (TAA)n Simple_repeat Simple_repeat 3 27 0 217 305 32 21 chr11 38983757 38983852 -111799701 - MIR SINE MIR -8 254 159 336 256 120 0 chr11 38983906 38984039 -111799514 + MIR SINE MIR 114 262 0 2351 93 0 7 chr11 38984047 38984349 -111799204 - AluSp SINE Alu -13 300 1 213 315 8 92 chr11 38984349 38984479 -111799074 - MIR SINE MIR -111 151 33 224 356 102 8 chr11 38984882 38985000 -111798553 - L2 LINE L2 -2 3270 3142 223 323 138 24 chr11 38985280 38985447 -111798106 - L2 LINE L2 -527 2787 2602 240 298 18 0 chr11 38985558 38985615 -111797938 - L2 LINE L2 -21 3292 3235 494 285 149 42 chr11 38986989 38987277 -111796276 + MLT1J2 LTR MaLR 57 375 -75 1022 215 132 87 chr11 38987285 38987709 -111795844 - LTR50 LTR ERVL -352 443 1 319 138 77 31 chr11 38987709 38987770 -111795783 + MLT1J2 LTR MaLR 366 429 -21 1652 164 64 0 chr11 38988148 38988429 -111795124 - AluJo SINE Alu -13 299 1 533 203 61 108 chr11 38988457 38988669 -111794884 - L1MC3 LINE L1 -829 6956 6755 1234 253 98 35 chr11 38988729 38989180 -111794373 + L2 LINE L2 2827 3305 -8 333 335 61 31 chr11 38989234 38989590 -111793963 + L2 LINE L2 2692 3071 -201 1310 218 47 66 chr11 38989676 38990057 -111793496 - MLT1A2 LTR MaLR 0 374 1 210 291 239 8 chr11 38991476 38991593 -111791960 + MIR SINE MIR 119 262 0 580 310 22 5 chr11 38991782 38991966 -111791587 - MER5A DNA MER1_type -1 188 2 607 316 63 26 chr11 38992018 38992586 -111790967 - MLT2E LTR ERVL 0 628 1 283 176 29 73 chr11 38993037 38993061 -111790492 + MLT1D LTR MaLR 1 25 -480 2165 148 13 48 chr11 38993061 38993438 -111790115 - THE1B LTR MaLR 0 364 1 283 176 29 73 chr11 38993438 38993481 -111790072 + MLT1D LTR MaLR 25 65 -440 28 0 0 0 chr11 38993496 38993524 -111790029 + AT_rich Low_complexity Low_complexity 1 28 0 857 199 28 25 chr11 38993528 38993884 -111789669 + MLT1D LTR MaLR 61 502 -3 387 0 0 0 chr11 38993895 38993938 -111789615 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2331 133 42 31 chr11 38994504 38994888 -111788665 - MLT1B LTR MaLR 0 390 3 615 249 127 21 chr11 38995354 38995591 -111787962 + MLT1G LTR MaLR 15 276 -314 402 267 8 17 chr11 38995599 38995719 -111787834 + MLT1G LTR MaLR 437 555 0 559 330 106 4 chr11 38996253 38996489 -111787064 + MIR SINE MIR 2 261 -1 290 356 96 0 chr11 38996548 38996652 -111786901 + L2 LINE L2 3199 3312 -1 365 314 19 0 chr11 38997280 38997385 -111786168 - MIR SINE MIR -2 260 154 974 222 11 0 chr11 38997617 38997797 -111785756 + MER5A DNA MER1_type 3 184 -5 971 146 48 0 chr11 38998021 38998186 -111785367 + L1PBa LINE L1 28 200 -6663 10487 153 38 32 chr11 38998186 39000581 -111782972 + L1PBa LINE L1 634 3013 -3849 2100 125 26 3 chr11 39000581 39000886 -111782667 + AluSx SINE Alu 1 312 0 10487 153 38 32 chr11 39000886 39001122 -111782431 + L1PBa LINE L1 3013 3246 -3616 733 118 0 0 chr11 39001122 39001215 -111782338 + AluS SINE Alu 3 95 -217 1950 138 31 0 chr11 39001215 39001504 -111782049 + AluSx SINE Alu 1 298 -14 10487 153 38 32 chr11 39001504 39003066 -111780487 + L1PBa LINE L1 3245 5132 -1730 505 358 19 5 chr11 39003098 39003305 -111780248 + L2 LINE L2 2678 2887 -427 6649 185 39 17 chr11 39003321 39005005 -111778548 - L1M1 LINE L1 -4065 1263 10 323 320 53 27 chr11 39005013 39005163 -111778390 + L2 LINE L2 2896 3049 -223 768 236 136 48 chr11 39005188 39005519 -111778034 - MLT1G LTR MaLR -215 375 16 186 296 61 82 chr11 39005589 39005687 -111777866 + L2 LINE L2 3176 3271 -1 329 273 73 36 chr11 39005758 39005868 -111777685 + L2 LINE L2 3200 3313 0 330 342 58 89 chr11 39006523 39006767 -111776786 + L2 LINE L2 2246 2496 -818 462 292 7 0 chr11 39006767 39006904 -111776649 - MIR SINE MIR -2 260 123 330 342 58 89 chr11 39006904 39007231 -111776322 + L2 LINE L2 2496 2931 -383 791 256 49 34 chr11 39007235 39007501 -111776052 - L2 LINE L2 0 3313 3044 966 262 72 23 chr11 39007505 39007810 -111775743 - L2 LINE L2 -372 2942 2623 492 163 0 0 chr11 39008451 39008537 -111775016 - L1MA4 LINE L1 -2 6298 6213 554 167 10 0 chr11 39008537 39008633 -111774920 + L1MA4 LINE L1 5795 5891 -409 561 183 58 0 chr11 39009196 39009316 -111774237 + Charlie5 DNA MER1_type 1 127 -2485 * 1591 176 52 29 chr11 39009314 39009695 -111773858 + Charlie5 DNA MER1_type 2235 2624 0 1986 180 118 9 chr11 39010422 39010873 -111772680 + Charlie1b DNA MER1_type 1 500 -23 445 254 58 29 chr11 39010998 39011136 -111772417 - MER5A DNA MER1_type 0 189 48 415 314 41 37 chr11 39012167 39012438 -111771115 + MLT1K LTR MaLR 275 546 -42 2071 65 24 21 chr11 39012472 39012763 -111770790 - AluSx SINE Alu -20 292 1 477 244 191 12 chr11 39013540 39013582 -111769971 + MER3 DNA MER1_type 1 34 -175 2292 93 3 3 chr11 39013582 39013883 -111769670 - AluSg SINE Alu -9 301 1 477 244 191 12 chr11 39013883 39014008 -111769545 + MER3 DNA MER1_type 34 198 -11 194 365 82 12 chr11 39014123 39014208 -111769345 + MIR SINE MIR 24 114 -94 379 264 49 49 chr11 39015278 39015422 -111768131 + MER117 DNA MER1_type 1 144 -53 345 246 85 51 chr11 39015427 39015545 -111768008 + L2 LINE L2 3190 3311 -2 673 255 132 17 chr11 39015965 39016200 -111767353 - MIR SINE MIR 0 262 1 270 252 73 57 chr11 39016619 39016742 -111766811 - L3b LINE CR1 -140 1443 1319 333 196 0 0 chr11 39016885 39016941 -111766612 - MLT1E2 LTR MaLR 0 626 571 1452 184 54 0 chr11 39016945 39017206 -111766347 + AluJo SINE Alu 1 275 -37 506 305 6 18 chr11 39017320 39017484 -111766069 + MIR SINE MIR 3 164 -98 375 311 51 25 chr11 39017828 39018024 -111765529 - MLT1K LTR MaLR -379 209 9 269 341 96 18 chr11 39018571 39018738 -111764815 - MIR SINE MIR -81 181 2 22 0 0 0 chr11 39019652 39019674 -111763879 + AT_rich Low_complexity Low_complexity 1 22 0 2274 127 0 0 chr11 39020209 39020517 -111763036 - AluSx SINE Alu -2 310 3 917 178 18 18 chr11 39021409 39021578 -111761975 + MER58B DNA MER1_type 173 341 0 270 317 148 47 chr11 39021578 39021916 -111761637 - L2 LINE L2 -52 3220 2849 2248 117 0 0 chr11 39022113 39022412 -111761141 + AluSq SINE Alu 1 299 -14 2026 165 209 0 chr11 39022528 39022958 -111760595 + MLT2B1 LTR ERVL 1 520 0 22 0 0 0 chr11 39023095 39023117 -111760436 + AT_rich Low_complexity Low_complexity 1 22 0 199 283 0 17 chr11 39023144 39023204 -111760349 + L2 LINE L2 3214 3272 0 1785 197 44 87 chr11 39023969 39024016 -111759537 - MLT2B3 LTR ERVL -4 550 502 1051 188 181 56 chr11 39024016 39024320 -111759233 - MER2 DNA MER2_type -2 342 1 1785 197 44 87 chr11 39024320 39024845 -111758708 - MLT2B3 LTR ERVL -52 502 3 229 139 0 0 chr11 39025529 39025565 -111757988 - MIR SINE MIR -109 153 118 25 31 0 0 chr11 39026082 39026114 -111757439 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr11 39026248 39026270 -111757283 + AT_rich Low_complexity Low_complexity 1 22 0 2093 142 3 0 chr11 39026303 39026612 -111756941 + AluSx SINE Alu 1 310 -2 199 378 39 19 chr11 39026746 39026902 -111756651 + MIR SINE MIR 2 160 -102 25 53 0 18 chr11 39026937 39026975 -111756578 + AT_rich Low_complexity Low_complexity 1 39 -17 1004 58 0 0 chr11 39026975 39027095 -111756458 - L1MA1 LINE L1 -7 6295 6176 25 53 0 18 chr11 39027095 39027113 -111756440 + AT_rich Low_complexity Low_complexity 39 56 0 21 57 0 0 chr11 39027196 39027231 -111756322 + AT_rich Low_complexity Low_complexity 1 35 0 439 175 232 43 chr11 39027265 39027476 -111756077 - L1ME4a LINE L1 -67 6054 5804 1742 267 103 32 chr11 39028573 39029127 -111754426 + MLT1E LTR MaLR 1 593 0 2333 50 0 0 chr11 39030304 39030625 -111752928 - AluY SINE Alu 0 322 2 407 253 164 20 chr11 39030818 39030964 -111752589 + LTR67 LTR ERVL 383 549 -8 282 333 9 9 chr11 39032601 39032712 -111750841 - MIR3 SINE MIR -7 201 91 252 264 0 14 chr11 39032881 39032953 -111750600 + CT-rich Low_complexity Low_complexity 2 72 0 1030 214 27 41 chr11 39032987 39033207 -111750346 + MER20 DNA MER1_type 3 219 0 1194 284 145 20 chr11 39034540 39034995 -111748558 - LTR33 LTR ERVL -9 512 1 579 289 54 25 chr11 39035019 39035223 -111748330 + MIR SINE MIR 46 255 -7 923 296 109 35 chr11 39035657 39036062 -111747491 + LTR16A LTR ERVL 16 450 0 231 279 15 15 chr11 39036229 39036297 -111747256 + 7SK RNA RNA 46 113 -80 21 36 0 0 chr11 39038996 39039024 -111744529 + AT_rich Low_complexity Low_complexity 1 28 0 597 356 20 4 chr11 39039373 39039623 -111743930 + MIR SINE MIR 4 257 -5 327 244 168 0 chr11 39040552 39040671 -111742882 - MIR SINE MIR -12 250 112 * 2432 323 205 13 chr11 39040634 39042062 -111741491 + L2 LINE L2 1388 3164 -149 5349 78 34 1 chr11 39042062 39042767 -111740786 - L1PB2 LINE L1 -1 6150 5423 2432 323 205 13 chr11 39042767 39042951 -111740602 + L2 LINE L2 3164 3311 -2 297 0 0 0 chr11 39043864 39043897 -111739656 + (TA)n Simple_repeat Simple_repeat 1 33 0 1583 204 80 49 chr11 39044025 39044477 -111739076 + MLT1C LTR MaLR 1 466 -1 292 284 21 21 chr11 39044628 39044723 -111738830 + L2 LINE L2 2945 3039 -233 720 201 121 19 chr11 39044730 39044994 -111738559 + MER33 DNA MER1_type 6 296 -28 281 298 48 57 chr11 39045083 39045115 -111738438 + L2 LINE L2 3171 3202 -111 2328 89 0 22 chr11 39045115 39045430 -111738123 - AluSx SINE Alu -4 308 1 281 298 48 57 chr11 39045430 39045521 -111738032 + L2 LINE L2 3202 3293 -20 221 290 51 108 chr11 39046209 39046423 -111737130 - L2 LINE L2 -1 3271 3070 269 319 103 38 chr11 39046446 39046659 -111736894 + MIR SINE MIR 36 262 0 195 100 0 0 chr11 39047609 39047639 -111735914 + (GA)n Simple_repeat Simple_repeat 2 31 0 2314 98 0 0 chr11 39048018 39048314 -111735239 - AluSg SINE Alu -14 296 1 786 336 44 19 chr11 39048554 39048917 -111734636 - LTR16C LTR ERVL -4 487 116 435 63 0 0 chr11 39049720 39049783 -111733770 + (CA)n Simple_repeat Simple_repeat 1 63 0 300 253 235 24 chr11 39051374 39051544 -111732009 - MIR SINE MIR 0 262 57 236 213 16 0 chr11 39052019 39052080 -111731473 + MER103 DNA DNA 92 153 -13 1067 161 86 17 chr11 39052431 39052739 -111730814 + L1MA8 LINE L1 5966 6291 0 266 269 154 58 chr11 39052803 39053011 -111730542 - L2 LINE L2 0 3313 3086 360 315 55 33 chr11 39053301 39053482 -111730071 + MIR3 SINE MIR 11 195 -13 329 162 15 0 chr11 39054161 39054229 -111729324 + (TG)n Simple_repeat Simple_repeat 1 69 0 917 262 65 10 chr11 39054407 39054716 -111728837 + LTR16A LTR ERVL 113 438 -12 268 349 142 14 chr11 39054720 39054938 -111728615 + L2 LINE L2 2679 2924 -390 24 32 0 0 chr11 39054943 39054974 -111728579 + AT_rich Low_complexity Low_complexity 1 31 0 624 299 72 5 chr11 39055043 39055237 -111728316 - MIR SINE MIR 0 262 56 2621 156 21 28 chr11 39055382 39055915 -111727638 - L1MA9 LINE L1 -2 6310 5782 210 165 24 12 chr11 39056002 39056087 -111727466 + (TA)n Simple_repeat Simple_repeat 2 87 0 318 200 22 22 chr11 39056113 39056293 -111727260 + (TA)n Simple_repeat Simple_repeat 1 180 0 279 214 6 13 chr11 39056376 39056535 -111727018 + (TA)n Simple_repeat Simple_repeat 2 159 0 5738 65 1 0 chr11 39056566 39057334 -111726219 - L1PA7 LINE L1 0 6154 5386 1291 133 68 12 chr11 39057327 39057576 -111725977 - L1MA9 LINE L1 -536 5776 5514 * 206 316 89 0 chr11 39058018 39058097 -111725456 + MIR SINE MIR 119 204 -58 321 267 0 95 chr11 39058410 39058515 -111725038 - MIR SINE MIR -73 135 41 383 325 50 0 chr11 39058696 39058816 -111724737 + L2 LINE L2 3134 3259 -13 717 202 89 65 chr11 39059181 39059428 -111724125 - L2 LINE L2 0 3313 3061 12893 217 17 19 chr11 39059441 39062036 -111721517 - L1PA16 LINE L1 -9 7595 5010 1815 175 38 14 chr11 39062036 39062402 -111721151 - THE1C LTR MaLR 0 375 1 12893 217 17 19 chr11 39062402 39064446 -111719107 - L1PA16 LINE L1 -2594 5010 2964 184 300 0 17 chr11 39064497 39064557 -111718996 - L2 LINE L2 0 3313 3255 22 0 0 0 chr11 39064584 39064606 -111718947 + AT_rich Low_complexity Low_complexity 1 22 0 255 200 0 0 chr11 39064743 39064798 -111718755 - MLT2B2 LTR ERVL 0 515 461 2652 254 23 12 chr11 39064937 39065766 -111717787 - L1PA16 LINE L1 -4513 3068 2231 660 343 48 10 chr11 39066481 39066880 -111716673 - L1PA16 LINE L1 -7166 415 2 207 167 0 0 chr11 39068630 39068672 -111714881 + (TG)n Simple_repeat Simple_repeat 2 43 0 326 233 27 0 chr11 39069797 39069870 -111713683 + MER81 DNA DNA 40 114 0 338 292 62 7 chr11 39069878 39070022 -111713531 - MIR SINE MIR -20 242 91 342 268 65 0 chr11 39070022 39070145 -111713408 + L1ME4a LINE L1 5990 6120 -1 1150 93 32 14 chr11 39070965 39071181 -111712372 + L1PBa LINE L1 1888 2107 -4756 345 248 97 9 chr11 39071193 39071306 -111712247 - MIR SINE MIR -67 141 19 252 59 0 0 chr11 39071906 39071940 -111711613 + (GA)n Simple_repeat Simple_repeat 1 34 0 716 284 59 9 chr11 39071994 39072216 -111711337 - MIR SINE MIR -23 239 7 2367 45 3 0 chr11 39073270 39073559 -111709994 - L1PA3 LINE L1 -3 6152 5863 272 410 0 0 chr11 39074044 39074144 -111709409 - L2 LINE L2 -489 2825 2726 436 273 18 0 chr11 39075679 39075789 -111707764 + MER81 DNA DNA 3 114 0 414 39 0 0 chr11 39075811 39075863 -111707690 + (TG)n Simple_repeat Simple_repeat 1 52 0 23 0 0 0 chr11 39075949 39075972 -111707581 + AT_rich Low_complexity Low_complexity 1 23 0 392 141 30 10 chr11 39076548 39076647 -111706906 + (TCTA)n Simple_repeat Simple_repeat 4 104 0 683 335 115 24 chr11 39076712 39077085 -111706468 + L2 LINE L2 124 530 -2784 247 303 30 24 chr11 39078640 39078805 -111704748 + HAL1b LINE L1 120 285 -1063 683 233 22 61 chr11 39079088 39079316 -111704237 + MER20 DNA MER1_type 1 219 0 536 282 35 20 chr11 39079326 39079528 -111704025 + MLT1J LTR MaLR 165 369 -142 1640 221 69 118 chr11 39079592 39080084 -111703469 - L2 LINE L2 -507 2807 2288 296 185 154 0 chr11 39080084 39080149 -111703404 + MER116 DNA Mariner 5 79 -1 1640 221 69 118 chr11 39080149 39080272 -111703281 - L2 LINE L2 -1026 2288 2161 2513 117 94 3 chr11 39080478 39080681 -111702872 + MSTA LTR MaLR 1 184 -244 225 0 0 0 chr11 39080681 39080706 -111702847 + (TC)n Simple_repeat Simple_repeat 1 25 0 2513 117 94 3 chr11 39080706 39080894 -111702659 + MSTA LTR MaLR 184 428 0 1606 194 49 12 chr11 39080894 39081217 -111702336 + MER1B DNA MER1_type 1 337 0 371 271 68 53 chr11 39081299 39081506 -111702047 - L1ME3A LINE L1 -17 6153 5944 963 259 88 24 chr11 39081517 39082787 -111700766 - L1ME3A LINE L1 -405 5761 4384 234 214 36 0 chr11 39082889 39082945 -111700608 + GA-rich Low_complexity Low_complexity 2 59 0 499 348 73 28 chr11 39083691 39083891 -111699662 + MLT1K LTR MaLR 16 206 -382 1898 189 15 53 chr11 39083891 39084303 -111699250 - MSTD LTR MaLR 0 396 1 499 348 73 28 chr11 39084303 39084527 -111699026 + MLT1K LTR MaLR 206 459 -129 259 307 59 20 chr11 39084972 39085073 -111698480 + MIR SINE MIR 42 146 -62 296 200 0 14 chr11 39085845 39085915 -111697638 + MLT1L LTR MaLR 544 612 -3 2244 88 3 0 chr11 39086145 39086429 -111697124 + AluSq SINE Alu 1 285 -28 189 0 0 0 chr11 39086429 39086450 -111697103 + (CAAAC)n Simple_repeat Simple_repeat 2 22 0 720 93 27 67 chr11 39086526 39086676 -111696877 - MER53 DNA DNA -2 187 44 1845 106 0 0 chr11 39086844 39087081 -111696472 + AluSg/x SINE Alu 68 304 -8 2495 126 3 3 chr11 39087810 39088174 -111695379 - THE1B LTR MaLR 0 364 1 1825 153 121 16 chr11 39088463 39088842 -111694711 - MSTA LTR MaLR -2 426 8 225 0 0 0 chr11 39088844 39088869 -111694684 + (TC)n Simple_repeat Simple_repeat 2 26 0 * 297 0 0 0 chr11 39088868 39088901 -111694652 + (TG)n Simple_repeat Simple_repeat 2 34 0 182 286 24 0 chr11 39089963 39090005 -111693548 + L2 LINE L2 2653 2695 -619 314 322 147 76 chr11 39090245 39090599 -111692954 + L2 LINE L2 2804 3182 -90 207 114 0 0 chr11 39090656 39090691 -111692862 + (TGAA)n Simple_repeat Simple_repeat 3 37 0 182 359 11 22 chr11 39091353 39091445 -111692108 + MIR3 SINE MIR 105 195 -13 309 280 10 40 chr11 39091556 39091656 -111691897 + L2 LINE L2 3216 3312 -1 * 503 317 33 45 chr11 39091647 39091890 -111691663 - MIR SINE MIR -3 259 20 254 96 19 19 chr11 39092557 39092609 -111690944 + Charlie5 DNA MER1_type 2545 2596 -16 1094 156 235 21 chr11 39092609 39092847 -111690706 + AluSg1 SINE Alu 6 294 -15 430 263 57 29 chr11 39093169 39093344 -111690209 - MER117 DNA MER1_type -1 196 17 185 169 17 0 chr11 39093573 39093632 -111689921 + (TA)n Simple_repeat Simple_repeat 1 60 0 575 180 0 0 chr11 39093968 39094057 -111689496 - AluJ/FLAM SINE Alu -223 89 1 526 261 83 47 chr11 39095399 39095652 -111687901 - MIR SINE MIR 0 262 1 279 276 90 90 chr11 39095933 39096078 -111687475 - MIR SINE MIR -71 191 47 277 170 82 143 chr11 39099430 39099577 -111683976 - MLT1H LTR MaLR -2 547 410 343 213 38 0 chr11 39099669 39099749 -111683804 - MLT1H LTR MaLR -321 228 146 279 382 0 9 chr11 39099975 39100085 -111683468 + MER5A DNA MER1_type 73 181 -8 1827 171 10 7 chr11 39101531 39101829 -111681724 + AluJo SINE Alu 1 299 -13 234 309 85 43 chr11 39103794 39103888 -111679665 - MER91C DNA MER1_type -3 137 40 407 221 25 6 chr11 39104243 39104401 -111679152 + CT-rich Low_complexity Low_complexity 4 164 0 319 213 37 22 chr11 39104420 39104556 -111678997 + CT-rich Low_complexity Low_complexity 4 141 0 628 314 81 28 chr11 39104559 39104764 -111678789 - L2 LINE L2 -1 3312 3086 554 224 71 24 chr11 39104764 39104934 -111678619 - MER5B DNA MER1_type 0 178 1 628 314 81 28 chr11 39104934 39105011 -111678542 - L2 LINE L2 -227 3086 3015 667 248 6 6 chr11 39105069 39105226 -111678327 + MER63A DNA MER1_type 53 209 -1 189 225 0 0 chr11 39105231 39105271 -111678282 - L2 LINE L2 -345 2969 2930 2395 215 36 55 chr11 39106346 39106969 -111676584 - MLT1E2 LTR MaLR 0 626 1 2147 95 0 7 chr11 39107240 39107545 -111676008 - AluSq SINE Alu 0 303 1 455 272 52 0 chr11 39107571 39107707 -111675846 + L2 LINE L2 3156 3298 -15 276 286 20 61 chr11 39107706 39107804 -111675749 - L2 LINE L2 -9 3263 3170 * 1866 186 75 8 chr11 39107860 39108259 -111675294 + MSTA LTR MaLR 1 426 -2 1475 156 21 55 chr11 39108471 39108797 -111674756 + MER58B DNA MER1_type 27 341 0 22 0 0 0 chr11 39109670 39109692 -111673861 + AT_rich Low_complexity Low_complexity 1 22 0 367 288 8 34 chr11 39110827 39110945 -111672608 - MIR3 SINE MIR -12 196 82 784 294 22 0 chr11 39111016 39111244 -111672309 + MIR SINE MIR 11 243 -19 222 173 19 19 chr11 39111251 39111303 -111672250 + (CTA)n Simple_repeat Simple_repeat 1 52 0 342 322 44 0 chr11 39111918 39112101 -111671452 + L1ME3 LINE L1 5691 5881 -281 216 0 0 0 chr11 39113405 39113429 -111670124 + (TA)n Simple_repeat Simple_repeat 2 25 0 190 204 37 37 chr11 39113956 39114010 -111669543 - MIR SINE MIR -66 196 143 23 0 0 0 chr11 39114199 39114222 -111669331 + AT_rich Low_complexity Low_complexity 1 23 0 485 135 42 0 chr11 39114223 39114319 -111669234 - L1MA9 LINE L1 0 6312 6213 358 285 128 34 chr11 39114778 39114957 -111668596 + MIR SINE MIR 67 262 0 205 380 13 13 chr11 39114955 39115034 -111668519 + L2 LINE L2 3190 3268 -4 * 404 303 9 0 chr11 39116965 39117074 -111666479 + MIR3 SINE MIR 97 206 -2 385 393 31 47 chr11 39117428 39117543 -111666010 + L2 LINE L2 2880 2995 -277 180 0 0 0 chr11 39117543 39117563 -111665990 + (TA)n Simple_repeat Simple_repeat 2 21 0 288 53 0 0 chr11 39117563 39117601 -111665952 + (TTTAA)n Simple_repeat Simple_repeat 3 40 0 2343 86 0 0 chr11 39117601 39117891 -111665662 - AluY SINE Alu -21 290 1 385 393 31 47 chr11 39117891 39118094 -111665459 + L2 LINE L2 2992 3195 -77 225 250 40 26 chr11 39118198 39118274 -111665279 - MIR3 SINE MIR -43 165 89 308 202 107 12 chr11 39118957 39119041 -111664512 + MER94 DNA DNA 13 104 -30 526 227 0 21 chr11 39119153 39119294 -111664259 - MLT1E3 LTR MaLR -421 203 66 393 270 8 8 chr11 39119190 39119316 -111664237 - MLT2C1 LTR ERVL -250 147 22 * 1491 216 110 35 chr11 39119365 39119827 -111663726 - MLT1D LTR MaLR -8 497 1 315 280 54 11 chr11 39119841 39119934 -111663619 - L2 LINE L2 -19 3253 3157 985 226 6 0 chr11 39120121 39120302 -111663251 - MER5A DNA MER1_type -7 182 1 582 304 177 0 chr11 39120361 39120621 -111662932 + L2 LINE L2 3008 3313 0 188 135 21 219 chr11 39121450 39121546 -111662007 + L3b LINE CR1 1274 1350 -233 491 286 0 0 chr11 39121563 39121675 -111661878 - MER81 DNA DNA -2 112 1 207 339 31 0 chr11 39121685 39121750 -111661803 + L3 LINE CR1 1414 1480 -97 255 31 0 0 chr11 39122086 39122118 -111661435 + (TG)n Simple_repeat Simple_repeat 1 32 0 324 102 0 0 chr11 39122118 39122167 -111661386 + (GA)n Simple_repeat Simple_repeat 2 50 0 290 267 64 47 chr11 39122585 39122757 -111660796 + MLT1J LTR MaLR 7 181 -330 270 233 150 45 chr11 39122854 39122987 -111660566 + MLT1L LTR MaLR 465 611 -4 324 0 0 0 chr11 39123157 39123193 -111660360 + (TG)n Simple_repeat Simple_repeat 2 37 0 483 238 7 41 chr11 39124346 39124493 -111659060 + MER3 DNA MER1_type 68 209 0 30 0 0 0 chr11 39124648 39124678 -111658875 + AT_rich Low_complexity Low_complexity 1 30 0 383 320 59 23 chr11 39124772 39124788 -111658765 + MIR SINE MIR 19 33 -229 2733 59 50 0 chr11 39124788 39125146 -111658407 + L1PA7 LINE L1 5773 6148 -6 383 320 59 23 chr11 39125146 39125348 -111658205 + MIR SINE MIR 33 245 -17 210 174 0 0 chr11 39125353 39125399 -111658154 + (TG)n Simple_repeat Simple_repeat 1 46 0 193 398 108 25 chr11 39125740 39126054 -111657499 + L2 LINE L2 2814 3153 -119 502 224 7 41 chr11 39126298 39126445 -111657108 + MER3 DNA MER1_type 68 209 0 237 224 35 0 chr11 39128930 39128988 -111654565 + MIR SINE MIR 132 191 -71 521 97 39 0 chr11 39130879 39130982 -111652571 + (TCTA)n Simple_repeat Simple_repeat 2 108 0 183 394 0 0 chr11 39131514 39131585 -111651968 - L2 LINE L2 0 3272 3202 262 314 51 5 chr11 39131721 39131880 -111651673 + MIR SINE MIR 18 251 -11 243 228 128 100 chr11 39132971 39133151 -111650402 - MLT1J1 LTR MaLR -25 421 237 803 195 47 18 chr11 39133285 39133454 -111650099 - MLT1J1 LTR MaLR -270 176 3 192 40 0 0 chr11 39133720 39133745 -111649808 + (CA)n Simple_repeat Simple_repeat 1 25 0 336 327 45 36 chr11 39184370 39184593 -111598960 + MIR SINE MIR 24 248 -14 1657 144 107 4 chr11 39184873 39185136 -111598417 - AluSx SINE Alu -22 290 1 322 399 31 0 chr11 39185151 39185314 -111598239 - MIR SINE MIR -75 187 20 2156 110 0 4 chr11 39186317 39186640 -111596913 + AluSc SINE Alu 1 322 0 319 262 136 0 chr11 39186668 39186771 -111596782 + L2 LINE L2 3197 3313 0 220 321 211 0 chr11 39186820 39186929 -111596624 + MIR SINE MIR 20 151 -111 242 241 0 0 chr11 39186990 39187044 -111596509 + (TA)n Simple_repeat Simple_repeat 2 55 0 649 281 5 14 chr11 39188806 39189073 -111594480 - L1M1 LINE L1 -4572 2993 2829 276 155 70 0 chr11 39189069 39189140 -111594413 + L1MA8 LINE L1 6216 6291 0 * 412 271 0 30 chr11 39189194 39189360 -111594193 - L1MDa LINE L1 -4715 1825 1665 5721 180 39 0 chr11 39189487 39190466 -111593087 - L1PA7 LINE L1 -2 6152 5163 11446 130 9 16 chr11 39190468 39192319 -111591234 + Tigger1 DNA MER2_type 522 2360 -58 336 64 0 0 chr11 39192346 39192393 -111591160 + (TG)n Simple_repeat Simple_repeat 1 47 0 428 35 17 0 chr11 39192777 39192835 -111590718 + (CA)n Simple_repeat Simple_repeat 2 60 0 195 273 55 0 chr11 39193035 39193090 -111590463 - L2 LINE L2 -47 3225 3168 327 121 0 0 chr11 39193465 39193523 -111590030 + (TG)n Simple_repeat Simple_repeat 1 58 0 247 321 78 47 chr11 39194270 39194463 -111589090 + MIR SINE MIR 20 218 -44 23 33 0 0 chr11 39195034 39195064 -111588489 + AT_rich Low_complexity Low_complexity 1 30 0 791 301 46 0 chr11 39195514 39195796 -111587757 + L1ME3A LINE L1 5455 5749 -421 780 254 13 49 chr11 39195801 39196025 -111587528 + L1ME3A LINE L1 5941 6156 -14 391 278 148 18 chr11 39196019 39196242 -111587311 + HAL1 LINE L1 1549 1800 -707 * 21 0 0 0 chr11 39196497 39196518 -111587035 + AT_rich Low_complexity Low_complexity 1 21 0 380 269 46 81 chr11 39196819 39197102 -111586451 + HAL1 LINE L1 2228 2500 -7 1800 220 40 42 chr11 39197188 39197665 -111585888 - MLT1D LTR MaLR -7 498 23 2565 54 0 13 chr11 39198410 39198724 -111584829 + AluY SINE Alu 1 310 -1 274 270 99 9 chr11 39199567 39199678 -111583875 + MIR SINE MIR 75 195 -67 639 209 92 10 chr11 39201648 39201844 -111581709 - MER69 DNA AcHobo -8 2518 2307 1373 227 10 52 chr11 39201858 39202242 -111581311 + MLT1A2 LTR MaLR 1 368 -6 1894 214 177 15 chr11 39202448 39203040 -111580513 - MER69 DNA AcHobo -1754 772 85 773 227 67 4 chr11 39203040 39203309 -111580244 - L1M4 LINE L1 -3539 2607 2322 182 349 12 0 chr11 39203706 39203789 -111579764 + L2 LINE L2 2419 2502 -812 35 0 0 0 chr11 39204207 39204242 -111579311 + AT_rich Low_complexity Low_complexity 1 35 0 312 304 18 18 chr11 39204646 39204758 -111578795 - MIR3 SINE MIR -7 201 90 1754 223 39 25 chr11 39204838 39205358 -111578195 + L1MB7 LINE L1 4577 5103 -1043 1800 135 57 30 chr11 39205485 39205819 -111577734 - MER61A LTR ERV1 0 343 1 6983 97 12 8 chr11 39205819 39207192 -111576361 - MER61A-int LTR ERV1 0 5217 3796 760 183 19 29 chr11 39207192 39207425 -111576128 + L1MB7 LINE L1 5202 5432 -742 1772 225 65 11 chr11 39207427 39207952 -111575601 + L1MB7 LINE L1 5617 6169 -15 216 0 0 0 chr11 39207956 39207980 -111575573 + (TA)n Simple_repeat Simple_repeat 1 24 0 236 363 24 40 chr11 39207986 39208110 -111575443 - MIR SINE MIR -93 169 48 322 308 45 26 chr11 39208928 39209084 -111574469 + MIR SINE MIR 103 261 -1 750 189 54 38 chr11 39209116 39209301 -111574252 - MER3 DNA MER1_type 0 209 22 2601 107 6 3 chr11 39211488 39211851 -111571702 + THE1B LTR MaLR 1 364 0 232 289 54 7 chr11 39211985 39212108 -111571445 + (TATG)n Simple_repeat Simple_repeat 4 137 -22 204 40 0 0 chr11 39212108 39212133 -111571420 + (CA)n Simple_repeat Simple_repeat 1 25 0 232 289 54 7 chr11 39212133 39212158 -111571395 + (TATG)n Simple_repeat Simple_repeat 137 159 0 240 141 33 54 chr11 39212174 39212266 -111571287 + (TG)n Simple_repeat Simple_repeat 1 90 0 614 278 165 0 chr11 39212270 39212482 -111571071 + MIR SINE MIR 13 259 -3 208 324 0 0 chr11 39213289 39213357 -111570196 + L2 LINE L2 3159 3226 -87 223 226 0 19 chr11 39213967 39214020 -111569533 + L2 LINE L2 3262 3313 0 595 300 21 33 chr11 39214471 39214711 -111568842 - MIR SINE MIR -25 237 1 270 316 18 35 chr11 39217100 39217214 -111566339 + MIR SINE MIR 11 122 -140 1024 149 59 5 chr11 39217423 39217645 -111565908 - L1MA7 LINE L1 -7 6284 6051 575 190 0 156 chr11 39217645 39217882 -111565671 + L1MA7 LINE L1 5874 6073 -218 839 181 1 30 chr11 39217908 39218113 -111565440 - MLT1B LTR MaLR -6 384 173 1978 159 26 6 chr11 39218148 39218493 -111565060 - MLT1A1 LTR MaLR -13 352 1 394 319 48 34 chr11 39218943 39219150 -111564403 + MIR SINE MIR 47 256 -6 1032 239 22 70 chr11 39219306 39219661 -111563892 - MER46C DNA MER2_type 0 338 1 22 0 0 0 chr11 39219754 39219776 -111563777 + AT_rich Low_complexity Low_complexity 1 22 0 427 283 99 36 chr11 39220830 39221053 -111562500 - MER102a DNA MER1_type -13 317 81 304 122 82 0 chr11 39221055 39221104 -111562449 - MIR SINE MIR -87 175 123 281 301 0 38 chr11 39221160 39221293 -111562260 + MLT1H LTR MaLR 80 207 -342 232 344 41 33 chr11 39221488 39221610 -111561943 - MIR SINE MIR -121 141 19 1680 217 32 51 chr11 39222009 39222483 -111561070 - MLT1C LTR MaLR -2 465 1 2375 56 7 3 chr11 39223411 39223713 -111559840 - AluY SINE Alu -8 303 1 2372 66 23 3 chr11 39224098 39224403 -111559150 - AluY SINE Alu 0 311 1 374 257 55 0 chr11 39224618 39224727 -111558826 + MIR SINE MIR 34 148 -114 1058 222 50 60 chr11 39224728 39225165 -111558388 - MER69 DNA AcHobo -4 2522 2090 549 249 44 4 chr11 39225316 39225511 -111558042 - MLT1B LTR MaLR -11 373 165 329 161 0 0 chr11 39225515 39225571 -111557982 - MLT1B LTR MaLR -318 56 1 780 289 132 25 chr11 39226782 39227432 -111556121 - L2 LINE L2 0 3313 2592 879 323 104 34 chr11 39227621 39228521 -111555032 - L2 LINE L2 -2264 1050 88 408 281 54 18 chr11 39228700 39228867 -111554686 - MIR SINE MIR -76 186 14 364 306 186 0 chr11 39228932 39229056 -111554497 + L2 LINE L2 3121 3267 -5 229 197 0 49 chr11 39229078 39229139 -111554414 + T-rich Low_complexity Low_complexity 5 62 0 435 38 0 0 chr11 39229588 39229641 -111553912 + (TG)n Simple_repeat Simple_repeat 1 53 0 207 0 0 0 chr11 39229640 39229663 -111553890 + (GA)n Simple_repeat Simple_repeat 1 23 0 * 384 22 0 0 chr11 39230294 39230339 -111553214 + (TG)n Simple_repeat Simple_repeat 2 46 0 341 342 20 35 chr11 39230457 39230659 -111552894 - MIR SINE MIR -42 220 22 2234 103 0 3 chr11 39231396 39231697 -111551856 + AluSx SINE Alu 2 301 -11 180 111 0 0 chr11 39232133 39232160 -111551393 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 279 278 113 40 chr11 39232161 39232312 -111551241 - MIR SINE MIR -16 246 85 2401 91 45 6 chr11 39232312 39232665 -111550888 - THE1C LTR MaLR 0 375 9 372 259 70 21 chr11 39235086 39235229 -111548324 - MLT1J LTR MaLR -257 254 105 391 373 81 18 chr11 39236138 39236560 -111546993 - L2 LINE L2 -213 3059 2608 841 252 67 17 chr11 39237729 39237967 -111545586 + MIR SINE MIR 12 261 -1 299 240 40 0 chr11 39238824 39238899 -111544654 - ORSL DNA AcHobo -1 274 197 25 31 0 0 chr11 39239274 39239306 -111544247 + AT_rich Low_complexity Low_complexity 1 32 0 528 266 181 5 chr11 39239306 39239494 -111544059 - MIR SINE MIR -14 248 28 357 314 39 0 chr11 39240465 39240669 -111542884 + L1ME LINE L1 5597 5808 -313 1257 167 104 5 chr11 39240704 39240925 -111542628 + AluJb SINE Alu 1 243 -69 2151 114 9 0 chr11 39241781 39242131 -111541422 + L1MA3 LINE L1 5843 6195 -110 2452 214 82 112 chr11 39242218 39243313 -111540240 + L1M2 LINE L1 466 1527 -5962 1900 270 25 3 chr11 39243323 39243971 -111539582 + L1M2 LINE L1 2289 2950 -4546 6268 213 47 16 chr11 39243984 39245937 -111537616 + L1M2 LINE L1 3294 5309 -2256 4479 153 29 56 chr11 39245930 39247335 -111536218 + L1M2 LINE L1 5736 7096 -614 * 192 77 0 0 chr11 39247627 39247653 -111535900 + (TC)n Simple_repeat Simple_repeat 2 27 0 23 0 0 0 chr11 39248109 39248132 -111535421 + AT_rich Low_complexity Low_complexity 1 23 0 1318 177 71 41 chr11 39248557 39248851 -111534702 + AluJo SINE Alu 1 303 -9 497 348 31 13 chr11 39250966 39251193 -111532360 - MIR SINE MIR -24 238 8 239 318 47 0 chr11 39251312 39251397 -111532156 + MIR SINE MIR 53 141 -121 413 276 58 45 chr11 39251781 39251937 -111531616 - MIR SINE MIR 0 262 105 1459 12 0 0 chr11 39252519 39252685 -111530868 + L1PA2 LINE L1 5986 6151 -4 486 294 24 8 chr11 39253746 39253872 -111529681 + LTR16C LTR ERVL 152 279 -212 290 246 0 0 chr11 39254058 39254115 -111529438 + LTR16C LTR ERVL 286 342 -149 1612 147 163 10 chr11 39255656 39255963 -111527590 - MER47A DNA MER2_type 0 366 13 650 243 200 50 chr11 39255978 39256443 -111527110 - MLT1F1 LTR MaLR -8 559 25 486 218 61 14 chr11 39256954 39257101 -111526452 - MIR SINE MIR -6 256 103 591 261 37 41 chr11 39257131 39257524 -111526029 - L1ME LINE L1 -616 5554 5165 1160 265 61 28 chr11 39257972 39258649 -111524904 - L1ME LINE L1 -2199 3947 3238 27 29 0 0 chr11 39258673 39258707 -111524846 + AT_rich Low_complexity Low_complexity 1 34 0 228 342 13 13 chr11 39258732 39258890 -111524663 - L1ME LINE L1 -3060 3086 2929 321 300 153 12 chr11 39258975 39259145 -111524408 - L1ME3A LINE L1 -7 6163 5970 327 278 52 52 chr11 39259226 39259399 -111524154 - L1MC5 LINE L1 -453 7508 7336 1888 104 41 0 chr11 39259535 39259804 -111523749 - AluSc SINE Alu -5 304 25 1277 288 123 9 chr11 39261012 39261467 -111522086 + MLT1G1 LTR MaLR 82 588 -7 634 238 19 12 chr11 39261720 39261880 -111521673 + MIR SINE MIR 12 172 -90 2088 153 109 8 chr11 39262239 39262624 -111520929 - MSTA LTR MaLR -2 426 3 6737 183 25 10 chr11 39262626 39263859 -111519694 - MSTA-int LTR MaLR 0 1651 400 1088 83 0 21 chr11 39263862 39264007 -111519546 + AluY SINE Alu 1 142 -169 1441 112 9 13 chr11 39264108 39264332 -111519221 - AluY SINE Alu -88 223 1 2504 151 10 0 chr11 39264332 39264735 -111518818 - MSTA-int LTR MaLR -1244 407 1 1564 153 79 31 chr11 39264735 39265096 -111518457 - MSTA LTR MaLR 0 428 1 1592 130 35 32 chr11 39265285 39265570 -111517983 - THE1C LTR MaLR -89 286 1 10615 109 28 11 chr11 39265570 39267124 -111516429 - THE1C-int LTR MaLR 0 1580 1 2092 144 27 27 chr11 39267124 39267499 -111516054 - THE1C LTR MaLR 0 375 1 2062 134 7 0 chr11 39267570 39267869 -111515684 - AluSq SINE Alu -12 301 1 23 68 0 0 chr11 39267932 39267976 -111515577 + AT_rich Low_complexity Low_complexity 1 44 0 876 288 25 8 chr11 39268312 39268552 -111515001 - MIR SINE MIR -2 260 17 933 223 129 6 chr11 39269194 39269544 -111514009 - Charlie4a DNA MER1_type -89 419 27 488 329 13 0 chr11 39269737 39269889 -111513664 + MIR3 SINE MIR 52 205 -3 2645 190 19 25 chr11 39270535 39271062 -111512491 + L1MCa LINE L1 474 997 -5429 2138 106 11 44 chr11 39271063 39271430 -111512123 + L1MA5 LINE L1 5428 5782 -518 872 204 0 0 chr11 39271430 39271587 -111511966 + FRAM SINE Alu 1 153 -23 2373 133 104 8 chr11 39271588 39272061 -111511492 + L1MA5 LINE L1 5771 6288 -12 2951 148 63 3 chr11 39272070 39272657 -111510896 + L1MCa LINE L1 982 1603 -4823 1404 253 106 25 chr11 39272782 39273266 -111510287 + MLT1H LTR MaLR 1 606 -18 370 298 50 0 chr11 39273297 39273418 -111510135 + MIR SINE MIR 65 191 -71 845 242 32 52 chr11 39273605 39273853 -111509700 + MIR SINE MIR 10 252 -10 191 35 0 35 chr11 39273857 39273886 -111509667 + (TTA)n Simple_repeat Simple_repeat 1 28 0 213 136 0 23 chr11 39274201 39274245 -111509308 + (CAAAAA)n Simple_repeat Simple_repeat 5 47 0 512 293 69 5 chr11 39274453 39274641 -111508912 + MIR SINE MIR 51 250 -12 351 309 68 21 chr11 39276111 39276302 -111507251 + MIR SINE MIR 63 262 0 2151 98 44 0 chr11 39277085 39277380 -111506173 + AluSc SINE Alu 1 308 -1 351 282 0 12 chr11 39277881 39277966 -111505587 - MIR SINE MIR -149 113 30 344 293 210 6 chr11 39278949 39279106 -111504447 + MIR SINE MIR 1 189 -73 258 286 0 32 chr11 39280169 39280232 -111503321 + L2 LINE L2 3197 3257 -15 271 248 50 40 chr11 39280395 39280496 -111503057 + MIR SINE MIR 161 262 0 707 299 66 69 chr11 39282339 39282405 -111501148 - MER115 DNA AcHobo 0 693 628 1955 129 14 0 chr11 39282405 39282708 -111500845 - AluSx SINE Alu 0 307 1 707 299 66 69 chr11 39282708 39283187 -111500366 - MER115 DNA AcHobo -65 628 120 534 304 84 30 chr11 39283655 39283892 -111499661 + MIR SINE MIR 12 261 -1 1812 184 3 0 chr11 39284052 39284357 -111499196 + AluSx SINE Alu 1 306 -6 279 54 0 0 chr11 39284610 39284647 -111498906 + (TG)n Simple_repeat Simple_repeat 1 37 0 2318 100 0 3 chr11 39285658 39285969 -111497584 - AluSp SINE Alu -3 310 1 21 0 0 0 chr11 39286064 39286085 -111497468 + AT_rich Low_complexity Low_complexity 1 21 0 894 184 60 55 chr11 39287137 39287355 -111496198 + MER20 DNA MER1_type 1 219 0 337 272 76 0 chr11 39287360 39287452 -111496101 - L3 LINE CR1 -270 1307 1209 28 48 0 0 chr11 39287455 39287497 -111496056 + AT_rich Low_complexity Low_complexity 1 42 0 2526 0 0 0 chr11 39287945 39288215 -111495338 + AluYa5 SINE Alu 39 308 -3 222 288 15 15 chr11 39289261 39289327 -111494226 + MIR3 SINE MIR 10 75 -133 320 286 116 27 chr11 39289959 39290071 -111493482 + MIR3 SINE MIR 48 169 -39 3597 159 31 3 chr11 39290636 39291254 -111492299 + MER41B LTR ERV1 1 635 0 647 203 8 0 chr11 39291879 39292012 -111491541 - L1MA9 LINE L1 -40 6272 6139 962 174 71 75 chr11 39292016 39292269 -111491284 - LTR8A LTR ERV1 0 727 476 2533 137 19 36 chr11 39292431 39292897 -111490656 - LTR8A LTR ERV1 -269 458 1 516 273 50 27 chr11 39292897 39293117 -111490436 - L1MA9 LINE L1 -174 6138 5914 2631 170 37 9 chr11 39293163 39293714 -111489839 - L1MA9 LINE L1 -523 5789 5224 684 217 0 0 chr11 39293739 39293859 -111489694 - FLAM_A SINE Alu -11 122 3 218 250 14 14 chr11 39294233 39294305 -111489248 + (TA)n Simple_repeat Simple_repeat 2 73 0 188 194 0 0 chr11 39294911 39294947 -111488606 - L2 LINE L2 -49 3223 3188 269 196 0 0 chr11 39295504 39295555 -111487998 - L1ME3A LINE L1 -9 6161 6111 1658 271 64 35 chr11 39295604 39296654 -111486899 - L1MEc LINE L1 -2827 3388 2309 370 321 72 17 chr11 39296695 39296932 -111486621 - L1MEc LINE L1 -4122 2274 2025 316 281 44 44 chr11 39297034 39297148 -111486405 - L3 LINE CR1 -674 903 790 2595 128 0 3 chr11 39297206 39297582 -111485971 + THE1C LTR MaLR 1 375 0 24 67 0 0 chr11 39297898 39297943 -111485610 + AT_rich Low_complexity Low_complexity 1 45 0 386 317 55 31 chr11 39298054 39298347 -111485206 - MLT1H LTR MaLR -16 533 196 261 296 49 12 chr11 39299207 39299369 -111484184 + L1ME4a LINE L1 5940 6107 -14 314 349 58 81 chr11 39299634 39299929 -111483624 + L2 LINE L2 2967 3254 -18 592 309 48 0 chr11 39300087 39300275 -111483278 - L2 LINE L2 0 3313 3117 882 155 0 0 chr11 39300281 39300423 -111483130 - L1MB1 LINE L1 -467 5701 5560 * 2234 167 29 37 chr11 39300421 39300876 -111482677 + L1MB1 LINE L1 5696 6146 -22 235 313 76 15 chr11 39300896 39301027 -111482526 - L2 LINE L2 -195 3118 2980 875 211 118 7 chr11 39301045 39301343 -111482210 - MER33 DNA MER1_type 0 324 1 2446 55 10 3 chr11 39301644 39301953 -111481600 - AluY SINE Alu 0 311 1 21 82 0 0 chr11 39301988 39302037 -111481516 + AT_rich Low_complexity Low_complexity 1 49 0 24236 29 3 1 chr11 39302037 39305767 -111477786 - L1PA3 LINE L1 -3 6152 2423 970 291 132 12 chr11 39306371 39306773 -111476780 - LTR16A LTR ERVL 0 450 1 21 71 0 0 chr11 39306806 39306848 -111476705 + AT_rich Low_complexity Low_complexity 1 42 0 379 321 62 0 chr11 39307337 39307530 -111476023 - L1ME LINE L1 -369 5752 5548 265 241 0 74 chr11 39307851 39307959 -111475594 - LTR67 LTR ERVL 0 557 458 1969 214 37 18 chr11 39307997 39308455 -111475098 + MLT1C LTR MaLR 1 467 0 371 217 9 0 chr11 39308939 39309045 -111474508 + GA-rich Low_complexity Low_complexity 3 109 0 750 281 50 23 chr11 39309079 39309300 -111474253 - MIR SINE MIR -15 247 21 191 235 20 20 chr11 39309717 39309768 -111473785 + MIR SINE MIR 96 146 -62 1078 176 19 23 chr11 39310108 39310324 -111473229 - MER20 DNA MER1_type -4 215 1 3281 131 4 57 chr11 39310547 39311191 -111472362 + MER4B LTR ERV1 1 779 0 217 336 277 0 chr11 39311559 39311696 -111471857 - MIR3 SINE MIR -6 202 28 1663 162 10 40 chr11 39311863 39312166 -111471387 - AluJo SINE Alu -10 302 9 230 311 22 22 chr11 39312629 39312719 -111470834 - L3 LINE CR1 -217 1360 1271 343 344 22 22 chr11 39312882 39313109 -111470444 + HERV16 LTR ERVL 4667 4893 -103 445 277 166 20 chr11 39313666 39313919 -111469634 + L2 LINE L2 3011 3300 -13 513 248 115 25 chr11 39313964 39314121 -111469432 - MLT1G1 LTR MaLR -8 582 412 12180 94 36 1 chr11 39314151 39316709 -111466844 - L1PA7 LINE L1 0 6154 3531 4506 103 4 0 chr11 39316709 39317387 -111466166 + L1PA7 LINE L1 2837 3517 -2629 1054 277 28 56 chr11 39317392 39317782 -111465771 - MLT1G1 LTR MaLR -207 388 10 1721 164 18 24 chr11 39317785 39318120 -111465433 + THE1C LTR MaLR 28 360 -15 1974 120 0 0 chr11 39318502 39318769 -111464784 - AluSc SINE Alu -4 305 39 21 0 0 0 chr11 39321862 39321883 -111461670 + AT_rich Low_complexity Low_complexity 1 21 0 1013 278 68 20 chr11 39321974 39322327 -111461226 + MLT1H LTR MaLR 7 376 -173 189 0 0 0 chr11 39322366 39322387 -111461166 + (CAGC)n Simple_repeat Simple_repeat 2 22 0 331 255 31 20 chr11 39322931 39323029 -111460524 + MIR SINE MIR 104 202 -60 1434 144 33 6 chr11 39323533 39323963 -111459590 - LTR54 LTR ERV1 0 510 6 270 329 189 21 chr11 39324090 39324233 -111459320 - L3 LINE CR1 -99 1478 1312 552 204 7 49 chr11 39324499 39324641 -111458912 + Charlie8 DNA MER1_type 87 222 -2195 259 323 31 10 chr11 39324779 39324875 -111458678 + MER5B DNA MER1_type 4 101 -77 357 213 299 24 chr11 39325826 39325953 -111457600 - MIR SINE MIR -1 261 100 201 362 92 31 chr11 39326261 39326424 -111457129 + MER5A DNA MER1_type 14 186 -3 381 292 0 18 chr11 39326514 39326627 -111456926 + L2 LINE L2 3169 3279 -34 296 271 76 59 chr11 39326908 39327026 -111456527 - L2 LINE L2 -215 3057 2938 258 239 33 65 chr11 39327252 39327344 -111456209 + MIR SINE MIR 118 206 -56 364 385 50 5 chr11 39328255 39328476 -111455077 + MIR SINE MIR 32 262 0 183 162 0 0 chr11 39328480 39328517 -111455036 + (TTA)n Simple_repeat Simple_repeat 3 39 0 420 291 17 0 chr11 39328695 39328812 -111454741 - MIR3 SINE MIR -36 172 54 776 297 80 45 chr11 39328824 39329225 -111454328 + LTR16A LTR ERVL 14 428 -22 447 202 64 0 chr11 39329228 39329322 -111454231 - FRAM SINE Alu -76 100 1 281 294 62 31 chr11 39330269 39330429 -111453124 - MLT1J LTR MaLR -344 167 3 25 0 0 0 chr11 39330431 39330456 -111453097 + AT_rich Low_complexity Low_complexity 1 25 0 310 322 49 0 chr11 39330456 39330599 -111452954 - L1ME3A LINE L1 -224 5946 5797 395 286 143 39 chr11 39330702 39330961 -111452592 - L1ME3A LINE L1 -2144 5664 5379 26 82 0 0 chr11 39331001 39331062 -111452491 + AT_rich Low_complexity Low_complexity 1 61 0 511 273 172 55 chr11 39331072 39332173 -111451380 - L1ME3A LINE L1 -846 5300 4071 4016 145 25 27 chr11 39333433 39334143 -111449410 + MER50 LTR ERV1 2 710 -24 333 308 60 0 chr11 39335716 39335849 -111447704 - MIR SINE MIR -56 206 66 2045 146 57 40 chr11 39336112 39336536 -111447017 + MSTB1 LTR MaLR 2 432 0 204 97 0 0 chr11 39337454 39337485 -111446068 + (TA)n Simple_repeat Simple_repeat 1 31 0 618 328 45 4 chr11 39338069 39338316 -111445237 + MIR SINE MIR 6 262 0 240 208 83 28 chr11 39338723 39338795 -111444758 - L2 LINE L2 -9 3304 3229 437 308 132 60 chr11 39338867 39339231 -111444322 - L3 LINE CR1 -94 1483 1094 24 100 0 0 chr11 39339890 39339970 -111443583 + AT_rich Low_complexity Low_complexity 1 80 0 1897 263 94 21 chr11 39339971 39340330 -111443223 + L1MCc LINE L1 1 333 -6089 2134 138 30 25 chr11 39340330 39340692 -111442861 + THE1B LTR MaLR 1 364 0 1897 263 94 21 chr11 39340692 39341048 -111442505 + L1MCc LINE L1 333 1116 -5306 4184 181 27 17 chr11 39341152 39342048 -111441505 - L1PA15 LINE L1 -1072 5074 4170 5532 132 15 38 chr11 39342050 39343181 -111440372 + L1PA15 LINE L1 5070 6164 -1 222 264 56 0 chr11 39343585 39343657 -111439896 + (CATATA)n Simple_repeat Simple_repeat 1 76 0 239 226 0 21 chr11 39343668 39343761 -111439792 + (CATA)n Simple_repeat Simple_repeat 2 92 0 1170 225 98 21 chr11 39343933 39344705 -111438848 + L1MCc LINE L1 2081 3009 -3932 512 310 60 0 chr11 39345016 39345200 -111438353 + MIR SINE MIR 66 260 -2 422 341 123 3 chr11 39346270 39346604 -111436949 + L1ME4a LINE L1 5724 6097 -24 252 309 118 26 chr11 39346639 39346791 -111436762 - L2 LINE L2 -1 3271 3106 1895 275 240 40 chr11 39346916 39348531 -111435022 - L2 LINE L2 -25 3288 1330 2065 210 29 12 chr11 39348531 39348945 -111434608 + MSTB LTR MaLR 1 421 -5 822 264 161 11 chr11 39348970 39349231 -111434322 - L2 LINE L2 -2008 1306 1007 21 57 0 0 chr11 39349673 39349708 -111433845 + AT_rich Low_complexity Low_complexity 1 35 0 1648 271 27 16 chr11 39350259 39350701 -111432852 - ERVL LTR ERVL -3887 1877 1431 2122 222 15 29 chr11 39350817 39351562 -111431991 + ERVL LTR ERVL 3392 4183 -1581 314 160 27 67 chr11 39351502 39351577 -111431976 - ERVL LTR ERVL -1581 4183 4112 * 1113 210 65 52 chr11 39351745 39352035 -111431518 + ERVL LTR ERVL 4163 4456 -1308 948 181 122 0 chr11 39352511 39352699 -111430854 + MER2 DNA MER2_type 1 211 -134 32 26 0 0 chr11 39352704 39352743 -111430810 + AT_rich Low_complexity Low_complexity 1 39 0 180 0 0 0 chr11 39352746 39352766 -111430787 + (CATTT)n Simple_repeat Simple_repeat 3 22 0 182 36 0 36 chr11 39352812 39352840 -111430713 + (TATAA)n Simple_repeat Simple_repeat 5 31 0 457 287 24 48 chr11 39353134 39353301 -111430252 - MIR SINE MIR -4 258 96 479 265 29 0 chr11 39353944 39354080 -111429473 + MER103 DNA DNA 8 147 -19 506 310 32 21 chr11 39354591 39354778 -111428775 + MIR3 SINE MIR 19 207 -1 387 206 116 53 chr11 39356595 39356784 -111426769 + L1ME4a LINE L1 5711 5911 -210 448 253 20 53 chr11 39357021 39357171 -111426382 - MER45A DNA AcHobo -19 159 15 212 392 36 10 chr11 39357265 39357459 -111426094 - L3 LINE CR1 -638 939 741 1152 240 0 11 chr11 39357809 39358080 -111425473 - AluJo SINE Alu -17 295 28 189 279 0 0 chr11 39358337 39358380 -111425173 - MIR3 SINE MIR -49 159 117 689 238 36 18 chr11 39358382 39358550 -111425003 - MER58 DNA MER1_type -170 171 1 251 245 123 38 chr11 39358845 39358951 -111424602 - L1ME4a LINE L1 -22 6099 5985 193 179 71 54 chr11 39360512 39360568 -111422985 - L2 LINE L2 -3 3269 3213 1063 205 5 15 chr11 39360719 39360924 -111422629 + MER3 DNA MER1_type 1 203 -6 2877 145 68 10 chr11 39361809 39362306 -111421247 - MER1A DNA MER1_type 0 527 2 381 219 66 101 chr11 39362401 39362629 -111420924 + MER106A DNA MER1_type 10 229 -7 227 344 175 13 chr11 39363698 39363852 -111419701 - MIR SINE MIR -41 221 43 257 232 84 32 chr11 39363938 39364033 -111419520 - MLT1H LTR MaLR -16 533 434 1639 126 88 32 chr11 39364611 39364896 -111418657 - AluSx SINE Alu -11 301 1 234 230 86 30 chr11 39365485 39365640 -111417913 + L1MC/D LINE L1 5707 5877 -244 22 56 0 0 chr11 39365653 39365689 -111417864 + AT_rich Low_complexity Low_complexity 1 36 0 1226 310 72 24 chr11 39365698 39366525 -111417028 - L2 LINE L2 -54 3259 2384 198 282 59 47 chr11 39367186 39367271 -111416282 + MIR SINE MIR 65 150 -58 521 333 39 22 chr11 39368345 39368735 -111414818 + LTR16A LTR ERVL 24 450 0 581 292 46 40 chr11 39368735 39369060 -111414493 + L1ME3A LINE L1 5589 5915 -255 189 291 18 0 chr11 39370074 39370129 -111413424 - L2 LINE L2 0 3313 3258 25 0 0 0 chr11 39370151 39370176 -111413377 + AT_rich Low_complexity Low_complexity 1 25 0 325 333 43 26 chr11 39374273 39374390 -111409163 + L2 LINE L2 3154 3272 0 290 324 137 33 chr11 39374541 39374723 -111408830 + MIR SINE MIR 49 249 -13 2008 151 0 0 chr11 39374724 39375016 -111408537 - AluSx SINE Alu -18 294 3 399 140 19 28 chr11 39375195 39375302 -111408251 + (TA)n Simple_repeat Simple_repeat 1 106 0 21 0 0 0 chr11 39375463 39375484 -111408069 + AT_rich Low_complexity Low_complexity 1 21 0 1004 211 48 0 chr11 39376090 39376299 -111407254 - MER20 DNA MER1_type 0 219 1 496 284 130 6 chr11 39376314 39376483 -111407070 - MIR SINE MIR -2 260 71 1078 222 52 3 chr11 39376805 39377082 -111406471 + L1MD3 LINE L1 6149 6321 -23 201 328 17 42 chr11 39377126 39377245 -111406308 + MIR SINE MIR 32 147 -61 1956 149 42 20 chr11 39378834 39379190 -111404363 + THE1B LTR MaLR 1 364 0 3997 160 42 24 chr11 39379683 39380440 -111403113 + Tigger2 DNA MER2_type 1 771 -1947 1199 117 165 22 chr11 39380467 39380697 -111402856 + Tigger2 DNA MER2_type 2456 2718 0 231 289 92 0 chr11 39381637 39381713 -111401840 - MER63 DNA MER1_type -1 1060 978 42 57 0 0 chr11 39381854 39381924 -111401629 + AT_rich Low_complexity Low_complexity 1 70 0 24 0 0 0 chr11 39382374 39382398 -111401155 + AT_rich Low_complexity Low_complexity 1 24 0 1959 219 43 18 chr11 39382540 39383033 -111400520 - MLT1D LTR MaLR 0 505 1 832 278 95 32 chr11 39383185 39383555 -111399998 + MER110 LTR ERV1 2 394 -97 21 0 0 0 chr11 39383564 39383585 -111399968 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr11 39383887 39383913 -111399640 + AT_rich Low_complexity Low_complexity 1 26 0 660 158 0 38 chr11 39383948 39384131 -111399422 + CT-rich Low_complexity Low_complexity 3 178 0 300 286 122 24 chr11 39385004 39385291 -111398262 - L1ME4a LINE L1 -191 6348 6034 1640 247 30 8 chr11 39385565 39386067 -111397486 - L1ME4a LINE L1 -3362 3202 2690 1445 127 25 4 chr11 39386081 39386317 -111397236 - L1MB5 LINE L1 -1 6173 5933 3349 244 49 23 chr11 39386318 39387969 -111395584 - L1MCb LINE L1 -4863 1182 1 1255 320 40 32 chr11 39388061 39388685 -111394868 + L2 LINE L2 1261 1889 -1425 274 355 19 19 chr11 39389430 39389537 -111394016 + MIR SINE MIR 35 141 -67 413 251 118 37 chr11 39390995 39391182 -111392371 + MIR SINE MIR 61 262 0 204 264 152 32 chr11 39391307 39391414 -111392139 + MIR SINE MIR 35 152 -62 379 247 45 39 chr11 39391471 39391625 -111391928 - MER103 DNA DNA -2 164 10 442 277 15 82 chr11 39392756 39392951 -111390602 + MIR SINE MIR 49 230 -32 263 278 42 89 chr11 39393023 39393214 -111390339 + L2 LINE L2 2625 2806 -508 222 105 0 0 chr11 39393464 39393502 -111390051 + (TC)n Simple_repeat Simple_repeat 2 39 0 180 0 0 0 chr11 39393502 39393522 -111390031 + (CA)n Simple_repeat Simple_repeat 1 20 0 * 258 32 0 0 chr11 39393521 39393552 -111390001 + (GA)n Simple_repeat Simple_repeat 2 32 0 186 279 123 57 chr11 39395032 39395154 -111388399 + MIR SINE MIR 20 149 -113 523 305 21 42 chr11 39395267 39395457 -111388096 + LTR16A1 LTR ERVL 269 454 -3 232 213 0 66 chr11 39395960 39396021 -111387532 + MIR SINE MIR 206 262 0 270 0 0 0 chr11 39397205 39397235 -111386318 + (CA)n Simple_repeat Simple_repeat 2 31 0 448 156 52 12 chr11 39397284 39397457 -111386096 + (TA)n Simple_repeat Simple_repeat 1 180 0 396 173 56 25 chr11 39397487 39397649 -111385904 + (TATAA)n Simple_repeat Simple_repeat 4 170 0 248 161 35 35 chr11 39397779 39397866 -111385687 + (TATAA)n Simple_repeat Simple_repeat 5 91 0 256 62 124 8 chr11 39397877 39398006 -111385547 + (TA)n Simple_repeat Simple_repeat 1 144 0 202 333 60 26 chr11 39398212 39398329 -111385224 - L2 LINE L2 -22 3291 3171 2300 246 32 20 chr11 39398406 39399055 -111384498 + L1MB7 LINE L1 5474 6130 -54 357 289 39 0 chr11 39399070 39399174 -111384379 - MLT1G1 LTR MaLR -61 534 427 238 305 191 43 chr11 39399235 39399376 -111384177 - MLT1G1 LTR MaLR -298 257 96 2077 171 13 0 chr11 39399377 39399756 -111383797 + L1MB1 LINE L1 5778 6161 -7 187 314 20 69 chr11 39399809 39399911 -111383642 - L2 LINE L2 -42 3271 3175 270 0 0 0 chr11 39400100 39400130 -111383423 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 918 156 78 22 chr11 39400130 39400309 -111383244 - AluSg/x SINE Alu -28 282 94 319 36 455 0 chr11 39400833 39400888 -111382665 - MADE1 DNA Mariner 0 80 1 221 362 11 21 chr11 39401914 39402008 -111381545 - L2 LINE L2 -29 3284 3192 1364 273 68 47 chr11 39403500 39404013 -111379540 + MLT1E LTR MaLR 70 593 0 24 32 0 0 chr11 39404982 39405013 -111378540 + AT_rich Low_complexity Low_complexity 1 31 0 730 308 53 4 chr11 39405033 39405280 -111378273 + MIR SINE MIR 2 260 -2 198 71 0 0 chr11 39408133 39408161 -111375392 + (TC)n Simple_repeat Simple_repeat 1 28 0 550 269 48 44 chr11 39408955 39409182 -111374371 + L2 LINE L2 2808 3035 -278 345 336 67 0 chr11 39409224 39409343 -111374210 + L2 LINE L2 3169 3295 -18 32 57 0 0 chr11 39410565 39410618 -111372935 + AT_rich Low_complexity Low_complexity 1 53 0 1589 209 3 7 chr11 39410743 39411039 -111372514 - AluJb SINE Alu -17 295 1 849 249 150 19 chr11 39411132 39411618 -111371935 + MER114 LTR ERV 39 588 -60 1097 289 92 57 chr11 39412071 39412646 -111370907 - MLT1G1 LTR MaLR 0 595 1 1932 128 90 29 chr11 39413733 39414076 -111369477 + THE1B LTR MaLR 1 364 0 10836 111 23 0 chr11 39414076 39415620 -111367933 + THE1B-int LTR MaLR 1 1580 0 1884 142 74 42 chr11 39415620 39415973 -111367580 + THE1B LTR MaLR 1 364 0 523 329 65 10 chr11 39416620 39417021 -111366532 + L1ME4a LINE L1 5512 5934 -187 335 22 0 22 chr11 39417033 39417078 -111366475 + (CA)n Simple_repeat Simple_repeat 2 45 0 12841 237 29 23 chr11 39417649 39420017 -111363536 + L1PA16 LINE L1 2181 4532 -3072 7506 38 12 0 chr11 39420017 39420903 -111362650 + MER11D LTR ERVK 1 897 0 12841 237 29 23 chr11 39420903 39422130 -111361423 + L1PA16 LINE L1 4532 5750 -1854 1836 150 55 17 chr11 39422130 39422491 -111361062 - THE1C LTR MaLR 0 375 1 12841 237 29 23 chr11 39422491 39424347 -111359206 + L1PA16 LINE L1 5750 7604 0 1904 295 35 25 chr11 39424626 39425490 -111358063 - L1MEc LINE L1 -5475 921 50 290 169 96 60 chr11 39427148 39427231 -111356322 - L2 LINE L2 -69 3244 3159 268 191 0 0 chr11 39427238 39427285 -111356268 + AluJo SINE Alu 1 47 -253 1994 132 72 26 chr11 39427285 39427633 -111355920 - THE1B LTR MaLR 0 364 1 11342 101 16 0 chr11 39427633 39429188 -111354365 - THE1B-int LTR MaLR 0 1580 1 1971 149 55 23 chr11 39429191 39429539 -111354014 - THE1B LTR MaLR -3 361 3 1530 174 4 26 chr11 39429540 39429805 -111353748 + AluJo SINE Alu 42 300 -12 185 339 85 79 chr11 39430020 39430209 -111353344 - L2 LINE L2 -411 2903 2714 2380 157 38 0 chr11 39430223 39430643 -111352910 - L1MB3 LINE L1 0 6183 5748 747 109 0 9 chr11 39430643 39430753 -111352800 - AluSg/x SINE Alu -38 274 166 7339 40 1 1 chr11 39430753 39432371 -111351182 + L1PA4 LINE L1 4535 6153 -2 588 187 0 8 chr11 39432372 39432495 -111351058 + L1M3 LINE L1 5652 5773 -410 1103 126 0 0 chr11 39432496 39432647 -111350906 + AluSq/x SINE Alu 1 151 -162 764 314 167 16 chr11 39432662 39433236 -111350317 - L2 LINE L2 -609 2705 2045 1477 302 70 4 chr11 39433499 39434013 -111349540 + MLT1H LTR MaLR 2 549 0 279 389 36 6 chr11 39434188 39434355 -111349198 + MIR3 SINE MIR 30 201 -7 350 271 128 33 chr11 39436218 39436491 -111347062 + L1ME4a LINE L1 5816 6114 -7 429 295 67 58 chr11 39437132 39437356 -111346197 + MIR SINE MIR 2 227 -35 29 28 0 0 chr11 39437614 39437650 -111345903 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr11 39438600 39438621 -111344932 + AT_rich Low_complexity Low_complexity 1 21 0 29 28 0 0 chr11 39439614 39439650 -111343903 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr11 39439777 39439798 -111343755 + AT_rich Low_complexity Low_complexity 1 21 0 328 319 66 16 chr11 39440407 39440589 -111342964 - MIR SINE MIR -6 256 66 760 234 33 5 chr11 39440830 39441014 -111342539 + MER5A DNA MER1_type 1 189 0 191 287 0 81 chr11 39441817 39441904 -111341649 - L2 LINE L2 -9 3304 3225 572 229 0 0 chr11 39441904 39442013 -111341540 + FLAM_A SINE Alu 1 109 -33 24 32 0 0 chr11 39442020 39442051 -111341502 + AT_rich Low_complexity Low_complexity 1 31 0 260 306 14 0 chr11 39442252 39442324 -111341229 - L2 LINE L2 -254 3018 2946 2354 191 12 5 chr11 39443226 39443649 -111339904 - MSTB LTR MaLR 0 426 1 25 51 0 0 chr11 39443849 39443888 -111339665 + AT_rich Low_complexity Low_complexity 1 39 0 587 241 0 36 chr11 39444142 39444279 -111339274 + FLAM_A SINE Alu 1 132 -1 22 35 0 0 chr11 39446161 39446190 -111337363 + AT_rich Low_complexity Low_complexity 1 29 0 871 285 102 39 chr11 39446194 39446654 -111336899 + LTR16C LTR ERVL 3 491 0 238 342 89 37 chr11 39446681 39446871 -111336682 - MIR SINE MIR -13 249 50 1893 161 0 37 chr11 39447080 39447402 -111336151 + AluJo SINE Alu 1 310 -2 349 230 6 6 chr11 39447519 39447693 -111335860 + (TG)n Simple_repeat Simple_repeat 1 174 0 310 326 65 7 chr11 39448405 39448543 -111335010 + MIR SINE MIR 102 247 -15 181 344 61 31 chr11 39449059 39449222 -111334331 + L2 LINE L2 2613 2780 -534 23 0 0 0 chr11 39449592 39449615 -111333938 + AT_rich Low_complexity Low_complexity 1 23 0 1879 182 38 9 chr11 39449702 39450048 -111333505 - MLT1A1 LTR MaLR -2 363 8 1025 215 26 4 chr11 39450049 39450282 -111333271 - MLT1A1-int LTR MaLR -13 1722 1485 471 274 123 12 chr11 39450283 39450478 -111333075 + LTR1 LTR ERV1 28 235 -568 501 220 75 31 chr11 39450507 39450647 -111332906 + LTR28 LTR ERV1 324 423 -11 319 209 39 101 chr11 39450729 39450858 -111332695 + LTR28 LTR ERV1 900 1020 0 4205 238 94 36 chr11 39450864 39452188 -111331365 - MLT1A1-int LTR MaLR -211 1440 11 1532 215 13 48 chr11 39452200 39452576 -111330977 - MLT1A1 LTR MaLR -2 363 1 209 216 108 54 chr11 39452800 39452874 -111330679 - L2 LINE L2 -8 3305 3228 180 125 0 0 chr11 39453710 39453742 -111329811 + (TTTTG)n Simple_repeat Simple_repeat 3 34 0 589 219 49 55 chr11 39453943 39453972 -111329581 - MER20 DNA MER1_type -56 163 135 3028 150 19 21 chr11 39453972 39454538 -111329015 - MER34B LTR ERV1 0 565 1 589 219 49 55 chr11 39454538 39454672 -111328881 - MER20 DNA MER1_type -84 135 1 1483 170 18 98 chr11 39454777 39455113 -111328440 + AluJo SINE Alu 1 309 -3 3695 166 9 0 chr11 39455126 39455775 -111327778 - MER72 LTR ERV1 -67 655 1 234 0 0 0 chr11 39456192 39456218 -111327335 + (CA)n Simple_repeat Simple_repeat 1 26 0 1700 139 75 42 chr11 39456721 39457081 -111326472 + THE1C LTR MaLR 1 372 -3 196 333 113 27 chr11 39457471 39457621 -111325932 - MIR3 SINE MIR -9 199 37 1451 196 108 23 chr11 39457745 39458351 -111325202 + MER39 LTR ERV1 1 707 0 699 165 8 15 chr11 39459461 39459594 -111323959 - FLAM_C SINE Alu -1 132 1 234 267 17 17 chr11 39460215 39460275 -111323278 + MLT1I LTR MaLR 206 265 -144 1344 177 28 28 chr11 39460368 39460651 -111322902 + MER49 LTR ERV1 1 283 -640 1332 174 34 133 chr11 39460655 39460961 -111322592 + MER4E LTR ERV1 72 328 -451 862 156 0 15 chr11 39460961 39461096 -111322457 + FLAM_C SINE Alu 1 133 0 1332 174 34 133 chr11 39461096 39461204 -111322349 + MER4E LTR ERV1 328 445 -334 950 202 0 0 chr11 39461210 39461378 -111322175 - AluJb SINE Alu -13 299 132 1117 121 68 5 chr11 39461495 39461702 -111321851 + MER4D LTR ERV1 684 903 0 371 241 135 7 chr11 39462856 39462997 -111320556 + MER50 LTR ERV1 10 168 -566 4923 49 0 0 chr11 39463124 39463715 -111319838 - LTR10C LTR ERV1 0 591 1 979 183 18 49 chr11 39463860 39464084 -111319469 + MER50 LTR ERV1 518 734 0 2142 168 17 26 chr11 39464144 39464561 -111318992 + MER61B LTR ERV1 13 425 0 233 313 12 0 chr11 39464861 39464941 -111318612 - MER110A LTR ERV1 0 468 388 201 219 12 24 chr11 39464996 39465078 -111318475 + A-rich Low_complexity Low_complexity 4 84 0 379 230 60 20 chr11 39465778 39465878 -111317675 + L1MC4 LINE L1 6614 6717 -1325 248 108 0 0 chr11 39466056 39466093 -111317460 + Alu SINE Alu 250 286 -16 21 0 0 0 chr11 39466093 39466114 -111317439 + AT_rich Low_complexity Low_complexity 1 21 0 867 183 0 0 chr11 39466114 39466251 -111317302 - FRAM SINE Alu -39 137 1 303 28 0 0 chr11 39466523 39466559 -111316994 + (CA)n Simple_repeat Simple_repeat 1 36 0 1191 195 105 78 chr11 39466667 39467190 -111316363 - MER67C LTR ERV1 -5 509 15 1646 158 24 24 chr11 39467513 39467787 -111315766 + MER2 DNA MER2_type 11 287 -58 2308 110 0 0 chr11 39467787 39468087 -111315466 + AluSq SINE Alu 1 300 -13 1646 158 24 24 chr11 39468087 39468142 -111315411 + MER2 DNA MER2_type 286 340 -5 304 341 85 6 chr11 39468286 39468462 -111315091 - MIR SINE MIR -26 236 47 343 286 155 56 chr11 39468481 39468785 -111314768 + LTR52 LTR ERVL 18 351 -70 284 346 39 28 chr11 39469441 39469623 -111313930 + MLT1K LTR MaLR 142 325 -263 376 241 0 54 chr11 39469711 39469823 -111313730 + MLT1K LTR MaLR 467 572 -16 1573 211 10 3 chr11 39469833 39470132 -111313421 + AluJo SINE Alu 1 301 -11 295 317 32 0 chr11 39470186 39470309 -111313244 + MER94 DNA DNA 5 131 -3 531 124 8 16 chr11 39470475 39470604 -111312949 + (TCTA)n Simple_repeat Simple_repeat 3 130 0 692 315 55 52 chr11 39470843 39471338 -111312215 + MLT1L LTR MaLR 120 615 0 359 182 0 23 chr11 39471519 39471607 -111311946 + CT-rich Low_complexity Low_complexity 6 91 0 315 350 96 19 chr11 39471954 39472111 -111311442 + MIR3 SINE MIR 40 208 0 1985 166 119 29 chr11 39472169 39472615 -111310938 + MLT1D LTR MaLR 1 486 -19 2168 206 35 62 chr11 39472615 39472944 -111310609 - MLT2B3 LTR ERVL 0 554 245 495 0 0 0 chr11 39472944 39472999 -111310554 + (GA)n Simple_repeat Simple_repeat 2 56 0 2168 206 35 62 chr11 39472999 39473238 -111310315 - MLT2B3 LTR ERVL -309 245 1 240 279 0 13 chr11 39474102 39474181 -111309372 - MER116 DNA Mariner -1 79 2 319 227 68 23 chr11 39474629 39474717 -111308836 + MIR SINE MIR 116 207 -55 1624 168 94 41 chr11 39476723 39477117 -111306436 - MSTB1 LTR MaLR 0 432 18 6379 224 67 11 chr11 39477131 39478695 -111304858 - MSTB1-int LTR MaLR 0 1651 1 2013 183 69 2 chr11 39478695 39479100 -111304453 - MSTB1 LTR MaLR 0 432 1 2336 106 3 0 chr11 39479447 39479759 -111303794 - AluSp SINE Alu 0 313 1 1398 243 96 30 chr11 39481549 39482048 -111301505 - MLT1H LTR MaLR 0 549 18 243 0 0 0 chr11 39482051 39482078 -111301475 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 189 0 0 0 chr11 39482955 39482976 -111300577 + (T)n Simple_repeat Simple_repeat 1 21 0 24 67 0 0 chr11 39483210 39483255 -111300298 + AT_rich Low_complexity Low_complexity 1 45 0 2423 190 30 13 chr11 39483425 39483963 -111299590 - MER34C LTR ERV1 -2 583 37 343 307 214 0 chr11 39484011 39484088 -111299465 + MIR SINE MIR 22 81 -181 2303 90 7 0 chr11 39484088 39484389 -111299164 - AluY SINE Alu -3 308 6 343 307 214 0 chr11 39484389 39484503 -111299050 + MIR SINE MIR 81 254 -8 2253 77 40 0 chr11 39484768 39485067 -111298486 + AluY SINE Alu 1 311 0 277 315 22 0 chr11 39485458 39485550 -111298003 + MIR3 SINE MIR 110 203 -5 923 224 76 16 chr11 39486348 39486598 -111296955 - MER44D DNA MER2_type 0 605 469 5088 128 14 21 chr11 39486609 39487530 -111296023 - L1MA3 LINE L1 -102 7622 6708 * 28278 122 8 63 chr11 39487517 39494027 -111289526 - L1PA7 LINE L1 -1 6153 12 11841 174 27 25 chr11 39494037 39494189 -111289364 - L1MA3 LINE L1 -860 6705 6555 216 0 0 0 chr11 39494189 39494213 -111289340 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 11841 174 27 25 chr11 39494213 39498776 -111284777 - L1MA3 LINE L1 -1010 6555 1980 2499 122 6 0 chr11 39498778 39499140 -111284413 - THE1B LTR MaLR 0 364 1 9235 112 62 37 chr11 39499140 39499318 -111284235 - THE1B-int LTR MaLR 0 1580 1408 2345 105 0 3 chr11 39499318 39499624 -111283929 + AluY SINE Alu 1 305 -6 9235 112 62 37 chr11 39499624 39500986 -111282567 - THE1B-int LTR MaLR -172 1408 1 2293 120 14 0 chr11 39500986 39501337 -111282216 - THE1B LTR MaLR 0 364 9 10295 178 8 20 chr11 39501356 39503262 -111280291 - L1MA3 LINE L1 -5611 1954 72 2322 159 26 35 chr11 39503274 39503726 -111279827 - MER44D DNA MER2_type -250 455 8 26 101 0 0 chr11 39504259 39504348 -111279205 + AT_rich Low_complexity Low_complexity 1 89 0 23 78 0 0 chr11 39504493 39504544 -111279009 + AT_rich Low_complexity Low_complexity 1 51 0 21 36 0 0 chr11 39504570 39504598 -111278955 + AT_rich Low_complexity Low_complexity 1 28 0 1280 94 19 0 chr11 39504819 39504978 -111278575 - AluSc SINE Alu -147 162 1 8973 180 60 13 chr11 39506268 39507945 -111275608 - MER52A LTR ERV1 0 1755 1 288 282 10 153 chr11 39508013 39508131 -111275422 - MIR SINE MIR 0 262 183 1437 164 119 8 chr11 39508131 39508399 -111275154 + AluJb SINE Alu 5 302 -10 288 282 10 153 chr11 39508399 39508482 -111275071 - MIR SINE MIR -79 183 90 217 227 0 0 chr11 39508581 39508625 -111274928 + (TGAA)n Simple_repeat Simple_repeat 1 44 0 892 279 163 25 chr11 39510364 39510805 -111272748 - MLT1L LTR MaLR -2 613 112 536 230 149 0 chr11 39512108 39512258 -111271295 - MER5A DNA MER1_type -10 179 4 409 134 103 41 chr11 39512638 39512735 -111270818 - MER53 DNA DNA -6 183 81 228 98 0 24 chr11 39513279 39513320 -111270233 - LTR48 LTR ERV1 -51 736 697 24 77 0 0 chr11 39514149 39514201 -111269352 + AT_rich Low_complexity Low_complexity 1 52 0 679 223 87 50 chr11 39514520 39514577 -111268976 - MER39 LTR ERV1 -77 630 577 2419 133 46 12 chr11 39514577 39514991 -111268562 + MSTA LTR MaLR 1 428 0 679 223 87 50 chr11 39514991 39515223 -111268330 - MER39 LTR ERV1 -130 577 157 542 252 71 8 chr11 39515765 39515892 -111267661 - MER5B DNA MER1_type -40 138 4 2071 174 92 15 chr11 39515895 39516500 -111267053 - LTR8A LTR ERV1 0 727 5 427 242 23 31 chr11 39516522 39516650 -111266903 + MIR SINE MIR 87 213 -49 4024 168 26 11 chr11 39516657 39517373 -111266180 - MER50 LTR ERV1 -7 727 1 620 279 27 0 chr11 39517437 39517584 -111265969 - MIR SINE MIR 0 262 112 682 69 0 0 chr11 39517615 39517702 -111265851 - AluY SINE Alu -10 301 215 31 26 0 0 chr11 39517823 39517861 -111265692 + AT_rich Low_complexity Low_complexity 1 38 0 1295 200 26 56 chr11 39518649 39518954 -111264599 - AluJo SINE Alu -5 297 2 365 275 210 7 chr11 39519028 39519337 -111264216 + Tigger8 DNA MER2_type 206 577 -89 302 253 258 13 chr11 39519905 39520130 -111263423 - HAL1b LINE L1 -7 1341 1062 1643 272 29 26 chr11 39520187 39520837 -111262716 - HAL1b LINE L1 -400 948 297 691 208 50 19 chr11 39520864 39521023 -111262530 - FRAM SINE Alu -17 159 1 415 245 112 47 chr11 39521172 39521405 -111262148 + L2 LINE L2 2958 3205 -108 2245 113 0 10 chr11 39524201 39524510 -111259043 - AluSx SINE Alu -6 306 1 2038 148 7 0 chr11 39524510 39524813 -111258740 - AluJb SINE Alu -5 307 3 947 125 36 42 chr11 39524855 39525023 -111258530 - AluSg/x SINE Alu -20 292 126 239 246 0 0 chr11 39525029 39525090 -111258463 - AluJ/monomer SINE Alu -7 295 235 772 178 0 15 chr11 39525217 39525352 -111258201 - FLAM_C SINE Alu 0 133 1 350 294 18 18 chr11 39525813 39525922 -111257631 + CT-rich Low_complexity Low_complexity 6 114 0 477 195 34 8 chr11 39526313 39526431 -111257122 + MER53 DNA DNA 3 123 -66 219 333 0 0 chr11 39526500 39526572 -111256981 + (TA)n Simple_repeat Simple_repeat 1 72 0 282 175 0 0 chr11 39526572 39526629 -111256924 + MER53 DNA DNA 129 185 -4 42218 37 25 1 chr11 39527320 39533325 -111250228 - L1PA2 LINE L1 -2 6153 1 1522 246 35 3 chr11 39533337 39533675 -111249878 + MLT2D LTR ERVL 18 366 -48 303 49 0 0 chr11 39533678 39533719 -111249834 + (TC)n Simple_repeat Simple_repeat 2 42 0 428 49 0 0 chr11 39533749 39533814 -111249739 + MLT2C2 LTR ERVL 416 464 0 387 0 0 0 chr11 39533845 39533888 -111249665 + (TA)n Simple_repeat Simple_repeat 1 43 0 1850 167 36 27 chr11 39533988 39534318 -111249235 - MER1B DNA MER1_type 0 339 7 193 253 0 96 chr11 39534680 39534763 -111248790 + MER5A DNA MER1_type 29 103 -86 197 424 8 0 chr11 39534913 39535045 -111248508 - L2 LINE L2 -492 2822 2690 21 36 0 0 chr11 39535156 39535184 -111248369 + AT_rich Low_complexity Low_complexity 1 28 0 1112 199 43 8 chr11 39535372 39535628 -111247925 - MER31A LTR ERV1 0 485 221 323 300 127 0 chr11 39537849 39537959 -111245594 - L2 LINE L2 0 3272 3149 482 209 82 37 chr11 39538108 39538242 -111245311 - MER3 DNA MER1_type -68 141 2 446 255 60 72 chr11 39539052 39539303 -111244250 + L1ME LINE L1 539 786 -5284 1092 246 73 24 chr11 39539310 39539710 -111243843 + L1ME2 LINE L1 5743 6333 -1 2074 60 56 3 chr11 39539815 39540100 -111243453 - AluY SINE Alu -11 300 1 418 362 69 11 chr11 39540229 39540417 -111243136 - MIR SINE MIR -48 214 16 198 0 0 0 chr11 39540503 39540525 -111243028 + (TA)n Simple_repeat Simple_repeat 2 23 0 24 0 0 0 chr11 39540845 39540869 -111242684 + AT_rich Low_complexity Low_complexity 1 24 0 211 296 104 17 chr11 39541378 39541493 -111242060 + MIR SINE MIR 81 205 -57 432 258 21 0 chr11 39542104 39542201 -111241352 - MER45A DNA AcHobo -1 177 79 284 281 223 14 chr11 39542610 39542749 -111240804 + MIR3 SINE MIR 27 194 -14 315 206 14 14 chr11 39543291 39543364 -111240189 - MLT1I LTR MaLR -14 395 323 243 362 9 0 chr11 39543550 39543655 -111239898 - MLT1I LTR MaLR -256 153 48 204 363 70 56 chr11 39544576 39544791 -111238762 - L2 LINE L2 -5 3267 3050 289 367 109 34 chr11 39544875 39545496 -111238057 - L2 LINE L2 -337 2977 2310 33 56 0 0 chr11 39545627 39545681 -111237872 + AT_rich Low_complexity Low_complexity 1 54 0 460 302 62 22 chr11 39546452 39546631 -111236922 - MLT1H LTR MaLR 0 549 364 27 0 0 0 chr11 39546886 39546913 -111236640 + AT_rich Low_complexity Low_complexity 1 27 0 239 316 191 7 chr11 39548853 39548989 -111234564 - MIR SINE MIR 0 262 102 180 0 0 0 chr11 39549003 39549023 -111234530 + (TTTTTG)n Simple_repeat Simple_repeat 4 23 0 217 299 73 66 chr11 39549117 39549254 -111234299 + L3 LINE CR1 1416 1553 -24 23 0 0 0 chr11 39549890 39549913 -111233640 + AT_rich Low_complexity Low_complexity 1 23 0 2231 99 0 13 chr11 39549964 39550299 -111233254 - AluSg SINE Alu 0 310 1 25 0 0 0 chr11 39550418 39550443 -111233110 + AT_rich Low_complexity Low_complexity 1 25 0 259 235 19 148 chr11 39550509 39550671 -111232882 - L2 LINE L2 -73 3240 3100 701 294 18 18 chr11 39550675 39550903 -111232650 - L2 LINE L2 -823 2491 2264 971 333 15 3 chr11 39550927 39551266 -111232287 - LTR16C LTR ERVL -18 473 131 190 256 49 12 chr11 39551803 39551885 -111231668 - L2 LINE L2 -1604 1710 1626 187 292 94 23 chr11 39552044 39552215 -111231338 - L2 LINE L2 -2 3311 3129 22 0 0 0 chr11 39552533 39552555 -111230998 + AT_rich Low_complexity Low_complexity 1 22 0 255 31 0 0 chr11 39553025 39553057 -111230496 + (TG)n Simple_repeat Simple_repeat 2 33 0 1771 202 34 11 chr11 39553257 39553608 -111229945 - MLT1A1 LTR MaLR 0 365 7 1853 285 49 11 chr11 39553747 39554529 -111229024 - L1M4 LINE L1 -2020 4126 3316 31 104 0 0 chr11 39555003 39555118 -111228435 + AT_rich Low_complexity Low_complexity 1 115 0 221 286 63 0 chr11 39555218 39555281 -111228272 + L2 LINE L2 3205 3271 -1 2101 135 59 9 chr11 39556550 39556890 -111226663 - THE1B LTR MaLR -7 357 1 705 329 45 30 chr11 39556999 39557333 -111226220 - LTR16A LTR ERVL 0 450 112 1517 190 72 0 chr11 39557535 39557840 -111225713 - L1PB4 LINE L1 0 6156 5830 * 2978 227 6 26 chr11 39557831 39558571 -111224982 + L1 LINE L1 4644 5367 -788 645 241 91 20 chr11 39559048 39559247 -111224306 + MLT1E LTR MaLR 9 221 -372 316 294 0 0 chr11 39559278 39559346 -111224207 - MER2 DNA MER2_type -277 68 1 1244 212 53 7 chr11 39559354 39559656 -111223897 - L1MCa LINE L1 -1880 4546 4231 2409 121 17 40 chr11 39559729 39560134 -111223419 + MER75 DNA T2_type 119 514 0 5406 261 30 15 chr11 39560137 39561948 -111221605 - L1MCa LINE L1 -2196 4230 2392 3728 241 20 25 chr11 39561952 39562324 -111221229 + MER21B LTR ERV1 5 377 -486 2047 154 16 19 chr11 39562324 39562700 -111220853 + THE1C LTR MaLR 1 375 0 3728 241 20 25 chr11 39562700 39563160 -111220393 + MER21B LTR ERV1 377 833 -30 1549 157 75 0 chr11 39563188 39563506 -111220047 - L1MCa LINE L1 -4030 2396 2055 1159 213 126 68 chr11 39563509 39563586 -111219967 + MER4C LTR ERV1 1 72 -393 330 26 0 0 chr11 39563586 39563625 -111219928 + (CA)n Simple_repeat Simple_repeat 1 39 0 1159 213 126 68 chr11 39563625 39564130 -111219423 + MER4C LTR ERV1 72 457 -8 220 209 0 0 chr11 39564144 39564187 -111219366 + (CATA)n Simple_repeat Simple_repeat 4 46 0 8130 186 105 9 chr11 39564190 39564829 -111218724 - L1MCa LINE L1 -4366 2060 1483 603 74 0 0 chr11 39564829 39564910 -111218643 + (TTCC)n Simple_repeat Simple_repeat 2 82 0 8130 186 105 9 chr11 39564910 39564932 -111218621 - L1MCa LINE L1 -4943 1483 1465 552 113 0 0 chr11 39564932 39565012 -111218541 + MADE1 DNA Mariner 1 80 0 8130 186 105 9 chr11 39565012 39566204 -111217349 - L1MCa LINE L1 -4961 1465 29 581 343 58 36 chr11 39566206 39566539 -111217014 - HAL1 LINE L1 -2079 428 82 1972 110 3 7 chr11 39566539 39566854 -111216699 + AluSx SINE Alu 1 314 0 581 343 58 36 chr11 39566854 39566930 -111216623 - HAL1 LINE L1 -2425 82 9 212 260 40 0 chr11 39566958 39567008 -111216545 - L3b LINE CR1 -255 1328 1277 2338 70 3 3 chr11 39568325 39568625 -111214928 - AluY SINE Alu -11 300 1 624 332 78 56 chr11 39569394 39569974 -111213579 - L2 LINE L2 0 3313 2717 344 241 12 176 chr11 39569980 39570304 -111213249 - L2 LINE L2 -5 3308 3038 470 338 73 0 chr11 39571348 39571499 -111212054 + MER91A DNA MER1_type 35 196 0 615 318 76 8 chr11 39571525 39571761 -111211792 - MIR SINE MIR -4 258 7 223 255 0 0 chr11 39572873 39572924 -111210629 - L2 LINE L2 0 3313 3263 1732 292 44 81 chr11 39573256 39574578 -111208975 + L2 LINE L2 2024 3290 -23 13782 138 33 14 chr11 39574579 39575082 -111208471 - Tigger1 DNA MER2_type 0 2418 1926 2038 128 3 17 chr11 39575082 39575378 -111208175 - AluSx SINE Alu -20 292 1 13782 138 33 14 chr11 39575378 39577247 -111206306 - Tigger1 DNA MER2_type -492 1926 1 210 118 0 0 chr11 39577255 39577289 -111206264 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 322 384 59 8 chr11 39577360 39577615 -111205938 - L2 LINE L2 -715 2599 2332 1332 177 105 0 chr11 39580109 39580452 -111203101 - L1MB1 LINE L1 -60 6108 5705 729 212 36 0 chr11 39580452 39580617 -111202936 - MER39 LTR ERV1 0 707 537 3231 114 37 2 chr11 39580622 39581113 -111202440 - L1PA11 LINE L1 -1 6173 5666 243 242 43 97 chr11 39581213 39581473 -111202080 - MER39 LTR ERV1 -203 504 219 * 274 222 101 71 chr11 39581447 39581546 -111202007 - LTR48B LTR ERV1 -539 105 4 2232 189 12 27 chr11 39581549 39582031 -111201522 - L1MB1 LINE L1 -460 5708 5238 2355 84 68 11 chr11 39582031 39582386 -111201167 + THE1C LTR MaLR 1 375 0 2232 189 12 27 chr11 39582386 39582481 -111201072 - L1MB1 LINE L1 -930 5238 5143 718 237 41 8 chr11 39582482 39582668 -111200885 + MLT1A1 LTR MaLR 202 365 0 2623 210 50 10 chr11 39582668 39583345 -111200208 - L1MB1 LINE L1 -1581 4565 3862 233 191 21 0 chr11 39583346 39583390 -111200163 - MLT2B1 LTR ERVL 0 515 471 1530 134 40 0 chr11 39583390 39583637 -111199916 - Tigger2 DNA MER2_type 0 2718 2462 4056 172 12 21 chr11 39583687 39584449 -111199104 - Tigger2 DNA MER2_type -1961 757 3 229 286 0 0 chr11 39584488 39584537 -111199016 + Tigger3(Golem) DNA MER2_type 1 49 -2980 231 234 0 21 chr11 39584660 39584707 -111198846 + Tigger3(Golem) DNA MER2_type 2983 3028 -1 535 246 0 0 chr11 39584735 39584849 -111198704 - MLT2B1 LTR ERVL -71 444 331 * 731 145 0 30 chr11 39584847 39584978 -111198575 + Tigger2 DNA MER2_type 253 379 -2339 1698 168 26 41 chr11 39584980 39585246 -111198307 - MLT2B1 LTR ERVL -183 337 76 2031 130 7 10 chr11 39585246 39585539 -111198014 - AluSx SINE Alu -20 292 1 1698 168 26 41 chr11 39585539 39585612 -111197941 - MLT2B1 LTR ERVL -444 76 3 2103 244 75 8 chr11 39585612 39586362 -111197191 - L1MB1 LINE L1 -2279 3867 3068 4126 77 8 65 chr11 39587071 39588162 -111195391 - MER11A LTR ERVK 0 1266 3 2136 190 41 24 chr11 39588165 39588629 -111194924 + LTR38 LTR ERV1 66 537 -19 1843 170 7 0 chr11 39589131 39589425 -111194128 - AluJb SINE Alu -16 296 1 1881 135 120 0 chr11 39589461 39589786 -111193767 - THE1B LTR MaLR 0 364 1 10942 116 11 0 chr11 39589789 39590872 -111192681 - THE1B-int LTR MaLR -3 1577 469 853 62 0 0 chr11 39590872 39590984 -111192569 - L1PA5 LINE L1 0 6154 6043 10942 116 11 0 chr11 39590984 39591459 -111192094 - THE1B-int LTR MaLR -1111 469 1 1622 159 132 15 chr11 39591459 39591785 -111191768 - THE1B LTR MaLR 0 364 1 1453 251 25 59 chr11 39591820 39592294 -111191259 + MLT1C LTR MaLR 1 458 -9 192 125 0 0 chr11 39593059 39593091 -111190462 + (CA)n Simple_repeat Simple_repeat 2 33 0 246 179 18 0 chr11 39593628 39593684 -111189869 + (TTTA)n Simple_repeat Simple_repeat 1 57 0 21 0 0 0 chr11 39593913 39593934 -111189619 + AT_rich Low_complexity Low_complexity 1 21 0 206 287 20 10 chr11 39594120 39594221 -111189332 + (CATATA)n Simple_repeat Simple_repeat 1 102 0 * 247 188 31 16 chr11 39594175 39594239 -111189314 + (TATATG)n Simple_repeat Simple_repeat 5 69 0 476 221 50 0 chr11 39594250 39594390 -111189163 - L1MB1 LINE L1 -3160 2986 2840 1304 254 25 78 chr11 39594392 39594825 -111188728 + MER77 LTR ERV1 186 595 -10 2252 284 52 42 chr11 39594932 39595754 -111187799 - L1MDa LINE L1 -5542 998 24 822 289 80 34 chr11 39595773 39595974 -111187579 - L1MEc LINE L1 -4331 2065 1875 1348 221 26 13 chr11 39595974 39596014 -111187539 - AluJb SINE Alu 0 312 274 414 0 0 0 chr11 39596014 39596060 -111187493 + (TC)n Simple_repeat Simple_repeat 2 47 0 1348 221 26 13 chr11 39596060 39596327 -111187226 - AluJb SINE Alu -38 274 1 822 289 80 34 chr11 39596327 39597313 -111186240 - L1MEc LINE L1 -4521 1875 783 5206 168 27 67 chr11 39597400 39598102 -111185451 - L1PA15 LINE L1 0 6165 5437 1997 138 3 0 chr11 39598102 39598385 -111185168 - AluSx SINE Alu -25 287 4 5206 168 27 67 chr11 39598385 39599787 -111183766 - L1PA15 LINE L1 -728 5437 4156 535 341 69 26 chr11 39599976 39600398 -111183155 - L1MEc LINE L1 -5918 478 39 897 174 90 0 chr11 39602502 39602657 -111180896 - AluJb SINE Alu -14 298 130 1142 272 80 31 chr11 39603400 39604120 -111179433 - L1ME3A LINE L1 -223 6016 5262 1318 298 53 24 chr11 39604485 39605335 -111178218 - L1ME3A LINE L1 -1305 4910 4036 358 304 114 5 chr11 39605397 39605598 -111177955 - L1ME3A LINE L1 -4101 2295 2073 2748 16 0 0 chr11 39605608 39605925 -111177628 - L1PA3 LINE L1 0 6155 5839 686 330 83 18 chr11 39606392 39606789 -111176764 - L2 LINE L2 -692 2622 2200 5007 142 65 61 chr11 39607330 39608464 -111175089 - Tigger3b DNA MER2_type -6 1225 1 511 328 127 4 chr11 39610279 39610508 -111173045 - MIR SINE MIR -4 258 2 3238 338 99 11 chr11 39610903 39612432 -111171121 + L2 LINE L2 30 1693 -1621 473 206 11 11 chr11 39612446 39612621 -111170932 + (TA)n Simple_repeat Simple_repeat 2 176 0 399 41 0 0 chr11 39612624 39612673 -111170880 + (CA)n Simple_repeat Simple_repeat 2 50 0 1156 316 28 30 chr11 39612678 39613325 -111170228 + L2 LINE L2 2662 3309 -4 386 338 43 30 chr11 39614488 39614790 -111168763 + MLT1I LTR MaLR 98 403 -6 236 281 30 52 chr11 39614815 39614950 -111168603 - L2 LINE L2 -243 3029 2898 248 331 118 7 chr11 39615177 39615313 -111168240 - L2 LINE L2 -610 2704 2554 857 277 42 0 chr11 39615790 39616003 -111167550 - MLT1A1 LTR MaLR 0 365 144 257 0 30 0 chr11 39616007 39616040 -111167513 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 4691 100 12 0 chr11 39616043 39616720 -111166833 - L1PA14 LINE L1 -9 6152 5468 851 205 0 0 chr11 39616720 39616876 -111166677 - MLT1A1 LTR MaLR -209 156 1 180 0 0 0 chr11 39620237 39620257 -111163296 + (CA)n Simple_repeat Simple_repeat 1 20 0 187 342 26 26 chr11 39620812 39620888 -111162665 - MIR3 SINE MIR -52 156 81 2618 100 11 5 chr11 39621754 39622125 -111161428 + THE1C LTR MaLR 1 373 -2 26 50 0 0 chr11 39623413 39623453 -111160100 + AT_rich Low_complexity Low_complexity 1 40 0 1715 221 11 3 chr11 39623860 39624222 -111159331 - MLT1A1 LTR MaLR 0 365 1 672 291 61 4 chr11 39625189 39625436 -111158117 - MIR SINE MIR 0 262 2 253 282 145 17 chr11 39625757 39625874 -111157679 - LTR33 LTR ERVL -153 368 237 625 259 24 24 chr11 39625900 39626066 -111157487 - LTR33 LTR ERVL -348 173 8 27 73 0 0 chr11 39626749 39626804 -111156749 + AT_rich Low_complexity Low_complexity 1 55 0 310 242 0 130 chr11 39627611 39627772 -111155781 - MIR SINE MIR -37 225 86 2329 52 0 55 chr11 39628371 39628681 -111154872 - AluY SINE Alu -18 293 1 345 189 25 15 chr11 39628707 39628815 -111154738 - MLT1I LTR MaLR -3 406 314 340 259 0 83 chr11 39628844 39628952 -111154601 - MLT1I LTR MaLR -310 99 1 311 216 136 0 chr11 39628952 39629040 -111154513 + MIR SINE MIR 142 241 -21 2159 149 15 0 chr11 39630663 39631005 -111152548 - MER7A DNA MER2_type 0 346 2 2309 128 6 6 chr11 39631166 39631511 -111152042 + THE1B LTR MaLR 3 347 -17 411 258 177 30 chr11 39631563 39631761 -111151792 + MIR SINE MIR 34 260 -2 485 275 25 0 chr11 39631781 39631901 -111151652 - MIR SINE MIR -65 197 75 253 318 139 29 chr11 39632085 39632258 -111151295 + MIR SINE MIR 65 256 -6 21 0 0 0 chr11 39632570 39632591 -111150962 + AT_rich Low_complexity Low_complexity 1 21 0 291 285 73 24 chr11 39632939 39633062 -111150491 - MIR SINE MIR -67 195 67 2664 107 31 13 chr11 39633633 39634018 -111149535 + MLT2A2 LTR ERVL 1 392 -61 198 0 0 0 chr11 39634019 39634041 -111149512 + (TC)n Simple_repeat Simple_repeat 2 23 0 253 90 33 90 chr11 39634041 39634163 -111149390 + (TA)n Simple_repeat Simple_repeat 1 115 0 309 333 0 0 chr11 39634164 39634254 -111149299 - L1MC4 LINE L1 -1339 6703 6614 * 328 258 0 43 chr11 39634188 39634281 -111149272 + L1MC4 LINE L1 6614 6702 -1340 301 333 0 0 chr11 39634280 39634370 -111149183 - L1MC4 LINE L1 -1339 6703 6614 * 297 197 0 0 chr11 39634377 39634438 -111149115 + (TA)n Simple_repeat Simple_repeat 1 61 0 238 210 16 0 chr11 39634441 39634503 -111149050 + L1MCa LINE L1 2006 2068 -4358 267 152 0 0 chr11 39634503 39634549 -111149004 + (TA)n Simple_repeat Simple_repeat 1 46 0 227 264 0 22 chr11 39634553 39634644 -111148909 + L1MC4 LINE L1 6615 6703 -1339 330 272 0 22 chr11 39634674 39634766 -111148787 + L1MC4 LINE L1 6614 6703 -1339 319 315 0 0 chr11 39634775 39634864 -111148689 + L1MC4 LINE L1 6615 6703 -1339 237 178 0 0 chr11 39634864 39634909 -111148644 + (TATATG)n Simple_repeat Simple_repeat 1 45 0 321 315 0 0 chr11 39634909 39634998 -111148555 + L1MC4 LINE L1 6615 6703 -1339 220 211 0 0 chr11 39634998 39635036 -111148517 + (TATATG)n Simple_repeat Simple_repeat 2 39 0 312 282 47 0 chr11 39635036 39635121 -111148432 + L1MC4 LINE L1 6614 6702 -1340 241 275 0 29 chr11 39635122 39635262 -111148291 - L1MC4 LINE L1 -1339 6703 6614 227 140 0 40 chr11 39635248 39635298 -111148255 + L1MC4 LINE L1 6652 6699 -1343 * 535 236 7 25 chr11 39635301 39635573 -111147980 + (TATATG)n Simple_repeat Simple_repeat 1 267 0 244 244 0 51 chr11 39635597 39635675 -111147878 + L1MC4 LINE L1 6652 6725 -1317 7210 81 9 26 chr11 39635675 39636692 -111146861 + HERVL LTR ERVL 748 1747 -3907 3850 76 6 0 chr11 39636693 39637192 -111146361 + HERVL LTR ERVL 3038 3539 -2115 616 221 9 0 chr11 39637934 39638047 -111145506 + FLAM_A SINE Alu 2 115 -18 32 26 0 0 chr11 39638105 39638144 -111145409 + AT_rich Low_complexity Low_complexity 1 39 0 272 290 0 0 chr11 39638360 39638422 -111145131 + MIR SINE MIR 82 143 -65 359 177 34 17 chr11 39638439 39638614 -111144939 + (TA)n Simple_repeat Simple_repeat 1 178 0 297 215 21 0 chr11 39638650 39638794 -111144759 + (TA)n Simple_repeat Simple_repeat 1 147 0 196 302 35 12 chr11 39638799 39638885 -111144668 + MIR SINE MIR 162 249 -13 371 298 12 68 chr11 39639682 39639843 -111143710 - MER117 DNA MER1_type 0 197 46 471 280 23 34 chr11 39640468 39640643 -111142910 - MER69A DNA AcHobo -4 173 1 12131 129 13 53 chr11 39642621 39645492 -111138061 + L1PA7 LINE L1 9 2877 -3584 17087 104 4 8 chr11 39645492 39648565 -111134988 + L1PA7 LINE L1 3142 6221 -248 2177 122 7 0 chr11 39648565 39648869 -111134684 - AluSp SINE Alu -7 306 1 17087 104 4 8 chr11 39648869 39649116 -111134437 + L1PA7 LINE L1 6221 6467 -2 2002 155 0 0 chr11 39649334 39649625 -111133928 - AluSx SINE Alu -21 291 1 6103 221 47 20 chr11 39649996 39652902 -111130651 + L1PB3 LINE L1 3 2114 -4748 2409 76 0 0 chr11 39652902 39653216 -111130337 + L1PA8 LINE L1 5859 6172 0 6103 221 47 20 chr11 39653216 39654459 -111129094 + L1PB3 LINE L1 2114 3322 -3540 369 252 0 0 chr11 39654470 39654573 -111128980 + L1PB3 LINE L1 3618 3720 -3142 * 6401 205 20 16 chr11 39654562 39656555 -111126998 + L1PB3 LINE L1 4513 6510 -360 2410 123 0 0 chr11 39656665 39657022 -111126531 + L1PB3 LINE L1 6514 6870 0 367 428 33 8 chr11 39657117 39657360 -111126193 + L1MEc LINE L1 560 808 -5913 26 0 0 0 chr11 39657766 39657792 -111125761 + AT_rich Low_complexity Low_complexity 1 26 0 1529 278 80 54 chr11 39657793 39659707 -111123846 + L1MEc LINE L1 1152 3143 -3397 1202 343 97 41 chr11 39659744 39661196 -111122357 + ERVL LTR ERVL 2737 4235 -1250 422 149 27 0 chr11 39661423 39661497 -111122056 - MLT1F LTR MaLR -3 539 464 558 299 27 32 chr11 39661501 39661688 -111121865 - MLT1F LTR MaLR -350 192 7 592 331 34 45 chr11 39661700 39662053 -111121500 + ERVL LTR ERVL 4546 4894 -870 874 261 55 41 chr11 39662058 39662403 -111121150 - L1M4 LINE L1 -1235 4911 4562 314 329 32 51 chr11 39662414 39662562 -111120991 - LTR16A LTR ERVL 0 450 301 2086 137 21 61 chr11 39662562 39662941 -111120612 - THE1B LTR MaLR 0 364 1 10169 118 12 35 chr11 39662941 39664558 -111118995 - THE1B-int LTR MaLR 0 1580 1 2272 132 28 8 chr11 39664558 39664915 -111118638 - THE1B LTR MaLR 0 364 1 314 329 32 51 chr11 39664915 39664980 -111118573 - LTR16A LTR ERVL -146 304 239 187 290 90 40 chr11 39665732 39665832 -111117721 + L2 LINE L2 2947 3051 -221 1031 227 32 0 chr11 39666864 39667084 -111116469 + Charlie4 DNA MER1_type 64 290 -1671 3485 42 2 0 chr11 39667084 39667513 -111116040 - L1PA5 LINE L1 0 6154 5725 1955 106 0 32 chr11 39667514 39667798 -111115755 - AluY SINE Alu -36 275 1 198 378 25 8 chr11 39668209 39668328 -111115225 + L2 LINE L2 1803 1923 -1391 1438 222 43 0 chr11 39668710 39669034 -111114519 + MER58B DNA MER1_type 2 339 -2 240 304 14 0 chr11 39669113 39669182 -111114371 + MIR SINE MIR 87 156 -106 239 266 16 0 chr11 39669341 39669405 -111114148 - MLT1K LTR MaLR -2 586 522 23 33 0 0 chr11 39669407 39669437 -111114116 + AT_rich Low_complexity Low_complexity 1 30 0 224 167 45 15 chr11 39669454 39669520 -111114033 + (TA)n Simple_repeat Simple_repeat 1 68 0 23 0 0 0 chr11 39670382 39670405 -111113148 + AT_rich Low_complexity Low_complexity 1 23 0 1175 76 0 0 chr11 39670584 39670729 -111112824 + AluSq SINE Alu 75 219 -94 25 31 0 0 chr11 39671053 39671085 -111112468 + AT_rich Low_complexity Low_complexity 1 32 0 219 163 20 41 chr11 39671502 39671551 -111112002 + MIR SINE MIR 17 64 -198 432 0 0 0 chr11 39672253 39672301 -111111252 + (GA)n Simple_repeat Simple_repeat 1 48 0 274 286 83 0 chr11 39673067 39673151 -111110402 + MIR SINE MIR 81 171 -91 276 289 33 16 chr11 39673467 39673588 -111109965 + L2 LINE L2 2267 2389 -925 188 418 8 55 chr11 39673808 39674064 -111109489 + L2 LINE L2 2831 3074 -198 285 279 98 8 chr11 39674249 39674371 -111109182 + L2 LINE L2 3181 3313 0 288 356 86 6 chr11 39675337 39675511 -111108042 - MIR SINE MIR -74 188 1 25 31 0 0 chr11 39677344 39677376 -111106177 + AT_rich Low_complexity Low_complexity 1 32 0 216 0 0 0 chr11 39677435 39677459 -111106094 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 904 306 160 16 chr11 39677627 39678311 -111105242 - L2 LINE L2 0 3313 2529 331 333 58 13 chr11 39678314 39678470 -111105083 - MIR SINE MIR -34 228 66 1311 96 62 10 chr11 39678863 39679072 -111104481 - AluYa5 SINE Alu -91 220 1 1179 254 112 65 chr11 39679073 39679808 -111103745 - L1MDa LINE L1 -1904 4740 3972 296 246 0 14 chr11 39679852 39679921 -111103632 + Tigger5 DNA MER2_type 2256 2323 0 429 292 25 5 chr11 39679923 39680125 -111103428 - L1MDa LINE L1 -2688 3956 3751 920 265 43 34 chr11 39680140 39680586 -111102967 - L1MDa LINE L1 -3530 3114 2665 945 228 18 60 chr11 39680715 39680996 -111102557 - LTR4 LTR ERV1 -11 585 317 434 241 150 115 chr11 39681084 39681424 -111102129 - LTR4 LTR ERV1 -239 357 6 347 310 37 36 chr11 39681459 39681813 -111101740 - L1MDa LINE L1 -3936 2708 1179 933 291 80 38 chr11 39681963 39682540 -111101013 - L1M4 LINE L1 -5067 1475 875 23 68 0 0 chr11 39684080 39684124 -111099429 + AT_rich Low_complexity Low_complexity 1 44 0 260 213 0 33 chr11 39684133 39684194 -111099359 + MLT1J LTR MaLR 1 59 -452 561 236 17 11 chr11 39685099 39685273 -111098280 + MER104 DNA MER2_type 2 176 -4 718 165 8 16 chr11 39685417 39685544 -111098009 + FRAM SINE Alu 37 162 -14 402 245 35 120 chr11 39685615 39685713 -111097840 - L2 LINE L2 -590 2724 2650 1961 136 0 3 chr11 39685713 39685999 -111097554 + AluSx SINE Alu 1 285 -27 402 245 35 120 chr11 39685999 39686100 -111097453 - L2 LINE L2 -664 2650 2542 301 222 105 72 chr11 39686130 39686283 -111097270 - L1MC5 LINE L1 -45 7916 7759 2025 90 4 0 chr11 39686318 39686574 -111096979 + AluSp SINE Alu 25 281 -32 24 0 0 0 chr11 39686698 39686722 -111096831 + AT_rich Low_complexity Low_complexity 1 24 0 1078 262 112 44 chr11 39686729 39687463 -111096090 + HAL1b LINE L1 335 1118 -230 23 0 0 0 chr11 39687489 39687512 -111096041 + AT_rich Low_complexity Low_complexity 1 23 0 229 138 17 17 chr11 39687556 39687614 -111095939 + (TA)n Simple_repeat Simple_repeat 1 58 0 30 0 0 0 chr11 39687708 39687738 -111095815 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr11 39687831 39687860 -111095693 + AT_rich Low_complexity Low_complexity 1 29 0 318 278 58 88 chr11 39688465 39688670 -111094883 - MLT1K LTR MaLR -162 426 228 630 318 18 9 chr11 39689588 39689811 -111093742 + MIR SINE MIR 9 233 -29 343 258 45 0 chr11 39691157 39691246 -111092307 + L1MC4 LINE L1 6613 6705 -1337 192 357 14 14 chr11 39691643 39691713 -111091840 + L2 LINE L2 3187 3256 -16 613 242 37 65 chr11 39691886 39692101 -111091452 - L2 LINE L2 0 3313 3105 1102 143 14 90 chr11 39692280 39692503 -111091050 + MER2 DNA MER2_type 1 206 -139 299 299 0 0 chr11 39692563 39692630 -111090923 + MER2 DNA MER2_type 279 345 0 7519 142 52 10 chr11 39693895 39695035 -111088518 + HSMAR2 DNA Mariner 2 1201 -101 4555 61 35 0 chr11 39695035 39695628 -111087925 + L1PA7 LINE L1 5530 6143 -11 7519 142 52 10 chr11 39695628 39695733 -111087820 + HSMAR2 DNA Mariner 1201 1300 -2 803 274 42 45 chr11 39695734 39696070 -111087483 - L1ME1 LINE L1 -25 6141 5807 * 4157 222 28 2 chr11 39696059 39697520 -111086033 - L1MB7 LINE L1 -12 6172 4670 752 248 35 0 chr11 39697507 39697709 -111085844 - L1ME1 LINE L1 -327 5839 5631 * 1610 157 69 39 chr11 39699171 39699535 -111084018 + THE1C LTR MaLR 1 375 0 1855 61 8 16 chr11 39699875 39700162 -111083391 + AluY SINE Alu 68 352 0 246 134 19 17 chr11 39700214 39700272 -111083281 + MLT1J2 LTR MaLR 362 501 -41 30 27 0 0 chr11 39700538 39700575 -111082978 + AT_rich Low_complexity Low_complexity 1 37 0 562 319 30 33 chr11 39700639 39700909 -111082644 + L2 LINE L2 3045 3313 0 22 0 0 0 chr11 39700977 39700999 -111082554 + AT_rich Low_complexity Low_complexity 1 22 0 500 250 108 0 chr11 39703172 39703320 -111080233 - FRAM SINE Alu -1 165 2 1891 199 18 0 chr11 39706238 39706580 -111076973 + MER7A DNA MER2_type 1 346 0 754 51 0 0 chr11 39707261 39707359 -111076194 + L1P LINE L1 4783 4880 -1266 21 57 0 0 chr11 39708158 39708193 -111075360 + AT_rich Low_complexity Low_complexity 1 35 0 560 115 35 46 chr11 39708200 39708330 -111075223 - L1MA4A LINE L1 -27 6276 6139 515 327 75 5 chr11 39709141 39709340 -111074213 - MIR SINE MIR -45 217 5 23 68 0 0 chr11 39709373 39709417 -111074136 + AT_rich Low_complexity Low_complexity 1 44 0 2084 195 31 0 chr11 39709495 39709915 -111073638 + L1MA2 LINE L1 3576 4008 -2138 1994 169 31 19 chr11 39709915 39710275 -111073278 - THE1B LTR MaLR 0 364 1 11467 105 6 2 chr11 39710275 39711848 -111071705 - THE1B-int LTR MaLR 0 1580 1 910 164 66 0 chr11 39711848 39712000 -111071553 - THE1B LTR MaLR 0 364 203 6431 144 45 49 chr11 39712106 39714414 -111069139 + L1MA2 LINE L1 4004 6304 0 40341 54 4 7 chr11 39714789 39717353 -111066200 - L1PA4 LINE L1 0 6155 3584 5862 77 5 292 chr11 39717353 39719235 -111064318 - SVA Other Other -2 1384 43 234 0 0 0 chr11 39719235 39719261 -111064292 + (GGGAGA)n Simple_repeat Simple_repeat 1 26 0 40341 54 4 7 chr11 39719261 39722633 -111060920 - L1PA4 LINE L1 -2569 3586 237 261 0 0 0 chr11 39723185 39723214 -111060339 + (TG)n Simple_repeat Simple_repeat 2 30 0 1022 202 0 5 chr11 39723831 39724029 -111059524 + MER3 DNA MER1_type 13 209 0 25 31 0 0 chr11 39724338 39724370 -111059183 + AT_rich Low_complexity Low_complexity 1 32 0 230 208 125 83 chr11 39724645 39724765 -111058788 - MLT1H LTR MaLR -314 235 111 2076 99 3 7 chr11 39725148 39725451 -111058102 + L1PA8 LINE L1 5866 6167 -5 337 304 96 50 chr11 39726806 39727046 -111056507 - L2 LINE L2 -469 2845 2595 225 0 0 0 chr11 39727779 39727804 -111055749 + (CA)n Simple_repeat Simple_repeat 2 26 0 1449 209 47 12 chr11 39728934 39729273 -111054280 - MLT1A1 LTR MaLR -4 361 11 923 277 105 49 chr11 39729300 39729709 -111053844 + MLT1H LTR MaLR 1 485 -64 1713 167 31 3 chr11 39729709 39729996 -111053557 - AluJb SINE Alu -17 295 1 923 277 105 49 chr11 39729996 39730063 -111053490 + MLT1H LTR MaLR 485 547 -2 1493 129 0 0 chr11 39730338 39730555 -111052998 - AluSg/x SINE Alu 0 310 94 242 331 70 32 chr11 39730761 39730918 -111052635 + MIR SINE MIR 10 172 -90 3142 29 5 0 chr11 39730927 39731303 -111052250 + L1PA4 LINE L1 5778 6155 0 566 224 5 107 chr11 39731339 39731417 -111052136 - MIR SINE MIR -4 258 174 1974 114 0 4 chr11 39731417 39731767 -111051786 - AluSg SINE Alu 0 349 1 566 224 5 107 chr11 39731767 39731883 -111051670 - MIR SINE MIR -88 174 83 333 271 0 0 chr11 39731885 39731955 -111051598 - Zaphod DNA AcHobo -2 4029 3960 224 57 0 29 chr11 39731955 39731990 -111051563 + (GAAAA)n Simple_repeat Simple_repeat 2 35 0 291 308 26 0 chr11 39732847 39732925 -111050628 - Zaphod DNA AcHobo -3951 80 1 256 375 0 0 chr11 39732939 39733011 -111050542 - MIR SINE MIR -188 74 3 384 230 40 20 chr11 39734195 39734295 -111049258 - MIR SINE MIR 0 262 161 21 0 0 0 chr11 39734651 39734672 -111048881 + AT_rich Low_complexity Low_complexity 1 21 0 236 212 8 83 chr11 39734801 39734933 -111048620 + (TATAA)n Simple_repeat Simple_repeat 4 125 0 230 272 99 12 chr11 39736068 39736149 -111047404 - L2 LINE L2 0 3313 3226 370 318 47 7 chr11 39736561 39736709 -111046844 + MIR SINE MIR 70 223 -39 183 250 13 105 chr11 39738689 39738765 -111044788 - MER5A DNA MER1_type 0 189 121 239 326 130 11 chr11 39740373 39740557 -111042996 - L2 LINE L2 -9 3304 3099 326 321 74 19 chr11 39740839 39741054 -111042499 - L2 LINE L2 -557 2757 2531 1249 249 55 53 chr11 39741209 39741888 -111041665 - L1ME2 LINE L1 -47 6117 5409 625 279 31 25 chr11 39742004 39742326 -111041227 - L1ME2 LINE L1 -917 5229 4906 283 263 37 141 chr11 39742887 39743157 -111040396 - L2 LINE L2 -2770 544 303 222 229 42 104 chr11 39743201 39743297 -111040256 + MIR SINE MIR 94 183 -79 201 156 0 0 chr11 39743440 39743472 -111040081 + (TATG)n Simple_repeat Simple_repeat 4 35 0 478 108 12 48 chr11 39743995 39744078 -111039475 + MADE1 DNA Mariner 1 80 0 1610 221 40 80 chr11 39744245 39744571 -111038982 + MLT1D LTR MaLR 1 300 -205 2164 92 31 3 chr11 39744571 39744864 -111038689 + AluSc SINE Alu 8 308 -1 1610 221 40 80 chr11 39744864 39745063 -111038490 + MLT1D LTR MaLR 300 505 0 1340 209 72 17 chr11 39745363 39745708 -111037845 + MLT1A1 LTR MaLR 1 364 -1 681 188 113 75 chr11 39745713 39745926 -111037627 + MLT2B1 LTR ERVL 176 396 -124 1824 145 95 0 chr11 39746006 39746289 -111037264 + AluSg SINE Alu 1 310 0 272 215 15 0 chr11 39747386 39747451 -111036102 - MER2 DNA MER2_type -136 209 144 2688 79 6 0 chr11 39747612 39747965 -111035588 + THE1A LTR MaLR 1 355 0 1516 184 29 46 chr11 39748651 39748999 -111034554 + MER2 DNA MER2_type 2 343 -1 24 32 0 0 chr11 39749250 39749281 -111034272 + AT_rich Low_complexity Low_complexity 1 31 0 863 55 0 0 chr11 39749281 39749390 -111034163 - L1PA5 LINE L1 -16 6138 6030 865 213 0 48 chr11 39749411 39749599 -111033954 - MER58A DNA MER1_type -39 185 7 273 276 199 0 chr11 39750866 39750987 -111032566 - MIR3 SINE MIR -12 196 57 26 0 0 0 chr11 39751414 39751440 -111032113 + AT_rich Low_complexity Low_complexity 1 26 0 2341 92 0 0 chr11 39751750 39752044 -111031509 - AluY SINE Alu -3 308 15 236 287 58 35 chr11 39752368 39752455 -111031098 + L2 LINE L2 3225 3313 0 836 177 11 19 chr11 39752549 39752735 -111030818 - L1MA1 LINE L1 -464 5838 5657 7729 20 2 0 chr11 39752736 39753905 -111029648 - L1PA2 LINE L1 0 6155 4986 7091 24 0 1 chr11 39753905 39754742 -111028811 + L1PA2 LINE L1 4148 4983 -1163 2285 195 4 39 chr11 39754752 39755290 -111028263 + L1MA10 LINE L1 5815 6333 -1 280 294 228 0 chr11 39755460 39755640 -111027913 + MLT1K LTR MaLR 366 586 -2 24 32 0 0 chr11 39755870 39755901 -111027652 + AT_rich Low_complexity Low_complexity 1 31 0 459 133 51 0 chr11 39757719 39757817 -111025736 + GA-rich Low_complexity Low_complexity 3 105 0 360 0 0 0 chr11 39757834 39757874 -111025679 + (CAGGG)n Simple_repeat Simple_repeat 2 41 0 532 259 62 48 chr11 39758421 39758730 -111024823 + L1MC4a LINE L1 5655 5967 -1841 220 222 86 0 chr11 39758748 39758829 -111024724 + (TAAAG)n Simple_repeat Simple_repeat 5 92 0 322 274 57 16 chr11 39759152 39759276 -111024277 + L1MC5 LINE L1 7805 7933 -28 765 240 20 5 chr11 39759636 39759840 -111023713 - MER3 DNA MER1_type -1 208 2 218 0 61 0 chr11 39759924 39759957 -111023596 + (TTTTG)n Simple_repeat Simple_repeat 1 180 0 2014 107 7 4 chr11 39759957 39760238 -111023315 - AluSq SINE Alu -31 282 1 225 236 14 14 chr11 39760839 39760911 -111022642 + (TA)n Simple_repeat Simple_repeat 2 73 0 243 0 0 0 chr11 39760911 39760938 -111022615 + (CA)n Simple_repeat Simple_repeat 2 28 0 1432 308 65 25 chr11 39760944 39761453 -111022100 + MLT1E2 LTR MaLR 89 617 -9 235 297 110 8 chr11 39762029 39762147 -111021406 - MIR SINE MIR -2 260 131 260 316 58 4 chr11 39763270 39763381 -111020172 - MIR SINE MIR -89 119 2 263 322 167 23 chr11 39763927 39764101 -111019452 + MIR SINE MIR 56 254 -8 644 348 16 4 chr11 39764999 39765249 -111018304 + MIR SINE MIR 7 259 -3 275 273 13 0 chr11 39765470 39765547 -111018006 + MER117 DNA MER1_type 71 148 -49 4794 154 43 19 chr11 39765925 39766809 -111016744 + MER4D LTR ERV1 1 664 0 1348 239 73 23 chr11 39766838 39767274 -111016279 - LTR38 LTR ERV1 -12 544 87 21 0 0 0 chr11 39767302 39767323 -111016230 + AT_rich Low_complexity Low_complexity 1 21 0 595 115 0 0 chr11 39767622 39767709 -111015844 + MER39 LTR ERV1 1 87 -620 305 259 96 7 chr11 39767712 39767847 -111015706 + L1MA5A LINE L1 6147 6293 -4 630 0 47 0 chr11 39768265 39768350 -111015203 + (TCTA)n Simple_repeat Simple_repeat 2 90 0 200 332 141 48 chr11 39769114 39769512 -111014041 + L2 LINE L2 1224 1658 -1656 246 296 14 0 chr11 39769585 39769656 -111013897 - MIR SINE MIR -93 169 98 2416 134 3 6 chr11 39770416 39770781 -111012772 - THE1B LTR MaLR 0 364 1 1194 292 76 54 chr11 39771025 39771601 -111011952 + MLT1G LTR MaLR 7 590 0 23 33 0 0 chr11 39772814 39772844 -111010709 + AT_rich Low_complexity Low_complexity 1 30 0 31 44 0 0 chr11 39772901 39772946 -111010607 + AT_rich Low_complexity Low_complexity 1 45 0 306 278 197 50 chr11 39773057 39773316 -111010237 + L2 LINE L2 1827 2123 -1191 183 80 0 0 chr11 39773324 39773349 -111010204 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 679 325 85 10 chr11 39773511 39773806 -111009747 + L2 LINE L2 2640 2956 -358 26 30 0 0 chr11 39774258 39774291 -111009262 + AT_rich Low_complexity Low_complexity 1 33 0 559 297 108 9 chr11 39774658 39774870 -111008683 - MIR SINE MIR -1 261 29 23 0 0 0 chr11 39775578 39775601 -111007952 + AT_rich Low_complexity Low_complexity 1 23 0 279 0 0 0 chr11 39775910 39775945 -111007608 + (CA)n Simple_repeat Simple_repeat 1 66 0 279 0 0 0 chr11 39775945 39775976 -111007577 + (CA)n Simple_repeat Simple_repeat 2 32 0 2560 64 0 0 chr11 39776095 39776406 -111007147 + AluY SINE Alu 1 311 0 239 354 30 0 chr11 39776524 39776623 -111006930 + L1ME LINE L1 12 113 -5957 279 0 0 0 chr11 39776652 39776683 -111006870 + (TTA)n Simple_repeat Simple_repeat 3 33 0 4269 34 2 0 chr11 39776683 39777191 -111006362 - L1PA3 LINE L1 -18 6137 5629 8294 168 20 22 chr11 39777393 39779292 -111004261 - L1MA6 LINE L1 -697 5603 3706 3871 154 12 6 chr11 39779293 39779976 -111003577 + L1MA6 LINE L1 5614 6300 0 303 286 62 75 chr11 39780101 39780651 -111002902 - L1MEd LINE L1 -4931 1188 646 1026 216 147 63 chr11 39782911 39783230 -111000323 + L1M2c LINE L1 7 352 -6437 416 279 7 3 chr11 39783236 39783375 -111000178 + MER5A DNA MER1_type 6 187 -2 884 295 105 8 chr11 39783564 39783964 -110999589 - L1ME3 LINE L1 -67 6375 5937 696 246 36 0 chr11 39783981 39784148 -110999405 - LTR16C LTR ERVL 0 491 319 717 280 46 39 chr11 39784434 39784741 -110998812 - L1ME3 LINE L1 -512 5930 5622 267 299 33 56 chr11 39784739 39784843 -110998710 - L1ME3 LINE L1 -1091 5335 5237 * 1755 162 32 0 chr11 39784843 39785127 -110998426 + AluSx SINE Alu 1 293 -19 267 299 33 56 chr11 39785127 39785236 -110998317 - L1ME3 LINE L1 -1189 5237 5127 229 308 70 19 chr11 39785287 39785443 -110998110 - L1ME3 LINE L1 -5021 1405 1242 514 276 16 0 chr11 39785703 39785826 -110997727 + FLAM_A SINE Alu 1 125 -8 1719 128 81 36 chr11 39785830 39786189 -110997364 - THE1C LTR MaLR 0 375 1 4642 189 14 12 chr11 39786284 39787338 -110996215 + L1MB2 LINE L1 5112 6169 -2 1503 286 27 33 chr11 39787364 39787847 -110995706 - MLT1F LTR MaLR -62 480 1 26 30 0 0 chr11 39788702 39788735 -110994818 + AT_rich Low_complexity Low_complexity 1 33 0 28 48 0 0 chr11 39788749 39788791 -110994762 + AT_rich Low_complexity Low_complexity 1 42 0 237 299 52 10 chr11 39788791 39788888 -110994665 - MIR SINE MIR -14 248 148 357 331 32 0 chr11 39789120 39789274 -110994279 - MLT1J1 LTR MaLR -227 219 61 271 214 57 0 chr11 39789311 39789381 -110994172 + MLT1J LTR MaLR 1 74 -437 409 155 52 21 chr11 39789384 39789481 -110994072 - MER50 LTR ERV1 -130 604 505 463 237 10 0 chr11 39789523 39789620 -110993933 + MLT1J LTR MaLR 70 167 -344 643 275 77 10 chr11 39789717 39789924 -110993629 + MLT1J LTR MaLR 291 511 0 482 323 72 24 chr11 39790826 39790993 -110992560 + MIR3 SINE MIR 17 191 -17 38 75 0 0 chr11 39791270 39791350 -110992203 + AT_rich Low_complexity Low_complexity 1 80 0 497 198 17 35 chr11 39792054 39792170 -110991383 + MER20 DNA MER1_type 104 217 -2 26 30 0 0 chr11 39792183 39792216 -110991337 + AT_rich Low_complexity Low_complexity 1 33 0 234 0 0 0 chr11 39792629 39792655 -110990898 + (ATTG)n Simple_repeat Simple_repeat 3 28 0 1988 91 7 4 chr11 39792655 39792930 -110990623 - AluY SINE Alu -33 278 3 1043 244 4 15 chr11 39792947 39793209 -110990344 - L1MB8 LINE L1 -41 6137 5879 2447 171 45 6 chr11 39843346 39843860 -110939693 + L1MA9 LINE L1 5776 6309 -3 24 53 0 0 chr11 39843892 39843930 -110939623 + AT_rich Low_complexity Low_complexity 1 38 0 804 235 11 11 chr11 39844064 39844251 -110939302 - MER2 DNA MER2_type -1 344 158 2852 187 80 87 chr11 39844252 39844380 -110939173 + MER21A LTR ERV1 3 130 -801 5661 34 0 0 chr11 39844380 39845055 -110938498 - L1PA4 LINE L1 -6 6149 5475 2951 37 0 0 chr11 39845055 39845431 -110938122 - L1PA3 LINE L1 0 6155 5794 2852 187 80 87 chr11 39845431 39846236 -110937317 + MER21A LTR ERV1 128 931 0 775 184 95 0 chr11 39846236 39846382 -110937171 - MER2 DNA MER2_type -182 163 4 22 35 0 0 chr11 39846411 39846440 -110937113 + AT_rich Low_complexity Low_complexity 1 29 0 28 48 0 0 chr11 39846820 39846862 -110936691 + AT_rich Low_complexity Low_complexity 1 42 0 333 185 0 0 chr11 39847018 39847083 -110936470 + GA-rich Low_complexity Low_complexity 3 67 0 33 25 0 0 chr11 39847130 39847170 -110936383 + AT_rich Low_complexity Low_complexity 1 40 0 25 65 0 0 chr11 39847196 39847242 -110936311 + AT_rich Low_complexity Low_complexity 1 46 0 332 189 71 18 chr11 39847243 39847412 -110936141 + (TTATA)n Simple_repeat Simple_repeat 1 178 0 33 66 0 0 chr11 39847425 39847486 -110936067 + AT_rich Low_complexity Low_complexity 1 61 0 431 185 144 30 chr11 39848132 39848292 -110935261 - MIR SINE MIR -26 236 55 2341 191 63 15 chr11 39848391 39848853 -110934700 + LTR42 LTR ERVL 1 484 -11 272 204 19 0 chr11 39850540 39850594 -110932959 + L1ME4a LINE L1 5855 5909 -212 1016 267 209 25 chr11 39850594 39851039 -110932514 + MLT1G LTR MaLR 1 527 -63 375 244 78 22 chr11 39851054 39851234 -110932319 - MER63 DNA MER1_type -2 1058 869 347 89 18 0 chr11 39851314 39851370 -110932183 + (TA)n Simple_repeat Simple_repeat 1 57 0 1775 112 56 7 chr11 39852221 39852533 -110931020 + AluSx SINE Alu 3 327 0 38 51 0 0 chr11 39852694 39852753 -110930800 + AT_rich Low_complexity Low_complexity 1 59 0 22 25 0 25 chr11 39852872 39852891 -110930662 + AT_rich Low_complexity Low_complexity 1 19 -20 2045 134 0 0 chr11 39852891 39853175 -110930378 + AluSc SINE Alu 1 284 -25 22 25 0 25 chr11 39853175 39853195 -110930358 + AT_rich Low_complexity Low_complexity 19 39 0 4681 151 6 32 chr11 39853679 39854519 -110929034 - L1MC1 LINE L1 -2 6331 5514 216 170 0 0 chr11 39854596 39854649 -110928904 + A-rich Low_complexity Low_complexity 1 53 0 381 314 94 11 chr11 39854705 39854896 -110928657 + L1MEc LINE L1 540 746 -5650 1284 116 63 0 chr11 39854898 39855087 -110928466 + AluSp SINE Alu 2 202 -111 3679 148 53 26 chr11 39855136 39856228 -110927325 - MER11A LTR ERVK 0 1236 1 464 264 78 48 chr11 39856228 39856599 -110926954 + L1MEc LINE L1 853 1234 -5162 52 17 0 0 chr11 39856660 39856719 -110926834 + AT_rich Low_complexity Low_complexity 1 59 0 2001 142 0 7 chr11 39856829 39857131 -110926422 + AluSq SINE Alu 1 300 -13 3642 279 51 31 chr11 39857199 39858958 -110924595 + L1MEc LINE L1 2383 4176 -2039 1671 272 60 7 chr11 39859191 39859920 -110923633 - L1MCb LINE L1 -2906 3658 2891 1310 251 39 31 chr11 39859945 39860430 -110923123 - L1M4 LINE L1 -897 5747 5259 2310 267 57 37 chr11 39860459 39861565 -110921988 - L1M4 LINE L1 -2191 4453 3326 1776 164 146 11 chr11 39861565 39861942 -110921611 - MSTA LTR MaLR 0 428 1 8798 164 7 35 chr11 39861942 39863565 -110919988 - MSTA-int LTR MaLR 0 1580 3 1949 160 128 8 chr11 39863567 39863949 -110919604 - MSTA LTR MaLR 0 428 1 1238 274 82 59 chr11 39863965 39864099 -110919454 - L1M4 LINE L1 -5572 970 841 207 0 0 0 chr11 39864099 39864122 -110919431 + (CAAAC)n Simple_repeat Simple_repeat 1 23 0 1238 274 82 59 chr11 39864122 39864582 -110918971 - L1M4 LINE L1 -5701 841 362 300 291 60 26 chr11 39864584 39864701 -110918852 - L1M4 LINE L1 -6269 273 153 2057 227 85 68 chr11 39864778 39865783 -110917770 - L1MCb LINE L1 -4761 1803 757 2691 270 67 22 chr11 39865796 39866260 -110917293 - L1MCb LINE L1 -5012 1033 591 3774 150 4 64 chr11 39866260 39866995 -110916558 - LTR8 LTR ERV1 0 691 1 2691 270 67 22 chr11 39866995 39867485 -110916068 - L1MCb LINE L1 -5454 591 36 355 339 77 46 chr11 39867596 39867753 -110915800 + L1ME2 LINE L1 2692 2843 -3303 2235 95 7 3 chr11 39867753 39868059 -110915494 - AluSq SINE Alu -6 307 1 355 339 77 46 chr11 39868059 39868252 -110915301 + L1ME2 LINE L1 2843 3053 -3093 229 261 17 35 chr11 39868347 39868462 -110915091 + L1ME2 LINE L1 5275 5387 -2421 28 71 0 0 chr11 39869567 39869623 -110913930 + AT_rich Low_complexity Low_complexity 1 56 0 367 333 51 1 chr11 39869848 39869997 -110913556 - MIR SINE MIR -68 140 39 28 0 0 0 chr11 39870528 39870556 -110912997 + AT_rich Low_complexity Low_complexity 1 28 0 7389 25 1 0 chr11 39870670 39872131 -110911422 - L1PA3 LINE L1 -46 6109 4648 401 328 41 31 chr11 39872124 39872319 -110911234 + L1MEc LINE L1 116 312 -6084 * 562 282 54 37 chr11 39872405 39872773 -110910780 + L1ME2 LINE L1 5657 6027 -137 271 299 39 19 chr11 39872779 39872933 -110910620 + L1MA10 LINE L1 6174 6330 -4 1035 191 164 43 chr11 39873030 39873354 -110910199 + MLT1A1 LTR MaLR 1 363 -2 22 0 0 0 chr11 39874186 39874208 -110909345 + AT_rich Low_complexity Low_complexity 1 22 0 319 321 36 29 chr11 39874358 39874498 -110909055 + MIR SINE MIR 48 188 -74 293 283 215 34 chr11 39874633 39874810 -110908743 + L2 LINE L2 2827 3035 -278 1403 214 38 13 chr11 39875641 39875954 -110907599 + MER58B DNA MER1_type 3 323 -18 812 169 46 72 chr11 39876329 39876524 -110907029 + MLT1A1 LTR MaLR 2 191 -174 826 251 1 11 chr11 39877954 39878163 -110905390 - MLT1A2 LTR MaLR 0 386 184 1845 137 52 27 chr11 39878255 39878584 -110904969 - THE1B LTR MaLR -25 339 3 266 77 0 0 chr11 39878585 39878624 -110904929 - THE1B-int LTR MaLR 0 1580 1542 * 8798 115 7 1 chr11 39878607 39879843 -110903710 - THE1B-int LTR MaLR -336 1244 1 2169 127 48 22 chr11 39879843 39880198 -110903355 - THE1B LTR MaLR 0 364 1 553 143 10 41 chr11 39880325 39880423 -110903130 - MLT1A2 LTR MaLR -276 98 4 802 221 15 56 chr11 39880483 39880678 -110902875 + MER58A DNA MER1_type 38 224 0 757 228 5 46 chr11 39880737 39880934 -110902619 - MER5A DNA MER1_type 0 189 1 385 307 65 7 chr11 39881244 39881397 -110902156 - MIR SINE MIR -95 167 6 208 263 20 101 chr11 39881691 39881790 -110901763 + L3 LINE CR1 572 662 -915 345 364 15 39 chr11 39881836 39882042 -110901511 - MIR SINE MIR -42 220 20 252 122 0 0 chr11 39882834 39882875 -110900678 + (TG)n Simple_repeat Simple_repeat 2 42 0 835 287 21 4 chr11 39883427 39883664 -110899889 - MIR SINE MIR -10 252 12 491 278 31 6 chr11 39883947 39884109 -110899444 - Charlie8 DNA MER1_type -1954 463 298 189 0 0 0 chr11 39884657 39884678 -110898875 + (TA)n Simple_repeat Simple_repeat 2 22 0 272 336 187 8 chr11 39884695 39884829 -110898724 - MLT1I LTR MaLR -66 343 186 22 0 0 0 chr11 39886718 39886740 -110896813 + AT_rich Low_complexity Low_complexity 1 22 0 204 175 25 0 chr11 39886919 39886959 -110896594 + (TA)n Simple_repeat Simple_repeat 1 41 0 296 316 37 0 chr11 39887174 39887310 -110896243 + L1MC4 LINE L1 6870 7010 -1032 200 333 52 31 chr11 39887841 39887937 -110895616 - MIR SINE MIR -142 120 23 491 45 0 15 chr11 39888886 39888953 -110894600 + (TTCC)n Simple_repeat Simple_repeat 2 67 0 1791 161 7 3 chr11 39888953 39889258 -110894295 - AluSg SINE Alu -2 308 3 217 205 0 0 chr11 39889355 39889394 -110894159 + (TG)n Simple_repeat Simple_repeat 2 40 0 853 243 11 107 chr11 39889783 39890063 -110893490 - MER21B LTR ERV1 -610 253 1 555 327 67 0 chr11 39891430 39891638 -110891915 + MIR SINE MIR 39 260 -2 633 303 60 23 chr11 39891662 39891880 -110891673 - MIR SINE MIR -27 235 10 11743 206 22 39 chr11 39893967 39897845 -110885708 + L1PA16 LINE L1 1197 5137 -1732 243 0 0 0 chr11 39897845 39897872 -110885681 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 1778 61 0 0 chr11 39897872 39898101 -110885452 - L1PA8 LINE L1 -11 6161 5933 11743 206 22 39 chr11 39898101 39898987 -110884566 + L1PA16 LINE L1 5136 6035 -834 2175 60 3 50 chr11 39898987 39899287 -110884266 + AluY SINE Alu 5 290 -21 11743 206 22 39 chr11 39899287 39900108 -110883445 + L1PA16 LINE L1 6035 6682 -187 1934 120 3 7 chr11 39900108 39900391 -110883162 + AluSx SINE Alu 1 282 -30 11743 206 22 39 chr11 39900391 39900576 -110882977 + L1PA16 LINE L1 6682 6869 0 30 0 0 0 chr11 39903202 39903232 -110880321 + AT_rich Low_complexity Low_complexity 1 30 0 27 62 0 0 chr11 39903398 39903446 -110880107 + AT_rich Low_complexity Low_complexity 1 48 0 344 259 19 37 chr11 39903612 39903720 -110879833 - L2 LINE L2 0 3313 3208 609 308 72 42 chr11 39903860 39903950 -110879603 - LTR40a LTR ERVL -2 517 431 1641 121 114 11 chr11 39903950 39904230 -110879323 + AluSg1 SINE Alu 1 309 0 609 308 72 42 chr11 39904230 39904525 -110879028 - LTR40a LTR ERVL -88 431 120 408 286 101 48 chr11 39904549 39904738 -110878815 - LTR40a LTR ERVL -320 199 1 204 97 0 0 chr11 39905570 39905601 -110877952 + (TAAAA)n Simple_repeat Simple_repeat 5 35 0 203 276 0 0 chr11 39905910 39905968 -110877585 + (TA)n Simple_repeat Simple_repeat 2 59 0 204 97 0 0 chr11 39905982 39906013 -110877540 + (TG)n Simple_repeat Simple_repeat 2 32 0 * 432 0 0 0 chr11 39906012 39906060 -110877493 + (TA)n Simple_repeat Simple_repeat 1 48 0 22 0 0 0 chr11 39907142 39907164 -110876389 + AT_rich Low_complexity Low_complexity 1 22 0 444 325 76 19 chr11 39907812 39907969 -110875584 - MIR3 SINE MIR -10 198 33 27 87 0 0 chr11 39908795 39908864 -110874689 + AT_rich Low_complexity Low_complexity 1 69 0 23 0 0 0 chr11 39909040 39909063 -110874490 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr11 39910084 39910108 -110873445 + AT_rich Low_complexity Low_complexity 1 24 0 1379 132 36 0 chr11 39910115 39910365 -110873188 - L1MA7 LINE L1 -5 6286 6028 251 200 133 92 chr11 39910485 39910605 -110872948 - L2 LINE L2 0 3313 3189 246 327 45 9 chr11 39910691 39910801 -110872752 + MIR SINE MIR 47 160 -102 22 70 0 0 chr11 39912406 39912449 -110871104 + AT_rich Low_complexity Low_complexity 1 43 0 315 373 46 0 chr11 39912506 39912659 -110870894 - MIR SINE MIR -49 213 54 284 317 48 3 chr11 39913251 39913415 -110870138 + MIR SINE MIR 13 228 -34 484 42 28 0 chr11 39914543 39914614 -110868939 + (TC)n Simple_repeat Simple_repeat 2 74 0 396 0 0 0 chr11 39914705 39914749 -110868804 + (TA)n Simple_repeat Simple_repeat 1 44 0 236 279 51 13 chr11 39914812 39914891 -110868662 + MLT1J1 LTR MaLR 80 161 -285 675 279 89 42 chr11 39916260 39916640 -110866913 + L1ME3A LINE L1 5725 6122 -48 23 0 0 0 chr11 39917111 39917134 -110866419 + AT_rich Low_complexity Low_complexity 1 23 0 396 259 6 51 chr11 39917513 39917671 -110865882 + L1MB7 LINE L1 581 731 -5549 2191 266 39 52 chr11 39917678 39918556 -110864997 + L1MB7 LINE L1 1059 1947 -4435 1407 219 0 24 chr11 39918556 39918875 -110864678 + AluJb SINE Alu 2 313 0 2191 266 39 52 chr11 39918875 39919930 -110863623 + L1MB7 LINE L1 1947 3043 -3339 1653 254 30 10 chr11 39920006 39920636 -110862917 + L1MB7 LINE L1 5158 5803 -743 1506 222 39 10 chr11 39920637 39921043 -110862510 + L1MB7 LINE L1 6003 6420 0 1949 161 3 0 chr11 39923490 39923800 -110859753 - AluSx SINE Alu -1 311 1 273 298 62 67 chr11 39924479 39924657 -110858896 - L2 LINE L2 -2474 840 664 1627 282 77 39 chr11 39924703 39925274 -110858279 + MLT1E LTR MaLR 1 593 0 198 71 0 0 chr11 39925527 39925555 -110857998 + (CAT)n Simple_repeat Simple_repeat 3 30 0 207 189 0 0 chr11 39925595 39925632 -110857921 + MIR SINE MIR 190 226 -36 1892 239 69 31 chr11 39928126 39928604 -110854949 + MLT1D LTR MaLR 10 505 0 22 70 0 0 chr11 39928829 39928872 -110854681 + AT_rich Low_complexity Low_complexity 1 43 0 293 309 186 21 chr11 39929129 39929317 -110854236 + MIR SINE MIR 12 230 -32 23 86 0 0 chr11 39929770 39929828 -110853725 + AT_rich Low_complexity Low_complexity 1 58 0 1780 115 0 0 chr11 39930005 39930239 -110853314 + AluSc SINE Alu 1 234 -75 2207 149 25 3 chr11 39930422 39930778 -110852775 + THE1B LTR MaLR 1 364 0 2160 140 21 9 chr11 39930990 39931449 -110852104 + L1M1 LINE L1 5152 5616 -687 1851 134 75 10 chr11 39931450 39931824 -110851729 - LTR7 LTR ERV1 0 450 1 3125 129 35 0 chr11 39931824 39932334 -110851219 - HERVH LTR ERV1 0 7713 7186 4980 158 6 4 chr11 39932444 39933401 -110850152 - HERVH LTR ERV1 -1805 5286 3873 1048 179 15 0 chr11 39933401 39933597 -110849956 - HERVH LTR ERV1 -4375 3338 3140 * 4324 139 2 21 chr11 39933576 39934788 -110848765 - HERVH LTR ERV1 -4718 2995 1711 2719 145 43 8 chr11 39934783 39935613 -110847940 - HERVH LTR ERV1 -6558 1155 1 * 1807 137 19 7 chr11 39935613 39935925 -110847628 - LTR7 LTR ERV1 0 450 85 3318 138 81 5 chr11 39935926 39936566 -110846987 + L1MA4A LINE L1 5613 6301 -2 180 135 0 0 chr11 39936642 39936679 -110846874 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 1997 124 0 13 chr11 39936775 39937074 -110846479 + AluSc SINE Alu 3 297 -12 1387 244 23 47 chr11 39937446 39937918 -110845635 + MLT1C LTR MaLR 7 467 0 291 162 0 95 chr11 39938243 39938317 -110845236 + MSTC LTR MaLR 1 67 -361 1326 178 232 11 chr11 39938329 39938678 -110844875 + MSTB LTR MaLR 1 426 0 8950 144 7 42 chr11 39938680 39940314 -110843239 + MSTA-int LTR MaLR 3 1580 0 1504 182 190 0 chr11 39940314 39940671 -110842882 + MSTA LTR MaLR 3 428 0 239 210 12 123 chr11 39941628 39941709 -110841844 - Tigger5 DNA MER2_type -1 2322 2251 620 271 105 48 chr11 39942277 39942649 -110840904 - L2 LINE L2 -5 3308 2916 309 346 11 43 chr11 39942704 39942889 -110840664 + MER5A DNA MER1_type 11 189 0 1258 296 74 40 chr11 39943983 39944554 -110838999 + MLT1E LTR MaLR 4 593 0 187 356 49 91 chr11 39944954 39945339 -110838214 + L2 LINE L2 2903 3271 -1 281 269 0 15 chr11 39945400 39945467 -110838086 + MIR SINE MIR 81 146 -116 799 315 52 29 chr11 39945514 39945860 -110837693 - L2 LINE L2 -9 3304 2951 22 35 0 0 chr11 39946310 39946339 -110837214 + AT_rich Low_complexity Low_complexity 1 29 0 4277 182 50 12 chr11 39947709 39948841 -110834712 - L1MA6 LINE L1 -3 7716 6496 7986 206 27 10 chr11 39949112 39950958 -110832595 - L1MA6 LINE L1 -1053 6512 4636 967 206 79 82 chr11 39951048 39951623 -110831930 - L1MA6 LINE L1 -3664 3901 3313 231 339 59 47 chr11 39951962 39952198 -110831355 - MIR SINE MIR -18 244 6 220 359 99 8 chr11 39952488 39952619 -110830934 - L2 LINE L2 -4 3309 3167 22 35 0 0 chr11 39952641 39952670 -110830883 + AT_rich Low_complexity Low_complexity 1 29 0 1382 164 89 89 chr11 39954021 39954423 -110829130 + MSTB1 LTR MaLR 39 432 0 390 247 44 70 chr11 39954452 39954679 -110828874 - L1ME1 LINE L1 -201 6034 5814 1982 191 16 3 chr11 39954681 39955053 -110828500 - MLT1B LTR MaLR 0 390 14 947 242 22 9 chr11 39955115 39955338 -110828215 - L1ME1 LINE L1 -460 5773 5548 246 32 0 0 chr11 39955352 39955383 -110828170 + (TG)n Simple_repeat Simple_repeat 1 31 0 201 74 0 0 chr11 39955383 39955410 -110828143 + (GA)n Simple_repeat Simple_repeat 2 28 0 1414 201 75 3 chr11 39955459 39955753 -110827800 + MER7A DNA MER2_type 8 320 -26 1065 130 5 0 chr11 39955894 39956079 -110827474 - L1MA6 LINE L1 0 6300 6115 4076 167 21 49 chr11 39956182 39957410 -110826143 - L1MA6 LINE L1 -205 6095 4907 3324 157 22 18 chr11 39957483 39958150 -110825403 - L1MC1 LINE L1 0 6333 5664 1410 253 46 34 chr11 39958164 39958725 -110824828 - L1ME1 LINE L1 -841 5374 4807 660 160 37 9 chr11 39958924 39959101 -110824452 - L1P1 LINE L1 -678 5477 5295 955 261 138 35 chr11 39959140 39959949 -110823604 - L1ME1 LINE L1 -3875 2521 1629 3571 223 37 22 chr11 39959972 39960549 -110823004 - L1MB3 LINE L1 -9 6174 5584 4947 24 3 0 chr11 39960549 39961129 -110822424 + L1PA4 LINE L1 5574 6155 0 3571 223 37 22 chr11 39961129 39961604 -110821949 - L1MB3 LINE L1 -599 5584 5118 255 297 31 8 chr11 39961598 39961744 -110821809 - L1MDa LINE L1 -4614 2951 2774 * 751 168 0 0 chr11 39961827 39961952 -110821601 - AluJb SINE Alu -29 283 159 473 191 0 0 chr11 39961959 39962043 -110821510 - AluS SINE Alu -229 84 1 485 228 0 0 chr11 39963807 39963899 -110819654 - MER5A DNA MER1_type -89 100 9 3736 181 47 13 chr11 39964610 39965311 -110818242 - MER44D DNA MER2_type 0 605 9 21 36 0 0 chr11 39965352 39965380 -110818173 + AT_rich Low_complexity Low_complexity 1 28 0 381 351 56 48 chr11 39965584 39965651 -110817902 - MLT1D LTR MaLR 0 505 440 2591 3 0 0 chr11 39965651 39965933 -110817620 + AluYb8 SINE Alu 37 318 0 381 351 56 48 chr11 39965933 39966346 -110817207 - MLT1D LTR MaLR -65 440 21 1506 255 42 37 chr11 39966491 39966919 -110816634 - MLT1D LTR MaLR -74 431 2 752 344 25 19 chr11 39966921 39967281 -110816272 + MLT1K LTR MaLR 82 443 -145 27 62 0 0 chr11 39968625 39968673 -110814880 + AT_rich Low_complexity Low_complexity 1 48 0 219 355 56 52 chr11 39969675 39969906 -110813647 + MIR SINE MIR 1 232 -30 262 312 21 0 chr11 39969913 39970006 -110813547 + (TAG)n Simple_repeat Simple_repeat 2 96 0 280 43 43 0 chr11 39971034 39971080 -110812473 + (TC)n Simple_repeat Simple_repeat 1 48 0 268 368 14 35 chr11 39971516 39971804 -110811749 + ERVL LTR ERVL 5042 5323 -441 1053 329 17 41 chr11 39971997 39972307 -110811246 + LTR16A LTR ERVL 27 326 -124 2363 81 0 3 chr11 39972307 39972617 -110810936 - AluSc SINE Alu 0 309 1 1053 329 17 41 chr11 39972617 39972722 -110810831 + LTR16A LTR ERVL 326 432 -18 4508 175 14 49 chr11 39972923 39974170 -110809383 - L1MA8 LINE L1 -41 6250 5050 647 191 14 7 chr11 39974173 39974320 -110809233 + L1 LINE L1 5135 5282 -864 6592 30 0 0 chr11 39975145 39975940 -110807613 - L1P LINE L1 -3412 2734 1940 7457 31 1 0 chr11 39975940 39976910 -110806643 + L1PA3 LINE L1 5189 6159 0 22 35 0 0 chr11 39977072 39977101 -110806452 + AT_rich Low_complexity Low_complexity 1 29 0 365 94 0 50 chr11 39977106 39977183 -110806370 - MLT2B1 LTR ERVL 0 520 443 273 194 10 39 chr11 39977183 39977286 -110806267 + (CATATA)n Simple_repeat Simple_repeat 4 103 0 1428 224 126 11 chr11 39977323 39977703 -110805850 - MLT2B1 LTR ERVL -91 429 6 22 0 0 0 chr11 39978034 39978056 -110805497 + AT_rich Low_complexity Low_complexity 1 22 0 1469 250 30 41 chr11 39978063 39978571 -110804982 - MLT1D LTR MaLR -1 504 3 453 231 19 139 chr11 39978578 39978794 -110804759 - MLT1D-int LTR MaLR -6 1729 1237 196 354 14 95 chr11 39979722 39979869 -110803684 - L2 LINE L2 0 3272 3138 24 0 0 0 chr11 39979873 39979897 -110803656 + AT_rich Low_complexity Low_complexity 1 24 0 5069 200 13 29 chr11 39980571 39981213 -110802340 + L1ME4a LINE L1 19 640 -5786 180 0 0 0 chr11 39981213 39981233 -110802320 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 5069 200 13 29 chr11 39981233 39981640 -110801913 + L1ME4a LINE L1 640 1052 -5374 40 83 0 0 chr11 39981692 39981788 -110801765 + AT_rich Low_complexity Low_complexity 1 96 0 456 258 97 32 chr11 39981788 39981846 -110801707 + L1ME4a LINE L1 3839 3892 -2534 1142 129 129 105 chr11 39981846 39981883 -110801670 - THE1C LTR MaLR -2 373 338 1828 146 3 53 chr11 39981883 39982206 -110801347 + AluSx SINE Alu 1 307 -5 1142 129 129 105 chr11 39982206 39982531 -110801022 - THE1C LTR MaLR -37 338 2 456 258 97 32 chr11 39982531 39982720 -110800833 + L1ME4a LINE L1 3892 4102 -2324 323 227 0 0 chr11 39982768 39982834 -110800719 - L1ME4a LINE L1 -1254 5172 5107 262 287 61 33 chr11 39982843 39983024 -110800529 + L1ME4a LINE L1 5142 5327 -1099 258 248 8 48 chr11 39983266 39983333 -110800220 + L1 LINE L1 3176 3244 -2902 187 54 54 0 chr11 39983333 39983370 -110800183 + (TATAA)n Simple_repeat Simple_repeat 2 40 0 2306 158 31 14 chr11 39983377 39983796 -110799757 - MSTA LTR MaLR -2 426 1 258 248 8 48 chr11 39983796 39983845 -110799708 + L1 LINE L1 3250 3295 -2851 188 348 0 0 chr11 39983882 39983928 -110799625 + MIR SINE MIR 37 82 -180 303 247 45 45 chr11 39983932 39984021 -110799532 + MIR SINE MIR 57 145 -117 571 331 47 44 chr11 39984025 39984390 -110799163 - L2 LINE L2 -5 3308 2943 246 268 161 18 chr11 39984524 39984636 -110798917 - MIR SINE MIR -111 151 24 2482 115 8 16 chr11 39984817 39985191 -110798362 + THE1C LTR MaLR 5 375 0 191 204 20 0 chr11 39985216 39985265 -110798288 + (TA)n Simple_repeat Simple_repeat 1 50 0 2089 121 0 3 chr11 39985364 39985654 -110797899 - AluSq SINE Alu -14 299 11 291 248 10 30 chr11 39985903 39986004 -110797549 + (CATA)n Simple_repeat Simple_repeat 4 102 0 27 81 0 0 chr11 39986011 39986073 -110797480 + AT_rich Low_complexity Low_complexity 1 62 0 305 62 21 0 chr11 39986888 39986936 -110796617 + (TC)n Simple_repeat Simple_repeat 2 50 0 603 275 7 0 chr11 39986938 39987080 -110796473 - FRAM SINE Alu -33 143 1 27 49 0 0 chr11 39987160 39987201 -110796352 + AT_rich Low_complexity Low_complexity 1 41 0 453 257 56 32 chr11 39987203 39987487 -110796066 - L1M4 LINE L1 -758 5388 5098 418 380 24 5 chr11 39987519 39987929 -110795624 + L1ME4a LINE L1 5681 6098 -344 23 33 0 0 chr11 39988241 39988271 -110795282 + AT_rich Low_complexity Low_complexity 1 30 0 216 67 0 0 chr11 39988638 39988668 -110794885 + (GA)n Simple_repeat Simple_repeat 1 30 0 214 244 0 0 chr11 39988685 39988730 -110794823 + GA-rich Low_complexity Low_complexity 1 45 0 381 43 0 0 chr11 39989008 39989055 -110794498 + (TA)n Simple_repeat Simple_repeat 2 48 0 309 314 58 29 chr11 39989068 39989205 -110794348 + L1ME4a LINE L1 6255 6395 -6 29 28 0 0 chr11 39989979 39990015 -110793538 + AT_rich Low_complexity Low_complexity 1 36 0 256 111 0 0 chr11 39990168 39990213 -110793340 + MER4-int LTR ERV1 1112 1156 -5442 216 0 0 0 chr11 39990215 39990239 -110793314 + (GA)n Simple_repeat Simple_repeat 1 24 0 1367 215 59 99 chr11 39991129 39991655 -110791898 - MLT1D LTR MaLR 0 505 1 503 332 62 16 chr11 39991771 39992015 -110791538 + MIR SINE MIR 7 261 -1 251 177 16 0 chr11 39992246 39992308 -110791245 + A-rich Low_complexity Low_complexity 5 67 0 1694 210 14 78 chr11 39992387 39992825 -110790728 - MSTB LTR MaLR -16 410 1 261 0 0 0 chr11 39992835 39992864 -110790689 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 243 311 34 8 chr11 39992903 39993022 -110790531 + MLT1H LTR MaLR 46 167 -382 304 58 19 19 chr11 39993153 39993205 -110790348 + (TA)n Simple_repeat Simple_repeat 2 53 0 3089 171 47 15 chr11 39993955 39994746 -110788807 + L1MA8 LINE L1 4668 5481 -762 985 153 0 55 chr11 39994755 39994938 -110788615 + AluSg/x SINE Alu 138 310 -2 3624 164 20 72 chr11 39994939 39995787 -110787766 + L1MA8 LINE L1 5484 6287 -4 237 227 0 15 chr11 39996166 39996232 -110787321 + (ATG)n Simple_repeat Simple_repeat 2 66 0 195 284 11 53 chr11 39996235 39996330 -110787223 - MIR SINE MIR 0 262 172 360 311 0 0 chr11 39996357 39996460 -110787093 - MIR SINE MIR -7 255 153 431 179 9 0 chr11 39996504 39996610 -110786943 + (TA)n Simple_repeat Simple_repeat 1 107 0 2345 228 62 41 chr11 39996729 39997737 -110785816 + L1 LINE L1 29 1168 -4160 689 246 30 62 chr11 39997737 39998025 -110785528 + LTR1 LTR ERV1 1 425 -563 4334 209 31 32 chr11 39998053 39999383 -110784170 - L1 LINE L1 -3831 3734 2404 1262 187 121 91 chr11 39999385 39999870 -110783683 - LTR1B LTR ERV1 0 1020 344 11578 211 25 21 chr11 39999876 40002824 -110780729 + L1 LINE L1 2500 5460 -868 1453 96 5 5 chr11 40002824 40003032 -110780521 + L1PA7 LINE L1 5641 5848 -306 194 135 27 27 chr11 40003089 40003163 -110780390 + (TA)n Simple_repeat Simple_repeat 2 75 0 451 295 83 51 chr11 40003684 40003938 -110779615 + MIR SINE MIR 1 262 0 2564 48 3 0 chr11 40004571 40004880 -110778673 + AluY SINE Alu 2 311 0 258 277 93 54 chr11 40005028 40005360 -110778193 + L1M4 LINE L1 4509 4853 -1293 843 212 11 16 chr11 40005514 40005703 -110777850 + MER5A DNA MER1_type 1 188 -1 1305 233 52 40 chr11 40005825 40006228 -110777325 + MLT1C LTR MaLR 59 466 -1 596 264 6 25 chr11 40006273 40006432 -110777121 - MLT1J2 LTR MaLR -292 158 3 36 40 0 0 chr11 40008098 40008148 -110775405 + AT_rich Low_complexity Low_complexity 1 50 0 1859 164 10 0 chr11 40008263 40008562 -110774991 - AluSx SINE Alu -6 306 5 387 281 26 18 chr11 40008621 40008735 -110774818 + MLT1E LTR MaLR 7 121 -472 386 295 33 8 chr11 40008776 40008898 -110774655 + MLT1E LTR MaLR 119 243 -350 329 220 34 0 chr11 40008975 40009034 -110774519 + MLT1E1 LTR MaLR 280 340 -253 381 162 0 0 chr11 40009134 40009202 -110774351 + A-rich Low_complexity Low_complexity 1 68 0 520 135 250 7 chr11 40009217 40009357 -110774196 + MLT1E1 LTR MaLR 410 649 -5 457 296 37 25 chr11 40010042 40010204 -110773349 + Charlie1 DNA MER1_type 6 169 -2592 2636 118 47 7 chr11 40010238 40010663 -110772890 + L1PA15 LINE L1 5711 6152 -13 570 266 12 41 chr11 40010735 40010904 -110772649 + MER63A DNA MER1_type 47 210 0 356 197 15 0 chr11 40010930 40010996 -110772557 + Charlie1 DNA MER1_type 2693 2759 -2 1814 135 63 61 chr11 40011187 40011550 -110772003 + THE1B LTR MaLR 1 364 0 10820 116 11 1 chr11 40011550 40013115 -110770438 + THE1B-int LTR MaLR 1 1580 0 1750 104 61 29 chr11 40013115 40013394 -110770159 + THE1B LTR MaLR 1 288 -76 1562 196 44 22 chr11 40016361 40016728 -110766825 - THE1C LTR MaLR 0 375 1 25 0 0 0 chr11 40017054 40017079 -110766474 + AT_rich Low_complexity Low_complexity 1 25 0 27 62 0 0 chr11 40017417 40017465 -110766088 + AT_rich Low_complexity Low_complexity 1 48 0 291 308 216 13 chr11 40018559 40018786 -110764767 + L2 LINE L2 2622 2894 -420 712 136 8 30 chr11 40018976 40019108 -110764445 - AluJb SINE Alu -26 286 158 1336 168 102 71 chr11 40019108 40019582 -110763971 + LTR1B LTR ERV1 291 783 -2 1921 167 39 64 chr11 40019628 40020065 -110763488 - MSTA LTR MaLR -2 426 1 339 347 16 0 chr11 40020264 40020385 -110763168 - MLT1I LTR MaLR -248 161 39 2132 112 0 3 chr11 40020550 40020844 -110762709 - AluSg SINE Alu -17 293 1 394 311 33 28 chr11 40021623 40021803 -110761750 - MIR SINE MIR -62 200 20 318 50 0 0 chr11 40021911 40021951 -110761602 + (TG)n Simple_repeat Simple_repeat 2 41 0 23 86 0 0 chr11 40022228 40022286 -110761267 + AT_rich Low_complexity Low_complexity 1 58 0 279 0 0 0 chr11 40022317 40022348 -110761205 + (T)n Simple_repeat Simple_repeat 1 31 0 297 371 82 35 chr11 40022858 40023173 -110760380 + L2 LINE L2 2981 3310 -3 198 0 0 0 chr11 40023544 40023566 -110759987 + (T)n Simple_repeat Simple_repeat 1 22 0 411 356 88 25 chr11 40025234 40025596 -110757957 + L2 LINE L2 2130 2514 -800 2083 119 7 0 chr11 40026063 40026358 -110757195 - AluSx SINE Alu -15 297 1 225 304 0 9 chr11 40026366 40026448 -110757105 - MIR SINE MIR -45 163 84 388 336 31 54 chr11 40028110 40028333 -110755220 + MIR SINE MIR 36 253 -9 3257 152 11 4 chr11 40030139 40030667 -110752886 - Tigger3b DNA MER2_type -1 1230 699 2317 164 36 5 chr11 40030950 40031365 -110752188 + MSTA LTR MaLR 1 428 0 449 235 22 22 chr11 40031366 40031502 -110752051 - L1ME1 LINE L1 -224 5942 5807 491 289 12 67 chr11 40031535 40031788 -110751765 - L1ME1 LINE L1 -340 5826 5588 1105 117 6 6 chr11 40031942 40032113 -110751440 - Tigger3b DNA MER2_type -718 513 343 197 163 20 0 chr11 40032114 40032163 -110751390 + (TA)n Simple_repeat Simple_repeat 2 51 0 1842 167 22 9 chr11 40032167 40032491 -110751062 - Tigger3b DNA MER2_type -902 329 2 377 195 0 26 chr11 40032491 40032567 -110750986 + MER21B LTR ERV1 17 90 -773 236 304 38 13 chr11 40032589 40032668 -110750885 + MER21B LTR ERV1 19 99 -764 21 57 0 0 chr11 40034667 40034702 -110748851 + AT_rich Low_complexity Low_complexity 1 35 0 476 32 16 0 chr11 40034717 40034779 -110748774 + (TAGA)n Simple_repeat Simple_repeat 3 65 0 410 271 23 8 chr11 40035550 40035683 -110747870 + L1MD2 LINE L1 6208 6342 -17 1532 205 65 8 chr11 40035695 40036065 -110747488 + L1MC3 LINE L1 6707 7097 -688 253 273 11 11 chr11 40036065 40036153 -110747400 + MLT1F1 LTR MaLR 35 122 -445 431 240 30 0 chr11 40036157 40036257 -110747296 + L1MC3 LINE L1 7189 7291 -494 1672 197 61 54 chr11 40036257 40036720 -110746833 - MER66A LTR ERV1 0 601 101 1867 226 43 4 chr11 40036806 40037276 -110746277 + L1MC3 LINE L1 7288 7775 -10 240 35 0 0 chr11 40037377 40037406 -110746147 + (CA)n Simple_repeat Simple_repeat 2 30 0 192 158 0 0 chr11 40037410 40037448 -110746105 + GA-rich Low_complexity Low_complexity 1 38 0 269 271 85 25 chr11 40037559 40037677 -110745876 + MIR SINE MIR 112 236 -26 1170 253 97 67 chr11 40037872 40038470 -110745083 + MLT1G LTR MaLR 1 581 -9 250 85 21 21 chr11 40038531 40038578 -110744975 + (TTTTG)n Simple_repeat Simple_repeat 4 50 0 31 0 0 0 chr11 40038735 40038766 -110744787 + AT_rich Low_complexity Low_complexity 1 31 0 480 18 0 0 chr11 40040362 40040419 -110743134 + (TG)n Simple_repeat Simple_repeat 2 58 0 182 36 0 36 chr11 40040521 40040549 -110743004 + (TTTTA)n Simple_repeat Simple_repeat 4 30 0 2479 183 41 18 chr11 40041931 40042728 -110740825 + L1MA9 LINE L1 4982 5785 -527 2166 164 79 33 chr11 40043594 40043964 -110739589 + L1MA9 LINE L1 5773 6172 -140 252 0 0 0 chr11 40043964 40043992 -110739561 + (CA)n Simple_repeat Simple_repeat 2 29 0 2166 164 79 33 chr11 40043992 40044103 -110739450 + L1MA9 LINE L1 6172 6276 -36 649 238 77 61 chr11 40044204 40044741 -110738812 - LTR48 LTR ERV1 0 787 3 378 322 154 0 chr11 40044835 40044978 -110738575 + MER5A DNA MER1_type 24 188 -1 306 0 0 0 chr11 40045051 40045085 -110738468 + (TTA)n Simple_repeat Simple_repeat 1 34 0 4701 72 14 0 chr11 40045086 40045712 -110737841 - L1PA7 LINE L1 -18 6136 5502 301 255 0 149 chr11 40045715 40045856 -110737697 - MIR SINE MIR -119 143 24 23 33 0 0 chr11 40046371 40046401 -110737152 + AT_rich Low_complexity Low_complexity 1 30 0 236 240 0 0 chr11 40048738 40048788 -110734765 - MIR SINE MIR -30 232 183 327 177 0 0 chr11 40048898 40048960 -110734593 + (CA)n Simple_repeat Simple_repeat 2 63 0 456 294 34 67 chr11 40049841 40050079 -110733474 - MIR SINE MIR -21 241 12 362 345 61 26 chr11 40050318 40050582 -110732971 - L1MC4 LINE L1 -43 7999 7727 2645 168 46 39 chr11 40050600 40051166 -110732387 - L1MB7 LINE L1 -23 6161 5592 395 248 62 55 chr11 40051175 40051449 -110732104 - L1MC5 LINE L1 -371 7590 7315 22 0 0 0 chr11 40052780 40052802 -110730751 + AT_rich Low_complexity Low_complexity 1 22 0 232 363 0 11 chr11 40053353 40053444 -110730109 - MIR3 SINE MIR -14 194 105 430 365 48 30 chr11 40053673 40054010 -110729543 + MLT1J LTR MaLR 45 387 -124 510 156 52 0 chr11 40054556 40054652 -110728901 - L1PA15 LINE L1 -4 6161 6061 296 164 0 0 chr11 40054861 40054916 -110728637 + L1MC/D LINE L1 5768 5822 -1986 231 188 0 0 chr11 40055950 40055998 -110727555 + (TAA)n Simple_repeat Simple_repeat 2 49 0 494 144 66 29 chr11 40056363 40056706 -110726847 + (TA)n Simple_repeat Simple_repeat 1 355 0 213 207 36 27 chr11 40056659 40056770 -110726783 + (TTATA)n Simple_repeat Simple_repeat 5 116 0 * 253 112 45 62 chr11 40056773 40056952 -110726601 + (TATAA)n Simple_repeat Simple_repeat 4 179 0 46 45 0 0 chr11 40056968 40057035 -110726518 + AT_rich Low_complexity Low_complexity 1 67 0 198 211 30 6 chr11 40057045 40057211 -110726342 + (TATAA)n Simple_repeat Simple_repeat 2 171 0 180 146 76 23 chr11 40057172 40057343 -110726210 + (TA)n Simple_repeat Simple_repeat 1 180 0 * 29 0 0 0 chr11 40057350 40057379 -110726174 + AT_rich Low_complexity Low_complexity 1 29 0 220 162 66 0 chr11 40057391 40057558 -110725995 + (TA)n Simple_repeat Simple_repeat 1 178 0 31 44 0 0 chr11 40057558 40057603 -110725950 + AT_rich Low_complexity Low_complexity 1 45 0 559 305 52 0 chr11 40057747 40057980 -110725573 + MER46C DNA MER2_type 79 323 -15 245 368 40 24 chr11 40058257 40058507 -110725046 + MIR SINE MIR 5 258 -4 853 111 15 7 chr11 40059270 40059405 -110724148 - L1PB2 LINE L1 0 6151 6016 25 0 0 0 chr11 40060004 40060029 -110723524 + AT_rich Low_complexity Low_complexity 1 25 0 313 175 48 0 chr11 40060045 40060211 -110723342 + (TA)n Simple_repeat Simple_repeat 1 174 0 22 70 0 0 chr11 40060224 40060267 -110723286 + AT_rich Low_complexity Low_complexity 1 43 0 304 142 65 7 chr11 40060267 40060422 -110723131 + (TA)n Simple_repeat Simple_repeat 1 164 0 397 159 0 69 chr11 40060433 40060622 -110722931 + (TTATA)n Simple_repeat Simple_repeat 4 179 0 281 100 20 50 chr11 40060624 40060724 -110722829 + (TATAA)n Simple_repeat Simple_repeat 5 101 0 205 109 83 13 chr11 40060724 40060889 -110722664 + (TA)n Simple_repeat Simple_repeat 1 176 0 258 232 152 0 chr11 40061705 40061817 -110721736 - MER103 DNA DNA -12 154 26 1868 198 75 39 chr11 40062145 40062639 -110720914 - MER67D LTR ERV1 0 514 3 27 87 0 0 chr11 40063264 40063333 -110720220 + AT_rich Low_complexity Low_complexity 1 69 0 498 204 35 0 chr11 40063746 40063859 -110719694 + L1MA3 LINE L1 9 125 -7440 1271 220 39 3 chr11 40063869 40064174 -110719379 + L1MA3 LINE L1 4115 4430 -3135 1914 104 7 174 chr11 40064180 40064593 -110718960 - LTR14B LTR ERVK 0 608 1 8029 189 23 6 chr11 40064594 40067829 -110715724 + L1MA3 LINE L1 4430 7719 -5 865 227 60 14 chr11 40067848 40068130 -110715423 + L1M4 LINE L1 2315 2609 -3537 707 149 2 128 chr11 40068195 40068305 -110715248 + L1MD1 LINE L1 6071 6193 -166 1223 94 0 6 chr11 40068305 40068486 -110715067 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 707 149 2 128 chr11 40068486 40068497 -110715056 + L1MD1 LINE L1 6193 6204 -155 2052 131 3 6 chr11 40068497 40068811 -110714742 - AluSp SINE Alu 0 313 1 707 149 2 128 chr11 40068811 40068885 -110714668 + L1MD1 LINE L1 6204 6358 -1 415 224 0 0 chr11 40068910 40068986 -110714567 + FRAM SINE Alu 23 98 -68 1245 255 39 11 chr11 40069011 40069392 -110714161 - L1M4 LINE L1 -2026 4120 3729 398 214 61 10 chr11 40069651 40069749 -110713804 - MIR SINE MIR 0 262 160 239 301 41 24 chr11 40069766 40069889 -110713664 - MIR SINE MIR -17 245 121 243 270 56 22 chr11 40072094 40072183 -110711370 - MIR SINE MIR 0 262 171 1437 207 24 52 chr11 40072183 40072401 -110711152 + MLT1A2 LTR MaLR 1 207 -167 2037 141 3 0 chr11 40072401 40072705 -110710848 + AluSx SINE Alu 1 305 -7 1437 207 24 52 chr11 40072705 40072865 -110710688 + MLT1A2 LTR MaLR 207 370 -4 310 261 0 0 chr11 40072867 40072932 -110710621 - MIR SINE MIR -85 177 113 267 370 110 0 chr11 40072996 40073142 -110710411 + MIR3 SINE MIR 29 190 -18 29 28 0 0 chr11 40073281 40073317 -110710236 + AT_rich Low_complexity Low_complexity 1 36 0 1715 163 32 0 chr11 40073638 40073920 -110709633 + AluSx SINE Alu 1 291 -21 913 180 92 15 chr11 40073921 40074155 -110709398 - L1MA6 LINE L1 0 6300 6047 277 388 26 0 chr11 40074282 40074434 -110709119 - MIR SINE MIR -32 230 75 411 322 103 21 chr11 40076061 40076294 -110707259 + MLT1K LTR MaLR 326 577 -11 181 309 55 0 chr11 40076758 40076813 -110706740 + L2 LINE L2 3248 3305 -8 233 0 62 0 chr11 40078213 40078245 -110705308 + (TTTTG)n Simple_repeat Simple_repeat 1 34 0 1982 129 0 7 chr11 40078245 40078527 -110705026 - AluSx SINE Alu -32 280 1 25 0 0 0 chr11 40079104 40079129 -110704424 + AT_rich Low_complexity Low_complexity 1 25 0 318 345 41 35 chr11 40079333 40079504 -110704049 + MER5A DNA MER1_type 17 188 -1 2945 202 57 3 chr11 40079581 40080250 -110703303 - L1MB3 LINE L1 0 6183 5479 600 309 28 19 chr11 40080235 40080555 -110702998 - L1M4 LINE L1 -3648 2734 2412 * 1058 244 48 0 chr11 40080575 40080722 -110702831 - AluJb SINE Alu -34 278 115 360 0 0 0 chr11 40080722 40080762 -110702791 + (TTA)n Simple_repeat Simple_repeat 2 41 0 1058 244 48 0 chr11 40080762 40080844 -110702709 - AluJb SINE Alu -197 115 38 9848 189 65 34 chr11 40080846 40083194 -110700359 - L1M4 LINE L1 -3960 2424 4 25 0 0 0 chr11 40083393 40083418 -110700135 + AT_rich Low_complexity Low_complexity 1 25 0 1166 228 38 8 chr11 40083556 40083819 -110699734 - AluJo SINE Alu -37 275 5 297 259 14 7 chr11 40084382 40084428 -110699125 + (TA)n Simple_repeat Simple_repeat 2 46 -99 1378 227 59 41 chr11 40084428 40084816 -110698737 - MSTD LTR MaLR -1 395 1 297 259 14 7 chr11 40084816 40084912 -110698641 + (TA)n Simple_repeat Simple_repeat 46 145 0 228 341 12 0 chr11 40086243 40086325 -110697228 - L2 LINE L2 -2 3311 3229 185 380 40 0 chr11 40086747 40086847 -110696706 - L2 LINE L2 -640 2674 2571 300 186 0 0 chr11 40086856 40086915 -110696638 + (TAG)n Simple_repeat Simple_repeat 2 60 0 1592 220 28 21 chr11 40086975 40087407 -110696146 + L1MC/D LINE L1 4585 5019 -1127 1394 220 16 0 chr11 40087408 40087717 -110695836 + L1MC/D LINE L1 5457 5770 -2015 1550 240 35 6 chr11 40087723 40088096 -110695457 + MLT2D LTR ERVL 1 480 -40 220 296 11 0 chr11 40088099 40088187 -110695366 + (TATG)n Simple_repeat Simple_repeat 4 92 0 22 35 0 0 chr11 40088252 40088281 -110695272 + AT_rich Low_complexity Low_complexity 1 29 0 275 57 0 0 chr11 40088389 40088424 -110695129 - MADE1 DNA Mariner 0 80 46 284 389 11 11 chr11 40088437 40088612 -110694941 - L2 LINE L2 -937 2377 2203 2351 112 23 0 chr11 40088630 40088977 -110694576 - THE1A LTR MaLR 0 355 1 11103 107 4 6 chr11 40088977 40089863 -110693690 - THE1A-int LTR MaLR 0 1580 695 1115 193 143 69 chr11 40089863 40090282 -110693271 + LTR7 LTR ERV1 1 450 0 11103 107 4 6 chr11 40090282 40090970 -110692583 - THE1A-int LTR MaLR -885 695 8 2572 105 0 0 chr11 40090970 40091321 -110692232 - THE1A LTR MaLR -3 352 2 334 326 107 46 chr11 40091540 40092000 -110691553 + MLT1J LTR MaLR 24 511 0 610 299 185 40 chr11 40092011 40092455 -110691098 + L2 LINE L2 2804 3311 -2 199 383 90 25 chr11 40092472 40092827 -110690726 - L2 LINE L2 -1106 2208 1831 31 26 0 0 chr11 40093468 40093506 -110690047 + AT_rich Low_complexity Low_complexity 1 38 0 207 289 92 13 chr11 40093773 40093849 -110689704 + MIR SINE MIR 48 129 -133 429 282 65 60 chr11 40093943 40094159 -110689394 + MIR SINE MIR 46 262 0 23 0 0 0 chr11 40094163 40094186 -110689367 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr11 40095563 40095586 -110687967 + AT_rich Low_complexity Low_complexity 1 23 0 2156 150 22 0 chr11 40096243 40096604 -110686949 + HSMAR2 DNA Mariner 1 369 -933 3073 265 39 54 chr11 40096610 40097656 -110685897 + L1PA11 LINE L1 9 1068 -6516 195 69 0 0 chr11 40097656 40097685 -110685868 + (CAA)n Simple_repeat Simple_repeat 2 30 0 3073 265 39 54 chr11 40097685 40097994 -110685559 + L1PA11 LINE L1 1068 2707 -4877 15729 178 42 2 chr11 40098049 40101913 -110681640 + L1PA11 LINE L1 3669 7597 -15 4847 163 13 26 chr11 40101950 40102807 -110680746 + HSMAR2 DNA Mariner 356 1201 -101 217 340 21 21 chr11 40102865 40102962 -110680591 + MIR SINE MIR 92 188 -74 22 80 0 0 chr11 40103334 40103384 -110680169 + AT_rich Low_complexity Low_complexity 1 50 0 13534 200 16 3 chr11 40104066 40108049 -110675504 - L1PB1 LINE L1 -2 6149 2114 333 47 0 0 chr11 40109295 40109338 -110674215 + (CA)n Simple_repeat Simple_repeat 2 44 0 2245 257 66 30 chr11 40110394 40111214 -110672339 + L1MD3 LINE L1 7146 7994 -1 295 293 65 16 chr11 40111670 40111793 -110671760 + MLT1K LTR MaLR 398 526 -62 199 111 22 22 chr11 40111974 40112019 -110671534 + (TTA)n Simple_repeat Simple_repeat 1 45 0 22 0 0 0 chr11 40112146 40112168 -110671385 + AT_rich Low_complexity Low_complexity 1 22 0 350 217 116 29 chr11 40112535 40112673 -110670880 - MER3 DNA MER1_type -56 153 4 8209 64 5 8 chr11 40113419 40114494 -110669059 - MER11C LTR ERVK 0 1071 1 236 368 98 15 chr11 40114565 40114698 -110668855 + L2 LINE L2 3125 3268 -4 289 313 81 0 chr11 40114759 40114858 -110668695 - MIR3 SINE MIR -48 160 54 6959 218 27 6 chr11 40115398 40117095 -110666458 + L1PA16 LINE L1 3502 5231 -915 1491 119 26 63 chr11 40117095 40117363 -110666190 + AluSp SINE Alu 44 301 -12 764 167 29 0 chr11 40117363 40117613 -110665940 + GA-rich Low_complexity Low_complexity 1 257 0 264 30 0 0 chr11 40118103 40118136 -110665417 + (GAAA)n Simple_repeat Simple_repeat 4 36 0 186 43 0 0 chr11 40118154 40118177 -110665376 + (TATG)n Simple_repeat Simple_repeat 1 23 0 337 178 29 14 chr11 40118177 40118320 -110665233 + GA-rich Low_complexity Low_complexity 1 145 0 4084 140 51 3 chr11 40118320 40119071 -110664482 + L1PA16 LINE L1 5211 5994 -172 384 252 197 8 chr11 40120317 40120444 -110663109 + MER5A DNA MER1_type 39 189 0 21 36 0 0 chr11 40120932 40120960 -110662593 + AT_rich Low_complexity Low_complexity 1 28 0 36 62 0 0 chr11 40121308 40121372 -110662181 + AT_rich Low_complexity Low_complexity 1 64 0 238 254 51 0 chr11 40122230 40122289 -110661264 + MER63A DNA MER1_type 149 210 0 1667 174 158 13 chr11 40122471 40122845 -110660708 - MSTA LTR MaLR 0 428 1 207 179 0 0 chr11 40124341 40124380 -110659173 + A-rich Low_complexity Low_complexity 2 40 0 225 87 43 22 chr11 40124987 40125033 -110658520 + (TTAAA)n Simple_repeat Simple_repeat 4 50 0 303 318 135 14 chr11 40125074 40125222 -110658331 + MIR SINE MIR 53 218 -44 972 39 0 23 chr11 40125841 40125971 -110657582 - L1PA5 LINE L1 0 6154 6028 1323 171 20 97 chr11 40127054 40127404 -110656149 - MLT1A2 LTR MaLR -48 326 4 186 242 0 0 chr11 40127458 40127491 -110656062 + MIR SINE MIR 36 68 -194 6298 199 156 22 chr11 40127721 40129269 -110654284 - MER52A LTR ERV1 0 1755 1 283 312 0 26 chr11 40130277 40130354 -110653199 + L2 LINE L2 3235 3309 -4 2541 225 54 21 chr11 40130573 40131204 -110652349 + MER82 DNA MER2_type 2 653 0 249 289 24 12 chr11 40132738 40132821 -110650732 + MIR SINE MIR 54 137 -125 189 0 0 0 chr11 40133352 40133373 -110650180 + (A)n Simple_repeat Simple_repeat 1 21 0 2026 93 6 40 chr11 40133995 40134317 -110649236 - AluY SINE Alu 0 311 1 5726 159 56 31 chr11 40134863 40136800 -110646753 + L1MA2 LINE L1 4127 6131 -173 1884 152 39 15 chr11 40136800 40137135 -110646418 - MER61A LTR ERV1 0 343 1 5726 159 56 31 chr11 40137135 40137309 -110646244 + L1MA2 LINE L1 6131 6299 -5 233 29 29 0 chr11 40137754 40137788 -110645765 + (TTTAA)n Simple_repeat Simple_repeat 3 37 0 5308 58 1 4 chr11 40137788 40138454 -110645099 - L1PA7 LINE L1 -12 6142 5477 2792 189 97 11 chr11 40141139 40141790 -110641763 - MER67C LTR ERV1 0 710 4 945 248 72 25 chr11 40142351 40143634 -110639919 - L1MDa LINE L1 -5142 1398 3 210 191 0 0 chr11 40144059 40144106 -110639447 + (CA)n Simple_repeat Simple_repeat 1 47 0 267 192 39 0 chr11 40145345 40145423 -110638130 + (TA)n Simple_repeat Simple_repeat 2 82 0 21 0 0 0 chr11 40145886 40145907 -110637646 + AT_rich Low_complexity Low_complexity 1 21 0 1425 204 47 62 chr11 40146866 40147268 -110636285 - MER57A LTR ERV1 0 403 8 9024 22 0 0 chr11 40148917 40150740 -110632813 + L1PA3 LINE L1 4325 6147 -8 1497 198 7 0 chr11 40151181 40151479 -110632074 - L1PA16 LINE L1 -1 6165 5866 45 102 0 0 chr11 40151980 40152137 -110631416 + AT_rich Low_complexity Low_complexity 1 157 0 428 280 149 36 chr11 40152963 40153131 -110630422 - MIR SINE MIR -72 190 4 223 303 30 0 chr11 40153361 40153460 -110630093 - MIR SINE MIR -57 205 104 763 281 40 9 chr11 40153480 40153708 -110629845 + MLT1G LTR MaLR 356 590 0 21 0 0 0 chr11 40154301 40154322 -110629231 + AT_rich Low_complexity Low_complexity 1 21 0 216 388 30 37 chr11 40155163 40155297 -110628256 - MIR3 SINE MIR -52 156 24 306 277 89 9 chr11 40155509 40155621 -110627932 - MIR SINE MIR -31 231 111 240 235 31 102 chr11 40156045 40156143 -110627410 + MIR SINE MIR 172 262 0 2355 179 2 20 chr11 40156385 40156827 -110626726 - Tigger2a DNA MER2_type 0 434 1 204 67 0 0 chr11 40156838 40156868 -110626685 + (TTC)n Simple_repeat Simple_repeat 3 32 0 1948 126 0 11 chr11 40156868 40157205 -110626348 - AluSq SINE Alu 0 334 1 745 293 159 30 chr11 40157308 40157553 -110626000 - MLT1H LTR MaLR -18 531 319 4234 128 3 5 chr11 40157553 40158187 -110625366 + MER51A LTR ERV1 1 633 -1 745 293 159 30 chr11 40158187 40158374 -110625179 - MLT1H LTR MaLR -230 319 43 198 329 61 12 chr11 40158408 40158490 -110625063 - MIR SINE MIR -113 149 64 212 0 36 0 chr11 40158789 40158817 -110624736 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 367 213 39 150 chr11 40158819 40159026 -110624527 + Charlie4 DNA MER1_type 80 263 -1698 766 151 0 8 chr11 40159033 40159159 -110624394 - FRAM SINE Alu -21 155 31 409 222 44 33 chr11 40159178 40159358 -110624195 + Charlie4 DNA MER1_type 1740 1921 -40 209 327 119 39 chr11 40159471 40159731 -110623822 + L2 LINE L2 2245 2525 -789 233 170 75 19 chr11 40160058 40160111 -110623442 - MLT1B LTR MaLR -132 258 203 1052 215 114 57 chr11 40160115 40160320 -110623233 - MLT1H-int LTR MaLR -41 1330 1099 2115 131 3 0 chr11 40160320 40160626 -110622927 - AluSg SINE Alu -3 307 1 1052 215 114 57 chr11 40160626 40160736 -110622817 - MLT1H-int LTR MaLR -272 1099 997 192 125 0 0 chr11 40161705 40161737 -110621816 + (GAAA)n Simple_repeat Simple_repeat 4 35 0 429 268 38 44 chr11 40162283 40162466 -110621087 - MER117 DNA MER1_type -10 187 6 264 362 141 7 chr11 40162467 40162616 -110620937 + MIR SINE MIR 37 205 -57 2023 148 0 3 chr11 40162989 40163299 -110620254 + AluSg SINE Alu 1 309 -1 27 49 0 0 chr11 40163372 40163413 -110620140 + AT_rich Low_complexity Low_complexity 1 41 0 423 277 104 59 chr11 40164817 40165037 -110618516 + MIR SINE MIR 3 232 -30 427 248 18 37 chr11 40165256 40165365 -110618188 + L2 LINE L2 3207 3313 0 228 35 0 0 chr11 40165391 40165420 -110618133 + (TG)n Simple_repeat Simple_repeat 2 30 0 259 311 98 8 chr11 40166624 40166746 -110616807 + MIR3 SINE MIR 71 203 -5 3327 120 26 4 chr11 40166895 40167395 -110616158 + MER9 LTR ERVK 1 511 0 1579 214 0 22 chr11 40167686 40168004 -110615549 + AluJo SINE Alu 1 311 -1 204 135 0 0 chr11 40168147 40168184 -110615369 + (TTCC)n Simple_repeat Simple_repeat 4 40 0 204 353 29 0 chr11 40168237 40168305 -110615248 + L2 LINE L2 2607 2676 -638 291 28 0 0 chr11 40168442 40168478 -110615075 + (CA)n Simple_repeat Simple_repeat 2 37 0 409 303 86 17 chr11 40168782 40168957 -110614596 + MER63A DNA MER1_type 5 191 -19 262 322 18 28 chr11 40169273 40169395 -110614158 - MIR SINE MIR -67 141 30 1975 168 80 5 chr11 40169714 40170089 -110613464 + MER57A LTR ERV1 1 403 0 189 121 0 0 chr11 40170431 40170464 -110613089 + (GAAAA)n Simple_repeat Simple_repeat 2 34 0 268 131 16 16 chr11 40170909 40170970 -110612583 + GA-rich Low_complexity Low_complexity 3 63 0 1650 185 16 41 chr11 40171012 40171379 -110612174 - MER4D LTR ERV1 -2 901 544 351 159 35 29 chr11 40171373 40171485 -110612068 - MER4E LTR ERV1 -588 284 64 * 1003 165 151 33 chr11 40171481 40171696 -110611857 - MER49 LTR ERV1 -640 283 63 1840 159 3 25 chr11 40171696 40172010 -110611543 + AluSx SINE Alu 1 307 -5 1003 165 151 33 chr11 40172010 40172082 -110611471 - MER49 LTR ERV1 -860 63 1 652 298 19 66 chr11 40172144 40172463 -110611090 + MER77 LTR ERV1 54 357 -248 2008 209 32 7 chr11 40172465 40172876 -110610677 - MSTB LTR MaLR -5 421 1 308 242 40 20 chr11 40172937 40173036 -110610517 + MER77 LTR ERV1 466 566 -39 1982 218 37 88 chr11 40173753 40174431 -110609122 - LTR19C LTR ERV1 0 779 137 260 191 56 56 chr11 40174401 40174490 -110609063 - MER61E LTR ERV1 -480 89 1 * 22 0 0 0 chr11 40175204 40175226 -110608327 + AT_rich Low_complexity Low_complexity 1 22 0 5978 130 22 17 chr11 40175275 40176239 -110607314 + LTR5 LTR ERVK 1 969 0 1822 133 31 3 chr11 40177148 40177434 -110606119 + AluSx SINE Alu 1 294 -18 259 318 77 46 chr11 40177794 40177989 -110605564 - MIR SINE MIR -1 261 61 317 265 12 48 chr11 40178102 40178185 -110605368 - L2 LINE L2 0 3272 3193 348 90 0 0 chr11 40178191 40178246 -110605307 + Alu SINE Alu 2 47 -255 274 327 37 31 chr11 40178302 40178464 -110605089 - MIR SINE MIR -4 258 96 183 308 0 0 chr11 40178536 40178575 -110604978 - MIR SINE MIR -208 54 16 22 0 0 0 chr11 40180339 40180361 -110603192 + AT_rich Low_complexity Low_complexity 1 22 0 237 316 63 0 chr11 40180599 40180678 -110602875 - L2 LINE L2 -4 3268 3185 200 220 0 17 chr11 40180928 40180987 -110602566 + T-rich Low_complexity Low_complexity 3 60 0 1716 110 78 41 chr11 40180989 40181308 -110602245 - L1MA5A LINE L1 -4 6293 5963 2238 62 0 28 chr11 40182325 40182663 -110600890 + AluY SINE Alu 1 330 0 442 304 99 30 chr11 40182995 40183196 -110600357 - HAL1 LINE L1 -1033 1474 1260 186 43 0 0 chr11 40183475 40183498 -110600055 + (TG)n Simple_repeat Simple_repeat 2 24 0 568 235 7 7 chr11 40183799 40183952 -110599601 - L1MA5 LINE L1 0 6300 6148 392 272 29 10 chr11 40184444 40184547 -110599006 + L2 LINE L2 3199 3303 -10 287 19 77 0 chr11 40184885 40184937 -110598616 + (TA)n Simple_repeat Simple_repeat 1 56 0 804 198 68 19 chr11 40186405 40186567 -110596986 - MER8 DNA MER2_type 0 239 70 314 239 0 15 chr11 40186834 40186901 -110596652 - MER8 DNA MER2_type -173 66 1 289 340 57 67 chr11 40186950 40187247 -110596306 + L2 LINE L2 203 496 -2818 1810 201 17 8 chr11 40187380 40187739 -110595814 + MLT1A1 LTR MaLR 3 364 -1 2711 165 23 4 chr11 40187901 40188423 -110595130 + L1MA8 LINE L1 5759 6290 -1 954 257 192 21 chr11 40188423 40188804 -110594749 - LTR40b LTR ERVL -9 453 8 2258 271 63 17 chr11 40189133 40190504 -110593049 - L1MEc LINE L1 -2979 3236 1850 2117 214 62 45 chr11 40190515 40191140 -110592413 - L1MC3 LINE L1 -17 7768 7133 1086 282 115 27 chr11 40191208 40192085 -110591468 - L1MEc LINE L1 -4627 1769 816 510 341 25 40 chr11 40192115 40192438 -110591115 - L1MEc LINE L1 -5936 460 143 22 70 0 0 chr11 40192519 40192562 -110590991 + AT_rich Low_complexity Low_complexity 1 43 0 2000 131 3 13 chr11 40192607 40192920 -110590633 - AluSx SINE Alu -1 311 2 24 32 0 0 chr11 40193377 40193408 -110590145 + AT_rich Low_complexity Low_complexity 1 31 0 383 260 10 19 chr11 40193572 40193676 -110589877 - MIR SINE MIR -86 176 74 314 339 0 36 chr11 40193890 40194002 -110589551 - MIR3 SINE MIR -54 154 47 1618 187 82 0 chr11 40194288 40194604 -110588949 - L1MC1 LINE L1 -6 6327 5986 2129 106 7 0 chr11 40194650 40194942 -110588611 + AluSq SINE Alu 1 294 -19 323 268 154 8 chr11 40195968 40196091 -110587462 - MIR SINE MIR -3 259 119 525 285 60 4 chr11 40196110 40196345 -110587208 + L1M4 LINE L1 1138 1385 -5157 321 329 13 0 chr11 40196345 40196500 -110587053 - L1MEc LINE L1 -3805 3152 2996 1026 180 15 5 chr11 40196521 40196727 -110586826 - L1MA6 LINE L1 0 6300 6093 290 265 10 0 chr11 40196770 40196868 -110586685 - L1MEc LINE L1 -4100 3038 2940 999 87 16 0 chr11 40197062 40197189 -110586364 - AluSc SINE Alu -180 129 1 418 122 11 11 chr11 40197470 40197560 -110585993 + (TA)n Simple_repeat Simple_repeat 2 91 0 720 300 46 40 chr11 40197708 40198228 -110585325 - L1MEc LINE L1 -4595 2543 2021 263 297 112 48 chr11 40198278 40198527 -110585026 - L1MEc LINE L1 -6583 276 12 2077 120 7 3 chr11 40199067 40199375 -110584178 + AluSc SINE Alu 1 309 0 34 0 0 0 chr11 40200037 40200071 -110583482 + AT_rich Low_complexity Low_complexity 1 34 0 202 242 16 0 chr11 40200304 40200366 -110583187 + (TA)n Simple_repeat Simple_repeat 2 64 0 1411 219 48 11 chr11 40200671 40201023 -110582530 - MLT1A1 LTR MaLR 0 365 1 295 345 153 27 chr11 40201045 40201268 -110582285 - MIR SINE MIR 0 262 12 2176 100 6 13 chr11 40202116 40202427 -110581126 + AluSc SINE Alu 1 309 0 2485 137 0 11 chr11 40203438 40203817 -110579736 - THE1C LTR MaLR 0 375 1 21 0 0 0 chr11 40205635 40205656 -110577897 + AT_rich Low_complexity Low_complexity 1 21 0 440 312 174 36 chr11 40206220 40206473 -110577080 + MER69 DNA AcHobo 1 288 -938 232 233 0 0 chr11 40206489 40206532 -110577021 + (TG)n Simple_repeat Simple_repeat 2 44 0 378 238 141 13 chr11 40206667 40206894 -110576659 + MER69 DNA AcHobo 2163 2418 -108 29 28 0 0 chr11 40207414 40207450 -110576103 + AT_rich Low_complexity Low_complexity 1 36 0 5246 204 66 31 chr11 40207481 40207782 -110575771 - THE1C-int LTR MaLR -442 1209 920 1825 163 10 47 chr11 40207782 40208169 -110575384 - THE1C LTR MaLR -2 373 1 5246 204 66 31 chr11 40208169 40208813 -110574740 - THE1C-int LTR MaLR -731 920 213 1917 153 137 16 chr11 40208813 40209193 -110574360 + MSTA LTR MaLR 3 428 0 5246 204 66 31 chr11 40209193 40209412 -110574141 - THE1C-int LTR MaLR -1438 213 3 1760 154 162 11 chr11 40209414 40209785 -110573768 - MSTA LTR MaLR 0 428 2 234 330 100 10 chr11 40210197 40210297 -110573256 - MIR3 SINE MIR -25 183 75 1619 210 79 51 chr11 40212660 40213151 -110570402 + MLT1D LTR MaLR 1 505 0 1558 198 40 98 chr11 40213455 40213523 -110570030 - MLT1C LTR MaLR 0 467 397 2103 124 51 23 chr11 40213523 40213877 -110569676 + THE1B LTR MaLR 1 364 0 1558 198 40 98 chr11 40213877 40214287 -110569266 - MLT1C LTR MaLR -70 397 17 605 259 17 97 chr11 40214439 40214729 -110568824 + MER93b LTR ERV1 20 286 -87 504 310 38 5 chr11 40214894 40215109 -110568444 - MLT2E LTR ERVL -402 226 1 643 220 19 16 chr11 40215426 40215478 -110568075 - L1MA8 LINE L1 -26 6274 6224 204 40 0 0 chr11 40215478 40215503 -110568050 + (CA)n Simple_repeat Simple_repeat 2 26 0 643 220 19 16 chr11 40215503 40215642 -110567911 - L1MA8 LINE L1 -76 6224 6077 201 259 17 17 chr11 40216061 40216119 -110567434 + CT-rich Low_complexity Low_complexity 3 60 0 2215 187 31 39 chr11 40216163 40216676 -110566877 + LTR22 LTR ERVK 1 509 0 7425 35 0 0 chr11 40216821 40217975 -110565578 - L1PA3 LINE L1 0 6155 5043 329 248 124 13 chr11 40217953 40218106 -110565447 - L1MB8 LINE L1 -68 6110 5941 * 2183 206 63 12 chr11 40218344 40218854 -110564699 + L1MA8 LINE L1 5728 6263 -28 21 36 0 0 chr11 40219446 40219474 -110564079 + AT_rich Low_complexity Low_complexity 1 28 0 304 318 150 6 chr11 40220008 40220181 -110563372 + L3b LINE CR1 1109 1306 -277 212 0 36 0 chr11 40221636 40221664 -110561889 + (TTTTTG)n Simple_repeat Simple_repeat 5 33 0 580 196 0 23 chr11 40221678 40221811 -110561742 + L1PB2 LINE L1 6019 6148 -3 536 246 35 0 chr11 40221946 40222060 -110561493 + MER5A DNA MER1_type 12 129 -60 2791 128 129 27 chr11 40222060 40222617 -110560936 - LTR18B LTR ERVL 0 614 1 3403 177 6 0 chr11 40222776 40223318 -110560235 - HERVL18 LTR ERVL -2556 3491 2947 1943 209 5 29 chr11 40223309 40223687 -110559866 - HERVL18 LTR ERVL -2959 3088 2720 * 1213 187 23 18 chr11 40223663 40223963 -110559590 - HERVL18 LTR ERVL -3570 2477 2119 * 1438 201 47 21 chr11 40224064 40224496 -110559057 - HERVL18 LTR ERVL -5381 666 19 3064 134 53 36 chr11 40224517 40225121 -110558432 - LTR18B LTR ERVL 0 614 1 362 200 0 0 chr11 40225121 40225186 -110558367 + MER5A DNA MER1_type 125 189 0 183 348 57 69 chr11 40226148 40226274 -110557279 - L2 LINE L2 -140 3173 3050 461 328 16 0 chr11 40226274 40226457 -110557096 - MER5A DNA MER1_type -3 186 1 183 348 57 69 chr11 40226457 40226577 -110556976 - L2 LINE L2 -263 3050 2930 255 305 124 33 chr11 40226652 40226862 -110556691 - L2 LINE L2 -448 2866 2638 534 253 58 86 chr11 40227126 40227383 -110556170 + MIR SINE MIR 12 261 -1 213 295 0 0 chr11 40227807 40227868 -110555685 + (TATATG)n Simple_repeat Simple_repeat 5 65 0 2496 188 8 23 chr11 40228631 40229116 -110554437 - MER66B LTR ERV1 0 486 9 889 263 76 113 chr11 40231706 40232300 -110551253 + MER21B LTR ERV1 22 593 -270 1272 255 48 101 chr11 40232484 40233048 -110550505 + MLT1F LTR MaLR 1 534 -8 926 343 119 48 chr11 40233155 40233373 -110550180 + L2 LINE L2 1927 2128 -1185 1123 203 127 41 chr11 40233373 40233616 -110549937 + MER2 DNA MER2_type 2 280 -64 234 0 0 0 chr11 40233616 40233642 -110549911 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1123 203 127 41 chr11 40233642 40233714 -110549839 + MER2 DNA MER2_type 280 344 0 926 343 119 48 chr11 40233714 40234187 -110549366 + L2 LINE L2 2128 2566 -747 738 165 32 6 chr11 40234187 40234345 -110549208 - L1MA8 LINE L1 -5 6286 6125 926 343 119 48 chr11 40234345 40234779 -110548774 + L2 LINE L2 2566 3114 -199 22 56 0 0 chr11 40234862 40234898 -110548655 + AT_rich Low_complexity Low_complexity 1 36 0 244 229 0 0 chr11 40234948 40234996 -110548557 - MIR SINE MIR -144 118 71 1908 177 61 54 chr11 40235736 40236375 -110547178 + MER39 LTR ERV1 1 707 0 23 0 0 0 chr11 40237160 40237183 -110546370 + AT_rich Low_complexity Low_complexity 1 23 0 2370 153 41 2 chr11 40237341 40237753 -110545800 - MSTA LTR MaLR 0 428 1 1719 206 20 43 chr11 40237986 40238379 -110545174 - MLT1B LTR MaLR -6 384 1 847 194 13 129 chr11 40239778 40240088 -110543465 - L1MC5 LINE L1 -1006 6955 6682 191 219 301 14 chr11 40240557 40240630 -110542923 + MIR3 SINE MIR 12 105 -103 422 160 8 48 chr11 40240866 40240991 -110542562 + GA-rich Low_complexity Low_complexity 1 120 0 301 143 0 20 chr11 40241598 40241647 -110541906 + MIR3 SINE MIR 148 195 -13 381 144 38 30 chr11 40241710 40241842 -110541711 + (TA)n Simple_repeat Simple_repeat 1 133 0 284 281 24 84 chr11 40243987 40244154 -110539399 - L2 LINE L2 -15 3298 3142 21 0 0 0 chr11 40244672 40244693 -110538860 + AT_rich Low_complexity Low_complexity 1 21 0 25 51 0 0 chr11 40244744 40244783 -110538770 + AT_rich Low_complexity Low_complexity 1 39 0 1259 235 35 25 chr11 40245063 40245378 -110538175 - MLT1E LTR MaLR 0 593 276 584 0 28 0 chr11 40245435 40245506 -110538047 + (CATAA)n Simple_repeat Simple_repeat 3 75 0 21 0 0 0 chr11 40246178 40246199 -110537354 + AT_rich Low_complexity Low_complexity 1 21 0 22 72 0 36 chr11 40246311 40246394 -110537159 + AT_rich Low_complexity Low_complexity 1 80 0 1989 116 10 0 chr11 40246494 40246786 -110536767 + AluY SINE Alu 17 311 0 3280 197 30 79 chr11 40246907 40247925 -110535628 + LTR5 LTR ERVK 1 969 0 365 375 69 30 chr11 40247939 40248302 -110535251 - L2 LINE L2 0 3313 2937 322 345 35 6 chr11 40248622 40248793 -110534760 + MLT1L LTR MaLR 98 273 -342 321 315 0 0 chr11 40249183 40249275 -110534278 - MIR SINE MIR -13 249 158 392 296 142 22 chr11 40249364 40249590 -110533963 + MLT1J1 LTR MaLR 67 319 -127 214 207 0 86 chr11 40251409 40251467 -110532086 - MER5B DNA MER1_type -125 53 1 328 298 99 20 chr11 40251477 40251628 -110531925 - MIR SINE MIR -71 191 29 336 309 27 27 chr11 40252454 40252603 -110530950 + L1ME LINE L1 5433 5581 -540 303 28 0 0 chr11 40252638 40252674 -110530879 + (TTTTA)n Simple_repeat Simple_repeat 1 36 0 5090 105 1 7 chr11 40252674 40253410 -110530143 - L1PA8 LINE L1 -24 6148 5417 2267 75 23 3 chr11 40253422 40253729 -110529824 - L1PA7 LINE L1 -5 6149 5837 357 283 8 0 chr11 40253810 40253930 -110529623 + (TA)n Simple_repeat Simple_repeat 1 121 0 198 220 0 0 chr11 40253957 40254016 -110529537 + (TA)n Simple_repeat Simple_repeat 2 60 0 327 157 25 25 chr11 40254079 40254200 -110529353 + (TA)n Simple_repeat Simple_repeat 1 121 0 23 0 0 0 chr11 40254485 40254508 -110529045 + AT_rich Low_complexity Low_complexity 1 23 0 239 371 0 0 chr11 40254613 40254683 -110528870 - MIR SINE MIR -102 106 37 2647 32 3 0 chr11 40256848 40257158 -110526395 + AluY SINE Alu 1 311 0 11576 243 28 17 chr11 40257435 40257813 -110525740 - L1PB4 LINE L1 0 6859 6487 270 0 0 0 chr11 40257813 40257843 -110525710 + (CA)n Simple_repeat Simple_repeat 2 31 0 11576 243 28 17 chr11 40257843 40262545 -110521008 - L1PB4 LINE L1 -372 6487 1705 7332 95 32 3 chr11 40362546 40363694 -110419859 - L1P LINE L1 -1531 4615 3435 21 36 0 0 chr11 40363812 40363840 -110419713 + AT_rich Low_complexity Low_complexity 1 28 0 309 250 9 19 chr11 40363913 40364021 -110419532 + (TA)n Simple_repeat Simple_repeat 2 108 0 212 247 24 35 chr11 40364214 40364299 -110419254 + (TATATG)n Simple_repeat Simple_repeat 1 84 0 371 184 40 17 chr11 40364300 40364474 -110419079 + (TA)n Simple_repeat Simple_repeat 2 179 0 21 71 0 0 chr11 40364521 40364563 -110418990 + AT_rich Low_complexity Low_complexity 1 42 0 282 294 59 50 chr11 40365471 40365956 -110417597 - L1ME LINE L1 -635 5529 5041 276 265 20 10 chr11 40366333 40366435 -110417118 - LTR1 LTR ERV1 -1 784 682 289 293 40 0 chr11 40366619 40366718 -110416835 + MER115 DNA AcHobo 590 692 -1 1435 84 0 0 chr11 40367697 40367888 -110415665 - LTR17 LTR ERV1 -589 191 1 3156 175 100 16 chr11 40367976 40368683 -110414870 + LTR1B LTR ERV1 1 782 -3 275 338 19 6 chr11 40369021 40369178 -110414375 + L1 LINE L1 4052 4210 -1936 230 20 41 41 chr11 40370499 40370548 -110413005 + (TTA)n Simple_repeat Simple_repeat 3 51 0 3029 74 2 5 chr11 40371802 40372205 -110411348 + L1PA8 LINE L1 5763 6164 -8 239 297 76 0 chr11 40372430 40372548 -110411005 + L1M4 LINE L1 3317 3443 -2703 323 301 79 64 chr11 40373486 40373891 -110409662 + L1ME LINE L1 541 951 -5119 469 263 35 91 chr11 40374995 40375227 -110408326 - MIR SINE MIR 0 262 44 1994 204 34 9 chr11 40375876 40376317 -110407236 + LTR47A LTR ERVL 1 452 0 1855 87 0 43 chr11 40376544 40376820 -110406733 + AluY SINE Alu 45 308 -3 220 307 89 10 chr11 40477145 40477246 -110306307 - L2 LINE L2 -1279 2035 1927 351 330 80 24 chr11 40477515 40477803 -110305750 + L1M4 LINE L1 4488 4791 -1355 24 67 0 0 chr11 40478109 40478154 -110305399 + AT_rich Low_complexity Low_complexity 1 45 0 28 48 0 0 chr11 40478325 40478367 -110305186 + AT_rich Low_complexity Low_complexity 1 42 0 977 170 25 0 chr11 40478747 40478947 -110304606 - L1MA4 LINE L1 -9 6291 6087 38 22 0 0 chr11 40479077 40479122 -110304431 + AT_rich Low_complexity Low_complexity 1 45 0 235 167 19 0 chr11 40479168 40479222 -110304331 + (TTTA)n Simple_repeat Simple_repeat 4 58 0 * 444 144 50 56 chr11 40479195 40479375 -110304178 + (TA)n Simple_repeat Simple_repeat 1 179 0 483 270 29 59 chr11 40479389 40479593 -110303960 + LTR16A LTR ERVL 161 358 -92 345 24 0 0 chr11 40479727 40479769 -110303784 + (TG)n Simple_repeat Simple_repeat 2 43 0 2173 203 20 99 chr11 40480322 40481012 -110302541 + L1MC2 LINE L1 5544 6179 -165 283 202 24 0 chr11 40481398 40481482 -110302071 + (TA)n Simple_repeat Simple_repeat 2 87 0 251 330 0 18 chr11 40481685 40481797 -110301756 + HAL1b LINE L1 380 489 -859 4300 181 27 11 chr11 40481924 40483273 -110300280 + L1P4 LINE L1 4402 5775 -391 2636 89 96 5 chr11 40483778 40484183 -110299370 - LTR7 LTR ERV1 -8 442 1 595 242 0 23 chr11 40484344 40484472 -110299081 - FLAM_A SINE Alu -8 125 1 1932 134 29 13 chr11 40485355 40485661 -110297892 + AluSx SINE Alu 1 311 -1 185 62 0 31 chr11 40487622 40487654 -110295899 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 34 42 0 0 chr11 40488171 40488219 -110295334 + AT_rich Low_complexity Low_complexity 1 48 0 315 0 0 0 chr11 40488392 40488427 -110295126 + (TG)n Simple_repeat Simple_repeat 2 36 0 1172 253 108 50 chr11 40488466 40489028 -110294525 - MLT1G1 LTR MaLR 0 595 1 26 30 0 0 chr11 40489335 40489368 -110294185 + AT_rich Low_complexity Low_complexity 1 33 0 1154 86 0 0 chr11 40489736 40489887 -110293666 + AluSg/x SINE Alu 157 307 -5 517 347 31 5 chr11 40489918 40490111 -110293442 + MIR SINE MIR 51 248 -14 797 226 30 103 chr11 40490415 40490457 -110293096 - MLT2C1 LTR ERVL -20 377 333 378 0 0 0 chr11 40490457 40490499 -110293054 + (CA)n Simple_repeat Simple_repeat 2 43 0 797 226 30 103 chr11 40490499 40490863 -110292690 - MLT2C1 LTR ERVL -64 333 1 269 333 11 0 chr11 40490877 40490970 -110292583 + L2 LINE L2 3219 3312 -1 285 256 16 70 chr11 40492197 40492326 -110291227 + MER103 DNA DNA 12 133 -33 191 102 34 34 chr11 40492670 40492729 -110290824 + (TA)n Simple_repeat Simple_repeat 1 59 0 420 171 24 29 chr11 40492744 40492914 -110290639 + (TA)n Simple_repeat Simple_repeat 1 169 0 473 295 97 87 chr11 40493826 40494359 -110289194 + HAL1 LINE L1 843 1386 -1121 207 88 0 0 chr11 40494359 40494393 -110289160 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 473 295 97 87 chr11 40494393 40494582 -110288971 + HAL1 LINE L1 1386 1572 -935 270 357 24 8 chr11 40496077 40496203 -110287350 - L2 LINE L2 0 3313 3186 3298 134 7 31 chr11 40496356 40496895 -110286658 + MER1A DNA MER1_type 1 526 -1 321 89 0 0 chr11 40497035 40497080 -110286473 + (TG)n Simple_repeat Simple_repeat 1 45 0 207 349 0 12 chr11 40497169 40497252 -110286301 + MIR SINE MIR 75 156 -106 568 318 51 0 chr11 40497628 40497842 -110285711 + MLT1J2 LTR MaLR 22 246 -204 189 154 0 0 chr11 40498066 40498105 -110285448 + (CAGAGA)n Simple_repeat Simple_repeat 4 42 0 697 77 0 94 chr11 40498343 40498460 -110285093 - AluSc SINE Alu -131 178 73 977 65 0 0 chr11 40498460 40498584 -110284969 + AluY SINE Alu 181 304 -7 6469 162 46 35 chr11 40498679 40498907 -110284646 - HSMAR2 DNA Mariner -4 1298 1074 1471 106 53 46 chr11 40498907 40499190 -110284363 - L1MA2 LINE L1 0 6304 6020 6469 162 46 35 chr11 40499190 40500244 -110283309 - HSMAR2 DNA Mariner -228 1074 2 29 28 0 0 chr11 40500884 40500920 -110282633 + AT_rich Low_complexity Low_complexity 1 36 0 993 74 0 0 chr11 40501305 40501440 -110282113 + (GAAAA)n Simple_repeat Simple_repeat 2 136 0 208 333 0 73 chr11 40501829 40501952 -110281601 + L2 LINE L2 2898 3011 -261 465 353 40 0 chr11 40502111 40502284 -110281269 - MIR SINE MIR -14 248 69 182 423 72 0 chr11 40502346 40502457 -110281096 + L2 LINE L2 3154 3272 0 1227 175 66 83 chr11 40502580 40502928 -110280625 + MSTB1 LTR MaLR 83 424 -8 735 271 28 40 chr11 40502932 40503179 -110280374 - MER110 LTR ERV1 -189 302 59 388 264 74 25 chr11 40505154 40505315 -110278238 + MIR SINE MIR 3 176 -65 524 333 38 5 chr11 40506034 40506244 -110277309 - MIR SINE MIR -12 250 34 498 279 32 64 chr11 40506250 40506530 -110277023 - LTR37B LTR ERV1 0 468 198 24 0 0 0 chr11 40506577 40506601 -110276952 + AT_rich Low_complexity Low_complexity 1 24 0 568 234 198 25 chr11 40506786 40507055 -110276498 - MER52A LTR ERV1 -137 894 283 738 244 12 6 chr11 40507097 40507261 -110276292 - LTR28 LTR ERV1 -855 165 1 203 273 0 0 chr11 40507336 40507391 -110276162 - MIR SINE MIR -111 151 97 235 203 20 61 chr11 40507503 40507651 -110275902 + (TTATA)n Simple_repeat Simple_repeat 4 145 0 229 363 62 26 chr11 40507806 40507919 -110275634 - L2 LINE L2 -8 3264 3148 569 335 36 22 chr11 40508457 40508732 -110274821 + LTR16B LTR ERVL 134 412 -52 1377 124 9 0 chr11 40510674 40510892 -110272661 - L1PA13 LINE L1 -6 6157 5938 366 292 62 23 chr11 40511035 40511292 -110272261 - L1MC4a LINE L1 -1862 5946 5680 1362 202 31 87 chr11 40512235 40513588 -110269965 + L1MD3 LINE L1 5385 5651 -533 2455 147 28 14 chr11 40512741 40513163 -110270390 - MSTA LTR MaLR 0 428 1 1007 184 34 59 chr11 40513163 40513229 -110270324 + L1MB7 LINE L1 5827 5850 -334 2135 135 0 0 chr11 40513229 40513541 -110270012 + AluSx SINE Alu 1 312 0 1007 184 34 59 chr11 40513541 40513625 -110269928 + L1MB7 LINE L1 5850 5935 -249 451 148 12 0 chr11 40513643 40513724 -110269829 + L1MB7 LINE L1 6084 6165 -19 285 258 0 62 chr11 40513744 40513841 -110269712 - L2 LINE L2 -957 2357 2267 314 315 91 14 chr11 40514049 40514192 -110269361 - MIR SINE MIR -42 220 67 416 290 97 14 chr11 40514250 40514395 -110269158 + MER5B DNA MER1_type 1 157 -21 367 320 160 13 chr11 40515619 40515775 -110267778 + MER5A DNA MER1_type 10 188 -1 189 355 136 7 chr11 40516391 40516546 -110267007 + MIR3 SINE MIR 30 204 -4 218 222 0 56 chr11 40517829 40517883 -110265670 - MIR SINE MIR -89 173 123 27 0 0 0 chr11 40518304 40518331 -110265222 + AT_rich Low_complexity Low_complexity 1 27 0 322 247 68 49 chr11 40518635 40518917 -110264636 - L1MC5 LINE L1 -188 7854 7455 2581 63 209 165 chr11 40518919 40519518 -110264035 + LTR12 LTR ERV1 90 714 0 1016 47 0 0 chr11 40519621 40519748 -110263805 - L1PA5 LINE L1 -174 5980 5854 1213 48 0 42 chr11 40519748 40519912 -110263641 + L1PA5 LINE L1 5989 6146 -8 647 261 55 68 chr11 40520479 40521027 -110262526 - L1MC4 LINE L1 -394 7442 6962 199 373 46 7 chr11 40521083 40521203 -110262350 + MIR SINE MIR 16 137 -71 483 287 135 22 chr11 40522512 40522742 -110260811 + MIR SINE MIR 3 258 -4 207 0 0 0 chr11 40523817 40523840 -110259713 + (CA)n Simple_repeat Simple_repeat 2 24 0 220 313 0 15 chr11 40525012 40525079 -110258474 - L2 LINE L2 -193 3079 3014 1769 237 114 16 chr11 40526699 40527812 -110255741 - L1MCa LINE L1 -3317 3109 1756 1548 137 0 65 chr11 40527812 40528115 -110255438 - AluSx SINE Alu 0 312 36 1769 237 114 16 chr11 40528115 40528315 -110255238 - L1MCa LINE L1 -4670 1756 1577 882 164 52 19 chr11 40528680 40528893 -110254660 + L1MA7 LINE L1 6072 6291 0 23 78 0 0 chr11 40528893 40528944 -110254609 + AT_rich Low_complexity Low_complexity 1 51 0 4253 33 0 0 chr11 40529204 40529725 -110253828 + L1P LINE L1 4780 5300 -846 532 342 43 18 chr11 40529867 40530142 -110253411 - HERV16 LTR ERVL -2083 2913 2658 938 311 62 42 chr11 40530355 40530875 -110252678 - HERV16 LTR ERVL -2623 2373 1844 1081 135 39 22 chr11 40530979 40531208 -110252345 + L1M4c LINE L1 2101 2333 -4051 478 220 9 0 chr11 40531210 40531319 -110252234 + L1M4c LINE L1 3783 3892 -2490 1449 189 49 40 chr11 40531320 40531690 -110251863 - THE1C LTR MaLR 0 375 3 1923 153 3 6 chr11 40531692 40532012 -110251541 - THE1C-int LTR MaLR 0 1651 1333 29 0 0 0 chr11 40532698 40532727 -110250826 + AT_rich Low_complexity Low_complexity 1 29 0 228 100 0 0 chr11 40533395 40533425 -110250128 + MLT2D LTR ERVL 385 414 0 1812 171 0 23 chr11 40533479 40533783 -110249770 + AluJb SINE Alu 1 297 -15 212 281 0 0 chr11 40533796 40533853 -110249700 + (TA)n Simple_repeat Simple_repeat 2 58 0 1775 166 27 14 chr11 40533938 40534234 -110249319 - AluSx SINE Alu -12 300 1 347 119 102 0 chr11 40534626 40534685 -110248868 - THE1C LTR MaLR -310 65 1 1808 109 15 0 chr11 40534685 40534952 -110248601 - THE1C-int LTR MaLR 0 1580 1310 8449 103 17 4 chr11 40534957 40536129 -110247424 - HERVL LTR ERVL -2000 3654 2468 11890 102 17 6 chr11 40536229 40537968 -110245585 - HERV9 LTR ERV1 -6082 2317 559 2243 267 73 17 chr11 40538166 40539282 -110244271 - L1M4 LINE L1 -1062 5084 3906 1582 186 30 0 chr11 40539382 40539678 -110243875 + L1MC1 LINE L1 6001 6305 -28 22 56 0 0 chr11 40539988 40540024 -110243529 + AT_rich Low_complexity Low_complexity 1 36 0 312 332 77 33 chr11 40540388 40540725 -110242828 + L1M4 LINE L1 3322 3673 -2473 1687 174 8 110 chr11 40540734 40541108 -110242445 + Tigger3(Golem) DNA MER2_type 9 3024 -5 391 274 18 6 chr11 40541108 40541272 -110242281 + (TA)n Simple_repeat Simple_repeat 1 166 0 299 276 0 32 chr11 40541416 40541539 -110242014 + L1M4 LINE L1 4531 4649 -1497 4257 156 52 67 chr11 40542153 40542377 -110241176 - Tigger2 DNA MER2_type -6 2712 2486 1874 157 3 3 chr11 40542377 40542664 -110240889 - AluSx SINE Alu -25 287 1 4257 156 52 67 chr11 40542664 40543338 -110240215 - Tigger2 DNA MER2_type -232 2486 1827 390 191 36 73 chr11 40543443 40543553 -110240000 + LTR38B LTR ERV1 8 113 -497 1121 232 14 7 chr11 40543576 40543860 -110239693 + L1 LINE L1 4154 4439 -1707 242 324 198 28 chr11 40545151 40545333 -110238220 - L3 LINE CR1 -71 1506 1294 723 143 14 43 chr11 40545379 40545519 -110238034 - THE1C LTR MaLR 0 375 240 6927 124 6 4 chr11 40545631 40546638 -110236915 + THE1C-int LTR MaLR 572 1580 0 2104 149 16 19 chr11 40546638 40547014 -110236539 + THE1C LTR MaLR 1 375 0 1230 196 26 22 chr11 40547016 40547286 -110236267 + AluJo SINE Alu 22 292 -20 1464 197 7 0 chr11 40547286 40547575 -110235978 - L1PA15-16 LINE L1 -4309 2540 2250 3425 174 29 18 chr11 40547678 40548885 -110234668 + L1P5 LINE L1 4551 5769 -382 347 269 34 50 chr11 40549056 40549175 -110234378 - LTR16A LTR ERVL -277 173 57 5264 161 25 38 chr11 40550318 40551290 -110232263 + L1PA15-16 LINE L1 979 1937 -4912 1494 165 11 4 chr11 40551290 40551557 -110231996 - AluSp SINE Alu -16 297 29 211 169 68 51 chr11 40551816 40551875 -110231678 + L2 LINE L2 2440 2499 -815 252 59 0 0 chr11 40552368 40552402 -110231151 + (TG)n Simple_repeat Simple_repeat 2 35 0 271 283 106 9 chr11 40553018 40553131 -110230422 - MIR SINE MIR -10 252 129 456 159 0 0 chr11 40553398 40553467 -110230086 + Tigger2 DNA MER2_type 1 69 -2649 * 2165 201 20 11 chr11 40553451 40553899 -110229654 + Tigger2 DNA MER2_type 2267 2718 0 5539 221 25 28 chr11 40554748 40556216 -110227337 - L1 LINE L1 -1173 4973 3510 1150 236 131 73 chr11 40556348 40557183 -110226370 + L1ME2 LINE L1 5264 6152 -12 426 252 19 0 chr11 40557396 40557499 -110226054 + L1MD2 LINE L1 6028 6132 -227 2806 125 68 177 chr11 40557602 40558045 -110225508 + LTR12 LTR ERV1 37 107 -607 2581 51 0 3 chr11 40558045 40558357 -110225196 - AluY SINE Alu 0 311 1 2806 125 68 177 chr11 40558357 40558906 -110224647 + LTR12 LTR ERV1 107 714 0 697 168 20 13 chr11 40558906 40559038 -110224515 + HERV9 LTR ERV1 40 172 -8227 379 228 130 118 chr11 40559740 40559882 -110223671 + LTR16A1 LTR ERVL 1 140 -317 856 148 26 26 chr11 40559882 40560071 -110223482 + MER53 DNA DNA 1 189 0 379 228 130 118 chr11 40560071 40560266 -110223287 + LTR16A1 LTR ERVL 140 342 -115 797 132 0 0 chr11 40560266 40560387 -110223166 - MLT2B1 LTR ERVL 0 520 400 415 200 70 43 chr11 40560374 40560489 -110223064 + LTR16A1 LTR ERVL 340 457 0 * 329 288 52 44 chr11 40560489 40560718 -110222835 + HERV16 LTR ERVL 1 231 -4765 24 0 0 0 chr11 40561780 40561804 -110221749 + AT_rich Low_complexity Low_complexity 1 24 0 650 333 122 23 chr11 40562326 40562671 -110220882 - L3 LINE CR1 -12 1565 1187 704 223 59 9 chr11 40564162 40564382 -110219171 - L1M4 LINE L1 -2263 3883 3653 1765 169 52 27 chr11 40564382 40564748 -110218805 + THE1C LTR MaLR 1 375 0 4462 234 38 4 chr11 40564751 40565783 -110217770 + THE1C-int LTR MaLR 5 1071 -580 359 80 0 0 chr11 40565965 40566015 -110217538 + MLT2A2 LTR ERVL 404 453 0 3912 112 50 10 chr11 40566560 40567179 -110216374 + LTR9B LTR ERV1 1 644 0 22 56 0 0 chr11 40567444 40567480 -110216073 + AT_rich Low_complexity Low_complexity 1 36 0 367 153 102 0 chr11 40567868 40567966 -110215587 + L1MD3 LINE L1 6992 7099 -896 325 256 47 0 chr11 40568027 40568113 -110215440 + MLT1F1 LTR MaLR 36 125 -442 394 148 49 0 chr11 40568113 40568194 -110215359 + L1MD3 LINE L1 7404 7488 -507 218 366 73 30 chr11 40569593 40569757 -110213796 + L2 LINE L2 3009 3179 -93 517 162 18 9 chr11 40570017 40570128 -110213425 - L1PA16 LINE L1 -1 6165 6054 1227 211 172 109 chr11 40570135 40570860 -110212693 + LTR28 LTR ERV1 1 967 -53 396 256 8 40 chr11 40570900 40571025 -110212528 + LTR28 LTR ERV1 900 1020 0 1598 180 12 19 chr11 40571027 40571349 -110212204 - L1PA16 LINE L1 -110 6056 5737 798 224 55 15 chr11 40571469 40571670 -110211883 - MER49 LTR ERV1 -714 209 1 250 81 0 0 chr11 40571671 40571708 -110211845 - MER39 LTR ERV1 -292 415 379 * 347 115 213 0 chr11 40571706 40571767 -110211786 - MER39B LTR ERV1 -579 74 1 200 35 35 0 chr11 40572079 40572108 -110211445 + (TTG)n Simple_repeat Simple_repeat 2 31 0 1737 149 14 3 chr11 40575378 40575666 -110207887 + AluSx SINE Alu 1 291 -21 28 102 0 0 chr11 40575838 40575936 -110207617 + AT_rich Low_complexity Low_complexity 1 98 0 21 36 0 0 chr11 40576073 40576101 -110207452 + AT_rich Low_complexity Low_complexity 1 28 0 312 127 0 0 chr11 40576121 40576176 -110207377 + (TA)n Simple_repeat Simple_repeat 2 56 0 547 85 0 0 chr11 40576285 40576367 -110207186 + THE1B-int LTR MaLR 1499 1580 0 2081 138 51 28 chr11 40576367 40576723 -110206830 + THE1B LTR MaLR 1 364 0 1907 214 30 14 chr11 40577230 40577668 -110205885 + MLT1B-int LTR MaLR 900 1696 -39 1089 222 43 0 chr11 40577775 40578032 -110205521 - L1 LINE L1 -2217 3929 3662 * 5288 118 22 0 chr11 40578028 40578793 -110204760 - THE1B-int LTR MaLR -798 782 1 879 184 46 83 chr11 40578793 40578867 -110204686 - THE1B LTR MaLR 0 364 289 1818 151 0 0 chr11 40578867 40579145 -110204408 + AluSg SINE Alu 33 310 0 879 184 46 83 chr11 40579145 40579287 -110204266 - THE1B LTR MaLR -75 289 156 1677 163 9 16 chr11 40579387 40579707 -110203846 + MER31A LTR ERV1 168 485 0 3019 230 37 32 chr11 40579707 40581158 -110202395 - L1MC/D LINE L1 -521 5812 4346 662 133 49 28 chr11 40581186 40581329 -110202224 + MLT1B LTR MaLR 54 199 -191 4324 219 11 26 chr11 40581440 40581846 -110201707 + L1M4c LINE L1 25 435 -5949 879 273 77 20 chr11 40581846 40582355 -110201198 - MER34 LTR ERV1 0 542 5 4324 219 11 26 chr11 40582355 40582924 -110200629 + L1M4c LINE L1 435 986 -5398 22 35 0 0 chr11 40583412 40583441 -110200112 + AT_rich Low_complexity Low_complexity 1 29 0 32 0 0 0 chr11 40584518 40584550 -110199003 + AT_rich Low_complexity Low_complexity 1 32 0 5869 98 27 2 chr11 40584680 40585678 -110197875 + L1PA11 LINE L1 5156 6173 -1 329 93 19 0 chr11 40585999 40586053 -110197500 + (TG)n Simple_repeat Simple_repeat 2 56 0 879 124 14 14 chr11 40586286 40586466 -110197087 + AluSg/x SINE Alu 154 312 0 705 162 14 28 chr11 40586473 40586615 -110196938 + FLAM_C SINE Alu 1 140 -3 399 254 99 16 chr11 40586616 40586827 -110196726 + L1ME2 LINE L1 5203 5429 -743 2873 130 60 0 chr11 40586863 40587333 -110196220 - MER75 DNA T2_type -16 498 1 1934 228 80 49 chr11 40587340 40588019 -110195534 + L1ME2 LINE L1 5443 6142 -22 533 213 44 44 chr11 40588557 40588669 -110194884 + AluJo SINE Alu 1 115 -197 2134 123 118 18 chr11 40588669 40589034 -110194519 + MSTA LTR MaLR 1 409 -19 3280 200 19 77 chr11 40589034 40590063 -110193490 - LTR5 LTR ERVK 0 969 1 2134 123 118 18 chr11 40590063 40590086 -110193467 + MSTA LTR MaLR 409 428 0 533 213 44 44 chr11 40590086 40590109 -110193444 + AluJo SINE Alu 114 136 -176 773 228 0 0 chr11 40590120 40590278 -110193275 + AluJo SINE Alu 141 298 -4 1812 168 48 20 chr11 40590503 40590664 -110192889 + THE1B LTR MaLR 3 158 -206 3033 50 0 0 chr11 40590664 40591042 -110192511 - L1PA5 LINE L1 -4 6150 5773 1812 168 48 20 chr11 40591042 40591232 -110192321 + THE1B LTR MaLR 158 364 0 457 295 69 20 chr11 40591444 40591834 -110191719 - L1M4 LINE L1 -2827 3319 2911 23 0 0 0 chr11 40593446 40593469 -110190084 + AT_rich Low_complexity Low_complexity 1 23 0 25 65 0 0 chr11 40593736 40593782 -110189771 + AT_rich Low_complexity Low_complexity 1 46 0 223 337 51 10 chr11 40593888 40593986 -110189567 + MIR SINE MIR 31 132 -130 23 33 0 0 chr11 40594758 40594788 -110188765 + AT_rich Low_complexity Low_complexity 1 30 0 298 302 47 47 chr11 40596024 40596216 -110187337 - MIR SINE MIR -2 260 69 27 73 0 0 chr11 40596252 40596307 -110187246 + AT_rich Low_complexity Low_complexity 1 55 0 198 0 0 0 chr11 40596456 40596478 -110187075 + (GGGAGA)n Simple_repeat Simple_repeat 3 24 0 453 294 27 10 chr11 40597455 40597745 -110185808 + L1M4b LINE L1 1331 1757 -5190 858 249 67 45 chr11 40597764 40597938 -110185615 - L1M4 LINE L1 -2828 3318 3149 1849 188 81 2 chr11 40597938 40598331 -110185222 + MSTA LTR MaLR 1 424 -4 858 249 67 45 chr11 40598331 40598820 -110184733 - L1M4 LINE L1 -2997 3149 2584 21 0 0 0 chr11 40598867 40598888 -110184665 + AT_rich Low_complexity Low_complexity 1 21 0 434 295 72 34 chr11 40598983 40599369 -110184184 + L1M4b LINE L1 1988 2388 -4750 561 202 0 9 chr11 40599385 40599494 -110184059 - FRAM SINE Alu -25 151 44 1572 251 106 22 chr11 40599650 40600101 -110183452 - MLT1F1 LTR MaLR -78 489 1 365 36 0 55 chr11 40601162 40601217 -110182336 + LTR14A LTR ERVK 1 52 -292 691 160 7 62 chr11 40601333 40601477 -110182076 + AluJo SINE Alu 1 136 -176 223 186 39 49 chr11 40601491 40601593 -110181960 + (TATATG)n Simple_repeat Simple_repeat 4 104 0 238 253 0 38 chr11 40604270 40604349 -110179204 + L1ME LINE L1 42 117 -5953 278 288 198 12 chr11 40604469 40604765 -110178788 + L1MB3 LINE L1 5274 5625 -545 839 201 24 6 chr11 40605148 40605317 -110178236 - MER5B DNA MER1_type -1 177 6 1226 273 25 66 chr11 40605411 40605853 -110177700 - MLT1D LTR MaLR -9 496 76 2055 147 0 6 chr11 40605853 40606167 -110177386 + AluSx SINE Alu 1 312 0 1226 273 25 66 chr11 40606167 40606241 -110177312 - MLT1D LTR MaLR -429 76 1 2530 57 0 16 chr11 40606762 40607078 -110176475 + AluY SINE Alu 1 311 0 22 56 0 0 chr11 40607396 40607432 -110176121 + AT_rich Low_complexity Low_complexity 1 36 0 331 296 23 15 chr11 40608475 40608607 -110174946 + MER94 DNA DNA 2 134 0 271 204 17 0 chr11 40609195 40609261 -110174292 + L1MB3 LINE L1 5716 5779 -387 18762 203 32 15 chr11 40609270 40615002 -110168551 + L1PA13 LINE L1 1 5983 -831 2812 7 0 0 chr11 40615002 40615311 -110168242 + AluYa5 SINE Alu 1 309 -2 18762 203 32 15 chr11 40615311 40616158 -110167395 + L1PA13 LINE L1 5983 6814 0 891 126 13 0 chr11 40616151 40616302 -110167251 + L1MB3 LINE L1 5769 5921 -262 * 213 313 36 68 chr11 40616755 40616947 -110166606 - L2 LINE L2 -33 3280 3095 188 299 21 31 chr11 40617327 40617424 -110166129 - MIR3 SINE MIR -3 205 110 291 316 177 6 chr11 40619093 40619251 -110164302 + L3 LINE CR1 1308 1492 -85 439 288 36 45 chr11 40619660 40619882 -110163671 + MIR SINE MIR 43 262 0 25 31 0 0 chr11 40620639 40620671 -110162882 + AT_rich Low_complexity Low_complexity 1 32 0 1934 128 3 3 chr11 40621280 40621595 -110161958 - AluSx SINE Alu 0 315 1 201 74 0 0 chr11 40621776 40621803 -110161750 + (TATG)n Simple_repeat Simple_repeat 4 30 0 22 0 0 0 chr11 40622435 40622457 -110161096 + AT_rich Low_complexity Low_complexity 1 22 0 246 323 182 27 chr11 40622612 40622832 -110160721 - L2 LINE L2 0 3272 3019 1406 218 3 7 chr11 40622866 40623150 -110160403 + AluJb SINE Alu 1 283 -29 216 97 0 0 chr11 40623166 40623197 -110160356 + (TA)n Simple_repeat Simple_repeat 2 32 0 232 312 37 28 chr11 40623301 40623410 -110160143 - L2 LINE L2 -90 3223 3114 1286 116 0 32 chr11 40623475 40623665 -110159888 + AluSx SINE Alu 1 184 -128 232 264 81 0 chr11 40623726 40623813 -110159740 + LTR37A LTR ERV1 51 144 -282 2469 223 31 50 chr11 40623827 40624671 -110158882 + L1 LINE L1 2621 3448 -2698 1504 115 0 5 chr11 40624676 40624885 -110158668 + AluSx SINE Alu 23 230 -82 1089 324 101 38 chr11 40624886 40625748 -110157805 - L2 LINE L2 -534 2780 1813 2396 87 0 0 chr11 40625748 40626059 -110157494 + AluY SINE Alu 1 311 0 1089 324 101 38 chr11 40626059 40626346 -110157207 - L2 LINE L2 -1501 1813 1546 642 327 140 24 chr11 40626371 40626827 -110156726 - L2 LINE L2 -2576 738 230 984 170 53 11 chr11 40626977 40627165 -110156388 - L1PB4 LINE L1 0 6156 5961 3676 61 20 57 chr11 40627213 40627600 -110155953 - L1PA7 LINE L1 0 6154 5791 2385 97 0 0 chr11 40627600 40627911 -110155642 - AluY SINE Alu 0 311 1 3676 61 20 57 chr11 40627911 40628067 -110155486 - L1PA7 LINE L1 -363 5791 5631 1315 243 91 19 chr11 40628447 40628875 -110154678 + MLT1C LTR MaLR 9 467 0 22 56 0 19 chr11 40630449 40630491 -110153062 + AT_rich Low_complexity Low_complexity 1 43 -10 932 168 0 29 chr11 40630491 40630661 -110152892 - L1MA3 LINE L1 -1 6304 6140 1505 190 32 32 chr11 40630661 40630971 -110152582 - AluJb SINE Alu -2 310 1 932 168 0 29 chr11 40630971 40631008 -110152545 - L1MA3 LINE L1 -165 6140 6103 22 56 0 19 chr11 40631008 40631019 -110152534 + AT_rich Low_complexity Low_complexity 43 53 0 189 368 61 0 chr11 40631025 40631139 -110152414 - L2 LINE L2 -1 3312 3192 557 66 0 0 chr11 40631445 40631521 -110152032 + AluSc SINE Alu 218 293 -16 1672 188 3 14 chr11 40631789 40632081 -110151472 + AluJb SINE Alu 1 289 -23 312 305 61 70 chr11 40632358 40632702 -110150851 + L1M4 LINE L1 2280 2620 -3526 1232 234 66 46 chr11 40632750 40633297 -110150256 - L1MEc LINE L1 -5324 1072 515 240 250 92 0 chr11 40633301 40633377 -110150176 - L1MEc LINE L1 -5855 541 459 605 313 4 30 chr11 40633405 40633638 -110149915 - L1MEc LINE L1 -6127 269 43 3029 274 123 8 chr11 40633782 40635013 -110148540 - L1MC4 LINE L1 -174 7868 6496 408 182 0 25 chr11 40635028 40635149 -110148404 + (TA)n Simple_repeat Simple_repeat 2 119 0 236 246 0 16 chr11 40635605 40635666 -110147887 + GA-rich Low_complexity Low_complexity 4 63 0 2929 164 33 74 chr11 40637145 40637864 -110145689 - LTR8 LTR ERV1 -1 690 1 803 223 47 56 chr11 40639347 40639562 -110143991 + MER58A DNA MER1_type 6 218 -6 224 227 50 17 chr11 40640636 40640755 -110142798 + (TA)n Simple_repeat Simple_repeat 2 124 0 634 182 9 0 chr11 40640760 40640870 -110142683 + AluJo SINE Alu 124 234 -78 460 343 15 15 chr11 40641426 40641630 -110141923 - MIR SINE MIR 0 262 59 22 0 0 0 chr11 40641758 40641780 -110141773 + AT_rich Low_complexity Low_complexity 1 22 0 1997 143 32 19 chr11 40642040 40642410 -110141143 - THE1C LTR MaLR 0 375 1 1364 249 100 36 chr11 40643524 40643993 -110139560 + LTR40a LTR ERVL 1 499 -20 25 0 0 0 chr11 40643995 40644020 -110139533 + AT_rich Low_complexity Low_complexity 1 25 0 457 232 81 20 chr11 40644203 40644401 -110139152 - L1ME4a LINE L1 -224 5897 5688 1003 96 32 6 chr11 40645853 40646009 -110137544 - L1PA13 LINE L1 0 6163 6004 4075 140 19 7 chr11 40646009 40646682 -110136871 + MER50 LTR ERV1 3 683 -51 4275 152 10 48 chr11 40646690 40647390 -110136163 - L1PA12 LINE L1 -156 6009 5325 276 70 0 0 chr11 40647390 40647433 -110136120 - AluSp/q SINE Alu -4 299 257 4275 152 10 48 chr11 40647433 40647826 -110135727 - L1PA12 LINE L1 -840 5325 4918 228 229 209 38 chr11 40647826 40647931 -110135622 - MER67D LTR ERV1 -15 499 377 194 125 0 25 chr11 40647933 40647973 -110135580 + (TTTCC)n Simple_repeat Simple_repeat 2 40 0 1194 216 24 76 chr11 40648082 40648410 -110135143 - MER67D LTR ERV1 -203 311 1 2318 50 0 7 chr11 40649220 40649499 -110134054 - AluY SINE Alu -22 289 13 24 67 0 0 chr11 40649686 40649731 -110133822 + AT_rich Low_complexity Low_complexity 1 45 0 26 50 0 0 chr11 40649741 40649781 -110133772 + AT_rich Low_complexity Low_complexity 1 40 0 234 289 0 26 chr11 40651273 40651349 -110132204 + (TATG)n Simple_repeat Simple_repeat 3 76 0 239 186 0 0 chr11 40651595 40651638 -110131915 - MER67C LTR ERV1 -435 275 233 24 0 0 0 chr11 40653307 40653331 -110130222 + AT_rich Low_complexity Low_complexity 1 24 0 5963 36 1 1 chr11 40653732 40654453 -110129100 - L1PA4 LINE L1 -6 6149 5429 25 0 0 0 chr11 40654834 40654859 -110128694 + AT_rich Low_complexity Low_complexity 1 25 0 964 348 112 16 chr11 40654987 40655825 -110127728 + L2 LINE L2 416 1334 -1980 311 276 32 32 chr11 40655947 40656070 -110127483 - L1M4 LINE L1 -1962 4184 4062 312 316 12 42 chr11 40656585 40656753 -110126800 - MLT2E LTR ERVL -419 209 47 487 332 38 21 chr11 40657247 40657485 -110126068 - ERVL LTR ERVL -515 5249 5008 2185 305 102 24 chr11 40657541 40658174 -110125379 - ERVL LTR ERVL -923 4841 4096 2061 128 3 3 chr11 40658174 40658480 -110125073 + AluSc SINE Alu 1 306 -3 2185 305 102 24 chr11 40658480 40658880 -110124673 - ERVL LTR ERVL -1668 4096 3728 4146 174 52 38 chr11 40658928 40659830 -110123723 - L1MA7 LINE L1 -2 6289 5375 5468 251 35 59 chr11 40659834 40661670 -110121883 - L1M4 LINE L1 -1924 5641 3763 1552 111 4 4 chr11 40661670 40661896 -110121657 - AluSg/x SINE Alu -7 305 80 5468 251 35 59 chr11 40661896 40662335 -110121218 - L1M4 LINE L1 -3802 3763 3441 2436 75 3 0 chr11 40662335 40662642 -110120911 - AluY SINE Alu -2 309 2 5468 251 35 59 chr11 40662642 40662988 -110120565 - L1M4 LINE L1 -4124 3441 3088 1319 318 103 56 chr11 40663037 40664084 -110119469 - ERVL LTR ERVL -2293 3192 2097 858 314 57 63 chr11 40664087 40664736 -110118817 - ERVL LTR ERVL -3891 1873 1229 23 0 0 0 chr11 40664978 40665001 -110118552 + AT_rich Low_complexity Low_complexity 1 23 0 258 347 17 23 chr11 40665661 40665837 -110117716 - L1MC/D LINE L1 -2260 5548 5374 195 69 0 0 chr11 40665858 40665887 -110117666 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2515 133 16 23 chr11 40667421 40667858 -110115695 - L1M2 LINE L1 -481 5819 5386 1955 179 21 23 chr11 40667860 40668297 -110115256 + L1MA8 LINE L1 5853 6288 -3 2749 10 0 3 chr11 40668575 40668887 -110114666 + AluYa5 SINE Alu 1 311 0 309 244 25 17 chr11 40669128 40669247 -110114306 + CT-rich Low_complexity Low_complexity 1 120 0 288 190 6 34 chr11 40669370 40669727 -110113826 + (TA)n Simple_repeat Simple_repeat 1 346 0 405 201 40 23 chr11 40669741 40669915 -110113638 + (TA)n Simple_repeat Simple_repeat 2 178 0 225 0 0 0 chr11 40669918 40669943 -110113610 + (CA)n Simple_repeat Simple_repeat 2 26 0 22 35 0 0 chr11 40670994 40671023 -110112530 + AT_rich Low_complexity Low_complexity 1 29 0 551 352 90 39 chr11 40671159 40671763 -110111790 + L2 LINE L2 2679 3312 -1 404 382 145 27 chr11 40672700 40673705 -110109848 + L2 LINE L2 310 1433 -1881 22 35 0 0 chr11 40673941 40673970 -110109583 + AT_rich Low_complexity Low_complexity 1 29 0 486 274 57 28 chr11 40674890 40675102 -110108451 - MER20 DNA MER1_type 0 219 2 2143 102 10 0 chr11 40675397 40675701 -110107852 - AluSp SINE Alu -2 311 5 23 0 0 0 chr11 40675977 40676000 -110107553 + AT_rich Low_complexity Low_complexity 1 23 0 308 318 111 8 chr11 40676386 40676512 -110107041 - L2 LINE L2 -2 3311 3173 1392 205 3 30 chr11 40679027 40679329 -110104224 + AluJo SINE Alu 1 294 -18 996 181 0 82 chr11 40679802 40679914 -110103639 + AluJo SINE Alu 75 195 -136 4086 161 70 58 chr11 40679914 40680973 -110102580 + MER11C LTR ERVK 1 1071 0 996 181 0 82 chr11 40680973 40681136 -110102417 + AluJo SINE Alu 195 331 0 1863 154 0 3 chr11 40681376 40681662 -110101891 - AluSx SINE Alu -27 285 1 21 0 0 0 chr11 40681857 40681878 -110101675 + AT_rich Low_complexity Low_complexity 1 21 0 180 377 48 54 chr11 40682330 40682497 -110101056 + MIR SINE MIR 19 184 -78 25 51 0 0 chr11 40682567 40682606 -110100947 + AT_rich Low_complexity Low_complexity 1 39 0 33 100 0 0 chr11 40682743 40682853 -110100700 + AT_rich Low_complexity Low_complexity 1 110 0 555 164 12 6 chr11 40682860 40683110 -110100443 + AluJ SINE Alu 1 312 0 22 70 0 0 chr11 40683113 40683156 -110100397 + AT_rich Low_complexity Low_complexity 1 43 0 323 318 71 35 chr11 40683390 40683588 -110099965 - L1ME LINE L1 -409 5712 5508 333 353 97 35 chr11 40683836 40684094 -110099459 + HAL1 LINE L1 450 723 -1784 487 291 204 18 chr11 40684290 40684678 -110098875 - LTR50 LTR ERVL -106 689 230 307 314 53 35 chr11 40684809 40684978 -110098575 + HAL1 LINE L1 872 1043 -1464 911 87 0 0 chr11 40684982 40685109 -110098444 + AluY SINE Alu 184 310 -1 323 353 50 7 chr11 40685727 40685866 -110097687 + MIR3 SINE MIR 48 192 -16 203 143 0 24 chr11 40686532 40686574 -110096979 + (GAAA)n Simple_repeat Simple_repeat 2 42 0 2023 170 13 16 chr11 40687398 40687774 -110095779 - THE1C LTR MaLR 0 375 1 9059 138 47 5 chr11 40687774 40689290 -110094263 - THE1C-int LTR MaLR 0 1580 1 1292 169 93 65 chr11 40689290 40689644 -110093909 - THE1C LTR MaLR 0 364 1 1123 211 24 16 chr11 40689646 40689893 -110093660 + AluJb SINE Alu 5 253 -59 312 108 14 27 chr11 40689893 40689967 -110093586 + (TA)n Simple_repeat Simple_repeat 1 73 0 24 32 0 0 chr11 40690040 40690071 -110093482 + AT_rich Low_complexity Low_complexity 1 31 0 26 0 0 0 chr11 40690558 40690584 -110092969 + AT_rich Low_complexity Low_complexity 1 26 0 227 298 0 0 chr11 40693940 40694025 -110089528 + (TGGA)n Simple_repeat Simple_repeat 1 85 0 231 156 89 0 chr11 40694447 40694492 -110089061 - MIR SINE MIR -49 213 165 322 320 92 98 chr11 40694668 40695005 -110088548 - L1ME3A LINE L1 0 6588 6254 826 322 27 24 chr11 40695058 40695630 -110087923 - L1ME3A LINE L1 -464 6124 5544 253 261 61 33 chr11 40695962 40696142 -110087411 - L1ME3A LINE L1 -3528 3036 2852 329 328 0 16 chr11 40697471 40697599 -110085954 + MLT1I LTR MaLR 284 409 0 3240 255 34 43 chr11 40697851 40699023 -110084530 - L1ME3A LINE L1 -4882 1163 3 266 227 55 45 chr11 40699793 40699903 -110083650 - MER3 DNA MER1_type -5 204 94 324 83 0 0 chr11 40700067 40700115 -110083438 + (CA)n Simple_repeat Simple_repeat 1 48 0 265 180 0 0 chr11 40700179 40700217 -110083336 - MSTB2 LTR MaLR 0 428 388 1646 160 72 39 chr11 40700217 40700580 -110082973 + THE1C LTR MaLR 1 375 0 265 180 0 0 chr11 40700580 40700591 -110082962 - MSTB2 LTR MaLR -39 389 379 5348 160 21 49 chr11 40700591 40701617 -110081936 + THE1C-int LTR MaLR 12 1009 -571 3794 69 0 243 chr11 40701620 40702529 -110081024 + LTR12 LTR ERV1 1 688 0 20094 103 22 8 chr11 40702529 40705462 -110078091 + HERV9 LTR ERV1 1 2972 -5427 1298 140 23 5 chr11 40705461 40705682 -110077871 + HERV9 LTR ERV1 4756 4980 -3419 * 2054 115 11 17 chr11 40705688 40706035 -110077518 + HERV17 LTR ERV1 703 1047 -7579 1932 103 2 16 chr11 40706024 40706449 -110077104 + HERV17 LTR ERV1 1275 1740 -5156 * 5706 92 5 0 chr11 40706446 40707217 -110076336 + HERV17 LTR ERV1 7625 8399 0 1505 59 106 94 chr11 40707217 40707473 -110076080 + LTR12 LTR ERV1 1 259 -455 342 265 8 0 chr11 40707473 40707590 -110075963 + LTR30 LTR ERV1 526 643 -79 1649 141 3 63 chr11 40707590 40708103 -110075450 + LTR12 LTR ERV1 480 714 0 3338 112 55 22 chr11 40708106 40708649 -110074904 + THE1C-int LTR MaLR 1014 1574 -6 1721 166 46 25 chr11 40708654 40709021 -110074532 + THE1C LTR MaLR 1 375 0 317 22 0 44 chr11 40709021 40709060 -110074493 - MSTB2 LTR MaLR -34 423 387 * 831 153 83 19 chr11 40709059 40709216 -110074337 - THE1C LTR MaLR -208 167 1 23 0 0 0 chr11 40709591 40709614 -110073939 + AT_rich Low_complexity Low_complexity 1 23 0 1826 174 0 0 chr11 40709688 40709975 -110073578 + AluJb SINE Alu 3 289 -23 280 292 22 0 chr11 40711006 40711095 -110072458 + GA-rich Low_complexity Low_complexity 3 93 0 264 212 12 24 chr11 40712626 40712711 -110070842 + (TA)n Simple_repeat Simple_repeat 2 85 0 310 294 24 0 chr11 40713540 40713625 -110069928 + MLT1F1 LTR MaLR 1 87 -480 981 197 26 18 chr11 40713875 40714103 -110069450 + L1MB2 LINE L1 5869 6098 -73 2004 195 114 120 chr11 40714105 40715029 -110068524 - LTR28 LTR ERV1 0 1020 1 446 133 0 0 chr11 40715035 40715110 -110068443 + L1MB2 LINE L1 6095 6169 -2 253 301 96 0 chr11 40715248 40715331 -110068222 - MIR3 SINE MIR -5 203 113 310 279 13 0 chr11 40717487 40717566 -110065987 - L2 LINE L2 0 3313 3234 314 215 81 96 chr11 40717648 40717857 -110065696 + HAL1b LINE L1 553 758 -590 314 239 44 18 chr11 40718029 40718142 -110065411 + HAL1b LINE L1 1042 1157 -191 189 74 0 0 chr11 40718190 40718217 -110065336 + (TATG)n Simple_repeat Simple_repeat 2 28 0 185 313 0 0 chr11 40718325 40718373 -110065180 - L2 LINE L2 -2063 1251 1204 1881 193 38 36 chr11 40718378 40718621 -110064932 - MSTB LTR MaLR -5 421 175 4793 9 0 0 chr11 40718621 40719163 -110064390 - L1PA2 LINE L1 0 6155 5614 1881 193 38 36 chr11 40719163 40719338 -110064215 - MSTB LTR MaLR -251 175 2 240 297 0 0 chr11 40719917 40719981 -110063572 - MIR SINE MIR -102 160 97 509 249 203 5 chr11 40720660 40720877 -110062676 - MIR SINE MIR -1 261 2 272 266 52 71 chr11 40720887 40721041 -110062512 - MIR SINE MIR -44 218 68 22 56 0 0 chr11 40722023 40722059 -110061494 + AT_rich Low_complexity Low_complexity 1 36 0 301 189 22 22 chr11 40722540 40722630 -110060923 + L1MA10 LINE L1 6244 6333 -1 1920 136 0 20 chr11 40722982 40723276 -110060277 + AluSx SINE Alu 1 288 -24 221 339 74 8 chr11 40723335 40723456 -110060097 - MIR SINE MIR -73 189 61 6835 113 8 3 chr11 40723465 40725323 -110058230 + L1PA8 LINE L1 4306 6172 0 2109 116 3 16 chr11 40725801 40726111 -110057442 + AluSq SINE Alu 1 306 -7 205 156 0 0 chr11 40726214 40726246 -110057307 + (CA)n Simple_repeat Simple_repeat 1 32 0 21 0 0 0 chr11 40726477 40726498 -110057055 + AT_rich Low_complexity Low_complexity 1 21 0 326 189 0 0 chr11 40726796 40726849 -110056704 + MER94 DNA DNA 1 53 -81 1345 330 27 34 chr11 40727130 40727693 -110055860 + L1M3c LINE L1 230 788 -5569 814 301 45 21 chr11 40727886 40728268 -110055285 + L1M3c LINE L1 1060 1450 -4907 1051 145 30 0 chr11 40728274 40728440 -110055113 + AluSg/x SINE Alu 135 305 -7 1068 233 33 42 chr11 40728440 40728844 -110054709 + L1MA10 LINE L1 1174 1829 -4528 * 3900 203 38 77 chr11 40728831 40731748 -110051805 + L1MA10 LINE L1 3963 6611 -3 1252 271 60 53 chr11 40732874 40734063 -110049490 + L1MEc LINE L1 1414 2586 -3629 793 150 20 13 chr11 40734056 40734209 -110049344 + L1MC3 LINE L1 6539 6692 -1093 * 1294 164 29 4 chr11 40734256 40734500 -110049053 - L1PA16 LINE L1 -29 6137 5888 4153 234 33 15 chr11 40734628 40737724 -110045829 - L1PA16 LINE L1 -237 7367 3118 308 264 35 0 chr11 40737791 40737878 -110045675 + L1MC4 LINE L1 6614 6703 -1339 297 0 0 0 chr11 40737909 40737942 -110045611 + (TG)n Simple_repeat Simple_repeat 2 34 0 2129 262 27 56 chr11 40737960 40738726 -110044827 - L1PA16 LINE L1 -4510 3071 2330 2017 116 7 14 chr11 40738726 40739019 -110044534 - AluSq SINE Alu -22 291 1 2129 262 27 56 chr11 40739019 40739092 -110044461 - L1PA16 LINE L1 -5251 2330 2256 355 333 10 14 chr11 40739404 40739616 -110043937 - L1PA16 LINE L1 -5276 2298 2083 845 354 57 38 chr11 40739629 40740228 -110043325 - L1PA16 LINE L1 -6177 1397 788 3048 222 65 25 chr11 40740235 40741046 -110042507 + L1MC3 LINE L1 6717 7560 -225 238 296 23 0 chr11 40741100 40741188 -110042365 + L1MC4 LINE L1 6614 6703 -1339 248 232 107 9 chr11 40741200 40741312 -110042241 + L1MC3 LINE L1 7576 7698 -87 337 248 0 73 chr11 40741747 40741762 -110041791 + L1ME3A LINE L1 5998 6013 -157 1992 164 48 26 chr11 40741762 40742177 -110041376 + MSTA LTR MaLR 3 426 -2 337 248 0 73 chr11 40742177 40742298 -110041255 + L1ME3A LINE L1 6013 6124 -46 1443 281 70 51 chr11 40742400 40743112 -110040441 - L1MC4a LINE L1 0 7808 7083 2216 158 14 59 chr11 40743137 40743816 -110039737 + L1MA4A LINE L1 4873 5524 -743 2728 159 66 24 chr11 40743822 40743909 -110039644 + L1MA4A LINE L1 5699 5781 -522 351 0 0 0 chr11 40743909 40743948 -110039605 + (CA)n Simple_repeat Simple_repeat 2 40 0 2728 159 66 24 chr11 40743948 40744439 -110039114 + L1MA4A LINE L1 5781 6301 -2 322 21 43 0 chr11 40745697 40745744 -110037809 + (TAAAA)n Simple_repeat Simple_repeat 4 52 0 242 282 115 0 chr11 40747476 40747554 -110035999 + MIR SINE MIR 67 153 -55 256 261 67 92 chr11 40747576 40747653 -110035900 + MIR3 SINE MIR 67 141 -67 1562 189 39 0 chr11 40747653 40747938 -110035615 + AluJb SINE Alu 1 296 -16 256 261 67 92 chr11 40747938 40747979 -110035574 + MIR3 SINE MIR 141 182 -26 852 147 71 43 chr11 40748995 40749179 -110034374 + MLT1B LTR MaLR 1 189 -201 369 75 0 0 chr11 40749179 40749232 -110034321 + (TC)n Simple_repeat Simple_repeat 2 54 0 841 236 15 10 chr11 40749238 40749441 -110034112 + MLT1B LTR MaLR 187 390 0 330 359 101 30 chr11 40749465 40749891 -110033662 + L2 LINE L2 2853 3308 -5 2341 151 59 2 chr11 40750361 40750766 -110032787 + MSTA LTR MaLR 1 428 0 900 257 5 10 chr11 40751396 40751602 -110031951 - MIR SINE MIR -56 206 2 4653 224 48 14 chr11 40751711 40752927 -110030626 + L1MC3 LINE L1 6509 7765 -20 208 103 0 51 chr11 40753065 40753104 -110030449 + (CAAAAA)n Simple_repeat Simple_repeat 1 37 0 5295 142 12 11 chr11 40753876 40754941 -110028612 + L1PB4 LINE L1 4977 6181 -118 20221 63 8 1 chr11 40754941 40758401 -110025152 - L1PA6 LINE L1 -3 6151 2674 5295 142 12 11 chr11 40758401 40758518 -110025035 + L1PB4 LINE L1 6181 6296 -3 494 288 62 25 chr11 40759011 40759171 -110024382 + MIR3 SINE MIR 38 203 -5 254 358 125 24 chr11 40759743 40760198 -110023355 + L2 LINE L2 2112 2612 -702 2087 113 7 13 chr11 40761092 40761401 -110022152 + AluSc SINE Alu 1 307 -2 1074 132 11 11 chr11 40761401 40761575 -110021978 + AluSg/x SINE Alu 132 305 -5 329 140 11 43 chr11 40761580 40761673 -110021880 + L1MA4A LINE L1 6214 6303 0 1761 207 101 14 chr11 40762791 40763207 -110020346 - L1MC/D LINE L1 -558 5775 5324 815 137 29 7 chr11 40763213 40763352 -110020201 - FRAM SINE Alu -4 172 31 2531 241 37 1 chr11 40763353 40764033 -110019520 - L1MC/D LINE L1 -816 5330 4627 30 59 0 0 chr11 40764223 40764274 -110019279 + AT_rich Low_complexity Low_complexity 1 51 0 199 243 0 0 chr11 40764388 40764425 -110019128 + MIR SINE MIR 79 115 -147 298 263 50 0 chr11 40764488 40764572 -110018981 - MIR SINE MIR -62 146 64 2184 72 6 62 chr11 40764730 40765051 -110018502 - AluY SINE Alu -8 303 1 1547 240 54 14 chr11 40765370 40765816 -110017737 + L1M4 LINE L1 3741 4204 -1942 194 194 16 0 chr11 40765844 40765906 -110017647 + (TA)n Simple_repeat Simple_repeat 2 64 0 312 260 0 42 chr11 40765920 40766016 -110017537 + L1MC4 LINE L1 6611 6702 -1340 521 171 0 0 chr11 40766030 40766112 -110017441 + Tigger3(Golem) DNA MER2_type 1 82 -2947 * 1044 150 0 6 chr11 40766110 40766283 -110017270 + Tigger3(Golem) DNA MER2_type 2722 2893 -136 620 246 97 121 chr11 40766284 40766895 -110016658 + LTR4 LTR ERV1 1 596 0 717 176 23 8 chr11 40766898 40767029 -110016524 + Tigger3(Golem) DNA MER2_type 2903 3035 0 1564 244 6 8 chr11 40767628 40767992 -110015561 + MLT1A1 LTR MaLR 1 363 -2 23 33 0 0 chr11 40768183 40768213 -110015340 + AT_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chr11 40768282 40768307 -110015246 + AT_rich Low_complexity Low_complexity 1 25 0 65 43 0 0 chr11 40768372 40768465 -110015088 + AT_rich Low_complexity Low_complexity 1 93 0 1718 186 27 0 chr11 40768488 40768789 -110014764 + AluJb SINE Alu 1 309 -3 25 0 0 0 chr11 40769142 40769167 -110014386 + AT_rich Low_complexity Low_complexity 1 25 0 810 292 64 40 chr11 40769603 40769993 -110013560 - MLT1J2 LTR MaLR -27 423 50 300 222 22 0 chr11 40770190 40770280 -110013273 - L1M4 LINE L1 -1062 5084 4993 1370 97 66 0 chr11 40770294 40770522 -110013031 + L1P LINE L1 5057 5299 -847 * 13128 28 4 0 chr11 40770521 40772457 -110011096 + L1P1 LINE L1 3817 5760 -395 2091 55 0 0 chr11 40772557 40772813 -110010740 - AluY SINE Alu -55 256 1 4646 214 29 22 chr11 40772813 40774815 -110008738 + L1M3f LINE L1 384 2419 -3909 1239 39 13 0 chr11 40774815 40774971 -110008582 + L1PA6 LINE L1 5993 6150 -4 4646 214 29 22 chr11 40774971 40775864 -110007689 + L1M3f LINE L1 2419 3304 -3024 8402 32 8 1 chr11 40775964 40777746 -110005807 + L1PA3 LINE L1 4363 6149 -6 26 50 0 0 chr11 40779362 40779402 -110004151 + AT_rich Low_complexity Low_complexity 1 40 0 197 178 67 0 chr11 40779759 40779804 -110003749 + MIR SINE MIR 117 164 -98 2057 145 0 0 chr11 40779968 40780279 -110003274 + AluSx SINE Alu 1 311 -1 25 0 0 0 chr11 40780383 40780408 -110003145 + AT_rich Low_complexity Low_complexity 1 25 0 545 240 14 7 chr11 40780409 40780555 -110002998 + Charlie1a DNA MER1_type 50 196 -1259 477 148 167 9 chr11 40780555 40780663 -110002890 + L1M3f LINE L1 2 126 -5202 2205 112 0 0 chr11 40781682 40781976 -110001577 - AluSg SINE Alu -12 298 5 186 360 84 40 chr11 40782069 40782319 -110001234 - MIR SINE MIR -1 261 1 86 64 0 0 chr11 40782440 40782596 -110000957 + AT_rich Low_complexity Low_complexity 1 156 0 30 0 0 0 chr11 40782849 40782879 -110000674 + AT_rich Low_complexity Low_complexity 1 30 0 365 214 22 77 chr11 40783350 40783532 -110000021 + L1M4 LINE L1 4996 5167 -979 757 296 37 8 chr11 40783551 40783794 -109999759 + L1MB1 LINE L1 1 250 -6292 323 247 39 0 chr11 40783848 40783925 -109999628 + L1MB1 LINE L1 350 429 -6113 4982 260 102 35 chr11 40783929 40786856 -109996697 + L1MB1 LINE L1 3221 6355 -311 4495 131 20 57 chr11 40786958 40787602 -109995951 - L1PA14 LINE L1 -17 6144 5478 183 42 0 0 chr11 40787602 40787626 -109995927 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 2042 97 4 0 chr11 40787626 40787904 -109995649 - AluSg SINE Alu -31 279 1 4495 131 20 57 chr11 40787904 40788088 -109995465 - L1PA14 LINE L1 -681 5480 5345 1469 246 31 18 chr11 40788091 40788547 -109995006 + L1P LINE L1 2902 3363 -2783 23 0 0 0 chr11 40788859 40788882 -109994671 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr11 40788951 40788980 -109994573 + AT_rich Low_complexity Low_complexity 1 29 0 4060 159 41 73 chr11 40789889 40791281 -109992272 + LTR12 LTR ERV1 5 714 0 902 242 56 50 chr11 40791369 40791753 -109991800 + MER67C LTR ERV1 1 403 -260 1025 260 136 13 chr11 40791917 40792463 -109991090 - MER114 LTR ERV 0 648 36 385 298 48 66 chr11 40792798 40793451 -109990102 + L1M4 LINE L1 1256 1982 -4843 253 268 78 70 chr11 40793556 40793698 -109989855 + L1M4 LINE L1 1842 2059 -4585 367 253 83 74 chr11 40793763 40793992 -109989561 + L1M4 LINE L1 2440 2670 -3974 342 125 0 0 chr11 40794169 40794217 -109989336 - MLT1A2 LTR MaLR 0 374 327 244 125 62 38 chr11 40794355 40794435 -109989118 + (TA)n Simple_repeat Simple_repeat 2 83 0 21 89 0 0 chr11 40794437 40794493 -109989060 + AT_rich Low_complexity Low_complexity 1 56 0 5190 53 6 21 chr11 40795066 40795410 -109988143 + L1PA7 LINE L1 5482 5813 -341 2344 102 0 0 chr11 40795410 40795715 -109987838 + AluSx SINE Alu 1 305 -7 5190 53 6 21 chr11 40795715 40796051 -109987502 + L1PA7 LINE L1 5813 6152 -2 1789 161 145 18 chr11 40796088 40796395 -109987158 + MSTA LTR MaLR 1 366 -62 1673 64 0 0 chr11 40796395 40796615 -109986938 + L1PA5 LINE L1 5934 6153 -1 1789 161 145 18 chr11 40796615 40796687 -109986866 + MSTA LTR MaLR 366 428 0 496 262 62 65 chr11 40796882 40797191 -109986362 - L1M4 LINE L1 -1746 4400 4093 23 54 0 0 chr11 40797230 40797267 -109986286 + AT_rich Low_complexity Low_complexity 1 37 0 2268 91 3 40 chr11 40797271 40797623 -109985930 - L1PA13 LINE L1 -11 6152 5814 1097 24 0 0 chr11 40797623 40797746 -109985807 - AluYa5/8 SINE Alu -20 291 169 11859 191 26 16 chr11 40797755 40800867 -109982686 - L1PA13 LINE L1 -345 5818 2679 1985 140 35 24 chr11 40802256 40802627 -109980926 + THE1C LTR MaLR 1 375 0 1976 163 126 8 chr11 40802669 40803050 -109980503 + MSTA LTR MaLR 1 426 -2 8162 157 24 39 chr11 40803054 40804655 -109978898 + MSTA-int LTR MaLR 3 1579 -1 1648 176 146 8 chr11 40804656 40805032 -109978521 + MSTA LTR MaLR 1 428 0 1904 109 10 34 chr11 40805525 40805800 -109977753 + AluY SINE Alu 21 290 -21 225 0 0 0 chr11 40805800 40805825 -109977728 + (TTAAA)n Simple_repeat Simple_repeat 2 26 0 1904 109 10 34 chr11 40805825 40805842 -109977711 + AluY SINE Alu 290 306 -5 273 294 16 16 chr11 40806369 40806556 -109976997 - L1M4 LINE L1 -2906 3240 3054 280 268 18 0 chr11 40806988 40807100 -109976453 + L1M1 LINE L1 2652 2765 -4800 * 1229 318 40 38 chr11 40807085 40807639 -109975914 + L1M3e LINE L1 505 1059 -6430 262 287 39 47 chr11 40807732 40807861 -109975692 + L1M3e LINE L1 2284 2411 -5078 956 143 13 0 chr11 40807961 40808115 -109975438 - L1MC/D LINE L1 -2087 5698 5543 287 231 64 0 chr11 40808125 40808203 -109975350 - L1M4 LINE L1 -1924 4222 4140 1937 149 65 9 chr11 40808213 40808386 -109975167 + MER1B DNA MER1_type 1 163 -2549 1688 164 63 36 chr11 40808386 40808751 -109974802 - THE1C LTR MaLR 0 375 1 1937 149 65 9 chr11 40808751 40808898 -109974655 + MER1B DNA MER1_type 163 339 0 1846 267 31 40 chr11 40808925 40809753 -109973800 - L1M4 LINE L1 -2078 4068 3248 247 191 0 0 chr11 40809979 40810021 -109973532 - MER110A LTR ERV1 -4 464 423 429 283 44 28 chr11 40810488 40810668 -109972885 - MLT1E3 LTR MaLR -393 231 49 203 235 0 39 chr11 40810878 40810929 -109972624 + CT-rich Low_complexity Low_complexity 4 52 0 21 0 0 0 chr11 40811976 40811997 -109971556 + AT_rich Low_complexity Low_complexity 1 21 0 24034 46 2 4 chr11 40812885 40815884 -109967669 + L1P LINE L1 1 2994 -3152 1310 114 15 0 chr11 40815984 40816186 -109967367 + L1PA10 LINE L1 5815 6019 -149 833 182 9 51 chr11 40816185 40816399 -109967154 + L1M3e LINE L1 3416 3620 -3945 * 1205 68 0 12 chr11 40816399 40816562 -109966991 + L1PA6 LINE L1 5991 6151 -3 996 107 7 0 chr11 40816572 40816722 -109966831 + L1PA8 LINE L1 6022 6172 0 1431 208 55 60 chr11 40816722 40817018 -109966535 + L1M3e LINE L1 4602 4895 -2670 2115 125 3 7 chr11 40817018 40817313 -109966240 + AluSx SINE Alu 1 294 -18 1431 208 55 60 chr11 40817313 40817545 -109966008 + L1M3e LINE L1 4895 5127 -2438 1404 226 83 16 chr11 40817545 40818049 -109965504 + Charlie1 DNA MER1_type 2223 2760 -1 591 266 70 33 chr11 40818735 40819006 -109964547 - L1ME2 LINE L1 -7 6157 5877 1174 293 36 4 chr11 40819012 40819462 -109964091 - L1ME2 LINE L1 -319 5845 5382 27 49 0 0 chr11 40819500 40819541 -109964012 + AT_rich Low_complexity Low_complexity 1 41 0 22 35 0 0 chr11 40819601 40819630 -109963923 + AT_rich Low_complexity Low_complexity 1 29 0 273 281 209 22 chr11 40819630 40819908 -109963645 - L1ME2 LINE L1 -950 5196 4867 756 219 13 0 chr11 40819917 40820068 -109963485 + LTR69 LTR ERVL 1 153 -435 1988 133 7 7 chr11 40820764 40821065 -109962488 - AluSx SINE Alu -11 301 1 2236 113 0 3 chr11 40821574 40821947 -109961606 + AluSg SINE Alu 1 372 0 1961 193 6 53 chr11 40822336 40822803 -109960750 + MER65A LTR ERV1 1 445 0 294 316 51 6 chr11 40823514 40823680 -109959873 + L1ME LINE L1 5537 5704 -460 21 36 0 0 chr11 40823702 40823730 -109959823 + AT_rich Low_complexity Low_complexity 1 28 0 463 321 24 6 chr11 40826980 40827148 -109956405 - MIR SINE MIR -4 258 88 963 132 0 0 chr11 40827790 40827926 -109955627 - AluSq/x SINE Alu -175 138 3 1477 202 40 104 chr11 40828080 40828635 -109954918 + MLT2B1 LTR ERVL 1 519 -1 519 280 32 1 chr11 40828869 40829036 -109954517 - L1ME1 LINE L1 -1 6333 6003 494 250 104 42 chr11 40829043 40829235 -109954318 - MER46C DNA MER2_type -134 204 1 243 339 0 0 chr11 40829407 40829463 -109954090 + L2 LINE L2 3196 3251 -21 249 268 0 0 chr11 40829564 40829577 -109953976 + MER3 DNA MER1_type 35 47 -162 664 235 34 0 chr11 40829577 40829726 -109953827 - MER3 DNA MER1_type 0 209 56 307 319 65 22 chr11 40829885 40830023 -109953530 - MIR3 SINE MIR -62 146 3 1470 190 90 80 chr11 40830424 40830924 -109952629 - MLT1D LTR MaLR 0 505 1 1966 150 13 0 chr11 40831096 40831396 -109952157 + AluSp SINE Alu 1 304 -9 286 267 27 27 chr11 40831473 40831548 -109952005 - L2 LINE L2 -1 3312 3238 3210 137 22 2 chr11 40831578 40832073 -109951480 - LTR10B LTR ERV1 0 505 1 6806 275 31 25 chr11 40832073 40834139 -109949414 - LTR10B-int LTR ERV1 0 6649 4571 3726 216 38 27 chr11 40834247 40835127 -109948426 - HERVI LTR ERV1 -4890 1759 871 1774 262 40 35 chr11 40835156 40835760 -109947793 - HERVI LTR ERV1 -6662 1123 517 961 228 98 8 chr11 40835864 40836118 -109947435 - HERVI LTR ERV1 -6367 282 6 3187 124 24 16 chr11 40836120 40836621 -109946932 - LTR10B LTR ERV1 0 505 1 1765 229 39 8 chr11 40836721 40837205 -109946348 + L1MB7 LINE L1 5666 6164 -20 1165 170 30 0 chr11 40837466 40837696 -109945857 - L1P LINE L1 -4127 2019 1783 479 196 51 22 chr11 40838217 40838355 -109945198 - L1MEc LINE L1 -5230 1166 1025 1737 182 47 11 chr11 40838379 40838741 -109944812 - THE1C LTR MaLR 0 375 1 2198 137 6 11 chr11 40838741 40839098 -109944455 - THE1C-int LTR MaLR 0 1580 1226 363 250 50 10 chr11 40839098 40839198 -109944355 + MLT1I LTR MaLR 306 409 0 1063 43 0 14 chr11 40840224 40840364 -109943189 + L1PA5 LINE L1 6017 6154 0 23 0 0 0 chr11 40841887 40841910 -109941643 + AT_rich Low_complexity Low_complexity 1 23 0 185 385 13 0 chr11 40842033 40842111 -109941442 - MIR SINE MIR -66 142 64 227 329 35 0 chr11 40842521 40842606 -109940947 - MIR3 SINE MIR -45 163 76 191 161 18 0 chr11 40842765 40842821 -109940732 + (TA)n Simple_repeat Simple_repeat 2 58 0 192 312 0 0 chr11 40843456 40843549 -109940004 + (TA)n Simple_repeat Simple_repeat 2 94 0 233 210 16 0 chr11 40843695 40843757 -109939796 + (TATATG)n Simple_repeat Simple_repeat 3 65 0 226 196 107 0 chr11 40843770 40843826 -109939727 + L1MC3 LINE L1 6583 6644 -1141 1508 205 27 56 chr11 40843892 40844268 -109939285 - MLT2D LTR ERVL -48 366 2 393 289 122 30 chr11 40844270 40844533 -109939020 + L1M4 LINE L1 4061 4347 -1799 1361 101 96 0 chr11 40844958 40845167 -109938386 - MER30 DNA MER1_type -1 229 1 31 58 0 0 chr11 40845224 40845276 -109938277 + AT_rich Low_complexity Low_complexity 1 52 0 2506 128 5 8 chr11 40847361 40847737 -109935816 - THE1C LTR MaLR 0 375 1 351 0 0 0 chr11 40847806 40847845 -109935708 + (TG)n Simple_repeat Simple_repeat 2 40 0 596 271 141 7 chr11 40848211 40848510 -109935043 + MER58B DNA MER1_type 2 340 -1 1263 276 59 51 chr11 40849327 40850072 -109933481 + MER97c DNA MER1_type? 6 756 -334 3792 267 52 29 chr11 40850107 40851498 -109932055 + L1M4 LINE L1 17 1440 -5102 2740 124 143 126 chr11 40851500 40852678 -109930875 - LTR12 LTR ERV1 0 1523 9 1433 292 8 10 chr11 40852724 40853210 -109930343 + L1M4 LINE L1 1432 1916 -4730 436 314 85 92 chr11 40853210 40853918 -109929635 + L1MDa LINE L1 19 721 -5819 3148 219 43 47 chr11 40854399 40855136 -109928417 - L1MC3 LINE L1 -743 5403 5529 2290 80 17 7 chr11 40855136 40855435 -109928118 + AluY SINE Alu 4 305 -6 3148 219 43 47 chr11 40855435 40856588 -109926965 - L1MC3 LINE L1 -616 5530 4374 838 226 163 26 chr11 40856603 40856984 -109926569 - L1MC3 LINE L1 -1910 4236 3804 211 320 175 26 chr11 40857001 40857195 -109926358 - L3 LINE CR1 -733 844 622 239 304 103 92 chr11 40857362 40857635 -109925918 - L3 LINE CR1 -1039 538 263 1937 232 37 5 chr11 40858383 40858814 -109924739 - MER68 LTR ERV1 -1 561 117 345 253 55 71 chr11 40858968 40859150 -109924403 + MIR SINE MIR 23 201 -61 369 0 0 0 chr11 40860273 40860314 -109923239 + (TG)n Simple_repeat Simple_repeat 2 42 0 362 235 12 0 chr11 40860378 40860459 -109923094 + MLT1F LTR MaLR 1 82 -460 512 271 158 6 chr11 40860582 40860759 -109922794 + MLT1F LTR MaLR 240 443 -99 264 77 0 0 chr11 40860783 40860822 -109922731 + (A)n Simple_repeat Simple_repeat 1 39 0 21 71 0 0 chr11 40861180 40861222 -109922331 + AT_rich Low_complexity Low_complexity 1 42 0 298 338 99 40 chr11 40861430 40861631 -109921922 + L2 LINE L2 2728 2940 -374 226 367 25 35 chr11 40861789 40861988 -109921565 + L2 LINE L2 3117 3313 0 1659 166 176 166 chr11 40862078 40863087 -109920466 + LTR28 LTR ERV1 1 1020 0 2348 67 3 3 chr11 40863960 40864260 -109919293 - AluY SINE Alu -11 300 1 186 402 0 0 chr11 40864660 40864747 -109918806 - MIR SINE MIR -88 120 34 24 0 0 0 chr11 40865301 40865325 -109918228 + AT_rich Low_complexity Low_complexity 1 24 0 333 389 50 13 chr11 40865431 40865670 -109917883 + MIR SINE MIR 2 249 -13 1472 224 49 58 chr11 40865981 40866483 -109917070 + MLT1F1 LTR MaLR 1 542 0 214 205 0 51 chr11 40866800 40866878 -109916675 + T-rich Low_complexity Low_complexity 2 75 0 198 143 0 0 chr11 40867416 40867451 -109916102 + (TG)n Simple_repeat Simple_repeat 2 36 0 425 136 171 0 chr11 40869468 40869556 -109913997 - AluSx SINE Alu -14 296 194 1028 121 0 0 chr11 40869562 40869703 -109913850 - AluSx SINE Alu -172 141 1 35 41 0 0 chr11 40870311 40870360 -109913193 + AT_rich Low_complexity Low_complexity 1 49 0 5554 196 50 15 chr11 40870377 40871231 -109912322 - L1MC1 LINE L1 -5 6328 5402 726 215 168 47 chr11 40871231 40871612 -109911941 - MSTC LTR MaLR -1 427 1 5554 196 50 15 chr11 40871612 40872235 -109911318 - L1MC1 LINE L1 -931 5402 4802 268 353 114 6 chr11 40872256 40872423 -109911130 - MIR SINE MIR -56 206 22 2006 103 0 0 chr11 40872700 40872961 -109910592 + AluSg SINE Alu 40 300 -10 343 306 56 65 chr11 40874234 40874466 -109909087 + HAL1b LINE L1 684 913 -435 7729 201 87 25 chr11 40875131 40876781 -109906772 - MER52A LTR ERV1 -3 1752 1 798 194 78 119 chr11 40876832 40877135 -109906418 - MLT1A1 LTR MaLR -1 364 76 1878 89 55 30 chr11 40877135 40877440 -109906113 + AluSc SINE Alu 1 312 0 798 194 78 119 chr11 40877440 40877496 -109906057 - MLT1A1 LTR MaLR -289 76 19 180 279 99 99 chr11 40877685 40877857 -109905696 + MIR SINE MIR 72 243 -19 26 0 0 0 chr11 40878496 40878522 -109905031 + AT_rich Low_complexity Low_complexity 1 26 0 338 74 19 0 chr11 40878711 40878765 -109904788 + (GA)n Simple_repeat Simple_repeat 2 56 0 1686 238 88 7 chr11 40878779 40879199 -109904354 - MLT2B1 LTR ERVL -66 454 1 404 271 20 33 chr11 40879326 40879477 -109904076 + L1ME LINE L1 490 638 -5892 571 282 78 58 chr11 40879610 40880149 -109903404 + L1ME LINE L1 1268 1813 -4727 258 292 0 0 chr11 40880823 40880895 -109902658 + MLT1-int LTR MaLR 401 472 -899 396 283 9 0 chr11 40881386 40881492 -109902061 - L1MC4 LINE L1 -1219 6823 6717 267 54 0 0 chr11 40881941 40881978 -109901575 + (CA)n Simple_repeat Simple_repeat 1 37 0 715 84 39 13 chr11 40882768 40882922 -109900631 + (TAGA)n Simple_repeat Simple_repeat 2 159 0 669 161 124 7 chr11 40882932 40883069 -109900484 - LTR40a LTR ERVL -366 153 1 22 70 0 0 chr11 40883255 40883298 -109900255 + AT_rich Low_complexity Low_complexity 1 43 0 10485 183 38 14 chr11 40883328 40885875 -109897678 - L1MA6 LINE L1 -6 6294 3809 225 0 0 0 chr11 40885875 40885900 -109897653 + (TTG)n Simple_repeat Simple_repeat 3 27 0 10485 183 38 14 chr11 40885900 40886297 -109897256 - L1MA6 LINE L1 -2491 3809 3423 1979 126 3 20 chr11 40886297 40886591 -109896962 - AluSp SINE Alu -24 289 1 10485 183 38 14 chr11 40886591 40886840 -109896713 - L1MA6 LINE L1 -2877 3423 3181 1787 236 31 9 chr11 40886840 40887263 -109896290 + MSTB1 LTR MaLR 1 432 0 10485 183 38 14 chr11 40887263 40887353 -109896200 - L1MA6 LINE L1 -3119 3181 2924 3994 183 27 10 chr11 40887349 40888332 -109895221 - L1MA4 LINE L1 -251 7468 6473 * 1147 231 51 35 chr11 40888334 40888788 -109894765 - L1MA4 LINE L1 -3957 3608 3148 1838 266 21 22 chr11 40888792 40889468 -109894085 - L1MA4 LINE L1 -4637 2928 2254 781 307 130 22 chr11 40889867 40890466 -109893087 - L1ME2 LINE L1 -25 6139 5476 413 238 28 49 chr11 40890475 40890618 -109892935 - L1PB4 LINE L1 -6 6150 6011 675 234 88 87 chr11 40890625 40891150 -109892403 - L1ME2 LINE L1 -675 5487 4971 209 231 33 22 chr11 40891158 40891249 -109892304 + (TA)n Simple_repeat Simple_repeat 2 93 0 243 333 48 12 chr11 40891249 40891414 -109892139 - L1ME2 LINE L1 -1207 4939 4769 28 61 0 0 chr11 40891694 40891743 -109891810 + AT_rich Low_complexity Low_complexity 1 49 0 1356 247 46 56 chr11 40892091 40892593 -109890960 + MLT1D LTR MaLR 9 505 0 2130 101 14 0 chr11 40892893 40893180 -109890373 + AluSg SINE Alu 1 291 -19 264 77 0 0 chr11 40894808 40894847 -109888706 + (TG)n Simple_repeat Simple_repeat 2 40 0 341 286 79 14 chr11 40895056 40895196 -109888357 + MIR SINE MIR 113 261 -1 2233 94 0 0 chr11 40896311 40896597 -109886956 + AluSg SINE Alu 9 294 -16 20651 158 22 13 chr11 40896850 40904388 -109879165 + L1MA3 LINE L1 17 7724 0 384 281 81 36 chr11 40904639 40904836 -109878717 - L2 LINE L2 0 3313 3104 276 30 0 0 chr11 40904836 40904869 -109878684 + (TG)n Simple_repeat Simple_repeat 1 33 0 384 281 81 36 chr11 40904869 40904892 -109878661 - L2 LINE L2 -209 3104 3083 1260 328 57 11 chr11 40904942 40905503 -109878050 - L2 LINE L2 -781 2533 1947 2314 164 93 73 chr11 40905987 40906589 -109876964 + LTR18B LTR ERVL 1 614 0 234 327 19 37 chr11 40906858 40906965 -109876588 + L2 LINE L2 3164 3268 -4 23 0 0 0 chr11 40907580 40907603 -109875950 + AT_rich Low_complexity Low_complexity 1 23 0 250 205 12 36 chr11 40907712 40907795 -109875758 + A-rich Low_complexity Low_complexity 3 83 0 285 316 53 53 chr11 40908849 40908963 -109874590 + MIR SINE MIR 58 174 -88 2207 119 36 30 chr11 40908963 40909325 -109874228 + THE1B LTR MaLR 1 364 0 285 316 53 53 chr11 40909325 40909397 -109874156 + MIR SINE MIR 173 244 -18 313 222 139 19 chr11 40909793 40909901 -109873652 + MIR SINE MIR 127 247 -15 222 267 198 0 chr11 40911121 40911207 -109872346 - MER5A DNA MER1_type -77 112 10 851 181 39 34 chr11 40911228 40911432 -109872121 + MER3 DNA MER1_type 5 209 0 689 220 83 0 chr11 40911640 40911808 -109871745 + MIR SINE MIR 49 230 -32 553 211 88 4 chr11 40911898 40912136 -109871417 - L1ME2 LINE L1 -14 6150 5847 759 206 92 32 chr11 40912142 40912360 -109871193 - L1ME2 LINE L1 -362 5802 5572 1592 236 62 24 chr11 40912367 40912867 -109870686 + LTR40a LTR ERVL 1 519 0 596 289 17 60 chr11 40913028 40913260 -109870293 + HERVL40 LTR ERVL 198 419 -5111 1109 139 29 2 chr11 40913739 40914031 -109869522 + THE1C LTR MaLR 1 375 0 3366 323 30 33 chr11 40914076 40915374 -109868179 + HERVL40 LTR ERVL 1593 2886 -2644 1212 247 7 27 chr11 40915374 40915674 -109867879 + HERVL40 LTR ERVL 3009 3302 -2228 466 312 67 18 chr11 40915740 40916022 -109867531 - L1ME2 LINE L1 -1012 5134 4839 26 0 0 0 chr11 40916031 40916057 -109867496 + AT_rich Low_complexity Low_complexity 1 26 0 522 156 10 0 chr11 40916173 40916269 -109867284 + L1PBa LINE L1 2788 2884 -3979 * 1960 170 6 99 chr11 40916265 40916759 -109866794 + L1 LINE L1 3016 3463 -3399 29 101 0 0 chr11 40916975 40917074 -109866479 + AT_rich Low_complexity Low_complexity 1 99 0 1796 172 38 0 chr11 40917515 40917887 -109865666 - L1MA4 LINE L1 -4 6296 5911 232 294 25 34 chr11 40918500 40918619 -109864934 + GA-rich Low_complexity Low_complexity 4 121 0 2418 38 6 19 chr11 40918887 40919200 -109864353 + AluY SINE Alu 1 309 -2 3626 109 19 2 chr11 40919895 40920425 -109863128 + L1PA10 LINE L1 5624 6162 -6 392 305 87 92 chr11 40920465 40921065 -109862488 - HAL1 LINE L1 -47 2460 1864 438 284 121 16 chr11 40921072 40921262 -109862291 + HAL1 LINE L1 981 1190 -1317 228 358 0 37 chr11 40921589 40921698 -109861855 - L2 LINE L2 -213 3059 2955 22 0 0 0 chr11 40923237 40923259 -109860294 + AT_rich Low_complexity Low_complexity 1 22 0 3043 54 0 3 chr11 40923337 40923725 -109859828 - L1PA4 LINE L1 0 6155 5769 871 0 0 0 chr11 40923725 40923822 -109859731 + L1PA4 LINE L1 5696 5792 -363 209 306 61 10 chr11 40923834 40923932 -109859621 - MIR SINE MIR -56 206 104 465 298 135 14 chr11 40923944 40924159 -109859394 + MIR SINE MIR 13 253 -9 192 341 12 35 chr11 40924168 40924253 -109859300 - MIR SINE MIR -160 102 20 1636 99 12 56 chr11 40925049 40925301 -109858252 - AluSg SINE Alu -16 294 54 245 342 61 56 chr11 40925520 40925716 -109857837 - L2 LINE L2 -969 2345 2149 769 266 104 29 chr11 40926096 40926586 -109856967 - MLT2E LTR ERVL -4 624 10 351 0 0 0 chr11 40926673 40926712 -109856841 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1614 174 4 4 chr11 40926838 40927102 -109856451 - AluJb SINE Alu -38 274 11 730 147 0 20 chr11 40928377 40928527 -109855026 + (GAAA)n Simple_repeat Simple_repeat 2 148 0 3482 22 0 2 chr11 40928942 40929356 -109854197 - L1PA2 LINE L1 -1 6154 5742 6376 138 86 29 chr11 40929356 40930597 -109852956 + L1PA7 LINE L1 2760 3929 -2225 23 0 0 0 chr11 40930597 40930620 -109852933 + AT_rich Low_complexity Low_complexity 1 23 0 6376 138 86 29 chr11 40930620 40930716 -109852837 + L1PA7 LINE L1 3929 4018 -2136 34 0 0 0 chr11 40930716 40930750 -109852803 + AT_rich Low_complexity Low_complexity 1 34 0 6376 138 86 29 chr11 40930750 40932466 -109851087 + L1PA7 LINE L1 4018 6150 -4 1230 146 0 0 chr11 40933128 40933313 -109850240 + AluY SINE Alu 105 289 -22 21 36 0 0 chr11 40933412 40933440 -109850113 + AT_rich Low_complexity Low_complexity 1 28 0 373 250 79 72 chr11 40934748 40934900 -109848653 - MIR3 SINE MIR -38 170 18 23 0 0 29 chr11 40935781 40935798 -109847755 + AT_rich Low_complexity Low_complexity 1 17 -16 1937 113 3 27 chr11 40935798 40936091 -109847462 - AluSg SINE Alu -24 286 1 23 0 0 29 chr11 40936091 40936107 -109847446 + AT_rich Low_complexity Low_complexity 17 33 0 24 53 0 0 chr11 40936454 40936492 -109847061 + AT_rich Low_complexity Low_complexity 1 38 0 219 178 27 27 chr11 40936638 40936711 -109846842 + (TA)n Simple_repeat Simple_repeat 1 73 0 205 300 0 14 chr11 40937081 40937151 -109846402 + GA-rich Low_complexity Low_complexity 2 70 0 1450 212 37 3 chr11 40937604 40937953 -109845600 - L1MA8 LINE L1 -7 6284 5924 2341 151 5 51 chr11 40937953 40938004 -109845549 - MSTA LTR MaLR 0 428 376 2194 106 7 0 chr11 40938004 40938297 -109845256 - AluSp SINE Alu -16 297 3 2341 151 5 51 chr11 40938297 40938694 -109844859 - MSTA LTR MaLR -52 376 1 1211 122 37 11 chr11 40938695 40938884 -109844669 - MSTA LTR MaLR -234 194 1 8141 207 18 11 chr11 40938884 40940447 -109843106 - MSTA-int LTR MaLR 0 1651 79 2388 164 25 2 chr11 40940447 40940843 -109842710 - MSTA LTR MaLR -23 405 1 1401 204 7 7 chr11 40940843 40941127 -109842426 - L1MA8 LINE L1 -363 5928 5645 268 336 10 0 chr11 40941127 40941231 -109842322 - Tigger5 DNA MER2_type 0 2323 2219 3446 214 26 6 chr11 40941280 40942383 -109841170 - L1MA8 LINE L1 -665 5647 4518 1750 188 57 31 chr11 40942386 40942924 -109840629 + MLT2A2 LTR ERVL 1 554 0 1300 179 84 3 chr11 40942928 40943225 -109840328 - L1MA8 LINE L1 -1629 4517 4197 1109 268 151 22 chr11 40943227 40944223 -109839330 + L1M4c LINE L1 1522 2664 -3718 288 146 17 67 chr11 40944227 40944405 -109839148 + (TA)n Simple_repeat Simple_repeat 1 169 0 5918 231 44 32 chr11 40944405 40946167 -109837386 + L1M4c LINE L1 2683 4465 -1917 24 53 0 0 chr11 40946215 40946253 -109837300 + AT_rich Low_complexity Low_complexity 1 38 0 1374 206 18 18 chr11 40947247 40947565 -109835988 + AluJo SINE Alu 1 318 0 22 35 0 0 chr11 40949285 40949314 -109834239 + AT_rich Low_complexity Low_complexity 1 29 0 1435 200 51 51 chr11 40949716 40950106 -109833447 + MLT1B LTR MaLR 1 390 0 1584 227 69 87 chr11 40950763 40951327 -109832226 + MLT2B3 LTR ERVL 1 554 0 245 362 107 12 chr11 40951384 40951627 -109831926 + L2 LINE L2 389 654 -2660 2573 178 8 6 chr11 40951719 40952209 -109831344 - L1MB3 LINE L1 -4 6179 5689 185 138 0 0 chr11 40952570 40952599 -109830954 + L2 LINE L2 3285 3313 0 23 0 0 0 chr11 40953585 40953608 -109829945 + AT_rich Low_complexity Low_complexity 1 23 0 2006 134 3 3 chr11 40953679 40954006 -109829547 - AluSq SINE Alu 0 327 1 228 282 51 0 chr11 40954011 40954089 -109829464 - L2 LINE L2 -12 3301 3220 892 256 9 5 chr11 40954204 40954423 -109829130 - MER58A DNA MER1_type 0 224 5 192 396 65 0 chr11 40954580 40954734 -109828819 + MIR SINE MIR 52 215 -47 834 309 26 8 chr11 40954748 40955013 -109828540 - HERV16 LTR ERVL -2538 3116 2847 1087 306 83 30 chr11 40955170 40955710 -109827843 - HERV16 LTR ERVL -4157 839 271 538 329 118 24 chr11 40955953 40956333 -109827220 - LTR16A LTR ERVL -7 443 28 25 65 0 0 chr11 40957729 40957775 -109825778 + AT_rich Low_complexity Low_complexity 1 46 0 21 36 0 0 chr11 40957869 40957897 -109825656 + AT_rich Low_complexity Low_complexity 1 28 0 519 308 75 9 chr11 40957910 40958124 -109825429 - MIR SINE MIR -10 252 25 25 31 0 0 chr11 40958124 40958156 -109825397 + AT_rich Low_complexity Low_complexity 1 32 0 426 207 52 43 chr11 40958766 40958882 -109824671 + Charlie5 DNA MER1_type 1 117 -2495 22 35 0 0 chr11 40958882 40958911 -109824642 + AT_rich Low_complexity Low_complexity 1 29 0 1176 241 114 33 chr11 40959041 40959531 -109824022 + L1ME1 LINE L1 5618 6147 -19 851 276 91 13 chr11 40959552 40960081 -109823472 + L1MB1 LINE L1 2590 3159 -2987 7359 211 39 27 chr11 40960085 40962225 -109821328 + L1MB1 LINE L1 3318 5496 -672 2103 95 0 16 chr11 40962225 40962541 -109821012 + AluY SINE Alu 1 311 0 7359 211 39 27 chr11 40962541 40963186 -109820367 + L1MB1 LINE L1 5496 6131 -37 825 164 34 0 chr11 40963201 40963347 -109820206 + Tigger5 DNA MER2_type 2153 2303 -20 252 151 57 0 chr11 40963366 40963419 -109820134 + L1MA10 LINE L1 6271 6326 -8 4039 162 16 55 chr11 40963572 40964429 -109819124 - L1PB4 LINE L1 0 6156 5333 738 113 81 16 chr11 40964417 40964541 -109819012 - L1PA16 LINE L1 -310 5856 5725 * 5069 220 34 7 chr11 40964621 40965497 -109818056 - L1PB4 LINE L1 -842 5304 4382 369 93 0 0 chr11 40965497 40965551 -109818002 + (TG)n Simple_repeat Simple_repeat 2 55 0 5069 220 34 7 chr11 40965551 40965932 -109817621 - L1PB4 LINE L1 -1764 4382 4013 240 308 101 14 chr11 40966141 40966417 -109817136 + L1ME2 LINE L1 4826 5125 -1021 2113 242 96 26 chr11 40966498 40967345 -109816208 + L1ME2 LINE L1 5277 6164 0 232 333 82 0 chr11 40967352 40967487 -109816066 - L2 LINE L2 -956 2358 2213 528 30 0 0 chr11 40967908 40967974 -109815579 + (TA)n Simple_repeat Simple_repeat 1 66 0 475 214 26 0 chr11 40968988 40969105 -109814448 + L1MC1 LINE L1 6208 6327 -6 29 28 0 0 chr11 40969295 40969331 -109814222 + AT_rich Low_complexity Low_complexity 1 36 0 222 237 246 35 chr11 40970105 40970219 -109813334 + MIR3 SINE MIR 4 141 -67 21 71 0 0 chr11 40971076 40971118 -109812435 + AT_rich Low_complexity Low_complexity 1 42 0 279 254 36 18 chr11 40971643 40971753 -109811800 + (TAGA)n Simple_repeat Simple_repeat 2 113 0 216 0 0 0 chr11 40971869 40971893 -109811660 + (T)n Simple_repeat Simple_repeat 1 24 0 37 23 0 0 chr11 40973058 40973102 -109810451 + AT_rich Low_complexity Low_complexity 1 44 0 6833 262 122 59 chr11 40974297 40976010 -109807543 - LTR52-int LTR ERVL -205 3351 1748 1226 222 57 72 chr11 40976010 40976523 -109807030 - MLT1D LTR MaLR 0 505 1 6833 262 122 59 chr11 40976523 40977958 -109805595 - LTR52-int LTR ERVL -1808 1748 3 454 189 9 54 chr11 40977998 40978046 -109805507 - LTR52 LTR ERVL -41 380 331 1167 262 2 60 chr11 40978046 40978443 -109805110 - MLT1A2 LTR MaLR 0 374 1 454 189 9 54 chr11 40978443 40978505 -109805048 - LTR52 LTR ERVL -90 331 275 297 245 27 136 chr11 40978574 40978721 -109804832 + MLT1H LTR MaLR 382 512 -37 32 0 0 0 chr11 40979226 40979258 -109804295 + AT_rich Low_complexity Low_complexity 1 32 0 2393 67 3 0 chr11 40980153 40980453 -109803100 - AluY SINE Alu -10 301 1 359 372 44 31 chr11 40981254 40981547 -109802006 + L2 LINE L2 1801 2097 -1217 916 172 11 111 chr11 40983487 40983766 -109799787 - L1MB8 LINE L1 0 6178 5928 1552 228 0 3 chr11 40983785 40984119 -109799434 - L1MA6 LINE L1 -238 6062 5730 218 360 13 0 chr11 40984171 40984246 -109799307 + MIR3 SINE MIR 84 159 -49 2431 70 0 0 chr11 40984395 40984695 -109798858 + AluY SINE Alu 1 300 -11 199 292 97 0 chr11 40985452 40985524 -109798029 - MIR SINE MIR -27 235 157 368 119 30 99 chr11 40986699 40986769 -109796784 - L1PA11 LINE L1 -3 6171 6109 2391 144 6 0 chr11 40986769 40987131 -109796422 + THE1B LTR MaLR 1 364 0 368 119 30 99 chr11 40987131 40987161 -109796392 - L1PA11 LINE L1 -65 6109 6078 2574 87 2 174 chr11 40987161 40987701 -109795852 + THE1B-int LTR MaLR 32 478 -1102 207 139 0 0 chr11 40987969 40988005 -109795548 + (TG)n Simple_repeat Simple_repeat 1 36 0 505 243 40 34 chr11 40988170 40988318 -109795235 - MIR SINE MIR -112 150 2 26 0 0 0 chr11 40988674 40988700 -109794853 + AT_rich Low_complexity Low_complexity 1 26 0 3007 126 2 9 chr11 40989054 40989498 -109794055 + MLT2A2 LTR ERVL 1 441 -12 312 335 78 24 chr11 40989861 40990067 -109793486 - MIR SINE MIR -26 236 20 317 265 61 75 chr11 40990495 40990642 -109792911 - MIR SINE MIR -69 193 49 1684 169 29 0 chr11 40991002 40991280 -109792273 - AluJb SINE Alu -26 286 1 481 67 13 13 chr11 40991751 40991826 -109791727 + (TTCC)n Simple_repeat Simple_repeat 4 78 0 4605 209 67 36 chr11 40991883 40992908 -109790645 - L1MA10 LINE L1 0 6334 5342 189 74 0 0 chr11 40992908 40992935 -109790618 + (TTA)n Simple_repeat Simple_repeat 1 27 0 4605 209 67 36 chr11 40992935 40994279 -109789274 - L1MA10 LINE L1 -992 5342 3894 650 307 73 58 chr11 40994421 40994508 -109789045 - LTR16C LTR ERVL 0 491 407 2131 195 42 2 chr11 40994508 40994918 -109788635 - MSTB LTR MaLR 0 426 1 650 307 73 58 chr11 40994918 40995159 -109788394 - LTR16C LTR ERVL -84 407 158 253 271 6 83 chr11 40995406 40995587 -109787966 + L1MDa LINE L1 235 401 -6139 1440 196 54 8 chr11 40996036 40996409 -109787144 + L1MDa LINE L1 1623 2012 -4528 259 343 9 0 chr11 40996579 40996681 -109786872 + MLT1I LTR MaLR 1 103 -306 376 284 63 0 chr11 40996681 40996808 -109786745 - MLT1H LTR MaLR 0 549 415 235 108 27 0 chr11 40997043 40997080 -109786473 + L1MA4 LINE L1 6177 6214 -86 425 360 40 23 chr11 40997377 40997677 -109785876 + HERV16 LTR ERVL 1665 1969 -3027 267 315 102 8 chr11 40997717 40997844 -109785709 + L2 LINE L2 2611 2749 -565 752 295 70 56 chr11 40997847 40998078 -109785475 - L1MDa LINE L1 -4470 1610 1384 2150 100 0 28 chr11 40998078 40998398 -109785155 - AluY SINE Alu 0 311 1 2388 99 3 0 chr11 40998401 40998713 -109784840 - AluSp SINE Alu 0 313 1 752 295 70 56 chr11 40998713 40999292 -109784261 - L1MDa LINE L1 -4697 1383 810 407 159 35 0 chr11 40999292 40999405 -109784148 + (TA)n Simple_repeat Simple_repeat 2 118 0 1260 303 70 39 chr11 40999406 41000182 -109783371 - L1MDa LINE L1 -5269 801 2 269 396 71 5 chr11 41000193 41000390 -109783163 + L2 LINE L2 2762 2971 -343 2406 188 40 30 chr11 41000403 41000946 -109782607 + LTR60 LTR ERV1 1 549 -37 351 200 82 67 chr11 41000838 41000973 -109782580 + TAR1 Satellite telomeric 49 185 -1926 * 1001 234 77 29 chr11 41001258 41001570 -109781983 + LTR60-int LTR ERV1 1081 1407 -3391 581 256 71 42 chr11 41002111 41002403 -109781150 + LTR60-int LTR ERV1 1543 1828 -5263 2498 244 45 20 chr11 41002420 41003587 -109779966 + LTR60-int LTR ERV1 2595 4038 -842 348 340 33 38 chr11 41004492 41004860 -109778693 + LTR60-int LTR ERV1 6085 6450 -226 2646 196 7 37 chr11 41005104 41005677 -109777876 + LTR60 LTR ERV1 1 556 -30 2204 82 6 25 chr11 41005940 41006255 -109777298 - AluY SINE Alu -1 310 2 300 159 46 0 chr11 41006478 41006551 -109777002 - L1MB8 LINE L1 -10 6174 6100 1608 219 99 67 chr11 41006777 41007312 -109776241 + MLT2B3 LTR ERVL 3 554 0 28 48 0 0 chr11 41007512 41007554 -109775999 + AT_rich Low_complexity Low_complexity 1 42 0 24 67 0 0 chr11 41008555 41008600 -109774953 + AT_rich Low_complexity Low_complexity 1 45 0 206 121 0 0 chr11 41009473 41009506 -109774047 + (T)n Simple_repeat Simple_repeat 1 33 0 1847 138 3 7 chr11 41009885 41010174 -109773379 + AluSx SINE Alu 1 288 -24 23 68 0 0 chr11 41010241 41010285 -109773268 + AT_rich Low_complexity Low_complexity 1 44 0 338 268 202 25 chr11 41010299 41010497 -109773056 - MIR SINE MIR -21 241 9 2303 115 0 0 chr11 41011056 41011368 -109772185 + AluSx SINE Alu 1 312 0 233 209 0 0 chr11 41011712 41011755 -109771798 - L1 LINE L1 -1390 4756 4714 935 223 14 0 chr11 41011852 41012067 -109771486 - L1 LINE L1 -1390 4756 4539 211 374 89 0 chr11 41012124 41012247 -109771306 + L2 LINE L2 3179 3312 -1 26 50 0 0 chr11 41012554 41012594 -109770959 + AT_rich Low_complexity Low_complexity 1 40 0 1875 165 50 70 chr11 41012882 41013081 -109770472 + MLT2A2 LTR ERVL 1 202 -352 1920 160 0 3 chr11 41013081 41013381 -109770172 + AluSx SINE Alu 6 304 -8 1875 165 50 70 chr11 41013381 41013735 -109769818 + MLT2A2 LTR ERVL 202 554 0 264 206 39 63 chr11 41013740 41013893 -109769660 + MLT1B LTR MaLR 1 203 -187 2250 105 3 0 chr11 41013893 41014197 -109769356 + AluSp SINE Alu 1 305 -8 264 206 39 63 chr11 41014197 41014261 -109769292 + MLT1B LTR MaLR 203 267 -123 321 100 0 0 chr11 41014449 41014499 -109769054 + (GGA)n Simple_repeat Simple_repeat 3 52 0 754 308 112 66 chr11 41014529 41015090 -109768463 + MLT1E LTR MaLR 3 589 -4 384 251 82 35 chr11 41015332 41015503 -109768050 + L1ME LINE L1 854 1032 -5173 25 31 0 0 chr11 41015514 41015546 -109768007 + AT_rich Low_complexity Low_complexity 1 32 0 256 278 87 52 chr11 41015618 41015791 -109767762 + L1ME LINE L1 1143 1321 -4896 245 231 0 0 chr11 41015939 41016004 -109767549 + L1ME LINE L1 1754 1818 -4578 316 329 14 41 chr11 41016064 41016210 -109767343 + L1ME LINE L1 1914 2055 -4341 300 176 0 0 chr11 41016237 41016305 -109767248 + GA-rich Low_complexity Low_complexity 1 68 0 234 214 45 11 chr11 41016307 41016396 -109767157 + L1ME LINE L1 2199 2290 -4106 474 195 62 55 chr11 41016594 41016769 -109766784 - L1ME2 LINE L1 -130 6034 5843 2267 99 3 0 chr11 41016844 41017146 -109766407 - AluSq SINE Alu -10 303 1 944 153 79 61 chr11 41017618 41017847 -109765706 - L1MA8 LINE L1 -162 6129 5897 405 204 40 79 chr11 41017840 41017992 -109765561 + L1MA8 LINE L1 6105 6250 -41 * 44 35 0 0 chr11 41018446 41018504 -109765049 + AT_rich Low_complexity Low_complexity 1 58 0 540 259 155 7 chr11 41019594 41019884 -109763669 - MER69 DNA AcHobo -186 2340 2008 664 285 79 87 chr11 41019898 41020418 -109763135 - MER69 DNA AcHobo -1984 542 27 16144 140 22 22 chr11 41020616 41021062 -109762491 + Tigger4(Zombi) DNA MER2_type 12 457 -2274 2214 137 0 0 chr11 41021062 41021375 -109762178 + AluSq SINE Alu 1 313 0 16144 140 22 22 chr11 41021375 41023648 -109759905 + Tigger4(Zombi) DNA MER2_type 456 2731 0 207 333 87 7 chr11 41024113 41024251 -109759302 - MIR SINE MIR -8 254 106 186 339 0 17 chr11 41025241 41025300 -109758253 - L2 LINE L2 0 3272 3215 237 178 0 0 chr11 41025940 41025985 -109757568 + (TG)n Simple_repeat Simple_repeat 1 45 0 26 0 0 0 chr11 41026483 41026509 -109757044 + AT_rich Low_complexity Low_complexity 1 26 0 214 357 102 6 chr11 41027202 41027359 -109756194 - MIR SINE MIR -17 245 74 2211 120 0 3 chr11 41027402 41027703 -109755850 - AluSp SINE Alu -13 300 1 1366 203 6 63 chr11 41027940 41028256 -109755297 + AluJo SINE Alu 1 298 -14 240 35 0 0 chr11 41028914 41028943 -109754610 + (A)n Simple_repeat Simple_repeat 1 29 0 2008 101 4 0 chr11 41029012 41029280 -109754273 - AluSg SINE Alu -11 299 31 588 326 54 8 chr11 41029545 41029784 -109753769 + MIR SINE MIR 5 254 -8 1864 214 22 7 chr11 41030903 41031360 -109752193 - L1 LINE L1 -1300 4846 4383 5087 148 40 16 chr11 41031365 41032500 -109751053 + L1PA16 LINE L1 5008 6166 0 334 114 57 0 chr11 41032584 41032672 -109750881 + (TA)n Simple_repeat Simple_repeat 1 93 0 35 63 0 0 chr11 41034733 41034796 -109748757 + AT_rich Low_complexity Low_complexity 1 63 0 1930 146 14 88 chr11 41035885 41036317 -109747236 + L1MA4 LINE L1 5896 6295 -5 30 77 0 0 chr11 41036364 41036429 -109747124 + AT_rich Low_complexity Low_complexity 1 65 0 1987 110 68 42 chr11 41036651 41037006 -109746547 - THE1B LTR MaLR 0 364 1 182 293 36 120 chr11 41037224 41037391 -109746162 - MER5A DNA MER1_type -1 188 36 1639 196 45 15 chr11 41037704 41038036 -109745517 + MLT1A1 LTR MaLR 24 365 0 1842 188 12 12 chr11 41039076 41039422 -109744131 + MER44D DNA MER2_type 184 584 -21 2665 99 8 0 chr11 41040931 41041303 -109742250 - THE1C LTR MaLR 0 375 1 24 53 0 0 chr11 41042030 41042068 -109741485 + AT_rich Low_complexity Low_complexity 1 38 0 23 33 0 0 chr11 41042345 41042375 -109741178 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr11 41042484 41042512 -109741041 + AT_rich Low_complexity Low_complexity 1 28 0 28 0 0 0 chr11 41042541 41042569 -109740984 + AT_rich Low_complexity Low_complexity 1 28 0 881 120 20 33 chr11 41042825 41042975 -109740578 + AluSg/x SINE Alu 165 312 0 3268 196 64 24 chr11 41043880 41044674 -109738879 - LTR1B LTR ERV1 0 826 1 23 54 0 0 chr11 41045412 41045449 -109738104 + AT_rich Low_complexity Low_complexity 1 37 0 233 283 22 36 chr11 41045485 41045581 -109737972 - MIR SINE MIR -103 105 37 576 266 94 107 chr11 41046305 41047046 -109736507 - L2 LINE L2 0 3313 2593 250 49 82 0 chr11 41047676 41047737 -109735816 + (TA)n Simple_repeat Simple_repeat 2 67 0 3043 222 22 32 chr11 41047737 41048520 -109735033 + L1PA15 LINE L1 3863 4637 -1509 5405 137 20 2 chr11 41048640 41049968 -109733585 + L1PA15 LINE L1 4821 6163 -2 2111 82 13 26 chr11 41050262 41050565 -109732988 + AluSx SINE Alu 1 299 -13 227 265 24 12 chr11 41050713 41050796 -109732757 + (TA)n Simple_repeat Simple_repeat 2 85 0 1758 135 12 0 chr11 41050961 41051220 -109732333 + AluSx SINE Alu 39 300 -12 186 329 49 0 chr11 41051306 41051388 -109732165 + L2 LINE L2 3220 3305 -8 21 0 0 0 chr11 41052552 41052573 -109730980 + AT_rich Low_complexity Low_complexity 1 21 0 317 262 36 0 chr11 41052708 41052792 -109730761 + CT-rich Low_complexity Low_complexity 1 87 0 519 258 0 0 chr11 41052855 41052975 -109730578 - FLAM_A SINE Alu -13 120 1 201 139 0 0 chr11 41053353 41053396 -109730157 + (CATA)n Simple_repeat Simple_repeat 2 44 0 6408 83 22 2 chr11 41053521 41054694 -109728859 + L1PA8 LINE L1 4974 6164 -8 778 289 28 14 chr11 41055321 41055532 -109728021 + MER58A DNA MER1_type 2 215 -9 802 185 14 7 chr11 41055669 41055815 -109727738 + FRAM SINE Alu 17 163 -13 425 244 0 0 chr11 41055825 41055907 -109727646 - MLT1F LTR MaLR -103 439 358 409 333 27 7 chr11 41055935 41056085 -109727468 - MLT1F LTR MaLR -389 153 1 722 283 9 35 chr11 41056258 41056488 -109727065 + MER58A DNA MER1_type 1 224 0 387 0 0 0 chr11 41056638 41056681 -109726872 + (CA)n Simple_repeat Simple_repeat 1 43 0 298 335 137 5 chr11 41057768 41057965 -109725588 - MIR SINE MIR -10 252 30 23 33 0 0 chr11 41059024 41059054 -109724499 + AT_rich Low_complexity Low_complexity 1 30 0 2530 192 29 50 chr11 41059096 41059711 -109723842 - MER7C DNA MER2_type 0 602 1 1659 178 64 3 chr11 41060053 41060367 -109723186 + MER1B DNA MER1_type 5 337 0 213 232 14 0 chr11 41060510 41060579 -109722974 + (TTTAA)n Simple_repeat Simple_repeat 3 72 0 226 266 106 62 chr11 41060899 41061012 -109722541 - L2 LINE L2 -31 3282 3165 2454 190 51 42 chr11 41061389 41061936 -109721617 - MLT2B3 LTR ERVL -2 552 1 23 0 0 0 chr11 41062197 41062220 -109721333 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr11 41062316 41062338 -109721215 + AT_rich Low_complexity Low_complexity 1 22 0 455 349 71 42 chr11 41062650 41063131 -109720422 + HAL1b LINE L1 76 570 -778 248 335 47 24 chr11 41063199 41063411 -109720142 + HAL1b LINE L1 680 896 -452 3964 126 43 52 chr11 41063496 41064288 -109719265 + LTR1 LTR ERV1 1 785 0 273 301 113 43 chr11 41064656 41065333 -109718220 + L1ME LINE L1 5041 5764 -406 290 26 26 0 chr11 41065355 41065394 -109718159 + (TA)n Simple_repeat Simple_repeat 1 40 0 1442 220 3 25 chr11 41065395 41065709 -109717844 - AluJo SINE Alu -5 307 1 776 319 106 24 chr11 41065965 41066539 -109717014 + L1MC4a LINE L1 5303 5923 -1885 404 267 61 6 chr11 41066665 41066845 -109716708 + L1M4 LINE L1 3317 3506 -2640 323 301 79 64 chr11 41067715 41068120 -109715433 + L1ME LINE L1 541 951 -5119 26 0 0 0 chr11 41069108 41069134 -109714419 + AT_rich Low_complexity Low_complexity 1 26 0 2120 151 16 19 chr11 41070344 41070709 -109712844 - THE1B LTR MaLR 0 364 1 21 0 0 0 chr11 41070896 41070917 -109712636 + AT_rich Low_complexity Low_complexity 1 21 0 6632 73 3 0 chr11 41070917 41072067 -109711486 - L1PA6 LINE L1 0 6154 5017 1475 146 45 0 chr11 41072171 41072417 -109711136 + Tigger4(Zombi) DNA MER2_type 212 468 -2263 505 242 0 0 chr11 41072418 41072517 -109711036 + AluS SINE Alu 1 99 -214 12608 78 5 0 chr11 41072517 41074218 -109709335 - L1P LINE L1 -1232 4914 3205 210 37 0 0 chr11 41074218 41074245 -109709308 + (A)n Simple_repeat Simple_repeat 1 27 0 4051 156 5 38 chr11 41074354 41075125 -109708428 - L1P LINE L1 -2524 3622 2877 12957 153 25 34 chr11 41075339 41076301 -109707252 - Tigger1 DNA MER2_type 0 2418 1450 1617 122 93 11 chr11 41076301 41076580 -109706973 - AluSx SINE Alu -10 302 1 12957 153 25 34 chr11 41076580 41078054 -109705499 - Tigger1 DNA MER2_type -968 1450 2 354 171 0 0 chr11 41078623 41078693 -109704860 + (TG)n Simple_repeat Simple_repeat 1 70 0 2802 198 70 8 chr11 41078955 41079542 -109704011 - MER67B LTR ERV1 0 661 39 522 251 48 69 chr11 41079686 41079917 -109703636 + MLT1F LTR MaLR 317 542 0 297 310 146 0 chr11 41081002 41081160 -109702393 + MIR SINE MIR 58 238 -24 23 0 0 0 chr11 41081725 41081748 -109701805 + AT_rich Low_complexity Low_complexity 1 23 0 2025 159 71 23 chr11 41081891 41082399 -109701154 + MLT2A2 LTR ERVL 1 554 0 1684 158 40 62 chr11 41082944 41083317 -109700236 + MLT1A1 LTR MaLR 1 365 0 5138 186 30 46 chr11 41083451 41085576 -109697977 - L1PB4 LINE L1 -5 6151 4052 182 385 60 28 chr11 41085606 41085824 -109697729 + L2 LINE L2 2311 2535 -779 3180 173 100 16 chr11 41085915 41086622 -109696931 - LTR1B LTR ERV1 -3 782 1 3732 111 33 11 chr11 41086710 41087419 -109696134 + LTR17 LTR ERV1 1 773 -7 1285 224 32 0 chr11 41087450 41087545 -109696008 + AluSx SINE Alu 27 117 -195 459 0 0 0 chr11 41087545 41087596 -109695957 + (CA)n Simple_repeat Simple_repeat 2 52 0 1285 224 32 0 chr11 41087596 41087777 -109695776 + AluSx SINE Alu 117 312 0 2081 60 0 0 chr11 41088151 41088416 -109695137 - AluY SINE Alu -2 309 45 1994 204 34 9 chr11 41088643 41089084 -109694469 - LTR47A LTR ERVL 0 452 1 469 263 35 91 chr11 41089733 41089965 -109693588 + MIR SINE MIR 44 262 0 22 0 0 0 chr11 41090443 41090465 -109693088 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr11 41090544 41090565 -109692988 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr11 41090921 41090945 -109692608 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr11 41091006 41091030 -109692523 + AT_rich Low_complexity Low_complexity 1 24 0 2253 78 0 35 chr11 41091224 41091543 -109692010 + AluY SINE Alu 1 308 -3 310 180 0 0 chr11 41092716 41092777 -109690776 - L1MB1 LINE L1 0 6168 6108 252 224 0 0 chr11 41092776 41092834 -109690719 + L1M2 LINE L1 5827 5884 -428 * 265 348 51 22 chr11 41093799 41093937 -109689616 - MIR SINE MIR -71 191 50 5851 230 29 16 chr11 41094005 41095828 -109687725 - L1MB3 LINE L1 -7 6412 4549 3309 73 77 4 chr11 41095828 41096293 -109687260 - L1PA6 LINE L1 -4 6150 5652 5851 230 29 16 chr11 41096293 41096959 -109686594 - L1MB3 LINE L1 -1870 4549 3893 1395 260 17 3 chr11 41096963 41097309 -109686244 - MLT1A1 LTR MaLR 0 365 15 9116 220 68 40 chr11 41097410 41098255 -109685298 - L1MB3 LINE L1 -2569 3813 2994 1551 84 4 26 chr11 41098255 41098481 -109685072 + L1PA8 LINE L1 5949 6169 -3 9116 220 68 40 chr11 41098481 41100451 -109683102 - L1MB3 LINE L1 -3388 2994 862 1223 280 14 19 chr11 41100451 41100815 -109682738 + MLT1A1 LTR MaLR 4 365 0 9116 220 68 40 chr11 41100815 41101702 -109681851 - L1MB3 LINE L1 -5520 862 2 22 0 0 0 chr11 41102413 41102435 -109681118 + AT_rich Low_complexity Low_complexity 1 22 0 725 243 61 116 chr11 41102463 41102647 -109680906 + MLT2C1 LTR ERVL 1 157 -240 13832 44 13 0 chr11 41102647 41105134 -109678419 - L1PA4 LINE L1 -2 6153 3642 725 243 61 116 chr11 41105134 41105311 -109678242 + MLT2C1 LTR ERVL 157 342 -55 21 71 0 0 chr11 41105465 41105507 -109678046 + AT_rich Low_complexity Low_complexity 1 42 0 371 184 40 17 chr11 41105554 41105728 -109677825 + (TA)n Simple_repeat Simple_repeat 2 179 0 212 247 24 35 chr11 41105729 41105814 -109677739 + (CATATA)n Simple_repeat Simple_repeat 1 84 0 309 250 9 19 chr11 41106007 41106115 -109677438 + (TA)n Simple_repeat Simple_repeat 1 107 0 21 36 0 0 chr11 41106188 41106216 -109677337 + AT_rich Low_complexity Low_complexity 1 28 0 5332 212 43 15 chr11 41106365 41110287 -109673266 + L1MA9 LINE L1 1 3481 -2722 2013 244 10 0 chr11 41110292 41110801 -109672752 + L1MA9 LINE L1 4628 5141 -1062 2279 271 12 19 chr11 41110805 41111577 -109671976 + L1MB7 LINE L1 4540 5305 -841 1359 144 26 91 chr11 41111577 41111917 -109671636 + L1MA9 LINE L1 5994 6311 -1 * 1575 205 114 16 chr11 41111915 41112641 -109670912 + L1MB7 LINE L1 5319 6120 -64 7671 147 9 11 chr11 41112642 41113791 -109669762 + HSMAR2 DNA Mariner 2 1149 -153 2075 112 10 13 chr11 41113791 41114103 -109669450 - AluSp SINE Alu -2 311 1 7671 147 9 11 chr11 41114103 41114253 -109669300 + HSMAR2 DNA Mariner 1149 1298 -4 2230 77 3 10 chr11 41114279 41114576 -109668977 + AluSx SINE Alu 3 297 -15 2774 198 53 36 chr11 41114576 41114992 -109668561 + L1MA9 LINE L1 5167 5575 -794 2378 155 23 35 chr11 41114992 41115383 -109668170 + MSTA LTR MaLR 1 389 -39 2072 106 3 0 chr11 41115383 41115708 -109667845 - AluY SINE Alu 0 326 1 2378 155 23 35 chr11 41115708 41115748 -109667805 + MSTA LTR MaLR 389 428 0 2774 198 53 36 chr11 41115748 41116194 -109667359 + L1MA9 LINE L1 5575 6044 -325 3989 102 13 2 chr11 41116198 41116755 -109666798 - HERVL-A1 LTR ERVL -702 4952 4390 558 99 176 0 chr11 41116861 41116883 -109666670 - MLT2A1 LTR ERVL -18 426 409 365 86 17 0 chr11 41116883 41116941 -109666612 + (TA)n Simple_repeat Simple_repeat 2 60 0 558 99 176 0 chr11 41116941 41117009 -109666544 - MLT2A1 LTR ERVL -35 409 320 31451 97 8 0 chr11 41117011 41121278 -109662275 - HERVL-A1 LTR ERVL -1354 4300 1 2767 107 42 7 chr11 41121278 41121707 -109661846 - MLT2A1 LTR ERVL 0 444 1 22 94 0 0 chr11 41121833 41121897 -109661656 + AT_rich Low_complexity Low_complexity 1 64 0 1686 50 4 38 chr11 41122404 41122642 -109660911 - L1PA5 LINE L1 0 6154 5925 321 68 0 0 chr11 41122850 41122894 -109660659 + (CA)n Simple_repeat Simple_repeat 1 44 0 22 0 0 0 chr11 41123207 41123229 -109660324 + AT_rich Low_complexity Low_complexity 1 22 0 230 20 41 41 chr11 41124791 41124840 -109658713 + (TTA)n Simple_repeat Simple_repeat 3 51 0 2184 148 8 16 chr11 41125833 41126211 -109657342 - L1PA16 LINE L1 -9 6157 5783 477 43 64 43 chr11 41126222 41126363 -109657190 + (TA)n Simple_repeat Simple_repeat 2 145 0 250 153 0 17 chr11 41126368 41126427 -109657126 + LTR66 LTR ERVL 407 464 -146 384 129 0 4 chr11 41126427 41126489 -109657064 - L1PA16 LINE L1 -409 5752 5693 30 45 0 0 chr11 41128229 41128273 -109655280 + AT_rich Low_complexity Low_complexity 1 44 0 5229 153 6 3 chr11 41128275 41129145 -109654408 + L1PA16 LINE L1 5290 6161 -5 2174 89 0 0 chr11 41131169 41131450 -109652103 + AluSq SINE Alu 1 281 -32 381 356 80 5 chr11 41132787 41132975 -109650578 + MIR3 SINE MIR 6 207 -1 189 333 28 62 chr11 41133048 41133192 -109650361 + MIR SINE MIR 51 189 -73 416 335 24 0 chr11 41133971 41134135 -109649418 + MIR SINE MIR 91 258 -4 702 192 7 112 chr11 41134135 41134351 -109649202 + L1PB4 LINE L1 5969 6162 -4 2075 135 3 3 chr11 41134409 41134721 -109648832 - AluSx SINE Alu 0 312 1 210 354 0 68 chr11 41134931 41135092 -109648461 - L2 LINE L2 -233 3039 2890 215 178 22 0 chr11 41137184 41137229 -109646324 + (TA)n Simple_repeat Simple_repeat 2 47 0 345 230 22 65 chr11 41137914 41138029 -109645524 + MER5A DNA MER1_type 4 112 -77 388 275 64 35 chr11 41138270 41138378 -109645175 + MER5B DNA MER1_type 1 117 -61 693 36 0 0 chr11 41138378 41138462 -109645091 + (TA)n Simple_repeat Simple_repeat 2 85 0 388 275 64 35 chr11 41138462 41138524 -109645029 + MER5B DNA MER1_type 117 176 -2 2383 264 72 15 chr11 41138865 41139801 -109643752 - L1M4 LINE L1 -1947 4199 3211 501 222 0 0 chr11 41139805 41139913 -109643640 - L1MCa LINE L1 -4604 1822 1715 189 0 0 0 chr11 41140896 41140917 -109642636 + (CA)n Simple_repeat Simple_repeat 2 22 0 237 356 94 6 chr11 41140979 41141139 -109642414 - MIR SINE MIR -11 251 78 488 339 44 32 chr11 41141310 41141558 -109641995 + MIR SINE MIR 6 256 -6 319 305 57 0 chr11 41141601 41141706 -109641847 - MIR SINE MIR -80 182 72 591 265 22 16 chr11 41141764 41141949 -109641604 + MER5A DNA MER1_type 4 189 0 387 0 0 0 chr11 41142120 41142163 -109641390 + (TG)n Simple_repeat Simple_repeat 2 44 0 1789 158 13 3 chr11 41143310 41143613 -109639940 + AluJo SINE Alu 1 306 -6 3794 210 41 15 chr11 41143751 41144637 -109638916 - L1MB5 LINE L1 -9 6165 5257 249 261 31 15 chr11 41144683 41144748 -109638805 - MIR SINE MIR -82 126 61 189 0 0 0 chr11 41144906 41144927 -109638626 + (TC)n Simple_repeat Simple_repeat 2 22 0 209 270 54 14 chr11 41145019 41145093 -109638460 + MIR SINE MIR 156 232 -30 6394 166 37 13 chr11 41145213 41146482 -109637071 + HSMAR2 DNA Mariner 1 1300 -2 340 195 51 102 chr11 41146532 41146650 -109636903 + L2 LINE L2 3167 3278 -35 224 313 18 13 chr11 41146721 41146836 -109636717 - MIR SINE MIR -59 203 88 1767 135 4 0 chr11 41147346 41147606 -109635947 - AluSq SINE Alu -18 295 35 200 294 11 87 chr11 41147701 41147793 -109635760 + MIR SINE MIR 67 151 -57 377 325 110 26 chr11 41148634 41148760 -109634793 - L1ME LINE L1 -362 5808 5694 7011 61 0 4 chr11 41148760 41149743 -109633810 - L1PA7 LINE L1 0 6154 5174 377 325 110 26 chr11 41149743 41149924 -109633629 - L1ME LINE L1 -476 5694 5475 207 64 85 21 chr11 41151274 41151321 -109632232 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 257 135 19 0 chr11 41151332 41151384 -109632169 + CT-rich Low_complexity Low_complexity 2 54 0 23 33 0 0 chr11 41152284 41152314 -109631239 + AT_rich Low_complexity Low_complexity 1 30 0 248 273 0 11 chr11 41152359 41152447 -109631106 + (CATATA)n Simple_repeat Simple_repeat 4 90 0 725 240 10 51 chr11 41153941 41154137 -109629416 + MLT1A1 LTR MaLR 6 193 -172 941 219 41 0 chr11 41154147 41154343 -109629210 + MLT1A1 LTR MaLR 162 365 0 22 56 0 0 chr11 41154404 41154440 -109629113 + AT_rich Low_complexity Low_complexity 1 36 0 234 105 0 0 chr11 41154593 41154631 -109628922 + (TAGA)n Simple_repeat Simple_repeat 4 41 0 499 205 168 26 chr11 41154653 41154843 -109628710 + L1MD3 LINE L1 6702 6918 -1077 530 308 85 5 chr11 41155064 41155288 -109628265 + L1ME LINE L1 290 531 -5539 213 94 0 0 chr11 41155293 41155325 -109628228 + (CAAAA)n Simple_repeat Simple_repeat 4 35 0 196 143 36 0 chr11 41155377 41155433 -109628120 + (TA)n Simple_repeat Simple_repeat 1 58 0 281 346 0 7 chr11 41155659 41155812 -109627741 + L1M4 LINE L1 3425 3576 -2570 387 116 0 158 chr11 41156210 41156305 -109627248 + MADE1 DNA Mariner 1 80 0 228 35 0 0 chr11 41157301 41157330 -109626223 + (TG)n Simple_repeat Simple_repeat 2 30 0 199 288 119 51 chr11 41157909 41158027 -109625526 - MIR SINE MIR -63 145 20 406 297 74 40 chr11 41158511 41158713 -109624840 + L2 LINE L2 3008 3216 -97 1757 208 75 2 chr11 41158808 41159207 -109624346 - MSTA LTR MaLR 0 428 1 4488 231 44 20 chr11 41159214 41160268 -109623285 - MSTA-int LTR MaLR -58 1593 515 1410 135 153 72 chr11 41160268 41160615 -109622938 - THE1C LTR MaLR 0 375 1 2664 173 42 0 chr11 41160615 41161112 -109622441 - MSTA-int LTR MaLR -1132 519 2 1777 182 103 5 chr11 41161113 41161503 -109622050 - MSTA LTR MaLR 0 428 1 408 118 0 0 chr11 41161761 41161829 -109621724 + (CA)n Simple_repeat Simple_repeat 1 68 0 26 64 0 0 chr11 41162705 41162752 -109620801 + AT_rich Low_complexity Low_complexity 1 47 0 3759 71 4 0 chr11 41162916 41163410 -109620143 - L1PA8 LINE L1 -2 6170 5675 21 71 0 0 chr11 41163477 41163519 -109620034 + AT_rich Low_complexity Low_complexity 1 42 0 23 33 0 0 chr11 41164582 41164612 -109618941 + AT_rich Low_complexity Low_complexity 1 30 0 255 266 101 9 chr11 41167568 41167677 -109615876 + LTR67 LTR ERVL 437 555 -2 331 321 75 21 chr11 41168910 41169097 -109614456 + MER115 DNA AcHobo 45 241 -452 289 293 40 0 chr11 41169318 41169417 -109614136 + MER115 DNA AcHobo 590 692 -1 25 0 0 0 chr11 41170008 41170033 -109613520 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr11 41170211 41170239 -109613314 + AT_rich Low_complexity Low_complexity 1 28 0 322 322 29 29 chr11 41170324 41170498 -109613055 - L1ME LINE L1 -418 5703 5530 2145 83 37 7 chr11 41170500 41170800 -109612753 - AluSg1 SINE Alu 0 309 1 440 277 118 46 chr11 41171883 41172121 -109611432 - MIR SINE MIR -5 257 3 230 367 34 51 chr11 41172222 41172399 -109611154 - MIR3 SINE MIR -1 207 34 2820 33 0 0 chr11 41172866 41173196 -109610357 + L1PA4 LINE L1 5763 6092 -63 399 324 65 37 chr11 41173874 41174195 -109609358 + L1ME4a LINE L1 5637 5966 -155 225 299 287 6 chr11 41175705 41175862 -109607691 - MIR SINE MIR -56 206 6 353 331 28 14 chr11 41175944 41176089 -109607464 + L2 LINE L2 3167 3313 0 1665 222 14 3 chr11 41176585 41176946 -109606607 - MLT1A1 LTR MaLR 0 365 1 983 212 73 40 chr11 41177502 41177555 -109605998 + MLT1C LTR MaLR 36 86 -381 1870 156 0 10 chr11 41177555 41177882 -109605671 + AluSx SINE Alu 1 312 0 983 212 73 40 chr11 41177882 41178102 -109605451 + MLT1C LTR MaLR 86 318 -149 1542 217 35 16 chr11 41178155 41178563 -109604990 + MER61D LTR ERV1 14 501 0 552 196 0 48 chr11 41178576 41178605 -109604948 + MLT1B LTR MaLR 277 306 -84 5567 93 22 4 chr11 41178605 41179371 -109604182 - LTR17 LTR ERV1 0 780 1 552 196 0 48 chr11 41179371 41179490 -109604063 + MLT1B LTR MaLR 306 390 0 335 309 109 38 chr11 41179902 41180112 -109603441 - MIR SINE MIR -17 245 21 346 252 117 9 chr11 41180991 41181102 -109602451 + MIR SINE MIR 14 136 -126 237 65 0 0 chr11 41181367 41181398 -109602155 + (TTA)n Simple_repeat Simple_repeat 1 31 0 392 0 21 0 chr11 41182912 41182960 -109600593 + (CA)n Simple_repeat Simple_repeat 1 49 0 283 251 17 84 chr11 41183596 41183775 -109599778 - L1MC5 LINE L1 -186 7775 7609 22 0 0 0 chr11 41183814 41183836 -109599717 + AT_rich Low_complexity Low_complexity 1 22 0 1112 186 15 0 chr11 41184497 41184696 -109598857 - AluJo SINE Alu -56 256 55 4768 130 35 14 chr11 41184699 41185463 -109598090 + LTR17 LTR ERV1 1 780 0 4803 117 3 23 chr11 41185463 41186167 -109597386 + HERV17 LTR ERV1 2 691 -7935 7642 67 1 4 chr11 41186398 41187360 -109596193 + HERV17 LTR ERV1 1056 2014 -6612 * 10063 64 21 18 chr11 41187345 41188666 -109594887 + HERV17 LTR ERV1 2430 3754 -4872 4871 52 2 3 chr11 41188645 41189258 -109594295 + HERV17 LTR ERV1 5405 6016 -2610 * 2266 78 0 3 chr11 41189283 41189576 -109593977 + HERV17 LTR ERV1 8335 8626 0 4982 132 17 10 chr11 41189576 41190351 -109593202 + LTR17 LTR ERV1 1 780 0 1744 163 36 39 chr11 41190475 41190812 -109592741 - MER1B DNA MER1_type -1 336 1 339 226 2 0 chr11 41191053 41191150 -109592403 - L1MA8 LINE L1 -2 6289 6192 658 299 57 15 chr11 41191173 41191631 -109591922 - L1M4 LINE L1 -2938 3706 3230 2304 160 65 0 chr11 41191633 41192032 -109591521 - MSTB LTR MaLR -1 425 1 459 283 78 37 chr11 41192121 41192555 -109590998 - L1M4 LINE L1 -3630 3014 2605 312 324 7 29 chr11 41192698 41192837 -109590716 - L1M4 LINE L1 -4411 2414 2279 389 290 58 64 chr11 41192879 41193334 -109590219 - L1M4 LINE L1 -4755 2070 1473 1777 209 78 18 chr11 41193434 41193922 -109589631 - L1MD3 LINE L1 -82 7913 7397 237 257 54 0 chr11 41193931 41194005 -109589548 + MLT1G1 LTR MaLR 502 579 -16 26 0 0 0 chr11 41195502 41195528 -109588025 + AT_rich Low_complexity Low_complexity 1 26 0 14281 137 15 30 chr11 41197768 41199504 -109584049 - Tigger1 DNA MER2_type -61 2357 668 1929 129 0 28 chr11 41199504 41199790 -109583763 - AluSg SINE Alu -30 280 3 14281 137 15 30 chr11 41199790 41200448 -109583105 - Tigger1 DNA MER2_type -1750 668 1 203 349 0 0 chr11 41200466 41200532 -109583021 - L2 LINE L2 -589 2725 2660 1577 200 10 3 chr11 41200626 41200926 -109582627 + AluJo SINE Alu 11 312 0 1197 278 119 21 chr11 41201142 41201613 -109581940 + MLT1F LTR MaLR 24 540 -2 380 346 147 21 chr11 41201638 41202120 -109581433 - L2 LINE L2 -962 2352 1810 542 220 30 0 chr11 41202670 41202770 -109580783 + Tigger3(Golem) DNA MER2_type 14 116 -2913 5826 158 77 13 chr11 41203349 41204493 -109579060 - Tigger3b DNA MER2_type -1 1230 14 22 35 0 0 chr11 41204590 41204619 -109578934 + AT_rich Low_complexity Low_complexity 1 29 0 1182 257 126 13 chr11 41204712 41205109 -109578444 - MLT1E2 LTR MaLR -74 552 111 2518 59 3 0 chr11 41207234 41207539 -109576014 + AluY SINE Alu 1 306 -5 268 292 100 17 chr11 41207883 41208003 -109575550 - MIR SINE MIR -25 237 108 1073 331 106 2 chr11 41209710 41210211 -109573342 - MLT1H1 LTR MaLR 0 555 3 3038 93 12 5 chr11 41210379 41210789 -109572764 + MLT2A2 LTR ERVL 1 413 -40 21 36 0 0 chr11 41210805 41210833 -109572720 + AT_rich Low_complexity Low_complexity 1 28 0 244 118 118 0 chr11 41210846 41210897 -109572656 + MLT2A2 LTR ERVL 397 453 0 31568 82 5 23 chr11 41210898 41215167 -109568386 + HERVL-A2 LTR ERVL 2 4195 -1459 1986 96 4 4 chr11 41216487 41216748 -109566805 - AluSg SINE Alu -37 273 13 2436 40 7 3 chr11 41217379 41217675 -109565878 - AluY SINE Alu -14 297 1 20908 192 26 39 chr11 41218213 41220892 -109562661 - L1MA3 LINE L1 -3 7721 5011 1172 61 17 17 chr11 41220892 41221072 -109562481 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 20908 192 26 39 chr11 41221072 41224439 -109559114 - L1MA3 LINE L1 -2713 5011 1797 2421 72 0 10 chr11 41224439 41224744 -109558809 - AluY SINE Alu -9 302 1 20908 192 26 39 chr11 41224744 41226506 -109557047 - L1MA3 LINE L1 -5927 1797 15 182 321 31 44 chr11 41228336 41228495 -109555058 - MIR SINE MIR 0 262 106 550 284 153 60 chr11 41229409 41229860 -109553693 + MLT1G1 LTR MaLR 90 582 -13 26 50 0 0 chr11 41231139 41231179 -109552374 + AT_rich Low_complexity Low_complexity 1 40 0 332 222 11 22 chr11 41231767 41231857 -109551696 + MER96B DNA MER1_type? 142 230 -187 2242 110 0 10 chr11 41232721 41233022 -109550531 + AluSc SINE Alu 1 298 -11 377 151 0 14 chr11 41233022 41233088 -109550465 + GA-rich Low_complexity Low_complexity 6 72 0 312 27 0 0 chr11 41233086 41233123 -109550430 + (TAA)n Simple_repeat Simple_repeat 2 38 0 * 526 205 20 73 chr11 41233123 41233274 -109550279 - MLT1C LTR MaLR -319 148 6 204 306 42 49 chr11 41234993 41235137 -109548416 - L2 LINE L2 -214 3058 2916 238 191 21 0 chr11 41236469 41236521 -109547032 + CT-rich Low_complexity Low_complexity 1 53 0 222 118 0 0 chr11 41236622 41236656 -109546897 + (TA)n Simple_repeat Simple_repeat 2 35 0 286 269 25 67 chr11 41237056 41237175 -109546378 - MIR SINE MIR -113 149 36 285 317 21 41 chr11 41237476 41237621 -109545932 + MIR SINE MIR 65 206 -56 197 365 58 29 chr11 41238713 41238817 -109544736 - MIR SINE MIR -60 148 42 301 291 34 122 chr11 41239952 41240189 -109543364 - MIR SINE MIR -4 258 43 241 304 13 13 chr11 41241846 41241925 -109541628 - MIR SINE MIR -5 257 179 499 313 55 0 chr11 41242215 41242378 -109541175 - MIR SINE MIR -70 192 21 21 0 0 0 chr11 41242870 41242891 -109540662 + AT_rich Low_complexity Low_complexity 1 21 0 32 57 0 0 chr11 41243573 41243626 -109539927 + AT_rich Low_complexity Low_complexity 1 53 0 1313 290 57 28 chr11 41243946 41244522 -109539031 - MLT1E LTR MaLR 0 593 1 777 209 0 19 chr11 41244647 41244805 -109538748 + FAM SINE Alu 9 163 -22 220 188 29 0 chr11 41244811 41244880 -109538673 + (TA)n Simple_repeat Simple_repeat 1 71 0 288 274 97 59 chr11 41245402 41245588 -109537965 + MIR SINE MIR 26 218 -44 332 360 25 50 chr11 41247666 41247905 -109535648 + MIR SINE MIR 14 246 -16 260 366 60 14 chr11 41247999 41248215 -109535338 - L3 LINE CR1 -271 1306 1081 260 252 0 19 chr11 41248503 41248606 -109534947 + L1MC4 LINE L1 6603 6703 -1339 244 107 54 0 chr11 41248561 41248617 -109534936 - L1MCa LINE L1 -4362 2064 2006 * 249 369 50 50 chr11 41248665 41248887 -109534666 - L3 LINE CR1 -752 825 604 1928 121 29 0 chr11 41248970 41249273 -109534280 - AluSx SINE Alu 0 313 3 242 351 149 5 chr11 41250138 41250326 -109533227 - MIR SINE MIR 0 262 48 3020 210 37 46 chr11 41250456 41251288 -109532265 - LTR1B LTR ERV1 -1 825 1 381 256 23 53 chr11 41251757 41251890 -109531663 - MLT1I LTR MaLR -6 403 275 416 231 8 43 chr11 41251959 41252076 -109531477 + MLT1I LTR MaLR 283 395 -14 232 313 89 18 chr11 41252136 41252248 -109531305 + MER5B DNA MER1_type 3 122 -56 307 335 180 27 chr11 41253499 41253872 -109529681 - L2 LINE L2 -67 3246 2817 * 458 331 97 32 chr11 41253843 41254121 -109529432 - L2 LINE L2 -1954 1360 1065 22 70 0 0 chr11 41254323 41254366 -109529187 + AT_rich Low_complexity Low_complexity 1 43 0 265 286 27 0 chr11 41254703 41254815 -109528738 + (TA)n Simple_repeat Simple_repeat 2 116 0 182 191 0 44 chr11 41254822 41254890 -109528663 + (CATATA)n Simple_repeat Simple_repeat 1 65 0 1815 187 12 52 chr11 41254937 41255269 -109528284 - MER31A LTR ERV1 -79 406 93 3408 147 7 89 chr11 41255269 41256022 -109527531 + LTR8 LTR ERV1 1 691 0 1815 187 12 52 chr11 41256022 41256112 -109527441 - MER31A LTR ERV1 -392 93 1 203 243 200 0 chr11 41256291 41256361 -109527192 + MIR SINE MIR 58 141 -121 313 229 26 20 chr11 41256772 41256925 -109526628 + CT-rich Low_complexity Low_complexity 3 156 0 205 182 0 0 chr11 41257114 41257158 -109526395 + T-rich Low_complexity Low_complexity 4 47 0 23 0 0 0 chr11 41257412 41257435 -109526118 + AT_rich Low_complexity Low_complexity 1 23 0 27 73 0 0 chr11 41257671 41257726 -109525827 + AT_rich Low_complexity Low_complexity 1 55 0 2306 116 50 14 chr11 41258336 41258698 -109524855 + THE1C LTR MaLR 1 375 0 1371 167 147 0 chr11 41259945 41260203 -109523350 + AluSx SINE Alu 3 298 -4 1013 212 121 54 chr11 41260229 41260601 -109522952 - MER39 LTR ERV1 0 707 311 271 242 71 20 chr11 41262441 41262540 -109521013 + MLT1I LTR MaLR 296 399 -10 336 275 126 30 chr11 41264334 41264501 -109519052 + MER5A DNA MER1_type 7 189 0 183 315 74 0 chr11 41264501 41264555 -109518998 - L2 LINE L2 -19 3294 3237 342 298 196 0 chr11 41265989 41266157 -109517396 + MIR SINE MIR 51 251 -11 2151 73 21 3 chr11 41266166 41266452 -109517101 + AluY SINE Alu 1 291 -20 21 0 0 0 chr11 41266454 41266475 -109517078 + AT_rich Low_complexity Low_complexity 1 21 0 232 279 37 88 chr11 41267007 41267143 -109516410 + MIR SINE MIR 78 206 -56 196 313 12 24 chr11 41267699 41267782 -109515771 + MIR SINE MIR 181 262 0 377 238 96 136 chr11 41268115 41268742 -109514811 - L1MC5 LINE L1 -241 7720 7119 33 25 0 0 chr11 41268815 41268855 -109514698 + AT_rich Low_complexity Low_complexity 1 40 0 293 336 9 9 chr11 41269799 41269906 -109513647 - MIR SINE MIR -103 159 53 21 0 0 0 chr11 41271232 41271253 -109512300 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr11 41271736 41271768 -109511785 + AT_rich Low_complexity Low_complexity 1 32 0 243 0 0 0 chr11 41272087 41272114 -109511439 + (CAAAAA)n Simple_repeat Simple_repeat 2 28 0 228 295 42 72 chr11 41272449 41272615 -109510938 - MIR SINE MIR -56 206 46 22 56 0 0 chr11 41272932 41272968 -109510585 + AT_rich Low_complexity Low_complexity 1 36 0 306 290 19 19 chr11 41272974 41273081 -109510472 + MIR SINE MIR 110 216 -46 231 36 0 0 chr11 41273223 41273251 -109510302 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 1988 177 30 39 chr11 41273356 41273909 -109509644 + MLT2A2 LTR ERVL 1 554 0 23 108 0 0 chr11 41274479 41274572 -109508981 + AT_rich Low_complexity Low_complexity 1 93 0 215 30 0 30 chr11 41274913 41274946 -109508607 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 26 30 0 0 chr11 41275268 41275301 -109508252 + AT_rich Low_complexity Low_complexity 1 33 0 2058 124 0 3 chr11 41275480 41275770 -109507783 + AluSx SINE Alu 1 289 -23 4754 218 74 3 chr11 41275822 41276803 -109506750 + L1PA13 LINE L1 1 1051 -5736 3278 132 26 0 chr11 41276812 41277350 -109506203 + L1PA13 LINE L1 5601 6152 -11 328 275 38 71 chr11 41277399 41277610 -109505943 - L2 LINE L2 0 3313 3110 436 324 80 51 chr11 41277679 41278052 -109505501 - L2 LINE L2 -769 2545 2162 2663 96 0 0 chr11 41278539 41278894 -109504659 - THE1A LTR MaLR 0 355 1 11151 97 5 20 chr11 41278894 41280000 -109503553 - THE1A-int LTR MaLR 0 1580 504 2024 107 13 41 chr11 41280000 41280317 -109503236 - AluSg SINE Alu 0 310 3 11151 97 5 20 chr11 41280317 41280814 -109502739 - THE1A-int LTR MaLR -1076 504 1 2483 119 6 0 chr11 41280814 41281167 -109502386 - THE1A LTR MaLR 0 355 1 306 180 0 0 chr11 41281303 41281364 -109502189 + (CA)n Simple_repeat Simple_repeat 2 62 0 244 313 137 8 chr11 41281622 41281753 -109501800 - L2 LINE L2 -4 3268 3121 22 80 0 0 chr11 41281847 41281897 -109501656 + AT_rich Low_complexity Low_complexity 1 50 0 275 146 18 0 chr11 41282597 41282652 -109500901 + CT-rich Low_complexity Low_complexity 4 59 0 432 37 0 0 chr11 41282696 41282750 -109500803 + (CA)n Simple_repeat Simple_repeat 2 55 0 453 234 0 28 chr11 41284546 41284653 -109498900 + MER5A DNA MER1_type 3 106 -83 221 247 176 35 chr11 41285330 41285415 -109498138 + L2 LINE L2 3141 3237 -76 186 306 65 16 chr11 41285498 41285560 -109497993 + MIR SINE MIR 82 146 -62 350 255 20 10 chr11 41285570 41285668 -109497885 + MER89 LTR ERV1 1 99 -460 1556 196 30 24 chr11 41285710 41285916 -109497637 + MER89 LTR ERV1 226 436 -123 1737 202 33 25 chr11 41285916 41286278 -109497275 + MLT1A1 LTR MaLR 1 365 0 1556 196 30 24 chr11 41286278 41286403 -109497150 + MER89 LTR ERV1 436 559 0 1224 291 17 10 chr11 41286734 41287139 -109496414 + MER97c DNA MER1_type? 250 657 -433 566 110 65 160 chr11 41287148 41287348 -109496205 - MER53 DNA DNA 0 189 9 240 172 52 0 chr11 41287360 41287418 -109496135 + MER97a DNA MER1_type? 662 722 -172 4681 209 67 13 chr11 41287633 41289067 -109494486 + L1MC1 LINE L1 4820 6333 0 22 0 0 0 chr11 41289592 41289614 -109493939 + AT_rich Low_complexity Low_complexity 1 22 0 295 331 98 12 chr11 41290383 41290546 -109493007 - MIR SINE MIR -34 228 52 1102 234 20 31 chr11 41290548 41290899 -109492654 - LTR37A LTR ERV1 -2 424 78 280 280 20 0 chr11 41292494 41292594 -109490959 - L1MEc LINE L1 -4753 1643 1542 748 131 46 15 chr11 41293045 41293175 -109490378 - MER61E LTR ERV1 0 569 436 430 151 209 0 chr11 41293207 41293293 -109490260 - LTR25 LTR ERV1 -275 519 416 354 129 157 0 chr11 41293521 41293591 -109489962 - MER61E LTR ERV1 -484 85 5 330 304 89 18 chr11 41293640 41293808 -109489745 - L1ME LINE L1 -330 5791 5612 331 305 84 25 chr11 41293875 41294078 -109489475 - L1ME LINE L1 -2320 5488 5274 36 40 0 0 chr11 41294174 41294224 -109489329 + AT_rich Low_complexity Low_complexity 1 50 0 29 78 0 0 chr11 41294629 41294693 -109488860 + AT_rich Low_complexity Low_complexity 1 64 0 916 109 7 14 chr11 41294952 41295099 -109488454 + L1PA8 LINE L1 6026 6171 -1 624 163 65 20 chr11 41295546 41295699 -109487854 + MER53 DNA DNA 4 163 -26 11191 101 5 4 chr11 41295805 41298236 -109485317 - L1PA8 LINE L1 0 6172 3735 21 0 0 0 chr11 41299413 41299434 -109484119 + AT_rich Low_complexity Low_complexity 1 21 0 634 259 59 38 chr11 41299462 41299701 -109483852 - L1ME3A LINE L1 0 6170 5927 1609 221 2 86 chr11 41299714 41300170 -109483383 - MER34 LTR ERV1 0 542 125 523 317 123 4 chr11 41300262 41300489 -109483064 - L1ME3A LINE L1 -406 5764 5511 352 307 83 31 chr11 41300519 41300717 -109482836 - MIR SINE MIR -18 244 39 291 292 28 56 chr11 41300809 41300953 -109482600 - MIR SINE MIR -24 238 99 435 276 43 0 chr11 41301004 41301120 -109482433 + L2 LINE L2 3193 3313 0 206 400 43 9 chr11 41301399 41301514 -109482039 - L2 LINE L2 0 3272 3154 213 300 56 0 chr11 41301516 41301606 -109481947 + MIR SINE MIR 97 191 -71 189 0 0 0 chr11 41301866 41301887 -109481666 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 848 291 112 21 chr11 41301964 41302349 -109481204 - MER57B LTR ERV1 -5 429 10 202 306 71 31 chr11 41302893 41302991 -109480562 - L2 LINE L2 0 3272 3171 180 77 0 0 chr11 41303441 41303467 -109480086 + (CTTG)n Simple_repeat Simple_repeat 2 27 0 39 95 0 0 chr11 41304928 41305044 -109478509 + AT_rich Low_complexity Low_complexity 1 116 0 663 209 0 31 chr11 41307663 41307792 -109475761 + FLAM_C SINE Alu 3 127 -16 506 299 125 20 chr11 41308053 41308501 -109475052 + L1M4 LINE L1 3798 4292 -1854 500 346 118 40 chr11 41308595 41309377 -109474176 + L1M4 LINE L1 4399 5241 -905 851 208 45 10 chr11 41309631 41309833 -109473720 - MLT1C LTR MaLR -2 465 257 29871 118 11 25 chr11 41310003 41316420 -109467133 - L1PA7 LINE L1 -66 6403 2 2102 171 3 3 chr11 41316474 41316836 -109466717 - THE1B LTR MaLR -2 362 1 9049 141 36 26 chr11 41316836 41318400 -109465153 - THE1C-int LTR MaLR 0 1580 1 2569 128 3 0 chr11 41318400 41318774 -109464779 - THE1C LTR MaLR 0 375 1 225 94 0 0 chr11 41318824 41318856 -109464697 + (A)n Simple_repeat Simple_repeat 1 32 0 1753 183 27 18 chr11 41319729 41320062 -109463491 - MER1B DNA MER1_type -1 336 1 826 209 45 25 chr11 41320475 41320676 -109462877 - MER3 DNA MER1_type -4 205 1 2096 106 7 0 chr11 41320997 41321290 -109462263 + AluSx SINE Alu 1 295 -17 491 185 7 74 chr11 41322593 41322728 -109460825 + MLT1E2 LTR MaLR 64 189 -437 3195 19 0 0 chr11 41322728 41323095 -109460458 + L1PA3 LINE L1 5644 6010 -145 12891 128 26 21 chr11 41323095 41324798 -109458755 - LOR1-int LTR ERV1 -3284 4836 3115 1829 169 6 28 chr11 41324798 41325117 -109458436 - AluJo SINE Alu 0 312 1 12891 128 26 21 chr11 41325117 41325647 -109457906 - LOR1-int LTR ERV1 -5005 3115 2590 2082 175 7 19 chr11 41325660 41326344 -109457209 - MER52A LTR ERV1 -374 1381 1 9522 143 21 23 chr11 41326344 41327983 -109455570 - LOR1a-int LTR ERV1 -6485 1635 1 2873 168 8 2 chr11 41327983 41328476 -109455077 - LOR1a LTR ERV1 0 497 2 22 35 0 0 chr11 41330317 41330346 -109453207 + AT_rich Low_complexity Low_complexity 1 29 0 53 69 0 0 chr11 41330562 41330664 -109452889 + AT_rich Low_complexity Low_complexity 1 102 0 194 299 93 10 chr11 41330947 41331044 -109452509 - L2 LINE L2 -1 3312 3208 8975 93 6 4 chr11 41331144 41332397 -109451156 - L1P LINE L1 -977 5169 3912 2570 14 0 0 chr11 41332397 41332693 -109450860 - L1PA2 LINE L1 0 6155 5860 8975 93 6 4 chr11 41332693 41332718 -109450835 - L1P LINE L1 -2234 3912 3889 8016 109 7 6 chr11 41332819 41334044 -109449509 - L1P LINE L1 -1445 4701 3475 274 229 0 0 chr11 41334044 41334105 -109449448 + MLT1E3 LTR MaLR 562 622 -2 691 289 47 8 chr11 41334149 41334384 -109449169 - MIR SINE MIR -5 257 14 220 207 11 35 chr11 41334775 41334862 -109448691 + T-rich Low_complexity Low_complexity 5 89 0 343 310 127 18 chr11 41335828 41336470 -109447083 + L1MEc LINE L1 830 1401 -4816 335 310 47 53 chr11 41336586 41336947 -109446606 + L1MEc LINE L1 1931 2289 -4107 345 47 0 0 chr11 41336948 41336991 -109446562 + (CA)n Simple_repeat Simple_repeat 1 43 0 868 208 72 65 chr11 41337286 41337579 -109445974 - MLT1D LTR MaLR 0 505 211 335 154 0 46 chr11 41339572 41339637 -109443916 + MER5B DNA MER1_type 9 70 -108 651 137 0 10 chr11 41340178 41340280 -109443273 - AluS SINE Alu -211 101 1 1905 150 12 18 chr11 41340285 41340624 -109442929 - L1MC1 LINE L1 0 6333 5997 3035 98 22 2 chr11 41341467 41341914 -109441639 + L1PA14 LINE L1 5706 6161 0 199 314 14 14 chr11 41342007 41342077 -109441476 + L2 LINE L2 3203 3272 0 416 331 77 17 chr11 41342124 41342411 -109441142 + L1ME4a LINE L1 5564 5867 -254 2080 122 0 3 chr11 41344104 41344398 -109439155 + AluSx SINE Alu 1 293 -19 1127 139 6 0 chr11 41345148 41345314 -109438239 - AluSx SINE Alu -25 287 121 955 138 0 0 chr11 41345929 41346059 -109437494 - AluSx SINE Alu -182 130 1 488 211 11 0 chr11 41346075 41346165 -109437388 - MLT1D LTR MaLR -414 91 1 393 227 167 51 chr11 41346192 41346408 -109437145 + L1MEc LINE L1 2716 2956 -3259 933 254 29 26 chr11 41346415 41346765 -109436788 - L1M4 LINE L1 -754 5392 5042 1509 170 64 36 chr11 41346780 41347036 -109436517 + MER44D DNA MER2_type 1 249 -2242 1953 156 19 26 chr11 41347036 41347414 -109436139 - THE1C LTR MaLR 0 375 1 1509 170 64 36 chr11 41347414 41347487 -109436066 + MER44D DNA MER2_type 249 609 0 1274 282 56 31 chr11 41347492 41348367 -109435186 - L1MDb LINE L1 -2140 4504 3608 668 285 64 31 chr11 41348400 41348789 -109434764 - L1MDb LINE L1 -3257 3387 2986 * 1001 273 104 52 chr11 41348786 41349857 -109433696 - L1MDb LINE L1 -3973 2671 1441 25 65 0 0 chr11 41349912 41349958 -109433595 + AT_rich Low_complexity Low_complexity 1 46 0 310 336 43 43 chr11 41349965 41350176 -109433377 - L1MDb LINE L1 -5421 1226 1016 344 40 20 0 chr11 41350580 41350630 -109432923 + (TG)n Simple_repeat Simple_repeat 2 52 0 310 301 16 47 chr11 41350681 41350874 -109432679 - L1MDb LINE L1 -6318 326 140 2990 156 6 6 chr11 41350923 41351418 -109432135 - LOR1a LTR ERV1 -2 495 1 675 81 0 0 chr11 41351420 41351507 -109432046 - LOR1a-int LTR ERV1 -3 8117 8031 * 20208 127 35 18 chr11 41351498 41354391 -109429162 - LOR1a-int LTR ERV1 -2048 6072 3109 1847 169 6 28 chr11 41354391 41354710 -109428843 - AluJo SINE Alu 0 312 1 20208 127 35 18 chr11 41354710 41355240 -109428313 - LOR1a-int LTR ERV1 -5011 3109 2590 2118 175 7 19 chr11 41355253 41355937 -109427616 - MER52A LTR ERV1 -374 1381 1 9479 143 21 23 chr11 41355937 41357576 -109425977 - LOR1a-int LTR ERV1 -6485 1635 1 2889 168 8 2 chr11 41357576 41358069 -109425484 - LOR1a LTR ERV1 0 497 2 22 35 0 0 chr11 41359910 41359939 -109423614 + AT_rich Low_complexity Low_complexity 1 29 0 53 69 0 0 chr11 41360155 41360257 -109423296 + AT_rich Low_complexity Low_complexity 1 102 0 190 299 93 10 chr11 41360540 41360637 -109422916 - L2 LINE L2 -1 3312 3208 9660 88 6 3 chr11 41360737 41361990 -109421563 - L1P LINE L1 -977 5169 3910 2583 14 0 0 chr11 41361990 41362286 -109421267 - L1PA2 LINE L1 0 6155 5860 9660 88 6 3 chr11 41362286 41362388 -109421165 - L1P LINE L1 -2236 3910 3810 229 171 0 0 chr11 41362716 41362757 -109420796 + 5S rRNA rRNA 2 42 -79 25 65 0 0 chr11 41362887 41362933 -109420620 + AT_rich Low_complexity Low_complexity 1 46 0 1938 146 27 3 chr11 41363160 41363455 -109420098 + AluSx SINE Alu 1 302 -10 336 256 44 11 chr11 41365207 41365297 -109418256 + MER5C DNA MER1_type 2 94 -230 426 203 40 0 chr11 41365475 41365623 -109417930 + GA-rich Low_complexity Low_complexity 1 154 0 218 341 32 8 chr11 41366096 41366219 -109417334 + L2 LINE L2 2453 2578 -736 13583 202 21 60 chr11 41367148 41370055 -109413498 + L1PA13 LINE L1 1 3019 -3795 1753 179 13 32 chr11 41370055 41370430 -109413123 - L1MB8 LINE L1 0 6178 5811 3102 63 2 0 chr11 41370430 41370816 -109412737 - L1PA7 LINE L1 -1 6153 5758 13583 202 21 60 chr11 41370816 41373075 -109410478 + L1PA13 LINE L1 3018 5363 -1451 2036 127 75 26 chr11 41373075 41373422 -109410131 - THE1B LTR MaLR 0 364 1 11333 105 2 0 chr11 41373422 41374999 -109408554 - THE1B-int LTR MaLR 0 1580 1 1884 156 79 15 chr11 41375001 41375341 -109408212 - THE1B LTR MaLR -2 362 1 13583 202 21 60 chr11 41375341 41377291 -109406262 + L1PA13 LINE L1 5363 6796 -18 1309 175 77 153 chr11 41377716 41378265 -109405288 + MER67D LTR ERV1 3 509 -5 1632 213 40 60 chr11 41379261 41379327 -109404226 - L1MB8 LINE L1 -869 5277 5211 459 0 0 0 chr11 41379327 41379378 -109404175 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 2110 108 4 0 chr11 41379380 41379657 -109403896 - AluSc SINE Alu -29 280 3 1632 213 40 60 chr11 41379657 41379882 -109403671 - L1MB8 LINE L1 -936 5210 4996 1975 125 0 0 chr11 41379882 41380162 -109403391 - AluSg SINE Alu -30 280 1 1632 213 40 60 chr11 41380162 41380396 -109403157 - L1MB8 LINE L1 -1150 4996 4759 1363 188 6 72 chr11 41380412 41380757 -109402796 + L1MA10 LINE L1 6008 6329 -5 238 299 50 75 chr11 41380922 41380976 -109402577 + L1MC/D LINE L1 5533 5587 -2221 2459 53 7 3 chr11 41380976 41381276 -109402277 - AluY SINE Alu -10 301 1 238 299 50 75 chr11 41381276 41381462 -109402091 + L1MC/D LINE L1 5587 5767 -2041 487 351 120 20 chr11 41381748 41382297 -109401256 + L1M4 LINE L1 3352 3955 -2191 649 229 103 105 chr11 41382359 41382817 -109400736 - LTR37B LTR ERV1 -5 463 7 202 404 18 0 chr11 41383070 41383184 -109400369 + L2 LINE L2 3193 3308 -5 3296 130 12 17 chr11 41383831 41384053 -109399500 - L1M1 LINE L1 -507 5798 5576 7288 43 16 1 chr11 41384053 41384935 -109398618 + MER11D LTR ERVK 3 897 0 3296 130 12 17 chr11 41384935 41385461 -109398092 - L1M1 LINE L1 -729 5576 5054 1989 188 36 21 chr11 41385494 41385968 -109397585 + L1MA3 LINE L1 5824 6304 -1 523 80 0 0 chr11 41386117 41386192 -109397361 - Alu SINE Alu -1 311 237 426 182 27 9 chr11 41386367 41386477 -109397076 + CT-rich Low_complexity Low_complexity 4 115 0 1838 113 28 60 chr11 41386490 41386808 -109396745 - AluSq SINE Alu 0 313 6 763 250 52 24 chr11 41387232 41387444 -109396109 - MER20 DNA MER1_type -1 218 1 245 185 0 0 chr11 41388162 41388216 -109395337 + (TA)n Simple_repeat Simple_repeat 2 55 0 261 224 47 12 chr11 41388578 41388663 -109394890 - LTR37A LTR ERV1 -12 414 327 802 181 78 12 chr11 41388664 41388830 -109394723 + AluJb SINE Alu 136 312 0 245 262 139 32 chr11 41388878 41388936 -109394617 - LTR37A LTR ERV1 -114 312 262 3193 36 8 3 chr11 41388936 41389327 -109394226 + L1PA4 LINE L1 5763 6155 0 245 262 139 32 chr11 41389327 41389520 -109394033 - LTR37A LTR ERV1 -164 262 34 1618 86 14 9 chr11 41389665 41389885 -109393668 + AluSq SINE Alu 1 221 -92 209 139 23 0 chr11 41389885 41389928 -109393625 + A-rich Low_complexity Low_complexity 3 46 0 24 53 0 0 chr11 41390206 41390244 -109393309 + AT_rich Low_complexity Low_complexity 1 38 0 218 119 0 24 chr11 41390871 41390913 -109392640 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 570 247 73 17 chr11 41391872 41392050 -109391503 - MER69 DNA AcHobo -2302 224 37 21 0 0 0 chr11 41392238 41392259 -109391294 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr11 41393077 41393098 -109390455 + AT_rich Low_complexity Low_complexity 1 21 0 1095 121 81 0 chr11 41393532 41393705 -109389848 - AluSp SINE Alu -7 306 120 25 0 0 0 chr11 41393873 41393898 -109389655 + AT_rich Low_complexity Low_complexity 1 25 0 913 86 0 0 chr11 41393969 41394086 -109389467 - AluSp SINE Alu -196 117 1 2273 137 31 14 chr11 41395780 41396137 -109387416 + THE1B LTR MaLR 2 364 0 1361 220 3 25 chr11 41397931 41398217 -109385336 + AluJb SINE Alu 1 280 -32 197 306 27 63 chr11 41398741 41398852 -109384701 + MIR SINE MIR 74 180 -82 335 247 29 29 chr11 41399815 41399989 -109383564 + (TA)n Simple_repeat Simple_repeat 2 175 0 24 32 0 0 chr11 41400059 41400090 -109383463 + AT_rich Low_complexity Low_complexity 1 31 0 206 245 0 0 chr11 41400249 41400298 -109383255 + (TATATG)n Simple_repeat Simple_repeat 2 50 0 262 214 153 20 chr11 41400777 41400875 -109382678 - L1ME4a LINE L1 -32 6089 5979 243 0 0 0 chr11 41401937 41401964 -109381589 + (CA)n Simple_repeat Simple_repeat 2 28 0 244 325 160 19 chr11 41402729 41402941 -109380612 - MLT1J LTR MaLR -44 467 226 180 111 0 0 chr11 41403074 41403101 -109380452 + (TGG)n Simple_repeat Simple_repeat 3 29 0 2275 95 3 29 chr11 41403128 41403443 -109380110 + AluSg SINE Alu 1 307 -3 274 271 34 25 chr11 41404193 41404311 -109379242 - MER103 DNA DNA -43 123 5 9481 158 24 39 chr11 41405939 41407782 -109375771 + Tigger1 DNA MER2_type 603 2418 0 2174 107 0 0 chr11 41408026 41408307 -109375246 - AluSq SINE Alu -32 281 1 215 59 0 29 chr11 41408359 41408393 -109375160 + (TATG)n Simple_repeat Simple_repeat 4 36 0 752 194 29 17 chr11 41408654 41408829 -109374724 + MER58A DNA MER1_type 42 218 -6 1145 314 63 57 chr11 41409072 41409703 -109373850 - MER115 DNA AcHobo -7 686 52 566 310 11 11 chr11 41409752 41409936 -109373617 + MER20 DNA MER1_type 32 215 -4 290 278 270 0 chr11 41409938 41410053 -109373500 + MER5A DNA MER1_type 44 189 0 18154 61 0 7 chr11 41410272 41412578 -109370975 + L1P LINE L1 2 2290 -3856 7420 33 2 0 chr11 41412579 41413764 -109369789 + L1PA3 LINE L1 4969 6162 0 25 0 0 0 chr11 41414662 41414687 -109368866 + AT_rich Low_complexity Low_complexity 1 25 0 732 181 14 0 chr11 41415528 41415666 -109367887 + FRAM SINE Alu 36 175 -1 22 56 0 0 chr11 41415858 41415894 -109367659 + AT_rich Low_complexity Low_complexity 1 36 0 207 0 0 0 chr11 41416305 41416328 -109367225 + (CAA)n Simple_repeat Simple_repeat 2 24 0 403 215 19 19 chr11 41416759 41416866 -109366687 + FLAM_A SINE Alu 22 128 -5 23 0 0 0 chr11 41417203 41417226 -109366327 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr11 41417241 41417270 -109366283 + AT_rich Low_complexity Low_complexity 1 29 0 1830 342 99 17 chr11 41417744 41418959 -109364594 + L2 LINE L2 1781 3120 -193 3008 208 22 27 chr11 41418959 41419672 -109363881 - MER67C LTR ERV1 0 710 1 1830 342 99 17 chr11 41419672 41419878 -109363675 + L2 LINE L2 3120 3308 -5 35 41 0 0 chr11 41419878 41419927 -109363626 + AT_rich Low_complexity Low_complexity 1 49 0 757 285 0 0 chr11 41420013 41420185 -109363368 - FRAM SINE Alu -4 172 1 10011 75 13 1 chr11 41420196 41421505 -109362048 - L1P LINE L1 -4820 1326 2 2918 162 71 58 chr11 41421513 41421801 -109361752 - L1MC1 LINE L1 -66 6267 5984 1741 145 68 41 chr11 41421801 41422166 -109361387 - THE1C LTR MaLR 0 375 1 2918 162 71 58 chr11 41422166 41422585 -109360968 - L1MC1 LINE L1 -349 5984 5551 11316 229 38 23 chr11 41423914 41429158 -109354395 + L1PA16 LINE L1 783 6205 -18 690 242 1 7 chr11 41429163 41429327 -109354226 - L1MC/D LINE L1 -763 5570 5404 2356 101 3 0 chr11 41429412 41429718 -109353835 + AluSc SINE Alu 3 309 0 1580 234 8 66 chr11 41430894 41431382 -109352171 + MLT1C LTR MaLR 6 465 -2 304 306 127 19 chr11 41432333 41432490 -109351063 - MIR SINE MIR -68 194 21 40 21 0 0 chr11 41432509 41432556 -109350997 + AT_rich Low_complexity Low_complexity 1 47 0 1389 91 15 0 chr11 41434638 41434835 -109348718 + L1PA12 LINE L1 5969 6168 0 180 300 135 47 chr11 41434871 41435041 -109348512 - L2 LINE L2 -410 2904 2720 25 31 0 0 chr11 41436726 41436758 -109346795 + AT_rich Low_complexity Low_complexity 1 32 0 303 378 43 10 chr11 41437808 41438017 -109345536 + MIR SINE MIR 41 256 -6 270 299 0 0 chr11 41438248 41438325 -109345228 + MLT1J1 LTR MaLR 1 77 -369 284 265 66 53 chr11 41438350 41438501 -109345052 + MLT1J2 LTR MaLR 137 289 -161 1599 239 41 66 chr11 41438533 41439064 -109344489 + MLT1F LTR MaLR 25 542 0 1007 222 13 44 chr11 41439214 41439439 -109344114 - MER20 DNA MER1_type -1 218 1 221 221 163 35 chr11 41439469 41439555 -109343998 + MIR3 SINE MIR 73 169 -39 392 311 98 0 chr11 41440178 41440310 -109343243 + MIR SINE MIR 2 146 -116 264 250 50 0 chr11 41441055 41441135 -109342418 + LTR16A1 LTR ERVL 372 455 -2 414 70 0 0 chr11 41441384 41441441 -109342112 - L1PA8 LINE L1 -5 6167 6111 180 0 0 0 chr11 41441593 41441613 -109341940 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 4451 195 75 29 chr11 41443602 41443967 -109339586 + L1MC3 LINE L1 6626 6973 -812 1830 138 67 28 chr11 41443967 41444328 -109339225 - THE1C LTR MaLR 0 375 1 4451 195 75 29 chr11 41444328 41445057 -109338496 + L1MC3 LINE L1 6973 7770 -15 22 35 0 0 chr11 41445062 41445091 -109338462 + AT_rich Low_complexity Low_complexity 1 29 0 2003 92 0 7 chr11 41445712 41445995 -109337558 + AluY SINE Alu 21 301 -10 1918 101 11 31 chr11 41446141 41446428 -109337125 + AluSq SINE Alu 1 281 -32 270 136 0 0 chr11 41446432 41446476 -109337077 + (TA)n Simple_repeat Simple_repeat 2 45 0 23 33 0 0 chr11 41446604 41446634 -109336919 + AT_rich Low_complexity Low_complexity 1 30 0 1090 188 0 0 chr11 41446648 41446834 -109336719 - L1PA16 LINE L1 -73 6093 5908 8259 203 31 45 chr11 41446837 41447944 -109335609 - L1PA16 LINE L1 -638 5528 4408 297 0 0 0 chr11 41447944 41447977 -109335576 + (TG)n Simple_repeat Simple_repeat 1 33 0 8259 203 31 45 chr11 41447977 41448177 -109335376 - L1PA16 LINE L1 -1758 4408 4207 2219 94 0 7 chr11 41448177 41448464 -109335089 - AluSg1 SINE Alu -24 285 1 8259 203 31 45 chr11 41448464 41449656 -109333897 - L1PA16 LINE L1 -1959 4207 3073 21 0 0 0 chr11 41450330 41450351 -109333202 + AT_rich Low_complexity Low_complexity 1 21 0 2240 98 0 0 chr11 41451035 41451330 -109332223 + AluSx SINE Alu 1 295 -17 353 257 28 9 chr11 41452076 41452185 -109331368 + MIR SINE MIR 106 216 -46 21 0 0 0 chr11 41452412 41452433 -109331120 + AT_rich Low_complexity Low_complexity 1 21 0 2057 151 119 8 chr11 41452675 41453060 -109330493 + MSTA LTR MaLR 1 428 0 21 36 0 0 chr11 41453676 41453704 -109329849 + AT_rich Low_complexity Low_complexity 1 28 0 260 306 117 17 chr11 41453812 41453992 -109329561 + MIR SINE MIR 6 203 -59 186 328 33 0 chr11 41455148 41455209 -109328344 + L2 LINE L2 2866 2928 -344 1991 121 14 0 chr11 41455730 41456019 -109327534 - AluSx SINE Alu -19 293 1 185 393 22 0 chr11 41456458 41456547 -109327006 + L2 LINE L2 2278 2368 -946 26 0 0 0 chr11 41457012 41457038 -109326515 + AT_rich Low_complexity Low_complexity 1 26 0 23 54 0 0 chr11 41457083 41457120 -109326433 + AT_rich Low_complexity Low_complexity 1 37 0 30 27 0 0 chr11 41457323 41457360 -109326193 + AT_rich Low_complexity Low_complexity 1 37 0 4405 229 64 36 chr11 41457395 41459260 -109324293 - L1 LINE L1 -2776 4789 2977 522 0 0 0 chr11 41459260 41459318 -109324235 + (TG)n Simple_repeat Simple_repeat 2 59 0 4405 229 64 36 chr11 41459318 41459397 -109324156 - L1 LINE L1 -4588 2977 2902 2247 71 3 3 chr11 41459397 41459724 -109323829 - AluY SINE Alu 0 327 1 4405 229 64 36 chr11 41459724 41460458 -109323095 - L1 LINE L1 -4663 2902 2028 13953 186 57 21 chr11 41460479 41465193 -109318360 - L1PB1 LINE L1 -1 6866 2325 216 0 0 0 chr11 41465193 41465217 -109318336 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 13953 186 57 21 chr11 41465217 41465335 -109318218 - L1PB1 LINE L1 -4542 2325 2213 2075 86 65 0 chr11 41465335 41465613 -109317940 - AluSq SINE Alu -17 296 1 13953 186 57 21 chr11 41465613 41466790 -109316763 - L1PB1 LINE L1 -4654 2213 634 941 195 26 0 chr11 41466791 41466981 -109316572 - L1PB1 LINE L1 -6666 197 3 322 310 32 58 chr11 41466993 41467148 -109316405 - L1 LINE L1 -5541 2024 1874 25 0 0 0 chr11 41467407 41467432 -109316121 + AT_rich Low_complexity Low_complexity 1 25 0 1067 207 29 58 chr11 41467872 41468147 -109315406 - AluJo SINE Alu -24 288 22 354 291 152 7 chr11 41468303 41468454 -109315099 + MIR SINE MIR 88 260 -2 217 241 93 0 chr11 41468505 41468559 -109314994 + L2 LINE L2 3214 3272 0 29 28 0 0 chr11 41469482 41469518 -109314035 + AT_rich Low_complexity Low_complexity 1 36 0 253 372 90 6 chr11 41469827 41469983 -109313570 - MIR SINE MIR -91 171 3 230 341 12 0 chr11 41470006 41470091 -109313462 + GA-rich Low_complexity Low_complexity 2 87 0 30 0 0 0 chr11 41470612 41470642 -109312911 + AT_rich Low_complexity Low_complexity 1 30 0 1000 212 156 23 chr11 41470695 41470997 -109312556 - MER7A DNA MER2_type -6 340 1 309 279 136 7 chr11 41471007 41471147 -109312406 + L1ME4a LINE L1 5799 5956 -165 1690 180 35 12 chr11 41471705 41472044 -109311509 - L1PB4 LINE L1 -12 6144 5798 231 138 31 15 chr11 41472062 41472127 -109311426 + (TA)n Simple_repeat Simple_repeat 1 66 0 225 148 19 19 chr11 41472202 41472256 -109311297 + LTR66 LTR ERVL 386 439 -171 206 194 15 0 chr11 41472365 41472432 -109311121 + (TA)n Simple_repeat Simple_repeat 1 68 0 307 326 0 0 chr11 41472472 41472561 -109310992 - L1MC4 LINE L1 -1340 6702 6614 225 297 0 11 chr11 41472577 41472668 -109310885 + L1MC4 LINE L1 6614 6703 -1339 268 265 8 8 chr11 41472673 41472805 -109310748 + (TA)n Simple_repeat Simple_repeat 1 132 0 850 161 70 1 chr11 41473165 41473379 -109310174 - L1M2 LINE L1 -367 5789 5318 282 298 11 0 chr11 41473489 41473583 -109309970 + (TA)n Simple_repeat Simple_repeat 2 96 0 1720 211 18 0 chr11 41474089 41474430 -109309123 + MER7A DNA MER2_type 2 346 0 32 0 0 0 chr11 41474869 41474901 -109308652 + AT_rich Low_complexity Low_complexity 1 32 0 288 289 74 16 chr11 41475815 41475936 -109307617 + MIR SINE MIR 64 191 -71 288 230 106 6 chr11 41475982 41476112 -109307441 + MIR SINE MIR 104 248 -14 231 362 78 0 chr11 41476662 41476778 -109306775 - MIR3 SINE MIR -6 202 78 198 0 0 0 chr11 41477088 41477110 -109306443 + (CA)n Simple_repeat Simple_repeat 1 22 0 1614 116 22 25 chr11 41477314 41477591 -109305962 + HSMAR2 DNA Mariner 3 278 -1024 267 79 0 0 chr11 41477596 41477634 -109305919 + L1MA3 LINE L1 6166 6203 -102 232 132 0 0 chr11 41477601 41477639 -109305914 + L1MA4A LINE L1 6170 6207 -96 * 326 71 12 224 chr11 41477695 41477780 -109305773 + HSMAR2 DNA Mariner 271 337 -965 * 2380 149 7 12 chr11 41477776 41478184 -109305369 + HSMAR2 DNA Mariner 896 1301 -1 26 0 0 0 chr11 41478929 41478955 -109304598 + AT_rich Low_complexity Low_complexity 1 26 0 540 292 73 18 chr11 41479645 41479864 -109303689 + MIR SINE MIR 2 232 -30 330 269 70 39 chr11 41479871 41480128 -109303425 - L1ME LINE L1 -630 5532 5268 242 169 12 36 chr11 41480330 41480413 -109303140 + (TA)n Simple_repeat Simple_repeat 2 82 0 480 275 104 42 chr11 41480501 41480905 -109302648 - L1ME LINE L1 -1303 4843 4415 27 49 0 0 chr11 41481047 41481088 -109302465 + AT_rich Low_complexity Low_complexity 1 41 0 200 152 43 0 chr11 41481631 41481677 -109301876 + (TCTA)n Simple_repeat Simple_repeat 1 48 0 1404 158 32 7 chr11 41481949 41482228 -109301325 + L1MA7 LINE L1 6000 6285 -6 430 273 10 83 chr11 41482618 41482657 -109300896 - HAL1 LINE L1 -193 2314 2274 1529 191 112 16 chr11 41482657 41483033 -109300520 + MLT2D LTR ERVL 3 414 0 430 273 10 83 chr11 41483033 41483093 -109300460 - HAL1 LINE L1 -233 2274 2211 1979 95 8 0 chr11 41483093 41483357 -109300196 - AluSp SINE Alu -47 266 1 430 273 10 83 chr11 41483357 41483556 -109299997 - HAL1 LINE L1 -296 2211 2037 318 359 28 56 chr11 41483641 41483928 -109299625 - LTR67 LTR ERVL -272 285 7 21 36 0 0 chr11 41484742 41484770 -109298783 + AT_rich Low_complexity Low_complexity 1 28 0 238 286 0 0 chr11 41485733 41485803 -109297750 + (TAA)n Simple_repeat Simple_repeat 1 70 0 1329 231 0 26 chr11 41486193 41486355 -109297198 - AluJo SINE Alu -17 295 143 2209 86 13 7 chr11 41486355 41486657 -109296896 - AluSq SINE Alu -9 304 1 1329 231 0 26 chr11 41486657 41486797 -109296756 - AluJo SINE Alu -169 143 1 23 0 0 0 chr11 41487145 41487168 -109296385 + AT_rich Low_complexity Low_complexity 1 23 0 641 342 136 10 chr11 41487990 41488559 -109294994 + L2 LINE L2 2662 3307 -6 1591 233 101 58 chr11 41489083 41489787 -109293766 + MER50 LTR ERV1 1 734 0 614 274 162 5 chr11 41489907 41490111 -109293442 - MIR SINE MIR -21 241 6 715 78 17 0 chr11 41490848 41490964 -109292589 + (TC)n Simple_repeat Simple_repeat 1 118 0 2275 144 23 0 chr11 41491205 41491559 -109291994 + THE1B LTR MaLR 3 364 0 207 306 83 0 chr11 41492174 41492246 -109291307 + L2 LINE L2 3173 3250 -22 221 363 59 10 chr11 41492567 41492669 -109290884 - L3b LINE CR1 -5 1578 1472 316 283 67 33 chr11 41492965 41493085 -109290468 - MLT1G1 LTR MaLR -44 551 428 2005 128 7 0 chr11 41493195 41493515 -109290038 - AluSx SINE Alu 0 322 1 247 268 24 12 chr11 41494930 41495012 -109288541 - MLT1H-int LTR MaLR -1284 87 5 411 291 84 103 chr11 41495016 41495491 -109288062 - MLT1H LTR MaLR 0 549 84 26 50 0 0 chr11 41495658 41495698 -109287855 + AT_rich Low_complexity Low_complexity 1 40 0 3056 101 12 2 chr11 41497015 41497439 -109286114 + MSTA LTR MaLR 1 428 0 293 353 45 0 chr11 41498241 41498374 -109285179 - MIR SINE MIR -56 206 68 439 222 7 111 chr11 41498786 41498930 -109284623 + L1MDa LINE L1 17 145 -6395 189 147 0 0 chr11 41498930 41498964 -109284589 + (GGA)n Simple_repeat Simple_repeat 3 36 0 366 271 14 32 chr11 41499024 41499252 -109284301 + CT-rich Low_complexity Low_complexity 1 224 0 243 0 0 0 chr11 41499736 41499763 -109283790 + (A)n Simple_repeat Simple_repeat 1 27 0 1962 129 3 32 chr11 41499775 41500085 -109283468 + AluSq SINE Alu 1 301 -12 263 227 45 0 chr11 41500086 41500174 -109283379 - L1MC4 LINE L1 -1339 6703 6612 453 94 35 0 chr11 41500174 41500259 -109283294 + (TA)n Simple_repeat Simple_repeat 1 88 0 21 36 0 0 chr11 41500360 41500388 -109283165 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr11 41500410 41500435 -109283118 + AT_rich Low_complexity Low_complexity 1 25 0 25 0 0 0 chr11 41500788 41500813 -109282740 + AT_rich Low_complexity Low_complexity 1 25 0 22 35 0 0 chr11 41500905 41500934 -109282619 + AT_rich Low_complexity Low_complexity 1 29 0 1552 0 0 0 chr11 41501073 41501240 -109282313 + AluYa5 SINE Alu 144 310 -1 1678 163 38 0 chr11 41501277 41501565 -109281988 - AluSx SINE Alu -13 299 1 247 200 20 0 chr11 41501575 41501625 -109281928 - L1MC/D LINE L1 -753 5591 5541 33 0 0 0 chr11 41501835 41501868 -109281685 + AT_rich Low_complexity Low_complexity 1 33 0 38 68 0 0 chr11 41502167 41502240 -109281313 + AT_rich Low_complexity Low_complexity 1 73 0 1804 157 7 0 chr11 41502476 41502756 -109280797 - AluJb SINE Alu -30 282 1 2082 92 3 11 chr11 41503493 41503777 -109279776 + AluSx SINE Alu 1 282 -30 1463 54 8 46 chr11 41504074 41504315 -109279238 + HERVK9 LTR ERVK 2555 2786 -3130 7226 73 8 11 chr11 41504315 41505267 -109278286 + HERVK9 LTR ERVK 3711 4660 -1256 507 164 53 26 chr11 41505297 41505449 -109278104 - L1PA5 LINE L1 -18 6136 5981 709 200 27 26 chr11 41505554 41505737 -109277816 - L1PB4 LINE L1 -190 5966 5783 228 131 33 16 chr11 41505740 41505801 -109277752 + (TA)n Simple_repeat Simple_repeat 1 62 0 294 164 0 0 chr11 41505885 41505940 -109277613 + (TA)n Simple_repeat Simple_repeat 1 55 0 182 179 18 0 chr11 41506039 41506095 -109277458 + (TA)n Simple_repeat Simple_repeat 2 58 0 315 287 37 0 chr11 41506118 41506226 -109277327 + (TATATG)n Simple_repeat Simple_repeat 1 112 0 261 341 96 7 chr11 41506873 41507008 -109276545 + L2 LINE L2 2058 2204 -1110 2092 137 3 0 chr11 41507008 41507307 -109276246 - AluSx SINE Alu -12 300 1 1603 164 19 61 chr11 41507321 41507499 -109276054 - AluJb SINE Alu -14 298 137 2220 104 3 0 chr11 41507499 41507797 -109275756 - AluSp SINE Alu -12 301 3 1603 164 19 61 chr11 41507797 41507929 -109275624 - AluJb SINE Alu -175 137 1 474 170 22 74 chr11 41508224 41508359 -109275194 + AluSp SINE Alu 1 128 -185 312 278 17 39 chr11 41509137 41509317 -109274236 + GA-rich Low_complexity Low_complexity 3 178 0 456 139 0 30 chr11 41509525 41509626 -109273927 + (GGA)n Simple_repeat Simple_repeat 1 98 0 1322 232 34 22 chr11 41509626 41509949 -109273604 + L1MDa LINE L1 116 442 -6098 776 234 33 120 chr11 41509949 41510458 -109273095 + MER4C LTR ERV1 1 465 0 974 293 173 49 chr11 41510463 41510694 -109272859 + L1MDa LINE L1 444 645 -5895 1976 127 0 35 chr11 41510694 41511010 -109272543 + AluSx SINE Alu 1 305 -7 974 293 173 49 chr11 41511010 41511269 -109272284 + L1MDa LINE L1 645 995 -5545 1116 208 56 28 chr11 41511324 41511608 -109271945 + MER67C LTR ERV1 108 399 -311 952 211 30 42 chr11 41511790 41511911 -109271642 + L1MDa LINE L1 1056 1177 -5363 3582 134 4 2 chr11 41511911 41512464 -109271089 - MER41A LTR ERV1 0 554 1 952 211 30 42 chr11 41512464 41512673 -109270880 + L1MDa LINE L1 1177 1382 -5158 991 227 78 13 chr11 41513087 41513474 -109270079 - MER113 DNA MER1_type? -75 446 35 1554 171 7 4 chr11 41514634 41514915 -109268638 + L1PA16 LINE L1 5885 6166 0 15398 100 8 0 chr11 41516438 41519470 -109264083 + L1PA7 LINE L1 3086 6147 -7 21 57 0 0 chr11 41519471 41519506 -109264047 + AT_rich Low_complexity Low_complexity 1 35 0 1122 199 74 12 chr11 41519934 41520190 -109263363 - MLT1A1 LTR MaLR 0 365 94 9266 161 18 11 chr11 41520191 41521797 -109261756 + Tigger1 DNA MER2_type 2 1619 -799 2155 180 19 15 chr11 41521797 41522208 -109261345 + Tigger1 DNA MER2_type 2006 2418 0 454 200 11 11 chr11 41522214 41522304 -109261249 - MLT1A1 LTR MaLR -284 90 1 33 43 0 0 chr11 41522707 41522754 -109260799 + AT_rich Low_complexity Low_complexity 1 47 0 458 143 0 0 chr11 41522811 41522902 -109260651 - L1MA4A LINE L1 -7 6296 6206 298 295 69 45 chr11 41523683 41524219 -109259334 - L1M4 LINE L1 -777 5369 4821 517 314 75 34 chr11 41524419 41524833 -109258720 - L1ME3A LINE L1 -75 6095 5665 24 67 0 0 chr11 41524951 41524996 -109258557 + AT_rich Low_complexity Low_complexity 1 45 0 28 95 0 0 chr11 41525081 41525165 -109258388 + AT_rich Low_complexity Low_complexity 1 84 0 8209 100 8 4 chr11 41525165 41525826 -109257727 - L1PA7 LINE L1 -13 6141 5484 2141 128 0 3 chr11 41525826 41526132 -109257421 - AluY SINE Alu -6 305 1 8209 100 8 4 chr11 41526132 41527459 -109256094 - L1PA7 LINE L1 -670 5484 4161 19006 136 18 88 chr11 41527460 41531471 -109252082 - L1PA7 LINE L1 -2409 3737 9 285 306 135 11 chr11 41531480 41531827 -109251726 - L1ME LINE L1 -4759 1502 1113 1326 231 24 10 chr11 41531898 41532196 -109251357 - AluJo SINE Alu 0 302 1 24 0 0 0 chr11 41532472 41532496 -109251057 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr11 41532706 41532730 -109250823 + AT_rich Low_complexity Low_complexity 1 24 0 30 59 0 0 chr11 41532769 41532820 -109250733 + AT_rich Low_complexity Low_complexity 1 51 0 1950 142 57 132 chr11 41532864 41533453 -109250100 - MLT2A2 LTR ERVL 0 554 1 769 245 31 43 chr11 41534115 41534566 -109248987 - L1ME LINE L1 -5034 1049 718 501 174 0 0 chr11 41534599 41534697 -109248856 + CT-rich Low_complexity Low_complexity 2 99 0 1565 165 140 13 chr11 41534762 41535155 -109248398 - L1MB8 LINE L1 -2 6176 5734 1944 73 0 25 chr11 41535650 41535924 -109247629 + AluY SINE Alu 35 301 -10 215 140 20 0 chr11 41535924 41535974 -109247579 + (TA)n Simple_repeat Simple_repeat 2 52 0 2094 100 48 0 chr11 41537294 41537583 -109245970 - AluSx SINE Alu -9 303 1 23 33 0 0 chr11 41537977 41538007 -109245546 + AT_rich Low_complexity Low_complexity 1 30 0 222 118 0 0 chr11 41538624 41538658 -109244895 + (A)n Simple_repeat Simple_repeat 1 34 0 22 35 0 0 chr11 41539599 41539628 -109243925 + AT_rich Low_complexity Low_complexity 1 29 0 2289 108 0 6 chr11 41539812 41540126 -109243427 + AluSx SINE Alu 1 312 0 7911 213 26 8 chr11 41540438 41543613 -109239940 - L1PA16 LINE L1 0 6166 2936 1957 118 0 65 chr11 41544376 41544698 -109238855 + AluSx SINE Alu 1 301 -11 38 39 0 0 chr11 41544775 41544827 -109238726 + AT_rich Low_complexity Low_complexity 1 52 0 1036 62 0 8 chr11 41545712 41545841 -109237712 - AluSq/x SINE Alu -184 128 1 21 0 0 0 chr11 41546114 41546135 -109237418 + AT_rich Low_complexity Low_complexity 1 21 0 1691 176 3 10 chr11 41547093 41547383 -109236170 - AluJb SINE Alu -24 288 1 22 0 0 0 chr11 41548554 41548576 -109234977 + AT_rich Low_complexity Low_complexity 1 22 0 2155 131 7 3 chr11 41549685 41549991 -109233562 - AluJb SINE Alu -5 307 1 1315 156 31 9 chr11 41549996 41550221 -109233332 - AluJo SINE Alu -24 288 59 286 229 60 24 chr11 41551450 41551533 -109232020 + L1MC5 LINE L1 7832 7917 -44 1868 105 0 87 chr11 41551535 41551682 -109231871 + AluSx SINE Alu 1 106 -206 2222 60 0 11 chr11 41551682 41551996 -109231557 + AluY SINE Alu 2 312 0 1868 105 0 87 chr11 41551996 41552181 -109231372 + AluSx SINE Alu 106 305 -7 1656 174 0 18 chr11 41552765 41553047 -109230506 + AluJo SINE Alu 12 288 -24 1250 186 68 24 chr11 41553209 41553457 -109230096 + AluJo SINE Alu 1 259 -53 1399 223 48 66 chr11 41553568 41554052 -109229501 + HAL1 LINE L1 1592 2066 -441 1159 176 50 9 chr11 41554234 41554455 -109229098 - MLT1D LTR MaLR -6 499 270 950 179 35 25 chr11 41554483 41554684 -109228869 - MLT1D LTR MaLR -302 203 1 1580 177 46 7 chr11 41554849 41555132 -109228421 + AluSx SINE Alu 1 294 -18 300 143 0 0 chr11 41555578 41555627 -109227926 - FLAM_A SINE Alu 0 133 85 1104 148 0 0 chr11 41556106 41556275 -109227278 + L1PA8 LINE L1 5993 6161 -11 6438 206 31 6 chr11 41556293 41558531 -109225022 + L1PA15 LINE L1 3888 6165 0 935 225 58 60 chr11 41558531 41558966 -109224587 - Looper DNA T2_type -1124 434 1 21 71 0 0 chr11 41559517 41559559 -109223994 + AT_rich Low_complexity Low_complexity 1 42 0 458 19 0 0 chr11 41560287 41560339 -109223214 + (TA)n Simple_repeat Simple_repeat 1 52 0 252 0 0 0 chr11 41560340 41560368 -109223185 + (T)n Simple_repeat Simple_repeat 1 28 0 224 359 51 17 chr11 41560997 41561114 -109222439 - MER5A DNA MER1_type 0 189 69 293 205 2 0 chr11 41561284 41561362 -109222191 + L1MA4A LINE L1 6219 6297 -5 2425 52 0 0 chr11 41561564 41561854 -109221699 - AluY SINE Alu -21 290 1 267 306 70 45 chr11 41562007 41562164 -109221389 + MIR SINE MIR 52 212 -50 233 293 0 13 chr11 41563127 41563202 -109220351 - L1MC5 LINE L1 -1178 6783 6710 273 174 28 76 chr11 41563927 41564071 -109219482 + (TTATA)n Simple_repeat Simple_repeat 5 141 0 211 337 22 11 chr11 41564087 41564179 -109219374 - MIR SINE MIR -140 122 30 2200 65 0 46 chr11 41564377 41564684 -109218869 - AluY SINE Alu -18 293 1 2155 124 0 0 chr11 41564994 41565301 -109218252 + AluSx SINE Alu 6 312 0 180 0 0 0 chr11 41566121 41566141 -109217412 + (TTA)n Simple_repeat Simple_repeat 3 22 0 16643 29 2 0 chr11 41566141 41568884 -109214669 - L1PA3 LINE L1 -18 6137 3391 4086 103 5 0 chr11 41569316 41569906 -109213647 - L1MA2 LINE L1 -9 6295 5703 881 210 0 6 chr11 41569907 41570083 -109213470 + L1P LINE L1 3707 3881 -2265 * 2102 60 4 0 chr11 41570082 41570350 -109213203 + L1PA8 LINE L1 5667 5935 -237 203 248 105 67 chr11 41571314 41571419 -109212134 - MIR3 SINE MIR -41 167 86 24 0 0 0 chr11 41571540 41571564 -109211989 + AT_rich Low_complexity Low_complexity 1 24 0 323 255 68 51 chr11 41572819 41573014 -109210539 + MLT1J LTR MaLR 28 262 -249 22 35 0 0 chr11 41573217 41573246 -109210307 + AT_rich Low_complexity Low_complexity 1 29 0 423 347 65 0 chr11 41573340 41573556 -109209997 - MIR SINE MIR -13 249 20 223 358 32 11 chr11 41573505 41573600 -109209953 + MIR SINE MIR 20 116 -146 * 213 326 184 23 chr11 41573722 41573983 -109209570 + L3 LINE CR1 1274 1576 -1 22 35 0 0 chr11 41574167 41574196 -109209357 + AT_rich Low_complexity Low_complexity 1 29 0 1020 225 0 14 chr11 41574250 41574463 -109209090 + MER6B DNA MER2_type 1 210 0 258 105 0 0 chr11 41575725 41575763 -109207790 + (TA)n Simple_repeat Simple_repeat 2 39 0 24 53 0 0 chr11 41576033 41576071 -109207482 + AT_rich Low_complexity Low_complexity 1 38 0 22 0 0 0 chr11 41576345 41576367 -109207186 + AT_rich Low_complexity Low_complexity 1 22 0 3122 119 13 33 chr11 41577346 41577420 -109206133 - MER75 DNA T2_type -3 511 437 1866 137 4 0 chr11 41577420 41577691 -109205862 + AluSx SINE Alu 1 272 -40 201 39 0 0 chr11 41577691 41577717 -109205836 + (CA)n Simple_repeat Simple_repeat 2 27 0 3122 119 13 33 chr11 41577717 41578162 -109205391 - MER75 DNA T2_type -75 439 1 517 284 152 65 chr11 41578599 41579028 -109204525 + MLT1C LTR MaLR 1 466 -1 1460 171 4 0 chr11 41579584 41579842 -109203711 + L1MA7 LINE L1 5320 5578 -713 1024 168 15 0 chr11 41579842 41580035 -109203518 + L1MA7 LINE L1 6070 6275 -16 190 397 13 0 chr11 41580279 41580357 -109203196 + L2 LINE L2 1481 1559 -1755 21 0 0 0 chr11 41580530 41580551 -109203002 + AT_rich Low_complexity Low_complexity 1 21 0 218 256 75 75 chr11 41582146 41582279 -109201274 - MIR SINE MIR 0 262 130 1979 143 3 3 chr11 41583716 41584023 -109199530 - AluSg SINE Alu -3 307 1 396 0 0 0 chr11 41584049 41584093 -109199460 + (CA)n Simple_repeat Simple_repeat 1 44 0 321 345 39 20 chr11 41584128 41584331 -109199222 - L1MC4a LINE L1 -1894 5914 5708 31 58 0 0 chr11 41584674 41584726 -109198827 + AT_rich Low_complexity Low_complexity 1 52 0 1373 198 35 79 chr11 41584993 41585311 -109198242 + AluJb SINE Alu 3 306 -6 387 0 0 0 chr11 41585725 41585768 -109197785 + (CA)n Simple_repeat Simple_repeat 2 44 0 2281 69 3 7 chr11 41587487 41587790 -109195763 + AluY SINE Alu 1 302 -9 24 0 0 0 chr11 41588487 41588511 -109195042 + AT_rich Low_complexity Low_complexity 1 24 0 255 276 164 8 chr11 41588597 41588731 -109194822 - MIR SINE MIR -30 232 78 846 185 117 27 chr11 41589312 41589534 -109194019 - MER45B DNA AcHobo -86 954 713 828 265 91 81 chr11 41589740 41590406 -109193147 - MER45 DNA AcHobo -279 674 1 24 0 0 0 chr11 41591785 41591809 -109191744 + AT_rich Low_complexity Low_complexity 1 24 0 845 228 0 0 chr11 41592911 41593078 -109190475 - AluJb SINE Alu -11 301 135 306 228 150 16 chr11 41593877 41594004 -109189549 - Charlie8 DNA MER1_type -2201 216 73 334 286 41 41 chr11 41594102 41594343 -109189210 - L1ME3 LINE L1 -77 6085 5745 323 287 115 57 chr11 41594435 41594679 -109188874 + L1MC/D LINE L1 4697 4954 -1192 210 89 36 54 chr11 41594834 41594890 -109188663 + (TATAA)n Simple_repeat Simple_repeat 5 59 0 227 335 84 49 chr11 41594951 41595154 -109188399 + L1MC/D LINE L1 5510 5719 -2089 1672 187 53 9 chr11 41595171 41595508 -109188045 - MLT1A1 LTR MaLR -2 363 12 237 308 0 0 chr11 41595517 41595582 -109187971 + L1MC/D LINE L1 5739 5803 -2005 506 292 86 18 chr11 41596064 41596375 -109187178 + L1ME LINE L1 5254 5586 -584 208 221 26 0 chr11 41596561 41596638 -109186915 + (TA)n Simple_repeat Simple_repeat 1 79 0 237 171 23 80 chr11 41596910 41596998 -109186555 + L1M2c LINE L1 1853 1933 -4786 5211 234 62 51 chr11 41597518 41597713 -109185840 + L1M2 LINE L1 9 200 -6011 5267 87 17 11 chr11 41597713 41598474 -109185079 - MER4E LTR ERV1 0 766 1 5211 234 62 51 chr11 41598474 41600299 -109183254 + L1M2 LINE L1 200 2039 -4172 492 97 0 0 chr11 41600340 41600412 -109183141 + Alu SINE Alu 220 291 -18 3549 210 47 38 chr11 41600539 41602072 -109181481 + L1M2 LINE L1 4304 5849 -527 2994 299 32 12 chr11 41602075 41603134 -109180419 + L1M2a LINE L1 11 948 -6220 * 3275 237 67 86 chr11 41603131 41603382 -109180171 + L1M2a LINE L1 2017 2271 -4896 771 186 0 0 chr11 41603382 41603506 -109180047 - FLAM_C SINE Alu -19 124 1 3275 237 67 86 chr11 41603506 41605260 -109178293 + L1M2a LINE L1 2271 4105 -3062 491 307 80 33 chr11 41605332 41605781 -109177772 - L1M1 LINE L1 -4114 3451 2982 4814 250 77 49 chr11 41605793 41607476 -109176077 - L1M1 LINE L1 -5118 2448 720 443 323 12 6 chr11 41607581 41607748 -109175805 + L1MEc LINE L1 111 278 -6118 454 296 63 39 chr11 41608117 41608323 -109175230 - MIR SINE MIR -3 259 49 186 256 67 22 chr11 41608923 41609013 -109174540 - L2 LINE L2 -1585 1729 1636 234 81 0 0 chr11 41609326 41609363 -109174190 + (TTCC)n Simple_repeat Simple_repeat 4 40 0 1373 173 59 0 chr11 41609366 41609621 -109173932 - AluJb SINE Alu -5 307 38 1328 303 76 46 chr11 41610001 41611045 -109172508 + L2 LINE L2 2197 3311 -2 260 269 19 119 chr11 41611327 41611487 -109172066 + MLT1H LTR MaLR 406 549 0 34 89 0 0 chr11 41611883 41611973 -109171580 + AT_rich Low_complexity Low_complexity 1 90 0 2295 62 3 0 chr11 41612929 41613218 -109170335 + AluY SINE Alu 3 292 -19 185 323 75 11 chr11 41613834 41613927 -109169626 - L2 LINE L2 -67 3205 3107 218 331 69 15 chr11 41614092 41614222 -109169331 + MIR SINE MIR 94 230 -32 1792 107 0 11 chr11 41614222 41614492 -109169061 - AluSx SINE Alu -8 304 38 205 362 0 0 chr11 41615885 41615954 -109167599 + MIR SINE MIR 72 140 -122 1406 204 16 25 chr11 41615962 41616223 -109167330 + L1M4 LINE L1 5321 5580 -598 2139 102 0 16 chr11 41616223 41616528 -109167025 - AluSg SINE Alu -10 300 1 1406 204 16 25 chr11 41616528 41616580 -109166973 + L1M4 LINE L1 5580 5631 -547 26 0 0 0 chr11 41616793 41616819 -109166734 + AT_rich Low_complexity Low_complexity 1 26 0 1298 183 41 16 chr11 41617158 41617450 -109166103 - MER61B LTR ERV1 -28 396 5 617 206 127 42 chr11 41617610 41617799 -109165754 - MER3 DNA MER1_type 0 209 5 387 264 123 26 chr11 41618230 41618385 -109165168 - MIR SINE MIR -36 226 57 1735 172 0 43 chr11 41618987 41619313 -109164240 - AluSx SINE Alu 0 312 1 22 0 0 0 chr11 41619422 41619444 -109164109 + AT_rich Low_complexity Low_complexity 1 22 0 7758 19 0 0 chr11 41619807 41620909 -109162644 - L1PA2 LINE L1 -2 6153 5052 10332 25 1 0 chr11 41620909 41622130 -109161423 + L1PA2 LINE L1 3819 5040 -1106 184 306 82 12 chr11 41622248 41622333 -109161220 + MIR SINE MIR 121 211 -51 705 284 100 0 chr11 41622959 41623220 -109160333 + MLT1H LTR MaLR 12 298 -251 248 251 156 45 chr11 41623255 41623431 -109160122 + MLT1H LTR MaLR 332 527 -28 630 295 154 4 chr11 41623431 41623665 -109159888 - MLT1H LTR MaLR 0 549 281 326 309 38 60 chr11 41623735 41624288 -109159265 + L1MEc LINE L1 1213 1753 -4643 233 317 30 18 chr11 41624622 41624786 -109158767 + L1MEc LINE L1 2135 2300 -4096 2158 75 24 17 chr11 41624831 41625125 -109158428 + AluY SINE Alu 1 296 -15 377 294 24 29 chr11 41625208 41625378 -109158175 + L1MEc LINE L1 2368 2536 -3679 1981 140 32 57 chr11 41626007 41626379 -109157174 - THE1B LTR MaLR -1 363 1 11484 97 1 27 chr11 41626384 41628000 -109155553 - THE1B-int LTR MaLR -6 1574 1 2041 157 33 30 chr11 41628000 41628363 -109155190 - THE1B LTR MaLR 0 364 1 667 158 9 9 chr11 41628507 41628621 -109154932 + MLT1D LTR MaLR 1 114 -391 4189 109 15 0 chr11 41628621 41629237 -109154316 - L1PB1 LINE L1 -1 6150 5526 207 176 0 0 chr11 41629347 41629381 -109154172 + (CA)n Simple_repeat Simple_repeat 1 34 0 639 373 88 18 chr11 41630443 41630744 -109152809 + L2 LINE L2 2367 2645 -669 2111 73 38 14 chr11 41630744 41631032 -109152521 - AluY SINE Alu -16 295 1 639 373 88 18 chr11 41631032 41631301 -109152252 + L2 LINE L2 2645 2977 -337 243 337 169 0 chr11 41632240 41632406 -109151147 - L2 LINE L2 -246 3067 2874 2122 107 17 0 chr11 41632431 41632722 -109150831 - AluSp SINE Alu -17 296 1 1959 99 0 18 chr11 41632820 41633104 -109150449 - AluSc SINE Alu -4 305 27 474 208 0 0 chr11 41633204 41633305 -109150248 - L1MA9 LINE L1 -38 6274 6174 23 33 0 0 chr11 41633516 41633546 -109150007 + AT_rich Low_complexity Low_complexity 1 30 0 234 0 0 0 chr11 41633549 41633575 -109149978 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 340 64 0 0 chr11 41633581 41633628 -109149925 - L1PA3 LINE L1 -3 6152 6106 1716 169 10 3 chr11 41634567 41634863 -109148690 + AluSx SINE Alu 5 302 -10 32 75 0 0 chr11 41634975 41635042 -109148511 + AT_rich Low_complexity Low_complexity 1 67 0 210 213 21 0 chr11 41635793 41635840 -109147713 + A-rich Low_complexity Low_complexity 1 48 0 29 47 0 0 chr11 41635900 41635943 -109147610 + AT_rich Low_complexity Low_complexity 1 43 0 314 220 104 55 chr11 41636332 41636496 -109147057 + L1MC4a LINE L1 7347 7540 -268 394 271 36 70 chr11 41636771 41637052 -109146501 + L1MC4 LINE L1 7672 7933 -28 40 49 0 0 chr11 41637735 41637796 -109145757 + AT_rich Low_complexity Low_complexity 1 61 0 230 379 126 11 chr11 41638629 41638819 -109144734 + L3 LINE CR1 1088 1299 -278 29 47 0 0 chr11 41640427 41640470 -109143083 + AT_rich Low_complexity Low_complexity 1 43 0 1031 266 183 52 chr11 41640507 41641076 -109142477 + MLT1E2 LTR MaLR 1 565 -61 272 322 197 7 chr11 41641450 41641602 -109141951 - L2 LINE L2 -177 3136 2956 23 33 0 0 chr11 41641683 41641713 -109141840 + AT_rich Low_complexity Low_complexity 1 30 0 2780 13 0 6 chr11 41642571 41642888 -109140665 - AluYb8 SINE Alu -3 315 1 3191 150 16 69 chr11 41642896 41643561 -109139992 + L1PA16 LINE L1 5527 6156 -10 647 280 26 33 chr11 41643579 41643850 -109139703 + L1ME3A LINE L1 5894 6162 -8 906 144 11 8 chr11 41644433 41644699 -109138854 + CT-rich Low_complexity Low_complexity 1 267 0 2110 124 7 3 chr11 41644719 41645026 -109138527 - AluSx SINE Alu -4 308 1 192 200 0 0 chr11 41647186 41647236 -109136317 + (TA)n Simple_repeat Simple_repeat 1 50 0 419 306 94 55 chr11 41647340 41647615 -109135938 + MER102a DNA MER1_type 45 330 0 716 213 22 70 chr11 41647711 41647941 -109135612 + MER20 DNA MER1_type 1 219 0 23 78 0 0 chr11 41649158 41649209 -109134344 + AT_rich Low_complexity Low_complexity 1 51 0 2717 265 76 26 chr11 41649218 41650265 -109133288 + L1MC4 LINE L1 6459 7570 -472 2008 120 11 0 chr11 41650265 41650578 -109132975 + AluSp SINE Alu 1 316 0 2717 265 76 26 chr11 41650578 41650666 -109132887 + L1MC4 LINE L1 7570 7652 -390 22 88 0 0 chr11 41650732 41650789 -109132764 + AT_rich Low_complexity Low_complexity 1 57 0 264 196 39 0 chr11 41651190 41651241 -109132312 - LTR52 LTR ERVL -19 402 350 2558 256 87 9 chr11 41651243 41651912 -109131641 - HERVL74 LTR ERVL -2858 2827 2107 581 186 0 0 chr11 41652099 41652201 -109131352 - HERVL74 LTR ERVL -3587 2098 1997 15450 34 7 0 chr11 41652201 41654821 -109128732 + L1PA3 LINE L1 3523 6148 -7 568 268 200 17 chr11 41655301 41655536 -109128017 - HERVL74 LTR ERVL -3688 1997 1720 286 177 32 16 chr11 41655521 41655583 -109127970 + HERVL74 LTR ERVL 1216 1278 -4407 * 767 250 20 10 chr11 41655720 41655924 -109127629 - LTR52 LTR ERVL -41 380 175 618 270 32 1 chr11 41656356 41656532 -109127021 - MLT1-int LTR MaLR -773 598 403 21 0 0 0 chr11 41656655 41656676 -109126877 + AT_rich Low_complexity Low_complexity 1 21 0 275 374 31 31 chr11 41658290 41658453 -109125100 - MIR3 SINE MIR -23 185 23 340 313 17 0 chr11 41658713 41658828 -109124725 + MER5C DNA MER1_type 1 117 -207 27 0 0 0 chr11 41658988 41659015 -109124538 + AT_rich Low_complexity Low_complexity 1 27 0 1563 202 7 14 chr11 41660775 41661057 -109122496 + AluJo SINE Alu 1 280 -32 2579 149 45 8 chr11 41661078 41661548 -109122005 + L1MA4 LINE L1 5679 6165 -135 385 204 0 20 chr11 41661548 41661646 -109121907 + L1MA3 LINE L1 6209 6304 -1 1654 210 44 44 chr11 41663250 41663683 -109119870 + Tigger2a DNA MER2_type 1 433 -1 360 0 0 0 chr11 41663769 41663809 -109119744 + (CA)n Simple_repeat Simple_repeat 1 40 0 1291 246 120 54 chr11 41664792 41665552 -109118001 - L1M4 LINE L1 -2081 4065 3256 34 65 0 0 chr11 41667416 41667478 -109116075 + AT_rich Low_complexity Low_complexity 1 62 0 431 295 30 93 chr11 41667968 41668236 -109115317 - L2 LINE L2 -453 2861 2611 1233 147 13 38 chr11 41668603 41668841 -109114712 - AluY SINE Alu -79 232 1 1446 221 39 6 chr11 41668841 41669153 -109114400 + MLT1A1 LTR MaLR 44 365 0 934 222 7 7 chr11 41669824 41670099 -109113454 - AluSx SINE Alu 0 312 38 226 329 15 0 chr11 41670243 41670328 -109113225 - MIR SINE MIR -81 127 64 372 315 68 59 chr11 41671714 41672035 -109111518 + L2 LINE L2 2990 3313 0 2182 94 0 7 chr11 41672195 41672494 -109111059 - AluSx SINE Alu -15 297 1 472 349 35 15 chr11 41672564 41672762 -109110791 + MIR SINE MIR 17 218 -44 29 47 0 0 chr11 41672789 41672832 -109110721 + AT_rich Low_complexity Low_complexity 1 43 0 982 88 14 0 chr11 41673015 41673163 -109110390 - L1PA2 LINE L1 -1 6154 6005 416 252 68 58 chr11 41673874 41674080 -109109473 + L2 LINE L2 3106 3313 0 2146 95 0 7 chr11 41674244 41674539 -109109014 - AluSx SINE Alu -19 293 1 549 328 35 15 chr11 41674609 41674807 -109108746 + MIR SINE MIR 17 218 -44 29 47 0 0 chr11 41674834 41674877 -109108676 + AT_rich Low_complexity Low_complexity 1 43 0 3531 19 0 0 chr11 41675060 41675471 -109108082 - L1PA2 LINE L1 -1 6154 5744 1527 154 199 121 chr11 41675571 41676720 -109106833 + LTR12 LTR ERV1 481 2435 -3 665 207 0 0 chr11 41676720 41676855 -109106698 + L1MA6 LINE L1 4950 5084 -1062 344 206 0 0 chr11 41676856 41676924 -109106629 - AluY SINE Alu -5 297 230 1184 87 12 6 chr11 41676924 41677085 -109106468 - AluY SINE Alu -149 162 1 4452 176 46 33 chr11 41677085 41678289 -109105264 + L1MA6 LINE L1 5077 6299 -1 219 307 79 44 chr11 41679176 41679290 -109104263 + MIR SINE MIR 79 196 -66 269 243 291 10 chr11 41679538 41679641 -109103912 + L2 LINE L2 3137 3268 -4 218 337 56 11 chr11 41679813 41679902 -109103651 - L2 LINE L2 -33 3280 3188 368 323 64 18 chr11 41679951 41680171 -109103382 - MIR SINE MIR -13 249 20 1899 180 37 37 chr11 41680600 41681151 -109102402 - MLT2A2 LTR ERVL 0 554 1 3018 172 26 4 chr11 41681152 41682168 -109101385 - L1P4 LINE L1 -435 5731 4697 222 241 19 0 chr11 41682623 41682677 -109100876 + (TATATG)n Simple_repeat Simple_repeat 6 60 0 33 43 0 0 chr11 41683415 41683462 -109100091 + AT_rich Low_complexity Low_complexity 1 47 0 243 0 0 0 chr11 41684197 41684224 -109099329 + (T)n Simple_repeat Simple_repeat 1 27 0 1513 204 31 45 chr11 41684406 41684448 -109099105 + MLT1A1 LTR MaLR 13 54 -311 2114 102 10 26 chr11 41684448 41684761 -109098792 - AluY SINE Alu -3 308 1 1513 204 31 45 chr11 41684761 41685076 -109098477 + MLT1A1 LTR MaLR 54 365 0 2115 125 3 0 chr11 41685751 41686062 -109097491 - AluSx SINE Alu 0 312 1 431 281 115 75 chr11 41686062 41686340 -109097213 + L2 LINE L2 3024 3312 -1 252 0 0 0 chr11 41686373 41686401 -109097152 + (CA)n Simple_repeat Simple_repeat 2 29 0 22 0 0 0 chr11 41688192 41688214 -109095339 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr11 41688898 41688922 -109094631 + AT_rich Low_complexity Low_complexity 1 24 0 189 331 39 66 chr11 41691271 41691323 -109092230 - MIR SINE MIR -59 203 151 2643 22 3 6 chr11 41691323 41691641 -109091912 - AluYb8 SINE Alu -1 317 1 189 331 39 66 chr11 41691641 41691769 -109091784 - MIR SINE MIR -111 151 28 1150 195 91 26 chr11 41691881 41692188 -109091365 - L1MB7 LINE L1 -7 6177 5851 339 243 40 72 chr11 41692326 41692389 -109091164 + MER103 DNA DNA 17 81 -85 2229 79 0 0 chr11 41692389 41692679 -109090874 - AluSg SINE Alu -20 290 1 339 243 40 72 chr11 41692679 41692767 -109090786 + MER103 DNA DNA 81 163 -3 204 365 26 9 chr11 41692854 41692969 -109090584 + MIR SINE MIR 32 148 -114 2763 170 85 11 chr11 41693485 41694039 -109089514 - L1MB1 LINE L1 0 6168 5574 22 0 0 0 chr11 41694292 41694314 -109089239 + AT_rich Low_complexity Low_complexity 1 22 0 28 61 0 0 chr11 41694659 41694708 -109088845 + AT_rich Low_complexity Low_complexity 1 49 0 499 267 79 41 chr11 41695043 41695309 -109088244 - L1ME3A LINE L1 0 6170 5895 665 297 134 18 chr11 41695333 41695842 -109087711 - L1ME3A LINE L1 -349 5821 5254 36 100 0 0 chr11 41696049 41696169 -109087384 + AT_rich Low_complexity Low_complexity 1 120 0 2221 206 62 52 chr11 41696197 41696550 -109087003 + L1MC3 LINE L1 6637 6985 -800 1982 138 42 33 chr11 41696550 41696911 -109086642 - THE1B LTR MaLR 0 364 1 10951 106 14 1 chr11 41696911 41698472 -109085081 - THE1B-int LTR MaLR 0 1580 1 2171 125 42 31 chr11 41698472 41698832 -109084721 - THE1B LTR MaLR 0 364 1 2221 206 62 52 chr11 41698832 41699088 -109084465 + L1MC3 LINE L1 6984 7254 -531 313 155 35 0 chr11 41699095 41699153 -109084400 + MSTA LTR MaLR 2 61 -367 551 328 25 20 chr11 41700886 41701090 -109082463 - MIR SINE MIR -16 246 42 22 35 0 0 chr11 41701629 41701658 -109081895 + AT_rich Low_complexity Low_complexity 1 29 0 2211 234 41 44 chr11 41701665 41701980 -109081573 + L1MA3 LINE L1 5365 5679 -626 2051 181 35 0 chr11 41701980 41702355 -109081198 - MLT1B LTR MaLR -2 388 1 2211 234 41 44 chr11 41702355 41702764 -109080789 + L1MA3 LINE L1 5679 6087 -218 1184 339 117 27 chr11 41702889 41703897 -109079656 + L2 LINE L2 237 1335 -1979 9251 253 27 21 chr11 41703978 41706528 -109077025 - L1PA12 LINE L1 -1337 5512 2900 2833 13 0 0 chr11 41706528 41706839 -109076714 + AluYa5 SINE Alu 1 311 0 9251 253 27 21 chr11 41706839 41708326 -109075227 - L1PA12 LINE L1 -3949 2900 1423 2126 130 3 9 chr11 41708454 41708769 -109074784 - AluSp SINE Alu 0 313 1 2404 194 2 11 chr11 41709066 41709515 -109074038 - L1PA12 LINE L1 -6404 445 1 348 347 38 45 chr11 41709774 41710187 -109073366 + L2 LINE L2 2227 2707 -607 512 285 51 73 chr11 41710496 41710770 -109072783 + L2 LINE L2 2611 2878 -436 34 65 0 0 chr11 41711254 41711316 -109072237 + AT_rich Low_complexity Low_complexity 1 62 0 347 277 58 36 chr11 41711689 41711826 -109071727 + L1MCb LINE L1 1040 1179 -4866 25 75 0 0 chr11 41712670 41712723 -109070830 + AT_rich Low_complexity Low_complexity 1 53 0 32 26 0 0 chr11 41712979 41713018 -109070535 + AT_rich Low_complexity Low_complexity 1 39 0 363 268 31 10 chr11 41713174 41713271 -109070282 - L2 LINE L2 -1 3312 3214 380 338 40 7 chr11 41713530 41713678 -109069875 - L2 LINE L2 -631 2683 2531 21 57 0 0 chr11 41713781 41713816 -109069737 + AT_rich Low_complexity Low_complexity 1 35 0 26 50 0 0 chr11 41713932 41713972 -109069581 + AT_rich Low_complexity Low_complexity 1 40 0 366 23 0 0 chr11 41714612 41714655 -109068898 + (TA)n Simple_repeat Simple_repeat 1 43 0 1014 132 7 0 chr11 41714687 41714839 -109068714 - AluSg/x SINE Alu -22 290 138 894 121 15 0 chr11 41714839 41714971 -109068582 + AluSq/x SINE Alu 7 140 -173 200 111 22 0 chr11 41715564 41715609 -109067944 + (AAATG)n Simple_repeat Simple_repeat 5 50 0 1760 218 33 0 chr11 41716206 41716568 -109066985 - MLT1B LTR MaLR -16 374 1 2154 175 82 13 chr11 41716569 41717059 -109066494 + L1MA3 LINE L1 5673 6198 -107 2375 90 0 0 chr11 41717087 41717388 -109066165 - AluY SINE Alu -10 301 1 592 272 45 48 chr11 41717401 41717691 -109065862 + L1ME1 LINE L1 5834 6122 -44 381 258 18 43 chr11 41717583 41717746 -109065807 + L1MA10 LINE L1 6175 6333 -1 * 1182 217 149 41 chr11 41718076 41718455 -109065098 - MLT1C LTR MaLR -7 460 33 216 0 0 0 chr11 41718455 41718479 -109065074 + (TTG)n Simple_repeat Simple_repeat 1 24 0 1182 217 149 41 chr11 41718479 41718510 -109065043 - MLT1C LTR MaLR -434 33 7 1495 233 35 94 chr11 41718516 41719006 -109064547 - MLT1C-int LTR MaLR 0 1371 911 3408 230 30 32 chr11 41719149 41720031 -109063522 - MLT1C-int LTR MaLR -490 881 2 688 290 50 43 chr11 41720034 41720337 -109063216 - MLT1C LTR MaLR -2 465 161 22 0 0 0 chr11 41720538 41720560 -109062993 + AT_rich Low_complexity Low_complexity 1 22 0 545 212 88 15 chr11 41720632 41720769 -109062784 - MLT1C LTR MaLR -316 151 5 186 103 0 0 chr11 41721516 41721545 -109062008 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 258 216 57 11 chr11 41722116 41722204 -109061349 + L1ME LINE L1 5768 5859 -262 21 0 0 0 chr11 41722213 41722234 -109061319 + AT_rich Low_complexity Low_complexity 1 21 0 390 322 62 19 chr11 41722546 41722613 -109060940 - MIR SINE MIR -1 261 198 8504 106 24 26 chr11 41722613 41723902 -109059651 + HSMAR1 DNA Mariner 2 1287 0 390 322 62 19 chr11 41723902 41724045 -109059508 - MIR SINE MIR -64 198 42 195 204 0 0 chr11 41724212 41724256 -109059297 + (CA)n Simple_repeat Simple_repeat 1 44 0 616 147 133 20 chr11 41725000 41725150 -109058403 + L1MA8 LINE L1 6124 6290 -1 293 0 0 26 chr11 41725856 41725894 -109057659 + (TG)n Simple_repeat Simple_repeat 2 38 0 450 304 208 21 chr11 41726481 41726817 -109056736 + L2 LINE L2 2359 2757 -557 3848 187 45 23 chr11 41726830 41728275 -109055278 + L1PB4 LINE L1 4316 5782 -374 230 0 0 0 chr11 41728310 41728339 -109055214 - L1PB4 LINE L1 -370 5786 5758 2003 156 39 0 chr11 41728347 41728707 -109054846 + L1PB4 LINE L1 5783 6156 0 616 309 125 36 chr11 41728707 41729193 -109054360 + L2 LINE L2 2776 3313 0 204 299 60 0 chr11 41730032 41730099 -109053454 + L2 LINE L2 3236 3306 -7 289 362 127 18 chr11 41730350 41730579 -109052974 + MIR SINE MIR 9 262 0 412 301 54 24 chr11 41730809 41730975 -109052578 + MIR SINE MIR 15 185 -77 458 291 58 6 chr11 41731023 41731195 -109052358 - MIR SINE MIR -69 193 13 217 266 0 2 chr11 41731620 41731673 -109051880 + MIR SINE MIR 61 112 -96 229 195 0 0 chr11 41731673 41731714 -109051839 - MSTA LTR MaLR 0 428 388 735 165 0 0 chr11 41731720 41731847 -109051706 - MSTA-int LTR MaLR -1097 554 428 * 1688 154 3 0 chr11 41731830 41732115 -109051438 - MSTA-int LTR MaLR -1365 286 1 1892 168 128 8 chr11 41732115 41732497 -109051056 - MSTA LTR MaLR 0 428 1 1400 225 65 105 chr11 41732556 41733488 -109050065 - LTR28 LTR ERV1 0 1020 1 214 244 25 17 chr11 41735394 41735513 -109048040 + (TATAA)n Simple_repeat Simple_repeat 5 124 0 282 125 0 0 chr11 41736571 41736619 -109046934 + (CA)n Simple_repeat Simple_repeat 1 48 0 536 290 59 31 chr11 41736906 41737161 -109046392 + MIR SINE MIR 1 262 0 607 118 0 0 chr11 41737447 41737540 -109046013 + MLT2A2 LTR ERVL 1 93 -360 36764 74 11 17 chr11 41737540 41740654 -109042899 + HERVL-A1 LTR ERVL 810 3887 -1767 2482 70 0 13 chr11 41740654 41740969 -109042584 + AluY SINE Alu 1 311 0 36764 74 11 17 chr11 41740969 41742727 -109040826 + HERVL-A1 LTR ERVL 3887 5654 0 2267 115 75 11 chr11 41742729 41743104 -109040449 + MLT2A1 LTR ERVL 6 404 -40 384 90 29 0 chr11 41743154 41743170 -109040383 + MLT2A2 LTR ERVL 399 413 -40 351 0 0 0 chr11 41743170 41743209 -109040344 + (CA)n Simple_repeat Simple_repeat 2 40 0 384 90 29 0 chr11 41743209 41743262 -109040291 + MLT2A2 LTR ERVL 413 453 0 270 0 0 0 chr11 41744113 41744143 -109039410 + (TA)n Simple_repeat Simple_repeat 2 31 0 1021 139 12 0 chr11 41744151 41744317 -109039236 - AluSg/x SINE Alu 0 312 145 952 123 14 0 chr11 41744318 41744456 -109039097 + AluSq/x SINE Alu 1 140 -172 200 111 22 0 chr11 41745055 41745100 -109038453 + (AAATG)n Simple_repeat Simple_repeat 5 50 0 2284 72 16 3 chr11 41746477 41746784 -109036769 - AluY SINE Alu 0 311 1 21 36 0 0 chr11 41746797 41746825 -109036728 + AT_rich Low_complexity Low_complexity 1 28 0 530 231 52 8 chr11 41747531 41747665 -109035888 + MER5A DNA MER1_type 2 141 -48 610 222 8 0 chr11 41747665 41747782 -109035771 + MER63 DNA MER1_type 43 786 -50 393 337 50 33 chr11 41747849 41748030 -109035523 + MIR SINE MIR 13 196 -66 11730 160 64 19 chr11 41749682 41750928 -109032625 + L1M1 LINE L1 1225 2414 -5151 1943 102 74 0 chr11 41750928 41751212 -109032341 + AluY SINE Alu 1 305 -6 11730 160 64 19 chr11 41751212 41752246 -109031307 + L1M1 LINE L1 2414 3606 -3959 940 126 0 15 chr11 41752249 41752384 -109031169 + AluSq/x SINE Alu 1 133 -179 8078 85 35 3 chr11 41752394 41752552 -109031001 - L1P3 LINE L1 -351 5803 5652 342 0 0 0 chr11 41752552 41752590 -109030963 + (TA)n Simple_repeat Simple_repeat 1 38 0 8078 85 35 3 chr11 41752590 41754009 -109029544 - L1P3 LINE L1 -502 5652 4178 518 69 42 0 chr11 41754008 41754080 -109029473 + L1P3 LINE L1 4089 4163 -1983 * 2050 137 0 6 chr11 41754105 41754419 -109029134 + AluSx SINE Alu 1 312 0 357 279 66 50 chr11 41755841 41756099 -109027454 + L1MC4 LINE L1 7567 7828 -214 225 65 0 0 chr11 41756173 41756204 -109027349 + (CA)n Simple_repeat Simple_repeat 2 32 0 25 0 0 0 chr11 41756381 41756406 -109027147 + AT_rich Low_complexity Low_complexity 1 25 0 2382 66 0 0 chr11 41756504 41756806 -109026747 - AluY SINE Alu -9 302 1 279 365 81 58 chr11 41757036 41757395 -109026158 + L2 LINE L2 130 496 -2818 270 261 45 30 chr11 41757396 41757509 -109026044 - MER58B DNA MER1_type -1 340 103 4130 26 10 12 chr11 41757541 41758048 -109025505 - L1PA4 LINE L1 -2 6153 5648 357 24 0 0 chr11 41758064 41758106 -109025447 + (CA)n Simple_repeat Simple_repeat 2 43 0 2491 27 3 0 chr11 41758225 41758521 -109025032 - L1PA5 LINE L1 -212 5942 5646 267 31 0 0 chr11 41758535 41758567 -109024986 + (CA)n Simple_repeat Simple_repeat 2 33 0 1514 307 214 25 chr11 41758698 41759501 -109024052 + L2 LINE L2 583 1233 -2081 1976 139 0 16 chr11 41759501 41759530 -109024023 - AluSx SINE Alu -1 311 283 333 0 0 0 chr11 41759530 41759567 -109023986 + (TG)n Simple_repeat Simple_repeat 2 38 0 1976 139 0 16 chr11 41759567 41759853 -109023700 - AluSx SINE Alu -29 283 1 1514 307 214 25 chr11 41759853 41760359 -109023194 + L2 LINE L2 1233 2139 -1175 429 298 43 58 chr11 41760437 41760625 -109022928 + Charlie2 DNA MER1_type 35 219 -2643 21 71 0 0 chr11 41761588 41761630 -109021923 + AT_rich Low_complexity Low_complexity 1 42 0 2181 77 0 17 chr11 41763094 41763393 -109020160 + AluY SINE Alu 1 294 -17 185 357 0 29 chr11 41763756 41763826 -109019727 - MIR SINE MIR -119 89 22 46 19 0 0 chr11 41763933 41763986 -109019567 + AT_rich Low_complexity Low_complexity 1 53 0 21 82 0 0 chr11 41764682 41764731 -109018822 + AT_rich Low_complexity Low_complexity 1 49 0 47 82 0 0 chr11 41765315 41765425 -109018128 + AT_rich Low_complexity Low_complexity 1 110 0 24 53 0 0 chr11 41765536 41765574 -109017979 + AT_rich Low_complexity Low_complexity 1 38 0 204 358 21 11 chr11 41765597 41765692 -109017861 + MIR SINE MIR 17 112 -150 25 31 0 0 chr11 41765834 41765866 -109017687 + AT_rich Low_complexity Low_complexity 1 32 0 2026 121 7 0 chr11 41766865 41767154 -109016399 + AluSq SINE Alu 1 291 -22 2439 54 0 0 chr11 41768274 41768571 -109014982 + AluY SINE Alu 1 297 -14 23 0 0 0 chr11 41768580 41768603 -109014950 + AT_rich Low_complexity Low_complexity 1 23 0 915 120 23 17 chr11 41770168 41770343 -109013210 + CT-rich Low_complexity Low_complexity 3 178 0 280 284 12 0 chr11 41770434 41770515 -109013038 + L2 LINE L2 3228 3309 -4 401 362 83 5 chr11 41770639 41770857 -109012696 - MIR SINE MIR 0 262 28 440 369 101 23 chr11 41771234 41771670 -109011883 + L2 LINE L2 1711 2180 -1134 791 152 23 15 chr11 41771688 41771958 -109011595 + CT-rich Low_complexity Low_complexity 1 272 0 1525 181 30 0 chr11 41772020 41772285 -109011268 + AluJb SINE Alu 1 273 -39 411 21 0 0 chr11 41772289 41772337 -109011216 + (CA)n Simple_repeat Simple_repeat 1 48 0 236 338 202 10 chr11 41772367 41772565 -109010988 + L2 LINE L2 2268 2503 -811 2151 141 13 11 chr11 41772597 41772974 -109010579 - L1MA8 LINE L1 -5 6286 5909 989 188 39 67 chr11 41772978 41773211 -109010342 - MER8 DNA MER2_type 0 239 12 1613 141 8 0 chr11 41773211 41773473 -109010080 - L1MA8 LINE L1 -385 5906 5643 426 393 62 4 chr11 41773475 41773717 -109009836 + L2 LINE L2 2517 2772 -542 2504 30 0 7 chr11 41773721 41774020 -109009533 + AluY SINE Alu 1 297 -14 321 312 8 23 chr11 41774142 41774319 -109009234 + GA-rich Low_complexity Low_complexity 1 174 0 1599 111 9 87 chr11 41774375 41774709 -109008844 + AluY SINE Alu 4 311 0 245 241 58 46 chr11 41774749 41774836 -109008717 + MLT1G1 LTR MaLR 508 595 0 836 282 52 33 chr11 41774904 41775412 -109008141 - L1MEd LINE L1 -3429 3135 2613 2124 118 10 0 chr11 41775412 41775717 -109007836 + AluSg SINE Alu 1 308 -2 836 282 52 33 chr11 41775717 41775782 -109007771 - L1MEd LINE L1 -3951 2613 2551 22 35 0 0 chr11 41775870 41775899 -109007654 + AT_rich Low_complexity Low_complexity 1 29 0 541 304 98 21 chr11 41776160 41776836 -109006717 - L1MEd LINE L1 -4640 2105 1340 278 258 119 20 chr11 41776945 41777096 -109006457 - L1MEd LINE L1 -4956 1089 924 658 161 6 0 chr11 41778790 41778951 -109004602 + (TA)n Simple_repeat Simple_repeat 1 162 0 1834 139 0 29 chr11 41779458 41779768 -109003785 + AluSx SINE Alu 1 301 -11 1118 243 31 7 chr11 41779809 41780097 -109003456 - MLT1A1 LTR MaLR 0 365 71 565 231 37 48 chr11 41780286 41780662 -109002891 - pTR5 LTR ERV1 -1326 1112 741 362 333 8 8 chr11 41780759 41780876 -109002677 + MIR SINE MIR 27 143 -119 414 296 68 0 chr11 41780895 41781027 -109002526 + MLT1G1 LTR MaLR 10 150 -445 342 236 49 63 chr11 41781246 41781369 -109002184 + MLT1H1 LTR MaLR 374 481 -74 2164 85 3 7 chr11 41781369 41781676 -109001877 + AluY SINE Alu 1 306 -5 342 236 49 63 chr11 41781676 41781750 -109001803 + MLT1H1 LTR MaLR 481 554 -1 1896 150 0 17 chr11 41781843 41782137 -109001416 + AluSx SINE Alu 4 292 -20 21 71 0 0 chr11 41782279 41782321 -109001232 + AT_rich Low_complexity Low_complexity 1 42 0 649 259 132 61 chr11 41782570 41783010 -109000543 + MLT1H LTR MaLR 72 542 -7 27 0 0 0 chr11 41783022 41783049 -109000504 + AT_rich Low_complexity Low_complexity 1 27 0 34 0 0 0 chr11 41783221 41783255 -109000298 + AT_rich Low_complexity Low_complexity 1 34 0 27 0 0 0 chr11 41783719 41783746 -108999807 + AT_rich Low_complexity Low_complexity 1 27 0 288 348 133 6 chr11 41785690 41785871 -108997682 - MIR SINE MIR -56 206 3 311 298 0 0 chr11 41785932 41786012 -108997541 + MER5B DNA MER1_type 84 152 -26 24 0 0 0 chr11 41787284 41787308 -108996245 + AT_rich Low_complexity Low_complexity 1 24 0 1443 173 7 7 chr11 41787317 41787606 -108995947 + L1MA4A LINE L1 6010 6298 -5 278 327 24 55 chr11 41788374 41788539 -108995014 + MIR3 SINE MIR 43 202 -6 249 240 10 20 chr11 41789572 41789632 -108993921 + (TA)n Simple_repeat Simple_repeat 1 61 -38 185 0 40 0 chr11 41789632 41789657 -108993896 + (TATAG)n Simple_repeat Simple_repeat 3 28 0 249 240 10 20 chr11 41789657 41789696 -108993857 + (TA)n Simple_repeat Simple_repeat 61 99 0 444 207 0 0 chr11 41790052 41790134 -108993419 - Tigger5 DNA MER2_type 0 2323 2242 357 244 0 0 chr11 41790211 41790289 -108993264 - Tigger5 DNA MER2_type -2244 79 2 2078 70 3 60 chr11 41790801 41791101 -108992452 + AluSg SINE Alu 1 283 -27 2318 66 3 0 chr11 41791167 41791456 -108992097 + AluY SINE Alu 1 290 -21 822 273 44 20 chr11 41791509 41791758 -108991795 - MIR SINE MIR -4 258 4 211 284 111 12 chr11 41791758 41791838 -108991715 - L2 LINE L2 -1001 2313 2226 2007 66 90 14 chr11 41791843 41792132 -108991421 + AluY SINE Alu 1 311 0 29 78 0 0 chr11 41792398 41792462 -108991091 + AT_rich Low_complexity Low_complexity 1 64 0 202 390 50 0 chr11 41792798 41792898 -108990655 - L2 LINE L2 -552 2762 2658 26 30 0 0 chr11 41794258 41794291 -108989262 + AT_rich Low_complexity Low_complexity 1 33 0 185 200 75 0 chr11 41794489 41794529 -108989024 - L2 LINE L2 0 3313 3271 866 236 12 45 chr11 41794634 41794876 -108988677 + L1M3a LINE L1 1 234 -5721 255 173 0 0 chr11 41794987 41795039 -108988514 + CT-rich Low_complexity Low_complexity 1 52 0 1702 265 73 14 chr11 41795043 41795662 -108987891 - L1MC4a LINE L1 0 7808 7154 435 310 109 0 chr11 41795779 41795953 -108987600 - MIR SINE MIR -59 203 11 591 308 30 5 chr11 41796112 41796310 -108987243 + MIR SINE MIR 50 252 -10 2185 117 10 3 chr11 41796579 41796887 -108986666 - AluSg SINE Alu 0 310 1 22 0 0 0 chr11 41797258 41797280 -108986273 + AT_rich Low_complexity Low_complexity 1 22 0 900 182 5 24 chr11 41798302 41798680 -108984873 + G-rich Low_complexity Low_complexity 1 370 0 221 305 104 19 chr11 41798886 41799009 -108984544 + MIR SINE MIR 15 139 -69 1794 218 45 19 chr11 41799621 41800196 -108983357 - MER82 DNA MER2_type 0 653 1 611 145 43 17 chr11 41801122 41801239 -108982314 + MLT2B1 LTR ERVL 401 520 0 245 313 50 12 chr11 41801271 41801351 -108982202 + L2 LINE L2 3096 3178 -94 242 193 160 160 chr11 41801550 41801700 -108981853 + MIR SINE MIR 112 261 -1 414 287 32 70 chr11 41801871 41801902 -108981651 + MIR SINE MIR 4 35 -227 2245 98 0 0 chr11 41801902 41802197 -108981356 + AluY SINE Alu 1 295 -16 414 287 32 70 chr11 41802197 41802322 -108981231 + MIR SINE MIR 35 154 -108 410 165 0 0 chr11 41802330 41802409 -108981144 + L1MA10 LINE L1 6254 6332 -2 236 278 69 14 chr11 41802661 41802733 -108980820 + L2 LINE L2 3195 3270 -2 213 269 0 45 chr11 41802849 41802916 -108980637 + L2 LINE L2 3248 3311 -2 * 236 308 150 8 chr11 41802911 41803044 -108980509 - MIR SINE MIR 0 262 111 339 336 53 34 chr11 41803241 41803449 -108980104 + MIR SINE MIR 38 249 -13 488 329 36 60 chr11 41804885 41805255 -108978298 - L2 LINE L2 -172 3141 2772 252 0 0 0 chr11 41805256 41805284 -108978269 + (T)n Simple_repeat Simple_repeat 1 28 0 307 214 18 42 chr11 41805344 41805512 -108978041 + CT-rich Low_complexity Low_complexity 2 165 0 308 135 19 0 chr11 41805794 41805846 -108977707 - MLT1A1 LTR MaLR -312 53 1 23 33 0 0 chr11 41806085 41806115 -108977438 + AT_rich Low_complexity Low_complexity 1 30 0 36 40 0 0 chr11 41807212 41807262 -108976291 + AT_rich Low_complexity Low_complexity 1 50 0 2010 74 0 0 chr11 41807270 41807555 -108975998 + AluY SINE Alu 39 323 0 16691 148 19 94 chr11 41808076 41811836 -108971717 + L1P LINE L1 12 3487 -2659 6808 70 6 1 chr11 41811836 41813231 -108970322 + L1PA8 LINE L1 4754 6165 -7 23 0 0 0 chr11 41813794 41813817 -108969736 + AT_rich Low_complexity Low_complexity 1 23 0 321 299 51 51 chr11 41813884 41814081 -108969472 + L2 LINE L2 2282 2478 -836 669 203 16 0 chr11 41815354 41815482 -108968071 - Tigger7 DNA MER2_type 0 2487 2358 * 3642 179 17 3 chr11 41815477 41816125 -108967428 - Tigger7 DNA MER2_type -1664 823 167 1860 239 42 2 chr11 41816213 41816733 -108966820 + L1M4 LINE L1 4382 4922 -1224 48 72 0 0 chr11 41816790 41816887 -108966666 + AT_rich Low_complexity Low_complexity 1 97 0 1108 196 31 54 chr11 41817061 41817378 -108966175 - L1MB8 LINE L1 -1 6177 5868 2263 65 41 3 chr11 41817450 41817741 -108965812 - AluY SINE Alu -6 305 4 237 275 174 28 chr11 41818816 41818925 -108964628 - MIR SINE MIR -33 229 105 3686 49 11 0 chr11 41819359 41819825 -108963728 + L1PA4 LINE L1 5683 6153 -2 21 57 0 0 chr11 41820155 41820190 -108963363 + AT_rich Low_complexity Low_complexity 1 35 0 255 170 0 0 chr11 41821962 41822009 -108961544 + (TG)n Simple_repeat Simple_repeat 2 48 0 1305 225 165 20 chr11 41822561 41822875 -108960678 - MSTD LTR MaLR 0 396 26 2489 160 40 5 chr11 41822875 41823320 -108960233 - LOR1b LTR ERV1 0 461 1 1305 225 165 20 chr11 41823320 41823351 -108960202 - MSTD LTR MaLR -370 26 1 1907 87 114 0 chr11 41824499 41824763 -108958790 - AluSq SINE Alu -19 294 1 249 210 0 0 chr11 41824993 41825055 -108958498 + GA-rich Low_complexity Low_complexity 1 62 0 263 229 16 0 chr11 41825256 41825317 -108958236 - MER112 DNA MER1_type -195 65 4 316 307 74 45 chr11 41825694 41825938 -108957615 - MIR SINE MIR 0 262 12 345 346 102 38 chr11 41827223 41827489 -108956064 - L1MB8 LINE L1 -2002 5806 5524 1959 226 106 0 chr11 41827729 41828277 -108955276 - L1MD3 LINE L1 -8 7987 7382 696 328 69 55 chr11 41828757 41829409 -108954144 - L1MB8 LINE L1 -1570 4576 3916 2234 107 0 3 chr11 41829466 41829766 -108953787 - AluSg1 SINE Alu -10 299 1 322 348 87 0 chr11 41829779 41829963 -108953590 - L1MB8 LINE L1 -2338 3808 3609 622 218 135 10 chr11 41830338 41830531 -108953022 + MLT1D LTR MaLR 23 239 -266 750 209 128 19 chr11 41830667 41830920 -108952633 - THE1B LTR MaLR -154 210 1 8669 158 7 38 chr11 41830920 41832468 -108951085 - THE1B-int LTR MaLR 0 1580 82 386 152 0 0 chr11 41832469 41832535 -108951018 - MSTA LTR MaLR -21 407 342 5261 132 27 11 chr11 41832543 41833346 -108950207 - THE1-int LTR MaLR -522 1058 243 2720 62 23 44 chr11 41833347 41833431 -108950122 + THE1B-int LTR MaLR 1202 1286 -294 2351 95 0 3 chr11 41833431 41833735 -108949818 + AluY SINE Alu 1 303 -8 2720 62 23 44 chr11 41833735 41834037 -108949516 + THE1B-int LTR MaLR 1286 1580 0 2041 126 75 31 chr11 41834037 41834386 -108949167 + THE1B LTR MaLR 1 364 0 1286 355 64 10 chr11 41834422 41835028 -108948525 - L2 LINE L2 -433 2881 2243 328 260 55 0 chr11 41835125 41835252 -108948301 + MER103 DNA DNA 14 147 -19 1756 129 16 0 chr11 41835900 41836156 -108947397 + AluSp SINE Alu 39 298 -15 2340 91 7 0 chr11 41836553 41836862 -108946691 - AluY SINE Alu 0 311 1 231 377 8 16 chr11 41837223 41837345 -108946208 + MIR SINE MIR 19 139 -123 619 200 0 0 chr11 41837385 41837490 -108946063 + U6 snRNA snRNA 2 106 -1 1310 224 29 40 chr11 41837502 41838043 -108945510 + L1MA9 LINE L1 2702 3399 -4167 * 2238 211 45 52 chr11 41838033 41838440 -108945113 + L1MA9 LINE L1 6800 7202 -529 189 74 0 0 chr11 41838440 41838467 -108945086 + (CA)n Simple_repeat Simple_repeat 2 28 0 2238 211 45 52 chr11 41838467 41838731 -108944822 + L1MA9 LINE L1 7202 7466 -265 2115 142 19 27 chr11 41838739 41839105 -108944448 - THE1B LTR MaLR -1 363 1 3198 118 2 0 chr11 41839105 41839544 -108944009 - THE1B-int LTR MaLR 0 1580 1141 349 268 0 72 chr11 41839729 41839923 -108943630 + A-rich Low_complexity Low_complexity 1 180 0 345 250 0 22 chr11 41840166 41840258 -108943295 + MIR SINE MIR 173 262 0 3363 151 11 8 chr11 41841010 41841618 -108941935 - L1MA6 LINE L1 0 6300 5691 2057 172 44 26 chr11 41841622 41841756 -108941797 + L1M2 LINE L1 5062 5192 -1108 180 0 0 0 chr11 41841756 41841776 -108941777 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2057 172 44 26 chr11 41841776 41842292 -108941261 + L1M2 LINE L1 5192 5721 -579 293 291 107 0 chr11 41842686 41842789 -108940764 - MIR SINE MIR -73 189 76 2302 91 3 0 chr11 41842868 41843166 -108940387 - AluSp SINE Alu -14 299 1 2323 84 7 0 chr11 41843783 41844091 -108939462 + AluY SINE Alu 2 311 0 768 250 20 10 chr11 41844708 41844912 -108938641 + LTR52 LTR ERVL 175 380 -41 288 177 32 16 chr11 41845049 41845111 -108938442 - HERVL74 LTR ERVL -4407 1278 1216 * 557 268 200 17 chr11 41845096 41845331 -108938222 + HERVL74 LTR ERVL 1720 1997 -3688 7384 33 5 0 chr11 41845811 41846977 -108936576 - L1PA3 LINE L1 -7 6148 4975 180 0 0 0 chr11 41847977 41847997 -108935556 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 1930 127 7 0 chr11 41848003 41848278 -108935275 - AluSx SINE Alu -35 277 1 2118 127 0 0 chr11 41849242 41849534 -108934019 + AluSx SINE Alu 3 294 -18 26 0 9 0 chr11 41849534 41849601 -108933952 + AT_rich Low_complexity Low_complexity 1 26 0 2313 196 28 38 chr11 41852047 41852551 -108931002 - MLT1D LTR MaLR 0 505 7 329 282 13 0 chr11 41852653 41852731 -108930822 - MER2 DNA MER2_type 0 345 267 861 224 34 0 chr11 41852759 41852938 -108930615 - MER2 DNA MER2_type -160 185 1 458 312 7 14 chr11 41853162 41853303 -108930250 - MIR SINE MIR -105 157 18 779 327 8 4 chr11 41853972 41854226 -108929327 - MIR SINE MIR 0 262 8 3442 236 93 7 chr11 41854642 41855600 -108927953 + MER45B DNA AcHobo 1 1040 0 195 114 0 0 chr11 41856027 41856062 -108927491 + (TTA)n Simple_repeat Simple_repeat 2 36 0 275 258 161 21 chr11 41856062 41856155 -108927398 - MIR SINE MIR -76 186 81 1046 320 111 70 chr11 41856204 41856881 -108926672 + L2 LINE L2 735 1482 -1832 1796 138 3 24 chr11 41856881 41857179 -108926374 - AluSx SINE Alu -20 292 1 1046 320 111 70 chr11 41857179 41857668 -108925885 + L2 LINE L2 1482 1949 -1365 268 411 8 0 chr11 41857658 41857782 -108925771 + L2 LINE L2 2921 3045 -268 * 737 197 0 0 chr11 41857867 41858019 -108925534 - L1MC3 LINE L1 -8 7777 7626 4336 92 9 2 chr11 41858027 41858710 -108924843 + L1PA10 LINE L1 5182 5868 -300 593 141 20 0 chr11 41858811 41858910 -108924643 + L1PA10 LINE L1 6057 6157 -11 1016 211 137 58 chr11 41858919 41859284 -108924269 - L1MC3 LINE L1 -1628 6157 5800 * 2340 238 88 31 chr11 41859265 41860033 -108923520 - L1MA4A LINE L1 -6 6297 5486 3674 190 45 59 chr11 41860082 41860218 -108923335 - L1MB2 LINE L1 -8 6163 6027 1764 156 13 29 chr11 41860218 41860525 -108923028 + AluSx SINE Alu 2 303 -9 3674 190 45 59 chr11 41860525 41861446 -108922107 - L1MB2 LINE L1 -144 6027 5127 21 71 0 0 chr11 41861449 41861491 -108922062 + AT_rich Low_complexity Low_complexity 1 42 0 24 32 0 0 chr11 41861591 41861622 -108921931 + AT_rich Low_complexity Low_complexity 1 31 0 225 154 0 0 chr11 41862635 41862674 -108920879 + (CATA)n Simple_repeat Simple_repeat 2 40 0 268 381 79 28 chr11 41862770 41862985 -108920568 - MIR SINE MIR -31 231 6 199 186 23 0 chr11 41863077 41863120 -108920433 + L2 LINE L2 3269 3312 -1 1123 223 52 86 chr11 41863776 41864255 -108919298 + MLT1C LTR MaLR 1 463 -4 534 202 0 9 chr11 41865706 41865820 -108917733 - L1MC2 LINE L1 -1 6343 6231 809 201 0 0 chr11 41865859 41866013 -108917540 + FRAM SINE Alu 12 165 -11 722 312 26 21 chr11 41866500 41866830 -108916723 - MLT1G1 LTR MaLR -297 264 1 2233 252 75 68 chr11 41867812 41869088 -108914465 - L1M4c LINE L1 -2081 4301 3013 3342 84 20 0 chr11 41869088 41869530 -108914023 - MLT2A2 LTR ERVL 0 453 3 2233 252 75 68 chr11 41869530 41869608 -108913945 - L1M4c LINE L1 -3369 3013 2937 * 5993 168 6 15 chr11 41869605 41870728 -108912825 + L1PB1 LINE L1 4010 5142 -1009 2097 110 3 28 chr11 41870728 41871047 -108912506 + AluY SINE Alu 1 311 0 5993 168 6 15 chr11 41871047 41871749 -108911804 + L1PB1 LINE L1 5142 5815 -336 2464 77 0 0 chr11 41871749 41872060 -108911493 + AluY SINE Alu 1 311 0 5993 168 6 15 chr11 41872060 41872393 -108911160 + L1PB1 LINE L1 5815 6149 -2 1427 290 63 15 chr11 41872406 41873275 -108910278 - L1M4c LINE L1 -3435 2947 2041 1070 226 22 0 chr11 41873378 41873604 -108909949 + MLT2B3 LTR ERVL 1 231 -323 250 250 17 0 chr11 41873607 41873667 -108909886 + CT-rich Low_complexity Low_complexity 1 61 0 1116 284 4 4 chr11 41873673 41873923 -108909630 + MLT2B3 LTR ERVL 226 475 -79 9700 233 21 23 chr11 41873923 41874354 -108909199 + L1 LINE L1 2158 2588 -3558 1623 183 9 40 chr11 41874354 41874676 -108908877 - AluJb SINE Alu 0 312 1 9700 233 21 23 chr11 41874676 41876952 -108906601 + L1 LINE L1 2588 4859 -1287 2020 121 7 0 chr11 41877266 41877555 -108905998 + AluSq SINE Alu 1 291 -22 284 342 80 20 chr11 41877896 41878349 -108905204 + L1MEc LINE L1 1275 1754 -4642 21 0 0 0 chr11 41878446 41878467 -108905086 + AT_rich Low_complexity Low_complexity 1 21 0 3207 274 31 7 chr11 41878614 41879834 -108903719 + L1MEc LINE L1 2665 3913 -2302 1917 231 101 18 chr11 41879840 41880385 -108903168 + L1MC3 LINE L1 7097 7686 -99 968 218 34 27 chr11 41880386 41880680 -108902873 - L1M3 LINE L1 -912 5234 4939 * 2274 170 9 24 chr11 41880674 41881144 -108902409 + L1M3 LINE L1 5227 5689 -479 581 311 63 36 chr11 41881183 41881595 -108901958 + L1ME3A LINE L1 3080 3502 -2644 815 261 53 76 chr11 41881623 41881676 -108901877 + L1ME3A LINE L1 5424 5477 -685 2216 97 0 10 chr11 41881676 41881985 -108901568 + AluY SINE Alu 1 306 -5 815 261 53 76 chr11 41881985 41882457 -108901096 + L1ME3A LINE L1 5477 5937 -225 317 337 83 18 chr11 41882556 41882725 -108900828 + L1ME3A LINE L1 5989 6168 -2 2125 99 0 0 chr11 41882889 41883215 -108900338 - AluSx SINE Alu 0 326 1 389 274 94 60 chr11 41883660 41883894 -108899659 - MIR SINE MIR 0 262 21 235 340 19 47 chr11 41884702 41884808 -108898745 + L2 LINE L2 3137 3239 -33 252 0 0 0 chr11 41884816 41884844 -108898709 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 2059 113 0 0 chr11 41885225 41885530 -108898023 - AluY SINE Alu 0 305 1 297 0 0 0 chr11 41886032 41886065 -108897488 + (TG)n Simple_repeat Simple_repeat 1 33 0 41 0 0 0 chr11 41886068 41886109 -108897444 + AT_rich Low_complexity Low_complexity 1 41 0 297 0 0 0 chr11 41886718 41886751 -108896802 + (TG)n Simple_repeat Simple_repeat 2 34 0 23 0 0 0 chr11 41887290 41887313 -108896240 + AT_rich Low_complexity Low_complexity 1 23 0 785 148 13 0 chr11 41887579 41887734 -108895819 + CT-rich Low_complexity Low_complexity 4 160 0 313 22 43 0 chr11 41887736 41887782 -108895771 + (GA)n Simple_repeat Simple_repeat 1 48 0 1070 47 0 0 chr11 41887782 41887910 -108895643 - AluY SINE Alu -183 128 1 21 57 0 0 chr11 41888384 41888419 -108895134 + AT_rich Low_complexity Low_complexity 1 35 0 215 262 84 28 chr11 41888442 41888549 -108895004 - MIR SINE MIR -99 163 51 318 271 96 43 chr11 41888762 41888950 -108894603 + L2 LINE L2 3115 3312 -1 1188 210 101 14 chr11 41888966 41889252 -108894301 + MLT1A2 LTR MaLR 14 324 -50 796 91 51 23 chr11 41889293 41889468 -108894085 + GA-rich Low_complexity Low_complexity 1 180 0 227 86 29 0 chr11 41889470 41889505 -108894048 + (GGGA)n Simple_repeat Simple_repeat 1 36 0 305 305 99 73 chr11 41889556 41889900 -108893653 + L1ME4a LINE L1 5467 5819 -302 22 56 0 0 chr11 41890087 41890123 -108893430 + AT_rich Low_complexity Low_complexity 1 36 0 456 290 97 0 chr11 41891003 41891220 -108892333 + MER44D DNA MER2_type 1 508 -101 1326 157 121 49 chr11 41891454 41891760 -108891793 - L1MA5A LINE L1 -5 6292 5965 610 184 0 0 chr11 41891762 41891860 -108891693 + MER44D DNA MER2_type 508 605 0 301 167 60 12 chr11 41891936 41892020 -108891533 + L1ME4a LINE L1 5991 6078 -43 198 0 0 0 chr11 41893459 41893481 -108890072 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 23 0 0 0 chr11 41894706 41894729 -108888824 + AT_rich Low_complexity Low_complexity 1 23 0 216 111 0 0 chr11 41894809 41894845 -108888708 + (CA)n Simple_repeat Simple_repeat 1 36 0 220 240 21 31 chr11 41895338 41895434 -108888119 + T-rich Low_complexity Low_complexity 1 95 0 1812 166 135 5 chr11 41895846 41896225 -108887328 - MSTA LTR MaLR 0 428 1 1455 206 52 0 chr11 41896352 41896638 -108886915 + MLT1C LTR MaLR 7 307 -160 744 255 16 5 chr11 41896969 41897153 -108886400 - MLT1D LTR MaLR -2 503 318 35 24 0 0 chr11 41897167 41897209 -108886344 + AT_rich Low_complexity Low_complexity 1 42 0 2414 194 11 19 chr11 41897268 41897805 -108885748 - L1MA4 LINE L1 -14 6286 5754 652 245 29 90 chr11 41897808 41898002 -108885551 - MLT1D LTR MaLR -170 297 117 1809 163 48 0 chr11 41898002 41898291 -108885262 + AluSx SINE Alu 1 303 -9 652 245 29 90 chr11 41898291 41898398 -108885155 - MLT1D LTR MaLR -350 117 5 308 152 29 48 chr11 41898407 41898512 -108885041 + (CATATA)n Simple_repeat Simple_repeat 3 105 0 339 267 76 12 chr11 41898518 41898690 -108884863 + L1ME4a LINE L1 5936 6118 -3 2199 60 20 40 chr11 41898692 41899012 -108884541 + AluY SINE Alu 1 292 -19 22 0 0 0 chr11 41899451 41899473 -108884080 + AT_rich Low_complexity Low_complexity 1 22 0 2172 213 14 27 chr11 41900970 41901487 -108882066 - MER67D LTR ERV1 0 514 5 2311 88 3 7 chr11 41901713 41902019 -108881534 - AluSc SINE Alu -4 305 1 1180 123 20 113 chr11 41902217 41902493 -108881060 - pTR5 LTR ERV1 -2039 399 17 5069 118 129 128 chr11 41902593 41903998 -108879555 + pTR5 LTR ERV1 1032 2438 0 3003 121 14 6 chr11 41904007 41904505 -108879048 + L1P LINE L1 2500 3001 -3145 2116 136 3 0 chr11 41904562 41904863 -108878690 - AluSx SINE Alu -10 302 1 22 80 0 0 chr11 41905674 41905724 -108877829 + AT_rich Low_complexity Low_complexity 1 50 0 2545 60 0 0 chr11 41905804 41906106 -108877447 + AluY SINE Alu 1 302 -9 342 231 0 0 chr11 41906112 41906203 -108877350 + (TATATG)n Simple_repeat Simple_repeat 3 93 0 1571 199 13 10 chr11 41906348 41906649 -108876904 - AluJo SINE Alu -10 302 1 303 369 38 6 chr11 41906822 41906979 -108876574 + MIR SINE MIR 1 162 -100 287 316 129 7 chr11 41906975 41907130 -108876423 + MIR SINE MIR 70 243 -19 * 1596 178 32 11 chr11 41907131 41907412 -108876141 - AluJb SINE Alu -20 292 6 1502 151 70 91 chr11 41907823 41908206 -108875347 - THE1C LTR MaLR 0 375 1 2106 123 3 0 chr11 41909795 41910088 -108873465 + AluSg SINE Alu 1 294 -16 24 53 0 0 chr11 41910288 41910326 -108873227 + AT_rich Low_complexity Low_complexity 1 38 0 217 232 126 105 chr11 41910541 41910636 -108872917 + MIR3 SINE MIR 10 106 -102 1274 135 54 162 chr11 41910983 41911201 -108872352 - AluJb SINE Alu -4 298 127 423 119 0 0 chr11 41911201 41911268 -108872285 + (TG)n Simple_repeat Simple_repeat 2 68 0 1274 135 54 162 chr11 41911268 41911382 -108872171 - AluJb SINE Alu -175 127 2 1499 206 27 20 chr11 41911692 41911984 -108871569 + AluJo SINE Alu 1 294 -18 373 231 62 98 chr11 41912018 41912243 -108871310 + MLT1J LTR MaLR 244 460 -51 212 332 71 36 chr11 41912556 41912752 -108870801 + MIR SINE MIR 47 249 -13 185 150 0 50 chr11 41912809 41912849 -108870704 + MIR SINE MIR 112 149 -113 2802 176 59 20 chr11 41912858 41913505 -108870048 - L1MB1 LINE L1 -9 6180 5509 1311 221 120 2 chr11 41913479 41913896 -108869657 - L1MB1 LINE L1 -1175 4971 4506 * 1113 146 31 26 chr11 41913896 41914122 -108869431 + MER50 LTR ERV1 1 227 -507 1385 189 8 4 chr11 41914126 41914391 -108869162 + MER50 LTR ERV1 432 697 -37 3011 229 98 36 chr11 41914412 41915492 -108868061 - L1MB1 LINE L1 -1637 4509 3363 4090 202 21 20 chr11 41915594 41916599 -108866954 + L1 LINE L1 3381 4386 -1760 3385 128 82 0 chr11 41916610 41917197 -108866356 + L1MA3 LINE L1 5664 6298 -7 2070 115 7 0 chr11 41917235 41917534 -108866019 + AluSg SINE Alu 1 301 0 2393 64 3 3 chr11 41917820 41918115 -108865438 - AluY SINE Alu -16 295 1 544 210 17 0 chr11 41918116 41918235 -108865318 + Tigger7 DNA MER2_type 2360 2480 -7 22 0 0 0 chr11 41918268 41918290 -108865263 + AT_rich Low_complexity Low_complexity 1 22 0 1724 133 0 33 chr11 41918297 41918567 -108864986 + AluSx SINE Alu 1 261 -51 1561 233 32 2 chr11 41918658 41919070 -108864483 - L1PB4 LINE L1 -3 6153 5730 418 292 54 39 chr11 41919557 41919817 -108863736 + MLT1H1 LTR MaLR 1 264 -291 2381 91 3 0 chr11 41919928 41920235 -108863318 - AluY SINE Alu -3 308 1 349 241 46 0 chr11 41920287 41920395 -108863158 + MLT1H1 LTR MaLR 436 548 -7 21 0 0 0 chr11 41920482 41920503 -108863050 + AT_rich Low_complexity Low_complexity 1 21 0 2512 60 0 0 chr11 41920790 41921090 -108862463 + AluY SINE Alu 1 300 -11 1032 189 17 0 chr11 41921141 41921321 -108862232 + AluJo SINE Alu 1 183 -129 23 33 0 0 chr11 41924429 41924459 -108859094 + AT_rich Low_complexity Low_complexity 1 30 0 6580 73 14 7 chr11 41925264 41926749 -108856804 - L1PA7 LINE L1 -2 6152 4661 200 33 0 33 chr11 41926768 41926798 -108856755 + (TTTTTA)n Simple_repeat Simple_repeat 2 30 0 1858 56 0 0 chr11 41926801 41927034 -108856519 - L1PA5 LINE L1 -3 6151 5919 1438 34 0 0 chr11 41927035 41927213 -108856340 + L1PA5 LINE L1 5717 5894 -260 * 10073 108 1 18 chr11 41927210 41928205 -108855348 - L1PA7 LINE L1 -1470 4676 3717 2340 95 0 22 chr11 41928205 41928521 -108855032 - AluY SINE Alu 0 311 3 10073 108 1 18 chr11 41928521 41929144 -108854409 - L1PA7 LINE L1 -2429 3717 3085 2414 90 0 6 chr11 41929390 41929701 -108853852 - AluY SINE Alu -2 309 1 209 176 0 0 chr11 41929895 41929929 -108853624 + (ATG)n Simple_repeat Simple_repeat 3 36 0 1070 157 30 0 chr11 41930037 41930234 -108853319 + MLT2B1 LTR ERVL 1 203 -317 249 196 0 0 chr11 41930291 41930337 -108853216 + MLT2B1 LTR ERVL 475 520 0 25 65 0 0 chr11 41930468 41930514 -108853039 + AT_rich Low_complexity Low_complexity 1 46 0 508 314 11 17 chr11 41930592 41930767 -108852786 + MLT1J1 LTR MaLR 37 210 -236 25 31 0 0 chr11 41931099 41931131 -108852422 + AT_rich Low_complexity Low_complexity 1 32 0 1337 205 55 0 chr11 41931951 41932205 -108851348 + AluJo SINE Alu 13 280 -32 189 200 0 50 chr11 41932207 41932287 -108851266 + GA-rich Low_complexity Low_complexity 4 79 0 185 351 5 76 chr11 41933367 41933578 -108849975 + L2 LINE L2 2813 3008 -264 208 240 0 0 chr11 41933997 41934047 -108849506 + T-rich Low_complexity Low_complexity 3 52 0 2520 62 3 0 chr11 41934137 41934445 -108849108 + AluY SINE Alu 1 309 -2 352 184 15 140 chr11 41934601 41934737 -108848816 + LTR12 LTR ERV1 239 357 -357 575 288 15 22 chr11 41935153 41935355 -108848198 + LTR40a LTR ERVL 84 227 -235 292 132 57 0 chr11 41935361 41935414 -108848139 + LTR40b LTR ERVL 372 427 -35 1087 116 23 0 chr11 41935883 41936056 -108847497 + LOR1a-int LTR ERV1 5888 6064 -2056 543 136 0 0 chr11 41936055 41936136 -108847417 + LOR1a-int LTR ERV1 8030 8110 -10 * 2465 88 0 0 chr11 41936184 41936492 -108847061 - AluY SINE Alu -3 308 1 1702 205 11 55 chr11 41936510 41936758 -108846795 + LOR1a LTR ERV1 60 280 -217 1881 154 0 10 chr11 41936758 41937050 -108846503 - AluSx SINE Alu -2 310 22 1702 205 11 55 chr11 41937050 41937259 -108846294 + LOR1a LTR ERV1 280 497 0 244 313 0 0 chr11 41937728 41937792 -108845761 + L2 LINE L2 3209 3272 0 239 218 0 36 chr11 41938806 41938862 -108844691 - MIR SINE MIR -62 146 98 10597 151 18 2 chr11 41939996 41941744 -108841809 - HERVL18 LTR ERVL -2268 3779 2004 453 370 76 23 chr11 41941790 41942024 -108841529 - L1M3c LINE L1 -5716 425 160 2390 82 7 0 chr11 41942024 41942327 -108841226 - AluY SINE Alu -6 305 1 453 370 76 23 chr11 41942327 41942489 -108841064 - L1M3c LINE L1 -5981 160 8 215 30 0 30 chr11 41942767 41942800 -108840753 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 264 383 8 0 chr11 41942992 41943112 -108840441 + L2 LINE L2 3186 3306 -7 728 305 12 9 chr11 41944362 41944609 -108838944 + MIR SINE MIR 17 262 0 21 82 0 0 chr11 41944627 41944676 -108838877 + AT_rich Low_complexity Low_complexity 1 49 0 1050 250 110 5 chr11 41944925 41945323 -108838230 + MLT1E1 LTR MaLR 3 529 -125 2219 76 21 0 chr11 41945323 41945634 -108837919 + AluSc SINE Alu 1 309 0 1050 250 110 5 chr11 41945634 41945747 -108837806 + MLT1E1 LTR MaLR 529 629 -25 2548 64 0 3 chr11 41945747 41946059 -108837494 + AluY SINE Alu 1 311 0 306 0 0 0 chr11 41946248 41946282 -108837271 + (TA)n Simple_repeat Simple_repeat 2 35 0 2140 113 3 3 chr11 41946356 41946665 -108836888 + AluSc SINE Alu 1 309 0 1888 103 0 70 chr11 41947499 41947800 -108835753 + AluSg SINE Alu 31 310 0 2281 86 6 16 chr11 41948203 41948517 -108835036 + AluY SINE Alu 1 311 0 2072 126 0 3 chr11 41948612 41948949 -108834604 - AluSq SINE Alu 0 336 1 836 235 15 66 chr11 41948950 41949222 -108834331 - L1MD2 LINE L1 -29 6330 6073 2348 256 43 6 chr11 41949238 41950165 -108833388 - L1MD2 LINE L1 -352 6007 5047 1437 257 52 28 chr11 41950163 41950696 -108832857 + L1M4 LINE L1 3985 4530 -1616 * 1832 100 0 8 chr11 41950696 41950937 -108832616 - AluSc SINE Alu -68 241 3 1118 264 50 9 chr11 41950941 41951384 -108832169 + L1M4 LINE L1 4582 5042 -1104 819 263 60 27 chr11 41951872 41952173 -108831380 + MLT1E LTR MaLR 283 593 0 1619 100 168 0 chr11 41952486 41952618 -108830935 - AluSg1 SINE Alu -17 292 184 309 26 0 0 chr11 41952618 41952656 -108830897 + (TTA)n Simple_repeat Simple_repeat 1 38 0 1619 100 168 0 chr11 41952656 41952773 -108830780 - AluSg1 SINE Alu -125 184 1 1450 191 123 11 chr11 41954086 41954437 -108829116 - MLT1B LTR MaLR 0 390 1 267 54 0 0 chr11 41954951 41954988 -108828565 + (TCTA)n Simple_repeat Simple_repeat 4 40 0 315 277 54 9 chr11 41955004 41955116 -108828437 - L1MB8 LINE L1 -5 6173 6057 6310 252 67 13 chr11 41955124 41957673 -108825880 - L1MB8 LINE L1 -311 5873 3130 2065 113 3 11 chr11 41957673 41957995 -108825558 + AluY SINE Alu 1 320 0 6310 252 67 13 chr11 41957995 41958456 -108825097 - L1MB8 LINE L1 -3054 3130 2695 421 277 0 0 chr11 41958460 41958579 -108824974 - L1MB8 LINE L1 -3559 2587 2469 5196 169 46 6 chr11 41958590 41959612 -108823941 - L1MC1 LINE L1 0 6333 5271 4185 168 46 26 chr11 41959730 41959918 -108823635 - L1 LINE L1 -3323 4242 4059 2269 92 3 3 chr11 41959918 41960210 -108823343 + AluY SINE Alu 1 292 -19 4185 168 46 26 chr11 41960210 41960548 -108823005 - L1 LINE L1 -3506 4059 3729 2361 91 0 7 chr11 41960548 41960856 -108822697 - AluY SINE Alu -5 306 1 4185 168 46 26 chr11 41960856 41961720 -108821833 - L1 LINE L1 -3836 3729 2826 42 20 0 0 chr11 41961812 41961861 -108821692 + AT_rich Low_complexity Low_complexity 1 49 0 180 0 0 0 chr11 41961882 41961902 -108821651 + (TAAAA)n Simple_repeat Simple_repeat 4 23 0 182 319 97 69 chr11 41963185 41963329 -108820224 - L2 LINE L2 -1150 2164 2017 274 316 20 0 chr11 41963339 41963437 -108820116 - LTR67 LTR ERVL -10 547 448 194 361 92 66 chr11 41963652 41963929 -108819624 - L2 LINE L2 -1391 1923 1655 2650 10 3 3 chr11 41963929 41964225 -108819328 + AluYa5 SINE Alu 1 296 -15 194 361 92 66 chr11 41964225 41964279 -108819274 - L2 LINE L2 -1659 1655 1604 1949 147 3 0 chr11 41964279 41964572 -108818981 + AluSx SINE Alu 7 300 -12 194 361 92 66 chr11 41964572 41964594 -108818959 - L2 LINE L2 -1710 1604 1584 2428 68 0 13 chr11 41964594 41964901 -108818652 + AluY SINE Alu 1 303 -8 194 361 92 66 chr11 41964901 41964994 -108818559 - L2 LINE L2 -1730 1584 1495 1917 161 122 8 chr11 41964994 41965378 -108818175 - MSTA LTR MaLR 0 428 1 194 361 92 66 chr11 41965378 41965643 -108817910 - L2 LINE L2 -1819 1495 1190 216 343 72 84 chr11 41965647 41966015 -108817538 - L2 LINE L2 -2260 1054 683 1815 193 50 21 chr11 41966015 41966435 -108817118 + MSTB1 LTR MaLR 1 432 0 216 343 72 84 chr11 41966435 41966903 -108816650 - L2 LINE L2 -2631 683 228 533 351 4 13 chr11 41967084 41967323 -108816230 - LTR16B LTR ERVL -25 439 203 224 373 107 41 chr11 41967710 41968104 -108815449 + L3 LINE CR1 459 878 -699 191 296 8 96 chr11 41968106 41968231 -108815322 + L3 LINE CR1 1042 1155 -422 275 330 21 0 chr11 41968318 41968415 -108815138 + L2 LINE L2 2877 2975 -338 1054 261 68 9 chr11 41968483 41968809 -108814744 - MER87 LTR ERV1 0 541 197 2317 116 52 0 chr11 41969656 41970002 -108813551 + THE1B LTR MaLR 1 364 0 9822 131 19 40 chr11 41970002 41971318 -108812235 + THE1B-int LTR MaLR 1 1278 -302 2171 107 0 26 chr11 41971318 41971627 -108811926 + AluY SINE Alu 1 301 -10 9822 131 19 40 chr11 41971627 41971918 -108811635 + THE1B-int LTR MaLR 1278 1574 -6 2146 140 37 3 chr11 41971923 41972273 -108811280 + THE1B LTR MaLR 1 362 -2 3564 176 41 59 chr11 41972312 41972986 -108810567 - MER49 LTR ERV1 -163 760 100 1827 181 0 10 chr11 41972986 41973300 -108810253 - AluSx SINE Alu 0 312 2 3564 176 41 59 chr11 41973300 41973399 -108810154 - MER49 LTR ERV1 -823 100 1 1160 195 142 32 chr11 41973399 41973681 -108809872 - MER49-int LTR ERV1 -1 7093 6445 932 208 35 30 chr11 41973682 41973879 -108809674 - MER49-int LTR ERV1 -622 6136 5939 477 206 37 47 chr11 41973879 41974051 -108809502 - MER87-int LTR ERV1 -1307 4891 3635 904 144 5 96 chr11 41974177 41974364 -108809189 - MER87-int LTR ERV1 -4165 3955 3786 5476 196 52 67 chr11 41974482 41975659 -108807894 - MER87-int LTR ERV1 -2148 4183 2990 2550 68 0 0 chr11 41975659 41975970 -108807583 - AluY SINE Alu 0 311 1 5476 196 52 67 chr11 41975970 41977115 -108806438 - MER87-int LTR ERV1 -3341 2990 686 5350 168 59 42 chr11 41976201 41977466 -108806087 - LTR57-int LTR ERVL -3754 1589 303 * 642 242 21 31 chr11 41977630 41977824 -108805729 - MER87-int LTR ERV1 -1408 378 187 1203 270 72 31 chr11 41977982 41978426 -108805127 - MER87 LTR ERV1 0 541 80 197 368 0 0 chr11 41978612 41978688 -108804865 + L2 LINE L2 2886 2961 -353 237 321 0 24 chr11 41978812 41978896 -108804657 + L2 LINE L2 3189 3270 -2 280 261 0 0 chr11 41979214 41979283 -108804270 + HsTC2 DNA Tc2 31 99 -1799 544 286 68 23 chr11 41979460 41979813 -108803740 + HsTC2 DNA Tc2 1529 1897 -1 727 271 99 52 chr11 41979936 41980382 -108803171 + MLT1C LTR MaLR 1 467 0 1105 233 105 7 chr11 41980412 41980717 -108802836 - MLT1C LTR MaLR -132 335 1 1711 196 19 35 chr11 41982490 41982857 -108800696 + MLT1A1 LTR MaLR 1 361 -4 255 346 85 0 chr11 41982883 41983013 -108800540 + L3 LINE CR1 1282 1422 -155 2160 120 3 0 chr11 41983180 41983480 -108800073 + AluSq SINE Alu 3 303 -10 393 241 73 84 chr11 41983632 41983893 -108799660 + MLT1K LTR MaLR 315 572 -16 22 35 0 0 chr11 41984424 41984453 -108799100 + AT_rich Low_complexity Low_complexity 1 29 0 39 0 0 0 chr11 41984552 41984591 -108798962 + AT_rich Low_complexity Low_complexity 1 39 0 1832 124 40 30 chr11 41984592 41984804 -108798749 + AluY SINE Alu 1 218 -93 5042 73 64 116 chr11 41984804 41985675 -108797878 - LTR12 LTR ERV1 0 826 1 1832 124 40 30 chr11 41985675 41985761 -108797792 + AluY SINE Alu 218 302 -9 280 338 83 0 chr11 41985794 41985939 -108797614 + MIR SINE MIR 91 247 -15 23 0 0 0 chr11 41986047 41986070 -108797483 + AT_rich Low_complexity Low_complexity 1 23 0 233 318 8 83 chr11 41986144 41986276 -108797277 - MIR SINE MIR -71 137 16 1406 195 49 42 chr11 41986632 41986919 -108796634 - AluJb SINE Alu -23 289 1 781 262 8 4 chr11 41988664 41988927 -108794626 - L1M4 LINE L1 -940 6017 5754 268 243 9 37 chr11 41988928 41989035 -108794518 - L1M4 LINE L1 -4766 2193 2090 1104 274 60 33 chr11 41989048 41989416 -108794137 - L1M4 LINE L1 -6372 487 110 257 208 13 0 chr11 41989454 41989531 -108794022 + (TA)n Simple_repeat Simple_repeat 1 78 0 258 192 0 0 chr11 41989605 41989657 -108793896 + (TA)n Simple_repeat Simple_repeat 2 53 0 1360 234 103 37 chr11 41989802 41990365 -108793188 - LTR48B LTR ERV1 -44 600 1 23 33 0 0 chr11 41990434 41990464 -108793089 + AT_rich Low_complexity Low_complexity 1 30 0 1773 87 19 41 chr11 41990912 41991178 -108792375 + AluSq SINE Alu 1 260 -53 1539 275 56 8 chr11 41991282 41991872 -108791681 - L1 LINE L1 -2978 3168 2551 2049 168 56 3 chr11 41991873 41992212 -108791341 - LTR18A LTR ERVL 0 357 1 12740 166 15 1 chr11 41992213 41994244 -108789309 - HERVL18 LTR ERVL 0 6047 3987 2028 130 3 0 chr11 41994842 41995155 -108788398 - AluSx SINE Alu 0 314 1 667 166 60 26 chr11 41995162 41995313 -108788240 - LTR54B LTR ERV1 -342 156 1 24 0 0 0 chr11 41997191 41997215 -108786338 + AT_rich Low_complexity Low_complexity 1 24 0 204 188 94 8 chr11 41997671 41997788 -108785765 + (CACAA)n Simple_repeat Simple_repeat 1 127 0 206 118 0 0 chr11 41998578 41998612 -108784941 + (T)n Simple_repeat Simple_repeat 1 34 0 21 57 0 0 chr11 41999404 41999439 -108784114 + AT_rich Low_complexity Low_complexity 1 35 0 366 80 0 0 chr11 41999925 41999975 -108783578 + (CA)n Simple_repeat Simple_repeat 1 50 0 1745 141 131 39 chr11 42001761 42002150 -108781403 - MSTA LTR MaLR -3 425 1 26 0 0 0 chr11 42002232 42002258 -108781295 + AT_rich Low_complexity Low_complexity 1 26 0 1860 160 58 50 chr11 42002582 42002982 -108780571 + MER57A LTR ERV1 1 403 0 26 30 0 0 chr11 42003852 42003885 -108779668 + AT_rich Low_complexity Low_complexity 1 33 0 7082 46 7 0 chr11 42003917 42005225 -108778328 - L1PA5 LINE L1 -8 6146 4841 9404 42 1 0 chr11 42005226 42006379 -108777174 + L1PA5 LINE L1 3704 4857 -1289 1250 97 0 0 chr11 42006379 42006544 -108777009 - AluSg/x SINE Alu -11 301 137 1699 123 0 54 chr11 42007274 42007550 -108776003 - AluY SINE Alu -20 291 31 4758 110 249 71 chr11 42007553 42008881 -108774672 - pTR5 LTR ERV1 0 2438 743 1918 124 22 0 chr11 42009135 42009451 -108774102 - AluSc SINE Alu 0 322 1 308 269 39 9 chr11 42010087 42010197 -108773356 + MIR SINE MIR 48 161 -71 1925 152 0 19 chr11 42010482 42010798 -108772755 - AluSx SINE Alu -2 310 1 823 254 91 13 chr11 42010896 42011203 -108772350 + Zaphod DNA AcHobo 404 734 -3297 1864 223 148 20 chr11 42011223 42011927 -108771626 + Zaphod DNA AcHobo 2409 3202 -829 3532 182 48 25 chr11 42011984 42012777 -108770776 - L1MB3 LINE L1 -4 6179 5369 336 197 0 28 chr11 42013295 42013366 -108770187 - LTR28 LTR ERV1 -4 1016 948 663 226 33 60 chr11 42013503 42013790 -108769763 - LTR1 LTR ERV1 -558 227 1 2665 193 10 2 chr11 42014853 42015346 -108768207 - LOR1a LTR ERV1 0 497 1 2071 108 0 41 chr11 42015553 42015848 -108767705 + AluSg SINE Alu 6 288 -22 417 228 89 51 chr11 42015959 42016117 -108767436 - LTR40c LTR ERVL -107 358 195 228 266 143 98 chr11 42016574 42016777 -108766776 - MIR SINE MIR -16 246 35 186 167 0 0 chr11 42017891 42017927 -108765626 + A-rich Low_complexity Low_complexity 5 40 0 342 254 40 40 chr11 42018017 42018143 -108765410 - MIR SINE MIR 0 262 137 804 114 23 0 chr11 42018177 42018308 -108765245 - L1MA5A LINE L1 -4 6293 6160 2407 210 35 8 chr11 42018745 42019255 -108764298 - MER34 LTR ERV1 -18 524 1 204 40 0 0 chr11 42019677 42019702 -108763851 + (TAGA)n Simple_repeat Simple_repeat 1 25 0 1503 199 7 7 chr11 42019756 42020043 -108763510 - AluJo SINE Alu -23 289 3 347 241 138 40 chr11 42020434 42020603 -108762950 - MER33 DNA MER1_type -2265 320 116 2330 85 0 3 chr11 42020603 42020908 -108762645 - AluY SINE Alu -7 304 1 347 241 138 40 chr11 42020908 42020991 -108762562 - MER33 DNA MER1_type -2469 116 43 5782 94 21 13 chr11 42021161 42021815 -108761738 - L1PA13 LINE L1 -3 6160 5513 345 24 0 0 chr11 42021815 42021857 -108761696 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 2353 60 0 11 chr11 42021857 42022142 -108761411 - AluY SINE Alu -29 282 1 5782 94 21 13 chr11 42022142 42022154 -108761399 - L1PA13 LINE L1 -650 5513 5503 2372 100 0 0 chr11 42022154 42022453 -108761100 - AluY SINE Alu -10 301 3 5782 94 21 13 chr11 42022453 42023574 -108759979 - L1PA13 LINE L1 -660 5503 4352 198 0 0 0 chr11 42023582 42023604 -108759949 + (TTA)n Simple_repeat Simple_repeat 3 24 0 34448 40 4 2 chr11 42023604 42028647 -108754906 - L1PA4 LINE L1 -18 6137 1085 1512 149 0 4 chr11 42028645 42028893 -108754660 - L1PA13 LINE L1 -1813 4333 4087 * 7714 79 3 2 chr11 42128894 42129931 -108653622 + L1P LINE L1 3281 4318 -1828 195 244 0 22 chr11 42130386 42130431 -108653122 - MIR SINE MIR -8 254 211 * 204 286 0 0 chr11 42130400 42130442 -108653111 - L2 LINE L2 -27 3286 3245 35 54 0 0 chr11 42130544 42130600 -108652953 + AT_rich Low_complexity Low_complexity 1 56 0 188 338 54 14 chr11 42130737 42130811 -108652742 - L2 LINE L2 -40 3232 3156 347 259 56 9 chr11 42131021 42131129 -108652424 - MIR SINE MIR 0 262 150 1146 67 0 0 chr11 42131261 42131396 -108652157 - AluY SINE Alu -176 135 1 308 227 45 4 chr11 42131661 42131776 -108651777 + MIR SINE MIR 99 256 -6 186 313 62 0 chr11 42131967 42132031 -108651522 - L2 LINE L2 -12 3301 3234 228 343 55 0 chr11 42132198 42132271 -108651282 + L2 LINE L2 3196 3272 0 2419 198 54 9 chr11 42132494 42132525 -108651028 - L1MA8 LINE L1 -209 6082 6054 1860 173 0 3 chr11 42132525 42132825 -108650728 - AluSx SINE Alu -13 299 1 2419 198 54 9 chr11 42132825 42133333 -108650220 - L1MA8 LINE L1 -237 6054 5519 1825 137 0 0 chr11 42133335 42133598 -108649955 - AluSg SINE Alu -9 301 39 412 377 108 34 chr11 42134426 42134805 -108648748 + L2 LINE L2 2839 3245 -27 2366 76 0 3 chr11 42135378 42135682 -108647871 + AluY SINE Alu 1 303 -8 24 0 0 0 chr11 42136040 42136064 -108647489 + AT_rich Low_complexity Low_complexity 1 24 0 2429 82 0 3 chr11 42137041 42137347 -108646206 + AluY SINE Alu 5 309 -2 613 312 5 11 chr11 42137416 42137602 -108645951 - MLT2E LTR ERVL 0 628 444 217 344 8 55 chr11 42137833 42137961 -108645592 - L2 LINE L2 -1 3271 3150 387 0 0 0 chr11 42139334 42139377 -108644176 + (CA)n Simple_repeat Simple_repeat 2 44 0 314 280 178 13 chr11 42139565 42139722 -108643831 - HAL1b LINE L1 -13 1335 1153 447 288 39 31 chr11 42139724 42140197 -108643356 - HAL1b LINE L1 -228 1120 548 2571 256 110 36 chr11 42140206 42141247 -108642306 + LTR28 LTR ERV1 1 1755 0 2721 195 28 4 chr11 42141296 42141804 -108641749 + MLT2B1 LTR ERVL 1 520 0 2369 108 0 0 chr11 42141977 42142283 -108641270 - AluSx SINE Alu -4 308 3 2183 106 0 7 chr11 42142300 42142603 -108640950 - AluY SINE Alu -10 301 1 5043 146 29 22 chr11 42144010 42144907 -108638646 + MER4D LTR ERV1 1 903 0 191 274 0 20 chr11 42144907 42144952 -108638601 - L2 LINE L2 -8 3264 3221 526 313 79 29 chr11 42145415 42145655 -108637898 - MIR SINE MIR -3 259 8 214 355 26 52 chr11 42146489 42146644 -108636909 - MIR SINE MIR -106 156 6 1419 193 40 20 chr11 42146649 42146949 -108636604 - AluJo SINE Alu -6 306 1 897 258 35 5 chr11 42147020 42147218 -108636335 + MLT2B3 LTR ERVL 313 516 -38 270 117 39 52 chr11 42147218 42147295 -108636258 + (TCTA)n Simple_repeat Simple_repeat 2 77 0 323 145 0 43 chr11 42147297 42147366 -108636187 + MLT2B1 LTR ERVL 455 520 0 * 1293 261 73 34 chr11 42147366 42147790 -108635763 + MLT1F LTR MaLR 102 542 0 180 0 0 0 chr11 42148020 42148040 -108635513 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 25 0 0 0 chr11 42148422 42148447 -108635106 + AT_rich Low_complexity Low_complexity 1 25 0 1204 280 133 64 chr11 42148452 42148895 -108634658 + MLT1G1 LTR MaLR 1 436 -106 21 0 0 0 chr11 42149075 42149096 -108634457 + AT_rich Low_complexity Low_complexity 1 21 0 242 136 23 0 chr11 42149212 42149256 -108634297 + MLT1G1 LTR MaLR 546 590 0 192 361 28 0 chr11 42149359 42149431 -108634122 + MIR SINE MIR 39 112 -150 557 28 14 0 chr11 42149531 42149602 -108633951 + (TAGA)n Simple_repeat Simple_repeat 3 74 0 260 195 12 37 chr11 42149604 42149686 -108633867 + Charlie8 DNA MER1_type 76 155 -2262 22 0 0 0 chr11 42149856 42149878 -108633675 + AT_rich Low_complexity Low_complexity 1 22 0 208 121 0 0 chr11 42149923 42149956 -108633597 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 566 250 117 32 chr11 42150181 42150369 -108633184 + MER3 DNA MER1_type 5 208 -1 293 354 97 7 chr11 42150609 42150753 -108632800 - MIR3 SINE MIR -16 192 36 315 355 60 30 chr11 42151650 42151816 -108631737 + L2 LINE L2 3096 3266 -6 29 90 0 0 chr11 42152790 42152868 -108630685 + AT_rich Low_complexity Low_complexity 1 78 0 22 0 0 0 chr11 42153090 42153112 -108630441 + AT_rich Low_complexity Low_complexity 1 22 0 291 281 20 84 chr11 42153325 42153373 -108630180 - LTR67 LTR ERVL -2 555 505 1399 197 16 89 chr11 42153373 42153465 -108630088 - MER61A LTR ERV1 0 343 246 2396 57 0 44 chr11 42153465 42153782 -108629771 + AluY SINE Alu 2 304 -7 1399 197 16 89 chr11 42153782 42154059 -108629494 - MER61A LTR ERV1 -97 246 1 291 281 20 84 chr11 42154059 42154213 -108629340 - LTR67 LTR ERVL -52 505 366 234 250 16 0 chr11 42154367 42154431 -108629122 + GA-rich Low_complexity Low_complexity 2 66 0 23 54 0 0 chr11 42155400 42155437 -108628116 + AT_rich Low_complexity Low_complexity 1 37 0 185 159 23 0 chr11 42156357 42156401 -108627152 + (TAAA)n Simple_repeat Simple_repeat 1 45 0 215 250 54 18 chr11 42156518 42156574 -108626979 - L2 LINE L2 -5 3267 3210 346 246 43 51 chr11 42156669 42156807 -108626746 - LTR27 LTR ERV1 -2 634 498 2072 211 31 23 chr11 42156901 42157495 -108626058 - LTR27 LTR ERV1 -141 495 3 1670 157 34 11 chr11 42157495 42157979 -108625574 - LTR27-int LTR ERV1 0 6995 3796 2209 105 13 0 chr11 42159422 42159726 -108623827 + AluSp SINE Alu 1 308 -5 29 0 0 0 chr11 42159726 42159755 -108623798 + AT_rich Low_complexity Low_complexity 1 29 0 1692 220 53 12 chr11 42160851 42161265 -108622288 + MLT1C LTR MaLR 34 464 -3 312 132 42 16 chr11 42161290 42161411 -108622142 + CT-rich Low_complexity Low_complexity 1 124 0 35 41 0 0 chr11 42161571 42161620 -108621933 + AT_rich Low_complexity Low_complexity 1 49 0 1693 178 3 17 chr11 42162086 42162384 -108621169 - AluJb SINE Alu -18 294 1 261 252 197 27 chr11 42162410 42162557 -108620996 - MIR SINE MIR -51 211 40 423 269 90 0 chr11 42163240 42163374 -108620179 + MIR SINE MIR 70 215 -47 289 292 100 23 chr11 42163414 42163544 -108620009 - L2 LINE L2 -9 3304 3165 1619 93 0 9 chr11 42163945 42164171 -108619382 + AluSg/x SINE Alu 86 309 -3 249 287 46 19 chr11 42165017 42165125 -108618428 + MIR SINE MIR 81 191 -71 1309 213 56 11 chr11 42165130 42165416 -108618137 + AluJo SINE Alu 2 300 -2 213 169 46 23 chr11 42165627 42165757 -108617796 + (TTATA)n Simple_repeat Simple_repeat 5 137 0 1460 141 26 4 chr11 42166901 42167135 -108616418 - L1PB3 LINE L1 -4 6150 5912 14566 146 42 31 chr11 42167496 42170184 -108613369 + Tigger2 DNA MER2_type 2 2717 -1 187 400 11 11 chr11 42170675 42170765 -108612788 + L2 LINE L2 3141 3230 -42 287 304 26 9 chr11 42172194 42172309 -108611244 - MIR SINE MIR -55 207 91 197 167 19 0 chr11 42175330 42175384 -108608169 + (TA)n Simple_repeat Simple_repeat 2 56 0 280 274 124 90 chr11 42175412 42175481 -108608072 + MLT1J LTR MaLR 159 224 -287 2106 118 3 13 chr11 42175481 42175794 -108607759 - AluSq SINE Alu -3 310 1 280 274 124 90 chr11 42175794 42175958 -108607595 + MLT1J LTR MaLR 224 400 -111 243 0 0 0 chr11 42176014 42176041 -108607512 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1290 217 63 114 chr11 42177997 42178661 -108604892 - L1MC4 LINE L1 -19 8023 7394 1227 245 184 21 chr11 42178672 42179578 -108603975 - L1MD3 LINE L1 -1 7994 6723 2133 115 13 3 chr11 42180374 42180679 -108602874 - AluSg SINE Alu -2 308 1 275 231 0 13 chr11 42180849 42180927 -108602626 + CT-rich Low_complexity Low_complexity 2 78 0 2200 86 0 16 chr11 42181861 42182164 -108601389 - AluSq SINE Alu -15 298 1 202 222 0 37 chr11 42182166 42182220 -108601333 + CT-rich Low_complexity Low_complexity 3 54 0 278 332 107 21 chr11 42184515 42184702 -108598851 + MIR SINE MIR 6 208 -54 258 343 20 20 chr11 42184892 42184994 -108598559 + L2 LINE L2 3171 3272 0 24 67 0 0 chr11 42185080 42185125 -108598428 + AT_rich Low_complexity Low_complexity 1 45 0 22 35 0 0 chr11 42186283 42186312 -108597241 + AT_rich Low_complexity Low_complexity 1 29 0 256 250 24 0 chr11 42186737 42186821 -108596732 + MLT1I LTR MaLR 324 409 0 620 274 95 74 chr11 42188233 42188613 -108594940 + MLT1I LTR MaLR 3 390 -19 21 57 0 0 chr11 42189449 42189484 -108594069 + AT_rich Low_complexity Low_complexity 1 35 0 304 227 0 0 chr11 42189564 42189630 -108593923 - MLT1K LTR MaLR 0 588 523 359 307 39 16 chr11 42189660 42189787 -108593766 - MLT1K LTR MaLR -128 460 331 609 195 125 8 chr11 42189832 42189960 -108593593 - Tigger7 DNA MER2_type -561 144 2 659 178 67 7 chr11 42190499 42190634 -108592919 - FLAM_C SINE Alu 0 143 1 369 0 0 0 chr11 42191157 42191198 -108592355 + (CA)n Simple_repeat Simple_repeat 2 42 0 1166 22 0 0 chr11 42191433 42191569 -108591984 - L1PA7 LINE L1 -274 5880 5745 1831 69 0 29 chr11 42191569 42191838 -108591715 + L1PA7 LINE L1 5889 6154 0 21 0 0 0 chr11 42191944 42191965 -108591588 + AT_rich Low_complexity Low_complexity 1 21 0 2479 103 17 3 chr11 42192044 42192394 -108591159 + THE1A LTR MaLR 1 355 0 10793 94 13 22 chr11 42192394 42193983 -108589570 + THE1A-int LTR MaLR 1 1575 -5 1815 123 0 78 chr11 42193993 42194376 -108589177 + THE1A LTR MaLR 3 355 0 236 229 0 21 chr11 42194376 42194424 -108589129 - L2 LINE L2 -268 3045 2999 180 0 0 0 chr11 42194815 42194835 -108588718 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2196 101 0 7 chr11 42195443 42195749 -108587804 + AluY SINE Alu 1 304 -7 192 368 70 9 chr11 42195920 42196034 -108587519 - MIR SINE MIR -137 125 5 222 150 0 0 chr11 42196636 42196676 -108586877 + (TG)n Simple_repeat Simple_repeat 1 40 0 265 393 50 7 chr11 42198055 42198195 -108585358 - MIR SINE MIR -71 191 46 1386 184 53 28 chr11 42198385 42198667 -108584886 + AluJb SINE Alu 5 293 -19 360 309 45 72 chr11 42198998 42199374 -108584179 - MLT1L LTR MaLR -137 478 113 1626 120 4 23 chr11 42199529 42199788 -108583765 - AluSx SINE Alu -58 254 1 1345 186 68 4 chr11 42199837 42200116 -108583437 - L1P LINE L1 -2223 3923 3627 2120 150 17 3 chr11 42200118 42200478 -108583075 + L1PA16 LINE L1 5797 6161 -5 1375 246 84 25 chr11 42204031 42204531 -108579022 - MER39 LTR ERV1 0 682 1 224 294 15 0 chr11 42204531 42204599 -108578954 + L2 LINE L2 2606 2674 -640 3725 153 35 23 chr11 42204609 42205303 -108578250 - MER39 LTR ERV1 -5 702 1 338 269 0 13 chr11 42205304 42205382 -108578171 + L2 LINE L2 2672 2748 -566 691 182 62 73 chr11 42205390 42205462 -108578091 - MLT1D LTR MaLR 0 505 434 1931 148 154 5 chr11 42205462 42205833 -108577720 - MSTA LTR MaLR 0 428 3 691 182 62 73 chr11 42205833 42205952 -108577601 - MLT1D LTR MaLR -71 434 316 * 3162 161 29 19 chr11 42205947 42206530 -108577023 + MER39B LTR ERV1 65 653 0 1193 236 49 3 chr11 42206530 42206807 -108576746 - MLT1D LTR MaLR -189 316 27 748 289 105 36 chr11 42207074 42207791 -108575762 + L1ME3A LINE L1 5188 5952 -218 23 0 0 0 chr11 42208860 42208883 -108574670 + AT_rich Low_complexity Low_complexity 1 23 0 27 0 0 0 chr11 42212113 42212140 -108571413 + AT_rich Low_complexity Low_complexity 1 27 0 28 48 0 0 chr11 42213778 42213820 -108569733 + AT_rich Low_complexity Low_complexity 1 42 0 520 311 0 20 chr11 42213876 42214024 -108569529 - MIR SINE MIR -112 150 6 2401 60 0 0 chr11 42214368 42214653 -108568900 + AluY SINE Alu 1 285 -26 182 387 13 0 chr11 42214709 42214784 -108568769 + MIR SINE MIR 187 262 0 189 121 0 0 chr11 42215072 42215105 -108568448 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 409 278 34 51 chr11 42215209 42215385 -108568168 - L2 LINE L2 -33 3280 3108 1308 253 8 23 chr11 42215605 42216084 -108567469 + L1M4 LINE L1 2863 3334 -2812 528 278 210 4 chr11 42216093 42216374 -108567179 - L1M4 LINE L1 -1601 4545 4207 1646 95 0 9 chr11 42216385 42216607 -108566946 + AluSq SINE Alu 76 295 -18 230 264 48 96 chr11 42216621 42216788 -108566765 - L2 LINE L2 -1501 1813 1655 207 0 0 0 chr11 42217973 42217996 -108565557 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 180 77 0 0 chr11 42218496 42218522 -108565031 + (TTA)n Simple_repeat Simple_repeat 2 27 0 227 176 20 0 chr11 42219270 42219321 -108564232 + HsTC2 DNA Tc2 6 57 -1841 2009 215 32 24 chr11 42219361 42219895 -108563658 - L1 LINE L1 -946 5200 4663 626 149 36 18 chr11 42219969 42220137 -108563416 + GA-rich Low_complexity Low_complexity 3 173 0 4577 170 46 25 chr11 42220139 42220623 -108562930 + L1MA9 LINE L1 5293 5765 -547 363 105 0 0 chr11 42220623 42220680 -108562873 + (CA)n Simple_repeat Simple_repeat 2 58 0 4577 170 46 25 chr11 42220680 42221194 -108562359 + L1MA9 LINE L1 5765 6312 0 324 262 55 35 chr11 42221216 42221418 -108562135 + HsTC2 DNA Tc2 1649 1854 -44 218 31 0 31 chr11 42221664 42221696 -108561857 + (TTTTG)n Simple_repeat Simple_repeat 1 31 0 1864 123 0 51 chr11 42221701 42221993 -108561560 - AluSx SINE Alu -35 277 1 5147 49 0 17 chr11 42222569 42223261 -108560292 - L1P LINE L1 -4064 2082 1403 * 25534 30 3 9 chr11 42223259 42227258 -108556295 + L1PA3 LINE L1 2182 6155 0 262 315 35 112 chr11 42227727 42227959 -108555594 - L2 LINE L2 -22 3291 3078 535 301 136 29 chr11 42228015 42228434 -108555119 - HAL1 LINE L1 -1244 1263 800 274 236 47 95 chr11 42228456 42228604 -108554949 + MLT1D LTR MaLR 4 144 -482 798 155 16 96 chr11 42228644 42228831 -108554722 + MLT1D LTR MaLR 334 505 0 4432 96 0 21 chr11 42229688 42230397 -108553156 + L1PA3 LINE L1 5462 6155 0 189 0 0 0 chr11 42231781 42231802 -108551751 + (CAAAA)n Simple_repeat Simple_repeat 1 21 0 244 233 33 0 chr11 42232027 42232087 -108551466 + GA-rich Low_complexity Low_complexity 1 62 0 14273 148 26 21 chr11 42233253 42235103 -108548450 - Tigger4(Zombi) DNA MER2_type 0 2731 864 2141 76 0 73 chr11 42235103 42235432 -108548121 - AluY SINE Alu -6 305 1 14273 148 26 21 chr11 42235432 42236078 -108547475 - Tigger4(Zombi) DNA MER2_type -1867 864 223 2293 253 48 40 chr11 42236128 42236852 -108546701 + MER21B LTR ERV1 27 756 -107 1964 179 129 18 chr11 42237454 42237671 -108545882 + L1MB5 LINE L1 5677 5869 -305 1716 205 8 16 chr11 42237671 42238037 -108545516 - MLT1A1 LTR MaLR -2 363 1 1964 179 129 18 chr11 42238037 42238263 -108545290 + L1MB5 LINE L1 5869 6174 0 625 311 111 36 chr11 42238573 42238846 -108544707 - L2 LINE L2 0 3313 3062 2186 126 39 17 chr11 42238846 42239202 -108544351 - THE1B LTR MaLR 0 364 1 625 311 111 36 chr11 42239202 42239433 -108544120 - L2 LINE L2 -251 3062 2768 245 138 0 17 chr11 42240621 42240679 -108542874 + (CA)n Simple_repeat Simple_repeat 1 57 0 231 109 16 31 chr11 42240683 42240747 -108542806 + (TTTTTA)n Simple_repeat Simple_repeat 3 65 0 6357 21 1 5 chr11 42240749 42241509 -108542044 - L1PA4 LINE L1 -3 6152 5396 23 0 0 0 chr11 42241509 42241532 -108542021 + AT_rich Low_complexity Low_complexity 1 23 0 33 85 0 0 chr11 42242068 42242150 -108541403 + AT_rich Low_complexity Low_complexity 1 82 0 1023 294 65 20 chr11 42242610 42242969 -108540584 - L1ME3 LINE L1 -46 6116 5722 1446 173 30 104 chr11 42242969 42243363 -108540190 - MLT1A1 LTR MaLR 0 365 1 1023 294 65 20 chr11 42243363 42243585 -108539968 - L1ME3 LINE L1 -440 5722 5511 1442 274 74 13 chr11 42243598 42244270 -108539283 - L1ME3 LINE L1 -1062 5084 4372 25 83 0 0 chr11 42244287 42244335 -108539218 + AT_rich Low_complexity Low_complexity 1 48 0 1252 276 104 8 chr11 42244338 42245009 -108538544 - L1ME3 LINE L1 -2911 3235 2500 669 251 60 50 chr11 42245303 42245622 -108537931 - L1ME3 LINE L1 -3704 2442 2121 642 253 19 7 chr11 42245722 42245876 -108537677 + MER58A DNA MER1_type 9 164 0 423 229 21 8 chr11 42247781 42247896 -108535657 + L1ME1 LINE L1 6064 6182 -2 35 45 0 0 chr11 42248149 42248193 -108535360 + AT_rich Low_complexity Low_complexity 1 44 0 1007 122 13 0 chr11 42248193 42248349 -108535204 - L1PB1 LINE L1 -1 6150 5993 714 81 36 0 chr11 42248349 42248460 -108535093 + L1PB1 LINE L1 5713 5827 -324 309 397 23 11 chr11 42248463 42248637 -108534916 - MIR SINE MIR -83 179 4 303 71 0 0 chr11 42248707 42248749 -108534804 + (ATG)n Simple_repeat Simple_repeat 3 44 0 325 325 25 31 chr11 42248806 42248966 -108534587 - MIR SINE MIR -32 230 72 219 36 0 0 chr11 42250776 42250804 -108532749 + (GA)n Simple_repeat Simple_repeat 2 29 0 25 51 0 0 chr11 42251677 42251716 -108531837 + AT_rich Low_complexity Low_complexity 1 39 0 213 231 0 19 chr11 42252657 42252709 -108530844 + (CATA)n Simple_repeat Simple_repeat 4 54 0 198 358 73 36 chr11 42253020 42253157 -108530396 - MIR SINE MIR -115 147 6 201 196 0 0 chr11 42253191 42253237 -108530316 + (TG)n Simple_repeat Simple_repeat 1 46 0 10561 54 1 9 chr11 42253602 42254999 -108528554 - L1PA5 LINE L1 -1936 4210 2825 9069 54 14 2 chr11 42254996 42256930 -108526623 + L1PA5 LINE L1 4215 6152 -2 2331 301 114 55 chr11 42257044 42258763 -108524790 - L2 LINE L2 -50 3263 1437 515 330 133 0 chr11 42258780 42258983 -108524570 + MIR SINE MIR 12 241 -21 2231 88 0 7 chr11 42259064 42259361 -108524192 - AluY SINE Alu -16 295 1 1909 101 0 8 chr11 42259708 42259976 -108523577 - AluY SINE Alu -16 295 30 2479 53 0 50 chr11 42260230 42260552 -108523001 + AluY SINE Alu 2 307 -4 186 264 0 88 chr11 42261599 42261690 -108521863 - L2 LINE L2 -10 3303 3221 2332 72 0 3 chr11 42261883 42262174 -108521379 + AluY SINE Alu 1 290 -21 2926 214 23 12 chr11 42263680 42264340 -108519213 + Tigger7 DNA MER2_type 2 668 -1819 588 127 0 148 chr11 42264356 42264498 -108519055 + Tigger7 DNA MER2_type 2455 2575 -12 365 241 11 0 chr11 42264548 42264635 -108518918 - MIR SINE MIR -2 260 173 2380 190 51 68 chr11 42264663 42265369 -108518184 + LTR8A LTR ERV1 34 727 0 608 289 126 16 chr11 42265719 42265965 -108517588 - LTR16A LTR ERVL 0 450 178 325 219 0 0 chr11 42266104 42266177 -108517376 - MER116 DNA Mariner -7 73 1 758 238 30 26 chr11 42266634 42266865 -108516688 - MLT1D LTR MaLR -273 232 1 5573 223 22 92 chr11 42268005 42269762 -108513791 + L1MA9 LINE L1 3 1637 -5531 501 224 24 0 chr11 42269762 42269887 -108513666 + L1MA9 LINE L1 1921 2048 -5120 2676 207 69 36 chr11 42269912 42270428 -108513125 + L1MA9 LINE L1 6434 6986 -347 189 0 0 0 chr11 42270428 42270449 -108513104 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 2676 207 69 36 chr11 42270449 42270714 -108512839 + L1MA9 LINE L1 6986 7241 -92 213 195 0 24 chr11 42270716 42270757 -108512796 + (TG)n Simple_repeat Simple_repeat 2 41 0 28 0 0 0 chr11 42270799 42270827 -108512726 + AT_rich Low_complexity Low_complexity 1 28 0 354 320 62 8 chr11 42272274 42272530 -108511023 - L1ME LINE L1 -317 5804 5535 1478 217 41 78 chr11 42272927 42273545 -108510008 - LTR28 LTR ERV1 -67 953 298 520 197 21 21 chr11 42273598 42273752 -108509801 - LTR28 LTR ERV1 -292 133 1 1147 191 0 13 chr11 42273846 42274077 -108509476 - L1PA16 LINE L1 -9 6157 5930 484 139 12 12 chr11 42274078 42274164 -108509389 + L1MC1 LINE L1 6244 6329 -4 960 126 0 0 chr11 42274637 42274788 -108508765 + (TA)n Simple_repeat Simple_repeat 2 152 0 2289 43 54 0 chr11 42274788 42275066 -108508487 - AluY SINE Alu -18 293 1 329 303 101 0 chr11 42275438 42275616 -108507937 + Charlie8 DNA MER1_type 70 265 -2152 247 329 24 12 chr11 42275901 42275983 -108507570 - L2 LINE L2 -16 3297 3215 614 199 0 23 chr11 42276297 42276473 -108507080 + (TA)n Simple_repeat Simple_repeat 1 172 0 406 295 81 23 chr11 42276502 42276675 -108506878 - MIR SINE MIR -48 214 32 1062 229 4 8 chr11 42277405 42277641 -108505912 + MLT1E2 LTR MaLR 389 623 -3 1676 64 57 43 chr11 42277867 42278148 -108505405 + AluY SINE Alu 1 285 -26 1834 113 0 39 chr11 42278866 42279177 -108504376 - AluSx SINE Alu -13 299 1 354 213 14 28 chr11 42279735 42279876 -108503677 + (CATA)n Simple_repeat Simple_repeat 4 142 0 326 216 23 45 chr11 42279882 42279970 -108503583 - L1MC4 LINE L1 -1340 6702 6617 1719 213 109 9 chr11 42280084 42280534 -108503019 - MER50 LTR ERV1 0 734 240 391 149 15 0 chr11 42280618 42280685 -108502868 - MER50 LTR ERV1 -657 77 10 564 308 43 53 chr11 42280882 42281181 -108502372 + L2 LINE L2 3013 3308 -5 252 170 0 0 chr11 42281259 42281312 -108502241 + GA-rich Low_complexity Low_complexity 3 55 0 2785 148 82 59 chr11 42281408 42282016 -108501537 + LTR29 LTR ERV1 1 622 0 1312 132 15 0 chr11 42282605 42282809 -108500744 - LTR62 LTR ERVK -2 717 511 974 166 32 0 chr11 42282805 42282992 -108500561 - MER50 LTR ERV1 -23 711 519 * 1260 183 109 67 chr11 42282995 42283427 -108500126 + LTR7 LTR ERV1 1 450 0 14519 171 24 35 chr11 42283427 42288673 -108494880 + HERVH LTR ERV1 1 4915 -2287 1372 180 4 0 chr11 42288670 42288937 -108494616 + HERVH LTR ERV1 5749 6016 -1697 * 3296 102 11 33 chr11 42288930 42289500 -108494053 + HERVH LTR ERV1 7157 7713 0 1299 178 102 60 chr11 42289500 42289932 -108493621 + LTR7 LTR ERV1 1 450 0 2015 178 0 6 chr11 42289932 42290297 -108493256 - MER50 LTR ERV1 -214 520 158 4744 118 4 31 chr11 42290300 42290932 -108492621 + L1MA2 LINE L1 5495 6102 -202 2216 91 7 0 chr11 42290932 42291217 -108492336 + AluSq SINE Alu 1 287 -26 4744 118 4 31 chr11 42291217 42291390 -108492163 + L1MA2 LINE L1 6102 6278 -26 1173 176 36 24 chr11 42291390 42291640 -108491913 + THE1C LTR MaLR 123 375 0 8226 143 63 20 chr11 42291643 42293155 -108490398 + THE1C-int LTR MaLR 4 1580 0 1733 184 18 44 chr11 42293155 42293540 -108490013 + THE1C LTR MaLR 1 375 0 2052 102 27 24 chr11 42293580 42293874 -108489679 + AluSx SINE Alu 1 295 -17 298 291 64 9 chr11 42294555 42294665 -108488888 - MIR SINE MIR -61 201 86 27 0 0 0 chr11 42295318 42295345 -108488208 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr11 42295473 42295494 -108488059 + AT_rich Low_complexity Low_complexity 1 21 0 1884 137 0 3 chr11 42296309 42296618 -108486935 - AluSq SINE Alu 0 308 1 275 325 102 51 chr11 42296690 42296945 -108486608 + L2 LINE L2 2839 3106 -166 264 59 0 0 chr11 42297189 42297223 -108486330 + (TG)n Simple_repeat Simple_repeat 2 35 0 2408 65 13 0 chr11 42297579 42297885 -108485668 + AluY SINE Alu 1 310 -1 235 179 18 0 chr11 42299562 42299618 -108483935 + MER53 DNA DNA 132 188 -1 453 62 0 0 chr11 42299732 42299797 -108483756 + (CA)n Simple_repeat Simple_repeat 2 66 0 7397 131 48 5 chr11 42302623 42303909 -108479644 - Tigger1 DNA MER2_type 0 2418 1077 33939 44 3 2 chr11 42303910 42310056 -108473497 + L1PA4 LINE L1 1 6152 -3 5939 173 26 6 chr11 42310060 42311130 -108472423 - Tigger1 DNA MER2_type -1326 1092 1 1332 31 0 0 chr11 42311556 42311715 -108471838 + L1PA4 LINE L1 5996 6154 -1 42 89 0 0 chr11 42312309 42312421 -108471132 + AT_rich Low_complexity Low_complexity 1 112 0 2533 46 0 10 chr11 42312498 42312803 -108470750 + AluY SINE Alu 1 302 -9 42 36 0 0 chr11 42314308 42314364 -108469189 + AT_rich Low_complexity Low_complexity 1 56 0 21 0 0 0 chr11 42314509 42314530 -108469023 + AT_rich Low_complexity Low_complexity 1 21 0 229 262 48 24 chr11 42315050 42315134 -108468419 + MIR SINE MIR 147 232 -30 1574 154 33 0 chr11 42316223 42316495 -108467058 - L1PBa LINE L1 -6577 286 6 2336 97 0 3 chr11 42316699 42317010 -108466543 + AluY SINE Alu 1 310 -1 24 32 0 0 chr11 42317845 42317876 -108465677 + AT_rich Low_complexity Low_complexity 1 31 0 303 186 0 0 chr11 42318817 42318914 -108464639 + (TA)n Simple_repeat Simple_repeat 2 98 0 34 0 0 0 chr11 42319069 42319103 -108464450 + AT_rich Low_complexity Low_complexity 1 34 0 320 254 158 18 chr11 42319709 42319823 -108463730 + L2 LINE L2 3183 3312 -1 409 311 88 20 chr11 42320163 42320414 -108463139 + L1M4 LINE L1 2785 3052 -3094 358 336 96 48 chr11 42320477 42320893 -108462660 - L2 LINE L2 -5 3308 2873 2746 3 0 13 chr11 42320948 42321253 -108462300 - AluYa5 SINE Alu -10 301 1 1385 235 97 20 chr11 42321339 42321743 -108461810 - MER70B LTR ERVL -143 435 1 430 327 53 45 chr11 42321745 42322011 -108461542 - L2 LINE L2 -499 2815 2548 460 284 123 50 chr11 42322115 42322457 -108461096 + L1MC/D LINE L1 5406 5772 -2036 313 275 168 23 chr11 42322677 42322808 -108460745 + L2 LINE L2 3161 3310 -3 203 312 92 28 chr11 42322848 42322989 -108460564 + MIR3 SINE MIR 57 206 -2 28 0 0 0 chr11 42323171 42323199 -108460354 + AT_rich Low_complexity Low_complexity 1 28 0 30 83 0 0 chr11 42323872 42323944 -108459609 + AT_rich Low_complexity Low_complexity 1 72 0 337 316 7 45 chr11 42324024 42324075 -108459478 + MLT1I LTR MaLR 58 109 -300 2370 123 11 11 chr11 42324075 42324450 -108459103 + THE1C LTR MaLR 1 375 0 337 316 7 45 chr11 42324450 42324553 -108459000 + MLT1I LTR MaLR 109 206 -203 369 296 55 67 chr11 42326039 42326329 -108457224 + MLT1H LTR MaLR 19 341 -188 373 318 53 108 chr11 42326493 42326871 -108456682 + L2 LINE L2 2916 3272 0 22 0 0 0 chr11 42327222 42327244 -108456309 + AT_rich Low_complexity Low_complexity 1 22 0 295 358 78 44 chr11 42329214 42329591 -108453962 - L2 LINE L2 -174 3139 2748 1142 221 9 5 chr11 42329591 42329808 -108453745 + MER20 DNA MER1_type 1 218 -1 295 358 78 44 chr11 42329808 42329900 -108453653 - L2 LINE L2 -565 2748 2661 1839 215 8 0 chr11 42330678 42331031 -108452522 + MLT1A1 LTR MaLR 8 363 -2 238 370 84 25 chr11 42331033 42331152 -108452401 + MIR SINE MIR 26 151 -111 268 266 26 44 chr11 42331754 42331867 -108451686 - MIR SINE MIR -95 167 57 2840 3 0 0 chr11 42332564 42332868 -108450685 - AluYa5 SINE Alu -7 304 1 2007 88 68 24 chr11 42333196 42333490 -108450063 - AluY SINE Alu -4 307 1 6395 173 63 107 chr11 42333811 42335424 -108448129 - MER52A LTR ERV1 0 1755 215 297 224 0 40 chr11 42335914 42335990 -108447563 - MER52A LTR ERV1 -1682 73 1 185 341 66 22 chr11 42336240 42336331 -108447222 + MIR SINE MIR 49 143 -119 360 200 0 0 chr11 42336566 42336641 -108446912 + (TA)n Simple_repeat Simple_repeat 2 76 0 2561 65 0 0 chr11 42336641 42336948 -108446605 - AluY SINE Alu -4 307 1 2084 103 0 7 chr11 42338096 42338378 -108445175 - AluSg1 SINE Alu -29 280 1 222 346 45 26 chr11 42338990 42339146 -108444407 - MIR SINE MIR -95 167 9 183 405 0 9 chr11 42339408 42339524 -108444029 - MIR3 SINE MIR -2 206 92 24 32 0 0 chr11 42339609 42339640 -108443913 + AT_rich Low_complexity Low_complexity 1 31 0 2162 131 33 38 chr11 42339755 42340121 -108443432 + THE1B LTR MaLR 1 364 0 694 310 98 12 chr11 42340265 42340591 -108442962 + MLT1J LTR MaLR 82 435 -76 2079 115 7 10 chr11 42340614 42340910 -108442643 - AluSx SINE Alu -17 295 1 25 0 0 0 chr11 42341200 42341225 -108442328 + AT_rich Low_complexity Low_complexity 1 25 0 181 414 39 8 chr11 42341346 42341474 -108442079 + L2 LINE L2 3125 3256 -16 843 291 52 61 chr11 42341806 42342348 -108441205 + L2 LINE L2 2763 3299 -14 2068 182 14 14 chr11 42342567 42342936 -108440617 + MLT1B LTR MaLR 22 390 0 221 245 19 0 chr11 42343077 42343130 -108440423 + GA-rich Low_complexity Low_complexity 2 55 0 212 239 0 0 chr11 42344880 42344926 -108438627 + GA-rich Low_complexity Low_complexity 3 48 0 337 302 57 31 chr11 42344967 42345126 -108438427 - L3 LINE CR1 -256 1321 1159 357 229 48 84 chr11 42345160 42345326 -108438227 - L2 LINE L2 -37 3276 3117 593 249 81 5 chr11 42345546 42345755 -108437798 + L1MD3 LINE L1 7758 7982 -13 798 285 45 78 chr11 42345810 42346439 -108437114 + L1MC4a LINE L1 5350 5957 -1851 7630 47 10 9 chr11 42346441 42348180 -108435373 - L1PA5 LINE L1 -2 6152 4410 12926 51 3 1 chr11 42348180 42349833 -108433720 + L1PA5 LINE L1 2749 4405 -1741 804 293 153 47 chr11 42349860 42350794 -108432759 + L1MC4a LINE L1 5954 7006 -802 213 94 0 0 chr11 42350794 42350826 -108432727 + (TAA)n Simple_repeat Simple_repeat 1 32 0 804 293 153 47 chr11 42350826 42350907 -108432646 + L1MC4a LINE L1 7006 7077 -731 2100 138 0 3 chr11 42350912 42351223 -108432330 + AluSg SINE Alu 1 310 0 431 305 119 52 chr11 42351323 42351430 -108432123 + L1MC4 LINE L1 7344 7442 -600 1150 195 22 123 chr11 42351430 42351836 -108431717 + MLT1A1 LTR MaLR 1 365 0 431 305 119 52 chr11 42351836 42352133 -108431420 + L1MC4 LINE L1 7442 7718 -324 1742 182 17 0 chr11 42352133 42352484 -108431069 - L1MA6 LINE L1 0 6300 5944 431 305 119 52 chr11 42352484 42352669 -108430884 + L1MC4 LINE L1 7718 7985 -57 2130 140 10 39 chr11 42352669 42353055 -108430498 - THE1C LTR MaLR 0 375 1 431 305 119 52 chr11 42353055 42353118 -108430435 + L1MC4 LINE L1 7985 8042 0 246 288 82 38 chr11 42354129 42354313 -108429240 + MLT1K LTR MaLR 397 588 0 1347 253 43 32 chr11 42355563 42356025 -108427528 + MLT1C LTR MaLR 1 467 0 1556 287 41 14 chr11 42356560 42356996 -108426557 + L1M3a LINE L1 3 450 -5505 243 373 39 13 chr11 42357126 42357279 -108426274 + L1M3a LINE L1 305 461 -5494 * 2460 277 46 23 chr11 42357263 42358660 -108424893 + L1M3a LINE L1 302 1714 -4321 * 19073 151 29 90 chr11 42358641 42363046 -108420507 + L1P LINE L1 6 4141 -2005 856 273 67 64 chr11 42363151 42363496 -108420057 - MLT1E2 LTR MaLR -66 560 215 339 358 133 28 chr11 42363837 42364055 -108419498 + MIR SINE MIR 7 247 -15 2095 125 0 0 chr11 42364787 42365099 -108418454 - AluSg1 SINE Alu 0 312 1 2264 53 7 4 chr11 42365218 42365539 -108418014 + AluY SINE Alu 1 322 0 10462 103 11 3 chr11 42365599 42367153 -108416400 + L1P LINE L1 2953 4518 -1628 1591 200 3 31 chr11 42367528 42367848 -108415705 - AluJb SINE Alu -1 311 1 345 24 0 0 chr11 42367921 42367963 -108415590 + (TG)n Simple_repeat Simple_repeat 2 43 0 2390 89 0 0 chr11 42368119 42368422 -108415131 - AluY SINE Alu -8 303 1 3032 270 58 48 chr11 42368773 42369844 -108413709 + L1M4b LINE L1 11 1092 -5767 226 244 141 67 chr11 42370243 42370378 -108413175 + MIR SINE MIR 91 235 -27 1844 159 17 0 chr11 42370386 42370681 -108412872 - AluJo SINE Alu -10 302 3 5662 113 38 0 chr11 42370786 42372004 -108411549 - L1PA13 LINE L1 -4 6159 4935 192 204 23 0 chr11 42372808 42372852 -108410701 - MIR SINE MIR -56 206 162 2059 117 0 7 chr11 42372971 42373252 -108410301 - AluSc SINE Alu -30 279 1 1505 197 24 38 chr11 42373361 42373731 -108409822 + MLT1A1 LTR MaLR 1 365 0 246 215 124 0 chr11 42377551 42377672 -108405881 - MER113 DNA MER1_type? -326 195 60 184 325 130 0 chr11 42377919 42377996 -108405557 + MIR SINE MIR 119 205 -57 5158 240 93 15 chr11 42378289 42380182 -108403371 - L1M LINE L1 -756 5390 3357 886 250 159 34 chr11 42380182 42380566 -108402987 - MLT1C LTR MaLR -2 465 34 403 196 108 32 chr11 42380574 42380732 -108402821 - L1M4 LINE L1 -5146 1396 1227 2249 269 80 25 chr11 42380801 42382264 -108401289 - L1MEc LINE L1 -2833 4124 2619 1493 264 114 26 chr11 42382275 42383078 -108400475 - L1MEc LINE L1 -4644 2315 1412 2301 100 0 3 chr11 42383078 42383389 -108400164 - AluY SINE Alu -1 310 1 1493 264 114 26 chr11 42383389 42383547 -108400006 - L1MEc LINE L1 -5547 1412 1269 360 188 62 0 chr11 42383558 42383622 -108399931 - L1MEc LINE L1 -5666 1193 1126 254 222 119 82 chr11 42383727 42383970 -108399583 + L1MC5 LINE L1 7401 7652 -309 307 300 22 0 chr11 42384123 42384213 -108399340 - L1MC4 LINE L1 -1337 6705 6614 * 322 274 48 0 chr11 42384161 42384245 -108399308 + L1MC4 LINE L1 6614 6701 -1341 2663 159 8 10 chr11 42384246 42384725 -108398828 + L1PA16 LINE L1 5687 6164 -2 24 67 0 0 chr11 42384818 42384863 -108398690 + AT_rich Low_complexity Low_complexity 1 45 0 25 75 0 0 chr11 42385138 42385191 -108398362 + AT_rich Low_complexity Low_complexity 1 53 0 213 178 0 0 chr11 42385374 42385419 -108398134 + (CATATA)n Simple_repeat Simple_repeat 5 49 0 1868 121 23 0 chr11 42386085 42386341 -108397212 + AluSx SINE Alu 36 297 -15 197 315 155 28 chr11 42386464 42386645 -108396908 + MIR SINE MIR 59 262 0 7366 39 0 0 chr11 42386815 42388308 -108395245 - L1PA4 LINE L1 -1 6154 4660 2928 120 0 17 chr11 42389578 42390037 -108393516 + L1P LINE L1 4326 4776 -1370 1846 139 26 71 chr11 42390026 42390408 -108393145 + THE1C-int LTR MaLR 1216 1580 0 * 1481 119 122 86 chr11 42390408 42390770 -108392783 + THE1C LTR MaLR 1 375 0 1954 273 45 14 chr11 42390918 42391490 -108392063 - MLT1G LTR MaLR 0 590 1 2237 101 0 3 chr11 42391719 42392015 -108391538 - AluSc SINE Alu -14 295 1 427 253 66 66 chr11 42392114 42392296 -108391257 - MIR SINE MIR -3 259 78 2191 118 0 3 chr11 42394097 42394401 -108389152 - AluSg1 SINE Alu -1 308 6 2297 130 23 3 chr11 42394408 42394762 -108388791 - THE1B LTR MaLR -3 361 1 9700 123 6 68 chr11 42394762 42396447 -108387106 - THE1B-int LTR MaLR 0 1580 1 2145 114 99 6 chr11 42396447 42396780 -108386773 - THE1B LTR MaLR 0 364 1 448 320 161 32 chr11 42397452 42397830 -108385723 + LTR33 LTR ERVL 24 450 -71 204 245 0 0 chr11 42397900 42397949 -108385604 - L2 LINE L2 0 3313 3265 832 136 38 0 chr11 42397995 42398127 -108385426 + MER72 LTR ERV1 586 722 0 881 150 6 35 chr11 42398687 42398860 -108384693 + LTR49-int LTR ERV1 1040 1207 -5124 351 257 0 27 chr11 42398862 42398936 -108384617 + tRNA-Glu-GAG tRNA tRNA 3 74 -1 497 186 0 0 chr11 42399151 42399237 -108384316 + LTR49-int LTR ERV1 1410 1495 -4836 3666 229 60 6 chr11 42399248 42399283 -108384270 + L1PA16 LINE L1 4737 4769 -1397 2020 193 68 2 chr11 42399283 42399683 -108383870 - MSTB LTR MaLR 0 426 1 3666 229 60 6 chr11 42399683 42400989 -108382564 + L1PA16 LINE L1 4769 6165 -1 1278 305 145 25 chr11 42400995 42401184 -108382369 - L2 LINE L2 -76 3237 3072 1601 212 42 16 chr11 42401184 42401562 -108381991 + MLT1B LTR MaLR 1 388 -2 1278 305 145 25 chr11 42401562 42402228 -108381325 - L2 LINE L2 -241 3072 2262 1730 199 3 0 chr11 42402880 42403172 -108380381 - AluJb SINE Alu -19 293 1 1869 176 0 0 chr11 42403646 42403941 -108379612 + AluJb SINE Alu 1 295 -17 318 274 132 0 chr11 42404298 42404404 -108379149 - MLT1L LTR MaLR -147 468 349 180 155 0 82 chr11 42405352 42405449 -108378104 + GA-rich Low_complexity Low_complexity 4 92 0 226 271 0 14 chr11 42405502 42405572 -108377981 + GA-rich Low_complexity Low_complexity 1 69 0 1575 172 29 11 chr11 42405627 42405906 -108377647 + AluJo SINE Alu 1 284 -28 369 0 0 0 chr11 42405906 42405947 -108377606 + (CA)n Simple_repeat Simple_repeat 2 42 0 2379 106 19 21 chr11 42405978 42406354 -108377199 + THE1C LTR MaLR 1 375 0 181 368 105 26 chr11 42406628 42406818 -108376735 + MIR SINE MIR 6 210 -52 280 96 173 0 chr11 42407056 42407108 -108376445 - MADE1 DNA Mariner 0 80 20 2380 88 3 0 chr11 42407532 42407829 -108375724 - AluSp SINE Alu -15 298 1 25 51 0 0 chr11 42408033 42408072 -108375481 + AT_rich Low_complexity Low_complexity 1 39 0 6488 82 3 1 chr11 42408179 42409675 -108373878 + L1PA7 LINE L1 4632 6141 -13 22 0 0 0 chr11 42409826 42409848 -108373705 + AT_rich Low_complexity Low_complexity 1 22 0 2138 94 17 7 chr11 42410417 42410714 -108372839 - AluY SINE Alu -11 300 1 40972 46 29 1 chr11 42411019 42416988 -108366565 + L1PA3 LINE L1 1 6136 -19 258 32 0 0 chr11 42416992 42417023 -108366530 + (TAA)n Simple_repeat Simple_repeat 3 33 0 31583 51 1 2 chr11 42418217 42422247 -108361306 + L1P LINE L1 1006 5034 -1112 211 238 12 83 chr11 42422748 42422832 -108360721 + MIR3 SINE MIR 100 177 -31 227 280 131 17 chr11 42422969 42423144 -108360409 - LTR37B LTR ERV1 -268 200 6 313 240 27 0 chr11 42423616 42423691 -108359862 - Charlie1 DNA MER1_type 0 2761 2685 41658 39 26 1 chr11 42423722 42429720 -108353833 + L1PA2 LINE L1 2 6152 -3 261 0 0 0 chr11 42429746 42429775 -108353778 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 2049 241 98 10 chr11 42429782 42430587 -108352966 - Charlie1 DNA MER1_type -100 2661 1786 1097 243 111 20 chr11 42430584 42430926 -108352627 - Charlie1 DNA MER1_type -2388 373 1 * 279 241 35 69 chr11 42430953 42431156 -108352397 - MER31-int LTR ERV1 -3638 1298 1103 748 226 36 87 chr11 42431848 42432206 -108351347 - LTR37B LTR ERV1 -118 350 11 23 54 0 0 chr11 42432225 42432262 -108351291 + AT_rich Low_complexity Low_complexity 1 37 0 26 30 0 0 chr11 42432732 42432765 -108350788 + AT_rich Low_complexity Low_complexity 1 33 0 327 223 0 43 chr11 42434431 42434525 -108349028 + L1M4 LINE L1 4517 4606 -1540 211 100 0 40 chr11 42434532 42434582 -108348971 + (TG)n Simple_repeat Simple_repeat 2 49 0 707 235 91 29 chr11 42434593 42434836 -108348717 + L1ME3A LINE L1 5912 6169 -1 222 200 0 0 chr11 42435086 42435126 -108348427 + (CA)n Simple_repeat Simple_repeat 1 40 0 216 86 0 0 chr11 42435358 42435393 -108348160 + (CAA)n Simple_repeat Simple_repeat 1 35 0 23 0 0 0 chr11 42435644 42435667 -108347886 + AT_rich Low_complexity Low_complexity 1 23 0 1754 181 0 13 chr11 42435916 42436225 -108347328 + AluJb SINE Alu 3 307 -5 2006 150 0 0 chr11 42436235 42436535 -108347018 + AluSc SINE Alu 1 300 -9 24 0 0 0 chr11 42436607 42436631 -108346922 + AT_rich Low_complexity Low_complexity 1 24 0 507 323 82 26 chr11 42436749 42437210 -108346343 + L1ME4a LINE L1 5464 5950 -171 230 227 191 0 chr11 42437300 42437410 -108346143 + L1ME4a LINE L1 5986 6116 -5 7283 42 7 0 chr11 42438700 42439644 -108343909 + L1PA4 LINE L1 5206 6155 0 959 83 0 0 chr11 42440864 42440996 -108342557 + L1MA2 LINE L1 6173 6304 0 339 154 0 90 chr11 42441020 42441098 -108342455 - AluJ/FLAM SINE Alu -223 79 9 21 36 0 0 chr11 42441866 42441894 -108341659 + AT_rich Low_complexity Low_complexity 1 28 0 1534 167 24 3 chr11 42442343 42442662 -108340891 + L1MA4 LINE L1 5970 6303 0 266 235 252 8 chr11 42442679 42442798 -108340755 + MIR SINE MIR 45 192 -70 2060 128 0 10 chr11 42443553 42443865 -108339688 + AluSg1 SINE Alu 1 309 0 214 179 0 54 chr11 42444441 42444497 -108339056 + (TATG)n Simple_repeat Simple_repeat 3 55 0 330 360 22 15 chr11 42444998 42445134 -108338419 - L2 LINE L2 0 3313 3177 875 201 40 48 chr11 42445415 42445718 -108337835 + MER2 DNA MER2_type 2 344 -1 22 35 0 0 chr11 42445771 42445800 -108337753 + AT_rich Low_complexity Low_complexity 1 29 0 6696 62 0 0 chr11 42447982 42448825 -108334728 + L1PA7 LINE L1 5301 6143 -11 651 265 12 19 chr11 42449377 42449539 -108334014 - MER5B DNA MER1_type -17 161 1 2639 14 0 0 chr11 42449636 42449924 -108333629 - AluYa5 SINE Alu 0 311 24 873 334 51 14 chr11 42450335 42450829 -108332724 + HAL1 LINE L1 4 515 -1992 512 335 74 0 chr11 42450900 42451115 -108332438 + MIR SINE MIR 32 262 0 1179 269 82 27 chr11 42451271 42451893 -108331660 + HAL1 LINE L1 718 1373 -1134 728 255 96 102 chr11 42451978 42452520 -108331033 - L1M4 LINE L1 -1213 4933 4395 454 262 28 7 chr11 42452596 42452741 -108330812 - L1MC4 LINE L1 -143 7899 7752 239 179 200 0 chr11 42454056 42454151 -108329402 + MER5C DNA MER1_type 134 247 -77 252 214 0 36 chr11 42454466 42454522 -108329031 + GA-rich Low_complexity Low_complexity 6 59 0 325 247 43 0 chr11 42454525 42454618 -108328935 - LTR67 LTR ERVL -3 554 458 1752 184 0 3 chr11 42455674 42455967 -108327586 + AluJb SINE Alu 6 297 -15 2282 79 0 0 chr11 42457094 42457372 -108326181 - AluY SINE Alu -13 298 21 1148 176 42 139 chr11 42458497 42458830 -108324723 - MLT1A1 LTR MaLR 0 365 75 1925 57 0 0 chr11 42458830 42459082 -108324471 + AluY SINE Alu 56 307 0 1148 176 42 139 chr11 42459082 42459151 -108324402 - MLT1A1 LTR MaLR -290 75 1 289 242 65 57 chr11 42459220 42459344 -108324209 + LTR16A1 LTR ERVL 331 455 -2 1229 318 42 75 chr11 42459801 42459986 -108323567 - L2 LINE L2 -3 3310 3120 2322 82 0 7 chr11 42459986 42460289 -108323264 + AluY SINE Alu 1 301 -10 1229 318 42 75 chr11 42460289 42460443 -108323110 - L2 LINE L2 -193 3120 2962 186 43 0 0 chr11 42460443 42460466 -108323087 + (TA)n Simple_repeat Simple_repeat 2 24 0 1229 318 42 75 chr11 42460466 42461195 -108322358 - L2 LINE L2 -351 2962 2280 2051 137 0 13 chr11 42461412 42461719 -108321834 - AluSx SINE Alu -9 303 1 1159 268 46 37 chr11 42464387 42464797 -108318756 + L2 LINE L2 2269 2682 -632 1214 259 82 32 chr11 42464896 42465368 -108318185 + MLT2B1 LTR ERVL 1 396 -18 2177 131 20 11 chr11 42467104 42467456 -108316097 + THE1A LTR MaLR 1 355 0 11021 108 8 11 chr11 42467456 42467833 -108315720 + THE1A-int LTR MaLR 1 378 -1202 2183 112 0 16 chr11 42467833 42468146 -108315407 + AluY SINE Alu 1 308 -3 11021 108 8 11 chr11 42468146 42469353 -108314200 + THE1A-int LTR MaLR 378 1580 0 2490 99 8 8 chr11 42469353 42469708 -108313845 + THE1A LTR MaLR 1 355 0 414 0 0 0 chr11 42469921 42469967 -108313586 + (CA)n Simple_repeat Simple_repeat 2 47 0 1883 78 0 48 chr11 42470400 42470671 -108312882 + AluY SINE Alu 36 293 -18 2193 68 0 27 chr11 42470905 42471233 -108312320 - AluY SINE Alu 0 320 1 2420 133 3 5 chr11 42471566 42471942 -108311611 + THE1C LTR MaLR 1 375 0 24 0 0 0 chr11 42472871 42472895 -108310658 + AT_rich Low_complexity Low_complexity 1 24 0 2443 54 20 0 chr11 42473117 42473411 -108310142 + AluY SINE Alu 1 300 -11 2084 134 0 0 chr11 42474315 42474605 -108308948 + AluSc SINE Alu 3 292 -17 246 62 0 0 chr11 42475463 42475495 -108308058 + (A)n Simple_repeat Simple_repeat 1 32 0 298 344 49 31 chr11 42476171 42476334 -108307219 - MIR SINE MIR -86 176 11 23 54 0 0 chr11 42477048 42477085 -108306468 + AT_rich Low_complexity Low_complexity 1 37 0 719 337 95 29 chr11 42477158 42477345 -108306208 - L2 LINE L2 0 3313 3140 711 289 67 39 chr11 42477345 42477705 -108305848 + MLT1A2 LTR MaLR 1 370 -4 719 337 95 29 chr11 42477705 42478322 -108305231 - L2 LINE L2 -173 3140 2450 252 354 81 23 chr11 42478438 42478513 -108305040 - L2 LINE L2 -2349 965 896 2274 103 0 6 chr11 42478513 42478824 -108304729 + AluSc SINE Alu 1 309 0 252 354 81 23 chr11 42478824 42479008 -108304545 - L2 LINE L2 -2418 896 691 1752 193 3 0 chr11 42479545 42479840 -108303713 + AluJb SINE Alu 1 296 -16 1205 134 0 6 chr11 42479927 42480106 -108303447 - AluSg/x SINE Alu -2 310 133 880 183 0 0 chr11 42480106 42480243 -108303310 - Charlie3 DNA MER1_type -2528 182 46 296 145 32 32 chr11 42480258 42480320 -108303233 + Tigger1 DNA MER2_type 1510 1571 -847 240 118 0 0 chr11 42480428 42480462 -108303091 + AluSg SINE Alu 1 34 -265 1269 139 0 10 chr11 42480562 42480763 -108302790 + AluSg/x SINE Alu 106 304 -8 6937 161 126 15 chr11 42481548 42482907 -108300646 + Tigger1 DNA MER2_type 4 1513 -905 3055 155 23 8 chr11 42482910 42483387 -108300166 - MER1A DNA MER1_type 0 529 46 1794 147 7 0 chr11 42483402 42483694 -108299859 + Tigger1 DNA MER2_type 1510 1803 -615 266 230 242 0 chr11 42533794 42533878 -108249675 + MLT1E LTR MaLR 5 108 -485 648 231 81 49 chr11 42533983 42534239 -108249314 + MLT1E LTR MaLR 115 361 -232 285 294 56 82 chr11 42534357 42534660 -108248893 + MLT1J2 LTR MaLR 103 397 -53 21 57 0 0 chr11 42535221 42535256 -108248297 + AT_rich Low_complexity Low_complexity 1 35 0 442 275 63 35 chr11 42536030 42536172 -108247381 - L2 LINE L2 0 3313 3168 24 0 0 0 chr11 42537356 42537380 -108246173 + AT_rich Low_complexity Low_complexity 1 24 0 205 305 158 0 chr11 42538123 42538218 -108245335 - L2 LINE L2 -1 3312 3203 2420 64 3 10 chr11 42538314 42538626 -108244927 - AluY SINE Alu -1 310 1 2136 107 4 0 chr11 42539426 42539707 -108243846 + AluSg SINE Alu 16 297 -13 358 316 163 14 chr11 42539903 42540112 -108243441 + MIR SINE MIR 23 262 0 7381 40 3 0 chr11 42540377 42541470 -108242083 + L1PA4 LINE L1 5060 6155 0 2113 127 3 0 chr11 42541570 42541870 -108241683 - AluSq SINE Alu -12 301 1 503 310 94 33 chr11 42543149 42543362 -108240191 - MIR SINE MIR 0 262 37 1784 151 142 0 chr11 42544554 42544872 -108238681 + THE1B LTR MaLR 1 363 -1 514 222 167 43 chr11 42545142 42545211 -108238342 + MER5A DNA MER1_type 8 67 -122 2414 60 3 7 chr11 42545211 42545513 -108238040 + AluY SINE Alu 1 301 -10 514 222 167 43 chr11 42545513 42545605 -108237948 + MER5A DNA MER1_type 67 189 0 427 320 74 6 chr11 42545622 42545797 -108237756 + MIR SINE MIR 15 201 -61 237 255 21 0 chr11 42545804 42545851 -108237702 - MER20 DNA MER1_type -170 49 2 697 225 46 0 chr11 42545873 42546024 -108237529 + MER20 DNA MER1_type 62 219 0 2302 93 0 3 chr11 42547224 42547525 -108236028 + AluSp SINE Alu 5 304 -9 207 354 53 82 chr11 42548216 42548558 -108234995 + L2 LINE L2 2015 2346 -968 1845 89 4 0 chr11 42548588 42548823 -108234730 + AluSp SINE Alu 58 293 -20 2146 87 0 4 chr11 42549001 42549277 -108234276 - AluSx SINE Alu -8 304 30 869 243 0 0 chr11 42551487 42551660 -108231893 - MER5A DNA MER1_type -3 186 14 2116 165 29 5 chr11 42551877 42552258 -108231295 - MLT1B LTR MaLR 0 390 1 666 207 0 0 chr11 42552592 42552708 -108230845 + FLAM_C SINE Alu 1 116 -17 210 278 0 0 chr11 42553254 42553308 -108230245 + A-rich Low_complexity Low_complexity 1 54 0 291 328 38 23 chr11 42553463 42553594 -108229959 - L2 LINE L2 -4 3268 3136 1568 195 17 23 chr11 42554032 42554334 -108229219 - AluJb SINE Alu -12 300 1 297 313 51 56 chr11 42554524 42554738 -108228815 + MLT1K LTR MaLR 214 426 -162 1542 104 9 13 chr11 42555633 42555864 -108227689 + AluSp SINE Alu 1 230 -83 4981 72 29 4 chr11 42555864 42556547 -108227006 + LTR30 LTR ERV1 23 722 0 702 59 49 0 chr11 42556547 42556649 -108226904 + AluSp SINE Alu 206 312 -1 2015 218 77 8 chr11 42556954 42557022 -108226531 - MER67D LTR ERV1 -3 511 449 294 50 0 0 chr11 42557022 42557062 -108226491 + (GA)n Simple_repeat Simple_repeat 1 40 0 2015 218 77 8 chr11 42557062 42557471 -108226082 - MER67D LTR ERV1 -65 449 1 1621 198 100 28 chr11 42557721 42558150 -108225403 - LTR48 LTR ERV1 -326 461 2 22 0 0 0 chr11 42558286 42558308 -108225245 + AT_rich Low_complexity Low_complexity 1 22 0 203 133 44 0 chr11 42558528 42558573 -108224980 + (TA)n Simple_repeat Simple_repeat 1 47 0 871 305 9 0 chr11 42558627 42558837 -108224716 - MLT1E2 LTR MaLR -93 533 322 237 302 0 0 chr11 42559041 42559127 -108224426 + L1ME LINE L1 5575 5660 -461 2235 205 31 83 chr11 42559178 42559890 -108223663 - LTR8 LTR ERV1 -23 668 3 21 0 0 0 chr11 42559933 42559954 -108223599 + AT_rich Low_complexity Low_complexity 1 21 0 4471 139 19 37 chr11 42561963 42562752 -108220801 + MER4E LTR ERV1 5 779 0 260 200 44 0 chr11 42562796 42562886 -108220667 + (TA)n Simple_repeat Simple_repeat 2 95 0 3449 139 76 37 chr11 42563179 42563292 -108220261 - LTR51 LTR ERV1 0 671 564 1636 144 127 86 chr11 42563292 42563701 -108219852 - MSTA LTR MaLR 0 428 3 3449 139 76 37 chr11 42563701 42564233 -108219320 - LTR51 LTR ERV1 -107 564 1 1438 283 96 28 chr11 42564516 42565342 -108218211 - L2 LINE L2 -1 3312 2376 280 169 345 14 chr11 42565345 42565487 -108218066 + MER53 DNA DNA 1 189 0 6405 67 2 0 chr11 42565527 42566360 -108217193 + L1PA5 LINE L1 1527 2361 -3785 6430 71 28 0 chr11 42566382 42567229 -108216324 - L1PA5 LINE L1 0 6154 5284 23365 55 5 0 chr11 42567229 42571002 -108212551 + L1PA5 LINE L1 2349 6137 -17 359 289 0 0 chr11 42571004 42571094 -108212459 - L1MC4 LINE L1 -1339 6703 6614 13744 139 25 20 chr11 42571270 42573158 -108210395 - Tigger1 DNA MER2_type 0 2418 540 2021 143 0 7 chr11 42573158 42573458 -108210095 - AluSx SINE Alu -14 298 1 13744 139 25 20 chr11 42573458 42573667 -108209886 - Tigger1 DNA MER2_type -1878 540 333 2171 118 0 7 chr11 42573667 42573964 -108209589 - AluSx SINE Alu -17 295 1 13744 139 25 20 chr11 42573964 42574271 -108209282 - Tigger1 DNA MER2_type -2085 333 2 201 171 0 0 chr11 42574469 42574504 -108209049 + T-rich Low_complexity Low_complexity 2 36 0 3014 107 70 16 chr11 42575698 42576183 -108207370 + MER9 LTR ERVK 1 511 0 2335 104 7 0 chr11 42577258 42577566 -108205987 - AluSp SINE Alu -3 310 1 22 0 0 0 chr11 42577668 42577690 -108205863 + AT_rich Low_complexity Low_complexity 1 22 0 413 250 94 0 chr11 42577767 42577927 -108205626 - L1ME LINE L1 -344 5777 5603 1907 135 7 16 chr11 42577927 42578230 -108205323 + AluSx SINE Alu 1 300 -12 401 303 64 52 chr11 42578271 42578522 -108205031 - L2 LINE L2 -18 3295 3042 352 303 45 8 chr11 42578669 42578801 -108204752 - L1ME LINE L1 -2415 5393 5257 238 346 59 52 chr11 42580150 42580303 -108203250 - L2 LINE L2 0 3272 3119 1199 259 122 20 chr11 42581552 42581954 -108201599 - MLT1H LTR MaLR -105 444 2 1485 156 0 8 chr11 42582240 42582483 -108201070 - AluSg/x SINE Alu 0 310 70 2654 155 56 23 chr11 42583358 42583874 -108199679 + L1MA7 LINE L1 5509 6041 -250 586 183 16 0 chr11 42583881 42584007 -108199546 + L1MA7 LINE L1 6159 6286 -5 1634 132 135 36 chr11 42584365 42584698 -108198855 + MLT2D LTR ERVL 1 366 -48 494 200 36 79 chr11 42584823 42584988 -108198565 + MLT1J1 LTR MaLR 44 201 -245 311 261 0 11 chr11 42585071 42585163 -108198390 + MLT1I LTR MaLR 318 408 -1 501 285 43 30 chr11 42585165 42585570 -108197983 - MLT1L LTR MaLR 0 615 137 302 226 95 36 chr11 42587277 42587361 -108196192 + L2 LINE L2 3148 3236 -36 470 320 34 23 chr11 42587426 42587601 -108195952 + MER5A DNA MER1_type 10 186 -3 1614 191 0 14 chr11 42590829 42591111 -108192442 + AluJb SINE Alu 3 280 -32 25 0 0 0 chr11 42591341 42591366 -108192187 + AT_rich Low_complexity Low_complexity 1 25 0 25 0 0 0 chr11 42593774 42593799 -108189754 + AT_rich Low_complexity Low_complexity 1 25 0 191 328 15 0 chr11 42594435 42594502 -108189051 + MIR SINE MIR 121 188 -74 348 287 20 40 chr11 42594673 42594774 -108188779 + MER5A DNA MER1_type 81 179 -10 5190 191 16 11 chr11 42594810 42596798 -108186755 + L1PA16 LINE L1 4145 6143 -23 2225 119 42 14 chr11 42596969 42597323 -108186230 - THE1B LTR MaLR 0 364 1 321 242 69 43 chr11 42597341 42597488 -108186065 - MIR SINE MIR -63 145 4 513 310 84 17 chr11 42598147 42598398 -108185155 - MLT1J LTR MaLR -156 355 51 1949 219 48 42 chr11 42598930 42599432 -108184121 + MLT1D LTR MaLR 1 505 0 222 321 219 0 chr11 42599494 42599631 -108183922 - MIR SINE MIR -43 219 53 1950 149 14 0 chr11 42599702 42599990 -108183563 - AluSx SINE Alu -13 299 8 688 295 43 0 chr11 42600034 42600241 -108183312 - MER58A DNA MER1_type -2 222 7 563 311 87 49 chr11 42600379 42600745 -108182808 + L2 LINE L2 2930 3309 -4 191 322 98 46 chr11 42601999 42602173 -108181380 + L2 LINE L2 2573 2755 -559 867 203 34 123 chr11 42602654 42603063 -108180490 - Charlie4a DNA MER1_type -97 411 37 1388 141 173 12 chr11 42603272 42603527 -108180026 + AluSg SINE Alu 1 296 -4 2145 134 0 0 chr11 42603529 42603834 -108179719 + AluSx SINE Alu 1 305 -7 190 135 0 81 chr11 42603895 42603932 -108179621 - L3b LINE CR1 -128 1455 1422 225 143 0 0 chr11 42603952 42603987 -108179566 - MLT1J LTR MaLR -380 87 53 1071 233 32 18 chr11 42604142 42604460 -108179093 + MLT1C LTR MaLR 136 618 -8 202 154 26 0 chr11 42604526 42604565 -108178988 + T-rich Low_complexity Low_complexity 1 40 0 665 212 120 0 chr11 42604614 42604831 -108178722 + L1M4 LINE L1 828 1070 -5472 2729 89 14 3 chr11 42604862 42605233 -108178320 - THE1C LTR MaLR 0 375 1 21 57 0 0 chr11 42605238 42605273 -108178280 + AT_rich Low_complexity Low_complexity 1 35 0 507 330 76 4 chr11 42605327 42605563 -108177990 + MIR SINE MIR 4 256 -6 422 307 220 8 chr11 42605901 42606142 -108177411 - MLT1I LTR MaLR -20 389 98 1702 181 98 17 chr11 42606220 42606579 -108176974 + MSTD LTR MaLR 1 388 -8 4392 250 17 57 chr11 42606586 42607377 -108176176 + MSTD-int LTR MaLR 1 640 -1011 4250 126 24 0 chr11 42607377 42608006 -108175547 + LTR9B LTR ERV1 1 644 0 4392 250 17 57 chr11 42608006 42608636 -108174917 + MSTD-int LTR MaLR 640 1294 -357 2514 235 96 2 chr11 42608788 42609349 -108174204 + MSTD-int LTR MaLR 1122 1735 0 1647 177 57 46 chr11 42609350 42609739 -108173814 + MSTD LTR MaLR 2 394 -2 646 201 72 127 chr11 42610084 42610528 -108173025 + L1MC4 LINE L1 7356 7942 -53 473 249 173 12 chr11 42612472 42612645 -108170908 + L1MD3 LINE L1 7742 7942 -53 343 361 137 26 chr11 42613045 42613788 -108169765 + L2 LINE L2 2059 2884 -430 1181 299 63 46 chr11 42613825 42614408 -108169145 + MLT1E LTR MaLR 1 593 0 371 336 122 18 chr11 42615477 42615706 -108167847 - MIR SINE MIR 0 262 10 271 398 56 15 chr11 42615712 42615908 -108167645 + MER115 DNA AcHobo 2 205 -488 868 233 67 33 chr11 42616049 42616289 -108167264 + MER115 DNA AcHobo 446 693 0 462 234 40 0 chr11 42617305 42617429 -108166124 - MER58 DNA MER1_type -3 2417 2289 207 162 0 0 chr11 42617603 42617640 -108165913 + (TTCA)n Simple_repeat Simple_repeat 4 40 0 1938 100 3 48 chr11 42617920 42618209 -108165344 - AluY SINE Alu -35 276 1 247 234 31 0 chr11 42618297 42618361 -108165192 + (TTCA)n Simple_repeat Simple_repeat 3 68 0 340 331 87 21 chr11 42618912 42619154 -108164399 - MIR SINE MIR 0 262 5 520 330 11 34 chr11 42620445 42620621 -108162932 + MER5B DNA MER1_type 1 172 -6 2198 115 10 0 chr11 42621570 42621865 -108161688 - AluSc SINE Alu -11 298 1 915 206 64 50 chr11 42621986 42622035 -108161518 - MER58A DNA MER1_type -2197 223 176 2082 135 0 0 chr11 42622035 42622332 -108161221 - AluSx SINE Alu -15 297 1 915 206 64 50 chr11 42622332 42622501 -108161052 - MER58A DNA MER1_type -2244 176 2 465 19 0 0 chr11 42623145 42623199 -108160354 + (TG)n Simple_repeat Simple_repeat 1 54 0 24 32 0 0 chr11 42624111 42624142 -108159411 + AT_rich Low_complexity Low_complexity 1 31 0 2501 67 0 6 chr11 42624516 42624828 -108158725 - AluY SINE Alu -1 310 1 33 0 0 0 chr11 42625859 42625892 -108157661 + AT_rich Low_complexity Low_complexity 1 33 0 182 328 33 0 chr11 42626272 42626333 -108157220 + L2 LINE L2 3244 3306 -7 286 306 208 0 chr11 42626431 42626575 -108156978 + L2 LINE L2 2181 2354 -960 1405 157 54 74 chr11 42626588 42626938 -108156615 + MER61A LTR ERV1 1 343 0 2072 177 53 51 chr11 42626947 42627554 -108155999 + MER61A-int LTR ERV1 12 700 -4517 2270 110 3 3 chr11 42627629 42627939 -108155614 - AluSq SINE Alu -1 312 3 6621 115 63 22 chr11 42627939 42628851 -108154702 + MER61A-int LTR ERV1 1329 2202 -4794 2404 70 3 0 chr11 42628851 42629150 -108154403 + AluY SINE Alu 1 300 -11 6621 115 63 22 chr11 42629150 42629536 -108154017 + MER61A-int LTR ERV1 2202 4949 -2047 467 215 32 0 chr11 42629536 42629629 -108153924 - MLT1B LTR MaLR -33 357 262 2088 113 41 0 chr11 42629630 42629922 -108153631 + AluSg SINE Alu 1 304 -6 17111 90 26 7 chr11 42629967 42632373 -108151180 + MER61A-int LTR ERV1 2767 5217 0 1429 156 50 95 chr11 42632373 42632732 -108150821 + MER61A LTR ERV1 1 343 0 216 356 103 68 chr11 42633202 42633601 -108149952 + L2 LINE L2 2860 3272 0 217 295 103 0 chr11 42634943 42635021 -108148532 + MIR SINE MIR 119 204 -58 524 239 18 0 chr11 42635329 42635438 -108148115 + MER81 DNA DNA 4 114 0 341 265 0 12 chr11 42635459 42635542 -108148011 + L2 LINE L2 3228 3309 -4 21 95 0 0 chr11 42636520 42636583 -108146970 + AT_rich Low_complexity Low_complexity 1 63 0 30 45 0 0 chr11 42637361 42637405 -108146148 + AT_rich Low_complexity Low_complexity 1 44 0 240 86 0 0 chr11 42638717 42638752 -108144801 + (CA)n Simple_repeat Simple_repeat 2 36 0 203 330 60 20 chr11 42640466 42640566 -108142987 + L2 LINE L2 3210 3313 0 186 221 0 88 chr11 42644030 42644098 -108139455 - MIR SINE MIR 0 262 201 722 267 6 0 chr11 42644117 42644282 -108139271 - MER45A DNA AcHobo -7 171 6 313 388 50 0 chr11 42644295 42644455 -108139098 - MIR SINE MIR -76 186 19 874 184 0 47 chr11 42645067 42645257 -108138296 + MIR SINE MIR 82 262 0 51 89 0 0 chr11 42645272 42645407 -108138146 + AT_rich Low_complexity Low_complexity 1 135 0 230 180 50 50 chr11 42645409 42645570 -108137983 + (TATAA)n Simple_repeat Simple_repeat 3 163 0 255 237 0 0 chr11 42645570 42645629 -108137924 - MIR SINE MIR 0 262 204 206 351 138 0 chr11 42645644 42645738 -108137815 - L2 LINE L2 -41 3231 3125 379 355 30 56 chr11 42646613 42646844 -108136709 + L2 LINE L2 3048 3272 0 2451 188 36 39 chr11 42646899 42647459 -108136094 + MER74A LTR ERVL 1 558 0 390 298 107 40 chr11 42648053 42648278 -108135275 + MIR SINE MIR 13 252 -10 874 249 94 49 chr11 42649185 42649485 -108134068 + MER110A LTR ERV1 24 350 -118 1920 79 21 28 chr11 42649485 42649776 -108133777 - L1PA10 LINE L1 0 6168 5880 874 249 94 49 chr11 42649776 42649901 -108133652 + MER110A LTR ERV1 350 468 0 194 203 0 13 chr11 42650117 42650196 -108133357 + (TA)n Simple_repeat Simple_repeat 2 79 0 300 53 0 0 chr11 42650196 42650234 -108133319 + (CA)n Simple_repeat Simple_repeat 2 39 0 917 155 62 6 chr11 42650299 42650460 -108133093 - MER58B DNA MER1_type -1 340 171 4984 130 31 7 chr11 42650477 42651346 -108132207 + L1MA3 LINE L1 4124 5013 -1133 5345 104 40 7 chr11 42651355 42652195 -108131358 + L1MA3 LINE L1 5436 6303 -2 30 27 0 0 chr11 42652196 42652233 -108131320 + AT_rich Low_complexity Low_complexity 1 37 0 295 313 73 0 chr11 42652236 42652332 -108131221 - MER58B DNA MER1_type -236 105 3 1184 265 82 30 chr11 42652334 42652772 -108130781 + MLT1L LTR MaLR 148 608 -7 180 0 0 0 chr11 42652790 42652810 -108130743 + (TC)n Simple_repeat Simple_repeat 1 20 0 2186 121 7 0 chr11 42653993 42654299 -108129254 + AluSp SINE Alu 4 311 -2 2096 121 7 0 chr11 42654309 42654606 -108128947 + AluSc SINE Alu 1 299 -10 233 288 117 9 chr11 42655403 42655514 -108128039 + MIR SINE MIR 74 196 -66 736 338 94 19 chr11 42655586 42656418 -108127135 + L2 LINE L2 2430 3313 0 194 309 49 12 chr11 42656493 42656574 -108126979 + L2 LINE L2 3186 3269 -3 692 116 66 25 chr11 42657887 42658008 -108125545 - MER20 DNA MER1_type -93 126 1 323 209 47 0 chr11 42658978 42659064 -108124489 + MIR SINE MIR 172 261 -1 25 51 0 0 chr11 42659991 42660030 -108123523 + AT_rich Low_complexity Low_complexity 1 39 0 224 207 17 52 chr11 42660479 42660537 -108123016 + L2 LINE L2 1859 1914 -1400 248 293 113 0 chr11 42660761 42660867 -108122686 + MIR3 SINE MIR 85 202 -6 193 260 20 0 chr11 42661170 42661220 -108122333 - L2 LINE L2 -5 3308 3258 763 169 0 0 chr11 42661423 42661541 -108122012 + FLAM_A SINE Alu 2 119 -14 203 182 227 0 chr11 42663091 42663135 -108120418 + MIR SINE MIR 95 148 -114 903 245 15 10 chr11 42663339 42663543 -108120010 + MER58A DNA MER1_type 5 209 -15 2374 60 0 35 chr11 42663572 42663887 -108119666 - AluY SINE Alu -7 304 1 910 258 148 9 chr11 42663934 42664271 -108119282 + Charlie7 DNA MER1_type 43 426 -2186 268 205 26 51 chr11 42664326 42664404 -108119149 + Charlie7 DNA MER1_type 437 512 -2100 204 40 0 0 chr11 42664475 42664500 -108119053 + (TG)n Simple_repeat Simple_repeat 1 25 0 197 133 0 0 chr11 42665300 42665330 -108118223 - MIR SINE MIR -71 191 162 1286 176 5 18 chr11 42665467 42665688 -108117865 - AluJo SINE Alu -9 303 86 272 309 111 11 chr11 42665767 42665948 -108117605 - MIR SINE MIR -62 200 2 271 273 71 30 chr11 42667286 42667385 -108116168 - L2 LINE L2 -1 3271 3169 193 191 24 0 chr11 42667481 42667523 -108116030 - L2 LINE L2 -96 3217 3175 252 86 0 0 chr11 42668159 42668194 -108115359 + (A)n Simple_repeat Simple_repeat 1 35 0 218 326 30 8 chr11 42668405 42668495 -108115058 + MIR SINE MIR 73 163 -45 707 254 11 11 chr11 42668945 42669126 -108114427 - L2 LINE L2 -2617 697 517 2086 126 17 0 chr11 42669304 42669606 -108113947 + AluSx SINE Alu 1 307 -5 1899 246 87 103 chr11 42669792 42671171 -108112382 + L2 LINE L2 1910 3251 -62 279 232 18 0 chr11 42671178 42671234 -108112319 - MIR SINE MIR -62 146 90 493 261 50 31 chr11 42671368 42671529 -108112024 + MIR SINE MIR 84 247 -15 281 336 16 39 chr11 42671916 42672044 -108111509 - MIR SINE MIR -50 212 88 216 395 90 8 chr11 42672312 42672446 -108111107 + L2 LINE L2 3122 3266 -6 193 202 71 60 chr11 42673371 42673455 -108110098 + L2 LINE L2 337 421 -2893 513 338 80 62 chr11 42674818 42675039 -108108514 - L2 LINE L2 -6 3307 3091 6078 171 13 14 chr11 42675039 42676948 -108106605 - L1PA13 LINE L1 0 6163 4193 513 338 80 62 chr11 42676948 42677190 -108106363 - L2 LINE L2 -222 3091 2836 1211 255 123 12 chr11 42677199 42677630 -108105923 - MLT1D LTR MaLR -1 504 26 338 279 122 69 chr11 42677662 42677775 -108105778 - L2 LINE L2 -510 2804 2698 1341 175 78 30 chr11 42677775 42678044 -108105509 - AluJo SINE Alu -30 282 1 338 279 122 69 chr11 42678044 42678249 -108105304 - L2 LINE L2 -616 2698 2469 14426 193 42 19 chr11 42679252 42685716 -108097837 + L1PB1 LINE L1 6 6859 -8 337 319 36 36 chr11 42687087 42687253 -108096300 + L2 LINE L2 3148 3313 0 2010 114 3 20 chr11 42688773 42689079 -108094474 + AluSx SINE Alu 1 301 -11 819 179 7 0 chr11 42689203 42689343 -108094210 - MLT1A1 LTR MaLR -1 364 224 302 307 51 51 chr11 42689987 42690124 -108093429 - MIR SINE MIR -84 178 42 204 219 0 0 chr11 42690836 42690877 -108092676 + (TATATG)n Simple_repeat Simple_repeat 2 42 0 309 344 6 6 chr11 42741913 42742076 -108041477 - MER103 DNA DNA -2 164 2 1569 126 8 12 chr11 42742415 42742670 -108040883 + L1PA13 LINE L1 5907 6160 -3 254 384 46 20 chr11 42742884 42743035 -108040518 + L2 LINE L2 2587 2741 -573 2534 61 0 3 chr11 42743169 42743481 -108040072 - AluY SINE Alu 0 311 1 539 267 47 41 chr11 42743481 42743560 -108039993 + L2 LINE L2 3108 3185 -128 832 295 67 39 chr11 42743560 42743991 -108039562 - MLT1J1 LTR MaLR -3 443 1 539 267 47 41 chr11 42743991 42744083 -108039470 + L2 LINE L2 3185 3280 -33 667 278 61 0 chr11 42744142 42744340 -108039213 - MIR SINE MIR -21 241 32 195 186 0 0 chr11 42745485 42745528 -108038025 + (TATG)n Simple_repeat Simple_repeat 2 44 0 221 200 0 50 chr11 42746226 42746286 -108037267 + CT-rich Low_complexity Low_complexity 1 57 0 186 276 81 35 chr11 42746903 42746990 -108036563 - L2 LINE L2 -84 3229 3139 22 0 0 0 chr11 42747255 42747277 -108036276 + AT_rich Low_complexity Low_complexity 1 22 0 1402 244 60 22 chr11 42747326 42747776 -108035777 + MLT1C LTR MaLR 1 467 0 2151 183 14 33 chr11 42747897 42748323 -108035230 - MLT2B2 LTR ERVL 0 515 98 2817 116 0 57 chr11 42748323 42748797 -108034756 - L1MA5 LINE L1 -406 5894 5448 2314 123 48 18 chr11 42748797 42749032 -108034521 + L1MA5 LINE L1 5888 6144 -156 2411 108 39 3 chr11 42749032 42749394 -108034159 + THE1C LTR MaLR 1 375 0 2314 123 48 18 chr11 42749394 42749554 -108033999 + L1MA5 LINE L1 6144 6298 -2 737 125 9 0 chr11 42749584 42749696 -108033857 - MLT2B2 LTR ERVL -407 113 1 2313 107 0 0 chr11 42749839 42750148 -108033405 + AluY SINE Alu 1 309 -2 652 316 43 37 chr11 42750164 42750487 -108033066 - L3 LINE CR1 -92 1485 1161 25 0 0 0 chr11 42751792 42751817 -108031736 + AT_rich Low_complexity Low_complexity 1 25 0 224 254 119 0 chr11 42752195 42752254 -108031299 + L2 LINE L2 3204 3269 -3 180 158 0 0 chr11 42752255 42752293 -108031260 + (ACTG)n Simple_repeat Simple_repeat 2 39 0 314 54 0 0 chr11 42752373 42752410 -108031143 + U2 snRNA snRNA 1 37 -151 689 364 62 9 chr11 42752823 42753257 -108030296 + L2 LINE L2 2462 2918 -396 2170 99 44 0 chr11 42753310 42753603 -108029950 - AluSg1 SINE Alu -3 306 1 279 0 0 0 chr11 42753923 42753954 -108029599 + (CAAA)n Simple_repeat Simple_repeat 4 34 0 1526 194 4 18 chr11 42754308 42754587 -108028966 + AluJo SINE Alu 21 295 -17 1170 221 90 15 chr11 42755068 42755458 -108028095 - LTR37A LTR ERV1 0 426 8 483 215 128 51 chr11 42755558 42755753 -108027800 + MER46C DNA MER2_type 99 308 -30 781 212 50 45 chr11 42755767 42755920 -108027633 - MER63A DNA MER1_type -1488 200 44 288 0 0 0 chr11 42755920 42755952 -108027601 + (TG)n Simple_repeat Simple_repeat 2 33 0 781 212 50 45 chr11 42755952 42755996 -108027557 - MER63A DNA MER1_type -1644 44 2 1028 111 0 0 chr11 42756527 42756662 -108026891 - AluSg/x SINE Alu -25 287 153 230 276 122 58 chr11 42756666 42756822 -108026731 - L2 LINE L2 -15 3298 3133 195 299 75 0 chr11 42756877 42756944 -108026609 - L2 LINE L2 -258 3014 2943 768 63 118 16 chr11 42757128 42757255 -108026298 + AluY SINE Alu 171 310 -1 255 333 23 16 chr11 42757305 42757434 -108026119 + L2 LINE L2 3179 3308 -5 289 209 68 107 chr11 42757545 42757722 -108025831 + L2 LINE L2 2805 2974 -340 2030 133 0 13 chr11 42757747 42758048 -108025505 - AluSx SINE Alu -15 297 1 317 325 96 6 chr11 42758120 42758286 -108025267 + L2 LINE L2 3131 3311 -2 893 263 32 88 chr11 42758608 42759018 -108024535 + MLT1J LTR MaLR 92 478 -33 658 318 56 0 chr11 42759593 42759807 -108023746 - MIR SINE MIR -21 241 16 401 280 83 42 chr11 42760811 42761004 -108022549 - MIR SINE MIR -13 249 49 1289 184 78 45 chr11 42761078 42761481 -108022072 + LTR47A LTR ERVL 1 452 0 1122 250 79 21 chr11 42761481 42761809 -108021744 + MLT1A2 LTR MaLR 24 370 -4 1511 201 20 3 chr11 42762509 42762807 -108020746 - AluJo SINE Alu -9 303 1 274 308 14 68 chr11 42762933 42763079 -108020474 + L2 LINE L2 2926 3063 -250 237 196 20 0 chr11 42763090 42763141 -108020412 + (TAA)n Simple_repeat Simple_repeat 1 52 0 612 284 119 0 chr11 42763142 42763343 -108020210 - MIR SINE MIR -18 244 20 314 349 8 23 chr11 42763499 42763628 -108019925 + L2 LINE L2 3185 3311 -2 204 128 0 26 chr11 42764060 42764099 -108019454 + (CA)n Simple_repeat Simple_repeat 2 39 0 247 304 167 39 chr11 42764266 42764470 -108019083 + L2 LINE L2 3080 3309 -4 386 336 74 9 chr11 42765334 42765551 -108018002 - MIR SINE MIR -24 238 8 2111 133 0 0 chr11 42765612 42765906 -108017647 + AluSx SINE Alu 1 294 -18 303 329 68 55 chr11 42766523 42766742 -108016811 + MIR SINE MIR 1 222 -40 417 348 31 25 chr11 42767386 42767587 -108015966 - MIR3 SINE MIR -10 198 5 2333 67 0 3 chr11 42767618 42767934 -108015619 - AluY SINE Alu 0 315 1 280 152 30 0 chr11 42768181 42768247 -108015306 + (TA)n Simple_repeat Simple_repeat 2 69 0 180 0 0 0 chr11 42769867 42769887 -108013666 + (TAA)n Simple_repeat Simple_repeat 2 21 0 243 320 13 0 chr11 42772289 42772367 -108011186 + L1MC/D LINE L1 5485 5563 -558 288 303 104 62 chr11 42773546 42773787 -108009766 - MIR SINE MIR 0 262 12 2301 32 0 7 chr11 42774167 42774449 -108009104 - L1PA4 LINE L1 -259 5896 5617 1851 51 51 0 chr11 42774449 42774682 -108008871 + L1PA4 LINE L1 5901 6149 -6 2104 125 3 3 chr11 42775179 42775483 -108008070 + AluSc SINE Alu 4 307 -2 255 189 0 0 chr11 42775838 42775891 -108007662 + (TCTA)n Simple_repeat Simple_repeat 2 54 0 28 0 0 0 chr11 42775998 42776026 -108007527 + AT_rich Low_complexity Low_complexity 1 28 0 233 317 0 0 chr11 42776026 42776086 -108007467 + L2 LINE L2 3213 3272 0 315 259 75 52 chr11 42776151 42776325 -108007228 + L1MC/D LINE L1 5638 5815 -1993 1216 204 12 0 chr11 42776358 42776598 -108006955 - L1PA15 LINE L1 -20 6145 5903 10321 192 1 0 chr11 42776648 42779697 -108003856 + L1PA13 LINE L1 3161 6152 -11 5982 122 70 149 chr11 42779708 42780593 -108002960 - Tigger1 DNA MER2_type -1030 1388 668 2137 109 3 3 chr11 42780593 42780896 -108002657 - AluSp SINE Alu -10 303 1 5982 122 70 149 chr11 42780896 42781516 -108002037 - Tigger1 DNA MER2_type -1750 668 1 201 349 61 23 chr11 42781543 42781675 -108001878 - MIR SINE MIR -105 157 21 21 0 0 0 chr11 42781932 42781953 -108001600 + AT_rich Low_complexity Low_complexity 1 21 0 6562 146 17 22 chr11 42782125 42784365 -107999188 - L1MA3 LINE L1 0 7724 5480 * 19782 172 46 16 chr11 42784343 42784755 -107998798 - L1MA3 LINE L1 -3250 4315 3917 643 131 37 0 chr11 42784755 42784862 -107998691 + HY1 scRNA scRNA 1 111 -1 19782 172 46 16 chr11 42784862 42785275 -107998278 - L1MA3 LINE L1 -3648 3917 3518 787 44 0 26 chr11 42785275 42785389 -107998164 + (TTCC)n Simple_repeat Simple_repeat 2 112 0 19782 172 46 16 chr11 42785389 42785654 -107997899 - L1MA3 LINE L1 -4047 3518 3262 575 0 0 0 chr11 42785654 42785723 -107997830 - L1PA3 LINE L1 -3 6152 6084 19782 172 46 16 chr11 42785723 42786627 -107996926 - L1MA3 LINE L1 -4303 3262 2387 1713 183 14 0 chr11 42786627 42786912 -107996641 + AluSx SINE Alu 1 289 -23 19782 172 46 16 chr11 42786912 42789100 -107994453 - L1MA3 LINE L1 -5178 2387 16 504 32 0 0 chr11 42789127 42789189 -107994364 + (TATAG)n Simple_repeat Simple_repeat 3 64 0 388 301 72 26 chr11 42789191 42789344 -107994209 + MIR SINE MIR 16 175 -87 447 229 25 25 chr11 42789351 42789495 -107994058 + MER63 DNA MER1_type 689 1057 -4 226 277 36 24 chr11 42789500 42789583 -107993970 + MIR SINE MIR 173 256 -6 359 241 193 21 chr11 42789592 42789737 -107993816 - MIR SINE MIR -58 204 35 435 315 51 17 chr11 42790000 42790178 -107993375 - MIR SINE MIR 0 262 79 180 0 0 0 chr11 42790863 42790883 -107992670 + (TC)n Simple_repeat Simple_repeat 1 20 0 2131 128 0 3 chr11 42791094 42791399 -107992154 + AluSc SINE Alu 1 304 -5 613 151 0 67 chr11 42791475 42791594 -107991959 - AluJb SINE Alu -23 289 179 180 355 122 0 chr11 42792317 42792424 -107991129 + L2 LINE L2 2638 2757 -557 941 327 111 6 chr11 42792822 42793318 -107990235 + L1MEc LINE L1 93 640 -5756 8979 162 25 19 chr11 42793435 42795187 -107988366 + L1PA13 LINE L1 3581 5320 -843 1843 150 7 0 chr11 42795187 42795460 -107988093 + AluSx SINE Alu 6 280 -32 195 100 0 0 chr11 42795460 42795490 -107988063 + (CAAT)n Simple_repeat Simple_repeat 4 33 0 8979 162 25 19 chr11 42795490 42796325 -107987228 + L1PA13 LINE L1 5319 6163 0 1319 285 76 52 chr11 42796765 42797909 -107985644 + L1MEc LINE L1 650 1820 -4576 21 36 0 0 chr11 42797974 42798002 -107985551 + AT_rich Low_complexity Low_complexity 1 28 0 352 304 52 0 chr11 42798083 42798198 -107985355 + MIR3 SINE MIR 36 156 -52 273 378 37 24 chr11 42798750 42798914 -107984639 + MIR3 SINE MIR 39 204 -4 229 280 118 11 chr11 42799536 42799629 -107983924 + MIR3 SINE MIR 58 160 -48 342 302 0 10 chr11 42799866 42799962 -107983591 + L2 LINE L2 3178 3272 0 310 338 125 34 chr11 42800404 42800700 -107982853 + L2 LINE L2 2974 3296 -17 417 266 52 13 chr11 42801535 42801689 -107981864 + MIR SINE MIR 28 187 -75 181 295 167 0 chr11 42801816 42801894 -107981659 - L2 LINE L2 -3 3269 3179 2078 101 28 3 chr11 42802094 42802382 -107981171 - AluSp SINE Alu -18 295 1 742 156 32 19 chr11 42802412 42802566 -107980987 - L1MA8 LINE L1 -4 6287 6132 27 0 0 0 chr11 42803590 42803617 -107979936 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr11 42803836 42803857 -107979696 + AT_rich Low_complexity Low_complexity 1 21 0 889 235 5 31 chr11 42805160 42805356 -107978197 - MLT1E2 LTR MaLR -418 208 18 422 302 52 38 chr11 42805818 42806300 -107977253 + L1M4 LINE L1 4892 5388 -796 2058 198 14 12 chr11 42806300 42806724 -107976829 + MSTB LTR MaLR 1 425 -1 422 302 52 38 chr11 42806724 42806913 -107976640 + L1M4 LINE L1 5388 5573 -611 347 345 0 18 chr11 42807051 42807161 -107976392 - L2 LINE L2 0 3272 3165 317 312 11 11 chr11 42807604 42807697 -107975856 - MIR3 SINE MIR -38 170 78 416 330 53 9 chr11 42808541 42808768 -107974785 + MIR SINE MIR 1 237 -25 324 102 0 0 chr11 42809455 42809504 -107974049 + (TG)n Simple_repeat Simple_repeat 2 50 0 456 19 0 0 chr11 42810846 42810899 -107972654 + (CA)n Simple_repeat Simple_repeat 2 54 0 186 337 126 11 chr11 42811131 42811226 -107972327 - MIR3 SINE MIR -25 183 78 474 49 0 0 chr11 42813106 42813167 -107970386 + (TG)n Simple_repeat Simple_repeat 1 61 0 22 0 0 0 chr11 42813991 42814013 -107969540 + AT_rich Low_complexity Low_complexity 1 22 0 464 291 141 9 chr11 42814044 42814271 -107969282 + MIR SINE MIR 2 258 -4 352 216 30 90 chr11 42815488 42815622 -107967931 + MLT1K LTR MaLR 408 533 -55 494 304 118 10 chr11 42815985 42816189 -107967364 - MIR SINE MIR -18 244 19 205 243 0 0 chr11 42816239 42816276 -107967277 + L2 LINE L2 3218 3254 -18 235 317 0 49 chr11 42817396 42817519 -107966034 + GA-rich Low_complexity Low_complexity 6 122 0 1953 94 16 8 chr11 42818530 42818806 -107964747 + AluSx SINE Alu 34 312 0 2020 125 7 0 chr11 42820152 42820433 -107963120 - AluSp SINE Alu -30 283 1 428 174 12 23 chr11 42821376 42821462 -107962091 + Tigger7 DNA MER2_type 2503 2587 0 336 279 0 0 chr11 42821477 42821563 -107961990 - MIR SINE MIR 0 262 177 380 326 228 10 chr11 42822285 42822478 -107961075 + MIR SINE MIR 28 262 0 1227 174 185 7 chr11 42822493 42822780 -107960773 - MER44D DNA MER2_type 0 609 2 233 365 138 6 chr11 42823095 42823276 -107960277 - MIR SINE MIR -21 241 37 23 0 0 0 chr11 42823423 42823446 -107960107 + AT_rich Low_complexity Low_complexity 1 23 0 250 351 107 0 chr11 42823483 42823614 -107959939 - MIR3 SINE MIR -7 201 57 348 24 0 0 chr11 42823685 42823726 -107959827 + (TG)n Simple_repeat Simple_repeat 2 42 0 306 254 0 14 chr11 42823882 42823953 -107959600 - L2 LINE L2 -5 3308 3239 374 262 199 31 chr11 42824462 42824653 -107958900 - MIR SINE MIR -12 250 28 226 291 38 25 chr11 42825780 42825859 -107957694 - MIR SINE MIR -108 154 75 233 211 19 19 chr11 42827190 42827242 -107956311 + GA-rich Low_complexity Low_complexity 3 54 0 250 244 163 0 chr11 42827479 42827565 -107955988 + MIR3 SINE MIR 109 208 0 240 35 0 0 chr11 42829628 42829657 -107953896 + (CGGGGG)n Simple_repeat Simple_repeat 2 30 0 267 215 0 0 chr11 42830033 42830098 -107953455 + A-rich Low_complexity Low_complexity 1 65 0 201 178 0 44 chr11 42830355 42830400 -107953153 + CT-rich Low_complexity Low_complexity 1 43 0 2291 86 0 16 chr11 42830977 42831292 -107952261 + AluSg SINE Alu 1 310 0 257 299 246 27 chr11 42832734 42832921 -107950632 - MIR SINE MIR -6 256 30 562 282 168 5 chr11 42834128 42834337 -107949216 - MIR SINE MIR -2 260 18 511 284 159 39 chr11 42834661 42835077 -107948476 - MLT1H LTR MaLR 0 549 64 1978 153 30 24 chr11 42835077 42835450 -107948103 - THE1C LTR MaLR 0 375 1 511 284 159 39 chr11 42835450 42835522 -107948031 - MLT1H LTR MaLR -485 64 2 201 293 35 0 chr11 42836111 42836169 -107947384 + L2 LINE L2 3254 3313 0 2030 168 75 0 chr11 42836348 42836746 -107946807 - MSTA LTR MaLR 0 428 1 781 277 58 30 chr11 42836974 42837236 -107946317 + MER2 DNA MER2_type 1 275 -70 756 218 26 13 chr11 42837236 42837392 -107946161 - FRAM SINE Alu -8 158 1 781 277 58 30 chr11 42837392 42837458 -107946095 + MER2 DNA MER2_type 275 338 -7 211 200 0 0 chr11 42839719 42839759 -107943794 + (TG)n Simple_repeat Simple_repeat 1 40 0 369 269 29 0 chr11 42839794 42839898 -107943655 + L3 LINE CR1 1363 1469 -108 22 94 0 0 chr11 42840061 42840125 -107943428 + AT_rich Low_complexity Low_complexity 1 64 0 353 298 221 34 chr11 42841058 42841167 -107942386 + L2 LINE L2 2743 2830 -483 1784 104 22 108 chr11 42841167 42841483 -107942070 - AluYb8 SINE Alu -16 302 14 353 298 221 34 chr11 42841483 42841864 -107941689 + L2 LINE L2 2830 3309 -4 557 320 90 8 chr11 42842092 42842326 -107941227 + MIR SINE MIR 6 258 -4 238 232 58 29 chr11 42842721 42842790 -107940763 + MIR SINE MIR 83 153 -109 301 206 32 0 chr11 42843091 42843154 -107940399 - MIR SINE MIR -12 250 186 312 259 27 54 chr11 42843257 42843369 -107940184 + MIR SINE MIR 67 175 -87 275 65 22 0 chr11 42843418 42843464 -107940089 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 484 147 14 140 chr11 42843487 42843630 -107939923 - MER20 DNA MER1_type -45 174 50 305 291 48 32 chr11 42843982 42844171 -107939382 + L2 LINE L2 3114 3305 -8 940 179 17 0 chr11 42844840 42845013 -107938540 + MLT1D LTR MaLR 21 196 -309 413 318 80 42 chr11 42845089 42845328 -107938225 + MLT1K LTR MaLR 269 516 -72 843 185 0 23 chr11 42845345 42845518 -107938035 - MLT-int LTR MaLR -1461 274 106 * 897 206 21 60 chr11 42845513 42845878 -107937675 - L1MB7 LINE L1 -80 6103 5769 1682 178 21 3 chr11 42845947 42846234 -107937319 - AluJb SINE Alu -16 296 5 215 288 93 51 chr11 42846806 42846924 -107936629 + L2 LINE L2 3145 3267 -5 281 221 29 15 chr11 42847026 42847094 -107936459 - MIR SINE MIR -5 257 189 188 343 60 0 chr11 42847793 42847860 -107935693 + L2 LINE L2 3202 3272 0 2375 100 0 0 chr11 42848096 42848396 -107935157 + AluSc SINE Alu 1 300 -9 244 342 50 25 chr11 42848724 42848844 -107934709 + MIR SINE MIR 36 158 -104 1950 193 25 50 chr11 42849738 42850031 -107933522 + L1MA5A LINE L1 4769 5043 -1103 2309 77 10 29 chr11 42850031 42850344 -107933209 - AluY SINE Alu -4 307 1 1950 193 25 50 chr11 42850344 42850605 -107932948 + L1MA5A LINE L1 5043 5309 -837 * 5177 150 26 10 chr11 42850598 42851614 -107931939 + L1MA5A LINE L1 5263 6295 -2 275 316 101 43 chr11 42852061 42852200 -107931353 - MIR SINE MIR -108 154 8 596 278 19 42 chr11 42853986 42854198 -107929355 - MIR SINE MIR -2 260 54 189 352 99 28 chr11 42854254 42854436 -107929117 + MIR SINE MIR 20 214 -48 543 53 0 0 chr11 42855405 42855480 -107928073 + (TATG)n Simple_repeat Simple_repeat 2 76 0 570 67 0 0 chr11 42855519 42855594 -107927959 + (TCTA)n Simple_repeat Simple_repeat 3 77 0 1143 281 36 64 chr11 42855636 42855935 -107927618 + L2 LINE L2 2827 3108 -205 965 219 0 28 chr11 42855935 42856150 -107927403 - MER3 DNA MER1_type 0 209 1 1143 281 36 64 chr11 42856150 42856351 -107927202 + L2 LINE L2 3108 3313 0 1281 246 30 41 chr11 42856379 42856847 -107926706 + L1MA9 LINE L1 5810 6272 -40 304 263 19 88 chr11 42857516 42857676 -107925877 - L1ME4a LINE L1 -8 6113 5965 2022 117 0 7 chr11 42857689 42857971 -107925582 - AluSx SINE Alu -1 311 32 1882 175 68 32 chr11 42858398 42858839 -107924714 + LTR2B LTR ERV1 34 490 0 214 354 217 0 chr11 42858893 42859068 -107924485 - MIR SINE MIR -36 226 14 291 353 20 50 chr11 42861333 42861534 -107922019 + MIR SINE MIR 20 214 -48 21 0 0 0 chr11 42862135 42862156 -107921397 + AT_rich Low_complexity Low_complexity 1 21 0 2395 92 0 6 chr11 42862431 42862745 -107920808 - AluSx SINE Alu 0 312 1 531 307 27 36 chr11 42862825 42863050 -107920503 - MIR SINE MIR -30 232 10 199 325 70 53 chr11 42863303 42863417 -107920136 - L3b LINE CR1 -243 1340 1225 301 296 78 42 chr11 42863469 42863611 -107919942 + MIR3 SINE MIR 26 172 -36 22 0 0 0 chr11 42864652 42864674 -107918879 + AT_rich Low_complexity Low_complexity 1 22 0 203 297 209 34 chr11 42864750 42864898 -107918655 - MIR SINE MIR -60 202 29 2208 121 0 0 chr11 42866110 42866399 -107917154 - AluSx SINE Alu -23 289 1 262 368 33 53 chr11 42867276 42867613 -107915940 - L2 LINE L2 -800 2514 2185 180 403 56 0 chr11 42867767 42867839 -107915714 + L2 LINE L2 3104 3179 -93 634 221 0 22 chr11 42867912 42868048 -107915505 + FLAM_A SINE Alu 1 133 0 228 231 26 13 chr11 42868217 42868295 -107915258 + (TA)n Simple_repeat Simple_repeat 1 79 0 341 208 160 0 chr11 42868348 42868454 -107915099 - MIR SINE MIR -10 252 130 503 81 0 0 chr11 42868686 42868760 -107914793 - L1PA11 LINE L1 -1 6173 6100 2156 116 3 0 chr11 42868840 42869132 -107914421 - AluSx SINE Alu -19 293 1 373 394 110 13 chr11 42869644 42870062 -107913491 + L2 LINE L2 2594 3053 -260 686 319 28 8 chr11 42870709 42870960 -107912593 - MIR SINE MIR 0 262 7 479 321 132 0 chr11 42871046 42871236 -107912317 - MIR SINE MIR -34 228 14 471 261 50 83 chr11 42871278 42871326 -107912227 - MER20 DNA MER1_type -8 211 163 1658 189 0 7 chr11 42871326 42871612 -107911941 + AluJb SINE Alu 14 297 -15 471 261 50 83 chr11 42871612 42871781 -107911772 - MER20 DNA MER1_type -56 163 1 264 318 45 18 chr11 42872039 42872149 -107911404 + MIR SINE MIR 149 261 -1 208 143 0 0 chr11 42872697 42872732 -107910821 + (TTTTTA)n Simple_repeat Simple_repeat 5 39 0 308 287 83 87 chr11 42873289 42873703 -107909850 + MLT1I LTR MaLR 31 402 -7 257 371 91 17 chr11 42874180 42874412 -107909141 + MIR SINE MIR 8 256 -6 370 165 35 12 chr11 42876749 42876834 -107906719 + MER5A DNA MER1_type 27 113 -76 24 0 0 0 chr11 42877619 42877643 -107905910 + AT_rich Low_complexity Low_complexity 1 24 0 1267 188 4 55 chr11 42877937 42878209 -107905344 + AluJo SINE Alu 26 283 -29 213 39 0 0 chr11 42878212 42878238 -107905315 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 205 317 38 98 chr11 42878244 42878427 -107905126 - MIR3 SINE MIR -14 194 23 * 399 216 60 17 chr11 42878362 42878478 -107905075 + MIR3 SINE MIR 67 187 -21 307 252 31 119 chr11 42880129 42880355 -107903198 - MIR3 SINE MIR -8 254 49 193 241 52 35 chr11 42880354 42880412 -107903141 - L2 LINE L2 0 3313 3255 * 30 27 0 0 chr11 42880445 42880482 -107903071 + AT_rich Low_complexity Low_complexity 1 37 0 1932 138 3 35 chr11 42880514 42880826 -107902727 - AluSx SINE Alu -10 302 1 1141 213 165 51 chr11 42881023 42881576 -107901977 + LTR48B LTR ERV1 1 784 -3 331 333 88 6 chr11 42882499 42882658 -107900895 + MIR SINE MIR 77 248 -14 25 31 0 0 chr11 42882665 42882697 -107900856 + AT_rich Low_complexity Low_complexity 1 32 0 2304 106 0 3 chr11 42882799 42883100 -107900453 - AluSq SINE Alu -13 300 1 21 36 0 0 chr11 42883940 42883968 -107899585 + AT_rich Low_complexity Low_complexity 1 28 0 322 294 91 7 chr11 42884306 42884449 -107899104 - MIR SINE MIR -87 175 21 195 362 40 53 chr11 42884931 42885083 -107898470 + L2 LINE L2 2946 3095 -177 544 225 50 0 chr11 42885154 42885274 -107898279 - MER20 DNA MER1_type -3 216 91 1269 199 115 0 chr11 42885280 42885541 -107898012 + AluJo SINE Alu 6 296 -16 251 216 193 68 chr11 42885542 42885568 -107897985 - MER20 DNA MER1_type -120 99 78 619 129 24 8 chr11 42885568 42885692 -107897861 + L1MA4 LINE L1 6170 6295 -5 251 216 193 68 chr11 42885692 42885753 -107897800 - MER20 DNA MER1_type -141 78 1 2184 103 7 3 chr11 42885882 42886182 -107897371 + AluSq SINE Alu 1 301 -12 183 186 14 29 chr11 42886382 42886452 -107897101 + (TA)n Simple_repeat Simple_repeat 2 70 0 3322 123 15 56 chr11 42886744 42887284 -107896269 + LTR24B LTR ERV1 1 516 -60 2054 130 3 0 chr11 42887284 42887569 -107895984 + AluSx SINE Alu 1 286 -26 3322 123 15 56 chr11 42887569 42887621 -107895932 + LTR24B LTR ERV1 516 569 -7 391 288 34 0 chr11 42888999 42889145 -107894408 + (CA)n Simple_repeat Simple_repeat 2 152 0 183 205 0 0 chr11 42889151 42889190 -107894363 + (CATA)n Simple_repeat Simple_repeat 4 42 0 445 288 50 6 chr11 42890235 42890395 -107893158 + MIR SINE MIR 40 206 -56 496 276 41 18 chr11 42890528 42890698 -107892855 + MIR SINE MIR 40 213 -49 746 311 51 36 chr11 42891478 42891627 -107891926 - L2 LINE L2 0 3313 3168 1544 186 43 17 chr11 42891627 42891928 -107891625 - AluJo SINE Alu -3 309 1 746 311 51 36 chr11 42891928 42892190 -107891363 - L2 LINE L2 -145 3168 2896 227 270 34 45 chr11 42892447 42892536 -107891017 + MIR SINE MIR 80 167 -95 263 343 66 0 chr11 42893118 42893255 -107890298 + MIR SINE MIR 85 230 -32 216 200 0 0 chr11 42893381 42893431 -107890122 + (TAAA)n Simple_repeat Simple_repeat 4 53 0 485 296 87 27 chr11 42894326 42894738 -107888815 + MLT1L LTR MaLR 83 545 -70 567 283 44 17 chr11 42895812 42895992 -107887561 - MIR SINE MIR -60 202 18 5311 24 0 0 chr11 42896005 42896644 -107886909 - L1PA3 LINE L1 -760 5386 4748 6454 20 0 5 chr11 42896644 42897398 -107886155 + L1PA3 LINE L1 5404 6155 0 1569 182 10 32 chr11 42897707 42898015 -107885538 - AluJo SINE Alu -11 301 1 6767 67 3 4 chr11 42898544 42899822 -107883731 + L1PA7 LINE L1 4869 6154 0 203 261 216 45 chr11 42900019 42900195 -107883358 + MIR SINE MIR 3 208 -54 695 200 0 0 chr11 42900366 42900481 -107883072 - FLAM_A SINE Alu -18 115 1 302 222 16 0 chr11 42900919 42900982 -107882571 + MIR SINE MIR 197 260 -2 221 210 0 81 chr11 42900988 42901050 -107882503 - MIR SINE MIR -186 76 20 1752 166 6 16 chr11 42902844 42903158 -107880395 + AluJb SINE Alu 2 312 0 267 224 20 0 chr11 42903169 42903218 -107880335 + AluJ/monomer SINE Alu 4 53 -250 610 164 0 0 chr11 42903219 42903323 -107880230 + AluJb SINE Alu 208 311 -1 326 359 58 6 chr11 42903526 42903682 -107879871 - MIR SINE MIR -77 185 22 249 57 0 0 chr11 42903765 42903800 -107879753 + (CCCA)n Simple_repeat Simple_repeat 3 37 0 2393 72 0 0 chr11 42904185 42904478 -107879075 - AluY SINE Alu -18 293 1 295 289 77 45 chr11 42905563 42905719 -107877834 + MER5B DNA MER1_type 16 176 -2 301 266 147 0 chr11 42906122 42906231 -107877322 - MIR SINE MIR 0 262 138 1922 191 13 18 chr11 42907015 42907407 -107876146 - MLT1B LTR MaLR 0 390 1 36 0 0 0 chr11 42911557 42911593 -107871960 + AT_rich Low_complexity Low_complexity 1 36 0 865 227 11 5 chr11 42912093 42912278 -107871275 + MER5A DNA MER1_type 3 188 -1 251 333 60 17 chr11 42912422 42912539 -107871014 - L2 LINE L2 -212 3060 2939 263 207 81 72 chr11 42912832 42912943 -107870610 + MIR SINE MIR 96 207 -55 2193 67 6 80 chr11 42914246 42914573 -107868980 - AluY SINE Alu -8 303 1 37 23 0 0 chr11 42914583 42914627 -107868926 + AT_rich Low_complexity Low_complexity 1 44 0 4728 174 21 41 chr11 42914640 42914976 -107868577 - L1MA10 LINE L1 0 6334 5993 2550 55 0 0 chr11 42914976 42915284 -107868269 - AluY SINE Alu -3 308 1 4728 174 21 41 chr11 42915284 42915978 -107867575 - L1MA10 LINE L1 -341 5993 5324 1191 185 24 0 chr11 42915979 42916190 -107867363 - AluJo SINE Alu -10 302 87 297 0 0 0 chr11 42916212 42916245 -107867308 + (TTA)n Simple_repeat Simple_repeat 2 34 0 976 218 0 0 chr11 42916245 42916461 -107867092 - L1MA10 LINE L1 -849 5297 5082 453 301 144 22 chr11 42916643 42916872 -107866681 - MIR SINE MIR 0 262 6 1435 134 7 75 chr11 42917719 42917876 -107865677 + L1PA16 LINE L1 5887 6016 -150 2084 106 0 35 chr11 42917876 42918217 -107865336 + AluSc SINE Alu 1 309 0 1435 134 7 75 chr11 42918217 42918351 -107865202 + L1PA16 LINE L1 6016 6158 -8 26 50 0 0 chr11 42918363 42918403 -107865150 + AT_rich Low_complexity Low_complexity 1 40 0 259 365 38 31 chr11 42918625 42918784 -107864769 + MIR SINE MIR 36 195 -67 231 304 108 0 chr11 42921802 42921904 -107861649 - MIR SINE MIR -106 156 44 340 353 38 38 chr11 42922809 42923047 -107860506 - MIR SINE MIR 0 262 25 1889 132 7 0 chr11 42923167 42923454 -107860099 - AluSg SINE Alu 0 310 22 463 359 48 19 chr11 42923715 42923921 -107859632 - MIR SINE MIR -38 224 13 3568 149 17 43 chr11 42924091 42924811 -107858742 + L1MC2 LINE L1 5643 6343 -1 22 35 0 0 chr11 42924811 42924840 -107858713 + AT_rich Low_complexity Low_complexity 1 29 0 188 258 161 0 chr11 42925054 42925116 -107858437 - L2 LINE L2 -12 3301 3230 205 267 0 0 chr11 42927958 42928003 -107855550 - MER5A DNA MER1_type -22 167 123 1874 162 3 0 chr11 42928004 42928288 -107855265 + AluSx SINE Alu 4 288 -24 217 354 12 0 chr11 42928291 42928373 -107855180 - MER5B DNA MER1_type -42 136 54 24 0 0 0 chr11 42930100 42930124 -107853429 + AT_rich Low_complexity Low_complexity 1 24 0 548 309 129 11 chr11 42930124 42930558 -107852995 + L1ME4a LINE L1 5485 5969 -152 277 353 98 0 chr11 42930594 42930767 -107852786 + L2 LINE L2 3113 3302 -11 271 284 85 50 chr11 42931158 42931359 -107852194 - L1ME LINE L1 -297 5824 5617 4693 27 0 0 chr11 42931442 42931991 -107851562 + L1PA3 LINE L1 5606 6154 -1 274 403 12 21 chr11 42932110 42932353 -107851200 + L3 LINE CR1 1168 1408 -169 560 403 28 41 chr11 42932877 42933336 -107850217 + L2 LINE L2 2817 3269 -3 22 0 0 0 chr11 42933454 42933476 -107850077 + AT_rich Low_complexity Low_complexity 1 22 0 252 86 0 0 chr11 42933525 42933560 -107849993 + (TC)n Simple_repeat Simple_repeat 2 36 0 181 233 250 26 chr11 42935067 42935183 -107848370 - MIR SINE MIR -55 207 66 210 293 10 50 chr11 42935402 42935501 -107848052 + MIR3 SINE MIR 113 207 -1 205 293 101 20 chr11 42936033 42936132 -107847421 - MIR3 SINE MIR -1 207 101 573 279 127 22 chr11 42936400 42936676 -107846877 + MLT1H LTR MaLR 218 522 -27 18640 110 9 18 chr11 42937074 42938669 -107844884 + L1PA7 LINE L1 1027 2635 -3519 1919 103 65 14 chr11 42938669 42938960 -107844593 + AluY SINE Alu 1 306 -5 18640 110 9 18 chr11 42938960 42942268 -107841285 + L1PA7 LINE L1 2635 6154 0 938 199 112 0 chr11 42942565 42942761 -107840792 - MER20 DNA MER1_type 0 219 2 271 311 16 82 chr11 42942999 42943182 -107840371 + MLT1J LTR MaLR 291 461 -50 295 388 25 72 chr11 42943395 42943715 -107839838 + L2 LINE L2 2968 3272 0 457 209 95 27 chr11 42943721 42943869 -107839684 + L1ME4a LINE L1 5960 6117 -4 356 198 189 0 chr11 42945807 42945918 -107837635 + MER58 DNA MER1_type 45 176 -165 4511 161 51 9 chr11 42945918 42947030 -107836523 + L1MA8 LINE L1 4459 5613 -678 675 135 71 0 chr11 42947030 42947169 -107836384 + L1MA8 LINE L1 6139 6289 -2 738 163 8 0 chr11 42947180 42947303 -107836250 + MER58 DNA MER1_type 151 274 -2146 1156 214 30 15 chr11 42947354 42947681 -107835872 - MER33 DNA MER1_type -4 320 1 424 345 46 21 chr11 42947931 42948169 -107835384 - L3 LINE CR1 -492 1085 842 444 297 34 14 chr11 42949026 42949174 -107834379 - MIR SINE MIR -26 236 86 478 363 26 9 chr11 42949861 42950087 -107833466 + MIR SINE MIR 1 230 -32 4156 236 37 9 chr11 42952410 42953420 -107830133 + MER45B DNA AcHobo 2 1039 -1 344 279 48 113 chr11 42953443 42953672 -107829881 - L2 LINE L2 -199 3073 2860 282 345 113 11 chr11 42953783 42953960 -107829593 - MIR SINE MIR -1 261 67 222 340 146 19 chr11 42953990 42954082 -107829471 + L2 LINE L2 3149 3257 -15 186 43 0 0 chr11 42954082 42954105 -107829448 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 329 316 199 0 chr11 42954245 42954416 -107829137 + MIR3 SINE MIR 4 208 0 1792 142 0 60 chr11 42954501 42954832 -107828721 - AluSx SINE Alu -1 311 1 189 147 0 0 chr11 42954872 42954906 -107828647 + (TTCA)n Simple_repeat Simple_repeat 2 35 0 6372 82 5 15 chr11 42955341 42956328 -107827225 + L1PA10 LINE L1 5197 6167 -1 213 298 0 0 chr11 42956995 42957052 -107826501 + (CAT)n Simple_repeat Simple_repeat 3 59 0 1886 209 111 89 chr11 42958914 42959008 -107824545 - MER63C DNA MER1_type -130 931 841 195 69 0 0 chr11 42959008 42959037 -107824516 + (TTAAA)n Simple_repeat Simple_repeat 3 31 0 1886 209 111 89 chr11 42959037 42959422 -107824131 - MER63C DNA MER1_type -220 841 466 2731 16 0 0 chr11 42959422 42959729 -107823824 - AluY SINE Alu -4 307 1 1886 209 111 89 chr11 42959729 42960118 -107823435 - MER63C DNA MER1_type -595 466 11 24 32 0 0 chr11 42960590 42960621 -107822932 + AT_rich Low_complexity Low_complexity 1 31 0 326 331 98 0 chr11 42960629 42960792 -107822761 + L1MC4a LINE L1 5682 5860 -1948 203 294 43 87 chr11 42962001 42962093 -107821460 - L2 LINE L2 0 3272 3185 2221 110 0 0 chr11 42962098 42962398 -107821155 - AluY SINE Alu -11 300 1 1097 289 94 34 chr11 42962400 42962868 -107820685 + L2 LINE L2 2818 3313 0 2022 137 0 13 chr11 42963309 42963608 -107819945 + AluSx SINE Alu 3 297 -15 1862 167 7 7 chr11 42963631 42963925 -107819628 + AluJb SINE Alu 1 294 -18 216 0 0 0 chr11 42963937 42963961 -107819592 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 23 33 0 0 chr11 42964222 42964252 -107819301 + AT_rich Low_complexity Low_complexity 1 30 0 376 288 101 7 chr11 42964404 42964543 -107819010 + MIR3 SINE MIR 51 202 -6 1681 116 0 0 chr11 42965235 42965459 -107818094 - AluSq SINE Alu -89 224 1 2895 15 0 0 chr11 42966743 42967077 -107816476 + L1PA2 LINE L1 5822 6155 0 21 0 0 0 chr11 42967101 42967122 -107816431 + AT_rich Low_complexity Low_complexity 1 21 0 1691 100 129 0 chr11 42967138 42967379 -107816174 + AluSg1 SINE Alu 26 297 -12 280 336 74 32 chr11 42967634 42967851 -107815702 - MIR SINE MIR -31 231 6 256 286 11 79 chr11 42969714 42969892 -107813661 - L2 LINE L2 -1217 2097 1932 198 265 129 45 chr11 42970112 42970244 -107813309 + MIR SINE MIR 119 261 -1 466 312 0 7 chr11 42971531 42971669 -107811884 - L2 LINE L2 -520 2794 2658 22 0 0 0 chr11 42972204 42972226 -107811327 + AT_rich Low_complexity Low_complexity 1 22 0 823 300 40 77 chr11 42973259 42973354 -107810199 + L2 LINE L2 2657 2754 -559 2153 127 0 0 chr11 42973354 42973662 -107809891 - AluSx SINE Alu -4 308 1 2176 116 20 0 chr11 42973667 42973968 -107809585 - AluSc SINE Alu -2 307 1 823 300 40 77 chr11 42973968 42974556 -107808997 + L2 LINE L2 2758 3313 0 952 107 8 0 chr11 42974885 42975016 -107808537 - AluY SINE Alu -179 132 1 254 315 137 30 chr11 42975166 42975226 -107808327 - MIR SINE MIR -5 257 205 2256 116 0 0 chr11 42975226 42975528 -107808025 - AluSg SINE Alu -8 302 1 254 315 137 30 chr11 42975528 42975664 -107807889 - MIR SINE MIR -57 205 40 918 267 0 4 chr11 42975670 42975895 -107807658 + MER58A DNA MER1_type 1 224 0 618 219 8 0 chr11 42975896 42976019 -107807534 + L2 LINE L2 3190 3313 0 186 43 0 0 chr11 42976072 42976095 -107807458 + (T)n Simple_repeat Simple_repeat 1 23 0 221 404 41 20 chr11 42977274 42977420 -107806133 + MIR3 SINE MIR 16 164 -44 649 277 85 21 chr11 42978639 42978874 -107804679 - MIR SINE MIR 0 262 13 207 157 0 0 chr11 42978883 42978934 -107804619 + T-rich Low_complexity Low_complexity 1 51 0 344 0 0 0 chr11 42978941 42978984 -107804569 - L1PA4 LINE L1 -3 6152 6110 188 250 23 0 chr11 42980332 42980376 -107803177 + L3 LINE CR1 565 609 -968 1897 147 29 47 chr11 42981060 42981442 -107802111 - THE1C LTR MaLR 0 375 1 2002 122 31 3 chr11 42982301 42982587 -107800966 - AluSg SINE Alu -16 294 1 6866 62 42 0 chr11 42982740 42983720 -107799833 - L1PA7 LINE L1 -8 6146 5154 203 133 22 0 chr11 42983798 42983843 -107799710 + A-rich Low_complexity Low_complexity 3 48 0 286 299 11 11 chr11 42983970 42984057 -107799496 - MIR3 SINE MIR -36 172 86 26 30 0 0 chr11 42984904 42984937 -107798616 + AT_rich Low_complexity Low_complexity 1 33 0 319 368 27 0 chr11 42985207 42985430 -107798123 + L1M4 LINE L1 3073 3301 -2845 2309 109 0 3 chr11 42985470 42985781 -107797772 - AluSg SINE Alu 0 310 1 378 221 29 0 chr11 42985794 42985898 -107797655 + L1M4 LINE L1 3343 3449 -2697 2076 100 0 27 chr11 42985898 42986198 -107797355 + L1P LINE L1 2 293 -5853 271 43 109 0 chr11 42986186 42986232 -107797321 + L1P LINE L1 966 1016 -5130 * 7566 31 0 0 chr11 42986232 42987285 -107796268 + L1PA4 LINE L1 5097 6149 -6 275 349 68 0 chr11 42987289 42987435 -107796118 + MIR SINE MIR 51 206 -56 1013 208 22 90 chr11 42987445 42987811 -107795742 + L1M4 LINE L1 3439 3779 -2367 879 237 51 0 chr11 42987826 42988062 -107795491 + L1MB7 LINE L1 5921 6168 -16 262 309 83 22 chr11 42990545 42990775 -107792778 + HAL1 LINE L1 1115 1358 -1149 217 191 0 44 chr11 42990905 42990973 -107792580 + GA-rich Low_complexity Low_complexity 2 66 0 216 277 0 0 chr11 42990983 42991030 -107792523 + polypurine Low_complexity Low_complexity 4 50 0 * 221 171 0 0 chr11 42990996 42991031 -107792522 + A-rich Low_complexity Low_complexity 1 35 0 228 67 0 0 chr11 42991193 42991223 -107792330 + (A)n Simple_repeat Simple_repeat 1 30 0 24 0 0 0 chr11 42991323 42991347 -107792206 + AT_rich Low_complexity Low_complexity 1 24 0 538 336 57 9 chr11 42991960 42992189 -107791364 + MLT1J LTR MaLR 5 244 -267 212 250 42 0 chr11 42993069 42993141 -107790412 + (CATA)n Simple_repeat Simple_repeat 2 76 0 217 309 0 0 chr11 42994294 42994349 -107789204 - L2 LINE L2 -17 3296 3242 276 336 106 0 chr11 42994896 42995009 -107788544 + L2 LINE L2 3148 3272 0 716 273 34 19 chr11 42995520 42995729 -107787824 + MIR SINE MIR 38 249 -13 213 147 0 59 chr11 42995852 42995920 -107787633 + (TTATA)n Simple_repeat Simple_repeat 3 66 0 186 43 0 0 chr11 42996685 42996708 -107786845 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1391 226 26 57 chr11 42996958 42997379 -107786174 - MLT2D LTR ERVL -6 408 1 8478 100 3 1 chr11 42997890 42999032 -107784521 + L1P3 LINE L1 8 1152 -5309 212 277 57 63 chr11 42999689 42999848 -107783705 - L2 LINE L2 -8 3305 3148 351 0 0 0 chr11 43000511 43000550 -107783003 + (TG)n Simple_repeat Simple_repeat 1 39 0 330 275 106 0 chr11 43000902 43001044 -107782509 - MER103 DNA DNA 0 166 10 7058 185 34 5 chr11 43001155 43003630 -107779923 + L1PB4 LINE L1 3607 6155 -1 272 385 73 5 chr11 43003699 43003891 -107779662 - MIR SINE MIR -10 252 48 2232 109 7 3 chr11 43004484 43004786 -107778767 - AluSg SINE Alu -7 303 1 2163 144 19 30 chr11 43005954 43006322 -107777231 + THE1B LTR MaLR 1 364 0 879 53 9 0 chr11 43006693 43006806 -107776747 - L1PA6 LINE L1 -7 6147 6034 26 0 0 0 chr11 43007173 43007199 -107776354 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr11 43007357 43007379 -107776174 + AT_rich Low_complexity Low_complexity 1 22 0 250 355 41 0 chr11 43007444 43007565 -107775988 - L2 LINE L2 -6 3307 3182 225 0 0 0 chr11 43008491 43008516 -107775037 + (TAAAAA)n Simple_repeat Simple_repeat 4 28 0 1685 116 35 0 chr11 43008525 43008784 -107774769 + L1PA15 LINE L1 5896 6163 -2 1571 200 17 0 chr11 43008866 43009211 -107774342 + L1MA9 LINE L1 5785 6135 -177 207 245 53 21 chr11 43010053 43010147 -107773406 + MIR SINE MIR 120 216 -46 1793 181 0 7 chr11 43010599 43010909 -107772644 - AluJb SINE Alu -1 311 4 251 294 51 51 chr11 43010919 43011096 -107772457 + L1MCc LINE L1 124 300 -6123 312 281 129 7 chr11 43011869 43012008 -107771545 + L1MC4 LINE L1 6604 6759 -1283 860 295 101 48 chr11 43012038 43012730 -107770823 + L1MC4a LINE L1 5326 6054 -1754 263 261 145 0 chr11 43013094 43013163 -107770390 + L1MD3 LINE L1 6668 6746 -1249 461 283 26 7 chr11 43013181 43013333 -107770220 + L1MC4 LINE L1 6856 7010 -1032 558 284 161 81 chr11 43013557 43013753 -107769800 + L1MC4 LINE L1 7099 7278 -764 3767 94 22 0 chr11 43013753 43014295 -107769258 + L1PA13 LINE L1 5610 6163 0 558 284 161 81 chr11 43014295 43014826 -107768727 + L1MC4 LINE L1 7278 7884 -158 327 163 100 0 chr11 43015334 43015414 -107768139 + MLT1J LTR MaLR 416 503 -8 583 257 12 46 chr11 43015490 43015683 -107767870 + MLT1D LTR MaLR 4 187 -350 240 247 53 106 chr11 43016008 43016178 -107767375 - MIR SINE MIR -30 232 72 213 305 38 57 chr11 43017067 43017172 -107766381 + MIR SINE MIR 3 105 -157 189 362 43 0 chr11 43017417 43017511 -107766042 + L2 LINE L2 2950 3047 -225 313 270 139 43 chr11 43018006 43018121 -107765432 - L2 LINE L2 0 3272 3147 222 217 43 0 chr11 43018209 43018255 -107765298 + L2 LINE L2 3261 3308 -5 1818 158 7 7 chr11 43019132 43019416 -107764137 + AluSq SINE Alu 1 284 -29 2297 245 85 5 chr11 43019452 43020055 -107763498 - MLT1E1 LTR MaLR -3 651 1 251 340 65 35 chr11 43020946 43021146 -107762407 + MLT1K LTR MaLR 198 403 -185 229 267 22 7 chr11 43021146 43021281 -107762272 + (TA)n Simple_repeat Simple_repeat 1 137 0 251 314 29 57 chr11 43021412 43021552 -107762001 + MLT1K LTR MaLR 446 581 -7 859 344 74 0 chr11 43021960 43022312 -107761241 + LTR33 LTR ERVL 2 379 -142 182 320 204 17 chr11 43022978 43023150 -107760403 + MIR SINE MIR 19 222 -40 816 200 12 0 chr11 43023950 43024115 -107759438 - AluSg/x SINE Alu 0 312 146 21 0 0 0 chr11 43024284 43024305 -107759248 + GC_rich Low_complexity Low_complexity 1 21 0 2155 110 13 7 chr11 43024919 43025229 -107758324 - AluSx SINE Alu 0 312 1 756 159 36 0 chr11 43025398 43025536 -107758017 - L1MA9 LINE L1 0 6312 6170 28 0 0 0 chr11 43025607 43025635 -107757918 + AT_rich Low_complexity Low_complexity 1 28 0 2166 98 14 0 chr11 43026227 43026512 -107757041 + AluSq SINE Alu 5 293 -20 261 308 56 56 chr11 43027271 43027414 -107756139 + MIR3 SINE MIR 38 180 -28 248 278 96 17 chr11 43027670 43027785 -107755768 + MIR SINE MIR 89 212 -50 240 219 16 16 chr11 43028709 43028773 -107754780 + (ATG)n Simple_repeat Simple_repeat 2 65 0 277 330 168 11 chr11 43029199 43029378 -107754175 + MIR SINE MIR 26 232 -30 369 0 0 0 chr11 43029378 43029393 -107754160 + (CA)n Simple_repeat Simple_repeat 1 56 0 369 0 0 0 chr11 43029393 43029434 -107754119 + (CA)n Simple_repeat Simple_repeat 2 42 0 22 0 0 0 chr11 43029485 43029507 -107754046 + AT_rich Low_complexity Low_complexity 1 22 0 1962 157 11 14 chr11 43029512 43029868 -107753685 - THE1A LTR MaLR 0 355 1 11456 101 1 8 chr11 43029868 43031458 -107752095 - THE1A-int LTR MaLR 0 1580 1 1999 160 14 6 chr11 43031458 43031808 -107751745 - THE1A LTR MaLR 0 355 3 391 247 12 0 chr11 43032404 43032485 -107751068 + L2 LINE L2 3232 3313 0 207 170 0 0 chr11 43033315 43033362 -107750191 + (TGAA)n Simple_repeat Simple_repeat 3 49 0 368 329 104 26 chr11 43036181 43036611 -107746942 + L1ME LINE L1 5057 5529 -773 1977 129 3 57 chr11 43036837 43037155 -107746398 - AluSx SINE Alu -11 301 1 311 256 207 15 chr11 43038075 43038278 -107745275 + L1ME LINE L1 5541 5782 -339 41 0 0 0 chr11 43038577 43038618 -107744935 + AT_rich Low_complexity Low_complexity 1 41 0 376 119 0 24 chr11 43039254 43039338 -107744215 + (TA)n Simple_repeat Simple_repeat 2 83 0 1067 159 5 15 chr11 43041310 43041505 -107742048 + AluSg/x SINE Alu 120 312 0 237 226 48 48 chr11 43041878 43041940 -107741613 - MLT1F LTR MaLR -480 62 1 2536 68 0 0 chr11 43042067 43042378 -107741175 + AluY SINE Alu 1 311 0 207 329 44 44 chr11 43042427 43042564 -107740989 - L2 LINE L2 -206 3066 2930 279 276 65 24 chr11 43042645 43042768 -107740785 - L2 LINE L2 -533 2781 2654 321 339 91 24 chr11 43043245 43043409 -107740144 + MIR SINE MIR 47 221 -41 576 346 21 4 chr11 43043409 43043643 -107739910 + MIR SINE MIR 2 239 -23 21 0 0 0 chr11 43043719 43043740 -107739813 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr11 43045168 43045198 -107738355 + AT_rich Low_complexity Low_complexity 1 30 0 23 54 0 0 chr11 43045338 43045375 -107738178 + AT_rich Low_complexity Low_complexity 1 37 0 6481 68 24 0 chr11 43046744 43048346 -107735207 + L1PA7 LINE L1 4535 6148 -6 1160 139 19 14 chr11 43048539 43048754 -107734799 - Tigger1 DNA MER2_type -1560 858 643 1047 131 0 0 chr11 43048750 43048910 -107734643 + Tigger1 DNA MER2_type 1509 1668 -750 * 2041 150 18 2 chr11 43048911 43049310 -107734243 + Tigger1 DNA MER2_type 863 1353 -1065 3371 184 46 0 chr11 43049315 43049928 -107733625 - Tigger1 DNA MER2_type -1777 641 1 211 151 0 38 chr11 43050533 43050586 -107732967 + (TTCA)n Simple_repeat Simple_repeat 1 51 0 2179 106 0 0 chr11 43050687 43051012 -107732541 + AluSc SINE Alu 1 325 0 1765 143 0 25 chr11 43051148 43051428 -107732125 - AluSx SINE Alu -39 273 1 246 30 0 0 chr11 43051429 43051462 -107732091 + L1MB3 LINE L1 6043 6075 -108 1126 119 12 6 chr11 43051462 43051630 -107731923 + THE1B LTR MaLR 1 169 -195 485 234 0 0 chr11 43051645 43051752 -107731801 + MER3 DNA MER1_type 62 168 -41 3090 215 44 7 chr11 43051752 43052571 -107730982 - L1MB3 LINE L1 -128 6055 5207 243 171 68 0 chr11 43052622 43052710 -107730843 + (TA)n Simple_repeat Simple_repeat 1 94 0 246 344 0 31 chr11 43053623 43053719 -107729834 + L2 LINE L2 3168 3260 -12 * 345 343 102 31 chr11 43053713 43054133 -107729420 - L2 LINE L2 -1 3312 2863 2211 112 0 0 chr11 43054157 43054452 -107729101 + AluY SINE Alu 1 295 -16 1700 256 64 74 chr11 43054587 43056289 -107727264 + L1ME3A LINE L1 4483 6168 -2 291 359 77 30 chr11 43056440 43056749 -107726804 - L2 LINE L2 -747 2567 2239 2067 118 17 0 chr11 43056749 43057038 -107726515 - AluSp SINE Alu -19 294 1 291 359 77 30 chr11 43057038 43057065 -107726488 - L2 LINE L2 -1075 2239 2215 4496 186 73 25 chr11 43057119 43058309 -107725244 + L1MA10 LINE L1 5086 6304 -30 473 343 22 19 chr11 43058344 43058612 -107724941 - L2 LINE L2 -1152 2162 1894 509 95 0 36 chr11 43058887 43058971 -107724582 + L1PA6 LINE L1 6067 6147 -7 34 24 0 0 chr11 43059197 43059238 -107724315 + AT_rich Low_complexity Low_complexity 1 41 0 251 313 34 41 chr11 43059427 43059574 -107723979 + MIR SINE MIR 117 262 0 298 343 152 14 chr11 43059850 43060060 -107723493 + MIR SINE MIR 17 255 -7 591 191 9 0 chr11 43060126 43060236 -107723317 - L1MC1 LINE L1 -12 6321 6211 528 365 28 8 chr11 43060964 43061219 -107722334 - MIR SINE MIR 0 262 3 23 0 0 0 chr11 43061370 43061393 -107722160 + AT_rich Low_complexity Low_complexity 1 23 0 1973 131 45 43 chr11 43061758 43062132 -107721421 - THE1C LTR MaLR 0 375 1 352 333 79 21 chr11 43062776 43062965 -107720588 + MIR SINE MIR 23 222 -40 373 302 138 5 chr11 43063040 43063229 -107720324 + MIR SINE MIR 49 262 0 352 242 311 11 chr11 43063419 43063609 -107719944 + MIR SINE MIR 8 254 -8 577 141 0 0 chr11 43063659 43063751 -107719802 - ALR/Alpha Satellite centromeric -23 149 58 290 356 17 0 chr11 43064940 43065055 -107718498 + L2 LINE L2 2728 2844 -470 638 234 23 79 chr11 43065055 43065179 -107718374 + MER5A DNA MER1_type 2 121 -68 2411 92 0 0 chr11 43065179 43065482 -107718071 - AluSc SINE Alu -6 303 1 638 234 23 79 chr11 43065482 43065543 -107718010 + MER5A DNA MER1_type 121 184 -5 893 291 39 70 chr11 43065561 43066043 -107717510 + L2 LINE L2 2846 3312 -1 447 253 129 35 chr11 43066249 43066451 -107717102 - MIR SINE MIR -37 225 5 296 250 25 12 chr11 43066894 43066974 -107716579 + MER5A DNA MER1_type 32 112 -77 597 228 95 13 chr11 43067042 43067200 -107716353 - MER5B DNA MER1_type -7 171 1 6042 46 10 15 chr11 43067251 43068029 -107715524 - L1PA5 LINE L1 -127 6027 5254 21 36 0 0 chr11 43068600 43068628 -107714925 + AT_rich Low_complexity Low_complexity 1 28 0 576 206 0 0 chr11 43070184 43070286 -107713267 - AluJo SINE Alu -24 288 187 * 660 179 0 0 chr11 43070285 43070397 -107713156 - AluJo SINE Alu -200 112 1 200 359 87 34 chr11 43070609 43070815 -107712738 + L2 LINE L2 3055 3271 -1 461 126 29 19 chr11 43070997 43071100 -107712453 + CT-rich Low_complexity Low_complexity 3 106 0 271 242 191 73 chr11 43071426 43071604 -107711949 - L1MEd LINE L1 -5396 723 525 189 370 58 7 chr11 43073993 43074131 -107709422 + L2 LINE L2 2945 3089 -224 231 213 64 0 chr11 43074242 43074289 -107709264 + L2 LINE L2 3258 3307 -6 22 0 0 0 chr11 43074412 43074434 -107709119 + AT_rich Low_complexity Low_complexity 1 22 0 699 35 0 0 chr11 43075048 43075134 -107708419 + (TTCC)n Simple_repeat Simple_repeat 4 89 0 285 302 183 18 chr11 43075353 43075522 -107708031 + MIR SINE MIR 66 262 0 255 294 0 15 chr11 43075540 43075608 -107707945 - MIR SINE MIR -116 146 80 277 291 170 24 chr11 43075749 43075914 -107707639 - MIR SINE MIR -70 192 4 718 304 63 51 chr11 43076861 43077193 -107706360 - L2 LINE L2 -7 3306 2971 961 221 4 33 chr11 43077200 43077607 -107705946 + MLT1B LTR MaLR 12 458 -9 225 255 147 39 chr11 43077610 43077712 -107705841 - L2 LINE L2 -348 2966 2854 231 276 76 38 chr11 43077866 43077971 -107705582 - MIR SINE MIR -82 126 18 335 407 26 5 chr11 43080132 43080321 -107703232 + MIR3 SINE MIR 10 202 -6 321 292 127 91 chr11 43080388 43080748 -107702805 + L2 LINE L2 2906 3283 -30 2164 199 0 14 chr11 43080748 43081166 -107702387 + MLT2D LTR ERVL 3 414 0 321 292 127 91 chr11 43081166 43081199 -107702354 + L2 LINE L2 3283 3313 0 276 319 60 17 chr11 43081220 43081336 -107702217 - MIR3 SINE MIR -76 132 12 2070 136 0 3 chr11 43081929 43082239 -107701314 + AluSx SINE Alu 1 309 -3 780 141 14 0 chr11 43082523 43082665 -107700888 - L1P4 LINE L1 -669 5497 5354 2275 196 33 33 chr11 43082823 43083201 -107700352 - L1 LINE L1 -1388 4758 4378 2454 17 66 0 chr11 43083201 43083488 -107700065 - AluY SINE Alu -5 306 1 2275 196 33 33 chr11 43083488 43083707 -107699846 - L1 LINE L1 -1767 4379 4161 1294 109 0 16 chr11 43084061 43084253 -107699300 + MER30B DNA MER1_type 2 190 0 24 32 0 0 chr11 43084399 43084430 -107699123 + AT_rich Low_complexity Low_complexity 1 31 0 225 303 0 123 chr11 43085327 43085482 -107698071 + MIR SINE MIR 5 140 -122 203 356 148 9 chr11 43085733 43085848 -107697705 + MIR SINE MIR 30 160 -102 13347 163 37 8 chr11 43086236 43088580 -107694973 - Tigger1 DNA MER2_type 0 2418 6 243 0 0 0 chr11 43088683 43088710 -107694843 + (TA)n Simple_repeat Simple_repeat 2 28 0 2329 42 0 0 chr11 43089224 43089507 -107694046 - L1PA5 LINE L1 -11 6143 5861 342 0 0 0 chr11 43089759 43089797 -107693756 + (TA)n Simple_repeat Simple_repeat 2 39 0 4458 97 6 28 chr11 43090878 43091364 -107692189 - L1PA14 LINE L1 -3 6158 5691 1681 175 7 7 chr11 43091364 43091667 -107691886 - AluSx SINE Alu -9 303 1 4458 97 6 28 chr11 43091667 43091883 -107691670 - L1PA14 LINE L1 -470 5691 5472 677 89 10 10 chr11 43091940 43092041 -107691512 - L1PA14 LINE L1 -694 5467 5367 300 70 0 0 chr11 43092609 43092652 -107690901 + (TG)n Simple_repeat Simple_repeat 2 44 0 317 331 15 15 chr11 43093002 43093138 -107690415 + MIR SINE MIR 66 201 -61 371 305 107 15 chr11 43093389 43093520 -107690033 + MIR3 SINE MIR 40 182 -26 2519 69 0 0 chr11 43093591 43093894 -107689659 - AluY SINE Alu -8 303 1 220 308 77 0 chr11 43094669 43094773 -107688780 - MIR SINE MIR -92 170 59 484 290 49 90 chr11 43094883 43095293 -107688260 + LTR16B LTR ERVL 64 456 -8 2673 322 40 31 chr11 43095394 43096743 -107686810 + HERV16 LTR ERVL 37 1397 -3599 469 321 16 16 chr11 43097233 43097426 -107686127 + HERV16 LTR ERVL 4787 4979 -17 473 332 46 40 chr11 43097576 43097925 -107685628 + LTR16B LTR ERVL 97 447 -17 207 0 0 0 chr11 43098269 43098292 -107685261 + (T)n Simple_repeat Simple_repeat 1 23 0 277 321 66 28 chr11 43098820 43098926 -107684627 - MIR SINE MIR -117 145 36 1513 254 54 44 chr11 43099367 43099900 -107683653 + MLT1F1 LTR MaLR 31 567 0 241 265 0 15 chr11 43100871 43100939 -107682614 + (TATATG)n Simple_repeat Simple_repeat 2 68 0 242 309 32 32 chr11 43100957 43101083 -107682470 + MIR SINE MIR 121 246 -16 21 36 0 0 chr11 43101158 43101186 -107682367 + AT_rich Low_complexity Low_complexity 1 28 0 216 226 32 0 chr11 43101362 43101455 -107682098 + (TA)n Simple_repeat Simple_repeat 2 97 0 303 271 90 45 chr11 43101458 43101635 -107681918 + L1ME4a LINE L1 5935 6119 -2 24 32 0 0 chr11 43102247 43102278 -107681275 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr11 43102673 43102695 -107680858 + AT_rich Low_complexity Low_complexity 1 22 0 265 341 7 58 chr11 43102827 43102965 -107680588 - MIR SINE MIR -60 148 18 197 362 19 71 chr11 43104902 43105112 -107678441 + L2 LINE L2 2892 3090 -182 207 323 0 0 chr11 43105189 43105251 -107678302 + L2 LINE L2 3210 3271 -1 269 284 102 40 chr11 43105283 43105459 -107678094 + MIR SINE MIR 76 262 0 838 229 5 10 chr11 43105993 43106198 -107677355 - MER115 DNA AcHobo 0 693 490 356 346 34 6 chr11 43106430 43106609 -107676944 - MER115 DNA AcHobo -502 191 8 394 284 0 11 chr11 43106911 43107006 -107676547 + MER81 DNA DNA 21 114 0 231 410 42 24 chr11 43108243 43108409 -107675144 + L2 LINE L2 3104 3272 0 522 209 36 0 chr11 43108862 43108972 -107674581 + MER94 DNA DNA 1 114 -20 767 201 28 0 chr11 43109052 43109196 -107674357 + MER20B DNA MER1_type 17 164 -55 2412 62 3 0 chr11 43109332 43109624 -107673929 - AluY SINE Alu -2 309 17 315 49 0 0 chr11 43109635 43109676 -107673877 + (T)n Simple_repeat Simple_repeat 1 41 0 26 0 0 0 chr11 43110168 43110194 -107673359 + AT_rich Low_complexity Low_complexity 1 26 0 25 0 0 0 chr11 43110266 43110291 -107673262 + AT_rich Low_complexity Low_complexity 1 25 0 451 270 13 63 chr11 43110775 43110934 -107672619 - MER63A DNA MER1_type 0 210 60 21 36 0 0 chr11 43111683 43111711 -107671842 + AT_rich Low_complexity Low_complexity 1 28 0 2363 73 0 7 chr11 43112228 43112531 -107671022 + AluY SINE Alu 1 301 -10 3682 277 43 26 chr11 43114407 43115519 -107668034 + L1MD1 LINE L1 13 1143 -5397 850 258 26 4 chr11 43115545 43115812 -107667741 + L1MD1 LINE L1 5328 5600 -940 3143 203 20 10 chr11 43115816 43116507 -107667046 + L1MD1 LINE L1 5938 6635 -1 208 121 0 0 chr11 43116791 43116824 -107666729 + (CA)n Simple_repeat Simple_repeat 2 34 0 569 243 97 113 chr11 43116834 43117642 -107665911 + LTR50 LTR ERVL 1 795 0 2256 87 0 0 chr11 43118111 43118399 -107665154 - AluY SINE Alu -23 288 1 4885 75 181 4 chr11 43120261 43121045 -107662508 - MER11A LTR ERVK -1 1265 343 528 86 38 19 chr11 43121145 43121250 -107662303 - MER11A LTR ERVK -1159 107 1 1586 158 118 31 chr11 43121527 43121983 -107661570 + LTR54B LTR ERV1 1 496 -2 214 208 19 19 chr11 43122696 43122749 -107660804 + GA-rich Low_complexity Low_complexity 2 54 0 234 219 70 102 chr11 43122891 43122961 -107660592 - MIR SINE MIR -12 250 184 1267 192 69 30 chr11 43122961 43123368 -107660185 + LTR37A LTR ERV1 3 425 -1 234 219 70 102 chr11 43123368 43123425 -107660128 - MIR SINE MIR -78 184 127 236 314 14 0 chr11 43123457 43123527 -107660026 - L2 LINE L2 -13 3259 3189 293 207 98 12 chr11 43123785 43123867 -107659686 - MIR SINE MIR -64 198 110 181 368 23 11 chr11 43123933 43124020 -107659533 - MIR SINE MIR -114 148 61 1469 171 115 9 chr11 43124172 43124511 -107659042 + THE1C LTR MaLR 1 375 0 9607 127 12 30 chr11 43124511 43126114 -107657439 + THE1C-int LTR MaLR 1 1575 -5 1896 148 52 25 chr11 43126118 43126483 -107657070 + THE1C LTR MaLR 1 375 0 1714 143 195 19 chr11 43127111 43127475 -107656078 - MSTA LTR MaLR 0 428 1 212 283 19 38 chr11 43127572 43127678 -107655875 + CT-rich Low_complexity Low_complexity 74 177 0 236 351 42 30 chr11 43128415 43128580 -107654973 - MIR SINE MIR -50 212 46 487 158 21 11 chr11 43128758 43128853 -107654700 + MER4A LTR ERV1 3 98 -566 1463 148 19 78 chr11 43128853 43129218 -107654335 + MER4A LTR ERV1 263 664 0 2512 175 7 13 chr11 43129750 43130210 -107653343 - LTR26B LTR ERV1 0 531 75 6501 186 140 40 chr11 43130210 43131805 -107651748 + MER52A LTR ERV1 1 1755 0 487 128 0 0 chr11 43131805 43131883 -107651670 - LTR26B LTR ERV1 -453 78 1 864 251 81 80 chr11 43132927 43133090 -107650463 + MER20B DNA MER1_type 199 360 -423 7398 34 5 0 chr11 43133090 43133982 -107649571 + L1PA4 LINE L1 5259 6154 -1 864 251 81 80 chr11 43133982 43134384 -107649169 + MER20B DNA MER1_type 360 765 -18 475 288 7 20 chr11 43134979 43135132 -107648421 + LTR52 LTR ERVL 1 151 -270 1755 211 42 26 chr11 43135140 43135595 -107647958 + MLT1C LTR MaLR 6 467 0 766 231 43 21 chr11 43135627 43135861 -107647692 + LTR52 LTR ERVL 169 407 -14 2530 89 47 47 chr11 43136086 43136514 -107647039 + L1MA1 LINE L1 5875 6302 0 196 380 60 27 chr11 43137374 43137558 -107645995 + MIR3 SINE MIR 14 203 -5 346 326 84 31 chr11 43138245 43138506 -107645047 + L2 LINE L2 2682 2956 -358 287 304 58 22 chr11 43138678 43138816 -107644737 + L2 LINE L2 3167 3309 -4 800 285 16 27 chr11 43138820 43139076 -107644477 - MIR SINE MIR 0 262 10 229 301 44 35 chr11 43139074 43139187 -107644366 - MIR3 SINE MIR -85 123 10 * 36 0 0 0 chr11 43140025 43140061 -107643492 + AT_rich Low_complexity Low_complexity 1 36 0 240 167 93 0 chr11 43140218 43140272 -107643281 + MIR3 SINE MIR 125 183 -25 21 36 0 0 chr11 43141006 43141034 -107642519 + AT_rich Low_complexity Low_complexity 1 28 0 423 283 96 28 chr11 43142098 43142275 -107641278 - MIR SINE MIR -71 191 3 2423 116 8 6 chr11 43142323 43142686 -107640867 - THE1B LTR MaLR 0 364 1 1057 305 78 42 chr11 43142835 43143589 -107639964 + L2 LINE L2 2521 3313 0 318 26 0 0 chr11 43144317 43144356 -107639197 + (GA)n Simple_repeat Simple_repeat 2 40 0 2480 28 0 3 chr11 43145259 43145574 -107637979 + AluY SINE Alu 1 314 0 338 353 0 8 chr11 43146326 43146448 -107637105 - MIR SINE MIR -94 168 48 389 260 33 19 chr11 43147773 43147901 -107635652 - MIR SINE MIR -64 144 38 194 324 130 19 chr11 43148477 43148585 -107634968 + L2 LINE L2 3142 3261 -11 234 289 107 33 chr11 43149066 43149122 -107634431 + MIR SINE MIR 25 75 -187 611 37 25 0 chr11 43149122 43149203 -107634350 + (TTTC)n Simple_repeat Simple_repeat 2 84 0 2128 102 0 4 chr11 43149205 43149480 -107634073 - AluSx SINE Alu -32 280 7 234 289 107 33 chr11 43149480 43149541 -107634012 + MIR SINE MIR 75 154 -108 23 0 0 0 chr11 43149596 43149619 -107633934 + AT_rich Low_complexity Low_complexity 1 23 0 1398 219 3 64 chr11 43150384 43150713 -107632840 + AluJo SINE Alu 1 309 -3 2609 39 0 10 chr11 43151425 43151735 -107631818 - AluY SINE Alu -4 307 1 1078 262 57 6 chr11 43153295 43153646 -107629907 + L2 LINE L2 2328 2696 -618 1031 259 57 59 chr11 43153718 43154143 -107629410 + L2 LINE L2 2890 3313 0 1395 167 11 7 chr11 43154358 43154633 -107628920 - AluY SINE Alu -14 297 22 282 73 0 0 chr11 43154650 43154691 -107628862 + (T)n Simple_repeat Simple_repeat 1 41 0 258 296 8 88 chr11 43155323 43155448 -107628105 + L2 LINE L2 3192 3306 -7 1642 176 48 0 chr11 43155576 43155871 -107627682 + AluSx SINE Alu 1 309 -3 189 74 0 0 chr11 43155969 43155996 -107627557 + (TTTTTG)n Simple_repeat Simple_repeat 3 29 0 475 246 7 18 chr11 43155996 43156172 -107627381 - L1MB7 LINE L1 -9 6157 5993 409 176 0 0 chr11 43156338 43156406 -107627147 - AluSg/x SINE Alu -39 270 203 261 0 0 0 chr11 43156579 43156608 -107626945 + (TG)n Simple_repeat Simple_repeat 1 29 0 1684 145 49 78 chr11 43156644 43157030 -107626523 - THE1C LTR MaLR 0 375 1 215 156 0 22 chr11 43157983 43158028 -107625525 + T-rich Low_complexity Low_complexity 5 48 0 2358 90 0 3 chr11 43158141 43158452 -107625101 + AluSg SINE Alu 1 310 0 2244 100 13 3 chr11 43159033 43159334 -107624219 - AluSq SINE Alu -9 304 1 1376 170 17 7 chr11 43159341 43159629 -107623924 - L1MA4 LINE L1 -2 6298 6008 636 255 7 7 chr11 43159839 43159992 -107623561 + MER45 DNA AcHobo 1415 1567 -14 252 0 0 0 chr11 43160695 43160723 -107622830 + (TA)n Simple_repeat Simple_repeat 2 29 0 625 218 11 75 chr11 43160724 43160912 -107622641 - MER20 DNA MER1_type -43 176 1 2171 126 0 19 chr11 43161167 43161484 -107622069 + AluSx SINE Alu 1 311 -1 40527 38 21 1 chr11 43161990 43168018 -107615535 - L1PA2 LINE L1 -1 6154 5 258 324 93 0 chr11 43168033 43168141 -107615412 - MIR SINE MIR -66 196 79 1078 271 43 6 chr11 43168272 43168597 -107614956 + MER93a LTR ERV1 65 401 -1 780 233 6 45 chr11 43168833 43169009 -107614544 - MER5A DNA MER1_type -19 170 2 229 326 67 11 chr11 43169101 43169239 -107614314 - MIR SINE MIR -62 146 2 231 309 43 14 chr11 43169888 43170027 -107613526 + (CATATA)n Simple_repeat Simple_repeat 3 145 0 302 339 40 24 chr11 43170099 43170223 -107613330 + MIR3 SINE MIR 51 176 -32 23 0 0 0 chr11 43170374 43170397 -107613156 + AT_rich Low_complexity Low_complexity 1 23 0 568 308 14 24 chr11 43170737 43170948 -107612605 - MIR SINE MIR -6 256 48 303 363 137 0 chr11 43171026 43171216 -107612337 - MIR SINE MIR -6 256 41 218 192 19 0 chr11 43172016 43172068 -107611485 + CT-rich Low_complexity Low_complexity 2 54 0 2356 183 2 12 chr11 43172823 43173314 -107610239 - L1MA3 LINE L1 -1 6304 5819 852 153 20 0 chr11 43173315 43173465 -107610088 + L1MA3 LINE L1 5669 5821 -479 246 288 0 0 chr11 43174966 43175025 -107608528 + MIR SINE MIR 202 260 -2 651 315 98 65 chr11 43175473 43175683 -107607870 + L2 LINE L2 2806 3008 -305 1647 171 18 14 chr11 43175683 43175969 -107607584 + AluJo SINE Alu 1 287 -25 651 315 98 65 chr11 43175969 43176250 -107607303 + L2 LINE L2 3008 3313 0 499 359 22 0 chr11 43176726 43176957 -107606596 - MIR SINE MIR -14 248 13 312 339 1 37 chr11 43177929 43178095 -107605458 - MER5A DNA MER1_type -16 164 2 23 0 0 0 chr11 43178318 43178341 -107605212 + AT_rich Low_complexity Low_complexity 1 23 0 2230 109 0 19 chr11 43178424 43178736 -107604817 + AluSc SINE Alu 1 306 -3 203 260 57 24 chr11 43179053 43179176 -107604377 + GA-rich Low_complexity Low_complexity 4 130 0 303 303 106 8 chr11 43179240 43179372 -107604181 - MER69A DNA AcHobo -31 146 2 24 0 0 0 chr11 43180855 43180879 -107602674 + AT_rich Low_complexity Low_complexity 1 24 0 228 317 10 10 chr11 43180920 43181021 -107602532 + GA-rich Low_complexity Low_complexity 2 102 0 902 306 75 65 chr11 43181517 43182167 -107601386 + L1M3d LINE L1 1 657 -5234 619 312 72 8 chr11 43182541 43182916 -107600637 + L1M3d LINE L1 691 1089 -4802 * 2474 242 113 20 chr11 43182909 43183398 -107600155 + L1M4c LINE L1 1260 1702 -4682 3899 179 23 29 chr11 43183398 43184188 -107599365 + LTR1 LTR ERV1 1 785 0 2474 242 113 20 chr11 43184188 43184787 -107598766 + L1M4c LINE L1 1702 2449 -3935 2252 218 31 8 chr11 43184915 43185433 -107598120 + L1MB3 LINE L1 5526 6055 -128 485 234 0 0 chr11 43185433 43185540 -107598013 - MER3 DNA MER1_type -41 168 62 1126 119 12 6 chr11 43185555 43185723 -107597830 - THE1B LTR MaLR -195 169 1 246 30 0 0 chr11 43185723 43185756 -107597797 - L1MB3 LINE L1 -108 6075 6043 1765 143 0 25 chr11 43185757 43186037 -107597516 + AluSx SINE Alu 1 273 -39 2211 98 3 25 chr11 43186180 43186496 -107597057 - AluSc SINE Alu 0 309 1 211 151 0 38 chr11 43186597 43186650 -107596903 + (TGAA)n Simple_repeat Simple_repeat 1 51 0 1226 302 103 30 chr11 43187850 43188492 -107595061 - MER115 DNA AcHobo 0 4031 1 821 311 29 0 chr11 43188498 43188736 -107594817 + MIR SINE MIR 15 259 -3 1996 116 3 11 chr11 43188894 43189202 -107594351 - AluSg SINE Alu 0 306 1 344 256 15 53 chr11 43189561 43189694 -107593859 + L1M4c LINE L1 2690 2817 -3565 2400 77 0 0 chr11 43192214 43192524 -107591029 - AluY SINE Alu -1 310 1 24 0 0 0 chr11 43192692 43192716 -107590837 + AT_rich Low_complexity Low_complexity 1 24 0 371 337 136 61 chr11 43192919 43193108 -107590445 + L2 LINE L2 2823 2997 -316 467 72 0 14 chr11 43193108 43193177 -107590376 + (TG)n Simple_repeat Simple_repeat 2 69 0 371 337 136 61 chr11 43193177 43193444 -107590109 + L2 LINE L2 2997 3313 0 1803 193 5 27 chr11 43193528 43193901 -107589652 - MLT1A1 LTR MaLR 0 365 1 607 320 36 5 chr11 43196246 43196465 -107587088 - MIR SINE MIR -21 241 16 284 302 0 0 chr11 43196578 43196641 -107586912 + MER69 DNA AcHobo 4 66 -2460 328 358 33 70 chr11 43196963 43197206 -107586347 + L2 LINE L2 3033 3266 -6 329 219 16 0 chr11 43197813 43197877 -107585676 - MIR3 SINE MIR 0 208 144 1431 260 70 41 chr11 43198487 43199026 -107584527 + MLT1E LTR MaLR 39 593 0 266 401 13 32 chr11 43199055 43199212 -107584341 + MER5B DNA MER1_type 1 154 -24 432 198 12 0 chr11 43300015 43300096 -107483457 - AluSg/x SINE Alu -19 290 209 1117 83 14 0 chr11 43300096 43300241 -107483312 + AluSg/x SINE Alu 162 308 -2 1169 96 0 0 chr11 43300526 43300672 -107482881 + AluSq/x SINE Alu 1 146 -167 1296 169 19 72 chr11 43300772 43301079 -107482474 - MLT1B LTR MaLR -94 296 6 1646 195 16 10 chr11 43302152 43302460 -107481093 - AluJb SINE Alu -2 310 1 253 231 39 77 chr11 43302460 43302590 -107480963 + HAL1 LINE L1 811 935 -1572 287 266 89 45 chr11 43302596 43302976 -107480577 + HAL1 LINE L1 880 1276 -1231 663 154 54 31 chr11 43303039 43303169 -107480384 + FLAM_C SINE Alu 6 138 -5 9518 127 33 2 chr11 43303300 43304666 -107478887 - L1P LINE L1 -3594 2552 1145 10470 54 4 5 chr11 43304857 43306161 -107477392 + L1P LINE L1 3 1305 -4841 7571 32 0 0 chr11 43306262 43307271 -107476282 + L1PA4 LINE L1 5171 6179 0 212 320 164 0 chr11 43308137 43308265 -107475288 + MIR SINE MIR 39 187 -75 291 280 47 28 chr11 43308285 43308392 -107475161 + MER91C DNA MER1_type 32 140 0 210 158 0 0 chr11 43308905 43308943 -107474610 + (TA)n Simple_repeat Simple_repeat 2 39 0 224 273 118 18 chr11 43309234 43309344 -107474209 - MIR3 SINE MIR -81 127 7 21 0 0 0 chr11 43309541 43309562 -107473991 + AT_rich Low_complexity Low_complexity 1 21 0 185 206 27 96 chr11 43309719 43309792 -107473761 - L3 LINE CR1 -5 1572 1505 338 350 32 0 chr11 43309799 43309939 -107473614 + MIR SINE MIR 45 187 -62 302 327 123 39 chr11 43309963 43310223 -107473330 + L2 LINE L2 2990 3271 -42 540 330 40 16 chr11 43310525 43310828 -107472725 - L3 LINE CR1 -80 1497 1188 1582 235 56 124 chr11 43311256 43311462 -107472091 + MLT1E2 LTR MaLR 1 219 -407 1561 215 0 7 chr11 43311462 43311760 -107471793 - AluJo SINE Alu -16 296 1 1582 235 56 124 chr11 43311760 43312162 -107471391 + MLT1E2 LTR MaLR 219 563 -63 928 123 0 0 chr11 43312162 43312308 -107471245 - L1MA4 LINE L1 -12 6288 6143 1582 235 56 124 chr11 43312308 43312361 -107471192 + MLT1E2 LTR MaLR 563 618 -8 2033 132 3 0 chr11 43313275 43313562 -107469991 - AluSx SINE Alu -19 293 6 911 306 56 14 chr11 43313759 43314119 -107469434 + MLT1I LTR MaLR 1 375 -34 378 231 0 0 chr11 43314497 43314588 -107468965 + (TATG)n Simple_repeat Simple_repeat 2 92 0 1311 188 26 16 chr11 43314928 43315232 -107468321 + L1MA4 LINE L1 5988 6294 -6 213 39 0 0 chr11 43315566 43315592 -107467961 + (TC)n Simple_repeat Simple_repeat 1 26 0 644 311 16 69 chr11 43315727 43316032 -107467521 + MLT1I LTR MaLR 110 398 -11 218 324 43 36 chr11 43316086 43316225 -107467328 + MIR SINE MIR 11 150 -112 275 338 0 0 chr11 43316228 43316296 -107467257 - L2 LINE L2 -17 3296 3229 305 310 63 19 chr11 43316764 43316922 -107466631 + L1MC/D LINE L1 5325 5489 -2319 407 180 34 0 chr11 43317536 43317625 -107465928 + AluS SINE Alu 1 92 -220 40 21 0 0 chr11 43318557 43318604 -107464949 + AT_rich Low_complexity Low_complexity 1 47 0 226 260 0 0 chr11 43318848 43318898 -107464655 - MIR SINE MIR 0 262 213 27 49 0 0 chr11 43318976 43319017 -107464536 + AT_rich Low_complexity Low_complexity 1 41 0 21 0 0 0 chr11 43319469 43319490 -107464063 + AT_rich Low_complexity Low_complexity 1 21 0 556 176 0 0 chr11 43319611 43319713 -107463840 + L1PB4 LINE L1 6053 6154 -2 1231 41 0 0 chr11 43319913 43320060 -107463493 - AluY SINE Alu 0 311 165 559 327 93 14 chr11 43320295 43320650 -107462903 - LTR33 LTR ERVL -8 513 131 195 42 0 0 chr11 43321965 43321989 -107461564 + (TG)n Simple_repeat Simple_repeat 2 25 0 303 317 98 24 chr11 43322550 43322673 -107460880 - L2 LINE L2 0 3313 3182 227 277 12 48 chr11 43323209 43323292 -107460261 - L2 LINE L2 -76 3237 3158 625 322 140 24 chr11 43324859 43325316 -107458237 + L2 LINE L2 1974 2483 -831 408 269 0 106 chr11 43325305 43325532 -107458021 + L2 LINE L2 3101 3303 -10 * 1882 180 0 6 chr11 43325709 43326036 -107457517 + MER7A DNA MER2_type 2 324 -22 202 263 220 5 chr11 43326136 43326230 -107457323 + MIR SINE MIR 42 154 -68 468 0 0 0 chr11 43326326 43326378 -107457175 + (TA)n Simple_repeat Simple_repeat 1 52 0 618 86 11 0 chr11 43326648 43326741 -107456812 - AluY SINE Alu -11 300 207 432 0 0 0 chr11 43327533 43327581 -107455972 + (CA)n Simple_repeat Simple_repeat 2 49 0 9549 148 32 10 chr11 43327581 43329225 -107454328 + Tigger1 DNA MER2_type 10 1688 -730 1224 118 110 28 chr11 43329226 43329480 -107454073 + L1MA2 LINE L1 6030 6304 0 27 0 0 0 chr11 43329480 43329507 -107454046 + AT_rich Low_complexity Low_complexity 1 27 0 851 174 0 0 chr11 43329508 43329663 -107453890 + Tigger1 DNA MER2_type 1683 1837 -581 3264 143 27 38 chr11 43331299 43331762 -107451791 + Tigger1 DNA MER2_type 1820 2277 -141 2212 99 0 0 chr11 43331762 43332081 -107451472 + AluSx SINE Alu 1 319 0 3264 143 27 38 chr11 43332081 43332218 -107451335 + Tigger1 DNA MER2_type 2277 2414 -4 186 43 0 0 chr11 43332220 43332243 -107451310 + (TC)n Simple_repeat Simple_repeat 2 24 0 * 204 40 0 0 chr11 43332242 43332267 -107451286 + (TG)n Simple_repeat Simple_repeat 2 26 0 243 254 95 16 chr11 43334395 43334458 -107449095 - L2 LINE L2 -4 3268 3201 280 363 22 0 chr11 43335287 43335422 -107448131 - MIR SINE MIR -71 191 54 39102 57 2 0 chr11 43336098 43341029 -107442524 + L1P LINE L1 2 4940 -1206 1169 190 31 27 chr11 43341171 43341429 -107442124 + AluJo SINE Alu 35 293 -19 1083 184 5 49 chr11 43341431 43341654 -107441899 - MER46A DNA MER2_type -22 214 2 534 178 0 0 chr11 43342075 43342176 -107441377 + AluSq/x SINE Alu 11 111 -201 1980 147 11 38 chr11 43342505 43342873 -107440680 - THE1B LTR MaLR -6 358 1 3062 142 8 17 chr11 43342873 43343396 -107440157 - THE1B-int LTR MaLR 0 1580 1063 1626 205 84 15 chr11 43345520 43345924 -107437629 + L1MB7 LINE L1 5560 5991 -193 1004 206 0 0 chr11 43345964 43346163 -107437390 - AluSg/x SINE Alu -9 301 103 881 241 236 21 chr11 43346377 43346763 -107436790 + MLT1H LTR MaLR 37 505 -44 567 289 25 41 chr11 43348635 43348832 -107434721 - MIR SINE MIR -6 256 63 840 297 41 19 chr11 43349811 43350080 -107433473 + LTR33 LTR ERVL 1 275 -246 215 280 53 0 chr11 43350586 43350661 -107432892 + L2 LINE L2 2891 2969 -303 411 289 31 8 chr11 43350781 43350909 -107432644 + L2 LINE L2 3140 3270 -2 231 152 0 0 chr11 43350909 43350955 -107432598 + (TGGA)n Simple_repeat Simple_repeat 1 46 0 238 294 92 9 chr11 43351251 43351360 -107432193 - MIR SINE MIR -11 251 134 186 133 0 0 chr11 43351885 43351915 -107431638 + (TG)n Simple_repeat Simple_repeat 1 30 0 794 193 22 28 chr11 43352112 43352293 -107431260 + MLT1C LTR MaLR 1 180 -287 678 206 28 14 chr11 43352291 43352432 -107431121 + MLT1C LTR MaLR 317 459 -8 * 1303 192 3 85 chr11 43352540 43352878 -107430675 + AluJo SINE Alu 2 314 0 1197 224 46 16 chr11 43352882 43353186 -107430367 - MER4D LTR ERV1 -42 861 549 1505 171 14 45 chr11 43353218 43353510 -107430043 - MER49 LTR ERV1 -640 283 1 258 222 56 48 chr11 43354400 43354526 -107429027 - L1ME LINE L1 -222 5899 5773 22 88 0 0 chr11 43354552 43354609 -107428944 + AT_rich Low_complexity Low_complexity 1 57 0 860 128 21 0 chr11 43354795 43354936 -107428617 - MER41B LTR ERV1 0 635 492 504 302 104 9 chr11 43355078 43355300 -107428253 - MIR SINE MIR -18 244 2 21 0 0 0 chr11 43355812 43355833 -107427720 + AT_rich Low_complexity Low_complexity 1 21 0 503 247 43 21 chr11 43356369 43356555 -107426998 - L1MC5 LINE L1 -44 7917 7728 21 71 0 0 chr11 43357190 43357232 -107426321 + AT_rich Low_complexity Low_complexity 1 42 0 213 39 0 0 chr11 43358301 43358327 -107425226 + (CA)n Simple_repeat Simple_repeat 1 26 0 507 300 185 20 chr11 43358336 43358639 -107424914 - L2 LINE L2 -33 3280 2928 182 324 216 0 chr11 43360127 43360229 -107423324 - L2 LINE L2 -1 3271 3148 529 304 242 22 chr11 43360957 43361577 -107421976 + L2 LINE L2 2546 3313 0 446 341 43 46 chr11 43361996 43362243 -107421310 - MIR SINE MIR -3 259 11 372 276 113 41 chr11 43362650 43362734 -107420819 - MIR SINE MIR -6 256 180 3841 152 24 68 chr11 43362734 43363555 -107419998 - LTR1 LTR ERV1 0 785 1 372 276 113 41 chr11 43363555 43363691 -107419862 - MIR SINE MIR -82 180 20 24 106 0 0 chr11 43364692 43364786 -107418767 + AT_rich Low_complexity Low_complexity 1 94 0 22 80 0 0 chr11 43365452 43365502 -107418051 + AT_rich Low_complexity Low_complexity 1 50 0 2315 111 5 72 chr11 43365502 43365890 -107417663 + THE1B LTR MaLR 1 362 -2 567 58 0 0 chr11 43365892 43365961 -107417592 + THE1B-int LTR MaLR 1 69 -1511 443 319 14 48 chr11 43366061 43366131 -107417422 + LTR33 LTR ERVL 315 386 -135 1975 150 132 8 chr11 43366131 43366510 -107417043 + MSTA LTR MaLR 1 426 -2 443 319 14 48 chr11 43366510 43366646 -107416907 + LTR33 LTR ERVL 386 514 -7 24 0 0 0 chr11 43367901 43367925 -107415628 + AT_rich Low_complexity Low_complexity 1 24 0 266 314 44 7 chr11 43368060 43368197 -107415356 + MER103 DNA DNA 6 147 -19 27 49 0 0 chr11 43368289 43368330 -107415223 + AT_rich Low_complexity Low_complexity 1 41 0 505 229 0 0 chr11 43368333 43368429 -107415124 - U6 snRNA snRNA -11 96 1 298 345 35 30 chr11 43368473 43368676 -107414877 - L3 LINE CR1 -22 1555 1352 2599 38 0 22 chr11 43368677 43368993 -107414560 - AluY SINE Alu -2 309 1 230 366 54 21 chr11 43369125 43369218 -107414335 - MIR3 SINE MIR -31 177 82 375 288 34 34 chr11 43369481 43369627 -107413926 + MIR SINE MIR 53 198 -64 29 28 0 0 chr11 43369629 43369665 -107413888 + AT_rich Low_complexity Low_complexity 1 36 0 385 309 87 19 chr11 43371934 43372141 -107411412 - MLT1J LTR MaLR -290 221 1 480 301 21 38 chr11 43373110 43373296 -107410257 + MIR SINE MIR 5 187 -75 1432 112 35 46 chr11 43373517 43373802 -107409751 + L1MA8 LINE L1 6009 6290 -1 324 0 0 0 chr11 43374715 43374751 -107408802 + (TG)n Simple_repeat Simple_repeat 2 37 0 775 251 27 11 chr11 43375037 43375220 -107408333 + MER20 DNA MER1_type 32 217 -2 375 202 0 0 chr11 43375649 43375733 -107407820 + (TA)n Simple_repeat Simple_repeat 1 84 0 7298 36 3 21 chr11 43375733 43376851 -107406702 - L1PA5 LINE L1 -12 6142 5033 218 384 87 11 chr11 43377049 43377234 -107406319 - L2 LINE L2 -785 2529 2331 1020 196 51 28 chr11 43378065 43378376 -107405177 - MLT1B LTR MaLR 0 390 15 396 263 102 81 chr11 43378442 43378823 -107404730 + L1MEd LINE L1 732 1120 -4999 288 273 81 73 chr11 43378900 43379160 -107404393 + L1MEd LINE L1 1254 1603 -887 235 183 33 0 chr11 43379188 43379248 -107404305 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 188 111 28 0 chr11 43379356 43379392 -107404161 + (TAGA)n Simple_repeat Simple_repeat 4 40 0 891 176 33 0 chr11 43379848 43380001 -107403552 + FRAM SINE Alu 13 170 -6 298 285 93 36 chr11 43380349 43380542 -107403011 - L2 LINE L2 -1293 2021 1818 395 367 115 14 chr11 43380617 43380722 -107402831 - L2 LINE L2 -1479 1835 1742 324 0 0 0 chr11 43380722 43380758 -107402795 + (TG)n Simple_repeat Simple_repeat 2 37 0 395 367 115 14 chr11 43380758 43381077 -107402476 - L2 LINE L2 -1572 1742 1368 23 78 0 0 chr11 43381814 43381865 -107401688 + AT_rich Low_complexity Low_complexity 1 51 0 908 119 0 0 chr11 43381865 43381983 -107401570 - FLAM_C SINE Alu -25 118 1 3957 92 8 28 chr11 43382050 43382668 -107400885 - L1MA2 LINE L1 0 6304 5699 194 182 114 125 chr11 43383957 43384045 -107399508 + L2 LINE L2 3186 3272 0 601 278 23 6 chr11 43384405 43384578 -107398975 - MIR SINE MIR 0 262 87 240 35 0 0 chr11 43384640 43384669 -107398884 + (T)n Simple_repeat Simple_repeat 1 29 0 227 267 67 33 chr11 43385188 43385278 -107398275 - MIR SINE MIR -152 110 18 3260 92 20 14 chr11 43385792 43386282 -107397271 - L1P4 LINE L1 -390 5773 5281 1379 123 5 0 chr11 43386282 43386492 -107397061 + L1PA13 LINE L1 5952 6163 0 364 277 9 27 chr11 43386561 43386673 -107396880 + L2 LINE L2 3204 3313 0 315 49 0 0 chr11 43386911 43386952 -107396601 + (TG)n Simple_repeat Simple_repeat 2 42 0 551 285 67 6 chr11 43387138 43387317 -107396236 + MIR SINE MIR 73 262 0 2474 55 0 13 chr11 43388403 43388710 -107394843 + AluY SINE Alu 1 303 -8 194 261 80 148 chr11 43389221 43389397 -107394156 - L2 LINE L2 -1 3312 3149 250 218 115 0 chr11 43389546 43389624 -107393929 - L1ME LINE L1 -266 5855 5769 434 299 22 0 chr11 43389643 43389777 -107393776 - L1PB4 LINE L1 -24 6132 5996 372 340 78 5 chr11 43389778 43389984 -107393569 - L1ME LINE L1 -341 5780 5560 223 286 8 79 chr11 43390025 43390151 -107393402 + MIR SINE MIR 71 187 -75 300 369 25 19 chr11 43391360 43391520 -107392033 + MIR SINE MIR 14 174 -88 180 284 14 40 chr11 43393081 43393155 -107390398 - MIR SINE MIR -64 198 127 663 316 103 28 chr11 43393809 43394198 -107389355 + MLT1J LTR MaLR 1 418 -93 241 342 72 0 chr11 43394216 43394327 -107389226 - MIR SINE MIR -58 204 86 201 39 0 0 chr11 43394563 43394589 -107388964 + (TCTA)n Simple_repeat Simple_repeat 3 28 0 184 175 53 0 chr11 43394593 43394650 -107388903 + GA-rich Low_complexity Low_complexity 2 61 0 466 339 27 5 chr11 43395378 43395564 -107387989 + MIR SINE MIR 14 203 -59 6760 161 204 30 chr11 43395564 43397059 -107386494 - MER52A LTR ERV1 0 1755 1 2361 319 85 30 chr11 43398550 43399428 -107384125 + L2 LINE L2 1692 2703 -610 2511 61 0 0 chr11 43399428 43399725 -107383828 - AluY SINE Alu -14 297 1 2361 319 85 30 chr11 43399725 43400327 -107383226 + L2 LINE L2 2703 3270 -43 1787 108 4 23 chr11 43400331 43400590 -107382963 + AluSx SINE Alu 59 312 0 253 208 19 0 chr11 43401045 43401098 -107382455 - MER67D LTR ERV1 -29 485 432 2538 198 62 28 chr11 43402061 43402520 -107381033 + L1MB7 LINE L1 5540 6027 -157 2177 131 0 0 chr11 43402520 43402825 -107380728 - AluSx SINE Alu -7 305 1 2538 198 62 28 chr11 43402825 43402981 -107380572 + L1MB7 LINE L1 6027 6176 -8 231 36 0 0 chr11 43402991 43403019 -107380534 + (TA)n Simple_repeat Simple_repeat 2 29 0 319 252 76 42 chr11 43403072 43403191 -107380362 - L1ME4a LINE L1 -244 5877 5755 * 349 217 48 12 chr11 43403188 43403271 -107380282 - L1MC4 LINE L1 -1340 6702 6617 2248 59 0 62 chr11 43403271 43403578 -107379975 - AluY SINE Alu -20 291 4 311 295 174 0 chr11 43404934 43405083 -107378470 - MIR SINE MIR -40 222 48 2520 81 43 124 chr11 43405143 43405626 -107377927 + L1PA11 LINE L1 5728 6171 -3 5543 51 0 1 chr11 43406013 43406701 -107376852 + L1PA5 LINE L1 5468 6154 0 1974 168 0 23 chr11 43406896 43407241 -107376312 + MER1B DNA MER1_type 1 337 0 2117 125 39 30 chr11 43407461 43407822 -107375731 - THE1B LTR MaLR 0 364 1 1396 201 48 68 chr11 43407844 43408241 -107375312 - MLT1B LTR MaLR -1 389 1 478 243 27 0 chr11 43408246 43408357 -107375196 - MLT1B-int LTR MaLR -5 1366 1253 1202 82 0 13 chr11 43408357 43408516 -107375037 - AluSg/x SINE Alu -2 308 152 3320 236 94 34 chr11 43408535 43408821 -107374732 - MLT1B-int LTR MaLR -129 1606 1339 858 176 16 52 chr11 43408821 43409014 -107374539 - L1PA15 LINE L1 -9 6156 5971 3320 236 94 34 chr11 43409014 43410190 -107373363 - MLT1B-int LTR MaLR -396 1339 1 914 209 46 10 chr11 43410190 43410386 -107373167 - MLT1B LTR MaLR 0 390 188 222 118 0 0 chr11 43410401 43410435 -107373118 + (GGGAGA)n Simple_repeat Simple_repeat 4 37 0 544 207 98 23 chr11 43410470 43410644 -107372909 - MLT1B LTR MaLR -203 187 1 459 227 35 57 chr11 43410723 43410864 -107372689 + MER5B DNA MER1_type 39 176 -2 186 271 51 17 chr11 43411102 43411161 -107372392 + MIR SINE MIR 19 79 -183 624 301 71 38 chr11 43412088 43412327 -107371226 + MIR SINE MIR 8 254 -8 749 356 67 27 chr11 43412582 43413301 -107370252 + L2 LINE L2 2565 3312 -1 443 304 164 0 chr11 43414240 43414441 -107369112 - MIR SINE MIR -18 244 11 2361 92 0 0 chr11 43414946 43415241 -107368312 + AluSx SINE Alu 3 297 -15 408 310 82 27 chr11 43415392 43415576 -107367977 + MIR SINE MIR 57 250 -12 405 39 0 0 chr11 43416083 43416134 -107367419 + (TG)n Simple_repeat Simple_repeat 2 52 0 24 0 0 0 chr11 43417491 43417515 -107366038 + AT_rich Low_complexity Low_complexity 1 24 0 260 315 55 55 chr11 43417774 43417974 -107365579 - L2 LINE L2 -22 3291 3092 384 338 38 42 chr11 43418150 43418363 -107365190 - L2 LINE L2 -263 3050 2839 25 31 0 0 chr11 43419929 43419961 -107363592 + AT_rich Low_complexity Low_complexity 1 32 0 201 286 0 0 chr11 43420128 43420170 -107363383 - L2 LINE L2 -18 3254 3213 309 250 0 0 chr11 43421305 43421397 -107362156 + (TCCA)n Simple_repeat Simple_repeat 4 95 0 243 352 93 0 chr11 43421605 43421713 -107361840 + MIR3 SINE MIR 46 163 -45 1688 227 157 18 chr11 43423159 43423656 -107359897 - MLT1E LTR MaLR -1 592 27 9212 165 91 5 chr11 43423688 43425476 -107358077 - Tigger2 DNA MER2_type -1 2717 777 877 164 7 26 chr11 43425696 43425848 -107357705 - AluJo SINE Alu -150 162 14 292 230 11 11 chr11 43425861 43425948 -107357605 - L1M LINE L1 -767 5403 5317 401 135 14 0 chr11 43426029 43426103 -107357450 + L1MA7 LINE L1 6213 6287 -4 699 138 0 0 chr11 43426219 43426335 -107357218 - L1PA15 LINE L1 -4 6161 6046 269 265 15 0 chr11 43427028 43427096 -107356457 + L2 LINE L2 3202 3270 -2 199 424 93 0 chr11 43427908 43428026 -107355527 - L2 LINE L2 -25 3247 3119 1077 239 0 5 chr11 43428036 43428258 -107355295 - MER58A DNA MER1_type -3 221 1 238 293 75 9 chr11 43428331 43428437 -107355116 + L1ME LINE L1 5374 5486 -2322 377 356 72 14 chr11 43428537 43428745 -107354808 - MIR SINE MIR -10 252 33 235 326 0 0 chr11 43428880 43428969 -107354584 + L1ME LINE L1 5722 5810 -311 399 271 82 71 chr11 43429861 43430031 -107353522 - MER5B DNA MER1_type -6 172 1 854 225 39 0 chr11 43431172 43431354 -107352199 + MER5A DNA MER1_type 1 189 0 226 370 14 0 chr11 43431358 43431431 -107352122 + L2 LINE L2 3150 3223 -49 1774 134 75 31 chr11 43431821 43432180 -107351373 - THE1C LTR MaLR 0 375 1 2208 182 28 97 chr11 43432801 43433484 -107350069 - MER92B LTR ERV1 0 636 1 272 297 99 9 chr11 43433489 43433600 -107349953 - MIR SINE MIR -58 204 84 209 194 0 0 chr11 43435571 43435607 -107347946 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 1856 163 20 0 chr11 43436402 43436702 -107346851 - AluSx SINE Alu -6 306 1 274 294 70 49 chr11 43437226 43437369 -107346184 + L2 LINE L2 2824 2969 -303 672 140 9 0 chr11 43437514 43437621 -107345932 - MER41B LTR ERV1 -527 108 1 27 0 0 0 chr11 43439936 43439963 -107343590 + AT_rich Low_complexity Low_complexity 1 27 0 978 235 93 14 chr11 43439988 43440333 -107343220 - MER113 DNA MER1_type? -98 423 52 225 216 39 0 chr11 43440687 43440738 -107342815 - L2 LINE L2 0 3313 3261 661 285 44 44 chr11 43441242 43441561 -107341992 - MLT1I LTR MaLR 0 409 91 21 0 0 0 chr11 43441908 43441929 -107341624 + AT_rich Low_complexity Low_complexity 1 21 0 411 205 36 0 chr11 43442188 43442271 -107341282 - MLT1H1 LTR MaLR -7 548 463 22 0 0 0 chr11 43442918 43442940 -107340613 + AT_rich Low_complexity Low_complexity 1 22 0 243 0 0 0 chr11 43442978 43443005 -107340548 + (TTTAA)n Simple_repeat Simple_repeat 1 27 0 749 114 65 24 chr11 43443005 43443120 -107340433 - L1PA10 LINE L1 -21 6147 6025 316 276 40 19 chr11 43443453 43443564 -107339989 - MLT1H LTR MaLR -376 173 12 287 336 60 13 chr11 43444846 43445020 -107338533 + MIR SINE MIR 30 211 -51 846 289 83 18 chr11 43445172 43445596 -107337957 + L3 LINE CR1 832 1343 -234 2649 16 0 19 chr11 43445614 43445928 -107337625 + AluYa5 SINE Alu 1 308 -3 1965 105 69 0 chr11 43446902 43447220 -107336333 + AluSg SINE Alu 2 338 0 264 30 0 0 chr11 43447407 43447440 -107336113 + (CA)n Simple_repeat Simple_repeat 2 34 0 21 0 0 0 chr11 43448226 43448247 -107335306 + AT_rich Low_complexity Low_complexity 1 21 0 378 320 66 11 chr11 43448549 43448730 -107334823 - MIR SINE MIR -26 236 46 222 260 96 67 chr11 43449618 43449722 -107333831 + L2 LINE L2 3207 3313 0 977 275 74 18 chr11 43450043 43450484 -107333069 + MLT1C LTR MaLR 1 467 0 871 281 76 17 chr11 43452852 43453140 -107330413 - L2 LINE L2 -34 3279 2975 1107 206 48 75 chr11 43453143 43453516 -107330037 + MLT1A1 LTR MaLR 1 363 -2 317 345 51 35 chr11 43453517 43453714 -107329839 - L2 LINE L2 -338 2976 2777 1689 132 21 43 chr11 43454069 43454396 -107329157 - L1MA2 LINE L1 0 6304 5985 551 305 10 15 chr11 43454404 43454604 -107328949 - MIR SINE MIR -60 202 4 374 347 71 19 chr11 43455045 43455313 -107328240 + HAL1 LINE L1 824 1105 -1402 246 147 0 0 chr11 43455313 43455347 -107328206 + Alu SINE Alu 1 34 -267 844 237 6 0 chr11 43455868 43456041 -107327512 + FAM SINE Alu 1 174 -1 205 345 151 29 chr11 43456269 43456408 -107327145 - L2 LINE L2 0 3272 3117 2129 123 5 75 chr11 43458751 43459140 -107324413 + THE1B LTR MaLR 1 362 -2 11472 97 2 10 chr11 43459142 43460734 -107322819 + THE1B-int LTR MaLR 1 1580 0 2342 107 11 35 chr11 43460734 43461107 -107322446 + THE1B LTR MaLR 1 364 0 267 341 60 17 chr11 43461330 43461484 -107322069 - MIR SINE MIR -75 133 11 319 323 114 80 chr11 43463647 43464096 -107319457 + L2 LINE L2 2809 3272 0 207 329 37 0 chr11 43464540 43464622 -107318931 + MIR3 SINE MIR 99 183 -25 2202 114 0 0 chr11 43464900 43465197 -107318356 + AluSg1 SINE Alu 1 297 -12 184 319 0 0 chr11 43465197 43465244 -107318309 - MER5A DNA MER1_type -56 133 87 1539 192 21 10 chr11 43465244 43465535 -107318018 + AluJo SINE Alu 1 294 -18 960 298 72 57 chr11 43466660 43466874 -107316679 + L2 LINE L2 2837 3046 -267 531 0 0 0 chr11 43466874 43466933 -107316620 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 1707 125 4 12 chr11 43466936 43467184 -107316369 - AluSx SINE Alu -30 282 37 960 298 72 57 chr11 43467184 43467435 -107316118 + L2 LINE L2 3047 3313 0 229 389 75 48 chr11 43467708 43468150 -107315403 - L2 LINE L2 -4 3268 2815 837 322 69 13 chr11 43468198 43468574 -107314979 + MLT1I LTR MaLR 1 397 -12 205 396 9 0 chr11 43468620 43468726 -107314827 - L2 LINE L2 -609 2705 2599 378 283 57 121 chr11 43468760 43469233 -107314320 - L2 LINE L2 -705 2609 2167 22 0 0 0 chr11 43469406 43469428 -107314125 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr11 43469450 43469471 -107314082 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr11 43470058 43470082 -107313471 + AT_rich Low_complexity Low_complexity 1 24 0 204 353 19 104 chr11 43470229 43470498 -107313055 - L2 LINE L2 -188 3084 2839 467 258 39 77 chr11 43470878 43471042 -107312511 + MIR3 SINE MIR 49 207 -1 221 228 89 51 chr11 43473077 43473156 -107310397 - MIR SINE MIR -81 181 100 * 511 321 53 19 chr11 43473148 43473357 -107310196 + MIR SINE MIR 13 228 -34 783 235 16 5 chr11 43473357 43473544 -107310009 + MER5A DNA MER1_type 1 189 0 364 296 145 0 chr11 43473916 43474088 -107309465 + MIR SINE MIR 66 262 0 544 295 32 16 chr11 43474094 43474284 -107309269 - MIR SINE MIR -52 210 18 208 343 0 0 chr11 43474685 43474758 -107308795 + MIR3 SINE MIR 114 186 -22 198 132 57 0 chr11 43476384 43476437 -107307116 + CT-rich Low_complexity Low_complexity 1 56 0 1973 156 3 0 chr11 43476438 43476740 -107306813 - AluSx SINE Alu -7 305 3 185 91 0 30 chr11 43476869 43476902 -107306651 + (TTTTTA)n Simple_repeat Simple_repeat 3 34 0 1111 173 4 62 chr11 43477150 43477376 -107306177 + MER46A DNA MER2_type 2 214 -22 1291 185 31 16 chr11 43477378 43477632 -107305921 - AluJo SINE Alu -20 292 35 262 231 66 44 chr11 43477967 43478058 -107305495 + MIR SINE MIR 168 260 -2 303 306 49 35 chr11 43478215 43478359 -107305194 + MIR3 SINE MIR 16 161 -47 296 307 86 18 chr11 43478851 43479014 -107304539 - L2 LINE L2 -5 3308 3135 3070 237 47 16 chr11 43479288 43480730 -107302823 - L1MB8 LINE L1 0 6178 4678 182 333 171 8 chr11 43480781 43480904 -107302649 + L2 LINE L2 3121 3263 -9 263 323 55 30 chr11 43481000 43481164 -107302389 + MIR3 SINE MIR 11 178 -30 21 71 0 0 chr11 43481318 43481360 -107302193 + AT_rich Low_complexity Low_complexity 1 42 0 10404 181 39 20 chr11 43482249 43483792 -107299761 - L1PA13 LINE L1 -3 6160 4647 279 54 0 0 chr11 43483792 43483829 -107299724 + (TTA)n Simple_repeat Simple_repeat 2 38 0 1886 133 7 11 chr11 43483829 43484115 -107299438 - AluSq SINE Alu -28 285 1 10404 181 39 20 chr11 43484115 43484266 -107299287 - L1PA13 LINE L1 -1516 4647 4500 261 0 0 0 chr11 43484266 43484295 -107299258 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 10404 181 39 20 chr11 43484295 43485650 -107297903 - L1PA13 LINE L1 -1663 4500 3050 318 313 0 0 chr11 43486644 43486727 -107296826 - MER91 DNA MER1_type -61 129 47 246 347 69 42 chr11 43487483 43487699 -107295854 + L2 LINE L2 2665 2886 -428 1808 153 43 38 chr11 43489004 43489377 -107294176 + THE1C LTR MaLR 1 375 0 545 327 198 35 chr11 43489573 43489849 -107293704 - L2 LINE L2 -2 3311 2951 2041 80 4 0 chr11 43489849 43490113 -107293440 - AluY SINE Alu -2 309 45 545 327 198 35 chr11 43490113 43490231 -107293322 - L2 LINE L2 -362 2951 2853 1961 96 3 87 chr11 43490269 43490591 -107292962 - AluSc SINE Alu -14 295 1 301 290 31 68 chr11 43490768 43490930 -107292623 - L2 LINE L2 -2743 571 416 25 0 0 0 chr11 43492268 43492293 -107291260 + AT_rich Low_complexity Low_complexity 1 25 0 205 205 51 26 chr11 43493183 43493261 -107290292 + (TATAA)n Simple_repeat Simple_repeat 5 84 0 1779 179 19 22 chr11 43493422 43493791 -107289762 - THE1C LTR MaLR -3 372 5 345 290 88 31 chr11 43494203 43494396 -107289157 - L1ME4a LINE L1 -207 5914 5711 184 257 135 0 chr11 43496149 43496223 -107287330 + MIR SINE MIR 45 128 -80 249 289 44 11 chr11 43496317 43496407 -107287146 + LTR67 LTR ERVL 446 538 -19 422 320 102 15 chr11 43496515 43496721 -107286832 - MIR SINE MIR -2 260 37 654 223 0 0 chr11 43496776 43496897 -107286656 + FLAM_A SINE Alu 4 124 -9 21 0 0 0 chr11 43497908 43497929 -107285624 + AT_rich Low_complexity Low_complexity 1 21 0 306 73 0 0 chr11 43498431 43498472 -107285081 + (T)n Simple_repeat Simple_repeat 1 41 0 452 296 101 0 chr11 43498800 43498959 -107284594 - MIR SINE MIR -27 235 61 2280 105 0 6 chr11 43499520 43499834 -107283719 - AluSx SINE Alu 0 312 1 21 0 0 0 chr11 43499834 43499855 -107283698 + AT_rich Low_complexity Low_complexity 1 21 0 625 294 36 14 chr11 43499961 43500182 -107283371 - MIR SINE MIR -30 232 7 21 0 0 0 chr11 43500713 43500734 -107282819 + AT_rich Low_complexity Low_complexity 1 21 0 653 234 108 52 chr11 43501692 43501923 -107281630 + MIR SINE MIR 4 247 -15 189 0 0 0 chr11 43501952 43501973 -107281580 + (A)n Simple_repeat Simple_repeat 1 21 0 23 0 0 0 chr11 43502605 43502628 -107280925 + AT_rich Low_complexity Low_complexity 1 23 0 222 204 0 0 chr11 43502642 43502686 -107280867 + (TG)n Simple_repeat Simple_repeat 2 45 0 2347 97 0 3 chr11 43503748 43504058 -107279495 + AluSp SINE Alu 1 309 -4 1422 134 36 9 chr11 43504504 43504727 -107278826 + MER30 DNA MER1_type 1 229 -1 2148 305 76 45 chr11 43505238 43505648 -107277905 - L2 LINE L2 -461 2853 2457 1807 172 125 10 chr11 43505648 43506032 -107277521 + MSTA LTR MaLR 1 428 0 9218 140 3 63 chr11 43506034 43507712 -107275841 + MSTA-int LTR MaLR 3 1580 0 1159 193 179 35 chr11 43507712 43508086 -107275467 + MSTA LTR MaLR 1 428 0 2148 305 76 45 chr11 43508086 43508922 -107274631 - L2 LINE L2 -856 2458 1564 741 0 0 0 chr11 43509264 43509351 -107274202 + L1HS LINE L1 6069 6155 0 213 94 0 0 chr11 43509358 43509390 -107274163 + (A)n Simple_repeat Simple_repeat 1 32 0 1842 182 54 44 chr11 43510865 43511293 -107272260 + MSTB1 LTR MaLR 1 432 0 1165 174 147 26 chr11 43511700 43512025 -107271528 - MSTA LTR MaLR 0 428 43 4559 142 89 3 chr11 43512030 43512952 -107270601 - Tigger1 DNA MER2_type -180 2238 1149 26203 146 16 64 chr11 43512973 43515974 -107267579 - L1PA8 LINE L1 -1 6171 3655 2084 126 6 25 chr11 43515974 43516291 -107267262 - AluSx SINE Alu -1 311 1 26203 146 16 64 chr11 43516291 43519762 -107263791 - L1PA8 LINE L1 -2517 3655 20 306 203 0 14 chr11 43519762 43519831 -107263722 - MSTA LTR MaLR -359 69 2 679 318 104 53 chr11 43520394 43521167 -107262386 + L2 LINE L2 2457 3295 -18 860 251 58 81 chr11 43521335 43521446 -107262107 - MLT1C LTR MaLR 0 390 278 192 40 0 0 chr11 43521446 43521471 -107262082 + (TC)n Simple_repeat Simple_repeat 1 25 0 860 251 58 81 chr11 43521471 43521753 -107261800 - MLT1C LTR MaLR -112 278 6 216 300 14 29 chr11 43521776 43521846 -107261707 + L2 LINE L2 3156 3224 -48 225 143 0 0 chr11 43522054 43522089 -107261464 - L1PA13 LINE L1 -207 5956 5922 1298 146 0 0 chr11 43522091 43522297 -107261256 + L1PA13 LINE L1 5942 6147 -16 216 308 31 54 chr11 43522313 43522443 -107261110 - L2 LINE L2 -9 3304 3178 207 357 57 57 chr11 43523430 43523674 -107259879 - L2 LINE L2 -702 2612 2369 1214 236 57 38 chr11 43523703 43524072 -107259481 + MLT1B LTR MaLR 15 390 0 265 331 200 0 chr11 43524285 43524367 -107259186 - MER5A DNA MER1_type -7 182 118 2072 125 0 0 chr11 43524367 43524647 -107258906 - AluSx SINE Alu -20 292 13 265 331 200 0 chr11 43524647 43524709 -107258844 - MER5A DNA MER1_type -71 118 9 5361 147 14 12 chr11 43525189 43525799 -107257754 - L1PA15 LINE L1 -13 6152 5540 7349 195 52 73 chr11 43525799 43527592 -107255961 - MER52A LTR ERV1 0 1755 1 5361 147 14 12 chr11 43527592 43528134 -107255419 - L1PA15 LINE L1 -625 5540 5001 188 204 23 23 chr11 43528587 43528631 -107254922 - MIR SINE MIR -142 120 77 291 306 92 53 chr11 43528810 43529016 -107254537 + L1ME3A LINE L1 5392 5608 -562 1163 257 83 32 chr11 43529024 43529467 -107254086 + L1ME3A LINE L1 5695 6160 -10 356 343 28 0 chr11 43529592 43529700 -107253853 + L2 LINE L2 3133 3243 -29 1635 279 101 13 chr11 43530769 43531314 -107252239 - MLT1E LTR MaLR 0 593 1 27 0 0 0 chr11 43532787 43532814 -107250739 + AT_rich Low_complexity Low_complexity 1 27 0 297 75 0 0 chr11 43532841 43532881 -107250672 + (T)n Simple_repeat Simple_repeat 1 40 0 201 302 60 78 chr11 43533336 43533452 -107250101 - MER5A DNA MER1_type -75 114 1 3684 76 66 0 chr11 43533546 43534062 -107249491 + L1PA8 LINE L1 5566 6115 -57 354 343 0 11 chr11 43534138 43534281 -107249272 - MIR SINE MIR -55 153 14 299 258 155 10 chr11 43534458 43534555 -107248998 - L2 LINE L2 -1 3312 3202 450 350 41 68 chr11 43534708 43534965 -107248588 + L2 LINE L2 2504 2743 -571 2050 134 45 31 chr11 43534965 43535324 -107248229 - THE1B LTR MaLR 0 364 1 450 350 41 68 chr11 43535324 43535552 -107248001 + L2 LINE L2 2743 2976 -338 278 346 0 0 chr11 43535554 43535655 -107247898 + L2 LINE L2 3213 3313 0 2295 103 0 0 chr11 43535839 43536141 -107247412 + AluSg SINE Alu 1 302 -8 32 0 0 0 chr11 43536797 43536829 -107246724 + AT_rich Low_complexity Low_complexity 1 32 0 515 228 24 0 chr11 43536833 43536960 -107246593 - L1MB7 LINE L1 -20 6164 6035 * 1237 190 76 20 chr11 43536958 43537468 -107246085 - L1MB7 LINE L1 -586 5588 5060 345 262 103 24 chr11 43538058 43538184 -107245369 + MIR SINE MIR 70 205 -57 205 309 61 61 chr11 43539098 43539213 -107244340 + MIR3 SINE MIR 68 182 -26 240 290 80 57 chr11 43540423 43540599 -107242954 + MIR SINE MIR 80 259 -3 333 304 150 32 chr11 43540663 43540883 -107242670 + MIR SINE MIR 17 262 0 216 0 0 0 chr11 43541309 43541333 -107242220 + (A)n Simple_repeat Simple_repeat 1 24 0 190 217 0 43 chr11 43542683 43542775 -107240778 + (TATATG)n Simple_repeat Simple_repeat 4 91 0 2331 60 17 7 chr11 43544244 43544542 -107239011 - AluY SINE Alu -10 301 1 499 308 47 24 chr11 43544627 43544838 -107238715 - Charlie8 DNA MER1_type -2160 257 42 1143 189 27 8 chr11 43545243 43545503 -107238050 + L1P LINE L1 4924 5188 -958 272 220 240 20 chr11 43545505 43545605 -107237948 - MER34 LTR ERV1 -420 122 1 283 325 150 19 chr11 43546608 43546768 -107236785 + MIR SINE MIR 16 196 -66 276 30 0 0 chr11 43546794 43546827 -107236726 + (TG)n Simple_repeat Simple_repeat 1 33 0 856 217 11 6 chr11 43546899 43547074 -107236479 + AluJb SINE Alu 137 312 0 1116 240 35 41 chr11 43547298 43547763 -107235790 + LTR37A LTR ERV1 4 426 0 25 0 0 0 chr11 43548577 43548602 -107234951 + AT_rich Low_complexity Low_complexity 1 25 0 199 280 80 30 chr11 43548642 43548742 -107234811 + MIR3 SINE MIR 103 207 -1 2161 105 0 16 chr11 43548823 43549137 -107234416 + L1PA10 LINE L1 5807 6115 -53 529 110 0 0 chr11 43549160 43549283 -107234270 - AluY SINE Alu 0 333 211 230 123 62 49 chr11 43549306 43549336 -107234217 + A-rich Low_complexity Low_complexity 1 29 -53 407 80 0 80 chr11 43549336 43549411 -107234142 + L1PA11 LINE L1 6103 6171 -3 230 123 62 49 chr11 43549411 43549461 -107234092 + A-rich Low_complexity Low_complexity 29 82 0 314 80 13 40 chr11 43549719 43549794 -107233759 + (TA)n Simple_repeat Simple_repeat 1 73 0 430 129 24 0 chr11 43549858 43549943 -107233610 + (TA)n Simple_repeat Simple_repeat 1 87 0 216 0 0 0 chr11 43549944 43549968 -107233585 + (TG)n Simple_repeat Simple_repeat 2 25 0 934 209 188 41 chr11 43549984 43550329 -107233224 - MSTD LTR MaLR 0 396 1 410 218 115 0 chr11 43550812 43550899 -107232654 + MER81 DNA DNA 17 113 -1 213 347 41 10 chr11 43552824 43552922 -107230631 + MIR SINE MIR 40 140 -68 223 362 126 0 chr11 43553012 43553139 -107230414 - L2 LINE L2 -5 3267 3125 239 172 0 17 chr11 43553542 43553600 -107229953 + (TATATG)n Simple_repeat Simple_repeat 6 62 0 324 0 0 0 chr11 43555795 43555831 -107227722 + (TG)n Simple_repeat Simple_repeat 2 37 0 27 62 0 0 chr11 43556192 43556240 -107227313 + AT_rich Low_complexity Low_complexity 1 48 0 12891 138 85 17 chr11 43557414 43559666 -107223887 - Tigger1 DNA MER2_type -13 2405 1 318 301 165 51 chr11 43559796 43559972 -107223581 + MIR SINE MIR 41 236 -26 21 57 0 0 chr11 43561161 43561196 -107222357 + AT_rich Low_complexity Low_complexity 1 35 0 23 33 0 0 chr11 43561306 43561336 -107222217 + AT_rich Low_complexity Low_complexity 1 30 0 258 32 0 0 chr11 43562228 43562259 -107221294 + (TA)n Simple_repeat Simple_repeat 2 32 0 531 0 0 0 chr11 43563184 43563243 -107220310 + (TC)n Simple_repeat Simple_repeat 1 59 0 483 358 95 29 chr11 43563257 43563656 -107219897 - L2 LINE L2 -77 3236 2792 1190 211 105 81 chr11 43563656 43564112 -107219441 - MLT1C LTR MaLR 0 467 1 483 358 95 29 chr11 43564112 43564210 -107219343 - L2 LINE L2 -521 2792 2702 525 252 87 90 chr11 43564211 43564310 -107219243 + L1ME1 LINE L1 5902 6000 -166 6291 84 9 5 chr11 43564310 43565356 -107218197 + L1PA8A LINE L1 5078 6131 0 525 252 87 90 chr11 43565356 43565522 -107218031 + L1ME1 LINE L1 6000 6166 0 21 36 0 0 chr11 43566242 43566270 -107217283 + AT_rich Low_complexity Low_complexity 1 28 0 182 300 25 12 chr11 43566494 43566574 -107216979 + MIR SINE MIR 57 137 -125 29 0 0 62 chr11 43566586 43566634 -107216919 + AT_rich Low_complexity Low_complexity 1 45 0 400 298 170 5 chr11 43566704 43566892 -107216661 + L2 LINE L2 3094 3312 -1 1065 62 62 56 chr11 43568376 43568554 -107214999 - AluY SINE Alu -6 305 127 1808 139 55 0 chr11 43568786 43569060 -107214493 + AluSx SINE Alu 1 289 -23 26 0 0 0 chr11 43569072 43569098 -107214455 + AT_rich Low_complexity Low_complexity 1 26 0 24 0 0 0 chr11 43569181 43569205 -107214348 + AT_rich Low_complexity Low_complexity 1 24 0 349 252 43 52 chr11 43569553 43569668 -107213885 - MER81 DNA DNA 0 114 1 249 256 12 37 chr11 43570027 43570109 -107213444 + MIR SINE MIR 31 110 -152 1601 211 44 26 chr11 43570130 43570319 -107213234 + MLT1A1 LTR MaLR 19 218 -147 2133 135 154 0 chr11 43570319 43570690 -107212863 + MSTA LTR MaLR 1 428 0 1601 211 44 26 chr11 43570690 43570841 -107212712 + MLT1A1 LTR MaLR 218 365 0 5265 181 21 8 chr11 43571355 43572454 -107211099 + L1MA4 LINE L1 5189 6298 -2 614 118 0 0 chr11 43572454 43572539 -107211014 + AluSg/x SINE Alu 201 285 -25 273 57 0 0 chr11 43572542 43572577 -107210976 + (TATAA)n Simple_repeat Simple_repeat 5 39 0 235 305 37 24 chr11 43572645 43572727 -107210826 - MIR SINE MIR -170 92 10 195 100 0 0 chr11 43573171 43573201 -107210352 + (ATG)n Simple_repeat Simple_repeat 3 32 0 206 272 141 54 chr11 43573357 43573449 -107210104 - MIR SINE MIR -90 118 19 1589 214 48 30 chr11 43574152 43574611 -107208942 - MLT1C LTR MaLR 0 467 1 216 363 88 0 chr11 43574842 43574955 -107208598 - MIR SINE MIR -120 142 20 27 87 0 0 chr11 43575125 43575194 -107208359 + AT_rich Low_complexity Low_complexity 1 69 0 686 309 91 58 chr11 43576017 43576642 -107206911 - L2 LINE L2 -456 2858 2213 863 228 110 45 chr11 43576822 43577201 -107206352 - L1MC/D LINE L1 -860 5437 5273 188 343 34 41 chr11 43577386 43577532 -107206021 + MIR SINE MIR 62 206 -56 274 313 0 12 chr11 43577656 43577739 -107205814 + CT-rich Low_complexity Low_complexity 5 86 0 327 146 0 0 chr11 43578398 43578453 -107205100 + (GGAA)n Simple_repeat Simple_repeat 2 56 0 1834 164 93 49 chr11 43578539 43578771 -107204782 - MSTB LTR MaLR 0 426 167 2331 111 0 0 chr11 43578771 43579078 -107204475 - AluSx SINE Alu -5 307 1 1834 164 93 49 chr11 43579078 43579253 -107204300 - MSTB LTR MaLR -259 167 1 216 204 0 0 chr11 43579386 43579430 -107204123 + (TAA)n Simple_repeat Simple_repeat 1 44 0 349 0 0 0 chr11 43579615 43579654 -107203899 - MER4D LTR ERV1 -74 798 760 234 176 20 0 chr11 43581552 43581603 -107201950 - L1ME LINE L1 -223 5898 5847 223 372 13 0 chr11 43583266 43583344 -107200209 - L2 LINE L2 -1 3271 3193 323 287 0 0 chr11 43583385 43583472 -107200081 + MIR SINE MIR 170 256 -6 452 284 72 72 chr11 43583646 43583910 -107199643 - MER102b DNA MER1_type -9 332 69 222 335 65 53 chr11 43584123 43584293 -107199260 + MER5B DNA MER1_type 4 175 -3 224 370 62 35 chr11 43584383 43584610 -107198943 + L2 LINE L2 2859 3091 -181 373 188 134 40 chr11 43585984 43586133 -107197420 + L1MC4 LINE L1 7661 7823 -219 294 76 39 0 chr11 43586125 43586176 -107197377 - L1PA8 LINE L1 -8 6164 6095 * 26 50 0 0 chr11 43586176 43586216 -107197337 + AT_rich Low_complexity Low_complexity 1 40 0 388 343 94 52 chr11 43586759 43587394 -107196159 + L2 LINE L2 1698 2359 -955 2176 185 39 14 chr11 43587411 43587827 -107195726 + MSTB LTR MaLR 1 426 0 433 346 176 29 chr11 43588536 43589025 -107194528 - L2 LINE L2 -466 2848 2288 247 333 51 13 chr11 43589059 43589137 -107194416 - MER91A DNA MER1_type 0 196 116 24 0 0 0 chr11 43591315 43591339 -107192214 + AT_rich Low_complexity Low_complexity 1 24 0 392 366 31 31 chr11 43591388 43591645 -107191908 + L3 LINE CR1 278 534 -1043 359 330 200 0 chr11 43591664 43591849 -107191704 + L3 LINE CR1 1243 1464 -113 1294 198 119 44 chr11 43591886 43592406 -107191147 - Charlie1a DNA MER1_type -1 1454 896 384 241 12 0 chr11 43592406 43592489 -107191064 + MER1A DNA MER1_type 1 84 -443 * 3256 123 6 38 chr11 43592462 43592989 -107190564 + MER1A DNA MER1_type 17 529 0 2913 235 47 35 chr11 43592989 43593881 -107189672 - Charlie1a DNA MER1_type -552 903 1 571 257 53 23 chr11 43593885 43594056 -107189497 + MIR SINE MIR 13 188 -74 405 39 0 0 chr11 43594117 43594168 -107189385 + (TA)n Simple_repeat Simple_repeat 2 52 0 1314 177 119 29 chr11 43594288 43594598 -107188955 + MER2 DNA MER2_type 8 345 0 607 316 47 5 chr11 43594906 43595118 -107188435 + MIR SINE MIR 28 248 -14 2388 77 0 13 chr11 43595380 43595693 -107187860 + AluY SINE Alu 1 309 -2 539 22 0 45 chr11 43596673 43596762 -107186791 + (TA)n Simple_repeat Simple_repeat 2 86 0 269 321 168 8 chr11 43596955 43597086 -107186467 + MIR SINE MIR 25 176 -86 306 310 35 44 chr11 43597172 43597375 -107186178 + MIR SINE MIR 15 215 -47 1427 197 60 18 chr11 43597797 43598081 -107185472 - AluJb SINE Alu -6 296 1 357 264 16 16 chr11 43598251 43598380 -107185173 - L1MC4 LINE L1 0 8042 7914 31 0 0 0 chr11 43598404 43598435 -107185118 + AT_rich Low_complexity Low_complexity 1 31 0 308 255 66 9 chr11 43598500 43598606 -107184947 - L1MC4 LINE L1 -242 7800 7689 1113 52 0 0 chr11 43599045 43599181 -107184372 + AluSg/x SINE Alu 175 310 0 207 188 58 58 chr11 43599578 43599647 -107183906 + MIR SINE MIR 147 215 -47 1427 197 60 18 chr11 43600069 43600353 -107183200 - AluJb SINE Alu -6 296 1 357 264 16 16 chr11 43600523 43600652 -107182901 - L1MC4 LINE L1 0 8042 7914 31 0 0 0 chr11 43600676 43600707 -107182846 + AT_rich Low_complexity Low_complexity 1 31 0 2917 3 0 0 chr11 43600874 43601187 -107182366 + AluYb8 SINE Alu 1 313 -5 1088 53 0 0 chr11 43601639 43601771 -107181782 + AluSg/x SINE Alu 177 308 -4 1046 77 35 0 chr11 43602214 43602383 -107181170 + (TTTC)n Simple_repeat Simple_repeat 4 178 0 569 157 21 14 chr11 43602384 43602524 -107181029 + CT-rich Low_complexity Low_complexity 2 142 0 638 238 74 11 chr11 43602644 43602833 -107180720 - MER3 DNA MER1_type -1 208 8 2230 113 45 5 chr11 43602833 43603335 -107180218 - L1PA12 LINE L1 -688 5480 4956 4475 110 8 9 chr11 43603335 43604005 -107179548 + L1PA12 LINE L1 5499 6168 0 320 227 147 0 chr11 43604050 43604125 -107179428 + MER5A DNA MER1_type 10 95 -94 2407 61 0 3 chr11 43605236 43605531 -107178022 - AluSc SINE Alu -15 294 1 704 225 13 20 chr11 43605566 43605717 -107177836 + MIR SINE MIR 51 200 -62 2083 121 0 32 chr11 43607738 43608053 -107175500 + AluSx SINE Alu 6 310 -2 989 231 9 14 chr11 43608078 43608294 -107175259 - MER20 DNA MER1_type -1 218 4 209 404 53 18 chr11 43608384 43608669 -107174884 - L2 LINE L2 -557 2757 2463 264 330 54 77 chr11 43608800 43609021 -107174532 - L2 LINE L2 -859 2455 2240 3066 150 21 4 chr11 43609380 43609866 -107173687 + MER1A DNA MER1_type 31 524 -5 325 248 73 46 chr11 43610909 43611018 -107172535 + MIR SINE MIR 105 216 -46 263 71 100 0 chr11 43611264 43611316 -107172237 - MLT2B3 LTR ERVL 0 554 398 2249 245 14 21 chr11 43611556 43612075 -107171478 - MLT2B3 LTR ERVL -39 515 1 22 0 0 0 chr11 43613010 43613032 -107170521 + AT_rich Low_complexity Low_complexity 1 22 0 200 217 0 0 chr11 43613280 43613326 -107170227 + T-rich Low_complexity Low_complexity 1 46 0 1838 137 128 16 chr11 43613432 43613798 -107169755 - MSTA LTR MaLR 0 428 22 1669 171 82 6 chr11 43613899 43614227 -107169326 + THE1C LTR MaLR 23 375 0 9017 189 16 11 chr11 43614239 43614303 -107169250 - MSTA-int LTR MaLR 0 1651 1589 1948 154 0 0 chr11 43614303 43614589 -107168964 + AluSx SINE Alu 13 298 -14 9017 189 16 11 chr11 43614589 43616166 -107167387 - MSTA-int LTR MaLR -62 1589 1 2108 129 135 5 chr11 43616166 43616545 -107167008 - MSTA LTR MaLR 0 428 1 441 248 113 78 chr11 43616565 43616795 -107166758 - MLT1H LTR MaLR -170 379 142 12195 167 29 43 chr11 43616880 43619323 -107164230 - Tigger1 DNA MER2_type -11 2407 1 397 138 25 0 chr11 43619490 43619570 -107163983 + CT-rich Low_complexity Low_complexity 3 84 0 211 224 61 0 chr11 43619671 43619720 -107163833 + L2 LINE L2 3023 3074 -198 7771 37 3 0 chr11 43620627 43622350 -107161203 + L1PA4 LINE L1 4426 6152 -3 506 298 0 13 chr11 43622491 43622649 -107160904 - MIR SINE MIR 0 262 107 217 284 75 0 chr11 43623215 43623282 -107160271 + MIR SINE MIR 53 124 -138 946 220 98 31 chr11 43624290 43624690 -107158863 - MLT1D LTR MaLR 0 505 1 388 278 10 0 chr11 43624743 43624840 -107158713 - MER58A DNA MER1_type -8 99 2 369 145 0 0 chr11 43626564 43626626 -107156927 + (TTCC)n Simple_repeat Simple_repeat 3 64 0 390 248 8 66 chr11 43627303 43627424 -107156129 + MER81 DNA DNA 1 114 0 393 290 155 19 chr11 43627535 43627690 -107155863 + MER5B DNA MER1_type 3 178 0 538 257 27 59 chr11 43628325 43628475 -107155078 - MIR SINE MIR -28 234 90 1891 165 16 27 chr11 43628475 43628844 -107154709 - MLT1A1 LTR MaLR 0 365 1 538 257 27 59 chr11 43628844 43628880 -107154673 - MIR SINE MIR -172 90 54 201 293 0 0 chr11 43629238 43629296 -107154257 + GA-rich Low_complexity Low_complexity 1 58 0 236 186 0 100 chr11 43630133 43630203 -107153350 - MIR SINE MIR -75 187 125 321 26 0 0 chr11 43633790 43633828 -107149725 + (GA)n Simple_repeat Simple_repeat 2 39 0 * 324 0 0 0 chr11 43633827 43633863 -107149690 + (TG)n Simple_repeat Simple_repeat 2 37 0 211 328 40 48 chr11 43634447 43634572 -107148981 + MIR SINE MIR 21 144 -64 468 303 83 18 chr11 43634637 43634855 -107148698 - MIR SINE MIR 0 262 31 298 231 43 103 chr11 43635738 43635972 -107147581 + L1ME4a LINE L1 5798 6017 -104 5055 33 0 0 chr11 43636714 43637323 -107146230 - L1P LINE L1 -3877 2269 1661 7872 14 0 0 chr11 43637323 43638346 -107145207 + L1PA3 LINE L1 5133 6155 0 1198 242 98 105 chr11 43638671 43639373 -107144180 + L1MEc LINE L1 36 732 -5664 1021 272 6 6 chr11 43639673 43640008 -107143545 - L1 LINE L1 -3236 2910 2576 4741 142 5 17 chr11 43640009 43640777 -107142776 + L1PA16 LINE L1 5399 6157 -9 2379 47 33 10 chr11 43641395 43641695 -107141858 + AluY SINE Alu 3 309 -2 205 290 140 21 chr11 43642705 43642798 -107140755 - MIR SINE MIR -118 144 41 389 336 96 5 chr11 43643313 43643521 -107140032 + MIR SINE MIR 8 234 -28 187 317 108 25 chr11 43643520 43643640 -107139913 - MIR SINE MIR -15 247 118 * 1230 302 58 11 chr11 43644361 43644795 -107138758 + LTR16B LTR ERVL 11 464 0 245 353 29 59 chr11 43644824 43644994 -107138559 + L2 LINE L2 3146 3310 -3 183 349 107 20 chr11 43646294 43646443 -107137110 + MIR SINE MIR 79 240 -22 * 565 220 30 60 chr11 43646401 43646569 -107136984 - MIR SINE MIR 0 262 100 184 267 22 0 chr11 43646606 43646651 -107136902 + L2 LINE L2 3209 3254 -18 245 394 68 0 chr11 43646775 43646907 -107136646 - L2 LINE L2 -39 3233 3093 183 80 0 0 chr11 43647191 43647216 -107136337 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 24 32 0 0 chr11 43647704 43647735 -107135818 + AT_rich Low_complexity Low_complexity 1 31 0 1585 156 47 0 chr11 43648757 43648873 -107134680 + AluJo SINE Alu 1 110 -202 180 0 0 0 chr11 43648873 43648893 -107134660 + (CAAA)n Simple_repeat Simple_repeat 4 23 0 1585 156 47 0 chr11 43648893 43649051 -107134502 + AluJo SINE Alu 110 288 -24 426 39 0 0 chr11 43649069 43649121 -107134432 + (CA)n Simple_repeat Simple_repeat 2 53 0 2735 131 19 19 chr11 43649224 43649698 -107133855 - L1PA16 LINE L1 0 6166 5693 545 317 48 10 chr11 43649870 43650078 -107133475 + MIR SINE MIR 44 259 -3 2472 60 3 0 chr11 43650078 43650377 -107133176 + AluY SINE Alu 1 300 -11 486 0 0 0 chr11 43650647 43650701 -107132852 + (TA)n Simple_repeat Simple_repeat 1 54 0 28 61 0 0 chr11 43651622 43651671 -107131882 + AT_rich Low_complexity Low_complexity 1 49 0 6833 31 5 1 chr11 43651684 43653156 -107130397 - L1PA4 LINE L1 -121 6034 4558 223 348 71 22 chr11 43654225 43654409 -107129144 + MIR SINE MIR 41 233 -29 216 328 153 21 chr11 43654932 43655121 -107128432 + MIR SINE MIR 13 226 -36 192 235 162 15 chr11 43656552 43656620 -107126933 - L2 LINE L2 -4 3268 3191 2193 101 7 3 chr11 43657377 43657674 -107125879 - AluSq SINE Alu -15 298 1 299 350 44 12 chr11 43657826 43657986 -107125567 + MIR SINE MIR 72 236 -26 3229 172 41 27 chr11 43658086 43658147 -107125406 + Tigger3b DNA MER2_type 12 71 -2957 4204 84 39 3 chr11 43658147 43658731 -107124822 - LTR14B LTR ERVK 0 608 4 3229 172 41 27 chr11 43658731 43659346 -107124207 + Tigger3b DNA MER2_type 71 701 -2327 704 139 0 0 chr11 43659346 43659468 -107124085 + L1MA4 LINE L1 6165 6286 -14 3229 172 41 27 chr11 43659468 43659499 -107124054 + Tigger3b DNA MER2_type 701 730 -501 425 179 0 0 chr11 43659510 43659577 -107123976 + AluS SINE Alu 1 67 -246 1516 265 103 19 chr11 43709794 43710396 -107073157 + MER20B DNA MER1_type 6 671 -112 219 88 0 0 chr11 43710396 43710430 -107073123 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1516 265 103 19 chr11 43710430 43710498 -107073055 + MER20B DNA MER1_type 671 732 -51 808 128 7 54 chr11 43710659 43710808 -107072745 - FRAM SINE Alu -13 163 22 24 85 0 0 chr11 43710845 43710904 -107072649 + AT_rich Low_complexity Low_complexity 1 59 0 331 350 26 0 chr11 43711617 43711767 -107071786 + L2 LINE L2 2853 3006 -307 338 398 27 16 chr11 43711767 43711953 -107071600 + MER91A DNA MER1_type 1 188 -8 329 234 175 19 chr11 43711987 43712141 -107071412 + L2 LINE L2 3030 3207 -106 2225 80 7 3 chr11 43712390 43712679 -107070874 + AluY SINE Alu 1 290 -21 1390 41 17 0 chr11 43712778 43712950 -107070603 + LTR17 LTR ERV1 152 326 -454 297 109 0 0 chr11 43712950 43712996 -107070557 + (A)n Simple_repeat Simple_repeat 1 46 0 455 307 73 13 chr11 43712997 43713297 -107070256 - MER31-int LTR ERV1 -2163 2773 2456 197 337 69 0 chr11 43713516 43713617 -107069936 + MIR SINE MIR 77 184 -78 2112 145 13 26 chr11 43715132 43715511 -107068042 - THE1C LTR MaLR -1 374 1 2544 51 0 13 chr11 43715516 43715827 -107067726 - AluY SINE Alu -4 307 1 708 258 40 27 chr11 43716583 43716808 -107066745 + L2 LINE L2 3085 3312 -1 180 0 0 0 chr11 43717080 43717100 -107066453 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 185 260 312 0 chr11 43717121 43717198 -107066355 - L2 LINE L2 -47 3225 3125 1094 233 78 3 chr11 43717336 43717619 -107065934 - L1ME1 LINE L1 -297 5869 5566 2084 131 39 28 chr11 43717669 43718027 -107065526 + THE1B LTR MaLR 3 364 0 303 167 0 0 chr11 43718027 43718075 -107065478 + MLT1C LTR MaLR 420 467 0 1560 258 68 29 chr11 43718075 43718775 -107064778 - L1ME1 LINE L1 -743 5403 4691 564 168 13 7 chr11 43719384 43719539 -107064014 + (TA)n Simple_repeat Simple_repeat 2 157 0 244 289 35 136 chr11 43720142 43720236 -107063317 + MLT1I LTR MaLR 1 103 -306 1642 189 14 3 chr11 43720236 43720533 -107063020 - AluJb SINE Alu -8 304 5 244 289 35 136 chr11 43720533 43720666 -107062887 + MLT1I LTR MaLR 103 205 -204 304 340 92 0 chr11 43721127 43721268 -107062285 + L2 LINE L2 2919 3072 -241 1709 137 7 33 chr11 43721291 43721591 -107061962 - THE1B LTR MaLR 0 364 73 697 234 74 27 chr11 43721866 43722123 -107061430 + L1MEc LINE L1 1645 1913 -4483 1206 275 52 39 chr11 43722141 43722363 -107061190 + L1MEc LINE L1 1868 2086 -4129 1914 127 68 3 chr11 43722363 43722655 -107060898 + AluSx SINE Alu 1 311 -1 1206 275 52 39 chr11 43722655 43723134 -107060419 + L1MEc LINE L1 2086 2547 -3668 1163 260 0 6 chr11 43723187 43723529 -107060024 + L1MEc LINE L1 2651 2990 -3225 629 201 28 35 chr11 43723535 43723679 -107059874 - MLT1A1 LTR MaLR -143 222 80 1351 245 56 49 chr11 43723680 43724200 -107059353 - MER39 LTR ERV1 0 707 1 447 121 15 0 chr11 43724200 43724266 -107059287 - MLT1A2 LTR MaLR -291 83 17 1157 150 47 0 chr11 43724472 43724665 -107058888 + MER2 DNA MER2_type 1 202 -143 22 0 0 0 chr11 43724701 43724723 -107058830 + AT_rich Low_complexity Low_complexity 1 22 0 322 292 50 17 chr11 43724971 43725091 -107058462 - MIR SINE MIR -10 252 129 31 0 0 0 chr11 43725114 43725145 -107058408 + AT_rich Low_complexity Low_complexity 1 31 0 211 263 13 0 chr11 43726939 43727015 -107056538 + (TG)n Simple_repeat Simple_repeat 1 77 0 249 299 65 9 chr11 43730969 43731076 -107052477 + MIR SINE MIR 94 206 -56 27 29 0 0 chr11 43731583 43731617 -107051936 + AT_rich Low_complexity Low_complexity 1 34 0 305 298 89 16 chr11 43731754 43731878 -107051675 + MIR SINE MIR 98 230 -32 186 43 0 0 chr11 43733570 43733593 -107049960 + (CA)n Simple_repeat Simple_repeat 2 24 0 314 275 36 58 chr11 43734343 43734481 -107049072 - MIR SINE MIR -109 153 19 261 183 167 67 chr11 43736055 43736175 -107047378 - MIR SINE MIR -1 261 130 2187 120 3 0 chr11 43736363 43736664 -107046889 + AluSq SINE Alu 1 302 -11 183 42 0 0 chr11 43736826 43736850 -107046703 + (A)n Simple_repeat Simple_repeat 1 24 0 200 128 26 26 chr11 43738055 43738094 -107045459 - MIR SINE MIR -29 233 195 273 98 0 0 chr11 43738103 43738144 -107045409 + (CA)n Simple_repeat Simple_repeat 1 41 0 204 389 11 0 chr11 43738759 43738849 -107044704 + MIR SINE MIR 158 248 -14 23 33 0 0 chr11 43738858 43738888 -107044665 + AT_rich Low_complexity Low_complexity 1 30 0 611 256 34 23 chr11 43740426 43740602 -107042951 - MIR SINE MIR -70 192 15 665 279 113 78 chr11 43740931 43741446 -107042107 + MLT1H1 LTR MaLR 18 555 0 218 250 0 0 chr11 43741676 43741728 -107041825 - L2 LINE L2 0 3313 3262 237 65 0 0 chr11 43741822 43741853 -107041700 + (CA)n Simple_repeat Simple_repeat 2 32 0 365 414 7 26 chr11 43741974 43742166 -107041387 - MIR SINE MIR -69 139 3 2355 92 3 0 chr11 43742618 43742913 -107040640 + AluSp SINE Alu 2 297 -16 1817 188 9 3 chr11 43743201 43743542 -107040011 + MER2 DNA MER2_type 2 344 0 1963 136 13 22 chr11 43743797 43744169 -107039384 + AluSq SINE Alu 1 369 0 1644 195 3 7 chr11 43744183 43744491 -107039062 - AluJb SINE Alu -2 310 4 180 0 0 0 chr11 43744610 43744630 -107038923 + (A)n Simple_repeat Simple_repeat 1 20 0 234 0 0 0 chr11 43744644 43744670 -107038883 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 2725 42 0 0 chr11 43744951 43745261 -107038292 + AluY SINE Alu 1 310 -1 377 303 98 25 chr11 43745353 43745630 -107037923 + L1ME LINE L1 5484 5780 -341 1295 207 58 55 chr11 43746749 43747112 -107036441 - THE1C LTR MaLR -11 364 1 243 313 119 34 chr11 43747302 43747478 -107036075 + L2 LINE L2 2524 2714 -600 1291 194 26 47 chr11 43747478 43747615 -107035938 + L1PB4 LINE L1 4927 5065 -1086 198 0 0 0 chr11 43747615 43747637 -107035916 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 1291 194 26 47 chr11 43747637 43747898 -107035655 + L1PB4 LINE L1 5065 5319 -832 4437 147 60 12 chr11 43748005 43748803 -107034750 + L1PB4 LINE L1 5319 6154 -2 848 140 15 7 chr11 43749407 43749543 -107034010 - AluSq/x SINE Alu -175 137 1 303 161 0 0 chr11 43749852 43749908 -107033645 + (TG)n Simple_repeat Simple_repeat 2 57 0 2064 122 7 0 chr11 43751088 43751375 -107032178 - AluSg SINE Alu -21 289 1 234 329 14 0 chr11 43751728 43751801 -107031752 + MIR SINE MIR 189 262 0 218 278 19 0 chr11 43752809 43752863 -107030690 - MIR SINE MIR -64 144 90 293 258 0 54 chr11 43753121 43753214 -107030339 - MER5A DNA MER1_type -98 91 4 247 115 77 19 chr11 43753407 43753459 -107030094 - MLT2A2 LTR ERVL 0 453 399 180 0 0 0 chr11 43753476 43753496 -107030057 + (CA)n Simple_repeat Simple_repeat 2 21 0 2904 77 39 0 chr11 43753496 43753884 -107029669 - MLT2A2 LTR ERVL -50 403 1 180 0 0 0 chr11 43755644 43755664 -107027889 + (CA)n Simple_repeat Simple_repeat 2 21 0 427 298 227 5 chr11 43757050 43757248 -107026305 - MIR SINE MIR 0 262 21 252 59 0 0 chr11 43757447 43757481 -107026072 + (TTTTTA)n Simple_repeat Simple_repeat 2 35 0 2708 87 3 21 chr11 43757937 43758317 -107025236 - THE1C LTR MaLR 0 375 3 291 333 65 25 chr11 43758806 43759007 -107024546 + L2 LINE L2 2306 2514 -800 464 334 91 54 chr11 43759046 43759173 -107024380 + L2 LINE L2 2736 2857 -456 3055 80 11 20 chr11 43759173 43759625 -107023928 - LTR7 LTR ERV1 -2 448 1 464 334 91 54 chr11 43759625 43760014 -107023539 + L2 LINE L2 2857 3295 -18 229 313 91 80 chr11 43760214 43760489 -107023064 + MLT1H1 LTR MaLR 1 278 -252 388 281 150 0 chr11 43760495 43760650 -107022903 + MLT1H1 LTR MaLR 383 555 0 283 354 41 37 chr11 43762847 43763090 -107020463 - MLT1L LTR MaLR 0 615 372 750 137 0 0 chr11 43763233 43763350 -107020203 - THE1B LTR MaLR 0 364 248 593 106 160 0 chr11 43763349 43763443 -107020110 - THE1B LTR MaLR -266 109 1 * 202 381 7 20 chr11 43763661 43763808 -107019745 + L2 LINE L2 2626 2770 -544 188 340 66 9 chr11 43763936 43764042 -107019511 + L2 LINE L2 2765 2876 -438 1386 271 98 22 chr11 43764581 43765119 -107018434 - MLT1L LTR MaLR 0 615 37 643 268 138 42 chr11 43766085 43766324 -107017229 - MIR SINE MIR 0 262 1 507 274 119 46 chr11 43766422 43766641 -107016912 - MIR SINE MIR -10 252 18 450 313 46 35 chr11 43767419 43767678 -107015875 + MIR SINE MIR 1 262 0 272 290 154 19 chr11 43768480 43768642 -107014911 - MIR SINE MIR -73 189 6 216 307 44 18 chr11 43768647 43768761 -107014792 - L3 LINE CR1 -761 816 700 229 128 0 0 chr11 43769289 43769328 -107014225 + L1MC4 LINE L1 6663 6701 -1341 183 129 0 0 chr11 43769331 43769362 -107014191 + (TA)n Simple_repeat Simple_repeat 1 31 0 280 315 79 16 chr11 43770822 43770949 -107012604 + MIR SINE MIR 20 154 -108 223 263 150 0 chr11 43771528 43771608 -107011945 - L3 LINE CR1 -1 1576 1485 374 314 36 36 chr11 43771735 43771875 -107011678 - MIR3 SINE MIR -48 160 21 183 156 0 0 chr11 43772439 43772471 -107011082 + T-rich Low_complexity Low_complexity 1 32 0 352 291 159 21 chr11 43773116 43773305 -107010248 - MIR SINE MIR -17 245 31 232 313 36 12 chr11 43773441 43773524 -107010029 - MIR SINE MIR -133 129 45 280 261 49 70 chr11 43773844 43773986 -107009567 - MIR SINE MIR 0 262 124 222 174 0 0 chr11 43774229 43774275 -107009278 + A-rich Low_complexity Low_complexity 1 46 0 4491 170 32 13 chr11 43774825 43775673 -107007880 - MER6 DNA MER2_type -1 864 1 2554 59 0 0 chr11 43775848 43776153 -107007400 + AluY SINE Alu 1 305 -6 248 274 0 26 chr11 43776443 43776556 -107006997 - L1MC5 LINE L1 -748 7213 7104 2320 62 0 86 chr11 43776556 43776893 -107006660 + AluY SINE Alu 1 308 -3 416 274 142 9 chr11 43777653 43777891 -107005662 + MIR SINE MIR 2 246 -16 315 329 70 24 chr11 43778411 43778624 -107004929 + MIR SINE MIR 10 232 -30 294 348 43 0 chr11 43779108 43779246 -107004307 + MIR SINE MIR 48 191 -71 1799 199 0 0 chr11 43779692 43779999 -107003554 + AluJb SINE Alu 1 307 -5 429 279 23 23 chr11 43780008 43780137 -107003416 + MIR SINE MIR 37 165 -97 420 20 0 0 chr11 43780539 43780588 -107002965 + (TG)n Simple_repeat Simple_repeat 1 49 0 201 315 34 0 chr11 43781159 43781248 -107002305 - L3b LINE CR1 -385 1198 1107 260 333 71 7 chr11 43781364 43781505 -107002048 + L2 LINE L2 3160 3309 -4 372 71 0 0 chr11 43782731 43782787 -107000766 + (TG)n Simple_repeat Simple_repeat 2 57 0 228 35 0 0 chr11 43782795 43782824 -107000729 + (CA)n Simple_repeat Simple_repeat 2 30 0 190 250 0 0 chr11 43783614 43783650 -106999903 - L2 LINE L2 -2925 389 354 298 364 40 30 chr11 43784312 43784510 -106999043 + MIR SINE MIR 49 248 -14 216 271 17 17 chr11 43784775 43784834 -106998719 + L2 LINE L2 3205 3263 -9 213 344 52 39 chr11 43785728 43785882 -106997671 + L2 LINE L2 3139 3294 -19 706 250 57 10 chr11 43785929 43786121 -106997432 + MER3 DNA MER1_type 9 209 0 244 298 58 29 chr11 43786979 43787083 -106996470 - MIR SINE MIR -19 243 137 208 264 0 0 chr11 43788530 43788583 -106994970 + (TTA)n Simple_repeat Simple_repeat 1 53 0 227 290 16 0 chr11 43788583 43788645 -106994908 + MIR SINE MIR 95 157 -105 21 0 0 0 chr11 43789410 43789431 -106994122 + AT_rich Low_complexity Low_complexity 1 21 0 25 65 0 0 chr11 43789570 43789616 -106993937 + AT_rich Low_complexity Low_complexity 1 46 0 2695 157 18 7 chr11 43789635 43790082 -106993471 - Tigger2 DNA MER2_type -2 2716 2265 399 147 29 0 chr11 43790063 43790131 -106993422 - Tigger2 DNA MER2_type -2648 70 1 * 465 316 122 15 chr11 43790145 43790341 -106993212 + MIR SINE MIR 1 217 -45 1153 179 0 0 chr11 43790353 43790571 -106992982 - L1P LINE L1 -909 5237 5020 821 116 0 0 chr11 43790571 43790688 -106992865 + L1PA13 LINE L1 6038 6158 -5 1248 113 80 5 chr11 43791143 43791355 -106992198 + MER30 DNA MER1_type 3 230 0 238 274 71 12 chr11 43792601 43792685 -106990868 - MIR SINE MIR 0 262 174 359 306 70 13 chr11 43793086 43793243 -106990310 - MIR SINE MIR -79 183 18 988 279 50 9 chr11 43794371 43794711 -106988842 - MLT1C LTR MaLR -61 406 53 203 158 79 0 chr11 43795776 43795814 -106987739 + L2 LINE L2 3265 3305 -8 370 215 45 79 chr11 43795845 43796022 -106987531 - L1MA9 LINE L1 -185 6106 5936 22 0 0 0 chr11 43796294 43796316 -106987237 + AT_rich Low_complexity Low_complexity 1 22 0 556 334 32 99 chr11 43796368 43796903 -106986650 - L2 LINE L2 0 3272 2779 209 108 0 27 chr11 43797029 43797066 -106986487 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 21 36 0 0 chr11 43797198 43797226 -106986327 + AT_rich Low_complexity Low_complexity 1 28 0 224 326 23 0 chr11 43797983 43798069 -106985484 + MIR SINE MIR 103 190 -72 986 168 74 5 chr11 43800771 43800973 -106982580 + L1MD3 LINE L1 7766 7981 -14 197 105 0 26 chr11 43801173 43801211 -106982342 + (CATA)n Simple_repeat Simple_repeat 2 38 0 25 51 0 0 chr11 43801256 43801295 -106982258 + AT_rich Low_complexity Low_complexity 1 39 0 515 272 64 79 chr11 43801606 43802165 -106981388 - L1MEc LINE L1 -3097 3118 2568 475 226 35 0 chr11 43802691 43802806 -106980747 - MER31-int LTR ERV1 -3789 1147 1029 425 252 126 0 chr11 43803037 43803156 -106980397 - MER92B LTR ERV1 -502 134 1 623 323 0 0 chr11 43803156 43803323 -106980230 - MIR SINE MIR -88 174 8 297 0 0 0 chr11 43803430 43803463 -106980090 + (TAAA)n Simple_repeat Simple_repeat 3 35 0 180 216 0 0 chr11 43803568 43803619 -106979934 + (TA)n Simple_repeat Simple_repeat 1 51 0 1487 201 24 30 chr11 43804065 43804266 -106979287 - MER2 DNA MER2_type -14 331 131 3899 191 41 24 chr11 43804266 43804889 -106978664 + MER6 DNA MER2_type 1 644 -221 1733 181 3 13 chr11 43804889 43805188 -106978365 - AluJb SINE Alu -10 302 7 3899 191 41 24 chr11 43805188 43805414 -106978139 + MER6 DNA MER2_type 644 865 0 1487 201 24 30 chr11 43805414 43805545 -106978008 - MER2 DNA MER2_type -214 131 1 285 29 0 0 chr11 43805813 43805847 -106977706 + (A)n Simple_repeat Simple_repeat 1 34 0 237 301 130 24 chr11 43806163 43806286 -106977267 - MIR SINE MIR -49 213 78 670 142 71 61 chr11 43807502 43807699 -106975854 - THE1B LTR MaLR -165 199 1 234 310 28 48 chr11 43807712 43807857 -106975696 + L2 LINE L2 3112 3253 -60 1613 183 0 53 chr11 43807891 43808214 -106975339 + AluJb SINE Alu 1 306 -6 2254 281 47 23 chr11 43808254 43808965 -106974588 + L1MEc LINE L1 35 772 -5624 1526 98 5 49 chr11 43808965 43809189 -106974364 + AluSg/x SINE Alu 90 303 -9 2254 281 47 23 chr11 43809189 43809349 -106974204 + L1MEc LINE L1 772 927 -5469 265 305 69 5 chr11 43809900 43810103 -106973450 - L1MEc LINE L1 -3821 2394 2179 3452 172 43 3 chr11 43810425 43811070 -106972483 + LTR51 LTR ERV1 1 671 0 307 276 51 10 chr11 43811271 43811369 -106972184 - L2 LINE L2 0 3313 3212 253 321 132 26 chr11 43811369 43811787 -106971766 - L1MEc LINE L1 -4676 1720 1259 263 179 15 0 chr11 43811851 43811918 -106971635 + (TA)n Simple_repeat Simple_repeat 2 69 0 433 309 70 62 chr11 43812093 43812177 -106971376 - L1MEc LINE L1 -5191 1014 932 2068 138 0 3 chr11 43812177 43812482 -106971071 - AluSg SINE Alu -6 304 1 433 309 70 62 chr11 43812482 43812879 -106970674 - L1MEc LINE L1 -5273 932 529 201 108 0 0 chr11 43812979 43813016 -106970537 + (CAGA)n Simple_repeat Simple_repeat 1 37 0 207 139 0 0 chr11 43813830 43813866 -106969687 + (TG)n Simple_repeat Simple_repeat 2 37 0 235 317 0 0 chr11 43814806 43814907 -106968646 + A-rich Low_complexity Low_complexity 1 101 0 277 297 40 10 chr11 43816520 43816621 -106966932 + L2 LINE L2 3168 3271 -1 259 191 60 0 chr11 43816918 43817002 -106966551 + (TCTA)n Simple_repeat Simple_repeat 4 92 0 203 295 32 0 chr11 43817048 43817143 -106966410 + (TA)n Simple_repeat Simple_repeat 2 99 0 26 30 0 0 chr11 43817794 43817827 -106965726 + AT_rich Low_complexity Low_complexity 1 33 0 22 35 0 0 chr11 43817939 43817968 -106965585 + AT_rich Low_complexity Low_complexity 1 29 0 185 321 86 12 chr11 43817973 43818054 -106965499 + L2 LINE L2 2926 3012 -260 30 27 0 0 chr11 43818570 43818607 -106964946 + AT_rich Low_complexity Low_complexity 1 37 0 1649 178 31 7 chr11 43818688 43818975 -106964578 - AluJb SINE Alu -18 294 1 324 302 77 32 chr11 43818999 43819403 -106964150 - L1MC5 LINE L1 -204 7757 7336 263 308 8 68 chr11 43821383 43821500 -106962053 + MIR SINE MIR 82 191 -71 2238 75 0 31 chr11 43821655 43821974 -106961579 - AluY SINE Alu -2 309 1 201 39 0 0 chr11 43822756 43822782 -106960771 + (TTTTTA)n Simple_repeat Simple_repeat 4 29 0 1406 191 16 40 chr11 43822987 43823127 -106960426 + AluJo SINE Alu 1 143 -169 2295 107 11 8 chr11 43823127 43823481 -106960072 - THE1A LTR MaLR 0 355 1 1406 191 16 40 chr11 43823481 43823644 -106959909 + AluJo SINE Alu 143 297 -15 505 330 47 43 chr11 43823883 43824162 -106959391 + L2 LINE L2 2583 2862 -452 1235 108 0 47 chr11 43824268 43824481 -106959072 - L1PA13 LINE L1 0 6163 5961 217 154 0 58 chr11 43826164 43826216 -106957337 + (CATATA)n Simple_repeat Simple_repeat 3 51 0 198 305 16 78 chr11 43826386 43826514 -106957039 - MER5A DNA MER1_type -23 166 47 184 337 59 40 chr11 43826793 43826894 -106956659 + MIR SINE MIR 48 150 -112 1746 159 98 17 chr11 43826900 43827259 -106956294 - MLT1B LTR MaLR -2 388 1 32 0 0 0 chr11 43827314 43827346 -106956207 + AT_rich Low_complexity Low_complexity 1 32 0 624 27 0 0 chr11 43827575 43827649 -106955904 + (TCTA)n Simple_repeat Simple_repeat 1 74 0 506 297 74 39 chr11 43827774 43828003 -106955550 - MIR SINE MIR -14 248 12 3258 152 10 0 chr11 43828292 43828813 -106954740 - MER1A DNA MER1_type -1 526 1 2145 98 11 0 chr11 43829258 43829544 -106954009 + AluSx SINE Alu 7 295 -17 1281 206 157 38 chr11 43830793 43831244 -106952309 + MLT1D LTR MaLR 1 505 0 21 0 0 0 chr11 43831863 43831884 -106951669 + AT_rich Low_complexity Low_complexity 1 21 0 337 354 39 43 chr11 43832995 43833269 -106950284 + L2 LINE L2 2771 3058 -214 1689 173 0 3 chr11 43833619 43833928 -106949625 - AluSx SINE Alu 0 308 1 426 339 60 6 chr11 43834003 43834186 -106949367 + MIR SINE MIR 13 205 -57 5297 195 59 7 chr11 43834318 43836035 -106947518 - L1MC1 LINE L1 -18 6315 4526 198 313 52 21 chr11 43836533 43836629 -106946924 - MIR SINE MIR -78 184 86 180 152 0 0 chr11 43836671 43836704 -106946849 + CT-rich Low_complexity Low_complexity 2 34 0 286 219 14 14 chr11 43836787 43836860 -106946693 + MER103 DNA DNA 31 103 -63 285 254 28 0 chr11 43838048 43838119 -106945434 + MER116 DNA Mariner 3 75 -5 13667 230 35 23 chr11 43838584 43842541 -106941012 - L1PA12 LINE L1 -744 6053 2083 414 57 0 0 chr11 43842556 43842609 -106940944 + (TG)n Simple_repeat Simple_repeat 2 54 0 1371 207 0 26 chr11 43842614 43842884 -106940669 - AluJo SINE Alu -49 263 1 1394 198 9 27 chr11 43842884 43843218 -106940335 - L1PA12 LINE L1 -4711 2076 1749 2521 74 0 0 chr11 43843292 43843602 -106939951 - AluY SINE Alu 0 311 2 1839 147 76 34 chr11 43843633 43844013 -106939540 + Charlie1b DNA MER1_type 1 396 -127 1973 239 28 4 chr11 43844024 43844332 -106939221 - L1PA12 LINE L1 -5026 1761 1437 230 71 0 24 chr11 43844332 43844374 -106939179 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 1973 239 28 4 chr11 43844374 43844533 -106939020 - L1PA12 LINE L1 -5350 1437 1283 * 2139 322 54 26 chr11 43844503 43845280 -106938273 - L1PA12 LINE L1 -5988 799 1 24 0 0 0 chr11 43845428 43845452 -106938101 + AT_rich Low_complexity Low_complexity 1 24 0 255 251 22 0 chr11 43845879 43845946 -106937607 + MIR SINE MIR 84 140 -68 409 283 35 0 chr11 43847060 43847205 -106936348 + MER103 DNA DNA 17 166 0 384 385 27 23 chr11 43848090 43848350 -106935203 - L2 LINE L2 -474 2840 2580 2431 50 20 0 chr11 43849313 43849610 -106933943 + AluY SINE Alu 1 303 -8 234 0 0 0 chr11 43850440 43850466 -106933087 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1079 226 109 44 chr11 43850609 43851039 -106932514 + MLT1C LTR MaLR 6 463 -4 1970 142 0 0 chr11 43851089 43851398 -106932155 - AluSx SINE Alu 0 311 3 543 334 28 14 chr11 43852996 43853221 -106930332 - MIR SINE MIR 0 262 35 307 319 31 62 chr11 43853605 43853765 -106929788 + MIR SINE MIR 57 211 -51 201 74 0 0 chr11 43854866 43854893 -106928660 + (TTTTA)n Simple_repeat Simple_repeat 1 27 0 6012 108 9 0 chr11 43855117 43856429 -106927124 - L1PA8 LINE L1 -2 6170 4856 1459 207 33 37 chr11 43856489 43856789 -106926764 + AluJo SINE Alu 3 301 -11 227 333 175 0 chr11 43857872 43857992 -106925561 - L2 LINE L2 -3 3269 3129 237 239 11 120 chr11 43858106 43858198 -106925355 - L2 LINE L2 0 3272 3191 218 298 58 84 chr11 43858196 43858387 -106925166 - L2 LINE L2 -36 3277 3092 * 315 0 0 0 chr11 43858936 43858971 -106924582 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1230 201 7 71 chr11 43858973 43859282 -106924271 - AluJo SINE Alu -23 289 1 462 278 139 6 chr11 43861775 43861948 -106921605 - L1M4 LINE L1 -1501 4645 4450 906 163 42 12 chr11 43861955 43862121 -106921432 - MER6B DNA MER2_type -39 171 1 922 262 84 17 chr11 43862179 43862653 -106920900 - L1M4 LINE L1 -1736 4410 3905 1453 253 67 34 chr11 43862656 43863553 -106920000 - L1ME LINE L1 -4135 1945 851 2172 116 3 3 chr11 43863553 43863854 -106919699 - AluSx SINE Alu -11 301 1 1453 253 67 34 chr11 43863854 43863988 -106919565 - L1ME LINE L1 -5229 851 723 473 323 61 50 chr11 43863984 43864800 -106918753 - L1ME LINE L1 -5235 835 12 * 1042 300 70 43 chr11 43865533 43865926 -106917627 - LTR16A LTR ERVL 0 457 49 2235 151 9 86 chr11 43865926 43866329 -106917224 - MSTC LTR MaLR 0 428 64 1983 143 3 3 chr11 43866329 43866630 -106916923 + AluJb SINE Alu 1 301 -11 2235 151 9 86 chr11 43866630 43866690 -106916863 - MSTC LTR MaLR -364 64 1 1042 300 70 43 chr11 43866690 43866736 -106916817 - LTR16A LTR ERVL -408 49 6 180 200 40 60 chr11 43866758 43866808 -106916745 + MIR SINE MIR 123 171 -91 304 93 67 0 chr11 43866830 43866905 -106916648 + (TA)n Simple_repeat Simple_repeat 2 81 0 204 196 59 0 chr11 43867196 43867247 -106916306 + (TTTG)n Simple_repeat Simple_repeat 2 55 0 243 125 0 0 chr11 43867453 43867493 -106916060 + (GA)n Simple_repeat Simple_repeat 2 41 0 231 250 0 0 chr11 43867805 43867865 -106915688 + (TG)n Simple_repeat Simple_repeat 1 60 0 434 304 83 6 chr11 43868231 43868399 -106915154 + MLT1K LTR MaLR 1 181 -407 543 335 60 39 chr11 43868426 43868707 -106914846 + MLT1K LTR MaLR 238 524 -64 303 264 34 91 chr11 43868955 43869163 -106914390 - L1ME LINE L1 -331 5790 5595 2422 181 39 8 chr11 43869165 43869684 -106913869 - L1MA9 LINE L1 -2 6310 5776 21 0 0 0 chr11 43869691 43869712 -106913841 + AT_rich Low_complexity Low_complexity 1 21 0 258 0 0 67 chr11 43869729 43869774 -106913779 + (TA)n Simple_repeat Simple_repeat 2 43 0 430 176 0 0 chr11 43869790 43869869 -106913684 - L1M4 LINE L1 -393 5781 5703 223 343 101 26 chr11 43870239 43870507 -106913046 - L2 LINE L2 -405 2909 2622 310 303 141 40 chr11 43871180 43871378 -106912175 + MIR SINE MIR 10 227 -35 279 114 0 0 chr11 43871729 43871773 -106911780 + (CA)n Simple_repeat Simple_repeat 2 45 0 2550 107 3 8 chr11 43872204 43872570 -106910983 - THE1B LTR MaLR 0 364 1 21 0 0 0 chr11 43872971 43872992 -106910561 + AT_rich Low_complexity Low_complexity 1 21 0 333 241 80 44 chr11 43873386 43873523 -106910030 - MER112 DNA MER1_type -102 158 17 247 136 0 0 chr11 43873615 43873659 -106909894 - L1PA14 LINE L1 -4 6157 6114 1879 175 46 36 chr11 43873659 43874202 -106909351 - MLT2A2 LTR ERVL 0 554 1 956 92 21 0 chr11 43874202 43874344 -106909209 - L1PA14 LINE L1 -43 6118 5974 356 40 20 0 chr11 43874465 43874515 -106909038 + (TTG)n Simple_repeat Simple_repeat 1 51 0 333 0 0 0 chr11 43874571 43874608 -106908945 + (CA)n Simple_repeat Simple_repeat 2 38 0 256 258 165 0 chr11 43875574 43875671 -106907882 - MIR SINE MIR -10 252 140 2196 101 3 16 chr11 43875735 43876042 -106907511 - AluSp SINE Alu -10 303 1 273 372 0 11 chr11 43876092 43876186 -106907367 - MER5A DNA MER1_type -93 96 4 26 0 0 0 chr11 43876301 43876327 -106907226 + AT_rich Low_complexity Low_complexity 1 26 0 313 279 68 72 chr11 43877285 43877550 -106906003 + MLT1I LTR MaLR 145 408 -1 213 349 70 59 chr11 43877696 43877968 -106905585 + L3 LINE CR1 1179 1453 -124 2211 117 0 0 chr11 43878021 43878319 -106905234 + AluSq SINE Alu 1 298 -15 362 284 114 62 chr11 43878410 43878629 -106904924 + MIR SINE MIR 32 262 0 1139 221 89 126 chr11 43878882 43879565 -106903988 + MLT1E2 LTR MaLR 1 626 0 1644 172 10 38 chr11 43880335 43880659 -106902894 + AluJb SINE Alu 1 316 0 550 317 65 30 chr11 43881905 43882400 -106901153 - L1ME4a LINE L1 -55 6066 5555 180 158 0 0 chr11 43882540 43882578 -106900975 + (TAA)n Simple_repeat Simple_repeat 2 39 0 259 324 52 69 chr11 43882856 43883029 -106900524 - MIR SINE MIR -61 201 32 213 65 0 0 chr11 43883892 43883923 -106899630 + (T)n Simple_repeat Simple_repeat 1 31 0 216 222 44 56 chr11 43884314 43884404 -106899149 - MIR SINE MIR -13 249 161 2029 284 11 13 chr11 43884419 43884954 -106898599 - MLT1F LTR MaLR -6 536 3 1826 88 4 0 chr11 43885375 43885625 -106897928 - L1PA6 LINE L1 0 6154 5904 189 250 0 0 chr11 43885809 43885849 -106897704 + L2 LINE L2 3264 3303 -10 291 274 0 40 chr11 43886922 43887046 -106896507 + MLT1L LTR MaLR 397 515 -100 289 330 228 14 chr11 43887581 43887796 -106895757 - MIR SINE MIR 0 262 2 25 31 0 0 chr11 43889344 43889376 -106894177 + AT_rich Low_complexity Low_complexity 1 32 0 617 317 20 45 chr11 43889544 43889814 -106893739 - MIR SINE MIR 0 262 1 344 364 80 34 chr11 43889876 43890115 -106893438 - L3 LINE CR1 -428 1149 900 2061 111 4 0 chr11 43891105 43891384 -106892169 + AluSp SINE Alu 24 303 -10 443 301 86 34 chr11 43893485 43893694 -106889859 + L2 LINE L2 3094 3313 0 475 202 0 0 chr11 43894041 43894140 -106889413 + MER96B DNA MER1_type? 14 112 -305 637 84 0 0 chr11 43894163 43894246 -106889307 - LTR5 LTR ERVK -91 878 796 203 56 56 0 chr11 43894246 43894282 -106889271 + T-rich Low_complexity Low_complexity 2 39 0 6669 60 4 43 chr11 43894282 43895260 -106888293 - SVA Other Other -17 1369 430 1640 97 13 74 chr11 43895667 43896129 -106887424 - SVA Other Other -520 866 433 5291 74 36 54 chr11 43896233 43897060 -106886493 - SVA Other Other -518 868 57 381 22 0 0 chr11 43897060 43897106 -106886447 + (GGGAGA)n Simple_repeat Simple_repeat 1 46 0 649 169 7 14 chr11 43897107 43897249 -106886304 + MER96B DNA MER1_type? 98 238 -179 392 206 14 138 chr11 43898166 43898384 -106885169 + L1MC4 LINE L1 7836 8026 -16 22 0 0 0 chr11 43898642 43898664 -106884889 + AT_rich Low_complexity Low_complexity 1 22 0 323 361 78 10 chr11 43900165 43900370 -106883183 - L3 LINE CR1 -126 1451 1233 2981 178 26 0 chr11 43900969 43901541 -106882012 + L1PB4 LINE L1 5569 6155 -1 298 297 27 118 chr11 43901791 43902087 -106881466 + MLT1J LTR MaLR 127 395 -116 22 35 0 0 chr11 43902251 43902280 -106881273 + AT_rich Low_complexity Low_complexity 1 29 0 2048 244 2 7 chr11 43902724 43903268 -106880285 + L1 LINE L1 3576 4116 -2030 2053 127 0 0 chr11 43903586 43903870 -106879683 + AluSx SINE Alu 16 299 -13 217 222 0 0 chr11 43906211 43906256 -106877297 + (TG)n Simple_repeat Simple_repeat 2 46 0 1993 123 3 3 chr11 43906289 43906621 -106876932 + AluSq SINE Alu 1 332 0 203 162 0 0 chr11 43906930 43906967 -106876586 + A-rich Low_complexity Low_complexity 3 39 0 234 314 50 29 chr11 43906982 43907221 -106876332 - L1ME4a LINE L1 -169 5952 5709 40 37 0 0 chr11 43907613 43907667 -106875886 + AT_rich Low_complexity Low_complexity 1 54 0 549 311 58 40 chr11 43907705 43908033 -106875520 - MLT1I LTR MaLR -7 402 69 24 32 0 0 chr11 43909118 43909149 -106874404 + AT_rich Low_complexity Low_complexity 1 31 0 1223 207 29 88 chr11 43910514 43910925 -106872628 - MLT1B LTR MaLR 0 390 4 1413 207 44 26 chr11 43911140 43911662 -106871891 + MLT1E1 LTR MaLR 22 611 -43 311 275 180 24 chr11 43912096 43912263 -106871290 + L2 LINE L2 3118 3310 -3 480 93 67 0 chr11 43912785 43912834 -106870719 + MADE1 DNA Mariner 1 58 -22 203 61 30 0 chr11 43912834 43912867 -106870686 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 480 93 67 0 chr11 43912867 43912892 -106870661 + MADE1 DNA Mariner 58 80 0 335 181 0 24 chr11 43913447 43913530 -106870023 + CT-rich Low_complexity Low_complexity 2 82 0 2230 90 0 0 chr11 43914169 43914496 -106869057 + AluY SINE Alu 4 330 0 250 354 41 48 chr11 43914767 43914914 -106868639 + L2 LINE L2 3123 3268 -4 406 143 22 0 chr11 43915022 43915113 -106868440 + (TGGA)n Simple_repeat Simple_repeat 4 96 0 200 363 48 0 chr11 43915810 43915956 -106867597 - L2 LINE L2 -1283 2031 1879 382 174 0 0 chr11 43915978 43916047 -106867506 + L1PB4 LINE L1 4490 4558 -1588 866 110 0 0 chr11 43916047 43916165 -106867388 - AluY SINE Alu -3 308 191 3883 197 35 15 chr11 43916165 43917746 -106865807 + L1PB4 LINE L1 4549 6153 -3 2427 66 0 10 chr11 43917757 43918062 -106865491 + AluY SINE Alu 1 302 -9 1867 163 3 0 chr11 43918314 43918603 -106864950 + AluSx SINE Alu 6 295 -17 486 231 142 0 chr11 43918647 43918781 -106864772 + MIR SINE MIR 110 262 0 265 295 0 0 chr11 43919327 43919388 -106864165 + MIR SINE MIR 61 121 -87 1669 201 0 19 chr11 43920174 43920483 -106863070 + AluJb SINE Alu 1 303 -9 27 49 0 0 chr11 43920773 43920814 -106862739 + AT_rich Low_complexity Low_complexity 1 41 0 412 379 57 25 chr11 43921089 43921567 -106861986 + LTR67 LTR ERVL 50 542 -15 1321 199 23 15 chr11 43921766 43922027 -106861526 + Tigger7 DNA MER2_type 1 263 -2224 346 217 120 0 chr11 43922020 43922112 -106861441 + Tigger7 DNA MER2_type 2384 2486 -1 * 443 305 39 13 chr11 43923953 43924107 -106859446 - MIR SINE MIR -102 160 3 258 188 72 14 chr11 43924671 43924740 -106858813 + (CAGAGA)n Simple_repeat Simple_repeat 1 73 0 34225 100 11 14 chr11 43924858 43928670 -106854883 - L1PA6 LINE L1 -11 6143 2352 189 74 0 0 chr11 43928670 43928697 -106854856 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 34225 100 11 14 chr11 43928697 43931034 -106852519 - L1PA6 LINE L1 -3802 2352 11 1569 215 3 3 chr11 43931300 43931598 -106851955 - AluJb SINE Alu -10 302 5 488 305 80 44 chr11 43931665 43931914 -106851639 + MIR SINE MIR 5 262 0 308 374 55 0 chr11 43932592 43932755 -106850798 - MIR3 SINE MIR 0 208 37 303 332 107 38 chr11 43933454 43933800 -106849753 + L2 LINE L2 2944 3313 0 985 252 87 50 chr11 43934249 43934531 -106849022 - MLT1D LTR MaLR -2 503 196 2106 134 0 0 chr11 43934531 43934830 -106848723 - AluSx SINE Alu -13 299 1 985 252 87 50 chr11 43934830 43935007 -106848546 - MLT1D LTR MaLR -309 196 27 269 280 101 36 chr11 43935035 43935203 -106848350 - L3 LINE CR1 -21 1556 1378 278 301 36 0 chr11 43935800 43935883 -106847670 - MIR SINE MIR -66 196 111 262 308 151 7 chr11 43935916 43936062 -106847491 - L3 LINE CR1 -257 1320 1154 1409 291 115 25 chr11 43937577 43938178 -106845375 + L2 LINE L2 2240 2894 -420 1123 67 11 22 chr11 43938685 43938864 -106844689 - AluYb8 SINE Alu -141 177 1 284 207 0 24 chr11 43938864 43938946 -106844607 + L1MD2 LINE L1 6279 6358 -1 207 325 37 55 chr11 43939566 43939672 -106843881 + MIR SINE MIR 20 122 -86 * 689 246 101 30 chr11 43939610 43939878 -106843675 + L2 LINE L2 661 947 -2367 788 265 49 16 chr11 43939957 43940327 -106843226 - L1MEc LINE L1 -5219 1177 796 381 266 28 52 chr11 43940336 43940625 -106842928 - L1M4 LINE L1 -1130 5016 4735 2244 126 0 0 chr11 43940658 43940968 -106842585 - AluSx SINE Alu -2 310 1 21 0 0 0 chr11 43941097 43941118 -106842435 + AT_rich Low_complexity Low_complexity 1 21 0 299 91 18 18 chr11 43942086 43942141 -106841412 - LTR49-int LTR ERV1 -2128 4203 4149 585 174 0 58 chr11 43942149 43942270 -106841283 + FLAM_C SINE Alu 12 125 -18 464 146 61 0 chr11 43942945 43943027 -106840526 - LTR49-int LTR ERV1 -6244 87 1 722 160 57 36 chr11 43943029 43943233 -106840320 - LTR49 LTR ERV1 0 595 424 790 227 111 43 chr11 43943244 43943616 -106839937 - LTR48 LTR ERV1 -263 359 1 2477 178 41 114 chr11 43943723 43943878 -106839675 - LTR1-int LTR ERV1 -2044 4287 4122 1630 166 3 53 chr11 43943878 43944180 -106839373 + AluJo SINE Alu 12 298 -14 2477 178 41 114 chr11 43944180 43944384 -106839169 - LTR1-int LTR ERV1 -2209 4122 3905 1577 189 36 26 chr11 43944384 43944690 -106838863 + AluJb SINE Alu 1 309 -3 2477 178 41 114 chr11 43944690 43945337 -106838216 - LTR1-int LTR ERV1 -2426 3905 3354 988 179 0 0 chr11 43945349 43945528 -106838025 + HUERS-P2 LTR ERV1 1740 1918 -1170 14683 178 44 11 chr11 43945534 43948467 -106835086 - LTR1-int LTR ERV1 0 3088 1 3702 147 59 80 chr11 43948467 43949269 -106834284 - LTR1 LTR ERV1 0 785 1 2933 187 39 48 chr11 43949272 43950020 -106833533 - LTR49-int LTR ERV1 -4219 2112 1372 1646 186 99 49 chr11 43950163 43950314 -106833239 - LTR49-int LTR ERV1 -3267 1613 1471 346 206 44 0 chr11 43950314 43950382 -106833171 - tRNA-Glu-GAG tRNA tRNA -3 72 2 1646 186 99 49 chr11 43950382 43950761 -106832792 - LTR49-int LTR ERV1 -3409 1471 844 5564 125 189 89 chr11 43950818 43952359 -106831194 + pTR5 LTR ERV1 743 2438 0 868 315 9 6 chr11 43953497 43953830 -106829723 - L1MEc LINE L1 -6029 367 34 463 266 16 23 chr11 43953870 43953998 -106829555 + L2 LINE L2 3185 3311 -2 2850 204 62 30 chr11 43954277 43955024 -106828529 - MER21B LTR ERV1 -54 809 39 27 0 0 0 chr11 43955314 43955341 -106828212 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr11 43955524 43955545 -106828008 + AT_rich Low_complexity Low_complexity 1 21 0 404 365 101 50 chr11 43955907 43956343 -106827210 - L2 LINE L2 -3 3310 2853 188 403 42 51 chr11 43956735 43956951 -106826602 + L2 LINE L2 2759 2972 -342 2321 102 0 0 chr11 43956991 43957296 -106826257 - AluSg SINE Alu -5 305 1 187 377 38 0 chr11 43957428 43957534 -106826019 + L2 LINE L2 3196 3305 -8 1414 203 3 7 chr11 43958495 43958800 -106824753 + L1MC3 LINE L1 7278 7581 -204 2153 126 0 0 chr11 43958808 43959102 -106824451 + AluSg SINE Alu 1 294 -16 919 62 0 0 chr11 43959104 43959217 -106824336 + AluY SINE Alu 175 287 -24 207 0 0 0 chr11 43959231 43959254 -106824299 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 763 176 15 73 chr11 43959271 43959475 -106824078 + L1MC3 LINE L1 7586 7777 -8 330 234 19 39 chr11 43959484 43959638 -106823915 - MER53 DNA DNA -16 173 23 2393 124 63 14 chr11 43959988 43960414 -106823139 - MER4C LTR ERV1 -18 447 1 2010 87 8 4 chr11 43960574 43960839 -106822714 + AluY SINE Alu 32 297 -14 4180 128 34 52 chr11 43960902 43961260 -106822293 - MER4E LTR ERV1 0 779 416 216 0 0 0 chr11 43961260 43961284 -106822269 + (TTTTA)n Simple_repeat Simple_repeat 3 26 0 2204 70 0 0 chr11 43961289 43961575 -106821978 - L1PA5 LINE L1 0 6154 5869 4180 128 34 52 chr11 43961575 43962001 -106821552 - MER4E LTR ERV1 -367 412 3 239 293 281 0 chr11 43962002 43962084 -106821469 - MER5A DNA MER1_type -18 171 67 544 170 35 23 chr11 43962480 43962651 -106820902 + GA-rich Low_complexity Low_complexity 3 175 0 392 243 10 0 chr11 43963537 43963640 -106819913 - L1ME3A LINE L1 0 6170 6067 1559 270 109 13 chr11 43963765 43964536 -106819017 - L1ME3A LINE L1 -114 6056 5215 4498 51 20 16 chr11 43964555 43965587 -106817966 + MER11A LTR ERVK 1 1266 0 782 246 45 94 chr11 43965639 43965792 -106817761 - L1ME3A LINE L1 -1007 5139 4980 2372 119 0 0 chr11 43965792 43966102 -106817451 - AluSq SINE Alu -1 312 3 782 246 45 94 chr11 43966102 43966618 -106816935 - L1ME3A LINE L1 -1166 4980 4503 423 228 27 20 chr11 43966619 43966634 -106816919 - L1MA10 LINE L1 -4 6330 6316 978 259 204 23 chr11 43966634 43967194 -106816359 - L1ME2 LINE L1 -9 6155 5497 321 338 91 7 chr11 43967286 43967440 -106816113 - MIR SINE MIR -47 215 49 1845 159 114 5 chr11 43967640 43968035 -106815518 + LTR47A LTR ERVL 1 438 -14 262 308 19 10 chr11 43968118 43968222 -106815331 + MIR SINE MIR 147 251 -11 2046 137 0 27 chr11 43968408 43968708 -106814845 - AluSq SINE Alu -21 292 1 3885 86 0 4 chr11 43969234 43969747 -106813806 + MER9 LTR ERVK 1 511 0 415 228 114 14 chr11 43969932 43970166 -106813387 - MER61D LTR ERV1 -24 897 275 2104 133 0 3 chr11 43970265 43970558 -106812995 - AluSx SINE Alu -20 292 1 746 153 0 8 chr11 43970558 43970689 -106812864 - LTR28 LTR ERV1 -890 130 1 228 54 27 0 chr11 43970720 43970757 -106812796 - L1MA9 LINE L1 -6 6306 6269 * 435 184 41 0 chr11 43970748 43970846 -106812707 + L1MA9 LINE L1 6162 6263 -49 3594 204 37 35 chr11 43970860 43972331 -106811222 - L1MA9 LINE L1 -196 6116 4640 942 177 14 36 chr11 43972326 43972476 -106811077 + L1 LINE L1 4415 4560 -1586 * 2042 182 35 33 chr11 43972476 43972905 -106810648 + MSTB1 LTR MaLR 1 430 -2 942 177 14 36 chr11 43972905 43972974 -106810579 + L1 LINE L1 4560 4629 -1517 309 296 7 92 chr11 43973072 43973214 -106810339 + L2 LINE L2 3184 3313 0 191 349 0 0 chr11 43973213 43973279 -106810274 + MIR SINE MIR 49 114 -148 * 792 258 97 30 chr11 43974146 43974608 -106808945 - L1MEc LINE L1 -3913 2483 1991 2366 218 45 6 chr11 43974616 43975143 -106808410 + MSTB1-int LTR MaLR 1099 1646 -5 2128 149 67 63 chr11 43975148 43975578 -106807975 + MSTB1 LTR MaLR 1 432 0 2092 285 78 35 chr11 43975586 43976915 -106806638 - L1MEc LINE L1 -4842 1554 169 294 309 98 8 chr11 43976996 43977119 -106806434 + L2 LINE L2 1720 1853 -1461 1553 351 53 20 chr11 43977137 43977898 -106805655 + L2 LINE L2 2110 2895 -419 343 172 40 81 chr11 43978886 43978985 -106804568 - MLT1K LTR MaLR -2 586 492 648 310 128 17 chr11 43979648 43980101 -106803452 - MLT1G1 LTR MaLR 0 595 38 36 0 0 0 chr11 43980228 43980264 -106803289 + AT_rich Low_complexity Low_complexity 1 36 0 2052 137 0 7 chr11 43980264 43980556 -106802997 - AluSx SINE Alu -22 290 1 314 281 0 0 chr11 43980723 43980805 -106802748 + MER103 DNA DNA 47 128 -38 239 229 83 64 chr11 43981180 43981289 -106802264 - MLT1D LTR MaLR -394 111 1 281 221 53 0 chr11 43981319 43981432 -106802121 + (TA)n Simple_repeat Simple_repeat 2 120 0 258 372 53 0 chr11 43981446 43981559 -106801994 + L2 LINE L2 3154 3272 0 1214 213 70 13 chr11 43981874 43982176 -106801377 + MLT1D LTR MaLR 172 605 -21 7433 34 7 0 chr11 43982176 43983537 -106800016 + L1PA4 LINE L1 4787 6153 -2 1214 213 70 13 chr11 43983537 43983560 -106799993 + MLT1D LTR MaLR 605 625 -1 24 0 0 0 chr11 43983661 43983685 -106799868 + AT_rich Low_complexity Low_complexity 1 24 0 975 188 5 0 chr11 43984623 43984815 -106798738 + L1PBa LINE L1 8 200 -6663 3017 137 7 12 chr11 43984817 43985584 -106797969 + L1PBa LINE L1 636 1560 -5303 580 118 31 31 chr11 43985592 43985918 -106797635 + C-rich Low_complexity Low_complexity 1 326 0 457 82 38 55 chr11 43985884 43986067 -106797486 + (CACCC)n Simple_repeat Simple_repeat 1 180 0 * 11400 227 14 30 chr11 43986250 43986441 -106797112 + L1PBa LINE L1 1682 1874 -4988 2203 117 0 22 chr11 43986441 43986757 -106796796 + AluSc SINE Alu 1 309 0 11400 227 14 30 chr11 43986757 43987163 -106796390 + L1PBa LINE L1 1874 2285 -4577 2114 119 10 29 chr11 43987163 43987474 -106796079 - AluSp SINE Alu -8 305 1 11400 227 14 30 chr11 43987474 43991069 -106792484 + L1PBa LINE L1 2285 5971 -891 2497 79 38 0 chr11 43991069 43991409 -106792144 + L1PB1 LINE L1 5798 6150 -1 29 47 0 0 chr11 43991409 43991452 -106792101 + AT_rich Low_complexity Low_complexity 1 43 0 2045 123 11 0 chr11 43991653 43991938 -106791615 - AluSp SINE Alu -22 291 4 2164 121 13 0 chr11 43992256 43992563 -106790990 + AluSp SINE Alu 1 311 -2 259 263 76 10 chr11 43992609 43992807 -106790746 + MER114 LTR ERV 210 420 -228 23 0 0 0 chr11 43992812 43992835 -106790718 + AT_rich Low_complexity Low_complexity 1 23 0 3468 212 49 27 chr11 43992850 43994584 -106788969 - L1MB2 LINE L1 -12 6159 4398 735 253 14 43 chr11 43994581 43994858 -106788695 - L1MB7 LINE L1 0 6184 5916 * 3640 242 50 53 chr11 43994860 43995352 -106788201 - L1MB2 LINE L1 -1730 4416 3924 24249 43 3 0 chr11 43995352 43999158 -106784395 - L1PA4 LINE L1 -1 6154 2339 3640 242 50 53 chr11 43999158 44000408 -106783145 - L1MB2 LINE L1 -2222 3924 2680 342 125 0 62 chr11 44000433 44000497 -106783056 - Tigger7 DNA MER2_type -26 2561 2502 1854 147 105 11 chr11 44000498 44000880 -106782673 + MSTA LTR MaLR 1 418 -10 9087 151 9 42 chr11 44000898 44002529 -106781024 + MSTA-int LTR MaLR 3 1580 0 1824 143 138 29 chr11 44002529 44002913 -106780640 + MSTA LTR MaLR 1 426 -2 28 0 0 0 chr11 44002997 44003025 -106780528 + AT_rich Low_complexity Low_complexity 1 28 0 923 236 72 58 chr11 44003087 44003426 -106780127 - MLT1A1 LTR MaLR 0 365 19 2769 143 9 2 chr11 44003426 44003851 -106779702 + MSTA LTR MaLR 1 428 0 923 236 72 58 chr11 44003851 44003871 -106779682 - MLT1A1 LTR MaLR -346 19 1 309 205 24 126 chr11 44003875 44004002 -106779551 + L1ME LINE L1 5372 5485 -2323 619 126 92 0 chr11 44004012 44004131 -106779422 - AluSg/x SINE Alu -7 305 176 310 270 21 8 chr11 44004240 44004427 -106779126 + L1ME LINE L1 5692 5881 -289 203 274 20 20 chr11 44004452 44004598 -106778955 + (TA)n Simple_repeat Simple_repeat 2 147 0 200 289 0 56 chr11 44004576 44004666 -106778887 + (TCTA)n Simple_repeat Simple_repeat 1 85 0 * 270 369 95 12 chr11 44005154 44005322 -106778231 - MIR3 SINE MIR -9 199 18 311 333 130 0 chr11 44006338 44006476 -106777077 - MIR SINE MIR -67 195 40 746 265 24 0 chr11 44006500 44006666 -106776887 - MER5A DNA MER1_type -6 183 14 2975 174 34 9 chr11 44008158 44009220 -106774333 + L1MA5 LINE L1 4711 5788 -515 519 154 0 11 chr11 44009222 44009313 -106774240 + MER4A LTR ERV1 3 92 -572 1530 113 30 79 chr11 44009314 44009677 -106773876 + MER4A LTR ERV1 261 664 0 2272 172 19 47 chr11 44009677 44010027 -106773526 + L1MA5 LINE L1 5785 6116 -184 2155 110 14 0 chr11 44010027 44010318 -106773235 - AluSq SINE Alu -18 295 1 2272 172 19 47 chr11 44010318 44010496 -106773057 + L1MA5 LINE L1 6116 6298 -2 1014 157 26 11 chr11 44010638 44010829 -106772724 - THE1A LTR MaLR -4 351 158 3744 201 26 3 chr11 44010839 44011656 -106771897 + L1P3 LINE L1 11 831 -5315 6681 114 161 74 chr11 44011656 44013179 -106770374 + pTR5 LTR ERV1 784 2438 0 26136 90 17 5 chr11 44013182 44017115 -106766438 + L1PA6 LINE L1 1445 6235 -1349 223 170 0 0 chr11 44017115 44017162 -106766391 + (TA)n Simple_repeat Simple_repeat 1 47 0 6970 58 11 0 chr11 44017162 44018518 -106765035 + L1PA6 LINE L1 6229 7590 -2 956 153 12 12 chr11 44018536 44018706 -106764847 - THE1A LTR MaLR -194 170 1 1206 185 45 6 chr11 44020659 44021059 -106762494 + MER72 LTR ERV1 9 455 -267 1715 195 41 52 chr11 44021059 44021611 -106761942 - MLT2A2 LTR ERVL 0 554 1 521 86 0 181 chr11 44021621 44021691 -106761862 + MER72 LTR ERV1 628 671 -51 2244 114 0 0 chr11 44021691 44021990 -106761563 + AluSg SINE Alu 11 309 -1 521 86 0 181 chr11 44021990 44022035 -106761518 + MER72 LTR ERV1 671 722 0 244 62 21 21 chr11 44022302 44022350 -106761203 + (TTTTA)n Simple_repeat Simple_repeat 3 50 0 402 75 11 129 chr11 44022365 44022437 -106761116 + MER4B LTR ERV1 19 79 -531 3076 121 35 66 chr11 44022437 44023056 -106760497 - MER4A LTR ERV1 0 600 1 402 75 11 129 chr11 44023056 44023076 -106760477 + MER4B LTR ERV1 79 100 -510 1835 214 109 55 chr11 44023082 44023594 -106759959 + MER50 LTR ERV1 10 570 -164 2510 81 3 0 chr11 44023594 44023902 -106759651 - AluSp SINE Alu -4 309 1 1835 214 109 55 chr11 44023902 44024077 -106759476 + MER50 LTR ERV1 570 734 0 3632 154 80 39 chr11 44024077 44024806 -106758747 + MER4D LTR ERV1 96 860 -43 2058 121 24 0 chr11 44024806 44025096 -106758457 - AluSc SINE Alu -12 297 1 3632 154 80 39 chr11 44025096 44025137 -106758416 + MER4D LTR ERV1 860 898 -5 257 257 95 34 chr11 44025664 44025812 -106757741 - MLT1G1 LTR MaLR -290 305 149 1928 213 96 87 chr11 44025909 44026689 -106756864 + MER21B LTR ERV1 17 803 -60 2022 224 30 0 chr11 44026726 44027154 -106756399 + LTR53 LTR ERVL 41 481 -38 258 170 0 0 chr11 44027216 44027263 -106756290 - MLT1G1 LTR MaLR -541 54 8 2141 127 7 0 chr11 44027492 44027791 -106755762 - AluSg1 SINE Alu -8 301 1 1620 169 12 68 chr11 44028007 44028332 -106755221 - AluJo SINE Alu -3 309 3 1035 233 8 16 chr11 44028577 44028830 -106754723 - MER4D LTR ERV1 0 903 653 304 71 0 0 chr11 44028829 44028871 -106754682 + MADE1 DNA Mariner 36 77 -3 * 813 172 18 0 chr11 44028918 44029265 -106754288 + (TATG)n Simple_repeat Simple_repeat 1 353 0 21 71 0 0 chr11 44030143 44030185 -106753368 + AT_rich Low_complexity Low_complexity 1 42 0 231 304 0 0 chr11 44030393 44030449 -106753104 + (CA)n Simple_repeat Simple_repeat 1 56 0 2132 107 3 17 chr11 44030454 44030754 -106752799 + AluSc SINE Alu 10 305 -4 222 307 11 23 chr11 44030827 44030915 -106752638 + GA-rich Low_complexity Low_complexity 2 88 0 203 296 0 74 chr11 44030985 44031066 -106752487 + L2 LINE L2 3150 3224 -89 371 269 32 75 chr11 44031559 44031745 -106751808 - MIR SINE MIR -50 212 35 1347 218 49 68 chr11 44031879 44032352 -106751201 - MLT1C LTR MaLR 0 467 4 211 200 0 0 chr11 44033473 44033513 -106750040 + (CA)n Simple_repeat Simple_repeat 1 40 0 309 191 12 36 chr11 44033694 44033778 -106749775 + MER67D LTR ERV1 2 83 -431 467 115 0 0 chr11 44033828 44033906 -106749647 + MER67D LTR ERV1 78 155 -359 1576 89 25 0 chr11 44033992 44034195 -106749358 + AluSc SINE Alu 82 289 -20 1320 166 4 4 chr11 44034199 44034428 -106749125 + MER67C LTR ERV1 175 403 -307 288 248 121 14 chr11 44034458 44034599 -106748954 + MER67D LTR ERV1 359 514 0 347 381 13 0 chr11 44035486 44035641 -106747912 - LTR33 LTR ERVL -321 200 44 345 281 0 31 chr11 44036216 44036312 -106747241 - MIR SINE MIR 0 262 170 500 310 131 64 chr11 44036312 44036799 -106746754 + LTR33 LTR ERVL 1 520 -1 217 23 23 47 chr11 44036831 44036874 -106746679 + (TTTTA)n Simple_repeat Simple_repeat 2 120 0 2039 127 3 3 chr11 44036874 44037157 -106746396 - AluSq SINE Alu -30 283 1 206 391 46 0 chr11 44037163 44037250 -106746303 - MIR SINE MIR -118 144 54 332 250 0 0 chr11 44037374 44037446 -106746107 + MER3 DNA MER1_type 46 117 -92 * 373 154 161 31 chr11 44037444 44037574 -106745979 + MER3 DNA MER1_type 2469 2615 0 1666 230 50 38 chr11 44038041 44038484 -106745069 - MER77 LTR ERV1 -104 501 54 1808 195 60 152 chr11 44039049 44039316 -106744237 + LTR8A LTR ERV1 1 291 -436 2500 131 0 8 chr11 44039316 44039683 -106743870 + THE1B LTR MaLR 1 364 0 1808 195 60 152 chr11 44039683 44040216 -106743337 + LTR8A LTR ERV1 291 727 0 665 308 68 38 chr11 44040694 44041090 -106742463 + MLT1I LTR MaLR 1 408 -1 1699 184 18 0 chr11 44041252 44041530 -106742023 + AluSx SINE Alu 3 285 -27 21 57 0 0 chr11 44042326 44042361 -106741192 + AT_rich Low_complexity Low_complexity 1 35 0 433 169 12 0 chr11 44042666 44042749 -106740804 - AluJ/FLAM SINE Alu -228 84 1 322 279 0 146 chr11 44042907 44043065 -106740488 - L2 LINE L2 -1 3271 3137 2001 124 30 0 chr11 44043396 44043695 -106739858 - AluSp SINE Alu -5 308 1 3592 11 0 0 chr11 44043717 44044340 -106739213 - L1PA2 LINE L1 -491 5664 5042 4223 8 0 0 chr11 44044340 44044815 -106738738 + L1PA2 LINE L1 5681 6155 0 32 0 0 0 chr11 44044815 44044847 -106738706 + AT_rich Low_complexity Low_complexity 1 32 0 1150 261 11 39 chr11 44046060 44046422 -106737131 + MER97a DNA MER1_type? 1 352 -542 886 266 150 33 chr11 44046422 44046874 -106736679 + MLT1D LTR MaLR 1 505 0 * 1053 286 99 24 chr11 44046874 44047565 -106735988 + MER97c DNA MER1_type? 344 1086 -4 249 314 29 51 chr11 44048351 44048488 -106735065 + MIR SINE MIR 20 153 -109 260 322 43 26 chr11 44049325 44049440 -106734113 + MIR SINE MIR 20 136 -126 966 319 133 36 chr11 44049696 44049740 -106733813 + MER115 DNA AcHobo 3 41 -652 2245 80 0 27 chr11 44049740 44050041 -106733512 - AluY SINE Alu -16 295 3 966 319 133 36 chr11 44050041 44050626 -106732927 + MER115 DNA AcHobo 41 693 0 5852 28 0 0 chr11 44050919 44051604 -106731949 - L1PA4 LINE L1 0 6155 5471 1500 167 10 66 chr11 44051823 44051939 -106731614 + AluJo SINE Alu 7 128 -184 2009 139 3 0 chr11 44051939 44052227 -106731326 - AluSx SINE Alu -23 289 1 1500 167 10 66 chr11 44052227 44052415 -106731138 + AluJo SINE Alu 128 294 -18 1576 108 9 0 chr11 44053616 44053830 -106729723 - AluSq SINE Alu -14 299 84 774 161 18 24 chr11 44054342 44054510 -106729043 + L1MB8 LINE L1 6001 6167 -11 2190 127 0 10 chr11 44054510 44054824 -106728729 - AluSx SINE Alu -1 311 1 2159 116 26 0 chr11 44055332 44055634 -106727919 - AluSx SINE Alu -2 310 1 938 98 0 0 chr11 44056582 44056714 -106726839 + AluY SINE Alu 177 308 -3 290 278 0 52 chr11 44056714 44056811 -106726742 - MIR SINE MIR -154 108 17 940 158 0 33 chr11 44056844 44057027 -106726526 - AluSg/x SINE Alu 0 312 136 1712 134 0 8 chr11 44057129 44057376 -106726177 - AluSx SINE Alu -67 245 1 400 283 7 65 chr11 44058013 44058151 -106725402 + MLT1J2 LTR MaLR 37 166 -284 202 222 22 0 chr11 44058800 44058845 -106724708 - MIR SINE MIR -116 146 101 763 296 106 57 chr11 44058846 44059392 -106724161 + MLT1G1 LTR MaLR 8 558 -32 26 0 0 0 chr11 44059412 44059438 -106724115 + AT_rich Low_complexity Low_complexity 1 26 0 180 373 0 0 chr11 44059438 44059489 -106724064 - MIR SINE MIR -183 79 29 303 246 9 79 chr11 44059604 44059718 -106723835 + L2 LINE L2 3208 3313 0 307 351 96 14 chr11 44059790 44059998 -106723555 - MIR SINE MIR -4 258 34 1265 300 57 19 chr11 44060003 44060390 -106723163 + LTR33 LTR ERVL 3 415 -106 2206 78 0 11 chr11 44060390 44060734 -106722819 - AluY SINE Alu 0 341 1 1265 300 57 19 chr11 44060734 44060818 -106722735 + LTR33 LTR ERVL 415 494 -27 1348 337 75 20 chr11 44060826 44061435 -106722118 - MER115 DNA AcHobo -9 684 42 346 122 74 0 chr11 44061909 44062057 -106721496 + (TA)n Simple_repeat Simple_repeat 2 160 0 294 180 55 16 chr11 44062057 44062185 -106721368 + (TTATA)n Simple_repeat Simple_repeat 4 136 0 21 0 0 0 chr11 44062201 44062222 -106721331 + AT_rich Low_complexity Low_complexity 1 21 0 206 145 81 0 chr11 44062223 44062347 -106721206 + (TA)n Simple_repeat Simple_repeat 2 135 0 368 148 59 0 chr11 44062373 44062542 -106721011 + (TA)n Simple_repeat Simple_repeat 2 180 0 26 0 0 0 chr11 44062542 44062568 -106720985 + AT_rich Low_complexity Low_complexity 1 26 0 24 32 0 0 chr11 44063135 44063166 -106720387 + AT_rich Low_complexity Low_complexity 1 31 0 465 284 55 0 chr11 44063245 44063372 -106720181 + MER5C DNA MER1_type 1 134 -190 391 278 21 56 chr11 44063472 44063616 -106719937 - L2 LINE L2 0 3272 3134 336 48 0 0 chr11 44063718 44063760 -106719793 + (CA)n Simple_repeat Simple_repeat 2 43 0 207 160 40 0 chr11 44063851 44063901 -106719652 + (TA)n Simple_repeat Simple_repeat 1 52 0 1035 100 0 0 chr11 44063920 44064070 -106719483 + (TA)n Simple_repeat Simple_repeat 1 150 0 632 322 105 53 chr11 44064130 44064316 -106719237 - L2 LINE L2 -496 2818 2643 1547 232 0 3 chr11 44064316 44064613 -106718940 - AluJb SINE Alu -16 296 1 1495 229 27 56 chr11 44064620 44065101 -106718452 + MLT1C LTR MaLR 1 467 0 632 322 105 53 chr11 44065101 44065571 -106717982 - L2 LINE L2 -676 2638 2119 189 107 0 0 chr11 44065708 44065736 -106717817 + (CATATA)n Simple_repeat Simple_repeat 3 30 0 986 192 5 15 chr11 44065809 44066012 -106717541 - MER89 LTR ERV1 0 559 359 827 243 49 5 chr11 44066069 44066254 -106717299 - MER89 LTR ERV1 -207 352 160 384 270 16 17 chr11 44066257 44066394 -106717159 + L1MD3 LINE L1 7680 7987 0 195 42 0 0 chr11 44067532 44067556 -106715997 + (TAA)n Simple_repeat Simple_repeat 2 25 0 311 347 81 22 chr11 44067571 44067793 -106715760 - MIR SINE MIR -26 236 2 2598 188 40 41 chr11 44067971 44068796 -106714757 + MER54A LTR ERVL 1 644 0 5207 241 40 41 chr11 44070018 44072041 -106711512 - L1M1 LINE L1 -4831 2734 13 307 256 22 0 chr11 44072292 44072382 -106711171 + (TTATA)n Simple_repeat Simple_repeat 3 94 0 742 178 101 53 chr11 44073802 44073971 -106709582 - MER45A DNA AcHobo -1 177 1 890 133 76 44 chr11 44074550 44074708 -106708845 + AluSg/x SINE Alu 135 297 -13 800 270 87 19 chr11 44075020 44075331 -106708222 + L1ME3A LINE L1 5838 6169 -1 2270 70 0 11 chr11 44075569 44075935 -106707618 + AluY SINE Alu 1 363 0 21 0 0 0 chr11 44077266 44077287 -106706266 + AT_rich Low_complexity Low_complexity 1 21 0 25 75 0 0 chr11 44077436 44077489 -106706064 + AT_rich Low_complexity Low_complexity 1 53 0 488 219 148 31 chr11 44077584 44077840 -106705713 + L1ME4a LINE L1 5816 6101 -20 1970 116 10 10 chr11 44079431 44079734 -106703819 + AluSx SINE Alu 1 303 -9 299 333 133 0 chr11 44080287 44080392 -106703161 + L2 LINE L2 3149 3267 -5 192 40 0 0 chr11 44080392 44080417 -106703136 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 931 129 0 0 chr11 44080418 44080542 -106703011 + AluSq/x SINE Alu 2 125 -187 223 281 50 58 chr11 44081031 44081152 -106702401 - L2 LINE L2 -8 3305 3186 22 0 0 0 chr11 44082698 44082720 -106700833 + AT_rich Low_complexity Low_complexity 1 22 0 268 256 51 13 chr11 44082721 44082799 -106700754 - L2 LINE L2 0 3313 3233 1245 291 135 28 chr11 44083471 44084152 -106699401 + L1MDa LINE L1 123 972 -5568 773 227 26 18 chr11 44084152 44084381 -106699172 - LTR55 LTR ERV -317 231 1 3771 238 55 47 chr11 44084423 44084982 -106698571 + L1MDa LINE L1 1262 1815 -4725 1121 59 29 6 chr11 44084982 44085152 -106698401 + (GAAA)n Simple_repeat Simple_repeat 2 175 0 3771 238 55 47 chr11 44085152 44086853 -106696700 + L1MDa LINE L1 1815 3540 -3000 1625 198 14 3 chr11 44086853 44087207 -106696346 + L1MB3 LINE L1 5823 6180 -3 3771 238 55 47 chr11 44087207 44087303 -106696250 + L1MDa LINE L1 3540 3634 -2906 * 4410 217 8 11 chr11 44087295 44088391 -106695162 - L1P5 LINE L1 -891 5255 4163 1411 105 14 0 chr11 44088386 44088605 -106694948 + L1P5 LINE L1 5266 5487 -664 * 29397 125 15 60 chr11 44088609 44095042 -106688511 + L1PA7 LINE L1 9 6139 -15 345 47 0 0 chr11 44095077 44095120 -106688433 + (CA)n Simple_repeat Simple_repeat 2 44 0 1239 193 16 11 chr11 44095146 44095375 -106688178 + L1ME LINE L1 5456 5685 -479 3652 96 7 36 chr11 44095375 44095946 -106687607 + L1PB1 LINE L1 5590 6147 -4 1239 193 16 11 chr11 44095946 44096014 -106687539 + L1ME LINE L1 5685 5751 -413 5571 187 49 55 chr11 44096057 44097995 -106685558 + L1MA7 LINE L1 3857 5777 -514 4524 234 22 21 chr11 44098201 44100271 -106683282 + L1PA15 LINE L1 1255 3343 -3454 472 211 0 0 chr11 44100375 44100470 -106683083 + L1 LINE L1 3628 3722 -3075 2190 135 30 28 chr11 44100474 44100745 -106682808 + THE1B LTR MaLR 1 275 -89 3608 142 91 12 chr11 44100745 44101384 -106682169 - LTR8 LTR ERV1 -2 689 1 2190 135 30 28 chr11 44101384 44101475 -106682078 + THE1B LTR MaLR 275 364 0 10158 119 16 27 chr11 44101475 44103073 -106680480 + THE1B-int LTR MaLR 1 1580 0 2204 130 40 11 chr11 44103073 44103427 -106680126 + THE1B LTR MaLR 1 364 0 9326 230 51 6 chr11 44103433 44106456 -106677097 + L1PA15 LINE L1 3728 6810 -6 2031 220 7 36 chr11 44106541 44107090 -106676463 + L1MA7 LINE L1 5759 6291 0 670 242 36 52 chr11 44107151 44107351 -106676202 - L1ME2 LINE L1 -9 6155 5958 2347 75 23 3 chr11 44107351 44107656 -106675897 - AluY SINE Alu 0 311 1 670 242 36 52 chr11 44107656 44107703 -106675850 - L1ME2 LINE L1 -206 5958 5912 3683 265 60 51 chr11 44107781 44109370 -106674183 + L1MD1 LINE L1 3392 4966 -1180 279 0 0 0 chr11 44109370 44109401 -106674152 + (CA)n Simple_repeat Simple_repeat 2 32 0 3683 265 60 51 chr11 44109401 44109560 -106673993 + L1MD1 LINE L1 4966 5159 -987 2059 120 7 3 chr11 44109560 44109859 -106673694 + AluSq SINE Alu 1 300 -13 3683 265 60 51 chr11 44109859 44109962 -106673591 + L1MD1 LINE L1 5159 5260 -886 814 134 8 0 chr11 44109963 44110082 -106673471 + AluJb SINE Alu 1 120 -192 183 42 0 0 chr11 44110082 44110106 -106673447 + (CAA)n Simple_repeat Simple_repeat 2 25 0 805 195 13 58 chr11 44110114 44110340 -106673213 + L1MD1 LINE L1 5254 5469 -773 270 219 9 84 chr11 44110340 44110435 -106673118 + AluSp SINE Alu 135 180 -123 2772 234 30 32 chr11 44110476 44110714 -106672839 + L1MD1 LINE L1 5469 5706 -536 2088 108 16 13 chr11 44110714 44111021 -106672532 - AluSx SINE Alu -4 308 1 2772 234 30 32 chr11 44111021 44111558 -106671995 + L1MD1 LINE L1 5706 6242 0 26 50 0 0 chr11 44111798 44111838 -106671715 + AT_rich Low_complexity Low_complexity 1 40 0 469 244 11 0 chr11 44112976 44113066 -106670487 + MER5A DNA MER1_type 11 101 -88 1935 152 29 35 chr11 44113242 44113617 -106669936 + THE1C LTR MaLR 3 375 0 9428 136 48 7 chr11 44113617 44115134 -106668419 + THE1C-int LTR MaLR 1 1580 0 2002 132 24 29 chr11 44115134 44115475 -106668078 + THE1C LTR MaLR 1 339 -36 184 313 38 12 chr11 44115582 44115662 -106667891 - MIR SINE MIR -107 155 74 1646 81 5 5 chr11 44115826 44116047 -106667506 - pTR5 LTR ERV1 -2046 392 172 361 253 10 0 chr11 44116049 44116148 -106667405 - LTR30 LTR ERV1 -79 643 544 5401 107 36 26 chr11 44116148 44117260 -106666293 - pTR5 LTR ERV1 -413 2025 743 1683 154 193 14 chr11 44117330 44117693 -106665860 - MSTA LTR MaLR 0 428 1 302 313 80 35 chr11 44118476 44118677 -106664876 - L3 LINE CR1 -1173 404 195 2151 136 3 69 chr11 44118869 44119259 -106664294 - THE1B LTR MaLR 0 364 1 215 328 0 0 chr11 44119427 44119485 -106664068 + L2 LINE L2 3205 3262 -10 277 241 53 145 chr11 44119845 44120073 -106663480 + MLT1L LTR MaLR 188 394 -221 192 326 132 39 chr11 44120393 44120522 -106663031 + L2 LINE L2 3173 3313 0 183 268 21 62 chr11 44120602 44120699 -106662854 + L2 LINE L2 3144 3236 -77 847 216 89 108 chr11 44120873 44121243 -106662310 - MLT1A1 LTR MaLR 0 365 3 21 0 0 0 chr11 44121493 44121514 -106662039 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr11 44121894 44121916 -106661637 + AT_rich Low_complexity Low_complexity 1 22 0 305 29 0 0 chr11 44121973 44122008 -106661545 + (T)n Simple_repeat Simple_repeat 1 35 0 23 0 0 0 chr11 44122193 44122216 -106661337 + AT_rich Low_complexity Low_complexity 1 23 0 1255 221 130 27 chr11 44123383 44123571 -106659982 + MLT1A1 LTR MaLR 1 168 -197 2171 127 0 0 chr11 44123571 44123870 -106659683 + AluSg SINE Alu 1 299 -11 1255 221 130 27 chr11 44123870 44124012 -106659541 + MLT1A1 LTR MaLR 168 365 0 209 309 0 0 chr11 44124053 44124108 -106659445 - L2 LINE L2 -5 3267 3213 817 286 70 72 chr11 44125066 44125535 -106658018 - L2 LINE L2 0 3313 2846 2681 135 47 11 chr11 44125577 44126044 -106657509 - LTR19A LTR ERV1 0 486 3 372 310 32 19 chr11 44126574 44126732 -106656821 - L2 LINE L2 -510 2804 2645 921 254 38 0 chr11 44126747 44126956 -106656597 + MER58A DNA MER1_type 2 218 -6 562 288 42 45 chr11 44127259 44127574 -106655979 - MLT1I LTR MaLR -49 360 68 441 222 70 70 chr11 44127647 44127818 -106655735 + LTR41 LTR ERVL 7 177 -596 649 189 95 6 chr11 44127821 44127990 -106655563 + MER53 DNA DNA 3 186 -3 229 123 18 18 chr11 44128015 44128072 -106655481 + T-rich Low_complexity Low_complexity 4 60 0 1274 56 0 0 chr11 44128081 44128241 -106655312 - L1PA5 LINE L1 -6 6148 5989 259 240 79 26 chr11 44128475 44128643 -106654910 + LTR41 LTR ERVL 608 787 -8 1060 177 125 117 chr11 44129057 44129099 -106654454 + MLT1B LTR MaLR 1 41 -349 2158 99 0 0 chr11 44129099 44129412 -106654141 + AluSx SINE Alu 1 313 0 1060 177 125 117 chr11 44129412 44129719 -106653834 + MLT1B LTR MaLR 41 354 -36 299 104 0 0 chr11 44129715 44129763 -106653790 - MADE1 DNA Mariner -32 48 1 * 206 342 184 26 chr11 44130057 44130209 -106653344 - MER5A DNA MER1_type -2 187 12 241 45 23 23 chr11 44130215 44130259 -106653294 + (CAA)n Simple_repeat Simple_repeat 3 46 0 499 330 18 13 chr11 44131041 44131268 -106652285 + L1MC/D LINE L1 5517 5744 -2064 219 393 8 0 chr11 44132303 44132425 -106651128 + L2 LINE L2 2887 3009 -263 219 189 0 0 chr11 44132782 44132835 -106650718 + (TA)n Simple_repeat Simple_repeat 2 54 0 562 181 1 43 chr11 44134652 44134784 -106648769 + MLT1C LTR MaLR 245 461 -6 19859 78 6 10 chr11 44134971 44135314 -106648239 - L1PA6 LINE L1 0 6469 6126 2272 87 3 0 chr11 44135314 44135602 -106647951 - AluY SINE Alu -22 289 1 19859 78 6 10 chr11 44135602 44136621 -106646932 - L1PA6 LINE L1 -343 6126 5104 369 0 0 0 chr11 44136621 44136662 -106646891 + (TA)n Simple_repeat Simple_repeat 1 41 0 19859 78 6 10 chr11 44136662 44140638 -106642915 - L1PA6 LINE L1 -1365 5104 1162 621 115 0 0 chr11 44140636 44140723 -106642830 - L1PA6 LINE L1 -6365 96 10 * 378 242 56 73 chr11 44141034 44141212 -106642341 + MLT1J LTR MaLR 137 311 -200 328 309 130 12 chr11 44141559 44141721 -106641832 + MIR SINE MIR 82 262 0 243 266 150 44 chr11 44143465 44143578 -106639975 - MIR SINE MIR -102 160 36 343 66 0 0 chr11 44144665 44144715 -106638838 - Alu SINE Alu -255 47 4 510 296 90 34 chr11 44144786 44145053 -106638500 + L2 LINE L2 3032 3313 0 709 296 57 17 chr11 44145878 44146108 -106637445 + MIR SINE MIR 8 246 -16 248 331 78 42 chr11 44146630 44146772 -106636781 - MIR SINE MIR -114 148 2 575 137 34 23 chr11 44149050 44149225 -106634328 + (CA)n Simple_repeat Simple_repeat 1 177 0 453 108 66 24 chr11 44149247 44149414 -106634139 + (CA)n Simple_repeat Simple_repeat 1 174 0 4629 297 140 38 chr11 44149694 44150915 -106632638 + L2 LINE L2 144 1239 -2075 2387 100 0 0 chr11 44150915 44151215 -106632338 + AluSg SINE Alu 1 300 -10 4629 297 140 38 chr11 44151215 44152565 -106630988 + L2 LINE L2 1239 2977 -337 323 326 0 43 chr11 44152805 44152946 -106630607 + L2 LINE L2 3179 3313 0 346 242 0 22 chr11 44153129 44153220 -106630333 + MIR SINE MIR 172 260 -2 249 370 42 0 chr11 44154109 44154228 -106629325 - MIR3 SINE MIR -3 205 82 1164 146 7 114 chr11 44154431 44154739 -106628814 - L1MD1 LINE L1 -270 5972 5698 * 2687 122 22 28 chr11 44154725 44154923 -106628630 + L1P4 LINE L1 5159 5357 -808 2423 72 10 0 chr11 44154923 44155227 -106628326 + AluY SINE Alu 1 307 -4 2687 122 22 28 chr11 44155227 44155549 -106628004 + L1P4 LINE L1 5357 5813 -352 2245 156 13 5 chr11 44155554 44155945 -106627608 + L1PA15 LINE L1 5768 6161 -4 1681 173 8 23 chr11 44155970 44156357 -106627196 - L1MD1 LINE L1 -562 5680 5300 21 36 0 0 chr11 44156990 44157018 -106626535 + AT_rich Low_complexity Low_complexity 1 28 0 395 164 214 50 chr11 44157667 44157826 -106625727 - MER53 DNA DNA -3 186 2 301 167 74 0 chr11 44157841 44157895 -106625658 + MIR SINE MIR 119 176 -86 752 294 42 35 chr11 44157931 44158244 -106625309 + L2 LINE L2 2999 3313 0 803 311 8 4 chr11 44159752 44159990 -106623563 - MIR SINE MIR -22 240 2 186 43 0 0 chr11 44160068 44160091 -106623462 + (T)n Simple_repeat Simple_repeat 1 23 0 22 0 0 0 chr11 44160172 44160194 -106623359 + AT_rich Low_complexity Low_complexity 1 22 0 210 208 0 21 chr11 44161252 44161300 -106622253 + T-rich Low_complexity Low_complexity 2 48 0 382 309 39 11 chr11 44161527 44161705 -106621848 + MER117 DNA MER1_type 8 190 -7 270 294 126 14 chr11 44161866 44162009 -106621544 - L3b LINE CR1 -186 1397 1239 2240 123 7 0 chr11 44165065 44165374 -106618179 + AluSx SINE Alu 1 311 -1 1955 131 20 26 chr11 44165758 44166064 -106617489 + AluSx SINE Alu 1 304 -8 789 228 0 6 chr11 44166922 44167089 -106616464 - FRAM SINE Alu -10 166 1 704 217 0 0 chr11 44167419 44167562 -106615991 + L1MC4 LINE L1 7416 7558 -484 2404 118 8 0 chr11 44167564 44167927 -106615626 - L1PA13 LINE L1 -14 6149 5784 3045 132 31 2 chr11 44167930 44168476 -106615077 + L1PA13 LINE L1 5254 5815 -348 662 257 122 4 chr11 44168468 44168713 -106614840 + L1MC4 LINE L1 7547 7820 -222 * 1567 166 58 60 chr11 44168793 44168842 -106614711 - MSTD LTR MaLR 0 396 348 2196 111 10 3 chr11 44168842 44169140 -106614413 - AluSq SINE Alu -13 300 1 1567 166 58 60 chr11 44169140 44169487 -106614066 - MSTD LTR MaLR -48 348 1 288 180 16 0 chr11 44169497 44169558 -106613995 + L1MC4 LINE L1 7922 7983 -59 709 179 15 51 chr11 44169560 44169755 -106613798 + MER53 DNA DNA 1 188 -1 477 121 0 0 chr11 44172359 44172425 -106611128 - AluS SINE Alu -247 66 1 317 136 51 0 chr11 44172430 44172489 -106611064 - MSTD LTR MaLR -43 353 292 2609 110 3 3 chr11 44173638 44174002 -106609551 - THE1B LTR MaLR 0 364 1 313 264 186 21 chr11 44174345 44174485 -106609068 + MER45A DNA AcHobo 15 177 -1 329 243 187 9 chr11 44175949 44176056 -106607497 - L2 LINE L2 0 3272 3147 2034 189 39 50 chr11 44176410 44176484 -106607069 + L1MA9 LINE L1 5711 5784 -528 245 29 29 0 chr11 44176484 44176518 -106607035 + (CA)n Simple_repeat Simple_repeat 2 36 0 2034 189 39 50 chr11 44176518 44176559 -106606994 + L1MA9 LINE L1 5784 5824 -488 2302 106 6 0 chr11 44176559 44176870 -106606683 + AluSq SINE Alu 1 313 0 2034 189 39 50 chr11 44176870 44177395 -106606158 + L1MA9 LINE L1 5824 6312 0 323 145 0 29 chr11 44177500 44177569 -106605984 + L1PA16 LINE L1 6084 6150 -16 360 353 35 6 chr11 44177861 44178034 -106605519 + MER5B DNA MER1_type 1 178 0 232 303 0 11 chr11 44178207 44178296 -106605257 + MER112 DNA MER1_type 165 252 -8 385 346 85 55 chr11 44178754 44179153 -106604400 - L2 LINE L2 -15 3257 2847 22 0 0 0 chr11 44179717 44179739 -106603814 + AT_rich Low_complexity Low_complexity 1 22 0 3610 158 29 11 chr11 44179844 44180542 -106603011 + MER50 LTR ERV1 1 710 -24 400 308 6 26 chr11 44181048 44181100 -106602453 - MIR SINE MIR 0 262 211 201 74 0 0 chr11 44181100 44181127 -106602426 + (TG)n Simple_repeat Simple_repeat 1 27 0 400 308 6 26 chr11 44181127 44181219 -106602334 - MIR SINE MIR -51 211 119 2073 139 3 7 chr11 44181219 44181520 -106602033 + AluSx SINE Alu 1 300 -12 299 272 15 44 chr11 44181602 44181738 -106601815 + CT-rich Low_complexity Low_complexity 1 132 0 1988 142 0 36 chr11 44181949 44182258 -106601295 + AluSx SINE Alu 1 298 -14 341 335 12 6 chr11 44182284 44182457 -106601096 + Charlie8 DNA MER1_type 85 258 -2159 275 286 67 17 chr11 44182705 44182824 -106600729 - MER117 DNA MER1_type -49 148 24 1972 228 75 35 chr11 44182825 44183158 -106600395 - MLT1E LTR MaLR 0 593 226 3997 167 83 14 chr11 44183158 44183931 -106599622 + LTR1B LTR ERV1 1 826 0 1972 228 75 35 chr11 44183931 44184167 -106599386 - MLT1E LTR MaLR -367 226 1 1280 194 15 109 chr11 44184475 44184878 -106598675 - MLT1A1 LTR MaLR 0 365 1 4450 158 46 20 chr11 44185004 44185809 -106597744 + LTR1B LTR ERV1 1 826 0 366 221 7 143 chr11 44186422 44186562 -106596991 + L2 LINE L2 3192 3312 -1 1273 243 68 20 chr11 44187179 44187623 -106595930 + MLT1C LTR MaLR 1 465 -2 1153 235 54 25 chr11 44187812 44188165 -106595388 - MLT1A1 LTR MaLR -2 363 1 248 325 66 25 chr11 44188224 44188510 -106595043 + L1ME LINE L1 5525 5822 -299 1071 141 66 0 chr11 44188552 44188765 -106594788 - L1MA6 LINE L1 0 6300 6074 1836 202 57 25 chr11 44188962 44189398 -106594155 + MLT1C LTR MaLR 1 450 -17 2069 122 3 0 chr11 44190065 44190361 -106593192 - AluSp SINE Alu -16 297 1 260 59 0 0 chr11 44190514 44190548 -106593005 - MADE1 DNA Mariner -19 61 28 332 122 0 0 chr11 44190559 44190608 -106592945 + MADE1 DNA Mariner 32 80 0 315 317 89 22 chr11 44190612 44190792 -106592761 + MLT1I LTR MaLR 91 282 -127 342 319 44 0 chr11 44191348 44191483 -106592070 + MER20B DNA MER1_type 24 164 -619 2380 128 8 16 chr11 44191571 44191946 -106591607 - THE1C LTR MaLR 0 375 4 269 310 70 39 chr11 44192816 44193074 -106590479 + HAL1 LINE L1 1371 1636 -871 886 48 79 8 chr11 44193679 44193805 -106589748 - MER85 DNA T2_type -4 135 1 940 124 37 19 chr11 44193934 44194095 -106589458 + AluY SINE Alu 148 311 0 898 339 28 18 chr11 44194347 44194804 -106588749 - LTR16B LTR ERVL 0 464 3 1462 249 38 25 chr11 44195301 44195746 -106587807 + MLT1C LTR MaLR 17 467 0 21 0 0 0 chr11 44195767 44195788 -106587765 + AT_rich Low_complexity Low_complexity 1 21 0 908 163 64 35 chr11 44195810 44196013 -106587540 - MER3 DNA MER1_type 0 209 1 2001 101 37 14 chr11 44196344 44196640 -106586913 + AluSp SINE Alu 1 303 -10 22 0 0 0 chr11 44196971 44196993 -106586560 + AT_rich Low_complexity Low_complexity 1 22 0 39 0 0 0 chr11 44197362 44197401 -106586152 + AT_rich Low_complexity Low_complexity 1 39 0 324 315 79 15 chr11 44197403 44197606 -106585947 + L1MB1 LINE L1 3656 3871 -2275 278 287 11 0 chr11 44197612 44197699 -106585854 + L2 LINE L2 2041 2128 -1186 433 185 240 27 chr11 44197716 44197862 -106585691 + MER5A DNA MER1_type 13 189 0 515 269 80 55 chr11 44197985 44198260 -106585293 + L2 LINE L2 2296 2577 -737 3159 172 13 7 chr11 44198454 44199000 -106584553 - MER44D DNA MER2_type 0 605 2 195 114 0 0 chr11 44200344 44200379 -106583174 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 1935 249 53 42 chr11 44200961 44201955 -106581598 - L1ME LINE L1 -667 6294 5171 943 300 46 71 chr11 44201968 44202768 -106580785 - L1ME LINE L1 -4371 2751 1972 335 281 20 59 chr11 44202820 44202894 -106580659 - L1ME LINE L1 -6192 231 165 2170 111 0 3 chr11 44202894 44203192 -106580361 + AluSg1 SINE Alu 1 297 -12 335 281 20 59 chr11 44203192 44203270 -106580283 - L1ME LINE L1 -6258 165 85 371 299 20 10 chr11 44203419 44203623 -106579930 - HAL1 LINE L1 -328 2179 1974 512 274 46 66 chr11 44203653 44203828 -106579725 + MER63A DNA MER1_type 18 190 -1498 1279 228 10 63 chr11 44203828 44204223 -106579330 - MLT1A2 LTR MaLR 0 374 1 512 274 46 66 chr11 44204223 44204244 -106579309 + MER63A DNA MER1_type 190 210 0 1127 289 121 43 chr11 44204294 44205279 -106578274 - HAL1 LINE L1 -613 1894 833 4344 181 12 4 chr11 44205307 44206246 -106577307 + L1MB1 LINE L1 4474 5420 -736 1161 204 17 0 chr11 44206351 44206586 -106576967 + L1PB4 LINE L1 5913 6151 -5 285 29 0 0 chr11 44207369 44207403 -106576150 + (CA)n Simple_repeat Simple_repeat 1 34 0 707 193 7 0 chr11 44207928 44208068 -106575485 - FLAM_C SINE Alu -2 141 1 3666 255 52 62 chr11 44208153 44209509 -106574044 + L1M3d LINE L1 6 1374 -4596 1937 146 0 0 chr11 44209509 44209838 -106573715 + AluSx SINE Alu 1 329 0 3666 255 52 62 chr11 44209838 44212084 -106571469 + L1M3d LINE L1 1374 3299 -2671 310 132 0 0 chr11 44212085 44212138 -106571415 + LTR9 LTR ERV1 1 53 -559 2706 194 39 2 chr11 44212138 44212675 -106570878 + L1MB1 LINE L1 5588 6144 -24 1490 161 41 8 chr11 44213896 44214163 -106569390 + AluJb SINE Alu 29 304 -8 21 57 0 0 chr11 44214429 44214464 -106569089 + AT_rich Low_complexity Low_complexity 1 35 0 671 301 37 20 chr11 44215230 44215480 -106568073 - L1ME3A LINE L1 -21 6083 5826 2386 77 0 3 chr11 44215480 44215790 -106567763 - AluY SINE Alu -2 309 1 671 301 37 20 chr11 44215790 44215838 -106567715 - L1ME3A LINE L1 -278 5826 5780 183 129 0 0 chr11 44215865 44215896 -106567657 + (CATA)n Simple_repeat Simple_repeat 2 32 0 241 235 118 0 chr11 44215932 44216017 -106567536 - L1ME3A LINE L1 -555 5549 5455 544 298 60 57 chr11 44216040 44216305 -106567248 - MLT1H LTR MaLR -241 308 43 1976 147 3 0 chr11 44216576 44216868 -106566685 + AluSg SINE Alu 1 293 -17 285 262 0 103 chr11 44217974 44218081 -106565472 - MLT1H LTR MaLR 0 549 454 1574 261 57 48 chr11 44218416 44219282 -106564271 - L1ME3A LINE L1 -951 5129 4257 2221 152 19 3 chr11 44219468 44219837 -106563716 - THE1C LTR MaLR 0 375 1 303 266 55 30 chr11 44220005 44220241 -106563312 - L1MDa LINE L1 -3770 2310 2096 778 270 89 60 chr11 44220241 44220689 -106562864 + LTR16B LTR ERVL 1 461 -3 303 266 55 30 chr11 44220689 44220745 -106562808 - L1MDa LINE L1 -3984 2096 2043 881 301 30 21 chr11 44221027 44221363 -106562190 - L1ME1 LINE L1 -6 6160 5822 402 305 14 60 chr11 44221374 44221745 -106561808 - L1MDa LINE L1 -4856 1224 906 233 308 71 5 chr11 44221865 44222063 -106561490 - L1MDa LINE L1 -5182 888 678 2214 98 10 10 chr11 44222357 44222664 -106560889 - AluY SINE Alu -4 307 1 1644 148 15 8 chr11 44222721 44222985 -106560568 - THE1A LTR MaLR 0 355 90 553 105 13 0 chr11 44223092 44223168 -106560385 - THE1A LTR MaLR -287 77 1 10926 95 5 48 chr11 44223168 44224820 -106558733 - THE1A-int LTR MaLR 0 1580 1 2472 110 6 3 chr11 44224820 44225174 -106558379 - THE1A LTR MaLR 0 355 1 1402 111 19 37 chr11 44226748 44227072 -106556481 + AluYb8 SINE Alu 1 318 0 3306 208 19 12 chr11 44227072 44227792 -106555761 - L1MD2 LINE L1 -72 6287 5563 771 294 189 21 chr11 44227851 44228270 -106555283 - L2 LINE L2 0 3313 2825 254 373 68 17 chr11 44228642 44228760 -106554793 + MIR SINE MIR 26 149 -113 446 147 21 21 chr11 44229439 44229534 -106554019 - AluSg/x SINE Alu -4 308 214 1471 197 7 7 chr11 44230194 44230478 -106553075 + AluSx SINE Alu 13 296 -16 1709 124 79 14 chr11 44230584 44230875 -106552678 + AluSg SINE Alu 1 310 0 236 30 90 30 chr11 44231152 44231219 -106552334 + (TATAA)n Simple_repeat Simple_repeat 3 73 0 2278 102 0 13 chr11 44231277 44231591 -106551962 - AluSx SINE Alu 0 312 3 24 91 0 0 chr11 44231773 44231839 -106551714 + AT_rich Low_complexity Low_complexity 1 66 0 2186 101 3 13 chr11 44231961 44232277 -106551276 + AluSq SINE Alu 1 313 0 217 264 83 41 chr11 44233428 44233549 -106550004 - MIR SINE MIR -37 225 100 566 286 59 20 chr11 44233679 44233882 -106549671 + MIR SINE MIR 52 262 0 991 156 6 0 chr11 44234044 44234204 -106549349 - MLT2B1 LTR ERVL -359 161 1 1962 196 16 0 chr11 44234242 44234609 -106548944 + MLT1B LTR MaLR 18 390 0 388 248 17 0 chr11 44234628 44234745 -106548808 - Charlie8 DNA MER1_type -2254 163 45 27 0 0 0 chr11 44235597 44235624 -106547929 + AT_rich Low_complexity Low_complexity 1 27 0 2050 191 64 12 chr11 44235652 44236075 -106547478 - MER65A LTR ERV1 0 445 1 2147 258 75 17 chr11 44236075 44237174 -106546379 - MER65A-int LTR ERV1 0 4871 3605 1888 226 126 42 chr11 44237186 44237213 -106546340 - MER65-int LTR ERV1 -939 5392 5369 1922 126 7 0 chr11 44237213 44237546 -106546007 + AluSc SINE Alu 1 335 0 1888 226 126 42 chr11 44237546 44238471 -106545082 - MER65-int LTR ERV1 -962 5369 4282 558 183 107 139 chr11 44238458 44238796 -106544757 - MER65-int LTR ERV1 -1913 4418 2729 * 1588 198 7 0 chr11 44238798 44239101 -106544452 + L1PB3 LINE L1 5847 6151 -3 1102 161 33 59 chr11 44239189 44239494 -106544059 - MER65-int LTR ERV1 -2572 4026 3730 852 180 10 40 chr11 44239573 44239773 -106543780 - MER65-int LTR ERV1 -2868 3730 3537 5914 187 69 90 chr11 44239856 44240471 -106543082 - MER65-int LTR ERV1 -2377 2494 1868 21 0 0 0 chr11 44240471 44240492 -106543061 + AT_rich Low_complexity Low_complexity 1 21 0 5914 187 69 90 chr11 44240492 44240521 -106543032 - MER65-int LTR ERV1 -3003 1868 1840 44 63 0 0 chr11 44240521 44240600 -106542953 + AT_rich Low_complexity Low_complexity 1 79 0 5914 187 69 90 chr11 44240600 44242756 -106540797 - MER65-int LTR ERV1 -3031 1840 417 2136 181 37 18 chr11 44243118 44243555 -106539998 - MER65A LTR ERV1 0 445 1 409 250 57 40 chr11 44243555 44243724 -106539829 + MER112 DNA MER1_type 74 248 -12 207 313 50 0 chr11 44243841 44243921 -106539632 - L2 LINE L2 -2454 860 777 239 254 0 17 chr11 44244085 44244144 -106539409 - L2 LINE L2 0 3313 3256 3397 330 142 25 chr11 44244270 44244387 -106539166 - L2 LINE L2 -103 3210 3108 2754 94 0 0 chr11 44244387 44244750 -106538803 + THE1B LTR MaLR 1 363 -1 3397 330 142 25 chr11 44244750 44247129 -106536424 - L2 LINE L2 -205 3108 425 270 153 0 0 chr11 44247132 44247191 -106536362 + (CAT)n Simple_repeat Simple_repeat 1 59 0 241 421 50 34 chr11 44248561 44248858 -106534695 - L2 LINE L2 -7 3265 2964 188 280 80 70 chr11 44249931 44250031 -106533522 - L2 LINE L2 -3 3269 3169 2216 96 0 7 chr11 44250185 44250518 -106533035 + AluY SINE Alu 1 311 0 206 379 42 21 chr11 44250518 44250613 -106532940 - L2 LINE L2 -223 3049 2953 241 337 35 100 chr11 44250911 44251400 -106532153 - L2 LINE L2 -687 2627 2171 1496 240 30 30 chr11 44251557 44251947 -106531606 - MLT1C LTR MaLR 0 467 78 1341 204 112 161 chr11 44251947 44252873 -106530680 - LTR1B LTR ERV1 0 1020 1 269 213 107 0 chr11 44252873 44252940 -106530613 - MLT1C LTR MaLR -385 82 8 325 368 8 0 chr11 44253419 44253536 -106530017 + MIR SINE MIR 66 183 -79 671 224 0 0 chr11 44253571 44253696 -106529857 + FLAM_A SINE Alu 1 125 -8 305 246 180 30 chr11 44255037 44255204 -106528349 - MLT1K LTR MaLR -33 555 364 207 224 0 41 chr11 44255553 44255602 -106527951 + CT-rich Low_complexity Low_complexity 3 49 0 29 0 0 0 chr11 44255644 44255673 -106527880 + AT_rich Low_complexity Low_complexity 1 29 0 459 349 50 9 chr11 44256332 44256550 -106527003 - MIR SINE MIR -34 228 2 247 278 86 18 chr11 44257765 44257878 -106525675 + MIR SINE MIR 73 191 -61 505 351 24 5 chr11 44257887 44258092 -106525461 - MIR SINE MIR 0 262 54 324 103 0 69 chr11 44258147 44258205 -106525348 + MADE1 DNA Mariner 14 67 -13 2035 126 0 7 chr11 44258647 44258941 -106524612 - AluSc SINE Alu -15 294 3 22 35 0 0 chr11 44260020 44260049 -106523504 + AT_rich Low_complexity Low_complexity 1 29 0 290 242 42 11 chr11 44260233 44260328 -106523225 + MER5C DNA MER1_type 57 154 -170 328 224 224 0 chr11 44260402 44260536 -106523017 + MER5C DNA MER1_type 161 324 0 220 39 0 0 chr11 44260669 44260695 -106522858 + (TG)n Simple_repeat Simple_repeat 1 26 0 383 118 0 15 chr11 44260695 44260763 -106522790 + (TA)n Simple_repeat Simple_repeat 1 67 0 373 228 331 0 chr11 44260853 44260980 -106522573 + MER5A DNA MER1_type 13 181 -8 363 284 0 11 chr11 44261727 44261822 -106521731 + MIR SINE MIR 31 124 -138 282 95 0 0 chr11 44261966 44262008 -106521545 + (TG)n Simple_repeat Simple_repeat 1 42 0 210 91 0 0 chr11 44262107 44262140 -106521413 + (TGAA)n Simple_repeat Simple_repeat 4 36 0 880 223 31 31 chr11 44263298 44263522 -106520031 - MER58A DNA MER1_type 0 224 1 235 167 0 0 chr11 44263524 44263560 -106519993 + MIR SINE MIR 216 251 -11 2481 63 0 0 chr11 44263857 44264158 -106519395 + AluY SINE Alu 1 301 -10 3806 186 33 1 chr11 44264298 44265077 -106518476 - L1 LINE L1 -983 5163 4360 2743 162 88 15 chr11 44265086 44265677 -106517876 + L1MA8 LINE L1 5656 6289 -2 305 344 65 30 chr11 44265701 44265931 -106517622 + L1M4c LINE L1 1471 1708 -4834 234 284 23 11 chr11 44265946 44266034 -106517519 + L1M4c LINE L1 1838 1926 -4614 24 32 0 0 chr11 44266256 44266287 -106517266 + AT_rich Low_complexity Low_complexity 1 31 0 345 179 126 11 chr11 44266367 44266462 -106517091 + L1M4c LINE L1 2444 2549 -3991 32 26 0 0 chr11 44266472 44266511 -106517042 + AT_rich Low_complexity Low_complexity 1 39 0 389 301 153 38 chr11 44266969 44267334 -106516219 + L1M4c LINE L1 3167 3573 -2967 2252 162 2 31 chr11 44267596 44268223 -106515330 + L1PA16 LINE L1 5007 5606 -560 1876 223 166 47 chr11 44268238 44269019 -106514534 + LTR28 LTR ERV1 8 972 -48 543 257 13 20 chr11 44269020 44269172 -106514381 + LTR28 LTR ERV1 869 1019 -1 3134 164 9 4 chr11 44269172 44269721 -106513832 + L1PA16 LINE L1 5610 6161 -5 361 373 28 0 chr11 44269793 44269970 -106513583 + L1M4c LINE L1 3921 4102 -2438 2172 115 13 0 chr11 44270009 44270314 -106513239 - AluSc SINE Alu 0 309 1 351 0 0 0 chr11 44270383 44270422 -106513131 + (TG)n Simple_repeat Simple_repeat 2 40 0 536 263 86 41 chr11 44270453 44270791 -106512762 + L1M4c LINE L1 4244 4596 -1944 300 258 33 132 chr11 44270956 44271138 -106512415 + L1ME2 LINE L1 28 191 -5879 407 311 67 37 chr11 44271285 44271678 -106511875 + L1ME2 LINE L1 408 808 -5275 2254 249 158 16 chr11 44271805 44272382 -106511171 + L1ME2 LINE L1 3596 4090 -1990 342 0 0 0 chr11 44272382 44272420 -106511133 + (CA)n Simple_repeat Simple_repeat 1 38 0 2254 249 158 16 chr11 44272420 44272650 -106510903 + L1ME2 LINE L1 4090 4286 -1794 2209 59 3 21 chr11 44272650 44272989 -106510564 + AluY SINE Alu 1 334 0 2254 249 158 16 chr11 44272989 44273257 -106510296 + L1ME2 LINE L1 4286 4826 -1254 189 171 0 0 chr11 44273755 44273790 -106509763 + (TATATG)n Simple_repeat Simple_repeat 2 36 0 195 100 0 0 chr11 44273790 44273820 -106509733 + (CA)n Simple_repeat Simple_repeat 2 31 0 731 237 117 59 chr11 44273912 44274270 -106509283 + L1ME2 LINE L1 5711 6089 -9 282 194 0 0 chr11 44274340 44274402 -106509151 + (CATA)n Simple_repeat Simple_repeat 3 64 0 5144 140 24 43 chr11 44274403 44275004 -106508549 + MER49 LTR ERV1 1 579 -344 1699 180 52 17 chr11 44275004 44275366 -106508187 + THE1C LTR MaLR 1 375 0 5144 140 24 43 chr11 44275366 44275702 -106507851 + MER49 LTR ERV1 579 920 -3 1480 199 4 4 chr11 44275702 44275983 -106507570 - AluJb SINE Alu -6 306 26 252 0 0 0 chr11 44276179 44276207 -106507346 + (CA)n Simple_repeat Simple_repeat 1 28 0 231 194 65 48 chr11 44277144 44277206 -106506347 - L2 LINE L2 0 3272 3210 311 237 32 11 chr11 44278019 44278112 -106505441 + CT-rich Low_complexity Low_complexity 1 95 0 555 78 0 0 chr11 44278660 44278737 -106504816 + (TTCC)n Simple_repeat Simple_repeat 4 80 0 555 78 0 0 chr11 44279440 44279517 -106504036 + (TTCC)n Simple_repeat Simple_repeat 4 80 0 281 329 57 32 chr11 44280685 44280843 -106502710 + MIR SINE MIR 26 187 -75 26 30 0 0 chr11 44282728 44282761 -106500792 + AT_rich Low_complexity Low_complexity 1 33 0 2036 183 30 30 chr11 44283289 44283721 -106499832 + MSTB1 LTR MaLR 1 432 0 1502 181 78 43 chr11 44284352 44284723 -106498830 - MLT1B LTR MaLR 0 390 7 290 249 69 110 chr11 44287127 44287300 -106496253 + MIR SINE MIR 50 215 -47 631 282 111 14 chr11 44287325 44287541 -106496012 + MIR SINE MIR 12 248 -14 570 268 29 14 chr11 44287554 44287692 -106495861 - MIR SINE MIR -110 152 13 212 337 223 0 chr11 44287845 44288011 -106495542 - MIR SINE MIR -58 204 2 1949 161 62 39 chr11 44288233 44288668 -106494885 + MER65A LTR ERV1 1 445 0 459 291 8 106 chr11 44288948 44289202 -106494351 + MLT1K LTR MaLR 19 247 -341 285 310 21 42 chr11 44289340 44289482 -106494071 + MLT1K LTR MaLR 448 586 -2 185 132 26 0 chr11 44290195 44290233 -106493320 + (TG)n Simple_repeat Simple_repeat 2 40 0 236 167 0 19 chr11 44290237 44290291 -106493262 + (TA)n Simple_repeat Simple_repeat 1 53 0 321 82 0 0 chr11 44290340 44290389 -106493164 + (CAAAA)n Simple_repeat Simple_repeat 4 52 0 368 339 23 0 chr11 44290852 44290982 -106492571 + MIR SINE MIR 20 152 -110 621 326 11 41 chr11 44291751 44292018 -106491535 - MIR SINE MIR 0 262 4 21 36 0 0 chr11 44292256 44292284 -106491269 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr11 44292348 44292369 -106491184 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr11 44292859 44292880 -106490673 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 825 101 8 0 chr11 44293286 44293415 -106490138 - Alu SINE Alu -6 304 175 223 286 135 95 chr11 44294155 44294407 -106489146 + MIR SINE MIR 1 262 0 504 250 101 0 chr11 44295023 44295171 -106488382 + MIR SINE MIR 38 200 -62 24 0 0 0 chr11 44295414 44295438 -106488115 + AT_rich Low_complexity Low_complexity 1 24 0 2229 93 10 0 chr11 44296186 44296487 -106487066 - AluY SINE Alu 0 311 8 196 295 42 74 chr11 44296607 44296702 -106486851 + L2 LINE L2 3137 3228 -44 192 355 0 16 chr11 44297025 44297087 -106486466 + MIR SINE MIR 20 80 -182 227 263 123 35 chr11 44297604 44297718 -106485835 - MLT1H LTR MaLR -424 125 2 316 279 114 77 chr11 44298194 44298491 -106485062 - MLT1H LTR MaLR -222 327 20 23 68 0 0 chr11 44298515 44298559 -106484994 + AT_rich Low_complexity Low_complexity 1 44 0 212 216 20 0 chr11 44300029 44300080 -106483473 + (TAA)n Simple_repeat Simple_repeat 1 52 0 319 301 121 54 chr11 44300096 44300335 -106483218 - MIR SINE MIR 0 262 8 22 70 0 0 chr11 44300486 44300529 -106483024 + AT_rich Low_complexity Low_complexity 1 43 0 283 298 138 70 chr11 44300730 44301159 -106482394 + L2 LINE L2 2855 3312 -1 368 326 122 0 chr11 44301448 44301620 -106481933 + LTR16C LTR ERVL 299 491 0 427 329 6 12 chr11 44301648 44301815 -106481738 + GA-rich Low_complexity Low_complexity 2 167 0 220 231 15 30 chr11 44301839 44301973 -106481580 + GA-rich Low_complexity Low_complexity 1 132 0 224 345 95 0 chr11 44302777 44302861 -106480692 + MIR SINE MIR 30 121 -87 183 42 0 0 chr11 44302928 44302952 -106480601 + (GGAGAA)n Simple_repeat Simple_repeat 5 28 0 33 43 0 0 chr11 44303033 44303080 -106480473 + AT_rich Low_complexity Low_complexity 1 47 0 298 306 166 6 chr11 44304214 44304371 -106479182 + MIR SINE MIR 53 234 -28 22 35 0 0 chr11 44304509 44304538 -106479015 + AT_rich Low_complexity Low_complexity 1 29 0 196 313 163 0 chr11 44304649 44304729 -106478824 - L2 LINE L2 -37 3276 3184 22 0 0 0 chr11 44305047 44305069 -106478484 + AT_rich Low_complexity Low_complexity 1 22 0 1007 354 15 21 chr11 44306404 44306932 -106476621 - ERVL LTR ERVL -1383 4271 3747 1107 196 30 113 chr11 44306976 44307374 -106476179 + MLT1A1 LTR MaLR 1 365 0 3460 223 3 0 chr11 44307375 44308058 -106475495 + MLT1A1-int LTR MaLR 2 686 -1049 315 320 49 8 chr11 44308069 44308191 -106475362 - ERVL LTR ERVL -1963 3033 2907 1054 343 51 28 chr11 44308233 44309050 -106474503 - ERVL LTR ERVL -2640 2845 2050 2387 57 0 0 chr11 44309210 44309514 -106474039 - AluY SINE Alu 0 304 1 1041 337 31 36 chr11 44309568 44310120 -106473433 - ERVL LTR ERVL -3974 1022 474 6723 111 11 5 chr11 44310317 44311348 -106472205 + L1MA2 LINE L1 5262 6298 -6 316 344 80 6 chr11 44311909 44312072 -106471481 - LTR16A LTR ERVL -154 296 122 256 394 48 12 chr11 44312724 44312889 -106470664 + MIR SINE MIR 50 220 -42 193 237 68 102 chr11 44313048 44313166 -106470387 + L2 LINE L2 3185 3298 -15 6609 32 0 0 chr11 44314173 44314999 -106468554 + L1PA3 LINE L1 5357 6182 0 193 258 16 141 chr11 44315202 44315330 -106468223 + MIR3 SINE MIR 4 115 -93 231 286 0 11 chr11 44315679 44315770 -106467783 - L1MC4 LINE L1 -1339 6703 6614 215 258 15 15 chr11 44315770 44315836 -106467717 + (CATATA)n Simple_repeat Simple_repeat 2 67 0 276 30 0 0 chr11 44316543 44316576 -106466977 + (TC)n Simple_repeat Simple_repeat 2 34 0 * 319 83 33 0 chr11 44316575 44316635 -106466918 + (TA)n Simple_repeat Simple_repeat 1 62 0 465 295 27 58 chr11 44316771 44317029 -106466524 + MIR SINE MIR 3 252 -10 277 330 0 0 chr11 44317355 44317446 -106466107 + (CATA)n Simple_repeat Simple_repeat 2 92 0 21 0 0 0 chr11 44317614 44317635 -106465918 + AT_rich Low_complexity Low_complexity 1 21 0 1867 128 31 3 chr11 44317684 44317974 -106465579 - AluSx SINE Alu -14 298 1 201 152 0 0 chr11 44318564 44318597 -106464956 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 2722 302 101 25 chr11 44319396 44320647 -106462906 + L2 LINE L2 650 2005 -1309 354 23 0 0 chr11 44320647 44320690 -106462863 + (TG)n Simple_repeat Simple_repeat 2 44 0 2722 302 101 25 chr11 44320690 44320743 -106462810 + L2 LINE L2 2005 2053 -1261 314 298 39 0 chr11 44320806 44320910 -106462643 + L2 LINE L2 2218 2325 -989 284 200 12 0 chr11 44320984 44321064 -106462489 + (TATATG)n Simple_repeat Simple_repeat 4 84 0 234 238 0 48 chr11 44321168 44321231 -106462322 - MLT1I LTR MaLR -58 351 292 323 194 14 0 chr11 44321277 44321349 -106462204 - MLT1D LTR MaLR 0 505 433 980 171 78 57 chr11 44321349 44321594 -106461959 + MER92B LTR ERV1 1 250 -386 712 191 6 87 chr11 44321593 44321776 -106461777 - MLT1E2 LTR MaLR -446 180 13 * 230 57 29 0 chr11 44321865 44321900 -106461653 + MLT1I LTR MaLR 98 133 -276 1421 252 33 14 chr11 44322144 44322505 -106461048 + MLT1F LTR MaLR 6 373 -169 270 177 0 81 chr11 44325676 44325738 -106457815 - L2 LINE L2 -5 3267 3211 303 278 107 83 chr11 44325840 44326092 -106457461 - MIR SINE MIR -4 258 1 642 334 73 16 chr11 44326589 44326957 -106456596 + MLT1I LTR MaLR 13 401 -8 236 157 39 0 chr11 44328430 44328481 -106455072 + CT-rich Low_complexity Low_complexity 3 55 0 189 344 115 21 chr11 44328886 44328982 -106454571 + MIR SINE MIR 35 139 -123 2030 199 122 0 chr11 44329090 44329516 -106454037 + MER66A LTR ERV1 1 478 0 6237 199 72 27 chr11 44329538 44331542 -106452011 + MER66A-int LTR ERV1 13 2167 -4509 * 13330 184 37 39 chr11 44331539 44332568 -106450985 + MER66A-int LTR ERV1 2338 3368 -3308 2131 108 4 0 chr11 44332568 44332847 -106450706 + AluSp SINE Alu 1 280 -33 291 28 0 0 chr11 44332847 44332883 -106450670 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 13330 184 37 39 chr11 44332883 44335660 -106447893 + MER66A-int LTR ERV1 3366 6238 -438 335 356 69 25 chr11 44335848 44336253 -106447300 - HAL1 LINE L1 -815 1692 1270 233 258 11 0 chr11 44336298 44336391 -106447162 + (TA)n Simple_repeat Simple_repeat 2 95 0 465 327 35 18 chr11 44336395 44336621 -106446932 - L1MEd LINE L1 -4971 1148 919 5184 191 34 20 chr11 44336630 44337885 -106445668 - L1MC1 LINE L1 -1 6612 5346 3108 264 56 14 chr11 44337887 44339163 -106444390 - L1MC1 LINE L1 -2433 3993 2664 15934 142 8 9 chr11 44339182 44345631 -106437922 - L1PA8 LINE L1 -17 6470 1 8449 181 103 57 chr11 44345648 44348178 -106435375 - L1MC1 LINE L1 -3915 2692 6 1366 197 17 0 chr11 44348169 44348468 -106435085 - L1MC3 LINE L1 -16 7769 7466 * 556 238 24 18 chr11 44348485 44348649 -106434904 - L1PB4 LINE L1 -22 6134 5970 905 161 0 0 chr11 44348749 44348904 -106434649 - L1PA15 LINE L1 -208 5957 5803 188 294 160 34 chr11 44349756 44349875 -106433678 - MIR SINE MIR -116 146 13 234 341 11 0 chr11 44350087 44350175 -106433378 - L2 LINE L2 0 3313 3225 537 269 35 56 chr11 44351584 44351781 -106431772 + MER20 DNA MER1_type 3 195 -24 2010 141 0 0 chr11 44351791 44352081 -106431472 + AluY SINE Alu 7 296 -15 2747 141 43 25 chr11 44352223 44352284 -106431269 + L1MA8 LINE L1 5722 5780 -511 342 67 0 0 chr11 44352284 44352329 -106431224 + (CA)n Simple_repeat Simple_repeat 2 46 0 2747 141 43 25 chr11 44352329 44352820 -106430733 + L1MA8 LINE L1 5780 6284 -7 180 111 0 0 chr11 44352820 44352847 -106430706 + (CATA)n Simple_repeat Simple_repeat 2 28 0 23 0 0 0 chr11 44352851 44352874 -106430679 + AT_rich Low_complexity Low_complexity 1 23 0 183 389 83 0 chr11 44353243 44353351 -106430202 - L2 LINE L2 0 3272 3156 1314 235 40 75 chr11 44353442 44353965 -106429588 + MLT1D LTR MaLR 1 505 0 574 337 114 45 chr11 44354051 44354648 -106428905 - L2 LINE L2 -217 3055 2422 2343 96 3 7 chr11 44355707 44356010 -106427543 - AluSp SINE Alu -11 302 1 385 240 94 0 chr11 44356158 44356254 -106427299 + MIR SINE MIR 71 175 -87 2009 120 24 10 chr11 44356496 44356788 -106426765 - AluSq SINE Alu -17 296 1 830 276 5 0 chr11 44357194 44357404 -106426149 - MER58A DNA MER1_type -13 211 1 180 284 8 119 chr11 44357652 44357786 -106425767 - MER5C DNA MER1_type -159 165 47 1395 227 25 44 chr11 44359550 44359955 -106423598 + MLT2C1 LTR ERVL 1 397 0 510 297 79 0 chr11 44360708 44360873 -106422680 - MER115 DNA AcHobo -314 379 202 222 205 0 0 chr11 44361376 44361415 -106422138 + GA-rich Low_complexity Low_complexity 3 41 0 584 185 53 13 chr11 44362176 44362327 -106421226 - L1MA10 LINE L1 -2 6332 6176 244 283 42 42 chr11 44362547 44362713 -106420840 - MER41B LTR ERV1 -210 425 260 3307 172 65 3 chr11 44362914 44363601 -106419952 - L1MB1 LINE L1 -6 6183 5454 670 273 35 46 chr11 44363655 44363915 -106419638 - MIR SINE MIR 0 262 6 316 252 118 34 chr11 44363954 44364073 -106419480 + MIR3 SINE MIR 10 138 -70 514 252 76 0 chr11 44364645 44364776 -106418777 + MER58B DNA MER1_type 192 332 -9 304 316 77 46 chr11 44364766 44364914 -106418639 + MLT1I LTR MaLR 27 169 -240 * 2256 86 10 7 chr11 44364914 44365218 -106418335 - AluY SINE Alu -4 307 3 304 316 77 46 chr11 44365218 44365395 -106418158 + MLT1I LTR MaLR 169 362 -47 255 61 0 0 chr11 44365573 44365606 -106417947 + (TA)n Simple_repeat Simple_repeat 1 33 0 432 55 0 0 chr11 44365606 44365661 -106417892 + (TG)n Simple_repeat Simple_repeat 2 56 0 298 297 106 47 chr11 44365739 44365975 -106417578 + MIR SINE MIR 7 256 -6 213 39 0 0 chr11 44366419 44366445 -106417108 + (TAGA)n Simple_repeat Simple_repeat 1 26 0 276 30 0 0 chr11 44366450 44366483 -106417070 + (CA)n Simple_repeat Simple_repeat 2 34 0 252 353 35 17 chr11 44366532 44366648 -106416905 - MIR3 SINE MIR -1 207 90 182 203 0 14 chr11 44367117 44367191 -106416362 + GA-rich Low_complexity Low_complexity 2 74 0 5199 140 22 17 chr11 44367833 44369451 -106414102 + L1PA13 LINE L1 4445 6156 -7 2322 59 21 3 chr11 44369765 44370055 -106413498 + AluY SINE Alu 1 295 -16 333 277 215 36 chr11 44370359 44370554 -106412999 + MIR SINE MIR 24 253 -9 188 296 111 64 chr11 44371949 44372121 -106411432 + MIR SINE MIR 32 211 -51 * 201 318 259 0 chr11 44372100 44372289 -106411264 - MIR SINE MIR -24 238 1 203 184 0 0 chr11 44372634 44372672 -106410881 + (TA)n Simple_repeat Simple_repeat 1 38 0 504 254 104 59 chr11 44373947 44374167 -106409386 - MIR SINE MIR -10 252 23 4353 130 62 12 chr11 44374319 44375067 -106408486 - LTR1 LTR ERV1 0 785 1 230 266 32 11 chr11 44376514 44376608 -106406945 + GA-rich Low_complexity Low_complexity 1 96 0 778 240 53 65 chr11 44376704 44377123 -106406430 + MLT1D LTR MaLR 31 467 0 230 286 130 26 chr11 44377213 44377367 -106406186 - L2 LINE L2 -125 3188 3019 233 338 96 7 chr11 44377419 44377555 -106405998 - MIR SINE MIR -74 188 41 1869 130 11 0 chr11 44378527 44378797 -106404756 + AluSg SINE Alu 1 273 -37 508 289 14 0 chr11 44378834 44378976 -106404577 - MIR SINE MIR 0 262 119 497 361 18 9 chr11 44379101 44379320 -106404233 + MIR SINE MIR 37 257 -5 1948 142 7 3 chr11 44379392 44379701 -106403852 - AluSq SINE Alu -3 310 1 236 281 55 31 chr11 44379844 44379972 -106403581 + MIR SINE MIR 132 262 0 278 299 49 62 chr11 44381019 44381163 -106402390 - MIR3 SINE MIR -65 143 2 243 256 86 61 chr11 44381166 44381295 -106402258 - MIR3 SINE MIR -37 171 39 407 328 125 48 chr11 44381448 44381783 -106401770 + L3 LINE CR1 1042 1402 -175 340 304 32 8 chr11 44381845 44381970 -106401583 + MIR3 SINE MIR 67 194 -14 201 389 35 18 chr11 44381989 44382102 -106401451 + L3 LINE CR1 1450 1564 -13 334 326 36 80 chr11 44382416 44382717 -106400836 - LTR67 LTR ERVL -169 388 101 7008 278 49 41 chr11 44382798 44386330 -106397223 + L1PA12 LINE L1 11 3585 -3999 4573 186 6 106 chr11 44386342 44387658 -106395895 + L1PA12 LINE L1 4434 5592 -1992 1895 135 52 3 chr11 44387658 44387947 -106395606 + AluSx SINE Alu 1 303 -9 4573 186 6 106 chr11 44387947 44388080 -106395473 + L1PA12 LINE L1 5592 5737 -1847 1512 165 0 7 chr11 44388126 44388399 -106395154 + L1PA15 LINE L1 5887 6157 -8 235 287 31 114 chr11 44388424 44388587 -106394966 - L2 LINE L2 -1270 2044 1908 2354 73 0 7 chr11 44388587 44388888 -106394665 - AluY SINE Alu -2 309 11 235 287 31 114 chr11 44388888 44388978 -106394575 - L2 LINE L2 -1406 1908 1812 1428 213 15 0 chr11 44389389 44389657 -106393896 - AluJo SINE Alu -9 303 32 2393 131 28 33 chr11 44389667 44390125 -106393428 - L1MA8 LINE L1 -6 6285 5830 212 211 0 0 chr11 44390591 44390629 -106392924 + L2 LINE L2 3235 3272 0 320 296 121 25 chr11 44391608 44391807 -106391746 + MIR SINE MIR 13 230 -32 219 276 17 0 chr11 44392212 44392270 -106391283 + L2 LINE L2 2584 2642 -672 306 0 0 0 chr11 44392425 44392459 -106391094 + (TTA)n Simple_repeat Simple_repeat 3 36 0 1122 109 0 0 chr11 44392459 44392615 -106390938 - L1PA5 LINE L1 -18 6136 5981 7579 49 15 3 chr11 44392615 44393610 -106389943 + L1M LINE L1 4342 5350 -812 1440 295 37 22 chr11 44393739 44394417 -106389136 - L1ME3A LINE L1 -203 6247 5560 763 275 113 39 chr11 44394461 44395003 -106388550 - L1ME3A LINE L1 -913 5513 4932 1127 264 71 45 chr11 44395003 44395382 -106388171 - MLT1D LTR MaLR 0 505 109 2390 38 14 3 chr11 44395382 44395674 -106387879 + AluY SINE Alu 1 295 -16 1127 264 71 45 chr11 44395674 44395786 -106387767 - MLT1D LTR MaLR -396 109 1 496 137 60 6 chr11 44395922 44396090 -106387463 + (TA)n Simple_repeat Simple_repeat 1 177 0 922 295 52 24 chr11 44396161 44396841 -106386712 - L1MCa LINE L1 -4622 1985 1088 3151 248 87 43 chr11 44396849 44398746 -106384807 + L1ME1 LINE L1 3794 5769 -397 905 233 49 17 chr11 44398794 44399187 -106384366 - MER54B LTR ERVL -111 682 236 718 169 8 0 chr11 44399185 44399309 -106384244 - MER54B LTR ERVL -661 132 8 * 1240 242 21 15 chr11 44399319 44399658 -106383895 + L1ME1 LINE L1 5781 6121 -45 1709 258 98 19 chr11 44399689 44400785 -106382768 + L1ME2 LINE L1 4383 5553 -609 1094 263 80 29 chr11 44400790 44401238 -106382315 + L1ME2 LINE L1 5604 6074 -90 3255 18 0 3 chr11 44401879 44402259 -106381294 - L1PA3 LINE L1 -4 6151 5773 1642 169 0 7 chr11 44403148 44403432 -106380121 + AluSp SINE Alu 2 283 -30 328 297 0 0 chr11 44403457 44403548 -106380005 - L1MC4 LINE L1 -1339 6703 6613 222 213 0 0 chr11 44404194 44404241 -106379312 + (CAGAGA)n Simple_repeat Simple_repeat 2 48 0 195 42 0 0 chr11 44405433 44405457 -106378096 + (TC)n Simple_repeat Simple_repeat 2 25 0 1682 260 65 28 chr11 44405643 44406212 -106377341 - MLT1E LTR MaLR -3 590 1 26 30 0 0 chr11 44406273 44406306 -106377247 + AT_rich Low_complexity Low_complexity 1 33 0 278 146 0 0 chr11 44406401 44406442 -106377111 - MER47A DNA MER2_type -1 365 325 1791 169 116 72 chr11 44406458 44406983 -106376570 + LTR10A LTR ERV1 1 548 -61 1606 144 0 0 chr11 44406991 44407234 -106376319 - MER47A DNA MER2_type -81 285 43 2097 120 3 16 chr11 44407334 44407642 -106375911 + AluSg SINE Alu 1 304 -6 22 0 0 0 chr11 44407687 44407709 -106375844 + AT_rich Low_complexity Low_complexity 1 22 0 233 226 62 85 chr11 44407912 44408089 -106375464 - L1MC4a LINE L1 -1578 6230 6058 558 231 94 68 chr11 44408137 44408444 -106375109 - L1MC4a LINE L1 -1847 5961 5647 666 309 67 14 chr11 44408598 44408821 -106374732 - LTR16A LTR ERVL -94 356 122 1090 363 41 34 chr11 44409019 44409974 -106373579 - ERVL LTR ERVL -381 5383 4422 509 307 49 53 chr11 44410252 44410496 -106373057 - MIR SINE MIR -18 244 2 185 355 60 81 chr11 44411585 44411917 -106371636 - L2 LINE L2 -42 3230 2906 1061 196 25 68 chr11 44412184 44412465 -106371088 + L1MA9 LINE L1 6008 6276 -36 239 239 84 48 chr11 44412605 44412772 -106370781 + L1ME4a LINE L1 5762 5934 -187 1880 161 0 7 chr11 44413228 44413532 -106370021 - AluSx SINE Alu -10 302 1 420 260 29 69 chr11 44414006 44414179 -106369374 - L2 LINE L2 -3 3310 3145 266 250 0 100 chr11 44414201 44414321 -106369232 + MER104 DNA Tc2 65 172 -8 270 211 118 0 chr11 44414702 44414778 -106368775 - MIR SINE MIR -54 208 124 1705 209 51 57 chr11 44415382 44415890 -106367663 + MLT1D LTR MaLR 1 505 0 647 304 42 14 chr11 44415898 44416115 -106367438 + MIR SINE MIR 36 258 -4 883 88 7 7 chr11 44416334 44416470 -106367083 + (GAAA)n Simple_repeat Simple_repeat 1 136 0 21 0 0 0 chr11 44418267 44418288 -106365265 + AT_rich Low_complexity Low_complexity 1 21 0 193 271 200 29 chr11 44418288 44418428 -106365125 + L2 LINE L2 3150 3313 0 188 375 52 0 chr11 44419173 44419269 -106364284 + MIR SINE MIR 32 132 -130 3176 189 20 3 chr11 44419341 44419935 -106363618 + MER6A DNA MER2_type 2 605 0 314 299 119 15 chr11 44421224 44421358 -106362195 + MIR SINE MIR 3 150 -112 336 372 101 12 chr11 44421811 44422069 -106361484 - L2 LINE L2 -222 3091 2811 1540 100 134 180 chr11 44422191 44422477 -106361076 - MSTA LTR MaLR 0 428 169 1910 147 3 0 chr11 44422477 44422763 -106360790 - AluSx SINE Alu -25 287 1 1540 100 134 180 chr11 44422763 44422925 -106360628 - MSTA LTR MaLR -259 169 1 248 375 31 0 chr11 44423209 44423305 -106360248 + L2 LINE L2 3169 3267 -5 282 306 33 56 chr11 44423335 44423515 -106360038 - MIR SINE MIR -28 234 59 214 222 0 32 chr11 44424715 44424778 -106358775 + T-rich Low_complexity Low_complexity 3 63 0 414 134 0 0 chr11 44426263 44426330 -106357223 + (TA)n Simple_repeat Simple_repeat 1 67 0 301 294 32 8 chr11 44426429 44426555 -106356998 + (CATA)n Simple_repeat Simple_repeat 3 131 0 445 211 24 106 chr11 44426697 44426820 -106356733 - MLT1I LTR MaLR -15 611 278 553 254 15 0 chr11 44427525 44427659 -106355894 + MLT1J2 LTR MaLR 47 182 -268 1027 231 14 9 chr11 44428117 44428338 -106355215 + MER58A DNA MER1_type 1 222 -2 279 292 95 42 chr11 44428664 44428832 -106354721 + MIR SINE MIR 86 262 0 23 0 0 0 chr11 44429005 44429028 -106354525 + AT_rich Low_complexity Low_complexity 1 23 0 33 0 0 0 chr11 44429218 44429251 -106354302 + AT_rich Low_complexity Low_complexity 1 33 0 3215 118 2 0 chr11 44429256 44429729 -106353824 - L1P LINE L1 -1131 5015 4542 26 0 0 0 chr11 44429735 44429761 -106353792 + AT_rich Low_complexity Low_complexity 1 26 0 245 180 0 16 chr11 44429813 44429874 -106353679 + (TA)n Simple_repeat Simple_repeat 1 60 0 22 0 0 0 chr11 44430469 44430491 -106353062 + AT_rich Low_complexity Low_complexity 1 22 0 358 331 16 0 chr11 44432165 44432286 -106351267 + MLT1K LTR MaLR 160 282 -306 226 298 0 32 chr11 44432723 44432817 -106350736 + (CATA)n Simple_repeat Simple_repeat 4 94 0 267 31 0 0 chr11 44433247 44433279 -106350274 + (CA)n Simple_repeat Simple_repeat 1 32 0 1870 159 27 57 chr11 44433781 44434222 -106349331 - L1MA7 LINE L1 -2 6289 5862 184 316 84 76 chr11 44434477 44434834 -106348719 + L2 LINE L2 2211 2570 -744 2221 93 17 0 chr11 44435010 44435301 -106348252 - AluSq SINE Alu -16 297 2 191 321 24 12 chr11 44438670 44438754 -106344799 - MER5A DNA MER1_type -78 111 27 265 284 32 53 chr11 44438820 44438915 -106344638 + L2 LINE L2 3180 3272 0 1783 189 100 85 chr11 44440162 44440670 -106342883 - LTR53 LTR ERVL -3 516 1 812 262 86 0 chr11 44441852 44442073 -106341480 - L1ME1 LINE L1 -11 6155 5916 277 293 131 10 chr11 44442125 44442224 -106341329 - MER94 DNA DNA -10 124 14 315 0 0 0 chr11 44442254 44442289 -106341264 + (CA)n Simple_repeat Simple_repeat 2 36 0 239 266 29 93 chr11 44442608 44442747 -106340806 + L3 LINE CR1 1433 1562 -15 269 286 150 0 chr11 44442821 44442961 -106340592 + MIR SINE MIR 102 262 0 1092 313 41 33 chr11 44443203 44443663 -106339890 - MER115 DNA AcHobo -9 684 221 477 297 35 30 chr11 44443917 44444119 -106339434 + MLT1J2 LTR MaLR 92 294 -156 312 70 0 0 chr11 44444250 44444293 -106339260 + (TG)n Simple_repeat Simple_repeat 2 44 0 483 69 0 0 chr11 44444396 44444468 -106339085 + (TAAA)n Simple_repeat Simple_repeat 4 75 0 225 154 0 0 chr11 44444476 44444515 -106339038 + (TGAA)n Simple_repeat Simple_repeat 2 40 0 1487 212 55 23 chr11 44444999 44445292 -106338261 - MLT1A1 LTR MaLR -8 357 50 2198 128 3 0 chr11 44445292 44445597 -106337956 - AluSq SINE Alu -7 306 1 1487 212 55 23 chr11 44445597 44445648 -106337905 - MLT1A1 LTR MaLR -315 50 2 22 35 0 0 chr11 44446200 44446229 -106337324 + AT_rich Low_complexity Low_complexity 1 29 0 207 0 0 0 chr11 44446268 44446291 -106337262 + (A)n Simple_repeat Simple_repeat 1 23 0 22 35 0 0 chr11 44447212 44447241 -106336312 + AT_rich Low_complexity Low_complexity 1 29 0 216 0 0 0 chr11 44447280 44447304 -106336249 + (A)n Simple_repeat Simple_repeat 1 24 0 1190 311 38 17 chr11 44448264 44448682 -106334871 - LTR16A LTR ERVL -8 442 16 280 312 72 8 chr11 44449404 44449529 -106334024 - MIR SINE MIR -128 134 2 402 258 75 38 chr11 44449761 44449947 -106333606 - L2 LINE L2 -8 3305 3113 314 286 248 12 chr11 44450038 44450199 -106333354 + MIR SINE MIR 64 262 0 204 97 0 0 chr11 44450764 44450795 -106332758 + (TTTTTG)n Simple_repeat Simple_repeat 2 32 0 225 0 0 0 chr11 44451122 44451147 -106332406 + (T)n Simple_repeat Simple_repeat 1 25 0 5031 157 53 2 chr11 44451410 44452302 -106331251 + L1MC1 LINE L1 232 1168 -5258 436 237 94 31 chr11 44452301 44452525 -106331028 - L1M4 LINE L1 -1662 4484 4247 * 3579 104 6 0 chr11 44452533 44453033 -106330520 - L1PA11 LINE L1 -1 6173 5671 1066 78 0 0 chr11 44453035 44453198 -106330355 + L1PA5 LINE L1 6003 6165 0 4273 182 32 22 chr11 44453199 44453949 -106329604 + L1MA7 LINE L1 1179 1920 -4651 411 56 0 0 chr11 44453949 44454003 -106329550 + (CA)n Simple_repeat Simple_repeat 1 54 0 4273 182 32 22 chr11 44454003 44454393 -106329160 + L1MA7 LINE L1 1920 6452 -119 2121 132 65 11 chr11 44454394 44454749 -106328804 - THE1C LTR MaLR -1 374 1 9888 128 22 16 chr11 44454749 44456320 -106327233 - THE1C-int LTR MaLR 0 1580 2 1311 159 5 0 chr11 44456321 44456522 -106327031 - THE1C LTR MaLR 0 375 174 1328 146 9 9 chr11 44456623 44456842 -106326711 - THE1C LTR MaLR -155 220 2 475 188 0 26 chr11 44456842 44456959 -106326594 + L1MA8 LINE L1 6167 6280 -11 999 148 132 11 chr11 44457005 44457371 -106326182 + L1MC1 LINE L1 1448 1947 -4479 5025 255 62 18 chr11 44457374 44459243 -106324310 + L1MC1 LINE L1 2726 4512 -2101 1569 97 0 23 chr11 44459243 44459460 -106324093 + AluY SINE Alu 1 212 -99 5025 255 62 18 chr11 44459460 44461220 -106322333 + L1MC1 LINE L1 4512 6613 0 1060 286 109 55 chr11 44461392 44461861 -106321692 - L2 LINE L2 0 3313 2820 324 355 60 14 chr11 44461995 44462212 -106321341 - MIR SINE MIR -30 232 6 216 0 0 0 chr11 44462335 44462359 -106321194 + (TG)n Simple_repeat Simple_repeat 2 25 0 325 279 57 95 chr11 44462406 44462668 -106320885 + MIR SINE MIR 3 254 -8 790 333 132 21 chr11 44463701 44464323 -106319230 - L2 LINE L2 -375 2939 2249 22 56 0 0 chr11 44465530 44465566 -106317987 + AT_rich Low_complexity Low_complexity 1 36 0 1532 205 23 3 chr11 44466530 44466832 -106316721 - AluJo SINE Alu -2 310 3 483 209 88 40 chr11 44466858 44467006 -106316547 - MER20 DNA MER1_type -1 218 64 337 39 39 0 chr11 44467008 44467059 -106316494 + (CAAAAA)n Simple_repeat Simple_repeat 3 55 0 395 268 0 0 chr11 44518669 44518766 -106264787 - L1MD2 LINE L1 -477 5882 5786 835 234 45 0 chr11 44518768 44518969 -106264584 + MLT2B1 LTR ERVL 1 210 -310 712 199 9 109 chr11 44518989 44519148 -106264405 + MLT2B1 LTR ERVL 331 466 -54 180 77 0 0 chr11 44519148 44519174 -106264379 + (TG)n Simple_repeat Simple_repeat 2 27 0 712 199 9 109 chr11 44519174 44519225 -106264328 + MLT2B1 LTR ERVL 466 520 0 1804 231 9 5 chr11 44519226 44519658 -106263895 - L1MD2 LINE L1 -572 5787 5354 406 296 71 50 chr11 44519659 44519939 -106263614 + L1M4 LINE L1 3176 3461 -2685 1438 228 24 12 chr11 44519947 44520281 -106263272 + L1M4 LINE L1 5423 5760 -418 1055 238 55 97 chr11 44520279 44520859 -106262694 - L1MD2 LINE L1 -777 5369 4813 * 2023 134 13 0 chr11 44520859 44521166 -106262387 - AluY SINE Alu 0 311 1 1055 238 55 97 chr11 44521166 44521185 -106262368 - L1MD2 LINE L1 -1333 4813 4795 * 1220 271 79 24 chr11 44521169 44522222 -106261331 + L1MEc LINE L1 1826 2904 -3311 2477 65 0 3 chr11 44522222 44522531 -106261022 + AluY SINE Alu 1 308 -3 1220 271 79 24 chr11 44522531 44522585 -106260968 + L1MEc LINE L1 2904 2954 -3261 877 313 24 12 chr11 44522672 44523086 -106260467 + L1MEc LINE L1 3592 4013 -2202 7746 17 0 3 chr11 44523086 44524302 -106259251 + L1PA3 LINE L1 4939 6151 -4 6254 135 0 18 chr11 44524417 44525456 -106258097 + HERVH LTR ERV1 1976 2995 -4718 985 120 7 0 chr11 44525435 44525585 -106257968 + HERVH LTR ERV1 3140 3290 -4423 * 989 149 6 6 chr11 44525575 44525736 -106257817 + HERVH LTR ERV1 3492 3652 -4061 * 4629 61 3 8 chr11 44525728 44526339 -106257214 + HERVH LTR ERV1 7106 7713 0 1501 118 74 118 chr11 44526339 44526744 -106256809 + LTR7 LTR ERV1 1 387 -63 414 0 0 0 chr11 44526761 44526807 -106256746 + (CA)n Simple_repeat Simple_repeat 1 46 0 197 413 31 22 chr11 44526808 44527038 -106256515 + MIR SINE MIR 19 252 -10 489 294 61 40 chr11 44527198 44527426 -106256127 + L2 LINE L2 1764 1996 -1318 1428 218 11 0 chr11 44527540 44527824 -106255729 + AluJo SINE Alu 12 298 -14 243 268 0 0 chr11 44527916 44527972 -106255581 - L2 LINE L2 -6 3307 3252 * 528 343 93 45 chr11 44527971 44528414 -106255139 + L2 LINE L2 2128 2591 -723 463 163 12 0 chr11 44528446 44528532 -106255021 + L1MA9 LINE L1 6173 6259 -53 356 217 11 0 chr11 44528543 44528635 -106254918 + (CA)n Simple_repeat Simple_repeat 2 94 0 1162 231 85 0 chr11 44528693 44528987 -106254566 - MER5C DNA MER1_type -5 319 1 1388 161 18 18 chr11 44529032 44529860 -106253693 + L1MC1 LINE L1 5429 6320 -13 306 0 0 0 chr11 44529860 44529894 -106253659 + (TG)n Simple_repeat Simple_repeat 2 35 0 341 216 14 0 chr11 44530182 44530256 -106253297 + MER116 DNA Mariner 1 75 -5 198 0 0 0 chr11 44531639 44531661 -106251892 + (TTTTTA)n Simple_repeat Simple_repeat 3 24 0 1521 150 8 0 chr11 44531662 44531908 -106251645 - L1PB4 LINE L1 -3 6153 5906 722 305 55 9 chr11 44532076 44532420 -106251133 - L1PB4 LINE L1 -15 6141 5782 246 174 0 0 chr11 44532503 44532549 -106251004 + (TATG)n Simple_repeat Simple_repeat 3 48 0 1882 138 14 34 chr11 44532549 44532898 -106250655 - L1PB4 LINE L1 -365 5791 5450 747 198 69 230 chr11 44533001 44533375 -106250178 + MLT1E LTR MaLR 271 520 -73 2148 97 7 3 chr11 44533375 44533664 -106249889 - AluSp SINE Alu -21 292 3 747 198 69 230 chr11 44533664 44533723 -106249830 + MLT1E LTR MaLR 520 587 -6 22 35 0 0 chr11 44534417 44534446 -106249107 + AT_rich Low_complexity Low_complexity 1 29 0 704 275 94 48 chr11 44534599 44535389 -106248164 + L1MEc LINE L1 1108 1933 -4463 476 244 129 4 chr11 44535449 44535674 -106247879 + L1MEc LINE L1 2025 2277 -4119 6540 108 23 24 chr11 44535674 44536474 -106247079 + L1MA1 LINE L1 5257 6057 -245 2637 19 7 0 chr11 44536474 44536783 -106246770 + AluYa5 SINE Alu 1 311 0 6540 108 23 24 chr11 44536783 44537029 -106246524 + L1MA1 LINE L1 6057 6302 0 24 32 0 0 chr11 44537029 44537060 -106246493 + AT_rich Low_complexity Low_complexity 1 31 0 1409 77 0 6 chr11 44537105 44537286 -106246267 - AluY SINE Alu -131 180 1 1777 291 130 10 chr11 44537360 44538659 -106244894 + L1MEc LINE L1 2385 3839 -2376 2300 91 0 3 chr11 44538782 44539102 -106244451 - L1PA10 LINE L1 -5 6163 5845 3215 103 39 0 chr11 44539104 44539697 -106243856 + L1P4 LINE L1 5141 5754 -414 1790 185 0 0 chr11 44539779 44540077 -106243476 - AluJo SINE Alu -14 298 1 27 29 0 0 chr11 44540081 44540115 -106243438 + AT_rich Low_complexity Low_complexity 1 34 0 234 297 0 0 chr11 44540115 44540189 -106243364 + L1ME3 LINE L1 6089 6162 0 286 378 16 42 chr11 44540223 44540416 -106243137 - MLT1I LTR MaLR -108 301 114 1206 178 5 0 chr11 44540921 44541118 -106242435 - MER58A DNA MER1_type -15 209 12 287 325 47 35 chr11 44541143 44541312 -106242241 - MIR3 SINE MIR -11 197 27 265 295 24 72 chr11 44541664 44541871 -106241682 - L1MEc LINE L1 -5132 1129 933 291 281 48 30 chr11 44541916 44542083 -106241470 - L1MEc LINE L1 -5186 884 715 2114 179 14 43 chr11 44542824 44543265 -106240288 + MSTA LTR MaLR 1 428 0 387 321 179 24 chr11 44543567 44543907 -106239646 - LTR16A1 LTR ERVL -10 447 55 1746 170 168 11 chr11 44545450 44545820 -106237733 - MSTA LTR MaLR 0 428 1 8827 150 13 38 chr11 44545820 44546848 -106236705 - MSTA-int LTR MaLR 0 1580 605 2092 138 0 0 chr11 44546848 44547153 -106236400 - AluSx SINE Alu -7 305 1 8827 150 13 38 chr11 44547153 44547741 -106235812 - MSTA-int LTR MaLR -975 605 4 1643 159 136 60 chr11 44547745 44548142 -106235411 - MSTA LTR MaLR -1 427 1 5919 103 12 11 chr11 44548944 44549845 -106233708 - L1PA13 LINE L1 -4 6159 5258 733 265 81 27 chr11 44550053 44550351 -106233202 + L1ME3A LINE L1 5847 6160 -10 276 374 69 38 chr11 44551017 44551148 -106232405 - L2 LINE L2 -5 3267 3133 475 284 39 65 chr11 44553157 44553312 -106230241 - LTR33 LTR ERVL -336 185 35 2402 83 0 3 chr11 44553312 44553624 -106229929 + AluY SINE Alu 1 311 0 705 237 40 0 chr11 44553966 44554118 -106229435 - FRAM SINE Alu -8 158 1 483 277 53 10 chr11 44554962 44555167 -106228386 - MLT1J2 LTR MaLR -163 283 68 210 118 0 0 chr11 44555401 44555435 -106228118 + (CA)n Simple_repeat Simple_repeat 2 35 0 1447 194 110 42 chr11 44555495 44555903 -106227650 + MER63B DNA MER1_type 1 436 0 23 0 0 0 chr11 44556060 44556083 -106227470 + AT_rich Low_complexity Low_complexity 1 23 0 278 311 16 114 chr11 44556739 44556993 -106226560 + MLT1I LTR MaLR 59 287 -122 923 178 0 0 chr11 44557425 44557588 -106225965 + L1PB4 LINE L1 5994 6156 0 227 222 0 0 chr11 44557630 44557675 -106225878 - L1MC4 LINE L1 -1340 6702 6658 1551 101 0 5 chr11 44557676 44557884 -106225669 - AluSg/x SINE Alu -18 292 86 609 115 0 0 chr11 44557886 44557973 -106225580 + AluS SINE Alu 11 97 -216 7119 49 11 1 chr11 44558479 44560154 -106223399 + L1PA5 LINE L1 4465 6154 0 306 261 90 96 chr11 44560677 44560865 -106222688 - L1MEd LINE L1 -4885 1234 1048 1211 191 64 69 chr11 44560901 44561293 -106222260 + MLT1B LTR MaLR 1 390 0 21 0 0 0 chr11 44561892 44561913 -106221640 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr11 44562868 44562896 -106220657 + AT_rich Low_complexity Low_complexity 1 28 0 213 175 0 0 chr11 44563366 44563406 -106220147 + A-rich Low_complexity Low_complexity 1 40 0 1924 181 17 50 chr11 44563821 44564224 -106219329 + MLT1B LTR MaLR 1 390 0 24 0 0 0 chr11 44564504 44564528 -106219025 + AT_rich Low_complexity Low_complexity 1 24 0 497 306 41 12 chr11 44564687 44564857 -106218696 - MIR SINE MIR -82 180 6 1282 265 103 33 chr11 44565052 44565819 -106217734 + L1ME1 LINE L1 3951 4771 -1375 252 191 0 15 chr11 44565819 44565887 -106217666 + (TTAA)n Simple_repeat Simple_repeat 1 67 0 228 200 22 0 chr11 44565899 44565944 -106217609 - L1M4 LINE L1 -1381 4765 4720 8943 215 40 15 chr11 44565995 44567237 -106216316 + L1MA7 LINE L1 2238 3564 -2582 1578 179 29 4 chr11 44567237 44567535 -106216018 + AluSx SINE Alu 1 305 0 8943 215 40 15 chr11 44567535 44568563 -106214990 + L1MA7 LINE L1 3564 4565 -1581 1934 198 50 19 chr11 44568563 44568982 -106214571 + MSTB1 LTR MaLR 1 432 0 2677 219 10 3 chr11 44568986 44569571 -106213982 + MSTB1-int LTR MaLR 5 593 -1058 2797 181 66 13 chr11 44569573 44569889 -106213664 + L1MA7 LINE L1 5459 5757 -534 1636 181 3 32 chr11 44569889 44570198 -106213355 + AluJb SINE Alu 1 300 -12 2797 181 66 13 chr11 44570198 44570561 -106212992 + L1MA7 LINE L1 5757 6280 -11 2129 269 51 38 chr11 44570596 44571649 -106211904 + L1ME1 LINE L1 5040 6108 -58 230 209 27 27 chr11 44571652 44571762 -106211791 + (CATA)n Simple_repeat Simple_repeat 2 111 0 2661 288 129 44 chr11 44571804 44573649 -106209904 + L1M4 LINE L1 2217 4341 -1805 1976 133 0 20 chr11 44573649 44573942 -106209611 + AluSx SINE Alu 3 289 -23 2661 288 129 44 chr11 44573942 44574653 -106208900 + L1M4 LINE L1 4341 4990 -1156 313 301 0 19 chr11 44575122 44575225 -106208328 + GA-rich Low_complexity Low_complexity 4 104 0 26 50 0 0 chr11 44575350 44575390 -106208163 + AT_rich Low_complexity Low_complexity 1 40 0 1479 129 16 65 chr11 44575509 44575719 -106207834 - L1MA4 LINE L1 0 6300 6108 2318 57 0 17 chr11 44575719 44576019 -106207534 - AluY SINE Alu -16 295 1 1479 129 16 65 chr11 44576019 44576118 -106207435 - L1MA4 LINE L1 -192 6108 6006 225 349 0 0 chr11 44576462 44576525 -106207028 + L3 LINE CR1 1513 1575 -2 541 307 47 7 chr11 44577504 44577654 -106205899 + MIR3 SINE MIR 26 181 -27 259 306 9 18 chr11 44578313 44578424 -106205129 + LTR33 LTR ERVL 1 110 -411 255 409 0 0 chr11 44578580 44578690 -106204863 + LTR33 LTR ERVL 301 410 -111 1114 84 0 0 chr11 44578701 44578843 -106204710 - AluSp SINE Alu -19 294 153 618 322 47 44 chr11 44578983 44579300 -106204253 - MLT1K LTR MaLR -201 387 70 514 332 85 7 chr11 44579633 44580093 -106203460 + L2 LINE L2 2763 3270 -2 24 96 0 0 chr11 44580212 44580285 -106203268 + AT_rich Low_complexity Low_complexity 1 73 0 532 297 26 51 chr11 44580698 44580962 -106202591 + MIR SINE MIR 10 262 0 311 335 19 31 chr11 44581166 44581327 -106202226 + MIR SINE MIR 104 262 0 224 282 106 0 chr11 44582351 44582436 -106201117 - L2 LINE L2 -15 3298 3205 361 325 49 16 chr11 44582466 44582589 -106200964 + L2 LINE L2 3138 3264 -8 278 349 24 75 chr11 44583175 44583470 -106200083 - L2 LINE L2 0 3272 2993 505 368 81 10 chr11 44583484 44584081 -106199472 + L2 LINE L2 2615 3256 -16 1001 235 0 0 chr11 44584204 44584400 -106199153 - MLT1B LTR MaLR -8 382 187 303 253 53 0 chr11 44584403 44584478 -106199075 - MER2 DNA MER2_type 0 345 267 1034 138 122 5 chr11 44584560 44584749 -106198804 - MER2 DNA MER2_type -134 211 1 869 191 67 6 chr11 44584749 44584925 -106198628 - MLT1B LTR MaLR -201 189 3 540 296 50 86 chr11 44585092 44585568 -106197985 - MLT1J LTR MaLR -36 475 17 220 136 15 15 chr11 44585912 44585978 -106197575 + (TAAA)n Simple_repeat Simple_repeat 3 68 0 202 367 78 0 chr11 44586068 44586158 -106197395 + MIR SINE MIR 86 182 -80 476 351 0 26 chr11 44586258 44586449 -106197104 + MIR SINE MIR 66 251 -11 666 255 62 56 chr11 44587565 44587922 -106195631 - L1MC4 LINE L1 -541 7501 7143 310 207 17 0 chr11 44589882 44589940 -106193613 - L2 LINE L2 0 3272 3214 1012 252 64 19 chr11 44590224 44590585 -106192968 - L1ME2 LINE L1 -213 5951 5575 224 312 170 0 chr11 44590600 44590741 -106192812 + MIR SINE MIR 98 262 0 23 0 0 0 chr11 44590757 44590780 -106192773 + AT_rich Low_complexity Low_complexity 1 23 0 273 254 15 15 chr11 44590894 44590961 -106192592 - MIR3 SINE MIR -34 174 108 606 343 58 0 chr11 44591001 44591208 -106192345 - MIR SINE MIR -42 220 2 349 311 63 32 chr11 44591944 44592171 -106191382 - MLT1I LTR MaLR -181 228 1 418 326 76 0 chr11 44592291 44592463 -106191090 - MIR SINE MIR -12 250 66 387 350 64 0 chr11 44592777 44592934 -106190619 - MIR SINE MIR -89 173 7 403 315 27 20 chr11 44593395 44593544 -106190009 - L2 LINE L2 -2 3311 3162 2357 77 0 0 chr11 44593593 44593893 -106189660 + AluY SINE Alu 10 309 -2 222 214 57 0 chr11 44593900 44593970 -106189583 + (TAGA)n Simple_repeat Simple_repeat 3 76 0 304 330 35 26 chr11 44594006 44594121 -106189432 - L2 LINE L2 -240 3073 2958 605 284 214 12 chr11 44594176 44594578 -106188975 + L2 LINE L2 2209 2691 -623 359 192 13 0 chr11 44594648 44594726 -106188827 + L1MA7 LINE L1 5976 6054 -237 399 333 7 14 chr11 44594755 44594902 -106188651 + L2 LINE L2 2799 2944 -370 229 308 90 0 chr11 44594933 44595011 -106188542 + L2 LINE L2 3225 3309 -4 2018 103 0 0 chr11 44595013 44595284 -106188269 - AluSx SINE Alu -41 271 1 210 288 50 93 chr11 44595520 44595659 -106187894 + MIR3 SINE MIR 13 145 -63 182 310 42 78 chr11 44596807 44596949 -106186604 + MIR3 SINE MIR 10 146 -62 26 0 0 0 chr11 44597128 44597154 -106186399 + AT_rich Low_complexity Low_complexity 1 26 0 1999 133 14 0 chr11 44597254 44597561 -106185992 - AluSx SINE Alu 0 311 1 274 379 65 30 chr11 44598130 44598362 -106185191 + L2 LINE L2 3032 3271 -1 198 167 0 0 chr11 44598860 44598896 -106184657 + (CATA)n Simple_repeat Simple_repeat 1 36 0 257 241 0 11 chr11 44599848 44599935 -106183618 + (TA)n Simple_repeat Simple_repeat 1 86 0 1639 196 22 30 chr11 44600152 44600520 -106183033 + MLT1A1 LTR MaLR 1 365 0 866 217 24 16 chr11 44600581 44600789 -106182764 + MLT1D LTR MaLR 218 445 -60 715 260 29 6 chr11 44600857 44601030 -106182523 - MLT1D LTR MaLR -328 177 1 390 307 128 24 chr11 44601065 44601316 -106182237 - L1MC/D LINE L1 -2258 5550 5274 402 283 67 84 chr11 44601365 44601768 -106181785 - L1MC/D LINE L1 -993 5153 4758 348 308 43 54 chr11 44601905 44602181 -106181372 - L1MC/D LINE L1 -3625 2521 2249 464 266 30 18 chr11 44603570 44603739 -106179814 - LTR37B LTR ERV1 -18 450 280 3046 102 20 13 chr11 44603747 44604198 -106179355 - L1PA10 LINE L1 -31 6137 5684 4010 147 24 4 chr11 44604225 44604900 -106178653 + L1PA16 LINE L1 5476 6163 -3 683 214 14 101 chr11 44604902 44605178 -106178375 - LTR37B LTR ERV1 -216 252 1 2150 113 0 25 chr11 44605853 44606172 -106177381 - AluSq SINE Alu -2 311 1 267 281 29 101 chr11 44606175 44606314 -106177239 + MIR3 SINE MIR 47 175 -33 716 231 102 22 chr11 44606342 44606645 -106176908 - LTR16A LTR ERVL -68 382 16 1724 128 4 0 chr11 44607157 44607423 -106176130 + L1PA13 LINE L1 5897 6163 0 2374 89 0 0 chr11 44608010 44608314 -106175239 - AluY SINE Alu -7 304 1 252 331 84 16 chr11 44608361 44608545 -106175008 - MIR SINE MIR -50 212 19 374 323 101 6 chr11 44608740 44608898 -106174655 - MIR SINE MIR -58 150 20 2075 164 90 10 chr11 44609697 44610099 -106173454 + Tigger2a DNA MER2_type 1 434 0 2356 203 31 71 chr11 44610115 44610752 -106172801 + LTR9 LTR ERV1 1 612 0 27 29 0 0 chr11 44611058 44611092 -106172461 + AT_rich Low_complexity Low_complexity 1 34 0 359 336 52 48 chr11 44611121 44611410 -106172143 - L2 LINE L2 -4 3309 3020 513 332 35 17 chr11 44611780 44612012 -106171541 + MLT2E LTR ERVL 346 581 -47 1870 156 41 3 chr11 44612017 44612332 -106171221 + L1P3 LINE L1 8 334 -6127 9453 173 4 30 chr11 44612459 44614307 -106169246 + L1P3 LINE L1 1267 3067 -3394 434 302 93 20 chr11 44615060 44615497 -106168056 + L1MEd LINE L1 1044 1508 -4621 227 194 30 30 chr11 44615581 44615648 -106167905 + MLT1J LTR MaLR 97 163 -348 521 328 28 35 chr11 44616176 44616384 -106167169 + L1MEc LINE L1 1194 1402 -4994 2434 90 0 0 chr11 44616384 44616695 -106166858 + AluY SINE Alu 1 311 0 521 328 28 35 chr11 44616695 44617087 -106166466 + L1MEc LINE L1 1402 1790 -4606 2808 113 88 4 chr11 44617210 44617677 -106165876 + LTR1 LTR ERV1 280 785 0 401 248 177 7 chr11 44617841 44617982 -106165571 - MLT1I LTR MaLR -155 254 90 282 302 9 0 chr11 44618167 44618273 -106165280 - MER103 DNA DNA 0 166 60 3052 208 15 5 chr11 44618725 44619388 -106164165 - L1MB4 LINE L1 -6 6174 5505 274 410 0 0 chr11 44619991 44620096 -106163457 + MIR SINE MIR 1 105 -157 214 170 0 64 chr11 44620110 44620157 -106163396 - L2 LINE L2 0 3272 3229 449 236 57 8 chr11 44620270 44620393 -106163160 + MIR SINE MIR 120 248 -14 327 281 5 0 chr11 44620395 44620493 -106163060 - MIR SINE MIR -74 134 34 312 111 0 0 chr11 44620526 44620580 -106162973 + (GA)n Simple_repeat Simple_repeat 1 54 0 302 232 0 42 chr11 44621156 44621251 -106162302 + L1MC4 LINE L1 6614 6704 -1338 214 207 17 0 chr11 44621251 44621309 -106162244 + (TA)n Simple_repeat Simple_repeat 2 60 0 766 328 78 38 chr11 44622359 44622891 -106160662 + L1MEc LINE L1 36 441 -5676 3213 159 20 6 chr11 44622891 44623433 -106160120 + MER41C LTR ERV1 5 554 0 766 328 78 38 chr11 44623433 44623786 -106159767 + L1MEc LINE L1 441 778 -5339 45 45 0 0 chr11 44623869 44623935 -106159618 + AT_rich Low_complexity Low_complexity 1 66 0 338 226 22 29 chr11 44623935 44624072 -106159481 + L1MEc LINE L1 1038 1173 -5223 230 351 14 0 chr11 44624121 44624195 -106159358 - MLT1K LTR MaLR -347 241 167 767 313 78 17 chr11 44624214 44624508 -106159045 - MLT1I LTR MaLR -2 407 96 1401 131 14 0 chr11 44624567 44624788 -106158765 + LTR1 LTR ERV1 29 252 -533 286 333 23 0 chr11 44624932 44625061 -106158492 - MER94 DNA DNA -2 132 1 2174 107 0 10 chr11 44625833 44626133 -106157420 + AluSq SINE Alu 17 313 0 200 222 167 0 chr11 44626790 44626844 -106156709 + MIR SINE MIR 200 262 0 355 323 112 36 chr11 44626887 44627110 -106156443 + MIR SINE MIR 11 250 -12 422 240 10 10 chr11 44627550 44627654 -106155899 + LTR16C LTR ERVL 386 489 -2 2185 222 55 71 chr11 44627840 44628501 -106155052 - MLT1E1 LTR MaLR -2 652 3 286 281 129 7 chr11 44628753 44628892 -106154661 + MIR SINE MIR 95 250 -12 518 303 88 34 chr11 44629466 44629704 -106153849 - MIR SINE MIR -5 257 7 237 328 69 23 chr11 44630842 44630973 -106152580 + MIR SINE MIR 59 195 -67 553 13 26 13 chr11 44631417 44631494 -106152059 - AluY SINE Alu -11 298 221 421 347 85 5 chr11 44632206 44632405 -106151148 + MIR SINE MIR 3 217 -45 279 311 99 51 chr11 44632688 44633042 -106150511 + MLT1I LTR MaLR 39 409 0 1734 275 28 16 chr11 44633368 44633873 -106149680 - LTR40a LTR ERVL 0 519 9 443 324 45 0 chr11 44634036 44634215 -106149338 - HERVL68 LTR ERVL -66 2971 2785 262 273 91 30 chr11 44634191 44634290 -106149263 - MER70-int LTR ERVL -349 4674 4570 * 2146 116 0 3 chr11 44635514 44635807 -106147746 - AluSg SINE Alu -18 292 1 2057 185 69 5 chr11 44636092 44636482 -106147071 - MSTA LTR MaLR 0 428 14 31 0 0 0 chr11 44636930 44636961 -106146592 + AT_rich Low_complexity Low_complexity 1 31 0 313 224 83 70 chr11 44637434 44637590 -106145963 + MIR SINE MIR 104 261 -1 236 328 0 0 chr11 44638069 44638136 -106145417 + (TATG)n Simple_repeat Simple_repeat 1 67 0 1300 204 71 96 chr11 44638742 44639251 -106144302 + LTR54B LTR ERV1 3 498 0 1493 212 80 9 chr11 44641669 44641994 -106141559 - MER7A DNA MER2_type 0 346 1 410 255 129 34 chr11 44643683 44643946 -106139607 - LTR43 LTR ERV1 -124 478 191 362 300 27 0 chr11 44644437 44644547 -106139006 + MER5A DNA MER1_type 1 113 -76 330 305 102 25 chr11 44644634 44644752 -106138801 - L2 LINE L2 -5 3267 3141 201 262 0 66 chr11 44645701 44645762 -106137791 + L2 LINE L2 3257 3313 0 300 313 30 69 chr11 44646009 44646140 -106137413 + L2 LINE L2 3182 3307 -6 419 338 28 0 chr11 44646143 44646288 -106137265 - LTR16C LTR ERVL -3 488 340 551 253 89 39 chr11 44646636 44646917 -106136636 - L1MDa LINE L1 -6194 346 52 632 280 47 14 chr11 44647790 44648004 -106135549 + MIR SINE MIR 39 259 -3 2012 152 27 38 chr11 44648365 44648733 -106134820 + THE1B LTR MaLR 1 364 0 11203 110 6 0 chr11 44648733 44650303 -106133250 + THE1B-int LTR MaLR 1 1580 0 1979 168 27 41 chr11 44650303 44650672 -106132881 + THE1B LTR MaLR 1 364 0 314 277 12 0 chr11 44650802 44650885 -106132668 + MIR3 SINE MIR 122 205 -3 377 244 62 56 chr11 44651174 44651334 -106132219 - MIR SINE MIR -55 207 47 308 278 111 0 chr11 44651678 44651786 -106131767 - MIR SINE MIR -43 219 100 367 317 22 97 chr11 44652555 44652782 -106130771 + L2 LINE L2 3040 3249 -23 1193 347 34 0 chr11 44652865 44653283 -106130270 + LTR16A LTR ERVL 17 448 -2 752 293 55 61 chr11 44653800 44654258 -106129295 - LTR16A1 LTR ERVL -2 455 1 1479 325 60 7 chr11 44654275 44655081 -106128472 - L2 LINE L2 -4 3309 2452 1788 129 0 0 chr11 44655204 44655482 -106128071 - L1PA13 LINE L1 -4 6159 5882 3229 296 134 27 chr11 44655896 44657520 -106126033 - L2 LINE L2 -867 2447 651 385 161 25 34 chr11 44657809 44657927 -106125626 + CT-rich Low_complexity Low_complexity 1 117 0 1768 207 29 0 chr11 44659006 44659383 -106124170 + MLT1B LTR MaLR 3 390 0 2049 122 35 0 chr11 44659723 44660009 -106123544 + AluSx SINE Alu 3 298 -14 305 375 0 0 chr11 44660147 44660259 -106123294 - L2 LINE L2 -12 3301 3190 180 0 0 0 chr11 44660307 44660327 -106123226 + (TTA)n Simple_repeat Simple_repeat 2 21 0 2186 123 3 0 chr11 44660341 44660650 -106122903 + AluSp SINE Alu 1 310 -3 390 246 57 8 chr11 44660679 44660801 -106122752 + L2 LINE L2 3182 3309 -4 369 295 74 50 chr11 44661042 44661300 -106122253 - L1ME4a LINE L1 -25 6096 5833 1834 183 0 3 chr11 44661306 44661618 -106121935 + AluSx SINE Alu 1 311 -1 1068 122 0 0 chr11 44661835 44661991 -106121562 - L1PA13 LINE L1 -14 6149 5994 2106 103 3 0 chr11 44661991 44662282 -106121271 + L1PA13 LINE L1 5683 5974 -194 354 172 152 20 chr11 44662301 44662400 -106121153 - L1MA7 LINE L1 -22 6269 6158 957 324 31 55 chr11 44662589 44662664 -106120889 - L2 LINE L2 0 3313 3238 207 88 0 0 chr11 44662664 44662698 -106120855 + (TTAA)n Simple_repeat Simple_repeat 2 35 0 957 324 31 55 chr11 44662698 44663134 -106120419 - L2 LINE L2 -75 3238 2814 506 322 25 34 chr11 44663151 44663387 -106120166 - L2 LINE L2 -1849 1465 1232 278 347 91 0 chr11 44663956 44664077 -106119476 + MER117 DNA MER1_type 11 142 -55 21 0 0 0 chr11 44664305 44664326 -106119227 + AT_rich Low_complexity Low_complexity 1 21 0 960 386 49 17 chr11 44664446 44665155 -106118398 - L2 LINE L2 -406 2908 2177 290 315 77 52 chr11 44665575 44665899 -106117654 + L2 LINE L2 1870 2201 -1113 29 60 0 0 chr11 44666716 44666766 -106116787 + AT_rich Low_complexity Low_complexity 1 50 0 200 171 65 16 chr11 44667996 44668119 -106115434 + (TA)n Simple_repeat Simple_repeat 2 130 0 404 140 58 18 chr11 44668136 44668307 -106115246 + (TA)n Simple_repeat Simple_repeat 2 179 0 345 183 44 50 chr11 44668375 44668555 -106114998 + (TA)n Simple_repeat Simple_repeat 1 179 0 202 261 0 0 chr11 44668685 44668731 -106114822 + (TGGA)n Simple_repeat Simple_repeat 1 46 0 459 335 72 48 chr11 44669696 44669989 -106113564 - MERVL LTR ERVL -693 5071 4772 397 319 112 24 chr11 44670301 44670750 -106112803 - MERVL LTR ERVL -1279 4206 3861 539 368 48 31 chr11 44671490 44671966 -106111587 - MERVL LTR ERVL -2641 3123 2640 23 33 0 0 chr11 44671998 44672028 -106111525 + AT_rich Low_complexity Low_complexity 1 30 0 356 291 103 36 chr11 44672238 44672517 -106111036 + LTR16B LTR ERVL 148 463 0 642 128 0 0 chr11 44672915 44673017 -106110536 - L1PA15 LINE L1 -2 6163 6062 1102 313 119 20 chr11 44673023 44673762 -106109791 - HAL1 LINE L1 -1593 914 103 2357 140 3 6 chr11 44674456 44674821 -106108732 + THE1B LTR MaLR 1 364 0 15129 105 4 12 chr11 44675291 44677601 -106105952 + L1PA7 LINE L1 2292 4583 -1563 6677 72 8 1 chr11 44677601 44678925 -106104628 + L1PA7 LINE L1 4809 6138 -16 273 89 0 0 chr11 44678927 44678972 -106104581 + (TA)n Simple_repeat Simple_repeat 1 45 0 850 263 17 13 chr11 44679437 44679669 -106103884 + L1M4 LINE L1 20 252 -6290 1951 197 13 26 chr11 44679674 44680060 -106103493 + MSTB LTR MaLR 46 426 0 6992 196 24 12 chr11 44680060 44681426 -106102127 + MSTB-int LTR MaLR 1 1383 -268 2146 134 0 3 chr11 44681608 44681900 -106101653 - AluSx SINE Alu -21 291 1 2298 162 10 31 chr11 44681900 44682307 -106101246 + MSTB LTR MaLR 29 426 0 492 212 26 0 chr11 44682310 44682423 -106101130 + L1M4 LINE L1 4439 4554 -1592 7752 20 0 0 chr11 44682473 44683555 -106099998 + L1P1 LINE L1 4481 5562 -593 6846 13 1 0 chr11 44683555 44684333 -106099220 + L1PA2 LINE L1 5373 6154 -1 191 81 54 0 chr11 44685355 44685392 -106098161 + A-rich Low_complexity Low_complexity 2 40 0 1519 172 0 0 chr11 44685686 44685930 -106097623 + AluJo SINE Alu 57 300 -12 1578 122 36 0 chr11 44685931 44686152 -106097401 + AluSg/x SINE Alu 66 294 -16 7436 196 18 6 chr11 44686154 44687749 -106095804 + L1 LINE L1 2778 4392 -1754 966 142 0 0 chr11 44687749 44687890 -106095663 + AluJb SINE Alu 160 300 -12 752 168 7 0 chr11 44687971 44688126 -106095427 + L1 LINE L1 4397 4552 -1594 315 329 34 27 chr11 44738127 44738273 -106045280 - MIR3 SINE MIR -52 156 10 1638 177 77 32 chr11 44738898 44739241 -106044312 + MLT2C1 LTR ERVL 3 366 -31 272 70 23 0 chr11 44739241 44739284 -106044269 + (CA)n Simple_repeat Simple_repeat 2 45 0 1638 177 77 32 chr11 44739284 44739318 -106044235 + MLT2C1 LTR ERVL 366 397 0 799 245 215 11 chr11 44739369 44739736 -106043817 - MLT1J2 LTR MaLR -8 442 1 26 74 0 0 chr11 44741853 44741907 -106041646 + AT_rich Low_complexity Low_complexity 1 54 0 2125 129 7 0 chr11 44742242 44742544 -106041009 + AluSx SINE Alu 1 304 -8 374 172 0 0 chr11 44743326 44743390 -106040163 - Alu SINE Alu 0 300 237 193 308 64 0 chr11 44743398 44743476 -106040077 + MIR SINE MIR 124 206 -56 3795 112 31 15 chr11 44743744 44743844 -106039709 - L1PA13 LINE L1 -1 6162 6065 2546 95 11 19 chr11 44743844 44744222 -106039331 - THE1C LTR MaLR 0 375 1 3795 112 31 15 chr11 44744222 44744726 -106038827 - L1PA13 LINE L1 -98 6065 5548 1357 133 20 5 chr11 44745561 44745764 -106037789 - AluSg/x SINE Alu -8 304 99 225 0 0 0 chr11 44746047 44746072 -106037481 + (TC)n Simple_repeat Simple_repeat 2 26 0 336 24 0 0 chr11 44746074 44746115 -106037438 + (CA)n Simple_repeat Simple_repeat 1 41 0 200 114 29 0 chr11 44746328 44746363 -106037190 + (TTG)n Simple_repeat Simple_repeat 1 36 0 941 217 22 60 chr11 44746367 44746634 -106036919 + MLT1A1 LTR MaLR 4 260 -105 407 102 17 0 chr11 44746768 44746827 -106036726 + MLT1A1 LTR MaLR 314 373 -1 212 241 0 35 chr11 44747025 44747083 -106036470 + (TCTA)n Simple_repeat Simple_repeat 2 57 0 4856 211 69 97 chr11 44747932 44749417 -106034136 + L1MC3 LINE L1 5476 6859 -926 5721 165 19 14 chr11 44749447 44751055 -106032498 - L1MA8 LINE L1 -5 7307 5690 2316 138 3 35 chr11 44751055 44751431 -106032122 + THE1B LTR MaLR 1 364 0 1312 103 5 0 chr11 44751431 44751616 -106031937 + THE1B-int LTR MaLR 1 186 -1394 1867 155 3 14 chr11 44751616 44751913 -106031640 + AluSq SINE Alu 1 294 -19 390 324 0 0 chr11 44752420 44752528 -106031025 + MIR SINE MIR 46 153 -109 1028 250 81 18 chr11 44752547 44752819 -106030734 - L1MC4a LINE L1 -917 6891 6603 2438 244 70 21 chr11 44752847 44752937 -106030616 + L1MC4a LINE L1 6942 7026 -782 186 43 0 0 chr11 44752937 44752960 -106030593 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 2438 244 70 21 chr11 44752960 44753744 -106029809 + L1MC4a LINE L1 7026 7808 0 185 62 0 31 chr11 44753858 44753890 -106029663 + (TTA)n Simple_repeat Simple_repeat 1 31 0 802 187 113 30 chr11 44754334 44754535 -106029018 + MLT1C LTR MaLR 1 218 -249 1791 87 31 8 chr11 44754535 44754789 -106028764 + MLT2A1 LTR ERVL 1 260 -184 18455 56 19 1 chr11 44754794 44757077 -106026476 + HERVL LTR ERVL 3317 5640 -14 1010 212 39 12 chr11 44757077 44757091 -106026462 + MLT1C LTR MaLR 200 212 -255 2868 87 36 25 chr11 44757091 44757530 -106026023 + MLT2A1 LTR ERVL 1 444 0 1010 212 39 12 chr11 44757530 44757774 -106025779 + MLT1C LTR MaLR 212 465 -2 1388 123 10 5 chr11 44758454 44758658 -106024895 + AluSx SINE Alu 36 240 -72 4105 102 3 3 chr11 44758758 44759324 -106024229 + THE1B-int LTR MaLR 233 798 -782 2664 84 0 0 chr11 44759323 44759668 -106023885 + THE1B-int LTR MaLR 1233 1577 -3 * 2244 144 3 35 chr11 44759671 44760047 -106023506 + THE1B LTR MaLR 1 364 0 215 245 0 0 chr11 44760100 44760153 -106023400 + T-rich Low_complexity Low_complexity 5 57 0 8138 237 72 24 chr11 44760199 44763235 -106020318 - L1MA8 LINE L1 -1709 5458 2475 1958 139 41 35 chr11 44763235 44763602 -106019951 + THE1C LTR MaLR 5 373 -2 8138 237 72 24 chr11 44763602 44764532 -106019021 - L1MA8 LINE L1 -4692 2475 1591 1532 205 50 40 chr11 44765445 44765704 -106017849 + L1MC3 LINE L1 6870 7136 -649 1608 215 3 3 chr11 44765704 44766006 -106017547 - AluJb SINE Alu -10 302 1 1532 205 50 40 chr11 44766006 44766170 -106017383 + L1MC3 LINE L1 7136 7297 -488 198 0 0 0 chr11 44766192 44766214 -106017339 + (TTTTA)n Simple_repeat Simple_repeat 4 25 0 5645 43 20 0 chr11 44766220 44766911 -106016642 - L1PA5 LINE L1 -2 6152 5448 23 0 0 0 chr11 44767014 44767037 -106016516 + AT_rich Low_complexity Low_complexity 1 23 0 191 36 36 0 chr11 44767193 44767221 -106016332 + (TAA)n Simple_repeat Simple_repeat 3 31 0 285 305 92 15 chr11 44767796 44767927 -106015626 + MIR SINE MIR 78 218 -44 240 314 57 48 chr11 44767907 44768012 -106015541 - MIR SINE MIR -156 106 1 * 198 267 139 50 chr11 44768172 44768273 -106015280 + L2 LINE L2 3201 3310 -3 813 93 0 47 chr11 44768495 44768624 -106014929 + L1PA8 LINE L1 6037 6159 -13 391 340 148 27 chr11 44768751 44769083 -106014470 + L2 LINE L2 2714 3091 -181 213 318 0 0 chr11 44769280 44769346 -106014207 + CT-rich Low_complexity Low_complexity 3 68 0 263 353 43 0 chr11 44769783 44769899 -106013654 - MIR3 SINE MIR -2 206 86 29 47 0 0 chr11 44770811 44770854 -106012699 + AT_rich Low_complexity Low_complexity 1 43 0 29 0 0 0 chr11 44770967 44770996 -106012557 + AT_rich Low_complexity Low_complexity 1 29 0 280 294 126 45 chr11 44771087 44771373 -106012180 + L1ME LINE L1 5350 5658 -463 3098 214 28 0 chr11 44771531 44772142 -106011411 + L1PA15 LINE L1 1 628 -6159 2654 215 28 14 chr11 44772122 44772685 -106010868 + L1PA15 LINE L1 1153 1723 -5064 * 13010 224 18 19 chr11 44772705 44775437 -106008116 + L1PA15 LINE L1 1839 4571 -2226 1271 203 45 31 chr11 44775437 44775723 -106007830 + AluJo SINE Alu 3 292 -20 13010 224 18 19 chr11 44775723 44775761 -106007792 + L1PA15 LINE L1 4571 4608 -2189 4453 119 41 46 chr11 44775761 44776544 -106007009 - MER4E LTR ERV1 0 779 1 13010 224 18 19 chr11 44776544 44776869 -106006684 + L1PA15 LINE L1 4608 4932 -1865 1976 122 25 69 chr11 44776869 44776998 -106006555 + THE1C LTR MaLR 1 134 -241 2050 156 0 6 chr11 44776998 44777313 -106006240 - AluSq SINE Alu 0 313 1 1976 122 25 69 chr11 44777313 44777575 -106005978 + THE1C LTR MaLR 134 375 0 13010 224 18 19 chr11 44777575 44777976 -106005577 + L1PA15 LINE L1 4932 5322 -1475 2047 160 45 27 chr11 44777976 44778511 -106005042 + MLT2A2 LTR ERVL 1 545 -9 5477 144 6 6 chr11 44778511 44780014 -106003539 + L1PA15 LINE L1 5309 6808 -8 195 325 123 26 chr11 44780368 44780522 -106003031 + MIR SINE MIR 79 247 -15 1167 287 60 57 chr11 44781913 44782566 -106000987 - L2 LINE L2 0 3313 2668 240 226 0 0 chr11 44783385 44783447 -106000106 + (ATG)n Simple_repeat Simple_repeat 2 63 0 706 211 14 14 chr11 44783757 44783904 -105999649 - MER5A DNA MER1_type -40 149 3 234 288 144 38 chr11 44785601 44785733 -105997820 - MIR SINE MIR -115 147 2 308 285 52 64 chr11 44785923 44786095 -105997458 - MIR SINE MIR -87 175 6 246 301 136 10 chr11 44787108 44787211 -105996342 + MIR SINE MIR 141 256 -6 24 0 0 0 chr11 44787408 44787432 -105996121 + AT_rich Low_complexity Low_complexity 1 24 0 307 316 6 63 chr11 44787574 44787732 -105995821 + MER5B DNA MER1_type 30 178 0 709 224 98 17 chr11 44788222 44788457 -105995096 - L1ME LINE L1 -515 5647 5372 1117 225 103 13 chr11 44788466 44788777 -105994776 + L1ME3 LINE L1 5615 5953 -209 516 274 0 0 chr11 44788860 44788984 -105994569 + MER45A DNA AcHobo 55 178 0 647 253 6 19 chr11 44788988 44789150 -105994403 + L1ME3 LINE L1 5996 6155 -7 669 323 36 5 chr11 44789298 44789521 -105994032 - MIR SINE MIR -1 261 32 196 277 34 118 chr11 44790924 44791043 -105992510 - MIR3 SINE MIR -5 203 95 297 287 15 7 chr11 44791502 44791638 -105991915 + (TA)n Simple_repeat Simple_repeat 1 137 0 396 365 51 19 chr11 44792400 44792614 -105990939 - MIR SINE MIR -30 232 12 1696 182 70 14 chr11 44793178 44793547 -105990006 - MLT1B LTR MaLR 0 390 1 306 368 41 15 chr11 44793831 44794097 -105989456 + MLT1K LTR MaLR 311 583 -5 230 302 0 16 chr11 44794248 44794311 -105989242 - L2 LINE L2 -1 3271 3210 501 263 52 33 chr11 44794311 44794524 -105989029 + MER106A DNA MER1_type 5 221 -15 279 273 94 75 chr11 44795022 44795289 -105988264 - MLT1L LTR MaLR -199 416 145 368 246 8 0 chr11 44795392 44795514 -105988039 + (TA)n Simple_repeat Simple_repeat 2 124 0 1768 197 139 17 chr11 44795890 44796356 -105987197 - MER63 DNA MER1_type -1 1060 538 3139 200 12 5 chr11 44796437 44797087 -105986466 + L1MD1 LINE L1 5588 6242 0 189 344 109 10 chr11 44797203 44797395 -105986158 + L2 LINE L2 2148 2358 -956 240 301 0 12 chr11 44797398 44797481 -105986072 + L1ME1 LINE L1 4873 4954 -1192 383 252 28 56 chr11 44797505 44798323 -105985230 + L1ME1 LINE L1 4942 5880 -286 1822 185 10 0 chr11 44798323 44798625 -105984928 + AluJo SINE Alu 1 305 -7 383 252 28 56 chr11 44798625 44798905 -105984648 + L1ME1 LINE L1 5880 6166 0 749 269 35 10 chr11 44800048 44800280 -105983273 + MLT1H LTR MaLR 28 244 -305 1154 207 46 25 chr11 44800310 44800633 -105982920 + L1MA3 LINE L1 5609 5938 -367 3664 71 2 2 chr11 44800368 44800845 -105982708 + L1PA6 LINE L1 5673 6149 -5 407 313 183 32 chr11 44801244 44801736 -105981817 + MLT1K LTR MaLR 5 570 -18 281 312 7 71 chr11 44802810 44802951 -105980602 - MIR SINE MIR -75 187 56 245 265 59 0 chr11 44802980 44803048 -105980505 - L2 LINE L2 0 3272 3201 1517 233 37 27 chr11 44804371 44804886 -105978667 - Charlie1b DNA MER1_type -3 520 1 238 333 85 54 chr11 44805010 44805400 -105978153 + L2 LINE L2 2912 3313 0 406 311 37 22 chr11 44805426 44805561 -105977992 + MIR SINE MIR 20 156 -106 548 337 98 34 chr11 44805564 44806042 -105977511 - L2 LINE L2 -1 3312 2804 238 346 0 19 chr11 44806052 44806156 -105977397 + MIR SINE MIR 159 260 -2 234 0 0 0 chr11 44806394 44806420 -105977133 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 40259 40 23 1 chr11 44806423 44812416 -105971137 - L1PA2 LINE L1 -25 6130 1 860 292 35 16 chr11 44813017 44813329 -105970224 - MLT1I LTR MaLR -29 380 63 312 336 65 70 chr11 44813439 44813560 -105969993 + MIR SINE MIR 28 149 -113 3964 152 27 4 chr11 44813560 44814253 -105969300 + L1PA16 LINE L1 5452 6160 -6 312 336 65 70 chr11 44814253 44814360 -105969193 + MIR SINE MIR 149 255 -7 203 358 133 28 chr11 44814363 44814715 -105968838 + L2 LINE L2 1789 2177 -1137 384 298 147 22 chr11 44814722 44814947 -105968606 + MIR SINE MIR 5 257 -5 443 340 19 12 chr11 44815203 44815459 -105968094 + MIR SINE MIR 1 258 -4 21 0 0 0 chr11 44817182 44817203 -105966350 + AT_rich Low_complexity Low_complexity 1 21 0 434 339 60 18 chr11 44817481 44817699 -105965854 + L1MC/D LINE L1 5510 5736 -2072 21 36 0 0 chr11 44817703 44817731 -105965822 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr11 44818317 44818339 -105965214 + AT_rich Low_complexity Low_complexity 1 22 0 236 301 168 0 chr11 44818630 44818743 -105964810 - L2 LINE L2 -1 3312 3181 1545 203 3 10 chr11 44818772 44819083 -105964470 + AluJo SINE Alu 1 309 -3 1138 234 45 48 chr11 44820725 44821123 -105962430 + MLT2C1 LTR ERVL 1 397 0 28 91 0 0 chr11 44821320 44821397 -105962156 + AT_rich Low_complexity Low_complexity 1 77 0 1284 157 9 0 chr11 44821577 44821794 -105961759 - AluJo SINE Alu -10 302 84 22 0 0 0 chr11 44823003 44823025 -105960528 + AT_rich Low_complexity Low_complexity 1 22 0 314 281 9 129 chr11 44823624 44823834 -105959719 + L2 LINE L2 3088 3272 0 190 237 0 0 chr11 44823910 44823948 -105959605 + MIR SINE MIR 157 194 -68 382 263 11 11 chr11 44825063 44825158 -105958395 - MIR3 SINE MIR -54 154 60 304 261 51 70 chr11 44825268 44825425 -105958128 + MIR SINE MIR 69 222 -40 373 318 97 13 chr11 44826800 44826954 -105956599 + MER5B DNA MER1_type 2 168 -10 189 107 0 0 chr11 44827139 44827167 -105956386 + (TTCA)n Simple_repeat Simple_repeat 3 30 0 348 293 91 24 chr11 44827299 44827507 -105956046 - L2 LINE L2 -167 3105 2884 2411 195 30 3 chr11 44827534 44828120 -105955433 - MER39 LTR ERV1 0 707 22 4106 212 48 85 chr11 44828587 44830156 -105953397 + L1M4 LINE L1 17 1527 -5015 210 236 0 0 chr11 44830159 44830214 -105953339 + (CA)n Simple_repeat Simple_repeat 2 56 0 427 223 10 19 chr11 44830214 44830317 -105953236 - Tigger7 DNA MER2_type 0 2487 2386 5838 62 1 15 chr11 44830318 44831137 -105952416 - L1PA4 LINE L1 -3 6152 5345 326 349 31 8 chr11 44831491 44831620 -105951933 + MIR SINE MIR 45 176 -86 437 326 126 33 chr11 44831701 44832121 -105951432 - L3 LINE CR1 -785 792 334 22 0 0 0 chr11 44832163 44832185 -105951368 + AT_rich Low_complexity Low_complexity 1 22 0 342 338 29 7 chr11 44833285 44833421 -105950132 - MIR SINE MIR -91 171 33 366 371 81 31 chr11 44833529 44833850 -105949703 + L2 LINE L2 2936 3272 0 243 146 0 0 chr11 44833911 44833952 -105949601 + (TA)n Simple_repeat Simple_repeat 1 41 0 228 163 0 0 chr11 44835763 44835806 -105947747 + (CA)n Simple_repeat Simple_repeat 2 44 0 235 250 83 9 chr11 44835810 44835918 -105947635 - L1ME4a LINE L1 -4 6117 6002 592 270 17 23 chr11 44835936 44836110 -105947443 - L2 LINE L2 0 3313 3141 1172 271 126 7 chr11 44836126 44836539 -105947014 + LTR33 LTR ERVL 48 509 -12 2318 113 0 0 chr11 44836586 44836915 -105946638 + THE1B LTR MaLR 34 362 -2 225 220 17 34 chr11 44836988 44837047 -105946506 - L2 LINE L2 -219 3053 2996 270 81 0 0 chr11 44837089 44837126 -105946427 + (GA)n Simple_repeat Simple_repeat 2 38 0 316 250 80 57 chr11 44837185 44837361 -105946192 - L1ME4a LINE L1 -230 5891 5712 191 299 182 0 chr11 44838698 44838775 -105944778 - MIR SINE MIR -108 154 64 538 338 62 44 chr11 44839283 44839558 -105943995 + L2 LINE L2 2993 3272 0 2270 123 0 3 chr11 44839576 44839878 -105943675 + AluSp SINE Alu 1 301 -12 1248 232 25 22 chr11 44840134 44840500 -105943053 - LTR52 LTR ERVL -25 396 30 810 275 54 80 chr11 44840509 44840898 -105942655 + MLT1E LTR MaLR 52 430 -163 238 318 152 0 chr11 44841149 44841281 -105942272 - MIR SINE MIR -55 207 56 1742 172 0 0 chr11 44841732 44841994 -105941559 + AluSx SINE Alu 1 262 -50 366 353 52 17 chr11 44842186 44842359 -105941194 - HAL1b LINE L1 -911 437 259 38979 69 3 1 chr11 44842369 44848499 -105935054 - L1PA5 LINE L1 -8 6146 5 281 312 7 71 chr11 44849066 44849207 -105934346 - MIR SINE MIR -75 187 56 245 265 59 0 chr11 44849236 44849304 -105934249 - L2 LINE L2 0 3272 3201 1517 233 37 27 chr11 44850627 44851142 -105932411 - Charlie1b DNA MER1_type -3 520 1 238 333 85 54 chr11 44851266 44851656 -105931897 + L2 LINE L2 2912 3313 0 406 311 37 22 chr11 44851682 44851817 -105931736 + MIR SINE MIR 20 156 -106 548 337 98 34 chr11 44851820 44852298 -105931255 - L2 LINE L2 -1 3312 2804 238 346 0 19 chr11 44852308 44852412 -105931141 + MIR SINE MIR 159 260 -2 234 0 0 0 chr11 44852650 44852676 -105930877 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 40244 39 23 1 chr11 44852677 44858671 -105924882 - L1PA2 LINE L1 -23 6132 1 860 292 35 16 chr11 44859272 44859584 -105923969 - MLT1I LTR MaLR -29 380 63 312 336 65 70 chr11 44859694 44859815 -105923738 + MIR SINE MIR 28 149 -113 3963 152 27 4 chr11 44859815 44860508 -105923045 + L1PA16 LINE L1 5452 6160 -6 312 336 65 70 chr11 44860508 44860615 -105922938 + MIR SINE MIR 149 255 -7 203 358 133 28 chr11 44860618 44860970 -105922583 + L2 LINE L2 1789 2177 -1137 384 298 147 22 chr11 44860977 44861202 -105922351 + MIR SINE MIR 5 257 -5 445 363 8 0 chr11 44861458 44861714 -105921839 + MIR SINE MIR 1 258 -4 21 0 0 0 chr11 44863437 44863458 -105920095 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr11 44863958 44863986 -105919567 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr11 44864572 44864594 -105918959 + AT_rich Low_complexity Low_complexity 1 22 0 236 301 168 0 chr11 44864885 44864998 -105918555 - L2 LINE L2 -1 3312 3181 1627 193 3 10 chr11 44865027 44865338 -105918215 + AluJo SINE Alu 1 309 -3 21 0 0 0 chr11 44865392 44865413 -105918140 + AT_rich Low_complexity Low_complexity 1 21 0 186 348 0 0 chr11 44865470 44865516 -105918037 + L2 LINE L2 3141 3186 -86 463 274 49 24 chr11 44865751 44866039 -105917514 + AluJo SINE Alu 14 308 -4 180 353 22 59 chr11 44866170 44866306 -105917247 + L2 LINE L2 3141 3271 -1 2784 16 0 0 chr11 44866635 44866944 -105916609 - AluYb8 SINE Alu -9 309 1 372 360 80 25 chr11 44867617 44867817 -105915736 + MIR SINE MIR 32 242 -20 1001 201 28 19 chr11 44867858 44868072 -105915481 + MER20 DNA MER1_type 1 216 -3 2346 98 0 0 chr11 44869242 44869538 -105914015 - AluSc SINE Alu -11 298 3 2257 89 7 3 chr11 44869783 44870074 -105913479 + AluY SINE Alu 2 293 -18 183 273 20 81 chr11 44870504 44870603 -105912950 - MIR SINE MIR -71 191 99 709 292 0 16 chr11 44870691 44870876 -105912677 + MIR SINE MIR 17 198 -64 375 270 0 11 chr11 44870938 44871027 -105912526 - MER2 DNA MER2_type -256 89 2 2260 107 0 0 chr11 44871097 44871386 -105912167 - AluY SINE Alu -22 289 1 196 143 71 0 chr11 44871459 44871501 -105912052 - MIR SINE MIR -98 164 120 1303 260 78 74 chr11 44871506 44871932 -105911621 - MLT1G LTR MaLR -4 586 161 3268 132 12 6 chr11 44871932 44872426 -105911127 - LOR1a LTR ERV1 0 497 1 1303 260 78 74 chr11 44872426 44872579 -105910974 - MLT1G LTR MaLR -429 161 10 1214 285 80 43 chr11 44873048 44873722 -105909831 + L2 LINE L2 2620 3313 0 1637 245 52 21 chr11 44874065 44874530 -105909023 + MLT1D LTR MaLR 1 479 -26 676 284 73 82 chr11 44876025 44876460 -105907093 - MLT1H1 LTR MaLR 0 555 124 2094 87 0 0 chr11 44876460 44876750 -105906803 - AluY SINE Alu 0 307 18 676 284 73 82 chr11 44876750 44876873 -105906680 - MLT1H1 LTR MaLR -431 124 1 27 0 0 0 chr11 44876896 44876923 -105906630 + AT_rich Low_complexity Low_complexity 1 27 0 2426 92 0 0 chr11 44877593 44877898 -105905655 + AluY SINE Alu 1 305 -6 267 225 12 12 chr11 44877924 44878004 -105905549 + L1M4 LINE L1 2460 2539 -3607 865 210 115 92 chr11 44878260 44878304 -105905249 + MSTD LTR MaLR 1 43 -353 2098 110 7 20 chr11 44878304 44878604 -105904949 - AluSx SINE Alu -14 298 3 865 210 115 92 chr11 44878604 44878916 -105904637 + MSTD LTR MaLR 43 396 0 6238 31 2 0 chr11 44880784 44881590 -105901963 - L1PA3 LINE L1 -2738 3408 2601 16099 40 0 1 chr11 44881590 44884336 -105899217 + L1PA3 LINE L1 3407 6155 0 24 32 0 0 chr11 44884527 44884558 -105898995 + AT_rich Low_complexity Low_complexity 1 31 0 2015 218 51 28 chr11 44884562 44885090 -105898463 - MER89 LTR ERV1 -11 548 9 22 0 0 0 chr11 44885245 44885267 -105898286 + AT_rich Low_complexity Low_complexity 1 22 0 970 217 44 0 chr11 44885807 44886010 -105897543 - MER20 DNA MER1_type -1 218 7 208 329 124 29 chr11 44886039 44886176 -105897377 + MER5A DNA MER1_type 39 188 -1 277 312 28 9 chr11 44886186 44886295 -105897258 + L3 LINE CR1 1208 1318 -259 286 361 46 15 chr11 44886345 44886475 -105897078 + L3 LINE CR1 1430 1563 -14 247 269 65 65 chr11 44886606 44886714 -105896839 - MER5B DNA MER1_type -4 174 67 291 326 72 23 chr11 44886715 44886873 -105896680 - MIR SINE MIR -68 140 19 404 332 82 20 chr11 44887510 44887754 -105895799 - MIR SINE MIR 0 262 4 308 333 87 13 chr11 44889148 44889298 -105894255 - MIR SINE MIR -70 192 32 373 346 70 16 chr11 44889426 44889611 -105893942 + MIR SINE MIR 13 207 -55 512 323 57 31 chr11 44889754 44889983 -105893570 + MIR SINE MIR 7 241 -21 773 322 88 41 chr11 44890355 44890774 -105892779 - L2 LINE L2 -32 3281 2843 328 367 23 8 chr11 44890800 44890928 -105892625 + L2 LINE L2 3121 3250 -22 414 312 67 67 chr11 44891205 44891459 -105892094 + MLT1H LTR MaLR 12 268 -281 2186 125 3 3 chr11 44891459 44891770 -105891783 + AluSx SINE Alu 1 311 -1 414 312 67 67 chr11 44891770 44891903 -105891650 + MLT1H LTR MaLR 267 399 -150 240 369 19 0 chr11 44892893 44892996 -105890557 - MER81 DNA DNA -5 109 5 427 312 158 4 chr11 44893237 44893484 -105890069 - L2 LINE L2 0 3313 3029 332 154 0 77 chr11 44893484 44893562 -105889991 + MER77 LTR ERV1 368 439 -166 343 173 53 0 chr11 44893725 44893800 -105889753 + MER77 LTR ERV1 527 605 0 265 231 11 22 chr11 44893800 44893891 -105889662 + L1MEc LINE L1 1693 1782 -4614 * 500 283 108 9 chr11 44893887 44894099 -105889454 + L1ME3A LINE L1 5880 6112 -58 342 311 21 2 chr11 44894301 44894443 -105889110 + MIR SINE MIR 51 193 -63 21 0 0 0 chr11 44894773 44894794 -105888759 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr11 44895194 44895225 -105888328 + AT_rich Low_complexity Low_complexity 1 31 0 442 278 43 31 chr11 44895342 44895504 -105888049 - MIR3 SINE MIR -9 199 36 599 313 12 29 chr11 44895547 44895793 -105887760 + MIR SINE MIR 19 260 -2 192 40 0 0 chr11 44896149 44896174 -105887379 + (TG)n Simple_repeat Simple_repeat 2 26 0 258 319 85 0 chr11 44896282 44896376 -105887177 + MIR SINE MIR 45 146 -62 392 82 16 0 chr11 44896550 44896611 -105886942 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 704 191 8 0 chr11 44896611 44896737 -105886816 - FRAM SINE Alu -29 147 21 26 0 0 0 chr11 44896946 44896972 -105886581 + AT_rich Low_complexity Low_complexity 1 26 0 208 367 125 0 chr11 44897209 44897329 -105886224 - L2 LINE L2 -15 3257 3123 215 100 0 25 chr11 44897650 44897690 -105885863 + (TA)n Simple_repeat Simple_repeat 2 40 0 36 53 0 0 chr11 44897741 44897798 -105885755 + AT_rich Low_complexity Low_complexity 1 57 0 223 200 40 13 chr11 44897802 44897877 -105885676 + (TA)n Simple_repeat Simple_repeat 1 77 0 661 308 84 47 chr11 44898197 44898336 -105885217 + L2 LINE L2 2895 3027 -286 2281 84 3 32 chr11 44898336 44898644 -105884909 + AluY SINE Alu 1 299 -12 661 308 84 47 chr11 44898644 44898907 -105884646 + L2 LINE L2 3027 3312 -1 207 0 0 0 chr11 44898915 44898938 -105884615 + (T)n Simple_repeat Simple_repeat 1 23 0 2330 104 0 0 chr11 44900073 44900370 -105883183 - AluSx SINE Alu -9 303 7 333 315 49 14 chr11 44900863 44901006 -105882547 + MIR SINE MIR 49 196 -66 671 300 37 50 chr11 44901259 44901696 -105881857 + MLT1K LTR MaLR 145 575 -13 253 333 12 0 chr11 44901696 44901780 -105881773 + MIR SINE MIR 85 169 -93 2030 107 7 0 chr11 44902089 44902359 -105881194 + AluSq SINE Alu 1 272 -41 2362 143 3 6 chr11 44903102 44903467 -105880086 + THE1B LTR MaLR 1 364 0 9643 120 18 60 chr11 44903467 44905114 -105878439 + THE1B-int LTR MaLR 1 1578 -2 2608 115 3 3 chr11 44905116 44905480 -105878073 + THE1B LTR MaLR 1 364 0 2247 109 0 3 chr11 44905890 44906193 -105877360 - AluY SINE Alu -9 302 1 416 174 157 8 chr11 44906244 44906365 -105877188 + L1MC2 LINE L1 6206 6344 0 2085 79 14 0 chr11 44907561 44907852 -105875701 - L1PA7 LINE L1 -1692 4454 4160 6763 57 12 2 chr11 44907852 44909537 -105874016 + L1PA7 LINE L1 4462 6154 0 2116 128 0 0 chr11 44909723 44910019 -105873534 - AluSx SINE Alu -16 296 1 2738 82 0 0 chr11 44911581 44911936 -105871617 + THE1A LTR MaLR 1 355 0 1864 145 30 30 chr11 44912130 44912468 -105871085 - MER44D DNA MER2_type -1 608 1 312 311 19 10 chr11 44914378 44914481 -105869072 - LTR16B LTR ERVL -344 120 17 2243 91 7 13 chr11 44915430 44915738 -105867815 + AluSx SINE Alu 1 306 -6 2195 99 20 0 chr11 44916583 44916875 -105866678 - AluSp SINE Alu -13 300 3 24 53 0 0 chr11 44917118 44917156 -105866397 + AT_rich Low_complexity Low_complexity 1 38 0 195 293 17 0 chr11 44917216 44917274 -105866279 - MIR SINE MIR -65 197 139 186 222 22 0 chr11 44918692 44918737 -105864816 - MIR SINE MIR -56 206 161 2241 110 7 0 chr11 44918950 44919258 -105864295 - AluSp SINE Alu -3 310 1 52 69 0 0 chr11 44919359 44919460 -105864093 + AT_rich Low_complexity Low_complexity 1 101 0 236 186 26 53 chr11 44919526 44919639 -105863914 + (TTATA)n Simple_repeat Simple_repeat 4 113 0 67 89 0 0 chr11 44919669 44919848 -105863705 + AT_rich Low_complexity Low_complexity 1 179 0 38 75 0 0 chr11 44920128 44920208 -105863345 + AT_rich Low_complexity Low_complexity 1 80 0 2300 112 0 6 chr11 44920649 44920961 -105862592 + AluSq SINE Alu 1 310 -3 6884 55 0 3 chr11 44920988 44921859 -105861694 + L1PA5 LINE L1 5282 6149 -5 341 362 40 7 chr11 44922482 44922631 -105860922 + MIR SINE MIR 23 176 -86 205 391 55 0 chr11 44922691 44922801 -105860752 + MIR SINE MIR 35 150 -112 273 290 0 0 chr11 44923717 44923779 -105859774 - L2 LINE L2 -2 3311 3250 746 331 76 39 chr11 44924011 44924802 -105858751 + L2 LINE L2 2485 3312 -1 1372 257 25 20 chr11 44924866 44925259 -105858294 - LTR52 LTR ERVL -26 395 1 2082 130 3 0 chr11 44925308 44925608 -105857945 - AluSc SINE Alu -8 301 1 281 336 103 14 chr11 44925608 44925754 -105857799 - L2 LINE L2 -567 2747 2589 2135 142 18 34 chr11 44927306 44927686 -105855867 - THE1C LTR MaLR -1 374 1 893 113 14 0 chr11 44927686 44927827 -105855726 - THE1C-int LTR MaLR 0 1580 1438 9214 129 52 20 chr11 44927827 44929322 -105854231 - THE1C-int LTR MaLR -38 1542 1 2021 164 16 24 chr11 44929322 44929700 -105853853 - THE1C LTR MaLR 0 375 1 465 322 91 13 chr11 44929806 44930337 -105853216 + L1ME4a LINE L1 5347 5915 -206 632 306 97 85 chr11 44931987 44932470 -105851083 - L2 LINE L2 -4 3309 2821 707 231 64 11 chr11 44932531 44932795 -105850758 - L1M4 LINE L1 -1485 4661 4384 1539 114 5 0 chr11 44932805 44933015 -105850538 - AluSq SINE Alu -102 211 1 267 191 0 0 chr11 44933015 44933078 -105850475 - L1M4 LINE L1 -3259 2887 2825 2182 170 28 28 chr11 44933081 44933510 -105850043 + Tigger2a DNA MER2_type 6 434 0 477 234 130 0 chr11 44933513 44933695 -105849858 - L1M4 LINE L1 -3324 2822 2614 14633 224 19 12 chr11 44933706 44936909 -105846644 - L1PA15 LINE L1 -8 6860 3605 2237 114 3 0 chr11 44936909 44937216 -105846337 + AluSc SINE Alu 1 308 -1 14633 224 19 12 chr11 44937216 44939038 -105844515 - L1PA15 LINE L1 -3263 3605 1798 1251 107 6 0 chr11 44939059 44939227 -105844326 + AluY SINE Alu 1 169 -142 35375 68 3 7 chr11 44939287 44944029 -105839524 + L1P LINE L1 2 4723 -1423 700 35 0 0 chr11 44944287 44944372 -105839181 + L1MA1 LINE L1 5881 5965 -337 516 239 9 104 chr11 44945124 44945346 -105838207 + LTR16A1 LTR ERVL 187 387 -70 187 312 198 32 chr11 44945434 44945591 -105837962 - MIR SINE MIR -65 197 15 1684 59 0 0 chr11 44945741 44945943 -105837610 - AluY SINE Alu -10 301 100 302 353 68 0 chr11 44946112 44946245 -105837308 + MIR SINE MIR 49 190 -72 22 0 0 0 chr11 44946643 44946665 -105836888 + AT_rich Low_complexity Low_complexity 1 22 0 240 86 0 0 chr11 44946689 44946724 -105836829 + (TG)n Simple_repeat Simple_repeat 2 36 0 22 0 0 0 chr11 44947007 44947029 -105836524 + AT_rich Low_complexity Low_complexity 1 22 0 363 253 0 0 chr11 44947302 44947385 -105836168 - MER58A DNA MER1_type 0 112 30 194 301 96 0 chr11 44948400 44948473 -105835080 + MIR SINE MIR 28 107 -155 687 266 160 80 chr11 44948473 44948872 -105834681 + MLT1J2 LTR MaLR 1 431 -15 258 306 28 28 chr11 44948956 44949064 -105834489 - MIR SINE MIR -60 202 95 267 258 136 61 chr11 44949091 44949223 -105834330 + MIR SINE MIR 121 262 0 22 70 0 0 chr11 44949777 44949820 -105833733 + AT_rich Low_complexity Low_complexity 1 43 0 211 326 23 62 chr11 44950452 44950581 -105832972 + L2 LINE L2 2934 3057 -215 182 375 0 0 chr11 44950734 44950806 -105832747 + L2 LINE L2 2905 2976 -296 438 287 27 22 chr11 44951017 44951240 -105832313 - L1M4 LINE L1 -2123 4023 3800 227 213 0 16 chr11 44951526 44951587 -105831966 + (CATATA)n Simple_repeat Simple_repeat 3 62 0 437 129 0 24 chr11 44951591 44951676 -105831877 + (GGAA)n Simple_repeat Simple_repeat 2 84 0 716 123 0 0 chr11 44951912 44952026 -105831527 + AluY SINE Alu 195 308 -3 196 389 120 0 chr11 44952600 44952708 -105830845 - L2 LINE L2 0 3313 3193 * 306 248 75 105 chr11 44952706 44952839 -105830714 - L2 LINE L2 -1 3271 3143 192 429 83 0 chr11 44952898 44953031 -105830522 - L2 LINE L2 -18 3254 3111 309 333 62 16 chr11 44953560 44953689 -105829864 + L2 LINE L2 3176 3310 -3 378 279 30 55 chr11 44953831 44954032 -105829521 + MIR SINE MIR 55 250 -12 302 322 59 13 chr11 44955695 44955847 -105827706 - MIR SINE MIR -43 219 61 286 335 40 20 chr11 44956194 44956346 -105827207 + MIR SINE MIR 15 169 -93 975 127 0 4 chr11 45056365 45057084 -105726469 + HSATII Satellite Satellite 1 716 0 1107 106 0 23 chr11 45057117 45057505 -105726048 + HSATII Satellite Satellite 1 379 0 928 137 9 18 chr11 45057531 45057863 -105725690 + HSATII Satellite Satellite 1 329 -14 1047 90 1 47 chr11 45057899 45058668 -105724885 + HSATII Satellite Satellite 1 733 -1 596 163 0 7 chr11 45058643 45058778 -105724775 + (CATTC)n Satellite Satellite 2 135 0 * 525 105 0 0 chr11 45058840 45058926 -105724627 + (CATTC)n Satellite Satellite 5 90 0 1019 112 16 12 chr11 45059263 45060777 -105722776 - HSATII Satellite Satellite 0 1520 1 887 125 6 0 chr11 45060794 45060962 -105722591 - HSATII Satellite Satellite -1 169 1 1058 123 2 14 chr11 45060974 45062808 -105720745 - HSATII Satellite Satellite -72 1811 1 984 129 0 0 chr11 45062824 45062994 -105720559 - HSATII Satellite Satellite 0 170 1 870 137 0 0 chr11 45063020 45063224 -105720329 - HSATII Satellite Satellite 0 204 1 1074 124 3 14 chr11 45063246 45065102 -105718451 - HSATII Satellite Satellite -121 1835 1 953 99 0 14 chr11 45065132 45065349 -105718204 - HSATII Satellite Satellite -2 213 1 1191 164 6 2 chr11 45065463 45072054 -105711499 - ALR/Alpha Satellite centromeric -1 6615 1 1123 161 3 2 chr11 45072066 45074765 -105708788 - ALR/Alpha Satellite centromeric 0 2700 1 16142 39 1 2 chr11 45174769 45176855 -105606698 - L1P LINE L1 -1818 4328 2246 312 292 33 23 chr11 45178093 45178238 -105605315 + MIR SINE MIR 45 191 -71 309 253 32 10 chr11 45178763 45178880 -105604673 + MLT1I LTR MaLR 29 145 -264 252 248 2 103 chr11 45179014 45179131 -105604422 + MLT1G1 LTR MaLR 453 549 0 605 256 43 53 chr11 45179383 45179590 -105603963 + MER89 LTR ERV1 122 326 -233 226 0 29 29 chr11 45179790 45179825 -105603728 + (TAA)n Simple_repeat Simple_repeat 2 36 0 7541 135 9 6 chr11 45179825 45181083 -105602470 - HSMAR2 DNA Mariner -39 1263 1 191 306 32 0 chr11 45181085 45181147 -105602406 - L2 LINE L2 -1523 1791 1728 566 285 64 69 chr11 45181161 45181768 -105601785 - L1M4 LINE L1 -2000 4146 3543 21 57 0 0 chr11 45181913 45181948 -105601605 + AT_rich Low_complexity Low_complexity 1 35 0 599 164 6 124 chr11 45181991 45182168 -105601385 - MER50 LTR ERV1 -130 604 449 * 1259 112 27 31 chr11 45182157 45182380 -105601173 - MER50 LTR ERV1 -512 222 1 2182 132 16 8 chr11 45182380 45182750 -105600803 - MER50-int LTR ERV1 -8 7197 6825 715 99 10 0 chr11 45182749 45182871 -105600682 - MER50-int LTR ERV1 -1018 6187 3912 * 345 275 95 82 chr11 45182878 45183194 -105600359 - L1M4 LINE L1 -2947 3199 2880 629 231 21 0 chr11 45183604 45183747 -105599806 - MIR SINE MIR 0 262 117 1021 239 64 21 chr11 45183788 45184118 -105599435 + MER2 DNA MER2_type 1 344 0 244 256 39 39 chr11 45184202 45184280 -105599273 - MIR SINE MIR -32 230 153 608 171 154 0 chr11 45184280 45184397 -105599156 - FLAM_C SINE Alu -8 135 1 2039 72 0 0 chr11 45184408 45184657 -105598896 - AluY SINE Alu -19 292 44 380 288 14 41 chr11 45184673 45184819 -105598734 - MIR SINE MIR -119 143 2 27417 45 2 2 chr11 45185688 45190036 -105593517 - L1PA4 LINE L1 -26 6129 1782 2031 94 55 7 chr11 45190221 45190528 -105593025 + AluSx SINE Alu 1 312 0 207 265 0 0 chr11 45190761 45190810 -105592743 + (ATG)n Simple_repeat Simple_repeat 2 50 0 608 252 175 15 chr11 45190825 45191031 -105592522 - MIR SINE MIR 0 262 24 666 152 0 9 chr11 45191031 45191162 -105592391 - AluJb SINE Alu 0 312 181 680 19 58 10 chr11 45191162 45191266 -105592287 + (TTTC)n Simple_repeat Simple_repeat 1 109 0 657 168 11 34 chr11 45191274 45191453 -105592100 + CT-rich Low_complexity Low_complexity 4 178 0 346 25 0 0 chr11 45191453 45191493 -105592060 + (TC)n Simple_repeat Simple_repeat 2 41 0 2080 116 0 0 chr11 45191494 45191762 -105591791 - AluSc SINE Alu -38 271 4 251 273 0 0 chr11 45191765 45191820 -105591733 - AluJ/monomer SINE Alu -245 55 1 245 267 53 0 chr11 45192274 45192349 -105591204 - L1MC4a LINE L1 -1883 5925 5847 201 39 0 0 chr11 45192363 45192389 -105591164 + (TTA)n Simple_repeat Simple_repeat 1 26 0 2167 97 0 31 chr11 45192389 45192539 -105591014 - AluSq SINE Alu -32 281 142 2180 87 0 7 chr11 45192539 45192849 -105590704 - AluY SINE Alu 0 308 1 2167 97 0 31 chr11 45192849 45192987 -105590566 - AluSq SINE Alu -171 142 1 293 83 67 17 chr11 45193083 45193143 -105590410 + L1ME4a LINE L1 6028 6090 -31 250 265 10 71 chr11 45193190 45193288 -105590265 - MIR3 SINE MIR -32 176 85 1346 186 40 78 chr11 45193452 45193559 -105589994 + MLT1A1 LTR MaLR 1 111 -254 2117 103 38 0 chr11 45193559 45193851 -105589702 - AluSp SINE Alu -10 303 1 1346 186 40 78 chr11 45193851 45194114 -105589439 + MLT1A1 LTR MaLR 111 357 -8 290 248 212 44 chr11 45194200 45194337 -105589216 - L2 LINE L2 -1 3312 3153 1669 158 50 0 chr11 45194524 45194802 -105588751 - AluJo SINE Alu -19 293 2 1420 152 4 33 chr11 45195274 45195517 -105588036 - AluSg/x SINE Alu -9 303 68 2164 124 0 3 chr11 45195569 45195868 -105587685 - AluSx SINE Alu -14 298 1 246 345 36 0 chr11 45196246 45196330 -105587223 - MIR SINE MIR -168 94 8 506 161 21 0 chr11 45196449 45196542 -105587011 + MIR SINE MIR 151 245 -17 660 245 53 42 chr11 45196679 45196944 -105586609 - MLT1C LTR MaLR 0 467 200 192 143 0 0 chr11 45197177 45197219 -105586334 + (GA)n Simple_repeat Simple_repeat 1 42 0 584 250 89 12 chr11 45197273 45197441 -105586112 + MIR SINE MIR 75 255 -7 2305 54 41 7 chr11 45197491 45197786 -105585767 - AluY SINE Alu -6 305 1 1320 177 137 30 chr11 45197841 45198112 -105585441 + AluJb SINE Alu 1 300 -2 27 0 0 26 chr11 45198140 45198158 -105585395 + AT_rich Low_complexity Low_complexity 1 18 -19 2009 147 0 0 chr11 45198158 45198443 -105585110 - AluSx SINE Alu -27 285 1 27 0 0 26 chr11 45198443 45198462 -105585091 + AT_rich Low_complexity Low_complexity 18 37 0 2514 119 2 8 chr11 45198462 45198857 -105584696 - L1MA2 LINE L1 0 6304 5912 340 326 86 39 chr11 45199500 45199733 -105583820 - MIR SINE MIR 0 262 19 2191 121 0 3 chr11 45199735 45200041 -105583512 - AluSx SINE Alu -7 305 1 1825 168 0 13 chr11 45200041 45200350 -105583203 - AluJo SINE Alu -7 305 1 2200 108 3 0 chr11 45200627 45200924 -105582629 + AluSx SINE Alu 1 298 -14 310 244 38 30 chr11 45200962 45201093 -105582460 - L1ME4a LINE L1 -11 6110 5979 316 148 0 0 chr11 45201118 45201172 -105582381 - Alu SINE Alu -1 301 248 25 83 0 0 chr11 45201181 45201241 -105582312 + AT_rich Low_complexity Low_complexity 1 60 0 13544 177 23 15 chr11 45201372 45203423 -105580130 - L1MA4A LINE L1 -29 6976 4943 2259 109 0 0 chr11 45203423 45203716 -105579837 - AluY SINE Alu -18 293 1 13544 177 23 15 chr11 45203716 45205724 -105577829 - L1MA4A LINE L1 -2062 4943 2883 787 222 27 0 chr11 45205722 45205907 -105577646 - L1MA4A LINE L1 -6650 199 10 * 716 262 44 11 chr11 45205919 45206190 -105577363 - L1ME4a LINE L1 -294 5827 5548 21 0 0 0 chr11 45206222 45206243 -105577310 + AT_rich Low_complexity Low_complexity 1 21 0 2080 182 203 27 chr11 45206708 45207377 -105576176 + LTR48 LTR ERV1 1 787 0 227 171 57 138 chr11 45207389 45207442 -105576111 + MLT1L LTR MaLR 497 553 -62 2278 113 0 0 chr11 45207442 45207744 -105575809 - AluSq SINE Alu -11 302 1 227 171 57 138 chr11 45207744 45207813 -105575740 + MLT1L LTR MaLR 553 609 -6 21 36 0 0 chr11 45207968 45207996 -105575557 + AT_rich Low_complexity Low_complexity 1 28 0 627 256 12 12 chr11 45208150 45208322 -105575231 + MIR SINE MIR 91 262 0 1218 180 138 132 chr11 45208339 45208968 -105574585 - LTR27 LTR ERV1 -1 635 3 205 190 52 17 chr11 45209154 45209212 -105574341 + (CAAA)n Simple_repeat Simple_repeat 4 63 0 772 261 87 42 chr11 45209487 45209866 -105573687 - MLT1I LTR MaLR -7 402 7 204 234 0 0 chr11 45210337 45210384 -105573169 + L2 LINE L2 3266 3312 -1 318 211 173 0 chr11 45210722 45210826 -105572727 + MLT1H LTR MaLR 373 494 -55 769 205 124 81 chr11 45210832 45210900 -105572653 - MER58A DNA MER1_type -2198 222 158 3167 193 60 42 chr11 45210900 45211710 -105571843 - LTR1B LTR ERV1 0 826 2 769 205 124 81 chr11 45211710 45211851 -105571702 - MER58A DNA MER1_type -2262 158 4 267 182 18 0 chr11 45211851 45211906 -105571647 + MLT1H LTR MaLR 533 588 -2 610 310 25 8 chr11 45212490 45212735 -105570818 + MIR SINE MIR 12 260 -2 921 284 78 12 chr11 45213078 45213413 -105570140 - LTR16A LTR ERVL -14 436 80 1616 166 12 127 chr11 45213673 45214028 -105569525 - MER93b LTR ERV1 -5 368 66 1714 46 0 0 chr11 45214028 45214225 -105569328 + AluY SINE Alu 99 295 -16 1616 166 12 127 chr11 45214225 45214285 -105569268 - MER93b LTR ERV1 -307 66 1 348 280 20 10 chr11 45214391 45214491 -105569062 - MIR SINE MIR -63 145 45 539 249 127 47 chr11 45215007 45215220 -105568333 - MIR SINE MIR -2 260 31 209 335 37 67 chr11 45215527 45215691 -105567862 + MIR SINE MIR 23 181 -81 903 199 25 15 chr11 45215917 45216118 -105567435 + MER3 DNA MER1_type 3 205 -4 326 259 12 0 chr11 45216137 45216218 -105567335 + L2 LINE L2 3232 3313 0 21 0 0 0 chr11 45216873 45216894 -105566659 + AT_rich Low_complexity Low_complexity 1 21 0 2099 133 0 13 chr11 45216944 45217244 -105566309 - AluSx SINE Alu -16 296 1 565 246 85 89 chr11 45217295 45217519 -105566034 - MIR SINE MIR -9 253 31 679 290 23 28 chr11 45217530 45217744 -105565809 - MIR SINE MIR -34 228 16 1763 220 70 11 chr11 45217755 45218196 -105565357 + MLT1C LTR MaLR 1 467 0 2105 136 0 22 chr11 45218234 45218551 -105565002 - AluSq SINE Alu -3 310 1 499 279 69 10 chr11 45218797 45219001 -105564552 + MIR SINE MIR 47 262 0 381 270 11 0 chr11 45219601 45219690 -105563863 + MER5A DNA MER1_type 16 105 -84 2062 152 0 0 chr11 45219928 45220225 -105563328 - AluSx SINE Alu -15 297 1 507 314 33 41 chr11 45220399 45220644 -105562909 - MIR SINE MIR -8 254 12 1264 236 17 14 chr11 45220812 45221108 -105562445 - MLT1C LTR MaLR 0 467 171 282 64 0 106 chr11 45221146 45221193 -105562360 + MLT1C LTR MaLR 101 142 -325 2110 90 75 12 chr11 45221247 45221568 -105561985 + L1PB2 LINE L1 5808 6148 -3 442 242 0 0 chr11 45222025 45222116 -105561437 - Tigger5 DNA MER2_type -3 2320 2230 361 284 0 0 chr11 45222120 45222208 -105561345 + Tigger5 DNA MER2_type 1 88 -2235 288 206 15 15 chr11 45222230 45222298 -105561255 - Tigger5 DNA MER2_type -5 2318 2251 285 236 0 0 chr11 45222267 45222322 -105561231 - Tigger5 DNA MER2_type -2268 55 1 * 8844 57 3 4 chr11 45222754 45223826 -105559727 + MER11C LTR ERVK 1 1071 0 814 148 44 50 chr11 45224155 45224337 -105559216 - MLT1C LTR MaLR -286 181 1 540 127 0 13 chr11 45224342 45224421 -105559132 - AluJ/FLAM SINE Alu -228 84 7 465 277 179 16 chr11 45224449 45224633 -105558920 + MIR SINE MIR 8 221 -41 230 262 189 16 chr11 45224634 45224756 -105558797 + LTR16A1 LTR ERVL 1 143 -314 548 214 172 0 chr11 45224796 45224941 -105558612 + LTR16A1 LTR ERVL 288 457 0 829 113 0 15 chr11 45224972 45225135 -105558418 + FLAM_C SINE Alu 1 161 0 2753 93 5 8 chr11 45225184 45225560 -105557993 - THE1C LTR MaLR 0 375 1 320 0 0 24 chr11 45225998 45226039 -105557514 + (CAT)n Simple_repeat Simple_repeat 3 42 0 222 261 152 11 chr11 45226151 45226243 -105557310 - MIR SINE MIR -119 143 39 411 73 0 0 chr11 45227514 45227569 -105555984 + (TA)n Simple_repeat Simple_repeat 2 56 0 1520 162 88 0 chr11 45227569 45227713 -105555840 - AluJo SINE Alu -9 303 173 525 58 0 0 chr11 45227713 45227782 -105555771 + (TTCC)n Simple_repeat Simple_repeat 3 71 0 1520 162 88 0 chr11 45227782 45227912 -105555641 - AluJo SINE Alu -139 173 1 2274 107 0 22 chr11 45230339 45230657 -105552896 - AluSq SINE Alu -2 311 1 283 222 153 0 chr11 45230707 45230779 -105552774 - MLT1K LTR MaLR -1 587 505 606 295 19 14 chr11 45231086 45231293 -105552260 - MIR SINE MIR -54 208 1 1634 189 7 14 chr11 45231512 45231809 -105551744 - AluJb SINE Alu -15 297 3 450 193 67 25 chr11 45231842 45231961 -105551592 - MIR SINE MIR -93 169 46 1092 86 23 6 chr11 45232672 45232846 -105550707 + (TTTC)n Simple_repeat Simple_repeat 2 178 0 294 179 0 0 chr11 45232850 45232906 -105550647 + CT-rich Low_complexity Low_complexity 3 58 0 2016 142 3 7 chr11 45232928 45233223 -105550330 - AluSx SINE Alu -18 294 1 204 40 0 0 chr11 45236527 45236552 -105547001 + (TG)n Simple_repeat Simple_repeat 2 26 0 2548 60 0 0 chr11 45236610 45236911 -105546642 + AluY SINE Alu 1 301 -10 229 270 48 0 chr11 45236987 45237050 -105546503 - L1ME LINE L1 -369 5801 5736 434 333 6 19 chr11 45237145 45237304 -105546249 - MIR3 SINE MIR -16 192 36 326 342 20 64 chr11 45237414 45237616 -105545937 + MER91A DNA MER1_type 3 195 -1 1749 152 0 37 chr11 45238186 45238482 -105545071 - AluJo SINE Alu -16 296 12 2179 165 11 11 chr11 45238710 45239085 -105544468 - L1MC1 LINE L1 -23 6310 5936 1290 86 5 41 chr11 45239062 45239259 -105544294 - L1PA8A LINE L1 0 6131 5942 * 392 161 43 0 chr11 45239278 45239371 -105544182 - L1MB3 LINE L1 0 6183 6087 4631 139 10 19 chr11 45239374 45239915 -105543638 - L1MA4 LINE L1 -278 6022 5492 1976 145 0 17 chr11 45239915 45240211 -105543342 - AluSx SINE Alu -21 291 1 4631 139 10 19 chr11 45240211 45240586 -105542967 - L1MA4 LINE L1 -808 5492 5115 1867 152 61 0 chr11 45240582 45240911 -105542642 - L1MC1 LINE L1 -353 5980 5632 * 8966 47 11 2 chr11 45241656 45243517 -105540036 - L1PA6 LINE L1 -2 6152 4261 374 234 0 6 chr11 45244062 45244233 -105539320 + GA-rich Low_complexity Low_complexity 1 170 0 204 40 0 0 chr11 45244673 45244698 -105538855 + (A)n Simple_repeat Simple_repeat 1 25 0 2130 98 7 17 chr11 45245892 45246187 -105537366 - AluY SINE Alu -5 306 15 487 331 54 59 chr11 45246187 45246719 -105536834 - L2 LINE L2 -8 3264 2715 594 286 120 62 chr11 45247245 45247710 -105535843 - MLT1J LTR MaLR 0 463 1 799 257 11 6 chr11 45247715 45247894 -105535659 + MLT1H LTR MaLR 1 180 -369 257 272 93 25 chr11 45249090 45249252 -105534301 - L1ME4a LINE L1 -72 6049 5877 2189 115 20 0 chr11 45249292 45249596 -105533957 - AluSx SINE Alu -2 310 1 233 243 71 0 chr11 45250181 45250251 -105533302 + MIR SINE MIR 92 166 -96 739 197 0 0 chr11 45250781 45250908 -105532645 - FLAM_A SINE Alu -2 131 5 1142 203 29 0 chr11 45251157 45251364 -105532189 - MER20 DNA MER1_type -6 213 1 967 218 121 97 chr11 45252102 45252432 -105531121 - MLT1H LTR MaLR -12 537 200 453 285 35 38 chr11 45252962 45253204 -105530349 + MLT1H LTR MaLR 83 289 -120 318 304 36 0 chr11 45254355 45254467 -105529086 - MIR3 SINE MIR -33 175 60 1089 299 59 28 chr11 45255279 45255738 -105527815 - MLT1H LTR MaLR -54 495 23 2136 143 0 6 chr11 45256200 45256514 -105527039 - AluSx SINE Alu 0 312 1 1778 166 35 3 chr11 45256543 45256832 -105526721 + AluJo SINE Alu 2 299 -13 834 126 7 7 chr11 45256934 45257077 -105526476 - Charlie5 DNA MER1_type -27 2585 2443 1129 139 29 34 chr11 45258130 45258338 -105525215 - Tigger1 DNA MER2_type -5 2413 2207 2178 130 16 21 chr11 45258338 45258714 -105524839 + L1MA4 LINE L1 5325 5698 -605 799 164 0 0 chr11 45258720 45258854 -105524699 + Tigger1 DNA MER2_type 2280 2413 -5 3133 129 48 17 chr11 45258938 45259521 -105524032 + L1MA4 LINE L1 5693 6293 -7 14006 112 19 7 chr11 45259523 45261729 -105521824 - Tigger1 DNA MER2_type -185 2233 1 201 121 0 0 chr11 45262251 45262284 -105521269 + (CAA)n Simple_repeat Simple_repeat 1 33 0 198 350 43 34 chr11 45262510 45262627 -105520926 - MIR3 SINE MIR -81 127 10 2189 100 0 23 chr11 45264217 45264518 -105519035 - AluSc SINE Alu -15 294 1 281 255 9 19 chr11 45264619 45264725 -105518828 + LTR67 LTR ERVL 410 514 -43 249 280 56 28 chr11 45264729 45264836 -105518717 - LTR67 LTR ERVL -5 552 443 189 107 0 0 chr11 45265392 45265420 -105518133 + (ATG)n Simple_repeat Simple_repeat 2 29 0 324 340 87 24 chr11 45265427 45265633 -105517920 - MIR SINE MIR -13 249 31 298 317 11 60 chr11 45266540 45266723 -105516830 + LTR16C LTR ERVL 316 489 -2 273 323 90 55 chr11 45266737 45266979 -105516574 - MIR3 SINE MIR 0 262 15 2152 58 101 0 chr11 45267158 45267436 -105516117 - AluY SINE Alu -2 309 4 998 210 45 0 chr11 45267611 45267811 -105515742 - MIR SINE MIR -51 211 3 499 236 0 0 chr11 45268362 45268472 -105515081 - L1PA13 LINE L1 -6198 589 480 4312 132 16 1 chr11 45268472 45269148 -105514405 + L1PA15 LINE L1 5478 6163 -2 1362 246 38 20 chr11 45269225 45269676 -105513877 + L1MA9 LINE L1 5826 6284 -28 1721 167 0 38 chr11 45269678 45269971 -105513582 - AluJb SINE Alu -30 282 1 21 0 0 0 chr11 45269973 45269994 -105513559 + AT_rich Low_complexity Low_complexity 1 21 0 251 288 27 34 chr11 45270010 45270156 -105513397 - L1ME LINE L1 -583 5579 5435 519 318 29 34 chr11 45270608 45270847 -105512706 - MIR SINE MIR -12 250 13 575 302 37 29 chr11 45271126 45271371 -105512182 + MIR SINE MIR 1 247 -15 1591 271 59 14 chr11 45273805 45274314 -105509239 - MLT1H LTR MaLR 0 549 18 404 342 31 35 chr11 45275328 45275556 -105507997 - MIR SINE MIR -16 246 20 1988 140 0 29 chr11 45275983 45276297 -105507256 - AluSc SINE Alu -4 305 1 186 43 0 0 chr11 45276399 45276422 -105507131 + (TTA)n Simple_repeat Simple_repeat 2 24 0 641 316 72 0 chr11 45276747 45276984 -105506569 - L2 LINE L2 -941 2373 2120 2724 104 0 0 chr11 45277660 45278024 -105505529 + THE1B LTR MaLR 1 364 0 2827 182 26 9 chr11 45278165 45278704 -105504849 + MER44D DNA MER2_type 1 603 -2 1052 241 66 30 chr11 45278741 45279073 -105504480 - L2 LINE L2 0 3313 2970 293 82 20 0 chr11 45279401 45279450 -105504103 + (GA)n Simple_repeat Simple_repeat 2 51 0 467 314 0 0 chr11 45279668 45279786 -105503767 + MIR SINE MIR 16 133 -129 261 180 0 0 chr11 45279799 45279849 -105503704 + (CAT)n Simple_repeat Simple_repeat 3 52 0 264 327 168 0 chr11 45280560 45280661 -105502892 - MIR SINE MIR -134 128 11 459 299 59 21 chr11 45281785 45281972 -105501581 + MIR SINE MIR 20 213 -49 682 238 70 20 chr11 45282088 45282120 -105501433 + MER46C DNA MER2_type 83 112 -226 2763 83 11 11 chr11 45282120 45282495 -105501058 - THE1C LTR MaLR 0 375 1 682 238 70 20 chr11 45282495 45282706 -105500847 + MER46C DNA MER2_type 112 338 0 416 337 115 29 chr11 45284376 45284619 -105498934 + L2 LINE L2 2653 2916 -398 214 299 75 19 chr11 45284610 45284690 -105498863 + L2 LINE L2 3201 3290 -23 * 2112 98 11 0 chr11 45284690 45284965 -105498588 - AluSx SINE Alu -18 294 17 214 299 75 19 chr11 45284965 45284991 -105498562 + L2 LINE L2 3290 3313 0 23447 141 31 10 chr11 45285052 45290655 -105492898 + L1PA8A LINE L1 14 5802 -644 * 30376 61 1 1 chr11 45290653 45294706 -105488847 + L1P LINE L1 1 4054 -2092 5663 120 10 0 chr11 45294813 45295689 -105487864 + HSMAR2 DNA Mariner 417 1301 -1 301 229 183 23 chr11 45296472 45296603 -105486950 - MIR SINE MIR -7 255 104 630 210 7 21 chr11 45296719 45296862 -105486691 + MLT1J2 LTR MaLR 21 161 -289 1892 127 85 25 chr11 45298008 45298362 -105485191 - THE1C LTR MaLR 0 375 1 194 346 158 23 chr11 45298538 45298671 -105484882 - L2 LINE L2 0 3272 3122 246 313 53 67 chr11 45298806 45298956 -105484597 - L2 LINE L2 -222 3050 2903 27 29 0 0 chr11 45299320 45299354 -105484199 + AT_rich Low_complexity Low_complexity 1 34 0 243 298 172 7 chr11 45299761 45299912 -105483641 - MIR SINE MIR -1 261 86 188 227 0 23 chr11 45300014 45300058 -105483495 + L2 LINE L2 3230 3272 0 302 294 35 0 chr11 45301000 45301085 -105482468 - MIR SINE MIR -123 139 52 358 329 92 19 chr11 45301140 45301350 -105482203 + MIR SINE MIR 37 260 -2 373 284 203 14 chr11 45301471 45301619 -105481934 - MER5B DNA MER1_type -2 176 1 32 0 0 0 chr11 45302116 45302148 -105481405 + AT_rich Low_complexity Low_complexity 1 32 0 618 309 115 45 chr11 45302194 45302827 -105480726 + L2 LINE L2 2570 3264 -49 2334 99 51 43 chr11 45302827 45303199 -105480354 + THE1C LTR MaLR 1 375 0 618 309 115 45 chr11 45303199 45303253 -105480300 + L2 LINE L2 3264 3313 0 580 286 134 23 chr11 45303371 45303633 -105479920 - L2 LINE L2 0 3313 3023 699 281 36 22 chr11 45304974 45305198 -105478355 - MIR SINE MIR -16 246 20 1928 154 123 10 chr11 45305309 45305692 -105477861 + MSTA LTR MaLR 3 428 0 718 259 38 42 chr11 45306062 45306301 -105477252 + MIR SINE MIR 4 241 -21 587 314 172 15 chr11 45306351 45306752 -105476801 - MLT1K LTR MaLR -31 557 94 789 281 35 13 chr11 45307529 45307760 -105475793 - MIR SINE MIR 0 262 27 349 350 101 0 chr11 45307855 45308072 -105475481 + MIR SINE MIR 18 256 -6 1824 172 14 116 chr11 45308077 45308640 -105474913 + L1MA10 LINE L1 5828 6333 -1 2451 146 2 19 chr11 45308873 45309299 -105474254 - L1MD1 LINE L1 0 6242 5824 518 154 114 8 chr11 45309314 45309437 -105474116 - L1MA9 LINE L1 -4 6308 6173 301 118 0 0 chr11 45309448 45309499 -105474054 - L1MD1 LINE L1 -531 5828 5778 196 313 39 78 chr11 45310252 45310380 -105473173 + L2 LINE L2 3179 3301 -12 201 74 0 0 chr11 45310477 45310504 -105473049 + (T)n Simple_repeat Simple_repeat 1 27 0 183 366 49 0 chr11 45310559 45310641 -105472912 + MIR SINE MIR 18 103 -105 201 332 224 20 chr11 45311442 45311638 -105471915 - MIR SINE MIR -7 255 20 1363 221 65 22 chr11 45312926 45313293 -105470260 + MSTD LTR MaLR 3 385 -11 2856 237 10 18 chr11 45313302 45314031 -105469522 + MSTD-int LTR MaLR 2 724 -1011 1275 58 0 0 chr11 45314133 45314288 -105469265 + AluY SINE Alu 148 302 -9 4943 101 25 4 chr11 45314476 45315208 -105468345 + L1PA15 LINE L1 5417 6163 -2 612 294 112 47 chr11 45315220 45315352 -105468201 + L1ME LINE L1 2844 2966 -3180 1661 217 52 49 chr11 45315352 45315818 -105467735 - MLT1C LTR MaLR 0 467 1 612 294 112 47 chr11 45315818 45316151 -105467402 + L1ME LINE L1 2966 3339 -2807 1148 250 51 0 chr11 45316251 45316543 -105467010 + MER58B DNA MER1_type 19 325 -16 546 362 64 25 chr11 45316564 45317000 -105466553 + L1ME LINE L1 3383 3835 -2311 481 330 48 48 chr11 45317082 45317439 -105466114 + L1ME LINE L1 4059 4415 -1731 426 333 89 17 chr11 45317620 45318144 -105465409 + L1ME LINE L1 5255 5810 -311 821 230 5 60 chr11 45318858 45318982 -105464571 - MER5A DNA MER1_type 0 189 79 2065 77 0 4 chr11 45318982 45319243 -105464310 - AluY SINE Alu -11 300 41 821 230 5 60 chr11 45319243 45319318 -105464235 - MER5A DNA MER1_type -110 79 1 186 318 0 0 chr11 45319433 45319477 -105464076 - MIR3 SINE MIR -54 154 111 423 241 83 23 chr11 45319896 45319970 -105463583 - MIR SINE MIR -34 228 160 1550 126 0 13 chr11 45319970 45320209 -105463344 + MER46A DNA MER2_type 1 236 0 423 241 83 23 chr11 45320209 45320267 -105463286 - MIR SINE MIR -102 160 88 305 328 15 30 chr11 45320371 45320569 -105462984 - MLT2F LTR ERVL -28 635 441 740 201 26 3 chr11 45320691 45320882 -105462671 - MLT2E LTR ERVL -441 222 20 41513 44 4 2 chr11 45320960 45327102 -105456451 + L1PA3 LINE L1 1 6152 -3 1477 167 26 32 chr11 45327107 45327454 -105456099 - L1MA9 LINE L1 -30 6282 5938 226 307 109 62 chr11 45327455 45327647 -105455906 - MIR SINE MIR -60 202 2 2214 119 33 30 chr11 45328603 45328965 -105454588 - THE1B LTR MaLR -1 363 1 318 237 42 42 chr11 45328966 45329084 -105454469 - LTR16C LTR ERVL -9 482 365 937 250 5 15 chr11 45329685 45329889 -105453664 + MIR SINE MIR 12 213 -49 201 182 45 0 chr11 45329897 45329941 -105453612 + (CA)n Simple_repeat Simple_repeat 1 46 0 419 301 196 15 chr11 45330158 45330357 -105453196 + MIR SINE MIR 28 262 0 315 254 102 17 chr11 45330705 45330823 -105452730 - MIR SINE MIR -111 151 24 277 263 38 25 chr11 45330915 45330995 -105452558 - MIR SINE MIR -18 244 164 514 310 17 11 chr11 45331608 45331782 -105451771 - MIR SINE MIR -70 192 18 342 226 137 134 chr11 45331798 45332112 -105451441 - MLT1H LTR MaLR -4 545 231 456 173 19 19 chr11 45332145 45332315 -105451238 - AluY SINE Alu 0 376 207 349 234 13 0 chr11 45332318 45332395 -105451158 - MLT1H LTR MaLR -392 157 80 952 249 47 12 chr11 45333127 45333380 -105450173 + MIR SINE MIR 1 262 0 194 340 128 26 chr11 45333417 45333573 -105449980 - MER5A DNA MER1_type 0 189 18 359 322 128 6 chr11 45333828 45334008 -105449545 - MIR SINE MIR 0 262 61 700 297 81 26 chr11 45334093 45334440 -105449113 + MLT1J LTR MaLR 3 368 -143 4851 176 13 32 chr11 45334527 45334954 -105448599 + L1 LINE L1 4189 4623 -1523 2214 133 123 5 chr11 45334954 45335337 -105448216 + MSTA LTR MaLR 1 428 0 9246 142 16 34 chr11 45335339 45336941 -105446612 + MSTA-int LTR MaLR 3 1576 -4 1858 131 164 50 chr11 45336946 45337329 -105446224 + MSTA LTR MaLR 2 428 0 4851 176 13 32 chr11 45337329 45338034 -105445519 + L1 LINE L1 4628 5308 -838 1917 165 55 19 chr11 45338034 45338512 -105445041 + Tigger2 DNA MER2_type 1 2715 -3 458 160 0 11 chr11 45338514 45338608 -105444945 + L1M LINE L1 5307 5399 -901 12378 39 1 5 chr11 45338981 45341254 -105442299 + L1PA4 LINE L1 3877 6148 -7 902 329 96 36 chr11 45341335 45342377 -105441176 + L2 LINE L2 1986 3090 -182 234 62 0 0 chr11 45342439 45342471 -105441082 + (CA)n Simple_repeat Simple_repeat 2 33 0 3403 77 0 26 chr11 45342480 45342887 -105440666 + MLT2A1 LTR ERVL 1 396 -48 399 21 0 0 chr11 45342887 45342935 -105440618 + (TTATA)n Simple_repeat Simple_repeat 5 52 0 3403 77 0 26 chr11 45342935 45342983 -105440570 + MLT2A1 LTR ERVL 396 444 0 327 25 0 0 chr11 45343026 45343066 -105440487 + (TG)n Simple_repeat Simple_repeat 2 41 0 7159 29 1 2 chr11 45344599 45345498 -105438055 - L1PA4 LINE L1 -4 6151 5254 326 291 94 83 chr11 45345791 45346165 -105437388 + MLT1J LTR MaLR 105 482 -29 476 274 107 65 chr11 45346241 45346642 -105436911 + MLT1L LTR MaLR 140 557 -58 973 201 121 0 chr11 45346655 45346854 -105436699 - MER58A DNA MER1_type -1 223 1 1751 189 0 3 chr11 45346990 45347286 -105436267 + AluJb SINE Alu 1 295 -17 26 30 0 0 chr11 45347501 45347534 -105436019 + AT_rich Low_complexity Low_complexity 1 33 0 234 305 21 42 chr11 45348428 45348523 -105435030 - MIR SINE MIR -79 129 37 263 141 70 0 chr11 45348834 45348905 -105434648 + (TCTA)n Simple_repeat Simple_repeat 3 78 0 274 264 33 0 chr11 45348921 45349042 -105434511 + L1ME4a LINE L1 5995 6119 -2 553 287 108 39 chr11 45350020 45350382 -105433171 + L2 LINE L2 2761 3148 -165 759 69 0 0 chr11 45350382 45350484 -105433069 - AluY SINE Alu -9 302 201 279 0 0 0 chr11 45350487 45350518 -105433035 + (TTA)n Simple_repeat Simple_repeat 3 33 0 2674 41 0 0 chr11 45350519 45350838 -105432715 - L1PA3 LINE L1 -19 6136 5818 1731 35 0 0 chr11 45350838 45351036 -105432517 - AluY SINE Alu -113 198 1 204 253 313 20 chr11 45351077 45351176 -105432377 + L2 LINE L2 3184 3311 -2 2345 116 3 0 chr11 45351565 45351876 -105431677 + AluSx SINE Alu 1 312 0 402 240 0 0 chr11 45352569 45352669 -105430884 - MER103 DNA DNA -12 154 55 439 308 68 39 chr11 45352744 45352978 -105430575 + MIR SINE MIR 6 246 -16 1737 145 32 35 chr11 45354282 45354405 -105429148 - L1PA16 LINE L1 -9 6157 6035 2145 122 3 10 chr11 45354405 45354708 -105428845 - AluSx SINE Alu -9 303 3 1737 145 32 35 chr11 45354708 45354928 -105428625 - L1PA16 LINE L1 -131 6035 5815 565 307 50 34 chr11 45355024 45355262 -105428291 - MIR SINE MIR -1 261 20 716 315 67 4 chr11 45355334 45355572 -105427981 - MIR SINE MIR -3 259 7 1112 147 52 43 chr11 45355647 45355878 -105427675 - MLT1B LTR MaLR -4 386 154 180 0 0 0 chr11 45358119 45358139 -105425414 + (TTG)n Simple_repeat Simple_repeat 2 21 0 189 0 0 0 chr11 45358164 45358185 -105425368 + (TG)n Simple_repeat Simple_repeat 2 22 0 6712 65 6 0 chr11 45358185 45359148 -105424405 - L1PA8 LINE L1 -23 6149 5182 307 276 13 0 chr11 45359348 45359424 -105424129 - L2 LINE L2 -5 3267 3191 990 219 56 14 chr11 45359536 45359751 -105423802 + MER58A DNA MER1_type 1 224 0 267 171 53 92 chr11 45359934 45360010 -105423543 + L2 LINE L2 3232 3304 -9 267 54 0 0 chr11 45360585 45360622 -105422931 + (TG)n Simple_repeat Simple_repeat 2 38 0 2742 80 13 40 chr11 45361152 45361526 -105422027 - THE1B LTR MaLR 0 364 1 5355 158 21 11 chr11 45362036 45362943 -105420610 - MER49 LTR ERV1 0 923 8 389 273 180 0 chr11 45362945 45363073 -105420480 - MER5A DNA MER1_type -30 159 9 1066 207 0 11 chr11 45363091 45363279 -105420274 - MER5A DNA MER1_type -2 187 2 488 279 76 0 chr11 45363290 45363448 -105420105 - MER5B DNA MER1_type -2 176 7 288 256 78 22 chr11 45364215 45364305 -105419248 - MIR3 SINE MIR -19 189 95 526 289 159 0 chr11 45364438 45364639 -105418914 - MIR SINE MIR -21 241 9 2457 142 4 85 chr11 45364748 45365221 -105418332 + MER65A LTR ERV1 11 445 0 1459 215 81 9 chr11 45365308 45365629 -105417924 - MER2 DNA MER2_type 0 344 1 282 195 0 0 chr11 45365664 45365705 -105417848 - MER2 DNA MER2_type -304 41 1 240 309 0 12 chr11 45365835 45365916 -105417637 - MER94 DNA DNA -54 80 1 469 349 90 22 chr11 45366087 45366487 -105417066 - MLT1K LTR MaLR -53 562 99 391 265 71 41 chr11 45366714 45366910 -105416643 + MIR SINE MIR 34 235 -27 24 32 0 0 chr11 45367889 45367920 -105415633 + AT_rich Low_complexity Low_complexity 1 31 0 254 269 74 47 chr11 45367920 45368069 -105415484 - L1ME4a LINE L1 -5 6116 5964 514 321 36 0 chr11 45368161 45368357 -105415196 - L1ME4a LINE L1 -297 5824 5622 1885 131 47 20 chr11 45368475 45368772 -105414781 + AluSx SINE Alu 1 305 -7 2187 136 74 15 chr11 45369938 45370277 -105413276 + THE1B LTR MaLR 1 359 -5 206 314 161 24 chr11 45370394 45370518 -105413035 - L2 LINE L2 0 3272 3132 3304 120 119 18 chr11 45370586 45371159 -105412394 + LTR24C LTR ERV1 5 635 0 201 320 88 48 chr11 45371873 45371998 -105411555 + L2 LINE L2 2904 3033 -239 303 296 20 91 chr11 45372034 45372233 -105411320 - L2 LINE L2 0 3313 3129 2271 160 28 23 chr11 45372355 45372743 -105410810 + MLT1B LTR MaLR 1 390 0 270 258 151 19 chr11 45372744 45372903 -105410650 + L2 LINE L2 3127 3306 -7 2031 140 26 5 chr11 45374047 45374399 -105409154 + LTR7 LTR ERV1 48 450 0 406 286 128 15 chr11 45374801 45374934 -105408619 - MIR SINE MIR -112 150 3 509 244 153 34 chr11 45375214 45375390 -105408163 + MIR SINE MIR 35 231 -31 8410 118 19 12 chr11 45375465 45377131 -105406422 - L1P4 LINE L1 -497 5671 3994 412 184 0 0 chr11 45377150 45377226 -105406327 + L1PA16 LINE L1 6090 6165 -1 482 333 20 10 chr11 45378336 45378531 -105405022 + MER117 DNA MER1_type 1 197 0 585 168 72 16 chr11 45378588 45378713 -105404840 - L1MA7 LINE L1 -1 6290 6159 870 172 20 76 chr11 45379096 45379294 -105404259 + MER5A DNA MER1_type 1 187 -2 1957 204 8 102 chr11 45380215 45380734 -105402819 + MER70A LTR ERVL 1 470 -2 229 274 159 18 chr11 45383154 45383267 -105400286 + MLT1I LTR MaLR 16 144 -265 241 145 116 43 chr11 45383458 45383527 -105400026 + MLT1G1 LTR MaLR 505 578 -17 3668 82 9 0 chr11 45383565 45384014 -105399539 + MLT2A2 LTR ERVL 1 453 0 194 344 106 13 chr11 45384022 45384173 -105399380 + MIR SINE MIR 77 241 -21 1791 179 60 31 chr11 45384190 45384541 -105399012 + MLT1A1 LTR MaLR 1 361 -4 375 259 27 136 chr11 45384557 45384851 -105398702 - MIR SINE MIR 0 262 1 201 239 0 22 chr11 45385947 45385993 -105397560 + GA-rich Low_complexity Low_complexity 1 45 0 5121 128 52 14 chr11 45386277 45387592 -105395961 - Tigger1 DNA MER2_type -5 2413 953 2210 110 3 3 chr11 45387592 45387901 -105395652 + AluSx SINE Alu 1 309 -3 5121 128 52 14 chr11 45387901 45388255 -105395298 - Tigger1 DNA MER2_type -1465 953 614 294 222 49 124 chr11 45389019 45389204 -105394349 - L1MC4a LINE L1 -215 5906 5736 315 145 48 0 chr11 45389531 45389593 -105393960 + MIR SINE MIR 193 257 -5 396 335 71 27 chr11 45389603 45389899 -105393654 + L3 LINE CR1 118 426 -1151 1831 301 71 61 chr11 45390525 45391119 -105392434 - MER4A LTR ERV1 0 600 1 225 253 263 11 chr11 45391512 45391607 -105391946 + L2 LINE L2 3143 3261 -11 608 325 108 38 chr11 45391617 45391770 -105391783 + L3 LINE CR1 483 624 -953 4427 101 0 0 chr11 45391770 45392324 -105391229 + MER41A LTR ERV1 1 554 0 608 325 108 38 chr11 45392324 45392752 -105390801 + L3 LINE CR1 624 1105 -472 958 211 17 50 chr11 45392805 45393037 -105390516 - L1MA4 LINE L1 -1 6299 6061 222 118 0 0 chr11 45393037 45393071 -105390482 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 1993 124 14 0 chr11 45393071 45393353 -105390200 - AluSx SINE Alu -24 288 3 958 211 17 50 chr11 45393353 45393417 -105390136 - L1MA4 LINE L1 -237 6063 6012 388 324 78 11 chr11 45393541 45393720 -105389833 + L3 LINE CR1 1328 1518 -59 244 281 12 12 chr11 45395397 45395479 -105388074 + LTR58 LTR ERV1 350 431 -248 1627 54 54 54 chr11 45396328 45396568 -105386985 + AluY SINE Alu 69 308 -3 415 232 64 24 chr11 45396680 45396805 -105386748 - MLT1J2 LTR MaLR -277 173 44 182 270 240 0 chr11 45397042 45397142 -105386411 - MIR SINE MIR -73 189 66 333 68 0 0 chr11 45398222 45398266 -105385287 + (TG)n Simple_repeat Simple_repeat 1 44 0 28 48 0 0 chr11 45398266 45398308 -105385245 + AT_rich Low_complexity Low_complexity 1 42 0 2729 104 16 19 chr11 45398764 45399140 -105384413 - THE1C LTR MaLR 0 375 1 370 325 142 30 chr11 45399172 45399341 -105384212 + MIR3 SINE MIR 21 208 0 2897 36 0 0 chr11 45399430 45399763 -105383790 - L1PA4 LINE L1 -1920 4226 3894 * 7575 29 1 0 chr11 45399760 45400647 -105382906 + L1PA4 LINE L1 4229 5116 -1030 2560 26 13 3 chr11 45400641 45400943 -105382610 - L1PA2 LINE L1 -515 5640 5336 * 4730 16 0 0 chr11 45400943 45401448 -105382105 + L1PA2 LINE L1 5647 6153 -2 7783 38 5 0 chr11 45401462 45402514 -105381039 + L1PA4 LINE L1 5098 6153 -2 396 292 115 73 chr11 45403569 45404072 -105379481 + L1M2 LINE L1 529 1050 -5799 349 275 0 0 chr11 45405611 45405691 -105377862 - L2 LINE L2 0 3313 3234 302 226 54 21 chr11 45405846 45405939 -105377614 + MLT1L LTR MaLR 143 238 -377 2274 199 24 13 chr11 45406032 45406499 -105377054 - L1M2 LINE L1 -6230 619 148 342 273 211 12 chr11 45407110 45407271 -105376282 - L2 LINE L2 -21 3292 3100 2169 298 50 25 chr11 45407339 45408186 -105375367 - L2 LINE L2 -369 2945 2078 225 122 24 0 chr11 45408317 45408358 -105375195 + L2 LINE L2 3270 3311 -2 352 276 82 0 chr11 45409955 45410053 -105373500 + MLT1J2 LTR MaLR 343 448 -2 222 136 0 0 chr11 45410295 45410339 -105373214 + (TG)n Simple_repeat Simple_repeat 2 45 0 648 163 0 20 chr11 45410394 45410541 -105373012 + CT-rich Low_complexity Low_complexity 4 147 0 288 330 28 9 chr11 45411063 45411169 -105372384 - MIR SINE MIR -61 147 40 439 248 21 41 chr11 45411289 45411434 -105372119 + MLT1J1 LTR MaLR 295 436 -10 537 309 129 4 chr11 45411605 45411838 -105371715 + MLT1K LTR MaLR 322 583 -5 191 408 27 27 chr11 45412490 45412713 -105370840 + L2 LINE L2 2831 3053 -219 309 294 65 0 chr11 45412895 45412987 -105370566 - MIR SINE MIR -163 99 2 249 288 48 56 chr11 45413038 45413163 -105370390 + L2 LINE L2 3190 3313 0 198 325 72 12 chr11 45413975 45414058 -105369495 - MIR3 SINE MIR -24 184 97 381 284 60 8 chr11 45414559 45414693 -105368860 - MIR SINE MIR -49 213 73 262 266 31 0 chr11 45414866 45414930 -105368623 + MIR SINE MIR 189 254 -8 769 293 9 4 chr11 45415663 45415888 -105367665 + MIR SINE MIR 3 228 -34 462 225 0 0 chr11 45416105 45416194 -105367359 + MER81 DNA DNA 1 89 -25 707 242 75 83 chr11 45416304 45416963 -105366590 - L1MC5 LINE L1 -890 7071 6414 26 30 0 0 chr11 45417324 45417357 -105366196 + AT_rich Low_complexity Low_complexity 1 33 0 2189 103 14 0 chr11 45417669 45417960 -105365593 - AluY SINE Alu -16 295 1 543 287 61 0 chr11 45418325 45418506 -105365047 - HAL1 LINE L1 -994 1513 1322 254 243 53 130 chr11 45418756 45418925 -105364628 - HAL1 LINE L1 -2341 166 11 778 221 5 19 chr11 45420001 45420209 -105363344 - L1PA13 LINE L1 -560 5603 5399 3793 115 2 5 chr11 45420209 45420783 -105362770 + L1PA13 LINE L1 5592 6163 0 691 238 130 13 chr11 45420824 45421055 -105362498 - MIR SINE MIR 0 262 5 305 368 23 15 chr11 45421434 45421567 -105361986 + MIR3 SINE MIR 75 208 0 191 330 57 47 chr11 45422015 45422121 -105361432 - MIR SINE MIR -109 153 47 2626 91 8 0 chr11 45422330 45422682 -105360871 + THE1A LTR MaLR 1 355 0 8708 111 5 3 chr11 45422682 45423975 -105359578 + THE1A-int LTR MaLR 1 1295 -285 1602 94 9 0 chr11 45423975 45424208 -105359345 + THE1A LTR MaLR 121 355 0 1154 228 48 91 chr11 45424545 45424738 -105358815 + L2 LINE L2 2175 2375 -939 510 239 9 0 chr11 45424738 45424851 -105358702 + MER81 DNA DNA 1 114 0 450 0 0 0 chr11 45424851 45424901 -105358652 + (CA)n Simple_repeat Simple_repeat 2 51 0 1154 228 48 91 chr11 45424901 45425100 -105358453 + L2 LINE L2 2373 2551 -763 314 296 115 45 chr11 45425098 45425341 -105358212 + L2 LINE L2 3050 3309 -4 * 180 262 0 0 chr11 45426855 45426897 -105356656 - L2 LINE L2 -14 3299 3258 1170 273 128 38 chr11 45427625 45428239 -105355314 + L2 LINE L2 2618 3297 -16 211 200 0 44 chr11 45428206 45428251 -105355302 + MIR SINE MIR 220 262 0 * 642 288 106 25 chr11 45428479 45428715 -105354838 - MIR SINE MIR 0 262 8 579 213 12 41 chr11 45428715 45428884 -105354669 - MER106B DNA MER1_type 0 1059 896 254 315 154 15 chr11 45429010 45429140 -105354413 + L2 LINE L2 3118 3265 -7 699 269 50 50 chr11 45429701 45430058 -105353495 + LTR33 LTR ERVL 1 357 -164 2296 226 5 51 chr11 45430060 45430644 -105352909 + MER74A LTR ERVL 1 557 -1 256 236 19 28 chr11 45430658 45430764 -105352789 + LTR33 LTR ERVL 413 517 -4 256 231 46 0 chr11 45430890 45430955 -105352598 + L2 LINE L2 3232 3299 -14 279 360 154 0 chr11 45431036 45431172 -105352381 - MIR3 SINE MIR -11 197 41 710 307 19 5 chr11 45431244 45431456 -105352097 - MIR SINE MIR -32 230 16 1813 126 29 26 chr11 45432706 45433056 -105350497 + L1MC2 LINE L1 5985 6335 -9 386 220 55 9 chr11 45433212 45433321 -105350232 - MIR SINE MIR 0 262 149 221 218 18 18 chr11 45433358 45433413 -105350140 - L2 LINE L2 -37 3276 3222 194 395 58 0 chr11 45433411 45433497 -105350056 - MIR SINE MIR -157 105 15 * 434 294 0 49 chr11 45433500 45433643 -105349910 + MIR SINE MIR 67 202 -60 1364 227 131 52 chr11 45433888 45434068 -105349485 + MLT1E LTR MaLR 3 167 -426 2304 101 3 0 chr11 45434068 45434365 -105349188 - AluY SINE Alu -13 298 1 1364 227 131 52 chr11 45434365 45434727 -105348826 + MLT1E LTR MaLR 167 593 0 287 321 160 0 chr11 45435100 45435206 -105348347 - L2 LINE L2 0 3313 3191 25 0 0 0 chr11 45435445 45435470 -105348083 + AT_rich Low_complexity Low_complexity 1 25 0 429 269 67 0 chr11 45435476 45435595 -105347958 - L2 LINE L2 0 3313 3187 529 300 92 38 chr11 45435646 45435749 -105347804 - LTR33 LTR ERVL 0 521 425 1316 144 43 0 chr11 45435749 45435957 -105347596 + MER20 DNA MER1_type 3 219 0 529 300 92 38 chr11 45435957 45436320 -105347233 - LTR33 LTR ERVL -96 425 3 1456 154 163 30 chr11 45436405 45436736 -105346817 + THE1C LTR MaLR 1 375 0 21 0 0 0 chr11 45437156 45437177 -105346376 + AT_rich Low_complexity Low_complexity 1 21 0 2733 133 17 5 chr11 45437686 45438106 -105345447 + MER61B LTR ERV1 1 425 0 312 315 9 18 chr11 45438638 45438749 -105344804 - MIR SINE MIR -113 149 40 186 196 22 22 chr11 45439389 45439435 -105344118 - L2 LINE L2 0 3272 3227 * 970 228 33 37 chr11 45439401 45439642 -105343911 - MIR SINE MIR -5 257 18 1639 147 49 7 chr11 45441034 45441319 -105342234 - AluSx SINE Alu -15 297 1 226 274 53 32 chr11 45441323 45441418 -105342135 + MIR SINE MIR 110 206 -56 302 277 21 21 chr11 45442558 45442652 -105340901 - MIR SINE MIR -98 164 71 12673 148 14 10 chr11 45442768 45446075 -105337478 - L1MA3 LINE L1 -166 6139 2816 594 211 54 0 chr11 45446225 45446372 -105337181 - L1MA10 LINE L1 0 6334 6180 302 306 126 16 chr11 45446410 45446593 -105336960 - L1MCb LINE L1 -3739 2825 2623 796 301 49 0 chr11 45449093 45449319 -105334234 + MIR SINE MIR 5 241 -21 889 97 30 0 chr11 45449347 45449512 -105334041 + GA-rich Low_complexity Low_complexity 2 171 0 2216 124 0 3 chr11 45450164 45450463 -105333090 + AluSg SINE Alu 1 298 -12 183 42 0 0 chr11 45450463 45450487 -105333066 + (TA)n Simple_repeat Simple_repeat 2 25 0 246 303 330 16 chr11 45450940 45451128 -105332425 + MIR SINE MIR 13 259 -3 401 350 34 21 chr11 45451242 45451479 -105332074 + L2 LINE L2 2619 2858 -456 416 272 18 0 chr11 45451550 45451664 -105331889 - HAL1 LINE L1 -726 1781 1666 340 265 154 0 chr11 45451682 45451818 -105331735 - HAL1 LINE L1 -895 1612 1456 379 211 55 31 chr11 45451875 45452003 -105331550 + L2 LINE L2 1290 1420 -1894 3996 215 50 18 chr11 45452058 45453438 -105330115 - L1MCb LINE L1 -4850 1195 4 1825 269 77 49 chr11 45453460 45454200 -105329353 + L2 LINE L2 1474 2234 -1080 794 231 175 14 chr11 45454200 45454486 -105329067 + MLT1J2 LTR MaLR 1 332 -118 198 275 77 11 chr11 45454748 45454839 -105328714 - L2 LINE L2 -405 2909 2813 3677 148 80 5 chr11 45455196 45455857 -105327696 + MER50 LTR ERV1 1 711 -23 1010 239 162 24 chr11 45456653 45457029 -105326524 + MLT1J2 LTR MaLR 1 428 -22 238 289 78 22 chr11 45457558 45457648 -105325905 - MIR3 SINE MIR -19 189 95 540 289 159 0 chr11 45457781 45457982 -105325571 - MIR SINE MIR -21 241 9 399 283 197 7 chr11 45459113 45459265 -105324288 + MER5A DNA MER1_type 9 189 0 534 259 30 0 chr11 45459439 45459574 -105323979 - MIR SINE MIR -17 245 107 388 267 10 0 chr11 45459728 45459829 -105323724 + MIR SINE MIR 150 251 -11 228 215 0 62 chr11 45459829 45459894 -105323659 + CT-rich Low_complexity Low_complexity 1 61 0 825 220 85 18 chr11 45460292 45460515 -105323038 + MIR SINE MIR 6 243 -19 257 317 106 7 chr11 45460536 45460678 -105322875 + MIR SINE MIR 101 256 -6 896 239 118 17 chr11 45460987 45461284 -105322269 + L2 LINE L2 2230 2556 -758 923 124 0 32 chr11 45461573 45461759 -105321794 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 1206 42 30 0 chr11 45461903 45462026 -105321527 + (TTTC)n Simple_repeat Simple_repeat 1 298 0 1206 42 30 0 chr11 45462026 45462193 -105321360 + (TTTC)n Simple_repeat Simple_repeat 2 173 0 1263 307 68 4 chr11 45462398 45462846 -105320707 + L2 LINE L2 2538 3016 -297 220 150 0 0 chr11 45462880 45462920 -105320633 + L2 LINE L2 3274 3313 0 1294 255 146 98 chr11 45462934 45463397 -105320156 - HAL1 LINE L1 -1045 1462 1023 1638 47 0 11 chr11 45463397 45463587 -105319966 + L1PA3 LINE L1 5967 6154 -1 1294 255 146 98 chr11 45463587 45464139 -105319414 - HAL1 LINE L1 -1484 1023 367 1548 193 7 33 chr11 45464139 45464445 -105319108 - AluJo SINE Alu -7 305 8 1294 255 146 98 chr11 45464445 45464748 -105318805 - HAL1 LINE L1 -2140 367 80 17625 65 1 1 chr11 45464749 45466954 -105316599 + L1P LINE L1 1 2205 -3941 3548 226 54 72 chr11 45467525 45467641 -105315912 - L1MEc LINE L1 -5198 1198 1081 2295 96 7 0 chr11 45467641 45467944 -105315609 - AluY SINE Alu -6 305 1 3548 226 54 72 chr11 45467944 45468583 -105314970 - L1MEc LINE L1 -5315 1081 469 2076 118 23 10 chr11 45468583 45468888 -105314665 - AluSc SINE Alu 0 309 1 3548 226 54 72 chr11 45468888 45469315 -105314238 - L1MEc LINE L1 -5927 469 36 613 243 8 68 chr11 45469318 45469553 -105314000 + MER20B DNA MER1_type 561 781 -2 609 213 16 0 chr11 45469565 45469687 -105313866 + MER94 DNA DNA 1 124 -10 216 158 0 0 chr11 45470060 45470098 -105313455 + T-rich Low_complexity Low_complexity 1 38 0 984 249 32 12 chr11 45470191 45470444 -105313109 - MIR SINE MIR 0 262 5 1126 59 0 40 chr11 45470523 45470675 -105312878 + L1PA4 LINE L1 6007 6152 -3 413 294 79 75 chr11 45470880 45471349 -105312204 - L2 LINE L2 -837 2477 2007 1863 191 87 30 chr11 45471422 45471857 -105311696 - MLT1C LTR MaLR 0 467 8 831 186 20 138 chr11 45473221 45473302 -105310251 + MER20 DNA MER1_type 1 90 -129 1667 143 11 4 chr11 45473302 45473568 -105309985 - L1MB3 LINE L1 -7 6176 5909 831 186 20 138 chr11 45473568 45473685 -105309868 + MER20 DNA MER1_type 90 167 -52 2195 29 8 0 chr11 45473685 45473930 -105309623 + L1PA4 LINE L1 5909 6155 0 831 186 20 138 chr11 45473930 45473977 -105309576 + MER20 DNA MER1_type 167 218 -1 559 253 55 32 chr11 45474014 45474310 -105309243 - MLT1I LTR MaLR -15 394 61 1942 152 0 25 chr11 45474428 45474744 -105308809 - AluJb SINE Alu -4 308 1 307 244 133 0 chr11 45475147 45475237 -105308316 - MER5B DNA MER1_type -2 176 75 457 332 69 10 chr11 45475589 45475791 -105307762 - MIR SINE MIR 0 262 49 297 201 138 94 chr11 45476688 45476847 -105306706 - HAL1 LINE L1 -2295 212 47 1797 128 38 21 chr11 45477229 45477519 -105306034 - AluSx SINE Alu -17 295 1 239 253 91 50 chr11 45477895 45477943 -105305610 - MIR3 SINE MIR -8 200 155 370 315 66 0 chr11 45477943 45478124 -105305429 + MER117 DNA MER1_type 4 196 -1 239 253 91 50 chr11 45478124 45478174 -105305379 - MIR3 SINE MIR -53 155 98 722 143 4 2 chr11 45478315 45478574 -105304979 + AluSx SINE Alu 1 311 -1 517 250 15 0 chr11 45478581 45478713 -105304840 - L2 LINE L2 0 3313 3180 1163 259 110 23 chr11 45478922 45479312 -105304241 + L2 LINE L2 2885 3308 -5 1410 170 9 0 chr11 45479791 45480020 -105303533 + AluJb SINE Alu 68 298 -14 270 282 0 14 chr11 45480023 45480094 -105303459 - MIR3 SINE MIR -27 181 112 555 241 4 86 chr11 45480647 45480879 -105302674 - MER102a DNA MER1_type -3 327 115 257 105 0 0 chr11 45481240 45481278 -105302275 - Alu SINE Alu -24 276 239 1301 187 123 56 chr11 45482166 45482508 -105301045 - MLT1A1 LTR MaLR 0 365 1 393 243 121 59 chr11 45482561 45482783 -105300770 + MIR SINE MIR 20 262 0 475 231 43 0 chr11 45483061 45483178 -105300375 - L1MD3 LINE L1 -5 7990 7869 324 262 154 86 chr11 45483219 45483440 -105300113 - L1ME4a LINE L1 -226 5895 5660 1857 167 7 10 chr11 45483440 45483740 -105299813 - AluJo SINE Alu -11 301 3 6056 88 5 2 chr11 45483763 45484585 -105298968 - L1PA10 LINE L1 -4 6164 5341 2010 179 25 8 chr11 45484646 45485042 -105298511 + HSMAR2 DNA Mariner 1 403 -899 1793 165 0 11 chr11 45486088 45486373 -105297180 + AluJo SINE Alu 1 282 -30 229 333 29 10 chr11 45487900 45488002 -105295551 + L2 LINE L2 2948 3051 -221 650 293 22 31 chr11 45488652 45488874 -105294679 - MIR SINE MIR -32 230 11 430 264 95 66 chr11 45489589 45489831 -105293722 - MIR SINE MIR -10 252 4 1059 239 225 24 chr11 45491030 45491448 -105292105 + MLT1D LTR MaLR 1 502 -3 509 289 8 0 chr11 45491811 45491932 -105291621 + MIR SINE MIR 13 134 -128 202 288 0 9 chr11 45492050 45492117 -105291436 - MIR SINE MIR -69 139 74 6034 125 24 5 chr11 45492358 45493986 -105289567 - L1PA15 LINE L1 0 6165 4506 6299 241 78 33 chr11 45494113 45495770 -105287783 + MSTD-int LTR MaLR 2 1733 -2 1801 167 51 94 chr11 45495772 45496186 -105287367 + MSTD LTR MaLR 1 396 0 599 171 9 0 chr11 45496460 45496565 -105286988 + MSTD-int LTR MaLR 1628 1733 -2 1637 169 58 101 chr11 45496567 45496981 -105286572 + MSTD LTR MaLR 1 396 0 256 326 31 31 chr11 45497067 45497165 -105286388 - MIR3 SINE MIR -105 103 6 338 336 10 0 chr11 45497949 45498053 -105285500 + L2 LINE L2 2194 2298 -1016 885 233 155 28 chr11 45498314 45498631 -105284922 + L1MC/D LINE L1 5282 5638 -2170 210 195 110 0 chr11 45498869 45498951 -105284602 + L2 LINE L2 3112 3202 -111 415 336 22 0 chr11 45499402 45499628 -105283925 - L1MC4a LINE L1 -1906 5902 5672 750 282 48 31 chr11 45499634 45499985 -105283568 - L1MC4a LINE L1 -2196 5612 5256 2231 91 0 10 chr11 45500321 45500617 -105282936 - AluY SINE Alu -18 293 1 370 333 0 14 chr11 45500923 45501064 -105282489 + MIR SINE MIR 124 262 0 250 143 0 0 chr11 45501070 45501112 -105282441 - L1MA6 LINE L1 -6 6294 6253 1323 236 137 22 chr11 45501175 45501591 -105281962 + MLT1K LTR MaLR 95 558 -30 2296 84 0 10 chr11 45501658 45501955 -105281598 - AluY SINE Alu -17 294 1 710 235 8 0 chr11 45501967 45502099 -105281454 - FLAM_A SINE Alu 0 133 1 420 20 0 0 chr11 45502514 45502563 -105280990 + (CA)n Simple_repeat Simple_repeat 1 49 0 206 159 0 23 chr11 45502903 45502947 -105280606 + (TG)n Simple_repeat Simple_repeat 1 43 0 276 377 49 16 chr11 45503054 45503176 -105280377 + L2 LINE L2 3101 3226 -46 16114 27 3 1 chr11 45503669 45506235 -105277318 - L1PA3 LINE L1 -5 6150 3581 398 196 80 72 chr11 45506593 45506731 -105276822 - MLT1H LTR MaLR 0 549 411 1212 110 25 2 chr11 45507032 45507223 -105276330 - pTR5 LTR ERV1 -2044 394 66 352 189 33 22 chr11 45507223 45507313 -105276240 - LTR30 LTR ERV1 -80 642 552 5682 115 47 67 chr11 45507314 45508499 -105275054 - pTR5 LTR ERV1 -406 2032 741 230 245 0 0 chr11 45509250 45509299 -105274254 + MIR SINE MIR 182 230 -32 192 25 0 75 chr11 45509495 45509535 -105274018 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 373 344 26 7 chr11 45510058 45510209 -105273344 + MIR SINE MIR 33 186 -76 * 546 345 42 32 chr11 45510199 45510521 -105273032 + L2 LINE L2 2707 3035 -278 468 221 19 0 chr11 45510528 45510682 -105272871 + (CAT)n Simple_repeat Simple_repeat 3 159 0 770 257 34 10 chr11 45510692 45510898 -105272655 - MIR SINE MIR -7 255 45 309 292 73 52 chr11 45511025 45511217 -105272336 + L2 LINE L2 3118 3313 0 42887 38 25 2 chr11 45511816 45517859 -105265694 - L1PA3 LINE L1 0 6155 1 1383 78 6 0 chr11 45517926 45518105 -105265448 - L1PA8 LINE L1 0 6172 5993 333 311 33 50 chr11 45518553 45518733 -105264820 - L1ME3A LINE L1 -220 5950 5774 783 273 164 45 chr11 45518978 45519469 -105264084 - L2 LINE L2 0 3313 2730 782 249 53 0 chr11 45520730 45520899 -105262654 - MER45A DNA AcHobo 0 178 1 365 338 107 27 chr11 45520957 45521182 -105262371 + MIR SINE MIR 19 261 -1 1996 134 0 0 chr11 45521798 45522073 -105261480 + AluSx SINE Alu 3 277 -35 888 95 29 15 chr11 45522642 45522779 -105260774 - L1MA8 LINE L1 -12 6279 6141 236 314 19 29 chr11 45522785 45522890 -105260663 - MLT1J LTR MaLR -180 331 228 1383 136 19 0 chr11 45525084 45525290 -105258263 - AluSc SINE Alu -12 297 88 2161 179 92 3 chr11 45525359 45525750 -105257803 + MSTB LTR MaLR 1 426 0 2166 122 3 13 chr11 45526710 45527022 -105256531 + AluSg1 SINE Alu 1 309 0 1171 153 0 0 chr11 45527022 45527192 -105256361 + AluSg/x SINE Alu 134 303 -9 301 295 0 0 chr11 45527199 45527277 -105256276 - MER45 DNA AcHobo -74 1507 1430 * 3137 235 21 37 chr11 45527264 45527530 -105256023 - MER45B DNA AcHobo -240 800 531 1292 203 54 103 chr11 45527530 45527939 -105255614 - MLT1B LTR MaLR 0 390 2 3137 235 21 37 chr11 45527939 45528434 -105255119 - MER45B DNA AcHobo -509 531 51 323 340 78 44 chr11 45528506 45528777 -105254776 - MLT1J LTR MaLR -8 503 224 22 0 0 0 chr11 45528821 45528843 -105254710 + AT_rich Low_complexity Low_complexity 1 22 0 361 211 0 13 chr11 45528953 45529029 -105254524 - MLT1L LTR MaLR -537 78 4 * 784 293 110 55 chr11 45529029 45529550 -105254003 - MLT1G1 LTR MaLR -23 572 23 512 229 51 17 chr11 45530070 45530245 -105253308 + Charlie7 DNA MER1_type 2429 2609 -3 2487 76 0 3 chr11 45530375 45530678 -105252875 + AluY SINE Alu 1 302 -9 688 313 31 20 chr11 45530813 45530980 -105252573 - L2 LINE L2 -38 3275 3102 2137 128 3 3 chr11 45530980 45531292 -105252261 + AluSx SINE Alu 1 312 0 688 313 31 20 chr11 45531292 45531418 -105252135 - L2 LINE L2 -211 3102 2979 2145 115 7 0 chr11 45531486 45531781 -105251772 - AluSq SINE Alu -16 297 1 2383 149 65 34 chr11 45532204 45532619 -105250934 + MSTA LTR MaLR 1 428 0 611 267 54 32 chr11 45532675 45532896 -105250657 - LTR16B LTR ERVL -2 462 237 186 43 0 0 chr11 45533339 45533362 -105250191 + (TG)n Simple_repeat Simple_repeat 2 24 0 386 247 32 0 chr11 45534397 45534490 -105249063 - MIR3 SINE MIR -9 199 104 219 263 95 21 chr11 45534477 45534572 -105248981 + MIR3 SINE MIR 5 106 -102 * 7071 177 20 17 chr11 45535316 45537306 -105246247 + L1PA14 LINE L1 4079 6088 -73 2314 133 27 29 chr11 45537306 45537682 -105245871 + THE1C LTR MaLR 1 375 0 7071 177 20 17 chr11 45537682 45537755 -105245798 + L1PA14 LINE L1 6088 6159 -2 1547 162 28 4 chr11 45538114 45538367 -105245186 - AluSg SINE Alu -2 308 50 198 380 13 0 chr11 45539212 45539291 -105244262 - L2 LINE L2 -5 3267 3188 2772 73 41 0 chr11 45539568 45539909 -105243644 + THE1A LTR MaLR 1 355 0 246 346 49 43 chr11 45539925 45540087 -105243466 - L2 LINE L2 -208 3064 2902 7439 106 7 5 chr11 45540739 45541820 -105241733 - L1P LINE L1 -3188 2958 1875 * 11918 88 2 2 chr11 45541818 45543427 -105240126 + L1PA7 LINE L1 2996 4605 -1541 6785 72 0 0 chr11 45543427 45544243 -105239310 + L1PA7 LINE L1 5333 6149 -5 303 221 18 55 chr11 45544578 45544626 -105238927 + (TATAA)n Simple_repeat Simple_repeat 5 53 -108 2970 139 14 2 chr11 45544626 45545049 -105238504 + MSTA LTR MaLR 1 428 0 303 221 18 55 chr11 45545049 45545163 -105238390 + (TATAA)n Simple_repeat Simple_repeat 53 161 0 249 341 36 22 chr11 45545382 45545520 -105238033 + MIR SINE MIR 13 152 -110 1065 264 10 16 chr11 45545734 45546037 -105237516 + AluY SINE Alu 1 301 0 236 294 0 0 chr11 45546136 45546228 -105237325 + L1MEc LINE L1 1162 1253 -5143 411 250 57 28 chr11 45546238 45546414 -105237139 - MER20B DNA MER1_type -156 627 447 235 313 48 0 chr11 45546438 45546521 -105237032 - MER20B DNA MER1_type -45 174 88 320 202 9 101 chr11 45546624 45546733 -105236820 + MER58C DNA MER1_type 44 142 -73 244 250 12 25 chr11 45546733 45546813 -105236740 + GA-rich Low_complexity Low_complexity 2 80 0 1474 148 86 41 chr11 45546918 45547209 -105236344 - AluJo SINE Alu -4 308 5 1977 261 69 34 chr11 45547242 45547883 -105235670 - MLT2F LTR ERVL 0 663 1 186 267 44 0 chr11 45548361 45548406 -105235147 - L2 LINE L2 -12 3260 3214 336 237 108 0 chr11 45549010 45549103 -105234450 - L2 LINE L2 0 3313 3211 1860 60 0 0 chr11 45549393 45549611 -105233942 - L1PA7 LINE L1 -2 6152 5935 873 166 7 0 chr11 45549616 45549767 -105233786 + L1MB2 LINE L1 6010 6161 -10 2062 192 115 0 chr11 45549949 45550496 -105233057 - SATR1 Satellite Satellite -4 609 1 2193 168 102 53 chr11 45550525 45551591 -105231962 - SATR1 Satellite Satellite 0 1117 1 2328 177 120 22 chr11 45551616 45552493 -105231060 - SATR1 Satellite Satellite 0 963 1 2473 138 119 0 chr11 45552521 45552941 -105230612 - SATR1 Satellite Satellite 0 470 1 2262 155 119 2 chr11 45552970 45553383 -105230170 - SATR1 Satellite Satellite 0 470 10 427 231 7 36 chr11 45553400 45553707 -105229846 + (TTA)n Simple_repeat Simple_repeat 1 297 0 2292 167 83 18 chr11 45553707 45554803 -105228750 + SATR1 Satellite Satellite 1 1167 -92 2510 155 107 0 chr11 45554828 45555400 -105228153 + SATR1 Satellite Satellite 1 632 -4 2446 176 114 19 chr11 45555434 45561506 -105222047 - SATR1 Satellite Satellite 0 6651 1 1637 215 83 0 chr11 45561517 45561856 -105221697 - SATR1 Satellite Satellite -87 383 17 238 179 21 42 chr11 45561864 45561959 -105221594 + (TAA)n Simple_repeat Simple_repeat 2 94 0 353 229 11 44 chr11 45562036 45562219 -105221334 + (TTA)n Simple_repeat Simple_repeat 2 178 0 2406 172 107 4 chr11 45562237 45564263 -105219290 + SATR1 Satellite Satellite 1 2235 -93 7048 60 26 0 chr11 45564303 45565174 -105218379 - MER11D LTR ERVK -3 894 1 16181 42 1 1 chr11 45565174 45567214 -105216339 - HERVK11D LTR ERVK 0 7752 5711 * 17962 36 1 1 chr11 45567208 45569455 -105214098 - HERVK11D LTR ERVK -2432 5320 3073 6825 45 1 0 chr11 45569455 45570316 -105213237 - HERVK11D LTR ERVK -6890 862 1 6919 69 28 0 chr11 45570316 45571189 -105212364 - MER11D LTR ERVK 0 897 1 2020 191 102 5 chr11 45571189 45572363 -105211190 - SATR1 Satellite Satellite -2 1287 1 1639 183 166 10 chr11 45572395 45572859 -105210694 - SATR1 Satellite Satellite -1 536 1 259 202 5 78 chr11 45572860 45573053 -105210500 + (TTA)n Simple_repeat Simple_repeat 1 179 0 30 0 0 0 chr11 45573072 45573102 -105210451 + AT_rich Low_complexity Low_complexity 1 30 0 236 229 14 42 chr11 45573106 45573250 -105210303 + (TTA)n Simple_repeat Simple_repeat 3 142 0 2176 175 96 2 chr11 45573252 45575078 -105208475 + SATR1 Satellite Satellite 1 1998 -419 312 222 148 0 chr11 45575457 45575538 -105208015 + MIR SINE MIR 49 141 -121 682 254 23 12 chr11 45575728 45575901 -105207652 - MER5B DNA MER1_type -3 175 1 4393 122 17 30 chr11 45575979 45576360 -105207193 + L1MA5 LINE L1 5541 5908 -392 1741 146 134 27 chr11 45576360 45576689 -105206864 + THE1B LTR MaLR 1 364 0 4393 122 17 30 chr11 45576689 45577077 -105206476 + L1MA5 LINE L1 5908 6300 0 282 274 96 37 chr11 45577139 45577274 -105206279 - MIR SINE MIR -8 254 112 309 317 127 7 chr11 45577359 45577501 -105206052 + MIR3 SINE MIR 19 177 -31 236 230 88 90 chr11 45577502 45577615 -105205938 + MIR SINE MIR 42 149 -59 598 366 30 9 chr11 45578596 45578828 -105204725 + MIR SINE MIR 7 243 -19 339 350 68 17 chr11 45578839 45579016 -105204537 + MIR SINE MIR 53 238 -24 273 312 156 9 chr11 45579096 45579205 -105204348 + L2 LINE L2 3143 3267 -5 1457 220 110 17 chr11 45579320 45579738 -105203815 + MLT2B1 LTR ERVL 1 457 -63 300 27 0 0 chr11 45579740 45579777 -105203776 + (TG)n Simple_repeat Simple_repeat 2 38 0 656 328 45 35 chr11 45579999 45580313 -105203240 - L3 LINE CR1 -1 1576 1260 3325 74 9 14 chr11 45581666 45582112 -105201441 - MLT2A1 LTR ERVL 0 444 1 28 29 0 0 chr11 45582680 45582715 -105200838 + AT_rich Low_complexity Low_complexity 1 35 0 190 304 75 60 chr11 45582762 45582963 -105200590 + L2 LINE L2 2805 3008 -264 538 268 60 6 chr11 45583376 45583544 -105200009 + MIR SINE MIR 65 241 -21 221 266 55 64 chr11 45583745 45583822 -105199731 + L2 LINE L2 3202 3279 -34 2289 182 51 27 chr11 45583822 45584311 -105199242 + MLT1D LTR MaLR 5 505 0 221 266 55 64 chr11 45584311 45584342 -105199211 + L2 LINE L2 3279 3309 -4 1647 191 24 3 chr11 45584370 45584664 -105198889 + AluJo SINE Alu 1 300 -12 396 258 8 16 chr11 45584806 45584930 -105198623 - LTR67 LTR ERVL 0 557 435 1668 208 96 28 chr11 45585982 45586419 -105197134 + MLT1C LTR MaLR 1 467 0 1881 132 48 58 chr11 45586581 45586960 -105196593 - THE1C LTR MaLR 0 375 1 913 121 20 13 chr11 45587010 45587159 -105196394 + L1PA16 LINE L1 6008 6157 -9 202 235 20 0 chr11 45587812 45587863 -105195690 - L2 LINE L2 0 3313 3262 925 239 109 62 chr11 45588004 45588204 -105195349 + L1ME LINE L1 4564 4753 -1393 2341 107 0 0 chr11 45588204 45588503 -105195050 + AluSg SINE Alu 1 299 -11 925 239 109 62 chr11 45588503 45588963 -105194590 + L1ME LINE L1 4753 5255 -891 3314 100 11 2 chr11 45589203 45589652 -105193901 - MLT2A2 LTR ERVL 0 453 1 509 249 104 66 chr11 45590670 45591055 -105192498 - MLT1G LTR MaLR -38 557 107 308 248 57 47 chr11 45591059 45591277 -105192276 + L1ME LINE L1 5653 5885 -285 29 28 0 0 chr11 45591457 45591493 -105192060 + AT_rich Low_complexity Low_complexity 1 36 0 1178 229 66 77 chr11 45591669 45592136 -105191417 - LTR40b LTR ERVL 0 462 1 1595 166 26 9 chr11 45593118 45593481 -105190072 - L1PA16 LINE L1 0 6154 5771 3698 121 14 0 chr11 45593524 45594080 -105189473 - L1PA15 LINE L1 -5 6160 5597 419 311 30 8 chr11 45594082 45594214 -105189339 + MIR SINE MIR 20 154 -108 319 256 102 80 chr11 45594566 45594703 -105188850 + MIR3 SINE MIR 12 151 -57 440 308 100 81 chr11 45594886 45595246 -105188307 + MLT1L LTR MaLR 120 486 -129 1809 152 0 14 chr11 45595352 45595649 -105187904 - AluSx SINE Alu -19 293 1 653 299 94 5 chr11 45595659 45595883 -105187670 - MIR SINE MIR -14 248 5 7286 44 1 0 chr11 45595919 45597240 -105186313 + L1PA6 LINE L1 4865 6187 0 522 323 58 21 chr11 45598343 45598671 -105184882 + MLT1L LTR MaLR 40 379 -236 250 277 0 15 chr11 45598883 45598948 -105184605 - MIR SINE MIR -184 78 15 404 311 95 5 chr11 45599597 45599787 -105183766 - MIR SINE MIR -6 256 50 409 227 106 8 chr11 45601426 45601558 -105181995 + MER103 DNA DNA 2 146 -20 318 222 0 16 chr11 45603060 45603123 -105180430 + L2 LINE L2 3209 3270 -2 4590 91 5 11 chr11 45603149 45603796 -105179757 - L1PA8A LINE L1 -13 6118 5476 * 10122 45 0 0 chr11 45603791 45605813 -105177740 - L1PA4 LINE L1 0 6155 4135 259 91 45 0 chr11 45605967 45606011 -105177542 - Alu SINE Alu -255 46 1 530 223 58 0 chr11 45606045 45606166 -105177387 - FLAM_A SINE Alu -5 128 1 2126 144 0 6 chr11 45606436 45606749 -105176804 - AluSx SINE Alu -1 311 1 300 153 83 7 chr11 45606749 45606893 -105176660 + (TA)n Simple_repeat Simple_repeat 1 155 0 187 118 49 49 chr11 45606893 45606995 -105176558 + (TTATA)n Simple_repeat Simple_repeat 5 106 0 182 37 37 0 chr11 45607338 45607365 -105176188 + (TA)n Simple_repeat Simple_repeat 2 29 0 1974 150 0 0 chr11 45607529 45607816 -105175737 + AluJb SINE Alu 1 287 -25 262 176 24 0 chr11 45607834 45607919 -105175634 + (TA)n Simple_repeat Simple_repeat 2 88 0 728 188 18 3 chr11 45607965 45608247 -105175306 - MLT1A1 LTR MaLR 0 365 1 2589 52 0 7 chr11 45609071 45609376 -105174177 - AluY SINE Alu -8 303 1 460 227 162 58 chr11 45609683 45609837 -105173716 - MER5A DNA MER1_type -1 188 19 553 216 224 0 chr11 45609855 45610112 -105173441 + MER33 DNA MER1_type 1 363 0 2024 153 37 3 chr11 45612978 45613332 -105170221 - MER47A DNA MER2_type 0 366 1 2232 98 20 0 chr11 45613614 45613785 -105169768 - AluSp SINE Alu -11 302 121 405 0 0 0 chr11 45613785 45613830 -105169723 + (TG)n Simple_repeat Simple_repeat 2 46 0 2232 98 20 0 chr11 45613830 45613954 -105169599 - AluSp SINE Alu -192 121 1 611 214 113 13 chr11 45614247 45614406 -105169147 - AluJb SINE Alu -15 297 123 209 293 0 17 chr11 45615265 45615323 -105168230 - MIR3 SINE MIR -6 202 146 2211 136 0 3 chr11 45615682 45615991 -105167562 - AluSx SINE Alu -4 308 1 2289 87 16 13 chr11 45616426 45616736 -105166817 - AluSp SINE Alu -2 311 1 907 201 19 0 chr11 45616742 45616901 -105166652 - AluJo/FRAM SINE Alu -16 296 135 1911 173 3 0 chr11 45616902 45617202 -105166351 - AluJo SINE Alu -11 301 1 471 264 58 58 chr11 45617281 45617455 -105166098 - MER5A DNA MER1_type -1 188 15 1133 67 0 0 chr11 45617621 45617755 -105165798 - AluSc SINE Alu -17 292 159 300 27 0 0 chr11 45618516 45618553 -105165000 + (TG)n Simple_repeat Simple_repeat 2 38 0 312 228 269 29 chr11 45618553 45618724 -105164829 + L2 LINE L2 1760 1971 -1343 2040 278 95 54 chr11 45618869 45619843 -105163710 + L2 LINE L2 2014 3036 -277 2261 107 7 0 chr11 45620420 45620719 -105162834 - AluSx SINE Alu -11 301 1 288 0 0 0 chr11 45621599 45621631 -105161922 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 1049 190 63 86 chr11 45621642 45621910 -105161643 - AluJo SINE Alu -44 268 7 3297 176 129 10 chr11 45621993 45622681 -105160872 - MER21B LTR ERV1 -93 770 1 906 186 12 18 chr11 45622731 45622898 -105160655 + FRAM SINE Alu 1 166 0 1091 142 12 0 chr11 45623114 45623276 -105160277 - AluSq SINE Alu -19 294 131 2012 110 44 0 chr11 45623279 45623594 -105159959 - AluSq SINE Alu 0 327 1 388 321 58 42 chr11 45623755 45623995 -105159558 + L1ME4a LINE L1 5878 6121 0 2469 74 0 0 chr11 45624128 45624426 -105159127 - AluY SINE Alu -13 298 1 444 357 16 0 chr11 45624598 45624727 -105158826 - MIR3 SINE MIR -3 205 75 2411 131 48 10 chr11 45624973 45625726 -105157827 + L1P4 LINE L1 4887 5663 -503 28 61 0 0 chr11 45626260 45626309 -105157244 + AT_rich Low_complexity Low_complexity 1 49 0 624 142 217 0 chr11 45626851 45626971 -105156582 - MER46A DNA MER2_type -90 146 1 200 31 62 0 chr11 45627626 45627658 -105155895 + T-rich Low_complexity Low_complexity 2 35 0 2091 128 3 0 chr11 45627661 45627949 -105155604 - AluSx SINE Alu -23 289 1 356 301 59 21 chr11 45628221 45628460 -105155093 - L1ME LINE L1 -377 5744 5497 207 0 0 0 chr11 45629205 45629228 -105154325 + (TG)n Simple_repeat Simple_repeat 2 24 0 408 275 121 13 chr11 45629824 45629973 -105153580 - MIR3 SINE MIR -6 202 38 2070 113 3 0 chr11 45629993 45630301 -105153252 - AluSq SINE Alu 0 309 1 979 274 60 7 chr11 45631527 45631826 -105151727 - L2 LINE L2 -814 2500 2186 287 267 22 0 chr11 45631889 45631979 -105151574 + HAL1 LINE L1 1560 1651 -856 582 165 43 0 chr11 45632367 45632482 -105151071 + Charlie4 DNA MER1_type 1826 1945 -16 906 176 35 130 chr11 45632490 45632636 -105150917 + L1MC5 LINE L1 7330 7488 -473 1966 156 10 0 chr11 45632636 45632943 -105150610 - AluJb SINE Alu -2 310 1 906 176 35 130 chr11 45632943 45633089 -105150464 + L1MC5 LINE L1 7488 7565 -396 2091 92 0 58 chr11 45633089 45633416 -105150137 - AluSx SINE Alu -4 308 1 906 176 35 130 chr11 45633416 45633583 -105149970 + L1MC5 LINE L1 7565 7746 -215 1639 152 87 7 chr11 45633632 45633908 -105149645 + AluJo SINE Alu 1 298 -14 340 259 0 65 chr11 45633923 45634027 -105149526 + L1ME2 LINE L1 2245 2339 -3807 354 261 87 72 chr11 45634027 45634120 -105149433 - MER46C DNA MER2_type 0 338 248 1673 170 6 26 chr11 45634120 45634432 -105149121 + AluJb SINE Alu 1 306 -6 354 261 87 72 chr11 45634432 45634671 -105148882 - MER46C DNA MER2_type -90 248 1 340 259 0 65 chr11 45634671 45634705 -105148848 + L1ME2 LINE L1 2339 2374 -3772 21 0 0 0 chr11 45634959 45634980 -105148573 + AT_rich Low_complexity Low_complexity 1 21 0 41097 31 24 1 chr11 45635033 45641049 -105142504 - L1PA2 LINE L1 0 6155 1 363 274 22 74 chr11 45641197 45641332 -105142221 + L2 LINE L2 3162 3289 -24 548 291 173 25 chr11 45641347 45641670 -105141883 - L2 LINE L2 -44 3269 2899 2255 95 10 3 chr11 45642326 45642621 -105140932 + AluSc SINE Alu 1 297 -12 586 260 159 29 chr11 45642668 45643035 -105140518 + MLT1H1 LTR MaLR 59 448 -107 1429 248 75 10 chr11 45643759 45644158 -105139395 + MER70B LTR ERVL 6 430 -148 235 225 93 78 chr11 45644453 45644512 -105139041 + MLT1E1 LTR MaLR 1 58 -596 354 108 108 0 chr11 45644512 45644586 -105138967 + L1MA9 LINE L1 6230 6311 -1 235 225 93 78 chr11 45644586 45644655 -105138898 + MLT1E1 LTR MaLR 58 131 -523 * 1725 163 29 70 chr11 45644652 45645095 -105138458 + MSTB1 LTR MaLR 8 432 0 1242 207 122 70 chr11 45645095 45645592 -105137961 + MLT1E1 LTR MaLR 132 654 0 307 250 111 17 chr11 45645778 45645939 -105137614 + MIR SINE MIR 32 254 -8 2222 92 0 3 chr11 45646119 45646411 -105137142 - AluSg1 SINE Alu -18 291 1 225 284 125 46 chr11 45646884 45647212 -105136341 + L1ME2 LINE L1 2678 3031 -3115 725 218 0 0 chr11 45647217 45647350 -105136203 + FLAM_A SINE Alu 5 137 -5 385 296 92 54 chr11 45647351 45647743 -105135810 + L1ME2 LINE L1 3078 3484 -2662 1364 139 243 4 chr11 45647865 45648145 -105135408 - MER7A DNA MER2_type -1 345 1 374 282 94 0 chr11 45648165 45648335 -105135218 + L1ME2 LINE L1 5068 5253 -893 210 91 0 0 chr11 45648387 45648420 -105135133 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 1284 209 37 18 chr11 45648423 45648696 -105134857 - AluJo SINE Alu -29 283 6 446 215 0 0 chr11 45648963 45649042 -105134511 - MLT1I LTR MaLR -238 171 93 672 252 75 53 chr11 45649129 45649395 -105134158 - MLT1I LTR MaLR -39 370 99 311 302 123 36 chr11 45649503 45649967 -105133586 + L1ME2 LINE L1 5434 5948 -216 22 35 0 0 chr11 45650036 45650065 -105133488 + AT_rich Low_complexity Low_complexity 1 29 0 1802 152 14 20 chr11 45650174 45650309 -105133244 + AluJo SINE Alu 1 135 -177 1911 154 7 7 chr11 45650309 45650607 -105132946 + AluJb SINE Alu 1 298 -14 1802 152 14 20 chr11 45650607 45650768 -105132785 + AluJo SINE Alu 135 295 -17 25 0 0 0 chr11 45651590 45651615 -105131938 + AT_rich Low_complexity Low_complexity 1 25 0 1677 149 7 65 chr11 45651641 45651949 -105131604 + AluJo SINE Alu 1 290 -22 2485 73 0 6 chr11 45651949 45652262 -105131291 + AluY SINE Alu 1 311 0 318 250 173 73 chr11 45652262 45652572 -105130981 + L1ME LINE L1 5287 5625 -539 1872 171 3 3 chr11 45652733 45653032 -105130521 + AluJo SINE Alu 1 299 -13 299 318 201 0 chr11 45654424 45654603 -105128950 - L2 LINE L2 -171 3142 2928 229 132 0 0 chr11 45654625 45654663 -105128890 - MLT1A2 LTR MaLR 0 390 353 2776 223 73 19 chr11 45654680 45655432 -105128121 - MER21B LTR ERV1 -54 809 17 817 174 135 111 chr11 45655439 45655773 -105127780 - MLT1A2 LTR MaLR -32 342 1 1673 291 183 6 chr11 45655793 45656576 -105126977 - L2 LINE L2 -424 2890 1970 2539 53 0 0 chr11 45656716 45657016 -105126537 - AluY SINE Alu -11 300 1 233 246 16 0 chr11 45657616 45657677 -105125876 - L1ME LINE L1 -513 5608 5547 468 35 0 0 chr11 45659518 45659576 -105123977 + (TG)n Simple_repeat Simple_repeat 2 59 0 1287 163 26 91 chr11 45661000 45661307 -105122246 + AluJo SINE Alu 2 288 -24 509 245 161 32 chr11 45661946 45662101 -105121452 - MER5A DNA MER1_type -6 183 9 285 326 0 12 chr11 45662794 45662880 -105120673 - MIR3 SINE MIR -6 202 118 1943 141 7 3 chr11 45663313 45663648 -105119905 + AluJb SINE Alu 1 336 0 222 225 0 0 chr11 45664039 45664079 -105119474 + (CATA)n Simple_repeat Simple_repeat 3 42 0 1028 164 20 0 chr11 45664196 45664391 -105119162 + MER46A DNA MER2_type 38 236 0 224 339 153 25 chr11 45665864 45665982 -105117571 - L2 LINE L2 -4 3268 3136 326 176 185 56 chr11 45666093 45666201 -105117352 - L2 LINE L2 -20 3293 3172 222 369 0 36 chr11 45666271 45666355 -105117198 + L2 LINE L2 3168 3248 -24 23 0 0 0 chr11 45666355 45666378 -105117175 + AT_rich Low_complexity Low_complexity 1 23 0 437 271 182 82 chr11 45666559 45666976 -105116577 - MLT1L LTR MaLR -13 602 144 186 127 99 0 chr11 45667943 45668014 -105115539 + (TTATA)n Simple_repeat Simple_repeat 5 82 0 2354 81 0 0 chr11 45669419 45669714 -105113839 + AluSg SINE Alu 1 295 -15 21 36 0 0 chr11 45669716 45669744 -105113809 + AT_rich Low_complexity Low_complexity 1 28 0 2001 134 3 7 chr11 45670400 45670705 -105112848 + AluSx SINE Alu 2 305 -7 237 33 0 0 chr11 45671973 45672003 -105111550 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 180 111 0 0 chr11 45672155 45672182 -105111371 + (CATA)n Simple_repeat Simple_repeat 1 27 0 298 258 0 0 chr11 45672789 45672851 -105110702 + MIR SINE MIR 100 161 -101 547 108 48 0 chr11 45673221 45673304 -105110249 - AluJo/FRAM SINE Alu -19 293 207 828 192 7 0 chr11 45673304 45673450 -105110103 - AluJo SINE Alu -70 242 96 198 310 17 0 chr11 45673680 45673738 -105109815 + MIR SINE MIR 183 241 -21 1977 138 7 0 chr11 45674284 45674567 -105108986 - AluSx SINE Alu -27 285 1 231 0 77 0 chr11 45674577 45674616 -105108937 + T-rich Low_complexity Low_complexity 2 43 0 2213 96 4 0 chr11 45674619 45674900 -105108653 - AluSx SINE Alu -30 282 1 1318 198 67 18 chr11 45676021 45676304 -105107249 - AluJo SINE Alu -15 297 1 2284 117 0 0 chr11 45676627 45676935 -105106618 - AluSg SINE Alu -2 308 1 1859 161 43 0 chr11 45677053 45677352 -105106201 + AluJb SINE Alu 1 312 0 581 202 119 67 chr11 45679645 45679838 -105103715 - MER106B DNA MER1_type -5 1054 29 1152 128 84 75 chr11 45680317 45680544 -105103009 - MER46A DNA MER2_type -7 229 1 1804 171 0 0 chr11 45680612 45680899 -105102654 - AluJb SINE Alu -15 297 11 650 150 24 47 chr11 45681062 45681189 -105102364 + FLAM_C SINE Alu 4 127 -6 1933 141 0 3 chr11 45681257 45681570 -105101983 - AluSx SINE Alu 0 312 1 8201 111 35 11 chr11 45681658 45682927 -105100626 + HSMAR2 DNA Mariner 3 1302 0 244 302 12 35 chr11 45683658 45683744 -105099809 + L2 LINE L2 3188 3271 -1 472 258 80 12 chr11 45684114 45684277 -105099276 + MIR3 SINE MIR 32 205 -3 448 302 44 13 chr11 45684916 45685075 -105098478 + MIR SINE MIR 3 166 -96 1491 192 27 20 chr11 45685651 45685943 -105097610 + AluJo SINE Alu 1 294 -18 22 0 0 0 chr11 45685952 45685974 -105097579 + AT_rich Low_complexity Low_complexity 1 22 0 655 223 69 45 chr11 45686009 45686211 -105097342 + MIR SINE MIR 56 262 0 339 158 263 0 chr11 45687776 45687852 -105095701 - Tigger2 DNA MER2_type -11 2707 2612 588 91 0 45 chr11 45687852 45687940 -105095613 + HY4 scRNA scRNA 1 84 -9 1433 97 209 29 chr11 45687965 45688315 -105095238 - Tigger2 DNA MER2_type -90 2628 1 2739 196 48 94 chr11 45688781 45689529 -105094024 - MER21B LTR ERV1 -52 811 98 305 200 33 100 chr11 45689631 45689721 -105093832 - MER21B LTR ERV1 -758 105 22 747 167 53 0 chr11 45689737 45689885 -105093668 + MER2 DNA MER2_type 8 163 -182 488 205 28 107 chr11 45689885 45690100 -105093453 - LTR24B LTR ERV1 0 635 414 363 190 25 13 chr11 45690417 45690496 -105093057 - LTR24B LTR ERV1 -488 88 9 394 237 0 0 chr11 45690586 45690662 -105092891 + MER2 DNA MER2_type 270 345 0 2347 87 0 3 chr11 45693318 45693630 -105089923 + AluY SINE Alu 1 311 0 1691 159 7 17 chr11 45693637 45693933 -105089620 + AluJo SINE Alu 4 296 -16 189 0 0 0 chr11 45695243 45695264 -105088289 + (A)n Simple_repeat Simple_repeat 1 21 0 6042 154 41 17 chr11 45696520 45697811 -105085742 + L1MA5A LINE L1 4124 5441 -746 2218 144 87 2 chr11 45697972 45698409 -105085144 + L1MA5A LINE L1 5814 6287 -10 1367 199 62 0 chr11 45698439 45698711 -105084842 + AluJo SINE Alu 1 289 -23 212 246 14 0 chr11 45699719 45699788 -105083765 + (TA)n Simple_repeat Simple_repeat 2 71 0 247 226 202 24 chr11 45701148 45701232 -105082321 - L2 LINE L2 -16 3256 3158 2580 59 0 0 chr11 45701235 45701540 -105082013 - AluY SINE Alu -6 305 1 311 116 0 198 chr11 45701851 45701884 -105081669 + L2 LINE L2 2173 2180 -1134 2377 90 0 3 chr11 45701884 45702195 -105081358 - AluSq SINE Alu -3 310 1 311 116 0 198 chr11 45702195 45702247 -105081306 + L2 LINE L2 2180 2241 -1073 461 296 253 24 chr11 45702253 45702550 -105081003 + L2 LINE L2 2593 2957 -357 265 301 44 62 chr11 45703205 45703318 -105080235 - L2 LINE L2 -8 3264 3154 318 202 0 45 chr11 45704667 45704756 -105078797 + HsTC2 DNA Tc2 3 87 -1811 218 284 95 0 chr11 45705026 45705100 -105078453 - L2 LINE L2 -11 3302 3222 1937 152 0 3 chr11 45705334 45705631 -105077922 - AluJb SINE Alu -16 296 1 247 263 100 0 chr11 45705804 45705884 -105077669 - L1ME LINE L1 -365 5797 5710 310 290 30 19 chr11 45705900 45706034 -105077519 - L1ME LINE L1 -465 5656 5524 693 231 115 45 chr11 45706074 45706317 -105077236 - MIR SINE MIR 0 262 3 1971 152 0 34 chr11 45706418 45706741 -105076812 - AluSx SINE Alu 0 312 1 826 222 30 0 chr11 45707032 45707230 -105076323 - L1ME LINE L1 -1082 5064 4861 2377 293 62 10 chr11 45707230 45708221 -105075332 + L2 LINE L2 2266 3312 -1 29 28 0 0 chr11 45708591 45708627 -105074926 + AT_rich Low_complexity Low_complexity 1 36 0 1422 172 116 15 chr11 45708798 45709066 -105074487 + AluJo SINE Alu 9 303 -9 2355 235 90 43 chr11 45709077 45709156 -105074397 + L1ME3 LINE L1 4415 4489 -1673 1279 192 8 0 chr11 45709156 45709390 -105074163 + MER46A DNA MER2_type 1 236 0 2355 235 90 43 chr11 45709390 45709571 -105073982 + L1ME3 LINE L1 4489 4660 -1502 423 0 0 0 chr11 45709571 45709618 -105073935 + (CA)n Simple_repeat Simple_repeat 2 48 0 2355 235 90 43 chr11 45709618 45710957 -105072596 + L1ME3 LINE L1 4660 6093 -69 953 163 65 11 chr11 45711400 45711584 -105071969 - MER105 DNA DNA -9 195 2 180 250 62 47 chr11 45711719 45711783 -105071770 - L3 LINE CR1 -178 1399 1335 29 0 0 0 chr11 45712572 45712601 -105070952 + AT_rich Low_complexity Low_complexity 1 29 0 2167 95 0 54 chr11 45714143 45714458 -105069095 + AluSx SINE Alu 1 298 -14 982 189 6 0 chr11 45716280 45716444 -105067109 - FAM SINE Alu -10 165 1 232 350 29 39 chr11 45716751 45716854 -105066699 - MIR3 SINE MIR -104 104 3 182 37 37 0 chr11 45717560 45717587 -105065966 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 539 260 319 32 chr11 45717599 45718024 -105065529 - L2 LINE L2 -32 3281 2758 3169 127 21 8 chr11 45718034 45718507 -105065046 + MER1A DNA MER1_type 51 529 0 3637 275 123 19 chr11 45718510 45719840 -105063713 - L2 LINE L2 -568 2746 1278 204 292 46 69 chr11 45719840 45719970 -105063583 - L2 LINE L2 -863 2451 2325 21 0 0 0 chr11 45720184 45720205 -105063348 + AT_rich Low_complexity Low_complexity 1 21 0 2091 120 0 19 chr11 45720669 45720985 -105062568 - AluSx SINE Alu -2 310 1 2124 111 14 3 chr11 45721078 45721367 -105062186 + AluSx SINE Alu 1 292 -20 638 242 6 25 chr11 45721763 45721924 -105061629 + FRAM SINE Alu 1 156 -20 21 0 0 0 chr11 45724888 45724909 -105058644 + AT_rich Low_complexity Low_complexity 1 21 0 320 321 15 30 chr11 45725783 45725917 -105057636 - MIR SINE MIR -82 180 49 1926 155 7 0 chr11 45726737 45727034 -105056519 + AluJb SINE Alu 1 299 -13 399 41 0 0 chr11 45727292 45727341 -105056212 + (CA)n Simple_repeat Simple_repeat 2 50 0 5499 47 20 3 chr11 45727376 45728074 -105055479 - L1PA7 LINE L1 0 6154 5445 320 222 167 0 chr11 45728227 45728317 -105055236 - MIR SINE MIR -25 237 133 569 152 0 10 chr11 45728336 45728435 -105055118 + FLAM_A SINE Alu 39 136 -6 256 235 0 0 chr11 45728435 45728486 -105055067 - MIR SINE MIR -118 144 94 2299 86 0 16 chr11 45729560 45729891 -105053662 - AluSc SINE Alu 0 309 1 576 0 0 0 chr11 45730761 45730825 -105052728 + (CA)n Simple_repeat Simple_repeat 2 65 0 461 284 149 0 chr11 45731037 45731185 -105052368 + MIR SINE MIR 47 216 -46 495 0 0 0 chr11 45731670 45731725 -105051828 + (TAGA)n Simple_repeat Simple_repeat 3 57 0 258 312 0 13 chr11 45731765 45731842 -105051711 - 7SK RNA RNA -1 192 117 329 220 30 40 chr11 45731886 45731986 -105051567 - 7SK RNA RNA -85 108 10 437 342 169 25 chr11 45733321 45734002 -105049551 + L2 LINE L2 1876 2654 -660 351 309 59 20 chr11 45734135 45734287 -105049266 + MIR SINE MIR 95 252 -10 1782 128 62 4 chr11 45734764 45735037 -105048516 - AluSx SINE Alu -23 289 1 287 305 43 75 chr11 45735577 45735764 -105047789 - L3 LINE CR1 -251 1326 1146 339 321 57 21 chr11 45735848 45735988 -105047565 - L3 LINE CR1 -373 1204 1060 2268 90 0 10 chr11 45736052 45736363 -105047190 - AluSx SINE Alu -4 308 1 1887 136 7 23 chr11 45737580 45737882 -105045671 + AluSx SINE Alu 1 297 -15 2063 156 0 28 chr11 45738516 45738868 -105044685 - MER7A DNA MER2_type -5 341 2 314 250 123 17 chr11 45741218 45741312 -105042241 + L1ME4a LINE L1 5257 5340 -877 348 24 0 0 chr11 45741312 45741353 -105042200 + (CA)n Simple_repeat Simple_repeat 2 42 0 314 250 123 17 chr11 45741353 45741475 -105042078 + L1ME4a LINE L1 5340 5497 -720 444 271 136 5 chr11 45741494 45741708 -105041845 + L1ME4a LINE L1 5571 5812 -309 581 196 89 18 chr11 45741783 45741951 -105041602 + MER104 DNA MER2_type 1 180 0 623 217 25 19 chr11 45741965 45742122 -105041431 + L1ME4a LINE L1 5960 6117 -4 1104 327 96 36 chr11 45742176 45742644 -105040909 + L3 LINE CR1 10 505 -1072 699 313 48 56 chr11 45742647 45743111 -105040442 + L2 LINE L2 2751 3267 -5 536 269 110 0 chr11 45743486 45743631 -105039922 + MIR SINE MIR 6 166 -96 731 253 0 17 chr11 45743632 45743806 -105039747 + FRAM SINE Alu 1 171 -5 188 257 14 43 chr11 45743854 45743924 -105039629 + MIR SINE MIR 188 255 -7 1010 174 53 8 chr11 45744012 45744218 -105039335 + MER20 DNA MER1_type 7 219 0 872 327 107 46 chr11 45745107 45746005 -105037548 + L2 LINE L2 2048 3061 -252 209 301 146 39 chr11 45746111 45746214 -105037339 + L2 LINE L2 3193 3306 -7 282 211 187 56 chr11 45747207 45747458 -105036095 + L1ME4a LINE L1 5725 6008 -113 21 0 0 0 chr11 45748369 45748390 -105035163 + AT_rich Low_complexity Low_complexity 1 21 0 2131 92 7 11 chr11 45748811 45749094 -105034459 + AluSx SINE Alu 1 282 -30 323 44 22 0 chr11 45749094 45749139 -105034414 + (TGAA)n Simple_repeat Simple_repeat 3 48 0 1838 145 50 0 chr11 45749248 45749531 -105034022 + AluJo SINE Alu 1 297 -15 409 304 55 27 chr11 45750001 45750221 -105033332 + HAL1b LINE L1 415 640 -708 1698 144 23 7 chr11 45750332 45750653 -105032900 - MER47B DNA MER2_type -2 416 27 680 290 191 33 chr11 45751112 45751675 -105031878 + L1M4 LINE L1 2173 2646 -3500 218 31 0 31 chr11 45751675 45751707 -105031846 + (TAA)n Simple_repeat Simple_repeat 2 32 0 680 290 191 33 chr11 45751707 45752223 -105031330 + L1M4 LINE L1 2646 3419 -2727 228 318 118 22 chr11 45752337 45752692 -105030861 + L1M4 LINE L1 3514 3902 -2244 306 0 0 0 chr11 45752773 45752807 -105030746 + (CA)n Simple_repeat Simple_repeat 2 35 0 356 299 221 0 chr11 45752844 45753061 -105030492 + L1M4 LINE L1 4051 4315 -1831 635 281 85 49 chr11 45754019 45754595 -105028958 + L1MEc LINE L1 810 1406 -4990 480 229 117 127 chr11 45754637 45755179 -105028374 - MLT1H LTR MaLR 0 549 4 1817 123 34 87 chr11 45755296 45755654 -105027899 + MER44D DNA MER2_type 1 609 0 2038 156 37 0 chr11 45756267 45756620 -105026933 + MER47A DNA MER2_type 1 366 0 1034 278 92 28 chr11 45757160 45757595 -105025958 - MLT1H LTR MaLR -4 545 83 2448 25 7 0 chr11 45757696 45757982 -105025571 + AluYb8 SINE Alu 1 288 -30 678 298 63 0 chr11 45757996 45758248 -105025305 + L1MEc LINE L1 1525 1792 -4604 320 280 122 35 chr11 45758327 45758638 -105024915 + L1MEc LINE L1 1918 2255 -4141 677 259 70 57 chr11 45758689 45758793 -105024760 + L1MEc LINE L1 2384 2485 -3730 1652 203 100 44 chr11 45758793 45759271 -105024282 + MLT1D LTR MaLR 1 505 0 677 259 70 57 chr11 45759271 45759510 -105024043 + L1MEc LINE L1 2485 2737 -3478 2228 102 3 3 chr11 45759510 45759805 -105023748 - AluSg SINE Alu -15 295 1 677 259 70 57 chr11 45759805 45759915 -105023638 + L1MEc LINE L1 2737 2844 -3371 202 127 0 111 chr11 45759967 45760030 -105023523 + (TAAAAA)n Simple_repeat Simple_repeat 3 58 0 760 304 107 49 chr11 45760117 45760589 -105022964 + L1M4 LINE L1 4457 4999 -1147 2214 104 0 13 chr11 45760589 45760887 -105022666 + AluSx SINE Alu 5 298 -14 760 304 107 49 chr11 45760887 45761237 -105022316 + L1M4 LINE L1 4999 5327 -819 347 254 72 39 chr11 45761847 45762199 -105021354 + L1ME LINE L1 863 1201 -5171 2562 195 29 6 chr11 45762200 45762944 -105020609 + L1MB2 LINE L1 4812 5570 -601 3261 154 42 2 chr11 45763672 45764261 -105019292 + L1MB2 LINE L1 5551 6163 -8 575 235 118 56 chr11 45764375 45764861 -105018692 + L1ME LINE L1 1218 1652 -4732 * 2700 229 87 24 chr11 45764856 45765244 -105018309 + L1ME2 LINE L1 4752 5114 -1050 1458 178 40 0 chr11 45765244 45765491 -105018062 + AluJo SINE Alu 1 257 -55 2700 229 87 24 chr11 45765491 45766428 -105017125 + L1ME2 LINE L1 5114 6164 0 384 296 45 11 chr11 45766419 45766598 -105016955 + L1ME LINE L1 1790 1974 -4589 * 832 226 11 28 chr11 45767276 45767457 -105016096 - MER5A DNA MER1_type -11 178 1 237 207 35 17 chr11 45768335 45768393 -105015160 + L1ME LINE L1 2195 2253 -4310 1964 235 73 65 chr11 45768440 45768666 -105014887 + L1ME LINE L1 2333 2556 -3826 1444 167 78 29 chr11 45768666 45768947 -105014606 + AluJo SINE Alu 1 295 -17 1964 235 73 65 chr11 45768947 45769486 -105014067 + L1ME LINE L1 2556 3070 -3312 2268 113 0 0 chr11 45769486 45769787 -105013766 + AluSx SINE Alu 3 303 -9 1964 235 73 65 chr11 45769787 45770063 -105013490 + L1ME LINE L1 3070 3342 -3040 1134 254 51 57 chr11 45770043 45770184 -105013369 + L1P3 LINE L1 5409 5549 -623 * 2119 132 3 28 chr11 45770184 45770503 -105013050 + AluSx SINE Alu 1 311 -1 1134 254 51 57 chr11 45770503 45770748 -105012805 + L1P3 LINE L1 5549 5796 -376 254 271 93 53 chr11 45770773 45770924 -105012629 + L1MC5 LINE L1 5784 5940 -1868 2794 104 35 146 chr11 45771233 45771721 -105011832 - Tigger2 DNA MER2_type 0 2718 1 404 174 0 87 chr11 45771777 45771875 -105011678 - Tigger4(Zombi) DNA MER2_type 0 2731 248 705 48 0 0 chr11 45771875 45771959 -105011594 + THE1-int LTR MaLR 358 441 -1139 1434 171 43 16 chr11 45771959 45772216 -105011337 - AluJb SINE Alu -48 264 1 933 157 87 0 chr11 45772219 45772391 -105011162 - MER46A DNA MER2_type -49 187 1 511 243 59 136 chr11 45772432 45772953 -105010600 + L1MC5 LINE L1 6415 6938 -870 541 108 0 0 chr11 45773019 45773093 -105010460 - THE1A LTR MaLR 0 355 282 7076 83 0 0 chr11 45773093 45773987 -105009566 - THE1A-int LTR MaLR -686 894 1 2902 75 20 0 chr11 45773987 45774335 -105009218 - THE1A LTR MaLR 0 355 1 1955 226 86 50 chr11 45774365 45775219 -105008334 + L1MC5 LINE L1 7025 7908 -53 1498 156 10 80 chr11 45775219 45775520 -105008033 - AluJo SINE Alu -32 280 1 2311 97 0 3 chr11 45775550 45775849 -105007704 + AluSg SINE Alu 1 298 -12 226 287 41 16 chr11 45776095 45776217 -105007336 + L1ME3A LINE L1 1333 1457 -4939 495 264 174 16 chr11 45776226 45776484 -105007069 - LTR50 LTR ERVL -4 791 493 680 200 186 9 chr11 45776539 45776754 -105006799 - LTR50 LTR ERVL -542 253 1 255 61 0 0 chr11 45776764 45776797 -105006756 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 320 289 10 10 chr11 45776798 45776895 -105006658 - L2 LINE L2 -14 3299 3203 385 297 22 31 chr11 45777599 45777821 -105005732 + L1ME3A LINE L1 2341 2560 -3655 3796 229 54 51 chr11 45777910 45778421 -105005132 - L1M4 LINE L1 -2417 3729 3221 1964 121 26 0 chr11 45778421 45778694 -105004859 - AluSx SINE Alu -32 280 1 3796 229 54 51 chr11 45778694 45779454 -105004099 - L1M4 LINE L1 -2925 3221 2454 2051 270 103 51 chr11 45779446 45780451 -105003102 + L1ME3A LINE L1 3206 4329 -1886 * 2213 126 0 0 chr11 45780451 45780752 -105002801 + AluSx SINE Alu 1 301 -11 2051 270 103 51 chr11 45780752 45781360 -105002193 + L1ME3A LINE L1 4329 4904 -1311 2383 77 143 15 chr11 45781365 45781809 -105001744 + MER1A DNA MER1_type 1 529 0 630 291 112 46 chr11 45781918 45782550 -105001003 + L1ME3A LINE L1 5034 5721 -514 486 194 120 43 chr11 45782564 45782742 -105000811 + L1ME3A LINE L1 5796 5956 -283 977 197 33 11 chr11 45782745 45782928 -105000625 + Tigger7 DNA MER2_type 4 190 -543 512 216 10 0 chr11 45782961 45783058 -105000495 + Tigger7 DNA MER2_type 2389 2486 -1 206 207 11 35 chr11 45783295 45783350 -105000203 + (TTTA)n Simple_repeat Simple_repeat 4 58 -30 1887 141 3 43 chr11 45783350 45783654 -104999899 + AluJo SINE Alu 6 297 -15 206 207 11 35 chr11 45783654 45783685 -104999868 + (TTTA)n Simple_repeat Simple_repeat 58 88 0 1990 138 0 0 chr11 45783727 45784037 -104999516 - AluSx SINE Alu 0 310 1 1030 285 76 29 chr11 45784053 45784272 -104999281 + HAL1b LINE L1 351 558 -790 2124 142 43 56 chr11 45784272 45784667 -104998886 - MLT1B LTR MaLR 0 390 1 1030 285 76 29 chr11 45784667 45784893 -104998660 + HAL1b LINE L1 558 817 -531 26 50 0 0 chr11 45785052 45785092 -104998461 + AT_rich Low_complexity Low_complexity 1 40 0 847 298 71 29 chr11 45785095 45785283 -104998270 + L1MC/D LINE L1 4873 5052 -1268 1620 139 80 31 chr11 45785283 45785570 -104997983 - AluJo SINE Alu -11 301 1 847 298 71 29 chr11 45785570 45786051 -104997502 + L1MC/D LINE L1 5052 5568 -752 2227 114 7 0 chr11 45786051 45786349 -104997204 + AluSx SINE Alu 5 304 -8 314 186 72 31 chr11 45786434 45786531 -104997022 + L1MC4a LINE L1 6075 6175 -1633 658 237 26 42 chr11 45786552 45786742 -104996811 + MIR SINE MIR 64 250 -12 252 0 0 0 chr11 45787446 45787474 -104996079 + (A)n Simple_repeat Simple_repeat 1 28 0 325 298 26 19 chr11 45787650 45787771 -104995782 + MIR SINE MIR 4 135 -73 872 272 28 0 chr11 45787989 45788202 -104995351 - MER58A DNA MER1_type -2 222 4 249 275 101 0 chr11 45788246 45788315 -104995238 + MER5C DNA MER1_type 1 76 -248 454 319 70 13 chr11 45789162 45789319 -104994234 + L2 LINE L2 3107 3272 0 272 217 54 43 chr11 45789975 45790067 -104993486 + MIR SINE MIR 170 262 0 2325 96 0 3 chr11 45792257 45792550 -104991003 - AluSq SINE Alu -21 292 1 410 157 248 33 chr11 45792566 45792687 -104990866 - L1ME1 LINE L1 -15 6151 6005 362 176 33 44 chr11 45792830 45793012 -104990541 + CT-rich Low_complexity Low_complexity 1 180 0 4736 199 102 4 chr11 45796172 45797118 -104986435 - MER45B DNA AcHobo 0 1040 3 183 385 25 0 chr11 45797357 45797479 -104986074 + MIR SINE MIR 14 138 -124 256 260 0 0 chr11 45798155 45798205 -104985348 + L2 LINE L2 3213 3262 -10 353 325 61 65 chr11 45798230 45798461 -104985092 + MIR SINE MIR 2 231 -31 21 0 0 0 chr11 45798494 45798515 -104985038 + AT_rich Low_complexity Low_complexity 1 21 0 670 294 56 24 chr11 45798591 45798843 -104984710 + MIR SINE MIR 3 262 0 230 406 28 0 chr11 45799472 45799578 -104983975 - L2 LINE L2 -30 3242 3134 1799 137 27 38 chr11 45799817 45800109 -104983444 + AluJo SINE Alu 1 289 -23 643 151 0 0 chr11 45800194 45800287 -104983266 - AluJ SINE Alu -7 305 213 802 162 134 0 chr11 45800289 45800431 -104983122 - AluJ SINE Alu -151 161 1 2289 119 0 0 chr11 45801161 45801471 -104982082 - AluSx SINE Alu -1 311 2 595 307 9 33 chr11 45802312 45802527 -104981026 + MIR SINE MIR 53 262 0 2359 85 0 0 chr11 45802807 45803100 -104980453 - AluSg SINE Alu -17 293 1 21 0 0 0 chr11 45803108 45803129 -104980424 + AT_rich Low_complexity Low_complexity 1 21 0 328 267 199 15 chr11 45804039 45804170 -104979383 - MIR SINE MIR -33 229 75 1973 142 0 26 chr11 45804343 45804675 -104978878 - AluSx SINE Alu 0 312 1 269 324 15 52 chr11 45808757 45808893 -104974660 + MIR SINE MIR 24 154 -108 186 156 0 0 chr11 45808919 45808951 -104974602 - MIR SINE MIR -85 177 146 * 267 299 56 19 chr11 45808946 45809053 -104974500 + MIR SINE MIR 146 256 -6 1715 93 13 0 chr11 45809866 45810092 -104973461 - AluSc SINE Alu -12 297 69 401 242 52 81 chr11 45810667 45810875 -104972678 + MIR SINE MIR 23 222 -40 987 242 28 12 chr11 45811203 45811455 -104972098 - MIR SINE MIR -3 259 4 599 257 59 35 chr11 45811455 45811650 -104971903 - MIR SINE MIR -61 201 2 190 250 16 62 chr11 45812334 45812398 -104971155 - L2 LINE L2 -76 3196 3136 342 260 76 52 chr11 45812601 45812803 -104970750 - L2 LINE L2 0 3272 2746 242 281 0 0 chr11 45813379 45813443 -104970110 + MIR SINE MIR 199 262 0 1495 204 23 23 chr11 45813528 45813836 -104969717 + AluJo SINE Alu 1 308 -4 415 235 80 86 chr11 45813973 45814297 -104969256 - L1M3de LINE L1 -4704 1346 739 243 135 135 39 chr11 45814329 45814381 -104969172 + MADE1 DNA Mariner 24 80 0 671 257 145 20 chr11 45814389 45814638 -104968915 + L2 LINE L2 2170 2449 -865 2117 123 7 17 chr11 45814648 45814950 -104968603 + AluSx SINE Alu 1 299 -13 1079 264 159 17 chr11 45814953 45815496 -104968057 + L2 LINE L2 2678 3313 0 1956 98 66 21 chr11 45815669 45815838 -104967715 - AluSx SINE Alu -12 300 111 192 77 0 0 chr11 45815838 45815864 -104967689 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 1956 98 66 21 chr11 45815864 45815981 -104967572 - AluSx SINE Alu -201 111 1 2382 163 50 89 chr11 45816690 45816936 -104966617 - MLT2B1 LTR ERVL 0 520 266 2183 119 0 10 chr11 45816936 45817246 -104966307 + AluSg SINE Alu 1 307 -3 2382 163 50 89 chr11 45817246 45817538 -104966015 - MLT2B1 LTR ERVL -254 266 3 865 181 48 71 chr11 45818007 45818217 -104965336 - MER3 DNA MER1_type 0 209 5 215 323 0 0 chr11 45818339 45818401 -104965152 + L2 LINE L2 2915 2976 -296 865 261 153 54 chr11 45818506 45818615 -104964938 + LTR16C LTR ERVL 104 201 -290 2963 117 19 0 chr11 45818615 45819041 -104964512 - MER57B LTR ERV1 0 434 1 865 261 153 54 chr11 45819041 45819284 -104964269 + LTR16C LTR ERVL 201 491 0 2107 94 10 0 chr11 45819350 45819638 -104963915 + AluSg SINE Alu 1 291 -19 2066 118 3 19 chr11 45819803 45820118 -104963435 + AluSx SINE Alu 1 310 -2 567 362 32 34 chr11 45820209 45820646 -104962907 - L2 LINE L2 -556 2758 2323 795 143 93 0 chr11 45820650 45820790 -104962763 + MER5A DNA MER1_type 1 153 -36 751 219 24 76 chr11 45820800 45821010 -104962543 + MER63A DNA MER1_type 2 200 -10 183 338 13 0 chr11 45821077 45821154 -104962399 - L2 LINE L2 -1019 2295 2218 338 269 55 86 chr11 45821192 45821449 -104962104 - L2 LINE L2 -76 3196 2948 265 348 102 13 chr11 45821680 45821916 -104961637 + L2 LINE L2 2853 3109 -163 198 0 0 0 chr11 45822393 45822415 -104961138 + (CTG)n Simple_repeat Simple_repeat 3 24 0 2167 105 7 0 chr11 45822687 45822983 -104960570 - AluSx SINE Alu -14 298 1 395 311 126 0 chr11 45823018 45823153 -104960400 + L2 LINE L2 3162 3313 0 4741 194 11 6 chr11 45823322 45823687 -104959866 + L1MB3 LINE L1 5118 5479 -704 2054 122 0 0 chr11 45823687 45823983 -104959570 + AluSx SINE Alu 1 296 -16 4741 194 11 6 chr11 45823983 45824678 -104958875 + L1MB3 LINE L1 5479 6183 0 489 288 80 72 chr11 45824678 45825039 -104958514 - L2 LINE L2 -831 2483 2120 258 282 153 90 chr11 45825069 45825370 -104958183 + L2 LINE L2 2953 3272 0 428 231 110 83 chr11 45825906 45826170 -104957383 - MLT1H LTR MaLR 0 549 279 423 272 19 0 chr11 45826215 45826318 -104957235 - FLAM_A SINE Alu -1 132 28 278 253 46 11 chr11 45826449 45826536 -104957017 - MLT1H LTR MaLR -459 90 1 2178 95 0 3 chr11 45826980 45827276 -104956277 - AluSg SINE Alu -15 295 1 659 283 37 0 chr11 45827403 45827594 -104955959 - MARNA DNA Mariner -196 390 193 195 129 0 0 chr11 45828658 45828689 -104954864 + (T)n Simple_repeat Simple_repeat 1 31 0 470 291 30 8 chr11 45829109 45829243 -104954310 - MIR SINE MIR -106 156 20 232 350 52 0 chr11 45830324 45830421 -104953132 - MIR SINE MIR -64 144 43 189 315 0 19 chr11 45830494 45830548 -104953005 + L2 LINE L2 3218 3270 -2 333 246 151 48 chr11 45830610 45830736 -104952817 - L2 LINE L2 0 3313 3175 1133 244 54 48 chr11 45830951 45831245 -104952308 + MER113 DNA MER1_type? 20 320 -201 1557 194 27 0 chr11 45831245 45831539 -104952014 + AluJb SINE Alu 3 304 -8 1133 244 54 48 chr11 45831539 45831741 -104951812 + MER113 DNA MER1_type? 320 519 -2 2061 111 7 0 chr11 45832338 45832627 -104950926 + AluSp SINE Alu 3 293 -20 2447 74 0 0 chr11 45832629 45832939 -104950614 + AluY SINE Alu 1 310 -1 1014 207 60 8 chr11 45832966 45833217 -104950336 + L1MB8 LINE L1 5914 6177 -1 225 154 0 0 chr11 45833217 45833256 -104950297 + GA-rich Low_complexity Low_complexity 1 39 0 194 355 0 0 chr11 45833407 45833483 -104950070 - MIR SINE MIR -6 256 181 2380 82 77 11 chr11 45834172 45834524 -104949029 - THE1C LTR MaLR 0 375 1 498 331 34 67 chr11 45837604 45837960 -104945593 + ERVL LTR ERVL 344 687 -5077 939 160 7 0 chr11 45838372 45838522 -104945031 - L1PA15 LINE L1 -142 6023 5873 1967 106 29 26 chr11 45838528 45838692 -104944861 - Tigger1 DNA MER2_type -1234 1184 1017 2141 153 97 5 chr11 45838692 45839084 -104944469 + MSTA LTR MaLR 1 428 0 1967 106 29 26 chr11 45839084 45839231 -104944322 - Tigger1 DNA MER2_type -1401 1017 872 761 92 0 0 chr11 45839208 45839306 -104944247 - MSTA LTR MaLR -330 98 1 * 355 183 0 0 chr11 45839306 45839358 -104944195 + Tigger1 DNA MER2_type 1021 1072 -1346 5574 142 43 2 chr11 45839331 45840239 -104943314 - Tigger1 DNA MER2_type -1473 945 1 377 301 15 8 chr11 45840472 45840605 -104942948 + ERVL LTR ERVL 1579 1712 -4052 1157 298 85 4 chr11 45840684 45841163 -104942390 + ERVL LTR ERVL 1827 2390 -3035 735 185 0 15 chr11 45841257 45841387 -104942166 - MER63 DNA MER1_type -282 780 27 487 330 20 0 chr11 45841401 45841604 -104941949 + ERVL LTR ERVL 2338 2544 -3110 403 250 62 0 chr11 45842027 45842139 -104941414 + LTR67 LTR ERVL 431 549 -8 1546 36 5 21 chr11 45842271 45842485 -104941068 + L1PA3 LINE L1 5967 6155 0 21 0 0 0 chr11 45842631 45842652 -104940901 + AT_rich Low_complexity Low_complexity 1 21 0 398 331 124 36 chr11 45842652 45843184 -104940369 + L2 LINE L2 1421 1999 -1315 1314 118 94 0 chr11 45843238 45843441 -104940112 - MER30 DNA MER1_type -6 224 3 572 280 86 110 chr11 45843443 45844236 -104939317 + L2 LINE L2 2072 2845 -469 182 304 0 0 chr11 45844591 45844637 -104938916 + L2 LINE L2 3264 3309 -4 1619 213 40 47 chr11 45844670 45845140 -104938413 + MLT1C LTR MaLR 1 467 0 189 121 0 0 chr11 45845250 45845283 -104938270 + (TCTCTG)n Simple_repeat Simple_repeat 4 36 0 212 185 19 0 chr11 45845293 45845347 -104938206 + (CA)n Simple_repeat Simple_repeat 1 55 0 252 337 35 0 chr11 45845722 45845808 -104937745 + L2 LINE L2 2708 2796 -518 484 332 77 35 chr11 45845891 45846201 -104937352 + L2 LINE L2 2991 3313 0 1483 245 85 8 chr11 45846376 45846857 -104936696 - LTR33 LTR ERVL 0 521 4 1950 86 10 14 chr11 45847089 45847379 -104936174 - L1MA1 LINE L1 0 6302 6014 5967 159 16 37 chr11 45847454 45849018 -104934535 - L1MA3 LINE L1 0 6305 4801 2182 112 0 10 chr11 45849018 45849331 -104934222 - AluSx SINE Alu -2 310 1 5967 159 16 37 chr11 45849331 45849896 -104933657 - L1MA3 LINE L1 -1504 4801 4226 258 290 29 80 chr11 45852233 45852371 -104931182 - L2 LINE L2 -12 3301 3171 182 250 114 0 chr11 45852413 45852457 -104931096 + MIR3 SINE MIR 120 168 -40 2683 156 49 8 chr11 45852529 45853041 -104930512 + L1MB4 LINE L1 5640 6172 -8 409 270 85 97 chr11 45853407 45853583 -104929970 - Charlie8 DNA MER1_type -96 245 71 2227 89 0 29 chr11 45853583 45853896 -104929657 + AluSg SINE Alu 1 304 -6 409 270 85 97 chr11 45853896 45853967 -104929586 - Charlie8 DNA MER1_type -270 71 1 1663 158 0 18 chr11 45854121 45854405 -104929148 - AluJb SINE Alu -33 279 1 223 239 60 15 chr11 45854409 45854476 -104929077 - L3 LINE CR1 -180 1397 1328 1109 227 40 4 chr11 45854614 45854865 -104928688 - MIR SINE MIR 0 262 3 226 307 64 43 chr11 45855017 45855157 -104928396 + L3b LINE CR1 1317 1459 -124 1746 170 0 6 chr11 45855196 45855508 -104928045 + AluJo SINE Alu 1 310 -2 811 216 0 0 chr11 45855704 45855876 -104927677 + FRAM SINE Alu 1 172 0 345 291 8 43 chr11 45855912 45856029 -104927524 - L3 LINE CR1 -3 1574 1462 484 260 66 54 chr11 45856321 45856678 -104926875 + MLT1H LTR MaLR 100 525 -17 919 290 105 35 chr11 45856721 45857263 -104926290 + MLT1K LTR MaLR 3 582 -6 1269 68 0 0 chr11 45857275 45857457 -104926096 + L1PA3 LINE L1 5989 6170 0 26 0 0 0 chr11 45857485 45857511 -104926042 + AT_rich Low_complexity Low_complexity 1 26 0 2490 129 14 3 chr11 45857764 45858135 -104925418 + THE1C LTR MaLR 1 375 0 907 286 86 12 chr11 45858896 45859221 -104924332 + MLT1I LTR MaLR 59 407 -2 249 240 80 27 chr11 45859355 45859430 -104924123 + L2 LINE L2 3235 3313 0 231 169 0 34 chr11 45861120 45861209 -104922344 + (CGGGG)n Simple_repeat Simple_repeat 5 90 0 3470 150 37 62 chr11 45862117 45862824 -104920729 + LTR8 LTR ERV1 2 690 -1 216 356 17 0 chr11 45863554 45863669 -104919884 - L2 LINE L2 -338 2976 2860 226 343 43 14 chr11 45863936 45864076 -104919477 + L2 LINE L2 2894 3037 -235 1459 269 76 18 chr11 45864176 45864916 -104918637 + L2 LINE L2 2525 3313 0 323 242 157 56 chr11 45865220 45865356 -104918197 - MER112 DNA MER1_type -58 202 42 2156 110 3 0 chr11 45865356 45865665 -104917888 + AluSq SINE Alu 1 310 -3 323 242 157 56 chr11 45865665 45865706 -104917847 - MER112 DNA MER1_type -218 42 7 713 255 10 54 chr11 45865765 45865969 -104917584 - MIR SINE MIR -3 259 65 935 266 102 4 chr11 45866241 45866516 -104917037 - LTR33 LTR ERVL -201 320 19 522 0 0 0 chr11 45866961 45867019 -104916534 + (TG)n Simple_repeat Simple_repeat 2 59 0 180 0 0 0 chr11 45869415 45869435 -104914118 + (A)n Simple_repeat Simple_repeat 1 20 0 214 192 19 0 chr11 45870835 45870887 -104912666 + (CA)n Simple_repeat Simple_repeat 1 53 0 218 308 0 0 chr11 45871483 45871535 -104912018 + polypurine Low_complexity Low_complexity 6 57 0 219 217 43 14 chr11 45872744 45872813 -104910740 + CT-rich Low_complexity Low_complexity 2 72 0 24 32 0 0 chr11 45874406 45874437 -104909116 + AT_rich Low_complexity Low_complexity 1 31 0 27 0 0 0 chr11 45875839 45875866 -104907687 + GC_rich Low_complexity Low_complexity 1 27 0 22 0 0 0 chr11 45876096 45876118 -104907435 + GC_rich Low_complexity Low_complexity 1 22 0 207 55 36 73 chr11 45876391 45876446 -104907107 + (GGGA)n Simple_repeat Simple_repeat 1 53 0 210 91 0 0 chr11 45878481 45878514 -104905039 + (CAG)n Simple_repeat Simple_repeat 2 34 0 228 35 0 0 chr11 45879555 45879584 -104903969 + (CCTCG)n Simple_repeat Simple_repeat 2 30 0 422 250 39 55 chr11 45882156 45882284 -104901269 - MIR3 SINE MIR -5 203 78 242 281 157 16 chr11 45883288 45883409 -104900144 + MIR3 SINE MIR 55 192 -16 * 356 230 0 27 chr11 45883401 45883475 -104900078 - L2 LINE L2 0 3313 3242 473 208 8 33 chr11 45884681 45884801 -104898752 + MIR SINE MIR 105 221 -41 311 43 0 22 chr11 45884817 45884863 -104898690 + (TTA)n Simple_repeat Simple_repeat 3 47 0 207 0 0 0 chr11 45885204 45885227 -104898326 + (TTA)n Simple_repeat Simple_repeat 2 24 0 28 48 0 0 chr11 45885697 45885739 -104897814 + AT_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chr11 45885856 45885878 -104897675 + AT_rich Low_complexity Low_complexity 1 22 0 634 226 43 108 chr11 45885977 45886256 -104897297 + MIR SINE MIR 2 262 0 198 0 0 0 chr11 45886657 45886679 -104896874 + (A)n Simple_repeat Simple_repeat 1 22 0 2064 110 37 20 chr11 45886727 45887027 -104896526 - AluY SINE Alu -6 305 1 180 0 0 0 chr11 45887031 45887051 -104896502 + (T)n Simple_repeat Simple_repeat 1 20 0 21 36 0 0 chr11 45887281 45887309 -104896244 + AT_rich Low_complexity Low_complexity 1 28 0 24 67 0 0 chr11 45887836 45887881 -104895672 + AT_rich Low_complexity Low_complexity 1 45 0 204 292 0 0 chr11 45889965 45890037 -104893516 + A-rich Low_complexity Low_complexity 1 72 0 28 29 0 0 chr11 45890676 45890711 -104892842 + AT_rich Low_complexity Low_complexity 1 35 0 201 147 0 0 chr11 45890737 45890771 -104892782 + (TTTTC)n Simple_repeat Simple_repeat 2 35 0 194 62 31 0 chr11 45892054 45892086 -104891467 + (GA)n Simple_repeat Simple_repeat 2 34 0 238 250 0 44 chr11 45892192 45892260 -104891293 - MIR3 SINE MIR -4 204 140 186 71 0 0 chr11 45892261 45892289 -104891264 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 648 233 0 0 chr11 45892289 45892409 -104891144 - FLAM_C SINE Alu -22 121 2 252 238 38 86 chr11 45892411 45892516 -104891037 - MIR SINE MIR -56 152 53 1863 152 6 29 chr11 45892638 45892953 -104890600 - AluJo SINE Alu 0 312 5 210 296 42 0 chr11 45893148 45893219 -104890334 - L2 LINE L2 -11 3261 3188 220 171 0 49 chr11 45893232 45893273 -104890280 + L2 LINE L2 3263 3301 -12 191 425 20 12 chr11 45893487 45893734 -104889819 - L2 LINE L2 -342 2972 2724 1018 126 69 6 chr11 45893839 45894031 -104889522 - AluSg/x SINE Alu 0 310 122 267 163 23 35 chr11 45894134 45894220 -104889333 + (TTATA)n Simple_repeat Simple_repeat 4 88 0 1648 152 14 51 chr11 45894279 45894575 -104888978 + AluJb SINE Alu 5 289 -23 515 248 32 25 chr11 45894732 45894889 -104888664 + L1ME LINE L1 5643 5800 -321 1816 158 10 3 chr11 45896144 45896435 -104887118 + AluJb SINE Alu 1 293 -19 21 57 0 0 chr11 45896533 45896568 -104886985 + AT_rich Low_complexity Low_complexity 1 35 0 1571 196 21 3 chr11 45896568 45896854 -104886699 - AluJo SINE Alu -21 291 1 919 179 78 0 chr11 45896856 45897035 -104886518 - L1MC1 LINE L1 -5 6328 6136 451 229 144 53 chr11 45897338 45897526 -104886027 - MER102a DNA MER1_type -18 312 108 2188 112 0 3 chr11 45897534 45897828 -104885725 - AluSc SINE Alu -16 293 1 607 200 0 8 chr11 45898427 45898547 -104885006 + MIR SINE MIR 114 232 -30 342 0 0 0 chr11 45898751 45898789 -104884764 + (CA)n Simple_repeat Simple_repeat 2 39 0 575 284 0 0 chr11 45899003 45899137 -104884416 - MIR SINE MIR -48 214 81 1616 221 118 45 chr11 45899822 45900511 -104883042 - L1MC5 LINE L1 -268 7693 6955 3154 125 17 4 chr11 45900639 45901104 -104882449 - L1PA16 LINE L1 -2 6164 5694 3206 108 15 24 chr11 45901291 45901755 -104881798 - LTR14 LTR ERVK 0 548 89 2798 37 0 0 chr11 45901855 45902183 -104881370 - L1P LINE L1 -2286 3860 3533 689 165 38 15 chr11 45902186 45902319 -104881234 + MER3 DNA MER1_type 72 207 -2 251 288 104 32 chr11 45902761 45902886 -104880667 - MARNA DNA Mariner -194 392 259 266 271 84 32 chr11 45902977 45903132 -104880421 - L2 LINE L2 -2 3311 3149 247 52 86 0 chr11 45903148 45903206 -104880347 + (TA)n Simple_repeat Simple_repeat 2 64 0 463 203 154 8 chr11 45903631 45903754 -104879799 + L2 LINE L2 3173 3313 0 720 261 115 72 chr11 45903871 45904231 -104879322 - MLT1H LTR MaLR 0 549 169 2167 147 0 0 chr11 45904231 45904543 -104879010 - AluSx SINE Alu 0 312 1 720 261 115 72 chr11 45904543 45904573 -104878980 - MLT1H LTR MaLR -380 169 142 6543 30 4 4 chr11 45904673 45905406 -104878147 + L1PA5 LINE L1 5422 6154 0 418 237 0 0 chr11 45905406 45905482 -104878071 - MER3 DNA MER1_type -133 76 1 3455 94 89 61 chr11 45905749 45906083 -104877470 - MER4B LTR ERV1 0 610 250 2305 99 0 0 chr11 45906083 45906386 -104877167 - AluSc SINE Alu -6 303 1 3455 94 89 61 chr11 45906386 45906644 -104876909 - MER4B LTR ERV1 -360 250 1 1936 173 0 0 chr11 45906758 45907058 -104876495 + AluJb SINE Alu 1 300 -12 768 219 118 31 chr11 45907550 45907837 -104875716 + L1MC5 LINE L1 7603 7914 -47 1724 190 143 94 chr11 45908305 45908963 -104874590 - L1ME3 LINE L1 -21 6141 5452 21 36 0 0 chr11 45909183 45909211 -104874342 + AT_rich Low_complexity Low_complexity 1 28 0 1281 234 58 21 chr11 45909848 45910275 -104873278 - L1MC4 LINE L1 0 8042 7600 618 266 116 5 chr11 45910382 45910589 -104872964 - MIR SINE MIR -29 233 4 290 212 59 12 chr11 45910773 45910858 -104872695 + MIR SINE MIR 174 262 0 183 319 0 0 chr11 45910855 45910902 -104872651 - MIR3 SINE MIR -45 163 117 * 23 33 0 0 chr11 45911344 45911374 -104872179 + AT_rich Low_complexity Low_complexity 1 30 0 399 277 157 15 chr11 45912329 45912603 -104870950 - L1MC4 LINE L1 -10 8032 7720 1861 160 3 3 chr11 45913412 45913725 -104869828 - AluSp SINE Alu 0 313 1 21 0 0 0 chr11 45914674 45914695 -104868858 + AT_rich Low_complexity Low_complexity 1 21 0 2374 96 0 0 chr11 45914917 45915218 -104868335 + AluSx SINE Alu 1 301 -11 1438 164 211 13 chr11 45916204 45916516 -104867037 + MLT1A2 LTR MaLR 1 374 0 328 327 118 0 chr11 45916801 45916911 -104866642 - L2 LINE L2 -327 2986 2864 808 272 43 47 chr11 45916919 45917220 -104866333 + L2 LINE L2 3006 3305 -8 1661 203 0 3 chr11 45917688 45917988 -104865565 - AluJb SINE Alu -13 299 1 714 139 0 0 chr11 45917996 45918097 -104865456 - AluJb SINE Alu -181 131 31 2131 114 30 7 chr11 45918631 45918928 -104864625 - AluSx SINE Alu -8 304 1 1992 100 135 3 chr11 45919022 45919341 -104864212 - MER46B DNA MER2_type 0 236 1 216 296 37 28 chr11 45919414 45919522 -104864031 - L2 LINE L2 -320 2952 2844 1619 198 136 54 chr11 45919570 45920034 -104863519 - MLT1D LTR MaLR -3 502 1 25 31 0 0 chr11 45920045 45920077 -104863476 + AT_rich Low_complexity Low_complexity 1 32 0 1502 158 75 43 chr11 45920199 45920477 -104863076 - AluJo SINE Alu -25 287 1 1429 213 39 47 chr11 45920635 45920702 -104862851 - MLT1C LTR MaLR -7 460 394 2287 110 3 0 chr11 45920702 45921001 -104862552 + AluSq SINE Alu 1 300 -13 1429 213 39 47 chr11 45921001 45921397 -104862156 - MLT1C LTR MaLR -73 394 1 1038 277 91 13 chr11 45921402 45921785 -104861768 - LTR16A LTR ERVL -13 437 25 1542 277 11 0 chr11 45922092 45922370 -104861183 + AluJo SINE Alu 1 281 -31 381 149 14 40 chr11 45923115 45923189 -104860364 - MIR3 SINE MIR -2 206 135 23 0 0 0 chr11 45925771 45925794 -104857759 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr11 45927717 45927747 -104855806 + AT_rich Low_complexity Low_complexity 1 30 0 29 0 0 0 chr11 45930056 45930085 -104853468 + AT_rich Low_complexity Low_complexity 1 29 0 302 296 0 37 chr11 45930670 45930778 -104852775 - MLT1-int LTR MaLR -830 541 438 447 171 20 33 chr11 45931033 45931163 -104852390 - MLT1H LTR MaLR -402 147 17 272 364 20 20 chr11 45931212 45931407 -104852146 + Charlie8 DNA MER1_type 2 196 -2221 579 232 155 77 chr11 45931520 45931777 -104851776 - L2 LINE L2 -63 3250 2952 2148 111 0 10 chr11 45931777 45932074 -104851479 + AluSc SINE Alu 1 294 -15 579 232 155 77 chr11 45932074 45932204 -104851349 - L2 LINE L2 -361 2952 2833 2310 112 0 6 chr11 45932632 45932946 -104850607 + AluSq SINE Alu 1 312 -1 243 113 48 0 chr11 45933015 45933077 -104850476 + (TA)n Simple_repeat Simple_repeat 2 66 0 350 252 65 32 chr11 45933077 45933200 -104850353 + L1MC4 LINE L1 6610 6736 -1306 1239 129 0 10 chr11 45935320 45935514 -104848039 - AluSg/x SINE Alu 0 312 121 887 248 74 21 chr11 45935587 45935829 -104847724 + MIR SINE MIR 8 262 0 1997 129 13 16 chr11 45935888 45936198 -104847355 - AluSx SINE Alu -3 309 1 1747 279 103 65 chr11 45936546 45938189 -104845364 + L1MEc LINE L1 35 1740 -4656 2225 112 0 3 chr11 45938357 45938653 -104844900 + AluSx SINE Alu 1 295 -17 242 70 70 0 chr11 45938709 45938752 -104844801 + A-rich Low_complexity Low_complexity 2 47 0 575 275 98 99 chr11 45938762 45938896 -104844657 + L2 LINE L2 2620 2753 -560 1754 173 39 23 chr11 45938896 45939203 -104844350 - AluSx SINE Alu 0 312 1 575 275 98 99 chr11 45939203 45939576 -104843977 + L2 LINE L2 2753 3127 -186 773 113 0 0 chr11 45939632 45939738 -104843815 + FLAM_C SINE Alu 14 119 -24 193 372 0 11 chr11 45939738 45939832 -104843721 + L2 LINE L2 3221 3313 0 359 243 153 0 chr11 45940427 45940538 -104843015 + MIR SINE MIR 75 202 -60 194 366 73 0 chr11 45940909 45940991 -104842562 - L2 LINE L2 -213 3059 2972 21 36 0 0 chr11 45941111 45941139 -104842414 + AT_rich Low_complexity Low_complexity 1 28 0 280 240 289 10 chr11 45941722 45941826 -104841727 - MIR SINE MIR -95 167 35 197 146 0 73 chr11 45941848 45941889 -104841664 - L3 LINE CR1 -630 947 910 522 280 20 20 chr11 45942471 45942621 -104840932 - MIR3 SINE MIR -40 168 19 1708 175 11 25 chr11 45942662 45942947 -104840606 + AluJb SINE Alu 7 287 -25 249 165 24 35 chr11 45942947 45943032 -104840521 + (TTATA)n Simple_repeat Simple_repeat 4 87 0 301 272 53 18 chr11 45943639 45943753 -104839800 - MIR SINE MIR -98 164 47 2437 83 3 0 chr11 45943755 45944056 -104839497 - AluSp SINE Alu -11 302 1 22 0 0 0 chr11 45945708 45945730 -104837823 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr11 45946164 45946185 -104837368 + AT_rich Low_complexity Low_complexity 1 21 0 502 236 8 41 chr11 45946738 45946861 -104836692 - L2 LINE L2 -2 3311 3193 22 0 0 0 chr11 45947830 45947852 -104835701 + AT_rich Low_complexity Low_complexity 1 22 0 188 0 0 69 chr11 45948238 45948267 -104835286 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 370 352 57 39 chr11 45948268 45948498 -104835055 + HAL1b LINE L1 1 234 -1114 701 220 24 30 chr11 45948517 45948685 -104834868 - MIR SINE MIR -21 241 75 1108 237 118 79 chr11 45948701 45949579 -104833974 + HAL1b LINE L1 242 1154 -194 1291 135 0 0 chr11 45949728 45949936 -104833617 + L1PA13 LINE L1 5954 6161 -2 196 248 133 57 chr11 45949981 45950086 -104833467 - MIR SINE MIR -115 147 35 479 232 22 55 chr11 45950094 45950275 -104833278 - HAL1b LINE L1 -32 1316 1142 182 333 11 81 chr11 45950339 45950426 -104833127 - MIR SINE MIR -164 98 18 2095 112 3 53 chr11 45951331 45951654 -104831899 - AluSx SINE Alu -5 307 1 2499 61 0 3 chr11 45952211 45952522 -104831031 - AluY SINE Alu -1 310 1 2114 115 24 3 chr11 45952720 45953015 -104830538 - AluSx SINE Alu -11 301 1 1856 138 69 3 chr11 45953636 45953833 -104829720 - AluJb SINE Alu 0 330 105 333 0 0 0 chr11 45953833 45953870 -104829683 + (TTTG)n Simple_repeat Simple_repeat 4 40 0 1856 138 69 3 chr11 45953870 45953983 -104829570 - AluJb SINE Alu -225 105 1 349 241 278 0 chr11 45954032 45954140 -104829413 + MIR SINE MIR 29 166 -96 381 331 38 15 chr11 45954185 45954318 -104829235 - MIR SINE MIR -108 154 19 236 296 81 75 chr11 45954992 45955178 -104828375 + L2 LINE L2 3009 3195 -118 2057 272 92 55 chr11 45955203 45956003 -104827550 - L2 LINE L2 -2 3311 2542 1961 138 31 0 chr11 45956003 45956293 -104827260 + AluSq SINE Alu 1 299 -14 2057 272 92 55 chr11 45956293 45956382 -104827171 - L2 LINE L2 -771 2542 2458 254 29 29 0 chr11 45956382 45956417 -104827136 + (TG)n Simple_repeat Simple_repeat 2 37 0 2057 272 92 55 chr11 45956417 45956770 -104826783 - L2 LINE L2 -855 2458 1923 413 213 19 56 chr11 45956744 45956852 -104826701 + L2 LINE L2 3210 3313 0 * 286 259 177 44 chr11 45956863 45957021 -104826532 - L2 LINE L2 -5 3308 3130 8797 40 0 1 chr11 45957620 45959456 -104824097 - L1PA5 LINE L1 -6 6148 4307 1601 36 0 0 chr11 45959459 45959653 -104823900 + L1P LINE L1 4078 4271 -1875 41 36 0 0 chr11 45960150 45960205 -104823348 + AT_rich Low_complexity Low_complexity 1 55 0 2311 84 13 0 chr11 45960238 45960546 -104823007 - AluSx SINE Alu 0 312 1 2251 80 33 13 chr11 45962243 45962545 -104821008 + AluSg SINE Alu 1 308 -2 1658 176 0 28 chr11 45962748 45963062 -104820491 - AluJo SINE Alu 0 308 3 204 97 0 0 chr11 45963067 45963098 -104820455 + (T)n Simple_repeat Simple_repeat 1 31 0 1294 160 8 27 chr11 45964651 45964914 -104818639 - L1MB8 LINE L1 0 6178 5921 845 289 93 22 chr11 45965018 45965426 -104818127 - L2 LINE L2 -556 2758 2322 778 158 0 0 chr11 45965651 45965771 -104817782 + AluJo SINE Alu 16 135 -177 2101 93 0 7 chr11 45965771 45966041 -104817512 + AluSq SINE Alu 1 268 -45 486 277 43 7 chr11 45966079 45966220 -104817333 - L2 LINE L2 -543 2771 2626 28 0 0 0 chr11 45966622 45966650 -104816903 + AT_rich Low_complexity Low_complexity 1 28 0 369 0 0 0 chr11 45967426 45967467 -104816086 + (TG)n Simple_repeat Simple_repeat 2 42 0 2018 176 19 3 chr11 45967644 45968003 -104815550 - MLT1A1 LTR MaLR 0 365 1 188 269 84 84 chr11 45968176 45968295 -104815258 - L2 LINE L2 0 3272 3154 769 272 51 55 chr11 45968339 45968596 -104814957 + MIR SINE MIR 2 257 -5 275 162 54 27 chr11 45968673 45968747 -104814806 - MLT1L LTR MaLR -11 604 529 470 219 96 34 chr11 45968771 45968949 -104814604 - L2 LINE L2 0 3313 3125 331 257 188 0 chr11 45969315 45969459 -104814094 - MIR SINE MIR -4 258 88 788 180 0 0 chr11 45970697 45970825 -104812728 - FLAM_A SINE Alu -5 128 1 2276 119 0 0 chr11 45971261 45971573 -104811980 - AluSx SINE Alu 0 312 1 353 250 25 0 chr11 45971632 45971752 -104811801 - L1ME4a LINE L1 -11 6110 5988 24 0 0 0 chr11 45972565 45972589 -104810964 + AT_rich Low_complexity Low_complexity 1 24 0 343 314 96 19 chr11 45973303 45973459 -104810094 - MIR3 SINE MIR -10 198 31 2380 85 0 0 chr11 45974210 45974504 -104809049 - AluSx SINE Alu -18 294 1 3152 146 6 32 chr11 45974774 45975192 -104808361 - MER72 LTR ERV1 0 722 319 2540 86 21 24 chr11 45975192 45975566 -104807987 + THE1C LTR MaLR 3 375 0 3152 146 6 32 chr11 45975566 45975676 -104807877 - MER72 LTR ERV1 -403 319 208 1678 161 21 10 chr11 45975678 45975969 -104807584 - AluJo SINE Alu -16 296 3 186 43 0 0 chr11 45975983 45976006 -104807547 + (TTAA)n Simple_repeat Simple_repeat 4 26 0 653 259 8 0 chr11 45976012 45976143 -104807410 - AluJb SINE Alu -44 268 137 208 200 30 130 chr11 45976489 45976589 -104806964 + MIR SINE MIR 94 183 -79 202 350 10 10 chr11 45976600 45976697 -104806856 + MIR SINE MIR 160 256 -6 4486 163 53 21 chr11 45977966 45978898 -104804655 - L1MB5 LINE L1 -6 6168 5208 906 449 26 23 chr11 45978908 45979213 -104804340 - THE1C LTR MaLR 0 375 70 2296 56 56 0 chr11 45981008 45981293 -104802260 + AluY SINE Alu 1 301 -10 1447 87 24 5 chr11 45981427 45981633 -104801920 - L1PA11 LINE L1 -1 6173 5964 331 280 100 0 chr11 45981878 45981978 -104801575 - L2 LINE L2 0 3272 3163 486 155 71 0 chr11 45982027 45982111 -104801442 - LTR51 LTR ERV1 0 671 582 * 1585 203 51 9 chr11 45982109 45982444 -104801109 - MER65C LTR ERV1 -112 349 1 541 324 154 20 chr11 45982491 45982585 -104800968 - L2 LINE L2 -201 3071 2991 1131 201 62 83 chr11 45982585 45982958 -104800595 - MLT1A1 LTR MaLR 0 365 1 541 324 154 20 chr11 45982958 45983325 -104800228 - L2 LINE L2 -281 2991 2543 790 284 61 61 chr11 45983742 45984133 -104799420 - MLT1J LTR MaLR -120 391 1 226 187 209 44 chr11 45984686 45984777 -104798776 - HAL1 LINE L1 -20 2487 2382 28 0 0 0 chr11 45984890 45984918 -104798635 + AT_rich Low_complexity Low_complexity 1 28 0 2425 77 0 3 chr11 45984939 45985249 -104798304 - AluY SINE Alu -1 310 2 252 0 0 0 chr11 45985329 45985357 -104798196 + (TA)n Simple_repeat Simple_repeat 2 29 0 1662 149 35 28 chr11 45985357 45985645 -104797908 - AluJo SINE Alu -18 294 5 280 297 55 14 chr11 45986594 45986739 -104796814 + HAL1 LINE L1 168 318 -2189 1003 251 115 65 chr11 45987039 45987781 -104795772 + HAL1 LINE L1 884 1662 -845 790 108 36 43 chr11 45987803 45987942 -104795611 + L1MC3 LINE L1 7503 7640 -145 718 315 74 29 chr11 45987950 45988328 -104795225 - LTR16A LTR ERVL -55 395 1 2220 139 12 55 chr11 45988671 45988966 -104794587 - Tigger3(Golem) DNA MER2_type -1 3028 2753 1375 196 79 7 chr11 45988966 45989246 -104794307 + AluJo SINE Alu 1 300 -12 2220 139 12 55 chr11 45989246 45989353 -104794200 - Tigger3(Golem) DNA MER2_type -276 2753 2643 2022 138 13 0 chr11 45990464 45990762 -104792791 + AluJb SINE Alu 1 302 -10 500 169 0 22 chr11 45991378 45991467 -104792086 + FLAM_C SINE Alu 35 121 -22 252 0 0 0 chr11 45991467 45991495 -104792058 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 186 43 0 0 chr11 45993384 45993407 -104790146 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 23 54 0 0 chr11 45993534 45993571 -104789982 + AT_rich Low_complexity Low_complexity 1 37 0 27 0 0 0 chr11 45995127 45995154 -104788399 + AT_rich Low_complexity Low_complexity 1 27 0 28 0 0 0 chr11 45995264 45995292 -104788261 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr11 45996503 45996527 -104787026 + AT_rich Low_complexity Low_complexity 1 24 0 24 53 0 0 chr11 45996590 45996628 -104786925 + AT_rich Low_complexity Low_complexity 1 38 0 195 129 0 0 chr11 45997059 45997090 -104786463 + (T)n Simple_repeat Simple_repeat 1 31 0 271 138 0 35 chr11 45997739 45997797 -104785756 + L1MA7 LINE L1 6227 6282 -9 59 0 0 0 chr11 45997800 45997859 -104785694 + AT_rich Low_complexity Low_complexity 1 59 0 229 255 29 49 chr11 45999109 45999211 -104784342 + MIR SINE MIR 122 221 -41 455 296 43 0 chr11 45999267 45999382 -104784171 + MIR3 SINE MIR 81 200 -8 2235 119 0 0 chr11 45999825 46000136 -104783417 - AluSq SINE Alu -2 311 1 261 143 6 50 chr11 46000560 46000721 -104782832 - HERV17 LTR ERV1 -7761 865 712 407 236 112 0 chr11 46001225 46001314 -104782239 + MIR3 SINE MIR 84 182 -26 879 106 16 0 chr11 46002043 46002166 -104781387 - L1PB4 LINE L1 -12 6144 6020 2132 113 0 0 chr11 46002281 46002604 -104780949 + AluSx SINE Alu 1 323 0 2338 96 3 3 chr11 46002824 46003137 -104780416 + AluSp SINE Alu 1 313 0 263 247 65 21 chr11 46003309 46003402 -104780151 - L1MC4 LINE L1 -565 7477 7381 735 218 48 75 chr11 46003406 46003554 -104779999 - L1MC4 LINE L1 -734 7308 7170 2332 99 0 0 chr11 46003554 46003847 -104779706 + AluSx SINE Alu 1 293 -19 735 218 48 75 chr11 46003847 46003992 -104779561 - L1MC4 LINE L1 -872 7170 7023 26 64 0 0 chr11 46004398 46004445 -104779108 + AT_rich Low_complexity Low_complexity 1 47 0 1786 149 0 88 chr11 46004507 46004835 -104778718 - AluJb SINE Alu -12 300 2 2260 104 0 10 chr11 46005413 46005720 -104777833 + AluSx SINE Alu 1 304 -8 200 275 138 9 chr11 46006777 46006886 -104776667 - MIR SINE MIR -8 254 132 2027 128 60 37 chr11 46006943 46007295 -104776258 - THE1B LTR MaLR 0 364 5 30 45 0 0 chr11 46007320 46007364 -104776189 + AT_rich Low_complexity Low_complexity 1 44 0 536 262 78 7 chr11 46008333 46008474 -104775079 - L2 LINE L2 -2 3311 3161 2952 3 0 0 chr11 46008474 46008791 -104774762 + AluYb8 SINE Alu 1 317 -1 403 328 61 6 chr11 46009484 46009664 -104773889 - ERVL LTR ERVL -5073 691 502 228 238 48 0 chr11 46010114 46010177 -104773376 - LTR50 LTR ERVL 0 795 730 1666 179 0 62 chr11 46010846 46011018 -104772535 - AluJb SINE Alu -7 305 161 1961 138 0 20 chr11 46011018 46011322 -104772231 - AluSx SINE Alu -14 298 1 1666 179 0 62 chr11 46011322 46011474 -104772079 - AluJb SINE Alu -151 161 1 557 244 39 94 chr11 46012138 46012446 -104771107 - MER31-int LTR ERV1 -985 3951 3661 2203 234 78 73 chr11 46012567 46013157 -104770396 - MLT1H1 LTR MaLR 0 555 3 210 134 45 0 chr11 46014711 46014778 -104768775 + (TA)n Simple_repeat Simple_repeat 1 70 0 1262 249 95 2 chr11 46015600 46016206 -104767347 - L1MEc LINE L1 -3524 2691 2072 1310 246 123 54 chr11 46016212 46016964 -104766589 - L1MEc LINE L1 -4580 1816 997 2218 70 28 0 chr11 46016964 46017249 -104766304 - AluY SINE Alu -18 293 1 1310 246 123 54 chr11 46017249 46017347 -104766206 - L1MEc LINE L1 -5399 997 907 910 227 15 103 chr11 46017382 46017655 -104765898 - L1MEc LINE L1 -6112 284 36 240 306 157 16 chr11 46019134 46019255 -104764298 - MIR3 SINE MIR -56 152 15 23 54 0 0 chr11 46019419 46019456 -104764097 + AT_rich Low_complexity Low_complexity 1 37 0 497 200 0 0 chr11 46019489 46019574 -104763979 - AluSg/x SINE Alu -22 287 203 1690 95 208 206 chr11 46019574 46020142 -104763411 - LTR12 LTR ERV1 -133 581 13 1485 122 0 14 chr11 46020142 46020355 -104763198 - AluSq SINE Alu -95 218 9 500 216 93 25 chr11 46021321 46021483 -104762070 + Charlie8 DNA MER1_type 92 264 -2153 1740 168 3 26 chr11 46021570 46021874 -104761679 + AluJo SINE Alu 2 298 -14 495 237 15 17 chr11 46022189 46022349 -104761204 - L1ME3 LINE L1 -150 6020 5863 2193 120 0 7 chr11 46023806 46024106 -104759447 + AluSx SINE Alu 1 298 -14 888 141 6 55 chr11 46024106 46024269 -104759284 + AluSg/x SINE Alu 132 286 -24 1656 181 20 7 chr11 46025388 46025681 -104757872 - AluJo SINE Alu -15 297 1 29 0 0 0 chr11 46026431 46026460 -104757093 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr11 46026755 46026776 -104756777 + AT_rich Low_complexity Low_complexity 1 21 0 2142 102 0 14 chr11 46026835 46027128 -104756425 - AluSx SINE Alu -9 303 15 21 0 0 0 chr11 46027223 46027244 -104756309 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr11 46027418 46027449 -104756104 + AT_rich Low_complexity Low_complexity 1 31 0 741 277 129 64 chr11 46027706 46028265 -104755288 + MLT1G1 LTR MaLR 1 595 0 781 265 57 39 chr11 46028329 46028854 -104754699 + L1ME LINE L1 5254 5793 -369 902 205 0 6 chr11 46028861 46029022 -104754531 + Tigger7 DNA MER2_type 1 160 -545 476 144 100 0 chr11 46029054 46029144 -104754409 + Tigger7 DNA MER2_type 2393 2491 0 286 294 98 0 chr11 46029548 46029650 -104753903 + L1ME4a LINE L1 5506 5617 -504 * 1652 156 81 53 chr11 46029642 46029687 -104753866 + L1ME1 LINE L1 4334 4376 -1770 204 40 0 0 chr11 46029687 46029712 -104753841 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 1753 150 11 4 chr11 46029715 46029988 -104753565 - AluSx SINE Alu -37 275 1 1652 156 81 53 chr11 46029988 46030373 -104753180 + L1ME1 LINE L1 4377 4780 -1366 4216 127 64 101 chr11 46030432 46031335 -104752218 - MER21A LTR ERV1 -28 903 34 774 223 17 6 chr11 46031335 46031510 -104752043 + L1ME1 LINE L1 4917 5093 -1053 44794 41 4 2 chr11 46031511 46037652 -104745901 - L1PA4 LINE L1 0 6155 1 1054 156 45 16 chr11 46037660 46037903 -104745650 + L1ME1 LINE L1 5081 5330 -816 2175 211 31 39 chr11 46037910 46038454 -104745099 + LTR55 LTR ERV 3 542 -6 2324 183 103 100 chr11 46038460 46038953 -104744600 + L1ME1 LINE L1 5330 5827 -339 2022 151 0 0 chr11 46038953 46039252 -104744301 + AluSx SINE Alu 1 299 -13 2324 183 103 100 chr11 46039252 46039495 -104744058 + L1ME1 LINE L1 5827 6068 -98 832 156 15 7 chr11 46039642 46039777 -104743776 + BC200 scRNA scRNA 2 137 -63 569 226 116 6 chr11 46039779 46039960 -104743593 + L1ME4a LINE L1 5661 5861 -260 917 185 0 73 chr11 46040164 46040310 -104743243 + FRAM SINE Alu 1 133 -169 1752 141 0 22 chr11 46040310 46040488 -104743065 - AluSx SINE Alu -13 299 127 369 0 0 0 chr11 46040488 46040529 -104743024 + (TG)n Simple_repeat Simple_repeat 2 42 0 1752 141 0 22 chr11 46040529 46040620 -104742933 - AluSx SINE Alu -185 127 36 917 185 0 73 chr11 46040620 46040651 -104742902 + FRAM SINE Alu 133 165 -1 1958 115 3 61 chr11 46041197 46041510 -104742043 - AluSx SINE Alu -17 295 1 794 192 23 0 chr11 46041511 46041641 -104741912 - AluJo SINE Alu -178 134 2 5064 140 20 24 chr11 46041779 46041957 -104741596 - LTR39 LTR ERV1 0 783 606 2089 103 43 17 chr11 46041957 46042259 -104741294 - AluSg SINE Alu 0 310 1 5064 140 20 24 chr11 46042259 46042866 -104740687 - LTR39 LTR ERV1 -177 606 1 1723 160 0 0 chr11 46043365 46043627 -104739926 - AluSx SINE Alu -48 264 3 259 263 163 0 chr11 46043728 46043808 -104739745 - MIR SINE MIR -91 171 79 246 128 0 0 chr11 46043863 46043902 -104739651 + (CA)n Simple_repeat Simple_repeat 2 40 0 575 281 33 38 chr11 46044073 46044208 -104739345 - MIR SINE MIR -31 231 96 2721 205 120 7 chr11 46044208 46044793 -104738760 + MLT1E1 LTR MaLR 4 654 0 575 281 33 38 chr11 46044793 46044867 -104738686 - MIR SINE MIR -166 96 23 256 24 49 0 chr11 46045022 46045063 -104738490 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 12640 32 1 0 chr11 46045063 46047228 -104736325 - L1PA3 LINE L1 -13 6142 3973 8580 31 0 1 chr11 46047228 46048257 -104735296 + L1PA3 LINE L1 2941 3968 -2178 2267 107 0 7 chr11 46049611 46049910 -104733643 - AluSq SINE Alu -16 297 1 231 162 15 73 chr11 46049929 46049997 -104733556 - L1MCa LINE L1 -4361 2065 2002 29 60 0 0 chr11 46050330 46050380 -104733173 + AT_rich Low_complexity Low_complexity 1 50 0 254 200 94 133 chr11 46050697 46050877 -104732676 + L1MC4 LINE L1 5761 5933 -1875 2269 192 38 63 chr11 46051739 46051841 -104731712 + L1MC4 LINE L1 6950 7053 -989 2043 120 20 0 chr11 46051841 46052133 -104731420 + AluSx SINE Alu 1 298 -14 2269 192 38 63 chr11 46052133 46052734 -104730819 + L1MC4 LINE L1 7053 7788 -254 1161 146 25 106 chr11 46052771 46052857 -104730696 - Charlie1 DNA MER1_type 0 2761 2670 2676 65 3 20 chr11 46052857 46053198 -104730355 - L1PA7 LINE L1 0 6154 5820 1161 146 25 106 chr11 46053198 46053432 -104730121 - Charlie1 DNA MER1_type -91 2670 2467 1860 199 39 67 chr11 46053434 46053744 -104729809 - LTR2 LTR ERV1 0 449 155 414 0 0 0 chr11 46053744 46053790 -104729763 + (TTA)n Simple_repeat Simple_repeat 2 47 0 1860 199 39 67 chr11 46053790 46053941 -104729612 - LTR2 LTR ERV1 -294 155 1 2218 208 20 12 chr11 46053941 46054649 -104728904 - HERVE LTR ERV1 -2 7811 7020 1167 191 10 10 chr11 46054737 46054941 -104728612 - HERVE LTR ERV1 -2131 6295 6092 3663 190 69 13 chr11 46054965 46055732 -104727821 - Charlie1 DNA MER1_type -299 2462 1653 1234 142 9 32 chr11 46055886 46056104 -104727449 + AluSg SINE Alu 3 215 -95 1680 11 0 0 chr11 46056313 46056495 -104727058 - AluYa5 SINE Alu -8 303 122 590 347 60 13 chr11 46056755 46057055 -104726498 - L2 LINE L2 -382 2932 2619 785 310 40 40 chr11 46057154 46057525 -104726028 - L2 LINE L2 -2810 504 134 2215 108 0 3 chr11 46059171 46059477 -104724076 - AluSx SINE Alu -7 305 1 832 129 17 0 chr11 46063148 46063264 -104720289 + FLAM_C SINE Alu 1 118 -15 22 80 0 0 chr11 46063264 46063314 -104720239 + AT_rich Low_complexity Low_complexity 1 50 0 231 36 0 0 chr11 46063794 46063822 -104719731 + (TG)n Simple_repeat Simple_repeat 2 29 0 234 394 0 0 chr11 46064986 46065057 -104718496 + L2 LINE L2 3148 3218 -54 185 337 68 68 chr11 46065092 46065581 -104717972 + L2 LINE L2 2184 2672 -642 569 185 59 44 chr11 46065658 46065793 -104717760 - L2 LINE L2 -14 3299 3163 974 273 106 35 chr11 46065822 46066277 -104717276 - L2 LINE L2 -598 2716 2230 448 245 142 13 chr11 46066305 46066460 -104717093 - MIR SINE MIR 0 262 88 2228 81 0 7 chr11 46066575 46066883 -104716670 + AluSg SINE Alu 1 306 0 23 33 0 0 chr11 46067478 46067508 -104716045 + AT_rich Low_complexity Low_complexity 1 30 0 1196 108 18 0 chr11 46067930 46068097 -104715456 - L1PA15 LINE L1 -4 6161 5992 1697 123 7 60 chr11 46068484 46068784 -104714769 - AluSx SINE Alu -28 284 1 260 261 223 0 chr11 46068856 46068986 -104714567 - L1ME4a LINE L1 -83 6038 5880 2607 144 55 0 chr11 46069358 46069762 -104713791 - MSTB LTR MaLR 0 426 1 342 80 0 0 chr11 46070115 46070165 -104713388 + (GA)n Simple_repeat Simple_repeat 1 50 0 405 209 22 0 chr11 46070764 46070855 -104712698 - MIR SINE MIR -120 142 50 1592 196 0 0 chr11 46070855 46071149 -104712404 - AluJo SINE Alu 0 305 12 367 344 43 13 chr11 46071175 46071589 -104711964 + LTR16B LTR ERVL 8 463 -1 4665 82 39 46 chr11 46071782 46071919 -104711634 + MER4A LTR ERV1 1 138 -526 2372 92 0 0 chr11 46071919 46072244 -104711309 + AluSx SINE Alu 1 325 0 4665 82 39 46 chr11 46072244 46072772 -104710781 + MER4A LTR ERV1 138 664 0 230 306 35 12 chr11 46072880 46072965 -104710588 + MLT1J2 LTR MaLR 2 88 -362 361 224 50 60 chr11 46073062 46073230 -104710323 + MLT1J LTR MaLR 232 460 -51 2021 145 10 0 chr11 46074108 46074405 -104709148 + AluSx SINE Alu 1 300 -12 1910 139 7 20 chr11 46074451 46074737 -104708816 - L1PA15 LINE L1 0 6165 5882 2033 181 108 26 chr11 46074737 46075190 -104708363 + LTR2B LTR ERV1 1 490 0 1910 139 7 20 chr11 46075190 46075206 -104708347 - L1PA15 LINE L1 -283 5882 5867 1036 100 31 0 chr11 46075448 46075608 -104707945 + MER41B LTR ERV1 1 165 -470 202 211 0 0 chr11 46076277 46076315 -104707238 + (CA)n Simple_repeat Simple_repeat 2 39 0 228 211 379 0 chr11 46078487 46078582 -104704971 - MIR SINE MIR -14 248 118 262 314 47 23 chr11 46079101 46079187 -104704366 - MIR SINE MIR -61 147 60 2094 138 0 10 chr11 46079354 46079666 -104703887 + AluSx SINE Alu 1 309 -3 490 209 129 19 chr11 46079861 46080180 -104703373 - MLT1J2 LTR MaLR 0 450 37 2333 101 0 7 chr11 46081430 46081737 -104701816 + AluSx SINE Alu 5 309 -3 909 185 48 16 chr11 46083378 46083567 -104699986 - MER3 DNA MER1_type -8 201 7 640 262 50 45 chr11 46083919 46084140 -104699413 + MIR SINE MIR 20 241 -21 189 250 228 52 chr11 46086890 46087026 -104696527 + L2 LINE L2 3152 3311 -2 265 234 153 18 chr11 46087108 46087219 -104696334 - L1ME4a LINE L1 -216 5905 5780 250 297 31 0 chr11 46087233 46087297 -104696256 - L2 LINE L2 -13 3300 3235 686 253 91 78 chr11 46087373 46087648 -104695905 - L1ME4a LINE L1 -430 5691 5408 2402 97 0 6 chr11 46087648 46087959 -104695594 - AluSx SINE Alu -3 309 1 686 253 91 78 chr11 46087959 46088078 -104695475 - L1ME4a LINE L1 -713 5408 5292 324 290 103 58 chr11 46088091 46088401 -104695152 - L1ME4a LINE L1 -885 5261 4938 399 282 88 37 chr11 46088487 46088703 -104694850 - MIR SINE MIR -33 229 3 600 267 81 61 chr11 46088785 46089081 -104694472 - MER102b DNA MER1_type -24 317 16 226 284 80 23 chr11 46089466 46089554 -104693999 + L2 LINE L2 3134 3226 -46 1802 147 87 82 chr11 46090829 46090963 -104692590 - Charlie1a DNA MER1_type -1340 1421 1289 2417 95 0 0 chr11 46090963 46091269 -104692284 + AluSg SINE Alu 1 306 -4 1802 147 87 82 chr11 46091269 46091596 -104691957 - Charlie1a DNA MER1_type -1472 1289 958 476 171 34 0 chr11 46094250 46094338 -104689215 - Charlie1a DNA MER1_type -481 974 884 1190 117 50 54 chr11 46094339 46094561 -104688992 + AluJo SINE Alu 86 306 -6 1190 177 13 13 chr11 46094565 46094791 -104688762 - Charlie1a DNA MER1_type -562 893 668 3398 58 21 12 chr11 46094791 46095184 -104688369 + MLT2A1 LTR ERVL 1 400 -44 288 0 0 0 chr11 46095184 46095216 -104688337 + (TG)n Simple_repeat Simple_repeat 2 33 0 3398 58 21 12 chr11 46095216 46095254 -104688299 + MLT2A1 LTR ERVL 400 436 -8 2851 214 76 20 chr11 46095250 46095891 -104687662 - Charlie1a DNA MER1_type -777 678 2 * 2460 126 25 3 chr11 46095918 46096274 -104687279 - THE1B LTR MaLR 0 364 1 258 143 32 48 chr11 46096578 46096641 -104686912 - L1MB1 LINE L1 -8 6181 6120 577 203 15 30 chr11 46097559 46097692 -104685861 + FLAM_A SINE Alu 9 139 -3 708 186 0 0 chr11 46097810 46097912 -104685641 - FLAM_C SINE Alu -39 104 3 1218 193 28 0 chr11 46098173 46098386 -104685167 + MER20 DNA MER1_type 1 219 0 182 239 87 0 chr11 46099577 46099623 -104683930 - L2 LINE L2 -22 3250 3201 204 97 0 0 chr11 46100095 46100126 -104683427 + (TAA)n Simple_repeat Simple_repeat 2 32 0 540 295 76 31 chr11 46100131 46100355 -104683198 - MIR SINE MIR -6 256 23 1187 165 128 77 chr11 46100449 46100687 -104682866 - MER2 DNA MER2_type 0 345 84 2451 78 0 0 chr11 46100687 46100980 -104682573 - AluSc SINE Alu -16 293 1 1187 165 128 77 chr11 46100980 46101068 -104682485 - MER2 DNA MER2_type -261 84 2 318 255 78 0 chr11 46101521 46101623 -104681930 + L2 LINE L2 2909 3018 -254 506 254 87 0 chr11 46102124 46102241 -104681312 + MIR SINE MIR 78 210 -52 2126 114 13 0 chr11 46102241 46102539 -104681014 + AluSq SINE Alu 3 304 -9 506 254 87 0 chr11 46102539 46102559 -104680994 + MIR SINE MIR 210 227 -35 562 288 28 17 chr11 46102685 46102862 -104680691 - MARNA DNA Mariner -123 463 285 309 269 199 7 chr11 46102908 46103049 -104680504 - MARNA DNA Mariner -411 175 8 1839 129 7 40 chr11 46103161 46103464 -104680089 + AluJb SINE Alu 1 293 -19 2314 94 0 28 chr11 46103468 46103786 -104679767 + AluY SINE Alu 2 310 -1 1462 284 0 106 chr11 46103949 46104280 -104679273 + AluSq SINE Alu 1 296 -7 192 224 86 17 chr11 46104280 46104338 -104679215 + MIR SINE MIR 101 162 -100 2775 118 15 0 chr11 46104478 46104868 -104678685 - L1PA13 LINE L1 -5 6158 5763 218 333 72 110 chr11 46105476 46105921 -104677632 + L2 LINE L2 2837 3264 -8 1814 170 0 13 chr11 46106537 46106837 -104676716 + AluJo SINE Alu 1 296 -16 180 0 0 0 chr11 46107197 46107217 -104676336 + (A)n Simple_repeat Simple_repeat 1 20 0 235 278 175 10 chr11 46109407 46109504 -104674049 - MER5A DNA MER1_type -22 167 55 398 243 9 37 chr11 46109851 46109958 -104673595 - MER5A DNA MER1_type -43 146 43 346 207 118 59 chr11 46110184 46110319 -104673234 + MER5A DNA MER1_type 47 189 0 * 413 264 69 23 chr11 46110319 46110489 -104673064 + MIR SINE MIR 17 194 -68 410 239 232 2 chr11 46111305 46111480 -104672073 + MIR SINE MIR 37 250 -12 213 159 0 68 chr11 46112086 46112130 -104671423 - MER5A DNA MER1_type -114 75 35 * 251 186 34 17 chr11 46112092 46112151 -104671402 + MER5A DNA MER1_type 129 188 -1 653 221 9 0 chr11 46112161 46112274 -104671279 + MER81 DNA DNA 1 114 0 564 256 80 28 chr11 46112422 46112598 -104670955 + LTR41 LTR ERVL 3 187 -586 285 294 12 0 chr11 46112672 46112757 -104670796 + ERVL LTR ERVL 549 634 -5130 2223 313 65 56 chr11 46112800 46113940 -104669613 + ERVL LTR ERVL 753 1910 -3854 2084 81 59 0 chr11 46113940 46114213 -104669340 - AluY SINE Alu -22 289 1 2223 313 65 56 chr11 46114213 46114478 -104669075 + ERVL LTR ERVL 1910 2171 -3593 1605 121 13 4 chr11 46114480 46114719 -104668834 - Tigger5 DNA MER2_type -2 2321 2081 540 172 43 0 chr11 46114711 46114804 -104668749 - Tigger5 DNA MER2_type -2225 98 2 * 1647 244 21 33 chr11 46114804 46115234 -104668319 + ERVL LTR ERVL 2169 2593 -3171 2387 85 0 7 chr11 46115261 46115566 -104667987 + AluY SINE Alu 1 303 -8 1243 99 6 0 chr11 46115566 46115727 -104667826 + AluSg/x SINE Alu 134 295 -17 560 325 57 0 chr11 46115727 46115955 -104667598 + ERVL LTR ERVL 2615 2855 -2909 2564 262 87 14 chr11 46115984 46116720 -104666833 + ERVL LTR ERVL 4142 4931 -833 387 299 43 52 chr11 46116716 46116927 -104666626 + ERVL LTR ERVL 5101 5309 -455 * 572 221 101 20 chr11 46117337 46117486 -104666067 + LTR41 LTR ERVL 7 167 -606 186 43 0 0 chr11 46117542 46117565 -104665988 + (TC)n Simple_repeat Simple_repeat 2 24 0 1629 100 9 0 chr11 46117565 46117775 -104665778 - AluSg/x SINE Alu -32 280 69 1625 221 68 25 chr11 46117817 46118260 -104665293 + MLT1C LTR MaLR 6 467 0 602 240 19 114 chr11 46118334 46118518 -104665035 + LTR41 LTR ERVL 480 680 -93 3100 116 33 2 chr11 46118518 46118967 -104664586 + MER4C LTR ERV1 2 464 -1 602 240 19 114 chr11 46118967 46119043 -104664510 + LTR41 LTR ERVL 680 707 -66 1970 142 3 37 chr11 46119043 46119366 -104664187 - AluSx SINE Alu 0 312 1 602 240 19 114 chr11 46119366 46119421 -104664132 + LTR41 LTR ERVL 707 766 -7 293 318 39 8 chr11 46119632 46119761 -104663792 + MER5A DNA MER1_type 1 133 -56 * 329 192 42 108 chr11 46119665 46119763 -104663790 - MER5A DNA MER1_type -22 167 77 1702 91 141 8 chr11 46119763 46120026 -104663527 - AluSx SINE Alu -13 299 2 329 192 42 108 chr11 46120026 46120047 -104663506 - MER5A DNA MER1_type -112 77 56 328 218 24 147 chr11 46120884 46120975 -104662578 - MIR SINE MIR 0 262 200 2982 6 0 0 chr11 46120975 46121293 -104662260 - AluYb8 SINE Alu 0 318 1 328 218 24 147 chr11 46121293 46121371 -104662182 - MIR SINE MIR -62 200 114 241 299 10 72 chr11 46121651 46121748 -104661805 + MIR SINE MIR 26 116 -146 501 329 15 0 chr11 46121778 46121915 -104661638 - L2 LINE L2 0 3272 3134 1012 232 99 81 chr11 46122069 46122414 -104661139 - MLT1H LTR MaLR -198 351 1 291 105 0 0 chr11 46122538 46122576 -104660977 + U2 snRNA snRNA 1 38 -150 2095 104 10 20 chr11 46123048 46123345 -104660208 - AluSq SINE Alu -17 296 3 384 321 150 47 chr11 46123668 46124008 -104659545 + L1MEd LINE L1 2 376 -5743 232 189 11 11 chr11 46124013 46124103 -104659450 + A-rich Low_complexity Low_complexity 1 90 0 186 43 0 0 chr11 46124242 46124265 -104659288 + (TAAA)n Simple_repeat Simple_repeat 4 26 0 419 289 99 41 chr11 46124297 46124691 -104658862 + L1MEd LINE L1 544 960 -5159 2038 155 0 0 chr11 46125116 46125420 -104658133 - AluJb SINE Alu -8 304 1 473 264 51 71 chr11 46125470 46125905 -104657648 + L1MCc LINE L1 1088 1681 -4991 1762 118 4 4 chr11 46125905 46126151 -104657402 - AluSx SINE Alu -25 287 42 473 264 51 71 chr11 46126151 46126250 -104657303 + L1MCc LINE L1 1681 1780 -4892 313 292 0 0 chr11 46126433 46126546 -104657007 + C-rich Low_complexity Low_complexity 1 113 0 2971 152 121 38 chr11 46126960 46127637 -104655916 + L1MC2 LINE L1 5612 6344 0 494 257 94 103 chr11 46128162 46128309 -104655244 + L1MEd LINE L1 561 708 -5423 1889 153 3 3 chr11 46128309 46128596 -104654957 + AluJo SINE Alu 1 287 -25 494 257 94 103 chr11 46128596 46128856 -104654697 + L1MEd LINE L1 708 969 -5162 1919 141 0 11 chr11 46128856 46129140 -104654413 - AluJo SINE Alu -31 281 1 494 257 94 103 chr11 46129140 46129316 -104654237 + L1MEd LINE L1 969 1034 -5097 2113 108 13 16 chr11 46129316 46129623 -104653930 + AluSx SINE Alu 1 306 -6 494 257 94 103 chr11 46129623 46129903 -104653650 + L1MEd LINE L1 1034 1315 -4816 348 240 42 21 chr11 46129914 46130010 -104653543 - HsTC2 DNA Tc2 -2 1896 1799 2137 71 10 51 chr11 46130146 46130492 -104653061 + AluSx SINE Alu 1 334 0 271 277 76 28 chr11 46130752 46130966 -104652587 + L1M1 LINE L1 3492 3719 -3846 487 265 93 29 chr11 46130979 46131258 -104652295 + L1M1 LINE L1 3751 4047 -3518 680 131 0 0 chr11 46131291 46131390 -104652163 + AluJ/FLAM SINE Alu 2 100 -212 667 197 23 0 chr11 46131391 46131523 -104652030 + AluJo/FRAM SINE Alu 165 299 -13 2488 69 3 3 chr11 46131571 46131877 -104651676 + AluSg SINE Alu 1 306 -4 1372 164 73 31 chr11 46131918 46132205 -104651348 + AluJo SINE Alu 1 299 -13 1603 198 86 68 chr11 46132235 46132724 -104650829 - MLT1D LTR MaLR -7 498 1 403 221 88 15 chr11 46132737 46132873 -104650680 - MIR SINE MIR -27 235 90 2103 222 100 19 chr11 46132937 46133558 -104649995 - L1MC4 LINE L1 0 8042 7372 888 266 150 27 chr11 46133821 46134407 -104649146 + L1M1 LINE L1 4543 5200 -2365 502 178 9 19 chr11 46134471 46134578 -104648975 - AluSc SINE Alu 0 309 204 288 0 0 0 chr11 46134749 46134781 -104648772 + (CA)n Simple_repeat Simple_repeat 2 33 0 2007 149 3 0 chr11 46134915 46135204 -104648349 - AluSx SINE Alu -17 295 6 1366 142 32 5 chr11 46135491 46135709 -104647844 + AluJb SINE Alu 84 307 -5 1004 243 149 19 chr11 46136493 46136868 -104646685 - MLT1L LTR MaLR -55 560 137 11922 133 27 30 chr11 46137434 46137977 -104645576 + L1MA1 LINE L1 3018 3561 -2741 2722 17 0 0 chr11 46137977 46138270 -104645283 + AluYa5 SINE Alu 1 293 -18 11922 133 27 30 chr11 46138270 46138542 -104645011 + L1MA1 LINE L1 3561 3832 -2470 1494 97 31 18 chr11 46138542 46138769 -104644784 + MER30 DNA MER1_type 1 230 0 11922 133 27 30 chr11 46138769 46141249 -104642304 + L1MA1 LINE L1 3832 6302 0 30 0 0 0 chr11 46141249 46141279 -104642274 + AT_rich Low_complexity Low_complexity 1 30 0 732 294 47 13 chr11 46141279 46141514 -104642039 + LTR16C LTR ERVL 107 349 -142 1245 67 51 6 chr11 46141514 46141692 -104641861 - L1M1 LINE L1 -822 5482 5297 555 178 136 0 chr11 46141698 46141816 -104641737 + LTR16C LTR ERVL 358 491 0 599 324 89 34 chr11 46143187 46143780 -104639773 + L2 LINE L2 2340 2965 -349 762 265 60 20 chr11 46143834 46144083 -104639470 + MIR SINE MIR 4 262 0 263 352 11 0 chr11 46144100 46144188 -104639365 + L2 LINE L2 2991 3079 -193 6382 99 18 3 chr11 46144276 46145182 -104638371 - L1PA8 LINE L1 0 6172 5254 300 321 12 0 chr11 46145188 46145272 -104638281 + L2 LINE L2 3175 3259 -13 2403 89 17 14 chr11 46145277 46145624 -104637929 + L1PA13 LINE L1 5810 6157 -6 204 40 0 0 chr11 46145774 46145799 -104637754 + (GAA)n Simple_repeat Simple_repeat 2 26 0 2197 117 3 0 chr11 46145883 46146174 -104637379 - AluSq SINE Alu -21 292 1 1313 157 0 48 chr11 46146349 46146578 -104636975 - AluSx SINE Alu -94 218 1 1677 171 45 0 chr11 46146766 46147052 -104636501 - AluJo SINE Alu -13 299 1 398 250 85 64 chr11 46147166 46147354 -104636199 + MIR SINE MIR 20 211 -51 307 248 128 34 chr11 46148333 46148450 -104635103 + MIR3 SINE MIR 74 201 -7 21 36 0 0 chr11 46148925 46148953 -104634600 + AT_rich Low_complexity Low_complexity 1 28 0 256 301 98 14 chr11 46150028 46150171 -104633382 + Charlie8 DNA MER1_type 3 157 -2260 262 145 129 16 chr11 46150254 46150316 -104633237 + Charlie8 DNA MER1_type 1360 1428 -989 512 202 118 0 chr11 46150645 46150764 -104632789 - MIR SINE MIR -107 155 23 834 147 0 22 chr11 46150929 46151065 -104632488 + FLAM_A SINE Alu 1 133 0 411 21 0 0 chr11 46151065 46151113 -104632440 + (TA)n Simple_repeat Simple_repeat 2 49 0 1113 237 142 39 chr11 46151136 46151622 -104631931 - L2 LINE L2 -1 3312 2720 2043 126 0 7 chr11 46151622 46151954 -104631599 + AluSx SINE Alu 1 330 0 1113 237 142 39 chr11 46151954 46152262 -104631291 - L2 LINE L2 -593 2720 2445 236 263 213 12 chr11 46152603 46152763 -104630790 - MIR SINE MIR -70 192 1 2132 132 0 0 chr11 46153245 46153541 -104630012 - AluSx SINE Alu -16 296 1 200 308 155 25 chr11 46153685 46153988 -104629565 + L2 LINE L2 2703 3039 -274 183 225 157 11 chr11 46154671 46154760 -104628793 - MIR SINE MIR 0 262 161 26 30 0 0 chr11 46155621 46155654 -104627899 + AT_rich Low_complexity Low_complexity 1 33 0 182 149 0 85 chr11 46155922 46155969 -104627584 + MIR SINE MIR 218 260 -2 320 272 142 12 chr11 46157635 46157804 -104625749 - MIR SINE MIR -37 225 35 248 245 92 10 chr11 46161199 46161297 -104622256 + MIR SINE MIR 38 143 -65 284 320 75 41 chr11 46162147 46162238 -104621315 - L1ME4a LINE L1 -56 6065 5979 1757 135 14 7 chr11 46162238 46162519 -104621034 - AluJb SINE Alu -29 283 1 284 320 75 41 chr11 46162519 46162746 -104620807 - L1ME4a LINE L1 -142 5979 5736 417 217 35 56 chr11 46162886 46163029 -104620524 - MIR SINE MIR -10 252 113 690 215 17 41 chr11 46163059 46163231 -104620322 - L1ME4a LINE L1 -430 5691 5524 307 188 156 5 chr11 46164485 46164581 -104618972 + MIR SINE MIR 41 145 -73 1764 161 3 58 chr11 46164681 46164866 -104618687 - AluJo SINE Alu -1 311 117 180 0 0 0 chr11 46164866 46164886 -104618667 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 2150 114 7 0 chr11 46164889 46165178 -104618375 - AluSq SINE Alu -22 291 1 1764 161 3 58 chr11 46165178 46165317 -104618236 - AluJo SINE Alu -197 115 1 282 316 11 11 chr11 46165740 46165807 -104617746 + MIR3 SINE MIR 90 159 -49 2294 158 54 5 chr11 46165807 46166213 -104617340 + MSTB LTR MaLR 1 426 0 282 316 11 11 chr11 46166213 46166240 -104617313 + MIR3 SINE MIR 158 184 -24 252 86 0 0 chr11 46166279 46166314 -104617239 + (CA)n Simple_repeat Simple_repeat 1 35 0 503 264 66 30 chr11 46166314 46166481 -104617072 + MER112 DNA MER1_type 88 260 0 335 188 50 40 chr11 46166987 46167088 -104616465 + MIR SINE MIR 28 129 -133 2006 155 0 7 chr11 46167731 46168041 -104615512 - AluSx SINE Alu -4 308 1 245 267 27 13 chr11 46168372 46168447 -104615106 - MIR SINE MIR -71 137 62 272 209 12 0 chr11 46169530 46169616 -104613937 + CT-rich Low_complexity Low_complexity 1 87 0 231 167 0 0 chr11 46169935 46169977 -104613576 + (CA)n Simple_repeat Simple_repeat 1 42 0 242 339 25 8 chr11 46170588 46170709 -104612844 - MIR3 SINE MIR -4 204 82 747 166 0 58 chr11 46171123 46171262 -104612291 - FLAM_A SINE Alu -2 131 1 204 245 0 0 chr11 46171871 46171920 -104611633 - MIR SINE MIR -10 252 204 207 314 0 0 chr11 46172091 46172142 -104611411 - MIR SINE MIR -113 95 45 212 278 78 22 chr11 46172794 46172884 -104610669 - L2 LINE L2 -208 3105 3011 * 282 241 60 17 chr11 46172873 46172989 -104610564 - MIR3 SINE MIR -73 135 15 230 261 81 0 chr11 46172979 46173090 -104610463 + L2 LINE L2 1985 2104 -1210 * 195 244 178 0 chr11 46173142 46173232 -104610321 + L2 LINE L2 2231 2336 -978 504 302 82 35 chr11 46173258 46173596 -104609957 - MLT1J1 LTR MaLR -40 410 54 2173 123 7 0 chr11 46173992 46174300 -104609253 + AluSx SINE Alu 1 310 -2 545 293 79 53 chr11 46174990 46175085 -104608468 + L2 LINE L2 2369 2460 -854 2042 131 10 0 chr11 46175085 46175375 -104608178 - AluSx SINE Alu -17 295 3 545 293 79 53 chr11 46175375 46175597 -104607956 + L2 LINE L2 2460 2694 -620 240 35 0 0 chr11 46175598 46175627 -104607926 + (TTA)n Simple_repeat Simple_repeat 1 29 0 866 142 0 0 chr11 46175630 46175750 -104607803 - FLAM_C SINE Alu -23 120 1 535 252 163 58 chr11 46175751 46175829 -104607724 + L2 LINE L2 2686 2754 -559 2324 73 3 17 chr11 46175829 46176129 -104607424 - AluY SINE Alu -15 296 1 535 252 163 58 chr11 46176129 46176335 -104607218 + L2 LINE L2 2754 3001 -312 684 216 29 86 chr11 46176370 46176615 -104606938 + MIR SINE MIR 29 259 -3 263 288 144 18 chr11 46176781 46176892 -104606661 + L2 LINE L2 3144 3268 -4 608 249 155 19 chr11 46177131 46177344 -104606209 + MIR SINE MIR 21 262 0 384 22 0 0 chr11 46177501 46177546 -104606007 + (TG)n Simple_repeat Simple_repeat 1 45 0 24 0 0 0 chr11 46177927 46177951 -104605602 + GC_rich Low_complexity Low_complexity 1 24 0 22 103 0 0 chr11 46178146 46178224 -104605329 + GC_rich Low_complexity Low_complexity 1 78 0 29 70 0 0 chr11 46178380 46178437 -104605116 + GC_rich Low_complexity Low_complexity 1 57 0 303 324 149 31 chr11 46178470 46178692 -104604861 + L1M2 LINE L1 449 696 -6153 23 68 0 0 chr11 46178932 46178976 -104604577 + GC_rich Low_complexity Low_complexity 1 44 0 1958 134 6 16 chr11 46181207 46181521 -104602032 + AluJb SINE Alu 1 311 -1 2873 179 72 9 chr11 46181800 46182399 -104601154 - Charlie1a DNA MER1_type -772 683 2 298 232 14 0 chr11 46182399 46182468 -104601085 + L1MC4 LINE L1 7833 7902 -140 1981 141 7 0 chr11 46182770 46183074 -104600479 - AluSx SINE Alu -6 306 1 2232 114 0 0 chr11 46183287 46183584 -104599969 + AluSx SINE Alu 1 297 -15 222 37 0 0 chr11 46184518 46184545 -104599008 + (A)n Simple_repeat Simple_repeat 1 27 0 1095 199 6 6 chr11 46184623 46184799 -104598754 + MER45A DNA AcHobo 2 177 -1 534 233 30 38 chr11 46185176 46185309 -104598244 - L2 LINE L2 0 3272 3141 1543 160 66 4 chr11 46185509 46185765 -104597788 + AluJb SINE Alu 12 283 -29 607 165 79 24 chr11 46185832 46185996 -104597557 - MER104 DNA Tc2 -5 175 3 500 164 10 67 chr11 46186277 46186381 -104597172 - Tigger7 DNA MER2_type -1 2586 2489 947 165 63 0 chr11 46186382 46186540 -104597013 - Tigger7 DNA MER2_type -468 265 98 2441 92 0 6 chr11 46186543 46186857 -104596696 + AluSq SINE Alu 1 312 -1 2327 117 0 0 chr11 46187083 46187392 -104596161 + AluSx SINE Alu 1 309 -3 862 161 0 0 chr11 46188522 46188652 -104594901 - FLAM_A SINE Alu 0 133 4 322 232 61 50 chr11 46188799 46188898 -104594655 - L2 LINE L2 0 3272 3173 447 304 136 0 chr11 46190441 46190625 -104592928 - LTR16A LTR ERVL -241 209 1 286 218 201 0 chr11 46191064 46191159 -104592394 - AluSc SINE Alu -118 181 110 240 259 133 32 chr11 46191355 46191513 -104592040 + MLT1L LTR MaLR 204 377 -238 913 252 97 43 chr11 46191583 46192070 -104591483 - L2 LINE L2 -71 3242 2727 309 239 114 0 chr11 46192070 46192158 -104591395 + AluJb SINE Alu 91 188 -114 302 333 75 13 chr11 46193260 46193419 -104590134 - MIR SINE MIR -71 191 23 898 142 116 0 chr11 46194512 46194667 -104588886 + MER2 DNA MER2_type 1 173 -172 317 264 28 0 chr11 46194779 46194851 -104588702 + MER2 DNA MER2_type 269 342 -3 553 156 85 35 chr11 46194939 46195080 -104588473 - MER106B DNA MER1_type -9 1050 903 216 0 0 0 chr11 46196620 46196644 -104586909 + (TTCA)n Simple_repeat Simple_repeat 4 27 0 2304 104 0 3 chr11 46196690 46196989 -104586564 + AluSx SINE Alu 1 298 -14 603 273 109 50 chr11 46197125 46197430 -104586123 - L2 LINE L2 -700 2614 2274 486 88 0 0 chr11 46197430 46197498 -104586055 + (TA)n Simple_repeat Simple_repeat 2 69 0 603 273 109 50 chr11 46197498 46197631 -104585922 - L2 LINE L2 -1040 2274 2150 1493 165 18 48 chr11 46197717 46197812 -104585741 - MER33 DNA MER1_type -2261 324 228 2439 75 0 10 chr11 46197812 46198120 -104585433 - AluY SINE Alu -6 305 1 1493 165 18 48 chr11 46198120 46198357 -104585196 - MER33 DNA MER1_type -2357 228 2 1079 200 47 28 chr11 46198443 46198658 -104584895 + MER20 DNA MER1_type 1 219 0 1546 269 49 65 chr11 46201567 46202158 -104581395 - MER21B LTR ERV1 -156 707 127 3632 147 51 12 chr11 46202158 46202805 -104580748 + L1MA4 LINE L1 5629 6300 0 1546 269 49 65 chr11 46202805 46202872 -104580681 - MER21B LTR ERV1 -736 127 60 634 363 62 11 chr11 46203075 46203571 -104579982 - L2 LINE L2 -219 3094 2569 435 235 151 24 chr11 46203695 46203861 -104579692 - MIR SINE MIR -8 254 68 288 320 70 19 chr11 46203861 46204017 -104579536 - L2 LINE L2 -856 2458 2295 203 214 0 0 chr11 46204796 46204838 -104578715 + L2 LINE L2 3229 3270 -2 350 286 197 26 chr11 46204867 46205071 -104578482 - MIR SINE MIR -12 250 14 2257 78 7 3 chr11 46205197 46205514 -104578039 + AluSp SINE Alu 1 318 0 324 0 0 0 chr11 46206028 46206064 -104577489 + (TA)n Simple_repeat Simple_repeat 1 36 0 6991 118 12 4 chr11 46207238 46208379 -104575174 - L1MA4A LINE L1 0 6303 5153 2305 97 0 0 chr11 46208499 46208798 -104574755 - AluY SINE Alu -11 300 2 725 234 51 0 chr11 46209870 46210045 -104573508 + MIR SINE MIR 7 190 -72 280 314 152 33 chr11 46210393 46210603 -104572950 + L2 LINE L2 3038 3272 0 228 321 92 0 chr11 46210876 46210985 -104572568 - L2 LINE L2 -212 3060 2942 438 318 90 10 chr11 46211210 46211411 -104572142 + MIR SINE MIR 7 223 -39 29 0 0 0 chr11 46212252 46212281 -104571272 + AT_rich Low_complexity Low_complexity 1 29 0 2703 101 8 0 chr11 46212281 46212647 -104570906 - L1PB1 LINE L1 -1 6150 5782 342 127 0 0 chr11 46212647 46212718 -104570835 + (TA)n Simple_repeat Simple_repeat 1 71 0 4374 180 5 4 chr11 46212719 46213698 -104569855 - L1PB1 LINE L1 -714 5437 4458 251 235 20 0 chr11 46213713 46213764 -104569789 - L2 LINE L2 -20 3252 3201 217 411 0 0 chr11 46215835 46215925 -104567628 - L2 LINE L2 -529 2785 2696 325 346 31 31 chr11 46217229 46217391 -104566162 + L3 LINE CR1 35 196 -1381 5460 45 2 0 chr11 46217994 46218615 -104564938 - L1PA5 LINE L1 -6 6148 5527 35 24 0 0 chr11 46218673 46218715 -104564838 + AT_rich Low_complexity Low_complexity 1 42 0 1985 158 0 22 chr11 46218908 46219224 -104564329 - AluJo SINE Alu -1 311 3 248 293 103 0 chr11 46219258 46219374 -104564179 + L2 LINE L2 3174 3301 -12 248 316 194 0 chr11 46219468 46219607 -104563946 + L3 LINE CR1 1277 1442 -135 834 224 117 75 chr11 46219610 46219918 -104563635 + MER102a DNA MER1_type 1 321 -9 1857 199 12 12 chr11 46220022 46220364 -104563189 - MLT1A1 LTR MaLR 0 365 24 1009 104 8 0 chr11 46220369 46220503 -104563050 + AluJb SINE Alu 1 135 -177 1942 152 0 0 chr11 46220503 46220799 -104562754 + AluJb SINE Alu 1 296 -16 2671 45 0 3 chr11 46221726 46222037 -104561516 - AluY SINE Alu -1 310 1 2781 10 3 0 chr11 46223792 46224094 -104559459 - AluYa5 SINE Alu -8 303 1 763 161 7 14 chr11 46226940 46227083 -104556470 - L1MB8 LINE L1 -2 6176 6035 24 53 0 0 chr11 46227091 46227129 -104556424 + AT_rich Low_complexity Low_complexity 1 38 0 5317 156 31 19 chr11 46230957 46232145 -104551408 - L1MB3 LINE L1 -1 6182 4975 575 293 121 17 chr11 46232454 46232686 -104550867 - MIR SINE MIR 0 262 7 286 286 114 29 chr11 46233992 46234132 -104549421 + L2 LINE L2 2686 2837 -477 1767 235 98 65 chr11 46235365 46235571 -104547982 - L1MD3 LINE L1 0 8039 7841 1677 170 37 0 chr11 46235571 46235873 -104547680 - AluJb SINE Alu 0 312 1 1767 235 98 65 chr11 46235873 46236478 -104547075 - L1MD3 LINE L1 -198 7841 7206 313 390 0 7 chr11 46236644 46236780 -104546773 + MIR3 SINE MIR 11 145 -63 1897 149 10 3 chr11 46236972 46237268 -104546285 + AluSx SINE Alu 2 299 -13 257 311 75 9 chr11 46237296 46237402 -104546151 - L2 LINE L2 -4 3268 3156 194 219 59 101 chr11 46237518 46237687 -104545866 - L2 LINE L2 -80 3233 3072 2006 139 0 29 chr11 46238010 46238326 -104545227 + AluJo SINE Alu 2 308 -4 532 295 33 15 chr11 46239173 46239378 -104544175 - MIR SINE MIR -55 207 2 * 963 267 95 62 chr11 46239378 46239607 -104543946 + L2 LINE L2 2470 2690 -623 1773 145 11 11 chr11 46239607 46239912 -104543641 + AluJb SINE Alu 1 305 0 963 267 95 62 chr11 46239912 46240486 -104543067 + L2 LINE L2 2690 3310 -3 2160 82 7 0 chr11 46241367 46241649 -104541904 + AluSx SINE Alu 1 284 -28 27 29 0 0 chr11 46241670 46241704 -104541849 + AT_rich Low_complexity Low_complexity 1 34 0 354 248 143 9 chr11 46242274 46242379 -104541174 - L2 LINE L2 -4 3309 3191 212 389 130 4 chr11 46242402 46242641 -104540912 + L2 LINE L2 2810 3078 -194 2234 85 10 7 chr11 46243643 46243950 -104539603 + AluY SINE Alu 1 308 -3 1750 147 19 25 chr11 46244091 46244405 -104539148 + AluJb SINE Alu 1 312 0 303 71 0 0 chr11 46247291 46247333 -104536220 + (TTGG)n Simple_repeat Simple_repeat 2 43 0 1526 171 10 41 chr11 46247425 46247718 -104535835 + AluJo SINE Alu 1 284 -28 3155 132 42 19 chr11 46247818 46247898 -104535655 + MER41B LTR ERV1 94 171 -464 2241 98 3 29 chr11 46247898 46248205 -104535348 + AluSg SINE Alu 2 300 -10 3155 132 42 19 chr11 46248205 46248653 -104534900 + MER41B LTR ERV1 171 634 -1 2379 173 103 55 chr11 46248886 46249236 -104534317 - LTR9 LTR ERV1 -1 611 220 2396 96 3 3 chr11 46249236 46249549 -104534004 - AluSp SINE Alu 0 313 1 2379 173 103 55 chr11 46249549 46249781 -104533772 - LTR9 LTR ERV1 -392 220 1 281 245 28 47 chr11 46249819 46249923 -104533630 + MLT1J2 LTR MaLR 9 110 -340 635 221 8 0 chr11 46249923 46250050 -104533503 - MLT1A1 LTR MaLR 0 365 238 2303 126 62 72 chr11 46250056 46250613 -104532940 - LTR8A LTR ERV1 0 727 166 2251 151 17 50 chr11 46250613 46251030 -104532523 - MER57A LTR ERV1 0 403 1 2303 126 62 72 chr11 46251030 46251091 -104532462 - LTR8A LTR ERV1 -561 166 106 2219 109 0 3 chr11 46251091 46251384 -104532169 - AluSg SINE Alu -18 292 1 2303 126 62 72 chr11 46251384 46251409 -104532144 - LTR8A LTR ERV1 -621 106 1 1639 138 58 43 chr11 46251409 46251731 -104531822 - LTR59 LTR ERV1 -9 588 262 6044 87 11 44 chr11 46251731 46252588 -104530965 - MER4D LTR ERV1 0 872 45 3082 166 78 51 chr11 46252588 46253295 -104530258 + LTR8A LTR ERV1 2 727 0 6044 87 11 44 chr11 46253295 46253339 -104530214 - MER4D LTR ERV1 -827 45 1 1234 150 167 0 chr11 46253339 46253566 -104529987 - LTR59 LTR ERV1 -332 265 1 705 181 37 141 chr11 46253566 46253836 -104529717 - MLT1A1 LTR MaLR -123 242 1 340 274 86 98 chr11 46254969 46255054 -104528499 - L1MEd LINE L1 -3104 3025 2940 2121 128 14 0 chr11 46255054 46255351 -104528202 - AluSx SINE Alu -11 301 1 340 274 86 98 chr11 46255351 46255468 -104528085 - L1MEd LINE L1 -3189 2940 2823 2179 103 3 25 chr11 46255468 46255787 -104527766 - AluSq SINE Alu -1 312 1 340 274 86 98 chr11 46255787 46255908 -104527645 - L1MEd LINE L1 -3306 2823 2705 26 0 0 0 chr11 46255955 46255981 -104527572 + AT_rich Low_complexity Low_complexity 1 26 0 482 308 43 25 chr11 46255993 46256206 -104527347 + MLT1J2 LTR MaLR 1 257 -254 229 151 75 57 chr11 46256298 46256351 -104527202 + MLT1J LTR MaLR 394 447 -64 480 115 21 10 chr11 46256368 46256422 -104527131 + CT-rich Low_complexity Low_complexity 2 59 -39 2368 95 119 0 chr11 46256422 46256759 -104526794 + MER51B LTR ERV1 1 377 0 480 115 21 10 chr11 46256759 46256800 -104526753 + CT-rich Low_complexity Low_complexity 59 98 0 254 200 0 20 chr11 46257914 46257964 -104525589 + MLT1J LTR MaLR 1 49 -462 295 287 75 30 chr11 46258471 46258739 -104524814 - L1MEd LINE L1 -3680 2449 2170 354 232 0 0 chr11 46258761 46258830 -104524723 + L1M4 LINE L1 3458 3526 -2620 2200 100 23 0 chr11 46258833 46259132 -104524421 + AluY SINE Alu 1 306 -5 8317 189 20 31 chr11 46259174 46260814 -104522739 + L1M4 LINE L1 3536 5154 -1006 2334 118 0 0 chr11 46260814 46261120 -104522433 + AluSx SINE Alu 1 306 -6 8317 189 20 31 chr11 46261120 46261351 -104522202 + L1M4 LINE L1 5154 5386 -774 250 279 188 29 chr11 46261363 46261671 -104521882 - HAL1b LINE L1 -898 450 94 2499 86 0 3 chr11 46261838 46262152 -104521401 - AluSq SINE Alu 0 313 1 1556 123 9 14 chr11 46262678 46262898 -104520655 + MER20B DNA MER1_type 1 219 0 239 325 77 77 chr11 46263274 46263727 -104519826 - L1MEd LINE L1 -5569 550 98 1870 133 0 54 chr11 46263741 46264056 -104519497 + AluJb SINE Alu 2 299 -13 359 295 9 0 chr11 46264087 46264192 -104519361 + MIR SINE MIR 132 237 -25 820 169 7 7 chr11 46264708 46264850 -104518703 + AluJo SINE Alu 1 142 -170 1875 164 7 0 chr11 46264884 46265177 -104518376 - AluJb SINE Alu -17 295 1 1101 233 31 37 chr11 46265183 46265509 -104518044 - L1MC4 LINE L1 -758 7284 6961 292 269 30 0 chr11 46265538 46265605 -104517948 + L2 LINE L2 3208 3276 -37 192 294 24 24 chr11 46265627 46265712 -104517841 + MIR SINE MIR 132 216 -46 1542 127 0 9 chr11 46265724 46265944 -104517609 + AluSx SINE Alu 1 218 -94 210 71 0 0 chr11 46265960 46265988 -104517565 + (GAAAA)n Simple_repeat Simple_repeat 2 29 0 1106 221 52 12 chr11 46265999 46266248 -104517305 - MIR SINE MIR -2 260 2 384 344 80 40 chr11 46266639 46266790 -104516763 + L2 LINE L2 3116 3272 0 210 244 39 51 chr11 46266884 46266962 -104516591 - MIR SINE MIR -83 125 49 761 179 0 0 chr11 46267536 46267653 -104515900 + FLAM_C SINE Alu 1 117 -16 273 277 81 68 chr11 46267688 46267836 -104515717 + MER5A DNA MER1_type 40 189 0 405 0 0 0 chr11 46268086 46268131 -104515422 + (TCTA)n Simple_repeat Simple_repeat 2 46 0 484 238 10 10 chr11 46268679 46268780 -104514773 + L2 LINE L2 3210 3310 -3 1060 210 88 48 chr11 46268905 46269200 -104514353 - MLT1C LTR MaLR -102 365 59 1409 207 87 5 chr11 46269262 46269659 -104513894 + MLT1F LTR MaLR 9 531 -11 627 235 45 35 chr11 46269670 46269870 -104513683 + MLT1F-int LTR MaLR 1 202 -1169 241 215 31 15 chr11 46269907 46269972 -104513581 + MLT1F-int LTR MaLR 536 601 -770 918 287 48 106 chr11 46270214 46270584 -104512969 + MLT1F-int LTR MaLR 699 1008 -363 198 0 0 0 chr11 46270584 46270606 -104512947 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 918 287 48 106 chr11 46270606 46270950 -104512603 + MLT1F-int LTR MaLR 1008 1371 0 285 309 12 0 chr11 46270950 46271031 -104512522 + MLT1F LTR MaLR 1 82 -460 794 260 130 23 chr11 46271139 46271523 -104512030 - MLT1J1 LTR MaLR -1 445 21 2511 165 37 51 chr11 46271856 46272364 -104511189 + MLT1D LTR MaLR 2 502 -3 660 162 9 9 chr11 46272446 46272557 -104510996 + MIR SINE MIR 34 144 -118 2303 108 3 3 chr11 46272671 46272977 -104510576 - AluSx SINE Alu -6 306 1 306 0 0 0 chr11 46273451 46273485 -104510068 + (T)n Simple_repeat Simple_repeat 1 34 0 1268 155 52 5 chr11 46273816 46274029 -104509524 + AluJo SINE Alu 87 309 -3 355 284 84 67 chr11 46274318 46274345 -104509208 - L1ME4a LINE L1 -5 6116 6091 1514 114 0 0 chr11 46274345 46274547 -104509006 + AluSg/x SINE Alu 109 310 0 355 284 84 67 chr11 46274547 46274949 -104508604 - L1ME4a LINE L1 -30 6091 5680 310 297 86 54 chr11 46274985 46275387 -104508166 - L1ME4a LINE L1 -748 5398 5197 551 267 91 21 chr11 46275431 46275618 -104507935 - MIR SINE MIR -18 244 45 915 263 86 14 chr11 46275659 46275765 -104507788 - LTR16C LTR ERVL -8 483 386 243 0 0 0 chr11 46275765 46275792 -104507761 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 915 263 86 14 chr11 46275792 46276046 -104507507 - LTR16C LTR ERVL -105 386 97 2046 88 15 0 chr11 46276899 46277161 -104506392 - AluSx SINE Alu -12 300 35 243 289 40 0 chr11 46277358 46277434 -104506119 + MIR SINE MIR 33 111 -97 292 209 79 22 chr11 46277435 46277574 -104505979 - LTR16A LTR ERVL -3 447 301 241 200 22 0 chr11 46278028 46278073 -104505480 - L2 LINE L2 -4 3309 3264 331 329 56 37 chr11 46278440 46278501 -104505052 + MIR SINE MIR 99 157 -105 2264 108 0 3 chr11 46278501 46278798 -104504755 + AluSx SINE Alu 1 296 -16 331 329 56 37 chr11 46278798 46278897 -104504656 + MIR SINE MIR 157 262 0 275 306 51 20 chr11 46280237 46280335 -104503218 - L2 LINE L2 -46 3226 3126 301 137 20 0 chr11 46280389 46280440 -104503113 + L2 LINE L2 2283 2334 -980 324 85 83 12 chr11 46280440 46280669 -104502884 + AluSq SINE Alu 1 320 0 752 278 140 52 chr11 46280674 46281561 -104501992 + L2 LINE L2 2325 3311 -2 224 200 0 0 chr11 46281835 46281875 -104501678 + (TCCA)n Simple_repeat Simple_repeat 1 40 0 448 290 0 62 chr11 46281899 46282061 -104501492 + MIR3 SINE MIR 30 181 -27 693 162 111 0 chr11 46283484 46283601 -104499952 - FLAM_A SINE Alu 0 133 4 521 170 62 36 chr11 46283842 46283954 -104499599 + MIR3 SINE MIR 49 163 -45 198 288 14 0 chr11 46284648 46284721 -104498832 + L2 LINE L2 2423 2496 -818 730 266 56 47 chr11 46284723 46284914 -104498639 + MIR SINE MIR 28 223 -39 1756 168 53 34 chr11 46284914 46285271 -104498282 - MLT1A1 LTR MaLR 0 365 2 730 266 56 47 chr11 46285271 46285312 -104498241 + MIR SINE MIR 223 262 0 2087 139 3 0 chr11 46285465 46285759 -104497794 + AluSx SINE Alu 7 301 -11 555 188 134 0 chr11 46285799 46285911 -104497642 - L2 LINE L2 0 3313 3187 330 306 90 15 chr11 46285883 46286017 -104497536 + MIR SINE MIR 27 170 -92 * 2200 125 3 0 chr11 46286181 46286484 -104497069 + AluSx SINE Alu 1 304 -8 192 152 0 0 chr11 46286674 46286707 -104496846 + T-rich Low_complexity Low_complexity 1 33 0 2140 111 23 7 chr11 46286709 46287016 -104496537 - AluJo SINE Alu 0 312 1 217 296 99 0 chr11 46287183 46287254 -104496299 + L2 LINE L2 3170 3247 -25 587 272 89 29 chr11 46287431 46287747 -104495806 - MLT1J2 LTR MaLR -1 445 104 368 224 37 19 chr11 46288461 46288568 -104494985 + MER20B DNA MER1_type 30 138 -645 544 179 86 8 chr11 46288646 46288763 -104494790 - MER5A DNA MER1_type -63 126 1 1408 254 61 30 chr11 46288771 46289176 -104494377 + MER20B DNA MER1_type 227 618 -165 254 73 24 0 chr11 46289176 46289217 -104494336 + (TG)n Simple_repeat Simple_repeat 1 42 0 1408 254 61 30 chr11 46289217 46289296 -104494257 + MER20B DNA MER1_type 618 693 -90 2016 126 3 7 chr11 46289296 46289603 -104493950 - AluJb SINE Alu 0 306 1 1408 254 61 30 chr11 46289603 46289656 -104493897 + MER20B DNA MER1_type 693 783 0 301 311 19 10 chr11 46289878 46289981 -104493572 - MIR SINE MIR -130 132 29 292 282 13 0 chr11 46290082 46290160 -104493393 - L2 LINE L2 -56 3257 3179 445 330 214 7 chr11 46290385 46290506 -104493047 - L2 LINE L2 -417 2897 2802 1711 197 89 21 chr11 46290506 46290943 -104492610 + MLT1C LTR MaLR 1 467 0 445 330 214 7 chr11 46290943 46291373 -104492180 - L2 LINE L2 -512 2802 2232 2042 146 17 0 chr11 46291475 46291777 -104491776 - AluSx SINE Alu -5 307 1 543 194 8 47 chr11 46291778 46291907 -104491646 + MER5B DNA MER1_type 5 128 -50 283 179 189 28 chr11 46291934 46292040 -104491513 - HAL1 LINE L1 -1747 760 638 866 255 20 8 chr11 46292046 46292293 -104491260 - HAL1 LINE L1 -2232 275 26 225 224 52 0 chr11 46292360 46292418 -104491135 - MLT1L LTR MaLR -3 612 552 809 262 53 12 chr11 46292652 46292896 -104490657 + MIR SINE MIR 2 255 -7 325 112 31 41 chr11 46293325 46293423 -104490130 + (TTCA)n Simple_repeat Simple_repeat 3 99 0 1246 182 5 5 chr11 46293434 46293643 -104489910 - AluJb SINE Alu -17 295 87 631 226 136 35 chr11 46293649 46293848 -104489705 + MIR SINE MIR 29 247 -15 297 269 0 0 chr11 46293846 46293913 -104489640 - MIR SINE MIR 0 262 196 * 1400 211 109 24 chr11 46293920 46294432 -104489121 - MLT1E LTR MaLR 0 593 2 581 144 215 67 chr11 46294471 46294666 -104488887 - MER2 DNA MER2_type -1 344 121 724 161 0 8 chr11 46294667 46294785 -104488768 + AluJb SINE Alu 2 118 -194 2447 94 3 0 chr11 46294785 46295093 -104488460 - AluSx SINE Alu -3 309 1 617 130 0 0 chr11 46295131 46295223 -104488330 + AluSg/x SINE Alu 217 308 -2 356 211 0 67 chr11 46295328 46295447 -104488106 + AluSg/x SINE Alu 217 300 0 * 807 159 15 0 chr11 46295444 46295576 -104487977 - MER2 DNA MER2_type -210 135 2 385 263 254 0 chr11 46295586 46295700 -104487853 - MIR SINE MIR -118 144 2 422 338 71 7 chr11 46295740 46295894 -104487659 - L2 LINE L2 -18 3254 3091 495 0 0 0 chr11 46296445 46296500 -104487053 + (TG)n Simple_repeat Simple_repeat 2 56 0 480 242 47 47 chr11 46297375 46297524 -104486029 + MIR SINE MIR 80 228 -34 840 190 0 60 chr11 46297950 46298040 -104485513 - L1MB3 LINE L1 -2 6181 6108 2130 115 35 0 chr11 46298040 46298326 -104485227 + AluSx SINE Alu 1 296 -16 840 190 0 60 chr11 46298326 46298435 -104485118 - L1MB3 LINE L1 -75 6108 5994 216 0 0 0 chr11 46299145 46299169 -104484384 + (AGCTG)n Simple_repeat Simple_repeat 2 25 0 208 317 0 0 chr11 46299277 46299337 -104484216 - MIR SINE MIR -79 129 70 474 250 175 12 chr11 46299392 46299552 -104484001 + MER5A DNA MER1_type 4 189 0 244 260 14 14 chr11 46300311 46300384 -104483169 - MER81 DNA DNA -7 107 35 566 228 39 44 chr11 46300421 46300601 -104482952 - MIR SINE MIR -57 205 27 335 300 124 43 chr11 46301056 46301169 -104482384 + MIR SINE MIR 36 138 -124 2272 123 3 0 chr11 46301169 46301470 -104482083 - AluSx SINE Alu -8 304 3 335 300 124 43 chr11 46301470 46301566 -104481987 + MIR SINE MIR 138 262 0 444 274 13 93 chr11 46302295 46302521 -104481032 + MIR SINE MIR 54 261 -1 208 240 192 29 chr11 46303112 46303216 -104480337 + MIR3 SINE MIR 39 159 -49 520 293 61 0 chr11 46303217 46303381 -104480172 + MIR SINE MIR 1 174 -88 479 290 148 0 chr11 46303410 46303572 -104479981 - MIR SINE MIR -11 251 66 1807 157 0 4 chr11 46303572 46303852 -104479701 + AluJb SINE Alu 21 299 -13 2099 145 3 0 chr11 46304151 46304455 -104479098 + AluJb SINE Alu 1 305 -7 2357 86 7 0 chr11 46304726 46305016 -104478537 + AluSp SINE Alu 1 292 -21 374 218 64 0 chr11 46305024 46305102 -104478451 - L2 LINE L2 -1 3312 3230 200 347 8 40 chr11 46305786 46305910 -104477643 + L2 LINE L2 2521 2640 -674 346 311 44 50 chr11 46305964 46306144 -104477409 + L2 LINE L2 3120 3298 -15 243 234 0 0 chr11 46306211 46306258 -104477295 + L2 LINE L2 3267 3313 0 192 163 0 0 chr11 46306437 46306480 -104477073 + (TG)n Simple_repeat Simple_repeat 1 43 0 850 264 25 29 chr11 46306876 46306957 -104476596 + L1MC4a LINE L1 5482 5562 -559 2344 101 0 0 chr11 46306957 46307254 -104476299 - AluSq SINE Alu -16 297 1 850 264 25 29 chr11 46307254 46307503 -104476050 + L1MC4a LINE L1 5562 5806 -315 256 292 14 0 chr11 46307526 46307598 -104475955 + L2 LINE L2 2026 2098 -1216 365 161 0 0 chr11 46307598 46307660 -104475893 + MER20 DNA MER1_type 158 219 0 259 274 0 0 chr11 46307662 46307766 -104475787 + L2 LINE L2 3215 3312 -1 305 266 166 0 chr11 46307768 46307907 -104475646 + L1MC4a LINE L1 5813 5974 -1834 2037 119 0 56 chr11 46307941 46308260 -104475293 - AluSx SINE Alu -11 301 1 191 360 16 40 chr11 46308601 46308726 -104474827 - MIR SINE MIR -68 194 73 1364 204 49 120 chr11 46308784 46309358 -104474195 - MLT1F LTR MaLR -6 536 4 334 281 94 106 chr11 46309816 46310051 -104473502 - MIR SINE MIR -11 251 20 494 277 178 15 chr11 46310387 46310589 -104472964 + MIR SINE MIR 2 236 -26 316 234 198 27 chr11 46311503 46311614 -104471939 + MIR3 SINE MIR 71 200 -8 466 296 29 71 chr11 46311720 46311960 -104471593 - L2 LINE L2 -91 3181 2952 439 225 124 39 chr11 46311973 46312102 -104471451 + MER91C DNA MER1_type 1 140 0 447 278 77 18 chr11 46312273 46312442 -104471111 + MIR SINE MIR 34 212 -50 287 54 54 36 chr11 46313311 46313367 -104470186 - L1MB7 LINE L1 0 6184 6128 732 197 0 0 chr11 46313367 46313494 -104470059 + FLAM_C SINE Alu 17 143 0 4046 170 60 8 chr11 46313498 46314838 -104468715 - L1MB7 LINE L1 -43 6639 5231 1856 206 39 17 chr11 46314831 46315296 -104468257 - L1MB7 LINE L1 -1833 4811 4337 * 6021 153 12 3 chr11 46315298 46317299 -104466254 - L1PB1 LINE L1 0 6151 4134 5925 227 53 29 chr11 46317266 46317701 -104465852 - L1MB7 LINE L1 -2259 4385 3962 * 1917 161 3 25 chr11 46317701 46318018 -104465535 - AluJb SINE Alu -2 310 1 5925 227 53 29 chr11 46318018 46318639 -104464914 - L1MB7 LINE L1 -2682 3962 3358 2417 192 72 0 chr11 46318639 46319077 -104464476 + MLT2B1 LTR ERVL 1 406 -114 258 32 0 0 chr11 46319077 46319108 -104464445 + (TC)n Simple_repeat Simple_repeat 2 32 0 * 369 0 0 0 chr11 46319107 46319148 -104464405 + (TG)n Simple_repeat Simple_repeat 2 42 0 2417 192 72 0 chr11 46319108 46319194 -104464359 + MLT2B1 LTR ERVL 406 520 0 5925 227 53 29 chr11 46319194 46321398 -104462155 - L1MB7 LINE L1 -3286 3358 916 2368 92 7 0 chr11 46321398 46321691 -104461862 - AluSp SINE Alu -18 295 1 5925 227 53 29 chr11 46321691 46322087 -104461466 - L1MB7 LINE L1 -5728 916 531 272 259 84 53 chr11 46322087 46322218 -104461335 + MIR SINE MIR 122 256 -6 208 319 176 22 chr11 46322277 46322368 -104461185 - MIR SINE MIR -87 121 17 1677 201 7 10 chr11 46322546 46322839 -104460714 + AluJo SINE Alu 1 292 -20 843 190 147 11 chr11 46323012 46323196 -104460357 + MER3 DNA MER1_type 1 209 0 328 229 42 147 chr11 46323272 46323512 -104460041 + MIR SINE MIR 4 212 -41 971 251 171 16 chr11 46323626 46324102 -104459451 + L2 LINE L2 2510 3053 -260 349 224 13 13 chr11 46324105 46324181 -104459372 + L2 LINE L2 3237 3312 -1 326 248 44 97 chr11 46324246 46324359 -104459194 + MIR3 SINE MIR 77 183 -25 594 0 0 0 chr11 46324633 46324699 -104458854 + (TTTTA)n Simple_repeat Simple_repeat 5 70 0 243 0 0 0 chr11 46324721 46324748 -104458805 + (T)n Simple_repeat Simple_repeat 1 27 0 397 320 14 14 chr11 46325531 46325678 -104457875 - MIR SINE MIR -69 193 47 574 284 49 0 chr11 46325714 46325876 -104457677 + MIR SINE MIR 50 219 -43 1292 270 47 7 chr11 46326183 46326591 -104456962 - LTR16B LTR ERVL -40 424 1 305 257 19 38 chr11 46326593 46326698 -104456855 + MIR SINE MIR 71 173 -89 498 227 98 10 chr11 46326699 46326903 -104456650 - MLT1H1 LTR MaLR 0 590 341 314 173 14 122 chr11 46327864 46327974 -104455579 - MIR SINE MIR -62 146 52 201 261 98 65 chr11 46328899 46328991 -104454562 + MER5A DNA MER1_type 62 163 -22 2507 101 27 36 chr11 46329069 46329434 -104454119 - THE1B LTR MaLR -2 362 1 192 238 0 0 chr11 46329575 46329617 -104453936 + L2 LINE L2 2741 2782 -532 1095 250 148 21 chr11 46329647 46330019 -104453534 + L2 LINE L2 2895 3313 0 2277 129 0 0 chr11 46330319 46330629 -104452924 + AluSx SINE Alu 1 310 -2 370 248 108 51 chr11 46330959 46331116 -104452437 + MIR SINE MIR 17 182 -80 2103 140 0 0 chr11 46331165 46331465 -104452088 + AluSx SINE Alu 2 301 -11 280 228 109 40 chr11 46331910 46332011 -104451542 + MIR SINE MIR 48 155 -107 208 321 83 18 chr11 46332412 46332521 -104451032 - L2 LINE L2 -8 3305 3190 423 38 0 0 chr11 46332521 46332574 -104450979 + (TCCA)n Simple_repeat Simple_repeat 1 53 0 1150 274 19 61 chr11 46332585 46333012 -104450541 - L2 LINE L2 0 3313 2905 466 278 30 77 chr11 46333065 46333377 -104450176 - L2 LINE L2 -206 3066 2777 190 317 0 92 chr11 46333542 46333662 -104449891 - L2 LINE L2 -520 2794 2686 * 229 348 43 70 chr11 46333636 46333751 -104449802 + L2 LINE L2 3183 3294 -19 2537 96 0 6 chr11 46333974 46334327 -104449226 + L1PB1 LINE L1 5800 6150 -1 318 267 11 33 chr11 46334333 46334423 -104449130 + MER5A DNA MER1_type 63 150 -39 337 294 65 23 chr11 46334578 46334774 -104448779 - MIR SINE MIR -43 219 19 285 287 233 7 chr11 46334895 46335045 -104448508 + MER5A DNA MER1_type 2 185 -4 589 345 54 5 chr11 46335552 46335775 -104447778 + MIR SINE MIR 19 252 -10 203 146 164 18 chr11 46335914 46335969 -104447584 + MIR SINE MIR 129 191 -71 334 289 21 21 chr11 46336031 46336128 -104447425 - L1MEd LINE L1 -5097 1022 926 278 140 80 0 chr11 46336197 46336247 -104447306 - MER58A DNA MER1_type -17 90 37 1133 318 140 33 chr11 46336249 46337154 -104446399 - L1 LINE L1 -1845 4301 3287 686 189 47 0 chr11 46337154 46337281 -104446272 - FLAM_C SINE Alu 0 133 1 1133 318 140 33 chr11 46337281 46337335 -104446218 - L1 LINE L1 -2859 3287 3240 1949 160 0 7 chr11 46337463 46337756 -104445797 + AluJb SINE Alu 1 291 -21 398 290 107 0 chr11 46337816 46337985 -104445568 - L1ME1 LINE L1 -19 6147 5961 466 247 152 4 chr11 46338023 46338266 -104445287 - L1MEc LINE L1 -4785 1525 1247 337 291 159 66 chr11 46338290 46338548 -104445005 - L1MEc LINE L1 -4942 1177 896 259 219 186 1 chr11 46338923 46339001 -104444552 + MIR SINE MIR 43 132 -76 386 327 9 0 chr11 46339001 46339108 -104444445 - MIR SINE MIR -56 152 45 1961 148 0 7 chr11 46339826 46340116 -104443437 + AluJb SINE Alu 7 294 -18 352 234 0 0 chr11 46341617 46341714 -104441839 + AluJ/FRAM SINE Alu 219 315 0 732 210 14 0 chr11 46341728 46341866 -104441687 + MER5A DNA MER1_type 47 186 -3 1103 173 9 62 chr11 46342045 46342270 -104441283 - MER58A DNA MER1_type 0 224 12 233 319 156 22 chr11 46343259 46343394 -104440159 - MIR SINE MIR -31 231 79 212 301 89 8 chr11 46343646 46343769 -104439784 - L2 LINE L2 -310 2962 2830 2265 129 0 0 chr11 46343802 46344111 -104439442 + AluJb SINE Alu 1 309 -3 182 229 42 21 chr11 46344580 46344628 -104438925 + L3b LINE CR1 1372 1420 -163 2446 86 0 0 chr11 46345503 46345806 -104437747 - AluY SINE Alu -8 303 1 236 258 177 8 chr11 46345807 46345931 -104437622 + MIR3 SINE MIR 45 189 -19 2016 143 3 0 chr11 46348246 46348532 -104435021 + AluSx SINE Alu 1 287 -25 275 236 118 112 chr11 46349027 46349113 -104434440 + MIR SINE MIR 49 133 -129 2350 117 0 0 chr11 46349113 46349421 -104434132 - AluSg SINE Alu -2 308 1 275 236 118 112 chr11 46349421 46349512 -104434041 + MIR SINE MIR 133 227 -35 185 351 0 0 chr11 46350321 46350398 -104433155 - L2 LINE L2 -299 2973 2897 2158 120 7 0 chr11 46351217 46351517 -104432036 + AluSq SINE Alu 1 302 -11 510 232 176 0 chr11 46352120 46352245 -104431308 - MER5B DNA MER1_type -3 175 29 1964 141 0 0 chr11 46352555 46352832 -104430721 + AluSx SINE Alu 2 278 -34 190 29 57 29 chr11 46352851 46352886 -104430667 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 235 338 19 94 chr11 46353537 46353624 -104429929 - L2 LINE L2 -4 3268 3197 2360 95 7 3 chr11 46353624 46353929 -104429624 + AluSg SINE Alu 1 306 -4 235 338 19 94 chr11 46353929 46354001 -104429552 - L2 LINE L2 -75 3197 3121 189 308 0 0 chr11 46353995 46354047 -104429506 - L2 LINE L2 -500 2814 2763 * 334 234 13 13 chr11 46354063 46354140 -104429413 - L2 LINE L2 -3 3310 3234 1841 158 31 0 chr11 46355274 46355565 -104427988 + AluJo SINE Alu 2 301 -11 982 181 275 3 chr11 46355579 46355866 -104427687 - MLT1A1 LTR MaLR 0 365 1 2005 112 14 0 chr11 46356126 46356434 -104427119 - AluSx SINE Alu 0 312 1 1722 248 93 37 chr11 46356451 46357254 -104426299 - L1M4 LINE L1 -2013 4133 3286 1711 130 12 23 chr11 46357262 46357601 -104425952 + MER61B LTR ERV1 1 425 0 2861 232 85 15 chr11 46357609 46358653 -104424900 - L1M4 LINE L1 -2889 3257 2141 335 263 30 20 chr11 46358801 46358900 -104424653 + L2 LINE L2 3172 3271 -1 297 287 0 50 chr11 46358924 46359025 -104424528 - MIR SINE MIR -59 149 54 348 24 0 0 chr11 46359230 46359271 -104424282 + (TG)n Simple_repeat Simple_repeat 2 42 0 1738 167 9 41 chr11 46359273 46359461 -104424092 - AluJo SINE Alu -4 308 133 2320 103 3 0 chr11 46359461 46359763 -104423790 + AluSg SINE Alu 1 303 -7 1738 167 9 41 chr11 46359763 46359892 -104423661 - AluJo SINE Alu -179 133 1 2977 136 75 22 chr11 46359918 46360455 -104423098 + MER34B LTR ERV1 1 565 0 454 233 37 61 chr11 46361529 46361692 -104421861 - MIR SINE MIR -1 261 103 182 180 330 10 chr11 46361811 46361911 -104421642 + L2 LINE L2 33 164 -3150 193 220 0 60 chr11 46362076 46362126 -104421427 + L2 LINE L2 3258 3304 -9 353 317 97 70 chr11 46362860 46362981 -104420572 + MIR SINE MIR 30 161 -101 1877 179 0 22 chr11 46362981 46363299 -104420254 + AluJb SINE Alu 1 311 -1 353 317 97 70 chr11 46363299 46363404 -104420149 + MIR SINE MIR 161 262 0 793 273 16 24 chr11 46363507 46363760 -104419793 - L2 LINE L2 -67 3246 2996 1066 203 115 119 chr11 46363761 46363876 -104419677 - MLT1F1 LTR MaLR 0 567 453 2301 98 20 0 chr11 46363876 46364182 -104419371 - AluSx SINE Alu 0 312 1 1066 203 115 119 chr11 46364182 46364563 -104418990 - MLT1F1 LTR MaLR -114 453 73 1250 299 51 28 chr11 46364599 46365099 -104418454 - L2 LINE L2 -313 3000 2490 191 295 205 9 chr11 46365468 46365580 -104417973 - L2 LINE L2 0 3313 3180 374 255 39 0 chr11 46366082 46366184 -104417369 + MIR SINE MIR 30 135 -73 1820 208 35 7 chr11 46366251 46366675 -104416878 + MER63B DNA MER1_type 1 436 0 2287 93 0 0 chr11 46366814 46367121 -104416432 - AluSg SINE Alu 0 307 1 1371 140 108 7 chr11 46367187 46367465 -104416088 - MER33 DNA MER1_type -15 309 4 657 250 29 0 chr11 46367834 46367974 -104415579 + MIR3 SINE MIR 2 145 -63 940 199 16 0 chr11 46368199 46368390 -104415163 + MER20 DNA MER1_type 18 211 -8 207 235 78 0 chr11 46368619 46368670 -104414883 - MIR SINE MIR -2 260 206 432 300 112 60 chr11 46368723 46368956 -104414597 + MIR SINE MIR 7 251 -11 2238 122 3 0 chr11 46369401 46369782 -104413771 - AluSx SINE Alu 0 382 1 562 298 20 28 chr11 46370605 46370860 -104412693 - MLT1L LTR MaLR -362 253 1 802 229 60 5 chr11 46370950 46371151 -104412402 - MIR SINE MIR 0 262 51 473 304 6 25 chr11 46371221 46371379 -104412174 + MIR SINE MIR 106 260 -2 2796 93 3 3 chr11 46371396 46371760 -104411793 - THE1B LTR MaLR 0 364 1 262 346 59 33 chr11 46372778 46372931 -104410622 - MER5B DNA MER1_type -4 174 18 332 256 78 0 chr11 46373632 46373722 -104409831 - MIR SINE MIR 0 262 166 191 217 261 14 chr11 46373807 46373876 -104409677 - MIR SINE MIR -77 185 100 225 159 0 0 chr11 46374581 46374625 -104408928 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 871 161 0 0 chr11 46374766 46374896 -104408657 + FLAM_C SINE Alu 6 135 -8 286 259 56 84 chr11 46374984 46375127 -104408426 - MIR SINE MIR -48 214 76 * 567 356 26 33 chr11 46375122 46375428 -104408125 - L2 LINE L2 -2 3311 3008 490 174 0 12 chr11 46375429 46375515 -104408038 - MER58A DNA MER1_type -22 85 1 609 244 124 45 chr11 46376070 46376312 -104407241 + MIR SINE MIR 1 261 -1 836 247 0 0 chr11 46376347 46376509 -104407044 + AluJb SINE Alu 137 298 -14 276 205 60 60 chr11 46376655 46376738 -104406815 - MIR SINE MIR -62 200 118 2270 239 61 25 chr11 46376741 46377394 -104406159 + L1ME1 LINE L1 5437 6113 -53 293 237 48 26 chr11 46377417 46377512 -104406041 - MIR SINE MIR -81 127 31 2306 105 7 0 chr11 46379388 46379693 -104403860 - AluSx SINE Alu -5 307 1 1160 272 96 51 chr11 46379699 46379809 -104403744 - L1MEd LINE L1 -4641 1669 1565 2050 132 7 0 chr11 46379809 46380116 -104403437 - AluSx SINE Alu 0 309 1 1160 272 96 51 chr11 46380116 46380726 -104402827 - L1MEd LINE L1 -4745 1565 984 1947 146 0 30 chr11 46380726 46381027 -104402526 - AluSx SINE Alu -20 292 1 1160 272 96 51 chr11 46381027 46381541 -104402012 - L1MEd LINE L1 -5326 984 329 1917 128 3 40 chr11 46381728 46381901 -104401652 - AluSq SINE Alu 0 306 148 1838 86 0 16 chr11 46381901 46382144 -104401409 - AluY SINE Alu -17 294 56 1917 128 3 40 chr11 46382144 46382287 -104401266 - AluSq SINE Alu -158 148 1 688 250 149 10 chr11 46382466 46382717 -104400836 - L1ME LINE L1 -431 5731 5434 2381 108 0 0 chr11 46382718 46383024 -104400529 + AluSx SINE Alu 1 306 -6 4134 178 27 27 chr11 46383049 46383502 -104400051 - L1MB2 LINE L1 0 6171 5719 3093 111 39 0 chr11 46383502 46383970 -104399583 + LTR19A LTR ERV1 1 486 0 4134 178 27 27 chr11 46383970 46384192 -104399361 - L1MB2 LINE L1 -452 5719 5492 1869 139 4 0 chr11 46384192 46384480 -104399073 - AluSx SINE Alu 0 313 25 4134 178 27 27 chr11 46384480 46384654 -104398899 - L1MB2 LINE L1 -678 5493 5320 457 192 113 26 chr11 46384625 46384816 -104398737 - L1ME LINE L1 -718 5446 5241 * 2312 107 0 7 chr11 46384969 46385269 -104398284 - AluSx SINE Alu -14 298 1 232 309 59 26 chr11 46385382 46385534 -104398019 - L1MDa LINE L1 -4501 2039 1883 1637 251 134 16 chr11 46385644 46386285 -104397268 - L1MDa LINE L1 -4903 1627 911 1608 199 46 25 chr11 46386302 46386668 -104396885 + MLT1A2 LTR MaLR 1 374 0 389 224 6 0 chr11 46436726 46436887 -104346666 + (CACAA)n Simple_repeat Simple_repeat 4 165 0 203 157 20 0 chr11 46436900 46436951 -104346602 + (CAACC)n Simple_repeat Simple_repeat 3 54 0 974 199 16 21 chr11 46437005 46437196 -104346357 - AluJo SINE Alu -4 308 119 1677 174 3 16 chr11 46437200 46437504 -104346049 - AluJo SINE Alu -12 300 1 311 289 82 10 chr11 46437555 46437652 -104345901 + L2 LINE L2 3136 3239 -33 180 0 0 0 chr11 46437963 46437983 -104345570 + (T)n Simple_repeat Simple_repeat 1 20 0 1972 140 10 13 chr11 46438340 46438648 -104344905 - AluSx SINE Alu -5 307 1 2255 91 7 0 chr11 46438657 46438942 -104344611 - AluSx SINE Alu -19 293 7 202 216 0 0 chr11 46439443 46439480 -104344073 + (CA)n Simple_repeat Simple_repeat 1 37 0 466 270 90 17 chr11 46439699 46439877 -104343676 - MIR3 SINE MIR 0 208 18 731 174 149 31 chr11 46442529 46442690 -104340863 - MER5A DNA MER1_type 0 189 10 2312 306 78 63 chr11 46444620 46445256 -104338297 - HAL1 LINE L1 -274 2233 1608 2310 85 3 0 chr11 46445256 46445550 -104338003 + AluSx SINE Alu 1 295 -17 2312 306 78 63 chr11 46445550 46446699 -104336854 - HAL1 LINE L1 -899 1608 421 2602 181 109 76 chr11 46447015 46447828 -104335725 - L1MC4 LINE L1 -57 7985 7146 760 254 74 63 chr11 46447894 46448513 -104335040 - L1MEd LINE L1 -4890 1229 604 2362 53 0 0 chr11 46448906 46449210 -104334343 + AluY SINE Alu 1 304 0 904 281 44 51 chr11 46449423 46449857 -104333696 - L1MEd LINE L1 -5647 472 42 200 208 0 39 chr11 46450485 46450562 -104332991 + T-rich Low_complexity Low_complexity 1 74 0 273 262 56 65 chr11 46451452 46451559 -104331994 + MIR SINE MIR 81 186 -76 477 168 0 0 chr11 46451685 46451792 -104331761 + CT-rich Low_complexity Low_complexity 2 108 0 709 169 8 0 chr11 46451792 46451910 -104331643 - FRAM SINE Alu -64 112 1 1116 186 9 41 chr11 46451927 46452148 -104331405 - AluJo SINE Alu -59 253 40 288 282 141 13 chr11 46452152 46452301 -104331252 + MIR SINE MIR 94 261 -1 231 193 121 60 chr11 46452419 46452502 -104331051 - MIR SINE MIR -61 201 114 219 353 29 0 chr11 46452517 46452585 -104330968 - MIR3 SINE MIR -47 161 92 245 245 56 70 chr11 46452729 46452872 -104330681 + L1MEd LINE L1 300 440 -5976 237 338 0 0 chr11 46453241 46453315 -104330238 + L1MEd LINE L1 897 970 -5446 585 250 57 26 chr11 46453433 46453754 -104329799 + L1MEd LINE L1 1236 1554 -4862 2268 128 123 5 chr11 46454073 46454456 -104329097 - MSTA LTR MaLR 0 428 1 22 0 0 0 chr11 46456727 46456749 -104326804 + AT_rich Low_complexity Low_complexity 1 22 0 362 351 105 53 chr11 46456851 46457193 -104326360 + L2 LINE L2 2913 3272 0 565 271 90 0 chr11 46457319 46457485 -104326068 - MIR SINE MIR -32 230 50 530 282 82 24 chr11 46458075 46458281 -104325272 - MIR SINE MIR -13 249 32 862 275 50 5 chr11 46459236 46459454 -104324099 + MIR SINE MIR 32 259 -3 2365 89 10 0 chr11 46459853 46460155 -104323398 + AluSp SINE Alu 1 305 -8 490 138 0 0 chr11 46460536 46460623 -104322930 + L1MB3 LINE L1 6090 6176 -7 358 167 77 0 chr11 46460641 46460719 -104322834 + L1MB8 LINE L1 6093 6176 -2 556 212 69 84 chr11 46460942 46461277 -104322276 - HAL1 LINE L1 -1070 1437 1108 606 256 45 56 chr11 46461334 46461689 -104321864 - HAL1 LINE L1 -1412 1095 745 967 262 107 52 chr11 46461711 46462302 -104321251 - HAL1 LINE L1 -1884 623 1 25 0 0 0 chr11 46464841 46464866 -104318687 + AT_rich Low_complexity Low_complexity 1 25 0 341 246 138 23 chr11 46466099 46466229 -104317324 - MIR SINE MIR -37 225 81 557 286 111 9 chr11 46467373 46467590 -104315963 - MIR SINE MIR -4 258 20 417 363 51 34 chr11 46467653 46467887 -104315666 - L3 LINE CR1 -91 1486 1249 568 225 127 105 chr11 46467893 46468420 -104315133 - LTR41 LTR ERVL -6 767 218 225 0 0 0 chr11 46468420 46468445 -104315108 + (CCTG)n Simple_repeat Simple_repeat 4 28 0 568 225 127 105 chr11 46468445 46468668 -104314885 - LTR41 LTR ERVL -555 218 1 212 346 24 39 chr11 46468668 46468795 -104314758 - L3 LINE CR1 -376 1201 1077 923 243 25 13 chr11 46468806 46469045 -104314508 + Charlie1 DNA MER1_type 1 242 -2519 591 175 0 106 chr11 46469025 46469185 -104314368 + Charlie1 DNA MER1_type 2619 2761 0 * 1867 152 42 27 chr11 46469233 46469563 -104313990 + MER1B DNA MER1_type 3 337 0 557 266 130 31 chr11 46469760 46469952 -104313601 + MIR SINE MIR 38 248 -14 183 274 233 14 chr11 46469990 46470063 -104313490 - MIR SINE MIR -96 112 24 782 217 54 20 chr11 46470255 46470458 -104313095 + MER69 DNA AcHobo 41 250 -2276 223 93 47 0 chr11 46471248 46471291 -104312262 + (TATG)n Simple_repeat Simple_repeat 4 48 0 194 224 61 20 chr11 46473073 46473122 -104310431 + MIR3 SINE MIR 137 187 -21 397 322 105 1 chr11 46473352 46473551 -104310002 - MIR SINE MIR -25 237 18 439 326 155 0 chr11 46473697 46473878 -104309675 + MIR SINE MIR 31 239 -23 618 373 39 11 chr11 46474392 46474671 -104308882 + L2 LINE L2 2986 3272 0 1999 219 25 44 chr11 46474758 46475371 -104308182 + L1ME1 LINE L1 5555 6155 -11 1591 212 40 5 chr11 46475411 46475855 -104307698 + L1ME1 LINE L1 4388 4847 -1299 4300 139 28 5 chr11 46475855 46476602 -104306951 + L1MA7 LINE L1 5526 6289 -2 2021 125 0 4 chr11 46476699 46477041 -104306512 + AluSg SINE Alu 1 341 0 879 190 38 35 chr11 46477067 46477355 -104306198 + L1ME1 LINE L1 5377 5686 -480 1433 204 95 13 chr11 46477373 46477761 -104305792 + L1ME1 LINE L1 5747 6166 0 * 2200 201 73 18 chr11 46477758 46478594 -104304959 + L1MDa LINE L1 986 3590 -2950 535 153 16 16 chr11 46478797 46478921 -104304632 - AluY SINE Alu -2 309 186 435 170 0 0 chr11 46478931 46479031 -104304522 + G-rich Low_complexity Low_complexity 1 100 0 631 181 7 0 chr11 46479463 46479601 -104303952 - AluY SINE Alu -172 139 1 1976 252 70 17 chr11 46479661 46479939 -104303614 - L1M4 LINE L1 -2649 3497 3235 1495 178 23 58 chr11 46479939 46480248 -104303305 - AluJo SINE Alu -14 298 1 1976 252 70 17 chr11 46480248 46480739 -104302814 - L1M4 LINE L1 -2911 3235 2687 2894 16 0 0 chr11 46481053 46481363 -104302190 - AluYb8 SINE Alu -8 310 1 245 229 104 21 chr11 46482289 46482385 -104301168 - MIR3 SINE MIR -7 201 98 2332 100 0 10 chr11 46483978 46484288 -104299265 - AluSx SINE Alu -5 307 1 1499 159 80 60 chr11 46484407 46484708 -104298845 + AluJo SINE Alu 1 307 -5 423 171 125 11 chr11 46487532 46487620 -104295933 + L2 LINE L2 3172 3269 -3 5541 167 25 16 chr11 46487736 46488839 -104294714 + L1MD1 LINE L1 4901 6025 -217 2166 100 0 10 chr11 46488839 46489139 -104294414 - AluY SINE Alu -14 297 1 5541 167 25 16 chr11 46489139 46489360 -104294193 + L1MD1 LINE L1 6025 6242 0 310 214 22 0 chr11 46489519 46489608 -104293945 + (TA)n Simple_repeat Simple_repeat 1 91 0 338 265 38 0 chr11 46490941 46491028 -104292525 + MIR3 SINE MIR 77 167 -41 261 312 64 8 chr11 46492594 46492719 -104290834 - MIR3 SINE MIR -13 195 64 344 298 26 18 chr11 46492990 46493104 -104290449 + L2 LINE L2 3184 3298 -15 310 237 0 0 chr11 46494594 46494653 -104288900 + tRNA-Ile-ATT tRNA tRNA 1 59 -18 683 262 161 19 chr11 46495044 46495558 -104287995 - L2 LINE L2 0 3313 2746 1650 192 68 29 chr11 46495621 46496032 -104287521 + MLT1C LTR MaLR 37 463 -4 1218 264 167 9 chr11 46496287 46496825 -104286728 - L2 LINE L2 -627 2687 2065 710 238 152 52 chr11 46497828 46498307 -104285246 - L1ME4a LINE L1 -3 6118 5592 226 167 0 0 chr11 46498311 46498353 -104285200 - L1MC4 LINE L1 -1343 6699 6658 245 321 86 49 chr11 46498425 46498668 -104284885 - L1ME4a LINE L1 -562 5559 5308 329 265 53 30 chr11 46499441 46499573 -104283980 + MIR3 SINE MIR 65 199 -9 2121 109 6 38 chr11 46500416 46500736 -104282817 - AluSx SINE Alu -2 310 1 240 261 155 63 chr11 46502918 46502973 -104280580 + L3b LINE CR1 1296 1345 -238 1993 106 0 81 chr11 46502973 46503294 -104280259 + AluSq SINE Alu 1 295 -18 240 261 155 63 chr11 46503294 46503380 -104280173 + L3b LINE CR1 1345 1450 -133 1437 194 48 7 chr11 46503385 46503658 -104279895 - AluJo SINE Alu -12 300 17 182 367 0 0 chr11 46503867 46503927 -104279626 - L2 LINE L2 -218 3054 2995 2222 101 3 3 chr11 46504586 46504883 -104278670 - AluSc SINE Alu -12 297 1 225 0 0 0 chr11 46504883 46504908 -104278645 + (T)n Simple_repeat Simple_repeat 1 25 0 316 54 0 0 chr11 46504908 46504945 -104278608 - LTR8 LTR ERV1 -107 584 548 1904 176 27 0 chr11 46505030 46505365 -104278188 + MER2 DNA MER2_type 1 344 0 846 208 6 18 chr11 46505602 46505770 -104277783 + FAM SINE Alu 1 166 -9 421 227 45 0 chr11 46506085 46506173 -104277380 - AluJo SINE Alu -100 212 121 298 320 0 37 chr11 46506456 46506616 -104276937 + MIR SINE MIR 3 154 -73 187 196 43 0 chr11 46506636 46506682 -104276871 - L2 LINE L2 0 3313 3266 443 250 23 23 chr11 46507679 46507811 -104275742 + MIR SINE MIR 20 151 -111 735 225 97 18 chr11 46507983 46508210 -104275343 + MIR SINE MIR 15 259 -3 202 139 23 0 chr11 46508735 46508778 -104274775 + L2 LINE L2 3228 3271 -1 225 0 0 0 chr11 46508810 46508835 -104274718 + (T)n Simple_repeat Simple_repeat 1 25 0 272 311 22 11 chr11 46511015 46511105 -104272448 - MIR3 SINE MIR -5 203 113 26 0 0 0 chr11 46511556 46511582 -104271971 + AT_rich Low_complexity Low_complexity 1 26 0 2255 107 0 16 chr11 46512906 46513214 -104270339 - AluSq SINE Alu -10 303 1 219 36 0 0 chr11 46514625 46514653 -104268900 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1903 168 3 7 chr11 46514656 46514959 -104268594 - AluJo SINE Alu -10 302 1 2308 96 3 0 chr11 46515450 46515741 -104267812 + AluY SINE Alu 1 292 -19 209 298 0 53 chr11 46515750 46515844 -104267709 - L2 LINE L2 -40 3273 3185 203 270 79 22 chr11 46515995 46516084 -104267469 + MIR SINE MIR 98 191 -71 2414 273 103 20 chr11 46517435 46518604 -104264949 - L2 LINE L2 -1 3312 2031 4249 231 131 20 chr11 46518615 46519864 -104263689 + L1ME1 LINE L1 2027 3136 -3097 1809 156 26 66 chr11 46519864 46520242 -104263311 + MLT1A1 LTR MaLR 1 363 -2 4249 231 131 20 chr11 46520242 46521105 -104262448 + L1ME1 LINE L1 3136 6039 -194 218 388 41 0 chr11 46521262 46521360 -104262193 - L2 LINE L2 -17 3255 3154 1564 178 84 39 chr11 46522058 46522417 -104261136 + MLT1B LTR MaLR 16 390 0 301 337 29 35 chr11 46522633 46522805 -104260748 - MIR SINE MIR -56 206 36 231 36 0 0 chr11 46522953 46522981 -104260572 + (CA)n Simple_repeat Simple_repeat 2 29 0 26 0 0 0 chr11 46526406 46526432 -104257121 + AT_rich Low_complexity Low_complexity 1 26 0 225 245 57 38 chr11 46527833 46527939 -104255614 + MIR3 SINE MIR 94 201 -7 331 256 71 48 chr11 46532573 46532767 -104250786 - MIR3 SINE MIR -56 206 9 223 202 176 59 chr11 46533841 46533960 -104249593 - L2 LINE L2 -214 3058 2926 205 356 78 0 chr11 46534891 46535006 -104248547 - L2 LINE L2 -3 3269 3146 207 204 0 20 chr11 46535101 46535150 -104248403 + MIR SINE MIR 82 129 -79 239 295 53 11 chr11 46535150 46535245 -104248308 - L2 LINE L2 -16 3297 3199 1816 154 0 13 chr11 46535622 46535933 -104247620 + AluJo SINE Alu 1 307 -5 180 0 0 0 chr11 46536290 46536310 -104247243 + (A)n Simple_repeat Simple_repeat 1 20 0 269 314 102 8 chr11 46536621 46536739 -104246814 - L2 LINE L2 -33 3239 3111 922 203 10 36 chr11 46536748 46536769 -104246784 + AluJo SINE Alu 116 136 -176 1602 172 3 31 chr11 46536769 46537089 -104246464 + AluJo SINE Alu 1 311 -1 922 203 10 36 chr11 46537089 46537259 -104246294 + AluJo SINE Alu 136 302 -10 182 176 20 0 chr11 46537321 46537372 -104246181 + (AGTTG)n Simple_repeat Simple_repeat 3 54 0 389 224 6 0 chr11 46537385 46537546 -104246007 + (TTGTG)n Simple_repeat Simple_repeat 4 165 0 228 242 16 0 chr11 46537553 46537615 -104245938 + (AGTTG)n Simple_repeat Simple_repeat 2 64 0 454 207 11 0 chr11 46537624 46537798 -104245755 + (TTGTG)n Simple_repeat Simple_repeat 4 179 0 261 233 41 0 chr11 46537801 46537874 -104245679 + (GGTTG)n Simple_repeat Simple_repeat 3 78 0 264 303 83 9 chr11 46537896 46538005 -104245548 - L2 LINE L2 -231 3082 2966 455 234 193 0 chr11 46538879 46539024 -104244529 + MIR3 SINE MIR 30 202 -6 2124 152 12 26 chr11 46539741 46540083 -104243470 - MER1B DNA MER1_type 0 337 1 522 256 56 50 chr11 46540083 46540263 -104243290 + MIR SINE MIR 17 197 -65 184 333 146 0 chr11 46541309 46541405 -104242148 - MIR3 SINE MIR -11 197 88 205 310 172 41 chr11 46542282 46542427 -104241126 - L3 LINE CR1 -200 1377 1214 268 311 78 64 chr11 46542745 46543028 -104240525 + L2 LINE L2 2985 3271 -1 267 365 46 57 chr11 46543957 46544220 -104239333 - L3 LINE CR1 -102 1475 1216 202 250 0 44 chr11 46544948 46545016 -104238537 - L2 LINE L2 -64 3249 3185 672 201 6 6 chr11 46545107 46545271 -104238282 + L1MC3 LINE L1 7461 7624 -161 2110 236 87 36 chr11 46545276 46546059 -104237494 + L1ME1 LINE L1 5314 6136 -30 2142 118 0 10 chr11 46546059 46546363 -104237190 + AluSq SINE Alu 1 301 -12 361 289 77 19 chr11 46546431 46546639 -104236914 + L1ME LINE L1 5583 5802 -319 352 210 78 132 chr11 46546641 46546666 -104236887 + L2 LINE L2 3120 3145 -168 1935 145 3 0 chr11 46546666 46546956 -104236597 - AluSx SINE Alu -16 296 6 352 210 78 132 chr11 46546956 46547135 -104236418 + L2 LINE L2 3145 3313 0 356 257 43 14 chr11 46547485 46547625 -104235928 + MER53 DNA DNA 36 179 -10 288 91 0 0 chr11 46547996 46548040 -104235513 + (CA)n Simple_repeat Simple_repeat 1 44 0 2217 97 0 0 chr11 46548062 46548361 -104235192 - AluSq SINE Alu -14 299 1 284 336 142 14 chr11 46548401 46548817 -104234736 - L1ME LINE L1 -268 5853 5385 233 368 61 31 chr11 46549824 46549987 -104233566 - MIR SINE MIR -45 217 50 190 0 32 32 chr11 46550386 46550417 -104233136 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 243 306 28 0 chr11 46550503 46550575 -104232978 - MIR SINE MIR -116 146 73 678 169 23 15 chr11 46550580 46550710 -104232843 + FLAM_C SINE Alu 3 133 0 269 162 0 122 chr11 46550995 46551069 -104232484 + L1MC4 LINE L1 7814 7878 -164 716 156 0 0 chr11 46551069 46551178 -104232375 - AluSx SINE Alu -8 302 194 821 85 0 0 chr11 46551178 46551284 -104232269 - AluSx SINE Alu -206 106 1 398 234 42 22 chr11 46551387 46551521 -104232032 + L1MC4 LINE L1 7880 8042 0 533 241 32 19 chr11 46552497 46552658 -104230895 - MIR SINE MIR -65 197 34 284 248 141 40 chr11 46553059 46553208 -104230345 - MIR3 SINE MIR -39 169 6 220 310 56 14 chr11 46553399 46553470 -104230083 + MIR SINE MIR 13 86 -176 * 362 306 182 10 chr11 46553468 46553677 -104229876 - L2 LINE L2 0 3272 3028 474 286 84 28 chr11 46553824 46554002 -104229551 + MIR SINE MIR 63 250 -12 1776 137 18 4 chr11 46554495 46554801 -104228752 - AluSx SINE Alu 0 310 1 1911 142 3 6 chr11 46554900 46555211 -104228342 - AluSg SINE Alu 0 310 1 1572 161 4 50 chr11 46555333 46555613 -104227940 - AluJo SINE Alu -45 267 1 1624 160 18 21 chr11 46555908 46556190 -104227363 + AluJo SINE Alu 1 281 -31 793 73 8 8 chr11 46556194 46556317 -104227236 + (GGAA)n Simple_repeat Simple_repeat 2 124 0 925 101 31 0 chr11 46556395 46556524 -104227029 + AluSq/x SINE Alu 1 133 -180 188 184 0 0 chr11 46557259 46557297 -104226256 + MIR SINE MIR 117 154 -108 821 235 53 37 chr11 46557862 46557918 -104225635 - MIR SINE MIR -1 261 207 2201 88 0 3 chr11 46557918 46558245 -104225308 - AluSq SINE Alu 0 326 1 821 235 53 37 chr11 46558245 46558430 -104225123 - MIR SINE MIR -55 207 15 1885 230 43 13 chr11 46559205 46559762 -104223791 + L1M4 LINE L1 4792 5365 -781 1472 145 43 46 chr11 46559762 46559819 -104223734 + L1MB4 LINE L1 5878 5934 -246 2387 95 0 0 chr11 46559819 46560124 -104223429 + AluSq SINE Alu 1 305 -8 1472 145 43 46 chr11 46560124 46560369 -104223184 + L1MB4 LINE L1 5934 6179 -1 207 143 0 0 chr11 46560453 46560488 -104223065 + L2 LINE L2 2722 2756 -558 2036 119 7 0 chr11 46560527 46560841 -104222712 + AluJb SINE Alu 1 316 0 338 342 26 13 chr11 46560900 46561055 -104222498 + L2 LINE L2 2889 3045 -227 182 329 85 0 chr11 46561255 46561337 -104222216 + MIR SINE MIR 98 186 -76 355 164 64 82 chr11 46562038 46562148 -104221405 - L2 LINE L2 0 3313 3206 2417 67 3 0 chr11 46562445 46562745 -104220808 - AluY SINE Alu -5 306 6 686 271 28 17 chr11 46562866 46563070 -104220483 + MIR SINE MIR 43 245 -17 181 308 0 0 chr11 46563133 46563172 -104220381 - MIR SINE MIR -107 155 117 190 250 0 0 chr11 46563416 46563456 -104220097 + L2 LINE L2 3126 3165 -107 234 335 110 53 chr11 46564032 46564241 -104219312 + L2 LINE L2 3034 3254 -18 195 362 0 14 chr11 46564252 46564321 -104219232 + MIR3 SINE MIR 120 187 -21 199 211 200 11 chr11 46564810 46564905 -104218648 + MIR SINE MIR 34 146 -62 250 212 152 10 chr11 46565586 46565685 -104217868 + MIR SINE MIR 34 146 -62 279 274 0 34 chr11 46569567 46569684 -104213869 + L1ME3 LINE L1 6036 6148 -14 212 258 75 43 chr11 46571698 46571791 -104211762 - MIR SINE MIR -107 155 60 492 279 0 0 chr11 46572257 46572429 -104211124 + (TG)n Simple_repeat Simple_repeat 1 172 0 207 191 0 73 chr11 46573587 46573697 -104209856 + (CCGCG)n Simple_repeat Simple_repeat 5 106 0 189 94 0 0 chr11 46574174 46574206 -104209347 + (CTG)n Simple_repeat Simple_repeat 3 34 0 475 147 43 0 chr11 46574663 46574779 -104208774 + CT-rich Low_complexity Low_complexity 1 121 0 241 270 0 27 chr11 46574909 46574983 -104208570 + C-rich Low_complexity Low_complexity 5 76 0 300 308 65 0 chr11 46575858 46575965 -104207588 - MIR SINE MIR -80 182 69 306 372 62 22 chr11 46576681 46576955 -104206598 + L2 LINE L2 2869 3153 -119 2039 90 3 28 chr11 46577023 46577350 -104206203 + AluY SINE Alu 1 320 0 185 238 381 0 chr11 46577542 46577626 -104205927 + L2 LINE L2 3157 3272 0 418 220 300 40 chr11 46578900 46579127 -104204426 + L2 LINE L2 3026 3311 -2 301 160 53 0 chr11 46579267 46579342 -104204211 + CT-rich Low_complexity Low_complexity 2 80 0 893 130 5 27 chr11 46579350 46579534 -104204019 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 2201 129 0 0 chr11 46579544 46579854 -104203699 - AluY SINE Alu 0 311 2 556 278 59 12 chr11 46580333 46580502 -104203051 - MIR SINE MIR -77 185 9 579 229 34 43 chr11 46582949 46583119 -104200434 + MIR SINE MIR 32 199 -62 202 395 31 6 chr11 46583498 46583660 -104199893 - MIR SINE MIR -81 181 16 195 255 0 0 chr11 46583924 46583971 -104199582 + L2 LINE L2 3213 3259 -13 22 0 0 0 chr11 46584554 46584576 -104198977 + GC_rich Low_complexity Low_complexity 1 22 0 474 276 92 17 chr11 46587179 46587353 -104196200 + MIR3 SINE MIR 18 204 -4 202 216 0 0 chr11 46587576 46587613 -104195940 + (TG)n Simple_repeat Simple_repeat 1 37 0 2242 93 7 0 chr11 46588109 46588387 -104195166 + AluSx SINE Alu 2 281 -31 443 246 99 7 chr11 46588799 46588941 -104194612 + MIR SINE MIR 34 188 -74 445 80 67 0 chr11 46589346 46589421 -104194132 - L1MB5 LINE L1 0 6174 6095 1136 222 109 54 chr11 46589907 46590349 -104193204 - MLT1C LTR MaLR 0 467 2 181 303 160 25 chr11 46591473 46591592 -104191961 + L2 LINE L2 2953 3087 -185 489 229 137 17 chr11 46592648 46592823 -104190730 + MIR SINE MIR 66 261 -1 326 280 154 28 chr11 46593615 46593797 -104189756 + L2 LINE L2 3108 3312 -1 * 375 300 52 36 chr11 46593783 46593984 -104189569 - MIR SINE MIR -56 206 3 521 285 64 12 chr11 46594107 46594279 -104189274 - MIR SINE MIR -58 204 24 222 91 0 0 chr11 46594531 46594564 -104188989 + (TG)n Simple_repeat Simple_repeat 2 34 0 200 344 11 0 chr11 46595022 46595115 -104188438 + (TG)n Simple_repeat Simple_repeat 1 94 0 368 204 26 35 chr11 46595504 46595617 -104187936 + MIR SINE MIR 21 132 -130 255 261 0 14 chr11 46596635 46596704 -104186849 + C-rich Low_complexity Low_complexity 3 70 0 925 75 0 0 chr11 46597161 46597294 -104186259 + L1PA13 LINE L1 6027 6159 -4 485 314 93 5 chr11 46597809 46598003 -104185550 - MIR SINE MIR -45 217 7 1418 208 123 14 chr11 46598705 46599119 -104184434 + MLT1C LTR MaLR 7 465 -2 344 297 63 0 chr11 46599149 46599260 -104184293 + MIR SINE MIR 89 206 -56 1469 179 63 11 chr11 46600047 46600338 -104183215 - AluJb SINE Alu 0 305 1 212 295 53 11 chr11 46600715 46600810 -104182743 + L2 LINE L2 3199 3297 -16 200 182 0 23 chr11 46600810 46600854 -104182699 - MIR SINE MIR -79 129 87 1517 70 22 26 chr11 46601428 46601658 -104181895 - L1PA10 LINE L1 -1 6167 5939 410 255 0 10 chr11 46601724 46601826 -104181727 - MIR SINE MIR -101 161 61 384 262 74 23 chr11 46602422 46602620 -104180933 + MIR SINE MIR 48 260 -2 207 204 0 0 chr11 46603506 46603550 -104180003 + CT-rich Low_complexity Low_complexity 2 45 0 245 29 29 0 chr11 46604183 46604217 -104179336 + (TTA)n Simple_repeat Simple_repeat 2 36 0 192 125 0 0 chr11 46606092 46606124 -104177429 + (T)n Simple_repeat Simple_repeat 1 32 0 2146 122 0 17 chr11 46608288 46608583 -104174970 - AluJb SINE Alu -22 290 1 240 59 0 0 chr11 46609844 46609878 -104173675 + (TTAA)n Simple_repeat Simple_repeat 3 36 0 2222 113 0 0 chr11 46609878 46610161 -104173392 - AluSx SINE Alu -29 283 1 185 229 14 57 chr11 46610255 46610325 -104173228 + MIR SINE MIR 183 249 -13 189 107 0 0 chr11 46610532 46610560 -104172993 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 1596 153 71 0 chr11 46610569 46610824 -104172729 - AluJb SINE Alu -39 273 1 232 343 9 9 chr11 46610852 46610960 -104172593 + HAL1b LINE L1 1196 1303 -45 2193 115 3 13 chr11 46611292 46611316 -104172237 - AluSx SINE Alu -11 301 278 243 0 0 0 chr11 46611316 46611343 -104172210 + (TG)n Simple_repeat Simple_repeat 1 27 0 2193 115 3 13 chr11 46611343 46611622 -104171931 - AluSx SINE Alu -34 278 1 307 283 131 10 chr11 46612006 46612105 -104171448 + MIR SINE MIR 36 146 -62 298 235 15 0 chr11 46612280 46612348 -104171205 - L2 LINE L2 -212 3060 2992 320 294 194 17 chr11 46612703 46612883 -104170670 + MIR SINE MIR 20 231 -31 353 318 132 16 chr11 46613738 46613927 -104169626 - MIR SINE MIR -4 258 48 535 286 27 27 chr11 46614536 46614721 -104168832 + L2 LINE L2 1146 1330 -1984 6823 86 1 18 chr11 46616467 46616551 -104167002 - L1P LINE L1 -4214 1932 1848 2158 122 23 3 chr11 46616551 46616855 -104166698 + AluY SINE Alu 2 311 0 6823 86 1 18 chr11 46616855 46617792 -104165761 - L1P LINE L1 -4298 1848 928 9588 121 48 9 chr11 46617892 46619399 -104164154 - L1P LINE L1 -4569 1577 11 810 123 0 9 chr11 46619416 46619530 -104164023 - FLAM_C SINE Alu -18 125 13 1802 186 3 6 chr11 46619564 46619876 -104163677 - AluSx SINE Alu 0 312 2 308 207 0 0 chr11 46620038 46620096 -104163457 - MLT1B LTR MaLR -6 384 327 1259 183 126 19 chr11 46621338 46621462 -104162091 + AluJo SINE Alu 3 112 -200 207 0 0 0 chr11 46621462 46621485 -104162068 + (TTAAA)n Simple_repeat Simple_repeat 3 25 0 1259 183 126 19 chr11 46621485 46621623 -104161930 + AluJo SINE Alu 112 293 -19 604 242 66 16 chr11 46621643 46621825 -104161728 - MIR SINE MIR -50 212 22 529 260 24 0 chr11 46622211 46622338 -104161215 + MIR SINE MIR 68 197 -65 611 316 107 8 chr11 46622589 46622852 -104160701 + MLT1K LTR MaLR 42 330 -258 501 216 23 76 chr11 46623028 46623142 -104160411 - MER103 DNA DNA -3 163 59 2361 75 0 46 chr11 46623142 46623448 -104160105 - AluSp SINE Alu -21 292 1 501 216 23 76 chr11 46623448 46623504 -104160049 - MER103 DNA DNA -107 59 2 391 174 224 0 chr11 46623510 46623608 -104159945 - L2 LINE L2 -1 3312 3193 1185 134 143 5 chr11 46624520 46624729 -104158824 - AluSq SINE Alu -75 238 1 1257 283 100 40 chr11 46625168 46625719 -104157834 + MLT1E LTR MaLR 1 584 -9 443 265 22 15 chr11 46625725 46625861 -104157692 - MIR3 SINE MIR -52 156 20 193 281 202 0 chr11 46625933 46626047 -104157506 + MIR SINE MIR 113 249 -13 181 125 31 0 chr11 46626732 46626764 -104156789 - MIR SINE MIR -112 150 118 866 318 67 13 chr11 46626800 46627263 -104156290 - L1ME3A LINE L1 -218 5952 5465 336 333 51 6 chr11 46627443 46627599 -104155954 + L2 LINE L2 3151 3313 0 636 262 53 34 chr11 46628350 46628556 -104154997 + MIR SINE MIR 8 217 -45 420 315 8 0 chr11 46628589 46628716 -104154837 - L2 LINE L2 0 3272 3145 231 36 0 0 chr11 46630030 46630058 -104153495 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 282 244 13 39 chr11 46630265 46630343 -104153210 - MIR3 SINE MIR -40 168 93 310 188 38 25 chr11 46630414 46630494 -104153059 + MIR SINE MIR 58 138 -124 452 206 122 0 chr11 46631165 46631272 -104152281 + L2 LINE L2 3153 3272 0 248 320 203 0 chr11 46631995 46632148 -104151405 - MIR SINE MIR 0 262 79 * 346 286 10 0 chr11 46632136 46632234 -104151319 + MIR3 SINE MIR 58 156 -52 364 318 0 7 chr11 46632575 46632726 -104150827 + GA-rich Low_complexity Low_complexity 1 150 0 327 331 0 7 chr11 46632765 46632916 -104150637 + GA-rich Low_complexity Low_complexity 2 151 0 369 221 63 0 chr11 46633513 46633608 -104149945 - MIR SINE MIR -14 248 148 260 240 180 30 chr11 46633655 46633755 -104149798 - MIR SINE MIR -62 146 32 648 287 118 25 chr11 46634207 46634573 -104148980 - MLT1L LTR MaLR 0 615 216 252 342 11 88 chr11 46634727 46634987 -104148566 + MLT1K LTR MaLR 192 431 -157 306 242 134 60 chr11 46635421 46635570 -104147983 - MIR SINE MIR 0 262 103 1355 177 107 10 chr11 46635712 46636011 -104147542 - MER2 DNA MER2_type -2 343 16 1999 256 59 28 chr11 46636275 46636850 -104146703 - MLT1E LTR MaLR 0 593 1 2635 92 22 30 chr11 46636926 46637328 -104146225 + MLT2A1 LTR ERVL 1 399 -45 302 100 0 20 chr11 46637541 46637591 -104145962 + MLT2A1 LTR ERVL 405 453 0 8550 64 4 15 chr11 46637591 46638718 -104144835 + HERVL-A1 LTR ERVL 1 1115 -4539 2117 74 3 0 chr11 46638823 46639106 -104144447 + HERVL-A1 LTR ERVL 1096 1379 -4275 2370 127 49 42 chr11 46639475 46639900 -104143653 - MSTA LTR MaLR 0 428 1 832 246 170 44 chr11 46640126 46640532 -104143021 - L2 LINE L2 0 3313 2857 202 211 0 0 chr11 46640634 46640672 -104142881 + L2 LINE L2 3217 3254 -18 296 238 24 95 chr11 46641054 46641180 -104142373 - MIR SINE MIR -51 211 95 510 96 0 0 chr11 46641722 46641795 -104141758 + (TCCA)n Simple_repeat Simple_repeat 2 74 0 316 309 161 18 chr11 46642235 46642403 -104141150 + L2 LINE L2 2687 2878 -436 422 196 181 53 chr11 46642460 46642593 -104140960 + MER63 DNA MER1_type 2 777 -59 715 297 23 0 chr11 46642642 46642871 -104140682 + MIR SINE MIR 16 251 -11 263 245 66 94 chr11 46643796 46643902 -104139651 + L2 LINE L2 3133 3235 -37 229 176 255 0 chr11 46644049 46644100 -104139453 + L2 LINE L2 3227 3290 -23 327 283 10 116 chr11 46644494 46644592 -104138961 + MIR SINE MIR 4 111 -151 1739 158 42 11 chr11 46644592 46644876 -104138677 - AluJb SINE Alu -19 293 1 327 283 10 116 chr11 46644876 46644890 -104138663 + MIR SINE MIR 111 125 -137 1867 183 0 10 chr11 46644890 46645202 -104138351 - AluJo SINE Alu -3 309 1 327 283 10 116 chr11 46645202 46645286 -104138267 + MIR SINE MIR 125 180 -82 385 296 16 8 chr11 46645405 46645530 -104138023 + MIR SINE MIR 27 152 -110 399 343 36 28 chr11 46646093 46646341 -104137212 + L2 LINE L2 2838 3087 -185 211 327 0 0 chr11 46646462 46646514 -104137039 + L2 LINE L2 3148 3199 -73 337 307 129 82 chr11 46646567 46647007 -104136546 - L2 LINE L2 0 3272 2812 936 167 8 96 chr11 46647029 46647269 -104136284 + MER20 DNA MER1_type 1 219 0 235 175 18 0 chr11 46647430 46647487 -104136066 + L1MB3 LINE L1 6096 6153 -30 521 295 90 0 chr11 46647805 46647961 -104135592 + MIR SINE MIR 28 197 -65 818 192 13 0 chr11 46647980 46648131 -104135422 + FRAM SINE Alu 1 153 -23 591 266 101 11 chr11 46648188 46648376 -104135177 + MIR SINE MIR 56 260 -2 218 277 15 15 chr11 46648812 46648877 -104134676 + CT-rich Low_complexity Low_complexity 2 66 0 351 270 68 14 chr11 46649820 46649968 -104133585 - L3 LINE CR1 -222 1355 1200 371 306 35 35 chr11 46650223 46650393 -104133160 + L2 LINE L2 2914 3083 -189 301 348 118 0 chr11 46650607 46650742 -104132811 - MIR SINE MIR -36 226 76 2462 74 7 0 chr11 46650745 46651042 -104132511 - AluSp SINE Alu -14 299 1 191 311 0 0 chr11 46651947 46651992 -104131561 + L2 LINE L2 3250 3294 -19 306 0 0 0 chr11 46652070 46652104 -104131449 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 310 287 38 32 chr11 46652308 46652465 -104131088 - MIR SINE MIR -16 246 89 352 260 98 0 chr11 46652469 46652592 -104130961 + MLT1I LTR MaLR 1 135 -274 543 286 35 18 chr11 46652618 46652789 -104130764 + MLT1I LTR MaLR 228 401 -8 254 273 52 13 chr11 46652796 46652873 -104130680 - MIR SINE MIR -172 90 11 1981 153 3 10 chr11 46653129 46653437 -104130116 + AluJb SINE Alu 4 309 -3 292 250 156 23 chr11 46653444 46653572 -104129981 - MIR SINE MIR -25 237 93 686 207 35 27 chr11 46653754 46653943 -104129610 - L1MD2 LINE L1 -1 8041 6261 1588 236 62 2 chr11 46653952 46654384 -104129169 - L1MC4 LINE L1 -381 7661 7204 1853 215 43 5 chr11 46654680 46655056 -104128497 - MLT1B LTR MaLR 0 390 1 233 186 51 17 chr11 46656217 46656276 -104127277 + MIR3 SINE MIR 15 75 -133 452 342 60 82 chr11 46656362 46657036 -104126517 + L2 LINE L2 2612 3272 0 373 295 45 0 chr11 46657244 46657356 -104126197 + MIR SINE MIR 129 245 -17 180 250 50 0 chr11 46657324 46657364 -104126189 + L2 LINE L2 3218 3259 -13 * 2391 95 0 3 chr11 46657384 46657689 -104125864 - AluSc SINE Alu -5 304 1 1895 159 7 3 chr11 46657792 46658087 -104125466 - AluSx SINE Alu -16 296 1 541 243 179 75 chr11 46658161 46658565 -104124988 - MLT1J LTR MaLR -19 427 2 223 326 61 0 chr11 46658585 46658683 -104124870 + L2 LINE L2 3210 3313 0 966 200 6 4 chr11 46658761 46658960 -104124593 + MIR SINE MIR 61 257 -5 2112 146 0 0 chr11 46659773 46660068 -104123485 + AluSx SINE Alu 1 295 -17 30747 95 11 11 chr11 46660081 46665578 -104117975 + L1PA7 LINE L1 599 6098 -56 945 122 0 0 chr11 46665726 46665849 -104117704 - AluSq/x SINE Alu -189 123 1 196 241 19 19 chr11 46666045 46666099 -104117454 - L2 LINE L2 -304 2968 2915 2559 34 10 0 chr11 46666108 46666402 -104117151 + AluY SINE Alu 1 297 -14 1565 179 55 97 chr11 46667113 46667273 -104116280 + MER63B DNA MER1_type 1 166 -896 1580 106 0 0 chr11 46667273 46667501 -104116052 + AluSg/x SINE Alu 86 313 0 1565 179 55 97 chr11 46667501 46667791 -104115762 + MER63B DNA MER1_type 166 433 -3 405 227 200 20 chr11 46668434 46668584 -104114969 - MIR SINE MIR -3 259 83 471 283 3 2 chr11 46668864 46669005 -104114548 + MIR SINE MIR 19 157 -61 251 368 37 6 chr11 46669845 46670008 -104113545 - MIR3 SINE MIR -36 172 5 208 268 14 42 chr11 46670463 46670534 -104113019 + MER5A DNA MER1_type 50 118 -71 225 245 167 10 chr11 46670757 46670859 -104112694 + MIR3 SINE MIR 86 203 -5 389 20 20 0 chr11 46671248 46671298 -104112255 + (TG)n Simple_repeat Simple_repeat 2 52 0 2083 142 0 13 chr11 46671347 46671649 -104111904 + AluSx SINE Alu 1 298 -14 467 199 57 71 chr11 46671656 46671797 -104111756 + MIR SINE MIR 124 262 0 258 32 0 0 chr11 46671807 46671838 -104111715 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 2072 106 22 0 chr11 46671840 46672115 -104111438 - AluSp SINE Alu -32 281 1 318 219 42 52 chr11 46672209 46672401 -104111152 + MER113 DNA MER1_type? 53 242 -279 1022 193 0 6 chr11 46672447 46672623 -104110930 + AluJo SINE Alu 122 296 -16 350 217 209 31 chr11 46672646 46672775 -104110778 + L1MD2 LINE L1 6194 6345 -14 618 257 131 9 chr11 46672809 46673031 -104110522 + MER113 DNA MER1_type? 273 521 0 284 333 76 9 chr11 46673231 46673336 -104110217 + MIR SINE MIR 36 147 -61 606 227 9 0 chr11 46673462 46673572 -104109981 + MER81 DNA DNA 2 112 -2 1128 148 7 76 chr11 46673589 46673880 -104109673 + MER33 DNA MER1_type 37 307 -17 439 280 115 19 chr11 46675270 46675427 -104108126 + MIR3 SINE MIR 28 199 -9 495 267 33 71 chr11 46676217 46676427 -104107126 + L2 LINE L2 3104 3305 -8 1108 257 56 45 chr11 46676678 46677122 -104106431 - LTR33 LTR ERVL -72 449 1 981 232 80 48 chr11 46677171 46677670 -104105883 - MLT1G LTR MaLR -36 531 7 207 306 14 28 chr11 46677877 46677949 -104105604 - MIR SINE MIR -59 149 79 786 286 72 51 chr11 46678496 46678870 -104104683 + MER115 DNA AcHobo 54 435 -258 837 139 134 32 chr11 46679132 46679319 -104104234 - MSTA LTR MaLR -2 426 221 535 165 174 0 chr11 46679672 46679781 -104103772 - MIR SINE MIR -88 174 47 181 262 19 97 chr11 46680030 46680133 -104103420 + L2 LINE L2 3167 3261 -11 2662 135 39 11 chr11 46680661 46681127 -104102426 - L1MB2 LINE L1 0 6171 5693 361 291 19 0 chr11 46681191 46681294 -104102259 - MIR SINE MIR -109 153 49 383 233 11 22 chr11 46681442 46681532 -104102021 + MIR SINE MIR 4 92 -170 227 133 0 44 chr11 46681532 46681577 -104101976 + MER117 DNA MER1_type 117 159 -38 1715 174 10 10 chr11 46681959 46682439 -104101114 - AluJb SINE Alu 0 312 14 216 245 19 0 chr11 46683323 46683376 -104100177 + G-rich Low_complexity Low_complexity 2 55 0 304 295 103 58 chr11 46683508 46683664 -104099889 - MIR3 SINE MIR -23 185 23 417 297 101 72 chr11 46684157 46684554 -104098999 + MLT1K LTR MaLR 121 534 -54 480 35 0 0 chr11 46684554 46684612 -104098941 + (CTATT)n Simple_repeat Simple_repeat 2 59 0 417 297 101 72 chr11 46684612 46684669 -104098884 + MLT1K LTR MaLR 534 588 0 789 205 6 93 chr11 46685484 46685691 -104097862 - MIR SINE MIR -54 208 18 417 279 60 0 chr11 46686698 46686832 -104096721 + MIR3 SINE MIR 54 193 -15 422 316 94 19 chr11 46686958 46687170 -104096383 - MIR SINE MIR 0 262 35 239 263 17 143 chr11 46687810 46687985 -104095568 + LTR67 LTR ERVL 37 189 -368 672 219 89 24 chr11 46688298 46688467 -104095086 - MIR SINE MIR -70 192 13 1038 167 0 0 chr11 46688483 46688645 -104094908 + FRAM SINE Alu 1 162 -14 2166 169 129 24 chr11 46688648 46689105 -104094448 + MLT1D LTR MaLR 1 505 0 236 320 0 0 chr11 46689183 46689261 -104094292 + L2 LINE L2 3195 3272 0 2350 107 0 0 chr11 46689880 46690179 -104093374 - AluSq SINE Alu -14 299 1 465 140 54 0 chr11 46690310 46690403 -104093150 + L1MD3 LINE L1 7898 7995 0 253 243 162 0 chr11 46690543 46690617 -104092936 + L2 LINE L2 3141 3226 -46 461 266 158 40 chr11 46690617 46690794 -104092759 - MIR SINE MIR -31 231 34 559 266 85 16 chr11 46690837 46691025 -104092528 + MIR SINE MIR 36 236 -26 357 24 0 0 chr11 46691070 46691112 -104092441 + (ATG)n Simple_repeat Simple_repeat 1 42 0 640 297 160 33 chr11 46692277 46693032 -104090521 - L2 LINE L2 -109 3204 2354 537 144 0 0 chr11 46693090 46693180 -104090373 + L1 LINE L1 5194 5283 -863 6238 72 2 0 chr11 46693198 46694000 -104089553 + THE1A-int LTR MaLR 777 1580 0 2535 110 6 8 chr11 46694000 46694356 -104089197 + THE1A LTR MaLR 1 355 0 681 274 49 63 chr11 46694357 46694788 -104088765 - L1MC5 LINE L1 -62 7899 7475 1948 154 0 61 chr11 46694788 46695164 -104088389 + MLT1A1 LTR MaLR 9 361 -4 344 303 6 37 chr11 46695167 46695329 -104088224 - L1MC5 LINE L1 -491 7470 7314 298 233 17 0 chr11 46696360 46696420 -104087133 - L2 LINE L2 -63 3209 3149 387 319 1 29 chr11 46696721 46696859 -104086694 - MIR SINE MIR -55 153 18 316 289 94 0 chr11 46696868 46696996 -104086557 - MIR3 SINE MIR -45 163 24 469 288 12 6 chr11 46697524 46697684 -104085869 - MER103 DNA DNA -2 164 4 209 316 126 0 chr11 46697797 46697892 -104085661 + L3 LINE CR1 1178 1284 -293 596 231 0 31 chr11 46698029 46698159 -104085394 + AluJb SINE Alu 2 127 -185 378 242 84 33 chr11 46698173 46698388 -104085165 + L1ME4a LINE L1 5600 5825 -296 1812 130 0 75 chr11 46698391 46698767 -104084786 + AluSx SINE Alu 1 353 0 181 329 137 0 chr11 46698888 46698961 -104084592 - MER5C DNA MER1_type -1 323 241 249 252 92 0 chr11 46699005 46699136 -104084417 + L1ME4a LINE L1 5968 6110 -11 2062 84 9 69 chr11 46699136 46699316 -104084237 - L1MA2 LINE L1 0 6304 6153 2248 116 9 35 chr11 46699316 46699635 -104083918 - AluSx SINE Alu 0 312 2 2062 84 9 69 chr11 46699635 46699801 -104083752 - L1MA2 LINE L1 -151 6153 5979 430 274 30 49 chr11 46700834 46700998 -104082555 - MIR SINE MIR -82 180 20 229 278 41 55 chr11 46701365 46701478 -104082075 + MIR3 SINE MIR 38 159 -49 487 290 6 35 chr11 46701488 46701657 -104081896 + MER5A DNA MER1_type 26 189 0 782 256 105 84 chr11 46702439 46702904 -104080649 - MER77 LTR ERV1 -7 598 194 * 2310 82 65 54 chr11 46702892 46703260 -104080293 + MER48 LTR ERV1 16 387 0 226 180 16 49 chr11 46703299 46703360 -104080193 - MER21B LTR ERV1 -671 192 134 499 231 9 45 chr11 46703385 46703544 -104080009 - MER77 LTR ERV1 -409 196 5 1619 171 44 24 chr11 46703626 46703919 -104079634 + AluJo SINE Alu 1 299 -13 180 0 0 0 chr11 46704798 46704818 -104078735 + (TCCC)n Simple_repeat Simple_repeat 2 21 0 290 291 100 0 chr11 46705027 46705137 -104078416 - L2 LINE L2 0 3272 3152 * 500 280 237 27 chr11 46705113 46705311 -104078242 + L2 LINE L2 2951 3106 -207 180 77 0 0 chr11 46705311 46705337 -104078216 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 500 280 237 27 chr11 46705337 46705438 -104078115 + L2 LINE L2 3106 3313 0 1011 280 28 4 chr11 46706091 46706341 -104077212 + MIR SINE MIR 7 262 0 480 274 78 59 chr11 46706658 46706862 -104076691 + L1MC/D LINE L1 4256 4463 -1683 988 148 7 19 chr11 46706862 46707017 -104076536 + AluJb SINE Alu 1 153 -159 1142 179 5 5 chr11 46707117 46707312 -104076241 + AluJb SINE Alu 102 296 -16 317 297 118 21 chr11 46707339 46707865 -104075688 + L1MC/D LINE L1 4487 5063 -1083 26 0 0 0 chr11 46707995 46708021 -104075532 + AT_rich Low_complexity Low_complexity 1 26 0 572 262 58 15 chr11 46708074 46708312 -104075241 + L1MC/D LINE L1 5352 5597 -572 1199 265 28 56 chr11 46708405 46708798 -104074755 + LTR16A LTR ERVL 57 438 -12 695 304 25 19 chr11 46709119 46709610 -104073943 + HERV16 LTR ERVL 351 881 -4115 979 274 11 7 chr11 46709612 46709882 -104073671 + HERV16 LTR ERVL 1589 1859 -3137 1659 290 54 25 chr11 46709893 46710698 -104072855 + HERV16 LTR ERVL 2569 3396 -1911 949 326 54 20 chr11 46710730 46711728 -104071825 + HERV16 LTR ERVL 3516 4518 -1136 338 324 59 7 chr11 46712097 46712233 -104071320 + MIR SINE MIR 47 189 -73 2419 107 0 0 chr11 46712235 46712545 -104071008 + AluSx SINE Alu 1 310 -2 24 0 0 0 chr11 46712558 46712582 -104070971 + AT_rich Low_complexity Low_complexity 1 24 0 1271 174 15 23 chr11 46712679 46712943 -104070610 - MLT1D LTR MaLR -243 262 1 411 303 26 20 chr11 46713356 46713508 -104070045 + MIR SINE MIR 107 259 -3 1018 262 80 25 chr11 46713587 46713949 -104069604 + MLT1J1 LTR MaLR 63 444 -2 391 289 147 49 chr11 46714160 46714385 -104069168 - MIR SINE MIR 0 262 16 776 244 81 102 chr11 46714952 46715362 -104068191 - MLT1H LTR MaLR -13 536 136 415 279 10 10 chr11 46715576 46715680 -104067873 - MIR SINE MIR -86 122 19 2434 55 0 23 chr11 46715755 46716064 -104067489 - AluY SINE Alu -7 304 3 338 313 22 15 chr11 46716192 46716326 -104067227 - MIR SINE MIR 0 262 128 485 223 148 55 chr11 46716892 46717148 -104066405 + L2 LINE L2 2348 2627 -687 1874 191 100 19 chr11 46717150 46717570 -104065983 + MLT1C LTR MaLR 2 455 -12 1869 151 0 14 chr11 46717928 46718206 -104065347 + AluSx SINE Alu 1 274 -38 462 143 0 0 chr11 46718209 46718286 -104065267 + AluS SINE Alu 224 300 -10 203 313 7 116 chr11 46718382 46718529 -104065024 + MIR3 SINE MIR 13 143 -65 569 302 0 80 chr11 46718534 46718746 -104064807 - MIR SINE MIR -61 201 7 275 243 136 97 chr11 46719312 46719518 -104064035 - MIR SINE MIR -35 227 14 201 161 48 16 chr11 46720563 46720625 -104062928 + (CA)n Simple_repeat Simple_repeat 2 65 0 332 137 65 24 chr11 46720669 46720793 -104062760 + (CA)n Simple_repeat Simple_repeat 1 129 0 214 161 48 16 chr11 46720829 46720953 -104062600 + (CA)n Simple_repeat Simple_repeat 2 129 0 182 147 27 27 chr11 46721005 46721080 -104062473 + (CA)n Simple_repeat Simple_repeat 1 75 0 219 149 0 60 chr11 46721095 46721162 -104062391 + (CA)n Simple_repeat Simple_repeat 1 63 0 1504 206 105 52 chr11 46721210 46721307 -104062246 + MLT1D LTR MaLR 1 91 -414 1822 186 41 19 chr11 46721307 46721673 -104061880 - MLT1A2 LTR MaLR 0 374 1 1504 206 105 52 chr11 46721673 46722041 -104061512 + MLT1D LTR MaLR 91 491 -14 2307 135 89 5 chr11 46722159 46722551 -104061002 + MSTA LTR MaLR 4 428 0 198 0 0 0 chr11 46722616 46722638 -104060915 + (T)n Simple_repeat Simple_repeat 1 22 0 302 305 30 84 chr11 46723240 46723407 -104060146 + MIR3 SINE MIR 1 158 -50 492 311 120 45 chr11 46723416 46723882 -104059671 - L2 LINE L2 -2 3311 2811 982 251 21 11 chr11 46723913 46724299 -104059254 - MLT1J LTR MaLR -87 424 3 563 292 110 71 chr11 46724361 46724874 -104058679 + L2 LINE L2 2342 2884 -388 2251 113 6 3 chr11 46724874 46725185 -104058368 - AluSx SINE Alu 0 312 1 563 292 110 71 chr11 46725185 46725308 -104058245 + L2 LINE L2 2884 3001 -271 315 171 26 66 chr11 46726019 46726095 -104057458 + L1MCa LINE L1 1995 2067 -4359 * 351 224 10 71 chr11 46726072 46726170 -104057383 + L1MC4 LINE L1 6892 6983 -1339 2238 115 0 10 chr11 46726196 46726491 -104057062 - AluSx SINE Alu -20 292 1 398 291 12 55 chr11 46726537 46726702 -104056851 + MIR3 SINE MIR 40 197 -11 312 256 55 42 chr11 46726749 46727017 -104056536 - MLT1I LTR MaLR -2 407 72 320 232 36 80 chr11 46727721 46727833 -104055720 - MIR SINE MIR -19 243 137 320 237 65 11 chr11 46727921 46728014 -104055539 + LTR67 LTR ERVL 352 449 -108 308 314 46 23 chr11 46728140 46728315 -104055238 + L2 LINE L2 2550 2728 -586 182 194 0 0 chr11 46728557 46728588 -104054965 + MIR SINE MIR 217 247 -15 204 224 52 0 chr11 46728591 46728649 -104054904 + (AATTG)n Simple_repeat Simple_repeat 1 61 0 377 312 3 85 chr11 46728719 46729001 -104054552 + MER102a DNA MER1_type 62 320 -10 215 265 239 0 chr11 46729023 46729140 -104054413 - MIR3 SINE MIR -62 146 2 253 284 130 25 chr11 46729795 46729826 -104053727 + L2 LINE L2 2689 2715 -599 2448 67 0 22 chr11 46729826 46730141 -104053412 + AluY SINE Alu 3 310 -1 253 284 130 25 chr11 46730141 46730271 -104053282 + L2 LINE L2 2715 2867 -447 330 227 0 0 chr11 46730290 46730356 -104053197 - L2 LINE L2 -1 3312 3247 219 69 0 0 chr11 46730573 46730602 -104052951 + (TTCA)n Simple_repeat Simple_repeat 3 31 0 1010 265 117 27 chr11 46730603 46730783 -104052770 - L2 LINE L2 -12 3301 3139 708 194 0 0 chr11 46730783 46730907 -104052646 + FLAM_A SINE Alu 1 124 -9 2006 152 0 10 chr11 46730914 46731216 -104052337 + AluJb SINE Alu 1 299 -13 1010 265 117 27 chr11 46731216 46731549 -104052004 - L2 LINE L2 -179 3134 2725 1216 219 29 78 chr11 46732021 46732395 -104051158 + MLT1A2 LTR MaLR 19 374 0 311 151 16 143 chr11 46732395 46732451 -104051102 - Charlie7 DNA MER1_type -1 2611 2578 1824 188 3 0 chr11 46732451 46732744 -104050809 + AluJo SINE Alu 5 298 -14 311 151 16 143 chr11 46732744 46732813 -104050740 - Charlie7 DNA MER1_type -34 2578 2502 310 231 41 41 chr11 46732819 46732940 -104050613 - Charlie7 DNA MER1_type -2457 155 35 219 69 0 0 chr11 46733005 46733034 -104050519 + (TTCA)n Simple_repeat Simple_repeat 3 31 0 306 244 146 0 chr11 46733217 46733299 -104050254 + L2 LINE L2 3220 3313 0 252 0 0 0 chr11 46733880 46733908 -104049645 + (TG)n Simple_repeat Simple_repeat 2 29 0 288 321 12 0 chr11 46733913 46733997 -104049556 + GA-rich Low_complexity Low_complexity 2 86 0 295 275 92 17 chr11 46734068 46734188 -104049365 + MIR3 SINE MIR 2 130 -78 236 283 26 53 chr11 46734787 46734900 -104048653 - MIR3 SINE MIR -96 112 3 180 0 0 0 chr11 46734913 46734933 -104048620 + (GCCTG)n Simple_repeat Simple_repeat 2 21 0 278 254 0 0 chr11 46734939 46735002 -104048551 + MIR SINE MIR 84 146 -62 208 284 167 10 chr11 46735506 46735608 -104047945 - MIR SINE MIR -113 149 32 1840 192 32 35 chr11 46735618 46735993 -104047560 - MLT1A2 LTR MaLR 0 374 1 211 284 104 0 chr11 46736230 46736297 -104047256 + MIR SINE MIR 108 181 -81 228 154 77 46 chr11 46737286 46737351 -104046202 - MIR SINE MIR -1 261 195 493 303 20 20 chr11 46737604 46737756 -104045797 - MIR SINE MIR -55 207 56 2398 77 0 0 chr11 46738203 46738502 -104045051 + AluSg SINE Alu 1 299 -11 282 116 0 0 chr11 46738816 46738859 -104044694 + (TTCA)n Simple_repeat Simple_repeat 1 43 0 378 290 57 8 chr11 46738877 46739001 -104044552 - L2 LINE L2 -18 3254 3125 614 307 100 17 chr11 46739035 46739325 -104044228 + L2 LINE L2 3000 3313 0 1994 111 0 7 chr11 46739478 46739913 -104043640 + AluSg SINE Alu 3 435 0 193 159 0 45 chr11 46739917 46739961 -104043592 - L2 LINE L2 -340 2973 2932 514 303 28 22 chr11 46740108 46740286 -104043267 + MIR SINE MIR 77 255 -7 1801 171 10 3 chr11 46740286 46740595 -104042958 + AluJo SINE Alu 1 311 -1 217 297 31 0 chr11 46741568 46741632 -104041921 + MIR SINE MIR 78 143 -65 247 324 72 18 chr11 46741726 46741837 -104041716 + MIR SINE MIR 108 224 -38 265 314 0 39 chr11 46741924 46742026 -104041527 + L2 LINE L2 3122 3219 -94 1188 285 57 19 chr11 46742056 46742560 -104040993 - LTR33A LTR ERVL -4 519 29 242 317 24 0 chr11 46743377 46743459 -104040094 + L2 LINE L2 3186 3269 -3 1778 152 4 0 chr11 46744179 46744449 -104039104 - AluSx SINE Alu -39 273 3 28 0 0 0 chr11 46744554 46744582 -104038971 + AT_rich Low_complexity Low_complexity 1 28 0 192 267 0 0 chr11 46744582 46744642 -104038911 + L2 LINE L2 2989 3048 -224 511 461 8 75 chr11 46744764 46745018 -104038535 + MIR SINE MIR 26 262 0 1770 184 3 0 chr11 46745027 46745337 -104038216 - AluJo SINE Alu -1 311 1 191 276 13 26 chr11 46745858 46745934 -104037619 + MIR SINE MIR 108 182 -80 197 181 193 0 chr11 46746312 46746395 -104037158 + MIR3 SINE MIR 58 156 -52 2118 93 0 14 chr11 46746583 46746874 -104036679 - AluSg SINE Alu -21 289 3 306 224 15 0 chr11 46747926 46747993 -104035560 - MER113 DNA MER1_type? -123 398 331 426 250 19 0 chr11 46748689 46748793 -104034760 + MIR SINE MIR 35 140 -122 359 193 59 0 chr11 46748910 46749029 -104034524 + (TA)n Simple_repeat Simple_repeat 2 127 0 370 268 144 7 chr11 46749031 46749184 -104034369 - MIR SINE MIR -64 198 25 1652 184 7 10 chr11 46749246 46749556 -104033997 + AluJb SINE Alu 4 312 0 368 186 24 32 chr11 46749559 46749683 -104033870 + GA-rich Low_complexity Low_complexity 3 125 0 421 351 69 10 chr11 46750308 46750510 -104033043 + MIR SINE MIR 48 261 -1 28 0 0 0 chr11 46751803 46751831 -104031722 + AT_rich Low_complexity Low_complexity 1 28 0 563 284 45 0 chr11 46751839 46752015 -104031538 + L1ME3 LINE L1 5976 6159 -3 223 315 222 9 chr11 46752279 46752387 -104031166 + MIR SINE MIR 58 188 -74 315 323 47 16 chr11 46753217 46753344 -104030209 + MIR SINE MIR 22 152 -56 2150 113 0 3 chr11 46753446 46753746 -104029807 - AluSx SINE Alu -13 299 1 185 229 14 57 chr11 46753840 46753910 -104029643 + MIR SINE MIR 183 249 -13 189 107 0 0 chr11 46754117 46754145 -104029408 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 1492 153 71 0 chr11 46754154 46754409 -104029144 - AluJb SINE Alu -39 273 1 2060 115 3 13 chr11 46754877 46754901 -104028652 - AluSx SINE Alu -11 301 278 243 0 0 0 chr11 46754901 46754928 -104028625 + (TG)n Simple_repeat Simple_repeat 1 27 0 2060 115 3 13 chr11 46754928 46755207 -104028346 - AluSx SINE Alu -34 278 1 301 290 120 10 chr11 46755589 46755689 -104027864 + MIR SINE MIR 36 146 -62 194 288 0 17 chr11 46755725 46755784 -104027769 - L2 LINE L2 -2 3270 3213 300 235 15 0 chr11 46755855 46755923 -104027630 - L2 LINE L2 -212 3060 2992 337 294 194 17 chr11 46756278 46756458 -104027095 + MIR SINE MIR 20 231 -31 367 318 132 16 chr11 46757314 46757503 -104026050 - MIR SINE MIR -4 258 48 552 297 16 16 chr11 46758112 46758297 -104025256 + L2 LINE L2 1146 1330 -1984 621 214 14 14 chr11 46760149 46760294 -104023259 - MIR SINE MIR -69 193 49 1017 213 55 74 chr11 46761446 46761640 -104021913 + L2 LINE L2 2952 3148 -165 594 222 33 72 chr11 46761640 46761820 -104021733 + MER69A DNA AcHobo 1 173 -4 1017 213 55 74 chr11 46761820 46761910 -104021643 + L2 LINE L2 3148 3230 -83 2208 110 7 0 chr11 46761910 46762210 -104021343 - AluSx SINE Alu -10 302 1 1017 213 55 74 chr11 46762210 46762290 -104021263 + L2 LINE L2 3230 3310 -3 402 325 89 82 chr11 46762349 46762776 -104020777 + L2 LINE L2 2843 3272 0 201 204 37 19 chr11 46762836 46762890 -104020663 - MIR3 SINE MIR -1 207 153 263 143 0 0 chr11 46762966 46763008 -104020545 + MER4-int LTR ERV1 1111 1152 -5446 474 271 29 7 chr11 46763162 46763302 -104020251 - MIR3 SINE MIR -7 201 59 320 257 93 43 chr11 46763807 46763947 -104019606 - L1ME4a LINE L1 0 6121 5975 386 358 130 7 chr11 46763961 46764246 -104019307 - L2 LINE L2 -39 3233 2914 414 0 0 0 chr11 46764431 46764477 -104019076 + (TCTA)n Simple_repeat Simple_repeat 4 49 0 31 26 0 0 chr11 46764496 46764534 -104019019 + AT_rich Low_complexity Low_complexity 1 38 0 391 300 43 36 chr11 46764788 46764928 -104018625 - MLT1K LTR MaLR -350 238 98 373 242 45 70 chr11 46764931 46765088 -104018465 + L1ME3 LINE L1 5944 6096 -66 2036 117 7 0 chr11 46765129 46765427 -104018126 + AluSx SINE Alu 3 302 -10 1771 165 0 22 chr11 46765427 46765743 -104017810 + AluJo SINE Alu 3 311 -1 330 340 177 0 chr11 46766387 46766590 -104016963 + MIR SINE MIR 3 241 -21 1728 173 0 13 chr11 46767111 46767417 -104016136 - AluJo SINE Alu -10 302 1 180 143 0 0 chr11 46767434 46767462 -104016091 + L2 LINE L2 3223 3250 -22 1898 155 36 41 chr11 46767560 46767947 -104015606 - MLT1B LTR MaLR -5 385 1 1829 147 0 20 chr11 46768824 46769123 -104014430 + AluSx SINE Alu 1 293 -19 926 242 26 26 chr11 46769910 46770141 -104013412 - MIR SINE MIR -12 250 20 638 200 86 0 chr11 46770159 46770299 -104013254 + MER3 DNA MER1_type 45 196 -13 231 260 39 48 chr11 46770319 46770423 -104013130 + L1ME LINE L1 5522 5624 -497 449 300 67 22 chr11 46770461 46770641 -104012912 - MIR SINE MIR -46 216 29 236 195 0 0 chr11 46770982 46771023 -104012530 + MIR SINE M