This directory contains the Oct. 7, 2000 GenBank freeze ordered and oriented according to the corresponding fingerprint map and genome layout from Wash. U., taking into account overlap between fragments and bridging mRNA, EST, plasmid and BAC end pairs. Chromosomes 21 and 22 are the finished versions as obtained from NCBI. This directory includes the following files: contigFa.zip - The working draft sequence one file per fingerprint contig (clone layout) in Fasta format. Unpacks with one directory for each chromosome and one subdirectory for each fingerprint contig. contigAgp.zip - Description of how the working draft was generated from fragments at a contig layout level. chromFa.zip - Similar to contigFA.zip, but it unpacks to one file per chromosome. chromAgp.zip - Similar to contigAGP.zip, but it unpacks to one file per chromosome. qual.zip - Contains the Phrap quality values for the bases in the assembly. Structure is similar to contigFa.zip, with quality values instead of bases. database.zip - Contains tab-delimited text files of all of the tables in the MySQL database used for the browser. Includes MySQL files describing the format of each table. For a description of each table and its fields, see http://genome.ucsc.edu/goldenPath/gbdDescriptions.html This version includes a fix for the flipped finished clone bug.
Name Last modified Size Description
Parent Directory - chromAgp.zip 2001-03-01 16:35 5.1M contigAgp.zip 2001-03-01 16:36 5.2M database.zip 2001-03-12 15:33 458M contigFa.zip 2001-01-09 16:24 793M chromFa.zip 2001-01-09 16:18 795M qual.zip 2001-02-10 12:23 837M