2152 102 0 33 chrY 390 526 -24712553 + AluSx SINE Alu 1 140 -172 2141 121 24 0 chrY 526 816 -24712263 + AluSx SINE Alu 1 297 -15 2152 102 0 33 chrY 816 984 -24712095 + AluSx SINE Alu 140 295 -17 1690 189 3 10 chrY 1017 1308 -24711771 + AluJo SINE Alu 1 289 -23 22 0 0 0 chrY 1313 1335 -24711744 + AT_rich Low_complexity Low_complexity 1 22 0 2085 118 3 0 chrY 1510 1816 -24711263 - AluSx SINE Alu 0 312 1 2498 72 0 10 chrY 2756 3062 -24710017 + AluY SINE Alu 1 303 -8 2317 97 3 0 chrY 3382 3680 -24709399 - AluSq SINE Alu -14 299 1 2255 109 30 0 chrY 4097 4399 -24708680 - AluSx SINE Alu -1 311 1 2118 110 20 17 chrY 4738 5039 -24708040 - AluSx SINE Alu -10 302 1 973 124 11 10 chrY 5228 5518 -24707561 - THE1C LTR MaLR 0 375 1 1914 161 0 3 chrY 5775 6074 -24707005 + AluJo SINE Alu 3 300 -12 2339 102 0 0 chrY 6078 6373 -24706706 - AluY SINE Alu -16 295 1 21 0 0 0 chrY 6376 6397 -24706682 + AT_rich Low_complexity Low_complexity 1 21 0 1575 115 0 9 chrY 6644 6861 -24706218 + AluSg/x SINE Alu 95 309 0 2405 79 7 3 chrY 7209 7514 -24705565 + AluSx SINE Alu 1 306 -6 354 80 0 0 chrY 7791 7841 -24705238 - MADE1 DNA Mariner -1 79 30 301 121 0 121 chrY 7837 7903 -24705176 + AluJo SINE Alu 94 151 -151 * 294 77 19 58 chrY 7904 7956 -24705123 - AluJo SINE Alu -160 142 93 * 383 41 0 0 chrY 7951 8000 -24705079 + MADE1 DNA Mariner 30 78 -2 376 229 32 13 chrY 8342 8710 -24704369 + CT-rich Low_complexity Low_complexity 1 375 0 599 214 12 15 chrY 8731 9070 -24704009 + CT-rich Low_complexity Low_complexity 1 338 0 530 289 168 43 chrY 10020 10198 -24702881 - HAL1 LINE L1 -1179 1328 1174 2397 116 0 0 chrY 10198 10508 -24702571 - AluSx SINE Alu -2 310 1 530 289 168 43 chrY 10508 10751 -24702328 - HAL1 LINE L1 -1333 1174 881 2624 71 0 0 chrY 11822 12133 -24700946 + AluY SINE Alu 1 311 0 2349 91 0 0 chrY 12477 12802 -24700277 + AluY SINE Alu 1 325 0 2337 97 7 3 chrY 13069 13377 -24699702 - AluSc SINE Alu 0 309 1 2375 103 6 3 chrY 13387 13698 -24699381 - AluSx SINE Alu 0 312 1 1728 95 9 0 chrY 14417 14639 -24698440 + AluSg/x SINE Alu 70 293 -17 1725 141 6 72 chrY 14752 15071 -24698008 - AluJo SINE Alu -14 298 1 2009 138 0 13 chrY 15350 15655 -24697424 - AluSx SINE Alu -10 302 2 2316 89 0 52 chrY 15697 16022 -24697057 + AluSp SINE Alu 2 309 -4 184 271 21 0 chrY 17741 17789 -24695290 + L2 LINE L2 3261 3309 -4 2436 90 0 0 chrY 17922 18223 -24694856 - AluSx SINE Alu -11 301 1 240 122 0 0 chrY 18544 18585 -24694494 + (T)n Simple_repeat Simple_repeat 1 41 0 1168 95 0 0 chrY 20066 20214 -24692865 - AluSc SINE Alu -161 148 1 2461 68 0 19 chrY 20608 20917 -24692162 + AluSc SINE Alu 1 303 -6 295 294 50 0 chrY 20985 21104 -24691975 - L1M4 LINE L1 -2171 3975 3851 423 0 0 0 chrY 21335 21382 -24691697 + (TG)n Simple_repeat Simple_repeat 2 48 0 2192 123 3 0 chrY 21427 21720 -24691359 - AluSx SINE Alu -18 294 1 3378 80 0 13 chrY 22353 22803 -24690276 - MLT2A1 LTR ERVL 0 444 1 2261 124 0 6 chrY 23010 23324 -24689755 - AluSx SINE Alu 0 312 1 694 251 52 22 chrY 23719 23788 -24689291 + MER58 DNA MER1_type 6 71 -2349 2095 134 3 6 chrY 23788 24101 -24688978 - AluSx SINE Alu 0 312 1 694 251 52 22 chrY 24101 24315 -24688764 + MER58 DNA MER1_type 71 2420 0 597 189 13 75 chrY 24460 24502 -24688577 - L1MB5 LINE L1 0 6174 6131 1793 115 58 0 chrY 24502 24762 -24688317 - AluSx SINE Alu -16 296 22 597 189 13 75 chrY 24762 24878 -24688201 - L1MB5 LINE L1 -43 6131 6026 504 246 0 30 chrY 24892 25026 -24688053 - MLT1C LTR MaLR 0 467 338 893 138 6 17 chrY 25031 25212 -24687867 + (TTCC)n Simple_repeat Simple_repeat 1 179 0 268 189 27 0 chrY 25217 25291 -24687788 + CT-rich Low_complexity Low_complexity 2 77 0 2084 110 0 21 chrY 25291 25573 -24687506 - AluSx SINE Alu -36 276 1 1003 176 131 0 chrY 25574 25795 -24687284 - MLT1C LTR MaLR -113 354 105 440 80 0 148 chrY 25797 25850 -24687229 - MADE1 DNA Mariner 0 80 43 2307 112 0 0 chrY 25850 26146 -24686933 + AluSg SINE Alu 1 296 -14 440 80 0 148 chrY 26146 26180 -24686899 - MADE1 DNA Mariner -37 43 6 524 191 0 9 chrY 26185 26290 -24686789 - MLT1C LTR MaLR -363 104 1 852 230 0 0 chrY 26293 26489 -24686590 - L1MB5 LINE L1 -169 6005 5810 534 165 0 0 chrY 26602 26705 -24686374 + (CA)n Simple_repeat Simple_repeat 1 103 0 2263 117 0 0 chrY 26763 27054 -24686025 + AluSx SINE Alu 3 293 -19 1477 158 3 89 chrY 29388 29514 -24683565 + MER47A DNA MER2_type 1 136 -2187 2034 125 24 14 chrY 29514 29811 -24683268 - AluSq SINE Alu -13 300 1 1477 158 3 89 chrY 29811 30020 -24683059 + MER47A DNA MER2_type 136 307 -59 1519 225 0 10 chrY 30020 30331 -24682748 - AluJo SINE Alu 0 312 5 270 280 17 68 chrY 30362 30454 -24682625 - MIR SINE MIR -40 222 136 3469 71 21 5 chrY 30454 30891 -24682188 - MLT2A1 LTR ERVL 0 444 1 270 280 17 68 chrY 30891 30916 -24682163 - MIR SINE MIR -126 136 111 3654 124 26 0 chrY 31044 31584 -24681495 - MER41A LTR ERV1 0 554 1 1036 109 14 0 chrY 31844 31991 -24681088 + L1PA10 LINE L1 6020 6168 0 1030 187 41 8 chrY 32287 32533 -24680546 + L1MA4 LINE L1 6046 6299 -1 4073 178 80 9 chrY 32619 33390 -24679689 - LTR1B LTR ERV1 0 826 1 2348 125 0 0 chrY 33625 33937 -24679142 + AluSx SINE Alu 1 312 0 346 194 62 131 chrY 34181 34341 -24678738 - MER5A DNA MER1_type 0 189 41 859 228 47 9 chrY 34527 34738 -24678341 + MER20 DNA MER1_type 1 219 0 318 194 37 37 chrY 34755 34863 -24678216 + (TCTA)n Simple_repeat Simple_repeat 4 111 0 641 141 19 6 chrY 34874 35030 -24678049 + (TCTA)n Simple_repeat Simple_repeat 4 161 0 728 254 46 0 chrY 35046 35243 -24677836 + MER20 DNA MER1_type 14 219 0 1014 97 0 156 chrY 35941 36127 -24676952 + AluSg/x SINE Alu 138 294 -18 1880 195 4 30 chrY 36280 36389 -24676690 + MLT1B LTR MaLR 1 111 -285 2298 70 33 33 chrY 36389 36691 -24676388 + AluY SINE Alu 1 302 -9 1880 195 4 30 chrY 36691 36985 -24676094 + MLT1B LTR MaLR 111 396 0 2178 167 8 13 chrY 37014 37403 -24675676 + MLT1B LTR MaLR 4 390 0 1093 175 5 24 chrY 37404 37641 -24675438 + MLT1B LTR MaLR 159 467 0 1235 178 9 0 chrY 37641 37871 -24675208 + MLT1B LTR MaLR 158 389 -1 334 278 21 10 chrY 37880 37977 -24675102 + MER5A DNA MER1_type 6 103 -86 3172 166 46 88 chrY 38731 38960 -24674119 + LTR39 LTR ERV1 1 238 -545 1960 135 10 10 chrY 38960 39248 -24673831 - AluSx SINE Alu -24 288 1 3172 166 46 88 chrY 39248 39827 -24673252 + LTR39 LTR ERV1 238 775 -8 3431 144 11 0 chrY 39832 40375 -24672704 + MER41A LTR ERV1 6 554 0 2099 143 0 0 chrY 40693 41001 -24672078 + AluSx SINE Alu 1 308 -4 1862 160 0 17 chrY 41001 41301 -24671778 + AluSg SINE Alu 1 295 -15 324 70 0 0 chrY 41301 41344 -24671735 + (GGAA)n Simple_repeat Simple_repeat 2 44 0 2977 144 20 64 chrY 41797 42078 -24671001 - MER39B LTR ERV1 -27 626 334 2462 73 0 0 chrY 42078 42366 -24670713 - AluSc SINE Alu -21 288 1 2977 144 20 64 chrY 42366 42485 -24670594 - MER39B LTR ERV1 -319 334 211 2619 52 0 3 chrY 42485 42792 -24670287 - AluY SINE Alu -5 306 1 2977 144 20 64 chrY 42792 43044 -24670035 - MER39B LTR ERV1 -442 211 2 2266 131 0 0 chrY 44412 44724 -24668355 + AluSx SINE Alu 1 312 0 228 378 56 14 chrY 45322 45465 -24667614 + MIR SINE MIR 103 251 -11 418 247 159 12 chrY 45741 45911 -24667168 - MLT1J2 LTR MaLR 0 450 256 1289 191 22 4 chrY 46057 46329 -24666750 + L1MB5 LINE L1 5809 6085 -89 1691 187 3 31 chrY 46758 47079 -24666000 - AluJo SINE Alu 0 312 1 2668 204 31 4 chrY 48113 48658 -24664421 + L1MB5 LINE L1 5615 6174 0 23 54 0 0 chrY 48935 48972 -24664107 + AT_rich Low_complexity Low_complexity 1 37 0 252 188 25 12 chrY 48980 49060 -24664019 + GA-rich Low_complexity Low_complexity 4 84 0 478 218 17 11 chrY 49084 49263 -24663816 + GA-rich Low_complexity Low_complexity 1 180 0 1167 112 0 0 chrY 49299 49407 -24663672 + (GGAA)n Simple_repeat Simple_repeat 1 287 0 1167 112 0 0 chrY 49407 49586 -24663493 + (GGAA)n Simple_repeat Simple_repeat 1 179 0 198 71 0 0 chrY 50106 50134 -24662945 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 3784 194 19 4 chrY 50685 51438 -24661641 + L1MB5 LINE L1 5405 6168 -6 2456 106 0 0 chrY 51471 51783 -24661296 + AluSx SINE Alu 1 312 0 867 50 0 0 chrY 51800 51901 -24661178 + AluYa5 SINE Alu 1 101 -210 3998 74 9 7 chrY 51902 52459 -24660620 - LTR6B LTR ERV1 0 558 1 1547 63 5 15 chrY 52459 52665 -24660414 + AluYa5 SINE Alu 99 302 -9 1138 164 0 11 chrY 53227 53416 -24659663 + AluJb SINE Alu 123 309 -3 1135 39 0 0 chrY 53573 53702 -24659377 + AluY SINE Alu 1 129 -182 1994 142 13 10 chrY 54055 54366 -24658713 + AluJo SINE Alu 1 312 0 1984 122 42 7 chrY 54570 54858 -24658221 - AluSx SINE Alu -14 298 1 232 266 70 8 chrY 54871 54999 -24658080 + L1MB5 LINE L1 4980 5115 -1031 879 156 28 0 chrY 55000 55141 -24657938 + AluSg/x SINE Alu 153 297 -15 189 0 0 0 chrY 55181 55202 -24657877 + (TAA)n Simple_repeat Simple_repeat 2 22 0 958 186 4 75 chrY 55302 55439 -24657640 + MER2 DNA MER2_type 1 117 -228 2228 120 0 0 chrY 55439 55739 -24657340 - AluSx SINE Alu -12 300 1 958 186 4 75 chrY 55739 55827 -24657252 + MER2 DNA MER2_type 117 210 -135 227 30 0 30 chrY 55975 56008 -24657071 + (GAAAA)n Simple_repeat Simple_repeat 4 35 0 24 32 0 0 chrY 56202 56233 -24656846 + AT_rich Low_complexity Low_complexity 1 31 0 2032 112 35 0 chrY 56241 56527 -24656552 + AluSg SINE Alu 1 296 -14 403 189 7 45 chrY 56567 56715 -24656364 - MER4A LTR ERV1 -203 461 261 598 111 0 10 chrY 56715 56814 -24656265 - MER4A LTR ERV1 -566 98 1 4365 101 23 14 chrY 56852 57271 -24655808 + PABL_A LTR ERV1 1 430 -230 2470 56 0 3 chrY 57271 57577 -24655502 + AluY SINE Alu 1 305 -6 4365 101 23 14 chrY 57577 57809 -24655270 + PABL_A LTR ERV1 430 658 -2 491 260 50 10 chrY 57833 58033 -24655046 - MER67C LTR ERV1 -469 241 34 829 260 71 0 chrY 58396 58704 -24654375 + L1MB5 LINE L1 5465 5794 -370 2339 78 3 0 chrY 58774 59070 -24654009 + AluY SINE Alu 1 297 -14 322 263 8 60 chrY 59113 59246 -24653833 + L1ME2 LINE L1 6002 6127 -37 22 0 0 0 chrY 59297 59319 -24653760 + AT_rich Low_complexity Low_complexity 1 22 0 2436 87 3 0 chrY 59626 59936 -24653143 - AluY SINE Alu 0 311 1 333 272 60 106 chrY 59941 60176 -24652903 - MIR SINE MIR -19 243 20 329 299 7 28 chrY 60370 60514 -24652565 + L1ME3 LINE L1 5627 5767 -403 416 245 20 0 chrY 60543 60645 -24652434 + U6 snRNA snRNA 4 107 0 863 206 46 27 chrY 60645 60907 -24652172 + L1MA8 LINE L1 5960 6226 -65 255 223 91 41 chrY 60950 61002 -24652077 + L1ME3 LINE L1 5870 5918 -244 2139 139 94 54 chrY 61002 61468 -24651611 - MER31A LTR ERV1 0 485 1 255 223 91 41 chrY 61468 61536 -24651543 + L1ME3 LINE L1 5918 5996 -166 276 234 156 44 chrY 62108 62313 -24650766 - LTR37A LTR ERV1 -2 424 197 1110 210 11 11 chrY 64887 65154 -24647925 + L1MB5 LINE L1 5831 6097 -77 219 253 0 80 chrY 66419 66494 -24646585 + L2 LINE L2 3203 3271 -1 313 239 87 0 chrY 67604 67696 -24645383 + L1M4 LINE L1 5102 5201 -945 434 257 28 7 chrY 69864 70008 -24643071 - MER39 LTR ERV1 -11 696 550 504 126 0 0 chrY 70024 70111 -24642968 - AluSp/q SINE Alu -5 308 222 461 287 71 35 chrY 70114 70368 -24642711 - LTR47B LTR ERVL -130 313 51 1101 344 83 31 chrY 70690 71421 -24641658 - LTR49-int LTR ERV1 -439 6683 5885 1992 140 0 10 chrY 71421 71747 -24641332 - AluSc SINE Alu 0 309 1 1101 344 83 31 chrY 71747 72014 -24641065 - LTR49-int LTR ERV1 -1237 5885 5633 1892 137 20 13 chrY 72612 72911 -24640168 + AluSx SINE Alu 1 301 -11 1482 193 64 10 chrY 73003 73299 -24639780 - AluJb SINE Alu 0 312 1 2245 168 46 26 chrY 73299 73365 -24639714 + Tigger3(Golem) DNA MER2_type 2511 2574 -455 2129 134 0 0 chrY 73365 73663 -24639416 + AluSx SINE Alu 1 298 -14 2245 168 46 26 chrY 73663 74095 -24638984 + Tigger3(Golem) DNA MER2_type 2574 3019 -10 306 50 0 0 chrY 74186 74226 -24638853 + (CA)n Simple_repeat Simple_repeat 2 41 0 2047 125 18 0 chrY 74252 74554 -24638525 + AluSg SINE Alu 1 307 0 1157 193 97 65 chrY 74643 74957 -24638122 - MER65C LTR ERV1 -15 446 113 2002 128 14 0 chrY 74957 75239 -24637840 - AluSx SINE Alu -26 286 1 1157 193 97 65 chrY 75239 75355 -24637724 - MER65C LTR ERV1 -348 113 2 1928 140 13 17 chrY 75609 75909 -24637170 - AluSq SINE Alu -11 302 4 39 22 0 0 chrY 75970 76016 -24637063 + AT_rich Low_complexity Low_complexity 1 46 0 812 255 117 11 chrY 76201 76483 -24636596 - LTR49-int LTR ERV1 -698 4173 3862 2055 125 3 0 chrY 76560 76848 -24636231 + AluSp SINE Alu 1 289 -24 351 113 0 0 chrY 76848 76901 -24636178 + (TA)n Simple_repeat Simple_repeat 1 53 0 288 211 122 11 chrY 77025 77115 -24635964 - LTR49-int LTR ERV1 -1409 3462 3363 814 246 45 10 chrY 77230 77519 -24635560 - LTR49-int LTR ERV1 -1570 3301 3003 17425 135 10 13 chrY 77540 81334 -24631745 - L1PA10 LINE L1 -6 6162 2377 33805 94 15 19 chrY 81358 87531 -24625548 - L1PA6 LINE L1 -2 6152 11 3854 159 37 8 chrY 87522 88303 -24624776 - L1PA10 LINE L1 -3739 2407 1604 * 345 221 0 19 chrY 88307 88411 -24624668 - LTR49-int LTR ERV1 -1753 3183 3082 2241 113 3 0 chrY 88442 88734 -24624345 - AluY SINE Alu -18 293 1 1756 180 0 7 chrY 88790 89085 -24623994 + AluSx SINE Alu 1 293 -19 1800 204 23 43 chrY 89105 89545 -24623534 - MSTB1 LTR MaLR 0 432 2 391 241 40 65 chrY 89604 89803 -24623276 - LTR49-int LTR ERV1 -2098 4233 4040 900 218 6 0 chrY 89874 90086 -24622993 + AluSg/x SINE Alu 113 325 0 6992 193 28 44 chrY 90097 90902 -24622177 - L1PA15 LINE L1 0 6165 5349 2142 111 0 38 chrY 90902 91218 -24621861 - AluSp SINE Alu -5 308 5 6992 193 28 44 chrY 91218 91616 -24621463 - L1PA15 LINE L1 -816 5349 4946 2145 128 0 0 chrY 91616 91913 -24621166 - AluY SINE Alu -14 297 1 6992 193 28 44 chrY 91913 93373 -24619706 - L1PA15 LINE L1 -1219 4946 3513 2281 107 3 0 chrY 93390 93698 -24619381 - AluY SINE Alu -2 309 1 1913 132 3 35 chrY 94066 94376 -24618703 + AluSc SINE Alu 1 300 -9 1560 209 3 11 chrY 94591 94874 -24618205 + AluSx SINE Alu 9 289 -23 439 156 104 32 chrY 94875 95029 -24618050 - LTR49-int LTR ERV1 -1149 3787 3623 1168 164 34 57 chrY 95222 95520 -24617559 - MER65C LTR ERV1 -31 430 140 2218 99 10 0 chrY 95528 95851 -24617228 + AluSp SINE Alu 1 313 0 249 182 0 0 chrY 95870 95914 -24617165 - MER65C LTR ERV1 -417 44 1 768 141 14 7 chrY 95936 96078 -24617001 - L1MA3 LINE L1 0 6305 6163 3676 180 40 54 chrY 96082 96375 -24616704 - L1MA5 LINE L1 -292 6008 5712 2169 90 53 17 chrY 96375 96674 -24616405 - AluSg SINE Alu 0 310 1 3676 180 40 54 chrY 96674 97279 -24615800 - L1MA5 LINE L1 -588 5712 5100 2224 126 3 0 chrY 97279 97588 -24615491 - AluSp SINE Alu -3 310 1 3676 180 40 54 chrY 97588 98375 -24614704 - L1MA5 LINE L1 -1200 5100 4411 2161 134 3 0 chrY 98375 98680 -24614399 - AluSx SINE Alu -6 306 1 785 182 18 18 chrY 98709 98879 -24614200 + L1MA8 LINE L1 5961 6130 -161 301 243 0 0 chrY 98876 98950 -24614129 + L1 LINE L1 3750 3823 -2323 * 690 262 30 13 chrY 98950 99187 -24613892 + MLT1D LTR MaLR 265 505 0 1914 137 47 3 chrY 99384 99705 -24613374 - AluSx SINE Alu 0 334 1 1491 226 104 35 chrY 100317 100835 -24612244 + LTR64 LTR ERVK 3 556 -2 1990 95 11 0 chrY 100964 101250 -24611829 + AluSp SINE Alu 22 310 0 317 238 116 43 chrY 101456 101620 -24611459 + L1ME LINE L1 5641 5816 -305 240 111 0 0 chrY 102176 102212 -24610867 + (CA)n Simple_repeat Simple_repeat 1 36 0 456 143 0 0 chrY 102346 102409 -24610670 - AluS SINE Alu -21 288 226 228 170 19 38 chrY 102465 102518 -24610561 - LTR68 LTR ERV1 -303 437 386 306 87 0 0 chrY 102990 103036 -24610043 + (CA)n Simple_repeat Simple_repeat 2 47 0 236 159 0 0 chrY 103048 103092 -24609987 + HAL1 LINE L1 2111 2154 -353 1918 151 14 0 chrY 103181 103465 -24609614 - AluSx SINE Alu -24 288 1 835 248 0 6 chrY 103520 103720 -24609359 - AluJo SINE Alu 0 320 122 6719 139 73 5 chrY 104056 104132 -24608947 - MER41-int LTR ERV1 -447 7090 7021 2099 128 3 13 chrY 104132 104445 -24608634 - AluSg SINE Alu 0 310 1 6719 139 73 5 chrY 104445 105454 -24607625 - MER41-int LTR ERV1 -516 7021 5931 10691 128 20 19 chrY 105454 107499 -24605580 + L1P3 LINE L1 687 2738 -3723 2445 216 28 55 chrY 107478 108201 -24604878 + L1M4 LINE L1 4392 5094 -1367 * 3366 135 43 53 chrY 108279 108903 -24604176 - MER41-int LTR ERV1 -1671 5866 5249 1736 111 23 24 chrY 108902 108942 -24604137 - MER41-int LTR ERV1 -2572 2645 2606 * 2078 137 0 3 chrY 108942 109248 -24603831 + AluSx SINE Alu 1 305 -7 1736 111 23 24 chrY 109248 109595 -24603484 - MER41-int LTR ERV1 -2611 2606 2214 * 2432 142 134 14 chrY 109577 110084 -24602995 - MER41-int LTR ERV1 -2578 3368 2801 520 78 184 58 chrY 110060 110163 -24602916 - MER41-int LTR ERV1 -4781 1165 1050 * 6258 127 48 50 chrY 110151 110670 -24602409 - MER41-int LTR ERV1 -4769 3047 2528 2596 148 42 29 chrY 110670 111148 -24601931 - LTR19A LTR ERV1 -2 484 1 6258 127 48 50 chrY 111148 111885 -24601194 - MER41-int LTR ERV1 -5288 2528 1794 1509 170 8 0 chrY 111905 112152 -24600927 - AluY SINE Alu -25 286 38 676 186 9 89 chrY 112156 112378 -24600701 - MER4A LTR ERV1 -140 524 261 475 155 31 21 chrY 112378 112475 -24600604 - MER4A LTR ERV1 -566 98 1 4559 160 36 32 chrY 112475 113367 -24599712 - MER41-int LTR ERV1 -6213 1603 709 2627 111 22 24 chrY 113367 113917 -24599162 - PABL_A LTR ERV1 -69 591 1 193 220 20 20 chrY 113968 114018 -24599061 + MIR SINE MIR 199 248 -14 673 118 80 96 chrY 114166 114294 -24598785 + MER4A LTR ERV1 1 127 -537 2153 89 3 48 chrY 114294 114608 -24598471 + AluY SINE Alu 1 300 -11 673 118 80 96 chrY 114608 114666 -24598413 + MER4A LTR ERV1 127 184 -480 1738 112 0 0 chrY 114666 114907 -24598172 - AluY SINE Alu -22 289 49 3109 182 47 7 chrY 114907 115484 -24597595 - MER41-int LTR ERV1 -7111 705 106 1068 183 0 0 chrY 115507 115693 -24597386 + MER4A LTR ERV1 171 356 -308 1561 114 0 0 chrY 115757 115958 -24597121 - AluSp SINE Alu -112 201 1 544 169 141 87 chrY 115978 116162 -24596917 + MER4A LTR ERV1 355 548 -116 414 0 0 0 chrY 116162 116208 -24596871 + (GA)n Simple_repeat Simple_repeat 1 46 0 765 180 0 14 chrY 116208 116347 -24596732 + L1MA10 LINE L1 6161 6297 -37 198 71 0 0 chrY 116364 116392 -24596687 + (TTTAA)n Simple_repeat Simple_repeat 3 30 0 2497 34 0 20 chrY 116392 116679 -24596400 - AluY SINE Alu -28 283 1 272 292 21 10 chrY 116769 116865 -24596214 - L1MB7 LINE L1 -26 6158 6062 1845 173 92 19 chrY 120145 120556 -24592523 - MER67A LTR ERV1 -102 441 1 234 287 37 56 chrY 121804 121912 -24591167 + MIR SINE MIR 46 151 -111 1386 153 65 102 chrY 124567 124919 -24588160 - L1PB3 LINE L1 -9 6145 5807 2879 10 0 0 chrY 126624 126934 -24586145 - AluYa5 SINE Alu -1 310 1 2279 95 7 0 chrY 129627 129921 -24583158 - AluSp SINE Alu -16 297 2 308 270 43 43 chrY 131763 131926 -24581153 + L1MC5 LINE L1 7745 7907 -54 2222 104 3 7 chrY 131930 132228 -24580851 - AluY SINE Alu -14 297 1 779 145 16 0 chrY 132389 132513 -24580566 - AluSx SINE Alu -11 299 174 892 101 8 0 chrY 132514 132633 -24580446 - AluSx SINE Alu -192 120 1 225 246 57 57 chrY 132720 132842 -24580237 - L1MC4a LINE L1 -1347 6461 6340 3370 219 75 39 chrY 132862 133208 -24579871 - L1MB2 LINE L1 -2 6405 6073 1935 150 7 3 chrY 133208 133508 -24579571 - AluSq SINE Alu -12 301 1 3370 219 75 39 chrY 133508 134563 -24578516 - L1MB2 LINE L1 -334 6073 4955 497 215 93 19 chrY 134597 134802 -24578277 - L1MB2 LINE L1 -2912 3470 3251 679 253 5 61 chrY 134803 135093 -24577986 - L1MB2 LINE L1 -3750 2632 2361 455 209 57 81 chrY 135132 135343 -24577736 - L1MB2 LINE L1 -4048 2336 2131 453 250 167 15 chrY 135480 135557 -24577522 - L1MB2 LINE L1 -4512 1872 1808 195 42 0 0 chrY 135557 135581 -24577498 + (TTTC)n Simple_repeat Simple_repeat 1 24 0 453 250 167 15 chrY 135581 135707 -24577372 - L1MB2 LINE L1 -4576 1808 1638 3550 158 74 36 chrY 135721 136423 -24576656 + MER4E LTR ERV1 1 729 -50 1344 208 135 75 chrY 136426 137151 -24575928 - L1MB2 LINE L1 -4761 1623 855 376 209 0 57 chrY 137155 137260 -24575819 - L1M3c LINE L1 -5124 1017 919 2132 125 7 0 chrY 137399 137704 -24575375 - AluSp SINE Alu -5 308 2 866 138 0 29 chrY 137704 137842 -24575237 - AluSq/x SINE Alu -177 135 2 1027 169 6 6 chrY 137843 138009 -24575070 - AluSg/x SINE Alu -11 301 136 370 294 57 64 chrY 138029 138294 -24574785 - L1MEd LINE L1 -4937 1593 1331 2287 93 6 10 chrY 141661 141973 -24571106 - AluY SINE Alu 0 311 1 738 267 4 43 chrY 142965 143197 -24569882 - MLT1E2 LTR MaLR -160 466 244 3473 190 32 10 chrY 143302 143981 -24569098 - MER52A LTR ERV1 -2 1753 1060 342 229 79 14 chrY 143949 144089 -24568990 - MER52C LTR ERV1 -680 598 450 * 1279 213 48 21 chrY 144311 144602 -24568477 - AluSx SINE Alu -13 299 1 1857 143 0 4 chrY 146021 146293 -24566786 + AluSg SINE Alu 19 289 -21 507 237 237 6 chrY 146294 146467 -24566612 - MLT1C LTR MaLR -57 410 198 2252 120 3 0 chrY 146501 146809 -24566270 - AluY SINE Alu 0 311 3 663 227 65 38 chrY 146886 147071 -24566008 - Charlie1a DNA MER1_type -1225 230 41 283 281 110 20 chrY 147324 147470 -24565609 + L1ME3 LINE L1 5801 5959 -203 809 238 0 0 chrY 147790 147950 -24565129 - AluJo SINE Alu -15 297 138 3749 121 2 4 chrY 147951 148463 -24564616 - MER9 LTR ERVK 0 511 1 770 165 23 30 chrY 148474 148607 -24564472 - AluJo SINE Alu -169 133 2 1404 252 107 65 chrY 148608 148852 -24564227 - L1MDa LINE L1 -2726 3814 3582 1941 148 3 16 chrY 148852 149157 -24563922 - AluSx SINE Alu -11 301 1 1404 252 107 65 chrY 149157 150152 -24562927 - L1MDa LINE L1 -2958 3582 2524 670 241 39 24 chrY 150161 150368 -24562711 - PABL_B LTR ERV1 -2 665 456 669 199 149 47 chrY 150857 151178 -24561901 - L1MDa LINE L1 -4037 2503 2150 * 1593 291 100 23 chrY 151169 152165 -24560914 - L1MDa LINE L1 -5194 1346 35 8457 63 19 0 chrY 152260 153248 -24559831 + LTR13 LTR ERVK 1 1007 0 1856 136 3 89 chrY 153303 153641 -24559438 + AluSx SINE Alu 1 309 -3 2362 85 0 0 chrY 153641 153936 -24559143 + AluY SINE Alu 1 295 -16 2011 154 13 0 chrY 154389 154695 -24558384 + AluSx SINE Alu 1 310 -2 492 100 0 0 chrY 155519 155599 -24557480 + (TA)n Simple_repeat Simple_repeat 2 81 0 1665 183 37 0 chrY 156003 156303 -24556776 + AluSx SINE Alu 1 311 -1 1137 224 79 34 chrY 156791 157170 -24555909 + MSTD LTR MaLR 1 396 0 2319 64 17 10 chrY 158311 158609 -24554470 + AluY SINE Alu 1 300 -11 1300 136 15 5 chrY 159991 160189 -24552890 + AluSc SINE Alu 103 302 -7 2138 136 0 0 chrY 160200 160494 -24552585 + AluSg SINE Alu 5 298 -12 628 247 59 0 chrY 160494 160689 -24552390 + L1MB5 LINE L1 5964 6161 -5 2237 102 0 13 chrY 160694 160998 -24552081 + AluY SINE Alu 1 300 -11 12558 119 22 10 chrY 160998 163013 -24550066 - HERVK3 LTR ERVK -5167 2076 38 911 173 6 6 chrY 163019 163192 -24549887 - LTR3 LTR ERVK -3 429 257 1400 172 8 0 chrY 163228 163466 -24549613 - LTR3 LTR ERVK -171 261 22 4228 218 74 6 chrY 163478 164423 -24548656 - MER83-int LTR ERV1 -3268 1017 9 2105 161 25 39 chrY 164433 164869 -24548210 - MER83 LTR ERV1 -13 435 6 452 208 14 14 chrY 165063 165207 -24547872 + CT-rich Low_complexity Low_complexity 2 145 0 1164 247 36 23 chrY 165207 165515 -24547564 - AluJo SINE Alu 0 312 1 22 0 0 0 chrY 165616 165638 -24547441 + AT_rich Low_complexity Low_complexity 1 22 0 2053 122 3 0 chrY 165762 166048 -24547031 + AluSg1 SINE Alu 1 287 -22 1770 185 3 0 chrY 166057 166344 -24546735 + AluJb SINE Alu 1 288 -24 1643 169 26 0 chrY 166354 166621 -24546458 + AluJb SINE Alu 37 310 -2 314 208 24 24 chrY 166624 166749 -24546330 + GA-rich Low_complexity Low_complexity 3 127 0 769 148 9 0 chrY 166869 166984 -24546095 + FLAM_C SINE Alu 1 116 -17 1976 136 0 14 chrY 167099 167413 -24545666 + AluSg SINE Alu 1 310 0 2365 63 0 7 chrY 167478 167779 -24545300 + AluY SINE Alu 1 299 -12 1011 207 14 5 chrY 167780 168002 -24545077 - L1MB2 LINE L1 -344 5827 5604 1579 256 66 26 chrY 168023 168886 -24544193 - L1M4 LINE L1 -3172 3210 2307 762 246 62 9 chrY 168886 169110 -24543969 - MER46A DNA MER2_type 0 236 1 1579 256 66 26 chrY 169110 169274 -24543805 - L1M4 LINE L1 -4075 2307 2151 209 191 22 45 chrY 169276 169365 -24543714 + T-rich Low_complexity Low_complexity 2 88 0 457 310 21 7 chrY 169392 169534 -24543545 - FRAM SINE Alu -32 144 1 2129 227 62 82 chrY 169653 169684 -24543395 - L1M4 LINE L1 -4488 1896 1866 2101 85 44 10 chrY 169684 169977 -24543102 + AluY SINE Alu 1 303 -8 2129 227 62 82 chrY 169977 170456 -24542623 - L1M4 LINE L1 -4518 1866 1379 623 217 16 0 chrY 170456 170585 -24542494 - FLAM_A SINE Alu -1 132 2 2129 227 62 82 chrY 170585 171232 -24541847 - L1M4 LINE L1 -5005 1379 859 2275 67 16 22 chrY 171232 171544 -24541535 + AluY SINE Alu 1 310 -1 2129 227 62 82 chrY 171544 171626 -24541453 - L1M4 LINE L1 -5525 859 777 21 36 0 0 chrY 172597 172625 -24540454 + AT_rich Low_complexity Low_complexity 1 28 0 180 0 0 0 chrY 174413 174433 -24538646 + (TTAA)n Simple_repeat Simple_repeat 1 20 0 2159 124 0 0 chrY 174439 174730 -24538349 - AluSx SINE Alu -21 291 1 512 268 7 7 chrY 175108 175246 -24537833 + AluSq/x SINE Alu 1 138 -175 771 208 169 0 chrY 175246 175453 -24537626 - AluSg SINE Alu -7 303 62 970 266 34 20 chrY 175466 175820 -24537259 + L1PB1 LINE L1 7 365 -6498 6501 196 49 118 chrY 175848 176700 -24536379 + L1PB1 LINE L1 2006 2915 -3952 2145 104 7 19 chrY 176700 177007 -24536072 + AluSg SINE Alu 1 303 -7 6501 196 49 118 chrY 177007 178476 -24534603 + L1PB1 LINE L1 2915 4484 -2383 238 226 52 87 chrY 178476 178591 -24534488 + LTR4 LTR ERV1 7 117 -479 6501 196 49 118 chrY 178591 178869 -24534210 + L1PB1 LINE L1 4484 4780 -2087 518 264 19 28 chrY 178869 179081 -24533998 + LTR4 LTR ERV1 385 594 -2 6501 196 49 118 chrY 179081 179983 -24533096 + L1PB1 LINE L1 4780 5743 -1124 2465 85 0 0 chrY 179983 180288 -24532791 + AluY SINE Alu 2 306 -5 6501 196 49 118 chrY 180288 181321 -24531758 + L1PB1 LINE L1 5743 6485 -382 1697 163 33 23 chrY 181321 181622 -24531457 + AluSx SINE Alu 1 304 -8 6501 196 49 118 chrY 181622 181980 -24531099 + L1PB1 LINE L1 6485 6866 -1 206 174 0 43 chrY 182368 182402 -24530677 + CT-rich Low_complexity Low_complexity 5 38 -10 2447 93 0 0 chrY 182402 182712 -24530367 - AluY SINE Alu -1 310 1 206 174 0 43 chrY 182712 182723 -24530356 + CT-rich Low_complexity Low_complexity 38 48 0 1240 197 32 29 chrY 182724 182875 -24530204 - AluJo SINE Alu -21 291 137 2132 135 3 3 chrY 182875 183171 -24529908 - AluSq SINE Alu -12 301 6 1240 197 32 29 chrY 183171 183298 -24529781 - AluJo SINE Alu -175 137 12 1632 206 0 13 chrY 183911 184212 -24528867 - AluJo SINE Alu -5 307 11 181 57 57 0 chrY 184222 184257 -24528822 + T-rich Low_complexity Low_complexity 1 37 0 284 323 16 16 chrY 185323 185447 -24527632 + MER21A LTR ERV1 550 673 -258 4786 119 53 12 chrY 185793 186542 -24526537 - LTR17 LTR ERV1 0 780 1 631 248 66 9 chrY 186570 186889 -24526190 - L1M4 LINE L1 -2912 3234 2898 695 203 86 16 chrY 186894 187081 -24525998 + LTR54 LTR ERV1 1 200 -310 455 178 0 0 chrY 187130 187220 -24525859 + L1M3f LINE L1 73 162 -5166 3469 234 82 19 chrY 187223 188383 -24524696 + L1M3f LINE L1 383 1704 -4624 252 0 0 0 chrY 188383 188411 -24524668 + (CA)n Simple_repeat Simple_repeat 2 29 0 3469 234 82 19 chrY 188411 189059 -24524020 + L1M3f LINE L1 1704 2310 -4018 408 194 28 0 chrY 189074 189146 -24523933 - AluJ/FRAM SINE Alu -23 289 216 5190 212 95 49 chrY 189170 191109 -24521970 + L1M3f LINE L1 2323 4350 -1978 2233 97 0 3 chrY 191109 191408 -24521671 + AluY SINE Alu 1 298 -13 189 45 45 45 chrY 191471 191515 -24521564 + (CAAAAA)n Simple_repeat Simple_repeat 2 45 0 698 193 0 7 chrY 191799 191949 -24521130 + LOR1b LTR ERV1 1 149 -312 3603 220 13 29 chrY 191952 192441 -24520638 - L1 LINE L1 -900 5246 4751 1039 181 206 34 chrY 192441 192733 -24520346 + MER61A LTR ERV1 2 343 0 3603 220 13 29 chrY 192733 193366 -24519713 - L1 LINE L1 -1395 4751 4142 1195 177 0 51 chrY 193372 193570 -24519509 + LOR1-int LTR ERV1 3663 3870 -4250 276 30 0 0 chrY 193570 193603 -24519476 + (TTA)n Simple_repeat Simple_repeat 1 33 0 7544 28 0 0 chrY 193604 195264 -24517815 - L1PA3 LINE L1 -18 6137 4488 1195 177 0 51 chrY 195264 195317 -24517762 + LOR1-int LTR ERV1 3869 3903 -4217 795 180 0 31 chrY 195339 195500 -24517579 + MER61A LTR ERV1 188 343 0 631 161 0 8 chrY 195501 195631 -24517448 - L1 LINE L1 -1371 4775 4647 1356 126 59 20 chrY 195631 195885 -24517194 + LOR1-int LTR ERV1 3916 4179 -3941 10393 122 9 1 chrY 195886 197571 -24515508 - L1P LINE L1 -3178 2968 1269 15692 91 9 0 chrY 197571 198054 -24515025 + L1PA7 LINE L1 3101 3578 -2576 1990 118 31 10 chrY 198054 198342 -24514737 - AluSc SINE Alu -15 294 1 15692 91 9 0 chrY 198342 200908 -24512171 + L1PA7 LINE L1 3578 6151 -3 429 130 26 13 chrY 201027 201104 -24511975 + THE1B LTR MaLR 287 364 0 694 217 30 18 chrY 201104 201270 -24511809 - THE1C LTR MaLR -207 168 1 452 64 73 82 chrY 201271 201354 -24511725 + LOR1-int LTR ERV1 4235 4318 -3802 1517 217 20 7 chrY 201354 201653 -24511426 - AluJb SINE Alu -9 303 1 452 64 73 82 chrY 201653 201679 -24511400 + LOR1-int LTR ERV1 4318 4343 -3777 785 149 8 0 chrY 201686 201820 -24511259 + LOR1-int LTR ERV1 5930 6064 -2056 1304 158 3 28 chrY 201914 202217 -24510862 + MER4A LTR ERV1 261 614 -50 2159 182 7 10 chrY 202229 202646 -24510433 + LOR1a LTR ERV1 82 497 0 2533 121 0 16 chrY 202654 203033 -24510046 + THE1C LTR MaLR 1 373 -2 1943 137 0 0 chrY 203306 203577 -24509502 - AluSx SINE Alu -2 310 40 373 211 44 114 chrY 203767 203994 -24509085 - L1MC5 LINE L1 -94 7867 7657 284 198 44 11 chrY 204033 204124 -24508955 + (TA)n Simple_repeat Simple_repeat 2 95 0 978 243 53 60 chrY 204152 204622 -24508457 - L1MC5 LINE L1 -370 7591 7125 1552 186 7 30 chrY 204838 205161 -24507918 - AluJb SINE Alu 0 316 1 1971 125 45 0 chrY 206142 206431 -24506648 - AluSg SINE Alu -5 305 4 1304 176 137 4 chrY 206461 206723 -24506356 - AluSp SINE Alu -10 303 7 625 226 8 0 chrY 206739 206863 -24506216 - FLAM_C SINE Alu -8 125 1 600 188 91 108 chrY 207059 207120 -24505959 + Charlie1b DNA MER1_type 7 67 -2694 2236 99 0 19 chrY 207120 207434 -24505645 + AluY SINE Alu 1 308 -3 600 188 91 108 chrY 207434 207558 -24505521 + Charlie1b DNA MER1_type 67 189 -334 276 202 134 123 chrY 207562 207854 -24505225 - L1MC4 LINE L1 -830 7131 6837 247 143 18 36 chrY 207851 207907 -24505172 + MLT1B-int LTR MaLR 1680 1734 -1 * 1396 188 122 14 chrY 207908 208260 -24504819 + MLT1B LTR MaLR 1 390 0 450 254 48 8 chrY 209202 209328 -24503751 + FRAM SINE Alu 22 152 -24 794 224 145 28 chrY 209470 209725 -24503354 - AluJo SINE Alu -17 295 11 354 261 92 7 chrY 209969 210111 -24502968 - AluJb SINE Alu -33 269 116 1601 107 110 52 chrY 213014 213305 -24499774 + AluSq SINE Alu 1 308 -5 2286 53 0 69 chrY 213781 214100 -24498979 - AluY SINE Alu -14 297 1 1898 144 10 0 chrY 214378 214669 -24498410 - AluSx SINE Alu -18 294 1 366 42 0 0 chrY 214775 214823 -24498256 + (TA)n Simple_repeat Simple_repeat 1 48 0 180 214 0 0 chrY 215505 215533 -24497546 + L2 LINE L2 3224 3251 -21 785 249 56 9 chrY 216552 216785 -24496294 + Charlie1b DNA MER1_type 12 255 -268 547 198 48 21 chrY 216818 217005 -24496074 + Charlie1b DNA MER1_type 326 517 -6 328 245 173 34 chrY 217026 217291 -24495788 - L1ME LINE L1 -319 5802 5473 1721 188 0 10 chrY 217291 217594 -24495485 - AluSx SINE Alu -12 300 1 328 245 173 34 chrY 217594 217696 -24495383 - L1ME LINE L1 -648 5473 5387 261 0 0 0 chrY 217726 217755 -24495324 + (TG)n Simple_repeat Simple_repeat 2 30 0 1166 215 0 69 chrY 217759 218047 -24495032 - AluJo SINE Alu -44 268 1 21 0 0 0 chrY 218070 218091 -24494988 + AT_rich Low_complexity Low_complexity 1 21 0 293 121 0 17 chrY 218120 218178 -24494901 - Alu SINE Alu 0 302 246 1557 160 3 78 chrY 218186 218517 -24494562 - AluJb SINE Alu -6 306 1 506 181 20 11 chrY 218518 218689 -24494390 - L1M4 LINE L1 -373 5783 5516 341 252 0 3 chrY 218847 219006 -24494073 + HsTC2 DNA Tc2 2 208 -1690 1723 145 30 46 chrY 219078 219381 -24493698 - AluSg SINE Alu -12 298 1 716 269 67 34 chrY 219567 219865 -24493214 + HsTC2 DNA Tc2 1273 1756 -142 418 278 121 64 chrY 220003 220284 -24492795 - L1M4 LINE L1 -2040 4106 3810 2140 117 10 0 chrY 220528 220837 -24492242 - AluSx SINE Alu 0 312 1 207 0 0 0 chrY 221253 221276 -24491803 + (TCCCC)n Simple_repeat Simple_repeat 4 26 0 1378 168 45 62 chrY 221276 221567 -24491512 - AluSx SINE Alu -26 286 1 22 35 0 0 chrY 221825 221854 -24491225 + AT_rich Low_complexity Low_complexity 1 29 0 842 138 0 15 chrY 221911 222041 -24491038 - FLAM_C SINE Alu -5 128 1 22 0 0 0 chrY 222483 222505 -24490574 + AT_rich Low_complexity Low_complexity 1 22 0 1892 102 6 70 chrY 222506 222821 -24490258 + AluSq SINE Alu 1 295 -18 274 309 108 0 chrY 224026 224165 -24488914 + MIR SINE MIR 83 236 -26 330 235 104 17 chrY 224345 224460 -24488619 + L1M4 LINE L1 4481 4605 -1541 1025 215 70 0 chrY 224705 224919 -24488160 - AluJo SINE Alu -77 235 7 1585 203 17 0 chrY 224928 225224 -24487855 - AluJb SINE Alu -11 301 1 1412 199 3 59 chrY 225342 225664 -24487415 + AluJb SINE Alu 2 305 -7 216 238 0 0 chrY 225666 225708 -24487371 + (CA)n Simple_repeat Simple_repeat 1 42 0 288 182 0 0 chrY 225798 225842 -24487237 - AluSp SINE Alu -130 173 130 1420 190 10 24 chrY 225846 226141 -24486938 - AluJb SINE Alu -21 291 1 2188 91 3 36 chrY 227711 228019 -24485060 - AluY SINE Alu -13 298 1 23 33 0 0 chrY 228171 228201 -24484878 + AT_rich Low_complexity Low_complexity 1 30 0 953 190 0 6 chrY 228490 228653 -24484426 + AluJo SINE Alu 121 282 -30 1381 186 41 30 chrY 228850 229145 -24483934 + AluJo SINE Alu 2 299 -3 489 216 24 24 chrY 229375 229500 -24483579 + FLAM_A SINE Alu 12 136 -6 1468 265 74 51 chrY 230045 230193 -24482886 - MLT1E2 LTR MaLR 0 626 483 1225 228 10 54 chrY 230193 230538 -24482541 + AluJo SINE Alu 1 332 0 1468 265 74 51 chrY 230538 230999 -24482080 - MLT1E2 LTR MaLR -143 483 2 760 291 101 55 chrY 231193 231630 -24481449 - MLT1E2-int LTR MaLR -223 1148 692 318 190 25 38 chrY 231722 231880 -24481199 + CT-rich Low_complexity Low_complexity 3 158 0 2679 126 25 25 chrY 231998 232435 -24480644 - MER1A DNA MER1_type 0 529 93 525 274 59 14 chrY 232495 232714 -24480365 - MLT1E2-int LTR MaLR -781 590 362 539 242 83 83 chrY 232716 232957 -24480122 - MLT1E2-int LTR MaLR -957 414 171 1721 181 17 10 chrY 232957 233255 -24479824 - AluJo SINE Alu -12 300 1 539 242 83 83 chrY 233255 233315 -24479764 - MLT1E2-int LTR MaLR -1199 172 113 387 137 27 14 chrY 233425 233498 -24479581 - MLT1E2-int LTR MaLR -1297 74 1 974 285 113 57 chrY 233506 234071 -24479008 - MLT1E2 LTR MaLR -9 617 21 266 246 0 0 chrY 234800 234857 -24478222 + AluJ/FLAM SINE Alu 36 92 -210 398 245 53 60 chrY 235100 235251 -24477828 - MIR SINE MIR -41 221 72 219 139 0 0 chrY 235641 235677 -24477402 + (T)n Simple_repeat Simple_repeat 1 36 0 265 155 17 17 chrY 235683 235741 -24477338 - HY3 scRNA scRNA -7 94 37 189 294 0 0 chrY 235912 235963 -24477116 + MIR SINE MIR 81 131 -77 243 254 0 0 chrY 236587 236658 -24476421 + T-rich Low_complexity Low_complexity 1 71 0 21 0 0 0 chrY 238675 238696 -24474383 + AT_rich Low_complexity Low_complexity 1 21 0 542 276 142 20 chrY 240292 240546 -24472533 + L1M4 LINE L1 9 293 -6249 1312 217 38 0 chrY 240555 240818 -24472261 + AluJo SINE Alu 15 287 -25 3117 246 83 39 chrY 240865 240929 -24472150 + L1M4 LINE L1 321 381 -6265 1722 153 0 51 chrY 240929 241242 -24471837 - AluSx SINE Alu -11 301 5 3117 246 83 39 chrY 241242 242555 -24470524 + L1M4 LINE L1 381 1769 -4877 222 37 0 0 chrY 242556 242583 -24470496 + (TCCC)n Simple_repeat Simple_repeat 4 30 0 459 147 0 0 chrY 242620 242695 -24470384 - AluS SINE Alu -15 296 222 1890 196 103 50 chrY 242700 243242 -24469837 + L1MB7 LINE L1 5557 6127 -57 2150 125 0 0 chrY 243358 243654 -24469425 - AluSx SINE Alu -14 298 3 641 261 111 17 chrY 243692 244046 -24469033 + HAL1b LINE L1 425 781 -567 2254 86 3 13 chrY 244101 244402 -24468677 - AluY SINE Alu -11 300 3 242 282 58 39 chrY 244534 244637 -24468442 - L2 LINE L2 -2 3311 3207 811 310 268 28 chrY 244851 245638 -24467441 - L2 LINE L2 -1323 1991 1016 242 330 86 25 chrY 246821 247018 -24466061 + L2 LINE L2 2531 2739 -575 21 0 0 0 chrY 247445 247466 -24465613 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chrY 247487 247508 -24465571 + AT_rich Low_complexity Low_complexity 1 21 0 1686 164 41 7 chrY 247578 247870 -24465209 + AluSx SINE Alu 1 302 -10 537 273 29 14 chrY 248600 248739 -24464340 + MIR SINE MIR 51 191 -71 1542 190 56 0 chrY 248855 249139 -24463940 - AluSx SINE Alu -12 300 1 1868 131 11 11 chrY 249957 250275 -24462804 - AluSx SINE Alu 0 318 1 1523 207 0 23 chrY 250458 250758 -24462321 + AluJo SINE Alu 1 293 -19 2918 73 0 3 chrY 251470 251851 -24461228 - L1PA8 LINE L1 -14 6158 5779 2278 90 0 17 chrY 251900 252200 -24460879 - AluSc SINE Alu -14 295 1 21 0 0 0 chrY 252432 252453 -24460626 + AT_rich Low_complexity Low_complexity 1 21 0 2470 82 0 16 chrY 252686 253002 -24460077 + AluY SINE Alu 1 311 0 2103 126 10 10 chrY 253290 253600 -24459479 + AluSx SINE Alu 1 310 -2 21 0 0 0 chrY 258249 258270 -24454809 + AT_rich Low_complexity Low_complexity 1 21 0 1620 184 3 32 chrY 258609 258924 -24454155 - AluJo SINE Alu -1 311 6 389 221 58 0 chrY 259141 259245 -24453834 - L1MB5 LINE L1 -11 6163 6054 30 0 0 0 chrY 259495 259525 -24453554 + AT_rich Low_complexity Low_complexity 1 30 0 413 254 27 18 chrY 259620 259730 -24453349 + MER5A DNA MER1_type 24 134 -55 671 180 225 4 chrY 259733 259977 -24453102 - L1MB2 LINE L1 -4 6167 5870 * 2855 242 70 68 chrY 259974 260063 -24453016 - L1M4c LINE L1 -2054 4372 4285 2026 136 3 0 chrY 260063 260358 -24452721 + AluSx SINE Alu 1 296 -16 1674 177 0 24 chrY 260363 260678 -24452401 + AluSx SINE Alu 3 310 0 2855 242 70 68 chrY 260678 260884 -24452195 - L1M4c LINE L1 -2144 4282 4078 2032 136 3 16 chrY 260884 261193 -24451886 - AluSq SINE Alu -8 305 1 1954 137 3 45 chrY 261203 261517 -24451562 - AluSx SINE Alu -11 301 1 2855 242 70 68 chrY 261517 261640 -24451439 - L1M4c LINE L1 -2356 4070 3949 1330 230 42 11 chrY 261640 261923 -24451156 - AluJo SINE Alu -20 292 1 2855 242 70 68 chrY 261923 262040 -24451039 - L1M4c LINE L1 -2477 3949 3834 1624 202 14 3 chrY 262040 262391 -24450688 - L1PA16 LINE L1 -14 6152 5798 2855 242 70 68 chrY 262391 262553 -24450526 - L1M4c LINE L1 -2592 3834 3674 1928 141 17 7 chrY 262553 262844 -24450235 - AluSx SINE Alu -18 294 1 2855 242 70 68 chrY 262844 263056 -24450023 - L1M4c LINE L1 -2752 3674 3464 2069 102 6 67 chrY 263056 263371 -24449708 - AluY SINE Alu -15 296 1 2855 242 70 68 chrY 263371 263640 -24449439 - L1M4c LINE L1 -2962 3464 3197 491 258 0 23 chrY 263640 263768 -24449311 - FLAM_A SINE Alu -8 125 1 2855 242 70 68 chrY 263768 264216 -24448863 - L1M4c LINE L1 -3229 3197 2751 9150 176 28 11 chrY 264216 264530 -24448549 - L1PA13 LINE L1 -4 6159 5852 2288 121 0 0 chrY 264530 264837 -24448242 - AluSg SINE Alu -3 307 1 9150 176 28 11 chrY 264837 265338 -24447741 - L1PA13 LINE L1 -311 5852 5361 2419 89 0 3 chrY 265338 265640 -24447439 - AluY SINE Alu -10 301 1 9150 176 28 11 chrY 265640 267450 -24445629 - L1PA13 LINE L1 -802 5361 3479 2855 242 70 68 chrY 267450 267645 -24445434 - L1M4c LINE L1 -3675 2751 2523 195 129 0 0 chrY 267723 267754 -24445325 + (T)n Simple_repeat Simple_repeat 1 31 0 1727 184 21 0 chrY 267769 268057 -24445022 - AluSx SINE Alu -12 300 7 645 186 108 44 chrY 268080 268375 -24444704 - L1M4c LINE L1 -3979 2449 2136 582 208 26 3 chrY 268435 268608 -24444471 - L1M4c LINE L1 -4707 1721 1539 251 306 22 30 chrY 268635 268769 -24444310 - L1M4c LINE L1 -6008 349 217 260 171 26 118 chrY 268832 268908 -24444171 + MER5A DNA MER1_type 121 189 0 2177 133 0 3 chrY 269002 269310 -24443769 + AluSx SINE Alu 1 307 -5 229 311 0 0 chrY 269843 269917 -24443162 + (TATG)n Simple_repeat Simple_repeat 3 76 0 928 147 179 62 chrY 270130 270354 -24442725 - AluJb SINE Alu -54 258 9 399 188 134 0 chrY 270398 270510 -24442569 - L1 LINE L1 -1286 4860 4734 3391 196 57 82 chrY 271065 271765 -24441314 - L1 LINE L1 -1913 4233 3491 493 191 0 0 chrY 271765 271849 -24441230 - AluJb SINE Alu -17 295 212 3391 196 57 82 chrY 271849 272310 -24440769 - L1 LINE L1 -2655 3491 3020 2619 207 52 3 chrY 272323 272957 -24440122 + L1MA7 LINE L1 5615 6279 -12 359 218 0 0 chrY 272958 273045 -24440034 + L1MB2 LINE L1 6051 6137 -34 3867 129 25 134 chrY 273184 274733 -24438346 - pTR5 LTR ERV1 0 2606 1524 548 160 109 51 chrY 275186 275342 -24437737 + MER65A LTR ERV1 2 166 -279 1991 173 70 2 chrY 275457 275856 -24437223 - MSTA LTR MaLR -2 426 1 943 174 26 10 chrY 275874 276184 -24436895 + MER65A LTR ERV1 166 445 0 502 145 13 0 chrY 276255 276331 -24436748 - AluS SINE Alu -230 82 6 591 259 112 0 chrY 276351 276637 -24436442 + L1MB2 LINE L1 4105 4422 -1724 1753 164 7 14 chrY 276639 276931 -24436148 - AluSp SINE Alu -22 291 2 2072 203 46 5 chrY 276931 277892 -24435187 + L1MB2 LINE L1 5121 6163 -8 2675 148 93 22 chrY 278228 278784 -24434295 + LTR4 LTR ERV1 1 596 0 12080 160 55 21 chrY 278784 281010 -24432069 + HERV3 LTR ERV1 2 2302 -6124 1819 252 5 2 chrY 281023 281447 -24431632 + HERV3 LTR ERV1 2729 3153 -5273 2271 126 12 0 chrY 281462 281803 -24431276 + HERV3 LTR ERV1 5421 5765 -2661 2311 143 24 7 chrY 281803 282223 -24430856 + LTR4 LTR ERV1 170 596 0 455 315 79 57 chrY 282573 283014 -24430065 + LTR67 LTR ERVL 2 452 -105 283 284 46 0 chrY 283141 283250 -24429829 - LTR33 LTR ERVL -41 480 367 420 311 74 26 chrY 283515 283827 -24429252 + LTR40b LTR ERVL 135 461 -1 453 291 97 0 chrY 283886 284082 -24428997 - LTR33 LTR ERVL -306 215 1 6806 204 149 15 chrY 284384 285932 -24427147 - MER52A LTR ERV1 0 1755 1 516 206 41 0 chrY 285976 286073 -24427006 + AluJ/FLAM SINE Alu 1 101 -211 27 49 0 0 chrY 286925 286966 -24426113 + AT_rich Low_complexity Low_complexity 1 41 0 432 258 55 73 chrY 287339 287777 -24425302 - L1MC5 LINE L1 -368 7593 7164 379 219 0 0 chrY 287800 287882 -24425197 + MER45A DNA AcHobo 97 178 0 2603 133 36 2 chrY 288181 288625 -24424454 - MER4E-int LTR ERV1 -6299 459 1 4791 104 33 13 chrY 288625 289176 -24423903 - MER4E LTR ERV1 0 766 195 1607 161 8 4 chrY 289176 289431 -24423648 + AluY SINE Alu 39 294 -17 4791 104 33 13 chrY 289431 289630 -24423449 - MER4E LTR ERV1 -571 195 1 1221 201 21 61 chrY 289675 290004 -24423075 - LTR62 LTR ERVK -403 316 1 2248 102 0 3 chrY 290204 290507 -24422572 - AluY SINE Alu -9 302 1 252 167 0 0 chrY 290539 290587 -24422492 + (TTCA)n Simple_repeat Simple_repeat 1 48 0 230 158 18 35 chrY 290609 290666 -24422413 - LTR56 LTR ERV1 -381 64 9 2485 195 46 20 chrY 290767 291358 -24421721 - MER4B LTR ERV1 -4 606 1 410 159 53 61 chrY 291451 291583 -24421496 - MER4B-int LTR ERV1 -151 4972 4842 383 145 0 0 chrY 291662 291724 -24421355 - MER4A LTR ERV1 0 664 603 1731 89 12 0 chrY 291724 291983 -24421096 - L1P LINE L1 -1332 4814 4553 1808 102 0 37 chrY 291983 292277 -24420802 - L1P LINE L1 -2229 3917 3635 3528 99 25 14 chrY 292280 292844 -24420235 - L1P LINE L1 -1635 4511 3942 1581 205 7 13 chrY 293038 293341 -24419738 - AluSx SINE Alu -11 301 1 1896 157 14 0 chrY 293381 293675 -24419404 - AluSq SINE Alu -14 299 2 1227 70 0 64 chrY 294975 295162 -24417917 - AluY SINE Alu -24 287 113 3386 160 56 3 chrY 295208 295820 -24417259 - LTR9B LTR ERV1 0 644 1 2388 69 3 31 chrY 296331 296651 -24416428 + AluY SINE Alu 1 311 0 880 168 125 87 chrY 297724 298045 -24415034 - LTR56 LTR ERV1 -108 337 5 203 269 177 28 chrY 298224 298365 -24414714 - MIR SINE MIR -34 228 67 2034 193 7 7 chrY 298427 298877 -24414202 - L1PA13 LINE L1 -4590 2197 1748 591 115 10 10 chrY 298875 298979 -24414100 - L1PA13 LINE L1 -6625 162 59 * 3883 142 29 5 chrY 298982 299628 -24413451 - PABL_B LTR ERV1 -5 662 1 261 218 0 0 chrY 299629 299684 -24413395 - L1PA13 LINE L1 -6732 55 1 2646 276 81 31 chrY 299862 300282 -24412797 - L1M4 LINE L1 -2012 5553 5155 2124 120 0 25 chrY 300282 300598 -24412481 - AluSc SINE Alu -1 308 1 2646 276 81 31 chrY 300598 300708 -24412371 - L1M4 LINE L1 -2410 5155 5052 1755 163 11 0 chrY 300708 300984 -24412095 - AluSx SINE Alu -33 279 1 2646 276 81 31 chrY 300984 302263 -24410816 - L1M4 LINE L1 -2513 5052 3653 24 85 0 0 chrY 302293 302352 -24410727 + AT_rich Low_complexity Low_complexity 1 59 0 28040 62 4 1 chrY 302644 308786 -24404293 - L1PA6 LINE L1 -1 6153 3 10949 179 57 10 chrY 308787 310971 -24402108 - L1M4 LINE L1 -4220 3345 1060 841 153 6 6 chrY 310977 311140 -24401939 + CT-rich Low_complexity Low_complexity 3 165 0 852 194 19 0 chrY 311143 311303 -24401776 - AluSg/x SINE Alu -5 307 145 581 214 40 0 chrY 311918 312044 -24401035 - MLT1A1 LTR MaLR 0 365 235 1218 211 146 44 chrY 312944 313356 -24399723 + MSTB2 LTR MaLR 4 457 0 216 298 160 0 chrY 313373 313467 -24399612 - MIR SINE MIR -66 196 88 1743 167 3 16 chrY 313593 313899 -24399180 - AluSx SINE Alu 0 312 11 214 273 0 0 chrY 313984 314028 -24399051 - MER5B DNA MER1_type -1 177 134 909 203 5 0 chrY 314037 314224 -24398855 + L1PA15 LINE L1 5972 6159 -6 5413 134 25 17 chrY 314224 315152 -24397927 + L1MA2 LINE L1 5369 6303 -1 24 32 0 0 chrY 315212 315243 -24397836 + AT_rich Low_complexity Low_complexity 1 31 0 1967 154 31 58 chrY 315278 315726 -24397353 + LTR19A LTR ERV1 1 436 -50 1536 142 3 75 chrY 315726 316008 -24397071 - AluJb SINE Alu -36 276 15 901 333 23 26 chrY 316148 316575 -24396504 - LTR16B LTR ERVL -2 462 37 254 232 18 0 chrY 316702 316758 -24396321 + MLT1J LTR MaLR 110 166 -345 183 80 0 0 chrY 316985 317010 -24396069 + (A)n Simple_repeat Simple_repeat 1 25 0 366 145 0 0 chrY 317012 317074 -24396005 + LTR19A LTR ERV1 425 486 0 1843 171 7 0 chrY 317302 317595 -24395484 - AluSx SINE Alu -17 295 1 210 37 0 0 chrY 317908 317935 -24395144 + (TTG)n Simple_repeat Simple_repeat 1 27 0 683 268 145 11 chrY 318469 318738 -24394341 - MER2 DNA MER2_type -1 344 40 536 241 96 8 chrY 319052 319241 -24393838 + L1MB4 LINE L1 5907 6120 -60 942 242 33 5 chrY 319245 319456 -24393623 + AluJo SINE Alu 78 294 -18 2655 236 64 70 chrY 319548 320966 -24392113 - L1MD1 LINE L1 -10 6232 4822 185 333 16 57 chrY 321005 321128 -24391951 + MIR SINE MIR 43 160 -102 213 121 0 0 chrY 322609 322642 -24390437 + (TCCC)n Simple_repeat Simple_repeat 4 36 0 * 973 199 106 43 chrY 322641 323104 -24389975 - AluJo SINE Alu 0 493 13 10078 150 29 5 chrY 323132 325705 -24387374 - L1PA10 LINE L1 -3 6165 3551 15113 156 29 47 chrY 325709 332279 -24380800 - L1PB1 LINE L1 -278 6589 127 180 392 65 30 chrY 332347 332579 -24380500 - L2 LINE L2 -582 2732 2493 38 39 0 0 chrY 332690 332742 -24380337 + AT_rich Low_complexity Low_complexity 1 52 0 308 298 33 8 chrY 333456 333577 -24379502 + L2 LINE L2 2934 3057 -215 217 132 26 0 chrY 334224 334262 -24378817 - L2 LINE L2 -3 3310 3272 3923 214 55 33 chrY 336937 337430 -24375649 - L1MC2 LINE L1 -2 6342 5861 2412 71 13 0 chrY 337430 337739 -24375340 - AluSp SINE Alu 0 313 1 3923 214 55 33 chrY 337739 338931 -24374148 - L1MC2 LINE L1 -483 5861 4617 24 0 0 0 chrY 338975 338999 -24374080 + AT_rich Low_complexity Low_complexity 1 24 0 29 0 0 0 chrY 339467 339496 -24373583 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chrY 339543 339568 -24373511 + AT_rich Low_complexity Low_complexity 1 25 0 195 42 0 0 chrY 339580 339604 -24373475 + (TG)n Simple_repeat Simple_repeat 2 25 0 24 32 0 0 chrY 340142 340173 -24372906 + AT_rich Low_complexity Low_complexity 1 31 0 234 62 0 0 chrY 340804 340836 -24372243 + (TTTTG)n Simple_repeat Simple_repeat 1 32 0 352 100 0 0 chrY 340843 340893 -24372186 - Alu SINE Alu -27 274 225 942 168 7 0 chrY 340893 341042 -24372037 - AluSq SINE Alu -160 153 4 2472 57 0 7 chrY 341846 342144 -24370935 - AluY SINE Alu -15 296 1 1030 281 44 19 chrY 342182 342499 -24370580 + L1MCc LINE L1 892 1216 -5207 324 265 144 8 chrY 342561 342693 -24370386 + Zaphod DNA AcHobo 3854 4003 -28 266 276 80 35 chrY 342974 343173 -24369906 - L1M4 LINE L1 -611 5573 5366 258 253 63 25 chrY 343184 343263 -24369816 - L2 LINE L2 -1 3312 3231 1111 267 48 23 chrY 344789 345230 -24367849 - MLT1H LTR MaLR 0 549 75 3591 222 23 15 chrY 345241 346315 -24366764 + L1P4 LINE L1 4398 5476 -689 645 124 10 0 chrY 346355 346452 -24366627 + AluY SINE Alu 95 192 -119 2430 137 15 33 chrY 346453 346880 -24366199 - L1PA16 LINE L1 -261 5905 5485 2373 96 3 0 chrY 346880 347192 -24365887 - AluSp SINE Alu 0 313 1 2430 137 15 33 chrY 347192 347218 -24365861 - L1PA16 LINE L1 -681 5485 5460 1517 97 0 0 chrY 347218 347432 -24365647 + L1PA14 LINE L1 5942 6157 -4 984 285 40 14 chrY 347560 347984 -24365095 - L1M4 LINE L1 -2448 3698 3264 192 40 0 0 chrY 348041 348066 -24365013 + (ATG)n Simple_repeat Simple_repeat 2 26 0 23 0 0 0 chrY 348120 348143 -24364936 + AT_rich Low_complexity Low_complexity 1 23 0 230 303 0 15 chrY 348181 348247 -24364832 - MIR SINE MIR -165 97 33 804 198 48 52 chrY 348292 348544 -24364535 + pTR5 LTR ERV1 743 993 -1445 3949 118 72 35 chrY 348611 349273 -24363806 + LTR12 LTR ERV1 1 687 -1 1656 155 11 11 chrY 349353 349624 -24363455 + AluSx SINE Alu 1 271 -41 277 118 43 21 chrY 349626 349719 -24363360 + (TTATA)n Simple_repeat Simple_repeat 5 99 0 370 296 91 26 chrY 350201 350431 -24362648 - L1ME4a LINE L1 -179 5942 5698 222 37 0 0 chrY 350433 350460 -24362619 + (TG)n Simple_repeat Simple_repeat 2 28 0 1608 186 13 13 chrY 350664 350975 -24362104 - AluJo SINE Alu -1 311 1 30 27 0 0 chrY 351034 351071 -24362008 + AT_rich Low_complexity Low_complexity 1 37 0 1858 183 70 79 chrY 351421 351980 -24361099 - MLT2B3 LTR ERVL 0 554 1 261 255 106 21 chrY 352412 352506 -24360573 + MIR SINE MIR 124 225 -37 321 201 43 30 chrY 353801 353965 -24359114 + (TA)n Simple_repeat Simple_repeat 2 167 0 210 208 0 0 chrY 353971 354019 -24359060 + (CATATA)n Simple_repeat Simple_repeat 5 52 0 1511 157 36 25 chrY 354130 354410 -24358669 + AluJo SINE Alu 12 294 -18 1008 194 16 42 chrY 354592 354814 -24358265 + L1MDa LINE L1 1106 1319 -5221 1888 218 5 20 chrY 354814 355214 -24357865 + MSTD LTR MaLR 3 396 0 1008 194 16 42 chrY 355214 355300 -24357779 + L1MDa LINE L1 1319 1406 -5134 326 202 36 24 chrY 355320 355404 -24357675 + MER45C DNA AcHobo 528 612 -341 1001 251 31 0 chrY 355618 356041 -24357038 - L1M4 LINE L1 -2961 3185 2750 698 273 80 0 chrY 356048 356286 -24356793 + L1MDa LINE L1 2931 3187 -3353 201 175 0 0 chrY 356375 356415 -24356664 + (TA)n Simple_repeat Simple_repeat 1 40 0 486 170 98 45 chrY 356417 356529 -24356550 + Tigger7 DNA MER2_type 2374 2491 0 465 253 19 6 chrY 356529 356691 -24356388 - L1MCa LINE L1 -3712 2714 2551 424 171 0 0 chrY 356716 356804 -24356275 - L1MA4 LINE L1 0 6300 6213 613 189 12 30 chrY 356804 356956 -24356123 - L1MCa LINE L1 -3892 2536 2414 796 266 40 0 chrY 357199 357376 -24355703 + L1PA13 LINE L1 1 184 -6603 2240 232 18 11 chrY 357388 357935 -24355144 + L1PA13 LINE L1 1728 2278 -4509 281 132 0 19 chrY 357974 358027 -24355052 + (TA)n Simple_repeat Simple_repeat 1 52 0 231 186 0 17 chrY 358028 358087 -24354992 - L1MCa LINE L1 -4363 2063 2006 231 186 0 17 chrY 358112 358171 -24354908 - L1MCa LINE L1 -4363 2063 2006 188 108 0 27 chrY 358175 358212 -24354867 + (TA)n Simple_repeat Simple_repeat 2 37 0 311 270 0 0 chrY 358212 358286 -24354793 + L1PA13 LINE L1 2376 2449 -4348 5392 144 6 2 chrY 358286 359832 -24353247 + L1PA15 LINE L1 4593 6146 -19 418 343 33 9 chrY 359900 360110 -24352969 - L1M4 LINE L1 -1548 4598 4384 24 0 0 0 chrY 360121 360145 -24352934 + AT_rich Low_complexity Low_complexity 1 24 0 5153 203 16 19 chrY 360233 362377 -24350702 - L1PA15 LINE L1 -16 6149 4020 325 71 0 0 chrY 362371 362413 -24350666 - L1P LINE L1 -972 5174 5133 * 529 263 41 0 chrY 362432 362603 -24350476 + L1M4b LINE L1 1326 1503 -5356 7236 214 17 67 chrY 362638 363368 -24349711 - L1P LINE L1 -1023 5123 4358 1689 168 16 13 chrY 363368 363671 -24349408 - AluJb SINE Alu -4 308 5 7236 214 17 67 chrY 363671 363878 -24349201 - L1P LINE L1 -1788 4358 4142 3858 107 32 11 chrY 363878 364505 -24348574 + MER51C LTR ERV1 1 640 0 7236 214 17 67 chrY 364505 365761 -24347318 - L1P LINE L1 -2004 4142 3039 2083 297 69 25 chrY 365766 367143 -24345936 - L1M4b LINE L1 -5331 1528 12 1973 122 20 3 chrY 367538 367841 -24345238 + AluSg SINE Alu 1 308 -2 305 369 20 30 chrY 368376 368574 -24344505 + L1 LINE L1 3631 3826 -2320 418 195 35 44 chrY 368909 369022 -24344057 + Charlie4 DNA MER1_type 1835 1946 -15 417 331 24 52 chrY 369034 369282 -24343797 + LTR33 LTR ERVL 260 500 -21 944 313 74 18 chrY 370551 370941 -24342138 - L2 LINE L2 -447 2867 2456 207 204 0 0 chrY 371029 371073 -24342006 + GA-rich Low_complexity Low_complexity 3 46 0 514 179 28 9 chrY 371236 371342 -24341737 - L1MA1 LINE L1 -4 6298 6191 809 287 35 8 chrY 371541 371795 -24341284 - L2 LINE L2 -853 2461 2201 189 0 0 0 chrY 372167 372188 -24340891 + (CA)n Simple_repeat Simple_repeat 2 22 0 2942 115 23 6 chrY 373892 374372 -24338707 - L1MA3 LINE L1 0 6305 5818 362 85 17 0 chrY 374844 374903 -24338176 + (TAGA)n Simple_repeat Simple_repeat 2 61 0 2122 245 32 14 chrY 374905 375434 -24337645 - MLT2B3 LTR ERVL -19 507 1 1077 95 25 0 chrY 375679 375837 -24337242 - L1MA3 LINE L1 0 6305 6144 225 94 0 0 chrY 375838 375870 -24337209 + L1MA3 LINE L1 5929 5960 -345 1523 197 42 52 chrY 376052 376458 -24336621 - MER39 LTR ERV1 0 707 306 1387 173 54 45 chrY 376659 376879 -24336200 - MER44D DNA MER2_type -1883 608 391 213 39 0 0 chrY 376879 376905 -24336174 + (TC)n Simple_repeat Simple_repeat 1 26 0 1387 173 54 45 chrY 376905 377019 -24336060 - MER44D DNA MER2_type -2100 391 1 541 176 11 0 chrY 377615 377706 -24335373 + MLT1D LTR MaLR 1 92 -413 247 303 55 9 chrY 377866 377975 -24335104 - L1ME LINE L1 -477 5644 5531 324 0 0 0 chrY 378087 378123 -24334956 + (TG)n Simple_repeat Simple_repeat 2 37 0 677 243 87 0 chrY 378188 378361 -24334718 + MER20 DNA MER1_type 31 218 -1 238 136 17 17 chrY 378738 378797 -24334282 + (TG)n Simple_repeat Simple_repeat 2 60 0 532 297 25 29 chrY 378981 379233 -24333846 - L1ME3A LINE L1 -290 5880 5669 329 259 133 7 chrY 379249 379384 -24333695 - Charlie2a DNA MER1_type 0 2862 2711 * 467 247 77 12 chrY 379380 379550 -24333529 - Charlie2a DNA MER1_type -1200 1662 1482 399 325 81 10 chrY 379762 379959 -24333120 - Charlie2a DNA MER1_type -2555 307 97 616 295 89 47 chrY 380221 380624 -24332455 - LTR38 LTR ERV1 0 556 137 339 338 92 29 chrY 380683 381403 -24331676 - L1ME LINE L1 -749 5397 4633 348 309 65 22 chrY 381469 381883 -24331196 - L1ME LINE L1 -3158 2988 2557 404 236 11 0 chrY 381938 382027 -24331052 - Tigger5 DNA MER2_type 0 2323 2234 362 233 0 0 chrY 382078 382151 -24330928 - Tigger5 DNA MER2_type 0 2323 2251 240 284 0 0 chrY 382170 382244 -24330835 + (TA)n Simple_repeat Simple_repeat 2 75 0 258 278 0 0 chrY 382325 382415 -24330664 - L1ME LINE L1 -3783 2363 2274 22 56 0 0 chrY 383120 383156 -24329923 + AT_rich Low_complexity Low_complexity 1 36 0 24 53 0 0 chrY 383573 383611 -24329468 + AT_rich Low_complexity Low_complexity 1 38 0 9287 207 15 18 chrY 383960 385224 -24327855 + L1P LINE L1 2304 3560 -2586 255 103 0 0 chrY 385224 385263 -24327816 + (TG)n Simple_repeat Simple_repeat 2 40 0 9287 207 15 18 chrY 385263 386055 -24327024 + L1P LINE L1 3560 4353 -1793 439 319 79 37 chrY 386224 386795 -24326284 - L1ME3A LINE L1 -300 5870 5276 255 255 125 25 chrY 386832 387032 -24326047 - L1ME3A LINE L1 -913 5233 5014 266 91 0 55 chrY 387047 387102 -24325977 - AluSp/q SINE Alu -5 298 247 2206 123 0 0 chrY 387366 387675 -24325404 - AluSx SINE Alu -3 309 1 757 231 72 57 chrY 388285 388643 -24324436 + MLT2B2 LTR ERVL 1 453 -62 476 26 65 0 chrY 388643 388720 -24324359 + (TCTA)n Simple_repeat Simple_repeat 3 84 0 757 231 72 57 chrY 388720 388784 -24324295 + MLT2B2 LTR ERVL 453 515 0 315 258 88 57 chrY 388822 389016 -24324063 - L1ME3A LINE L1 -1664 4482 4283 320 358 95 15 chrY 389314 389588 -24323491 - L1ME3A LINE L1 -1834 4312 4017 267 336 88 15 chrY 389711 390053 -24323026 - L1ME3A LINE L1 -2227 3919 3553 443 224 195 29 chrY 390181 390427 -24322652 - L1ME3A LINE L1 -2664 3482 3196 538 259 92 80 chrY 390439 390863 -24322216 + LTR68 LTR ERV1 1 429 -311 423 215 86 57 chrY 391013 391222 -24321857 - L1ME3A LINE L1 -2961 3185 2971 1259 260 34 47 chrY 391526 391738 -24321341 - L1MD2 LINE L1 -2 6357 6144 1909 160 3 6 chrY 391738 392050 -24321029 - AluSx SINE Alu -1 311 1 1259 260 34 47 chrY 392050 392280 -24320799 - L1MD2 LINE L1 -215 6144 5921 555 128 0 0 chrY 392362 392448 -24320631 - L1P4 LINE L1 -523 5638 5553 753 103 8 23 chrY 392458 392728 -24320351 + (TA)n Simple_repeat Simple_repeat 1 266 0 2961 136 12 10 chrY 392728 393229 -24319850 + L1PA14 LINE L1 5658 6159 -2 627 257 229 43 chrY 393498 393778 -24319301 + L1M4b LINE L1 91 422 -6437 527 265 73 0 chrY 393789 393925 -24319154 + L1M4b LINE L1 1130 1275 -5584 2145 273 45 11 chrY 393957 394920 -24318159 - L1MDb LINE L1 -2935 3471 2477 226 176 39 0 chrY 394900 394951 -24318128 + L1MA9 LINE L1 6254 6306 -6 * 1217 255 45 48 chrY 394960 395835 -24317244 - L1MDb LINE L1 -3900 2508 1543 2242 153 50 13 chrY 395858 396323 -24316756 - L1MA3 LINE L1 0 6305 5824 212 158 0 0 chrY 396366 396404 -24316675 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 6157 220 49 10 chrY 396482 397864 -24315215 + L1M3 LINE L1 118 1553 -5310 4373 120 1 3 chrY 397863 398519 -24314560 + L1PB2 LINE L1 5380 6034 -117 * 2190 198 34 15 chrY 398526 399369 -24313710 + L1M3 LINE L1 5564 6426 -458 381 287 41 0 chrY 399368 399540 -24313539 - L1MDb LINE L1 -5542 867 663 * 274 335 151 11 chrY 399549 399734 -24313345 - L1MDb LINE L1 -5822 587 377 * 1263 309 60 35 chrY 399720 400284 -24312795 - L1MDb LINE L1 -5810 599 22 350 325 13 44 chrY 400321 400461 -24312618 - L1MEc LINE L1 -3611 2518 2386 1378 259 117 45 chrY 400461 401043 -24312036 - MLT1E2 LTR MaLR -2 624 1 350 325 13 44 chrY 401043 401130 -24311949 - L1MEc LINE L1 -3743 2386 2298 489 334 119 39 chrY 401168 402103 -24310976 - L1MEc LINE L1 -4049 2261 1252 387 301 51 10 chrY 402164 402360 -24310719 - L1MEc LINE L1 -4969 1150 947 23 0 0 0 chrY 402364 402387 -24310692 + AT_rich Low_complexity Low_complexity 1 23 0 362 291 72 66 chrY 403354 403725 -24309354 - L1MEc LINE L1 -5146 989 571 324 308 0 0 chrY 404004 404121 -24308958 - MER103 DNA DNA -48 118 2 231 61 0 0 chrY 404378 404411 -24308668 + (CA)n Simple_repeat Simple_repeat 2 34 0 1310 158 45 17 chrY 406333 406625 -24306454 + L1MA8 LINE L1 5987 6286 -5 1836 134 113 30 chrY 407381 407717 -24305362 + THE1B LTR MaLR 1 364 0 417 208 40 40 chrY 408143 408268 -24304811 + MER112 DNA MER1_type 84 208 -52 22 70 0 0 chrY 408443 408486 -24304593 + AT_rich Low_complexity Low_complexity 1 43 0 21 36 0 0 chrY 408620 408648 -24304431 + AT_rich Low_complexity Low_complexity 1 28 0 221 327 93 9 chrY 408959 409066 -24304013 + L2 LINE L2 3153 3268 -4 192 150 50 0 chrY 409130 409170 -24303909 + L2 LINE L2 3271 3312 -1 734 239 35 70 chrY 409822 410081 -24302998 - L1ME2 LINE L1 -1 6163 5914 381 275 50 39 chrY 410084 410364 -24302715 - L1ME2 LINE L1 -329 5835 5553 235 364 35 38 chrY 410858 411036 -24302043 + MIR3 SINE MIR 18 167 -41 942 247 56 3 chrY 412254 412606 -24300473 - L1MC3 LINE L1 -201 6143 5742 758 153 0 0 chrY 412616 412740 -24300339 - L1PA15 LINE L1 -3 6162 6039 4387 101 38 0 chrY 412917 413553 -24299526 + HERVL-A2 LTR ERVL 4995 5654 0 429 102 0 0 chrY 413553 413612 -24299467 + MLT2A2 LTR ERVL 1 59 -394 3180 139 5 10 chrY 413612 414173 -24298906 - L1PA15 LINE L1 -386 5779 5220 * 3728 216 29 1 chrY 414170 414975 -24298104 + L1P LINE L1 1831 2657 -3489 556 245 95 15 chrY 415015 415308 -24297771 - MER52A LTR ERV1 -148 894 275 680 257 29 11 chrY 415349 415524 -24297555 - LTR28 LTR ERV1 -842 178 1 1294 245 17 0 chrY 415526 415873 -24297206 + L1P LINE L1 2660 3012 -3134 2007 132 46 34 chrY 417297 417646 -24295433 - THE1B LTR MaLR -11 353 1 9496 137 75 0 chrY 417646 419116 -24293963 - THE1B-int LTR MaLR 0 1580 1 1949 146 36 36 chrY 419116 419479 -24293600 - THE1B LTR MaLR 0 364 2 388 325 34 3 chrY 419558 419698 -24293381 - MIR SINE MIR -63 145 25 183 364 24 73 chrY 419691 419897 -24293182 + L2 LINE L2 2438 2633 -681 * 1168 268 47 14 chrY 420224 420479 -24292600 + L1ME1 LINE L1 4822 5067 -1079 552 100 0 0 chrY 420479 420559 -24292520 + (TA)n Simple_repeat Simple_repeat 1 80 0 1168 268 47 14 chrY 420559 420796 -24292283 + L1ME1 LINE L1 5067 5330 -816 2051 156 43 0 chrY 420804 421151 -24291928 - THE1B LTR MaLR -2 362 1 8356 124 115 40 chrY 421151 422621 -24290458 - THE1B-int LTR MaLR 0 1580 1 2570 123 0 3 chrY 422621 422986 -24290093 - THE1B LTR MaLR 0 364 1 1574 281 78 33 chrY 422990 423326 -24289753 + L1ME1 LINE L1 5333 5652 -514 315 0 0 0 chrY 423326 423361 -24289718 + (CA)n Simple_repeat Simple_repeat 2 36 0 1574 281 78 33 chrY 423361 423803 -24289276 + L1ME1 LINE L1 5652 6146 -20 18128 181 30 15 chrY 423953 431559 -24281520 - L1MA1 LINE L1 0 7721 7 328 350 13 32 chrY 431692 431849 -24281230 - L2 LINE L2 -12 3301 3148 2925 199 24 13 chrY 431849 432468 -24280611 - MSTB-int LTR MaLR -992 659 34 1531 231 81 13 chrY 432487 432881 -24280198 - MSTB LTR MaLR -5 421 1 21 36 0 0 chrY 433543 433571 -24279508 + AT_rich Low_complexity Low_complexity 1 28 0 1146 207 97 60 chrY 434118 434470 -24278609 + MLT1A1 LTR MaLR 1 365 0 1417 239 0 13 chrY 434724 435038 -24278041 + AluJo SINE Alu 1 310 -2 21 57 0 0 chrY 435229 435264 -24277815 + AT_rich Low_complexity Low_complexity 1 35 0 23 78 0 0 chrY 435558 435609 -24277470 + AT_rich Low_complexity Low_complexity 1 51 0 34 0 0 0 chrY 436106 436140 -24276939 + AT_rich Low_complexity Low_complexity 1 34 0 2262 147 39 0 chrY 436384 436745 -24276334 - THE1C LTR MaLR 0 375 1 8822 136 57 37 chrY 436745 438295 -24274784 - THE1C-int LTR MaLR 0 1580 1 2573 121 5 0 chrY 438295 438668 -24274411 - THE1C LTR MaLR 0 375 1 28 86 0 0 chrY 439214 439284 -24273795 + AT_rich Low_complexity Low_complexity 1 70 0 39 38 0 0 chrY 439362 439415 -24273664 + AT_rich Low_complexity Low_complexity 1 53 0 21 36 0 0 chrY 440040 440068 -24273011 + AT_rich Low_complexity Low_complexity 1 28 0 1518 218 0 19 chrY 440367 440674 -24272405 - AluJb SINE Alu -9 303 3 2001 127 3 13 chrY 440687 440986 -24272093 - AluSp SINE Alu -17 296 1 8175 204 19 2 chrY 441206 442733 -24270346 - THE1C-int LTR MaLR -98 1553 1 1754 196 132 8 chrY 442733 443111 -24269968 - MSTA LTR MaLR -2 426 2 453 275 92 34 chrY 444549 445139 -24267940 + L1MEc LINE L1 1904 2487 -3728 2660 267 48 13 chrY 445238 446190 -24266889 - L1MB8 LINE L1 -2 6176 5187 3140 181 66 20 chrY 446211 446909 -24266170 - L1MA8 LINE L1 -4 7247 6518 2133 151 109 53 chrY 446923 446991 -24266088 + LOR1a LTR ERV1 1 64 -433 2631 147 95 42 chrY 446991 447570 -24265509 + LTR66 LTR ERVL 1 610 0 2133 151 109 53 chrY 447570 447590 -24265489 + LOR1a LTR ERV1 64 81 -416 2148 118 3 0 chrY 447590 447894 -24265185 - AluSp SINE Alu -8 305 1 2133 151 109 53 chrY 447894 448273 -24264806 + LOR1a LTR ERV1 81 495 -2 858 225 16 5 chrY 448274 448465 -24264614 - L1MA8 LINE L1 -2103 5003 4811 192 77 0 0 chrY 448465 448491 -24264588 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1447 225 0 7 chrY 448493 448777 -24264302 - AluJo SINE Alu -30 282 1 553 162 27 0 chrY 448785 448896 -24264183 - L1MA8 LINE L1 -4977 2053 1940 2433 273 59 15 chrY 448925 449973 -24263106 - L1MB8 LINE L1 -1201 4945 3852 1876 169 14 6 chrY 450037 450381 -24262698 - L1PA15 LINE L1 -3 6813 6467 6910 59 10 2 chrY 450401 451550 -24261529 - L1PA7 LINE L1 -11 6143 4998 13868 230 29 12 chrY 451550 456716 -24256363 - L1PA15 LINE L1 -340 6476 1212 1079 281 59 23 chrY 456730 457393 -24255686 - L1MB8 LINE L1 -2354 3792 3106 1219 206 0 46 chrY 457743 458005 -24255074 + AluJb SINE Alu 1 250 -62 530 259 43 0 chrY 458024 458186 -24254893 + L1MA7 LINE L1 6111 6279 -12 21 0 0 0 chrY 458187 458208 -24254871 + AT_rich Low_complexity Low_complexity 1 21 0 401 308 70 29 chrY 458332 458916 -24254163 + L1MC/D LINE L1 4991 5600 -566 621 235 126 10 chrY 458939 459158 -24253921 - L1MCc LINE L1 -6105 836 68 288 281 79 6 chrY 459265 459429 -24253650 - L1MCc LINE L1 -4458 2483 2308 3229 141 30 20 chrY 459438 459979 -24253100 - MER41A LTR ERV1 -8 546 1 1941 127 27 3 chrY 459979 460279 -24252800 - MER41A-int LTR ERV1 -2 5944 5638 * 10164 139 40 25 chrY 460276 463035 -24250044 - MER41A-int LTR ERV1 -462 4553 2167 681 158 0 0 chrY 463034 463148 -24249931 - MER41A-int LTR ERV1 -3932 2014 1901 * 2453 160 27 13 chrY 463150 463740 -24249339 - MER41A-int LTR ERV1 -4231 3585 648 * 5262 140 47 6 chrY 463723 464547 -24248532 - MER41B-int LTR ERV1 -5087 859 2 1334 127 5 0 chrY 464548 464745 -24248334 - MER41B LTR ERV1 0 635 438 4464 77 106 2 chrY 464789 465412 -24247667 + LTR12 LTR ERV1 1 688 0 21 0 0 0 chrY 465419 465440 -24247639 + AT_rich Low_complexity Low_complexity 1 21 0 1114 218 306 10 chrY 465472 465867 -24247212 + MER101B LTR ERV1 8 519 -51 192 158 0 0 chrY 466009 466047 -24247032 + (CA)n Simple_repeat Simple_repeat 2 39 0 247 170 0 0 chrY 466066 466113 -24246966 - L1MCc LINE L1 -5104 1837 1791 859 293 90 47 chrY 466139 466814 -24246265 - L1MCc LINE L1 -4903 1520 817 336 288 37 122 chrY 467002 467405 -24245674 - L1MCc LINE L1 -5629 793 84 1748 252 103 18 chrY 467532 468723 -24244356 - L1MC4 LINE L1 -130 7912 6472 2260 105 0 3 chrY 469492 469788 -24243291 + AluSx SINE Alu 1 295 -17 1723 280 70 51 chrY 469962 470917 -24242162 + L1MC2 LINE L1 69 986 -5578 2055 140 24 3 chrY 470917 471253 -24241826 + MER61A LTR ERV1 1 343 0 1723 280 70 51 chrY 471253 472064 -24241015 + L1MC2 LINE L1 986 1781 -4783 1197 245 89 61 chrY 472071 472832 -24240247 + L1MC2 LINE L1 4222 4977 -1587 506 290 94 27 chrY 472883 473211 -24239868 - LTR43 LTR ERV1 -66 536 187 1274 248 55 30 chrY 473565 474094 -24238985 + L1MC2 LINE L1 4975 5516 -1048 1978 234 27 12 chrY 474097 474576 -24238503 + L1MC2 LINE L1 6275 6760 -2 838 216 16 0 chrY 474577 474767 -24238312 + L1MC3 LINE L1 5823 6015 -1770 342 235 79 36 chrY 474792 475048 -24238031 - L1ME LINE L1 -391 5773 5403 550 260 65 62 chrY 475182 475264 -24237815 - L1ME LINE L1 -875 5271 5191 186 43 0 0 chrY 475264 475287 -24237792 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 2024 95 26 4 chrY 475289 475562 -24237517 - AluSx SINE Alu -31 281 3 550 260 65 62 chrY 475562 475876 -24237203 - L1ME LINE L1 -955 5191 4871 606 182 31 3 chrY 475932 476086 -24236993 - L1ME LINE L1 -2027 4119 3959 947 143 25 5 chrY 476086 476282 -24236797 + L1MA7 LINE L1 6092 6291 0 210 310 60 20 chrY 476493 476593 -24236486 - MIR SINE MIR -7 255 152 449 299 9 0 chrY 476595 476702 -24236377 + L2 LINE L2 3164 3271 -1 1670 176 71 31 chrY 476748 477072 -24236007 + MER1B DNA MER1_type 1 337 0 255 413 7 7 chrY 477405 477548 -24235531 + MER5B DNA MER1_type 3 145 -33 684 321 69 17 chrY 477580 477926 -24235153 + LTR16A LTR ERVL 46 409 -41 541 291 39 43 chrY 477952 478206 -24234873 + L1MDa LINE L1 17 269 -6271 491 272 0 6 chrY 478430 478610 -24234469 + L1MDa LINE L1 2746 2924 -3616 558 191 21 7 chrY 478615 478756 -24234323 + L1MB8 LINE L1 6017 6159 -19 1534 106 74 0 chrY 478770 479026 -24234053 - L1MA2 LINE L1 0 6304 6030 215 263 162 20 chrY 479129 479228 -24233851 + L2 LINE L2 3189 3301 -12 230 271 24 24 chrY 479490 479575 -24233504 + MLT1L LTR MaLR 1 85 -530 1692 193 21 47 chrY 479646 480071 -24233008 - MLT2D LTR ERVL 0 414 1 21242 224 32 26 chrY 480071 480521 -24232558 - ERVL-D LTR ERVL -7 5757 5311 1023 211 225 0 chrY 480521 480819 -24232260 + MER47A DNA MER2_type 1 365 -1 21242 224 32 26 chrY 480819 483815 -24229264 - ERVL-D LTR ERVL -453 5311 2333 2609 36 10 0 chrY 483815 484123 -24228956 - AluY SINE Alu 0 311 1 21242 224 32 26 chrY 484123 484167 -24228912 - ERVL-D LTR ERVL -3431 2333 2291 1946 116 75 36 chrY 484167 484528 -24228551 + THE1C LTR MaLR 1 375 0 21242 224 32 26 chrY 484528 486656 -24226423 - ERVL-D LTR ERVL -3473 2291 3 288 123 0 92 chrY 486658 486723 -24226356 - ERVL-D LTR ERVL 0 520 462 209 125 0 42 chrY 486734 486782 -24226297 + (TCTA)n Simple_repeat Simple_repeat 1 46 0 437 192 83 67 chrY 486785 486905 -24226174 - MLT2D LTR ERVL -48 366 245 395 259 9 9 chrY 486907 487019 -24226060 + L1M4 LINE L1 4849 4960 -1186 2126 126 3 7 chrY 487025 487334 -24225745 + AluSx SINE Alu 1 308 -4 620 220 163 63 chrY 487342 487674 -24225405 + LTR49-int LTR ERV1 1534 2112 -3834 1154 288 19 6 chrY 487753 488072 -24225007 + LTR49-int LTR ERV1 1908 2230 -4101 447 137 5 257 chrY 488286 488385 -24224694 - MER54A LTR ERVL -491 153 103 1177 65 7 0 chrY 488385 488540 -24224539 - L1MA1 LINE L1 -4 6298 6143 447 137 5 257 chrY 488540 488623 -24224456 - MER54A LTR ERVL -541 103 1 368 232 58 53 chrY 488742 488932 -24224147 + LTR49-int LTR ERV1 1290 1480 -3456 403 266 9 18 chrY 489066 489179 -24223900 + LTR49-int LTR ERV1 3260 3371 -2960 298 288 48 14 chrY 489368 489514 -24223565 + L1PA15-16 LINE L1 3 151 -6712 3618 165 6 40 chrY 489520 490200 -24222879 + L1PB3 LINE L1 5440 6096 -58 1117 126 10 94 chrY 490200 490499 -24222580 + L1PA5 LINE L1 5929 6166 -6 379 155 0 0 chrY 490499 490570 -24222509 + L1PB3 LINE L1 6081 6151 -3 328 145 0 0 chrY 490657 490719 -24222360 + MER39B-int LTR ERV1 2826 2887 -3871 579 243 16 58 chrY 490754 490943 -24222136 + MER39B-int LTR ERV1 6002 6182 -149 941 151 76 12 chrY 491002 491174 -24221905 + MER39B LTR ERV1 3 185 -468 440 217 54 23 chrY 491179 491308 -24221771 - LTR49-int LTR ERV1 -200 6131 5999 261 102 41 20 chrY 491320 491369 -24221710 + MER39B LTR ERV1 191 240 -413 1934 238 124 25 chrY 491456 492107 -24220972 - MER50 LTR ERV1 0 734 19 1902 204 25 10 chrY 492104 492511 -24220568 + MER39 LTR ERV1 295 707 0 * 3087 162 57 18 chrY 492648 493255 -24219824 + LTR29 LTR ERV1 6 653 0 1710 138 11 45 chrY 493891 494238 -24218841 - MER61B LTR ERV1 0 425 1 21 0 0 0 chrY 494295 494316 -24218763 + AT_rich Low_complexity Low_complexity 1 21 0 1824 171 73 14 chrY 494403 494747 -24218332 - THE1B LTR MaLR 0 364 1 11389 97 15 0 chrY 494747 496304 -24216775 - THE1B-int LTR MaLR 0 1580 1 1953 126 66 55 chrY 496304 496686 -24216393 - THE1B LTR MaLR 0 375 1 381 261 85 23 chrY 496754 496884 -24216195 + LTR48 LTR ERV1 1 138 -649 813 206 0 0 chrY 496895 497041 -24216038 - AluJb SINE Alu -18 294 149 2147 136 48 20 chrY 497041 497395 -24215684 - THE1B LTR MaLR 0 364 1 4504 133 17 4 chrY 497402 498095 -24214984 - MER4E LTR ERV1 0 779 78 552 237 17 0 chrY 498095 498213 -24214866 - AluJb SINE Alu -190 122 3 891 261 112 24 chrY 498225 498596 -24214483 + LTR29 LTR ERV1 152 556 -66 2377 220 53 70 chrY 498596 499124 -24213955 + LTR8A LTR ERV1 1 514 -213 2733 213 31 83 chrY 499124 499898 -24213181 - MER50 LTR ERV1 0 734 1 2377 220 53 70 chrY 499898 500109 -24212970 + LTR8A LTR ERV1 514 727 0 341 208 13 13 chrY 500109 500185 -24212894 + LTR49 LTR ERV1 520 595 0 1082 205 82 88 chrY 500186 500594 -24212485 - LTR48 LTR ERV1 -69 718 205 2308 71 0 0 chrY 500594 500877 -24212202 - AluY SINE Alu -2 309 27 1082 205 82 88 chrY 500877 501077 -24212002 - LTR48 LTR ERV1 -582 205 5 323 169 0 26 chrY 501314 501391 -24211688 + (TATG)n Simple_repeat Simple_repeat 2 76 0 191 244 217 78 chrY 501717 501832 -24211247 + MER5A DNA MER1_type 37 167 -22 1133 223 18 0 chrY 502311 502535 -24210544 - MER101B LTR ERV1 -341 229 2 30 69 0 0 chrY 502695 502753 -24210326 + AT_rich Low_complexity Low_complexity 1 58 0 1389 179 33 3 chrY 503558 503860 -24209219 - L1MA6 LINE L1 0 6300 5990 349 277 54 92 chrY 503932 504116 -24208963 + MER5B DNA MER1_type 2 178 0 26 30 0 0 chrY 504127 504160 -24208919 + AT_rich Low_complexity Low_complexity 1 33 0 22 94 0 0 chrY 504491 504555 -24208524 + AT_rich Low_complexity Low_complexity 1 64 0 2225 169 3 0 chrY 504627 505011 -24208068 - L1PB3 LINE L1 -3 6151 5767 5232 239 31 22 chrY 505011 507693 -24205386 - L1PBa LINE L1 -4208 2655 877 2195 114 74 0 chrY 507693 508044 -24205035 + MER51B LTR ERV1 1 377 0 5232 239 31 22 chrY 508044 508925 -24204154 - L1PBa LINE L1 -5986 877 5 503 224 10 0 chrY 509133 509231 -24203848 + FLAM_A SINE Alu 10 108 -34 234 363 0 22 chrY 510260 510351 -24202728 - L1MEd LINE L1 -5595 524 436 2013 151 0 3 chrY 510379 510677 -24202402 - AluJb SINE Alu -15 297 1 353 248 8 101 chrY 510764 510893 -24202186 - LTR4-int LTR ERV1 -2130 2061 1945 38693 133 19 13 chrY 510908 516853 -24196226 - LTR4-int LTR ERV1 -696 7730 1754 765 120 0 0 chrY 516853 516961 -24196118 - LTR4-int LTR ERV1 -6565 1861 1754 * 11333 128 32 39 chrY 516936 518844 -24194235 - LTR4-int LTR ERV1 -6531 1895 2 972 160 151 21 chrY 518844 519082 -24193997 - LTR4 LTR ERV1 0 596 328 228 238 12 71 chrY 519179 519263 -24193816 - LTR4 LTR ERV1 -239 357 279 2645 150 15 2 chrY 519364 519818 -24193261 + L1PA15 LINE L1 5705 6164 -1 241 391 23 0 chrY 519981 520068 -24193011 + MER91A DNA MER1_type 2 90 -106 238 200 43 0 chrY 520307 520377 -24192702 + (TA)n Simple_repeat Simple_repeat 2 74 0 309 319 62 12 chrY 521209 521369 -24191710 + L1M4 LINE L1 3605 3772 -2374 1712 218 128 26 chrY 521370 521954 -24191125 + LTR48B LTR ERV1 1 644 0 1981 132 13 26 chrY 522266 522576 -24190503 - AluSx SINE Alu -4 308 3 2021 147 0 0 chrY 522739 523032 -24190047 - AluSg SINE Alu -17 293 1 1193 285 49 35 chrY 523133 523196 -24189883 - L1ME2 LINE L1 -180 5984 5923 2178 109 0 3 chrY 523196 523499 -24189580 + AluY SINE Alu 3 304 -7 1193 285 49 35 chrY 523499 524031 -24189048 - L1ME2 LINE L1 -241 5923 5381 334 268 43 85 chrY 524035 524270 -24188809 - L1ME2 LINE L1 -1080 5066 4842 3049 154 4 53 chrY 524297 524940 -24188139 + MER4B LTR ERV1 1 779 0 229 306 67 67 chrY 525132 525387 -24187692 + L1ME LINE L1 458 712 -5493 21 0 0 0 chrY 525387 525408 -24187671 + AT_rich Low_complexity Low_complexity 1 21 0 1158 173 0 48 chrY 525516 525747 -24187332 + AluJo SINE Alu 86 305 -7 348 261 0 0 chrY 525758 525850 -24187229 + L1ME LINE L1 832 923 -5282 2302 261 65 16 chrY 525891 527108 -24185971 + L1ME LINE L1 2061 3301 -2914 21 36 0 0 chrY 527237 527265 -24185814 + AT_rich Low_complexity Low_complexity 1 28 0 27 0 0 0 chrY 528520 528547 -24184532 + AT_rich Low_complexity Low_complexity 1 27 0 934 111 0 0 chrY 528987 529122 -24183957 - AluSg/x SINE Alu -2 310 176 1709 122 4 4 chrY 529122 529368 -24183711 - AluSx SINE Alu -66 246 1 2564 122 41 14 chrY 529559 529976 -24183103 - MSTA LTR MaLR 0 428 1 22 0 0 0 chrY 530156 530178 -24182901 + AT_rich Low_complexity Low_complexity 1 22 0 1972 140 69 14 chrY 530986 531336 -24181743 - THE1C LTR MaLR -6 369 1 9750 114 37 36 chrY 531337 532915 -24180164 - THE1C-int LTR MaLR -1 1579 1 1948 140 83 14 chrY 532915 533266 -24179813 - THE1C LTR MaLR 0 375 1 835 379 27 15 chrY 533335 533741 -24179338 - L2 LINE L2 -2896 418 8 2087 164 65 12 chrY 534063 534466 -24178613 + MSTB LTR MaLR 3 426 0 7615 192 32 53 chrY 534473 534652 -24178427 + MSTB-int LTR MaLR 8 189 -1462 1320 156 141 15 chrY 534652 534921 -24178158 + AluSq SINE Alu 1 303 0 7615 192 32 53 chrY 534921 536096 -24176983 + MSTB-int LTR MaLR 189 1323 -328 2348 93 0 0 chrY 536096 536396 -24176683 + AluSg SINE Alu 1 300 -10 7615 192 32 53 chrY 536396 536713 -24176366 + MSTB-int LTR MaLR 1323 1645 -6 1637 198 119 22 chrY 536719 537088 -24175991 + MSTB LTR MaLR 1 405 -21 2684 105 6 0 chrY 538448 538810 -24174269 + THE1B LTR MaLR 1 364 0 441 0 0 0 chrY 538902 538951 -24174128 + (TAGA)n Simple_repeat Simple_repeat 2 50 0 717 12 0 0 chrY 539208 539290 -24173789 + (TTCTC)n Simple_repeat Simple_repeat 3 84 0 1250 144 0 20 chrY 539290 539485 -24173594 - AluSg/x SINE Alu -31 281 91 584 194 194 51 chrY 539486 539682 -24173397 - MER95 LTR ERV -199 232 9 341 279 99 71 chrY 539684 540078 -24173001 - L1M4 LINE L1 -1120 5026 4622 44 20 0 0 chrY 540488 540539 -24172540 + AT_rich Low_complexity Low_complexity 1 51 0 4408 189 33 6 chrY 540540 541551 -24171528 + L1 LINE L1 4335 5372 -774 3850 197 25 93 chrY 541551 542742 -24170337 + MER39B-int LTR ERV1 5074 6183 -148 3149 175 14 36 chrY 542811 543450 -24169629 + MER39B LTR ERV1 29 653 0 2650 219 96 14 chrY 543450 544250 -24168829 - L1MB7 LINE L1 -63 6121 5256 402 244 13 97 chrY 544256 544494 -24168585 - L1MB7 LINE L1 -1459 4687 4470 959 145 30 30 chrY 544592 544792 -24168287 - L1MA7 LINE L1 -3 6288 6089 187 91 23 23 chrY 545136 545180 -24167899 + (GAAAA)n Simple_repeat Simple_repeat 2 45 0 925 254 52 0 chrY 545439 545730 -24167349 + L1M4 LINE L1 2639 2944 -3202 * 2772 124 26 0 chrY 545720 546252 -24166827 - L1PA14 LINE L1 -481 5680 5139 3258 102 10 10 chrY 546252 546735 -24166344 + L1PA14 LINE L1 5671 6159 -2 4686 250 16 63 chrY 546736 546834 -24166245 + L1M4 LINE L1 2928 3029 -3117 814 211 8 86 chrY 546834 547090 -24165989 - MER46A DNA MER2_type 0 236 1 4686 250 16 63 chrY 547090 547551 -24165528 + L1M4 LINE L1 3029 3510 -2636 1917 133 74 17 chrY 547551 547903 -24165176 - THE1C LTR MaLR 0 375 4 4686 250 16 63 chrY 547903 549178 -24163901 + L1M4 LINE L1 3510 4677 -1469 23 54 0 0 chrY 550158 550195 -24162884 + AT_rich Low_complexity Low_complexity 1 37 0 9526 69 1 0 chrY 550198 551447 -24161632 - L1P LINE L1 -3679 2467 1218 7151 54 1 0 chrY 551447 553036 -24160043 + L1PA5 LINE L1 4566 6154 0 604 259 92 6 chrY 553741 553915 -24159164 + MIR SINE MIR 72 260 -2 27 29 0 0 chrY 554092 554126 -24158953 + AT_rich Low_complexity Low_complexity 1 34 0 387 0 0 0 chrY 554423 554466 -24158613 + (TG)n Simple_repeat Simple_repeat 1 43 0 225 230 90 70 chrY 554618 554718 -24158361 + MLT1I LTR MaLR 308 409 0 199 188 0 50 chrY 556059 556139 -24156940 + GA-rich Low_complexity Low_complexity 2 77 0 1198 74 0 0 chrY 556168 556317 -24156762 - AluY SINE Alu -9 302 154 28 71 0 0 chrY 557052 557108 -24155971 + AT_rich Low_complexity Low_complexity 1 56 0 481 308 85 28 chrY 557952 558199 -24154880 - MIR SINE MIR -1 261 1 12161 179 43 18 chrY 558280 559981 -24153098 - L1PB1 LINE L1 0 6867 5211 536 0 0 15 chrY 559981 560046 -24153033 + (TTTTA)n Simple_repeat Simple_repeat 4 67 0 12161 179 43 18 chrY 560046 561830 -24151249 - L1PB1 LINE L1 -1656 5211 3474 1650 113 4 4 chrY 561830 562061 -24151018 - AluSx SINE Alu -81 231 1 12161 179 43 18 chrY 562061 565107 -24147972 - L1PB1 LINE L1 -3393 3474 1 1699 181 0 7 chrY 566435 566722 -24146357 + AluJb SINE Alu 1 285 -27 23 0 0 0 chrY 566722 566745 -24146334 + AT_rich Low_complexity Low_complexity 1 23 0 2750 281 81 48 chrY 567655 569239 -24143840 + HAL1 LINE L1 1 1637 -870 22 0 0 0 chrY 572879 572901 -24140178 + AT_rich Low_complexity Low_complexity 1 22 0 6991 175 75 37 chrY 572908 574299 -24138780 + L1PA16 LINE L1 16 1458 -6107 6708 47 1 6 chrY 574300 575133 -24137946 - L1PA5 LINE L1 0 6154 5326 4556 60 0 5 chrY 575129 575732 -24137347 + L1PA5 LINE L1 4718 5317 -829 * 6587 150 25 8 chrY 575728 578134 -24134945 + L1PA16 LINE L1 1444 3927 -3638 1972 156 72 29 chrY 578138 578672 -24134407 + MLT2A2 LTR ERVL 1 554 0 5600 187 19 141 chrY 578675 580196 -24132883 + L1PA16 LINE L1 3930 5149 -2416 228 86 0 0 chrY 580196 580231 -24132848 + (TAAAA)n Simple_repeat Simple_repeat 1 35 0 5600 187 19 141 chrY 580231 580710 -24132369 + L1PA16 LINE L1 5149 5685 -1880 928 152 0 0 chrY 580707 580865 -24132214 + L1 LINE L1 3650 3807 -2339 * 4902 178 38 46 chrY 580891 582114 -24130965 + L1PA16 LINE L1 5704 6893 -692 2333 74 3 6 chrY 582114 582425 -24130654 - AluY SINE Alu -1 310 1 4902 178 38 46 chrY 582425 583105 -24129974 + L1PA16 LINE L1 6893 7577 -8 982 237 60 82 chrY 583118 583813 -24129266 + L1M4 LINE L1 2977 3656 -3909 * 2005 169 52 54 chrY 583810 584151 -24128928 + L1MA7 LINE L1 5765 6106 -185 1709 154 82 113 chrY 584151 584592 -24128487 + MSTA LTR MaLR 2 428 0 2005 169 52 54 chrY 584592 584766 -24128313 + L1MA7 LINE L1 6106 6279 -12 783 295 61 40 chrY 584807 585098 -24127981 + HAL1 LINE L1 2020 2326 -181 1866 197 45 33 chrY 585098 585519 -24127560 + MSTB LTR MaLR 1 426 0 783 295 61 40 chrY 585519 585705 -24127374 + HAL1 LINE L1 2326 2507 0 2277 159 16 60 chrY 586772 587219 -24125860 + MSTB1 LTR MaLR 1 427 -5 22 35 0 0 chrY 587923 587952 -24125127 + AT_rich Low_complexity Low_complexity 1 29 0 237 316 20 20 chrY 588321 588419 -24124660 + MER5B DNA MER1_type 1 98 -80 8452 216 81 30 chrY 588977 589326 -24123753 - L1MC2 LINE L1 -11 7747 7417 2315 85 0 10 chrY 589326 589631 -24123448 + AluSc SINE Alu 1 302 -7 8452 216 81 30 chrY 589631 591543 -24121536 - L1MC2 LINE L1 -341 7417 5403 5200 208 52 14 chrY 591646 593479 -24119600 - L1MC1 LINE L1 0 6613 4711 2516 119 6 3 chrY 593479 593840 -24119239 + THE1B LTR MaLR 1 362 -2 5200 208 52 14 chrY 593840 593953 -24119126 - L1MC1 LINE L1 -1902 4711 4604 644 302 37 0 chrY 594022 594211 -24118868 - MLT2B1 LTR ERVL -322 198 3 2232 112 0 0 chrY 594212 594507 -24118572 + AluSg SINE Alu 1 295 -15 2714 96 5 8 chrY 594523 594899 -24118180 + THE1C LTR MaLR 1 375 0 351 293 50 0 chrY 594900 595040 -24118039 + L1M4 LINE L1 4840 4986 -2579 1036 255 7 29 chrY 595053 595331 -24117748 + AluJo SINE Alu 11 282 -30 2528 238 33 6 chrY 595359 596019 -24117060 + L1M4 LINE L1 4980 5657 -1908 264 191 16 32 chrY 596081 596144 -24116935 + MLT2B1 LTR ERVL 298 359 -161 3207 216 76 26 chrY 596152 598157 -24114922 - L1MC1 LINE L1 -2751 3675 1479 871 150 50 0 chrY 598172 598332 -24114747 - L1MA3 LINE L1 -8 6297 6130 11397 183 30 9 chrY 598373 601792 -24111287 - L1MA3 LINE L1 -102 7265 3772 7904 210 24 125 chrY 601788 604331 -24108748 - L1MA3 LINE L1 -4564 2645 1 * 1676 250 71 63 chrY 605575 606479 -24106600 - L1M4 LINE L1 -1171 4975 4065 1246 281 79 41 chrY 606698 606868 -24106211 - L1M4c LINE L1 -4539 2418 2256 186 103 0 0 chrY 606868 606897 -24106182 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1246 281 79 41 chrY 606897 607683 -24105396 - L1M4c LINE L1 -4701 2256 1356 286 232 61 0 chrY 607694 607776 -24105303 + L1M4b LINE L1 1330 1416 -5443 290 302 0 0 chrY 607795 607891 -24105188 - L1M4c LINE L1 -5555 1304 1209 285 146 0 0 chrY 608014 608062 -24105017 + (TG)n Simple_repeat Simple_repeat 1 48 0 896 333 38 10 chrY 608419 608812 -24104267 - L1M4c LINE L1 -5922 937 534 655 133 0 0 chrY 609083 609188 -24103891 - L1PA8A LINE L1 -29 6102 5998 23 0 0 0 chrY 609600 609623 -24103456 + AT_rich Low_complexity Low_complexity 1 23 0 2002 132 3 3 chrY 610600 610888 -24102191 - AluSx SINE Alu -22 290 3 30656 110 13 63 chrY 610983 617495 -24095584 + L1PA7 LINE L1 1 6468 -1 230 286 0 65 chrY 618187 618264 -24094815 + MER5B DNA MER1_type 4 75 -103 233 0 0 59 chrY 618407 618441 -24094638 + (TTTTTG)n Simple_repeat Simple_repeat 1 32 0 247 366 0 20 chrY 618531 618632 -24094447 + MLT1K LTR MaLR 166 264 -324 392 339 0 0 chrY 618771 618898 -24094181 + MLT1K LTR MaLR 354 480 -108 333 234 102 55 chrY 620418 620674 -24092405 - L1MC5 LINE L1 -158 7803 7536 1524 246 20 9 chrY 621301 621646 -24091433 + MLT1A1 LTR MaLR 14 362 -3 374 343 116 5 chrY 622883 623081 -24089998 - MIR SINE MIR -6 256 37 23 0 0 0 chrY 624090 624113 -24088966 + AT_rich Low_complexity Low_complexity 1 23 0 281 259 0 24 chrY 624281 624366 -24088713 + L2 LINE L2 2152 2234 -1080 199 365 47 0 chrY 624608 624693 -24088386 + L2 LINE L2 2723 2811 -503 24 32 0 0 chrY 624921 624952 -24088127 + AT_rich Low_complexity Low_complexity 1 31 0 280 277 32 43 chrY 624964 625058 -24088021 - MLT1H1 LTR MaLR -82 473 381 10770 219 51 41 chrY 625150 626300 -24086779 - L1PA16 LINE L1 -1 7603 6466 1479 188 61 4 chrY 626300 626577 -24086502 + AluJb SINE Alu 2 294 -18 10770 219 51 41 chrY 626577 627670 -24085409 - L1PA16 LINE L1 -1138 6466 5385 1247 77 0 0 chrY 627670 627826 -24085253 + AluSg SINE Alu 1 156 -154 10770 219 51 41 chrY 627826 630771 -24082308 - L1PA16 LINE L1 -2219 5385 2199 348 283 0 10 chrY 631023 631122 -24081957 - L1PA16 LINE L1 -5399 2182 2085 873 345 36 46 chrY 631237 631845 -24081234 - L1PA16 LINE L1 -6185 1389 788 13729 155 26 11 chrY 631857 632057 -24081022 - Tigger1 DNA MER2_type 0 2418 2223 1600 189 14 7 chrY 632057 632343 -24080736 + AluJo SINE Alu 1 288 -24 219 36 0 0 chrY 632347 632375 -24080704 + (CAA)n Simple_repeat Simple_repeat 2 29 0 13729 155 26 11 chrY 632375 634544 -24078535 - Tigger1 DNA MER2_type -197 2221 8 211 279 36 117 chrY 635017 635128 -24077951 - MIR SINE MIR -98 164 63 222 118 0 0 chrY 636475 636509 -24076570 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 1801 171 10 7 chrY 636620 636930 -24076149 + AluJb SINE Alu 1 311 -1 459 309 23 11 chrY 637042 637217 -24075862 + CT-rich Low_complexity Low_complexity 3 179 0 279 0 0 0 chrY 637286 637317 -24075762 + (TG)n Simple_repeat Simple_repeat 2 32 0 391 108 0 0 chrY 637503 637568 -24075511 + L1PA13 LINE L1 6096 6160 -3 543 250 119 6 chrY 637789 637949 -24075130 - MIR SINE MIR -49 213 36 21 0 0 0 chrY 638679 638700 -24074379 + AT_rich Low_complexity Low_complexity 1 21 0 237 339 18 46 chrY 638709 638818 -24074261 - MER5A DNA MER1_type -72 117 12 748 277 68 4 chrY 639090 639325 -24073754 + MIR SINE MIR 12 261 -1 216 111 0 0 chrY 639339 639375 -24073704 + (CAT)n Simple_repeat Simple_repeat 1 36 0 36 70 0 0 chrY 639508 639579 -24073500 + AT_rich Low_complexity Low_complexity 1 71 0 2309 68 0 10 chrY 639721 640017 -24073062 + AluY SINE Alu 2 294 -17 696 324 44 35 chrY 640119 640662 -24072417 - L1ME3 LINE L1 -280 5882 5335 1454 180 3 42 chrY 640829 641118 -24071961 - AluJo SINE Alu -21 291 14 3234 147 7 47 chrY 641550 642143 -24070936 + LTR24B LTR ERV1 1 569 -7 1246 237 76 57 chrY 642143 642737 -24070342 + LTR24B-int LTR ERV1 1 745 -4378 350 213 13 13 chrY 643481 643556 -24069523 + LTR24B-int LTR ERV1 1121 1195 -5136 312 274 14 0 chrY 643567 643640 -24069439 + tRNA-Glu-GAG tRNA tRNA 2 75 0 406 216 0 20 chrY 643640 643742 -24069337 + LTR24B-int LTR ERV1 1283 1382 -4949 848 191 39 22 chrY 643866 644044 -24069035 + LTR24B-int LTR ERV1 1372 1552 -4779 360 227 34 59 chrY 644152 644271 -24068808 + LTR24B-int LTR ERV1 873 988 -4135 369 250 0 0 chrY 644271 644347 -24068732 + MER34C LTR ERV1 155 230 -355 4432 192 77 80 chrY 644363 645303 -24067776 + LTR24B-int LTR ERV1 1093 2034 -4208 1365 237 0 33 chrY 645303 645607 -24067472 + AluJo SINE Alu 1 294 -8 4432 192 77 80 chrY 645607 647119 -24065960 + LTR24B-int LTR ERV1 2034 4848 -1394 2516 197 40 19 chrY 647119 648094 -24064985 + LTR24B-int LTR ERV1 4425 4999 -124 2282 97 3 0 chrY 648106 648406 -24064673 - AluSp SINE Alu -11 302 2 5930 109 32 12 chrY 648411 650072 -24063007 - L1PA13 LINE L1 0 6163 4489 511 182 16 8 chrY 650073 650194 -24062885 + L1PA13 LINE L1 4362 4483 -1663 2667 164 51 9 chrY 650284 650833 -24062246 + LTR24B LTR ERV1 1 572 -4 259 259 79 65 chrY 651382 651672 -24061407 + HAL1 LINE L1 947 1240 -1267 297 109 0 22 chrY 651693 651739 -24061340 + MER11B LTR ERVK 1191 1235 -1 2931 80 18 0 chrY 651739 652140 -24060939 + L1PA8 LINE L1 5762 6169 -3 588 112 5 4 chrY 652150 652268 -24060811 - L1MC/D LINE L1 -406 5760 5664 1886 137 7 17 chrY 652381 652681 -24060398 + AluSx SINE Alu 3 299 -13 442 342 46 29 chrY 652717 652957 -24060122 + L2 LINE L2 1717 1960 -1354 737 160 0 40 chrY 654117 654274 -24058805 - AluJb SINE Alu 0 316 165 2523 199 19 29 chrY 654460 655082 -24057997 - L1MC1 LINE L1 0 6613 5998 727 155 69 6 chrY 655100 655274 -24057805 - L1MA9 LINE L1 0 6312 6128 5365 192 31 2 chrY 655274 656404 -24056675 - L1 LINE L1 -1793 5313 4151 2111 256 72 33 chrY 656407 657134 -24055945 - L1 LINE L1 -6274 756 2 6171 230 27 84 chrY 657153 657217 -24055862 - L1MC1 LINE L1 -603 6010 5944 315 0 0 0 chrY 657217 657252 -24055827 + (TG)n Simple_repeat Simple_repeat 2 36 0 6171 230 27 84 chrY 657252 658617 -24054462 - L1MC1 LINE L1 -669 5944 4502 1622 190 80 86 chrY 658617 659207 -24053872 + LTR60 LTR ERV1 1 586 0 6171 230 27 84 chrY 659207 660913 -24052166 - L1MC1 LINE L1 -2111 4502 2699 2358 93 0 10 chrY 660913 661226 -24051853 - AluSg SINE Alu 0 310 1 6171 230 27 84 chrY 661226 661321 -24051758 - L1MC1 LINE L1 -3914 2699 2992 1638 174 31 10 chrY 661321 661609 -24051470 + AluJb SINE Alu 18 311 -1 6171 230 27 84 chrY 661609 661853 -24051226 - L1MC1 LINE L1 -3620 2993 2737 4976 224 36 30 chrY 661859 663124 -24049955 - L1MC1 LINE L1 -5108 1318 46 2025 107 3 7 chrY 663889 664187 -24048892 - AluSx SINE Alu -15 297 1 21 0 0 0 chrY 664808 664829 -24048250 + AT_rich Low_complexity Low_complexity 1 21 0 662 287 101 13 chrY 665039 665276 -24047803 - MIR SINE MIR 0 262 5 22 0 0 0 chrY 665923 665945 -24047134 + AT_rich Low_complexity Low_complexity 1 22 0 328 89 0 0 chrY 666357 666402 -24046677 - Alu SINE Alu -257 45 1 2106 70 0 22 chrY 666535 666808 -24046271 + AluY SINE Alu 37 303 -8 254 310 0 10 chrY 666809 666909 -24046170 - L1MCb LINE L1 -1973 4453 4355 25 0 0 0 chrY 666994 667019 -24046060 + AT_rich Low_complexity Low_complexity 1 25 0 616 292 88 86 chrY 667124 667435 -24045644 - L1M4 LINE L1 -2370 3776 3467 1369 218 14 0 chrY 667435 667715 -24045364 - AluJb SINE Alu -28 284 1 616 292 88 86 chrY 667715 668400 -24044679 - L1M4 LINE L1 -2679 3467 2778 418 330 52 73 chrY 668446 668831 -24044248 - L1MEd LINE L1 -5643 476 100 250 232 91 40 chrY 669509 669608 -24043471 - MLT1I LTR MaLR -2 407 304 2481 211 39 7 chrY 670182 670752 -24042327 + L1MB3 LINE L1 5586 6173 -10 10289 188 34 4 chrY 670796 672480 -24040599 - L1PB1 LINE L1 -1 6866 5233 234 0 0 0 chrY 672480 672506 -24040573 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 10289 188 34 4 chrY 672506 674100 -24038979 - L1PB1 LINE L1 -1634 5233 3500 251 229 41 8 chrY 674111 674233 -24038846 + (TA)n Simple_repeat Simple_repeat 2 127 0 6038 116 39 6 chrY 674233 675222 -24037857 - L1PB1 LINE L1 -4458 2405 1384 461 177 50 116 chrY 675222 675403 -24037676 - MER4B-int LTR ERV1 -3751 2195 2027 198 103 0 0 chrY 675446 675475 -24037604 + (CA)n Simple_repeat Simple_repeat 2 30 0 3285 194 12 5 chrY 675508 676285 -24036794 - MER4B-int LTR ERV1 -5698 1060 225 1660 135 51 11 chrY 676308 676385 -24036694 - MER4B-int LTR ERV1 -6473 285 213 182 31 0 62 chrY 676385 676417 -24036662 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 1660 135 51 11 chrY 676417 676613 -24036466 - MER4B-int LTR ERV1 -6545 213 1 3258 152 6 11 chrY 676613 677227 -24035852 - MER4B LTR ERV1 0 779 3 838 250 44 0 chrY 677229 677457 -24035622 - L1MCb LINE L1 -2311 4115 3878 * 1431 209 55 13 chrY 677455 678158 -24034921 - L1MCb LINE L1 -3953 2473 1702 1758 150 3 46 chrY 678162 678523 -24034556 - MER4A LTR ERV1 0 664 261 236 111 22 22 chrY 678523 678568 -24034511 - MER4A LTR ERV1 -566 98 54 2026 220 49 52 chrY 678599 678675 -24034404 - L1MCb LINE L1 -4821 1605 1530 2510 69 0 0 chrY 678675 678980 -24034099 - AluY SINE Alu -6 305 1 2026 220 49 52 chrY 678980 679924 -24033155 - L1MCb LINE L1 -4896 1530 609 408 225 40 2 chrY 679962 680075 -24033004 - LTR9B LTR ERV1 0 644 557 255 283 0 0 chrY 680199 680259 -24032820 + LTR4 LTR ERV1 298 357 -239 1225 170 7 92 chrY 680345 680651 -24032428 + LTR4 LTR ERV1 317 596 0 2072 242 59 8 chrY 680651 681176 -24031903 - LTR9B LTR ERV1 -86 558 7 1437 167 7 11 chrY 681182 681447 -24031632 - HUERS-P3 LTR ERV1 0 8919 6828 811 154 18 6 chrY 681772 681941 -24031138 - HUERS-P3 LTR ERV1 -2453 2562 2392 515 200 16 24 chrY 681942 682067 -24031012 - HUERS-P3 LTR ERV1 -1934 6985 6862 3441 204 13 5 chrY 682078 682712 -24030367 - HUERS-P3 LTR ERV1 -2007 6912 6274 1418 173 68 0 chrY 682704 682953 -24030126 - HUERS-P3 LTR ERV1 -3753 5166 4901 * 736 167 91 0 chrY 682954 683086 -24029993 - HUERS-P3 LTR ERV1 -4237 4682 4539 * 9203 163 14 2 chrY 683079 684555 -24028524 - HUERS-P3 LTR ERV1 -5635 3284 1791 4948 173 30 12 chrY 684552 685437 -24027642 - HUERS-P3 LTR ERV1 -7267 1652 752 * 2825 205 34 19 chrY 685482 686107 -24026972 - HUERS-P3 LTR ERV1 -8285 634 1 2740 208 59 8 chrY 686107 686714 -24026365 - LTR9B LTR ERV1 0 644 7 2657 222 11 81 chrY 686716 687184 -24025895 - L1MCa LINE L1 -5342 754 389 2039 61 0 0 chrY 687184 687488 -24025591 + AluY SINE Alu 34 337 0 2657 222 11 81 chrY 687488 687826 -24025253 - L1MCa LINE L1 -5707 389 29 23 0 0 0 chrY 687830 687853 -24025226 + AT_rich Low_complexity Low_complexity 1 23 0 314 204 97 11 chrY 687956 688049 -24025030 - L1MD1 LINE L1 -39 6203 6103 530 275 26 0 chrY 688067 688260 -24024819 - L1MDa LINE L1 -2934 3472 3275 476 301 25 0 chrY 688259 688422 -24024657 - L1MDa LINE L1 -4168 2238 2072 * 1555 260 57 67 chrY 688435 689223 -24023856 - L1MDa LINE L1 -4390 2016 1237 259 29 0 0 chrY 689256 689291 -24023788 - L1MA7 LINE L1 -21 6270 6236 1172 156 23 8 chrY 689294 689594 -24023485 + L1M2 LINE L1 5180 5482 -743 2281 257 67 123 chrY 689652 690825 -24022254 - L1MDa LINE L1 -5274 1135 28 3085 199 79 47 chrY 690830 691319 -24021760 - L1MC3 LINE L1 -16 7769 7238 3244 175 30 57 chrY 691319 692126 -24020953 + LTR1 LTR ERV1 1 785 0 3085 199 79 47 chrY 692126 692513 -24020566 - L1MC3 LINE L1 -547 7238 6865 3256 262 58 7 chrY 692531 692909 -24020170 - L1M4 LINE L1 -1164 4982 4625 1889 141 133 16 chrY 692909 693292 -24019787 + MSTA LTR MaLR 1 428 0 3256 262 58 7 chrY 693292 694011 -24019068 - L1M4 LINE L1 -1521 4625 3829 1494 211 5 83 chrY 694057 694478 -24018601 + MLT1B LTR MaLR 1 388 -2 545 224 86 82 chrY 694479 694783 -24018296 - L1MCa LINE L1 -5026 1400 1096 1181 217 102 110 chrY 695079 695489 -24017590 + MSTD-int LTR MaLR 1237 1643 -92 2547 273 57 62 chrY 695490 697305 -24015774 + L1MB7 LINE L1 2564 4368 -1778 2303 225 73 2 chrY 697320 698133 -24014946 + L1MB7 LINE L1 4951 5827 -357 32 75 0 0 chrY 698484 698551 -24014528 + AT_rich Low_complexity Low_complexity 1 67 0 27 73 0 0 chrY 698632 698687 -24014392 + AT_rich Low_complexity Low_complexity 1 55 0 184 280 96 88 chrY 699136 699261 -24013818 - MIR SINE MIR -19 243 118 2171 209 35 7 chrY 699273 699704 -24013375 + Tigger5 DNA MER2_type 10 452 -1871 395 190 25 0 chrY 699715 699794 -24013285 + Tigger5 DNA MER2_type 2243 2323 0 22 35 0 0 chrY 699894 699923 -24013156 + AT_rich Low_complexity Low_complexity 1 29 0 881 227 100 0 chrY 700394 700685 -24012394 + MER33 DNA MER1_type 1 320 -4 7086 235 13 10 chrY 701651 703166 -24009913 + ERVL LTR ERVL 417 1936 -3828 799 224 87 42 chrY 703168 703498 -24009581 + MSTD LTR MaLR 1 394 -2 629 73 0 109 chrY 703538 703648 -24009431 + L1MA3 LINE L1 6198 6295 -10 360 336 0 0 chrY 703662 703784 -24009295 + MSTD-int LTR MaLR 44 165 -1570 1943 137 77 14 chrY 703784 704135 -24008944 - THE1C LTR MaLR 0 375 3 399 133 0 13 chrY 704137 704212 -24008867 - THE1C-int LTR MaLR 0 1580 1507 1360 262 100 17 chrY 704219 704639 -24008440 + MLT2B1 LTR ERVL 1 455 -65 225 0 0 0 chrY 704639 704664 -24008415 + (TC)n Simple_repeat Simple_repeat 1 25 0 13908 181 22 9 chrY 704668 708751 -24004328 + L1MA1 LINE L1 2158 6296 -6 486 267 121 45 chrY 708741 709009 -24004070 + L1MC4 LINE L1 6351 6650 -1392 * 279 0 0 0 chrY 709009 709040 -24004039 + (CA)n Simple_repeat Simple_repeat 2 32 0 486 267 121 45 chrY 709040 709101 -24003978 + L1MC4 LINE L1 6650 6705 -1337 258 32 0 0 chrY 709264 709295 -24003784 + (TCTCC)n Simple_repeat Simple_repeat 5 35 0 472 287 37 0 chrY 709316 709452 -24003627 - MLT1E2 LTR MaLR -320 306 166 461 159 0 0 chrY 709463 709532 -24003547 + AluSg/x SINE Alu 218 286 -23 228 297 34 46 chrY 709568 709743 -24003336 + L1ME LINE L1 5618 5790 -331 1113 300 47 16 chrY 709754 710248 -24002831 - L1MCb LINE L1 -5104 941 433 1036 278 35 56 chrY 710236 710655 -24002424 - L1M4 LINE L1 -1931 4215 3789 * 2226 82 0 0 chrY 710655 710983 -24002096 - AluY SINE Alu 0 328 1 1036 278 35 56 chrY 710983 711122 -24001957 - L1M4 LINE L1 -2357 3789 3668 245 29 29 0 chrY 711122 711156 -24001923 + (TCTA)n Simple_repeat Simple_repeat 2 36 0 1036 278 35 56 chrY 711156 711217 -24001862 - L1M4 LINE L1 -2478 3668 3607 2651 159 2 47 chrY 711219 711727 -24001352 - L1PA15 LINE L1 0 6165 5681 21 0 0 0 chrY 711731 711752 -24001327 + AT_rich Low_complexity Low_complexity 1 21 0 446 238 66 13 chrY 711981 712132 -24000947 - L1M4 LINE L1 -2915 3231 3073 2788 175 45 15 chrY 712148 712684 -24000395 + MER7C DNA MER2_type 2 553 -49 * 2813 190 87 0 chrY 712681 713213 -23999866 - Tigger4(Zombi) DNA MER2_type -2153 578 1 3434 193 52 75 chrY 713216 713951 -23999128 + L1MA6 LINE L1 5042 5774 -526 253 122 20 0 chrY 713951 714000 -23999079 + LTR66 LTR ERVL 389 438 -172 3434 193 52 75 chrY 714000 714515 -23998564 + L1MA6 LINE L1 5774 6299 -1 1941 149 44 16 chrY 715423 715786 -23997293 - THE1C LTR MaLR 0 375 3 9686 136 11 37 chrY 715792 717402 -23995677 - THE1C-int LTR MaLR -4 1576 8 1707 150 62 38 chrY 717402 717741 -23995338 - THE1C LTR MaLR -28 347 1 42448 32 24 2 chrY 719342 725357 -23987722 + L1HS LINE L1 2 6155 0 198 91 0 0 chrY 725359 725392 -23987687 + (A)n Simple_repeat Simple_repeat 1 33 0 246 32 0 0 chrY 726253 726284 -23986795 + (TAAAA)n Simple_repeat Simple_repeat 3 33 0 31 76 0 0 chrY 726389 726455 -23986624 + AT_rich Low_complexity Low_complexity 1 66 0 496 286 181 21 chrY 726590 726877 -23986202 + LTR16C LTR ERVL 157 489 -2 22 70 0 0 chrY 727354 727397 -23985682 + AT_rich Low_complexity Low_complexity 1 43 0 1501 237 67 5 chrY 727574 727945 -23985134 + MSTD LTR MaLR 3 396 0 4778 257 55 48 chrY 727948 728613 -23984466 + MSTD-int LTR MaLR 3 662 -1073 2364 72 0 0 chrY 728613 728934 -23984145 + AluY SINE Alu 1 321 0 4778 257 55 48 chrY 728934 729985 -23983094 + MSTD-int LTR MaLR 662 1735 0 1067 268 78 10 chrY 729985 730291 -23982788 + MSTD LTR MaLR 1 327 -69 219 209 30 0 chrY 730345 730412 -23982667 + (TA)n Simple_repeat Simple_repeat 1 69 0 23 54 0 0 chrY 730477 730514 -23982565 + AT_rich Low_complexity Low_complexity 1 37 0 183 80 0 0 chrY 730515 730540 -23982539 + (TC)n Simple_repeat Simple_repeat 1 25 0 1934 212 100 25 chrY 732092 732573 -23980506 - MLT2B1 LTR ERVL -1 519 3 7698 180 46 11 chrY 732574 734024 -23979055 - ERVL-B1 LTR ERVL -6 5758 4258 7420 218 14 23 chrY 734026 735575 -23977504 - ERVL-B1 LTR ERVL -3846 1918 385 585 173 23 20 chrY 735575 735891 -23977188 + (TA)n Simple_repeat Simple_repeat 1 317 0 1034 293 10 7 chrY 735917 736224 -23976855 - ERVL-B1 LTR ERVL -5346 308 1 1755 222 50 48 chrY 736224 736743 -23976336 - MLT2B1 LTR ERVL 0 520 1 43 64 0 0 chrY 736832 736910 -23976169 + AT_rich Low_complexity Low_complexity 1 78 0 377 302 21 57 chrY 736910 737102 -23975977 - MIR SINE MIR -6 256 72 5042 139 31 3 chrY 738005 739075 -23974004 - L1PA16 LINE L1 0 6166 5107 27 0 0 0 chrY 739203 739230 -23973849 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chrY 739459 739480 -23973599 + AT_rich Low_complexity Low_complexity 1 21 0 792 154 0 29 chrY 739858 739994 -23973085 + FLAM_C SINE Alu 2 133 0 27 49 0 0 chrY 739994 740035 -23973044 + AT_rich Low_complexity Low_complexity 1 41 0 257 127 109 0 chrY 740059 740114 -23972965 - L1MA3 LINE L1 -1 6304 6244 248 212 0 15 chrY 740726 740792 -23972287 - L1MD2 LINE L1 -3 6356 6292 * 2815 100 0 2 chrY 740790 741191 -23971888 - L1PA7 LINE L1 -1227 4919 4520 6570 65 5 40 chrY 741191 742461 -23970618 + L1PA7 LINE L1 4911 6146 -8 450 211 42 0 chrY 742461 742556 -23970523 - L1MD1 LINE L1 -59 6183 6085 1051 254 99 9 chrY 742562 743033 -23970046 - L1MD1 LINE L1 -396 5963 5442 973 241 64 19 chrY 743034 743358 -23969721 - MSTD LTR MaLR -35 361 1 505 258 37 53 chrY 743602 743792 -23969287 - L2 LINE L2 -16 3297 3111 257 278 0 0 chrY 743887 743959 -23969120 - L2 LINE L2 -1015 2299 2228 306 333 95 26 chrY 745023 745254 -23967825 - MLT1J2 LTR MaLR -145 305 59 2090 163 22 3 chrY 747089 747444 -23965635 + MER57A LTR ERV1 1 362 -41 8524 144 29 41 chrY 747444 748892 -23964187 + MER57A-int LTR ERV1 14 1444 -6093 3463 124 4 0 chrY 748889 749379 -23963700 + MER57A-int LTR ERV1 6655 7146 -391 * 660 107 90 33 chrY 749379 749501 -23963578 + LTR54B LTR ERV1 3 131 -367 1540 113 43 31 chrY 749501 749596 -23963483 + MER57A-int LTR ERV1 7279 7371 -166 186 43 0 0 chrY 749596 749619 -23963460 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1540 113 43 31 chrY 749619 749779 -23963300 + MER57A-int LTR ERV1 7371 7537 0 2238 156 10 29 chrY 749779 750190 -23962889 + MER57A LTR ERV1 1 403 0 301 230 61 47 chrY 751151 751299 -23961780 + L1MC4 LINE L1 7892 8041 -1 6960 209 33 16 chrY 751332 753802 -23959277 - L1PA16 LINE L1 -144 6022 3486 22 0 0 0 chrY 753957 753979 -23959100 + AT_rich Low_complexity Low_complexity 1 22 0 20972 163 23 6 chrY 754077 756704 -23956375 + L1MA3 LINE L1 22 2728 -4837 2284 94 10 0 chrY 756704 757002 -23956077 + AluSc SINE Alu 1 301 -8 20972 163 23 6 chrY 757002 758012 -23955067 + L1MA3 LINE L1 2728 3720 -3845 272 239 0 28 chrY 758012 758083 -23954996 + L1P LINE L1 4890 4958 -1188 1316 122 0 0 chrY 758099 758280 -23954799 + AluJb SINE Alu 117 297 -15 9485 189 24 8 chrY 758296 758801 -23954278 + L1MA3 LINE L1 4624 5119 -2605 2865 104 0 5 chrY 758801 759215 -23953864 - L1PA13 LINE L1 -4 6159 5748 9485 189 24 8 chrY 759215 759451 -23953628 + L1MA3 LINE L1 5119 5350 -2374 6089 97 7 20 chrY 759451 760391 -23952688 + L1PA13 LINE L1 5231 6158 -5 9485 189 24 8 chrY 760391 762697 -23950382 + L1MA3 LINE L1 5350 7723 -1 227 333 14 0 chrY 763165 763234 -23949845 + MIR3 SINE MIR 124 193 -15 862 259 23 5 chrY 763248 763464 -23949615 - MER58A DNA MER1_type -4 220 1 1985 236 45 2 chrY 763923 764578 -23948501 - L1MB7 LINE L1 -301 5883 5197 2096 221 25 51 chrY 764597 765108 -23947971 - LTR53 LTR ERVL -21 498 1 4110 239 35 11 chrY 765332 765920 -23947159 - HERVL74 LTR ERVL -2335 3350 2728 2254 169 88 39 chrY 765920 766280 -23946799 + LTR49 LTR ERV1 1 401 -194 1857 162 0 17 chrY 766280 766577 -23946502 - AluJo SINE Alu -12 300 9 2254 169 88 39 chrY 766577 766783 -23946296 + LTR49 LTR ERV1 401 595 0 4110 239 35 11 chrY 766783 767179 -23945900 - HERVL74 LTR ERVL -2957 2728 2343 4091 118 14 62 chrY 767182 767908 -23945171 - LTR8 LTR ERV1 0 691 1 801 201 6 17 chrY 767920 768094 -23944985 - HERVL74 LTR ERVL -3423 2262 2091 2188 192 16 91 chrY 768209 768774 -23944305 - HERVL74 LTR ERVL -1483 2102 1623 1808 250 56 109 chrY 768799 769562 -23943517 - MER21B LTR ERV1 -124 739 17 549 211 14 19 chrY 769581 769795 -23943284 - HERVL74 LTR ERVL -4061 1624 1313 3804 172 33 7 chrY 769795 770488 -23942591 + MER50 LTR ERV1 1 711 -23 689 212 34 7 chrY 770569 770715 -23942364 - HERVL74 LTR ERVL -4368 1317 1168 2485 226 26 33 chrY 770715 770931 -23942148 + L1M3 LINE L1 4896 5112 -1071 1680 133 50 36 chrY 770931 771209 -23941870 - AluSx SINE Alu -27 285 4 2485 226 26 33 chrY 771209 771901 -23941178 + L1M3 LINE L1 5112 5787 -396 236 255 0 0 chrY 772120 772171 -23940908 - MER107 DNA MER1_type -46 151 101 1844 273 30 2 chrY 773139 773644 -23939435 - LTR53 LTR ERVL 0 519 1 2266 224 132 65 chrY 773644 774612 -23938467 - L1MB7 LINE L1 -944 5202 4142 1523 169 53 27 chrY 774612 774913 -23938166 - AluJo SINE Alu -1 311 3 2266 224 132 65 chrY 774913 775103 -23937976 - L1MB7 LINE L1 -2004 4142 3966 29 70 0 0 chrY 775165 775222 -23937857 + AT_rich Low_complexity Low_complexity 1 57 0 793 243 19 63 chrY 776789 777098 -23935981 + MLT2D LTR ERVL 83 475 -40 662 110 20 0 chrY 777928 778028 -23935051 - L1PA13 LINE L1 -265 5903 5802 1759 116 0 0 chrY 778029 778287 -23934792 + L1PA13 LINE L1 5902 6159 -4 458 75 15 0 chrY 778313 778380 -23934699 + (TA)n Simple_repeat Simple_repeat 2 69 0 2207 93 0 7 chrY 778748 779038 -23934041 - AluSx SINE Alu -24 288 1 24 0 0 0 chrY 779325 779349 -23933730 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chrY 780714 780735 -23932344 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chrY 781363 781390 -23931689 + AT_rich Low_complexity Low_complexity 1 27 0 228 287 124 39 chrY 781447 781576 -23931503 - MIR SINE MIR -52 210 71 312 191 119 79 chrY 781670 781796 -23931283 + L1MC3 LINE L1 5342 5472 -861 450 0 0 0 chrY 781799 781849 -23931230 + (TAAAA)n Simple_repeat Simple_repeat 5 54 0 5572 223 80 61 chrY 781850 782319 -23930760 + L1MC3 LINE L1 5658 6117 -1668 2219 102 13 0 chrY 782319 782624 -23930455 + AluSp SINE Alu 1 309 -4 5572 223 80 61 chrY 782624 783595 -23929484 + L1MC3 LINE L1 6117 7185 -600 249 213 0 0 chrY 783595 783642 -23929437 + MLT1H LTR MaLR 85 131 -418 5572 223 80 61 chrY 783642 783915 -23929164 + L1MC3 LINE L1 7185 7451 -334 8508 205 29 34 chrY 783924 785930 -23927149 + L1 LINE L1 13 2251 -5314 2005 144 3 0 chrY 786321 786620 -23926459 + AluSx SINE Alu 1 300 -12 1611 154 15 80 chrY 787374 787711 -23925368 - MER47A DNA MER2_type 0 366 52 318 188 100 25 chrY 788496 788576 -23924503 + MIR SINE MIR 103 188 -74 661 265 87 42 chrY 789111 789607 -23923472 - L1 LINE L1 -2983 3163 2635 358 270 0 63 chrY 789674 789848 -23923231 - L1 LINE L1 -3654 2492 2330 513 169 7 81 chrY 789878 790014 -23923065 - L1MB8 LINE L1 -1 6177 6052 * 4779 257 39 11 chrY 790013 791498 -23921581 - L1MEc LINE L1 -874 5341 3815 1598 203 70 0 chrY 791499 791858 -23921221 + Tigger2 DNA MER2_type 2 385 -2333 1401 124 26 0 chrY 791856 792089 -23920990 + Tigger2 DNA MER2_type 2404 2642 -76 * 267 205 27 89 chrY 792089 792201 -23920878 + L1 LINE L1 5062 5166 -2399 301 323 0 0 chrY 792201 792266 -23920813 - Tigger2 DNA MER2_type 0 2718 2654 3625 258 68 11 chrY 792266 792285 -23920794 - L1MEc LINE L1 -2501 3714 3698 1950 23 0 0 chrY 792285 792506 -23920573 - AluY SINE Alu -17 294 74 3625 258 68 11 chrY 792506 793992 -23919087 - L1MEc LINE L1 -2517 3698 2171 358 291 14 48 chrY 794024 794234 -23918845 + L1M4 LINE L1 2514 2716 -3430 441 298 98 46 chrY 794305 794674 -23918405 - L1MEc LINE L1 -4298 2098 1711 26 30 0 0 chrY 795698 795731 -23917348 + AT_rich Low_complexity Low_complexity 1 33 0 2238 92 0 16 chrY 796682 796986 -23916093 + AluSg SINE Alu 1 299 -11 501 245 35 0 chrY 797167 797310 -23915769 - MER63 DNA MER1_type 0 1060 913 591 219 39 0 chrY 797326 797454 -23915625 + L1M4b LINE L1 10 142 -6717 267 203 0 0 chrY 797456 797520 -23915559 + (TA)n Simple_repeat Simple_repeat 1 64 0 927 244 19 23 chrY 797802 798267 -23914812 + L1M4b LINE L1 400 921 -5938 3774 193 7 3 chrY 798272 799007 -23914072 - L1 LINE L1 -1910 4236 3499 1619 177 71 18 chrY 799008 799077 -23914002 + L1 LINE L1 4243 4307 -1839 2363 91 0 0 chrY 799077 799384 -23913695 + AluSc SINE Alu 1 307 -2 1619 177 71 18 chrY 799384 799710 -23913369 + L1 LINE L1 4307 4659 -1487 1718 109 0 0 chrY 799711 799940 -23913139 + AluSq SINE Alu 1 229 -84 6958 248 38 9 chrY 800006 802080 -23910999 - L1PA15-16 LINE L1 -1144 5705 3693 2807 7 0 0 chrY 802080 802390 -23910689 - AluYa5 SINE Alu -1 310 1 6958 248 38 9 chrY 802390 803213 -23909866 - L1PA15-16 LINE L1 -3156 3693 1246 4009 107 20 3 chrY 803385 803975 -23909104 - MER4A LTR ERV1 0 600 1 318 276 54 135 chrY 804101 804493 -23908586 - L1M2 LINE L1 -5781 1068 709 936 330 40 12 chrY 805161 805561 -23907518 - L1M2 LINE L1 -6429 420 10 6904 154 34 67 chrY 805564 807019 -23906060 - Tigger2 DNA MER2_type -756 1962 557 10429 177 37 12 chrY 807020 809307 -23903772 + Ricksha DNA DNA 296 2689 -557 324 100 0 0 chrY 809307 809357 -23903722 + L1 LINE L1 4784 4833 -1313 1394 280 31 50 chrY 809480 810043 -23903036 + L1MCb LINE L1 75 628 -5417 1792 151 27 3 chrY 810043 810381 -23902698 - L1MA9 LINE L1 -2 6310 5965 1394 280 31 50 chrY 810381 810403 -23902676 + L1MCb LINE L1 628 649 -5396 982 251 81 10 chrY 810383 810884 -23902195 + L1MCb LINE L1 2285 2837 -3727 * 1876 104 0 84 chrY 810884 811234 -23901845 + AluSq SINE Alu 1 324 0 982 251 81 10 chrY 811234 811312 -23901767 + L1MCb LINE L1 2837 2908 -3656 189 0 0 0 chrY 811375 811396 -23901683 + (CCA)n Simple_repeat Simple_repeat 1 21 0 10383 250 54 15 chrY 812432 817066 -23896013 + L1MB8 LINE L1 1621 6135 -1032 876 193 28 111 chrY 817065 817194 -23895885 + L1MB8 LINE L1 6596 6734 -465 * 1867 166 0 0 chrY 817194 817495 -23895584 - AluSx SINE Alu -11 301 1 876 193 28 111 chrY 817495 817617 -23895462 + L1MB8 LINE L1 6734 6824 -375 863 102 8 0 chrY 817617 817745 -23895334 + L1MA2 LINE L1 6169 6297 -7 876 193 28 111 chrY 817745 817779 -23895300 + L1MB8 LINE L1 6824 6859 -340 21 36 0 0 chrY 817810 817838 -23895241 + AT_rich Low_complexity Low_complexity 1 28 0 180 0 0 0 chrY 817974 817994 -23895085 + (TAAAAA)n Simple_repeat Simple_repeat 2 21 0 2573 139 27 2 chrY 818307 818754 -23894325 - L1MA2 LINE L1 -8 7715 7258 8094 192 27 29 chrY 818754 819409 -23893670 - L1MA2 LINE L1 -679 7044 6389 282 27 0 9 chrY 819409 819457 -23893622 + AluY SINE Alu 261 301 0 8094 192 27 29 chrY 819457 819743 -23893336 - L1MA2 LINE L1 -1334 6389 6104 414 0 0 0 chrY 819743 819789 -23893290 + (TG)n Simple_repeat Simple_repeat 1 46 0 8094 192 27 29 chrY 819789 821036 -23892043 - L1MA2 LINE L1 -1619 6104 4814 5814 220 42 14 chrY 821041 822310 -23890769 - L1MA2 LINE L1 -6240 1325 22 2107 127 0 0 chrY 822897 823197 -23889882 - AluSx SINE Alu -12 300 1 284 274 24 0 chrY 823526 823610 -23889469 + MIR3 SINE MIR 121 206 -2 29 28 0 0 chrY 824167 824203 -23888876 + AT_rich Low_complexity Low_complexity 1 36 0 327 85 0 0 chrY 826491 826538 -23886541 + (CA)n Simple_repeat Simple_repeat 2 48 0 482 301 45 6 chrY 826698 826854 -23886225 - MIR SINE MIR -55 207 46 261 362 26 17 chrY 826915 827031 -23886048 + L2 LINE L2 3197 3313 0 3419 220 34 11 chrY 827307 828165 -23884914 - L1MC3 LINE L1 -2 7783 6906 266 0 0 29 chrY 828165 828200 -23884879 + (TTTTG)n Simple_repeat Simple_repeat 1 34 0 1176 248 4 0 chrY 828203 828469 -23884610 - AluJo SINE Alu -34 278 12 1410 246 48 73 chrY 828475 829040 -23884039 - L1MC3 LINE L1 -863 6922 6372 450 269 0 8 chrY 829055 829174 -23883905 + L1MC4a LINE L1 1702 1819 -4565 4126 267 94 20 chrY 829178 831416 -23881663 + L1MC4a LINE L1 1919 4385 -1997 252 59 0 0 chrY 831416 831450 -23881629 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 4126 267 94 20 chrY 831450 831792 -23881287 + L1MC4a LINE L1 4385 4700 -1682 727 178 16 0 chrY 831793 831922 -23881157 + FLAM_C SINE Alu 1 131 -12 814 246 33 11 chrY 831925 832197 -23880882 + L1MC4a LINE L1 4693 4970 -1412 3597 271 75 41 chrY 832199 833354 -23879725 + MSTD-int LTR MaLR 541 1735 0 1001 215 75 31 chrY 833354 833703 -23879376 + MSTD LTR MaLR 1 396 0 4797 202 34 4 chrY 833703 834664 -23878415 + ERVL-B1 LTR ERVL 4768 5757 -7 2296 201 47 38 chrY 834664 835171 -23877908 + MLT2B1 LTR ERVL 1 512 -8 392 184 31 20 chrY 835172 835270 -23877809 + L1MB8 LINE L1 6074 6172 -6 690 224 82 0 chrY 835461 835608 -23877471 + L1PA13 LINE L1 1 159 -6628 * 14072 175 19 11 chrY 835606 836434 -23876645 + L1PA13 LINE L1 3007 3827 -2987 411 73 0 0 chrY 836434 836489 -23876590 + (TA)n Simple_repeat Simple_repeat 1 55 0 14072 175 19 11 chrY 836489 839371 -23873708 + L1PA13 LINE L1 3827 6744 -70 220 211 11 56 chrY 839996 840086 -23872993 + A-rich Low_complexity Low_complexity 4 89 0 828 302 44 40 chrY 840093 840567 -23872512 + L1MC4a LINE L1 5643 6118 -1926 262 64 0 43 chrY 840603 840650 -23872429 + (TA)n Simple_repeat Simple_repeat 2 46 0 316 253 10 40 chrY 840652 840751 -23872328 - L1MC4 LINE L1 -1340 6702 6607 349 230 65 50 chrY 840861 841000 -23872079 + L1MC4a LINE L1 6336 6476 -1568 * 3355 220 40 23 chrY 840992 842651 -23870428 + L1MC2 LINE L1 4199 5393 -753 1334 198 34 22 chrY 842652 842976 -23870103 + L1MC2 LINE L1 6006 6333 -11 3439 225 73 24 chrY 843060 843918 -23869161 + L1MD2 LINE L1 5276 6194 -165 2247 62 21 0 chrY 843918 844208 -23868871 - AluY SINE Alu -15 296 1 3439 225 73 24 chrY 844208 844374 -23868705 + L1MD2 LINE L1 6194 6350 -9 23 0 0 0 chrY 846365 846388 -23866691 + AT_rich Low_complexity Low_complexity 1 23 0 996 296 47 73 chrY 846865 847862 -23865217 + L1ME LINE L1 490 1460 -5070 593 307 106 45 chrY 847863 849049 -23864030 + L1ME LINE L1 1413 2713 -3929 2847 203 50 9 chrY 849059 849911 -23863168 + L1MC2 LINE L1 4967 5850 -494 645 333 66 35 chrY 849912 850566 -23862513 - L1M4 LINE L1 -1531 4615 3942 186 43 0 0 chrY 850569 850592 -23862487 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1766 120 14 25 chrY 850595 850879 -23862200 - AluSx SINE Alu -31 281 1 591 76 0 0 chrY 851511 851628 -23861451 - AluY SINE Alu 0 320 204 1944 114 3 7 chrY 851702 852026 -23861053 - AluSg SINE Alu 0 310 1 22 35 0 0 chrY 853327 853356 -23859723 + AT_rich Low_complexity Low_complexity 1 29 0 2177 90 13 26 chrY 853543 853854 -23859225 + AluSx SINE Alu 1 307 -5 2162 82 3 44 chrY 854060 854379 -23858700 + AluY SINE Alu 1 306 -5 424 275 101 26 chrY 858257 858753 -23854326 - L1ME LINE L1 -594 5572 5040 342 125 0 31 chrY 858758 858822 -23854257 - L1PA8 LINE L1 -4 6168 6107 1631 74 83 0 chrY 858822 859052 -23854027 - L1PA8 LINE L1 -30 6142 5894 1300 129 23 5 chrY 859121 859338 -23853741 - pTR5 LTR ERV1 -2046 392 172 365 224 10 0 chrY 859341 859439 -23853640 - LTR30 LTR ERV1 -80 642 544 4133 136 59 79 chrY 859439 860456 -23852623 - pTR5 LTR ERV1 -413 2025 743 21 0 0 0 chrY 861106 861127 -23851952 + AT_rich Low_complexity Low_complexity 1 21 0 34 42 0 0 chrY 861966 862014 -23851065 + AT_rich Low_complexity Low_complexity 1 48 0 212 250 0 0 chrY 862553 862597 -23850482 + (TG)n Simple_repeat Simple_repeat 2 45 0 21 36 0 0 chrY 863053 863081 -23849998 + AT_rich Low_complexity Low_complexity 1 28 0 32209 109 10 44 chrY 864855 867250 -23845829 - L1PA7 LINE L1 -5 6149 3675 2227 105 0 23 chrY 867250 867555 -23845524 - AluY SINE Alu -13 298 1 32209 109 10 44 chrY 867555 871129 -23841950 - L1PA7 LINE L1 -2479 3675 414 243 0 0 0 chrY 871129 871156 -23841923 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 32209 109 10 44 chrY 871156 871546 -23841533 - L1PA7 LINE L1 -5740 414 12 1059 166 5 49 chrY 871577 871782 -23841297 + AluJb SINE Alu 99 294 -18 2445 170 17 7 chrY 872122 872539 -23840540 - MST-int LTR MaLR -173 1478 1058 230 307 30 10 chrY 873012 873113 -23839966 - L1ME LINE L1 -5962 108 6 23 0 0 0 chrY 873113 873136 -23839943 + AT_rich Low_complexity Low_complexity 1 23 0 26 30 0 0 chrY 874175 874208 -23838871 + AT_rich Low_complexity Low_complexity 1 33 0 345 208 0 0 chrY 875195 875272 -23837807 + (TATATG)n Simple_repeat Simple_repeat 6 82 0 331 311 0 0 chrY 875273 875363 -23837716 + L1MC4 LINE L1 6615 6704 -1338 22 56 0 0 chrY 875544 875580 -23837499 + AT_rich Low_complexity Low_complexity 1 36 0 186 200 0 0 chrY 875956 876002 -23837077 + (TA)n Simple_repeat Simple_repeat 2 50 -6 2231 202 103 41 chrY 876002 876738 -23836341 + LTR1 LTR ERV1 1 782 -3 186 200 0 0 chrY 876738 876746 -23836333 + (TA)n Simple_repeat Simple_repeat 49 56 0 21 36 0 0 chrY 879368 879396 -23833683 + AT_rich Low_complexity Low_complexity 1 28 0 306 325 107 24 chrY 880389 880558 -23832521 + L1MEd LINE L1 3 185 -5934 2164 149 20 73 chrY 880596 880793 -23832286 + MSTB LTR MaLR 1 207 -219 2034 154 0 0 chrY 880793 881105 -23831974 + AluSx SINE Alu 1 312 0 2164 149 20 73 chrY 881105 881357 -23831722 + MSTB LTR MaLR 207 426 0 276 331 84 24 chrY 881395 881561 -23831518 + L1MEd LINE L1 269 444 -5675 1166 304 22 25 chrY 881740 882141 -23830938 + MLT1E3 LTR MaLR 225 624 0 224 149 21 0 chrY 882496 882543 -23830536 + (TCTA)n Simple_repeat Simple_repeat 3 50 0 642 284 148 33 chrY 882554 883076 -23830003 + L1MC4a LINE L1 5290 5871 -1937 1979 168 94 3 chrY 883256 883648 -23829431 - MSTA LTR MaLR 0 428 1 2139 145 23 6 chrY 883648 884000 -23829079 - MSTA-int LTR MaLR 0 1651 1294 326 309 44 39 chrY 884076 884257 -23828822 + LTR16C LTR ERVL 260 441 -50 380 293 94 17 chrY 884383 884735 -23828344 + L1ME3A LINE L1 5493 5878 -288 435 151 65 11 chrY 884814 884907 -23828172 + MER4A LTR ERV1 1 98 -566 1590 140 164 75 chrY 884907 885278 -23827801 + MER4A LTR ERV1 261 664 0 2368 105 58 43 chrY 885281 885598 -23827481 + MER4A-int LTR ERV1 1 312 -6286 315 0 0 0 chrY 885598 885633 -23827446 + (TG)n Simple_repeat Simple_repeat 1 35 0 2368 105 58 43 chrY 885633 885907 -23827172 + MER4A-int LTR ERV1 312 660 -5938 1658 77 89 52 chrY 885894 886289 -23826790 + MER4A-int LTR ERV1 504 817 -4198 * 3238 77 80 4 chrY 886282 886792 -23826287 + MER4A-int LTR ERV1 1809 2357 -4241 281 154 19 0 chrY 886792 886844 -23826235 + MER4A LTR ERV1 608 660 -4 1905 160 150 5 chrY 887284 887658 -23825421 + MSTA LTR MaLR 1 428 0 387 41 0 0 chrY 888563 888612 -23824467 + (TG)n Simple_repeat Simple_repeat 2 50 0 192 40 0 0 chrY 889261 889286 -23823793 + (A)n Simple_repeat Simple_repeat 1 25 0 24 0 0 0 chrY 889640 889664 -23823415 + AT_rich Low_complexity Low_complexity 1 24 0 268 358 80 11 chrY 889971 890093 -23822986 - MIR SINE MIR -16 246 105 2023 90 8 0 chrY 890093 890359 -23822720 + AluSq SINE Alu 38 305 -8 268 358 80 11 chrY 890359 890423 -23822656 - MIR SINE MIR -157 105 47 1596 201 0 14 chrY 891049 891338 -23821741 + AluJo SINE Alu 3 287 -25 273 29 0 0 chrY 891380 891414 -23821665 + (CA)n Simple_repeat Simple_repeat 2 35 0 234 0 0 0 chrY 891573 891599 -23821480 + (CA)n Simple_repeat Simple_repeat 2 27 0 253 254 18 0 chrY 891728 891783 -23821296 - L2 LINE L2 -14 3299 3244 2155 130 3 0 chrY 892830 893137 -23819942 + AluSq SINE Alu 3 310 -3 908 216 5 32 chrY 893225 893395 -23819684 + Tigger1 DNA MER2_type 1 165 -2253 3408 101 63 51 chrY 893395 893998 -23819081 - MER4B LTR ERV1 0 610 1 908 216 5 32 chrY 893998 894040 -23819039 + Tigger1 DNA MER2_type 165 207 -2211 505 237 63 78 chrY 894040 894400 -23818679 + LTR18B LTR ERVL 1 600 -2 12567 153 17 19 chrY 894408 895469 -23817610 + Tigger1 DNA MER2_type 203 1264 -1154 2384 77 0 0 chrY 895469 895755 -23817324 - AluY SINE Alu -25 286 1 12567 153 17 19 chrY 895755 896912 -23816167 + Tigger1 DNA MER2_type 1264 2417 -1 1138 232 3 35 chrY 897594 897913 -23815166 - L1PBb LINE L1 -869 6715 6407 6057 133 193 90 chrY 897913 899451 -23813628 - pTR5 LTR ERV1 -2 2436 741 11167 232 28 15 chrY 899463 899848 -23813231 - L1PBb LINE L1 -1183 6401 6023 2189 197 26 5 chrY 899848 900265 -23812814 - MSTB LTR MaLR 0 426 1 11167 232 28 15 chrY 900265 904380 -23808699 - L1PBb LINE L1 -1561 6023 1752 551 313 38 34 chrY 904572 904837 -23808242 - L1PBb LINE L1 -5788 1797 1532 225 222 0 0 chrY 904994 905039 -23808040 + L1M2b LINE L1 168 212 -6997 518 175 21 10 chrY 905087 905184 -23807895 + MER4A LTR ERV1 1 98 -566 1612 136 14 36 chrY 905184 905536 -23807543 + MER4A LTR ERV1 261 663 -1 504 246 8 8 chrY 905538 905660 -23807419 - L1PBb LINE L1 -7450 131 10 821 214 60 15 chrY 905730 905931 -23807148 + L1M4b LINE L1 4 213 -6646 524 125 0 0 chrY 905931 906011 -23807068 + MADE1 DNA Mariner 1 80 0 233 282 84 0 chrY 906081 906152 -23806927 + MER50 LTR ERV1 46 122 -612 1136 270 122 58 chrY 906153 906342 -23806737 + MER50 LTR ERV1 26 201 -533 7562 29 5 0 chrY 906342 907438 -23805641 + L1PA5 LINE L1 5053 6152 -2 1136 270 122 58 chrY 907438 907810 -23805269 + MER50 LTR ERV1 201 633 -101 3267 106 11 42 chrY 907810 908337 -23804742 - MER9 LTR ERVK 0 511 1 1136 270 122 58 chrY 908337 908396 -23804683 + MER50 LTR ERV1 633 687 -47 393 274 28 9 chrY 908426 908532 -23804547 + MER50-int LTR ERV1 18 125 -7080 6182 255 22 50 chrY 908596 910392 -23802687 + MER50-int LTR ERV1 97 1843 -5362 2783 162 4 35 chrY 910428 910886 -23802193 + MER50-int LTR ERV1 1004 1447 -3433 2138 131 0 0 chrY 910886 911183 -23801896 + AluSx SINE Alu 1 297 -15 2783 162 4 35 chrY 911183 911217 -23801862 + MER50-int LTR ERV1 1447 1481 -3399 3013 154 20 15 chrY 911217 911992 -23801087 + MER50-int LTR ERV1 3391 4394 -486 414 168 76 42 chrY 912096 912215 -23800864 + MER50-int LTR ERV1 3608 3730 -2868 922 140 29 22 chrY 912255 912462 -23800617 + MER50-int LTR ERV1 3738 4539 -341 482 133 0 0 chrY 912455 912530 -23800549 + MER50-int LTR ERV1 2883 2957 -2989 * 792 210 0 6 chrY 912524 912681 -23800398 + MER50-int LTR ERV1 3689 3844 -3693 * 1052 219 19 0 chrY 912678 912883 -23800196 + MER50-int LTR ERV1 6180 6388 -817 546 345 15 8 chrY 912867 913134 -23799945 + MER50-int LTR ERV1 3744 4012 -273 * 776 263 44 19 chrY 913149 913354 -23799725 + MER50-int LTR ERV1 6985 7194 -11 380 273 109 0 chrY 913358 913468 -23799611 + MER50 LTR ERV1 1 122 -612 1206 284 128 36 chrY 913469 914078 -23799001 + MER50 LTR ERV1 26 690 -44 3055 293 109 19 chrY 914138 916040 -23797039 + L1M4b LINE L1 228 2263 -4696 1894 262 51 8 chrY 916010 916873 -23796206 + L1M4b LINE L1 3279 4178 -2779 * 2639 216 100 7 chrY 916992 918067 -23795012 - L1MB8 LINE L1 0 6178 4993 460 256 15 36 chrY 918106 918243 -23794836 + MERVL-C2 LTR ERVL 3288 3421 -2064 * 4825 223 23 2 chrY 918224 919191 -23793888 + MERVL-C2 LTR ERVL 3525 4511 -1253 1587 220 25 35 chrY 919191 919587 -23793492 - MER50 LTR ERV1 -1 733 342 1448 84 0 0 chrY 919588 919767 -23793312 - AluY SINE Alu 0 311 133 2499 68 0 0 chrY 919767 920074 -23793005 - AluY SINE Alu -4 307 1 862 185 13 13 chrY 920154 920311 -23792768 - MER50 LTR ERV1 -566 168 12 387 335 7 7 chrY 920402 920557 -23792522 - MER52A LTR ERV1 0 1755 1601 841 238 49 117 chrY 920560 920971 -23792108 - MER52A LTR ERV1 -281 1474 1092 * 1064 216 52 93 chrY 920956 921280 -23791799 - MER52A LTR ERV1 -785 970 660 9097 113 12 24 chrY 921282 922269 -23790810 - MER52-int LTR ERV1 0 7091 6124 1963 152 3 3 chrY 922269 922566 -23790513 - AluSx SINE Alu -14 298 2 9097 113 12 24 chrY 922566 922937 -23790142 - MER52-int LTR ERV1 -967 6124 5750 19314 159 27 17 chrY 922952 926498 -23786581 - MER52-int LTR ERV1 -2223 4868 1003 191 269 30 45 chrY 926513 926580 -23786499 + MIR3 SINE MIR 135 200 -8 2023 242 42 12 chrY 926580 927154 -23785925 + MERVL-C2 LTR ERVL 5167 5757 -7 1757 234 46 7 chrY 927163 927598 -23785481 + MLT2C2 LTR ERVL 11 462 -2 21 57 0 0 chrY 927624 927659 -23785420 + AT_rich Low_complexity Low_complexity 1 35 0 415 259 41 53 chrY 927704 927874 -23785205 + MER3 DNA MER1_type 28 195 -14 1492 290 37 27 chrY 928178 928767 -23784312 - L1MEc LINE L1 -5765 631 37 196 159 0 43 chrY 928852 928921 -23784158 + A-rich Low_complexity Low_complexity 4 69 0 2051 73 0 15 chrY 929050 929311 -23783768 - AluY SINE Alu -16 295 39 21 36 0 0 chrY 929700 929728 -23783351 + AT_rich Low_complexity Low_complexity 1 28 0 2306 97 10 0 chrY 930439 930739 -23782340 + AluSc SINE Alu 1 303 -6 294 238 203 21 chrY 930773 930916 -23782163 - L1MD3 LINE L1 0 7995 7827 227 88 70 44 chrY 930916 931030 -23782049 + (TA)n Simple_repeat Simple_repeat 1 117 0 785 223 102 28 chrY 931036 931319 -23781760 - L1MC3 LINE L1 -185 7600 7297 * 1033 277 20 3 chrY 931318 931614 -23781465 - L1MC3 LINE L1 -926 6859 6559 1143 216 37 11 chrY 931662 931930 -23781149 - L1MC3 LINE L1 -1210 6575 6301 1222 237 58 6 chrY 931962 932287 -23780792 - L1MB7 LINE L1 -20 6164 5823 3649 223 60 27 chrY 932369 933509 -23779570 - L1MC2 LINE L1 -144 6200 4980 554 106 0 0 chrY 933509 933603 -23779476 - L1PA15 LINE L1 -4 6161 6068 3649 223 60 27 chrY 933603 934321 -23778758 - L1MC2 LINE L1 -1364 4980 4288 4139 158 53 12 chrY 934321 935154 -23777925 + L1MA7 LINE L1 5425 6291 0 873 274 50 6 chrY 935167 935484 -23777595 - L1MC2 LINE L1 -3386 2760 2430 495 157 56 0 chrY 935498 935587 -23777492 - AluJ/FLAM SINE Alu -218 94 1 9615 224 63 16 chrY 935587 939440 -23773639 - L1PB4 LINE L1 -154 6705 2662 5825 236 20 7 chrY 939414 941656 -23771423 - L1PA13 LINE L1 -3160 3637 1355 * 2616 142 70 32 chrY 941653 941993 -23771086 + THE1-int LTR MaLR 811 1173 -407 * 2350 98 0 0 chrY 941993 942288 -23770791 + AluSg SINE Alu 1 295 -15 2616 142 70 32 chrY 942288 942390 -23770689 + THE1-int LTR MaLR 1173 1270 -310 6030 124 30 20 chrY 942402 943492 -23769587 + L1MA2 LINE L1 5206 6304 0 1074 267 49 25 chrY 943525 944322 -23768757 - L1M4 LINE L1 -3473 2909 2094 2494 261 68 29 chrY 944392 945575 -23767504 - L1M4 LINE L1 -4485 1899 777 915 234 98 51 chrY 945990 946438 -23766641 + L1ME1 LINE L1 4709 5177 -969 * 24913 153 26 17 chrY 946432 950667 -23762412 - L1PA8 LINE L1 -20 6467 2171 2193 61 0 0 chrY 950667 950930 -23762149 + AluY SINE Alu 36 298 -13 24913 153 26 17 chrY 950930 952344 -23760735 - L1PA8 LINE L1 -4316 2171 771 2503 191 14 14 chrY 952350 952848 -23760231 - L1PA8 LINE L1 -5373 502 5 1027 277 110 22 chrY 952962 952988 -23760091 + L1ME1 LINE L1 5285 5307 -859 222 37 0 0 chrY 952988 953015 -23760064 + (CAA)n Simple_repeat Simple_repeat 1 27 0 1027 277 110 22 chrY 953015 953547 -23759532 + L1ME1 LINE L1 5307 5898 -268 2366 223 13 2 chrY 953549 954002 -23759077 + MLT2B2 LTR ERVL 1 458 -57 271 257 0 0 chrY 954002 954072 -23759007 + CT-rich Low_complexity Low_complexity 2 71 0 2650 113 19 16 chrY 954896 955322 -23757757 - L1PA8 LINE L1 -1089 5057 4631 6542 74 18 9 chrY 955324 956413 -23756666 + L1PA8 LINE L1 5060 6156 -16 2327 95 3 0 chrY 956417 956713 -23756366 - AluSg SINE Alu -13 297 1 2887 155 20 0 chrY 956738 957229 -23755850 - L1PA13 LINE L1 -11 6152 5652 3439 212 21 0 chrY 957279 958024 -23755055 + L1P4 LINE L1 3991 4751 -1395 2178 80 48 0 chrY 958026 958315 -23754764 + AluSg SINE Alu 1 303 -7 216 0 0 0 chrY 958321 958345 -23754734 + (A)n Simple_repeat Simple_repeat 1 24 0 23 54 0 0 chrY 960603 960640 -23752439 + AT_rich Low_complexity Low_complexity 1 37 0 739 183 38 27 chrY 962533 962716 -23750363 + MIR SINE MIR 31 213 -49 2891 183 8 8 chrY 962815 963682 -23749397 + L1P4 LINE L1 4739 5603 -558 28 48 0 0 chrY 964805 964847 -23748232 + AT_rich Low_complexity Low_complexity 1 42 0 31 0 0 0 chrY 964990 965021 -23748058 + AT_rich Low_complexity Low_complexity 1 31 0 33 43 0 0 chrY 965060 965107 -23747972 + AT_rich Low_complexity Low_complexity 1 47 0 234 0 0 0 chrY 965110 965136 -23747943 + (TG)n Simple_repeat Simple_repeat 1 26 0 528 342 16 5 chrY 965236 965423 -23747656 - MIR SINE MIR -56 206 18 2069 144 3 0 chrY 965712 966017 -23747062 + AluSx SINE Alu 1 306 -6 941 258 34 18 chrY 966484 966841 -23746238 + MSTD LTR MaLR 1 396 0 1892 155 117 8 chrY 967084 967470 -23745609 + MSTA LTR MaLR 1 428 0 31 26 0 0 chrY 967732 967770 -23745309 + AT_rich Low_complexity Low_complexity 1 38 0 359 256 56 50 chrY 968160 968340 -23744739 + L1MCc LINE L1 28 208 -6215 482 279 63 11 chrY 968608 968877 -23744202 + L1ME2 LINE L1 4960 5242 -904 1426 230 70 28 chrY 968900 968969 -23744110 + L1ME2 LINE L1 5663 5728 -436 2224 109 0 0 chrY 968969 969272 -23743807 + AluSc SINE Alu 2 304 -5 1426 230 70 28 chrY 969272 969675 -23743404 + L1ME2 LINE L1 5728 6155 -9 324 374 0 8 chrY 969715 969838 -23743241 + MER5A DNA MER1_type 64 185 -4 2058 268 51 45 chrY 969958 970715 -23742364 - L1MEc LINE L1 -4923 1473 706 2191 64 3 7 chrY 970715 971039 -23742040 + AluY SINE Alu 1 311 0 2058 268 51 45 chrY 971039 971338 -23741741 - L1MEc LINE L1 -5690 706 410 488 264 61 17 chrY 971490 971721 -23741358 - L1MDb LINE L1 -5000 1083 843 5048 129 15 4 chrY 972017 972815 -23740264 - L1PA16 LINE L1 0 6166 5360 444 301 81 56 chrY 972875 973284 -23739795 - L1MDb LINE L1 -5416 654 236 35 63 0 0 chrY 974348 974411 -23738668 + AT_rich Low_complexity Low_complexity 1 63 0 187 259 12 111 chrY 974549 974630 -23738449 - L2 LINE L2 -4 3309 3237 42 0 0 0 chrY 974806 974848 -23738231 + AT_rich Low_complexity Low_complexity 1 42 0 1645 142 82 51 chrY 975131 975314 -23737765 + THE1B LTR MaLR 1 177 -187 204 40 0 0 chrY 975314 975339 -23737740 + (TC)n Simple_repeat Simple_repeat 1 25 0 1645 142 82 51 chrY 975339 975508 -23737571 + THE1B LTR MaLR 177 364 0 7455 148 106 51 chrY 975510 977005 -23736074 + THE1B-int LTR MaLR 3 1580 0 1603 157 74 44 chrY 977005 977369 -23735710 + THE1C LTR MaLR 1 375 0 1659 265 40 19 chrY 977370 977841 -23735238 + LTR40a LTR ERVL 37 517 -2 2624 183 66 74 chrY 978723 978943 -23734136 + MER67B LTR ERV1 1 221 -440 2757 118 47 2 chrY 978943 979408 -23733671 - LTR19A LTR ERV1 0 486 1 2624 183 66 74 chrY 979408 979514 -23733565 + MER67B LTR ERV1 221 326 -335 2662 48 0 0 chrY 979514 979825 -23733254 - AluY SINE Alu 0 311 1 2624 183 66 74 chrY 979825 980163 -23732916 + MER67B LTR ERV1 326 661 0 281 360 48 0 chrY 980816 980963 -23732116 + MIR SINE MIR 30 183 -79 1746 179 107 87 chrY 980965 981553 -23731526 + MER4A LTR ERV1 1 600 0 202 390 77 16 chrY 981780 981962 -23731117 + L3 LINE CR1 115 307 -1270 339 352 138 15 chrY 982541 982737 -23730342 + L3 LINE CR1 473 692 -885 351 391 87 16 chrY 982826 983138 -23729941 + L3 LINE CR1 1235 1568 -9 24 0 0 0 chrY 983182 983206 -23729873 + AT_rich Low_complexity Low_complexity 1 24 0 2397 100 42 50 chrY 983384 983764 -23729315 + MER51B LTR ERV1 1 377 0 2421 148 76 17 chrY 984034 984493 -23728586 - LTR19A LTR ERV1 0 486 1 258 376 11 0 chrY 984811 984904 -23728175 - MIR3 SINE MIR -102 106 13 22 35 0 0 chrY 986904 986933 -23726146 + AT_rich Low_complexity Low_complexity 1 29 0 24 53 0 0 chrY 986987 987025 -23726054 + AT_rich Low_complexity Low_complexity 1 38 0 257 280 76 0 chrY 988516 988634 -23724445 - L1MC/D LINE L1 -2015 5793 5667 26 0 0 0 chrY 988634 988660 -23724419 + AT_rich Low_complexity Low_complexity 1 26 0 254 299 17 34 chrY 988676 988793 -23724286 - L1MC/D LINE L1 -2200 5585 5471 641 261 67 15 chrY 989375 989570 -23723509 - MIR SINE MIR -57 205 1 1541 201 48 20 chrY 989745 990137 -23722942 + L1MB1 LINE L1 5761 6163 -5 225 0 0 0 chrY 990796 990821 -23722258 + (CA)n Simple_repeat Simple_repeat 2 26 0 348 339 46 0 chrY 990963 991072 -23722007 - L2 LINE L2 -1 3271 3158 323 365 52 16 chrY 991596 991788 -23721291 - MIR SINE MIR -19 243 45 1535 80 0 68 chrY 992423 992506 -23720573 + L1MA1 LINE L1 6057 6144 -158 2102 126 0 3 chrY 992506 992816 -23720263 - AluSx SINE Alu -3 309 1 1535 80 0 68 chrY 992816 992996 -23720083 + L1MA1 LINE L1 6144 6302 0 1338 153 36 0 chrY 993555 993777 -23719302 + MER30 DNA MER1_type 1 230 0 3143 213 50 48 chrY 994205 995039 -23718040 - L1MA10 LINE L1 -3 6331 5496 1988 91 66 3 chrY 995039 995325 -23717754 - AluSx SINE Alu -8 304 1 3501 212 85 24 chrY 995373 995841 -23717238 - L1MA8 LINE L1 -10 6281 5843 441 0 0 0 chrY 995841 995890 -23717189 + (TA)n Simple_repeat Simple_repeat 2 50 0 3501 212 85 24 chrY 995890 996544 -23716535 - L1MA8 LINE L1 -448 5843 5092 827 246 10 0 chrY 996533 996728 -23716351 + L1 LINE L1 4030 4226 -1920 * 7194 215 176 12 chrY 996753 998501 -23714578 + L1M1 LINE L1 13 2046 -5519 * 10659 191 58 42 chrY 998498 999590 -23713489 + L1M1 LINE L1 2565 3638 -3927 180 97 0 0 chrY 999590 999621 -23713458 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 10659 191 58 42 chrY 999621 1000455 -23712624 + L1M1 LINE L1 3638 4457 -3108 1039 116 22 6 chrY 1000455 1000636 -23712443 + L1MA1 LINE L1 6119 6302 0 10659 191 58 42 chrY 1000636 1001416 -23711663 + L1M1 LINE L1 4457 5223 -2342 639 140 0 0 chrY 1001416 1001516 -23711563 - FLAM_C SINE Alu -12 131 32 10659 191 58 42 chrY 1001516 1002832 -23710247 + L1M1 LINE L1 5223 6753 -812 236 164 0 55 chrY 1002861 1002916 -23710163 + Alu SINE Alu 251 302 0 2896 176 14 9 chrY 1002934 1003503 -23709576 + L1 LINE L1 4553 5124 -1022 2003 141 3 3 chrY 1003547 1003565 -23709514 - AluSx SINE Alu 0 312 295 186 43 0 0 chrY 1003565 1003588 -23709491 + (TATG)n Simple_repeat Simple_repeat 2 24 0 2003 141 3 3 chrY 1003588 1003881 -23709198 - AluSx SINE Alu -16 296 1 26 30 0 0 chrY 1004285 1004318 -23708761 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chrY 1004544 1004565 -23708514 + AT_rich Low_complexity Low_complexity 1 21 0 204 299 35 23 chrY 1004896 1004983 -23708096 - MIR SINE MIR -116 146 59 6152 156 5 1 chrY 1006050 1007014 -23706065 - L1PA14 LINE L1 -4895 2686 1719 9596 233 46 22 chrY 1007021 1008375 -23704704 + L1PA14 LINE L1 2711 4030 -3554 2010 164 13 24 chrY 1008375 1008752 -23704327 - THE1C LTR MaLR -2 373 1 9596 233 46 22 chrY 1008752 1010057 -23703022 + L1PA14 LINE L1 4030 5426 -2158 1830 176 83 18 chrY 1010057 1010575 -23702504 + MLT2A2 LTR ERVL 1 546 -8 6519 199 31 3 chrY 1010578 1011238 -23701841 + L1PA14 LINE L1 5421 6062 -1537 2652 20 7 0 chrY 1011238 1011541 -23701538 - AluY SINE Alu -6 305 1 6519 199 31 3 chrY 1011541 1012368 -23700711 + L1PA14 LINE L1 6062 6950 -649 324 0 0 0 chrY 1012368 1012404 -23700675 + (TAA)n Simple_repeat Simple_repeat 1 36 0 6519 199 31 3 chrY 1012404 1013072 -23700007 + L1PA14 LINE L1 6950 7598 -1 33 0 0 0 chrY 1013862 1013895 -23699184 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chrY 1014143 1014164 -23698915 + AT_rich Low_complexity Low_complexity 1 21 0 2322 65 0 32 chrY 1014419 1014729 -23698350 - AluY SINE Alu -11 300 1 444 303 12 37 chrY 1015614 1015855 -23697224 + L1MCb LINE L1 41 275 -5770 1684 220 39 21 chrY 1015951 1016622 -23696457 + L1M4 LINE L1 4880 5566 -618 1559 232 135 7 chrY 1016615 1017163 -23695916 + L1MC3 LINE L1 5376 5993 -2049 * 1089 194 90 19 chrY 1017176 1017444 -23695635 - MLT1C LTR MaLR -153 314 28 3154 213 56 18 chrY 1017469 1018315 -23694764 + L1MC3 LINE L1 6785 7661 -124 605 159 18 9 chrY 1018315 1018428 -23694651 - MER57A LTR ERV1 -289 114 1 1383 149 7 64 chrY 1018428 1018710 -23694369 - MER57A-int LTR ERV1 0 7537 7272 635 163 24 8 chrY 1018710 1018833 -23694246 - LTR54B LTR ERV1 -371 127 3 4725 91 12 0 chrY 1018833 1019483 -23693596 - MER57A-int LTR ERV1 -391 7146 6489 4913 88 9 54 chrY 1019494 1019877 -23693202 + L1PB1 LINE L1 5397 5796 -355 210 105 0 0 chrY 1019877 1019915 -23693164 + (TTTA)n Simple_repeat Simple_repeat 1 38 0 4913 88 9 54 chrY 1019915 1020135 -23692944 + L1PB1 LINE L1 5796 5958 -193 2411 77 0 0 chrY 1020135 1020432 -23692647 + AluY SINE Alu 1 297 -14 4913 88 9 54 chrY 1020432 1020618 -23692461 + L1PB1 LINE L1 5958 6151 0 14244 104 26 19 chrY 1020631 1022487 -23690592 - MER57A-int LTR ERV1 -1423 6114 4272 180 0 0 0 chrY 1022487 1022507 -23690572 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1814 147 0 0 chrY 1022514 1022779 -23690300 - AluSx SINE Alu -37 275 11 14244 104 26 19 chrY 1022779 1023122 -23689957 - MER57A-int LTR ERV1 -3270 4267 3892 6642 138 24 16 chrY 1023124 1024222 -23688857 - MER57A-int LTR ERV1 -3761 2185 1079 1707 142 4 11 chrY 1024208 1024468 -23688611 - MER57A-int LTR ERV1 -5328 618 361 * 5273 139 7 12 chrY 1024461 1025269 -23687810 - MER57A-int LTR ERV1 -6731 806 3 2433 145 10 2 chrY 1025271 1025671 -23687408 - MER57A LTR ERV1 0 403 1 23 33 0 0 chrY 1026376 1026406 -23686673 + AT_rich Low_complexity Low_complexity 1 30 0 3660 115 13 0 chrY 1026544 1027091 -23685988 + MER41A LTR ERV1 1 554 0 1199 191 0 4 chrY 1027138 1027368 -23685711 + L1PB4 LINE L1 5928 6156 0 5951 55 1 18 chrY 1027916 1028695 -23684384 + MER4E LTR ERV1 1 766 0 21 0 0 0 chrY 1029087 1029108 -23683971 + AT_rich Low_complexity Low_complexity 1 21 0 22 80 0 0 chrY 1029383 1029433 -23683646 + AT_rich Low_complexity Low_complexity 1 50 0 180 259 0 19 chrY 1030455 1030509 -23682570 + L2 LINE L2 1968 2020 -1294 825 332 82 47 chrY 1030646 1030707 -23682372 + L2 LINE L2 2284 2341 -972 327 25 0 0 chrY 1030707 1030747 -23682332 + (TG)n Simple_repeat Simple_repeat 1 40 0 825 332 82 47 chrY 1030747 1030959 -23682120 + L2 LINE L2 2341 2544 -769 2059 79 3 20 chrY 1030959 1031262 -23681817 + L1MA1 LINE L1 6004 6301 -1 825 332 82 47 chrY 1031262 1031749 -23681330 + L2 LINE L2 2544 3068 -245 1797 185 3 0 chrY 1035097 1035525 -23677554 + AluJo SINE Alu 8 436 0 518 176 107 23 chrY 1035612 1035743 -23677336 + L1MC5 LINE L1 7305 7446 -515 1360 176 0 0 chrY 1035751 1035972 -23677107 - AluJo SINE Alu -8 304 84 473 191 38 118 chrY 1035999 1036107 -23676972 + L1MC5 LINE L1 7478 7593 -368 288 111 0 0 chrY 1036107 1036152 -23676927 + (TG)n Simple_repeat Simple_repeat 1 45 0 473 191 38 118 chrY 1036152 1036174 -23676905 + L1MC5 LINE L1 7593 7615 -346 2515 71 0 3 chrY 1036174 1036482 -23676597 + AluY SINE Alu 1 307 -4 473 191 38 118 chrY 1036482 1036638 -23676441 + L1MC5 LINE L1 7615 7742 -219 * 1275 231 39 3 chrY 1036610 1036918 -23676161 - L1MD2 LINE L1 -13 6346 6028 747 242 7 0 chrY 1036940 1037093 -23675986 - AluJb SINE Alu -22 290 137 2746 232 40 11 chrY 1037096 1037824 -23675255 - L1MD2 LINE L1 -323 6036 5288 * 14720 112 7 16 chrY 1037810 1037825 -23675254 + L1P3 LINE L1 407 421 -6040 15498 95 4 5 chrY 1037825 1040829 -23672250 - L1PA7 LINE L1 -4 6150 3148 14720 112 7 16 chrY 1040829 1043583 -23669496 + L1P3 LINE L1 421 3158 -3303 2199 95 7 0 chrY 1043583 1043866 -23669213 + AluY SINE Alu 1 285 -26 14720 112 7 16 chrY 1043866 1044094 -23668985 + L1P3 LINE L1 3158 3387 -3074 524 167 28 9 chrY 1044089 1044197 -23668882 - L1MD2 LINE L1 -850 5296 5187 * 352 128 291 12 chrY 1044271 1044357 -23668722 + MER34 LTR ERV1 6 115 -427 698 255 129 32 chrY 1044360 1044722 -23668357 + MER39 LTR ERV1 221 665 -42 2295 282 137 26 chrY 1044756 1046186 -23666893 - L1MD2 LINE L1 -1036 5110 3522 1100 141 15 201 chrY 1046174 1046383 -23666696 - L1MDb LINE L1 -4997 1412 1336 * 1494 210 15 4 chrY 1046383 1046650 -23666429 - AluJb SINE Alu -38 274 5 1100 141 15 201 chrY 1046650 1046907 -23666172 - L1MDb LINE L1 -5073 1336 1033 252 204 0 0 chrY 1046922 1046971 -23666108 - MLT2B3 LTR ERVL 0 520 472 1900 211 79 7 chrY 1047111 1047524 -23665555 - MLT2B3 LTR ERVL -39 508 77 996 161 92 23 chrY 1047622 1047685 -23665394 - Ricksha DNA DNA -1630 416 339 1430 161 41 7 chrY 1047685 1048167 -23664912 - ERVL-B3 LTR ERVL 0 5764 5233 980 145 0 11 chrY 1048172 1048351 -23664728 + (TTTC)n Simple_repeat Simple_repeat 4 180 0 525 32 0 0 chrY 1048424 1048487 -23664592 + (TTCC)n Simple_repeat Simple_repeat 2 64 0 195 156 0 47 chrY 1048522 1048586 -23664493 + T-rich Low_complexity Low_complexity 4 64 0 * 534 70 0 0 chrY 1048572 1048643 -23664436 + (TTCC)n Simple_repeat Simple_repeat 2 72 0 779 101 0 23 chrY 1048715 1048844 -23664235 + (TTTCC)n Simple_repeat Simple_repeat 4 129 0 1652 193 3 31 chrY 1048844 1049206 -23663873 - AluJo SINE Alu 0 353 1 7875 175 16 5 chrY 1049206 1050538 -23662541 - ERVL-B3 LTR ERVL -522 5242 3896 338 217 0 0 chrY 1050597 1050666 -23662413 - MLT2B3 LTR ERVL -483 71 3 916 273 8 0 chrY 1050668 1050917 -23662162 - L1MDb LINE L1 -5387 1022 772 357 233 143 8 chrY 1051069 1051202 -23661877 + L1MC5 LINE L1 7751 7901 -60 1261 281 113 10 chrY 1051710 1052205 -23660874 + MLT1H LTR MaLR 1 546 -3 23 0 0 0 chrY 1052360 1052383 -23660696 + AT_rich Low_complexity Low_complexity 1 23 0 226 197 16 16 chrY 1052426 1052487 -23660592 - MLT1E2 LTR MaLR -2 624 564 975 233 79 98 chrY 1052487 1052894 -23660185 - MLT1E2 LTR MaLR -106 399 1 423 337 28 6 chrY 1052901 1053079 -23660000 - MIR SINE MIR -6 256 75 7847 208 40 19 chrY 1055333 1057430 -23655649 + L1MA9 LINE L1 2373 4514 -1632 4221 140 71 8 chrY 1057436 1058164 -23654915 - Tigger1 DNA MER2_type -1644 774 1 553 200 114 11 chrY 1058164 1058220 -23654859 + L1MDa LINE L1 1564 1613 -4927 5744 135 32 17 chrY 1058220 1059174 -23653905 + LTR5 LTR ERVK 1 969 0 553 200 114 11 chrY 1059174 1059292 -23653787 + L1MDa LINE L1 1613 1756 -4784 2953 211 21 6 chrY 1059560 1060514 -23652565 + L1MA9 LINE L1 4670 5642 -649 2981 106 31 18 chrY 1060514 1060968 -23652111 - LTR46 LTR ERV1 0 460 1 2136 124 3 3 chrY 1060968 1061275 -23651804 - LTR46-int LTR ERV1 0 6985 6679 18013 120 14 8 chrY 1061597 1064316 -23648763 - LTR46-int LTR ERV1 -312 6673 3938 * 18789 158 20 30 chrY 1064312 1067416 -23645663 - LTR46-int LTR ERV1 -3195 3790 659 3579 117 11 16 chrY 1067608 1068153 -23644926 - LTR46-int LTR ERV1 -6443 542 1 2962 99 50 14 chrY 1068153 1068597 -23644482 - LTR46 LTR ERV1 0 460 1 1008 136 0 0 chrY 1068598 1068753 -23644326 + L1MA9 LINE L1 5639 5793 -498 590 171 19 0 chrY 1068792 1068897 -23644182 - L1MA9 LINE L1 -216 6096 5990 2784 152 28 2 chrY 1068903 1069409 -23643670 + L1MA9 LINE L1 5794 6312 0 185 139 23 0 chrY 1069888 1069931 -23643148 + (TA)n Simple_repeat Simple_repeat 1 44 0 651 338 51 0 chrY 1069991 1070225 -23642854 + MIR SINE MIR 17 262 0 313 322 0 0 chrY 1070353 1070443 -23642636 - L1MC4 LINE L1 -1339 6703 6614 666 263 0 0 chrY 1070455 1070764 -23642315 + (TA)n Simple_repeat Simple_repeat 1 309 0 239 255 0 43 chrY 1070767 1070861 -23642218 - L1MC4 LINE L1 -1339 6703 6614 339 213 0 0 chrY 1070861 1070936 -23642143 + (CATATA)n Simple_repeat Simple_repeat 2 76 0 301 194 16 0 chrY 1070938 1071000 -23642079 - L1MCa LINE L1 -4358 2068 2006 258 192 0 0 chrY 1071001 1071053 -23642026 + (CA)n Simple_repeat Simple_repeat 2 53 0 324 322 0 0 chrY 1071053 1071143 -23641936 + L1MC4 LINE L1 6614 6703 -1339 336 311 0 0 chrY 1071153 1071243 -23641836 + L1MC4 LINE L1 6614 6703 -1339 * 338 237 0 43 chrY 1071209 1071302 -23641777 - L1MC4 LINE L1 -1339 6703 6615 313 322 0 0 chrY 1071261 1071351 -23641728 + L1MC4 LINE L1 6614 6703 -1339 * 180 125 0 0 chrY 1071351 1071383 -23641696 + (TA)n Simple_repeat Simple_repeat 2 33 0 1773 213 28 8 chrY 1071422 1071816 -23641263 - MER74A LTR ERVL -27 531 130 1105 233 77 34 chrY 1072580 1072958 -23640121 + MER110A LTR ERV1 22 415 -53 810 254 66 39 chrY 1072967 1073045 -23640034 + MER76 LTR ERV 244 318 -370 3145 192 68 0 chrY 1073045 1073664 -23639415 + MER67B LTR ERV1 1 661 0 810 254 66 39 chrY 1073664 1074001 -23639078 + MER76 LTR ERV 318 686 -2 431 301 57 16 chrY 1074069 1074494 -23638585 - L1ME LINE L1 -471 5699 5255 2015 175 23 17 chrY 1074761 1075222 -23637857 + MLT2A2 LTR ERVL 1 364 -89 213 250 133 0 chrY 1075335 1075395 -23637684 + L2 LINE L2 3246 3313 0 388 285 81 8 chrY 1075934 1076057 -23637022 - MIR3 SINE MIR -7 201 70 1595 215 0 6 chrY 1079587 1079899 -23633180 - AluJb SINE Alu -2 310 1 1317 66 33 0 chrY 1079936 1080119 -23632960 + LTR19A LTR ERV1 1 189 -297 4340 64 9 0 chrY 1080119 1080664 -23632415 + HERVFH19I LTR ERV1 2167 2716 -5003 643 249 117 10 chrY 1081158 1081363 -23631716 + AluJo SINE Alu 84 310 -2 236 340 78 0 chrY 1082399 1082502 -23630577 + L2 LINE L2 2543 2653 -661 369 291 99 35 chrY 1082526 1082667 -23630412 + L2 LINE L2 3163 3312 -1 22 99 0 0 chrY 1082924 1082995 -23630084 + AT_rich Low_complexity Low_complexity 1 71 0 1234 188 0 9 chrY 1083169 1083392 -23629687 - AluJb SINE Alu -91 221 1 189 74 0 0 chrY 1085323 1085350 -23627729 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 3740 258 114 10 chrY 1085359 1087406 -23625673 + L1PBa LINE L1 6 1643 -5220 387 0 0 0 chrY 1087406 1087449 -23625630 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 4870 179 85 19 chrY 1087521 1088957 -23624122 + L1PB3 LINE L1 640 1981 -4222 1884 154 39 22 chrY 1088957 1089321 -23623758 - THE1C LTR MaLR -3 372 3 8658 144 70 8 chrY 1089323 1090810 -23622269 - THE1C-int LTR MaLR 0 1580 2 1628 198 16 26 chrY 1090811 1091190 -23621889 - THE1C LTR MaLR 0 375 1 4870 179 85 19 chrY 1091190 1091547 -23621532 + L1PB3 LINE L1 1980 2547 -3656 4310 284 91 5 chrY 1091561 1092717 -23620362 + L1PA13 LINE L1 1 1255 -5532 18429 190 44 7 chrY 1092728 1097977 -23615102 + L1PA13 LINE L1 1399 6810 -4 10900 201 32 14 chrY 1097969 1098070 -23615009 + L1PB3 LINE L1 2540 2638 -3573 * 207 100 0 0 chrY 1098070 1098100 -23614979 + (CAA)n Simple_repeat Simple_repeat 1 30 0 10900 201 32 14 chrY 1098100 1098869 -23614210 + L1PB3 LINE L1 2638 3392 -2819 2408 128 17 6 chrY 1098869 1099229 -23613850 - THE1B LTR MaLR 0 364 1 10456 114 3 34 chrY 1099230 1100859 -23612220 - THE1B-int LTR MaLR -1 1579 1 2114 137 28 28 chrY 1100859 1101223 -23611856 - THE1B LTR MaLR 0 364 1 10900 201 32 14 chrY 1101223 1103951 -23609128 + L1PB3 LINE L1 3391 6211 0 23 33 0 0 chrY 1103961 1103991 -23609088 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chrY 1104934 1104955 -23608124 + AT_rich Low_complexity Low_complexity 1 21 0 682 224 37 5 chrY 1105043 1105206 -23607873 - MER45A DNA AcHobo 0 178 1 21 36 0 0 chrY 1105245 1105273 -23607806 + AT_rich Low_complexity Low_complexity 1 28 0 2410 134 0 19 chrY 1105315 1105681 -23607398 - THE1B LTR MaLR -5 359 1 435 193 0 0 chrY 1105681 1105764 -23607315 - L1MD1 LINE L1 -79 6163 6081 2305 244 38 31 chrY 1105775 1105994 -23607085 - L1MD2 LINE L1 -226 6133 5917 1066 227 129 9 chrY 1105994 1106320 -23606759 - MLT1A1 LTR MaLR 0 365 1 2305 244 38 31 chrY 1106320 1106735 -23606344 - L1MD2 LINE L1 -442 5917 5495 202 286 61 113 chrY 1107123 1107336 -23605743 + L2 LINE L2 2538 2739 -575 214 333 105 35 chrY 1107686 1107800 -23605279 + L2 LINE L2 3143 3264 -8 22 0 0 0 chrY 1107853 1107875 -23605204 + AT_rich Low_complexity Low_complexity 1 22 0 495 331 65 25 chrY 1109238 1109594 -23603485 + L1ME LINE L1 5403 5772 -349 297 0 0 0 chrY 1110566 1110599 -23602480 + (CA)n Simple_repeat Simple_repeat 2 34 0 1477 236 64 0 chrY 1110603 1110946 -23602133 + MLT1A1 LTR MaLR 1 365 0 720 162 0 22 chrY 1111761 1111897 -23601182 - FLAM_C SINE Alu 0 133 1 25 31 0 0 chrY 1112218 1112250 -23600829 + AT_rich Low_complexity Low_complexity 1 32 0 25 31 0 0 chrY 1112520 1112552 -23600527 + AT_rich Low_complexity Low_complexity 1 32 0 460 204 7 44 chrY 1112765 1112902 -23600177 + L1MC5 LINE L1 7801 7932 -29 310 189 57 132 chrY 1112922 1113081 -23599998 + L1ME2 LINE L1 5176 5322 -824 313 227 55 86 chrY 1113210 1113411 -23599668 + L1ME2 LINE L1 5674 5884 -280 184 257 14 54 chrY 1113880 1113954 -23599125 - MER5A DNA MER1_type -86 103 33 49 32 0 0 chrY 1114444 1114507 -23598572 + AT_rich Low_complexity Low_complexity 1 63 0 228 258 0 0 chrY 1114509 1114571 -23598508 + L1MC4 LINE L1 6642 6703 -1339 246 233 50 0 chrY 1114572 1114632 -23598447 + L1MC4 LINE L1 6653 6715 -1327 1765 144 37 0 chrY 1114736 1115006 -23598073 + AluSx SINE Alu 1 280 -32 836 185 60 0 chrY 1115036 1115187 -23597892 + FRAM SINE Alu 1 157 -19 1619 179 103 58 chrY 1115455 1115901 -23597178 + MER31B LTR ERV1 1 466 0 426 301 7 29 chrY 1116382 1116518 -23596561 + L2 LINE L2 3178 3310 -3 4890 154 32 35 chrY 1117004 1118184 -23594895 + L1PB4 LINE L1 4975 6156 0 438 250 11 109 chrY 1118776 1119052 -23594027 - L1MC5 LINE L1 -51 7910 7662 991 101 0 0 chrY 1119997 1120126 -23592953 - AluSq/x SINE Alu -184 129 1 2182 203 4 62 chrY 1120329 1120861 -23592218 + MLT1D LTR MaLR 3 503 -2 529 279 33 70 chrY 1122504 1122776 -23590303 - L1ME2 LINE L1 -16 6148 5887 576 237 0 0 chrY 1122795 1122892 -23590187 - MER2 DNA MER2_type -248 97 1 2246 273 82 26 chrY 1122892 1123772 -23589307 - L1ME2 LINE L1 -262 5902 5073 2098 129 0 0 chrY 1123772 1124067 -23589012 + AluSg SINE Alu 1 295 -15 2246 273 82 26 chrY 1124067 1125200 -23587879 - L1ME2 LINE L1 -1091 5073 3775 957 177 64 0 chrY 1125250 1125453 -23587626 - L1MC1 LINE L1 -5 6328 6113 1162 235 40 87 chrY 1125651 1126021 -23587058 + LTR49-int LTR ERV1 2068 2420 -3911 3666 192 8 39 chrY 1126029 1126765 -23586314 - MER50 LTR ERV1 -21 713 1 6446 171 15 13 chrY 1126765 1127909 -23585170 - MER50-int LTR ERV1 -8 7197 3899 18859 246 52 53 chrY 1128833 1135548 -23577531 - MER50-int LTR ERV1 -933 6158 1 1958 184 0 22 chrY 1135550 1135915 -23577164 - MER50 LTR ERV1 -24 710 354 401 105 0 0 chrY 1135912 1135969 -23577110 + AluSg/x SINE Alu 181 237 -65 * 1412 81 34 64 chrY 1135970 1136310 -23576769 + MER4A-int LTR ERV1 764 1149 -5609 372 119 0 0 chrY 1136310 1136369 -23576710 + (TG)n Simple_repeat Simple_repeat 2 60 0 4164 104 48 13 chrY 1136380 1137090 -23575989 + MER4A-int LTR ERV1 1761 2495 -4103 542 183 122 0 chrY 1137090 1137205 -23575874 - LTR8 LTR ERV1 -434 257 129 3008 125 79 21 chrY 1137205 1137910 -23575169 + MER4A-int LTR ERV1 2840 3677 -2921 14942 117 51 10 chrY 1137913 1140402 -23572677 + MER4A-int LTR ERV1 3837 6428 -170 2187 115 7 0 chrY 1140685 1140989 -23572090 - AluSq SINE Alu -2 311 6 1072 160 11 5 chrY 1142552 1142740 -23570339 + MER4A-int LTR ERV1 6405 6593 -5 480 177 21 10 chrY 1142751 1142847 -23570232 + MER4A LTR ERV1 1 97 -567 * 1591 176 3 27 chrY 1142844 1143202 -23569877 + MER4A LTR ERV1 257 664 0 897 212 42 19 chrY 1143202 1143534 -23569545 - L1M1 LINE L1 -2704 4861 2678 1112 300 61 28 chrY 1143602 1144221 -23568858 - L1MEc LINE L1 -3151 3064 2408 2045 128 3 0 chrY 1144221 1144511 -23568568 - AluY SINE Alu -20 291 1 1112 300 61 28 chrY 1144511 1144728 -23568351 - L1MEc LINE L1 -3807 2408 2200 861 292 95 23 chrY 1144898 1145508 -23567571 - L1MEc LINE L1 -4358 2038 1385 508 285 55 80 chrY 1145705 1146017 -23567062 - L1MEc LINE L1 -5090 1115 812 313 365 42 23 chrY 1146313 1146527 -23566552 - MIR SINE MIR -11 251 34 22 0 0 0 chrY 1147151 1147173 -23565906 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chrY 1148320 1148341 -23564738 + AT_rich Low_complexity Low_complexity 1 21 0 696 293 106 24 chrY 1148397 1148943 -23564136 + HAL1 LINE L1 659 1249 -1258 3432 154 41 0 chrY 1149080 1149666 -23563413 - MER4B LTR ERV1 0 610 1 1615 160 15 15 chrY 1149666 1149934 -23563145 - MER4B-int LTR ERV1 0 6758 6491 * 6934 151 31 67 chrY 1149926 1151436 -23561643 - MER4B-int LTR ERV1 -181 6577 5122 3769 195 7 28 chrY 1151436 1152180 -23560899 - MER50 LTR ERV1 -6 728 1 1660 142 11 36 chrY 1152180 1152659 -23560420 - MER50-int LTR ERV1 -8 7197 4041 626 137 0 0 chrY 1152670 1152765 -23560314 - MER50-int LTR ERV1 -3212 3546 3452 7373 168 43 51 chrY 1152772 1153690 -23559389 - MER50-int LTR ERV1 -3431 3327 2403 2207 112 0 0 chrY 1153690 1153984 -23559095 + AluY SINE Alu 1 294 -17 7373 168 43 51 chrY 1153984 1154064 -23559015 - MER50-int LTR ERV1 -4355 2403 2324 2167 120 0 0 chrY 1154064 1154365 -23558714 - AluSg SINE Alu -9 301 1 7373 168 43 51 chrY 1154365 1154889 -23558190 - MER50-int LTR ERV1 -4434 2324 1797 2137 124 0 3 chrY 1154889 1155195 -23557884 - AluSg SINE Alu -5 305 1 7373 168 43 51 chrY 1155195 1156739 -23556340 - MER50-int LTR ERV1 -4961 1797 180 3307 146 48 2 chrY 1156827 1157368 -23555711 - MER4B LTR ERV1 0 610 45 689 134 23 227 chrY 1157368 1157609 -23555470 - MLT2A2 LTR ERVL 0 444 287 281 296 162 51 chrY 1157636 1158278 -23554801 + HAL1 LINE L1 1792 2504 -3 507 279 92 85 chrY 1158866 1159149 -23553930 + L2 LINE L2 3029 3313 0 184 264 75 0 chrY 1159214 1159267 -23553812 + MIR SINE MIR 85 141 -121 1567 223 76 49 chrY 1159655 1159880 -23553199 + MLT1D LTR MaLR 4 222 -283 186 71 0 0 chrY 1159880 1159908 -23553171 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1567 223 76 49 chrY 1159908 1160171 -23552908 + MLT1D LTR MaLR 222 505 0 25 0 0 0 chrY 1160546 1160571 -23552508 + AT_rich Low_complexity Low_complexity 1 25 0 216 388 72 26 chrY 1160807 1161196 -23551883 - L2 LINE L2 -642 2672 2266 1635 178 165 8 chrY 1161353 1161723 -23551356 - MSTA LTR MaLR 0 428 1 8323 161 8 56 chrY 1161723 1162658 -23550421 - MSTA-int LTR MaLR 0 1580 755 2668 29 0 3 chrY 1162658 1162970 -23550109 + AluY SINE Alu 1 311 0 8323 161 8 56 chrY 1162970 1163690 -23549389 - MSTA-int LTR MaLR -825 755 3 1774 168 146 8 chrY 1163693 1164069 -23549010 - MSTA LTR MaLR 0 428 1 1337 288 65 17 chrY 1164069 1164549 -23548530 - LTR40a LTR ERVL -16 503 1 912 286 73 21 chrY 1164714 1165354 -23547725 - L1ME LINE L1 -519 5643 4961 1544 292 69 51 chrY 1165496 1167216 -23545863 - L1ME LINE L1 -1987 4159 2409 1308 266 58 76 chrY 1167220 1167942 -23545137 + L1ME3A LINE L1 5462 6170 0 26 0 0 0 chrY 1168376 1168402 -23544677 + AT_rich Low_complexity Low_complexity 1 26 0 3178 141 41 23 chrY 1168497 1169059 -23544020 + MER4B LTR ERV1 3 574 -36 22 70 0 0 chrY 1169669 1169712 -23543367 + AT_rich Low_complexity Low_complexity 1 43 0 250 381 15 8 chrY 1169775 1169909 -23543170 - MIR SINE MIR -47 215 81 2458 138 58 22 chrY 1170144 1170593 -23542486 - MER4C LTR ERV1 0 465 1 2411 75 0 3 chrY 1170904 1171212 -23541867 + AluY SINE Alu 1 307 -4 31 76 0 0 chrY 1171365 1171431 -23541648 + AT_rich Low_complexity Low_complexity 1 66 0 23 33 0 0 chrY 1171902 1171932 -23541147 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chrY 1172175 1172197 -23540882 + AT_rich Low_complexity Low_complexity 1 22 0 31 0 0 0 chrY 1172665 1172696 -23540383 + AT_rich Low_complexity Low_complexity 1 31 0 23 54 0 0 chrY 1172846 1172883 -23540196 + AT_rich Low_complexity Low_complexity 1 37 0 1458 277 123 11 chrY 1173095 1173658 -23539421 - MLT1E2 LTR MaLR 0 626 1 1877 171 3 0 chrY 1174090 1174399 -23538680 + AluSx SINE Alu 1 310 -2 1363 235 17 32 chrY 1174769 1174918 -23538161 + L1MB3 LINE L1 3392 3542 -2604 2014 152 91 15 chrY 1174918 1175314 -23537765 - MSTA LTR MaLR 0 428 3 7950 163 34 42 chrY 1175316 1176396 -23536683 - MSTA-int LTR MaLR 0 1580 516 213 39 0 0 chrY 1176396 1176422 -23536657 + (TTTTC)n Simple_repeat Simple_repeat 5 30 0 7950 163 34 42 chrY 1176422 1176932 -23536147 - MSTA-int LTR MaLR -1064 516 3 1812 149 79 82 chrY 1176934 1177172 -23535907 - MSTA LTR MaLR 0 428 190 2129 101 50 3 chrY 1177172 1177469 -23535610 - AluY SINE Alu 0 311 1 1812 149 79 82 chrY 1177469 1177659 -23535420 - MSTA LTR MaLR -238 190 1 1363 235 17 32 chrY 1177659 1177967 -23535112 + L1MB3 LINE L1 3544 3848 -2298 8487 216 15 2 chrY 1177977 1179533 -23533546 + L1PA13 LINE L1 9 1585 -5996 3616 210 15 17 chrY 1179536 1180673 -23532406 + L1PA13 LINE L1 2405 3560 -4024 * 9882 174 18 25 chrY 1180661 1183629 -23529450 + L1PA13 LINE L1 4648 7595 -6 4135 230 52 30 chrY 1183655 1183873 -23529206 + L1MB3 LINE L1 3876 4088 -2095 1718 225 10 20 chrY 1183873 1184273 -23528806 - MSTD LTR MaLR 0 396 1 4135 230 52 30 chrY 1184273 1184465 -23528614 + L1MB3 LINE L1 4088 4274 -1909 234 0 0 0 chrY 1184465 1184491 -23528588 + (CA)n Simple_repeat Simple_repeat 2 27 0 4135 230 52 30 chrY 1184491 1185455 -23527624 + L1MB3 LINE L1 4274 5216 -967 1073 248 39 19 chrY 1185455 1185818 -23527261 - MLT1A2 LTR MaLR -4 370 1 4135 230 52 30 chrY 1185818 1186714 -23526365 + L1MB3 LINE L1 5216 6183 0 180 329 13 13 chrY 1187822 1187898 -23525181 + MIR SINE MIR 187 262 0 572 383 82 21 chrY 1188351 1189180 -23523899 - L2 LINE L2 -213 3059 2180 394 299 57 53 chrY 1189278 1189579 -23523500 + L1M4 LINE L1 3684 3985 -2161 614 213 164 7 chrY 1189611 1189818 -23523261 - MER66A LTR ERV1 -257 341 97 1512 179 51 0 chrY 1189886 1190159 -23522920 - MER66A-int LTR ERV1 0 6676 6390 324 172 16 0 chrY 1190148 1190212 -23522867 - MER66A-int LTR ERV1 -1735 4941 4877 * 7545 196 107 86 chrY 1190214 1192732 -23520347 - MER66A-int LTR ERV1 -1758 4918 2348 13155 143 16 11 chrY 1192762 1195852 -23517227 - L1PA10 LINE L1 -3 6165 3044 10099 193 49 29 chrY 1195874 1197992 -23515087 - MER66A-int LTR ERV1 -4516 2160 1 1334 202 48 94 chrY 1197992 1198426 -23514653 - MER66A LTR ERV1 0 478 97 360 287 33 16 chrY 1198528 1198650 -23514429 + L1MC4 LINE L1 6580 6703 -1339 216 278 0 14 chrY 1198650 1198686 -23514393 + (TA)n Simple_repeat Simple_repeat 1 36 -35 1249 209 62 38 chrY 1198686 1199025 -23514054 + MER7A DNA MER2_type 1 345 -1 216 278 0 14 chrY 1199025 1199060 -23514019 + (TA)n Simple_repeat Simple_repeat 36 71 0 1179 176 0 39 chrY 1199140 1199373 -23513706 + Tigger5 DNA MER2_type 2085 2308 -15 192 40 0 0 chrY 1199384 1199409 -23513670 + (TC)n Simple_repeat Simple_repeat 2 26 0 247 276 0 0 chrY 1199410 1199468 -23513611 + (TATG)n Simple_repeat Simple_repeat 3 60 0 1951 119 0 17 chrY 1199716 1200054 -23513025 + AluY SINE Alu 1 311 0 29 0 0 0 chrY 1200092 1200121 -23512958 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chrY 1200350 1200374 -23512705 + AT_rich Low_complexity Low_complexity 1 24 0 651 259 95 69 chrY 1200482 1201176 -23511903 + L1MC/D LINE L1 3997 4708 -1438 459 215 117 78 chrY 1201220 1201425 -23511654 - L2 LINE L2 0 3313 3101 321 245 1 95 chrY 1201761 1201884 -23511195 + L1MC/D LINE L1 5476 5589 -540 591 211 37 0 chrY 1202064 1202173 -23510906 - FLAM_A SINE Alu -18 115 3 2827 297 128 38 chrY 1202358 1203909 -23509170 + L2 LINE L2 1171 2861 -453 529 290 26 59 chrY 1203968 1204240 -23508839 + L2 LINE L2 3051 3313 0 3464 215 96 17 chrY 1205385 1205745 -23507334 - L1MB7 LINE L1 -8 6176 5846 1788 198 40 0 chrY 1205745 1206094 -23506985 + MLT1A1 LTR MaLR 1 363 -2 3464 215 96 17 chrY 1206094 1206814 -23506265 - L1MB7 LINE L1 -338 5846 5028 435 19 0 0 chrY 1207822 1207874 -23505205 + (CA)n Simple_repeat Simple_repeat 1 52 0 378 315 129 18 chrY 1208296 1208636 -23504443 - L1ME4a LINE L1 -14 6107 5730 21 57 0 0 chrY 1209404 1209439 -23503640 + AT_rich Low_complexity Low_complexity 1 35 0 2201 90 0 0 chrY 1211746 1212034 -23501045 - AluY SINE Alu -23 288 1 1362 207 82 4 chrY 1212083 1212363 -23500716 + AluJb SINE Alu 1 302 -10 30 27 0 0 chrY 1212363 1212400 -23500679 + AT_rich Low_complexity Low_complexity 1 37 0 615 12 0 0 chrY 1212428 1212508 -23500571 + AluYa5/8 SINE Alu 231 310 -1 22 56 0 0 chrY 1213862 1213898 -23499181 + AT_rich Low_complexity Low_complexity 1 36 0 1590 261 76 32 chrY 1214199 1214767 -23498312 + MLT1E LTR MaLR 1 593 0 13461 170 25 47 chrY 1214923 1215127 -23497952 - L1PA13 LINE L1 0 6163 5956 2072 128 0 0 chrY 1215127 1215416 -23497663 - AluSg SINE Alu -21 289 1 13461 170 25 47 chrY 1215416 1216884 -23496195 - L1PA13 LINE L1 -207 5956 4458 2534 33 13 0 chrY 1216884 1217186 -23495893 - AluY SINE Alu 0 311 6 13461 170 25 47 chrY 1217186 1217280 -23495799 - L1PA13 LINE L1 -1705 4458 4363 2296 96 0 6 chrY 1217280 1217592 -23495487 - AluSx SINE Alu -2 310 1 13461 170 25 47 chrY 1217592 1218867 -23494212 - L1PA13 LINE L1 -1800 4363 3062 1832 180 0 0 chrY 1218867 1219178 -23493901 - AluSx SINE Alu -1 311 1 13461 170 25 47 chrY 1219178 1219198 -23493881 - L1PA13 LINE L1 -3101 3062 3043 1773 182 3 0 chrY 1219198 1219506 -23493573 - AluSx SINE Alu -3 309 1 13461 170 25 47 chrY 1219506 1220343 -23492736 - L1PA13 LINE L1 -3120 3043 2341 195 114 0 0 chrY 1220447 1220482 -23492597 + (A)n Simple_repeat Simple_repeat 1 35 0 774 297 36 5 chrY 1221306 1221528 -23491551 + MER69 DNA AcHobo 304 532 -694 449 200 30 20 chrY 1221534 1221634 -23491445 + MER69 DNA AcHobo 801 901 -1625 1382 207 121 12 chrY 1221644 1222141 -23490938 + MER69 DNA AcHobo 1708 2258 -268 4807 181 16 12 chrY 1222190 1222620 -23490459 - L1PA16 LINE L1 -8 6158 5731 5869 61 30 13 chrY 1222620 1223387 -23489692 - LTR17 LTR ERV1 0 780 1 4807 181 16 12 chrY 1223387 1223915 -23489164 - L1PA16 LINE L1 -435 5731 5199 421 217 19 83 chrY 1223915 1224072 -23489007 + MER69 DNA AcHobo 2371 2517 -9 194 366 78 35 chrY 1224093 1224235 -23488844 + MIR3 SINE MIR 33 180 -28 2192 188 49 79 chrY 1224241 1224897 -23488182 + MER92B LTR ERV1 1 636 0 395 289 157 38 chrY 1226274 1226433 -23486646 + MER5A DNA MER1_type 11 188 -1 1049 302 132 21 chrY 1226550 1226732 -23486347 - L2 LINE L2 -4 3309 3149 1549 219 7 47 chrY 1226732 1227138 -23485941 + MLT1B LTR MaLR 1 390 0 1049 302 132 21 chrY 1227138 1227567 -23485512 - L2 LINE L2 -164 3149 2621 472 110 14 0 chrY 1227713 1227786 -23485293 - MADE1 DNA Mariner -1 79 6 310 274 176 19 chrY 1227806 1228336 -23484743 - L1M4 LINE L1 -901 5245 4633 2356 84 0 7 chrY 1228338 1228648 -23484431 + AluY SINE Alu 1 308 -3 1609 142 76 44 chrY 1228698 1229042 -23484037 - THE1C LTR MaLR -20 355 1 345 304 104 55 chrY 1229337 1229538 -23483541 - MIR SINE MIR -3 259 49 21 36 0 0 chrY 1229647 1229675 -23483404 + AT_rich Low_complexity Low_complexity 1 28 0 468 0 0 0 chrY 1230709 1230761 -23482318 + (TA)n Simple_repeat Simple_repeat 2 53 0 1442 238 85 25 chrY 1230808 1231251 -23481828 - MLT2B1 LTR ERVL -40 461 4 16474 190 32 20 chrY 1231258 1234463 -23478616 - ERVL-B1 LTR ERVL -11 5753 2510 953 238 32 69 chrY 1234467 1234744 -23478335 - MLT2B1 LTR ERVL -253 267 1 408 273 187 16 chrY 1234940 1235127 -23477952 - MIR SINE MIR -5 257 39 315 248 134 13 chrY 1235740 1235889 -23477190 - MER58C DNA MER1_type -1 214 48 25 75 0 0 chrY 1236312 1236365 -23476714 + AT_rich Low_complexity Low_complexity 1 53 0 671 119 0 0 chrY 1236484 1236585 -23476494 - LTR12 LTR ERV1 -133 581 481 378 224 42 0 chrY 1236586 1236692 -23476387 - LTR30 LTR ERV1 -79 677 544 660 218 8 77 chrY 1236692 1236926 -23476153 - LTR12 LTR ERV1 -444 270 53 235 269 0 0 chrY 1236926 1236978 -23476101 - LTR30 LTR ERV1 -670 52 1 22 56 0 0 chrY 1237540 1237576 -23475503 + AT_rich Low_complexity Low_complexity 1 36 0 200 238 0 0 chrY 1237605 1237647 -23475432 + (TAA)n Simple_repeat Simple_repeat 2 43 0 243 252 129 49 chrY 1237647 1237933 -23475146 + L1M4 LINE L1 2207 2515 -3631 335 342 97 51 chrY 1238016 1238253 -23474826 + L1M4 LINE L1 -260 4294967283 -6293 262 149 21 0 chrY 1238602 1238649 -23474430 + L1M4 LINE L1 619 666 -5718 2567 234 68 40 chrY 1238650 1238810 -23474269 + L1M4 LINE L1 777 931 -5372 198 0 0 0 chrY 1238810 1238832 -23474247 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 2567 234 68 40 chrY 1238832 1239627 -23473452 + L1M4 LINE L1 931 1786 -4517 1208 256 36 31 chrY 1239627 1239980 -23473099 - MSTD LTR MaLR 0 396 44 405 0 0 0 chrY 1239980 1240025 -23473054 + (CA)n Simple_repeat Simple_repeat 2 46 0 1208 256 36 31 chrY 1240025 1240038 -23473041 - MSTD LTR MaLR -352 44 33 4830 208 44 12 chrY 1240038 1241107 -23471972 + L1MC3 LINE L1 6573 7675 -110 2062 115 0 26 chrY 1241111 1241415 -23471664 + AluSg SINE Alu 1 296 -14 205 184 0 0 chrY 1241779 1241817 -23471262 + (CATA)n Simple_repeat Simple_repeat 2 39 0 24 53 0 0 chrY 1242033 1242071 -23471008 + AT_rich Low_complexity Low_complexity 1 38 0 704 108 0 0 chrY 1242078 1242180 -23470899 - LTR12 LTR ERV1 -132 582 481 310 293 10 0 chrY 1242181 1242280 -23470799 - LTR30 LTR ERV1 -79 643 544 649 168 153 31 chrY 1242283 1242479 -23470600 - LTR12 LTR ERV1 -440 274 55 960 148 6 22 chrY 1242480 1242662 -23470417 - LTR12 LTR ERV1 -483 231 53 232 250 0 0 chrY 1242662 1242714 -23470365 - LTR30 LTR ERV1 -670 52 1 192 77 0 0 chrY 1244439 1244465 -23468614 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 21 57 0 0 chrY 1244689 1244724 -23468355 + AT_rich Low_complexity Low_complexity 1 35 0 543 241 103 0 chrY 1244766 1244911 -23468168 - MLT1A1 LTR MaLR 0 624 465 2198 86 3 16 chrY 1245195 1245499 -23467580 + AluY SINE Alu 12 311 0 1039 156 28 104 chrY 1245499 1245749 -23467330 - LOR1b LTR ERV1 -203 258 41 32 43 0 0 chrY 1246081 1246127 -23466952 + AT_rich Low_complexity Low_complexity 1 46 0 224 283 0 0 chrY 1246296 1246349 -23466730 - MIR SINE MIR -187 75 23 2179 113 3 6 chrY 1246349 1246660 -23466419 - AluSg SINE Alu 0 310 1 1586 202 35 11 chrY 1246756 1247103 -23465976 - MLT1A1 LTR MaLR -10 355 1 1837 109 0 0 chrY 1247422 1247670 -23465409 - AluSc SINE Alu -23 286 39 1340 291 85 6 chrY 1248189 1248659 -23464420 + L2 LINE L2 1780 2286 -1028 262 355 57 28 chrY 1248658 1248799 -23464280 + L2 LINE L2 3168 3312 -1 * 696 211 75 12 chrY 1249861 1250022 -23463057 + MER5B DNA MER1_type 2 172 -6 325 256 33 11 chrY 1250417 1250507 -23462572 + MER5A DNA MER1_type 96 187 -2 1802 207 56 25 chrY 1250584 1251028 -23462051 + LOR1b LTR ERV1 1 458 -3 21 36 0 0 chrY 1251491 1251519 -23461560 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chrY 1251645 1251666 -23461413 + AT_rich Low_complexity Low_complexity 1 21 0 313 321 38 46 chrY 1251675 1251915 -23461164 - L1MC/D LINE L1 -2019 5789 5552 1781 324 62 15 chrY 1252061 1252839 -23460240 - ERVL LTR ERVL -1533 4231 3418 622 331 65 20 chrY 1253208 1253456 -23459623 - LTR33 LTR ERVL -237 284 26 329 204 49 21 chrY 1253471 1253613 -23459466 + (TA)n Simple_repeat Simple_repeat 1 146 0 263 311 54 56 chrY 1253639 1254230 -23458849 - L1MC/D LINE L1 -1449 4697 4108 1303 219 50 14 chrY 1254360 1254638 -23458441 + AluJo SINE Alu 1 288 -24 2268 262 16 8 chrY 1255020 1255730 -23457349 - L1MC/D LINE L1 -2400 3746 3032 432 338 76 60 chrY 1255793 1256571 -23456508 + L1M4 LINE L1 3604 4393 -1753 10302 175 18 65 chrY 1256583 1258661 -23454418 + L1PA15-16 LINE L1 5 1986 -4863 262 100 0 0 chrY 1258746 1258786 -23454293 - L1PA7 LINE L1 -5 6149 6110 7068 229 29 29 chrY 1258888 1261449 -23451630 - L1MA9 LINE L1 -372 5940 3393 221 252 0 8 chrY 1261472 1261603 -23451476 + (TA)n Simple_repeat Simple_repeat 2 131 0 280 314 21 0 chrY 1261629 1261769 -23451310 + (TA)n Simple_repeat Simple_repeat 1 143 0 495 252 125 22 chrY 1261775 1262144 -23450935 - L1MC/D LINE L1 -3506 2640 2234 255 103 0 0 chrY 1262190 1262229 -23450850 + (CA)n Simple_repeat Simple_repeat 2 40 0 1162 229 41 25 chrY 1262233 1262547 -23450532 - L1MD1 LINE L1 -152 6090 5772 16853 194 40 27 chrY 1262555 1269401 -23443678 - L1M1 LINE L1 -743 6822 17 263 350 36 29 chrY 1269632 1269772 -23443307 + L2 LINE L2 3101 3241 -31 22 35 0 0 chrY 1270523 1270552 -23442527 + AT_rich Low_complexity Low_complexity 1 29 0 2210 96 0 39 chrY 1270700 1271012 -23442067 + AluY SINE Alu 1 300 -11 1971 134 0 10 chrY 1271065 1271355 -23441724 + AluSx SINE Alu 1 287 -25 589 160 0 19 chrY 1271275 1271381 -23441698 + AluY SINE Alu 207 310 -1 1573 209 0 20 chrY 1271471 1271772 -23441307 + AluJo SINE Alu 1 295 -17 1652 171 0 4 chrY 1272114 1272389 -23440690 - L1PB3 LINE L1 -2 6152 5879 2023 205 24 7 chrY 1272390 1272805 -23440274 - MER50 LTR ERV1 -23 711 290 1467 138 5 9 chrY 1272805 1273029 -23440050 - MER4A LTR ERV1 0 664 442 10069 123 43 23 chrY 1273029 1274873 -23438206 - MER4A-int LTR ERV1 -874 5724 3844 30340 107 9 25 chrY 1274873 1280656 -23432423 + L1PA7 LINE L1 1 5775 -701 2345 88 0 3 chrY 1280656 1280961 -23432118 + AluSc SINE Alu 4 307 -2 30340 107 9 25 chrY 1280961 1281653 -23431426 + L1PA7 LINE L1 5775 6476 0 1449 169 45 34 chrY 1281663 1282042 -23431037 - MER4A-int LTR ERV1 -2912 3686 3304 1655 144 70 3 chrY 1282070 1282458 -23430621 - MER4A-int LTR ERV1 -3448 3150 2737 1153 208 5 0 chrY 1282458 1282674 -23430405 + LTR8 LTR ERV1 1 217 -474 11253 119 118 47 chrY 1282680 1285016 -23428063 - MER4A-int LTR ERV1 -4095 2503 1 1866 121 6 22 chrY 1285030 1285370 -23427709 - MER4A LTR ERV1 -11 653 261 654 121 0 10 chrY 1285370 1285469 -23427610 - MER4A LTR ERV1 -566 98 1 1582 171 29 0 chrY 1285470 1285750 -23427329 - MER50 LTR ERV1 -446 288 1 1469 121 8 15 chrY 1285750 1286015 -23427064 - MER50-int LTR ERV1 -8 7197 6849 6895 116 29 38 chrY 1286015 1287166 -23425913 - MER50-int LTR ERV1 -1007 6198 5059 330 115 37 7 chrY 1287156 1287224 -23425855 - MER50-int LTR ERV1 -1499 4962 4381 * 1797 139 17 10 chrY 1287224 1287519 -23425560 + THE1A LTR MaLR 1 297 -58 1728 97 0 0 chrY 1287525 1287762 -23425317 + THE1A-int LTR MaLR 206 442 -1138 8016 213 38 18 chrY 1287768 1289539 -23423540 - MER50-int LTR ERV1 -2612 4593 2788 3844 156 32 47 chrY 1289543 1289676 -23423403 - MER50-int LTR ERV1 -5365 1840 1707 2090 102 11 7 chrY 1289676 1289986 -23423093 + AluSp SINE Alu 1 311 0 3844 156 32 47 chrY 1289986 1290577 -23422502 - MER50-int LTR ERV1 -5498 1707 1126 3109 177 20 6 chrY 1290599 1291511 -23421568 - MER50-int LTR ERV1 -6217 988 1 3682 170 33 35 chrY 1291511 1292247 -23420832 - MER50 LTR ERV1 0 734 1 380 167 0 0 chrY 1292247 1292307 -23420772 - L1PB3 LINE L1 -277 5877 5818 22 0 0 0 chrY 1292479 1292501 -23420578 + AT_rich Low_complexity Low_complexity 1 22 0 21 71 0 0 chrY 1292641 1292683 -23420396 + AT_rich Low_complexity Low_complexity 1 42 0 1352 123 44 0 chrY 1292904 1293107 -23419972 + MER30 DNA MER1_type 1 212 -18 1083 220 5 59 chrY 1293659 1294033 -23419046 - MER31B LTR ERV1 0 466 1 223 271 0 0 chrY 1295912 1295960 -23417119 + L2 LINE L2 3213 3260 -12 222 113 0 57 chrY 1296697 1296750 -23416329 + (TAAAA)n Simple_repeat Simple_repeat 1 50 0 497 116 0 0 chrY 1296766 1296835 -23416244 - AluS SINE Alu -15 294 226 1527 179 27 9 chrY 1296863 1297301 -23415778 - LTR27 LTR ERV1 0 501 91 448 207 0 0 chrY 1297272 1297354 -23415725 - LTR28 LTR ERV1 -938 82 1 * 25 65 0 0 chrY 1297561 1297607 -23415472 + AT_rich Low_complexity Low_complexity 1 46 0 492 114 81 0 chrY 1297825 1297974 -23415105 + (TA)n Simple_repeat Simple_repeat 1 161 0 230 137 77 18 chrY 1298016 1298184 -23414895 + (TA)n Simple_repeat Simple_repeat 1 178 0 2177 236 69 20 chrY 1298379 1298984 -23414095 - MER99 DNA DNA -2 826 192 39 92 0 0 chrY 1299327 1299436 -23413643 + AT_rich Low_complexity Low_complexity 1 109 0 366 284 63 0 chrY 1299669 1299764 -23413315 - MER99 DNA DNA -727 101 1 368 289 47 23 chrY 1299954 1300082 -23412997 - MIR SINE MIR -10 252 122 624 298 18 11 chrY 1301360 1301642 -23411437 - L1ME3A LINE L1 -219 5951 5668 1683 198 15 53 chrY 1301916 1302346 -23410733 + MLT2D LTR ERVL 10 520 0 949 296 81 59 chrY 1302454 1303215 -23409864 - L1ME3A LINE L1 -905 5241 4498 2033 95 21 7 chrY 1303215 1303532 -23409547 + AluY SINE Alu 1 311 0 949 296 81 59 chrY 1303532 1303766 -23409313 - L1ME3A LINE L1 -1648 4498 4271 1770 199 3 0 chrY 1303766 1304068 -23409011 + AluJb SINE Alu 1 303 -9 949 296 81 59 chrY 1304068 1304112 -23408967 - L1ME3A LINE L1 -1875 4271 4229 2409 86 0 0 chrY 1304112 1304416 -23408663 + AluSq SINE Alu 1 304 -9 949 296 81 59 chrY 1304416 1304689 -23408390 - L1ME3A LINE L1 -1917 4229 3898 40 72 0 18 chrY 1304702 1304771 -23408308 + AT_rich Low_complexity Low_complexity 1 69 -40 1359 186 93 11 chrY 1304771 1305040 -23408039 + AluJb SINE Alu 1 291 -21 40 72 0 18 chrY 1305040 1305081 -23407998 + AT_rich Low_complexity Low_complexity 69 109 0 663 269 5 46 chrY 1305399 1305615 -23407464 - MLT1E1 LTR MaLR 0 654 448 2295 153 135 41 chrY 1305678 1306195 -23406884 + LTR49 LTR ERV1 1 566 -29 1230 228 118 57 chrY 1306292 1306984 -23406095 - MER61E LTR ERV1 -2 777 1 431 153 266 16 chrY 1306984 1307108 -23405971 - MER4C LTR ERV1 -20 445 291 1422 170 50 50 chrY 1307260 1307602 -23405477 - MER4A LTR ERV1 -322 342 1 2263 175 70 52 chrY 1307765 1308250 -23404829 + LTR26B LTR ERV1 1 494 -37 1924 160 16 0 chrY 1308537 1308844 -23404235 - AluSx SINE Alu 0 312 1 649 118 0 11 chrY 1308946 1309036 -23404043 - LTR35 LTR ERV1 0 618 530 298 192 0 0 chrY 1309036 1309088 -23403991 - MLT2A2 LTR ERVL 0 453 402 249 177 32 0 chrY 1309095 1309157 -23403922 + (TA)n Simple_repeat Simple_repeat 1 64 0 320 305 0 11 chrY 1309157 1309252 -23403827 + L1MC4 LINE L1 6610 6703 -1339 306 303 22 0 chrY 1309269 1309358 -23403721 + L1MC4 LINE L1 6615 6705 -1337 * 309 318 0 0 chrY 1309300 1309388 -23403691 - L1MC4 LINE L1 -1341 6701 6614 303 247 0 62 chrY 1309399 1309496 -23403583 + L1MC4 LINE L1 6613 6703 -1339 487 132 46 7 chrY 1309496 1309648 -23403431 + (TA)n Simple_repeat Simple_repeat 2 159 0 3492 226 97 2 chrY 1309857 1310707 -23402372 + L1PA12 LINE L1 656 1585 -5996 2751 192 25 17 chrY 1310710 1311344 -23401735 + L1PA12 LINE L1 2405 3043 -4531 1174 81 46 12 chrY 1311564 1311769 -23401310 + AluY SINE Alu 111 311 0 264 235 67 0 chrY 1311801 1311920 -23401159 - L1M4 LINE L1 -1720 4426 4300 1635 199 14 0 chrY 1312003 1312300 -23400779 + AluJb SINE Alu 1 301 -11 1939 143 0 7 chrY 1312343 1312636 -23400443 + AluSq SINE Alu 1 291 -22 264 319 90 90 chrY 1313314 1313593 -23399486 + L2 LINE L2 3029 3307 -6 184 264 75 0 chrY 1313663 1313716 -23399363 + MIR SINE MIR 85 141 -121 363 269 19 10 chrY 1314104 1314208 -23398871 + MLT1D LTR MaLR 4 108 -397 268 136 58 19 chrY 1314350 1314505 -23398574 + (TTATA)n Simple_repeat Simple_repeat 5 165 0 40 37 0 0 chrY 1314515 1314569 -23398510 + AT_rich Low_complexity Low_complexity 1 54 0 368 127 58 17 chrY 1314569 1314742 -23398337 + (TA)n Simple_repeat Simple_repeat 1 180 0 1996 229 20 34 chrY 1314791 1315319 -23397760 - MLT2B3 LTR ERVL -44 508 1 366 159 16 0 chrY 1315319 1315382 -23397697 - LTR35 LTR ERV1 -84 534 471 365 227 83 41 chrY 1315404 1315576 -23397503 - LTR43 LTR ERV1 -163 516 184 2381 154 127 59 chrY 1315619 1316177 -23396902 - LTR4 LTR ERV1 0 596 1 782 206 52 16 chrY 1316277 1316471 -23396608 - PABL_B LTR ERV1 0 667 467 233 304 54 48 chrY 1316549 1316717 -23396362 - PABL_B LTR ERV1 -498 169 1 248 316 55 70 chrY 1316929 1317115 -23395964 + MIR SINE MIR 18 206 -56 22 35 0 0 chrY 1317281 1317310 -23395769 + AT_rich Low_complexity Low_complexity 1 29 0 580 267 127 38 chrY 1317466 1317702 -23395377 + MIR SINE MIR 3 259 -3 417 308 108 23 chrY 1318143 1318357 -23394722 + MIR SINE MIR 31 262 0 369 320 14 20 chrY 1318383 1318530 -23394549 + MLT1L LTR MaLR 434 579 -36 323 333 8 0 chrY 1318623 1318740 -23394339 - L1MC4a LINE L1 -1922 5886 5769 817 271 20 10 chrY 1318741 1318944 -23394135 - MLT1E1 LTR MaLR 0 654 450 265 259 48 24 chrY 1319056 1319222 -23393857 - L1ME4a LINE L1 -68 6053 5884 1458 184 25 179 chrY 1319327 1319853 -23393226 - MER21A LTR ERV1 -486 445 1 2159 214 65 34 chrY 1319853 1320265 -23392814 - L1MB7 LINE L1 -281 6401 6003 198 71 0 0 chrY 1320265 1320293 -23392786 + (TTA)n Simple_repeat Simple_repeat 2 29 0 2159 214 65 34 chrY 1320293 1320619 -23392460 - L1MB7 LINE L1 -679 6003 5639 2484 60 0 28 chrY 1320619 1320937 -23392142 + AluY SINE Alu 1 309 -2 2159 214 65 34 chrY 1320937 1321115 -23391964 - L1MB7 LINE L1 -1043 5639 5468 2595 266 69 8 chrY 1321121 1322182 -23390897 - L1MB7 LINE L1 -1225 5419 4295 3817 155 65 9 chrY 1322191 1322863 -23390216 - MER50 LTR ERV1 -24 710 1 316 231 154 28 chrY 1322865 1323008 -23390071 - L1MB7 LINE L1 -2355 4289 4129 * 348 287 29 0 chrY 1323004 1323178 -23389901 - L1MB7 LINE L1 -3203 3441 3263 * 2457 253 57 44 chrY 1323175 1323950 -23389129 - L1MB7 LINE L1 -5750 792 8 789 208 13 0 chrY 1324016 1324170 -23388909 - AluSg/x SINE Alu 0 310 155 646 275 66 19 chrY 1324225 1324554 -23388525 - MLT1E1 LTR MaLR -262 392 1 44 20 0 0 chrY 1324579 1324630 -23388449 + AT_rich Low_complexity Low_complexity 1 51 0 245 280 70 0 chrY 1324630 1324730 -23388349 - L1ME LINE L1 -459 5662 5556 667 270 79 21 chrY 1324734 1325082 -23387997 - MSTD LTR MaLR -3 393 4 260 238 25 25 chrY 1325141 1325221 -23387858 - MIR SINE MIR 0 262 183 1887 140 25 69 chrY 1325282 1325335 -23387744 + THE1C LTR MaLR 1 55 -320 2768 136 71 2 chrY 1325335 1325813 -23387266 - MER9 LTR ERVK 0 511 1 1887 140 25 69 chrY 1325813 1326151 -23386928 + THE1C LTR MaLR 55 375 0 2211 98 3 7 chrY 1326460 1326756 -23386323 - AluSp SINE Alu -18 295 1 3177 255 75 105 chrY 1327252 1328925 -23384154 + L1MCa LINE L1 1 1779 -4785 1359 201 21 4 chrY 1328929 1329208 -23383871 + L1MC3 LINE L1 7304 7587 -198 2420 47 7 0 chrY 1329208 1329504 -23383575 - AluY SINE Alu -13 298 1 3160 286 108 38 chrY 1329521 1331687 -23381392 + L1M4b LINE L1 6 2331 -4628 934 136 32 1 chrY 1331704 1331887 -23381192 - MER61E LTR ERV1 -20 774 340 243 212 0 106 chrY 1331999 1332065 -23381014 - MER61E LTR ERV1 -412 157 99 * 258 214 34 90 chrY 1332062 1332151 -23380928 - LTR25 LTR ERV1 -431 363 280 29 28 0 0 chrY 1332582 1332618 -23380461 + AT_rich Low_complexity Low_complexity 1 36 0 22 35 0 0 chrY 1332654 1332683 -23380396 + AT_rich Low_complexity Low_complexity 1 29 0 2373 249 72 41 chrY 1332687 1333701 -23379378 + L1M4b LINE L1 2623 3604 -3353 2151 131 0 0 chrY 1333701 1333999 -23379080 + AluSg SINE Alu 1 298 -12 2373 249 72 41 chrY 1333999 1334089 -23378990 + L1M4b LINE L1 3604 3690 -3267 1337 146 22 22 chrY 1334089 1334364 -23378715 + L1MA2 LINE L1 6030 6304 0 2373 249 72 41 chrY 1334364 1334746 -23378333 + L1M4b LINE L1 3690 4105 -2852 618 189 0 0 chrY 1334755 1334866 -23378213 + FLAM_C SINE Alu 9 119 -24 189 107 0 0 chrY 1334866 1334894 -23378185 + (TAAA)n Simple_repeat Simple_repeat 3 30 0 2226 253 20 68 chrY 1334926 1335854 -23377225 + L1M4b LINE L1 4116 4999 -1958 7176 243 52 5 chrY 1335857 1337544 -23375535 - ERVL LTR ERVL -2149 3615 1851 528 254 18 0 chrY 1337524 1337638 -23375441 - ERVL LTR ERVL -4587 1177 1062 * 76 65 0 0 chrY 1337638 1337777 -23375302 + AT_rich Low_complexity Low_complexity 1 139 0 503 301 11 22 chrY 1337809 1337992 -23375087 - ERVL LTR ERVL -4721 1043 863 1271 229 80 6 chrY 1338014 1338328 -23374751 - MLT2C1 LTR ERVL -56 341 5 2091 211 45 48 chrY 1338333 1339034 -23374045 + L1MB8 LINE L1 5674 6174 -4 296 280 20 0 chrY 1340001 1340101 -23372978 - L1M4 LINE L1 -2218 3928 3827 398 267 5 82 chrY 1340158 1340353 -23372726 - L1MEc LINE L1 -4819 1396 1217 1359 249 76 83 chrY 1340371 1340614 -23372465 + MLT1F1 LTR MaLR 1 244 -323 3691 167 110 17 chrY 1340614 1341370 -23371709 - LTR1B LTR ERV1 0 826 1 1359 249 76 83 chrY 1341370 1341668 -23371411 + MLT1F1 LTR MaLR 244 563 -4 561 261 100 49 chrY 1341691 1341978 -23371101 - L1MEc LINE L1 -4872 1357 1069 1620 213 14 19 chrY 1341978 1342339 -23370740 - MLT1A1 LTR MaLR 0 365 7 924 125 17 10 chrY 1342363 1342661 -23370418 + (TA)n Simple_repeat Simple_repeat 1 300 0 1302 112 6 0 chrY 1342664 1342843 -23370236 - AluSg/x SINE Alu -20 289 110 2327 261 67 18 chrY 1342908 1343762 -23369317 - L1MEc LINE L1 -4968 912 45 21 36 0 0 chrY 1343781 1343809 -23369270 + AT_rich Low_complexity Low_complexity 1 28 0 206 324 127 12 chrY 1343957 1344130 -23368949 - L2 LINE L2 0 3313 3121 629 58 0 0 chrY 1344288 1344374 -23368705 + L1MA1 LINE L1 6213 6298 -4 252 174 0 0 chrY 1344434 1344480 -23368599 - MLT2B2 LTR ERVL -6 509 464 1809 226 116 9 chrY 1344480 1344927 -23368152 - MLT2B2 LTR ERVL -20 495 1 11702 189 9 43 chrY 1344929 1346341 -23366738 - ERVL-B2 LTR ERVL -9 5755 4297 2020 222 21 2 chrY 1346341 1346765 -23366314 - MSTB1 LTR MaLR 0 432 1 11702 189 9 43 chrY 1346765 1347527 -23365552 - ERVL-B2 LTR ERVL -1467 4297 3662 2123 215 24 5 chrY 1347527 1347945 -23365134 - MSTB LTR MaLR 0 426 1 11702 189 9 43 chrY 1347945 1348098 -23364981 - ERVL-B2 LTR ERVL -2102 3662 3505 6312 158 34 3 chrY 1348195 1349602 -23363477 + L1MA1 LINE L1 4832 6302 0 212 316 13 0 chrY 1350295 1350374 -23362705 + MIR SINE MIR 181 260 -2 33 43 0 0 chrY 1350502 1350549 -23362530 + AT_rich Low_complexity Low_complexity 1 47 0 1151 108 11 5 chrY 1350973 1351159 -23361920 - L1MA6 LINE L1 0 6300 6114 31 26 0 0 chrY 1351556 1351594 -23361485 + AT_rich Low_complexity Low_complexity 1 38 0 2921 220 54 18 chrY 1351606 1352346 -23360733 - L1MC3 LINE L1 -1635 6150 5384 185 0 40 0 chrY 1352828 1352853 -23360226 + (TA)n Simple_repeat Simple_repeat 1 26 0 1424 251 123 34 chrY 1352879 1353350 -23359729 + MLT1E LTR MaLR 8 520 -73 355 286 87 43 chrY 1353513 1353698 -23359381 + L2 LINE L2 3093 3285 -28 511 315 76 21 chrY 1353930 1354168 -23358911 + MIR SINE MIR 5 255 -7 318 357 0 9 chrY 1354214 1354326 -23358753 + MIR SINE MIR 2 112 -150 25 75 0 0 chrY 1354362 1354415 -23358664 + AT_rich Low_complexity Low_complexity 1 53 0 6596 84 2 3 chrY 1354440 1356103 -23356976 - L1PA8 LINE L1 -3 6169 4510 251 274 84 11 chrY 1356104 1356199 -23356880 + MIR SINE MIR 159 260 -2 26 30 0 0 chrY 1358186 1358219 -23354860 + AT_rich Low_complexity Low_complexity 1 33 0 318 301 21 21 chrY 1358801 1358894 -23354185 + L2 LINE L2 3102 3194 -78 3612 164 33 45 chrY 1360687 1360925 -23352154 - LTR62 LTR ERVK -4 715 476 2478 53 0 0 chrY 1360925 1361226 -23351853 + AluY SINE Alu 1 301 -10 3612 164 33 45 chrY 1361226 1361705 -23351374 - LTR62 LTR ERVK -243 476 6 31 44 0 0 chrY 1362372 1362417 -23350662 + AT_rich Low_complexity Low_complexity 1 45 0 323 228 43 0 chrY 1362791 1362883 -23350196 - L1ME LINE L1 -354 5808 5713 6986 224 64 1 chrY 1363024 1364140 -23348939 + L1MA1 LINE L1 584 1819 -5746 360 0 0 0 chrY 1364140 1364180 -23348899 + (GA)n Simple_repeat Simple_repeat 1 40 0 6986 224 64 1 chrY 1364180 1364560 -23348519 + L1MA1 LINE L1 1819 2174 -5391 4439 184 59 7 chrY 1364918 1365052 -23348027 + L1M1 LINE L1 1615 1741 -5824 360 0 0 0 chrY 1365052 1365092 -23347987 + (GA)n Simple_repeat Simple_repeat 1 40 0 4439 184 59 7 chrY 1365092 1365857 -23347222 + L1M1 LINE L1 1741 2561 -5004 12782 216 22 17 chrY 1365866 1369403 -23343676 + L1PB1 LINE L1 3 3520 -3347 246 32 0 0 chrY 1369403 1369434 -23343645 + (CA)n Simple_repeat Simple_repeat 2 32 0 12782 216 22 17 chrY 1369434 1370048 -23343031 + L1PB1 LINE L1 3520 4129 -2738 1848 164 4 0 chrY 1370048 1370328 -23342751 + AluSx SINE Alu 1 281 -31 350 21 21 0 chrY 1370331 1370378 -23342701 + (TAAAA)n Simple_repeat Simple_repeat 2 49 0 12782 216 22 17 chrY 1370378 1370620 -23342459 + L1PB1 LINE L1 4130 4369 -2498 2111 108 0 30 chrY 1370620 1370925 -23342154 + AluSc SINE Alu 6 301 -8 12782 216 22 17 chrY 1370925 1373055 -23340024 + L1PB1 LINE L1 4369 6859 -8 297 0 0 0 chrY 1373064 1373097 -23339982 + (TG)n Simple_repeat Simple_repeat 2 34 0 13100 183 31 17 chrY 1373176 1378187 -23334892 + L1MA1 LINE L1 2513 7721 0 24 32 0 0 chrY 1378187 1378218 -23334861 + AT_rich Low_complexity Low_complexity 1 31 0 1868 131 29 0 chrY 1378308 1378609 -23334470 - AluSx SINE Alu 0 309 1 213 192 96 55 chrY 1378780 1378853 -23334226 + L2 LINE L2 3150 3225 -88 3922 154 52 42 chrY 1379685 1381048 -23332031 + pTR5 LTR ERV1 741 2438 0 273 250 12 24 chrY 1381231 1381314 -23331765 - Charlie4a DNA MER1_type -1 507 426 515 186 0 39 chrY 1381314 1381416 -23331663 + MER4A LTR ERV1 1 98 -566 1479 142 13 120 chrY 1381416 1381803 -23331276 + MER4A LTR ERV1 261 664 0 2486 125 95 43 chrY 1381806 1382421 -23330658 + MER4A-int LTR ERV1 1 812 -5786 1163 266 85 3 chrY 1382523 1382842 -23330237 + MER4A-int LTR ERV1 1860 2204 -4127 5096 146 79 30 chrY 1382862 1383843 -23329236 + MER4A-int LTR ERV1 189 1185 -5573 3679 99 101 18 chrY 1383824 1384500 -23328579 + MER4A-int LTR ERV1 1764 2495 -4103 * 913 175 218 0 chrY 1384500 1384711 -23328368 - LTR8 LTR ERV1 -434 257 1 3374 167 74 25 chrY 1384717 1385597 -23327482 + MER4A-int LTR ERV1 2759 3681 -2917 * 13225 121 53 71 chrY 1385596 1388405 -23324674 + MER4A-int LTR ERV1 3837 6596 -2 602 111 10 20 chrY 1388432 1388531 -23324548 + MER4A LTR ERV1 1 98 -566 1614 144 158 78 chrY 1388531 1388905 -23324174 + MER4A LTR ERV1 261 664 0 921 256 96 23 chrY 1388910 1389304 -23323775 - Charlie4a DNA MER1_type -84 424 2 6070 118 43 12 chrY 1390055 1391074 -23322005 + L1MA2 LINE L1 5254 6304 0 2523 233 18 11 chrY 1392506 1392546 -23320533 - MLT2B3 LTR ERVL 0 554 516 240 35 0 0 chrY 1392546 1392575 -23320504 + (CATA)n Simple_repeat Simple_repeat 2 30 0 2523 233 18 11 chrY 1392575 1393084 -23319995 - MLT2B3 LTR ERVL -38 516 1 5024 171 10 7 chrY 1393886 1394288 -23318791 + L1PA15 LINE L1 5090 5489 -676 189 74 0 0 chrY 1394288 1394315 -23318764 + (CAAAA)n Simple_repeat Simple_repeat 3 29 0 5024 171 10 7 chrY 1394315 1394986 -23318093 + L1PA15 LINE L1 5489 6163 -2 2678 223 26 23 chrY 1395093 1395739 -23317340 + MER82 DNA MER2_type 2 649 -4 180 176 0 0 chrY 1395813 1395847 -23317232 + GA-rich Low_complexity Low_complexity 1 34 0 633 161 0 18 chrY 1395966 1396078 -23317001 - FLAM_C SINE Alu -12 131 22 37 23 0 0 chrY 1396664 1396708 -23316371 + AT_rich Low_complexity Low_complexity 1 44 0 228 214 0 57 chrY 1396708 1396778 -23316301 + L1M4 LINE L1 4749 4814 -1332 23 86 0 0 chrY 1396903 1396961 -23316118 + AT_rich Low_complexity Low_complexity 1 58 0 374 316 43 0 chrY 1397599 1397716 -23315363 + MIR SINE MIR 40 161 -101 679 235 31 133 chrY 1397725 1398108 -23314971 + MLT1B LTR MaLR 18 386 -4 256 327 50 0 chrY 1398110 1398211 -23314868 + MIR SINE MIR 154 259 -3 327 347 45 23 chrY 1398318 1398494 -23314585 + MIR SINE MIR 1 180 -82 2160 52 7 17 chrY 1398562 1398900 -23314179 + AluY SINE Alu 1 335 0 848 320 68 10 chrY 1398986 1399474 -23313605 + Charlie7 DNA MER1_type 43 558 -2054 7849 158 18 41 chrY 1399520 1401013 -23312066 - Tigger1 DNA MER2_type -1 2417 959 3931 180 10 1 chrY 1401030 1401701 -23311378 - Tigger1 DNA MER2_type -1741 677 1 189 147 0 0 chrY 1401887 1401921 -23311158 + (TA)n Simple_repeat Simple_repeat 1 34 0 432 237 54 0 chrY 1402146 1402239 -23310840 + L1MC1 LINE L1 19 116 -6310 * 7101 238 44 44 chrY 1402215 1403096 -23309983 + L1MC1 LINE L1 2853 3733 -2880 2220 97 10 3 chrY 1403096 1403404 -23309675 + AluSx SINE Alu 1 310 -2 7101 238 44 44 chrY 1403404 1404467 -23308612 + L1MC1 LINE L1 3733 4795 -1818 1543 198 52 25 chrY 1404467 1404649 -23308430 + THE1C LTR MaLR 1 177 -198 234 62 0 0 chrY 1404649 1404681 -23308398 + (CA)n Simple_repeat Simple_repeat 2 33 0 1543 198 52 25 chrY 1404681 1404862 -23308217 + THE1C LTR MaLR 177 374 -1 7101 238 44 44 chrY 1404862 1406666 -23306413 + L1MC1 LINE L1 4795 6596 -17 13353 212 36 13 chrY 1406773 1407126 -23305953 + L1PB1 LINE L1 1326 1669 -5198 207 0 0 0 chrY 1407126 1407149 -23305930 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 13353 212 36 13 chrY 1407149 1407577 -23305502 + L1PB1 LINE L1 1669 2086 -4781 274 81 0 0 chrY 1407577 1407614 -23305465 - MADE1 DNA Mariner -41 39 3 13353 212 36 13 chrY 1407614 1409730 -23303349 + L1PB1 LINE L1 2086 4151 -2716 267 54 0 0 chrY 1409730 1409767 -23303312 + (CAA)n Simple_repeat Simple_repeat 2 38 0 13353 212 36 13 chrY 1409767 1411598 -23301481 + L1PB1 LINE L1 4151 6291 -576 4501 107 140 26 chrY 1411598 1412339 -23300740 - LTR12 LTR ERV1 0 826 1 13353 212 36 13 chrY 1412339 1412512 -23300567 + L1PB1 LINE L1 6291 6458 -409 360 111 0 0 chrY 1412514 1412568 -23300511 + (TA)n Simple_repeat Simple_repeat 2 55 0 2207 144 14 0 chrY 1412568 1412928 -23300151 + L1PB1 LINE L1 6502 6866 -1 1933 95 0 4 chrY 1413115 1413368 -23299711 - AluY SINE Alu -16 295 44 25 31 0 0 chrY 1413538 1413570 -23299509 + AT_rich Low_complexity Low_complexity 1 32 0 733 248 0 43 chrY 1413741 1413951 -23299128 - L1PA16 LINE L1 -5 6161 5961 1603 192 13 6 chrY 1413951 1414264 -23298815 - L1PA15 LINE L1 0 6816 6502 1012 225 120 0 chrY 1414298 1414574 -23298505 - L1PA15 LINE L1 -1415 5382 5074 1957 190 80 3 chrY 1414583 1414972 -23298107 + MSTA LTR MaLR 10 428 0 7358 230 15 9 chrY 1414972 1416609 -23296470 + MSTA-int LTR MaLR 1 1648 -3 1964 200 56 12 chrY 1416612 1417022 -23296057 + MSTA LTR MaLR 1 428 0 10821 224 25 31 chrY 1417022 1420665 -23292414 - L1PA15 LINE L1 -1720 5077 1459 1307 257 51 60 chrY 1421207 1421674 -23291405 + L1MCa LINE L1 47 509 -5917 995 149 13 53 chrY 1421677 1421878 -23291201 + THE1B LTR MaLR 193 364 0 9194 145 13 35 chrY 1421881 1423458 -23289621 + THE1C-int LTR MaLR 4 1544 -36 2643 211 58 26 chrY 1423458 1423496 -23289583 + LTR39 LTR ERV1 115 150 -633 1460 186 72 31 chrY 1423496 1423856 -23289223 + THE1C LTR MaLR 1 375 0 2643 211 58 26 chrY 1423856 1424437 -23288642 + LTR39 LTR ERV1 150 754 -29 3786 186 19 8 chrY 1424444 1425148 -23287931 - MER50 LTR ERV1 -23 711 1 2057 120 13 13 chrY 1425148 1425465 -23287614 - MER50-int LTR ERV1 -8 7197 6881 * 19817 152 29 29 chrY 1425462 1425839 -23287240 - MER50-int LTR ERV1 -1177 6028 5652 189 265 61 0 chrY 1425839 1425888 -23287191 + MIR SINE MIR 69 120 -88 19817 152 29 29 chrY 1425888 1430088 -23282991 - MER50-int LTR ERV1 -1553 5652 446 13193 145 10 2 chrY 1430088 1432288 -23280791 + L1PA10 LINE L1 3082 5299 -847 1418 163 11 65 chrY 1432301 1432577 -23280502 + AluSx SINE Alu 38 298 -14 5690 102 8 19 chrY 1432578 1433419 -23279660 + L1PA10 LINE L1 5320 6151 -17 857 97 15 30 chrY 1433419 1433553 -23279526 - MER50-int LTR ERV1 -6311 894 763 290 105 0 0 chrY 1433567 1433605 -23279474 + MER50-int LTR ERV1 757 794 -6411 * 4840 147 8 4 chrY 1433604 1434359 -23278720 - MER50-int LTR ERV1 -6447 758 1 3543 153 45 53 chrY 1434359 1434629 -23278450 - MER50 LTR ERV1 0 734 463 2344 82 7 0 chrY 1434629 1434934 -23278145 - AluSc SINE Alu -2 307 1 3543 153 45 53 chrY 1434934 1435403 -23277676 - MER50 LTR ERV1 -271 463 1 23 54 0 0 chrY 1435516 1435553 -23277526 + AT_rich Low_complexity Low_complexity 1 37 0 22 35 0 0 chrY 1436406 1436435 -23276644 + AT_rich Low_complexity Low_complexity 1 29 0 1992 205 123 91 chrY 1436731 1437482 -23275597 + LTR48 LTR ERV1 13 787 0 24 67 0 0 chrY 1438708 1438753 -23274326 + AT_rich Low_complexity Low_complexity 1 45 0 1982 86 82 4 chrY 1438965 1439244 -23273835 - AluSq SINE Alu -12 301 1 858 246 20 106 chrY 1440205 1440600 -23272479 + MLT1A1 LTR MaLR 5 365 0 30 0 0 0 chrY 1441530 1441560 -23271519 + AT_rich Low_complexity Low_complexity 1 30 0 29 28 0 0 chrY 1442307 1442343 -23270736 + AT_rich Low_complexity Low_complexity 1 36 0 187 283 0 19 chrY 1443281 1443334 -23269745 + MIR SINE MIR 161 212 -50 280 275 68 2 chrY 1443853 1443956 -23269123 - MIR SINE MIR -65 143 36 3372 172 47 37 chrY 1444049 1444099 -23268980 - L1MC2 LINE L1 -10 6614 6566 2250 69 0 33 chrY 1444099 1444403 -23268676 + AluY SINE Alu 1 294 -17 3372 172 47 37 chrY 1444403 1445101 -23267978 - L1MC2 LINE L1 -58 6566 5859 * 6973 208 12 6 chrY 1445085 1447586 -23265493 + L1PA16 LINE L1 3658 6166 0 2604 246 76 14 chrY 1447586 1448898 -23264181 - L1MC2 LINE L1 -750 5676 4477 1824 248 27 8 chrY 1448891 1449701 -23263378 - L1MC2 LINE L1 -3353 3073 2247 * 318 271 82 29 chrY 1449738 1449908 -23263171 + L1MCa LINE L1 2051 2229 -4197 369 243 19 0 chrY 1450081 1450184 -23262895 - L1MA10 LINE L1 -2 6332 6228 399 322 29 21 chrY 1450192 1450498 -23262581 - L1M4 LINE L1 -2324 3822 3519 21 36 0 0 chrY 1451036 1451064 -23262015 + AT_rich Low_complexity Low_complexity 1 28 0 32 0 0 0 chrY 1451515 1451547 -23261532 + AT_rich Low_complexity Low_complexity 1 32 0 9202 240 81 21 chrY 1451547 1455719 -23257360 - L1PA16 LINE L1 -22 6144 1706 599 173 10 0 chrY 1455739 1455843 -23257236 - U6 snRNA snRNA -2 105 1 244 323 71 32 chrY 1456102 1456257 -23256822 - MIR SINE MIR -10 252 92 22 0 0 0 chrY 1456759 1456781 -23256298 + AT_rich Low_complexity Low_complexity 1 22 0 738 295 91 21 chrY 1457538 1457779 -23255300 - MIR SINE MIR 0 262 5 21 0 0 0 chrY 1458743 1458764 -23254315 + AT_rich Low_complexity Low_complexity 1 21 0 474 260 48 57 chrY 1458945 1459172 -23253907 + HAL1 LINE L1 2283 2507 0 16497 170 19 17 chrY 1459195 1462168 -23250911 + L1PA15-16 LINE L1 1 2979 -3870 2201 106 0 3 chrY 1462317 1462610 -23250469 - AluY SINE Alu -19 292 1 28 0 0 0 chrY 1462621 1462649 -23250430 + AT_rich Low_complexity Low_complexity 1 28 0 334 133 94 39 chrY 1462658 1462786 -23250293 + (TATAA)n Simple_repeat Simple_repeat 1 135 0 402 329 58 13 chrY 1463229 1463384 -23249695 - L2 LINE L2 -2074 1240 1079 2219 92 20 32 chrY 1463979 1464326 -23248753 - L1PA12 LINE L1 -2 6166 5824 253 349 94 9 chrY 1464397 1464503 -23248576 - L2 LINE L2 -5 3308 3194 329 365 37 45 chrY 1464700 1464944 -23248135 - MIR SINE MIR -19 243 2 483 214 10 10 chrY 1464972 1465070 -23248009 - Tigger7 DNA MER2_type 0 2487 2390 1094 235 49 4 chrY 1465070 1465317 -23247762 - Tigger7 DNA MER2_type -2223 264 7 201 342 22 82 chrY 1466254 1466438 -23246641 + L2 LINE L2 2911 3083 -189 207 333 67 44 chrY 1466555 1466645 -23246434 + L2 LINE L2 3173 3264 -8 1670 48 0 0 chrY 1467835 1468043 -23245036 - L1PA4 LINE L1 -8 6147 5940 2141 143 75 36 chrY 1469552 1469964 -23243115 - MSTA LTR MaLR 0 428 1 24 53 0 0 chrY 1470054 1470092 -23242987 + AT_rich Low_complexity Low_complexity 1 38 0 2209 96 0 0 chrY 1470677 1470997 -23242082 - AluSc SINE Alu 0 320 1 25 0 0 0 chrY 1471262 1471287 -23241792 + AT_rich Low_complexity Low_complexity 1 25 0 440 254 103 87 chrY 1471411 1471596 -23241483 - MIR SINE MIR -25 237 50 280 318 29 64 chrY 1471663 1471836 -23241243 + MER5B DNA MER1_type 2 168 -10 6823 187 72 18 chrY 1472422 1473356 -23239723 - L1MA3 LINE L1 -215 7509 6627 198 0 0 0 chrY 1473356 1473378 -23239701 + (TTTTA)n Simple_repeat Simple_repeat 4 25 0 6823 187 72 18 chrY 1473378 1475632 -23237447 - L1MA3 LINE L1 -1097 6627 4027 1686 212 3 3 chrY 1475630 1475941 -23237138 - L1MA3 LINE L1 -6840 725 415 * 3078 169 49 34 chrY 1475941 1476758 -23236321 - pTR5 LTR ERV1 -437 2001 5 320 246 45 18 chrY 1477330 1477440 -23235639 - L1MA9 LINE L1 -173 6139 6027 6811 248 43 36 chrY 1478110 1479794 -23233285 + L1M3 LINE L1 2466 4137 -2009 2142 125 6 10 chrY 1479794 1480107 -23232972 + AluSx SINE Alu 1 312 0 6811 248 43 36 chrY 1480107 1480220 -23232859 + L1M3 LINE L1 4137 4248 -1898 2426 83 0 0 chrY 1480220 1480532 -23232547 - AluSq SINE Alu -1 312 1 6811 248 43 36 chrY 1480532 1480761 -23232318 + L1M3 LINE L1 4248 4474 -1672 1503 220 31 11 chrY 1480761 1481115 -23231964 + MLT1A1 LTR MaLR 5 365 0 6811 248 43 36 chrY 1481115 1481842 -23231237 + L1M3 LINE L1 4474 5297 -849 2188 150 29 3 chrY 1481855 1482229 -23230850 + L1M3 LINE L1 5401 5784 -399 1595 239 20 0 chrY 1482231 1482587 -23230492 - MLT1A1 LTR MaLR -2 363 1 4471 241 47 51 chrY 1482587 1483871 -23229208 - MLT1A1-int LTR MaLR 0 1735 458 2621 204 24 9 chrY 1483854 1484432 -23228647 + L1MA7 LINE L1 5350 5936 -355 * 252 0 0 0 chrY 1484703 1484731 -23228348 + (CA)n Simple_repeat Simple_repeat 2 29 0 273 29 0 0 chrY 1484732 1484766 -23228313 + (GA)n Simple_repeat Simple_repeat 1 34 0 811 311 72 43 chrY 1485173 1485643 -23227436 - MLT1H LTR MaLR -1 548 65 1344 204 139 79 chrY 1485833 1486352 -23226727 + MLT2B3 LTR ERVL 1 550 -4 230 291 0 0 chrY 1486356 1486411 -23226668 + Tigger5 DNA MER2_type 1 55 -2268 * 514 209 38 0 chrY 1486403 1486508 -23226571 + Tigger5 DNA MER2_type 2215 2323 0 727 341 35 29 chrY 1486889 1487340 -23225739 + L1PA16 LINE L1 789 1242 -6332 1725 150 7 0 chrY 1487663 1487936 -23225143 + AluSx SINE Alu 3 277 -35 868 295 59 33 chrY 1488253 1488555 -23224524 + L1PA16 LINE L1 2183 2476 -5098 297 0 0 0 chrY 1488555 1488588 -23224491 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 868 295 59 33 chrY 1488588 1488688 -23224391 + L1PA16 LINE L1 2476 2589 -4985 2415 76 3 0 chrY 1488688 1488989 -23224090 + AluY SINE Alu 1 302 -9 868 295 59 33 chrY 1488989 1489041 -23224038 + L1PA16 LINE L1 2589 2638 -4936 2844 104 35 14 chrY 1489042 1489433 -23223646 + MLT2A1 LTR ERVL 1 403 -41 243 61 0 0 chrY 1489433 1489466 -23223613 + (TA)n Simple_repeat Simple_repeat 1 33 0 2844 104 35 14 chrY 1489466 1489506 -23223573 + MLT2A1 LTR ERVL 403 441 -3 40674 91 15 8 chrY 1489510 1494167 -23218912 + HERVL-A1 LTR ERVL 1 4732 -922 194 88 0 29 chrY 1494167 1494201 -23218878 + L2 LINE L2 1661 1693 -1621 40674 91 15 8 chrY 1494201 1495054 -23218025 + HERVL-A1 LTR ERVL 4732 5578 -76 2818 111 0 5 chrY 1495091 1495497 -23217582 + MLT2A1 LTR ERVL 1 404 -40 278 137 20 20 chrY 1495501 1495603 -23217476 + (TA)n Simple_repeat Simple_repeat 1 102 0 290 139 74 8 chrY 1495636 1495704 -23217375 + MLT2A2 LTR ERVL 400 453 0 12610 238 22 11 chrY 1495735 1500598 -23212481 + L1PA16 LINE L1 2676 7598 -6 184 0 0 88 chrY 1500832 1500866 -23212213 + (TTTTC)n Simple_repeat Simple_repeat 5 35 0 444 279 31 8 chrY 1500883 1501012 -23212067 + MIR SINE MIR 61 192 -70 23 0 0 0 chrY 1501144 1501167 -23211912 + AT_rich Low_complexity Low_complexity 1 23 0 262 258 31 12 chrY 1501840 1502003 -23211076 + (TA)n Simple_repeat Simple_repeat 2 167 0 9353 26 1 3 chrY 1502029 1503912 -23209167 - L1PA3 LINE L1 -3 6152 4271 280 249 45 124 chrY 1505262 1505439 -23207640 + MER103 DNA DNA 1 163 -3 21 36 0 0 chrY 1505667 1505695 -23207384 + AT_rich Low_complexity Low_complexity 1 28 0 191 267 22 67 chrY 1506892 1506982 -23206097 - MIR3 SINE MIR -13 195 110 202 244 0 0 chrY 1507805 1507850 -23205229 + (TA)n Simple_repeat Simple_repeat 1 45 0 1823 209 66 18 chrY 1509095 1509535 -23203544 + LOR1b LTR ERV1 1 461 0 656 142 55 31 chrY 1509538 1509665 -23203414 + LOR1b-int LTR ERV1 266 395 -7725 3301 153 83 15 chrY 1509666 1510280 -23202799 + LOR1-int LTR ERV1 203 858 -7262 881 158 35 0 chrY 1510272 1510443 -23202636 + LOR1-int LTR ERV1 2075 2251 -5869 * 2938 52 6 0 chrY 1510445 1510810 -23202269 - L1PA7 LINE L1 -4 6150 5784 12568 98 6 7 chrY 1510829 1512664 -23200415 + L1P LINE L1 1783 3615 -2531 1302 247 136 42 chrY 1512667 1513456 -23199623 - LTR28 LTR ERV1 -27 993 1 8436 125 30 33 chrY 1513456 1514930 -23198149 + LOR1b-int LTR ERV1 2363 3833 -4287 9631 139 31 32 chrY 1514970 1516757 -23196322 + LOR1b-int LTR ERV1 3743 5528 -2592 1596 161 20 0 chrY 1516743 1516998 -23196081 + LOR1b-int LTR ERV1 5801 6060 -2060 * 578 135 0 0 chrY 1517000 1517089 -23195990 + LOR1b-int LTR ERV1 8030 8118 -2 2028 189 90 2 chrY 1517100 1517524 -23195555 + LOR1b LTR ERV1 1 461 0 11934 243 52 24 chrY 1517768 1524156 -23188923 - L1MA5 LINE L1 -6 7356 1 712 235 45 30 chrY 1525237 1525437 -23187642 - MER3 DNA MER1_type -5 204 2 265 309 41 0 chrY 1525523 1525620 -23187459 - Charlie7 DNA MER1_type -2511 101 1 21 36 0 0 chrY 1525827 1525855 -23187224 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chrY 1526223 1526245 -23186834 + AT_rich Low_complexity Low_complexity 1 22 0 375 41 0 0 chrY 1527153 1527202 -23185877 + (GA)n Simple_repeat Simple_repeat 2 50 0 1734 139 88 0 chrY 1527397 1527670 -23185409 - AluSx SINE Alu -15 297 1 10674 203 52 105 chrY 1527747 1530483 -23182596 + L1P3 LINE L1 4 2858 -3603 1864 150 64 9 chrY 1530483 1530810 -23182269 + THE1B LTR MaLR 1 345 -19 10674 203 52 105 chrY 1530810 1532029 -23181050 + L1P3 LINE L1 2858 4141 -2320 425 250 56 0 chrY 1532017 1532125 -23180954 + L1MC4a LINE L1 6725 6838 -970 * 24 32 0 0 chrY 1532128 1532159 -23180920 + AT_rich Low_complexity Low_complexity 1 31 0 654 294 86 46 chrY 1532275 1532907 -23180172 + L1M4 LINE L1 3106 3822 -2324 387 0 0 0 chrY 1532907 1532950 -23180129 + (CA)n Simple_repeat Simple_repeat 2 44 0 654 294 86 46 chrY 1532950 1533396 -23179683 + L1M4 LINE L1 3822 4249 -1897 1434 192 137 57 chrY 1533508 1533909 -23179170 - MLT2B1 LTR ERVL -87 433 1 366 247 58 31 chrY 1534033 1534256 -23178823 + L1M4 LINE L1 4370 4598 -1548 384 296 107 9 chrY 1534306 1534623 -23178456 + L1M4 LINE L1 4711 5058 -1088 430 284 57 5 chrY 1534627 1534821 -23178258 + L1M4 LINE L1 4904 5107 -1039 * 1784 282 73 25 chrY 1534807 1535750 -23177329 + L1MC4a LINE L1 2235 3132 -3014 1605 176 0 41 chrY 1535750 1536040 -23177039 + AluJo SINE Alu 1 278 -34 396 0 0 0 chrY 1536040 1536084 -23176995 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 1784 282 73 25 chrY 1536084 1536129 -23176950 + L1MC4a LINE L1 3131 3271 -2875 1634 107 0 0 chrY 1536140 1536355 -23176724 + AluSq SINE Alu 5 219 -94 467 153 119 0 chrY 1536381 1536544 -23176535 + AluSg/x SINE Alu 176 352 0 893 122 0 7 chrY 1536550 1536698 -23176381 + (GGAA)n Simple_repeat Simple_repeat 3 149 0 1199 271 10 43 chrY 1536721 1537227 -23175852 + L1MC4a LINE L1 3289 3777 -2369 1247 258 54 16 chrY 1537241 1537629 -23175450 + L1MD2 LINE L1 5947 6349 -10 4968 246 58 47 chrY 1537630 1539581 -23173498 + L1MC4a LINE L1 5837 7808 0 451 315 65 6 chrY 1539586 1540013 -23173066 + L1MC4a LINE L1 5189 5639 -525 2067 93 40 0 chrY 1540148 1540426 -23172653 + AluY SINE Alu 1 289 -22 24 0 0 0 chrY 1540429 1540453 -23172626 + AT_rich Low_complexity Low_complexity 1 24 0 298 197 115 41 chrY 1540644 1540766 -23172313 + L1ME4a LINE L1 5991 6121 0 442 263 23 8 chrY 1541569 1541702 -23171377 + L1ME3A LINE L1 5994 6128 -42 351 312 37 28 chrY 1541703 1541918 -23171161 + L1MC4a LINE L1 5814 6030 -1778 189 107 0 0 chrY 1542125 1542153 -23170926 + (TTCTCC)n Simple_repeat Simple_repeat 5 32 0 26 30 0 0 chrY 1543708 1543741 -23169338 + AT_rich Low_complexity Low_complexity 1 33 0 1346 168 4 58 chrY 1543920 1544194 -23168885 + AluJb SINE Alu 33 291 -21 493 276 74 12 chrY 1544616 1544779 -23168300 + MER45A DNA AcHobo 3 175 -3 23 0 0 0 chrY 1545731 1545754 -23167325 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chrY 1546222 1546248 -23166831 + AT_rich Low_complexity Low_complexity 1 26 0 2394 59 0 13 chrY 1546911 1547214 -23165865 + AluY SINE Alu 1 299 -12 320 301 32 26 chrY 1547646 1547802 -23165277 - L1M4 LINE L1 -3793 2353 2197 3877 213 52 20 chrY 1547954 1549064 -23164015 - L1MA9 LINE L1 -30 6282 5137 5935 220 30 37 chrY 1549070 1549353 -23163726 + L1 LINE L1 3414 3697 -2449 360 0 0 0 chrY 1549353 1549393 -23163686 + (CA)n Simple_repeat Simple_repeat 2 41 0 5935 220 30 37 chrY 1549393 1550339 -23162740 + L1 LINE L1 3697 4648 -1498 2507 146 21 14 chrY 1550339 1550764 -23162315 - MSTA LTR MaLR 0 428 1 7794 207 34 8 chrY 1550765 1552372 -23160707 - MSTA-int LTR MaLR -1 1650 2 2403 156 24 14 chrY 1552374 1552797 -23160282 - MSTA LTR MaLR -1 427 1 5935 220 30 37 chrY 1552797 1553291 -23159788 + L1 LINE L1 4649 5131 -1015 416 324 7 7 chrY 1553361 1553503 -23159576 + MIR SINE MIR 95 236 -26 1470 154 110 65 chrY 1553618 1554047 -23159032 + LTR7 LTR ERV1 1 448 -2 4276 120 3 0 chrY 1554276 1554909 -23158170 + L1PA15 LINE L1 5313 5947 -218 2734 66 54 84 chrY 1554909 1555410 -23157669 + LTR21A LTR ERV1 1 486 -19 1244 105 6 0 chrY 1555414 1555585 -23157494 + L1PA15 LINE L1 5948 6119 -46 308 349 28 0 chrY 1555929 1556038 -23157041 + Charlie1 DNA MER1_type 7 118 -2643 3187 188 8 8 chrY 1556054 1556977 -23156102 - L1PA12 LINE L1 -4103 3481 2552 399 103 0 0 chrY 1556983 1557051 -23156028 - MLT2A2 LTR ERVL 0 453 386 37828 97 5 6 chrY 1557051 1562182 -23150897 - HERVL-A2 LTR ERVL -529 5125 1 3154 112 16 0 chrY 1562182 1562628 -23150451 - MLT2A2 LTR ERVL 0 453 1 9292 221 12 12 chrY 1562639 1563183 -23149896 + L1PA15-16 LINE L1 2762 3305 -3544 2126 192 63 58 chrY 1563183 1563734 -23149345 - MLT2B3 LTR ERVL 0 554 1 9292 221 12 12 chrY 1563734 1565414 -23147665 + L1PA15-16 LINE L1 3305 4985 -1864 249 264 0 0 chrY 1566584 1566637 -23146442 - L2 LINE L2 -2323 991 939 4555 303 63 29 chrY 1566734 1567563 -23145516 - L2 LINE L2 -669 2645 1845 2233 154 39 20 chrY 1567563 1568003 -23145076 + LTR7 LTR ERV1 3 450 0 4555 303 63 29 chrY 1568003 1568936 -23144143 - L2 LINE L2 -1469 1845 945 1324 157 80 110 chrY 1568936 1569400 -23143679 + LTR7 LTR ERV1 1 450 0 4555 303 63 29 chrY 1569400 1569439 -23143640 - L2 LINE L2 -2369 945 909 1898 140 51 40 chrY 1569439 1569810 -23143269 - THE1C LTR MaLR 0 375 1 4555 303 63 29 chrY 1569810 1569901 -23143178 - L2 LINE L2 -2405 909 687 1208 231 51 20 chrY 1570156 1570451 -23142628 + MLT1C LTR MaLR 1 304 -163 3518 231 26 22 chrY 1570453 1571448 -23141631 - L1P LINE L1 -2192 3954 2956 1877 199 94 35 chrY 1571450 1571963 -23141116 - L1PA16 LINE L1 0 6166 5624 476 215 65 0 chrY 1572701 1572794 -23140285 + Tigger3b DNA MER2_type 1 99 -1132 4499 182 28 10 chrY 1572798 1573706 -23139373 + Tigger3b DNA MER2_type 277 1200 -31 11424 157 17 38 chrY 1573741 1575211 -23137868 + Tigger1 DNA MER2_type 1 1500 -918 877 209 0 0 chrY 1575211 1575369 -23137710 + FRAM SINE Alu 3 160 -6 11424 157 17 38 chrY 1575369 1575724 -23137355 + Tigger1 DNA MER2_type 1500 1861 -557 423 0 0 0 chrY 1575724 1575771 -23137308 + (TCTCCC)n Simple_repeat Simple_repeat 1 47 0 9646 82 47 2 chrY 1575771 1577035 -23136044 + SVA Other Other 50 1369 -17 208 51 26 26 chrY 1577041 1577080 -23135999 + (TAAAA)n Simple_repeat Simple_repeat 2 40 0 11424 157 17 38 chrY 1577080 1577380 -23135699 + Tigger1 DNA MER2_type 1865 2091 -327 8586 190 18 8 chrY 1577399 1579022 -23134057 + L1MB1 LINE L1 1 1639 -5224 7053 159 53 16 chrY 1579018 1580098 -23132981 + L1PB2 LINE L1 50 1088 -5115 * 2160 94 0 20 chrY 1580098 1580396 -23132683 + AluSg SINE Alu 17 308 -2 7053 159 53 16 chrY 1580396 1581669 -23131410 + L1PB2 LINE L1 1088 2483 -3720 2907 227 13 21 chrY 1581650 1582417 -23130662 + L1PB2 LINE L1 3806 4566 -1637 * 4228 138 22 14 chrY 1582424 1583155 -23129924 + L1PB2 LINE L1 5469 6205 -3 1809 164 6 9 chrY 1583167 1583484 -23129595 + Tigger1 DNA MER2_type 2078 2393 -25 234 341 100 18 chrY 1583774 1583944 -23129135 - MIR SINE MIR -10 252 69 185 179 0 18 chrY 1584220 1584276 -23128803 + T-rich Low_complexity Low_complexity 4 58 0 261 344 80 31 chrY 1584610 1584773 -23128306 + L3b LINE CR1 1303 1473 -110 204 196 0 39 chrY 1585123 1585174 -23127905 + CT-rich Low_complexity Low_complexity 3 51 0 1751 190 128 8 chrY 1585566 1586034 -23127045 - MER69 DNA AcHobo -4 2522 1999 689 274 6 6 chrY 1586020 1586188 -23126891 - MER69 DNA AcHobo -1958 568 401 * 21 0 0 0 chrY 1586958 1586979 -23126100 + AT_rich Low_complexity Low_complexity 1 21 0 2121 108 26 10 chrY 1587675 1587982 -23125097 - AluSx SINE Alu 0 312 1 7995 223 57 8 chrY 1588750 1589849 -23123230 + L1MB1 LINE L1 3781 4825 -2059 324 0 0 0 chrY 1589849 1589885 -23123194 + (CA)n Simple_repeat Simple_repeat 2 37 0 7995 223 57 8 chrY 1589885 1591737 -23121342 + L1MB1 LINE L1 4825 6884 0 562 264 214 0 chrY 1591962 1592121 -23120958 - MIR SINE MIR -69 193 1 438 285 65 0 chrY 1592389 1592512 -23120567 + MIR SINE MIR 117 247 -15 186 341 24 12 chrY 1592580 1592665 -23120414 - L3b LINE CR1 -146 1437 1352 6911 52 17 1 chrY 1593640 1594627 -23118452 + L1PA6 LINE L1 5154 6154 0 343 244 12 12 chrY 1596090 1596176 -23116903 + MER54A LTR ERVL 1 86 -815 * 2176 175 27 3 chrY 1596160 1596532 -23116547 + MER54A LTR ERVL 520 900 -1 4452 111 69 8 chrY 1597116 1597784 -23115295 + THE1B-int LTR MaLR 872 1580 0 2474 121 6 3 chrY 1597784 1598147 -23114932 + THE1B LTR MaLR 1 364 0 198 336 24 11 chrY 1598153 1598241 -23114838 - MIR3 SINE MIR -48 160 71 229 127 84 28 chrY 1598436 1598507 -23114572 + (TAGA)n Simple_repeat Simple_repeat 1 75 0 1540 263 185 4 chrY 1598512 1599025 -23114054 - MLT2F LTR ERVL -57 606 1 315 319 70 32 chrY 1599028 1599185 -23113894 + MIR SINE MIR 72 234 -28 22286 183 23 17 chrY 1599744 1606111 -23106968 + L1PA10 LINE L1 1 6479 -4 21 36 0 0 chrY 1606495 1606523 -23106556 + AT_rich Low_complexity Low_complexity 1 28 0 561 256 28 6 chrY 1606755 1606931 -23106148 - MER104 DNA MER2_type 0 180 1 2058 86 17 7 chrY 1607957 1608247 -23104832 - AluSx SINE Alu -19 293 1 350 314 59 0 chrY 1609440 1609609 -23103470 + HAL1 LINE L1 1087 1265 -1242 33 25 0 0 chrY 1609702 1609742 -23103337 + AT_rich Low_complexity Low_complexity 1 40 0 672 236 78 5 chrY 1609742 1609933 -23103146 - L1PA16 LINE L1 -2 6164 5960 * 4968 193 15 7 chrY 1609924 1611135 -23101944 - L1PBa LINE L1 -2843 4019 2799 4201 95 34 0 chrY 1611147 1611766 -23101313 - L1PBa LINE L1 -4122 2741 2102 9158 238 16 17 chrY 1611780 1615260 -23097819 + L1PA16 LINE L1 2516 5988 -178 686 220 52 0 chrY 1615441 1615614 -23097465 + L1PA16 LINE L1 5985 6166 0 1498 122 0 0 chrY 1615702 1615916 -23097163 + AluSg/x SINE Alu 95 308 -2 1633 233 19 74 chrY 1615918 1616656 -23096423 + L1MC1 LINE L1 2350 3044 -3382 5560 220 39 10 chrY 1616692 1619283 -23093796 + L1MC1 LINE L1 3931 6595 -18 191 309 94 74 chrY 1619511 1619968 -23093111 - L2 LINE L2 -1300 2014 1549 350 0 0 0 chrY 1620643 1620689 -23092390 + AluY SINE Alu 256 301 0 749 247 90 0 chrY 1621554 1621732 -23091347 - MER58A DNA MER1_type -30 194 1 243 277 196 16 chrY 1622345 1622529 -23090550 + L1ME LINE L1 5569 5785 -336 266 305 119 0 chrY 1623115 1623233 -23089846 - MLT1L LTR MaLR -2 613 482 388 294 24 8 chrY 1623317 1623443 -23089636 - MLT1L LTR MaLR -375 240 113 313 209 64 122 chrY 1624375 1624547 -23088532 - HAL1b LINE L1 0 1348 1187 268 301 13 78 chrY 1624964 1625117 -23087962 - MER5B DNA MER1_type -34 144 2 25 31 0 0 chrY 1625458 1625490 -23087589 + AT_rich Low_complexity Low_complexity 1 32 0 267 54 0 0 chrY 1626572 1626609 -23086470 + (TG)n Simple_repeat Simple_repeat 2 38 0 2360 131 16 11 chrY 1626885 1627258 -23085821 - THE1C LTR MaLR 0 375 1 6985 151 14 9 chrY 1627258 1628371 -23084708 - THE1C-int LTR MaLR 0 1580 463 739 219 52 41 chrY 1628371 1628641 -23084438 + pTR5 LTR ERV1 756 1028 -1410 1734 102 198 220 chrY 1628733 1629339 -23083740 + pTR5 LTR ERV1 31 558 -156 2544 136 101 5 chrY 1629341 1629776 -23083303 - THE1C-int LTR MaLR -1103 477 1 2462 112 48 0 chrY 1629776 1630134 -23082945 - THE1C LTR MaLR 0 375 1 230 351 18 9 chrY 1630134 1630245 -23082834 - L2 LINE L2 -1328 1986 1875 1174 157 0 5 chrY 1630578 1630788 -23082291 + L1MA1 LINE L1 6094 6302 0 198 71 0 0 chrY 1630794 1630822 -23082257 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 4339 53 3 2 chrY 1630833 1631415 -23081664 + L1PA5 LINE L1 2954 3536 -2610 14170 49 11 3 chrY 1631417 1633959 -23079120 + L1PA5 LINE L1 3608 6154 0 264 137 0 0 chrY 1635415 1635466 -23077613 + (CAAAAA)n Simple_repeat Simple_repeat 2 52 0 1255 172 159 7 chrY 1635808 1636110 -23076969 + MER58D DNA MER1_type 3 350 -36 3358 64 2 9 chrY 1636145 1636596 -23076483 - LTR7 LTR ERV1 -2 448 1 2389 96 45 13 chrY 1636596 1636972 -23076107 - HERVH LTR ERV1 0 7713 7326 1337 153 19 0 chrY 1636974 1637190 -23075889 - HERVH LTR ERV1 -1894 5819 5600 4298 149 1 1 chrY 1637194 1637853 -23075226 - HERVH LTR ERV1 -2567 5146 4488 3261 124 6 2 chrY 1637855 1638355 -23074724 - HERVH LTR ERV1 -3720 3993 3492 844 162 20 0 chrY 1638345 1638493 -23074586 - HERVH LTR ERV1 -4423 3290 3140 * 16670 107 34 14 chrY 1638487 1641533 -23071546 - HERVH LTR ERV1 -4726 2987 1 3320 60 2 7 chrY 1641535 1641983 -23071096 - LTR7 LTR ERV1 -2 448 3 1526 205 135 29 chrY 1642687 1643130 -23069949 + LTR2B LTR ERV1 1 490 0 5048 135 30 24 chrY 1643264 1644128 -23068951 + MER4D LTR ERV1 4 872 0 2530 214 21 8 chrY 1644411 1644924 -23068155 - MLT2B1 LTR ERVL 0 520 1 375 247 52 81 chrY 1644975 1645149 -23067930 + MIR SINE MIR 69 237 -25 * 626 265 42 11 chrY 1645125 1645314 -23067765 - MIR SINE MIR 0 262 68 315 164 6 218 chrY 1645442 1645607 -23067472 - L1MC5 LINE L1 -998 6963 6834 409 259 40 53 chrY 1645608 1645855 -23067224 + L1MC5 LINE L1 6933 7176 -785 * 417 235 28 88 chrY 1645852 1646069 -23067010 + L1MC5 LINE L1 7128 7331 -630 255 103 0 0 chrY 1646167 1646206 -23066873 + (CA)n Simple_repeat Simple_repeat 2 40 0 640 198 5 64 chrY 1646220 1646422 -23066657 + L1MC5 LINE L1 7716 7905 -56 286 297 51 72 chrY 1647019 1647214 -23065865 - MIR SINE MIR 0 262 72 305 323 108 18 chrY 1647437 1647660 -23065419 + MIR SINE MIR 8 250 -12 466 310 25 39 chrY 1647663 1647866 -23065213 + MIR SINE MIR 60 259 -3 24 0 0 0 chrY 1647873 1647897 -23065182 + AT_rich Low_complexity Low_complexity 1 24 0 299 246 0 0 chrY 1648455 1648520 -23064559 + L1ME4a LINE L1 5518 5582 -539 412 196 0 18 chrY 1648538 1648650 -23064429 + GA-rich Low_complexity Low_complexity 2 111 0 976 100 0 0 chrY 1648688 1648818 -23064261 + AluSq/x SINE Alu 1 130 -183 229 68 45 0 chrY 1648818 1648862 -23064217 + (TA)n Simple_repeat Simple_repeat 2 47 0 25 0 0 0 chrY 1648862 1648887 -23064192 + AT_rich Low_complexity Low_complexity 1 25 0 351 99 78 7 chrY 1648890 1649032 -23064047 + (TA)n Simple_repeat Simple_repeat 2 153 0 1236 125 0 0 chrY 1649032 1649200 -23063879 + AluSp SINE Alu 133 300 -13 301 295 68 32 chrY 1649201 1649239 -23063840 + L1ME4a LINE L1 5609 5644 -477 1744 146 52 73 chrY 1649239 1649622 -23063457 - THE1C LTR MaLR 0 375 1 301 295 68 32 chrY 1649622 1649834 -23063245 + L1ME4a LINE L1 5644 5868 -253 263 256 66 33 chrY 1649877 1649998 -23063081 + L1ME4a LINE L1 5955 6079 -42 219 69 0 0 chrY 1650008 1650037 -23063042 + (TG)n Simple_repeat Simple_repeat 2 30 0 812 261 59 3 chrY 1650573 1650879 -23062200 + L1ME3A LINE L1 5840 6162 -8 27 29 0 0 chrY 1651337 1651371 -23061708 + AT_rich Low_complexity Low_complexity 1 34 0 460 304 94 9 chrY 1651503 1651842 -23061237 + LTR37A LTR ERV1 38 405 -21 372 211 164 20 chrY 1651861 1652013 -23061066 - L1ME4a LINE L1 -235 5886 5713 216 248 90 113 chrY 1652041 1652174 -23060905 + L2 LINE L2 3183 3312 -1 497 295 96 46 chrY 1652205 1652754 -23060325 + L1ME4a LINE L1 5437 6015 -106 1066 175 19 19 chrY 1652891 1653097 -23059982 + MER34 LTR ERV1 1 206 -336 545 133 211 39 chrY 1653099 1653227 -23059852 - MER66A-int LTR ERV1 -1969 4707 4558 410 221 23 23 chrY 1653228 1653314 -23059765 - MER4D LTR ERV1 -744 159 74 1127 169 0 101 chrY 1653317 1653595 -23059484 - MER66A-int LTR ERV1 -2246 4430 4181 541 169 108 97 chrY 1653616 1653811 -23059268 - MER66A-int LTR ERV1 -5452 1224 1028 2067 241 96 87 chrY 1653846 1654713 -23058366 - MER66A-int LTR ERV1 -5799 877 3 1352 206 159 37 chrY 1654716 1655159 -23057920 - MER66A LTR ERV1 0 478 97 559 157 9 61 chrY 1655246 1655361 -23057718 + MER34 LTR ERV1 431 539 -3 2616 135 8 8 chrY 1655556 1656215 -23056864 + MER34-int LTR ERV1 106 806 -6731 1605 189 4 0 chrY 1656208 1656472 -23056607 + MER57A-int LTR ERV1 361 625 -5321 * 21339 133 13 22 chrY 1656463 1660031 -23053048 + MER57A-int LTR ERV1 1705 5238 -2299 4703 137 7 0 chrY 1660025 1660735 -23052344 + MER57A-int LTR ERV1 6432 7146 -391 * 652 154 32 8 chrY 1660737 1660860 -23052219 + LTR54B LTR ERV1 3 128 -370 1436 112 125 0 chrY 1660860 1661092 -23051987 + MER57A-int LTR ERV1 7272 7532 -5 2173 178 13 0 chrY 1661096 1661494 -23051585 + MER57A LTR ERV1 1 403 0 599 311 0 24 chrY 1662247 1662414 -23050665 + MIR SINE MIR 44 206 -56 2304 192 70 2 chrY 1662510 1663011 -23050068 - MER34C LTR ERV1 -46 539 5 3381 167 25 76 chrY 1663015 1663032 -23050047 - L1MC1 LINE L1 -181 6152 6136 2303 141 11 8 chrY 1663032 1663395 -23049684 - THE1B LTR MaLR 0 364 1 3381 167 25 76 chrY 1663395 1663741 -23049338 - L1MC1 LINE L1 -197 6136 5844 2014 156 10 0 chrY 1663741 1664048 -23049031 - AluSx SINE Alu -2 310 1 3381 167 25 76 chrY 1664048 1664431 -23048648 - L1MC1 LINE L1 -489 5844 5443 2154 220 34 51 chrY 1664644 1665171 -23047908 + MER73 LTR ERVL 127 644 0 389 244 35 12 chrY 1665189 1665361 -23047718 + (TA)n Simple_repeat Simple_repeat 1 176 0 187 317 0 0 chrY 1665450 1665491 -23047588 + L2 LINE L2 3251 3291 -22 21 36 0 0 chrY 1666338 1666366 -23046713 + AT_rich Low_complexity Low_complexity 1 28 0 182 341 61 37 chrY 1666950 1667032 -23046047 + MIR SINE MIR 58 141 -67 32 26 0 0 chrY 1667363 1667402 -23045677 + AT_rich Low_complexity Low_complexity 1 39 0 244 246 14 35 chrY 1667563 1667705 -23045374 + (TATAA)n Simple_repeat Simple_repeat 1 139 0 * 301 219 59 6 chrY 1667680 1667906 -23045173 + (TA)n Simple_repeat Simple_repeat 1 238 0 47 0 0 0 chrY 1667918 1667965 -23045114 + AT_rich Low_complexity Low_complexity 1 47 0 1176 158 19 10 chrY 1668009 1668218 -23044861 - MER61A LTR ERV1 0 343 133 4427 207 43 3 chrY 1668218 1669164 -23043915 - L1PA12 LINE L1 -3490 4094 3111 4917 266 32 36 chrY 1669177 1671174 -23041905 - L1PA12 LINE L1 -4643 2938 528 3164 178 4 2 chrY 1671177 1671678 -23041401 - L1PA12 LINE L1 -7077 504 3 553 161 0 11 chrY 1671879 1671972 -23041107 + LTR59 LTR ERV1 1 92 -505 1772 177 0 19 chrY 1671973 1672283 -23040796 + MER72 LTR ERV1 155 458 -264 1004 201 80 0 chrY 1672283 1672549 -23040530 - L1M2 LINE L1 -753 5393 5150 2065 203 30 14 chrY 1672552 1672990 -23040089 + L1MB1 LINE L1 5655 6099 -69 921 207 23 54 chrY 1672990 1673302 -23039777 - MER2 DNA MER2_type 0 345 2 414 136 0 62 chrY 1673303 1673384 -23039695 + L1MB1 LINE L1 6098 6173 -16 1746 272 90 140 chrY 1673385 1674392 -23038687 - L2 LINE L2 -137 3176 2257 241 254 60 15 chrY 1674392 1674459 -23038620 + MER112 DNA MER1_type 2 71 -189 1746 272 90 140 chrY 1674459 1675445 -23037634 - L2 LINE L2 -1056 2257 1223 2322 91 3 0 chrY 1675751 1676048 -23037031 + AluSc SINE Alu 1 298 -11 308 250 12 12 chrY 1676672 1676752 -23036327 - MIR SINE MIR -71 191 112 26 0 0 0 chrY 1677299 1677325 -23035754 + AT_rich Low_complexity Low_complexity 1 26 0 401 312 53 11 chrY 1677425 1677614 -23035465 + L1ME4a LINE L1 5631 5827 -294 6931 213 14 23 chrY 1677700 1679485 -23033594 + L1M1 LINE L1 15 1776 -5789 2140 229 53 9 chrY 1679486 1680067 -23033012 - L1M4 LINE L1 -745 5637 5031 1056 229 40 112 chrY 1680068 1680469 -23032610 + MLT1A2 LTR MaLR 3 374 0 2225 229 36 0 chrY 1680469 1680972 -23032107 + MLT1A2-int LTR MaLR 1 521 -1214 6107 105 7 24 chrY 1680992 1682895 -23030184 - L1PA10 LINE L1 0 6168 4268 4247 88 2 4 chrY 1682895 1683451 -23029628 + HERVL LTR ERVL 2401 2955 -2699 1692 96 0 0 chrY 1683451 1683670 -23029409 + MLT2A1 LTR ERVL 145 363 -81 549 0 0 0 chrY 1683671 1683732 -23029347 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 281 0 108 0 chrY 1683732 1683769 -23029310 + MLT2A1 LTR ERVL 404 444 0 470 134 24 0 chrY 1683769 1683851 -23029228 - L1PA10 LINE L1 -1873 4273 4190 1640 213 0 16 chrY 1683873 1684183 -23028896 + AluJo SINE Alu 3 307 -5 451 280 0 89 chrY 1684191 1684359 -23028720 + MLT1A2-int LTR MaLR 555 707 -664 1872 261 30 54 chrY 1684563 1685188 -23027891 + MLT1A2-int LTR MaLR 1126 1735 0 528 276 47 12 chrY 1685188 1685358 -23027721 + MLT1A2 LTR MaLR 1 176 -189 1027 234 28 3 chrY 1685369 1685690 -23027389 - L1M4 LINE L1 -1542 4840 4512 207 0 0 0 chrY 1685703 1685726 -23027353 + (TG)n Simple_repeat Simple_repeat 2 24 0 2968 256 84 46 chrY 1685769 1686760 -23026319 - L1M4 LINE L1 -3344 3038 2085 1649 203 102 2 chrY 1686760 1687154 -23025925 - Tigger2a DNA MER2_type -1 433 1 2968 256 84 46 chrY 1687154 1687325 -23025754 - L1M4 LINE L1 -4297 2085 1922 1562 239 10 32 chrY 1687325 1687553 -23025526 - MSTD LTR MaLR -4 392 175 2388 76 0 13 chrY 1687553 1687688 -23025391 + AluY SINE Alu 1 136 -175 2552 67 0 3 chrY 1687688 1688000 -23025079 + AluY SINE Alu 1 311 0 2388 76 0 13 chrY 1688000 1688168 -23024911 + AluY SINE Alu 136 300 -11 1562 239 10 32 chrY 1688168 1688340 -23024739 - MSTD LTR MaLR -221 175 1 2968 256 84 46 chrY 1688340 1688878 -23024201 - L1M4 LINE L1 -4460 1922 1405 1906 230 47 5 chrY 1688878 1689287 -23023792 + MSTB LTR MaLR 1 426 0 2968 256 84 46 chrY 1689287 1689740 -23023339 - L1M4 LINE L1 -4977 1405 813 2792 13 0 0 chrY 1689913 1690221 -23022858 - AluYb8 SINE Alu -10 308 1 444 108 0 0 chrY 1690746 1690811 -23022268 - AluJ/FLAM SINE Alu -247 65 1 7496 233 25 15 chrY 1690815 1692442 -23020637 - L1P LINE L1 -825 5321 3672 258 81 0 0 chrY 1692442 1692479 -23020600 + (TG)n Simple_repeat Simple_repeat 2 38 0 7496 233 25 15 chrY 1692479 1692797 -23020282 - L1P LINE L1 -2474 3672 3358 31 0 0 0 chrY 1695054 1695085 -23017994 + AT_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chrY 1695102 1695126 -23017953 + AT_rich Low_complexity Low_complexity 1 24 0 336 143 0 0 chrY 1695261 1695317 -23017762 + (CA)n Simple_repeat Simple_repeat 1 56 0 1065 222 60 4 chrY 1695336 1695584 -23017495 - MLT2C1 LTR ERVL -48 349 88 21 0 0 0 chrY 1696548 1696569 -23016510 + AT_rich Low_complexity Low_complexity 1 21 0 816 267 0 42 chrY 1696645 1696836 -23016243 - MER5A DNA MER1_type 0 189 7 400 257 0 50 chrY 1696946 1697047 -23016032 - MER5B DNA MER1_type 0 178 83 6637 83 24 0 chrY 1697049 1698016 -23015063 - L1PA8 LINE L1 -7 6165 5192 7809 124 6 0 chrY 1698020 1699233 -23013846 + L1PA8 LINE L1 3985 5204 -942 42758 53 3 1 chrY 1699400 1705538 -23007541 + L1PA4 LINE L1 1 6152 -3 12615 188 40 7 chrY 1706007 1712191 -23000888 - L1PB2 LINE L1 -7 6860 472 313 282 0 24 chrY 1712197 1712282 -23000797 - MER20 DNA MER1_type -57 162 80 1990 152 3 7 chrY 1712949 1713252 -22999827 + AluSx SINE Alu 1 302 -10 1514 217 3 20 chrY 1713666 1713966 -22999113 + AluJo SINE Alu 3 297 -15 1858 152 40 37 chrY 1713991 1714365 -22998714 - THE1C LTR MaLR 0 375 1 3797 213 30 11 chrY 1714702 1715836 -22997243 - L1PB4 LINE L1 -2 7216 6057 1894 231 14 19 chrY 1715839 1716255 -22996824 + MSTB LTR MaLR 3 416 -10 3086 230 35 5 chrY 1716263 1717214 -22995865 - L1PB4 LINE L1 -1153 6055 5045 * 3741 258 18 43 chrY 1717185 1717684 -22995395 - L1PB4 LINE L1 -2834 4374 3864 7260 45 28 0 chrY 1717684 1718557 -22994522 + MER11D LTR ERVK 1 897 0 3741 258 18 43 chrY 1718557 1718626 -22994453 - L1PB4 LINE L1 -3344 3864 3795 2322 95 3 0 chrY 1718626 1718922 -22994157 + AluSp SINE Alu 1 297 -16 3741 258 18 43 chrY 1718922 1720028 -22993051 - L1PB4 LINE L1 -3413 3795 2789 949 145 22 112 chrY 1720030 1720209 -22992870 + MSTA LTR MaLR 1 163 -263 542 211 0 0 chrY 1770232 1770346 -22942733 - L1 LINE L1 -3599 3609 3496 26 0 0 0 chrY 1770346 1770372 -22942707 + AT_rich Low_complexity Low_complexity 1 26 0 1247 183 35 0 chrY 1770372 1770601 -22942478 + MSTA LTR MaLR 192 428 0 5976 186 15 32 chrY 1770645 1771819 -22941260 + MSTA-int LTR MaLR 427 1580 0 2603 172 19 9 chrY 1771819 1772243 -22940836 + MSTA LTR MaLR 1 428 0 2674 251 24 19 chrY 1772243 1773119 -22939960 - L1PB4 LINE L1 -4506 2703 1824 603 378 26 48 chrY 1773127 1773585 -22939494 - L1PB4 LINE L1 -5602 1607 1160 1840 320 60 9 chrY 1774211 1774905 -22938174 - L1PB4 LINE L1 -6476 733 4 352 289 78 35 chrY 1774940 1775172 -22937907 - L1ME LINE L1 -342 5779 5538 370 343 34 34 chrY 1775541 1775777 -22937302 - LTR16C LTR ERVL -4 487 252 21251 172 14 19 chrY 1777792 1781695 -22931384 + L1PA10 LINE L1 6 3926 -2557 3667 174 62 30 chrY 1781695 1782450 -22930629 + LTR19C LTR ERV1 1 779 0 21251 172 14 19 chrY 1782450 1782600 -22930479 + L1PA10 LINE L1 3926 4075 -2408 2124 135 48 25 chrY 1782600 1782956 -22930123 + THE1B LTR MaLR 1 364 0 10082 117 28 12 chrY 1782956 1784511 -22928568 + THE1B-int LTR MaLR 1 1580 0 1849 158 47 44 chrY 1784512 1784874 -22928205 + THE1B LTR MaLR 2 364 0 21251 172 14 19 chrY 1784874 1787306 -22925773 + L1PA10 LINE L1 4073 6472 -11 25 31 0 0 chrY 1787556 1787588 -22925491 + AT_rich Low_complexity Low_complexity 1 32 0 2651 283 53 52 chrY 1787828 1788564 -22924515 - L1MEc LINE L1 -2172 4043 3309 1994 112 4 0 chrY 1788564 1788880 -22924199 - AluSq SINE Alu 0 323 7 2651 283 53 52 chrY 1788880 1790529 -22922550 - L1MEc LINE L1 -2906 3309 1686 8895 202 20 32 chrY 1790647 1791472 -22921607 - L1PA15 LINE L1 -12 6153 5320 2212 78 0 3 chrY 1791472 1791811 -22921268 - AluY SINE Alu 0 338 1 8895 202 20 32 chrY 1791811 1794079 -22919000 - L1PA15 LINE L1 -845 5320 3061 7768 66 4 12 chrY 1794079 1795099 -22917980 + MER11C LTR ERVK 1 1012 -59 385 319 42 7 chrY 1797011 1797155 -22915924 + MIR SINE MIR 3 151 -111 250 328 93 49 chrY 1797446 1797693 -22915386 + LTR16B LTR ERVL 57 314 -150 1598 306 20 30 chrY 1798585 1799124 -22913955 + HERV16 LTR ERVL 894 1427 -3569 280 254 34 0 chrY 1799174 1799292 -22913787 + (TA)n Simple_repeat Simple_repeat 1 122 0 1905 142 16 13 chrY 1799414 1799725 -22913354 - AluJb SINE Alu 0 312 1 16272 190 52 10 chrY 1801823 1809200 -22903879 - L1MA2 LINE L1 -19 7704 12 2206 119 0 3 chrY 1809277 1809587 -22903492 - AluSx SINE Alu -2 310 2 1220 188 164 21 chrY 1809862 1810149 -22902930 - MLT1A1 LTR MaLR -32 333 6 846 240 23 46 chrY 1810273 1810490 -22902589 + MIR SINE MIR 36 247 -15 3392 64 9 0 chrY 1810615 1811055 -22902024 + L1PA7 LINE L1 5711 6154 0 24 0 0 0 chrY 1811091 1811115 -22901964 + AT_rich Low_complexity Low_complexity 1 24 0 207 0 0 0 chrY 1811117 1811140 -22901939 + (TAAAAA)n Simple_repeat Simple_repeat 1 23 0 27 29 0 0 chrY 1811784 1811818 -22901261 + AT_rich Low_complexity Low_complexity 1 34 0 1706 129 5 74 chrY 1812128 1812499 -22900580 - MER4A LTR ERV1 0 664 261 551 134 21 10 chrY 1812499 1812596 -22900483 - MER4A LTR ERV1 -566 98 1 226 263 63 63 chrY 1813963 1814058 -22899021 + MIR SINE MIR 51 145 -63 312 361 0 13 chrY 1814226 1814384 -22898695 + MER117 DNA MER1_type 11 166 -31 387 359 128 24 chrY 1815126 1815272 -22897807 + L2 LINE L2 1811 1940 -1374 2275 140 146 91 chrY 1815272 1815901 -22897178 + MER4A LTR ERV1 1 664 0 387 359 128 24 chrY 1815901 1816175 -22896904 + L2 LINE L2 1940 2275 -1039 2604 99 19 140 chrY 1816913 1817428 -22895651 + MLT2A2 LTR ERVL 1 453 0 2045 300 25 16 chrY 1817725 1818396 -22894683 + L2 LINE L2 2035 2711 -603 682 218 21 0 chrY 1818534 1818676 -22894403 - MLT2A2 LTR ERVL 0 453 309 311 286 17 34 chrY 1819385 1819563 -22893516 - L1M4 LINE L1 -866 5280 5106 4579 56 8 7 chrY 1820442 1821032 -22892047 - LTR10C LTR ERV1 0 591 1 250 183 28 0 chrY 1821349 1821420 -22891659 + (CA)n Simple_repeat Simple_repeat 2 74 0 502 283 97 37 chrY 1822839 1823248 -22889831 - MLT1L LTR MaLR -7 608 109 1509 202 46 0 chrY 1823323 1823440 -22889639 + AluJb SINE Alu 4 114 -198 180 0 0 0 chrY 1823440 1823460 -22889619 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 1509 202 46 0 chrY 1823460 1823624 -22889455 + AluJb SINE Alu 114 298 -14 33 43 0 0 chrY 1824428 1824475 -22888604 + AT_rich Low_complexity Low_complexity 1 47 0 212 220 0 20 chrY 1825359 1825409 -22887670 + (TA)n Simple_repeat Simple_repeat 2 50 0 715 164 176 4 chrY 1825409 1825574 -22887505 + MLT1B LTR MaLR 2 179 -195 789 283 64 32 chrY 1825586 1826118 -22886961 - MLT1G1 LTR MaLR 0 595 4 1627 144 186 45 chrY 1827436 1827790 -22885289 - MER4A LTR ERV1 0 664 261 693 91 0 10 chrY 1827790 1827889 -22885190 - MER4A LTR ERV1 -566 98 1 28 48 0 0 chrY 1828262 1828304 -22884775 + AT_rich Low_complexity Low_complexity 1 42 0 393 176 0 12 chrY 1828455 1828540 -22884539 - pTR5 LTR ERV1 -1237 1201 1118 4901 109 28 65 chrY 1828697 1829550 -22883529 + LTR12 LTR ERV1 5 826 0 2908 187 34 5 chrY 1829550 1830170 -22882909 + L1P LINE L1 4721 5361 -785 * 3823 247 46 3 chrY 1830169 1831222 -22881857 - L1PA13 LINE L1 -4413 2384 1278 1385 245 55 54 chrY 1831259 1831962 -22881117 - L1M4c LINE L1 -2465 3917 3214 316 286 9 19 chrY 1831963 1832068 -22881011 - L1M4c LINE L1 -4279 2105 2002 3014 258 55 38 chrY 1832072 1833268 -22879811 - L1M4c LINE L1 -4497 1887 665 1983 212 52 50 chrY 1833268 1833312 -22879767 - MLT2B1 LTR ERVL 0 520 478 351 0 0 0 chrY 1833312 1833351 -22879728 + (CA)n Simple_repeat Simple_repeat 2 40 0 1983 212 52 50 chrY 1833351 1833825 -22879254 - MLT2B1 LTR ERVL -42 478 1 3014 258 55 38 chrY 1833825 1833955 -22879124 - L1M4c LINE L1 -5719 665 539 1188 148 0 0 chrY 1834457 1834633 -22878446 + AluSq SINE Alu 38 213 -100 357 301 161 16 chrY 1834968 1835161 -22877918 - MIR SINE MIR 0 262 42 317 314 57 21 chrY 1835530 1835670 -22877409 + MIR SINE MIR 31 175 -87 553 268 11 112 chrY 1835689 1835965 -22877114 + MER21B LTR ERV1 1 248 -615 399 159 0 0 chrY 1835970 1836039 -22877040 + L1MA5 LINE L1 6147 6215 -85 1147 259 71 69 chrY 1836039 1836310 -22876769 + MER21B LTR ERV1 253 527 -336 2090 136 3 0 chrY 1836310 1836619 -22876460 - AluSx SINE Alu -2 310 1 1147 259 71 69 chrY 1836619 1836852 -22876227 + MER21B LTR ERV1 527 758 -105 2167 121 3 6 chrY 1838125 1838438 -22874641 - AluSx SINE Alu 0 312 1 1762 117 4 0 chrY 1839021 1839277 -22873802 + AluSp SINE Alu 53 309 -4 4026 188 47 12 chrY 1839456 1839918 -22873161 - L1PA16 LINE L1 -12 6154 5647 2216 110 0 0 chrY 1839918 1840208 -22872871 + AluSq SINE Alu 1 290 -23 4026 188 47 12 chrY 1840208 1840589 -22872490 - L1PA16 LINE L1 -519 5647 5281 509 173 0 0 chrY 1840589 1840693 -22872386 + L1PA16 LINE L1 5174 5277 -869 318 78 20 20 chrY 1840714 1840765 -22872314 + MER4A LTR ERV1 48 98 -566 1469 152 16 80 chrY 1840765 1841073 -22872006 + MER4A LTR ERV1 261 602 -62 1933 110 55 14 chrY 1841073 1841364 -22871715 - AluSc SINE Alu -6 303 1 1469 152 16 80 chrY 1841364 1841424 -22871655 + MER4A LTR ERV1 602 664 0 1773 312 24 17 chrY 1841424 1841701 -22871378 - L1PA12 LINE L1 -4651 2930 2656 3201 74 2 22 chrY 1841701 1842158 -22870921 - LTR7 LTR ERV1 -2 448 1 1773 312 24 17 chrY 1842158 1842627 -22870452 - L1PA12 LINE L1 -4925 2656 2179 2340 55 3 10 chrY 1842916 1843209 -22869870 - AluY SINE Alu -20 291 1 448 299 86 11 chrY 1843399 1843573 -22869506 + L2 LINE L2 3094 3280 -33 611 268 85 0 chrY 1843864 1844017 -22869062 - MER5B DNA MER1_type -12 166 1 2828 216 76 6 chrY 1844071 1844269 -22868810 - L1MB7 LINE L1 -8 6176 5993 183 42 0 0 chrY 1844269 1844293 -22868786 + (TTG)n Simple_repeat Simple_repeat 1 24 0 2828 216 76 6 chrY 1844293 1844788 -22868291 - L1MB7 LINE L1 -191 5993 5434 2276 116 0 0 chrY 1845278 1845588 -22867491 + AluSg SINE Alu 1 310 0 447 206 131 0 chrY 1845698 1845805 -22867274 - L1PA15 LINE L1 -4 6161 6041 1833 148 70 25 chrY 1845807 1846164 -22866915 - THE1C LTR MaLR 0 375 3 1988 103 6 29 chrY 1846164 1846476 -22866603 - THE1C-int LTR MaLR -1 1579 1275 5791 115 10 18 chrY 1846484 1847940 -22865139 - L1PA11 LINE L1 -1 6173 4703 5059 149 5 2 chrY 1847940 1848783 -22864296 + L1PA11 LINE L1 3837 4681 -1465 2523 160 10 0 chrY 1848792 1849199 -22863880 - THE1C-int LTR MaLR -303 1277 867 492 176 46 9 chrY 1849204 1849312 -22863767 + MSTB1-int LTR MaLR 1539 1650 -1 1834 175 108 5 chrY 1849316 1849705 -22863374 + MSTB1 LTR MaLR 4 432 0 520 246 0 0 chrY 1849709 1849823 -22863256 + MER77 LTR ERV1 426 539 -66 1162 254 73 51 chrY 1849886 1850484 -22862595 + L1MC4 LINE L1 6458 7089 -953 4348 163 25 6 chrY 1850603 1851407 -22861672 - L1PB2 LINE L1 0 6151 5333 603 122 10 10 chrY 1851407 1851505 -22861574 + MER4A LTR ERV1 1 98 -566 1310 155 47 46 chrY 1851505 1851846 -22861233 + MER4A LTR ERV1 261 660 -4 9320 137 139 60 chrY 1851852 1854400 -22858679 + MER4A-int LTR ERV1 1 2485 -4113 5593 134 55 17 chrY 1854396 1855391 -22857688 + MER4A-int LTR ERV1 5516 6548 -50 * 405 0 0 0 chrY 1855391 1855436 -22857643 + (A)n Simple_repeat Simple_repeat 1 45 0 496 188 10 10 chrY 1855469 1855565 -22857514 + MER4A LTR ERV1 1 96 -568 1846 144 3 24 chrY 1855567 1855920 -22857159 + MER4A LTR ERV1 261 664 0 837 232 0 5 chrY 1855927 1856151 -22856928 - L1PB2 LINE L1 -817 5329 5107 1611 193 174 0 chrY 1856158 1856266 -22856813 + MSTA LTR MaLR 1 89 -339 287 25 25 0 chrY 1856266 1856306 -22856773 + (TGAG)n Simple_repeat Simple_repeat 3 43 0 1611 193 174 0 chrY 1856306 1856560 -22856519 + MSTA LTR MaLR 89 426 -2 6212 213 36 15 chrY 1856562 1856644 -22856435 + MSTA-int LTR MaLR 1 80 -1571 2365 89 0 3 chrY 1856644 1856946 -22856133 + AluY SINE Alu 2 302 -9 6212 213 36 15 chrY 1856946 1858150 -22854929 + MSTA-int LTR MaLR 80 1314 -337 5098 73 0 12 chrY 1858150 1858806 -22854273 - LTR17 LTR ERV1 0 780 133 2060 143 6 23 chrY 1858806 1859022 -22854057 + MSTA-int LTR MaLR 1316 1525 -126 2413 108 128 5 chrY 1859022 1859421 -22853658 - LTR7 LTR ERV1 -2 448 1 2060 143 6 23 chrY 1859421 1859546 -22853533 + MSTA-int LTR MaLR 1525 1651 0 2208 182 39 0 chrY 1859546 1859958 -22853121 + MSTA LTR MaLR 1 428 0 8202 234 24 37 chrY 1859975 1860149 -22852930 - L1PB2 LINE L1 -1059 5087 4912 2142 136 0 3 chrY 1860149 1860459 -22852620 - AluSx SINE Alu -1 311 3 8202 234 24 37 chrY 1860459 1860911 -22852168 - L1PB2 LINE L1 -1234 4912 4456 1984 148 0 0 chrY 1860911 1861216 -22851863 - AluY SINE Alu -6 305 1 8202 234 24 37 chrY 1861216 1863087 -22849992 - L1PB2 LINE L1 -1690 4456 2622 320 234 47 19 chrY 1863617 1863724 -22849355 + LTR43 LTR ERV1 187 296 -306 9873 270 29 33 chrY 1863780 1867142 -22845937 + L1PA13 LINE L1 1 3358 -4226 11623 213 8 29 chrY 1867142 1869387 -22843692 + L1PA13 LINE L1 3953 6179 -1422 183 42 0 0 chrY 1869387 1869411 -22843668 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 11623 213 8 29 chrY 1869411 1870805 -22842274 + L1PA13 LINE L1 6179 7601 0 9873 270 29 33 chrY 1870805 1870817 -22842262 + L1PA13 LINE L1 3358 3369 -4215 2138 74 30 17 chrY 1871727 1872026 -22841053 + AluY SINE Alu 1 303 -8 1461 277 103 15 chrY 1873121 1873731 -22839348 - L1MC4 LINE L1 -132 7910 7247 1211 258 16 0 chrY 1873740 1874058 -22839021 - L1MC4 LINE L1 -953 7089 6767 341 257 56 23 chrY 1874059 1874187 -22838892 - L1MD3 LINE L1 -1431 6564 6446 1659 254 39 34 chrY 1874806 1875449 -22837630 + L1MC4 LINE L1 7265 7910 -132 231 183 33 0 chrY 1875452 1875554 -22837525 + (TA)n Simple_repeat Simple_repeat 1 105 0 33 56 0 0 chrY 1875629 1875683 -22837396 + AT_rich Low_complexity Low_complexity 1 54 0 4699 127 21 3 chrY 1875741 1876496 -22836583 + L1MA2 LINE L1 5535 6303 -1 232 385 58 0 chrY 1876506 1876662 -22836417 - L3b LINE CR1 -202 1381 1217 33 43 0 0 chrY 1876745 1876792 -22836287 + AT_rich Low_complexity Low_complexity 1 47 0 50 18 0 0 chrY 1876906 1876963 -22836116 + AT_rich Low_complexity Low_complexity 1 57 0 2504 53 3 7 chrY 1877276 1877578 -22835501 - AluSp SINE Alu -12 301 1 205 162 0 0 chrY 1877608 1877645 -22835434 + (TG)n Simple_repeat Simple_repeat 2 38 0 319 260 57 8 chrY 1878108 1878231 -22834848 - HAL1b LINE L1 -11 1337 1209 308 312 72 51 chrY 1878330 1878622 -22834457 - L1MD3 LINE L1 -1897 5911 5614 21 0 0 0 chrY 1879377 1879398 -22833681 + AT_rich Low_complexity Low_complexity 1 21 0 2202 107 0 3 chrY 1879693 1879993 -22833086 + AluSx SINE Alu 1 299 -13 188 111 28 0 chrY 1880250 1880286 -22832793 + T-rich Low_complexity Low_complexity 2 38 0 272 172 0 16 chrY 1880286 1880350 -22832729 + CT-rich Low_complexity Low_complexity 2 64 0 238 250 36 77 chrY 1880632 1880723 -22832356 - L1MEd LINE L1 -4917 1202 1120 1933 169 14 14 chrY 1880723 1881071 -22832008 + MER7A DNA MER2_type 1 346 0 238 250 36 77 chrY 1881071 1881147 -22831932 - L1MEd LINE L1 -4999 1120 1042 2206 98 7 0 chrY 1881169 1881464 -22831615 - AluSp SINE Alu -16 297 1 286 224 0 24 chrY 1881482 1881567 -22831512 + (TCTA)n Simple_repeat Simple_repeat 4 86 0 272 211 11 106 chrY 1881649 1881829 -22831250 - L1MEd LINE L1 -5188 931 769 722 104 157 0 chrY 1881889 1882004 -22831075 - AluSq/x SINE Alu -180 133 1 658 79 0 0 chrY 1882609 1882698 -22830381 - L1PBa LINE L1 -4657 2206 2118 * 15163 145 22 90 chrY 1882696 1886093 -22826986 - L1P LINE L1 -2969 3177 12 21 0 0 0 chrY 1886239 1886260 -22826819 + AT_rich Low_complexity Low_complexity 1 21 0 5337 169 22 20 chrY 1886261 1886926 -22826153 - L1MA5A LINE L1 -4 6293 5624 1692 153 0 0 chrY 1886926 1887174 -22825905 - AluSq SINE Alu -65 248 1 5337 169 22 20 chrY 1887174 1887535 -22825544 - L1MA5A LINE L1 -673 5624 5265 3089 172 24 15 chrY 1887548 1888218 -22824861 - L1MA5A LINE L1 -1129 5017 4342 21 0 0 0 chrY 1888269 1888290 -22824789 + AT_rich Low_complexity Low_complexity 1 21 0 29847 112 16 47 chrY 1889608 1895553 -22817526 + L1P3 LINE L1 1 5763 -706 569 171 0 18 chrY 1895585 1895696 -22817383 - L1MD3 LINE L1 -999 6996 6888 365 136 15 0 chrY 1895697 1895763 -22817316 + CT-rich Low_complexity Low_complexity 4 70 0 302 258 100 68 chrY 1895763 1895953 -22817126 - L1MC3 LINE L1 -1107 6678 6483 2986 268 57 36 chrY 1895964 1898184 -22814895 - L1MC3 LINE L1 -743 5403 4017 442 184 68 60 chrY 1898357 1898526 -22814553 - L1ME LINE L1 -642 5522 5345 5330 104 8 5 chrY 1900441 1901219 -22811860 + L1PA10 LINE L1 5389 6168 0 21 0 0 0 chrY 1901272 1901293 -22811786 + AT_rich Low_complexity Low_complexity 1 21 0 2260 192 66 25 chrY 1901827 1902420 -22810659 + pTR5 LTR ERV1 729 1345 -1093 4558 111 21 117 chrY 1902435 1903344 -22809735 + LTR12 LTR ERV1 5 826 0 25 90 0 0 chrY 1903728 1903795 -22809284 + AT_rich Low_complexity Low_complexity 1 67 0 25 31 0 0 chrY 1904987 1905019 -22808060 + AT_rich Low_complexity Low_complexity 1 32 0 21 57 0 0 chrY 1906559 1906594 -22806485 + AT_rich Low_complexity Low_complexity 1 35 0 271 300 33 50 chrY 1906784 1906904 -22806175 + MER77 LTR ERV1 68 185 -420 593 241 33 71 chrY 1906949 1907166 -22805913 + MER21B LTR ERV1 142 354 -251 2688 138 37 16 chrY 1907166 1907754 -22805325 + MER4B LTR ERV1 1 779 0 5758 136 92 37 chrY 1907754 1908400 -22804679 + MER4B-int LTR ERV1 1 734 -6024 7403 145 16 25 chrY 1908400 1909687 -22803392 - MER52C LTR ERV1 -2 1276 1 5758 136 92 37 chrY 1909687 1910132 -22802947 + MER4B-int LTR ERV1 734 1153 -5605 294 73 0 0 chrY 1910135 1910176 -22802903 + (TG)n Simple_repeat Simple_repeat 2 42 0 3185 106 70 42 chrY 1910181 1910659 -22802420 + MER4B-int LTR ERV1 1458 1921 -4677 2677 93 3 0 chrY 1910659 1911013 -22802066 - THE1A LTR MaLR 0 355 1 3185 106 70 42 chrY 1911013 1911656 -22801423 + MER4B-int LTR ERV1 1921 2482 -4116 1682 145 5 77 chrY 1911656 1912028 -22801051 - MER4A LTR ERV1 0 664 261 594 113 21 10 chrY 1912028 1912125 -22800954 - MER4A LTR ERV1 -566 98 1 4357 124 45 13 chrY 1912126 1912876 -22800203 - MER4A-int LTR ERV1 0 6598 5825 311 185 0 0 chrY 1912905 1912959 -22800120 - L1PA8A LINE L1 -3 6128 6075 3269 209 31 7 chrY 1912962 1913557 -22799522 - L1MB2 LINE L1 -67 6104 5488 2242 101 6 19 chrY 1913557 1913873 -22799206 - AluSq SINE Alu -1 312 1 3269 209 31 7 chrY 1913873 1913994 -22799085 - L1MB2 LINE L1 -683 5488 5371 26 64 0 0 chrY 1914294 1914341 -22798738 + AT_rich Low_complexity Low_complexity 1 47 0 860 194 196 60 chrY 1914341 1914708 -22798371 + MSTC LTR MaLR 1 417 -11 1333 207 97 20 chrY 1914796 1915096 -22797983 - MLT1A1 LTR MaLR -42 323 1 1896 235 10 2 chrY 1915100 1915509 -22797570 - MLT1A1-int LTR MaLR -5 1730 1319 230 296 70 92 chrY 1915588 1915730 -22797349 - MLT1A1-int LTR MaLR -397 1338 1200 733 233 75 46 chrY 1915730 1915970 -22797109 + MLT1A1 LTR MaLR 119 365 0 2961 228 24 31 chrY 1916118 1916372 -22796707 - L1MB3 LINE L1 -2 6181 5927 5390 67 32 8 chrY 1916372 1917120 -22795959 + MER4E LTR ERV1 1 766 0 2961 228 24 31 chrY 1917120 1917649 -22795430 - L1MB3 LINE L1 -256 5927 5403 753 255 113 24 chrY 1917671 1918043 -22795036 - L1MB3 LINE L1 -1458 4688 4284 350 257 0 0 chrY 1918057 1918127 -22794952 + FRAM/FAM SINE Alu 1 70 -105 366 23 0 0 chrY 1918144 1918187 -22794892 + (CA)n Simple_repeat Simple_repeat 2 44 0 5036 259 35 21 chrY 1918187 1920239 -22792840 - L1 LINE L1 -2328 4520 2458 1996 168 53 26 chrY 1920239 1920656 -22792423 - MSTA LTR MaLR 0 428 1 8724 186 16 13 chrY 1920658 1922301 -22790778 - MSTA-int LTR MaLR -2 1649 2 2078 131 22 6 chrY 1922302 1922621 -22790458 - MSTA LTR MaLR 0 428 105 2614 99 42 5 chrY 1922621 1923005 -22790074 + MLT2A1 LTR ERVL 1 398 -46 353 231 0 0 chrY 1923013 1923078 -22790001 + MST-int LTR MaLR 1095 1159 -492 228 86 0 0 chrY 1923084 1923119 -22789960 + (TA)n Simple_repeat Simple_repeat 1 35 0 309 24 0 24 chrY 1923119 1923160 -22789919 + MLT2A2 LTR ERVL 414 453 0 * 547 171 43 3 chrY 1923160 1923263 -22789816 - MSTA LTR MaLR -249 115 3 4077 221 37 31 chrY 1923266 1924440 -22788639 - L1PA15-16 LINE L1 -4387 3197 2017 431 290 77 18 chrY 1924442 1924611 -22788468 - L1PA15-16 LINE L1 -5672 1913 1735 295 337 87 53 chrY 1924781 1925045 -22788034 - L1M2 LINE L1 -5781 1804 1532 306 328 106 88 chrY 1925052 1925372 -22787707 - L1M2 LINE L1 -5986 1599 1274 1049 309 39 32 chrY 1926075 1926557 -22786522 - L1M2 LINE L1 -6411 1174 6 1664 228 20 12 chrY 1926565 1926964 -22786115 - L1MCa LINE L1 -6005 421 20 2263 233 56 10 chrY 1927093 1927794 -22785285 - L1MB8 LINE L1 -246 5932 5208 514 263 17 56 chrY 1927870 1928049 -22785030 + MLT1A1 LTR MaLR 25 196 -169 817 250 46 5 chrY 1928066 1928262 -22784817 + MLT1A1 LTR MaLR 162 365 0 44 88 0 0 chrY 1929927 1930041 -22783038 + AT_rich Low_complexity Low_complexity 1 114 0 3840 218 40 30 chrY 1930045 1931737 -22781342 + L1MB3 LINE L1 4077 5786 -394 1718 206 9 15 chrY 1931739 1932079 -22781000 + MER2 DNA MER2_type 3 340 -5 1840 133 41 85 chrY 1932081 1932493 -22780586 + L1MB3 LINE L1 5783 6176 -7 616 285 59 14 chrY 1932735 1932956 -22780123 - MIR SINE MIR -26 236 6 257 327 154 13 chrY 1932953 1933109 -22779970 - MIR SINE MIR -67 195 18 * 328 315 65 74 chrY 1933280 1933604 -22779475 + L1M4 LINE L1 3191 3511 -2635 1593 200 15 63 chrY 1933688 1934070 -22779009 + MLT1B LTR MaLR 1 363 -27 4295 108 14 17 chrY 1934070 1934107 -22778972 - LTR9B LTR ERV1 0 644 608 2773 19 0 6 chrY 1934107 1934419 -22778660 - AluY SINE Alu -1 310 1 4295 108 14 17 chrY 1934419 1935027 -22778052 - LTR9B LTR ERV1 -36 608 1 1593 200 15 63 chrY 1935027 1935054 -22778025 + MLT1B LTR MaLR 363 390 0 1281 356 69 11 chrY 1935280 1936522 -22776557 + L1M3a LINE L1 2 847 -5108 * 1803 255 48 2 chrY 1936518 1937118 -22775961 + L1M3a LINE L1 2512 3139 -2895 451 83 0 0 chrY 1937118 1937178 -22775901 - MSTA LTR MaLR 0 428 369 1285 185 63 69 chrY 1937198 1937385 -22775694 + L1MA9 LINE L1 5626 5813 -499 2231 104 0 3 chrY 1937385 1937674 -22775405 - AluSg SINE Alu -21 289 2 1285 185 63 69 chrY 1937674 1938117 -22774962 + L1MA9 LINE L1 5813 6290 -22 369 358 74 37 chrY 1938228 1938524 -22774555 + L1M2 LINE L1 10 316 -6533 1283 99 5 38 chrY 1938534 1938746 -22774333 + L1PA11 LINE L1 5970 6174 0 270 111 0 173 chrY 1938746 1938827 -22774252 + L1MA9 LINE L1 6246 6312 0 10516 231 16 4 chrY 1938830 1941486 -22771593 - L1P LINE L1 -796 5350 2662 8652 255 47 17 chrY 1941472 1943993 -22769086 - L1PA13 LINE L1 -4183 2614 1 * 417 263 32 0 chrY 1944007 1944163 -22768916 - Zaphod DNA AcHobo -2981 1050 890 24 53 0 0 chrY 1944167 1944205 -22768874 + AT_rich Low_complexity Low_complexity 1 38 0 265 224 141 12 chrY 1944455 1944540 -22768539 - MIR SINE MIR -71 191 96 364 338 32 32 chrY 1946019 1946235 -22766844 + MIR SINE MIR 40 255 -7 468 226 0 0 chrY 1947099 1947183 -22765896 - AluJ/FLAM SINE Alu -228 84 1 620 287 15 65 chrY 1947213 1947474 -22765605 - MIR SINE MIR 0 262 15 21 36 0 0 chrY 1948137 1948165 -22764914 + AT_rich Low_complexity Low_complexity 1 28 0 403 258 22 32 chrY 1948370 1948507 -22764572 + L1MC5 LINE L1 6766 6900 -908 394 255 28 75 chrY 1948531 1948743 -22764336 + L1MC5 LINE L1 6908 7109 -852 288 0 0 0 chrY 1948819 1948851 -22764228 + (TG)n Simple_repeat Simple_repeat 1 32 0 350 246 75 26 chrY 1949026 1949294 -22763785 + L1MC5 LINE L1 7472 7752 -209 908 319 60 30 chrY 1949298 1949768 -22763311 + L1PA16 LINE L1 1 484 -7097 8748 223 37 16 chrY 1949776 1953324 -22759755 + L1PA16 LINE L1 3954 7600 -4 25 0 0 0 chrY 1953345 1953370 -22759709 + AT_rich Low_complexity Low_complexity 1 25 0 214 210 113 32 chrY 1953414 1953476 -22759603 - MIR SINE MIR -152 110 44 22 0 0 0 chrY 1953702 1953724 -22759355 + AT_rich Low_complexity Low_complexity 1 22 0 269 54 89 0 chrY 1954648 1954704 -22758375 - L1MA7 LINE L1 0 6291 6231 5994 128 17 14 chrY 1954948 1955933 -22757146 - L1MA2 LINE L1 0 7723 6736 183 42 0 0 chrY 1955933 1955957 -22757122 + (TTG)n Simple_repeat Simple_repeat 1 24 0 995 143 0 0 chrY 1955957 1956104 -22756975 - AluSg/x SINE Alu -31 281 135 17704 194 25 29 chrY 1956104 1957643 -22755436 - L1MA2 LINE L1 -1376 6189 4645 2087 140 0 0 chrY 1957643 1957935 -22755144 - AluSx SINE Alu -18 294 3 17704 194 25 29 chrY 1957935 1959684 -22753395 - L1MA2 LINE L1 -2920 4645 2890 198 0 0 0 chrY 1959684 1959706 -22753373 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 17704 194 25 29 chrY 1959706 1960323 -22752756 - L1MA2 LINE L1 -4675 2890 2272 2849 174 17 42 chrY 1960323 1960914 -22752165 - LTR22 LTR ERVK -4 576 1 17704 194 25 29 chrY 1960914 1961283 -22751796 - L1MA2 LINE L1 -5293 2272 1903 2294 82 0 38 chrY 1961283 1961599 -22751480 - AluY SINE Alu -7 304 1 17704 194 25 29 chrY 1961599 1963514 -22749565 - L1MA2 LINE L1 -5662 1903 22 8433 186 29 24 chrY 1963637 1965167 -22747912 - L1MA2 LINE L1 0 7723 6203 3373 196 19 80 chrY 1965167 1966198 -22746881 + LTR5 LTR ERVK 1 969 0 8433 186 29 24 chrY 1966198 1966414 -22746665 - L1MA2 LINE L1 -1520 6203 5990 1935 116 0 38 chrY 1966414 1966755 -22746324 - AluSc SINE Alu 0 330 1 8433 186 29 24 chrY 1966755 1968137 -22744942 - L1MA2 LINE L1 -1733 5990 4572 10268 169 138 9 chrY 1968153 1970322 -22742757 - L1MA2 LINE L1 -4287 3278 831 2094 157 11 16 chrY 1970322 1970686 -22742393 + THE1B LTR MaLR 1 362 -2 9663 132 34 35 chrY 1970692 1972270 -22740809 + THE1B-int LTR MaLR 6 1580 0 2297 142 11 0 chrY 1972270 1972630 -22740449 + THE1B LTR MaLR 1 364 0 3440 236 39 20 chrY 1972631 1973427 -22739652 - L1MA2 LINE L1 -6731 834 24 201 121 0 0 chrY 1973458 1973491 -22739588 + (T)n Simple_repeat Simple_repeat 1 33 0 23 33 0 0 chrY 1973630 1973660 -22739419 + AT_rich Low_complexity Low_complexity 1 30 0 350 335 20 69 chrY 1973856 1973985 -22739094 + L1MDa LINE L1 17 134 -6406 2566 61 0 3 chrY 1973985 1974296 -22738783 + AluY SINE Alu 1 310 -1 350 335 20 69 chrY 1974296 1974369 -22738710 + L1MDa LINE L1 134 209 -6331 277 301 38 30 chrY 1974937 1975070 -22738009 + L1MDa LINE L1 882 1015 -5528 438 243 2 45 chrY 1975081 1975257 -22737822 + L1MDa LINE L1 999 1167 -5363 909 269 74 37 chrY 1975300 1975976 -22737103 + L1MDa LINE L1 1296 2756 -3784 * 3878 196 37 1 chrY 1975973 1976781 -22736298 - L1P LINE L1 -1004 5142 4306 1859 101 27 20 chrY 1976770 1977067 -22736012 + L1PA13 LINE L1 5746 6044 -119 * 1988 184 28 14 chrY 1977067 1977426 -22735653 + THE1B LTR MaLR 1 364 0 10504 121 25 3 chrY 1977426 1978959 -22734120 + THE1B-int LTR MaLR 11 1580 0 2110 164 28 17 chrY 1978959 1979319 -22733760 + THE1B LTR MaLR 1 364 0 766 124 8 0 chrY 1979319 1979440 -22733639 + L1PA13 LINE L1 6040 6161 -2 7896 133 42 12 chrY 2079511 2080953 -22632126 + L1M1 LINE L1 2050 3534 -4031 1206 102 28 0 chrY 2080957 2081133 -22631946 + L1M1 LINE L1 5612 5792 -512 944 143 0 51 chrY 2081133 2081308 -22631771 - MER30 DNA MER1_type 0 230 65 231 271 0 0 chrY 2081553 2081601 -22631478 + (CA)n Simple_repeat Simple_repeat 2 49 0 2225 89 6 25 chrY 2082057 2082372 -22630707 + AluSx SINE Alu 1 309 -3 198 321 53 48 chrY 2082378 2082565 -22630514 - L2 LINE L2 -1238 2076 1889 679 334 49 40 chrY 2082819 2083289 -22629790 + L1M3b LINE L1 1 474 -5807 1251 296 131 7 chrY 2083728 2084250 -22628829 + L2 LINE L2 2738 3313 0 202 103 0 0 chrY 2085831 2085860 -22627219 - L2 LINE L2 0 3272 3244 21 36 0 0 chrY 2085925 2085953 -22627126 + AT_rich Low_complexity Low_complexity 1 28 0 257 280 72 57 chrY 2086207 2086400 -22626679 + L2 LINE L2 1303 1498 -1816 390 356 80 41 chrY 2086424 2087103 -22625976 + L2 LINE L2 1608 2312 -1002 1300 77 14 19 chrY 2087334 2087542 -22625537 + L1P4 LINE L1 5280 5486 -679 321 240 0 13 chrY 2087547 2087622 -22625457 - AluS SINE Alu -228 74 1 1010 177 0 5 chrY 2087664 2087850 -22625229 - L1PA15 LINE L1 -2 6163 5979 1878 128 17 10 chrY 2087864 2088161 -22624918 + L1P4 LINE L1 5494 5792 -373 228 269 0 21 chrY 2088140 2088233 -22624846 + L1MC4 LINE L1 6613 6703 -1339 * 262 278 0 0 chrY 2088175 2088265 -22624814 - L1MC4 LINE L1 -1339 6703 6614 2148 159 3 23 chrY 2088266 2088656 -22624423 + L1PA15 LINE L1 5782 6163 -2 368 227 67 2 chrY 2088700 2088925 -22624154 + AluJo SINE Alu 3 290 -12 2687 16 3 3 chrY 2089002 2089309 -22623770 + AluYa5 SINE Alu 1 307 -4 2105 96 0 47 chrY 2089458 2089622 -22623457 - AluY SINE Alu -24 287 142 2733 7 3 10 chrY 2089622 2089930 -22623149 - AluYa5 SINE Alu -5 306 1 2105 96 0 47 chrY 2089930 2090066 -22623013 - AluY SINE Alu -169 142 1 540 374 88 38 chrY 2090966 2091713 -22621366 - L2 LINE L2 -563 2751 1967 2296 149 81 0 chrY 2091935 2092331 -22620748 + MSTA LTR MaLR 1 428 0 19361 190 31 30 chrY 2092350 2097594 -22615485 + L1MA3 LINE L1 17 5340 -2225 538 131 0 0 chrY 2097594 2097678 -22615401 + AluS SINE Alu 1 84 -229 19361 190 31 30 chrY 2097678 2098560 -22614519 + L1MA3 LINE L1 5340 6219 -1346 1868 146 33 36 chrY 2098563 2098925 -22614154 - THE1B LTR MaLR -3 361 1 10969 109 25 0 chrY 2098925 2100459 -22612620 - THE1B-int LTR MaLR 0 1580 8 1909 146 30 46 chrY 2100459 2100829 -22612250 - THE1B LTR MaLR 0 364 1 3592 157 18 11 chrY 2100831 2100976 -22612103 + L1MA3 LINE L1 6217 6360 -1363 306 0 0 0 chrY 2100976 2101010 -22612069 + (CA)n Simple_repeat Simple_repeat 1 34 0 3592 157 18 11 chrY 2101010 2101299 -22611780 + L1MA3 LINE L1 6360 6646 -1077 1937 133 67 28 chrY 2101299 2101660 -22611419 - THE1C LTR MaLR 0 375 1 3592 157 18 11 chrY 2101660 2102225 -22610854 + L1MA3 LINE L1 6646 7225 -498 2543 167 72 35 chrY 2102245 2102789 -22610290 - MER4B LTR ERV1 -46 564 1 7544 125 49 9 chrY 2102789 2104471 -22608608 - MER4B-int LTR ERV1 0 6758 4974 2968 135 18 8 chrY 2104471 2104983 -22608096 + L1MA3 LINE L1 7208 7724 0 2294 126 19 25 chrY 2105478 2105844 -22607235 + THE1B LTR MaLR 1 364 0 24 32 0 0 chrY 2106429 2106460 -22606619 + AT_rich Low_complexity Low_complexity 1 31 0 270 95 0 0 chrY 2106735 2106777 -22606302 + (TG)n Simple_repeat Simple_repeat 1 42 0 248 292 21 69 chrY 2107333 2107477 -22605602 + L2 LINE L2 3160 3296 -17 213 211 0 0 chrY 2107483 2107535 -22605544 + GA-rich Low_complexity Low_complexity 3 54 0 300 154 0 0 chrY 2110548 2110600 -22602479 + (TA)n Simple_repeat Simple_repeat 1 52 0 1464 45 0 0 chrY 2110600 2110777 -22602302 - L1PA5 LINE L1 -13 6141 5965 1835 177 43 0 chrY 2111271 2111622 -22601457 - MER47A DNA MER2_type 0 366 1 189 180 0 0 chrY 2112476 2112526 -22600553 + T-rich Low_complexity Low_complexity 1 50 0 43292 46 1 3 chrY 2112550 2118716 -22594363 - L1PA3 LINE L1 0 6155 1 983 329 36 18 chrY 2118811 2119197 -22593882 - L1M3d LINE L1 -5498 393 1 1852 216 28 27 chrY 2119234 2119775 -22593304 + MLT2A2 LTR ERVL 3 539 -15 195 42 0 0 chrY 2119778 2119802 -22593277 + (GA)n Simple_repeat Simple_repeat 2 25 0 720 292 4 4 chrY 2119815 2120079 -22593000 - L1M4 LINE L1 -1405 4741 4478 287 281 0 0 chrY 2120081 2120145 -22592934 + LTR16B LTR ERVL 401 464 0 21 0 0 0 chrY 2120167 2120188 -22592891 + AT_rich Low_complexity Low_complexity 1 21 0 279 361 57 16 chrY 2120457 2120579 -22592500 + L2 LINE L2 3141 3267 -5 9750 218 43 11 chrY 2120650 2122674 -22590405 + L1M2 LINE L1 91 2180 -4669 5354 141 11 6 chrY 2122676 2123518 -22589561 + L1PA4 LINE L1 1 846 -5615 * 23974 69 4 5 chrY 2123517 2127623 -22585456 + L1PA4 LINE L1 2392 6495 0 184 316 26 44 chrY 2128826 2128940 -22584139 + MIR SINE MIR 105 216 -46 186 43 0 0 chrY 2129188 2129211 -22583868 + (CA)n Simple_repeat Simple_repeat 2 24 0 543 323 32 14 chrY 2129400 2129620 -22583459 - L3 LINE CR1 -189 1388 1165 189 391 64 35 chrY 2129629 2129831 -22583248 - L2 LINE L2 -686 2628 2421 2579 123 3 3 chrY 2130595 2130970 -22582109 + THE1C LTR MaLR 1 375 0 9302 142 44 7 chrY 2130970 2132493 -22580586 + THE1C-int LTR MaLR 1 1580 0 2352 154 3 8 chrY 2132493 2132870 -22580209 + THE1C LTR MaLR 1 375 0 1770 124 3 54 chrY 2133285 2133599 -22579480 - L1PA12 LINE L1 -77 6091 5794 29 60 0 0 chrY 2133832 2133882 -22579197 + AT_rich Low_complexity Low_complexity 1 50 0 5613 159 73 26 chrY 2134444 2135164 -22577915 + Tigger3b DNA MER2_type 1 799 -2229 1907 171 36 13 chrY 2135164 2135557 -22577522 - L1MA5 LINE L1 0 6300 5899 5613 159 73 26 chrY 2135557 2136012 -22577067 + Tigger3b DNA MER2_type 799 1231 0 5742 112 7 6 chrY 2136312 2137177 -22575902 - L1PB2 LINE L1 -3 7567 6702 * 9264 214 25 7 chrY 2137147 2139309 -22573770 - L1PB2 LINE L1 -1502 6063 3863 4769 143 24 25 chrY 2139311 2140249 -22572830 - L1PB2 LINE L1 -3900 3665 2729 864 158 36 108 chrY 2140272 2140494 -22572585 - MSTA LTR MaLR 0 428 170 5800 225 44 6 chrY 2140494 2141745 -22571334 - L1PB2 LINE L1 -6259 1306 9 191 327 19 0 chrY 2141844 2141896 -22571183 + MIR SINE MIR 97 149 -113 311 243 14 0 chrY 2142106 2142176 -22570903 + L1MB1 LINE L1 5919 5989 -179 184 140 60 0 chrY 2142470 2142520 -22570559 + (TATATG)n Simple_repeat Simple_repeat 2 54 0 354 274 78 28 chrY 2142676 2142855 -22570224 - MIR SINE MIR 0 262 75 469 194 0 0 chrY 2142905 2143003 -22570076 - L1MB7 LINE L1 -18 6166 6069 311 115 0 39 chrY 2143003 2143055 -22570024 + THE1C LTR MaLR 2 51 -324 5678 141 9 3 chrY 2143061 2143932 -22569147 + THE1C-int LTR MaLR 705 1580 0 1739 168 35 35 chrY 2143937 2144307 -22568772 + THE1C LTR MaLR 6 375 0 2253 198 40 12 chrY 2144307 2144801 -22568278 - L1MB7 LINE L1 -111 6073 5566 187 276 52 17 chrY 2145490 2145548 -22567531 - MIR SINE MIR -154 108 49 682 183 14 0 chrY 2146401 2146543 -22566536 + L1MA7 LINE L1 6146 6289 -2 415 267 0 84 chrY 2146574 2146705 -22566374 + L2 LINE L2 3190 3309 -4 748 213 11 6 chrY 2147315 2147489 -22565590 - L1MD3 LINE L1 -2 7993 7819 5493 154 51 12 chrY 2148258 2149504 -22563575 - L1MA4A LINE L1 -6 6297 5005 345 47 0 0 chrY 2150187 2150230 -22562849 + (CA)n Simple_repeat Simple_repeat 2 44 0 28 0 0 0 chrY 2151797 2151825 -22561254 + AT_rich Low_complexity Low_complexity 1 28 0 18016 143 7 14 chrY 2151825 2155845 -22557234 - L1PA10 LINE L1 -9 6474 2485 880 189 71 19 chrY 2155825 2156037 -22557042 - L1PA10 LINE L1 -5106 1355 1133 * 1211 162 10 0 chrY 2156029 2156233 -22556846 + L1P LINE L1 1722 1927 -4219 918 302 4 4 chrY 2156236 2156511 -22556568 - L1PA10 LINE L1 -5599 276 2 6224 164 12 3 chrY 2156532 2158103 -22554976 - L1MA3 LINE L1 0 7724 6136 3005 216 43 0 chrY 2158144 2158742 -22554337 - L1MA3 LINE L1 -6927 638 15 1403 205 57 0 chrY 2158738 2159069 -22554010 + L1MA4A LINE L1 2401 2750 -4099 * 7577 181 37 16 chrY 2159095 2159707 -22553372 + L1MA4A LINE L1 4315 4913 -2092 1772 169 3 10 chrY 2159707 2160003 -22553076 - AluSx SINE Alu -14 298 5 7577 181 37 16 chrY 2160003 2161847 -22551232 + L1MA4A LINE L1 4913 6824 -181 3088 185 15 8 chrY 2161883 2162494 -22550585 + L1 LINE L1 3581 4195 -1951 5531 130 13 4 chrY 2162501 2164253 -22548826 + L1PA15 LINE L1 4379 6165 0 26 50 0 0 chrY 2164851 2164891 -22548188 + AT_rich Low_complexity Low_complexity 1 40 0 1932 125 14 0 chrY 2165317 2165636 -22547443 - AluSq SINE Alu 0 323 1 2170 88 11 0 chrY 2165812 2166097 -22546982 - AluSx SINE Alu -24 288 1 2459 65 0 0 chrY 2166502 2166812 -22546267 - AluY SINE Alu -1 310 1 479 179 0 21 chrY 2167261 2167356 -22545723 + FLAM_A SINE Alu 14 106 -36 22 80 0 0 chrY 2167909 2167959 -22545120 + AT_rich Low_complexity Low_complexity 1 50 0 2433 89 12 0 chrY 2168144 2168482 -22544597 - L1P LINE L1 -1224 4922 4581 2084 88 7 0 chrY 2168482 2168762 -22544317 + L1PA7 LINE L1 5859 6154 0 13717 41 2 3 chrY 2169304 2171774 -22541305 - L1PA4 LINE L1 -1 6154 3684 398 347 33 20 chrY 2172319 2172564 -22540515 - L3b LINE CR1 -232 1351 1104 4471 161 62 19 chrY 2172673 2173223 -22539856 - L1MB1 LINE L1 0 6168 5643 1991 138 3 6 chrY 2173223 2173534 -22539545 + AluSq SINE Alu 1 310 -3 4471 161 62 19 chrY 2173534 2173665 -22539414 - L1MB1 LINE L1 -525 5643 5519 2235 108 0 0 chrY 2173665 2173962 -22539117 - AluSg1 SINE Alu -12 297 1 4471 161 62 19 chrY 2173962 2174321 -22538758 - L1MB1 LINE L1 -649 5519 5104 378 301 87 0 chrY 2174337 2174440 -22538639 - L2 LINE L2 -5 3308 3197 22 0 0 0 chrY 2175305 2175327 -22537752 + AT_rich Low_complexity Low_complexity 1 22 0 196 191 45 79 chrY 2175511 2175600 -22537479 - L2 LINE L2 -125 3188 3103 1595 167 3 35 chrY 2176064 2176352 -22536727 - AluJo SINE Alu -22 290 12 606 318 82 14 chrY 2176414 2176634 -22536445 - MIR SINE MIR -8 254 20 1156 228 88 28 chrY 2177400 2177720 -22535359 - MLT1A1 LTR MaLR -24 341 3 27 0 0 0 chrY 2177864 2177891 -22535188 + AT_rich Low_complexity Low_complexity 1 27 0 1756 234 73 16 chrY 2178830 2179257 -22533822 + MER21B LTR ERV1 344 794 -69 704 139 4 0 chrY 2179356 2179476 -22533603 - LTR12 LTR ERV1 0 714 359 349 247 0 0 chrY 2179476 2179557 -22533522 - LTR30 LTR ERV1 -98 624 544 1309 113 161 2 chrY 2179557 2179799 -22533280 - LTR12 LTR ERV1 -421 2017 57 226 250 0 0 chrY 2179799 2179851 -22533228 - LTR30 LTR ERV1 -670 52 1 1825 291 70 10 chrY 2180294 2180878 -22532201 + L1MDb LINE L1 9 627 -5782 2693 250 136 24 chrY 2180913 2182129 -22530950 + L1MDb LINE L1 378 1707 -4699 2408 61 3 0 chrY 2183545 2183840 -22529239 + AluY SINE Alu 1 296 -15 6732 135 26 15 chrY 2184053 2186034 -22527045 - L1MA2 LINE L1 0 6304 4314 1101 184 61 17 chrY 2187003 2187297 -22525782 + L1MDb LINE L1 1698 2004 -4402 925 161 0 0 chrY 2187326 2187469 -22525610 - FRAM SINE Alu -26 150 8 296 343 20 0 chrY 2189180 2189282 -22523797 + L2 LINE L2 2967 3070 -243 438 237 21 0 chrY 2189306 2189403 -22523676 - Tigger7 DNA MER2_type 0 2487 2389 * 1207 208 72 4 chrY 2189401 2189651 -22523428 - Tigger7 DNA MER2_type -466 267 1 361 198 66 60 chrY 2189892 2190059 -22523020 - L1MCa LINE L1 -5117 1447 1280 53 17 0 0 chrY 2190093 2190153 -22522926 + AT_rich Low_complexity Low_complexity 1 60 0 257 250 53 0 chrY 2190153 2190229 -22522850 - L1MCa LINE L1 -5965 80 1 2054 224 22 60 chrY 2191265 2191407 -22521672 - MER92B LTR ERV1 0 636 490 1215 64 13 0 chrY 2191407 2191564 -22521515 - L1PA3 LINE L1 0 6155 5997 2054 224 22 60 chrY 2191564 2192019 -22521060 - MER92B LTR ERV1 -146 490 62 949 183 18 0 chrY 2196344 2196513 -22516566 + AluSg/x SINE Alu 129 300 -10 240 369 71 74 chrY 2197073 2197480 -22515599 - L2 LINE L2 -38 3234 2829 16982 166 16 24 chrY 2198152 2198257 -22514822 - L1PA13 LINE L1 0 6814 6710 2362 84 0 3 chrY 2198257 2198556 -22514523 - AluSq SINE Alu -15 298 1 16982 166 16 24 chrY 2198556 2200311 -22512768 - L1PA13 LINE L1 -104 6710 4943 1452 186 55 0 chrY 2200311 2200585 -22512494 - AluJo SINE Alu -23 289 1 16982 166 16 24 chrY 2200585 2201989 -22511090 - L1PA13 LINE L1 -1871 4943 3529 1948 136 21 0 chrY 2201989 2202276 -22510803 - AluSx SINE Alu -19 293 1 16982 166 16 24 chrY 2202276 2202583 -22510496 - L1PA13 LINE L1 -3285 3529 3221 441 0 0 0 chrY 2202583 2202632 -22510447 + (TA)n Simple_repeat Simple_repeat 1 49 0 16982 166 16 24 chrY 2202632 2203418 -22509661 - L1PA13 LINE L1 -3593 3221 2494 3854 169 4 17 chrY 2203406 2203419 -22509660 - L1PA13 LINE L1 -4693 2094 2082 * 1845 181 3 0 chrY 2203419 2203722 -22509357 - AluSx SINE Alu -2 310 7 3854 169 4 17 chrY 2203722 2204418 -22508661 - L1PA13 LINE L1 -4705 2082 1394 2785 283 134 12 chrY 2204419 2205239 -22507840 - L1PA13 LINE L1 -5529 1258 339 * 9255 169 171 9 chrY 2205237 2206958 -22506121 - L1PA12 LINE L1 -5577 2004 5 28 0 0 0 chrY 2207338 2207366 -22505713 + AT_rich Low_complexity Low_complexity 1 28 0 792 292 161 11 chrY 2207841 2208214 -22504865 - MLT1J2 LTR MaLR -21 429 1 32 26 0 0 chrY 2208305 2208344 -22504735 + AT_rich Low_complexity Low_complexity 1 39 0 5858 227 42 5 chrY 2208390 2209677 -22503402 + L1M1 LINE L1 12 1346 -6219 * 12084 190 24 20 chrY 2209674 2209764 -22503315 + L1M1 LINE L1 2765 2853 -4712 182 33 67 0 chrY 2209764 2209794 -22503285 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 12084 190 24 20 chrY 2209794 2213323 -22499756 + L1M1 LINE L1 2853 6380 -1185 645 120 0 20 chrY 2213323 2213423 -22499656 + MER4A LTR ERV1 1 98 -566 1828 112 158 78 chrY 2213423 2213797 -22499282 + MER4A LTR ERV1 261 664 0 3324 140 8 9 chrY 2213797 2214615 -22498464 + L1M1 LINE L1 6377 7193 -528 234 0 0 0 chrY 2216972 2216998 -22496081 + (TA)n Simple_repeat Simple_repeat 2 27 0 2617 20 0 0 chrY 2216998 2217292 -22495787 - AluY SINE Alu -17 294 1 21 0 0 0 chrY 2217402 2217423 -22495656 + AT_rich Low_complexity Low_complexity 1 21 0 2705 29 0 6 chrY 2218518 2218829 -22494250 - AluY SINE Alu -2 309 1 24 77 0 0 chrY 2219373 2219425 -22493654 + AT_rich Low_complexity Low_complexity 1 52 0 341 332 100 11 chrY 2219622 2219812 -22493267 + MIR SINE MIR 2 208 -54 1779 170 7 13 chrY 2220550 2220856 -22492223 - MER7A DNA MER2_type 0 346 45 10285 162 34 18 chrY 2221832 2222305 -22490774 + L1MA2 LINE L1 3206 3670 -2634 387 0 0 0 chrY 2222305 2222348 -22490731 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 10285 162 34 18 chrY 2222348 2222897 -22490182 + L1MA2 LINE L1 3670 4209 -2095 450 36 0 0 chrY 2222897 2222953 -22490126 + (CA)n Simple_repeat Simple_repeat 1 56 0 10285 162 34 18 chrY 2222953 2224787 -22488292 + L1MA2 LINE L1 4209 6107 -197 2125 124 3 0 chrY 2224787 2225093 -22487986 + AluSp SINE Alu 1 307 -6 10285 162 34 18 chrY 2225093 2225295 -22487784 + L1MA2 LINE L1 6107 6304 0 937 233 30 0 chrY 2225802 2226004 -22487075 + MSTB2 LTR MaLR 1 208 -249 2133 195 2 5 chrY 2226010 2226405 -22486674 + MER57A LTR ERV1 10 403 0 1201 151 4 100 chrY 2226405 2226663 -22486416 + MSTB2 LTR MaLR 225 457 0 530 316 19 6 chrY 2226674 2226832 -22486247 - MIR SINE MIR -89 173 14 508 265 111 19 chrY 2227066 2227228 -22485851 - MIR SINE MIR -49 213 37 1124 192 33 0 chrY 2227410 2227655 -22485424 - L1MB7 LINE L1 -9 6175 5923 1161 134 6 0 chrY 2228337 2228516 -22484563 - L1P4 LINE L1 -464 5702 5523 * 31059 42 3 1 chrY 2228510 2232385 -22480694 - L1P LINE L1 -1455 4691 810 7425 33 3 0 chrY 2232385 2233603 -22479476 + L1PA4 LINE L1 4933 6153 -2 9224 193 18 18 chrY 2233603 2234591 -22478488 - L1P4 LINE L1 -628 5537 4551 2446 82 0 0 chrY 2234591 2234885 -22478194 - AluY SINE Alu -17 294 1 9224 193 18 18 chrY 2234885 2236167 -22476912 - L1P4 LINE L1 -1614 4551 3271 3823 223 14 2 chrY 2236141 2237113 -22475966 - L1 LINE L1 -836 5310 4327 * 4073 165 15 2 chrY 2237113 2237853 -22475226 - L1PA16 LINE L1 -10 7594 6843 3878 115 11 4 chrY 2237865 2238571 -22474508 - L1P4 LINE L1 -349 5814 5106 11763 261 33 10 chrY 2238581 2240339 -22472740 - L1PA16 LINE L1 -783 6801 5084 207 0 0 0 chrY 2240339 2240362 -22472717 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 11763 261 33 10 chrY 2240362 2243100 -22469979 - L1PA16 LINE L1 -2500 5084 2182 485 294 18 0 chrY 2243329 2243517 -22469562 - L1PA16 LINE L1 -5274 2300 2083 827 330 96 42 chrY 2243585 2244139 -22468940 - L1PA16 LINE L1 -6203 1371 788 21 100 0 0 chrY 2244228 2244298 -22468781 + AT_rich Low_complexity Low_complexity 1 70 0 239 200 0 36 chrY 2244586 2244641 -22468438 - L2 LINE L2 -15 3257 3205 276 336 96 0 chrY 2244922 2245047 -22468032 + MIR SINE MIR 95 231 -31 21 0 0 31 chrY 2245502 2245514 -22467565 + AT_rich Low_complexity Low_complexity 1 12 -19 1926 125 11 0 chrY 2245514 2245795 -22467284 + AluSg SINE Alu 1 284 -26 21 0 0 31 chrY 2245795 2245814 -22467265 + AT_rich Low_complexity Low_complexity 12 31 0 586 246 44 22 chrY 2245990 2246173 -22466906 - MER4C LTR ERV1 -4 461 275 1996 106 3 0 chrY 2246192 2246484 -22466595 - L1PA13 LINE L1 -11 6152 5860 459 88 44 0 chrY 2246488 2246556 -22466523 + L1PA13 LINE L1 5768 5838 -330 367 159 214 35 chrY 2246556 2246667 -22466412 - LTR34 LTR ERV1 -203 496 278 481 207 14 163 chrY 2246667 2246931 -22466148 - LTR34 LTR ERV1 -244 455 136 330 218 73 18 chrY 2247001 2247111 -22465968 - MER4C LTR ERV1 -349 116 1 469 126 0 2 chrY 2247750 2247828 -22465251 + L1PA14 LINE L1 5887 5963 -191 382 237 17 34 chrY 2248020 2248138 -22464941 - L1MC4 LINE L1 -152 7890 7775 * 1103 269 65 28 chrY 2248134 2248531 -22464548 - L1MC4 LINE L1 -1172 6870 6459 2011 141 141 5 chrY 2248755 2249130 -22463949 + MSTA LTR MaLR 1 426 -2 6254 159 11 136 chrY 2249134 2249525 -22463554 + MSTA-int LTR MaLR 3 441 -1139 2156 116 3 0 chrY 2249525 2249818 -22463261 + AluSx SINE Alu 1 294 -18 6254 159 11 136 chrY 2249818 2251008 -22462071 + MSTA-int LTR MaLR 441 1387 -193 779 184 0 0 chrY 2251009 2251150 -22461929 + L1PA15 LINE L1 6021 6161 -4 1241 252 68 43 chrY 2251459 2251947 -22461132 + L1ME2 LINE L1 4672 5171 -975 33 25 0 0 chrY 2253926 2253966 -22459113 + AT_rich Low_complexity Low_complexity 1 40 0 2509 248 73 29 chrY 2254311 2255104 -22457975 + L1ME2 LINE L1 5328 6155 -9 581 159 28 0 chrY 2255184 2255291 -22457788 - L1MA9 LINE L1 -174 6138 6029 * 698 185 135 0 chrY 2255287 2255328 -22457751 + L1MA9 LINE L1 6111 6145 -167 240 111 0 0 chrY 2255328 2255364 -22457715 + (CA)n Simple_repeat Simple_repeat 1 36 0 698 185 135 0 chrY 2255364 2255500 -22457579 + L1MA9 LINE L1 6145 6312 0 521 186 106 0 chrY 2255570 2255683 -22457396 + MER94 DNA DNA 6 130 -4 2226 96 7 0 chrY 2255868 2256160 -22456919 - AluSx SINE Alu -18 294 1 346 328 34 0 chrY 2256612 2256731 -22456348 + L3 LINE CR1 1454 1576 -1 25 0 0 0 chrY 2257225 2257250 -22455829 + AT_rich Low_complexity Low_complexity 1 25 0 29 28 0 0 chrY 2258747 2258783 -22454296 + AT_rich Low_complexity Low_complexity 1 36 0 1885 263 19 12 chrY 2258951 2259465 -22453614 - LTR40a LTR ERVL 0 519 2 21 0 0 0 chrY 2259737 2259758 -22453321 + AT_rich Low_complexity Low_complexity 1 21 0 1854 146 10 0 chrY 2260355 2260643 -22452436 - AluSx SINE Alu -21 291 1 224 316 0 0 chrY 2260998 2261055 -22452024 - L2 LINE L2 -224 3048 2992 300 374 73 45 chrY 2261266 2261715 -22451364 - L2 LINE L2 -635 2679 2218 205 328 93 40 chrY 2261741 2261988 -22451091 - L2 LINE L2 -1303 2011 1752 744 206 0 0 chrY 2262479 2262620 -22450459 + FLAM_C SINE Alu 1 141 -2 2916 289 25 20 chrY 2262633 2263428 -22449651 + L1PB1 LINE L1 1 799 -5988 3149 221 9 5 chrY 2263545 2264438 -22448641 + L1PB1 LINE L1 1634 2544 -4253 203 135 39 58 chrY 2264445 2264497 -22448582 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 5731 147 33 25 chrY 2264651 2265409 -22447670 + L1PB1 LINE L1 5157 5908 -894 3240 45 2 2 chrY 2265409 2265811 -22447268 + L1PA7 LINE L1 5753 6154 0 5731 147 33 25 chrY 2265811 2266677 -22446402 + L1PB1 LINE L1 5908 6802 0 345 320 26 33 chrY 2267653 2267806 -22445273 - MER5A DNA MER1_type -29 160 9 23 0 0 0 chrY 2268012 2268035 -22445044 + AT_rich Low_complexity Low_complexity 1 23 0 228 269 0 0 chrY 2268955 2269007 -22444072 + L1M4c LINE L1 32 83 -6301 2360 75 0 7 chrY 2269684 2269992 -22443087 + AluY SINE Alu 1 306 -5 180 0 0 0 chrY 2270052 2270072 -22443007 + (A)n Simple_repeat Simple_repeat 1 20 0 3346 269 38 23 chrY 2270072 2272657 -22440422 + L1M4c LINE L1 823 3547 -2835 7210 156 23 34 chrY 2272659 2274905 -22438174 + L1MA3 LINE L1 4033 6248 -293 189 0 0 0 chrY 2274905 2274926 -22438153 + (TGGGGG)n Simple_repeat Simple_repeat 3 23 0 7210 156 23 34 chrY 2274926 2275215 -22437864 + L1MA3 LINE L1 6248 6539 -2 255 61 0 0 chrY 2275978 2276011 -22437068 + (TTTTC)n Simple_repeat Simple_repeat 3 35 0 16689 171 32 15 chrY 2276178 2281155 -22431924 + L1PB1 LINE L1 3 4894 -1973 189 0 0 0 chrY 2281155 2281176 -22431903 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 16689 171 32 15 chrY 2281176 2281821 -22431258 + L1PB1 LINE L1 4894 5527 -1340 1600 129 20 109 chrY 2281821 2282169 -22430910 - AluYb8 SINE Alu -1 317 1 16689 171 32 15 chrY 2282169 2283287 -22429792 + L1PB1 LINE L1 5527 6860 -7 1119 158 10 0 chrY 2283296 2283492 -22429587 + L1MA4 LINE L1 5951 6148 -152 777 124 8 0 chrY 2283693 2283822 -22429257 + L1MA5 LINE L1 6160 6289 -11 22 0 0 0 chrY 2283850 2283872 -22429207 + AT_rich Low_complexity Low_complexity 1 22 0 675 236 70 118 chrY 2284708 2285277 -22427802 - MLT1F LTR MaLR 0 542 1 32 0 0 0 chrY 2286653 2286685 -22426394 + AT_rich Low_complexity Low_complexity 1 32 0 268 267 100 0 chrY 2287949 2288009 -22425070 - MIR3 SINE MIR -52 156 91 5891 162 57 3 chrY 2288290 2289355 -22423724 + Ricksha_b DNA DNA 1 1123 -131 6801 151 15 5 chrY 2289424 2291446 -22421633 - L1MA2 LINE L1 0 7723 5684 18061 187 36 19 chrY 2291450 2295195 -22417884 - L1MA2 LINE L1 -3732 3833 18 408 208 40 0 chrY 2295215 2295316 -22417763 + Ricksha_b DNA DNA 1539 1643 -8 276 293 54 42 chrY 2295326 2295493 -22417586 - MIR SINE MIR -16 246 78 34 24 0 0 chrY 2295736 2295777 -22417302 + AT_rich Low_complexity Low_complexity 1 41 0 73 23 0 0 chrY 2297340 2297427 -22415652 + AT_rich Low_complexity Low_complexity 1 87 0 1968 148 0 0 chrY 2297517 2297830 -22415249 - AluSx SINE Alu 0 313 1 1216 218 25 4 chrY 2297992 2298267 -22414812 - L1MD3 LINE L1 -313 7682 7402 537 226 0 32 chrY 2298267 2298391 -22414688 - MLT1F1 LTR MaLR -446 121 2 1222 255 8 21 chrY 2298394 2298767 -22414312 - L1MD3 LINE L1 -719 7276 6909 228 35 0 0 chrY 2298768 2298797 -22414282 + (TCCC)n Simple_repeat Simple_repeat 4 32 0 745 144 0 28 chrY 2298802 2298983 -22414096 + (TTCC)n Simple_repeat Simple_repeat 3 178 0 356 147 13 0 chrY 2298986 2299061 -22414018 + CT-rich Low_complexity Low_complexity 4 79 0 379 234 96 69 chrY 2299061 2299249 -22413830 - L1MC3 LINE L1 -1107 6678 6486 * 3019 266 70 33 chrY 2299235 2301504 -22411575 - L1MD3 LINE L1 -743 5403 3998 538 153 57 57 chrY 2301657 2301814 -22411265 - L1MC/D LINE L1 -724 5518 5362 5384 75 3 1 chrY 2301941 2302652 -22410427 + L1PA7 LINE L1 5439 6150 -4 5735 60 3 7 chrY 2304483 2305236 -22407843 + L1PA7 LINE L1 5405 6154 0 38 61 0 0 chrY 2305311 2305377 -22407702 + AT_rich Low_complexity Low_complexity 1 66 0 24 53 0 0 chrY 2305723 2305761 -22407318 + AT_rich Low_complexity Low_complexity 1 38 0 745 262 16 5 chrY 2305945 2306132 -22406947 - MER5A DNA MER1_type 0 189 1 319 264 157 0 chrY 2306625 2306746 -22406333 + MIR SINE MIR 120 259 -3 510 306 108 13 chrY 2306823 2307055 -22406024 + MIR SINE MIR 1 254 -8 2325 241 42 2 chrY 2307311 2307830 -22405249 + LTR9B LTR ERV1 105 644 0 267 54 0 0 chrY 2307943 2307980 -22405099 + (TG)n Simple_repeat Simple_repeat 2 38 0 346 357 51 0 chrY 2308669 2308826 -22404253 + MIR SINE MIR 98 262 0 568 335 45 0 chrY 2310305 2310484 -22402595 - MIR SINE MIR 0 262 76 3984 152 33 16 chrY 2313642 2313872 -22399207 - MER50 LTR ERV1 -23 711 486 2128 91 9 35 chrY 2313872 2314190 -22398889 - AluSx SINE Alu -2 310 1 3984 152 33 16 chrY 2314190 2314658 -22398421 - MER50 LTR ERV1 -248 486 1 2298 92 3 0 chrY 2315212 2315518 -22397561 + AluSg SINE Alu 1 307 -3 2040 96 7 18 chrY 2315744 2316026 -22397053 - AluSg SINE Alu -27 283 5 1033 96 7 0 chrY 2316029 2316165 -22396914 - AluSq/x SINE Alu -175 137 1 246 340 19 28 chrY 2316449 2316555 -22396524 + L3b LINE CR1 1392 1496 -87 352 153 0 0 chrY 2317669 2317728 -22395351 - L1M4 LINE L1 -2187 3959 3901 6057 97 16 3 chrY 2317728 2318804 -22394275 + L1PA13 LINE L1 5075 6162 -1 301 253 13 0 chrY 2319120 2319199 -22393880 + MER116 DNA Mariner 1 80 0 891 261 43 4 chrY 2319930 2320164 -22392915 + MIR SINE MIR 7 249 -13 21 36 0 0 chrY 2320164 2320192 -22392887 + AT_rich Low_complexity Low_complexity 1 28 0 329 178 68 0 chrY 2320263 2320336 -22392743 - L1ME2 LINE L1 -9 6155 6078 3887 119 58 80 chrY 2320537 2321328 -22391751 - LTR1 LTR ERV1 0 785 12 768 214 17 16 chrY 2321361 2321567 -22391512 - L1ME1 LINE L1 -252 5914 5732 868 152 72 72 chrY 2321578 2321815 -22391264 + MLT1B LTR MaLR 154 390 0 2204 288 93 16 chrY 2321954 2323596 -22389483 - L1M4 LINE L1 -1621 4525 2758 2219 237 44 4 chrY 2323641 2324144 -22388935 - Tigger7 DNA MER2_type -1921 566 44 22 70 0 0 chrY 2324516 2324559 -22388520 + AT_rich Low_complexity Low_complexity 1 43 0 1395 162 20 0 chrY 2324574 2324821 -22388258 - L1PA16 LINE L1 -6 6160 5909 367 353 85 5 chrY 2324950 2325174 -22387905 - L1MEc LINE L1 -5352 1044 803 1960 263 38 87 chrY 2325649 2326655 -22386424 - L1ME1 LINE L1 -19 6541 5583 552 107 0 0 chrY 2326658 2326742 -22386337 - L1PA10 LINE L1 0 6168 6085 11411 136 6 14 chrY 2326743 2328484 -22384595 - L1PA10 LINE L1 -180 5994 4278 2440 77 0 0 chrY 2328484 2328795 -22384284 + AluY SINE Alu 1 311 0 11411 136 6 14 chrY 2328795 2329656 -22383423 - L1PA10 LINE L1 -1896 4278 3412 4207 235 80 110 chrY 2329657 2331461 -22381618 - L1ME1 LINE L1 -951 5589 3733 817 238 6 11 chrY 2331461 2331642 -22381437 - FRAM SINE Alu 0 176 1 4207 235 80 110 chrY 2331642 2331659 -22381420 - L1ME1 LINE L1 -2807 3733 3717 186 43 0 0 chrY 2331659 2331682 -22381397 + (TG)n Simple_repeat Simple_repeat 2 24 0 4207 235 80 110 chrY 2331682 2331767 -22381312 - L1ME1 LINE L1 -2823 3717 3631 2223 106 0 0 chrY 2331767 2332060 -22381019 - AluSc SINE Alu -16 293 1 4207 235 80 110 chrY 2332060 2333278 -22379801 - L1ME1 LINE L1 -2909 3631 2415 6166 152 39 4 chrY 2333336 2334419 -22378660 - HSMAR2 DNA Mariner -2 1300 180 668 294 58 10 chrY 2334441 2334734 -22378345 - L1ME1 LINE L1 -4339 2201 1895 4237 187 57 16 chrY 2334737 2335706 -22377373 - L1MA8 LINE L1 -6 6285 5277 3705 233 24 3 chrY 2335697 2336696 -22376383 - L1MA8 LINE L1 -2709 3437 2418 * 15166 153 16 15 chrY 2387108 2389692 -22323387 - Tigger2 DNA MER2_type -130 2588 1 347 259 129 70 chrY 2390364 2390565 -22322514 + MIR SINE MIR 2 214 -48 21 0 0 0 chrY 2390747 2390768 -22322311 + AT_rich Low_complexity Low_complexity 1 21 0 2100 104 7 0 chrY 2390909 2391196 -22321883 - AluSp SINE Alu 0 313 25 2352 129 13 11 chrY 2391236 2391608 -22321471 + THE1C LTR MaLR 1 373 -2 217 222 0 0 chrY 2391755 2391800 -22321279 + (TGAA)n Simple_repeat Simple_repeat 4 48 0 180 274 123 27 chrY 2392181 2392254 -22320825 + L2 LINE L2 3229 3308 -5 21 0 0 0 chrY 2392380 2392401 -22320678 + AT_rich Low_complexity Low_complexity 1 21 0 369 0 0 0 chrY 2394055 2394096 -22318983 + (CA)n Simple_repeat Simple_repeat 2 42 0 720 240 37 70 chrY 2394398 2394640 -22318439 + MER21B LTR ERV1 1 234 -629 1596 245 34 32 chrY 2394678 2395115 -22317964 + MER21B LTR ERV1 321 758 -105 2269 85 0 52 chrY 2395313 2395641 -22317438 + AluSp SINE Alu 3 313 0 2030 158 31 6 chrY 2396004 2396359 -22316720 + THE1B LTR MaLR 1 364 0 4351 40 3 42 chrY 2397029 2397604 -22315475 + L1PA5 LINE L1 5602 6154 0 180 77 0 0 chrY 2398611 2398637 -22314442 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 16490 36 38 1 chrY 2398637 2401441 -22311638 - L1PA4 LINE L1 -16 6139 3229 2503 120 5 8 chrY 2401721 2402097 -22310982 - THE1C LTR MaLR 0 375 1 673 146 8 32 chrY 2402101 2402224 -22310855 - THE1-int LTR MaLR -387 1193 1074 1371 100 5 11 chrY 2402230 2402420 -22310659 - THE1C LTR MaLR -186 189 1 2203 148 14 0 chrY 2402424 2402769 -22310310 - THE1-int LTR MaLR -387 1193 844 205 264 216 16 chrY 2403104 2403229 -22309850 - MIR SINE MIR 0 262 113 22 35 0 0 chrY 2403425 2403454 -22309625 + AT_rich Low_complexity Low_complexity 1 29 0 1380 24 12 0 chrY 2403482 2403648 -22309431 + L1PA3 LINE L1 5985 6152 -3 368 312 40 0 chrY 2404120 2404245 -22308834 - MIR SINE MIR -4 258 129 26 0 0 0 chrY 2405067 2405093 -22307986 + AT_rich Low_complexity Low_complexity 1 26 0 25 65 0 0 chrY 2406041 2406087 -22306992 + AT_rich Low_complexity Low_complexity 1 46 0 1997 144 36 36 chrY 2406177 2406539 -22306540 - THE1B LTR MaLR -2 362 1 25 51 0 0 chrY 2406559 2406598 -22306481 + AT_rich Low_complexity Low_complexity 1 39 0 237 280 9 56 chrY 2407375 2407482 -22305597 + MIR SINE MIR 100 201 -61 24 32 0 0 chrY 2408566 2408597 -22304482 + AT_rich Low_complexity Low_complexity 1 31 0 281 204 11 11 chrY 2408648 2408758 -22304321 + (TTTAA)n Simple_repeat Simple_repeat 1 110 0 28 71 0 0 chrY 2408759 2408815 -22304264 + AT_rich Low_complexity Low_complexity 1 56 0 18210 202 15 14 chrY 2408860 2411424 -22301655 + L1PA16 LINE L1 2 2563 -4306 2499 61 0 3 chrY 2411424 2411719 -22301360 - AluY SINE Alu -17 294 1 18210 202 15 14 chrY 2411719 2412148 -22300931 + L1PA16 LINE L1 2563 2990 -3879 609 27 0 0 chrY 2412148 2412222 -22300857 + L1PA5 LINE L1 6076 6149 -5 18210 202 15 14 chrY 2412222 2412279 -22300800 + L1PA16 LINE L1 2990 3045 -3824 2286 110 0 16 chrY 2412279 2412597 -22300482 - AluSq SINE Alu 0 313 1 18210 202 15 14 chrY 2412597 2416394 -22296685 + L1PA16 LINE L1 3045 6860 -9 4291 135 27 10 chrY 2417408 2418119 -22294960 - Tigger1 DNA MER2_type 0 2418 1696 5351 159 41 21 chrY 2418134 2419127 -22293952 - Tigger1 DNA MER2_type -1405 1013 1 275 333 22 0 chrY 2419127 2419217 -22293862 - MIR SINE MIR -64 198 107 4940 142 14 10 chrY 2419274 2421178 -22291901 - L1PA15 LINE L1 0 6816 4884 9233 254 34 29 chrY 2421178 2424670 -22288409 - L1PA15 LINE L1 -3276 3521 3 207 0 0 0 chrY 2424682 2424705 -22288374 + (A)n Simple_repeat Simple_repeat 1 23 0 1293 201 109 10 chrY 2424710 2425023 -22288056 + MER2 DNA MER2_type 1 344 0 509 216 43 0 chrY 2425754 2425870 -22287209 - MIR SINE MIR -16 246 126 21 0 0 0 chrY 2425997 2426018 -22287061 + AT_rich Low_complexity Low_complexity 1 21 0 181 245 204 41 chrY 2426235 2426333 -22286746 + L2 LINE L2 2566 2679 -635 200 116 23 23 chrY 2426369 2426412 -22286667 + L2 LINE L2 3266 3308 -5 2016 98 0 0 chrY 2427031 2427306 -22285773 + L1P3 LINE L1 4 278 -6183 5545 74 0 8 chrY 2427306 2428045 -22285034 + L1PA8 LINE L1 5434 6166 -6 5579 162 16 2 chrY 2428049 2429186 -22283893 + L1MA4A LINE L1 5144 6296 -7 4033 200 24 72 chrY 2429215 2430150 -22282929 + L1MB3 LINE L1 4614 5423 -760 2320 231 60 50 chrY 2430150 2430831 -22282248 + MER76 LTR ERV 1 688 0 4033 200 24 72 chrY 2430831 2431556 -22281523 + L1MB3 LINE L1 5423 6181 -2 23 33 0 0 chrY 2431609 2431639 -22281440 + AT_rich Low_complexity Low_complexity 1 30 0 752 266 12 8 chrY 2431694 2431935 -22281144 + L1 LINE L1 4452 4693 -1453 351 221 53 0 chrY 2431934 2432029 -22281050 + L1 LINE L1 4422 4521 -1625 * 842 298 24 60 chrY 2432096 2432509 -22280570 - MLT1I LTR MaLR 0 409 12 880 240 38 116 chrY 2432551 2432947 -22280132 - MLT1A1 LTR MaLR 0 365 1 190 307 175 9 chrY 2432963 2433077 -22280002 - MIR SINE MIR -49 213 81 42729 31 22 1 chrY 2434387 2440412 -22272667 - L1HS LINE L1 0 6155 4 3088 149 39 8 chrY 2440412 2440988 -22272091 - MER4B LTR ERV1 -20 759 1 192 308 65 56 chrY 2441369 2441476 -22271603 - L2 LINE L2 -158 3114 3007 27 29 0 0 chrY 2442537 2442571 -22270508 + AT_rich Low_complexity Low_complexity 1 34 0 190 286 41 0 chrY 2443026 2443075 -22270004 - L2 LINE L2 -3 3269 3219 29 0 0 0 chrY 2443521 2443550 -22269529 + AT_rich Low_complexity Low_complexity 1 29 0 40 67 0 0 chrY 2443644 2443719 -22269360 + AT_rich Low_complexity Low_complexity 1 75 0 23 78 0 0 chrY 2443753 2443804 -22269275 + AT_rich Low_complexity Low_complexity 1 51 0 396 0 0 0 chrY 2443833 2443877 -22269202 + (TA)n Simple_repeat Simple_repeat 1 44 0 284 288 161 8 chrY 2444487 2444605 -22268474 - MIR SINE MIR 0 262 127 1969 111 0 0 chrY 2445599 2445860 -22267219 - AluSx SINE Alu -10 302 42 4285 118 46 1 chrY 2445999 2446762 -22266317 + L1PBa LINE L1 1614 2410 -4453 14990 177 26 33 chrY 2446768 2446867 -22266212 - L1M1 LINE L1 -4462 3103 3005 1512 141 0 8 chrY 2446867 2447101 -22265978 - AluSg/x SINE Alu 0 310 79 14990 177 26 33 chrY 2447101 2447845 -22265234 - L1M1 LINE L1 -4560 3005 2257 2257 67 3 18 chrY 2447845 2448129 -22264950 - AluY SINE Alu -15 296 17 14990 177 26 33 chrY 2448129 2450402 -22262677 - L1M1 LINE L1 -5308 2257 8 306 269 186 14 chrY 2450580 2450725 -22262354 + MER5A DNA MER1_type 9 178 -11 843 227 152 28 chrY 2451007 2451329 -22261750 + MLT1D LTR MaLR 127 488 -17 201 208 0 21 chrY 2451436 2451484 -22261595 + (TAA)n Simple_repeat Simple_repeat 2 48 0 210 37 0 0 chrY 2451678 2451705 -22261374 + (A)n Simple_repeat Simple_repeat 1 27 0 257 264 109 9 chrY 2451821 2451931 -22261148 + L2 LINE L2 2933 3053 -219 830 282 53 8 chrY 2452233 2452478 -22260601 - MIR SINE MIR 0 262 7 242 270 217 26 chrY 2453014 2453129 -22259950 + MIR3 SINE MIR 20 156 -52 1361 36 0 6 chrY 2454834 2455000 -22258079 - L1PA4 LINE L1 -8 6147 5983 249 98 0 0 chrY 2455459 2455500 -22257579 + (GA)n Simple_repeat Simple_repeat 2 42 0 239 352 11 0 chrY 2456697 2456785 -22256294 - MIR3 SINE MIR -17 191 103 536 248 163 33 chrY 2456797 2456950 -22256129 + MER5A DNA MER1_type 16 188 -1 1113 163 28 23 chrY 2457605 2457820 -22255259 + MER20 DNA MER1_type 3 218 -1 41780 40 1 2 chrY 2458712 2464871 -22248208 + L1PA3 LINE L1 2 6155 0 345 47 0 0 chrY 2465784 2465827 -22247252 + (TA)n Simple_repeat Simple_repeat 2 44 0 2714 26 0 3 chrY 2466007 2466318 -22246761 - AluY SINE Alu -1 310 1 2208 212 47 21 chrY 2467118 2467651 -22245428 - MLT1E2 LTR MaLR 0 626 80 264 314 12 12 chrY 2467609 2467695 -22245384 - MLT2D LTR ERVL -289 125 41 * 241 333 39 0 chrY 2467795 2467873 -22245206 - MER91A DNA MER1_type -115 81 1 266 374 123 19 chrY 2468957 2469112 -22243967 + MIR3 SINE MIR 5 175 -33 296 307 68 43 chrY 2469232 2469416 -22243663 + MIR3 SINE MIR 33 216 -31 256 245 18 25 chrY 2469488 2469583 -22243496 + MIR3 SINE MIR 66 160 -48 204 40 0 0 chrY 2470637 2470662 -22242417 + (TA)n Simple_repeat Simple_repeat 1 25 0 2411 145 27 44 chrY 2470852 2471474 -22241605 + MER4B LTR ERV1 3 779 0 968 210 48 117 chrY 2471803 2472385 -22240694 + MER34 LTR ERV1 1 542 0 298 253 23 0 chrY 2472945 2473032 -22240047 + MER103 DNA DNA 22 110 -56 3853 137 16 3 chrY 2473968 2474595 -22238484 - MER41B LTR ERV1 0 635 1 786 208 74 0 chrY 2475599 2475830 -22237249 - MER69 DNA AcHobo -1 2525 2278 458 217 0 0 chrY 2475837 2475929 -22237150 - Tigger7 DNA MER2_type -29 2462 2371 384 165 13 0 chrY 2475920 2475999 -22237080 - MER69 DNA AcHobo -235 2291 2212 * 436 187 0 0 chrY 2475999 2476074 -22237005 - MER69 DNA AcHobo -2450 76 2 201 184 41 0 chrY 2476486 2476535 -22236544 + L2 LINE L2 3263 3313 0 273 352 95 11 chrY 2476674 2476853 -22236226 - MIR SINE MIR -34 228 35 486 333 27 31 chrY 2481073 2481198 -22231881 - MIR SINE MIR -29 233 109 979 171 114 30 chrY 2481198 2481358 -22231721 - MER33 DNA MER1_type -2261 324 179 204 40 0 0 chrY 2481358 2481383 -22231696 + (TTATA)n Simple_repeat Simple_repeat 5 29 0 1598 216 3 0 chrY 2481384 2481667 -22231412 - AluJo SINE Alu -28 284 1 979 171 114 30 chrY 2481667 2481683 -22231396 - MER33 DNA MER1_type -2406 179 166 297 51 0 0 chrY 2481683 2481722 -22231357 + (TG)n Simple_repeat Simple_repeat 1 39 0 979 171 114 30 chrY 2481722 2481841 -22231238 - MER33 DNA MER1_type -2419 166 1 486 333 27 31 chrY 2481841 2481937 -22231142 - MIR SINE MIR -153 109 13 364 236 157 39 chrY 2482874 2483052 -22230027 + MIR SINE MIR 49 247 -15 378 331 27 14 chrY 2483453 2483601 -22229478 + MIR SINE MIR 47 196 -66 312 279 49 103 chrY 2484744 2484948 -22228131 + L1M2 LINE L1 821 1013 -5836 342 0 0 0 chrY 2484988 2485026 -22228053 + (CA)n Simple_repeat Simple_repeat 1 38 0 276 111 0 0 chrY 2488027 2488072 -22225007 + (TG)n Simple_repeat Simple_repeat 2 46 0 22 0 0 0 chrY 2489865 2489887 -22223192 + AT_rich Low_complexity Low_complexity 1 22 0 321 302 26 17 chrY 2490238 2490354 -22222725 - L2 LINE L2 -10 3303 3187 23 54 0 0 chrY 2493099 2493136 -22219943 + AT_rich Low_complexity Low_complexity 1 37 0 373 253 44 0 chrY 2493989 2494080 -22218999 + MIR3 SINE MIR 86 180 -28 186 244 12 85 chrY 2494279 2494361 -22218718 - L2 LINE L2 -97 3216 3141 432 219 10 0 chrY 2494421 2494517 -22218562 - MIR3 SINE MIR -11 197 101 24 0 0 0 chrY 2494882 2494906 -22218173 + AT_rich Low_complexity Low_complexity 1 24 0 2311 83 0 13 chrY 2495396 2495709 -22217370 + AluSc SINE Alu 1 309 0 436 264 189 7 chrY 2496330 2496478 -22216601 - MER5A DNA MER1_type -2 187 13 2253 117 117 5 chrY 2497684 2498069 -22215010 - MSTA LTR MaLR 0 428 1 198 0 0 0 chrY 2498142 2498164 -22214915 + (T)n Simple_repeat Simple_repeat 1 22 0 2339 39 42 0 chrY 2498325 2498610 -22214469 - AluY SINE Alu -14 297 1 305 280 48 32 chrY 2499574 2499699 -22213380 - MIR SINE MIR -71 191 65 25 65 0 0 chrY 2499791 2499837 -22213242 + AT_rich Low_complexity Low_complexity 1 46 0 188 260 27 82 chrY 2500724 2500797 -22212282 - MIR SINE MIR -67 141 73 2198 120 22 33 chrY 2501222 2501590 -22211489 + THE1B LTR MaLR 1 364 0 332 184 81 14 chrY 2501737 2501835 -22211244 - MIR SINE MIR -100 108 1 254 329 128 34 chrY 2503247 2503396 -22209683 - MIR SINE MIR -91 171 9 23 86 0 0 chrY 2503397 2503455 -22209624 + AT_rich Low_complexity Low_complexity 1 58 0 1434 91 0 0 chrY 2504549 2504736 -22208343 + U2 snRNA snRNA 1 187 -1 2480 80 0 0 chrY 2504763 2505074 -22208005 + AluSx SINE Alu 1 311 -1 29 84 0 0 chrY 2505386 2505457 -22207622 + AT_rich Low_complexity Low_complexity 1 71 0 1955 122 0 14 chrY 2506715 2507011 -22206068 + AluSx SINE Alu 1 292 -20 1808 145 17 7 chrY 2507815 2508111 -22204968 + AluJb SINE Alu 2 300 -12 344 208 14 0 chrY 2509603 2509675 -22203404 - MER116 DNA Mariner -4 76 4 241 121 0 0 chrY 2509858 2509891 -22203188 + U2 snRNA snRNA 1 33 -155 655 322 89 13 chrY 2510428 2510664 -22202415 + MIR SINE MIR 9 262 0 26 30 0 0 chrY 2511289 2511322 -22201757 + AT_rich Low_complexity Low_complexity 1 33 0 1429 199 0 37 chrY 2512450 2512746 -22200333 + AluJo SINE Alu 1 285 -27 1550 191 0 16 chrY 2513962 2514266 -22198813 + AluJo SINE Alu 1 299 -13 23 0 0 0 chrY 2514914 2514937 -22198142 + AT_rich Low_complexity Low_complexity 1 23 0 2357 90 0 0 chrY 2515116 2515416 -22197663 + AluSg SINE Alu 1 300 -10 1056 148 64 35 chrY 2516507 2516710 -22196369 - MER3 DNA MER1_type 0 209 1 26 0 0 0 chrY 2519039 2519065 -22194014 + AT_rich Low_complexity Low_complexity 1 26 0 24 0 0 0 chrY 2521099 2521123 -22191956 + AT_rich Low_complexity Low_complexity 1 24 0 23 33 0 0 chrY 2521261 2521291 -22191788 + AT_rich Low_complexity Low_complexity 1 30 0 430 277 37 41 chrY 2521618 2521776 -22191303 - MIR3 SINE MIR -9 199 41 901 223 59 25 chrY 2521889 2522091 -22190988 - MIR SINE MIR -31 231 23 24 0 0 0 chrY 2522099 2522123 -22190956 + AT_rich Low_complexity Low_complexity 1 24 0 2013 90 0 0 chrY 2522787 2523042 -22190037 + AluSx SINE Alu 28 282 -30 722 253 56 5 chrY 2524437 2524635 -22188444 + MER3 DNA MER1_type 2 209 0 2147 92 20 14 chrY 2525331 2525625 -22187454 + AluY SINE Alu 3 298 -13 22 0 0 0 chrY 2526244 2526266 -22186813 + AT_rich Low_complexity Low_complexity 1 22 0 192 158 0 0 chrY 2526540 2526578 -22186501 + T-rich Low_complexity Low_complexity 1 38 0 42404 37 21 1 chrY 2526581 2532613 -22180466 - L1PA3 LINE L1 0 6155 1 5729 119 35 3 chrY 2533373 2534980 -22178099 - L1PA14 LINE L1 -2 6159 4522 2067 58 0 4 chrY 2535031 2535290 -22177789 - AluY SINE Alu -9 302 45 23 0 0 0 chrY 2536638 2536661 -22176418 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chrY 2538496 2538524 -22174555 + AT_rich Low_complexity Low_complexity 1 28 0 464 233 0 0 chrY 2538677 2538763 -22174316 + L2 LINE L2 3225 3310 -3 4880 40 0 5 chrY 2538961 2539554 -22173525 + L1PA5 LINE L1 5565 6154 0 1779 68 24 8 chrY 2539748 2539997 -22173082 - L1PA13 LINE L1 0 6163 5911 316 343 98 63 chrY 2541450 2541879 -22171200 - L3 LINE CR1 -2 1575 1132 21 0 0 0 chrY 2542030 2542051 -22171028 + AT_rich Low_complexity Low_complexity 1 21 0 685 81 0 10 chrY 2544188 2544287 -22168792 + L1M1 LINE L1 5505 5602 -700 213 362 76 19 chrY 2544371 2544476 -22168603 + MIR SINE MIR 36 146 -62 608 211 113 36 chrY 2544649 2544843 -22168236 + MER3 DNA MER1_type 1 209 0 300 357 18 9 chrY 2546009 2546121 -22166958 - MIR SINE MIR -65 143 31 1768 114 81 44 chrY 2546214 2546512 -22166567 + AluSx SINE Alu 3 311 -1 315 0 0 0 chrY 2550140 2550175 -22162904 + (TG)n Simple_repeat Simple_repeat 2 36 0 1797 154 10 35 chrY 2550178 2550490 -22162589 - AluSx SINE Alu -8 304 1 216 0 0 0 chrY 2551174 2551198 -22161881 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 24 32 0 0 chrY 2551513 2551544 -22161535 + AT_rich Low_complexity Low_complexity 1 31 0 2479 52 0 3 chrY 2553204 2553512 -22159567 + AluY SINE Alu 1 307 -4 333 0 0 0 chrY 2554016 2554053 -22159026 + (TG)n Simple_repeat Simple_repeat 2 38 0 820 215 0 0 chrY 2554058 2554216 -22158863 - FAM SINE Alu -17 158 1 1067 97 13 13 chrY 2555084 2555239 -22157840 - AluY SINE Alu -4 307 153 1275 132 4 22 chrY 2556169 2556396 -22156683 - L1PA14 LINE L1 -1 6160 5938 27 29 0 0 chrY 2558115 2558149 -22154930 + AT_rich Low_complexity Low_complexity 1 34 0 758 100 0 0 chrY 2558366 2558476 -22154603 - L1MA3 LINE L1 0 6305 6196 2419 76 0 3 chrY 2558908 2559211 -22153868 - AluSq SINE Alu -11 302 1 941 204 5 46 chrY 2559515 2559711 -22153368 - MER20 DNA MER1_type -1 218 31 9038 150 13 5 chrY 2560754 2563358 -22149721 - L1MA2 LINE L1 0 7723 5098 12382 136 11 13 chrY 2563361 2563900 -22149179 - L1PA10 LINE L1 -16 6152 5613 2368 111 17 14 chrY 2563900 2564261 -22148818 - THE1B LTR MaLR 0 364 3 10048 122 14 30 chrY 2564263 2565870 -22147209 - THE1B-int LTR MaLR 0 1580 1 12382 136 11 13 chrY 2565870 2568229 -22144850 - L1PA10 LINE L1 -556 5612 3279 1393 267 38 45 chrY 2568231 2568910 -22144169 - L1P3 LINE L1 -5088 787 2 14270 188 30 15 chrY 2568935 2571253 -22141826 - L1MA2 LINE L1 -2449 5116 2834 297 0 0 0 chrY 2571253 2571286 -22141793 + (TG)n Simple_repeat Simple_repeat 2 34 0 14270 188 30 15 chrY 2571286 2573705 -22139374 - L1MA2 LINE L1 -4731 2834 15 558 351 12 0 chrY 2576251 2576419 -22136660 + MIR3 SINE MIR 30 199 -9 190 315 0 19 chrY 2579341 2579395 -22133684 - L2 LINE L2 0 3272 3220 780 237 9 24 chrY 2580087 2580298 -22132781 + MER3 DNA MER1_type 2 209 0 345 47 0 0 chrY 2581907 2581950 -22131129 + (TG)n Simple_repeat Simple_repeat 2 44 0 2393 50 3 31 chrY 2582166 2582486 -22130593 - AluY SINE Alu 0 311 1 186 103 0 0 chrY 2582618 2582647 -22130432 + (A)n Simple_repeat Simple_repeat 1 29 0 1547 133 0 27 chrY 2583024 2583287 -22129792 + L1PB1 LINE L1 5895 6150 -1 378 335 73 43 chrY 2583366 2583530 -22129549 - MIR3 SINE MIR -10 198 30 38 39 0 0 chrY 2583601 2583653 -22129426 + AT_rich Low_complexity Low_complexity 1 52 0 183 80 0 0 chrY 2585748 2585773 -22127306 + (GAA)n Simple_repeat Simple_repeat 1 25 0 26 30 0 0 chrY 2588355 2588388 -22124691 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chrY 2589265 2589286 -22123793 + AT_rich Low_complexity Low_complexity 1 21 0 2510 44 0 0 chrY 2590434 2590728 -22122351 + AluY SINE Alu 1 294 -17 2446 80 0 3 chrY 2590818 2591131 -22121948 + AluSx SINE Alu 1 312 0 2630 36 0 0 chrY 2593251 2593558 -22119521 + AluY SINE Alu 1 307 -4 22 115 0 0 chrY 2593738 2593851 -22119228 + AT_rich Low_complexity Low_complexity 1 113 0 2586 51 0 0 chrY 2593939 2594250 -22118829 + AluY SINE Alu 1 311 0 1675 157 0 33 chrY 2595623 2595922 -22117157 + AluSx SINE Alu 1 289 -23 24 0 0 0 chrY 2595922 2595946 -22117133 + AT_rich Low_complexity Low_complexity 1 24 0 27 0 0 0 chrY 2596452 2596479 -22116600 + AT_rich Low_complexity Low_complexity 1 27 0 2006 112 22 0 chrY 2596569 2596871 -22116208 - AluSx SINE Alu 0 308 1 21 36 0 0 chrY 2597946 2597974 -22115105 + AT_rich Low_complexity Low_complexity 1 28 0 183 80 0 0 chrY 2599191 2599216 -22113863 + (A)n Simple_repeat Simple_repeat 1 25 0 252 0 0 0 chrY 2599271 2599299 -22113780 + (TG)n Simple_repeat Simple_repeat 2 29 0 232 348 135 23 chrY 2599379 2599822 -22113257 + L2 LINE L2 2438 2930 -384 918 54 0 0 chrY 2599956 2600068 -22113011 - AluSx SINE Alu -7 302 191 981 100 0 7 chrY 2600071 2600211 -22112868 - AluSx SINE Alu -174 139 1 756 21 0 0 chrY 2600607 2600700 -22112379 - AluY SINE Alu -2 309 217 2676 26 0 0 chrY 2601207 2601513 -22111566 - AluY SINE Alu -5 306 1 421 182 64 11 chrY 2603291 2603571 -22109508 + (TA)n Simple_repeat Simple_repeat 1 295 0 1573 167 28 24 chrY 2603714 2604001 -22109078 - AluJb SINE Alu -24 288 1 346 218 10 89 chrY 2604125 2604226 -22108853 - MIR3 SINE MIR -18 190 98 217 329 38 0 chrY 2604214 2604293 -22108786 - MIR SINE MIR -3 259 178 * 266 241 0 0 chrY 2605445 2605503 -22107576 - L2 LINE L2 -4 3268 3211 230 350 160 5 chrY 2605534 2605728 -22107351 + MIR SINE MIR 28 251 -11 306 243 90 36 chrY 2605737 2605848 -22107231 - MIR SINE MIR -56 206 90 250 365 39 10 chrY 2606167 2606271 -22106808 - MIR SINE MIR -72 136 30 294 266 40 65 chrY 2606390 2606514 -22106565 + MIR SINE MIR 30 150 -112 2206 149 61 28 chrY 2606601 2607105 -22105974 - MLT2A2 LTR ERVL -8 546 5 7340 97 10 5 chrY 2607109 2608172 -22104907 - HERVL-A2 LTR ERVL 0 5654 4545 367 351 34 13 chrY 2608576 2608792 -22104287 + MIR SINE MIR 18 241 -21 248 333 46 32 chrY 2608810 2609000 -22104079 - MIR SINE MIR -66 196 5 23 0 0 0 chrY 2609330 2609353 -22103726 + AT_rich Low_complexity Low_complexity 1 23 0 698 339 86 29 chrY 2609779 2610479 -22102600 + L2 LINE L2 1806 2545 -769 443 325 110 18 chrY 2610485 2610713 -22102366 - MIR SINE MIR 0 262 14 387 382 27 23 chrY 2610733 2610992 -22102087 + L2 LINE L2 2560 2819 -495 198 209 0 0 chrY 2611213 2611256 -22101823 + (TG)n Simple_repeat Simple_repeat 2 44 0 488 81 0 70 chrY 2611741 2611827 -22101252 - MADE1 DNA Mariner 0 80 1 546 222 25 49 chrY 2612064 2612226 -22100853 - L1ME4a LINE L1 -4 6117 5960 433 267 74 11 chrY 2612229 2612405 -22100674 - L1ME4a LINE L1 -264 5857 5671 1187 189 0 5 chrY 2612639 2612892 -22100187 - AluJb SINE Alu 0 312 89 298 325 162 7 chrY 2613997 2614151 -22098928 - MER5B DNA MER1_type 0 178 1 192 40 0 0 chrY 2614322 2614347 -22098732 + (TTAA)n Simple_repeat Simple_repeat 3 27 0 315 49 0 0 chrY 2614912 2614953 -22098126 + (CA)n Simple_repeat Simple_repeat 2 42 0 288 0 0 0 chrY 2614952 2614984 -22098095 + (GA)n Simple_repeat Simple_repeat 2 33 0 * 25 51 0 0 chrY 2614990 2615029 -22098050 + AT_rich Low_complexity Low_complexity 1 39 0 26 30 0 0 chrY 2615060 2615093 -22097986 + AT_rich Low_complexity Low_complexity 1 33 0 3146 89 2 0 chrY 2615173 2615612 -22097467 - L1PA13 LINE L1 -7 6156 5717 2768 124 2 47 chrY 2615612 2616073 -22097006 + L1P4 LINE L1 5041 5471 -697 2034 119 3 3 chrY 2616073 2616367 -22096712 + AluSx SINE Alu 1 294 -18 2768 124 2 47 chrY 2616367 2616573 -22096506 + L1P4 LINE L1 5471 5685 -483 23 0 0 0 chrY 2617137 2617160 -22095919 + AT_rich Low_complexity Low_complexity 1 23 0 1402 94 70 4 chrY 2617318 2617562 -22095517 - L1MA9 LINE L1 0 6312 6053 2540 118 5 19 chrY 2618861 2619284 -22093795 - L1MA3 LINE L1 0 6305 5889 4536 176 27 8 chrY 2619284 2620199 -22092880 - L1 LINE L1 -1445 4701 3769 14240 204 21 9 chrY 2620221 2625549 -22087530 + L1PBa LINE L1 1 5531 -1331 688 188 30 0 chrY 2625643 2625776 -22087303 - MLT1E2 LTR MaLR 0 626 490 6018 14 1 0 chrY 2626319 2627009 -22086070 - L1HS LINE L1 0 6155 5465 5313 19 10 0 chrY 2626999 2627732 -22085347 + L1P1 LINE L1 4753 5489 -666 * 4459 136 26 11 chrY 2630118 2630882 -22082197 - L1MC1 LINE L1 0 6333 5558 662 269 151 9 chrY 2631146 2631358 -22081721 - MIR SINE MIR 0 262 21 1903 125 33 111 chrY 2631400 2631768 -22081311 + Charlie3 DNA MER1_type 1 2712 0 902 107 23 0 chrY 2632057 2632188 -22080891 + HERVL-A2 LTR ERVL 5520 5653 -1 2077 160 49 31 chrY 2632189 2632732 -22080347 + MLT2A2 LTR ERVL 1 554 0 1865 100 55 17 chrY 2632737 2633027 -22080052 + L1PA16 LINE L1 5864 6164 -2 1590 239 100 28 chrY 2633049 2633510 -22079569 + MLT1D LTR MaLR 12 505 0 1964 163 22 8 chrY 2634049 2634410 -22078669 - MER47A DNA MER2_type 0 366 1 1182 241 14 58 chrY 2634982 2635035 -22078044 - MLT2D LTR ERVL 0 414 360 408 20 0 0 chrY 2635035 2635084 -22077995 + (CA)n Simple_repeat Simple_repeat 2 50 0 1182 241 14 58 chrY 2635084 2635378 -22077701 - MLT2D LTR ERVL -54 360 82 2095 143 40 3 chrY 2635657 2636034 -22077045 - L1MA5A LINE L1 -5 6292 5902 900 274 46 0 chrY 2636269 2636488 -22076591 - MIR SINE MIR -29 233 5 306 243 97 29 chrY 2636552 2636655 -22076424 - MIR3 SINE MIR -5 203 94 22 88 0 0 chrY 2638042 2638099 -22074980 + AT_rich Low_complexity Low_complexity 1 57 0 21 71 0 0 chrY 2638205 2638247 -22074832 + AT_rich Low_complexity Low_complexity 1 42 0 723 274 104 9 chrY 2638303 2638533 -22074546 - MIR SINE MIR -9 253 2 347 155 0 14 chrY 2639470 2639541 -22073538 + (TA)n Simple_repeat Simple_repeat 2 71 0 311 65 22 0 chrY 2640100 2640146 -22072933 + (TG)n Simple_repeat Simple_repeat 1 47 0 433 329 128 9 chrY 2640354 2640573 -22072506 + L3 LINE CR1 1331 1575 -2 2400 108 13 13 chrY 2640781 2641160 -22071919 - L1PA11 LINE L1 -3 6171 5793 358 321 9 32 chrY 2641296 2641594 -22071485 + GA-rich Low_complexity Low_complexity 1 291 0 296 111 19 0 chrY 2641613 2641667 -22071412 + (TG)n Simple_repeat Simple_repeat 1 55 0 3137 147 66 9 chrY 2644551 2645128 -22067951 - MER4B LTR ERV1 0 610 1 491 0 17 0 chrY 2645498 2645557 -22067522 + (TATAA)n Simple_repeat Simple_repeat 5 64 0 41 72 0 0 chrY 2645848 2645931 -22067148 + AT_rich Low_complexity Low_complexity 1 83 0 4754 257 62 56 chrY 2647194 2648936 -22064143 + L1MEc LINE L1 22 1751 -4645 1984 153 110 15 chrY 2648936 2649327 -22063752 + MSTA LTR MaLR 1 428 0 4754 257 62 56 chrY 2649327 2649517 -22063562 + L1MEc LINE L1 1751 1938 -4458 1455 194 25 18 chrY 2649517 2649800 -22063279 - AluJb SINE Alu -25 287 3 4754 257 62 56 chrY 2649800 2649977 -22063102 + L1MEc LINE L1 1938 2146 -4250 777 109 0 0 chrY 2649979 2650089 -22062990 + L1MA1 LINE L1 6099 6208 -94 4558 262 44 39 chrY 2650091 2651879 -22061200 + L1MEc LINE L1 2153 3910 -2305 3114 121 32 26 chrY 2651879 2652410 -22060669 + L1MC1 LINE L1 5798 6331 -2 4558 262 44 39 chrY 2652410 2652657 -22060422 + L1MEc LINE L1 3910 4154 -2061 405 0 0 0 chrY 2652991 2653036 -22060043 + (TG)n Simple_repeat Simple_repeat 2 46 0 486 0 0 0 chrY 2654016 2654070 -22059009 + (TA)n Simple_repeat Simple_repeat 2 55 0 23 33 0 0 chrY 2654665 2654695 -22058384 + AT_rich Low_complexity Low_complexity 1 30 0 354 297 54 9 chrY 2655136 2655247 -22057832 - MIR SINE MIR -76 186 71 23 54 0 0 chrY 2655308 2655345 -22057734 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chrY 2655638 2655659 -22057420 + AT_rich Low_complexity Low_complexity 1 21 0 1663 175 83 65 chrY 2657565 2658023 -22055056 - MER31B LTR ERV1 0 466 1 291 352 82 0 chrY 2658518 2658677 -22054402 + MIR3 SINE MIR 32 203 -5 2436 119 13 11 chrY 2659182 2659560 -22053519 - L1PB3 LINE L1 0 6154 5776 439 68 0 27 chrY 2659574 2659648 -22053431 + (TA)n Simple_repeat Simple_repeat 1 72 0 597 76 0 0 chrY 2659655 2659734 -22053345 - L1PB3 LINE L1 -366 5788 5710 382 250 76 0 chrY 2659781 2659873 -22053206 + L2 LINE L2 3179 3277 -36 7910 17 0 0 chrY 2660847 2661937 -22051142 - L1HS LINE L1 0 6155 5066 4880 102 20 12 chrY 2662720 2663471 -22049608 + L1MA1 LINE L1 5542 6298 -4 6185 102 12 1 chrY 2664086 2665544 -22047535 - L1PA11 LINE L1 0 6174 4705 9914 228 22 15 chrY 2665548 2668915 -22044164 - L1PA12 LINE L1 -3121 4463 9 4399 174 72 31 chrY 2669279 2669805 -22043274 - L1MA9 LINE L1 0 6312 5809 225 0 0 0 chrY 2669805 2669830 -22043249 + (TTCA)n Simple_repeat Simple_repeat 4 28 0 4399 174 72 31 chrY 2669830 2670544 -22042535 - L1MA9 LINE L1 -503 5809 5005 2082 136 3 0 chrY 2670544 2670852 -22042227 - AluSx SINE Alu -3 309 1 4399 174 72 31 chrY 2670852 2671168 -22041911 - L1MA9 LINE L1 -1307 5005 4703 4793 180 39 8 chrY 2671169 2671836 -22041243 + L1 LINE L1 3695 4340 -1806 2632 95 16 3 chrY 2671836 2672205 -22040874 - THE1C LTR MaLR -1 374 1 9654 142 11 32 chrY 2672205 2673819 -22039260 - THE1C-int LTR MaLR 0 1580 1 2635 117 0 3 chrY 2673819 2674195 -22038884 - THE1C LTR MaLR 0 375 1 4793 180 39 8 chrY 2674195 2674498 -22038581 + L1 LINE L1 4339 4697 -1449 2342 174 33 31 chrY 2675980 2676434 -22036645 - LOR1b LTR ERV1 -6 455 1 1769 58 8 8 chrY 2676550 2676790 -22036289 + L1PA6 LINE L1 5912 6151 -3 22 0 0 0 chrY 2676864 2676886 -22036193 + AT_rich Low_complexity Low_complexity 1 22 0 2260 90 0 27 chrY 2676933 2677267 -22035812 - L1PA8 LINE L1 0 6172 5848 2077 111 17 54 chrY 2677383 2677733 -22035346 + MER1B DNA MER1_type 1 337 0 215 284 136 0 chrY 2678038 2678126 -22034953 - MIR SINE MIR -111 151 52 224 360 61 0 chrY 2678531 2678645 -22034434 - MIR SINE MIR -67 141 21 1763 166 13 3 chrY 2679628 2679935 -22033144 + AluJo SINE Alu 2 311 -1 398 277 51 0 chrY 2679952 2680089 -22032990 + MIR SINE MIR 10 153 -109 704 139 61 0 chrY 2680089 2680204 -22032875 - LTR12 LTR ERV1 -234 480 359 350 210 0 0 chrY 2680204 2680285 -22032794 - LTR30 LTR ERV1 -98 624 544 1675 71 6 166 chrY 2680288 2680614 -22032465 - LTR12 LTR ERV1 -440 274 1 221 303 176 0 chrY 2680784 2680903 -22032176 + MIR SINE MIR 120 259 -3 778 161 54 0 chrY 2681896 2682045 -22031034 + L1MA8 LINE L1 5968 6124 -167 * 5511 23 2 10 chrY 2682038 2682903 -22030176 - L1PA2 LINE L1 -588 5567 4712 5297 66 3 17 chrY 2682865 2683617 -22029462 + L1PA2 LINE L1 5555 6260 -31 * 2438 89 0 0 chrY 2683617 2683921 -22029158 - AluSx SINE Alu -8 304 1 5297 66 3 17 chrY 2683921 2683952 -22029127 + L1PA2 LINE L1 6260 6290 -1 24 0 0 0 chrY 2684074 2684098 -22028981 + AT_rich Low_complexity Low_complexity 1 24 0 2939 266 88 27 chrY 2684368 2684752 -22028327 - L2 LINE L2 -214 3099 2740 2290 88 10 0 chrY 2684752 2685060 -22028019 - AluSp SINE Alu -2 311 1 2939 266 88 27 chrY 2685060 2685790 -22027289 - L2 LINE L2 -573 2740 1922 1129 167 0 0 chrY 2686056 2686242 -22026837 - AluJb SINE Alu -8 304 119 399 331 42 83 chrY 2688239 2688599 -22024480 + L2 LINE L2 2927 3271 -1 559 281 2 0 chrY 2689485 2689625 -22023454 - MIR SINE MIR -66 142 1 1142 152 193 16 chrY 2690499 2690742 -22022337 - AluJo SINE Alu -16 286 1 25 0 0 0 chrY 2690946 2690971 -22022108 + AT_rich Low_complexity Low_complexity 1 25 0 526 155 6 39 chrY 2690975 2691156 -22021923 + (TA)n Simple_repeat Simple_repeat 1 175 0 1188 124 10 36 chrY 2691619 2691813 -22021266 - THE1B LTR MaLR 0 364 176 195 259 35 71 chrY 2693392 2693477 -22019602 - L3 LINE CR1 -622 955 874 1098 131 33 25 chrY 2693600 2693816 -22019263 - THE1B LTR MaLR -161 214 1 1334 298 90 52 chrY 2694408 2695227 -22017852 - L1MEd LINE L1 -5267 852 3 2103 95 25 0 chrY 2695262 2695536 -22017543 + AluSg SINE Alu 1 317 0 230 0 83 0 chrY 2695536 2695572 -22017507 + (TAAA)n Simple_repeat Simple_repeat 2 180 0 1727 218 73 19 chrY 2696468 2696936 -22016143 - MLT1D LTR MaLR -6 499 7 1911 154 11 0 chrY 2697127 2697412 -22015667 - AluSx SINE Alu -24 288 1 21 0 0 0 chrY 2698062 2698083 -22014996 + AT_rich Low_complexity Low_complexity 1 21 0 343 305 15 8 chrY 2698210 2698341 -22014738 + CT-rich Low_complexity Low_complexity 3 134 0 198 47 0 70 chrY 2699277 2699311 -22013768 + (GAAAA)n Simple_repeat Simple_repeat 2 34 -7 2210 112 0 3 chrY 2699311 2699623 -22013456 + AluY SINE Alu 1 311 0 198 47 0 70 chrY 2699623 2699631 -22013448 + (GAAAA)n Simple_repeat Simple_repeat 34 41 0 246 240 53 0 chrY 2699748 2699823 -22013256 - MER103 DNA DNA -58 108 30 4733 215 35 90 chrY 2699823 2700188 -22012891 - L1MDa LINE L1 -4905 1635 1251 572 195 0 0 chrY 2700188 2700316 -22012763 - L1MA6 LINE L1 -5 6295 6168 4733 215 35 90 chrY 2700316 2701543 -22011536 - L1MDa LINE L1 -5289 1251 131 22 70 0 0 chrY 2701819 2701862 -22011217 + AT_rich Low_complexity Low_complexity 1 43 0 331 286 185 0 chrY 2702778 2702897 -22010182 - MIR SINE MIR -65 197 57 252 406 0 0 chrY 2703035 2703131 -22009948 - L2 LINE L2 -16 3256 3161 22 35 0 0 chrY 2703561 2703590 -22009489 + AT_rich Low_complexity Low_complexity 1 29 0 4824 177 41 35 chrY 2704082 2705881 -22007198 - L1MA9 LINE L1 0 6312 4527 2378 66 30 3 chrY 2705881 2706184 -22006895 - AluY SINE Alu 0 311 1 2309 88 3 10 chrY 2706184 2706492 -22006587 - AluSq SINE Alu -7 306 1 4824 177 41 35 chrY 2706492 2706573 -22006506 - L1MA9 LINE L1 -1784 4528 4411 2359 176 7 25 chrY 2706573 2707010 -22006069 + Tigger2a DNA MER2_type 1 429 -5 4869 180 34 23 chrY 2707030 2707959 -22005120 - L1MA9 LINE L1 -1754 4392 3446 2191 129 0 0 chrY 2707959 2708269 -22004810 - AluSx SINE Alu -1 311 2 4869 180 34 23 chrY 2708269 2708488 -22004591 - L1MA9 LINE L1 -2700 3446 3231 215 404 22 29 chrY 2708751 2708887 -22004192 + L2 LINE L2 3119 3253 -19 1669 190 7 7 chrY 2708920 2709230 -22003849 - AluJb SINE Alu -2 310 1 19410 177 17 15 chrY 2710456 2711475 -22001604 - L1MA1 LINE L1 -5 7716 6701 2282 107 3 0 chrY 2711475 2711784 -22001295 - AluSp SINE Alu -3 310 1 19410 177 17 15 chrY 2711784 2714781 -21998298 - L1MA1 LINE L1 -1020 6701 3712 2452 75 3 0 chrY 2714781 2715087 -21997992 - AluY SINE Alu -4 307 1 19410 177 17 15 chrY 2715087 2718740 -21994339 - L1MA1 LINE L1 -4009 3712 14 2157 113 3 7 chrY 2719710 2720019 -21993060 - AluSx SINE Alu -4 308 1 3953 170 20 0 chrY 2720740 2721429 -21991650 - L1PA16 LINE L1 -2 6164 5462 318 364 52 13 chrY 2721800 2721954 -21991125 - MIR3 SINE MIR -14 194 35 24 0 0 0 chrY 2721964 2721988 -21991091 + AT_rich Low_complexity Low_complexity 1 24 0 13532 138 13 65 chrY 2722754 2722927 -21990152 - Tigger1 DNA MER2_type -1 2417 2237 11474 32 1 1 chrY 2722927 2725061 -21988018 + L1PA4 LINE L1 4022 6155 0 13532 138 13 65 chrY 2725061 2725079 -21988000 - Tigger1 DNA MER2_type -181 2237 2220 258 81 0 0 chrY 2725079 2725116 -21987963 + (TAAAA)n Simple_repeat Simple_repeat 2 38 0 13532 138 13 65 chrY 2725116 2727190 -21985889 - Tigger1 DNA MER2_type -198 2220 40 1237 114 10 0 chrY 2727190 2727391 -21985688 + L1MA2 LINE L1 6102 6304 0 13532 138 13 65 chrY 2727391 2727445 -21985634 - Tigger1 DNA MER2_type -2378 40 236 1655 164 0 41 chrY 2727445 2727738 -21985341 + AluSx SINE Alu 5 285 -27 13532 138 13 65 chrY 2727738 2727964 -21985115 - Tigger1 DNA MER2_type -2181 237 1 398 358 11 21 chrY 2728501 2728691 -21984388 - MARNA DNA Mariner -398 188 1 1783 183 30 3 chrY 2729023 2729323 -21983756 + L1PA13 LINE L1 2 309 -6478 * 2035 242 17 0 chrY 2729311 2729778 -21983301 + L1P LINE L1 2551 3025 -3121 25406 151 20 16 chrY 2729802 2735368 -21977711 + L1PA13 LINE L1 339 5990 -807 5876 109 12 2 chrY 2735367 2736232 -21976847 + L1PA13 LINE L1 5266 6138 -25 * 1148 202 37 0 chrY 2736232 2736475 -21976604 + MER58B DNA MER1_type 90 341 0 21 0 0 0 chrY 2738035 2738056 -21975023 + AT_rich Low_complexity Low_complexity 1 21 0 970 265 109 3 chrY 2738427 2738740 -21974339 + L2 LINE L2 2556 2901 -413 2131 116 0 0 chrY 2740009 2740294 -21972785 - AluSc SINE Alu -24 285 1 7789 161 15 6 chrY 2740386 2742891 -21970188 - L1MA2 LINE L1 0 7723 5194 1305 183 39 4 chrY 2742904 2743134 -21969945 - AluJb SINE Alu -73 239 2 9395 176 20 12 chrY 2743135 2746320 -21966759 - L1MA2 LINE L1 -2360 5205 1994 2060 149 30 25 chrY 2746331 2746693 -21966386 + THE1B LTR MaLR 1 364 0 2670 80 11 0 chrY 2746693 2747057 -21966022 + THE1B-int LTR MaLR 1 368 -1212 285 29 0 0 chrY 2747059 2747093 -21965986 + (TTTTA)n Simple_repeat Simple_repeat 1 34 0 6081 92 17 27 chrY 2747093 2748048 -21965031 - L1PA8 LINE L1 -24 6148 5199 4286 125 16 0 chrY 2748037 2748661 -21964418 + THE1B-int LTR MaLR 350 983 -597 * 283 75 0 0 chrY 2748653 2748693 -21964386 + THE1B-int LTR MaLR 1541 1580 0 * 2153 146 34 14 chrY 2748693 2749049 -21964030 + THE1B LTR MaLR 1 363 -1 424 232 0 0 chrY 2749077 2749159 -21963920 - L1MA2 LINE L1 -5656 1909 1828 8781 190 40 10 chrY 2749170 2750805 -21962274 - L1MA2 LINE L1 -5861 1704 21 1071 150 9 9 chrY 2751010 2751223 -21961856 - L1MA4A LINE L1 -1 6302 6090 2194 112 3 0 chrY 2751728 2752022 -21961057 + AluSg SINE Alu 1 295 -15 28 0 0 0 chrY 2752191 2752219 -21960860 + AT_rich Low_complexity Low_complexity 1 28 0 32 0 0 0 chrY 2752244 2752276 -21960803 + AT_rich Low_complexity Low_complexity 1 32 0 2249 91 3 13 chrY 2752671 2752979 -21960100 - AluSg1 SINE Alu -4 305 1 25 0 0 0 chrY 2754151 2754176 -21958903 + AT_rich Low_complexity Low_complexity 1 25 0 2245 104 3 0 chrY 2755699 2755997 -21957082 + AluSx SINE Alu 1 299 -13 761 272 30 5 chrY 2756104 2756306 -21956773 - MER63A DNA MER1_type -3 207 1 5477 74 12 19 chrY 2758761 2759533 -21953546 - MER4E LTR ERV1 0 766 1 25 51 0 0 chrY 2759687 2759726 -21953353 + AT_rich Low_complexity Low_complexity 1 39 0 1962 120 27 3 chrY 2759818 2760118 -21952961 - AluSq SINE Alu -6 307 1 658 233 14 20 chrY 2760506 2760652 -21952427 + MIR SINE MIR 4 148 -114 209 330 34 42 chrY 2760701 2760819 -21952260 + L2 LINE L2 3192 3308 -5 408 236 9 0 chrY 2761835 2761941 -21951138 + L1MB7 LINE L1 6066 6172 -12 2282 95 7 0 chrY 2763625 2763919 -21949160 - AluSg SINE Alu -11 299 4 331 301 91 50 chrY 2763929 2764128 -21948951 - MIR SINE MIR -22 240 34 2593 64 3 0 chrY 2764593 2764904 -21948175 + AluSp SINE Alu 2 313 0 5701 92 19 14 chrY 2765612 2766755 -21946324 - L1PA13 LINE L1 -3 6160 4980 26 88 0 0 chrY 2766760 2766828 -21946251 + AT_rich Low_complexity Low_complexity 1 68 0 816 214 17 12 chrY 2768289 2768462 -21944617 + L1PB4 LINE L1 5980 6153 -3 21 0 0 0 chrY 2768541 2768562 -21944517 + AT_rich Low_complexity Low_complexity 1 21 0 246 271 36 79 chrY 2769338 2769478 -21943601 - MIR SINE MIR -55 207 74 5953 184 25 7 chrY 2770374 2771832 -21941247 - L1PA15 LINE L1 -3 6813 5298 180 97 0 0 chrY 2771832 2771863 -21941216 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5953 184 25 7 chrY 2771863 2772580 -21940499 - L1PA15 LINE L1 -1518 5298 4595 6481 54 8 0 chrY 2772580 2773399 -21939680 + L1PA7 LINE L1 5329 6154 0 28 0 0 0 chrY 2773410 2773438 -21939641 + AT_rich Low_complexity Low_complexity 1 28 0 3224 281 22 15 chrY 2773438 2774354 -21938725 - L1PA15 LINE L1 -4818 1969 1048 866 234 4 51 chrY 2774434 2774558 -21938521 - L1ME2 LINE L1 -16 6148 6041 286 23 47 0 chrY 2774558 2774601 -21938478 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 866 234 4 51 chrY 2774601 2774732 -21938347 - L1ME2 LINE L1 -123 6041 5905 13392 172 40 25 chrY 2775212 2776887 -21936192 - L1MA2 LINE L1 -450 7273 5624 1900 159 3 0 chrY 2776887 2777177 -21935902 + AluSx SINE Alu 2 292 -20 13392 172 40 25 chrY 2777177 2778619 -21934460 - L1MA2 LINE L1 -2099 5624 4205 2123 127 0 0 chrY 2778619 2778903 -21934176 - AluSx SINE Alu -28 284 1 13392 172 40 25 chrY 2778903 2779741 -21933338 - L1MA2 LINE L1 -3518 4205 3381 1927 157 0 14 chrY 2779741 2780034 -21933045 - AluSx SINE Alu -23 289 1 13392 172 40 25 chrY 2780034 2780850 -21932229 - L1MA2 LINE L1 -4342 3381 2579 2146 119 0 17 chrY 2780850 2781152 -21931927 - AluSg SINE Alu -12 298 2 13392 172 40 25 chrY 2781152 2783438 -21929641 - L1MA2 LINE L1 -5144 2579 11 344 378 10 31 chrY 2785305 2785498 -21927581 - MER5A DNA MER1_type 0 189 1 251 248 103 43 chrY 2785820 2785937 -21927142 - MIR SINE MIR -66 196 73 443 313 27 0 chrY 2787114 2787226 -21925853 - L2 LINE L2 -2 3270 3156 182 365 16 0 chrY 2787297 2787360 -21925719 + L2 LINE L2 3205 3268 -4 188 466 0 8 chrY 2787377 2787510 -21925569 + MIR SINE MIR 16 147 -61 525 32 0 0 chrY 2787664 2787727 -21925352 + (GGAA)n Simple_repeat Simple_repeat 3 65 0 644 158 88 0 chrY 2789114 2789228 -21923851 - MLT1D LTR MaLR -22 483 360 824 254 29 10 chrY 2789262 2789467 -21923612 - MER82 DNA MER2_type -1 652 444 308 342 50 20 chrY 2789498 2789697 -21923382 + MIR SINE MIR 1 205 -57 393 250 0 21 chrY 2789717 2789813 -21923266 - MER82 DNA MER2_type -559 94 1 1484 230 83 35 chrY 2789924 2790406 -21922673 + MLT1D LTR MaLR 1 505 0 2736 173 38 6 chrY 2790643 2791168 -21921911 - MER34 LTR ERV1 0 542 1 281 165 51 51 chrY 2791193 2791272 -21921807 + MER69 DNA AcHobo 67 145 -1081 278 217 0 0 chrY 2791296 2791356 -21921723 + MER69 DNA AcHobo 2467 2526 0 318 132 0 0 chrY 2791761 2791814 -21921265 + (CA)n Simple_repeat Simple_repeat 2 54 0 626 306 5 24 chrY 2791997 2792203 -21920876 - MIR SINE MIR -48 214 13 2144 86 7 11 chrY 2793854 2794133 -21918946 + AluSg SINE Alu 1 278 -32 2118 123 3 0 chrY 2794272 2794573 -21918506 + AluSp SINE Alu 1 302 -11 670 253 154 6 chrY 2794991 2795297 -21917782 - MER57A LTR ERV1 -4 398 60 238 338 12 0 chrY 2795310 2795390 -21917689 - MER93a LTR ERV1 -321 81 1 180 0 0 0 chrY 2795495 2795515 -21917564 + (A)n Simple_repeat Simple_repeat 1 20 0 1178 215 56 34 chrY 2795841 2796164 -21916915 + MER33 DNA MER1_type 1 316 -8 193 75 50 0 chrY 2796276 2796316 -21916763 + A-rich Low_complexity Low_complexity 3 44 0 3668 95 21 83 chrY 2796780 2797162 -21915917 - LTR66 LTR ERVL 0 610 283 2103 113 13 3 chrY 2797162 2797464 -21915615 - AluSp SINE Alu -8 305 1 3668 95 21 83 chrY 2797464 2797731 -21915348 - LTR66 LTR ERVL -327 283 1 229 129 69 0 chrY 2797976 2798092 -21914987 + (TA)n Simple_repeat Simple_repeat 1 124 0 189 0 0 0 chrY 2799026 2799047 -21914032 + (CAAAA)n Simple_repeat Simple_repeat 1 21 0 2420 99 0 0 chrY 2799617 2799921 -21913158 - AluSq SINE Alu -8 305 2 5542 70 16 19 chrY 2801469 2802238 -21910841 - MER4E LTR ERV1 0 766 1 1375 163 11 70 chrY 2802399 2802766 -21910313 - MER4A LTR ERV1 0 664 261 511 132 22 11 chrY 2802767 2802858 -21910221 - MER4A LTR ERV1 -572 92 1 2208 138 66 17 chrY 2802860 2803267 -21909812 + MSTA LTR MaLR 2 428 0 297 0 0 0 chrY 2804187 2804220 -21908859 + (TG)n Simple_repeat Simple_repeat 2 34 0 23 0 0 0 chrY 2804227 2804250 -21908829 + AT_rich Low_complexity Low_complexity 1 23 0 279 114 0 0 chrY 2806463 2806507 -21906572 + (TG)n Simple_repeat Simple_repeat 2 45 0 1969 119 53 44 chrY 2806541 2806902 -21906177 - THE1B LTR MaLR 0 364 1 1536 185 34 7 chrY 2807161 2807453 -21905626 + AluJo SINE Alu 1 300 -12 213 164 18 55 chrY 2807723 2807756 -21905323 + (TATATG)n Simple_repeat Simple_repeat 6 38 -20 1296 186 83 31 chrY 2807756 2808083 -21904996 + MER2 DNA MER2_type 1 344 0 213 164 18 55 chrY 2808083 2808104 -21904975 + (TATATG)n Simple_repeat Simple_repeat 38 58 0 22 0 0 0 chrY 2808428 2808450 -21904629 + AT_rich Low_complexity Low_complexity 1 22 0 2410 94 3 0 chrY 2808661 2808970 -21904109 - AluSp SINE Alu -3 310 1 24 0 0 0 chrY 2810118 2810142 -21902937 + AT_rich Low_complexity Low_complexity 1 24 0 3294 69 5 7 chrY 2810260 2810709 -21902370 - LTR7 LTR ERV1 -2 448 1 2267 84 65 14 chrY 2810709 2811080 -21901999 - HERVH LTR ERV1 0 7713 7324 1326 119 18 9 chrY 2811080 2811298 -21901781 - HERVH LTR ERV1 -1894 5819 5600 3933 146 11 3 chrY 2811299 2811956 -21901123 - HERVH LTR ERV1 -2564 5149 4488 3146 113 4 6 chrY 2811958 2812461 -21900618 - HERVH LTR ERV1 -3720 3993 3492 816 155 20 0 chrY 2812451 2812599 -21900480 - HERVH LTR ERV1 -4423 3290 3140 * 14417 110 26 17 chrY 2812593 2815449 -21897630 - HERVH LTR ERV1 -4726 2987 1 3465 56 2 7 chrY 2815451 2815901 -21897178 - LTR7 LTR ERV1 -2 448 1 322 362 62 18 chrY 2816136 2816412 -21896667 - L1M4 LINE L1 -1491 4655 4368 3263 124 53 51 chrY 2816763 2817368 -21895711 + MER4B LTR ERV1 5 610 0 1687 53 5 5 chrY 2817448 2817655 -21895424 + AluSp SINE Alu 1 207 -106 1791 68 0 0 chrY 2817656 2817891 -21895188 + MER4E LTR ERV1 532 766 0 3011 142 29 107 chrY 2818899 2819094 -21893985 - LTR8 LTR ERV1 0 691 482 1954 107 50 11 chrY 2819094 2819375 -21893704 + AluSx SINE Alu 1 292 -20 3011 142 29 107 chrY 2819375 2819928 -21893151 - LTR8 LTR ERV1 -209 482 1 523 128 248 8 chrY 2820379 2820496 -21892583 - MER4C LTR ERV1 -21 444 300 1059 177 125 26 chrY 2820558 2820869 -21892210 - MER4A LTR ERV1 -322 342 1 216 0 0 0 chrY 2821212 2821236 -21891843 + (A)n Simple_repeat Simple_repeat 1 24 0 23 33 0 0 chrY 2821471 2821501 -21891578 + AT_rich Low_complexity Low_complexity 1 30 0 393 323 63 32 chrY 2821570 2821729 -21891350 - MIR3 SINE MIR -9 199 32 1951 67 86 4 chrY 2821729 2822022 -21891057 - AluY SINE Alu 0 311 1 393 323 63 32 chrY 2822022 2822051 -21891028 - MIR3 SINE MIR -176 32 5 204 40 0 0 chrY 2822074 2822099 -21890980 + (A)n Simple_repeat Simple_repeat 1 25 0 1825 92 92 4 chrY 2824801 2825102 -21887977 - AluSx SINE Alu 0 324 1 1853 230 69 41 chrY 2825419 2825958 -21887121 - MLT2B3 LTR ERVL 0 554 1 180 77 0 0 chrY 2826562 2826588 -21886491 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 1742 163 3 7 chrY 2826592 2826881 -21886198 - AluJb SINE Alu -24 288 1 26 0 0 0 chrY 2826884 2826910 -21886169 + AT_rich Low_complexity Low_complexity 1 26 0 310 396 0 0 chrY 2826966 2827105 -21885974 + MIR3 SINE MIR 64 202 -6 2011 116 7 3 chrY 2827153 2827446 -21885633 + AluSq SINE Alu 6 299 -14 2551 57 0 0 chrY 2828729 2829026 -21884053 - AluY SINE Alu -14 297 1 202 147 53 53 chrY 2829046 2829103 -21883976 + (TTAA)n Simple_repeat Simple_repeat 2 61 -15 1859 142 10 7 chrY 2829103 2829392 -21883687 - AluJb SINE Alu -22 290 1 202 147 53 53 chrY 2829392 2829409 -21883670 + (TTAA)n Simple_repeat Simple_repeat 60 76 0 25 75 0 0 chrY 2829640 2829693 -21883386 + AT_rich Low_complexity Low_complexity 1 53 0 2210 109 0 0 chrY 2830137 2830439 -21882640 - AluSg1 SINE Alu -7 302 1 2372 92 3 0 chrY 2831127 2831432 -21881647 - AluSx SINE Alu -2 310 5 1534 80 11 0 chrY 2831698 2831909 -21881170 - AluSc SINE Alu 0 305 93 2086 110 11 0 chrY 2831957 2832269 -21880810 - AluSq SINE Alu 0 315 1 2033 127 0 0 chrY 2832650 2832934 -21880145 + AluSx SINE Alu 9 292 -20 987 310 163 23 chrY 2833349 2834173 -21878906 + L2 LINE L2 2098 3066 -247 487 256 60 88 chrY 2834251 2834321 -21878758 - MER102b DNA MER1_type -1087 341 271 1970 144 7 0 chrY 2834321 2834613 -21878466 + AluSp SINE Alu 1 294 -19 487 256 60 88 chrY 2834613 2834893 -21878186 - MER102b DNA MER1_type -1157 271 1 591 266 32 7 chrY 2834899 2835053 -21878026 + L2 LINE L2 3156 3313 0 1265 71 0 0 chrY 2835701 2835869 -21877210 - L1PA5 LINE L1 0 6154 5987 2214 112 0 0 chrY 2835897 2836213 -21876866 + AluSq SINE Alu 1 316 0 2243 114 7 0 chrY 2836384 2836692 -21876387 + AluSp SINE Alu 2 311 -2 34 55 0 0 chrY 2836692 2836747 -21876332 + AT_rich Low_complexity Low_complexity 1 55 0 381 22 0 0 chrY 2836769 2836815 -21876264 + (TG)n Simple_repeat Simple_repeat 2 47 0 22 0 0 0 chrY 2836861 2836883 -21876196 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chrY 2837266 2837296 -21875783 + AT_rich Low_complexity Low_complexity 1 30 0 2233 106 0 7 chrY 2837592 2837895 -21875184 - AluSg SINE Alu -9 301 1 2216 103 0 7 chrY 2838476 2838777 -21874302 - AluSx SINE Alu -13 299 1 25 31 0 0 chrY 2838815 2838847 -21874232 + AT_rich Low_complexity Low_complexity 1 32 0 22 70 0 0 chrY 2839057 2839100 -21873979 + AT_rich Low_complexity Low_complexity 1 43 0 2115 93 4 4 chrY 2839191 2839471 -21873608 + AluSg SINE Alu 1 280 -30 948 297 86 26 chrY 2839497 2839988 -21873091 - MER34 LTR ERV1 -18 524 5 243 146 0 0 chrY 2840040 2840081 -21872998 + (CA)n Simple_repeat Simple_repeat 2 42 0 2326 77 7 17 chrY 2840451 2840751 -21872328 + AluSp SINE Alu 3 299 -14 4633 70 55 23 chrY 2841507 2842068 -21871011 - PABL_A LTR ERV1 0 660 118 2366 81 0 26 chrY 2842068 2842378 -21870701 + AluSq SINE Alu 1 302 -11 2263 83 0 17 chrY 2842378 2842678 -21870401 + AluSc SINE Alu 1 295 -14 504 117 0 0 chrY 2842679 2842756 -21870323 + (TA)n Simple_repeat Simple_repeat 2 78 0 4633 70 55 23 chrY 2842756 2842831 -21870248 - PABL_A LTR ERV1 -541 119 1 30 45 0 0 chrY 2843081 2843125 -21869954 + AT_rich Low_complexity Low_complexity 1 44 0 2183 102 7 0 chrY 2843404 2843709 -21869370 - AluSp SINE Alu -6 307 1 3666 101 21 62 chrY 2843834 2844460 -21868619 - MER4A LTR ERV1 0 600 1 189 0 0 0 chrY 2844520 2844541 -21868538 + (A)n Simple_repeat Simple_repeat 1 21 0 3541 107 57 0 chrY 2844570 2845094 -21867985 - MER41A LTR ERV1 0 554 1 345 47 0 0 chrY 2845796 2845839 -21867240 + (TG)n Simple_repeat Simple_repeat 1 43 0 793 231 74 9 chrY 2846230 2846446 -21866633 - L2 LINE L2 -280 3033 2804 1048 254 17 7 chrY 2846465 2846760 -21866319 + MER58B DNA MER1_type 44 341 0 529 268 12 48 chrY 2846767 2846935 -21866144 - L2 LINE L2 -507 2807 2646 998 186 12 0 chrY 2847033 2847205 -21865874 - FAM SINE Alu 0 175 2 1448 153 10 45 chrY 2847577 2847891 -21865188 - L1MB8 LINE L1 -15 6163 5861 3296 89 9 2 chrY 2847896 2848358 -21864721 - L1PA10 LINE L1 -2 6166 5702 225 135 27 81 chrY 2848507 2848581 -21864498 + A-rich Low_complexity Low_complexity 1 70 0 2175 90 42 3 chrY 2849315 2849604 -21863475 - AluSg SINE Alu 0 310 11 203 294 18 18 chrY 2850177 2850286 -21862793 + (TA)n Simple_repeat Simple_repeat 1 109 0 21 0 0 0 chrY 2851682 2851703 -21861376 + AT_rich Low_complexity Low_complexity 1 21 0 1847 79 18 129 chrY 2852197 2852537 -21860542 - AluSp SINE Alu -1 302 1 2855 16 0 6 chrY 2852839 2853159 -21859920 - AluYb8 SINE Alu 0 318 1 419 186 10 0 chrY 2853215 2853317 -21859762 + (CA)n Simple_repeat Simple_repeat 2 104 0 1538 198 0 11 chrY 2853355 2853638 -21859441 + AluJb SINE Alu 1 280 -32 7392 94 5 17 chrY 2853640 2854678 -21858401 + THE1A-int LTR MaLR 556 1580 0 2463 91 3 0 chrY 2854678 2855008 -21858071 + THE1A LTR MaLR 1 331 -24 22 0 0 0 chrY 2855955 2855977 -21857102 + AT_rich Low_complexity Low_complexity 1 22 0 2105 128 0 0 chrY 2857089 2857387 -21855692 + AluSx SINE Alu 1 298 -14 941 111 6 18 chrY 2858159 2858282 -21854797 + (TTCC)n Simple_repeat Simple_repeat 1 290 0 941 111 6 18 chrY 2858282 2858453 -21854626 + (TTCC)n Simple_repeat Simple_repeat 3 171 0 798 177 0 17 chrY 2858470 2858651 -21854428 + CT-rich Low_complexity Low_complexity 3 180 0 2068 98 39 0 chrY 2858671 2858957 -21854122 - AluSx SINE Alu -15 297 1 23 33 0 0 chrY 2859056 2859086 -21853993 + AT_rich Low_complexity Low_complexity 1 30 0 198 143 0 0 chrY 2859184 2859219 -21853860 + (TA)n Simple_repeat Simple_repeat 2 36 0 297 0 0 0 chrY 2859219 2859252 -21853827 + (CA)n Simple_repeat Simple_repeat 2 34 0 189 74 0 0 chrY 2859857 2859884 -21853195 + (TC)n Simple_repeat Simple_repeat 2 28 0 180 0 0 0 chrY 2859885 2859905 -21853174 + (TG)n Simple_repeat Simple_repeat 1 20 0 369 109 0 0 chrY 2859905 2859960 -21853119 + (TA)n Simple_repeat Simple_repeat 1 55 0 2907 258 25 22 chrY 2860025 2860931 -21852148 - L1ME1 LINE L1 -1 6165 5257 253 212 0 15 chrY 2861012 2861078 -21852001 - L1ME1 LINE L1 -1465 4681 4617 1082 266 143 22 chrY 2861081 2861613 -21851466 - L1ME1 LINE L1 -1592 4554 3929 2371 71 0 0 chrY 2861613 2861936 -21851143 - AluY SINE Alu 0 311 1 1082 266 143 22 chrY 2861936 2862047 -21851032 - L1ME1 LINE L1 -2217 3929 3833 22 0 0 0 chrY 2862837 2862859 -21850220 + AT_rich Low_complexity Low_complexity 1 22 0 39 50 0 0 chrY 2863134 2863194 -21849885 + AT_rich Low_complexity Low_complexity 1 60 0 198 0 0 0 chrY 2863194 2863216 -21849863 + (TATG)n Simple_repeat Simple_repeat 3 24 0 2167 98 40 0 chrY 2863216 2863512 -21849567 - AluSx SINE Alu -4 308 1 297 0 0 0 chrY 2863762 2863795 -21849284 + (CA)n Simple_repeat Simple_repeat 2 34 0 3876 128 71 46 chrY 2864864 2865628 -21847451 + LTR1 LTR ERV1 1 783 -2 1104 245 93 117 chrY 2865835 2866052 -21847027 + L2 LINE L2 2374 2595 -718 2458 62 0 10 chrY 2866052 2866361 -21846718 - AluY SINE Alu -4 307 2 1104 245 93 117 chrY 2866361 2867105 -21845974 + L2 LINE L2 2595 3313 0 22 80 0 0 chrY 2868222 2868272 -21844807 + AT_rich Low_complexity Low_complexity 1 50 0 2070 128 0 7 chrY 2868393 2868698 -21844381 + AluSq SINE Alu 1 303 -10 1542 135 0 0 chrY 2868775 2868997 -21844082 + AluSg/x SINE Alu 87 308 -4 2144 109 0 0 chrY 2869106 2869390 -21843689 - AluSc SINE Alu -25 284 1 26 50 0 0 chrY 2869853 2869893 -21843186 + AT_rich Low_complexity Low_complexity 1 40 0 1642 156 158 18 chrY 2870091 2870527 -21842552 - LTR54B LTR ERV1 -1 497 1 219 114 0 0 chrY 2870536 2870571 -21842508 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2925 135 12 6 chrY 2870620 2871429 -21841650 - L1PB1 LINE L1 0 6867 5922 * 8645 132 51 9 chrY 2871422 2872502 -21840577 - L1PB1 LINE L1 -4152 2711 1678 2173 129 0 0 chrY 2872502 2872797 -21840282 - AluSx SINE Alu -15 297 3 8645 132 51 9 chrY 2872797 2874177 -21838902 - L1PB1 LINE L1 -5185 1678 2 2327 125 5 35 chrY 2875012 2875387 -21837692 + THE1B LTR MaLR 1 364 0 21 0 0 0 chrY 2876407 2876428 -21836651 + AT_rich Low_complexity Low_complexity 1 21 0 1483 216 14 7 chrY 2876923 2877219 -21835860 + AluJo SINE Alu 1 298 -14 2486 45 0 0 chrY 2877576 2877863 -21835216 + AluY SINE Alu 15 301 -10 1557 193 0 0 chrY 2878596 2878850 -21834229 - AluJb SINE Alu -58 254 1 1493 173 108 0 chrY 2878883 2879208 -21833871 + AluJb SINE Alu 5 359 0 529 266 76 11 chrY 2879315 2879499 -21833580 - MIR3 SINE MIR -5 203 8 268 235 0 0 chrY 2880326 2880377 -21832702 - L2 LINE L2 -9 3304 3254 309 270 21 159 chrY 2880443 2880632 -21832447 - L2 LINE L2 -55 3217 3055 1231 173 20 123 chrY 2881219 2881413 -21831666 - AluJo SINE Alu -5 307 161 2237 115 0 0 chrY 2881413 2881726 -21831353 - AluSq SINE Alu 0 313 1 1231 173 20 123 chrY 2881726 2881873 -21831206 - AluJo SINE Alu -151 161 1 223 184 0 0 chrY 2881958 2881998 -21831081 - MIR SINE MIR -63 145 111 293 259 47 12 chrY 2882043 2882128 -21830951 - MER5B DNA MER1_type -2 176 89 1675 256 130 19 chrY 2882132 2882234 -21830845 - L1 LINE L1 -1439 4707 4618 1901 149 17 3 chrY 2882234 2882530 -21830549 - AluSx SINE Alu -12 300 1 1675 256 130 19 chrY 2882530 2883117 -21829962 - L1 LINE L1 -1528 4618 3941 1160 133 23 0 chrY 2883156 2883329 -21829750 - FRAM SINE Alu -4 172 1 21 0 0 0 chrY 2884126 2884147 -21828932 + AT_rich Low_complexity Low_complexity 1 21 0 2399 76 3 0 chrY 2884969 2885273 -21827806 - AluSp SINE Alu -8 305 1 3056 98 77 8 chrY 2885436 2885914 -21827165 - MER9 LTR ERVK 0 511 1 195 162 0 0 chrY 2886168 2886205 -21826874 + A-rich Low_complexity Low_complexity 1 37 0 213 139 0 0 chrY 2886232 2886275 -21826804 + (TAAAA)n Simple_repeat Simple_repeat 2 44 0 396 191 0 135 chrY 2886595 2886721 -21826358 + MIR SINE MIR 124 232 -30 1990 112 3 0 chrY 2886905 2887199 -21825880 - L1PA8 LINE L1 0 6172 5878 2061 148 119 10 chrY 2887487 2887873 -21825206 + MSTA LTR MaLR 1 428 0 1084 95 114 0 chrY 2888122 2888280 -21824799 - AluJb SINE Alu -4 308 133 23 0 0 0 chrY 2888925 2888948 -21824131 + AT_rich Low_complexity Low_complexity 1 23 0 1842 163 0 25 chrY 2890640 2890960 -21822119 - AluJb SINE Alu 0 312 1 225 132 0 0 chrY 2891618 2891656 -21821423 + (A)n Simple_repeat Simple_repeat 1 38 0 2450 55 6 10 chrY 2893105 2893417 -21819662 + AluY SINE Alu 1 311 0 1658 168 59 22 chrY 2893514 2893871 -21819208 + L1MC3 LINE L1 7396 7765 -20 1934 136 0 7 chrY 2893894 2894215 -21818864 - AluSq SINE Alu 0 319 1 1885 231 49 49 chrY 2895083 2895504 -21817575 - L1M4 LINE L1 -1815 5142 4722 291 28 0 0 chrY 2895504 2895540 -21817539 + (TG)n Simple_repeat Simple_repeat 2 37 0 1885 231 49 49 chrY 2895540 2895559 -21817520 - L1M4 LINE L1 -2235 4722 4704 2168 101 3 10 chrY 2895559 2895857 -21817222 + AluSq SINE Alu 1 296 -17 1885 231 49 49 chrY 2895857 2896008 -21817071 - L1M4 LINE L1 -2252 4705 4550 * 5138 130 5 0 chrY 2896000 2896779 -21816300 - L1PA15 LINE L1 -2 6814 6032 9321 211 13 9 chrY 2896784 2898477 -21814602 - L1PA15 LINE L1 -869 5928 4217 4680 77 24 24 chrY 2898477 2899137 -21813942 - PABL_A LTR ERV1 0 660 1 9321 211 13 9 chrY 2899137 2900009 -21813070 - L1PA15 LINE L1 -2580 4217 3350 286 24 0 0 chrY 2900014 2900055 -21813024 + L1MA3 LINE L1 6265 6305 0 1104 176 0 134 chrY 2900063 2900235 -21812844 - L1PA15 LINE L1 -5026 1761 1660 2108 110 13 3 chrY 2900235 2900535 -21812544 - AluSg SINE Alu -6 304 2 1104 176 0 134 chrY 2900535 2900721 -21812358 - L1PA15 LINE L1 -5127 1660 1451 * 2771 250 9 28 chrY 2900713 2901392 -21811687 - L1PA15 LINE L1 -5920 867 202 195 125 0 0 chrY 2901397 2901437 -21811642 + (T)n Simple_repeat Simple_repeat 1 40 0 957 217 22 18 chrY 2901437 2901663 -21811416 - L1M4 LINE L1 -2401 4556 4330 1652 311 50 19 chrY 2901664 2902279 -21810800 - L1M4 LINE L1 -6215 644 11 195 359 28 21 chrY 2902383 2902525 -21810554 - L2 LINE L2 -498 2816 2674 414 365 57 30 chrY 2902748 2903151 -21809928 - L2 LINE L2 -924 2390 1977 25 0 0 0 chrY 2903956 2903981 -21809098 + AT_rich Low_complexity Low_complexity 1 25 0 302 280 16 48 chrY 2904313 2904438 -21808641 - MIR3 SINE MIR -1 207 87 1190 201 43 114 chrY 2905009 2905403 -21807676 - MLT1B LTR MaLR -24 366 1 7442 226 55 31 chrY 2905709 2906401 -21806678 + L1MB3 LINE L1 2676 3350 -2833 2013 103 15 0 chrY 2906401 2906523 -21806556 + AluSg SINE Alu 3 122 -188 351 0 0 0 chrY 2906523 2906562 -21806517 + (CA)n Simple_repeat Simple_repeat 2 40 0 2013 103 15 0 chrY 2906562 2906710 -21806369 + AluSg SINE Alu 122 277 -33 7442 226 55 31 chrY 2906710 2909446 -21803633 + L1MB3 LINE L1 3350 6183 0 1809 114 78 0 chrY 2910173 2910444 -21802635 - AluSq SINE Alu -15 298 7 183 269 0 77 chrY 2912829 2912907 -21800172 - L3 LINE CR1 -1328 249 178 * 345 276 219 10 chrY 2912906 2913102 -21799977 - MIR SINE MIR -6 256 20 3484 149 51 39 chrY 2913277 2914372 -21798707 - Tigger3b DNA MER2_type 0 1232 1 1619 203 3 0 chrY 2915148 2915443 -21797636 - AluJb SINE Alu -16 296 1 243 285 89 49 chrY 2915691 2915814 -21797265 - L2 LINE L2 -9 3263 3136 21 57 0 0 chrY 2915814 2915849 -21797230 + AT_rich Low_complexity Low_complexity 1 35 0 510 331 73 8 chrY 2917301 2917546 -21795533 + MIR SINE MIR 2 262 0 204 182 0 0 chrY 2917548 2917592 -21795487 + (TAG)n Simple_repeat Simple_repeat 1 44 0 21 0 0 0 chrY 2918918 2918939 -21794140 + AT_rich Low_complexity Low_complexity 1 21 0 828 152 8 0 chrY 2919134 2919259 -21793820 - FLAM_C SINE Alu -17 126 1 360 271 45 45 chrY 2919259 2919392 -21793687 + MIR SINE MIR 116 248 -14 24 32 0 0 chrY 2919418 2919449 -21793630 + AT_rich Low_complexity Low_complexity 1 31 0 312 27 0 0 chrY 2919994 2920031 -21793048 + (TC)n Simple_repeat Simple_repeat 2 38 0 5154 141 25 20 chrY 2920254 2920783 -21792296 - MER49 LTR ERV1 -2 921 383 2574 39 0 10 chrY 2920783 2921089 -21791990 - AluY SINE Alu -8 303 1 5154 141 25 20 chrY 2921089 2921475 -21791604 - MER49 LTR ERV1 -540 383 1 235 304 69 0 chrY 2921941 2922043 -21791036 - MIR SINE MIR -52 210 102 21 0 0 0 chrY 2923143 2923164 -21789915 + AT_rich Low_complexity Low_complexity 1 21 0 832 20 0 0 chrY 2923164 2923262 -21789817 - L1PA3 LINE L1 -3 6152 6055 2668 142 50 0 chrY 2924274 2924712 -21788367 - L1PA15 LINE L1 -13 6152 5693 640 166 106 46 chrY 2925609 2925760 -21787319 - MLT1G LTR MaLR -13 554 395 761 199 79 168 chrY 2925806 2926134 -21786945 - MLT1G LTR MaLR -295 300 3 198 0 0 0 chrY 2926211 2926233 -21786846 + (TA)n Simple_repeat Simple_repeat 1 22 0 * 384 22 0 0 chrY 2926232 2926277 -21786802 + (GA)n Simple_repeat Simple_repeat 2 46 0 758 329 19 25 chrY 2927593 2927912 -21785167 + L1ME2 LINE L1 35 351 -6045 * 3381 257 36 14 chrY 2927909 2928999 -21784080 + L1ME2 LINE L1 3056 4169 -2046 4814 117 8 1 chrY 2928999 2929741 -21783338 + L1MA3 LINE L1 5559 6305 0 2702 246 52 31 chrY 2929757 2930709 -21782370 + L1ME2 LINE L1 5260 6232 -1 670 191 6 6 chrY 2930866 2931023 -21782056 + CT-rich Low_complexity Low_complexity 3 159 0 217 240 0 40 chrY 2931998 2932048 -21781031 + (CGTG)n Simple_repeat Simple_repeat 4 51 0 339 25 0 0 chrY 2932341 2932381 -21780698 + (CAG)n Simple_repeat Simple_repeat 1 40 0 523 282 23 0 chrY 2932384 2932515 -21780564 + MER5A DNA MER1_type 50 183 -6 389 353 5 33 chrY 2932711 2932895 -21780184 + MIR SINE MIR 41 219 -43 4173 161 23 1 chrY 2933591 2934317 -21778762 + Tigger2 DNA MER2_type 3 744 -1974 1605 134 16 0 chrY 2934384 2934637 -21778442 + Tigger2 DNA MER2_type 2462 2718 0 23 0 0 0 chrY 2936144 2936167 -21776912 + AT_rich Low_complexity Low_complexity 1 23 0 300 281 149 16 chrY 2937052 2937173 -21775906 - L2 LINE L2 -2 3270 3134 2053 220 0 0 chrY 2938517 2938986 -21774093 + L1 LINE L1 4652 5120 -1026 2720 128 31 0 chrY 2938987 2939402 -21773677 - MSTA LTR MaLR 0 428 1 7912 192 46 3 chrY 2939402 2940981 -21772098 - MSTA-int LTR MaLR 0 1651 6 2614 142 31 0 chrY 2940994 2941409 -21771670 - MSTA LTR MaLR 0 428 1 5117 156 14 19 chrY 2941413 2942464 -21770615 + L1PA16 LINE L1 5120 6165 -1 23 33 0 0 chrY 2943869 2943899 -21769180 + AT_rich Low_complexity Low_complexity 1 30 0 185 370 41 0 chrY 2943974 2944047 -21769032 - MIR SINE MIR -114 94 19 28 0 0 0 chrY 2946717 2946745 -21766334 + AT_rich Low_complexity Low_complexity 1 28 0 241 260 13 26 chrY 2947924 2948001 -21765078 - MIR SINE MIR -183 79 4 2027 122 3 3 chrY 2948094 2948410 -21764669 - AluSq SINE Alu 0 316 1 729 252 35 53 chrY 2948978 2949199 -21763880 + L2 LINE L2 2633 2849 -465 2082 146 5 45 chrY 2949199 2949577 -21763502 + MER47A DNA MER2_type 4 366 0 729 252 35 53 chrY 2949577 2949637 -21763442 + L2 LINE L2 2849 2909 -405 2909 164 45 7 chrY 2949645 2950361 -21762718 - L1PBa LINE L1 -4921 1942 1 407 335 73 28 chrY 2951762 2951941 -21761138 - MIR3 SINE MIR -7 201 15 343 250 56 19 chrY 2952198 2952306 -21760773 - MARNA DNA Mariner -355 231 120 1964 178 19 3 chrY 2954398 2954757 -21758322 + MLT1A1 LTR MaLR 1 365 0 313 277 119 64 chrY 2955058 2955260 -21757819 - L2 LINE L2 -903 2411 2199 206 224 20 0 chrY 2955295 2955344 -21757735 - L2 LINE L2 0 3313 3264 211 233 33 17 chrY 2957695 2957755 -21755324 - L2 LINE L2 -3 3310 3250 187 316 74 51 chrY 2958207 2958422 -21754657 + L2 LINE L2 1587 1806 -1508 5810 220 34 27 chrY 2958640 2961153 -21751926 - L1MB3 LINE L1 -9 6568 4027 6115 126 27 35 chrY 2961153 2961747 -21751332 - Tigger3b DNA MER2_type -1798 1230 646 759 162 75 64 chrY 2961747 2961920 -21751159 + FAM SINE Alu 1 175 0 6115 126 27 35 chrY 2961920 2962391 -21750688 - Tigger3b DNA MER2_type -2382 646 173 738 168 0 0 chrY 2962426 2962545 -21750534 - FLAM_C SINE Alu -24 119 1 518 158 37 0 chrY 2962545 2962627 -21750452 - Tigger3b DNA MER2_type -1050 181 97 19838 146 12 89 chrY 2962630 2966971 -21746108 - L1P LINE L1 -2140 4006 2 1950 248 43 63 chrY 2966965 2967463 -21745616 - L1MB3 LINE L1 -3053 3487 3010 * 2373 91 3 0 chrY 2967463 2967770 -21745309 - AluSg SINE Alu -2 308 1 1950 248 43 63 chrY 2967770 2968278 -21744801 - L1MB3 LINE L1 -3530 3010 2494 531 277 87 31 chrY 2968585 2968780 -21744299 - L2 LINE L2 -5 3308 3103 25 75 0 0 chrY 2968970 2969023 -21744056 + AT_rich Low_complexity Low_complexity 1 53 0 205 250 0 0 chrY 2969577 2969629 -21743450 + (CAG)n Simple_repeat Simple_repeat 1 52 0 2844 177 23 8 chrY 2970060 2970591 -21742488 - MER34 LTR ERV1 -3 539 1 24 0 0 0 chrY 2971087 2971111 -21741968 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chrY 2972076 2972097 -21740982 + AT_rich Low_complexity Low_complexity 1 21 0 636 50 0 0 chrY 2972146 2972226 -21740853 + (TA)n Simple_repeat Simple_repeat 2 81 0 2290 87 0 10 chrY 2972226 2972525 -21740554 - AluY SINE Alu -15 296 1 2318 94 0 0 chrY 2972661 2972970 -21740109 - AluSg1 SINE Alu 0 309 1 180 0 0 0 chrY 2973788 2973808 -21739271 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 27 0 0 0 chrY 2974921 2974948 -21738131 + AT_rich Low_complexity Low_complexity 1 27 0 2112 165 8 14 chrY 2975586 2975943 -21737136 - MLT1A1 LTR MaLR 0 365 11 5287 187 164 47 chrY 2976038 2977539 -21735540 + MER52A LTR ERV1 1 1755 0 206 136 23 0 chrY 2977954 2977998 -21735081 + (TG)n Simple_repeat Simple_repeat 1 45 0 442 283 128 21 chrY 2979069 2979256 -21733823 + L3 LINE CR1 1133 1339 -238 327 25 0 0 chrY 2979999 2980039 -21733040 + (CA)n Simple_repeat Simple_repeat 1 40 0 2341 103 0 0 chrY 2980240 2980550 -21732529 + AluSg SINE Alu 1 310 0 1122 215 4 21 chrY 2981803 2982045 -21731034 + MER58B DNA MER1_type 103 340 -1 7102 54 9 0 chrY 2982122 2983096 -21729983 - L1PA7 LINE L1 0 6154 5176 5131 82 10 1 chrY 2983189 2983874 -21729205 - LTR8 LTR ERV1 0 691 1 1589 164 52 4 chrY 2984348 2984650 -21728429 + AluJb SINE Alu 1 315 0 769 294 44 63 chrY 2985225 2985654 -21727425 - MLT1G LTR MaLR 0 590 170 21 36 0 0 chrY 2985860 2985888 -21727191 + AT_rich Low_complexity Low_complexity 1 28 0 29 70 0 0 chrY 2987053 2987110 -21725969 + AT_rich Low_complexity Low_complexity 1 57 0 273 29 0 0 chrY 2989159 2989193 -21723886 + (TG)n Simple_repeat Simple_repeat 2 35 0 21 0 0 0 chrY 2989829 2989850 -21723229 + AT_rich Low_complexity Low_complexity 1 21 0 22 80 0 0 chrY 2991052 2991102 -21721977 + AT_rich Low_complexity Low_complexity 1 50 0 26 50 0 0 chrY 2992356 2992396 -21720683 + AT_rich Low_complexity Low_complexity 1 40 0 22 35 0 0 chrY 2993563 2993592 -21719487 + AT_rich Low_complexity Low_complexity 1 29 0 391 256 58 29 chrY 2994237 2994382 -21718697 + MIR3 SINE MIR 55 188 -27 307 278 0 0 chrY 2994428 2994500 -21718579 - MIR3 SINE MIR -17 191 120 2122 109 10 13 chrY 2995342 2995646 -21717433 + AluSx SINE Alu 1 303 -9 472 60 24 119 chrY 2996252 2996336 -21716743 - AluSg/x SINE Alu -20 290 215 587 295 36 6 chrY 2997458 2997624 -21715455 + MIR SINE MIR 34 204 -58 2373 67 0 3 chrY 2997669 2997967 -21715112 + AluY SINE Alu 1 297 -14 355 226 32 32 chrY 2998048 2998141 -21714938 - MER5A DNA MER1_type -88 101 9 2279 60 0 11 chrY 2998494 2998806 -21714273 - AluY SINE Alu 0 309 1 3474 184 26 4 chrY 3000898 3001601 -21711478 + L1P LINE L1 4492 5209 -937 291 28 0 0 chrY 3002093 3002129 -21710950 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 330 316 33 13 chrY 3003841 3003993 -21709086 + MIR SINE MIR 84 238 -24 2554 47 0 0 chrY 3004582 3004881 -21708198 + AluY SINE Alu 1 299 -12 461 267 87 65 chrY 3004928 3005266 -21707813 - L1MC4a LINE L1 -171 5950 5603 1990 118 13 25 chrY 3005405 3005719 -21707360 + AluSq SINE Alu 1 310 -3 353 303 106 24 chrY 3005855 3006152 -21706927 - L1ME3A LINE L1 -245 5925 5605 348 279 118 38 chrY 3006164 3006487 -21706592 - L1ME3A LINE L1 -748 5398 5189 350 333 12 0 chrY 3006504 3006622 -21706457 - L1MC4a LINE L1 -532 5589 5483 2232 103 3 0 chrY 3006638 3006939 -21706140 - AluSg SINE Alu -3 307 6 2328 86 0 13 chrY 3007331 3007646 -21705433 - AluY SINE Alu 0 311 1 24 0 0 0 chrY 3009455 3009479 -21703600 + AT_rich Low_complexity Low_complexity 1 24 0 3299 70 13 15 chrY 3010038 3010496 -21702583 - L1PA8 LINE L1 -13 6159 5703 480 214 0 22 chrY 3010646 3010828 -21702251 + GA-rich Low_complexity Low_complexity 3 180 0 225 0 0 0 chrY 3011418 3011443 -21701636 + (TG)n Simple_repeat Simple_repeat 2 26 0 982 75 14 0 chrY 3011692 3011839 -21701240 - L1PBa LINE L1 -6692 171 23 432 159 11 119 chrY 3011854 3012030 -21701049 - L1MCa LINE L1 -5226 1200 1044 3872 184 17 17 chrY 3012220 3012942 -21700137 - MER72 LTR ERV1 0 722 1 350 320 40 0 chrY 3013073 3013198 -21699881 - MIR SINE MIR -72 190 61 22 106 0 0 chrY 3014500 3014585 -21698494 + AT_rich Low_complexity Low_complexity 1 85 0 186 143 0 0 chrY 3014688 3014723 -21698356 + (TG)n Simple_repeat Simple_repeat 2 36 0 2116 105 29 9 chrY 3014761 3015104 -21697975 + L1MA1 LINE L1 5953 6302 0 749 215 6 0 chrY 3015211 3015388 -21697691 + L1MA4 LINE L1 6121 6298 -2 198 171 0 0 chrY 3016428 3016469 -21696610 + T-rich Low_complexity Low_complexity 1 41 0 225 222 28 0 chrY 3017156 3017228 -21695851 - L1MDa LINE L1 -2930 3610 3537 839 210 6 12 chrY 3017228 3017390 -21695689 - FRAM SINE Alu -19 157 1 473 236 149 8 chrY 3017393 3017634 -21695445 - L1MDa LINE L1 -3007 3533 3259 * 803 215 37 12 chrY 3017627 3017873 -21695206 - L1MDa LINE L1 -3623 2917 2666 225 108 0 0 chrY 3017885 3017922 -21695157 + (T)n Simple_repeat Simple_repeat 1 37 0 704 213 8 0 chrY 3017925 3018052 -21695027 - FLAM_A SINE Alu -5 128 1 1502 245 80 95 chrY 3018151 3018305 -21694774 - L1MDa LINE L1 -3936 2604 2449 2387 73 3 0 chrY 3018305 3018606 -21694473 - AluY SINE Alu -9 302 1 1502 245 80 95 chrY 3018606 3019703 -21693376 - L1MDa LINE L1 -4091 2449 1372 705 120 128 0 chrY 3019747 3019872 -21693207 - L1PA15 LINE L1 -2 6163 6023 3343 166 92 6 chrY 3019872 3020524 -21692555 - L1PA8A LINE L1 -170 5961 5254 233 213 40 0 chrY 3020531 3020606 -21692473 - L1MDa LINE L1 -5185 1355 1278 192 77 0 0 chrY 3020690 3020716 -21692363 + (T)n Simple_repeat Simple_repeat 1 26 0 5858 153 18 14 chrY 3020719 3021372 -21691707 - L1PB1 LINE L1 -3 6148 5499 199 70 23 23 chrY 3021372 3021415 -21691664 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2271 70 0 7 chrY 3021415 3021701 -21691378 - AluY SINE Alu -27 284 1 5858 153 18 14 chrY 3021701 3022708 -21690371 - L1PB1 LINE L1 -651 5500 4472 255 281 23 31 chrY 3023267 3023395 -21689684 - L1MDa LINE L1 -5882 648 522 559 302 132 5 chrY 3023442 3023654 -21689425 - LTR50 LTR ERVL -271 524 286 2332 290 43 44 chrY 3023695 3024633 -21688446 - L2 LINE L2 -569 2745 1809 257 400 17 0 chrY 3025353 3025468 -21687611 - MIR3 SINE MIR -31 177 61 293 274 0 14 chrY 3025558 3025631 -21687448 + CT-rich Low_complexity Low_complexity 2 73 0 305 377 7 7 chrY 3026010 3026148 -21686931 + MIR SINE MIR 40 177 -85 657 0 0 0 chrY 3027163 3027236 -21685843 + (TTTC)n Simple_repeat Simple_repeat 4 76 0 21 36 0 0 chrY 3030951 3030979 -21682100 + AT_rich Low_complexity Low_complexity 1 28 0 28 48 0 0 chrY 3031472 3031514 -21681565 + AT_rich Low_complexity Low_complexity 1 42 0 214 213 16 16 chrY 3032313 3032374 -21680705 + MIR SINE MIR 165 225 -37 378 74 0 0 chrY 3032721 3032775 -21680304 + (TCTA)n Simple_repeat Simple_repeat 1 54 0 655 212 0 15 chrY 3033152 3033284 -21679795 - FRAM SINE Alu -15 161 32 880 118 0 8 chrY 3033322 3033449 -21679630 - THE1B LTR MaLR 0 364 239 3367 174 77 7 chrY 3033449 3034602 -21678477 + L1PA12 LINE L1 2393 3631 -3953 5714 123 14 3 chrY 3034602 3035591 -21677488 + L1PA14 LINE L1 5161 6161 0 1111 86 0 25 chrY 3035593 3035755 -21677324 + L1MA2 LINE L1 6143 6300 -4 1060 228 58 85 chrY 3037013 3037546 -21675533 + MER39 LTR ERV1 1 682 -25 265 261 15 0 chrY 3038313 3038378 -21674701 + CT-rich Low_complexity Low_complexity 2 67 0 7981 189 13 66 chrY 3038776 3039013 -21674066 - L1PA16 LINE L1 -4 6162 5914 2132 117 51 17 chrY 3039013 3039365 -21673714 + THE1B LTR MaLR 1 364 0 11001 107 13 5 chrY 3039365 3040933 -21672146 + THE1B-int LTR MaLR 1 1580 0 1869 151 98 21 chrY 3040933 3041271 -21671808 + THE1B LTR MaLR 1 364 0 7981 189 13 66 chrY 3041271 3044042 -21669037 - L1PA16 LINE L1 -249 5917 3319 234 328 132 35 chrY 3044183 3044494 -21668585 + L3b LINE CR1 1129 1469 -114 2203 130 14 27 chrY 3044961 3045330 -21667749 + THE1B LTR MaLR 1 364 0 10749 117 12 0 chrY 3045330 3046891 -21666188 + THE1B-int LTR MaLR 1 1580 0 2123 149 5 35 chrY 3046891 3047266 -21665813 + THE1B LTR MaLR 1 364 0 2854 16 0 0 chrY 3047955 3048272 -21664807 + AluYb8 SINE Alu 1 317 -1 282 263 50 10 chrY 3048483 3048582 -21664497 - MIR SINE MIR -117 145 43 439 275 215 25 chrY 3048663 3048863 -21664216 + MIR SINE MIR 2 239 -23 219 281 99 25 chrY 3050312 3050433 -21662646 - MER5B DNA MER1_type -48 130 1 189 0 0 0 chrY 3051398 3051419 -21661660 + (TG)n Simple_repeat Simple_repeat 2 22 0 * 284 0 28 0 chrY 3051418 3051454 -21661625 + (TA)n Simple_repeat Simple_repeat 1 37 0 2213 92 0 3 chrY 3051455 3051747 -21661332 - AluSc SINE Alu -17 292 2 26 0 0 0 chrY 3051750 3051776 -21661303 + AT_rich Low_complexity Low_complexity 1 26 0 27 0 0 0 chrY 3052597 3052624 -21660455 + AT_rich Low_complexity Low_complexity 1 27 0 367 189 26 7 chrY 3053119 3053272 -21659807 + (TA)n Simple_repeat Simple_repeat 1 156 0 227 316 41 20 chrY 3053289 3053387 -21659692 + L2 LINE L2 3170 3269 -3 806 181 13 13 chrY 3054373 3054528 -21658551 - FRAM SINE Alu -16 160 6 21 0 0 0 chrY 3055477 3055498 -21657581 + AT_rich Low_complexity Low_complexity 1 21 0 33 25 0 0 chrY 3055984 3056024 -21657055 + AT_rich Low_complexity Low_complexity 1 40 0 28 71 0 0 chrY 3056550 3056606 -21656473 + AT_rich Low_complexity Low_complexity 1 56 0 4848 161 9 9 chrY 3057181 3058073 -21655006 - L1MA3 LINE L1 0 7724 6833 2128 199 37 25 chrY 3058076 3058563 -21654516 + L1 LINE L1 3964 4456 -1690 4856 167 23 3 chrY 3059971 3060889 -21652190 + L1 LINE L1 4441 5376 -770 391 309 36 30 chrY 3062453 3062618 -21650461 + MIR3 SINE MIR 43 208 0 2556 126 3 0 chrY 3063197 3063569 -21649510 + THE1C LTR MaLR 3 375 0 636 204 84 14 chrY 3063975 3064117 -21648962 + FRAM SINE Alu 10 161 -15 23 33 0 0 chrY 3064963 3064993 -21648086 + AT_rich Low_complexity Low_complexity 1 30 0 14934 184 23 35 chrY 3068352 3070061 -21643018 - L1MA3 LINE L1 -996 6569 4841 5845 113 17 35 chrY 3070061 3072054 -21641025 - L1PA13 LINE L1 0 6814 4836 14934 184 23 35 chrY 3072054 3074602 -21638477 - L1MA3 LINE L1 -2724 4841 2399 2334 130 17 8 chrY 3074602 3074963 -21638116 + THE1B LTR MaLR 1 364 0 14934 184 23 35 chrY 3074963 3076415 -21636664 - L1MA3 LINE L1 -5166 2399 931 12273 214 28 10 chrY 3076414 3076535 -21636544 - L1PA13 LINE L1 -2793 4004 3887 * 1628 159 49 85 chrY 3076535 3076924 -21636155 + THE1C LTR MaLR 1 375 0 12273 214 28 10 chrY 3076924 3079926 -21633153 - L1PA13 LINE L1 -2910 3887 773 259 44 44 0 chrY 3079926 3079971 -21633108 + (CA)n Simple_repeat Simple_repeat 1 47 0 12273 214 28 10 chrY 3079971 3080759 -21632320 - L1PA13 LINE L1 -6024 773 1 189 313 30 0 chrY 3080768 3080835 -21632244 + MIR SINE MIR 98 166 -96 23 54 0 0 chrY 3082360 3082397 -21630682 + AT_rich Low_complexity Low_complexity 1 37 0 1245 117 3 9 chrY 3082535 3082733 -21630346 + L1P5 LINE L1 5595 5791 -360 250 201 24 0 chrY 3082738 3082835 -21630244 + L1MC4 LINE L1 1995 6983 -1339 236 152 121 0 chrY 3082834 3082900 -21630179 + L1MC4 LINE L1 6920 6993 -1329 * 1238 141 0 0 chrY 3082891 3083083 -21629996 - L1P5 LINE L1 -523 5628 5437 2523 80 0 0 chrY 3083088 3083415 -21629664 + L1PB1 LINE L1 5782 6108 -43 23 0 0 0 chrY 3084843 3084866 -21628213 + AT_rich Low_complexity Low_complexity 1 23 0 1624 123 0 0 chrY 3085608 3085836 -21627243 - AluSg/x SINE Alu -4 308 81 208 267 33 0 chrY 3086142 3086202 -21626877 - L2 LINE L2 -4 3268 3207 822 152 30 0 chrY 3086534 3086666 -21626413 - FRAM SINE Alu -39 137 2 532 273 0 0 chrY 3086867 3086988 -21626091 + L2 LINE L2 3189 3309 -4 25 0 0 0 chrY 3087131 3087156 -21625923 + AT_rich Low_complexity Low_complexity 1 25 0 303 169 0 0 chrY 3088322 3088393 -21624686 + (TA)n Simple_repeat Simple_repeat 2 72 0 215 211 35 0 chrY 3088495 3088552 -21624527 + (TAA)n Simple_repeat Simple_repeat 3 61 0 1125 56 19 6 chrY 3089282 3089444 -21623635 + (GAAA)n Simple_repeat Simple_repeat 3 166 0 183 80 0 0 chrY 3089446 3089471 -21623608 + (CAAG)n Simple_repeat Simple_repeat 2 26 0 2071 211 15 19 chrY 3090079 3090432 -21622647 - L1MA9 LINE L1 -38 6274 5922 260 312 38 19 chrY 3090432 3090589 -21622490 - L1ME3A LINE L1 -244 5926 5767 31 0 0 0 chrY 3091613 3091644 -21621435 + AT_rich Low_complexity Low_complexity 1 31 0 42805 30 21 1 chrY 3091644 3097675 -21615404 - L1HS LINE L1 0 6155 1 686 127 59 0 chrY 3097970 3098088 -21614991 + L1MB1 LINE L1 6042 6166 -2 2191 107 3 3 chrY 3098343 3098641 -21614438 - AluSx SINE Alu -14 298 1 254 321 22 35 chrY 3099641 3099754 -21613325 - MIR SINE MIR -74 134 20 261 285 83 56 chrY 3100203 3100302 -21612777 - L1MA10 LINE L1 -4 6330 6224 2289 124 8 8 chrY 3100302 3100657 -21612422 - THE1A LTR MaLR 0 355 1 261 285 83 56 chrY 3100657 3100701 -21612378 - L1MA10 LINE L1 -110 6224 6183 824 206 95 51 chrY 3101670 3102055 -21611024 - MER31B LTR ERV1 0 466 3 376 257 143 0 chrY 3102119 3102224 -21610855 + L2 LINE L2 3145 3264 -8 31 26 0 0 chrY 3103588 3103626 -21609453 + AT_rich Low_complexity Low_complexity 1 38 0 1525 204 0 26 chrY 3104194 3104540 -21608539 + AluJb SINE Alu 3 340 0 13564 161 31 6 chrY 3105222 3107541 -21605538 + L1PA11 LINE L1 2820 5230 -944 279 0 0 0 chrY 3107541 3107572 -21605507 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 13564 161 31 6 chrY 3107572 3108537 -21604542 + L1PA11 LINE L1 5230 6169 -5 8320 190 30 68 chrY 3108775 3112105 -21600974 - L1PA15 LINE L1 -13 6152 2928 2030 117 7 10 chrY 3112477 3112768 -21600311 - AluSx SINE Alu -20 292 3 394 176 0 0 chrY 3112775 3112849 -21600230 + Tigger7 DNA MER2_type 2457 2530 -57 1885 126 61 0 chrY 3112865 3113159 -21599920 - AluSq SINE Alu -1 312 1 23 78 0 0 chrY 3113265 3113316 -21599763 + AT_rich Low_complexity Low_complexity 1 51 0 23 54 0 0 chrY 3113432 3113469 -21599610 + AT_rich Low_complexity Low_complexity 1 37 0 796 284 66 8 chrY 3117416 3117659 -21595420 + MIR SINE MIR 2 258 -4 2546 191 111 15 chrY 3118381 3118974 -21594105 - L1MB8 LINE L1 -1 6177 5528 2126 93 0 3 chrY 3119100 3119389 -21593690 + AluSx SINE Alu 11 298 -14 2549 55 0 0 chrY 3119408 3119718 -21593361 + AluY SINE Alu 1 310 -1 306 0 0 0 chrY 3120262 3120296 -21592783 + (TG)n Simple_repeat Simple_repeat 1 34 0 2241 74 0 3 chrY 3123397 3123704 -21589375 - AluY SINE Alu 0 334 29 365 275 150 31 chrY 3123712 3123872 -21589207 + MIR SINE MIR 53 231 -31 240 301 41 0 chrY 3123867 3123940 -21589139 - MIR SINE MIR -127 135 60 * 13304 137 22 62 chrY 3124819 3127337 -21585742 - Tigger1 DNA MER2_type -1 2417 1 248 305 75 70 chrY 3127348 3127561 -21585518 - MIR SINE MIR -15 247 34 22 0 0 0 chrY 3128005 3128027 -21585052 + AT_rich Low_complexity Low_complexity 1 22 0 186 344 75 25 chrY 3128364 3128524 -21584555 - L3b LINE CR1 -105 1478 1311 2270 109 0 0 chrY 3130029 3130332 -21582747 + AluSq SINE Alu 3 305 -8 6734 125 6 1 chrY 3131039 3132120 -21580959 + L1MA1 LINE L1 5216 6301 -1 2253 97 3 7 chrY 3132973 3133283 -21579796 - AluSp SINE Alu -4 309 1 2015 153 22 27 chrY 3137404 3137770 -21575309 - THE1B LTR MaLR 0 364 1 456 337 55 10 chrY 3138058 3138260 -21574819 - L2 LINE L2 -252 3061 2851 185 304 0 0 chrY 3138340 3138396 -21574683 - L2 LINE L2 -152 3161 3106 8618 76 2 28 chrY 3138396 3139636 -21573443 + L1P LINE L1 830 2036 -4110 4428 133 21 0 chrY 3139636 3140344 -21572735 + L1PA13 LINE L1 5422 6144 -19 2129 169 5 36 chrY 3140721 3141140 -21571939 - L1PA13 LINE L1 -4641 2146 1741 1072 166 0 24 chrY 3141139 3141350 -21571729 - L1M1 LINE L1 -632 7092 6887 * 1419 149 5 0 chrY 3141352 3141573 -21571506 - AluJb SINE Alu -6 306 85 1235 206 5 12 chrY 3141573 3142003 -21571076 - L1M1 LINE L1 -745 6820 6472 2244 181 17 15 chrY 3142004 3142475 -21570604 + L1 LINE L1 4430 4901 -1245 1076 181 5 9 chrY 3142474 3142689 -21570390 - L1M1 LINE L1 -1777 5788 5575 * 3978 188 35 6 chrY 3142701 3146334 -21566745 - L1M1 LINE L1 -3641 3924 11 1631 96 32 0 chrY 3146439 3146659 -21566420 + AluSg/x SINE Alu 71 297 -13 21 0 0 0 chrY 3146772 3146793 -21566286 + AT_rich Low_complexity Low_complexity 1 21 0 1092 113 12 0 chrY 3148315 3148475 -21564604 + AluSg/x SINE Alu 130 291 -19 1975 138 3 0 chrY 3150072 3150377 -21562702 - AluSx SINE Alu -6 306 1 333 363 32 8 chrY 3150817 3150941 -21562138 - MIR3 SINE MIR -30 178 52 237 222 0 0 chrY 3152178 3152241 -21560838 + CT-rich Low_complexity Low_complexity 2 64 0 904 182 0 0 chrY 3152412 3152582 -21560497 - AluSg/x SINE Alu 0 312 143 180 0 0 0 chrY 3152584 3152604 -21560475 + (TA)n Simple_repeat Simple_repeat 1 20 0 1646 177 13 3 chrY 3152870 3153170 -21559909 - AluJb SINE Alu -9 303 1 29 28 0 0 chrY 3153534 3153570 -21559509 + AT_rich Low_complexity Low_complexity 1 36 0 219 175 25 0 chrY 3153883 3153923 -21559156 + (CATATA)n Simple_repeat Simple_repeat 5 45 0 2447 159 20 0 chrY 3154513 3154954 -21558125 - L1MA5 LINE L1 -6 6294 5845 10473 175 30 7 chrY 3155140 3157689 -21555390 - L1MA2 LINE L1 0 7723 5076 180 0 0 0 chrY 3157689 3157709 -21555370 + (TG)n Simple_repeat Simple_repeat 2 21 0 10473 175 30 7 chrY 3157709 3158448 -21554631 - L1MA2 LINE L1 -2647 5076 4356 233 182 0 0 chrY 3158447 3158491 -21554588 - L1MA2 LINE L1 -7508 57 14 * 34 24 0 0 chrY 3159056 3159097 -21553982 + AT_rich Low_complexity Low_complexity 1 41 0 25 31 0 0 chrY 3159279 3159311 -21553768 + AT_rich Low_complexity Low_complexity 1 32 0 347 324 9 9 chrY 3159799 3159907 -21553172 - MIR3 SINE MIR -16 192 85 2177 159 22 3 chrY 3160506 3160871 -21552208 - THE1C LTR MaLR 0 375 4 8749 146 34 46 chrY 3160874 3162473 -21550606 - THE1C-int LTR MaLR 0 1580 1 2151 163 22 3 chrY 3162473 3162841 -21550238 - THE1C LTR MaLR 0 375 1 21 36 0 0 chrY 3163628 3163656 -21549423 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chrY 3163676 3163699 -21549380 + AT_rich Low_complexity Low_complexity 1 23 0 12509 201 84 5 chrY 3164030 3164116 -21548963 + L1MA2 LINE L1 11 89 -7476 180 0 0 0 chrY 3164116 3164136 -21548943 + (CA)n Simple_repeat Simple_repeat 2 21 0 12509 201 84 5 chrY 3164136 3166608 -21546471 + L1MA2 LINE L1 89 2772 -4793 2524 179 5 0 chrY 3166608 3167016 -21546063 - MSTA LTR MaLR 0 428 19 785 157 0 8 chrY 3167025 3167159 -21545920 - MSTA-int LTR MaLR 0 1651 1519 * 3275 164 2 2 chrY 3167156 3167712 -21545367 - MSTA-int LTR MaLR -1088 563 8 351 0 0 0 chrY 3167715 3167754 -21545325 + (T)n Simple_repeat Simple_repeat 1 39 0 2213 188 5 5 chrY 3167756 3168154 -21544925 - MSTA LTR MaLR -30 398 1 2484 132 20 0 chrY 3168154 3168563 -21544516 + L1MA2 LINE L1 2768 3184 -4381 6194 168 10 10 chrY 3168565 3170610 -21542469 + L1MA2 LINE L1 5677 7723 0 22 35 0 0 chrY 3170919 3170948 -21542131 + AT_rich Low_complexity Low_complexity 1 29 0 5094 133 6 4 chrY 3171614 3172424 -21540655 - L1P LINE L1 -1322 4824 4013 1895 88 4 0 chrY 3172424 3172682 -21540397 + L1PA11 LINE L1 5912 6173 -1 2305 66 3 7 chrY 3172797 3173098 -21539981 + AluY SINE Alu 1 300 -11 21 0 0 0 chrY 3173749 3173770 -21539309 + AT_rich Low_complexity Low_complexity 1 21 0 395 262 49 71 chrY 3173800 3173983 -21539096 + MIR SINE MIR 13 191 -71 384 167 78 0 chrY 3174245 3174335 -21538744 - L1ME4a LINE L1 -237 5884 5788 2343 92 0 0 chrY 3174393 3174696 -21538383 + AluSg SINE Alu 1 303 -7 47 67 0 0 chrY 3176000 3176089 -21536990 + AT_rich Low_complexity Low_complexity 1 89 0 2038 127 0 0 chrY 3177259 3177564 -21535515 + AluSx SINE Alu 1 305 0 298 291 149 0 chrY 3177788 3177922 -21535157 + MIR3 SINE MIR 32 185 -23 42 86 0 0 chrY 3179998 3180103 -21532976 + AT_rich Low_complexity Low_complexity 1 105 0 297 0 0 0 chrY 3180552 3180585 -21532494 + (CA)n Simple_repeat Simple_repeat 2 34 0 3355 188 23 26 chrY 3180599 3181574 -21531505 - L1 LINE L1 -3663 3902 2934 12652 217 26 39 chrY 3181584 3182694 -21530385 - L1PA12 LINE L1 -2491 5093 3970 1707 71 0 0 chrY 3182694 3182918 -21530161 + L1PA7 LINE L1 5931 6154 0 12652 217 26 39 chrY 3182918 3185623 -21527456 - L1M4 LINE L1 -3614 3970 1 2341 268 47 30 chrY 3185623 3185828 -21527251 + L1M4 LINE L1 3971 4171 -3413 2090 144 33 25 chrY 3185828 3186189 -21526890 + THE1B LTR MaLR 1 364 0 10791 118 13 9 chrY 3186189 3187644 -21525435 + THE1B-int LTR MaLR 1 1464 -116 2206 105 0 3 chrY 3187644 3187940 -21525139 - AluSx SINE Alu -17 295 1 10791 118 13 9 chrY 3187940 3188058 -21525021 + THE1B-int LTR MaLR 1464 1580 0 1940 144 42 33 chrY 3188059 3188419 -21524660 + THE1B LTR MaLR 2 364 0 2341 268 47 30 chrY 3188419 3189311 -21523768 + L1M4 LINE L1 4170 5090 -2494 1472 136 9 0 chrY 3189311 3189532 -21523547 - AluSp SINE Alu 0 313 91 1661 176 84 6 chrY 3189533 3189856 -21523223 - MSTA LTR MaLR -80 348 1 2521 55 3 0 chrY 3189896 3190204 -21522875 - AluY SINE Alu -2 309 1 30 0 0 0 chrY 3192758 3192788 -21520291 + AT_rich Low_complexity Low_complexity 1 30 0 253 148 0 33 chrY 3192909 3192970 -21520109 + L1MC4 LINE L1 6640 6698 -1344 * 6313 132 26 39 chrY 3192969 3194189 -21518890 + L1M1 LINE L1 2263 3467 -4098 2929 178 77 27 chrY 3194189 3194882 -21518197 + LTR8A LTR ERV1 1 727 0 531 275 99 16 chrY 3194882 3195064 -21518015 + HUERS-P1 LTR ERV1 1 197 -6066 4129 179 96 62 chrY 3195215 3196360 -21516719 + HUERS-P1 LTR ERV1 3 1624 -4639 * 11078 152 39 36 chrY 3196357 3196984 -21516095 + HUERS-P1 LTR ERV1 768 1392 -4932 2090 112 0 0 chrY 3196984 3197271 -21515808 + AluY SINE Alu 1 287 -24 11078 152 39 36 chrY 3197271 3200318 -21512761 + HUERS-P1 LTR ERV1 1392 5790 -534 1119 169 63 82 chrY 3200340 3200659 -21512420 + HUERS-P1 LTR ERV1 5914 6226 -105 815 255 111 16 chrY 3200664 3200907 -21512172 + HUERS-P1 LTR ERV1 5994 6259 -4 268 143 0 0 chrY 3200909 3200958 -21512121 + LTR8A LTR ERV1 1 49 -678 8572 182 23 15 chrY 3200960 3203831 -21509248 + L1MA2 LINE L1 3359 6263 -41 2185 140 34 3 chrY 3203831 3204181 -21508898 + THE1B LTR MaLR 1 361 -3 9609 125 32 32 chrY 3204184 3205764 -21507315 + THE1B-int LTR MaLR 1 1580 0 1090 134 0 0 chrY 3205764 3205921 -21507158 + THE1B LTR MaLR 1 157 -207 1156 198 16 43 chrY 3205940 3206198 -21506881 + L1M3 LINE L1 5503 5753 -430 * 4547 252 50 49 chrY 3206193 3208533 -21504546 + L1MB7 LINE L1 119 2584 -4373 25 0 0 0 chrY 3208704 3208729 -21504350 + AT_rich Low_complexity Low_complexity 1 25 0 233 195 0 0 chrY 3208944 3208985 -21504094 + (CA)n Simple_repeat Simple_repeat 2 42 0 2178 258 72 7 chrY 3209027 3209877 -21503202 + L1MB7 LINE L1 2874 3741 -3216 * 3181 246 103 25 chrY 3209871 3210468 -21502611 + L1MB7 LINE L1 4844 5394 -1601 2205 82 28 3 chrY 3210468 3210759 -21502320 + AluSp SINE Alu 1 298 -15 3181 246 103 25 chrY 3210759 3212138 -21500941 + L1MB7 LINE L1 5394 6986 -9 22 0 0 0 chrY 3212616 3212638 -21500441 + AT_rich Low_complexity Low_complexity 1 22 0 2434 281 38 19 chrY 3213261 3214110 -21498969 - L1ME1 LINE L1 -19 6147 5283 11745 208 81 15 chrY 3214117 3218043 -21495036 - L1PA16 LINE L1 -3 6866 2346 225 0 0 0 chrY 3218043 3218068 -21495011 + (TG)n Simple_repeat Simple_repeat 2 26 0 11745 208 81 15 chrY 3218068 3220580 -21492499 - L1PA16 LINE L1 -4523 2346 2 2386 260 27 22 chrY 3220610 3221457 -21491622 - L1ME1 LINE L1 -886 5260 4410 714 268 70 8 chrY 3221458 3221701 -21491378 - L1ME1 LINE L1 -1932 4214 3957 868 270 58 6 chrY 3221708 3222053 -21491026 - L1ME1 LINE L1 -3489 2657 2295 24 0 0 0 chrY 3222703 3222727 -21490352 + AT_rich Low_complexity Low_complexity 1 24 0 26 0 0 0 chrY 3225251 3225277 -21487802 + AT_rich Low_complexity Low_complexity 1 26 0 339 85 0 0 chrY 3225601 3225648 -21487431 + (CA)n Simple_repeat Simple_repeat 2 48 0 220 190 0 63 chrY 3226946 3227025 -21486054 + T-rich Low_complexity Low_complexity 2 75 0 22 0 0 0 chrY 3227663 3227685 -21485394 + AT_rich Low_complexity Low_complexity 1 22 0 2241 173 32 28 chrY 3229074 3229541 -21483538 - L1MC3 LINE L1 -21 7764 7296 1827 198 25 3 chrY 3230036 3230394 -21482685 + MLT2D LTR ERVL 1 366 -48 498 183 15 26 chrY 3230394 3230671 -21482408 + CT-rich Low_complexity Low_complexity 1 274 0 253 343 56 14 chrY 3230836 3230979 -21482100 + MIR SINE MIR 2 150 -112 1594 240 22 3 chrY 3231248 3231606 -21481473 - MLT1A1 LTR MaLR 0 365 1 7267 239 37 11 chrY 3231607 3233297 -21479782 - MLT1A1-int LTR MaLR -1 1734 1 1683 209 44 3 chrY 3233304 3233648 -21479431 - MLT1A1 LTR MaLR -7 358 1 478 272 28 65 chrY 3233880 3234097 -21478982 - L2 LINE L2 -1 3312 3104 288 252 52 35 chrY 3234125 3234240 -21478839 - MLT1L LTR MaLR 0 615 499 432 294 156 9 chrY 3234325 3234536 -21478543 - MLT1L LTR MaLR -228 387 146 186 346 93 9 chrY 3234648 3234755 -21478324 - L2 LINE L2 -1234 2080 1965 1856 299 63 14 chrY 3234761 3235575 -21477504 + L2 LINE L2 1215 2113 -1201 3995 213 18 13 chrY 3235604 3235932 -21477147 - L1MB7 LINE L1 -21 6163 5838 9027 109 13 0 chrY 3235932 3237203 -21475876 - HSMAR1 DNA Mariner 0 1287 1 3995 213 18 13 chrY 3237203 3237359 -21475720 - L1MB7 LINE L1 -346 5838 5684 1514 208 3 13 chrY 3237359 3237685 -21475394 + AluJb SINE Alu 1 312 0 3995 213 18 13 chrY 3237685 3238249 -21474830 - L1MB7 LINE L1 -500 5684 5107 1307 220 70 55 chrY 3238251 3238698 -21474381 - L1MB7 LINE L1 -1447 4699 4241 288 53 0 0 chrY 3238698 3238736 -21474343 + (TG)n Simple_repeat Simple_repeat 2 39 0 1307 220 70 55 chrY 3238736 3238816 -21474263 - L1MB7 LINE L1 -1905 4241 4164 1631 185 20 57 chrY 3238832 3239237 -21473842 - MLT1B LTR MaLR 0 390 1 5237 233 19 39 chrY 3239237 3240082 -21472997 - L1M4c LINE L1 -1844 5113 4310 261 0 0 0 chrY 3240082 3240111 -21472968 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 5237 233 19 39 chrY 3240111 3240803 -21472276 - L1M4c LINE L1 -2647 4310 3606 4635 146 39 3 chrY 3240819 3241924 -21471155 + L1PA12 LINE L1 4903 6040 -128 2096 121 71 6 chrY 3241924 3242264 -21470815 + THE1B LTR MaLR 1 362 -2 6121 118 7 4 chrY 3242266 3243165 -21469914 + THE1B-int LTR MaLR 1 901 -679 930 191 48 48 chrY 3243167 3243377 -21469702 + THE1B LTR MaLR 153 362 -2 835 63 18 0 chrY 3243379 3243490 -21469589 + L1PA13 LINE L1 6036 6148 -15 23 68 0 0 chrY 3243514 3243558 -21469521 + AT_rich Low_complexity Low_complexity 1 44 0 4759 265 39 22 chrY 3243568 3247828 -21465251 - L1PBa LINE L1 -3387 3475 27 516 282 64 32 chrY 3247868 3248308 -21464771 - L1M4c LINE L1 -4099 3039 2586 956 275 57 51 chrY 3248458 3248720 -21464359 - L1M4c LINE L1 -4452 2686 2427 2119 109 0 23 chrY 3248720 3249023 -21464056 - AluSp SINE Alu -17 296 1 956 275 57 51 chrY 3249023 3249385 -21463694 - L1M4c LINE L1 -4711 2427 1907 * 3594 291 34 14 chrY 3249383 3250432 -21462647 - L1M4c LINE L1 -5782 1077 8 4373 168 37 28 chrY 3250688 3250970 -21462109 + L1MA5 LINE L1 4728 5006 -1294 800 235 0 25 chrY 3250970 3251132 -21461947 + FAM SINE Alu 1 158 -17 4373 168 37 28 chrY 3251132 3252244 -21460835 + L1MA5 LINE L1 5006 6119 -181 1081 191 106 50 chrY 3252246 3252665 -21460414 + LTR22 LTR ERVK 1 509 0 2029 128 0 0 chrY 3252665 3252985 -21460094 - AluY SINE Alu 0 320 1 998 144 39 0 chrY 3252985 3253165 -21459914 + L1MA5 LINE L1 6108 6294 -6 4684 204 28 26 chrY 3253410 3254685 -21458394 - L1MA10 LINE L1 -14 6320 5038 269 305 104 36 chrY 3254832 3255245 -21457834 + L1 LINE L1 3718 4158 -1988 380 304 96 30 chrY 3255388 3255618 -21457461 + L1 LINE L1 4311 4555 -1591 6243 68 2 0 chrY 3255711 3256511 -21456568 - L1PA8 LINE L1 -5 6167 5366 1761 102 0 4 chrY 3256508 3256773 -21456306 + L1PA8 LINE L1 5076 5339 -807 * 953 259 124 45 chrY 3256965 3257432 -21455647 - MLT1J LTR MaLR -7 504 1 205 194 0 0 chrY 3257472 3257508 -21455571 - MER5A DNA MER1_type 0 189 154 1591 236 67 8 chrY 3257511 3257872 -21455207 + MLT1E LTR MaLR 206 587 -6 402 285 5 113 chrY 3258158 3258379 -21454700 - MER3 DNA MER1_type 0 209 13 932 276 114 52 chrY 3258683 3259147 -21453932 + HsTC2a DNA Tc2 3 495 -249 849 206 0 0 chrY 3259156 3259297 -21453782 - FRAM SINE Alu -23 153 13 560 209 118 14 chrY 3259305 3259516 -21453563 + HsTC2a DNA Tc2 499 731 -11 264 258 0 22 chrY 3259528 3259617 -21453462 + (TAA)n Simple_repeat Simple_repeat 3 89 0 28 29 0 0 chrY 3260191 3260226 -21452853 + AT_rich Low_complexity Low_complexity 1 35 0 555 305 79 41 chrY 3260232 3260626 -21452453 + MLT1H1 LTR MaLR 1 409 -146 2486 168 34 6 chrY 3260741 3261241 -21451838 + L1MA3 LINE L1 5786 6299 -6 480 282 84 19 chrY 3261454 3261627 -21451452 + L1MC4 LINE L1 7446 7637 -405 1705 197 28 17 chrY 3261627 3261988 -21451091 - MLT1A1 LTR MaLR 0 365 1 480 282 84 19 chrY 3261988 3262027 -21451052 + L1MC4 LINE L1 7637 7672 -370 676 211 66 13 chrY 3262042 3262194 -21450885 + MER31B LTR ERV1 1 160 -306 3769 182 68 73 chrY 3262238 3263157 -21449922 + MER21A LTR ERV1 1 914 -17 611 237 58 48 chrY 3263188 3263395 -21449684 + MER31B LTR ERV1 254 462 -4 23 0 0 0 chrY 3263541 3263564 -21449515 + AT_rich Low_complexity Low_complexity 1 23 0 210 128 0 0 chrY 3263608 3263647 -21449432 + (TG)n Simple_repeat Simple_repeat 2 40 0 852 257 29 86 chrY 3263884 3264258 -21448821 - HsTC2c DNA Tc2 -3 726 374 391 245 0 0 chrY 3264400 3264494 -21448585 + L1 LINE L1 5203 5296 -850 189 0 0 0 chrY 3264494 3264515 -21448564 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 4143 143 18 83 chrY 3264518 3265411 -21447668 + L1PA6 LINE L1 5309 6143 -11 207 0 0 0 chrY 3265414 3265437 -21447642 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 409 304 82 62 chrY 3265603 3265846 -21447233 - MLT1G1 LTR MaLR -185 410 163 358 285 78 43 chrY 3266062 3266522 -21446557 + L1 LINE L1 4759 5234 -912 266 344 8 8 chrY 3266791 3266913 -21446166 + CT-rich Low_complexity Low_complexity 1 122 0 4519 273 32 21 chrY 3267028 3268016 -21445063 + L1PBa LINE L1 7 1064 -5799 408 20 0 0 chrY 3268016 3268065 -21445014 + (CA)n Simple_repeat Simple_repeat 2 50 0 4519 273 32 21 chrY 3268065 3268637 -21444442 + L1PBa LINE L1 1064 1628 -5235 * 4522 199 64 10 chrY 3268613 3269552 -21443527 + L1PA15 LINE L1 660 1649 -5214 33 25 0 0 chrY 3269553 3269593 -21443486 + AT_rich Low_complexity Low_complexity 1 40 0 7037 214 26 82 chrY 3269593 3271209 -21441870 + L1PA15 LINE L1 1952 3656 -3206 800 204 34 0 chrY 3271209 3271356 -21441723 + AluSp SINE Alu 132 283 -30 180 0 0 0 chrY 3271359 3271379 -21441700 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 7037 214 26 82 chrY 3271379 3272730 -21440349 + L1PA15 LINE L1 3658 4982 -1880 2870 283 58 9 chrY 3272718 3274073 -21439006 + L1M4 LINE L1 2367 3788 -2358 * 5153 192 10 9 chrY 3274166 3275617 -21437462 + L1PA15 LINE L1 5068 6520 -361 585 88 0 0 chrY 3275617 3275697 -21437382 - MADE1 DNA Mariner 0 80 1 5153 192 10 9 chrY 3275697 3276037 -21437042 + L1PA15 LINE L1 6520 6858 -23 243 0 0 0 chrY 3276044 3276071 -21437008 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 559 244 81 11 chrY 3276073 3276376 -21436703 + MSTD LTR MaLR 32 396 0 1493 218 64 8 chrY 3276445 3276803 -21436276 + MSTB1 LTR MaLR 3 380 -52 1739 270 20 30 chrY 3276812 3277138 -21435941 - L1 LINE L1 -3381 2765 2446 528 16 0 0 chrY 3277138 3277199 -21435880 + (TA)n Simple_repeat Simple_repeat 2 62 0 1739 270 20 30 chrY 3277199 3277472 -21435607 - L1 LINE L1 -3700 2446 2172 6207 152 12 3 chrY 3277482 3278724 -21434355 - L1MA1 LINE L1 -7 7714 6461 7027 200 28 20 chrY 3279273 3279352 -21433727 - L1MA1 LINE L1 -1097 6468 6391 1654 150 48 58 chrY 3279352 3279731 -21433348 - THE1C LTR MaLR 0 375 1 7027 200 28 20 chrY 3279731 3281313 -21431766 - L1MA1 LINE L1 -1174 6391 4793 * 18062 197 24 20 chrY 3281311 3283891 -21429188 - L1MA1 LINE L1 -3198 4367 1759 183 42 0 0 chrY 3283891 3283915 -21429164 + (TC)n Simple_repeat Simple_repeat 1 24 0 18062 197 24 20 chrY 3283915 3285620 -21427459 - L1MA1 LINE L1 -5806 1759 63 391 186 30 46 chrY 3285620 3285738 -21427341 + MSTB1 LTR MaLR 249 432 0 187 255 78 98 chrY 3287271 3287373 -21425706 + MIR SINE MIR 137 236 -26 283 288 12 12 chrY 3288060 3288140 -21424939 + HAL1 LINE L1 757 836 -1671 300 281 42 10 chrY 3288214 3288310 -21424769 + L1MEc LINE L1 380 478 -5918 1365 285 41 32 chrY 3288338 3288839 -21424240 + L1MEc LINE L1 46 599 -5797 2291 98 0 7 chrY 3288839 3289144 -21423935 - AluSq SINE Alu -8 305 3 1365 285 41 32 chrY 3289144 3289321 -21423758 + L1MEc LINE L1 599 773 -5623 362 251 181 17 chrY 3289342 3289629 -21423450 + L1MEc LINE L1 980 1313 -5083 1246 256 89 32 chrY 3289655 3290131 -21422948 - LTR40b LTR ERVL 0 462 3 619 215 7 20 chrY 3290131 3290279 -21422800 - MER3 DNA MER1_type -51 158 13 350 325 40 8 chrY 3290322 3290448 -21422631 - MIR SINE MIR -76 186 57 729 280 144 89 chrY 3290486 3290586 -21422493 + MLT1G1 LTR MaLR 1 94 -501 1611 104 27 5 chrY 3290586 3290806 -21422273 + AluSg SINE Alu 1 225 -85 729 280 144 89 chrY 3290806 3291269 -21421810 + MLT1G1 LTR MaLR 94 595 0 2242 180 56 7 chrY 3292506 3292933 -21420146 + MER83 LTR ERV1 1 448 0 1387 183 23 12 chrY 3292933 3293190 -21419889 + MER83-int LTR ERV1 12 271 -4014 535 105 0 0 chrY 3293190 3293266 -21419813 + MSTA LTR MaLR 353 428 0 4084 123 63 11 chrY 3293266 3293915 -21419164 + MSTA-int LTR MaLR 1 683 -897 894 103 76 19 chrY 3293915 3294097 -21418982 + THE1C LTR MaLR 221 375 0 920 307 65 43 chrY 3294435 3294977 -21418102 - HUERS-P3 LTR ERV1 -1298 5231 4692 456 313 44 67 chrY 3295280 3295851 -21417228 - HUERS-P3 LTR ERV1 -1797 5294 3971 276 346 26 6 chrY 3295956 3296112 -21416967 - HUERS-P3 LTR ERV1 -4280 4639 4481 5116 126 7 0 chrY 3296141 3297259 -21415820 - THE1C-int LTR MaLR -413 1167 3 1942 144 87 17 chrY 3297261 3297607 -21415472 - THE1C LTR MaLR 0 375 6 23 0 0 0 chrY 3298339 3298362 -21414717 + AT_rich Low_complexity Low_complexity 1 23 0 2098 185 28 3 chrY 3298407 3298797 -21414282 + MER50-int LTR ERV1 1927 2326 -1959 382 338 62 40 chrY 3299781 3300201 -21412878 + MER50-int LTR ERV1 6257 6685 -520 10931 211 34 59 chrY 3300389 3300822 -21412257 - L1M1 LINE L1 -5073 2492 2049 4702 107 58 69 chrY 3300822 3301653 -21411426 - LTR12 LTR ERV1 0 826 5 10931 211 34 59 chrY 3301653 3304250 -21408829 - L1M1 LINE L1 -5516 2049 17 323 85 34 0 chrY 3305312 3305371 -21407708 + (TCTA)n Simple_repeat Simple_repeat 4 64 0 241 238 0 0 chrY 3305354 3305417 -21407662 + MLT2B1 LTR ERVL 458 520 0 564 384 98 18 chrY 3306231 3306668 -21406411 - L2 LINE L2 -653 2661 2190 617 256 26 67 chrY 3307013 3307139 -21405940 + MIR SINE MIR 4 116 -146 1733 168 4 0 chrY 3307139 3307462 -21405617 - AluJb SINE Alu 0 324 1 617 256 26 67 chrY 3307462 3307604 -21405475 + MIR SINE MIR 116 262 0 483 359 70 16 chrY 3308121 3308550 -21404529 - L2 LINE L2 -1195 2119 1668 2278 100 0 7 chrY 3308602 3308911 -21404168 + AluSg SINE Alu 1 307 -3 259 349 19 9 chrY 3310237 3310343 -21402736 - MIR SINE MIR -105 157 51 563 291 93 0 chrY 3310727 3310909 -21402170 + MLT1E3 LTR MaLR 1 199 -425 450 235 35 0 chrY 3310927 3311042 -21402037 - L1MA9 LINE L1 -22 6290 6172 891 212 35 0 chrY 3311046 3311244 -21401835 - L1MA9 LINE L1 -241 6071 5867 1379 239 68 24 chrY 3311279 3311659 -21401420 + MLT1E3 LTR MaLR 223 619 -5 1191 228 35 25 chrY 3311941 3312257 -21400822 - PABL_B LTR ERV1 0 667 349 295 336 34 39 chrY 3312270 3312478 -21400601 - PABL_B LTR ERV1 -460 207 1 941 243 16 78 chrY 3313139 3313588 -21399491 + L1MB4 LINE L1 609 1029 -5251 507 252 0 67 chrY 3313588 3313632 -21399447 + MER21B LTR ERV1 328 373 -490 2350 118 78 10 chrY 3313632 3314029 -21399050 - MSTA LTR MaLR 0 428 5 507 252 0 67 chrY 3314029 3314103 -21398976 + MER21B LTR ERV1 373 438 -425 2158 190 5 12 chrY 3314240 3314645 -21398434 + MER21B LTR ERV1 455 856 -7 1209 172 10 0 chrY 3314676 3314880 -21398199 + MER21B-int LTR ERV1 18 223 -3968 3079 146 36 9 chrY 3314880 3315477 -21397602 + MER4B LTR ERV1 1 779 0 2126 170 8 16 chrY 3315477 3315859 -21397220 + MER21B-int LTR ERV1 220 598 -3593 3436 154 11 75 chrY 3315859 3316597 -21396482 - LTR8 LTR ERV1 0 691 1 1313 211 13 0 chrY 3316597 3316834 -21396245 + MER21B-int LTR ERV1 1561 1800 -2391 3551 206 22 44 chrY 3316863 3317169 -21395910 + MER21B-int LTR ERV1 1644 1955 -2236 2154 145 47 28 chrY 3317169 3317597 -21395482 + LTR23 LTR ERV1 2 437 0 3551 206 22 44 chrY 3317597 3318105 -21394974 + MER21B-int LTR ERV1 1955 2440 -1751 18049 84 11 12 chrY 3318105 3323836 -21389243 + L1PA6 LINE L1 365 6153 -1 8897 170 45 22 chrY 3323932 3325595 -21387484 + MER21B-int LTR ERV1 2428 4129 -62 2190 232 85 0 chrY 3325680 3326141 -21386938 + MER21B LTR ERV1 1 500 -363 4453 269 77 15 chrY 3326141 3329507 -21383572 + L1MB4 LINE L1 1030 4721 -1661 3336 104 2 0 chrY 3329513 3329965 -21383114 + MLT2A2 LTR ERVL 1 453 0 41522 97 10 2 chrY 3329966 3335575 -21377504 + HERVL-A2 LTR ERVL 2 5654 0 3306 104 4 0 chrY 3335575 3336026 -21377053 + MLT2A2 LTR ERVL 1 453 0 260 197 0 16 chrY 3336041 3336102 -21376977 + L1MB4 LINE L1 4769 4828 -1554 637 179 41 16 chrY 3336124 3336247 -21376832 - FLAM_C SINE Alu -17 126 1 3177 212 99 11 chrY 3336303 3337730 -21375349 + L1MB4 LINE L1 4875 6416 0 431 262 87 59 chrY 3337797 3338186 -21374893 + L1ME3A LINE L1 1173 1572 -4958 31 113 0 0 chrY 3338261 3338411 -21374668 + AT_rich Low_complexity Low_complexity 1 150 0 269 316 27 0 chrY 3338448 3338626 -21374453 + L1ME3A LINE L1 1675 1911 -990 25 31 0 0 chrY 3338841 3338873 -21374206 + AT_rich Low_complexity Low_complexity 1 32 0 353 331 99 11 chrY 3339070 3339401 -21373678 + L1ME3A LINE L1 2334 2684 -3856 229 225 72 45 chrY 3339539 3339650 -21373429 + L1MC5 LINE L1 7331 7444 -517 428 268 36 14 chrY 3339728 3339948 -21373131 + L1MC5 LINE L1 7555 7779 -182 1832 108 37 65 chrY 3340080 3340432 -21372647 + L1MA9 LINE L1 5971 6312 0 21 0 0 0 chrY 3340435 3340456 -21372623 + AT_rich Low_complexity Low_complexity 1 21 0 442 297 14 62 chrY 3340606 3340815 -21372264 - MLT1K LTR MaLR -12 576 378 562 258 126 28 chrY 3343228 3343584 -21369495 + L1ME3A LINE L1 4955 5345 -1195 386 279 37 25 chrY 3343646 3343807 -21369272 + LTR65 LTR ERV1 2 164 -505 323 247 17 33 chrY 3343992 3344112 -21368967 + LTR65 LTR ERV1 539 604 -10 525 257 15 80 chrY 3344122 3344461 -21368618 + L1ME3A LINE L1 5402 5718 -822 1148 261 23 37 chrY 3344511 3344944 -21368135 + L1ME3A LINE L1 5947 6373 -191 1788 215 18 5 chrY 3345602 3345984 -21367095 - MLT1B LTR MaLR -3 387 1 27 0 0 0 chrY 3346026 3346053 -21367026 + AT_rich Low_complexity Low_complexity 1 27 0 1127 173 40 108 chrY 3346163 3346515 -21366564 + MLT1B LTR MaLR 1 328 -62 655 275 26 11 chrY 3346515 3346704 -21366375 - MLT1A1 LTR MaLR 0 365 174 460 192 102 114 chrY 3346772 3346939 -21366140 - MLT1A1 LTR MaLR -171 194 30 286 203 17 0 chrY 3346952 3347011 -21366068 + MLT1B LTR MaLR 331 390 0 5009 152 4 0 chrY 3347155 3348675 -21364404 - L1PA13 LINE L1 0 6814 5282 1135 125 0 0 chrY 3348675 3348827 -21364252 - AluSp SINE Alu -28 285 134 13165 222 23 16 chrY 3348832 3354056 -21359023 - L1PA13 LINE L1 -1510 5287 1 556 190 10 2 chrY 3354113 3354226 -21358853 + L1ME LINE L1 5618 5727 -439 246 219 0 0 chrY 3354354 3354418 -21358661 + (TA)n Simple_repeat Simple_repeat 2 65 0 222 159 23 0 chrY 3354478 3354522 -21358557 + A-rich Low_complexity Low_complexity 1 45 0 365 347 92 20 chrY 3354608 3355052 -21358027 + L1MEc LINE L1 55 530 -5866 295 265 22 49 chrY 3355160 3355345 -21357734 + L1MEc LINE L1 688 867 -5529 * 2168 258 30 27 chrY 3355326 3356218 -21356861 + L1MEc LINE L1 2345 3239 -2976 231 163 0 0 chrY 3356239 3356282 -21356797 - L1PA15-16 LINE L1 -4015 2834 2792 3033 116 28 47 chrY 3356327 3356855 -21356224 + L1PA13 LINE L1 5645 6162 -1 3163 255 37 21 chrY 3356865 3357981 -21355098 + L1 LINE L1 2148 3280 -2866 2361 133 24 5 chrY 3357980 3358355 -21354724 + MSTA-int LTR MaLR 1270 1651 0 * 2212 133 84 30 chrY 3358355 3358415 -21354664 + MSTA LTR MaLR 1 56 -372 2121 132 0 0 chrY 3358415 3358711 -21354368 + AluSx SINE Alu 1 296 -16 2212 133 84 30 chrY 3358711 3359056 -21354023 + MSTA LTR MaLR 56 428 0 416 141 26 0 chrY 3359724 3359802 -21353277 + MADE1 DNA Mariner 1 80 0 210 37 0 0 chrY 3360213 3360240 -21352839 + (TC)n Simple_repeat Simple_repeat 2 28 0 252 234 28 28 chrY 3360242 3360383 -21352696 + (TATAA)n Simple_repeat Simple_repeat 5 145 0 21 57 0 0 chrY 3360837 3360872 -21352207 + AT_rich Low_complexity Low_complexity 1 35 0 337 293 77 24 chrY 3360917 3361163 -21351916 - L1MC5 LINE L1 -209 7752 7494 599 211 184 14 chrY 3361189 3361336 -21351743 + MER5A DNA MER1_type 17 188 -1 252 337 0 0 chrY 3361338 3361427 -21351652 - L1MC5 LINE L1 -527 7434 7346 1204 287 91 48 chrY 3361605 3363152 -21349927 - L1MC4 LINE L1 -735 7226 5612 1395 256 72 88 chrY 3363173 3363728 -21349351 + MLT2B3 LTR ERVL 1 546 -8 1652 232 32 22 chrY 3363732 3364133 -21348946 - LTR52 LTR ERVL -10 411 7 542 240 101 29 chrY 3364133 3364227 -21348852 - L1MC4 LINE L1 -2215 5593 5507 183 42 0 0 chrY 3364227 3364251 -21348828 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 542 240 101 29 chrY 3364251 3364364 -21348715 - L1MC4 LINE L1 -2301 5507 5371 24 0 0 0 chrY 3364482 3364506 -21348573 + AT_rich Low_complexity Low_complexity 1 24 0 493 201 186 25 chrY 3366490 3366689 -21346390 - L1MC/D LINE L1 -2323 5554 5324 245 314 69 25 chrY 3366943 3367188 -21345891 - L1MC/D LINE L1 -1167 5048 4793 3633 142 44 64 chrY 3367426 3368130 -21344949 + LTR8 LTR ERV1 2 691 0 734 189 154 12 chrY 3368138 3368307 -21344772 - MER6B DNA MER2_type -3 207 15 245 326 0 11 chrY 3370559 3370648 -21342431 - Charlie8 DNA MER1_type -2199 218 131 672 241 14 50 chrY 3371935 3372311 -21340768 - L1MEc LINE L1 -3669 2546 688 467 349 36 45 chrY 3372337 3372669 -21340410 - L1MEc LINE L1 -5830 566 238 323 306 31 0 chrY 3374271 3374369 -21338710 + L1MC4 LINE L1 6602 6702 -1340 2131 124 7 7 chrY 3374464 3374771 -21338308 + AluSg1 SINE Alu 1 307 -2 433 182 91 0 chrY 3374838 3374937 -21338142 - L1ME LINE L1 -439 5727 5620 16923 209 31 9 chrY 3375000 3379196 -21333883 + L1PA13 LINE L1 1 4468 -2346 180 0 0 0 chrY 3379196 3379216 -21333863 + (CAA)n Simple_repeat Simple_repeat 2 21 0 16923 209 31 9 chrY 3379216 3381613 -21331466 + L1PA13 LINE L1 4468 6811 -3 5754 201 25 29 chrY 3382699 3384198 -21328881 + L1PB1 LINE L1 3871 5363 -783 894 106 0 8 chrY 3384191 3384323 -21328756 + L1PA11 LINE L1 5725 5855 -319 * 5077 110 26 3 chrY 3384322 3385083 -21327996 + L1PB1 LINE L1 5367 6145 -6 249 362 75 32 chrY 3385120 3385308 -21327771 - MLT1K LTR MaLR -188 400 205 2909 155 8 10 chrY 3385558 3386055 -21327024 + L1PA13 LINE L1 5668 6163 0 244 277 24 0 chrY 3386057 3386140 -21326939 - L1M4 LINE L1 -1587 4559 4475 1877 243 34 22 chrY 3386164 3386610 -21326469 - L1M3 LINE L1 -393 5790 5336 2129 127 3 3 chrY 3386610 3386909 -21326170 - AluSx SINE Alu -13 299 1 1877 243 34 22 chrY 3386909 3387068 -21326011 - L1M3 LINE L1 -847 5336 5180 5138 202 9 36 chrY 3387072 3387773 -21325306 - MSTA-int LTR MaLR -610 1041 323 2240 114 0 10 chrY 3387773 3388080 -21324999 - AluSx SINE Alu -5 307 4 5138 202 9 36 chrY 3388080 3388096 -21324983 - MSTA-int LTR MaLR -1328 323 308 2108 102 0 60 chrY 3388096 3388411 -21324668 - AluSg SINE Alu -12 298 3 5138 202 9 36 chrY 3388411 3388574 -21324505 - MSTA-int LTR MaLR -1343 308 192 3046 186 26 2 chrY 3388574 3389118 -21323961 - MER41D LTR ERV1 0 557 1 5138 202 9 36 chrY 3389118 3389305 -21323774 - MSTA-int LTR MaLR -1459 192 1 2249 165 54 2 chrY 3389305 3389712 -21323367 - MSTA LTR MaLR 0 428 1 2032 136 10 0 chrY 3389987 3390282 -21322797 - AluSg SINE Alu -12 298 1 26 0 0 0 chrY 3390321 3390347 -21322732 + AT_rich Low_complexity Low_complexity 1 26 0 482 276 111 19 chrY 3390374 3390889 -21322190 - L1M3 LINE L1 -1445 4701 4140 660 215 27 16 chrY 3390986 3391172 -21321907 - MER53 DNA DNA 0 189 2 256 290 91 46 chrY 3391627 3392614 -21320465 - L1M3 LINE L1 -2663 3483 2452 1275 233 73 59 chrY 3392701 3393135 -21319944 - MLT2C2 LTR ERVL -20 534 1 307 238 171 45 chrY 3393170 3393439 -21319640 - L1M3 LINE L1 -3734 2412 2110 27 0 0 0 chrY 3393829 3393856 -21319223 + AT_rich Low_complexity Low_complexity 1 27 0 1068 78 0 0 chrY 3393867 3393995 -21319084 + AluSq/x SINE Alu 6 133 -180 219 69 0 0 chrY 3393995 3394024 -21319055 + (A)n Simple_repeat Simple_repeat 1 29 0 256 150 0 0 chrY 3394042 3394082 -21318997 + Alu SINE Alu 252 291 -11 624 274 48 6 chrY 3394454 3394622 -21318457 - MER20 DNA MER1_type -11 208 34 236 116 93 0 chrY 3394655 3394698 -21318381 - MLT1D LTR MaLR -9 496 450 17317 191 45 38 chrY 3394702 3398220 -21314859 + L1MA2 LINE L1 12 3504 -4219 195 42 0 0 chrY 3398220 3398244 -21314835 + (GGAGA)n Simple_repeat Simple_repeat 1 24 0 17317 191 45 38 chrY 3398244 3398350 -21314729 + L1MA2 LINE L1 3504 3608 -4115 2307 82 0 0 chrY 3398350 3398691 -21314388 + AluY SINE Alu 1 311 0 17317 191 45 38 chrY 3398691 3401248 -21311831 + L1MA2 LINE L1 3608 6290 -1433 1902 88 0 0 chrY 3401248 3401487 -21311592 + AluY SINE Alu 1 239 -72 17317 191 45 38 chrY 3401487 3402932 -21310147 + L1MA2 LINE L1 6290 7723 0 279 79 0 0 chrY 3402989 3403027 -21310052 + (A)n Simple_repeat Simple_repeat 1 38 0 434 327 39 13 chrY 3403058 3403364 -21309715 + L1 LINE L1 4701 5014 -1132 434 165 0 10 chrY 3403670 3403767 -21309312 + SVA Other Other 432 527 -859 5537 102 21 5 chrY 3403871 3404760 -21308319 - MER51-int LTR ERV1 -5103 2713 1810 676 188 19 117 chrY 3404760 3404938 -21308141 - MER4A LTR ERV1 -130 517 364 281 167 0 0 chrY 3404980 3405028 -21308051 - MER4A LTR ERV1 -566 98 51 4322 151 44 24 chrY 3405028 3405446 -21307633 - MER51-int LTR ERV1 -6305 1511 1068 2091 114 7 10 chrY 3405446 3405753 -21307326 - AluSg SINE Alu -3 307 2 4322 151 44 24 chrY 3405753 3406127 -21306952 - MER51-int LTR ERV1 -6748 1068 703 3466 53 2 7 chrY 3406127 3406577 -21306502 + LTR7 LTR ERV1 1 448 -2 17113 96 6 25 chrY 3406579 3409603 -21303476 + HERVH LTR ERV1 1 2987 -4726 839 150 27 0 chrY 3409597 3409744 -21303335 + HERVH LTR ERV1 3140 3290 -4423 * 1340 149 0 5 chrY 3409734 3409948 -21303131 + HERVH LTR ERV1 3492 3704 -4009 1350 137 17 17 chrY 3410034 3410267 -21302812 + HERVH LTR ERV1 5587 5819 -1894 2055 70 55 16 chrY 3410290 3410602 -21302477 + HERVH LTR ERV1 7390 7713 0 3334 62 2 7 chrY 3410602 3411052 -21302027 + LTR7 LTR ERV1 1 448 -2 3562 174 56 16 chrY 3411052 3411734 -21301345 - MER51B-int LTR ERV1 -7107 709 1 2341 119 57 0 chrY 3411738 3412091 -21300988 - MER51B LTR ERV1 -4 373 1 2290 65 7 19 chrY 3412284 3412591 -21300488 + AluY SINE Alu 1 303 -8 4744 128 31 7 chrY 3412767 3413518 -21299561 + MER4E LTR ERV1 1 769 -10 22 35 0 0 chrY 3413871 3413900 -21299179 + AT_rich Low_complexity Low_complexity 1 29 0 1238 191 17 8 chrY 3414677 3414913 -21298166 + AluJb SINE Alu 66 303 -9 519 17 0 0 chrY 3415102 3415162 -21297917 + (TAGA)n Simple_repeat Simple_repeat 2 61 0 514 295 70 0 chrY 3415373 3415529 -21297550 - MIR SINE MIR -42 220 54 8903 221 27 12 chrY 3415574 3417448 -21295631 + L1MA4 LINE L1 14 1915 -5650 279 350 35 2 chrY 3417555 3417986 -21295093 + L1MA1 LINE L1 5858 6302 0 288 77 0 0 chrY 3418043 3418082 -21294997 + (A)n Simple_repeat Simple_repeat 1 39 0 4785 173 70 37 chrY 3418100 3418718 -21294361 + L1MA4 LINE L1 6100 6696 -1023 2248 117 0 0 chrY 3418718 3419027 -21294052 + AluSc SINE Alu 1 309 0 4785 173 70 37 chrY 3419027 3419964 -21293115 + L1MA4 LINE L1 6696 7708 -11 2365 71 3 0 chrY 3419964 3420259 -21292820 - AluY SINE Alu -15 296 1 1542 252 63 43 chrY 3420338 3420783 -21292296 - MLT1D LTR MaLR -51 454 1 378 323 44 44 chrY 3420784 3420942 -21292137 - MLT1H LTR MaLR -210 339 182 387 191 53 11 chrY 3421204 3421298 -21291781 - L1MEd LINE L1 -4867 1252 1155 260 241 55 21 chrY 3421335 3421480 -21291599 - HAL1 LINE L1 -335 2172 2023 1361 101 10 0 chrY 3421865 3422063 -21291016 + L1PB1 LINE L1 5950 6149 -2 22 0 0 0 chrY 3422064 3422086 -21290993 + AT_rich Low_complexity Low_complexity 1 22 0 1416 255 125 33 chrY 3422114 3422816 -21290263 + HAL1 LINE L1 1010 1776 -731 5431 257 14 10 chrY 3422894 3425140 -21287939 - L1PA12 LINE L1 -3154 4430 2233 308 360 13 20 chrY 3425709 3425862 -21287217 - L1PA12 LINE L1 -5269 2305 2154 693 404 25 18 chrY 3426046 3426482 -21286597 - L1PA12 LINE L1 -6348 1226 788 1867 221 26 0 chrY 3426493 3426873 -21286206 - MER57A LTR ERV1 -6 397 8 2291 109 0 0 chrY 3427301 3427605 -21285474 + AluY SINE Alu 1 304 -7 537 192 295 17 chrY 3428527 3428839 -21284240 + LTR29 LTR ERV1 1 424 -198 * 777 160 72 46 chrY 3428807 3429001 -21284078 + LTR49 LTR ERV1 395 593 -2 224 352 48 8 chrY 3429511 3429636 -21283443 - L2 LINE L2 -43 3270 3141 696 343 53 60 chrY 3429802 3429823 -21283256 - L2 LINE L2 -157 3156 3136 378 0 0 0 chrY 3429823 3429865 -21283214 + (TA)n Simple_repeat Simple_repeat 2 43 0 696 343 53 60 chrY 3429865 3430581 -21282498 - L2 LINE L2 -177 3136 2435 1156 201 69 3 chrY 3431433 3431722 -21281357 + L1MB5 LINE L1 5616 5923 -251 3550 246 25 37 chrY 3431740 3432880 -21280199 + L1MB5 LINE L1 4194 5319 -827 3048 205 50 72 chrY 3432885 3433186 -21279893 + L1MB5 LINE L1 5274 5580 -594 1141 248 92 86 chrY 3433186 3433794 -21279285 + LTR9 LTR ERV1 1 612 0 3048 205 50 72 chrY 3433794 3434411 -21278668 + L1MB5 LINE L1 5580 6172 -2 2418 101 62 0 chrY 3435300 3435655 -21277424 - MER51B LTR ERV1 0 377 1 7670 150 81 43 chrY 3435659 3437754 -21275325 - MER51B-int LTR ERV1 -4 7812 5407 1869 139 8 6 chrY 3437748 3438138 -21274941 - MER51-int LTR ERV1 -2570 2647 2213 * 1809 154 78 17 chrY 3438134 3438595 -21274484 - MER51-int LTR ERV1 -2774 3172 1474 * 381 141 103 0 chrY 3438567 3438645 -21274434 - MER51-int LTR ERV1 -4489 3327 3242 * 1521 134 100 3 chrY 3438628 3438948 -21274131 - MER51-int LTR ERV1 -4755 3061 2711 1622 183 42 28 chrY 3438981 3439412 -21273667 + SVA Other Other 432 868 -518 6073 149 31 5 chrY 3439583 3440695 -21272384 + L1MA1 LINE L1 1893 3033 -4532 * 10149 206 19 2 chrY 3440693 3442446 -21270633 + L1MA1 LINE L1 4342 6144 -1421 186 43 0 0 chrY 3442446 3442469 -21270610 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 10149 206 19 2 chrY 3442469 3442997 -21270082 + L1MA1 LINE L1 6144 6662 -903 1628 153 220 11 chrY 3442997 3443182 -21269897 - MSTA LTR MaLR 0 428 283 180 0 0 0 chrY 3443182 3443202 -21269877 + (GA)n Simple_repeat Simple_repeat 1 20 0 1628 153 220 11 chrY 3443202 3443370 -21269709 - MSTA LTR MaLR -145 283 1 9438 144 7 35 chrY 3443370 3444992 -21268087 - MSTA-int LTR MaLR 0 1580 3 1206 181 141 82 chrY 3444994 3445348 -21267731 - MSTA LTR MaLR 0 428 1 6335 118 36 9 chrY 3445363 3446384 -21266695 + L1MA1 LINE L1 6673 7721 0 278 133 0 0 chrY 3446391 3446436 -21266643 + L1PA16 LINE L1 6120 6164 -2 2947 6 0 0 chrY 3447567 3447885 -21265194 + AluYb8 SINE Alu 1 318 0 486 33 0 0 chrY 3448083 3448143 -21264936 + (CA)n Simple_repeat Simple_repeat 1 60 0 27 29 0 0 chrY 3448144 3448178 -21264901 + AT_rich Low_complexity Low_complexity 1 34 0 490 178 69 23 chrY 3449121 3449295 -21263784 - MER53 DNA DNA -1 188 7 22 94 0 0 chrY 3449378 3449442 -21263637 + AT_rich Low_complexity Low_complexity 1 64 0 203 316 105 0 chrY 3449939 3450034 -21263045 - MIR SINE MIR -54 208 104 1412 258 31 19 chrY 3450060 3450478 -21262601 + L1ME1 LINE L1 5695 6117 -49 36 53 0 0 chrY 3450483 3450540 -21262539 + AT_rich Low_complexity Low_complexity 1 57 0 22 0 0 0 chrY 3450855 3450877 -21262202 + AT_rich Low_complexity Low_complexity 1 22 0 1175 251 59 20 chrY 3450906 3451353 -21261726 + L1ME2 LINE L1 5764 6155 -9 25 31 0 0 chrY 3451354 3451386 -21261693 + AT_rich Low_complexity Low_complexity 1 32 0 196 280 67 13 chrY 3452126 3452201 -21260878 + L2 LINE L2 3164 3242 -71 1991 213 72 0 chrY 3452241 3452631 -21260448 - MER47B DNA MER2_type 0 418 1 624 353 19 8 chrY 3453147 3453405 -21259674 + MIR SINE MIR 1 261 -1 5781 116 12 3 chrY 3455414 3456490 -21256589 - L1PB1 LINE L1 0 6151 5069 239 200 0 0 chrY 3456498 3456558 -21256521 + L1 LINE L1 4560 4619 -1527 1909 229 69 55 chrY 3457522 3458178 -21254901 - L1ME2 LINE L1 -1 6163 5499 1492 207 58 29 chrY 3458183 3458526 -21254553 - MLT1A1 LTR MaLR -12 353 1 347 296 84 7 chrY 3458606 3458748 -21254331 - L1MEc LINE L1 -5716 680 528 311 250 39 62 chrY 3458759 3458887 -21254192 - L1MEc LINE L1 -6269 127 3 5065 246 17 6 chrY 3458899 3460095 -21252984 + L1PBa LINE L1 6 1214 -5649 1987 116 18 7 chrY 3460201 3460485 -21252594 - AluSq SINE Alu -26 287 1 349 111 0 0 chrY 3461272 3461326 -21251753 - AluSc SINE Alu -2 297 244 808 113 57 38 chrY 3461427 3461586 -21251493 + AluJb SINE Alu 32 193 -119 423 76 167 15 chrY 3461586 3461652 -21251427 + AluSg/x SINE Alu 76 151 -159 1959 97 0 30 chrY 3461678 3461945 -21251134 - AluSc SINE Alu -12 297 39 184 245 19 0 chrY 3462162 3462215 -21250864 - L2 LINE L2 -70 3243 3190 2158 114 3 0 chrY 3463324 3463613 -21249466 - AluSx SINE Alu -17 295 6 2182 125 3 0 chrY 3463624 3463927 -21249152 - AluSx SINE Alu -8 304 1 2222 106 3 3 chrY 3463938 3464241 -21248838 - AluSx SINE Alu -7 305 3 610 62 0 0 chrY 3464265 3464345 -21248734 - Alu SINE Alu -12 299 220 2474 148 5 2 chrY 3464445 3464858 -21248221 + L1PBa LINE L1 1230 1643 -5220 * 13214 207 30 15 chrY 3464829 3468452 -21244627 + L1PB2 LINE L1 11 3818 -2390 4114 75 2 0 chrY 3468452 3468985 -21244094 + L1PA7 LINE L1 5618 6151 -3 13214 207 30 15 chrY 3468985 3471414 -21241665 + L1PB2 LINE L1 3818 6207 -1 1679 278 42 4 chrY 3471419 3472109 -21240970 - L1M4 LINE L1 -3113 3033 2318 467 273 54 88 chrY 3472428 3472890 -21240189 + MLT1H LTR MaLR 1 548 -1 258 140 0 0 chrY 3473046 3473096 -21239983 + L1MA9 LINE L1 6212 6261 -51 977 153 18 0 chrY 3474681 3474851 -21238228 + L1P4 LINE L1 5429 5601 -562 1968 143 32 37 chrY 3475160 3475537 -21237542 + THE1C LTR MaLR 1 375 0 1868 162 12 137 chrY 3475543 3476032 -21237047 + MSTC LTR MaLR 1 428 0 357 230 98 102 chrY 3476478 3476743 -21236336 + L1ME2 LINE L1 658 921 -5198 306 212 68 53 chrY 3476804 3476936 -21236143 + L1MEc LINE L1 19 152 -6271 * 778 273 42 26 chrY 3476916 3477294 -21235785 + L1ME2 LINE L1 4436 4819 -1310 1263 142 71 0 chrY 3477294 3477547 -21235532 - L1MC2 LINE L1 -1 6343 6073 2077 209 41 111 chrY 3477554 3477754 -21235325 - MER74A LTR ERVL 0 622 410 2230 108 0 3 chrY 3477754 3478050 -21235029 + AluY SINE Alu 3 297 -14 2077 209 41 111 chrY 3478050 3478463 -21234616 - MER74A LTR ERVL -212 410 26 557 220 129 21 chrY 3478463 3478649 -21234430 - L1MC2 LINE L1 -269 6075 5870 2150 110 0 3 chrY 3478668 3478958 -21234121 + AluY SINE Alu 1 289 -22 773 288 50 11 chrY 3478958 3479337 -21233742 + L1ME2 LINE L1 4830 5223 -906 832 279 46 53 chrY 3479338 3479944 -21233135 + MLT1E3 LTR MaLR 1 624 0 348 245 102 7 chrY 3479944 3480091 -21232988 + L1ME2 LINE L1 5220 5380 -749 1983 219 28 34 chrY 3480094 3480597 -21232482 - MLT1D LTR MaLR -5 500 1 2046 267 44 21 chrY 3480597 3481343 -21231736 + L1ME2 LINE L1 5374 6136 -11 400 258 105 53 chrY 3481351 3481541 -21231538 + L1MEc LINE L1 2345 2544 -4578 494 217 101 14 chrY 3481665 3481803 -21231276 - MLT1E LTR MaLR -428 165 16 623 302 13 38 chrY 3481820 3482055 -21231024 - MLT1E-int LTR MaLR -2 1369 1141 1903 216 76 24 chrY 3482073 3482495 -21230584 + MLT2B1 LTR ERVL 1 444 -76 533 264 22 51 chrY 3482832 3483010 -21230069 - MLT1E-int LTR MaLR -507 864 692 3237 107 9 34 chrY 3483149 3483673 -21229406 - MER9 LTR ERVK 0 511 1 897 265 43 7 chrY 3483742 3484044 -21229035 - MLT1E-int LTR MaLR -768 603 291 227 269 84 25 chrY 3484208 3484327 -21228752 - MLT2F LTR ERVL 0 663 538 299 261 0 0 chrY 3484506 3484571 -21228508 - MLT1E1 LTR MaLR -412 242 178 258 263 53 0 chrY 3484618 3484694 -21228385 - MLT1E1 LTR MaLR -507 117 38 * 372 341 0 7 chrY 3484692 3484827 -21228252 - MLT2F LTR ERVL -524 139 6 609 287 93 8 chrY 3485075 3485312 -21227767 + L1ME2 LINE L1 5899 6155 -9 626 267 22 30 chrY 3485358 3485628 -21227451 + L1MEd LINE L1 975 1242 -4877 180 240 50 140 chrY 3485630 3485730 -21227349 + L2 LINE L2 3221 3311 -2 457 343 43 30 chrY 3486389 3486645 -21226434 + L1ME2 LINE L1 5386 5637 -527 765 164 0 0 chrY 3486645 3486779 -21226300 + L1PB1 LINE L1 6016 6149 -2 457 343 43 30 chrY 3486779 3487029 -21226050 + L1ME2 LINE L1 5637 5899 -265 345 331 43 61 chrY 3487072 3487447 -21225632 + L1M3d LINE L1 413 780 -5523 3908 221 99 56 chrY 3487710 3489497 -21223582 + L1M3d LINE L1 777 2544 -3838 1342 207 6 48 chrY 3489501 3489815 -21223264 + AluJo SINE Alu 12 312 0 875 256 77 3 chrY 3489840 3490164 -21222915 + L1M3d LINE L1 2552 2899 -3483 5980 106 1 2 chrY 3490170 3490994 -21222085 + L1PA13 LINE L1 15 837 -5624 5466 128 20 1 chrY 3490994 3491587 -21221492 + L1PA13 LINE L1 4899 5479 -999 207 0 0 0 chrY 3491587 3491610 -21221469 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5466 128 20 1 chrY 3491610 3492566 -21220513 + L1PA13 LINE L1 5479 6467 -11 1093 237 13 43 chrY 3492806 3493106 -21219973 - AluJo SINE Alu -11 291 1 209 345 23 100 chrY 3493263 3493434 -21219645 - L2 LINE L2 -408 2906 2754 2216 120 3 3 chrY 3493434 3493743 -21219336 - AluSx SINE Alu -3 309 1 209 345 23 100 chrY 3493743 3493791 -21219288 - L2 LINE L2 -560 2754 2704 351 64 0 0 chrY 3493801 3493848 -21219231 + MADE1 DNA Mariner 33 79 -1 329 415 0 6 chrY 3493849 3494008 -21219071 - L2 LINE L2 -607 2707 2550 22 0 0 0 chrY 3494121 3494143 -21218936 + AT_rich Low_complexity Low_complexity 1 22 0 345 265 60 20 chrY 3494515 3494666 -21218413 + L1M3d LINE L1 2640 2796 -3586 818 308 101 56 chrY 3494730 3495428 -21217651 + L1M3d LINE L1 2903 3677 -2705 2609 20 0 7 chrY 3495428 3495752 -21217327 + AluYa5 SINE Alu 1 322 0 818 308 101 56 chrY 3495752 3496054 -21217025 + L1M3d LINE L1 3677 3964 -2418 1005 172 0 0 chrY 3496054 3496211 -21216868 + FRAM SINE Alu 1 152 -24 29 0 0 0 chrY 3496212 3496241 -21216838 + AT_rich Low_complexity Low_complexity 1 29 0 371 279 99 23 chrY 3496350 3496522 -21216557 + MLT1J LTR MaLR 320 504 -7 299 294 35 0 chrY 3496557 3496642 -21216437 - HERV16 LTR ERVL -4907 89 2 579 288 138 68 chrY 3496656 3497056 -21216023 - LTR16A LTR ERVL -14 443 16 245 200 57 0 chrY 3497180 3497250 -21215829 + L1MC/D LINE L1 5368 5441 -2367 2280 149 78 7 chrY 3497315 3497737 -21215342 + LTR47A LTR ERVL 1 452 0 2015 194 45 29 chrY 3497836 3498455 -21214624 + L1M3 LINE L1 5065 5697 -486 293 279 15 22 chrY 3499065 3499201 -21213878 - L1MEd LINE L1 -5061 1058 924 1983 132 3 3 chrY 3499207 3499495 -21213584 + AluSx SINE Alu 1 288 -24 488 244 9 0 chrY 3499547 3499662 -21213417 - L1ME1 LINE L1 -20 6146 6031 14761 236 21 19 chrY 3499675 3504383 -21208696 - L1PA13 LINE L1 -847 5950 1220 2954 296 43 19 chrY 3504398 3505219 -21207860 - L1PA13 LINE L1 -5947 840 1 3276 234 25 16 chrY 3505254 3506168 -21206911 - L1 LINE L1 -1595 4551 3630 768 228 13 0 chrY 3506177 3506335 -21206744 + MLT1A1 LTR MaLR 1 160 -205 12378 133 7 11 chrY 3506335 3508379 -21204700 + L1P LINE L1 3236 5271 -875 7641 112 6 31 chrY 3508402 3509643 -21203436 - L1P LINE L1 -2733 3413 2205 1663 76 0 0 chrY 3509643 3509853 -21203226 - AluY SINE Alu -8 303 94 5478 220 3 11 chrY 3509862 3511092 -21201987 + L1P LINE L1 2674 3894 -2252 1619 186 0 24 chrY 3511096 3511391 -21201688 + AluJb SINE Alu 1 288 -24 387 158 0 10 chrY 3511419 3511509 -21201570 + L1M4 LINE L1 3869 3955 -2191 23 54 0 0 chrY 3512576 3512613 -21200466 + AT_rich Low_complexity Low_complexity 1 37 0 21 36 0 0 chrY 3513013 3513041 -21200038 + AT_rich Low_complexity Low_complexity 1 28 0 201 167 56 0 chrY 3513268 3513322 -21199757 + (TA)n Simple_repeat Simple_repeat 1 57 0 629 291 35 20 chrY 3514507 3514710 -21198369 + MLT1I LTR MaLR 1 206 -203 1174 333 10 15 chrY 3514997 3515400 -21197679 + MLT1I LTR MaLR 1 401 -8 1213 245 33 18 chrY 3515973 3516308 -21196771 + MER58B DNA MER1_type 2 341 0 3384 210 59 2 chrY 3516898 3517683 -21195396 - L1 LINE L1 -1154 6411 5583 2037 184 124 3 chrY 3517668 3518434 -21194645 + L1MB3 LINE L1 4952 5789 -523 * 715 171 11 17 chrY 3518448 3518629 -21194450 + (TA)n Simple_repeat Simple_repeat 1 180 0 1129 190 47 18 chrY 3518642 3518976 -21194103 + L1MB3 LINE L1 5776 6174 -9 22 0 0 0 chrY 3518981 3519003 -21194076 + AT_rich Low_complexity Low_complexity 1 22 0 3575 167 29 20 chrY 3519003 3519771 -21193308 + L1MA9 LINE L1 5413 6290 -22 376 344 46 0 chrY 3520174 3520323 -21192756 - MIR SINE MIR -6 256 101 263 316 84 26 chrY 3520323 3520478 -21192601 + MIR SINE MIR 1 164 -98 221 273 36 0 chrY 3521167 3521222 -21191857 + L2 LINE L2 3249 3305 -8 5356 163 18 22 chrY 3521313 3522738 -21190341 - L1 LINE L1 -3458 4107 2687 9310 106 3 1 chrY 3522779 3524127 -21188952 + L1P LINE L1 3646 4996 -1150 10135 231 84 25 chrY 3524129 3526389 -21186690 - L1 LINE L1 -4866 2699 559 7485 34 0 3 chrY 3526389 3527472 -21185607 + L1PA5 LINE L1 5074 6154 0 10135 231 84 25 chrY 3527472 3528049 -21185030 - L1 LINE L1 -7006 559 17 320 415 50 0 chrY 3528156 3528315 -21184764 + L2 LINE L2 3104 3270 -2 23 68 0 0 chrY 3528464 3528508 -21184571 + AT_rich Low_complexity Low_complexity 1 44 0 435 128 3 12 chrY 3528786 3528871 -21184208 - L1PA4 LINE L1 -254 5901 5820 2596 51 0 0 chrY 3529077 3529388 -21183691 + AluY SINE Alu 1 311 0 294 29 0 0 chrY 3530325 3530360 -21182719 + (CA)n Simple_repeat Simple_repeat 1 35 0 464 362 40 25 chrY 3530419 3530658 -21182421 + MIR SINE MIR 10 250 -12 258 250 0 0 chrY 3530664 3530720 -21182359 + (ATG)n Simple_repeat Simple_repeat 2 57 0 192 77 0 0 chrY 3531044 3531070 -21182009 + (CA)n Simple_repeat Simple_repeat 1 26 0 1424 192 59 50 chrY 3531072 3531411 -21181668 - MER2 DNA MER2_type -2 342 1 349 276 7 22 chrY 3532177 3532299 -21180780 + MLT1H LTR MaLR 1 162 -387 4457 185 41 4 chrY 3532400 3533404 -21179675 + L1MB8 LINE L1 5124 6178 0 336 283 93 73 chrY 3533464 3533711 -21179368 + L1ME LINE L1 4535 4786 -1360 22 0 0 0 chrY 3534180 3534202 -21178877 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chrY 3534721 3534751 -21178328 + AT_rich Low_complexity Low_complexity 1 30 0 397 283 0 0 chrY 3534906 3535005 -21178074 + L1ME LINE L1 5638 5736 -434 37 62 0 0 chrY 3535138 3535203 -21177876 + AT_rich Low_complexity Low_complexity 1 65 0 188 260 77 10 chrY 3535212 3535316 -21177763 - L2 LINE L2 -150 3163 3053 1091 213 30 22 chrY 3535493 3535761 -21177318 + LTR43 LTR ERV1 177 446 -156 1033 278 108 32 chrY 3535854 3536315 -21176764 - L2 LINE L2 -417 2897 2402 1596 253 26 30 chrY 3536454 3536961 -21176118 - MLT1D LTR MaLR 0 505 1 319 296 175 25 chrY 3537212 3537306 -21175773 - L1ME4a LINE L1 -247 5874 5795 2123 125 47 33 chrY 3537306 3537665 -21175414 - THE1B LTR MaLR 0 364 1 319 296 175 25 chrY 3537665 3537810 -21175269 - L1ME4a LINE L1 -326 5795 5599 315 283 71 0 chrY 3538211 3538310 -21174769 - L1ME4a LINE L1 -2379 5429 5324 800 269 40 31 chrY 3538933 3539160 -21173919 + MIR SINE MIR 1 229 -33 5898 146 13 15 chrY 3539183 3540214 -21172865 + L1MC1 LINE L1 5298 6327 -6 941 130 10 47 chrY 3540206 3540398 -21172681 - L1PA15-16 LINE L1 -4786 2063 1879 * 4947 174 41 22 chrY 3540400 3541451 -21171628 + L1PA16 LINE L1 4438 5528 -638 1944 131 0 17 chrY 3541451 3541742 -21171337 + AluSx SINE Alu 10 295 -17 4947 174 41 22 chrY 3541742 3542388 -21170691 + L1PA16 LINE L1 5528 6160 -6 214 261 0 0 chrY 3544404 3544450 -21168629 - L2 LINE L2 -12 3301 3256 2388 194 58 79 chrY 3544619 3545324 -21167755 + LTR8 LTR ERV1 2 691 0 2223 151 5 13 chrY 3545327 3545705 -21167374 - THE1C LTR MaLR 0 375 1 329 236 57 89 chrY 3545780 3545937 -21167142 + MLT1K LTR MaLR 316 467 -121 23 33 0 0 chrY 3545966 3545996 -21167083 + AT_rich Low_complexity Low_complexity 1 30 0 273 315 79 39 chrY 3546459 3546586 -21166493 + L2 LINE L2 3141 3272 0 238 316 35 57 chrY 3546938 3547166 -21165913 - L1ME LINE L1 -203 5918 5696 319 348 92 27 chrY 3547259 3547443 -21165636 - L1ME LINE L1 -2239 5569 5374 892 224 73 29 chrY 3547642 3547887 -21165192 + LTR16A1 LTR ERVL 198 453 -4 217 384 20 0 chrY 3548197 3548296 -21164783 + L2 LINE L2 2376 2476 -838 1517 174 169 21 chrY 3548303 3548676 -21164403 - MSTA LTR MaLR 0 428 1 8846 201 15 1 chrY 3548676 3550287 -21162792 - MSTA-int LTR MaLR 0 1651 18 1955 148 137 5 chrY 3550320 3550693 -21162386 - MSTA LTR MaLR -6 422 1 4275 128 35 4 chrY 3550717 3551438 -21161641 - L1MA2 LINE L1 -296 7427 6685 11976 201 21 39 chrY 3551473 3554449 -21158630 - L1MA2 LINE L1 -874 6691 3769 811 162 0 15 chrY 3554460 3554596 -21158483 - AluSq/x SINE Alu -179 134 1 13163 180 65 48 chrY 3554597 3555386 -21157693 - L1MA2 LINE L1 -3783 3782 3008 2481 75 10 0 chrY 3555386 3555694 -21157385 - AluY SINE Alu 0 311 1 13163 180 65 48 chrY 3555694 3556420 -21156659 - L1MA2 LINE L1 -4557 3008 2296 2277 97 3 0 chrY 3556420 3556719 -21156360 + AluSp SINE Alu 2 301 -12 13163 180 65 48 chrY 3556719 3558247 -21154832 - L1MA2 LINE L1 -5269 2296 688 6311 205 47 60 chrY 3558238 3559605 -21153474 + L1MC3 LINE L1 5195 5039 -1107 * 225 87 0 0 chrY 3559605 3559651 -21153428 + LTR66 LTR ERVL 394 439 -171 6311 205 47 60 chrY 3559651 3560013 -21153066 + L1MC3 LINE L1 5038 5403 -743 251 136 17 51 chrY 3560015 3560074 -21153005 + MLT1F1 LTR MaLR 46 102 -465 1763 183 109 10 chrY 3560080 3560485 -21152594 + L1MC3 LINE L1 7188 7632 -153 25 31 0 0 chrY 3560534 3560566 -21152513 + AT_rich Low_complexity Low_complexity 1 32 0 * 823 143 7 0 chrY 3560536 3560676 -21152403 + L1MA2 LINE L1 6111 6251 -53 315 0 0 0 chrY 3560676 3560711 -21152368 + (TC)n Simple_repeat Simple_repeat 2 36 0 * 341 53 0 53 chrY 3560710 3560767 -21152312 + (TA)n Simple_repeat Simple_repeat 1 54 0 24 0 0 0 chrY 3560783 3560807 -21152272 + AT_rich Low_complexity Low_complexity 1 24 0 1413 215 22 0 chrY 3560826 3561100 -21151979 + AluJo SINE Alu 3 282 -30 491 0 17 0 chrY 3561100 3561159 -21151920 + (CA)n Simple_repeat Simple_repeat 1 60 0 655 273 57 54 chrY 3562219 3562552 -21150527 + LTR52 LTR ERVL 3 336 -85 349 263 75 25 chrY 3562610 3562770 -21150309 + MER112 DNA MER1_type 68 235 -25 237 309 53 21 chrY 3562913 3563007 -21150072 - MIR3 SINE MIR -102 106 10 1236 277 103 14 chrY 3565689 3566126 -21146953 + MLT1H LTR MaLR 74 549 0 559 285 62 26 chrY 3566218 3566285 -21146794 + MIR SINE MIR 49 112 -150 1247 115 150 0 chrY 3566285 3566485 -21146594 + MER30 DNA MER1_type 1 230 0 559 285 62 26 chrY 3566485 3566610 -21146469 + MIR SINE MIR 112 248 -14 29 84 0 0 chrY 3567151 3567222 -21145857 + AT_rich Low_complexity Low_complexity 1 71 0 2618 7 0 0 chrY 3567463 3567780 -21145299 + AluYb8 SINE Alu 1 317 0 1029 314 73 15 chrY 3567918 3568329 -21144750 - LTR16A LTR ERVL -13 437 3 579 378 91 9 chrY 3568381 3568834 -21144245 - L2 LINE L2 -37 3276 2790 2524 68 0 0 chrY 3568930 3569241 -21143838 - AluY SINE Alu 0 311 1 2419 236 36 11 chrY 3569349 3570015 -21143064 + L1MD1 LINE L1 3593 4275 -1871 282 317 78 14 chrY 3570020 3570162 -21142917 + L1MD1 LINE L1 4201 4351 -1795 2313 215 24 15 chrY 3570175 3570769 -21142310 + L1MD1 LINE L1 5167 5753 -606 4300 94 10 0 chrY 3570786 3571402 -21141677 - L1PA13 LINE L1 0 6163 5542 3680 73 6 4 chrY 3571403 3571894 -21141185 - L1PA11 LINE L1 -55 6119 5628 2035 181 25 85 chrY 3571926 3572242 -21140837 + L1MD1 LINE L1 5745 6079 -163 2429 75 10 0 chrY 3572242 3572550 -21140529 + AluY SINE Alu 1 311 0 2350 73 0 19 chrY 3572553 3572866 -21140213 + AluY SINE Alu 1 307 -4 2035 181 25 85 chrY 3572866 3573074 -21140005 + L1MD1 LINE L1 6081 6241 -1 220 405 12 0 chrY 3574204 3574288 -21138791 - MIR SINE MIR -161 101 17 300 278 42 52 chrY 3574354 3574545 -21138534 + L1MC4a LINE L1 5753 5941 -1867 22 0 0 0 chrY 3575171 3575193 -21137886 + AT_rich Low_complexity Low_complexity 1 22 0 7885 230 45 31 chrY 3576280 3577074 -21136005 - L1MB3 LINE L1 -2 6181 5400 2239 75 3 0 chrY 3577074 3577367 -21135712 - AluY SINE Alu -17 294 1 7885 230 45 31 chrY 3577367 3578673 -21134406 - L1MB3 LINE L1 -783 5400 4114 1763 130 27 3 chrY 3578673 3578972 -21134107 - L1PA13 LINE L1 -1 6162 5857 7885 230 45 31 chrY 3578972 3580556 -21132523 - L1MB3 LINE L1 -2069 4114 2442 225 0 0 0 chrY 3580557 3580582 -21132497 + (CA)n Simple_repeat Simple_repeat 2 26 0 1361 187 65 0 chrY 3580589 3580904 -21132175 - L1PB4 LINE L1 -4 6152 5478 * 1621 238 15 11 chrY 3580903 3581370 -21131709 + L1MA7 LINE L1 4313 4781 -1365 3479 159 63 7 chrY 3581373 3582066 -21131013 + L1MA7 LINE L1 5557 6288 -3 234 244 23 12 chrY 3582162 3582248 -21130831 + (TA)n Simple_repeat Simple_repeat 2 88 0 301 390 13 0 chrY 3582721 3582875 -21130204 - L1ME2 LINE L1 -176 5988 5833 448 292 39 49 chrY 3583819 3584103 -21128976 - L1ME2 LINE L1 -2229 5579 5299 2314 90 0 6 chrY 3584164 3584475 -21128604 - AluSc SINE Alu 0 309 1 2197 209 19 86 chrY 3584577 3585169 -21127910 + MLT2B3 LTR ERVL 1 552 -2 712 289 82 16 chrY 3585253 3585568 -21127511 + L1MC5 LINE L1 5602 5937 -1871 360 0 0 0 chrY 3585577 3585617 -21127462 + (TA)n Simple_repeat Simple_repeat 2 41 0 7934 96 7 1 chrY 3585659 3587589 -21125490 + L1PA7 LINE L1 4204 6150 -4 22 0 0 0 chrY 3587589 3587611 -21125468 + AT_rich Low_complexity Low_complexity 1 22 0 1974 231 97 101 chrY 3588029 3589325 -21123754 + L1MC5 LINE L1 6635 7924 -37 32 57 0 0 chrY 3589380 3589433 -21123646 + AT_rich Low_complexity Low_complexity 1 53 0 3089 121 12 14 chrY 3589460 3589971 -21123108 + L1MA2 LINE L1 5795 6304 0 250 387 0 0 chrY 3590039 3590163 -21122916 + L1MEc LINE L1 296 419 -5977 294 310 41 46 chrY 3590289 3590486 -21122593 + L1MEc LINE L1 492 687 -5709 495 113 0 0 chrY 3590487 3590588 -21122491 + AluSg/x SINE Alu 213 313 0 535 278 107 56 chrY 3590589 3590967 -21122112 + L1MEc LINE L1 680 1086 -5310 180 0 0 0 chrY 3590967 3590987 -21122092 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 535 278 107 56 chrY 3590987 3591058 -21122021 + L1MEc LINE L1 1086 1152 -5244 356 207 0 0 chrY 3591081 3591163 -21121916 + L1MEc LINE L1 2907 2988 -3227 227 31 31 0 chrY 3591536 3591568 -21121511 + (TTTTG)n Simple_repeat Simple_repeat 4 36 0 1957 114 0 4 chrY 3591833 3592105 -21120974 + AluSc SINE Alu 35 305 -4 307 358 43 21 chrY 3592317 3592504 -21120575 - MIR SINE MIR -52 210 20 27 29 0 0 chrY 3592811 3592845 -21120234 + AT_rich Low_complexity Low_complexity 1 34 0 559 308 107 8 chrY 3593017 3593251 -21119828 - MIR SINE MIR -4 258 2 1878 256 99 23 chrY 3593545 3594100 -21118979 - MLT2F LTR ERVL -66 597 1 1869 128 25 4 chrY 3596407 3596688 -21116391 - AluSg SINE Alu -15 295 9 231 218 126 58 chrY 3597145 3597216 -21115863 - MLT1J LTR MaLR -44 467 388 5235 95 70 13 chrY 3597216 3597997 -21115082 - LTR12 LTR ERV1 0 826 1 231 218 126 58 chrY 3597997 3598012 -21115067 - MLT1J LTR MaLR -123 388 375 2062 151 125 8 chrY 3598361 3598744 -21114335 + MSTA LTR MaLR 1 428 0 374 262 89 46 chrY 3598992 3599447 -21113632 + L1ME LINE L1 5295 5774 -396 54 49 0 0 chrY 3599447 3599529 -21113550 + AT_rich Low_complexity Low_complexity 1 82 0 1468 272 29 29 chrY 3599588 3600143 -21112936 - L1M4 LINE L1 -1573 4809 4255 207 0 0 0 chrY 3600151 3600174 -21112905 + (TC)n Simple_repeat Simple_repeat 2 24 0 183 129 0 0 chrY 3600218 3600249 -21112830 + (TA)n Simple_repeat Simple_repeat 2 32 0 210 37 0 0 chrY 3600250 3600277 -21112802 + (TG)n Simple_repeat Simple_repeat 2 28 0 425 223 79 46 chrY 3600305 3600534 -21112545 - L1M4 LINE L1 -2162 4220 3989 186 43 0 0 chrY 3600534 3600557 -21112522 + (TA)n Simple_repeat Simple_repeat 2 24 0 959 277 64 4 chrY 3600611 3601098 -21111981 - L1M4 LINE L1 -2685 3697 3182 255 289 0 0 chrY 3601095 3601178 -21111901 + L1M4 LINE L1 2134 2216 -3930 * 4681 167 13 16 chrY 3601194 3602488 -21110591 + L1PA16 LINE L1 4876 6165 -1 740 205 12 6 chrY 3602522 3602683 -21110396 + AluJb SINE Alu 1 162 -150 303 250 22 0 chrY 3602857 3602949 -21110130 - L1M4 LINE L1 -4543 1841 1748 2133 158 14 19 chrY 3602954 3603320 -21109759 + THE1B LTR MaLR 1 364 0 10124 100 13 0 chrY 3603320 3604822 -21108257 + THE1B-int LTR MaLR 1 1580 0 2055 168 19 19 chrY 3604822 3605186 -21107893 + THE1B LTR MaLR 1 364 0 789 255 105 22 chrY 3605188 3605502 -21107577 - L1M4 LINE L1 -4639 1745 1406 * 2410 200 29 53 chrY 3605500 3606028 -21107051 + L1MB7 LINE L1 5568 6080 -104 571 76 13 0 chrY 3606028 3606107 -21106972 - MADE1 DNA Mariner 0 80 1 2410 200 29 53 chrY 3606107 3606202 -21106877 + L1MB7 LINE L1 6080 6176 -8 1800 182 5 32 chrY 3607117 3607490 -21105589 + MLT1A1 LTR MaLR 3 365 0 202 279 59 0 chrY 3608016 3608084 -21104995 + L2 LINE L2 2288 2359 -955 11090 170 13 7 chrY 3608116 3610067 -21103012 + Tigger1 DNA MER2_type 1 1963 -455 216 0 0 0 chrY 3610067 3610091 -21102988 + (T)n Simple_repeat Simple_repeat 1 24 0 7160 204 14 21 chrY 3610104 3610761 -21102318 - L1PA13 LINE L1 -762 6035 5375 2012 204 117 65 chrY 3610761 3611546 -21101533 + LTR1B LTR ERV1 1 826 0 7160 204 14 21 chrY 3611546 3612165 -21100914 - L1PA13 LINE L1 -1422 5375 4753 2034 178 51 10 chrY 3612165 3612576 -21100503 + MSTA LTR MaLR 1 428 0 7160 204 14 21 chrY 3612576 3613229 -21099850 - L1PA13 LINE L1 -2044 4753 4114 1911 144 64 25 chrY 3613229 3613590 -21099489 - THE1C LTR MaLR 0 375 1 9227 134 39 42 chrY 3613595 3615173 -21097906 - THE1C-int LTR MaLR -6 1574 1 1916 143 88 20 chrY 3615173 3615524 -21097555 - THE1C LTR MaLR 0 375 1 1493 231 26 3 chrY 3615524 3615910 -21097169 - L1PA13 LINE L1 -2679 4118 3724 1966 201 61 25 chrY 3615910 3616354 -21096725 - LTR2B LTR ERV1 0 490 31 6444 229 31 5 chrY 3616372 3618846 -21094233 - L1PA13 LINE L1 -3070 3727 1174 3501 198 3 0 chrY 3618851 3619426 -21093653 - L1PA13 LINE L1 -6209 578 2 2113 153 55 3 chrY 3619437 3619822 -21093257 + Tigger1 DNA MER2_type 1951 2355 -63 469 339 97 63 chrY 3619861 3620078 -21093001 + L2 LINE L2 2394 2602 -711 2508 71 0 0 chrY 3620078 3620389 -21092690 - AluY SINE Alu 0 311 1 469 339 97 63 chrY 3620389 3621056 -21092023 + L2 LINE L2 2602 3313 0 778 253 6 0 chrY 3621242 3621424 -21091655 + MER3 DNA MER1_type 1 183 -26 2559 173 47 49 chrY 3622093 3622705 -21090374 + LTR36 LTR ERV1 1 611 0 180 0 0 0 chrY 3622831 3622851 -21090228 + (A)n Simple_repeat Simple_repeat 1 20 0 223 298 83 50 chrY 3623309 3623462 -21089617 - MIR SINE MIR -66 142 19 780 323 23 19 chrY 3625297 3625557 -21087522 + MIR SINE MIR 2 262 0 4552 279 102 33 chrY 3625982 3630005 -21083074 + L1PA12 LINE L1 9 4404 -3180 2632 224 32 18 chrY 3630001 3630723 -21082356 + L1 LINE L1 5484 6215 -1369 * 2645 88 98 5 chrY 3630723 3631133 -21081946 + LTR7 LTR ERV1 1 448 -2 19696 104 20 12 chrY 3631135 3634099 -21078980 + HERVH LTR ERV1 1 2987 -4726 808 157 27 0 chrY 3634093 3634240 -21078839 + HERVH LTR ERV1 3140 3290 -4423 * 3400 103 4 4 chrY 3634239 3634733 -21078346 + HERVH LTR ERV1 3500 3993 -3720 4316 145 0 3 chrY 3634735 3635399 -21077680 + HERVH LTR ERV1 4488 5149 -2564 1340 103 25 5 chrY 3635414 3635618 -21077461 + HERVH LTR ERV1 5612 5819 -1894 * 2312 106 53 13 chrY 3635616 3635993 -21077086 + HERVH LTR ERV1 7322 7713 0 2623 86 100 5 chrY 3635993 3636402 -21076677 + LTR7 LTR ERV1 1 448 -2 1980 219 60 14 chrY 3636405 3637081 -21075998 + L1PA16 LINE L1 4774 5475 -691 25426 35 1 0 chrY 3637108 3641009 -21072070 - L1PA3 LINE L1 0 6155 2268 10223 61 11 8 chrY 3641010 3642361 -21070718 + L1P LINE L1 676 2030 -4116 3435 157 64 24 chrY 3642363 3643038 -21070041 + L1PA16 LINE L1 5464 6165 -1 24 0 0 0 chrY 3643055 3643079 -21070000 + AT_rich Low_complexity Low_complexity 1 24 0 264 330 28 9 chrY 3643214 3643323 -21069756 - MER20B DNA MER1_type -613 170 60 457 281 47 18 chrY 3643330 3643501 -21069578 + MER69A DNA AcHobo 2 177 0 255 31 0 0 chrY 3644147 3644179 -21068900 + (T)n Simple_repeat Simple_repeat 1 32 0 1626 146 168 76 chrY 3644948 3645318 -21067761 - MER4A LTR ERV1 0 664 261 303 130 0 0 chrY 3645325 3645371 -21067708 - MER4A LTR ERV1 -573 91 46 532 206 57 86 chrY 3645444 3645619 -21067460 - MER58C DNA MER1_type -2 213 44 268 348 0 0 chrY 3645992 3646084 -21066995 - LTR16B LTR ERVL -140 324 233 420 355 14 0 chrY 3646122 3646263 -21066816 - LTR16B LTR ERVL -318 146 4 26 30 0 0 chrY 3646390 3646423 -21066656 + AT_rich Low_complexity Low_complexity 1 33 0 1689 93 0 16 chrY 3646423 3646670 -21066409 - L1MA1 LINE L1 0 6302 6060 2989 191 67 19 chrY 3646685 3646726 -21066353 - L1 LINE L1 -2392 4456 4418 2097 112 20 0 chrY 3646726 3647021 -21066058 - AluSg SINE Alu -9 301 1 2989 191 67 19 chrY 3647021 3647805 -21065274 - L1 LINE L1 -2430 4418 3592 1143 184 29 0 chrY 3647807 3648004 -21065075 - MER41C LTR ERV1 0 554 349 378 61 0 0 chrY 3648004 3648053 -21065026 + (TG)n Simple_repeat Simple_repeat 2 50 0 240 301 0 0 chrY 3648066 3648149 -21064930 - L1MC4 LINE L1 -1346 6696 6614 251 250 0 22 chrY 3648149 3648241 -21064838 - L1MC4 LINE L1 -1339 6703 6614 189 147 0 0 chrY 3648241 3648275 -21064804 + (TATATG)n Simple_repeat Simple_repeat 2 35 0 316 269 0 43 chrY 3648278 3648371 -21064708 + L1MC4 LINE L1 6615 6703 -1339 357 289 0 0 chrY 3648373 3648463 -21064616 - L1MC4 LINE L1 -1339 6703 6614 345 300 0 0 chrY 3648387 3648477 -21064602 + L1MC4 LINE L1 6614 6703 -1339 * 1960 130 47 3 chrY 3648497 3648797 -21064282 - MER41C LTR ERV1 -241 313 1 2919 259 25 9 chrY 3648797 3650290 -21062789 - L1 LINE L1 -3255 3593 2077 1234 223 68 7 chrY 3650864 3651142 -21061937 - AluJo SINE Alu -7 295 1 2429 253 53 14 chrY 3651375 3652430 -21060649 - L1M4c LINE L1 -2299 4658 3563 1084 289 45 40 chrY 3652545 3653291 -21059788 - L1M4c LINE L1 -4391 2566 1759 1192 42 0 0 chrY 3653302 3653446 -21059633 - L1PA3 LINE L1 -3 6152 6009 593 29 0 0 chrY 3653446 3653516 -21059563 + L1P1 LINE L1 5701 5770 -385 316 181 183 17 chrY 3653545 3653700 -21059379 - L1M4c LINE L1 -5107 1748 1563 2512 162 24 2 chrY 3653710 3654129 -21058950 + MSTA LTR MaLR 1 428 0 5640 220 18 11 chrY 3654129 3655282 -21057797 + MSTA-int LTR MaLR 1 1161 -490 1845 153 23 3 chrY 3655282 3655583 -21057496 - MSTA LTR MaLR -119 309 3 708 152 32 0 chrY 3655585 3655710 -21057369 - MSTA-int LTR MaLR 0 1651 1523 1614 120 0 0 chrY 3655710 3655951 -21057128 + L1PA13 LINE L1 5915 6155 -8 2186 281 96 24 chrY 3655955 3656797 -21056282 - L1M4c LINE L1 -5888 971 69 363 324 60 0 chrY 3656865 3657047 -21056032 + LTR67 LTR ERVL 363 555 -2 5136 230 20 19 chrY 3657714 3658755 -21054324 - L1MC1 LINE L1 -6 6607 5568 4784 44 5 2 chrY 3658755 3659344 -21053735 - LTR10C LTR ERV1 0 591 1 5136 230 20 19 chrY 3659344 3660751 -21052328 - L1MC1 LINE L1 -1045 5568 4143 7690 204 91 40 chrY 3660760 3661552 -21051527 - L1MC1 LINE L1 -3709 2717 1967 1847 230 24 7 chrY 3661552 3661969 -21051110 - MSTB LTR MaLR 0 426 3 7690 204 91 40 chrY 3661969 3663752 -21049327 - L1MC1 LINE L1 -4459 1967 17 21 36 0 0 chrY 3664194 3664222 -21048857 + AT_rich Low_complexity Low_complexity 1 28 0 198 0 0 0 chrY 3664257 3664279 -21048800 + (A)n Simple_repeat Simple_repeat 1 22 0 2196 121 0 7 chrY 3665188 3665493 -21047586 + AluSq SINE Alu 1 303 -10 322 232 36 27 chrY 3666077 3666189 -21046890 - L2 LINE L2 -518 2796 2684 300 311 108 50 chrY 3666196 3666418 -21046661 + L1PBb LINE L1 12 246 -6603 509 257 57 54 chrY 3667199 3667438 -21045641 + L1PBb LINE L1 1471 1708 -5140 2138 107 16 26 chrY 3667438 3667746 -21045333 - AluSp SINE Alu -8 305 1 509 257 57 54 chrY 3667746 3667951 -21045128 + L1PBb LINE L1 1708 2009 -4839 8118 218 91 27 chrY 3667952 3668849 -21044230 + L1P LINE L1 757 1595 -5253 7353 33 0 0 chrY 3668849 3669731 -21043348 + L1PA4 LINE L1 5271 6152 -3 8118 218 91 27 chrY 3669731 3671178 -21041901 + L1P LINE L1 1595 3251 -3597 22 0 0 0 chrY 3671597 3671619 -21041460 + AT_rich Low_complexity Low_complexity 1 22 0 225 0 0 0 chrY 3671839 3671864 -21041215 + (TG)n Simple_repeat Simple_repeat 2 26 0 4553 245 19 7 chrY 3672041 3673648 -21039431 + L1MA2 LINE L1 1 1730 -5835 * 5482 131 1 1 chrY 3673641 3674497 -21038582 + L1PA13 LINE L1 5307 6162 -1 6878 180 39 17 chrY 3674535 3675977 -21037102 + L1MA2 LINE L1 1716 3189 -4376 429 233 193 7 chrY 3676055 3676205 -21036874 - MER2 DNA MER2_type 0 345 168 281 193 0 18 chrY 3676259 3676316 -21036763 + MLT1G1 LTR MaLR 7 62 -533 5191 31 3 0 chrY 3676328 3676942 -21036137 - L1PA4 LINE L1 0 6155 5540 13543 180 25 11 chrY 3676942 3681423 -21031656 + L1MA2 LINE L1 3177 7723 0 227 86 0 0 chrY 3681701 3681736 -21031343 + L1M2 LINE L1 5767 5801 -490 275 313 78 43 chrY 3681747 3681862 -21031217 + MIR3 SINE MIR 46 164 -44 1950 145 13 0 chrY 3682281 3682585 -21030494 + AluSq SINE Alu 1 308 -5 2117 108 28 0 chrY 3682738 3683025 -21030054 + AluSq SINE Alu 1 295 -18 716 224 29 6 chrY 3683983 3684157 -21028922 + MER5B DNA MER1_type 1 178 0 851 250 64 74 chrY 3684314 3684610 -21028469 + L2 LINE L2 3019 3311 -2 2448 127 6 3 chrY 3685243 3685606 -21027473 - THE1B LTR MaLR 0 364 1 9621 138 16 31 chrY 3685606 3687209 -21025870 - THE1B-int LTR MaLR 0 1580 1 411 168 2 13 chrY 3687209 3687297 -21025782 - MSTA LTR MaLR 0 428 288 2065 177 58 3 chrY 3687722 3688155 -21024924 + LTR49 LTR ERV1 1 491 -131 2614 170 40 57 chrY 3688157 3688580 -21024499 + LTR29 LTR ERV1 1 430 -223 1571 177 3 14 chrY 3688580 3688925 -21024154 - AluSx SINE Alu 0 344 3 2614 170 40 57 chrY 3688925 3688938 -21024141 + LTR29 LTR ERV1 430 442 -211 2146 136 3 12 chrY 3688938 3689284 -21023795 - L1PB3 LINE L1 -1 6153 5811 2614 170 40 57 chrY 3689284 3689484 -21023595 + LTR29 LTR ERV1 442 648 -5 990 172 47 23 chrY 3689491 3689798 -21023281 + LTR29-int LTR ERV1 1 351 -5980 12808 204 41 15 chrY 3689803 3692304 -21020775 - L1M LINE L1 -743 5403 2814 2521 124 3 0 chrY 3692304 3692667 -21020412 - THE1B LTR MaLR 0 364 1 12808 204 41 15 chrY 3692667 3693310 -21019769 - L1M LINE L1 -3332 2814 2189 1905 150 137 8 chrY 3693311 3693690 -21019389 + MSTA LTR MaLR 1 428 0 1602 161 20 10 chrY 3693693 3693985 -21019094 + MSTA-int LTR MaLR 4 298 -1282 1388 174 0 23 chrY 3693978 3694237 -21018842 + MSTA-int LTR MaLR 631 883 -697 * 447 208 20 10 chrY 3694238 3694339 -21018740 + MSTA-int LTR MaLR 1541 1642 -9 330 155 0 0 chrY 3694362 3694420 -21018659 + MSTA LTR MaLR 371 428 0 16585 203 53 11 chrY 3694420 3697875 -21015204 - L1M1 LINE L1 -3954 3611 12 11940 180 55 49 chrY 3697891 3698156 -21014923 + LTR49-int LTR ERV1 3259 3521 -2810 396 0 0 0 chrY 3698156 3698200 -21014879 + (TG)n Simple_repeat Simple_repeat 1 44 0 261 53 0 0 chrY 3698200 3698238 -21014841 - L1PB3 LINE L1 -34 6120 6083 11940 180 55 49 chrY 3698238 3700986 -21012093 + LTR49-int LTR ERV1 3520 6327 -4 3034 154 47 24 chrY 3700993 3701566 -21011513 + LTR49 LTR ERV1 3 588 -7 2171 181 26 12 chrY 3701570 3701985 -21011094 - MSTA LTR MaLR -7 421 1 1836 258 50 47 chrY 3702281 3703177 -21009902 + L1MC5 LINE L1 6632 7530 -431 282 288 22 58 chrY 3703270 3703409 -21009670 + L1ME3A LINE L1 5967 6100 -70 622 274 43 11 chrY 3703421 3703607 -21009472 + L1ME3A LINE L1 5979 6170 0 1790 167 123 26 chrY 3703920 3704310 -21008769 + MSTA LTR MaLR 1 428 0 1790 76 8 19 chrY 3704337 3704600 -21008479 + MSTA-int LTR MaLR 1315 1574 -6 1866 165 134 11 chrY 3704606 3704987 -21008092 + MSTA LTR MaLR 1 428 0 676 310 41 20 chrY 3706792 3707037 -21006042 + MIR SINE MIR 3 252 -10 541 277 48 12 chrY 3707676 3707842 -21005237 + MIR SINE MIR 91 262 0 532 239 75 99 chrY 3708704 3709076 -21004003 - LTR24B LTR ERV1 -7 569 207 9613 232 36 25 chrY 3709309 3712398 -21000681 - L1PA16 LINE L1 -8 6809 3755 957 92 0 0 chrY 3712398 3712528 -21000551 - L1PB1 LINE L1 -6 6145 6016 9613 232 36 25 chrY 3712528 3712764 -21000315 - L1PA16 LINE L1 -3062 3755 3523 180 0 0 0 chrY 3712764 3712784 -21000295 + (TA)n Simple_repeat Simple_repeat 2 21 0 9613 232 36 25 chrY 3712784 3713505 -20999574 - L1PA16 LINE L1 -3294 3523 2811 2008 118 4 0 chrY 3713505 3713777 -20999302 + AluSq SINE Alu 34 306 -7 9613 232 36 25 chrY 3713777 3714631 -20998448 - L1PA16 LINE L1 -4006 2811 1867 1823 219 57 7 chrY 3714631 3715037 -20998042 - MSTB LTR MaLR 0 426 1 7329 225 12 40 chrY 3715037 3716729 -20996350 - MSTB-int LTR MaLR 0 1651 7 1948 182 23 74 chrY 3716750 3716990 -20996089 - MSTB LTR MaLR -15 411 201 2653 94 37 15 chrY 3716990 3717394 -20995685 - L1MA1 LINE L1 0 6302 5890 1948 182 23 74 chrY 3717394 3717586 -20995493 - MSTB LTR MaLR -225 201 1 1104 241 49 175 chrY 3717586 3717992 -20995087 - L1PA16 LINE L1 -4935 1852 1500 335 303 18 18 chrY 3718695 3718804 -20994275 - MER110-int LTR ERV1 -783 6339 6231 22 0 0 0 chrY 3719905 3719927 -20993152 + AT_rich Low_complexity Low_complexity 1 22 0 276 329 66 48 chrY 3720291 3720519 -20992560 - MER110-int LTR ERV1 -2274 2373 2142 186 103 0 0 chrY 3720943 3720972 -20992107 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 281 336 24 24 chrY 3721089 3721297 -20991782 - MER110-int LTR ERV1 -3797 4938 4731 259 320 63 45 chrY 3721803 3722072 -20991007 - MER110-int LTR ERV1 -3640 3482 3209 419 336 41 0 chrY 3722338 3722484 -20990595 - MER110-int LTR ERV1 -4145 502 351 585 116 0 0 chrY 3722628 3722714 -20990365 + L1PA15 LINE L1 5513 5598 -568 5250 156 32 37 chrY 3722764 3723506 -20989573 + L1PA16 LINE L1 4576 5320 -846 1952 168 17 25 chrY 3723506 3723864 -20989215 + L1PA15 LINE L1 5811 6165 0 5250 156 32 37 chrY 3723864 3724713 -20988366 + L1PA16 LINE L1 5320 6166 0 23 0 0 0 chrY 3725325 3725348 -20987731 + AT_rich Low_complexity Low_complexity 1 23 0 262 111 0 0 chrY 3726080 3726116 -20986963 + L1 LINE L1 4882 4917 -1229 356 191 152 19 chrY 3726117 3726222 -20986857 - L1 LINE L1 -1265 4881 4763 792 248 124 0 chrY 3726560 3726762 -20986317 - AluJb SINE Alu -30 282 56 2190 108 0 10 chrY 3729243 3729549 -20983530 + AluY SINE Alu 1 303 -8 1189 244 3 7 chrY 3730812 3731095 -20981984 + AluJo SINE Alu 8 289 -23 1891 160 3 0 chrY 3731107 3731395 -20981684 + AluSx SINE Alu 6 294 -18 21 57 0 0 chrY 3733020 3733055 -20980024 + AT_rich Low_complexity Low_complexity 1 35 0 1511 177 54 0 chrY 3733108 3733385 -20979694 + AluSg SINE Alu 1 292 -18 396 82 0 0 chrY 3740532 3740593 -20972486 + (TG)n Simple_repeat Simple_repeat 2 62 0 235 188 0 47 chrY 3742878 3742942 -20970137 + CT-rich Low_complexity Low_complexity 1 61 0 794 257 27 54 chrY 3743252 3743548 -20969531 - AluJb SINE Alu -12 300 13 302 277 0 43 chrY 3743708 3743802 -20969277 + L1MC4 LINE L1 6614 6703 -1339 351 221 0 0 chrY 3743802 3743888 -20969191 + (TA)n Simple_repeat Simple_repeat 2 87 0 2170 260 55 57 chrY 3744042 3745762 -20967317 - L1MA8 LINE L1 -23 6268 4559 222 253 48 103 chrY 3749182 3749283 -20963796 + L2 LINE L2 2321 2413 -901 1576 207 3 7 chrY 3749283 3749588 -20963491 + AluSx SINE Alu 1 304 -8 222 253 48 103 chrY 3749588 3749632 -20963447 + L2 LINE L2 2413 2458 -856 1457 156 59 42 chrY 3749633 3749940 -20963139 + AluSx SINE Alu 1 312 0 2353 130 6 0 chrY 3750046 3750399 -20962680 - THE1A LTR MaLR 0 355 1 352 193 26 26 chrY 3751167 3751281 -20961798 + (TA)n Simple_repeat Simple_repeat 1 114 0 443 329 159 13 chrY 3751295 3751766 -20961313 - L1M4 LINE L1 -2743 3639 3100 476 195 12 0 chrY 3751842 3751924 -20961155 + AluSg/x SINE Alu 190 272 -38 288 0 0 0 chrY 3751931 3751963 -20961116 + (CAAAA)n Simple_repeat Simple_repeat 1 32 0 431 215 8 46 chrY 3753517 3753621 -20959458 + AluSg/x SINE Alu 185 285 -27 327 25 0 0 chrY 3753621 3753661 -20959418 + (CA)n Simple_repeat Simple_repeat 2 41 0 431 215 8 46 chrY 3753661 3753686 -20959393 + AluSg/x SINE Alu 285 309 -3 348 24 0 0 chrY 3753728 3753769 -20959310 + (CA)n Simple_repeat Simple_repeat 2 42 0 198 0 0 0 chrY 3757086 3757108 -20955971 + (CAGCC)n Simple_repeat Simple_repeat 1 22 0 222 117 0 50 chrY 3760981 3761041 -20952038 + (TTCC)n Simple_repeat Simple_repeat 1 57 0 210 91 0 0 chrY 3761252 3761285 -20951794 + (A)n Simple_repeat Simple_repeat 1 33 0 308 313 117 50 chrY 3761823 3762018 -20951061 - L1M4 LINE L1 -5019 1365 1142 876 238 30 34 chrY 3762018 3762316 -20950763 - AluJo SINE Alu -4 298 2 308 313 117 50 chrY 3762316 3762420 -20950659 - L1M4 LINE L1 -5242 1142 1046 306 0 0 0 chrY 3762458 3762492 -20950587 + (TG)n Simple_repeat Simple_repeat 2 35 0 2927 252 52 41 chrY 3762628 3763472 -20949607 - L1MA8 LINE L1 0 6291 5459 207 0 0 0 chrY 3763472 3763495 -20949584 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2927 252 52 41 chrY 3763495 3764370 -20948709 - L1MA8 LINE L1 -832 5459 4559 28 48 0 0 chrY 3766687 3766729 -20946350 + AT_rich Low_complexity Low_complexity 1 42 0 1724 205 0 0 chrY 3767920 3768222 -20944857 + AluSx SINE Alu 1 302 -10 1548 137 68 30 chrY 3768259 3768522 -20944557 + AluSx SINE Alu 1 273 -39 2591 119 6 0 chrY 3768664 3769017 -20944062 - THE1A LTR MaLR 0 355 1 309 266 49 49 chrY 3769506 3769649 -20943430 - L1MA8 LINE L1 -2410 3736 3594 348 212 26 0 chrY 3769789 3769902 -20943177 + (TA)n Simple_repeat Simple_repeat 1 116 0 268 312 153 11 chrY 3769913 3770390 -20942689 - L1M4 LINE L1 -2742 3404 2860 * 1678 295 43 33 chrY 3770383 3770914 -20942165 - HAL1 LINE L1 -462 2045 1502 2058 112 3 62 chrY 3770914 3771235 -20941844 - AluSp SINE Alu -11 302 1 1678 295 43 33 chrY 3771235 3771524 -20941555 - HAL1 LINE L1 -1005 1502 1217 196 250 132 26 chrY 3771803 3771879 -20941200 - L2 LINE L2 -50 3222 3139 1658 144 33 49 chrY 3771920 3772225 -20940854 + AluY SINE Alu 12 311 0 282 314 21 69 chrY 3772506 3772694 -20940385 - L2 LINE L2 -263 3009 2831 1555 182 10 27 chrY 3772695 3772992 -20940087 + AluSq SINE Alu 1 292 -21 1163 150 5 0 chrY 3772997 3773184 -20939895 + AluSp SINE Alu 123 310 -3 306 0 0 0 chrY 3773339 3773373 -20939706 + (CA)n Simple_repeat Simple_repeat 2 35 0 273 210 0 0 chrY 3773402 3773464 -20939615 + (TA)n Simple_repeat Simple_repeat 2 63 0 229 65 0 0 chrY 3773470 3773516 -20939563 + LTR66 LTR ERVL 394 439 -171 213 94 0 0 chrY 3773538 3773570 -20939509 + (CA)n Simple_repeat Simple_repeat 1 32 0 218 320 112 8 chrY 3774070 3774195 -20938884 - L2 LINE L2 -4 3309 3172 358 302 7 60 chrY 3774734 3774883 -20938196 - L2 LINE L2 -2 3311 3171 423 333 124 13 chrY 3775108 3775480 -20937599 - L2 LINE L2 -1310 2004 1592 24 32 0 0 chrY 3775840 3775871 -20937208 + AT_rich Low_complexity Low_complexity 1 31 0 183 311 16 0 chrY 3777247 3777308 -20935771 + L2 LINE L2 3246 3307 -6 851 256 49 67 chrY 3777819 3778163 -20934916 + MER93b LTR ERV1 34 371 -2 724 229 122 88 chrY 3778191 3778561 -20934518 + Charlie2 DNA MER1_type 1861 2252 -610 264 59 0 0 chrY 3778568 3778602 -20934477 + (TG)n Simple_repeat Simple_repeat 1 34 0 2034 124 7 7 chrY 3778602 3778884 -20934195 - AluSp SINE Alu -28 285 1 724 229 122 88 chrY 3778884 3778988 -20934091 + Charlie2 DNA MER1_type 2252 2351 -511 7822 36 2 0 chrY 3780182 3781348 -20931731 - L1PA4 LINE L1 -5 6150 4980 1157 23 0 0 chrY 3781348 3781477 -20931602 - AluYa5/8 SINE Alu -17 294 166 37742 70 15 1 chrY 3781477 3786395 -20926684 - L1PA4 LINE L1 -1156 4990 1 524 272 193 23 chrY 3786721 3787022 -20926057 - L2 LINE L2 -1177 2137 1786 887 218 38 85 chrY 3787022 3787190 -20925889 - AluSg SINE Alu 0 310 162 9374 56 2 0 chrY 3787190 3789095 -20923984 + L1PA4 LINE L1 4244 6154 -1 887 218 38 85 chrY 3789095 3789243 -20923836 - AluSg SINE Alu -148 162 9 752 327 80 35 chrY 3789247 3789844 -20923235 - L2 LINE L2 -1518 1796 1173 321 47 0 0 chrY 3790486 3790529 -20922550 + (TG)n Simple_repeat Simple_repeat 1 43 0 813 287 10 0 chrY 3790615 3790810 -20922269 + MIR SINE MIR 1 197 -65 220 296 99 0 chrY 3790810 3790891 -20922188 + MIR SINE MIR 52 140 -122 21 36 0 0 chrY 3791809 3791837 -20921242 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chrY 3792950 3792971 -20920108 + AT_rich Low_complexity Low_complexity 1 21 0 514 225 0 42 chrY 3793801 3793921 -20919158 + MER41E LTR ERV1 1 115 -397 1999 167 55 93 chrY 3794290 3794895 -20918184 - LTR1 LTR ERV1 -91 694 113 1222 164 22 13 chrY 3794873 3795104 -20917975 - LTR1 LTR ERV1 -552 233 1 * 246 295 74 11 chrY 3795237 3795332 -20917747 - LTR33A LTR ERVL -301 222 122 1732 183 0 3 chrY 3800933 3800949 -20912130 - AluSx SINE Alu -10 302 287 423 0 0 0 chrY 3800949 3800996 -20912083 + (TG)n Simple_repeat Simple_repeat 2 48 0 1732 183 0 3 chrY 3800996 3801280 -20911799 - AluSx SINE Alu -25 287 3 1778 171 20 0 chrY 3803060 3803353 -20909726 - AluSx SINE Alu -8 304 6 1093 264 40 0 chrY 3803364 3803522 -20909557 - AluJo SINE Alu -21 291 116 207 0 0 0 chrY 3803522 3803545 -20909534 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1093 264 40 0 chrY 3803545 3803659 -20909420 - AluJo SINE Alu -196 116 8 901 249 124 0 chrY 3806442 3806643 -20906436 + AluJb SINE Alu 57 282 -30 360 0 0 0 chrY 3806680 3806720 -20906359 + (CA)n Simple_repeat Simple_repeat 1 40 0 21 0 0 0 chrY 3807027 3807048 -20906031 + AT_rich Low_complexity Low_complexity 1 21 0 28 48 0 0 chrY 3807174 3807216 -20905863 + AT_rich Low_complexity Low_complexity 1 42 0 286 232 61 12 chrY 3815200 3815364 -20897715 + (TA)n Simple_repeat Simple_repeat 2 173 0 10579 134 11 11 chrY 3815811 3817716 -20895363 + L1PA7 LINE L1 2705 4608 -1538 5897 112 9 1 chrY 3817729 3818641 -20894438 + L1PA7 LINE L1 5232 6150 -4 250 219 29 29 chrY 3818641 3818746 -20894333 + (TA)n Simple_repeat Simple_repeat 2 106 0 283 392 17 0 chrY 3819302 3819422 -20893657 + L2 LINE L2 2921 3042 -271 17331 49 4 0 chrY 3819962 3822922 -20890157 - L1PA3 LINE L1 0 6155 3188 13298 47 1 0 chrY 3822924 3824681 -20888398 + L1PA3 LINE L1 1427 3185 -2961 289 275 35 0 chrY 3825186 3825357 -20887722 + (TA)n Simple_repeat Simple_repeat 1 177 0 213 198 28 0 chrY 3825490 3825596 -20887483 + (TA)n Simple_repeat Simple_repeat 1 109 0 17470 40 1 0 chrY 3825596 3828517 -20884562 + L1PA3 LINE L1 3213 6144 -11 522 146 35 0 chrY 3828524 3828695 -20884384 + (TA)n Simple_repeat Simple_repeat 1 177 0 32 26 0 0 chrY 3828700 3828739 -20884340 + AT_rich Low_complexity Low_complexity 1 39 0 480 197 13 6 chrY 3828739 3829048 -20884031 + (TA)n Simple_repeat Simple_repeat 1 311 0 306 193 11 23 chrY 3829059 3829235 -20883844 + (TA)n Simple_repeat Simple_repeat 2 175 0 724 239 0 0 chrY 3829237 3829392 -20883687 + AluSg/x SINE Alu 141 295 -17 27 29 0 0 chrY 3829663 3829697 -20883382 + AT_rich Low_complexity Low_complexity 1 34 0 821 294 28 21 chrY 3830806 3831092 -20881987 - AluJo SINE Alu -14 288 1 21 0 0 0 chrY 3831206 3831227 -20881852 + AT_rich Low_complexity Low_complexity 1 21 0 183 80 0 0 chrY 3832505 3832530 -20880549 + (A)n Simple_repeat Simple_repeat 1 25 0 839 257 70 15 chrY 3832554 3832881 -20880198 - L1MB5 LINE L1 -13 6161 5817 651 207 168 0 chrY 3832906 3833114 -20879965 - L1MB5 LINE L1 -428 5746 5504 323 175 210 21 chrY 3833124 3833267 -20879812 - L1MB5 LINE L1 -755 5423 5254 569 237 38 34 chrY 3833471 3833707 -20879372 - L1M3 LINE L1 -631 5549 5313 22 35 0 0 chrY 3834138 3834167 -20878912 + AT_rich Low_complexity Low_complexity 1 29 0 1193 205 4 17 chrY 3835465 3835699 -20877380 + AluSx SINE Alu 56 286 -26 281 251 35 34 chrY 3835708 3835757 -20877322 - L1MA1 LINE L1 -78 6224 6177 1375 232 0 29 chrY 3835757 3836067 -20877012 - AluJo SINE Alu -10 302 2 281 251 35 34 chrY 3836067 3836240 -20876839 - L1MA1 LINE L1 -125 6177 6000 2061 152 3 0 chrY 3836888 3837191 -20875888 - AluSx SINE Alu -8 304 1 1321 138 5 0 chrY 3837242 3837458 -20875621 - AluSp SINE Alu 0 312 96 1142 229 3 50 chrY 3837754 3838051 -20875028 + AluSx SINE Alu 3 285 -17 30 27 0 0 chrY 3838051 3838088 -20874991 + AT_rich Low_complexity Low_complexity 1 37 0 1032 292 10 17 chrY 3838116 3838414 -20874665 - AluJo SINE Alu -5 297 2 2680 129 197 69 chrY 3838418 3839028 -20874051 - LTR12 LTR ERV1 0 688 1 3629 148 8 2 chrY 3839035 3839649 -20873430 - HERV9 LTR ERV1 -25 8374 7757 1887 201 99 62 chrY 3839644 3840494 -20872585 - Harlequin LTR ERV1 -5176 1720 840 * 5050 146 3 11 chrY 3840495 3841367 -20871712 - Harlequin LTR ERV1 -3455 4944 4080 12221 140 16 15 chrY 3841374 3844422 -20868657 - Harlequin LTR ERV1 -5260 3139 4 1962 115 140 183 chrY 3844424 3845032 -20868047 - LTR12 LTR ERV1 -132 582 1 1734 185 30 3 chrY 3845185 3845483 -20867596 - AluSx SINE Alu -6 306 1 1248 213 89 55 chrY 3845824 3846227 -20866852 + MSTB LTR MaLR 6 422 -4 1662 189 0 30 chrY 3846433 3846734 -20866345 - AluY SINE Alu -18 293 2 746 334 42 25 chrY 3846842 3847291 -20865788 + L1 LINE L1 54 510 -5771 305 225 9 72 chrY 3848134 3848245 -20864834 + L1 LINE L1 3667 3770 -2580 340 318 105 7 chrY 3848565 3848717 -20864362 + AluJ/FLAM SINE Alu 1 87 -215 32 26 0 0 chrY 3849258 3849297 -20863782 + AT_rich Low_complexity Low_complexity 1 39 0 1172 82 6 0 chrY 3849401 3849571 -20863508 + (TTTC)n Simple_repeat Simple_repeat 1 171 0 1298 227 0 31 chrY 3849597 3849888 -20863191 - AluSx SINE Alu -26 286 5 1216 254 3 3 chrY 3849932 3850243 -20862836 - AluSx SINE Alu -1 311 1 261 278 56 24 chrY 3850710 3850836 -20862243 - MLT1F LTR MaLR -27 515 386 275 108 14 40 chrY 3851665 3851739 -20861340 + (TA)n Simple_repeat Simple_repeat 1 72 0 24 0 0 0 chrY 3852006 3852030 -20861049 + AT_rich Low_complexity Low_complexity 1 24 0 24 32 0 0 chrY 3852217 3852248 -20860831 + AT_rich Low_complexity Low_complexity 1 31 0 369 86 0 0 chrY 3854709 3854767 -20858312 + (CA)n Simple_repeat Simple_repeat 1 58 0 262 293 90 18 chrY 3854791 3854958 -20858121 - SST1 Satellite centromeric -11 1552 1374 271 77 15 62 chrY 3857190 3857255 -20855824 + (CA)n Simple_repeat Simple_repeat 1 62 0 234 0 0 0 chrY 3859438 3859464 -20853615 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 243 247 25 0 chrY 3859673 3859754 -20853325 + (CA)n Simple_repeat Simple_repeat 1 83 0 208 184 20 20 chrY 3862124 3862173 -20850906 + (CA)n Simple_repeat Simple_repeat 2 50 0 225 164 33 16 chrY 3864576 3864637 -20848442 + (CA)n Simple_repeat Simple_repeat 1 62 0 231 299 115 19 chrY 3864658 3864815 -20848264 - SST1 Satellite centromeric -4 1559 1388 23 0 0 0 chrY 3866159 3866182 -20846897 + AT_rich Low_complexity Low_complexity 1 23 0 225 250 0 0 chrY 3866691 3866751 -20846328 + (CA)n Simple_repeat Simple_repeat 1 60 0 229 286 13 13 chrY 3867084 3867161 -20845918 - SST1 Satellite centromeric -324 1239 1163 254 60 0 80 chrY 3867922 3867972 -20845107 + (CA)n Simple_repeat Simple_repeat 2 47 0 22 0 0 0 chrY 3869878 3869900 -20843179 + AT_rich Low_complexity Low_complexity 1 22 0 3644 68 2 4 chrY 3870180 3870515 -20842564 - L1PA3 LINE L1 0 6155 5820 2296 82 0 10 chrY 3870515 3870808 -20842271 - AluY SINE Alu -13 298 9 3644 68 2 4 chrY 3870808 3870943 -20842136 - L1PA3 LINE L1 -335 5820 5686 2154 32 0 0 chrY 3870943 3871220 -20841859 + L1P LINE L1 4979 5255 -891 200 189 40 14 chrY 3871453 3871527 -20841552 + (CA)n Simple_repeat Simple_repeat 2 77 0 216 158 0 0 chrY 3873703 3873741 -20839338 + T-rich Low_complexity Low_complexity 1 38 0 233 100 0 67 chrY 3873946 3874006 -20839073 + (CA)n Simple_repeat Simple_repeat 1 56 0 182 279 139 0 chrY 3875044 3875123 -20837956 + L3 LINE CR1 1397 1486 -91 9429 182 32 21 chrY 3877028 3879336 -20833743 + Harlequin LTR ERV1 1684 4094 -3719 3665 215 11 4 chrY 3879335 3880828 -20832251 + Harlequin LTR ERV1 4386 5999 -1814 * 577 285 0 0 chrY 3880836 3880959 -20832120 + Harlequin LTR ERV1 5467 5589 -1307 * 737 210 156 0 chrY 3880954 3881121 -20831958 + Harlequin LTR ERV1 6703 6895 -1 921 256 3 36 chrY 3881121 3881482 -20831597 + LTR2 LTR ERV1 1 449 0 231 61 0 0 chrY 3883768 3883801 -20829278 + (CA)n Simple_repeat Simple_repeat 2 34 0 238 330 0 0 chrY 3884160 3884254 -20828825 - SST1 Satellite centromeric -324 1239 1146 198 0 0 0 chrY 3886106 3886128 -20826951 + (CA)n Simple_repeat Simple_repeat 1 22 0 180 77 0 0 chrY 3888500 3888526 -20824553 + (CA)n Simple_repeat Simple_repeat 1 26 0 202 146 18 18 chrY 3888643 3888698 -20824381 + (CA)n Simple_repeat Simple_repeat 2 56 0 299 328 48 40 chrY 3889605 3889980 -20823099 - SST1 Satellite centromeric -963 600 223 183 80 0 0 chrY 3891164 3891189 -20821890 + (A)n Simple_repeat Simple_repeat 1 25 0 309 328 58 31 chrY 3893255 3893777 -20819302 - SST1 Satellite centromeric -962 601 66 444 298 63 54 chrY 3895824 3896287 -20816792 - SST1 Satellite centromeric -965 598 132 252 154 0 0 chrY 3897320 3897372 -20815707 + (CA)n Simple_repeat Simple_repeat 1 52 0 2094 143 0 0 chrY 3898835 3899135 -20813944 + AluY SINE Alu 1 300 -11 284 268 14 0 chrY 3903734 3903805 -20809274 - SST1 Satellite centromeric -336 1227 1156 237 298 32 40 chrY 3904617 3904741 -20808338 - SST1 Satellite centromeric -1303 260 138 207 114 0 0 chrY 3905778 3905813 -20807266 + (CA)n Simple_repeat Simple_repeat 2 36 0 234 272 47 70 chrY 3906672 3906885 -20806194 - SST1 Satellite centromeric -1039 524 317 268 234 21 0 chrY 3908113 3908207 -20804872 + (CA)n Simple_repeat Simple_repeat 1 96 0 225 83 0 0 chrY 3910431 3910467 -20802612 + (CA)n Simple_repeat Simple_repeat 1 36 0 281 319 55 40 chrY 3911458 3911787 -20801292 - SST1 Satellite centromeric -1039 524 191 250 244 22 0 chrY 3912894 3912984 -20800095 + (CA)n Simple_repeat Simple_repeat 1 92 0 234 143 0 0 chrY 3914574 3914623 -20798456 + (CA)n Simple_repeat Simple_repeat 2 50 0 340 314 64 54 chrY 3915540 3915932 -20797147 - SST1 Satellite centromeric -961 602 207 258 95 0 0 chrY 3916803 3916845 -20796234 + (T)n Simple_repeat Simple_repeat 1 42 0 381 306 50 71 chrY 3918053 3918435 -20794644 - SST1 Satellite centromeric -963 600 227 183 114 0 0 chrY 3919290 3919325 -20793754 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 196 161 32 0 chrY 3919532 3919594 -20793485 + (CA)n Simple_repeat Simple_repeat 1 64 0 267 307 93 85 chrY 3919633 3920011 -20793068 - SST1 Satellite centromeric -27 1536 1156 294 87 0 0 chrY 3921941 3921987 -20791092 + (CA)n Simple_repeat Simple_repeat 1 46 0 17734 46 3 1 chrY 3922149 3925107 -20787972 - L1PA4 LINE L1 -1 6154 3189 1542 40 0 0 chrY 3925107 3925308 -20787771 + L1PA4 LINE L1 2984 3184 -2962 180 179 0 0 chrY 3926850 3926889 -20786190 + (CA)n Simple_repeat Simple_repeat 1 39 0 231 284 14 14 chrY 3927266 3927340 -20785739 - SST1 Satellite centromeric -334 1229 1156 262 282 32 40 chrY 3928123 3928247 -20784832 - SST1 Satellite centromeric -1303 260 138 203 111 0 74 chrY 3929288 3929342 -20783737 + (CA)n Simple_repeat Simple_repeat 1 50 0 195 42 0 0 chrY 3929511 3929535 -20783544 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 227 338 0 0 chrY 3932277 3932354 -20780725 - SST1 Satellite centromeric -339 1224 1148 318 26 0 0 chrY 3934321 3934360 -20778719 + (CA)n Simple_repeat Simple_repeat 1 39 0 246 355 51 38 chrY 3935289 3935818 -20777261 - SST1 Satellite centromeric -962 601 66 234 107 27 53 chrY 3936764 3936839 -20776240 + (CA)n Simple_repeat Simple_repeat 1 73 0 374 296 68 52 chrY 3937704 3937954 -20775125 - SST1 Satellite centromeric -961 602 349 186 71 0 0 chrY 3938442 3938470 -20774609 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 285 214 20 10 chrY 3938694 3938792 -20774287 + (CA)n Simple_repeat Simple_repeat 2 100 0 263 319 60 57 chrY 3939636 3939884 -20773195 - SST1 Satellite centromeric -963 600 352 232 303 92 60 chrY 3941160 3941411 -20771668 - SST1 Satellite centromeric -1167 396 138 247 250 22 0 chrY 3942459 3942551 -20770528 + (CA)n Simple_repeat Simple_repeat 1 94 0 277 283 97 48 chrY 3942554 3942699 -20770380 - SST1 Satellite centromeric -25 1538 1387 230 287 85 60 chrY 3943537 3943854 -20769225 - SST1 Satellite centromeric -1102 461 137 542 306 66 46 chrY 3945809 3946263 -20766816 - SST1 Satellite centromeric -963 600 138 362 295 80 66 chrY 3948151 3948663 -20764416 - SST1 Satellite centromeric -962 601 83 180 97 0 0 chrY 3949677 3949708 -20763371 + (CA)n Simple_repeat Simple_repeat 2 32 0 245 290 103 19 chrY 3949732 3949887 -20763192 - SST1 Satellite centromeric -11 1552 1385 289 292 78 41 chrY 3950916 3951159 -20761920 - SST1 Satellite centromeric -1283 280 29 195 42 0 0 chrY 3951531 3951555 -20761524 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 195 42 0 0 chrY 3951626 3951650 -20761429 + (GAAA)n Simple_repeat Simple_repeat 2 25 0 222 62 0 0 chrY 3951773 3951805 -20761274 + (CA)n Simple_repeat Simple_repeat 1 32 0 6426 26 0 0 chrY 3951971 3952707 -20760372 + L1PA2 LINE L1 5412 6147 -8 26 50 0 0 chrY 3952772 3952812 -20760267 + AT_rich Low_complexity Low_complexity 1 40 0 339 149 0 0 chrY 3953654 3953728 -20759351 + (CA)n Simple_repeat Simple_repeat 1 74 0 310 309 77 77 chrY 3953752 3954157 -20758922 - SST1 Satellite centromeric -11 1552 1148 283 317 50 50 chrY 3954635 3955033 -20758046 - SST1 Satellite centromeric -959 604 207 185 83 28 0 chrY 3956122 3956158 -20756921 + (CA)n Simple_repeat Simple_repeat 1 37 0 342 276 58 46 chrY 3957168 3957342 -20755737 - SST1 Satellite centromeric -1039 524 349 388 300 74 74 chrY 3960083 3960473 -20752606 - SST1 Satellite centromeric -11 1552 1163 403 325 55 46 chrY 3961281 3961740 -20751339 - SST1 Satellite centromeric -962 601 139 28 0 0 0 chrY 3962290 3962318 -20750761 + AT_rich Low_complexity Low_complexity 1 28 0 273 29 0 0 chrY 3962582 3962616 -20750463 + (CA)n Simple_repeat Simple_repeat 2 35 0 508 304 66 33 chrY 3963339 3963734 -20749345 - SST1 Satellite centromeric -1039 524 117 180 167 0 0 chrY 3964764 3964812 -20748267 + (CA)n Simple_repeat Simple_repeat 1 48 0 243 315 83 79 chrY 3965713 3966218 -20746861 - SST1 Satellite centromeric -963 600 94 2111 192 35 53 chrY 3967107 3967711 -20745368 - LTR1 LTR ERV1 -104 681 89 596 165 8 25 chrY 3967716 3967837 -20745242 - LTR1 LTR ERV1 -666 119 1 23 33 0 0 chrY 3968834 3968864 -20744215 + AT_rich Low_complexity Low_complexity 1 30 0 283 298 12 0 chrY 3969015 3969099 -20743980 - FRAM SINE Alu -13 153 69 436 54 0 27 chrY 3969550 3969624 -20743455 + (TA)n Simple_repeat Simple_repeat 1 72 0 292 235 0 20 chrY 3969731 3969833 -20743246 + (TA)n Simple_repeat Simple_repeat 2 101 0 1160 258 3 3 chrY 3970482 3970765 -20742314 + AluSx SINE Alu 1 283 -19 1392 224 0 14 chrY 3970823 3971113 -20741966 + AluSx SINE Alu 1 286 -16 1349 51 11 0 chrY 3971137 3971154 -20741925 + (GAAA)n Simple_repeat Simple_repeat 1 196 0 1349 51 11 0 chrY 3971154 3971331 -20741748 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 404 242 7 111 chrY 3972114 3972267 -20740812 - FLAM_C SINE Alu -6 137 1 238 325 8 26 chrY 3972384 3972501 -20740578 + MLT1E LTR MaLR 361 475 -118 207 0 0 0 chrY 3972510 3972533 -20740546 + (TG)n Simple_repeat Simple_repeat 2 24 0 498 352 60 33 chrY 3973543 3973995 -20739084 - L1M3b LINE L1 -5771 510 47 1618 205 0 22 chrY 3974074 3974386 -20738693 + AluY SINE Alu 2 306 -5 1146 234 54 56 chrY 3974591 3975018 -20738061 - MSTB1 LTR MaLR -6 426 1 244 332 18 73 chrY 3975291 3975352 -20737727 - L1M3de LINE L1 -5977 676 613 1971 151 3 3 chrY 3975352 3975656 -20737423 + AluSx SINE Alu 1 304 -8 244 332 18 73 chrY 3975656 3975814 -20737265 - L1M3de LINE L1 -6040 613 469 18756 124 44 43 chrY 3975814 3979396 -20733683 + HERV17 LTR ERV1 6 3139 -236 5359 128 6 10 chrY 3979403 3980272 -20732807 + HERV17 LTR ERV1 4080 4944 -3455 1586 187 59 57 chrY 3980273 3981282 -20731797 + HERV17 LTR ERV1 706 1720 -5176 * 3302 138 74 2 chrY 3981278 3981857 -20731222 + HERV17 LTR ERV1 7758 8378 -21 3190 143 283 0 chrY 3981860 3982282 -20730797 + LTR12 LTR ERV1 1 303 -523 2868 10 0 0 chrY 3982282 3982593 -20730486 + AluY SINE Alu 1 311 0 3190 143 283 0 chrY 3982593 3982814 -20730265 + LTR12 LTR ERV1 303 826 0 1095 269 3 29 chrY 3982818 3983127 -20729952 + AluJo SINE Alu 2 302 0 1217 254 3 17 chrY 3983177 3983465 -20729614 - AluSx SINE Alu -16 286 3 1422 129 5 0 chrY 3983767 3983969 -20729110 + AluSp SINE Alu 102 304 -9 648 141 0 0 chrY 3984025 3984124 -20728955 + AluS SINE Alu 1 99 -214 366 277 39 0 chrY 3984137 3984291 -20728788 + L1MA4 LINE L1 6013 6176 -124 580 264 34 34 chrY 3984292 3984470 -20728609 + AluJb SINE Alu 2 179 -133 27 0 0 0 chrY 3985756 3985783 -20727296 + AT_rich Low_complexity Low_complexity 1 27 0 835 286 19 19 chrY 3985891 3986150 -20726929 + AluJo SINE Alu 2 260 -52 25 0 0 0 chrY 3986674 3986699 -20726380 + AT_rich Low_complexity Low_complexity 1 25 0 1424 227 0 3 chrY 3986981 3987280 -20725799 - AluSg SINE Alu -12 298 1 353 81 16 0 chrY 3987286 3987348 -20725731 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 21 36 0 0 chrY 3987360 3987388 -20725691 + AT_rich Low_complexity Low_complexity 1 28 0 7115 50 0 0 chrY 3988414 3989887 -20723192 - L1PA4 LINE L1 -1 6154 4687 2933 41 18 0 chrY 3989887 3990281 -20722798 + L1PA4 LINE L1 4301 4701 -1445 189 394 21 0 chrY 3990307 3990401 -20722678 - L2 LINE L2 -290 3023 2928 180 269 39 0 chrY 3990574 3990626 -20722453 - L2 LINE L2 -713 2601 2548 272 251 55 6 chrY 3990927 3991090 -20721989 + (TA)n Simple_repeat Simple_repeat 1 171 0 6013 101 6 6 chrY 3991090 3992004 -20721075 - L1PA7 LINE L1 -4 6150 5231 9641 142 45 9 chrY 3992016 3993853 -20719226 - L1PA7 LINE L1 -1538 4608 2706 31 0 0 0 chrY 3994158 3994189 -20718890 + AT_rich Low_complexity Low_complexity 1 31 0 230 257 68 0 chrY 3994216 3994364 -20718715 + (TA)n Simple_repeat Simple_repeat 2 159 0 5909 101 15 26 chrY 3997396 3998357 -20714722 - MER11C LTR ERVK 0 1071 122 6294 27 7 0 chrY 3998357 3999095 -20713984 + L1PA2 LINE L1 5409 6151 -4 30 45 0 0 chrY 3999095 3999139 -20713940 + AT_rich Low_complexity Low_complexity 1 44 0 1014 72 20 3 chrY 3999184 3999338 -20713741 - MER11B LTR ERVK -1006 260 1 239 286 6 57 chrY 4003966 4004141 -20708938 + CT-rich Low_complexity Low_complexity 1 166 0 33 43 0 0 chrY 4004762 4004809 -20708270 + AT_rich Low_complexity Low_complexity 1 47 0 375 23 0 0 chrY 4005257 4005301 -20707778 + (TG)n Simple_repeat Simple_repeat 1 44 0 782 255 68 0 chrY 4005326 4005518 -20707561 - AluJb SINE Alu -30 282 78 4115 86 2 9 chrY 4007605 4008178 -20704901 - L1PA5 LINE L1 0 6154 5586 1731 95 8 8 chrY 4008178 4008487 -20704592 + L1PA5 LINE L1 5337 5574 -580 1149 248 3 18 chrY 4009171 4009457 -20703622 + AluJo SINE Alu 8 289 -23 1670 170 21 18 chrY 4009469 4009752 -20703327 + AluSx SINE Alu 9 292 -20 25 90 0 0 chrY 4014238 4014305 -20698774 + AT_rich Low_complexity Low_complexity 1 67 0 3403 180 37 20 chrY 4015261 4016049 -20697030 - L1PA16 LINE L1 -9 6157 5357 13185 40 1 0 chrY 4016063 4017744 -20695335 - L1PA4 LINE L1 -918 5228 3547 7261 39 9 0 chrY 4017736 4018668 -20694411 + L1PA4 LINE L1 5215 6154 -1 22 0 0 0 chrY 4018847 4018869 -20694210 + AT_rich Low_complexity Low_complexity 1 22 0 34 24 0 0 chrY 4019147 4019188 -20693891 + AT_rich Low_complexity Low_complexity 1 41 0 290 285 40 64 chrY 4021248 4021528 -20691551 - L1M3 LINE L1 -642 5529 5257 193 324 27 27 chrY 4021878 4021952 -20691127 + MER5A DNA MER1_type 43 116 -73 423 0 0 0 chrY 4022035 4022105 -20690974 + (CA)n Simple_repeat Simple_repeat 1 117 0 423 0 0 0 chrY 4022105 4022152 -20690927 + (CA)n Simple_repeat Simple_repeat 2 48 0 412 313 121 29 chrY 4023253 4023534 -20689545 - L2 LINE L2 -812 2502 2196 278 266 23 0 chrY 4029236 4029364 -20683715 + (TA)n Simple_repeat Simple_repeat 1 131 0 21 0 0 0 chrY 4029781 4029802 -20683277 + AT_rich Low_complexity Low_complexity 1 21 0 205 343 37 19 chrY 4029821 4029929 -20683150 - MIR3 SINE MIR -89 119 10 226 300 82 18 chrY 4030900 4031010 -20682069 + MER117 DNA MER1_type 1 117 -80 264 262 287 8 chrY 4031228 4031350 -20681729 - MIR SINE MIR -7 255 100 949 142 5 63 chrY 4032973 4033136 -20679943 + MER34 LTR ERV1 11 163 -379 2525 118 6 3 chrY 4033136 4033499 -20679580 + THE1B LTR MaLR 1 364 0 949 142 5 63 chrY 4033499 4033525 -20679554 + MER34 LTR ERV1 163 189 -353 730 251 50 82 chrY 4033659 4033978 -20679101 + L2 LINE L2 3005 3313 0 2013 112 7 4 chrY 4034136 4034414 -20678665 + AluSx SINE Alu 3 281 -31 458 17 0 17 chrY 4034417 4034477 -20678602 + (TAAA)n Simple_repeat Simple_repeat 2 60 0 22 70 0 0 chrY 4034684 4034727 -20678352 + AT_rich Low_complexity Low_complexity 1 43 0 374 285 81 41 chrY 4034921 4035167 -20677912 - L1MC/D LINE L1 -844 5515 5260 709 278 17 0 chrY 4035422 4035602 -20677477 + MER5A DNA MER1_type 2 184 -5 1852 200 28 16 chrY 4035721 4036169 -20676910 + MER89 LTR ERV1 6 559 0 1714 92 103 22 chrY 4037323 4037596 -20675483 - AluY SINE Alu -16 295 1 279 286 42 74 chrY 4037727 4037916 -20675163 + MLT1K LTR MaLR 403 585 -3 259 270 16 0 chrY 4038318 4038388 -20674691 + (TATATG)n Simple_repeat Simple_repeat 1 71 0 280 161 36 0 chrY 4038704 4038760 -20674319 + Alu SINE Alu 245 302 0 27 0 0 0 chrY 4038793 4038820 -20674259 + AT_rich Low_complexity Low_complexity 1 27 0 1348 271 31 29 chrY 4038853 4039306 -20673773 + MER31B LTR ERV1 13 466 0 245 222 16 0 chrY 4039318 4039381 -20673698 - L1ME1 LINE L1 -86 6080 6017 25 31 0 0 chrY 4039394 4039426 -20673653 + AT_rich Low_complexity Low_complexity 1 32 0 28 29 0 0 chrY 4040832 4040867 -20672212 + AT_rich Low_complexity Low_complexity 1 35 0 2290 103 3 0 chrY 4041452 4041762 -20671317 - AluY SINE Alu 0 311 1 348 64 0 0 chrY 4042514 4042561 -20670518 + (TG)n Simple_repeat Simple_repeat 2 48 0 2083 105 3 7 chrY 4042631 4042926 -20670153 + AluSq SINE Alu 1 294 -19 193 325 48 36 chrY 4043038 4043121 -20669958 + L2 LINE L2 3189 3272 0 191 284 40 14 chrY 4043198 4043272 -20669807 - MIR3 SINE MIR -3 205 130 2177 178 31 5 chrY 4043273 4043694 -20669385 + MSTB1 LTR MaLR 1 432 0 461 250 56 19 chrY 4044342 4044502 -20668577 - HAL1 LINE L1 -131 2376 2211 528 310 6 6 chrY 4044551 4044709 -20668370 + LTR16B LTR ERVL 2 159 -305 331 293 12 0 chrY 4044713 4044795 -20668284 - Charlie1 DNA MER1_type -2678 83 1 241 94 0 0 chrY 4044875 4044907 -20668172 - Tigger1 DNA MER2_type 0 2418 2387 * 550 171 0 18 chrY 4044905 4045016 -20668063 + MSTB1 LTR MaLR 172 280 -152 * 12863 168 25 11 chrY 4045015 4047327 -20665752 - Tigger1 DNA MER2_type -30 2388 45 8485 260 33 48 chrY 4047334 4050530 -20662549 + L1PB3 LINE L1 10 3145 -3703 669 237 162 13 chrY 4050544 4050852 -20662227 - L1 LINE L1 -2988 3158 2805 6043 220 62 14 chrY 4050853 4053907 -20659172 + L1PB3 LINE L1 3149 6516 -340 342 0 0 0 chrY 4053907 4053945 -20659134 + (TA)n Simple_repeat Simple_repeat 1 38 0 6043 220 62 14 chrY 4053945 4054304 -20658775 + L1PB3 LINE L1 6516 6856 0 28 0 0 0 chrY 4054308 4054336 -20658743 + AT_rich Low_complexity Low_complexity 1 28 0 4952 189 57 9 chrY 4054354 4056405 -20656674 + L1MA4A LINE L1 4149 6298 -5 351 186 0 0 chrY 4056408 4056467 -20656612 - Tigger1 DNA MER2_type -2359 59 1 388 352 55 11 chrY 4057639 4057821 -20655258 + L3 LINE CR1 1379 1568 -9 532 371 4 9 chrY 4057871 4058103 -20654976 + L2 LINE L2 2160 2390 -924 341 307 16 8 chrY 4058187 4058314 -20654765 - MER91B DNA MER1_type -61 129 2 587 312 82 52 chrY 4058329 4058672 -20654407 + L2 LINE L2 2384 2736 -578 443 344 144 23 chrY 4059332 4059829 -20653250 + L2 LINE L2 2737 3300 -13 2122 95 34 0 chrY 4060137 4060431 -20652648 - AluY SINE Alu -7 304 1 247 309 55 27 chrY 4060432 4060542 -20652537 - L2 LINE L2 -22 3291 3179 1483 186 197 0 chrY 4060723 4061084 -20651995 + MER66A LTR ERV1 2 433 -45 22 0 0 0 chrY 4061702 4061724 -20651355 + AT_rich Low_complexity Low_complexity 1 22 0 1467 167 48 0 chrY 4062265 4062516 -20650563 - Tigger3(Golem) DNA MER2_type -2 3027 2765 1187 171 138 30 chrY 4063342 4063646 -20649433 - L1MC3 LINE L1 -21 7764 7428 2265 48 7 14 chrY 4063657 4063951 -20649128 - AluY SINE Alu -19 292 1 1385 250 121 13 chrY 4063952 4064348 -20648731 + MER31B LTR ERV1 7 445 -21 2335 188 22 53 chrY 4064351 4064857 -20648222 + MLT2B1 LTR ERVL 21 510 -10 4068 221 51 20 chrY 4064889 4065920 -20647159 - L1MC3 LINE L1 -352 7433 6371 2232 151 48 10 chrY 4065920 4066332 -20646747 + MSTA LTR MaLR 1 428 0 8641 186 22 7 chrY 4066332 4067959 -20645120 + MSTA-int LTR MaLR 1 1651 0 1930 152 53 6 chrY 4067962 4068304 -20644775 + MSTA LTR MaLR 4 361 -67 320 211 0 56 chrY 4068304 4068394 -20644685 - L1MC4 LINE L1 -1344 6698 6614 209 207 0 17 chrY 4068396 4068454 -20644625 + (CATATA)n Simple_repeat Simple_repeat 6 62 0 372 96 0 0 chrY 4068457 4068509 -20644570 + MSTA LTR MaLR 377 428 0 4140 228 39 36 chrY 4068532 4069361 -20643718 - L1MC3 LINE L1 -748 5398 4573 6478 62 0 12 chrY 4069361 4070205 -20642874 + L1PA6 LINE L1 5321 6154 0 4140 228 39 36 chrY 4070205 4070234 -20642845 - L1MC3 LINE L1 -1573 4573 4546 1358 172 39 88 chrY 4070234 4070618 -20642461 - MLT1A1 LTR MaLR 0 365 1 4140 228 39 36 chrY 4070618 4071454 -20641625 - L1MC3 LINE L1 -1600 4546 4656 1937 157 0 0 chrY 4071454 4071754 -20641325 + AluSx SINE Alu 1 300 -12 4140 228 39 36 chrY 4071754 4072023 -20641056 - L1MC3 LINE L1 -1489 4657 4390 3063 147 85 5 chrY 4072091 4072677 -20640402 - L1PA16 LINE L1 -2 6164 5532 1830 224 30 72 chrY 4072678 4073208 -20639871 + MLT2B3 LTR ERVL 1 508 -46 8415 53 9 0 chrY 4073210 4075060 -20638019 - L1PA5 LINE L1 0 6154 4291 1917 23 0 0 chrY 4075060 4075279 -20637800 + L1P LINE L1 4027 4245 -1901 491 128 13 3 chrY 4075280 4075383 -20637696 + MLT2A2 LTR ERVL 386 453 0 3629 208 18 14 chrY 4075383 4076462 -20636617 - L1PA16 LINE L1 -631 5535 4448 186 71 0 0 chrY 4076462 4076490 -20636589 + (TG)n Simple_repeat Simple_repeat 1 28 0 3629 208 18 14 chrY 4076490 4076530 -20636549 - L1PA16 LINE L1 -1718 4448 4410 916 255 45 16 chrY 4076653 4077159 -20635920 - L1MC3 LINE L1 -2877 3269 2749 680 288 25 25 chrY 4077187 4077423 -20635656 + L1M4 LINE L1 24 259 -6283 9628 211 11 19 chrY 4077598 4078238 -20634841 + L1 LINE L1 17 660 -6905 2196 125 3 0 chrY 4078238 4078541 -20634538 + AluSq SINE Alu 1 304 -9 9628 211 11 19 chrY 4078541 4079830 -20633249 + L1 LINE L1 660 1931 -5634 972 192 4 73 chrY 4079832 4079919 -20633160 + L1 LINE L1 5235 5326 -2239 2356 100 0 0 chrY 4079919 4080229 -20632850 + AluSg SINE Alu 1 310 0 972 192 4 73 chrY 4080229 4080386 -20632693 + L1 LINE L1 5326 5462 -2103 243 143 0 0 chrY 4080387 4080422 -20632657 + MER61E LTR ERV1 531 565 -4 1657 269 52 37 chrY 4080435 4081237 -20631842 - L1ME3A LINE L1 -180 5990 5176 25 0 0 0 chrY 4081539 4081564 -20631515 + AT_rich Low_complexity Low_complexity 1 25 0 55 48 0 0 chrY 4083214 4083297 -20629782 + AT_rich Low_complexity Low_complexity 1 83 0 400 315 27 0 chrY 4083564 4083675 -20629404 - LTR16C LTR ERVL -314 177 64 239 208 217 19 chrY 4083785 4083891 -20629188 + MIR SINE MIR 122 248 -14 33 66 0 0 chrY 4084100 4084161 -20628918 + AT_rich Low_complexity Low_complexity 1 61 0 478 352 102 20 chrY 4084645 4084989 -20628090 + L2 LINE L2 2304 2675 -639 243 296 70 0 chrY 4084993 4085064 -20628015 + L2 LINE L2 3228 3303 -10 562 351 32 59 chrY 4085274 4085715 -20627364 + L2 LINE L2 2844 3272 0 1064 325 27 19 chrY 4085816 4086229 -20626850 + LTR16A LTR ERVL 30 445 -5 258 236 18 0 chrY 4086390 4086445 -20626634 + MER39 LTR ERV1 1 56 -651 * 811 269 71 47 chrY 4086440 4086804 -20626275 + MER39 LTR ERV1 335 707 0 246 283 74 30 chrY 4087289 4087423 -20625656 + LTR33A LTR ERVL 294 433 -88 191 167 24 0 chrY 4088598 4088640 -20624439 + CT-rich Low_complexity Low_complexity 2 44 0 4322 176 18 44 chrY 4089097 4090061 -20623018 - L1MA10 LINE L1 0 6334 5396 391 248 202 0 chrY 4090065 4090194 -20622885 + MER50 LTR ERV1 14 168 -566 1498 218 89 40 chrY 4090258 4090708 -20622371 + MER50 LTR ERV1 241 712 -22 3332 218 22 46 chrY 4090724 4091721 -20621358 - L1MA10 LINE L1 -745 5401 4443 1885 148 58 18 chrY 4091721 4092051 -20621028 - MER61A LTR ERV1 0 343 1 3332 218 22 46 chrY 4092051 4092062 -20621017 - L1MA10 LINE L1 -1703 4443 4433 24694 102 33 21 chrY 4092062 4094689 -20618390 - MER61A-int LTR ERV1 -11 5206 2519 4886 81 5 77 chrY 4094689 4095430 -20617649 - LTR12 LTR ERV1 0 688 1 24694 102 33 21 chrY 4095430 4096556 -20616523 - MER61A-int LTR ERV1 -2698 2519 1408 321 47 0 0 chrY 4096555 4096598 -20616481 - MER61A-int LTR ERV1 -3855 1362 1320 * 1321 170 31 40 chrY 4096591 4097196 -20615883 - MER61A-int LTR ERV1 -4440 777 1 1376 163 150 3 chrY 4097196 4097490 -20615589 - MER61A LTR ERV1 0 343 7 6539 219 65 47 chrY 4097492 4099727 -20613352 - L1MA10 LINE L1 -1698 4448 2172 24 0 0 0 chrY 4099738 4099762 -20613317 + AT_rich Low_complexity Low_complexity 1 24 0 4793 189 2 9 chrY 4099802 4100712 -20612367 - L1PA16 LINE L1 -6 6160 5257 1875 249 25 2 chrY 4101046 4101480 -20611599 + MLT1C LTR MaLR 3 446 -21 2007 205 29 20 chrY 4101480 4101928 -20611151 - MER66A LTR ERV1 0 478 27 756 235 0 0 chrY 4101935 4102071 -20611008 - MER66A-int LTR ERV1 0 6676 6541 437 210 56 31 chrY 4102071 4102233 -20610846 + L1M1 LINE L1 2711 3205 -4361 251 0 59 0 chrY 4102274 4102308 -20610771 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 271 362 8 16 chrY 4102998 4103125 -20609954 + L1PBb LINE L1 768 893 -5957 275 294 11 11 chrY 4103579 4103671 -20609408 + L1PBb LINE L1 1473 1564 -5285 * 10324 234 32 33 chrY 4103656 4108903 -20604176 + L1PA16 LINE L1 1335 6682 -187 40 87 0 0 chrY 4108932 4109035 -20604044 + AT_rich Low_complexity Low_complexity 1 103 0 333 150 159 9 chrY 4109040 4109153 -20603926 + L1MA7 LINE L1 6086 6215 -76 243 61 0 0 chrY 4109155 4109188 -20603891 + (TG)n Simple_repeat Simple_repeat 2 34 0 11423 166 27 2 chrY 4109194 4111016 -20602063 - L1PA12 LINE L1 -5712 1869 1 1264 325 61 103 chrY 4111591 4112335 -20600744 - L2 LINE L2 -2016 1298 524 1944 143 52 25 chrY 4112335 4112698 -20600381 + THE1C LTR MaLR 1 373 -2 229 62 31 0 chrY 4112698 4112730 -20600349 + THE1B LTR MaLR 332 364 0 1264 325 61 103 chrY 4112730 4113199 -20599880 - L2 LINE L2 -2788 526 106 36 70 0 0 chrY 4113598 4113669 -20599410 + AT_rich Low_complexity Low_complexity 1 71 0 3935 136 71 37 chrY 4113698 4114432 -20598647 - LTR1 LTR ERV1 0 785 27 571 293 68 60 chrY 4114542 4114942 -20598137 + L1ME1 LINE L1 2 404 -5641 1629 253 207 40 chrY 4114968 4115943 -20597136 + L1ME1 LINE L1 542 1353 -5211 1276 188 4 174 chrY 4115943 4116442 -20596637 - MLT2D LTR ERVL 0 414 1 1629 253 207 40 chrY 4116442 4117139 -20595940 + L1ME1 LINE L1 1353 1932 -4632 2316 108 3 0 chrY 4117139 4117444 -20595635 + AluSp SINE Alu 1 306 -7 1629 253 207 40 chrY 4117444 4117531 -20595548 + L1ME1 LINE L1 1932 2608 -3956 819 134 0 8 chrY 4117528 4117662 -20595417 - L1PA16 LINE L1 -263 5903 5771 * 785 164 16 28 chrY 4117649 4117877 -20595202 + L1PA16 LINE L1 5905 6165 -1 * 381 340 32 26 chrY 4117897 4118305 -20594774 + L1ME3 LINE L1 5482 5888 -274 * 36472 43 33 2 chrY 4118293 4124307 -20588772 + L1PA3 LINE L1 2 6155 0 1548 260 40 37 chrY 4124539 4125239 -20587840 + L1ME1 LINE L1 2618 3319 -3245 783 238 77 35 chrY 4125241 4125507 -20587572 + L1ME1 LINE L1 4120 4404 -2160 1971 216 41 5 chrY 4125507 4125918 -20587161 - MSTB LTR MaLR 0 426 1 783 238 77 35 chrY 4125918 4125991 -20587088 + L1ME1 LINE L1 4404 4473 -2091 * 3126 217 55 6 chrY 4125989 4126782 -20586297 + L1MC3 LINE L1 6945 7776 -9 1107 281 24 36 chrY 4127124 4127622 -20585457 - L1M4 LINE L1 -743 5403 4912 2383 267 35 34 chrY 4127647 4128831 -20584248 + L1ME1 LINE L1 5388 6569 -15 4031 153 24 1 chrY 4128984 4129681 -20583398 - L1MA1 LINE L1 -4 6298 5586 589 135 11 0 chrY 4129681 4129770 -20583309 - L1M1 LINE L1 -606 5696 5607 * 1823 205 14 0 chrY 4129769 4130139 -20582940 - L1M1 LINE L1 -1083 5063 4689 1488 223 8 51 chrY 4130239 4130594 -20582485 + MLT1A1 LTR MaLR 1 340 -25 6543 48 2 5 chrY 4130596 4131412 -20581667 - L1PA7 LINE L1 -13 6141 5328 2671 303 36 20 chrY 4131432 4132337 -20580742 - L1M4 LINE L1 -5621 921 2 3690 252 58 65 chrY 4132406 4134398 -20578681 - L1MDb LINE L1 -1525 4881 2904 5263 209 63 23 chrY 4134511 4135590 -20577489 - L1MC3 LINE L1 -9 7776 6627 1788 198 19 3 chrY 4135590 4135949 -20577130 + MLT1A1 LTR MaLR 1 365 0 5263 209 63 23 chrY 4135949 4136259 -20576820 - L1MC3 LINE L1 -1158 6627 6331 3696 228 40 24 chrY 4136275 4137451 -20575628 - L1MB4 LINE L1 -1 6179 5024 198 71 0 0 chrY 4137451 4137479 -20575600 + (TTG)n Simple_repeat Simple_repeat 3 30 0 1710 173 7 0 chrY 4137482 4137766 -20575313 - AluJb SINE Alu -26 286 1 3696 228 40 24 chrY 4137766 4138428 -20574651 - L1MB4 LINE L1 -1157 5023 4309 462 255 68 0 chrY 4138418 4138610 -20574469 - L1M4 LINE L1 -807 5339 5135 * 860 257 49 6 chrY 4138589 4138935 -20574144 - L1MDb LINE L1 -3937 2469 2109 23 68 0 0 chrY 4138993 4139037 -20574042 + AT_rich Low_complexity Low_complexity 1 44 0 946 159 25 18 chrY 4139041 4139204 -20573875 - AluSg/x SINE Alu -20 292 129 2781 245 47 64 chrY 4139204 4140694 -20572385 - L1MDb LINE L1 -4458 1948 468 394 193 11 23 chrY 4141809 4141897 -20571182 + MER103 DNA DNA 6 92 -74 449 276 98 74 chrY 4142269 4142740 -20570339 + L1ME3A LINE L1 4364 4845 -1301 304 267 48 27 chrY 4142748 4142894 -20570185 + L1ME3A LINE L1 4904 5052 -1094 355 226 39 111 chrY 4142941 4143270 -20569809 + L1ME3A LINE L1 5185 5495 -669 1910 179 5 60 chrY 4143270 4143683 -20569396 - MLT1B LTR MaLR 0 390 1 414 302 92 8 chrY 4143803 4144125 -20568954 + L1ME3A LINE L1 5525 5883 -287 3129 173 45 21 chrY 4144151 4144856 -20568223 - L1M1 LINE L1 -4096 3469 2748 6540 215 21 25 chrY 4144923 4146552 -20566527 - L1 LINE L1 -1186 4960 3337 25 31 0 0 chrY 4146552 4146584 -20566495 + AT_rich Low_complexity Low_complexity 1 32 0 301 210 0 100 chrY 4146585 4146685 -20566394 + L1MC4 LINE L1 6614 6703 -1339 405 253 0 0 chrY 4146697 4146843 -20566236 + (TA)n Simple_repeat Simple_repeat 2 147 0 297 283 0 0 chrY 4146915 4147067 -20566012 + (TA)n Simple_repeat Simple_repeat 2 153 0 277 255 0 32 chrY 4147068 4147162 -20565917 + L1MC4 LINE L1 6613 6703 -1339 1782 132 10 28 chrY 4147165 4147453 -20565626 - AluSx SINE Alu -29 283 1 2706 242 39 18 chrY 4147453 4148299 -20564780 - L1 LINE L1 -2801 3345 2482 11922 184 29 47 chrY 4148328 4148956 -20564123 + L1P LINE L1 2386 3024 -3122 1845 148 7 16 chrY 4148956 4149260 -20563819 + AluSx SINE Alu 6 306 -6 11922 184 29 47 chrY 4149260 4151553 -20561526 + L1P LINE L1 3024 5253 -893 6937 59 5 2 chrY 4151553 4152450 -20560629 + L1PA7 LINE L1 5254 6152 -2 3022 269 28 22 chrY 4152463 4152931 -20560148 - L1PBb LINE L1 -3654 2549 2085 1737 248 41 5 chrY 4152931 4153342 -20559737 + MSTB LTR MaLR 1 426 0 3022 269 28 22 chrY 4153342 4154090 -20558989 - L1PBb LINE L1 -4118 2085 1318 4671 105 44 31 chrY 4154114 4155215 -20557864 + MER11A LTR ERVK 1 1071 0 1231 284 50 13 chrY 4155225 4156192 -20556887 - L1PBb LINE L1 -4995 1209 347 345 366 6 6 chrY 4156310 4156482 -20556597 - L1PBb LINE L1 -5848 356 185 347 309 67 43 chrY 4156629 4156839 -20556240 - L1PBa LINE L1 -5220 1643 1429 281 448 15 8 chrY 4156894 4157287 -20555792 - L1PBa LINE L1 -6397 466 71 3940 137 15 122 chrY 4157287 4158840 -20554239 - pTR5 LTR ERV1 0 2606 1524 471 213 158 55 chrY 4159833 4160105 -20552974 - L1ME1 LINE L1 -8 6158 5859 26 30 0 0 chrY 4160127 4160160 -20552919 + AT_rich Low_complexity Low_complexity 1 33 0 26 82 0 0 chrY 4161107 4161168 -20551911 + AT_rich Low_complexity Low_complexity 1 61 0 29 0 0 0 chrY 4161381 4161410 -20551669 + AT_rich Low_complexity Low_complexity 1 29 0 2305 137 58 35 chrY 4161565 4162084 -20550995 - MLT2A2 LTR ERVL 0 554 2 8084 216 28 27 chrY 4162609 4164803 -20548276 + L1M2 LINE L1 3289 5490 -743 499 227 10 0 chrY 4164804 4164901 -20548178 + L1MCa LINE L1 407 504 -5922 1918 240 79 15 chrY 4164902 4164943 -20548136 - MLT2B3 LTR ERVL 0 554 517 320 0 25 0 chrY 4164943 4164983 -20548096 + (GA)n Simple_repeat Simple_repeat 2 42 0 1918 240 79 15 chrY 4164983 4165461 -20547618 - MLT2B3 LTR ERVL -37 517 2 7626 226 51 44 chrY 4165462 4168394 -20544685 - ERVL LTR ERVL -7 5757 2813 332 182 40 7 chrY 4168394 4168542 -20544537 + (TA)n Simple_repeat Simple_repeat 1 153 0 29 70 0 0 chrY 4168881 4168938 -20544141 + AT_rich Low_complexity Low_complexity 1 57 0 23 0 0 0 chrY 4169640 4169663 -20543416 + AT_rich Low_complexity Low_complexity 1 23 0 21 57 0 0 chrY 4169684 4169719 -20543360 + AT_rich Low_complexity Low_complexity 1 35 0 23 54 0 0 chrY 4169919 4169956 -20543123 + AT_rich Low_complexity Low_complexity 1 37 0 465 315 83 0 chrY 4169977 4170158 -20542921 - MIR SINE MIR -18 244 49 532 359 86 10 chrY 4170226 4170794 -20542285 - L2 LINE L2 -60 3253 2636 388 318 183 8 chrY 4170801 4171053 -20542026 - L2 LINE L2 -900 2414 2119 261 0 0 0 chrY 4171300 4171329 -20541750 + (TG)n Simple_repeat Simple_repeat 2 30 0 184 170 38 0 chrY 4171695 4171748 -20541331 + (TA)n Simple_repeat Simple_repeat 2 56 0 291 159 14 29 chrY 4171809 4171878 -20541201 - L1PA16 LINE L1 -1 7603 7536 12132 242 35 22 chrY 4171879 4175536 -20537543 - L1PA16 LINE L1 -105 7499 3750 2500 146 26 5 chrY 4175536 4175955 -20537124 + MSTA LTR MaLR 1 428 0 12132 242 35 22 chrY 4175955 4177509 -20535570 - L1PA16 LINE L1 -3854 3750 2217 276 284 0 0 chrY 4177776 4177857 -20535222 - L1PA16 LINE L1 -5398 2183 2103 698 346 59 41 chrY 4177974 4178563 -20534516 - L1PA16 LINE L1 -6187 1387 788 424 325 102 35 chrY 4178589 4178903 -20534176 - L2 LINE L2 -1812 1502 1168 524 348 100 58 chrY 4178970 4179503 -20533576 - L2 LINE L2 -2509 805 243 318 98 0 0 chrY 4179503 4179554 -20533525 + (TG)n Simple_repeat Simple_repeat 1 51 0 524 348 100 58 chrY 4179554 4179609 -20533470 - L2 LINE L2 -3071 243 192 249 327 10 48 chrY 4179806 4179910 -20533169 + MER5A DNA MER1_type 90 189 0 315 141 70 14 chrY 4179940 4180011 -20533068 + L1MCa LINE L1 1990 2064 -4362 * 331 306 10 0 chrY 4179965 4180063 -20533016 - L1MC4 LINE L1 -1340 6702 6604 27 0 0 0 chrY 4180155 4180182 -20532897 + AT_rich Low_complexity Low_complexity 1 27 0 442 281 73 37 chrY 4180502 4180748 -20532331 - MIR SINE MIR -3 259 5 30 27 0 0 chrY 4181440 4181477 -20531602 + AT_rich Low_complexity Low_complexity 1 37 0 1485 217 0 11 chrY 4182007 4182305 -20530774 - AluJo SINE Alu 0 307 13 632 241 88 72 chrY 4183357 4183800 -20529279 - L1MC4 LINE L1 -130 7912 7357 484 258 7 13 chrY 4184126 4184277 -20528802 + L1PBa LINE L1 43 192 -6671 25 65 0 0 chrY 4184588 4184634 -20528445 + AT_rich Low_complexity Low_complexity 1 46 0 24 53 0 0 chrY 4184818 4184856 -20528223 + AT_rich Low_complexity Low_complexity 1 38 0 3645 186 33 12 chrY 4185011 4185763 -20527316 - L1MB1 LINE L1 0 5992 5225 5073 230 49 19 chrY 4186231 4186936 -20526143 - L1MB1 LINE L1 -1188 4782 4099 2020 100 4 7 chrY 4186936 4187235 -20525844 + AluSc SINE Alu 1 298 0 5073 230 49 19 chrY 4187235 4187948 -20525131 - L1MB1 LINE L1 -1871 4099 3321 988 327 22 58 chrY 4188044 4188545 -20524534 - L1MB1 LINE L1 -5406 485 3 3018 181 34 47 chrY 4188747 4189447 -20523632 - LTR8 LTR ERV1 0 691 1 25 83 0 0 chrY 4190273 4190333 -20522746 + AT_rich Low_complexity Low_complexity 1 60 0 328 271 177 44 chrY 4190623 4190805 -20522274 - MLT1J LTR MaLR -89 526 238 447 331 54 29 chrY 4191122 4191364 -20521715 - MIR SINE MIR -12 250 3 1704 304 30 18 chrY 4191550 4191652 -20521427 - MLT1H1 LTR MaLR 0 555 456 1508 245 58 36 chrY 4191652 4192183 -20520896 - MER67A LTR ERV1 0 543 1 1704 304 30 18 chrY 4192183 4192623 -20520456 - MLT1H1 LTR MaLR -99 456 7 250 191 12 36 chrY 4192927 4193011 -20520068 + (TTATA)n Simple_repeat Simple_repeat 4 85 0 198 0 0 0 chrY 4194478 4194500 -20518579 + (T)n Simple_repeat Simple_repeat 1 22 0 1375 337 65 27 chrY 4195270 4196086 -20516993 + ERVL LTR ERVL 3645 4491 -1273 896 335 46 27 chrY 4196252 4196898 -20516181 + ERVL LTR ERVL 4681 5333 -321 1711 303 30 10 chrY 4197083 4197591 -20515488 + LTR33 LTR ERVL 3 520 -1 12147 74 8 1 chrY 4197906 4200347 -20512732 + L1PA6 LINE L1 3725 6176 0 213 39 0 0 chrY 4201772 4201798 -20511281 + (TTTTG)n Simple_repeat Simple_repeat 4 29 0 206 229 21 21 chrY 4202804 4202852 -20510227 + L2 LINE L2 2734 2781 -533 297 0 0 0 chrY 4202904 4202937 -20510142 + (TC)n Simple_repeat Simple_repeat 1 33 0 270 0 0 0 chrY 4202936 4202966 -20510113 + (CA)n Simple_repeat Simple_repeat 1 30 0 * 201 94 0 0 chrY 4203055 4203087 -20509992 + (TG)n Simple_repeat Simple_repeat 2 33 0 444 67 0 0 chrY 4203096 4203156 -20509923 + (GGA)n Simple_repeat Simple_repeat 1 60 0 417 312 7 35 chrY 4203261 4203402 -20509677 - MIR SINE MIR -99 163 27 219 114 0 0 chrY 4204371 4204406 -20508673 + (TG)n Simple_repeat Simple_repeat 2 36 0 252 0 0 0 chrY 4205032 4205060 -20508019 + (A)n Simple_repeat Simple_repeat 1 28 0 21 0 0 0 chrY 4205688 4205709 -20507370 + AT_rich Low_complexity Low_complexity 1 21 0 365 304 8 8 chrY 4207174 4207299 -20505780 - L1ME1 LINE L1 -21 6145 6021 274 390 43 0 chrY 4207401 4207542 -20505537 + L2 LINE L2 1061 1207 -2107 23 0 0 0 chrY 4208927 4208950 -20504129 + AT_rich Low_complexity Low_complexity 1 23 0 1811 123 0 0 chrY 4210220 4210480 -20502599 - MER4D LTR ERV1 -2 870 611 1553 175 11 15 chrY 4210480 4210754 -20502325 - AluJb SINE Alu -39 273 1 269 297 28 28 chrY 4210769 4210914 -20502165 - L1ME LINE L1 -4598 1663 1519 377 289 69 19 chrY 4210933 4211092 -20501987 - L1ME LINE L1 -4670 1410 1244 612 249 92 59 chrY 4211124 4211462 -20501617 - L1ME LINE L1 -4817 1263 880 315 314 114 0 chrY 4211487 4211627 -20501452 - L1ME LINE L1 -5379 691 536 988 349 52 9 chrY 4211632 4211772 -20501307 - L1ME LINE L1 -5580 490 358 2002 82 86 0 chrY 4211772 4212051 -20501028 - AluSq SINE Alu -10 303 1 988 349 52 9 chrY 4212051 4212369 -20500710 - L1ME LINE L1 -5712 358 12 236 284 78 78 chrY 4212523 4212625 -20500454 + L3 LINE CR1 1329 1430 -147 185 265 20 0 chrY 4212646 4212695 -20500384 - L2 LINE L2 -6 3266 3217 229 130 0 37 chrY 4213210 4213264 -20499815 - L1MC4 LINE L1 -1339 6703 6652 21 36 0 0 chrY 4213742 4213770 -20499309 + AT_rich Low_complexity Low_complexity 1 28 0 5771 178 8 2 chrY 4214170 4216017 -20497062 - L1PB1 LINE L1 0 6867 5012 2664 201 42 0 chrY 4216015 4216537 -20496542 - L1PB1 LINE L1 -6188 675 132 * 21 36 0 0 chrY 4216560 4216588 -20496491 + AT_rich Low_complexity Low_complexity 1 28 0 1753 151 3 41 chrY 4216651 4216969 -20496110 - AluJo SINE Alu -6 306 1 836 189 13 6 chrY 4217287 4217446 -20495633 + MLT1E2 LTR MaLR 1 160 -466 1140 254 16 26 chrY 4217449 4217756 -20495323 + MLT1E2 LTR MaLR 319 622 -4 24 53 0 0 chrY 4218185 4218223 -20494856 + AT_rich Low_complexity Low_complexity 1 38 0 21 36 0 0 chrY 4219695 4219723 -20493356 + AT_rich Low_complexity Low_complexity 1 28 0 28 48 0 0 chrY 4219902 4219944 -20493135 + AT_rich Low_complexity Low_complexity 1 42 0 774 271 75 18 chrY 4221534 4221814 -20491265 - L2 LINE L2 -22 3291 2996 211 203 89 51 chrY 4222135 4222205 -20490874 - MIR3 SINE MIR -34 174 99 384 22 0 0 chrY 4222205 4222250 -20490829 + (TG)n Simple_repeat Simple_repeat 1 45 0 657 100 0 0 chrY 4222563 4222663 -20490416 - L1MA1 LINE L1 0 6302 6203 1642 228 57 76 chrY 4222796 4223424 -20489655 + MLT1E2 LTR MaLR 11 626 0 1726 126 11 0 chrY 4224013 4224291 -20488788 - L1PB1 LINE L1 -5 6146 5866 207 0 0 0 chrY 4224291 4224314 -20488765 + (AATAG)n Simple_repeat Simple_repeat 4 26 0 10989 220 33 30 chrY 4224326 4224621 -20488458 - L1P3 LINE L1 -2610 3851 3558 8482 47 2 0 chrY 4224621 4225585 -20487494 + LTR5 LTR ERVK 1 966 -3 10989 220 33 30 chrY 4225585 4227836 -20485243 - L1P3 LINE L1 -2903 3558 1287 189 0 0 0 chrY 4227836 4227857 -20485222 + (TTG)n Simple_repeat Simple_repeat 1 21 0 10989 220 33 30 chrY 4227857 4229126 -20483953 - L1P3 LINE L1 -5174 1287 24 1436 97 0 0 chrY 4229130 4229326 -20483753 - L1PA7 LINE L1 0 6154 5959 26772 131 15 28 chrY 4229326 4234812 -20478267 - L1P3 LINE L1 -910 5551 10 890 302 13 10 chrY 4236530 4236841 -20476238 - MLT1J2 LTR MaLR -124 326 15 588 98 43 11 chrY 4236921 4237013 -20476066 - THE1B LTR MaLR -13 351 257 1367 204 8 8 chrY 4237946 4238191 -20474888 - AluJb SINE Alu -30 282 37 1819 181 17 3 chrY 4238191 4238489 -20474590 - AluSx SINE Alu -2 310 9 1899 121 0 8 chrY 4238873 4239138 -20473941 - AluSg SINE Alu -13 297 35 1498 183 61 4 chrY 4239223 4239485 -20473594 + AluSx SINE Alu 21 297 -15 581 231 49 0 chrY 4239487 4239630 -20473449 + Tigger2 DNA MER2_type 2566 2715 -3 1447 221 58 25 chrY 4239644 4240129 -20472950 + L1MB4 LINE L1 5679 6179 -1 1000 224 39 39 chrY 4240318 4240653 -20472426 - L1MB5 LINE L1 0 6174 5840 4716 188 35 8 chrY 4240669 4241650 -20471429 - L1MC1 LINE L1 -1 6332 5326 2092 119 0 10 chrY 4241652 4241946 -20471133 - AluSg SINE Alu -14 296 6 765 182 98 0 chrY 4241951 4242094 -20470985 - FRAM SINE Alu -5 161 5 405 213 103 13 chrY 4242094 4242249 -20470830 - L1MB5 LINE L1 -344 5830 5662 1932 147 0 7 chrY 4242251 4242573 -20470506 + AluSg SINE Alu 1 310 0 1072 268 77 20 chrY 4242639 4243399 -20469680 - L1MB5 LINE L1 -686 5648 4817 21 0 0 0 chrY 4243601 4243622 -20469457 + AT_rich Low_complexity Low_complexity 1 21 0 198 0 0 0 chrY 4244706 4244728 -20468351 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 37121 68 2 1 chrY 4244728 4250613 -20462466 - L1PA5 LINE L1 -11 6143 254 911 199 127 4 chrY 4250609 4250876 -20462203 - L1MB2 LINE L1 -106 6065 5766 * 2048 110 119 3 chrY 4250882 4251218 -20461861 - MER51B LTR ERV1 -2 375 1 6973 145 53 26 chrY 4251222 4252285 -20460794 - MER51B-int LTR ERV1 -2 7814 6781 2260 92 0 23 chrY 4252285 4252588 -20460491 - AluY SINE Alu -11 300 5 6973 145 53 26 chrY 4252588 4253505 -20459574 - MER51B-int LTR ERV1 -1035 6781 5551 1591 144 89 0 chrY 4253505 4253775 -20459304 - AluSg1 SINE Alu -15 294 1 6973 145 53 26 chrY 4253775 4253925 -20459154 - MER51B-int LTR ERV1 -2265 5551 5407 1704 131 20 9 chrY 4253902 4254299 -20458780 - MER51-int LTR ERV1 -2555 2662 2217 * 1640 150 73 34 chrY 4254311 4254748 -20458331 - MER51-int LTR ERV1 -2774 3172 1487 7071 125 77 15 chrY 4254751 4255477 -20457602 - MER51-int LTR ERV1 -4506 3310 2631 1913 183 93 30 chrY 4255477 4255937 -20457142 + LTR2B LTR ERV1 1 489 -1 7071 125 77 15 chrY 4255937 4256626 -20456453 - MER51-int LTR ERV1 -5185 2631 1807 607 166 50 68 chrY 4256627 4256826 -20456253 - MER4A LTR ERV1 -130 534 281 1035 152 25 0 chrY 4256883 4257081 -20455998 - MER51-int LTR ERV1 -6982 1138 936 1070 157 5 0 chrY 4257084 4257269 -20455810 - MER51-int LTR ERV1 -6593 1223 1038 2889 178 45 13 chrY 4257274 4257874 -20455205 - MER51-int LTR ERV1 -7022 794 176 320 317 4 8 chrY 4258898 4259040 -20454039 + GA-rich Low_complexity Low_complexity 1 239 0 3339 113 24 13 chrY 4259050 4259671 -20453408 + BaEV-int LTR ERV1 1919 2546 -4350 3621 288 46 42 chrY 4259847 4261544 -20451535 + BaEV-int LTR ERV1 4362 6064 -585 2808 83 21 3 chrY 4261794 4262309 -20450770 + LTR10C LTR ERV1 1 591 0 1133 81 5 48 chrY 4262309 4262495 -20450584 - MER51B-int LTR ERV1 -7638 178 1 2181 124 58 22 chrY 4262495 4262859 -20450220 - MER51B LTR ERV1 0 377 1 301 147 80 27 chrY 4262861 4262936 -20450143 - L1M3 LINE L1 -420 5763 5685 21 0 0 0 chrY 4263049 4263070 -20450009 + AT_rich Low_complexity Low_complexity 1 21 0 370 291 102 16 chrY 4265257 4265384 -20447695 - L2 LINE L2 -14 3299 3162 663 227 69 66 chrY 4266049 4266189 -20446890 - L1M4 LINE L1 -2444 3702 3564 1935 162 0 0 chrY 4266189 4266486 -20446593 - AluSc SINE Alu -11 298 2 663 227 69 66 chrY 4266486 4266662 -20446417 - L1M4 LINE L1 -2582 3564 3385 500 241 76 19 chrY 4266679 4266837 -20446242 - MER58A DNA MER1_type -16 208 42 817 275 83 33 chrY 4266912 4267145 -20445934 - L1M4 LINE L1 -2806 3340 3120 1083 279 49 14 chrY 4267145 4267572 -20445507 - LTR47B LTR ERVL -1 442 1 817 275 83 33 chrY 4267572 4267938 -20445141 - L1M4 LINE L1 -3026 3120 2711 277 244 13 0 chrY 4268135 4268213 -20444866 - MER116 DNA Mariner -1 79 1 617 215 7 14 chrY 4269144 4269312 -20443767 + L1MB3 LINE L1 5930 6095 -88 27 29 0 0 chrY 4269777 4269811 -20443268 + AT_rich Low_complexity Low_complexity 1 34 0 21 0 0 0 chrY 4270620 4270641 -20442438 + AT_rich Low_complexity Low_complexity 1 21 0 6596 80 0 4 chrY 4270643 4272356 -20440723 - L1PA7 LINE L1 -3 6151 4440 6399 209 37 20 chrY 4272343 4273096 -20439983 - L1P LINE L1 -2521 3625 2887 2040 141 3 0 chrY 4273096 4273402 -20439677 - AluSc SINE Alu -2 307 1 6399 209 37 20 chrY 4273402 4274198 -20438881 - L1P LINE L1 -3259 2887 2049 483 231 0 60 chrY 4274372 4274489 -20438590 + FRAM SINE Alu 48 157 -19 1689 206 16 32 chrY 4274510 4274883 -20438196 - Tigger2 DNA MER2_type -1987 731 365 1482 219 13 3 chrY 4274942 4275244 -20437835 - AluJo SINE Alu -1 311 7 1293 196 34 44 chrY 4275250 4275633 -20437446 - Tigger2 DNA MER2_type -2338 380 2 2883 227 36 46 chrY 4276441 4277512 -20435567 - L1MA6 LINE L1 0 6300 5289 217 184 20 0 chrY 4277663 4277712 -20435367 + (TTTA)n Simple_repeat Simple_repeat 3 52 0 463 228 10 18 chrY 4277984 4278149 -20434930 - L1M3 LINE L1 -646 5534 5374 400 265 17 2 chrY 4278311 4278433 -20434646 + MER5A DNA MER1_type 3 138 -51 238 153 38 76 chrY 4278741 4278898 -20434181 + (TATAA)n Simple_repeat Simple_repeat 4 154 0 * 365 128 50 67 chrY 4278810 4278990 -20434089 + (TTATA)n Simple_repeat Simple_repeat 3 179 0 339 186 43 37 chrY 4279002 4279163 -20433916 + (TATAA)n Simple_repeat Simple_repeat 3 164 0 30 0 0 0 chrY 4279189 4279219 -20433860 + AT_rich Low_complexity Low_complexity 1 30 0 337 214 52 23 chrY 4279219 4279392 -20433687 + (TATAA)n Simple_repeat Simple_repeat 2 179 0 269 199 30 23 chrY 4279459 4279590 -20433489 + (TTATA)n Simple_repeat Simple_repeat 3 134 0 40 37 0 0 chrY 4279798 4279852 -20433227 + AT_rich Low_complexity Low_complexity 1 54 0 950 230 19 5 chrY 4279992 4280201 -20432878 + AluJo SINE Alu 11 222 -90 342 281 61 0 chrY 4280202 4280284 -20432795 + AluJo SINE Alu 89 175 -127 946 246 11 8 chrY 4280287 4280547 -20432532 + AluJo SINE Alu 44 304 -8 327 291 101 7 chrY 4280557 4280705 -20432374 + L1M4 LINE L1 5 166 -6376 752 289 62 0 chrY 4280789 4281000 -20432079 - MER58A DNA MER1_type 0 224 1 643 215 0 15 chrY 4281063 4281198 -20431881 - FLAM_C SINE Alu 0 143 11 288 271 0 12 chrY 4281892 4281977 -20431102 - L1M4 LINE L1 -6376 166 83 2077 133 0 7 chrY 4282157 4282458 -20430621 - AluSq SINE Alu -14 299 1 1425 212 0 25 chrY 4282642 4282958 -20430121 - AluJo SINE Alu -2 310 3 674 276 109 0 chrY 4284148 4284340 -20428739 - MER20 DNA MER1_type -6 213 1 30 0 0 0 chrY 4284369 4284399 -20428680 + AT_rich Low_complexity Low_complexity 1 30 0 276 270 87 8 chrY 4284658 4284784 -20428295 - L1ME4a LINE L1 -19 6102 5967 182 309 36 0 chrY 4284923 4284978 -20428101 - L2 LINE L2 -22 3250 3194 350 245 167 52 chrY 4286566 4286758 -20426321 - MER41C LTR ERV1 -340 214 1 1372 254 17 17 chrY 4286805 4287164 -20425915 - MLT1A1 LTR MaLR -6 359 1 813 224 49 2 chrY 4287503 4287697 -20425382 + MER20 DNA MER1_type 1 219 0 642 236 10 51 chrY 4287969 4288164 -20424915 - MER5A DNA MER1_type -2 187 1 21 36 0 0 chrY 4289180 4289208 -20423871 + AT_rich Low_complexity Low_complexity 1 28 0 35379 107 14 13 chrY 4289595 4295716 -20417363 + L1PA6 LINE L1 11 6137 -17 210 129 48 0 chrY 4295719 4295781 -20417298 + (TA)n Simple_repeat Simple_repeat 2 66 0 5163 102 48 7 chrY 4295785 4296593 -20416486 + L1PA7 LINE L1 5313 6153 -1 213 167 24 0 chrY 4296907 4296949 -20416130 + (TA)n Simple_repeat Simple_repeat 1 43 0 1455 188 22 16 chrY 4297031 4297345 -20415734 - L1MA8 LINE L1 -22 6269 5954 556 161 21 0 chrY 4297345 4297438 -20415641 - MER66A LTR ERV1 0 478 384 11601 201 55 27 chrY 4297461 4300240 -20412839 - L1PB1 LINE L1 -5 6862 4162 2295 108 0 0 chrY 4300240 4300535 -20412544 + AluY SINE Alu 1 295 -16 11601 201 55 27 chrY 4300535 4303695 -20409384 - L1PB1 LINE L1 -2705 4162 621 882 176 28 34 chrY 4303695 4303871 -20409208 - HUERS-P3b LTR ERV1 -1382 6036 5862 233 307 117 24 chrY 4304184 4304389 -20408690 + L2 LINE L2 1758 1981 -1333 488 342 22 19 chrY 4304434 4304703 -20408376 + HERVI LTR ERV1 7378 7647 -138 2140 95 0 55 chrY 4306512 4306863 -20406216 - AluY SINE Alu 0 333 1 859 112 32 14 chrY 4307050 4307345 -20405734 + CT-rich Low_complexity Low_complexity 1 300 0 820 273 19 0 chrY 4307353 4307558 -20405521 - MER58A DNA MER1_type -12 212 4 325 304 78 17 chrY 4307658 4307773 -20405306 + FLAM_A SINE Alu 2 123 -10 2116 117 4 0 chrY 4308354 4308660 -20404419 + AluSq SINE Alu 1 307 0 344 325 42 0 chrY 4309496 4309616 -20403463 - L2 LINE L2 -3 3310 3186 312 387 43 18 chrY 4309682 4310010 -20403069 - L2 LINE L2 -1172 2142 1807 1571 234 47 20 chrY 4310439 4310884 -20402195 + MSTB2 LTR MaLR 1 457 0 277 205 55 16 chrY 4311350 4311477 -20401602 + (TA)n Simple_repeat Simple_repeat 1 132 0 22 35 0 0 chrY 4312404 4312433 -20400646 + AT_rich Low_complexity Low_complexity 1 29 0 30 27 0 0 chrY 4312469 4312506 -20400573 + AT_rich Low_complexity Low_complexity 1 37 0 2547 111 22 3 chrY 4312925 4313293 -20399786 + THE1C LTR MaLR 1 375 0 3075 164 62 29 chrY 4314005 4314633 -20398446 - MER39B LTR ERV1 -4 649 1 369 267 163 12 chrY 4314788 4314960 -20398119 + MIR SINE MIR 58 255 -7 906 188 37 0 chrY 4315119 4315337 -20397742 - L1MA7 LINE L1 -11 6280 6055 239 262 0 0 chrY 4315463 4315524 -20397555 + MIR SINE MIR 199 259 -3 1607 143 57 0 chrY 4315588 4315853 -20397226 + MER7A DNA MER2_type 1 278 -68 531 174 54 0 chrY 4315945 4316037 -20397042 + MER7A DNA MER2_type 239 335 -1 27305 140 18 57 chrY 4316581 4322987 -20390092 - L1PA7 LINE L1 -1 6153 13 327 187 88 0 chrY 4322985 4323076 -20390003 - L1M4 LINE L1 -807 5339 5241 * 267 324 43 22 chrY 4323960 4324099 -20388980 - MIR3 SINE MIR -14 194 53 31 26 0 0 chrY 4324723 4324761 -20388318 + AT_rich Low_complexity Low_complexity 1 38 0 351 282 6 61 chrY 4325967 4326130 -20386949 - MER20 DNA MER1_type -64 155 2 190 268 0 54 chrY 4326770 4326826 -20386253 - MIR SINE MIR -140 122 70 1307 92 10 10 chrY 4327953 4328159 -20384920 - L1PA8A LINE L1 -223 6223 6018 39542 44 23 1 chrY 4328166 4334181 -20378898 + L1PA3 LINE L1 8 6155 0 19546 145 15 96 chrY 4334186 4336861 -20376218 - L1PA8A LINE L1 -416 6030 3575 2086 127 105 8 chrY 4336861 4337262 -20375817 - LTR7 LTR ERV1 -10 440 1 19546 145 15 96 chrY 4337262 4339473 -20373606 - L1PA8A LINE L1 -2871 3575 1187 4880 160 25 25 chrY 4339477 4340412 -20372667 - L1PA8A LINE L1 -4736 1139 205 313 281 116 30 chrY 4342038 4342202 -20370877 - MIR SINE MIR 0 262 85 1951 157 0 37 chrY 4342363 4342688 -20370391 - AluSq SINE Alu 0 313 1 221 335 40 40 chrY 4342801 4342953 -20370126 - MIR3 SINE MIR -27 181 30 184 333 0 19 chrY 4343197 4343251 -20369828 - MIR3 SINE MIR -13 195 143 421 341 52 6 chrY 4344665 4344838 -20368241 - MIR SINE MIR -10 252 72 227 328 42 25 chrY 4345260 4345379 -20367700 - MIR SINE MIR -56 206 86 273 282 28 0 chrY 4345793 4345864 -20367215 + GA-rich Low_complexity Low_complexity 6 78 0 2158 97 0 7 chrY 4347410 4347733 -20365346 + AluSc SINE Alu 1 309 0 304 282 32 34 chrY 4347779 4347897 -20365182 + MER5A DNA MER1_type 21 128 -50 28 29 0 0 chrY 4347897 4347932 -20365147 + AT_rich Low_complexity Low_complexity 1 35 0 425 155 0 0 chrY 4347940 4348024 -20365055 - L1MA7 LINE L1 -19 6272 6189 427 245 0 0 chrY 4348024 4348126 -20364953 + L1MA5 LINE L1 5795 5896 -404 375 277 40 0 chrY 4350934 4351035 -20362044 + MIR SINE MIR 88 192 -70 272 26 0 26 chrY 4351536 4351574 -20361505 + (TTTTA)n Simple_repeat Simple_repeat 3 39 0 972 338 57 7 chrY 4352053 4352511 -20360568 + L1M2 LINE L1 1 481 -6368 2804 290 68 21 chrY 4352835 4353697 -20359382 + L1M2 LINE L1 662 1581 -5268 243 0 0 0 chrY 4353697 4353724 -20359355 + (TG)n Simple_repeat Simple_repeat 2 28 0 2804 290 68 21 chrY 4353724 4353882 -20359197 + L1M2 LINE L1 1581 1730 -5119 6782 39 1 7 chrY 4354637 4355925 -20357154 - L1P2 LINE L1 -377 5778 4501 702 242 108 0 chrY 4355929 4356160 -20356919 + L1PA15 LINE L1 2584 2839 -4010 5040 122 2 1 chrY 4356162 4356996 -20356083 - L1P LINE L1 -2396 3750 2916 10432 104 8 0 chrY 4356996 4359334 -20353745 + L1PA7 LINE L1 3809 6153 -1 489 157 172 8 chrY 4359639 4359773 -20353306 + MER53 DNA DNA 1 156 -33 2483 87 55 11 chrY 4359786 4360200 -20352879 + L1PA7 LINE L1 5752 6154 0 1174 267 8 3 chrY 4360204 4360560 -20352519 + L1PA15 LINE L1 2832 3189 -3660 * 3880 209 15 25 chrY 4360553 4360930 -20352149 + L1PA15 LINE L1 5931 6310 -558 2212 89 14 0 chrY 4360930 4361210 -20351869 + AluY SINE Alu 1 284 -27 3880 209 15 25 chrY 4361210 4361780 -20351299 + L1PA15 LINE L1 6310 6868 0 994 283 101 42 chrY 4361771 4362123 -20350956 + L1M4c LINE L1 820 1150 -5234 * 1273 272 3 3 chrY 4362123 4362424 -20350655 + AluJo SINE Alu 1 301 -11 994 283 101 42 chrY 4362424 4363037 -20350042 + L1M4c LINE L1 1150 1842 -4542 360 260 65 53 chrY 4363054 4363223 -20349856 + L1M4c LINE L1 1965 2135 -4249 4394 132 53 12 chrY 4363256 4364062 -20349017 - L1PA8 LINE L1 -1 6171 5333 2965 88 13 119 chrY 4364062 4364320 -20348759 + HUERS-P1 LTR ERV1 3649 3933 -2330 2028 160 7 0 chrY 4364320 4364626 -20348453 + AluSx SINE Alu 1 308 -4 2965 88 13 119 chrY 4364626 4364660 -20348419 + HUERS-P1 LTR ERV1 3933 3969 -2294 1866 174 3 0 chrY 4364660 4364959 -20348120 + AluSg SINE Alu 6 305 -5 2965 88 13 119 chrY 4364959 4365232 -20347847 + HUERS-P1 LTR ERV1 3969 4148 -2115 2120 137 0 0 chrY 4365232 4365525 -20347554 + AluSg SINE Alu 1 293 -17 2965 88 13 119 chrY 4365525 4365571 -20347508 + HUERS-P1 LTR ERV1 4148 4197 -2066 771 239 0 0 chrY 4365574 4365729 -20347350 + AluJb SINE Alu 140 294 -18 250 261 45 3 chrY 4365742 4365866 -20347213 - MLT1E LTR MaLR -216 410 277 442 244 114 0 chrY 4365881 4366004 -20347075 - MLT1E LTR MaLR -434 159 23 1598 146 4 0 chrY 4366559 4366805 -20346274 + HERVS71 LTR ERV1 2692 2938 -6040 * 20755 183 17 4 chrY 4366802 4366828 -20346251 + HERVS71 LTR ERV1 5174 5198 -3780 3378 87 29 16 chrY 4366828 4367312 -20345767 + LTR2B LTR ERV1 1 490 0 20755 183 17 4 chrY 4367312 4370973 -20342106 + HERVS71 LTR ERV1 5198 8909 -69 2046 115 37 21 chrY 4370973 4371319 -20341760 + LTR6A LTR ERV1 1 316 -248 4397 65 7 0 chrY 4371319 4371935 -20341144 - L1P LINE L1 -1324 4822 4203 1148 203 0 5 chrY 4372288 4372485 -20340594 + AluJo SINE Alu 3 198 -114 438 175 0 12 chrY 4373226 4373306 -20339773 - AluS SINE Alu -225 87 9 1430 174 48 45 chrY 4373318 4373507 -20339572 - AluJo SINE Alu 0 312 120 2186 142 0 0 chrY 4373507 4373817 -20339262 - AluSx SINE Alu -2 310 1 1430 174 48 45 chrY 4373817 4373938 -20339141 - AluJo SINE Alu -192 120 1 1674 222 109 36 chrY 4373986 4374455 -20338624 - MLT2B1 LTR ERVL -15 505 3 616 198 9 0 chrY 4374457 4374573 -20338506 + MLT1D LTR MaLR 389 505 0 292 158 13 13 chrY 4374910 4374986 -20338093 - MER96B DNA MER1_type? -246 171 96 2121 94 3 26 chrY 4375176 4375485 -20337594 + AluSp SINE Alu 1 302 -11 1308 128 15 5 chrY 4375502 4375705 -20337374 + AluSx SINE Alu 6 210 -102 342 120 0 0 chrY 4375705 4375755 -20337324 + LTR22 LTR ERVK 1 50 -530 2821 182 19 39 chrY 4375755 4376343 -20336736 + LTR22 LTR ERVK 5 580 0 725 150 17 0 chrY 4376360 4376480 -20336599 + AluSx SINE Alu 189 310 -2 2282 83 0 0 chrY 4376577 4376867 -20336212 - AluY SINE Alu -13 298 9 327 145 16 0 chrY 4377211 4377273 -20335806 + MER96B DNA MER1_type? 307 369 -48 2737 92 102 0 chrY 4377340 4377743 -20335336 - MLT2A1 LTR ERVL 0 444 1 4084 73 60 0 chrY 4377743 4378291 -20334788 - HERVL-A1 LTR ERVL 0 5654 5074 1299 150 0 61 chrY 4378291 4378450 -20334629 - AluSx SINE Alu -20 292 152 1981 138 0 3 chrY 4378450 4378748 -20334331 - AluSq SINE Alu -16 297 1 1299 150 0 61 chrY 4378748 4378834 -20334245 - AluSx SINE Alu -160 152 62 17912 94 5 2 chrY 4378834 4381162 -20331917 - HERVL LTR ERVL -566 5088 2754 768 129 26 13 chrY 4381162 4381317 -20331762 + CT-rich Low_complexity Low_complexity 3 159 0 2217 104 0 0 chrY 4381319 4381626 -20331453 - AluY SINE Alu -4 307 1 1881 176 30 30 chrY 4381645 4382008 -20331071 + THE1B LTR MaLR 2 364 0 322 271 0 62 chrY 4382056 4382152 -20330927 - L1MC4 LINE L1 -1339 6703 6614 220 138 0 52 chrY 4382152 4382210 -20330869 + (CATATA)n Simple_repeat Simple_repeat 6 60 0 446 232 32 32 chrY 4382230 4382355 -20330724 - FRAM SINE Alu -46 130 6 284 268 31 10 chrY 4382360 4382457 -20330622 - L1M4 LINE L1 -874 5272 5174 1339 145 21 21 chrY 4382491 4382733 -20330346 - AluSg SINE Alu -10 300 59 702 200 72 90 chrY 4382761 4382814 -20330265 - L1M4 LINE L1 -1014 5132 5080 1407 161 26 71 chrY 4382814 4383124 -20329955 + AluSq SINE Alu 1 296 -17 702 200 72 90 chrY 4383124 4383360 -20329719 - L1M4 LINE L1 -1066 5080 4848 715 221 221 5 chrY 4383364 4383572 -20329507 + AluJb SINE Alu 5 257 -55 1719 145 39 0 chrY 4383592 4383874 -20329205 - AluSx SINE Alu -19 293 1 1901 138 0 0 chrY 4383920 4384217 -20328862 + AluSx SINE Alu 15 311 -1 2029 127 3 0 chrY 4388281 4388588 -20324491 + AluSx SINE Alu 1 308 -4 264 265 118 0 chrY 4388715 4388817 -20324262 - L2 LINE L2 -5 3308 3195 216 330 110 9 chrY 4389296 4389405 -20323674 + MIR3 SINE MIR 66 185 -23 183 186 0 0 chrY 4389524 4389567 -20323512 + (TATATG)n Simple_repeat Simple_repeat 4 46 0 384 216 191 56 chrY 4389636 4389798 -20323281 - MER3 DNA MER1_type -17 192 9 1105 236 109 11 chrY 4389848 4390123 -20322956 + AluJo SINE Alu 1 302 0 1722 167 0 13 chrY 4390142 4390447 -20322632 + AluSx SINE Alu 3 303 -9 249 312 12 4 chrY 4390690 4390777 -20322302 + MIR SINE MIR 60 144 -64 612 124 21 0 chrY 4392094 4392191 -20320888 + AluSc SINE Alu 206 304 -5 1460 175 11 11 chrY 4392191 4392494 -20320585 + AluSq SINE Alu 21 323 0 631 248 23 61 chrY 4392576 4392790 -20320289 + MER20 DNA MER1_type 1 206 -13 1699 185 36 15 chrY 4392818 4393148 -20319931 + MER1B DNA MER1_type 1 337 0 1133 178 23 56 chrY 4394136 4394440 -20318639 - AluJo SINE Alu -7 305 12 1939 112 0 48 chrY 4394603 4394915 -20318164 - AluSg SINE Alu -13 297 1 268 257 82 105 chrY 4394959 4395130 -20317949 - L1ME1 LINE L1 -17 6149 5983 2343 218 26 14 chrY 4395178 4395677 -20317402 + LTR10B LTR ERV1 1 505 0 2713 118 56 12 chrY 4396758 4397172 -20315907 - LTR3 LTR ERVK 0 432 1 303 140 80 0 chrY 4397579 4397629 -20315450 - AluSc SINE Alu -10 289 236 4185 111 64 107 chrY 4397629 4398492 -20314587 - LTR12 LTR ERV1 0 826 1 764 210 52 52 chrY 4398572 4398858 -20314221 - pTR5 LTR ERV1 -1410 1028 743 1682 133 0 0 chrY 4398858 4399099 -20313980 - AluSx SINE Alu -71 241 1 1989 114 10 23 chrY 4399241 4399549 -20313530 - AluY SINE Alu -7 304 1 1196 217 72 40 chrY 4399573 4399850 -20313229 - AluJo SINE Alu -14 288 3 2392 77 3 3 chrY 4400039 4400350 -20312729 + AluY SINE Alu 1 311 0 1838 133 65 30 chrY 4401030 4401149 -20311930 + THE1B LTR MaLR 14 127 -237 1864 161 3 0 chrY 4401149 4401448 -20311631 - AluSg SINE Alu -10 300 1 1838 133 65 30 chrY 4401448 4401667 -20311412 + THE1B LTR MaLR 127 364 0 27 0 0 0 chrY 4401942 4401969 -20311110 + AT_rich Low_complexity Low_complexity 1 27 0 1683 166 11 0 chrY 4402319 4402633 -20310446 - AluSg SINE Alu 0 317 1 1730 179 7 0 chrY 4402669 4402960 -20310119 - AluSg SINE Alu -17 293 1 1590 162 20 20 chrY 4402960 4403257 -20309822 - AluSq SINE Alu -16 297 1 3317 198 130 28 chrY 4404080 4405458 -20307621 - MER52A LTR ERV1 0 1755 1 236 222 0 37 chrY 4406194 4406248 -20306831 + AluSg/x SINE Alu 116 167 -133 3734 94 322 0 chrY 4406248 4406873 -20306206 + LTR12 LTR ERV1 1 826 0 1715 137 7 28 chrY 4406873 4407158 -20305921 + AluSp SINE Alu 31 309 -4 623 208 58 79 chrY 4408091 4408202 -20304877 - L1MB8 LINE L1 -12 6166 6054 1920 139 3 3 chrY 4408202 4408505 -20304574 - AluSx SINE Alu -9 303 1 623 208 58 79 chrY 4408505 4408633 -20304446 - L1MB8 LINE L1 -124 6054 5932 1863 147 10 3 chrY 4408633 4408932 -20304147 - AluSx SINE Alu -11 301 1 263 132 0 0 chrY 4409106 4409144 -20303935 + MIR SINE MIR 118 155 -107 453 262 60 47 chrY 4409457 4409606 -20303473 + MER20 DNA MER1_type 66 216 -3 712 177 15 23 chrY 4410451 4410581 -20302498 - FLAM_C SINE Alu -10 133 5 830 189 36 106 chrY 4410586 4410887 -20302192 - AluJb SINE Alu -14 298 19 297 188 59 71 chrY 4410901 4410916 -20302163 - L1MA10 LINE L1 -82 6252 6238 893 268 70 41 chrY 4410916 4411304 -20301775 - L1ME1 LINE L1 -82 6084 5686 410 172 0 0 chrY 4411311 4411375 -20301704 - MER5A DNA MER1_type 0 189 126 885 211 119 8 chrY 4411387 4411648 -20301431 + AluJo SINE Alu 13 302 -10 401 305 21 28 chrY 4411660 4411801 -20301278 - MER5A DNA MER1_type -49 140 1 886 235 119 16 chrY 4412658 4412977 -20300102 - L1MB7 LINE L1 0 6184 5833 1661 181 7 0 chrY 4413021 4413308 -20299771 + AluSx SINE Alu 1 289 -23 1387 244 33 17 chrY 4414006 4414367 -20298712 - MLT1D LTR MaLR -2 503 137 2605 84 109 227 chrY 4414382 4415179 -20297900 - LTR12 LTR ERV1 -11 703 1 728 184 0 22 chrY 4415179 4415315 -20297764 - MLT1D LTR MaLR -371 134 2 1577 146 4 22 chrY 4415394 4415669 -20297410 - AluSp SINE Alu -2 311 42 1657 127 23 43 chrY 4415700 4416000 -20297079 + AluY SINE Alu 1 294 -17 198 0 0 0 chrY 4416074 4416096 -20296983 + (ATTG)n Simple_repeat Simple_repeat 3 24 0 576 154 0 86 chrY 4416113 4416230 -20296849 - FLAM_C SINE Alu -33 110 4 256 202 124 22 chrY 4416687 4416776 -20296303 - MLT1I LTR MaLR 0 409 312 1770 141 7 0 chrY 4416972 4417277 -20295802 + AluSq SINE Alu 1 307 0 1635 157 11 0 chrY 4417612 4417892 -20295187 + AluSx SINE Alu 6 288 -24 183 337 23 23 chrY 4418444 4418530 -20294549 - L2 LINE L2 -1526 1788 1703 670 248 7 7 chrY 4418569 4418714 -20294365 + FRAM SINE Alu 2 146 -30 815 232 11 11 chrY 4419148 4419325 -20293754 + MER8 DNA MER2_type 1 177 -62 250 178 22 0 chrY 4419511 4419556 -20293523 + MER3 DNA MER1_type 7 52 -157 212 373 32 0 chrY 4419620 4419746 -20293333 + (CACGC)n Simple_repeat Simple_repeat 4 133 0 1982 221 54 4 chrY 4420139 4420623 -20292456 - L1MB2 LINE L1 0 6171 5664 223 231 17 26 chrY 4420651 4420768 -20292311 + CT-rich Low_complexity Low_complexity 2 117 0 233 293 0 13 chrY 4420776 4420851 -20292228 + T-rich Low_complexity Low_complexity 3 76 0 402 217 18 44 chrY 4420852 4421142 -20291937 + CT-rich Low_complexity Low_complexity 1 282 0 845 238 24 24 chrY 4421142 4421394 -20291685 - AluJo SINE Alu -14 298 47 1444 136 15 133 chrY 4422056 4422195 -20290884 - MER4A LTR ERV1 0 664 585 1949 138 3 0 chrY 4422195 4422491 -20290588 - AluSx SINE Alu -15 297 1 1444 136 15 133 chrY 4422491 4422683 -20290396 - MER4A LTR ERV1 -79 585 372 462 135 112 0 chrY 4422735 4422824 -20290255 - MER4A LTR ERV1 -565 99 1 3194 136 83 14 chrY 4422825 4423414 -20289665 - MER4A-int LTR ERV1 0 6598 5969 1953 118 13 30 chrY 4424119 4424424 -20288655 + AluY SINE Alu 1 300 -11 290 62 0 62 chrY 4426481 4426529 -20286550 - L1PA5 LINE L1 -3 6151 6107 * 30780 71 8 1 chrY 4426527 4430531 -20282548 - L1P LINE L1 -2105 4041 11 1320 194 7 7 chrY 4431503 4431776 -20281303 - BaEV-int LTR ERV1 -4878 1771 1499 * 2429 233 19 2 chrY 4431770 4432289 -20280790 + BaEV-int LTR ERV1 2629 3156 -3740 4417 272 36 45 chrY 4432460 4434131 -20278948 + BaEV-int LTR ERV1 4991 6646 -3 3571 203 23 67 chrY 4434132 4435146 -20277933 - LTR5 LTR ERVK 0 969 1 10341 177 5 8 chrY 4435151 4436919 -20276160 - HERVK LTR ERVK -5 7238 5533 273 319 39 39 chrY 4436887 4437069 -20276010 - HERVK LTR ERVK -735 5181 5000 * 11552 108 4 2 chrY 4437163 4438774 -20274305 - HERVK LTR ERVK -1720 5523 3911 11508 198 15 24 chrY 4438766 4441076 -20272003 - HERVK LTR ERVK -4424 2819 531 * 1233 155 50 17 chrY 4441076 4441359 -20271720 + LTR10A LTR ERV1 290 609 0 675 291 0 0 chrY 4441372 4441547 -20271532 + BaEV-int LTR ERV1 7388 7562 -223 370 179 0 51 chrY 4441565 4441643 -20271436 - MER4A LTR ERV1 -203 461 388 1947 129 56 0 chrY 4441800 4442087 -20270992 - AluSx SINE Alu -9 303 1 207 0 0 0 chrY 4442566 4442589 -20270490 + (TC)n Simple_repeat Simple_repeat 2 24 0 2021 134 17 0 chrY 4443127 4443417 -20269662 - AluSq SINE Alu -18 295 1 365 111 0 0 chrY 4443428 4443482 -20269597 - AluSp/q SINE Alu -6 297 244 1547 227 20 6 chrY 4443617 4443969 -20269110 - MLT1B LTR MaLR -16 374 18 1188 170 65 0 chrY 4443983 4444213 -20268866 + L1MB7 LINE L1 5931 6175 -9 248 203 78 0 chrY 4445566 4445630 -20267449 - L1MB8 LINE L1 -13 6165 6097 432 227 10 0 chrY 4445848 4445945 -20267134 - L1MB1 LINE L1 -159 6009 5912 196 119 48 24 chrY 4445947 4445989 -20267090 + MIR SINE MIR 184 226 -36 203 0 0 36 chrY 4446016 4446044 -20267035 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 1814 165 0 0 chrY 4446045 4446324 -20266755 - AluSx SINE Alu -33 279 1 315 179 0 0 chrY 4447296 4447363 -20265716 + GA-rich Low_complexity Low_complexity 1 67 0 1694 182 0 0 chrY 4447365 4447640 -20265439 - AluSx SINE Alu -36 276 2 240 220 18 101 chrY 4447644 4447753 -20265326 - MER69 DNA AcHobo -264 2262 2163 242 229 0 0 chrY 4448076 4448124 -20264955 - MER69 DNA AcHobo -841 385 338 328 175 0 16 chrY 4449752 4449815 -20263264 + MER20 DNA MER1_type 112 173 -46 860 138 0 0 chrY 4449988 4450104 -20262975 - AluSp SINE Alu -197 116 1 375 41 0 0 chrY 4451635 4451684 -20261395 + (TG)n Simple_repeat Simple_repeat 1 49 0 1701 168 7 11 chrY 4451686 4451966 -20261113 - AluSx SINE Alu -33 279 1 480 235 0 20 chrY 4453152 4453254 -20259825 - MER20 DNA MER1_type -114 105 6 2043 121 4 0 chrY 4454651 4454962 -20258117 - AluSg SINE Alu 0 314 3 975 201 66 8 chrY 4455365 4455419 -20257660 - MSTA LTR MaLR -173 253 204 1828 153 39 0 chrY 4455419 4455700 -20257379 - AluSx SINE Alu -20 292 1 975 201 66 8 chrY 4455700 4455884 -20257195 - MSTA LTR MaLR -222 204 3 832 208 104 6 chrY 4456571 4456754 -20256325 - MER3 DNA MER1_type -1 208 8 239 281 144 50 chrY 4456893 4457032 -20256047 + HAL1 LINE L1 1383 1534 -973 618 290 79 105 chrY 4457184 4457905 -20255174 + HAL1 LINE L1 1618 2313 -194 1248 207 32 25 chrY 4457905 4458206 -20254873 + AluJo SINE Alu 1 303 0 618 290 79 105 chrY 4458206 4458396 -20254683 + HAL1 LINE L1 2313 2506 -1 1941 123 3 72 chrY 4458462 4458794 -20254285 + MER1B DNA MER1_type 31 339 0 517 226 19 0 chrY 4458852 4458958 -20254121 - MER20 DNA MER1_type -111 108 1 201 261 108 0 chrY 4459474 4459539 -20253540 - MIR3 SINE MIR -28 180 109 641 210 0 0 chrY 4460623 4460747 -20252332 + FLAM_C SINE Alu 2 125 -8 743 238 53 5 chrY 4461059 4461265 -20251814 + MER20 DNA MER1_type 1 216 -3 190 254 111 0 chrY 4461344 4461407 -20251672 + L2 LINE L2 2267 2336 -978 1512 197 14 24 chrY 4461974 4462269 -20250810 + AluJo SINE Alu 1 292 -20 1762 165 62 9 chrY 4462552 4462874 -20250205 - MER47A DNA MER2_type -27 339 1 966 259 139 32 chrY 4462878 4463027 -20250052 - L1MD2 LINE L1 -227 6132 6000 1846 156 6 29 chrY 4463027 4463342 -20249737 - AluSq SINE Alu -5 308 1 966 259 139 32 chrY 4463342 4463566 -20249513 - L1MD2 LINE L1 -359 6000 5719 1922 149 0 17 chrY 4464113 4464443 -20248636 + AluJb SINE Alu 5 312 0 414 209 70 31 chrY 4464613 4464707 -20248372 + MER3 DNA MER1_type 76 178 -31 1722 104 108 4 chrY 4464707 4464958 -20248121 + AluY SINE Alu 21 297 -14 414 209 70 31 chrY 4464958 4464992 -20248087 + MER3 DNA MER1_type 178 209 0 550 217 133 59 chrY 4465135 4465338 -20247741 + MER20 DNA MER1_type 2 219 0 666 214 0 0 chrY 4465890 4466007 -20247072 - FRAM SINE Alu -14 162 46 2514 78 3 0 chrY 4466280 4466589 -20246490 - AluY SINE Alu -1 310 1 837 234 155 71 chrY 4467152 4467506 -20245573 + MLT1B LTR MaLR 1 384 -6 1698 193 24 26 chrY 4467928 4468306 -20244773 - MLT1C LTR MaLR -90 377 1 639 0 0 0 chrY 4468922 4468993 -20244086 + (TTTC)n Simple_repeat Simple_repeat 2 72 0 23 0 0 0 chrY 4469102 4469125 -20243954 + AT_rich Low_complexity Low_complexity 1 23 0 1956 114 30 3 chrY 4469126 4469424 -20243655 - L1PA10 LINE L1 -6 6162 5857 872 228 185 26 chrY 4470634 4471024 -20242055 - MLT1C LTR MaLR -15 452 1 1188 118 0 12 chrY 4471317 4471487 -20241592 - AluSq SINE Alu -14 299 132 189 0 0 0 chrY 4471510 4471531 -20241548 + (T)n Simple_repeat Simple_repeat 1 21 0 2269 99 3 17 chrY 4472156 4472458 -20240621 + AluSp SINE Alu 2 299 -14 1798 173 0 7 chrY 4472866 4473161 -20239918 + AluSx SINE Alu 1 293 -19 918 177 72 29 chrY 4473561 4473770 -20239309 - MLT1F1 LTR MaLR 0 567 350 874 214 85 10 chrY 4474136 4474337 -20238742 + AluJo SINE Alu 85 300 -12 197 317 69 10 chrY 4474951 4475052 -20238027 - MIR3 SINE MIR -11 197 91 189 175 0 0 chrY 4475363 4475403 -20237676 + T-rich Low_complexity Low_complexity 5 44 0 299 170 0 19 chrY 4475461 4475514 -20237565 + CT-rich Low_complexity Low_complexity 3 54 0 311 119 0 34 chrY 4475516 4475575 -20237504 + (TCCCC)n Simple_repeat Simple_repeat 3 59 0 1897 161 0 0 chrY 4476341 4476632 -20236447 - AluSx SINE Alu -21 291 1 2390 93 0 0 chrY 4477070 4477371 -20235708 + AluY SINE Alu 1 301 -10 462 271 173 32 chrY 4477915 4478284 -20234795 - L2 LINE L2 -89 3224 2804 516 251 103 56 chrY 4478303 4478696 -20234383 - LTR15 LTR ERV1 -4 530 149 230 306 89 8 chrY 4479147 4479271 -20233808 - L2 LINE L2 -939 2375 2242 1312 218 150 8 chrY 4480157 4480538 -20232541 - L1MB4 LINE L1 -176 6004 5570 597 309 65 0 chrY 4480618 4480819 -20232260 + MER58B DNA MER1_type 15 228 -113 1434 230 3 3 chrY 4480884 4481175 -20231904 + AluJb SINE Alu 6 296 -16 23 33 0 0 chrY 4481639 4481669 -20231410 + AT_rich Low_complexity Low_complexity 1 30 0 4513 45 2 2 chrY 4482040 4482598 -20230481 + L1P LINE L1 4839 5396 -750 232 176 0 20 chrY 4483160 4483199 -20229880 + (TG)n Simple_repeat Simple_repeat 2 41 -10 1661 183 7 3 chrY 4483199 4483484 -20229595 - AluJb SINE Alu -26 286 1 232 176 0 20 chrY 4483484 4483495 -20229584 + (TG)n Simple_repeat Simple_repeat 41 51 0 211 323 31 21 chrY 4483674 4483770 -20229309 - MIR SINE MIR -143 119 23 2097 122 17 3 chrY 4485486 4485782 -20227297 + AluSp SINE Alu 1 300 -13 190 300 169 50 chrY 4486132 4486292 -20226787 + MIR SINE MIR 34 212 -50 1870 143 27 7 chrY 4486386 4486687 -20226392 + AluSq SINE Alu 1 307 -6 813 255 28 5 chrY 4486869 4487081 -20225998 - MER20 DNA MER1_type 0 219 3 388 237 86 0 chrY 4487525 4487618 -20225461 + MER58A DNA MER1_type 1 101 -6 2267 168 66 16 chrY 4487669 4488110 -20224969 + MSTA-int LTR MaLR 181 643 -1008 2057 226 20 29 chrY 4488385 4488841 -20224238 + MSTA-int LTR MaLR 650 1101 -550 1162 244 36 32 chrY 4488841 4489332 -20223747 + LTR10B LTR ERV1 1 547 0 2351 162 134 19 chrY 4489332 4489802 -20223277 + MSTA-int LTR MaLR 1097 1620 -31 2056 148 65 35 chrY 4489821 4490220 -20222859 + MSTA LTR MaLR 1 411 -17 22 0 0 0 chrY 4491222 4491244 -20221835 + AT_rich Low_complexity Low_complexity 1 22 0 665 214 0 0 chrY 4491331 4491448 -20221631 - FLAM_C SINE Alu -16 117 1 351 228 128 20 chrY 4491778 4491927 -20221152 - MLT1F LTR MaLR -109 433 269 457 158 13 0 chrY 4492000 4492076 -20221003 - MER20 DNA MER1_type -113 106 30 329 278 35 0 chrY 4492659 4492774 -20220305 + L1M4 LINE L1 5714 5832 -342 1053 139 6 0 chrY 4492774 4492932 -20220147 + AluY SINE Alu 1 159 -152 367 113 14 99 chrY 4492937 4493008 -20220071 + FLAM SINE Alu 66 117 -16 186 298 0 0 chrY 4494033 4494080 -20218999 - L2 LINE L2 -1 3271 3225 315 278 60 60 chrY 4494245 4494396 -20218683 - MLT1J LTR MaLR -38 473 323 180 300 57 29 chrY 4495707 4495777 -20217302 - L3 LINE CR1 -1495 82 11 2011 149 13 0 chrY 4496034 4496342 -20216737 + AluSx SINE Alu 1 312 0 42 36 0 0 chrY 4496838 4496894 -20216185 + AT_rich Low_complexity Low_complexity 1 56 0 1064 188 87 37 chrY 4498277 4498575 -20214504 - L1MB8 LINE L1 -281 5897 5585 544 250 100 0 chrY 4499252 4499412 -20213667 - MER58B DNA MER1_type -3 338 163 6756 94 18 88 chrY 4499469 4500511 -20212568 - L1PA8 LINE L1 0 6172 5141 1242 214 122 67 chrY 4501125 4501559 -20211520 - MLT1C LTR MaLR 0 467 10 1487 179 77 4 chrY 4502661 4502934 -20210145 - AluJb SINE Alu -19 293 1 2154 112 3 0 chrY 4503134 4503438 -20209641 + AluY SINE Alu 1 305 -6 463 149 0 0 chrY 4503438 4503512 -20209567 + AluS SINE Alu 232 305 -5 1491 229 7 0 chrY 4505004 4505305 -20207774 - AluJo SINE Alu -9 303 1 1436 283 14 13 chrY 4505383 4505872 -20207207 - L1ME1 LINE L1 -104 6062 5569 490 92 27 71 chrY 4506439 4506623 -20206456 + (TAGA)n Simple_repeat Simple_repeat 2 177 0 352 126 34 86 chrY 4506641 4506816 -20206263 + (TAGA)n Simple_repeat Simple_repeat 4 169 0 1756 219 12 17 chrY 4507396 4507807 -20205272 + L1MB3 LINE L1 5733 6141 -42 1119 215 16 12 chrY 4507807 4508058 -20205021 + AluJo SINE Alu 42 293 -19 762 290 6 72 chrY 4508341 4508528 -20204551 + L1MD1 LINE L1 5704 5863 -379 17585 97 23 0 chrY 4508528 4511690 -20201389 + L1PA7 LINE L1 2952 6153 -1 762 290 6 72 chrY 4511690 4511823 -20201256 + L1MD1 LINE L1 5863 6003 -239 627 251 121 20 chrY 4512271 4512470 -20200609 - MER20 DNA MER1_type 0 219 1 893 150 30 129 chrY 4512937 4513170 -20199909 + MER2 DNA MER2_type 1 210 -135 640 270 7 0 chrY 4513319 4513467 -20199612 - MER58A DNA MER1_type 0 158 10 788 199 31 6 chrY 4514223 4514384 -20198695 + MER20 DNA MER1_type 55 219 0 1519 238 58 0 chrY 4514996 4515341 -20197738 - MLT1A1 LTR MaLR 0 365 1 246 348 0 0 chrY 4515362 4515431 -20197648 - MIR3 SINE MIR -16 192 124 211 307 114 2 chrY 4515530 4515672 -20197407 - MIR SINE MIR -58 150 3 2102 157 0 0 chrY 4518119 4518425 -20194654 - AluSx SINE Alu -6 306 1 1398 197 7 21 chrY 4518972 4519251 -20193828 + AluJb SINE Alu 1 275 -37 414 0 0 0 chrY 4519260 4519306 -20193773 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 23 0 0 0 chrY 4519935 4519958 -20193121 + AT_rich Low_complexity Low_complexity 1 23 0 830 203 14 0 chrY 4519959 4520107 -20192972 - AluJb SINE Alu -24 288 139 1506 218 0 0 chrY 4520398 4520678 -20192401 - AluJb SINE Alu -32 280 1 2561 109 56 6 chrY 4520861 4521220 -20191859 - MER51B LTR ERV1 0 377 1 7854 162 66 54 chrY 4521220 4522869 -20190210 - MER51B-int LTR ERV1 0 7816 5837 312 29 0 0 chrY 4522869 4522903 -20190176 - L1PA3 LINE L1 -19 6136 6103 7854 162 66 54 chrY 4522903 4523477 -20189602 - MER51B-int LTR ERV1 -1979 5837 5272 2396 73 3 3 chrY 4523488 4523791 -20189288 - AluY SINE Alu -8 303 1 1593 111 80 10 chrY 4523836 4524198 -20188881 - LTR10C-int LTR ERV1 -2572 2645 2214 * 2091 155 99 73 chrY 4524180 4524616 -20188463 - LTR10C-int LTR ERV1 -3497 4040 3586 7095 67 35 3 chrY 4524616 4525669 -20187410 - L1PA6 LINE L1 -2 6152 5078 2091 155 99 73 chrY 4525669 4525755 -20187324 - LTR10C-int LTR ERV1 -3951 3586 3504 * 3599 128 86 67 chrY 4525753 4525947 -20187132 - LTR10C-int LTR ERV1 -4501 3315 3126 2205 110 13 7 chrY 4525947 4526257 -20186822 + AluSx SINE Alu 1 312 0 3599 128 86 67 chrY 4526257 4526861 -20186218 - LTR10C-int LTR ERV1 -4690 3126 2497 2649 118 22 49 chrY 4526859 4526952 -20186127 - LTR10C-int LTR ERV1 -5491 2325 2231 * 1986 131 0 3 chrY 4526952 4527243 -20185836 + AluSq SINE Alu 1 290 -23 2649 118 22 49 chrY 4527243 4527702 -20185377 - LTR10C-int LTR ERV1 -5585 2231 1788 492 165 0 128 chrY 4527702 4527835 -20185244 - MER4A LTR ERV1 -147 517 402 7883 153 47 23 chrY 4527839 4528143 -20184936 - LTR10C-int LTR ERV1 -6354 1462 1167 4761 61 0 2 chrY 4528143 4528735 -20184344 - LTR10C LTR ERV1 0 591 1 7883 153 47 23 chrY 4528735 4529858 -20183221 - LTR10C-int LTR ERV1 -6649 1167 1 1983 135 70 11 chrY 4529858 4529940 -20183139 - MER51B LTR ERV1 0 377 301 5992 80 10 18 chrY 4529940 4530726 -20182353 + LTR17 LTR ERV1 1 780 0 1983 135 70 11 chrY 4530726 4530999 -20182080 - MER51B LTR ERV1 -76 301 1 658 290 0 0 chrY 4531202 4531364 -20181715 + FRAM SINE Alu 1 162 -4 1013 228 19 0 chrY 4532118 4532333 -20180746 - MER20 DNA MER1_type 0 219 1 1709 191 73 98 chrY 4532514 4533064 -20180015 - LTR10A LTR ERV1 -61 548 13 12814 172 31 44 chrY 4533076 4537342 -20175737 - Harlequin LTR ERV1 -4 6645 719 4398 225 38 27 chrY 4537393 4538588 -20174491 - HERVI LTR ERV1 -5812 837 499 724 250 52 49 chrY 4538635 4538923 -20174156 - HERVI LTR ERV1 -6360 289 1 1903 169 88 81 chrY 4538932 4539476 -20173603 - LTR10A LTR ERV1 -61 548 1 2084 151 8 48 chrY 4540841 4541219 -20171860 + THE1B LTR MaLR 2 364 0 326 164 9 146 chrY 4541595 4541705 -20171374 + THE1A LTR MaLR 2 96 -259 * 1193 118 0 0 chrY 4541689 4541850 -20171229 - THE1B LTR MaLR -38 326 166 1805 129 11 4 chrY 4542075 4542398 -20170681 - AluSx SINE Alu 0 325 1 1309 223 3 0 chrY 4542421 4542708 -20170371 + AluJo SINE Alu 1 288 -24 1216 204 35 14 chrY 4542920 4543204 -20169875 + AluJo SINE Alu 4 293 -19 21 0 0 0 chrY 4543637 4543658 -20169421 + AT_rich Low_complexity Low_complexity 1 21 0 2218 101 0 10 chrY 4543752 4544087 -20168992 + AluSp SINE Alu 1 313 0 448 250 65 0 chrY 4544958 4545066 -20168013 - MER58A DNA MER1_type -2 222 108 1129 186 45 5 chrY 4545075 4545295 -20167784 - MLT1B LTR MaLR -12 378 150 238 281 16 31 chrY 4545320 4545384 -20167695 - MER58A DNA MER1_type -42 65 3 1358 234 7 7 chrY 4545420 4545706 -20167373 - AluJo SINE Alu -16 286 1 1593 172 11 7 chrY 4547653 4547932 -20165147 - AluSq SINE Alu -33 280 1 1088 233 5 9 chrY 4548915 4549130 -20163949 + MER58A DNA MER1_type 11 224 0 288 53 0 0 chrY 4549172 4549210 -20163869 + (TC)n Simple_repeat Simple_repeat 1 38 0 762 226 80 21 chrY 4549900 4550188 -20162891 + MER33 DNA MER1_type 20 324 0 402 214 0 0 chrY 4550402 4550472 -20162607 + AluJ/FLAM SINE Alu 2 71 -241 433 121 0 0 chrY 4550501 4550559 -20162520 + FLAM SINE Alu 69 126 -17 192 125 0 0 chrY 4550561 4550593 -20162486 + (GGATG)n Simple_repeat Simple_repeat 3 34 0 269 245 0 0 chrY 4550601 4550650 -20162429 + AluSg/x SINE Alu 133 181 -119 263 146 208 31 chrY 4551288 4551384 -20161695 - L1MB5 LINE L1 -112 6062 5950 1956 140 0 0 chrY 4551661 4551961 -20161118 - AluSx SINE Alu -12 300 1 469 302 172 26 chrY 4552312 4552356 -20160723 + L1MD2 LINE L1 5911 5947 -412 1875 147 13 0 chrY 4552356 4552663 -20160416 + AluSq SINE Alu 1 311 -2 469 302 172 26 chrY 4552663 4552996 -20160083 + L1MD2 LINE L1 5947 6343 -16 1347 201 10 30 chrY 4553620 4553923 -20159156 + AluJo SINE Alu 1 297 -15 543 285 7 0 chrY 4553924 4554068 -20159011 - MER82 DNA MER2_type -484 169 25 1754 128 10 20 chrY 4555792 4556089 -20156990 - AluSc SINE Alu 0 309 16 1011 154 44 118 chrY 4556089 4556361 -20156718 + AluJo SINE Alu 44 295 -17 1108 185 142 50 chrY 4556931 4557191 -20155888 + AluJo SINE Alu 1 284 -18 1852 181 127 0 chrY 4557262 4557633 -20155446 - MSTA LTR MaLR 0 428 11 609 261 94 47 chrY 4557653 4558055 -20155024 + L1M4c LINE L1 1116 1536 -4848 244 245 14 150 chrY 4559799 4559946 -20153133 + MER94 DNA DNA 6 132 -2 1927 92 0 51 chrY 4560021 4560333 -20152746 - AluSc SINE Alu 0 298 2 614 200 87 0 chrY 4560778 4560893 -20152186 + FLAM_C SINE Alu 1 125 -8 501 32 0 0 chrY 4560894 4560957 -20152122 + (CA)n Simple_repeat Simple_repeat 2 64 0 1259 176 69 35 chrY 4560961 4561251 -20151828 + AluJo SINE Alu 2 301 -1 1838 140 10 3 chrY 4562320 4562613 -20150466 + AluSq SINE Alu 3 297 -16 367 73 73 30 chrY 4562646 4562810 -20150269 + (TA)n Simple_repeat Simple_repeat 2 172 0 248 121 77 0 chrY 4562839 4562930 -20150149 + (TA)n Simple_repeat Simple_repeat 1 98 0 319 172 0 0 chrY 4562933 4562996 -20150083 - AluJb SINE Alu -185 117 71 712 179 8 8 chrY 4564731 4564854 -20148225 - FLAM_C SINE Alu -19 124 2 428 222 68 8 chrY 4565093 4565210 -20147869 - LTR16B LTR ERVL -26 438 315 1668 158 4 0 chrY 4565241 4565507 -20147572 + AluSx SINE Alu 1 267 -45 672 228 19 13 chrY 4566169 4566245 -20146834 + MER20 DNA MER1_type 3 77 -142 1681 211 18 0 chrY 4566245 4566586 -20146493 - MER7A DNA MER2_type -1 345 1 672 228 19 13 chrY 4566586 4566667 -20146412 + MER20 DNA MER1_type 77 161 -58 395 237 0 0 chrY 4567067 4567143 -20145936 - MER58A DNA MER1_type -30 77 2 1919 128 7 3 chrY 4567418 4567716 -20145363 - AluSq SINE Alu -14 299 1 206 174 22 0 chrY 4568349 4568395 -20144684 + CT-rich Low_complexity Low_complexity 3 49 0 1518 118 10 90 chrY 4571579 4571867 -20141212 - MER4A LTR ERV1 0 664 400 790 227 43 34 chrY 4572230 4572437 -20140642 + AluJo SINE Alu 87 295 -17 598 262 141 48 chrY 4573054 4573531 -20139548 - LTR67 LTR ERVL -8 549 29 6431 139 65 44 chrY 4573954 4575227 -20137852 + HSMAR2 DNA Mariner 1 1300 -2 1653 194 0 0 chrY 4575357 4575651 -20137428 + AluSx SINE Alu 1 294 -18 1107 183 57 57 chrY 4575811 4576074 -20137005 + Tigger3(Golem) DNA MER2_type 2762 3024 -5 595 278 142 27 chrY 4577907 4578317 -20134762 + L2 LINE L2 2840 3296 -17 1256 249 14 7 chrY 4578627 4578904 -20134175 + AluJo SINE Alu 12 290 -22 2406 79 0 3 chrY 4579296 4579599 -20133480 + AluY SINE Alu 1 302 -9 409 171 14 130 chrY 4579790 4579936 -20133143 - L1ME4a LINE L1 -2 6119 5991 1486 184 22 4 chrY 4580127 4580399 -20132680 - AluSx SINE Alu -33 279 3 1638 204 0 19 chrY 4580432 4580741 -20132338 + AluJo SINE Alu 1 303 -9 3311 199 45 10 chrY 4580841 4581528 -20131551 + MER50 LTR ERV1 1 711 -23 1672 187 171 31 chrY 4582831 4583312 -20129767 - LTR10A LTR ERV1 -61 548 1 9274 257 17 27 chrY 4583464 4585814 -20127265 + LTR10A-int LTR ERV1 4320 6647 -2 1950 191 104 48 chrY 4585815 4586334 -20126745 + LTR10A LTR ERV1 1 548 -61 1065 204 18 26 chrY 4586352 4586578 -20126501 - MER58A DNA MER1_type 0 224 1 266 250 10 48 chrY 4587155 4587259 -20125820 - MER58 DNA MER1_type -2216 204 105 1079 205 193 4 chrY 4587272 4587526 -20125553 + AluJb SINE Alu 1 302 0 196 27 54 27 chrY 4587531 4587568 -20125511 + (CAAAAA)n Simple_repeat Simple_repeat 4 41 0 226 268 127 0 chrY 4587570 4587641 -20125438 - MER58 DNA MER1_type -251 90 11 2294 75 7 13 chrY 4588707 4589015 -20124064 + AluY SINE Alu 3 308 -3 1214 122 11 0 chrY 4589024 4589212 -20123867 + AluSg/x SINE Alu 123 312 0 372 22 0 0 chrY 4591281 4591326 -20121753 + (TG)n Simple_repeat Simple_repeat 2 46 0 5711 133 155 13 chrY 4591330 4592090 -20120989 - MER11B LTR ERVK -4 1232 273 2251 91 37 0 chrY 4592090 4592386 -20120693 - AluY SINE Alu -4 307 1 5711 133 155 13 chrY 4592386 4592704 -20120375 - MER11B LTR ERVK -963 273 1 189 0 0 0 chrY 4592792 4592813 -20120266 + (TG)n Simple_repeat Simple_repeat 1 21 0 574 282 52 58 chrY 4593670 4593765 -20119314 + L2 LINE L2 2577 2671 -642 1361 254 25 8 chrY 4593765 4594124 -20118955 - MLT1A1 LTR MaLR 0 365 1 574 282 52 58 chrY 4594124 4594527 -20118552 + L2 LINE L2 2671 3063 -250 934 182 6 12 chrY 4594959 4595124 -20117955 + AluSg/x SINE Alu 135 298 -12 1808 161 22 0 chrY 4595947 4596214 -20116865 + AluSx SINE Alu 1 273 -39 207 0 0 0 chrY 4596799 4596822 -20116257 + (A)n Simple_repeat Simple_repeat 1 23 0 250 252 163 0 chrY 4597461 4597584 -20115495 - L1ME LINE L1 -394 5768 5626 1881 148 0 33 chrY 4599921 4600224 -20112855 - AluSx SINE Alu -19 293 1 2074 151 3 0 chrY 4600232 4600543 -20112536 - AluSx SINE Alu 0 312 1 555 201 63 90 chrY 4602169 4602358 -20110721 + MSTD LTR MaLR 210 393 -3 1641 151 55 24 chrY 4602697 4602988 -20110091 + AluSx SINE Alu 1 300 -12 255 251 143 54 chrY 4603082 4603508 -20109571 + L1M4 LINE L1 2598 3061 -3085 22 70 0 0 chrY 4603870 4603913 -20109166 + AT_rich Low_complexity Low_complexity 1 43 0 2097 122 3 3 chrY 4604388 4604682 -20108397 - AluSc SINE Alu -15 294 1 532 263 31 85 chrY 4604806 4604917 -20108162 - L1M4 LINE L1 -2117 4029 3913 1797 146 18 0 chrY 4604917 4605198 -20107881 - AluJb SINE Alu -19 293 8 532 263 31 85 chrY 4605198 4605379 -20107700 - L1M4 LINE L1 -2233 3913 3753 231 297 121 11 chrY 4605397 4605579 -20107500 - L1M4 LINE L1 -2468 3678 3477 * 29822 76 10 2 chrY 4605549 4610328 -20102751 - L1PA5 LINE L1 0 6154 1338 31862 59 2 3 chrY 4610331 4614306 -20098773 + L1PA3 LINE L1 1 3968 -2178 7779 37 5 0 chrY 4614306 4616029 -20097050 + L1PA3 LINE L1 4454 6180 0 1096 216 100 23 chrY 4616033 4616292 -20096787 - AluJb SINE Alu -33 279 1 1214 176 9 0 chrY 4616387 4616597 -20096482 - L1PA16 LINE L1 -9 6157 5946 207 100 0 0 chrY 4616777 4616807 -20096272 + (GA)n Simple_repeat Simple_repeat 1 30 0 1704 152 59 7 chrY 4616873 4617163 -20095916 - AluSc SINE Alu -4 305 1 2148 130 0 7 chrY 4617692 4617993 -20095086 - AluSg SINE Alu 0 310 12 198 0 0 0 chrY 4618918 4618940 -20094139 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 316 136 34 136 chrY 4618954 4618990 -20094089 + MADE1 DNA Mariner 2 40 -40 222 37 0 0 chrY 4618990 4619017 -20094062 + (TG)n Simple_repeat Simple_repeat 2 28 0 1875 143 56 0 chrY 4619018 4619284 -20093795 - AluSx SINE Alu -31 281 1 316 136 34 136 chrY 4619284 4619333 -20093746 + MADE1 DNA Mariner 39 80 0 3593 147 16 13 chrY 4619704 4620237 -20092842 + L1PA16 LINE L1 5530 6067 -99 1647 204 41 123 chrY 4620237 4620902 -20092177 + LTR9 LTR ERV1 3 612 0 3593 147 16 13 chrY 4620902 4620989 -20092090 + L1PA16 LINE L1 6067 6152 -14 1466 151 33 7 chrY 4621016 4621288 -20091791 + L1MB3 LINE L1 5895 6173 -10 717 197 0 0 chrY 4621291 4621418 -20091661 - FLAM_C SINE Alu -4 129 3 431 212 7 0 chrY 4622218 4622364 -20090715 + (TA)n Simple_repeat Simple_repeat 2 148 0 219 36 0 0 chrY 4622366 4622394 -20090685 + (GA)n Simple_repeat Simple_repeat 1 28 0 1186 162 20 10 chrY 4622394 4622598 -20090481 - AluJo SINE Alu -34 278 73 427 253 0 10 chrY 4622598 4622697 -20090382 - AluJo SINE Alu -128 184 87 1147 174 32 23 chrY 4622697 4622916 -20090163 - AluJo SINE Alu -91 221 1 2085 145 0 0 chrY 4623016 4623319 -20089760 - AluSx SINE Alu -7 305 3 1273 171 23 35 chrY 4623340 4623560 -20089519 + L1MA8 LINE L1 6018 6236 -55 2149 122 14 0 chrY 4623560 4623855 -20089224 + AluSp SINE Alu 1 299 -14 1273 171 23 35 chrY 4623855 4623891 -20089188 + L1MA8 LINE L1 6236 6271 -20 2040 138 3 0 chrY 4623907 4624190 -20088889 + AluSx SINE Alu 1 284 -28 1622 134 30 0 chrY 4624245 4624514 -20088565 - L1MA5A LINE L1 0 6297 6021 1542 161 71 29 chrY 4624884 4625135 -20087944 + MLT1A1 LTR MaLR 43 311 -54 1603 89 12 32 chrY 4625135 4625383 -20087696 + MER75B DNA T2_type 1 243 0 1542 161 71 29 chrY 4625383 4625441 -20087638 + MLT1A1 LTR MaLR 311 365 0 1781 158 3 36 chrY 4625558 4625861 -20087218 - AluSq SINE Alu -18 295 3 891 223 0 33 chrY 4626117 4626328 -20086751 + MER20 DNA MER1_type 1 204 -15 1601 159 3 76 chrY 4626573 4626746 -20086333 - AluJo SINE Alu -19 293 152 1892 172 0 3 chrY 4626746 4627037 -20086042 - AluSx SINE Alu -22 290 1 1601 159 3 76 chrY 4627037 4627178 -20085901 - AluJo SINE Alu -160 152 2 977 239 95 31 chrY 4627221 4627548 -20085531 - MLT1C LTR MaLR -8 459 112 1673 230 61 2 chrY 4627868 4628263 -20084816 + L1MB5 LINE L1 5728 6149 -25 1981 139 7 7 chrY 4628263 4628579 -20084500 + AluSx SINE Alu 3 297 -15 1673 230 61 2 chrY 4628579 4628591 -20084488 + L1MB5 LINE L1 6149 6159 -15 1526 208 0 14 chrY 4628684 4628978 -20084101 + AluJo SINE Alu 1 290 -22 2116 131 7 0 chrY 4629082 4629372 -20083707 - AluSx SINE Alu -16 296 5 2081 120 7 10 chrY 4629401 4629700 -20083379 - AluY SINE Alu -13 298 1 268 77 39 0 chrY 4629796 4629848 -20083231 + (TTA)n Simple_repeat Simple_repeat 1 54 0 43338 38 21 1 chrY 4629848 4635866 -20077213 - L1PA2 LINE L1 -13 6142 1 22 0 0 0 chrY 4635998 4636020 -20077059 + AT_rich Low_complexity Low_complexity 1 22 0 1363 236 7 7 chrY 4636289 4636565 -20076514 - AluJo SINE Alu -32 280 5 748 207 64 11 chrY 4636719 4636906 -20076173 + MLT1B LTR MaLR 1 187 -187 966 183 52 0 chrY 4636908 4637099 -20075980 - L1MB1 LINE L1 -1 6167 5967 477 122 0 0 chrY 4637107 4637181 -20075898 + (TC)n Simple_repeat Simple_repeat 1 74 0 776 207 0 0 chrY 4637204 4637344 -20075735 + MLT1B LTR MaLR 193 332 -58 1773 162 184 11 chrY 4637439 4637614 -20075465 - MSTA LTR MaLR -7 421 278 180 0 0 0 chrY 4637614 4637634 -20075445 + (GA)n Simple_repeat Simple_repeat 1 20 0 1773 162 184 11 chrY 4637634 4637817 -20075262 - MSTA LTR MaLR -150 278 1 2379 215 45 8 chrY 4638138 4638641 -20074438 + L1MB1 LINE L1 5586 6111 -78 2207 112 48 0 chrY 4638641 4638972 -20074107 + L1PB1 LINE L1 5800 6146 -5 2379 215 45 8 chrY 4638972 4638998 -20074081 + L1MB1 LINE L1 6111 6135 -54 261 227 61 0 chrY 4638998 4639064 -20074015 + L1MB1 LINE L1 6092 6161 -28 22 0 0 0 chrY 4639385 4639407 -20073672 + AT_rich Low_complexity Low_complexity 1 22 0 198 0 0 0 chrY 4640025 4640047 -20073032 + (T)n Simple_repeat Simple_repeat 1 22 0 560 205 8 33 chrY 4640135 4640535 -20072544 + CT-rich Low_complexity Low_complexity 1 390 0 1778 149 7 35 chrY 4640804 4641093 -20071986 + AluSx SINE Alu 1 281 -31 580 226 0 38 chrY 4641134 4641267 -20071812 + FLAM_C SINE Alu 1 128 -5 269 93 167 19 chrY 4641275 4641329 -20071750 + L1M3 LINE L1 5652 5713 -470 1474 193 10 49 chrY 4641342 4641648 -20071431 + AluJb SINE Alu 13 306 -6 849 237 56 40 chrY 4641655 4641989 -20071090 + L1MB5 LINE L1 5701 6037 -147 1394 108 0 0 chrY 4641997 4642183 -20070896 + AluSg/x SINE Alu 114 299 -13 341 202 71 12 chrY 4642245 4642329 -20070750 + L1MB3 LINE L1 6092 6180 -3 2320 141 68 34 chrY 4642849 4643288 -20069791 - MER50 LTR ERV1 -280 454 1 2224 121 3 0 chrY 4643292 4643605 -20069474 + MER41A LTR ERV1 1 314 -240 209 161 0 0 chrY 4644254 4644285 -20068794 + polypyrimidine Low_complexity Low_complexity 4 34 0 655 214 0 0 chrY 4644943 4645069 -20068010 + L1MB3 LINE L1 5804 5929 -254 670 152 14 58 chrY 4645072 4645210 -20067869 - LTR23 LTR ERV1 -1 436 305 1208 232 19 3 chrY 4645210 4645481 -20067598 - LTR10B LTR ERV1 0 591 310 248 269 0 0 chrY 4645500 4645552 -20067527 + LTR30 LTR ERV1 1 52 -670 1003 155 61 18 chrY 4645552 4645776 -20067303 + LTR12 LTR ERV1 60 1982 -456 284 145 87 14 chrY 4645814 4645883 -20067196 + LTR12 LTR ERV1 204 277 -437 291 165 63 90 chrY 4645883 4645994 -20067085 + LTR30 LTR ERV1 375 477 -92 589 141 0 0 chrY 4645999 4646084 -20066995 + LTR12 LTR ERV1 630 714 0 30341 133 13 11 chrY 4646104 4651525 -20061554 + HERV9 LTR ERV1 55 5568 -2831 6207 128 3 2 chrY 4651523 4652998 -20060081 + HERV9 LTR ERV1 6887 8399 0 * 252 208 0 19 chrY 4652998 4653051 -20060028 + LTR30 LTR ERV1 1 52 -670 677 178 22 144 chrY 4653051 4653321 -20059758 + LTR12 LTR ERV1 53 289 -425 259 222 0 42 chrY 4653321 4653393 -20059686 + LTR30 LTR ERV1 556 624 -98 662 155 13 1 chrY 4653393 4653510 -20059569 + LTR12 LTR ERV1 52 581 -133 505 188 97 51 chrY 4653510 4653713 -20059366 - LTR10B LTR ERV1 -287 218 1 5256 254 43 28 chrY 4653714 4655597 -20057482 - LTR10B-int LTR ERV1 -2 6647 4795 7586 72 23 12 chrY 4655597 4656556 -20056523 + LTR5 LTR ERVK 1 969 0 5256 254 43 28 chrY 4656556 4656753 -20056326 - LTR10B-int LTR ERV1 -1854 4795 2603 1721 304 58 22 chrY 4656778 4657455 -20055624 - LTR10B-int LTR ERV1 -2545 5240 4540 623 173 0 127 chrY 4657454 4657604 -20055475 - LTR10B-int LTR ERV1 -3220 3429 3299 * 5187 256 23 23 chrY 4657603 4658989 -20054090 - LTR10B-int LTR ERV1 -3768 2761 1374 449 226 148 13 chrY 4658979 4659134 -20053945 - LTR10B-int LTR ERV1 -5869 780 605 * 979 257 92 4 chrY 4659130 4659402 -20053677 - LTR10B-int LTR ERV1 -6347 302 7 1690 208 139 29 chrY 4659404 4659885 -20053194 - LTR10B LTR ERV1 0 547 14 843 212 0 0 chrY 4659891 4660037 -20053042 - AluJb SINE Alu -59 253 108 1284 185 43 18 chrY 4660047 4660328 -20052751 - LTR56 LTR ERV1 -149 296 9 250 277 24 0 chrY 4660334 4660417 -20052662 + L1MB2 LINE L1 5928 6012 -159 1416 217 23 7 chrY 4660467 4660767 -20052312 + AluJb SINE Alu 1 305 -7 604 237 8 0 chrY 4660930 4661121 -20051958 + FLAM_C SINE Alu 2 193 0 2272 148 22 3 chrY 4661188 4661545 -20051534 + THE1B LTR MaLR 1 364 0 3680 154 22 14 chrY 4661639 4662080 -20050999 + MER41B LTR ERV1 1 450 -185 1766 186 30 19 chrY 4662080 4662451 -20050628 - THE1C LTR MaLR 0 375 1 3680 154 22 14 chrY 4662451 4662639 -20050440 + MER41B LTR ERV1 450 635 0 1410 169 31 0 chrY 4663157 4663417 -20049662 + LTR26 LTR ERV1 1 268 -335 528 286 29 29 chrY 4663470 4663587 -20049492 + L1MD2 LINE L1 6077 6193 -166 1569 173 67 50 chrY 4663587 4663945 -20049134 + THE1B LTR MaLR 1 364 0 528 286 29 29 chrY 4663945 4664100 -20048979 + L1MD2 LINE L1 6192 6349 -10 2372 243 35 34 chrY 4664359 4665010 -20048069 + MER82 DNA MER2_type 1 652 -1 234 324 39 0 chrY 4665024 4665126 -20047953 + MLT1G1 LTR MaLR 25 130 -463 239 343 118 22 chrY 4665240 4665418 -20047661 + MLT1G1 LTR MaLR 305 499 -96 276 130 0 0 chrY 4665705 4665751 -20047328 + (T)n Simple_repeat Simple_repeat 1 46 0 40318 78 10 1 chrY 4665751 4671851 -20041228 - L1PA5 LINE L1 0 6154 1 23246 276 26 32 chrY 4672694 4680153 -20032926 + HERV3 LTR ERV1 1031 8734 -1 673 221 140 56 chrY 4680270 4680592 -20032487 + LTR15 LTR ERV1 127 475 -18 555 191 171 0 chrY 4680817 4680922 -20032157 + FLAM_C SINE Alu 3 125 -18 1275 239 10 16 chrY 4680934 4681248 -20031831 + AluJo SINE Alu 1 312 0 1946 149 0 4 chrY 4681349 4681625 -20031454 + AluSc SINE Alu 5 279 -30 324 48 0 0 chrY 4681625 4681667 -20031412 + (CTAA)n Simple_repeat Simple_repeat 3 44 0 1480 187 11 22 chrY 4682114 4682392 -20030687 + AluJo SINE Alu 1 275 -37 274 334 147 34 chrY 4682424 4682564 -20030515 - L2 LINE L2 0 3313 3190 1611 191 0 3 chrY 4682564 4682846 -20030233 + AluJb SINE Alu 6 286 -26 198 0 0 0 chrY 4682849 4682871 -20030208 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 274 334 147 34 chrY 4682871 4683052 -20030027 - L2 LINE L2 -124 3189 2951 218 292 34 39 chrY 4683496 4683674 -20029405 + (TATATG)n Simple_repeat Simple_repeat 3 179 0 * 363 237 52 12 chrY 4683549 4683722 -20029357 + (TA)n Simple_repeat Simple_repeat 1 180 0 360 278 34 17 chrY 4683678 4683854 -20029225 + (CATA)n Simple_repeat Simple_repeat 2 180 0 * 202 242 33 33 chrY 4683829 4683887 -20029192 + (CATATA)n Simple_repeat Simple_repeat 6 66 -30 * 1473 167 82 43 chrY 4683887 4684023 -20029056 + AluSx SINE Alu 1 130 -182 2936 0 0 0 chrY 4684023 4684333 -20028746 + AluYa5 SINE Alu 1 310 -1 1473 167 82 43 chrY 4684333 4684477 -20028602 + AluSx SINE Alu 130 292 -20 202 242 33 33 chrY 4684477 4684509 -20028570 + (CATATA)n Simple_repeat Simple_repeat 65 96 0 564 125 40 17 chrY 4684516 4684692 -20028387 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 439 278 5 48 chrY 4684809 4684996 -20028083 + (CA)n Simple_repeat Simple_repeat 2 180 0 208 355 13 20 chrY 4685050 4685202 -20027877 + (CA)n Simple_repeat Simple_repeat 1 151 0 329 89 0 0 chrY 4685212 4685257 -20027822 + AluSq SINE Alu 141 185 -118 305 283 30 18 chrY 4685260 4685426 -20027653 + (CATA)n Simple_repeat Simple_repeat 1 168 0 370 284 19 26 chrY 4685467 4685622 -20027457 + (CATA)n Simple_repeat Simple_repeat 4 157 0 1895 140 0 14 chrY 4685963 4686275 -20026804 + AluSg SINE Alu 1 308 0 786 120 9 0 chrY 4686420 4686528 -20026551 + AluSq SINE Alu 134 242 -71 1853 169 0 3 chrY 4686815 4687116 -20025963 + AluSx SINE Alu 1 300 -12 837 177 84 47 chrY 4687116 4687163 -20025916 - L1MA8 LINE L1 -23 6268 6224 1910 135 56 0 chrY 4687163 4687451 -20025628 + AluSc SINE Alu 1 304 -5 837 177 84 47 chrY 4687451 4687607 -20025472 - L1MA8 LINE L1 -67 6224 6054 1920 163 3 16 chrY 4687795 4688101 -20024978 + AluSx SINE Alu 1 302 -10 995 154 43 98 chrY 4688221 4688302 -20024777 + AluJo SINE Alu 46 130 -182 235 0 57 0 chrY 4688302 4688337 -20024742 + (TTTA)n Simple_repeat Simple_repeat 3 39 0 2034 143 0 0 chrY 4688344 4688630 -20024449 - AluSg SINE Alu -24 286 1 995 154 43 98 chrY 4688630 4688774 -20024305 + AluJo SINE Alu 136 266 -46 2227 97 17 0 chrY 4689055 4689345 -20023734 - AluY SINE Alu -16 295 1 1639 208 15 42 chrY 4689385 4689785 -20023294 + L1MC2 LINE L1 5937 6325 -19 1725 165 19 66 chrY 4689786 4690150 -20022929 + L1PB2 LINE L1 5802 6148 -3 1989 147 0 7 chrY 4690310 4690602 -20022477 + AluSx SINE Alu 1 290 -22 189 107 0 0 chrY 4690633 4690661 -20022418 + (TAA)n Simple_repeat Simple_repeat 2 29 0 1336 193 84 7 chrY 4690661 4690936 -20022143 + AluJo SINE Alu 1 296 -6 1409 129 4 43 chrY 4691274 4691506 -20021573 - AluSg/x SINE Alu -6 306 84 186 43 0 0 chrY 4691506 4691529 -20021550 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1781 170 0 7 chrY 4691569 4691875 -20021204 + AluSg SINE Alu 7 310 0 219 36 0 0 chrY 4691925 4691953 -20021126 + (CA)n Simple_repeat Simple_repeat 1 28 0 1864 156 7 17 chrY 4691959 4692248 -20020831 - AluSx SINE Alu -26 286 1 733 205 8 8 chrY 4692273 4692400 -20020679 + FLAM_C SINE Alu 1 127 -16 219 114 45 0 chrY 4692400 4692444 -20020635 + (TAA)n Simple_repeat Simple_repeat 3 48 0 585 207 51 109 chrY 4693101 4693281 -20019798 + L1MB3 LINE L1 5145 5334 -812 1687 193 3 0 chrY 4693281 4693576 -20019503 + AluSx SINE Alu 1 296 -16 1896 159 10 7 chrY 4693584 4693893 -20019186 + AluSx SINE Alu 1 310 -2 585 207 51 109 chrY 4693893 4693978 -20019101 + L1MB3 LINE L1 5341 5403 -743 * 1868 244 32 29 chrY 4693960 4694452 -20018627 + L1MA2 LINE L1 5477 5970 -334 * 3682 159 30 0 chrY 4694014 4694622 -20018457 + L1PA16 LINE L1 5521 6146 -20 752 194 62 0 chrY 4694631 4694791 -20018288 + L1MB3 LINE L1 5428 5597 -577 341 206 16 0 chrY 4694791 4694854 -20018225 + Charlie1 DNA MER1_type 2697 2760 -1 781 244 6 6 chrY 4695239 4695419 -20017660 + MER58A DNA MER1_type 45 224 0 2299 96 0 13 chrY 4695502 4695814 -20017265 + AluY SINE Alu 1 308 -3 25 0 0 0 chrY 4695814 4695839 -20017240 + AT_rich Low_complexity Low_complexity 1 25 0 2085 198 24 26 chrY 4695973 4696442 -20016637 + MER89 LTR ERV1 1 468 -91 405 214 39 0 chrY 4696451 4696605 -20016474 + (TGGA)n Simple_repeat Simple_repeat 3 162 0 337 261 35 0 chrY 4696620 4696735 -20016344 + (TAGA)n Simple_repeat Simple_repeat 4 122 0 645 199 27 0 chrY 4696735 4697038 -20016041 + (TGGA)n Simple_repeat Simple_repeat 1 311 0 499 196 22 17 chrY 4697058 4697237 -20015842 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 376 230 11 0 chrY 4697249 4697336 -20015743 + MER89 LTR ERV1 472 559 0 1894 142 17 0 chrY 4698210 4698499 -20014580 + AluY SINE Alu 1 294 -17 1611 189 7 23 chrY 4698766 4699068 -20014011 - AluJo SINE Alu -15 297 1 635 128 23 8 chrY 4699857 4699990 -20013089 + (TCCA)n Simple_repeat Simple_repeat 3 137 0 237 33 0 0 chrY 4700010 4700040 -20013039 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 2086 130 0 0 chrY 4700043 4700328 -20012751 - AluSx SINE Alu -27 285 1 207 206 59 7 chrY 4700411 4700547 -20012532 + (TCCA)n Simple_repeat Simple_repeat 3 145 0 1927 124 57 0 chrY 4700686 4700968 -20012111 + AluSc SINE Alu 1 298 -11 3176 199 17 5 chrY 4701012 4701616 -20011463 + L1MB3 LINE L1 5566 6176 -7 2059 134 0 7 chrY 4701928 4702235 -20010844 - AluSg1 SINE Alu 0 309 5 2119 131 3 3 chrY 4702307 4702605 -20010474 + AluSx SINE Alu 1 298 -14 1913 149 36 0 chrY 4702612 4702913 -20010166 + AluSx SINE Alu 1 312 0 1025 155 184 15 chrY 4702921 4703127 -20009952 + AluSg1 SINE Alu 1 241 -68 1897 194 102 36 chrY 4703750 4703875 -20009204 - MLT1D LTR MaLR -4 501 386 1803 166 0 3 chrY 4703875 4704158 -20008921 + AluJo SINE Alu 1 282 -30 1897 194 102 36 chrY 4704158 4704502 -20008577 - MLT1D LTR MaLR -119 386 1 180 325 98 16 chrY 4704518 4704641 -20008438 - MIR SINE MIR -79 183 51 528 158 11 0 chrY 4704650 4704745 -20008334 - L1PA11 LINE L1 0 6174 6079 433 178 0 0 chrY 4704745 4704818 -20008261 - L1P4 LINE L1 -680 5488 5416 * 4600 123 13 1 chrY 4704794 4705470 -20007609 - L1PA11 LINE L1 -81 6093 5410 1105 172 0 26 chrY 4705762 4705954 -20007125 + AluJo SINE Alu 90 276 -36 1032 139 75 111 chrY 4705988 4706268 -20006811 + L1MA8 LINE L1 6020 6289 -2 1898 142 14 3 chrY 4706275 4706570 -20006509 + AluSx SINE Alu 1 298 -14 213 288 0 0 chrY 4706589 4706662 -20006417 + A-rich Low_complexity Low_complexity 1 73 0 657 186 0 0 chrY 4706703 4706805 -20006274 + FLAM_A SINE Alu 27 128 -14 1830 179 3 0 chrY 4706838 4707139 -20005940 - AluSq SINE Alu -11 302 1 279 205 84 12 chrY 4707231 4707314 -20005765 - MLT1D LTR MaLR -30 475 387 * 1934 163 119 26 chrY 4707309 4707666 -20005413 - MSTA LTR MaLR -6 422 25 2704 102 28 3 chrY 4707666 4708030 -20005049 + THE1C LTR MaLR 3 375 0 1934 163 119 26 chrY 4708030 4708058 -20005021 - MSTA LTR MaLR -403 25 1 1827 220 32 3 chrY 4708058 4708435 -20004644 - MLT1D LTR MaLR -113 392 5 2271 125 0 3 chrY 4708648 4708960 -20004119 - AluY SINE Alu 0 311 1 1675 165 33 4 chrY 4709094 4709366 -20003713 - AluJb SINE Alu -32 280 1 3710 159 2 3 chrY 4709448 4710040 -20003039 + L1PA15 LINE L1 5467 6057 -108 758 236 14 7 chrY 4710045 4710193 -20002886 - AluJo SINE Alu -162 150 2 2131 132 0 7 chrY 4710198 4710493 -20002586 - AluSx SINE Alu -19 293 1 398 320 121 21 chrY 4710582 4710730 -20002349 - HAL1 LINE L1 -145 2362 2230 306 0 0 0 chrY 4710730 4710764 -20002315 + (CA)n Simple_repeat Simple_repeat 2 35 0 398 320 121 21 chrY 4710764 4711127 -20001952 - HAL1 LINE L1 -277 2230 1800 221 224 13 66 chrY 4711174 4711250 -20001829 + MIR SINE MIR 108 179 -83 1879 166 16 3 chrY 4711659 4711967 -20001112 - AluSx SINE Alu 0 312 1 488 192 6 33 chrY 4711977 4712159 -20000920 + CT-rich Low_complexity Low_complexity 2 178 0 209 213 0 32 chrY 4712176 4712270 -20000809 + CT-rich Low_complexity Low_complexity 2 92 0 1649 167 0 44 chrY 4712440 4712575 -20000504 + AluJb SINE Alu 1 140 -172 2084 148 0 0 chrY 4712575 4712873 -20000206 + AluSg SINE Alu 1 298 -12 1649 167 0 44 chrY 4712873 4713054 -20000025 + AluJb SINE Alu 140 303 -9 285 151 0 0 chrY 4713401 4713454 -19999625 + (TG)n Simple_repeat Simple_repeat 1 53 0 1731 179 15 3 chrY 4713613 4713937 -19999142 + MLT1A1 LTR MaLR 1 328 -37 1825 147 27 14 chrY 4714067 4714359 -19998720 + AluSq SINE Alu 1 296 -17 265 260 0 26 chrY 4714556 4714633 -19998446 + L1M3 LINE L1 5633 5707 -473 270 0 0 0 chrY 4714674 4714704 -19998375 + (TC)n Simple_repeat Simple_repeat 2 31 0 * 369 0 0 0 chrY 4714703 4714744 -19998335 + (TA)n Simple_repeat Simple_repeat 1 41 0 234 69 0 0 chrY 4714744 4714773 -19998306 - Alu SINE Alu -17 283 255 2164 122 0 3 chrY 4714776 4715072 -19998007 - AluY SINE Alu -16 295 1 1617 192 3 14 chrY 4715081 4715373 -19997706 - AluJb SINE Alu -23 289 1 1586 126 8 8 chrY 4715399 4715637 -19997442 - L1PA14 LINE L1 -2 6159 5922 2054 149 0 0 chrY 4715719 4716020 -19997059 + AluSg SINE Alu 1 301 -9 292 156 13 13 chrY 4716273 4716350 -19996729 + (TA)n Simple_repeat Simple_repeat 2 78 0 710 171 18 9 chrY 4716556 4716778 -19996301 + CT-rich Low_complexity Low_complexity 1 224 0 1126 212 9 0 chrY 4716797 4717014 -19996065 - AluJb SINE Alu -93 219 1 1370 206 87 4 chrY 4717115 4717391 -19995688 + AluJo SINE Alu 1 299 -13 934 213 6 0 chrY 4718013 4718196 -19994883 - AluJo SINE Alu -8 304 121 22 0 0 0 chrY 4718209 4718231 -19994848 + AT_rich Low_complexity Low_complexity 1 22 0 1601 176 17 10 chrY 4718274 4718564 -19994515 - AluSx SINE Alu -20 292 1 4245 153 52 88 chrY 4718572 4719056 -19994023 - L1MC1 LINE L1 0 6333 5898 1566 215 10 0 chrY 4719056 4719349 -19993730 - AluJo SINE Alu -8 304 9 4245 153 52 88 chrY 4719349 4719818 -19993261 - L1MC1 LINE L1 -435 5898 5414 309 272 86 49 chrY 4719821 4720028 -19993051 - L1ME3A LINE L1 -224 5946 5748 2087 180 30 22 chrY 4720028 4720389 -19992690 + THE1B LTR MaLR 1 364 0 309 272 86 49 chrY 4720389 4720592 -19992487 - L1ME3A LINE L1 -422 5748 5530 33 43 0 0 chrY 4720752 4720799 -19992280 + AT_rich Low_complexity Low_complexity 1 47 0 1276 174 8 43 chrY 4720800 4721035 -19992044 - AluJo SINE Alu -49 263 37 320 270 62 89 chrY 4721057 4721238 -19991841 - L1ME3A LINE L1 -2066 4080 3907 2138 106 7 0 chrY 4721238 4721521 -19991558 + AluSc SINE Alu 1 285 -24 320 270 62 89 chrY 4721521 4721598 -19991481 - L1ME3A LINE L1 -2239 3907 3829 288 285 78 68 chrY 4721627 4721851 -19991228 - L1ME3A LINE L1 -2430 3716 3496 2685 103 5 14 chrY 4721851 4722197 -19990882 - L1PA8 LINE L1 -1 6171 5827 5220 99 133 1 chrY 4722197 4722927 -19990152 - LTR12 LTR ERV1 0 826 1 2685 103 5 14 chrY 4722927 4722950 -19990129 - L1PA8 LINE L1 -345 5827 5805 288 285 78 68 chrY 4722950 4723079 -19990000 - L1ME3A LINE L1 -2650 3496 3370 2028 141 7 10 chrY 4723079 4723385 -19989694 - AluSx SINE Alu -7 305 1 288 285 78 68 chrY 4723385 4723532 -19989547 - L1ME3A LINE L1 -2776 3370 3210 278 186 31 68 chrY 4723573 4723653 -19989426 + A-rich Low_complexity Low_complexity 1 82 -388 1602 161 79 0 chrY 4723653 4723933 -19989146 + AluSx SINE Alu 1 302 -10 278 186 31 68 chrY 4723933 4724062 -19989017 + A-rich Low_complexity Low_complexity 82 470 0 863 229 33 0 chrY 4725077 4725260 -19987819 + MER2 DNA MER2_type 1 189 -156 34221 39 14 1 chrY 4725292 4731246 -19981833 - L1PA2 LINE L1 -4 6151 64 1151 158 10 30 chrY 4731247 4731449 -19981630 - AluJo SINE Alu -19 293 96 * 1311 126 0 53 chrY 4731447 4731653 -19981426 - AluSx SINE Alu -117 195 1 897 154 70 0 chrY 4731954 4732097 -19980982 + FRAM SINE Alu 11 163 -13 603 213 7 28 chrY 4732347 4732488 -19980591 - MLT1C LTR MaLR 0 467 330 2523 191 36 38 chrY 4732490 4732615 -19980464 - LTR39 LTR ERV1 -28 755 631 1847 175 3 0 chrY 4732615 4732907 -19980172 + AluJb SINE Alu 6 298 -14 2523 191 36 38 chrY 4732907 4733311 -19979768 - LTR39 LTR ERV1 -152 631 227 390 134 0 0 chrY 4733311 4733378 -19979701 + (TTCC)n Simple_repeat Simple_repeat 1 67 0 251 206 309 0 chrY 4733379 4733476 -19979603 - AluSp/q SINE Alu -5 298 172 1290 219 137 35 chrY 4733511 4733994 -19979085 - LTR10B LTR ERV1 -3 544 13 1155 104 0 0 chrY 4734014 4734158 -19978921 - AluSq/x SINE Alu -169 144 1 792 145 38 44 chrY 4734158 4734216 -19978863 - LTR39 LTR ERV1 -554 229 172 2035 138 3 10 chrY 4734216 4734521 -19978558 - AluSq SINE Alu -7 306 4 792 145 38 44 chrY 4734521 4734621 -19978458 - LTR39 LTR ERV1 -611 172 72 393 161 81 11 chrY 4734669 4734756 -19978323 - LTR39 LTR ERV1 -690 93 1 2172 122 3 0 chrY 4734757 4735084 -19977995 + MER41B LTR ERV1 1 328 -307 1473 164 63 13 chrY 4735098 4735397 -19977682 + MER61A LTR ERV1 30 343 0 991 121 0 0 chrY 4735397 4735531 -19977548 + MER41B LTR ERV1 323 456 -179 858 191 0 0 chrY 4735534 4735681 -19977398 + AluSg/x SINE Alu 163 309 -1 2136 138 3 0 chrY 4735695 4736006 -19977073 + AluSx SINE Alu 1 312 0 993 139 6 0 chrY 4736025 4736191 -19976888 + MER41B LTR ERV1 469 635 0 847 222 105 52 chrY 4736205 4736310 -19976769 - MLT1C LTR MaLR -145 322 224 420 20 0 0 chrY 4736310 4736359 -19976720 + (TG)n Simple_repeat Simple_repeat 2 50 0 847 222 105 52 chrY 4736359 4736495 -19976584 - MLT1C LTR MaLR -243 224 59 3398 123 123 4 chrY 4736495 4736779 -19976300 + MER41B LTR ERV1 4 253 -382 315 71 0 0 chrY 4736779 4736821 -19976258 + (CCCTAA)n Simple_repeat Simple_repeat 1 42 0 3398 123 123 4 chrY 4736821 4737099 -19975980 + MER41B LTR ERV1 253 633 -2 847 222 105 52 chrY 4737099 4737162 -19975917 - MLT1C LTR MaLR -408 59 1 191 221 0 103 chrY 4737307 4737375 -19975704 - MER5B DNA MER1_type -8 170 110 1711 181 3 3 chrY 4737403 4737690 -19975389 - AluSx SINE Alu -21 291 5 1075 205 138 41 chrY 4737781 4738049 -19975030 + AluJo SINE Alu 1 294 -8 4279 57 14 16 chrY 4738691 4739250 -19973829 + LTR6B LTR ERV1 1 558 0 3048 149 76 117 chrY 4739549 4740487 -19972592 + pTR5 LTR ERV1 1131 2293 -145 1913 120 40 4 chrY 4740507 4740817 -19972262 + AluSx SINE Alu 3 312 0 1671 146 0 11 chrY 4741515 4741775 -19971304 + AluSx SINE Alu 1 257 -55 1532 200 40 0 chrY 4741819 4742119 -19970960 - AluJo SINE Alu 0 312 1 2325 109 0 3 chrY 4742303 4742605 -19970474 + AluSx SINE Alu 1 301 -11 2002 173 0 0 chrY 4742744 4743056 -19970023 - AluSx SINE Alu 0 312 1 1660 211 20 0 chrY 4743078 4743376 -19969703 - AluJo SINE Alu -8 304 1 225 178 0 0 chrY 4743937 4743982 -19969097 + A-rich Low_complexity Low_complexity 1 45 0 468 211 60 60 chrY 4744023 4744156 -19968923 - AluJb SINE Alu -177 135 3 1019 140 34 0 chrY 4744329 4744508 -19968571 - L1MA5A LINE L1 -2 6295 6111 333 118 0 0 chrY 4744515 4744554 -19968525 + (TG)n Simple_repeat Simple_repeat 1 90 0 333 118 0 0 chrY 4744554 4744605 -19968474 + (TG)n Simple_repeat Simple_repeat 2 52 0 1935 154 0 0 chrY 4744605 4744891 -19968188 - AluSx SINE Alu -26 286 1 342 215 0 0 chrY 4744906 4744985 -19968094 + (CA)n Simple_repeat Simple_repeat 2 80 0 1787 161 18 0 chrY 4744999 4745272 -19967807 - AluJb SINE Alu -22 290 13 459 146 0 0 chrY 4745283 4745365 -19967714 - L1MA5A LINE L1 -177 6120 6039 244 132 0 0 chrY 4745620 4745658 -19967421 + MADE1 DNA Mariner 2 39 -41 1233 148 30 15 chrY 4745658 4745679 -19967400 - AluSg/x SINE Alu -12 300 281 201 39 0 0 chrY 4745679 4745705 -19967374 + (TG)n Simple_repeat Simple_repeat 1 26 0 1233 148 30 15 chrY 4745705 4745885 -19967194 - AluSg/x SINE Alu -31 281 96 1191 165 133 39 chrY 4745987 4746242 -19966837 + AluJo SINE Alu 15 293 -19 854 222 0 30 chrY 4746429 4746596 -19966483 - FRAM SINE Alu 0 166 5 1800 152 0 0 chrY 4746600 4746857 -19966222 - AluSq SINE Alu -54 259 3 216 0 0 0 chrY 4746870 4746894 -19966185 + (CA)n Simple_repeat Simple_repeat 2 25 0 602 124 38 0 chrY 4746896 4747001 -19966078 + L1PB4 LINE L1 5793 5901 -255 21 82 0 0 chrY 4747018 4747067 -19966012 + AT_rich Low_complexity Low_complexity 1 49 0 368 241 36 18 chrY 4747073 4747239 -19965840 + (TA)n Simple_repeat Simple_repeat 2 170 0 1126 157 77 119 chrY 4747300 4747612 -19965467 - AluJo SINE Alu -3 299 1 301 247 48 41 chrY 4748858 4749004 -19964075 + MER53 DNA DNA 37 183 -6 24 32 0 0 chrY 4749480 4749511 -19963568 + GC_rich Low_complexity Low_complexity 1 31 0 25 31 0 0 chrY 4750050 4750082 -19962997 + GC_rich Low_complexity Low_complexity 1 32 0 397 308 0 22 chrY 4751350 4751532 -19961547 + CT-rich Low_complexity Low_complexity 2 179 0 270 0 0 0 chrY 4752078 4752108 -19960971 + (TG)n Simple_repeat Simple_repeat 2 31 0 1886 132 38 7 chrY 4752588 4752876 -19960203 + AluSq SINE Alu 1 297 -16 1431 219 0 28 chrY 4753181 4753501 -19959578 + AluJo SINE Alu 1 311 -1 291 54 0 0 chrY 4753525 4753562 -19959517 + (TAAAA)n Simple_repeat Simple_repeat 2 38 0 2053 146 0 13 chrY 4753713 4754022 -19959057 + AluSg SINE Alu 1 305 -5 282 256 49 24 chrY 4754178 4754260 -19958819 + MIR SINE MIR 100 183 -79 458 269 60 0 chrY 4754297 4754464 -19958615 - L1MD3 LINE L1 -17 7978 7802 1926 148 13 20 chrY 4754465 4754770 -19958309 - AluJo SINE Alu -9 303 1 336 238 20 86 chrY 4754770 4754921 -19958158 - L1MD2 LINE L1 -176 6183 6043 2169 223 21 23 chrY 4755078 4755590 -19957489 - LTR10D LTR ERV1 -2 511 1 249 222 0 0 chrY 4755660 4755705 -19957374 - MLT1A1 LTR MaLR -5 360 316 1041 120 14 0 chrY 4755705 4755847 -19957232 - AluY SINE Alu -13 298 155 1663 163 14 3 chrY 4755852 4756147 -19956932 - MLT1A1 LTR MaLR -67 298 1 205 96 0 58 chrY 4756485 4756537 -19956542 + (TTAAA)n Simple_repeat Simple_repeat 1 49 0 491 168 0 50 chrY 4756567 4756668 -19956411 - FLAM_C SINE Alu -26 117 22 350 276 95 19 chrY 4756758 4756863 -19956216 + MER81 DNA DNA 1 113 -1 2525 78 0 0 chrY 4757000 4757309 -19955770 - AluY SINE Alu -2 309 1 1490 198 10 17 chrY 4757314 4757612 -19955467 - AluJo SINE Alu -10 302 7 592 158 53 9 chrY 4757844 4757958 -19955121 + AluJb SINE Alu 177 295 -17 1538 180 3 49 chrY 4757967 4758093 -19954986 + AluJb SINE Alu 1 131 -181 2016 141 7 0 chrY 4758093 4758384 -19954695 - AluSg SINE Alu -17 293 1 1538 180 3 49 chrY 4758384 4758563 -19954516 + AluJb SINE Alu 131 292 -20 189 200 0 0 chrY 4758587 4758622 -19954457 + L2 LINE L2 3261 3295 -18 207 0 0 0 chrY 4758747 4758770 -19954309 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1667 202 26 14 chrY 4759039 4759385 -19953694 + MLT1A1 LTR MaLR 14 363 -2 888 205 30 43 chrY 4759711 4759945 -19953134 + L1MB5 LINE L1 5936 6166 -8 1335 134 5 0 chrY 4760062 4760256 -19952823 - AluSg/x SINE Alu -19 291 97 2076 183 10 16 chrY 4760349 4760570 -19952509 - MLT1B LTR MaLR 0 390 170 1645 178 20 20 chrY 4760570 4760874 -19952205 - AluJo SINE Alu -8 304 1 2076 183 10 16 chrY 4760874 4761040 -19952039 - MLT1B LTR MaLR -220 170 5 226 268 0 0 chrY 4761186 4761242 -19951837 - MLT1C LTR MaLR 0 467 412 1206 187 8 8 chrY 4761254 4761500 -19951579 + L1MA8 LINE L1 5676 5921 -370 1666 170 21 10 chrY 4761502 4761790 -19951289 - AluJb SINE Alu -21 291 1 2161 135 0 6 chrY 4762205 4762517 -19950562 + AluSx SINE Alu 1 310 -2 1078 140 0 28 chrY 4762870 4763049 -19950030 - FRAM SINE Alu -7 169 1 1842 176 10 13 chrY 4763185 4763492 -19949587 + AluJb SINE Alu 1 306 -6 3991 116 2 0 chrY 4764049 4764602 -19948477 - MER41A LTR ERV1 0 554 1 1864 134 62 10 chrY 4764773 4765096 -19947983 + AluSg SINE Alu 1 310 0 1443 209 14 17 chrY 4765106 4765398 -19947681 + AluJo SINE Alu 12 302 -10 21 0 0 0 chrY 4765429 4765450 -19947629 + AT_rich Low_complexity Low_complexity 1 21 0 1748 163 12 35 chrY 4765605 4765924 -19947155 + AluJb SINE Alu 1 312 0 244 233 0 17 chrY 4765927 4765987 -19947092 + A-rich Low_complexity Low_complexity 3 61 0 307 294 15 7 chrY 4766115 4766251 -19946828 - L1M4 LINE L1 -2910 3236 3100 668 195 31 130 chrY 4766644 4766737 -19946342 - MLT1C LTR MaLR -199 268 167 1906 151 3 7 chrY 4766737 4767041 -19946038 - AluSq SINE Alu -10 303 1 668 195 31 130 chrY 4767041 4767239 -19945840 - MLT1C LTR MaLR -300 167 6 1611 178 20 30 chrY 4767862 4768160 -19944919 - AluJo SINE Alu -17 295 1 1894 178 0 0 chrY 4768278 4768576 -19944503 - AluSx SINE Alu -14 298 1 2201 128 3 0 chrY 4768586 4768884 -19944195 - AluSp SINE Alu -14 299 1 2270 103 0 13 chrY 4769194 4769504 -19943575 - AluY SINE Alu -5 306 1 1489 185 56 0 chrY 4769746 4770016 -19943063 + AluJo SINE Alu 3 291 -21 198 0 0 0 chrY 4770016 4770038 -19943041 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 1489 185 56 0 chrY 4770038 4770054 -19943025 + AluJo SINE Alu 291 305 -7 641 155 0 39 chrY 4770065 4770194 -19942885 + L1MB3 LINE L1 6059 6182 -1 800 191 8 0 chrY 4770231 4770362 -19942717 + FLAM_C SINE Alu 2 133 0 1861 164 0 7 chrY 4770689 4770988 -19942091 - AluJb SINE Alu -13 299 3 209 275 232 21 chrY 4771184 4771326 -19941753 - MIR SINE MIR -12 250 79 493 159 35 24 chrY 4771381 4771551 -19941528 + GA-rich Low_complexity Low_complexity 1 172 0 1149 190 0 5 chrY 4771650 4771845 -19941234 + AluJo SINE Alu 1 194 -118 2053 137 0 10 chrY 4771877 4772183 -19940896 + AluSg1 SINE Alu 1 303 -6 962 196 5 21 chrY 4772183 4772361 -19940718 + AluSg/x SINE Alu 136 312 0 847 210 44 0 chrY 4772365 4772570 -19940509 + MLT1B LTR MaLR 172 385 -5 1884 156 7 13 chrY 4772998 4773305 -19939774 - AluJo SINE Alu -7 305 1 1289 224 70 33 chrY 4773665 4774093 -19938986 - MLT1C LTR MaLR -23 444 1 299 232 226 5 chrY 4774103 4774293 -19938786 - MLT1C LTR MaLR -122 345 114 360 0 0 0 chrY 4774293 4774333 -19938746 + (TA)n Simple_repeat Simple_repeat 2 41 0 276 145 9 49 chrY 4774343 4774448 -19938631 - AluJo SINE Alu -166 136 1 399 240 10 0 chrY 4774461 4774565 -19938514 - MLT1C LTR MaLR -359 108 4 1073 163 11 16 chrY 4775187 4775404 -19937675 - AluSg/x SINE Alu 0 313 98 259 263 0 0 chrY 4775585 4775642 -19937437 - MLT1J LTR MaLR -339 172 116 967 164 19 6 chrY 4776936 4777095 -19935984 + AluJb SINE Alu 129 289 -23 1698 217 36 36 chrY 4777183 4777361 -19935718 - L1MA9 LINE L1 -191 6121 5944 2544 111 3 14 chrY 4777361 4777729 -19935350 - THE1B LTR MaLR 0 364 1 1698 217 36 36 chrY 4777729 4777993 -19935086 - L1MA9 LINE L1 -367 5945 5679 1060 191 156 13 chrY 4778379 4778604 -19934475 + AluSg1 SINE Alu 9 265 -44 182 191 21 0 chrY 4778707 4778754 -19934325 + GA-rich Low_complexity Low_complexity 1 48 0 437 244 0 13 chrY 4778866 4779022 -19934057 + GA-rich Low_complexity Low_complexity 1 154 0 213 132 0 0 chrY 4779422 4779460 -19933619 + (TC)n Simple_repeat Simple_repeat 2 39 0 2018 164 40 3 chrY 4780348 4780696 -19932383 - MLT1A1 LTR MaLR 0 365 5 1098 118 0 0 chrY 4781382 4781535 -19931544 + AluSx SINE Alu 5 157 -155 1574 185 0 17 chrY 4781815 4782113 -19930966 - AluSx SINE Alu -19 293 1 7542 37 2 0 chrY 4782171 4783552 -19929527 - L1PA4 LINE L1 0 6155 4774 27 49 0 0 chrY 4783628 4783669 -19929410 + AT_rich Low_complexity Low_complexity 1 41 0 854 189 0 0 chrY 4783674 4783838 -19929241 - AluJb SINE Alu -26 286 123 25 31 0 0 chrY 4783838 4783870 -19929209 + AT_rich Low_complexity Low_complexity 1 32 0 805 268 9 5 chrY 4783948 4784161 -19928918 - AluJo SINE Alu -98 214 1 698 197 0 0 chrY 4784469 4784591 -19928488 + FLAM_C SINE Alu 5 126 -7 1237 192 0 0 chrY 4784607 4784831 -19928248 + AluSg/x SINE Alu 87 310 -2 1749 177 0 0 chrY 4785040 4785328 -19927751 + AluJb SINE Alu 5 292 -20 619 242 43 54 chrY 4785845 4786031 -19927048 - MER20 DNA MER1_type -35 184 1 360 209 52 29 chrY 4786032 4786204 -19926875 + (TAGA)n Simple_repeat Simple_repeat 3 178 0 700 195 65 18 chrY 4786706 4786875 -19926204 - MER20 DNA MER1_type 0 219 43 198 0 0 0 chrY 4786973 4786995 -19926084 + (TGGA)n Simple_repeat Simple_repeat 1 22 0 426 178 24 32 chrY 4787028 4787281 -19925798 + (TAGA)n Simple_repeat Simple_repeat 1 250 0 192 77 0 0 chrY 4787291 4787317 -19925762 + (TGGA)n Simple_repeat Simple_repeat 3 28 0 1898 148 7 0 chrY 4787426 4787731 -19925348 - AluSx SINE Alu -5 307 1 2212 98 0 0 chrY 4787779 4788076 -19925003 - AluY SINE Alu -14 297 1 604 267 37 37 chrY 4788385 4788576 -19924503 - MER20 DNA MER1_type -27 192 2 334 197 58 15 chrY 4788675 4788812 -19924267 + (TAGA)n Simple_repeat Simple_repeat 3 145 0 684 225 70 47 chrY 4788849 4789062 -19924017 - MER20 DNA MER1_type -1 218 1 218 169 42 68 chrY 4789063 4789181 -19923898 + (TAGA)n Simple_repeat Simple_repeat 3 117 0 26 50 0 0 chrY 4789250 4789290 -19923789 + AT_rich Low_complexity Low_complexity 1 40 0 186 43 0 0 chrY 4790143 4790166 -19922913 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 1338 203 0 20 chrY 4790480 4790775 -19922304 - AluJo SINE Alu -21 291 3 498 229 110 0 chrY 4790781 4790899 -19922180 - FLAM_C SINE Alu -11 132 2 550 208 0 0 chrY 4790934 4791030 -19922049 + AluSg/x SINE Alu 170 265 -45 1985 195 23 44 chrY 4791041 4791519 -19921560 - L1MB3 LINE L1 -56 6127 5660 1696 166 13 0 chrY 4791533 4791840 -19921239 - AluSx SINE Alu -1 311 1 288 189 0 0 chrY 4792083 4792136 -19920943 - MER4-int LTR ERV1 -5434 1164 1112 209 261 22 0 chrY 4792136 4792182 -19920897 + (CACG)n Simple_repeat Simple_repeat 3 49 0 1871 185 19 29 chrY 4792294 4792705 -19920374 - L1PB4 LINE L1 -1 6155 5749 1600 181 0 13 chrY 4792736 4793040 -19920039 + AluJo SINE Alu 11 310 -2 1337 207 14 30 chrY 4793611 4793906 -19919173 - AluJo SINE Alu -17 295 6 755 169 0 0 chrY 4794081 4794199 -19918880 + AluJo/FLAM SINE Alu 2 119 -193 1285 199 33 11 chrY 4794199 4794470 -19918609 - AluJo SINE Alu -17 295 19 565 181 17 17 chrY 4794476 4794592 -19918487 - AluJo SINE Alu -166 146 31 1696 179 0 3 chrY 4795276 4795572 -19917507 - AluJo SINE Alu -14 298 4 229 185 31 0 chrY 4795962 4796027 -19917052 + CT-rich Low_complexity Low_complexity 4 70 0 300 53 0 0 chrY 4796385 4796423 -19916656 + (GA)n Simple_repeat Simple_repeat 1 38 0 1106 145 0 5 chrY 4796953 4797139 -19915940 + AluSg/x SINE Alu 128 312 0 1477 169 50 17 chrY 4797559 4797860 -19915219 - AluJo SINE Alu -1 311 1 1451 183 70 18 chrY 4798258 4798378 -19914701 + AluJb SINE Alu 1 113 -189 359 41 20 0 chrY 4798378 4798427 -19914652 + (TAA)n Simple_repeat Simple_repeat 2 51 0 1451 183 70 18 chrY 4798427 4798590 -19914489 + AluJb SINE Alu 113 299 -3 1876 209 19 0 chrY 4799008 4799386 -19913693 - MLT1B LTR MaLR -4 386 2 969 249 63 20 chrY 4799489 4799839 -19913240 + MLT1A1 LTR MaLR 1 365 0 1017 107 4 179 chrY 4800093 4800327 -19912752 - 7SK RNA RNA 0 193 1 969 162 6 6 chrY 4802079 4802261 -19910818 + L1PB3 LINE L1 5830 6011 -143 1405 173 71 0 chrY 4802682 4802936 -19910143 + AluJo SINE Alu 28 299 -13 30 69 0 0 chrY 4802999 4803057 -19910022 + AT_rich Low_complexity Low_complexity 1 58 0 411 38 0 0 chrY 4803174 4803227 -19909852 + (TG)n Simple_repeat Simple_repeat 1 53 0 1508 159 19 0 chrY 4803259 4803530 -19909549 - AluSx SINE Alu -19 293 18 1559 199 0 10 chrY 4803734 4804041 -19909038 - AluJo SINE Alu -8 304 1 1834 119 37 14 chrY 4804097 4804392 -19908687 - AluSg SINE Alu -8 302 1 1784 125 20 20 chrY 4804760 4805065 -19908014 - AluSx SINE Alu -7 305 1 1980 108 0 51 chrY 4805077 4805392 -19907687 - AluY SINE Alu -4 307 9 563 193 0 83 chrY 4805394 4805539 -19907540 - AluJo SINE Alu -178 134 2 896 222 43 32 chrY 4805975 4806254 -19906825 - Charlie5 DNA MER1_type 0 2624 2343 761 187 0 8 chrY 4806265 4806399 -19906680 + FLAM_C SINE Alu 1 133 0 1101 130 17 74 chrY 4806423 4806654 -19906425 - MER39 LTR ERV1 -84 623 406 912 184 92 10 chrY 4806667 4806863 -19906216 - MSTC LTR MaLR -50 378 167 610 164 8 60 chrY 4806899 4807033 -19906046 - L1PB2 LINE L1 -3 6148 6022 1844 147 3 7 chrY 4807034 4807341 -19905738 - AluSx SINE Alu -6 306 1 2026 138 0 0 chrY 4807578 4807876 -19905203 - AluSx SINE Alu -5 307 10 1955 134 3 0 chrY 4808179 4808471 -19904608 - AluSg SINE Alu -17 293 1 1645 199 0 0 chrY 4808471 4808809 -19904270 - AluSx SINE Alu 0 312 1 1634 191 0 0 chrY 4808933 4809232 -19903847 - AluJo SINE Alu -9 303 5 316 146 49 0 chrY 4809232 4809314 -19903765 + C-rich Low_complexity Low_complexity 1 86 0 182 174 14 43 chrY 4809318 4809387 -19903692 + T-rich Low_complexity Low_complexity 3 69 0 1310 152 22 30 chrY 4809716 4809947 -19903132 - MER46A DNA MER2_type -7 229 1 704 186 8 0 chrY 4810066 4810190 -19902889 - AluJb SINE Alu -179 133 9 250 313 35 28 chrY 4810332 4810476 -19902603 - L1MC5 LINE L1 -54 7907 7763 305 113 0 113 chrY 4810570 4810632 -19902447 + AluJo SINE Alu 85 139 -163 417 237 14 3 chrY 4810634 4810789 -19902290 + MER58A DNA MER1_type 22 224 0 1336 216 97 8 chrY 4810821 4811172 -19901907 + L1MB3 LINE L1 5790 6171 -12 318 356 64 42 chrY 4811192 4811428 -19901651 + L1MCa LINE L1 1964 2204 -4222 23 68 0 0 chrY 4811428 4811472 -19901607 + AT_rich Low_complexity Low_complexity 1 44 0 270 294 17 6 chrY 4811523 4811700 -19901379 + (TA)n Simple_repeat Simple_repeat 2 180 0 21 0 0 0 chrY 4811705 4811726 -19901353 + AT_rich Low_complexity Low_complexity 1 21 0 690 168 10 122 chrY 4812522 4812582 -19900497 - L1MB5 LINE L1 -1 6179 6114 1685 174 10 3 chrY 4812582 4812876 -19900203 - AluJo SINE Alu -16 296 1 690 168 10 122 chrY 4812876 4813011 -19900068 - L1MB5 LINE L1 -66 6114 6006 468 215 116 16 chrY 4813011 4813132 -19899947 - MLT1C LTR MaLR -327 140 8 1286 222 36 13 chrY 4814090 4814254 -19898825 - AluJo SINE Alu -3 309 133 1925 124 7 0 chrY 4814254 4814536 -19898543 - AluSq SINE Alu -20 293 10 1286 222 36 13 chrY 4814536 4814673 -19898406 - AluJo SINE Alu -179 133 1 39 68 0 0 chrY 4815050 4815124 -19897955 + AT_rich Low_complexity Low_complexity 1 74 0 1149 158 87 0 chrY 4815445 4815641 -19897438 - LTR36 LTR ERV1 0 611 399 1633 149 23 0 chrY 4815794 4816056 -19897023 - AluSg SINE Alu -36 274 7 27 49 0 0 chrY 4816126 4816167 -19896912 + AT_rich Low_complexity Low_complexity 1 41 0 1776 167 40 12 chrY 4816174 4816503 -19896576 - L1PA15 LINE L1 -13 6152 5815 614 182 9 0 chrY 4817263 4817373 -19895706 + HY1 scRNA scRNA 1 111 -1 4188 121 16 3 chrY 4817558 4817675 -19895404 - MER41B LTR ERV1 0 635 521 1804 131 21 0 chrY 4817675 4817957 -19895122 + AluSc SINE Alu 22 309 0 4188 121 16 3 chrY 4817957 4818466 -19894613 - MER41B LTR ERV1 -114 521 1 822 147 11 17 chrY 4819491 4819668 -19893411 + (TCCA)n Simple_repeat Simple_repeat 2 177 0 485 241 29 3 chrY 4819762 4820111 -19892968 + (TCTA)n Simple_repeat Simple_repeat 1 358 0 1604 117 72 19 chrY 4820245 4820509 -19892570 + AluSp SINE Alu 1 278 -35 216 0 0 0 chrY 4820516 4820540 -19892539 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 21 36 0 0 chrY 4820811 4820839 -19892240 + AT_rich Low_complexity Low_complexity 1 28 0 222 176 0 59 chrY 4820906 4820974 -19892105 + (TATAA)n Simple_repeat Simple_repeat 1 64 0 1763 139 3 10 chrY 4821001 4821296 -19891783 + AluSq SINE Alu 3 295 -18 1378 216 0 16 chrY 4822555 4822861 -19890218 + AluJo SINE Alu 1 301 -11 637 284 11 84 chrY 4823190 4823453 -19889626 - Charlie1 DNA MER1_type -4 2757 2537 1485 154 16 46 chrY 4823453 4823759 -19889320 + AluJb SINE Alu 1 297 -15 637 284 11 84 chrY 4823759 4823935 -19889144 - Charlie1 DNA MER1_type -224 2537 2350 1789 152 13 13 chrY 4824169 4824478 -19888601 - AluSx SINE Alu -3 309 1 1782 149 13 16 chrY 4824842 4825150 -19887929 - AluJo SINE Alu -4 308 2 1546 168 7 46 chrY 4825152 4825455 -19887624 - AluJo SINE Alu -19 293 3 1903 147 3 0 chrY 4825457 4825750 -19887329 - AluJo SINE Alu -18 294 1 1168 240 102 37 chrY 4826741 4827174 -19885905 - MLT1C LTR MaLR -1 466 6 1717 168 145 18 chrY 4827461 4827841 -19885238 + MSTA LTR MaLR 1 428 0 23 54 0 0 chrY 4827890 4827927 -19885152 + AT_rich Low_complexity Low_complexity 1 37 0 938 194 20 10 chrY 4828182 4828378 -19884701 + AluJo SINE Alu 97 294 -18 1308 186 0 77 chrY 4828477 4828788 -19884291 + AluJo SINE Alu 5 291 -21 451 129 0 0 chrY 4829026 4829088 -19883991 - AluSg/x SINE Alu -38 272 211 1672 169 4 0 chrY 4829192 4829465 -19883614 - AluSx SINE Alu -38 274 1 423 149 0 0 chrY 4829465 4829539 -19883540 + (TACTG)n Simple_repeat Simple_repeat 4 77 0 957 215 14 9 chrY 4829561 4829784 -19883295 - AluJb SINE Alu -2 310 87 5521 139 9 71 chrY 4829788 4830598 -19882481 - L1MA5A LINE L1 0 6297 5438 1732 158 3 26 chrY 4830598 4830908 -19882171 + AluJb SINE Alu 2 304 -8 411 123 0 0 chrY 4830845 4830910 -19882169 + Alu SINE Alu 242 306 -6 * 5521 139 9 71 chrY 4830908 4830972 -19882107 - L1MA5A LINE L1 -859 5438 5372 1983 126 10 3 chrY 4830972 4831261 -19881818 - AluSq SINE Alu -3 310 23 5521 139 9 71 chrY 4831261 4831480 -19881599 - L1MA5A LINE L1 -925 5372 5271 1625 189 7 13 chrY 4833155 4833462 -19879617 + AluJo SINE Alu 1 305 -7 207 0 0 0 chrY 4833462 4833485 -19879594 + (TG)n Simple_repeat Simple_repeat 2 24 0 228 35 0 0 chrY 4833507 4833536 -19879543 + (CA)n Simple_repeat Simple_repeat 2 30 0 476 183 119 71 chrY 4833884 4834010 -19879069 - FLAM_C SINE Alu -1 132 1 1459 184 24 24 chrY 4834513 4834807 -19878272 - AluJo SINE Alu -14 298 5 216 62 42 21 chrY 4834897 4834945 -19878134 + (CAA)n Simple_repeat Simple_repeat 3 51 0 1505 168 7 46 chrY 4835918 4836203 -19876876 - AluSx SINE Alu -10 302 29 658 283 5 24 chrY 4836289 4836494 -19876585 - L1MB8 LINE L1 0 6178 5978 524 65 0 0 chrY 4836494 4836556 -19876523 - Charlie3 DNA MER1_type -4 2706 2645 * 1524 158 12 20 chrY 4836553 4836800 -19876279 - Charlie3 DNA MER1_type -2464 246 2 1306 226 10 3 chrY 4836801 4837110 -19875969 - L1MB8 LINE L1 -193 5985 5675 1255 219 90 42 chrY 4837452 4837862 -19875217 - MLT1C LTR MaLR -16 451 22 1101 209 85 42 chrY 4837893 4838223 -19874856 - MLT1C LTR MaLR -123 344 1 2789 181 42 49 chrY 4838624 4838800 -19874279 - L1MA8 LINE L1 -1 6290 6114 814 144 8 0 chrY 4838800 4838925 -19874154 - FLAM_C SINE Alu -6 127 2 2789 181 42 49 chrY 4838925 4839173 -19873906 - L1MA8 LINE L1 -177 6114 5866 1401 181 96 4 chrY 4839173 4839454 -19873625 - AluSx SINE Alu -3 309 3 2789 181 42 49 chrY 4839454 4839737 -19873342 - L1MA8 LINE L1 -425 5866 5587 32 57 0 0 chrY 4840354 4840407 -19872672 + AT_rich Low_complexity Low_complexity 1 53 0 376 178 25 6 chrY 4840542 4840699 -19872380 + (TA)n Simple_repeat Simple_repeat 1 160 0 1606 208 3 3 chrY 4840708 4841006 -19872073 + AluJo SINE Alu 2 299 -13 652 219 16 1 chrY 4841006 4841261 -19871818 - Tigger3(Golem) DNA MER2_type -2738 291 1 232 94 0 125 chrY 4841264 4841282 -19871797 + (CA)n Simple_repeat Simple_repeat 2 21 -36 1731 188 3 7 chrY 4841282 4841574 -19871505 - AluJb SINE Alu -17 295 5 232 94 0 125 chrY 4841574 4841619 -19871460 + (CA)n Simple_repeat Simple_repeat 21 57 0 228 189 38 0 chrY 4841654 4841707 -19871372 + L1MC4 LINE L1 6649 6703 -1339 280 133 33 44 chrY 4841708 4841798 -19871281 + (TATATG)n Simple_repeat Simple_repeat 2 90 0 239 141 141 0 chrY 4841800 4841871 -19871208 - L1MC3 LINE L1 -1137 6648 6568 400 174 0 37 chrY 4841875 4841984 -19871095 + (TATATG)n Simple_repeat Simple_repeat 6 110 0 230 297 25 55 chrY 4842613 4842751 -19870328 + MIR SINE MIR 28 162 -46 949 168 9 24 chrY 4843322 4843520 -19869559 - L1MA4A LINE L1 -342 5963 5766 809 159 8 0 chrY 4843537 4843669 -19869410 - FLAM_C SINE Alu 0 133 1 296 116 0 0 chrY 4843669 4843712 -19869367 - L1MA4A LINE L1 -505 5786 5744 1672 208 0 0 chrY 4843929 4844222 -19868857 + AluSx SINE Alu 3 295 -17 2031 122 0 0 chrY 4844223 4844494 -19868585 + AluSc SINE Alu 22 292 -17 252 278 28 0 chrY 4844525 4844597 -19868482 - MIR SINE MIR -119 143 70 3082 157 10 40 chrY 4844610 4844664 -19868415 - L1MA4A LINE L1 -27 6276 6222 2010 144 0 16 chrY 4844664 4844976 -19868103 + AluSg1 SINE Alu 1 307 -2 3082 157 10 40 chrY 4844976 4845326 -19867753 - L1MA4A LINE L1 -81 6222 5890 1815 159 44 0 chrY 4845326 4845622 -19867457 - AluSx SINE Alu -3 309 1 3082 157 10 40 chrY 4845622 4845814 -19867265 - L1MA4A LINE L1 -413 5890 5694 2019 153 0 10 chrY 4845952 4846252 -19866827 - AluSx SINE Alu -13 299 3 516 226 50 91 chrY 4846398 4846630 -19866449 - L1MC4a LINE L1 -1759 6049 5830 2130 129 0 0 chrY 4846630 4846925 -19866154 - AluSx SINE Alu -17 295 1 516 226 50 91 chrY 4846925 4846989 -19866090 - L1MC4a LINE L1 -1978 5830 5765 1711 172 0 14 chrY 4847006 4847296 -19865783 - AluJo SINE Alu -26 286 1 33 0 0 0 chrY 4848137 4848170 -19864909 + AT_rich Low_complexity Low_complexity 1 33 0 2085 145 0 0 chrY 4849245 4849549 -19863530 - AluSc SINE Alu -5 304 1 1979 122 18 4 chrY 4849606 4849912 -19863167 - AluSx SINE Alu 0 310 1 2174 105 14 3 chrY 4850120 4850416 -19862663 + AluSc SINE Alu 1 299 -10 1527 202 24 3 chrY 4850665 4850952 -19862127 + AluJb SINE Alu 1 293 -19 1798 128 4 0 chrY 4850955 4851206 -19861873 + AluSq SINE Alu 1 252 -61 189 0 0 0 chrY 4851745 4851766 -19861313 + (TG)n Simple_repeat Simple_repeat 2 22 0 1696 180 3 30 chrY 4852156 4852456 -19860623 + AluJb SINE Alu 1 292 -20 1649 162 28 28 chrY 4853600 4853890 -19859189 + AluJb SINE Alu 14 303 -9 686 210 0 0 chrY 4853972 4854091 -19858988 + FLAM_C SINE Alu 14 132 -11 680 140 0 9 chrY 4854405 4854512 -19858567 + U6 snRNA snRNA 2 107 0 2025 119 7 7 chrY 4855105 4855399 -19857680 + AluSx SINE Alu 17 310 -2 247 219 110 0 chrY 4857340 4857413 -19855666 - MER58 DNA MER1_type 0 2420 2340 491 227 0 0 chrY 4857440 4857537 -19855542 + AluJo SINE Alu 6 102 -210 30 45 0 0 chrY 4857898 4857942 -19855137 + AT_rich Low_complexity Low_complexity 1 44 0 759 176 0 16 chrY 4858110 4858235 -19854844 + AluJo SINE Alu 90 212 -100 342 0 0 0 chrY 4858237 4858275 -19854804 + (TG)n Simple_repeat Simple_repeat 2 39 0 204 144 68 34 chrY 4858275 4858393 -19854686 + (TAGA)n Simple_repeat Simple_repeat 2 123 0 1004 177 32 45 chrY 4858425 4858645 -19854434 - MER20 DNA MER1_type -1 218 2 541 310 110 32 chrY 4859090 4859605 -19853474 + L2 LINE L2 2729 3286 -27 2237 110 3 7 chrY 4859785 4860094 -19852985 + AluSq SINE Alu 1 308 -5 1713 178 0 14 chrY 4860792 4861102 -19851977 + AluJo SINE Alu 2 307 0 273 257 0 54 chrY 4861150 4861224 -19851855 + MER63 DNA MER1_type 672 741 -321 21350 110 22 10 chrY 4861224 4865062 -19848017 - HERV9 LTR ERV1 -4429 3970 1 4355 71 138 133 chrY 4865062 4865884 -19847195 - LTR12 LTR ERV1 0 826 1 3175 203 27 34 chrY 4865885 4866166 -19846913 + MER4D LTR ERV1 195 476 -427 2079 137 10 3 chrY 4866166 4866472 -19846607 + AluSq SINE Alu 1 308 -5 3175 203 27 34 chrY 4866472 4866567 -19846512 + MER4D LTR ERV1 476 570 -333 4511 144 27 23 chrY 4866567 4867343 -19845736 + MER4E LTR ERV1 1 779 0 3175 203 27 34 chrY 4867343 4867679 -19845400 + MER4D LTR ERV1 570 903 0 1167 169 41 9 chrY 4867855 4868074 -19845005 - MER41C LTR ERV1 0 554 329 1281 182 37 21 chrY 4868138 4868434 -19844645 + LTR10B LTR ERV1 306 547 0 1788 241 97 65 chrY 4868564 4869275 -19843804 + HERV17 LTR ERV1 405 1138 -6647 5646 268 23 28 chrY 4869337 4871280 -19841799 + HERV17 LTR ERV1 937 3284 -3963 584 248 0 0 chrY 4871280 4871393 -19841686 + HERV17 LTR ERV1 1062 1174 -7452 6665 28 1 11 chrY 4871397 4872184 -19840895 - L1PA3 LINE L1 -2 6153 5375 3799 48 15 1 chrY 4872184 4872701 -19840378 + L1M LINE L1 4863 5387 -796 7492 280 50 60 chrY 4872701 4876401 -19836678 + HERV17 LTR ERV1 2985 6649 0 1220 174 53 24 chrY 4876483 4876776 -19836303 + LTR10B LTR ERV1 306 547 0 * 1832 180 56 3 chrY 4876776 4877111 -19835968 - MER41C LTR ERV1 -201 353 1 2765 159 20 70 chrY 4877163 4877302 -19835777 - MER1A DNA MER1_type -2173 527 383 2206 141 0 3 chrY 4877302 4877615 -19835464 - AluSp SINE Alu -1 312 1 2765 159 20 70 chrY 4877615 4877963 -19835116 - MER1A DNA MER1_type -2317 383 69 2940 13 0 0 chrY 4877963 4878281 -19834798 - AluYb8 SINE Alu 0 318 1 2765 159 20 70 chrY 4878281 4878347 -19834732 - MER1A DNA MER1_type -2631 69 1 467 179 0 0 chrY 4878726 4878810 -19834269 - MER4B LTR ERV1 -163 447 364 23 0 0 0 chrY 4878822 4878845 -19834234 + AT_rich Low_complexity Low_complexity 1 23 0 302 248 50 0 chrY 4878847 4878948 -19834131 + CT-rich Low_complexity Low_complexity 3 108 0 375 182 23 45 chrY 4878969 4879145 -19833934 + CT-rich Low_complexity Low_complexity 3 174 0 1483 186 65 4 chrY 4879745 4880020 -19833059 - AluSx SINE Alu -19 293 2 234 302 50 36 chrY 4880027 4880166 -19832913 + LTR16C LTR ERVL 349 489 -2 2634 106 5 13 chrY 4880412 4880790 -19832289 + THE1C LTR MaLR 1 375 0 235 375 0 32 chrY 4880845 4881061 -19832018 + L1P LINE L1 4884 5092 -1054 278 296 61 64 chrY 4881265 4881610 -19831469 + L1ME LINE L1 5317 5660 -502 555 302 65 42 chrY 4881948 4882256 -19830823 + L2 LINE L2 2995 3309 -4 397 0 0 0 chrY 4882508 4882552 -19830527 + (TTTA)n Simple_repeat Simple_repeat 2 156 0 1369 149 0 9 chrY 4882552 4882767 -19830312 - AluSg/x SINE Alu -1 326 71 13787 135 11 23 chrY 4882767 4885396 -19827683 + L1P3 LINE L1 671 3284 -3177 586 126 29 58 chrY 4885596 4885699 -19827380 + AluS SINE Alu 1 100 -212 698 264 44 0 chrY 4886111 4886293 -19826786 - MER20 DNA MER1_type 0 219 30 2439 139 25 5 chrY 4887104 4887472 -19825607 - THE1C LTR MaLR 0 375 1 2011 121 55 0 chrY 4888644 4888933 -19824146 - AluSx SINE Alu -4 308 4 2013 187 19 8 chrY 4889068 4889427 -19823652 - MLT1A1 LTR MaLR -2 363 1 2012 164 0 0 chrY 4889843 4890155 -19822924 - AluSx SINE Alu 0 312 1 245 29 29 0 chrY 4890489 4890523 -19822556 + (TAA)n Simple_repeat Simple_repeat 2 36 0 1802 150 0 33 chrY 4891736 4892043 -19821036 + AluJo SINE Alu 13 309 -3 993 219 24 5 chrY 4892768 4892978 -19820101 + AluJb SINE Alu 73 286 -26 341 236 19 19 chrY 4892978 4893135 -19819944 + (TA)n Simple_repeat Simple_repeat 2 158 0 293 231 7 0 chrY 4893156 4893303 -19819776 + (TA)n Simple_repeat Simple_repeat 1 148 0 21 0 0 0 chrY 4893351 4893372 -19819707 + AT_rich Low_complexity Low_complexity 1 21 0 407 108 0 83 chrY 4895355 4895512 -19817567 + (TA)n Simple_repeat Simple_repeat 2 145 0 1308 180 47 77 chrY 4895529 4895651 -19817428 + AluJo SINE Alu 1 125 -187 1937 156 0 10 chrY 4895651 4895958 -19817121 - AluSg SINE Alu -6 304 1 1308 180 47 77 chrY 4895958 4896135 -19816944 + AluJo SINE Alu 125 291 -21 509 174 0 31 chrY 4896307 4896405 -19816674 + L1PB4 LINE L1 6058 6152 -4 668 224 85 13 chrY 4896902 4896924 -19816155 - MLT1A1 LTR MaLR 0 390 371 2277 134 64 0 chrY 4896924 4897266 -19815813 - THE1B LTR MaLR 0 364 1 668 224 85 13 chrY 4897266 4897441 -19815638 - MLT1A1 LTR MaLR -19 371 178 345 82 0 0 chrY 4897441 4897490 -19815589 + (GA)n Simple_repeat Simple_repeat 1 49 0 1019 250 51 46 chrY 4897518 4897889 -19815190 + MLT2B1 LTR ERVL 3 428 -92 708 178 59 15 chrY 4897889 4898024 -19815055 - AluJo SINE Alu -49 263 123 300 274 118 0 chrY 4898073 4898175 -19814904 + L2 LINE L2 3197 3310 -3 296 277 42 25 chrY 4898461 4898580 -19814499 - MLT1H LTR MaLR 0 549 429 * 484 236 18 0 chrY 4898575 4898685 -19814394 + MER20 DNA MER1_type 90 201 -18 237 152 22 0 chrY 4898741 4898787 -19814292 + T-rich Low_complexity Low_complexity 3 49 0 568 173 19 10 chrY 4898787 4898891 -19814188 - U6 snRNA snRNA -2 105 1 427 312 27 25 chrY 4899116 4899340 -19813739 - MLT1H LTR MaLR -3 548 321 651 208 92 82 chrY 4899362 4899665 -19813414 + MLT1H1 LTR MaLR 242 547 -8 191 222 93 0 chrY 4900910 4900964 -19812115 - L2 LINE L2 0 3313 3255 500 126 29 46 chrY 4901424 4901599 -19811480 + (TAGA)n Simple_repeat Simple_repeat 3 174 0 343 187 23 41 chrY 4901649 4901820 -19811259 + (TAGA)n Simple_repeat Simple_repeat 3 170 0 1419 138 14 0 chrY 4901998 4902215 -19810864 + L1MA7 LINE L1 5682 5901 -390 1465 48 4 83 chrY 4902215 4902445 -19810634 - LTR66 LTR ERVL 0 610 399 255 0 86 74 chrY 4902455 4902536 -19810543 + (TA)n Simple_repeat Simple_repeat 2 83 0 2610 107 85 17 chrY 4902543 4902954 -19810125 - LTR66 LTR ERVL -168 442 4 672 226 45 6 chrY 4903012 4903189 -19809890 - MER20 DNA MER1_type -6 213 30 623 259 0 0 chrY 4903331 4903462 -19809617 + FLAM_A SINE Alu 1 131 -2 1406 185 83 4 chrY 4903465 4903741 -19809338 + AluJb SINE Alu 1 298 -14 7411 161 25 10 chrY 4903741 4904994 -19808085 + L1PA5 LINE L1 2 1274 -4872 * 20523 66 3 1 chrY 4904985 4909543 -19803536 + L1PA5 LINE L1 1490 6151 -3 3954 148 21 14 chrY 4909685 4910314 -19802765 + MER41B LTR ERV1 1 633 -2 1526 184 0 53 chrY 4910722 4910915 -19802164 - AluJo SINE Alu -9 303 132 2069 118 0 39 chrY 4910915 4911221 -19801858 + AluY SINE Alu 5 298 -13 1526 184 0 53 chrY 4911221 4911347 -19801732 - AluJo SINE Alu -180 132 1 1875 194 20 17 chrY 4911356 4911759 -19801320 - L1MA3 LINE L1 0 6305 5902 1995 141 35 55 chrY 4911782 4912001 -19801078 - L1PB3 LINE L1 0 6154 5943 1797 168 0 3 chrY 4912001 4912287 -19800792 - AluJb SINE Alu -23 289 5 1995 141 35 55 chrY 4912287 4912415 -19800664 - L1PB3 LINE L1 -211 5943 5814 756 226 83 6 chrY 4912442 4912623 -19800456 + MER20 DNA MER1_type 25 219 0 1693 173 53 0 chrY 4912628 4912911 -19800168 + AluSq SINE Alu 1 298 -15 1520 193 48 34 chrY 4913102 4913234 -19799845 - L1MA9 LINE L1 0 6312 6183 1971 145 7 3 chrY 4913234 4913531 -19799548 - AluSq SINE Alu -15 298 1 1520 193 48 34 chrY 4913531 4913756 -19799323 - L1MA9 LINE L1 -129 6183 5950 * 1731 188 3 87 chrY 4913753 4914289 -19798790 + L1MA9 LINE L1 4926 5419 -805 2166 137 0 13 chrY 4914289 4914604 -19798475 + AluSx SINE Alu 2 312 0 1731 188 3 87 chrY 4914604 4914663 -19798416 + L1MA9 LINE L1 5419 5481 -743 412 240 29 0 chrY 4915003 4915107 -19797972 + L1MA9 LINE L1 6019 6125 -187 * 516 116 0 23 chrY 4915095 4915181 -19797898 + L1PB1 LINE L1 5708 5791 -360 207 0 0 0 chrY 4915186 4915209 -19797870 + (GA)n Simple_repeat Simple_repeat 2 24 0 739 152 0 0 chrY 4915210 4915315 -19797764 - AluSq/x SINE Alu -202 111 7 2503 133 3 3 chrY 4915320 4915688 -19797391 + L1PB1 LINE L1 5782 6149 -2 570 257 22 28 chrY 4915718 4915897 -19797182 + L1MA9 LINE L1 6097 6274 -38 1617 184 13 25 chrY 4915920 4916236 -19796843 + AluJo SINE Alu 1 312 0 207 0 0 0 chrY 4916963 4916986 -19796093 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 3075 72 2 25 chrY 4917125 4917528 -19795551 - L1PA10 LINE L1 -294 5874 5481 1350 98 62 0 chrY 4917533 4917726 -19795353 + L1PA10 LINE L1 5960 6164 -4 2422 58 0 7 chrY 4917963 4918257 -19794822 - AluY SINE Alu -17 294 3 189 0 0 0 chrY 4918263 4918284 -19794795 + (T)n Simple_repeat Simple_repeat 1 21 0 1699 233 6 0 chrY 4918284 4918640 -19794439 + L1MB5 LINE L1 5816 6173 -1 1765 160 4 4 chrY 4918647 4918949 -19794130 + AluSx SINE Alu 1 302 0 1181 88 0 11 chrY 4919027 4919209 -19793870 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 685 157 7 14 chrY 4919214 4919354 -19793725 + CT-rich Low_complexity Low_complexity 4 142 0 552 126 0 0 chrY 4920266 4920353 -19792726 + (GGGA)n Simple_repeat Simple_repeat 4 90 0 1713 177 17 20 chrY 4920814 4921114 -19791965 - AluJo SINE Alu -6 306 8 1899 177 0 3 chrY 4921132 4921431 -19791648 - AluSx SINE Alu -14 298 1 842 167 20 13 chrY 4921436 4921586 -19791493 - MLT1A1 LTR MaLR -214 151 1 1564 190 4 14 chrY 4922195 4922474 -19790605 - AluJb SINE Alu -24 288 13 2618 134 14 0 chrY 4923216 4923574 -19789505 + THE1B LTR MaLR 1 363 -1 804 249 31 52 chrY 4923961 4924190 -19788889 - MER58A DNA MER1_type 0 224 1 2089 125 0 0 chrY 4924231 4924539 -19788540 + AluSc SINE Alu 1 308 0 2167 170 40 5 chrY 4924695 4925072 -19788007 + MLT1B LTR MaLR 1 390 0 423 0 0 0 chrY 4926182 4926229 -19786850 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1848 158 29 0 chrY 4926231 4926510 -19786569 - AluSx SINE Alu -24 288 2 1543 204 3 13 chrY 4927147 4927451 -19785628 + AluJo SINE Alu 1 301 -11 201 94 0 0 chrY 4927524 4927556 -19785523 + (TTAA)n Simple_repeat Simple_repeat 3 34 0 897 174 0 43 chrY 4927556 4927643 -19785436 - AluJo SINE Alu -28 284 203 4038 70 63 4 chrY 4927643 4928170 -19784909 + LTR6B LTR ERV1 1 558 0 897 174 0 43 chrY 4928170 4928235 -19784844 - AluJo SINE Alu -109 203 137 863 207 61 15 chrY 4928304 4928502 -19784577 + MLT1D LTR MaLR 29 235 -270 372 148 11 66 chrY 4928502 4928685 -19784394 + (CAGAGA)n Simple_repeat Simple_repeat 2 174 0 503 179 0 13 chrY 4928742 4928893 -19784186 + (CAGAGA)n Simple_repeat Simple_repeat 2 150 0 241 200 52 52 chrY 4928900 4929015 -19784064 + MLT1D LTR MaLR 180 294 -211 1133 90 26 0 chrY 4929015 4929170 -19783909 + AluY SINE Alu 136 294 -17 1004 151 39 11 chrY 4929185 4929364 -19783715 - LTR43 LTR ERV1 -388 214 31 183 204 0 0 chrY 4930019 4930068 -19783011 + C-rich Low_complexity Low_complexity 4 52 0 584 162 30 0 chrY 4930068 4930167 -19782912 - FRAM SINE Alu -5 171 70 1838 145 37 0 chrY 4930216 4930513 -19782566 + Tigger3(Golem) DNA MER2_type 2721 3028 -1 1868 209 37 0 chrY 4930528 4930878 -19782201 + MLT1A1 LTR MaLR 3 365 0 378 221 0 13 chrY 4931926 4932003 -19781076 - LTR45B LTR ERV1 -390 99 24 29 37 0 19 chrY 4932361 4932395 -19780684 + AT_rich Low_complexity Low_complexity 1 35 -18 927 150 0 0 chrY 4932395 4932528 -19780551 - AluJo SINE Alu -169 133 1 29 37 0 19 chrY 4932528 4932547 -19780532 + AT_rich Low_complexity Low_complexity 35 53 0 306 315 0 11 chrY 4932725 4932817 -19780262 - L1MC4 LINE L1 -1335 6707 6617 2183 172 36 90 chrY 4932817 4933318 -19779761 + LTR45B LTR ERV1 6 479 -10 22 0 0 0 chrY 4933935 4933957 -19779122 + AT_rich Low_complexity Low_complexity 1 22 0 280 245 19 0 chrY 4934851 4934957 -19778122 + CT-rich Low_complexity Low_complexity 1 108 0 1365 219 28 15 chrY 4935279 4935604 -19777475 + L1MC3 LINE L1 7295 7623 -162 399 163 0 0 chrY 4935605 4935685 -19777394 + (ATG)n Simple_repeat Simple_repeat 1 80 0 * 918 126 6 27 chrY 4935683 4935866 -19777213 + (ATGGTG)n Simple_repeat Simple_repeat 1 179 0 278 173 62 37 chrY 4936100 4936181 -19776898 - MLT1J LTR MaLR -358 153 71 964 202 66 141 chrY 4936495 4936921 -19776158 + MSTD LTR MaLR 1 394 -2 195 42 0 0 chrY 4938196 4938220 -19774859 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 979 175 32 5 chrY 4939185 4939374 -19773705 + L1PA16 LINE L1 5964 6157 -9 370 261 39 15 chrY 4939426 4939556 -19773523 + MLT1D LTR MaLR 6 138 -367 440 308 15 0 chrY 4939915 4940045 -19773034 + MLT1D LTR MaLR 302 433 -72 1856 162 0 14 chrY 4940201 4940497 -19772582 + AluJo SINE Alu 3 294 -18 1299 203 11 39 chrY 4940653 4940934 -19772145 + AluJo SINE Alu 1 273 -39 210 37 0 0 chrY 4940934 4940961 -19772118 + (TC)n Simple_repeat Simple_repeat 1 27 0 298 280 15 23 chrY 4941811 4941943 -19771136 + (TCTA)n Simple_repeat Simple_repeat 3 133 0 349 117 51 36 chrY 4941954 4942091 -19770988 + (TCTA)n Simple_repeat Simple_repeat 4 142 0 451 130 56 25 chrY 4942103 4942265 -19770814 + (TCTA)n Simple_repeat Simple_repeat 4 170 0 2634 129 4 75 chrY 4943078 4943161 -19769918 - Tigger2a DNA MER2_type -2275 433 346 1710 127 70 0 chrY 4943161 4943420 -19769659 + AluSq SINE Alu 22 298 -15 2634 129 4 75 chrY 4943420 4943801 -19769278 - Tigger2a DNA MER2_type -2362 346 2 225 0 0 0 chrY 4944160 4944185 -19768894 + (TG)n Simple_repeat Simple_repeat 2 26 0 668 106 43 6 chrY 4944269 4944430 -19768649 + (TAGA)n Simple_repeat Simple_repeat 1 167 0 40 49 0 0 chrY 4945031 4945092 -19767987 + AT_rich Low_complexity Low_complexity 1 61 0 1115 142 0 0 chrY 4945092 4945254 -19767825 - AluSq SINE Alu -17 296 135 28 109 0 0 chrY 4945539 4945658 -19767421 + AT_rich Low_complexity Low_complexity 1 119 0 184 86 69 17 chrY 4945666 4945724 -19767355 + (TATAA)n Simple_repeat Simple_repeat 5 65 0 22 0 0 0 chrY 4945738 4945760 -19767319 + AT_rich Low_complexity Low_complexity 1 22 0 1380 113 9 14 chrY 4945760 4945982 -19767097 - Tigger2 DNA MER2_type -146 2572 2352 335 141 86 31 chrY 4946019 4946182 -19766897 + (TA)n Simple_repeat Simple_repeat 1 172 0 382 188 28 61 chrY 4946188 4946369 -19766710 + (TTATA)n Simple_repeat Simple_repeat 5 179 0 226 207 73 24 chrY 4946395 4946477 -19766602 + HSMAR1 DNA Mariner 1 86 -1201 226 218 61 14 chrY 4946477 4946624 -19766455 + (TTATA)n Simple_repeat Simple_repeat 1 154 0 217 318 39 39 chrY 4946752 4946906 -19766173 + L2 LINE L2 2633 2786 -528 1451 159 28 0 chrY 4947351 4947603 -19765476 - L1MA4A LINE L1 0 6303 6045 3498 108 4 16 chrY 4947761 4948263 -19764816 + MER1A DNA MER1_type 34 529 0 1945 163 3 0 chrY 4948649 4948956 -19764123 - AluSx SINE Alu -4 308 1 1301 148 13 0 chrY 4949344 4949573 -19763506 - MLT1B LTR MaLR 0 390 159 1152 157 10 12 chrY 4949574 4949791 -19763288 - MLT1B LTR MaLR 0 467 175 10197 89 8 0 chrY 4949927 4952012 -19761067 - L1PA5 LINE L1 -4 6150 4041 24121 107 14 14 chrY 4952012 4955696 -19757383 - L1P LINE L1 -1678 4468 11 6836 99 2 62 chrY 4955959 4957202 -19755877 - L1PA7 LINE L1 -6 6148 4932 1350 221 78 7 chrY 4957389 4957554 -19755525 - AluJo SINE Alu 0 302 107 189 0 0 0 chrY 4957554 4957575 -19755504 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 1350 221 78 7 chrY 4957575 4957690 -19755389 - AluJo SINE Alu -195 107 2 1053 166 6 11 chrY 4958400 4958581 -19754498 + AluJo SINE Alu 1 180 -132 2624 141 9 19 chrY 4958799 4959219 -19753860 + L1PB4 LINE L1 5739 6154 -2 224 342 0 0 chrY 4959485 4959561 -19753518 - MER5A DNA MER1_type -84 105 30 281 215 11 65 chrY 4959597 4959690 -19753389 - MER3 DNA MER1_type -1 208 121 603 209 72 0 chrY 4959717 4959870 -19753209 - MER3 DNA MER1_type -44 165 2 474 270 106 86 chrY 4960412 4960819 -19752260 - MLT1J2 LTR MaLR -11 439 25 680 335 48 15 chrY 4960854 4961235 -19751844 + L1ME3A LINE L1 5497 5893 -277 2035 167 21 11 chrY 4961875 4962247 -19750832 + L1MA7 LINE L1 5841 6216 -75 1932 155 0 0 chrY 4962248 4962538 -19750541 + AluSx SINE Alu 1 290 -22 813 177 0 43 chrY 4962549 4962735 -19750344 + L1MA7 LINE L1 6114 6291 0 592 200 33 16 chrY 4962891 4963098 -19749981 - MLT2B1 LTR ERVL -95 425 269 532 238 42 8 chrY 4963076 4963251 -19749828 - MLT2B1 LTR ERVL -123 397 267 * 602 219 21 141 chrY 4963226 4963468 -19749611 - MLT2B1 LTR ERVL -130 390 178 955 51 0 0 chrY 4963483 4963601 -19749478 - L1P5 LINE L1 -471 5680 5563 619 215 25 19 chrY 4963676 4963834 -19749245 - MLT2D LTR ERVL -255 159 1 220 231 39 0 chrY 4963834 4963886 -19749193 + (CATG)n Simple_repeat Simple_repeat 2 55 0 3527 154 2 9 chrY 4965563 4966094 -19746985 - MER1A DNA MER1_type 0 527 1 664 272 85 13 chrY 4966124 4966348 -19746731 + MLT1C LTR MaLR 218 457 -10 201 74 0 0 chrY 4966348 4966375 -19746704 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 393 203 16 8 chrY 4967159 4967282 -19745797 + CT-rich Low_complexity Low_complexity 3 126 0 690 143 9 9 chrY 4967294 4967399 -19745680 - AluSq/x SINE Alu -205 107 3 606 23 34 0 chrY 4967419 4967507 -19745572 + (TA)n Simple_repeat Simple_repeat 1 91 0 187 118 0 39 chrY 4967541 4967592 -19745487 + (TAA)n Simple_repeat Simple_repeat 2 50 0 * 274 182 34 23 chrY 4967586 4967762 -19745317 + (TATAA)n Simple_repeat Simple_repeat 2 179 0 293 190 34 62 chrY 4967797 4967976 -19745103 + (TATAA)n Simple_repeat Simple_repeat 5 178 0 2063 152 3 0 chrY 4967978 4968287 -19744792 + AluSx SINE Alu 1 310 -2 1856 206 33 23 chrY 4968302 4968729 -19744350 + L1MA8 LINE L1 5836 6266 -25 1965 151 28 0 chrY 4968867 4969158 -19743921 + AluSx SINE Alu 1 299 -13 321 300 132 21 chrY 4969356 4969599 -19743480 - MER97b DNA MER1_type? -735 318 49 233 232 0 0 chrY 4969650 4969706 -19743373 + T-rich Low_complexity Low_complexity 1 56 0 189 0 0 0 chrY 4969740 4969761 -19743318 + (TA)n Simple_repeat Simple_repeat 1 21 0 21 0 0 0 chrY 4969761 4969782 -19743297 + AT_rich Low_complexity Low_complexity 1 21 0 1946 171 0 0 chrY 4969782 4970091 -19742988 + AluSx SINE Alu 1 309 -3 1621 135 0 0 chrY 4970144 4970374 -19742705 + AluSg/x SINE Alu 69 298 -14 515 157 45 0 chrY 4970374 4970463 -19742616 - L1MA5A LINE L1 -12 6285 6193 1704 166 35 7 chrY 4970732 4971016 -19742063 + AluJo SINE Alu 1 292 -20 765 179 22 22 chrY 4971272 4971406 -19741673 + AluJo SINE Alu 3 136 -176 243 0 0 0 chrY 4972059 4972086 -19740993 + (T)n Simple_repeat Simple_repeat 1 27 0 2100 177 111 2 chrY 4973950 4974363 -19738716 + L1PA16 LINE L1 5708 6165 -1 203 370 4 0 chrY 4974652 4974739 -19738340 - MIR SINE MIR -74 134 45 595 181 23 12 chrY 4974839 4975010 -19738069 + CT-rich Low_complexity Low_complexity 3 175 0 1541 215 3 14 chrY 4975031 4975319 -19737760 - AluJo SINE Alu -15 287 3 894 194 6 0 chrY 4975324 4975489 -19737590 - L1M3 LINE L1 -554 5780 5615 3393 162 91 57 chrY 4975587 4976290 -19736789 - LTR8A LTR ERV1 0 727 1 1400 177 113 78 chrY 4976322 4976757 -19736322 + LTR7 LTR ERV1 1 450 0 14898 184 78 88 chrY 4976757 4980928 -19732151 + HERVH LTR ERV1 1 4125 -3588 2438 40 40 0 chrY 4980928 4981225 -19731854 - AluY SINE Alu -2 309 1 14898 184 78 88 chrY 4981225 4981648 -19731431 + HERVH LTR ERV1 4125 4551 -3162 1458 164 19 0 chrY 4981639 4981895 -19731184 + HERVH LTR ERV1 5756 6016 -1697 * 3869 106 5 5 chrY 4981888 4982445 -19730634 + HERVH LTR ERV1 7157 7713 0 1457 171 117 61 chrY 4982445 4982871 -19730208 + LTR7 LTR ERV1 1 450 0 1756 153 0 38 chrY 4982937 4983251 -19729828 - AluJo SINE Alu 0 312 11 21 36 0 0 chrY 4983771 4983799 -19729280 + AT_rich Low_complexity Low_complexity 1 28 0 226 219 195 49 chrY 4983950 4984032 -19729047 - MIR3 SINE MIR -5 203 110 1890 166 0 3 chrY 4984084 4984386 -19728693 - AluJb SINE Alu -11 301 1 2252 141 55 66 chrY 4984899 4984980 -19728099 + MER4E LTR ERV1 1 81 -698 2021 137 17 0 chrY 4984980 4985273 -19727806 + AluSx SINE Alu 1 298 -14 2252 141 55 66 chrY 4985273 4985812 -19727267 + MER4E LTR ERV1 81 779 0 11274 113 7 5 chrY 4985955 4987630 -19725449 - L1PA7 LINE L1 -1274 4872 3195 3198 118 27 1 chrY 4987629 4988246 -19724833 + L1PA7 LINE L1 4854 5489 -683 * 1591 112 21 156 chrY 4988247 4988351 -19724728 + AluYb8 SINE Alu 1 117 -201 4001 100 0 4 chrY 4988351 4988860 -19724219 + MER9 LTR ERVK 1 507 -4 1591 112 21 156 chrY 4988860 4989095 -19723984 + AluYb8 SINE Alu 117 294 -24 5029 79 39 17 chrY 4989095 4989756 -19723323 + L1PA7 LINE L1 5476 6151 -3 261 0 0 0 chrY 4990009 4990038 -19723041 + (CAAAA)n Simple_repeat Simple_repeat 3 31 0 2145 122 3 0 chrY 4990069 4990363 -19722716 + AluY SINE Alu 1 295 -16 363 154 0 0 chrY 4991232 4991297 -19721782 - L1MD2 LINE L1 -7 6352 6288 1661 163 7 7 chrY 4991297 4991567 -19721512 + AluSq SINE Alu 38 307 -6 937 138 28 44 chrY 4991584 4991648 -19721431 - L1MD1 LINE L1 -55 6187 6123 4568 120 16 2 chrY 4991648 4992274 -19720805 - MER41B LTR ERV1 0 635 1 937 138 28 44 chrY 4992274 4992390 -19720689 - L1MD1 LINE L1 -119 6123 6010 1297 225 77 20 chrY 4992534 4992574 -19720505 - MLT1A1 LTR MaLR 0 365 329 2281 147 30 22 chrY 4992574 4992935 -19720144 + THE1B LTR MaLR 1 364 0 1297 225 77 20 chrY 4992935 4993192 -19719887 - MLT1A1 LTR MaLR -36 329 51 2176 160 47 32 chrY 4993192 4993729 -19719350 - MLT2A2 LTR ERVL 0 554 1 302 185 62 15 chrY 4993729 4993785 -19719294 - MLT1A1 LTR MaLR -306 59 1 449 238 38 0 chrY 4994948 4995053 -19718026 - L1MA4A LINE L1 -259 6044 5936 743 151 0 24 chrY 4995055 4995206 -19717873 - AluJb SINE Alu 0 337 190 626 179 104 8 chrY 4995266 4995350 -19717729 + L1MA4A LINE L1 6084 6187 -116 1785 157 22 29 chrY 4995350 4995663 -19717416 + AluJo SINE Alu 1 311 -1 626 179 104 8 chrY 4995663 4995712 -19717367 + L1MA4A LINE L1 6187 6230 -73 1049 245 0 12 chrY 4996040 4996293 -19716786 + L1MA8 LINE L1 6042 6291 0 293 297 13 0 chrY 4996349 4996653 -19716426 + (TA)n Simple_repeat Simple_repeat 1 308 0 260 268 0 7 chrY 4996672 4996810 -19716269 + (TA)n Simple_repeat Simple_repeat 1 137 0 257 347 0 0 chrY 4996821 4996919 -19716160 + (TA)n Simple_repeat Simple_repeat 2 99 0 270 43 0 130 chrY 4997563 4997576 -19715503 + L1P4 LINE L1 5729 5742 -426 2038 157 13 46 chrY 4997576 4997762 -19715317 + THE1C LTR MaLR 1 169 -206 1916 142 3 3 chrY 4997762 4998057 -19715022 + AluSq SINE Alu 1 295 -18 2038 157 13 46 chrY 4998057 4998258 -19714821 + THE1C LTR MaLR 169 375 0 270 43 0 130 chrY 4998258 4998290 -19714789 + L1P4 LINE L1 5742 5768 -400 2119 112 78 6 chrY 4998292 4998614 -19714465 + L1PA13 LINE L1 5819 6163 0 894 100 0 0 chrY 4998731 4998851 -19714228 - AluSg/x SINE Alu -3 306 187 1384 176 4 12 chrY 4999398 4999642 -19713437 + AluJb SINE Alu 68 309 -3 26 30 0 0 chrY 4999696 4999729 -19713350 + AT_rich Low_complexity Low_complexity 1 33 0 375 23 0 0 chrY 4999880 4999924 -19713155 + (TG)n Simple_repeat Simple_repeat 1 44 0 1803 158 54 6 chrY 5000006 5000341 -19712738 + MLT1A1 LTR MaLR 15 365 0 12382 32 1 1 chrY 5000492 5001969 -19711110 - L1PA3 LINE L1 -1845 4301 2825 3826 32 7 0 chrY 5001966 5002429 -19710650 + L1PA3 LINE L1 4317 4782 -1364 * 6080 22 5 1 chrY 5002429 5003099 -19709980 + L1PA3 LINE L1 5483 6155 0 198 0 0 0 chrY 5004260 5004282 -19708797 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 707 100 158 0 chrY 5005750 5005870 -19707209 - MER85 DNA T2_type 0 139 1 1373 183 0 0 chrY 5006212 5006463 -19706616 - L1MA4 LINE L1 -11 6289 6039 751 260 39 0 chrY 5006783 5006964 -19706115 + L1MB5 LINE L1 5950 6137 -37 2015 206 24 81 chrY 5006970 5007465 -19705614 + MLT1C LTR MaLR 1 467 0 667 285 80 75 chrY 5007529 5007981 -19705098 - L2 LINE L2 -889 2425 1972 327 25 0 0 chrY 5008249 5008289 -19704790 + (GA)n Simple_repeat Simple_repeat 1 40 0 764 240 29 0 chrY 5008315 5008486 -19704593 - MSTD LTR MaLR -218 178 3 2239 87 22 26 chrY 5008660 5008972 -19704107 - AluY SINE Alu 0 311 1 1720 204 38 0 chrY 5009621 5009940 -19703139 - MER2 DNA MER2_type -14 331 1 200 267 13 53 chrY 5010299 5010374 -19702705 - MIR SINE MIR -115 147 76 1463 302 93 24 chrY 5010468 5011018 -19702061 - MLT1E LTR MaLR -2 591 4 221 0 0 33 chrY 5011051 5011081 -19701998 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 832 200 38 5 chrY 5011880 5012065 -19701014 - MER20 DNA MER1_type -26 193 3 369 110 71 24 chrY 5012071 5012198 -19700881 + (TAGA)n Simple_repeat Simple_repeat 2 134 0 493 126 58 27 chrY 5012215 5012581 -19700498 + (TAGA)n Simple_repeat Simple_repeat 1 377 0 497 107 40 27 chrY 5012603 5012752 -19700327 + (TAGA)n Simple_repeat Simple_repeat 1 151 0 894 174 67 0 chrY 5012769 5012947 -19700132 - MER20 DNA MER1_type 0 219 30 1254 214 80 48 chrY 5013566 5013917 -19699162 + MLT1A1 LTR MaLR 1 362 -3 3291 209 20 50 chrY 5014130 5014702 -19698377 + L1MA9 LINE L1 5459 5999 -313 3303 152 17 26 chrY 5014702 5015234 -19697845 - MER1A DNA MER1_type 0 527 1 3291 209 20 50 chrY 5015234 5015509 -19697570 + L1MA9 LINE L1 5999 6281 -31 439 223 58 19 chrY 5015663 5015766 -19697313 + L2 LINE L2 3152 3258 -14 1418 270 15 28 chrY 5016557 5016949 -19696130 + L1MB5 LINE L1 5748 6117 -66 1878 168 0 0 chrY 5016949 5017234 -19695845 - AluSx SINE Alu -21 291 7 1418 270 15 28 chrY 5017234 5017299 -19695780 + L1MB5 LINE L1 6117 6181 -2 2227 109 3 0 chrY 5017310 5017612 -19695467 + AluY SINE Alu 1 303 -8 976 178 11 83 chrY 5017932 5018196 -19694883 - MER66B LTR ERV1 -2 484 240 791 211 206 10 chrY 5018313 5018512 -19694567 - MER66B LTR ERV1 -240 246 9 2045 113 0 10 chrY 5018835 5019126 -19693953 - MER1A DNA MER1_type 0 529 242 237 208 0 0 chrY 5019242 5019295 -19693784 - LTR66 LTR ERVL -164 446 394 233 132 38 19 chrY 5019295 5019348 -19693731 + (TA)n Simple_repeat Simple_repeat 2 55 0 1565 185 0 0 chrY 5020593 5020874 -19692205 - L1 LINE L1 -1136 5010 4730 253 267 27 27 chrY 5020950 5021025 -19692054 - L2 LINE L2 0 3272 3198 2524 27 40 0 chrY 5021700 5021996 -19691083 + AluY SINE Alu 1 308 -3 714 98 40 29 chrY 5023190 5023363 -19689716 + (TAGA)n Simple_repeat Simple_repeat 3 177 0 853 223 30 128 chrY 5023903 5024220 -19688859 - MLT1A2 LTR MaLR -5 370 24 2855 106 3 3 chrY 5024220 5024580 -19688499 - THE1B LTR MaLR -1 363 4 853 223 30 128 chrY 5024580 5024605 -19688474 - MLT1A2 LTR MaLR -351 24 94 2120 144 101 29 chrY 5024605 5024981 -19688098 + MER57A LTR ERV1 1 403 0 853 223 30 128 chrY 5024981 5025063 -19688016 - MLT1A2 LTR MaLR -280 95 7 186 103 0 0 chrY 5025169 5025198 -19687881 + (A)n Simple_repeat Simple_repeat 1 29 0 225 94 0 0 chrY 5025240 5025272 -19687807 + (T)n Simple_repeat Simple_repeat 1 32 0 2430 74 20 0 chrY 5025490 5025787 -19687292 + AluY SINE Alu 1 303 -8 438 75 0 0 chrY 5026373 5026426 -19686653 - Alu SINE Alu -258 53 1 469 251 2 8 chrY 5026426 5026558 -19686521 - L1M4 LINE L1 -1074 5072 4941 481 288 24 0 chrY 5026717 5026887 -19686192 + (TATG)n Simple_repeat Simple_repeat 1 174 0 411 366 6 0 chrY 5026837 5027012 -19686067 + (TG)n Simple_repeat Simple_repeat 1 176 0 * 248 244 12 35 chrY 5027030 5027202 -19685877 + (TATG)n Simple_repeat Simple_repeat 4 171 0 423 305 0 13 chrY 5027214 5027368 -19685711 + (TATG)n Simple_repeat Simple_repeat 4 155 0 2483 135 17 11 chrY 5028066 5028428 -19684651 + THE1B LTR MaLR 1 364 0 200 108 0 27 chrY 5029577 5029614 -19683465 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 728 198 37 119 chrY 5029663 5029832 -19683247 - MLT2B2 LTR ERVL 0 515 370 1962 162 35 54 chrY 5029832 5030202 -19682877 + THE1B LTR MaLR 2 364 0 728 198 37 119 chrY 5030202 5030275 -19682804 - MLT2B2 LTR ERVL -145 370 293 7936 171 12 34 chrY 5030452 5031723 -19681356 + L1P3 LINE L1 2 1253 -5208 210 91 0 0 chrY 5031723 5031756 -19681323 + (CAA)n Simple_repeat Simple_repeat 1 33 0 7936 171 12 34 chrY 5031756 5032883 -19680196 + L1P3 LINE L1 1253 2403 -4058 334 157 0 0 chrY 5032891 5032942 -19680137 - L1MA8 LINE L1 -423 5868 5818 247 83 28 0 chrY 5032964 5033000 -19680079 - MER75 DNA T2_type -4 510 474 587 140 40 0 chrY 5033031 5033131 -19679948 - L1MA8 LINE L1 -496 5816 5713 311 315 18 0 chrY 5033133 5033244 -19679835 - MER5A DNA MER1_type -74 115 3 481 333 0 0 chrY 5033775 5033955 -19679124 + (CA)n Simple_repeat Simple_repeat 1 180 0 360 304 0 4 chrY 5033978 5034459 -19678620 + (CA)n Simple_repeat Simple_repeat 1 478 0 315 274 0 0 chrY 5034509 5034684 -19678395 + (CA)n Simple_repeat Simple_repeat 2 176 0 183 262 0 0 chrY 5034735 5034842 -19678237 + (CA)n Simple_repeat Simple_repeat 2 108 0 236 270 7 0 chrY 5034865 5035002 -19678077 + (CA)n Simple_repeat Simple_repeat 2 139 0 242 269 0 8 chrY 5035030 5035160 -19677919 + (CA)n Simple_repeat Simple_repeat 1 129 0 271 316 7 22 chrY 5035173 5035309 -19677770 + (CATATA)n Simple_repeat Simple_repeat 1 134 0 * 360 295 17 17 chrY 5035212 5035385 -19677694 + (CATA)n Simple_repeat Simple_repeat 4 176 0 222 232 27 0 chrY 5035402 5035514 -19677565 + (CA)n Simple_repeat Simple_repeat 2 116 0 3960 78 26 36 chrY 5038057 5038662 -19674417 + L1PB1 LINE L1 5550 6148 -3 785 181 123 13 chrY 5039120 5039275 -19673804 + AluJo SINE Alu 1 172 -140 1690 111 4 25 chrY 5039277 5039512 -19673567 - AluSq SINE Alu -83 230 1 351 0 0 0 chrY 5039936 5039975 -19673104 + (TG)n Simple_repeat Simple_repeat 1 39 0 2098 193 3 0 chrY 5040031 5040420 -19672659 - MLT1B LTR MaLR 0 390 1 4847 163 8 6 chrY 5040992 5041970 -19671109 + L1PA16 LINE L1 5170 6150 -16 2304 136 5 19 chrY 5042409 5042778 -19670301 - THE1B LTR MaLR 0 364 1 26 50 0 0 chrY 5043085 5043125 -19669954 + AT_rich Low_complexity Low_complexity 1 40 0 3595 121 8 25 chrY 5043589 5043661 -19669418 + L1PA14 LINE L1 5535 5607 -554 1752 171 0 17 chrY 5043661 5043989 -19669090 + AluSx SINE Alu 1 323 0 3595 121 8 25 chrY 5043989 5044521 -19668558 + L1PA14 LINE L1 5607 6130 -31 6205 90 9 0 chrY 5044527 5045394 -19667685 + L1PA6 LINE L1 5280 6154 0 204 270 157 78 chrY 5045494 5045698 -19667381 - MIR SINE MIR -10 252 33 195 42 0 0 chrY 5045739 5045763 -19667316 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 39144 47 23 1 chrY 5045789 5051806 -19661273 - L1PA3 LINE L1 -4 6151 1 1365 232 10 7 chrY 5051826 5052115 -19660964 - AluJb SINE Alu -22 290 1 559 188 72 68 chrY 5052498 5052705 -19660374 + MER3 DNA MER1_type 1 208 -1 2150 176 38 24 chrY 5052857 5053282 -19659797 + Tigger2a DNA MER2_type 1 431 -3 219 376 47 0 chrY 5053445 5053530 -19659549 + L2 LINE L2 3167 3255 -17 1003 120 0 22 chrY 5053547 5053730 -19659349 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 743 261 31 0 chrY 5053781 5053976 -19659103 + MLT2B1 LTR ERVL 1 201 -319 1429 104 0 0 chrY 5053981 5054192 -19658887 - L1P3 LINE L1 -4839 1622 1412 2245 282 42 55 chrY 5054757 5055890 -19657189 + L1M3de LINE L1 286 2051 -4602 1843 152 6 22 chrY 5055927 5056243 -19656836 + AluSx SINE Alu 1 311 -1 1406 270 97 70 chrY 5056284 5057085 -19655994 + L1M2b LINE L1 15 837 -6372 805 259 13 76 chrY 5057057 5057451 -19655628 + L1M2b LINE L1 1564 1932 -5277 * 338 318 148 47 chrY 5057464 5057848 -19655231 - L1MEc LINE L1 -5918 478 56 1322 178 73 11 chrY 5058282 5058557 -19654522 - AluSg SINE Alu -17 293 2 319 56 37 0 chrY 5058559 5058613 -19654466 + (TAAAAA)n Simple_repeat Simple_repeat 2 57 0 2121 89 19 29 chrY 5058616 5058930 -19654149 + AluY SINE Alu 1 311 0 2463 65 7 0 chrY 5058962 5059294 -19653785 - AluY SINE Alu 0 334 1 1410 270 87 11 chrY 5059522 5060144 -19652935 - LTR65 LTR ERV1 0 669 1 1329 228 7 17 chrY 5060730 5061024 -19652055 + AluSx SINE Alu 1 291 -21 22 35 0 0 chrY 5061024 5061053 -19652026 + AT_rich Low_complexity Low_complexity 1 29 0 805 207 0 30 chrY 5061085 5061254 -19651825 - FRAM SINE Alu -6 170 7 288 0 0 0 chrY 5061258 5061290 -19651789 + (TG)n Simple_repeat Simple_repeat 2 33 0 316 334 59 59 chrY 5061344 5061700 -19651379 - HAL1b LINE L1 -689 659 304 334 268 12 0 chrY 5061862 5061944 -19651135 + L2 LINE L2 3231 3313 0 2217 108 0 25 chrY 5064290 5064606 -19648473 + AluY SINE Alu 1 308 -3 185 348 51 44 chrY 5065187 5065345 -19647734 + MIR SINE MIR 48 206 -56 398 321 0 0 chrY 5065424 5065564 -19647515 - MIR SINE MIR -25 237 98 1032 254 13 30 chrY 5066457 5066756 -19646323 - MLT1E LTR MaLR -2 591 298 1459 221 3 24 chrY 5066931 5067225 -19645854 + AluJo SINE Alu 1 288 -24 243 326 68 14 chrY 5067247 5067394 -19645685 - L2 LINE L2 -2521 793 639 347 359 33 22 chrY 5067448 5067632 -19645447 - L2 LINE L2 -2835 479 294 341 141 49 82 chrY 5067848 5068032 -19645047 + (TATATG)n Simple_repeat Simple_repeat 2 179 0 366 153 38 77 chrY 5068049 5068232 -19644847 + (TATATG)n Simple_repeat Simple_repeat 2 177 0 366 153 38 77 chrY 5068249 5068432 -19644647 + (TATATG)n Simple_repeat Simple_repeat 2 177 0 405 172 39 61 chrY 5068449 5068629 -19644450 + (TATATG)n Simple_repeat Simple_repeat 2 177 0 575 294 34 21 chrY 5068640 5068878 -19644201 - MLT1E LTR MaLR -192 275 35 207 0 0 0 chrY 5068879 5068902 -19644177 + (T)n Simple_repeat Simple_repeat 1 23 0 2119 99 0 3 chrY 5069637 5069941 -19643138 - AluY SINE Alu -8 303 1 27 29 0 0 chrY 5070127 5070161 -19642918 + AT_rich Low_complexity Low_complexity 1 34 0 233 225 28 70 chrY 5070691 5070762 -19642317 + MIR3 SINE MIR 103 170 -38 2080 103 6 44 chrY 5070871 5071191 -19641888 + AluY SINE Alu 3 310 -1 25 0 0 0 chrY 5071509 5071534 -19641545 + AT_rich Low_complexity Low_complexity 1 25 0 22 35 0 0 chrY 5071746 5071775 -19641304 + AT_rich Low_complexity Low_complexity 1 29 0 1280 183 17 101 chrY 5072364 5072769 -19640310 + MLT1B LTR MaLR 1 371 -19 263 360 30 0 chrY 5073558 5073658 -19639421 + MIR SINE MIR 30 132 -130 439 273 30 8 chrY 5073821 5073953 -19639126 - MIR3 SINE MIR -8 200 66 1852 156 17 3 chrY 5075004 5075306 -19637773 - AluSp SINE Alu -7 306 1 313 353 90 64 chrY 5075692 5076159 -19636920 + L2 LINE L2 2831 3309 -4 1269 153 9 0 chrY 5076267 5076483 -19636596 - LTR19B LTR ERV1 0 580 363 3056 113 17 4 chrY 5076490 5076970 -19636109 - LTR15 LTR ERV1 -7 486 1 1952 147 34 0 chrY 5076970 5077324 -19635755 - LTR19B LTR ERV1 -214 366 1 1258 147 4 31 chrY 5077325 5077550 -19635529 - LTR19B-int LTR ERV1 -1 5585 5367 * 1420 186 66 77 chrY 5077546 5077787 -19635292 - LTR19B-int LTR ERV1 -332 5254 5012 464 48 0 0 chrY 5077787 5077850 -19635229 + AluY SINE Alu 242 304 -5 1420 186 66 77 chrY 5077850 5078089 -19634990 - LTR19B-int LTR ERV1 -574 5012 4718 * 5057 210 37 1 chrY 5078084 5079330 -19633749 - LTR19B-int LTR ERV1 -422 5507 3336 455 242 46 36 chrY 5079359 5079578 -19633501 - LTR19B-int LTR ERV1 -3091 2126 1906 1127 109 0 0 chrY 5079580 5079736 -19633343 + AluY SINE Alu 146 301 -10 4545 148 29 18 chrY 5080166 5080991 -19632088 - LTR19B-int LTR ERV1 -3624 1962 1129 3981 163 8 34 chrY 5080977 5081856 -19631223 - LTR19B-int LTR ERV1 -6786 933 1 * 1644 137 14 11 chrY 5081856 5082140 -19630939 - LTR19B LTR ERV1 0 580 296 2220 99 12 0 chrY 5082141 5082485 -19630594 - THE1-int LTR MaLR -1232 348 1 39 68 0 0 chrY 5082788 5082862 -19630217 + AT_rich Low_complexity Low_complexity 1 74 0 677 311 33 36 chrY 5083193 5083498 -19629581 - MLT1J LTR MaLR -105 406 103 2045 140 0 0 chrY 5085146 5085439 -19627640 + AluSp SINE Alu 1 293 -20 382 250 29 0 chrY 5086915 5087051 -19626028 - L1M4 LINE L1 -1539 4607 4468 10137 130 28 6 chrY 5087643 5090151 -19622928 - L1PA7 LINE L1 -8 6146 3596 1818 186 0 3 chrY 5090151 5090463 -19622616 - AluSx SINE Alu -1 311 1 1057 106 0 0 chrY 5090644 5090786 -19622293 + AluY SINE Alu 163 304 -7 1239 166 16 93 chrY 5090887 5091200 -19621879 + MER52C LTR ERV1 990 1278 0 36 53 0 0 chrY 5091367 5091424 -19621655 + AT_rich Low_complexity Low_complexity 1 57 0 214 331 91 0 chrY 5092023 5092144 -19620935 - MIR SINE MIR -78 184 53 207 0 0 0 chrY 5092381 5092404 -19620675 + (T)n Simple_repeat Simple_repeat 1 23 0 417 321 95 34 chrY 5092543 5092839 -19620240 + L2 LINE L2 2418 2731 -583 578 232 7 21 chrY 5093098 5093240 -19619839 - MLT1D LTR MaLR -65 440 301 299 234 0 27 chrY 5093356 5093467 -19619612 - L1ME LINE L1 -5282 788 681 2906 187 25 3 chrY 5093865 5094433 -19618646 - LTR22 LTR ERVK 0 580 1 7525 184 9 6 chrY 5094434 5096395 -19616684 - HERVK22 LTR ERVK -2 6835 4770 4168 127 15 128 chrY 5096395 5097322 -19615757 - LTR12 LTR ERV1 0 826 5 2487 182 15 26 chrY 5097337 5097948 -19615131 - pTR5 LTR ERV1 -1093 1345 742 * 12188 166 2 15 chrY 5097947 5100502 -19612577 - HERVK22 LTR ERVK -2064 4773 2267 1796 183 30 158 chrY 5100502 5101142 -19611937 + LTR6A LTR ERV1 1 564 0 12840 163 3 7 chrY 5101142 5103377 -19609702 - HERVK22 LTR ERVK -4566 2271 46 3048 109 15 0 chrY 5103377 5104190 -19608889 - L1P2 LINE L1 -420 5734 4909 2878 155 29 39 chrY 5104787 5105349 -19607730 - LTR6A LTR ERV1 0 564 9 195 42 0 0 chrY 5105918 5105942 -19607137 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 2622 150 62 6 chrY 5107367 5107834 -19605245 - MER1A DNA MER1_type -6 523 31 2015 59 0 0 chrY 5108258 5108514 -19604565 + L1PA4 LINE L1 5899 6154 -1 22 56 0 0 chrY 5108726 5108762 -19604317 + AT_rich Low_complexity Low_complexity 1 36 0 465 204 0 0 chrY 5109449 5109581 -19603498 + CT-rich Low_complexity Low_complexity 1 132 0 207 364 8 8 chrY 5109995 5110116 -19602963 + (TTG)n Simple_repeat Simple_repeat 2 122 0 369 0 0 0 chrY 5110976 5111017 -19602062 + (CA)n Simple_repeat Simple_repeat 2 42 0 45 75 0 0 chrY 5111028 5111122 -19601957 + AT_rich Low_complexity Low_complexity 1 94 0 22 35 0 0 chrY 5111361 5111390 -19601689 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chrY 5111475 5111498 -19601581 + AT_rich Low_complexity Low_complexity 1 23 0 1572 197 11 3 chrY 5111498 5111782 -19601297 - AluSx SINE Alu -25 287 2 21 36 0 0 chrY 5112008 5112036 -19601043 + AT_rich Low_complexity Low_complexity 1 28 0 2000 137 13 3 chrY 5112423 5112722 -19600357 + AluY SINE Alu 10 311 0 543 69 0 0 chrY 5115474 5115546 -19597533 + (TTCC)n Simple_repeat Simple_repeat 3 74 0 369 180 0 22 chrY 5116854 5116943 -19596136 + L1MA9 LINE L1 6079 6165 -147 25 0 0 0 chrY 5117106 5117131 -19595948 + AT_rich Low_complexity Low_complexity 1 25 0 898 77 8 0 chrY 5117773 5117890 -19595189 + AluSc SINE Alu 1 118 -191 213 39 0 0 chrY 5119171 5119197 -19593882 + (TTG)n Simple_repeat Simple_repeat 2 27 0 213 311 27 27 chrY 5119292 5119366 -19593713 - MER5A DNA MER1_type -73 116 43 299 308 16 16 chrY 5119790 5119972 -19593107 + L1M4 LINE L1 5336 5517 -657 29 0 0 0 chrY 5120090 5120119 -19592960 + AT_rich Low_complexity Low_complexity 1 29 0 27 29 0 0 chrY 5120240 5120274 -19592805 + AT_rich Low_complexity Low_complexity 1 34 0 27 29 0 0 chrY 5120355 5120389 -19592690 + AT_rich Low_complexity Low_complexity 1 34 0 201 74 0 0 chrY 5121291 5121318 -19591761 + (A)n Simple_repeat Simple_repeat 1 27 0 32 0 0 0 chrY 5122025 5122057 -19591022 + AT_rich Low_complexity Low_complexity 1 32 0 3405 181 42 20 chrY 5122561 5123352 -19589727 + L1PA16 LINE L1 5357 6164 -2 36 62 0 0 chrY 5123352 5123416 -19589663 + AT_rich Low_complexity Low_complexity 1 64 0 21 0 0 0 chrY 5124355 5124376 -19588703 + AT_rich Low_complexity Low_complexity 1 21 0 602 227 0 0 chrY 5125490 5125609 -19587470 + MER41E LTR ERV1 1 119 -393 2201 178 46 75 chrY 5126001 5126734 -19586345 - LTR1 LTR ERV1 -104 684 1 859 226 139 32 chrY 5127934 5128186 -19584893 - AluJo SINE Alu -23 289 11 22 56 0 0 chrY 5129923 5129959 -19583120 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chrY 5130115 5130138 -19582941 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chrY 5130860 5130883 -19582196 + AT_rich Low_complexity Low_complexity 1 23 0 2260 83 13 0 chrY 5131644 5131957 -19581122 - L1PA6 LINE L1 -1 6153 5837 726 70 10 0 chrY 5131957 5132057 -19581022 + L1P3 LINE L1 5432 5532 -622 2251 102 0 7 chrY 5136589 5136884 -19576195 - AluY SINE Alu -16 295 3 283 294 56 24 chrY 5137533 5137659 -19575420 + MLT1F LTR MaLR 386 515 -27 1285 238 3 0 chrY 5138122 5138424 -19574655 + AluSx SINE Alu 1 303 -9 1317 194 0 61 chrY 5138484 5138778 -19574301 + AluSx SINE Alu 13 288 -24 250 276 31 10 chrY 5138785 5138883 -19574196 + GA-rich Low_complexity Low_complexity 3 102 0 414 69 0 0 chrY 5138885 5138943 -19574136 + (GGAA)n Simple_repeat Simple_repeat 1 58 0 513 0 0 0 chrY 5139401 5139458 -19573621 + (TA)n Simple_repeat Simple_repeat 1 57 0 402 229 7 118 chrY 5139626 5139770 -19573309 - FLAM_C SINE Alu -5 128 1 290 289 13 0 chrY 5139912 5139988 -19573091 + MLT1E LTR MaLR 385 461 -132 201 74 0 0 chrY 5140046 5140073 -19573006 + (TG)n Simple_repeat Simple_repeat 2 28 0 272 163 20 0 chrY 5140088 5140137 -19572942 + L1MC/D LINE L1 5760 5809 -1999 679 344 59 19 chrY 5141085 5141506 -19571573 - L1M3b LINE L1 -5771 510 73 321 47 0 0 chrY 5141507 5141550 -19571529 + (T)n Simple_repeat Simple_repeat 1 43 0 1682 169 0 49 chrY 5141642 5141950 -19571129 + AluSg SINE Alu 1 293 -17 261 294 18 37 chrY 5142035 5142144 -19570935 - L1M3de LINE L1 -5898 755 649 1563 219 35 56 chrY 5142151 5142581 -19570498 - MSTB LTR MaLR -5 421 1 2734 7 0 0 chrY 5142907 5143195 -19569884 + AluYa5 SINE Alu 22 309 -2 2760 10 0 0 chrY 5143195 5143490 -19569589 + AluYa5 SINE Alu 15 309 -2 2049 147 0 7 chrY 5143495 5143801 -19569278 + AluSx SINE Alu 1 304 -8 279 366 21 24 chrY 5143830 5144085 -19568994 - L1M3de LINE L1 -5217 1436 605 608 255 34 39 chrY 5144430 5144602 -19568477 + L1MA4 LINE L1 5999 6171 -129 1242 223 3 42 chrY 5144602 5144912 -19568167 + AluJo SINE Alu 2 299 -13 608 255 34 39 chrY 5144912 5144947 -19568132 + L1MA4 LINE L1 6171 6205 -95 1443 222 3 14 chrY 5144978 5145266 -19567813 - AluSx SINE Alu -25 287 3 1511 196 28 3 chrY 5145748 5146033 -19567046 + AluSg SINE Alu 1 292 -18 327 233 53 15 chrY 5147980 5148113 -19564966 + L1M4 LINE L1 5308 5445 -733 1435 161 9 52 chrY 5148113 5148548 -19564531 + pTR5 LTR ERV1 743 1211 -1227 260 279 0 0 chrY 5148548 5148627 -19564452 + C-rich Low_complexity Low_complexity 1 79 0 314 43 43 0 chrY 5148628 5148675 -19564404 + pTR5 LTR ERV1 224 272 -2166 1330 153 18 0 chrY 5148675 5148903 -19564176 + AluSc SINE Alu 61 292 -17 1832 148 13 10 chrY 5149400 5149698 -19563381 - AluSc SINE Alu -10 299 1 258 255 32 0 chrY 5150968 5151062 -19562017 + (TA)n Simple_repeat Simple_repeat 1 97 0 821 237 0 25 chrY 5151589 5151825 -19561254 - AluJb SINE Alu -81 231 2 316 159 0 72 chrY 5151975 5152044 -19561035 + MER1B DNA MER1_type 213 276 -63 339 193 0 60 chrY 5152173 5152256 -19560823 + MER1B DNA MER1_type 243 320 -13 470 242 0 0 chrY 5152277 5152376 -19560703 - AluJ/FLAM SINE Alu -211 101 3 2831 243 61 48 chrY 5156913 5158651 -19554428 + L1MA8 LINE L1 4541 6291 0 31 0 0 0 chrY 5158784 5158815 -19554264 + AT_rich Low_complexity Low_complexity 1 31 0 916 224 27 54 chrY 5158962 5159256 -19553823 + AluJb SINE Alu 13 298 -14 229 294 44 38 chrY 5159303 5159463 -19553616 + L1M4c LINE L1 1203 1363 -5021 249 271 24 24 chrY 5160207 5160292 -19552787 + GA-rich Low_complexity Low_complexity 3 87 0 258 250 13 0 chrY 5160386 5160462 -19552617 + (CAGAGA)n Simple_repeat Simple_repeat 4 80 0 405 0 0 0 chrY 5161911 5161956 -19551123 + (CA)n Simple_repeat Simple_repeat 2 46 0 215 290 0 0 chrY 5164445 5164538 -19548541 + CT-rich Low_complexity Low_complexity 1 93 0 1542 220 0 0 chrY 5169069 5169408 -19543671 - AluSx SINE Alu 0 339 1 2080 135 3 0 chrY 5171151 5171440 -19541639 - AluSx SINE Alu -22 290 1 1174 254 7 0 chrY 5171444 5171723 -19541356 - AluJo SINE Alu -22 290 10 25 51 0 0 chrY 5173918 5173957 -19539122 + AT_rich Low_complexity Low_complexity 1 39 0 210 344 0 0 chrY 5174268 5174332 -19538747 + CT-rich Low_complexity Low_complexity 6 69 0 225 0 0 0 chrY 5174878 5174903 -19538176 + (T)n Simple_repeat Simple_repeat 1 25 0 2079 76 32 44 chrY 5174941 5175256 -19537823 + AluY SINE Alu 1 311 0 844 221 106 14 chrY 5175808 5176016 -19537063 + AluJb SINE Alu 56 282 -30 255 79 0 0 chrY 5176041 5176079 -19537000 + (CA)n Simple_repeat Simple_repeat 1 38 0 191 122 0 24 chrY 5176608 5176649 -19536430 + (TA)n Simple_repeat Simple_repeat 2 41 0 827 231 27 27 chrY 5178798 5178984 -19534095 - MER5A DNA MER1_type -2 187 2 2003 134 3 37 chrY 5179976 5180297 -19532782 + AluSx SINE Alu 1 310 -2 41635 64 3 14 chrY 5180317 5186433 -19526646 - L1PA4 LINE L1 -109 6046 2 5453 158 19 16 chrY 5186503 5187470 -19525609 + LTR5 LTR ERVK 1 969 0 479 305 35 0 chrY 5187642 5187783 -19525296 + MIR SINE MIR 83 228 -34 1999 151 3 3 chrY 5188949 5189261 -19523818 + AluSx SINE Alu 1 312 0 209 235 185 0 chrY 5189451 5189532 -19523547 + MIR3 SINE MIR 110 205 -3 1609 197 24 102 chrY 5189551 5189972 -19523107 + MLT1B LTR MaLR 3 390 0 1453 197 31 3 chrY 5190415 5190705 -19522374 - AluJo SINE Alu -9 303 6 663 302 123 28 chrY 5190715 5191284 -19521795 + L1ME4a LINE L1 5445 6067 -54 327 271 88 47 chrY 5191371 5191541 -19521538 + L3 LINE CR1 1304 1480 -97 428 264 227 40 chrY 5191557 5191936 -19521143 - L2 LINE L2 -17 3296 2847 369 258 118 42 chrY 5191987 5192283 -19520796 + MLT1H LTR MaLR 138 536 -13 325 242 61 30 chrY 5194884 5194983 -19518096 - L2 LINE L2 -11 3261 3160 232 250 40 13 chrY 5195268 5195344 -19517735 + L1ME3A LINE L1 5922 5999 -171 699 240 89 13 chrY 5195414 5195639 -19517440 + L1ME3A LINE L1 5920 6161 -9 1077 191 0 28 chrY 5195665 5195880 -19517199 - MER3 DNA MER1_type 0 209 1 256 250 8 100 chrY 5198294 5198414 -19514665 + MER113 DNA MER1_type? 99 207 -314 699 266 48 24 chrY 5198998 5199250 -19513829 - LTR16C LTR ERVL -8 483 226 312 295 21 11 chrY 5202288 5202383 -19510696 + MIR SINE MIR 127 222 -40 298 242 137 40 chrY 5203075 5203199 -19509880 - MIR SINE MIR -21 241 106 233 252 118 50 chrY 5204104 5204223 -19508856 + MIR SINE MIR 16 142 -66 243 23 68 0 chrY 5205197 5205241 -19507838 + T-rich Low_complexity Low_complexity 2 48 0 468 280 119 45 chrY 5206307 5206550 -19506529 - MIR SINE MIR 0 262 2 298 354 78 10 chrY 5207120 5207312 -19505767 + MIR SINE MIR 6 210 -52 1093 175 16 0 chrY 5207572 5207755 -19505324 + MER5A DNA MER1_type 1 186 -3 488 248 88 0 chrY 5207764 5207877 -19505202 + L2 LINE L2 3191 3313 0 190 211 53 0 chrY 5207902 5207940 -19505139 + L2 LINE L2 3180 3219 -94 239 320 8 86 chrY 5208618 5208746 -19504333 - L2 LINE L2 -258 3014 2897 457 239 18 0 chrY 5209131 5209240 -19503839 - L1ME LINE L1 -454 5667 5557 205 299 72 31 chrY 5209518 5209615 -19503464 + L2 LINE L2 2178 2278 -1036 25 51 0 0 chrY 5210014 5210053 -19503026 + AT_rich Low_complexity Low_complexity 1 39 0 39 0 0 0 chrY 5210102 5210141 -19502938 + AT_rich Low_complexity Low_complexity 1 39 0 2219 143 74 20 chrY 5210483 5210875 -19502204 + MLT2C2 LTR ERVL 8 420 -44 993 144 144 6 chrY 5211269 5211449 -19501630 - MER3 DNA MER1_type 0 209 5 319 321 20 2 chrY 5212007 5212132 -19500947 + MIR SINE MIR 30 154 -62 316 320 48 0 chrY 5212135 5212238 -19500841 - L2 LINE L2 0 3313 3206 243 302 42 98 chrY 5212979 5213194 -19499885 - MLT1K LTR MaLR -182 406 204 1024 250 21 8 chrY 5214274 5214514 -19498565 - MIR SINE MIR -13 249 7 318 239 15 0 chrY 5214926 5214993 -19498086 + MER94 DNA DNA 64 131 -3 531 90 0 0 chrY 5215544 5215622 -19497457 + (TC)n Simple_repeat Simple_repeat 1 78 0 192 152 0 0 chrY 5215665 5215698 -19497381 + A-rich Low_complexity Low_complexity 1 33 0 237 328 138 36 chrY 5215913 5216276 -19496803 + L2 LINE L2 2578 2977 -337 480 341 8 0 chrY 5216295 5216427 -19496652 + L2 LINE L2 3181 3313 0 188 255 39 20 chrY 5216565 5216616 -19496463 - MIR3 SINE MIR -46 162 111 213 39 0 0 chrY 5216863 5216889 -19496190 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 1188 245 75 13 chrY 5217768 5218271 -19494808 + MLT1G1 LTR MaLR 1 589 -6 297 0 0 0 chrY 5218765 5218798 -19494281 + (CA)n Simple_repeat Simple_repeat 2 34 0 21 36 0 0 chrY 5219259 5219287 -19493792 + AT_rich Low_complexity Low_complexity 1 28 0 285 357 7 56 chrY 5219764 5219907 -19493172 - MIR3 SINE MIR -2 206 71 226 231 22 0 chrY 5220495 5220586 -19492493 + (TA)n Simple_repeat Simple_repeat 2 94 0 279 0 0 0 chrY 5220958 5220989 -19492090 + (A)n Simple_repeat Simple_repeat 1 31 0 2172 120 0 0 chrY 5220999 5221300 -19491779 + AluY SINE Alu 2 302 -9 215 287 140 15 chrY 5221412 5221548 -19491531 - L2 LINE L2 -193 3120 2968 1344 206 10 40 chrY 5222011 5222312 -19490767 + AluJo SINE Alu 1 292 -20 941 220 173 34 chrY 5222319 5222642 -19490437 + L1ME3A LINE L1 5796 6163 -7 21 0 0 0 chrY 5223002 5223023 -19490056 + AT_rich Low_complexity Low_complexity 1 21 0 376 169 31 15 chrY 5223295 5223360 -19489719 + Charlie5 DNA MER1_type 2 67 -2545 1993 129 4 0 chrY 5224687 5224965 -19488114 - AluSq SINE Alu -27 286 8 459 35 0 0 chrY 5225190 5225247 -19487832 + (TC)n Simple_repeat Simple_repeat 1 57 0 24 0 0 0 chrY 5225479 5225503 -19487576 + AT_rich Low_complexity Low_complexity 1 24 0 280 237 0 0 chrY 5225509 5225568 -19487511 + L1MC/D LINE L1 5548 5606 -2202 186 320 27 13 chrY 5225983 5226058 -19487021 - MIR3 SINE MIR -130 78 3 184 119 48 48 chrY 5227511 5227553 -19485526 + L3b LINE CR1 1400 1441 -142 1779 248 120 26 chrY 5227600 5228077 -19485002 + MLT1E LTR MaLR 1 536 -57 1545 68 0 5 chrY 5228077 5228268 -19484811 - L1PA4 LINE L1 -6 6149 5960 1779 248 120 26 chrY 5228268 5228331 -19484748 + MLT1E LTR MaLR 536 592 -1 4350 80 14 16 chrY 5228332 5229367 -19483712 + MER11A LTR ERVK 1 1266 0 370 236 39 99 chrY 5230113 5230295 -19482784 + MIR SINE MIR 79 249 -13 1695 264 90 104 chrY 5230376 5230621 -19482458 - L2 LINE L2 0 3313 3066 2024 159 3 0 chrY 5230621 5230930 -19482149 + AluSx SINE Alu 3 312 0 1695 264 90 104 chrY 5230930 5232078 -19481001 - L2 LINE L2 -247 3066 1969 1278 203 8 8 chrY 5232658 5232914 -19480165 + L1MD3 LINE L1 7717 7972 -23 751 122 0 104 chrY 5233169 5233304 -19479775 - L1MB4 LINE L1 0 6180 6063 1556 207 0 10 chrY 5233304 5233608 -19479471 - AluJo SINE Alu -11 301 1 751 122 0 104 chrY 5233608 5233636 -19479443 - L1MB4 LINE L1 -117 6063 6034 346 287 185 30 chrY 5234141 5234476 -19478603 - Charlie8 DNA MER1_type -1920 497 111 1833 170 21 0 chrY 5234787 5235076 -19478003 - AluJb SINE Alu -17 295 1 6867 194 14 25 chrY 5236739 5238129 -19474950 + L1P LINE L1 12 1387 -4759 10898 94 22 0 chrY 5238126 5240484 -19472595 + L1PA6 LINE L1 3763 6152 -2 702 250 40 0 chrY 5241441 5241617 -19471462 + MER3 DNA MER1_type 27 209 0 584 174 157 6 chrY 5241626 5241780 -19471299 - MER5A DNA MER1_type -5 184 4 699 265 50 66 chrY 5242003 5242384 -19470695 - Charlie7 DNA MER1_type -1919 693 319 2037 135 0 3 chrY 5242861 5243150 -19469929 + AluSc SINE Alu 6 293 -16 240 217 43 22 chrY 5243172 5243264 -19469815 + L1 LINE L1 4737 4830 -1316 861 207 69 20 chrY 5243419 5243622 -19469457 + MER20 DNA MER1_type 5 217 -2 214 233 58 126 chrY 5243696 5243799 -19469280 + MIR SINE MIR 56 151 -111 184 357 0 0 chrY 5244006 5244048 -19469031 + L2 LINE L2 3154 3195 -77 1413 208 0 64 chrY 5247964 5248318 -19464761 - AluJo SINE Alu 0 312 1 347 252 38 63 chrY 5248834 5248993 -19464086 - MIR3 SINE MIR -43 165 11 440 253 175 0 chrY 5249096 5249250 -19463829 + MER5A DNA MER1_type 9 189 0 541 304 132 9 chrY 5249662 5249882 -19463197 + MIR SINE MIR 16 262 0 1595 170 76 3 chrY 5250001 5250290 -19462789 + AluJb SINE Alu 1 310 -2 701 190 0 0 chrY 5250301 5250422 -19462657 + FLAM_C SINE Alu 3 123 -20 375 60 0 0 chrY 5250422 5250472 -19462607 + (GA)n Simple_repeat Simple_repeat 1 50 0 918 73 0 0 chrY 5250632 5250755 -19462324 + (GGGAA)n Simple_repeat Simple_repeat 3 125 0 1276 174 45 87 chrY 5252077 5252321 -19460758 + AluJb SINE Alu 1 231 -81 2291 75 7 10 chrY 5252321 5252626 -19460453 - AluY SINE Alu -7 304 1 1276 174 45 87 chrY 5252626 5252691 -19460388 + AluJb SINE Alu 231 297 -15 231 114 0 0 chrY 5252762 5252797 -19460282 + (A)n Simple_repeat Simple_repeat 1 35 0 239 211 111 0 chrY 5253130 5253220 -19459859 - L1MC4a LINE L1 -1635 6173 6074 1680 159 3 26 chrY 5253423 5253725 -19459354 + AluSq SINE Alu 9 303 -10 334 259 239 24 chrY 5253736 5253941 -19459138 - L1MC4a LINE L1 -1946 5862 5614 586 40 0 0 chrY 5253949 5254025 -19459054 + L1MA2 LINE L1 6229 6304 0 269 106 0 21 chrY 5254053 5254100 -19458979 + (TA)n Simple_repeat Simple_repeat 2 47 0 375 264 106 45 chrY 5254226 5254489 -19458590 - L1MC4a LINE L1 -787 5359 5174 658 147 10 0 chrY 5254497 5254599 -19458480 - AluSg/x SINE Alu -17 293 191 280 293 112 29 chrY 5255347 5255552 -19457527 + L1MC/D LINE L1 5484 5705 -416 230 259 18 27 chrY 5255634 5255746 -19457333 + L1MC/D LINE L1 5816 5926 -1882 23 0 0 0 chrY 5255768 5255791 -19457288 + AT_rich Low_complexity Low_complexity 1 23 0 1450 189 0 12 chrY 5256024 5256283 -19456796 - AluJo SINE Alu -13 299 44 2066 107 3 14 chrY 5256291 5256580 -19456499 - AluSc SINE Alu -11 298 13 2564 132 30 0 chrY 5257143 5257598 -19455481 + MER1A DNA MER1_type 1 529 0 356 172 134 112 chrY 5257635 5257675 -19455404 + MER5A DNA MER1_type 39 77 -112 1996 154 0 3 chrY 5257675 5257974 -19455105 + AluSg SINE Alu 3 300 -10 356 172 134 112 chrY 5257974 5258067 -19455012 + MER5A DNA MER1_type 77 175 -14 602 219 11 27 chrY 5258225 5258408 -19454671 + MER96B DNA MER1_type? 1 180 -237 1505 167 0 15 chrY 5258408 5258672 -19454407 + AluJb SINE Alu 1 260 -52 394 152 89 0 chrY 5258703 5258782 -19454297 + MER96B DNA MER1_type? 168 253 -164 1740 178 0 3 chrY 5259318 5259610 -19453469 + AluJb SINE Alu 1 291 -21 317 235 17 92 chrY 5259671 5259790 -19453289 + MIR SINE MIR 119 228 -34 234 322 79 38 chrY 5260395 5260484 -19452595 + MIR SINE MIR 71 164 -44 1079 176 0 0 chrY 5261282 5261447 -19451632 - AluSg/x SINE Alu -76 236 72 330 257 122 51 chrY 5261598 5261812 -19451267 - MER102a DNA MER1_type -25 305 77 200 238 0 0 chrY 5262335 5262377 -19450702 + A-rich Low_complexity Low_complexity 1 42 0 1152 154 5 32 chrY 5263209 5263430 -19449649 - L1MB5 LINE L1 0 6174 5960 4577 170 12 31 chrY 5263473 5264492 -19448587 - L1MA9 LINE L1 -39 6273 5275 246 62 0 0 chrY 5264777 5264809 -19448270 + (CA)n Simple_repeat Simple_repeat 2 33 0 4084 181 7 3 chrY 5265415 5266166 -19446913 + MER6 DNA MER2_type 111 864 -1 233 207 9 153 chrY 5266943 5267054 -19446025 + MER5A DNA MER1_type 11 105 -84 268 291 68 17 chrY 5267424 5267541 -19445538 + L2 LINE L2 3191 3313 0 513 174 0 33 chrY 5269193 5269314 -19443765 - Charlie1 DNA MER1_type -25 2736 2620 * 740 170 216 10 chrY 5269302 5269496 -19443583 - Charlie1 DNA MER1_type -2527 234 1 478 267 186 5 chrY 5269865 5270086 -19442993 + MIR SINE MIR 2 262 0 26 30 0 0 chrY 5270198 5270231 -19442848 + AT_rich Low_complexity Low_complexity 1 33 0 1108 173 21 158 chrY 5270376 5270799 -19442280 + MLT1A1 LTR MaLR 1 365 0 357 232 14 0 chrY 5270800 5270869 -19442210 - L2 LINE L2 -17 3255 3186 473 115 42 0 chrY 5271546 5271642 -19441437 + CT-rich Low_complexity Low_complexity 2 101 0 1501 230 17 0 chrY 5271642 5271810 -19441269 - AluJb SINE Alu -7 305 128 185 0 40 0 chrY 5271810 5271835 -19441244 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1501 230 17 0 chrY 5271835 5271966 -19441113 - AluJb SINE Alu -184 128 1 814 217 13 0 chrY 5272177 5272334 -19440745 + FRAM SINE Alu 1 151 -25 23 33 0 0 chrY 5272381 5272411 -19440668 + AT_rich Low_complexity Low_complexity 1 30 0 180 0 0 0 chrY 5273303 5273323 -19439756 + (TA)n Simple_repeat Simple_repeat 2 21 0 * 327 49 0 0 chrY 5273322 5273363 -19439716 + (TG)n Simple_repeat Simple_repeat 2 42 0 25 0 0 0 chrY 5274001 5274026 -19439053 + AT_rich Low_complexity Low_complexity 1 25 0 22 70 0 0 chrY 5274131 5274174 -19438905 + AT_rich Low_complexity Low_complexity 1 43 0 722 279 14 9 chrY 5274807 5275029 -19438050 + MIR SINE MIR 10 232 -30 1102 237 108 46 chrY 5275089 5275545 -19437534 + MLT1D LTR MaLR 22 505 0 449 258 83 59 chrY 5275890 5276436 -19436643 - L1MEd LINE L1 -4862 1343 853 2121 132 0 3 chrY 5277314 5277609 -19435470 + AluY SINE Alu 1 294 -17 1070 185 9 36 chrY 5277656 5277878 -19435201 + MER58A DNA MER1_type 9 224 0 387 41 0 0 chrY 5278418 5278467 -19434612 + (CA)n Simple_repeat Simple_repeat 2 50 0 627 294 11 13 chrY 5278942 5279628 -19433451 + BSR/Beta Satellite Satellite 1 684 0 867 290 31 7 chrY 5279715 5280001 -19433078 + BSR/Beta Satellite Satellite 18 310 -69 540 259 18 23 chrY 5280066 5280323 -19432756 + BSR/Beta Satellite Satellite 1 255 -15 498 276 22 36 chrY 5280596 5281224 -19431855 + BSR/Beta Satellite Satellite 1 619 -21 235 329 20 47 chrY 5281379 5281528 -19431551 + BSR/Beta Satellite Satellite 2 146 -6 1278 274 29 9 chrY 5281615 5282387 -19430692 + BSR/Beta Satellite Satellite 1 787 -7 645 285 15 12 chrY 5282493 5282827 -19430252 + BSR/Beta Satellite Satellite 1 335 -47 463 219 0 5 chrY 5282839 5282960 -19430119 + BSR/Beta Satellite Satellite 1 120 -47 568 260 15 53 chrY 5283011 5283738 -19429341 + BSR/Beta Satellite Satellite 1 698 0 849 301 19 12 chrY 5283768 5284093 -19428986 + BSR/Beta Satellite Satellite 35 361 -18 810 281 22 15 chrY 5284115 5285657 -19427422 + BSR/Beta Satellite Satellite 1 1554 -35 878 283 21 34 chrY 5285700 5287195 -19425884 + BSR/Beta Satellite Satellite 1 1476 -38 313 342 29 0 chrY 5287337 5287500 -19425579 + BSR/Beta Satellite Satellite 1 167 -17 1125 285 26 0 chrY 5287605 5288027 -19425052 + BSR/Beta Satellite Satellite 1 432 -2 549 262 7 17 chrY 5288087 5288391 -19424688 + BSR/Beta Satellite Satellite 1 300 -7 783 313 8 11 chrY 5288498 5288763 -19424316 + BSR/Beta Satellite Satellite 35 298 -81 2130 117 0 20 chrY 5288763 5289063 -19424016 + AluY SINE Alu 1 294 -17 973 264 26 31 chrY 5289094 5290707 -19422372 + BSR/Beta Satellite Satellite 1 1604 0 1155 274 27 27 chrY 5290790 5291489 -19421590 + BSR/Beta Satellite Satellite 1 699 -5 645 277 14 30 chrY 5291609 5292306 -19420773 + BSR/Beta Satellite Satellite 1 685 -17 270 305 67 29 chrY 5292459 5292564 -19420515 + BSR/Beta Satellite Satellite 40 148 -4 1210 311 17 0 chrY 5292699 5293121 -19419958 + BSR/Beta Satellite Satellite 1 429 0 255 315 0 69 chrY 5293135 5293265 -19419814 + BSR/Beta Satellite Satellite 15 135 -7 * 1286 289 17 23 chrY 5293169 5294926 -19418153 + BSR/Beta Satellite Satellite 1 1746 -30 598 267 15 15 chrY 5294961 5295317 -19417762 + BSR/Beta Satellite Satellite 1 356 -5 1113 257 27 21 chrY 5295346 5295677 -19417402 + BSR/Beta Satellite Satellite 29 361 -18 903 316 41 11 chrY 5295699 5296152 -19416927 + BSR/Beta Satellite Satellite 1 466 -52 502 269 18 17 chrY 5296218 5296886 -19416193 + BSR/Beta Satellite Satellite 1 668 -5 566 253 34 8 chrY 5296980 5297277 -19415802 + BSR/Beta Satellite Satellite 1 304 -49 527 281 11 35 chrY 5297356 5297660 -19415419 + BSR/Beta Satellite Satellite 1 296 -14 529 254 34 46 chrY 5297788 5298479 -19414600 + BSR/Beta Satellite Satellite 1 682 -27 1370 281 17 17 chrY 5298795 5299669 -19413410 + BSR/Beta Satellite Satellite 1 873 -10 1187 288 19 6 chrY 5299790 5300374 -19412705 + BSR/Beta Satellite Satellite 1 591 -125 559 275 37 38 chrY 5300491 5301059 -19412020 + BSR/Beta Satellite Satellite 1 567 -7 543 302 15 17 chrY 5301248 5302053 -19411026 + BSR/Beta Satellite Satellite 1 802 -9 250 293 67 13 chrY 5302772 5302847 -19410232 - LTR32 LTR ERVL -1 470 392 1604 180 22 0 chrY 5302847 5303125 -19409954 - AluSp SINE Alu -29 284 1 339 284 43 43 chrY 5303126 5303242 -19409837 - LTR32 LTR ERVL -341 130 15 319 49 0 0 chrY 5305965 5306006 -19407073 - L1P LINE L1 -2774 3372 3332 1990 204 35 88 chrY 5306084 5306734 -19406345 + LTR6A LTR ERV1 1 564 0 44147 73 3 2 chrY 5306734 5315595 -19397484 + HERVS71 LTR ERV1 1 8910 -68 1928 215 34 87 chrY 5315595 5316245 -19396834 + LTR6A LTR ERV1 1 564 0 11142 82 3 0 chrY 5316353 5317860 -19395219 - L1PA5 LINE L1 -2774 3372 1862 15448 83 5 2 chrY 5317864 5320662 -19392417 + L1PA5 LINE L1 3365 6173 0 1510 208 0 7 chrY 5321048 5321332 -19391747 + AluSc SINE Alu 3 284 -25 1597 196 3 3 chrY 5322109 5322436 -19390643 - AluSq SINE Alu 0 327 1 22 0 0 0 chrY 5322462 5322484 -19390595 + AT_rich Low_complexity Low_complexity 1 22 0 36 23 0 0 chrY 5323602 5323645 -19389434 + AT_rich Low_complexity Low_complexity 1 43 0 7047 275 56 11 chrY 5323659 5324694 -19388385 + L1PA12 LINE L1 1 988 -6593 504 0 0 0 chrY 5324694 5324750 -19388329 + (TTTCC)n Simple_repeat Simple_repeat 1 56 0 7047 275 56 11 chrY 5324750 5324929 -19388150 + L1PA12 LINE L1 988 1158 -6423 1701 188 3 0 chrY 5324929 5325221 -19387858 - AluSp SINE Alu -19 294 2 7047 275 56 11 chrY 5325221 5325921 -19387158 + L1PA12 LINE L1 1158 2002 -5579 2703 284 108 61 chrY 5325928 5327599 -19385480 + L1PA13 LINE L1 347 1938 -4859 195 100 0 0 chrY 5327599 5327629 -19385450 + (TAA)n Simple_repeat Simple_repeat 1 30 0 2703 284 108 61 chrY 5327629 5328195 -19384884 + L1PA13 LINE L1 1938 2476 -4321 2058 125 0 41 chrY 5328195 5328514 -19384565 + AluY SINE Alu 2 307 -4 2703 284 108 61 chrY 5328514 5328795 -19384284 + L1PA13 LINE L1 2476 3154 -3643 45 0 0 0 chrY 5330162 5330207 -19382872 + AT_rich Low_complexity Low_complexity 1 45 0 236 300 14 0 chrY 5330207 5330277 -19382802 + L1M4c LINE L1 414 484 -5819 1710 195 0 0 chrY 5330633 5330936 -19382143 + AluSq SINE Alu 2 304 -9 711 69 0 0 chrY 5330954 5331056 -19382023 + (GAAAA)n Simple_repeat Simple_repeat 4 105 0 1804 132 34 0 chrY 5331068 5331334 -19381745 - AluSq SINE Alu 0 313 39 25 0 0 0 chrY 5331540 5331565 -19381514 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chrY 5331632 5331660 -19381419 + AT_rich Low_complexity Low_complexity 1 28 0 225 280 21 0 chrY 5331703 5331796 -19381283 + A-rich Low_complexity Low_complexity 3 97 0 393 306 82 22 chrY 5331863 5332131 -19380948 + L1M4c LINE L1 1374 1657 -4727 792 284 94 33 chrY 5332157 5332787 -19380292 + L1M4c LINE L1 2446 3113 -3269 1516 200 7 3 chrY 5332807 5333092 -19379987 - AluSc SINE Alu -23 286 1 231 264 0 0 chrY 5333124 5333177 -19379902 + L1 LINE L1 4527 4579 -1567 1118 279 20 8 chrY 5333189 5333794 -19379285 + BSR/Beta Satellite Satellite 1 612 -59 579 274 24 23 chrY 5333902 5334888 -19378191 + BSR/Beta Satellite Satellite 1 987 -46 1150 303 23 7 chrY 5335024 5335653 -19377426 + BSR/Beta Satellite Satellite 1 639 0 228 302 112 26 chrY 5335747 5335863 -19377216 + BSR/Beta Satellite Satellite 25 150 -2 641 275 15 25 chrY 5335920 5336627 -19376452 + BSR/Beta Satellite Satellite 1 699 -66 228 370 36 0 chrY 5336662 5336800 -19376279 + BSR/Beta Satellite Satellite 6 148 -4 1220 294 29 5 chrY 5336930 5337409 -19375670 + BSR/Beta Satellite Satellite 1 490 -15 1529 196 3 20 chrY 5337416 5337545 -19375534 + AluSg SINE Alu 1 131 -179 551 104 9 0 chrY 5337545 5337651 -19375428 + (TAGA)n Simple_repeat Simple_repeat 4 110 0 1529 196 3 20 chrY 5337651 5337827 -19375252 + AluSg SINE Alu 131 301 -9 1189 300 18 9 chrY 5337859 5338723 -19374356 + BSR/Beta Satellite Satellite 1 871 -254 255 250 22 43 chrY 5338722 5338814 -19374265 - LTR22A LTR ERVK 0 458 369 * 1365 251 44 18 chrY 5338948 5339335 -19373744 - LTR22 LTR ERVK -112 397 1 4506 195 42 4 chrY 5339335 5340354 -19372725 - HERVK22 LTR ERVK 0 6837 3180 408 158 0 13 chrY 5340352 5340428 -19372651 - HERVK22 LTR ERVK -3960 2877 2803 * 1031 159 92 59 chrY 5340428 5340667 -19372412 - LTR17 LTR ERV1 0 780 534 2324 157 2 16 chrY 5340668 5341094 -19371985 - LTR17 LTR ERV1 -360 420 1 2507 174 29 2 chrY 5341094 5341572 -19371507 - HERVK22 LTR ERVK -4031 2806 2316 * 3841 160 67 21 chrY 5341567 5342319 -19370760 - HERVK22 LTR ERVK -6051 786 1 296 273 0 0 chrY 5342319 5342396 -19370683 - LTR22A LTR ERVK 0 458 382 264 170 0 0 chrY 5342436 5342489 -19370590 + (CAG)n Simple_repeat Simple_repeat 3 55 0 1102 254 48 25 chrY 5342579 5342934 -19370145 - LTR22 LTR ERVK -146 363 1 619 330 0 0 chrY 5342936 5343151 -19369928 + BSR/Beta Satellite Satellite 121 335 -44 357 295 0 0 chrY 5343162 5343290 -19369789 + BSR/Beta Satellite Satellite 1 128 -34 533 262 26 34 chrY 5343335 5343696 -19369383 + BSR/Beta Satellite Satellite 1 358 0 243 278 14 14 chrY 5343710 5343782 -19369297 + BSR/Beta Satellite Satellite 23 94 -48 943 297 17 8 chrY 5343801 5344598 -19368481 + BSR/Beta Satellite Satellite 1 804 -35 483 279 20 32 chrY 5344641 5345639 -19367440 + BSR/Beta Satellite Satellite 1 986 -5 1270 280 10 12 chrY 5345811 5346416 -19366663 + BSR/Beta Satellite Satellite 1 603 -15 261 354 8 0 chrY 5346507 5346637 -19366442 + BSR/Beta Satellite Satellite 1 131 -11 468 277 16 23 chrY 5346828 5347101 -19365978 + BSR/Beta Satellite Satellite 1 270 -10 1049 293 4 18 chrY 5347126 5347545 -19365534 + BSR/Beta Satellite Satellite 1 413 -23 576 278 14 21 chrY 5347647 5348299 -19364780 + BSR/Beta Satellite Satellite 1 646 -4 364 303 0 42 chrY 5348371 5348513 -19364566 + BSR/Beta Satellite Satellite 3 138 -4 389 337 8 0 chrY 5348525 5348722 -19364357 + BSR/Beta Satellite Satellite 1 198 -6 1041 297 3 0 chrY 5348818 5349114 -19363965 + BSR/Beta Satellite Satellite 21 317 -62 580 295 2 5 chrY 5349142 5349515 -19363564 + BSR/Beta Satellite Satellite 1 372 -35 278 294 32 26 chrY 5349623 5349839 -19363240 + BSR/Beta Satellite Satellite 1 217 -6 * 555 258 11 46 chrY 5349753 5350284 -19362795 + BSR/Beta Satellite Satellite 1 512 -11 423 292 18 37 chrY 5350366 5350874 -19362205 + BSR/Beta Satellite Satellite 1 498 -5 548 282 14 14 chrY 5350893 5351445 -19361634 + BSR/Beta Satellite Satellite 1 551 0 1174 263 38 2 chrY 5351542 5351931 -19361148 + BSR/Beta Satellite Satellite 1 402 -6 322 294 28 32 chrY 5351942 5352233 -19360846 + BSR/Beta Satellite Satellite 1 289 0 506 269 9 39 chrY 5352351 5352998 -19360081 + BSR/Beta Satellite Satellite 1 627 0 680 316 25 0 chrY 5353382 5353651 -19359428 + BSR/Beta Satellite Satellite 1 275 -171 549 236 17 36 chrY 5353862 5354709 -19358370 + BSR/Beta Satellite Satellite 1 830 -22 899 270 32 35 chrY 5354917 5355228 -19357851 + BSR/Beta Satellite Satellite 21 330 -49 292 344 12 24 chrY 5355281 5355470 -19357609 + BSR/Beta Satellite Satellite 1 186 -7 306 345 0 0 chrY 5355553 5355672 -19357407 + BSR/Beta Satellite Satellite 4 122 -20 503 263 16 40 chrY 5355804 5356433 -19356646 + BSR/Beta Satellite Satellite 1 613 -23 328 357 37 4 chrY 5356591 5356802 -19356277 + BSR/Beta Satellite Satellite 1 217 -7 1100 288 24 4 chrY 5356821 5357241 -19355838 + BSR/Beta Satellite Satellite 1 428 -7 590 264 22 15 chrY 5357257 5357638 -19355441 + BSR/Beta Satellite Satellite 1 383 -44 2171 100 31 0 chrY 5357711 5358002 -19355077 - AluY SINE Alu -11 300 1 1142 293 6 6 chrY 5358017 5358687 -19354392 + BSR/Beta Satellite Satellite 1 670 -48 411 253 0 0 chrY 5358699 5358813 -19354266 + BSR/Beta Satellite Satellite 1 114 -50 579 300 6 18 chrY 5358907 5359317 -19353762 + BSR/Beta Satellite Satellite 1 404 -63 857 283 20 31 chrY 5359474 5360012 -19353067 + BSR/Beta Satellite Satellite 1 532 -20 1945 252 69 20 chrY 5360038 5360796 -19352283 - L1M4 LINE L1 -729 5445 4629 180 0 0 0 chrY 5360796 5360816 -19352263 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 1945 252 69 20 chrY 5360816 5361058 -19352021 - L1M4 LINE L1 -1545 4629 4400 363 248 8 8 chrY 5361062 5361183 -19351896 + L1 LINE L1 3905 4025 -2121 4656 163 2 10 chrY 5361189 5361975 -19351104 - LTR17 LTR ERV1 0 780 1 1944 112 0 7 chrY 5361975 5362269 -19350810 - HERV17 LTR ERV1 0 8626 8335 295 26 0 0 chrY 5362259 5362298 -19350781 - HERV17 LTR ERV1 -1078 7548 7510 * 3941 103 4 0 chrY 5362291 5362853 -19350226 - HERV17 LTR ERV1 -2607 6019 5456 * 6279 118 4 2 chrY 5362840 5363792 -19349287 - HERV17 LTR ERV1 -3923 4703 3750 6780 113 9 1 chrY 5363811 5364121 -19348958 - HERV17 LTR ERV1 -5166 3460 3154 180 0 0 0 chrY 5364121 5364141 -19348938 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 6780 113 9 1 chrY 5364141 5364853 -19348226 - HERV17 LTR ERV1 -5472 3154 2430 2159 121 0 6 chrY 5364842 5365174 -19347905 - HERV17 LTR ERV1 -6616 2010 1681 * 9557 140 42 38 chrY 5365173 5367029 -19346050 - HERV17 LTR ERV1 -6762 1864 2 4515 173 8 6 chrY 5367029 5367805 -19345274 - LTR17 LTR ERV1 0 780 4 981 234 7 0 chrY 5367835 5368104 -19344975 + L1 LINE L1 4057 4327 -1819 1899 141 3 3 chrY 5368258 5368572 -19344507 - AluY SINE Alu 0 314 1 1329 251 27 51 chrY 5368789 5369199 -19343880 + MER61B LTR ERV1 1 400 -25 207 173 0 0 chrY 5369203 5369255 -19343824 + A-rich Low_complexity Low_complexity 1 52 0 352 236 24 39 chrY 5369283 5369410 -19343669 + MER61B-int LTR ERV1 19 143 -5074 416 244 17 17 chrY 5369468 5369587 -19343492 + MER61B-int LTR ERV1 280 398 -4819 1588 199 12 39 chrY 5369650 5370081 -19342998 + MER61B-int LTR ERV1 422 840 -4377 1147 211 31 0 chrY 5370081 5370342 -19342737 + MER61B-int LTR ERV1 944 1212 -4005 * 9195 219 69 64 chrY 5370338 5374173 -19338906 + MER61B-int LTR ERV1 1361 5216 -1 1667 219 16 40 chrY 5374178 5374607 -19338472 + MER61B LTR ERV1 5 423 -2 317 285 16 8 chrY 5374637 5374760 -19338319 - L1 LINE L1 -1293 4853 4730 1116 234 23 23 chrY 5374843 5375099 -19337980 + AluJo SINE Alu 13 268 -44 306 352 0 0 chrY 5375296 5375472 -19337607 - L1 LINE L1 -3324 2822 2647 297 196 54 11 chrY 5375501 5375593 -19337486 + T-rich Low_complexity Low_complexity 2 97 0 376 194 24 59 chrY 5375650 5375820 -19337259 + T-rich Low_complexity Low_complexity 4 167 0 195 139 0 0 chrY 5375843 5375879 -19337200 + (TTTTA)n Simple_repeat Simple_repeat 3 38 0 202 197 56 14 chrY 5375896 5375967 -19337112 + T-rich Low_complexity Low_complexity 5 78 0 1396 204 62 0 chrY 5376379 5376653 -19336426 - AluSq SINE Alu -20 293 3 1396 280 22 32 chrY 5377557 5378018 -19335061 - LTR32 LTR ERVL -1 470 15 405 86 0 0 chrY 5379868 5379926 -19333153 + (TG)n Simple_repeat Simple_repeat 1 58 0 21 100 0 0 chrY 5380298 5380368 -19332711 + AT_rich Low_complexity Low_complexity 1 70 0 31 58 0 0 chrY 5380787 5380839 -19332240 + AT_rich Low_complexity Low_complexity 1 52 0 1542 195 50 0 chrY 5381224 5381343 -19331736 + AluY SINE Alu 1 113 -198 6170 44 5 0 chrY 5381343 5382092 -19330987 + L1PA3 LINE L1 5403 6155 0 1542 195 50 0 chrY 5382092 5382254 -19330825 + AluY SINE Alu 113 296 -15 29 28 0 0 chrY 5382758 5382794 -19330285 + AT_rich Low_complexity Low_complexity 1 36 0 1668 175 11 7 chrY 5384114 5384400 -19328679 - AluSc SINE Alu -14 295 9 5134 268 17 3 chrY 5384447 5386176 -19326903 + L1PA12 LINE L1 3 2007 -5574 1283 298 23 20 chrY 5386170 5386569 -19326510 + L1PA13 LINE L1 335 734 -6053 * 372 368 144 14 chrY 5386632 5386993 -19326086 + L1PA13 LINE L1 851 1258 -5529 1888 260 63 42 chrY 5387009 5387800 -19325279 + L1PA13 LINE L1 1410 2217 -4570 1616 247 117 24 chrY 5387797 5388472 -19324607 + L1PA13 LINE L1 2425 3162 -3635 * 253 343 22 15 chrY 5389380 5389517 -19323562 + L1M4c LINE L1 418 555 -5748 1678 188 26 0 chrY 5389863 5390166 -19322913 + AluSq SINE Alu 3 313 0 24 67 0 0 chrY 5390480 5390525 -19322554 + AT_rich Low_complexity Low_complexity 1 45 0 262 237 13 0 chrY 5390550 5390626 -19322453 + A-rich Low_complexity Low_complexity 3 79 0 284 329 47 12 chrY 5390692 5390947 -19322132 + L1M4c LINE L1 1370 1633 -4751 572 298 77 5 chrY 5391140 5391519 -19321560 + L1M4c LINE L1 2701 3106 -3276 286 23 47 0 chrY 5391522 5391565 -19321514 + (TTTA)n Simple_repeat Simple_repeat 4 48 0 1271 230 7 11 chrY 5391570 5391848 -19321231 - AluSc SINE Alu -32 277 1 277 281 56 43 chrY 5391880 5392183 -19320896 + L1 LINE L1 4526 4832 -1314 536 268 8 10 chrY 5392192 5392509 -19320570 + BSR/Beta Satellite Satellite 1 316 0 999 288 22 20 chrY 5392539 5393866 -19319213 + BSR/Beta Satellite Satellite 1 1328 -39 455 274 19 19 chrY 5393919 5394428 -19318651 + BSR/Beta Satellite Satellite 1 509 -46 1017 281 14 20 chrY 5394563 5395192 -19317887 + BSR/Beta Satellite Satellite 1 625 0 285 299 31 20 chrY 5395279 5395426 -19317653 + BSR/Beta Satellite Satellite 1 148 -58 511 262 6 33 chrY 5395446 5396075 -19317004 + BSR/Beta Satellite Satellite 1 612 -28 246 325 34 17 chrY 5396243 5396360 -19316719 + BSR/Beta Satellite Satellite 258 376 -3 879 289 23 7 chrY 5396477 5397334 -19315745 + BSR/Beta Satellite Satellite 1 870 -2 896 309 33 8 chrY 5397362 5397956 -19315123 + BSR/Beta Satellite Satellite 1 608 -122 281 319 11 0 chrY 5398067 5398161 -19314918 + BSR/Beta Satellite Satellite 1 95 -47 470 279 21 14 chrY 5398269 5399054 -19314025 + BSR/Beta Satellite Satellite 1 790 -25 539 303 11 4 chrY 5399088 5399289 -19313790 + BSR/Beta Satellite Satellite 1 202 -6 552 249 18 38 chrY 5399688 5399952 -19313127 + BSR/Beta Satellite Satellite 1 258 -15 244 363 0 10 chrY 5399983 5400085 -19312994 + BSR/Beta Satellite Satellite 22 122 -20 538 276 6 21 chrY 5400224 5400835 -19312244 + BSR/Beta Satellite Satellite 1 602 -30 1081 287 27 20 chrY 5401259 5402945 -19310134 + BSR/Beta Satellite Satellite 1 1697 -53 542 282 26 23 chrY 5403143 5404048 -19309031 + BSR/Beta Satellite Satellite 1 907 -2 1056 311 14 14 chrY 5404137 5404693 -19308386 + BSR/Beta Satellite Satellite 1 555 -8 302 298 50 0 chrY 5404777 5404898 -19308181 + BSR/Beta Satellite Satellite 3 129 -23 853 288 20 14 chrY 5404970 5405399 -19307680 + BSR/Beta Satellite Satellite 1 431 -60 497 259 20 44 chrY 5405456 5405965 -19307114 + BSR/Beta Satellite Satellite 1 496 0 392 289 17 30 chrY 5405979 5406460 -19306619 + BSR/Beta Satellite Satellite 1 474 -6 1060 289 13 7 chrY 5406633 5406934 -19306145 + BSR/Beta Satellite Satellite 28 330 -49 552 273 0 37 chrY 5406990 5407185 -19305894 + BSR/Beta Satellite Satellite 1 187 0 245 266 0 13 chrY 5407216 5407295 -19305784 + BSR/Beta Satellite Satellite 35 112 -40 633 243 14 35 chrY 5407569 5408113 -19304966 + BSR/Beta Satellite Satellite 1 532 -27 301 341 22 7 chrY 5408281 5408416 -19304663 + BSR/Beta Satellite Satellite 2 138 -14 1135 279 45 0 chrY 5408519 5408935 -19304144 + BSR/Beta Satellite Satellite 1 434 0 457 321 13 25 chrY 5409011 5409384 -19303695 + BSR/Beta Satellite Satellite 1 368 0 964 310 13 24 chrY 5409419 5410070 -19303009 + BSR/Beta Satellite Satellite 1 643 -75 378 267 37 14 chrY 5410108 5410241 -19302838 + BSR/Beta Satellite Satellite 1 136 -39 473 292 18 22 chrY 5410290 5410770 -19302309 + BSR/Beta Satellite Satellite 1 478 -30 444 299 4 2 chrY 5410795 5411105 -19301974 + BSR/Beta Satellite Satellite 1 310 -67 1121 309 9 2 chrY 5411172 5411922 -19301157 + BSR/Beta Satellite Satellite 1 754 -47 536 276 6 19 chrY 5411974 5412400 -19300679 + BSR/Beta Satellite Satellite 1 420 -5 248 209 0 75 chrY 5412427 5412494 -19300585 + BSR/Beta Satellite Satellite 42 103 -39 278 314 10 0 chrY 5412563 5412665 -19300414 + BSR/Beta Satellite Satellite 40 142 -10 508 272 12 51 chrY 5412818 5413436 -19299643 + BSR/Beta Satellite Satellite 1 593 -42 1236 264 18 10 chrY 5413981 5414477 -19298602 + BSR/Beta Satellite Satellite 1 499 0 585 276 38 19 chrY 5414521 5415216 -19297863 + BSR/Beta Satellite Satellite 1 708 -56 990 283 28 6 chrY 5415235 5415557 -19297522 + BSR/Beta Satellite Satellite 1 329 -50 507 284 16 30 chrY 5415580 5416117 -19296962 + BSR/Beta Satellite Satellite 1 529 0 483 281 16 14 chrY 5416129 5416752 -19296327 + BSR/Beta Satellite Satellite 1 624 -66 891 296 20 27 chrY 5416907 5417491 -19295588 + BSR/Beta Satellite Satellite 1 580 -46 533 270 21 32 chrY 5417806 5418506 -19294573 + BSR/Beta Satellite Satellite 1 692 -7 1131 287 23 16 chrY 5418821 5419323 -19293756 + BSR/Beta Satellite Satellite 1 505 -1 466 275 18 22 chrY 5419338 5419785 -19293294 + BSR/Beta Satellite Satellite 1 444 -50 872 317 36 7 chrY 5419799 5420586 -19292493 + BSR/Beta Satellite Satellite 1 809 -35 519 259 54 19 chrY 5420631 5421473 -19291606 + BSR/Beta Satellite Satellite 1 871 0 824 288 21 12 chrY 5421503 5421829 -19291250 + BSR/Beta Satellite Satellite 35 363 -16 1340 202 113 14 chrY 5421980 5422351 -19290728 - LTR22 LTR ERVK -172 408 1 382 277 20 15 chrY 5422355 5422535 -19290544 + BSR/Beta Satellite Satellite 1 180 0 393 319 24 3 chrY 5422571 5422954 -19290125 + BSR/Beta Satellite Satellite 1 390 0 1000 308 26 9 chrY 5422991 5423774 -19289305 + BSR/Beta Satellite Satellite 1 796 -46 574 262 17 38 chrY 5423824 5424065 -19289014 + BSR/Beta Satellite Satellite 1 235 -44 535 252 23 4 chrY 5424109 5424458 -19288621 + BSR/Beta Satellite Satellite 1 355 -39 482 287 18 13 chrY 5424502 5424782 -19288297 + BSR/Beta Satellite Satellite 1 281 -6 1196 276 13 19 chrY 5424889 5425561 -19287518 + BSR/Beta Satellite Satellite 1 667 -20 541 287 10 28 chrY 5425580 5426334 -19286745 + BSR/Beta Satellite Satellite 1 740 -3 303 322 27 4 chrY 5426511 5426670 -19286409 + BSR/Beta Satellite Satellite 1 162 -15 836 312 26 2 chrY 5426795 5427198 -19285881 + BSR/Beta Satellite Satellite 1 412 0 466 277 10 32 chrY 5427257 5427603 -19285476 + BSR/Beta Satellite Satellite 1 338 -35 6137 110 23 2 chrY 5427726 5428605 -19284474 - MER11D LTR ERVK 0 897 1 15805 79 10 1 chrY 5428605 5431154 -19281925 - HERVK11D LTR ERVK 0 7752 5100 347 359 33 22 chrY 5431286 5431470 -19281609 - L2 LINE L2 -2835 479 294 213 178 59 59 chrY 5431677 5431778 -19281301 + (TATATG)n Simple_repeat Simple_repeat 4 104 0 401 174 64 35 chrY 5431787 5431959 -19281120 + (TA)n Simple_repeat Simple_repeat 1 177 0 575 294 34 21 chrY 5431970 5432208 -19280871 - MLT1C LTR MaLR -192 275 35 207 0 0 0 chrY 5432209 5432232 -19280847 + (T)n Simple_repeat Simple_repeat 1 23 0 366 153 38 77 chrY 5432915 5433098 -19279981 + (CATATA)n Simple_repeat Simple_repeat 2 177 0 * 370 161 77 37 chrY 5433075 5433414 -19279665 + (TA)n Simple_repeat Simple_repeat 1 352 0 366 153 42 76 chrY 5433356 5433948 -19279131 + (CATATA)n Simple_repeat Simple_repeat 1 572 0 * 19143 89 9 6 chrY 5483956 5488968 -19224111 - HERVK11D LTR ERVK -2647 5105 1 6934 91 23 2 chrY 5488968 5489845 -19223234 - MER11D LTR ERVK 0 897 3 941 321 8 2 chrY 5489870 5490591 -19222488 + BSR/Beta Satellite Satellite 1 724 -46 668 281 19 19 chrY 5490651 5491716 -19221363 + BSR/Beta Satellite Satellite 1 1064 -6 561 291 21 90 chrY 5491812 5492004 -19221075 + BSR/Beta Satellite Satellite 21 225 -154 1283 6 41 0 chrY 5492004 5492173 -19220906 + (TTTC)n Simple_repeat Simple_repeat 3 178 0 561 291 21 90 chrY 5492173 5492189 -19220890 + BSR/Beta Satellite Satellite 225 241 -138 1565 189 23 7 chrY 5492189 5492491 -19220588 - AluSc SINE Alu -2 307 1 561 291 21 90 chrY 5492491 5492614 -19220465 + BSR/Beta Satellite Satellite 241 330 -49 475 280 22 31 chrY 5492677 5492918 -19220161 + BSR/Beta Satellite Satellite 1 238 -15 564 280 16 33 chrY 5493109 5493760 -19219319 + BSR/Beta Satellite Satellite 1 640 0 318 379 8 0 chrY 5493920 5494077 -19219002 + BSR/Beta Satellite Satellite 1 158 -30 954 274 22 13 chrY 5494136 5494782 -19218297 + BSR/Beta Satellite Satellite 1 651 -5 418 298 5 9 chrY 5494796 5494953 -19218126 + BSR/Beta Satellite Satellite 1 156 -44 858 316 15 6 chrY 5495023 5495349 -19217730 + BSR/Beta Satellite Satellite 35 363 -16 930 307 11 4 chrY 5495365 5495814 -19217265 + BSR/Beta Satellite Satellite 1 452 -54 530 270 34 19 chrY 5496119 5496812 -19216267 + BSR/Beta Satellite Satellite 1 703 -4 833 265 11 62 chrY 5497129 5497828 -19215251 + BSR/Beta Satellite Satellite 1 663 -51 532 284 5 28 chrY 5497874 5498640 -19214439 + BSR/Beta Satellite Satellite 1 748 -38 261 377 15 0 chrY 5498819 5498949 -19214130 + BSR/Beta Satellite Satellite 7 138 -14 1192 271 27 21 chrY 5499052 5500350 -19212729 + BSR/Beta Satellite Satellite 1 1305 -9 731 314 9 6 chrY 5500362 5500832 -19212247 + BSR/Beta Satellite Satellite 1 471 -35 618 226 9 0 chrY 5500874 5501037 -19212042 + BSR/Beta Satellite Satellite 1 164 -46 548 273 12 16 chrY 5501061 5501710 -19211369 + BSR/Beta Satellite Satellite 1 646 -5 914 311 16 22 chrY 5501753 5502463 -19210616 + BSR/Beta Satellite Satellite 1 705 -24 598 278 16 17 chrY 5502498 5503559 -19209520 + BSR/Beta Satellite Satellite 1 1059 -6 1111 281 18 33 chrY 5503652 5504405 -19208674 + BSR/Beta Satellite Satellite 1 741 -33 461 265 15 38 chrY 5504561 5504753 -19208326 + BSR/Beta Satellite Satellite 1 187 -15 471 265 9 33 chrY 5504789 5505166 -19207913 + BSR/Beta Satellite Satellite 1 367 -41 231 297 27 0 chrY 5505343 5505417 -19207662 + BSR/Beta Satellite Satellite 77 152 0 896 275 33 7 chrY 5505579 5506450 -19206629 + BSR/Beta Satellite Satellite 1 894 -46 979 300 17 4 chrY 5506466 5507091 -19205988 + BSR/Beta Satellite Satellite 1 633 -81 401 258 0 39 chrY 5507137 5507265 -19205814 + BSR/Beta Satellite Satellite 1 123 -43 565 279 17 25 chrY 5507318 5508260 -19204819 + BSR/Beta Satellite Satellite 1 934 0 797 270 19 19 chrY 5508365 5508628 -19204451 + BSR/Beta Satellite Satellite 36 298 -81 7952 187 26 15 chrY 5508630 5511214 -19201865 + MER61-int LTR ERV1 2141 4818 -399 243 0 0 0 chrY 5511216 5511243 -19201836 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 788 224 0 11 chrY 5511245 5511419 -19201660 + MER61-int LTR ERV1 4872 5043 -174 554 212 80 57 chrY 5511428 5511640 -19201439 - HERVKC4 LTR ERVK -2166 3096 2880 21 0 0 0 chrY 5512475 5512496 -19200583 + AT_rich Low_complexity Low_complexity 1 21 0 1309 159 0 43 chrY 5513075 5513308 -19199771 - AluSq SINE Alu -86 227 5 31 0 0 0 chrY 5514483 5514514 -19198565 + AT_rich Low_complexity Low_complexity 1 31 0 4528 285 16 15 chrY 5514530 5516281 -19196798 + L1PA12 LINE L1 1 2007 -5574 1143 319 71 5 chrY 5516312 5516735 -19196344 + L1PA13 LINE L1 346 796 -5991 336 369 6 6 chrY 5516961 5517121 -19195958 + L1PA13 LINE L1 1099 1258 -5529 2370 261 71 33 chrY 5517122 5518796 -19194283 + L1PA13 LINE L1 1394 3154 -3643 6273 132 7 14 chrY 5519874 5520930 -19192149 - MER11C LTR ERVK -23 1048 1 6988 98 0 1 chrY 5520930 5521928 -19191151 - HERVK11 LTR ERVK 0 7953 6957 * 7873 87 15 2 chrY 5521915 5523088 -19189991 - HERVK11 LTR ERVK -1188 6765 5525 869 143 0 0 chrY 5523086 5523226 -19189853 - HERVK11 LTR ERVK -3352 4601 4462 * 7304 65 4 0 chrY 5523200 5524169 -19188910 - HERVK11 LTR ERVK -4069 3884 2912 2701 106 35 2 chrY 5524161 5524742 -19188337 - HERVK11 LTR ERVK -5253 2700 1165 * 3455 164 35 14 chrY 5524717 5525370 -19187709 - HERVK11 LTR ERVK -7081 872 206 1926 162 0 0 chrY 5525358 5525686 -19187393 - HERVK11 LTR ERVK -7625 328 1 * 6183 123 6 40 chrY 5525703 5526797 -19186282 - MER11C LTR ERVK -14 1057 1 1334 246 0 0 chrY 5527514 5527791 -19185288 + AluSq SINE Alu 2 278 -35 653 12 0 24 chrY 5527794 5527877 -19185202 + (GAAA)n Simple_repeat Simple_repeat 1 81 0 2127 105 7 7 chrY 5527883 5528177 -19184902 + AluY SINE Alu 5 298 -13 487 309 7 22 chrY 5528687 5528962 -19184117 + L1M4 LINE L1 1371 1641 -4743 415 287 96 32 chrY 5529006 5529599 -19183480 + L1M4 LINE L1 2444 3066 -3316 1138 177 12 129 chrY 5529599 5529932 -19183147 - AluSg SINE Alu -6 294 1 269 325 31 24 chrY 5529957 5530249 -19182830 + L1 LINE L1 4521 4814 -1332 415 267 68 4 chrY 5530276 5530434 -19182645 + BSR/Beta Satellite Satellite 1 168 -11 233 227 11 45 chrY 5530562 5530650 -19182429 + L1M4 LINE L1 4966 5050 -1332 438 288 25 10 chrY 5530687 5530924 -19182155 + BSR/Beta Satellite Satellite 1 240 -40 768 266 70 67 chrY 5530994 5531226 -19181853 + BSR/Beta Satellite Satellite 35 270 -109 1716 185 0 7 chrY 5531226 5531523 -19181556 - AluSc SINE Alu -14 295 1 768 266 70 67 chrY 5531523 5531621 -19181458 + BSR/Beta Satellite Satellite 270 366 -13 1278 278 11 24 chrY 5531638 5533152 -19179927 + BSR/Beta Satellite Satellite 1 1495 -2 557 278 99 14 chrY 5533303 5533515 -19179564 + BSR/Beta Satellite Satellite 21 250 -129 2028 118 3 0 chrY 5533515 5533802 -19179277 + AluY SINE Alu 1 288 -23 568 107 64 4 chrY 5533802 5534041 -19179038 + (TA)n Simple_repeat Simple_repeat 1 253 0 530 311 6 9 chrY 5534048 5534517 -19178562 + BSR/Beta Satellite Satellite 1 467 -11 4158 113 2 0 chrY 5534592 5535178 -19177901 - LTR14C LTR ERVK 0 587 1 398 245 5 18 chrY 5535342 5535498 -19177581 + BSR/Beta Satellite Satellite 1 153 -15 532 279 14 28 chrY 5535531 5535922 -19177157 + BSR/Beta Satellite Satellite 1 385 -27 272 356 27 7 chrY 5536092 5536238 -19176841 + BSR/Beta Satellite Satellite 3 151 -1 616 335 12 2 chrY 5536266 5536619 -19176460 + BSR/Beta Satellite Satellite 1 356 -35 501 279 13 38 chrY 5536672 5537168 -19175911 + BSR/Beta Satellite Satellite 1 483 -7 423 257 20 46 chrY 5537189 5537438 -19175641 + BSR/Beta Satellite Satellite 1 242 -26 402 295 0 0 chrY 5537568 5537701 -19175378 + BSR/Beta Satellite Satellite 1 133 -64 1197 280 15 22 chrY 5537858 5538513 -19174566 + BSR/Beta Satellite Satellite 1 650 -52 570 262 6 29 chrY 5538740 5539391 -19173688 + BSR/Beta Satellite Satellite 1 635 0 1039 296 20 11 chrY 5539486 5540246 -19172833 + BSR/Beta Satellite Satellite 1 1082 -382 1471 243 0 0 chrY 5540246 5540551 -19172528 + AluSg SINE Alu 3 307 -3 1039 296 20 11 chrY 5540551 5540898 -19172181 + BSR/Beta Satellite Satellite 1082 1424 -40 980 291 27 16 chrY 5540975 5541775 -19171304 + BSR/Beta Satellite Satellite 1 809 -34 477 267 35 47 chrY 5541822 5542243 -19170836 + BSR/Beta Satellite Satellite 1 415 -3 569 282 18 19 chrY 5542255 5542656 -19170423 + BSR/Beta Satellite Satellite 1 400 -29 1053 283 9 6 chrY 5542722 5543044 -19170035 + BSR/Beta Satellite Satellite 41 363 -16 1073 321 0 2 chrY 5543060 5543521 -19169558 + BSR/Beta Satellite Satellite 1 460 -47 525 283 26 14 chrY 5543579 5544560 -19168519 + BSR/Beta Satellite Satellite 1 993 0 879 280 26 43 chrY 5544655 5545168 -19167911 + BSR/Beta Satellite Satellite 1 521 -2288 7612 55 0 1 chrY 5545168 5546413 -19166666 + L1PA4 LINE L1 4904 6147 -8 879 280 26 43 chrY 5546413 5547500 -19165579 + BSR/Beta Satellite Satellite 521 2797 -12 1022 287 13 15 chrY 5547745 5548643 -19164436 + BSR/Beta Satellite Satellite 1 896 -44 1107 295 8 10 chrY 5548713 5549322 -19163757 + BSR/Beta Satellite Satellite 1 607 -122 232 234 19 65 chrY 5549391 5549498 -19163581 + BSR/Beta Satellite Satellite 33 134 -2 * 346 310 0 0 chrY 5549424 5549528 -19163551 + BSR/Beta Satellite Satellite 1 104 -43 714 290 17 21 chrY 5549578 5550656 -19162423 + BSR/Beta Satellite Satellite 1 1073 0 1087 285 27 16 chrY 5550751 5551323 -19161756 + BSR/Beta Satellite Satellite 1 578 -42 366 240 115 0 chrY 5551305 5551401 -19161678 + AluSg/x SINE Alu 190 296 -4 * 319 329 11 30 chrY 5551403 5551602 -19161477 + BSR/Beta Satellite Satellite 1 195 -1 603 261 4 39 chrY 5551720 5552219 -19160860 + BSR/Beta Satellite Satellite 1 481 -10 391 337 28 4 chrY 5552409 5552610 -19160469 + BSR/Beta Satellite Satellite 1 205 -7 968 294 27 23 chrY 5552629 5553218 -19159861 + BSR/Beta Satellite Satellite 1 591 0 491 277 0 8 chrY 5553231 5553350 -19159729 + BSR/Beta Satellite Satellite 16 133 -9 265 347 21 0 chrY 5553437 5553532 -19159547 - BSR/Beta Satellite Satellite -16 136 40 618 264 20 30 chrY 5553622 5554102 -19158977 - BSR/Beta Satellite Satellite -4 475 1 499 242 33 16 chrY 5554128 5554308 -19158771 - BSR/Beta Satellite Satellite 0 183 1 331 315 5 0 chrY 5554374 5554524 -19158555 - BSR/Beta Satellite Satellite -23 150 1 16947 76 2 1 chrY 5554543 5557439 -19155640 - L1PA4 LINE L1 -3 6152 3254 10933 68 1 0 chrY 5557440 5558860 -19154219 + L1PA4 LINE L1 1849 3269 -2877 1218 276 11 20 chrY 5558860 5559513 -19153566 - BSR/Beta Satellite Satellite -49 647 1 461 245 24 69 chrY 5559537 5559740 -19153339 - BSR/Beta Satellite Satellite 0 193 1 1078 313 18 5 chrY 5559798 5560778 -19152301 - BSR/Beta Satellite Satellite -5 992 1 626 253 26 24 chrY 5560855 5561628 -19151451 - BSR/Beta Satellite Satellite 0 774 1 1170 299 7 6 chrY 5561677 5562220 -19150859 - BSR/Beta Satellite Satellite -44 543 1 1147 268 38 6 chrY 5562240 5562553 -19150526 - BSR/Beta Satellite Satellite -16 363 41 1243 259 32 22 chrY 5562567 5563439 -19149640 - BSR/Beta Satellite Satellite -45 880 1 354 318 60 0 chrY 5563542 5563727 -19149352 - BSR/Beta Satellite Satellite -7 196 1 437 301 0 0 chrY 5563845 5563958 -19149121 - BSR/Beta Satellite Satellite -27 115 3 609 265 10 39 chrY 5564023 5564467 -19148612 - BSR/Beta Satellite Satellite 0 431 1 1209 299 10 12 chrY 5564610 5565370 -19147709 - BSR/Beta Satellite Satellite -51 758 1 1037 267 22 26 chrY 5565490 5567234 -19145845 - BSR/Beta Satellite Satellite -2 1736 1 271 303 26 92 chrY 5567561 5567713 -19145366 - BSR/Beta Satellite Satellite 0 142 1 1083 302 22 5 chrY 5567746 5568127 -19144952 - BSR/Beta Satellite Satellite -49 387 1 493 279 43 42 chrY 5568216 5569153 -19143926 - BSR/Beta Satellite Satellite 0 937 1 565 280 8 18 chrY 5569177 5569791 -19143288 - BSR/Beta Satellite Satellite 0 607 1 527 261 44 22 chrY 5569988 5570263 -19142816 - BSR/Beta Satellite Satellite 0 281 1 923 305 19 12 chrY 5570373 5570698 -19142381 - BSR/Beta Satellite Satellite -27 352 26 548 277 26 26 chrY 5570806 5571596 -19141483 - BSR/Beta Satellite Satellite -4 996 175 197 0 0 67 chrY 5571596 5571626 -19141453 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 548 277 26 26 chrY 5571626 5571802 -19141277 - BSR/Beta Satellite Satellite -825 175 1 689 342 33 3 chrY 5571889 5572364 -19140715 - BSR/Beta Satellite Satellite -49 489 1 1006 327 3 9 chrY 5572382 5572715 -19140364 - BSR/Beta Satellite Satellite -16 363 33 1132 264 23 18 chrY 5572785 5573610 -19139469 - BSR/Beta Satellite Satellite -44 828 1 455 344 11 4 chrY 5573629 5573835 -19139244 - BSR/Beta Satellite Satellite -14 207 1 618 276 22 26 chrY 5573942 5574654 -19138425 - BSR/Beta Satellite Satellite 0 709 1 1244 290 28 22 chrY 5574705 5575443 -19137636 - BSR/Beta Satellite Satellite -25 742 1 517 271 29 27 chrY 5575534 5576569 -19136510 - BSR/Beta Satellite Satellite -5 1037 1 399 260 10 10 chrY 5576622 5576745 -19136334 - BSR/Beta Satellite Satellite -2 123 1 7290 149 6 10 chrY 5576745 5578726 -19134353 - L1PA6 LINE L1 -1 6153 4170 779 250 40 20 chrY 5578727 5578927 -19134152 - BSR/Beta Satellite Satellite -150 229 26 479 322 19 7 chrY 5579033 5579235 -19133844 - BSR/Beta Satellite Satellite -4 204 1 414 251 21 50 chrY 5579246 5579591 -19133488 - BSR/Beta Satellite Satellite 0 334 1 1065 294 15 19 chrY 5579605 5581285 -19131794 - BSR/Beta Satellite Satellite -2 1674 1 466 279 85 27 chrY 5581295 5581589 -19131490 - L1 LINE L1 -1314 5534 5224 1486 215 7 3 chrY 5581617 5581910 -19131169 + AluSc SINE Alu 1 294 -15 427 321 104 41 chrY 5581935 5582542 -19130537 - L1M4c LINE L1 -3294 3554 2910 239 143 20 0 chrY 5582563 5582612 -19130467 - L1M4c LINE L1 -4319 2530 2481 2953 184 32 10 chrY 5582625 5583223 -19129856 + LTR10E LTR ERV1 3 613 -20 300 359 14 9 chrY 5583226 5583438 -19129641 - L1M4c LINE L1 -4785 2065 1853 9126 51 0 4 chrY 5583469 5585323 -19127756 - L1PA4 LINE L1 -2 6153 4303 1677 205 0 0 chrY 5585803 5586101 -19126978 - AluSq SINE Alu -15 298 1 1249 263 34 15 chrY 5586277 5587555 -19125524 - BSR/Beta Satellite Satellite -44 1301 1 236 250 0 0 chrY 5587571 5587615 -19125464 + AluJ/monomer SINE Alu 1 44 -258 533 295 20 16 chrY 5587633 5587914 -19125165 - BSR/Beta Satellite Satellite 0 282 1 527 268 31 16 chrY 5587925 5588669 -19124410 - BSR/Beta Satellite Satellite 0 755 1 1341 292 32 2 chrY 5588720 5589477 -19123602 - BSR/Beta Satellite Satellite -13 779 1 337 296 24 8 chrY 5589569 5589752 -19123327 - BSR/Beta Satellite Satellite 0 185 1 970 298 10 12 chrY 5589781 5590171 -19122908 - BSR/Beta Satellite Satellite -44 892 503 254 28 0 28 chrY 5590171 5590207 -19122872 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 970 298 10 12 chrY 5590207 5590675 -19122404 - BSR/Beta Satellite Satellite -433 503 1 1174 281 15 9 chrY 5590698 5591924 -19121155 - BSR/Beta Satellite Satellite -45 1233 1 488 276 7 41 chrY 5592374 5592956 -19120123 - BSR/Beta Satellite Satellite 0 562 1 1117 305 5 14 chrY 5593096 5593835 -19119244 - BSR/Beta Satellite Satellite -51 732 1 546 280 48 15 chrY 5593930 5594888 -19118191 - BSR/Beta Satellite Satellite 0 989 1 905 324 4 3 chrY 5594927 5595397 -19117682 - BSR/Beta Satellite Satellite -44 470 1 827 254 36 61 chrY 5595414 5595509 -19117570 - BSR/Beta Satellite Satellite -16 363 267 1821 139 3 36 chrY 5595509 5595810 -19117269 + AluSc SINE Alu 11 301 -8 827 254 36 61 chrY 5595810 5596044 -19117035 - BSR/Beta Satellite Satellite -112 267 42 439 304 5 3 chrY 5596123 5596638 -19116441 - BSR/Beta Satellite Satellite -1 516 1 1645 199 3 3 chrY 5598590 5598881 -19114198 + AluSq SINE Alu 1 294 -19 255 93 0 0 chrY 5598881 5598924 -19114155 + (CATA)n Simple_repeat Simple_repeat 2 44 0 1645 199 3 3 chrY 5598924 5598939 -19114140 + AluSq SINE Alu 293 307 -6 2272 94 3 28 chrY 5599116 5599435 -19113644 + AluY SINE Alu 1 311 0 597 268 101 53 chrY 5599807 5600432 -19112647 + L1 LINE L1 2209 2867 -3279 1402 229 3 10 chrY 5600432 5600737 -19112342 - AluSc SINE Alu -6 303 1 597 268 101 53 chrY 5600737 5600756 -19112323 + L1 LINE L1 2867 2884 -3262 348 287 97 17 chrY 5600768 5601057 -19112022 + L1 LINE L1 4524 4835 -1311 836 282 43 8 chrY 5601063 5601534 -19111545 + BSR/Beta Satellite Satellite 1 454 -521 1717 173 0 14 chrY 5601534 5601812 -19111267 + AluSg SINE Alu 1 274 -36 836 282 43 8 chrY 5601812 5601994 -19111085 + BSR/Beta Satellite Satellite 454 962 -13 924 281 24 18 chrY 5602005 5602336 -19110743 + BSR/Beta Satellite Satellite 1 333 -46 617 270 11 28 chrY 5602399 5603587 -19109492 + BSR/Beta Satellite Satellite 1 1167 -30 1042 276 8 0 chrY 5603713 5603981 -19109098 + BSR/Beta Satellite Satellite 27 296 -83 336 293 35 17 chrY 5604049 5604273 -19108806 + BSR/Beta Satellite Satellite 1 228 0 555 260 10 27 chrY 5604456 5604961 -19108118 + BSR/Beta Satellite Satellite 1 496 -4 281 314 19 9 chrY 5605276 5605381 -19107698 + BSR/Beta Satellite Satellite 33 138 -14 1145 284 27 8 chrY 5605483 5606235 -19106844 + BSR/Beta Satellite Satellite 1 766 -34 968 274 11 31 chrY 5606306 5606932 -19106147 + BSR/Beta Satellite Satellite 1 613 -105 1607 166 4 4 chrY 5606983 5607242 -19105837 - AluSg SINE Alu -36 274 16 366 276 29 10 chrY 5607242 5607371 -19105708 - BSR/Beta Satellite Satellite -5 397 1 339 265 109 37 chrY 5607377 5607671 -19105408 - L1 LINE L1 -1311 4835 4521 540 254 113 62 chrY 5607679 5607698 -19105381 - L1 LINE L1 -3262 2884 2867 1391 228 10 16 chrY 5607698 5608005 -19105074 + AluSc SINE Alu 1 305 -4 540 254 113 62 chrY 5608005 5608628 -19104451 - L1 LINE L1 -3279 2867 2209 613 278 25 23 chrY 5608723 5609539 -19103540 + BSR/Beta Satellite Satellite 1 817 -50 956 309 27 9 chrY 5609553 5610335 -19102744 + BSR/Beta Satellite Satellite 1 795 -53 552 267 14 25 chrY 5610468 5611233 -19101846 + BSR/Beta Satellite Satellite 1 756 -42 1007 286 15 6 chrY 5611304 5611629 -19101450 + BSR/Beta Satellite Satellite 35 362 -17 903 288 17 2 chrY 5611650 5612098 -19100981 + BSR/Beta Satellite Satellite 1 454 -47 489 267 18 29 chrY 5612160 5613015 -19100064 + BSR/Beta Satellite Satellite 1 845 -8 335 307 34 8 chrY 5613032 5613231 -19099848 + BSR/Beta Satellite Satellite 1 204 0 1210 223 3 47 chrY 5613325 5613643 -19099436 + BSR/Beta Satellite Satellite 27 330 -49 264 325 58 8 chrY 5613968 5614088 -19098991 + BSR/Beta Satellite Satellite 12 137 -15 1226 265 31 0 chrY 5614191 5614516 -19098563 + BSR/Beta Satellite Satellite 1 335 -44 636 269 13 16 chrY 5614546 5615003 -19098076 + BSR/Beta Satellite Satellite 1 455 -41 706 309 40 13 chrY 5615096 5615394 -19097685 + BSR/Beta Satellite Satellite 58 363 -16 897 298 13 4 chrY 5615410 5615857 -19097222 + BSR/Beta Satellite Satellite 1 451 -55 496 241 26 45 chrY 5615914 5616247 -19096832 + BSR/Beta Satellite Satellite 1 326 -42 484 266 7 39 chrY 5616400 5617120 -19095959 + BSR/Beta Satellite Satellite 1 696 -38 352 346 12 6 chrY 5617265 5617524 -19095555 + BSR/Beta Satellite Satellite 1 260 -1 1165 253 14 17 chrY 5617547 5618309 -19094770 + BSR/Beta Satellite Satellite 1 760 -7 447 191 46 6 chrY 5618375 5618548 -19094531 + (TA)n Simple_repeat Simple_repeat 1 180 0 211 159 23 23 chrY 5618551 5618595 -19094484 + (TATATG)n Simple_repeat Simple_repeat 3 46 0 938 296 12 18 chrY 5618698 5619026 -19094053 + BSR/Beta Satellite Satellite 45 370 -9 566 356 12 3 chrY 5619043 5619363 -19093716 + BSR/Beta Satellite Satellite 9 331 -48 414 251 20 20 chrY 5619375 5619499 -19093580 + BSR/Beta Satellite Satellite 1 124 -43 597 287 17 13 chrY 5619575 5620593 -19092486 + BSR/Beta Satellite Satellite 1 1022 -60 900 290 22 19 chrY 5620759 5621073 -19092006 + BSR/Beta Satellite Satellite 38 352 -27 381 275 27 50 chrY 5621107 5621444 -19091635 + BSR/Beta Satellite Satellite 1 329 0 552 284 28 18 chrY 5621628 5622365 -19090714 + BSR/Beta Satellite Satellite 1 744 -51 292 366 21 0 chrY 5622414 5622556 -19090523 + BSR/Beta Satellite Satellite 2 146 -6 891 239 35 0 chrY 5622643 5622873 -19090206 + BSR/Beta Satellite Satellite 1 238 -141 612 269 14 28 chrY 5622983 5623759 -19089320 + BSR/Beta Satellite Satellite 1 765 -6 1007 286 31 9 chrY 5623855 5624180 -19088899 + BSR/Beta Satellite Satellite 21 352 -27 444 269 4 32 chrY 5624192 5624381 -19088698 + BSR/Beta Satellite Satellite 1 183 -27 36313 84 9 8 chrY 5624433 5630546 -19082533 - L1PA5 LINE L1 -12 6142 11 1384 270 90 10 chrY 5630557 5631548 -19081531 - L1M2 LINE L1 -736 5447 4400 1459 242 24 12 chrY 5631552 5632044 -19081035 + L1M2 LINE L1 3905 4402 -1744 1476 236 11 24 chrY 5632062 5632431 -19080648 + MER61B LTR ERV1 60 423 -2 414 165 51 0 chrY 5632450 5632529 -19080550 + MER61B-int LTR ERV1 19 101 -5116 1986 214 26 33 chrY 5632667 5633210 -19079869 + MER61B-int LTR ERV1 297 835 -4382 1370 144 31 8 chrY 5633220 5633476 -19079603 + MER61B-int LTR ERV1 952 1213 -4004 * 3896 173 24 14 chrY 5633471 5634385 -19078694 + MER61B-int LTR ERV1 1361 2283 -2934 2364 136 34 2 chrY 5634439 5634852 -19078227 + HERVL-A1 LTR ERVL 5229 5654 0 1840 201 14 3 chrY 5634852 5635206 -19077873 + MLT2A1 LTR ERVL 1 358 -86 198 71 0 0 chrY 5636093 5636121 -19076958 + (CAAAA)n Simple_repeat Simple_repeat 5 32 0 22 35 0 0 chrY 5636632 5636661 -19076418 + AT_rich Low_complexity Low_complexity 1 29 0 317 297 123 21 chrY 5636772 5637008 -19076071 + L1M4 LINE L1 2678 2937 -3209 761 347 84 34 chrY 5637157 5637743 -19075336 + L1M4 LINE L1 3132 3772 -2374 1265 203 153 24 chrY 5637743 5638122 -19074957 - MSTA LTR MaLR 0 428 1 761 347 84 34 chrY 5638122 5638354 -19074725 + L1M4 LINE L1 3772 3991 -2155 473 289 9 33 chrY 5638355 5638566 -19074513 + L1M4 LINE L1 4051 4256 -1890 442 243 19 0 chrY 5638734 5638841 -19074238 + MER2 DNA MER2_type 2 110 -235 1340 275 29 60 chrY 5639129 5639361 -19073718 + MER66B-int LTR ERV1 4548 4786 -2970 1908 176 0 0 chrY 5639361 5639656 -19073423 - AluSc SINE Alu -13 296 2 1340 275 29 60 chrY 5639656 5640548 -19072531 + MER66B-int LTR ERV1 4786 6189 -1567 1396 223 28 6 chrY 5640691 5641014 -19072065 + MER66B-int LTR ERV1 6347 6676 0 1244 222 92 58 chrY 5641014 5641482 -19071597 + MER66B LTR ERV1 1 484 -2 470 217 83 54 chrY 5641541 5641854 -19071225 + MER96B DNA MER1_type? 31 352 -65 1716 251 60 22 chrY 5641871 5642532 -19070547 - L1MC1 LINE L1 -22 6311 5588 348 243 66 52 chrY 5642555 5642691 -19070388 - L1MC1 LINE L1 -833 5511 5374 472 176 140 0 chrY 5642692 5642828 -19070251 + FRAM SINE Alu 21 175 -1 225 214 24 24 chrY 5642828 5642912 -19070167 + GA-rich Low_complexity Low_complexity 2 85 0 1164 220 12 4 chrY 5643007 5643248 -19069831 - AluSx SINE Alu -6 306 64 211 271 0 0 chrY 5643449 5643497 -19069582 + (TG)n Simple_repeat Simple_repeat 2 49 0 242 296 178 7 chrY 5643720 5643872 -19069207 - MIR SINE MIR -28 234 57 189 0 0 0 chrY 5643973 5643994 -19069085 + (A)n Simple_repeat Simple_repeat 1 21 0 7171 36 5 0 chrY 5644310 5646054 -19067025 + L1PA3 LINE L1 4466 6213 0 33 56 0 0 chrY 5646941 5646995 -19066084 + AT_rich Low_complexity Low_complexity 1 54 0 402 298 0 0 chrY 5648825 5648929 -19064150 + FLAM_C SINE Alu 3 106 -37 304 169 17 0 chrY 5648945 5649004 -19064075 - MER1B DNA MER1_type -13 326 267 1069 220 73 12 chrY 5649157 5649416 -19063663 - MER1B DNA MER1_type -64 275 1 23 0 0 0 chrY 5649439 5649462 -19063617 + AT_rich Low_complexity Low_complexity 1 23 0 722 211 46 59 chrY 5649523 5649760 -19063319 + AluJb SINE Alu 1 234 -78 4262 93 12 5 chrY 5649795 5650378 -19062701 - LTR14C LTR ERVK 0 587 1 14544 96 18 1 chrY 5650402 5652490 -19060589 - HERVK14C LTR ERVK -5 7412 5289 1012 95 0 7 chrY 5652482 5652630 -19060449 - HERVK14C LTR ERVK -4872 2545 2399 * 9830 127 8 1 chrY 5652615 5654157 -19058922 - HERVK14C LTR ERVK -5865 1552 1 4122 114 3 0 chrY 5654157 5654742 -19058337 - LTR14C LTR ERVK 0 587 1 262 200 31 0 chrY 5655220 5655285 -19057794 + (TA)n Simple_repeat Simple_repeat 2 68 0 298 163 0 0 chrY 5655285 5655334 -19057745 + LTR14C LTR ERVK 539 587 0 4158 154 15 28 chrY 5655678 5657056 -19056023 - pTR5 LTR ERV1 -29 2409 741 21 0 0 0 chrY 5660793 5660814 -19052265 + AT_rich Low_complexity Low_complexity 1 21 0 1671 166 0 0 chrY 5661198 5661463 -19051616 - AluSc SINE Alu -44 265 1 1958 117 3 49 chrY 5661779 5662087 -19050992 + AluY SINE Alu 5 298 -13 23 0 0 0 chrY 5662269 5662292 -19050787 + AT_rich Low_complexity Low_complexity 1 23 0 39786 43 22 2 chrY 5662292 5668309 -19044770 - L1PA2 LINE L1 -3 6152 13 854 279 27 44 chrY 5668586 5668883 -19044196 - AluJo SINE Alu -10 292 1 28 0 0 0 chrY 5668990 5669018 -19044061 + AT_rich Low_complexity Low_complexity 1 28 0 1173 248 22 3 chrY 5670352 5670670 -19042409 - L1MB5 LINE L1 -13 6161 5838 1079 224 106 22 chrY 5670707 5671113 -19041966 - L1MB5 LINE L1 -429 5745 5306 22 0 0 0 chrY 5671648 5671670 -19041409 + AT_rich Low_complexity Low_complexity 1 22 0 891 121 21 0 chrY 5672207 5672347 -19040732 + AluSp/q SINE Alu 171 313 0 1418 213 28 7 chrY 5673216 5673532 -19039547 - AluSg SINE Alu 0 310 3 1168 232 34 10 chrY 5674037 5674330 -19038749 + AluJb SINE Alu 3 302 0 449 264 64 7 chrY 5674602 5674742 -19038337 - MLT1A1 LTR MaLR -2 363 216 1885 139 7 3 chrY 5674743 5675030 -19038049 - AluSc SINE Alu 0 309 22 354 120 0 0 chrY 5675031 5675081 -19037998 - Alu SINE Alu -253 50 1 * 422 266 42 21 chrY 5675081 5675222 -19037857 - MLT1A1 LTR MaLR -141 224 81 596 278 43 36 chrY 5675229 5675531 -19037548 - LTR65-int LTR ERV1 -258 4678 4375 311 235 24 0 chrY 5675625 5675710 -19037369 - LTR65-int LTR ERV1 -721 4215 4129 1302 195 13 9 chrY 5675748 5675856 -19037223 - AluJb SINE Alu -80 232 126 186 43 0 0 chrY 5675856 5675879 -19037200 + (TTTG)n Simple_repeat Simple_repeat 1 23 0 1302 195 13 9 chrY 5675879 5676001 -19037078 - AluJb SINE Alu -186 126 1 1149 232 45 65 chrY 5676001 5676351 -19036728 - LTR65-int LTR ERV1 -805 4131 3791 2206 107 3 3 chrY 5676351 5676651 -19036428 + AluY SINE Alu 1 300 -11 1149 232 45 65 chrY 5676651 5676765 -19036314 - LTR65-int LTR ERV1 -1145 3791 3676 2118 131 23 0 chrY 5676866 5677171 -19035908 - AluSx SINE Alu 0 312 1 1660 251 55 39 chrY 5677302 5678263 -19034816 - LTR65-int LTR ERV1 -3647 1289 287 263 232 0 0 chrY 5678277 5678346 -19034733 + GA-rich Low_complexity Low_complexity 2 70 0 275 311 19 0 chrY 5679529 5679635 -19033444 - LTR65-int LTR ERV1 -4632 304 197 198 0 0 0 chrY 5680154 5680176 -19032903 + (A)n Simple_repeat Simple_repeat 1 22 0 180 0 0 0 chrY 5680460 5680480 -19032599 + (A)n Simple_repeat Simple_repeat 1 20 0 1916 301 46 55 chrY 5681431 5682551 -19030528 + L1M3de LINE L1 286 2053 -4600 27 49 0 0 chrY 5682555 5682596 -19030483 + AT_rich Low_complexity Low_complexity 1 41 0 1860 158 3 3 chrY 5682598 5682902 -19030177 + AluSx SINE Alu 3 306 -6 1354 286 100 61 chrY 5682907 5683683 -19029396 + L1M2c LINE L1 16 788 -6421 761 267 17 75 chrY 5683703 5684119 -19028960 + L1M2c LINE L1 1553 1944 -5265 253 351 16 42 chrY 5684120 5684311 -19028768 - L1MEc LINE L1 -5918 478 293 347 313 16 60 chrY 5684339 5684521 -19028558 - L1MEc LINE L1 -6184 212 39 1232 201 80 14 chrY 5684800 5685088 -19027991 - AluSx SINE Alu -4 308 2 1233 280 83 7 chrY 5685302 5685895 -19027184 - LTR65 LTR ERV1 -31 638 1 1298 207 30 30 chrY 5686484 5686789 -19026290 + AluSg SINE Alu 1 305 -5 778 232 0 24 chrY 5686852 5687016 -19026063 - FRAM SINE Alu -16 160 1 229 333 20 78 chrY 5687522 5687600 -19025479 + L2 LINE L2 3110 3176 -96 2209 111 0 3 chrY 5687600 5687898 -19025181 - AluY SINE Alu -14 297 1 229 333 20 78 chrY 5687898 5687972 -19025107 + L2 LINE L2 3176 3253 -19 240 35 0 0 chrY 5689963 5689992 -19023087 + (A)n Simple_repeat Simple_repeat 1 29 0 202 277 21 75 chrY 5690904 5690998 -19022081 + MIR SINE MIR 118 206 -56 453 295 7 0 chrY 5691078 5691217 -19021862 - MIR SINE MIR -25 237 98 940 257 23 36 chrY 5692107 5692410 -19020669 - MLT1E LTR MaLR -2 591 293 1451 218 3 24 chrY 5692584 5692877 -19020202 + AluJo SINE Alu 7 293 -19 199 365 66 7 chrY 5692904 5693041 -19020038 - L2 LINE L2 -2531 783 639 25 51 0 0 chrY 5693041 5693080 -19019999 + AT_rich Low_complexity Low_complexity 1 39 0 272 380 32 16 chrY 5693130 5693317 -19019762 - L2 LINE L2 -2854 460 271 1104 276 38 19 chrY 5693983 5694407 -19018672 - MLT1C LTR MaLR 0 467 36 22 0 0 0 chrY 5694439 5694461 -19018618 + AT_rich Low_complexity Low_complexity 1 22 0 2047 147 0 0 chrY 5695840 5696133 -19016946 + AluY SINE Alu 1 293 -18 25 110 0 0 chrY 5696144 5696253 -19016826 + AT_rich Low_complexity Low_complexity 1 109 0 28 0 0 0 chrY 5697012 5697040 -19016039 + AT_rich Low_complexity Low_complexity 1 28 0 1129 185 40 77 chrY 5697329 5697680 -19015399 + MLT1B LTR MaLR 1 338 -52 268 305 61 0 chrY 5698531 5698613 -19014466 + MIR SINE MIR 49 135 -127 404 283 25 8 chrY 5698785 5698905 -19014174 - MIR3 SINE MIR -21 187 66 193 193 57 91 chrY 5699680 5699768 -19013311 + L2 LINE L2 1550 1634 -1680 1815 149 20 3 chrY 5699947 5700248 -19012831 - AluSp SINE Alu -7 306 1 358 332 84 50 chrY 5700726 5701106 -19011973 + L2 LINE L2 2917 3309 -4 3180 158 32 0 chrY 5701212 5701774 -19011305 - LTR19B LTR ERV1 0 580 1 1153 149 0 34 chrY 5701793 5702001 -19011078 - HERVFH19I LTR ERV1 -20 7699 7499 * 2661 159 16 36 chrY 5701996 5702544 -19010535 - LTR19B-int LTR ERV1 -332 5254 4718 * 2918 115 9 26 chrY 5702543 5703202 -19009877 - LTR19B-int LTR ERV1 -489 6109 3889 207 0 0 0 chrY 5703202 5703225 -19009854 + (TTG)n Simple_repeat Simple_repeat 2 24 0 5791 21 0 0 chrY 5703225 5703887 -19009192 - L1PA3 LINE L1 -9 6146 5485 6258 30 0 6 chrY 5703887 5704692 -19008387 + L1P LINE L1 4595 5394 -752 2372 232 69 6 chrY 5704692 5705370 -19007709 - LTR19B-int LTR ERV1 -2098 3119 2399 744 239 18 18 chrY 5705358 5705630 -19007449 - LTR19B-int LTR ERV1 -3091 2126 1855 * 739 209 0 0 chrY 5705640 5705798 -19007281 - AluSc SINE Alu 0 305 148 24 0 0 0 chrY 5706326 5706350 -19006729 + AT_rich Low_complexity Low_complexity 1 24 0 4762 135 20 23 chrY 5707135 5707974 -19005105 - LTR19B-int LTR ERV1 -3621 1965 1129 3510 195 29 14 chrY 5707960 5708479 -19004600 - LTR19B-int LTR ERV1 -4665 921 307 * 306 50 0 0 chrY 5708479 5708519 -19004560 + (GA)n Simple_repeat Simple_repeat 2 41 0 3510 195 29 14 chrY 5708519 5708831 -19004248 - LTR19B-int LTR ERV1 -5279 307 1 1505 156 15 0 chrY 5708831 5709101 -19003978 - LTR19B LTR ERV1 0 580 307 2069 142 11 0 chrY 5709108 5709460 -19003619 - THE1B-int LTR MaLR -1224 356 1 229 88 0 0 chrY 5709460 5709494 -19003585 - THE1B LTR MaLR 0 364 331 42 77 0 0 chrY 5709730 5709821 -19003258 + AT_rich Low_complexity Low_complexity 1 91 0 782 302 97 38 chrY 5710116 5710537 -19002542 - MLT1J LTR MaLR -47 464 19 3441 183 34 43 chrY 5711640 5712626 -19000453 - MER11C LTR ERVK -4 1067 1 255 300 131 0 chrY 5712637 5712767 -19000312 + LTR67 LTR ERVL 403 549 -8 24 32 0 0 chrY 5712824 5712855 -19000224 + AT_rich Low_complexity Low_complexity 1 31 0 1654 141 35 28 chrY 5713257 5713547 -18999532 + AluSx SINE Alu 1 292 -20 23 0 0 0 chrY 5714544 5714567 -18998512 + AT_rich Low_complexity Low_complexity 1 23 0 268 254 76 0 chrY 5715024 5715142 -18997937 - L1M4 LINE L1 -1539 4607 4481 5731 113 18 18 chrY 5715747 5717089 -18995990 - L1PA7 LINE L1 -8 6146 4799 301 174 0 58 chrY 5717102 5717171 -18995908 + L1MC4 LINE L1 6641 6705 -1337 6359 141 32 3 chrY 5717229 5718376 -18994703 - L1PA7 LINE L1 -1350 4796 3616 1838 166 3 3 chrY 5718376 5718677 -18994402 - AluSx SINE Alu -6 306 6 517 110 0 0 chrY 5718864 5718937 -18994142 + AluYb8 SINE Alu 163 235 -83 1487 158 12 62 chrY 5719889 5720211 -18992868 + MER52C LTR ERV1 964 1269 -9 25 51 0 0 chrY 5720391 5720430 -18992649 + AT_rich Low_complexity Low_complexity 1 39 0 238 311 110 37 chrY 5721013 5721177 -18991902 - MIR SINE MIR -67 195 20 37647 78 7 2 chrY 5721440 5727562 -18985517 + L1PA4 LINE L1 1 6154 -1 374 354 107 28 chrY 5727656 5728151 -18984928 + L2 LINE L2 2427 2960 -354 512 257 7 14 chrY 5728212 5728352 -18984727 - MLT1D LTR MaLR -67 438 300 301 248 27 27 chrY 5728470 5728632 -18984447 - L1M4b LINE L1 -5285 1662 1366 15053 165 25 12 chrY 5728986 5729892 -18983187 - HERVK22 LTR ERVK -4004 2833 1940 2311 88 10 0 chrY 5729892 5730189 -18982890 - AluY SINE Alu -11 300 1 15053 165 25 12 chrY 5730189 5732035 -18981044 - HERVK22 LTR ERVK -4897 1940 45 2866 117 19 2 chrY 5732035 5732727 -18980352 - L1P2 LINE L1 -420 5734 5032 5215 121 70 0 chrY 5732738 5733510 -18979569 - LTR12 LTR ERV1 0 826 1 4804 113 13 8 chrY 5733510 5734271 -18978808 - HERV17 LTR ERV1 -11 8388 7621 1704 151 63 38 chrY 5734264 5735022 -18978057 - HERV17 LTR ERV1 -5156 1740 703 * 23960 126 30 21 chrY 5735009 5739819 -18973260 - HERV17 LTR ERV1 -3455 4944 1 5216 125 36 2 chrY 5739819 5740618 -18972461 - LTR12 LTR ERV1 0 826 1 683 148 0 0 chrY 5740619 5740734 -18972345 - L1P2 LINE L1 -1123 5023 4909 221 0 0 33 chrY 5741810 5741840 -18971239 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 23 0 0 0 chrY 5742381 5742404 -18970675 + AT_rich Low_complexity Low_complexity 1 23 0 21 71 0 0 chrY 5743725 5743767 -18969312 + AT_rich Low_complexity Low_complexity 1 42 0 32 0 0 0 chrY 5744016 5744048 -18969031 + AT_rich Low_complexity Low_complexity 1 32 0 317 0 0 65 chrY 5744145 5744191 -18968888 + (TTTTA)n Simple_repeat Simple_repeat 5 47 0 1504 212 11 0 chrY 5744196 5744479 -18968600 - AluSx SINE Alu -25 287 2 2005 109 27 0 chrY 5745107 5745401 -18967678 + AluY SINE Alu 10 311 0 2644 39 0 0 chrY 5745440 5745749 -18967330 - AluY SINE Alu -2 309 1 461 125 0 12 chrY 5748457 5748537 -18964542 + (TTCC)n Simple_repeat Simple_repeat 4 82 0 361 172 0 65 chrY 5749832 5749925 -18963154 + L1MA9 LINE L1 6078 6164 -148 22 0 0 0 chrY 5750080 5750102 -18962977 + AT_rich Low_complexity Low_complexity 1 22 0 7177 70 0 0 chrY 5750574 5752277 -18960802 + L1PA5 LINE L1 4439 6141 -13 1600 182 24 7 chrY 5752478 5752774 -18960305 - AluSq SINE Alu -12 301 1 22 0 0 0 chrY 5753139 5753161 -18959918 + AT_rich Low_complexity Low_complexity 1 22 0 2004 127 3 0 chrY 5753161 5753445 -18959634 + AluSc SINE Alu 1 285 -24 245 128 21 0 chrY 5753448 5753495 -18959584 + (TAA)n Simple_repeat Simple_repeat 2 49 0 341 275 29 54 chrY 5753662 5753873 -18959206 + L1ME LINE L1 5353 5556 -608 395 124 4 77 chrY 5754249 5754513 -18958566 + (TA)n Simple_repeat Simple_repeat 1 244 0 288 127 0 84 chrY 5754527 5754669 -18958410 + (TA)n Simple_repeat Simple_repeat 1 130 0 471 88 10 83 chrY 5754685 5754877 -18958202 + (TA)n Simple_repeat Simple_repeat 1 178 0 434 112 9 86 chrY 5755129 5755607 -18957472 + (TA)n Simple_repeat Simple_repeat 1 440 0 505 304 87 11 chrY 5755868 5756052 -18957027 - MIR SINE MIR -25 237 40 355 303 35 28 chrY 5756265 5756290 -18956789 + L1MDa LINE L1 2514 2537 -4003 3370 130 41 5 chrY 5756290 5756850 -18956229 + LTR19B LTR ERV1 1 580 0 355 303 35 28 chrY 5756850 5757141 -18955938 + L1MDa LINE L1 2537 2859 -3681 730 273 119 61 chrY 5757205 5757616 -18955463 + MLT2B1 LTR ERVL 5 439 -81 222 156 0 0 chrY 5757624 5757669 -18955410 + (TG)n Simple_repeat Simple_repeat 2 46 0 321 278 134 56 chrY 5759783 5760089 -18952990 + L2 LINE L2 2196 2525 -789 2670 42 0 3 chrY 5760288 5760600 -18952479 + AluY SINE Alu 1 311 0 299 301 55 35 chrY 5762039 5762295 -18950784 + L1M4 LINE L1 5257 5517 -657 24 0 0 0 chrY 5762414 5762438 -18950641 + AT_rich Low_complexity Low_complexity 1 24 0 30 0 0 0 chrY 5762577 5762607 -18950472 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chrY 5762700 5762729 -18950350 + AT_rich Low_complexity Low_complexity 1 29 0 27 29 0 0 chrY 5764348 5764382 -18948697 + AT_rich Low_complexity Low_complexity 1 34 0 25 51 0 0 chrY 5764524 5764563 -18948516 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chrY 5764669 5764690 -18948389 + AT_rich Low_complexity Low_complexity 1 21 0 3917 166 38 24 chrY 5764884 5765679 -18947400 + L1PA16 LINE L1 5359 6164 -2 21 0 0 0 chrY 5765679 5765700 -18947379 + AT_rich Low_complexity Low_complexity 1 21 0 594 235 0 0 chrY 5768161 5768280 -18944799 + MER41E LTR ERV1 1 119 -393 2261 159 53 127 chrY 5768663 5769398 -18943681 - LTR1 LTR ERV1 -104 681 1 252 231 39 0 chrY 5769573 5769625 -18943454 - LTR33A LTR ERVL -339 184 131 381 162 0 0 chrY 5769675 5769743 -18943336 + (CTA)n Simple_repeat Simple_repeat 1 68 0 2254 81 0 3 chrY 5769744 5770029 -18943050 - AluY SINE Alu -26 285 2 3296 84 0 2 chrY 5770399 5770849 -18942230 - L1PA5 LINE L1 -1795 4351 3903 7377 78 7 0 chrY 5770849 5772655 -18940424 + L1PA5 LINE L1 4354 6139 -15 526 252 0 0 chrY 5772806 5772921 -18940158 + MER41E LTR ERV1 1 115 -397 2689 163 25 94 chrY 5773290 5774037 -18939042 - LTR1 LTR ERV1 -89 696 1 260 231 65 145 chrY 5774209 5774395 -18938684 - LTR33A LTR ERVL -344 179 9 196 178 67 0 chrY 5774656 5774701 -18938378 - L2 LINE L2 -4 3309 3262 379 262 12 0 chrY 5775236 5775320 -18937759 - FRAM SINE Alu -13 153 69 186 43 0 0 chrY 5775356 5775379 -18937700 + (TTAA)n Simple_repeat Simple_repeat 2 24 0 541 162 10 10 chrY 5775390 5775489 -18937590 - FLAM_C SINE Alu -34 109 11 22 0 0 0 chrY 5777449 5777471 -18935608 + AT_rich Low_complexity Low_complexity 1 22 0 330 153 0 0 chrY 5777706 5777765 -18935314 + CT-rich Low_complexity Low_complexity 1 59 0 2051 123 3 0 chrY 5778999 5779316 -18933763 - L1PA6 LINE L1 0 6154 5837 635 121 10 0 chrY 5779317 5779416 -18933663 + L1P3 LINE L1 5433 5532 -622 271 300 64 21 chrY 5783606 5783746 -18929333 + MLT1F LTR MaLR 370 515 -27 1271 252 3 0 chrY 5784214 5784523 -18928556 + AluSx SINE Alu 1 310 -2 1416 194 0 31 chrY 5784574 5785001 -18928078 + AluSx SINE Alu 12 488 -48 510 17 0 0 chrY 5785001 5785060 -18928019 + (GAGAA)n Simple_repeat Simple_repeat 1 59 0 1416 194 0 31 chrY 5785060 5785108 -18927971 + AluSx SINE Alu 488 536 0 471 263 105 7 chrY 5785703 5785855 -18927224 - FRAM SINE Alu -9 167 1 252 325 8 26 chrY 5785973 5786090 -18926989 + MLT1E LTR MaLR 361 475 -118 274 176 20 0 chrY 5786132 5786183 -18926896 + L1MC/D LINE L1 5760 5811 -1997 238 301 19 0 chrY 5786179 5786232 -18926847 - L1P LINE L1 -2579 3567 3517 * 643 11 35 11 chrY 5786232 5786319 -18926760 + (TTTTA)n Simple_repeat Simple_repeat 2 90 0 238 301 19 0 chrY 5786319 5786368 -18926711 - L1P LINE L1 -2629 3517 3463 838 341 78 32 chrY 5787133 5787696 -18925383 - L1M3b LINE L1 -5675 606 18 1504 199 3 28 chrY 5787736 5788051 -18925028 + AluSg SINE Alu 1 308 0 240 306 18 36 chrY 5788152 5788263 -18924816 - L1M3de LINE L1 -5898 755 647 1455 211 58 50 chrY 5788274 5788690 -18924389 - MSTB LTR MaLR -7 419 1 386 346 59 72 chrY 5788720 5789026 -18924053 - L1M3de LINE L1 -5217 1436 1128 1925 157 0 3 chrY 5789026 5789325 -18923754 + AluSx SINE Alu 1 298 -14 386 346 59 72 chrY 5789325 5789608 -18923471 - L1M3de LINE L1 -5525 1128 605 24 32 0 0 chrY 5789854 5789885 -18923194 + AT_rich Low_complexity Low_complexity 1 31 0 305 192 55 0 chrY 5789885 5789958 -18923121 - L1MA4 LINE L1 -11 6289 6213 485 246 36 56 chrY 5789967 5790123 -18922956 + L1MA3 LINE L1 6019 6172 -133 1206 241 0 30 chrY 5790123 5790426 -18922653 + AluJo SINE Alu 2 295 -17 485 246 36 56 chrY 5790426 5790464 -18922615 + L1MA3 LINE L1 6172 6209 -96 1586 198 3 14 chrY 5790499 5790787 -18922292 - AluSx SINE Alu -25 287 3 1308 204 38 4 chrY 5791274 5791539 -18921540 + AluSg SINE Alu 15 288 -22 1158 226 109 19 chrY 5793461 5793893 -18919186 + L1MB5 LINE L1 5254 5746 -428 1079 255 68 9 chrY 5793919 5794244 -18918835 + L1MB5 LINE L1 5818 6161 -13 21 71 0 0 chrY 5794644 5794686 -18918393 + AT_rich Low_complexity Low_complexity 1 42 0 16307 58 11 0 chrY 5795339 5798201 -18914878 + L1PA4 LINE L1 3259 6152 -3 27 0 0 0 chrY 5798428 5798455 -18914624 + AT_rich Low_complexity Low_complexity 1 27 0 836 301 33 18 chrY 5798563 5798835 -18914244 + AluJo SINE Alu 1 276 -36 290 98 20 0 chrY 5800263 5800314 -18912765 + (TTTA)n Simple_repeat Simple_repeat 1 52 0 1619 165 4 7 chrY 5800314 5800593 -18912486 - AluSg SINE Alu -32 278 1 2071 142 0 0 chrY 5802603 5802906 -18910173 + AluSc SINE Alu 1 303 -6 1884 167 10 7 chrY 5803369 5803675 -18909404 - AluSc SINE Alu -2 307 1 26 30 0 0 chrY 5804958 5804991 -18908088 + AT_rich Low_complexity Low_complexity 1 33 0 21 57 0 0 chrY 5805437 5805472 -18907607 + AT_rich Low_complexity Low_complexity 1 35 0 824 254 27 9 chrY 5805540 5805764 -18907315 - AluJb SINE Alu -82 230 3 299 190 0 0 chrY 5806192 5806250 -18906829 + Charlie3 DNA MER1_type 2636 2693 -17 512 235 0 0 chrY 5806261 5806359 -18906720 - AluJ/FLAM SINE Alu -212 100 3 1655 179 7 3 chrY 5811393 5811678 -18901401 - AluSx SINE Alu -26 286 1 1723 177 7 36 chrY 5813455 5813547 -18899532 - AluSx SINE Alu -16 296 203 2506 45 7 3 chrY 5813547 5813855 -18899224 - AluY SINE Alu -2 309 1 1723 177 7 36 chrY 5813855 5814067 -18899012 - AluSx SINE Alu -109 203 1 1187 221 14 11 chrY 5814067 5814352 -18898727 - AluJo SINE Alu -14 298 13 745 260 23 61 chrY 5815295 5815641 -18897438 - L1M4 LINE L1 -421 5753 5421 362 264 77 65 chrY 5815642 5815903 -18897176 - L1M4 LINE L1 -782 5364 5101 23 68 0 0 chrY 5816019 5816063 -18897016 + AT_rich Low_complexity Low_complexity 1 44 0 2703 136 0 7 chrY 5816136 5816562 -18896517 - L1PA8A LINE L1 -1 6130 5708 329 271 39 8 chrY 5816601 5816730 -18896349 - L1M4 LINE L1 -1968 4178 4046 1144 177 0 5 chrY 5816753 5816951 -18896128 - MER107 DNA MER1_type 0 197 1 248 247 139 25 chrY 5816951 5817109 -18895970 + L1M4 LINE L1 4965 5140 -1006 382 286 157 43 chrY 5817442 5817767 -18895312 + L1MDa LINE L1 2261 2622 -3918 318 272 25 0 chrY 5817851 5817932 -18895147 + L1MD2 LINE L1 6017 6099 -260 22 0 0 0 chrY 5818082 5818104 -18894975 + AT_rich Low_complexity Low_complexity 1 22 0 302 315 96 10 chrY 5818336 5818533 -18894546 + L1MC4a LINE L1 6407 6620 -1188 4963 200 14 5 chrY 5818597 5819704 -18893375 - L1P LINE L1 -1902 4244 3128 22 0 0 0 chrY 5819705 5819727 -18893352 + AT_rich Low_complexity Low_complexity 1 22 0 1140 174 60 23 chrY 5820128 5820427 -18892652 + L1P LINE L1 2755 3064 -3082 2551 164 14 115 chrY 5820427 5820813 -18892266 + LTR25 LTR ERV1 1 294 -500 198 0 0 0 chrY 5820813 5820835 -18892244 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2551 164 14 115 chrY 5820835 5821107 -18891972 + LTR25 LTR ERV1 294 592 -202 238 126 74 11 chrY 5821107 5821202 -18891877 + (TA)n Simple_repeat Simple_repeat 2 102 0 26 0 0 0 chrY 5821440 5821466 -18891613 + AT_rich Low_complexity Low_complexity 1 26 0 1614 159 0 8 chrY 5821852 5822109 -18890970 + AluSg SINE Alu 1 255 -55 742 237 33 17 chrY 5822243 5822543 -18890536 + L1MC1 LINE L1 4496 4800 -1346 1928 237 78 21 chrY 5822560 5823408 -18889671 + L1MC1 LINE L1 5333 6311 -22 269 234 72 48 chrY 5823425 5823592 -18889487 - MER96B DNA MER1_type? -65 352 182 1350 147 215 4 chrY 5823593 5823872 -18889207 - LTR12 LTR ERV1 -376 338 1 1323 288 22 35 chrY 5823880 5824789 -18888290 - MER66-int LTR ERV1 -1567 6189 4835 2089 152 0 0 chrY 5824789 5825086 -18887993 + AluSc SINE Alu 1 297 -12 1323 288 22 35 chrY 5825086 5825316 -18887763 - MER66-int LTR ERV1 -2921 4835 4604 503 215 19 0 chrY 5825611 5825718 -18887361 - MER2 DNA MER2_type -235 110 2 279 330 14 38 chrY 5825885 5826097 -18886982 - L1M4 LINE L1 -1889 4257 4051 369 165 35 12 chrY 5826326 5826411 -18886668 + MSTA LTR MaLR 3 89 -339 5666 133 137 116 chrY 5826411 5828072 -18885007 + pTR5 LTR ERV1 743 2438 0 908 227 144 11 chrY 5828094 5828358 -18884721 + MSTA LTR MaLR 130 428 0 838 305 141 30 chrY 5828403 5829204 -18883875 - L1M4 LINE L1 -2448 3698 2809 623 82 0 31 chrY 5829235 5829333 -18883746 - L1PA4 LINE L1 -2 6153 6059 1258 65 0 0 chrY 5829333 5829503 -18883576 + L1PA4 LINE L1 5711 5880 -275 32 95 0 0 chrY 5830028 5830123 -18882956 + AT_rich Low_complexity Low_complexity 1 95 0 2064 82 0 4 chrY 5830251 5830518 -18882561 + AluY SINE Alu 23 288 -23 1989 160 17 3 chrY 5831483 5831839 -18881240 - MLT2A1 LTR ERVL -83 361 1 2618 113 12 16 chrY 5831839 5832265 -18880814 - HERVL-A1 LTR ERVL 0 5654 5231 1281 162 32 40 chrY 5832320 5832622 -18880457 - MER61B-int LTR ERV1 -2936 2281 1981 2365 67 17 0 chrY 5832622 5832920 -18880159 - AluY SINE Alu -8 303 1 1281 162 32 40 chrY 5832920 5832963 -18880116 - MER61B-int LTR ERV1 -3236 1981 1939 249 33 0 0 chrY 5833018 5833048 -18880031 + (GAAAA)n Simple_repeat Simple_repeat 4 33 0 462 256 0 16 chrY 5833065 5833186 -18879893 - MER61B-int LTR ERV1 -4819 398 280 538 150 47 63 chrY 5833247 5833374 -18879705 - MER61B-int LTR ERV1 -5074 143 19 649 262 21 5 chrY 5833391 5833508 -18879571 - MER61B LTR ERV1 0 425 302 183 42 0 0 chrY 5833508 5833532 -18879547 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 649 262 21 5 chrY 5833532 5833605 -18879474 - MER61B LTR ERV1 -123 302 232 28507 38 3 0 chrY 5833673 5838123 -18874956 - L1PA3 LINE L1 0 6155 1695 5688 72 1 1 chrY 5838142 5838945 -18874134 + L1PA3 LINE L1 900 1702 -4444 462 275 16 15 chrY 5838945 5839192 -18873887 - BSR/Beta Satellite Satellite -285 247 1 428 288 28 0 chrY 5839256 5839404 -18873675 - BSR/Beta Satellite Satellite -7 152 1 1187 270 14 8 chrY 5839417 5840072 -18873007 - BSR/Beta Satellite Satellite -44 659 1 551 271 14 37 chrY 5840362 5841078 -18872001 - BSR/Beta Satellite Satellite 0 699 1 2824 19 0 0 chrY 5841118 5841429 -18871650 - AluY SINE Alu 0 311 1 536 246 28 46 chrY 5841692 5841940 -18871139 - BSR/Beta Satellite Satellite -4 243 1 892 263 22 76 chrY 5841970 5842327 -18870752 - BSR/Beta Satellite Satellite -21 358 21 492 295 20 20 chrY 5842447 5842832 -18870247 - BSR/Beta Satellite Satellite 0 384 1 532 273 17 32 chrY 5842844 5843489 -18869590 - BSR/Beta Satellite Satellite 0 635 1 431 316 0 0 chrY 5843556 5843681 -18869398 - BSR/Beta Satellite Satellite 0 125 1 761 327 6 9 chrY 5843696 5844020 -18869059 - BSR/Beta Satellite Satellite -48 331 9 833 282 6 58 chrY 5844037 5844381 -18868698 - BSR/Beta Satellite Satellite -9 370 45 245 253 35 23 chrY 5844395 5844482 -18868597 - BSR/Beta Satellite Satellite -46 96 9 519 138 52 17 chrY 5844504 5844678 -18868401 + (TA)n Simple_repeat Simple_repeat 1 180 0 1040 259 24 16 chrY 5844744 5845525 -18867554 - BSR/Beta Satellite Satellite -69 786 1 395 330 18 0 chrY 5845613 5845781 -18867298 - BSR/Beta Satellite Satellite -8 170 1 533 277 14 35 chrY 5845832 5846612 -18866467 - BSR/Beta Satellite Satellite -44 763 1 580 239 10 58 chrY 5846778 5847103 -18865976 - BSR/Beta Satellite Satellite 0 309 1 360 298 14 0 chrY 5847131 5847275 -18865804 - BSR/Beta Satellite Satellite 0 146 1 838 296 32 35 chrY 5847291 5847960 -18865119 - BSR/Beta Satellite Satellite -4 666 1 629 228 0 0 chrY 5848074 5848197 -18864882 - BSR/Beta Satellite Satellite -9 133 11 589 290 14 23 chrY 5848209 5848496 -18864583 - BSR/Beta Satellite Satellite 0 284 1 1216 281 25 0 chrY 5848532 5848859 -18864220 - BSR/Beta Satellite Satellite -44 335 1 303 352 16 8 chrY 5848964 5849089 -18863990 - BSR/Beta Satellite Satellite -15 137 12 238 278 35 7 chrY 5849160 5849241 -18863838 - BSR/Beta Satellite Satellite -68 148 1 1217 238 0 0 chrY 5849417 5849669 -18863410 - BSR/Beta Satellite Satellite -106 273 22 475 279 23 33 chrY 5849760 5850553 -18862526 - BSR/Beta Satellite Satellite -3 785 1 492 272 3 25 chrY 5850568 5850838 -18862241 - BSR/Beta Satellite Satellite 0 263 1 1095 300 28 3 chrY 5850910 5851717 -18861362 - BSR/Beta Satellite Satellite -16 827 1 720 261 26 36 chrY 5851792 5852557 -18860522 - BSR/Beta Satellite Satellite -18 757 1 1253 280 20 44 chrY 5852604 5853528 -18859551 - BSR/Beta Satellite Satellite -9 902 1 475 295 17 32 chrY 5853562 5853985 -18859094 - BSR/Beta Satellite Satellite 0 416 1 545 295 12 4 chrY 5853999 5854199 -18858880 - BSR/Beta Satellite Satellite -25 201 1 970 266 21 37 chrY 5854210 5854486 -18858593 - BSR/Beta Satellite Satellite -42 271 1 273 358 27 14 chrY 5854514 5854662 -18858417 - BSR/Beta Satellite Satellite -1 151 2 670 261 5 25 chrY 5854950 5855233 -18857846 - BSR/Beta Satellite Satellite 0 277 1 447 306 4 16 chrY 5855256 5855455 -18857624 - BSR/Beta Satellite Satellite -10 196 1 264 352 0 0 chrY 5855530 5855635 -18857444 - BSR/Beta Satellite Satellite -36 106 2 930 315 14 15 chrY 5855707 5856343 -18856736 - BSR/Beta Satellite Satellite -49 635 1 506 238 28 28 chrY 5856458 5856784 -18856295 - BSR/Beta Satellite Satellite -1 326 1 1149 269 17 37 chrY 5856795 5857198 -18855881 - BSR/Beta Satellite Satellite -1 2023 1614 1611 238 69 19 chrY 5857198 5857661 -18855418 + LTR22B LTR ERVK 5 490 -2 1149 269 17 37 chrY 5857661 5858859 -18854220 - BSR/Beta Satellite Satellite -410 1614 1 568 224 31 60 chrY 5858913 5859341 -18853738 - BSR/Beta Satellite Satellite 0 415 1 869 291 31 17 chrY 5859391 5859680 -18853399 - BSR/Beta Satellite Satellite -64 315 23 528 317 15 3 chrY 5859770 5860040 -18853039 - BSR/Beta Satellite Satellite -2 273 1 517 260 33 29 chrY 5860052 5860757 -18852322 - BSR/Beta Satellite Satellite 0 707 1 1153 300 15 4 chrY 5860886 5861665 -18851414 - BSR/Beta Satellite Satellite -9 787 1 1928 147 7 3 chrY 5861784 5862077 -18851002 + AluY SINE Alu 1 294 -17 1217 274 39 16 chrY 5862084 5862920 -18850159 - BSR/Beta Satellite Satellite -15 855 1 268 344 15 8 chrY 5862983 5863114 -18849965 - BSR/Beta Satellite Satellite -7 145 14 611 269 15 31 chrY 5863268 5864055 -18849024 - BSR/Beta Satellite Satellite -11 774 1 493 282 32 36 chrY 5864104 5864407 -18848672 - BSR/Beta Satellite Satellite -4 301 1 1255 264 31 12 chrY 5864433 5864770 -18848309 - BSR/Beta Satellite Satellite -49 343 1 944 278 19 20 chrY 5864861 5866443 -18846636 - BSR/Beta Satellite Satellite -46 1581 1 1209 268 16 26 chrY 5866459 5867694 -18845385 - BSR/Beta Satellite Satellite -4 1222 1 1665 160 7 29 chrY 5867758 5868039 -18845040 - AluSg SINE Alu -35 275 1 1169 283 5 7 chrY 5868061 5868840 -18844239 - BSR/Beta Satellite Satellite -1 777 1 446 284 24 10 chrY 5868920 5869152 -18843927 - BSR/Beta Satellite Satellite -11 235 1 1226 281 20 7 chrY 5869166 5869662 -18843417 - BSR/Beta Satellite Satellite -47 502 1 286 343 14 63 chrY 5869765 5869908 -18843171 - BSR/Beta Satellite Satellite -15 137 2 1126 298 12 21 chrY 5870049 5871577 -18841502 - BSR/Beta Satellite Satellite -58 1513 1 632 275 14 35 chrY 5871649 5872887 -18840192 - BSR/Beta Satellite Satellite -4 1212 1 1022 280 52 11 chrY 5872924 5873265 -18839814 - BSR/Beta Satellite Satellite -46 354 1 7004 87 2 0 chrY 5873265 5874496 -18838583 + L1PA6 LINE L1 4922 6154 0 664 296 0 0 chrY 5874564 5874733 -18838346 - BSR/Beta Satellite Satellite -13 366 198 1876 157 0 7 chrY 5874795 5875094 -18837985 - AluSg1 SINE Alu -4 305 9 425 266 24 8 chrY 5875105 5875229 -18837850 - BSR/Beta Satellite Satellite -219 160 35 589 262 9 14 chrY 5875299 5875572 -18837507 - BSR/Beta Satellite Satellite 0 271 1 668 279 74 17 chrY 5875578 5875876 -18837203 - L1 LINE L1 -1311 4835 4521 1110 209 5 5 chrY 5875905 5876125 -18836954 + AluSc SINE Alu 1 220 -89 667 266 96 53 chrY 5876157 5876327 -18836752 - L1M4c LINE L1 -3264 3118 2957 2534 57 0 10 chrY 5876327 5876641 -18836438 - AluY SINE Alu 0 311 1 667 266 96 53 chrY 5876641 5877116 -18835963 - L1M4c LINE L1 -3425 2957 2445 359 313 58 24 chrY 5877140 5877434 -18835645 - L1M4c LINE L1 -4723 1661 1358 238 209 0 0 chrY 5877829 5877872 -18835207 - L1M4c LINE L1 -5192 1121 1079 1640 193 24 0 chrY 5877918 5878391 -18834688 - AluSq SINE Alu 0 313 12 442 274 22 27 chrY 5880356 5880837 -18832242 + BSR/Beta Satellite Satellite 1 478 -51 652 284 29 83 chrY 5880905 5881163 -18831916 + BSR/Beta Satellite Satellite 29 265 -114 1498 172 21 31 chrY 5881163 5881453 -18831626 - AluY SINE Alu -14 297 11 652 284 29 83 chrY 5881453 5881543 -18831536 + BSR/Beta Satellite Satellite 265 358 -21 1088 273 25 17 chrY 5881563 5883095 -18829984 + BSR/Beta Satellite Satellite 1 1544 -14 1225 283 6 17 chrY 5883203 5883782 -18829297 + BSR/Beta Satellite Satellite 1 572 -43 475 277 56 27 chrY 5883837 5884090 -18828989 + BSR/Beta Satellite Satellite 1 245 -348 414 0 0 0 chrY 5884090 5884136 -18828943 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 475 277 56 27 chrY 5884136 5884359 -18828720 + BSR/Beta Satellite Satellite 245 537 -56 1242 286 13 22 chrY 5884388 5885391 -18827688 + BSR/Beta Satellite Satellite 1 994 -50 1181 270 25 12 chrY 5885405 5885731 -18827348 + BSR/Beta Satellite Satellite 41 370 -9 730 346 4 4 chrY 5885749 5886193 -18826886 + BSR/Beta Satellite Satellite 1 444 -53 254 49 0 24 chrY 5886210 5886251 -18826828 + (CAAAAA)n Simple_repeat Simple_repeat 2 41 0 548 265 19 30 chrY 5886253 5886652 -18826427 + BSR/Beta Satellite Satellite 1 394 0 324 259 9 62 chrY 5886716 5886907 -18826172 + BSR/Beta Satellite Satellite 1 180 -5 1412 296 8 2 chrY 5887001 5887776 -18825303 + BSR/Beta Satellite Satellite 1 779 -3 593 269 22 19 chrY 5887864 5888914 -18824165 + BSR/Beta Satellite Satellite 1 1052 -7 1298 256 31 20 chrY 5888999 5889602 -18823477 + BSR/Beta Satellite Satellite 1 609 -53 311 370 16 0 chrY 5889869 5889996 -18823083 + BSR/Beta Satellite Satellite 10 138 -14 1656 185 4 0 chrY 5890032 5890308 -18822771 + AluJo SINE Alu 15 291 -21 493 253 16 55 chrY 5890370 5890552 -18822527 - L1MC4a LINE L1 -1941 5867 5693 1329 263 28 4 chrY 5890621 5891045 -18822034 + BSR/Beta Satellite Satellite 1 433 0 532 278 24 18 chrY 5891099 5891481 -18821598 + BSR/Beta Satellite Satellite 1 384 0 12165 55 0 1 chrY 5895164 5896664 -18816415 - L1PA4 LINE L1 -841 5305 3807 6943 60 1 0 chrY 5896664 5897491 -18815588 + L1PA4 LINE L1 5325 6153 -2 502 297 12 25 chrY 5900699 5901164 -18811915 + BSR/Beta Satellite Satellite 1 458 -43 1251 231 48 6 chrY 5901235 5901551 -18811528 + BSR/Beta Satellite Satellite 35 363 -16 961 312 6 6 chrY 5901575 5901899 -18811180 + BSR/Beta Satellite Satellite 9 332 -47 342 364 0 0 chrY 5902072 5902201 -18810878 + BSR/Beta Satellite Satellite 9 137 -5 591 252 40 22 chrY 5902263 5903117 -18809962 + BSR/Beta Satellite Satellite 1 868 0 1044 269 13 7 chrY 5903207 5903515 -18809564 + BSR/Beta Satellite Satellite 21 330 -49 674 270 12 30 chrY 5903582 5904690 -18808389 + BSR/Beta Satellite Satellite 1 1087 -37 269 354 17 0 chrY 5904869 5904998 -18808081 + BSR/Beta Satellite Satellite 2 241 -20 1121 237 26 8 chrY 5905103 5905543 -18807536 + BSR/Beta Satellite Satellite 1 447 -14 478 279 19 24 chrY 5905584 5906641 -18806438 + BSR/Beta Satellite Satellite 1 1051 -6 982 264 17 20 chrY 5906738 5907033 -18806046 + BSR/Beta Satellite Satellite 22 315 -64 418 305 31 19 chrY 5907083 5907496 -18805583 + BSR/Beta Satellite Satellite 1 417 -6 429 288 26 29 chrY 5907619 5907829 -18805250 + BSR/Beta Satellite Satellite 1 209 -1 469 285 27 14 chrY 5907840 5908307 -18804772 + BSR/Beta Satellite Satellite 1 473 -14 227 336 32 8 chrY 5908377 5908502 -18804577 + BSR/Beta Satellite Satellite 22 149 -3 1235 259 26 2 chrY 5908624 5909049 -18804030 + BSR/Beta Satellite Satellite 1 435 0 451 285 13 14 chrY 5909061 5909442 -18803637 + BSR/Beta Satellite Satellite 1 380 -44 1132 287 9 6 chrY 5909507 5910192 -18802887 + BSR/Beta Satellite Satellite 1 686 -44 628 262 17 18 chrY 5910265 5911270 -18801809 + BSR/Beta Satellite Satellite 1 1003 -43 1126 286 8 16 chrY 5911401 5912018 -18801061 + BSR/Beta Satellite Satellite 1 612 -15 295 341 0 8 chrY 5912040 5912163 -18800916 + BSR/Beta Satellite Satellite 3 124 -18 491 271 5 23 chrY 5912305 5912926 -18800153 + BSR/Beta Satellite Satellite 1 609 -19 358 342 26 21 chrY 5913089 5913291 -18799788 + BSR/Beta Satellite Satellite 1 202 -7 1251 263 18 27 chrY 5913311 5913560 -18799519 + BSR/Beta Satellite Satellite 1 251 -905 2167 109 0 3 chrY 5913560 5913853 -18799226 + AluY SINE Alu 1 292 -19 1251 263 18 27 chrY 5913853 5914478 -18798601 + BSR/Beta Satellite Satellite 251 1156 0 901 303 12 11 chrY 5914513 5915431 -18797648 + BSR/Beta Satellite Satellite 1 918 0 228 281 26 61 chrY 5915443 5915557 -18797522 + BSR/Beta Satellite Satellite 33 142 0 321 310 21 17 chrY 5915569 5915740 -18797339 + BSR/Beta Satellite Satellite 1 171 -44 2292 48 3 3 chrY 5915747 5916036 -18797043 - L1PA4 LINE L1 -3 6152 5864 367 276 78 17 chrY 5916046 5916293 -18796786 + BSR/Beta Satellite Satellite 1 262 -7 1154 271 9 5 chrY 5916469 5917220 -18795859 + BSR/Beta Satellite Satellite 1 753 -47 384 274 0 0 chrY 5917309 5917413 -18795666 + BSR/Beta Satellite Satellite 1 104 -62 549 277 28 19 chrY 5917446 5918329 -18794750 + BSR/Beta Satellite Satellite 1 890 0 1244 261 13 0 chrY 5918417 5918720 -18794359 + BSR/Beta Satellite Satellite 19 325 -54 537 293 7 12 chrY 5918815 5919486 -18793593 + BSR/Beta Satellite Satellite 1 667 -15 657 226 11 71 chrY 5919517 5919874 -18793205 + BSR/Beta Satellite Satellite 1 335 -2 1184 296 19 11 chrY 5920089 5920814 -18792265 + BSR/Beta Satellite Satellite 1 730 -17 1666 188 7 10 chrY 5920823 5921121 -18791958 + AluSq SINE Alu 1 297 -16 627 263 14 15 chrY 5921154 5921531 -18791548 + BSR/Beta Satellite Satellite 1 376 0 870 303 9 19 chrY 5921570 5921894 -18791185 + BSR/Beta Satellite Satellite 43 363 -16 729 326 7 0 chrY 5921914 5922202 -18790877 + BSR/Beta Satellite Satellite 5 294 -85 400 275 35 0 chrY 5922250 5922367 -18790712 + BSR/Beta Satellite Satellite 1 121 -44 529 265 18 21 chrY 5922430 5923525 -18789554 + BSR/Beta Satellite Satellite 1 1091 -46 962 277 14 14 chrY 5923590 5923868 -18789211 + BSR/Beta Satellite Satellite 21 298 -81 334 302 25 25 chrY 5923952 5924129 -18788950 + BSR/Beta Satellite Satellite 1 177 -15 642 260 16 33 chrY 5924408 5925032 -18788047 + BSR/Beta Satellite Satellite 1 613 -19 902 311 16 5 chrY 5925186 5925613 -18787466 + BSR/Beta Satellite Satellite 1 432 -49 403 260 13 27 chrY 5925676 5925843 -18787236 + BSR/Beta Satellite Satellite 1 164 -21 1560 268 68 12 chrY 5925849 5926863 -18786216 - L1M3 LINE L1 -702 5481 4414 1477 244 27 10 chrY 5926882 5927370 -18785709 + L1M3 LINE L1 3905 4400 -1746 1526 236 57 17 chrY 5927540 5927827 -18785252 + MER61B LTR ERV1 1 310 -115 207 0 0 0 chrY 5927827 5927850 -18785229 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1526 236 57 17 chrY 5927850 5927968 -18785111 + MER61B LTR ERV1 310 422 -3 527 140 61 35 chrY 5927979 5928093 -18784986 + MER61B-int LTR ERV1 14 130 -5087 2092 211 32 29 chrY 5928170 5928728 -18784351 + MER61B-int LTR ERV1 280 839 -4378 1407 160 11 0 chrY 5928729 5928991 -18784088 + MER61B-int LTR ERV1 944 1208 -4009 10011 158 25 13 chrY 5928998 5931051 -18782028 + MER61B-int LTR ERV1 1571 3522 -1695 4963 196 41 25 chrY 5931034 5932170 -18780909 + MER61B-int LTR ERV1 4060 5213 -4 * 2221 194 7 16 chrY 5932173 5932600 -18780479 + MER61B LTR ERV1 1 423 -2 283 298 133 0 chrY 5932609 5932797 -18780282 - L1 LINE L1 -1272 4874 4662 1344 234 4 0 chrY 5932839 5933100 -18779979 + AluJb SINE Alu 24 285 -27 232 286 60 43 chrY 5933283 5933468 -18779611 - L1 LINE L1 -3312 2834 2647 385 236 85 113 chrY 5933479 5933973 -18779106 - L1M4 LINE L1 -1308 3499 895 366 200 1 0 chrY 5934404 5934484 -18778595 - AluS SINE Alu -3 297 227 562 258 0 0 chrY 5934505 5934629 -18778450 - AluSq/x SINE Alu -180 133 10 1318 225 20 43 chrY 5935553 5935900 -18777179 - LTR32 LTR ERVL -21 450 112 23424 55 5 2 chrY 5935937 5939753 -18773326 - L1PA4 LINE L1 -2 6153 2327 1688 194 7 0 chrY 5939760 5940049 -18773030 - AluSp SINE Alu -22 291 1 306 276 38 48 chrY 5940062 5940167 -18772912 - LTR32 LTR ERVL -353 118 15 21 36 0 0 chrY 5940783 5940811 -18772268 + AT_rich Low_complexity Low_complexity 1 28 0 1905 167 6 13 chrY 5941425 5941737 -18771342 + AluY SINE Alu 1 310 -1 1539 183 38 7 chrY 5943689 5943979 -18769100 - AluSc SINE Alu -9 300 2 6356 246 174 2 chrY 5944019 5945728 -18767351 + L1PA12 LINE L1 1 2003 -5578 1314 305 24 0 chrY 5945734 5946111 -18766968 + L1PA13 LINE L1 347 732 -6055 1290 252 119 17 chrY 5946124 5946703 -18766376 + L1PA13 LINE L1 2517 3154 -3643 1907 177 3 0 chrY 5948461 5948771 -18764308 + AluSq SINE Alu 1 311 -2 236 167 0 56 chrY 5948833 5948887 -18764192 + L1M4c LINE L1 1545 1595 -5184 247 383 4 4 chrY 5949298 5949528 -18763551 + L1M4c LINE L1 1836 2065 -4785 2914 167 34 9 chrY 5949539 5950127 -18762952 - LTR10E LTR ERV1 -31 602 1 312 65 22 0 chrY 5950137 5950183 -18762896 + L1M4c LINE L1 2480 2526 -4323 602 277 86 69 chrY 5950208 5950835 -18762244 + L1M4c LINE L1 2910 3524 -3324 1463 221 7 3 chrY 5950835 5951134 -18761945 - AluSc SINE Alu -9 300 1 602 277 86 69 chrY 5951134 5951451 -18761628 + L1M4c LINE L1 3524 5534 -1314 1141 293 21 20 chrY 5951462 5952869 -18760210 + BSR/Beta Satellite Satellite 1 1408 -8 2983 30 0 8 chrY 5952869 5953231 -18759848 - L1P LINE L1 -934 5212 4854 5196 23 2 5 chrY 5953231 5953789 -18759290 + L1PA2 LINE L1 5582 6155 0 488 145 31 5 chrY 5953817 5953904 -18759175 + MLT1A1 LTR MaLR 243 319 -46 391 259 9 19 chrY 5953918 5954026 -18759053 + BSR/Beta Satellite Satellite 46 152 0 * 585 252 14 25 chrY 5953929 5954780 -18758299 + BSR/Beta Satellite Satellite 1 841 -43 859 246 28 19 chrY 5954913 5955124 -18757955 + BSR/Beta Satellite Satellite 21 233 -146 2071 135 56 5 chrY 5955126 5956871 -18756208 + L1PA7 LINE L1 4175 6153 -1 447 257 0 0 chrY 5956871 5956995 -18756084 + BSR/Beta Satellite Satellite 1 124 -47 490 273 24 22 chrY 5957048 5957887 -18755192 + BSR/Beta Satellite Satellite 1 840 -15 463 227 37 0 chrY 5957936 5958089 -18754990 + BSR/Beta Satellite Satellite 1 158 0 1198 260 20 10 chrY 5958186 5958486 -18754593 + BSR/Beta Satellite Satellite 28 330 -49 474 286 32 20 chrY 5958555 5958931 -18754148 + BSR/Beta Satellite Satellite 1 380 -25 586 256 22 27 chrY 5958999 5959281 -18753798 + BSR/Beta Satellite Satellite 1 280 -1 398 278 16 40 chrY 5959295 5959469 -18753610 + BSR/Beta Satellite Satellite 1 169 -29 1154 277 21 24 chrY 5959495 5959831 -18753248 + BSR/Beta Satellite Satellite 29 363 -16 797 338 6 6 chrY 5959855 5960175 -18752904 + BSR/Beta Satellite Satellite 9 328 -51 329 264 28 76 chrY 5960211 5960355 -18752724 + BSR/Beta Satellite Satellite 2 138 -4 422 262 36 24 chrY 5960371 5960601 -18752478 + BSR/Beta Satellite Satellite 1 232 -53 621 287 19 10 chrY 5960651 5961420 -18751659 + BSR/Beta Satellite Satellite 1 776 0 897 296 46 7 chrY 5961527 5961811 -18751268 + BSR/Beta Satellite Satellite 36 330 -49 539 306 11 24 chrY 5961848 5962259 -18750820 + BSR/Beta Satellite Satellite 1 405 -20 496 313 5 13 chrY 5962327 5963018 -18750061 + BSR/Beta Satellite Satellite 1 685 -21 354 333 28 7 chrY 5963175 5963316 -18749763 + BSR/Beta Satellite Satellite 3 146 -6 1217 275 40 8 chrY 5963407 5964208 -18748871 + BSR/Beta Satellite Satellite 1 826 -44 1292 306 8 4 chrY 5964280 5965057 -18748022 + BSR/Beta Satellite Satellite 1 779 -1 555 277 31 18 chrY 5965141 5966206 -18746873 + BSR/Beta Satellite Satellite 1 1079 -43 1049 324 4 6 chrY 5966340 5966700 -18746379 + BSR/Beta Satellite Satellite 1 359 -54 347 319 36 19 chrY 5966773 5966965 -18746114 + BSR/Beta Satellite Satellite 1 195 0 526 251 5 18 chrY 5967207 5967358 -18745721 + BSR/Beta Satellite Satellite 1 148 -52 1013 302 26 9 chrY 5967382 5967855 -18745224 + BSR/Beta Satellite Satellite 1 481 -21 614 281 27 20 chrY 5967947 5968963 -18744116 + BSR/Beta Satellite Satellite 1 1023 0 1282 282 19 0 chrY 5969053 5969398 -18743681 + BSR/Beta Satellite Satellite 1 351 -64 407 290 15 38 chrY 5969499 5969630 -18743449 + BSR/Beta Satellite Satellite 15 142 0 247 330 34 5 chrY 5969707 5969905 -18743174 + BSR/Beta Satellite Satellite 1 203 -11 620 325 10 12 chrY 5970021 5970985 -18742094 + BSR/Beta Satellite Satellite 1 961 -7 1156 286 26 19 chrY 5971006 5971877 -18741202 + BSR/Beta Satellite Satellite 1 876 -63 924 294 44 9 chrY 5971892 5972212 -18740867 + BSR/Beta Satellite Satellite 41 371 -8 1021 308 18 2 chrY 5972225 5972760 -18740319 + BSR/Beta Satellite Satellite 1 543 -40 602 230 27 46 chrY 5972809 5973603 -18739476 + BSR/Beta Satellite Satellite 1 778 -42 1089 296 17 28 chrY 5973680 5974073 -18739006 + BSR/Beta Satellite Satellite 1 397 -1192 2810 10 0 0 chrY 5974073 5974378 -18738701 - AluY SINE Alu -6 305 1 1089 296 17 28 chrY 5974378 5975245 -18737834 + BSR/Beta Satellite Satellite 397 1548 -41 1051 299 10 20 chrY 5975273 5976048 -18737031 + BSR/Beta Satellite Satellite 1 767 -35 603 278 21 27 chrY 5976119 5976845 -18736234 + BSR/Beta Satellite Satellite 1 721 -64 284 360 20 0 chrY 5976911 5977011 -18736068 + BSR/Beta Satellite Satellite 2 103 -49 484 274 0 0 chrY 5977107 5977220 -18735859 - BSR/Beta Satellite Satellite -14 128 16 475 242 33 39 chrY 5977233 5977386 -18735693 - BSR/Beta Satellite Satellite 0 152 1 792 280 6 0 chrY 5977399 5977694 -18735385 - BSR/Beta Satellite Satellite -44 296 1 625 293 20 25 chrY 5977820 5978577 -18734502 - BSR/Beta Satellite Satellite -1 753 1 371 309 0 40 chrY 5978604 5978730 -18734349 - BSR/Beta Satellite Satellite -5 137 17 423 165 139 0 chrY 5978733 5978812 -18734267 - AluSg/x SINE Alu -12 300 211 626 298 57 22 chrY 5978948 5979264 -18733815 - BSR/Beta Satellite Satellite -27 352 26 628 272 17 27 chrY 5979365 5980627 -18732452 - BSR/Beta Satellite Satellite -1 1249 1 1189 305 7 5 chrY 5980695 5981302 -18731777 - BSR/Beta Satellite Satellite -10 608 1 198 0 0 0 chrY 5981392 5981414 -18731665 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 27865 53 13 1 chrY 5981416 5985737 -18727342 - L1PA3 LINE L1 -9 6146 1776 392 319 0 0 chrY 5985740 5985856 -18727223 - BSR/Beta Satellite Satellite -14 128 13 5382 62 1 3 chrY 5985862 5986555 -18726524 + L1P LINE L1 1246 1937 -4209 1107 286 23 15 chrY 5986562 5987638 -18725441 - BSR/Beta Satellite Satellite -3 1084 1 486 288 20 34 chrY 5987798 5988515 -18724564 - BSR/Beta Satellite Satellite -1 706 1 505 310 15 25 chrY 5988573 5988939 -18724140 - BSR/Beta Satellite Satellite -4 362 1 758 320 40 0 chrY 5988997 5989275 -18723804 - BSR/Beta Satellite Satellite -50 329 41 582 285 30 12 chrY 5989385 5990351 -18722728 - BSR/Beta Satellite Satellite -2 983 1 1100 309 9 2 chrY 5990444 5990866 -18722213 - BSR/Beta Satellite Satellite -44 424 1 1252 259 22 12 chrY 5990886 5991206 -18721873 - BSR/Beta Satellite Satellite -16 363 41 1163 280 16 33 chrY 5991282 5992979 -18720100 - BSR/Beta Satellite Satellite -1 1668 1 577 255 24 25 chrY 5993014 5993392 -18719687 - BSR/Beta Satellite Satellite 0 622 10 1398 43 0 4 chrY 5993392 5993628 -18719451 + (TTC)n Simple_repeat Simple_repeat 1 235 0 1406 234 7 0 chrY 5993640 5993944 -18719135 - AluSg SINE Alu -2 308 3 889 299 38 12 chrY 5993953 5994432 -18718647 - BSR/Beta Satellite Satellite -44 491 1 323 380 21 0 chrY 5994528 5994670 -18718409 - BSR/Beta Satellite Satellite -7 145 1 477 264 38 25 chrY 5994814 5995187 -18717892 - BSR/Beta Satellite Satellite 0 377 1 507 267 11 32 chrY 5995206 5995423 -18717656 - BSR/Beta Satellite Satellite 0 212 1 281 358 22 0 chrY 5995470 5995607 -18717472 - BSR/Beta Satellite Satellite -2 140 1 1178 288 13 18 chrY 5995679 5996305 -18716774 - BSR/Beta Satellite Satellite -57 622 1 849 295 14 34 chrY 5996460 5998057 -18715022 - BSR/Beta Satellite Satellite -7 1564 1 637 271 14 25 chrY 5998221 5998804 -18714275 - BSR/Beta Satellite Satellite -3 576 1 1250 286 16 13 chrY 5999120 5999731 -18713348 - BSR/Beta Satellite Satellite -49 612 1 1091 288 11 27 chrY 5999859 6001408 -18711671 - BSR/Beta Satellite Satellite -44 1523 1 400 247 0 0 chrY 6001422 6001511 -18711568 - BSR/Beta Satellite Satellite -13 366 278 1771 170 7 3 chrY 6001520 6001814 -18711265 + AluY SINE Alu 1 295 -16 22 35 0 0 chrY 6001817 6001846 -18711233 + AT_rich Low_complexity Low_complexity 1 29 0 556 272 17 18 chrY 6001861 6002313 -18710766 - BSR/Beta Satellite Satellite 0 451 1 352 288 76 42 chrY 6002339 6002627 -18710452 - L1 LINE L1 -1332 4814 4517 684 194 16 8 chrY 6002644 6002773 -18710306 + AluSc SINE Alu 2 131 -178 5390 62 35 0 chrY 6002806 6003466 -18709613 - MER11D LTR ERVK 0 897 215 676 71 0 0 chrY 6003462 6003546 -18709533 - MER11D LTR ERVK -813 84 1 * 792 228 12 0 chrY 6003577 6003744 -18709335 + FRAM SINE Alu 1 40 0 331 297 62 0 chrY 6003748 6003893 -18709186 - L1 LINE L1 -3312 2834 2681 * 15132 78 8 17 chrY 6003890 6005997 -18707082 - L1P LINE L1 -1441 4705 2617 2666 239 82 36 chrY 6005994 6006932 -18706147 - L1PA13 LINE L1 -4396 2401 1417 * 333 415 34 8 chrY 6006955 6007220 -18705859 - L1PA13 LINE L1 -5529 1258 987 1412 306 76 4 chrY 6007307 6007767 -18705312 - L1PA13 LINE L1 -5956 831 339 * 5328 283 12 6 chrY 6007765 6009463 -18703616 - L1PA12 LINE L1 -5577 2004 20 28 0 0 0 chrY 6009483 6009511 -18703568 + AT_rich Low_complexity Low_complexity 1 28 0 22 56 0 0 chrY 6010091 6010127 -18702952 + AT_rich Low_complexity Low_complexity 1 36 0 1293 184 5 0 chrY 6010676 6010899 -18702180 + AluSq SINE Alu 4 227 -86 21 0 0 0 chrY 6011475 6011496 -18701583 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chrY 6011683 6011709 -18701370 + AT_rich Low_complexity Low_complexity 1 26 0 3539 132 4 6 chrY 6012883 6013392 -18699687 - MER9 LTR ERVK 0 511 4 1283 202 151 4 chrY 6014298 6014556 -18698523 + AluSp SINE Alu 1 296 -7 1479 227 20 40 chrY 6014560 6014913 -18698166 + LTR32 LTR ERVL 124 469 -2 3903 185 18 9 chrY 6015615 6016468 -18696611 - MER61-int LTR ERV1 -1061 3954 2349 582 301 29 43 chrY 6016470 6016746 -18696333 - BSR/Beta Satellite Satellite -81 298 27 584 280 8 22 chrY 6016838 6017916 -18695163 - BSR/Beta Satellite Satellite -1 1063 1 563 342 40 4 chrY 6017967 6018242 -18694837 - BSR/Beta Satellite Satellite -90 289 5 905 304 22 13 chrY 6018265 6018578 -18694501 - BSR/Beta Satellite Satellite -19 360 45 707 233 26 15 chrY 6018592 6018995 -18694084 - BSR/Beta Satellite Satellite -2 407 1 914 295 56 6 chrY 6019057 6019532 -18693547 - BSR/Beta Satellite Satellite 0 498 1 327 326 30 0 chrY 6019566 6019698 -18693381 - BSR/Beta Satellite Satellite -15 137 2 608 281 18 31 chrY 6019784 6020591 -18692488 - BSR/Beta Satellite Satellite 0 796 1 1311 277 14 16 chrY 6020674 6021372 -18691707 - BSR/Beta Satellite Satellite -49 696 1 537 281 24 21 chrY 6021467 6022550 -18690529 - BSR/Beta Satellite Satellite 0 1085 1 572 309 6 6 chrY 6022606 6022916 -18690163 - BSR/Beta Satellite Satellite -44 310 1 1065 298 16 2 chrY 6022939 6023288 -18689791 - BSR/Beta Satellite Satellite -5 353 1 652 236 19 61 chrY 6023315 6023897 -18689182 - BSR/Beta Satellite Satellite 0 557 1 517 297 4 0 chrY 6023910 6024074 -18689005 - BSR/Beta Satellite Satellite -3 164 1 1048 300 6 12 chrY 6024255 6024588 -18688491 - BSR/Beta Satellite Satellite -44 335 5 1093 250 36 32 chrY 6024604 6024912 -18688167 - BSR/Beta Satellite Satellite -13 366 58 469 255 45 34 chrY 6024945 6025316 -18687763 - BSR/Beta Satellite Satellite 0 374 1 1295 270 23 16 chrY 6025344 6025901 -18687178 - BSR/Beta Satellite Satellite -44 560 1 255 304 13 13 chrY 6026029 6026108 -18686971 - BSR/Beta Satellite Satellite -41 111 33 412 274 35 16 chrY 6026280 6026671 -18686408 - BSR/Beta Satellite Satellite -1 398 1 * 533 252 12 16 chrY 6026546 6026731 -18686348 - BSR/Beta Satellite Satellite 0 184 1 1037 259 36 19 chrY 6027032 6027726 -18685353 - BSR/Beta Satellite Satellite 0 705 1 452 288 20 16 chrY 6027771 6028007 -18685072 - BSR/Beta Satellite Satellite -2 236 1 1037 299 20 4 chrY 6028084 6028825 -18684254 - BSR/Beta Satellite Satellite -1 752 1 609 279 14 23 chrY 6028868 6029273 -18683806 - BSR/Beta Satellite Satellite -5 401 1 234 0 0 0 chrY 6029303 6029329 -18683750 + (TTA)n Simple_repeat Simple_repeat 2 27 0 14605 63 7 3 chrY 6029329 6031947 -18681132 - L1PA4 LINE L1 -22 6133 3509 1120 273 52 6 chrY 6033420 6033750 -18679329 - L1MB5 LINE L1 -13 6161 5817 1189 231 151 16 chrY 6033757 6034208 -18678871 - L1MB5 LINE L1 -415 5765 5254 272 312 16 24 chrY 6034234 6034359 -18678720 + L1M3d LINE L1 772 895 -5758 331 346 27 43 chrY 6034488 6034772 -18678307 + L1M3d LINE L1 372 659 -5994 1819 159 10 3 chrY 6034772 6035067 -18678012 - AluSx SINE Alu -15 297 1 331 346 27 43 chrY 6035067 6035111 -18677968 + L1M3d LINE L1 659 1436 -5217 226 305 48 72 chrY 6035141 6035308 -18677771 + L1M3de LINE L1 283 445 -6208 1573 227 39 53 chrY 6035399 6035830 -18677249 + MSTB LTR MaLR 1 425 -1 1570 189 0 23 chrY 6036058 6036359 -18676720 - AluSg SINE Alu -16 294 1 709 354 39 25 chrY 6036449 6036856 -18676223 + L1M3de LINE L1 438 850 -5813 378 61 0 0 chrY 6037836 6037885 -18675194 + (CA)n Simple_repeat Simple_repeat 2 50 0 211 50 75 0 chrY 6037887 6037927 -18675152 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 287 283 11 22 chrY 6037937 6038029 -18675050 - MLT1E LTR MaLR -118 475 385 282 338 115 20 chrY 6038172 6038320 -18674759 + AluSc SINE Alu 135 296 -3 1019 89 17 17 chrY 6038920 6039054 -18674025 + (TTTC)n Simple_repeat Simple_repeat 1 314 0 1019 89 17 17 chrY 6039054 6039234 -18673845 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 284 159 0 0 chrY 6039276 6039320 -18673759 + T-rich Low_complexity Low_complexity 1 44 0 1247 223 45 3 chrY 6039329 6039496 -18673583 - AluSx SINE Alu -9 303 118 375 41 0 0 chrY 6039496 6039545 -18673534 + (TG)n Simple_repeat Simple_repeat 2 50 0 1247 223 45 3 chrY 6039545 6039664 -18673415 - AluSx SINE Alu -194 118 5 1367 232 3 0 chrY 6039708 6040014 -18673065 - AluSx SINE Alu -1 311 5 279 280 64 24 chrY 6040486 6040611 -18672468 - MLT1F LTR MaLR -27 515 386 22 0 0 0 chrY 6041151 6041173 -18671906 + AT_rich Low_complexity Low_complexity 1 22 0 208 259 129 35 chrY 6043311 6043396 -18669683 + MIR3 SINE MIR 87 179 -29 809 78 0 0 chrY 6045797 6045900 -18667179 - L1P3 LINE L1 -622 5532 5430 2160 103 29 7 chrY 6045900 6046208 -18666871 + L1PA6 LINE L1 5837 6153 -1 408 246 59 0 chrY 6047476 6047594 -18665485 - L1MC3 LINE L1 -1571 6214 6090 362 298 80 72 chrY 6099272 6099732 -18613347 + SST1 Satellite centromeric 138 601 -962 302 200 44 0 chrY 6100584 6100674 -18612405 + (TG)n Simple_repeat Simple_repeat 1 94 0 252 0 0 0 chrY 6100807 6100835 -18612244 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 276 30 0 0 chrY 6100909 6100942 -18612137 + (A)n Simple_repeat Simple_repeat 1 33 0 1719 236 17 12 chrY 6101380 6101786 -18611293 + LTR2 LTR ERV1 42 449 0 9778 193 29 19 chrY 6101786 6104066 -18609013 + Harlequin LTR ERV1 1 2384 -5429 * 10979 173 2 25 chrY 6104045 6105937 -18607142 + Harlequin LTR ERV1 2497 4344 -3469 3595 42 2 37 chrY 6105939 6106628 -18606451 - L1P1 LINE L1 -430 5725 5070 3879 49 0 0 chrY 6106628 6107095 -18605984 + L1PA2 LINE L1 5685 6154 -1 16214 229 7 5 chrY 6107100 6110471 -18602608 + Harlequin LTR ERV1 4350 7811 -2 1496 246 57 24 chrY 6110471 6110672 -18602407 + LTR2 LTR ERV1 1 194 -255 351 0 0 0 chrY 6110672 6110711 -18602368 + (TTCTG)n Simple_repeat Simple_repeat 2 40 0 1496 246 57 24 chrY 6110711 6110932 -18602147 + LTR2 LTR ERV1 194 437 -12 417 314 65 57 chrY 6111192 6111651 -18601428 + SST1 Satellite centromeric 132 594 -969 195 69 0 0 chrY 6112595 6112624 -18600455 + (TG)n Simple_repeat Simple_repeat 2 30 0 318 324 67 57 chrY 6113668 6114128 -18598951 + SST1 Satellite centromeric 138 602 -961 183 217 0 0 chrY 6115033 6115093 -18597986 + (TG)n Simple_repeat Simple_repeat 1 60 0 270 106 0 0 chrY 6117538 6117585 -18595494 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 281 39 0 77 chrY 6119939 6119991 -18593088 + (TG)n Simple_repeat Simple_repeat 1 48 0 296 241 12 0 chrY 6121410 6121493 -18591586 + (TG)n Simple_repeat Simple_repeat 1 84 0 24 0 0 0 chrY 6121990 6122014 -18591065 + AT_rich Low_complexity Low_complexity 1 24 0 388 303 72 55 chrY 6122554 6123009 -18590070 + SST1 Satellite centromeric 138 600 -963 600 14 0 0 chrY 6124013 6124082 -18588997 + (TTC)n Simple_repeat Simple_repeat 2 70 0 283 298 71 58 chrY 6125154 6125449 -18587630 + SST1 Satellite centromeric 207 505 -1058 216 0 0 0 chrY 6126579 6126603 -18586476 + (A)n Simple_repeat Simple_repeat 1 24 0 397 297 108 61 chrY 6127409 6127853 -18585226 + SST1 Satellite centromeric 137 601 -962 230 276 0 0 chrY 6128345 6128403 -18584676 + SST1 Satellite centromeric 1163 1220 -343 195 69 0 0 chrY 6128782 6128811 -18584268 + (TG)n Simple_repeat Simple_repeat 1 29 0 264 332 64 62 chrY 6130357 6130730 -18582349 + SST1 Satellite centromeric 1165 1538 -25 180 77 0 0 chrY 6130789 6130815 -18582264 + (TG)n Simple_repeat Simple_repeat 1 26 0 274 320 70 59 chrY 6131813 6132341 -18580738 + SST1 Satellite centromeric 62 595 -968 252 59 0 0 chrY 6133281 6133315 -18579764 + (TG)n Simple_repeat Simple_repeat 1 34 0 372 299 59 67 chrY 6134462 6134850 -18578229 + SST1 Satellite centromeric 227 611 -952 243 240 13 0 chrY 6139988 6140063 -18573016 + (TG)n Simple_repeat Simple_repeat 1 76 0 328 313 76 47 chrY 6141190 6141573 -18571506 + SST1 Satellite centromeric 207 600 -963 336 316 84 71 chrY 6142060 6142452 -18570627 + SST1 Satellite centromeric 1163 1559 -4 212 0 36 0 chrY 6142742 6142770 -18570309 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 234 250 12 12 chrY 6144442 6144526 -18568553 + (TG)n Simple_repeat Simple_repeat 1 84 0 257 339 59 51 chrY 6145668 6146043 -18567036 + SST1 Satellite centromeric 224 601 -962 303 113 0 0 chrY 6146973 6147026 -18566053 + (TG)n Simple_repeat Simple_repeat 2 54 0 295 289 0 0 chrY 6149031 6149107 -18563972 + SST1 Satellite centromeric 1163 1238 -325 249 167 0 0 chrY 6149732 6149786 -18563293 + A-rich Low_complexity Low_complexity 1 54 0 233 321 44 44 chrY 6150780 6151029 -18562050 + SST1 Satellite centromeric 352 600 -963 269 94 0 62 chrY 6151942 6152006 -18561073 + (TG)n Simple_repeat Simple_repeat 1 60 0 236 213 27 0 chrY 6154373 6154448 -18558631 + (TG)n Simple_repeat Simple_repeat 1 77 0 208 279 0 0 chrY 6156833 6156901 -18556178 + (TG)n Simple_repeat Simple_repeat 1 68 0 321 26 0 0 chrY 6156939 6156977 -18556102 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 234 0 0 0 chrY 6159611 6159637 -18553442 + (A)n Simple_repeat Simple_repeat 1 26 0 237 294 32 40 chrY 6160472 6160598 -18552481 + SST1 Satellite centromeric 138 262 -1301 264 130 0 0 chrY 6161863 6161909 -18551170 + (TG)n Simple_repeat Simple_repeat 1 46 0 264 314 72 55 chrY 6162658 6163005 -18550074 + SST1 Satellite centromeric 138 490 -1073 309 278 76 28 chrY 6163271 6163415 -18549664 + SST1 Satellite centromeric 1386 1536 -27 419 35 18 0 chrY 6163464 6163521 -18549558 + (TG)n Simple_repeat Simple_repeat 1 58 0 423 0 0 0 chrY 6163741 6163788 -18549291 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 245 264 47 62 chrY 6164247 6164440 -18548639 + SST1 Satellite centromeric 412 601 -962 240 342 13 0 chrY 6164945 6165024 -18548055 + SST1 Satellite centromeric 1148 1227 -336 198 0 0 0 chrY 6165368 6165390 -18547689 + (TG)n Simple_repeat Simple_repeat 1 22 0 216 0 0 0 chrY 6165612 6165636 -18547443 + (A)n Simple_repeat Simple_repeat 1 24 0 264 313 81 63 chrY 6166487 6166944 -18546135 + SST1 Satellite centromeric 138 602 -961 279 295 0 0 chrY 6167435 6167513 -18545566 + SST1 Satellite centromeric 1162 1239 -324 234 178 41 14 chrY 6167812 6167885 -18545194 + (TG)n Simple_repeat Simple_repeat 2 76 0 198 0 0 0 chrY 6168096 6168118 -18544961 + (A)n Simple_repeat Simple_repeat 1 22 0 180 167 0 0 chrY 6168764 6168812 -18544267 + (TG)n Simple_repeat Simple_repeat 1 48 0 241 313 30 30 chrY 6169864 6169995 -18543084 + SST1 Satellite centromeric 132 262 -1301 216 259 12 12 chrY 6171197 6171282 -18541797 + (TG)n Simple_repeat Simple_repeat 2 86 0 561 326 57 42 chrY 6172241 6172806 -18540273 + SST1 Satellite centromeric 29 601 -962 185 153 0 17 chrY 6173705 6173764 -18539315 + (TG)n Simple_repeat Simple_repeat 2 59 0 2346 65 3 0 chrY 6176938 6177245 -18535834 - AluY SINE Alu -3 308 1 21 0 0 0 chrY 6177474 6177495 -18535584 + AT_rich Low_complexity Low_complexity 1 21 0 415 297 62 56 chrY 6177596 6177916 -18535163 + SST1 Satellite centromeric 314 635 -928 724 12 105 0 chrY 6178580 6178742 -18534337 + (TA)n Simple_repeat Simple_repeat 2 180 0 309 247 41 55 chrY 6178753 6178899 -18534180 + L1MCa LINE L1 1948 2091 -4335 * 333 219 65 116 chrY 6178783 6179075 -18534004 - L1MC5 LINE L1 -209 7752 7476 489 319 46 40 chrY 6180390 6180763 -18532316 + SST1 Satellite centromeric 227 601 -962 257 235 24 0 chrY 6184096 6184181 -18528898 + (TG)n Simple_repeat Simple_repeat 2 88 0 195 152 0 0 chrY 6186595 6186641 -18526438 + (TG)n Simple_repeat Simple_repeat 1 46 0 212 241 0 0 chrY 6188948 6189002 -18524077 + (TG)n Simple_repeat Simple_repeat 1 54 0 224 137 20 0 chrY 6190640 6190691 -18522388 + (TG)n Simple_repeat Simple_repeat 1 52 0 234 265 42 54 chrY 6191691 6191857 -18521222 + SST1 Satellite centromeric 111 274 -1289 248 271 21 0 chrY 6193053 6193149 -18519930 + (TG)n Simple_repeat Simple_repeat 1 98 0 451 342 50 25 chrY 6194091 6194650 -18518429 + SST1 Satellite centromeric 29 601 -962 279 130 0 0 chrY 6195545 6195599 -18517480 + (TG)n Simple_repeat Simple_repeat 1 54 0 226 230 0 14 chrY 6196343 6196417 -18516662 + (TG)n Simple_repeat Simple_repeat 1 73 0 189 107 0 0 chrY 6196458 6196486 -18516593 + (T)n Simple_repeat Simple_repeat 1 28 0 476 294 61 56 chrY 6197482 6197944 -18515135 + SST1 Satellite centromeric 138 601 -962 237 238 24 0 chrY 6198856 6198940 -18514139 + (TG)n Simple_repeat Simple_repeat 1 86 0 1148 84 4 14 chrY 6198978 6199267 -18513812 + (TTC)n Simple_repeat Simple_repeat 1 285 0 180 0 0 0 chrY 6199339 6199359 -18513720 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 412 287 65 67 chrY 6200363 6200750 -18512329 + SST1 Satellite centromeric 227 612 -951 354 74 0 0 chrY 6201648 6201702 -18511377 + (TG)n Simple_repeat Simple_repeat 1 54 0 233 303 37 46 chrY 6203693 6203802 -18509277 + SST1 Satellite centromeric 1132 1239 -324 211 265 20 0 chrY 6203997 6204095 -18508984 + (TG)n Simple_repeat Simple_repeat 1 100 0 314 309 65 52 chrY 6205255 6205624 -18507455 + SST1 Satellite centromeric 227 600 -963 201 154 0 0 chrY 6206124 6206163 -18506916 + (TG)n Simple_repeat Simple_repeat 2 40 0 248 309 48 39 chrY 6207459 6207689 -18505390 + SST1 Satellite centromeric 370 601 -962 22 0 0 0 chrY 6208839 6208861 -18504218 + AT_rich Low_complexity Low_complexity 1 22 0 381 315 55 39 chrY 6209708 6210165 -18502914 + SST1 Satellite centromeric 138 601 -962 184 75 25 25 chrY 6211074 6211114 -18501965 + (TG)n Simple_repeat Simple_repeat 1 40 0 1702 244 13 33 chrY 6211723 6212181 -18500898 + LTR2 LTR ERV1 1 449 0 6954 193 47 13 chrY 6212181 6213854 -18499225 + Harlequin LTR ERV1 1 1806 -6007 * 20908 221 6 9 chrY 6213853 6217992 -18495087 + HERVE LTR ERV1 3681 7808 -5 1745 230 36 25 chrY 6217995 6218439 -18494640 + LTR2 LTR ERV1 1 449 0 270 303 68 64 chrY 6219122 6219373 -18493706 + SST1 Satellite centromeric 349 600 -963 240 268 24 0 chrY 6220217 6220299 -18492780 + (TG)n Simple_repeat Simple_repeat 1 84 0 249 108 0 0 chrY 6220495 6220532 -18492547 + (A)n Simple_repeat Simple_repeat 1 37 0 287 24 0 24 chrY 6220557 6220598 -18492481 + (CA)n Simple_repeat Simple_repeat 1 40 0 198 103 0 0 chrY 6221699 6221728 -18491351 + (TTTTC)n Simple_repeat Simple_repeat 1 29 0 1679 159 0 17 chrY 6222660 6223023 -18490056 - AluY SINE Alu 0 358 1 238 254 58 72 chrY 6223107 6223245 -18489834 + SST1 Satellite centromeric 131 266 -1297 248 224 0 0 chrY 6224482 6224540 -18488539 + (TG)n Simple_repeat Simple_repeat 1 58 0 280 312 78 73 chrY 6225384 6225781 -18487298 + SST1 Satellite centromeric 1132 1530 -33 390 279 64 54 chrY 6226977 6227368 -18485711 + SST1 Satellite centromeric 207 601 -962 237 98 0 0 chrY 6228266 6228307 -18484772 + (TG)n Simple_repeat Simple_repeat 1 41 0 264 290 77 82 chrY 6229376 6229842 -18483237 + SST1 Satellite centromeric 138 601 -962 226 340 78 7 chrY 6230564 6230705 -18482374 + SST1 Satellite centromeric 1386 1536 -27 303 49 0 0 chrY 6230780 6230821 -18482258 + (TG)n Simple_repeat Simple_repeat 2 42 0 273 57 0 0 chrY 6232578 6232613 -18480466 + (TG)n Simple_repeat Simple_repeat 2 36 0 180 77 0 0 chrY 6232662 6232688 -18480391 + (T)n Simple_repeat Simple_repeat 1 26 0 279 0 0 0 chrY 6232888 6232919 -18480160 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 216 86 0 0 chrY 6235097 6235132 -18477947 + (TG)n Simple_repeat Simple_repeat 2 36 0 250 312 96 25 chrY 6237357 6237514 -18475565 + SST1 Satellite centromeric 1373 1540 -23 273 145 0 0 chrY 6237547 6237609 -18475470 + (TG)n Simple_repeat Simple_repeat 1 62 0 22 0 0 0 chrY 6237662 6237684 -18475395 + AT_rich Low_complexity Low_complexity 1 22 0 207 0 0 0 chrY 6237808 6237831 -18475248 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 269 337 55 41 chrY 6238638 6239127 -18473952 + SST1 Satellite centromeric 105 600 -963 202 71 24 24 chrY 6240019 6240061 -18473018 + (TG)n Simple_repeat Simple_repeat 1 42 0 231 265 41 68 chrY 6241106 6241253 -18471826 + SST1 Satellite centromeric 132 274 -1289 278 247 21 0 chrY 6241975 6242072 -18471007 + (CA)n Simple_repeat Simple_repeat 2 100 0 252 0 0 0 chrY 6244064 6244092 -18468987 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 284 306 35 40 chrY 6245221 6245394 -18467685 - SST1 Satellite centromeric -962 601 430 207 0 0 0 chrY 6246497 6246520 -18466559 + (T)n Simple_repeat Simple_repeat 1 23 0 220 186 0 0 chrY 6246722 6246765 -18466314 + (CA)n Simple_repeat Simple_repeat 2 44 0 328 323 52 39 chrY 6246834 6247240 -18465839 - SST1 Satellite centromeric -962 601 191 198 0 0 0 chrY 6248121 6248143 -18464936 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 209 196 0 0 chrY 6248368 6248414 -18464665 + (CA)n Simple_repeat Simple_repeat 1 46 0 180 97 0 0 chrY 6250836 6250867 -18462212 + (CA)n Simple_repeat Simple_repeat 2 32 0 307 277 89 75 chrY 6251793 6252085 -18460994 - SST1 Satellite centromeric -1039 524 229 270 0 0 0 chrY 6253010 6253040 -18460039 + (TTTTTG)n Simple_repeat Simple_repeat 1 30 0 280 253 10 10 chrY 6253236 6253335 -18459744 + (CA)n Simple_repeat Simple_repeat 1 99 0 1700 152 0 3 chrY 6253439 6253771 -18459308 - AluY SINE Alu 0 331 1 1205 7 0 0 chrY 6253778 6253913 -18459166 - AluYa5 SINE Alu -13 298 164 291 242 0 0 chrY 6254129 6254191 -18458888 - SST1 Satellite centromeric -339 1224 1163 225 250 24 0 chrY 6256211 6256295 -18456784 + (CA)n Simple_repeat Simple_repeat 1 86 0 244 276 109 63 chrY 6256854 6257028 -18456051 - SST1 Satellite centromeric -226 1337 1156 241 333 56 52 chrY 6257518 6257770 -18455309 - SST1 Satellite centromeric -962 601 349 203 83 0 83 chrY 6259059 6259107 -18453972 + (CA)n Simple_repeat Simple_repeat 1 44 0 207 152 0 0 chrY 6260403 6260449 -18452630 + (CA)n Simple_repeat Simple_repeat 1 46 0 189 0 0 0 chrY 6261210 6261231 -18451848 + (T)n Simple_repeat Simple_repeat 1 21 0 182 104 0 83 chrY 6261441 6261489 -18451590 + (CA)n Simple_repeat Simple_repeat 1 44 0 265 311 9 9 chrY 6261568 6261674 -18451405 - SST1 Satellite centromeric -71 1492 1387 411 311 52 59 chrY 6262247 6262536 -18450543 - SST1 Satellite centromeric -963 600 314 241 250 26 0 chrY 6263757 6263833 -18449246 + (CA)n Simple_repeat Simple_repeat 2 79 0 300 161 0 0 chrY 6265870 6265951 -18447128 + T-rich Low_complexity Low_complexity 1 81 0 208 279 0 0 chrY 6266145 6266206 -18446873 + (CA)n Simple_repeat Simple_repeat 2 62 0 275 329 77 64 chrY 6266230 6266622 -18446457 - SST1 Satellite centromeric -11 1552 1156 240 328 42 72 chrY 6267110 6267375 -18445704 - SST1 Satellite centromeric -963 600 344 194 0 39 0 chrY 6268433 6268459 -18444620 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 286 321 59 63 chrY 6269593 6269880 -18443199 - SST1 Satellite centromeric -962 601 316 223 48 24 24 chrY 6270893 6270935 -18442144 + (TTG)n Simple_repeat Simple_repeat 2 43 0 189 0 0 0 chrY 6271191 6271212 -18441867 + (CA)n Simple_repeat Simple_repeat 1 21 0 394 323 51 36 chrY 6272116 6272506 -18440573 - SST1 Satellite centromeric -961 602 207 252 0 0 0 chrY 6273420 6273448 -18439631 + (T)n Simple_repeat Simple_repeat 1 28 0 226 316 0 25 chrY 6274037 6274116 -18438963 - SST1 Satellite centromeric -325 1238 1162 257 0 30 0 chrY 6275566 6275599 -18437480 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 203 47 70 47 chrY 6275892 6275935 -18437144 + T-rich Low_complexity Low_complexity 2 45 0 201 94 0 0 chrY 6276105 6276137 -18436942 + (CA)n Simple_repeat Simple_repeat 1 32 0 229 255 0 0 chrY 6276415 6276462 -18436617 - SST1 Satellite centromeric -354 1209 1163 281 280 92 74 chrY 6276935 6277392 -18435687 - SST1 Satellite centromeric -962 601 137 683 254 12 48 chrY 6277888 6278220 -18434859 + LTR2 LTR ERV1 1 420 -29 231 36 0 0 chrY 6278220 6278248 -18434831 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 2003 230 5 0 chrY 6278270 6278652 -18434427 + Harlequin LTR ERV1 1 384 -6512 452 137 8 18 chrY 6278739 6278866 -18434213 + Harlequin LTR ERV1 525 683 -6213 6029 195 40 7 chrY 6279307 6281824 -18431255 + Harlequin LTR ERV1 658 3376 -4437 6710 200 16 6 chrY 6281825 6283405 -18429674 + Harlequin LTR ERV1 4375 6005 -1808 388 350 0 0 chrY 6283407 6283530 -18429549 + Harlequin LTR ERV1 6383 6505 -1308 721 214 0 0 chrY 6283558 6283689 -18429390 + Harlequin LTR ERV1 6765 6895 -1 708 264 3 36 chrY 6283689 6284050 -18429029 + LTR2 LTR ERV1 1 449 0 227 342 0 0 chrY 6285000 6285079 -18428000 - SST1 Satellite centromeric -322 1241 1163 294 308 80 47 chrY 6285616 6285892 -18427187 - SST1 Satellite centromeric -1072 491 207 245 42 0 83 chrY 6287018 6287066 -18426013 + (CA)n Simple_repeat Simple_repeat 1 44 0 265 294 68 20 chrY 6287111 6287257 -18425822 - SST1 Satellite centromeric -25 1538 1386 206 197 45 0 chrY 6289395 6289461 -18423618 + (CA)n Simple_repeat Simple_repeat 1 69 0 227 341 12 12 chrY 6289796 6289881 -18423198 - SST1 Satellite centromeric -344 1219 1135 227 324 77 50 chrY 6290339 6290821 -18422258 - SST1 Satellite centromeric -962 601 107 204 135 0 0 chrY 6291846 6291883 -18421196 + (CA)n Simple_repeat Simple_repeat 2 38 0 286 320 10 10 chrY 6292240 6292337 -18420742 - SST1 Satellite centromeric -335 1228 1132 315 299 23 40 chrY 6293119 6293293 -18419786 - SST1 Satellite centromeric -1289 274 104 216 143 0 0 chrY 6295182 6295224 -18417855 + (CA)n Simple_repeat Simple_repeat 1 42 0 252 246 0 46 chrY 6295601 6295666 -18417413 - SST1 Satellite centromeric -346 1217 1156 280 321 59 56 chrY 6296153 6296440 -18416639 - SST1 Satellite centromeric -962 601 314 249 33 0 0 chrY 6297456 6297486 -18415593 + (T)n Simple_repeat Simple_repeat 1 30 0 287 270 125 40 chrY 6297806 6297958 -18415121 - SST1 Satellite centromeric -25 1538 1374 458 315 61 52 chrY 6298679 6299139 -18413940 - SST1 Satellite centromeric -962 601 138 301 318 66 42 chrY 6300546 6300832 -18412247 - SST1 Satellite centromeric -1081 482 190 328 315 61 51 chrY 6302798 6303189 -18409890 - SST1 Satellite centromeric -962 601 207 195 129 0 0 chrY 6304053 6304084 -18408995 + (T)n Simple_repeat Simple_repeat 1 31 0 264 91 0 0 chrY 6304341 6304385 -18408694 + (CA)n Simple_repeat Simple_repeat 1 44 0 375 323 49 36 chrY 6307894 6308284 -18404795 - SST1 Satellite centromeric -962 601 207 192 111 0 0 chrY 6309412 6309448 -18403631 + (CA)n Simple_repeat Simple_repeat 1 36 0 230 305 62 51 chrY 6311645 6311822 -18401257 - SST1 Satellite centromeric -1165 398 220 192 40 0 0 chrY 6312745 6312770 -18400309 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 216 253 13 0 chrY 6312970 6313045 -18400034 + (CA)n Simple_repeat Simple_repeat 1 76 0 276 247 21 0 chrY 6314002 6314099 -18398980 + (CA)n Simple_repeat Simple_repeat 2 100 0 273 29 0 0 chrY 6316460 6316494 -18396585 + (CA)n Simple_repeat Simple_repeat 1 34 0 228 275 33 33 chrY 6316854 6316945 -18396134 - SST1 Satellite centromeric -325 1238 1148 291 28 0 0 chrY 6318347 6318383 -18394696 + (TG)n Simple_repeat Simple_repeat 1 36 0 246 32 0 0 chrY 6319663 6319694 -18393385 + (CA)n Simple_repeat Simple_repeat 2 32 0 236 268 42 0 chrY 6320803 6320874 -18392205 - SST1 Satellite centromeric -334 1229 1156 207 0 0 0 chrY 6322142 6322165 -18390914 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 237 236 22 11 chrY 6323490 6323579 -18389500 + (CA)n Simple_repeat Simple_repeat 1 90 0 349 287 65 53 chrY 6324442 6324689 -18388390 - SST1 Satellite centromeric -962 601 352 215 24 0 98 chrY 6325887 6325928 -18387151 + (CA)n Simple_repeat Simple_repeat 1 37 0 471 277 80 72 chrY 6326843 6327233 -18385846 - SST1 Satellite centromeric -962 601 209 249 108 0 0 chrY 6328836 6328873 -18384206 + (T)n Simple_repeat Simple_repeat 1 37 0 268 202 24 12 chrY 6329398 6329482 -18383597 + (CA)n Simple_repeat Simple_repeat 2 86 0 242 309 0 0 chrY 6329793 6329861 -18383218 - SST1 Satellite centromeric -334 1229 1162 227 160 40 40 chrY 6330655 6330705 -18382374 - SST1 Satellite centromeric -1285 278 229 420 20 0 0 chrY 6331841 6331890 -18381189 + (CA)n Simple_repeat Simple_repeat 2 50 0 259 280 78 102 chrY 6331993 6332325 -18380754 - SST1 Satellite centromeric -77 1486 1163 258 293 68 78 chrY 6332823 6333222 -18379857 - SST1 Satellite centromeric -962 601 207 227 338 0 0 chrY 6334736 6334804 -18378275 - SST1 Satellite centromeric -334 1229 1162 248 349 39 35 chrY 6335272 6335527 -18377552 - SST1 Satellite centromeric -964 599 344 225 200 17 0 chrY 6336457 6336517 -18376562 + (CA)n Simple_repeat Simple_repeat 2 62 0 271 348 50 35 chrY 6337441 6337904 -18375175 - SST1 Satellite centromeric -962 601 132 211 270 22 0 chrY 6338850 6338939 -18374140 + (CA)n Simple_repeat Simple_repeat 2 92 0 353 322 61 47 chrY 6339894 6340319 -18372760 - SST1 Satellite centromeric -1039 524 94 2543 151 42 150 chrY 6341203 6341965 -18371114 - LTR1 LTR ERV1 -104 681 2 334 172 0 0 chrY 6341974 6342032 -18371047 - L1MC4 LINE L1 -1375 6667 6610 25 31 0 0 chrY 6343180 6343212 -18369867 + AT_rich Low_complexity Low_complexity 1 32 0 377 264 11 0 chrY 6343215 6343302 -18369777 - FRAM SINE Alu -10 156 69 23 0 0 0 chrY 6343335 6343358 -18369721 + AT_rich Low_complexity Low_complexity 1 23 0 319 313 17 9 chrY 6343358 6343473 -18369606 - FLAM_C SINE Alu -7 126 11 261 0 0 0 chrY 6345636 6345665 -18367414 + (TA)n Simple_repeat Simple_repeat 2 30 0 280 274 103 17 chrY 6346499 6346616 -18366463 + MLT1F LTR MaLR 389 515 -27 1124 217 34 24 chrY 6346785 6347080 -18365999 + AluSx SINE Alu 1 298 -4 1264 203 0 48 chrY 6347135 6347430 -18365649 + AluSx SINE Alu 12 292 -20 969 120 11 11 chrY 6347448 6347623 -18365456 + (GAAA)n Simple_repeat Simple_repeat 4 178 0 270 125 0 0 chrY 6347624 6347672 -18365407 + (GGAA)n Simple_repeat Simple_repeat 1 48 0 347 259 14 119 chrY 6348286 6348429 -18364650 - FLAM_C SINE Alu -5 128 1 287 273 11 23 chrY 6348569 6348657 -18364422 + MLT1E LTR MaLR 385 471 -122 197 119 24 0 chrY 6348661 6348703 -18364376 + (TG)n Simple_repeat Simple_repeat 2 44 0 595 369 44 20 chrY 6349669 6350127 -18362952 - L1M3b LINE L1 -5771 510 42 265 281 143 71 chrY 6350156 6350201 -18362878 - L1M3de LINE L1 -5750 903 863 1510 197 0 14 chrY 6350201 6350480 -18362599 + AluSc SINE Alu 14 288 -21 265 281 143 71 chrY 6350480 6350672 -18362407 - L1M3de LINE L1 -5790 863 649 1335 244 35 45 chrY 6350683 6351109 -18361970 - MSTB LTR MaLR -4 422 1 1762 174 13 3 chrY 6351441 6351745 -18361334 + AluSx SINE Alu 1 307 -5 358 344 23 20 chrY 6351785 6352028 -18361051 - L1M3de LINE L1 -5217 1436 604 22 35 0 0 chrY 6352272 6352301 -18360778 + AT_rich Low_complexity Low_complexity 1 29 0 253 220 0 0 chrY 6352301 6352360 -18360719 - L1MA4 LINE L1 -10 6290 6232 488 238 36 42 chrY 6352406 6352539 -18360540 + L1MA4 LINE L1 6039 6172 -128 1089 240 52 14 chrY 6352539 6352827 -18360252 + AluJo SINE Alu 2 300 -2 488 238 36 42 chrY 6352827 6352861 -18360218 + L1MA4 LINE L1 6172 6205 -95 1495 193 3 21 chrY 6352892 6353182 -18359897 - AluSx SINE Alu -25 287 3 1134 211 41 15 chrY 6353380 6353646 -18359433 + AluSg SINE Alu 15 287 -23 1600 189 3 0 chrY 6355186 6355488 -18357591 + L1MB1 LINE L1 5865 6167 -1 23 0 0 0 chrY 6355809 6355832 -18357247 + AT_rich Low_complexity Low_complexity 1 23 0 387 60 0 0 chrY 6355898 6355948 -18357131 + (TAA)n Simple_repeat Simple_repeat 2 51 0 21 0 0 0 chrY 6356084 6356105 -18356974 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chrY 6356232 6356254 -18356825 + AT_rich Low_complexity Low_complexity 1 22 0 1611 155 35 21 chrY 6356300 6356577 -18356502 + AluSg SINE Alu 1 284 -26 196 42 0 0 chrY 6356577 6356601 -18356478 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 4778 210 30 15 chrY 6357612 6359522 -18353557 + L1PA16 LINE L1 3990 5924 -242 451 263 0 8 chrY 6359522 6359640 -18353439 + L1P LINE L1 4845 4961 -1185 270 207 0 0 chrY 6359637 6359695 -18353384 - L1PA16 LINE L1 -169 5997 5940 * 1018 195 10 5 chrY 6359710 6359905 -18353174 + L1PA16 LINE L1 5935 6130 -36 26 0 0 0 chrY 6359969 6359995 -18353084 + AT_rich Low_complexity Low_complexity 1 26 0 522 341 110 60 chrY 6360586 6360889 -18352190 - L2 LINE L2 -35 3237 2951 1996 134 0 17 chrY 6360889 6361187 -18351892 + AluSc SINE Alu 1 293 -16 522 341 110 60 chrY 6361187 6361576 -18351503 - L2 LINE L2 -321 2951 2517 890 61 0 0 chrY 6362211 6362325 -18350754 + L1PA4 LINE L1 6038 6151 -4 1472 153 42 0 chrY 6363103 6363339 -18349740 - AluSq SINE Alu -27 286 41 2846 264 41 94 chrY 6363537 6364187 -18348892 - L2 LINE L2 -214 3099 2474 866 0 0 0 chrY 6364187 6364283 -18348796 - AluYa5/8 SINE Alu -5 306 211 2846 264 41 94 chrY 6364283 6364967 -18348112 - L2 LINE L2 -839 2474 1755 1003 333 85 43 chrY 6365013 6365754 -18347325 - L2 LINE L2 -2325 989 218 4779 186 25 12 chrY 6365853 6366852 -18346227 - L1PA16 LINE L1 -11 6155 5144 2904 107 23 7 chrY 6366852 6367293 -18345786 + LTR7 LTR ERV1 1 448 -2 4779 186 25 12 chrY 6367293 6367533 -18345546 - L1PA16 LINE L1 -1022 5144 4909 750 265 33 23 chrY 6367628 6367843 -18345236 + MER58A DNA MER1_type 2 218 -6 217 326 11 34 chrY 6367912 6368001 -18345078 - MER5B DNA MER1_type -67 111 25 1973 196 61 25 chrY 6368522 6368965 -18344114 + LTR2B LTR ERV1 32 490 0 39800 216 10 8 chrY 6368965 6376765 -18336314 + HERVE LTR ERV1 1 7812 -1 1762 227 61 20 chrY 6376784 6377225 -18335854 + LTR2B LTR ERV1 32 490 0 202 273 18 0 chrY 6378092 6378147 -18334932 - MIR SINE MIR -66 142 87 545 345 72 5 chrY 6379244 6379453 -18333626 + MIR SINE MIR 36 258 -4 193 318 0 0 chrY 6379543 6379587 -18333492 + L2 LINE L2 3210 3253 -19 502 352 28 28 chrY 6380110 6380397 -18332682 - L3 LINE CR1 -78 1499 1213 1349 240 17 40 chrY 6380588 6380938 -18332141 - MLT1A1 LTR MaLR 0 365 24 2601 222 63 9 chrY 6381659 6382232 -18330847 - MER90 LTR ERV1 -10 604 1 409 280 93 90 chrY 6382258 6382526 -18330553 - L2 LINE L2 -65 3248 2980 247 270 112 66 chrY 6383585 6383737 -18329342 - MIR SINE MIR -56 206 48 287 304 114 43 chrY 6383799 6383983 -18329096 + MIR SINE MIR 66 262 0 313 325 25 8 chrY 6384011 6384131 -18328948 + MIR SINE MIR 124 245 -17 21 57 0 0 chrY 6386006 6386041 -18327038 + AT_rich Low_complexity Low_complexity 1 35 0 273 320 271 36 chrY 6387349 6387652 -18325427 - L2 LINE L2 -2 3311 2938 2749 23 0 0 chrY 6387672 6387982 -18325097 - AluYa5 SINE Alu -1 310 1 394 225 66 60 chrY 6389026 6389177 -18323902 + MIR SINE MIR 101 252 -10 1133 142 0 6 chrY 6389380 6389556 -18323523 - THE1C LTR MaLR -2 373 199 1808 158 59 31 chrY 6389563 6389917 -18323162 - THE1B LTR MaLR 0 364 1 4449 118 3 0 chrY 6389921 6390538 -18322541 - THE1B-int LTR MaLR -4 1576 958 3181 122 2 0 chrY 6390536 6391012 -18322067 - THE1B-int LTR MaLR -1088 492 16 * 1833 178 48 22 chrY 6391028 6391383 -18321696 - THE1B LTR MaLR 0 364 1 1071 192 21 0 chrY 6391384 6391577 -18321502 - THE1C LTR MaLR -178 197 1 953 214 136 16 chrY 6391656 6391899 -18321180 + AluSx SINE Alu 1 272 -40 281 259 35 26 chrY 6392073 6392189 -18320890 - L1MC5 LINE L1 -528 7433 7317 451 215 9 19 chrY 6392232 6392339 -18320740 - LTR16B LTR ERVL 0 464 359 268 366 37 101 chrY 6392515 6392870 -18320209 + L2 LINE L2 2936 3267 -5 345 283 151 19 chrY 6392970 6393129 -18319950 + MIR SINE MIR 12 191 -71 2019 150 0 3 chrY 6393277 6393570 -18319509 + AluSg SINE Alu 1 292 -18 1163 306 63 42 chrY 6393613 6394417 -18318662 - L2 LINE L2 -19 3294 2466 195 42 0 0 chrY 6394421 6394445 -18318634 + (TAA)n Simple_repeat Simple_repeat 3 26 0 487 302 63 40 chrY 6394458 6394680 -18318399 - MIR SINE MIR -23 239 13 236 289 0 0 chrY 6394816 6394868 -18318211 + LTR30 LTR ERV1 1 52 -670 1199 146 54 65 chrY 6394868 6395131 -18317948 + LTR12 LTR ERV1 53 258 -456 320 283 10 0 chrY 6395132 6395231 -18317848 + LTR30 LTR ERV1 525 624 -98 712 173 3 71 chrY 6395231 6395372 -18317707 + LTR12 LTR ERV1 300 483 -231 * 5773 138 1 7 chrY 6395366 6396258 -18316821 + HERV9 LTR ERV1 2086 2972 -5427 1045 155 92 5 chrY 6396257 6396464 -18316615 + HERV9 LTR ERV1 4756 4980 -3419 * 2282 176 90 88 chrY 6396431 6397330 -18315749 + HERV9 LTR ERV1 840 1740 -5156 269 105 0 0 chrY 6397328 6397366 -18315713 + HERV9 LTR ERV1 7626 7663 -736 * 1410 190 4 0 chrY 6397361 6397614 -18315465 + HERV9 LTR ERV1 7796 8049 -350 255 339 52 17 chrY 6398241 6398356 -18314723 + MIR SINE MIR 56 174 -88 407 309 54 36 chrY 6398567 6398726 -18314353 + MIR3 SINE MIR 35 199 -9 716 296 14 9 chrY 6398726 6398949 -18314130 - MER58A DNA MER1_type 0 224 1 189 0 0 0 chrY 6400274 6400295 -18312784 + (T)n Simple_repeat Simple_repeat 1 21 0 245 29 29 0 chrY 6400473 6400507 -18312572 + (CA)n Simple_repeat Simple_repeat 2 36 0 721 224 8 100 chrY 6400546 6400787 -18312292 + MER20 DNA MER1_type 1 219 0 1988 129 6 3 chrY 6401478 6401789 -18311290 - AluSp SINE Alu -1 312 1 381 271 84 67 chrY 6402052 6402443 -18310636 - L1MC/D LINE L1 -2048 5760 5363 421 298 88 19 chrY 6402496 6402701 -18310378 - L1MC/D LINE L1 -801 5345 5127 1916 140 39 0 chrY 6403162 6403447 -18309632 - AluSx SINE Alu -14 298 3 279 309 50 69 chrY 6403714 6404093 -18308986 - L1MC/D LINE L1 -2200 3946 3575 279 0 0 0 chrY 6404139 6404170 -18308909 + (GA)n Simple_repeat Simple_repeat 2 32 0 1431 176 44 37 chrY 6404244 6404516 -18308563 + THE1B LTR MaLR 1 274 -90 527 238 7 7 chrY 6404550 6404693 -18308386 + L1MB7 LINE L1 6033 6175 -9 358 336 43 43 chrY 6404740 6405020 -18308059 - L2 LINE L2 -809 2505 2226 300 53 0 0 chrY 6405832 6405870 -18307209 + (TG)n Simple_repeat Simple_repeat 2 39 0 319 320 41 46 chrY 6406682 6406876 -18306203 + MIR SINE MIR 60 252 -10 193 111 0 0 chrY 6407660 6407687 -18305392 - MIR SINE MIR -155 107 81 243 88 0 0 chrY 6407701 6407735 -18305344 + (TG)n Simple_repeat Simple_repeat 1 34 0 5869 118 20 3 chrY 6409331 6410780 -18302299 + L1PA11 LINE L1 4697 6169 -5 225 186 0 23 chrY 6410878 6410921 -18302158 + L2 LINE L2 3268 3309 -4 202 302 57 17 chrY 6410922 6411030 -18302049 - MIR SINE MIR -65 143 37 482 302 48 40 chrY 6411277 6411525 -18301554 - MIR SINE MIR -2 260 11 22 0 0 0 chrY 6412210 6412232 -18300847 + AT_rich Low_complexity Low_complexity 1 22 0 1131 233 77 52 chrY 6412360 6412479 -18300600 - MLT1A2 LTR MaLR 0 374 259 1927 154 0 10 chrY 6412479 6412784 -18300295 + AluSx SINE Alu 1 302 -10 1131 233 77 52 chrY 6412784 6413029 -18300050 - MLT1A2 LTR MaLR -115 259 1 266 303 13 0 chrY 6413444 6413520 -18299559 - MER81 DNA DNA -2 112 36 248 175 0 0 chrY 6415239 6415302 -18297777 + L1MA3 LINE L1 6243 6305 0 183 42 0 0 chrY 6415591 6415615 -18297464 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1482 153 3 93 chrY 6415635 6415936 -18297143 - AluSc SINE Alu -35 274 1 589 159 7 43 chrY 6416362 6416500 -18296579 + L1MA7 LINE L1 6158 6290 -1 756 151 0 0 chrY 6417336 6417506 -18295573 - AluSg/x SINE Alu 0 336 167 1454 156 34 1 chrY 6417507 6417745 -18295334 - LTR12 LTR ERV1 0 2425 478 325 247 31 0 chrY 6417752 6417849 -18295230 - LTR30 LTR ERV1 -99 623 524 1274 134 0 144 chrY 6417849 6418126 -18294953 - LTR12 LTR ERV1 -456 258 22 235 214 89 0 chrY 6418126 6418182 -18294897 - AluSq SINE Alu -109 194 134 644 215 15 0 chrY 6418182 6418312 -18294767 - AluJo/FLAM SINE Alu -169 133 2 909 155 7 7 chrY 6419585 6419765 -18293314 - AluSc SINE Alu 0 310 131 671 172 86 17 chrY 6419854 6420028 -18293051 - MER53 DNA DNA -1 188 3 573 320 34 7 chrY 6420138 6420510 -18292569 - L1ME LINE L1 -595 5571 5194 296 298 67 58 chrY 6420698 6420899 -18292180 - L1ME LINE L1 -3415 2731 2533 1995 125 0 67 chrY 6420899 6421227 -18291852 + AluSx SINE Alu 1 306 -6 296 298 67 58 chrY 6421227 6421521 -18291558 - L1ME LINE L1 -3613 2533 2232 207 139 0 0 chrY 6421585 6421621 -18291458 + (TA)n Simple_repeat Simple_repeat 2 37 0 305 318 23 0 chrY 6421624 6421712 -18291367 - L1MC4 LINE L1 -1340 6702 6613 305 318 23 0 chrY 6421712 6421800 -18291279 - L1MC4 LINE L1 -1340 6702 6613 319 311 0 0 chrY 6421813 6421903 -18291176 - L1MC4 LINE L1 -1339 6703 6614 313 233 0 68 chrY 6421820 6421923 -18291156 + L1MC4 LINE L1 6610 6705 -1337 * 480 245 0 0 chrY 6421923 6422066 -18291013 + (TA)n Simple_repeat Simple_repeat 1 143 0 2691 26 0 10 chrY 6422066 6422379 -18290700 - AluYa5 SINE Alu -1 310 1 468 192 30 1 chrY 6422381 6422496 -18290583 - L1MA6 LINE L1 0 6300 6174 24 67 0 0 chrY 6422657 6422702 -18290377 + AT_rich Low_complexity Low_complexity 1 45 0 41 21 0 0 chrY 6422830 6422878 -18290201 + AT_rich Low_complexity Low_complexity 1 48 0 333 309 21 0 chrY 6423094 6423188 -18289891 - MIR SINE MIR -126 136 41 342 0 0 0 chrY 6423223 6423261 -18289818 + (CA)n Simple_repeat Simple_repeat 1 38 0 240 35 0 0 chrY 6423311 6423340 -18289739 + (CA)n Simple_repeat Simple_repeat 2 30 0 386 308 17 8 chrY 6424066 6424186 -18288893 + L2 LINE L2 3189 3309 -4 181 297 16 31 chrY 6425121 6425185 -18287894 + MIR SINE MIR 83 145 -63 1815 171 0 0 chrY 6425507 6425812 -18287267 + AluSx SINE Alu 1 305 0 534 172 104 8 chrY 6426066 6426200 -18286879 + MER96B DNA MER1_type? 88 234 -183 317 359 70 30 chrY 6426417 6426788 -18286291 - L1M4 LINE L1 -3631 2515 2130 364 257 0 38 chrY 6426960 6427065 -18286014 + L1M4 LINE L1 4915 5015 -1131 567 145 84 0 chrY 6427065 6427196 -18285883 + L1MB7 LINE L1 6043 6184 0 1671 226 56 8 chrY 6428309 6428392 -18284687 + LTR2 LTR ERV1 41 119 -330 321 26 0 0 chrY 6428392 6428430 -18284649 + (TAA)n Simple_repeat Simple_repeat 2 39 0 1671 226 56 8 chrY 6428430 6428736 -18284343 + LTR2 LTR ERV1 119 449 0 16359 99 3 5 chrY 6428736 6430999 -18282080 + HERVE LTR ERV1 1 2259 -5554 3242 89 8 43 chrY 6430997 6431481 -18281598 + HERVE LTR ERV1 3061 3527 -4286 * 2087 192 30 82 chrY 6431481 6432076 -18281003 - LTR6A LTR ERV1 0 564 1 244 111 0 74 chrY 6432083 6432137 -18280942 - LTR6B LTR ERV1 -508 50 1 31935 90 3 8 chrY 6432137 6436446 -18276633 + HERVE LTR ERV1 3524 7812 -1 1693 201 67 15 chrY 6436535 6436618 -18276461 + LTR2 LTR ERV1 41 118 -331 369 0 0 0 chrY 6436618 6436659 -18276420 + (TAA)n Simple_repeat Simple_repeat 2 42 0 1693 201 67 15 chrY 6436659 6436964 -18276115 + LTR2 LTR ERV1 118 449 0 12322 68 2 16 chrY 6437024 6439470 -18273609 - L1PA5 LINE L1 -4 6150 3721 474 65 0 0 chrY 6440202 6440264 -18272815 + (ATG)n Simple_repeat Simple_repeat 2 63 0 326 307 102 0 chrY 6440302 6440429 -18272650 - MIR SINE MIR -42 220 81 201 176 0 0 chrY 6442759 6442793 -18270286 + A-rich Low_complexity Low_complexity 1 34 0 1019 268 69 7 chrY 6442955 6443261 -18269818 - MER58B DNA MER1_type -2 339 15 295 373 71 6 chrY 6443470 6443639 -18269440 + MIR SINE MIR 13 192 -70 2021 130 27 0 chrY 6444182 6444481 -18268598 + AluSx SINE Alu 4 310 -2 21 36 0 0 chrY 6444618 6444646 -18268433 + AT_rich Low_complexity Low_complexity 1 28 0 324 0 0 0 chrY 6445160 6445196 -18267883 + (GA)n Simple_repeat Simple_repeat 1 36 0 496 206 24 8 chrY 6445563 6445689 -18267390 + L1MA4 LINE L1 5545 5672 -628 1127 226 0 5 chrY 6445689 6445906 -18267173 + AluJb SINE Alu 65 280 -32 3000 168 11 27 chrY 6445909 6446348 -18266731 + L1MA4 LINE L1 5672 6100 -200 1620 199 3 3 chrY 6446348 6446640 -18266439 + AluJb SINE Alu 1 292 -20 3000 168 11 27 chrY 6446640 6446824 -18266255 + L1MA4 LINE L1 6100 6285 -15 825 304 156 2 chrY 6447371 6447953 -18265126 - L1M4 LINE L1 -3037 3109 2438 368 246 59 36 chrY 6447974 6448194 -18264885 - L1M4 LINE L1 -3784 2362 2138 360 191 0 0 chrY 6448323 6448386 -18264693 - Tigger5 DNA MER2_type -3 2320 2258 215 106 30 76 chrY 6448387 6448453 -18264626 + (TA)n Simple_repeat Simple_repeat 2 64 0 301 229 14 0 chrY 6448502 6448572 -18264507 + L1MCa LINE L1 1994 2064 -4362 25 0 0 0 chrY 6448682 6448707 -18264372 + AT_rich Low_complexity Low_complexity 1 25 0 302 143 0 0 chrY 6449241 6449283 -18263796 - LTR33 LTR ERVL -2 519 478 * 781 339 85 6 chrY 6449282 6449624 -18263455 - LTR33 LTR ERVL -152 369 1 373 289 75 54 chrY 6449822 6450102 -18262977 - L1MC5 LINE L1 -37 7924 7639 485 276 40 9 chrY 6450192 6450458 -18262621 - L1MC5 LINE L1 -413 7395 7262 549 289 49 26 chrY 6450516 6450820 -18262259 - L1MC5 LINE L1 -744 7217 6907 327 333 62 23 chrY 6451918 6452047 -18261032 - MIR3 SINE MIR -43 165 32 182 296 19 0 chrY 6452121 6452175 -18260904 - MIR3 SINE MIR -3 205 151 205 340 28 66 chrY 6452217 6452323 -18260756 - MER5B DNA MER1_type -72 106 5 273 86 52 0 chrY 6453269 6453327 -18259752 + GA-rich Low_complexity Low_complexity 2 62 0 301 361 31 47 chrY 6453656 6453847 -18259232 + MIR SINE MIR 19 206 -56 357 299 48 42 chrY 6454412 6454579 -18258500 + L1ME LINE L1 5326 5493 -628 23 0 0 0 chrY 6455053 6455076 -18258003 + AT_rich Low_complexity Low_complexity 1 23 0 256 319 39 69 chrY 6455575 6455779 -18257300 + MIR SINE MIR 20 217 -45 381 403 0 0 chrY 6456179 6456298 -18256781 + L2 LINE L2 3133 3251 -21 32 0 0 0 chrY 6456326 6456358 -18256721 + AT_rich Low_complexity Low_complexity 1 32 0 204 292 0 0 chrY 6456397 6456445 -18256634 + L2 LINE L2 3248 3295 -18 2555 59 0 0 chrY 6457978 6458284 -18254795 - AluY SINE Alu -5 306 1 7336 105 6 20 chrY 6458729 6459801 -18253278 + MER11C LTR ERVK 1 1057 -14 21 36 0 0 chrY 6463046 6463074 -18250005 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chrY 6463376 6463397 -18249682 + AT_rich Low_complexity Low_complexity 1 21 0 1205 229 14 10 chrY 6463416 6463704 -18249375 + AluJo SINE Alu 13 301 -11 1854 172 7 0 chrY 6463704 6464000 -18249079 + AluSx SINE Alu 1 298 -14 1430 172 0 101 chrY 6465764 6466076 -18247003 + AluSx SINE Alu 1 280 -32 315 0 0 0 chrY 6466076 6466111 -18246968 + (CA)n Simple_repeat Simple_repeat 2 36 0 1430 172 0 101 chrY 6466111 6466124 -18246955 + AluSx SINE Alu 280 293 -19 183 305 67 29 chrY 6469618 6469723 -18243356 + L2 LINE L2 390 498 -2816 510 253 0 0 chrY 6470470 6470569 -18242510 + AluJ/FLAM SINE Alu 3 101 -211 343 120 0 0 chrY 6470589 6470639 -18242440 - MER1B DNA MER1_type -13 316 267 351 107 0 107 chrY 6470808 6470883 -18242196 - MER1B DNA MER1_type -62 277 211 327 134 82 104 chrY 6470978 6471075 -18242004 + L1MA7 LINE L1 6132 6227 -64 937 183 183 38 chrY 6471075 6471338 -18241741 + AluJo SINE Alu 2 302 0 327 134 82 104 chrY 6471338 6471374 -18241705 + L1MA7 LINE L1 6227 6262 -29 239 71 24 0 chrY 6471665 6471707 -18241372 + (TTATG)n Simple_repeat Simple_repeat 2 44 0 2121 81 0 7 chrY 6471842 6472149 -18240930 - AluY SINE Alu 0 305 1 333 47 0 0 chrY 6472172 6472215 -18240864 + (TG)n Simple_repeat Simple_repeat 2 44 0 1759 171 3 7 chrY 6474003 6474313 -18238766 - AluSc SINE Alu 0 309 1 1601 182 0 7 chrY 6476300 6476580 -18236499 + AluSg SINE Alu 5 282 -28 1090 261 38 21 chrY 6478006 6478293 -18234786 - AluJo SINE Alu -10 292 1 28 0 0 0 chrY 6478401 6478429 -18234650 + AT_rich Low_complexity Low_complexity 1 28 0 1767 254 170 15 chrY 6479742 6480542 -18232537 - L1MB4 LINE L1 0 6180 5257 1406 201 31 3 chrY 6482462 6482750 -18230329 - AluSg SINE Alu -14 296 1 193 127 0 48 chrY 6482928 6482991 -18230088 + (TTTTTA)n Simple_repeat Simple_repeat 2 61 0 6586 73 17 8 chrY 6482992 6484414 -18228665 - SVA Other Other -875 1384 29 1411 219 3 14 chrY 6484719 6485007 -18228072 + AluSx SINE Alu 3 287 -25 983 249 55 18 chrY 6485073 6485241 -18227838 - AluJo SINE Alu -13 299 116 258 56 0 0 chrY 6485241 6485277 -18227802 + (TG)n Simple_repeat Simple_repeat 1 36 0 983 249 55 18 chrY 6485277 6485381 -18227698 - AluJo SINE Alu -196 116 17 514 250 48 12 chrY 6485389 6485557 -18227522 - L1MA4 LINE L1 -124 6176 6003 335 162 59 0 chrY 6485560 6485628 -18227451 + L1MA4 LINE L1 6218 6289 -11 276 301 30 38 chrY 6485654 6485787 -18227292 + L1M3d LINE L1 764 895 -5758 360 341 31 63 chrY 6485901 6486185 -18226894 + L1M3d LINE L1 371 662 -5991 2086 140 0 7 chrY 6486185 6486492 -18226587 - AluSx SINE Alu -7 305 1 360 341 31 63 chrY 6486492 6486549 -18226530 + L1M3d LINE L1 662 1436 -5217 1669 212 49 49 chrY 6486830 6487259 -18225820 + MSTB1 LTR MaLR 4 432 0 279 294 9 28 chrY 6487266 6487375 -18225704 + L1M3de LINE L1 649 755 -5898 1613 173 0 44 chrY 6487473 6487802 -18225277 - AluSg SINE Alu 0 316 1 744 338 49 36 chrY 6487886 6488336 -18224743 + L1M3b LINE L1 55 510 -5771 232 204 20 0 chrY 6489182 6489231 -18223848 - L1MC/D LINE L1 -1999 5809 5760 587 211 7 112 chrY 6489499 6489651 -18223428 + FLAM_C SINE Alu 2 137 -6 761 160 6 17 chrY 6490278 6490459 -18222620 + CT-rich Low_complexity Low_complexity 2 180 0 1458 228 0 27 chrY 6490495 6490793 -18222286 - AluSx SINE Alu -8 294 5 1345 226 13 0 chrY 6490838 6491144 -18221935 - AluSx SINE Alu -2 310 1 368 280 58 77 chrY 6491616 6492059 -18221020 - MLT1F LTR MaLR -27 515 102 839 99 0 0 chrY 6497028 6497139 -18215940 - L1P3 LINE L1 -614 5540 5430 2358 104 0 0 chrY 6497139 6497455 -18215624 + L1PA6 LINE L1 5837 6154 0 683 143 7 20 chrY 6498749 6498896 -18214183 + GA-rich Low_complexity Low_complexity 3 147 0 22 35 0 0 chrY 6499406 6499435 -18213644 + AT_rich Low_complexity Low_complexity 1 29 0 720 221 89 13 chrY 6501141 6501254 -18211825 + AluJo SINE Alu 11 141 -171 186 43 0 0 chrY 6501254 6501277 -18211802 + (TTAA)n Simple_repeat Simple_repeat 2 24 0 720 221 89 13 chrY 6501277 6501321 -18211758 + AluJo SINE Alu 141 180 -132 240 174 0 22 chrY 6501359 6501405 -18211674 + Alu SINE Alu 86 130 -172 185 178 67 0 chrY 6501928 6501973 -18211106 + L2 LINE L2 3262 3309 -4 228 299 207 18 chrY 6502366 6502530 -18210549 + LTR33A LTR ERVL 131 325 -198 21 0 0 0 chrY 6502570 6502591 -18210488 + AT_rich Low_complexity Low_complexity 1 21 0 560 198 0 24 chrY 6502591 6502717 -18210362 + LTR1 LTR ERV1 1 123 -662 2421 172 36 62 chrY 6502718 6503327 -18209752 + LTR1 LTR ERV1 89 681 -104 6171 160 112 109 chrY 6503669 6505359 -18207720 + pTR5 LTR ERV1 743 2436 -2 655 170 18 0 chrY 6505393 6505505 -18207574 - MER41E LTR ERV1 -393 119 6 3791 179 51 17 chrY 6507613 6508395 -18204684 - L1PA16 LINE L1 -1 6165 5357 37001 87 3 2 chrY 6508551 6514687 -18198392 - L1PA5 LINE L1 -4 6150 12 22 0 0 0 chrY 6517017 6517039 -18196040 + AT_rich Low_complexity Low_complexity 1 22 0 394 316 73 10 chrY 6517169 6517375 -18195704 - L1ME LINE L1 -653 5511 5293 21 0 0 0 chrY 6517462 6517483 -18195596 + AT_rich Low_complexity Low_complexity 1 21 0 206 315 27 27 chrY 6517761 6517834 -18195245 + MER5A DNA MER1_type 43 115 -74 766 133 9 0 chrY 6519235 6519348 -18193731 - AluSc SINE Alu -193 116 3 24 0 0 0 chrY 6519348 6519372 -18193707 + AT_rich Low_complexity Low_complexity 1 24 0 1590 163 29 0 chrY 6519738 6520061 -18193018 + AluSq SINE Alu 1 331 0 26 0 0 0 chrY 6520220 6520246 -18192833 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chrY 6520727 6520749 -18192330 + AT_rich Low_complexity Low_complexity 1 22 0 327 214 0 22 chrY 6520909 6520998 -18192081 - L1MA9 LINE L1 -147 6165 6079 17557 46 1 28 chrY 6521535 6523851 -18189228 + L1PA4 LINE L1 3159 5449 -706 2183 97 0 31 chrY 6523851 6524171 -18188908 + AluY SINE Alu 1 310 -1 17557 46 1 28 chrY 6524171 6524857 -18188222 + L1PA4 LINE L1 5449 6152 -3 252 86 0 0 chrY 6525636 6525671 -18187408 + (GGAA)n Simple_repeat Simple_repeat 4 38 0 1992 122 17 7 chrY 6528450 6528823 -18184256 - AluY SINE Alu 0 385 10 1451 202 40 11 chrY 6529463 6529740 -18183339 + AluSx SINE Alu 3 287 -25 23 0 0 0 chrY 6529740 6529763 -18183316 + AT_rich Low_complexity Low_complexity 1 23 0 29 21 0 21 chrY 6530124 6530144 -18182935 + AT_rich Low_complexity Low_complexity 1 20 -26 189 0 0 0 chrY 6530144 6530165 -18182914 + (TTATA)n Simple_repeat Simple_repeat 5 25 0 29 21 0 21 chrY 6530165 6530191 -18182888 + AT_rich Low_complexity Low_complexity 20 46 0 405 218 0 0 chrY 6531668 6531792 -18181287 + GA-rich Low_complexity Low_complexity 1 124 0 610 156 11 22 chrY 6532571 6532821 -18180258 + CT-rich Low_complexity Low_complexity 1 247 0 1320 233 0 29 chrY 6532834 6533143 -18179936 - AluSx SINE Alu -8 304 5 356 0 23 0 chrY 6533189 6533233 -18179846 + (TTTTA)n Simple_repeat Simple_repeat 2 46 0 1290 232 11 0 chrY 6533235 6533519 -18179560 - AluSx SINE Alu -25 287 1 234 174 22 0 chrY 6533630 6533676 -18179403 + (CA)n Simple_repeat Simple_repeat 2 48 0 301 254 66 25 chrY 6533998 6534120 -18178959 - MLT1F LTR MaLR -27 515 389 1889 127 55 0 chrY 6537863 6538155 -18174924 - AluY SINE Alu -3 308 1 667 107 0 0 chrY 6539681 6539784 -18173295 - L1P3 LINE L1 -622 5532 5430 2134 115 0 0 chrY 6539784 6540094 -18172985 + L1PA6 LINE L1 5836 6148 -6 216 67 0 0 chrY 6540407 6540437 -18172642 + (A)n Simple_repeat Simple_repeat 1 30 0 1937 131 30 10 chrY 6541000 6541298 -18171781 - AluY SINE Alu -7 304 1 26 30 0 0 chrY 6541935 6541968 -18171111 + AT_rich Low_complexity Low_complexity 1 33 0 21 36 0 0 chrY 6542218 6542246 -18170833 + AT_rich Low_complexity Low_complexity 1 28 0 223 147 44 0 chrY 6543624 6543692 -18169387 + (TAGA)n Simple_repeat Simple_repeat 4 74 0 447 240 62 10 chrY 6543976 6544089 -18168990 + AluJo SINE Alu 11 117 -195 186 43 0 0 chrY 6544089 6544112 -18168967 + (TTAA)n Simple_repeat Simple_repeat 1 23 0 447 240 62 10 chrY 6544112 6544232 -18168847 + AluJo SINE Alu 117 289 -23 181 182 68 0 chrY 6544771 6544815 -18168264 + L2 LINE L2 3263 3309 -4 23 0 0 0 chrY 6545404 6545427 -18167652 + AT_rich Low_complexity Low_complexity 1 23 0 1677 87 138 255 chrY 6545475 6546107 -18166972 + LTR12 LTR ERV1 1 558 -156 5918 138 21 1 chrY 6546121 6547092 -18165987 + HERV9 LTR ERV1 2 991 -7408 25398 119 5 8 chrY 6547099 6551245 -18161834 + HERV9 LTR ERV1 1164 5418 -2981 17412 102 8 14 chrY 6551220 6553913 -18159166 + HERV9 LTR ERV1 5724 8399 0 * 1301 150 74 28 chrY 6553913 6554286 -18158793 + LTR12 LTR ERV1 1 2028 -410 275 277 11 0 chrY 6554287 6554381 -18158698 + LTR30 LTR ERV1 548 642 -80 1335 138 45 0 chrY 6554383 6554607 -18158472 + LTR12 LTR ERV1 481 714 0 2095 179 52 107 chrY 6554608 6555282 -18157797 + LTR1 LTR ERV1 45 681 -104 227 301 46 57 chrY 6556209 6556491 -18156588 + SST1 Satellite centromeric 132 410 -1153 266 271 0 0 chrY 6557155 6557225 -18155854 + SST1 Satellite centromeric 1148 1217 -346 6182 186 5 6 chrY 6557306 6558468 -18154611 + HERVE LTR ERV1 4376 5536 -2277 255 309 44 40 chrY 6559003 6559252 -18153827 + SST1 Satellite centromeric 352 601 -962 252 323 84 12 chrY 6559949 6560116 -18152963 + SST1 Satellite centromeric 1374 1552 -11 224 328 0 0 chrY 6560547 6560611 -18152468 + GA-rich Low_complexity Low_complexity 6 69 0 9075 131 18 6 chrY 6561567 6562952 -18150127 + HERVK14C LTR ERVK 376 1777 -5640 4455 130 12 5 chrY 6562929 6563599 -18149480 + HERVK14C LTR ERVK 1880 2554 -4863 * 15495 102 5 3 chrY 6563580 6565705 -18147374 + HERVK14C LTR ERVK 5289 7417 0 4216 109 3 0 chrY 6565705 6566290 -18146789 + LTR14C LTR ERVK 1 587 0 325 306 56 59 chrY 6568577 6568901 -18144178 + SST1 Satellite centromeric 207 529 -1034 262 289 92 28 chrY 6569685 6569827 -18143252 + SST1 Satellite centromeric 1386 1536 -27 214 254 28 0 chrY 6569832 6569903 -18143176 + (TG)n Simple_repeat Simple_repeat 2 74 0 250 279 0 0 chrY 6571913 6571974 -18141105 + SST1 Satellite centromeric 1157 1217 -346 189 132 0 0 chrY 6572341 6572379 -18140700 + (TG)n Simple_repeat Simple_repeat 1 38 0 274 336 35 38 chrY 6573613 6573902 -18139177 + SST1 Satellite centromeric 314 601 -962 271 341 68 51 chrY 6574363 6574777 -18138302 + SST1 Satellite centromeric 1132 1552 -11 22 0 0 0 chrY 6575360 6575382 -18137697 + AT_rich Low_complexity Low_complexity 1 22 0 2024 36 4 8 chrY 6576163 6576412 -18136667 + L1PA2 LINE L1 5907 6154 -1 278 293 37 52 chrY 6576451 6576642 -18136437 + SST1 Satellite centromeric 414 601 -962 4344 105 108 2 chrY 6576829 6577469 -18135610 - LTR12 LTR ERV1 -6 708 1 227 225 0 0 chrY 6577799 6577839 -18135240 + SST1 Satellite centromeric 1162 1201 -362 303 71 0 0 chrY 6578330 6578372 -18134707 + (TTTA)n Simple_repeat Simple_repeat 4 45 0 243 125 0 0 chrY 6578595 6578635 -18134444 + (CA)n Simple_repeat Simple_repeat 1 40 0 259 301 98 26 chrY 6578673 6578826 -18134253 - SST1 Satellite centromeric -26 1537 1374 286 291 78 76 chrY 6579530 6579991 -18133088 - SST1 Satellite centromeric -962 601 140 195 114 0 0 chrY 6581066 6581101 -18131978 + (CA)n Simple_repeat Simple_repeat 2 36 0 236 348 0 0 chrY 6581458 6581550 -18131529 - SST1 Satellite centromeric -324 1239 1148 442 330 55 39 chrY 6582030 6582594 -18130485 - SST1 Satellite centromeric -962 601 29 286 85 34 0 chrY 6583319 6583378 -18129701 + T-rich Low_complexity Low_complexity 97 157 0 277 326 59 39 chrY 6584540 6584927 -18128152 - SST1 Satellite centromeric -962 601 207 225 0 0 0 chrY 6585839 6585864 -18127215 + (T)n Simple_repeat Simple_repeat 1 25 0 246 95 0 0 chrY 6586062 6586104 -18126975 + (CA)n Simple_repeat Simple_repeat 1 42 0 213 121 0 0 chrY 6588450 6588483 -18124596 + (GAA)n Simple_repeat Simple_repeat 2 34 0 249 250 0 0 chrY 6588521 6588593 -18124486 + (CA)n Simple_repeat Simple_repeat 1 72 0 294 315 68 14 chrY 6588626 6588772 -18124307 - SST1 Satellite centromeric -25 1538 1385 337 296 88 33 chrY 6589512 6589752 -18123327 - SST1 Satellite centromeric -962 601 349 204 143 0 0 chrY 6591018 6591060 -18122019 + (CA)n Simple_repeat Simple_repeat 1 42 0 371 296 92 50 chrY 6591940 6592298 -18120781 - SST1 Satellite centromeric -962 601 229 214 247 14 0 chrY 6593465 6593538 -18119541 + (CA)n Simple_repeat Simple_repeat 1 74 0 229 288 86 91 chrY 6593540 6593925 -18119154 - SST1 Satellite centromeric -25 1538 1156 345 237 36 57 chrY 6594420 6594614 -18118465 - SST1 Satellite centromeric -962 601 412 1711 104 0 0 chrY 6594639 6594860 -18118219 - AluY SINE Alu -90 221 1 943 184 70 0 chrY 6595064 6595292 -18117787 - MER33 DNA MER1_type -54 270 27 229 309 129 17 chrY 6595311 6595489 -18117590 - L1ME4a LINE L1 -40 6081 5884 462 120 80 0 chrY 6598367 6598570 -18114509 + (TA)n Simple_repeat Simple_repeat 1 219 0 614 107 72 4 chrY 6598654 6598934 -18114145 + (TA)n Simple_repeat Simple_repeat 1 299 0 647 224 0 0 chrY 6599213 6599329 -18113750 - FLAM_A SINE Alu -17 116 1 1959 146 3 0 chrY 6599449 6599744 -18113335 - AluSq SINE Alu -5 308 13 275 70 0 23 chrY 6600125 6600168 -18112911 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 191 195 49 0 chrY 6600936 6600977 -18112102 + L2 LINE L2 3227 3269 -3 1442 187 10 49 chrY 6603959 6604135 -18108944 - AluSx SINE Alu -19 293 133 1484 214 7 0 chrY 6604135 6604434 -18108645 - AluSx SINE Alu -11 301 1 1442 187 10 49 chrY 6604434 6604562 -18108517 - AluSx SINE Alu -179 133 1 23 54 0 0 chrY 6604571 6604608 -18108471 + AT_rich Low_complexity Low_complexity 1 37 0 1515 144 128 4 chrY 6604869 6605126 -18107953 - AluSg SINE Alu -9 291 3 333 0 0 0 chrY 6605128 6605137 -18107942 + (TG)n Simple_repeat Simple_repeat 1 46 0 333 0 0 0 chrY 6605137 6605174 -18107905 + (TG)n Simple_repeat Simple_repeat 2 38 0 1371 156 0 36 chrY 6605507 6605732 -18107347 - AluSx SINE Alu -95 217 1 1003 244 69 18 chrY 6606356 6606968 -18106111 - L1ME4a LINE L1 -748 5398 4924 239 287 63 21 chrY 6607024 6607167 -18105912 + TAR1 Satellite telomeric 309 457 -1654 228 338 110 0 chrY 6607244 6607389 -18105690 + TAR1 Satellite telomeric 1765 1925 -186 4499 131 135 0 chrY 6608498 6609226 -18103853 + LTR12 LTR ERV1 1 826 0 7699 140 15 15 chrY 6609250 6610596 -18102483 + HERV9 LTR ERV1 58 1317 -7082 1320 164 4 17 chrY 6810599 6810830 -17902249 + AluSg/x SINE Alu 66 293 -19 4437 311 38 15 chrY 6810830 6812880 -17900199 - MER52-int LTR ERV1 -44 8875 6743 7945 282 31 16 chrY 6812903 6815202 -17897877 - MER52-int LTR ERV1 -668 6423 4122 1603 283 29 11 chrY 6815209 6815658 -17897421 - MER52-int LTR ERV1 -3419 3672 3216 * 1936 287 36 33 chrY 6815656 6816857 -17896222 + HUERS-P3b LTR ERV1 1650 2791 -4270 4714 34 0 0 chrY 6816857 6817425 -17895654 - L1P LINE L1 -1733 4413 3846 7780 18 1 0 chrY 6817425 6818586 -17894493 + L1PA2 LINE L1 4994 6155 0 1177 331 24 27 chrY 6818588 6819002 -17894077 + HUERS-P3b LTR ERV1 2778 3190 -5729 1533 272 32 24 chrY 6819002 6819371 -17893708 + LTR25 LTR ERV1 1 376 -418 234 0 0 0 chrY 6819371 6819397 -17893682 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1533 272 32 24 chrY 6819397 6819491 -17893588 + LTR25 LTR ERV1 376 468 -326 733 199 175 0 chrY 6819531 6819702 -17893377 + LTR25 LTR ERV1 408 608 -186 3693 215 33 27 chrY 6819709 6819810 -17893269 + HUERS-P3b LTR ERV1 1256 1355 -5850 1465 177 32 0 chrY 6819810 6820058 -17893021 + AluSx SINE Alu 30 285 -27 255 31 0 0 chrY 6820058 6820090 -17892989 + (CA)n Simple_repeat Simple_repeat 2 33 0 3693 215 33 27 chrY 6820090 6820323 -17892756 + HUERS-P3b LTR ERV1 1355 1585 -5620 1517 158 115 0 chrY 6820323 6820583 -17892496 + AluSg1 SINE Alu 2 291 -18 3693 215 33 27 chrY 6820583 6821299 -17891780 + HUERS-P3b LTR ERV1 1585 4649 -2556 555 121 0 0 chrY 6821308 6821391 -17891688 + AluSc SINE Alu 1 83 -226 * 697 160 40 0 chrY 6821385 6821510 -17891569 + Alu SINE Alu 176 305 -6 4445 229 57 54 chrY 6821521 6822538 -17890541 + HUERS-P3b LTR ERV1 4391 5403 -1593 2016 133 0 41 chrY 6822538 6822855 -17890224 + AluSq SINE Alu 1 304 -9 4445 229 57 54 chrY 6822855 6823892 -17889187 + HUERS-P3b LTR ERV1 5403 6996 0 2345 253 5 93 chrY 6823892 6824691 -17888388 + LTR25 LTR ERV1 1 729 -65 192 97 0 0 chrY 6824695 6824726 -17888353 + (TG)n Simple_repeat Simple_repeat 2 32 0 261 232 0 14 chrY 6824730 6824799 -17888280 - L1MC4 LINE L1 -1339 6703 6636 846 249 27 22 chrY 6824928 6825153 -17887926 - LTR25-int LTR ERV1 -6228 2691 2466 1641 294 47 55 chrY 6825209 6825936 -17887143 - LTR25-int LTR ERV1 -6440 2479 1759 2740 228 17 47 chrY 6826016 6826661 -17886418 - LTR25-int LTR ERV1 0 6996 6333 1398 167 130 4 chrY 6826661 6826930 -17886149 + AluSp SINE Alu 1 303 0 2740 228 17 47 chrY 6826930 6827279 -17885800 - LTR25-int LTR ERV1 -663 6333 3314 2513 264 88 51 chrY 6827298 6827426 -17885653 - LTR25-int LTR ERV1 -1355 5736 5614 1838 146 0 34 chrY 6827426 6827720 -17885359 - AluSc SINE Alu -25 284 1 2513 264 88 51 chrY 6827720 6828511 -17884568 - LTR25-int LTR ERV1 -1477 5614 4783 3298 126 10 6 chrY 6828511 6829020 -17884059 - MER9 LTR ERVK 0 511 1 15615 94 7 29 chrY 6829022 6831275 -17881804 - HERVK9 LTR ERVK -3 5913 3711 20927 86 2 2 chrY 6831275 6834063 -17879016 - HERVK9 LTR ERVK -3130 2786 1 3216 152 0 2 chrY 6834063 6834575 -17878504 - MER9 LTR ERVK 0 511 1 6772 287 21 50 chrY 6834575 6836746 -17876333 - LTR25-int LTR ERV1 -2303 4788 2682 2636 226 26 94 chrY 6836751 6837603 -17875476 + LTR25 LTR ERV1 1 794 0 3093 258 48 42 chrY 6837704 6838347 -17874732 + HUERS-P3 LTR ERV1 252 905 -6091 1742 173 6 13 chrY 6838347 6838660 -17874419 - AluSq SINE Alu -2 311 1 3093 258 48 42 chrY 6838660 6839124 -17873955 + HUERS-P3 LTR ERV1 905 1365 -5631 3556 271 72 47 chrY 6839181 6839461 -17873618 + HUERS-P3 LTR ERV1 1480 1751 -5500 1255 208 93 11 chrY 6839461 6839721 -17873358 + AluSx SINE Alu 1 285 -27 204 111 0 0 chrY 6839721 6839757 -17873322 + (CATATA)n Simple_repeat Simple_repeat 4 39 0 3556 271 72 47 chrY 6839765 6840302 -17872777 + HUERS-P3 LTR ERV1 1751 2273 -4978 189 0 0 0 chrY 6840302 6840323 -17872756 + (CTG)n Simple_repeat Simple_repeat 1 21 0 3556 271 72 47 chrY 6840323 6841122 -17871957 + HUERS-P3 LTR ERV1 2273 3034 -4217 7748 264 38 40 chrY 6841166 6842722 -17870357 - LTR25-int LTR ERV1 -4336 2660 1112 1827 183 3 0 chrY 6842722 6843022 -17870057 + AluSg SINE Alu 1 301 -9 7748 264 38 40 chrY 6843022 6844130 -17868949 - LTR25-int LTR ERV1 -5884 1112 3 826 282 106 12 chrY 6844152 6844492 -17868587 - LTR25 LTR ERV1 -2 792 421 1652 309 22 2 chrY 6844611 6845157 -17867922 + HUERS-P3 LTR ERV1 2512 3045 -4300 1407 242 48 0 chrY 6845184 6845540 -17867539 - LTR25 LTR ERV1 0 794 422 290 185 0 0 chrY 6845541 6845595 -17867484 - LTR25 LTR ERV1 -260 534 481 * 1495 257 68 55 chrY 6845587 6846262 -17866817 - LTR25 LTR ERV1 -51 743 32 255 241 149 0 chrY 6846337 6846424 -17866655 - Tigger4(Zombi) DNA MER2_type -2631 100 1 603 280 147 0 chrY 6846552 6846763 -17866316 + MER21B LTR ERV1 1 242 -621 3504 279 128 85 chrY 6846765 6848264 -17864815 + MER52A LTR ERV1 4 1567 -188 601 225 8 0 chrY 6848281 6848401 -17864678 + MER21B LTR ERV1 236 356 -507 4290 265 106 24 chrY 6851276 6853291 -17859788 - L1M4c LINE L1 -4179 2205 25 22 0 0 0 chrY 6853447 6853469 -17859610 + AT_rich Low_complexity Low_complexity 1 22 0 25 51 0 0 chrY 6853499 6853538 -17859541 + AT_rich Low_complexity Low_complexity 1 39 0 929 296 139 14 chrY 6853759 6854644 -17858435 - L1M4c LINE L1 -4662 1984 989 310 333 39 26 chrY 6854748 6854901 -17858178 - L1M4c LINE L1 -5773 769 615 391 339 60 39 chrY 6855703 6855958 -17857121 - L2 LINE L2 -280 3033 2763 270 245 0 0 chrY 6855992 6856045 -17857034 + MER20 DNA MER1_type 93 145 -74 180 77 0 0 chrY 6857324 6857350 -17855729 + (TTA)n Simple_repeat Simple_repeat 2 27 0 180 179 0 0 chrY 6857836 6857875 -17855204 + (TA)n Simple_repeat Simple_repeat 1 39 0 1847 164 59 16 chrY 6857903 6858276 -17854803 - MLT2A1 LTR ERVL -44 400 12 16355 140 10 12 chrY 6858283 6858613 -17854466 - HERVL-A1-A1 LTR ERVL -1 5653 5324 2689 16 0 7 chrY 6858613 6858917 -17854162 + AluY SINE Alu 1 302 -9 16355 140 10 12 chrY 6858917 6862269 -17850810 - HERVL-A1-A1 LTR ERVL -330 5324 1998 11443 147 11 9 chrY 6862274 6864110 -17848969 - HERVL-A1-A1 LTR ERVL -3814 1840 1 2198 147 62 14 chrY 6864112 6864534 -17848545 - MLT2A1 LTR ERVL -2 442 1 325 271 27 0 chrY 6864534 6864632 -17848447 + MER52A LTR ERV1 626 729 -549 51 65 0 0 chrY 6864660 6864753 -17848326 + AT_rich Low_complexity Low_complexity 1 93 0 551 258 61 42 chrY 6864756 6864969 -17848110 + MER52A LTR ERV1 825 1041 -714 * 3509 263 37 23 chrY 6864962 6865941 -17847138 + MER52A LTR ERV1 858 1755 0 213 132 0 0 chrY 6866026 6866064 -17847015 + (TAGA)n Simple_repeat Simple_repeat 4 41 0 261 57 0 0 chrY 6866064 6866099 -17846980 + (TG)n Simple_repeat Simple_repeat 2 36 0 1623 203 0 0 chrY 6866099 6866375 -17846704 - AluSg SINE Alu -34 276 1 3656 199 23 23 chrY 6867038 6867816 -17845263 + L1PA10 LINE L1 5388 6165 -3 854 213 0 0 chrY 6867883 6868043 -17845036 - AluSc SINE Alu -15 294 135 21 0 0 0 chrY 6868049 6868070 -17845009 + AT_rich Low_complexity Low_complexity 1 21 0 868 280 94 4 chrY 6868135 6868410 -17844669 - AluSx SINE Alu -1 301 2 22 35 0 0 chrY 6868450 6868479 -17844600 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chrY 6869703 6869724 -17843355 + AT_rich Low_complexity Low_complexity 1 21 0 231 287 178 11 chrY 6870068 6870242 -17842837 - L1MC4a LINE L1 -1849 5959 5757 887 119 179 12 chrY 6870560 6870728 -17842351 + pTR5 LTR ERV1 1830 2025 -413 364 194 41 31 chrY 6870728 6870826 -17842253 + LTR30 LTR ERV1 544 642 -80 1517 108 0 5 chrY 6870829 6871051 -17842028 + pTR5 LTR ERV1 172 392 -2046 2874 169 78 0 chrY 6871052 6871554 -17841525 + THE1B-int LTR MaLR 1040 1580 0 1524 170 94 26 chrY 6871554 6871895 -17841184 + THE1B LTR MaLR 1 364 0 554 258 26 26 chrY 6872139 6872290 -17840789 - AluJo SINE Alu -30 282 132 443 294 8 8 chrY 6872314 6872440 -17840639 - AluJo SINE Alu -175 127 2 336 358 8 0 chrY 6872454 6872577 -17840502 - AluJ SINE Alu -178 124 1 21 36 0 0 chrY 6872781 6872809 -17840270 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chrY 6873160 6873183 -17839896 + AT_rich Low_complexity Low_complexity 1 23 0 2070 128 3 3 chrY 6873834 6874132 -17838947 + AluY SINE Alu 1 298 -13 1646 156 14 21 chrY 6874414 6874703 -17838376 + AluSc SINE Alu 1 287 -22 717 265 29 5 chrY 6874823 6875027 -17838052 + MER2 DNA MER2_type 2 210 -135 255 259 62 0 chrY 6875290 6875371 -17837708 - MIR SINE MIR 0 262 177 1452 146 0 0 chrY 6875375 6875594 -17837485 - AluSq SINE Alu -14 299 81 1811 122 3 53 chrY 6875661 6875964 -17837115 + AluY SINE Alu 1 288 -23 1184 101 0 6 chrY 6875968 6876147 -17836932 + (GGAAA)n Simple_repeat Simple_repeat 3 180 0 414 232 0 0 chrY 6877063 6877132 -17835947 - FRAM SINE Alu -35 131 63 2386 216 11 2 chrY 6877136 6877604 -17835475 + MER1A DNA MER1_type 19 490 -39 8886 34 1 0 chrY 6877604 6878679 -17834400 - L1PA2 LINE L1 -1333 4813 3738 7686 24 0 0 chrY 6878679 6880022 -17833057 + L1PA2 LINE L1 4810 6153 -2 1867 134 69 0 chrY 6880030 6880306 -17832773 + AluSq SINE Alu 1 295 -18 237 158 0 0 chrY 6880481 6880519 -17832560 + MER1A DNA MER1_type 479 516 -17 814 278 102 4 chrY 6881198 6881443 -17831636 - AluSq SINE Alu -44 269 1 24 85 0 0 chrY 6881536 6881595 -17831484 + AT_rich Low_complexity Low_complexity 1 59 0 461 253 0 0 chrY 6881839 6881934 -17831145 - AluJb SINE Alu -131 181 87 249 239 92 18 chrY 6881943 6882052 -17831027 + L1MC5 LINE L1 7656 7772 -189 22 35 0 0 chrY 6882099 6882128 -17830951 + AT_rich Low_complexity Low_complexity 1 29 0 1930 134 0 36 chrY 6883779 6884085 -17828994 - AluY SINE Alu -15 296 2 22 0 0 0 chrY 6884613 6884635 -17828444 + AT_rich Low_complexity Low_complexity 1 22 0 227 170 0 0 chrY 6885696 6885743 -17827336 + LTR66 LTR ERVL 393 439 -171 262 261 0 22 chrY 6885753 6885845 -17827234 + L1MC4 LINE L1 6614 6703 -1339 1926 108 35 3 chrY 6885846 6886134 -17826945 - AluY SINE Alu -14 297 1 2609 61 0 0 chrY 6886245 6886556 -17826523 + AluY SINE Alu 1 311 0 435 151 8 17 chrY 6886564 6886683 -17826396 + (TA)n Simple_repeat Simple_repeat 2 119 0 285 223 43 11 chrY 6886709 6886803 -17826276 + L1MC4 LINE L1 6608 6704 -1338 23 0 0 0 chrY 6887459 6887482 -17825597 + AT_rich Low_complexity Low_complexity 1 23 0 30 77 0 0 chrY 6888140 6888205 -17824874 + AT_rich Low_complexity Low_complexity 1 65 0 860 249 144 4 chrY 6888310 6888567 -17824512 + AluSg SINE Alu 7 299 -11 23 33 0 0 chrY 6888678 6888708 -17824371 + AT_rich Low_complexity Low_complexity 1 30 0 3467 211 24 14 chrY 6888710 6889470 -17823609 - L1PA10 LINE L1 -1 6167 5401 1602 177 3 31 chrY 6889519 6889807 -17823272 - AluSq SINE Alu -23 290 11 286 130 87 76 chrY 6889998 6890090 -17822989 + MER20 DNA MER1_type 127 219 0 2375 288 45 0 chrY 6890360 6890934 -17822145 - MER52A LTR ERV1 0 1755 1156 1094 132 6 0 chrY 6890934 6891101 -17821978 + ERVL-A1 LTR ERVL 714 881 -4773 2228 160 46 64 chrY 6891101 6891601 -17821478 - LTR22B LTR ERVK 0 492 2 5065 151 14 20 chrY 6891602 6892410 -17820669 - HERVK22 LTR ERVK 0 6837 6033 7959 86 3 8 chrY 6892410 6893487 -17819592 - MER11C LTR ERVK 0 1071 1 5065 151 14 20 chrY 6893487 6893528 -17819551 - HERVK22 LTR ERVK -804 6033 5993 30494 139 25 18 chrY 6893556 6893631 -17819448 - HERVK22 LTR ERVK -951 5886 5813 2021 128 0 4 chrY 6893631 6893912 -17819167 - AluY SINE Alu -29 282 3 30494 139 25 18 chrY 6893912 6898775 -17814304 - HERVK22 LTR ERVK -1024 5813 911 2709 195 2 6 chrY 6898782 6899269 -17813810 - HERVK22 LTR ERVK -6345 492 8 2414 164 41 31 chrY 6899277 6899764 -17813315 - LTR22B LTR ERVK 0 492 1 14023 195 26 7 chrY 6899764 6902965 -17810114 + ERVL-A1 LTR ERVL 876 4613 -1151 4596 135 19 26 chrY 6902977 6903735 -17809344 + ERVL-A1 LTR ERVL 4901 5652 -2 1858 168 63 16 chrY 6903737 6904119 -17808960 + MLT2A1 LTR ERVL 1 400 -44 23 68 0 0 chrY 6904313 6904357 -17808722 + AT_rich Low_complexity Low_complexity 1 44 0 297 228 0 0 chrY 6905098 6905155 -17807924 - MER20 DNA MER1_type -73 146 90 236 357 21 36 chrY 6905212 6905352 -17807727 + L2 LINE L2 2791 2928 -386 24 32 0 0 chrY 6905851 6905882 -17807197 + AT_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chrY 6906530 6906554 -17806525 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chrY 6906622 6906650 -17806429 + AT_rich Low_complexity Low_complexity 1 28 0 286 279 61 35 chrY 6906700 6906897 -17806182 + L1M4c LINE L1 2295 2496 -3888 3454 260 99 40 chrY 6906924 6908632 -17804447 + L1M4c LINE L1 25 1834 -4550 3934 55 2 0 chrY 6908719 6909214 -17803865 - L1PA3 LINE L1 -3 6152 5657 1823 144 0 7 chrY 6909215 6909493 -17803586 - AluY SINE Alu -35 276 1 494 65 0 0 chrY 6909495 6909557 -17803522 - Alu SINE Alu -11 301 240 472 200 11 0 chrY 6909557 6909647 -17803432 - MER21B LTR ERV1 -522 341 251 2808 305 12 20 chrY 6909660 6910500 -17802579 - MER52A LTR ERV1 0 1755 923 607 321 98 4 chrY 6910468 6910733 -17802346 - MER52A LTR ERV1 -659 1096 807 * 332 236 23 23 chrY 6910789 6911103 -17801976 + (CCCTAA)n Simple_repeat Simple_repeat 1 314 0 222 128 0 0 chrY 6911122 6911161 -17801918 + (CCCCAA)n Simple_repeat Simple_repeat 4 42 0 207 182 0 45 chrY 6911299 6911409 -17801670 + (CCCTAA)n Simple_repeat Simple_repeat 5 109 0 336 275 22 34 chrY 6911432 6911610 -17801469 + (CCCTAA)n Simple_repeat Simple_repeat 5 180 0 181 200 16 24 chrY 6911632 6911757 -17801322 + (CCCTAA)n Simple_repeat Simple_repeat 3 126 0 290 175 6 44 chrY 6911949 6912109 -17800970 + (CCCTAA)n Simple_repeat Simple_repeat 5 158 0 294 149 0 64 chrY 6912431 6912572 -17800507 + (CCCTAA)n Simple_repeat Simple_repeat 1 132 0 245 195 17 17 chrY 6912587 6912705 -17800374 + (CCCTAA)n Simple_repeat Simple_repeat 3 120 0 371 183 0 39 chrY 6912716 6912982 -17800097 + (CCCTAA)n Simple_repeat Simple_repeat 1 255 0 485 172 24 18 chrY 6913046 6913215 -17799864 + (CCCTAA)n Simple_repeat Simple_repeat 6 175 0 707 318 58 18 chrY 6913403 6914003 -17799076 + L1M4 LINE L1 3676 4299 -1847 30 45 0 0 chrY 6914514 6914558 -17798521 + AT_rich Low_complexity Low_complexity 1 44 0 1926 142 10 0 chrY 6914570 6914859 -17798220 - AluY SINE Alu -19 292 1 21 0 0 0 chrY 6914945 6914966 -17798113 + AT_rich Low_complexity Low_complexity 1 21 0 748 168 147 19 chrY 6915228 6915419 -17797660 + AluJb SINE Alu 19 289 -23 1864 160 0 7 chrY 6915481 6915805 -17797274 + AluSx SINE Alu 1 312 0 532 256 47 23 chrY 6916033 6916205 -17796874 + AluJo SINE Alu 121 296 -16 2272 231 91 46 chrY 6916212 6917156 -17795923 + L1M4 LINE L1 4403 5389 -757 235 340 90 33 chrY 6918420 6918632 -17794447 - TAR1 Satellite telomeric -123 1988 1765 672 245 86 27 chrY 6919010 6919391 -17793688 + L1MC/D LINE L1 5155 5556 -743 997 186 0 11 chrY 6919391 6919574 -17793505 + MER34C LTR ERV1 38 218 -367 518 214 7 0 chrY 6919580 6919725 -17793354 + CT-rich Low_complexity Low_complexity 2 147 0 1409 198 4 8 chrY 6919743 6920006 -17793073 - AluSg SINE Alu -33 277 16 245 217 67 0 chrY 6920024 6920084 -17792995 + MER34C LTR ERV1 211 274 -311 557 216 0 0 chrY 6920084 6920186 -17792893 - MLT2B3 LTR ERVL -452 102 1 1163 247 25 25 chrY 6920186 6920619 -17792460 + MER31-int LTR ERV1 1062 1494 -3442 318 195 121 116 chrY 6920777 6920817 -17792262 + MER31-int LTR ERV1 1808 1846 -3090 1892 143 40 7 chrY 6920817 6921118 -17791961 - AluSq SINE Alu 0 313 3 318 195 121 116 chrY 6921118 6921292 -17791787 + MER31-int LTR ERV1 1846 2023 -2913 3503 142 0 21 chrY 6921295 6921815 -17791264 + MER9 LTR ERVK 3 511 0 11117 90 73 35 chrY 6921815 6922578 -17790501 + HERVK9 LTR ERVK 1 734 -5182 192 214 0 71 chrY 6922578 6922634 -17790445 + MER5B DNA MER1_type 58 109 -69 11117 90 73 35 chrY 6922634 6923475 -17789604 + HERVK9 LTR ERVK 734 1723 -4193 6675 132 10 25 chrY 6923477 6924548 -17788531 + MER11C LTR ERVK 3 1057 -14 4237 83 2 0 chrY 6924587 6925131 -17787948 + HERVK9 LTR ERVK 1718 2262 -3654 2877 59 6 0 chrY 6925131 6925488 -17787591 + HERVK9 LTR ERVK 2428 2786 -3130 13735 98 11 28 chrY 6925488 6927445 -17785634 + HERVK9 LTR ERVK 3711 5635 -281 2197 130 14 13 chrY 6927469 6927820 -17785259 + HERVK9 LTR ERVK 5635 5913 -3 3558 139 0 10 chrY 6927822 6928338 -17784741 + MER9 LTR ERVK 1 511 0 678 269 40 45 chrY 6928347 6928700 -17784379 + MER31-int LTR ERV1 2939 3289 -1647 855 247 63 26 chrY 6928785 6929056 -17784023 + MER31-int LTR ERV1 3342 3622 -1314 2514 154 26 100 chrY 6929056 6929709 -17783370 + MER4B LTR ERV1 4 779 0 271 178 59 69 chrY 6929719 6929820 -17783259 + MER31-int LTR ERV1 3623 3722 -1214 1969 264 79 14 chrY 6929912 6930797 -17782282 - L1M4 LINE L1 -698 5486 4559 21 0 0 0 chrY 6932330 6932351 -17780728 + AT_rich Low_complexity Low_complexity 1 21 0 220 281 50 50 chrY 6934163 6934266 -17778813 + L2 LINE L2 2321 2426 -888 1709 183 7 0 chrY 6934266 6934555 -17778524 + AluSx SINE Alu 3 293 -19 220 281 50 50 chrY 6934555 6934590 -17778489 + L2 LINE L2 2425 2459 -855 1645 184 0 19 chrY 6934590 6934906 -17778173 + AluSx SINE Alu 1 310 -2 2253 163 14 0 chrY 6935011 6935361 -17777718 - THE1A LTR MaLR 0 355 1 293 284 114 49 chrY 6935829 6936416 -17776663 - L1M4 LINE L1 -2401 3745 3121 324 322 9 0 chrY 6936455 6936570 -17776509 - L1M4 LINE L1 -3124 3022 2907 1988 291 34 23 chrY 6936593 6937125 -17775954 - HAL1 LINE L1 -458 2049 1503 1806 132 7 65 chrY 6937125 6937435 -17775644 - AluSp SINE Alu -21 292 1 1988 291 34 23 chrY 6937435 6937726 -17775353 - HAL1 LINE L1 -1004 1503 1217 237 205 128 26 chrY 6938004 6938082 -17774997 - L2 LINE L2 -50 3222 3137 1806 167 3 0 chrY 6938114 6938402 -17774677 + AluY SINE Alu 4 292 -19 1954 147 3 0 chrY 6938881 6939187 -17773892 + AluSp SINE Alu 1 307 -6 375 282 16 75 chrY 6939550 6939738 -17773341 + MER5B DNA MER1_type 2 178 0 1479 211 43 0 chrY 6939837 6940116 -17772963 - AluSg SINE Alu -19 291 1 24 0 0 0 chrY 6940116 6940140 -17772939 + AT_rich Low_complexity Low_complexity 1 24 0 1229 188 7 72 chrY 6940157 6940450 -17772629 + AluJb SINE Alu 7 280 -32 303 157 96 12 chrY 6940456 6940539 -17772540 + L1MC4 LINE L1 6614 6703 -1339 200 100 25 0 chrY 6943234 6943274 -17769805 + (TG)n Simple_repeat Simple_repeat 2 42 0 549 301 51 36 chrY 6944383 6944772 -17768307 + SST1 Satellite centromeric 207 601 -962 244 319 68 47 chrY 6945240 6945623 -17767456 + SST1 Satellite centromeric 1148 1538 -25 210 71 0 0 chrY 6945668 6945696 -17767383 + (TG)n Simple_repeat Simple_repeat 1 28 0 229 274 79 55 chrY 6948062 6948226 -17764853 + SST1 Satellite centromeric 800 967 -596 188 26 0 105 chrY 6948495 6948533 -17764546 + (CA)n Simple_repeat Simple_repeat 1 34 0 253 348 35 31 chrY 6949385 6949672 -17763407 - SST1 Satellite centromeric -962 601 314 208 247 25 0 chrY 6950908 6950989 -17762090 + (CA)n Simple_repeat Simple_repeat 1 83 0 228 86 0 0 chrY 6953375 6953410 -17759669 + (CA)n Simple_repeat Simple_repeat 2 36 0 276 299 0 0 chrY 6953744 6953821 -17759258 - SST1 Satellite centromeric -324 1239 1163 414 305 55 52 chrY 6954302 6954816 -17758263 - SST1 Satellite centromeric -952 611 97 21 0 0 0 chrY 6955311 6955332 -17757747 + AT_rich Low_complexity Low_complexity 1 21 0 4407 111 5 3 chrY 6956955 6957541 -17755538 - LTR14C LTR ERVK 0 587 1 11268 106 13 1 chrY 6957541 6959646 -17753433 - HERVK14C LTR ERVK 0 7417 5289 4512 94 19 5 chrY 6959627 6960256 -17752823 - HERVK14C LTR ERVK -4863 2554 1917 * 11917 122 13 22 chrY 6960248 6962040 -17751039 - HERVK14C LTR ERVK -5640 1777 1 4069 98 3 46 chrY 6962040 6962375 -17750704 - LTR14C LTR ERVK 0 587 288 1902 121 48 0 chrY 6962375 6962648 -17750431 + AluY SINE Alu 1 286 -25 4069 98 3 46 chrY 6962648 6962925 -17750154 - LTR14C LTR ERVK -299 288 1 1662 236 25 25 chrY 6963655 6964104 -17748975 - LTR2 LTR ERV1 0 449 1 20069 213 49 49 chrY 6964104 6971806 -17741273 - HERVE LTR ERV1 -2 7811 1 1574 225 70 16 chrY 6971806 6972030 -17741049 - LTR2 LTR ERV1 0 449 239 183 80 0 0 chrY 6972030 6972055 -17741024 + (CAGAA)n Simple_repeat Simple_repeat 1 25 0 1574 225 70 16 chrY 6972055 6972256 -17740823 - LTR2 LTR ERV1 -210 239 1 200 149 21 0 chrY 6972844 6972891 -17740188 + (CA)n Simple_repeat Simple_repeat 1 48 0 198 0 0 0 chrY 6973146 6973168 -17739911 + (T)n Simple_repeat Simple_repeat 1 22 0 501 279 58 58 chrY 6973823 6974217 -17738862 - SST1 Satellite centromeric -963 600 207 306 269 81 31 chrY 6975065 6975225 -17737854 - SST1 Satellite centromeric -11 1552 1385 235 303 0 0 chrY 6975377 6975453 -17737626 - SST1 Satellite centromeric -325 1238 1163 272 306 68 62 chrY 6975950 6976417 -17736662 - SST1 Satellite centromeric -962 601 132 468 278 69 71 chrY 6977563 6977955 -17735124 - SST1 Satellite centromeric -25 1538 1148 465 271 80 74 chrY 6978423 6978911 -17734168 - SST1 Satellite centromeric -962 601 111 2572 164 29 134 chrY 6979815 6980576 -17732503 - LTR1 LTR ERV1 -104 681 1 284 239 122 94 chrY 6980681 6980861 -17732218 - LTR33A LTR ERVL -275 248 64 464 202 12 0 chrY 6981776 6981860 -17731219 - AluJo SINE Alu -23 289 205 * 657 221 89 13 chrY 6981852 6981896 -17731183 - AluJo SINE Alu -132 180 141 186 43 0 0 chrY 6981896 6981919 -17731160 + (TTAA)n Simple_repeat Simple_repeat 1 23 0 657 221 89 13 chrY 6981919 6982032 -17731047 - AluJo SINE Alu -171 141 11 207 0 0 0 chrY 6982309 6982332 -17730747 + (TA)n Simple_repeat Simple_repeat 1 23 0 360 94 0 0 chrY 6984265 6984318 -17728761 + (TCC)n Simple_repeat Simple_repeat 1 53 0 1684 49 0 0 chrY 6985425 6985630 -17727449 - L1PA2 LINE L1 0 6155 5951 2223 92 9 3 chrY 6985631 6985947 -17727132 - L1PA6 LINE L1 0 6154 5837 756 71 20 0 chrY 6985947 6986046 -17727033 + L1P3 LINE L1 5432 5532 -622 313 263 75 38 chrY 6991298 6991431 -17721648 + MLT1F LTR MaLR 370 507 -35 865 226 5 0 chrY 6991933 6992119 -17720960 + AluSg/x SINE Alu 123 309 -1 1168 196 3 93 chrY 6992159 6992470 -17720609 + AluSg SINE Alu 5 287 -13 183 188 0 0 chrY 6992483 6992531 -17720548 + GA-rich Low_complexity Low_complexity 2 49 0 285 177 11 0 chrY 6992552 6992617 -17720462 - L1MA4 LINE L1 -11 6289 6223 499 279 35 0 chrY 6992619 6992791 -17720288 + L1MA4 LINE L1 5999 6176 -124 230 167 0 121 chrY 6992808 6992838 -17720241 + L1MA3 LINE L1 6152 6171 -134 1260 230 10 30 chrY 6992838 6993142 -17719937 + AluJo SINE Alu 2 299 -13 230 167 0 121 chrY 6993142 6993177 -17719902 + L1MA3 LINE L1 6171 6209 -96 1504 191 4 14 chrY 6993218 6993496 -17719583 - AluSx SINE Alu -35 277 3 257 201 87 57 chrY 6995421 6995624 -17717455 + L1P1 LINE L1 5257 5471 -684 301 91 0 0 chrY 6995627 6995671 -17717408 - L1PA6 LINE L1 -5 6149 6106 512 222 67 39 chrY 6995687 6995867 -17717212 + L1M4 LINE L1 5417 5601 -573 368 213 24 37 chrY 6996021 6996170 -17716909 + L1M4 LINE L1 5284 5423 -755 298 146 0 0 chrY 6996170 6996218 -17716861 - L1PA6 LINE L1 -1 6153 6106 545 225 60 33 chrY 6996232 6996414 -17716665 + L1M4 LINE L1 5415 5601 -577 721 181 33 106 chrY 6996599 6996713 -17716366 + L1M4 LINE L1 5306 5427 -757 309 125 0 0 chrY 6996713 6996761 -17716318 - L1PA6 LINE L1 -1 6153 6106 721 181 33 106 chrY 6996761 6996952 -17716127 + L1M4 LINE L1 5427 5601 -583 322 231 175 7 chrY 6997112 6997255 -17715824 + L1MB5 LINE L1 5254 5420 -746 298 143 0 0 chrY 6997256 6997305 -17715774 - L1PA6 LINE L1 0 6154 6106 1208 254 117 34 chrY 6997319 6997994 -17715085 + L1MB5 LINE L1 5415 6161 -13 805 248 26 26 chrY 6999447 6999677 -17713402 + AluJo SINE Alu 1 230 -82 21 0 0 0 chrY 7000892 7000913 -17712166 + AT_rich Low_complexity Low_complexity 1 21 0 1665 176 0 10 chrY 7001190 7001491 -17711588 - AluSg SINE Alu -12 298 1 1852 142 7 3 chrY 7003492 7003794 -17709285 + AluSc SINE Alu 1 303 -6 207 178 89 0 chrY 7003960 7004005 -17709074 - L2 LINE L2 -12 3260 3212 1838 147 0 26 chrY 7004271 7004584 -17708495 - AluSc SINE Alu -3 306 2 23 78 0 0 chrY 7005872 7005923 -17707156 + AT_rich Low_complexity Low_complexity 1 51 0 324 48 0 0 chrY 7005952 7005994 -17707085 + (CA)n Simple_repeat Simple_repeat 2 43 0 285 149 231 67 chrY 7006436 7006468 -17706611 - L1MA7 LINE L1 -33 6258 6233 865 236 80 22 chrY 7006468 7006744 -17706335 - AluJb SINE Alu -9 293 2 285 149 231 67 chrY 7006744 7006845 -17706234 - L1MA7 LINE L1 -58 6233 6103 382 147 0 44 chrY 7006935 7007003 -17706076 + MER1B DNA MER1_type 211 275 -64 324 182 0 0 chrY 7007160 7007215 -17705864 + MER1B DNA MER1_type 263 317 -16 496 241 9 0 chrY 7007225 7007333 -17705746 - FLAM_C SINE Alu -32 111 3 1825 148 0 0 chrY 7011888 7012171 -17700908 + AluSq SINE Alu 1 283 -30 305 300 136 39 chrY 7012890 7013170 -17699909 + L2 LINE L2 2196 2502 -812 201 315 27 27 chrY 7014433 7014506 -17698573 - MER5A DNA MER1_type -74 115 43 231 340 38 0 chrY 7014965 7015124 -17697955 + L1M3 LINE L1 5353 5517 -654 23 0 0 0 chrY 7015249 7015272 -17697807 + AT_rich Low_complexity Low_complexity 1 23 0 27 29 0 0 chrY 7015892 7015926 -17697153 + AT_rich Low_complexity Low_complexity 1 34 0 198 0 0 0 chrY 7019742 7019764 -17693315 + (CAGCC)n Simple_repeat Simple_repeat 1 22 0 183 167 0 0 chrY 7020969 7021011 -17692068 + (TGG)n Simple_repeat Simple_repeat 1 42 0 417 90 0 0 chrY 7023537 7023604 -17689475 + (TG)n Simple_repeat Simple_repeat 2 68 0 221 203 0 47 chrY 7025888 7025952 -17687127 + CT-rich Low_complexity Low_complexity 1 61 0 356 323 104 10 chrY 7026061 7026253 -17686826 - L1M4c LINE L1 -5025 1359 1150 828 253 27 54 chrY 7026262 7026558 -17686521 - AluJb SINE Alu -12 300 13 310 311 39 0 chrY 7026671 7026774 -17686305 - L1MCa LINE L1 -4325 2101 1995 * 343 277 0 43 chrY 7026722 7026816 -17686263 + L1MC4 LINE L1 6614 6703 -1339 323 284 42 32 chrY 7026751 7026846 -17686233 - L1MC4 LINE L1 -1333 6709 6614 * 22 0 0 0 chrY 7026944 7026966 -17686113 + AT_rich Low_complexity Low_complexity 1 22 0 2144 262 55 56 chrY 7027024 7028743 -17684336 - L1MA8 LINE L1 -23 6268 4559 27 73 0 0 chrY 7030688 7030743 -17682336 + AT_rich Low_complexity Low_complexity 1 55 0 21 71 0 0 chrY 7031092 7031134 -17681945 + AT_rich Low_complexity Low_complexity 1 42 0 254 251 70 107 chrY 7032181 7032319 -17680760 + L2 LINE L2 2279 2410 -904 1470 223 7 7 chrY 7032319 7032615 -17680464 + AluSx SINE Alu 3 298 -4 254 251 70 107 chrY 7032615 7032663 -17680416 + L2 LINE L2 2410 2458 -856 1284 148 68 30 chrY 7032664 7032927 -17680152 + AluSx SINE Alu 1 273 -39 2311 136 6 0 chrY 7033075 7033428 -17679651 - THE1A LTR MaLR 0 355 1 331 252 56 56 chrY 7033911 7034054 -17679025 - L1MA8 LINE L1 -2410 3736 3594 348 191 16 40 chrY 7034194 7034320 -17678759 + (TA)n Simple_repeat Simple_repeat 1 123 0 661 288 73 74 chrY 7034323 7034828 -17678251 - L1M4 LINE L1 -2739 3407 2850 401 153 56 0 chrY 7034872 7034944 -17678135 + AluSc SINE Alu 192 267 -42 234 0 0 0 chrY 7034956 7034982 -17678097 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 1253 189 27 34 chrY 7036257 7036527 -17676552 + AluSg SINE Alu 6 275 -35 192 77 0 0 chrY 7036527 7036553 -17676526 + (CA)n Simple_repeat Simple_repeat 2 27 0 1253 189 27 34 chrY 7036553 7036579 -17676500 + AluSg SINE Alu 275 300 -10 27 0 0 0 chrY 7040018 7040045 -17673034 + AT_rich Low_complexity Low_complexity 1 27 0 1289 109 0 88 chrY 7040451 7040689 -17672390 - AluSg/x SINE Alu -2 310 94 200 139 0 23 chrY 7041119 7041162 -17671917 + (TTTC)n Simple_repeat Simple_repeat 4 45 0 2460 132 19 8 chrY 7041646 7042017 -17671062 - THE1C LTR MaLR 0 375 1 1251 72 6 6 chrY 7042017 7042184 -17670895 - THE1C-int LTR MaLR 0 1580 1414 9612 178 18 15 chrY 7043858 7045849 -17667230 - L1 LINE L1 -925 5221 3225 241 222 0 28 chrY 7046999 7047071 -17666008 + (TA)n Simple_repeat Simple_repeat 1 70 0 2054 129 0 0 chrY 7047480 7047774 -17665305 + AluSg SINE Alu 1 294 -16 350 233 105 0 chrY 7048392 7048478 -17664601 - MER5B DNA MER1_type -1 177 83 216 0 0 0 chrY 7048809 7048833 -17664246 + (A)n Simple_repeat Simple_repeat 1 24 0 409 234 72 0 chrY 7049193 7049304 -17663775 + MIR SINE MIR 118 236 -26 2217 105 0 0 chrY 7049350 7049645 -17663434 - AluSx SINE Alu -17 295 1 419 212 8 61 chrY 7050522 7050626 -17662453 + AluSg/x SINE Alu 183 280 -30 291 28 0 0 chrY 7050626 7050662 -17662417 + (CA)n Simple_repeat Simple_repeat 2 37 0 419 212 8 61 chrY 7050662 7050689 -17662390 + AluSg/x SINE Alu 280 307 -3 369 0 0 0 chrY 7050731 7050772 -17662307 + (CA)n Simple_repeat Simple_repeat 2 42 0 186 156 0 0 chrY 7057870 7057915 -17655164 + (TG)n Simple_repeat Simple_repeat 2 46 0 301 319 34 17 chrY 7061012 7061131 -17651948 - L1M4c LINE L1 -5019 1365 1245 843 259 57 8 chrY 7061238 7061383 -17651696 - AluJb SINE Alu -36 276 140 252 0 0 0 chrY 7061383 7061411 -17651668 + (TTAA)n Simple_repeat Simple_repeat 2 29 0 843 259 57 8 chrY 7061411 7061528 -17651551 - AluJb SINE Alu -172 140 1 2229 255 66 39 chrY 7061838 7062669 -17650410 - L1MA8 LINE L1 -3 6288 5481 207 0 0 0 chrY 7062669 7062692 -17650387 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2229 255 66 39 chrY 7062692 7063550 -17649529 - L1MA8 LINE L1 -810 5481 4559 182 255 40 114 chrY 7067026 7067130 -17645949 + L2 LINE L2 2321 2412 -902 1961 171 0 0 chrY 7067130 7067434 -17645645 + AluSx SINE Alu 1 304 -8 182 255 40 114 chrY 7067434 7067478 -17645601 + L2 LINE L2 2412 2458 -856 1552 149 58 45 chrY 7067479 7067787 -17645292 + AluSx SINE Alu 1 312 0 2364 128 8 0 chrY 7067893 7068245 -17644834 - THE1A LTR MaLR 0 355 1 362 252 49 49 chrY 7068730 7068873 -17644206 - L1MA8 LINE L1 -2410 3736 3594 275 284 63 36 chrY 7068945 7069248 -17643831 - L1M4 LINE L1 -2660 3486 3176 1388 302 36 32 chrY 7069509 7070021 -17643058 - HAL1 LINE L1 -486 2021 1503 2032 116 3 63 chrY 7070021 7070340 -17642739 - AluSp SINE Alu -13 300 1 1388 302 36 32 chrY 7070340 7070629 -17642450 - HAL1 LINE L1 -1004 1503 1217 206 244 128 26 chrY 7070908 7070986 -17642093 - L2 LINE L2 -50 3222 3137 1778 150 0 4 chrY 7071021 7071325 -17641754 + AluSc SINE Alu 7 309 0 499 324 6 39 chrY 7071592 7071774 -17641305 + MER5B DNA MER1_type 2 177 -1 1856 149 4 0 chrY 7071869 7072186 -17640893 - AluSg SINE Alu 0 318 1 23 33 0 0 chrY 7072189 7072219 -17640860 + AT_rich Low_complexity Low_complexity 1 30 0 1480 170 3 63 chrY 7072222 7072522 -17640557 + AluJb SINE Alu 2 283 -29 261 0 0 0 chrY 7072530 7072559 -17640520 + (TG)n Simple_repeat Simple_repeat 2 30 0 399 127 0 0 chrY 7072559 7072622 -17640457 + (CATATA)n Simple_repeat Simple_repeat 4 66 0 321 26 0 0 chrY 7072645 7072683 -17640396 + (CA)n Simple_repeat Simple_repeat 1 38 0 189 0 0 0 chrY 7072899 7072920 -17640159 + (T)n Simple_repeat Simple_repeat 1 21 0 21 36 0 0 chrY 7073811 7073839 -17639240 + AT_rich Low_complexity Low_complexity 1 28 0 379 268 178 13 chrY 7073882 7074039 -17639040 - L2 LINE L2 -13 3300 3118 359 320 140 30 chrY 7074230 7074602 -17638477 - L2 LINE L2 -1310 2004 1592 745 308 82 6 chrY 7076983 7077301 -17635778 + MER93a LTR ERV1 61 402 0 657 257 123 62 chrY 7077330 7077704 -17635375 + Charlie2 DNA MER1_type 1864 2260 -602 22340 74 6 4 chrY 7077704 7080851 -17632228 - L1PA4 LINE L1 -2906 3240 89 16865 50 2 2 chrY 7080851 7083768 -17629311 + L1PA4 LINE L1 3240 6155 0 1899 154 10 0 chrY 7083773 7083792 -17629287 - AluSp SINE Alu -11 302 285 306 0 0 0 chrY 7083792 7083826 -17629253 + (TG)n Simple_repeat Simple_repeat 1 34 0 1899 154 10 0 chrY 7083826 7084098 -17628981 - AluSp SINE Alu -28 285 8 349 296 22 22 chrY 7084228 7084363 -17628716 + L1ME4a LINE L1 5971 6105 -16 1252 304 96 64 chrY 7085774 7086120 -17626959 - L2 LINE L2 -1177 2137 1804 1302 137 152 41 chrY 7086120 7086390 -17626689 - AluSg SINE Alu 0 300 1 1252 304 96 64 chrY 7086390 7086978 -17626101 - L2 LINE L2 -1510 1804 1173 309 26 0 0 chrY 7087625 7087663 -17625416 + (TG)n Simple_repeat Simple_repeat 1 38 0 722 306 24 5 chrY 7087749 7087955 -17625124 + MIR SINE MIR 1 210 -52 213 233 41 55 chrY 7087953 7088026 -17625053 + MIR SINE MIR 70 141 -67 * 1760 152 7 42 chrY 7088229 7088538 -17624541 + AluSg SINE Alu 1 298 -12 197 246 168 54 chrY 7088722 7088889 -17624190 + L2 LINE L2 3126 3311 -2 186 43 0 0 chrY 7089204 7089227 -17623852 + (CA)n Simple_repeat Simple_repeat 2 24 0 474 18 0 0 chrY 7089524 7089579 -17623500 + (TTA)n Simple_repeat Simple_repeat 2 56 0 251 341 65 0 chrY 7090172 7090295 -17622784 - MIR SINE MIR -71 191 61 1303 182 17 14 chrY 7090472 7090763 -17622316 + L1MA8 LINE L1 5998 6289 -2 2427 209 69 27 chrY 7090839 7091422 -17621657 - MER90 LTR ERV1 -7 607 1 467 302 126 28 chrY 7091809 7092185 -17620894 + L1MC4a LINE L1 5502 5818 -303 237 184 11 23 chrY 7092200 7092211 -17620868 + (TA)n Simple_repeat Simple_repeat 2 12 -75 1629 201 3 10 chrY 7092211 7092499 -17620580 + AluJb SINE Alu 1 286 -26 237 184 11 23 chrY 7092499 7092574 -17620505 + (TA)n Simple_repeat Simple_repeat 12 87 0 2116 276 55 41 chrY 7092796 7093719 -17619360 + L1MEc LINE L1 46 987 -5409 1728 147 48 0 chrY 7093719 7094012 -17619067 + AluY SINE Alu 1 307 -4 2116 276 55 41 chrY 7094012 7094139 -17618940 + L1MEc LINE L1 987 1111 -5285 995 225 38 86 chrY 7094154 7094549 -17618530 + MLT1B LTR MaLR 11 386 -4 3625 255 55 32 chrY 7094619 7095349 -17617730 + L1MEc LINE L1 2384 3096 -3119 1637 180 7 0 chrY 7095349 7095621 -17617458 + AluSx SINE Alu 1 274 -38 3625 255 55 32 chrY 7095621 7096701 -17616378 + L1MEc LINE L1 3096 4236 -1979 5438 72 5 11 chrY 7096710 7097556 -17615523 + L1PA3 LINE L1 1 969 -5177 3934 19 0 0 chrY 7097552 7098038 -17615041 - L1HS LINE L1 -821 5325 4840 * 7091 9 0 2 chrY 7098036 7098880 -17614199 + L1HS LINE L1 5314 6155 0 13653 54 20 1 chrY 7099059 7100941 -17612138 + L1PA3 LINE L1 936 2854 -3292 17562 42 6 1 chrY 7100948 7103944 -17609135 + L1PA3 LINE L1 3170 6155 0 395 269 78 13 chrY 7103953 7104261 -17608818 + L1MEc LINE L1 4250 4577 -1638 1117 278 56 24 chrY 7104367 7104954 -17608125 + L1MEc LINE L1 4595 5200 -1015 937 215 76 95 chrY 7104968 7105336 -17607743 - MLT1A1 LTR MaLR -4 361 1 2075 265 73 21 chrY 7105337 7105994 -17607085 - MLT1A1-int LTR MaLR -1 1734 1044 1597 144 92 50 chrY 7106029 7106192 -17606887 + THE1C LTR MaLR 1 156 -219 2388 133 19 0 chrY 7106192 7106560 -17606519 + THE1C LTR MaLR 1 375 0 1597 144 92 50 chrY 7106560 7106756 -17606323 + THE1C LTR MaLR 156 375 0 824 246 16 47 chrY 7106756 7107023 -17606056 - MLT1A1-int LTR MaLR -645 1006 759 3502 196 26 32 chrY 7107064 7107486 -17605593 - MLT1A1-int LTR MaLR -933 802 386 2438 80 0 3 chrY 7107486 7107798 -17605281 - AluY SINE Alu 0 311 1 3502 196 26 32 chrY 7107798 7108181 -17604898 - MLT1A1-int LTR MaLR -1349 386 2 346 293 9 0 chrY 7108223 7108329 -17604750 - MLT1A2 LTR MaLR -72 302 196 612 297 206 17 chrY 7108372 7108732 -17604347 + L2 LINE L2 2880 3307 -6 433 116 72 7 chrY 7109186 7109324 -17603755 + (TA)n Simple_repeat Simple_repeat 1 147 0 1467 161 65 8 chrY 7109434 7109694 -17603385 + AluSg SINE Alu 1 275 -35 1738 158 7 27 chrY 7109798 7110095 -17602984 - AluJb SINE Alu -21 291 1 4038 55 0 0 chrY 7110467 7110973 -17602106 - L1PA3 LINE L1 -3 6152 5647 1895 169 0 3 chrY 7111323 7111625 -17601454 + AluSg SINE Alu 1 301 -9 301 340 44 50 chrY 7111871 7112030 -17601049 - MIR3 SINE MIR -49 159 2 365 329 112 38 chrY 7112541 7112854 -17600225 + L3 LINE CR1 715 1050 -527 531 246 29 41 chrY 7112861 7113032 -17600047 + MIR SINE MIR 94 262 0 654 344 120 41 chrY 7113037 7113522 -17599557 + L3 LINE CR1 1054 1576 -1 2080 147 3 0 chrY 7113794 7114106 -17598973 + AluSp SINE Alu 1 313 0 1977 157 0 10 chrY 7114167 7114472 -17598607 + AluSx SINE Alu 1 302 -10 28 29 0 0 chrY 7114998 7115033 -17598046 + AT_rich Low_complexity Low_complexity 1 35 0 505 238 47 12 chrY 7115098 7115270 -17597809 + L1MA4 LINE L1 5999 6176 -124 1146 234 13 57 chrY 7115283 7115582 -17597497 + AluJo SINE Alu 14 299 -13 1400 201 36 14 chrY 7115643 7115922 -17597157 - AluSx SINE Alu -25 287 3 1447 182 37 4 chrY 7116413 7116682 -17596397 + AluSg SINE Alu 12 289 -21 1089 197 112 22 chrY 7118604 7119005 -17594074 + L1MB5 LINE L1 5254 5690 -490 794 244 23 18 chrY 7119121 7119404 -17593675 + L1MB5 LINE L1 5905 6184 0 252 0 0 0 chrY 7120632 7120660 -17592419 + (TTA)n Simple_repeat Simple_repeat 3 30 0 4018 47 0 8 chrY 7120660 7121155 -17591924 - L1PA3 LINE L1 -18 6137 5647 28 0 0 0 chrY 7121263 7121291 -17591788 + AT_rich Low_complexity Low_complexity 1 28 0 801 288 33 25 chrY 7121398 7121672 -17591407 + AluJo SINE Alu 1 276 -36 26 0 0 0 chrY 7122788 7122814 -17590265 + AT_rich Low_complexity Low_complexity 1 26 0 1694 189 0 3 chrY 7123090 7123397 -17589682 - AluSg SINE Alu 0 310 5 181 353 94 0 chrY 7125133 7125218 -17587861 + L2 LINE L2 2909 3001 -312 1759 150 11 4 chrY 7125379 7125686 -17587393 + AluSc SINE Alu 1 309 0 2023 131 0 7 chrY 7125851 7126149 -17586930 + AluY SINE Alu 1 296 -15 1735 171 7 7 chrY 7126488 7126780 -17586299 - AluSc SINE Alu -17 292 1 22 70 0 0 chrY 7128056 7128099 -17584980 + AT_rich Low_complexity Low_complexity 1 43 0 225 0 0 0 chrY 7128124 7128149 -17584930 + (CA)n Simple_repeat Simple_repeat 2 26 0 21 57 0 0 chrY 7128286 7128321 -17584758 + AT_rich Low_complexity Low_complexity 1 35 0 254 125 243 97 chrY 7128591 7128627 -17584452 - L1MA7 LINE L1 -29 6262 6233 656 241 130 11 chrY 7128627 7128771 -17584308 - AluJb SINE Alu -8 294 168 333 0 0 0 chrY 7128771 7128808 -17584271 + (TG)n Simple_repeat Simple_repeat 2 38 0 656 241 130 11 chrY 7128808 7128924 -17584155 - AluJb SINE Alu -134 168 3 254 125 243 97 chrY 7128924 7129031 -17584048 - L1MA7 LINE L1 -58 6233 6098 306 206 0 44 chrY 7129116 7129184 -17583895 + MER1B DNA MER1_type 211 275 -64 225 254 0 0 chrY 7129344 7129399 -17583680 + MER1B DNA MER1_type 266 320 -13 456 242 0 0 chrY 7129420 7129519 -17583560 - AluJ/FLAM SINE Alu -211 101 3 315 288 99 101 chrY 7130938 7131762 -17581317 - L1M2a LINE L1 -5490 1678 1185 279 0 0 0 chrY 7134525 7134556 -17578523 + (TG)n Simple_repeat Simple_repeat 2 32 0 1706 189 0 0 chrY 7134556 7134841 -17578238 - AluSx SINE Alu -27 285 1 23 0 0 0 chrY 7134910 7134933 -17578146 + AT_rich Low_complexity Low_complexity 1 23 0 1673 178 4 0 chrY 7135150 7135420 -17577659 + AluSq SINE Alu 13 283 -30 409 314 125 29 chrY 7136141 7136421 -17576658 + L2 LINE L2 2196 2502 -812 315 0 0 0 chrY 7137521 7137556 -17575523 + (TG)n Simple_repeat Simple_repeat 2 36 0 255 224 0 0 chrY 7137556 7137623 -17575456 + T-rich Low_complexity Low_complexity 1 67 0 205 311 27 27 chrY 7137706 7137780 -17575299 - MER5A DNA MER1_type -73 116 43 271 269 69 34 chrY 7138225 7138400 -17574679 + L1M2 LINE L1 5340 5520 -780 34 24 0 0 chrY 7140469 7140510 -17572569 + AT_rich Low_complexity Low_complexity 1 41 0 22 0 0 0 chrY 7140788 7140810 -17572269 + AT_rich Low_complexity Low_complexity 1 22 0 7288 39 11 0 chrY 7140989 7141921 -17571158 - L1PA4 LINE L1 -1 6154 5215 13158 38 1 0 chrY 7141921 7143593 -17569486 + L1PA4 LINE L1 3555 5228 -918 3217 173 35 54 chrY 7143607 7144423 -17568656 + L1PA16 LINE L1 5357 6157 -9 21 36 0 0 chrY 7145379 7145407 -17567672 + AT_rich Low_complexity Low_complexity 1 28 0 1609 182 26 0 chrY 7149944 7150213 -17562866 - AluSx SINE Alu -30 282 7 1155 248 3 18 chrY 7150223 7150509 -17562570 - AluJo SINE Alu -23 289 8 1762 92 11 8 chrY 7151194 7151511 -17561568 - L1PA5 LINE L1 -580 5574 5328 4116 86 2 9 chrY 7151511 7152076 -17561003 + L1PA5 LINE L1 5586 6154 0 876 250 68 0 chrY 7155057 7155249 -17557830 + AluJb SINE Alu 78 282 -30 303 28 0 0 chrY 7155274 7155310 -17557769 + (CA)n Simple_repeat Simple_repeat 1 36 0 33 43 0 0 chrY 7155758 7155805 -17557274 + AT_rich Low_complexity Low_complexity 1 47 0 239 286 6 57 chrY 7156426 7156601 -17556478 + GA-rich Low_complexity Low_complexity 1 166 0 1100 95 14 0 chrY 7161229 7161377 -17551702 + MER11B LTR ERVK 1 150 -1086 6408 102 14 24 chrY 7161453 7161474 -17551605 + MER11C LTR ERVK 101 121 -950 6630 29 9 0 chrY 7161474 7162209 -17550870 - L1PA2 LINE L1 -5 6150 5409 6408 102 14 24 chrY 7162209 7163153 -17549926 + MER11C LTR ERVK 121 1057 -14 230 257 68 0 chrY 7166203 7166351 -17546728 + (TA)n Simple_repeat Simple_repeat 2 159 0 31 0 0 0 chrY 7166378 7166409 -17546670 + AT_rich Low_complexity Low_complexity 1 31 0 10622 139 45 9 chrY 7166711 7168548 -17544531 + L1PA7 LINE L1 2706 4608 -1538 1602 95 9 3 chrY 7168560 7169393 -17543686 + L1PA7 LINE L1 5231 6150 -4 283 239 49 7 chrY 7169393 7169535 -17543544 + (TA)n Simple_repeat Simple_repeat 1 148 0 184 259 86 0 chrY 7169859 7169917 -17543162 + L2 LINE L2 2548 2610 -704 3172 38 18 0 chrY 7170204 7170598 -17542481 - L1PA4 LINE L1 -1445 4701 4301 7455 54 3 16 chrY 7170598 7172076 -17541003 + L1PA4 LINE L1 4687 6153 -2 21 36 0 0 chrY 7173102 7173130 -17539949 + AT_rich Low_complexity Low_complexity 1 28 0 504 45 0 0 chrY 7173142 7173209 -17539870 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 1390 228 0 3 chrY 7173215 7173518 -17539561 + AluSg SINE Alu 1 302 -8 35 24 0 0 chrY 7173779 7173821 -17539258 + AT_rich Low_complexity Low_complexity 1 42 0 1002 292 29 18 chrY 7174326 7174607 -17538472 - AluJo SINE Alu -18 284 1 27 0 0 0 chrY 7174715 7174742 -17538337 + AT_rich Low_complexity Low_complexity 1 27 0 687 253 34 34 chrY 7176028 7176206 -17536873 - AluJb SINE Alu -133 179 2 422 277 39 0 chrY 7176207 7176361 -17536718 - L1MA4 LINE L1 -124 6176 6013 687 143 0 0 chrY 7176374 7176472 -17536607 - AluS SINE Alu -213 99 2 1452 118 5 0 chrY 7176529 7176732 -17536347 - AluSp SINE Alu -8 305 102 1322 254 3 17 chrY 7177034 7177322 -17535757 + AluSx SINE Alu 3 286 -16 1208 269 3 29 chrY 7177384 7177693 -17535386 - AluJo SINE Alu 0 302 2 3509 140 283 0 chrY 7177697 7177918 -17535161 - LTR12 LTR ERV1 0 826 669 2872 7 0 0 chrY 7177918 7178224 -17534855 - AluY SINE Alu -5 306 1 3509 140 283 0 chrY 7178224 7178646 -17534433 - LTR12 LTR ERV1 -157 669 1 3681 132 74 0 chrY 7178649 7179227 -17533852 - HERV9 LTR ERV1 -21 8378 7758 1767 159 19 34 chrY 7179223 7180240 -17532839 - HERV17 LTR ERV1 -5176 1720 706 * 5748 130 6 10 chrY 7180241 7181110 -17531969 - HERV17 LTR ERV1 -3455 4944 4080 20153 126 29 47 chrY 7181117 7184646 -17528433 - HERV17 LTR ERV1 -236 478 43 229 250 0 0 chrY 7184653 7184701 -17528378 - LTR30 LTR ERV1 -673 49 2 288 333 19 74 chrY 7184701 7184855 -17528224 + L1M3de LINE L1 473 613 -6040 1978 148 3 3 chrY 7184855 7185159 -17527920 - AluSx SINE Alu -8 304 1 288 333 19 74 chrY 7185159 7185220 -17527859 + L1M3de LINE L1 613 676 -5977 1305 234 40 64 chrY 7185494 7185917 -17527162 + MSTB LTR MaLR 1 413 -13 1607 203 0 13 chrY 7186125 7186436 -17526643 - AluY SINE Alu -3 308 2 602 350 61 34 chrY 7186524 7186967 -17526112 + L1M3b LINE L1 56 510 -5771 261 0 0 0 chrY 7187981 7188010 -17525069 + (CA)n Simple_repeat Simple_repeat 2 30 0 451 243 7 112 chrY 7188254 7188406 -17524673 + FLAM_C SINE Alu 2 137 -6 226 194 0 0 chrY 7189070 7189106 -17523973 + polypyrimidine Low_complexity Low_complexity 1 36 0 943 134 11 11 chrY 7189106 7189285 -17523794 + CT-rich Low_complexity Low_complexity 1 179 0 1415 237 0 17 chrY 7189311 7189602 -17523477 - AluSx SINE Alu -16 286 1 1238 248 3 3 chrY 7189642 7189953 -17523126 - AluSx SINE Alu -1 311 1 311 270 56 24 chrY 7190418 7190544 -17522535 - MLT1F LTR MaLR -27 515 386 573 15 0 0 chrY 7191373 7191439 -17521640 + (TCTA)n Simple_repeat Simple_repeat 1 66 0 27 62 0 0 chrY 7191445 7191493 -17521586 + AT_rich Low_complexity Low_complexity 1 48 0 25 0 0 0 chrY 7191761 7191786 -17521293 + AT_rich Low_complexity Low_complexity 1 25 0 24 32 0 0 chrY 7191975 7192006 -17521073 + AT_rich Low_complexity Low_complexity 1 31 0 308 267 22 22 chrY 7193391 7193481 -17519598 - L1MC4 LINE L1 -1339 6703 6614 252 235 0 0 chrY 7193482 7193533 -17519546 - MER4-int LTR ERV1 -5437 1161 1111 223 121 0 55 chrY 7193601 7193692 -17519387 + (TA)n Simple_repeat Simple_repeat 1 86 0 520 253 181 48 chrY 7193973 7194222 -17518857 + AluJo SINE Alu 11 292 -10 23 33 0 0 chrY 7194370 7194400 -17518679 + AT_rich Low_complexity Low_complexity 1 30 0 249 286 91 0 chrY 7195155 7195232 -17517847 + LTR33A LTR ERVL 102 185 -338 636 165 8 25 chrY 7195397 7195518 -17517561 + LTR1 LTR ERV1 1 119 -666 2329 190 35 53 chrY 7195523 7196127 -17516952 + LTR1 LTR ERV1 89 681 -104 225 319 79 75 chrY 7197016 7197521 -17515558 + SST1 Satellite centromeric 94 600 -963 180 167 0 0 chrY 7198422 7198470 -17514609 + (TG)n Simple_repeat Simple_repeat 1 48 0 497 304 66 33 chrY 7199500 7199895 -17513184 + SST1 Satellite centromeric 117 524 -1039 273 29 0 0 chrY 7200618 7200652 -17512427 + (TG)n Simple_repeat Simple_repeat 2 35 0 28 0 0 0 chrY 7200916 7200944 -17512135 + AT_rich Low_complexity Low_complexity 1 28 0 381 331 50 41 chrY 7201494 7201953 -17511126 + SST1 Satellite centromeric 139 601 -962 350 300 74 74 chrY 7202761 7203151 -17509928 + SST1 Satellite centromeric 1163 1552 -11 342 276 58 46 chrY 7205893 7206067 -17507012 + SST1 Satellite centromeric 349 524 -1039 230 326 11 11 chrY 7206624 7206716 -17506363 + SST1 Satellite centromeric 1148 1239 -324 185 83 28 0 chrY 7207077 7207113 -17505966 + (TG)n Simple_repeat Simple_repeat 1 37 0 283 317 50 50 chrY 7208201 7208599 -17504480 + SST1 Satellite centromeric 207 604 -959 310 309 77 77 chrY 7209077 7209482 -17503597 + SST1 Satellite centromeric 1148 1552 -11 339 149 0 0 chrY 7209506 7209580 -17503499 + (TG)n Simple_repeat Simple_repeat 1 74 0 33 25 0 0 chrY 7210422 7210462 -17502617 + AT_rich Low_complexity Low_complexity 1 40 0 6451 25 0 0 chrY 7210527 7211263 -17501816 - L1PA2 LINE L1 -8 6147 5412 222 62 0 0 chrY 7211429 7211461 -17501618 + (TG)n Simple_repeat Simple_repeat 1 32 0 195 42 0 0 chrY 7211584 7211608 -17501471 + (TTTC)n Simple_repeat Simple_repeat 2 25 0 195 42 0 0 chrY 7211679 7211703 -17501376 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 289 292 78 41 chrY 7212075 7212318 -17500761 + SST1 Satellite centromeric 29 280 -1283 245 290 103 19 chrY 7213347 7213502 -17499577 + SST1 Satellite centromeric 1385 1552 -11 180 97 0 0 chrY 7213526 7213557 -17499522 + (TG)n Simple_repeat Simple_repeat 2 32 0 362 295 80 66 chrY 7214571 7215083 -17497996 + SST1 Satellite centromeric 83 601 -962 542 306 66 46 chrY 7216971 7217425 -17495654 + SST1 Satellite centromeric 138 600 -963 230 287 85 60 chrY 7219380 7219697 -17493382 + SST1 Satellite centromeric 137 461 -1102 277 283 97 48 chrY 7220535 7220680 -17492399 + SST1 Satellite centromeric 1387 1538 -25 247 250 22 0 chrY 7220683 7220775 -17492304 + (TG)n Simple_repeat Simple_repeat 1 94 0 232 303 92 60 chrY 7221823 7222074 -17491005 + SST1 Satellite centromeric 138 396 -1167 263 319 60 57 chrY 7223350 7223598 -17489481 + SST1 Satellite centromeric 352 600 -963 285 214 20 10 chrY 7224442 7224540 -17488539 + (TG)n Simple_repeat Simple_repeat 2 100 0 186 71 0 0 chrY 7224764 7224792 -17488287 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 374 296 68 52 chrY 7225280 7225530 -17487549 + SST1 Satellite centromeric 349 602 -961 234 107 27 53 chrY 7226395 7226470 -17486609 + (TG)n Simple_repeat Simple_repeat 1 73 0 266 354 51 38 chrY 7227416 7227945 -17485134 + SST1 Satellite centromeric 66 601 -962 318 26 0 0 chrY 7228874 7228913 -17484166 + (TG)n Simple_repeat Simple_repeat 1 39 0 227 338 0 0 chrY 7230880 7230957 -17482122 + SST1 Satellite centromeric 1148 1224 -339 195 42 0 0 chrY 7233699 7233723 -17479356 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 203 111 0 74 chrY 7233892 7233946 -17479133 + (TG)n Simple_repeat Simple_repeat 1 50 0 262 282 32 40 chrY 7234987 7235111 -17477968 + SST1 Satellite centromeric 138 260 -1303 231 284 14 14 chrY 7235894 7235968 -17477111 + SST1 Satellite centromeric 1156 1229 -334 180 179 0 0 chrY 7236345 7236384 -17476695 + (TG)n Simple_repeat Simple_repeat 1 39 0 1542 40 0 0 chrY 7237926 7238127 -17474952 - L1PA4 LINE L1 -2962 3184 2984 17734 46 6 1 chrY 7238127 7241085 -17471994 + L1PA4 LINE L1 3189 6154 -1 294 87 0 0 chrY 7241247 7241293 -17471786 + (TG)n Simple_repeat Simple_repeat 1 46 0 267 307 93 85 chrY 7243223 7243601 -17469478 + SST1 Satellite centromeric 1156 1536 -27 196 161 32 0 chrY 7243640 7243702 -17469377 + (TG)n Simple_repeat Simple_repeat 1 64 0 215 100 50 0 chrY 7243909 7243949 -17469130 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 381 306 50 71 chrY 7244799 7245181 -17467898 + SST1 Satellite centromeric 227 600 -963 249 98 0 0 chrY 7246389 7246430 -17466649 + (A)n Simple_repeat Simple_repeat 1 41 0 340 314 64 54 chrY 7247301 7247693 -17465386 + SST1 Satellite centromeric 207 602 -961 234 143 0 0 chrY 7248610 7248659 -17464420 + (TG)n Simple_repeat Simple_repeat 2 50 0 250 244 22 0 chrY 7250249 7250339 -17462740 + (TG)n Simple_repeat Simple_repeat 1 92 0 381 319 55 40 chrY 7251446 7251775 -17461304 + SST1 Satellite centromeric 191 524 -1039 214 256 26 0 chrY 7252724 7252802 -17460277 + (TG)n Simple_repeat Simple_repeat 1 80 0 255 266 56 56 chrY 7253775 7253918 -17459161 + SST1 Satellite centromeric 138 280 -1283 268 234 21 0 chrY 7255016 7255110 -17457969 + (TG)n Simple_repeat Simple_repeat 1 96 0 234 272 47 70 chrY 7256338 7256551 -17456528 + SST1 Satellite centromeric 317 524 -1039 207 114 0 0 chrY 7257411 7257446 -17455633 + (TG)n Simple_repeat Simple_repeat 2 36 0 237 298 32 40 chrY 7258483 7258607 -17454472 + SST1 Satellite centromeric 138 260 -1303 284 268 14 0 chrY 7259419 7259490 -17453589 + SST1 Satellite centromeric 1156 1227 -336 2094 143 0 0 chrY 7264089 7264389 -17448690 - AluY SINE Alu -11 300 1 252 154 0 0 chrY 7265852 7265904 -17447175 + (TG)n Simple_repeat Simple_repeat 1 52 0 443 300 73 53 chrY 7266877 7267400 -17445679 + SST1 Satellite centromeric 66 598 -965 309 328 58 31 chrY 7269447 7269969 -17443110 + SST1 Satellite centromeric 66 601 -962 183 80 0 0 chrY 7272035 7272060 -17441019 + (T)n Simple_repeat Simple_repeat 1 25 0 299 328 48 40 chrY 7273244 7273619 -17439460 + SST1 Satellite centromeric 223 600 -963 202 146 18 18 chrY 7274526 7274581 -17438498 + (TG)n Simple_repeat Simple_repeat 2 56 0 180 77 0 0 chrY 7274698 7274724 -17438355 + (TG)n Simple_repeat Simple_repeat 1 26 0 198 0 0 0 chrY 7277096 7277118 -17435961 + (TG)n Simple_repeat Simple_repeat 1 22 0 238 330 0 0 chrY 7278970 7279064 -17434015 + SST1 Satellite centromeric 1146 1239 -324 231 61 0 0 chrY 7279423 7279456 -17433623 + (TG)n Simple_repeat Simple_repeat 2 34 0 921 256 3 36 chrY 7281742 7282103 -17430976 - LTR2 LTR ERV1 0 449 1 737 210 156 0 chrY 7282103 7282270 -17430809 - Harlequin LTR ERV1 -1 6895 6703 577 285 0 0 chrY 7282265 7282388 -17430691 - Harlequin LTR ERV1 -1307 5589 5467 * 3665 211 21 3 chrY 7282396 7283889 -17429190 - HERVE LTR ERV1 -1814 5999 4386 * 9468 182 31 21 chrY 7283888 7286197 -17426882 - HERVE LTR ERV1 -3719 4094 1684 182 279 139 0 chrY 7288102 7288181 -17424898 - L3 LINE CR1 -91 1486 1397 233 100 0 67 chrY 7289219 7289279 -17423800 + (TG)n Simple_repeat Simple_repeat 1 56 0 216 158 0 0 chrY 7289484 7289522 -17423557 + A-rich Low_complexity Low_complexity 1 38 0 200 189 40 14 chrY 7291698 7291772 -17421307 + (TG)n Simple_repeat Simple_repeat 2 77 0 2172 32 0 7 chrY 7292005 7292283 -17420796 - L1P LINE L1 -891 5255 4978 3644 68 2 4 chrY 7292283 7292417 -17420662 + L1PA3 LINE L1 5686 5819 -336 2285 85 0 10 chrY 7292417 7292710 -17420369 + AluY SINE Alu 9 298 -13 3644 68 2 4 chrY 7292710 7293045 -17420034 + L1PA3 LINE L1 5819 6155 0 22 0 0 0 chrY 7293325 7293347 -17419732 + AT_rich Low_complexity Low_complexity 1 22 0 254 60 0 80 chrY 7295253 7295303 -17417776 + (TG)n Simple_repeat Simple_repeat 2 47 0 229 286 13 13 chrY 7296064 7296141 -17416938 + SST1 Satellite centromeric 1163 1239 -324 225 250 0 0 chrY 7296474 7296534 -17416545 + (TG)n Simple_repeat Simple_repeat 1 60 0 23 0 0 0 chrY 7297043 7297066 -17416013 + AT_rich Low_complexity Low_complexity 1 23 0 225 164 33 16 chrY 7298588 7298649 -17414430 + (TG)n Simple_repeat Simple_repeat 1 62 0 231 315 0 14 chrY 7300635 7300708 -17412371 + SST1 Satellite centromeric 1156 1227 -336 208 184 20 20 chrY 7301052 7301101 -17411978 + (TG)n Simple_repeat Simple_repeat 2 50 0 243 247 25 0 chrY 7303471 7303552 -17409527 + (TG)n Simple_repeat Simple_repeat 1 83 0 234 0 0 0 chrY 7303761 7303787 -17409292 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 251 315 56 48 chrY 7304849 7305100 -17407979 + SST1 Satellite centromeric 349 601 -962 271 77 15 62 chrY 7305970 7306035 -17407044 + (TG)n Simple_repeat Simple_repeat 1 62 0 319 316 87 62 chrY 7307029 7307548 -17405531 + SST1 Satellite centromeric 63 594 -969 241 333 0 10 chrY 7308014 7308113 -17404966 + SST1 Satellite centromeric 1132 1229 -334 299 293 90 18 chrY 7308268 7308435 -17404644 + SST1 Satellite centromeric 1374 1552 -11 387 83 0 0 chrY 7308459 7308519 -17404560 + (TG)n Simple_repeat Simple_repeat 1 60 0 225 327 57 33 chrY 7309499 7309710 -17403369 + SST1 Satellite centromeric 63 278 -1285 456 19 0 0 chrY 7310276 7310329 -17402750 + (TG)n Simple_repeat Simple_repeat 2 54 0 191 48 0 95 chrY 7311620 7311662 -17401417 + (TG)n Simple_repeat Simple_repeat 1 38 0 252 244 23 0 chrY 7312437 7312523 -17400556 + (TG)n Simple_repeat Simple_repeat 1 88 0 239 260 14 0 chrY 7313643 7313716 -17399363 + SST1 Satellite centromeric 207 280 -1283 196 85 0 85 chrY 7314929 7314988 -17398091 + (TG)n Simple_repeat Simple_repeat 1 54 0 186 43 0 0 chrY 7315037 7315060 -17398019 + (T)n Simple_repeat Simple_repeat 1 23 0 245 29 29 0 chrY 7315225 7315259 -17397820 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 208 156 62 0 chrY 7316737 7316801 -17396278 + (CA)n Simple_repeat Simple_repeat 2 69 0 182 39 0 0 chrY 7318451 7318477 -17394602 - L2 LINE L2 -4 3309 3284 34 24 0 0 chrY 7318859 7318900 -17394179 + AT_rich Low_complexity Low_complexity 1 41 0 25 31 0 0 chrY 7319023 7319055 -17394024 + AT_rich Low_complexity Low_complexity 1 32 0 350 271 12 12 chrY 7319061 7319146 -17393933 - FRAM SINE Alu -13 153 69 462 254 18 9 chrY 7319207 7319317 -17393762 - FLAM_C SINE Alu -22 121 11 24 32 0 0 chrY 7320984 7321015 -17392064 + AT_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chrY 7321202 7321226 -17391853 + AT_rich Low_complexity Low_complexity 1 24 0 275 108 14 40 chrY 7321493 7321567 -17391512 + (TA)n Simple_repeat Simple_repeat 1 72 0 312 278 56 24 chrY 7322396 7322522 -17390557 + MLT1F LTR MaLR 386 515 -27 1351 252 3 3 chrY 7322989 7323291 -17389788 + AluSx SINE Alu 1 302 0 1259 227 0 31 chrY 7323344 7323635 -17389444 + AluSx SINE Alu 5 286 -26 1208 81 6 0 chrY 7323661 7323835 -17389244 + (GAAA)n Simple_repeat Simple_repeat 1 175 0 32 26 0 0 chrY 7323939 7323978 -17389101 + AT_rich Low_complexity Low_complexity 1 39 0 361 318 105 7 chrY 7324519 7324671 -17388408 - AluJ/FLAM SINE Alu -215 87 1 247 241 9 71 chrY 7324990 7325102 -17387977 - L1P LINE L1 -2579 3567 3463 883 325 47 29 chrY 7325945 7326394 -17386685 - L1M3b LINE L1 -5771 510 54 1627 189 0 30 chrY 7326502 7326803 -17386276 + AluY SINE Alu 2 293 -18 1407 215 89 54 chrY 7327009 7327414 -17385665 - MSTB LTR MaLR -4 422 4 227 327 39 88 chrY 7327692 7327753 -17385326 - L1M3de LINE L1 -5977 676 614 1698 185 30 3 chrY 7327753 7328051 -17385028 + AluSx SINE Alu 1 306 -6 227 327 39 88 chrY 7328051 7328194 -17384885 - L1M3de LINE L1 -6039 614 482 3615 120 173 40 chrY 7328204 7328811 -17384268 + LTR12 LTR ERV1 1 688 0 13229 140 16 15 chrY 7328811 7331862 -17381217 + HERV9 LTR ERV1 1 3139 -5260 5464 151 3 16 chrY 7331869 7332775 -17380304 + HERV9 LTR ERV1 4080 4974 -3425 2242 199 99 62 chrY 7332742 7333592 -17379487 + HERV9 LTR ERV1 840 1720 -5176 * 3957 145 8 2 chrY 7333587 7334201 -17378878 + HERV9 LTR ERV1 7757 8374 -25 2945 129 197 69 chrY 7334208 7334818 -17378261 + LTR12 LTR ERV1 1 688 0 1137 292 10 17 chrY 7334822 7335120 -17377959 + AluJo SINE Alu 2 297 -5 30 27 0 0 chrY 7335148 7335185 -17377894 + AT_rich Low_complexity Low_complexity 1 37 0 1249 229 3 50 chrY 7335185 7335482 -17377597 - AluSx SINE Alu -17 285 3 1312 135 5 0 chrY 7335781 7336000 -17377079 + AluSp SINE Alu 99 318 0 2041 152 3 0 chrY 7336051 7336354 -17376725 + AluSx SINE Alu 1 304 -8 261 301 37 68 chrY 7336481 7336644 -17376435 - L1M3de LINE L1 -5214 1439 1282 529 247 34 31 chrY 7337002 7337175 -17375904 + L1MA4 LINE L1 6000 6174 -126 1333 232 0 29 chrY 7337175 7337485 -17375594 + AluJo SINE Alu 2 302 -10 529 247 34 31 chrY 7337485 7337533 -17375546 + L1MA4 LINE L1 6174 6220 -80 1165 205 4 17 chrY 7337543 7337777 -17375302 - AluSx SINE Alu -26 286 56 22 35 0 0 chrY 7339078 7339107 -17373972 + AT_rich Low_complexity Low_complexity 1 29 0 649 243 27 49 chrY 7339470 7339780 -17373299 + L1M4 LINE L1 5254 5555 -614 743 196 178 18 chrY 7339978 7340339 -17372740 + L1MB5 LINE L1 5254 5746 -428 973 257 70 15 chrY 7340364 7340691 -17372388 + L1MB5 LINE L1 5817 6161 -13 183 80 0 0 chrY 7340715 7340740 -17372339 + (T)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chrY 7342018 7342039 -17371040 + AT_rich Low_complexity Low_complexity 1 21 0 947 290 28 21 chrY 7342153 7342439 -17370640 + AluJo SINE Alu 1 288 -14 25 31 0 0 chrY 7343548 7343580 -17369499 + AT_rich Low_complexity Low_complexity 1 32 0 783 239 0 0 chrY 7343853 7344008 -17369071 - AluSg/x SINE Alu -17 295 141 304 179 14 21 chrY 7344010 7344155 -17368924 + (TA)n Simple_repeat Simple_repeat 2 145 0 480 200 10 21 chrY 7344193 7344726 -17368353 + (TA)n Simple_repeat Simple_repeat 1 538 -3073 18625 42 5 0 chrY 7344726 7347655 -17365424 - L1PA3 LINE L1 -3 6152 3213 480 200 10 21 chrY 7347655 7347844 -17365235 + (TA)n Simple_repeat Simple_repeat 538 3611 0 276 291 29 0 chrY 7347887 7348059 -17365020 + (TA)n Simple_repeat Simple_repeat 2 178 0 14155 49 1 1 chrY 7348570 7350328 -17362751 - L1PA3 LINE L1 -2961 3185 1427 17836 47 2 0 chrY 7350330 7353290 -17359789 + L1PA3 LINE L1 3188 6155 0 283 392 17 0 chrY 7353830 7353950 -17359129 - L2 LINE L2 -271 3042 2921 250 229 29 29 chrY 7354506 7354611 -17358468 + (TATATG)n Simple_repeat Simple_repeat 3 107 0 5884 113 18 6 chrY 7354611 7355523 -17357556 - L1PA7 LINE L1 -4 6150 5232 10579 134 11 11 chrY 7355536 7357441 -17355638 - L1PA7 LINE L1 -1538 4608 2705 286 232 61 12 chrY 7357888 7358052 -17355027 + (TA)n Simple_repeat Simple_repeat 2 173 0 28 48 0 0 chrY 7366037 7366079 -17347000 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chrY 7366205 7366226 -17346853 + AT_rich Low_complexity Low_complexity 1 21 0 324 0 0 0 chrY 7366533 7366569 -17346510 + (TG)n Simple_repeat Simple_repeat 1 36 0 811 249 124 0 chrY 7366606 7366807 -17346272 - AluJb SINE Alu -30 282 57 1157 260 40 0 chrY 7369590 7369704 -17343375 + AluJo SINE Alu 8 116 -196 207 0 0 0 chrY 7369704 7369727 -17343352 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1157 260 40 0 chrY 7369727 7369885 -17343194 + AluJo SINE Alu 116 291 -21 1814 170 20 0 chrY 7369896 7370190 -17342889 + AluSx SINE Alu 6 305 -7 1757 183 0 3 chrY 7371970 7372254 -17340825 + AluSx SINE Alu 3 287 -25 351 0 0 0 chrY 7372254 7372293 -17340786 + (CA)n Simple_repeat Simple_repeat 2 40 0 1757 183 0 3 chrY 7372293 7372309 -17340770 + AluSx SINE Alu 287 302 -10 309 310 112 71 chrY 7375603 7375968 -17337111 + L1M2 LINE L1 758 1137 -5712 1115 169 22 13 chrY 7378137 7378368 -17334711 + LTR1 LTR ERV1 1 233 -552 * 1793 185 36 74 chrY 7378346 7378951 -17334128 + LTR1 LTR ERV1 113 694 -91 466 225 0 42 chrY 7379320 7379440 -17333639 - MER41E LTR ERV1 -397 115 1 21 0 0 0 chrY 7380270 7380291 -17332788 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chrY 7381404 7381432 -17331647 + AT_rich Low_complexity Low_complexity 1 28 0 227 296 99 0 chrY 7382350 7382431 -17330648 - MIR SINE MIR -122 140 52 823 287 10 0 chrY 7382431 7382626 -17330453 - MIR SINE MIR -65 197 1 390 21 0 0 chrY 7382712 7382759 -17330320 + (CA)n Simple_repeat Simple_repeat 1 47 0 816 327 80 35 chrY 7383401 7383998 -17329081 + L2 LINE L2 1173 1796 -1518 938 218 38 85 chrY 7384002 7384150 -17328929 + AluSg SINE Alu 9 136 -174 8709 57 4 0 chrY 7384150 7386055 -17327024 - L1PA4 LINE L1 -1 6154 4244 938 218 38 85 chrY 7386055 7386223 -17326856 + AluSg SINE Alu 136 310 0 541 272 193 23 chrY 7386223 7386524 -17326555 + L2 LINE L2 1786 2137 -1177 35265 70 15 1 chrY 7386850 7391769 -17321310 + L1PA4 LINE L1 1 4990 -1156 1135 39 0 0 chrY 7391769 7391899 -17321180 + AluYa5/8 SINE Alu 166 295 -16 7285 38 6 0 chrY 7391899 7393065 -17320014 + L1PA4 LINE L1 4980 6150 -5 2039 124 7 7 chrY 7394363 7394645 -17318434 + AluSp SINE Alu 1 285 -28 267 31 0 0 chrY 7394645 7394677 -17318402 + (CA)n Simple_repeat Simple_repeat 1 32 0 610 247 165 28 chrY 7394763 7395054 -17318025 - Charlie2 DNA MER1_type -671 2191 1861 720 281 56 14 chrY 7395082 7395401 -17317678 - MER93b LTR ERV1 -2 371 62 192 311 16 0 chrY 7395937 7395998 -17317081 - L2 LINE L2 -6 3307 3246 24 32 0 0 chrY 7397375 7397406 -17315673 + AT_rich Low_complexity Low_complexity 1 31 0 453 333 124 13 chrY 7397766 7398138 -17314941 + L2 LINE L2 1592 2004 -1310 367 302 7 60 chrY 7398363 7398512 -17314567 + L2 LINE L2 3171 3311 -2 180 346 61 33 chrY 7398657 7398871 -17314208 + L2 LINE L2 2513 2732 -582 237 320 112 8 chrY 7399051 7399176 -17313903 + L2 LINE L2 3172 3309 -4 213 94 0 0 chrY 7399676 7399708 -17313371 + (TG)n Simple_repeat Simple_repeat 1 32 0 330 233 0 0 chrY 7399730 7399816 -17313263 + (TA)n Simple_repeat Simple_repeat 2 87 0 222 118 0 0 chrY 7399847 7399881 -17313198 + (TG)n Simple_repeat Simple_repeat 2 35 0 1184 140 6 0 chrY 7400036 7400215 -17312864 - AluSp SINE Alu -11 302 123 1613 180 10 27 chrY 7400218 7400518 -17312561 - AluSq SINE Alu -18 295 1 275 307 21 74 chrY 7400519 7400708 -17312371 + L2 LINE L2 2831 3009 -263 1688 141 33 49 chrY 7400989 7401294 -17311785 - AluY SINE Alu 0 311 12 222 211 132 26 chrY 7401335 7401411 -17311668 + L2 LINE L2 3139 3222 -50 1664 296 43 33 chrY 7401690 7401979 -17311100 + HAL1 LINE L1 1217 1502 -1005 2050 115 3 62 chrY 7401979 7402301 -17310778 + AluSp SINE Alu 1 303 -10 1664 296 43 33 chrY 7402301 7402832 -17310247 + HAL1 LINE L1 1502 2045 -462 250 315 153 11 chrY 7402825 7403301 -17309778 + L1M4 LINE L1 2860 3403 -2743 * 186 204 26 0 chrY 7403315 7403428 -17309651 + (TA)n Simple_repeat Simple_repeat 1 116 0 309 266 49 49 chrY 7403568 7403711 -17309368 + L1MA8 LINE L1 3594 3736 -2410 2622 116 6 0 chrY 7404196 7404549 -17308530 + THE1A LTR MaLR 1 355 0 1541 137 68 30 chrY 7404691 7404954 -17308125 - AluSx SINE Alu -39 273 1 1820 199 0 0 chrY 7404994 7405306 -17307773 - AluSx SINE Alu 0 312 1 28 48 0 0 chrY 7406496 7406538 -17306541 + AT_rich Low_complexity Low_complexity 1 42 0 2956 252 52 41 chrY 7408857 7409733 -17303346 + L1MA8 LINE L1 4559 5424 -867 207 0 0 0 chrY 7409733 7409756 -17303323 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2956 252 52 41 chrY 7409756 7410600 -17302479 + L1MA8 LINE L1 5424 6291 0 297 0 0 0 chrY 7410740 7410773 -17302306 + (CA)n Simple_repeat Simple_repeat 2 34 0 387 330 100 33 chrY 7410814 7410918 -17302161 + L1M4c LINE L1 1046 1142 -5242 999 218 40 44 chrY 7410918 7411216 -17301863 + AluJo SINE Alu 2 298 -4 387 330 100 33 chrY 7411216 7411411 -17301668 + L1M4c LINE L1 1142 1365 -5019 219 88 0 0 chrY 7411951 7411985 -17301094 + (T)n Simple_repeat Simple_repeat 1 34 0 222 117 0 50 chrY 7412196 7412256 -17300823 + (GGAA)n Simple_repeat Simple_repeat 1 57 0 360 296 110 86 chrY 7414779 7415289 -17297790 + L1M2 LINE L1 906 1427 -5422 1500 177 54 0 chrY 7419526 7419803 -17293276 - AluSg SINE Alu -18 292 1 21 57 0 0 chrY 7419856 7419891 -17293188 + AT_rich Low_complexity Low_complexity 1 35 0 1880 160 3 0 chrY 7421515 7421803 -17291276 - AluSx SINE Alu -18 294 6 1183 244 3 7 chrY 7421815 7422098 -17290981 - AluJo SINE Alu -23 289 8 2169 108 0 10 chrY 7423361 7423667 -17289412 - AluY SINE Alu -8 303 1 860 241 123 5 chrY 7426144 7426347 -17286732 + AluJb SINE Alu 56 282 -30 216 97 0 0 chrY 7426860 7426891 -17286188 + (TA)n Simple_repeat Simple_repeat 2 32 0 4839 133 4 19 chrY 7430188 7430886 -17282193 - LTR12 LTR ERV1 0 688 1 2297 94 7 7 chrY 7433402 7433711 -17279368 + AluY SINE Alu 1 309 -2 528 122 0 0 chrY 7433713 7433795 -17279284 + (GGAA)n Simple_repeat Simple_repeat 3 84 0 221 216 26 43 chrY 7434458 7434574 -17278505 + (CATATA)n Simple_repeat Simple_repeat 1 114 0 23 54 0 0 chrY 7434632 7434669 -17278410 + AT_rich Low_complexity Low_complexity 1 37 0 17744 117 17 2 chrY 7435079 7438515 -17274564 + L1PA7 LINE L1 2707 6154 0 365 247 40 11 chrY 7438515 7438689 -17274390 + (TA)n Simple_repeat Simple_repeat 2 180 0 23 78 0 0 chrY 7438708 7438759 -17274320 + AT_rich Low_complexity Low_complexity 1 51 0 244 337 167 16 chrY 7439241 7439499 -17273580 + L2 LINE L2 2921 3217 -96 1260 161 5 13 chrY 7440433 7440657 -17272422 - AluSg/x SINE Alu -7 305 84 1332 219 25 7 chrY 7440672 7440955 -17272124 + AluJb SINE Alu 1 288 -24 1323 223 49 0 chrY 7441319 7441606 -17271473 - AluJo SINE Alu -4 308 8 33 35 0 17 chrY 7442695 7442713 -17270366 + AT_rich Low_complexity Low_complexity 1 18 -39 1227 198 13 76 chrY 7442713 7443016 -17270063 + AluSx SINE Alu 1 284 -28 33 35 0 17 chrY 7443016 7443055 -17270024 + AT_rich Low_complexity Low_complexity 18 57 0 1198 235 14 31 chrY 7443279 7443573 -17269506 - AluJb SINE Alu -13 299 11 698 216 0 0 chrY 7443603 7443719 -17269360 - FLAM_C SINE Alu -14 119 4 1100 60 18 12 chrY 7443736 7443903 -17269176 + (TTTC)n Simple_repeat Simple_repeat 2 169 0 263 250 171 0 chrY 7444050 7444126 -17268953 - AluJo/FRAM SINE Alu -45 257 169 1466 218 0 7 chrY 7444126 7444411 -17268668 - AluJb SINE Alu -29 283 1 1771 178 3 3 chrY 7445400 7445703 -17267376 - AluSx SINE Alu -9 303 1 22 70 0 0 chrY 7445796 7445839 -17267240 + AT_rich Low_complexity Low_complexity 1 43 0 25 0 0 0 chrY 7446160 7446185 -17266894 + AT_rich Low_complexity Low_complexity 1 25 0 1962 147 3 6 chrY 7446416 7446728 -17266351 - AluSx SINE Alu -1 311 1 817 209 55 0 chrY 7446740 7446922 -17266157 + AluJo SINE Alu 120 311 -1 201 74 0 0 chrY 7446922 7446949 -17266130 + (GGAA)n Simple_repeat Simple_repeat 2 28 0 1411 202 10 7 chrY 7447111 7447403 -17265676 - AluSx SINE Alu -9 303 11 21 36 0 0 chrY 7447730 7447758 -17265321 + AT_rich Low_complexity Low_complexity 1 28 0 211 302 166 12 chrY 7447837 7448006 -17265073 - MIR SINE MIR -11 251 57 29182 31 15 1 chrY 7448125 7454146 -17258933 + L1HS LINE L1 3 6153 -2 255 111 0 0 chrY 7454157 7454193 -17258886 - L1M4 LINE L1 -1598 4548 4513 407 295 0 0 chrY 7457211 7457316 -17255763 + FLAM_C SINE Alu 6 110 -33 383 119 17 0 chrY 7457328 7457387 -17255692 - MER1B DNA MER1_type -13 326 267 1063 209 81 16 chrY 7457541 7457799 -17255280 - MER1B DNA MER1_type -64 275 1 673 225 42 51 chrY 7457908 7458144 -17254935 + AluJb SINE Alu 1 234 -78 22 56 0 0 chrY 7458205 7458241 -17254838 + AT_rich Low_complexity Low_complexity 1 36 0 495 48 0 0 chrY 7458661 7458723 -17254356 + (TG)n Simple_repeat Simple_repeat 2 63 0 22 94 0 0 chrY 7458784 7458848 -17254231 + AT_rich Low_complexity Low_complexity 1 64 0 1509 142 12 24 chrY 7462698 7462951 -17250128 - AluSc SINE Alu -45 264 15 963 263 27 44 chrY 7463118 7463415 -17249664 - AluJo SINE Alu -10 292 1 27 0 0 0 chrY 7463522 7463549 -17249530 + AT_rich Low_complexity Low_complexity 1 27 0 2007 230 147 21 chrY 7464589 7465349 -17247730 - L1MB5 LINE L1 -13 6161 5306 796 119 21 21 chrY 7466436 7466579 -17246500 + AluSp/q SINE Alu 171 313 0 1405 201 29 7 chrY 7467449 7467727 -17245352 - AluSg SINE Alu -12 298 15 1380 213 17 3 chrY 7468244 7468544 -17244535 + AluJb SINE Alu 3 306 -6 234 0 0 0 chrY 7468583 7468609 -17244470 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 43446 46 2 1 chrY 7468609 7474745 -17238334 - L1PA3 LINE L1 -6 6149 9 639 266 49 73 chrY 7475005 7475136 -17237943 - MLT1A1 LTR MaLR -14 351 218 1761 145 48 3 chrY 7475136 7475426 -17237653 - AluSc SINE Alu -6 303 1 639 266 49 73 chrY 7475426 7475580 -17237499 - MLT1A1 LTR MaLR -147 218 73 467 323 13 42 chrY 7475580 7475890 -17237189 - MER31-int LTR ERV1 -261 4675 4375 377 233 22 0 chrY 7475987 7476077 -17237002 - MER31-int LTR ERV1 -721 4215 4124 425 189 24 0 chrY 7476077 7476246 -17236833 + (TA)n Simple_repeat Simple_repeat 2 174 0 60 27 0 0 chrY 7476246 7476320 -17236759 + AT_rich Low_complexity Low_complexity 1 74 0 1071 206 0 83 chrY 7476333 7476586 -17236493 - AluJb SINE Alu -80 232 1 1137 256 40 47 chrY 7476614 7477043 -17236036 - MER31-int LTR ERV1 -835 4101 3676 1475 177 0 90 chrY 7477130 7477464 -17235615 - AluSx SINE Alu -8 304 1 1973 240 77 40 chrY 7477525 7478547 -17234532 - MER31-int LTR ERV1 -3570 1366 287 351 227 0 41 chrY 7478561 7478658 -17234421 + (CAGAGA)n Simple_repeat Simple_repeat 2 94 0 558 226 16 0 chrY 7479884 7480008 -17233071 + L1M2 LINE L1 13 138 -6711 3227 109 21 0 chrY 7480019 7480828 -17232251 + L1P2 LINE L1 4918 5745 -409 38950 157 5 5 chrY 7480832 7487569 -17225510 + HERVK22 LTR ERVK 52 6835 -2 2963 188 23 3 chrY 7487570 7488139 -17224940 + LTR22 LTR ERVK 1 580 0 615 259 7 0 chrY 7488750 7488889 -17224190 + MLT1D LTR MaLR 301 440 -65 435 337 80 37 chrY 7489042 7489443 -17223636 - L2 LINE L2 -460 2854 2437 2061 118 0 10 chrY 7489828 7490162 -17222917 + AluSg1 SINE Alu 1 331 0 238 342 45 0 chrY 7490179 7490290 -17222789 + MIR SINE MIR 47 162 -100 33 56 0 0 chrY 7490901 7490955 -17222124 + AT_rich Low_complexity Low_complexity 1 54 0 1749 143 15 58 chrY 7491122 7491451 -17221628 - MER52C LTR ERV1 0 1278 964 2806 45 48 0 chrY 7491921 7492313 -17220766 + L1PA4 LINE L1 5774 6182 0 291 28 0 0 chrY 7492796 7492832 -17220247 + (TG)n Simple_repeat Simple_repeat 2 37 0 1390 113 0 16 chrY 7492832 7493026 -17220053 - AluSg/x SINE Alu -25 285 95 1851 169 10 0 chrY 7493149 7493450 -17219629 + AluSx SINE Alu 1 304 -8 5169 133 91 7 chrY 7493452 7494363 -17218716 + L1PA7 LINE L1 3598 4585 -1561 288 130 0 0 chrY 7494370 7494416 -17218663 + (CA)n Simple_repeat Simple_repeat 2 47 0 6037 107 8 1 chrY 7494418 7495751 -17217328 + L1PA7 LINE L1 4807 6146 -8 214 356 144 0 chrY 7496086 7496204 -17216875 - L2 LINE L2 -1 3271 3137 305 272 41 14 chrY 7496336 7496483 -17216596 + L1M4 LINE L1 4457 4607 -1539 1759 157 21 7 chrY 7497966 7498253 -17214826 - AluSx SINE Alu -21 291 1 187 317 50 30 chrY 7498545 7498646 -17214433 + L2 LINE L2 3204 3306 -7 812 309 94 42 chrY 7498917 7499341 -17213738 + MLT1J LTR MaLR 19 464 -47 57 61 0 0 chrY 7499629 7499728 -17213351 + AT_rich Low_complexity Low_complexity 1 99 0 211 274 0 0 chrY 7499787 7499849 -17213230 + (TATATG)n Simple_repeat Simple_repeat 2 63 0 242 65 0 0 chrY 7499978 7500009 -17213070 + THE1A LTR MaLR 325 355 0 2230 112 11 0 chrY 7500012 7500361 -17212718 + THE1A-int LTR MaLR 4 356 -1224 1380 158 26 0 chrY 7500368 7500633 -17212446 + LTR19B LTR ERV1 307 578 -2 3894 171 6 47 chrY 7500635 7501528 -17211551 + HERVFH19I LTR ERV1 1 921 -4665 1001 137 34 64 chrY 7501495 7501699 -17211380 + HERVFH19I LTR ERV1 1113 1310 -4276 * 3428 30 0 0 chrY 7501699 7502100 -17210979 + L1PA3 LINE L1 5750 6150 -5 1846 134 34 3 chrY 7502127 7502455 -17210624 + HERVFH19I LTR ERV1 1300 1637 -3949 1622 180 23 3 chrY 7502456 7502762 -17210317 + AluSp SINE Alu 1 312 -1 189 0 0 0 chrY 7503466 7503487 -17209592 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 432 286 24 8 chrY 7503827 7503953 -17209126 + MIR3 SINE MIR 66 193 -15 325 282 24 0 chrY 7504119 7504204 -17208875 - MIR SINE MIR -127 135 49 1055 194 26 77 chrY 7505082 7505433 -17207646 - MLT1B LTR MaLR -57 333 1 21 36 0 0 chrY 7505717 7505745 -17207334 + AT_rich Low_complexity Low_complexity 1 28 0 180 0 0 0 chrY 7506274 7506294 -17206785 + (T)n Simple_repeat Simple_repeat 1 20 0 227 267 17 17 chrY 7506713 7506773 -17206306 - MIR3 SINE MIR -54 154 95 28 29 0 0 chrY 7507305 7507340 -17205739 + AT_rich Low_complexity Low_complexity 1 35 0 1052 255 46 46 chrY 7508270 7508650 -17204429 + MLT1C LTR MaLR 36 418 -49 2136 118 0 0 chrY 7508650 7508954 -17204125 + AluY SINE Alu 1 304 -7 1052 255 46 46 chrY 7508954 7509005 -17204074 + MLT1C LTR MaLR 417 467 0 198 103 0 0 chrY 7509343 7509372 -17203707 + (ATG)n Simple_repeat Simple_repeat 2 30 0 413 376 24 10 chrY 7509652 7509857 -17203222 + L2 LINE L2 271 478 -2836 190 347 68 14 chrY 7509913 7510060 -17203019 + L2 LINE L2 639 793 -2521 1513 208 3 24 chrY 7510077 7510370 -17202709 - AluJo SINE Alu -19 293 7 997 262 23 30 chrY 7510540 7510845 -17202234 + MLT1E LTR MaLR 289 591 -2 23 0 0 0 chrY 7511582 7511605 -17201474 + AT_rich Low_complexity Low_complexity 1 23 0 290 45 23 0 chrY 7512571 7512615 -17200464 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 21 71 0 0 chrY 7513812 7513854 -17199225 + AT_rich Low_complexity Low_complexity 1 42 0 282 315 22 0 chrY 7514014 7514103 -17198976 - L2 LINE L2 0 3313 3223 225 0 0 0 chrY 7514671 7514696 -17198383 + (CA)n Simple_repeat Simple_repeat 2 26 0 801 236 0 22 chrY 7514697 7514875 -17198204 + FRAM SINE Alu 1 174 -2 1364 214 18 4 chrY 7514905 7515219 -17197860 - AluSx SINE Alu 0 318 1 1023 289 68 39 chrY 7515806 7516456 -17196623 + LTR65 LTR ERV1 1 669 0 252 0 0 0 chrY 7516675 7516703 -17196376 + (T)n Simple_repeat Simple_repeat 1 28 0 1248 210 70 3 chrY 7516703 7516989 -17196090 + AluSg SINE Alu 2 306 -4 307 314 164 48 chrY 7517383 7517762 -17195317 + L1MEc LINE L1 56 478 -5918 737 266 15 79 chrY 7517775 7518169 -17194910 - L1M2b LINE L1 -5277 1932 1564 1405 263 107 68 chrY 7518194 7518954 -17194125 - L1M2b LINE L1 -6420 789 1 1966 147 10 7 chrY 7518984 7519291 -17193788 - AluSx SINE Alu -4 308 1 1435 306 40 52 chrY 7519334 7520232 -17192847 - L1M3de LINE L1 -4600 2053 1167 341 238 56 24 chrY 7521039 7521165 -17191914 + MLT1F LTR MaLR 386 515 -27 1091 214 4 28 chrY 7521677 7521929 -17191150 + AluSx SINE Alu 58 303 -9 1371 206 14 31 chrY 7521976 7522267 -17190812 + AluSx SINE Alu 5 290 -22 821 144 29 0 chrY 7522300 7522473 -17190606 + GA-rich Low_complexity Low_complexity 3 180 0 351 211 0 0 chrY 7522489 7522579 -17190500 + GA-rich Low_complexity Low_complexity 2 91 0 23 33 0 0 chrY 7522650 7522680 -17190399 + AT_rich Low_complexity Low_complexity 1 30 0 384 284 52 3 chrY 7523207 7523337 -17189742 - AluJ/FLAM SINE Alu -215 87 1 255 294 11 22 chrY 7523478 7523570 -17189509 + MLT1E LTR MaLR 385 475 -118 824 347 20 32 chrY 7524636 7525082 -17187997 - L1M3de LINE L1 -5771 892 451 264 30 0 0 chrY 7525082 7525115 -17187964 + (TTG)n Simple_repeat Simple_repeat 2 34 0 824 347 20 32 chrY 7525115 7525172 -17187907 - L1M3de LINE L1 -6212 451 395 1688 185 0 14 chrY 7525207 7525516 -17187563 + AluSg SINE Alu 1 305 0 1528 201 37 62 chrY 7525716 7526153 -17186926 - MSTB LTR MaLR 0 426 1 2135 139 0 3 chrY 7526485 7526788 -17186291 + AluSx SINE Alu 1 302 -10 297 367 30 18 chrY 7526817 7527299 -17185780 - L1M3de LINE L1 -5214 1439 605 731 234 12 24 chrY 7527325 7527492 -17185587 + FRAM SINE Alu 1 165 -1 1362 229 3 14 chrY 7527554 7527842 -17185237 - AluSx SINE Alu -25 287 3 1486 197 31 3 chrY 7528306 7528595 -17184484 + AluSg SINE Alu 1 297 -13 1147 201 61 31 chrY 7530541 7530950 -17182129 + L1MB5 LINE L1 5306 5744 -439 1048 259 51 12 chrY 7530977 7531309 -17181770 + L1MB5 LINE L1 5817 6161 -13 27 0 0 0 chrY 7532674 7532701 -17180378 + AT_rich Low_complexity Low_complexity 1 27 0 800 296 19 23 chrY 7532809 7533069 -17180010 + AluJo SINE Alu 1 259 -53 1729 171 0 4 chrY 7534498 7534809 -17178270 - AluSg SINE Alu 0 310 1 22 35 0 0 chrY 7535759 7535788 -17177291 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chrY 7536033 7536054 -17177025 + AT_rich Low_complexity Low_complexity 1 21 0 1665 171 0 10 chrY 7536339 7536632 -17176447 - AluSg SINE Alu -20 290 1 1647 151 41 0 chrY 7538636 7538930 -17174149 + AluSc SINE Alu 1 305 0 2050 132 3 3 chrY 7539410 7539714 -17173365 - AluSc SINE Alu -5 304 1 22 70 0 0 chrY 7540981 7541024 -17172055 + AT_rich Low_complexity Low_complexity 1 43 0 278 207 0 0 chrY 7541341 7541399 -17171680 + Charlie3 DNA MER1_type 2636 2693 -17 503 250 0 0 chrY 7541411 7541519 -17171560 - FLAM_C SINE Alu -33 110 3 1791 166 14 0 chrY 7546520 7546534 -17166545 - AluSx SINE Alu -12 300 288 180 111 0 0 chrY 7546534 7546561 -17166518 + (TG)n Simple_repeat Simple_repeat 2 28 0 1791 166 14 0 chrY 7546561 7546842 -17166237 - AluSx SINE Alu -24 288 1 23 0 0 0 chrY 7546907 7546930 -17166149 + AT_rich Low_complexity Low_complexity 1 23 0 1973 134 0 7 chrY 7547136 7547419 -17165660 + AluSq SINE Alu 3 283 -30 381 315 118 45 chrY 7548143 7548432 -17164647 + L2 LINE L2 2196 2505 -809 261 0 0 0 chrY 7549522 7549551 -17163528 + (TG)n Simple_repeat Simple_repeat 2 30 0 * 284 47 47 31 chrY 7549548 7549612 -17163467 + (TTTTG)n Simple_repeat Simple_repeat 3 67 0 214 297 27 27 chrY 7549716 7549790 -17163289 - MER5A DNA MER1_type -73 116 43 335 292 34 56 chrY 7550143 7550410 -17162669 + L1M4 LINE L1 5257 5517 -661 22 0 0 0 chrY 7550531 7550553 -17162526 + AT_rich Low_complexity Low_complexity 1 22 0 524 218 82 0 chrY 7552505 7552615 -17160464 + MER41E LTR ERV1 1 119 -393 2912 169 35 56 chrY 7552971 7553681 -17159398 - LTR1 LTR ERV1 -90 695 1 250 208 42 0 chrY 7553851 7553899 -17159180 - LTR33A LTR ERVL -343 180 131 609 183 13 39 chrY 7554162 7554315 -17158764 - LTR7 LTR ERV1 0 450 302 774 134 92 14 chrY 7554359 7554517 -17158562 - LTR7 LTR ERV1 -232 218 1 3376 114 19 39 chrY 7554517 7555085 -17157994 - HERVH LTR ERV1 0 7713 7157 * 15583 156 7 30 chrY 7555080 7557802 -17155277 - HERVH LTR ERV1 -1699 6014 3357 12253 162 5 7 chrY 7557802 7559837 -17153242 - HERVH LTR ERV1 -4883 2830 800 1871 207 20 48 chrY 7559859 7560362 -17152717 - HERVH LTR ERV1 -7254 459 3 1208 203 197 29 chrY 7560364 7560749 -17152330 - LTR7 LTR ERV1 0 450 1 191 67 0 0 chrY 7560857 7560887 -17152192 - L2 LINE L2 0 3313 3284 1863 156 13 3 chrY 7561015 7561323 -17151756 - AluY SINE Alu 0 311 1 4600 94 7 0 chrY 7561648 7562231 -17150848 + LTR14C LTR ERVK 1 587 0 752 250 134 41 chrY 7562322 7562590 -17150489 - AluJo SINE Alu -1 311 19 21 0 0 0 chrY 7564934 7564955 -17148124 + AT_rich Low_complexity Low_complexity 1 21 0 2780 230 57 63 chrY 7566982 7568711 -17144368 + L1MA8 LINE L1 4558 6268 -23 25 40 0 20 chrY 7568717 7568732 -17144347 + AT_rich Low_complexity Low_complexity 1 15 -34 7376 71 1 1 chrY 7568732 7569746 -17143333 + L1PA5 LINE L1 5137 6150 -4 25 40 0 20 chrY 7569746 7569780 -17143299 + AT_rich Low_complexity Low_complexity 15 49 0 237 203 0 16 chrY 7569828 7569892 -17143187 + L1MC4 LINE L1 6647 6709 -1333 385 295 82 70 chrY 7569915 7570026 -17143053 + L1M4c LINE L1 1045 1153 -5231 1091 243 23 43 chrY 7570026 7570330 -17142749 + AluJb SINE Alu 5 302 0 385 295 82 70 chrY 7570330 7570533 -17142546 + L1M4c LINE L1 1153 1363 -5021 213 297 5 49 chrY 7571245 7571360 -17141719 + GA-rich Low_complexity Low_complexity 1 109 0 372 88 0 0 chrY 7573320 7573377 -17139702 + (CA)n Simple_repeat Simple_repeat 2 58 0 186 128 0 0 chrY 7575896 7575935 -17137144 + (CCA)n Simple_repeat Simple_repeat 1 39 0 1201 168 2 1 chrY 7577820 7590302 -17122777 - ALR/Alpha Satellite centromeric 0 12494 1 1145 159 1 1 chrY 7590314 7594814 -17118265 - ALR/Alpha Satellite centromeric 0 4502 1 873 114 0 0 chrY 7594814 7594937 -17118142 + L1P LINE L1 16 138 -6008 255 274 0 0 chrY 7595315 7595399 -17117680 + (CA)n Simple_repeat Simple_repeat 1 84 0 439 306 0 17 chrY 7595414 7595594 -17117485 + GA-rich Low_complexity Low_complexity 2 178 0 186 192 0 0 chrY 7596687 7596739 -17116340 + (CA)n Simple_repeat Simple_repeat 1 52 0 439 267 7 7 chrY 7596745 7596880 -17116199 + GA-rich Low_complexity Low_complexity 2 136 0 859 142 0 0 chrY 7597402 7597522 -17115557 - 5S rRNA rRNA 0 121 2 281 221 10 0 chrY 7598269 7598373 -17114706 + (CA)n Simple_repeat Simple_repeat 2 106 0 1817 184 83 34 chrY 7598380 7598847 -17114232 + LTR2B LTR ERV1 1 490 0 230 206 14 0 chrY 7598883 7598956 -17114123 + GA-rich Low_complexity Low_complexity 2 75 0 301 211 26 0 chrY 7598973 7599049 -17114030 + GA-rich Low_complexity Low_complexity 6 83 0 684 149 8 8 chrY 7599867 7599988 -17113091 - 5S rRNA rRNA 0 121 1 7700 157 28 82 chrY 7600378 7602242 -17110837 - L1M1 LINE L1 -4326 3239 1477 * 9770 207 25 4 chrY 7602239 7604508 -17108571 - L1P LINE L1 -815 5331 3016 232 264 0 0 chrY 7605450 7605522 -17107557 + MER103 DNA DNA 12 83 -83 285 267 0 50 chrY 7605560 7605680 -17107399 + L2 LINE L2 1971 2084 -1230 2360 206 25 4 chrY 7606811 7607325 -17105754 - L1PB4 LINE L1 -12 6144 5620 300 205 64 13 chrY 7607600 7607678 -17105401 + L2 LINE L2 3191 3272 0 2075 187 104 38 chrY 7607893 7608422 -17104657 + LTR6A LTR ERV1 1 564 0 205 267 0 0 chrY 7608965 7609010 -17104069 + L2 LINE L2 3261 3305 -8 259 243 171 0 chrY 7609131 7609201 -17103878 + L2 LINE L2 3230 3311 -2 22 56 0 0 chrY 7609963 7609999 -17103080 + AT_rich Low_complexity Low_complexity 1 36 0 464 293 155 11 chrY 7610331 7610675 -17102404 - MLT1H1 LTR MaLR -120 422 32 2340 93 0 3 chrY 7611430 7611742 -17101337 - AluY SINE Alu 0 311 1 317 138 0 31 chrY 7611742 7611801 -17101278 - L1P LINE L1 -801 5361 5304 3659 172 30 13 chrY 7611805 7612549 -17100530 + L1PA16 LINE L1 5390 6145 -21 11204 214 98 15 chrY 7612560 7615464 -17097615 + L1M1 LINE L1 17 3159 -4406 * 32373 85 5 0 chrY 7615455 7620082 -17092997 - L1P LINE L1 -1491 4655 7 5075 264 61 17 chrY 7620096 7621981 -17091098 + L1M1 LINE L1 3288 5090 -2475 2025 147 0 7 chrY 7621981 7622305 -17090774 + AluSx SINE Alu 1 312 0 5075 264 61 17 chrY 7622305 7622674 -17090405 + L1M1 LINE L1 5090 5442 -2123 1689 229 33 14 chrY 7622674 7623094 -17089985 + MSTA LTR MaLR 1 428 0 6626 230 32 10 chrY 7623094 7624709 -17088370 + MSTA-int LTR MaLR 1 1651 0 1657 221 64 12 chrY 7624709 7625116 -17087963 + MSTA LTR MaLR 1 428 0 5075 264 61 17 chrY 7625116 7625465 -17087614 + L1M1 LINE L1 5442 5774 -1791 1904 146 6 32 chrY 7625465 7625781 -17087298 + AluSg SINE Alu 3 310 0 5075 264 61 17 chrY 7625781 7626088 -17086991 + L1M1 LINE L1 5774 6333 -1232 674 84 13 0 chrY 7626099 7626357 -17086722 - CER Satellite Satellite 0 261 1 4950 193 25 7 chrY 7626361 7626778 -17086301 + L1MA2 LINE L1 4850 5258 -1046 1787 159 39 62 chrY 7626778 7627106 -17085973 + THE1C LTR MaLR 1 320 -55 1990 139 3 0 chrY 7627106 7627393 -17085686 + AluSg1 SINE Alu 2 289 -20 1787 159 39 62 chrY 7627393 7627448 -17085631 + THE1C LTR MaLR 320 375 0 4950 193 25 7 chrY 7627448 7628462 -17084617 + L1MA2 LINE L1 5258 6304 0 688 176 103 0 chrY 7628489 7628625 -17084454 - MER4B LTR ERV1 -460 150 1 1876 159 3 0 chrY 7628948 7629289 -17083790 + AluSx SINE Alu 1 342 0 685 305 0 0 chrY 7629895 7630069 -17083010 + MER41D LTR ERV1 384 557 0 7472 321 33 19 chrY 7631235 7631396 -17081683 + PRIMA41-int LTR ERV1 1578 1735 -6021 5154 151 87 11 chrY 7631396 7632297 -17080782 - LTR5 LTR ERVK 0 969 1 7472 321 33 19 chrY 7632297 7635036 -17078043 + PRIMA41-int LTR ERV1 1735 4586 -3170 2332 139 3 27 chrY 7635036 7635245 -17077834 - THE1B LTR MaLR 0 364 166 1734 156 4 0 chrY 7635245 7635521 -17077558 + AluSx SINE Alu 23 299 -13 2332 139 3 27 chrY 7635521 7635684 -17077395 - THE1B LTR MaLR -198 166 1 7472 321 33 19 chrY 7635684 7637285 -17075794 + PRIMA41-int LTR ERV1 4586 6163 -1593 495 195 0 0 chrY 7637595 7637713 -17075366 + (TA)n Simple_repeat Simple_repeat 2 119 0 183 42 0 0 chrY 7637716 7637740 -17075339 + (T)n Simple_repeat Simple_repeat 1 24 0 25 0 0 0 chrY 7639023 7639048 -17074031 + AT_rich Low_complexity Low_complexity 1 25 0 7431 35 3 0 chrY 7639048 7640565 -17072514 - L1PA3 LINE L1 0 6155 4636 5604 52 0 0 chrY 7640567 7641297 -17071782 + L1PA3 LINE L1 3900 4629 -1517 3720 254 110 25 chrY 7641300 7643178 -17069901 - L1 LINE L1 -1213 4933 2896 24 32 0 0 chrY 7643620 7643651 -17069428 + AT_rich Low_complexity Low_complexity 1 31 0 9314 141 11 3 chrY 7644468 7644727 -17068352 - L1PA7 LINE L1 -5 6464 6209 1894 152 61 3 chrY 7644727 7645023 -17068056 - AluSp SINE Alu 0 313 1 9314 141 11 3 chrY 7645023 7647127 -17065952 - L1PA7 LINE L1 -260 6209 4099 4655 253 37 40 chrY 7647139 7648974 -17064105 - L1PA7 LINE L1 -4636 1815 10 645 343 28 44 chrY 7649209 7649638 -17063441 + L1MC4a LINE L1 5491 5912 -1896 329 247 28 67 chrY 7649872 7650050 -17063029 - L1M4 LINE L1 -2554 3592 3422 527 211 11 15 chrY 7650095 7650366 -17062713 + GA-rich Low_complexity Low_complexity 1 270 0 1995 162 15 56 chrY 7650651 7651059 -17062020 + MSTD LTR MaLR 4 394 -2 983 98 8 0 chrY 7651338 7651515 -17061564 + BSR/Beta Satellite Satellite 1 178 -56 473 250 81 25 chrY 7651546 7651706 -17061373 + MIR SINE MIR 27 195 -67 324 163 100 12 chrY 7651706 7651786 -17061293 - MLT1I LTR MaLR 0 409 323 1922 136 0 0 chrY 7651821 7652100 -17060979 - AluY SINE Alu -32 279 1 270 297 77 56 chrY 7652119 7652314 -17060765 - MLT1I LTR MaLR -97 312 114 1710 171 0 3 chrY 7652326 7652618 -17060461 + AluSx SINE Alu 2 292 -20 231 263 94 41 chrY 7652775 7652946 -17060133 + LTR41 LTR ERVL 2 181 -592 321 246 27 27 chrY 7653638 7653748 -17059331 + LTR41 LTR ERVL 658 767 -6 276 349 38 0 chrY 7654031 7654137 -17058942 - MIR SINE MIR -75 133 24 488 204 64 63 chrY 7654634 7654854 -17058225 + MLT1H LTR MaLR 71 321 -228 529 299 129 48 chrY 7654966 7655179 -17057900 + L1M4 LINE L1 4957 5151 -995 2209 136 8 8 chrY 7655179 7655532 -17057547 + THE1A LTR MaLR 1 353 -2 529 299 129 48 chrY 7655532 7655612 -17057467 + L1M4 LINE L1 5151 5223 -923 1929 141 3 0 chrY 7655612 7655902 -17057177 + AluSp SINE Alu 1 291 -22 529 299 129 48 chrY 7655902 7656002 -17057077 + L1M4 LINE L1 5223 5383 -763 195 189 27 0 chrY 7656210 7656247 -17056832 + MER5A DNA MER1_type 15 52 -137 333 331 36 7 chrY 7656708 7656847 -17056232 + L1ME4a LINE L1 5975 6117 -4 1459 248 25 14 chrY 7657843 7658202 -17054877 + MLT1A1 LTR MaLR 1 363 -2 378 205 20 72 chrY 7659032 7659227 -17053852 - L1MEc LINE L1 -4158 2238 2054 2334 135 40 13 chrY 7659237 7659615 -17053464 + MSTA LTR MaLR 3 390 -38 1873 123 0 30 chrY 7659615 7659915 -17053164 - AluSc SINE Alu -18 291 1 26 0 0 0 chrY 7659933 7659959 -17053120 + AT_rich Low_complexity Low_complexity 1 26 0 5961 66 3 9 chrY 7659959 7660814 -17052265 - L1PA4 LINE L1 0 6155 5344 232 195 0 0 chrY 7660814 7660855 -17052224 + MSTA LTR MaLR 386 426 0 453 157 0 0 chrY 7660921 7660991 -17052088 - AluJ/FLAM SINE Alu -241 71 2 2023 126 3 3 chrY 7661023 7661325 -17051754 - AluSx SINE Alu -10 302 1 3004 269 75 21 chrY 7661341 7662537 -17050542 - L1MEc LINE L1 -4901 1495 235 348 290 0 11 chrY 7664648 7664741 -17048338 + L1 LINE L1 14 105 -5850 445 235 20 0 chrY 7664743 7664845 -17048234 + FLAM_C SINE Alu 3 106 -37 294 231 51 26 chrY 7664845 7664923 -17048156 + L1 LINE L1 106 185 -5770 428 263 105 12 chrY 7664923 7665094 -17047985 + L1 LINE L1 4434 4620 -1414 686 311 79 41 chrY 7665128 7665467 -17047612 + L1MA9 LINE L1 459 816 -5139 1952 137 3 0 chrY 7665467 7665774 -17047305 + AluSg1 SINE Alu 1 308 -1 686 311 79 41 chrY 7665774 7665826 -17047253 + L1MA9 LINE L1 816 865 -5090 2774 245 61 47 chrY 7665828 7667075 -17046004 + L1MA9 LINE L1 3977 5240 -794 * 41133 71 3 2 chrY 7667067 7673212 -17039867 - L1PA4 LINE L1 0 6155 7 2941 235 65 16 chrY 7673221 7674128 -17038951 + L1MA9 LINE L1 5225 6175 -25 311 179 63 74 chrY 7674152 7674233 -17038846 - L1MC4 LINE L1 -1339 6703 6622 312 27 0 0 chrY 7674233 7674270 -17038809 + (TG)n Simple_repeat Simple_repeat 2 38 0 311 179 63 74 chrY 7674270 7674283 -17038796 - L1MC4 LINE L1 -1420 6622 6610 26 0 0 0 chrY 7674319 7674345 -17038734 + AT_rich Low_complexity Low_complexity 1 26 0 197 425 0 0 chrY 7674809 7674896 -17038183 - L2 LINE L2 -488 2826 2740 189 292 45 34 chrY 7675322 7675411 -17037668 + MER5A DNA MER1_type 30 119 -70 691 184 0 0 chrY 7675414 7675528 -17037551 + AluJb SINE Alu 2 115 -197 418 255 0 39 chrY 7676392 7676545 -17036534 + CT-rich Low_complexity Low_complexity 3 149 0 384 226 0 0 chrY 7676591 7676715 -17036364 + (TG)n Simple_repeat Simple_repeat 2 125 0 657 238 0 4 chrY 7677785 7678033 -17035046 + CT-rich Low_complexity Low_complexity 1 246 0 458 279 112 29 chrY 7678064 7678404 -17034675 + LSAU Satellite Satellite 131 498 0 329 210 36 123 chrY 7679619 7679757 -17033322 + LSAU Satellite Satellite 2 127 -371 200 280 0 0 chrY 7681034 7681084 -17031995 + GA-rich Low_complexity Low_complexity 1 50 0 536 184 0 25 chrY 7682178 7682336 -17030743 + CT-rich Low_complexity Low_complexity 4 157 0 352 277 28 29 chrY 7682415 7682727 -17030352 + LSAU Satellite Satellite 141 498 0 2580 216 16 54 chrY 7683046 7683916 -17029163 + LTR5 LTR ERVK 133 969 0 1204 161 14 89 chrY 7683918 7684198 -17028881 + Tigger1 DNA MER2_type 2160 2418 0 894 196 6 0 chrY 7684202 7684370 -17028709 - AluJo/FRAM SINE Alu -9 303 135 2207 88 10 0 chrY 7684370 7684675 -17028404 - AluY SINE Alu -3 308 1 218 235 20 0 chrY 7685017 7685068 -17028011 + (TTG)n Simple_repeat Simple_repeat 2 53 0 768 240 114 38 chrY 7685074 7685391 -17027688 - L1PB4 LINE L1 -9 6147 5807 354 107 0 0 chrY 7685425 7685481 -17027598 + (TTTTC)n Simple_repeat Simple_repeat 3 58 0 331 223 48 39 chrY 7686201 7686304 -17026775 + MER89 LTR ERV1 323 426 -133 288 0 0 0 chrY 7686456 7686488 -17026591 + (CA)n Simple_repeat Simple_repeat 1 32 0 1462 190 18 0 chrY 7686624 7686903 -17026176 + AluSx SINE Alu 1 284 -28 420 231 0 37 chrY 7686924 7687032 -17026047 + AluJb SINE Alu 130 233 -69 400 138 12 12 chrY 7687084 7687164 -17025915 + CT-rich Low_complexity Low_complexity 1 80 0 186 209 0 0 chrY 7687178 7687221 -17025858 + CT-rich Low_complexity Low_complexity 4 46 0 393 140 0 0 chrY 7687225 7687282 -17025797 - AluJ/FLAM SINE Alu -242 60 4 733 214 133 85 chrY 7687358 7687515 -17025564 - AluJo SINE Alu -16 286 138 207 0 0 0 chrY 7687515 7687538 -17025541 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1942 121 3 0 chrY 7687542 7687824 -17025255 - AluSp SINE Alu -30 283 1 733 214 133 85 chrY 7687824 7687932 -17025147 - AluJo SINE Alu -166 136 3 228 48 48 71 chrY 7687998 7688010 -17025069 - Alu SINE Alu -8 292 281 225 0 0 0 chrY 7688010 7688035 -17025044 + (ATTG)n Simple_repeat Simple_repeat 2 26 0 228 48 48 71 chrY 7688035 7688064 -17025015 - Alu SINE Alu -19 281 252 846 233 0 89 chrY 7688529 7688821 -17024258 + L1PA13 LINE L1 5888 6153 -10 242 116 23 0 chrY 7688824 7688867 -17024212 + GA-rich Low_complexity Low_complexity 1 44 0 1433 163 48 17 chrY 7688961 7689255 -17023824 - AluSx SINE Alu 0 312 10 315 114 0 0 chrY 7689360 7689404 -17023675 + AluSp/q SINE Alu 240 283 -20 278 25 0 25 chrY 7689422 7689462 -17023617 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 1508 187 3 7 chrY 7689531 7689825 -17023254 + AluSg SINE Alu 8 300 -10 900 78 13 26 chrY 7689828 7689981 -17023098 + (GAAAA)n Simple_repeat Simple_repeat 2 152 0 381 191 0 0 chrY 7690006 7690116 -17022963 + CT-rich Low_complexity Low_complexity 2 111 0 597 194 0 0 chrY 7690143 7690313 -17022766 + CT-rich Low_complexity Low_complexity 2 171 0 211 194 32 16 chrY 7690316 7690378 -17022701 + (TCTCTG)n Simple_repeat Simple_repeat 4 66 0 762 175 0 0 chrY 7690380 7690557 -17022522 + CT-rich Low_complexity Low_complexity 1 177 0 693 181 0 0 chrY 7690586 7690763 -17022316 + CT-rich Low_complexity Low_complexity 2 178 0 431 201 7 0 chrY 7690774 7690913 -17022166 + CT-rich Low_complexity Low_complexity 1 140 0 302 337 55 30 chrY 7690913 7691112 -17021967 - L1M4c LINE L1 -5078 1306 1103 465 238 8 24 chrY 7691150 7691276 -17021803 + MER39B LTR ERV1 284 407 -246 1812 115 0 21 chrY 7691413 7691722 -17021357 + AluSx SINE Alu 1 303 0 222 208 0 0 chrY 7692845 7692898 -17020181 + (CTG)n Simple_repeat Simple_repeat 1 53 0 527 201 6 0 chrY 7692987 7693166 -17019913 + CT-rich Low_complexity Low_complexity 1 180 0 562 183 6 11 chrY 7693190 7693370 -17019709 + CT-rich Low_complexity Low_complexity 2 180 0 328 293 113 63 chrY 7693383 7693762 -17019317 - HAL1 LINE L1 -1230 1277 880 435 162 0 0 chrY 7693770 7693869 -17019210 + CT-rich Low_complexity Low_complexity 2 100 0 277 171 43 0 chrY 7693870 7693940 -17019139 + (TCTG)n Simple_repeat Simple_repeat 2 74 0 630 189 0 0 chrY 7693943 7694123 -17018956 + CT-rich Low_complexity Low_complexity 1 180 0 186 348 79 0 chrY 7694426 7694515 -17018564 + L2 LINE L2 2481 2576 -738 283 290 0 28 chrY 7694530 7694637 -17018442 - L1MC/D LINE L1 -591 5768 5665 183 42 0 0 chrY 7695174 7695198 -17017881 + (GGGTG)n Simple_repeat Simple_repeat 3 26 0 847 154 160 5 chrY 7695427 7695615 -17017464 - AluSg/x SINE Alu 0 312 96 189 0 0 0 chrY 7696380 7696401 -17016678 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 2166 117 0 3 chrY 7696408 7696699 -17016380 - AluSc SINE Alu -18 291 2 5204 40 2 0 chrY 7699410 7700037 -17013042 - L1P LINE L1 -932 5214 4587 4752 53 0 4 chrY 7700038 7700610 -17012469 + L1PA3 LINE L1 5593 6155 0 247 288 24 40 chrY 7700707 7700832 -17012247 - LTR54B LTR ERV1 -337 161 39 622 160 0 130 chrY 7701176 7701345 -17011734 + AluJb SINE Alu 137 283 -29 1788 147 14 0 chrY 7701431 7701723 -17011356 - AluSp SINE Alu -17 296 1 23 54 0 0 chrY 7701730 7701767 -17011312 + AT_rich Low_complexity Low_complexity 1 37 0 2278 70 0 3 chrY 7701781 7702065 -17011014 - AluY SINE Alu -28 283 1 1143 253 92 82 chrY 7702069 7702666 -17010413 - L1M4 LINE L1 -946 5200 4598 360 211 84 23 chrY 7703282 7703404 -17009675 + L1MD2 LINE L1 5706 5816 -305 314 278 174 40 chrY 7704246 7704545 -17008534 - L1MC4 LINE L1 -109 7933 7595 198 71 0 0 chrY 7704550 7704578 -17008501 + (CAT)n Simple_repeat Simple_repeat 1 28 0 333 171 41 82 chrY 7705458 7705604 -17007475 + (GAGTG)n Simple_repeat Simple_repeat 4 143 0 872 172 18 6 chrY 7705769 7705932 -17007147 + L1MC1 LINE L1 6169 6333 0 207 260 0 14 chrY 7705951 7706024 -17007055 + L2 LINE L2 1721 1792 -1522 534 284 93 60 chrY 7706126 7706875 -17006204 + L2 LINE L2 2400 3295 -18 1881 141 20 10 chrY 7706951 7707250 -17005829 + AluJb SINE Alu 1 302 -10 2663 108 13 0 chrY 7707325 7707723 -17005356 + L1MA5A LINE L1 5742 6144 -153 1878 123 14 10 chrY 7707724 7708016 -17005063 + AluSx SINE Alu 6 298 -14 1563 162 30 43 chrY 7708216 7708519 -17004560 + AluJo SINE Alu 1 299 -13 2236 107 0 0 chrY 7708604 7708894 -17004185 - AluSg SINE Alu -20 290 1 2089 119 10 6 chrY 7708904 7709215 -17003864 - AluSx SINE Alu 0 312 1 2228 110 7 0 chrY 7709859 7710158 -17002921 - AluSg SINE Alu -9 301 1 1054 140 45 30 chrY 7710258 7710458 -17002621 + MER3 DNA MER1_type 1 203 -6 1823 190 67 36 chrY 7710556 7710865 -17002214 + MER63B DNA MER1_type 1 328 -734 1575 185 49 3 chrY 7710865 7711152 -17001927 - AluJo SINE Alu -12 300 1 1823 190 67 36 chrY 7711152 7711263 -17001816 + MER63B DNA MER1_type 328 434 -2 298 225 0 72 chrY 7715483 7715594 -16997485 + MER45C DNA AcHobo 488 590 -363 1260 249 65 32 chrY 7717733 7718166 -16994913 + L1MD2 LINE L1 5895 6341 -18 290 359 51 19 chrY 7718588 7718744 -16994335 + MIR3 SINE MIR 33 193 -15 1134 173 9 2 chrY 7718856 7723886 -16989193 + ALR/Alpha Satellite centromeric 1 5066 -75 235 146 0 91 chrY 7724280 7724335 -16988744 + LTR66 LTR ERVL 390 439 -171 8065 28 3 0 chrY 7724369 7725987 -16987092 + L1PA3 LINE L1 4535 6155 0 1043 175 6 2 chrY 7726002 7730762 -16982317 - ALR/Alpha Satellite centromeric 0 4779 1 9604 43 1 0 chrY 7730762 7731924 -16981155 - L1P LINE L1 -1535 4611 3449 1103 175 6 6 chrY 7731924 7735951 -16977128 - ALR/Alpha Satellite centromeric 0 4030 1 1111 30 0 0 chrY 7735951 7736082 -16976997 - L1P LINE L1 -1572 4574 4444 8198 20 0 3 chrY 7736082 7737598 -16975481 + L1PA2 LINE L1 4637 6149 -6 1210 162 5 2 chrY 7737623 7745450 -16967629 - ALR/Alpha Satellite centromeric -4 7852 1 262 175 165 0 chrY 7745488 7745585 -16967494 - ALR/Alpha Satellite centromeric -47 124 12 1024 155 7 2 chrY 7745874 7746817 -16966262 - ALR/Alpha Satellite centromeric 0 947 1 1285 154 4 4 chrY 7746822 7747062 -16966017 - L1PA3 LINE L1 0 6155 5916 1088 156 5 1 chrY 7747344 7750406 -16962673 + ALR/Alpha Satellite centromeric 1 3075 -80 1178 156 3 1 chrY 7750506 7754274 -16958805 - ALR/Alpha Satellite centromeric 0 3772 1 1115 158 9 6 chrY 7754285 7758459 -16954620 - ALR/Alpha Satellite centromeric 0 6268 695 6847 60 5 0 chrY 7758459 7759841 -16953238 - L1PA3 LINE L1 -3 6152 4767 1115 158 9 6 chrY 7759841 7760538 -16952541 - ALR/Alpha Satellite centromeric -5573 695 1 17118 64 5 3 chrY 7760543 7763617 -16949462 - L1PA3 LINE L1 0 6155 3076 4495 87 1 5 chrY 7763617 7765495 -16947584 - L1PA3 LINE L1 -4199 1947 1 1114 165 3 2 chrY 7765498 7768855 -16944224 - ALR/Alpha Satellite centromeric -1 3359 1 4935 54 3 0 chrY 7768956 7770098 -16942981 - L1PA3 LINE L1 -242 5913 4769 1112 155 8 0 chrY 7770098 7771451 -16941628 - ALR/Alpha Satellite centromeric -4 1362 1 1082 163 5 1 chrY 7771597 7779327 -16933752 - ALR/Alpha Satellite centromeric -1 7756 1 1096 164 5 0 chrY 7779341 7784011 -16929068 - ALR/Alpha Satellite centromeric 0 4690 1 2662 49 0 0 chrY 7784023 7784331 -16928748 + AluYb8 SINE Alu 1 308 -10 1120 165 6 1 chrY 7784334 7788568 -16924511 - ALR/Alpha Satellite centromeric 0 4252 1 486 155 0 0 chrY 7788574 7788671 -16924408 + (CATTC)n Simple_repeat Simple_repeat 1 97 0 332 161 32 0 chrY 7788686 7788748 -16924331 - AluS SINE Alu -14 287 224 870 148 0 0 chrY 7788760 7788922 -16924157 + (CACTC)n Simple_repeat Simple_repeat 1 162 0 204 111 0 0 chrY 7788933 7788969 -16924110 + (CATTC)n Simple_repeat Simple_repeat 3 38 0 252 234 31 0 chrY 7788977 7789041 -16924038 - AluJ/FRAM SINE Alu -12 290 225 503 171 16 0 chrY 7789041 7789164 -16923915 + (CATTC)n Simple_repeat Simple_repeat 2 126 0 277 229 0 0 chrY 7789164 7789225 -16923854 - AluJ/FRAM SINE Alu -14 288 228 894 153 0 0 chrY 7789257 7789434 -16923645 + (CATTC)n Simple_repeat Simple_repeat 3 179 0 * 935 142 6 0 chrY 7789420 7789596 -16923483 + (CACTC)n Simple_repeat Simple_repeat 1 177 0 819 169 0 0 chrY 7789609 7789781 -16923298 + (CACTC)n Simple_repeat Simple_repeat 1 172 0 891 174 4 0 chrY 7789861 7790365 -16922714 + (CATTC)n Satellite Satellite 1 506 0 298 222 16 0 chrY 7790365 7790428 -16922651 - AluJ/FRAM SINE Alu -14 288 225 236 177 32 0 chrY 7790428 7790490 -16922589 + (CATTC)n Simple_repeat Simple_repeat 2 65 0 1134 100 0 0 chrY 7790607 7790798 -16922281 + (CATTC)n Satellite Satellite 1 371 0 1134 100 0 0 chrY 7790798 7790978 -16922101 + (CATTC)n Satellite Satellite 1 180 0 338 175 16 0 chrY 7791039 7791102 -16921977 - AluJ/FRAM SINE Alu -14 288 225 1140 84 0 0 chrY 7791112 7791278 -16921801 + (CATTC)n Simple_repeat Simple_repeat 4 169 0 681 190 0 0 chrY 7791283 7791457 -16921622 + (CACTC)n Simple_repeat Simple_repeat 4 177 0 275 214 0 0 chrY 7791479 7791535 -16921544 - AluS SINE Alu -22 278 223 971 126 0 6 chrY 7791684 7791858 -16921221 + (CATTC)n Simple_repeat Simple_repeat 2 174 0 283 250 29 0 chrY 7791861 7791929 -16921150 - AluS SINE Alu -8 293 224 1011 139 0 0 chrY 7791942 7791966 -16921113 + (CACTC)n Simple_repeat Simple_repeat 1 204 0 1011 139 0 0 chrY 7791966 7792146 -16920933 + (CACTC)n Simple_repeat Simple_repeat 1 180 0 753 159 0 0 chrY 7792200 7792363 -16920716 + (CATTC)n Simple_repeat Simple_repeat 5 167 0 318 172 31 0 chrY 7792367 7792431 -16920648 - AluJ/FRAM SINE Alu -12 290 225 360 138 0 0 chrY 7792448 7792513 -16920566 + (CACTC)n Simple_repeat Simple_repeat 1 65 0 672 136 0 0 chrY 7792713 7792838 -16920241 + (GAATG)n Simple_repeat Simple_repeat 1 125 0 329 188 31 0 chrY 7792850 7792914 -16920165 + AluS SINE Alu 225 290 -12 1026 96 0 0 chrY 7792955 7793112 -16919967 + (GAGTG)n Simple_repeat Simple_repeat 4 160 0 314 172 31 0 chrY 7793127 7793191 -16919888 + Alu SINE Alu 224 289 -12 1326 56 0 0 chrY 7793192 7793372 -16919707 + (GAATG)n Simple_repeat Simple_repeat 1 180 0 257 250 31 0 chrY 7793389 7793453 -16919626 + AluS SINE Alu 223 288 -12 192 217 0 0 chrY 7793453 7793499 -16919580 + (GAATG)n Simple_repeat Simple_repeat 1 46 0 708 145 0 0 chrY 7793571 7793702 -16919377 + (GAATG)n Simple_repeat Simple_repeat 5 135 0 286 222 32 0 chrY 7793714 7793777 -16919302 + AluS SINE Alu 225 289 -12 1377 85 4 4 chrY 7793777 7794113 -16918966 + (GAATG)n Satellite Satellite 2 513 0 297 206 0 0 chrY 7994124 7994221 -16718858 + (GAATG)n Satellite Satellite 4 100 0 551 182 6 0 chrY 7994235 7994405 -16718674 + (GAATG)n Satellite Satellite 4 174 0 676 168 9 0 chrY 7994443 7994681 -16718398 + (GAATG)n Satellite Satellite 1 240 0 839 184 2 0 chrY 7994701 7995127 -16717952 + (GAATG)n Satellite Satellite 1 427 0 549 203 0 0 chrY 7995160 7995337 -16717742 + (GAATG)n Satellite Satellite 4 180 0 729 176 0 0 chrY 7995396 7995659 -16717420 + (GAATG)n Satellite Satellite 1 263 0 521 233 4 0 chrY 7995683 7995955 -16717124 + (GAATG)n Satellite Satellite 1 273 0 612 196 0 0 chrY 7995969 7996148 -16716931 + (GAATG)n Satellite Satellite 2 180 0 1101 167 1 0 chrY 7996164 7996873 -16716206 + (GAATG)n Satellite Satellite 1 710 0 795 180 0 3 chrY 7996914 7997280 -16715799 + (GAATG)n Satellite Satellite 1 364 0 678 195 0 0 chrY 7997301 7997647 -16715432 + (GAATG)n Satellite Satellite 1 346 0 486 216 0 0 chrY 7997666 7997842 -16715237 + (GAATG)n Satellite Satellite 4 179 0 675 205 5 3 chrY 7997878 7998265 -16714814 + (GAATG)n Satellite Satellite 1 388 0 1093 150 2 6 chrY 7998298 7999137 -16713942 + (GAATG)n Satellite Satellite 4 1011 0 204 150 25 0 chrY 7999137 7999177 -16713902 + (AATTG)n Simple_repeat Simple_repeat 2 42 0 366 224 0 0 chrY 7999181 7999328 -16713751 + (GAATG)n Satellite Satellite 4 150 0 735 190 0 0 chrY 7999361 7999718 -16713361 + (GAATG)n Satellite Satellite 1 357 0 654 179 0 0 chrY 7999751 7999924 -16713155 + (GAATG)n Satellite Satellite 3 175 0 747 169 0 0 chrY 7999954 8000131 -16712948 + (GAATG)n Satellite Satellite 4 180 0 693 195 0 7 chrY 8000144 8000817 -16712262 + (GAATG)n Satellite Satellite 1 668 0 939 156 0 4 chrY 8000837 8001196 -16711883 + (GAATG)n Satellite Satellite 1 536 0 258 205 0 0 chrY 8001251 8001329 -16711750 + (GAATG)n Satellite Satellite 3 80 0 773 154 0 16 chrY 8001393 8001575 -16711504 + (GAATG)n Satellite Satellite 1 179 0 222 180 0 0 chrY 8001594 8001655 -16711424 + (GAATG)n Satellite Satellite 5 65 0 801 153 0 0 chrY 8001674 8001850 -16711229 + (GAATG)n Satellite Satellite 4 179 0 885 171 0 0 chrY 8001928 8002326 -16710753 + (GAATG)n Satellite Satellite 1 398 0 445 211 6 6 chrY 8002362 8002542 -16710537 + (GAATG)n Satellite Satellite 1 180 0 836 173 6 4 chrY 8002598 8003084 -16709995 + (GAATG)n Satellite Satellite 1 487 0 432 179 0 0 chrY 8003132 8003249 -16709830 + (GAATG)n Satellite Satellite 4 120 0 651 178 0 0 chrY 8003267 8003436 -16709643 + (GAATG)n Satellite Satellite 1 169 0 730 171 4 4 chrY 8003448 8003690 -16709389 + (GAATG)n Satellite Satellite 1 242 0 945 172 0 0 chrY 8003716 8004017 -16709062 + (GAATG)n Satellite Satellite 1 301 0 1086 140 0 0 chrY 8004037 8004382 -16708697 + (GAATG)n Satellite Satellite 1 345 0 810 157 3 0 chrY 8004434 8004784 -16708295 + (GAATG)n Satellite Satellite 1 351 0 468 223 0 0 chrY 8004805 8004980 -16708099 + (GAATG)n Satellite Satellite 5 179 0 870 156 0 0 chrY 8005004 8005458 -16707621 + (GAATG)n Satellite Satellite 1 454 0 839 154 0 15 chrY 8005500 8005826 -16707253 + (GAATG)n Satellite Satellite 1 321 0 709 197 3 3 chrY 8005874 8006283 -16706796 + (GAATG)n Satellite Satellite 1 409 0 1158 85 0 0 chrY 8006329 8006506 -16706573 + (GAATG)n Satellite Satellite 4 180 0 1434 72 0 2 chrY 8006528 8006876 -16706203 + (GAATG)n Satellite Satellite 1 525 0 213 267 12 0 chrY 8006881 8006967 -16706112 + (AATAG)n Simple_repeat Simple_repeat 3 89 0 600 196 0 0 chrY 8006969 8007148 -16705931 + (GAATG)n Satellite Satellite 1 179 0 879 188 1 0 chrY 8007184 8008290 -16704789 + (GAATG)n Satellite Satellite 1 1107 0 705 199 0 0 chrY 8008303 8008736 -16704343 + (GAATG)n Satellite Satellite 1 433 0 468 214 0 0 chrY 8008748 8008921 -16704158 + (GAATG)n Satellite Satellite 2 174 0 939 152 0 4 chrY 8008937 8009297 -16703782 + (GAATG)n Satellite Satellite 2 538 0 816 151 0 0 chrY 8009323 8009502 -16703577 + (GAATG)n Satellite Satellite 1 179 0 684 193 0 0 chrY 8009549 8009986 -16703093 + (GAATG)n Satellite Satellite 1 437 0 960 124 0 0 chrY 8010004 8010182 -16702897 + (GAATG)n Satellite Satellite 1 178 0 795 171 0 0 chrY 8010256 8010503 -16702576 + (GAATG)n Satellite Satellite 1 247 0 840 156 0 0 chrY 8010518 8010698 -16702381 + (GAATG)n Satellite Satellite 1 180 0 714 143 0 0 chrY 8010718 8010865 -16702214 + (GAATG)n Satellite Satellite 4 150 0 1032 138 0 9 chrY 8010928 8011286 -16701793 + (GAATG)n Satellite Satellite 4 528 0 213 138 62 0 chrY 8011290 8011355 -16701724 - HSATII Satellite Satellite -82 88 20 655 164 6 6 chrY 8011365 8011542 -16701537 + (GAATG)n Satellite Satellite 4 180 0 798 116 6 28 chrY 8011565 8011746 -16701333 + (GAATG)n Satellite Satellite 4 180 0 366 197 0 0 chrY 8011764 8011881 -16701198 + (GAATG)n Satellite Satellite 4 120 0 564 200 0 0 chrY 8011914 8012094 -16700985 + (GAATG)n Satellite Satellite 1 180 0 872 128 0 23 chrY 8012140 8012359 -16700720 + (GAATG)n Satellite Satellite 1 214 0 689 163 6 0 chrY 8012394 8012572 -16700507 + (GAATG)n Satellite Satellite 2 180 0 864 167 3 3 chrY 8012609 8013810 -16699269 + (GAATG)n Satellite Satellite 1 1201 0 375 186 0 0 chrY 8013863 8013960 -16699119 + (GAATG)n Satellite Satellite 4 100 0 609 184 0 0 chrY 8014024 8014182 -16698897 + (GAATG)n Satellite Satellite 2 159 0 909 156 0 0 chrY 8014199 8014593 -16698486 + (GAATG)n Satellite Satellite 1 394 0 813 188 1 0 chrY 8014638 8015381 -16697698 + (GAATG)n Satellite Satellite 1 744 0 954 204 3 3 chrY 8015392 8016129 -16696950 + (GAATG)n Satellite Satellite 1 737 0 1023 132 0 4 chrY 8016177 8016534 -16696545 + (GAATG)n Satellite Satellite 2 535 0 1065 153 0 0 chrY 8016584 8016896 -16696183 + (GAATG)n Satellite Satellite 1 312 0 396 221 0 0 chrY 8016929 8017078 -16696001 + (GAATG)n Satellite Satellite 2 150 0 792 173 0 0 chrY 8017095 8017274 -16695805 + (GAATG)n Satellite Satellite 1 179 0 923 141 3 14 chrY 8017295 8017657 -16695422 + (GAATG)n Satellite Satellite 1 358 0 660 172 0 0 chrY 8017676 8017850 -16695229 + (GAATG)n Satellite Satellite 4 177 0 429 223 0 0 chrY 8017915 8018081 -16694998 + (GAATG)n Satellite Satellite 3 168 0 786 179 0 0 chrY 8018094 8018577 -16694502 + (GAATG)n Satellite Satellite 1 483 0 939 151 0 20 chrY 8018609 8018973 -16694106 + (GAATG)n Satellite Satellite 5 529 0 735 191 0 9 chrY 8019032 8019574 -16693505 + (GAATG)n Satellite Satellite 1 536 0 564 148 0 0 chrY 8019607 8019729 -16693350 + (GAATG)n Satellite Satellite 4 125 0 923 171 1 4 chrY 8019751 8020566 -16692513 + (GAATG)n Satellite Satellite 1 812 0 729 158 0 0 chrY 8020598 8020822 -16692257 + (GAATG)n Satellite Satellite 1 224 0 486 216 0 0 chrY 8020834 8021005 -16692074 + (GAATG)n Satellite Satellite 4 174 0 746 182 3 0 chrY 8021055 8021402 -16691677 + (GAATG)n Satellite Satellite 1 348 0 999 168 2 0 chrY 8021446 8021956 -16691123 + (GAATG)n Satellite Satellite 1 511 0 876 143 7 4 chrY 8022010 8022302 -16690777 + (GAATG)n Satellite Satellite 1 293 0 906 163 1 4 chrY 8022360 8022901 -16690178 + (GAATG)n Satellite Satellite 2 717 0 975 103 0 0 chrY 8022936 8023091 -16689988 + (GAATG)n Satellite Satellite 4 158 0 356 217 13 0 chrY 8023110 8023267 -16689812 + (GAATG)n Satellite Satellite 1 159 0 885 163 0 0 chrY 8023334 8023696 -16689383 + (GAATG)n Satellite Satellite 1 362 0 588 195 0 0 chrY 8023747 8023921 -16689158 + (GAATG)n Satellite Satellite 2 175 0 789 170 3 0 chrY 8023937 8024298 -16688781 + (GAATG)n Satellite Satellite 1 362 0 510 220 0 0 chrY 8024336 8024513 -16688566 + (GAATG)n Satellite Satellite 4 180 0 749 165 0 16 chrY 8024532 8024858 -16688221 + (GAATG)n Satellite Satellite 1 320 0 981 142 0 9 chrY 8024871 8025227 -16687852 + (GAATG)n Satellite Satellite 4 525 0 249 198 0 0 chrY 8025307 8025388 -16687691 + (GAATG)n Satellite Satellite 4 84 0 993 150 3 4 chrY 8025439 8025959 -16687120 + (GAATG)n Satellite Satellite 2 697 0 761 146 0 20 chrY 8025980 8026240 -16686839 + (GAATG)n Satellite Satellite 1 254 0 420 227 0 0 chrY 8026260 8026436 -16686643 + (GAATG)n Satellite Satellite 5 180 0 669 194 0 0 chrY 8026455 8026635 -16686444 + (GAATG)n Satellite Satellite 1 180 0 600 208 4 0 chrY 8026685 8027201 -16685878 + (GAATG)n Satellite Satellite 1 518 0 716 194 2 0 chrY 8027214 8027650 -16685429 + (GAATG)n Satellite Satellite 1 437 0 721 147 4 22 chrY 8027690 8027927 -16685152 + (GAATG)n Satellite Satellite 1 232 0 957 99 12 6 chrY 8027964 8028135 -16684944 + (GAATG)n Satellite Satellite 4 175 0 582 184 0 0 chrY 8028242 8028421 -16684658 + (GAATG)n Satellite Satellite 2 180 0 411 216 0 0 chrY 8028442 8028609 -16684470 + (GAATG)n Satellite Satellite 4 170 0 966 154 0 6 chrY 8028642 8029454 -16683625 + (GAATG)n Satellite Satellite 1 806 0 612 143 0 0 chrY 8029532 8029658 -16683421 + (GAATG)n Satellite Satellite 5 130 0 525 199 0 0 chrY 8029698 8029859 -16683220 + (GAATG)n Satellite Satellite 4 164 0 860 184 2 0 chrY 8029898 8030522 -16682557 + (GAATG)n Satellite Satellite 1 625 0 594 189 0 0 chrY 8030557 8030732 -16682347 + (GAATG)n Satellite Satellite 4 178 0 960 150 0 0 chrY 8030750 8031016 -16682063 + (GAATG)n Satellite Satellite 1 266 0 407 225 6 0 chrY 8031089 8031258 -16681821 + (GAATG)n Satellite Satellite 2 171 0 405 172 0 0 chrY 8031324 8031417 -16681662 + (GAATG)n Satellite Satellite 3 95 0 831 195 0 6 chrY 8031434 8032122 -16680957 + (GAATG)n Satellite Satellite 1 684 0 692 183 2 9 chrY 8032138 8032689 -16680390 + (GAATG)n Satellite Satellite 1 547 0 633 185 0 0 chrY 8032711 8032884 -16680195 + (GAATG)n Satellite Satellite 4 176 0 378 239 0 0 chrY 8032903 8033079 -16680000 + (GAATG)n Satellite Satellite 4 179 0 831 147 0 0 chrY 8033112 8033289 -16679790 + (GAATG)n Satellite Satellite 4 180 0 1200 140 0 2 chrY 8033363 8033957 -16679122 + (GAATG)n Satellite Satellite 1 772 0 1200 89 0 0 chrY 8033957 8034137 -16678942 + (GAATG)n Satellite Satellite 1 180 0 939 148 0 0 chrY 8034271 8034619 -16678460 + (GAATG)n Satellite Satellite 1 348 0 441 167 0 0 chrY 8034686 8034788 -16678291 + (GAATG)n Satellite Satellite 4 105 0 750 174 0 0 chrY 8034827 8034999 -16678080 + (GAATG)n Satellite Satellite 3 174 0 1080 152 0 7 chrY 8035046 8035583 -16677496 + (GAATG)n Satellite Satellite 4 708 0 453 226 0 0 chrY 8035631 8035808 -16677271 + (GAATG)n Satellite Satellite 4 180 0 291 141 0 0 chrY 8035856 8035920 -16677159 + (GAATG)n Satellite Satellite 2 65 0 678 184 0 0 chrY 8035932 8036111 -16676968 + (GAATG)n Satellite Satellite 1 179 0 797 160 0 19 chrY 8036131 8036396 -16676683 + (GAATG)n Satellite Satellite 1 259 0 537 208 0 0 chrY 8036416 8036594 -16676485 + (GAATG)n Satellite Satellite 3 180 0 870 158 4 0 chrY 8036631 8036877 -16676202 + (GAATG)n Satellite Satellite 1 247 0 753 168 0 0 chrY 8036926 8037105 -16675974 + (GAATG)n Satellite Satellite 1 179 0 943 174 2 10 chrY 8037120 8037834 -16675245 + (GAATG)n Satellite Satellite 4 884 0 1278 134 0 4 chrY 8037853 8038450 -16674629 + (GAATG)n Satellite Satellite 2 771 0 548 205 6 0 chrY 8038467 8038633 -16674446 + (GAATG)n Satellite Satellite 4 170 0 599 192 6 0 chrY 8038696 8038873 -16674206 + (GAATG)n Satellite Satellite 3 180 0 1116 126 0 0 chrY 8038912 8039373 -16673706 + (GAATG)n Satellite Satellite 1 461 0 1404 110 0 10 chrY 8039390 8039884 -16673195 + (GAATG)n Satellite Satellite 1 666 0 747 196 0 0 chrY 8039906 8040254 -16672825 + (GAATG)n Satellite Satellite 1 348 0 800 174 1 5 chrY 8040281 8040989 -16672090 + (GAATG)n Satellite Satellite 1 705 0 1028 155 5 10 chrY 8041019 8042300 -16670779 + (GAATG)n Satellite Satellite 4 1425 0 252 218 0 0 chrY 8042335 8042422 -16670657 + (GAATG)n Satellite Satellite 4 90 0 720 165 0 0 chrY 8042486 8042644 -16670435 + (GAATG)n Satellite Satellite 2 159 0 897 155 2 7 chrY 8042660 8043016 -16670063 + (GAATG)n Satellite Satellite 3 528 0 419 174 9 0 chrY 8043050 8043165 -16669914 + (GAATG)n Satellite Satellite 4 119 0 744 179 0 0 chrY 8043188 8043547 -16669532 + (GAATG)n Satellite Satellite 1 359 0 734 174 0 11 chrY 8043602 8043968 -16669111 + (GAATG)n Satellite Satellite 1 361 0 198 256 0 0 chrY 8043990 8044127 -16668952 + (GAATG)n Satellite Satellite 2 138 0 1071 167 2 5 chrY 8044168 8044593 -16668486 + (GAATG)n Satellite Satellite 1 602 0 1071 112 0 0 chrY 8044593 8044772 -16668307 + (GAATG)n Satellite Satellite 1 179 0 270 204 0 0 chrY 8044858 8044946 -16668133 + (GAATG)n Satellite Satellite 2 89 0 731 200 0 10 chrY 8044987 8045482 -16667597 + (GAATG)n Satellite Satellite 1 489 0 624 200 0 0 chrY 8045502 8045682 -16667397 + (GAATG)n Satellite Satellite 1 180 0 1062 126 0 1 chrY 8045693 8046186 -16666893 + (GAATG)n Satellite Satellite 1 672 0 753 175 0 0 chrY 8046238 8046744 -16666335 + (GAATG)n Satellite Satellite 1 506 0 810 183 0 0 chrY 8046762 8047275 -16665804 + (GAATG)n Satellite Satellite 1 513 0 1110 146 0 0 chrY 8047292 8047644 -16665435 + (GAATG)n Satellite Satellite 1 352 0 864 183 0 1 chrY 8047737 8048455 -16664624 + (GAATG)n Satellite Satellite 1 717 0 918 139 0 0 chrY 8048471 8048698 -16664381 + (GAATG)n Satellite Satellite 1 227 0 612 202 0 0 chrY 8048738 8049071 -16664008 + (GAATG)n Satellite Satellite 1 333 0 828 154 0 0 chrY 8049114 8049470 -16663609 + (GAATG)n Satellite Satellite 1 356 0 421 186 7 7 chrY 8049491 8049631 -16663448 + (GAATG)n Satellite Satellite 3 142 0 612 196 0 0 chrY 8049643 8049822 -16663257 + (GAATG)n Satellite Satellite 2 180 0 443 196 0 27 chrY 8049868 8050052 -16663027 + (GAATG)n Satellite Satellite 2 180 0 921 168 0 9 chrY 8050093 8050520 -16662559 + (GAATG)n Satellite Satellite 1 422 0 699 183 0 0 chrY 8050532 8050712 -16662367 + (GAATG)n Satellite Satellite 1 180 0 777 162 0 0 chrY 8050748 8050921 -16662158 + (GAATG)n Satellite Satellite 2 174 0 1016 106 6 0 chrY 8050947 8051126 -16661953 + (GAATG)n Satellite Satellite 1 180 0 879 171 0 0 chrY 8051150 8051507 -16661572 + (GAATG)n Satellite Satellite 1 357 0 478 198 11 0 chrY 8051540 8051717 -16661362 + (GAATG)n Satellite Satellite 2 180 0 1014 120 0 0 chrY 8051740 8051915 -16661164 + (GAATG)n Satellite Satellite 4 178 0 873 187 0 0 chrY 8051938 8052293 -16660786 + (GAATG)n Satellite Satellite 1 355 0 675 178 0 0 chrY 8052317 8052564 -16660515 + (GAATG)n Satellite Satellite 1 247 0 1107 145 1 5 chrY 8052617 8053437 -16659642 + (GAATG)n Satellite Satellite 1 988 0 972 121 0 0 chrY 8053437 8053610 -16659469 + (GAATG)n Satellite Satellite 2 174 0 206 259 9 0 chrY 8053631 8053747 -16659332 + (AATAG)n Simple_repeat Simple_repeat 5 121 0 957 153 0 0 chrY 8053765 8054125 -16658954 + (GAATG)n Satellite Satellite 1 360 0 771 170 0 0 chrY 8054166 8054670 -16658409 + (GAATG)n Satellite Satellite 1 504 0 973 174 2 2 chrY 8054699 8055159 -16657920 + (GAATG)n Satellite Satellite 1 460 0 738 161 0 0 chrY 8055173 8055347 -16657732 + (GAATG)n Satellite Satellite 4 177 0 1101 128 0 0 chrY 8055380 8055750 -16657329 + (GAATG)n Satellite Satellite 1 370 0 1020 129 0 14 chrY 8055791 8056152 -16656927 + (GAATG)n Satellite Satellite 1 356 0 543 201 0 0 chrY 8056190 8056369 -16656710 + (GAATG)n Satellite Satellite 2 180 0 741 172 0 0 chrY 8056385 8056565 -16656514 + (GAATG)n Satellite Satellite 1 180 0 798 186 2 14 chrY 8056586 8057028 -16656051 + (GAATG)n Satellite Satellite 1 436 0 515 201 6 0 chrY 8057039 8057218 -16655861 + (GAATG)n Satellite Satellite 1 180 0 587 174 0 22 chrY 8057232 8057416 -16655663 + (GAATG)n Satellite Satellite 1 180 0 1149 155 0 2 chrY 8057452 8058277 -16654802 + (GAATG)n Satellite Satellite 1 1001 0 813 149 0 0 chrY 8058340 8058515 -16654564 + (GAATG)n Satellite Satellite 1 175 0 885 162 0 11 chrY 8058534 8058996 -16654083 + (GAATG)n Satellite Satellite 1 456 0 599 199 3 14 chrY 8059008 8059361 -16653718 + (GAATG)n Satellite Satellite 1 348 0 569 194 6 0 chrY 8059388 8059553 -16653526 + (GAATG)n Satellite Satellite 4 169 0 765 158 0 0 chrY 8059571 8059748 -16653331 + (GAATG)n Satellite Satellite 4 180 0 1239 161 0 1 chrY 8059761 8060343 -16652736 + (GAATG)n Satellite Satellite 1 761 0 849 180 0 0 chrY 8060376 8060710 -16652369 + (GAATG)n Satellite Satellite 1 334 0 782 148 6 0 chrY 8060747 8060923 -16652156 + (GAATG)n Satellite Satellite 3 179 0 798 157 0 0 chrY 8060946 8061192 -16651887 + (GAATG)n Satellite Satellite 1 246 0 1005 126 0 11 chrY 8061206 8061567 -16651512 + (GAATG)n Satellite Satellite 1 533 0 687 203 0 0 chrY 8061650 8062193 -16650886 + (GAATG)n Satellite Satellite 1 543 0 861 140 0 0 chrY 8062205 8062369 -16650710 + (GAATG)n Satellite Satellite 2 165 0 282 132 0 0 chrY 8062381 8062434 -16650645 + (GAATG)n Satellite Satellite 2 54 0 747 174 5 0 chrY 8062451 8062888 -16650191 + (GAATG)n Satellite Satellite 1 439 0 947 124 6 0 chrY 8062913 8063090 -16649989 + (GAATG)n Satellite Satellite 3 180 0 357 191 0 0 chrY 8063113 8063223 -16649856 + (GAATG)n Satellite Satellite 5 114 0 735 169 0 0 chrY 8063243 8063420 -16649659 + (GAATG)n Satellite Satellite 3 179 0 180 111 0 0 chrY 8063476 8063503 -16649576 + (GAGTG)n Simple_repeat Simple_repeat 4 30 0 951 130 0 0 chrY 8063522 8063995 -16649084 + (GAATG)n Satellite Satellite 1 473 0 450 207 0 0 chrY 8064007 8064171 -16648908 + (GAATG)n Satellite Satellite 1 164 0 852 162 3 0 chrY 8064201 8064545 -16648534 + (GAATG)n Satellite Satellite 1 345 0 1239 119 0 0 chrY 8064566 8064925 -16648154 + (GAATG)n Satellite Satellite 1 359 0 1016 132 3 6 chrY 8064940 8065475 -16647604 + (GAATG)n Satellite Satellite 1 712 0 804 163 0 0 chrY 8065517 8065765 -16647314 + (GAATG)n Satellite Satellite 1 248 0 2172 165 13 10 chrY 8065771 8066165 -16646914 - Tigger2a DNA MER2_type -39 395 1 505 214 62 24 chrY 8066204 8066384 -16646695 - MLT1I LTR MaLR -3 406 244 1773 212 49 16 chrY 8066754 8067206 -16645873 - MLT1C LTR MaLR 0 467 1 707 328 21 18 chrY 8067401 8067730 -16645349 + MLT1I LTR MaLR 5 334 -75 429 309 62 29 chrY 8067750 8068022 -16645057 + L1ME3A LINE L1 5597 5877 -293 597 106 28 28 chrY 8068367 8068547 -16644532 + (TA)n Simple_repeat Simple_repeat 1 180 0 37 39 0 0 chrY 8068547 8068598 -16644481 + AT_rich Low_complexity Low_complexity 1 51 0 617 85 34 34 chrY 8068598 8068774 -16644305 + (TTATA)n Simple_repeat Simple_repeat 5 180 0 329 75 118 0 chrY 8068741 8068902 -16644177 + (TA)n Simple_repeat Simple_repeat 1 180 0 * 286 340 65 1 chrY 8069601 8069862 -16643217 - L1MDa LINE L1 -860 1630 1397 705 259 109 47 chrY 8069912 8070033 -16643046 - L1MDa LINE L1 -4918 1201 1089 1837 152 3 34 chrY 8070033 8070330 -16642749 - AluSx SINE Alu -24 288 1 705 259 109 47 chrY 8070330 8070787 -16642292 - L1MDa LINE L1 -5030 1089 587 829 235 0 24 chrY 8070948 8071118 -16641961 + FAM SINE Alu 1 166 -9 10608 21 0 1 chrY 8071165 8073232 -16639847 - L1HS LINE L1 0 6155 4090 7117 17 1 2 chrY 8073231 8074079 -16639000 + L1HS LINE L1 5291 6139 -16 * 244 0 56 0 chrY 8074079 8074115 -16638964 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 7117 17 1 2 chrY 8074115 8074132 -16638947 + L1HS LINE L1 6139 6155 0 317 155 0 17 chrY 8074229 8074287 -16638792 - FAM SINE Alu -83 92 36 2235 113 0 25 chrY 8074418 8074822 -16638257 + AluSx SINE Alu 3 398 0 335 250 19 37 chrY 8075556 8075664 -16637415 + HAL1b LINE L1 1243 1348 0 2215 133 0 0 chrY 8075677 8075985 -16637094 + AluSx SINE Alu 1 308 -4 229 351 30 61 chrY 8076588 8076719 -16636360 + MIR SINE MIR 21 147 -115 870 113 0 0 chrY 8076720 8076853 -16636226 + (TGGA)n Simple_repeat Simple_repeat 1 133 0 2053 114 0 0 chrY 8076869 8077133 -16635946 + AluSx SINE Alu 33 296 -16 250 98 39 0 chrY 8077134 8077185 -16635894 + (TAGA)n Simple_repeat Simple_repeat 2 54 0 337 246 235 11 chrY 8077398 8077585 -16635494 - HAL1 LINE L1 -154 2353 2125 453 230 29 83 chrY 8077586 8077781 -16635298 + MER20B DNA MER1_type 1 197 -22 407 206 9 19 chrY 8077798 8077905 -16635174 - HAL1 LINE L1 -378 2129 2024 * 2378 249 103 81 chrY 8077901 8078185 -16634894 - HAL1 LINE L1 -1044 1463 1187 2173 137 10 0 chrY 8078185 8078492 -16634587 - AluSx SINE Alu -2 310 1 2378 249 103 81 chrY 8078492 8079596 -16633483 - HAL1 LINE L1 -1320 1187 45 983 281 67 66 chrY 8079636 8079988 -16633091 + L2 LINE L2 2660 3006 -307 2329 122 0 0 chrY 8079988 8080299 -16632780 - AluY SINE Alu 0 311 1 983 281 67 66 chrY 8080299 8080560 -16632519 + L2 LINE L2 3006 3265 -48 675 232 310 12 chrY 8080563 8080603 -16632476 - MLT2B1 LTR ERVL 0 520 493 234 0 0 0 chrY 8080603 8080629 -16632450 + (TG)n Simple_repeat Simple_repeat 1 26 0 675 232 310 12 chrY 8080629 8080911 -16632168 - MLT2B1 LTR ERVL -27 493 102 555 222 0 0 chrY 8080911 8081037 -16632042 + L1PB4 LINE L1 6031 6156 0 27 0 0 0 chrY 8081037 8081064 -16632015 + AT_rich Low_complexity Low_complexity 1 27 0 2325 112 0 0 chrY 8081131 8081436 -16631643 + AluY SINE Alu 1 305 -6 277 243 0 0 chrY 8081457 8081527 -16631552 - MLT2B1 LTR ERVL -450 70 1 16166 186 17 20 chrY 8081589 8085809 -16627270 + L1PA13 LINE L1 1 4209 -2588 2212 142 0 0 chrY 8085809 8086119 -16626960 - AluSx SINE Alu -2 310 1 16166 186 17 20 chrY 8086119 8087396 -16625683 + L1PA13 LINE L1 4209 5489 -1308 2118 114 37 0 chrY 8087398 8087695 -16625384 + AluSp SINE Alu 3 310 -3 435 137 0 0 chrY 8087695 8087768 -16625311 + (GA)n Simple_repeat Simple_repeat 1 73 0 333 117 0 0 chrY 8087780 8087840 -16625239 + (CAGG)n Simple_repeat Simple_repeat 2 61 0 6000 110 19 1 chrY 8087842 8089155 -16623924 + L1PA13 LINE L1 5484 6813 -1 2314 110 3 0 chrY 8090824 8091132 -16621947 - AluSx SINE Alu -1 311 3 2162 77 42 3 chrY 8092441 8092726 -16620353 + AluY SINE Alu 16 311 0 2227 68 0 7 chrY 8092805 8093086 -16619993 + AluY SINE Alu 1 279 -32 260 119 75 0 chrY 8093086 8093153 -16619926 + GA-rich Low_complexity Low_complexity 3 74 0 1907 58 0 0 chrY 8093221 8093444 -16619635 + AluY SINE Alu 1 223 -88 34897 58 41 2 chrY 8093468 8097943 -16615136 - L1P LINE L1 -1496 4650 1 1329 232 10 7 chrY 8097963 8098252 -16614827 - AluJb SINE Alu -22 290 1 637 179 72 68 chrY 8098635 8098842 -16614237 + MER3 DNA MER1_type 1 208 -1 2231 175 37 30 chrY 8098994 8099422 -16613657 + Tigger2a DNA MER2_type 1 431 -3 194 376 47 0 chrY 8099587 8099672 -16613407 + L2 LINE L2 3167 3255 -17 1078 111 0 17 chrY 8099680 8099916 -16613163 + (GGAA)n Simple_repeat Simple_repeat 1 231 0 815 261 31 0 chrY 8099947 8100142 -16612937 + MLT2B1 LTR ERVL 1 201 -319 6037 109 55 2 chrY 8100147 8101034 -16612045 - L1P3 LINE L1 -4839 1622 689 12145 106 3 14 chrY 8101037 8103626 -16609453 + L1PA7 LINE L1 3565 6154 0 547 251 0 82 chrY 8103651 8103822 -16609257 + MLT2B1 LTR ERVL 228 384 -136 * 1081 241 78 4 chrY 8103811 8104087 -16608992 + MLT2B1 LTR ERVL 275 520 0 2116 185 3 8 chrY 8104636 8105025 -16608054 + MLT1B LTR MaLR 4 390 0 1389 153 5 1 chrY 8105034 8105263 -16607816 + MLT1B LTR MaLR 162 467 0 1097 215 18 9 chrY 8105264 8105492 -16607587 + MLT1B LTR MaLR 159 388 -2 189 303 176 14 chrY 8106792 8106934 -16606145 + L2 LINE L2 1047 1211 -2103 1079 257 12 4 chrY 8106988 8107229 -16605850 + Tigger7 DNA MER2_type 1 243 -490 257 220 0 0 chrY 8107233 8107283 -16605796 + Tigger7 DNA MER2_type 2259 2308 -183 247 317 58 0 chrY 8107903 8108023 -16605056 + LTR16C LTR ERVL 365 491 0 1320 174 0 5 chrY 8108137 8108361 -16604718 + AluSg/x SINE Alu 87 309 -3 2073 138 10 56 chrY 8108522 8108912 -16604167 - L1PA16 LINE L1 -9 6157 5786 366 239 9 46 chrY 8109476 8109585 -16603494 - MLT1D LTR MaLR -399 106 2 1456 217 75 53 chrY 8109765 8109797 -16603282 + MLT1D LTR MaLR 2 32 -473 1676 150 75 31 chrY 8109797 8110156 -16602923 - THE1C LTR MaLR 0 375 1 1456 217 75 53 chrY 8110156 8110616 -16602463 + MLT1D LTR MaLR 32 505 0 2735 143 19 15 chrY 8110929 8111392 -16601687 - MER4C LTR ERV1 0 465 1 2550 126 6 1 chrY 8112078 8112467 -16600612 + MLT1B LTR MaLR 1 467 0 1138 229 4 0 chrY 8112468 8112699 -16600380 + MLT1B LTR MaLR 159 390 0 2062 132 7 7 chrY 8113914 8114210 -16598869 - AluSg1 SINE Alu -13 296 1 1900 158 14 0 chrY 8114214 8114511 -16598568 - AluSx SINE Alu -11 301 1 183 139 0 0 chrY 8114819 8114855 -16598224 + (TG)n Simple_repeat Simple_repeat 1 36 0 1509 207 29 32 chrY 8114916 8115395 -16597684 + MLT1A1 LTR MaLR 1 365 0 1034 195 9 9 chrY 8115395 8115605 -16597474 + MLT1B LTR MaLR 158 367 -23 3943 141 134 23 chrY 8115607 8116940 -16596139 - pTR5 LTR ERV1 0 2606 1524 904 231 31 0 chrY 8116965 8117190 -16595889 + MLT1B LTR MaLR 159 390 0 1828 171 31 20 chrY 8118365 8118726 -16594353 - MLT1A1 LTR MaLR 0 626 1 340 219 20 60 chrY 8118740 8118891 -16594188 + (TATATG)n Simple_repeat Simple_repeat 2 146 0 24 67 0 0 chrY 8119837 8119882 -16593197 + AT_rich Low_complexity Low_complexity 1 45 0 1662 158 4 11 chrY 8121800 8122060 -16591019 + AluSq SINE Alu 18 275 -38 452 32 16 0 chrY 8122074 8122136 -16590943 + (TAAA)n Simple_repeat Simple_repeat 2 64 0 1845 214 77 0 chrY 8122449 8122850 -16590229 - MSTB1 LTR MaLR 0 432 1 246 335 59 30 chrY 8122876 8123079 -16590000 - L2 LINE L2 -993 2321 2113 3259 177 14 67 chrY 8123195 8123925 -16589154 + LTR8 LTR ERV1 1 691 0 324 203 0 14 chrY 8124003 8124077 -16589002 + LTR30 LTR ERV1 548 620 -102 4313 155 26 19 chrY 8124216 8124820 -16588259 - MER4E LTR ERV1 0 779 167 1696 132 0 84 chrY 8124820 8125116 -16587963 + AluSx SINE Alu 29 299 -13 4313 155 26 19 chrY 8125116 8125284 -16587795 - MER4E LTR ERV1 -612 167 2 1894 117 83 6 chrY 8125336 8125698 -16587381 - LTR7 LTR ERV1 0 450 1 35661 151 38 32 chrY 8125698 8133050 -16580029 - HERVH LTR ERV1 0 7713 1 2129 133 65 57 chrY 8133050 8133523 -16579556 - LTR7 LTR ERV1 0 450 1 2406 131 30 0 chrY 8134458 8134825 -16578254 - MER41A LTR ERV1 -176 378 1 1957 188 43 35 chrY 8134828 8135380 -16577699 + LTR10E LTR ERV1 1 618 -15 1138 29 0 0 chrY 8135412 8135548 -16577531 - L1PA4 LINE L1 -935 5211 5076 7775 41 5 0 chrY 8135548 8136487 -16576592 + L1PA4 LINE L1 5213 6155 0 1242 182 8 8 chrY 8136820 8137062 -16576017 - MLT1B LTR MaLR 0 390 149 1147 193 5 9 chrY 8137069 8137287 -16575792 - MLT1B LTR MaLR -16 374 158 2194 150 27 7 chrY 8137287 8137666 -16575413 - MLT1B LTR MaLR 0 467 5 208 286 200 23 chrY 8137677 8137852 -16575227 + MIR SINE MIR 57 262 0 3856 157 2 8 chrY 8137889 8138508 -16574571 + L1PB4 LINE L1 5538 6152 -4 433 102 0 0 chrY 8138748 8138807 -16574272 + MSTA LTR MaLR 1 59 -369 399 274 11 0 chrY 8138910 8139005 -16574074 + MER5A DNA MER1_type 14 109 -80 242 302 23 0 chrY 8140596 8140682 -16572397 + (CATATA)n Simple_repeat Simple_repeat 6 93 0 378 182 51 14 chrY 8140682 8140984 -16572095 + (TAGA)n Simple_repeat Simple_repeat 1 313 0 252 244 13 26 chrY 8140997 8141099 -16571980 + (CATA)n Simple_repeat Simple_repeat 1 100 0 461 245 65 38 chrY 8141177 8141361 -16571718 + MER53 DNA DNA 1 189 0 1731 159 4 11 chrY 8141419 8141690 -16571389 + AluSx SINE Alu 11 279 -33 1095 93 6 22 chrY 8141705 8142252 -16570827 + (GAAA)n Simple_repeat Simple_repeat 1 537 0 286 125 62 0 chrY 8142820 8142900 -16570179 + (TAGA)n Simple_repeat Simple_repeat 1 85 0 712 124 47 0 chrY 8143088 8143257 -16569822 + (TCTA)n Simple_repeat Simple_repeat 2 178 0 254 170 50 28 chrY 8143268 8143409 -16569670 + (TCTA)n Simple_repeat Simple_repeat 2 145 0 535 145 50 20 chrY 8143439 8143740 -16569339 + (TCTA)n Simple_repeat Simple_repeat 1 310 0 208 147 67 0 chrY 8143775 8143850 -16569229 + (TCTA)n Simple_repeat Simple_repeat 2 81 0 235 329 0 0 chrY 8143854 8143939 -16569140 + (TATATG)n Simple_repeat Simple_repeat 6 90 0 389 208 21 0 chrY 8144150 8144246 -16568833 + (CATA)n Simple_repeat Simple_repeat 1 98 0 3976 201 31 12 chrY 8144510 8145278 -16567801 - LTR39 LTR ERV1 0 783 1 1656 226 11 25 chrY 8145555 8145923 -16567156 + MLT2D LTR ERVL 7 369 -45 630 194 0 17 chrY 8145959 8146139 -16566940 + (TA)n Simple_repeat Simple_repeat 2 178 0 322 192 50 71 chrY 8146144 8146243 -16566836 - L1MC4 LINE L1 -1337 6705 6609 229 286 0 0 chrY 8146243 8146313 -16566766 + (TA)n Simple_repeat Simple_repeat 1 70 -1101 1970 136 26 163 chrY 8146313 8146392 -16566687 - Tigger2a DNA MER2_type -2274 434 346 1761 156 17 0 chrY 8146392 8146680 -16566399 + AluSx SINE Alu 5 297 -15 1970 136 26 163 chrY 8146680 8146807 -16566272 - Tigger2a DNA MER2_type -2362 346 203 1832 164 10 0 chrY 8146807 8147100 -16565979 - AluSx SINE Alu -16 296 1 1970 136 26 163 chrY 8147100 8147394 -16565685 - Tigger2a DNA MER2_type -2505 203 2 229 286 0 0 chrY 8147394 8147414 -16565665 + (TA)n Simple_repeat Simple_repeat 69 1171 0 1606 199 0 3 chrY 8147809 8148260 -16564819 - AluJo SINE Alu 0 450 1 358 83 0 0 chrY 8148751 8148799 -16564280 + Alu SINE Alu 247 294 -6 849 192 10 5 chrY 8148799 8148992 -16564087 - L1P5 LINE L1 -686 5470 5277 849 171 0 0 chrY 8149989 8150159 -16562920 + (CA)n Simple_repeat Simple_repeat 1 170 0 1935 156 0 7 chrY 8150233 8150528 -16562551 - AluSx SINE Alu -19 293 1 1485 245 32 64 chrY 8150652 8150944 -16562135 + MLT1D LTR MaLR 24 295 -210 3540 111 82 48 chrY 8150944 8151530 -16561549 - MER4B LTR ERV1 -4 606 1 1485 245 32 64 chrY 8151530 8151735 -16561344 + MLT1D LTR MaLR 295 505 0 196 294 223 38 chrY 8152128 8152312 -16560767 + L2 LINE L2 2879 3096 -217 339 96 0 0 chrY 8152429 8152481 -16560598 + (TTAGGG)n Simple_repeat Simple_repeat 2 53 0 188 274 0 39 chrY 8152689 8152740 -16560339 - MER5B DNA MER1_type -1 177 129 245 363 24 8 chrY 8153781 8153905 -16559174 + MER5B DNA MER1_type 27 152 -26 2415 122 48 20 chrY 8153976 8154330 -16558749 + THE1B LTR MaLR 1 364 0 1063 291 104 3 chrY 8154884 8155221 -16557858 - MLT1D LTR MaLR 0 505 135 658 235 20 7 chrY 8155486 8155639 -16557440 - MLT1A1 LTR MaLR 0 365 211 1753 200 19 6 chrY 8155710 8156070 -16557009 - MLT1A1 LTR MaLR 0 365 1 1568 140 75 11 chrY 8157092 8157383 -16555696 - AluJb SINE Alu 0 308 1 804 240 91 33 chrY 8157823 8158119 -16554960 + MLT1C LTR MaLR 27 348 -119 340 195 37 12 chrY 8158144 8158226 -16554853 + MLT1D LTR MaLR 278 361 -144 703 251 51 51 chrY 8158243 8158542 -16554537 + MLT1C LTR MaLR 8 309 -158 1361 136 0 9 chrY 8158542 8158755 -16554324 + L1MA2 LINE L1 6091 6301 -3 703 251 51 51 chrY 8158755 8158770 -16554309 + MLT1C LTR MaLR 308 322 -145 269 229 0 0 chrY 8158777 8158838 -16554241 + MLT1D LTR MaLR 541 601 -25 1792 160 17 0 chrY 8158864 8159151 -16553928 + AluSx SINE Alu 1 292 -20 642 220 58 119 chrY 8161107 8161485 -16551594 + MLT1D LTR MaLR 7 361 -144 308 161 0 48 chrY 8161538 8161600 -16551479 + FLAM_A SINE Alu 75 133 0 1071 220 70 39 chrY 8161610 8161896 -16551183 + AluJo SINE Alu 2 296 -6 487 311 22 28 chrY 8161925 8162105 -16550974 + MLT1D LTR MaLR 316 494 -132 368 164 15 0 chrY 8162283 8162350 -16550729 - L1PA16 LINE L1 -13 6153 6086 633 178 7 105 chrY 8162350 8162502 -16550577 + MLT1C LTR MaLR 367 503 -2 334 261 9 9 chrY 8162961 8163072 -16550007 + LTR16C LTR ERVL 371 481 -10 35 41 0 0 chrY 8163483 8163532 -16549547 + AT_rich Low_complexity Low_complexity 1 49 0 215 98 66 0 chrY 8163596 8163657 -16549422 + (TA)n Simple_repeat Simple_repeat 2 66 0 227 220 52 46 chrY 8163675 8163743 -16549336 + (TATAA)n Simple_repeat Simple_repeat 1 67 -107 1956 130 14 3 chrY 8163743 8164028 -16549051 - AluSg SINE Alu -15 295 8 227 220 52 46 chrY 8164028 8164132 -16548947 + (TATAA)n Simple_repeat Simple_repeat 67 174 0 1927 177 3 0 chrY 8164371 8164682 -16548397 + AluJb SINE Alu 1 312 0 2321 123 23 6 chrY 8164914 8165263 -16547816 + THE1A LTR MaLR 1 355 0 3929 156 35 7 chrY 8165698 8166135 -16546944 - L1PB4 LINE L1 -17 6139 5675 1729 185 0 7 chrY 8166135 8166432 -16546647 - AluSg SINE Alu -15 295 1 3929 156 35 7 chrY 8166432 8166678 -16546401 - L1PB4 LINE L1 -481 5675 5437 1966 157 7 0 chrY 8166799 8167098 -16545981 + AluSx SINE Alu 1 301 -11 4542 140 31 70 chrY 8167226 8168041 -16545038 + LTR1 LTR ERV1 3 785 0 456 250 19 9 chrY 8168101 8168202 -16544877 + MLT1D LTR MaLR 1 102 -403 376 96 0 170 chrY 8168202 8168296 -16544783 + MADE1 DNA Mariner 1 78 -2 1074 188 309 3 chrY 8168296 8168600 -16544479 + MLT1D LTR MaLR 98 494 -11 1968 157 10 0 chrY 8168806 8169112 -16543967 - AluSx SINE Alu -3 309 1 244 178 27 27 chrY 8169745 8169818 -16543261 + A-rich Low_complexity Low_complexity 5 77 0 248 133 40 13 chrY 8169849 8169924 -16543155 + (TAGA)n Simple_repeat Simple_repeat 4 80 0 3515 143 8 21 chrY 8169925 8170455 -16542624 - MER1A DNA MER1_type 0 527 5 191 152 22 0 chrY 8170537 8170583 -16542496 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 2031 124 17 3 chrY 8170845 8171136 -16541943 + AluSx SINE Alu 1 295 -17 1021 189 64 161 chrY 8171158 8171438 -16541641 + L1MB5 LINE L1 5749 6055 -119 22503 42 0 1 chrY 8171438 8172326 -16540753 + L1PA4 LINE L1 2734 3621 -2534 2915 6 0 0 chrY 8172326 8172637 -16540442 + AluYa5 SINE Alu 1 311 0 22503 42 0 1 chrY 8172637 8175196 -16537883 + L1PA4 LINE L1 3621 6153 -2 1021 189 64 161 chrY 8175196 8175304 -16537775 + L1MB5 LINE L1 6055 6086 -88 3165 156 39 25 chrY 8175304 8175824 -16537255 + MER1A DNA MER1_type 1 527 0 1021 189 64 161 chrY 8175824 8175905 -16537174 + L1MB5 LINE L1 6086 6173 -1 1957 141 9 41 chrY 8175981 8176301 -16536778 + AluSg SINE Alu 1 310 0 2258 99 0 6 chrY 8177494 8177807 -16535272 - AluY SINE Alu 0 311 1 496 160 66 1 chrY 8178026 8178138 -16534941 + L1MB3 LINE L1 5660 5783 -400 288 0 0 0 chrY 8178153 8178185 -16534894 + (A)n Simple_repeat Simple_repeat 1 32 0 1594 161 62 44 chrY 8178185 8178333 -16534746 + L1MB3 LINE L1 5762 5906 -277 1873 184 0 0 chrY 8178333 8178632 -16534447 + AluJo SINE Alu 5 303 -9 1594 161 62 44 chrY 8178632 8178868 -16534211 + L1MB3 LINE L1 5906 6153 -30 31 0 0 0 chrY 8178882 8178913 -16534166 + AT_rich Low_complexity Low_complexity 1 31 0 263 161 18 0 chrY 8178917 8178973 -16534106 + (CA)n Simple_repeat Simple_repeat 2 58 0 1681 170 0 14 chrY 8179006 8179288 -16533791 + AluJb SINE Alu 5 282 -30 723 54 0 0 chrY 8179288 8179380 -16533699 + (TAGA)n Simple_repeat Simple_repeat 2 93 0 184 98 196 39 chrY 8180031 8180082 -16532997 + L2 LINE L2 1965 2023 -1291 24 0 0 0 chrY 8180382 8180406 -16532673 + AT_rich Low_complexity Low_complexity 1 24 0 2038 131 3 20 chrY 8180383 8180688 -16532391 - AluSx SINE Alu -9 303 4 457 236 115 7 chrY 8180731 8180879 -16532200 - MIR SINE MIR -7 255 92 1484 226 68 53 chrY 8181424 8181898 -16531181 - MLT1D LTR MaLR 0 505 25 1113 221 83 28 chrY 8181907 8182232 -16530847 + MLT1C LTR MaLR 110 452 -15 3092 143 41 19 chrY 8182911 8183427 -16529652 + MER1A DNA MER1_type 1 527 0 1019 197 32 9 chrY 8183678 8183896 -16529183 - L1MC1 LINE L1 0 6333 6111 1947 149 0 0 chrY 8183996 8184278 -16528801 + AluSx SINE Alu 1 282 -30 2192 96 13 19 chrY 8184474 8184787 -16528292 - AluY SINE Alu 0 311 1 187 320 52 31 chrY 8186724 8186821 -16526258 - L2 LINE L2 -5 3267 3169 547 282 41 0 chrY 8187040 8187210 -16525869 - L1MB5 LINE L1 -8 6166 5990 1445 199 62 10 chrY 8187497 8187655 -16525424 - AluJb SINE Alu -5 307 159 264 30 0 0 chrY 8187655 8187688 -16525391 + (TTTG)n Simple_repeat Simple_repeat 1 33 0 1445 199 62 10 chrY 8187688 8187821 -16525258 - AluJb SINE Alu -153 159 1 197 191 0 95 chrY 8187870 8187933 -16525146 - L2 LINE L2 0 3272 3216 226 121 0 0 chrY 8188942 8188975 -16524104 + Alu SINE Alu 137 169 -134 1643 156 71 45 chrY 8188975 8189327 -16523752 - LTR7 LTR ERV1 0 450 90 646 113 47 0 chrY 8189328 8189434 -16523645 - AluSp/q SINE Alu -1 312 202 604 141 0 0 chrY 8189435 8189527 -16523552 - LTR7 LTR ERV1 -358 92 1 1268 181 7 65 chrY 8189527 8189839 -16523240 + AluSq SINE Alu 30 313 0 342 0 0 0 chrY 8191742 8191780 -16521299 + (A)n Simple_repeat Simple_repeat 1 38 0 2089 108 3 0 chrY 8192577 8192863 -16520216 - AluSp SINE Alu -26 287 1 955 105 0 8 chrY 8193391 8193524 -16519555 - AluSp SINE Alu -181 132 1 180 0 0 0 chrY 8195501 8195521 -16517558 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 2516 135 8 3 chrY 8195523 8195915 -16517164 - L1PA8A LINE L1 -18 6113 5720 522 0 0 0 chrY 8196178 8196236 -16516843 + (TA)n Simple_repeat Simple_repeat 2 59 0 364 186 47 17 chrY 8197831 8198003 -16515076 + (TCTA)n Simple_repeat Simple_repeat 2 178 0 551 110 27 27 chrY 8198127 8198273 -16514806 + (TCTA)n Simple_repeat Simple_repeat 4 149 0 370 250 12 0 chrY 8198278 8198358 -16514721 + MER20 DNA MER1_type 4 84 -135 278 353 119 15 chrY 8198578 8199100 -16513979 + L2 LINE L2 2294 2869 -445 762 161 0 8 chrY 8199140 8199264 -16513815 - AluSc SINE Alu -21 288 166 496 116 0 0 chrY 8199260 8199329 -16513750 - AluS SINE Alu -234 79 11 * 905 234 23 15 chrY 8199464 8199700 -16513379 - MER20 DNA MER1_type -17 202 1 296 133 17 0 chrY 8199702 8199762 -16513317 + (CAGA)n Simple_repeat Simple_repeat 4 64 0 488 149 57 40 chrY 8199771 8199946 -16513133 + (TAGA)n Simple_repeat Simple_repeat 3 180 0 741 125 56 17 chrY 8199970 8200443 -16512636 + (TAGA)n Simple_repeat Simple_repeat 1 491 0 373 145 52 29 chrY 8200454 8200626 -16512453 + (TAGA)n Simple_repeat Simple_repeat 3 178 0 336 289 10 0 chrY 8200667 8200764 -16512315 - MER20 DNA MER1_type -1 218 121 181 304 29 39 chrY 8201121 8201223 -16511856 + L2 LINE L2 2950 3050 -263 1210 218 23 4 chrY 8201620 8201886 -16511193 - L1MB5 LINE L1 0 6174 5904 3014 127 5 5 chrY 8201918 8202344 -16510735 - MER1A DNA MER1_type 0 529 104 212 365 32 25 chrY 8202344 8202621 -16510458 - L2 LINE L2 -1034 2280 2002 368 267 23 0 chrY 8202672 8202848 -16510231 + (TA)n Simple_repeat Simple_repeat 1 180 0 25 31 0 0 chrY 8202855 8202887 -16510192 + AT_rich Low_complexity Low_complexity 1 32 0 441 221 29 20 chrY 8202889 8203294 -16509785 + (TA)n Simple_repeat Simple_repeat 1 408 0 651 169 33 12 chrY 8203314 8203653 -16509426 + (TA)n Simple_repeat Simple_repeat 1 346 0 278 209 35 9 chrY 8203678 8203793 -16509286 + (TA)n Simple_repeat Simple_repeat 2 119 0 460 141 35 12 chrY 8203877 8204047 -16509032 + (TA)n Simple_repeat Simple_repeat 1 174 0 503 130 51 10 chrY 8204061 8204481 -16508598 + (TA)n Simple_repeat Simple_repeat 1 437 0 23 54 0 0 chrY 8204675 8204712 -16508367 + AT_rich Low_complexity Low_complexity 1 37 0 1418 118 13 22 chrY 8210045 8210274 -16502805 - L1PA16 LINE L1 0 6166 5940 1872 195 37 0 chrY 8210719 8211093 -16501986 - MLT1B LTR MaLR 0 390 3 753 206 275 5 chrY 8212781 8212999 -16500080 - MER101B LTR ERV1 -51 519 243 376 234 0 47 chrY 8213012 8213119 -16499960 - MER101B LTR ERV1 -442 128 27 2440 207 40 8 chrY 8213158 8213661 -16499418 - MER74A LTR ERVL -32 526 8 207 109 18 36 chrY 8213868 8213923 -16499156 + (TTTTC)n Simple_repeat Simple_repeat 2 55 0 * 1393 189 4 31 chrY 8213921 8214201 -16498878 - AluJo SINE Alu 0 301 29 3954 162 44 21 chrY 8214531 8215283 -16497796 - L1MA8 LINE L1 -119 6172 5404 1026 188 64 108 chrY 8215295 8215609 -16497470 + AluJo SINE Alu 3 302 0 1898 134 11 0 chrY 8216831 8217114 -16495965 + AluSx SINE Alu 1 286 -26 1362 169 90 23 chrY 8217137 8217271 -16495808 - AluJo SINE Alu -28 284 160 1140 66 9 23 chrY 8217271 8217620 -16495459 + (TTC)n Simple_repeat Simple_repeat 1 344 0 1362 169 90 23 chrY 8217620 8217750 -16495329 - AluJo SINE Alu -152 160 1 201 167 0 0 chrY 8217860 8217896 -16495183 + A-rich Low_complexity Low_complexity 1 36 0 853 234 28 23 chrY 8218168 8218386 -16494693 + MER20 DNA MER1_type 1 219 0 978 66 24 12 chrY 8218402 8218569 -16494510 + (TCTA)n Simple_repeat Simple_repeat 4 172 0 817 227 0 44 chrY 8218571 8218800 -16494279 + MER20 DNA MER1_type 1 219 0 212 239 22 54 chrY 8218816 8218908 -16494171 + (TCTA)n Simple_repeat Simple_repeat 4 92 0 555 132 0 0 chrY 8218923 8219014 -16494065 + (TCTA)n Simple_repeat Simple_repeat 4 94 0 971 203 37 32 chrY 8219016 8219233 -16493846 + MER20 DNA MER1_type 1 218 -1 465 184 0 53 chrY 8219254 8219444 -16493635 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 1005 209 38 5 chrY 8219481 8219692 -16493387 + MER20 DNA MER1_type 2 219 0 22 0 0 0 chrY 8220342 8220364 -16492715 + AT_rich Low_complexity Low_complexity 1 22 0 2022 151 3 0 chrY 8220365 8220664 -16492415 + AluSx SINE Alu 1 300 -12 1190 216 50 32 chrY 8221067 8221174 -16491905 + AluJo SINE Alu 9 113 -199 343 62 16 31 chrY 8221174 8221238 -16491841 + (CAAA)n Simple_repeat Simple_repeat 4 66 0 1190 216 50 32 chrY 8221238 8221413 -16491666 + AluJo SINE Alu 113 296 -16 278 75 60 0 chrY 8224759 8224826 -16488253 + (TA)n Simple_repeat Simple_repeat 2 72 0 25 31 0 0 chrY 8224894 8224926 -16488153 + AT_rich Low_complexity Low_complexity 1 32 0 37082 48 50 2 chrY 8225461 8231315 -16481764 - L1PA2 LINE L1 0 6155 13 729 185 76 38 chrY 8231993 8232204 -16480875 - MER20 DNA MER1_type 0 219 1 212 138 92 20 chrY 8232251 8232403 -16480676 + (TAGA)n Simple_repeat Simple_repeat 4 166 0 413 188 47 0 chrY 8232415 8232564 -16480515 + (TAGA)n Simple_repeat Simple_repeat 2 157 0 330 191 40 12 chrY 8232637 8232810 -16480269 + (TAGA)n Simple_repeat Simple_repeat 3 180 0 372 22 0 0 chrY 8232818 8232863 -16480216 + (CATA)n Simple_repeat Simple_repeat 2 46 0 792 221 33 9 chrY 8232918 8233131 -16479948 - MER20 DNA MER1_type -1 218 1 546 146 0 0 chrY 8233615 8233697 -16479382 + FRAM/FAM SINE Alu 9 90 -86 470 247 57 31 chrY 8233717 8233911 -16479168 + MLT1D LTR MaLR 48 246 -259 939 226 80 32 chrY 8233998 8234374 -16478705 + MLT1C LTR MaLR 1 394 -73 18140 68 7 1 chrY 8234431 8240441 -16472638 - L1PA4 LINE L1 0 6155 1 236 212 15 30 chrY 8240441 8240507 -16472572 + MLT1C LTR MaLR 403 467 0 1618 186 7 0 chrY 8241009 8241283 -16471796 + AluJo SINE Alu 20 295 -17 926 249 80 42 chrY 8241554 8242004 -16471075 - MLT1C LTR MaLR 0 467 1 249 164 27 12 chrY 8242016 8242146 -16470933 - MLT1D LTR MaLR -146 359 200 724 174 0 15 chrY 8242163 8242295 -16470784 - AluSp/q SINE Alu -9 304 175 306 237 167 26 chrY 8242303 8242459 -16470620 - MLT1D LTR MaLR -327 178 1 403 298 87 19 chrY 8242711 8242872 -16470207 + MIR SINE MIR 88 259 -3 21 0 0 0 chrY 8244224 8244245 -16468834 + AT_rich Low_complexity Low_complexity 1 21 0 33244 78 3 95 chrY 8244245 8249158 -16463921 - L1PA5 LINE L1 -9 6145 785 7325 40 2 1 chrY 8249158 8250458 -16462621 + L1PA3 LINE L1 4855 6155 0 33244 78 3 95 chrY 8250458 8251079 -16462000 - L1PA5 LINE L1 -5369 785 1355 2348 60 3 0 chrY 8251079 8251377 -16461702 - L1PA3 LINE L1 -1 6154 5856 33244 78 3 95 chrY 8251377 8252611 -16460468 - L1PA5 LINE L1 -4798 1356 11 384 169 0 0 chrY 8254788 8254865 -16458214 + (CAT)n Simple_repeat Simple_repeat 3 79 0 24 0 0 0 chrY 8255326 8255350 -16457729 + AT_rich Low_complexity Low_complexity 1 24 0 484 290 20 27 chrY 8255954 8256127 -16456952 - MIR SINE MIR -55 153 32 425 238 26 104 chrY 8256374 8256567 -16456512 - MER5B DNA MER1_type 0 178 1 24 53 0 0 chrY 8256972 8257010 -16456069 + AT_rich Low_complexity Low_complexity 1 38 0 231 229 16 0 chrY 8257766 8257827 -16455252 + MLT1J2 LTR MaLR 64 125 -325 1948 128 13 36 chrY 8258314 8258619 -16454460 - AluSg SINE Alu -12 298 1 24 53 0 0 chrY 8258971 8259009 -16454070 + AT_rich Low_complexity Low_complexity 1 38 0 543 184 22 0 chrY 8259702 8259838 -16453241 + GA-rich Low_complexity Low_complexity 1 139 0 2128 128 7 3 chrY 8259970 8260274 -16452805 - AluSx SINE Alu -5 307 3 398 253 0 63 chrY 8260792 8260950 -16452129 - L1ME LINE L1 -474 5647 5500 275 211 0 13 chrY 8261014 8261090 -16451989 + CT-rich Low_complexity Low_complexity 2 76 0 283 265 15 0 chrY 8261138 8261206 -16451873 - MER5B DNA MER1_type -109 69 1 253 217 24 0 chrY 8261453 8261536 -16451543 + CT-rich Low_complexity Low_complexity 2 86 0 1262 145 60 0 chrY 8261626 8261874 -16451205 - L1MA5A LINE L1 -6 6291 6029 2066 89 0 0 chrY 8262068 8262348 -16450731 + L1PA5 LINE L1 5875 6154 0 21 36 0 0 chrY 8262449 8262477 -16450602 + AT_rich Low_complexity Low_complexity 1 28 0 1247 233 39 21 chrY 8262485 8262768 -16450311 + AluJo SINE Alu 1 288 -24 246 107 54 0 chrY 8262768 8262824 -16450255 + (TA)n Simple_repeat Simple_repeat 1 59 0 1033 146 50 5 chrY 8262919 8263225 -16449854 - THE1C LTR MaLR 0 375 7 2557 21 0 0 chrY 8263874 8264192 -16448887 + AluY SINE Alu 1 318 0 225 213 0 0 chrY 8264443 8264490 -16448589 - MER63 DNA MER1_type -333 728 682 1300 114 0 0 chrY 8265181 8265382 -16447697 - L1PA14 LINE L1 -358 5803 5603 2371 86 3 65 chrY 8265382 8265765 -16447314 + L1PA14 LINE L1 5800 6159 -2 1503 229 7 0 chrY 8266573 8266883 -16446196 - AluJo SINE Alu 0 312 1 624 114 13 82 chrY 8268882 8268908 -16444171 + L1PA15 LINE L1 5306 5332 -834 1814 173 7 3 chrY 8268908 8269208 -16443871 + AluSx SINE Alu 1 301 -11 624 114 13 82 chrY 8269208 8269339 -16443740 + L1PA15 LINE L1 5332 5452 -714 * 18104 69 3 1 chrY 8269336 8271874 -16441205 - L1PA4 LINE L1 -1873 4273 1730 8127 55 4 3 chrY 8271867 8273714 -16439365 + L1PA4 LINE L1 4292 6142 -13 * 3745 163 24 9 chrY 8273760 8274458 -16438621 + L1PA15 LINE L1 5442 6150 -15 195 100 0 0 chrY 8274468 8274498 -16438581 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 22 0 0 0 chrY 8274735 8274757 -16438322 + AT_rich Low_complexity Low_complexity 1 22 0 316 151 0 0 chrY 8274825 8274878 -16438201 - L1MC/D LINE L1 -490 5843 5791 533 222 17 0 chrY 8274886 8275003 -16438076 + L1MC1 LINE L1 6215 6333 0 21 71 0 0 chrY 8275019 8275061 -16438018 + AT_rich Low_complexity Low_complexity 1 42 0 348 24 0 0 chrY 8275621 8275662 -16437417 + (TG)n Simple_repeat Simple_repeat 2 42 0 1869 123 58 0 chrY 8275672 8275949 -16437130 - AluSq SINE Alu -20 293 1 38659 71 2 1 chrY 8276241 8282367 -16430712 + L1PA3 LINE L1 13 6149 -6 11277 56 3 0 chrY 8282383 8284570 -16428509 + L1PA4 LINE L1 3950 6139 -16 649 192 13 32 chrY 8284950 8285106 -16427973 - LTR22B LTR ERVK 0 492 340 * 1070 135 49 0 chrY 8285091 8285276 -16427803 - LTR22B LTR ERVK -294 198 5 3239 174 31 3 chrY 8285613 8286200 -16426879 + LTR26 LTR ERV1 1 603 0 835 216 44 0 chrY 8286346 8286527 -16426552 + MER5A DNA MER1_type 1 189 0 1292 205 3 68 chrY 8286828 8287150 -16425929 + AluJo SINE Alu 1 301 -11 1147 213 4 4 chrY 8287271 8287496 -16425583 + LTR26 LTR ERV1 379 603 0 445 256 99 50 chrY 8287837 8288201 -16424878 - MER20B DNA MER1_type -110 673 292 702 187 27 7 chrY 8288201 8288351 -16424728 + L1MA4 LINE L1 5846 5998 -302 21 0 0 0 chrY 8288665 8288686 -16424393 + AT_rich Low_complexity Low_complexity 1 21 0 786 209 31 7 chrY 8288816 8289090 -16423989 - L1MA7 LINE L1 -1 6290 5893 1027 234 31 73 chrY 8289270 8289575 -16423504 - MLT1A1 LTR MaLR 0 365 78 1589 180 18 85 chrY 8289575 8289964 -16423115 - MLT1A1 LTR MaLR 0 365 3 1027 234 31 73 chrY 8289964 8290039 -16423040 - MLT1A1 LTR MaLR -287 78 1 2048 117 0 78 chrY 8290676 8290891 -16422188 + L1PB4 LINE L1 5607 5776 -380 2022 141 42 36 chrY 8290891 8291252 -16421827 - THE1B LTR MaLR 0 364 2 2048 117 0 78 chrY 8291252 8291446 -16421633 + L1PB4 LINE L1 5776 5984 -172 2607 127 24 12 chrY 8291562 8291987 -16421092 + L1PB2 LINE L1 5720 6149 -2 478 139 0 0 chrY 8292080 8292166 -16420913 - L1PB1 LINE L1 -3 6148 6063 2221 107 8 46 chrY 8292166 8292299 -16420780 + L1PB1 LINE L1 5696 5833 -318 2016 143 3 0 chrY 8292299 8292600 -16420479 + AluSc SINE Alu 1 302 -7 2221 107 8 46 chrY 8292600 8292857 -16420222 + L1PB1 LINE L1 5833 6071 -80 509 229 28 16 chrY 8292883 8293040 -16420039 + L1MB3 LINE L1 6019 6184 0 228 316 168 19 chrY 8293514 8293669 -16419410 - MIR SINE MIR -56 206 29 28615 120 30 19 chrY 8293907 8298802 -16414277 + L1PA6 LINE L1 11 4959 -1187 6492 81 10 0 chrY 8298802 8299766 -16413313 + L1PA6 LINE L1 5174 6146 -8 1436 214 42 6 chrY 8299928 8300264 -16412815 - MLT1A1 LTR MaLR -15 350 3 1760 178 20 3 chrY 8300288 8300591 -16412488 + AluSx SINE Alu 1 308 -4 2051 139 0 3 chrY 8300591 8300884 -16412195 + AluSc SINE Alu 1 293 -16 2401 253 18 8 chrY 8301532 8302138 -16410941 - MER82 DNA MER2_type 0 653 42 1521 122 5 0 chrY 8302138 8302360 -16410719 - AluSc SINE Alu -7 302 80 805 230 129 94 chrY 8302841 8302894 -16410185 - MLT1D LTR MaLR 0 505 455 2402 140 37 0 chrY 8302894 8302948 -16410131 + L1PB1 LINE L1 5731 5782 -369 318 50 0 0 chrY 8302948 8302988 -16410091 + (CA)n Simple_repeat Simple_repeat 2 41 0 2402 140 37 0 chrY 8302988 8303339 -16409740 + L1PB1 LINE L1 5782 6151 0 805 230 129 94 chrY 8303339 8303720 -16409359 - MLT1D LTR MaLR -50 455 56 1281 204 43 43 chrY 8303720 8304072 -16409007 - MLT1A2 LTR MaLR 0 374 23 1928 158 31 19 chrY 8304077 8304437 -16408642 - THE1B LTR MaLR 0 364 1 198 367 31 41 chrY 8305191 8305289 -16407790 - L2 LINE L2 0 3313 3217 1134 240 62 35 chrY 8306130 8306564 -16406515 + MLT1C LTR MaLR 22 467 0 6373 88 6 0 chrY 8307262 8308333 -16404746 - L1PA7 LINE L1 -16 6138 5063 1589 185 104 32 chrY 8308920 8309436 -16403643 + MLT2A2 LTR ERVL 1 554 0 250 317 161 19 chrY 8309793 8309998 -16403081 - L2 LINE L2 0 3313 3080 1834 132 68 11 chrY 8310346 8310627 -16402452 - AluSx SINE Alu -13 299 3 618 229 6 34 chrY 8310765 8310842 -16402237 - L1MB7 LINE L1 -300 5884 5806 2201 126 73 59 chrY 8310842 8311077 -16402002 + MSTA LTR MaLR 1 246 -182 2211 94 3 0 chrY 8311077 8311374 -16401705 + AluY SINE Alu 1 298 -13 2201 126 73 59 chrY 8311374 8311560 -16401519 + MSTA LTR MaLR 246 428 0 618 229 6 34 chrY 8311560 8311661 -16401418 - L1MB7 LINE L1 -378 5806 5711 401 185 120 0 chrY 8311672 8311780 -16401299 + L1MB4 LINE L1 6035 6155 -25 2189 93 19 26 chrY 8311838 8312150 -16400929 + AluY SINE Alu 1 310 -1 1743 187 3 10 chrY 8312190 8312495 -16400584 + AluSx SINE Alu 1 303 -9 290 260 7 0 chrY 8312624 8312778 -16400301 + CT-rich Low_complexity Low_complexity 2 156 0 444 243 0 0 chrY 8312830 8312978 -16400101 + CT-rich Low_complexity Low_complexity 2 149 0 21 36 0 0 chrY 8313269 8313297 -16399782 + AT_rich Low_complexity Low_complexity 1 28 0 266 264 12 12 chrY 8314176 8314339 -16398740 + (CATATA)n Simple_repeat Simple_repeat 2 164 0 502 268 12 27 chrY 8314340 8314686 -16398393 + (TA)n Simple_repeat Simple_repeat 1 340 0 330 220 0 80 chrY 8314702 8314802 -16398277 + L1MC4 LINE L1 6612 6703 -1339 310 216 18 36 chrY 8314846 8315013 -16398066 + (CATATA)n Simple_repeat Simple_repeat 5 168 0 333 282 17 17 chrY 8315014 8315131 -16397948 + (CA)n Simple_repeat Simple_repeat 2 118 0 544 259 93 5 chrY 8316681 8316874 -16396205 - MER20 DNA MER1_type -9 210 1 540 0 0 0 chrY 8316885 8316945 -16396134 + (TAGA)n Simple_repeat Simple_repeat 1 60 0 1865 166 33 28 chrY 8316945 8317306 -16395773 + THE1B LTR MaLR 2 364 0 293 191 33 26 chrY 8317307 8317459 -16395620 + (TAGA)n Simple_repeat Simple_repeat 4 156 0 742 196 50 17 chrY 8317507 8317686 -16395393 - MER20 DNA MER1_type -17 202 18 1877 179 0 6 chrY 8317870 8318183 -16394896 + AluSx SINE Alu 1 311 -1 365 188 12 0 chrY 8319116 8319201 -16393878 + (CATA)n Simple_repeat Simple_repeat 4 89 0 303 276 46 0 chrY 8319144 8319231 -16393848 - L1MC4 LINE L1 -1338 6704 6614 * 2260 94 0 16 chrY 8319287 8319596 -16393483 + AluY SINE Alu 1 304 -7 7628 92 41 23 chrY 8319651 8321497 -16391582 + L1PA6 LINE L1 4299 6153 -1 1078 182 84 16 chrY 8323112 8323394 -16389685 + LTR47A LTR ERVL 2 364 -88 192 40 0 0 chrY 8323394 8323419 -16389660 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1078 182 84 16 chrY 8323419 8323512 -16389567 + LTR47A LTR ERVL 364 449 -3 298 269 14 14 chrY 8324543 8324839 -16388240 + CT-rich Low_complexity Low_complexity 1 296 0 268 241 30 8 chrY 8324854 8324987 -16388092 + CT-rich Low_complexity Low_complexity 2 137 0 464 250 14 7 chrY 8325030 8325313 -16387766 + CT-rich Low_complexity Low_complexity 1 284 0 1634 214 91 8 chrY 8325916 8326299 -16386780 - MLT1D LTR MaLR -90 415 1 291 188 42 0 chrY 8326300 8326348 -16386731 - MLT1D LTR MaLR -455 50 1 289 188 42 0 chrY 8326349 8326397 -16386682 - MLT1D LTR MaLR -455 50 1 299 133 44 0 chrY 8326401 8326446 -16386633 - MLT1D LTR MaLR -458 47 1 254 188 42 0 chrY 8326447 8326495 -16386584 - MLT1D LTR MaLR -455 50 1 225 154 39 77 chrY 8326542 8326594 -16386485 - MLT1D LTR MaLR -455 50 1 303 196 0 0 chrY 8326594 8326645 -16386434 - MLT1D LTR MaLR -454 51 1 3089 190 38 3 chrY 8326942 8327526 -16385553 - L1PB4 LINE L1 -17 6139 5536 1360 240 59 84 chrY 8328031 8328339 -16384740 + MER77 LTR ERV1 41 355 -325 2199 170 78 5 chrY 8328339 8328738 -16384341 + MSTA LTR MaLR 1 428 0 1360 240 59 84 chrY 8328738 8329027 -16384052 + MER77 LTR ERV1 355 673 -7 1726 172 0 38 chrY 8329162 8329476 -16383603 + AluJo SINE Alu 11 312 0 667 181 17 14 chrY 8329476 8329830 -16383249 + GA-rich Low_complexity Low_complexity 1 355 0 1091 68 17 23 chrY 8329843 8330019 -16383060 + (GAAA)n Simple_repeat Simple_repeat 4 178 0 1601 207 11 28 chrY 8330387 8330750 -16382329 + L1MB8 LINE L1 5782 6138 -40 1451 198 38 0 chrY 8330750 8331013 -16382066 + AluJo SINE Alu 1 273 -39 1775 53 0 0 chrY 8331013 8331221 -16381858 + L1PA4 LINE L1 5947 6154 -1 26 0 0 0 chrY 8331221 8331247 -16381832 + AT_rich Low_complexity Low_complexity 1 26 0 317 123 0 35 chrY 8331251 8331308 -16381771 + L1MB8 LINE L1 6124 6178 0 207 382 42 14 chrY 8332044 8332188 -16380891 - MIR3 SINE MIR -36 172 25 721 238 12 0 chrY 8332287 8332451 -16380628 - L1PB4 LINE L1 -5 6151 5986 1590 168 49 0 chrY 8332578 8332864 -16380215 - MLT1A1 LTR MaLR -2 363 64 1722 190 20 72 chrY 8332911 8333316 -16379763 - MLT1B LTR MaLR -4 386 3 638 181 87 0 chrY 8333628 8333766 -16379313 + MLT2D LTR ERVL 144 293 -121 1778 250 86 26 chrY 8333824 8334405 -16378674 + MLT1E3 LTR MaLR 1 616 -8 4003 102 56 0 chrY 8334415 8334973 -16378106 + L1PA10 LINE L1 5576 6164 -4 733 230 0 0 chrY 8335266 8335392 -16377687 - FLAM_C SINE Alu -7 126 1 201 121 0 0 chrY 8335469 8335502 -16377577 + (TTA)n Simple_repeat Simple_repeat 2 34 0 2100 128 0 10 chrY 8335573 8335877 -16377202 + AluY SINE Alu 1 301 -10 207 0 0 0 chrY 8335879 8335902 -16377177 + (GGAGAA)n Simple_repeat Simple_repeat 3 25 0 1629 175 0 36 chrY 8336046 8336355 -16376724 + AluJo SINE Alu 1 298 -14 944 202 77 37 chrY 8336696 8336984 -16376095 - MSTD LTR MaLR -1 395 49 1906 161 7 0 chrY 8336984 8337282 -16375797 - AluSx SINE Alu -12 300 1 944 202 77 37 chrY 8337282 8337333 -16375746 - MSTD LTR MaLR -347 49 1 974 239 12 36 chrY 8337517 8337768 -16375311 + AluJo SINE Alu 14 258 -54 1188 274 17 59 chrY 8338639 8338750 -16374329 + MER44D DNA MER2_type 1 115 -2472 239 0 32 0 chrY 8338750 8338781 -16374298 + (TTTA)n Simple_repeat Simple_repeat 3 34 0 1979 154 0 0 chrY 8338783 8339063 -16374016 - AluSx SINE Alu -32 280 1 1188 274 17 59 chrY 8339063 8339306 -16373773 + MER44D DNA MER2_type 116 343 -362 1565 177 41 38 chrY 8339590 8339934 -16373145 + Tigger7 DNA MER2_type 2139 2483 -4 2191 121 0 0 chrY 8340087 8340385 -16372694 + AluY SINE Alu 1 298 -13 1757 174 10 3 chrY 8340408 8340706 -16372373 - AluSx SINE Alu -12 300 1 1014 139 35 60 chrY 8341233 8341434 -16371645 + MLT2A2 LTR ERVL 258 453 0 3263 119 80 25 chrY 8342358 8342919 -16370160 + MER4B LTR ERV1 10 601 -9 3947 155 19 13 chrY 8343478 8343601 -16369478 - MER41B LTR ERV1 0 635 514 1848 152 41 0 chrY 8343601 8343891 -16369188 + AluSx SINE Alu 1 302 -10 3947 155 19 13 chrY 8343891 8344398 -16368681 - MER41B LTR ERV1 -121 514 1 366 284 0 0 chrY 8344453 8344534 -16368545 + Tigger4(Zombi) DNA MER2_type 1 81 -2650 1592 205 0 13 chrY 8344592 8344894 -16368185 - AluJo SINE Alu -14 298 1 431 97 0 14 chrY 8344895 8344967 -16368112 + Tigger4(Zombi) DNA MER2_type 2480 2550 -181 1416 206 25 4 chrY 8344967 8345248 -16367831 + AluJo SINE Alu 1 287 -25 894 189 11 6 chrY 8345293 8345473 -16367606 + Tigger4(Zombi) DNA MER2_type 2545 2725 -6 1574 182 0 44 chrY 8345879 8346198 -16366881 + AluJb SINE Alu 1 306 0 186 103 0 0 chrY 8346373 8346402 -16366677 + (TAA)n Simple_repeat Simple_repeat 2 30 0 2278 135 82 15 chrY 8346731 8347072 -16366007 - THE1B LTR MaLR 0 364 1 2773 42 0 0 chrY 8347982 8348295 -16364784 + L1PA3 LINE L1 5840 6152 -3 481 149 22 39 chrY 8348434 8348671 -16364408 + CT-rich Low_complexity Low_complexity 1 233 0 500 213 17 33 chrY 8348725 8349525 -16363554 + CT-rich Low_complexity Low_complexity 1 786 0 212 200 18 0 chrY 8349518 8349573 -16363506 + C-rich Low_complexity Low_complexity 3 58 0 * 226 223 32 11 chrY 8349573 8349667 -16363412 + T-rich Low_complexity Low_complexity 4 99 0 363 177 9 35 chrY 8349681 8349794 -16363285 + CT-rich Low_complexity Low_complexity 4 113 0 331 258 13 7 chrY 8349815 8349970 -16363109 + CT-rich Low_complexity Low_complexity 1 156 0 1250 234 42 60 chrY 8350327 8350711 -16362368 + MLT1B LTR MaLR 1 377 -13 1156 209 7 9 chrY 8350707 8350941 -16362138 + MLT1B LTR MaLR 159 396 0 * 1130 154 9 69 chrY 8350942 8351175 -16361904 + MLT1B LTR MaLR 159 377 -13 455 102 8 211 chrY 8351817 8351890 -16361189 - Tigger5 DNA MER2_type 0 2323 2285 1557 204 13 3 chrY 8351890 8352198 -16360881 + AluJo SINE Alu 1 311 -1 455 102 8 211 chrY 8352198 8352252 -16360827 - Tigger5 DNA MER2_type -38 2285 2222 264 313 56 25 chrY 8352251 8352411 -16360668 - LTR16C LTR ERVL -29 462 298 * 1178 215 71 62 chrY 8352657 8353042 -16360037 + MLT1B LTR MaLR 4 396 0 369 351 5 39 chrY 8353134 8353339 -16359740 - LTR16C LTR ERVL -233 258 61 454 225 153 80 chrY 8353388 8353753 -16359326 + L1ME3A LINE L1 4883 5274 -872 586 281 47 71 chrY 8353841 8354023 -16359056 + L1ME3A LINE L1 5385 5570 -596 1920 126 10 40 chrY 8354023 8354325 -16358754 - AluSx SINE Alu -19 293 1 586 281 47 71 chrY 8354325 8354679 -16358400 + L1ME3A LINE L1 5570 5919 -247 844 101 0 17 chrY 8354710 8354851 -16358228 - L1PA10 LINE L1 0 6168 6035 1893 169 54 17 chrY 8354851 8355205 -16357874 - L1PB4 LINE L1 -8 6148 5782 182 171 24 0 chrY 8355205 8355246 -16357833 + (TATATG)n Simple_repeat Simple_repeat 5 46 0 264 283 33 0 chrY 8355247 8355339 -16357740 + L1MC4 LINE L1 6614 6708 -1334 * 1092 154 53 8 chrY 8355316 8355521 -16357558 - L1M4 LINE L1 -364 5792 5579 1648 179 7 40 chrY 8355870 8356030 -16357049 + AluJo SINE Alu 2 149 -163 2758 122 47 0 chrY 8356030 8356439 -16356640 - MSTA LTR MaLR 0 428 1 1648 179 7 40 chrY 8356439 8356579 -16356500 + AluJo SINE Alu 149 292 -20 1479 207 29 4 chrY 8357286 8357566 -16355513 + AluJo SINE Alu 1 287 -25 225 305 0 0 chrY 8358061 8358120 -16354959 - LTR16A LTR ERVL -7 443 385 260 193 61 26 chrY 8358389 8358503 -16354576 + (TAGA)n Simple_repeat Simple_repeat 4 121 0 618 14 0 0 chrY 8358508 8358579 -16354500 + (ATATG)n Simple_repeat Simple_repeat 5 75 0 382 49 33 0 chrY 8358579 8358640 -16354439 + (TGGA)n Simple_repeat Simple_repeat 2 64 0 533 105 35 35 chrY 8358659 8358830 -16354249 + (TAGA)n Simple_repeat Simple_repeat 4 174 0 427 119 36 42 chrY 8358855 8359023 -16354056 + (TAGA)n Simple_repeat Simple_repeat 4 170 0 209 111 44 0 chrY 8359058 8359103 -16353976 + (TAGA)n Simple_repeat Simple_repeat 3 49 0 279 0 0 0 chrY 8359862 8359893 -16353186 + (TG)n Simple_repeat Simple_repeat 2 32 0 1111 188 34 21 chrY 8360003 8360237 -16352842 - AluJo SINE Alu -29 283 47 1450 211 50 0 chrY 8360292 8360591 -16352488 - MER2 DNA MER2_type -31 314 1 1453 181 3 64 chrY 8361043 8361357 -16351722 + AluJo SINE Alu 12 306 -6 567 135 0 0 chrY 8361357 8361453 -16351626 + (GGAA)n Simple_repeat Simple_repeat 1 96 0 1446 193 65 0 chrY 8362635 8362910 -16350169 + AluJb SINE Alu 1 293 -19 7088 55 1 0 chrY 8362945 8363775 -16349304 + L1PA4 LINE L1 5323 6153 -2 26 0 0 0 chrY 8363775 8363801 -16349278 + AT_rich Low_complexity Low_complexity 1 26 0 214 114 0 0 chrY 8365006 8365041 -16348038 - L2 LINE L2 -3 3269 3235 2191 179 25 6 chrY 8365272 8365629 -16347450 - THE1B LTR MaLR 0 364 1 618 241 97 0 chrY 8365659 8365804 -16347275 + AluSg/x SINE Alu 138 296 -16 2738 115 13 68 chrY 8366029 8366569 -16346510 + L1PA6 LINE L1 3840 4349 -1797 6620 74 12 2 chrY 8366569 8368085 -16344994 + L1PA6 LINE L1 4636 6154 0 464 236 9 0 chrY 8368252 8368358 -16344721 - Tigger2 DNA MER2_type -11 2707 2601 375 204 48 12 chrY 8368442 8368609 -16344470 + (TA)n Simple_repeat Simple_repeat 2 174 0 41 66 0 0 chrY 8368614 8368690 -16344389 + AT_rich Low_complexity Low_complexity 1 76 0 1465 164 70 32 chrY 8368775 8369088 -16343991 - Tigger2 DNA MER2_type -109 2609 1 2575 50 0 0 chrY 8369116 8369415 -16343664 + AluY SINE Alu 1 299 -12 254 261 46 0 chrY 8369503 8369633 -16343446 + (TA)n Simple_repeat Simple_repeat 1 136 0 1861 156 0 0 chrY 8369771 8370046 -16343033 - AluSx SINE Alu -19 293 19 536 253 39 39 chrY 8370070 8370248 -16342831 - MER20 DNA MER1_type -33 186 9 579 163 0 113 chrY 8370539 8370553 -16342526 + LTR62 LTR ERVK 1 15 -704 2076 173 14 6 chrY 8370553 8370912 -16342167 - THE1B LTR MaLR -2 362 1 579 163 0 113 chrY 8370912 8371057 -16342022 + LTR62 LTR ERVK 15 142 -577 230 186 0 0 chrY 8371057 8371100 -16341979 + LTR30 LTR ERV1 1 43 -679 704 213 25 31 chrY 8371100 8371374 -16341705 + LTR12 LTR ERV1 62 234 -480 2463 58 0 0 chrY 8371413 8371723 -16341356 + L1PA3 LINE L1 5843 6152 -3 288 279 0 0 chrY 8371748 8371816 -16341263 + MER106B DNA MER1_type 1 68 -991 39635 52 2 2 chrY 8371830 8377826 -16335253 + L1PA3 LINE L1 127 6127 -28 216 67 0 0 chrY 8377831 8377861 -16335218 + (TAAAA)n Simple_repeat Simple_repeat 1 30 0 865 220 0 0 chrY 8377889 8378062 -16335017 + L1PA15 LINE L1 5993 6165 0 982 139 6 12 chrY 8378535 8378708 -16334371 - L1PA13 LINE L1 0 6163 5992 1731 80 0 0 chrY 8379444 8379714 -16333365 + L1PA7 LINE L1 5912 6181 0 1954 166 3 0 chrY 8379792 8380093 -16332986 - AluSx SINE Alu -10 302 1 237 33 0 0 chrY 8381008 8381038 -16332041 + (TG)n Simple_repeat Simple_repeat 2 31 0 207 139 0 0 chrY 8381367 8381403 -16331676 + (TC)n Simple_repeat Simple_repeat 1 36 0 180 273 26 78 chrY 8381434 8381511 -16331568 - L3 LINE CR1 0 1577 1505 691 282 98 25 chrY 8381570 8381967 -16331112 - MER77 LTR ERV1 -7 598 173 379 250 92 0 chrY 8382015 8382135 -16330944 - MER77 LTR ERV1 -406 199 69 236 257 29 0 chrY 8382325 8382395 -16330684 + MER96B DNA MER1_type? 345 416 -1 311 111 0 19 chrY 8382427 8382481 -16330598 + (TA)n Simple_repeat Simple_repeat 2 54 0 208 184 54 0 chrY 8382528 8382675 -16330404 + (TA)n Simple_repeat Simple_repeat 1 155 0 209 33 33 0 chrY 8382756 8382786 -16330293 + (TA)n Simple_repeat Simple_repeat 1 31 0 267 247 12 12 chrY 8382810 8382891 -16330188 - Tigger5 DNA MER2_type 0 2323 2243 792 173 0 23 chrY 8382988 8383121 -16329958 + FLAM_C SINE Alu 1 130 -3 1432 228 10 3 chrY 8383135 8383429 -16329650 + AluJo SINE Alu 1 296 -16 255 152 0 0 chrY 8383464 8383510 -16329569 + (CATA)n Simple_repeat Simple_repeat 3 48 0 1777 166 85 39 chrY 8383547 8383982 -16329097 - LTR2B LTR ERV1 0 490 36 9269 86 5 1 chrY 8384005 8385318 -16327761 - Harlequin LTR ERV1 0 6896 5578 1098 96 0 0 chrY 8385320 8385456 -16327623 + AluY SINE Alu 1 136 -175 10556 76 16 3 chrY 8385460 8386899 -16326180 - Harlequin LTR ERV1 -1943 4953 3496 20035 91 57 39 chrY 8386899 8390217 -16322862 - Harlequin LTR ERV1 -3517 3379 1 1295 234 75 35 chrY 8390221 8390645 -16322434 - LTR2B LTR ERV1 -16 474 34 421 290 6 19 chrY 8390720 8390839 -16322240 - MER96B DNA MER1_type? -5 412 294 1979 155 7 0 chrY 8390839 8391136 -16321943 + AluSx SINE Alu 1 299 -13 421 290 6 19 chrY 8391136 8391178 -16321901 - MER96B DNA MER1_type? -123 294 253 1985 142 36 0 chrY 8391445 8391747 -16321332 - AluSp SINE Alu 0 313 1 1571 214 72 2 chrY 8391853 8392268 -16320811 + L1MC3 LINE L1 7325 7768 -17 1391 197 7 36 chrY 8392275 8392579 -16320500 + AluJb SINE Alu 2 296 -16 576 207 95 18 chrY 8393042 8393211 -16319868 - MER34C LTR ERV1 -3 582 401 * 2100 155 61 26 chrY 8393203 8393630 -16319449 - MER4B LTR ERV1 -160 450 9 341 239 26 52 chrY 8393838 8393989 -16319090 - L1MB7 LINE L1 -10 6174 6025 1435 142 77 0 chrY 8394037 8394297 -16318782 + MER4E LTR ERV1 1 280 -499 4287 124 18 137 chrY 8394298 8395773 -16317306 - pTR5 LTR ERV1 0 2606 1524 2753 147 26 30 chrY 8395773 8396278 -16316801 + MER4E LTR ERV1 277 779 0 507 229 39 56 chrY 8396303 8396482 -16316597 + LTR8A LTR ERV1 298 473 -254 543 213 67 0 chrY 8396498 8396662 -16316417 - L1MB7 LINE L1 -190 5988 5814 1430 175 38 16 chrY 8396679 8396994 -16316085 - L1MC1 LINE L1 0 6333 6012 3410 113 49 6 chrY 8396994 8397525 -16315554 + MER41A LTR ERV1 1 554 0 1948 156 39 28 chrY 8398529 8398889 -16314190 - THE1B LTR MaLR 0 364 1 419 222 26 0 chrY 8399155 8399308 -16313771 + (TA)n Simple_repeat Simple_repeat 2 158 0 652 226 5 38 chrY 8399320 8399335 -16313744 - MLT1C LTR MaLR -112 355 341 1790 158 32 45 chrY 8399335 8399715 -16313364 - THE1C LTR MaLR 0 375 1 652 226 5 38 chrY 8399715 8399885 -16313194 - MLT1C LTR MaLR -126 341 176 855 119 0 0 chrY 8399905 8400023 -16313056 - AluSq/x SINE Alu -194 118 1 636 173 73 45 chrY 8400023 8400202 -16312877 - MLT1C LTR MaLR -281 186 3 1943 137 37 7 chrY 8400574 8400874 -16312205 - AluSx SINE Alu -3 309 1 1543 199 3 34 chrY 8400979 8401301 -16311778 - AluJb SINE Alu 0 312 1 1773 192 0 0 chrY 8401618 8401915 -16311164 + AluJo SINE Alu 1 297 -15 1846 175 3 0 chrY 8402214 8402505 -16310574 + AluSx SINE Alu 1 292 -20 1029 213 136 37 chrY 8402926 8403199 -16309880 - AluJb SINE Alu -1 311 12 16648 56 3 3 chrY 8405162 8408083 -16304996 - L1PA5 LINE L1 -6 6148 3228 6636 74 34 0 chrY 8408086 8409046 -16304033 + L1PA5 LINE L1 2224 3216 -2930 240 35 0 0 chrY 8409554 8409583 -16303496 + (TC)n Simple_repeat Simple_repeat 2 30 0 2195 106 3 7 chrY 8409653 8409955 -16303124 + AluSg SINE Alu 1 301 -9 854 44 0 0 chrY 8410091 8410204 -16302875 - L1PA3 LINE L1 -186 5969 5857 1530 43 0 0 chrY 8410204 8410388 -16302691 + L1PA3 LINE L1 5968 6153 -2 237 182 18 0 chrY 8410411 8410466 -16302613 + A-rich Low_complexity Low_complexity 4 59 0 241 345 82 9 chrY 8410660 8410770 -16302309 - MIR3 SINE MIR -8 200 83 1615 194 0 35 chrY 8410880 8411190 -16301889 + AluJo SINE Alu 1 299 -13 1741 207 0 0 chrY 8411300 8411600 -16301479 - AluSx SINE Alu -12 300 1 205 267 0 0 chrY 8411683 8411728 -16301351 + (TG)n Simple_repeat Simple_repeat 1 45 0 28 29 0 0 chrY 8412292 8412327 -16300752 + AT_rich Low_complexity Low_complexity 1 35 0 1363 206 0 34 chrY 8412339 8412606 -16300473 - AluJo SINE Alu -54 258 1 657 227 8 0 chrY 8412752 8412884 -16300195 + FLAM_C SINE Alu 1 133 0 1438 170 42 8 chrY 8412908 8413167 -16299912 + AluJb SINE Alu 23 290 -22 305 146 37 12 chrY 8413167 8413249 -16299830 + (TA)n Simple_repeat Simple_repeat 1 84 0 2110 134 0 0 chrY 8413339 8413630 -16299449 - AluSx SINE Alu -16 296 6 1870 161 3 3 chrY 8413777 8414057 -16299022 + AluSx SINE Alu 3 283 -25 180 0 0 0 chrY 8414057 8414077 -16299002 + (CA)n Simple_repeat Simple_repeat 1 20 0 2123 109 7 3 chrY 8414085 8414379 -16298700 + AluSx SINE Alu 7 301 -11 4372 128 44 0 chrY 8414557 8415219 -16297860 - LTR8 LTR ERV1 0 691 1 2049 167 92 0 chrY 8415734 8416124 -16296955 + MSTA LTR MaLR 1 426 -2 2275 104 0 7 chrY 8416176 8416484 -16296595 - AluY SINE Alu -3 308 3 2024 154 3 0 chrY 8416543 8416849 -16296230 + AluSx SINE Alu 1 307 -5 415 174 10 31 chrY 8416932 8417030 -16296049 + L1MC2 LINE L1 6073 6168 -176 1280 177 2 40 chrY 8417030 8417539 -16295540 + MER4A LTR ERV1 1 558 -106 41379 70 3 4 chrY 8417672 8423821 -16289258 + L1PA4 LINE L1 2 6142 -13 257 274 42 0 chrY 8423825 8423920 -16289159 + LTR30 LTR ERV1 516 614 -108 804 165 24 0 chrY 8423922 8424049 -16289030 + LTR12 LTR ERV1 351 480 -234 438 103 0 0 chrY 8424052 8424110 -16288969 + Alu SINE Alu 238 295 -15 2793 139 14 91 chrY 8424110 8424201 -16288878 + MER4B LTR ERV1 19 115 -664 2009 156 0 3 chrY 8424201 8424508 -16288571 + AluSq SINE Alu 1 306 -7 2793 139 14 91 chrY 8424508 8424978 -16288101 + MER4B LTR ERV1 115 689 -90 3604 156 34 11 chrY 8424978 8425599 -16287480 + MER41B LTR ERV1 1 635 0 2793 139 14 91 chrY 8425599 8425684 -16287395 + MER4B LTR ERV1 689 779 0 396 145 26 0 chrY 8425685 8425761 -16287318 + L1MC2 LINE L1 6255 6332 -12 257 160 0 40 chrY 8426226 8426276 -16286803 + LTR30 LTR ERV1 1 48 -674 1301 165 157 30 chrY 8426276 8426735 -16286344 + pTR5 LTR ERV1 57 480 -234 1662 209 62 81 chrY 8427464 8427980 -16285099 + LTR64 LTR ERVK 43 548 -10 1733 147 4 0 chrY 8428034 8428299 -16284780 - AluY SINE Alu -45 266 1 745 201 0 8 chrY 8428300 8428434 -16284645 - AluJb SINE Alu -178 134 2 193 109 43 0 chrY 8428451 8428497 -16284582 + (TAGA)n Simple_repeat Simple_repeat 1 48 0 2294 198 27 5 chrY 8428733 8429182 -16283897 + MLT2C2 LTR ERVL 1 459 -5 1910 95 89 131 chrY 8429586 8429997 -16283082 - LTR14B LTR ERVK -5 603 1 2855 105 66 0 chrY 8430194 8430603 -16282476 - MLT2A1 LTR ERVL -8 436 1 1821 125 88 4 chrY 8431550 8431822 -16281257 - AluSc SINE Alu -14 295 1 1295 229 35 7 chrY 8432328 8432616 -16280463 - AluJb SINE Alu -16 296 1 443 282 14 57 chrY 8433362 8433571 -16279508 + LTR4 LTR ERV1 1 200 -396 554 268 65 51 chrY 8433757 8434033 -16279046 + LTR4 LTR ERV1 317 596 0 581 256 17 28 chrY 8435263 8435443 -16277636 - MER39 LTR ERV1 0 707 530 743 224 0 0 chrY 8435446 8435593 -16277486 - AluJb SINE Alu -31 281 135 309 151 0 0 chrY 8435593 8435646 -16277433 + (TA)n Simple_repeat Simple_repeat 2 54 0 337 204 23 0 chrY 8435646 8435734 -16277345 + L1MC4 LINE L1 6614 6703 -1339 700 194 0 8 chrY 8435761 8435890 -16277189 - AluSq/x SINE Alu -184 129 2 541 198 27 94 chrY 8435918 8436160 -16276919 - MER39 LTR ERV1 -206 501 150 232 239 0 0 chrY 8436373 8436419 -16276660 - MER39 LTR ERV1 -661 46 1 661 215 0 0 chrY 8436777 8436907 -16276172 - FRAM SINE Alu -2 174 45 1069 207 10 5 chrY 8437131 8437329 -16275750 + MER58A DNA MER1_type 26 224 0 1675 227 57 4 chrY 8437589 8438025 -16275054 + MER89 LTR ERV1 1 559 0 1637 204 43 6 chrY 8438827 8439179 -16273900 - MLT1A1 LTR MaLR 0 365 1 23 0 0 0 chrY 8439529 8439552 -16273527 + AT_rich Low_complexity Low_complexity 1 23 0 1756 182 49 0 chrY 8440074 8440382 -16272697 + MST-int LTR MaLR 1249 1571 -80 1958 124 0 40 chrY 8440390 8440717 -16272362 + AluY SINE Alu 6 311 0 2398 187 15 41 chrY 8440718 8441033 -16272046 - L1MB5 LINE L1 -37 6137 5840 2199 112 3 7 chrY 8441033 8441336 -16271743 - AluSc SINE Alu -1 308 7 2398 187 15 41 chrY 8441336 8441559 -16271520 - L1MB5 LINE L1 -334 5840 5613 1700 210 0 0 chrY 8441587 8441878 -16271201 + AluJo SINE Alu 3 293 -19 585 238 123 87 chrY 8442525 8443016 -16270063 - MER34C LTR ERV1 -64 501 5 235 176 39 20 chrY 8443269 8443320 -16269759 + MLT1C LTR MaLR 130 181 -209 776 179 0 7 chrY 8443320 8443460 -16269619 + AluJb SINE Alu 3 141 -171 1116 254 17 17 chrY 8443488 8443787 -16269292 + MLT1C LTR MaLR 169 467 0 3270 140 22 15 chrY 8444075 8444618 -16268461 - L1PB4 LINE L1 0 6156 5610 216 327 109 27 chrY 8445205 8445462 -16267617 - L2 LINE L2 -167 3105 2828 289 315 216 4 chrY 8445783 8446037 -16267042 + L2 LINE L2 2963 3270 -2 235 228 0 35 chrY 8446333 8446390 -16266689 + (TATATG)n Simple_repeat Simple_repeat 5 59 0 680 218 63 17 chrY 8447313 8447487 -16265592 - AluJb SINE Alu -15 297 116 809 234 152 4 chrY 8447587 8447856 -16265223 - MLT1E2 LTR MaLR -207 419 111 3651 30 0 0 chrY 8449027 8449458 -16263621 - L1P LINE L1 -1014 5132 4702 * 5981 31 0 4 chrY 8449455 8450161 -16262918 + L1P LINE L1 4003 4705 -1441 2386 94 0 0 chrY 8451759 8452068 -16261011 + AluY SINE Alu 3 311 0 234 0 0 0 chrY 8454071 8454097 -16258982 + (TG)n Simple_repeat Simple_repeat 2 27 0 306 313 8 31 chrY 8455087 8455215 -16257864 + L2 LINE L2 2715 2839 -475 264 200 0 0 chrY 8657394 8657444 -16055635 + AluJ/FRAM SINE Alu 233 282 -20 441 0 0 0 chrY 8657456 8657505 -16055574 + (TAA)n Simple_repeat Simple_repeat 2 50 0 198 0 0 0 chrY 8657504 8657526 -16055553 + (GA)n Simple_repeat Simple_repeat 2 23 0 * 980 252 65 9 chrY 8657635 8658338 -16054741 - L1M4 LINE L1 -3542 2840 2098 484 249 81 1 chrY 8658455 8658676 -16054403 - L1M4 LINE L1 -4456 1926 1612 434 295 57 34 chrY 8658702 8659067 -16054012 - L1M4 LINE L1 -4517 1786 1128 247 81 0 27 chrY 8659079 8659116 -16053963 + (TTCC)n Simple_repeat Simple_repeat 3 38 0 353 147 0 15 chrY 8659117 8659185 -16053894 + (TCCCC)n Simple_repeat Simple_repeat 5 71 0 851 228 103 23 chrY 8659189 8659452 -16053627 - AluJo SINE Alu -3 309 26 332 276 24 24 chrY 8659454 8659581 -16053498 - L1M4 LINE L1 -5265 1119 993 663 266 15 0 chrY 8659592 8659795 -16053284 + L1MB2 LINE L1 3734 3939 -2207 1281 221 4 30 chrY 8659799 8660061 -16053018 + AluJo SINE Alu 1 255 -57 204 40 0 0 chrY 8660090 8660115 -16052964 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 2158 254 87 44 chrY 8660142 8660442 -16052637 + L1MB2 LINE L1 3967 4253 -1893 387 0 0 0 chrY 8660442 8660485 -16052594 + (CA)n Simple_repeat Simple_repeat 2 44 0 2158 254 87 44 chrY 8660485 8661372 -16051707 + L1MB2 LINE L1 4253 5205 -941 243 0 0 0 chrY 8661372 8661399 -16051680 + (A)n Simple_repeat Simple_repeat 1 27 0 1734 208 89 109 chrY 8661404 8661953 -16051126 + L1MB2 LINE L1 5299 5857 -314 1475 113 5 0 chrY 8661953 8662148 -16050931 + AluSc SINE Alu 1 196 -113 337 115 16 0 chrY 8662149 8662210 -16050869 + AluSc SINE Alu 238 299 0 1734 208 89 109 chrY 8662210 8662449 -16050630 + L1MB2 LINE L1 5856 6132 -39 1952 160 7 0 chrY 8662470 8662776 -16050303 + AluSx SINE Alu 5 312 0 651 244 76 23 chrY 8662807 8663110 -16049969 + Charlie2 DNA MER1_type 2004 2322 -540 638 329 71 53 chrY 8663245 8663883 -16049196 - L2 LINE L2 -255 3058 2415 1339 188 22 43 chrY 8663945 8664222 -16048857 - AluJo SINE Alu -21 291 21 749 226 84 8 chrY 8664298 8664665 -16048414 + Charlie2 DNA MER1_type 2393 2787 -75 430 320 74 7 chrY 8664711 8664995 -16048084 - L1ME LINE L1 -482 5688 5386 424 258 27 86 chrY 8665133 8665216 -16047863 - L1ME LINE L1 -888 5258 5172 1646 197 17 14 chrY 8665216 8665506 -16047573 + AluJb SINE Alu 1 291 -21 424 258 27 86 chrY 8665506 8665643 -16047436 - L1ME LINE L1 -974 5172 5051 335 263 103 67 chrY 8665655 8665879 -16047200 + L1ME3A LINE L1 5793 6024 -146 314 331 83 6 chrY 8665976 8666145 -16046934 + MIR SINE MIR 9 190 -72 807 269 47 25 chrY 8666287 8666566 -16046513 - MLT1E LTR MaLR -1 592 308 250 267 13 13 chrY 8666576 8666651 -16046428 - MLT1F LTR MaLR -467 75 1 2099 128 3 0 chrY 8666803 8667100 -16045979 + AluSg1 SINE Alu 1 298 -11 236 190 0 89 chrY 8668240 8668319 -16044760 + CT-rich Low_complexity Low_complexity 4 75 0 2736 93 30 5 chrY 8668939 8669367 -16043712 - LTR7 LTR ERV1 -11 439 1 500 228 80 25 chrY 8669497 8669590 -16043489 + MER45A DNA AcHobo 1 108 -1473 1865 163 30 3 chrY 8669590 8669891 -16043188 - AluSx SINE Alu -3 309 1 500 228 80 25 chrY 8669891 8669959 -16043120 + MER45A DNA AcHobo 108 171 -7 336 323 74 9 chrY 8670201 8670418 -16042661 - LTR50 LTR ERVL -112 683 453 863 273 92 44 chrY 8670770 8671225 -16041854 + L1M4 LINE L1 8 484 -6058 877 267 31 16 chrY 8671243 8671708 -16041371 - MER74A LTR ERVL 0 622 89 373 314 80 29 chrY 8671753 8671992 -16041087 + L1M4 LINE L1 523 773 -5769 951 167 103 138 chrY 8672011 8672174 -16040905 + AluY SINE Alu 1 149 -152 1191 112 0 0 chrY 8672174 8672353 -16040726 + (GAA)n Simple_repeat Simple_repeat 1 179 0 951 167 103 138 chrY 8672353 8672500 -16040579 + AluY SINE Alu 149 300 -1 213 296 0 0 chrY 8672509 8672580 -16040499 + A-rich Low_complexity Low_complexity 1 71 0 467 257 71 11 chrY 8672604 8672787 -16040292 + L1M4 LINE L1 984 1177 -5365 264 230 40 20 chrY 8672833 8672933 -16040146 - L1MA8 LINE L1 -3 6288 6187 654 200 75 0 chrY 8672969 8673089 -16039990 - FLAM_A SINE Alu 0 133 5 599 201 20 106 chrY 8673089 8673343 -16039736 - L1M3e LINE L1 -3280 3048 2817 497 129 43 0 chrY 8673392 8673485 -16039594 + L1 LINE L1 3479 3575 -2571 902 227 33 115 chrY 8673537 8674021 -16039058 - L1M3e LINE L1 -3514 2814 2379 2198 96 0 20 chrY 8674021 8674314 -16038765 - AluSc SINE Alu -22 287 1 902 227 33 115 chrY 8674314 8674376 -16038703 - L1M3e LINE L1 -3949 2379 2313 376 156 0 0 chrY 8674381 8674445 -16038634 - AluSx SINE Alu -9 292 229 666 229 28 1 chrY 8674472 8674658 -16038421 - MER61E LTR ERV1 -6 773 340 361 174 65 11 chrY 8674836 8674928 -16038151 - LTR25 LTR ERV1 -428 366 270 1251 155 0 21 chrY 8675101 8675295 -16037784 - AluSq SINE Alu -24 289 100 294 95 0 0 chrY 8675295 8675337 -16037742 + (A)n Simple_repeat Simple_repeat 1 42 0 839 129 9 0 chrY 8675337 8675453 -16037626 - AluSq SINE Alu -196 117 1 267 233 56 33 chrY 8675456 8675546 -16037533 - LTR9 LTR ERV1 -512 100 9 1259 173 4 76 chrY 8675554 8675652 -16037427 - AluSx SINE Alu -79 233 129 2154 113 3 10 chrY 8675652 8675953 -16037126 - AluSg SINE Alu -11 299 1 1259 173 4 76 chrY 8675953 8676103 -16036976 - AluSx SINE Alu -183 129 3 1299 240 182 42 chrY 8676104 8676360 -16036719 - L1M3e LINE L1 -3996 2332 2113 1951 133 4 7 chrY 8676360 8676667 -16036412 + AluSp SINE Alu 5 310 0 1299 240 182 42 chrY 8676667 8676756 -16036323 - L1M3e LINE L1 -4215 2113 2038 1149 210 100 15 chrY 8676756 8677027 -16036052 - AluJb SINE Alu -8 294 1 1299 240 182 42 chrY 8677027 8677638 -16035441 - L1M3e LINE L1 -4290 2038 1260 21 36 0 0 chrY 8677653 8677681 -16035398 + AT_rich Low_complexity Low_complexity 1 28 0 222 134 45 0 chrY 8677690 8677757 -16035322 + (TA)n Simple_repeat Simple_repeat 1 70 0 550 219 65 14 chrY 8677781 8677996 -16035083 - L1 LINE L1 -4141 1187 962 471 149 0 0 chrY 8678006 8678080 -16034999 + AluS SINE Alu 229 302 -10 381 242 63 77 chrY 8678101 8678182 -16034897 - L1M3e LINE L1 -4984 1268 1187 2097 138 0 7 chrY 8678182 8678478 -16034601 - AluSx SINE Alu -18 294 1 381 242 63 77 chrY 8678478 8678646 -16034433 - L1M3e LINE L1 -5065 1187 1018 2201 173 68 15 chrY 8678646 8679113 -16033966 + LTR22B LTR ERVK 1 492 0 381 242 63 77 chrY 8679113 8679158 -16033921 - L1M3e LINE L1 -5234 1018 661 228 371 9 0 chrY 8679259 8679375 -16033704 - L1M3e LINE L1 -4754 574 458 1097 153 67 40 chrY 8679384 8679607 -16033472 + MER30 DNA MER1_type 2 230 0 4200 216 79 61 chrY 8679625 8681074 -16032005 + L1PB4 LINE L1 27 1448 -4880 1820 187 0 3 chrY 8681074 8681368 -16031711 + AluSx SINE Alu 1 293 -19 4200 216 79 61 chrY 8681368 8682229 -16030850 + L1PB4 LINE L1 1448 2383 -3945 1550 217 3 6 chrY 8682229 8682542 -16030537 + AluJb SINE Alu 1 312 0 4200 216 79 61 chrY 8682542 8683191 -16029888 + L1PB4 LINE L1 2383 3018 -3310 1186 238 13 16 chrY 8683213 8683501 -16029578 + L1PB4 LINE L1 4558 4846 -1482 198 0 0 0 chrY 8683501 8683523 -16029556 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 1186 238 13 16 chrY 8683523 8683612 -16029467 + L1PB4 LINE L1 4846 4934 -1394 1710 176 3 14 chrY 8683613 8683902 -16029177 + AluJb SINE Alu 3 288 -24 198 50 75 0 chrY 8683902 8683942 -16029137 + (TA)n Simple_repeat Simple_repeat 1 43 0 21 0 0 0 chrY 8683980 8684001 -16029078 + AT_rich Low_complexity Low_complexity 1 21 0 243 241 101 0 chrY 8684026 8684105 -16028974 + L1MC4 LINE L1 6612 6698 -1344 1016 230 22 4 chrY 8684114 8684388 -16028691 + L1PB4 LINE L1 4920 5198 -1130 3855 164 7 4 chrY 8684388 8685126 -16027953 - L1P LINE L1 -1195 4951 4212 4285 131 10 0 chrY 8685130 8685803 -16027276 + L1PA10 LINE L1 5486 6165 -3 1852 148 0 0 chrY 8685831 8686102 -16026977 - AluSx SINE Alu -41 271 1 4303 185 39 1 chrY 8686106 8687162 -16025917 + L1PB4 LINE L1 5227 6330 -8 461 306 48 77 chrY 8687253 8687373 -16025706 + L1MC4a LINE L1 4910 5032 -1114 2158 136 10 0 chrY 8687373 8687682 -16025397 + AluSx SINE Alu 1 312 0 461 306 48 77 chrY 8687682 8688058 -16025021 + L1MC4a LINE L1 5032 5392 -754 2232 120 3 0 chrY 8688061 8688360 -16024719 + AluSg SINE Alu 1 300 -10 1046 233 39 16 chrY 8688405 8688663 -16024416 + AluJo SINE Alu 19 282 -30 1102 293 75 22 chrY 8688701 8689329 -16023750 + L1MC4a LINE L1 5440 6100 -1708 3902 237 76 96 chrY 8689338 8690490 -16022589 - L1PA15-16 LINE L1 -3733 3116 1942 996 177 0 0 chrY 8690490 8690663 -16022416 - AluSg/x SINE Alu 0 306 134 3902 237 76 96 chrY 8690663 8691695 -16021384 - L1PA15-16 LINE L1 -4907 1942 600 1719 209 24 40 chrY 8691698 8692005 -16021074 - L1PA15-16 LINE L1 -6433 416 116 2173 137 0 9 chrY 8692005 8692320 -16020759 - AluSx SINE Alu 0 312 1 1719 209 24 40 chrY 8692320 8692433 -16020646 - L1PA15-16 LINE L1 -6733 116 3 471 214 24 8 chrY 8692438 8692564 -16020515 - L1M4c LINE L1 -2535 3847 3720 574 183 161 0 chrY 8692666 8692803 -16020276 + AluJb SINE Alu 1 159 -153 384 249 138 37 chrY 8692831 8693156 -16019923 - L1M4c LINE L1 -2694 3688 3331 360 285 48 30 chrY 8693171 8693441 -16019638 - L1M4c LINE L1 -3270 3112 2702 185 269 0 8 chrY 8693464 8693598 -16019481 + (TA)n Simple_repeat Simple_repeat 2 134 0 1063 200 10 10 chrY 8693647 8693847 -16019232 - AluJb SINE Alu -112 200 1 2095 125 23 0 chrY 8694013 8694316 -16018763 + AluSg SINE Alu 1 310 0 1217 153 13 47 chrY 8694954 8695190 -16017889 + MER57A LTR ERV1 135 362 -41 482 191 91 100 chrY 8695203 8695433 -16017646 - L1M4c LINE L1 -4014 2370 2143 1329 291 79 16 chrY 8695524 8696566 -16016513 - L1M4c LINE L1 -4244 2139 1041 366 327 75 31 chrY 8696992 8697218 -16015861 - L1M4c LINE L1 -5896 417 182 418 237 109 11 chrY 8697218 8697501 -16015578 + L1MDb LINE L1 1053 1363 -5046 5868 211 153 11 chrY 8697501 8698981 -16014098 - MER52A LTR ERV1 0 1755 67 1181 274 140 41 chrY 8699010 8699309 -16013770 + L1M4 LINE L1 2737 3005 -3141 1374 227 52 0 chrY 8699309 8699578 -16013501 - AluJo SINE Alu -27 285 3 1181 274 140 41 chrY 8699578 8700782 -16012297 + L1M4 LINE L1 3005 4389 -1757 8076 238 61 50 chrY 8700806 8704232 -16008847 + L1MA4A LINE L1 9 3399 -3449 1474 200 54 0 chrY 8704232 8704512 -16008567 + AluJo SINE Alu 5 299 -13 8076 238 61 50 chrY 8704512 8704533 -16008546 + L1MA4A LINE L1 3399 3418 -3430 575 178 44 59 chrY 8704533 8704668 -16008411 + FLAM_C SINE Alu 1 133 0 8076 238 61 50 chrY 8704668 8705312 -16007767 + L1MA4A LINE L1 3418 4148 -2700 1864 142 44 3 chrY 8705312 8705608 -16007471 + AluSg1 SINE Alu 1 308 -1 8076 238 61 50 chrY 8705608 8705854 -16007225 + L1MA4A LINE L1 4148 4390 -2458 2603 203 57 37 chrY 8706005 8706492 -16006587 + L1MA4A LINE L1 5215 5691 -1199 1648 174 8 0 chrY 8706492 8706756 -16006323 + AluSq SINE Alu 24 289 -24 378 57 43 14 chrY 8706759 8706829 -16006250 + (TAAAA)n Simple_repeat Simple_repeat 2 73 0 2603 203 57 37 chrY 8706829 8707264 -16005815 + L1MA4A LINE L1 5692 6145 -745 1722 198 24 54 chrY 8707278 8707335 -16005744 + L1MA4A LINE L1 6520 6577 -428 1645 195 7 0 chrY 8707335 8707622 -16005457 - AluJb SINE Alu -23 289 1 1722 198 24 54 chrY 8707622 8708065 -16005014 + L1MA4A LINE L1 6577 7005 0 360 309 73 0 chrY 8708077 8708213 -16004866 + L1M2 LINE L1 5131 5276 -1572 611 268 130 13 chrY 8708300 8708685 -16004394 + L1M2 LINE L1 5299 5728 -1120 1985 133 7 7 chrY 8709475 8709768 -16003311 - AluSx SINE Alu -17 295 3 2060 115 33 10 chrY 8710117 8710422 -16002657 + AluSq SINE Alu 2 313 0 1966 139 0 44 chrY 8710922 8711238 -16001841 + AluSg SINE Alu 1 302 -8 201 220 40 0 chrY 8712432 8712482 -16000597 + (CATATA)n Simple_repeat Simple_repeat 3 54 0 25 0 0 0 chrY 8712837 8712862 -16000217 + AT_rich Low_complexity Low_complexity 1 25 0 2158 124 7 0 chrY 8713533 8713831 -15999248 - AluSp SINE Alu -11 302 3 22 35 0 0 chrY 8713973 8714002 -15999077 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chrY 8714703 8714724 -15998355 + AT_rich Low_complexity Low_complexity 1 21 0 2797 3 0 0 chrY 8715413 8715715 -15997364 + AluYa5 SINE Alu 1 302 -9 3348 122 8 6 chrY 8716041 8716551 -15996528 + MER9 LTR ERVK 1 511 0 24579 76 9 7 chrY 8716551 8719952 -15993127 + HERVK9 LTR ERVK 1 3409 -2507 15054 73 6 0 chrY 8719974 8721993 -15991086 + HERVK9 LTR ERVK 3603 5634 -282 2064 75 11 0 chrY 8722089 8722368 -15990711 + HERVK9 LTR ERVK 5635 5916 0 3496 115 4 6 chrY 8722368 8722880 -15990199 + MER9 LTR ERVK 1 511 0 200 185 25 111 chrY 8724900 8724981 -15988098 + L2 LINE L2 3171 3244 -69 24 67 0 0 chrY 8724999 8725044 -15988035 + AT_rich Low_complexity Low_complexity 1 45 0 227 285 47 99 chrY 8725763 8725954 -15987125 - MIR3 SINE MIR -63 145 2 2168 116 3 0 chrY 8726076 8726368 -15986711 - AluSq SINE Alu -10 303 11 21 36 0 0 chrY 8726623 8726651 -15986428 + AT_rich Low_complexity Low_complexity 1 28 0 23757 123 55 25 chrY 8727344 8733067 -15980012 - L1PA7 LINE L1 -50 6419 378 552 15 0 0 chrY 8733067 8733132 -15979947 + (CAAAA)n Simple_repeat Simple_repeat 2 66 0 23757 123 55 25 chrY 8733132 8733522 -15979557 - L1PA7 LINE L1 -6091 378 1 2947 157 47 32 chrY 8733644 8734237 -15978842 + LTR43 LTR ERV1 1 602 0 1561 207 10 3 chrY 8734314 8734613 -15978466 + AluJb SINE Alu 3 303 -9 201 294 78 0 chrY 8734980 8735031 -15978048 - MIR SINE MIR -196 66 12 267 292 42 0 chrY 8735064 8735136 -15977943 + MIR SINE MIR 113 187 -75 789 255 40 51 chrY 8735203 8735617 -15977462 + MLT1D LTR MaLR 26 500 -5 316 341 59 24 chrY 8735842 8736012 -15977067 - MIR SINE MIR -86 176 1 183 42 0 0 chrY 8736251 8736275 -15976804 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 602 217 51 29 chrY 8736280 8736418 -15976661 - AluSc SINE Alu -37 272 132 224 203 38 0 chrY 8737335 8737414 -15975665 + (TA)n Simple_repeat Simple_repeat 2 83 0 392 266 55 64 chrY 8737503 8737721 -15975358 + L1MC4 LINE L1 7390 7645 -203 1009 104 104 0 chrY 8737743 8737906 -15975173 - L1PA7 LINE L1 -110 6044 5865 841 96 0 0 chrY 8737906 8738018 -15975061 + L1PA7 LINE L1 6037 6151 -3 2017 95 46 11 chrY 8738024 8738343 -15974736 + AluSp SINE Alu 1 313 0 401 308 57 44 chrY 8738377 8738692 -15974387 + L1MC4 LINE L1 7723 8041 -1 1431 222 3 14 chrY 8739477 8739765 -15973314 + AluJb SINE Alu 1 285 -27 201 74 0 0 chrY 8739765 8739792 -15973287 + (TGAA)n Simple_repeat Simple_repeat 3 29 0 721 249 91 56 chrY 8739816 8739942 -15973137 + L1M1 LINE L1 2796 2916 -4650 2178 74 3 65 chrY 8739942 8740267 -15972812 + AluY SINE Alu 1 305 -6 721 249 91 56 chrY 8740267 8740646 -15972433 + L1M1 LINE L1 2916 3340 -4226 13084 197 111 29 chrY 8740844 8742769 -15970310 + L1M1 LINE L1 22 1788 -5777 1820 174 3 7 chrY 8742769 8743062 -15970017 - AluSg SINE Alu -18 292 1 13084 197 111 29 chrY 8743062 8743627 -15969452 + L1M1 LINE L1 1788 2305 -5260 1911 136 25 3 chrY 8743627 8743913 -15969166 + AluSq SINE Alu 1 292 -21 13084 197 111 29 chrY 8743913 8744031 -15969048 + L1M1 LINE L1 2305 2412 -5153 2044 121 7 10 chrY 8744031 8744328 -15968751 - AluSq SINE Alu -17 296 1 13084 197 111 29 chrY 8744328 8745638 -15967441 + L1M1 LINE L1 2412 4262 -3303 321 289 22 0 chrY 8745723 8745813 -15967266 + L1M1 LINE L1 4288 4379 -3186 3652 69 31 4 chrY 8745814 8746291 -15966788 + LTR2B LTR ERV1 1 490 0 2292 117 30 0 chrY 8746291 8746660 -15966419 + Harlequin LTR ERV1 1 380 -6516 * 4518 66 9 20 chrY 8746655 8747294 -15965785 + Harlequin LTR ERV1 262 893 -6003 * 4978 66 30 2 chrY 8747287 8748240 -15964839 + Harlequin LTR ERV1 1572 2574 -4322 * 12465 111 12 2 chrY 8748239 8750080 -15962999 + Harlequin LTR ERV1 3352 5210 -1686 8972 164 16 19 chrY 8751065 8752770 -15960309 + Harlequin LTR ERV1 5196 6896 0 3413 78 58 0 chrY 8752770 8753232 -15959847 + LTR2B LTR ERV1 1 489 -1 257 280 2 40 chrY 8753272 8753482 -15959597 + L1M1 LINE L1 3801 4003 -3562 189 94 0 0 chrY 8753495 8753527 -15959552 + (A)n Simple_repeat Simple_repeat 1 32 0 2307 199 64 45 chrY 8753541 8754079 -15959000 + L1M1 LINE L1 4403 4929 -2636 1974 157 10 0 chrY 8754079 8754379 -15958700 - AluSq SINE Alu -10 303 1 2307 199 64 45 chrY 8754379 8754400 -15958679 + L1M1 LINE L1 4929 4948 -2617 1736 96 131 4 chrY 8754400 8754660 -15958419 - AluSc SINE Alu -16 293 1 2307 199 64 45 chrY 8754660 8754894 -15958185 + L1M1 LINE L1 4948 5212 -2353 1975 114 74 0 chrY 8754891 8755245 -15957834 + L1PA10 LINE L1 5799 6176 0 * 1388 199 19 16 chrY 8755248 8755570 -15957509 + L1M1 LINE L1 5203 5525 -2040 4694 236 48 42 chrY 8755570 8755683 -15957396 + L1MA9 LINE L1 4606 4717 -2848 2086 128 7 7 chrY 8755683 8755989 -15957090 + AluSg SINE Alu 1 306 -4 4694 236 48 42 chrY 8755989 8756838 -15956241 + L1MA9 LINE L1 4717 5559 -2006 2023 133 7 17 chrY 8756838 8757131 -15955948 - AluSc SINE Alu -19 290 1 4694 236 48 42 chrY 8757131 8758028 -15955051 + L1MA9 LINE L1 5559 6477 -1088 660 251 52 14 chrY 8758043 8758254 -15954825 + L1MA9 LINE L1 7290 7508 -223 1521 220 30 44 chrY 8758256 8758290 -15954789 - MSTB1 LTR MaLR -6 426 393 2149 114 3 7 chrY 8758290 8758598 -15954481 + AluSq SINE Alu 1 307 -6 1521 220 30 44 chrY 8758598 8758995 -15954084 - MSTB1 LTR MaLR -39 393 1 4575 231 106 43 chrY 8758996 8760523 -15952556 - MSTB1-int LTR MaLR -3 1648 34 1010 147 162 5 chrY 8760561 8760765 -15952314 - MSTB1 LTR MaLR 0 432 197 294 188 12 35 chrY 8760768 8760853 -15952226 + L1MA9 LINE L1 7637 7719 -12 282 354 53 24 chrY 8761537 8761674 -15951405 - MIR SINE MIR -20 242 95 189 74 0 0 chrY 8761674 8761701 -15951378 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 282 354 53 24 chrY 8761701 8761772 -15951307 - MIR SINE MIR -167 95 28 2460 97 0 0 chrY 8761987 8762296 -15950783 + AluY SINE Alu 1 309 -2 1677 169 0 60 chrY 8762819 8763150 -15949929 + AluSx SINE Alu 1 311 -1 1804 128 3 74 chrY 8763797 8764109 -15948970 + AluSx SINE Alu 3 292 -20 1889 167 10 0 chrY 8764406 8764705 -15948374 - AluSx SINE Alu -10 302 1 972 220 180 12 chrY 8765959 8766209 -15946870 - AluJb SINE Alu -19 293 2 2856 224 102 30 chrY 8767333 8768442 -15944637 + Cheshire DNA MER1_type 1215 2403 -17 773 159 0 0 chrY 8770214 8770340 -15942739 - AluSg/x SINE Alu -11 301 176 24 85 0 0 chrY 8770747 8770806 -15942273 + AT_rich Low_complexity Low_complexity 1 59 0 1685 253 49 42 chrY 8770864 8771484 -15941595 + L1MB8 LINE L1 4909 5523 -655 1822 173 10 13 chrY 8771484 8771790 -15941289 + AluSx SINE Alu 1 305 -7 1685 253 49 42 chrY 8771790 8771851 -15941228 + L1MB8 LINE L1 5523 5582 -596 1796 189 14 0 chrY 8771851 8772148 -15940931 + AluSx SINE Alu 1 301 -11 1685 253 49 42 chrY 8772148 8772724 -15940355 + L1MB8 LINE L1 5582 6176 -2 2424 87 0 3 chrY 8772823 8773134 -15939945 + AluY SINE Alu 1 310 -1 2370 95 0 0 chrY 8773449 8773753 -15939326 + AluY SINE Alu 1 304 -7 846 278 68 16 chrY 8773771 8774199 -15938880 + L1MB4 LINE L1 3640 4089 -2057 3362 192 64 56 chrY 8774207 8774321 -15938758 + L1PA16 LINE L1 4529 4641 -1525 2172 98 10 10 chrY 8774321 8774617 -15938462 + AluY SINE Alu 1 296 -15 3362 192 64 56 chrY 8774617 8774828 -15938251 + L1PA16 LINE L1 4641 4849 -1317 2697 17 0 0 chrY 8774828 8775125 -15937954 + AluY SINE Alu 1 297 -14 3362 192 64 56 chrY 8775125 8775625 -15937454 + L1PA16 LINE L1 4849 5344 -822 2617 10 0 3 chrY 8775625 8775918 -15937161 + AluY SINE Alu 1 292 -19 3362 192 64 56 chrY 8775918 8775996 -15937083 + L1PA16 LINE L1 5344 5420 -746 1981 123 27 3 chrY 8775996 8776289 -15936790 + AluSp SINE Alu 1 300 -13 3362 192 64 56 chrY 8776289 8776651 -15936428 + L1PA16 LINE L1 5420 5778 -388 4162 104 55 14 chrY 8776651 8777292 -15935787 + PABL_B LTR ERV1 1 667 0 3362 192 64 56 chrY 8777292 8777670 -15935409 + L1PA16 LINE L1 5778 6154 -12 1880 100 4 8 chrY 8777690 8777949 -15935130 + AluY SINE Alu 45 302 -9 1146 272 72 10 chrY 8777952 8778441 -15934638 + L1MB4 LINE L1 4720 5238 -908 296 283 11 0 chrY 8778469 8778571 -15934508 + L1MB4 LINE L1 5525 5627 -547 468 195 163 14 chrY 8778597 8778804 -15934275 + L1MB4 LINE L1 5688 5939 -236 2213 118 3 0 chrY 8778845 8779151 -15933928 + AluSp SINE Alu 5 311 -2 375 149 0 15 chrY 8779200 8779267 -15933812 + MER4A LTR ERV1 33 98 -566 1352 154 20 49 chrY 8779267 8779623 -15933456 + MER4A LTR ERV1 261 664 0 2987 116 143 45 chrY 8779627 8780324 -15932755 + MER4A-int LTR ERV1 2 835 -5763 266 125 0 0 chrY 8780422 8780470 -15932609 + MER4A-int LTR ERV1 839 886 -5712 * 365 150 0 0 chrY 8780468 8780528 -15932551 + MER4A-int LTR ERV1 993 1052 -5546 1906 162 0 0 chrY 8780528 8780818 -15932261 - AluSx SINE Alu -22 290 1 438 122 0 0 chrY 8780818 8780892 -15932187 + MER4A-int LTR ERV1 2420 2493 -4105 1031 167 103 8 chrY 8780895 8781129 -15931950 - LTR8 LTR ERV1 -435 256 1 2615 147 82 98 chrY 8781129 8781393 -15931686 + MER4A-int LTR ERV1 2737 3004 -3594 1997 139 11 0 chrY 8781393 8781739 -15931340 + AluSx SINE Alu 1 349 0 2615 147 82 98 chrY 8781739 8782243 -15930836 + MER4A-int LTR ERV1 3004 3491 -3107 1751 164 22 0 chrY 8782243 8782518 -15930561 + AluSc SINE Alu 1 281 -28 2615 147 82 98 chrY 8782518 8782705 -15930374 + MER4A-int LTR ERV1 3491 3679 -2919 10223 131 85 18 chrY 8782713 8784819 -15928260 + MER4A-int LTR ERV1 3842 6088 -510 649 78 0 0 chrY 8784821 8784911 -15928168 + MER4A-int LTR ERV1 6495 6584 -14 444 158 32 11 chrY 8784930 8785025 -15928054 + MER4A LTR ERV1 1 97 -567 1676 158 9 22 chrY 8785026 8785374 -15927705 + MER4A LTR ERV1 261 662 -2 477 220 45 9 chrY 8785380 8785529 -15927550 + L1MB3 LINE L1 6001 6144 -27 1895 155 7 0 chrY 8785802 8786098 -15926981 - AluSx SINE Alu -14 298 1 2173 126 3 7 chrY 8786631 8786940 -15926139 + AluSx SINE Alu 3 310 -2 321 177 0 0 chrY 8787585 8787647 -15925432 + MER4A-int LTR ERV1 4405 4466 -1120 537 103 35 0 chrY 8787650 8787737 -15925342 + MER4A-int LTR ERV1 6495 6584 -14 459 156 31 10 chrY 8787757 8787853 -15925226 + MER4A LTR ERV1 1 98 -566 673 234 41 18 chrY 8789369 8789540 -15923539 - MER58A DNA MER1_type -12 212 38 23 33 0 0 chrY 8790528 8790558 -15922521 + AT_rich Low_complexity Low_complexity 1 30 0 1905 130 3 0 chrY 8791461 8791789 -15921290 + AluSp SINE Alu 2 330 0 241 242 15 0 chrY 8792122 8792188 -15920891 + CT-rich Low_complexity Low_complexity 4 70 0 23 54 0 0 chrY 8792436 8792473 -15920606 + AT_rich Low_complexity Low_complexity 1 37 0 461 269 0 7 chrY 8793063 8793208 -15919871 + L1MB8 LINE L1 6029 6172 -6 8245 153 92 17 chrY 8793755 8795511 -15917568 + L1P3 LINE L1 14 1885 -4576 * 10995 127 24 7 chrY 8795507 8797271 -15915808 + L1P LINE L1 3379 5182 -964 3244 121 29 26 chrY 8797271 8797817 -15915262 + LTR14 LTR ERVK 1 548 0 10995 127 24 7 chrY 8797817 8797992 -15915087 + L1P LINE L1 5182 5352 -794 6050 89 15 2 chrY 8797992 8798874 -15914205 + L1PA8 LINE L1 5270 6163 -9 654 274 69 19 chrY 8800230 8800693 -15912386 + L1M4 LINE L1 2700 3185 -2961 403 291 89 22 chrY 8800834 8801147 -15911932 + L1M4 LINE L1 3555 3888 -2258 * 801 240 103 6 chrY 8801140 8801469 -15911610 + L1M4 LINE L1 4692 5052 -1094 244 139 70 128 chrY 8801482 8801527 -15911552 - MLT2C1 LTR ERVL -243 154 115 1808 146 0 76 chrY 8801527 8801742 -15911337 - AluSx SINE Alu -9 303 120 2085 134 0 19 chrY 8801742 8802055 -15911024 + AluSx SINE Alu 1 307 -5 1808 146 0 76 chrY 8802055 8802167 -15910912 - AluSx SINE Alu -192 120 1 244 139 70 128 chrY 8802167 8802207 -15910872 - MLT2C1 LTR ERVL -282 115 74 484 225 116 66 chrY 8802291 8802727 -15910352 + LTR15 LTR ERV1 193 596 0 15519 285 42 47 chrY 8802746 8810256 -15902823 + HERV3 LTR ERV1 19 7724 -1011 437 374 0 9 chrY 8810329 8810556 -15902523 + HERV3 LTR ERV1 8202 8426 0 683 235 90 108 chrY 8810647 8810954 -15902125 + LTR30 LTR ERV1 108 368 -125 2095 105 0 14 chrY 8810954 8811249 -15901830 + AluY SINE Alu 1 291 -20 683 235 90 108 chrY 8811249 8811373 -15901706 + LTR30 LTR ERV1 368 493 0 208 320 73 87 chrY 8811545 8811845 -15901234 - L2 LINE L2 -22 3291 2996 310 227 40 13 chrY 8811857 8811932 -15901147 - MER2 DNA MER2_type 0 345 269 568 253 56 25 chrY 8812210 8812372 -15900707 + L1MB5 LINE L1 5854 6020 -154 * 1764 269 53 37 chrY 8812347 8812965 -15900114 + L1MCa LINE L1 130 757 -5669 625 166 7 28 chrY 8813023 8813168 -15899911 + LTR21A LTR ERV1 345 486 -19 554 215 77 48 chrY 8813168 8813377 -15899702 + L1MCa LINE L1 1346 1560 -4866 1488 217 49 23 chrY 8813386 8813731 -15899348 + MLT1A1 LTR MaLR 11 364 -1 311 203 170 4 chrY 8813732 8813865 -15899214 + L1MCa LINE L1 1554 1815 -4611 348 252 65 9 chrY 8813884 8813991 -15899088 + L1MC2 LINE L1 6222 6334 -10 1809 185 96 23 chrY 8814147 8814575 -15898504 + LTR2B LTR ERV1 32 490 0 355 266 13 0 chrY 8814954 8815033 -15898046 - Tigger7 DNA MER2_type 0 2487 2408 1213 203 58 16 chrY 8815046 8815288 -15897791 - Tigger7 DNA MER2_type -466 267 16 9563 166 68 74 chrY 8815339 8815824 -15897255 + Tigger1 DNA MER2_type 1 488 -1930 1663 184 0 7 chrY 8815824 8816123 -15896956 - AluJo SINE Alu -15 297 1 9563 166 68 74 chrY 8816123 8817639 -15895440 + Tigger1 DNA MER2_type 488 1987 -431 1879 138 18 0 chrY 8817639 8817921 -15895158 + AluSx SINE Alu 5 291 -21 9563 166 68 74 chrY 8817921 8818351 -15894728 + Tigger1 DNA MER2_type 1987 2418 0 2191 107 0 0 chrY 8819670 8819969 -15893110 - AluY SINE Alu -12 299 1 1994 130 0 7 chrY 8820036 8820336 -15892743 + AluSc SINE Alu 6 303 -6 351 294 125 33 chrY 8820467 8820651 -15892428 + L1MC4a LINE L1 5697 5897 -1911 260 125 0 0 chrY 8820705 8820753 -15892326 + AluSp/q SINE Alu 255 302 -1 1774 170 7 7 chrY 8820783 8821077 -15892002 + AluSx SINE Alu 1 294 -18 21 36 0 0 chrY 8821599 8821627 -15891452 + AT_rich Low_complexity Low_complexity 1 28 0 34 65 0 0 chrY 8822425 8822487 -15890592 + AT_rich Low_complexity Low_complexity 1 62 0 21 36 0 0 chrY 8823252 8823280 -15889799 + AT_rich Low_complexity Low_complexity 1 28 0 1281 244 3 10 chrY 8823549 8823852 -15889227 - AluJb SINE Alu -11 301 1 348 327 42 42 chrY 8825759 8825927 -15887152 + MIR3 SINE MIR 41 208 0 2074 124 3 0 chrY 8826425 8826716 -15886363 - AluSg SINE Alu -18 292 1 1325 187 56 4 chrY 8826720 8826987 -15886092 - AluJo SINE Alu -18 294 14 1326 172 135 11 chrY 8827879 8828146 -15884933 - AluSg SINE Alu 0 300 1 215 266 29 54 chrY 8828156 8828253 -15884826 - MIR SINE MIR -129 79 12 21 57 0 0 chrY 8828486 8828521 -15884558 + AT_rich Low_complexity Low_complexity 1 35 0 1326 147 9 0 chrY 8828744 8828955 -15884124 + AluSg/x SINE Alu 97 309 -1 61 46 0 39 chrY 8829060 8829190 -15883889 + AT_rich Low_complexity Low_complexity 1 125 0 2127 115 3 0 chrY 8829380 8829676 -15883403 - AluY SINE Alu -14 297 1 1584 191 0 11 chrY 8830371 8830654 -15882425 - AluSx SINE Alu -28 284 5 24 32 0 0 chrY 8830776 8830807 -15882272 + AT_rich Low_complexity Low_complexity 1 31 0 2183 78 3 19 chrY 8831577 8831884 -15881195 - AluY SINE Alu -9 302 1 1741 151 4 0 chrY 8831887 8832165 -15880914 - AluSx SINE Alu -5 307 29 832 228 147 9 chrY 8832265 8832497 -15880582 + Tigger7 DNA MER2_type 1 264 -469 230 225 112 22 chrY 8832500 8832589 -15880490 + Tigger7 DNA MER2_type 2395 2491 0 27 0 0 0 chrY 8832589 8832616 -15880463 + AT_rich Low_complexity Low_complexity 1 27 0 25 0 0 0 chrY 8832895 8832920 -15880159 + AT_rich Low_complexity Low_complexity 1 25 0 34 65 0 0 chrY 8832995 8833057 -15880022 + AT_rich Low_complexity Low_complexity 1 62 0 23 33 0 0 chrY 8833453 8833483 -15879596 + AT_rich Low_complexity Low_complexity 1 30 0 1550 176 3 30 chrY 8834281 8834576 -15878503 + AluJb SINE Alu 1 287 -25 671 230 224 13 chrY 8834595 8834860 -15878219 + L1MB5 LINE L1 3954 4296 -1850 249 119 0 0 chrY 8834860 8834902 -15878177 + (CA)n Simple_repeat Simple_repeat 1 42 0 671 230 224 13 chrY 8834902 8834949 -15878130 + L1MB5 LINE L1 4296 4332 -1814 957 226 25 69 chrY 8834949 8835224 -15877855 + Tigger7 DNA MER2_type 4 266 -284 239 263 40 53 chrY 8835236 8835312 -15877767 + Tigger7 DNA MER2_type 2402 2476 -11 2767 246 95 11 chrY 8835367 8837007 -15876072 + L1MB5 LINE L1 4341 6130 -44 579 244 0 15 chrY 8837021 8837152 -15875927 + AluJo SINE Alu 37 165 -147 407 119 0 0 chrY 8837304 8837363 -15875716 - AluJ/FLAM SINE Alu -207 95 37 871 195 126 0 chrY 8837365 8837596 -15875483 - L1MB4 LINE L1 -39 6141 5882 1710 100 0 4 chrY 8837616 8837845 -15875234 - AluSc SINE Alu -81 228 1 2566 257 110 67 chrY 8838152 8840057 -15873022 - L1MC3 LINE L1 -751 5395 4845 393 351 73 11 chrY 8840058 8840249 -15872830 + L1MDb LINE L1 73 275 -6134 686 247 82 46 chrY 8840333 8840945 -15872134 + L1MDb LINE L1 659 1504 -4902 2021 133 3 0 chrY 8840945 8841247 -15871832 + AluSq SINE Alu 1 303 -10 686 247 82 46 chrY 8841247 8841293 -15871786 + L1MDb LINE L1 1504 1547 -4859 590 254 207 17 chrY 8841296 8841823 -15871256 + L1MDb LINE L1 1662 2288 -4118 24 0 0 0 chrY 8841983 8842007 -15871072 + AT_rich Low_complexity Low_complexity 1 24 0 1939 155 3 0 chrY 8842007 8842297 -15870782 + AluSx SINE Alu 1 291 -21 936 206 41 10 chrY 8842305 8842499 -15870580 - AluSx SINE Alu -108 204 5 410 62 0 31 chrY 8842542 8842607 -15870472 + AluJ/FLAM SINE Alu 1 63 -249 240 299 63 17 chrY 8842659 8842833 -15870246 + L1M4 LINE L1 912 1093 -5449 1769 240 123 33 chrY 8842845 8844771 -15868308 + L1MCa LINE L1 12 2264 -4162 1718 144 49 0 chrY 8844771 8845035 -15868044 + AluSq SINE Alu 3 279 -34 1769 240 123 33 chrY 8845035 8845198 -15867881 + L1MCa LINE L1 2264 2411 -4015 1359 220 70 3 chrY 8845199 8845513 -15867566 + Tigger3(Golem) DNA MER2_type 2 336 -2693 26 0 0 0 chrY 8845518 8845544 -15867535 + AT_rich Low_complexity Low_complexity 1 26 0 395 273 99 47 chrY 8845599 8845840 -15867239 + L1MCa LINE L1 2626 2877 -3549 696 289 12 0 chrY 8845863 8846036 -15867043 + MER8 DNA MER2_type 2 176 -63 522 225 40 72 chrY 8846052 8846274 -15866805 + L1MCa LINE L1 2946 3160 -3266 1895 268 90 24 chrY 8846304 8846533 -15866546 + L1MCa LINE L1 3088 3300 -3126 1787 150 44 0 chrY 8846533 8846827 -15866252 + AluSx SINE Alu 1 307 -5 1861 113 57 3 chrY 8846829 8847111 -15865968 + AluY SINE Alu 1 297 -14 1895 268 90 24 chrY 8847111 8847899 -15865180 + L1MCa LINE L1 3300 4176 -2250 1567 184 0 0 chrY 8847917 8848183 -15864896 + AluSx SINE Alu 23 288 -24 595 243 77 48 chrY 8848194 8848364 -15864715 + L1MCa LINE L1 4437 4601 -1825 1842 153 10 10 chrY 8848364 8848659 -15864420 - AluSp SINE Alu -18 295 1 595 243 77 48 chrY 8848659 8848863 -15864216 + L1MCa LINE L1 4601 4822 -1604 947 259 92 0 chrY 8848970 8849221 -15863858 - AluJo SINE Alu -38 274 1 741 187 0 0 chrY 8849241 8849364 -15863715 - FLAM_C SINE Alu -9 124 2 2822 3 0 0 chrY 8849607 8849914 -15863165 - AluYa5 SINE Alu -4 307 1 1429 146 9 89 chrY 8850204 8850519 -15862560 + AluSx SINE Alu 1 290 -12 30 0 0 0 chrY 8851010 8851040 -15862039 + AT_rich Low_complexity Low_complexity 1 30 0 1994 148 0 0 chrY 8851042 8851340 -15861739 + AluSq SINE Alu 1 298 -15 4742 224 84 30 chrY 8851862 8852199 -15860880 - L1M2 LINE L1 -499 5813 5496 1729 139 92 14 chrY 8852199 8852545 -15860534 + THE1C LTR MaLR 1 373 -2 4742 224 84 30 chrY 8852545 8854166 -15858913 - L1M2 LINE L1 -816 5496 3742 2362 132 11 19 chrY 8854929 8855293 -15857786 + THE1C LTR MaLR 15 375 0 1168 221 37 27 chrY 8855404 8855702 -15857377 + AluJo SINE Alu 1 301 -1 895 86 78 0 chrY 8855849 8855977 -15857102 - MER85 DNA T2_type 0 139 2 1121 235 76 0 chrY 8856375 8856652 -15856427 - AluJo SINE Alu -3 299 2 1252 180 69 59 chrY 8858880 8859169 -15853910 + AluJb SINE Alu 7 298 -14 297 0 0 0 chrY 8859174 8859207 -15853872 + (CA)n Simple_repeat Simple_repeat 2 34 0 1997 127 13 16 chrY 8859418 8859726 -15853353 - AluSx SINE Alu -5 307 1 22 35 0 0 chrY 8860720 8860749 -15852330 + AT_rich Low_complexity Low_complexity 1 29 0 1158 215 106 11 chrY 8861852 8862388 -15850691 + L1MB4 LINE L1 4900 5488 -696 563 209 45 47 chrY 8862459 8862631 -15850448 + L1P4 LINE L1 5655 5827 -341 599 178 0 0 chrY 8862632 8862739 -15850340 + FRAM SINE Alu 62 168 -8 1048 238 102 9 chrY 8862739 8863062 -15850017 + L1MB4 LINE L1 5823 6175 -5 612 225 93 24 chrY 8863236 8863531 -15849548 + MER34B LTR ERV1 1 361 -204 2469 133 141 24 chrY 8863585 8864087 -15848992 + LTR24B LTR ERV1 9 569 -7 240 194 30 15 chrY 8864100 8864167 -15848912 + MER34B LTR ERV1 427 494 -71 225 149 391 35 chrY 8864291 8864378 -15848701 + L1MD2 LINE L1 6191 6308 -51 1030 271 112 6 chrY 8864498 8864856 -15848223 + MSTD LTR MaLR 1 396 0 2129 125 17 0 chrY 8865110 8865407 -15847672 + AluSq SINE Alu 3 304 -9 462 235 0 20 chrY 8866592 8866694 -15846385 - Tigger7 DNA MER2_type 0 2587 2488 828 151 184 110 chrY 8866696 8866813 -15846266 - Tigger7 DNA MER2_type -470 263 156 2135 127 0 0 chrY 8866813 8867104 -15845975 - AluSc SINE Alu -16 293 3 828 151 184 110 chrY 8867104 8867231 -15845848 - Tigger7 DNA MER2_type -577 156 1 762 223 32 0 chrY 8867276 8867433 -15845646 + FAM SINE Alu 1 162 -13 1851 180 74 2 chrY 8868137 8868571 -15844508 + L1MA6 LINE L1 5324 5788 -503 421 225 8 33 chrY 8868661 8868781 -15844298 + MER6 DNA MER2_type 25 862 -3 1832 189 75 31 chrY 8868788 8869239 -15843840 + L1MA6 LINE L1 5830 6300 0 31 0 0 0 chrY 8869239 8869270 -15843809 + AT_rich Low_complexity Low_complexity 1 31 0 270 259 17 9 chrY 8870202 8870318 -15842761 + (TA)n Simple_repeat Simple_repeat 1 117 0 286 205 154 0 chrY 8870318 8870435 -15842644 - L1MA9 LINE L1 -25 6287 6153 233 271 141 0 chrY 8871881 8871966 -15841113 + MLT1L LTR MaLR 450 546 -69 2158 238 32 30 chrY 8873032 8873634 -15839445 + MER77 LTR ERV1 3 605 0 1377 211 0 4 chrY 8875024 8875285 -15837794 - AluJo SINE Alu -32 280 21 415 293 9 48 chrY 8875342 8875571 -15837508 - L1M4 LINE L1 -1180 4966 4747 1851 252 74 95 chrY 8876422 8877517 -15835562 + MER52A LTR ERV1 684 1755 0 2295 164 31 11 chrY 8878562 8879007 -15834072 - Tigger4(Zombi) DNA MER2_type 0 2731 2278 1377 212 55 13 chrY 8879022 8879329 -15833750 + MER7A DNA MER2_type 29 346 0 609 87 0 95 chrY 8879329 8879455 -15833624 - Tigger4(Zombi) DNA MER2_type -462 2269 2156 910 174 0 0 chrY 8879461 8879610 -15833469 - AluSg/x SINE Alu -23 289 141 4875 168 80 6 chrY 8879652 8880598 -15832481 - Tigger4(Zombi) DNA MER2_type -647 2084 1069 3634 183 95 12 chrY 8880594 8881365 -15831714 - Tigger4(Zombi) DNA MER2_type -1892 839 5 * 624 168 7 87 chrY 8881364 8881435 -15831644 - Tigger4(Zombi) DNA MER2_type -1920 811 757 * 5541 52 7 3 chrY 8881435 8882132 -15830947 - L1PA5 LINE L1 -6 6148 5449 624 168 7 87 chrY 8882132 8882209 -15830870 - Tigger4(Zombi) DNA MER2_type -1974 757 675 2978 188 96 3 chrY 8882330 8882964 -15830115 - MER54A LTR ERVL 0 901 209 712 194 65 0 chrY 8882966 8883105 -15829974 - MER47A DNA MER2_type 0 366 219 1089 204 27 5 chrY 8883105 8883325 -15829754 - AluJb SINE Alu -1 311 87 1055 215 14 9 chrY 8883330 8883553 -15829526 - MER47A DNA MER2_type -141 225 2 707 264 35 30 chrY 8883553 8883748 -15829331 - MER54A LTR ERVL -692 209 14 1518 203 45 13 chrY 8883815 8884189 -15828890 + L1P LINE L1 4675 5060 -1086 3265 156 61 75 chrY 8884190 8885430 -15827649 + L1PA14 LINE L1 4927 6144 -17 231 345 22 29 chrY 8886202 8886341 -15826738 + L1MEc LINE L1 266 403 -5993 326 290 179 28 chrY 8886569 8886821 -15826258 + L1MDa LINE L1 137 426 -6114 1929 151 0 0 chrY 8887640 8887949 -15825130 + AluSg SINE Alu 1 309 0 1859 136 28 0 chrY 8887958 8888244 -15824835 + AluY SINE Alu 1 294 -17 400 238 12 0 chrY 8888250 8888334 -15824745 + FLAM_A SINE Alu 48 121 -12 568 207 45 29 chrY 8888451 8888691 -15824388 + L1MC/D LINE L1 5194 5436 -743 309 347 32 23 chrY 8888764 8888980 -15824099 + L1M3b LINE L1 1451 1668 -5828 1725 269 90 26 chrY 8889380 8891338 -15821741 + L1M3b LINE L1 2114 4058 -3507 5719 232 38 6 chrY 8891343 8893039 -15820040 - L1P5 LINE L1 -617 5539 3794 1451 185 120 95 chrY 8893052 8893587 -15819492 + LTR10A LTR ERV1 1 548 -61 2212 227 19 19 chrY 8893599 8894168 -15818911 - L1 LINE L1 -2361 3785 3217 1114 199 30 56 chrY 8894184 8894451 -15818628 + AluJb SINE Alu 12 271 -41 1950 229 73 30 chrY 8894488 8895794 -15817285 + L1M3b LINE L1 4621 6108 -1457 5274 273 59 15 chrY 8895796 8897711 -15815368 + L1M2 LINE L1 899 2898 -3951 1520 173 12 0 chrY 8897731 8897980 -15815099 - AluSx SINE Alu -25 287 36 1922 243 66 18 chrY 8898000 8898740 -15814339 + L1M2 LINE L1 2887 3662 -3186 3844 270 56 60 chrY 8899212 8900482 -15812597 + HERV15 LTR ERV1 26 1125 -7301 333 0 0 0 chrY 8900482 8900519 -15812560 + (CA)n Simple_repeat Simple_repeat 2 38 0 3844 270 56 60 chrY 8900519 8901409 -15811670 + HERV15 LTR ERV1 1125 2017 -6409 * 4006 297 25 30 chrY 8901389 8902741 -15810338 + HERV3 LTR ERV1 3492 4836 -3590 2972 290 39 18 chrY 8902768 8903755 -15809324 + HERV3 LTR ERV1 5165 6171 -2255 201 196 0 0 chrY 8903782 8903828 -15809251 + (TAAG)n Simple_repeat Simple_repeat 1 46 0 4070 296 73 59 chrY 8903829 8904698 -15808381 + HERV3 LTR ERV1 6153 7008 -1418 186 71 0 0 chrY 8904698 8904726 -15808353 + (TTTTA)n Simple_repeat Simple_repeat 5 32 0 4070 296 73 59 chrY 8904726 8906035 -15807044 + HERV3 LTR ERV1 7008 8363 -63 202 122 0 61 chrY 8906637 8906686 -15806393 + (TAAAA)n Simple_repeat Simple_repeat 3 48 0 689 248 64 32 chrY 8907135 8907417 -15805662 + L1M2 LINE L1 3584 3874 -2974 680 131 0 0 chrY 8907508 8907607 -15805472 + AluS SINE Alu 1 99 -213 650 184 49 5 chrY 8907619 8907804 -15805275 + L1M2 LINE L1 3951 4143 -2705 816 182 20 5 chrY 8907809 8908012 -15805067 + L1M2 LINE L1 4039 4244 -2604 581 219 58 34 chrY 8907987 8908192 -15804887 + L1PB4 LINE L1 6649 6858 0 * 478 271 109 44 chrY 8908235 8908392 -15804687 + L1M4 LINE L1 2554 2699 -3447 1956 142 7 3 chrY 8908392 8908694 -15804385 + AluSc SINE Alu 3 305 -4 478 271 109 44 chrY 8908694 8908759 -15804320 + L1M4 LINE L1 2699 2758 -3388 342 0 0 0 chrY 8908759 8908797 -15804282 + (TA)n Simple_repeat Simple_repeat 2 39 0 478 271 109 44 chrY 8908797 8909142 -15803937 + L1M4 LINE L1 2758 3159 -2987 1271 248 13 6 chrY 8909145 8909460 -15803619 - L1P LINE L1 -1927 4219 3903 2391 104 42 13 chrY 8909462 8909848 -15803231 + L1PA15 LINE L1 5769 6165 0 507 189 42 0 chrY 8909966 8910061 -15803018 + AluJ/FLAM SINE Alu 1 99 -213 705 56 0 0 chrY 8910066 8910156 -15802923 + (TAGA)n Simple_repeat Simple_repeat 2 91 0 545 283 119 8 chrY 8910188 8910439 -15802640 + L1M4 LINE L1 4519 4797 -1349 1977 94 0 30 chrY 8910479 8910778 -15802301 - L1PA7 LINE L1 0 6154 5865 984 212 65 23 chrY 8910796 8911102 -15801977 + L1MC3 LINE L1 7467 7785 0 753 257 76 9 chrY 8911188 8911398 -15801681 + L1M3a LINE L1 6 229 -5726 823 219 159 39 chrY 8911499 8911968 -15801111 - L1M4 LINE L1 -514 5664 5141 725 236 75 28 chrY 8911961 8912215 -15800864 + L1MB8 LINE L1 5913 6178 0 * 1000 305 94 37 chrY 8913750 8914057 -15799022 + L1M4b LINE L1 103 391 -6468 2111 128 0 0 chrY 8914057 8914355 -15798724 + AluY SINE Alu 1 298 -13 1000 305 94 37 chrY 8914355 8914863 -15798216 + L1M4b LINE L1 391 965 -5894 486 293 177 41 chrY 8914958 8915449 -15797630 + L1MDa LINE L1 169 726 -5814 1666 170 33 14 chrY 8915601 8915877 -15797202 + AluSx SINE Alu 1 281 -31 436 291 59 16 chrY 8915972 8916329 -15796750 + L1MDa LINE L1 1174 1557 -4983 423 259 29 14 chrY 8916397 8916536 -15796543 + L1MB5 LINE L1 285 425 -6424 1491 235 96 25 chrY 8916538 8917387 -15795692 + L1MB5 LINE L1 5378 6299 -583 1045 83 0 0 chrY 8917455 8917587 -15795492 + AluSq/x SINE Alu 2 133 -179 975 164 0 0 chrY 8917606 8917752 -15795327 + AluSp SINE Alu 121 266 -47 960 238 84 20 chrY 8917767 8918111 -15794968 + L1MB5 LINE L1 6354 6719 -157 1842 168 13 0 chrY 8918170 8918474 -15794605 + AluSq SINE Alu 1 308 -5 733 227 91 31 chrY 8918474 8918826 -15794253 + L1MB4 LINE L1 5808 6180 0 1860 229 43 7 chrY 8919116 8919553 -15793526 - MER88 LTR ERVL -11 453 1 432 276 35 58 chrY 8919586 8919843 -15793236 + HAL1 LINE L1 1461 1711 -796 1165 259 24 10 chrY 8919864 8920158 -15792921 + AluJb SINE Alu 1 298 -4 402 232 119 55 chrY 8920683 8921028 -15792051 + L1ME LINE L1 4235 4601 -1545 2122 202 63 13 chrY 8921069 8921623 -15791456 + L1MC3 LINE L1 7138 7719 -66 4098 27 0 0 chrY 8921675 8922283 -15790796 - L1PA4 LINE L1 -398 5757 5150 3239 45 17 0 chrY 8922283 8922684 -15790395 + L1PA4 LINE L1 5742 6152 -3 1566 220 3 0 chrY 8923934 8924230 -15788849 + AluJb SINE Alu 1 297 -15 928 179 127 11 chrY 8924231 8924499 -15788580 + L1MA8 LINE L1 5989 6287 -4 300 161 36 36 chrY 8924660 8924772 -15788307 + GA-rich Low_complexity Low_complexity 3 114 0 324 300 15 54 chrY 8924846 8924976 -15788103 + L1ME LINE L1 5481 5605 -516 1663 122 26 82 chrY 8925145 8925448 -15787631 - AluSx SINE Alu -26 286 1 1664 189 65 21 chrY 8925820 8926357 -15786722 - L1MB5 LINE L1 0 6171 5589 225 94 0 0 chrY 8926357 8926389 -15786690 + (TA)n Simple_repeat Simple_repeat 2 33 0 5169 62 1 1 chrY 8926389 8927045 -15786034 - L1PA5 LINE L1 -9 6145 5490 604 272 88 33 chrY 8927724 8927996 -15785083 - MER82 DNA MER2_type -10 643 357 1879 149 0 55 chrY 8928004 8928313 -15784766 + AluSx SINE Alu 1 292 -20 1970 109 10 33 chrY 8928313 8928615 -15784464 + AluY SINE Alu 1 296 -15 194 136 0 51 chrY 8928618 8928677 -15784402 + (TAAAA)n Simple_repeat Simple_repeat 5 60 0 1279 195 3 65 chrY 8928703 8929042 -15784037 - MER82 DNA MER2_type -301 352 35 1250 186 40 90 chrY 8929171 8929525 -15783554 - MER70B LTR ERVL -223 355 20 1183 97 0 0 chrY 8929691 8929856 -15783223 + L1PA11 LINE L1 6009 6173 -1 1940 142 3 3 chrY 8930424 8930713 -15782366 - AluSg SINE Alu -16 294 6 1940 124 19 32 chrY 8931002 8931317 -15781762 + AluSx SINE Alu 2 312 0 2089 130 10 0 chrY 8931505 8931804 -15781275 + AluSx SINE Alu 1 302 -10 2196 84 7 17 chrY 8931908 8932206 -15780873 + AluY SINE Alu 1 295 -16 2196 113 10 0 chrY 8932728 8933019 -15780060 - AluSx SINE Alu -14 298 5 192 97 0 0 chrY 8934170 8934201 -15778878 + (TAA)n Simple_repeat Simple_repeat 1 31 0 322 235 0 0 chrY 8934390 8934458 -15778621 + MER33 DNA MER1_type 17 84 -240 325 254 36 36 chrY 8934715 8934880 -15778199 + L1ME1 LINE L1 5811 5975 -191 1825 126 0 11 chrY 8935079 8935350 -15777729 + AluSc SINE Alu 25 292 -17 253 274 60 60 chrY 8935464 8935665 -15777414 + L1M4b LINE L1 1330 1530 -5329 421 200 59 0 chrY 8935678 8935763 -15777316 + AluJb SINE Alu 207 296 -16 2520 161 39 9 chrY 8935763 8936328 -15776751 + L1PB4 LINE L1 5322 5903 -253 1313 133 0 5 chrY 8936491 8936686 -15776393 + AluSg SINE Alu 1 194 -116 986 154 0 0 chrY 8936693 8936842 -15776237 + AluSg/x SINE Alu 156 304 -6 447 280 59 0 chrY 8937137 8937323 -15775756 + L1M4b LINE L1 2228 2424 -4535 520 197 38 154 chrY 8937420 8937482 -15775597 + L1M4b LINE L1 2669 2737 -4220 1779 140 38 7 chrY 8937482 8937775 -15775304 + AluSq SINE Alu 1 302 -11 520 197 38 154 chrY 8937775 8938206 -15774873 + L1M4b LINE L1 2737 3105 -3852 898 225 0 0 chrY 8938244 8938413 -15774666 - AluJb SINE Alu -143 169 1 2051 141 0 3 chrY 8939259 8939556 -15773523 + AluSq SINE Alu 1 296 -17 22 35 0 0 chrY 8940243 8940272 -15772807 + AT_rich Low_complexity Low_complexity 1 29 0 1111 214 102 20 chrY 8940663 8940967 -15772112 + MSTD LTR MaLR 1 329 -67 182 118 29 0 chrY 8941467 8941501 -15771578 + (TA)n Simple_repeat Simple_repeat 2 36 0 26 0 0 0 chrY 8941934 8941960 -15771119 + AT_rich Low_complexity Low_complexity 1 26 0 198 0 0 0 chrY 8944185 8944207 -15768872 + (A)n Simple_repeat Simple_repeat 1 22 0 2959 116 116 36 chrY 8944433 8944627 -15768452 - MER4A LTR ERV1 -2 598 421 2274 105 3 0 chrY 8944627 8944932 -15768147 + AluSp SINE Alu 1 306 -7 2959 116 116 36 chrY 8944932 8945291 -15767788 - MER4A LTR ERV1 -179 421 1 226 232 143 0 chrY 8946043 8946099 -15766980 + MIR SINE MIR 49 112 -150 27 0 0 0 chrY 8946392 8946419 -15766660 + AT_rich Low_complexity Low_complexity 1 27 0 6155 102 17 2 chrY 8946552 8947243 -15765836 - L1PA8 LINE L1 -2 6170 5478 2099 85 32 3 chrY 8947243 8947525 -15765554 - AluY SINE Alu -21 290 1 6155 102 17 2 chrY 8947525 8948093 -15764986 - L1PA8 LINE L1 -694 5478 4920 21137 161 15 20 chrY 8948094 8952593 -15760486 - L1M2 LINE L1 -1151 5697 1178 918 215 187 24 chrY 8952617 8953068 -15760011 + LTR61 LTR ERV1 16 595 0 4530 240 24 44 chrY 8953068 8954272 -15758807 - L1M2 LINE L1 -5668 1181 2 814 216 93 0 chrY 8954395 8954599 -15758480 - L1M2 LINE L1 -6242 607 385 29 28 0 0 chrY 8954654 8954690 -15758389 + AT_rich Low_complexity Low_complexity 1 36 0 1941 155 19 7 chrY 8955712 8956021 -15757058 + AluSq SINE Alu 1 313 0 1331 205 13 0 chrY 8956137 8956371 -15756708 + AluJo SINE Alu 1 237 -75 36 23 0 0 chrY 8956373 8956416 -15756663 + AT_rich Low_complexity Low_complexity 1 43 0 1183 177 58 13 chrY 8956590 8956816 -15756263 - AluJo SINE Alu -19 293 58 1108 252 0 0 chrY 8956882 8957120 -15755959 - AluJb SINE Alu -74 238 1 3748 75 21 0 chrY 8957139 8957619 -15755460 - LTR2B LTR ERV1 0 490 1 1291 150 5 0 chrY 8957823 8958036 -15755043 + L1P3 LINE L1 5 218 -6243 3544 120 21 7 chrY 8958037 8958655 -15754424 + L1P LINE L1 2518 3144 -3002 400 176 0 0 chrY 8958659 8958733 -15754346 + L1P LINE L1 4227 4300 -1846 618 298 51 28 chrY 8958785 8959040 -15754039 - MLT2F LTR ERVL -217 446 186 1627 151 0 75 chrY 8959407 8959486 -15753593 + MER41B LTR ERV1 315 398 -237 2381 94 7 0 chrY 8959486 8959794 -15753285 - AluSp SINE Alu -3 310 1 1627 151 0 75 chrY 8959794 8960059 -15753020 + MER41B LTR ERV1 398 633 -2 568 254 0 0 chrY 8960118 8960228 -15752851 - FLAM_A SINE Alu -30 112 3 437 178 0 0 chrY 8960787 8960860 -15752219 - MSTC LTR MaLR -173 255 183 997 153 0 0 chrY 8960866 8961016 -15752063 + AluSg/x SINE Alu 156 305 -7 802 217 33 0 chrY 8961016 8961200 -15751879 - MSTC LTR MaLR -238 190 1 2705 265 85 76 chrY 8961238 8962853 -15750226 - MSTC-int LTR MaLR -25 1710 1 1419 240 149 13 chrY 8962853 8963228 -15749851 - MSTC LTR MaLR 0 428 3 1852 137 14 11 chrY 8963419 8963697 -15749382 + AluSq SINE Alu 2 280 -33 189 0 0 0 chrY 8963697 8963718 -15749361 + (CAAAA)n Simple_repeat Simple_repeat 4 24 0 198 103 0 0 chrY 8963778 8963807 -15749272 + (TA)n Simple_repeat Simple_repeat 1 29 0 307 219 0 0 chrY 8963814 8963878 -15749201 - L1MC4 LINE L1 -1339 6703 6640 1909 149 0 3 chrY 8963891 8964180 -15748899 + AluSq SINE Alu 1 288 -25 593 258 127 27 chrY 8964440 8964700 -15748379 + L1M4 LINE L1 3916 4201 -1945 819 205 82 0 chrY 8964712 8964907 -15748172 + L1M2 LINE L1 5351 5561 -730 4621 267 54 22 chrY 8964923 8966416 -15746663 + L1PBa LINE L1 3 1543 -5320 198 350 136 0 chrY 9066640 9066743 -15646336 + L2 LINE L2 3109 3225 -47 2064 119 20 0 chrY 9066984 9067278 -15645801 + AluSc SINE Alu 1 300 -9 945 183 24 0 chrY 9067287 9067456 -15645623 + FAM SINE Alu 1 173 -2 2063 131 6 29 chrY 9068165 9068508 -15644571 - MER1B DNA MER1_type -2 335 1 1731 130 54 11 chrY 9068900 9069177 -15643902 - AluSg SINE Alu -21 289 1 1653 224 57 28 chrY 9069178 9069673 -15643406 - L1M4 LINE L1 -1669 4477 3969 221 83 28 0 chrY 9069673 9069709 -15643370 + (TCCCC)n Simple_repeat Simple_repeat 5 41 0 2521 74 0 6 chrY 9069718 9070030 -15643049 - AluY SINE Alu -1 310 1 1534 153 12 20 chrY 9070058 9070306 -15642773 - AluJo SINE Alu -66 246 1 891 225 71 55 chrY 9070307 9070618 -15642461 - L1M4 LINE L1 -2358 3788 3473 252 0 0 0 chrY 9070661 9070689 -15642390 + (TA)n Simple_repeat Simple_repeat 1 28 0 266 234 40 57 chrY 9070728 9070852 -15642227 - AluSc SINE Alu -29 270 149 309 287 57 51 chrY 9071343 9071541 -15641538 + MIR SINE MIR 2 191 -63 964 202 0 0 chrY 9072093 9072261 -15640818 + AluJb SINE Alu 134 301 -11 2290 72 0 39 chrY 9072791 9073098 -15639981 + AluY SINE Alu 1 295 -16 252 0 0 0 chrY 9074132 9074160 -15638919 + (A)n Simple_repeat Simple_repeat 1 28 0 444 19 0 0 chrY 9074219 9074272 -15638807 + (TG)n Simple_repeat Simple_repeat 2 54 0 198 0 0 0 chrY 9076242 9076264 -15636815 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 604 163 141 22 chrY 9078079 9078214 -15634865 + L1MD2 LINE L1 6207 6357 -2 1548 184 88 0 chrY 9078309 9078629 -15634450 - MER7A DNA MER2_type 0 346 1 1533 176 3 50 chrY 9078908 9079231 -15633848 + AluJb SINE Alu 1 308 -4 1606 93 42 13 chrY 9079704 9079940 -15633139 + AluSq SINE Alu 1 243 -70 184 260 0 0 chrY 9081310 9081360 -15631719 - L2 LINE L2 -6 3266 3217 200 224 104 30 chrY 9081363 9081398 -15631681 + MIR SINE MIR 72 103 -105 2415 75 0 0 chrY 9081398 9081693 -15631386 - AluSc SINE Alu -14 295 1 200 224 104 30 chrY 9081693 9081724 -15631355 + MIR SINE MIR 103 143 -65 851 142 54 14 chrY 9081933 9082081 -15630998 + FRAM SINE Alu 1 154 -22 379 323 145 0 chrY 9082281 9082563 -15630516 + L1MC4a LINE L1 5273 5595 -2213 903 205 0 6 chrY 9082565 9082731 -15630348 + FRAM SINE Alu 1 159 -17 2108 132 0 0 chrY 9082739 9083026 -15630053 + AluSx SINE Alu 1 287 -25 318 267 148 5 chrY 9083104 9083314 -15629765 + L1MC4a LINE L1 5672 5911 -1897 858 123 0 0 chrY 9083349 9083471 -15629608 + L1M2 LINE L1 3 124 -6725 433 326 158 20 chrY 9083617 9083921 -15629158 - L3 LINE CR1 -896 681 336 480 129 439 0 chrY 9086919 9086997 -15626082 + MER3 DNA MER1_type 20 63 -146 2349 101 3 0 chrY 9086997 9087305 -15625774 - AluSq SINE Alu -4 309 1 480 129 439 0 chrY 9087305 9087358 -15625721 + MER3 DNA MER1_type 63 209 0 230 192 19 0 chrY 9087397 9087449 -15625630 + L2 LINE L2 3261 3313 0 351 0 0 0 chrY 9088287 9088326 -15624753 + (A)n Simple_repeat Simple_repeat 1 39 0 281 250 50 25 chrY 9088735 9088815 -15624264 - L2 LINE L2 -38 3234 3153 455 245 122 0 chrY 9089623 9089770 -15623309 - MER104 DNA Tc2 -15 165 1 299 286 15 53 chrY 9089840 9089973 -15623106 - MIR SINE MIR -72 190 63 224 350 79 20 chrY 9090837 9091040 -15622039 + L3b LINE CR1 1117 1331 -252 1797 295 123 25 chrY 9091473 9092518 -15620561 + L2 LINE L2 1587 2734 -580 367 247 89 100 chrY 9092879 9093397 -15619682 + L1MEd LINE L1 686 1197 -4922 2442 41 49 8 chrY 9093455 9093820 -15619259 - L1PA4 LINE L1 0 6155 5776 2388 228 86 30 chrY 9093920 9094048 -15619031 - L2 LINE L2 -838 2476 2357 2195 114 7 7 chrY 9094048 9094354 -15618725 - AluSx SINE Alu -6 306 1 2388 228 86 30 chrY 9094354 9094996 -15618083 - L2 LINE L2 -957 2357 1663 467 221 93 83 chrY 9095064 9095337 -15617742 + MLT1J2 LTR MaLR 85 370 -55 698 142 13 184 chrY 9095337 9095570 -15617509 + 7SK RNA RNA 1 193 0 467 221 93 83 chrY 9095570 9095619 -15617460 + MLT1J2 LTR MaLR 370 417 -8 336 219 124 0 chrY 9095626 9095731 -15617348 - L2 LINE L2 -1648 1666 1549 215 191 21 0 chrY 9095750 9095797 -15617282 + MIR3 SINE MIR 127 174 -34 235 333 111 7 chrY 9099644 9099797 -15613282 + L3b LINE CR1 1276 1444 -139 225 132 0 0 chrY 9099810 9099848 -15613231 + (TG)n Simple_repeat Simple_repeat 1 38 0 541 288 31 31 chrY 9100501 9100723 -15612356 + L3 LINE CR1 1308 1529 -48 1291 194 12 10 chrY 9102088 9102386 -15610693 - L1MB2 LINE L1 -34 6134 5846 465 331 115 13 chrY 9103544 9103858 -15609221 + L2 LINE L2 2967 3312 -1 697 297 84 7 chrY 9103860 9104156 -15608923 + L2 LINE L2 2994 3312 -1 1223 254 56 21 chrY 9104424 9104802 -15608277 - L1MC4 LINE L1 -130 7912 7522 393 219 66 147 chrY 9104861 9105289 -15607790 - L1MC4a LINE L1 -1558 6250 5868 2204 108 3 34 chrY 9105289 9105612 -15607467 + AluSp SINE Alu 1 313 0 393 219 66 147 chrY 9105612 9105695 -15607384 - L1MC4a LINE L1 -1940 5868 5780 1782 171 43 29 chrY 9105802 9106153 -15606926 + MLT1B LTR MaLR 33 388 -2 312 252 114 48 chrY 9107705 9107915 -15605164 - L1ME4a LINE L1 -2 6119 5896 302 265 115 70 chrY 9107964 9108164 -15604915 - L1MC4 LINE L1 -312 7730 7522 1955 138 3 3 chrY 9110450 9110746 -15602333 + AluJb SINE Alu 1 296 -16 2387 53 7 20 chrY 9111086 9111389 -15601690 + AluY SINE Alu 1 299 -12 631 281 157 38 chrY 9112347 9112817 -15600262 - L1ME4a LINE L1 -2028 5780 5255 3560 172 19 61 chrY 9113216 9113985 -15599094 - L1MB7 LINE L1 -19 6165 5429 186 133 0 0 chrY 9114240 9114270 -15598809 + (GA)n Simple_repeat Simple_repeat 1 30 0 224 276 33 91 chrY 9114672 9114826 -15598253 - MIR SINE MIR -76 186 43 34 79 0 0 chrY 9115460 9115536 -15597543 + AT_rich Low_complexity Low_complexity 1 76 0 915 139 0 0 chrY 9115826 9115955 -15597124 + FLAM_C SINE Alu 2 130 -3 1495 196 39 6 chrY 9117950 9118262 -15594817 + MER33 DNA MER1_type 3 324 0 2072 136 3 0 chrY 9118624 9118925 -15594154 + AluSx SINE Alu 1 302 -10 1591 133 39 142 chrY 9118932 9119269 -15593810 + AluJb SINE Alu 1 302 0 1643 214 74 53 chrY 9119424 9119882 -15593197 - MLT1F LTR MaLR -9 533 60 406 283 80 0 chrY 9119944 9120057 -15593022 - MIR SINE MIR -62 146 25 207 69 0 0 chrY 9120940 9120969 -15592110 + (TG)n Simple_repeat Simple_repeat 2 30 0 1999 141 7 3 chrY 9121091 9121381 -15591698 + AluSx SINE Alu 1 291 -21 653 249 122 5 chrY 9121387 9121608 -15591471 - MIR SINE MIR -3 259 13 186 43 0 0 chrY 9122184 9122207 -15590872 + (TTG)n Simple_repeat Simple_repeat 2 24 0 459 244 108 131 chrY 9122390 9122478 -15590601 + L2 LINE L2 2926 3015 -257 872 150 0 0 chrY 9122478 9122598 -15590481 + FLAM_C SINE Alu 1 120 -13 459 244 108 131 chrY 9122598 9122853 -15590226 + L2 LINE L2 3015 3261 -11 24 77 0 0 chrY 9123891 9123943 -15589136 + AT_rich Low_complexity Low_complexity 1 52 0 2211 117 7 3 chrY 9124241 9124540 -15588539 - AluSx SINE Alu -12 300 1 1787 148 6 46 chrY 9124890 9125214 -15587865 - AluJb SINE Alu -1 311 1 2530 132 40 2 chrY 9125215 9125610 -15587469 - L1MC1 LINE L1 -10 6323 5914 306 39 58 0 chrY 9126930 9126982 -15586097 + (TA)n Simple_repeat Simple_repeat 2 56 0 234 0 0 0 chrY 9127300 9127326 -15585753 + (TTTTTG)n Simple_repeat Simple_repeat 3 28 0 818 277 73 108 chrY 9128466 9128678 -15584401 - L1MC1 LINE L1 -831 5315 5097 2131 113 0 0 chrY 9128678 9128969 -15584110 - AluY SINE Alu -20 291 1 818 277 73 108 chrY 9128969 9130877 -15582202 - L1MC1 LINE L1 -1049 5097 3714 269 297 42 42 chrY 9130991 9131321 -15581758 - L1MC1 LINE L1 -2845 3301 2972 1719 152 19 39 chrY 9131474 9131784 -15581295 - AluJb SINE Alu -8 304 1 783 297 14 40 chrY 9132135 9132431 -15580648 - L2 LINE L2 -656 2658 2371 981 162 60 5 chrY 9132483 9132668 -15580411 + MSTD LTR MaLR 1 195 -201 353 134 0 15 chrY 9132758 9132825 -15580254 + (TCCC)n Simple_repeat Simple_repeat 3 68 0 298 206 0 15 chrY 9132825 9132893 -15580186 + MSTD LTR MaLR 391 457 0 568 328 83 28 chrY 9132948 9133274 -15579805 + L2 LINE L2 2914 3257 -15 * 1988 259 109 34 chrY 9133273 9134318 -15578761 - L2 LINE L2 -1 3312 2170 279 239 161 71 chrY 9135531 9135686 -15577393 - L2 LINE L2 0 3272 3104 194 244 160 34 chrY 9135838 9135957 -15577122 + L3 LINE CR1 1218 1351 -226 2039 95 37 0 chrY 9136207 9136507 -15576572 - AluSq SINE Alu 0 310 1 1676 170 0 0 chrY 9137403 9137674 -15575405 - AluJo SINE Alu -1 311 41 22 0 0 0 chrY 9137965 9137987 -15575092 + AT_rich Low_complexity Low_complexity 1 22 0 299 306 109 14 chrY 9138135 9138282 -15574797 + MIR SINE MIR 49 209 -53 722 296 110 44 chrY 9138411 9138729 -15574350 - L2 LINE L2 0 3313 2975 6182 189 62 24 chrY 9138741 9140063 -15573016 + Charlie1a DNA MER1_type 15 1394 -1367 2182 94 0 7 chrY 9140063 9140340 -15572739 - AluSx SINE Alu -17 295 21 6182 189 62 24 chrY 9140340 9140400 -15572679 + Charlie1a DNA MER1_type 1394 1450 -5 245 238 88 88 chrY 9140429 9140610 -15572469 - L1MDa LINE L1 -1687 4528 4348 981 260 113 30 chrY 9140625 9140654 -15572425 - L1MDa LINE L1 -2887 3328 3303 1038 244 23 5 chrY 9140654 9140871 -15572208 + MER58A DNA MER1_type 4 224 0 981 260 113 30 chrY 9140871 9141045 -15572034 - L1MDa LINE L1 -2912 3303 3145 423 62 0 31 chrY 9141045 9141110 -15571969 + L1PA8 LINE L1 6110 6172 0 981 260 113 30 chrY 9141110 9141471 -15571608 - L1MDa LINE L1 -3070 3145 2716 259 283 130 7 chrY 9141608 9141676 -15571403 - L1MDa LINE L1 -3698 2517 2459 2080 132 0 16 chrY 9141676 9141699 -15571380 - AluSx SINE Alu -6 306 284 186 43 0 0 chrY 9141699 9141722 -15571357 + (TCTA)n Simple_repeat Simple_repeat 4 26 0 2080 132 0 16 chrY 9141722 9142009 -15571070 - AluSx SINE Alu -28 284 1 259 283 130 7 chrY 9142009 9142078 -15571001 - L1MDa LINE L1 -3756 2459 2363 385 284 54 54 chrY 9142085 9142289 -15570790 - L1MDa LINE L1 -4038 2358 2155 646 289 85 47 chrY 9142466 9142567 -15570512 - L1MDa LINE L1 -4549 1666 1570 1575 207 13 10 chrY 9142567 9142867 -15570212 - AluJo SINE Alu -11 301 1 646 289 85 47 chrY 9142867 9143259 -15569820 - L1MDa LINE L1 -4645 1570 1311 45255 39 1 1 chrY 9143270 9148988 -15564091 + L1P2 LINE L1 2 5716 -439 227 306 0 14 chrY 9148928 9149000 -15564079 - L1P2 LINE L1 -434 5720 5650 * 1788 109 10 33 chrY 9149112 9149415 -15563664 - AluSx SINE Alu -16 296 1 243 293 104 73 chrY 9149965 9150129 -15562950 + L2 LINE L2 3103 3271 -1 246 81 0 0 chrY 9150758 9150795 -15562284 + (T)n Simple_repeat Simple_repeat 1 37 0 210 147 29 0 chrY 9153865 9153899 -15559180 - MIR SINE MIR -6 256 222 877 247 87 4 chrY 9155032 9155263 -15557816 - MIR SINE MIR -5 257 8 902 168 119 5 chrY 9155730 9155915 -15557164 + MLT1D LTR MaLR 1 206 -299 786 173 15 15 chrY 9156176 9156309 -15556770 - FLAM_A SINE Alu 0 133 1 2230 97 10 7 chrY 9156313 9156621 -15556458 - AluSq SINE Alu -4 309 1 418 301 74 81 chrY 9157271 9157493 -15555586 + L2 LINE L2 2855 3074 -198 2513 102 16 38 chrY 9157493 9157865 -15555214 + THE1B LTR MaLR 1 364 0 418 301 74 81 chrY 9157865 9158061 -15555018 + L2 LINE L2 3074 3270 -2 2389 79 3 7 chrY 9160076 9160379 -15552700 + AluSp SINE Alu 2 303 -10 2123 146 0 0 chrY 9160399 9160701 -15552378 - AluSx SINE Alu -10 302 1 711 161 0 9 chrY 9162448 9162560 -15550519 + FLAM_C SINE Alu 21 131 -12 378 283 62 0 chrY 9163718 9163831 -15549248 + L3 LINE CR1 1211 1330 -247 2125 122 3 7 chrY 9164242 9164538 -15548541 + AluSx SINE Alu 1 295 -17 1099 126 45 93 chrY 9164953 9165199 -15547880 - L1MB2 LINE L1 -2 6169 5936 3970 174 18 41 chrY 9165206 9165834 -15547245 - L1MB2 LINE L1 0 6155 5567 1768 188 13 0 chrY 9165834 9166142 -15546937 + AluJb SINE Alu 1 312 0 3970 174 18 41 chrY 9166142 9166679 -15546400 - L1MB2 LINE L1 -588 5567 5019 389 256 101 8 chrY 9169026 9169155 -15543924 + MIR3 SINE MIR 3 143 -65 638 219 26 31 chrY 9169163 9169355 -15543724 - LTR33A LTR ERVL -17 506 316 242 258 116 58 chrY 9169453 9169678 -15543401 - LTR50 LTR ERVL -557 238 1 300 313 15 15 chrY 9170037 9170168 -15542911 - ERVL LTR ERVL -3970 1794 1664 396 0 0 0 chrY 9170276 9170320 -15542759 + (TG)n Simple_repeat Simple_repeat 1 44 0 976 184 46 23 chrY 9170345 9170519 -15542560 + MER45A DNA AcHobo 1 178 0 226 323 71 0 chrY 9170525 9170624 -15542455 - L2 LINE L2 -222 3091 2986 * 267 298 71 90 chrY 9170621 9170876 -15542203 + L2 LINE L2 2963 3212 -60 508 210 7 116 chrY 9170924 9171062 -15542017 - MIR SINE MIR -93 169 47 969 143 0 0 chrY 9171137 9171270 -15541809 + FLAM_C SINE Alu 1 133 0 1576 204 4 11 chrY 9171580 9171860 -15541219 + AluJb SINE Alu 3 280 -32 23 0 0 0 chrY 9171862 9171885 -15541194 + AT_rich Low_complexity Low_complexity 1 23 0 917 153 0 0 chrY 9171888 9172019 -15541060 + FLAM_C SINE Alu 1 131 -2 188 317 49 0 chrY 9173363 9173445 -15539634 - L3 LINE CR1 -505 1072 987 388 300 57 14 chrY 9174188 9174328 -15538751 + MIR SINE MIR 36 181 -81 187 256 23 0 chrY 9174328 9174371 -15538708 + L2 LINE L2 3217 3260 -12 1525 51 22 0 chrY 9174930 9175108 -15537971 + L1PA3 LINE L1 5974 6155 0 231 377 41 25 chrY 9175723 9175845 -15537234 - L2 LINE L2 -13 3259 3136 2091 107 7 7 chrY 9177358 9177648 -15535431 - AluSc SINE Alu -19 290 1 1589 166 13 26 chrY 9177648 9177955 -15535124 - AluJo SINE Alu -9 303 1 3661 238 57 36 chrY 9177958 9179560 -15533519 - L1MEc LINE L1 -2780 3435 1829 5230 236 65 28 chrY 9179561 9180115 -15532964 - L1MEc LINE L1 -4683 1713 1181 1700 157 89 7 chrY 9180115 9180396 -15532683 - AluSx SINE Alu -8 304 1 5230 236 65 28 chrY 9180396 9181460 -15531619 - L1MEc LINE L1 -5215 1181 36 403 339 38 21 chrY 9182250 9182436 -15530643 + MIR3 SINE MIR 17 205 -3 2326 143 82 12 chrY 9183127 9183527 -15529552 + MSTC LTR MaLR 1 428 0 207 125 0 0 chrY 9184165 9184205 -15528874 + (A)n Simple_repeat Simple_repeat 1 40 0 2232 115 0 0 chrY 9185177 9185464 -15527615 + AluSx SINE Alu 1 287 -25 1114 272 42 26 chrY 9185660 9186042 -15527037 + L1ME3A LINE L1 5560 5947 -223 2712 102 58 17 chrY 9186071 9186482 -15526597 + MSTA LTR MaLR 1 428 0 1694 182 60 12 chrY 9186482 9186822 -15526257 + MLT1A1 LTR MaLR 9 365 0 353 279 142 33 chrY 9186833 9187016 -15526063 + L1ME3A LINE L1 5941 6143 -27 255 278 211 0 chrY 9187380 9187470 -15525609 + MIR3 SINE MIR 97 205 -3 249 308 187 39 chrY 9190555 9190737 -15522342 + MIR SINE MIR 53 261 -1 257 284 156 0 chrY 9191391 9191500 -15521579 + MIR SINE MIR 13 138 -124 745 264 16 16 chrY 9191617 9191799 -15521280 + MIR SINE MIR 7 188 -74 247 284 80 11 chrY 9192121 9192209 -15520870 + MIR SINE MIR 56 149 -113 546 284 87 31 chrY 9192249 9192538 -15520541 + L2 LINE L2 2988 3292 -21 19424 31 2 0 chrY 9193284 9196242 -15516837 + L1PA4 LINE L1 3194 6155 0 306 342 25 25 chrY 9198603 9198761 -15514318 - MIR3 SINE MIR -18 190 33 433 264 40 30 chrY 9199344 9199545 -15513534 - L1MC4 LINE L1 -4 8038 7836 924 226 54 21 chrY 9199593 9199872 -15513207 - L1ME2 LINE L1 -10 6154 5867 2445 148 38 49 chrY 9200540 9201012 -15512067 + MLT1C LTR MaLR 1 467 0 1086 231 87 13 chrY 9201056 9201367 -15511712 - L1ME3A LINE L1 -17 6153 5820 2002 122 11 11 chrY 9201633 9201920 -15511159 + AluSg SINE Alu 3 289 -21 2127 127 3 0 chrY 9201950 9202250 -15510829 - AluSx SINE Alu -11 301 1 998 184 87 0 chrY 9202252 9202459 -15510620 + L1ME1 LINE L1 4475 4699 -1447 824 193 17 28 chrY 9202502 9202612 -15510467 + AluJb SINE Alu 1 111 -201 432 37 0 0 chrY 9202612 9202666 -15510413 + (CA)n Simple_repeat Simple_repeat 1 54 0 2069 104 4 0 chrY 9202668 9202937 -15510142 - AluSg SINE Alu -19 291 22 824 193 17 28 chrY 9202937 9202999 -15510080 + AluJb SINE Alu 112 174 -138 232 179 179 45 chrY 9202999 9203085 -15509994 + AluJ/FRAM SINE Alu 222 302 0 3748 201 63 14 chrY 9203188 9204509 -15508570 + L1ME1 LINE L1 4786 6334 0 2250 113 0 3 chrY 9204634 9204936 -15508143 + AluSq SINE Alu 1 301 -12 300 27 0 0 chrY 9205703 9205740 -15507339 + (TTTC)n Simple_repeat Simple_repeat 1 37 0 319 333 49 10 chrY 9206798 9206900 -15506179 - MER91C DNA MER1_type -2 138 33 338 272 9 44 chrY 9206993 9207107 -15505972 - MER102a DNA MER1_type 0 330 221 864 146 0 0 chrY 9207133 9207256 -15505823 + FLAM_A SINE Alu 1 123 -10 1927 104 0 4 chrY 9207263 9207514 -15505565 + AluSg SINE Alu 39 288 -22 26 0 0 0 chrY 9207514 9207540 -15505539 + AT_rich Low_complexity Low_complexity 1 26 0 1781 178 0 7 chrY 9207681 9207984 -15505095 + AluJo SINE Alu 1 301 -11 466 187 0 0 chrY 9208362 9208437 -15504642 - FLAM SINE Alu -21 122 48 275 242 108 33 chrY 9210408 9210528 -15502551 + L3b LINE CR1 1368 1496 -87 195 280 0 0 chrY 9210919 9210969 -15502110 + MIR SINE MIR 83 132 -76 792 272 246 14 chrY 9210976 9211454 -15501625 - L2 LINE L2 0 3313 2737 332 215 0 0 chrY 9214521 9214586 -15498493 + MLT1H LTR MaLR 263 327 -222 819 214 114 15 chrY 9214612 9214813 -15498266 - MER58A DNA MER1_type -2 222 2 523 134 31 118 chrY 9214830 9214957 -15498122 + MLT1H LTR MaLR 431 546 -3 335 354 82 6 chrY 9215223 9215381 -15497698 + L2 LINE L2 3103 3272 0 204 350 45 23 chrY 9216366 9216543 -15496536 - L2 LINE L2 -264 3008 2828 184 318 34 45 chrY 9216872 9216960 -15496119 - L2 LINE L2 0 3272 3186 247 257 54 68 chrY 9217043 9217117 -15495962 + L2 LINE L2 3191 3263 -9 478 242 0 0 chrY 9217120 9217211 -15495868 - L2 LINE L2 0 3313 3223 224 283 71 26 chrY 9217456 9217569 -15495510 - L2 LINE L2 -4 3309 3192 180 209 15 60 chrY 9217978 9218045 -15495034 - L2 LINE L2 -3140 174 111 223 241 17 0 chrY 9218170 9218228 -15494851 + CT-rich Low_complexity Low_complexity 2 60 0 220 150 25 88 chrY 9218968 9219048 -15494031 + GA-rich Low_complexity Low_complexity 3 77 0 233 274 53 62 chrY 9219222 9219335 -15493744 - MIR SINE MIR -32 230 119 705 306 128 20 chrY 9219763 9220162 -15492917 - L3 LINE CR1 -32 1545 1104 813 197 11 44 chrY 9220163 9220346 -15492733 - FRAM SINE Alu 0 176 1 379 322 91 7 chrY 9220347 9220490 -15492589 - L3 LINE CR1 -466 1111 957 308 304 78 37 chrY 9220554 9220745 -15492334 - L2 LINE L2 -165 3107 2909 2370 121 74 2 chrY 9220850 9221254 -15491825 - Tigger2 DNA MER2_type -5 2713 2281 433 127 0 0 chrY 9221261 9221324 -15491755 - Tigger2 DNA MER2_type -2655 63 1 389 232 81 85 chrY 9227857 9228068 -15485011 - MIR SINE MIR -52 210 1 375 191 51 51 chrY 9231780 9231937 -15481142 + L1ME4a LINE L1 5965 6121 0 3296 137 21 21 chrY 9235010 9235614 -15477465 - L1MB3 LINE L1 -7 6176 5573 409 193 18 28 chrY 9235623 9235732 -15477347 - L1MC2 LINE L1 0 6344 6237 188 333 0 0 chrY 9235956 9236013 -15477066 - MIR3 SINE MIR -16 192 136 2601 89 31 31 chrY 9236935 9237349 -15475730 - L1MA1 LINE L1 0 6302 5889 1037 183 16 0 chrY 9237799 9237985 -15475094 + MER5A DNA MER1_type 1 189 0 340 200 93 50 chrY 9238796 9238921 -15474158 - L1ME4a LINE L1 -2 6119 5986 871 221 80 55 chrY 9238921 9239247 -15473832 - MER46C DNA MER2_type -2 336 3 340 200 93 50 chrY 9239247 9239261 -15473818 - L1ME4a LINE L1 -135 5986 5974 506 277 118 33 chrY 9239324 9239653 -15473426 - L1ME4a LINE L1 -252 5869 5513 183 219 141 16 chrY 9239761 9239825 -15473254 + L3b LINE CR1 1271 1342 -241 35 0 0 0 chrY 9241475 9241510 -15471569 + AT_rich Low_complexity Low_complexity 1 35 0 414 280 227 0 chrY 9241907 9242039 -15471040 + MIR3 SINE MIR 16 177 -31 1012 189 35 0 chrY 9242611 9242812 -15470267 + MER3 DNA MER1_type 2 209 0 241 308 29 39 chrY 9242889 9242993 -15470086 - L2 LINE L2 -6 3266 3164 493 293 72 19 chrY 9343471 9343734 -15369345 + HAL1b LINE L1 714 990 -358 240 291 47 0 chrY 9343795 9343881 -15369198 - MER68 LTR ERV1 -469 93 4 1688 186 3 17 chrY 9344010 9344311 -15368768 + AluSx SINE Alu 1 297 -15 188 222 16 127 chrY 9344926 9344989 -15368090 - L2 LINE L2 -33 3239 3184 1931 130 79 23 chrY 9345864 9346218 -15366861 + THE1C LTR MaLR 1 374 -1 349 235 25 0 chrY 9346297 9346376 -15366703 + MER20 DNA MER1_type 32 112 -107 1747 181 115 13 chrY 9346376 9346768 -15366311 + LTR51 LTR ERV1 1 432 -239 * 2405 133 46 14 chrY 9346765 9347200 -15365879 + HSMAR2 DNA Mariner 854 1302 0 1177 313 75 47 chrY 9347200 9348203 -15364876 + L1MEc LINE L1 117 1091 -5305 2256 123 3 0 chrY 9348203 9348512 -15364567 + AluSp SINE Alu 1 310 -3 1177 313 75 47 chrY 9348512 9348556 -15364523 + L1MEc LINE L1 1091 1132 -5264 246 32 0 0 chrY 9348556 9348587 -15364492 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1177 313 75 47 chrY 9348587 9349016 -15364063 + L1MEc LINE L1 1132 1548 -4848 1455 138 36 4 chrY 9349016 9349241 -15363838 + AluY SINE Alu 43 274 -37 255 31 0 0 chrY 9349245 9349277 -15363802 + (CA)n Simple_repeat Simple_repeat 1 32 0 1177 313 75 47 chrY 9349277 9349628 -15363451 + L1MEc LINE L1 1550 2002 -4394 581 285 74 29 chrY 9349634 9350368 -15362711 + L1MEc LINE L1 2790 3556 -2659 2034 125 3 0 chrY 9350445 9350740 -15362339 - AluY SINE Alu -15 296 1 231 143 33 33 chrY 9351190 9351281 -15361798 + (TA)n Simple_repeat Simple_repeat 2 92 0 475 361 33 0 chrY 9351798 9351981 -15361098 + MER5A DNA MER1_type 1 189 0 30 0 0 0 chrY 9352222 9352252 -15360827 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chrY 9353204 9353226 -15359853 + AT_rich Low_complexity Low_complexity 1 22 0 3021 171 8 28 chrY 9353351 9353998 -15359081 + MER41B LTR ERV1 1 475 -11 777 201 13 13 chrY 9354440 9354589 -15358490 + AluJo SINE Alu 1 149 -163 1150 196 0 0 chrY 9354589 9354773 -15358306 - AluSx SINE Alu -127 185 2 205 204 86 108 chrY 9355234 9355327 -15357752 - MIR3 SINE MIR -103 105 15 635 202 0 0 chrY 9355357 9355476 -15357603 + FLAM_C SINE Alu 1 119 -24 1203 153 14 0 chrY 9355825 9356047 -15357032 - MLT1B LTR MaLR -4 386 162 1396 209 26 14 chrY 9356051 9356419 -15356660 - MLT1B LTR MaLR 0 396 20 528 141 0 0 chrY 9356585 9356677 -15356402 - L1PB1 LINE L1 -2 6149 6058 3924 158 124 47 chrY 9356680 9358118 -15354961 - pTR5 LTR ERV1 0 2438 743 1538 147 106 6 chrY 9358118 9358378 -15354701 - L1PB1 LINE L1 -90 6061 5762 330 26 0 0 chrY 9358378 9358417 -15354662 + (TCTA)n Simple_repeat Simple_repeat 1 39 0 1538 147 106 6 chrY 9358417 9358476 -15354603 - L1PB1 LINE L1 -389 5762 5710 296 184 39 68 chrY 9358921 9359024 -15354055 + LTR12 LTR ERV1 239 338 -376 374 219 7 75 chrY 9359048 9359194 -15353885 + pTR5 LTR ERV1 19 154 -2284 634 67 0 0 chrY 9359584 9359673 -15353406 - L1PA5 LINE L1 -3 6151 6063 1121 229 47 7 chrY 9359706 9360003 -15353076 + L1MC2 LINE L1 5978 6286 -58 2426 84 0 0 chrY 9360842 9361152 -15351927 - AluY SINE Alu -1 310 1 385 327 138 42 chrY 9361470 9362129 -15350950 + L2 LINE L2 2200 2969 -303 341 177 35 50 chrY 9363066 9363207 -15349872 + (TA)n Simple_repeat Simple_repeat 1 139 0 22 0 0 0 chrY 9363410 9363432 -15349647 + AT_rich Low_complexity Low_complexity 1 22 0 7726 75 15 1 chrY 9363628 9364621 -15348458 - LTR13 LTR ERVK 0 1007 1 476 171 12 0 chrY 9364786 9364868 -15348211 - AluSg/x SINE Alu -18 291 209 2460 127 65 0 chrY 9365271 9365658 -15347421 - L1PA10 LINE L1 -2 6166 5755 461 209 34 57 chrY 9366579 9366663 -15346416 + MER3 DNA MER1_type 32 116 -93 872 199 27 59 chrY 9366663 9366884 -15346195 - MER20 DNA MER1_type -4 215 2 461 209 34 57 chrY 9366884 9366976 -15346103 + MER3 DNA MER1_type 116 204 -5 815 88 7 59 chrY 9367003 9367139 -15345940 + L1MA1 LINE L1 6172 6300 -2 3289 161 61 50 chrY 9368545 9369495 -15343584 + pTR5 LTR ERV1 743 2028 -410 298 213 43 32 chrY 9369496 9369590 -15343489 + LTR30 LTR ERV1 548 642 -80 1192 121 1 7 chrY 9369590 9369785 -15343294 + pTR5 LTR ERV1 66 392 -2046 1221 162 81 7 chrY 9369877 9370149 -15342930 + L1MB3 LINE L1 5869 6160 -23 852 130 5 32 chrY 9370164 9370349 -15342730 + (GGA)n Simple_repeat Simple_repeat 1 180 0 561 139 9 17 chrY 9370328 9370443 -15342636 + GA-rich Low_complexity Low_complexity 1 114 0 * 405 198 198 12 chrY 9371102 9371248 -15341831 + MER5A DNA MER1_type 4 180 -9 251 320 39 0 chrY 9372004 9372107 -15340972 + MLT1I LTR MaLR 68 174 -235 1972 126 4 0 chrY 9372456 9372726 -15340353 - AluSx SINE Alu -11 301 31 261 57 0 0 chrY 9372780 9372815 -15340264 + (A)n Simple_repeat Simple_repeat 1 35 0 978 167 20 5 chrY 9372842 9373040 -15340039 + L1MB2 LINE L1 5940 6140 -31 352 150 33 0 chrY 9373064 9373124 -15339955 - AluJ/FRAM SINE Alu -14 288 227 1017 238 44 75 chrY 9373580 9374127 -15338952 + MER34 LTR ERV1 4 533 -9 264 30 0 0 chrY 9375159 9375192 -15337887 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 390 257 21 43 chrY 9375301 9375441 -15337638 - MIR SINE MIR -61 201 65 644 272 0 37 chrY 9375705 9375896 -15337183 + MER5A DNA MER1_type 3 186 -3 27 62 0 0 chrY 9376119 9376167 -15336912 + AT_rich Low_complexity Low_complexity 1 48 0 674 60 60 0 chrY 9376193 9376293 -15336786 + L1P LINE L1 3358 3463 -2683 26594 125 16 12 chrY 9376754 9382557 -15330522 + L1PA7 LINE L1 622 6467 -2 318 240 16 8 chrY 9382602 9382727 -15330352 + GA-rich Low_complexity Low_complexity 2 127 0 986 115 22 7 chrY 9382728 9382867 -15330212 - AluSg1 SINE Alu -168 141 1 1584 161 12 62 chrY 9383221 9383544 -15329535 + AluSx SINE Alu 1 307 -5 5318 96 30 28 chrY 9384371 9385150 -15327929 - LTR17 LTR ERV1 0 780 1 1768 179 0 13 chrY 9386712 9387019 -15326060 + AluJo SINE Alu 1 303 -9 545 187 69 149 chrY 9388186 9388561 -15324518 - LTR37A LTR ERV1 -1 425 81 2200 110 10 0 chrY 9388821 9389122 -15323957 + AluSq SINE Alu 1 304 -9 1096 267 46 3 chrY 9389207 9389533 -15323546 + MER58B DNA MER1_type 1 340 -1 324 247 43 11 chrY 9389576 9389669 -15323410 + LTR48B LTR ERV1 1 96 -548 780 224 115 57 chrY 9389737 9390086 -15322993 + MER39 LTR ERV1 333 701 -6 285 337 0 11 chrY 9390324 9390413 -15322666 + MIR3 SINE MIR 106 193 -15 324 0 0 0 chrY 9391387 9391423 -15321656 + (TA)n Simple_repeat Simple_repeat 2 37 0 2068 140 0 3 chrY 9391487 9391795 -15321284 + AluSx SINE Alu 1 307 -5 289 178 0 0 chrY 9391901 9391946 -15321133 + Alu SINE Alu 1 45 -254 785 183 102 0 chrY 9391946 9392083 -15320996 + AluSg/x SINE Alu 137 287 -25 375 23 0 0 chrY 9392083 9392127 -15320952 + (TGAA)n Simple_repeat Simple_repeat 3 46 0 201 225 169 28 chrY 9392567 9392638 -15320441 + MIR SINE MIR 67 147 -115 644 277 90 77 chrY 9392704 9393170 -15319909 - MLT1J LTR MaLR -38 473 2 205 256 0 0 chrY 9393217 9393260 -15319819 + L2 LINE L2 3210 3252 -20 22 35 0 0 chrY 9393266 9393295 -15319784 + AT_rich Low_complexity Low_complexity 1 29 0 964 236 19 5 chrY 9393347 9393563 -15319516 - MER20 DNA MER1_type 0 219 1 2065 192 55 0 chrY 9393701 9394117 -15318962 - MER65C LTR ERV1 -22 439 1 477 300 167 45 chrY 9394255 9394585 -15318494 - L2 LINE L2 0 3313 2944 1855 180 3 3 chrY 9394628 9394934 -15318145 + AluSx SINE Alu 1 306 -6 267 152 0 0 chrY 9395057 9395103 -15317976 + (CATATA)n Simple_repeat Simple_repeat 3 48 0 2295 47 44 3 chrY 9395107 9395404 -15317675 - AluY SINE Alu -2 309 1 288 330 75 10 chrY 9395410 9395610 -15317469 - L2 LINE L2 -602 2712 2500 187 373 0 0 chrY 9395809 9395884 -15317195 + MIR SINE MIR 71 145 -117 2118 137 3 0 chrY 9397008 9397308 -15315771 - AluY SINE Alu -10 301 1 2177 110 3 0 chrY 9397610 9397902 -15315177 + AluSg SINE Alu 1 293 -17 353 264 100 0 chrY 9398159 9398299 -15314780 + L1MD2 LINE L1 6194 6347 -12 21 0 0 0 chrY 9398453 9398474 -15314605 + AT_rich Low_complexity Low_complexity 1 21 0 1568 178 201 8 chrY 9398816 9399175 -15313904 - MSTA LTR MaLR 0 428 1 205 415 0 0 chrY 9399216 9399334 -15313745 + MIR SINE MIR 84 201 -61 1459 159 92 28 chrY 9399695 9400084 -15312995 - L1MB7 LINE L1 -7 6177 5764 22 0 0 0 chrY 9401657 9401679 -15311400 + AT_rich Low_complexity Low_complexity 1 22 0 275 342 71 7 chrY 9401689 9401844 -15311235 - MIR SINE MIR -29 233 69 21 0 0 0 chrY 9402097 9402118 -15310961 + AT_rich Low_complexity Low_complexity 1 21 0 2554 118 0 11 chrY 9402192 9402558 -15310521 + THE1B LTR MaLR 1 362 -2 230 273 15 0 chrY 9402975 9403041 -15310038 + MIR SINE MIR 164 230 -32 2139 130 3 0 chrY 9403403 9403704 -15309375 + AluSp SINE Alu 1 302 -11 1599 118 27 8 chrY 9404597 9404859 -15308220 + L1MC1 LINE L1 6066 6332 -1 892 184 12 12 chrY 9404967 9405135 -15307944 + AluSg/x SINE Alu 132 299 -11 181 162 54 0 chrY 9405260 9405297 -15307782 + L2 LINE L2 3022 3060 -212 24 53 0 0 chrY 9405774 9405812 -15307267 + AT_rich Low_complexity Low_complexity 1 38 0 898 184 38 52 chrY 9405857 9406069 -15307010 - MER2 DNA MER2_type -107 238 30 38724 66 6 5 chrY 9406325 9412465 -15300614 + L1PA4 LINE L1 1 6149 -6 506 122 31 20 chrY 9412465 9412563 -15300516 - L1MB7 LINE L1 -19 6165 6067 39303 46 22 2 chrY 9412564 9418590 -15294489 + L1PA2 LINE L1 1 6151 -4 536 149 28 0 chrY 9418612 9418719 -15294360 - L1MB7 LINE L1 -107 6077 5968 502 153 0 12 chrY 9418846 9418931 -15294148 - AluJb SINE Alu -24 288 205 2955 6 0 0 chrY 9419075 9419391 -15293688 - AluYb8 SINE Alu -2 316 1 21 0 0 0 chrY 9419408 9419429 -15293650 + AT_rich Low_complexity Low_complexity 1 21 0 1735 204 89 34 chrY 9421304 9421744 -15291335 - MLT1C LTR MaLR -1 466 3 1960 123 0 41 chrY 9422556 9422849 -15290230 + AluY SINE Alu 1 281 -30 231 114 0 0 chrY 9422857 9422892 -15290187 + (CA)n Simple_repeat Simple_repeat 2 36 0 512 316 64 0 chrY 9423017 9423188 -15289891 + MER5A DNA MER1_type 1 182 -7 1291 210 7 46 chrY 9424627 9424932 -15288147 - AluJo SINE Alu -15 297 5 595 221 25 8 chrY 9425139 9425261 -15287818 - FLAM_A SINE Alu -8 134 11 273 275 0 50 chrY 9426208 9426368 -15286711 + (CAGAGA)n Simple_repeat Simple_repeat 4 155 0 640 225 72 34 chrY 9426368 9426577 -15286502 + MER20 DNA MER1_type 1 217 -2 1684 153 41 20 chrY 9426836 9427131 -15285948 - AluSc SINE Alu -8 301 1 232 254 32 0 chrY 9427413 9427476 -15285603 + GA-rich Low_complexity Low_complexity 2 66 0 676 164 62 39 chrY 9427506 9427634 -15285445 + FLAM_C SINE Alu 1 131 -2 1192 200 0 9 chrY 9427638 9427863 -15285216 + AluJo SINE Alu 87 309 -3 749 228 6 13 chrY 9427974 9428132 -15284947 - FRAM SINE Alu -19 157 1 2050 119 3 14 chrY 9429281 9429575 -15283504 + AluSx SINE Alu 11 301 -11 360 200 0 0 chrY 9429589 9429649 -15283430 + AluS SINE Alu 1 60 -248 894 191 0 13 chrY 9429653 9429810 -15283269 + AluSg/x SINE Alu 140 294 -16 1713 144 20 17 chrY 9430303 9430602 -15282477 - AluSc SINE Alu -9 300 1 1896 142 0 17 chrY 9430616 9430905 -15282174 - AluSx SINE Alu -28 284 1 1282 214 22 54 chrY 9431810 9432123 -15280956 + AluJo SINE Alu 3 305 -7 285 253 73 0 chrY 9432558 9432676 -15280403 - MIR SINE MIR -54 208 81 633 168 80 9 chrY 9434741 9434854 -15278225 - AluSq/x SINE Alu -191 122 2 1890 119 82 17 chrY 9434879 9435173 -15277906 - AluSq SINE Alu 0 313 1 333 0 0 0 chrY 9435194 9435231 -15277848 + (A)n Simple_repeat Simple_repeat 1 37 0 198 0 0 0 chrY 9435606 9435628 -15277451 + (A)n Simple_repeat Simple_repeat 1 22 0 2125 105 13 0 chrY 9437991 9438296 -15274783 - AluSc SINE Alu 0 309 1 705 234 120 0 chrY 9439083 9439241 -15273838 + MER45A DNA AcHobo 1 177 -1 1856 171 43 12 chrY 9439275 9439602 -15273477 + MER1B DNA MER1_type 1 337 0 1848 166 0 10 chrY 9440927 9441229 -15271850 - AluSx SINE Alu -13 299 1 209 157 78 0 chrY 9441231 9441282 -15271797 + (TTTG)n Simple_repeat Simple_repeat 1 55 0 237 369 15 23 chrY 9441314 9441444 -15271635 - MER5A DNA MER1_type -52 137 9 1525 177 8 4 chrY 9441474 9441740 -15271339 + AluJb SINE Alu 33 299 -13 312 70 0 0 chrY 9442461 9442504 -15270575 + (CA)n Simple_repeat Simple_repeat 2 44 0 42027 49 23 1 chrY 9442555 9448577 -15264502 + L1PA3 LINE L1 2 6155 0 25 0 0 0 chrY 9448577 9448602 -15264477 + AT_rich Low_complexity Low_complexity 1 25 0 1814 117 37 4 chrY 9450054 9450356 -15262723 + AluSg SINE Alu 1 311 0 860 139 60 13 chrY 9450842 9450993 -15262086 - AluSx SINE Alu -141 171 14 851 169 71 71 chrY 9451290 9451515 -15261564 + AluJo SINE Alu 87 311 -1 189 132 0 0 chrY 9452130 9452168 -15260911 + (TAGA)n Simple_repeat Simple_repeat 1 38 0 234 0 0 0 chrY 9452189 9452215 -15260864 + (TA)n Simple_repeat Simple_repeat 1 26 0 22 56 0 0 chrY 9452439 9452475 -15260604 + AT_rich Low_complexity Low_complexity 1 36 0 21 36 0 0 chrY 9452487 9452515 -15260564 + AT_rich Low_complexity Low_complexity 1 28 0 226 49 24 24 chrY 9452539 9452580 -15260499 + (TAGA)n Simple_repeat Simple_repeat 2 42 0 229 279 13 13 chrY 9452637 9452716 -15260363 - L1MDa LINE L1 -4603 1937 1859 330 277 71 52 chrY 9453787 9453942 -15259137 + MIR SINE MIR 41 198 -64 623 239 17 0 chrY 9454533 9454650 -15258429 - FLAM_C SINE Alu -24 119 1 281 351 47 32 chrY 9454659 9455064 -15258015 + L1ME3A LINE L1 5525 5935 -235 1882 168 3 10 chrY 9455111 9455421 -15257658 + AluSx SINE Alu 1 308 -4 1101 122 0 64 chrY 9456107 9456295 -15256784 - L1PB1 LINE L1 -2 6149 5974 3314 120 0 0 chrY 9456296 9456764 -15256315 + L1PB1 LINE L1 5499 5966 -185 239 318 36 18 chrY 9456837 9456947 -15256132 - L2 LINE L2 -1063 2251 2140 263 247 0 25 chrY 9457328 9457409 -15255670 + GA-rich Low_complexity Low_complexity 1 79 0 1666 173 37 0 chrY 9457471 9457771 -15255308 + AluSx SINE Alu 1 311 -1 1668 178 3 24 chrY 9457870 9458168 -15254911 - AluSx SINE Alu -16 296 5 2068 127 0 3 chrY 9458326 9458652 -15254427 + AluSg SINE Alu 1 325 0 401 281 55 0 chrY 9458982 9459110 -15253969 - MER5B DNA MER1_type -40 138 4 726 175 46 133 chrY 9459191 9459221 -15253858 - MER20 DNA MER1_type 0 219 188 1940 121 0 7 chrY 9459221 9459494 -15253585 - AluSg SINE Alu -5 305 35 726 175 46 133 chrY 9459494 9459703 -15253376 - MER20 DNA MER1_type -31 188 1 259 281 88 18 chrY 9460270 9460384 -15252695 - L2 LINE L2 0 3313 3192 868 259 95 11 chrY 9460937 9461199 -15251880 - HERVL40 LTR ERVL -2410 3120 2837 43776 53 2 1 chrY 9461203 9467352 -15245727 - L1PA4 LINE L1 0 6155 1 598 170 128 144 chrY 9468507 9468658 -15244421 - LTR23-int LTR ERV1 -3285 1651 1499 2524 84 0 0 chrY 9468658 9468969 -15244110 + AluY SINE Alu 1 311 0 598 170 128 144 chrY 9468969 9469193 -15243886 - LTR23-int LTR ERV1 -3437 1499 1282 390 203 65 72 chrY 9469187 9469325 -15243754 - LTR23-int LTR ERV1 -2340 2596 2460 * 455 275 77 10 chrY 9469297 9469504 -15243575 - LTR23-int LTR ERV1 -2547 2576 2356 1729 181 3 10 chrY 9469537 9469854 -15243225 - AluSx SINE Alu 0 312 1 430 304 74 47 chrY 9471402 9471698 -15241381 - HERVL40 LTR ERVL -3165 2178 1875 2329 112 0 0 chrY 9472451 9472754 -15240325 - AluSg SINE Alu -7 303 1 223 310 80 18 chrY 9474572 9474685 -15238394 - MIR SINE MIR -74 188 69 511 173 50 14 chrY 9475187 9475326 -15237753 - L1MB7 LINE L1 -1 6183 6040 1602 170 75 93 chrY 9475698 9476192 -15236887 + LTR1 LTR ERV1 12 496 -289 1125 231 88 0 chrY 9476204 9476533 -15236546 - L1MB3 LINE L1 -258 5925 5568 * 1831 200 23 14 chrY 9476524 9476954 -15236125 - L1MB7 LINE L1 -489 5802 5369 24 32 0 0 chrY 9477014 9477045 -15236034 + AT_rich Low_complexity Low_complexity 1 31 0 1451 205 3 27 chrY 9477045 9477246 -15235833 - AluJb SINE Alu -24 288 95 1586 154 87 42 chrY 9477246 9477604 -15235475 - THE1C LTR MaLR -1 374 1 1451 205 3 27 chrY 9477604 9477695 -15235384 - AluJb SINE Alu -217 95 3 2509 241 63 44 chrY 9477705 9478781 -15234298 - L1MB7 LINE L1 -1827 4319 3223 1941 151 27 7 chrY 9479525 9479824 -15233255 - AluSc SINE Alu -2 307 3 243 328 172 0 chrY 9481095 9481211 -15231868 + L2 LINE L2 3133 3268 -4 234 252 41 7 chrY 9481291 9481438 -15231641 + (TATAA)n Simple_repeat Simple_repeat 2 153 0 1990 137 3 10 chrY 9482044 9482358 -15230721 + AluSx SINE Alu 1 312 0 2075 122 7 0 chrY 9482478 9482766 -15230313 + AluSx SINE Alu 1 290 -22 221 234 0 0 chrY 9482770 9482817 -15230262 + L2 LINE L2 3267 3313 0 23 0 0 0 chrY 9482921 9482944 -15230135 + AT_rich Low_complexity Low_complexity 1 23 0 1581 149 48 0 chrY 9484415 9484683 -15228396 - AluSx SINE Alu -7 305 25 2396 15 0 0 chrY 9485784 9486077 -15227002 - AluYa5 SINE Alu 0 338 46 382 248 67 0 chrY 9488328 9488433 -15224646 + MIR SINE MIR 79 190 -72 188 167 0 0 chrY 9488725 9488755 -15224324 - MIR SINE MIR -68 140 111 207 216 20 0 chrY 9489385 9489436 -15223643 + GA-rich Low_complexity Low_complexity 3 54 0 1997 141 3 3 chrY 9489640 9489937 -15223142 + AluSx SINE Alu 8 304 -8 656 218 0 3 chrY 9489948 9490172 -15222907 + AluJb SINE Alu 1 290 -22 357 24 0 0 chrY 9490173 9490215 -15222864 + (CA)n Simple_repeat Simple_repeat 2 43 0 188 284 45 45 chrY 9490392 9490480 -15222599 - MIR SINE MIR -92 170 83 230 369 0 54 chrY 9490744 9490855 -15222224 - L3 LINE CR1 -13 1564 1460 403 312 111 21 chrY 9491032 9491266 -15221813 - MIR SINE MIR 0 262 8 397 298 18 0 chrY 9491869 9491983 -15221096 + MER45A DNA AcHobo 3 118 -60 38724 49 29 2 chrY 9491983 9497959 -15215120 - L1PA3 LINE L1 -9 6146 4 310 164 123 0 chrY 9497959 9498032 -15215047 + MER45A DNA AcHobo 96 177 -1 1982 228 42 15 chrY 9499148 9499353 -15213726 + L1MB5 LINE L1 5623 5821 -353 1768 129 17 46 chrY 9499353 9499655 -15213424 + AluSx SINE Alu 1 293 -19 1982 228 42 15 chrY 9499655 9499979 -15213100 + L1MB5 LINE L1 5821 6166 -8 28 0 0 0 chrY 9499998 9500026 -15213053 + AT_rich Low_complexity Low_complexity 1 28 0 676 249 55 121 chrY 9500565 9501243 -15211836 + MER21B LTR ERV1 24 656 -207 1907 138 19 58 chrY 9501326 9501703 -15211376 + MER4B LTR ERV1 1 362 -248 1038 148 0 0 chrY 9501793 9501885 -15211194 + (GAAA)n Simple_repeat Simple_repeat 1 268 0 1038 148 0 0 chrY 9501885 9502061 -15211018 + (GAAA)n Simple_repeat Simple_repeat 4 179 0 1386 183 8 0 chrY 9502114 9502370 -15210709 + MER4A LTR ERV1 417 664 0 1260 201 99 19 chrY 9502372 9502695 -15210384 + MER4A-int LTR ERV1 1 349 -6249 207 100 0 0 chrY 9502700 9502730 -15210349 + (TTTTA)n Simple_repeat Simple_repeat 1 30 0 20502 155 94 30 chrY 9502730 9506929 -15206150 - L1PA8 LINE L1 -24 6148 1467 2748 22 0 0 chrY 9506929 9507240 -15205839 - AluYa5 SINE Alu 0 311 1 20502 155 94 30 chrY 9507240 9508806 -15204273 - L1PA8 LINE L1 -4705 1467 3 490 167 22 19 chrY 9508810 9508987 -15204092 + MER4A-int LTR ERV1 344 563 -6035 335 169 0 0 chrY 9509054 9509113 -15203966 + MER4A-int LTR ERV1 751 809 -5789 195 42 0 0 chrY 9509123 9509147 -15203932 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1961 159 33 3 chrY 9509180 9509539 -15203540 - L1PB1 LINE L1 0 6867 6498 451 171 19 0 chrY 9509543 9509648 -15203431 + (TA)n Simple_repeat Simple_repeat 1 107 0 11429 204 25 25 chrY 9509661 9513340 -15199739 - L1PB1 LINE L1 -360 6507 2833 3159 126 42 70 chrY 9513346 9513959 -15199120 + LTR4 LTR ERV1 1 596 0 6348 166 40 10 chrY 9514001 9515124 -15197955 - L1PB1 LINE L1 -4104 2759 1588 3322 133 6 8 chrY 9515124 9515636 -15197443 + MER9 LTR ERVK 1 511 0 6348 166 40 10 chrY 9515636 9515864 -15197215 - L1PB1 LINE L1 -5275 1588 1368 414 119 0 0 chrY 9515907 9515974 -15197105 - L1PB1 LINE L1 -5704 1159 1093 3261 256 57 6 chrY 9515976 9516968 -15196111 - L1PB1 LINE L1 -5816 1047 6 887 266 84 32 chrY 9517158 9517466 -15195613 + MER4A-int LTR ERV1 1845 2168 -4163 8062 162 65 66 chrY 9517518 9518825 -15194254 + MER4B-int LTR ERV1 198 1576 -5182 445 203 0 0 chrY 9518825 9518919 -15194160 - AluSg/x SINE Alu 0 301 208 8062 162 65 66 chrY 9518919 9519722 -15193357 + MER4B-int LTR ERV1 1576 2379 -4379 195 129 0 0 chrY 9519731 9519762 -15193317 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 225 171 0 0 chrY 9519787 9519822 -15193257 - AluSq/x SINE Alu -62 237 203 487 261 0 0 chrY 9519825 9519944 -15193135 - AluSq/x SINE Alu -193 119 1 323 116 0 0 chrY 9519960 9520029 -15193050 + MER4B-int LTR ERV1 2389 2457 -4301 1001 267 88 42 chrY 9520046 9520616 -15192463 - LTR9 LTR ERV1 -16 596 1 * 10087 176 46 31 chrY 9520616 9521252 -15191827 + MER4B-int LTR ERV1 2454 3079 -3679 588 99 0 12 chrY 9521252 9521333 -15191746 - MADE1 DNA Mariner 0 80 1 10087 176 46 31 chrY 9521333 9522397 -15190682 + MER4B-int LTR ERV1 3079 4194 -2564 1552 174 10 35 chrY 9522397 9522685 -15190394 + AluY SINE Alu 6 286 -25 10087 176 46 31 chrY 9522685 9523058 -15190021 + MER4B-int LTR ERV1 4194 4560 -2198 1353 138 200 4 chrY 9523059 9523299 -15189780 + LTR12 LTR ERV1 1 287 -427 322 244 12 0 chrY 9523301 9523387 -15189692 + LTR30 LTR ERV1 556 642 -80 612 173 42 18 chrY 9523387 9523513 -15189566 + LTR12 LTR ERV1 300 584 -130 * 32450 129 25 11 chrY 9523505 9531660 -15181419 + HERV9 LTR ERV1 54 8398 -1 244 186 0 0 chrY 9531661 9531704 -15181375 + LTR30 LTR ERV1 1 43 -679 2223 86 4 0 chrY 9531711 9532014 -15181065 - AluY SINE Alu 0 304 1 1191 142 9 66 chrY 9532014 9532240 -15180839 + LTR12 LTR ERV1 46 258 -456 332 278 43 0 chrY 9532240 9532355 -15180724 + LTR30 LTR ERV1 524 643 -79 572 156 62 0 chrY 9532355 9532451 -15180628 + LTR12 LTR ERV1 480 581 -133 4369 116 39 78 chrY 9532452 9533294 -15179785 + MER4B-int LTR ERV1 4559 5367 -1391 2497 188 21 13 chrY 9533292 9533770 -15179309 - MER41A-int LTR ERV1 -5464 482 1 * 3459 137 13 16 chrY 9533778 9534326 -15178753 - MER41A LTR ERV1 -8 546 1 535 264 10 15 chrY 9534326 9534523 -15178556 - L1 LINE L1 -3004 3142 2947 1376 209 76 21 chrY 9534648 9534978 -15178101 + LTR32 LTR ERVL 113 460 -11 3442 280 53 32 chrY 9534990 9536256 -15176823 + HERVL32 LTR ERVL 1 1293 -2125 1226 174 0 14 chrY 9536674 9536887 -15176192 + AluSg SINE Alu 1 210 -100 27550 128 14 32 chrY 9536887 9542830 -15170249 + L1PA7 LINE L1 601 6464 -5 1825 217 10 5 chrY 9544369 9544761 -15168318 - L1P3 LINE L1 -3990 3594 3201 1566 149 75 0 chrY 9544797 9545077 -15168002 + AluSq SINE Alu 23 313 0 397 291 6 113 chrY 9545081 9545284 -15167795 - L1P3 LINE L1 -4976 2022 610 583 261 13 26 chrY 9545310 9545463 -15167616 - L1P3 LINE L1 -7351 230 80 5159 230 116 19 chrY 9545466 9546506 -15166573 - L1M1 LINE L1 -5162 2403 1466 1750 179 0 0 chrY 9546506 9546809 -15166270 - AluSg SINE Alu 0 303 1 5159 230 116 19 chrY 9546809 9547316 -15165763 - L1M1 LINE L1 -6099 1466 1 388 149 103 0 chrY 9547308 9547395 -15165684 + L1 LINE L1 4847 4942 -1204 * 1643 190 10 26 chrY 9547694 9547999 -15165080 + AluJb SINE Alu 3 302 -10 816 65 0 0 chrY 9548462 9548569 -15164510 + (GAA)n Simple_repeat Simple_repeat 3 109 0 1756 102 3 89 chrY 9550556 9550849 -15162230 + AluY SINE Alu 26 293 -18 738 106 3 0 chrY 9551674 9551781 -15161298 - LTR12 LTR ERV1 -4 710 73 5049 104 121 8 chrY 9551781 9552523 -15160556 - LTR12 LTR ERV1 0 826 1 34020 105 8 16 chrY 9552523 9557410 -15155669 - HERV9 LTR ERV1 0 8399 3553 516 132 0 0 chrY 9557417 9557493 -15155586 - HERV9 LTR ERV1 -6740 1659 1584 * 21869 116 41 35 chrY 9557470 9560935 -15152144 - HERV9 LTR ERV1 -4833 3566 80 4864 131 136 0 chrY 9560935 9561934 -15151145 - pTR5 LTR ERV1 0 2606 1520 2469 164 69 70 chrY 9561945 9562343 -15150736 - MER4B LTR ERV1 -9 770 198 1329 244 3 13 chrY 9562343 9562651 -15150428 - AluJb SINE Alu -7 305 1 2469 164 69 70 chrY 9562651 9562849 -15150230 - MER4B LTR ERV1 -581 198 1 1013 177 0 6 chrY 9562849 9563013 -15150066 - MER4B-int LTR ERV1 0 6758 6596 9043 160 24 3 chrY 9563018 9564528 -15148551 - MER4B-int LTR ERV1 -558 6200 4659 2805 161 32 32 chrY 9564532 9565060 -15148019 - MER4D LTR ERV1 -250 622 95 5954 64 4 1 chrY 9565217 9565935 -15147144 + L1PA5 LINE L1 5435 6154 0 702 216 60 95 chrY 9565935 9566305 -15146774 + LTR23-int LTR ERV1 390 746 -4377 1691 168 100 29 chrY 9566526 9566866 -15146213 + THE1B LTR MaLR 1 364 0 9053 129 20 111 chrY 9566866 9567270 -15145809 + THE1B-int LTR MaLR 1 440 -1140 1129 144 40 0 chrY 9567270 9567443 -15145636 - AluSg/x SINE Alu -2 308 129 183 42 0 0 chrY 9567443 9567467 -15145612 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1986 141 0 0 chrY 9567467 9567750 -15145329 - AluY SINE Alu -28 283 1 9053 129 20 111 chrY 9567750 9568908 -15144171 + THE1B-int LTR MaLR 437 1580 0 2160 152 48 25 chrY 9568908 9569264 -15143815 + THE1B LTR MaLR 1 364 0 7363 58 3 0 chrY 9569604 9570666 -15142413 - L1PA4 LINE L1 -1 6154 5094 3603 128 0 0 chrY 9570682 9571204 -15141875 + HERVK14 LTR ERVK 1064 1585 -4360 19133 108 5 12 chrY 9571205 9574255 -15138824 + HERVK14 LTR ERVK 2107 5145 -800 2290 310 55 39 chrY 9574298 9576033 -15137046 + HERVK14 LTR ERVK 5616 7377 -40 2838 125 56 113 chrY 9576042 9576682 -15136397 + LTR14B LTR ERVK 5 608 0 761 166 22 17 chrY 9576684 9576865 -15136214 - L1PBa LINE L1 -3904 2945 2764 2608 163 11 17 chrY 9576879 9577340 -15135739 - LTR22A LTR ERVK 0 458 1 1047 181 0 0 chrY 9577340 9577522 -15135557 - HERVK22 LTR ERVK 0 6837 6656 * 18192 143 25 2 chrY 9577515 9580535 -15132544 - HERVK22 LTR ERVK -1502 5335 2248 5265 179 22 11 chrY 9580527 9581498 -15131581 - HERVK22 LTR ERVK -5856 981 1 * 2577 170 22 9 chrY 9581498 9581950 -15131129 - LTR22A LTR ERVK 0 458 1 2299 200 11 0 chrY 9581950 9582405 -15130674 + L1P3 LINE L1 472 931 -5530 1477 221 47 27 chrY 9582415 9583007 -15130072 - L1PBa LINE L1 -4582 2267 1664 4862 111 5 40 chrY 9583015 9583791 -15129288 - L1PA8 LINE L1 -8 6164 5416 1862 133 44 0 chrY 9583791 9584130 -15128949 + L1PA8 LINE L1 5050 5403 -743 1284 344 18 19 chrY 9584132 9584749 -15128330 - L1PBa LINE L1 -5181 1668 1053 1373 245 68 84 chrY 9584957 9585516 -15127563 + MLT2B3 LTR ERVL 5 554 0 4094 216 19 3 chrY 9585516 9586430 -15126649 + HERVL-B3 LTR ERVL 1 928 -4726 1125 211 65 4 chrY 9586422 9586682 -15126397 + HERVL-B3 LTR ERVL 1227 1502 -4152 * 3074 90 2 2 chrY 9586682 9587106 -15125973 + MER11D LTR ERVK 1 424 -473 932 205 9 47 chrY 9587154 9587369 -15125710 - LTR25 LTR ERV1 -344 450 244 383 173 0 13 chrY 9587392 9587467 -15125612 - LTR25 LTR ERV1 -501 293 220 2032 170 4 58 chrY 9587573 9588025 -15125054 + L1PA13 LINE L1 5539 5966 -197 247 250 0 0 chrY 9588022 9588102 -15124977 - L1 LINE L1 -1764 4382 4303 * 1970 186 35 2 chrY 9588105 9588509 -15124570 - MSTA LTR MaLR -4 424 8 881 245 95 11 chrY 9588511 9588973 -15124106 + LTR2 LTR ERV1 3 488 -2 5734 215 113 30 chrY 9588986 9589084 -15123995 - MSTA-int LTR MaLR 0 1651 1563 1483 223 0 7 chrY 9589084 9589367 -15123712 - AluJb SINE Alu -31 281 1 5734 215 113 30 chrY 9589367 9590792 -15122287 - MSTA-int LTR MaLR -88 1563 1 584 214 55 62 chrY 9590815 9590999 -15122080 + MLT2A2 LTR ERVL 293 453 0 10800 172 32 30 chrY 9591000 9593214 -15119865 + HERVL-A2 LTR ERVL 2 2220 -3434 5125 178 5 6 chrY 9593226 9594164 -15118915 + HERVL-B3 LTR ERVL 4718 5654 0 1553 229 38 83 chrY 9594164 9594744 -15118335 + MLT2B3 LTR ERVL 1 554 0 6078 208 41 32 chrY 9594745 9596199 -15116880 - MER66-int LTR ERV1 -3958 2718 1253 417 326 27 32 chrY 9596953 9597140 -15115939 - MER66-int LTR ERV1 -6091 585 400 270 238 12 36 chrY 9597145 9597229 -15115850 - MER66-int LTR ERV1 -6410 266 185 348 242 81 12 chrY 9597451 9597606 -15115473 - MER41B LTR ERV1 -242 350 142 349 227 21 21 chrY 9597740 9597837 -15115242 - L1ME3A LINE L1 -9 6161 6065 292 161 54 0 chrY 9597852 9597908 -15115171 - L1ME3A LINE L1 -157 6013 5955 870 242 90 20 chrY 9597967 9598391 -15114688 + MLT2B1 LTR ERVL 1 512 -8 398 295 57 19 chrY 9598396 9598606 -15114473 - L1ME3A LINE L1 -263 5907 5690 1613 159 30 15 chrY 9598634 9598898 -15114181 - AluSx SINE Alu -24 288 21 21 57 0 0 chrY 9598972 9599007 -15114072 + AT_rich Low_complexity Low_complexity 1 35 0 711 226 12 24 chrY 9599441 9599609 -15113470 + AluSg/x SINE Alu 139 304 -8 9717 197 29 22 chrY 9599899 9602371 -15110708 - L1PA13 LINE L1 -1 6162 3637 441 0 0 0 chrY 9602371 9602420 -15110659 + (TG)n Simple_repeat Simple_repeat 2 50 0 9717 197 29 22 chrY 9602420 9603193 -15109886 - L1PA13 LINE L1 -2526 3637 2871 1411 241 10 10 chrY 9603195 9603593 -15109486 - L1PA13 LINE L1 -3584 2562 2165 329 138 0 0 chrY 9603940 9603998 -15109081 + LTR69 LTR ERVL 193 250 -338 2086 98 4 0 chrY 9604051 9604352 -15108727 - AluY SINE Alu 0 318 17 2114 191 18 18 chrY 9604382 9604831 -15108248 - L1PA16 LINE L1 -9 6157 5709 54 84 0 0 chrY 9605296 9605427 -15107652 + AT_rich Low_complexity Low_complexity 1 131 0 1624 237 8 9 chrY 9605815 9606339 -15106740 + LTR69 LTR ERVL 4 588 0 585 250 69 0 chrY 9606346 9606506 -15106573 + MER77 LTR ERV1 427 597 -8 4722 235 60 12 chrY 9606837 9608043 -15105036 - ERVL-D LTR ERVL -1178 4586 3322 2939 243 82 32 chrY 9608039 9609052 -15104027 + ERVL LTR ERVL 2119 3182 -2582 * 1754 354 57 3 chrY 9609050 9609932 -15103147 - ERVL-D LTR ERVL -4467 1297 285 * 605 249 61 0 chrY 9610294 9610459 -15102620 - MLT2D LTR ERVL -60 354 180 21 36 0 0 chrY 9610475 9610503 -15102576 + AT_rich Low_complexity Low_complexity 1 28 0 2578 156 38 22 chrY 9610503 9611002 -15102077 - L1PB3 LINE L1 -3 6151 5645 1674 160 102 140 chrY 9611007 9611557 -15101522 - MER1A DNA MER1_type 0 529 1 1457 132 40 52 chrY 9611557 9611883 -15101196 - L1PB3 LINE L1 -514 5640 5319 2469 134 35 5 chrY 9611901 9612305 -15100774 - L1PA10 LINE L1 -11 6157 5742 459 129 0 12 chrY 9612314 9612399 -15100680 - L1PA10 LINE L1 -335 5833 5750 192 40 0 0 chrY 9612421 9612446 -15100633 + (TTTAA)n Simple_repeat Simple_repeat 3 27 0 5136 137 9 17 chrY 9612449 9612922 -15100157 - L1PA8 LINE L1 -31 6141 5666 450 32 0 32 chrY 9612922 9612984 -15100095 - L1PA4 LINE L1 -8 6147 6088 5136 137 9 17 chrY 9612984 9613728 -15099351 - L1PA8 LINE L1 -506 5666 4928 1103 241 18 3 chrY 9613715 9614043 -15099036 - L1PB3 LINE L1 -809 5337 5005 * 5211 133 50 7 chrY 9614100 9615116 -15097963 - L1PA10 LINE L1 -4 6164 5122 4180 79 8 36 chrY 9615121 9615738 -15097341 - L1PA7 LINE L1 -13 6141 5542 8314 183 33 26 chrY 9615743 9615983 -15097096 - L1PA10 LINE L1 -2208 3938 3701 390 57 0 0 chrY 9615983 9616036 -15097043 + (TTG)n Simple_repeat Simple_repeat 3 55 0 8314 183 33 26 chrY 9616036 9616475 -15096604 - L1PA10 LINE L1 -2445 3701 3267 201 39 0 0 chrY 9616475 9616501 -15096578 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 8314 183 33 26 chrY 9616501 9617525 -15095554 - L1PA10 LINE L1 -2879 3267 2216 2847 16 0 0 chrY 9617525 9617837 -15095242 - AluYb8 SINE Alu -6 312 1 8314 183 33 26 chrY 9617837 9618086 -15094993 - L1PA10 LINE L1 -3930 2216 1970 3144 105 58 14 chrY 9618099 9618585 -15094494 - L1PA10 LINE L1 -5638 508 2 886 200 54 0 chrY 9618588 9618904 -15094175 - L1P4 LINE L1 -682 5483 5156 682 194 59 6 chrY 9618905 9619075 -15094004 + L1PA13 LINE L1 5967 6145 -18 3459 221 43 10 chrY 9619076 9620807 -15092272 + L1PA16 LINE L1 4376 6166 0 2156 255 37 4 chrY 9620900 9621610 -15091469 + L1 LINE L1 2224 2956 -3190 3583 173 29 51 chrY 9621610 9622379 -15090700 - LTR25 LTR ERV1 -23 771 20 5265 176 13 37 chrY 9622380 9623656 -15089423 - LTR25-int LTR ERV1 -50 6946 5641 2106 138 0 3 chrY 9623656 9623953 -15089126 - AluSg SINE Alu -14 296 1 5265 176 13 37 chrY 9623953 9624005 -15089074 - LTR25-int LTR ERV1 -1355 5641 2934 40158 38 23 1 chrY 9624005 9630025 -15083054 + L1PA2 LINE L1 4 6155 0 19821 189 41 54 chrY 9630029 9631195 -15081884 - LTR25-int LTR ERV1 -1281 5715 4535 2347 92 0 13 chrY 9631195 9631500 -15081579 - AluY SINE Alu -10 301 1 19821 189 41 54 chrY 9631500 9635234 -15077845 - LTR25-int LTR ERV1 -2461 4535 922 1898 151 0 7 chrY 9635234 9635554 -15077525 + AluY SINE Alu 3 311 0 19821 189 41 54 chrY 9635554 9636201 -15076878 - LTR25-int LTR ERV1 -6074 922 268 595 230 24 85 chrY 9636222 9636470 -15076609 - LTR12 LTR ERV1 -251 463 231 315 154 77 0 chrY 9636800 9636865 -15076214 - LTR25-int LTR ERV1 -6914 82 13 3578 184 35 57 chrY 9636865 9637061 -15076018 - LTR25 LTR ERV1 0 794 595 1962 130 0 14 chrY 9637061 9637375 -15075704 - AluSc SINE Alu 0 310 1 3578 184 35 57 chrY 9637375 9637989 -15075090 - LTR25 LTR ERV1 -199 595 1 3951 174 38 8 chrY 9637989 9639497 -15073582 + L1M1 LINE L1 2989 5797 -507 806 262 93 54 chrY 9639499 9639908 -15073171 - MLT1D LTR MaLR 0 505 81 1949 163 0 0 chrY 9640011 9640311 -15072768 - AluSg SINE Alu -10 300 1 1987 159 0 0 chrY 9640685 9640974 -15072105 + AluSc SINE Alu 1 289 -20 634 178 15 44 chrY 9641234 9641369 -15071710 - FLAM_C SINE Alu -1 132 2 2104 255 55 49 chrY 9641777 9642806 -15070273 + L1M4 LINE L1 3914 4949 -1197 256 59 0 0 chrY 9642883 9642917 -15070162 + (TG)n Simple_repeat Simple_repeat 1 34 0 302 153 17 0 chrY 9642917 9642976 -15070103 + (TA)n Simple_repeat Simple_repeat 1 60 0 362 255 0 21 chrY 9642976 9643070 -15070009 + L1MC4 LINE L1 6612 6703 -1339 213 39 0 0 chrY 9643109 9643135 -15069944 + (TA)n Simple_repeat Simple_repeat 1 26 0 1867 168 3 0 chrY 9643136 9643422 -15069657 - AluSx SINE Alu -25 287 1 11220 233 19 33 chrY 9643462 9644456 -15068623 - L1PA13 LINE L1 -923 5874 4867 3722 151 23 97 chrY 9644456 9645313 -15067766 + LTR25 LTR ERV1 1 794 0 11220 233 19 33 chrY 9645313 9647318 -15065761 - L1PA13 LINE L1 -1930 4867 2929 3540 22 5 0 chrY 9647318 9647756 -15065323 + L1PA3 LINE L1 5723 6162 0 11220 233 19 33 chrY 9647756 9648196 -15064883 - L1PA13 LINE L1 -3868 2929 2484 1933 122 0 0 chrY 9648201 9648456 -15064623 + AluSg SINE Alu 1 255 -55 5225 206 23 16 chrY 9648467 9649569 -15063510 - L1PA13 LINE L1 -4594 2193 1085 2815 255 174 7 chrY 9649571 9650419 -15062660 - L1PA13 LINE L1 -5740 1047 58 1525 131 25 29 chrY 9650441 9650716 -15062363 - THE1C LTR MaLR -21 354 81 1741 258 73 34 chrY 9650806 9651014 -15062065 - L1PA15-16 LINE L1 -3147 4437 4239 2443 128 8 13 chrY 9651014 9651388 -15061691 + THE1C LTR MaLR 4 375 0 1741 258 73 34 chrY 9651388 9652015 -15061064 - L1PA15-16 LINE L1 -3345 4239 3569 26985 130 17 57 chrY 9652031 9658427 -15054652 + L1PA7 LINE L1 12 6141 -13 31 26 0 0 chrY 9658440 9658478 -15054601 + AT_rich Low_complexity Low_complexity 1 38 0 307 125 156 0 chrY 9658492 9658556 -15054523 - THE1-int LTR MaLR -1018 562 489 2203 202 82 12 chrY 9658591 9659185 -15053894 - L1PA15-16 LINE L1 -3989 3595 2960 39891 43 22 3 chrY 9659243 9665279 -15047800 - L1PA3 LINE L1 -2 6153 4 2337 203 51 19 chrY 9665279 9665980 -15047099 - L1PA15-16 LINE L1 -4600 2984 2131 225 350 10 10 chrY 9666620 9666723 -15046356 - L1M2 LINE L1 -5783 1066 964 761 311 60 8 chrY 9667467 9667837 -15045242 - L1PA15-16 LINE L1 -7191 390 2 227 138 73 55 chrY 9667844 9667953 -15045126 - L1 LINE L1 -2876 4689 4579 1690 267 42 2 chrY 9667973 9668572 -15044507 - L1 LINE L1 -3264 4301 3679 1184 206 21 18 chrY 9668574 9668860 -15044219 + MER65A LTR ERV1 1 287 -158 33975 82 21 5 chrY 9668868 9674890 -15038189 + L1PA5 LINE L1 11 6173 0 300 176 71 24 chrY 9674894 9674979 -15038100 + MER65A LTR ERV1 280 368 -77 941 269 161 20 chrY 9675023 9675708 -15037371 - L1 LINE L1 -3891 3674 2894 * 2268 244 63 120 chrY 9675704 9677173 -15035906 - L1 LINE L1 -5645 1844 460 1184 270 65 0 chrY 9677192 9677637 -15035442 - L1M4 LINE L1 -1776 4370 3897 24 41 0 20 chrY 9677688 9677709 -15035370 + AT_rich Low_complexity Low_complexity 1 21 -27 1943 144 3 3 chrY 9677709 9678001 -15035078 + AluY SINE Alu 1 292 -19 24 41 0 20 chrY 9678001 9678028 -15035051 + AT_rich Low_complexity Low_complexity 21 48 0 2145 179 114 65 chrY 9678065 9678390 -15034689 - L1MA8 LINE L1 -4 6287 5979 1816 136 3 65 chrY 9678390 9678564 -15034515 - AluSx SINE Alu -21 291 143 2104 105 3 33 chrY 9678564 9678869 -15034210 - AluSg SINE Alu -14 296 1 1816 136 3 65 chrY 9678869 9679002 -15034077 - AluSx SINE Alu -169 143 3 2145 179 114 65 chrY 9679002 9679336 -15033743 - L1MA8 LINE L1 -312 5979 5596 11206 215 40 27 chrY 9679900 9684263 -15028816 - L1PB2 LINE L1 -2 6206 1996 2191 108 0 3 chrY 9684263 9684558 -15028521 + AluY SINE Alu 3 296 -15 11206 215 40 27 chrY 9684558 9686581 -15026498 - L1PB2 LINE L1 -4212 1996 1 355 302 54 24 chrY 9786650 9786855 -14926224 - HAL1b LINE L1 -490 858 648 40372 54 2 2 chrY 9786889 9793046 -14920033 - L1PA3 LINE L1 0 6155 1 999 95 0 0 chrY 9793050 9793187 -14919892 - AluY SINE Alu -16 295 159 346 329 34 30 chrY 9793449 9793683 -14919396 - HAL1b LINE L1 -854 494 260 1592 158 4 0 chrY 9793724 9793964 -14919115 - AluSx SINE Alu -14 298 58 21 0 0 0 chrY 9796191 9796212 -14916867 + AT_rich Low_complexity Low_complexity 1 21 0 2151 121 16 22 chrY 9796524 9796903 -14916176 - AluSx SINE Alu 0 377 1 1579 203 16 3 chrY 9798763 9799069 -14914010 + AluJo SINE Alu 3 312 0 2277 109 0 0 chrY 9800310 9800612 -14912467 - AluY SINE Alu -9 302 1 1589 150 3 92 chrY 9800619 9800794 -14912285 - AluSx SINE Alu -15 297 163 297 0 0 0 chrY 9800794 9800827 -14912252 + (TG)n Simple_repeat Simple_repeat 2 34 0 1589 150 3 92 chrY 9800827 9800977 -14912102 - AluSx SINE Alu -149 163 1 3190 155 11 19 chrY 9801104 9801634 -14911445 - MER1A DNA MER1_type 0 527 2 1294 204 74 11 chrY 9803314 9803583 -14909496 + AluJo SINE Alu 1 286 -26 2083 142 0 3 chrY 9803910 9804206 -14908873 - AluSg SINE Alu -11 299 5 36 40 0 0 chrY 9804474 9804524 -14908555 + AT_rich Low_complexity Low_complexity 1 50 0 216 158 0 0 chrY 9804673 9804711 -14908368 + (TATG)n Simple_repeat Simple_repeat 3 40 0 2012 159 0 0 chrY 9804723 9805012 -14908067 - AluSq SINE Alu -24 289 1 208 143 0 0 chrY 9809806 9809841 -14903238 + (A)n Simple_repeat Simple_repeat 1 35 0 303 104 0 0 chrY 9810888 9810936 -14902143 + (CA)n Simple_repeat Simple_repeat 1 48 0 186 43 0 0 chrY 9813559 9813582 -14899497 + (TTTTC)n Simple_repeat Simple_repeat 3 25 0 502 156 16 66 chrY 9814498 9814548 -14898531 - L1MB7 LINE L1 -10 6174 6123 8943 44 3 0 chrY 9814548 9815616 -14897463 + MER11C LTR ERVK 1 1071 0 502 156 16 66 chrY 9815616 9815687 -14897392 - L1MB7 LINE L1 -61 6123 6059 1914 102 0 0 chrY 9815689 9815954 -14897125 - AluY SINE Alu -5 306 42 220 302 63 38 chrY 9816244 9816403 -14896676 + L2 LINE L2 2366 2528 -786 547 344 59 60 chrY 9816601 9817287 -14895792 + L2 LINE L2 2637 3311 -2 276 281 50 22 chrY 9817386 9817525 -14895554 + L1MB7 LINE L1 6033 6175 -9 863 229 14 62 chrY 9819053 9819345 -14893734 - LTR4 LTR ERV1 -2 594 317 406 282 18 47 chrY 9819547 9819717 -14893362 - LTR4 LTR ERV1 -396 200 36 216 0 0 0 chrY 9820891 9820915 -14892164 + (T)n Simple_repeat Simple_repeat 1 24 0 208 224 17 35 chrY 9821981 9822039 -14891040 + MIR SINE MIR 113 169 -93 1024 229 0 0 chrY 9822133 9822343 -14890736 + MER58A DNA MER1_type 1 210 -14 222 305 24 24 chrY 9822533 9822615 -14890464 + MIR SINE MIR 60 141 -67 327 203 0 0 chrY 9822716 9822785 -14890294 + (TATATG)n Simple_repeat Simple_repeat 2 70 0 1609 209 13 13 chrY 9823100 9823411 -14889668 - AluJo SINE Alu -1 311 1 524 233 7 67 chrY 9824175 9824325 -14888754 - L2 LINE L2 -1 3312 3172 1991 154 64 29 chrY 9824346 9824860 -14888219 - MLT2A2 LTR ERVL 0 554 1 1642 265 133 42 chrY 9824957 9825946 -14887133 - L2 LINE L2 -281 3032 1959 3250 138 11 18 chrY 9826257 9826808 -14886271 + L1PA10 LINE L1 5606 6152 -16 1601 204 3 7 chrY 9827798 9828097 -14884982 - AluJb SINE Alu -10 302 5 43257 104 36 30 chrY 9828640 9836886 -14876193 + HERV9 LTR ERV1 17 6550 0 7376 119 103 15 chrY 9836886 9838959 -14874120 + HERV9 LTR ERV1 506 8399 0 367 296 52 9 chrY 9839174 9839289 -14873790 - L2 LINE L2 -5 3308 3189 2282 123 0 0 chrY 9839713 9840023 -14873056 - AluSq SINE Alu -3 310 1 300 393 15 15 chrY 9840449 9840584 -14872495 - L2 LINE L2 0 3272 3138 1226 214 81 27 chrY 9840745 9841115 -14871964 + MLT1D LTR MaLR 116 505 0 202 243 54 63 chrY 9841117 9841228 -14871851 - MIR SINE MIR -68 194 85 190 253 41 153 chrY 9841671 9841810 -14871269 + L2 LINE L2 2855 3008 -305 610 247 79 0 chrY 9841810 9842000 -14871079 - MER3 DNA MER1_type -4 205 1 190 253 41 153 chrY 9842000 9842148 -14870931 + L2 LINE L2 3008 3079 -234 2337 71 6 46 chrY 9842148 9842474 -14870605 - AluSq SINE Alu 0 313 1 190 253 41 153 chrY 9842474 9842624 -14870455 + L2 LINE L2 3079 3244 -69 315 0 0 0 chrY 9845806 9845841 -14867238 + (CA)n Simple_repeat Simple_repeat 2 36 0 605 234 9 0 chrY 9845849 9845960 -14867119 - FLAM_A SINE Alu -30 112 1 840 173 0 0 chrY 9847251 9847384 -14865695 + FLAM_C SINE Alu 1 133 0 187 256 44 7 chrY 9849500 9849637 -14863442 + CT-rich Low_complexity Low_complexity 3 144 0 40263 53 3 4 chrY 9850239 9856384 -14856695 + L1PA3 LINE L1 13 6152 -3 297 219 0 0 chrY 9858046 9858119 -14854960 + (CATATA)n Simple_repeat Simple_repeat 4 76 0 39 22 0 0 chrY 9859049 9859095 -14853984 + AT_rich Low_complexity Low_complexity 1 46 0 28 29 0 0 chrY 9859206 9859241 -14853838 + AT_rich Low_complexity Low_complexity 1 35 0 1020 184 38 19 chrY 9859829 9860041 -14853038 - MER20 DNA MER1_type -3 216 1 299 80 27 27 chrY 9860442 9860517 -14852562 + (TATAA)n Simple_repeat Simple_repeat 5 79 0 741 178 7 30 chrY 9861029 9861164 -14851915 + FLAM_A SINE Alu 1 132 -1 1386 177 17 27 chrY 9861662 9861962 -14851117 - L1PB4 LINE L1 -76 6080 5784 1284 146 46 13 chrY 9861961 9862200 -14850879 + L1PB4 LINE L1 5519 5765 -391 * 2115 98 103 59 chrY 9862211 9862620 -14850459 - LTR49 LTR ERV1 -168 427 1 1567 175 52 14 chrY 9863152 9863443 -14849636 + AluJo SINE Alu 1 302 -10 194 277 198 10 chrY 9863481 9863582 -14849497 + MIR SINE MIR 101 220 -42 234 0 0 0 chrY 9863586 9863612 -14849467 + (TG)n Simple_repeat Simple_repeat 2 27 0 5609 128 10 2 chrY 9863629 9864695 -14848384 + L1PA13 LINE L1 5098 6163 0 1003 144 27 78 chrY 9865348 9865605 -14847474 - L1MD2 LINE L1 0 6359 6116 305 345 71 18 chrY 9866148 9866316 -14846763 + MER5B DNA MER1_type 1 177 -1 443 307 74 62 chrY 9867017 9867166 -14845913 - MIR SINE MIR -4 258 112 1901 124 22 0 chrY 9867166 9867440 -14845639 + AluSx SINE Alu 1 280 -32 252 0 0 0 chrY 9867440 9867468 -14845611 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 443 307 74 62 chrY 9867468 9867561 -14845518 - MIR SINE MIR -149 113 12 275 228 17 56 chrY 9867646 9867826 -14845253 + (TA)n Simple_repeat Simple_repeat 1 173 0 * 283 203 51 45 chrY 9867761 9867938 -14845141 + (TATATG)n Simple_repeat Simple_repeat 3 180 0 206 318 15 15 chrY 9868070 9868136 -14844943 - MER5B DNA MER1_type -111 67 2 21 0 0 0 chrY 9868831 9868852 -14844227 + AT_rich Low_complexity Low_complexity 1 21 0 277 279 0 13 chrY 9869136 9869215 -14843864 + Charlie2 DNA MER1_type 369 446 -2416 2110 109 7 33 chrY 9869887 9870191 -14842888 - AluSg SINE Alu -14 296 1 312 250 29 70 chrY 9870827 9871099 -14841980 - Charlie7 DNA MER1_type -3 2609 2349 595 332 52 13 chrY 9871122 9871505 -14841574 - Charlie7 DNA MER1_type -1898 714 317 210 191 21 0 chrY 9872352 9872399 -14840680 + T-rich Low_complexity Low_complexity 5 52 0 238 146 0 0 chrY 9873033 9873074 -14840005 - MLT1K LTR MaLR -64 524 484 332 164 15 0 chrY 9874201 9874268 -14838811 + CT-rich Low_complexity Low_complexity 2 69 0 1708 201 3 6 chrY 9874271 9874584 -14838495 - AluJo SINE Alu 0 312 1 2650 137 8 81 chrY 9874593 9875059 -14838020 + MER4B LTR ERV1 1 576 -203 183 42 0 0 chrY 9875059 9875083 -14837996 + (TTATG)n Simple_repeat Simple_repeat 1 24 0 2650 137 8 81 chrY 9875083 9875274 -14837805 + MER4B LTR ERV1 576 779 0 306 0 0 0 chrY 9875716 9875750 -14837329 + (CA)n Simple_repeat Simple_repeat 2 35 0 990 299 115 56 chrY 9875783 9877138 -14835941 - L1M4 LINE L1 -1692 4454 3019 219 316 7 22 chrY 9877416 9877466 -14835613 + (CATATA)n Simple_repeat Simple_repeat 1 50 -87 1963 155 0 7 chrY 9877466 9877763 -14835316 + AluSx SINE Alu 1 295 -17 219 316 7 22 chrY 9877763 9877851 -14835228 + (CATATA)n Simple_repeat Simple_repeat 50 137 0 570 310 57 62 chrY 9877878 9878317 -14834762 + LTR16C LTR ERVL 51 487 -4 22 0 0 0 chrY 9879512 9879534 -14833545 + AT_rich Low_complexity Low_complexity 1 22 0 1254 95 0 0 chrY 9879784 9879964 -14833115 + (TTTC)n Simple_repeat Simple_repeat 1 359 0 1254 95 0 0 chrY 9879964 9880143 -14832936 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 1252 151 31 9 chrY 9880376 9880601 -14832478 + MER30 DNA MER1_type 1 230 0 2211 92 20 7 chrY 9881351 9881712 -14831367 + AluSp SINE Alu 1 313 0 606 281 120 43 chrY 9883772 9884239 -14828840 + MLT1F1 LTR MaLR 60 562 -5 3223 164 10 92 chrY 9884239 9884508 -14828571 - MER44D DNA MER2_type -1882 705 416 2357 94 32 29 chrY 9884508 9884882 -14828197 + THE1C LTR MaLR 1 375 0 3223 164 10 92 chrY 9884882 9885380 -14827699 - MER44D DNA MER2_type -2171 416 1 275 261 25 84 chrY 9885690 9885773 -14827306 + MIR SINE MIR 80 157 -105 2379 49 0 3 chrY 9885773 9886086 -14826993 + AluY SINE Alu 1 312 0 275 261 25 84 chrY 9886086 9886120 -14826959 + MIR SINE MIR 157 191 -71 203 133 0 0 chrY 9886818 9886848 -14826231 + (TC)n Simple_repeat Simple_repeat 1 30 0 214 301 0 55 chrY 9887879 9887952 -14825127 + L3 LINE CR1 888 956 -621 1556 203 13 23 chrY 9888113 9888413 -14824666 - AluJo SINE Alu -11 301 5 409 309 164 35 chrY 9888546 9888863 -14824216 + L3 LINE CR1 1112 1469 -108 1313 259 73 77 chrY 9889416 9890295 -14822784 + L1MC4 LINE L1 7048 7922 -120 659 182 0 28 chrY 9890402 9890583 -14822496 + (CAGA)n Simple_repeat Simple_repeat 2 177 0 288 130 0 0 chrY 9890617 9890663 -14822416 + (TAGG)n Simple_repeat Simple_repeat 2 47 0 752 173 6 0 chrY 9890664 9890843 -14822236 + (CAGA)n Simple_repeat Simple_repeat 1 180 0 238 77 32 0 chrY 9890844 9890911 -14822168 + (TAGA)n Simple_repeat Simple_repeat 1 69 0 1842 130 11 4 chrY 9890918 9891179 -14821900 + AluSq SINE Alu 1 263 -50 186 103 0 0 chrY 9891190 9891219 -14821860 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 316 242 33 50 chrY 9891234 9891354 -14821725 + L1MC4 LINE L1 7925 8042 0 900 46 33 13 chrY 9892256 9892408 -14820671 + (TTTC)n Simple_repeat Simple_repeat 2 156 0 1960 143 0 13 chrY 9892411 9892711 -14820368 - AluSg SINE Alu -14 296 1 39996 57 1 1 chrY 9892792 9898940 -14814139 + L1PA2 LINE L1 10 6155 0 351 287 143 42 chrY 9898954 9899139 -14813940 + L1MEc LINE L1 1848 2069 -4327 2308 92 7 0 chrY 9899139 9899431 -14813648 - AluSp SINE Alu -19 294 1 351 287 143 42 chrY 9899431 9899510 -14813569 + L1MEc LINE L1 2069 2139 -4257 552 100 0 0 chrY 9899583 9899663 -14813416 + MADE1 DNA Mariner 1 80 0 569 174 8 8 chrY 9899670 9899791 -14813288 + MLT2B2 LTR ERVL 1 121 -394 1924 131 81 0 chrY 9900189 9900472 -14812607 + AluSg SINE Alu 5 310 0 1859 134 87 0 chrY 9900815 9901090 -14811989 - AluSx SINE Alu -13 299 1 208 256 0 0 chrY 9902280 9902323 -14810756 + A-rich Low_complexity Low_complexity 3 45 0 211 336 62 31 chrY 9903504 9903632 -14809447 + MIR SINE MIR 130 261 -1 351 0 0 0 chrY 9903851 9903890 -14809189 + (T)n Simple_repeat Simple_repeat 1 39 0 1925 172 18 18 chrY 9904332 9904733 -14808346 - L1PA16 LINE L1 -2 6164 5764 373 177 0 13 chrY 9904735 9904814 -14808265 - L1P4 LINE L1 -356 5810 5733 343 152 0 0 chrY 9905134 9905200 -14807879 + L1P5 LINE L1 5594 5659 -492 1684 194 0 0 chrY 9905976 9906265 -14806814 + AluJb SINE Alu 1 289 -23 1784 152 9 43 chrY 9906329 9906652 -14806427 + AluJo SINE Alu 1 312 0 23 0 0 0 chrY 9906752 9906775 -14806304 + AT_rich Low_complexity Low_complexity 1 23 0 324 292 19 19 chrY 9906809 9906963 -14806116 + L1MEd LINE L1 1292 1445 -4971 363 265 74 33 chrY 9906963 9907233 -14805846 + L1MEd LINE L1 1300 1662 -4840 1179 247 63 28 chrY 9907244 9907356 -14805723 + L1MEd LINE L1 2837 2944 -3482 2007 143 14 51 chrY 9907356 9907706 -14805373 + MER1B DNA MER1_type 1 337 0 1179 247 63 28 chrY 9907706 9908264 -14804815 + L1MEd LINE L1 2944 3530 -2896 208 182 0 45 chrY 9908273 9908317 -14804762 + GA-rich Low_complexity Low_complexity 1 42 0 29708 40 4 1 chrY 9908340 9912944 -14800135 - L1PA3 LINE L1 -3 6152 1539 4897 84 6 1 chrY 9912953 9913647 -14799432 - L1PA3 LINE L1 -5448 698 2 624 268 168 68 chrY 9913698 9914490 -14798589 + L1MEd LINE L1 3617 4329 -2097 2835 125 9 21 chrY 9914490 9914923 -14798156 - MSTA LTR MaLR 0 428 1 624 268 168 68 chrY 9914923 9914955 -14798124 + L1MEd LINE L1 4329 4356 -2070 368 170 11 21 chrY 9914955 9915049 -14798030 - L1PB1 LINE L1 0 6151 6059 624 268 168 68 chrY 9915049 9915148 -14797931 + L1MEd LINE L1 4356 4444 -1982 1518 72 5 0 chrY 9915148 9915355 -14797724 + L1MA1 LINE L1 6095 6302 0 624 268 168 68 chrY 9915355 9915730 -14797349 + L1MEd LINE L1 4444 5046 -1380 1792 134 33 18 chrY 9916469 9916804 -14796275 - L1MA5A LINE L1 -4 6293 5954 284 166 96 118 chrY 9916932 9917119 -14795960 + MER53 DNA DNA 1 183 -6 240 279 39 16 chrY 9917129 9917258 -14795821 + L1ME2 LINE L1 676 807 -5609 479 316 46 28 chrY 9917526 9917811 -14795268 + L1ME2 LINE L1 5290 5579 -847 1603 268 60 27 chrY 9917831 9918526 -14794553 + L1ME2 LINE L1 5620 6337 -107 2477 106 11 0 chrY 9918620 9918969 -14794110 + THE1A LTR MaLR 1 353 -2 604 94 0 10 chrY 9918971 9919067 -14794012 + THE1A-int LTR MaLR 1 95 -1485 309 310 13 77 chrY 9919400 9919555 -14793524 + L1MC5 LINE L1 7757 7901 -60 1062 154 39 5 chrY 9919608 9919816 -14793263 + L1MB1 LINE L1 5842 6056 -133 1624 177 59 33 chrY 9919817 9920354 -14792725 - MLT2A2 LTR ERVL -6 548 1 387 233 0 33 chrY 9920356 9920476 -14792603 + L1MB1 LINE L1 6053 6168 0 308 302 166 18 chrY 9920542 9920711 -14792368 + MIR3 SINE MIR 1 194 -14 355 197 0 0 chrY 9920764 9920825 -14792254 + L2 LINE L2 3210 3270 -2 1293 280 57 18 chrY 9921549 9921828 -14791251 + MLT2B2 LTR ERVL 1 309 -206 2070 66 69 7 chrY 9921828 9922102 -14790977 - AluY SINE Alu -20 291 1 1293 280 57 18 chrY 9922102 9922318 -14790761 + MLT2B2 LTR ERVL 309 515 0 21 0 0 0 chrY 9923485 9923506 -14789573 + AT_rich Low_complexity Low_complexity 1 21 0 350 232 31 9 chrY 9924385 9924713 -14788366 + (TA)n Simple_repeat Simple_repeat 1 335 0 320 183 29 0 chrY 9924994 9925131 -14787948 + (TA)n Simple_repeat Simple_repeat 1 141 0 188 198 28 9 chrY 9925179 9925285 -14787794 + (TA)n Simple_repeat Simple_repeat 1 108 0 294 295 0 25 chrY 9925774 9925896 -14787183 + CT-rich Low_complexity Low_complexity 1 119 0 184 241 0 29 chrY 9925908 9926078 -14787001 + CT-rich Low_complexity Low_complexity 1 165 0 420 241 0 58 chrY 9926116 9926307 -14786772 + CT-rich Low_complexity Low_complexity 1 180 0 312 211 0 33 chrY 9926323 9926503 -14786576 + CT-rich Low_complexity Low_complexity 4 177 0 241 236 0 30 chrY 9926541 9926706 -14786373 + CT-rich Low_complexity Low_complexity 2 161 0 22 0 0 0 chrY 9927611 9927633 -14785446 + GC_rich Low_complexity Low_complexity 1 22 0 423 0 0 0 chrY 9928172 9928219 -14784860 + (TG)n Simple_repeat Simple_repeat 2 48 0 293 220 28 73 chrY 9928273 9928382 -14784697 - MLT2C1 LTR ERVL -34 363 260 1225 210 38 10 chrY 9928382 9928859 -14784220 + L1M2 LINE L1 5158 5718 -582 304 222 56 11 chrY 9929976 9930066 -14783013 - L1MB3 LINE L1 -3 6180 6087 * 3964 177 38 52 chrY 9930062 9931082 -14781997 - L1MA4 LINE L1 -280 6020 4987 314 73 0 18 chrY 9931082 9931137 -14781942 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 3964 177 38 52 chrY 9931137 9931152 -14781927 - L1MA4 LINE L1 -1313 4987 4973 1702 144 4 22 chrY 9931152 9931430 -14781649 - AluSx SINE Alu -39 273 1 3964 177 38 52 chrY 9931430 9931956 -14781123 - L1MA4 LINE L1 -1327 4973 4490 1509 174 33 7 chrY 9932059 9932335 -14780744 + Tigger1 DNA MER2_type 1 283 -2135 374 150 57 0 chrY 9932343 9932438 -14780641 + L1 LINE L1 4711 4813 -1333 * 695 183 7 39 chrY 9932412 9932565 -14780514 + L1M1 LINE L1 18 165 -7400 1532 77 0 0 chrY 9932572 9932767 -14780312 + THE1A LTR MaLR 1 195 -160 291 324 14 7 chrY 9933257 9933399 -14779680 - HERV17 LTR ERV1 -2164 6462 6320 1041 166 0 52 chrY 9933447 9933658 -14779421 - AluSg/x SINE Alu 0 310 111 323 170 0 0 chrY 9933674 9933727 -14779352 + L1M1 LINE L1 113 165 -7400 617 116 0 0 chrY 9933734 9933820 -14779259 + THE1A LTR MaLR 1 86 -269 512 245 49 86 chrY 9933828 9934073 -14779006 - MER84-int LTR ERV1 -1561 4968 4733 889 315 54 47 chrY 9934484 9935741 -14777338 - MER84-int LTR ERV1 -1114 3840 3304 1075 229 16 12 chrY 9935741 9935994 -14777085 + AluJo SINE Alu 55 308 -4 227 308 44 22 chrY 9936118 9936209 -14776870 - MIR SINE MIR -118 144 52 1986 71 114 11 chrY 9936530 9936810 -14776269 - AluSc SINE Alu 0 309 1 701 23 11 0 chrY 9937781 9937868 -14775211 + (TTTTC)n Simple_repeat Simple_repeat 3 90 0 428 143 114 0 chrY 9938148 9938218 -14774861 + MADE1 DNA Mariner 1 78 -2 204 218 13 77 chrY 9938599 9938677 -14774402 - L2 LINE L2 -78 3235 3163 1396 241 59 25 chrY 9939145 9939217 -14773862 - L1MB7 LINE L1 -14 6170 6102 1662 171 52 80 chrY 9939217 9939603 -14773476 - THE1C LTR MaLR 0 375 1 1396 241 59 25 chrY 9939603 9939973 -14773106 - L1MB7 LINE L1 -82 6102 5713 27 0 0 0 chrY 9940153 9940180 -14772899 + AT_rich Low_complexity Low_complexity 1 27 0 905 301 114 17 chrY 9940260 9940735 -14772344 - L1MC4 LINE L1 -140 7902 7382 8462 71 148 10 chrY 9941363 9942569 -14770510 - SVA Other Other -7 1379 8 189 0 0 0 chrY 9942579 9942600 -14770479 + (GGGAGA)n Simple_repeat Simple_repeat 5 25 0 815 204 22 11 chrY 9942665 9942846 -14770233 - MER20 DNA MER1_type -6 213 31 222 37 0 0 chrY 9943337 9943364 -14769715 + (TG)n Simple_repeat Simple_repeat 2 28 0 24 32 0 0 chrY 9943364 9943395 -14769684 + AT_rich Low_complexity Low_complexity 1 31 0 885 161 0 0 chrY 9943395 9943654 -14769425 + (TA)n Simple_repeat Simple_repeat 1 259 0 302 292 22 0 chrY 9943656 9943745 -14769334 - L1MC4 LINE L1 -1337 6705 6615 30 0 0 0 chrY 9943745 9943775 -14769304 + AT_rich Low_complexity Low_complexity 1 30 0 1931 147 0 0 chrY 9944278 9944602 -14768477 - AluSc SINE Alu 0 326 3 198 0 0 0 chrY 9944604 9944626 -14768453 + (T)n Simple_repeat Simple_repeat 1 22 0 198 0 0 0 chrY 9945457 9945479 -14767600 + (A)n Simple_repeat Simple_repeat 1 22 0 980 206 34 0 chrY 9945854 9946058 -14767021 - MER20 DNA MER1_type -8 211 1 23 0 0 0 chrY 9946724 9946747 -14766332 + AT_rich Low_complexity Low_complexity 1 23 0 2143 62 3 31 chrY 9946775 9947067 -14766012 + AluY SINE Alu 20 303 -8 2522 58 0 6 chrY 9947081 9947394 -14765685 + AluY SINE Alu 1 311 0 1722 229 176 62 chrY 9947429 9948067 -14765012 - L1MC4 LINE L1 -140 7902 7149 1590 177 7 10 chrY 9948067 9948355 -14764724 - AluJo SINE Alu 0 312 26 1722 229 176 62 chrY 9948355 9948535 -14764544 - L1MC4 LINE L1 -893 7149 6991 483 63 0 0 chrY 9949044 9949107 -14763972 + (TTTC)n Simple_repeat Simple_repeat 2 64 0 362 283 178 13 chrY 9950373 9950525 -14762554 - MER5B DNA MER1_type 0 178 2 233 209 0 0 chrY 9950581 9950624 -14762455 + (TG)n Simple_repeat Simple_repeat 2 44 0 193 356 0 0 chrY 9951106 9951165 -14761914 - MIR SINE MIR -71 137 79 533 169 90 0 chrY 9951485 9951574 -14761505 + AluJ/FLAM SINE Alu 3 99 -213 619 204 7 63 chrY 9951575 9951717 -14761362 + FRAM SINE Alu 1 40 0 420 138 0 15 chrY 9951813 9951878 -14761201 + MER20 DNA MER1_type 2 65 -154 22 0 0 0 chrY 9952144 9952166 -14760913 + AT_rich Low_complexity Low_complexity 1 22 0 282 274 34 0 chrY 9952675 9952767 -14760312 + MLT2C1 LTR ERVL 124 194 -203 211 222 0 37 chrY 9952768 9952822 -14760257 + GA-rich Low_complexity Low_complexity 2 53 0 249 294 87 48 chrY 9952822 9952948 -14760131 + MLT2C1 LTR ERVL 212 342 -55 261 233 151 0 chrY 9953003 9953076 -14760003 - MLT2C1 LTR ERVL -296 101 18 1149 139 42 28 chrY 9953081 9953297 -14759782 - THE1C LTR MaLR -156 219 1 352 305 61 12 chrY 9953321 9953485 -14759594 - L1 LINE L1 -1793 4353 4182 42983 39 26 2 chrY 9953496 9959500 -14753579 + L1PA2 LINE L1 3 6155 0 1867 112 0 83 chrY 9960035 9960348 -14752731 - AluSc SINE Alu -22 287 1 319 154 0 31 chrY 9961298 9961363 -14751716 - MLT2B1 LTR ERVL 0 520 458 809 109 36 0 chrY 9961380 9961545 -14751534 + (TAGA)n Simple_repeat Simple_repeat 2 172 0 1848 224 30 74 chrY 9961602 9962143 -14750936 - MLT2B3 LTR ERVL -20 534 18 244 330 52 17 chrY 9962722 9962837 -14750242 + L2 LINE L2 3154 3272 0 1918 136 4 0 chrY 9963101 9963373 -14749706 + AluSc SINE Alu 1 273 -36 369 0 0 0 chrY 9963380 9963421 -14749658 + (TAAA)n Simple_repeat Simple_repeat 1 41 0 1320 199 30 24 chrY 9963513 9963622 -14749457 + AluJb SINE Alu 12 119 -193 276 30 0 0 chrY 9963622 9963655 -14749424 + (CA)n Simple_repeat Simple_repeat 2 34 0 1320 199 30 24 chrY 9963655 9963842 -14749237 + AluJb SINE Alu 119 310 -2 1867 112 0 83 chrY 9964310 9964623 -14748456 + AluSc SINE Alu 1 287 -22 43023 39 26 2 chrY 9965158 9971163 -14741916 - L1PA2 LINE L1 0 6155 3 352 305 61 12 chrY 9971174 9971338 -14741741 + L1 LINE L1 4182 4353 -1793 1149 139 42 28 chrY 9971362 9971578 -14741501 + THE1C LTR MaLR 1 219 -156 261 233 151 0 chrY 9971583 9971656 -14741423 + MLT2C1 LTR ERVL 18 101 -296 249 294 87 48 chrY 9971711 9971837 -14741242 - MLT2C1 LTR ERVL -55 342 212 211 222 0 37 chrY 9971837 9971891 -14741188 + CT-rich Low_complexity Low_complexity 2 53 0 282 274 34 0 chrY 9971892 9971984 -14741095 - MLT2C1 LTR ERVL -203 194 124 22 0 0 0 chrY 9972493 9972515 -14740564 + AT_rich Low_complexity Low_complexity 1 22 0 420 138 0 15 chrY 9972781 9972846 -14740233 - MER20 DNA MER1_type -154 65 2 619 204 7 63 chrY 9972942 9973084 -14739995 - FRAM SINE Alu 0 40 1 533 169 90 0 chrY 9973085 9973174 -14739905 - AluJ/FLAM SINE Alu -213 99 3 193 356 0 0 chrY 9973494 9973553 -14739526 + MIR SINE MIR 79 137 -71 233 209 0 0 chrY 9974035 9974078 -14739001 + (CA)n Simple_repeat Simple_repeat 2 44 0 362 283 178 13 chrY 9974134 9974286 -14738793 + MER5B DNA MER1_type 2 178 0 483 63 0 0 chrY 9975552 9975615 -14737464 + (GAAA)n Simple_repeat Simple_repeat 2 64 0 1722 229 176 62 chrY 9976124 9976304 -14736775 + L1MC4 LINE L1 6991 7149 -893 1590 177 7 10 chrY 9976304 9976592 -14736487 + AluJo SINE Alu 26 312 0 1722 229 176 62 chrY 9976592 9977230 -14735849 + L1MC4 LINE L1 7149 7902 -140 2522 58 0 6 chrY 9977265 9977578 -14735501 - AluY SINE Alu 0 311 1 2143 62 3 31 chrY 9977592 9977884 -14735195 - AluY SINE Alu -8 303 20 23 0 0 0 chrY 9977912 9977935 -14735144 + AT_rich Low_complexity Low_complexity 1 23 0 895 206 34 0 chrY 9978601 9978805 -14734274 + MER20 DNA MER1_type 1 211 -8 198 0 0 0 chrY 9979180 9979202 -14733877 + (T)n Simple_repeat Simple_repeat 1 22 0 198 0 0 0 chrY 9980033 9980055 -14733024 + (A)n Simple_repeat Simple_repeat 1 22 0 1941 147 0 0 chrY 9980057 9980381 -14732698 + AluSc SINE Alu 3 326 0 30 0 0 0 chrY 9980884 9980914 -14732165 + AT_rich Low_complexity Low_complexity 1 30 0 309 292 22 0 chrY 9980914 9981003 -14732076 + L1MC4 LINE L1 6615 6705 -1337 549 174 0 0 chrY 9981005 9981137 -14731942 + (TA)n Simple_repeat Simple_repeat 2 133 0 301 303 22 0 chrY 9981137 9981226 -14731853 - L1MC4 LINE L1 -1339 6703 6613 351 145 0 0 chrY 9981226 9981295 -14731784 + (TA)n Simple_repeat Simple_repeat 1 69 0 222 37 0 0 chrY 9981295 9981322 -14731757 + (CA)n Simple_repeat Simple_repeat 2 28 0 747 204 22 11 chrY 9981813 9981994 -14731085 + MER20 DNA MER1_type 31 213 -6 189 0 0 0 chrY 9982059 9982080 -14730999 + (TCTCCC)n Simple_repeat Simple_repeat 5 25 0 8381 71 148 10 chrY 9982090 9983296 -14729783 + SVA Other Other 8 1379 -7 710 300 114 17 chrY 9983924 9984397 -14728682 + L1MC4 LINE L1 7382 7900 -142 27 0 0 0 chrY 9984479 9984506 -14728573 + AT_rich Low_complexity Low_complexity 1 27 0 1065 239 70 16 chrY 9984686 9985055 -14728024 + L1MB7 LINE L1 5713 6101 -83 1446 176 49 73 chrY 9985072 9985442 -14727637 + THE1C LTR MaLR 15 375 0 204 218 13 77 chrY 9985982 9986060 -14727019 + L2 LINE L2 3163 3235 -78 391 129 114 0 chrY 9986441 9986511 -14726568 - MADE1 DNA Mariner -2 78 1 701 23 11 0 chrY 9986791 9986878 -14726201 + (GAAAA)n Simple_repeat Simple_repeat 3 90 0 1971 71 114 11 chrY 9987849 9988129 -14724950 + AluSc SINE Alu 1 309 0 234 308 44 22 chrY 9988450 9988541 -14724538 + MIR SINE MIR 52 144 -118 1099 229 16 12 chrY 9988665 9988918 -14724161 - AluJo SINE Alu -4 308 55 699 330 47 18 chrY 9988918 9989556 -14723523 + HERVFH21 LTR ERV1 3304 4630 -1114 484 345 13 21 chrY 9989793 9990175 -14722904 + HERVFH21 LTR ERV1 4572 4950 -2806 427 245 49 86 chrY 9990586 9990831 -14722248 + HERVFH21 LTR ERV1 4733 4968 -1561 574 116 0 0 chrY 9990839 9990925 -14722154 - THE1A LTR MaLR -269 86 1 297 170 0 0 chrY 9990932 9990985 -14722094 - L1M1 LINE L1 -7400 165 113 1057 166 0 52 chrY 9991001 9991212 -14721867 + AluSg/x SINE Alu 111 310 0 1435 77 0 0 chrY 9991892 9992087 -14720992 - THE1A LTR MaLR -160 195 1 634 183 7 39 chrY 9992094 9992247 -14720832 - L1M1 LINE L1 -7400 165 18 345 91 36 0 chrY 9992261 9992316 -14720763 - L1 LINE L1 -1379 4767 4711 1377 174 33 7 chrY 9992324 9992600 -14720479 - Tigger1 DNA MER2_type -2135 283 1 3559 179 38 52 chrY 9992705 9993229 -14719850 + L1MA4 LINE L1 4492 5022 -1278 1702 144 4 22 chrY 9993229 9993507 -14719572 + AluSx SINE Alu 1 273 -39 3559 179 38 52 chrY 9993507 9993522 -14719557 + L1MA4 LINE L1 5022 5036 -1264 314 73 0 18 chrY 9993522 9993577 -14719502 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 3559 179 38 52 chrY 9993577 9994597 -14718482 + L1MA4 LINE L1 5036 6020 -280 258 222 56 11 chrY 9994593 9994683 -14718396 + L1MB3 LINE L1 6087 6180 -3 * 1109 191 36 2 chrY 9995826 9996277 -14716802 - L1M2 LINE L1 -611 5689 5158 252 208 15 88 chrY 9996277 9996386 -14716693 + MLT2C1 LTR ERVL 260 430 -34 423 0 0 0 chrY 9996440 9996487 -14716592 + (CA)n Simple_repeat Simple_repeat 2 48 0 22 0 0 0 chrY 9997026 9997048 -14716031 + GC_rich Low_complexity Low_complexity 1 22 0 241 236 0 30 chrY 9997953 9998118 -14714961 + GA-rich Low_complexity Low_complexity 2 161 0 312 211 0 33 chrY 9998156 9998336 -14714743 + GA-rich Low_complexity Low_complexity 4 177 0 420 241 0 58 chrY 9998352 9998543 -14714536 + GA-rich Low_complexity Low_complexity 1 180 0 184 241 0 29 chrY 9998581 9998751 -14714328 + GA-rich Low_complexity Low_complexity 1 165 0 294 295 0 25 chrY 9998763 9998885 -14714194 + GA-rich Low_complexity Low_complexity 1 119 0 263 171 27 9 chrY 9999375 9999486 -14713593 + (TA)n Simple_repeat Simple_repeat 2 114 0 335 220 17 17 chrY 9999530 9999648 -14713431 + (TA)n Simple_repeat Simple_repeat 1 118 0 25 0 0 0 chrY 10000919 10000944 -14712135 + AT_rich Low_complexity Low_complexity 1 25 0 320 343 131 7 chrY 10002680 10002817 -14710262 - L2 LINE L2 -2 3270 3117 1967 163 0 3 chrY 10004114 10004420 -14708659 - AluSq SINE Alu -8 305 1 246 307 71 24 chrY 10004460 10004587 -14708492 + MER94 DNA DNA 2 134 0 290 337 90 6 chrY 10005095 10005273 -14707806 + MIR SINE MIR 44 236 -26 218 237 32 21 chrY 10005278 10005371 -14707708 + (CTA)n Simple_repeat Simple_repeat 1 94 0 1957 179 8 19 chrY 10005394 10005763 -14707316 + MLT1A1 LTR MaLR 1 365 0 1679 165 45 48 chrY 10005782 10005815 -14707264 - THE1C LTR MaLR 0 375 343 1714 178 0 0 chrY 10005815 10006096 -14706983 + AluSx SINE Alu 16 296 -16 1679 165 45 48 chrY 10006096 10006438 -14706641 - THE1C LTR MaLR -32 343 1 274 365 37 23 chrY 10006724 10007023 -14706056 + LTR16B LTR ERVL 37 339 -125 21 0 0 0 chrY 10007114 10007135 -14705944 + AT_rich Low_complexity Low_complexity 1 21 0 209 309 32 21 chrY 10007665 10007759 -14705320 - MIR SINE MIR -26 236 142 277 304 70 9 chrY 10007863 10007978 -14705101 - MIR SINE MIR -34 228 107 1885 174 10 58 chrY 10007979 10008376 -14704703 - MER83B LTR ERV1 0 378 1 769 225 34 10 chrY 10008376 10008585 -14704494 + L1MA1 LINE L1 18 231 -7334 2144 171 14 2 chrY 10008650 10009088 -14703991 + L1MA1 LINE L1 5515 5957 -1608 5639 160 20 14 chrY 10009259 10010288 -14702791 + L1MA1 LINE L1 5985 7031 -690 2043 122 0 13 chrY 10010288 10010591 -14702488 + AluY SINE Alu 1 299 -12 5639 160 20 14 chrY 10010591 10011286 -14701793 + L1MA1 LINE L1 7031 7720 -1 445 185 12 0 chrY 10011307 10011388 -14701691 - MIR SINE MIR -133 129 48 22 80 0 0 chrY 10011514 10011564 -14701515 + AT_rich Low_complexity Low_complexity 1 50 0 1856 163 3 0 chrY 10011784 10012067 -14701012 - AluSc SINE Alu -13 296 13 234 263 38 0 chrY 10012735 10012815 -14700264 + MARNA DNA Mariner 485 567 -19 22 0 0 0 chrY 10012867 10012889 -14700190 + AT_rich Low_complexity Low_complexity 1 22 0 2066 142 3 0 chrY 10013395 10013690 -14699389 - AluY SINE Alu -15 296 1 715 149 50 0 chrY 10014914 10015075 -14698004 - L1MA8 LINE L1 -3 6288 6120 291 264 14 0 chrY 10015333 10015405 -14697674 + MER45 DNA AcHobo 1 73 -880 326 214 8 103 chrY 10015413 10015477 -14697602 - MER45 DNA AcHobo -1396 185 135 2519 56 0 0 chrY 10015477 10015805 -14697274 + AluY SINE Alu 1 311 0 326 214 8 103 chrY 10015805 10015857 -14697222 - MER45 DNA AcHobo -1446 135 80 1692 168 22 32 chrY 10016328 10016697 -14696382 + MLT1A1 LTR MaLR 1 365 0 183 161 32 16 chrY 10016746 10016808 -14696271 + (TA)n Simple_repeat Simple_repeat 1 63 0 225 94 0 0 chrY 10017250 10017282 -14695797 + (T)n Simple_repeat Simple_repeat 1 32 0 214 383 92 0 chrY 10018154 10018295 -14694784 + L2 LINE L2 3117 3270 -2 209 284 75 0 chrY 10018443 10018510 -14694569 - L2 LINE L2 -12 3301 3230 691 229 0 0 chrY 10018555 10018686 -14694393 - FLAM_A SINE Alu -11 131 1 684 113 0 0 chrY 10018780 10018877 -14694202 + AluSc SINE Alu 1 97 -212 307 106 0 0 chrY 10018879 10018926 -14694153 - AluSg/x SINE Alu -160 140 94 1310 247 108 20 chrY 10020256 10020702 -14692377 - MLT1D LTR MaLR 0 505 21 220 336 36 18 chrY 10020908 10021018 -14692061 + L2 LINE L2 3197 3308 -5 370 319 56 0 chrY 10021021 10021165 -14691914 + MIR SINE MIR 40 191 -71 2149 132 0 6 chrY 10021710 10022021 -14691058 - AluY SINE Alu -2 309 1 1862 169 3 3 chrY 10022841 10023137 -14689942 - AluSx SINE Alu -16 296 1 319 266 44 9 chrY 10023691 10023804 -14689275 + L2 LINE L2 3197 3313 0 991 258 21 74 chrY 10024043 10024571 -14688508 + MLT1D LTR MaLR 1 500 -5 616 164 8 41 chrY 10025243 10025365 -14687714 + THE1C LTR MaLR 64 181 -194 32 0 0 0 chrY 10025636 10025668 -14687411 + AT_rich Low_complexity Low_complexity 1 32 0 678 274 6 0 chrY 10025782 10025950 -14687129 + MER45A DNA AcHobo 10 178 0 34 0 0 0 chrY 10028787 10028821 -14684258 + AT_rich Low_complexity Low_complexity 1 34 0 207 100 0 0 chrY 10028844 10028874 -14684205 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 875 308 85 6 chrY 10029334 10029698 -14683381 + MLT1J LTR MaLR 2 394 -117 280 276 29 29 chrY 10029766 10029871 -14683208 - MIR SINE MIR -88 174 70 25 0 0 0 chrY 10031088 10031113 -14681966 + AT_rich Low_complexity Low_complexity 1 25 0 863 235 66 5 chrY 10031113 10031309 -14681770 + AluJb SINE Alu 87 294 -18 225 143 0 0 chrY 10031773 10031808 -14681271 + U2 snRNA snRNA 1 35 -153 556 241 86 25 chrY 10032752 10032914 -14680165 - MER58A DNA MER1_type -16 208 37 253 209 9 136 chrY 10032948 10033058 -14680021 + MIR SINE MIR 117 212 -50 237 211 0 0 chrY 10034735 10034792 -14678287 + (TA)n Simple_repeat Simple_repeat 2 58 0 1708 157 0 47 chrY 10034881 10035199 -14677880 - AluSx SINE Alu -9 303 1 287 51 51 17 chrY 10035206 10035265 -14677814 + T-rich Low_complexity Low_complexity 1 61 0 34553 53 0 0 chrY 10035265 10040442 -14672637 - L1PA3 LINE L1 -24 6131 954 2287 160 20 33 chrY 10041043 10041499 -14671580 - Tigger2 DNA MER2_type -2 2716 2267 297 161 113 0 chrY 10041484 10041546 -14671533 - Tigger2 DNA MER2_type -2649 69 1 * 593 184 9 0 chrY 10041931 10042043 -14671036 + THE1B LTR MaLR 245 367 -8 697 208 52 7 chrY 10042852 10043006 -14670073 - MER20 DNA MER1_type -1 218 58 22553 61 24 3 chrY 10043171 10046086 -14666993 + L1P LINE L1 8 2984 -3162 97 42 0 18 chrY 10046972 10047137 -14665942 + AT_rich Low_complexity Low_complexity 1 162 0 313 342 7 39 chrY 10047374 10047529 -14665550 - L2 LINE L2 -8 3305 3156 234 325 33 86 chrY 10047640 10047791 -14665288 - MER91B DNA MER1_type -1 189 47 1358 183 0 106 chrY 10047832 10048144 -14664935 - AluJo SINE Alu -25 287 9 23 54 0 0 chrY 10048296 10048333 -14664746 + AT_rich Low_complexity Low_complexity 1 37 0 438 57 0 0 chrY 10048742 10048795 -14664284 + LTR46 LTR ERV1 1 53 -407 512 133 0 24 chrY 10048801 10048884 -14664195 + LTR46 LTR ERV1 1 81 -379 887 235 18 14 chrY 10049627 10049844 -14663235 + MER20 DNA MER1_type 2 219 0 774 121 0 50 chrY 10049884 10050024 -14663055 - L1PA8 LINE L1 -2 6170 6038 25 51 0 0 chrY 10050134 10050173 -14662906 + AT_rich Low_complexity Low_complexity 1 39 0 205 111 0 111 chrY 10050590 10050635 -14662444 + (TAAAA)n Simple_repeat Simple_repeat 2 41 0 24 32 0 0 chrY 10051030 10051061 -14662018 + AT_rich Low_complexity Low_complexity 1 31 0 4364 207 51 42 chrY 10051317 10052457 -14660622 - L1MC1 LINE L1 -18 6315 5152 1729 184 3 3 chrY 10052457 10052762 -14660317 - AluSg SINE Alu -5 305 1 4364 207 51 42 chrY 10052762 10053161 -14659918 - L1MC1 LINE L1 -1181 5152 4758 22 94 0 0 chrY 10054118 10054182 -14658897 + AT_rich Low_complexity Low_complexity 1 64 0 183 316 70 80 chrY 10054427 10054614 -14658465 - MIR SINE MIR -77 185 1 3328 141 24 2 chrY 10054739 10055291 -14657788 + L1MA2 LINE L1 5741 6304 0 33 25 0 0 chrY 10055294 10055334 -14657745 + AT_rich Low_complexity Low_complexity 1 40 0 24 32 0 0 chrY 10055407 10055438 -14657641 + AT_rich Low_complexity Low_complexity 1 31 0 538 318 13 0 chrY 10056073 10056227 -14656852 + L2 LINE L2 1094 1249 -2065 503 294 31 19 chrY 10056270 10056430 -14656649 - MER5B DNA MER1_type -9 169 8 347 253 209 0 chrY 10056432 10056567 -14656512 - MER5A DNA MER1_type -18 171 4 765 241 76 38 chrY 10056571 10056887 -14656192 + L2 LINE L2 1305 1632 -1682 582 63 0 0 chrY 10056940 10057019 -14656060 + (GGAA)n Simple_repeat Simple_repeat 4 82 0 269 106 0 2