2152 102 0 33 chrY 390 526 -24712553 + AluSx SINE Alu 1 140 -172 2141 121 24 0 chrY 526 816 -24712263 + AluSx SINE Alu 1 297 -15 2152 102 0 33 chrY 816 984 -24712095 + AluSx SINE Alu 140 295 -17 1690 189 3 10 chrY 1017 1308 -24711771 + AluJo SINE Alu 1 289 -23 22 0 0 0 chrY 1313 1335 -24711744 + AT_rich Low_complexity Low_complexity 1 22 0 2085 118 3 0 chrY 1510 1816 -24711263 - AluSx SINE Alu 0 312 1 2498 72 0 10 chrY 2756 3062 -24710017 + AluY SINE Alu 1 303 -8 2317 97 3 0 chrY 3382 3680 -24709399 - AluSq SINE Alu -14 299 1 2255 109 30 0 chrY 4097 4399 -24708680 - AluSx SINE Alu -1 311 1 2118 110 20 17 chrY 4738 5039 -24708040 - AluSx SINE Alu -10 302 1 973 124 11 10 chrY 5228 5518 -24707561 - THE1C LTR MaLR 0 375 1 1914 161 0 3 chrY 5775 6074 -24707005 + AluJo SINE Alu 3 300 -12 2339 102 0 0 chrY 6078 6373 -24706706 - AluY SINE Alu -16 295 1 21 0 0 0 chrY 6376 6397 -24706682 + AT_rich Low_complexity Low_complexity 1 21 0 1575 115 0 9 chrY 6644 6861 -24706218 + AluSg/x SINE Alu 95 309 0 2405 79 7 3 chrY 7209 7514 -24705565 + AluSx SINE Alu 1 306 -6 354 80 0 0 chrY 7791 7841 -24705238 - MADE1 DNA Mariner -1 79 30 301 121 0 121 chrY 7837 7903 -24705176 + AluJo SINE Alu 94 151 -151 * 294 77 19 58 chrY 7904 7956 -24705123 - AluJo SINE Alu -160 142 93 * 383 41 0 0 chrY 7951 8000 -24705079 + MADE1 DNA Mariner 30 78 -2 376 229 32 13 chrY 8342 8710 -24704369 + CT-rich Low_complexity Low_complexity 1 375 0 599 214 12 15 chrY 8731 9070 -24704009 + CT-rich Low_complexity Low_complexity 1 338 0 530 289 168 43 chrY 10020 10198 -24702881 - HAL1 LINE L1 -1179 1328 1174 2397 116 0 0 chrY 10198 10508 -24702571 - AluSx SINE Alu -2 310 1 530 289 168 43 chrY 10508 10751 -24702328 - HAL1 LINE L1 -1333 1174 881 2624 71 0 0 chrY 11822 12133 -24700946 + AluY SINE Alu 1 311 0 2349 91 0 0 chrY 12477 12802 -24700277 + AluY SINE Alu 1 325 0 2337 97 7 3 chrY 13069 13377 -24699702 - AluSc SINE Alu 0 309 1 2375 103 6 3 chrY 13387 13698 -24699381 - AluSx SINE Alu 0 312 1 1728 95 9 0 chrY 14417 14639 -24698440 + AluSg/x SINE Alu 70 293 -17 1725 141 6 72 chrY 14752 15071 -24698008 - AluJo SINE Alu -14 298 1 2009 138 0 13 chrY 15350 15655 -24697424 - AluSx SINE Alu -10 302 2 2316 89 0 52 chrY 15697 16022 -24697057 + AluSp SINE Alu 2 309 -4 184 271 21 0 chrY 17741 17789 -24695290 + L2 LINE L2 3261 3309 -4 2436 90 0 0 chrY 17922 18223 -24694856 - AluSx SINE Alu -11 301 1 240 122 0 0 chrY 18544 18585 -24694494 + (T)n Simple_repeat Simple_repeat 1 41 0 1168 95 0 0 chrY 20066 20214 -24692865 - AluSc SINE Alu -161 148 1 2461 68 0 19 chrY 20608 20917 -24692162 + AluSc SINE Alu 1 303 -6 295 294 50 0 chrY 20985 21104 -24691975 - L1M4 LINE L1 -2171 3975 3851 423 0 0 0 chrY 21335 21382 -24691697 + (TG)n Simple_repeat Simple_repeat 2 48 0 2192 123 3 0 chrY 21427 21720 -24691359 - AluSx SINE Alu -18 294 1 3378 80 0 13 chrY 22353 22803 -24690276 - MLT2A1 LTR ERVL 0 444 1 2261 124 0 6 chrY 23010 23324 -24689755 - AluSx SINE Alu 0 312 1 694 251 52 22 chrY 23719 23788 -24689291 + MER58 DNA MER1_type 6 71 -2349 2095 134 3 6 chrY 23788 24101 -24688978 - AluSx SINE Alu 0 312 1 694 251 52 22 chrY 24101 24315 -24688764 + MER58 DNA MER1_type 71 2420 0 597 189 13 75 chrY 24460 24502 -24688577 - L1MB5 LINE L1 0 6174 6131 1793 115 58 0 chrY 24502 24762 -24688317 - AluSx SINE Alu -16 296 22 597 189 13 75 chrY 24762 24878 -24688201 - L1MB5 LINE L1 -43 6131 6026 504 246 0 30 chrY 24892 25026 -24688053 - MLT1C LTR MaLR 0 467 338 893 138 6 17 chrY 25031 25212 -24687867 + (TTCC)n Simple_repeat Simple_repeat 1 179 0 268 189 27 0 chrY 25217 25291 -24687788 + CT-rich Low_complexity Low_complexity 2 77 0 2084 110 0 21 chrY 25291 25573 -24687506 - AluSx SINE Alu -36 276 1 1003 176 131 0 chrY 25574 25795 -24687284 - MLT1C LTR MaLR -113 354 105 440 80 0 148 chrY 25797 25850 -24687229 - MADE1 DNA Mariner 0 80 43 2307 112 0 0 chrY 25850 26146 -24686933 + AluSg SINE Alu 1 296 -14 440 80 0 148 chrY 26146 26180 -24686899 - MADE1 DNA Mariner -37 43 6 524 191 0 9 chrY 26185 26290 -24686789 - MLT1C LTR MaLR -363 104 1 852 230 0 0 chrY 26293 26489 -24686590 - L1MB5 LINE L1 -169 6005 5810 534 165 0 0 chrY 26602 26705 -24686374 + (CA)n Simple_repeat Simple_repeat 1 103 0 2263 117 0 0 chrY 26763 27054 -24686025 + AluSx SINE Alu 3 293 -19 1477 158 3 89 chrY 29388 29514 -24683565 + MER47A DNA MER2_type 1 136 -2187 2034 125 24 14 chrY 29514 29811 -24683268 - AluSq SINE Alu -13 300 1 1477 158 3 89 chrY 29811 30020 -24683059 + MER47A DNA MER2_type 136 307 -59 1519 225 0 10 chrY 30020 30331 -24682748 - AluJo SINE Alu 0 312 5 270 280 17 68 chrY 30362 30454 -24682625 - MIR SINE MIR -40 222 136 3469 71 21 5 chrY 30454 30891 -24682188 - MLT2A1 LTR ERVL 0 444 1 270 280 17 68 chrY 30891 30916 -24682163 - MIR SINE MIR -126 136 111 3654 124 26 0 chrY 31044 31584 -24681495 - MER41A LTR ERV1 0 554 1 1036 109 14 0 chrY 31844 31991 -24681088 + L1PA10 LINE L1 6020 6168 0 1030 187 41 8 chrY 32287 32533 -24680546 + L1MA4 LINE L1 6046 6299 -1 4073 178 80 9 chrY 32619 33390 -24679689 - LTR1B LTR ERV1 0 826 1 2348 125 0 0 chrY 33625 33937 -24679142 + AluSx SINE Alu 1 312 0 346 194 62 131 chrY 34181 34341 -24678738 - MER5A DNA MER1_type 0 189 41 859 228 47 9 chrY 34527 34738 -24678341 + MER20 DNA MER1_type 1 219 0 318 194 37 37 chrY 34755 34863 -24678216 + (TCTA)n Simple_repeat Simple_repeat 4 111 0 641 141 19 6 chrY 34874 35030 -24678049 + (TCTA)n Simple_repeat Simple_repeat 4 161 0 728 254 46 0 chrY 35046 35243 -24677836 + MER20 DNA MER1_type 14 219 0 1014 97 0 156 chrY 35941 36127 -24676952 + AluSg/x SINE Alu 138 294 -18 1880 195 4 30 chrY 36280 36389 -24676690 + MLT1B LTR MaLR 1 111 -285 2298 70 33 33 chrY 36389 36691 -24676388 + AluY SINE Alu 1 302 -9 1880 195 4 30 chrY 36691 36985 -24676094 + MLT1B LTR MaLR 111 396 0 2178 167 8 13 chrY 37014 37403 -24675676 + MLT1B LTR MaLR 4 390 0 1093 175 5 24 chrY 37404 37641 -24675438 + MLT1B LTR MaLR 159 467 0 1235 178 9 0 chrY 37641 37871 -24675208 + MLT1B LTR MaLR 158 389 -1 334 278 21 10 chrY 37880 37977 -24675102 + MER5A DNA MER1_type 6 103 -86 3172 166 46 88 chrY 38731 38960 -24674119 + LTR39 LTR ERV1 1 238 -545 1960 135 10 10 chrY 38960 39248 -24673831 - AluSx SINE Alu -24 288 1 3172 166 46 88 chrY 39248 39827 -24673252 + LTR39 LTR ERV1 238 775 -8 3431 144 11 0 chrY 39832 40375 -24672704 + MER41A LTR ERV1 6 554 0 2099 143 0 0 chrY 40693 41001 -24672078 + AluSx SINE Alu 1 308 -4 1862 160 0 17 chrY 41001 41301 -24671778 + AluSg SINE Alu 1 295 -15 324 70 0 0 chrY 41301 41344 -24671735 + (GGAA)n Simple_repeat Simple_repeat 2 44 0 2977 144 20 64 chrY 41797 42078 -24671001 - MER39B LTR ERV1 -27 626 334 2462 73 0 0 chrY 42078 42366 -24670713 - AluSc SINE Alu -21 288 1 2977 144 20 64 chrY 42366 42485 -24670594 - MER39B LTR ERV1 -319 334 211 2619 52 0 3 chrY 42485 42792 -24670287 - AluY SINE Alu -5 306 1 2977 144 20 64 chrY 42792 43044 -24670035 - MER39B LTR ERV1 -442 211 2 2266 131 0 0 chrY 44412 44724 -24668355 + AluSx SINE Alu 1 312 0 228 378 56 14 chrY 45322 45465 -24667614 + MIR SINE MIR 103 251 -11 418 247 159 12 chrY 45741 45911 -24667168 - MLT1J2 LTR MaLR 0 450 256 1289 191 22 4 chrY 46057 46329 -24666750 + L1MB5 LINE L1 5809 6085 -89 1691 187 3 31 chrY 46758 47079 -24666000 - AluJo SINE Alu 0 312 1 2668 204 31 4 chrY 48113 48658 -24664421 + L1MB5 LINE L1 5615 6174 0 23 54 0 0 chrY 48935 48972 -24664107 + AT_rich Low_complexity Low_complexity 1 37 0 252 188 25 12 chrY 48980 49060 -24664019 + GA-rich Low_complexity Low_complexity 4 84 0 478 218 17 11 chrY 49084 49263 -24663816 + GA-rich Low_complexity Low_complexity 1 180 0 1167 112 0 0 chrY 49299 49407 -24663672 + (GGAA)n Simple_repeat Simple_repeat 1 287 0 1167 112 0 0 chrY 49407 49586 -24663493 + (GGAA)n Simple_repeat Simple_repeat 1 179 0 198 71 0 0 chrY 50106 50134 -24662945 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 3784 194 19 4 chrY 50685 51438 -24661641 + L1MB5 LINE L1 5405 6168 -6 2456 106 0 0 chrY 51471 51783 -24661296 + AluSx SINE Alu 1 312 0 867 50 0 0 chrY 51800 51901 -24661178 + AluYa5 SINE Alu 1 101 -210 3998 74 9 7 chrY 51902 52459 -24660620 - LTR6B LTR ERV1 0 558 1 1547 63 5 15 chrY 52459 52665 -24660414 + AluYa5 SINE Alu 99 302 -9 1138 164 0 11 chrY 53227 53416 -24659663 + AluJb SINE Alu 123 309 -3 1135 39 0 0 chrY 53573 53702 -24659377 + AluY SINE Alu 1 129 -182 1994 142 13 10 chrY 54055 54366 -24658713 + AluJo SINE Alu 1 312 0 1984 122 42 7 chrY 54570 54858 -24658221 - AluSx SINE Alu -14 298 1 232 266 70 8 chrY 54871 54999 -24658080 + L1MB5 LINE L1 4980 5115 -1031 879 156 28 0 chrY 55000 55141 -24657938 + AluSg/x SINE Alu 153 297 -15 189 0 0 0 chrY 55181 55202 -24657877 + (TAA)n Simple_repeat Simple_repeat 2 22 0 958 186 4 75 chrY 55302 55439 -24657640 + MER2 DNA MER2_type 1 117 -228 2228 120 0 0 chrY 55439 55739 -24657340 - AluSx SINE Alu -12 300 1 958 186 4 75 chrY 55739 55827 -24657252 + MER2 DNA MER2_type 117 210 -135 227 30 0 30 chrY 55975 56008 -24657071 + (GAAAA)n Simple_repeat Simple_repeat 4 35 0 24 32 0 0 chrY 56202 56233 -24656846 + AT_rich Low_complexity Low_complexity 1 31 0 2032 112 35 0 chrY 56241 56527 -24656552 + AluSg SINE Alu 1 296 -14 403 189 7 45 chrY 56567 56715 -24656364 - MER4A LTR ERV1 -203 461 261 598 111 0 10 chrY 56715 56814 -24656265 - MER4A LTR ERV1 -566 98 1 4365 101 23 14 chrY 56852 57271 -24655808 + PABL_A LTR ERV1 1 430 -230 2470 56 0 3 chrY 57271 57577 -24655502 + AluY SINE Alu 1 305 -6 4365 101 23 14 chrY 57577 57809 -24655270 + PABL_A LTR ERV1 430 658 -2 491 260 50 10 chrY 57833 58033 -24655046 - MER67C LTR ERV1 -469 241 34 829 260 71 0 chrY 58396 58704 -24654375 + L1MB5 LINE L1 5465 5794 -370 2339 78 3 0 chrY 58774 59070 -24654009 + AluY SINE Alu 1 297 -14 322 263 8 60 chrY 59113 59246 -24653833 + L1ME2 LINE L1 6002 6127 -37 22 0 0 0 chrY 59297 59319 -24653760 + AT_rich Low_complexity Low_complexity 1 22 0 2436 87 3 0 chrY 59626 59936 -24653143 - AluY SINE Alu 0 311 1 333 272 60 106 chrY 59941 60176 -24652903 - MIR SINE MIR -19 243 20 329 299 7 28 chrY 60370 60514 -24652565 + L1ME3 LINE L1 5627 5767 -403 416 245 20 0 chrY 60543 60645 -24652434 + U6 snRNA snRNA 4 107 0 863 206 46 27 chrY 60645 60907 -24652172 + L1MA8 LINE L1 5960 6226 -65 255 223 91 41 chrY 60950 61002 -24652077 + L1ME3 LINE L1 5870 5918 -244 2139 139 94 54 chrY 61002 61468 -24651611 - MER31A LTR ERV1 0 485 1 255 223 91 41 chrY 61468 61536 -24651543 + L1ME3 LINE L1 5918 5996 -166 276 234 156 44 chrY 62108 62313 -24650766 - LTR37A LTR ERV1 -2 424 197 1110 210 11 11 chrY 64887 65154 -24647925 + L1MB5 LINE L1 5831 6097 -77 219 253 0 80 chrY 66419 66494 -24646585 + L2 LINE L2 3203 3271 -1 313 239 87 0 chrY 67604 67696 -24645383 + L1M4 LINE L1 5102 5201 -945 434 257 28 7 chrY 69864 70008 -24643071 - MER39 LTR ERV1 -11 696 550 504 126 0 0 chrY 70024 70111 -24642968 - AluSp/q SINE Alu -5 308 222 461 287 71 35 chrY 70114 70368 -24642711 - LTR47B LTR ERVL -130 313 51 1101 344 83 31 chrY 70690 71421 -24641658 - LTR49-int LTR ERV1 -439 6683 5885 1992 140 0 10 chrY 71421 71747 -24641332 - AluSc SINE Alu 0 309 1 1101 344 83 31 chrY 71747 72014 -24641065 - LTR49-int LTR ERV1 -1237 5885 5633 1892 137 20 13 chrY 72612 72911 -24640168 + AluSx SINE Alu 1 301 -11 1482 193 64 10 chrY 73003 73299 -24639780 - AluJb SINE Alu 0 312 1 2245 168 46 26 chrY 73299 73365 -24639714 + Tigger3(Golem) DNA MER2_type 2511 2574 -455 2129 134 0 0 chrY 73365 73663 -24639416 + AluSx SINE Alu 1 298 -14 2245 168 46 26 chrY 73663 74095 -24638984 + Tigger3(Golem) DNA MER2_type 2574 3019 -10 306 50 0 0 chrY 74186 74226 -24638853 + (CA)n Simple_repeat Simple_repeat 2 41 0 2047 125 18 0 chrY 74252 74554 -24638525 + AluSg SINE Alu 1 307 0 1157 193 97 65 chrY 74643 74957 -24638122 - MER65C LTR ERV1 -15 446 113 2002 128 14 0 chrY 74957 75239 -24637840 - AluSx SINE Alu -26 286 1 1157 193 97 65 chrY 75239 75355 -24637724 - MER65C LTR ERV1 -348 113 2 1928 140 13 17 chrY 75609 75909 -24637170 - AluSq SINE Alu -11 302 4 39 22 0 0 chrY 75970 76016 -24637063 + AT_rich Low_complexity Low_complexity 1 46 0 812 255 117 11 chrY 76201 76483 -24636596 - LTR49-int LTR ERV1 -698 4173 3862 2055 125 3 0 chrY 76560 76848 -24636231 + AluSp SINE Alu 1 289 -24 351 113 0 0 chrY 76848 76901 -24636178 + (TA)n Simple_repeat Simple_repeat 1 53 0 288 211 122 11 chrY 77025 77115 -24635964 - LTR49-int LTR ERV1 -1409 3462 3363 814 246 45 10 chrY 77230 77519 -24635560 - LTR49-int LTR ERV1 -1570 3301 3003 17425 135 10 13 chrY 77540 81334 -24631745 - L1PA10 LINE L1 -6 6162 2377 33805 94 15 19 chrY 81358 87531 -24625548 - L1PA6 LINE L1 -2 6152 11 3854 159 37 8 chrY 87522 88303 -24624776 - L1PA10 LINE L1 -3739 2407 1604 * 345 221 0 19 chrY 88307 88411 -24624668 - LTR49-int LTR ERV1 -1753 3183 3082 2241 113 3 0 chrY 88442 88734 -24624345 - AluY SINE Alu -18 293 1 1756 180 0 7 chrY 88790 89085 -24623994 + AluSx SINE Alu 1 293 -19 1800 204 23 43 chrY 89105 89545 -24623534 - MSTB1 LTR MaLR 0 432 2 391 241 40 65 chrY 89604 89803 -24623276 - LTR49-int LTR ERV1 -2098 4233 4040 900 218 6 0 chrY 89874 90086 -24622993 + AluSg/x SINE Alu 113 325 0 6992 193 28 44 chrY 90097 90902 -24622177 - L1PA15 LINE L1 0 6165 5349 2142 111 0 38 chrY 90902 91218 -24621861 - AluSp SINE Alu -5 308 5 6992 193 28 44 chrY 91218 91616 -24621463 - L1PA15 LINE L1 -816 5349 4946 2145 128 0 0 chrY 91616 91913 -24621166 - AluY SINE Alu -14 297 1 6992 193 28 44 chrY 91913 93373 -24619706 - L1PA15 LINE L1 -1219 4946 3513 2281 107 3 0 chrY 93390 93698 -24619381 - AluY SINE Alu -2 309 1 1913 132 3 35 chrY 94066 94376 -24618703 + AluSc SINE Alu 1 300 -9 1560 209 3 11 chrY 94591 94874 -24618205 + AluSx SINE Alu 9 289 -23 439 156 104 32 chrY 94875 95029 -24618050 - LTR49-int LTR ERV1 -1149 3787 3623 1168 164 34 57 chrY 95222 95520 -24617559 - MER65C LTR ERV1 -31 430 140 2218 99 10 0 chrY 95528 95851 -24617228 + AluSp SINE Alu 1 313 0 249 182 0 0 chrY 95870 95914 -24617165 - MER65C LTR ERV1 -417 44 1 768 141 14 7 chrY 95936 96078 -24617001 - L1MA3 LINE L1 0 6305 6163 3676 180 40 54 chrY 96082 96375 -24616704 - L1MA5 LINE L1 -292 6008 5712 2169 90 53 17 chrY 96375 96674 -24616405 - AluSg SINE Alu 0 310 1 3676 180 40 54 chrY 96674 97279 -24615800 - L1MA5 LINE L1 -588 5712 5100 2224 126 3 0 chrY 97279 97588 -24615491 - AluSp SINE Alu -3 310 1 3676 180 40 54 chrY 97588 98375 -24614704 - L1MA5 LINE L1 -1200 5100 4411 2161 134 3 0 chrY 98375 98680 -24614399 - AluSx SINE Alu -6 306 1 785 182 18 18 chrY 98709 98879 -24614200 + L1MA8 LINE L1 5961 6130 -161 301 243 0 0 chrY 98876 98950 -24614129 + L1 LINE L1 3750 3823 -2323 * 690 262 30 13 chrY 98950 99187 -24613892 + MLT1D LTR MaLR 265 505 0 1914 137 47 3 chrY 99384 99705 -24613374 - AluSx SINE Alu 0 334 1 1491 226 104 35 chrY 100317 100835 -24612244 + LTR64 LTR ERVK 3 556 -2 1990 95 11 0 chrY 100964 101250 -24611829 + AluSp SINE Alu 22 310 0 317 238 116 43 chrY 101456 101620 -24611459 + L1ME LINE L1 5641 5816 -305 240 111 0 0 chrY 102176 102212 -24610867 + (CA)n Simple_repeat Simple_repeat 1 36 0 456 143 0 0 chrY 102346 102409 -24610670 - AluS SINE Alu -21 288 226 228 170 19 38 chrY 102465 102518 -24610561 - LTR68 LTR ERV1 -303 437 386 306 87 0 0 chrY 102990 103036 -24610043 + (CA)n Simple_repeat Simple_repeat 2 47 0 236 159 0 0 chrY 103048 103092 -24609987 + HAL1 LINE L1 2111 2154 -353 1918 151 14 0 chrY 103181 103465 -24609614 - AluSx SINE Alu -24 288 1 835 248 0 6 chrY 103520 103720 -24609359 - AluJo SINE Alu 0 320 122 6719 139 73 5 chrY 104056 104132 -24608947 - MER41-int LTR ERV1 -447 7090 7021 2099 128 3 13 chrY 104132 104445 -24608634 - AluSg SINE Alu 0 310 1 6719 139 73 5 chrY 104445 105454 -24607625 - MER41-int LTR ERV1 -516 7021 5931 10691 128 20 19 chrY 105454 107499 -24605580 + L1P3 LINE L1 687 2738 -3723 2445 216 28 55 chrY 107478 108201 -24604878 + L1M4 LINE L1 4392 5094 -1367 * 3366 135 43 53 chrY 108279 108903 -24604176 - MER41-int LTR ERV1 -1671 5866 5249 1736 111 23 24 chrY 108902 108942 -24604137 - MER41-int LTR ERV1 -2572 2645 2606 * 2078 137 0 3 chrY 108942 109248 -24603831 + AluSx SINE Alu 1 305 -7 1736 111 23 24 chrY 109248 109595 -24603484 - MER41-int LTR ERV1 -2611 2606 2214 * 2432 142 134 14 chrY 109577 110084 -24602995 - MER41-int LTR ERV1 -2578 3368 2801 520 78 184 58 chrY 110060 110163 -24602916 - MER41-int LTR ERV1 -4781 1165 1050 * 6258 127 48 50 chrY 110151 110670 -24602409 - MER41-int LTR ERV1 -4769 3047 2528 2596 148 42 29 chrY 110670 111148 -24601931 - LTR19A LTR ERV1 -2 484 1 6258 127 48 50 chrY 111148 111885 -24601194 - MER41-int LTR ERV1 -5288 2528 1794 1509 170 8 0 chrY 111905 112152 -24600927 - AluY SINE Alu -25 286 38 676 186 9 89 chrY 112156 112378 -24600701 - MER4A LTR ERV1 -140 524 261 475 155 31 21 chrY 112378 112475 -24600604 - MER4A LTR ERV1 -566 98 1 4559 160 36 32 chrY 112475 113367 -24599712 - MER41-int LTR ERV1 -6213 1603 709 2627 111 22 24 chrY 113367 113917 -24599162 - PABL_A LTR ERV1 -69 591 1 193 220 20 20 chrY 113968 114018 -24599061 + MIR SINE MIR 199 248 -14 673 118 80 96 chrY 114166 114294 -24598785 + MER4A LTR ERV1 1 127 -537 2153 89 3 48 chrY 114294 114608 -24598471 + AluY SINE Alu 1 300 -11 673 118 80 96 chrY 114608 114666 -24598413 + MER4A LTR ERV1 127 184 -480 1738 112 0 0 chrY 114666 114907 -24598172 - AluY SINE Alu -22 289 49 3109 182 47 7 chrY 114907 115484 -24597595 - MER41-int LTR ERV1 -7111 705 106 1068 183 0 0 chrY 115507 115693 -24597386 + MER4A LTR ERV1 171 356 -308 1561 114 0 0 chrY 115757 115958 -24597121 - AluSp SINE Alu -112 201 1 544 169 141 87 chrY 115978 116162 -24596917 + MER4A LTR ERV1 355 548 -116 414 0 0 0 chrY 116162 116208 -24596871 + (GA)n Simple_repeat Simple_repeat 1 46 0 765 180 0 14 chrY 116208 116347 -24596732 + L1MA10 LINE L1 6161 6297 -37 198 71 0 0 chrY 116364 116392 -24596687 + (TTTAA)n Simple_repeat Simple_repeat 3 30 0 2497 34 0 20 chrY 116392 116679 -24596400 - AluY SINE Alu -28 283 1 272 292 21 10 chrY 116769 116865 -24596214 - L1MB7 LINE L1 -26 6158 6062 1845 173 92 19 chrY 120145 120556 -24592523 - MER67A LTR ERV1 -102 441 1 234 287 37 56 chrY 121804 121912 -24591167 + MIR SINE MIR 46 151 -111 1386 153 65 102 chrY 124567 124919 -24588160 - L1PB3 LINE L1 -9 6145 5807 2879 10 0 0 chrY 126624 126934 -24586145 - AluYa5 SINE Alu -1 310 1 2279 95 7 0 chrY 129627 129921 -24583158 - AluSp SINE Alu -16 297 2 308 270 43 43 chrY 131763 131926 -24581153 + L1MC5 LINE L1 7745 7907 -54 2222 104 3 7 chrY 131930 132228 -24580851 - AluY SINE Alu -14 297 1 779 145 16 0 chrY 132389 132513 -24580566 - AluSx SINE Alu -11 299 174 892 101 8 0 chrY 132514 132633 -24580446 - AluSx SINE Alu -192 120 1 225 246 57 57 chrY 132720 132842 -24580237 - L1MC4a LINE L1 -1347 6461 6340 3370 219 75 39 chrY 132862 133208 -24579871 - L1MB2 LINE L1 -2 6405 6073 1935 150 7 3 chrY 133208 133508 -24579571 - AluSq SINE Alu -12 301 1 3370 219 75 39 chrY 133508 134563 -24578516 - L1MB2 LINE L1 -334 6073 4955 497 215 93 19 chrY 134597 134802 -24578277 - L1MB2 LINE L1 -2912 3470 3251 679 253 5 61 chrY 134803 135093 -24577986 - L1MB2 LINE L1 -3750 2632 2361 455 209 57 81 chrY 135132 135343 -24577736 - L1MB2 LINE L1 -4048 2336 2131 453 250 167 15 chrY 135480 135557 -24577522 - L1MB2 LINE L1 -4512 1872 1808 195 42 0 0 chrY 135557 135581 -24577498 + (TTTC)n Simple_repeat Simple_repeat 1 24 0 453 250 167 15 chrY 135581 135707 -24577372 - L1MB2 LINE L1 -4576 1808 1638 3550 158 74 36 chrY 135721 136423 -24576656 + MER4E LTR ERV1 1 729 -50 1344 208 135 75 chrY 136426 137151 -24575928 - L1MB2 LINE L1 -4761 1623 855 376 209 0 57 chrY 137155 137260 -24575819 - L1M3c LINE L1 -5124 1017 919 2132 125 7 0 chrY 137399 137704 -24575375 - AluSp SINE Alu -5 308 2 866 138 0 29 chrY 137704 137842 -24575237 - AluSq/x SINE Alu -177 135 2 1027 169 6 6 chrY 137843 138009 -24575070 - AluSg/x SINE Alu -11 301 136 370 294 57 64 chrY 138029 138294 -24574785 - L1MEd LINE L1 -4937 1593 1331 2287 93 6 10 chrY 141661 141973 -24571106 - AluY SINE Alu 0 311 1 738 267 4 43 chrY 142965 143197 -24569882 - MLT1E2 LTR MaLR -160 466 244 3473 190 32 10 chrY 143302 143981 -24569098 - MER52A LTR ERV1 -2 1753 1060 342 229 79 14 chrY 143949 144089 -24568990 - MER52C LTR ERV1 -680 598 450 * 1279 213 48 21 chrY 144311 144602 -24568477 - AluSx SINE Alu -13 299 1 1857 143 0 4 chrY 146021 146293 -24566786 + AluSg SINE Alu 19 289 -21 507 237 237 6 chrY 146294 146467 -24566612 - MLT1C LTR MaLR -57 410 198 2252 120 3 0 chrY 146501 146809 -24566270 - AluY SINE Alu 0 311 3 663 227 65 38 chrY 146886 147071 -24566008 - Charlie1a DNA MER1_type -1225 230 41 283 281 110 20 chrY 147324 147470 -24565609 + L1ME3 LINE L1 5801 5959 -203 809 238 0 0 chrY 147790 147950 -24565129 - AluJo SINE Alu -15 297 138 3749 121 2 4 chrY 147951 148463 -24564616 - MER9 LTR ERVK 0 511 1 770 165 23 30 chrY 148474 148607 -24564472 - AluJo SINE Alu -169 133 2 1404 252 107 65 chrY 148608 148852 -24564227 - L1MDa LINE L1 -2726 3814 3582 1941 148 3 16 chrY 148852 149157 -24563922 - AluSx SINE Alu -11 301 1 1404 252 107 65 chrY 149157 150152 -24562927 - L1MDa LINE L1 -2958 3582 2524 670 241 39 24 chrY 150161 150368 -24562711 - PABL_B LTR ERV1 -2 665 456 669 199 149 47 chrY 150857 151178 -24561901 - L1MDa LINE L1 -4037 2503 2150 * 1593 291 100 23 chrY 151169 152165 -24560914 - L1MDa LINE L1 -5194 1346 35 8457 63 19 0 chrY 152260 153248 -24559831 + LTR13 LTR ERVK 1 1007 0 1856 136 3 89 chrY 153303 153641 -24559438 + AluSx SINE Alu 1 309 -3 2362 85 0 0 chrY 153641 153936 -24559143 + AluY SINE Alu 1 295 -16 2011 154 13 0 chrY 154389 154695 -24558384 + AluSx SINE Alu 1 310 -2 492 100 0 0 chrY 155519 155599 -24557480 + (TA)n Simple_repeat Simple_repeat 2 81 0 1665 183 37 0 chrY 156003 156303 -24556776 + AluSx SINE Alu 1 311 -1 1137 224 79 34 chrY 156791 157170 -24555909 + MSTD LTR MaLR 1 396 0 2319 64 17 10 chrY 158311 158609 -24554470 + AluY SINE Alu 1 300 -11 1300 136 15 5 chrY 159991 160189 -24552890 + AluSc SINE Alu 103 302 -7 2138 136 0 0 chrY 160200 160494 -24552585 + AluSg SINE Alu 5 298 -12 628 247 59 0 chrY 160494 160689 -24552390 + L1MB5 LINE L1 5964 6161 -5 2237 102 0 13 chrY 160694 160998 -24552081 + AluY SINE Alu 1 300 -11 12558 119 22 10 chrY 160998 163013 -24550066 - HERVK3 LTR ERVK -5167 2076 38 911 173 6 6 chrY 163019 163192 -24549887 - LTR3 LTR ERVK -3 429 257 1400 172 8 0 chrY 163228 163466 -24549613 - LTR3 LTR ERVK -171 261 22 4228 218 74 6 chrY 163478 164423 -24548656 - MER83-int LTR ERV1 -3268 1017 9 2105 161 25 39 chrY 164433 164869 -24548210 - MER83 LTR ERV1 -13 435 6 452 208 14 14 chrY 165063 165207 -24547872 + CT-rich Low_complexity Low_complexity 2 145 0 1164 247 36 23 chrY 165207 165515 -24547564 - AluJo SINE Alu 0 312 1 22 0 0 0 chrY 165616 165638 -24547441 + AT_rich Low_complexity Low_complexity 1 22 0 2053 122 3 0 chrY 165762 166048 -24547031 + AluSg1 SINE Alu 1 287 -22 1770 185 3 0 chrY 166057 166344 -24546735 + AluJb SINE Alu 1 288 -24 1643 169 26 0 chrY 166354 166621 -24546458 + AluJb SINE Alu 37 310 -2 314 208 24 24 chrY 166624 166749 -24546330 + GA-rich Low_complexity Low_complexity 3 127 0 769 148 9 0 chrY 166869 166984 -24546095 + FLAM_C SINE Alu 1 116 -17 1976 136 0 14 chrY 167099 167413 -24545666 + AluSg SINE Alu 1 310 0 2365 63 0 7 chrY 167478 167779 -24545300 + AluY SINE Alu 1 299 -12 1011 207 14 5 chrY 167780 168002 -24545077 - L1MB2 LINE L1 -344 5827 5604 1579 256 66 26 chrY 168023 168886 -24544193 - L1M4 LINE L1 -3172 3210 2307 762 246 62 9 chrY 168886 169110 -24543969 - MER46A DNA MER2_type 0 236 1 1579 256 66 26 chrY 169110 169274 -24543805 - L1M4 LINE L1 -4075 2307 2151 209 191 22 45 chrY 169276 169365 -24543714 + T-rich Low_complexity Low_complexity 2 88 0 457 310 21 7 chrY 169392 169534 -24543545 - FRAM SINE Alu -32 144 1 2129 227 62 82 chrY 169653 169684 -24543395 - L1M4 LINE L1 -4488 1896 1866 2101 85 44 10 chrY 169684 169977 -24543102 + AluY SINE Alu 1 303 -8 2129 227 62 82 chrY 169977 170456 -24542623 - L1M4 LINE L1 -4518 1866 1379 623 217 16 0 chrY 170456 170585 -24542494 - FLAM_A SINE Alu -1 132 2 2129 227 62 82 chrY 170585 171232 -24541847 - L1M4 LINE L1 -5005 1379 859 2275 67 16 22 chrY 171232 171544 -24541535 + AluY SINE Alu 1 310 -1 2129 227 62 82 chrY 171544 171626 -24541453 - L1M4 LINE L1 -5525 859 777 21 36 0 0 chrY 172597 172625 -24540454 + AT_rich Low_complexity Low_complexity 1 28 0 180 0 0 0 chrY 174413 174433 -24538646 + (TTAA)n Simple_repeat Simple_repeat 1 20 0 2159 124 0 0 chrY 174439 174730 -24538349 - AluSx SINE Alu -21 291 1 512 268 7 7 chrY 175108 175246 -24537833 + AluSq/x SINE Alu 1 138 -175 771 208 169 0 chrY 175246 175453 -24537626 - AluSg SINE Alu -7 303 62 970 266 34 20 chrY 175466 175820 -24537259 + L1PB1 LINE L1 7 365 -6498 6501 196 49 118 chrY 175848 176700 -24536379 + L1PB1 LINE L1 2006 2915 -3952 2145 104 7 19 chrY 176700 177007 -24536072 + AluSg SINE Alu 1 303 -7 6501 196 49 118 chrY 177007 178476 -24534603 + L1PB1 LINE L1 2915 4484 -2383 238 226 52 87 chrY 178476 178591 -24534488 + LTR4 LTR ERV1 7 117 -479 6501 196 49 118 chrY 178591 178869 -24534210 + L1PB1 LINE L1 4484 4780 -2087 518 264 19 28 chrY 178869 179081 -24533998 + LTR4 LTR ERV1 385 594 -2 6501 196 49 118 chrY 179081 179983 -24533096 + L1PB1 LINE L1 4780 5743 -1124 2465 85 0 0 chrY 179983 180288 -24532791 + AluY SINE Alu 2 306 -5 6501 196 49 118 chrY 180288 181321 -24531758 + L1PB1 LINE L1 5743 6485 -382 1697 163 33 23 chrY 181321 181622 -24531457 + AluSx SINE Alu 1 304 -8 6501 196 49 118 chrY 181622 181980 -24531099 + L1PB1 LINE L1 6485 6866 -1 206 174 0 43 chrY 182368 182402 -24530677 + CT-rich Low_complexity Low_complexity 5 38 -10 2447 93 0 0 chrY 182402 182712 -24530367 - AluY SINE Alu -1 310 1 206 174 0 43 chrY 182712 182723 -24530356 + CT-rich Low_complexity Low_complexity 38 48 0 1240 197 32 29 chrY 182724 182875 -24530204 - AluJo SINE Alu -21 291 137 2132 135 3 3 chrY 182875 183171 -24529908 - AluSq SINE Alu -12 301 6 1240 197 32 29 chrY 183171 183298 -24529781 - AluJo SINE Alu -175 137 12 1632 206 0 13 chrY 183911 184212 -24528867 - AluJo SINE Alu -5 307 11 181 57 57 0 chrY 184222 184257 -24528822 + T-rich Low_complexity Low_complexity 1 37 0 284 323 16 16 chrY 185323 185447 -24527632 + MER21A LTR ERV1 550 673 -258 4786 119 53 12 chrY 185793 186542 -24526537 - LTR17 LTR ERV1 0 780 1 631 248 66 9 chrY 186570 186889 -24526190 - L1M4 LINE L1 -2912 3234 2898 695 203 86 16 chrY 186894 187081 -24525998 + LTR54 LTR ERV1 1 200 -310 455 178 0 0 chrY 187130 187220 -24525859 + L1M3f LINE L1 73 162 -5166 3469 234 82 19 chrY 187223 188383 -24524696 + L1M3f LINE L1 383 1704 -4624 252 0 0 0 chrY 188383 188411 -24524668 + (CA)n Simple_repeat Simple_repeat 2 29 0 3469 234 82 19 chrY 188411 189059 -24524020 + L1M3f LINE L1 1704 2310 -4018 408 194 28 0 chrY 189074 189146 -24523933 - AluJ/FRAM SINE Alu -23 289 216 5190 212 95 49 chrY 189170 191109 -24521970 + L1M3f LINE L1 2323 4350 -1978 2233 97 0 3 chrY 191109 191408 -24521671 + AluY SINE Alu 1 298 -13 189 45 45 45 chrY 191471 191515 -24521564 + (CAAAAA)n Simple_repeat Simple_repeat 2 45 0 698 193 0 7 chrY 191799 191949 -24521130 + LOR1b LTR ERV1 1 149 -312 3603 220 13 29 chrY 191952 192441 -24520638 - L1 LINE L1 -900 5246 4751 1039 181 206 34 chrY 192441 192733 -24520346 + MER61A LTR ERV1 2 343 0 3603 220 13 29 chrY 192733 193366 -24519713 - L1 LINE L1 -1395 4751 4142 1195 177 0 51 chrY 193372 193570 -24519509 + LOR1-int LTR ERV1 3663 3870 -4250 276 30 0 0 chrY 193570 193603 -24519476 + (TTA)n Simple_repeat Simple_repeat 1 33 0 7544 28 0 0 chrY 193604 195264 -24517815 - L1PA3 LINE L1 -18 6137 4488 1195 177 0 51 chrY 195264 195317 -24517762 + LOR1-int LTR ERV1 3869 3903 -4217 795 180 0 31 chrY 195339 195500 -24517579 + MER61A LTR ERV1 188 343 0 631 161 0 8 chrY 195501 195631 -24517448 - L1 LINE L1 -1371 4775 4647 1356 126 59 20 chrY 195631 195885 -24517194 + LOR1-int LTR ERV1 3916 4179 -3941 10393 122 9 1 chrY 195886 197571 -24515508 - L1P LINE L1 -3178 2968 1269 15692 91 9 0 chrY 197571 198054 -24515025 + L1PA7 LINE L1 3101 3578 -2576 1990 118 31 10 chrY 198054 198342 -24514737 - AluSc SINE Alu -15 294 1 15692 91 9 0 chrY 198342 200908 -24512171 + L1PA7 LINE L1 3578 6151 -3 429 130 26 13 chrY 201027 201104 -24511975 + THE1B LTR MaLR 287 364 0 694 217 30 18 chrY 201104 201270 -24511809 - THE1C LTR MaLR -207 168 1 452 64 73 82 chrY 201271 201354 -24511725 + LOR1-int LTR ERV1 4235 4318 -3802 1517 217 20 7 chrY 201354 201653 -24511426 - AluJb SINE Alu -9 303 1 452 64 73 82 chrY 201653 201679 -24511400 + LOR1-int LTR ERV1 4318 4343 -3777 785 149 8 0 chrY 201686 201820 -24511259 + LOR1-int LTR ERV1 5930 6064 -2056 1304 158 3 28 chrY 201914 202217 -24510862 + MER4A LTR ERV1 261 614 -50 2159 182 7 10 chrY 202229 202646 -24510433 + LOR1a LTR ERV1 82 497 0 2533 121 0 16 chrY 202654 203033 -24510046 + THE1C LTR MaLR 1 373 -2 1943 137 0 0 chrY 203306 203577 -24509502 - AluSx SINE Alu -2 310 40 373 211 44 114 chrY 203767 203994 -24509085 - L1MC5 LINE L1 -94 7867 7657 284 198 44 11 chrY 204033 204124 -24508955 + (TA)n Simple_repeat Simple_repeat 2 95 0 978 243 53 60 chrY 204152 204622 -24508457 - L1MC5 LINE L1 -370 7591 7125 1552 186 7 30 chrY 204838 205161 -24507918 - AluJb SINE Alu 0 316 1 1971 125 45 0 chrY 206142 206431 -24506648 - AluSg SINE Alu -5 305 4 1304 176 137 4 chrY 206461 206723 -24506356 - AluSp SINE Alu -10 303 7 625 226 8 0 chrY 206739 206863 -24506216 - FLAM_C SINE Alu -8 125 1 600 188 91 108 chrY 207059 207120 -24505959 + Charlie1b DNA MER1_type 7 67 -2694 2236 99 0 19 chrY 207120 207434 -24505645 + AluY SINE Alu 1 308 -3 600 188 91 108 chrY 207434 207558 -24505521 + Charlie1b DNA MER1_type 67 189 -334 276 202 134 123 chrY 207562 207854 -24505225 - L1MC4 LINE L1 -830 7131 6837 247 143 18 36 chrY 207851 207907 -24505172 + MLT1B-int LTR MaLR 1680 1734 -1 * 1396 188 122 14 chrY 207908 208260 -24504819 + MLT1B LTR MaLR 1 390 0 450 254 48 8 chrY 209202 209328 -24503751 + FRAM SINE Alu 22 152 -24 794 224 145 28 chrY 209470 209725 -24503354 - AluJo SINE Alu -17 295 11 354 261 92 7 chrY 209969 210111 -24502968 - AluJb SINE Alu -33 269 116 1601 107 110 52 chrY 213014 213305 -24499774 + AluSq SINE Alu 1 308 -5 2286 53 0 69 chrY 213781 214100 -24498979 - AluY SINE Alu -14 297 1 1898 144 10 0 chrY 214378 214669 -24498410 - AluSx SINE Alu -18 294 1 366 42 0 0 chrY 214775 214823 -24498256 + (TA)n Simple_repeat Simple_repeat 1 48 0 180 214 0 0 chrY 215505 215533 -24497546 + L2 LINE L2 3224 3251 -21 785 249 56 9 chrY 216552 216785 -24496294 + Charlie1b DNA MER1_type 12 255 -268 547 198 48 21 chrY 216818 217005 -24496074 + Charlie1b DNA MER1_type 326 517 -6 328 245 173 34 chrY 217026 217291 -24495788 - L1ME LINE L1 -319 5802 5473 1721 188 0 10 chrY 217291 217594 -24495485 - AluSx SINE Alu -12 300 1 328 245 173 34 chrY 217594 217696 -24495383 - L1ME LINE L1 -648 5473 5387 261 0 0 0 chrY 217726 217755 -24495324 + (TG)n Simple_repeat Simple_repeat 2 30 0 1166 215 0 69 chrY 217759 218047 -24495032 - AluJo SINE Alu -44 268 1 21 0 0 0 chrY 218070 218091 -24494988 + AT_rich Low_complexity Low_complexity 1 21 0 293 121 0 17 chrY 218120 218178 -24494901 - Alu SINE Alu 0 302 246 1557 160 3 78 chrY 218186 218517 -24494562 - AluJb SINE Alu -6 306 1 506 181 20 11 chrY 218518 218689 -24494390 - L1M4 LINE L1 -373 5783 5516 341 252 0 3 chrY 218847 219006 -24494073 + HsTC2 DNA Tc2 2 208 -1690 1723 145 30 46 chrY 219078 219381 -24493698 - AluSg SINE Alu -12 298 1 716 269 67 34 chrY 219567 219865 -24493214 + HsTC2 DNA Tc2 1273 1756 -142 418 278 121 64 chrY 220003 220284 -24492795 - L1M4 LINE L1 -2040 4106 3810 2140 117 10 0 chrY 220528 220837 -24492242 - AluSx SINE Alu 0 312 1 207 0 0 0 chrY 221253 221276 -24491803 + (TCCCC)n Simple_repeat Simple_repeat 4 26 0 1378 168 45 62 chrY 221276 221567 -24491512 - AluSx SINE Alu -26 286 1 22 35 0 0 chrY 221825 221854 -24491225 + AT_rich Low_complexity Low_complexity 1 29 0 842 138 0 15 chrY 221911 222041 -24491038 - FLAM_C SINE Alu -5 128 1 22 0 0 0 chrY 222483 222505 -24490574 + AT_rich Low_complexity Low_complexity 1 22 0 1892 102 6 70 chrY 222506 222821 -24490258 + AluSq SINE Alu 1 295 -18 274 309 108 0 chrY 224026 224165 -24488914 + MIR SINE MIR 83 236 -26 330 235 104 17 chrY 224345 224460 -24488619 + L1M4 LINE L1 4481 4605 -1541 1025 215 70 0 chrY 224705 224919 -24488160 - AluJo SINE Alu -77 235 7 1585 203 17 0 chrY 224928 225224 -24487855 - AluJb SINE Alu -11 301 1 1412 199 3 59 chrY 225342 225664 -24487415 + AluJb SINE Alu 2 305 -7 216 238 0 0 chrY 225666 225708 -24487371 + (CA)n Simple_repeat Simple_repeat 1 42 0 288 182 0 0 chrY 225798 225842 -24487237 - AluSp SINE Alu -130 173 130 1420 190 10 24 chrY 225846 226141 -24486938 - AluJb SINE Alu -21 291 1 2188 91 3 36 chrY 227711 228019 -24485060 - AluY SINE Alu -13 298 1 23 33 0 0 chrY 228171 228201 -24484878 + AT_rich Low_complexity Low_complexity 1 30 0 953 190 0 6 chrY 228490 228653 -24484426 + AluJo SINE Alu 121 282 -30 1381 186 41 30 chrY 228850 229145 -24483934 + AluJo SINE Alu 2 299 -3 489 216 24 24 chrY 229375 229500 -24483579 + FLAM_A SINE Alu 12 136 -6 1468 265 74 51 chrY 230045 230193 -24482886 - MLT1E2 LTR MaLR 0 626 483 1225 228 10 54 chrY 230193 230538 -24482541 + AluJo SINE Alu 1 332 0 1468 265 74 51 chrY 230538 230999 -24482080 - MLT1E2 LTR MaLR -143 483 2 760 291 101 55 chrY 231193 231630 -24481449 - MLT1E2-int LTR MaLR -223 1148 692 318 190 25 38 chrY 231722 231880 -24481199 + CT-rich Low_complexity Low_complexity 3 158 0 2679 126 25 25 chrY 231998 232435 -24480644 - MER1A DNA MER1_type 0 529 93 525 274 59 14 chrY 232495 232714 -24480365 - MLT1E2-int LTR MaLR -781 590 362 539 242 83 83 chrY 232716 232957 -24480122 - MLT1E2-int LTR MaLR -957 414 171 1721 181 17 10 chrY 232957 233255 -24479824 - AluJo SINE Alu -12 300 1 539 242 83 83 chrY 233255 233315 -24479764 - MLT1E2-int LTR MaLR -1199 172 113 387 137 27 14 chrY 233425 233498 -24479581 - MLT1E2-int LTR MaLR -1297 74 1 974 285 113 57 chrY 233506 234071 -24479008 - MLT1E2 LTR MaLR -9 617 21 266 246 0 0 chrY 234800 234857 -24478222 + AluJ/FLAM SINE Alu 36 92 -210 398 245 53 60 chrY 235100 235251 -24477828 - MIR SINE MIR -41 221 72 219 139 0 0 chrY 235641 235677 -24477402 + (T)n Simple_repeat Simple_repeat 1 36 0 265 155 17 17 chrY 235683 235741 -24477338 - HY3 scRNA scRNA -7 94 37 189 294 0 0 chrY 235912 235963 -24477116 + MIR SINE MIR 81 131 -77 243 254 0 0 chrY 236587 236658 -24476421 + T-rich Low_complexity Low_complexity 1 71 0 21 0 0 0 chrY 238675 238696 -24474383 + AT_rich Low_complexity Low_complexity 1 21 0 542 276 142 20 chrY 240292 240546 -24472533 + L1M4 LINE L1 9 293 -6249 1312 217 38 0 chrY 240555 240818 -24472261 + AluJo SINE Alu 15 287 -25 3117 246 83 39 chrY 240865 240929 -24472150 + L1M4 LINE L1 321 381 -6265 1722 153 0 51 chrY 240929 241242 -24471837 - AluSx SINE Alu -11 301 5 3117 246 83 39 chrY 241242 242555 -24470524 + L1M4 LINE L1 381 1769 -4877 222 37 0 0 chrY 242556 242583 -24470496 + (TCCC)n Simple_repeat Simple_repeat 4 30 0 459 147 0 0 chrY 242620 242695 -24470384 - AluS SINE Alu -15 296 222 1890 196 103 50 chrY 242700 243242 -24469837 + L1MB7 LINE L1 5557 6127 -57 2150 125 0 0 chrY 243358 243654 -24469425 - AluSx SINE Alu -14 298 3 641 261 111 17 chrY 243692 244046 -24469033 + HAL1b LINE L1 425 781 -567 2254 86 3 13 chrY 244101 244402 -24468677 - AluY SINE Alu -11 300 3 242 282 58 39 chrY 244534 244637 -24468442 - L2 LINE L2 -2 3311 3207 811 310 268 28 chrY 244851 245638 -24467441 - L2 LINE L2 -1323 1991 1016 242 330 86 25 chrY 246821 247018 -24466061 + L2 LINE L2 2531 2739 -575 21 0 0 0 chrY 247445 247466 -24465613 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chrY 247487 247508 -24465571 + AT_rich Low_complexity Low_complexity 1 21 0 1686 164 41 7 chrY 247578 247870 -24465209 + AluSx SINE Alu 1 302 -10 537 273 29 14 chrY 248600 248739 -24464340 + MIR SINE MIR 51 191 -71 1542 190 56 0 chrY 248855 249139 -24463940 - AluSx SINE Alu -12 300 1 1868 131 11 11 chrY 249957 250275 -24462804 - AluSx SINE Alu 0 318 1 1523 207 0 23 chrY 250458 250758 -24462321 + AluJo SINE Alu 1 293 -19 2918 73 0 3 chrY 251470 251851 -24461228 - L1PA8 LINE L1 -14 6158 5779 2278 90 0 17 chrY 251900 252200 -24460879 - AluSc SINE Alu -14 295 1 21 0 0 0 chrY 252432 252453 -24460626 + AT_rich Low_complexity Low_complexity 1 21 0 2470 82 0 16 chrY 252686 253002 -24460077 + AluY SINE Alu 1 311 0 2103 126 10 10 chrY 253290 253600 -24459479 + AluSx SINE Alu 1 310 -2 21 0 0 0 chrY 258249 258270 -24454809 + AT_rich Low_complexity Low_complexity 1 21 0 1620 184 3 32 chrY 258609 258924 -24454155 - AluJo SINE Alu -1 311 6 389 221 58 0 chrY 259141 259245 -24453834 - L1MB5 LINE L1 -11 6163 6054 30 0 0 0 chrY 259495 259525 -24453554 + AT_rich Low_complexity Low_complexity 1 30 0 413 254 27 18 chrY 259620 259730 -24453349 + MER5A DNA MER1_type 24 134 -55 671 180 225 4 chrY 259733 259977 -24453102 - L1MB2 LINE L1 -4 6167 5870 * 2855 242 70 68 chrY 259974 260063 -24453016 - L1M4c LINE L1 -2054 4372 4285 2026 136 3 0 chrY 260063 260358 -24452721 + AluSx SINE Alu 1 296 -16 1674 177 0 24 chrY 260363 260678 -24452401 + AluSx SINE Alu 3 310 0 2855 242 70 68 chrY 260678 260884 -24452195 - L1M4c LINE L1 -2144 4282 4078 2032 136 3 16 chrY 260884 261193 -24451886 - AluSq SINE Alu -8 305 1 1954 137 3 45 chrY 261203 261517 -24451562 - AluSx SINE Alu -11 301 1 2855 242 70 68 chrY 261517 261640 -24451439 - L1M4c LINE L1 -2356 4070 3949 1330 230 42 11 chrY 261640 261923 -24451156 - AluJo SINE Alu -20 292 1 2855 242 70 68 chrY 261923 262040 -24451039 - L1M4c LINE L1 -2477 3949 3834 1624 202 14 3 chrY 262040 262391 -24450688 - L1PA16 LINE L1 -14 6152 5798 2855 242 70 68 chrY 262391 262553 -24450526 - L1M4c LINE L1 -2592 3834 3674 1928 141 17 7 chrY 262553 262844 -24450235 - AluSx SINE Alu -18 294 1 2855 242 70 68 chrY 262844 263056 -24450023 - L1M4c LINE L1 -2752 3674 3464 2069 102 6 67 chrY 263056 263371 -24449708 - AluY SINE Alu -15 296 1 2855 242 70 68 chrY 263371 263640 -24449439 - L1M4c LINE L1 -2962 3464 3197 491 258 0 23 chrY 263640 263768 -24449311 - FLAM_A SINE Alu -8 125 1 2855 242 70 68 chrY 263768 264216 -24448863 - L1M4c LINE L1 -3229 3197 2751 9150 176 28 11 chrY 264216 264530 -24448549 - L1PA13 LINE L1 -4 6159 5852 2288 121 0 0 chrY 264530 264837 -24448242 - AluSg SINE Alu -3 307 1 9150 176 28 11 chrY 264837 265338 -24447741 - L1PA13 LINE L1 -311 5852 5361 2419 89 0 3 chrY 265338 265640 -24447439 - AluY SINE Alu -10 301 1 9150 176 28 11 chrY 265640 267450 -24445629 - L1PA13 LINE L1 -802 5361 3479 2855 242 70 68 chrY 267450 267645 -24445434 - L1M4c LINE L1 -3675 2751 2523 195 129 0 0 chrY 267723 267754 -24445325 + (T)n Simple_repeat Simple_repeat 1 31 0 1727 184 21 0 chrY 267769 268057 -24445022 - AluSx SINE Alu -12 300 7 645 186 108 44 chrY 268080 268375 -24444704 - L1M4c LINE L1 -3979 2449 2136 582 208 26 3 chrY 268435 268608 -24444471 - L1M4c LINE L1 -4707 1721 1539 251 306 22 30 chrY 268635 268769 -24444310 - L1M4c LINE L1 -6008 349 217 260 171 26 118 chrY 268832 268908 -24444171 + MER5A DNA MER1_type 121 189 0 2177 133 0 3 chrY 269002 269310 -24443769 + AluSx SINE Alu 1 307 -5 229 311 0 0 chrY 269843 269917 -24443162 + (TATG)n Simple_repeat Simple_repeat 3 76 0 928 147 179 62 chrY 270130 270354 -24442725 - AluJb SINE Alu -54 258 9 399 188 134 0 chrY 270398 270510 -24442569 - L1 LINE L1 -1286 4860 4734 3391 196 57 82 chrY 271065 271765 -24441314 - L1 LINE L1 -1913 4233 3491 493 191 0 0 chrY 271765 271849 -24441230 - AluJb SINE Alu -17 295 212 3391 196 57 82 chrY 271849 272310 -24440769 - L1 LINE L1 -2655 3491 3020 2619 207 52 3 chrY 272323 272957 -24440122 + L1MA7 LINE L1 5615 6279 -12 359 218 0 0 chrY 272958 273045 -24440034 + L1MB2 LINE L1 6051 6137 -34 3867 129 25 134 chrY 273184 274733 -24438346 - pTR5 LTR ERV1 0 2606 1524 548 160 109 51 chrY 275186 275342 -24437737 + MER65A LTR ERV1 2 166 -279 1991 173 70 2 chrY 275457 275856 -24437223 - MSTA LTR MaLR -2 426 1 943 174 26 10 chrY 275874 276184 -24436895 + MER65A LTR ERV1 166 445 0 502 145 13 0 chrY 276255 276331 -24436748 - AluS SINE Alu -230 82 6 591 259 112 0 chrY 276351 276637 -24436442 + L1MB2 LINE L1 4105 4422 -1724 1753 164 7 14 chrY 276639 276931 -24436148 - AluSp SINE Alu -22 291 2 2072 203 46 5 chrY 276931 277892 -24435187 + L1MB2 LINE L1 5121 6163 -8 2675 148 93 22 chrY 278228 278784 -24434295 + LTR4 LTR ERV1 1 596 0 12080 160 55 21 chrY 278784 281010 -24432069 + HERV3 LTR ERV1 2 2302 -6124 1819 252 5 2 chrY 281023 281447 -24431632 + HERV3 LTR ERV1 2729 3153 -5273 2271 126 12 0 chrY 281462 281803 -24431276 + HERV3 LTR ERV1 5421 5765 -2661 2311 143 24 7 chrY 281803 282223 -24430856 + LTR4 LTR ERV1 170 596 0 455 315 79 57 chrY 282573 283014 -24430065 + LTR67 LTR ERVL 2 452 -105 283 284 46 0 chrY 283141 283250 -24429829 - LTR33 LTR ERVL -41 480 367 420 311 74 26 chrY 283515 283827 -24429252 + LTR40b LTR ERVL 135 461 -1 453 291 97 0 chrY 283886 284082 -24428997 - LTR33 LTR ERVL -306 215 1 6806 204 149 15 chrY 284384 285932 -24427147 - MER52A LTR ERV1 0 1755 1 516 206 41 0 chrY 285976 286073 -24427006 + AluJ/FLAM SINE Alu 1 101 -211 27 49 0 0 chrY 286925 286966 -24426113 + AT_rich Low_complexity Low_complexity 1 41 0 432 258 55 73 chrY 287339 287777 -24425302 - L1MC5 LINE L1 -368 7593 7164 379 219 0 0 chrY 287800 287882 -24425197 + MER45A DNA AcHobo 97 178 0 2603 133 36 2 chrY 288181 288625 -24424454 - MER4E-int LTR ERV1 -6299 459 1 4791 104 33 13 chrY 288625 289176 -24423903 - MER4E LTR ERV1 0 766 195 1607 161 8 4 chrY 289176 289431 -24423648 + AluY SINE Alu 39 294 -17 4791 104 33 13 chrY 289431 289630 -24423449 - MER4E LTR ERV1 -571 195 1 1221 201 21 61 chrY 289675 290004 -24423075 - LTR62 LTR ERVK -403 316 1 2248 102 0 3 chrY 290204 290507 -24422572 - AluY SINE Alu -9 302 1 252 167 0 0 chrY 290539 290587 -24422492 + (TTCA)n Simple_repeat Simple_repeat 1 48 0 230 158 18 35 chrY 290609 290666 -24422413 - LTR56 LTR ERV1 -381 64 9 2485 195 46 20 chrY 290767 291358 -24421721 - MER4B LTR ERV1 -4 606 1 410 159 53 61 chrY 291451 291583 -24421496 - MER4B-int LTR ERV1 -151 4972 4842 383 145 0 0 chrY 291662 291724 -24421355 - MER4A LTR ERV1 0 664 603 1731 89 12 0 chrY 291724 291983 -24421096 - L1P LINE L1 -1332 4814 4553 1808 102 0 37 chrY 291983 292277 -24420802 - L1P LINE L1 -2229 3917 3635 3528 99 25 14 chrY 292280 292844 -24420235 - L1P LINE L1 -1635 4511 3942 1581 205 7 13 chrY 293038 293341 -24419738 - AluSx SINE Alu -11 301 1 1896 157 14 0 chrY 293381 293675 -24419404 - AluSq SINE Alu -14 299 2 1227 70 0 64 chrY 294975 295162 -24417917 - AluY SINE Alu -24 287 113 3386 160 56 3 chrY 295208 295820 -24417259 - LTR9B LTR ERV1 0 644 1 2388 69 3 31 chrY 296331 296651 -24416428 + AluY SINE Alu 1 311 0 880 168 125 87 chrY 297724 298045 -24415034 - LTR56 LTR ERV1 -108 337 5 203 269 177 28 chrY 298224 298365 -24414714 - MIR SINE MIR -34 228 67 2034 193 7 7 chrY 298427 298877 -24414202 - L1PA13 LINE L1 -4590 2197 1748 591 115 10 10 chrY 298875 298979 -24414100 - L1PA13 LINE L1 -6625 162 59 * 3883 142 29 5 chrY 298982 299628 -24413451 - PABL_B LTR ERV1 -5 662 1 261 218 0 0 chrY 299629 299684 -24413395 - L1PA13 LINE L1 -6732 55 1 2646 276 81 31 chrY 299862 300282 -24412797 - L1M4 LINE L1 -2012 5553 5155 2124 120 0 25 chrY 300282 300598 -24412481 - AluSc SINE Alu -1 308 1 2646 276 81 31 chrY 300598 300708 -24412371 - L1M4 LINE L1 -2410 5155 5052 1755 163 11 0 chrY 300708 300984 -24412095 - AluSx SINE Alu -33 279 1 2646 276 81 31 chrY 300984 302263 -24410816 - L1M4 LINE L1 -2513 5052 3653 24 85 0 0 chrY 302293 302352 -24410727 + AT_rich Low_complexity Low_complexity 1 59 0 28040 62 4 1 chrY 302644 308786 -24404293 - L1PA6 LINE L1 -1 6153 3 10949 179 57 10 chrY 308787 310971 -24402108 - L1M4 LINE L1 -4220 3345 1060 841 153 6 6 chrY 310977 311140 -24401939 + CT-rich Low_complexity Low_complexity 3 165 0 852 194 19 0 chrY 311143 311303 -24401776 - AluSg/x SINE Alu -5 307 145 581 214 40 0 chrY 311918 312044 -24401035 - MLT1A1 LTR MaLR 0 365 235 1218 211 146 44 chrY 312944 313356 -24399723 + MSTB2 LTR MaLR 4 457 0 216 298 160 0 chrY 313373 313467 -24399612 - MIR SINE MIR -66 196 88 1743 167 3 16 chrY 313593 313899 -24399180 - AluSx SINE Alu 0 312 11 214 273 0 0 chrY 313984 314028 -24399051 - MER5B DNA MER1_type -1 177 134 909 203 5 0 chrY 314037 314224 -24398855 + L1PA15 LINE L1 5972 6159 -6 5413 134 25 17 chrY 314224 315152 -24397927 + L1MA2 LINE L1 5369 6303 -1 24 32 0 0 chrY 315212 315243 -24397836 + AT_rich Low_complexity Low_complexity 1 31 0 1967 154 31 58 chrY 315278 315726 -24397353 + LTR19A LTR ERV1 1 436 -50 1536 142 3 75 chrY 315726 316008 -24397071 - AluJb SINE Alu -36 276 15 901 333 23 26 chrY 316148 316575 -24396504 - LTR16B LTR ERVL -2 462 37 254 232 18 0 chrY 316702 316758 -24396321 + MLT1J LTR MaLR 110 166 -345 183 80 0 0 chrY 316985 317010 -24396069 + (A)n Simple_repeat Simple_repeat 1 25 0 366 145 0 0 chrY 317012 317074 -24396005 + LTR19A LTR ERV1 425 486 0 1843 171 7 0 chrY 317302 317595 -24395484 - AluSx SINE Alu -17 295 1 210 37 0 0 chrY 317908 317935 -24395144 + (TTG)n Simple_repeat Simple_repeat 1 27 0 683 268 145 11 chrY 318469 318738 -24394341 - MER2 DNA MER2_type -1 344 40 536 241 96 8 chrY 319052 319241 -24393838 + L1MB4 LINE L1 5907 6120 -60 942 242 33 5 chrY 319245 319456 -24393623 + AluJo SINE Alu 78 294 -18 2655 236 64 70 chrY 319548 320966 -24392113 - L1MD1 LINE L1 -10 6232 4822 185 333 16 57 chrY 321005 321128 -24391951 + MIR SINE MIR 43 160 -102 213 121 0 0 chrY 322609 322642 -24390437 + (TCCC)n Simple_repeat Simple_repeat 4 36 0 * 973 199 106 43 chrY 322641 323104 -24389975 - AluJo SINE Alu 0 493 13 10078 150 29 5 chrY 323132 325705 -24387374 - L1PA10 LINE L1 -3 6165 3551 15113 156 29 47 chrY 325709 332279 -24380800 - L1PB1 LINE L1 -278 6589 127 180 392 65 30 chrY 332347 332579 -24380500 - L2 LINE L2 -582 2732 2493 38 39 0 0 chrY 332690 332742 -24380337 + AT_rich Low_complexity Low_complexity 1 52 0 308 298 33 8 chrY 333456 333577 -24379502 + L2 LINE L2 2934 3057 -215 217 132 26 0 chrY 334224 334262 -24378817 - L2 LINE L2 -3 3310 3272 3923 214 55 33 chrY 336937 337430 -24375649 - L1MC2 LINE L1 -2 6342 5861 2412 71 13 0 chrY 337430 337739 -24375340 - AluSp SINE Alu 0 313 1 3923 214 55 33 chrY 337739 338931 -24374148 - L1MC2 LINE L1 -483 5861 4617 24 0 0 0 chrY 338975 338999 -24374080 + AT_rich Low_complexity Low_complexity 1 24 0 29 0 0 0 chrY 339467 339496 -24373583 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chrY 339543 339568 -24373511 + AT_rich Low_complexity Low_complexity 1 25 0 195 42 0 0 chrY 339580 339604 -24373475 + (TG)n Simple_repeat Simple_repeat 2 25 0 24 32 0 0 chrY 340142 340173 -24372906 + AT_rich Low_complexity Low_complexity 1 31 0 234 62 0 0 chrY 340804 340836 -24372243 + (TTTTG)n Simple_repeat Simple_repeat 1 32 0 352 100 0 0 chrY 340843 340893 -24372186 - Alu SINE Alu -27 274 225 942 168 7 0 chrY 340893 341042 -24372037 - AluSq SINE Alu -160 153 4 2472 57 0 7 chrY 341846 342144 -24370935 - AluY SINE Alu -15 296 1 1030 281 44 19 chrY 342182 342499 -24370580 + L1MCc LINE L1 892 1216 -5207 324 265 144 8 chrY 342561 342693 -24370386 + Zaphod DNA AcHobo 3854 4003 -28 266 276 80 35 chrY 342974 343173 -24369906 - L1M4 LINE L1 -611 5573 5366 258 253 63 25 chrY 343184 343263 -24369816 - L2 LINE L2 -1 3312 3231 1111 267 48 23 chrY 344789 345230 -24367849 - MLT1H LTR MaLR 0 549 75 3591 222 23 15 chrY 345241 346315 -24366764 + L1P4 LINE L1 4398 5476 -689 645 124 10 0 chrY 346355 346452 -24366627 + AluY SINE Alu 95 192 -119 2430 137 15 33 chrY 346453 346880 -24366199 - L1PA16 LINE L1 -261 5905 5485 2373 96 3 0 chrY 346880 347192 -24365887 - AluSp SINE Alu 0 313 1 2430 137 15 33 chrY 347192 347218 -24365861 - L1PA16 LINE L1 -681 5485 5460 1517 97 0 0 chrY 347218 347432 -24365647 + L1PA14 LINE L1 5942 6157 -4 984 285 40 14 chrY 347560 347984 -24365095 - L1M4 LINE L1 -2448 3698 3264 192 40 0 0 chrY 348041 348066 -24365013 + (ATG)n Simple_repeat Simple_repeat 2 26 0 23 0 0 0 chrY 348120 348143 -24364936 + AT_rich Low_complexity Low_complexity 1 23 0 230 303 0 15 chrY 348181 348247 -24364832 - MIR SINE MIR -165 97 33 804 198 48 52 chrY 348292 348544 -24364535 + pTR5 LTR ERV1 743 993 -1445 3949 118 72 35 chrY 348611 349273 -24363806 + LTR12 LTR ERV1 1 687 -1 1656 155 11 11 chrY 349353 349624 -24363455 + AluSx SINE Alu 1 271 -41 277 118 43 21 chrY 349626 349719 -24363360 + (TTATA)n Simple_repeat Simple_repeat 5 99 0 370 296 91 26 chrY 350201 350431 -24362648 - L1ME4a LINE L1 -179 5942 5698 222 37 0 0 chrY 350433 350460 -24362619 + (TG)n Simple_repeat Simple_repeat 2 28 0 1608 186 13 13 chrY 350664 350975 -24362104 - AluJo SINE Alu -1 311 1 30 27 0 0 chrY 351034 351071 -24362008 + AT_rich Low_complexity Low_complexity 1 37 0 1858 183 70 79 chrY 351421 351980 -24361099 - MLT2B3 LTR ERVL 0 554 1 261 255 106 21 chrY 352412 352506 -24360573 + MIR SINE MIR 124 225 -37 321 201 43 30 chrY 353801 353965 -24359114 + (TA)n Simple_repeat Simple_repeat 2 167 0 210 208 0 0 chrY 353971 354019 -24359060 + (CATATA)n Simple_repeat Simple_repeat 5 52 0 1511 157 36 25 chrY 354130 354410 -24358669 + AluJo SINE Alu 12 294 -18 1008 194 16 42 chrY 354592 354814 -24358265 + L1MDa LINE L1 1106 1319 -5221 1888 218 5 20 chrY 354814 355214 -24357865 + MSTD LTR MaLR 3 396 0 1008 194 16 42 chrY 355214 355300 -24357779 + L1MDa LINE L1 1319 1406 -5134 326 202 36 24 chrY 355320 355404 -24357675 + MER45C DNA AcHobo 528 612 -341 1001 251 31 0 chrY 355618 356041 -24357038 - L1M4 LINE L1 -2961 3185 2750 698 273 80 0 chrY 356048 356286 -24356793 + L1MDa LINE L1 2931 3187 -3353 201 175 0 0 chrY 356375 356415 -24356664 + (TA)n Simple_repeat Simple_repeat 1 40 0 486 170 98 45 chrY 356417 356529 -24356550 + Tigger7 DNA MER2_type 2374 2491 0 465 253 19 6 chrY 356529 356691 -24356388 - L1MCa LINE L1 -3712 2714 2551 424 171 0 0 chrY 356716 356804 -24356275 - L1MA4 LINE L1 0 6300 6213 613 189 12 30 chrY 356804 356956 -24356123 - L1MCa LINE L1 -3892 2536 2414 796 266 40 0 chrY 357199 357376 -24355703 + L1PA13 LINE L1 1 184 -6603 2240 232 18 11 chrY 357388 357935 -24355144 + L1PA13 LINE L1 1728 2278 -4509 281 132 0 19 chrY 357974 358027 -24355052 + (TA)n Simple_repeat Simple_repeat 1 52 0 231 186 0 17 chrY 358028 358087 -24354992 - L1MCa LINE L1 -4363 2063 2006 231 186 0 17 chrY 358112 358171 -24354908 - L1MCa LINE L1 -4363 2063 2006 188 108 0 27 chrY 358175 358212 -24354867 + (TA)n Simple_repeat Simple_repeat 2 37 0 311 270 0 0 chrY 358212 358286 -24354793 + L1PA13 LINE L1 2376 2449 -4348 5392 144 6 2 chrY 358286 359832 -24353247 + L1PA15 LINE L1 4593 6146 -19 418 343 33 9 chrY 359900 360110 -24352969 - L1M4 LINE L1 -1548 4598 4384 24 0 0 0 chrY 360121 360145 -24352934 + AT_rich Low_complexity Low_complexity 1 24 0 5153 203 16 19 chrY 360233 362377 -24350702 - L1PA15 LINE L1 -16 6149 4020 325 71 0 0 chrY 362371 362413 -24350666 - L1P LINE L1 -972 5174 5133 * 529 263 41 0 chrY 362432 362603 -24350476 + L1M4b LINE L1 1326 1503 -5356 7236 214 17 67 chrY 362638 363368 -24349711 - L1P LINE L1 -1023 5123 4358 1689 168 16 13 chrY 363368 363671 -24349408 - AluJb SINE Alu -4 308 5 7236 214 17 67 chrY 363671 363878 -24349201 - L1P LINE L1 -1788 4358 4142 3858 107 32 11 chrY 363878 364505 -24348574 + MER51C LTR ERV1 1 640 0 7236 214 17 67 chrY 364505 365761 -24347318 - L1P LINE L1 -2004 4142 3039 2083 297 69 25 chrY 365766 367143 -24345936 - L1M4b LINE L1 -5331 1528 12 1973 122 20 3 chrY 367538 367841 -24345238 + AluSg SINE Alu 1 308 -2 305 369 20 30 chrY 368376 368574 -24344505 + L1 LINE L1 3631 3826 -2320 418 195 35 44 chrY 368909 369022 -24344057 + Charlie4 DNA MER1_type 1835 1946 -15 417 331 24 52 chrY 369034 369282 -24343797 + LTR33 LTR ERVL 260 500 -21 944 313 74 18 chrY 370551 370941 -24342138 - L2 LINE L2 -447 2867 2456 207 204 0 0 chrY 371029 371073 -24342006 + GA-rich Low_complexity Low_complexity 3 46 0 514 179 28 9 chrY 371236 371342 -24341737 - L1MA1 LINE L1 -4 6298 6191 809 287 35 8 chrY 371541 371795 -24341284 - L2 LINE L2 -853 2461 2201 189 0 0 0 chrY 372167 372188 -24340891 + (CA)n Simple_repeat Simple_repeat 2 22 0 2942 115 23 6 chrY 373892 374372 -24338707 - L1MA3 LINE L1 0 6305 5818 362 85 17 0 chrY 374844 374903 -24338176 + (TAGA)n Simple_repeat Simple_repeat 2 61 0 2122 245 32 14 chrY 374905 375434 -24337645 - MLT2B3 LTR ERVL -19 507 1 1077 95 25 0 chrY 375679 375837 -24337242 - L1MA3 LINE L1 0 6305 6144 225 94 0 0 chrY 375838 375870 -24337209 + L1MA3 LINE L1 5929 5960 -345 1523 197 42 52 chrY 376052 376458 -24336621 - MER39 LTR ERV1 0 707 306 1387 173 54 45 chrY 376659 376879 -24336200 - MER44D DNA MER2_type -1883 608 391 213 39 0 0 chrY 376879 376905 -24336174 + (TC)n Simple_repeat Simple_repeat 1 26 0 1387 173 54 45 chrY 376905 377019 -24336060 - MER44D DNA MER2_type -2100 391 1 541 176 11 0 chrY 377615 377706 -24335373 + MLT1D LTR MaLR 1 92 -413 247 303 55 9 chrY 377866 377975 -24335104 - L1ME LINE L1 -477 5644 5531 324 0 0 0 chrY 378087 378123 -24334956 + (TG)n Simple_repeat Simple_repeat 2 37 0 677 243 87 0 chrY 378188 378361 -24334718 + MER20 DNA MER1_type 31 218 -1 238 136 17 17 chrY 378738 378797 -24334282 + (TG)n Simple_repeat Simple_repeat 2 60 0 532 297 25 29 chrY 378981 379233 -24333846 - L1ME3A LINE L1 -290 5880 5669 329 259 133 7 chrY 379249 379384 -24333695 - Charlie2a DNA MER1_type 0 2862 2711 * 467 247 77 12 chrY 379380 379550 -24333529 - Charlie2a DNA MER1_type -1200 1662 1482 399 325 81 10 chrY 379762 379959 -24333120 - Charlie2a DNA MER1_type -2555 307 97 616 295 89 47 chrY 380221 380624 -24332455 - LTR38 LTR ERV1 0 556 137 339 338 92 29 chrY 380683 381403 -24331676 - L1ME LINE L1 -749 5397 4633 348 309 65 22 chrY 381469 381883 -24331196 - L1ME LINE L1 -3158 2988 2557 404 236 11 0 chrY 381938 382027 -24331052 - Tigger5 DNA MER2_type 0 2323 2234 362 233 0 0 chrY 382078 382151 -24330928 - Tigger5 DNA MER2_type 0 2323 2251 240 284 0 0 chrY 382170 382244 -24330835 + (TA)n Simple_repeat Simple_repeat 2 75 0 258 278 0 0 chrY 382325 382415 -24330664 - L1ME LINE L1 -3783 2363 2274 22 56 0 0 chrY 383120 383156 -24329923 + AT_rich Low_complexity Low_complexity 1 36 0 24 53 0 0 chrY 383573 383611 -24329468 + AT_rich Low_complexity Low_complexity 1 38 0 9287 207 15 18 chrY 383960 385224 -24327855 + L1P LINE L1 2304 3560 -2586 255 103 0 0 chrY 385224 385263 -24327816 + (TG)n Simple_repeat Simple_repeat 2 40 0 9287 207 15 18 chrY 385263 386055 -24327024 + L1P LINE L1 3560 4353 -1793 439 319 79 37 chrY 386224 386795 -24326284 - L1ME3A LINE L1 -300 5870 5276 255 255 125 25 chrY 386832 387032 -24326047 - L1ME3A LINE L1 -913 5233 5014 266 91 0 55 chrY 387047 387102 -24325977 - AluSp/q SINE Alu -5 298 247 2206 123 0 0 chrY 387366 387675 -24325404 - AluSx SINE Alu -3 309 1 757 231 72 57 chrY 388285 388643 -24324436 + MLT2B2 LTR ERVL 1 453 -62 476 26 65 0 chrY 388643 388720 -24324359 + (TCTA)n Simple_repeat Simple_repeat 3 84 0 757 231 72 57 chrY 388720 388784 -24324295 + MLT2B2 LTR ERVL 453 515 0 315 258 88 57 chrY 388822 389016 -24324063 - L1ME3A LINE L1 -1664 4482 4283 320 358 95 15 chrY 389314 389588 -24323491 - L1ME3A LINE L1 -1834 4312 4017 267 336 88 15 chrY 389711 390053 -24323026 - L1ME3A LINE L1 -2227 3919 3553 443 224 195 29 chrY 390181 390427 -24322652 - L1ME3A LINE L1 -2664 3482 3196 538 259 92 80 chrY 390439 390863 -24322216 + LTR68 LTR ERV1 1 429 -311 423 215 86 57 chrY 391013 391222 -24321857 - L1ME3A LINE L1 -2961 3185 2971 1259 260 34 47 chrY 391526 391738 -24321341 - L1MD2 LINE L1 -2 6357 6144 1909 160 3 6 chrY 391738 392050 -24321029 - AluSx SINE Alu -1 311 1 1259 260 34 47 chrY 392050 392280 -24320799 - L1MD2 LINE L1 -215 6144 5921 555 128 0 0 chrY 392362 392448 -24320631 - L1P4 LINE L1 -523 5638 5553 753 103 8 23 chrY 392458 392728 -24320351 + (TA)n Simple_repeat Simple_repeat 1 266 0 2961 136 12 10 chrY 392728 393229 -24319850 + L1PA14 LINE L1 5658 6159 -2 627 257 229 43 chrY 393498 393778 -24319301 + L1M4b LINE L1 91 422 -6437 527 265 73 0 chrY 393789 393925 -24319154 + L1M4b LINE L1 1130 1275 -5584 2145 273 45 11 chrY 393957 394920 -24318159 - L1MDb LINE L1 -2935 3471 2477 226 176 39 0 chrY 394900 394951 -24318128 + L1MA9 LINE L1 6254 6306 -6 * 1217 255 45 48 chrY 394960 395835 -24317244 - L1MDb LINE L1 -3900 2508 1543 2242 153 50 13 chrY 395858 396323 -24316756 - L1MA3 LINE L1 0 6305 5824 212 158 0 0 chrY 396366 396404 -24316675 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 6157 220 49 10 chrY 396482 397864 -24315215 + L1M3 LINE L1 118 1553 -5310 4373 120 1 3 chrY 397863 398519 -24314560 + L1PB2 LINE L1 5380 6034 -117 * 2190 198 34 15 chrY 398526 399369 -24313710 + L1M3 LINE L1 5564 6426 -458 381 287 41 0 chrY 399368 399540 -24313539 - L1MDb LINE L1 -5542 867 663 * 274 335 151 11 chrY 399549 399734 -24313345 - L1MDb LINE L1 -5822 587 377 * 1263 309 60 35 chrY 399720 400284 -24312795 - L1MDb LINE L1 -5810 599 22 350 325 13 44 chrY 400321 400461 -24312618 - L1MEc LINE L1 -3611 2518 2386 1378 259 117 45 chrY 400461 401043 -24312036 - MLT1E2 LTR MaLR -2 624 1 350 325 13 44 chrY 401043 401130 -24311949 - L1MEc LINE L1 -3743 2386 2298 489 334 119 39 chrY 401168 402103 -24310976 - L1MEc LINE L1 -4049 2261 1252 387 301 51 10 chrY 402164 402360 -24310719 - L1MEc LINE L1 -4969 1150 947 23 0 0 0 chrY 402364 402387 -24310692 + AT_rich Low_complexity Low_complexity 1 23 0 362 291 72 66 chrY 403354 403725 -24309354 - L1MEc LINE L1 -5146 989 571 324 308 0 0 chrY 404004 404121 -24308958 - MER103 DNA DNA -48 118 2 231 61 0 0 chrY 404378 404411 -24308668 + (CA)n Simple_repeat Simple_repeat 2 34 0 1310 158 45 17 chrY 406333 406625 -24306454 + L1MA8 LINE L1 5987 6286 -5 1836 134 113 30 chrY 407381 407717 -24305362 + THE1B LTR MaLR 1 364 0 417 208 40 40 chrY 408143 408268 -24304811 + MER112 DNA MER1_type 84 208 -52 22 70 0 0 chrY 408443 408486 -24304593 + AT_rich Low_complexity Low_complexity 1 43 0 21 36 0 0 chrY 408620 408648 -24304431 + AT_rich Low_complexity Low_complexity 1 28 0 221 327 93 9 chrY 408959 409066 -24304013 + L2 LINE L2 3153 3268 -4 192 150 50 0 chrY 409130 409170 -24303909 + L2 LINE L2 3271 3312 -1 734 239 35 70 chrY 409822 410081 -24302998 - L1ME2 LINE L1 -1 6163 5914 381 275 50 39 chrY 410084 410364 -24302715 - L1ME2 LINE L1 -329 5835 5553 235 364 35 38 chrY 410858 411036 -24302043 + MIR3 SINE MIR 18 167 -41 942 247 56 3 chrY 412254 412606 -24300473 - L1MC3 LINE L1 -201 6143 5742 758 153 0 0 chrY 412616 412740 -24300339 - L1PA15 LINE L1 -3 6162 6039 4387 101 38 0 chrY 412917 413553 -24299526 + HERVL-A2 LTR ERVL 4995 5654 0 429 102 0 0 chrY 413553 413612 -24299467 + MLT2A2 LTR ERVL 1 59 -394 3180 139 5 10 chrY 413612 414173 -24298906 - L1PA15 LINE L1 -386 5779 5220 * 3728 216 29 1 chrY 414170 414975 -24298104 + L1P LINE L1 1831 2657 -3489 556 245 95 15 chrY 415015 415308 -24297771 - MER52A LTR ERV1 -148 894 275 680 257 29 11 chrY 415349 415524 -24297555 - LTR28 LTR ERV1 -842 178 1 1294 245 17 0 chrY 415526 415873 -24297206 + L1P LINE L1 2660 3012 -3134 2007 132 46 34 chrY 417297 417646 -24295433 - THE1B LTR MaLR -11 353 1 9496 137 75 0 chrY 417646 419116 -24293963 - THE1B-int LTR MaLR 0 1580 1 1949 146 36 36 chrY 419116 419479 -24293600 - THE1B LTR MaLR 0 364 2 388 325 34 3 chrY 419558 419698 -24293381 - MIR SINE MIR -63 145 25 183 364 24 73 chrY 419691 419897 -24293182 + L2 LINE L2 2438 2633 -681 * 1168 268 47 14 chrY 420224 420479 -24292600 + L1ME1 LINE L1 4822 5067 -1079 552 100 0 0 chrY 420479 420559 -24292520 + (TA)n Simple_repeat Simple_repeat 1 80 0 1168 268 47 14 chrY 420559 420796 -24292283 + L1ME1 LINE L1 5067 5330 -816 2051 156 43 0 chrY 420804 421151 -24291928 - THE1B LTR MaLR -2 362 1 8356 124 115 40 chrY 421151 422621 -24290458 - THE1B-int LTR MaLR 0 1580 1 2570 123 0 3 chrY 422621 422986 -24290093 - THE1B LTR MaLR 0 364 1 1574 281 78 33 chrY 422990 423326 -24289753 + L1ME1 LINE L1 5333 5652 -514 315 0 0 0 chrY 423326 423361 -24289718 + (CA)n Simple_repeat Simple_repeat 2 36 0 1574 281 78 33 chrY 423361 423803 -24289276 + L1ME1 LINE L1 5652 6146 -20 18128 181 30 15 chrY 423953 431559 -24281520 - L1MA1 LINE L1 0 7721 7 328 350 13 32 chrY 431692 431849 -24281230 - L2 LINE L2 -12 3301 3148 2925 199 24 13 chrY 431849 432468 -24280611 - MSTB-int LTR MaLR -992 659 34 1531 231 81 13 chrY 432487 432881 -24280198 - MSTB LTR MaLR -5 421 1 21 36 0 0 chrY 433543 433571 -24279508 + AT_rich Low_complexity Low_complexity 1 28 0 1146 207 97 60 chrY 434118 434470 -24278609 + MLT1A1 LTR MaLR 1 365 0 1417 239 0 13 chrY 434724 435038 -24278041 + AluJo SINE Alu 1 310 -2 21 57 0 0 chrY 435229 435264 -24277815 + AT_rich Low_complexity Low_complexity 1 35 0 23 78 0 0 chrY 435558 435609 -24277470 + AT_rich Low_complexity Low_complexity 1 51 0 34 0 0 0 chrY 436106 436140 -24276939 + AT_rich Low_complexity Low_complexity 1 34 0 2262 147 39 0 chrY 436384 436745 -24276334 - THE1C LTR MaLR 0 375 1 8822 136 57 37 chrY 436745 438295 -24274784 - THE1C-int LTR MaLR 0 1580 1 2573 121 5 0 chrY 438295 438668 -24274411 - THE1C LTR MaLR 0 375 1 28 86 0 0 chrY 439214 439284 -24273795 + AT_rich Low_complexity Low_complexity 1 70 0 39 38 0 0 chrY 439362 439415 -24273664 + AT_rich Low_complexity Low_complexity 1 53 0 21 36 0 0 chrY 440040 440068 -24273011 + AT_rich Low_complexity Low_complexity 1 28 0 1518 218 0 19 chrY 440367 440674 -24272405 - AluJb SINE Alu -9 303 3 2001 127 3 13 chrY 440687 440986 -24272093 - AluSp SINE Alu -17 296 1 8175 204 19 2 chrY 441206 442733 -24270346 - THE1C-int LTR MaLR -98 1553 1 1754 196 132 8 chrY 442733 443111 -24269968 - MSTA LTR MaLR -2 426 2 453 275 92 34 chrY 444549 445139 -24267940 + L1MEc LINE L1 1904 2487 -3728 2660 267 48 13 chrY 445238 446190 -24266889 - L1MB8 LINE L1 -2 6176 5187 3140 181 66 20 chrY 446211 446909 -24266170 - L1MA8 LINE L1 -4 7247 6518 2133 151 109 53 chrY 446923 446991 -24266088 + LOR1a LTR ERV1 1 64 -433 2631 147 95 42 chrY 446991 447570 -24265509 + LTR66 LTR ERVL 1 610 0 2133 151 109 53 chrY 447570 447590 -24265489 + LOR1a LTR ERV1 64 81 -416 2148 118 3 0 chrY 447590 447894 -24265185 - AluSp SINE Alu -8 305 1 2133 151 109 53 chrY 447894 448273 -24264806 + LOR1a LTR ERV1 81 495 -2 858 225 16 5 chrY 448274 448465 -24264614 - L1MA8 LINE L1 -2103 5003 4811 192 77 0 0 chrY 448465 448491 -24264588 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1447 225 0 7 chrY 448493 448777 -24264302 - AluJo SINE Alu -30 282 1 553 162 27 0 chrY 448785 448896 -24264183 - L1MA8 LINE L1 -4977 2053 1940 2433 273 59 15 chrY 448925 449973 -24263106 - L1MB8 LINE L1 -1201 4945 3852 1876 169 14 6 chrY 450037 450381 -24262698 - L1PA15 LINE L1 -3 6813 6467 6910 59 10 2 chrY 450401 451550 -24261529 - L1PA7 LINE L1 -11 6143 4998 13868 230 29 12 chrY 451550 456716 -24256363 - L1PA15 LINE L1 -340 6476 1212 1079 281 59 23 chrY 456730 457393 -24255686 - L1MB8 LINE L1 -2354 3792 3106 1219 206 0 46 chrY 457743 458005 -24255074 + AluJb SINE Alu 1 250 -62 530 259 43 0 chrY 458024 458186 -24254893 + L1MA7 LINE L1 6111 6279 -12 21 0 0 0 chrY 458187 458208 -24254871 + AT_rich Low_complexity Low_complexity 1 21 0 401 308 70 29 chrY 458332 458916 -24254163 + L1MC/D LINE L1 4991 5600 -566 621 235 126 10 chrY 458939 459158 -24253921 - L1MCc LINE L1 -6105 836 68 288 281 79 6 chrY 459265 459429 -24253650 - L1MCc LINE L1 -4458 2483 2308 3229 141 30 20 chrY 459438 459979 -24253100 - MER41A LTR ERV1 -8 546 1 1941 127 27 3 chrY 459979 460279 -24252800 - MER41A-int LTR ERV1 -2 5944 5638 * 10164 139 40 25 chrY 460276 463035 -24250044 - MER41A-int LTR ERV1 -462 4553 2167 681 158 0 0 chrY 463034 463148 -24249931 - MER41A-int LTR ERV1 -3932 2014 1901 * 2453 160 27 13 chrY 463150 463740 -24249339 - MER41A-int LTR ERV1 -4231 3585 648 * 5262 140 47 6 chrY 463723 464547 -24248532 - MER41B-int LTR ERV1 -5087 859 2 1334 127 5 0 chrY 464548 464745 -24248334 - MER41B LTR ERV1 0 635 438 4464 77 106 2 chrY 464789 465412 -24247667 + LTR12 LTR ERV1 1 688 0 21 0 0 0 chrY 465419 465440 -24247639 + AT_rich Low_complexity Low_complexity 1 21 0 1114 218 306 10 chrY 465472 465867 -24247212 + MER101B LTR ERV1 8 519 -51 192 158 0 0 chrY 466009 466047 -24247032 + (CA)n Simple_repeat Simple_repeat 2 39 0 247 170 0 0 chrY 466066 466113 -24246966 - L1MCc LINE L1 -5104 1837 1791 859 293 90 47 chrY 466139 466814 -24246265 - L1MCc LINE L1 -4903 1520 817 336 288 37 122 chrY 467002 467405 -24245674 - L1MCc LINE L1 -5629 793 84 1748 252 103 18 chrY 467532 468723 -24244356 - L1MC4 LINE L1 -130 7912 6472 2260 105 0 3 chrY 469492 469788 -24243291 + AluSx SINE Alu 1 295 -17 1723 280 70 51 chrY 469962 470917 -24242162 + L1MC2 LINE L1 69 986 -5578 2055 140 24 3 chrY 470917 471253 -24241826 + MER61A LTR ERV1 1 343 0 1723 280 70 51 chrY 471253 472064 -24241015 + L1MC2 LINE L1 986 1781 -4783 1197 245 89 61 chrY 472071 472832 -24240247 + L1MC2 LINE L1 4222 4977 -1587 506 290 94 27 chrY 472883 473211 -24239868 - LTR43 LTR ERV1 -66 536 187 1274 248 55 30 chrY 473565 474094 -24238985 + L1MC2 LINE L1 4975 5516 -1048 1978 234 27 12 chrY 474097 474576 -24238503 + L1MC2 LINE L1 6275 6760 -2 838 216 16 0 chrY 474577 474767 -24238312 + L1MC3 LINE L1 5823 6015 -1770 342 235 79 36 chrY 474792 475048 -24238031 - L1ME LINE L1 -391 5773 5403 550 260 65 62 chrY 475182 475264 -24237815 - L1ME LINE L1 -875 5271 5191 186 43 0 0 chrY 475264 475287 -24237792 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 2024 95 26 4 chrY 475289 475562 -24237517 - AluSx SINE Alu -31 281 3 550 260 65 62 chrY 475562 475876 -24237203 - L1ME LINE L1 -955 5191 4871 606 182 31 3 chrY 475932 476086 -24236993 - L1ME LINE L1 -2027 4119 3959 947 143 25 5 chrY 476086 476282 -24236797 + L1MA7 LINE L1 6092 6291 0 210 310 60 20 chrY 476493 476593 -24236486 - MIR SINE MIR -7 255 152 449 299 9 0 chrY 476595 476702 -24236377 + L2 LINE L2 3164 3271 -1 1670 176 71 31 chrY 476748 477072 -24236007 + MER1B DNA MER1_type 1 337 0 255 413 7 7 chrY 477405 477548 -24235531 + MER5B DNA MER1_type 3 145 -33 684 321 69 17 chrY 477580 477926 -24235153 + LTR16A LTR ERVL 46 409 -41 541 291 39 43 chrY 477952 478206 -24234873 + L1MDa LINE L1 17 269 -6271 491 272 0 6 chrY 478430 478610 -24234469 + L1MDa LINE L1 2746 2924 -3616 558 191 21 7 chrY 478615 478756 -24234323 + L1MB8 LINE L1 6017 6159 -19 1534 106 74 0 chrY 478770 479026 -24234053 - L1MA2 LINE L1 0 6304 6030 215 263 162 20 chrY 479129 479228 -24233851 + L2 LINE L2 3189 3301 -12 230 271 24 24 chrY 479490 479575 -24233504 + MLT1L LTR MaLR 1 85 -530 1692 193 21 47 chrY 479646 480071 -24233008 - MLT2D LTR ERVL 0 414 1 21242 224 32 26 chrY 480071 480521 -24232558 - ERVL-D LTR ERVL -7 5757 5311 1023 211 225 0 chrY 480521 480819 -24232260 + MER47A DNA MER2_type 1 365 -1 21242 224 32 26 chrY 480819 483815 -24229264 - ERVL-D LTR ERVL -453 5311 2333 2609 36 10 0 chrY 483815 484123 -24228956 - AluY SINE Alu 0 311 1 21242 224 32 26 chrY 484123 484167 -24228912 - ERVL-D LTR ERVL -3431 2333 2291 1946 116 75 36 chrY 484167 484528 -24228551 + THE1C LTR MaLR 1 375 0 21242 224 32 26 chrY 484528 486656 -24226423 - ERVL-D LTR ERVL -3473 2291 3 288 123 0 92 chrY 486658 486723 -24226356 - ERVL-D LTR ERVL 0 520 462 209 125 0 42 chrY 486734 486782 -24226297 + (TCTA)n Simple_repeat Simple_repeat 1 46 0 437 192 83 67 chrY 486785 486905 -24226174 - MLT2D LTR ERVL -48 366 245 395 259 9 9 chrY 486907 487019 -24226060 + L1M4 LINE L1 4849 4960 -1186 2126 126 3 7 chrY 487025 487334 -24225745 + AluSx SINE Alu 1 308 -4 620 220 163 63 chrY 487342 487674 -24225405 + LTR49-int LTR ERV1 1534 2112 -3834 1154 288 19 6 chrY 487753 488072 -24225007 + LTR49-int LTR ERV1 1908 2230 -4101 447 137 5 257 chrY 488286 488385 -24224694 - MER54A LTR ERVL -491 153 103 1177 65 7 0 chrY 488385 488540 -24224539 - L1MA1 LINE L1 -4 6298 6143 447 137 5 257 chrY 488540 488623 -24224456 - MER54A LTR ERVL -541 103 1 368 232 58 53 chrY 488742 488932 -24224147 + LTR49-int LTR ERV1 1290 1480 -3456 403 266 9 18 chrY 489066 489179 -24223900 + LTR49-int LTR ERV1 3260 3371 -2960 298 288 48 14 chrY 489368 489514 -24223565 + L1PA15-16 LINE L1 3 151 -6712 3618 165 6 40 chrY 489520 490200 -24222879 + L1PB3 LINE L1 5440 6096 -58 1117 126 10 94 chrY 490200 490499 -24222580 + L1PA5 LINE L1 5929 6166 -6 379 155 0 0 chrY 490499 490570 -24222509 + L1PB3 LINE L1 6081 6151 -3 328 145 0 0 chrY 490657 490719 -24222360 + MER39B-int LTR ERV1 2826 2887 -3871 579 243 16 58 chrY 490754 490943 -24222136 + MER39B-int LTR ERV1 6002 6182 -149 941 151 76 12 chrY 491002 491174 -24221905 + MER39B LTR ERV1 3 185 -468 440 217 54 23 chrY 491179 491308 -24221771 - LTR49-int LTR ERV1 -200 6131 5999 261 102 41 20 chrY 491320 491369 -24221710 + MER39B LTR ERV1 191 240 -413 1934 238 124 25 chrY 491456 492107 -24220972 - MER50 LTR ERV1 0 734 19 1902 204 25 10 chrY 492104 492511 -24220568 + MER39 LTR ERV1 295 707 0 * 3087 162 57 18 chrY 492648 493255 -24219824 + LTR29 LTR ERV1 6 653 0 1710 138 11 45 chrY 493891 494238 -24218841 - MER61B LTR ERV1 0 425 1 21 0 0 0 chrY 494295 494316 -24218763 + AT_rich Low_complexity Low_complexity 1 21 0 1824 171 73 14 chrY 494403 494747 -24218332 - THE1B LTR MaLR 0 364 1 11389 97 15 0 chrY 494747 496304 -24216775 - THE1B-int LTR MaLR 0 1580 1 1953 126 66 55 chrY 496304 496686 -24216393 - THE1B LTR MaLR 0 375 1 381 261 85 23 chrY 496754 496884 -24216195 + LTR48 LTR ERV1 1 138 -649 813 206 0 0 chrY 496895 497041 -24216038 - AluJb SINE Alu -18 294 149 2147 136 48 20 chrY 497041 497395 -24215684 - THE1B LTR MaLR 0 364 1 4504 133 17 4 chrY 497402 498095 -24214984 - MER4E LTR ERV1 0 779 78 552 237 17 0 chrY 498095 498213 -24214866 - AluJb SINE Alu -190 122 3 891 261 112 24 chrY 498225 498596 -24214483 + LTR29 LTR ERV1 152 556 -66 2377 220 53 70 chrY 498596 499124 -24213955 + LTR8A LTR ERV1 1 514 -213 2733 213 31 83 chrY 499124 499898 -24213181 - MER50 LTR ERV1 0 734 1 2377 220 53 70 chrY 499898 500109 -24212970 + LTR8A LTR ERV1 514 727 0 341 208 13 13 chrY 500109 500185 -24212894 + LTR49 LTR ERV1 520 595 0 1082 205 82 88 chrY 500186 500594 -24212485 - LTR48 LTR ERV1 -69 718 205 2308 71 0 0 chrY 500594 500877 -24212202 - AluY SINE Alu -2 309 27 1082 205 82 88 chrY 500877 501077 -24212002 - LTR48 LTR ERV1 -582 205 5 323 169 0 26 chrY 501314 501391 -24211688 + (TATG)n Simple_repeat Simple_repeat 2 76 0 191 244 217 78 chrY 501717 501832 -24211247 + MER5A DNA MER1_type 37 167 -22 1133 223 18 0 chrY 502311 502535 -24210544 - MER101B LTR ERV1 -341 229 2 30 69 0 0 chrY 502695 502753 -24210326 + AT_rich Low_complexity Low_complexity 1 58 0 1389 179 33 3 chrY 503558 503860 -24209219 - L1MA6 LINE L1 0 6300 5990 349 277 54 92 chrY 503932 504116 -24208963 + MER5B DNA MER1_type 2 178 0 26 30 0 0 chrY 504127 504160 -24208919 + AT_rich Low_complexity Low_complexity 1 33 0 22 94 0 0 chrY 504491 504555 -24208524 + AT_rich Low_complexity Low_complexity 1 64 0 2225 169 3 0 chrY 504627 505011 -24208068 - L1PB3 LINE L1 -3 6151 5767 5232 239 31 22 chrY 505011 507693 -24205386 - L1PBa LINE L1 -4208 2655 877 2195 114 74 0 chrY 507693 508044 -24205035 + MER51B LTR ERV1 1 377 0 5232 239 31 22 chrY 508044 508925 -24204154 - L1PBa LINE L1 -5986 877 5 503 224 10 0 chrY 509133 509231 -24203848 + FLAM_A SINE Alu 10 108 -34 234 363 0 22 chrY 510260 510351 -24202728 - L1MEd LINE L1 -5595 524 436 2013 151 0 3 chrY 510379 510677 -24202402 - AluJb SINE Alu -15 297 1 353 248 8 101 chrY 510764 510893 -24202186 - LTR4-int LTR ERV1 -2130 2061 1945 38693 133 19 13 chrY 510908 516853 -24196226 - LTR4-int LTR ERV1 -696 7730 1754 765 120 0 0 chrY 516853 516961 -24196118 - LTR4-int LTR ERV1 -6565 1861 1754 * 11333 128 32 39 chrY 516936 518844 -24194235 - LTR4-int LTR ERV1 -6531 1895 2 972 160 151 21 chrY 518844 519082 -24193997 - LTR4 LTR ERV1 0 596 328 228 238 12 71 chrY 519179 519263 -24193816 - LTR4 LTR ERV1 -239 357 279 2645 150 15 2 chrY 519364 519818 -24193261 + L1PA15 LINE L1 5705 6164 -1 241 391 23 0 chrY 519981 520068 -24193011 + MER91A DNA MER1_type 2 90 -106 238 200 43 0 chrY 520307 520377 -24192702 + (TA)n Simple_repeat Simple_repeat 2 74 0 309 319 62 12 chrY 521209 521369 -24191710 + L1M4 LINE L1 3605 3772 -2374 1712 218 128 26 chrY 521370 521954 -24191125 + LTR48B LTR ERV1 1 644 0 1981 132 13 26 chrY 522266 522576 -24190503 - AluSx SINE Alu -4 308 3 2021 147 0 0 chrY 522739 523032 -24190047 - AluSg SINE Alu -17 293 1 1193 285 49 35 chrY 523133 523196 -24189883 - L1ME2 LINE L1 -180 5984 5923 2178 109 0 3 chrY 523196 523499 -24189580 + AluY SINE Alu 3 304 -7 1193 285 49 35 chrY 523499 524031 -24189048 - L1ME2 LINE L1 -241 5923 5381 334 268 43 85 chrY 524035 524270 -24188809 - L1ME2 LINE L1 -1080 5066 4842 3049 154 4 53 chrY 524297 524940 -24188139 + MER4B LTR ERV1 1 779 0 229 306 67 67 chrY 525132 525387 -24187692 + L1ME LINE L1 458 712 -5493 21 0 0 0 chrY 525387 525408 -24187671 + AT_rich Low_complexity Low_complexity 1 21 0 1158 173 0 48 chrY 525516 525747 -24187332 + AluJo SINE Alu 86 305 -7 348 261 0 0 chrY 525758 525850 -24187229 + L1ME LINE L1 832 923 -5282 2302 261 65 16 chrY 525891 527108 -24185971 + L1ME LINE L1 2061 3301 -2914 21 36 0 0 chrY 527237 527265 -24185814 + AT_rich Low_complexity Low_complexity 1 28 0 27 0 0 0 chrY 528520 528547 -24184532 + AT_rich Low_complexity Low_complexity 1 27 0 934 111 0 0 chrY 528987 529122 -24183957 - AluSg/x SINE Alu -2 310 176 1709 122 4 4 chrY 529122 529368 -24183711 - AluSx SINE Alu -66 246 1 2564 122 41 14 chrY 529559 529976 -24183103 - MSTA LTR MaLR 0 428 1 22 0 0 0 chrY 530156 530178 -24182901 + AT_rich Low_complexity Low_complexity 1 22 0 1972 140 69 14 chrY 530986 531336 -24181743 - THE1C LTR MaLR -6 369 1 9750 114 37 36 chrY 531337 532915 -24180164 - THE1C-int LTR MaLR -1 1579 1 1948 140 83 14 chrY 532915 533266 -24179813 - THE1C LTR MaLR 0 375 1 835 379 27 15 chrY 533335 533741 -24179338 - L2 LINE L2 -2896 418 8 2087 164 65 12 chrY 534063 534466 -24178613 + MSTB LTR MaLR 3 426 0 7615 192 32 53 chrY 534473 534652 -24178427 + MSTB-int LTR MaLR 8 189 -1462 1320 156 141 15 chrY 534652 534921 -24178158 + AluSq SINE Alu 1 303 0 7615 192 32 53 chrY 534921 536096 -24176983 + MSTB-int LTR MaLR 189 1323 -328 2348 93 0 0 chrY 536096 536396 -24176683 + AluSg SINE Alu 1 300 -10 7615 192 32 53 chrY 536396 536713 -24176366 + MSTB-int LTR MaLR 1323 1645 -6 1637 198 119 22 chrY 536719 537088 -24175991 + MSTB LTR MaLR 1 405 -21 2684 105 6 0 chrY 538448 538810 -24174269 + THE1B LTR MaLR 1 364 0 441 0 0 0 chrY 538902 538951 -24174128 + (TAGA)n Simple_repeat Simple_repeat 2 50 0 717 12 0 0 chrY 539208 539290 -24173789 + (TTCTC)n Simple_repeat Simple_repeat 3 84 0 1250 144 0 20 chrY 539290 539485 -24173594 - AluSg/x SINE Alu -31 281 91 584 194 194 51 chrY 539486 539682 -24173397 - MER95 LTR ERV -199 232 9 341 279 99 71 chrY 539684 540078 -24173001 - L1M4 LINE L1 -1120 5026 4622 44 20 0 0 chrY 540488 540539 -24172540 + AT_rich Low_complexity Low_complexity 1 51 0 4408 189 33 6 chrY 540540 541551 -24171528 + L1 LINE L1 4335 5372 -774 3850 197 25 93 chrY 541551 542742 -24170337 + MER39B-int LTR ERV1 5074 6183 -148 3149 175 14 36 chrY 542811 543450 -24169629 + MER39B LTR ERV1 29 653 0 2650 219 96 14 chrY 543450 544250 -24168829 - L1MB7 LINE L1 -63 6121 5256 402 244 13 97 chrY 544256 544494 -24168585 - L1MB7 LINE L1 -1459 4687 4470 959 145 30 30 chrY 544592 544792 -24168287 - L1MA7 LINE L1 -3 6288 6089 187 91 23 23 chrY 545136 545180 -24167899 + (GAAAA)n Simple_repeat Simple_repeat 2 45 0 925 254 52 0 chrY 545439 545730 -24167349 + L1M4 LINE L1 2639 2944 -3202 * 2772 124 26 0 chrY 545720 546252 -24166827 - L1PA14 LINE L1 -481 5680 5139 3258 102 10 10 chrY 546252 546735 -24166344 + L1PA14 LINE L1 5671 6159 -2 4686 250 16 63 chrY 546736 546834 -24166245 + L1M4 LINE L1 2928 3029 -3117 814 211 8 86 chrY 546834 547090 -24165989 - MER46A DNA MER2_type 0 236 1 4686 250 16 63 chrY 547090 547551 -24165528 + L1M4 LINE L1 3029 3510 -2636 1917 133 74 17 chrY 547551 547903 -24165176 - THE1C LTR MaLR 0 375 4 4686 250 16 63 chrY 547903 549178 -24163901 + L1M4 LINE L1 3510 4677 -1469 23 54 0 0 chrY 550158 550195 -24162884 + AT_rich Low_complexity Low_complexity 1 37 0 9526 69 1 0 chrY 550198 551447 -24161632 - L1P LINE L1 -3679 2467 1218 7151 54 1 0 chrY 551447 553036 -24160043 + L1PA5 LINE L1 4566 6154 0 604 259 92 6 chrY 553741 553915 -24159164 + MIR SINE MIR 72 260 -2 27 29 0 0 chrY 554092 554126 -24158953 + AT_rich Low_complexity Low_complexity 1 34 0 387 0 0 0 chrY 554423 554466 -24158613 + (TG)n Simple_repeat Simple_repeat 1 43 0 225 230 90 70 chrY 554618 554718 -24158361 + MLT1I LTR MaLR 308 409 0 199 188 0 50 chrY 556059 556139 -24156940 + GA-rich Low_complexity Low_complexity 2 77 0 1198 74 0 0 chrY 556168 556317 -24156762 - AluY SINE Alu -9 302 154 28 71 0 0 chrY 557052 557108 -24155971 + AT_rich Low_complexity Low_complexity 1 56 0 481 308 85 28 chrY 557952 558199 -24154880 - MIR SINE MIR -1 261 1 12161 179 43 18 chrY 558280 559981 -24153098 - L1PB1 LINE L1 0 6867 5211 536 0 0 15 chrY 559981 560046 -24153033 + (TTTTA)n Simple_repeat Simple_repeat 4 67 0 12161 179 43 18 chrY 560046 561830 -24151249 - L1PB1 LINE L1 -1656 5211 3474 1650 113 4 4 chrY 561830 562061 -24151018 - AluSx SINE Alu -81 231 1 12161 179 43 18 chrY 562061 565107 -24147972 - L1PB1 LINE L1 -3393 3474 1 1699 181 0 7 chrY 566435 566722 -24146357 + AluJb SINE Alu 1 285 -27 23 0 0 0 chrY 566722 566745 -24146334 + AT_rich Low_complexity Low_complexity 1 23 0 2750 281 81 48 chrY 567655 569239 -24143840 + HAL1 LINE L1 1 1637 -870 22 0 0 0 chrY 572879 572901 -24140178 + AT_rich Low_complexity Low_complexity 1 22 0 6991 175 75 37 chrY 572908 574299 -24138780 + L1PA16 LINE L1 16 1458 -6107 6708 47 1 6 chrY 574300 575133 -24137946 - L1PA5 LINE L1 0 6154 5326 4556 60 0 5 chrY 575129 575732 -24137347 + L1PA5 LINE L1 4718 5317 -829 * 6587 150 25 8 chrY 575728 578134 -24134945 + L1PA16 LINE L1 1444 3927 -3638 1972 156 72 29 chrY 578138 578672 -24134407 + MLT2A2 LTR ERVL 1 554 0 5600 187 19 141 chrY 578675 580196 -24132883 + L1PA16 LINE L1 3930 5149 -2416 228 86 0 0 chrY 580196 580231 -24132848 + (TAAAA)n Simple_repeat Simple_repeat 1 35 0 5600 187 19 141 chrY 580231 580710 -24132369 + L1PA16 LINE L1 5149 5685 -1880 928 152 0 0 chrY 580707 580865 -24132214 + L1 LINE L1 3650 3807 -2339 * 4902 178 38 46 chrY 580891 582114 -24130965 + L1PA16 LINE L1 5704 6893 -692 2333 74 3 6 chrY 582114 582425 -24130654 - AluY SINE Alu -1 310 1 4902 178 38 46 chrY 582425 583105 -24129974 + L1PA16 LINE L1 6893 7577 -8 982 237 60 82 chrY 583118 583813 -24129266 + L1M4 LINE L1 2977 3656 -3909 * 2005 169 52 54 chrY 583810 584151 -24128928 + L1MA7 LINE L1 5765 6106 -185 1709 154 82 113 chrY 584151 584592 -24128487 + MSTA LTR MaLR 2 428 0 2005 169 52 54 chrY 584592 584766 -24128313 + L1MA7 LINE L1 6106 6279 -12 783 295 61 40 chrY 584807 585098 -24127981 + HAL1 LINE L1 2020 2326 -181 1866 197 45 33 chrY 585098 585519 -24127560 + MSTB LTR MaLR 1 426 0 783 295 61 40 chrY 585519 585705 -24127374 + HAL1 LINE L1 2326 2507 0 2277 159 16 60 chrY 586772 587219 -24125860 + MSTB1 LTR MaLR 1 427 -5 22 35 0 0 chrY 587923 587952 -24125127 + AT_rich Low_complexity Low_complexity 1 29 0 237 316 20 20 chrY 588321 588419 -24124660 + MER5B DNA MER1_type 1 98 -80 8452 216 81 30 chrY 588977 589326 -24123753 - L1MC2 LINE L1 -11 7747 7417 2315 85 0 10 chrY 589326 589631 -24123448 + AluSc SINE Alu 1 302 -7 8452 216 81 30 chrY 589631 591543 -24121536 - L1MC2 LINE L1 -341 7417 5403 5200 208 52 14 chrY 591646 593479 -24119600 - L1MC1 LINE L1 0 6613 4711 2516 119 6 3 chrY 593479 593840 -24119239 + THE1B LTR MaLR 1 362 -2 5200 208 52 14 chrY 593840 593953 -24119126 - L1MC1 LINE L1 -1902 4711 4604 644 302 37 0 chrY 594022 594211 -24118868 - MLT2B1 LTR ERVL -322 198 3 2232 112 0 0 chrY 594212 594507 -24118572 + AluSg SINE Alu 1 295 -15 2714 96 5 8 chrY 594523 594899 -24118180 + THE1C LTR MaLR 1 375 0 351 293 50 0 chrY 594900 595040 -24118039 + L1M4 LINE L1 4840 4986 -2579 1036 255 7 29 chrY 595053 595331 -24117748 + AluJo SINE Alu 11 282 -30 2528 238 33 6 chrY 595359 596019 -24117060 + L1M4 LINE L1 4980 5657 -1908 264 191 16 32 chrY 596081 596144 -24116935 + MLT2B1 LTR ERVL 298 359 -161 3207 216 76 26 chrY 596152 598157 -24114922 - L1MC1 LINE L1 -2751 3675 1479 871 150 50 0 chrY 598172 598332 -24114747 - L1MA3 LINE L1 -8 6297 6130 11397 183 30 9 chrY 598373 601792 -24111287 - L1MA3 LINE L1 -102 7265 3772 7904 210 24 125 chrY 601788 604331 -24108748 - L1MA3 LINE L1 -4564 2645 1 * 1676 250 71 63 chrY 605575 606479 -24106600 - L1M4 LINE L1 -1171 4975 4065 1246 281 79 41 chrY 606698 606868 -24106211 - L1M4c LINE L1 -4539 2418 2256 186 103 0 0 chrY 606868 606897 -24106182 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1246 281 79 41 chrY 606897 607683 -24105396 - L1M4c LINE L1 -4701 2256 1356 286 232 61 0 chrY 607694 607776 -24105303 + L1M4b LINE L1 1330 1416 -5443 290 302 0 0 chrY 607795 607891 -24105188 - L1M4c LINE L1 -5555 1304 1209 285 146 0 0 chrY 608014 608062 -24105017 + (TG)n Simple_repeat Simple_repeat 1 48 0 896 333 38 10 chrY 608419 608812 -24104267 - L1M4c LINE L1 -5922 937 534 655 133 0 0 chrY 609083 609188 -24103891 - L1PA8A LINE L1 -29 6102 5998 23 0 0 0 chrY 609600 609623 -24103456 + AT_rich Low_complexity Low_complexity 1 23 0 2002 132 3 3 chrY 610600 610888 -24102191 - AluSx SINE Alu -22 290 3 30656 110 13 63 chrY 610983 617495 -24095584 + L1PA7 LINE L1 1 6468 -1 230 286 0 65 chrY 618187 618264 -24094815 + MER5B DNA MER1_type 4 75 -103 233 0 0 59 chrY 618407 618441 -24094638 + (TTTTTG)n Simple_repeat Simple_repeat 1 32 0 247 366 0 20 chrY 618531 618632 -24094447 + MLT1K LTR MaLR 166 264 -324 392 339 0 0 chrY 618771 618898 -24094181 + MLT1K LTR MaLR 354 480 -108 333 234 102 55 chrY 620418 620674 -24092405 - L1MC5 LINE L1 -158 7803 7536 1524 246 20 9 chrY 621301 621646 -24091433 + MLT1A1 LTR MaLR 14 362 -3 374 343 116 5 chrY 622883 623081 -24089998 - MIR SINE MIR -6 256 37 23 0 0 0 chrY 624090 624113 -24088966 + AT_rich Low_complexity Low_complexity 1 23 0 281 259 0 24 chrY 624281 624366 -24088713 + L2 LINE L2 2152 2234 -1080 199 365 47 0 chrY 624608 624693 -24088386 + L2 LINE L2 2723 2811 -503 24 32 0 0 chrY 624921 624952 -24088127 + AT_rich Low_complexity Low_complexity 1 31 0 280 277 32 43 chrY 624964 625058 -24088021 - MLT1H1 LTR MaLR -82 473 381 10770 219 51 41 chrY 625150 626300 -24086779 - L1PA16 LINE L1 -1 7603 6466 1479 188 61 4 chrY 626300 626577 -24086502 + AluJb SINE Alu 2 294 -18 10770 219 51 41 chrY 626577 627670 -24085409 - L1PA16 LINE L1 -1138 6466 5385 1247 77 0 0 chrY 627670 627826 -24085253 + AluSg SINE Alu 1 156 -154 10770 219 51 41 chrY 627826 630771 -24082308 - L1PA16 LINE L1 -2219 5385 2199 348 283 0 10 chrY 631023 631122 -24081957 - L1PA16 LINE L1 -5399 2182 2085 873 345 36 46 chrY 631237 631845 -24081234 - L1PA16 LINE L1 -6185 1389 788 13729 155 26 11 chrY 631857 632057 -24081022 - Tigger1 DNA MER2_type 0 2418 2223 1600 189 14 7 chrY 632057 632343 -24080736 + AluJo SINE Alu 1 288 -24 219 36 0 0 chrY 632347 632375 -24080704 + (CAA)n Simple_repeat Simple_repeat 2 29 0 13729 155 26 11 chrY 632375 634544 -24078535 - Tigger1 DNA MER2_type -197 2221 8 211 279 36 117 chrY 635017 635128 -24077951 - MIR SINE MIR -98 164 63 222 118 0 0 chrY 636475 636509 -24076570 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 1801 171 10 7 chrY 636620 636930 -24076149 + AluJb SINE Alu 1 311 -1 459 309 23 11 chrY 637042 637217 -24075862 + CT-rich Low_complexity Low_complexity 3 179 0 279 0 0 0 chrY 637286 637317 -24075762 + (TG)n Simple_repeat Simple_repeat 2 32 0 391 108 0 0 chrY 637503 637568 -24075511 + L1PA13 LINE L1 6096 6160 -3 543 250 119 6 chrY 637789 637949 -24075130 - MIR SINE MIR -49 213 36 21 0 0 0 chrY 638679 638700 -24074379 + AT_rich Low_complexity Low_complexity 1 21 0 237 339 18 46 chrY 638709 638818 -24074261 - MER5A DNA MER1_type -72 117 12 748 277 68 4 chrY 639090 639325 -24073754 + MIR SINE MIR 12 261 -1 216 111 0 0 chrY 639339 639375 -24073704 + (CAT)n Simple_repeat Simple_repeat 1 36 0 36 70 0 0 chrY 639508 639579 -24073500 + AT_rich Low_complexity Low_complexity 1 71 0 2309 68 0 10 chrY 639721 640017 -24073062 + AluY SINE Alu 2 294 -17 696 324 44 35 chrY 640119 640662 -24072417 - L1ME3 LINE L1 -280 5882 5335 1454 180 3 42 chrY 640829 641118 -24071961 - AluJo SINE Alu -21 291 14 3234 147 7 47 chrY 641550 642143 -24070936 + LTR24B LTR ERV1 1 569 -7 1246 237 76 57 chrY 642143 642737 -24070342 + LTR24B-int LTR ERV1 1 745 -4378 350 213 13 13 chrY 643481 643556 -24069523 + LTR24B-int LTR ERV1 1121 1195 -5136 312 274 14 0 chrY 643567 643640 -24069439 + tRNA-Glu-GAG tRNA tRNA 2 75 0 406 216 0 20 chrY 643640 643742 -24069337 + LTR24B-int LTR ERV1 1283 1382 -4949 848 191 39 22 chrY 643866 644044 -24069035 + LTR24B-int LTR ERV1 1372 1552 -4779 360 227 34 59 chrY 644152 644271 -24068808 + LTR24B-int LTR ERV1 873 988 -4135 369 250 0 0 chrY 644271 644347 -24068732 + MER34C LTR ERV1 155 230 -355 4432 192 77 80 chrY 644363 645303 -24067776 + LTR24B-int LTR ERV1 1093 2034 -4208 1365 237 0 33 chrY 645303 645607 -24067472 + AluJo SINE Alu 1 294 -8 4432 192 77 80 chrY 645607 647119 -24065960 + LTR24B-int LTR ERV1 2034 4848 -1394 2516 197 40 19 chrY 647119 648094 -24064985 + LTR24B-int LTR ERV1 4425 4999 -124 2282 97 3 0 chrY 648106 648406 -24064673 - AluSp SINE Alu -11 302 2 5930 109 32 12 chrY 648411 650072 -24063007 - L1PA13 LINE L1 0 6163 4489 511 182 16 8 chrY 650073 650194 -24062885 + L1PA13 LINE L1 4362 4483 -1663 2667 164 51 9 chrY 650284 650833 -24062246 + LTR24B LTR ERV1 1 572 -4 259 259 79 65 chrY 651382 651672 -24061407 + HAL1 LINE L1 947 1240 -1267 297 109 0 22 chrY 651693 651739 -24061340 + MER11B LTR ERVK 1191 1235 -1 2931 80 18 0 chrY 651739 652140 -24060939 + L1PA8 LINE L1 5762 6169 -3 588 112 5 4 chrY 652150 652268 -24060811 - L1MC/D LINE L1 -406 5760 5664 1886 137 7 17 chrY 652381 652681 -24060398 + AluSx SINE Alu 3 299 -13 442 342 46 29 chrY 652717 652957 -24060122 + L2 LINE L2 1717 1960 -1354 737 160 0 40 chrY 654117 654274 -24058805 - AluJb SINE Alu 0 316 165 2523 199 19 29 chrY 654460 655082 -24057997 - L1MC1 LINE L1 0 6613 5998 727 155 69 6 chrY 655100 655274 -24057805 - L1MA9 LINE L1 0 6312 6128 5365 192 31 2 chrY 655274 656404 -24056675 - L1 LINE L1 -1793 5313 4151 2111 256 72 33 chrY 656407 657134 -24055945 - L1 LINE L1 -6274 756 2 6171 230 27 84 chrY 657153 657217 -24055862 - L1MC1 LINE L1 -603 6010 5944 315 0 0 0 chrY 657217 657252 -24055827 + (TG)n Simple_repeat Simple_repeat 2 36 0 6171 230 27 84 chrY 657252 658617 -24054462 - L1MC1 LINE L1 -669 5944 4502 1622 190 80 86 chrY 658617 659207 -24053872 + LTR60 LTR ERV1 1 586 0 6171 230 27 84 chrY 659207 660913 -24052166 - L1MC1 LINE L1 -2111 4502 2699 2358 93 0 10 chrY 660913 661226 -24051853 - AluSg SINE Alu 0 310 1 6171 230 27 84 chrY 661226 661321 -24051758 - L1MC1 LINE L1 -3914 2699 2992 1638 174 31 10 chrY 661321 661609 -24051470 + AluJb SINE Alu 18 311 -1 6171 230 27 84 chrY 661609 661853 -24051226 - L1MC1 LINE L1 -3620 2993 2737 4976 224 36 30 chrY 661859 663124 -24049955 - L1MC1 LINE L1 -5108 1318 46 2025 107 3 7 chrY 663889 664187 -24048892 - AluSx SINE Alu -15 297 1 21 0 0 0 chrY 664808 664829 -24048250 + AT_rich Low_complexity Low_complexity 1 21 0 662 287 101 13 chrY 665039 665276 -24047803 - MIR SINE MIR 0 262 5 22 0 0 0 chrY 665923 665945 -24047134 + AT_rich Low_complexity Low_complexity 1 22 0 328 89 0 0 chrY 666357 666402 -24046677 - Alu SINE Alu -257 45 1 2106 70 0 22 chrY 666535 666808 -24046271 + AluY SINE Alu 37 303 -8 254 310 0 10 chrY 666809 666909 -24046170 - L1MCb LINE L1 -1973 4453 4355 25 0 0 0 chrY 666994 667019 -24046060 + AT_rich Low_complexity Low_complexity 1 25 0 616 292 88 86 chrY 667124 667435 -24045644 - L1M4 LINE L1 -2370 3776 3467 1369 218 14 0 chrY 667435 667715 -24045364 - AluJb SINE Alu -28 284 1 616 292 88 86 chrY 667715 668400 -24044679 - L1M4 LINE L1 -2679 3467 2778 418 330 52 73 chrY 668446 668831 -24044248 - L1MEd LINE L1 -5643 476 100 250 232 91 40 chrY 669509 669608 -24043471 - MLT1I LTR MaLR -2 407 304 2481 211 39 7 chrY 670182 670752 -24042327 + L1MB3 LINE L1 5586 6173 -10 10289 188 34 4 chrY 670796 672480 -24040599 - L1PB1 LINE L1 -1 6866 5233 234 0 0 0 chrY 672480 672506 -24040573 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 10289 188 34 4 chrY 672506 674100 -24038979 - L1PB1 LINE L1 -1634 5233 3500 251 229 41 8 chrY 674111 674233 -24038846 + (TA)n Simple_repeat Simple_repeat 2 127 0 6038 116 39 6 chrY 674233 675222 -24037857 - L1PB1 LINE L1 -4458 2405 1384 461 177 50 116 chrY 675222 675403 -24037676 - MER4B-int LTR ERV1 -3751 2195 2027 198 103 0 0 chrY 675446 675475 -24037604 + (CA)n Simple_repeat Simple_repeat 2 30 0 3285 194 12 5 chrY 675508 676285 -24036794 - MER4B-int LTR ERV1 -5698 1060 225 1660 135 51 11 chrY 676308 676385 -24036694 - MER4B-int LTR ERV1 -6473 285 213 182 31 0 62 chrY 676385 676417 -24036662 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 1660 135 51 11 chrY 676417 676613 -24036466 - MER4B-int LTR ERV1 -6545 213 1 3258 152 6 11 chrY 676613 677227 -24035852 - MER4B LTR ERV1 0 779 3 838 250 44 0 chrY 677229 677457 -24035622 - L1MCb LINE L1 -2311 4115 3878 * 1431 209 55 13 chrY 677455 678158 -24034921 - L1MCb LINE L1 -3953 2473 1702 1758 150 3 46 chrY 678162 678523 -24034556 - MER4A LTR ERV1 0 664 261 236 111 22 22 chrY 678523 678568 -24034511 - MER4A LTR ERV1 -566 98 54 2026 220 49 52 chrY 678599 678675 -24034404 - L1MCb LINE L1 -4821 1605 1530 2510 69 0 0 chrY 678675 678980 -24034099 - AluY SINE Alu -6 305 1 2026 220 49 52 chrY 678980 679924 -24033155 - L1MCb LINE L1 -4896 1530 609 408 225 40 2 chrY 679962 680075 -24033004 - LTR9B LTR ERV1 0 644 557 255 283 0 0 chrY 680199 680259 -24032820 + LTR4 LTR ERV1 298 357 -239 1225 170 7 92 chrY 680345 680651 -24032428 + LTR4 LTR ERV1 317 596 0 2072 242 59 8 chrY 680651 681176 -24031903 - LTR9B LTR ERV1 -86 558 7 1437 167 7 11 chrY 681182 681447 -24031632 - HUERS-P3 LTR ERV1 0 8919 6828 811 154 18 6 chrY 681772 681941 -24031138 - HUERS-P3 LTR ERV1 -2453 2562 2392 515 200 16 24 chrY 681942 682067 -24031012 - HUERS-P3 LTR ERV1 -1934 6985 6862 3441 204 13 5 chrY 682078 682712 -24030367 - HUERS-P3 LTR ERV1 -2007 6912 6274 1418 173 68 0 chrY 682704 682953 -24030126 - HUERS-P3 LTR ERV1 -3753 5166 4901 * 736 167 91 0 chrY 682954 683086 -24029993 - HUERS-P3 LTR ERV1 -4237 4682 4539 * 9203 163 14 2 chrY 683079 684555 -24028524 - HUERS-P3 LTR ERV1 -5635 3284 1791 4948 173 30 12 chrY 684552 685437 -24027642 - HUERS-P3 LTR ERV1 -7267 1652 752 * 2825 205 34 19 chrY 685482 686107 -24026972 - HUERS-P3 LTR ERV1 -8285 634 1 2740 208 59 8 chrY 686107 686714 -24026365 - LTR9B LTR ERV1 0 644 7 2657 222 11 81 chrY 686716 687184 -24025895 - L1MCa LINE L1 -5342 754 389 2039 61 0 0 chrY 687184 687488 -24025591 + AluY SINE Alu 34 337 0 2657 222 11 81 chrY 687488 687826 -24025253 - L1MCa LINE L1 -5707 389 29 23 0 0 0 chrY 687830 687853 -24025226 + AT_rich Low_complexity Low_complexity 1 23 0 314 204 97 11 chrY 687956 688049 -24025030 - L1MD1 LINE L1 -39 6203 6103 530 275 26 0 chrY 688067 688260 -24024819 - L1MDa LINE L1 -2934 3472 3275 476 301 25 0 chrY 688259 688422 -24024657 - L1MDa LINE L1 -4168 2238 2072 * 1555 260 57 67 chrY 688435 689223 -24023856 - L1MDa LINE L1 -4390 2016 1237 259 29 0 0 chrY 689256 689291 -24023788 - L1MA7 LINE L1 -21 6270 6236 1172 156 23 8 chrY 689294 689594 -24023485 + L1M2 LINE L1 5180 5482 -743 2281 257 67 123 chrY 689652 690825 -24022254 - L1MDa LINE L1 -5274 1135 28 3085 199 79 47 chrY 690830 691319 -24021760 - L1MC3 LINE L1 -16 7769 7238 3244 175 30 57 chrY 691319 692126 -24020953 + LTR1 LTR ERV1 1 785 0 3085 199 79 47 chrY 692126 692513 -24020566 - L1MC3 LINE L1 -547 7238 6865 3256 262 58 7 chrY 692531 692909 -24020170 - L1M4 LINE L1 -1164 4982 4625 1889 141 133 16 chrY 692909 693292 -24019787 + MSTA LTR MaLR 1 428 0 3256 262 58 7 chrY 693292 694011 -24019068 - L1M4 LINE L1 -1521 4625 3829 1494 211 5 83 chrY 694057 694478 -24018601 + MLT1B LTR MaLR 1 388 -2 545 224 86 82 chrY 694479 694783 -24018296 - L1MCa LINE L1 -5026 1400 1096 1181 217 102 110 chrY 695079 695489 -24017590 + MSTD-int LTR MaLR 1237 1643 -92 2547 273 57 62 chrY 695490 697305 -24015774 + L1MB7 LINE L1 2564 4368 -1778 2303 225 73 2 chrY 697320 698133 -24014946 + L1MB7 LINE L1 4951 5827 -357 32 75 0 0 chrY 698484 698551 -24014528 + AT_rich Low_complexity Low_complexity 1 67 0 27 73 0 0 chrY 698632 698687 -24014392 + AT_rich Low_complexity Low_complexity 1 55 0 184 280 96 88 chrY 699136 699261 -24013818 - MIR SINE MIR -19 243 118 2171 209 35 7 chrY 699273 699704 -24013375 + Tigger5 DNA MER2_type 10 452 -1871 395 190 25 0 chrY 699715 699794 -24013285 + Tigger5 DNA MER2_type 2243 2323 0 22 35 0 0 chrY 699894 699923 -24013156 + AT_rich Low_complexity Low_complexity 1 29 0 881 227 100 0 chrY 700394 700685 -24012394 + MER33 DNA MER1_type 1 320 -4 7086 235 13 10 chrY 701651 703166 -24009913 + ERVL LTR ERVL 417 1936 -3828 799 224 87 42 chrY 703168 703498 -24009581 + MSTD LTR MaLR 1 394 -2 629 73 0 109 chrY 703538 703648 -24009431 + L1MA3 LINE L1 6198 6295 -10 360 336 0 0 chrY 703662 703784 -24009295 + MSTD-int LTR MaLR 44 165 -1570 1943 137 77 14 chrY 703784 704135 -24008944 - THE1C LTR MaLR 0 375 3 399 133 0 13 chrY 704137 704212 -24008867 - THE1C-int LTR MaLR 0 1580 1507 1360 262 100 17 chrY 704219 704639 -24008440 + MLT2B1 LTR ERVL 1 455 -65 225 0 0 0 chrY 704639 704664 -24008415 + (TC)n Simple_repeat Simple_repeat 1 25 0 13908 181 22 9 chrY 704668 708751 -24004328 + L1MA1 LINE L1 2158 6296 -6 486 267 121 45 chrY 708741 709009 -24004070 + L1MC4 LINE L1 6351 6650 -1392 * 279 0 0 0 chrY 709009 709040 -24004039 + (CA)n Simple_repeat Simple_repeat 2 32 0 486 267 121 45 chrY 709040 709101 -24003978 + L1MC4 LINE L1 6650 6705 -1337 258 32 0 0 chrY 709264 709295 -24003784 + (TCTCC)n Simple_repeat Simple_repeat 5 35 0 472 287 37 0 chrY 709316 709452 -24003627 - MLT1E2 LTR MaLR -320 306 166 461 159 0 0 chrY 709463 709532 -24003547 + AluSg/x SINE Alu 218 286 -23 228 297 34 46 chrY 709568 709743 -24003336 + L1ME LINE L1 5618 5790 -331 1113 300 47 16 chrY 709754 710248 -24002831 - L1MCb LINE L1 -5104 941 433 1036 278 35 56 chrY 710236 710655 -24002424 - L1M4 LINE L1 -1931 4215 3789 * 2226 82 0 0 chrY 710655 710983 -24002096 - AluY SINE Alu 0 328 1 1036 278 35 56 chrY 710983 711122 -24001957 - L1M4 LINE L1 -2357 3789 3668 245 29 29 0 chrY 711122 711156 -24001923 + (TCTA)n Simple_repeat Simple_repeat 2 36 0 1036 278 35 56 chrY 711156 711217 -24001862 - L1M4 LINE L1 -2478 3668 3607 2651 159 2 47 chrY 711219 711727 -24001352 - L1PA15 LINE L1 0 6165 5681 21 0 0 0 chrY 711731 711752 -24001327 + AT_rich Low_complexity Low_complexity 1 21 0 446 238 66 13 chrY 711981 712132 -24000947 - L1M4 LINE L1 -2915 3231 3073 2788 175 45 15 chrY 712148 712684 -24000395 + MER7C DNA MER2_type 2 553 -49 * 2813 190 87 0 chrY 712681 713213 -23999866 - Tigger4(Zombi) DNA MER2_type -2153 578 1 3434 193 52 75 chrY 713216 713951 -23999128 + L1MA6 LINE L1 5042 5774 -526 253 122 20 0 chrY 713951 714000 -23999079 + LTR66 LTR ERVL 389 438 -172 3434 193 52 75 chrY 714000 714515 -23998564 + L1MA6 LINE L1 5774 6299 -1 1941 149 44 16 chrY 715423 715786 -23997293 - THE1C LTR MaLR 0 375 3 9686 136 11 37 chrY 715792 717402 -23995677 - THE1C-int LTR MaLR -4 1576 8 1707 150 62 38 chrY 717402 717741 -23995338 - THE1C LTR MaLR -28 347 1 42448 32 24 2 chrY 719342 725357 -23987722 + L1HS LINE L1 2 6155 0 198 91 0 0 chrY 725359 725392 -23987687 + (A)n Simple_repeat Simple_repeat 1 33 0 246 32 0 0 chrY 726253 726284 -23986795 + (TAAAA)n Simple_repeat Simple_repeat 3 33 0 31 76 0 0 chrY 726389 726455 -23986624 + AT_rich Low_complexity Low_complexity 1 66 0 496 286 181 21 chrY 726590 726877 -23986202 + LTR16C LTR ERVL 157 489 -2 22 70 0 0 chrY 727354 727397 -23985682 + AT_rich Low_complexity Low_complexity 1 43 0 1501 237 67 5 chrY 727574 727945 -23985134 + MSTD LTR MaLR 3 396 0 4778 257 55 48 chrY 727948 728613 -23984466 + MSTD-int LTR MaLR 3 662 -1073 2364 72 0 0 chrY 728613 728934 -23984145 + AluY SINE Alu 1 321 0 4778 257 55 48 chrY 728934 729985 -23983094 + MSTD-int LTR MaLR 662 1735 0 1067 268 78 10 chrY 729985 730291 -23982788 + MSTD LTR MaLR 1 327 -69 219 209 30 0 chrY 730345 730412 -23982667 + (TA)n Simple_repeat Simple_repeat 1 69 0 23 54 0 0 chrY 730477 730514 -23982565 + AT_rich Low_complexity Low_complexity 1 37 0 183 80 0 0 chrY 730515 730540 -23982539 + (TC)n Simple_repeat Simple_repeat 1 25 0 1934 212 100 25 chrY 732092 732573 -23980506 - MLT2B1 LTR ERVL -1 519 3 7698 180 46 11 chrY 732574 734024 -23979055 - ERVL-B1 LTR ERVL -6 5758 4258 7420 218 14 23 chrY 734026 735575 -23977504 - ERVL-B1 LTR ERVL -3846 1918 385 585 173 23 20 chrY 735575 735891 -23977188 + (TA)n Simple_repeat Simple_repeat 1 317 0 1034 293 10 7 chrY 735917 736224 -23976855 - ERVL-B1 LTR ERVL -5346 308 1 1755 222 50 48 chrY 736224 736743 -23976336 - MLT2B1 LTR ERVL 0 520 1 43 64 0 0 chrY 736832 736910 -23976169 + AT_rich Low_complexity Low_complexity 1 78 0 377 302 21 57 chrY 736910 737102 -23975977 - MIR SINE MIR -6 256 72 5042 139 31 3 chrY 738005 739075 -23974004 - L1PA16 LINE L1 0 6166 5107 27 0 0 0 chrY 739203 739230 -23973849 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chrY 739459 739480 -23973599 + AT_rich Low_complexity Low_complexity 1 21 0 792 154 0 29 chrY 739858 739994 -23973085 + FLAM_C SINE Alu 2 133 0 27 49 0 0 chrY 739994 740035 -23973044 + AT_rich Low_complexity Low_complexity 1 41 0 257 127 109 0 chrY 740059 740114 -23972965 - L1MA3 LINE L1 -1 6304 6244 248 212 0 15 chrY 740726 740792 -23972287 - L1MD2 LINE L1 -3 6356 6292 * 2815 100 0 2 chrY 740790 741191 -23971888 - L1PA7 LINE L1 -1227 4919 4520 6570 65 5 40 chrY 741191 742461 -23970618 + L1PA7 LINE L1 4911 6146 -8 450 211 42 0 chrY 742461 742556 -23970523 - L1MD1 LINE L1 -59 6183 6085 1051 254 99 9 chrY 742562 743033 -23970046 - L1MD1 LINE L1 -396 5963 5442 973 241 64 19 chrY 743034 743358 -23969721 - MSTD LTR MaLR -35 361 1 505 258 37 53 chrY 743602 743792 -23969287 - L2 LINE L2 -16 3297 3111 257 278 0 0 chrY 743887 743959 -23969120 - L2 LINE L2 -1015 2299 2228 306 333 95 26 chrY 745023 745254 -23967825 - MLT1J2 LTR MaLR -145 305 59 2090 163 22 3 chrY 747089 747444 -23965635 + MER57A LTR ERV1 1 362 -41 8524 144 29 41 chrY 747444 748892 -23964187 + MER57A-int LTR ERV1 14 1444 -6093 3463 124 4 0 chrY 748889 749379 -23963700 + MER57A-int LTR ERV1 6655 7146 -391 * 660 107 90 33 chrY 749379 749501 -23963578 + LTR54B LTR ERV1 3 131 -367 1540 113 43 31 chrY 749501 749596 -23963483 + MER57A-int LTR ERV1 7279 7371 -166 186 43 0 0 chrY 749596 749619 -23963460 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1540 113 43 31 chrY 749619 749779 -23963300 + MER57A-int LTR ERV1 7371 7537 0 2238 156 10 29 chrY 749779 750190 -23962889 + MER57A LTR ERV1 1 403 0 301 230 61 47 chrY 751151 751299 -23961780 + L1MC4 LINE L1 7892 8041 -1 6960 209 33 16 chrY 751332 753802 -23959277 - L1PA16 LINE L1 -144 6022 3486 22 0 0 0 chrY 753957 753979 -23959100 + AT_rich Low_complexity Low_complexity 1 22 0 20972 163 23 6 chrY 754077 756704 -23956375 + L1MA3 LINE L1 22 2728 -4837 2284 94 10 0 chrY 756704 757002 -23956077 + AluSc SINE Alu 1 301 -8 20972 163 23 6 chrY 757002 758012 -23955067 + L1MA3 LINE L1 2728 3720 -3845 272 239 0 28 chrY 758012 758083 -23954996 + L1P LINE L1 4890 4958 -1188 1316 122 0 0 chrY 758099 758280 -23954799 + AluJb SINE Alu 117 297 -15 9485 189 24 8 chrY 758296 758801 -23954278 + L1MA3 LINE L1 4624 5119 -2605 2865 104 0 5 chrY 758801 759215 -23953864 - L1PA13 LINE L1 -4 6159 5748 9485 189 24 8 chrY 759215 759451 -23953628 + L1MA3 LINE L1 5119 5350 -2374 6089 97 7 20 chrY 759451 760391 -23952688 + L1PA13 LINE L1 5231 6158 -5 9485 189 24 8 chrY 760391 762697 -23950382 + L1MA3 LINE L1 5350 7723 -1 227 333 14 0 chrY 763165 763234 -23949845 + MIR3 SINE MIR 124 193 -15 862 259 23 5 chrY 763248 763464 -23949615 - MER58A DNA MER1_type -4 220 1 1985 236 45 2 chrY 763923 764578 -23948501 - L1MB7 LINE L1 -301 5883 5197 2096 221 25 51 chrY 764597 765108 -23947971 - LTR53 LTR ERVL -21 498 1 4110 239 35 11 chrY 765332 765920 -23947159 - HERVL74 LTR ERVL -2335 3350 2728 2254 169 88 39 chrY 765920 766280 -23946799 + LTR49 LTR ERV1 1 401 -194 1857 162 0 17 chrY 766280 766577 -23946502 - AluJo SINE Alu -12 300 9 2254 169 88 39 chrY 766577 766783 -23946296 + LTR49 LTR ERV1 401 595 0 4110 239 35 11 chrY 766783 767179 -23945900 - HERVL74 LTR ERVL -2957 2728 2343 4091 118 14 62 chrY 767182 767908 -23945171 - LTR8 LTR ERV1 0 691 1 801 201 6 17 chrY 767920 768094 -23944985 - HERVL74 LTR ERVL -3423 2262 2091 2188 192 16 91 chrY 768209 768774 -23944305 - HERVL74 LTR ERVL -1483 2102 1623 1808 250 56 109 chrY 768799 769562 -23943517 - MER21B LTR ERV1 -124 739 17 549 211 14 19 chrY 769581 769795 -23943284 - HERVL74 LTR ERVL -4061 1624 1313 3804 172 33 7 chrY 769795 770488 -23942591 + MER50 LTR ERV1 1 711 -23 689 212 34 7 chrY 770569 770715 -23942364 - HERVL74 LTR ERVL -4368 1317 1168 2485 226 26 33 chrY 770715 770931 -23942148 + L1M3 LINE L1 4896 5112 -1071 1680 133 50 36 chrY 770931 771209 -23941870 - AluSx SINE Alu -27 285 4 2485 226 26 33 chrY 771209 771901 -23941178 + L1M3 LINE L1 5112 5787 -396 236 255 0 0 chrY 772120 772171 -23940908 - MER107 DNA MER1_type -46 151 101 1844 273 30 2 chrY 773139 773644 -23939435 - LTR53 LTR ERVL 0 519 1 2266 224 132 65 chrY 773644 774612 -23938467 - L1MB7 LINE L1 -944 5202 4142 1523 169 53 27 chrY 774612 774913 -23938166 - AluJo SINE Alu -1 311 3 2266 224 132 65 chrY 774913 775103 -23937976 - L1MB7 LINE L1 -2004 4142 3966 29 70 0 0 chrY 775165 775222 -23937857 + AT_rich Low_complexity Low_complexity 1 57 0 793 243 19 63 chrY 776789 777098 -23935981 + MLT2D LTR ERVL 83 475 -40 662 110 20 0 chrY 777928 778028 -23935051 - L1PA13 LINE L1 -265 5903 5802 1759 116 0 0 chrY 778029 778287 -23934792 + L1PA13 LINE L1 5902 6159 -4 458 75 15 0 chrY 778313 778380 -23934699 + (TA)n Simple_repeat Simple_repeat 2 69 0 2207 93 0 7 chrY 778748 779038 -23934041 - AluSx SINE Alu -24 288 1 24 0 0 0 chrY 779325 779349 -23933730 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chrY 780714 780735 -23932344 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chrY 781363 781390 -23931689 + AT_rich Low_complexity Low_complexity 1 27 0 228 287 124 39 chrY 781447 781576 -23931503 - MIR SINE MIR -52 210 71 312 191 119 79 chrY 781670 781796 -23931283 + L1MC3 LINE L1 5342 5472 -861 450 0 0 0 chrY 781799 781849 -23931230 + (TAAAA)n Simple_repeat Simple_repeat 5 54 0 5572 223 80 61 chrY 781850 782319 -23930760 + L1MC3 LINE L1 5658 6117 -1668 2219 102 13 0 chrY 782319 782624 -23930455 + AluSp SINE Alu 1 309 -4 5572 223 80 61 chrY 782624 783595 -23929484 + L1MC3 LINE L1 6117 7185 -600 249 213 0 0 chrY 783595 783642 -23929437 + MLT1H LTR MaLR 85 131 -418 5572 223 80 61 chrY 783642 783915 -23929164 + L1MC3 LINE L1 7185 7451 -334 8508 205 29 34 chrY 783924 785930 -23927149 + L1 LINE L1 13 2251 -5314 2005 144 3 0 chrY 786321 786620 -23926459 + AluSx SINE Alu 1 300 -12 1611 154 15 80 chrY 787374 787711 -23925368 - MER47A DNA MER2_type 0 366 52 318 188 100 25 chrY 788496 788576 -23924503 + MIR SINE MIR 103 188 -74 661 265 87 42 chrY 789111 789607 -23923472 - L1 LINE L1 -2983 3163 2635 358 270 0 63 chrY 789674 789848 -23923231 - L1 LINE L1 -3654 2492 2330 513 169 7 81 chrY 789878 790014 -23923065 - L1MB8 LINE L1 -1 6177 6052 * 4779 257 39 11 chrY 790013 791498 -23921581 - L1MEc LINE L1 -874 5341 3815 1598 203 70 0 chrY 791499 791858 -23921221 + Tigger2 DNA MER2_type 2 385 -2333 1401 124 26 0 chrY 791856 792089 -23920990 + Tigger2 DNA MER2_type 2404 2642 -76 * 267 205 27 89 chrY 792089 792201 -23920878 + L1 LINE L1 5062 5166 -2399 301 323 0 0 chrY 792201 792266 -23920813 - Tigger2 DNA MER2_type 0 2718 2654 3625 258 68 11 chrY 792266 792285 -23920794 - L1MEc LINE L1 -2501 3714 3698 1950 23 0 0 chrY 792285 792506 -23920573 - AluY SINE Alu -17 294 74 3625 258 68 11 chrY 792506 793992 -23919087 - L1MEc LINE L1 -2517 3698 2171 358 291 14 48 chrY 794024 794234 -23918845 + L1M4 LINE L1 2514 2716 -3430 441 298 98 46 chrY 794305 794674 -23918405 - L1MEc LINE L1 -4298 2098 1711 26 30 0 0 chrY 795698 795731 -23917348 + AT_rich Low_complexity Low_complexity 1 33 0 2238 92 0 16 chrY 796682 796986 -23916093 + AluSg SINE Alu 1 299 -11 501 245 35 0 chrY 797167 797310 -23915769 - MER63 DNA MER1_type 0 1060 913 591 219 39 0 chrY 797326 797454 -23915625 + L1M4b LINE L1 10 142 -6717 267 203 0 0 chrY 797456 797520 -23915559 + (TA)n Simple_repeat Simple_repeat 1 64 0 927 244 19 23 chrY 797802 798267 -23914812 + L1M4b LINE L1 400 921 -5938 3774 193 7 3 chrY 798272 799007 -23914072 - L1 LINE L1 -1910 4236 3499 1619 177 71 18 chrY 799008 799077 -23914002 + L1 LINE L1 4243 4307 -1839 2363 91 0 0 chrY 799077 799384 -23913695 + AluSc SINE Alu 1 307 -2 1619 177 71 18 chrY 799384 799710 -23913369 + L1 LINE L1 4307 4659 -1487 1718 109 0 0 chrY 799711 799940 -23913139 + AluSq SINE Alu 1 229 -84 6958 248 38 9 chrY 800006 802080 -23910999 - L1PA15-16 LINE L1 -1144 5705 3693 2807 7 0 0 chrY 802080 802390 -23910689 - AluYa5 SINE Alu -1 310 1 6958 248 38 9 chrY 802390 803213 -23909866 - L1PA15-16 LINE L1 -3156 3693 1246 4009 107 20 3 chrY 803385 803975 -23909104 - MER4A LTR ERV1 0 600 1 318 276 54 135 chrY 804101 804493 -23908586 - L1M2 LINE L1 -5781 1068 709 936 330 40 12 chrY 805161 805561 -23907518 - L1M2 LINE L1 -6429 420 10 6904 154 34 67 chrY 805564 807019 -23906060 - Tigger2 DNA MER2_type -756 1962 557 10429 177 37 12 chrY 807020 809307 -23903772 + Ricksha DNA DNA 296 2689 -557 324 100 0 0 chrY 809307 809357 -23903722 + L1 LINE L1 4784 4833 -1313 1394 280 31 50 chrY 809480 810043 -23903036 + L1MCb LINE L1 75 628 -5417 1792 151 27 3 chrY 810043 810381 -23902698 - L1MA9 LINE L1 -2 6310 5965 1394 280 31 50 chrY 810381 810403 -23902676 + L1MCb LINE L1 628 649 -5396 982 251 81 10 chrY 810383 810884 -23902195 + L1MCb LINE L1 2285 2837 -3727 * 1876 104 0 84 chrY 810884 811234 -23901845 + AluSq SINE Alu 1 324 0 982 251 81 10 chrY 811234 811312 -23901767 + L1MCb LINE L1 2837 2908 -3656 189 0 0 0 chrY 811375 811396 -23901683 + (CCA)n Simple_repeat Simple_repeat 1 21 0 10383 250 54 15 chrY 812432 817066 -23896013 + L1MB8 LINE L1 1621 6135 -1032 876 193 28 111 chrY 817065 817194 -23895885 + L1MB8 LINE L1 6596 6734 -465 * 1867 166 0 0 chrY 817194 817495 -23895584 - AluSx SINE Alu -11 301 1 876 193 28 111 chrY 817495 817617 -23895462 + L1MB8 LINE L1 6734 6824 -375 863 102 8 0 chrY 817617 817745 -23895334 + L1MA2 LINE L1 6169 6297 -7 876 193 28 111 chrY 817745 817779 -23895300 + L1MB8 LINE L1 6824 6859 -340 21 36 0 0 chrY 817810 817838 -23895241 + AT_rich Low_complexity Low_complexity 1 28 0 180 0 0 0 chrY 817974 817994 -23895085 + (TAAAAA)n Simple_repeat Simple_repeat 2 21 0 2573 139 27 2 chrY 818307 818754 -23894325 - L1MA2 LINE L1 -8 7715 7258 8094 192 27 29 chrY 818754 819409 -23893670 - L1MA2 LINE L1 -679 7044 6389 282 27 0 9 chrY 819409 819457 -23893622 + AluY SINE Alu 261 301 0 8094 192 27 29 chrY 819457 819743 -23893336 - L1MA2 LINE L1 -1334 6389 6104 414 0 0 0 chrY 819743 819789 -23893290 + (TG)n Simple_repeat Simple_repeat 1 46 0 8094 192 27 29 chrY 819789 821036 -23892043 - L1MA2 LINE L1 -1619 6104 4814 5814 220 42 14 chrY 821041 822310 -23890769 - L1MA2 LINE L1 -6240 1325 22 2107 127 0 0 chrY 822897 823197 -23889882 - AluSx SINE Alu -12 300 1 284 274 24 0 chrY 823526 823610 -23889469 + MIR3 SINE MIR 121 206 -2 29 28 0 0 chrY 824167 824203 -23888876 + AT_rich Low_complexity Low_complexity 1 36 0 327 85 0 0 chrY 826491 826538 -23886541 + (CA)n Simple_repeat Simple_repeat 2 48 0 482 301 45 6 chrY 826698 826854 -23886225 - MIR SINE MIR -55 207 46 261 362 26 17 chrY 826915 827031 -23886048 + L2 LINE L2 3197 3313 0 3419 220 34 11 chrY 827307 828165 -23884914 - L1MC3 LINE L1 -2 7783 6906 266 0 0 29 chrY 828165 828200 -23884879 + (TTTTG)n Simple_repeat Simple_repeat 1 34 0 1176 248 4 0 chrY 828203 828469 -23884610 - AluJo SINE Alu -34 278 12 1410 246 48 73 chrY 828475 829040 -23884039 - L1MC3 LINE L1 -863 6922 6372 450 269 0 8 chrY 829055 829174 -23883905 + L1MC4a LINE L1 1702 1819 -4565 4126 267 94 20 chrY 829178 831416 -23881663 + L1MC4a LINE L1 1919 4385 -1997 252 59 0 0 chrY 831416 831450 -23881629 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 4126 267 94 20 chrY 831450 831792 -23881287 + L1MC4a LINE L1 4385 4700 -1682 727 178 16 0 chrY 831793 831922 -23881157 + FLAM_C SINE Alu 1 131 -12 814 246 33 11 chrY 831925 832197 -23880882 + L1MC4a LINE L1 4693 4970 -1412 3597 271 75 41 chrY 832199 833354 -23879725 + MSTD-int LTR MaLR 541 1735 0 1001 215 75 31 chrY 833354 833703 -23879376 + MSTD LTR MaLR 1 396 0 4797 202 34 4 chrY 833703 834664 -23878415 + ERVL-B1 LTR ERVL 4768 5757 -7 2296 201 47 38 chrY 834664 835171 -23877908 + MLT2B1 LTR ERVL 1 512 -8 392 184 31 20 chrY 835172 835270 -23877809 + L1MB8 LINE L1 6074 6172 -6 690 224 82 0 chrY 835461 835608 -23877471 + L1PA13 LINE L1 1 159 -6628 * 14072 175 19 11 chrY 835606 836434 -23876645 + L1PA13 LINE L1 3007 3827 -2987 411 73 0 0 chrY 836434 836489 -23876590 + (TA)n Simple_repeat Simple_repeat 1 55 0 14072 175 19 11 chrY 836489 839371 -23873708 + L1PA13 LINE L1 3827 6744 -70 220 211 11 56 chrY 839996 840086 -23872993 + A-rich Low_complexity Low_complexity 4 89 0 828 302 44 40 chrY 840093 840567 -23872512 + L1MC4a LINE L1 5643 6118 -1926 262 64 0 43 chrY 840603 840650 -23872429 + (TA)n Simple_repeat Simple_repeat 2 46 0 316 253 10 40 chrY 840652 840751 -23872328 - L1MC4 LINE L1 -1340 6702 6607 349 230 65 50 chrY 840861 841000 -23872079 + L1MC4a LINE L1 6336 6476 -1568 * 3355 220 40 23 chrY 840992 842651 -23870428 + L1MC2 LINE L1 4199 5393 -753 1334 198 34 22 chrY 842652 842976 -23870103 + L1MC2 LINE L1 6006 6333 -11 3439 225 73 24 chrY 843060 843918 -23869161 + L1MD2 LINE L1 5276 6194 -165 2247 62 21 0 chrY 843918 844208 -23868871 - AluY SINE Alu -15 296 1 3439 225 73 24 chrY 844208 844374 -23868705 + L1MD2 LINE L1 6194 6350 -9 23 0 0 0 chrY 846365 846388 -23866691 + AT_rich Low_complexity Low_complexity 1 23 0 996 296 47 73 chrY 846865 847862 -23865217 + L1ME LINE L1 490 1460 -5070 593 307 106 45 chrY 847863 849049 -23864030 + L1ME LINE L1 1413 2713 -3929 2847 203 50 9 chrY 849059 849911 -23863168 + L1MC2 LINE L1 4967 5850 -494 645 333 66 35 chrY 849912 850566 -23862513 - L1M4 LINE L1 -1531 4615 3942 186 43 0 0 chrY 850569 850592 -23862487 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1766 120 14 25 chrY 850595 850879 -23862200 - AluSx SINE Alu -31 281 1 591 76 0 0 chrY 851511 851628 -23861451 - AluY SINE Alu 0 320 204 1944 114 3 7 chrY 851702 852026 -23861053 - AluSg SINE Alu 0 310 1 22 35 0 0 chrY 853327 853356 -23859723 + AT_rich Low_complexity Low_complexity 1 29 0 2177 90 13 26 chrY 853543 853854 -23859225 + AluSx SINE Alu 1 307 -5 2162 82 3 44 chrY 854060 854379 -23858700 + AluY SINE Alu 1 306 -5 424 275 101 26 chrY 858257 858753 -23854326 - L1ME LINE L1 -594 5572 5040 342 125 0 31 chrY 858758 858822 -23854257 - L1PA8 LINE L1 -4 6168 6107 1631 74 83 0 chrY 858822 859052 -23854027 - L1PA8 LINE L1 -30 6142 5894 1300 129 23 5 chrY 859121 859338 -23853741 - pTR5 LTR ERV1 -2046 392 172 365 224 10 0 chrY 859341 859439 -23853640 - LTR30 LTR ERV1 -80 642 544 4133 136 59 79 chrY 859439 860456 -23852623 - pTR5 LTR ERV1 -413 2025 743 21 0 0 0 chrY 861106 861127 -23851952 + AT_rich Low_complexity Low_complexity 1 21 0 34 42 0 0 chrY 861966 862014 -23851065 + AT_rich Low_complexity Low_complexity 1 48 0 212 250 0 0 chrY 862553 862597 -23850482 + (TG)n Simple_repeat Simple_repeat 2 45 0 21 36 0 0 chrY 863053 863081 -23849998 + AT_rich Low_complexity Low_complexity 1 28 0 32209 109 10 44 chrY 864855 867250 -23845829 - L1PA7 LINE L1 -5 6149 3675 2227 105 0 23 chrY 867250 867555 -23845524 - AluY SINE Alu -13 298 1 32209 109 10 44 chrY 867555 871129 -23841950 - L1PA7 LINE L1 -2479 3675 414 243 0 0 0 chrY 871129 871156 -23841923 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 32209 109 10 44 chrY 871156 871546 -23841533 - L1PA7 LINE L1 -5740 414 12 1059 166 5 49 chrY 871577 871782 -23841297 + AluJb SINE Alu 99 294 -18 2445 170 17 7 chrY 872122 872539 -23840540 - MST-int LTR MaLR -173 1478 1058 230 307 30 10 chrY 873012 873113 -23839966 - L1ME LINE L1 -5962 108 6 23 0 0 0 chrY 873113 873136 -23839943 + AT_rich Low_complexity Low_complexity 1 23 0 26 30 0 0 chrY 874175 874208 -23838871 + AT_rich Low_complexity Low_complexity 1 33 0 345 208 0 0 chrY 875195 875272 -23837807 + (TATATG)n Simple_repeat Simple_repeat 6 82 0 331 311 0 0 chrY 875273 875363 -23837716 + L1MC4 LINE L1 6615 6704 -1338 22 56 0 0 chrY 875544 875580 -23837499 + AT_rich Low_complexity Low_complexity 1 36 0 186 200 0 0 chrY 875956 876002 -23837077 + (TA)n Simple_repeat Simple_repeat 2 50 -6 2231 202 103 41 chrY 876002 876738 -23836341 + LTR1 LTR ERV1 1 782 -3 186 200 0 0 chrY 876738 876746 -23836333 + (TA)n Simple_repeat Simple_repeat 49 56 0 21 36 0 0 chrY 879368 879396 -23833683 + AT_rich Low_complexity Low_complexity 1 28 0 306 325 107 24 chrY 880389 880558 -23832521 + L1MEd LINE L1 3 185 -5934 2164 149 20 73 chrY 880596 880793 -23832286 + MSTB LTR MaLR 1 207 -219 2034 154 0 0 chrY 880793 881105 -23831974 + AluSx SINE Alu 1 312 0 2164 149 20 73 chrY 881105 881357 -23831722 + MSTB LTR MaLR 207 426 0 276 331 84 24 chrY 881395 881561 -23831518 + L1MEd LINE L1 269 444 -5675 1166 304 22 25 chrY 881740 882141 -23830938 + MLT1E3 LTR MaLR 225 624 0 224 149 21 0 chrY 882496 882543 -23830536 + (TCTA)n Simple_repeat Simple_repeat 3 50 0 642 284 148 33 chrY 882554 883076 -23830003 + L1MC4a LINE L1 5290 5871 -1937 1979 168 94 3 chrY 883256 883648 -23829431 - MSTA LTR MaLR 0 428 1 2139 145 23 6 chrY 883648 884000 -23829079 - MSTA-int LTR MaLR 0 1651 1294 326 309 44 39 chrY 884076 884257 -23828822 + LTR16C LTR ERVL 260 441 -50 380 293 94 17 chrY 884383 884735 -23828344 + L1ME3A LINE L1 5493 5878 -288 435 151 65 11 chrY 884814 884907 -23828172 + MER4A LTR ERV1 1 98 -566 1590 140 164 75 chrY 884907 885278 -23827801 + MER4A LTR ERV1 261 664 0 2368 105 58 43 chrY 885281 885598 -23827481 + MER4A-int LTR ERV1 1 312 -6286 315 0 0 0 chrY 885598 885633 -23827446 + (TG)n Simple_repeat Simple_repeat 1 35 0 2368 105 58 43 chrY 885633 885907 -23827172 + MER4A-int LTR ERV1 312 660 -5938 1658 77 89 52 chrY 885894 886289 -23826790 + MER4A-int LTR ERV1 504 817 -4198 * 3238 77 80 4 chrY 886282 886792 -23826287 + MER4A-int LTR ERV1 1809 2357 -4241 281 154 19 0 chrY 886792 886844 -23826235 + MER4A LTR ERV1 608 660 -4 1905 160 150 5 chrY 887284 887658 -23825421 + MSTA LTR MaLR 1 428 0 387 41 0 0 chrY 888563 888612 -23824467 + (TG)n Simple_repeat Simple_repeat 2 50 0 192 40 0 0 chrY 889261 889286 -23823793 + (A)n Simple_repeat Simple_repeat 1 25 0 24 0 0 0 chrY 889640 889664 -23823415 + AT_rich Low_complexity Low_complexity 1 24 0 268 358 80 11 chrY 889971 890093 -23822986 - MIR SINE MIR -16 246 105 2023 90 8 0 chrY 890093 890359 -23822720 + AluSq SINE Alu 38 305 -8 268 358 80 11 chrY 890359 890423 -23822656 - MIR SINE MIR -157 105 47 1596 201 0 14 chrY 891049 891338 -23821741 + AluJo SINE Alu 3 287 -25 273 29 0 0 chrY 891380 891414 -23821665 + (CA)n Simple_repeat Simple_repeat 2 35 0 234 0 0 0 chrY 891573 891599 -23821480 + (CA)n Simple_repeat Simple_repeat 2 27 0 253 254 18 0 chrY 891728 891783 -23821296 - L2 LINE L2 -14 3299 3244 2155 130 3 0 chrY 892830 893137 -23819942 + AluSq SINE Alu 3 310 -3 908 216 5 32 chrY 893225 893395 -23819684 + Tigger1 DNA MER2_type 1 165 -2253 3408 101 63 51 chrY 893395 893998 -23819081 - MER4B LTR ERV1 0 610 1 908 216 5 32 chrY 893998 894040 -23819039 + Tigger1 DNA MER2_type 165 207 -2211 505 237 63 78 chrY 894040 894400 -23818679 + LTR18B LTR ERVL 1 600 -2 12567 153 17 19 chrY 894408 895469 -23817610 + Tigger1 DNA MER2_type 203 1264 -1154 2384 77 0 0 chrY 895469 895755 -23817324 - AluY SINE Alu -25 286 1 12567 153 17 19 chrY 895755 896912 -23816167 + Tigger1 DNA MER2_type 1264 2417 -1 1138 232 3 35 chrY 897594 897913 -23815166 - L1PBb LINE L1 -869 6715 6407 6057 133 193 90 chrY 897913 899451 -23813628 - pTR5 LTR ERV1 -2 2436 741 11167 232 28 15 chrY 899463 899848 -23813231 - L1PBb LINE L1 -1183 6401 6023 2189 197 26 5 chrY 899848 900265 -23812814 - MSTB LTR MaLR 0 426 1 11167 232 28 15 chrY 900265 904380 -23808699 - L1PBb LINE L1 -1561 6023 1752 551 313 38 34 chrY 904572 904837 -23808242 - L1PBb LINE L1 -5788 1797 1532 225 222 0 0 chrY 904994 905039 -23808040 + L1M2b LINE L1 168 212 -6997 518 175 21 10 chrY 905087 905184 -23807895 + MER4A LTR ERV1 1 98 -566 1612 136 14 36 chrY 905184 905536 -23807543 + MER4A LTR ERV1 261 663 -1 504 246 8 8 chrY 905538 905660 -23807419 - L1PBb LINE L1 -7450 131 10 821 214 60 15 chrY 905730 905931 -23807148 + L1M4b LINE L1 4 213 -6646 524 125 0 0 chrY 905931 906011 -23807068 + MADE1 DNA Mariner 1 80 0 233 282 84 0 chrY 906081 906152 -23806927 + MER50 LTR ERV1 46 122 -612 1136 270 122 58 chrY 906153 906342 -23806737 + MER50 LTR ERV1 26 201 -533 7562 29 5 0 chrY 906342 907438 -23805641 + L1PA5 LINE L1 5053 6152 -2 1136 270 122 58 chrY 907438 907810 -23805269 + MER50 LTR ERV1 201 633 -101 3267 106 11 42 chrY 907810 908337 -23804742 - MER9 LTR ERVK 0 511 1 1136 270 122 58 chrY 908337 908396 -23804683 + MER50 LTR ERV1 633 687 -47 393 274 28 9 chrY 908426 908532 -23804547 + MER50-int LTR ERV1 18 125 -7080 6182 255 22 50 chrY 908596 910392 -23802687 + MER50-int LTR ERV1 97 1843 -5362 2783 162 4 35 chrY 910428 910886 -23802193 + MER50-int LTR ERV1 1004 1447 -3433 2138 131 0 0 chrY 910886 911183 -23801896 + AluSx SINE Alu 1 297 -15 2783 162 4 35 chrY 911183 911217 -23801862 + MER50-int LTR ERV1 1447 1481 -3399 3013 154 20 15 chrY 911217 911992 -23801087 + MER50-int LTR ERV1 3391 4394 -486 414 168 76 42 chrY 912096 912215 -23800864 + MER50-int LTR ERV1 3608 3730 -2868 922 140 29 22 chrY 912255 912462 -23800617 + MER50-int LTR ERV1 3738 4539 -341 482 133 0 0 chrY 912455 912530 -23800549 + MER50-int LTR ERV1 2883 2957 -2989 * 792 210 0 6 chrY 912524 912681 -23800398 + MER50-int LTR ERV1 3689 3844 -3693 * 1052 219 19 0 chrY 912678 912883 -23800196 + MER50-int LTR ERV1 6180 6388 -817 546 345 15 8 chrY 912867 913134 -23799945 + MER50-int LTR ERV1 3744 4012 -273 * 776 263 44 19 chrY 913149 913354 -23799725 + MER50-int LTR ERV1 6985 7194 -11 380 273 109 0 chrY 913358 913468 -23799611 + MER50 LTR ERV1 1 122 -612 1206 284 128 36 chrY 913469 914078 -23799001 + MER50 LTR ERV1 26 690 -44 3055 293 109 19 chrY 914138 916040 -23797039 + L1M4b LINE L1 228 2263 -4696 1894 262 51 8 chrY 916010 916873 -23796206 + L1M4b LINE L1 3279 4178 -2779 * 2639 216 100 7 chrY 916992 918067 -23795012 - L1MB8 LINE L1 0 6178 4993 460 256 15 36 chrY 918106 918243 -23794836 + MERVL-C2 LTR ERVL 3288 3421 -2064 * 4825 223 23 2 chrY 918224 919191 -23793888 + MERVL-C2 LTR ERVL 3525 4511 -1253 1587 220 25 35 chrY 919191 919587 -23793492 - MER50 LTR ERV1 -1 733 342 1448 84 0 0 chrY 919588 919767 -23793312 - AluY SINE Alu 0 311 133 2499 68 0 0 chrY 919767 920074 -23793005 - AluY SINE Alu -4 307 1 862 185 13 13 chrY 920154 920311 -23792768 - MER50 LTR ERV1 -566 168 12 387 335 7 7 chrY 920402 920557 -23792522 - MER52A LTR ERV1 0 1755 1601 841 238 49 117 chrY 920560 920971 -23792108 - MER52A LTR ERV1 -281 1474 1092 * 1064 216 52 93 chrY 920956 921280 -23791799 - MER52A LTR ERV1 -785 970 660 9097 113 12 24 chrY 921282 922269 -23790810 - MER52-int LTR ERV1 0 7091 6124 1963 152 3 3 chrY 922269 922566 -23790513 - AluSx SINE Alu -14 298 2 9097 113 12 24 chrY 922566 922937 -23790142 - MER52-int LTR ERV1 -967 6124 5750 19314 159 27 17 chrY 922952 926498 -23786581 - MER52-int LTR ERV1 -2223 4868 1003 191 269 30 45 chrY 926513 926580 -23786499 + MIR3 SINE MIR 135 200 -8 2023 242 42 12 chrY 926580 927154 -23785925 + MERVL-C2 LTR ERVL 5167 5757 -7 1757 234 46 7 chrY 927163 927598 -23785481 + MLT2C2 LTR ERVL 11 462 -2 21 57 0 0 chrY 927624 927659 -23785420 + AT_rich Low_complexity Low_complexity 1 35 0 415 259 41 53 chrY 927704 927874 -23785205 + MER3 DNA MER1_type 28 195 -14 1492 290 37 27 chrY 928178 928767 -23784312 - L1MEc LINE L1 -5765 631 37 196 159 0 43 chrY 928852 928921 -23784158 + A-rich Low_complexity Low_complexity 4 69 0 2051 73 0 15 chrY 929050 929311 -23783768 - AluY SINE Alu -16 295 39 21 36 0 0 chrY 929700 929728 -23783351 + AT_rich Low_complexity Low_complexity 1 28 0 2306 97 10 0 chrY 930439 930739 -23782340 + AluSc SINE Alu 1 303 -6 294 238 203 21 chrY 930773 930916 -23782163 - L1MD3 LINE L1 0 7995 7827 227 88 70 44 chrY 930916 931030 -23782049 + (TA)n Simple_repeat Simple_repeat 1 117 0 785 223 102 28 chrY 931036 931319 -23781760 - L1MC3 LINE L1 -185 7600 7297 * 1033 277 20 3 chrY 931318 931614 -23781465 - L1MC3 LINE L1 -926 6859 6559 1143 216 37 11 chrY 931662 931930 -23781149 - L1MC3 LINE L1 -1210 6575 6301 1222 237 58 6 chrY 931962 932287 -23780792 - L1MB7 LINE L1 -20 6164 5823 3649 223 60 27 chrY 932369 933509 -23779570 - L1MC2 LINE L1 -144 6200 4980 554 106 0 0 chrY 933509 933603 -23779476 - L1PA15 LINE L1 -4 6161 6068 3649 223 60 27 chrY 933603 934321 -23778758 - L1MC2 LINE L1 -1364 4980 4288 4139 158 53 12 chrY 934321 935154 -23777925 + L1MA7 LINE L1 5425 6291 0 873 274 50 6 chrY 935167 935484 -23777595 - L1MC2 LINE L1 -3386 2760 2430 495 157 56 0 chrY 935498 935587 -23777492 - AluJ/FLAM SINE Alu -218 94 1 9615 224 63 16 chrY 935587 939440 -23773639 - L1PB4 LINE L1 -154 6705 2662 5825 236 20 7 chrY 939414 941656 -23771423 - L1PA13 LINE L1 -3160 3637 1355 * 2616 142 70 32 chrY 941653 941993 -23771086 + THE1-int LTR MaLR 811 1173 -407 * 2350 98 0 0 chrY 941993 942288 -23770791 + AluSg SINE Alu 1 295 -15 2616 142 70 32 chrY 942288 942390 -23770689 + THE1-int LTR MaLR 1173 1270 -310 6030 124 30 20 chrY 942402 943492 -23769587 + L1MA2 LINE L1 5206 6304 0 1074 267 49 25 chrY 943525 944322 -23768757 - L1M4 LINE L1 -3473 2909 2094 2494 261 68 29 chrY 944392 945575 -23767504 - L1M4 LINE L1 -4485 1899 777 915 234 98 51 chrY 945990 946438 -23766641 + L1ME1 LINE L1 4709 5177 -969 * 24913 153 26 17 chrY 946432 950667 -23762412 - L1PA8 LINE L1 -20 6467 2171 2193 61 0 0 chrY 950667 950930 -23762149 + AluY SINE Alu 36 298 -13 24913 153 26 17 chrY 950930 952344 -23760735 - L1PA8 LINE L1 -4316 2171 771 2503 191 14 14 chrY 952350 952848 -23760231 - L1PA8 LINE L1 -5373 502 5 1027 277 110 22 chrY 952962 952988 -23760091 + L1ME1 LINE L1 5285 5307 -859 222 37 0 0 chrY 952988 953015 -23760064 + (CAA)n Simple_repeat Simple_repeat 1 27 0 1027 277 110 22 chrY 953015 953547 -23759532 + L1ME1 LINE L1 5307 5898 -268 2366 223 13 2 chrY 953549 954002 -23759077 + MLT2B2 LTR ERVL 1 458 -57 271 257 0 0 chrY 954002 954072 -23759007 + CT-rich Low_complexity Low_complexity 2 71 0 2650 113 19 16 chrY 954896 955322 -23757757 - L1PA8 LINE L1 -1089 5057 4631 6542 74 18 9 chrY 955324 956413 -23756666 + L1PA8 LINE L1 5060 6156 -16 2327 95 3 0 chrY 956417 956713 -23756366 - AluSg SINE Alu -13 297 1 2887 155 20 0 chrY 956738 957229 -23755850 - L1PA13 LINE L1 -11 6152 5652 3439 212 21 0 chrY 957279 958024 -23755055 + L1P4 LINE L1 3991 4751 -1395 2178 80 48 0 chrY 958026 958315 -23754764 + AluSg SINE Alu 1 303 -7 216 0 0 0 chrY 958321 958345 -23754734 + (A)n Simple_repeat Simple_repeat 1 24 0 23 54 0 0 chrY 960603 960640 -23752439 + AT_rich Low_complexity Low_complexity 1 37 0 739 183 38 27 chrY 962533 962716 -23750363 + MIR SINE MIR 31 213 -49 2891 183 8 8 chrY 962815 963682 -23749397 + L1P4 LINE L1 4739 5603 -558 28 48 0 0 chrY 964805 964847 -23748232 + AT_rich Low_complexity Low_complexity 1 42 0 31 0 0 0 chrY 964990 965021 -23748058 + AT_rich Low_complexity Low_complexity 1 31 0 33 43 0 0 chrY 965060 965107 -23747972 + AT_rich Low_complexity Low_complexity 1 47 0 234 0 0 0 chrY 965110 965136 -23747943 + (TG)n Simple_repeat Simple_repeat 1 26 0 528 342 16 5 chrY 965236 965423 -23747656 - MIR SINE MIR -56 206 18 2069 144 3 0 chrY 965712 966017 -23747062 + AluSx SINE Alu 1 306 -6 941 258 34 18 chrY 966484 966841 -23746238 + MSTD LTR MaLR 1 396 0 1892 155 117 8 chrY 967084 967470 -23745609 + MSTA LTR MaLR 1 428 0 31 26 0 0 chrY 967732 967770 -23745309 + AT_rich Low_complexity Low_complexity 1 38 0 359 256 56 50 chrY 968160 968340 -23744739 + L1MCc LINE L1 28 208 -6215 482 279 63 11 chrY 968608 968877 -23744202 + L1ME2 LINE L1 4960 5242 -904 1426 230 70 28 chrY 968900 968969 -23744110 + L1ME2 LINE L1 5663 5728 -436 2224 109 0 0 chrY 968969 969272 -23743807 + AluSc SINE Alu 2 304 -5 1426 230 70 28 chrY 969272 969675 -23743404 + L1ME2 LINE L1 5728 6155 -9 324 374 0 8 chrY 969715 969838 -23743241 + MER5A DNA MER1_type 64 185 -4 2058 268 51 45 chrY 969958 970715 -23742364 - L1MEc LINE L1 -4923 1473 706 2191 64 3 7 chrY 970715 971039 -23742040 + AluY SINE Alu 1 311 0 2058 268 51 45 chrY 971039 971338 -23741741 - L1MEc LINE L1 -5690 706 410 488 264 61 17 chrY 971490 971721 -23741358 - L1MDb LINE L1 -5000 1083 843 5048 129 15 4 chrY 972017 972815 -23740264 - L1PA16 LINE L1 0 6166 5360 444 301 81 56 chrY 972875 973284 -23739795 - L1MDb LINE L1 -5416 654 236 35 63 0 0 chrY 974348 974411 -23738668 + AT_rich Low_complexity Low_complexity 1 63 0 187 259 12 111 chrY 974549 974630 -23738449 - L2 LINE L2 -4 3309 3237 42 0 0 0 chrY 974806 974848 -23738231 + AT_rich Low_complexity Low_complexity 1 42 0 1645 142 82 51 chrY 975131 975314 -23737765 + THE1B LTR MaLR 1 177 -187 204 40 0 0 chrY 975314 975339 -23737740 + (TC)n Simple_repeat Simple_repeat 1 25 0 1645 142 82 51 chrY 975339 975508 -23737571 + THE1B LTR MaLR 177 364 0 7455 148 106 51 chrY 975510 977005 -23736074 + THE1B-int LTR MaLR 3 1580 0 1603 157 74 44 chrY 977005 977369 -23735710 + THE1C LTR MaLR 1 375 0 1659 265 40 19 chrY 977370 977841 -23735238 + LTR40a LTR ERVL 37 517 -2 2624 183 66 74 chrY 978723 978943 -23734136 + MER67B LTR ERV1 1 221 -440 2757 118 47 2 chrY 978943 979408 -23733671 - LTR19A LTR ERV1 0 486 1 2624 183 66 74 chrY 979408 979514 -23733565 + MER67B LTR ERV1 221 326 -335 2662 48 0 0 chrY 979514 979825 -23733254 - AluY SINE Alu 0 311 1 2624 183 66 74 chrY 979825 980163 -23732916 + MER67B LTR ERV1 326 661 0 281 360 48 0 chrY 980816 980963 -23732116 + MIR SINE MIR 30 183 -79 1746 179 107 87 chrY 980965 981553 -23731526 + MER4A LTR ERV1 1 600 0 202 390 77 16 chrY 981780 981962 -23731117 + L3 LINE CR1 115 307 -1270 339 352 138 15 chrY 982541 982737 -23730342 + L3 LINE CR1 473 692 -885 351 391 87 16 chrY 982826 983138 -23729941 + L3 LINE CR1 1235 1568 -9 24 0 0 0 chrY 983182 983206 -23729873 + AT_rich Low_complexity Low_complexity 1 24 0 2397 100 42 50 chrY 983384 983764 -23729315 + MER51B LTR ERV1 1 377 0 2421 148 76 17 chrY 984034 984493 -23728586 - LTR19A LTR ERV1 0 486 1 258 376 11 0 chrY 984811 984904 -23728175 - MIR3 SINE MIR -102 106 13 22 35 0 0 chrY 986904 986933 -23726146 + AT_rich Low_complexity Low_complexity 1 29 0 24 53 0 0 chrY 986987 987025 -23726054 + AT_rich Low_complexity Low_complexity 1 38 0 257 280 76 0 chrY 988516 988634 -23724445 - L1MC/D LINE L1 -2015 5793 5667 26 0 0 0 chrY 988634 988660 -23724419 + AT_rich Low_complexity Low_complexity 1 26 0 254 299 17 34 chrY 988676 988793 -23724286 - L1MC/D LINE L1 -2200 5585 5471 641 261 67 15 chrY 989375 989570 -23723509 - MIR SINE MIR -57 205 1 1541 201 48 20 chrY 989745 990137 -23722942 + L1MB1 LINE L1 5761 6163 -5 225 0 0 0 chrY 990796 990821 -23722258 + (CA)n Simple_repeat Simple_repeat 2 26 0 348 339 46 0 chrY 990963 991072 -23722007 - L2 LINE L2 -1 3271 3158 323 365 52 16 chrY 991596 991788 -23721291 - MIR SINE MIR -19 243 45 1535 80 0 68 chrY 992423 992506 -23720573 + L1MA1 LINE L1 6057 6144 -158 2102 126 0 3 chrY 992506 992816 -23720263 - AluSx SINE Alu -3 309 1 1535 80 0 68 chrY 992816 992996 -23720083 + L1MA1 LINE L1 6144 6302 0 1338 153 36 0 chrY 993555 993777 -23719302 + MER30 DNA MER1_type 1 230 0 3143 213 50 48 chrY 994205 995039 -23718040 - L1MA10 LINE L1 -3 6331 5496 1988 91 66 3 chrY 995039 995325 -23717754 - AluSx SINE Alu -8 304 1 3501 212 85 24 chrY 995373 995841 -23717238 - L1MA8 LINE L1 -10 6281 5843 441 0 0 0 chrY 995841 995890 -23717189 + (TA)n Simple_repeat Simple_repeat 2 50 0 3501 212 85 24 chrY 995890 996544 -23716535 - L1MA8 LINE L1 -448 5843 5092 827 246 10 0 chrY 996533 996728 -23716351 + L1 LINE L1 4030 4226 -1920 * 7194 215 176 12 chrY 996753 998501 -23714578 + L1M1 LINE L1 13 2046 -5519 * 10659 191 58 42 chrY 998498 999590 -23713489 + L1M1 LINE L1 2565 3638 -3927 180 97 0 0 chrY 999590 999621 -23713458 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 10659 191 58 42 chrY 999621 1000455 -23712624 + L1M1 LINE L1 3638 4457 -3108 1039 116 22 6 chrY 1000455 1000636 -23712443 + L1MA1 LINE L1 6119 6302 0 10659 191 58 42 chrY 1000636 1001416 -23711663 + L1M1 LINE L1 4457 5223 -2342 639 140 0 0 chrY 1001416 1001516 -23711563 - FLAM_C SINE Alu -12 131 32 10659 191 58 42 chrY 1001516 1002832 -23710247 + L1M1 LINE L1 5223 6753 -812 236 164 0 55 chrY 1002861 1002916 -23710163 + Alu SINE Alu 251 302 0 2896 176 14 9 chrY 1002934 1003503 -23709576 + L1 LINE L1 4553 5124 -1022 2003 141 3 3 chrY 1003547 1003565 -23709514 - AluSx SINE Alu 0 312 295 186 43 0 0 chrY 1003565 1003588 -23709491 + (TATG)n Simple_repeat Simple_repeat 2 24 0 2003 141 3 3 chrY 1003588 1003881 -23709198 - AluSx SINE Alu -16 296 1 26 30 0 0 chrY 1004285 1004318 -23708761 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chrY 1004544 1004565 -23708514 + AT_rich Low_complexity Low_complexity 1 21 0 204 299 35 23 chrY 1004896 1004983 -23708096 - MIR SINE MIR -116 146 59 6152 156 5 1 chrY 1006050 1007014 -23706065 - L1PA14 LINE L1 -4895 2686 1719 9596 233 46 22 chrY 1007021 1008375 -23704704 + L1PA14 LINE L1 2711 4030 -3554 2010 164 13 24 chrY 1008375 1008752 -23704327 - THE1C LTR MaLR -2 373 1 9596 233 46 22 chrY 1008752 1010057 -23703022 + L1PA14 LINE L1 4030 5426 -2158 1830 176 83 18 chrY 1010057 1010575 -23702504 + MLT2A2 LTR ERVL 1 546 -8 6519 199 31 3 chrY 1010578 1011238 -23701841 + L1PA14 LINE L1 5421 6062 -1537 2652 20 7 0 chrY 1011238 1011541 -23701538 - AluY SINE Alu -6 305 1 6519 199 31 3 chrY 1011541 1012368 -23700711 + L1PA14 LINE L1 6062 6950 -649 324 0 0 0 chrY 1012368 1012404 -23700675 + (TAA)n Simple_repeat Simple_repeat 1 36 0 6519 199 31 3 chrY 1012404 1013072 -23700007 + L1PA14 LINE L1 6950 7598 -1 33 0 0 0 chrY 1013862 1013895 -23699184 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chrY 1014143 1014164 -23698915 + AT_rich Low_complexity Low_complexity 1 21 0 2322 65 0 32 chrY 1014419 1014729 -23698350 - AluY SINE Alu -11 300 1 444 303 12 37 chrY 1015614 1015855 -23697224 + L1MCb LINE L1 41 275 -5770 1684 220 39 21 chrY 1015951 1016622 -23696457 + L1M4 LINE L1 4880 5566 -618 1559 232 135 7 chrY 1016615 1017163 -23695916 + L1MC3 LINE L1 5376 5993 -2049 * 1089 194 90 19 chrY 1017176 1017444 -23695635 - MLT1C LTR MaLR -153 314 28 3154 213 56 18 chrY 1017469 1018315 -23694764 + L1MC3 LINE L1 6785 7661 -124 605 159 18 9 chrY 1018315 1018428 -23694651 - MER57A LTR ERV1 -289 114 1 1383 149 7 64 chrY 1018428 1018710 -23694369 - MER57A-int LTR ERV1 0 7537 7272 635 163 24 8 chrY 1018710 1018833 -23694246 - LTR54B LTR ERV1 -371 127 3 4725 91 12 0 chrY 1018833 1019483 -23693596 - MER57A-int LTR ERV1 -391 7146 6489 4913 88 9 54 chrY 1019494 1019877 -23693202 + L1PB1 LINE L1 5397 5796 -355 210 105 0 0 chrY 1019877 1019915 -23693164 + (TTTA)n Simple_repeat Simple_repeat 1 38 0 4913 88 9 54 chrY 1019915 1020135 -23692944 + L1PB1 LINE L1 5796 5958 -193 2411 77 0 0 chrY 1020135 1020432 -23692647 + AluY SINE Alu 1 297 -14 4913 88 9 54 chrY 1020432 1020618 -23692461 + L1PB1 LINE L1 5958 6151 0 14244 104 26 19 chrY 1020631 1022487 -23690592 - MER57A-int LTR ERV1 -1423 6114 4272 180 0 0 0 chrY 1022487 1022507 -23690572 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1814 147 0 0 chrY 1022514 1022779 -23690300 - AluSx SINE Alu -37 275 11 14244 104 26 19 chrY 1022779 1023122 -23689957 - MER57A-int LTR ERV1 -3270 4267 3892 6642 138 24 16 chrY 1023124 1024222 -23688857 - MER57A-int LTR ERV1 -3761 2185 1079 1707 142 4 11 chrY 1024208 1024468 -23688611 - MER57A-int LTR ERV1 -5328 618 361 * 5273 139 7 12 chrY 1024461 1025269 -23687810 - MER57A-int LTR ERV1 -6731 806 3 2433 145 10 2 chrY 1025271 1025671 -23687408 - MER57A LTR ERV1 0 403 1 23 33 0 0 chrY 1026376 1026406 -23686673 + AT_rich Low_complexity Low_complexity 1 30 0 3660 115 13 0 chrY 1026544 1027091 -23685988 + MER41A LTR ERV1 1 554 0 1199 191 0 4 chrY 1027138 1027368 -23685711 + L1PB4 LINE L1 5928 6156 0 5951 55 1 18 chrY 1027916 1028695 -23684384 + MER4E LTR ERV1 1 766 0 21 0 0 0 chrY 1029087 1029108 -23683971 + AT_rich Low_complexity Low_complexity 1 21 0 22 80 0 0 chrY 1029383 1029433 -23683646 + AT_rich Low_complexity Low_complexity 1 50 0 180 259 0 19 chrY 1030455 1030509 -23682570 + L2 LINE L2 1968 2020 -1294 825 332 82 47 chrY 1030646 1030707 -23682372 + L2 LINE L2 2284 2341 -972 327 25 0 0 chrY 1030707 1030747 -23682332 + (TG)n Simple_repeat Simple_repeat 1 40 0 825 332 82 47 chrY 1030747 1030959 -23682120 + L2 LINE L2 2341 2544 -769 2059 79 3 20 chrY 1030959 1031262 -23681817 + L1MA1 LINE L1 6004 6301 -1 825 332 82 47 chrY 1031262 1031749 -23681330 + L2 LINE L2 2544 3068 -245 1797 185 3 0 chrY 1035097 1035525 -23677554 + AluJo SINE Alu 8 436 0 518 176 107 23 chrY 1035612 1035743 -23677336 + L1MC5 LINE L1 7305 7446 -515 1360 176 0 0 chrY 1035751 1035972 -23677107 - AluJo SINE Alu -8 304 84 473 191 38 118 chrY 1035999 1036107 -23676972 + L1MC5 LINE L1 7478 7593 -368 288 111 0 0 chrY 1036107 1036152 -23676927 + (TG)n Simple_repeat Simple_repeat 1 45 0 473 191 38 118 chrY 1036152 1036174 -23676905 + L1MC5 LINE L1 7593 7615 -346 2515 71 0 3 chrY 1036174 1036482 -23676597 + AluY SINE Alu 1 307 -4 473 191 38 118 chrY 1036482 1036638 -23676441 + L1MC5 LINE L1 7615 7742 -219 * 1275 231 39 3 chrY 1036610 1036918 -23676161 - L1MD2 LINE L1 -13 6346 6028 747 242 7 0 chrY 1036940 1037093 -23675986 - AluJb SINE Alu -22 290 137 2746 232 40 11 chrY 1037096 1037824 -23675255 - L1MD2 LINE L1 -323 6036 5288 * 14720 112 7 16 chrY 1037810 1037825 -23675254 + L1P3 LINE L1 407 421 -6040 15498 95 4 5 chrY 1037825 1040829 -23672250 - L1PA7 LINE L1 -4 6150 3148 14720 112 7 16 chrY 1040829 1043583 -23669496 + L1P3 LINE L1 421 3158 -3303 2199 95 7 0 chrY 1043583 1043866 -23669213 + AluY SINE Alu 1 285 -26 14720 112 7 16 chrY 1043866 1044094 -23668985 + L1P3 LINE L1 3158 3387 -3074 524 167 28 9 chrY 1044089 1044197 -23668882 - L1MD2 LINE L1 -850 5296 5187 * 352 128 291 12 chrY 1044271 1044357 -23668722 + MER34 LTR ERV1 6 115 -427 698 255 129 32 chrY 1044360 1044722 -23668357 + MER39 LTR ERV1 221 665 -42 2295 282 137 26 chrY 1044756 1046186 -23666893 - L1MD2 LINE L1 -1036 5110 3522 1100 141 15 201 chrY 1046174 1046383 -23666696 - L1MDb LINE L1 -4997 1412 1336 * 1494 210 15 4 chrY 1046383 1046650 -23666429 - AluJb SINE Alu -38 274 5 1100 141 15 201 chrY 1046650 1046907 -23666172 - L1MDb LINE L1 -5073 1336 1033 252 204 0 0 chrY 1046922 1046971 -23666108 - MLT2B3 LTR ERVL 0 520 472 1900 211 79 7 chrY 1047111 1047524 -23665555 - MLT2B3 LTR ERVL -39 508 77 996 161 92 23 chrY 1047622 1047685 -23665394 - Ricksha DNA DNA -1630 416 339 1430 161 41 7 chrY 1047685 1048167 -23664912 - ERVL-B3 LTR ERVL 0 5764 5233 980 145 0 11 chrY 1048172 1048351 -23664728 + (TTTC)n Simple_repeat Simple_repeat 4 180 0 525 32 0 0 chrY 1048424 1048487 -23664592 + (TTCC)n Simple_repeat Simple_repeat 2 64 0 195 156 0 47 chrY 1048522 1048586 -23664493 + T-rich Low_complexity Low_complexity 4 64 0 * 534 70 0 0 chrY 1048572 1048643 -23664436 + (TTCC)n Simple_repeat Simple_repeat 2 72 0 779 101 0 23 chrY 1048715 1048844 -23664235 + (TTTCC)n Simple_repeat Simple_repeat 4 129 0 1652 193 3 31 chrY 1048844 1049206 -23663873 - AluJo SINE Alu 0 353 1 7875 175 16 5 chrY 1049206 1050538 -23662541 - ERVL-B3 LTR ERVL -522 5242 3896 338 217 0 0 chrY 1050597 1050666 -23662413 - MLT2B3 LTR ERVL -483 71 3 916 273 8 0 chrY 1050668 1050917 -23662162 - L1MDb LINE L1 -5387 1022 772 357 233 143 8 chrY 1051069 1051202 -23661877 + L1MC5 LINE L1 7751 7901 -60 1261 281 113 10 chrY 1051710 1052205 -23660874 + MLT1H LTR MaLR 1 546 -3 23 0 0 0 chrY 1052360 1052383 -23660696 + AT_rich Low_complexity Low_complexity 1 23 0 226 197 16 16 chrY 1052426 1052487 -23660592 - MLT1E2 LTR MaLR -2 624 564 975 233 79 98 chrY 1052487 1052894 -23660185 - MLT1E2 LTR MaLR -106 399 1 423 337 28 6 chrY 1052901 1053079 -23660000 - MIR SINE MIR -6 256 75 7847 208 40 19 chrY 1055333 1057430 -23655649 + L1MA9 LINE L1 2373 4514 -1632 4221 140 71 8 chrY 1057436 1058164 -23654915 - Tigger1 DNA MER2_type -1644 774 1 553 200 114 11 chrY 1058164 1058220 -23654859 + L1MDa LINE L1 1564 1613 -4927 5744 135 32 17 chrY 1058220 1059174 -23653905 + LTR5 LTR ERVK 1 969 0 553 200 114 11 chrY 1059174 1059292 -23653787 + L1MDa LINE L1 1613 1756 -4784 2953 211 21 6 chrY 1059560 1060514 -23652565 + L1MA9 LINE L1 4670 5642 -649 2981 106 31 18 chrY 1060514 1060968 -23652111 - LTR46 LTR ERV1 0 460 1 2136 124 3 3 chrY 1060968 1061275 -23651804 - LTR46-int LTR ERV1 0 6985 6679 18013 120 14 8 chrY 1061597 1064316 -23648763 - LTR46-int LTR ERV1 -312 6673 3938 * 18789 158 20 30 chrY 1064312 1067416 -23645663 - LTR46-int LTR ERV1 -3195 3790 659 3579 117 11 16 chrY 1067608 1068153 -23644926 - LTR46-int LTR ERV1 -6443 542 1 2962 99 50 14 chrY 1068153 1068597 -23644482 - LTR46 LTR ERV1 0 460 1 1008 136 0 0 chrY 1068598 1068753 -23644326 + L1MA9 LINE L1 5639 5793 -498 590 171 19 0 chrY 1068792 1068897 -23644182 - L1MA9 LINE L1 -216 6096 5990 2784 152 28 2 chrY 1068903 1069409 -23643670 + L1MA9 LINE L1 5794 6312 0 185 139 23 0 chrY 1069888 1069931 -23643148 + (TA)n Simple_repeat Simple_repeat 1 44 0 651 338 51 0 chrY 1069991 1070225 -23642854 + MIR SINE MIR 17 262 0 313 322 0 0 chrY 1070353 1070443 -23642636 - L1MC4 LINE L1 -1339 6703 6614 666 263 0 0 chrY 1070455 1070764 -23642315 + (TA)n Simple_repeat Simple_repeat 1 309 0 239 255 0 43 chrY 1070767 1070861 -23642218 - L1MC4 LINE L1 -1339 6703 6614 339 213 0 0 chrY 1070861 1070936 -23642143 + (CATATA)n Simple_repeat Simple_repeat 2 76 0 301 194 16 0 chrY 1070938 1071000 -23642079 - L1MCa LINE L1 -4358 2068 2006 258 192 0 0 chrY 1071001 1071053 -23642026 + (CA)n Simple_repeat Simple_repeat 2 53 0 324 322 0 0 chrY 1071053 1071143 -23641936 + L1MC4 LINE L1 6614 6703 -1339 336 311 0 0 chrY 1071153 1071243 -23641836 + L1MC4 LINE L1 6614 6703 -1339 * 338 237 0 43 chrY 1071209 1071302 -23641777 - L1MC4 LINE L1 -1339 6703 6615 313 322 0 0 chrY 1071261 1071351 -23641728 + L1MC4 LINE L1 6614 6703 -1339 * 180 125 0 0 chrY 1071351 1071383 -23641696 + (TA)n Simple_repeat Simple_repeat 2 33 0 1773 213 28 8 chrY 1071422 1071816 -23641263 - MER74A LTR ERVL -27 531 130 1105 233 77 34 chrY 1072580 1072958 -23640121 + MER110A LTR ERV1 22 415 -53 810 254 66 39 chrY 1072967 1073045 -23640034 + MER76 LTR ERV 244 318 -370 3145 192 68 0 chrY 1073045 1073664 -23639415 + MER67B LTR ERV1 1 661 0 810 254 66 39 chrY 1073664 1074001 -23639078 + MER76 LTR ERV 318 686 -2 431 301 57 16 chrY 1074069 1074494 -23638585 - L1ME LINE L1 -471 5699 5255 2015 175 23 17 chrY 1074761 1075222 -23637857 + MLT2A2 LTR ERVL 1 364 -89 213 250 133 0 chrY 1075335 1075395 -23637684 + L2 LINE L2 3246 3313 0 388 285 81 8 chrY 1075934 1076057 -23637022 - MIR3 SINE MIR -7 201 70 1595 215 0 6 chrY 1079587 1079899 -23633180 - AluJb SINE Alu -2 310 1 1317 66 33 0 chrY 1079936 1080119 -23632960 + LTR19A LTR ERV1 1 189 -297 4340 64 9 0 chrY 1080119 1080664 -23632415 + HERVFH19I LTR ERV1 2167 2716 -5003 643 249 117 10 chrY 1081158 1081363 -23631716 + AluJo SINE Alu 84 310 -2 236 340 78 0 chrY 1082399 1082502 -23630577 + L2 LINE L2 2543 2653 -661 369 291 99 35 chrY 1082526 1082667 -23630412 + L2 LINE L2 3163 3312 -1 22 99 0 0 chrY 1082924 1082995 -23630084 + AT_rich Low_complexity Low_complexity 1 71 0 1234 188 0 9 chrY 1083169 1083392 -23629687 - AluJb SINE Alu -91 221 1 189 74 0 0 chrY 1085323 1085350 -23627729 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 3740 258 114 10 chrY 1085359 1087406 -23625673 + L1PBa LINE L1 6 1643 -5220 387 0 0 0 chrY 1087406 1087449 -23625630 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 4870 179 85 19 chrY 1087521 1088957 -23624122 + L1PB3 LINE L1 640 1981 -4222 1884 154 39 22 chrY 1088957 1089321 -23623758 - THE1C LTR MaLR -3 372 3 8658 144 70 8 chrY 1089323 1090810 -23622269 - THE1C-int LTR MaLR 0 1580 2 1628 198 16 26 chrY 1090811 1091190 -23621889 - THE1C LTR MaLR 0 375 1 4870 179 85 19 chrY 1091190 1091547 -23621532 + L1PB3 LINE L1 1980 2547 -3656 4310 284 91 5 chrY 1091561 1092717 -23620362 + L1PA13 LINE L1 1 1255 -5532 18429 190 44 7 chrY 1092728 1097977 -23615102 + L1PA13 LINE L1 1399 6810 -4 10900 201 32 14 chrY 1097969 1098070 -23615009 + L1PB3 LINE L1 2540 2638 -3573 * 207 100 0 0 chrY 1098070 1098100 -23614979 + (CAA)n Simple_repeat Simple_repeat 1 30 0 10900 201 32 14 chrY 1098100 1098869 -23614210 + L1PB3 LINE L1 2638 3392 -2819 2408 128 17 6 chrY 1098869 1099229 -23613850 - THE1B LTR MaLR 0 364 1 10456 114 3 34 chrY 1099230 1100859 -23612220 - THE1B-int LTR MaLR -1 1579 1 2114 137 28 28 chrY 1100859 1101223 -23611856 - THE1B LTR MaLR 0 364 1 10900 201 32 14 chrY 1101223 1103951 -23609128 + L1PB3 LINE L1 3391 6211 0 23 33 0 0 chrY 1103961 1103991 -23609088 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chrY 1104934 1104955 -23608124 + AT_rich Low_complexity Low_complexity 1 21 0 682 224 37 5 chrY 1105043 1105206 -23607873 - MER45A DNA AcHobo 0 178 1 21 36 0 0 chrY 1105245 1105273 -23607806 + AT_rich Low_complexity Low_complexity 1 28 0 2410 134 0 19 chrY 1105315 1105681 -23607398 - THE1B LTR MaLR -5 359 1 435 193 0 0 chrY 1105681 1105764 -23607315 - L1MD1 LINE L1 -79 6163 6081 2305 244 38 31 chrY 1105775 1105994 -23607085 - L1MD2 LINE L1 -226 6133 5917 1066 227 129 9 chrY 1105994 1106320 -23606759 - MLT1A1 LTR MaLR 0 365 1 2305 244 38 31 chrY 1106320 1106735 -23606344 - L1MD2 LINE L1 -442 5917 5495 202 286 61 113 chrY 1107123 1107336 -23605743 + L2 LINE L2 2538 2739 -575 214 333 105 35 chrY 1107686 1107800 -23605279 + L2 LINE L2 3143 3264 -8 22 0 0 0 chrY 1107853 1107875 -23605204 + AT_rich Low_complexity Low_complexity 1 22 0 495 331 65 25 chrY 1109238 1109594 -23603485 + L1ME LINE L1 5403 5772 -349 297 0 0 0 chrY 1110566 1110599 -23602480 + (CA)n Simple_repeat Simple_repeat 2 34 0 1477 236 64 0 chrY 1110603 1110946 -23602133 + MLT1A1 LTR MaLR 1 365 0 720 162 0 22 chrY 1111761 1111897 -23601182 - FLAM_C SINE Alu 0 133 1 25 31 0 0 chrY 1112218 1112250 -23600829 + AT_rich Low_complexity Low_complexity 1 32 0 25 31 0 0 chrY 1112520 1112552 -23600527 + AT_rich Low_complexity Low_complexity 1 32 0 460 204 7 44 chrY 1112765 1112902 -23600177 + L1MC5 LINE L1 7801 7932 -29 310 189 57 132 chrY 1112922 1113081 -23599998 + L1ME2 LINE L1 5176 5322 -824 313 227 55 86 chrY 1113210 1113411 -23599668 + L1ME2 LINE L1 5674 5884 -280 184 257 14 54 chrY 1113880 1113954 -23599125 - MER5A DNA MER1_type -86 103 33 49 32 0 0 chrY 1114444 1114507 -23598572 + AT_rich Low_complexity Low_complexity 1 63 0 228 258 0 0 chrY 1114509 1114571 -23598508 + L1MC4 LINE L1 6642 6703 -1339 246 233 50 0 chrY 1114572 1114632 -23598447 + L1MC4 LINE L1 6653 6715 -1327 1765 144 37 0 chrY 1114736 1115006 -23598073 + AluSx SINE Alu 1 280 -32 836 185 60 0 chrY 1115036 1115187 -23597892 + FRAM SINE Alu 1 157 -19 1619 179 103 58 chrY 1115455 1115901 -23597178 + MER31B LTR ERV1 1 466 0 426 301 7 29 chrY 1116382 1116518 -23596561 + L2 LINE L2 3178 3310 -3 4890 154 32 35 chrY 1117004 1118184 -23594895 + L1PB4 LINE L1 4975 6156 0 438 250 11 109 chrY 1118776 1119052 -23594027 - L1MC5 LINE L1 -51 7910 7662 991 101 0 0 chrY 1119997 1120126 -23592953 - AluSq/x SINE Alu -184 129 1 2182 203 4 62 chrY 1120329 1120861 -23592218 + MLT1D LTR MaLR 3 503 -2 529 279 33 70 chrY 1122504 1122776 -23590303 - L1ME2 LINE L1 -16 6148 5887 576 237 0 0 chrY 1122795 1122892 -23590187 - MER2 DNA MER2_type -248 97 1 2246 273 82 26 chrY 1122892 1123772 -23589307 - L1ME2 LINE L1 -262 5902 5073 2098 129 0 0 chrY 1123772 1124067 -23589012 + AluSg SINE Alu 1 295 -15 2246 273 82 26 chrY 1124067 1125200 -23587879 - L1ME2 LINE L1 -1091 5073 3775 957 177 64 0 chrY 1125250 1125453 -23587626 - L1MC1 LINE L1 -5 6328 6113 1162 235 40 87 chrY 1125651 1126021 -23587058 + LTR49-int LTR ERV1 2068 2420 -3911 3666 192 8 39 chrY 1126029 1126765 -23586314 - MER50 LTR ERV1 -21 713 1 6446 171 15 13 chrY 1126765 1127909 -23585170 - MER50-int LTR ERV1 -8 7197 3899 18859 246 52 53 chrY 1128833 1135548 -23577531 - MER50-int LTR ERV1 -933 6158 1 1958 184 0 22 chrY 1135550 1135915 -23577164 - MER50 LTR ERV1 -24 710 354 401 105 0 0 chrY 1135912 1135969 -23577110 + AluSg/x SINE Alu 181 237 -65 * 1412 81 34 64 chrY 1135970 1136310 -23576769 + MER4A-int LTR ERV1 764 1149 -5609 372 119 0 0 chrY 1136310 1136369 -23576710 + (TG)n Simple_repeat Simple_repeat 2 60 0 4164 104 48 13 chrY 1136380 1137090 -23575989 + MER4A-int LTR ERV1 1761 2495 -4103 542 183 122 0 chrY 1137090 1137205 -23575874 - LTR8 LTR ERV1 -434 257 129 3008 125 79 21 chrY 1137205 1137910 -23575169 + MER4A-int LTR ERV1 2840 3677 -2921 14942 117 51 10 chrY 1137913 1140402 -23572677 + MER4A-int LTR ERV1 3837 6428 -170 2187 115 7 0 chrY 1140685 1140989 -23572090 - AluSq SINE Alu -2 311 6 1072 160 11 5 chrY 1142552 1142740 -23570339 + MER4A-int LTR ERV1 6405 6593 -5 480 177 21 10 chrY 1142751 1142847 -23570232 + MER4A LTR ERV1 1 97 -567 * 1591 176 3 27 chrY 1142844 1143202 -23569877 + MER4A LTR ERV1 257 664 0 897 212 42 19 chrY 1143202 1143534 -23569545 - L1M1 LINE L1 -2704 4861 2678 1112 300 61 28 chrY 1143602 1144221 -23568858 - L1MEc LINE L1 -3151 3064 2408 2045 128 3 0 chrY 1144221 1144511 -23568568 - AluY SINE Alu -20 291 1 1112 300 61 28 chrY 1144511 1144728 -23568351 - L1MEc LINE L1 -3807 2408 2200 861 292 95 23 chrY 1144898 1145508 -23567571 - L1MEc LINE L1 -4358 2038 1385 508 285 55 80 chrY 1145705 1146017 -23567062 - L1MEc LINE L1 -5090 1115 812 313 365 42 23 chrY 1146313 1146527 -23566552 - MIR SINE MIR -11 251 34 22 0 0 0 chrY 1147151 1147173 -23565906 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chrY 1148320 1148341 -23564738 + AT_rich Low_complexity Low_complexity 1 21 0 696 293 106 24 chrY 1148397 1148943 -23564136 + HAL1 LINE L1 659 1249 -1258 3432 154 41 0 chrY 1149080 1149666 -23563413 - MER4B LTR ERV1 0 610 1 1615 160 15 15 chrY 1149666 1149934 -23563145 - MER4B-int LTR ERV1 0 6758 6491 * 6934 151 31 67 chrY 1149926 1151436 -23561643 - MER4B-int LTR ERV1 -181 6577 5122 3769 195 7 28 chrY 1151436 1152180 -23560899 - MER50 LTR ERV1 -6 728 1 1660 142 11 36 chrY 1152180 1152659 -23560420 - MER50-int LTR ERV1 -8 7197 4041 626 137 0 0 chrY 1152670 1152765 -23560314 - MER50-int LTR ERV1 -3212 3546 3452 7373 168 43 51 chrY 1152772 1153690 -23559389 - MER50-int LTR ERV1 -3431 3327 2403 2207 112 0 0 chrY 1153690 1153984 -23559095 + AluY SINE Alu 1 294 -17 7373 168 43 51 chrY 1153984 1154064 -23559015 - MER50-int LTR ERV1 -4355 2403 2324 2167 120 0 0 chrY 1154064 1154365 -23558714 - AluSg SINE Alu -9 301 1 7373 168 43 51 chrY 1154365 1154889 -23558190 - MER50-int LTR ERV1 -4434 2324 1797 2137 124 0 3 chrY 1154889 1155195 -23557884 - AluSg SINE Alu -5 305 1 7373 168 43 51 chrY 1155195 1156739 -23556340 - MER50-int LTR ERV1 -4961 1797 180 3307 146 48 2 chrY 1156827 1157368 -23555711 - MER4B LTR ERV1 0 610 45 689 134 23 227 chrY 1157368 1157609 -23555470 - MLT2A2 LTR ERVL 0 444 287 281 296 162 51 chrY 1157636 1158278 -23554801 + HAL1 LINE L1 1792 2504 -3 507 279 92 85 chrY 1158866 1159149 -23553930 + L2 LINE L2 3029 3313 0 184 264 75 0 chrY 1159214 1159267 -23553812 + MIR SINE MIR 85 141 -121 1567 223 76 49 chrY 1159655 1159880 -23553199 + MLT1D LTR MaLR 4 222 -283 186 71 0 0 chrY 1159880 1159908 -23553171 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1567 223 76 49 chrY 1159908 1160171 -23552908 + MLT1D LTR MaLR 222 505 0 25 0 0 0 chrY 1160546 1160571 -23552508 + AT_rich Low_complexity Low_complexity 1 25 0 216 388 72 26 chrY 1160807 1161196 -23551883 - L2 LINE L2 -642 2672 2266 1635 178 165 8 chrY 1161353 1161723 -23551356 - MSTA LTR MaLR 0 428 1 8323 161 8 56 chrY 1161723 1162658 -23550421 - MSTA-int LTR MaLR 0 1580 755 2668 29 0 3 chrY 1162658 1162970 -23550109 + AluY SINE Alu 1 311 0 8323 161 8 56 chrY 1162970 1163690 -23549389 - MSTA-int LTR MaLR -825 755 3 1774 168 146 8 chrY 1163693 1164069 -23549010 - MSTA LTR MaLR 0 428 1 1337 288 65 17 chrY 1164069 1164549 -23548530 - LTR40a LTR ERVL -16 503 1 912 286 73 21 chrY 1164714 1165354 -23547725 - L1ME LINE L1 -519 5643 4961 1544 292 69 51 chrY 1165496 1167216 -23545863 - L1ME LINE L1 -1987 4159 2409 1308 266 58 76 chrY 1167220 1167942 -23545137 + L1ME3A LINE L1 5462 6170 0 26 0 0 0 chrY 1168376 1168402 -23544677 + AT_rich Low_complexity Low_complexity 1 26 0 3178 141 41 23 chrY 1168497 1169059 -23544020 + MER4B LTR ERV1 3 574 -36 22 70 0 0 chrY 1169669 1169712 -23543367 + AT_rich Low_complexity Low_complexity 1 43 0 250 381 15 8 chrY 1169775 1169909 -23543170 - MIR SINE MIR -47 215 81 2458 138 58 22 chrY 1170144 1170593 -23542486 - MER4C LTR ERV1 0 465 1 2411 75 0 3 chrY 1170904 1171212 -23541867 + AluY SINE Alu 1 307 -4 31 76 0 0 chrY 1171365 1171431 -23541648 + AT_rich Low_complexity Low_complexity 1 66 0 23 33 0 0 chrY 1171902 1171932 -23541147 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chrY 1172175 1172197 -23540882 + AT_rich Low_complexity Low_complexity 1 22 0 31 0 0 0 chrY 1172665 1172696 -23540383 + AT_rich Low_complexity Low_complexity 1 31 0 23 54 0 0 chrY 1172846 1172883 -23540196 + AT_rich Low_complexity Low_complexity 1 37 0 1458 277 123 11 chrY 1173095 1173658 -23539421 - MLT1E2 LTR MaLR 0 626 1 1877 171 3 0 chrY 1174090 1174399 -23538680 + AluSx SINE Alu 1 310 -2 1363 235 17 32 chrY 1174769 1174918 -23538161 + L1MB3 LINE L1 3392 3542 -2604 2014 152 91 15 chrY 1174918 1175314 -23537765 - MSTA LTR MaLR 0 428 3 7950 163 34 42 chrY 1175316 1176396 -23536683 - MSTA-int LTR MaLR 0 1580 516 213 39 0 0 chrY 1176396 1176422 -23536657 + (TTTTC)n Simple_repeat Simple_repeat 5 30 0 7950 163 34 42 chrY 1176422 1176932 -23536147 - MSTA-int LTR MaLR -1064 516 3 1812 149 79 82 chrY 1176934 1177172 -23535907 - MSTA LTR MaLR 0 428 190 2129 101 50 3 chrY 1177172 1177469 -23535610 - AluY SINE Alu 0 311 1 1812 149 79 82 chrY 1177469 1177659 -23535420 - MSTA LTR MaLR -238 190 1 1363 235 17 32 chrY 1177659 1177967 -23535112 + L1MB3 LINE L1 3544 3848 -2298 8487 216 15 2 chrY 1177977 1179533 -23533546 + L1PA13 LINE L1 9 1585 -5996 3616 210 15 17 chrY 1179536 1180673 -23532406 + L1PA13 LINE L1 2405 3560 -4024 * 9882 174 18 25 chrY 1180661 1183629 -23529450 + L1PA13 LINE L1 4648 7595 -6 4135 230 52 30 chrY 1183655 1183873 -23529206 + L1MB3 LINE L1 3876 4088 -2095 1718 225 10 20 chrY 1183873 1184273 -23528806 - MSTD LTR MaLR 0 396 1 4135 230 52 30 chrY 1184273 1184465 -23528614 + L1MB3 LINE L1 4088 4274 -1909 234 0 0 0 chrY 1184465 1184491 -23528588 + (CA)n Simple_repeat Simple_repeat 2 27 0 4135 230 52 30 chrY 1184491 1185455 -23527624 + L1MB3 LINE L1 4274 5216 -967 1073 248 39 19 chrY 1185455 1185818 -23527261 - MLT1A2 LTR MaLR -4 370 1 4135 230 52 30 chrY 1185818 1186714 -23526365 + L1MB3 LINE L1 5216 6183 0 180 329 13 13 chrY 1187822 1187898 -23525181 + MIR SINE MIR 187 262 0 572 383 82 21 chrY 1188351 1189180 -23523899 - L2 LINE L2 -213 3059 2180 394 299 57 53 chrY 1189278 1189579 -23523500 + L1M4 LINE L1 3684 3985 -2161 614 213 164 7 chrY 1189611 1189818 -23523261 - MER66A LTR ERV1 -257 341 97 1512 179 51 0 chrY 1189886 1190159 -23522920 - MER66A-int LTR ERV1 0 6676 6390 324 172 16 0 chrY 1190148 1190212 -23522867 - MER66A-int LTR ERV1 -1735 4941 4877 * 7545 196 107 86 chrY 1190214 1192732 -23520347 - MER66A-int LTR ERV1 -1758 4918 2348 13155 143 16 11 chrY 1192762 1195852 -23517227 - L1PA10 LINE L1 -3 6165 3044 10099 193 49 29 chrY 1195874 1197992 -23515087 - MER66A-int LTR ERV1 -4516 2160 1 1334 202 48 94 chrY 1197992 1198426 -23514653 - MER66A LTR ERV1 0 478 97 360 287 33 16 chrY 1198528 1198650 -23514429 + L1MC4 LINE L1 6580 6703 -1339 216 278 0 14 chrY 1198650 1198686 -23514393 + (TA)n Simple_repeat Simple_repeat 1 36 -35 1249 209 62 38 chrY 1198686 1199025 -23514054 + MER7A DNA MER2_type 1 345 -1 216 278 0 14 chrY 1199025 1199060 -23514019 + (TA)n Simple_repeat Simple_repeat 36 71 0 1179 176 0 39 chrY 1199140 1199373 -23513706 + Tigger5 DNA MER2_type 2085 2308 -15 192 40 0 0 chrY 1199384 1199409 -23513670 + (TC)n Simple_repeat Simple_repeat 2 26 0 247 276 0 0 chrY 1199410 1199468 -23513611 + (TATG)n Simple_repeat Simple_repeat 3 60 0 1951 119 0 17 chrY 1199716 1200054 -23513025 + AluY SINE Alu 1 311 0 29 0 0 0 chrY 1200092 1200121 -23512958 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chrY 1200350 1200374 -23512705 + AT_rich Low_complexity Low_complexity 1 24 0 651 259 95 69 chrY 1200482 1201176 -23511903 + L1MC/D LINE L1 3997 4708 -1438 459 215 117 78 chrY 1201220 1201425 -23511654 - L2 LINE L2 0 3313 3101 321 245 1 95 chrY 1201761 1201884 -23511195 + L1MC/D LINE L1 5476 5589 -540 591 211 37 0 chrY 1202064 1202173 -23510906 - FLAM_A SINE Alu -18 115 3 2827 297 128 38 chrY 1202358 1203909 -23509170 + L2 LINE L2 1171 2861 -453 529 290 26 59 chrY 1203968 1204240 -23508839 + L2 LINE L2 3051 3313 0 3464 215 96 17 chrY 1205385 1205745 -23507334 - L1MB7 LINE L1 -8 6176 5846 1788 198 40 0 chrY 1205745 1206094 -23506985 + MLT1A1 LTR MaLR 1 363 -2 3464 215 96 17 chrY 1206094 1206814 -23506265 - L1MB7 LINE L1 -338 5846 5028 435 19 0 0 chrY 1207822 1207874 -23505205 + (CA)n Simple_repeat Simple_repeat 1 52 0 378 315 129 18 chrY 1208296 1208636 -23504443 - L1ME4a LINE L1 -14 6107 5730 21 57 0 0 chrY 1209404 1209439 -23503640 + AT_rich Low_complexity Low_complexity 1 35 0 2201 90 0 0 chrY 1211746 1212034 -23501045 - AluY SINE Alu -23 288 1 1362 207 82 4 chrY 1212083 1212363 -23500716 + AluJb SINE Alu 1 302 -10 30 27 0 0 chrY 1212363 1212400 -23500679 + AT_rich Low_complexity Low_complexity 1 37 0 615 12 0 0 chrY 1212428 1212508 -23500571 + AluYa5/8 SINE Alu 231 310 -1 22 56 0 0 chrY 1213862 1213898 -23499181 + AT_rich Low_complexity Low_complexity 1 36 0 1590 261 76 32 chrY 1214199 1214767 -23498312 + MLT1E LTR MaLR 1 593 0 13461 170 25 47 chrY 1214923 1215127 -23497952 - L1PA13 LINE L1 0 6163 5956 2072 128 0 0 chrY 1215127 1215416 -23497663 - AluSg SINE Alu -21 289 1 13461 170 25 47 chrY 1215416 1216884 -23496195 - L1PA13 LINE L1 -207 5956 4458 2534 33 13 0 chrY 1216884 1217186 -23495893 - AluY SINE Alu 0 311 6 13461 170 25 47 chrY 1217186 1217280 -23495799 - L1PA13 LINE L1 -1705 4458 4363 2296 96 0 6 chrY 1217280 1217592 -23495487 - AluSx SINE Alu -2 310 1 13461 170 25 47 chrY 1217592 1218867 -23494212 - L1PA13 LINE L1 -1800 4363 3062 1832 180 0 0 chrY 1218867 1219178 -23493901 - AluSx SINE Alu -1 311 1 13461 170 25 47 chrY 1219178 1219198 -23493881 - L1PA13 LINE L1 -3101 3062 3043 1773 182 3 0 chrY 1219198 1219506 -23493573 - AluSx SINE Alu -3 309 1 13461 170 25 47 chrY 1219506 1220343 -23492736 - L1PA13 LINE L1 -3120 3043 2341 195 114 0 0 chrY 1220447 1220482 -23492597 + (A)n Simple_repeat Simple_repeat 1 35 0 774 297 36 5 chrY 1221306 1221528 -23491551 + MER69 DNA AcHobo 304 532 -694 449 200 30 20 chrY 1221534 1221634 -23491445 + MER69 DNA AcHobo 801 901 -1625 1382 207 121 12 chrY 1221644 1222141 -23490938 + MER69 DNA AcHobo 1708 2258 -268 4807 181 16 12 chrY 1222190 1222620 -23490459 - L1PA16 LINE L1 -8 6158 5731 5869 61 30 13 chrY 1222620 1223387 -23489692 - LTR17 LTR ERV1 0 780 1 4807 181 16 12 chrY 1223387 1223915 -23489164 - L1PA16 LINE L1 -435 5731 5199 421 217 19 83 chrY 1223915 1224072 -23489007 + MER69 DNA AcHobo 2371 2517 -9 194 366 78 35 chrY 1224093 1224235 -23488844 + MIR3 SINE MIR 33 180 -28 2192 188 49 79 chrY 1224241 1224897 -23488182 + MER92B LTR ERV1 1 636 0 395 289 157 38 chrY 1226274 1226433 -23486646 + MER5A DNA MER1_type 11 188 -1 1049 302 132 21 chrY 1226550 1226732 -23486347 - L2 LINE L2 -4 3309 3149 1549 219 7 47 chrY 1226732 1227138 -23485941 + MLT1B LTR MaLR 1 390 0 1049 302 132 21 chrY 1227138 1227567 -23485512 - L2 LINE L2 -164 3149 2621 472 110 14 0 chrY 1227713 1227786 -23485293 - MADE1 DNA Mariner -1 79 6 310 274 176 19 chrY 1227806 1228336 -23484743 - L1M4 LINE L1 -901 5245 4633 2356 84 0 7 chrY 1228338 1228648 -23484431 + AluY SINE Alu 1 308 -3 1609 142 76 44 chrY 1228698 1229042 -23484037 - THE1C LTR MaLR -20 355 1 345 304 104 55 chrY 1229337 1229538 -23483541 - MIR SINE MIR -3 259 49 21 36 0 0 chrY 1229647 1229675 -23483404 + AT_rich Low_complexity Low_complexity 1 28 0 468 0 0 0 chrY 1230709 1230761 -23482318 + (TA)n Simple_repeat Simple_repeat 2 53 0 1442 238 85 25 chrY 1230808 1231251 -23481828 - MLT2B1 LTR ERVL -40 461 4 16474 190 32 20 chrY 1231258 1234463 -23478616 - ERVL-B1 LTR ERVL -11 5753 2510 953 238 32 69 chrY 1234467 1234744 -23478335 - MLT2B1 LTR ERVL -253 267 1 408 273 187 16 chrY 1234940 1235127 -23477952 - MIR SINE MIR -5 257 39 315 248 134 13 chrY 1235740 1235889 -23477190 - MER58C DNA MER1_type -1 214 48 25 75 0 0 chrY 1236312 1236365 -23476714 + AT_rich Low_complexity Low_complexity 1 53 0 671 119 0 0 chrY 1236484 1236585 -23476494 - LTR12 LTR ERV1 -133 581 481 378 224 42 0 chrY 1236586 1236692 -23476387 - LTR30 LTR ERV1 -79 677 544 660 218 8 77 chrY 1236692 1236926 -23476153 - LTR12 LTR ERV1 -444 270 53 235 269 0 0 chrY 1236926 1236978 -23476101 - LTR30 LTR ERV1 -670 52 1 22 56 0 0 chrY 1237540 1237576 -23475503 + AT_rich Low_complexity Low_complexity 1 36 0 200 238 0 0 chrY 1237605 1237647 -23475432 + (TAA)n Simple_repeat Simple_repeat 2 43 0 243 252 129 49 chrY 1237647 1237933 -23475146 + L1M4 LINE L1 2207 2515 -3631 335 342 97 51 chrY 1238016 1238253 -23474826 + L1M4 LINE L1 -260 4294967283 -6293 262 149 21 0 chrY 1238602 1238649 -23474430 + L1M4 LINE L1 619 666 -5718 2567 234 68 40 chrY 1238650 1238810 -23474269 + L1M4 LINE L1 777 931 -5372 198 0 0 0 chrY 1238810 1238832 -23474247 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 2567 234 68 40 chrY 1238832 1239627 -23473452 + L1M4 LINE L1 931 1786 -4517 1208 256 36 31 chrY 1239627 1239980 -23473099 - MSTD LTR MaLR 0 396 44 405 0 0 0 chrY 1239980 1240025 -23473054 + (CA)n Simple_repeat Simple_repeat 2 46 0 1208 256 36 31 chrY 1240025 1240038 -23473041 - MSTD LTR MaLR -352 44 33 4830 208 44 12 chrY 1240038 1241107 -23471972 + L1MC3 LINE L1 6573 7675 -110 2062 115 0 26 chrY 1241111 1241415 -23471664 + AluSg SINE Alu 1 296 -14 205 184 0 0 chrY 1241779 1241817 -23471262 + (CATA)n Simple_repeat Simple_repeat 2 39 0 24 53 0 0 chrY 1242033 1242071 -23471008 + AT_rich Low_complexity Low_complexity 1 38 0 704 108 0 0 chrY 1242078 1242180 -23470899 - LTR12 LTR ERV1 -132 582 481 310 293 10 0 chrY 1242181 1242280 -23470799 - LTR30 LTR ERV1 -79 643 544 649 168 153 31 chrY 1242283 1242479 -23470600 - LTR12 LTR ERV1 -440 274 55 960 148 6 22 chrY 1242480 1242662 -23470417 - LTR12 LTR ERV1 -483 231 53 232 250 0 0 chrY 1242662 1242714 -23470365 - LTR30 LTR ERV1 -670 52 1 192 77 0 0 chrY 1244439 1244465 -23468614 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 21 57 0 0 chrY 1244689 1244724 -23468355 + AT_rich Low_complexity Low_complexity 1 35 0 543 241 103 0 chrY 1244766 1244911 -23468168 - MLT1A1 LTR MaLR 0 624 465 2198 86 3 16 chrY 1245195 1245499 -23467580 + AluY SINE Alu 12 311 0 1039 156 28 104 chrY 1245499 1245749 -23467330 - LOR1b LTR ERV1 -203 258 41 32 43 0 0 chrY 1246081 1246127 -23466952 + AT_rich Low_complexity Low_complexity 1 46 0 224 283 0 0 chrY 1246296 1246349 -23466730 - MIR SINE MIR -187 75 23 2179 113 3 6 chrY 1246349 1246660 -23466419 - AluSg SINE Alu 0 310 1 1586 202 35 11 chrY 1246756 1247103 -23465976 - MLT1A1 LTR MaLR -10 355 1 1837 109 0 0 chrY 1247422 1247670 -23465409 - AluSc SINE Alu -23 286 39 1340 291 85 6 chrY 1248189 1248659 -23464420 + L2 LINE L2 1780 2286 -1028 262 355 57 28 chrY 1248658 1248799 -23464280 + L2 LINE L2 3168 3312 -1 * 696 211 75 12 chrY 1249861 1250022 -23463057 + MER5B DNA MER1_type 2 172 -6 325 256 33 11 chrY 1250417 1250507 -23462572 + MER5A DNA MER1_type 96 187 -2 1802 207 56 25 chrY 1250584 1251028 -23462051 + LOR1b LTR ERV1 1 458 -3 21 36 0 0 chrY 1251491 1251519 -23461560 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chrY 1251645 1251666 -23461413 + AT_rich Low_complexity Low_complexity 1 21 0 313 321 38 46 chrY 1251675 1251915 -23461164 - L1MC/D LINE L1 -2019 5789 5552 1781 324 62 15 chrY 1252061 1252839 -23460240 - ERVL LTR ERVL -1533 4231 3418 622 331 65 20 chrY 1253208 1253456 -23459623 - LTR33 LTR ERVL -237 284 26 329 204 49 21 chrY 1253471 1253613 -23459466 + (TA)n Simple_repeat Simple_repeat 1 146 0 263 311 54 56 chrY 1253639 1254230 -23458849 - L1MC/D LINE L1 -1449 4697 4108 1303 219 50 14 chrY 1254360 1254638 -23458441 + AluJo SINE Alu 1 288 -24 2268 262 16 8 chrY 1255020 1255730 -23457349 - L1MC/D LINE L1 -2400 3746 3032 432 338 76 60 chrY 1255793 1256571 -23456508 + L1M4 LINE L1 3604 4393 -1753 10302 175 18 65 chrY 1256583 1258661 -23454418 + L1PA15-16 LINE L1 5 1986 -4863 262 100 0 0 chrY 1258746 1258786 -23454293 - L1PA7 LINE L1 -5 6149 6110 7068 229 29 29 chrY 1258888 1261449 -23451630 - L1MA9 LINE L1 -372 5940 3393 221 252 0 8 chrY 1261472 1261603 -23451476 + (TA)n Simple_repeat Simple_repeat 2 131 0 280 314 21 0 chrY 1261629 1261769 -23451310 + (TA)n Simple_repeat Simple_repeat 1 143 0 495 252 125 22 chrY 1261775 1262144 -23450935 - L1MC/D LINE L1 -3506 2640 2234 255 103 0 0 chrY 1262190 1262229 -23450850 + (CA)n Simple_repeat Simple_repeat 2 40 0 1162 229 41 25 chrY 1262233 1262547 -23450532 - L1MD1 LINE L1 -152 6090 5772 16853 194 40 27 chrY 1262555 1269401 -23443678 - L1M1 LINE L1 -743 6822 17 263 350 36 29 chrY 1269632 1269772 -23443307 + L2 LINE L2 3101 3241 -31 22 35 0 0 chrY 1270523 1270552 -23442527 + AT_rich Low_complexity Low_complexity 1 29 0 2210 96 0 39 chrY 1270700 1271012 -23442067 + AluY SINE Alu 1 300 -11 1971 134 0 10 chrY 1271065 1271355 -23441724 + AluSx SINE Alu 1 287 -25 589 160 0 19 chrY 1271275 1271381 -23441698 + AluY SINE Alu 207 310 -1 1573 209 0 20 chrY 1271471 1271772 -23441307 + AluJo SINE Alu 1 295 -17 1652 171 0 4 chrY 1272114 1272389 -23440690 - L1PB3 LINE L1 -2 6152 5879 2023 205 24 7 chrY 1272390 1272805 -23440274 - MER50 LTR ERV1 -23 711 290 1467 138 5 9 chrY 1272805 1273029 -23440050 - MER4A LTR ERV1 0 664 442 10069 123 43 23 chrY 1273029 1274873 -23438206 - MER4A-int LTR ERV1 -874 5724 3844 30340 107 9 25 chrY 1274873 1280656 -23432423 + L1PA7 LINE L1 1 5775 -701 2345 88 0 3 chrY 1280656 1280961 -23432118 + AluSc SINE Alu 4 307 -2 30340 107 9 25 chrY 1280961 1281653 -23431426 + L1PA7 LINE L1 5775 6476 0 1449 169 45 34 chrY 1281663 1282042 -23431037 - MER4A-int LTR ERV1 -2912 3686 3304 1655 144 70 3 chrY 1282070 1282458 -23430621 - MER4A-int LTR ERV1 -3448 3150 2737 1153 208 5 0 chrY 1282458 1282674 -23430405 + LTR8 LTR ERV1 1 217 -474 11253 119 118 47 chrY 1282680 1285016 -23428063 - MER4A-int LTR ERV1 -4095 2503 1 1866 121 6 22 chrY 1285030 1285370 -23427709 - MER4A LTR ERV1 -11 653 261 654 121 0 10 chrY 1285370 1285469 -23427610 - MER4A LTR ERV1 -566 98 1 1582 171 29 0 chrY 1285470 1285750 -23427329 - MER50 LTR ERV1 -446 288 1 1469 121 8 15 chrY 1285750 1286015 -23427064 - MER50-int LTR ERV1 -8 7197 6849 6895 116 29 38 chrY 1286015 1287166 -23425913 - MER50-int LTR ERV1 -1007 6198 5059 330 115 37 7 chrY 1287156 1287224 -23425855 - MER50-int LTR ERV1 -1499 4962 4381 * 1797 139 17 10 chrY 1287224 1287519 -23425560 + THE1A LTR MaLR 1 297 -58 1728 97 0 0 chrY 1287525 1287762 -23425317 + THE1A-int LTR MaLR 206 442 -1138 8016 213 38 18 chrY 1287768 1289539 -23423540 - MER50-int LTR ERV1 -2612 4593 2788 3844 156 32 47 chrY 1289543 1289676 -23423403 - MER50-int LTR ERV1 -5365 1840 1707 2090 102 11 7 chrY 1289676 1289986 -23423093 + AluSp SINE Alu 1 311 0 3844 156 32 47 chrY 1289986 1290577 -23422502 - MER50-int LTR ERV1 -5498 1707 1126 3109 177 20 6 chrY 1290599 1291511 -23421568 - MER50-int LTR ERV1 -6217 988 1 3682 170 33 35 chrY 1291511 1292247 -23420832 - MER50 LTR ERV1 0 734 1 380 167 0 0 chrY 1292247 1292307 -23420772 - L1PB3 LINE L1 -277 5877 5818 22 0 0 0 chrY 1292479 1292501 -23420578 + AT_rich Low_complexity Low_complexity 1 22 0 21 71 0 0 chrY 1292641 1292683 -23420396 + AT_rich Low_complexity Low_complexity 1 42 0 1352 123 44 0 chrY 1292904 1293107 -23419972 + MER30 DNA MER1_type 1 212 -18 1083 220 5 59 chrY 1293659 1294033 -23419046 - MER31B LTR ERV1 0 466 1 223 271 0 0 chrY 1295912 1295960 -23417119 + L2 LINE L2 3213 3260 -12 222 113 0 57 chrY 1296697 1296750 -23416329 + (TAAAA)n Simple_repeat Simple_repeat 1 50 0 497 116 0 0 chrY 1296766 1296835 -23416244 - AluS SINE Alu -15 294 226 1527 179 27 9 chrY 1296863 1297301 -23415778 - LTR27 LTR ERV1 0 501 91 448 207 0 0 chrY 1297272 1297354 -23415725 - LTR28 LTR ERV1 -938 82 1 * 25 65 0 0 chrY 1297561 1297607 -23415472 + AT_rich Low_complexity Low_complexity 1 46 0 492 114 81 0 chrY 1297825 1297974 -23415105 + (TA)n Simple_repeat Simple_repeat 1 161 0 230 137 77 18 chrY 1298016 1298184 -23414895 + (TA)n Simple_repeat Simple_repeat 1 178 0 2177 236 69 20 chrY 1298379 1298984 -23414095 - MER99 DNA DNA -2 826 192 39 92 0 0 chrY 1299327 1299436 -23413643 + AT_rich Low_complexity Low_complexity 1 109 0 366 284 63 0 chrY 1299669 1299764 -23413315 - MER99 DNA DNA -727 101 1 368 289 47 23 chrY 1299954 1300082 -23412997 - MIR SINE MIR -10 252 122 624 298 18 11 chrY 1301360 1301642 -23411437 - L1ME3A LINE L1 -219 5951 5668 1683 198 15 53 chrY 1301916 1302346 -23410733 + MLT2D LTR ERVL 10 520 0 949 296 81 59 chrY 1302454 1303215 -23409864 - L1ME3A LINE L1 -905 5241 4498 2033 95 21 7 chrY 1303215 1303532 -23409547 + AluY SINE Alu 1 311 0 949 296 81 59 chrY 1303532 1303766 -23409313 - L1ME3A LINE L1 -1648 4498 4271 1770 199 3 0 chrY 1303766 1304068 -23409011 + AluJb SINE Alu 1 303 -9 949 296 81 59 chrY 1304068 1304112 -23408967 - L1ME3A LINE L1 -1875 4271 4229 2409 86 0 0 chrY 1304112 1304416 -23408663 + AluSq SINE Alu 1 304 -9 949 296 81 59 chrY 1304416 1304689 -23408390 - L1ME3A LINE L1 -1917 4229 3898 40 72 0 18 chrY 1304702 1304771 -23408308 + AT_rich Low_complexity Low_complexity 1 69 -40 1359 186 93 11 chrY 1304771 1305040 -23408039 + AluJb SINE Alu 1 291 -21 40 72 0 18 chrY 1305040 1305081 -23407998 + AT_rich Low_complexity Low_complexity 69 109 0 663 269 5 46 chrY 1305399 1305615 -23407464 - MLT1E1 LTR MaLR 0 654 448 2295 153 135 41 chrY 1305678 1306195 -23406884 + LTR49 LTR ERV1 1 566 -29 1230 228 118 57 chrY 1306292 1306984 -23406095 - MER61E LTR ERV1 -2 777 1 431 153 266 16 chrY 1306984 1307108 -23405971 - MER4C LTR ERV1 -20 445 291 1422 170 50 50 chrY 1307260 1307602 -23405477 - MER4A LTR ERV1 -322 342 1 2263 175 70 52 chrY 1307765 1308250 -23404829 + LTR26B LTR ERV1 1 494 -37 1924 160 16 0 chrY 1308537 1308844 -23404235 - AluSx SINE Alu 0 312 1 649 118 0 11 chrY 1308946 1309036 -23404043 - LTR35 LTR ERV1 0 618 530 298 192 0 0 chrY 1309036 1309088 -23403991 - MLT2A2 LTR ERVL 0 453 402 249 177 32 0 chrY 1309095 1309157 -23403922 + (TA)n Simple_repeat Simple_repeat 1 64 0 320 305 0 11 chrY 1309157 1309252 -23403827 + L1MC4 LINE L1 6610 6703 -1339 306 303 22 0 chrY 1309269 1309358 -23403721 + L1MC4 LINE L1 6615 6705 -1337 * 309 318 0 0 chrY 1309300 1309388 -23403691 - L1MC4 LINE L1 -1341 6701 6614 303 247 0 62 chrY 1309399 1309496 -23403583 + L1MC4 LINE L1 6613 6703 -1339 487 132 46 7 chrY 1309496 1309648 -23403431 + (TA)n Simple_repeat Simple_repeat 2 159 0 3492 226 97 2 chrY 1309857 1310707 -23402372 + L1PA12 LINE L1 656 1585 -5996 2751 192 25 17 chrY 1310710 1311344 -23401735 + L1PA12 LINE L1 2405 3043 -4531 1174 81 46 12 chrY 1311564 1311769 -23401310 + AluY SINE Alu 111 311 0 264 235 67 0 chrY 1311801 1311920 -23401159 - L1M4 LINE L1 -1720 4426 4300 1635 199 14 0 chrY 1312003 1312300 -23400779 + AluJb SINE Alu 1 301 -11 1939 143 0 7 chrY 1312343 1312636 -23400443 + AluSq SINE Alu 1 291 -22 264 319 90 90 chrY 1313314 1313593 -23399486 + L2 LINE L2 3029 3307 -6 184 264 75 0 chrY 1313663 1313716 -23399363 + MIR SINE MIR 85 141 -121 363 269 19 10 chrY 1314104 1314208 -23398871 + MLT1D LTR MaLR 4 108 -397 268 136 58 19 chrY 1314350 1314505 -23398574 + (TTATA)n Simple_repeat Simple_repeat 5 165 0 40 37 0 0 chrY 1314515 1314569 -23398510 + AT_rich Low_complexity Low_complexity 1 54 0 368 127 58 17 chrY 1314569 1314742 -23398337 + (TA)n Simple_repeat Simple_repeat 1 180 0 1996 229 20 34 chrY 1314791 1315319 -23397760 - MLT2B3 LTR ERVL -44 508 1 366 159 16 0 chrY 1315319 1315382 -23397697 - LTR35 LTR ERV1 -84 534 471 365 227 83 41 chrY 1315404 1315576 -23397503 - LTR43 LTR ERV1 -163 516 184 2381 154 127 59 chrY 1315619 1316177 -23396902 - LTR4 LTR ERV1 0 596 1 782 206 52 16 chrY 1316277 1316471 -23396608 - PABL_B LTR ERV1 0 667 467 233 304 54 48 chrY 1316549 1316717 -23396362 - PABL_B LTR ERV1 -498 169 1 248 316 55 70 chrY 1316929 1317115 -23395964 + MIR SINE MIR 18 206 -56 22 35 0 0 chrY 1317281 1317310 -23395769 + AT_rich Low_complexity Low_complexity 1 29 0 580 267 127 38 chrY 1317466 1317702 -23395377 + MIR SINE MIR 3 259 -3 417 308 108 23 chrY 1318143 1318357 -23394722 + MIR SINE MIR 31 262 0 369 320 14 20 chrY 1318383 1318530 -23394549 + MLT1L LTR MaLR 434 579 -36 323 333 8 0 chrY 1318623 1318740 -23394339 - L1MC4a LINE L1 -1922 5886 5769 817 271 20 10 chrY 1318741 1318944 -23394135 - MLT1E1 LTR MaLR 0 654 450 265 259 48 24 chrY 1319056 1319222 -23393857 - L1ME4a LINE L1 -68 6053 5884 1458 184 25 179 chrY 1319327 1319853 -23393226 - MER21A LTR ERV1 -486 445 1 2159 214 65 34 chrY 1319853 1320265 -23392814 - L1MB7 LINE L1 -281 6401 6003 198 71 0 0 chrY 1320265 1320293 -23392786 + (TTA)n Simple_repeat Simple_repeat 2 29 0 2159 214 65 34 chrY 1320293 1320619 -23392460 - L1MB7 LINE L1 -679 6003 5639 2484 60 0 28 chrY 1320619 1320937 -23392142 + AluY SINE Alu 1 309 -2 2159 214 65 34 chrY 1320937 1321115 -23391964 - L1MB7 LINE L1 -1043 5639 5468 2595 266 69 8 chrY 1321121 1322182 -23390897 - L1MB7 LINE L1 -1225 5419 4295 3817 155 65 9 chrY 1322191 1322863 -23390216 - MER50 LTR ERV1 -24 710 1 316 231 154 28 chrY 1322865 1323008 -23390071 - L1MB7 LINE L1 -2355 4289 4129 * 348 287 29 0 chrY 1323004 1323178 -23389901 - L1MB7 LINE L1 -3203 3441 3263 * 2457 253 57 44 chrY 1323175 1323950 -23389129 - L1MB7 LINE L1 -5750 792 8 789 208 13 0 chrY 1324016 1324170 -23388909 - AluSg/x SINE Alu 0 310 155 646 275 66 19 chrY 1324225 1324554 -23388525 - MLT1E1 LTR MaLR -262 392 1 44 20 0 0 chrY 1324579 1324630 -23388449 + AT_rich Low_complexity Low_complexity 1 51 0 245 280 70 0 chrY 1324630 1324730 -23388349 - L1ME LINE L1 -459 5662 5556 667 270 79 21 chrY 1324734 1325082 -23387997 - MSTD LTR MaLR -3 393 4 260 238 25 25 chrY 1325141 1325221 -23387858 - MIR SINE MIR 0 262 183 1887 140 25 69 chrY 1325282 1325335 -23387744 + THE1C LTR MaLR 1 55 -320 2768 136 71 2 chrY 1325335 1325813 -23387266 - MER9 LTR ERVK 0 511 1 1887 140 25 69 chrY 1325813 1326151 -23386928 + THE1C LTR MaLR 55 375 0 2211 98 3 7 chrY 1326460 1326756 -23386323 - AluSp SINE Alu -18 295 1 3177 255 75 105 chrY 1327252 1328925 -23384154 + L1MCa LINE L1 1 1779 -4785 1359 201 21 4 chrY 1328929 1329208 -23383871 + L1MC3 LINE L1 7304 7587 -198 2420 47 7 0 chrY 1329208 1329504 -23383575 - AluY SINE Alu -13 298 1 3160 286 108 38 chrY 1329521 1331687 -23381392 + L1M4b LINE L1 6 2331 -4628 934 136 32 1 chrY 1331704 1331887 -23381192 - MER61E LTR ERV1 -20 774 340 243 212 0 106 chrY 1331999 1332065 -23381014 - MER61E LTR ERV1 -412 157 99 * 258 214 34 90 chrY 1332062 1332151 -23380928 - LTR25 LTR ERV1 -431 363 280 29 28 0 0 chrY 1332582 1332618 -23380461 + AT_rich Low_complexity Low_complexity 1 36 0 22 35 0 0 chrY 1332654 1332683 -23380396 + AT_rich Low_complexity Low_complexity 1 29 0 2373 249 72 41 chrY 1332687 1333701 -23379378 + L1M4b LINE L1 2623 3604 -3353 2151 131 0 0 chrY 1333701 1333999 -23379080 + AluSg SINE Alu 1 298 -12 2373 249 72 41 chrY 1333999 1334089 -23378990 + L1M4b LINE L1 3604 3690 -3267 1337 146 22 22 chrY 1334089 1334364 -23378715 + L1MA2 LINE L1 6030 6304 0 2373 249 72 41 chrY 1334364 1334746 -23378333 + L1M4b LINE L1 3690 4105 -2852 618 189 0 0 chrY 1334755 1334866 -23378213 + FLAM_C SINE Alu 9 119 -24 189 107 0 0 chrY 1334866 1334894 -23378185 + (TAAA)n Simple_repeat Simple_repeat 3 30 0 2226 253 20 68 chrY 1334926 1335854 -23377225 + L1M4b LINE L1 4116 4999 -1958 7176 243 52 5 chrY 1335857 1337544 -23375535 - ERVL LTR ERVL -2149 3615 1851 528 254 18 0 chrY 1337524 1337638 -23375441 - ERVL LTR ERVL -4587 1177 1062 * 76 65 0 0 chrY 1337638 1337777 -23375302 + AT_rich Low_complexity Low_complexity 1 139 0 503 301 11 22 chrY 1337809 1337992 -23375087 - ERVL LTR ERVL -4721 1043 863 1271 229 80 6 chrY 1338014 1338328 -23374751 - MLT2C1 LTR ERVL -56 341 5 2091 211 45 48 chrY 1338333 1339034 -23374045 + L1MB8 LINE L1 5674 6174 -4 296 280 20 0 chrY 1340001 1340101 -23372978 - L1M4 LINE L1 -2218 3928 3827 398 267 5 82 chrY 1340158 1340353 -23372726 - L1MEc LINE L1 -4819 1396 1217 1359 249 76 83 chrY 1340371 1340614 -23372465 + MLT1F1 LTR MaLR 1 244 -323 3691 167 110 17 chrY 1340614 1341370 -23371709 - LTR1B LTR ERV1 0 826 1 1359 249 76 83 chrY 1341370 1341668 -23371411 + MLT1F1 LTR MaLR 244 563 -4 561 261 100 49 chrY 1341691 1341978 -23371101 - L1MEc LINE L1 -4872 1357 1069 1620 213 14 19 chrY 1341978 1342339 -23370740 - MLT1A1 LTR MaLR 0 365 7 924 125 17 10 chrY 1342363 1342661 -23370418 + (TA)n Simple_repeat Simple_repeat 1 300 0 1302 112 6 0 chrY 1342664 1342843 -23370236 - AluSg/x SINE Alu -20 289 110 2327 261 67 18 chrY 1342908 1343762 -23369317 - L1MEc LINE L1 -4968 912 45 21 36 0 0 chrY 1343781 1343809 -23369270 + AT_rich Low_complexity Low_complexity 1 28 0 206 324 127 12 chrY 1343957 1344130 -23368949 - L2 LINE L2 0 3313 3121 629 58 0 0 chrY 1344288 1344374 -23368705 + L1MA1 LINE L1 6213 6298 -4 252 174 0 0 chrY 1344434 1344480 -23368599 - MLT2B2 LTR ERVL -6 509 464 1809 226 116 9 chrY 1344480 1344927 -23368152 - MLT2B2 LTR ERVL -20 495 1 11702 189 9 43 chrY 1344929 1346341 -23366738 - ERVL-B2 LTR ERVL -9 5755 4297 2020 222 21 2 chrY 1346341 1346765 -23366314 - MSTB1 LTR MaLR 0 432 1 11702 189 9 43 chrY 1346765 1347527 -23365552 - ERVL-B2 LTR ERVL -1467 4297 3662 2123 215 24 5 chrY 1347527 1347945 -23365134 - MSTB LTR MaLR 0 426 1 11702 189 9 43 chrY 1347945 1348098 -23364981 - ERVL-B2 LTR ERVL -2102 3662 3505 6312 158 34 3 chrY 1348195 1349602 -23363477 + L1MA1 LINE L1 4832 6302 0 212 316 13 0 chrY 1350295 1350374 -23362705 + MIR SINE MIR 181 260 -2 33 43 0 0 chrY 1350502 1350549 -23362530 + AT_rich Low_complexity Low_complexity 1 47 0 1151 108 11 5 chrY 1350973 1351159 -23361920 - L1MA6 LINE L1 0 6300 6114 31 26 0 0 chrY 1351556 1351594 -23361485 + AT_rich Low_complexity Low_complexity 1 38 0 2921 220 54 18 chrY 1351606 1352346 -23360733 - L1MC3 LINE L1 -1635 6150 5384 185 0 40 0 chrY 1352828 1352853 -23360226 + (TA)n Simple_repeat Simple_repeat 1 26 0 1424 251 123 34 chrY 1352879 1353350 -23359729 + MLT1E LTR MaLR 8 520 -73 355 286 87 43 chrY 1353513 1353698 -23359381 + L2 LINE L2 3093 3285 -28 511 315 76 21 chrY 1353930 1354168 -23358911 + MIR SINE MIR 5 255 -7 318 357 0 9 chrY 1354214 1354326 -23358753 + MIR SINE MIR 2 112 -150 25 75 0 0 chrY 1354362 1354415 -23358664 + AT_rich Low_complexity Low_complexity 1 53 0 6596 84 2 3 chrY 1354440 1356103 -23356976 - L1PA8 LINE L1 -3 6169 4510 251 274 84 11 chrY 1356104 1356199 -23356880 + MIR SINE MIR 159 260 -2 26 30 0 0 chrY 1358186 1358219 -23354860 + AT_rich Low_complexity Low_complexity 1 33 0 318 301 21 21 chrY 1358801 1358894 -23354185 + L2 LINE L2 3102 3194 -78 3612 164 33 45 chrY 1360687 1360925 -23352154 - LTR62 LTR ERVK -4 715 476 2478 53 0 0 chrY 1360925 1361226 -23351853 + AluY SINE Alu 1 301 -10 3612 164 33 45 chrY 1361226 1361705 -23351374 - LTR62 LTR ERVK -243 476 6 31 44 0 0 chrY 1362372 1362417 -23350662 + AT_rich Low_complexity Low_complexity 1 45 0 323 228 43 0 chrY 1362791 1362883 -23350196 - L1ME LINE L1 -354 5808 5713 6986 224 64 1 chrY 1363024 1364140 -23348939 + L1MA1 LINE L1 584 1819 -5746 360 0 0 0 chrY 1364140 1364180 -23348899 + (GA)n Simple_repeat Simple_repeat 1 40 0 6986 224 64 1 chrY 1364180 1364560 -23348519 + L1MA1 LINE L1 1819 2174 -5391 4439 184 59 7 chrY 1364918 1365052 -23348027 + L1M1 LINE L1 1615 1741 -5824 360 0 0 0 chrY 1365052 1365092 -23347987 + (GA)n Simple_repeat Simple_repeat 1 40 0 4439 184 59 7 chrY 1365092 1365857 -23347222 + L1M1 LINE L1 1741 2561 -5004 12782 216 22 17 chrY 1365866 1369403 -23343676 + L1PB1 LINE L1 3 3520 -3347 246 32 0 0 chrY 1369403 1369434 -23343645 + (CA)n Simple_repeat Simple_repeat 2 32 0 12782 216 22 17 chrY 1369434 1370048 -23343031 + L1PB1 LINE L1 3520 4129 -2738 1848 164 4 0 chrY 1370048 1370328 -23342751 + AluSx SINE Alu 1 281 -31 350 21 21 0 chrY 1370331 1370378 -23342701 + (TAAAA)n Simple_repeat Simple_repeat 2 49 0 12782 216 22 17 chrY 1370378 1370620 -23342459 + L1PB1 LINE L1 4130 4369 -2498 2111 108 0 30 chrY 1370620 1370925 -23342154 + AluSc SINE Alu 6 301 -8 12782 216 22 17 chrY 1370925 1373055 -23340024 + L1PB1 LINE L1 4369 6859 -8 297 0 0 0 chrY 1373064 1373097 -23339982 + (TG)n Simple_repeat Simple_repeat 2 34 0 13100 183 31 17 chrY 1373176 1378187 -23334892 + L1MA1 LINE L1 2513 7721 0 24 32 0 0 chrY 1378187 1378218 -23334861 + AT_rich Low_complexity Low_complexity 1 31 0 1868 131 29 0 chrY 1378308 1378609 -23334470 - AluSx SINE Alu 0 309 1 213 192 96 55 chrY 1378780 1378853 -23334226 + L2 LINE L2 3150 3225 -88 3922 154 52 42 chrY 1379685 1381048 -23332031 + pTR5 LTR ERV1 741 2438 0 273 250 12 24 chrY 1381231 1381314 -23331765 - Charlie4a DNA MER1_type -1 507 426 515 186 0 39 chrY 1381314 1381416 -23331663 + MER4A LTR ERV1 1 98 -566 1479 142 13 120 chrY 1381416 1381803 -23331276 + MER4A LTR ERV1 261 664 0 2486 125 95 43 chrY 1381806 1382421 -23330658 + MER4A-int LTR ERV1 1 812 -5786 1163 266 85 3 chrY 1382523 1382842 -23330237 + MER4A-int LTR ERV1 1860 2204 -4127 5096 146 79 30 chrY 1382862 1383843 -23329236 + MER4A-int LTR ERV1 189 1185 -5573 3679 99 101 18 chrY 1383824 1384500 -23328579 + MER4A-int LTR ERV1 1764 2495 -4103 * 913 175 218 0 chrY 1384500 1384711 -23328368 - LTR8 LTR ERV1 -434 257 1 3374 167 74 25 chrY 1384717 1385597 -23327482 + MER4A-int LTR ERV1 2759 3681 -2917 * 13225 121 53 71 chrY 1385596 1388405 -23324674 + MER4A-int LTR ERV1 3837 6596 -2 602 111 10 20 chrY 1388432 1388531 -23324548 + MER4A LTR ERV1 1 98 -566 1614 144 158 78 chrY 1388531 1388905 -23324174 + MER4A LTR ERV1 261 664 0 921 256 96 23 chrY 1388910 1389304 -23323775 - Charlie4a DNA MER1_type -84 424 2 6070 118 43 12 chrY 1390055 1391074 -23322005 + L1MA2 LINE L1 5254 6304 0 2523 233 18 11 chrY 1392506 1392546 -23320533 - MLT2B3 LTR ERVL 0 554 516 240 35 0 0 chrY 1392546 1392575 -23320504 + (CATA)n Simple_repeat Simple_repeat 2 30 0 2523 233 18 11 chrY 1392575 1393084 -23319995 - MLT2B3 LTR ERVL -38 516 1 5024 171 10 7 chrY 1393886 1394288 -23318791 + L1PA15 LINE L1 5090 5489 -676 189 74 0 0 chrY 1394288 1394315 -23318764 + (CAAAA)n Simple_repeat Simple_repeat 3 29 0 5024 171 10 7 chrY 1394315 1394986 -23318093 + L1PA15 LINE L1 5489 6163 -2 2678 223 26 23 chrY 1395093 1395739 -23317340 + MER82 DNA MER2_type 2 649 -4 180 176 0 0 chrY 1395813 1395847 -23317232 + GA-rich Low_complexity Low_complexity 1 34 0 633 161 0 18 chrY 1395966 1396078 -23317001 - FLAM_C SINE Alu -12 131 22 37 23 0 0 chrY 1396664 1396708 -23316371 + AT_rich Low_complexity Low_complexity 1 44 0 228 214 0 57 chrY 1396708 1396778 -23316301 + L1M4 LINE L1 4749 4814 -1332 23 86 0 0 chrY 1396903 1396961 -23316118 + AT_rich Low_complexity Low_complexity 1 58 0 374 316 43 0 chrY 1397599 1397716 -23315363 + MIR SINE MIR 40 161 -101 679 235 31 133 chrY 1397725 1398108 -23314971 + MLT1B LTR MaLR 18 386 -4 256 327 50 0 chrY 1398110 1398211 -23314868 + MIR SINE MIR 154 259 -3 327 347 45 23 chrY 1398318 1398494 -23314585 + MIR SINE MIR 1 180 -82 2160 52 7 17 chrY 1398562 1398900 -23314179 + AluY SINE Alu 1 335 0 848 320 68 10 chrY 1398986 1399474 -23313605 + Charlie7 DNA MER1_type 43 558 -2054 7849 158 18 41 chrY 1399520 1401013 -23312066 - Tigger1 DNA MER2_type -1 2417 959 3931 180 10 1 chrY 1401030 1401701 -23311378 - Tigger1 DNA MER2_type -1741 677 1 189 147 0 0 chrY 1401887 1401921 -23311158 + (TA)n Simple_repeat Simple_repeat 1 34 0 432 237 54 0 chrY 1402146 1402239 -23310840 + L1MC1 LINE L1 19 116 -6310 * 7101 238 44 44 chrY 1402215 1403096 -23309983 + L1MC1 LINE L1 2853 3733 -2880 2220 97 10 3 chrY 1403096 1403404 -23309675 + AluSx SINE Alu 1 310 -2 7101 238 44 44 chrY 1403404 1404467 -23308612 + L1MC1 LINE L1 3733 4795 -1818 1543 198 52 25 chrY 1404467 1404649 -23308430 + THE1C LTR MaLR 1 177 -198 234 62 0 0 chrY 1404649 1404681 -23308398 + (CA)n Simple_repeat Simple_repeat 2 33 0 1543 198 52 25 chrY 1404681 1404862 -23308217 + THE1C LTR MaLR 177 374 -1 7101 238 44 44 chrY 1404862 1406666 -23306413 + L1MC1 LINE L1 4795 6596 -17 13353 212 36 13 chrY 1406773 1407126 -23305953 + L1PB1 LINE L1 1326 1669 -5198 207 0 0 0 chrY 1407126 1407149 -23305930 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 13353 212 36 13 chrY 1407149 1407577 -23305502 + L1PB1 LINE L1 1669 2086 -4781 274 81 0 0 chrY 1407577 1407614 -23305465 - MADE1 DNA Mariner -41 39 3 13353 212 36 13 chrY 1407614 1409730 -23303349 + L1PB1 LINE L1 2086 4151 -2716 267 54 0 0 chrY 1409730 1409767 -23303312 + (CAA)n Simple_repeat Simple_repeat 2 38 0 13353 212 36 13 chrY 1409767 1411598 -23301481 + L1PB1 LINE L1 4151 6291 -576 4501 107 140 26 chrY 1411598 1412339 -23300740 - LTR12 LTR ERV1 0 826 1 13353 212 36 13 chrY 1412339 1412512 -23300567 + L1PB1 LINE L1 6291 6458 -409 360 111 0 0 chrY 1412514 1412568 -23300511 + (TA)n Simple_repeat Simple_repeat 2 55 0 2207 144 14 0 chrY 1412568 1412928 -23300151 + L1PB1 LINE L1 6502 6866 -1 1933 95 0 4 chrY 1413115 1413368 -23299711 - AluY SINE Alu -16 295 44 25 31 0 0 chrY 1413538 1413570 -23299509 + AT_rich Low_complexity Low_complexity 1 32 0 733 248 0 43 chrY 1413741 1413951 -23299128 - L1PA16 LINE L1 -5 6161 5961 1603 192 13 6 chrY 1413951 1414264 -23298815 - L1PA15 LINE L1 0 6816 6502 1012 225 120 0 chrY 1414298 1414574 -23298505 - L1PA15 LINE L1 -1415 5382 5074 1957 190 80 3 chrY 1414583 1414972 -23298107 + MSTA LTR MaLR 10 428 0 7358 230 15 9 chrY 1414972 1416609 -23296470 + MSTA-int LTR MaLR 1 1648 -3 1964 200 56 12 chrY 1416612 1417022 -23296057 + MSTA LTR MaLR 1 428 0 10821 224 25 31 chrY 1417022 1420665 -23292414 - L1PA15 LINE L1 -1720 5077 1459 1307 257 51 60 chrY 1421207 1421674 -23291405 + L1MCa LINE L1 47 509 -5917 995 149 13 53 chrY 1421677 1421878 -23291201 + THE1B LTR MaLR 193 364 0 9194 145 13 35 chrY 1421881 1423458 -23289621 + THE1C-int LTR MaLR 4 1544 -36 2643 211 58 26 chrY 1423458 1423496 -23289583 + LTR39 LTR ERV1 115 150 -633 1460 186 72 31 chrY 1423496 1423856 -23289223 + THE1C LTR MaLR 1 375 0 2643 211 58 26 chrY 1423856 1424437 -23288642 + LTR39 LTR ERV1 150 754 -29 3786 186 19 8 chrY 1424444 1425148 -23287931 - MER50 LTR ERV1 -23 711 1 2057 120 13 13 chrY 1425148 1425465 -23287614 - MER50-int LTR ERV1 -8 7197 6881 * 19817 152 29 29 chrY 1425462 1425839 -23287240 - MER50-int LTR ERV1 -1177 6028 5652 189 265 61 0 chrY 1425839 1425888 -23287191 + MIR SINE MIR 69 120 -88 19817 152 29 29 chrY 1425888 1430088 -23282991 - MER50-int LTR ERV1 -1553 5652 446 13193 145 10 2 chrY 1430088 1432288 -23280791 + L1PA10 LINE L1 3082 5299 -847 1418 163 11 65 chrY 1432301 1432577 -23280502 + AluSx SINE Alu 38 298 -14 5690 102 8 19 chrY 1432578 1433419 -23279660 + L1PA10 LINE L1 5320 6151 -17 857 97 15 30 chrY 1433419 1433553 -23279526 - MER50-int LTR ERV1 -6311 894 763 290 105 0 0 chrY 1433567 1433605 -23279474 + MER50-int LTR ERV1 757 794 -6411 * 4840 147 8 4 chrY 1433604 1434359 -23278720 - MER50-int LTR ERV1 -6447 758 1 3543 153 45 53 chrY 1434359 1434629 -23278450 - MER50 LTR ERV1 0 734 463 2344 82 7 0 chrY 1434629 1434934 -23278145 - AluSc SINE Alu -2 307 1 3543 153 45 53 chrY 1434934 1435403 -23277676 - MER50 LTR ERV1 -271 463 1 23 54 0 0 chrY 1435516 1435553 -23277526 + AT_rich Low_complexity Low_complexity 1 37 0 22 35 0 0 chrY 1436406 1436435 -23276644 + AT_rich Low_complexity Low_complexity 1 29 0 1992 205 123 91 chrY 1436731 1437482 -23275597 + LTR48 LTR ERV1 13 787 0 24 67 0 0 chrY 1438708 1438753 -23274326 + AT_rich Low_complexity Low_complexity 1 45 0 1982 86 82 4 chrY 1438965 1439244 -23273835 - AluSq SINE Alu -12 301 1 858 246 20 106 chrY 1440205 1440600 -23272479 + MLT1A1 LTR MaLR 5 365 0 30 0 0 0 chrY 1441530 1441560 -23271519 + AT_rich Low_complexity Low_complexity 1 30 0 29 28 0 0 chrY 1442307 1442343 -23270736 + AT_rich Low_complexity Low_complexity 1 36 0 187 283 0 19 chrY 1443281 1443334 -23269745 + MIR SINE MIR 161 212 -50 280 275 68 2 chrY 1443853 1443956 -23269123 - MIR SINE MIR -65 143 36 3372 172 47 37 chrY 1444049 1444099 -23268980 - L1MC2 LINE L1 -10 6614 6566 2250 69 0 33 chrY 1444099 1444403 -23268676 + AluY SINE Alu 1 294 -17 3372 172 47 37 chrY 1444403 1445101 -23267978 - L1MC2 LINE L1 -58 6566 5859 * 6973 208 12 6 chrY 1445085 1447586 -23265493 + L1PA16 LINE L1 3658 6166 0 2604 246 76 14 chrY 1447586 1448898 -23264181 - L1MC2 LINE L1 -750 5676 4477 1824 248 27 8 chrY 1448891 1449701 -23263378 - L1MC2 LINE L1 -3353 3073 2247 * 318 271 82 29 chrY 1449738 1449908 -23263171 + L1MCa LINE L1 2051 2229 -4197 369 243 19 0 chrY 1450081 1450184 -23262895 - L1MA10 LINE L1 -2 6332 6228 399 322 29 21 chrY 1450192 1450498 -23262581 - L1M4 LINE L1 -2324 3822 3519 21 36 0 0 chrY 1451036 1451064 -23262015 + AT_rich Low_complexity Low_complexity 1 28 0 32 0 0 0 chrY 1451515 1451547 -23261532 + AT_rich Low_complexity Low_complexity 1 32 0 9202 240 81 21 chrY 1451547 1455719 -23257360 - L1PA16 LINE L1 -22 6144 1706 599 173 10 0 chrY 1455739 1455843 -23257236 - U6 snRNA snRNA -2 105 1 244 323 71 32 chrY 1456102 1456257 -23256822 - MIR SINE MIR -10 252 92 22 0 0 0 chrY 1456759 1456781 -23256298 + AT_rich Low_complexity Low_complexity 1 22 0 738 295 91 21 chrY 1457538 1457779 -23255300 - MIR SINE MIR 0 262 5 21 0 0 0 chrY 1458743 1458764 -23254315 + AT_rich Low_complexity Low_complexity 1 21 0 474 260 48 57 chrY 1458945 1459172 -23253907 + HAL1 LINE L1 2283 2507 0 16497 170 19 17 chrY 1459195 1462168 -23250911 + L1PA15-16 LINE L1 1 2979 -3870 2201 106 0 3 chrY 1462317 1462610 -23250469 - AluY SINE Alu -19 292 1 28 0 0 0 chrY 1462621 1462649 -23250430 + AT_rich Low_complexity Low_complexity 1 28 0 334 133 94 39 chrY 1462658 1462786 -23250293 + (TATAA)n Simple_repeat Simple_repeat 1 135 0 402 329 58 13 chrY 1463229 1463384 -23249695 - L2 LINE L2 -2074 1240 1079 2219 92 20 32 chrY 1463979 1464326 -23248753 - L1PA12 LINE L1 -2 6166 5824 253 349 94 9 chrY 1464397 1464503 -23248576 - L2 LINE L2 -5 3308 3194 329 365 37 45 chrY 1464700 1464944 -23248135 - MIR SINE MIR -19 243 2 483 214 10 10 chrY 1464972 1465070 -23248009 - Tigger7 DNA MER2_type 0 2487 2390 1094 235 49 4 chrY 1465070 1465317 -23247762 - Tigger7 DNA MER2_type -2223 264 7 201 342 22 82 chrY 1466254 1466438 -23246641 + L2 LINE L2 2911 3083 -189 207 333 67 44 chrY 1466555 1466645 -23246434 + L2 LINE L2 3173 3264 -8 1670 48 0 0 chrY 1467835 1468043 -23245036 - L1PA4 LINE L1 -8 6147 5940 2141 143 75 36 chrY 1469552 1469964 -23243115 - MSTA LTR MaLR 0 428 1 24 53 0 0 chrY 1470054 1470092 -23242987 + AT_rich Low_complexity Low_complexity 1 38 0 2209 96 0 0 chrY 1470677 1470997 -23242082 - AluSc SINE Alu 0 320 1 25 0 0 0 chrY 1471262 1471287 -23241792 + AT_rich Low_complexity Low_complexity 1 25 0 440 254 103 87 chrY 1471411 1471596 -23241483 - MIR SINE MIR -25 237 50 280 318 29 64 chrY 1471663 1471836 -23241243 + MER5B DNA MER1_type 2 168 -10 6823 187 72 18 chrY 1472422 1473356 -23239723 - L1MA3 LINE L1 -215 7509 6627 198 0 0 0 chrY 1473356 1473378 -23239701 + (TTTTA)n Simple_repeat Simple_repeat 4 25 0 6823 187 72 18 chrY 1473378 1475632 -23237447 - L1MA3 LINE L1 -1097 6627 4027 1686 212 3 3 chrY 1475630 1475941 -23237138 - L1MA3 LINE L1 -6840 725 415 * 3078 169 49 34 chrY 1475941 1476758 -23236321 - pTR5 LTR ERV1 -437 2001 5 320 246 45 18 chrY 1477330 1477440 -23235639 - L1MA9 LINE L1 -173 6139 6027 6811 248 43 36 chrY 1478110 1479794 -23233285 + L1M3 LINE L1 2466 4137 -2009 2142 125 6 10 chrY 1479794 1480107 -23232972 + AluSx SINE Alu 1 312 0 6811 248 43 36 chrY 1480107 1480220 -23232859 + L1M3 LINE L1 4137 4248 -1898 2426 83 0 0 chrY 1480220 1480532 -23232547 - AluSq SINE Alu -1 312 1 6811 248 43 36 chrY 1480532 1480761 -23232318 + L1M3 LINE L1 4248 4474 -1672 1503 220 31 11 chrY 1480761 1481115 -23231964 + MLT1A1 LTR MaLR 5 365 0 6811 248 43 36 chrY 1481115 1481842 -23231237 + L1M3 LINE L1 4474 5297 -849 2188 150 29 3 chrY 1481855 1482229 -23230850 + L1M3 LINE L1 5401 5784 -399 1595 239 20 0 chrY 1482231 1482587 -23230492 - MLT1A1 LTR MaLR -2 363 1 4471 241 47 51 chrY 1482587 1483871 -23229208 - MLT1A1-int LTR MaLR 0 1735 458 2621 204 24 9 chrY 1483854 1484432 -23228647 + L1MA7 LINE L1 5350 5936 -355 * 252 0 0 0 chrY 1484703 1484731 -23228348 + (CA)n Simple_repeat Simple_repeat 2 29 0 273 29 0 0 chrY 1484732 1484766 -23228313 + (GA)n Simple_repeat Simple_repeat 1 34 0 811 311 72 43 chrY 1485173 1485643 -23227436 - MLT1H LTR MaLR -1 548 65 1344 204 139 79 chrY 1485833 1486352 -23226727 + MLT2B3 LTR ERVL 1 550 -4 230 291 0 0 chrY 1486356 1486411 -23226668 + Tigger5 DNA MER2_type 1 55 -2268 * 514 209 38 0 chrY 1486403 1486508 -23226571 + Tigger5 DNA MER2_type 2215 2323 0 727 341 35 29 chrY 1486889 1487340 -23225739 + L1PA16 LINE L1 789 1242 -6332 1725 150 7 0 chrY 1487663 1487936 -23225143 + AluSx SINE Alu 3 277 -35 868 295 59 33 chrY 1488253 1488555 -23224524 + L1PA16 LINE L1 2183 2476 -5098 297 0 0 0 chrY 1488555 1488588 -23224491 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 868 295 59 33 chrY 1488588 1488688 -23224391 + L1PA16 LINE L1 2476 2589 -4985 2415 76 3 0 chrY 1488688 1488989 -23224090 + AluY SINE Alu 1 302 -9 868 295 59 33 chrY 1488989 1489041 -23224038 + L1PA16 LINE L1 2589 2638 -4936 2844 104 35 14 chrY 1489042 1489433 -23223646 + MLT2A1 LTR ERVL 1 403 -41 243 61 0 0 chrY 1489433 1489466 -23223613 + (TA)n Simple_repeat Simple_repeat 1 33 0 2844 104 35 14 chrY 1489466 1489506 -23223573 + MLT2A1 LTR ERVL 403 441 -3 40674 91 15 8 chrY 1489510 1494167 -23218912 + HERVL-A1 LTR ERVL 1 4732 -922 194 88 0 29 chrY 1494167 1494201 -23218878 + L2 LINE L2 1661 1693 -1621 40674 91 15 8 chrY 1494201 1495054 -23218025 + HERVL-A1 LTR ERVL 4732 5578 -76 2818 111 0 5 chrY 1495091 1495497 -23217582 + MLT2A1 LTR ERVL 1 404 -40 278 137 20 20 chrY 1495501 1495603 -23217476 + (TA)n Simple_repeat Simple_repeat 1 102 0 290 139 74 8 chrY 1495636 1495704 -23217375 + MLT2A2 LTR ERVL 400 453 0 12610 238 22 11 chrY 1495735 1500598 -23212481 + L1PA16 LINE L1 2676 7598 -6 184 0 0 88 chrY 1500832 1500866 -23212213 + (TTTTC)n Simple_repeat Simple_repeat 5 35 0 444 279 31 8 chrY 1500883 1501012 -23212067 + MIR SINE MIR 61 192 -70 23 0 0 0 chrY 1501144 1501167 -23211912 + AT_rich Low_complexity Low_complexity 1 23 0 262 258 31 12 chrY 1501840 1502003 -23211076 + (TA)n Simple_repeat Simple_repeat 2 167 0 9353 26 1 3 chrY 1502029 1503912 -23209167 - L1PA3 LINE L1 -3 6152 4271 280 249 45 124 chrY 1505262 1505439 -23207640 + MER103 DNA DNA 1 163 -3 21 36 0 0 chrY 1505667 1505695 -23207384 + AT_rich Low_complexity Low_complexity 1 28 0 191 267 22 67 chrY 1506892 1506982 -23206097 - MIR3 SINE MIR -13 195 110 202 244 0 0 chrY 1507805 1507850 -23205229 + (TA)n Simple_repeat Simple_repeat 1 45 0 1823 209 66 18 chrY 1509095 1509535 -23203544 + LOR1b LTR ERV1 1 461 0 656 142 55 31 chrY 1509538 1509665 -23203414 + LOR1b-int LTR ERV1 266 395 -7725 3301 153 83 15 chrY 1509666 1510280 -23202799 + LOR1-int LTR ERV1 203 858 -7262 881 158 35 0 chrY 1510272 1510443 -23202636 + LOR1-int LTR ERV1 2075 2251 -5869 * 2938 52 6 0 chrY 1510445 1510810 -23202269 - L1PA7 LINE L1 -4 6150 5784 12568 98 6 7 chrY 1510829 1512664 -23200415 + L1P LINE L1 1783 3615 -2531 1302 247 136 42 chrY 1512667 1513456 -23199623 - LTR28 LTR ERV1 -27 993 1 8436 125 30 33 chrY 1513456 1514930 -23198149 + LOR1b-int LTR ERV1 2363 3833 -4287 9631 139 31 32 chrY 1514970 1516757 -23196322 + LOR1b-int LTR ERV1 3743 5528 -2592 1596 161 20 0 chrY 1516743 1516998 -23196081 + LOR1b-int LTR ERV1 5801 6060 -2060 * 578 135 0 0 chrY 1517000 1517089 -23195990 + LOR1b-int LTR ERV1 8030 8118 -2 2028 189 90 2 chrY 1517100 1517524 -23195555 + LOR1b LTR ERV1 1 461 0 11934 243 52 24 chrY 1517768 1524156 -23188923 - L1MA5 LINE L1 -6 7356 1 712 235 45 30 chrY 1525237 1525437 -23187642 - MER3 DNA MER1_type -5 204 2 265 309 41 0 chrY 1525523 1525620 -23187459 - Charlie7 DNA MER1_type -2511 101 1 21 36 0 0 chrY 1525827 1525855 -23187224 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chrY 1526223 1526245 -23186834 + AT_rich Low_complexity Low_complexity 1 22 0 375 41 0 0 chrY 1527153 1527202 -23185877 + (GA)n Simple_repeat Simple_repeat 2 50 0 1734 139 88 0 chrY 1527397 1527670 -23185409 - AluSx SINE Alu -15 297 1 10674 203 52 105 chrY 1527747 1530483 -23182596 + L1P3 LINE L1 4 2858 -3603 1864 150 64 9 chrY 1530483 1530810 -23182269 + THE1B LTR MaLR 1 345 -19 10674 203 52 105 chrY 1530810 1532029 -23181050 + L1P3 LINE L1 2858 4141 -2320 425 250 56 0 chrY 1532017 1532125 -23180954 + L1MC4a LINE L1 6725 6838 -970 * 24 32 0 0 chrY 1532128 1532159 -23180920 + AT_rich Low_complexity Low_complexity 1 31 0 654 294 86 46 chrY 1532275 1532907 -23180172 + L1M4 LINE L1 3106 3822 -2324 387 0 0 0 chrY 1532907 1532950 -23180129 + (CA)n Simple_repeat Simple_repeat 2 44 0 654 294 86 46 chrY 1532950 1533396 -23179683 + L1M4 LINE L1 3822 4249 -1897 1434 192 137 57 chrY 1533508 1533909 -23179170 - MLT2B1 LTR ERVL -87 433 1 366 247 58 31 chrY 1534033 1534256 -23178823 + L1M4 LINE L1 4370 4598 -1548 384 296 107 9 chrY 1534306 1534623 -23178456 + L1M4 LINE L1 4711 5058 -1088 430 284 57 5 chrY 1534627 1534821 -23178258 + L1M4 LINE L1 4904 5107 -1039 * 1784 282 73 25 chrY 1534807 1535750 -23177329 + L1MC4a LINE L1 2235 3132 -3014 1605 176 0 41 chrY 1535750 1536040 -23177039 + AluJo SINE Alu 1 278 -34 396 0 0 0 chrY 1536040 1536084 -23176995 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 1784 282 73 25 chrY 1536084 1536129 -23176950 + L1MC4a LINE L1 3131 3271 -2875 1634 107 0 0 chrY 1536140 1536355 -23176724 + AluSq SINE Alu 5 219 -94 467 153 119 0 chrY 1536381 1536544 -23176535 + AluSg/x SINE Alu 176 352 0 893 122 0 7 chrY 1536550 1536698 -23176381 + (GGAA)n Simple_repeat Simple_repeat 3 149 0 1199 271 10 43 chrY 1536721 1537227 -23175852 + L1MC4a LINE L1 3289 3777 -2369 1247 258 54 16 chrY 1537241 1537629 -23175450 + L1MD2 LINE L1 5947 6349 -10 4968 246 58 47 chrY 1537630 1539581 -23173498 + L1MC4a LINE L1 5837 7808 0 451 315 65 6 chrY 1539586 1540013 -23173066 + L1MC4a LINE L1 5189 5639 -525 2067 93 40 0 chrY 1540148 1540426 -23172653 + AluY SINE Alu 1 289 -22 24 0 0 0 chrY 1540429 1540453 -23172626 + AT_rich Low_complexity Low_complexity 1 24 0 298 197 115 41 chrY 1540644 1540766 -23172313 + L1ME4a LINE L1 5991 6121 0 442 263 23 8 chrY 1541569 1541702 -23171377 + L1ME3A LINE L1 5994 6128 -42 351 312 37 28 chrY 1541703 1541918 -23171161 + L1MC4a LINE L1 5814 6030 -1778 189 107 0 0 chrY 1542125 1542153 -23170926 + (TTCTCC)n Simple_repeat Simple_repeat 5 32 0 26 30 0 0 chrY 1543708 1543741 -23169338 + AT_rich Low_complexity Low_complexity 1 33 0 1346 168 4 58 chrY 1543920 1544194 -23168885 + AluJb SINE Alu 33 291 -21 493 276 74 12 chrY 1544616 1544779 -23168300 + MER45A DNA AcHobo 3 175 -3 23 0 0 0 chrY 1545731 1545754 -23167325 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chrY 1546222 1546248 -23166831 + AT_rich Low_complexity Low_complexity 1 26 0 2394 59 0 13 chrY 1546911 1547214 -23165865 + AluY SINE Alu 1 299 -12 320 301 32 26 chrY 1547646 1547802 -23165277 - L1M4 LINE L1 -3793 2353 2197 3877 213 52 20 chrY 1547954 1549064 -23164015 - L1MA9 LINE L1 -30 6282 5137 5935 220 30 37 chrY 1549070 1549353 -23163726 + L1 LINE L1 3414 3697 -2449 360 0 0 0 chrY 1549353 1549393 -23163686 + (CA)n Simple_repeat Simple_repeat 2 41 0 5935 220 30 37 chrY 1549393 1550339 -23162740 + L1 LINE L1 3697 4648 -1498 2507 146 21 14 chrY 1550339 1550764 -23162315 - MSTA LTR MaLR 0 428 1 7794 207 34 8 chrY 1550765 1552372 -23160707 - MSTA-int LTR MaLR -1 1650 2 2403 156 24 14 chrY 1552374 1552797 -23160282 - MSTA LTR MaLR -1 427 1 5935 220 30 37 chrY 1552797 1553291 -23159788 + L1 LINE L1 4649 5131 -1015 416 324 7 7 chrY 1553361 1553503 -23159576 + MIR SINE MIR 95 236 -26 1470 154 110 65 chrY 1553618 1554047 -23159032 + LTR7 LTR ERV1 1 448 -2 4276 120 3 0 chrY 1554276 1554909 -23158170 + L1PA15 LINE L1 5313 5947 -218 2734 66 54 84 chrY 1554909 1555410 -23157669 + LTR21A LTR ERV1 1 486 -19 1244 105 6 0 chrY 1555414 1555585 -23157494 + L1PA15 LINE L1 5948 6119 -46 308 349 28 0 chrY 1555929 1556038 -23157041 + Charlie1 DNA MER1_type 7 118 -2643 3187 188 8 8 chrY 1556054 1556977 -23156102 - L1PA12 LINE L1 -4103 3481 2552 399 103 0 0 chrY 1556983 1557051 -23156028 - MLT2A2 LTR ERVL 0 453 386 37828 97 5 6 chrY 1557051 1562182 -23150897 - HERVL-A2 LTR ERVL -529 5125 1 3154 112 16 0 chrY 1562182 1562628 -23150451 - MLT2A2 LTR ERVL 0 453 1 9292 221 12 12 chrY 1562639 1563183 -23149896 + L1PA15-16 LINE L1 2762 3305 -3544 2126 192 63 58 chrY 1563183 1563734 -23149345 - MLT2B3 LTR ERVL 0 554 1 9292 221 12 12 chrY 1563734 1565414 -23147665 + L1PA15-16 LINE L1 3305 4985 -1864 249 264 0 0 chrY 1566584 1566637 -23146442 - L2 LINE L2 -2323 991 939 4555 303 63 29 chrY 1566734 1567563 -23145516 - L2 LINE L2 -669 2645 1845 2233 154 39 20 chrY 1567563 1568003 -23145076 + LTR7 LTR ERV1 3 450 0 4555 303 63 29 chrY 1568003 1568936 -23144143 - L2 LINE L2 -1469 1845 945 1324 157 80 110 chrY 1568936 1569400 -23143679 + LTR7 LTR ERV1 1 450 0 4555 303 63 29 chrY 1569400 1569439 -23143640 - L2 LINE L2 -2369 945 909 1898 140 51 40 chrY 1569439 1569810 -23143269 - THE1C LTR MaLR 0 375 1 4555 303 63 29 chrY 1569810 1569901 -23143178 - L2 LINE L2 -2405 909 687 1208 231 51 20 chrY 1570156 1570451 -23142628 + MLT1C LTR MaLR 1 304 -163 3518 231 26 22 chrY 1570453 1571448 -23141631 - L1P LINE L1 -2192 3954 2956 1877 199 94 35 chrY 1571450 1571963 -23141116 - L1PA16 LINE L1 0 6166 5624 476 215 65 0 chrY 1572701 1572794 -23140285 + Tigger3b DNA MER2_type 1 99 -1132 4499 182 28 10 chrY 1572798 1573706 -23139373 + Tigger3b DNA MER2_type 277 1200 -31 11424 157 17 38 chrY 1573741 1575211 -23137868 + Tigger1 DNA MER2_type 1 1500 -918 877 209 0 0 chrY 1575211 1575369 -23137710 + FRAM SINE Alu 3 160 -6 11424 157 17 38 chrY 1575369 1575724 -23137355 + Tigger1 DNA MER2_type 1500 1861 -557 423 0 0 0 chrY 1575724 1575771 -23137308 + (TCTCCC)n Simple_repeat Simple_repeat 1 47 0 9646 82 47 2 chrY 1575771 1577035 -23136044 + SVA Other Other 50 1369 -17 208 51 26 26 chrY 1577041 1577080 -23135999 + (TAAAA)n Simple_repeat Simple_repeat 2 40 0 11424 157 17 38 chrY 1577080 1577380 -23135699 + Tigger1 DNA MER2_type 1865 2091 -327 8586 190 18 8 chrY 1577399 1579022 -23134057 + L1MB1 LINE L1 1 1639 -5224 7053 159 53 16 chrY 1579018 1580098 -23132981 + L1PB2 LINE L1 50 1088 -5115 * 2160 94 0 20 chrY 1580098 1580396 -23132683 + AluSg SINE Alu 17 308 -2 7053 159 53 16 chrY 1580396 1581669 -23131410 + L1PB2 LINE L1 1088 2483 -3720 2907 227 13 21 chrY 1581650 1582417 -23130662 + L1PB2 LINE L1 3806 4566 -1637 * 4228 138 22 14 chrY 1582424 1583155 -23129924 + L1PB2 LINE L1 5469 6205 -3 1809 164 6 9 chrY 1583167 1583484 -23129595 + Tigger1 DNA MER2_type 2078 2393 -25 234 341 100 18 chrY 1583774 1583944 -23129135 - MIR SINE MIR -10 252 69 185 179 0 18 chrY 1584220 1584276 -23128803 + T-rich Low_complexity Low_complexity 4 58 0 261 344 80 31 chrY 1584610 1584773 -23128306 + L3b LINE CR1 1303 1473 -110 204 196 0 39 chrY 1585123 1585174 -23127905 + CT-rich Low_complexity Low_complexity 3 51 0 1751 190 128 8 chrY 1585566 1586034 -23127045 - MER69 DNA AcHobo -4 2522 1999 689 274 6 6 chrY 1586020 1586188 -23126891 - MER69 DNA AcHobo -1958 568 401 * 21 0 0 0 chrY 1586958 1586979 -23126100 + AT_rich Low_complexity Low_complexity 1 21 0 2121 108 26 10 chrY 1587675 1587982 -23125097 - AluSx SINE Alu 0 312 1 7995 223 57 8 chrY 1588750 1589849 -23123230 + L1MB1 LINE L1 3781 4825 -2059 324 0 0 0 chrY 1589849 1589885 -23123194 + (CA)n Simple_repeat Simple_repeat 2 37 0 7995 223 57 8 chrY 1589885 1591737 -23121342 + L1MB1 LINE L1 4825 6884 0 562 264 214 0 chrY 1591962 1592121 -23120958 - MIR SINE MIR -69 193 1 438 285 65 0 chrY 1592389 1592512 -23120567 + MIR SINE MIR 117 247 -15 186 341 24 12 chrY 1592580 1592665 -23120414 - L3b LINE CR1 -146 1437 1352 6911 52 17 1 chrY 1593640 1594627 -23118452 + L1PA6 LINE L1 5154 6154 0 343 244 12 12 chrY 1596090 1596176 -23116903 + MER54A LTR ERVL 1 86 -815 * 2176 175 27 3 chrY 1596160 1596532 -23116547 + MER54A LTR ERVL 520 900 -1 4452 111 69 8 chrY 1597116 1597784 -23115295 + THE1B-int LTR MaLR 872 1580 0 2474 121 6 3 chrY 1597784 1598147 -23114932 + THE1B LTR MaLR 1 364 0 198 336 24 11 chrY 1598153 1598241 -23114838 - MIR3 SINE MIR -48 160 71 229 127 84 28 chrY 1598436 1598507 -23114572 + (TAGA)n Simple_repeat Simple_repeat 1 75 0 1540 263 185 4 chrY 1598512 1599025 -23114054 - MLT2F LTR ERVL -57 606 1 315 319 70 32 chrY 1599028 1599185 -23113894 + MIR SINE MIR 72 234 -28 22286 183 23 17 chrY 1599744 1606111 -23106968 + L1PA10 LINE L1 1 6479 -4 21 36 0 0 chrY 1606495 1606523 -23106556 + AT_rich Low_complexity Low_complexity 1 28 0 561 256 28 6 chrY 1606755 1606931 -23106148 - MER104 DNA MER2_type 0 180 1 2058 86 17 7 chrY 1607957 1608247 -23104832 - AluSx SINE Alu -19 293 1 350 314 59 0 chrY 1609440 1609609 -23103470 + HAL1 LINE L1 1087 1265 -1242 33 25 0 0 chrY 1609702 1609742 -23103337 + AT_rich Low_complexity Low_complexity 1 40 0 672 236 78 5 chrY 1609742 1609933 -23103146 - L1PA16 LINE L1 -2 6164 5960 * 4968 193 15 7 chrY 1609924 1611135 -23101944 - L1PBa LINE L1 -2843 4019 2799 4201 95 34 0 chrY 1611147 1611766 -23101313 - L1PBa LINE L1 -4122 2741 2102 9158 238 16 17 chrY 1611780 1615260 -23097819 + L1PA16 LINE L1 2516 5988 -178 686 220 52 0 chrY 1615441 1615614 -23097465 + L1PA16 LINE L1 5985 6166 0 1498 122 0 0 chrY 1615702 1615916 -23097163 + AluSg/x SINE Alu 95 308 -2 1633 233 19 74 chrY 1615918 1616656 -23096423 + L1MC1 LINE L1 2350 3044 -3382 5560 220 39 10 chrY 1616692 1619283 -23093796 + L1MC1 LINE L1 3931 6595 -18 191 309 94 74 chrY 1619511 1619968 -23093111 - L2 LINE L2 -1300 2014 1549 350 0 0 0 chrY 1620643 1620689 -23092390 + AluY SINE Alu 256 301 0 749 247 90 0 chrY 1621554 1621732 -23091347 - MER58A DNA MER1_type -30 194 1 243 277 196 16 chrY 1622345 1622529 -23090550 + L1ME LINE L1 5569 5785 -336 266 305 119 0 chrY 1623115 1623233 -23089846 - MLT1L LTR MaLR -2 613 482 388 294 24 8 chrY 1623317 1623443 -23089636 - MLT1L LTR MaLR -375 240 113 313 209 64 122 chrY 1624375 1624547 -23088532 - HAL1b LINE L1 0 1348 1187 268 301 13 78 chrY 1624964 1625117 -23087962 - MER5B DNA MER1_type -34 144 2 25 31 0 0 chrY 1625458 1625490 -23087589 + AT_rich Low_complexity Low_complexity 1 32 0 267 54 0 0 chrY 1626572 1626609 -23086470 + (TG)n Simple_repeat Simple_repeat 2 38 0 2360 131 16 11 chrY 1626885 1627258 -23085821 - THE1C LTR MaLR 0 375 1 6985 151 14 9 chrY 1627258 1628371 -23084708 - THE1C-int LTR MaLR 0 1580 463 739 219 52 41 chrY 1628371 1628641 -23084438 + pTR5 LTR ERV1 756 1028 -1410 1734 102 198 220 chrY 1628733 1629339 -23083740 + pTR5 LTR ERV1 31 558 -156 2544 136 101 5 chrY 1629341 1629776 -23083303 - THE1C-int LTR MaLR -1103 477 1 2462 112 48 0 chrY 1629776 1630134 -23082945 - THE1C LTR MaLR 0 375 1 230 351 18 9 chrY 1630134 1630245 -23082834 - L2 LINE L2 -1328 1986 1875 1174 157 0 5 chrY 1630578 1630788 -23082291 + L1MA1 LINE L1 6094 6302 0 198 71 0 0 chrY 1630794 1630822 -23082257 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 4339 53 3 2 chrY 1630833 1631415 -23081664 + L1PA5 LINE L1 2954 3536 -2610 14170 49 11 3 chrY 1631417 1633959 -23079120 + L1PA5 LINE L1 3608 6154 0 264 137 0 0 chrY 1635415 1635466 -23077613 + (CAAAAA)n Simple_repeat Simple_repeat 2 52 0 1255 172 159 7 chrY 1635808 1636110 -23076969 + MER58D DNA MER1_type 3 350 -36 3358 64 2 9 chrY 1636145 1636596 -23076483 - LTR7 LTR ERV1 -2 448 1 2389 96 45 13 chrY 1636596 1636972 -23076107 - HERVH LTR ERV1 0 7713 7326 1337 153 19 0 chrY 1636974 1637190 -23075889 - HERVH LTR ERV1 -1894 5819 5600 4298 149 1 1 chrY 1637194 1637853 -23075226 - HERVH LTR ERV1 -2567 5146 4488 3261 124 6 2 chrY 1637855 1638355 -23074724 - HERVH LTR ERV1 -3720 3993 3492 844 162 20 0 chrY 1638345 1638493 -23074586 - HERVH LTR ERV1 -4423 3290 3140 * 16670 107 34 14 chrY 1638487 1641533 -23071546 - HERVH LTR ERV1 -4726 2987 1 3320 60 2 7 chrY 1641535 1641983 -23071096 - LTR7 LTR ERV1 -2 448 3 1526 205 135 29 chrY 1642687 1643130 -23069949 + LTR2B LTR ERV1 1 490 0 5048 135 30 24 chrY 1643264 1644128 -23068951 + MER4D LTR ERV1 4 872 0 2530 214 21 8 chrY 1644411 1644924 -23068155 - MLT2B1 LTR ERVL 0 520 1 375 247 52 81 chrY 1644975 1645149 -23067930 + MIR SINE MIR 69 237 -25 * 626 265 42 11 chrY 1645125 1645314 -23067765 - MIR SINE MIR 0 262 68 315 164 6 218 chrY 1645442 1645607 -23067472 - L1MC5 LINE L1 -998 6963 6834 409 259 40 53 chrY 1645608 1645855 -23067224 + L1MC5 LINE L1 6933 7176 -785 * 417 235 28 88 chrY 1645852 1646069 -23067010 + L1MC5 LINE L1 7128 7331 -630 255 103 0 0 chrY 1646167 1646206 -23066873 + (CA)n Simple_repeat Simple_repeat 2 40 0 640 198 5 64 chrY 1646220 1646422 -23066657 + L1MC5 LINE L1 7716 7905 -56 286 297 51 72 chrY 1647019 1647214 -23065865 - MIR SINE MIR 0 262 72 305 323 108 18 chrY 1647437 1647660 -23065419 + MIR SINE MIR 8 250 -12 466 310 25 39 chrY 1647663 1647866 -23065213 + MIR SINE MIR 60 259 -3 24 0 0 0 chrY 1647873 1647897 -23065182 + AT_rich Low_complexity Low_complexity 1 24 0 299 246 0 0 chrY 1648455 1648520 -23064559 + L1ME4a LINE L1 5518 5582 -539 412 196 0 18 chrY 1648538 1648650 -23064429 + GA-rich Low_complexity Low_complexity 2 111 0 976 100 0 0 chrY 1648688 1648818 -23064261 + AluSq/x SINE Alu 1 130 -183 229 68 45 0 chrY 1648818 1648862 -23064217 + (TA)n Simple_repeat Simple_repeat 2 47 0 25 0 0 0 chrY 1648862 1648887 -23064192 + AT_rich Low_complexity Low_complexity 1 25 0 351 99 78 7 chrY 1648890 1649032 -23064047 + (TA)n Simple_repeat Simple_repeat 2 153 0 1236 125 0 0 chrY 1649032 1649200 -23063879 + AluSp SINE Alu 133 300 -13 301 295 68 32 chrY 1649201 1649239 -23063840 + L1ME4a LINE L1 5609 5644 -477 1744 146 52 73 chrY 1649239 1649622 -23063457 - THE1C LTR MaLR 0 375 1 301 295 68 32 chrY 1649622 1649834 -23063245 + L1ME4a LINE L1 5644 5868 -253 263 256 66 33 chrY 1649877 1649998 -23063081 + L1ME4a LINE L1 5955 6079 -42 219 69 0 0 chrY 1650008 1650037 -23063042 + (TG)n Simple_repeat Simple_repeat 2 30 0 812 261 59 3 chrY 1650573 1650879 -23062200 + L1ME3A LINE L1 5840 6162 -8 27 29 0 0 chrY 1651337 1651371 -23061708 + AT_rich Low_complexity Low_complexity 1 34 0 460 304 94 9 chrY 1651503 1651842 -23061237 + LTR37A LTR ERV1 38 405 -21 372 211 164 20 chrY 1651861 1652013 -23061066 - L1ME4a LINE L1 -235 5886 5713 216 248 90 113 chrY 1652041 1652174 -23060905 + L2 LINE L2 3183 3312 -1 497 295 96 46 chrY 1652205 1652754 -23060325 + L1ME4a LINE L1 5437 6015 -106 1066 175 19 19 chrY 1652891 1653097 -23059982 + MER34 LTR ERV1 1 206 -336 545 133 211 39 chrY 1653099 1653227 -23059852 - MER66A-int LTR ERV1 -1969 4707 4558 410 221 23 23 chrY 1653228 1653314 -23059765 - MER4D LTR ERV1 -744 159 74 1127 169 0 101 chrY 1653317 1653595 -23059484 - MER66A-int LTR ERV1 -2246 4430 4181 541 169 108 97 chrY 1653616 1653811 -23059268 - MER66A-int LTR ERV1 -5452 1224 1028 2067 241 96 87 chrY 1653846 1654713 -23058366 - MER66A-int LTR ERV1 -5799 877 3 1352 206 159 37 chrY 1654716 1655159 -23057920 - MER66A LTR ERV1 0 478 97 559 157 9 61 chrY 1655246 1655361 -23057718 + MER34 LTR ERV1 431 539 -3 2616 135 8 8 chrY 1655556 1656215 -23056864 + MER34-int LTR ERV1 106 806 -6731 1605 189 4 0 chrY 1656208 1656472 -23056607 + MER57A-int LTR ERV1 361 625 -5321 * 21339 133 13 22 chrY 1656463 1660031 -23053048 + MER57A-int LTR ERV1 1705 5238 -2299 4703 137 7 0 chrY 1660025 1660735 -23052344 + MER57A-int LTR ERV1 6432 7146 -391 * 652 154 32 8 chrY 1660737 1660860 -23052219 + LTR54B LTR ERV1 3 128 -370 1436 112 125 0 chrY 1660860 1661092 -23051987 + MER57A-int LTR ERV1 7272 7532 -5 2173 178 13 0 chrY 1661096 1661494 -23051585 + MER57A LTR ERV1 1 403 0 599 311 0 24 chrY 1662247 1662414 -23050665 + MIR SINE MIR 44 206 -56 2304 192 70 2 chrY 1662510 1663011 -23050068 - MER34C LTR ERV1 -46 539 5 3381 167 25 76 chrY 1663015 1663032 -23050047 - L1MC1 LINE L1 -181 6152 6136 2303 141 11 8 chrY 1663032 1663395 -23049684 - THE1B LTR MaLR 0 364 1 3381 167 25 76 chrY 1663395 1663741 -23049338 - L1MC1 LINE L1 -197 6136 5844 2014 156 10 0 chrY 1663741 1664048 -23049031 - AluSx SINE Alu -2 310 1 3381 167 25 76 chrY 1664048 1664431 -23048648 - L1MC1 LINE L1 -489 5844 5443 2154 220 34 51 chrY 1664644 1665171 -23047908 + MER73 LTR ERVL 127 644 0 389 244 35 12 chrY 1665189 1665361 -23047718 + (TA)n Simple_repeat Simple_repeat 1 176 0 187 317 0 0 chrY 1665450 1665491 -23047588 + L2 LINE L2 3251 3291 -22 21 36 0 0 chrY 1666338 1666366 -23046713 + AT_rich Low_complexity Low_complexity 1 28 0 182 341 61 37 chrY 1666950 1667032 -23046047 + MIR SINE MIR 58 141 -67 32 26 0 0 chrY 1667363 1667402 -23045677 + AT_rich Low_complexity Low_complexity 1 39 0 244 246 14 35 chrY 1667563 1667705 -23045374 + (TATAA)n Simple_repeat Simple_repeat 1 139 0 * 301 219 59 6 chrY 1667680 1667906 -23045173 + (TA)n Simple_repeat Simple_repeat 1 238 0 47 0 0 0 chrY 1667918 1667965 -23045114 + AT_rich Low_complexity Low_complexity 1 47 0 1176 158 19 10 chrY 1668009 1668218 -23044861 - MER61A LTR ERV1 0 343 133 4427 207 43 3 chrY 1668218 1669164 -23043915 - L1PA12 LINE L1 -3490 4094 3111 4917 266 32 36 chrY 1669177 1671174 -23041905 - L1PA12 LINE L1 -4643 2938 528 3164 178 4 2 chrY 1671177 1671678 -23041401 - L1PA12 LINE L1 -7077 504 3 553 161 0 11 chrY 1671879 1671972 -23041107 + LTR59 LTR ERV1 1 92 -505 1772 177 0 19 chrY 1671973 1672283 -23040796 + MER72 LTR ERV1 155 458 -264 1004 201 80 0 chrY 1672283 1672549 -23040530 - L1M2 LINE L1 -753 5393 5150 2065 203 30 14 chrY 1672552 1672990 -23040089 + L1MB1 LINE L1 5655 6099 -69 921 207 23 54 chrY 1672990 1673302 -23039777 - MER2 DNA MER2_type 0 345 2 414 136 0 62 chrY 1673303 1673384 -23039695 + L1MB1 LINE L1 6098 6173 -16 1746 272 90 140 chrY 1673385 1674392 -23038687 - L2 LINE L2 -137 3176 2257 241 254 60 15 chrY 1674392 1674459 -23038620 + MER112 DNA MER1_type 2 71 -189 1746 272 90 140 chrY 1674459 1675445 -23037634 - L2 LINE L2 -1056 2257 1223 2322 91 3 0 chrY 1675751 1676048 -23037031 + AluSc SINE Alu 1 298 -11 308 250 12 12 chrY 1676672 1676752 -23036327 - MIR SINE MIR -71 191 112 26 0 0 0 chrY 1677299 1677325 -23035754 + AT_rich Low_complexity Low_complexity 1 26 0 401 312 53 11 chrY 1677425 1677614 -23035465 + L1ME4a LINE L1 5631 5827 -294 6931 213 14 23 chrY 1677700 1679485 -23033594 + L1M1 LINE L1 15 1776 -5789 2140 229 53 9 chrY 1679486 1680067 -23033012 - L1M4 LINE L1 -745 5637 5031 1056 229 40 112 chrY 1680068 1680469 -23032610 + MLT1A2 LTR MaLR 3 374 0 2225 229 36 0 chrY 1680469 1680972 -23032107 + MLT1A2-int LTR MaLR 1 521 -1214 6107 105 7 24 chrY 1680992 1682895 -23030184 - L1PA10 LINE L1 0 6168 4268 4247 88 2 4 chrY 1682895 1683451 -23029628 + HERVL LTR ERVL 2401 2955 -2699 1692 96 0 0 chrY 1683451 1683670 -23029409 + MLT2A1 LTR ERVL 145 363 -81 549 0 0 0 chrY 1683671 1683732 -23029347 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 281 0 108 0 chrY 1683732 1683769 -23029310 + MLT2A1 LTR ERVL 404 444 0 470 134 24 0 chrY 1683769 1683851 -23029228 - L1PA10 LINE L1 -1873 4273 4190 1640 213 0 16 chrY 1683873 1684183 -23028896 + AluJo SINE Alu 3 307 -5 451 280 0 89 chrY 1684191 1684359 -23028720 + MLT1A2-int LTR MaLR 555 707 -664 1872 261 30 54 chrY 1684563 1685188 -23027891 + MLT1A2-int LTR MaLR 1126 1735 0 528 276 47 12 chrY 1685188 1685358 -23027721 + MLT1A2 LTR MaLR 1 176 -189 1027 234 28 3 chrY 1685369 1685690 -23027389 - L1M4 LINE L1 -1542 4840 4512 207 0 0 0 chrY 1685703 1685726 -23027353 + (TG)n Simple_repeat Simple_repeat 2 24 0 2968 256 84 46 chrY 1685769 1686760 -23026319 - L1M4 LINE L1 -3344 3038 2085 1649 203 102 2 chrY 1686760 1687154 -23025925 - Tigger2a DNA MER2_type -1 433 1 2968 256 84 46 chrY 1687154 1687325 -23025754 - L1M4 LINE L1 -4297 2085 1922 1562 239 10 32 chrY 1687325 1687553 -23025526 - MSTD LTR MaLR -4 392 175 2388 76 0 13 chrY 1687553 1687688 -23025391 + AluY SINE Alu 1 136 -175 2552 67 0 3 chrY 1687688 1688000 -23025079 + AluY SINE Alu 1 311 0 2388 76 0 13 chrY 1688000 1688168 -23024911 + AluY SINE Alu 136 300 -11 1562 239 10 32 chrY 1688168 1688340 -23024739 - MSTD LTR MaLR -221 175 1 2968 256 84 46 chrY 1688340 1688878 -23024201 - L1M4 LINE L1 -4460 1922 1405 1906 230 47 5 chrY 1688878 1689287 -23023792 + MSTB LTR MaLR 1 426 0 2968 256 84 46 chrY 1689287 1689740 -23023339 - L1M4 LINE L1 -4977 1405 813 2792 13 0 0 chrY 1689913 1690221 -23022858 - AluYb8 SINE Alu -10 308 1 444 108 0 0 chrY 1690746 1690811 -23022268 - AluJ/FLAM SINE Alu -247 65 1 7496 233 25 15 chrY 1690815 1692442 -23020637 - L1P LINE L1 -825 5321 3672 258 81 0 0 chrY 1692442 1692479 -23020600 + (TG)n Simple_repeat Simple_repeat 2 38 0 7496 233 25 15 chrY 1692479 1692797 -23020282 - L1P LINE L1 -2474 3672 3358 31 0 0 0 chrY 1695054 1695085 -23017994 + AT_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chrY 1695102 1695126 -23017953 + AT_rich Low_complexity Low_complexity 1 24 0 336 143 0 0 chrY 1695261 1695317 -23017762 + (CA)n Simple_repeat Simple_repeat 1 56 0 1065 222 60 4 chrY 1695336 1695584 -23017495 - MLT2C1 LTR ERVL -48 349 88 21 0 0 0 chrY 1696548 1696569 -23016510 + AT_rich Low_complexity Low_complexity 1 21 0 816 267 0 42 chrY 1696645 1696836 -23016243 - MER5A DNA MER1_type 0 189 7 400 257 0 50 chrY 1696946 1697047 -23016032 - MER5B DNA MER1_type 0 178 83 6637 83 24 0 chrY 1697049 1698016 -23015063 - L1PA8 LINE L1 -7 6165 5192 7809 124 6 0 chrY 1698020 1699233 -23013846 + L1PA8 LINE L1 3985 5204 -942 42758 53 3 1 chrY 1699400 1705538 -23007541 + L1PA4 LINE L1 1 6152 -3 12615 188 40 7 chrY 1706007 1712191 -23000888 - L1PB2 LINE L1 -7 6860 472 313 282 0 24 chrY 1712197 1712282 -23000797 - MER20 DNA MER1_type -57 162 80 1990 152 3 7 chrY 1712949 1713252 -22999827 + AluSx SINE Alu 1 302 -10 1514 217 3 20 chrY 1713666 1713966 -22999113 + AluJo SINE Alu 3 297 -15 1858 152 40 37 chrY 1713991 1714365 -22998714 - THE1C LTR MaLR 0 375 1 3797 213 30 11 chrY 1714702 1715836 -22997243 - L1PB4 LINE L1 -2 7216 6057 1894 231 14 19 chrY 1715839 1716255 -22996824 + MSTB LTR MaLR 3 416 -10 3086 230 35 5 chrY 1716263 1717214 -22995865 - L1PB4 LINE L1 -1153 6055 5045 * 3741 258 18 43 chrY 1717185 1717684 -22995395 - L1PB4 LINE L1 -2834 4374 3864 7260 45 28 0 chrY 1717684 1718557 -22994522 + MER11D LTR ERVK 1 897 0 3741 258 18 43 chrY 1718557 1718626 -22994453 - L1PB4 LINE L1 -3344 3864 3795 2322 95 3 0 chrY 1718626 1718922 -22994157 + AluSp SINE Alu 1 297 -16 3741 258 18 43 chrY 1718922 1720028 -22993051 - L1PB4 LINE L1 -3413 3795 2789 949 145 22 112 chrY 1720030 1720209 -22992870 + MSTA LTR MaLR 1 163 -263 542 211 0 0 chrY 1770232 1770346 -22942733 - L1 LINE L1 -3599 3609 3496 26 0 0 0 chrY 1770346 1770372 -22942707 + AT_rich Low_complexity Low_complexity 1 26 0 1247 183 35 0 chrY 1770372 1770601 -22942478 + MSTA LTR MaLR 192 428 0 5976 186 15 32 chrY 1770645 1771819 -22941260 + MSTA-int LTR MaLR 427 1580 0 2603 172 19 9 chrY 1771819 1772243 -22940836 + MSTA LTR MaLR 1 428 0 2674 251 24 19 chrY 1772243 1773119 -22939960 - L1PB4 LINE L1 -4506 2703 1824 603 378 26 48 chrY 1773127 1773585 -22939494 - L1PB4 LINE L1 -5602 1607 1160 1840 320 60 9 chrY 1774211 1774905 -22938174 - L1PB4 LINE L1 -6476 733 4 352 289 78 35 chrY 1774940 1775172 -22937907 - L1ME LINE L1 -342 5779 5538 370 343 34 34 chrY 1775541 1775777 -22937302 - LTR16C LTR ERVL -4 487 252 21251 172 14 19 chrY 1777792 1781695 -22931384 + L1PA10 LINE L1 6 3926 -2557 3667 174 62 30 chrY 1781695 1782450 -22930629 + LTR19C LTR ERV1 1 779 0 21251 172 14 19 chrY 1782450 1782600 -22930479 + L1PA10 LINE L1 3926 4075 -2408 2124 135 48 25 chrY 1782600 1782956 -22930123 + THE1B LTR MaLR 1 364 0 10082 117 28 12 chrY 1782956 1784511 -22928568 + THE1B-int LTR MaLR 1 1580 0 1849 158 47 44 chrY 1784512 1784874 -22928205 + THE1B LTR MaLR 2 364 0 21251 172 14 19 chrY 1784874 1787306 -22925773 + L1PA10 LINE L1 4073 6472 -11 25 31 0 0 chrY 1787556 1787588 -22925491 + AT_rich Low_complexity Low_complexity 1 32 0 2651 283 53 52 chrY 1787828 1788564 -22924515 - L1MEc LINE L1 -2172 4043 3309 1994 112 4 0 chrY 1788564 1788880 -22924199 - AluSq SINE Alu 0 323 7 2651 283 53 52 chrY 1788880 1790529 -22922550 - L1MEc LINE L1 -2906 3309 1686 8895 202 20 32 chrY 1790647 1791472 -22921607 - L1PA15 LINE L1 -12 6153 5320 2212 78 0 3 chrY 1791472 1791811 -22921268 - AluY SINE Alu 0 338 1 8895 202 20 32 chrY 1791811 1794079 -22919000 - L1PA15 LINE L1 -845 5320 3061 7768 66 4 12 chrY 1794079 1795099 -22917980 + MER11C LTR ERVK 1 1012 -59 385 319 42 7 chrY 1797011 1797155 -22915924 + MIR SINE MIR 3 151 -111 250 328 93 49 chrY 1797446 1797693 -22915386 + LTR16B LTR ERVL 57 314 -150 1598 306 20 30 chrY 1798585 1799124 -22913955 + HERV16 LTR ERVL 894 1427 -3569 280 254 34 0 chrY 1799174 1799292 -22913787 + (TA)n Simple_repeat Simple_repeat 1 122 0 1905 142 16 13 chrY 1799414 1799725 -22913354 - AluJb SINE Alu 0 312 1 16272 190 52 10 chrY 1801823 1809200 -22903879 - L1MA2 LINE L1 -19 7704 12 2206 119 0 3 chrY 1809277 1809587 -22903492 - AluSx SINE Alu -2 310 2 1220 188 164 21 chrY 1809862 1810149 -22902930 - MLT1A1 LTR MaLR -32 333 6 846 240 23 46 chrY 1810273 1810490 -22902589 + MIR SINE MIR 36 247 -15 3392 64 9 0 chrY 1810615 1811055 -22902024 + L1PA7 LINE L1 5711 6154 0 24 0 0 0 chrY 1811091 1811115 -22901964 + AT_rich Low_complexity Low_complexity 1 24 0 207 0 0 0 chrY 1811117 1811140 -22901939 + (TAAAAA)n Simple_repeat Simple_repeat 1 23 0 27 29 0 0 chrY 1811784 1811818 -22901261 + AT_rich Low_complexity Low_complexity 1 34 0 1706 129 5 74 chrY 1812128 1812499 -22900580 - MER4A LTR ERV1 0 664 261 551 134 21 10 chrY 1812499 1812596 -22900483 - MER4A LTR ERV1 -566 98 1 226 263 63 63 chrY 1813963 1814058 -22899021 + MIR SINE MIR 51 145 -63 312 361 0 13 chrY 1814226 1814384 -22898695 + MER117 DNA MER1_type 11 166 -31 387 359 128 24 chrY 1815126 1815272 -22897807 + L2 LINE L2 1811 1940 -1374 2275 140 146 91 chrY 1815272 1815901 -22897178 + MER4A LTR ERV1 1 664 0 387 359 128 24 chrY 1815901 1816175 -22896904 + L2 LINE L2 1940 2275 -1039 2604 99 19 140 chrY 1816913 1817428 -22895651 + MLT2A2 LTR ERVL 1 453 0 2045 300 25 16 chrY 1817725 1818396 -22894683 + L2 LINE L2 2035 2711 -603 682 218 21 0 chrY 1818534 1818676 -22894403 - MLT2A2 LTR ERVL 0 453 309 311 286 17 34 chrY 1819385 1819563 -22893516 - L1M4 LINE L1 -866 5280 5106 4579 56 8 7 chrY 1820442 1821032 -22892047 - LTR10C LTR ERV1 0 591 1 250 183 28 0 chrY 1821349 1821420 -22891659 + (CA)n Simple_repeat Simple_repeat 2 74 0 502 283 97 37 chrY 1822839 1823248 -22889831 - MLT1L LTR MaLR -7 608 109 1509 202 46 0 chrY 1823323 1823440 -22889639 + AluJb SINE Alu 4 114 -198 180 0 0 0 chrY 1823440 1823460 -22889619 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 1509 202 46 0 chrY 1823460 1823624 -22889455 + AluJb SINE Alu 114 298 -14 33 43 0 0 chrY 1824428 1824475 -22888604 + AT_rich Low_complexity Low_complexity 1 47 0 212 220 0 20 chrY 1825359 1825409 -22887670 + (TA)n Simple_repeat Simple_repeat 2 50 0 715 164 176 4 chrY 1825409 1825574 -22887505 + MLT1B LTR MaLR 2 179 -195 789 283 64 32 chrY 1825586 1826118 -22886961 - MLT1G1 LTR MaLR 0 595 4 1627 144 186 45 chrY 1827436 1827790 -22885289 - MER4A LTR ERV1 0 664 261 693 91 0 10 chrY 1827790 1827889 -22885190 - MER4A LTR ERV1 -566 98 1 28 48 0 0 chrY 1828262 1828304 -22884775 + AT_rich Low_complexity Low_complexity 1 42 0 393 176 0 12 chrY 1828455 1828540 -22884539 - pTR5 LTR ERV1 -1237 1201 1118 4901 109 28 65 chrY 1828697 1829550 -22883529 + LTR12 LTR ERV1 5 826 0 2908 187 34 5 chrY 1829550 1830170 -22882909 + L1P LINE L1 4721 5361 -785 * 3823 247 46 3 chrY 1830169 1831222 -22881857 - L1PA13 LINE L1 -4413 2384 1278 1385 245 55 54 chrY 1831259 1831962 -22881117 - L1M4c LINE L1 -2465 3917 3214 316 286 9 19 chrY 1831963 1832068 -22881011 - L1M4c LINE L1 -4279 2105 2002 3014 258 55 38 chrY 1832072 1833268 -22879811 - L1M4c LINE L1 -4497 1887 665 1983 212 52 50 chrY 1833268 1833312 -22879767 - MLT2B1 LTR ERVL 0 520 478 351 0 0 0 chrY 1833312 1833351 -22879728 + (CA)n Simple_repeat Simple_repeat 2 40 0 1983 212 52 50 chrY 1833351 1833825 -22879254 - MLT2B1 LTR ERVL -42 478 1 3014 258 55 38 chrY 1833825 1833955 -22879124 - L1M4c LINE L1 -5719 665 539 1188 148 0 0 chrY 1834457 1834633 -22878446 + AluSq SINE Alu 38 213 -100 357 301 161 16 chrY 1834968 1835161 -22877918 - MIR SINE MIR 0 262 42 317 314 57 21 chrY 1835530 1835670 -22877409 + MIR SINE MIR 31 175 -87 553 268 11 112 chrY 1835689 1835965 -22877114 + MER21B LTR ERV1 1 248 -615 399 159 0 0 chrY 1835970 1836039 -22877040 + L1MA5 LINE L1 6147 6215 -85 1147 259 71 69 chrY 1836039 1836310 -22876769 + MER21B LTR ERV1 253 527 -336 2090 136 3 0 chrY 1836310 1836619 -22876460 - AluSx SINE Alu -2 310 1 1147 259 71 69 chrY 1836619 1836852 -22876227 + MER21B LTR ERV1 527 758 -105 2167 121 3 6 chrY 1838125 1838438 -22874641 - AluSx SINE Alu 0 312 1 1762 117 4 0 chrY 1839021 1839277 -22873802 + AluSp SINE Alu 53 309 -4 4026 188 47 12 chrY 1839456 1839918 -22873161 - L1PA16 LINE L1 -12 6154 5647 2216 110 0 0 chrY 1839918 1840208 -22872871 + AluSq SINE Alu 1 290 -23 4026 188 47 12 chrY 1840208 1840589 -22872490 - L1PA16 LINE L1 -519 5647 5281 509 173 0 0 chrY 1840589 1840693 -22872386 + L1PA16 LINE L1 5174 5277 -869 318 78 20 20 chrY 1840714 1840765 -22872314 + MER4A LTR ERV1 48 98 -566 1469 152 16 80 chrY 1840765 1841073 -22872006 + MER4A LTR ERV1 261 602 -62 1933 110 55 14 chrY 1841073 1841364 -22871715 - AluSc SINE Alu -6 303 1 1469 152 16 80 chrY 1841364 1841424 -22871655 + MER4A LTR ERV1 602 664 0 1773 312 24 17 chrY 1841424 1841701 -22871378 - L1PA12 LINE L1 -4651 2930 2656 3201 74 2 22 chrY 1841701 1842158 -22870921 - LTR7 LTR ERV1 -2 448 1 1773 312 24 17 chrY 1842158 1842627 -22870452 - L1PA12 LINE L1 -4925 2656 2179 2340 55 3 10 chrY 1842916 1843209 -22869870 - AluY SINE Alu -20 291 1 448 299 86 11 chrY 1843399 1843573 -22869506 + L2 LINE L2 3094 3280 -33 611 268 85 0 chrY 1843864 1844017 -22869062 - MER5B DNA MER1_type -12 166 1 2828 216 76 6 chrY 1844071 1844269 -22868810 - L1MB7 LINE L1 -8 6176 5993 183 42 0 0 chrY 1844269 1844293 -22868786 + (TTG)n Simple_repeat Simple_repeat 1 24 0 2828 216 76 6 chrY 1844293 1844788 -22868291 - L1MB7 LINE L1 -191 5993 5434 2276 116 0 0 chrY 1845278 1845588 -22867491 + AluSg SINE Alu 1 310 0 447 206 131 0 chrY 1845698 1845805 -22867274 - L1PA15 LINE L1 -4 6161 6041 1833 148 70 25 chrY 1845807 1846164 -22866915 - THE1C LTR MaLR 0 375 3 1988 103 6 29 chrY 1846164 1846476 -22866603 - THE1C-int LTR MaLR -1 1579 1275 5791 115 10 18 chrY 1846484 1847940 -22865139 - L1PA11 LINE L1 -1 6173 4703 5059 149 5 2 chrY 1847940 1848783 -22864296 + L1PA11 LINE L1 3837 4681 -1465 2523 160 10 0 chrY 1848792 1849199 -22863880 - THE1C-int LTR MaLR -303 1277 867 492 176 46 9 chrY 1849204 1849312 -22863767 + MSTB1-int LTR MaLR 1539 1650 -1 1834 175 108 5 chrY 1849316 1849705 -22863374 + MSTB1 LTR MaLR 4 432 0 520 246 0 0 chrY 1849709 1849823 -22863256 + MER77 LTR ERV1 426 539 -66 1162 254 73 51 chrY 1849886 1850484 -22862595 + L1MC4 LINE L1 6458 7089 -953 4348 163 25 6 chrY 1850603 1851407 -22861672 - L1PB2 LINE L1 0 6151 5333 603 122 10 10 chrY 1851407 1851505 -22861574 + MER4A LTR ERV1 1 98 -566 1310 155 47 46 chrY 1851505 1851846 -22861233 + MER4A LTR ERV1 261 660 -4 9320 137 139 60 chrY 1851852 1854400 -22858679 + MER4A-int LTR ERV1 1 2485 -4113 5593 134 55 17 chrY 1854396 1855391 -22857688 + MER4A-int LTR ERV1 5516 6548 -50 * 405 0 0 0 chrY 1855391 1855436 -22857643 + (A)n Simple_repeat Simple_repeat 1 45 0 496 188 10 10 chrY 1855469 1855565 -22857514 + MER4A LTR ERV1 1 96 -568 1846 144 3 24 chrY 1855567 1855920 -22857159 + MER4A LTR ERV1 261 664 0 837 232 0 5 chrY 1855927 1856151 -22856928 - L1PB2 LINE L1 -817 5329 5107 1611 193 174 0 chrY 1856158 1856266 -22856813 + MSTA LTR MaLR 1 89 -339 287 25 25 0 chrY 1856266 1856306 -22856773 + (TGAG)n Simple_repeat Simple_repeat 3 43 0 1611 193 174 0 chrY 1856306 1856560 -22856519 + MSTA LTR MaLR 89 426 -2 6212 213 36 15 chrY 1856562 1856644 -22856435 + MSTA-int LTR MaLR 1 80 -1571 2365 89 0 3 chrY 1856644 1856946 -22856133 + AluY SINE Alu 2 302 -9 6212 213 36 15 chrY 1856946 1858150 -22854929 + MSTA-int LTR MaLR 80 1314 -337 5098 73 0 12 chrY 1858150 1858806 -22854273 - LTR17 LTR ERV1 0 780 133 2060 143 6 23 chrY 1858806 1859022 -22854057 + MSTA-int LTR MaLR 1316 1525 -126 2413 108 128 5 chrY 1859022 1859421 -22853658 - LTR7 LTR ERV1 -2 448 1 2060 143 6 23 chrY 1859421 1859546 -22853533 + MSTA-int LTR MaLR 1525 1651 0 2208 182 39 0 chrY 1859546 1859958 -22853121 + MSTA LTR MaLR 1 428 0 8202 234 24 37 chrY 1859975 1860149 -22852930 - L1PB2 LINE L1 -1059 5087 4912 2142 136 0 3 chrY 1860149 1860459 -22852620 - AluSx SINE Alu -1 311 3 8202 234 24 37 chrY 1860459 1860911 -22852168 - L1PB2 LINE L1 -1234 4912 4456 1984 148 0 0 chrY 1860911 1861216 -22851863 - AluY SINE Alu -6 305 1 8202 234 24 37 chrY 1861216 1863087 -22849992 - L1PB2 LINE L1 -1690 4456 2622 320 234 47 19 chrY 1863617 1863724 -22849355 + LTR43 LTR ERV1 187 296 -306 9873 270 29 33 chrY 1863780 1867142 -22845937 + L1PA13 LINE L1 1 3358 -4226 11623 213 8 29 chrY 1867142 1869387 -22843692 + L1PA13 LINE L1 3953 6179 -1422 183 42 0 0 chrY 1869387 1869411 -22843668 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 11623 213 8 29 chrY 1869411 1870805 -22842274 + L1PA13 LINE L1 6179 7601 0 9873 270 29 33 chrY 1870805 1870817 -22842262 + L1PA13 LINE L1 3358 3369 -4215 2138 74 30 17 chrY 1871727 1872026 -22841053 + AluY SINE Alu 1 303 -8 1461 277 103 15 chrY 1873121 1873731 -22839348 - L1MC4 LINE L1 -132 7910 7247 1211 258 16 0 chrY 1873740 1874058 -22839021 - L1MC4 LINE L1 -953 7089 6767 341 257 56 23 chrY 1874059 1874187 -22838892 - L1MD3 LINE L1 -1431 6564 6446 1659 254 39 34 chrY 1874806 1875449 -22837630 + L1MC4 LINE L1 7265 7910 -132 231 183 33 0 chrY 1875452 1875554 -22837525 + (TA)n Simple_repeat Simple_repeat 1 105 0 33 56 0 0 chrY 1875629 1875683 -22837396 + AT_rich Low_complexity Low_complexity 1 54 0 4699 127 21 3 chrY 1875741 1876496 -22836583 + L1MA2 LINE L1 5535 6303 -1 232 385 58 0 chrY 1876506 1876662 -22836417 - L3b LINE CR1 -202 1381 1217 33 43 0 0 chrY 1876745 1876792 -22836287 + AT_rich Low_complexity Low_complexity 1 47 0 50 18 0 0 chrY 1876906 1876963 -22836116 + AT_rich Low_complexity Low_complexity 1 57 0 2504 53 3 7 chrY 1877276 1877578 -22835501 - AluSp SINE Alu -12 301 1 205 162 0 0 chrY 1877608 1877645 -22835434 + (TG)n Simple_repeat Simple_repeat 2 38 0 319 260 57 8 chrY 1878108 1878231 -22834848 - HAL1b LINE L1 -11 1337 1209 308 312 72 51 chrY 1878330 1878622 -22834457 - L1MD3 LINE L1 -1897 5911 5614 21 0 0 0 chrY 1879377 1879398 -22833681 + AT_rich Low_complexity Low_complexity 1 21 0 2202 107 0 3 chrY 1879693 1879993 -22833086 + AluSx SINE Alu 1 299 -13 188 111 28 0 chrY 1880250 1880286 -22832793 + T-rich Low_complexity Low_complexity 2 38 0 272 172 0 16 chrY 1880286 1880350 -22832729 + CT-rich Low_complexity Low_complexity 2 64 0 238 250 36 77 chrY 1880632 1880723 -22832356 - L1MEd LINE L1 -4917 1202 1120 1933 169 14 14 chrY 1880723 1881071 -22832008 + MER7A DNA MER2_type 1 346 0 238 250 36 77 chrY 1881071 1881147 -22831932 - L1MEd LINE L1 -4999 1120 1042 2206 98 7 0 chrY 1881169 1881464 -22831615 - AluSp SINE Alu -16 297 1 286 224 0 24 chrY 1881482 1881567 -22831512 + (TCTA)n Simple_repeat Simple_repeat 4 86 0 272 211 11 106 chrY 1881649 1881829 -22831250 - L1MEd LINE L1 -5188 931 769 722 104 157 0 chrY 1881889 1882004 -22831075 - AluSq/x SINE Alu -180 133 1 658 79 0 0 chrY 1882609 1882698 -22830381 - L1PBa LINE L1 -4657 2206 2118 * 15163 145 22 90 chrY 1882696 1886093 -22826986 - L1P LINE L1 -2969 3177 12 21 0 0 0 chrY 1886239 1886260 -22826819 + AT_rich Low_complexity Low_complexity 1 21 0 5337 169 22 20 chrY 1886261 1886926 -22826153 - L1MA5A LINE L1 -4 6293 5624 1692 153 0 0 chrY 1886926 1887174 -22825905 - AluSq SINE Alu -65 248 1 5337 169 22 20 chrY 1887174 1887535 -22825544 - L1MA5A LINE L1 -673 5624 5265 3089 172 24 15 chrY 1887548 1888218 -22824861 - L1MA5A LINE L1 -1129 5017 4342 21 0 0 0 chrY 1888269 1888290 -22824789 + AT_rich Low_complexity Low_complexity 1 21 0 29847 112 16 47 chrY 1889608 1895553 -22817526 + L1P3 LINE L1 1 5763 -706 569 171 0 18 chrY 1895585 1895696 -22817383 - L1MD3 LINE L1 -999 6996 6888 365 136 15 0 chrY 1895697 1895763 -22817316 + CT-rich Low_complexity Low_complexity 4 70 0 302 258 100 68 chrY 1895763 1895953 -22817126 - L1MC3 LINE L1 -1107 6678 6483 2986 268 57 36 chrY 1895964 1898184 -22814895 - L1MC3 LINE L1 -743 5403 4017 442 184 68 60 chrY 1898357 1898526 -22814553 - L1ME LINE L1 -642 5522 5345 5330 104 8 5 chrY 1900441 1901219 -22811860 + L1PA10 LINE L1 5389 6168 0 21 0 0 0 chrY 1901272 1901293 -22811786 + AT_rich Low_complexity Low_complexity 1 21 0 2260 192 66 25 chrY 1901827 1902420 -22810659 + pTR5 LTR ERV1 729 1345 -1093 4558 111 21 117 chrY 1902435 1903344 -22809735 + LTR12 LTR ERV1 5 826 0 25 90 0 0 chrY 1903728 1903795 -22809284 + AT_rich Low_complexity Low_complexity 1 67 0 25 31 0 0 chrY 1904987 1905019 -22808060 + AT_rich Low_complexity Low_complexity 1 32 0 21 57 0 0 chrY 1906559 1906594 -22806485 + AT_rich Low_complexity Low_complexity 1 35 0 271 300 33 50 chrY 1906784 1906904 -22806175 + MER77 LTR ERV1 68 185 -420 593 241 33 71 chrY 1906949 1907166 -22805913 + MER21B LTR ERV1 142 354 -251 2688 138 37 16 chrY 1907166 1907754 -22805325 + MER4B LTR ERV1 1 779 0 5758 136 92 37 chrY 1907754 1908400 -22804679 + MER4B-int LTR ERV1 1 734 -6024 7403 145 16 25 chrY 1908400 1909687 -22803392 - MER52C LTR ERV1 -2 1276 1 5758 136 92 37 chrY 1909687 1910132 -22802947 + MER4B-int LTR ERV1 734 1153 -5605 294 73 0 0 chrY 1910135 1910176 -22802903 + (TG)n Simple_repeat Simple_repeat 2 42 0 3185 106 70 42 chrY 1910181 1910659 -22802420 + MER4B-int LTR ERV1 1458 1921 -4677 2677 93 3 0 chrY 1910659 1911013 -22802066 - THE1A LTR MaLR 0 355 1 3185 106 70 42 chrY 1911013 1911656 -22801423 + MER4B-int LTR ERV1 1921 2482 -4116 1682 145 5 77 chrY 1911656 1912028 -22801051 - MER4A LTR ERV1 0 664 261 594 113 21 10 chrY 1912028 1912125 -22800954 - MER4A LTR ERV1 -566 98 1 4357 124 45 13 chrY 1912126 1912876 -22800203 - MER4A-int LTR ERV1 0 6598 5825 311 185 0 0 chrY 1912905 1912959 -22800120 - L1PA8A LINE L1 -3 6128 6075 3269 209 31 7 chrY 1912962 1913557 -22799522 - L1MB2 LINE L1 -67 6104 5488 2242 101 6 19 chrY 1913557 1913873 -22799206 - AluSq SINE Alu -1 312 1 3269 209 31 7 chrY 1913873 1913994 -22799085 - L1MB2 LINE L1 -683 5488 5371 26 64 0 0 chrY 1914294 1914341 -22798738 + AT_rich Low_complexity Low_complexity 1 47 0 860 194 196 60 chrY 1914341 1914708 -22798371 + MSTC LTR MaLR 1 417 -11 1333 207 97 20 chrY 1914796 1915096 -22797983 - MLT1A1 LTR MaLR -42 323 1 1896 235 10 2 chrY 1915100 1915509 -22797570 - MLT1A1-int LTR MaLR -5 1730 1319 230 296 70 92 chrY 1915588 1915730 -22797349 - MLT1A1-int LTR MaLR -397 1338 1200 733 233 75 46 chrY 1915730 1915970 -22797109 + MLT1A1 LTR MaLR 119 365 0 2961 228 24 31 chrY 1916118 1916372 -22796707 - L1MB3 LINE L1 -2 6181 5927 5390 67 32 8 chrY 1916372 1917120 -22795959 + MER4E LTR ERV1 1 766 0 2961 228 24 31 chrY 1917120 1917649 -22795430 - L1MB3 LINE L1 -256 5927 5403 753 255 113 24 chrY 1917671 1918043 -22795036 - L1MB3 LINE L1 -1458 4688 4284 350 257 0 0 chrY 1918057 1918127 -22794952 + FRAM/FAM SINE Alu 1 70 -105 366 23 0 0 chrY 1918144 1918187 -22794892 + (CA)n Simple_repeat Simple_repeat 2 44 0 5036 259 35 21 chrY 1918187 1920239 -22792840 - L1 LINE L1 -2328 4520 2458 1996 168 53 26 chrY 1920239 1920656 -22792423 - MSTA LTR MaLR 0 428 1 8724 186 16 13 chrY 1920658 1922301 -22790778 - MSTA-int LTR MaLR -2 1649 2 2078 131 22 6 chrY 1922302 1922621 -22790458 - MSTA LTR MaLR 0 428 105 2614 99 42 5 chrY 1922621 1923005 -22790074 + MLT2A1 LTR ERVL 1 398 -46 353 231 0 0 chrY 1923013 1923078 -22790001 + MST-int LTR MaLR 1095 1159 -492 228 86 0 0 chrY 1923084 1923119 -22789960 + (TA)n Simple_repeat Simple_repeat 1 35 0 309 24 0 24 chrY 1923119 1923160 -22789919 + MLT2A2 LTR ERVL 414 453 0 * 547 171 43 3 chrY 1923160 1923263 -22789816 - MSTA LTR MaLR -249 115 3 4077 221 37 31 chrY 1923266 1924440 -22788639 - L1PA15-16 LINE L1 -4387 3197 2017 431 290 77 18 chrY 1924442 1924611 -22788468 - L1PA15-16 LINE L1 -5672 1913 1735 295 337 87 53 chrY 1924781 1925045 -22788034 - L1M2 LINE L1 -5781 1804 1532 306 328 106 88 chrY 1925052 1925372 -22787707 - L1M2 LINE L1 -5986 1599 1274 1049 309 39 32 chrY 1926075 1926557 -22786522 - L1M2 LINE L1 -6411 1174 6 1664 228 20 12 chrY 1926565 1926964 -22786115 - L1MCa LINE L1 -6005 421 20 2263 233 56 10 chrY 1927093 1927794 -22785285 - L1MB8 LINE L1 -246 5932 5208 514 263 17 56 chrY 1927870 1928049 -22785030 + MLT1A1 LTR MaLR 25 196 -169 817 250 46 5 chrY 1928066 1928262 -22784817 + MLT1A1 LTR MaLR 162 365 0 44 88 0 0 chrY 1929927 1930041 -22783038 + AT_rich Low_complexity Low_complexity 1 114 0 3840 218 40 30 chrY 1930045 1931737 -22781342 + L1MB3 LINE L1 4077 5786 -394 1718 206 9 15 chrY 1931739 1932079 -22781000 + MER2 DNA MER2_type 3 340 -5 1840 133 41 85 chrY 1932081 1932493 -22780586 + L1MB3 LINE L1 5783 6176 -7 616 285 59 14 chrY 1932735 1932956 -22780123 - MIR SINE MIR -26 236 6 257 327 154 13 chrY 1932953 1933109 -22779970 - MIR SINE MIR -67 195 18 * 328 315 65 74 chrY 1933280 1933604 -22779475 + L1M4 LINE L1 3191 3511 -2635 1593 200 15 63 chrY 1933688 1934070 -22779009 + MLT1B LTR MaLR 1 363 -27 4295 108 14 17 chrY 1934070 1934107 -22778972 - LTR9B LTR ERV1 0 644 608 2773 19 0 6 chrY 1934107 1934419 -22778660 - AluY SINE Alu -1 310 1 4295 108 14 17 chrY 1934419 1935027 -22778052 - LTR9B LTR ERV1 -36 608 1 1593 200 15 63 chrY 1935027 1935054 -22778025 + MLT1B LTR MaLR 363 390 0 1281 356 69 11 chrY 1935280 1936522 -22776557 + L1M3a LINE L1 2 847 -5108 * 1803 255 48 2 chrY 1936518 1937118 -22775961 + L1M3a LINE L1 2512 3139 -2895 451 83 0 0 chrY 1937118 1937178 -22775901 - MSTA LTR MaLR 0 428 369 1285 185 63 69 chrY 1937198 1937385 -22775694 + L1MA9 LINE L1 5626 5813 -499 2231 104 0 3 chrY 1937385 1937674 -22775405 - AluSg SINE Alu -21 289 2 1285 185 63 69 chrY 1937674 1938117 -22774962 + L1MA9 LINE L1 5813 6290 -22 369 358 74 37 chrY 1938228 1938524 -22774555 + L1M2 LINE L1 10 316 -6533 1283 99 5 38 chrY 1938534 1938746 -22774333 + L1PA11 LINE L1 5970 6174 0 270 111 0 173 chrY 1938746 1938827 -22774252 + L1MA9 LINE L1 6246 6312 0 10516 231 16 4 chrY 1938830 1941486 -22771593 - L1P LINE L1 -796 5350 2662 8652 255 47 17 chrY 1941472 1943993 -22769086 - L1PA13 LINE L1 -4183 2614 1 * 417 263 32 0 chrY 1944007 1944163 -22768916 - Zaphod DNA AcHobo -2981 1050 890 24 53 0 0 chrY 1944167 1944205 -22768874 + AT_rich Low_complexity Low_complexity 1 38 0 265 224 141 12 chrY 1944455 1944540 -22768539 - MIR SINE MIR -71 191 96 364 338 32 32 chrY 1946019 1946235 -22766844 + MIR SINE MIR 40 255 -7 468 226 0 0 chrY 1947099 1947183 -22765896 - AluJ/FLAM SINE Alu -228 84 1 620 287 15 65 chrY 1947213 1947474 -22765605 - MIR SINE MIR 0 262 15 21 36 0 0 chrY 1948137 1948165 -22764914 + AT_rich Low_complexity Low_complexity 1 28 0 403 258 22 32 chrY 1948370 1948507 -22764572 + L1MC5 LINE L1 6766 6900 -908 394 255 28 75 chrY 1948531 1948743 -22764336 + L1MC5 LINE L1 6908 7109 -852 288 0 0 0 chrY 1948819 1948851 -22764228 + (TG)n Simple_repeat Simple_repeat 1 32 0 350 246 75 26 chrY 1949026 1949294 -22763785 + L1MC5 LINE L1 7472 7752 -209 908 319 60 30 chrY 1949298 1949768 -22763311 + L1PA16 LINE L1 1 484 -7097 8748 223 37 16 chrY 1949776 1953324 -22759755 + L1PA16 LINE L1 3954 7600 -4 25 0 0 0 chrY 1953345 1953370 -22759709 + AT_rich Low_complexity Low_complexity 1 25 0 214 210 113 32 chrY 1953414 1953476 -22759603 - MIR SINE MIR -152 110 44 22 0 0 0 chrY 1953702 1953724 -22759355 + AT_rich Low_complexity Low_complexity 1 22 0 269 54 89 0 chrY 1954648 1954704 -22758375 - L1MA7 LINE L1 0 6291 6231 5994 128 17 14 chrY 1954948 1955933 -22757146 - L1MA2 LINE L1 0 7723 6736 183 42 0 0 chrY 1955933 1955957 -22757122 + (TTG)n Simple_repeat Simple_repeat 1 24 0 995 143 0 0 chrY 1955957 1956104 -22756975 - AluSg/x SINE Alu -31 281 135 17704 194 25 29 chrY 1956104 1957643 -22755436 - L1MA2 LINE L1 -1376 6189 4645 2087 140 0 0 chrY 1957643 1957935 -22755144 - AluSx SINE Alu -18 294 3 17704 194 25 29 chrY 1957935 1959684 -22753395 - L1MA2 LINE L1 -2920 4645 2890 198 0 0 0 chrY 1959684 1959706 -22753373 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 17704 194 25 29 chrY 1959706 1960323 -22752756 - L1MA2 LINE L1 -4675 2890 2272 2849 174 17 42 chrY 1960323 1960914 -22752165 - LTR22 LTR ERVK -4 576 1 17704 194 25 29 chrY 1960914 1961283 -22751796 - L1MA2 LINE L1 -5293 2272 1903 2294 82 0 38 chrY 1961283 1961599 -22751480 - AluY SINE Alu -7 304 1 17704 194 25 29 chrY 1961599 1963514 -22749565 - L1MA2 LINE L1 -5662 1903 22 8433 186 29 24 chrY 1963637 1965167 -22747912 - L1MA2 LINE L1 0 7723 6203 3373 196 19 80 chrY 1965167 1966198 -22746881 + LTR5 LTR ERVK 1 969 0 8433 186 29 24 chrY 1966198 1966414 -22746665 - L1MA2 LINE L1 -1520 6203 5990 1935 116 0 38 chrY 1966414 1966755 -22746324 - AluSc SINE Alu 0 330 1 8433 186 29 24 chrY 1966755 1968137 -22744942 - L1MA2 LINE L1 -1733 5990 4572 10268 169 138 9 chrY 1968153 1970322 -22742757 - L1MA2 LINE L1 -4287 3278 831 2094 157 11 16 chrY 1970322 1970686 -22742393 + THE1B LTR MaLR 1 362 -2 9663 132 34 35 chrY 1970692 1972270 -22740809 + THE1B-int LTR MaLR 6 1580 0 2297 142 11 0 chrY 1972270 1972630 -22740449 + THE1B LTR MaLR 1 364 0 3440 236 39 20 chrY 1972631 1973427 -22739652 - L1MA2 LINE L1 -6731 834 24 201 121 0 0 chrY 1973458 1973491 -22739588 + (T)n Simple_repeat Simple_repeat 1 33 0 23 33 0 0 chrY 1973630 1973660 -22739419 + AT_rich Low_complexity Low_complexity 1 30 0 350 335 20 69 chrY 1973856 1973985 -22739094 + L1MDa LINE L1 17 134 -6406 2566 61 0 3 chrY 1973985 1974296 -22738783 + AluY SINE Alu 1 310 -1 350 335 20 69 chrY 1974296 1974369 -22738710 + L1MDa LINE L1 134 209 -6331 277 301 38 30 chrY 1974937 1975070 -22738009 + L1MDa LINE L1 882 1015 -5528 438 243 2 45 chrY 1975081 1975257 -22737822 + L1MDa LINE L1 999 1167 -5363 909 269 74 37 chrY 1975300 1975976 -22737103 + L1MDa LINE L1 1296 2756 -3784 * 3878 196 37 1 chrY 1975973 1976781 -22736298 - L1P LINE L1 -1004 5142 4306 1859 101 27 20 chrY 1976770 1977067 -22736012 + L1PA13 LINE L1 5746 6044 -119 * 1988 184 28 14 chrY 1977067 1977426 -22735653 + THE1B LTR MaLR 1 364 0 10504 121 25 3 chrY 1977426 1978959 -22734120 + THE1B-int LTR MaLR 11 1580 0 2110 164 28 17 chrY 1978959 1979319 -22733760 + THE1B LTR MaLR 1 364 0 766 124 8 0 chrY 1979319 1979440 -22733639 + L1PA13 LINE L1 6040 6161 -2 7896 133 42 12 chrY 2079511 2080953 -22632126 + L1M1 LINE L1 2050 3534 -4031 1206 102 28 0 chrY 2080957 2081133 -22631946 + L1M1 LINE L1 5612 5792 -512 944 143 0 51 chrY 2081133 2081308 -22631771 - MER30 DNA MER1_type 0 230 65 231 271 0 0 chrY 2081553 2081601 -22631478 + (CA)n Simple_repeat Simple_repeat 2 49 0 2225 89 6 25 chrY 2082057 2082372 -22630707 + AluSx SINE Alu 1 309 -3 198 321 53 48 chrY 2082378 2082565 -22630514 - L2 LINE L2 -1238 2076 1889 679 334 49 40 chrY 2082819 2083289 -22629790 + L1M3b LINE L1 1 474 -5807 1251 296 131 7 chrY 2083728 2084250 -22628829 + L2 LINE L2 2738 3313 0 202 103 0 0 chrY 2085831 2085860 -22627219 - L2 LINE L2 0 3272 3244 21 36 0 0 chrY 2085925 2085953 -22627126 + AT_rich Low_complexity Low_complexity 1 28 0 257 280 72 57 chrY 2086207 2086400 -22626679 + L2 LINE L2 1303 1498 -1816 390 356 80 41 chrY 2086424 2087103 -22625976 + L2 LINE L2 1608 2312 -1002 1300 77 14 19 chrY 2087334 2087542 -22625537 + L1P4 LINE L1 5280 5486 -679 321 240 0 13 chrY 2087547 2087622 -22625457 - AluS SINE Alu -228 74 1 1010 177 0 5 chrY 2087664 2087850 -22625229 - L1PA15 LINE L1 -2 6163 5979 1878 128 17 10 chrY 2087864 2088161 -22624918 + L1P4 LINE L1 5494 5792 -373 228 269 0 21 chrY 2088140 2088233 -22624846 + L1MC4 LINE L1 6613 6703 -1339 * 262 278 0 0 chrY 2088175 2088265 -22624814 - L1MC4 LINE L1 -1339 6703 6614 2148 159 3 23 chrY 2088266 2088656 -22624423 + L1PA15 LINE L1 5782 6163 -2 368 227 67 2 chrY 2088700 2088925 -22624154 + AluJo SINE Alu 3 290 -12 2687 16 3 3 chrY 2089002 2089309 -22623770 + AluYa5 SINE Alu 1 307 -4 2105 96 0 47 chrY 2089458 2089622 -22623457 - AluY SINE Alu -24 287 142 2733 7 3 10 chrY 2089622 2089930 -22623149 - AluYa5 SINE Alu -5 306 1 2105 96 0 47 chrY 2089930 2090066 -22623013 - AluY SINE Alu -169 142 1 540 374 88 38 chrY 2090966 2091713 -22621366 - L2 LINE L2 -563 2751 1967 2296 149 81 0 chrY 2091935 2092331 -22620748 + MSTA LTR MaLR 1 428 0 19361 190 31 30 chrY 2092350 2097594 -22615485 + L1MA3 LINE L1 17 5340 -2225 538 131 0 0 chrY 2097594 2097678 -22615401 + AluS SINE Alu 1 84 -229 19361 190 31 30 chrY 2097678 2098560 -22614519 + L1MA3 LINE L1 5340 6219 -1346 1868 146 33 36 chrY 2098563 2098925 -22614154 - THE1B LTR MaLR -3 361 1 10969 109 25 0 chrY 2098925 2100459 -22612620 - THE1B-int LTR MaLR 0 1580 8 1909 146 30 46 chrY 2100459 2100829 -22612250 - THE1B LTR MaLR 0 364 1 3592 157 18 11 chrY 2100831 2100976 -22612103 + L1MA3 LINE L1 6217 6360 -1363 306 0 0 0 chrY 2100976 2101010 -22612069 + (CA)n Simple_repeat Simple_repeat 1 34 0 3592 157 18 11 chrY 2101010 2101299 -22611780 + L1MA3 LINE L1 6360 6646 -1077 1937 133 67 28 chrY 2101299 2101660 -22611419 - THE1C LTR MaLR 0 375 1 3592 157 18 11 chrY 2101660 2102225 -22610854 + L1MA3 LINE L1 6646 7225 -498 2543 167 72 35 chrY 2102245 2102789 -22610290 - MER4B LTR ERV1 -46 564 1 7544 125 49 9 chrY 2102789 2104471 -22608608 - MER4B-int LTR ERV1 0 6758 4974 2968 135 18 8 chrY 2104471 2104983 -22608096 + L1MA3 LINE L1 7208 7724 0 2294 126 19 25 chrY 2105478 2105844 -22607235 + THE1B LTR MaLR 1 364 0 24 32 0 0 chrY 2106429 2106460 -22606619 + AT_rich Low_complexity Low_complexity 1 31 0 270 95 0 0 chrY 2106735 2106777 -22606302 + (TG)n Simple_repeat Simple_repeat 1 42 0 248 292 21 69 chrY 2107333 2107477 -22605602 + L2 LINE L2 3160 3296 -17 213 211 0 0 chrY 2107483 2107535 -22605544 + GA-rich Low_complexity Low_complexity 3 54 0 300 154 0 0 chrY 2110548 2110600 -22602479 + (TA)n Simple_repeat Simple_repeat 1 52 0 1464 45 0 0 chrY 2110600 2110777 -22602302 - L1PA5 LINE L1 -13 6141 5965 1835 177 43 0 chrY 2111271 2111622 -22601457 - MER47A DNA MER2_type 0 366 1 189 180 0 0 chrY 2112476 2112526 -22600553 + T-rich Low_complexity Low_complexity 1 50 0 43292 46 1 3 chrY 2112550 2118716 -22594363 - L1PA3 LINE L1 0 6155 1 983 329 36 18 chrY 2118811 2119197 -22593882 - L1M3d LINE L1 -5498 393 1 1852 216 28 27 chrY 2119234 2119775 -22593304 + MLT2A2 LTR ERVL 3 539 -15 195 42 0 0 chrY 2119778 2119802 -22593277 + (GA)n Simple_repeat Simple_repeat 2 25 0 720 292 4 4 chrY 2119815 2120079 -22593000 - L1M4 LINE L1 -1405 4741 4478 287 281 0 0 chrY 2120081 2120145 -22592934 + LTR16B LTR ERVL 401 464 0 21 0 0 0 chrY 2120167 2120188 -22592891 + AT_rich Low_complexity Low_complexity 1 21 0 279 361 57 16 chrY 2120457 2120579 -22592500 + L2 LINE L2 3141 3267 -5 9750 218 43 11 chrY 2120650 2122674 -22590405 + L1M2 LINE L1 91 2180 -4669 5354 141 11 6 chrY 2122676 2123518 -22589561 + L1PA4 LINE L1 1 846 -5615 * 23974 69 4 5 chrY 2123517 2127623 -22585456 + L1PA4 LINE L1 2392 6495 0 184 316 26 44 chrY 2128826 2128940 -22584139 + MIR SINE MIR 105 216 -46 186 43 0 0 chrY 2129188 2129211 -22583868 + (CA)n Simple_repeat Simple_repeat 2 24 0 543 323 32 14 chrY 2129400 2129620 -22583459 - L3 LINE CR1 -189 1388 1165 189 391 64 35 chrY 2129629 2129831 -22583248 - L2 LINE L2 -686 2628 2421 2579 123 3 3 chrY 2130595 2130970 -22582109 + THE1C LTR MaLR 1 375 0 9302 142 44 7 chrY 2130970 2132493 -22580586 + THE1C-int LTR MaLR 1 1580 0 2352 154 3 8 chrY 2132493 2132870 -22580209 + THE1C LTR MaLR 1 375 0 1770 124 3 54 chrY 2133285 2133599 -22579480 - L1PA12 LINE L1 -77 6091 5794 29 60 0 0 chrY 2133832 2133882 -22579197 + AT_rich Low_complexity Low_complexity 1 50 0 5613 159 73 26 chrY 2134444 2135164 -22577915 + Tigger3b DNA MER2_type 1 799 -2229 1907 171 36 13 chrY 2135164 2135557 -22577522 - L1MA5 LINE L1 0 6300 5899 5613 159 73 26 chrY 2135557 2136012 -22577067 + Tigger3b DNA MER2_type 799 1231 0 5742 112 7 6 chrY 2136312 2137177 -22575902 - L1PB2 LINE L1 -3 7567 6702 * 9264 214 25 7 chrY 2137147 2139309 -22573770 - L1PB2 LINE L1 -1502 6063 3863 4769 143 24 25 chrY 2139311 2140249 -22572830 - L1PB2 LINE L1 -3900 3665 2729 864 158 36 108 chrY 2140272 2140494 -22572585 - MSTA LTR MaLR 0 428 170 5800 225 44 6 chrY 2140494 2141745 -22571334 - L1PB2 LINE L1 -6259 1306 9 191 327 19 0 chrY 2141844 2141896 -22571183 + MIR SINE MIR 97 149 -113 311 243 14 0 chrY 2142106 2142176 -22570903 + L1MB1 LINE L1 5919 5989 -179 184 140 60 0 chrY 2142470 2142520 -22570559 + (TATATG)n Simple_repeat Simple_repeat 2 54 0 354 274 78 28 chrY 2142676 2142855 -22570224 - MIR SINE MIR 0 262 75 469 194 0 0 chrY 2142905 2143003 -22570076 - L1MB7 LINE L1 -18 6166 6069 311 115 0 39 chrY 2143003 2143055 -22570024 + THE1C LTR MaLR 2 51 -324 5678 141 9 3 chrY 2143061 2143932 -22569147 + THE1C-int LTR MaLR 705 1580 0 1739 168 35 35 chrY 2143937 2144307 -22568772 + THE1C LTR MaLR 6 375 0 2253 198 40 12 chrY 2144307 2144801 -22568278 - L1MB7 LINE L1 -111 6073 5566 187 276 52 17 chrY 2145490 2145548 -22567531 - MIR SINE MIR -154 108 49 682 183 14 0 chrY 2146401 2146543 -22566536 + L1MA7 LINE L1 6146 6289 -2 415 267 0 84 chrY 2146574 2146705 -22566374 + L2 LINE L2 3190 3309 -4 748 213 11 6 chrY 2147315 2147489 -22565590 - L1MD3 LINE L1 -2 7993 7819 5493 154 51 12 chrY 2148258 2149504 -22563575 - L1MA4A LINE L1 -6 6297 5005 345 47 0 0 chrY 2150187 2150230 -22562849 + (CA)n Simple_repeat Simple_repeat 2 44 0 28 0 0 0 chrY 2151797 2151825 -22561254 + AT_rich Low_complexity Low_complexity 1 28 0 18016 143 7 14 chrY 2151825 2155845 -22557234 - L1PA10 LINE L1 -9 6474 2485 880 189 71 19 chrY 2155825 2156037 -22557042 - L1PA10 LINE L1 -5106 1355 1133 * 1211 162 10 0 chrY 2156029 2156233 -22556846 + L1P LINE L1 1722 1927 -4219 918 302 4 4 chrY 2156236 2156511 -22556568 - L1PA10 LINE L1 -5599 276 2 6224 164 12 3 chrY 2156532 2158103 -22554976 - L1MA3 LINE L1 0 7724 6136 3005 216 43 0 chrY 2158144 2158742 -22554337 - L1MA3 LINE L1 -6927 638 15 1403 205 57 0 chrY 2158738 2159069 -22554010 + L1MA4A LINE L1 2401 2750 -4099 * 7577 181 37 16 chrY 2159095 2159707 -22553372 + L1MA4A LINE L1 4315 4913 -2092 1772 169 3 10 chrY 2159707 2160003 -22553076 - AluSx SINE Alu -14 298 5 7577 181 37 16 chrY 2160003 2161847 -22551232 + L1MA4A LINE L1 4913 6824 -181 3088 185 15 8 chrY 2161883 2162494 -22550585 + L1 LINE L1 3581 4195 -1951 5531 130 13 4 chrY 2162501 2164253 -22548826 + L1PA15 LINE L1 4379 6165 0 26 50 0 0 chrY 2164851 2164891 -22548188 + AT_rich Low_complexity Low_complexity 1 40 0 1932 125 14 0 chrY 2165317 2165636 -22547443 - AluSq SINE Alu 0 323 1 2170 88 11 0 chrY 2165812 2166097 -22546982 - AluSx SINE Alu -24 288 1 2459 65 0 0 chrY 2166502 2166812 -22546267 - AluY SINE Alu -1 310 1 479 179 0 21 chrY 2167261 2167356 -22545723 + FLAM_A SINE Alu 14 106 -36 22 80 0 0 chrY 2167909 2167959 -22545120 + AT_rich Low_complexity Low_complexity 1 50 0 2433 89 12 0 chrY 2168144 2168482 -22544597 - L1P LINE L1 -1224 4922 4581 2084 88 7 0 chrY 2168482 2168762 -22544317 + L1PA7 LINE L1 5859 6154 0 13717 41 2 3 chrY 2169304 2171774 -22541305 - L1PA4 LINE L1 -1 6154 3684 398 347 33 20 chrY 2172319 2172564 -22540515 - L3b LINE CR1 -232 1351 1104 4471 161 62 19 chrY 2172673 2173223 -22539856 - L1MB1 LINE L1 0 6168 5643 1991 138 3 6 chrY 2173223 2173534 -22539545 + AluSq SINE Alu 1 310 -3 4471 161 62 19 chrY 2173534 2173665 -22539414 - L1MB1 LINE L1 -525 5643 5519 2235 108 0 0 chrY 2173665 2173962 -22539117 - AluSg1 SINE Alu -12 297 1 4471 161 62 19 chrY 2173962 2174321 -22538758 - L1MB1 LINE L1 -649 5519 5104 378 301 87 0 chrY 2174337 2174440 -22538639 - L2 LINE L2 -5 3308 3197 22 0 0 0 chrY 2175305 2175327 -22537752 + AT_rich Low_complexity Low_complexity 1 22 0 196 191 45 79 chrY 2175511 2175600 -22537479 - L2 LINE L2 -125 3188 3103 1595 167 3 35 chrY 2176064 2176352 -22536727 - AluJo SINE Alu -22 290 12 606 318 82 14 chrY 2176414 2176634 -22536445 - MIR SINE MIR -8 254 20 1156 228 88 28 chrY 2177400 2177720 -22535359 - MLT1A1 LTR MaLR -24 341 3 27 0 0 0 chrY 2177864 2177891 -22535188 + AT_rich Low_complexity Low_complexity 1 27 0 1756 234 73 16 chrY 2178830 2179257 -22533822 + MER21B LTR ERV1 344 794 -69 704 139 4 0 chrY 2179356 2179476 -22533603 - LTR12 LTR ERV1 0 714 359 349 247 0 0 chrY 2179476 2179557 -22533522 - LTR30 LTR ERV1 -98 624 544 1309 113 161 2 chrY 2179557 2179799 -22533280 - LTR12 LTR ERV1 -421 2017 57 226 250 0 0 chrY 2179799 2179851 -22533228 - LTR30 LTR ERV1 -670 52 1 1825 291 70 10 chrY 2180294 2180878 -22532201 + L1MDb LINE L1 9 627 -5782 2693 250 136 24 chrY 2180913 2182129 -22530950 + L1MDb LINE L1 378 1707 -4699 2408 61 3 0 chrY 2183545 2183840 -22529239 + AluY SINE Alu 1 296 -15 6732 135 26 15 chrY 2184053 2186034 -22527045 - L1MA2 LINE L1 0 6304 4314 1101 184 61 17 chrY 2187003 2187297 -22525782 + L1MDb LINE L1 1698 2004 -4402 925 161 0 0 chrY 2187326 2187469 -22525610 - FRAM SINE Alu -26 150 8 296 343 20 0 chrY 2189180 2189282 -22523797 + L2 LINE L2 2967 3070 -243 438 237 21 0 chrY 2189306 2189403 -22523676 - Tigger7 DNA MER2_type 0 2487 2389 * 1207 208 72 4 chrY 2189401 2189651 -22523428 - Tigger7 DNA MER2_type -466 267 1 361 198 66 60 chrY 2189892 2190059 -22523020 - L1MCa LINE L1 -5117 1447 1280 53 17 0 0 chrY 2190093 2190153 -22522926 + AT_rich Low_complexity Low_complexity 1 60 0 257 250 53 0 chrY 2190153 2190229 -22522850 - L1MCa LINE L1 -5965 80 1 2054 224 22 60 chrY 2191265 2191407 -22521672 - MER92B LTR ERV1 0 636 490 1215 64 13 0 chrY 2191407 2191564 -22521515 - L1PA3 LINE L1 0 6155 5997 2054 224 22 60 chrY 2191564 2192019 -22521060 - MER92B LTR ERV1 -146 490 62 949 183 18 0 chrY 2196344 2196513 -22516566 + AluSg/x SINE Alu 129 300 -10 240 369 71 74 chrY 2197073 2197480 -22515599 - L2 LINE L2 -38 3234 2829 16982 166 16 24 chrY 2198152 2198257 -22514822 - L1PA13 LINE L1 0 6814 6710 2362 84 0 3 chrY 2198257 2198556 -22514523 - AluSq SINE Alu -15 298 1 16982 166 16 24 chrY 2198556 2200311 -22512768 - L1PA13 LINE L1 -104 6710 4943 1452 186 55 0 chrY 2200311 2200585 -22512494 - AluJo SINE Alu -23 289 1 16982 166 16 24 chrY 2200585 2201989 -22511090 - L1PA13 LINE L1 -1871 4943 3529 1948 136 21 0 chrY 2201989 2202276 -22510803 - AluSx SINE Alu -19 293 1 16982 166 16 24 chrY 2202276 2202583 -22510496 - L1PA13 LINE L1 -3285 3529 3221 441 0 0 0 chrY 2202583 2202632 -22510447 + (TA)n Simple_repeat Simple_repeat 1 49 0 16982 166 16 24 chrY 2202632 2203418 -22509661 - L1PA13 LINE L1 -3593 3221 2494 3854 169 4 17 chrY 2203406 2203419 -22509660 - L1PA13 LINE L1 -4693 2094 2082 * 1845 181 3 0 chrY 2203419 2203722 -22509357 - AluSx SINE Alu -2 310 7 3854 169 4 17 chrY 2203722 2204418 -22508661 - L1PA13 LINE L1 -4705 2082 1394 2785 283 134 12 chrY 2204419 2205239 -22507840 - L1PA13 LINE L1 -5529 1258 339 * 9255 169 171 9 chrY 2205237 2206958 -22506121 - L1PA12 LINE L1 -5577 2004 5 28 0 0 0 chrY 2207338 2207366 -22505713 + AT_rich Low_complexity Low_complexity 1 28 0 792 292 161 11 chrY 2207841 2208214 -22504865 - MLT1J2 LTR MaLR -21 429 1 32 26 0 0 chrY 2208305 2208344 -22504735 + AT_rich Low_complexity Low_complexity 1 39 0 5858 227 42 5 chrY 2208390 2209677 -22503402 + L1M1 LINE L1 12 1346 -6219 * 12084 190 24 20 chrY 2209674 2209764 -22503315 + L1M1 LINE L1 2765 2853 -4712 182 33 67 0 chrY 2209764 2209794 -22503285 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 12084 190 24 20 chrY 2209794 2213323 -22499756 + L1M1 LINE L1 2853 6380 -1185 645 120 0 20 chrY 2213323 2213423 -22499656 + MER4A LTR ERV1 1 98 -566 1828 112 158 78 chrY 2213423 2213797 -22499282 + MER4A LTR ERV1 261 664 0 3324 140 8 9 chrY 2213797 2214615 -22498464 + L1M1 LINE L1 6377 7193 -528 234 0 0 0 chrY 2216972 2216998 -22496081 + (TA)n Simple_repeat Simple_repeat 2 27 0 2617 20 0 0 chrY 2216998 2217292 -22495787 - AluY SINE Alu -17 294 1 21 0 0 0 chrY 2217402 2217423 -22495656 + AT_rich Low_complexity Low_complexity 1 21 0 2705 29 0 6 chrY 2218518 2218829 -22494250 - AluY SINE Alu -2 309 1 24 77 0 0 chrY 2219373 2219425 -22493654 + AT_rich Low_complexity Low_complexity 1 52 0 341 332 100 11 chrY 2219622 2219812 -22493267 + MIR SINE MIR 2 208 -54 1779 170 7 13 chrY 2220550 2220856 -22492223 - MER7A DNA MER2_type 0 346 45 10285 162 34 18 chrY 2221832 2222305 -22490774 + L1MA2 LINE L1 3206 3670 -2634 387 0 0 0 chrY 2222305 2222348 -22490731 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 10285 162 34 18 chrY 2222348 2222897 -22490182 + L1MA2 LINE L1 3670 4209 -2095 450 36 0 0 chrY 2222897 2222953 -22490126 + (CA)n Simple_repeat Simple_repeat 1 56 0 10285 162 34 18 chrY 2222953 2224787 -22488292 + L1MA2 LINE L1 4209 6107 -197 2125 124 3 0 chrY 2224787 2225093 -22487986 + AluSp SINE Alu 1 307 -6 10285 162 34 18 chrY 2225093 2225295 -22487784 + L1MA2 LINE L1 6107 6304 0 937 233 30 0 chrY 2225802 2226004 -22487075 + MSTB2 LTR MaLR 1 208 -249 2133 195 2 5 chrY 2226010 2226405 -22486674 + MER57A LTR ERV1 10 403 0 1201 151 4 100 chrY 2226405 2226663 -22486416 + MSTB2 LTR MaLR 225 457 0 530 316 19 6 chrY 2226674 2226832 -22486247 - MIR SINE MIR -89 173 14 508 265 111 19 chrY 2227066 2227228 -22485851 - MIR SINE MIR -49 213 37 1124 192 33 0 chrY 2227410 2227655 -22485424 - L1MB7 LINE L1 -9 6175 5923 1161 134 6 0 chrY 2228337 2228516 -22484563 - L1P4 LINE L1 -464 5702 5523 * 31059 42 3 1 chrY 2228510 2232385 -22480694 - L1P LINE L1 -1455 4691 810 7425 33 3 0 chrY 2232385 2233603 -22479476 + L1PA4 LINE L1 4933 6153 -2 9224 193 18 18 chrY 2233603 2234591 -22478488 - L1P4 LINE L1 -628 5537 4551 2446 82 0 0 chrY 2234591 2234885 -22478194 - AluY SINE Alu -17 294 1 9224 193 18 18 chrY 2234885 2236167 -22476912 - L1P4 LINE L1 -1614 4551 3271 3823 223 14 2 chrY 2236141 2237113 -22475966 - L1 LINE L1 -836 5310 4327 * 4073 165 15 2 chrY 2237113 2237853 -22475226 - L1PA16 LINE L1 -10 7594 6843 3878 115 11 4 chrY 2237865 2238571 -22474508 - L1P4 LINE L1 -349 5814 5106 11763 261 33 10 chrY 2238581 2240339 -22472740 - L1PA16 LINE L1 -783 6801 5084 207 0 0 0 chrY 2240339 2240362 -22472717 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 11763 261 33 10 chrY 2240362 2243100 -22469979 - L1PA16 LINE L1 -2500 5084 2182 485 294 18 0 chrY 2243329 2243517 -22469562 - L1PA16 LINE L1 -5274 2300 2083 827 330 96 42 chrY 2243585 2244139 -22468940 - L1PA16 LINE L1 -6203 1371 788 21 100 0 0 chrY 2244228 2244298 -22468781 + AT_rich Low_complexity Low_complexity 1 70 0 239 200 0 36 chrY 2244586 2244641 -22468438 - L2 LINE L2 -15 3257 3205 276 336 96 0 chrY 2244922 2245047 -22468032 + MIR SINE MIR 95 231 -31 21 0 0 31 chrY 2245502 2245514 -22467565 + AT_rich Low_complexity Low_complexity 1 12 -19 1926 125 11 0 chrY 2245514 2245795 -22467284 + AluSg SINE Alu 1 284 -26 21 0 0 31 chrY 2245795 2245814 -22467265 + AT_rich Low_complexity Low_complexity 12 31 0 586 246 44 22 chrY 2245990 2246173 -22466906 - MER4C LTR ERV1 -4 461 275 1996 106 3 0 chrY 2246192 2246484 -22466595 - L1PA13 LINE L1 -11 6152 5860 459 88 44 0 chrY 2246488 2246556 -22466523 + L1PA13 LINE L1 5768 5838 -330 367 159 214 35 chrY 2246556 2246667 -22466412 - LTR34 LTR ERV1 -203 496 278 481 207 14 163 chrY 2246667 2246931 -22466148 - LTR34 LTR ERV1 -244 455 136 330 218 73 18 chrY 2247001 2247111 -22465968 - MER4C LTR ERV1 -349 116 1 469 126 0 2 chrY 2247750 2247828 -22465251 + L1PA14 LINE L1 5887 5963 -191 382 237 17 34 chrY 2248020 2248138 -22464941 - L1MC4 LINE L1 -152 7890 7775 * 1103 269 65 28 chrY 2248134 2248531 -22464548 - L1MC4 LINE L1 -1172 6870 6459 2011 141 141 5 chrY 2248755 2249130 -22463949 + MSTA LTR MaLR 1 426 -2 6254 159 11 136 chrY 2249134 2249525 -22463554 + MSTA-int LTR MaLR 3 441 -1139 2156 116 3 0 chrY 2249525 2249818 -22463261 + AluSx SINE Alu 1 294 -18 6254 159 11 136 chrY 2249818 2251008 -22462071 + MSTA-int LTR MaLR 441 1387 -193 779 184 0 0 chrY 2251009 2251150 -22461929 + L1PA15 LINE L1 6021 6161 -4 1241 252 68 43 chrY 2251459 2251947 -22461132 + L1ME2 LINE L1 4672 5171 -975 33 25 0 0 chrY 2253926 2253966 -22459113 + AT_rich Low_complexity Low_complexity 1 40 0 2509 248 73 29 chrY 2254311 2255104 -22457975 + L1ME2 LINE L1 5328 6155 -9 581 159 28 0 chrY 2255184 2255291 -22457788 - L1MA9 LINE L1 -174 6138 6029 * 698 185 135 0 chrY 2255287 2255328 -22457751 + L1MA9 LINE L1 6111 6145 -167 240 111 0 0 chrY 2255328 2255364 -22457715 + (CA)n Simple_repeat Simple_repeat 1 36 0 698 185 135 0 chrY 2255364 2255500 -22457579 + L1MA9 LINE L1 6145 6312 0 521 186 106 0 chrY 2255570 2255683 -22457396 + MER94 DNA DNA 6 130 -4 2226 96 7 0 chrY 2255868 2256160 -22456919 - AluSx SINE Alu -18 294 1 346 328 34 0 chrY 2256612 2256731 -22456348 + L3 LINE CR1 1454 1576 -1 25 0 0 0 chrY 2257225 2257250 -22455829 + AT_rich Low_complexity Low_complexity 1 25 0 29 28 0 0 chrY 2258747 2258783 -22454296 + AT_rich Low_complexity Low_complexity 1 36 0 1885 263 19 12 chrY 2258951 2259465 -22453614 - LTR40a LTR ERVL 0 519 2 21 0 0 0 chrY 2259737 2259758 -22453321 + AT_rich Low_complexity Low_complexity 1 21 0 1854 146 10 0 chrY 2260355 2260643 -22452436 - AluSx SINE Alu -21 291 1 224 316 0 0 chrY 2260998 2261055 -22452024 - L2 LINE L2 -224 3048 2992 300 374 73 45 chrY 2261266 2261715 -22451364 - L2 LINE L2 -635 2679 2218 205 328 93 40 chrY 2261741 2261988 -22451091 - L2 LINE L2 -1303 2011 1752 744 206 0 0 chrY 2262479 2262620 -22450459 + FLAM_C SINE Alu 1 141 -2 2916 289 25 20 chrY 2262633 2263428 -22449651 + L1PB1 LINE L1 1 799 -5988 3149 221 9 5 chrY 2263545 2264438 -22448641 + L1PB1 LINE L1 1634 2544 -4253 203 135 39 58 chrY 2264445 2264497 -22448582 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 5731 147 33 25 chrY 2264651 2265409 -22447670 + L1PB1 LINE L1 5157 5908 -894 3240 45 2 2 chrY 2265409 2265811 -22447268 + L1PA7 LINE L1 5753 6154 0 5731 147 33 25 chrY 2265811 2266677 -22446402 + L1PB1 LINE L1 5908 6802 0 345 320 26 33 chrY 2267653 2267806 -22445273 - MER5A DNA MER1_type -29 160 9 23 0 0 0 chrY 2268012 2268035 -22445044 + AT_rich Low_complexity Low_complexity 1 23 0 228 269 0 0 chrY 2268955 2269007 -22444072 + L1M4c LINE L1 32 83 -6301 2360 75 0 7 chrY 2269684 2269992 -22443087 + AluY SINE Alu 1 306 -5 180 0 0 0 chrY 2270052 2270072 -22443007 + (A)n Simple_repeat Simple_repeat 1 20 0 3346 269 38 23 chrY 2270072 2272657 -22440422 + L1M4c LINE L1 823 3547 -2835 7210 156 23 34 chrY 2272659 2274905 -22438174 + L1MA3 LINE L1 4033 6248 -293 189 0 0 0 chrY 2274905 2274926 -22438153 + (TGGGGG)n Simple_repeat Simple_repeat 3 23 0 7210 156 23 34 chrY 2274926 2275215 -22437864 + L1MA3 LINE L1 6248 6539 -2 255 61 0 0 chrY 2275978 2276011 -22437068 + (TTTTC)n Simple_repeat Simple_repeat 3 35 0 16689 171 32 15 chrY 2276178 2281155 -22431924 + L1PB1 LINE L1 3 4894 -1973 189 0 0 0 chrY 2281155 2281176 -22431903 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 16689 171 32 15 chrY 2281176 2281821 -22431258 + L1PB1 LINE L1 4894 5527 -1340 1600 129 20 109 chrY 2281821 2282169 -22430910 - AluYb8 SINE Alu -1 317 1 16689 171 32 15 chrY 2282169 2283287 -22429792 + L1PB1 LINE L1 5527 6860 -7 1119 158 10 0 chrY 2283296 2283492 -22429587 + L1MA4 LINE L1 5951 6148 -152 777 124 8 0 chrY 2283693 2283822 -22429257 + L1MA5 LINE L1 6160 6289 -11 22 0 0 0 chrY 2283850 2283872 -22429207 + AT_rich Low_complexity Low_complexity 1 22 0 675 236 70 118 chrY 2284708 2285277 -22427802 - MLT1F LTR MaLR 0 542 1 32 0 0 0 chrY 2286653 2286685 -22426394 + AT_rich Low_complexity Low_complexity 1 32 0 268 267 100 0 chrY 2287949 2288009 -22425070 - MIR3 SINE MIR -52 156 91 5891 162 57 3 chrY 2288290 2289355 -22423724 + Ricksha_b DNA DNA 1 1123 -131 6801 151 15 5 chrY 2289424 2291446 -22421633 - L1MA2 LINE L1 0 7723 5684 18061 187 36 19 chrY 2291450 2295195 -22417884 - L1MA2 LINE L1 -3732 3833 18 408 208 40 0 chrY 2295215 2295316 -22417763 + Ricksha_b DNA DNA 1539 1643 -8 276 293 54 42 chrY 2295326 2295493 -22417586 - MIR SINE MIR -16 246 78 34 24 0 0 chrY 2295736 2295777 -22417302 + AT_rich Low_complexity Low_complexity 1 41 0 73 23 0 0 chrY 2297340 2297427 -22415652 + AT_rich Low_complexity Low_complexity 1 87 0 1968 148 0 0 chrY 2297517 2297830 -22415249 - AluSx SINE Alu 0 313 1 1216 218 25 4 chrY 2297992 2298267 -22414812 - L1MD3 LINE L1 -313 7682 7402 537 226 0 32 chrY 2298267 2298391 -22414688 - MLT1F1 LTR MaLR -446 121 2 1222 255 8 21 chrY 2298394 2298767 -22414312 - L1MD3 LINE L1 -719 7276 6909 228 35 0 0 chrY 2298768 2298797 -22414282 + (TCCC)n Simple_repeat Simple_repeat 4 32 0 745 144 0 28 chrY 2298802 2298983 -22414096 + (TTCC)n Simple_repeat Simple_repeat 3 178 0 356 147 13 0 chrY 2298986 2299061 -22414018 + CT-rich Low_complexity Low_complexity 4 79 0 379 234 96 69 chrY 2299061 2299249 -22413830 - L1MC3 LINE L1 -1107 6678 6486 * 3019 266 70 33 chrY 2299235 2301504 -22411575 - L1MD3 LINE L1 -743 5403 3998 538 153 57 57 chrY 2301657 2301814 -22411265 - L1MC/D LINE L1 -724 5518 5362 5384 75 3 1 chrY 2301941 2302652 -22410427 + L1PA7 LINE L1 5439 6150 -4 5735 60 3 7 chrY 2304483 2305236 -22407843 + L1PA7 LINE L1 5405 6154 0 38 61 0 0 chrY 2305311 2305377 -22407702 + AT_rich Low_complexity Low_complexity 1 66 0 24 53 0 0 chrY 2305723 2305761 -22407318 + AT_rich Low_complexity Low_complexity 1 38 0 745 262 16 5 chrY 2305945 2306132 -22406947 - MER5A DNA MER1_type 0 189 1 319 264 157 0 chrY 2306625 2306746 -22406333 + MIR SINE MIR 120 259 -3 510 306 108 13 chrY 2306823 2307055 -22406024 + MIR SINE MIR 1 254 -8 2325 241 42 2 chrY 2307311 2307830 -22405249 + LTR9B LTR ERV1 105 644 0 267 54 0 0 chrY 2307943 2307980 -22405099 + (TG)n Simple_repeat Simple_repeat 2 38 0 346 357 51 0 chrY 2308669 2308826 -22404253 + MIR SINE MIR 98 262 0 568 335 45 0 chrY 2310305 2310484 -22402595 - MIR SINE MIR 0 262 76 3984 152 33 16 chrY 2313642 2313872 -22399207 - MER50 LTR ERV1 -23 711 486 2128 91 9 35 chrY 2313872 2314190 -22398889 - AluSx SINE Alu -2 310 1 3984 152 33 16 chrY 2314190 2314658 -22398421 - MER50 LTR ERV1 -248 486 1 2298 92 3 0 chrY 2315212 2315518 -22397561 + AluSg SINE Alu 1 307 -3 2040 96 7 18 chrY 2315744 2316026 -22397053 - AluSg SINE Alu -27 283 5 1033 96 7 0 chrY 2316029 2316165 -22396914 - AluSq/x SINE Alu -175 137 1 246 340 19 28 chrY 2316449 2316555 -22396524 + L3b LINE CR1 1392 1496 -87 352 153 0 0 chrY 2317669 2317728 -22395351 - L1M4 LINE L1 -2187 3959 3901 6057 97 16 3 chrY 2317728 2318804 -22394275 + L1PA13 LINE L1 5075 6162 -1 301 253 13 0 chrY 2319120 2319199 -22393880 + MER116 DNA Mariner 1 80 0 891 261 43 4 chrY 2319930 2320164 -22392915 + MIR SINE MIR 7 249 -13 21 36 0 0 chrY 2320164 2320192 -22392887 + AT_rich Low_complexity Low_complexity 1 28 0 329 178 68 0 chrY 2320263 2320336 -22392743 - L1ME2 LINE L1 -9 6155 6078 3887 119 58 80 chrY 2320537 2321328 -22391751 - LTR1 LTR ERV1 0 785 12 768 214 17 16 chrY 2321361 2321567 -22391512 - L1ME1 LINE L1 -252 5914 5732 868 152 72 72 chrY 2321578 2321815 -22391264 + MLT1B LTR MaLR 154 390 0 2204 288 93 16 chrY 2321954 2323596 -22389483 - L1M4 LINE L1 -1621 4525 2758 2219 237 44 4 chrY 2323641 2324144 -22388935 - Tigger7 DNA MER2_type -1921 566 44 22 70 0 0 chrY 2324516 2324559 -22388520 + AT_rich Low_complexity Low_complexity 1 43 0 1395 162 20 0 chrY 2324574 2324821 -22388258 - L1PA16 LINE L1 -6 6160 5909 367 353 85 5 chrY 2324950 2325174 -22387905 - L1MEc LINE L1 -5352 1044 803 1960 263 38 87 chrY 2325649 2326655 -22386424 - L1ME1 LINE L1 -19 6541 5583 552 107 0 0 chrY 2326658 2326742 -22386337 - L1PA10 LINE L1 0 6168 6085 11411 136 6 14 chrY 2326743 2328484 -22384595 - L1PA10 LINE L1 -180 5994 4278 2440 77 0 0 chrY 2328484 2328795 -22384284 + AluY SINE Alu 1 311 0 11411 136 6 14 chrY 2328795 2329656 -22383423 - L1PA10 LINE L1 -1896 4278 3412 4207 235 80 110 chrY 2329657 2331461 -22381618 - L1ME1 LINE L1 -951 5589 3733 817 238 6 11 chrY 2331461 2331642 -22381437 - FRAM SINE Alu 0 176 1 4207 235 80 110 chrY 2331642 2331659 -22381420 - L1ME1 LINE L1 -2807 3733 3717 186 43 0 0 chrY 2331659 2331682 -22381397 + (TG)n Simple_repeat Simple_repeat 2 24 0 4207 235 80 110 chrY 2331682 2331767 -22381312 - L1ME1 LINE L1 -2823 3717 3631 2223 106 0 0 chrY 2331767 2332060 -22381019 - AluSc SINE Alu -16 293 1 4207 235 80 110 chrY 2332060 2333278 -22379801 - L1ME1 LINE L1 -2909 3631 2415 6166 152 39 4 chrY 2333336 2334419 -22378660 - HSMAR2 DNA Mariner -2 1300 180 668 294 58 10 chrY 2334441 2334734 -22378345 - L1ME1 LINE L1 -4339 2201 1895 4237 187 57 16 chrY 2334737 2335706 -22377373 - L1MA8 LINE L1 -6 6285 5277 3705 233 24 3 chrY 2335697 2336696 -22376383 - L1MA8 LINE L1 -2709 3437 2418 * 15166 153 16 15 chrY 2387108 2389692 -22323387 - Tigger2 DNA MER2_type -130 2588 1 347 259 129 70 chrY 2390364 2390565 -22322514 + MIR SINE MIR 2 214 -48 21 0 0 0 chrY 2390747 2390768 -22322311 + AT_rich Low_complexity Low_complexity 1 21 0 2100 104 7 0 chrY 2390909 2391196 -22321883 - AluSp SINE Alu 0 313 25 2352 129 13 11 chrY 2391236 2391608 -22321471 + THE1C LTR MaLR 1 373 -2 217 222 0 0 chrY 2391755 2391800 -22321279 + (TGAA)n Simple_repeat Simple_repeat 4 48 0 180 274 123 27 chrY 2392181 2392254 -22320825 + L2 LINE L2 3229 3308 -5 21 0 0 0 chrY 2392380 2392401 -22320678 + AT_rich Low_complexity Low_complexity 1 21 0 369 0 0 0 chrY 2394055 2394096 -22318983 + (CA)n Simple_repeat Simple_repeat 2 42 0 720 240 37 70 chrY 2394398 2394640 -22318439 + MER21B LTR ERV1 1 234 -629 1596 245 34 32 chrY 2394678 2395115 -22317964 + MER21B LTR ERV1 321 758 -105 2269 85 0 52 chrY 2395313 2395641 -22317438 + AluSp SINE Alu 3 313 0 2030 158 31 6 chrY 2396004 2396359 -22316720 + THE1B LTR MaLR 1 364 0 4351 40 3 42 chrY 2397029 2397604 -22315475 + L1PA5 LINE L1 5602 6154 0 180 77 0 0 chrY 2398611 2398637 -22314442 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 16490 36 38 1 chrY 2398637 2401441 -22311638 - L1PA4 LINE L1 -16 6139 3229 2503 120 5 8 chrY 2401721 2402097 -22310982 - THE1C LTR MaLR 0 375 1 673 146 8 32 chrY 2402101 2402224 -22310855 - THE1-int LTR MaLR -387 1193 1074 1371 100 5 11 chrY 2402230 2402420 -22310659 - THE1C LTR MaLR -186 189 1 2203 148 14 0 chrY 2402424 2402769 -22310310 - THE1-int LTR MaLR -387 1193 844 205 264 216 16 chrY 2403104 2403229 -22309850 - MIR SINE MIR 0 262 113 22 35 0 0 chrY 2403425 2403454 -22309625 + AT_rich Low_complexity Low_complexity 1 29 0 1380 24 12 0 chrY 2403482 2403648 -22309431 + L1PA3 LINE L1 5985 6152 -3 368 312 40 0 chrY 2404120 2404245 -22308834 - MIR SINE MIR -4 258 129 26 0 0 0 chrY 2405067 2405093 -22307986 + AT_rich Low_complexity Low_complexity 1 26 0 25 65 0 0 chrY 2406041 2406087 -22306992 + AT_rich Low_complexity Low_complexity 1 46 0 1997 144 36 36 chrY 2406177 2406539 -22306540 - THE1B LTR MaLR -2 362 1 25 51 0 0 chrY 2406559 2406598 -22306481 + AT_rich Low_complexity Low_complexity 1 39 0 237 280 9 56 chrY 2407375 2407482 -22305597 + MIR SINE MIR 100 201 -61 24 32 0 0 chrY 2408566 2408597 -22304482 + AT_rich Low_complexity Low_complexity 1 31 0 281 204 11 11 chrY 2408648 2408758 -22304321 + (TTTAA)n Simple_repeat Simple_repeat 1 110 0 28 71 0 0 chrY 2408759 2408815 -22304264 + AT_rich Low_complexity Low_complexity 1 56 0 18210 202 15 14 chrY 2408860 2411424 -22301655 + L1PA16 LINE L1 2 2563 -4306 2499 61 0 3 chrY 2411424 2411719 -22301360 - AluY SINE Alu -17 294 1 18210 202 15 14 chrY 2411719 2412148 -22300931 + L1PA16 LINE L1 2563 2990 -3879 609 27 0 0 chrY 2412148 2412222 -22300857 + L1PA5 LINE L1 6076 6149 -5 18210 202 15 14 chrY 2412222 2412279 -22300800 + L1PA16 LINE L1 2990 3045 -3824 2286 110 0 16 chrY 2412279 2412597 -22300482 - AluSq SINE Alu 0 313 1 18210 202 15 14 chrY 2412597 2416394 -22296685 + L1PA16 LINE L1 3045 6860 -9 4291 135 27 10 chrY 2417408 2418119 -22294960 - Tigger1 DNA MER2_type 0 2418 1696 5351 159 41 21 chrY 2418134 2419127 -22293952 - Tigger1 DNA MER2_type -1405 1013 1 275 333 22 0 chrY 2419127 2419217 -22293862 - MIR SINE MIR -64 198 107 4940 142 14 10 chrY 2419274 2421178 -22291901 - L1PA15 LINE L1 0 6816 4884 9233 254 34 29 chrY 2421178 2424670 -22288409 - L1PA15 LINE L1 -3276 3521 3 207 0 0 0 chrY 2424682 2424705 -22288374 + (A)n Simple_repeat Simple_repeat 1 23 0 1293 201 109 10 chrY 2424710 2425023 -22288056 + MER2 DNA MER2_type 1 344 0 509 216 43 0 chrY 2425754 2425870 -22287209 - MIR SINE MIR -16 246 126 21 0 0 0 chrY 2425997 2426018 -22287061 + AT_rich Low_complexity Low_complexity 1 21 0 181 245 204 41 chrY 2426235 2426333 -22286746 + L2 LINE L2 2566 2679 -635 200 116 23 23 chrY 2426369 2426412 -22286667 + L2 LINE L2 3266 3308 -5 2016 98 0 0 chrY 2427031 2427306 -22285773 + L1P3 LINE L1 4 278 -6183 5545 74 0 8 chrY 2427306 2428045 -22285034 + L1PA8 LINE L1 5434 6166 -6 5579 162 16 2 chrY 2428049 2429186 -22283893 + L1MA4A LINE L1 5144 6296 -7 4033 200 24 72 chrY 2429215 2430150 -22282929 + L1MB3 LINE L1 4614 5423 -760 2320 231 60 50 chrY 2430150 2430831 -22282248 + MER76 LTR ERV 1 688 0 4033 200 24 72 chrY 2430831 2431556 -22281523 + L1MB3 LINE L1 5423 6181 -2 23 33 0 0 chrY 2431609 2431639 -22281440 + AT_rich Low_complexity Low_complexity 1 30 0 752 266 12 8 chrY 2431694 2431935 -22281144 + L1 LINE L1 4452 4693 -1453 351 221 53 0 chrY 2431934 2432029 -22281050 + L1 LINE L1 4422 4521 -1625 * 842 298 24 60 chrY 2432096 2432509 -22280570 - MLT1I LTR MaLR 0 409 12 880 240 38 116 chrY 2432551 2432947 -22280132 - MLT1A1 LTR MaLR 0 365 1 190 307 175 9 chrY 2432963 2433077 -22280002 - MIR SINE MIR -49 213 81 42729 31 22 1 chrY 2434387 2440412 -22272667 - L1HS LINE L1 0 6155 4 3088 149 39 8 chrY 2440412 2440988 -22272091 - MER4B LTR ERV1 -20 759 1 192 308 65 56 chrY 2441369 2441476 -22271603 - L2 LINE L2 -158 3114 3007 27 29 0 0 chrY 2442537 2442571 -22270508 + AT_rich Low_complexity Low_complexity 1 34 0 190 286 41 0 chrY 2443026 2443075 -22270004 - L2 LINE L2 -3 3269 3219 29 0 0 0 chrY 2443521 2443550 -22269529 + AT_rich Low_complexity Low_complexity 1 29 0 40 67 0 0 chrY 2443644 2443719 -22269360 + AT_rich Low_complexity Low_complexity 1 75 0 23 78 0 0 chrY 2443753 2443804 -22269275 + AT_rich Low_complexity Low_complexity 1 51 0 396 0 0 0 chrY 2443833 2443877 -22269202 + (TA)n Simple_repeat Simple_repeat 1 44 0 284 288 161 8 chrY 2444487 2444605 -22268474 - MIR SINE MIR 0 262 127 1969 111 0 0 chrY 2445599 2445860 -22267219 - AluSx SINE Alu -10 302 42 4285 118 46 1 chrY 2445999 2446762 -22266317 + L1PBa LINE L1 1614 2410 -4453 14990 177 26 33 chrY 2446768 2446867 -22266212 - L1M1 LINE L1 -4462 3103 3005 1512 141 0 8 chrY 2446867 2447101 -22265978 - AluSg/x SINE Alu 0 310 79 14990 177 26 33 chrY 2447101 2447845 -22265234 - L1M1 LINE L1 -4560 3005 2257 2257 67 3 18 chrY 2447845 2448129 -22264950 - AluY SINE Alu -15 296 17 14990 177 26 33 chrY 2448129 2450402 -22262677 - L1M1 LINE L1 -5308 2257 8 306 269 186 14 chrY 2450580 2450725 -22262354 + MER5A DNA MER1_type 9 178 -11 843 227 152 28 chrY 2451007 2451329 -22261750 + MLT1D LTR MaLR 127 488 -17 201 208 0 21 chrY 2451436 2451484 -22261595 + (TAA)n Simple_repeat Simple_repeat 2 48 0 210 37 0 0 chrY 2451678 2451705 -22261374 + (A)n Simple_repeat Simple_repeat 1 27 0 257 264 109 9 chrY 2451821 2451931 -22261148 + L2 LINE L2 2933 3053 -219 830 282 53 8 chrY 2452233 2452478 -22260601 - MIR SINE MIR 0 262 7 242 270 217 26 chrY 2453014 2453129 -22259950 + MIR3 SINE MIR 20 156 -52 1361 36 0 6 chrY 2454834 2455000 -22258079 - L1PA4 LINE L1 -8 6147 5983 249 98 0 0 chrY 2455459 2455500 -22257579 + (GA)n Simple_repeat Simple_repeat 2 42 0 239 352 11 0 chrY 2456697 2456785 -22256294 - MIR3 SINE MIR -17 191 103 536 248 163 33 chrY 2456797 2456950 -22256129 + MER5A DNA MER1_type 16 188 -1 1113 163 28 23 chrY 2457605 2457820 -22255259 + MER20 DNA MER1_type 3 218 -1 41780 40 1 2 chrY 2458712 2464871 -22248208 + L1PA3 LINE L1 2 6155 0 345 47 0 0 chrY 2465784 2465827 -22247252 + (TA)n Simple_repeat Simple_repeat 2 44 0 2714 26 0 3 chrY 2466007 2466318 -22246761 - AluY SINE Alu -1 310 1 2208 212 47 21 chrY 2467118 2467651 -22245428 - MLT1E2 LTR MaLR 0 626 80 264 314 12 12 chrY 2467609 2467695 -22245384 - MLT2D LTR ERVL -289 125 41 * 241 333 39 0 chrY 2467795 2467873 -22245206 - MER91A DNA MER1_type -115 81 1 266 374 123 19 chrY 2468957 2469112 -22243967 + MIR3 SINE MIR 5 175 -33 296 307 68 43 chrY 2469232 2469416 -22243663 + MIR3 SINE MIR 33 216 -31 256 245 18 25 chrY 2469488 2469583 -22243496 + MIR3 SINE MIR 66 160 -48 204 40 0 0 chrY 2470637 2470662 -22242417 + (TA)n Simple_repeat Simple_repeat 1 25 0 2411 145 27 44 chrY 2470852 2471474 -22241605 + MER4B LTR ERV1 3 779 0 968 210 48 117 chrY 2471803 2472385 -22240694 + MER34 LTR ERV1 1 542 0 298 253 23 0 chrY 2472945 2473032 -22240047 + MER103 DNA DNA 22 110 -56 3853 137 16 3 chrY 2473968 2474595 -22238484 - MER41B LTR ERV1 0 635 1 786 208 74 0 chrY 2475599 2475830 -22237249 - MER69 DNA AcHobo -1 2525 2278 458 217 0 0 chrY 2475837 2475929 -22237150 - Tigger7 DNA MER2_type -29 2462 2371 384 165 13 0 chrY 2475920 2475999 -22237080 - MER69 DNA AcHobo -235 2291 2212 * 436 187 0 0 chrY 2475999 2476074 -22237005 - MER69 DNA AcHobo -2450 76 2 201 184 41 0 chrY 2476486 2476535 -22236544 + L2 LINE L2 3263 3313 0 273 352 95 11 chrY 2476674 2476853 -22236226 - MIR SINE MIR -34 228 35 486 333 27 31 chrY 2481073 2481198 -22231881 - MIR SINE MIR -29 233 109 979 171 114 30 chrY 2481198 2481358 -22231721 - MER33 DNA MER1_type -2261 324 179 204 40 0 0 chrY 2481358 2481383 -22231696 + (TTATA)n Simple_repeat Simple_repeat 5 29 0 1598 216 3 0 chrY 2481384 2481667 -22231412 - AluJo SINE Alu -28 284 1 979 171 114 30 chrY 2481667 2481683 -22231396 - MER33 DNA MER1_type -2406 179 166 297 51 0 0 chrY 2481683 2481722 -22231357 + (TG)n Simple_repeat Simple_repeat 1 39 0 979 171 114 30 chrY 2481722 2481841 -22231238 - MER33 DNA MER1_type -2419 166 1 486 333 27 31 chrY 2481841 2481937 -22231142 - MIR SINE MIR -153 109 13 364 236 157 39 chrY 2482874 2483052 -22230027 + MIR SINE MIR 49 247 -15 378 331 27 14 chrY 2483453 2483601 -22229478 + MIR SINE MIR 47 196 -66 312 279 49 103 chrY 2484744 2484948 -22228131 + L1M2 LINE L1 821 1013 -5836 342 0 0 0 chrY 2484988 2485026 -22228053 + (CA)n Simple_repeat Simple_repeat 1 38 0 276 111 0 0 chrY 2488027 2488072 -22225007 + (TG)n Simple_repeat Simple_repeat 2 46 0 22 0 0 0 chrY 2489865 2489887 -22223192 + AT_rich Low_complexity Low_complexity 1 22 0 321 302 26 17 chrY 2490238 2490354 -22222725 - L2 LINE L2 -10 3303 3187 23 54 0 0 chrY 2493099 2493136 -22219943 + AT_rich Low_complexity Low_complexity 1 37 0 373 253 44 0 chrY 2493989 2494080 -22218999 + MIR3 SINE MIR 86 180 -28 186 244 12 85 chrY 2494279 2494361 -22218718 - L2 LINE L2 -97 3216 3141 432 219 10 0 chrY 2494421 2494517 -22218562 - MIR3 SINE MIR -11 197 101 24 0 0 0 chrY 2494882 2494906 -22218173 + AT_rich Low_complexity Low_complexity 1 24 0 2311 83 0 13 chrY 2495396 2495709 -22217370 + AluSc SINE Alu 1 309 0 436 264 189 7 chrY 2496330 2496478 -22216601 - MER5A DNA MER1_type -2 187 13 2253 117 117 5 chrY 2497684 2498069 -22215010 - MSTA LTR MaLR 0 428 1 198 0 0 0 chrY 2498142 2498164 -22214915 + (T)n Simple_repeat Simple_repeat 1 22 0 2339 39 42 0 chrY 2498325 2498610 -22214469 - AluY SINE Alu -14 297 1 305 280 48 32 chrY 2499574 2499699 -22213380 - MIR SINE MIR -71 191 65 25 65 0 0 chrY 2499791 2499837 -22213242 + AT_rich Low_complexity Low_complexity 1 46 0 188 260 27 82 chrY 2500724 2500797 -22212282 - MIR SINE MIR -67 141 73 2198 120 22 33 chrY 2501222 2501590 -22211489 + THE1B LTR MaLR 1 364 0 332 184 81 14 chrY 2501737 2501835 -22211244 - MIR SINE MIR -100 108 1 254 329 128 34 chrY 2503247 2503396 -22209683 - MIR SINE MIR -91 171 9 23 86 0 0 chrY 2503397 2503455 -22209624 + AT_rich Low_complexity Low_complexity 1 58 0 1434 91 0 0 chrY 2504549 2504736 -22208343 + U2 snRNA snRNA 1 187 -1 2480 80 0 0 chrY 2504763 2505074 -22208005 + AluSx SINE Alu 1 311 -1 29 84 0 0 chrY 2505386 2505457 -22207622 + AT_rich Low_complexity Low_complexity 1 71 0 1955 122 0 14 chrY 2506715 2507011 -22206068 + AluSx SINE Alu 1 292 -20 1808 145 17 7 chrY 2507815 2508111 -22204968 + AluJb SINE Alu 2 300 -12 344 208 14 0 chrY 2509603 2509675 -22203404 - MER116 DNA Mariner -4 76 4 241 121 0 0 chrY 2509858 2509891 -22203188 + U2 snRNA snRNA 1 33 -155 655 322 89 13 chrY 2510428 2510664 -22202415 + MIR SINE MIR 9 262 0 26 30 0 0 chrY 2511289 2511322 -22201757 + AT_rich Low_complexity Low_complexity 1 33 0 1429 199 0 37 chrY 2512450 2512746 -22200333 + AluJo SINE Alu 1 285 -27 1550 191 0 16 chrY 2513962 2514266 -22198813 + AluJo SINE Alu 1 299 -13 23 0 0 0 chrY 2514914 2514937 -22198142 + AT_rich Low_complexity Low_complexity 1 23 0 2357 90 0 0 chrY 2515116 2515416 -22197663 + AluSg SINE Alu 1 300 -10 1056 148 64 35 chrY 2516507 2516710 -22196369 - MER3 DNA MER1_type 0 209 1 26 0 0 0 chrY 2519039 2519065 -22194014 + AT_rich Low_complexity Low_complexity 1 26 0 24 0 0 0 chrY 2521099 2521123 -22191956 + AT_rich Low_complexity Low_complexity 1 24 0 23 33 0 0 chrY 2521261 2521291 -22191788 + AT_rich Low_complexity Low_complexity 1 30 0 430 277 37 41 chrY 2521618 2521776 -22191303 - MIR3 SINE MIR -9 199 41 901 223 59 25 chrY 2521889 2522091 -22190988 - MIR SINE MIR -31 231 23 24 0 0 0 chrY 2522099 2522123 -22190956 + AT_rich Low_complexity Low_complexity 1 24 0 2013 90 0 0 chrY 2522787 2523042 -22190037 + AluSx SINE Alu 28 282 -30 722 253 56 5 chrY 2524437 2524635 -22188444 + MER3 DNA MER1_type 2 209 0 2147 92 20 14 chrY 2525331 2525625 -22187454 + AluY SINE Alu 3 298 -13 22 0 0 0 chrY 2526244 2526266 -22186813 + AT_rich Low_complexity Low_complexity 1 22 0 192 158 0 0 chrY 2526540 2526578 -22186501 + T-rich Low_complexity Low_complexity 1 38 0 42404 37 21 1 chrY 2526581 2532613 -22180466 - L1PA3 LINE L1 0 6155 1 5729 119 35 3 chrY 2533373 2534980 -22178099 - L1PA14 LINE L1 -2 6159 4522 2067 58 0 4 chrY 2535031 2535290 -22177789 - AluY SINE Alu -9 302 45 23 0 0 0 chrY 2536638 2536661 -22176418 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chrY 2538496 2538524 -22174555 + AT_rich Low_complexity Low_complexity 1 28 0 464 233 0 0 chrY 2538677 2538763 -22174316 + L2 LINE L2 3225 3310 -3 4880 40 0 5 chrY 2538961 2539554 -22173525 + L1PA5 LINE L1 5565 6154 0 1779 68 24 8 chrY 2539748 2539997 -22173082 - L1PA13 LINE L1 0 6163 5911 316 343 98 63 chrY 2541450 2541879 -22171200 - L3 LINE CR1 -2 1575 1132 21 0 0 0 chrY 2542030 2542051 -22171028 + AT_rich Low_complexity Low_complexity 1 21 0 685 81 0 10 chrY 2544188 2544287 -22168792 + L1M1 LINE L1 5505 5602 -700 213 362 76 19 chrY 2544371 2544476 -22168603 + MIR SINE MIR 36 146 -62 608 211 113 36 chrY 2544649 2544843 -22168236 + MER3 DNA MER1_type 1 209 0 300 357 18 9 chrY 2546009 2546121 -22166958 - MIR SINE MIR -65 143 31 1768 114 81 44 chrY 2546214 2546512 -22166567 + AluSx SINE Alu 3 311 -1 315 0 0 0 chrY 2550140 2550175 -22162904 + (TG)n Simple_repeat Simple_repeat 2 36 0 1797 154 10 35 chrY 2550178 2550490 -22162589 - AluSx SINE Alu -8 304 1 216 0 0 0 chrY 2551174 2551198 -22161881 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 24 32 0 0 chrY 2551513 2551544 -22161535 + AT_rich Low_complexity Low_complexity 1 31 0 2479 52 0 3 chrY 2553204 2553512 -22159567 + AluY SINE Alu 1 307 -4 333 0 0 0 chrY 2554016 2554053 -22159026 + (TG)n Simple_repeat Simple_repeat 2 38 0 820 215 0 0 chrY 2554058 2554216 -22158863 - FAM SINE Alu -17 158 1 1067 97 13 13 chrY 2555084 2555239 -22157840 - AluY SINE Alu -4 307 153 1275 132 4 22 chrY 2556169 2556396 -22156683 - L1PA14 LINE L1 -1 6160 5938 27 29 0 0 chrY 2558115 2558149 -22154930 + AT_rich Low_complexity Low_complexity 1 34 0 758 100 0 0 chrY 2558366 2558476 -22154603 - L1MA3 LINE L1 0 6305 6196 2419 76 0 3 chrY 2558908 2559211 -22153868 - AluSq SINE Alu -11 302 1 941 204 5 46 chrY 2559515 2559711 -22153368 - MER20 DNA MER1_type -1 218 31 9038 150 13 5 chrY 2560754 2563358 -22149721 - L1MA2 LINE L1 0 7723 5098 12382 136 11 13 chrY 2563361 2563900 -22149179 - L1PA10 LINE L1 -16 6152 5613 2368 111 17 14 chrY 2563900 2564261 -22148818 - THE1B LTR MaLR 0 364 3 10048 122 14 30 chrY 2564263 2565870 -22147209 - THE1B-int LTR MaLR 0 1580 1 12382 136 11 13 chrY 2565870 2568229 -22144850 - L1PA10 LINE L1 -556 5612 3279 1393 267 38 45 chrY 2568231 2568910 -22144169 - L1P3 LINE L1 -5088 787 2 14270 188 30 15 chrY 2568935 2571253 -22141826 - L1MA2 LINE L1 -2449 5116 2834 297 0 0 0 chrY 2571253 2571286 -22141793 + (TG)n Simple_repeat Simple_repeat 2 34 0 14270 188 30 15 chrY 2571286 2573705 -22139374 - L1MA2 LINE L1 -4731 2834 15 558 351 12 0 chrY 2576251 2576419 -22136660 + MIR3 SINE MIR 30 199 -9 190 315 0 19 chrY 2579341 2579395 -22133684 - L2 LINE L2 0 3272 3220 780 237 9 24 chrY 2580087 2580298 -22132781 + MER3 DNA MER1_type 2 209 0 345 47 0 0 chrY 2581907 2581950 -22131129 + (TG)n Simple_repeat Simple_repeat 2 44 0 2393 50 3 31 chrY 2582166 2582486 -22130593 - AluY SINE Alu 0 311 1 186 103 0 0 chrY 2582618 2582647 -22130432 + (A)n Simple_repeat Simple_repeat 1 29 0 1547 133 0 27 chrY 2583024 2583287 -22129792 + L1PB1 LINE L1 5895 6150 -1 378 335 73 43 chrY 2583366 2583530 -22129549 - MIR3 SINE MIR -10 198 30 38 39 0 0 chrY 2583601 2583653 -22129426 + AT_rich Low_complexity Low_complexity 1 52 0 183 80 0 0 chrY 2585748 2585773 -22127306 + (GAA)n Simple_repeat Simple_repeat 1 25 0 26 30 0 0 chrY 2588355 2588388 -22124691 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chrY 2589265 2589286 -22123793 + AT_rich Low_complexity Low_complexity 1 21 0 2510 44 0 0 chrY 2590434 2590728 -22122351 + AluY SINE Alu 1 294 -17 2446 80 0 3 chrY 2590818 2591131 -22121948 + AluSx SINE Alu 1 312 0 2630 36 0 0 chrY 2593251 2593558 -22119521 + AluY SINE Alu 1 307 -4 22 115 0 0 chrY 2593738 2593851 -22119228 + AT_rich Low_complexity Low_complexity 1 113 0 2586 51 0 0 chrY 2593939 2594250 -22118829 + AluY SINE Alu 1 311 0 1675 157 0 33 chrY 2595623 2595922 -22117157 + AluSx SINE Alu 1 289 -23 24 0 0 0 chrY 2595922 2595946 -22117133 + AT_rich Low_complexity Low_complexity 1 24 0 27 0 0 0 chrY 2596452 2596479 -22116600 + AT_rich Low_complexity Low_complexity 1 27 0 2006 112 22 0 chrY 2596569 2596871 -22116208 - AluSx SINE Alu 0 308 1 21 36 0 0 chrY 2597946 2597974 -22115105 + AT_rich Low_complexity Low_complexity 1 28 0 183 80 0 0 chrY 2599191 2599216 -22113863 + (A)n Simple_repeat Simple_repeat 1 25 0 252 0 0 0 chrY 2599271 2599299 -22113780 + (TG)n Simple_repeat Simple_repeat 2 29 0 232 348 135 23 chrY 2599379 2599822 -22113257 + L2 LINE L2 2438 2930 -384 918 54 0 0 chrY 2599956 2600068 -22113011 - AluSx SINE Alu -7 302 191 981 100 0 7 chrY 2600071 2600211 -22112868 - AluSx SINE Alu -174 139 1 756 21 0 0 chrY 2600607 2600700 -22112379 - AluY SINE Alu -2 309 217 2676 26 0 0 chrY 2601207 2601513 -22111566 - AluY SINE Alu -5 306 1 421 182 64 11 chrY 2603291 2603571 -22109508 + (TA)n Simple_repeat Simple_repeat 1 295 0 1573 167 28 24 chrY 2603714 2604001 -22109078 - AluJb SINE Alu -24 288 1 346 218 10 89 chrY 2604125 2604226 -22108853 - MIR3 SINE MIR -18 190 98 217 329 38 0 chrY 2604214 2604293 -22108786 - MIR SINE MIR -3 259 178 * 266 241 0 0 chrY 2605445 2605503 -22107576 - L2 LINE L2 -4 3268 3211 230 350 160 5 chrY 2605534 2605728 -22107351 + MIR SINE MIR 28 251 -11 306 243 90 36 chrY 2605737 2605848 -22107231 - MIR SINE MIR -56 206 90 250 365 39 10 chrY 2606167 2606271 -22106808 - MIR SINE MIR -72 136 30 294 266 40 65 chrY 2606390 2606514 -22106565 + MIR SINE MIR 30 150 -112 2206 149 61 28 chrY 2606601 2607105 -22105974 - MLT2A2 LTR ERVL -8 546 5 7340 97 10 5 chrY 2607109 2608172 -22104907 - HERVL-A2 LTR ERVL 0 5654 4545 367 351 34 13 chrY 2608576 2608792 -22104287 + MIR SINE MIR 18 241 -21 248 333 46 32 chrY 2608810 2609000 -22104079 - MIR SINE MIR -66 196 5 23 0 0 0 chrY 2609330 2609353 -22103726 + AT_rich Low_complexity Low_complexity 1 23 0 698 339 86 29 chrY 2609779 2610479 -22102600 + L2 LINE L2 1806 2545 -769 443 325 110 18 chrY 2610485 2610713 -22102366 - MIR SINE MIR 0 262 14 387 382 27 23 chrY 2610733 2610992 -22102087 + L2 LINE L2 2560 2819 -495 198 209 0 0 chrY 2611213 2611256 -22101823 + (TG)n Simple_repeat Simple_repeat 2 44 0 488 81 0 70 chrY 2611741 2611827 -22101252 - MADE1 DNA Mariner 0 80 1 546 222 25 49 chrY 2612064 2612226 -22100853 - L1ME4a LINE L1 -4 6117 5960 433 267 74 11 chrY 2612229 2612405 -22100674 - L1ME4a LINE L1 -264 5857 5671 1187 189 0 5 chrY 2612639 2612892 -22100187 - AluJb SINE Alu 0 312 89 298 325 162 7 chrY 2613997 2614151 -22098928 - MER5B DNA MER1_type 0 178 1 192 40 0 0 chrY 2614322 2614347 -22098732 + (TTAA)n Simple_repeat Simple_repeat 3 27 0 315 49 0 0 chrY 2614912 2614953 -22098126 + (CA)n Simple_repeat Simple_repeat 2 42 0 288 0 0 0 chrY 2614952 2614984 -22098095 + (GA)n Simple_repeat Simple_repeat 2 33 0 * 25 51 0 0 chrY 2614990 2615029 -22098050 + AT_rich Low_complexity Low_complexity 1 39 0 26 30 0 0 chrY 2615060 2615093 -22097986 + AT_rich Low_complexity Low_complexity 1 33 0 3146 89 2 0 chrY 2615173 2615612 -22097467 - L1PA13 LINE L1 -7 6156 5717 2768 124 2 47 chrY 2615612 2616073 -22097006 + L1P4 LINE L1 5041 5471 -697 2034 119 3 3 chrY 2616073 2616367 -22096712 + AluSx SINE Alu 1 294 -18 2768 124 2 47 chrY 2616367 2616573 -22096506 + L1P4 LINE L1 5471 5685 -483 23 0 0 0 chrY 2617137 2617160 -22095919 + AT_rich Low_complexity Low_complexity 1 23 0 1402 94 70 4 chrY 2617318 2617562 -22095517 - L1MA9 LINE L1 0 6312 6053 2540 118 5 19 chrY 2618861 2619284 -22093795 - L1MA3 LINE L1 0 6305 5889 4536 176 27 8 chrY 2619284 2620199 -22092880 - L1 LINE L1 -1445 4701 3769 14240 204 21 9 chrY 2620221 2625549 -22087530 + L1PBa LINE L1 1 5531 -1331 688 188 30 0 chrY 2625643 2625776 -22087303 - MLT1E2 LTR MaLR 0 626 490 6018 14 1 0 chrY 2626319 2627009 -22086070 - L1HS LINE L1 0 6155 5465 5313 19 10 0 chrY 2626999 2627732 -22085347 + L1P1 LINE L1 4753 5489 -666 * 4459 136 26 11 chrY 2630118 2630882 -22082197 - L1MC1 LINE L1 0 6333 5558 662 269 151 9 chrY 2631146 2631358 -22081721 - MIR SINE MIR 0 262 21 1903 125 33 111 chrY 2631400 2631768 -22081311 + Charlie3 DNA MER1_type 1 2712 0 902 107 23 0 chrY 2632057 2632188 -22080891 + HERVL-A2 LTR ERVL 5520 5653 -1 2077 160 49 31 chrY 2632189 2632732 -22080347 + MLT2A2 LTR ERVL 1 554 0 1865 100 55 17 chrY 2632737 2633027 -22080052 + L1PA16 LINE L1 5864 6164 -2 1590 239 100 28 chrY 2633049 2633510 -22079569 + MLT1D LTR MaLR 12 505 0 1964 163 22 8 chrY 2634049 2634410 -22078669 - MER47A DNA MER2_type 0 366 1 1182 241 14 58 chrY 2634982 2635035 -22078044 - MLT2D LTR ERVL 0 414 360 408 20 0 0 chrY 2635035 2635084 -22077995 + (CA)n Simple_repeat Simple_repeat 2 50 0 1182 241 14 58 chrY 2635084 2635378 -22077701 - MLT2D LTR ERVL -54 360 82 2095 143 40 3 chrY 2635657 2636034 -22077045 - L1MA5A LINE L1 -5 6292 5902 900 274 46 0 chrY 2636269 2636488 -22076591 - MIR SINE MIR -29 233 5 306 243 97 29 chrY 2636552 2636655 -22076424 - MIR3 SINE MIR -5 203 94 22 88 0 0 chrY 2638042 2638099 -22074980 + AT_rich Low_complexity Low_complexity 1 57 0 21 71 0 0 chrY 2638205 2638247 -22074832 + AT_rich Low_complexity Low_complexity 1 42 0 723 274 104 9 chrY 2638303 2638533 -22074546 - MIR SINE MIR -9 253 2 347 155 0 14 chrY 2639470 2639541 -22073538 + (TA)n Simple_repeat Simple_repeat 2 71 0 311 65 22 0 chrY 2640100 2640146 -22072933 + (TG)n Simple_repeat Simple_repeat 1 47 0 433 329 128 9 chrY 2640354 2640573 -22072506 + L3 LINE CR1 1331 1575 -2 2400 108 13 13 chrY 2640781 2641160 -22071919 - L1PA11 LINE L1 -3 6171 5793 358 321 9 32 chrY 2641296 2641594 -22071485 + GA-rich Low_complexity Low_complexity 1 291 0 296 111 19 0 chrY 2641613 2641667 -22071412 + (TG)n Simple_repeat Simple_repeat 1 55 0 3137 147 66 9 chrY 2644551 2645128 -22067951 - MER4B LTR ERV1 0 610 1 491 0 17 0 chrY 2645498 2645557 -22067522 + (TATAA)n Simple_repeat Simple_repeat 5 64 0 41 72 0 0 chrY 2645848 2645931 -22067148 + AT_rich Low_complexity Low_complexity 1 83 0 4754 257 62 56 chrY 2647194 2648936 -22064143 + L1MEc LINE L1 22 1751 -4645 1984 153 110 15 chrY 2648936 2649327 -22063752 + MSTA LTR MaLR 1 428 0 4754 257 62 56 chrY 2649327 2649517 -22063562 + L1MEc LINE L1 1751 1938 -4458 1455 194 25 18 chrY 2649517 2649800 -22063279 - AluJb SINE Alu -25 287 3 4754 257 62 56 chrY 2649800 2649977 -22063102 + L1MEc LINE L1 1938 2146 -4250 777 109 0 0 chrY 2649979 2650089 -22062990 + L1MA1 LINE L1 6099 6208 -94 4558 262 44 39 chrY 2650091 2651879 -22061200 + L1MEc LINE L1 2153 3910 -2305 3114 121 32 26 chrY 2651879 2652410 -22060669 + L1MC1 LINE L1 5798 6331 -2 4558 262 44 39 chrY 2652410 2652657 -22060422 + L1MEc LINE L1 3910 4154 -2061 405 0 0 0 chrY 2652991 2653036 -22060043 + (TG)n Simple_repeat Simple_repeat 2 46 0 486 0 0 0 chrY 2654016 2654070 -22059009 + (TA)n Simple_repeat Simple_repeat 2 55 0 23 33 0 0 chrY 2654665 2654695 -22058384 + AT_rich Low_complexity Low_complexity 1 30 0 354 297 54 9 chrY 2655136 2655247 -22057832 - MIR SINE MIR -76 186 71 23 54 0 0 chrY 2655308 2655345 -22057734 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chrY 2655638 2655659 -22057420 + AT_rich Low_complexity Low_complexity 1 21 0 1663 175 83 65 chrY 2657565 2658023 -22055056 - MER31B LTR ERV1 0 466 1 291 352 82 0 chrY 2658518 2658677 -22054402 + MIR3 SINE MIR 32 203 -5 2436 119 13 11 chrY 2659182 2659560 -22053519 - L1PB3 LINE L1 0 6154 5776 439 68 0 27 chrY 2659574 2659648 -22053431 + (TA)n Simple_repeat Simple_repeat 1 72 0 597 76 0 0 chrY 2659655 2659734 -22053345 - L1PB3 LINE L1 -366 5788 5710 382 250 76 0 chrY 2659781 2659873 -22053206 + L2 LINE L2 3179 3277 -36 7910 17 0 0 chrY 2660847 2661937 -22051142 - L1HS LINE L1 0 6155 5066 4880 102 20 12 chrY 2662720 2663471 -22049608 + L1MA1 LINE L1 5542 6298 -4 6185 102 12 1 chrY 2664086 2665544 -22047535 - L1PA11 LINE L1 0 6174 4705 9914 228 22 15 chrY 2665548 2668915 -22044164 - L1PA12 LINE L1 -3121 4463 9 4399 174 72 31 chrY 2669279 2669805 -22043274 - L1MA9 LINE L1 0 6312 5809 225 0 0 0 chrY 2669805 2669830 -22043249 + (TTCA)n Simple_repeat Simple_repeat 4 28 0 4399 174 72 31 chrY 2669830 2670544 -22042535 - L1MA9 LINE L1 -503 5809 5005 2082 136 3 0 chrY 2670544 2670852 -22042227 - AluSx SINE Alu -3 309 1 4399 174 72 31 chrY 2670852 2671168 -22041911 - L1MA9 LINE L1 -1307 5005 4703 4793 180 39 8 chrY 2671169 2671836 -22041243 + L1 LINE L1 3695 4340 -1806 2632 95 16 3 chrY 2671836 2672205 -22040874 - THE1C LTR MaLR -1 374 1 9654 142 11 32 chrY 2672205 2673819 -22039260 - THE1C-int LTR MaLR 0 1580 1 2635 117 0 3 chrY 2673819 2674195 -22038884 - THE1C LTR MaLR 0 375 1 4793 180 39 8 chrY 2674195 2674498 -22038581 + L1 LINE L1 4339 4697 -1449 2342 174 33 31 chrY 2675980 2676434 -22036645 - LOR1b LTR ERV1 -6 455 1 1769 58 8 8 chrY 2676550 2676790 -22036289 + L1PA6 LINE L1 5912 6151 -3 22 0 0 0 chrY 2676864 2676886 -22036193 + AT_rich Low_complexity Low_complexity 1 22 0 2260 90 0 27 chrY 2676933 2677267 -22035812 - L1PA8 LINE L1 0 6172 5848 2077 111 17 54 chrY 2677383 2677733 -22035346 + MER1B DNA MER1_type 1 337 0 215 284 136 0 chrY 2678038 2678126 -22034953 - MIR SINE MIR -111 151 52 224 360 61 0 chrY 2678531 2678645 -22034434 - MIR SINE MIR -67 141 21 1763 166 13 3 chrY 2679628 2679935 -22033144 + AluJo SINE Alu 2 311 -1 398 277 51 0 chrY 2679952 2680089 -22032990 + MIR SINE MIR 10 153 -109 704 139 61 0 chrY 2680089 2680204 -22032875 - LTR12 LTR ERV1 -234 480 359 350 210 0 0 chrY 2680204 2680285 -22032794 - LTR30 LTR ERV1 -98 624 544 1675 71 6 166 chrY 2680288 2680614 -22032465 - LTR12 LTR ERV1 -440 274 1 221 303 176 0 chrY 2680784 2680903 -22032176 + MIR SINE MIR 120 259 -3 778 161 54 0 chrY 2681896 2682045 -22031034 + L1MA8 LINE L1 5968 6124 -167 * 5511 23 2 10 chrY 2682038 2682903 -22030176 - L1PA2 LINE L1 -588 5567 4712 5297 66 3 17 chrY 2682865 2683617 -22029462 + L1PA2 LINE L1 5555 6260 -31 * 2438 89 0 0 chrY 2683617 2683921 -22029158 - AluSx SINE Alu -8 304 1 5297 66 3 17 chrY 2683921 2683952 -22029127 + L1PA2 LINE L1 6260 6290 -1 24 0 0 0 chrY 2684074 2684098 -22028981 + AT_rich Low_complexity Low_complexity 1 24 0 2939 266 88 27 chrY 2684368 2684752 -22028327 - L2 LINE L2 -214 3099 2740 2290 88 10 0 chrY 2684752 2685060 -22028019 - AluSp SINE Alu -2 311 1 2939 266 88 27 chrY 2685060 2685790 -22027289 - L2 LINE L2 -573 2740 1922 1129 167 0 0 chrY 2686056 2686242 -22026837 - AluJb SINE Alu -8 304 119 399 331 42 83 chrY 2688239 2688599 -22024480 + L2 LINE L2 2927 3271 -1 559 281 2 0 chrY 2689485 2689625 -22023454 - MIR SINE MIR -66 142 1 1142 152 193 16 chrY 2690499 2690742 -22022337 - AluJo SINE Alu -16 286 1 25 0 0 0 chrY 2690946 2690971 -22022108 + AT_rich Low_complexity Low_complexity 1 25 0 526 155 6 39 chrY 2690975 2691156 -22021923 + (TA)n Simple_repeat Simple_repeat 1 175 0 1188 124 10 36 chrY 2691619 2691813 -22021266 - THE1B LTR MaLR 0 364 176 195 259 35 71 chrY 2693392 2693477 -22019602 - L3 LINE CR1 -622 955 874 1098 131 33 25 chrY 2693600 2693816 -22019263 - THE1B LTR MaLR -161 214 1 1334 298 90 52 chrY 2694408 2695227 -22017852 - L1MEd LINE L1 -5267 852 3 2103 95 25 0 chrY 2695262 2695536 -22017543 + AluSg SINE Alu 1 317 0 230 0 83 0 chrY 2695536 2695572 -22017507 + (TAAA)n Simple_repeat Simple_repeat 2 180 0 1727 218 73 19 chrY 2696468 2696936 -22016143 - MLT1D LTR MaLR -6 499 7 1911 154 11 0 chrY 2697127 2697412 -22015667 - AluSx SINE Alu -24 288 1 21 0 0 0 chrY 2698062 2698083 -22014996 + AT_rich Low_complexity Low_complexity 1 21 0 343 305 15 8 chrY 2698210 2698341 -22014738 + CT-rich Low_complexity Low_complexity 3 134 0 198 47 0 70 chrY 2699277 2699311 -22013768 + (GAAAA)n Simple_repeat Simple_repeat 2 34 -7 2210 112 0 3 chrY 2699311 2699623 -22013456 + AluY SINE Alu 1 311 0 198 47 0 70 chrY 2699623 2699631 -22013448 + (GAAAA)n Simple_repeat Simple_repeat 34 41 0 246 240 53 0 chrY 2699748 2699823 -22013256 - MER103 DNA DNA -58 108 30 4733 215 35 90 chrY 2699823 2700188 -22012891 - L1MDa LINE L1 -4905 1635 1251 572 195 0 0 chrY 2700188 2700316 -22012763 - L1MA6 LINE L1 -5 6295 6168 4733 215 35 90 chrY 2700316 2701543 -22011536 - L1MDa LINE L1 -5289 1251 131 22 70 0 0 chrY 2701819 2701862 -22011217 + AT_rich Low_complexity Low_complexity 1 43 0 331 286 185 0 chrY 2702778 2702897 -22010182 - MIR SINE MIR -65 197 57 252 406 0 0 chrY 2703035 2703131 -22009948 - L2 LINE L2 -16 3256 3161 22 35 0 0 chrY 2703561 2703590 -22009489 + AT_rich Low_complexity Low_complexity 1 29 0 4824 177 41 35 chrY 2704082 2705881 -22007198 - L1MA9 LINE L1 0 6312 4527 2378 66 30 3 chrY 2705881 2706184 -22006895 - AluY SINE Alu 0 311 1 2309 88 3 10 chrY 2706184 2706492 -22006587 - AluSq SINE Alu -7 306 1 4824 177 41 35 chrY 2706492 2706573 -22006506 - L1MA9 LINE L1 -1784 4528 4411 2359 176 7 25 chrY 2706573 2707010 -22006069 + Tigger2a DNA MER2_type 1 429 -5 4869 180 34 23 chrY 2707030 2707959 -22005120 - L1MA9 LINE L1 -1754 4392 3446 2191 129 0 0 chrY 2707959 2708269 -22004810 - AluSx SINE Alu -1 311 2 4869 180 34 23 chrY 2708269 2708488 -22004591 - L1MA9 LINE L1 -2700 3446 3231 215 404 22 29 chrY 2708751 2708887 -22004192 + L2 LINE L2 3119 3253 -19 1669 190 7 7 chrY 2708920 2709230 -22003849 - AluJb SINE Alu -2 310 1 19410 177 17 15 chrY 2710456 2711475 -22001604 - L1MA1 LINE L1 -5 7716 6701 2282 107 3 0 chrY 2711475 2711784 -22001295 - AluSp SINE Alu -3 310 1 19410 177 17 15 chrY 2711784 2714781 -21998298 - L1MA1 LINE L1 -1020 6701 3712 2452 75 3 0 chrY 2714781 2715087 -21997992 - AluY SINE Alu -4 307 1 19410 177 17 15 chrY 2715087 2718740 -21994339 - L1MA1 LINE L1 -4009 3712 14 2157 113 3 7 chrY 2719710 2720019 -21993060 - AluSx SINE Alu -4 308 1 3953 170 20 0 chrY 2720740 2721429 -21991650 - L1PA16 LINE L1 -2 6164 5462 318 364 52 13 chrY 2721800 2721954 -21991125 - MIR3 SINE MIR -14 194 35 24 0 0 0 chrY 2721964 2721988 -21991091 + AT_rich Low_complexity Low_complexity 1 24 0 13532 138 13 65 chrY 2722754 2722927 -21990152 - Tigger1 DNA MER2_type -1 2417 2237 11474 32 1 1 chrY 2722927 2725061 -21988018 + L1PA4 LINE L1 4022 6155 0 13532 138 13 65 chrY 2725061 2725079 -21988000 - Tigger1 DNA MER2_type -181 2237 2220 258 81 0 0 chrY 2725079 2725116 -21987963 + (TAAAA)n Simple_repeat Simple_repeat 2 38 0 13532 138 13 65 chrY 2725116 2727190 -21985889 - Tigger1 DNA MER2_type -198 2220 40 1237 114 10 0 chrY 2727190 2727391 -21985688 + L1MA2 LINE L1 6102 6304 0 13532 138 13 65 chrY 2727391 2727445 -21985634 - Tigger1 DNA MER2_type -2378 40 236 1655 164 0 41 chrY 2727445 2727738 -21985341 + AluSx SINE Alu 5 285 -27 13532 138 13 65 chrY 2727738 2727964 -21985115 - Tigger1 DNA MER2_type -2181 237 1 398 358 11 21 chrY 2728501 2728691 -21984388 - MARNA DNA Mariner -398 188 1 1783 183 30 3 chrY 2729023 2729323 -21983756 + L1PA13 LINE L1 2 309 -6478 * 2035 242 17 0 chrY 2729311 2729778 -21983301 + L1P LINE L1 2551 3025 -3121 25406 151 20 16 chrY 2729802 2735368 -21977711 + L1PA13 LINE L1 339 5990 -807 5876 109 12 2 chrY 2735367 2736232 -21976847 + L1PA13 LINE L1 5266 6138 -25 * 1148 202 37 0 chrY 2736232 2736475 -21976604 + MER58B DNA MER1_type 90 341 0 21 0 0 0 chrY 2738035 2738056 -21975023 + AT_rich Low_complexity Low_complexity 1 21 0 970 265 109 3 chrY 2738427 2738740 -21974339 + L2 LINE L2 2556 2901 -413 2131 116 0 0 chrY 2740009 2740294 -21972785 - AluSc SINE Alu -24 285 1 7789 161 15 6 chrY 2740386 2742891 -21970188 - L1MA2 LINE L1 0 7723 5194 1305 183 39 4 chrY 2742904 2743134 -21969945 - AluJb SINE Alu -73 239 2 9395 176 20 12 chrY 2743135 2746320 -21966759 - L1MA2 LINE L1 -2360 5205 1994 2060 149 30 25 chrY 2746331 2746693 -21966386 + THE1B LTR MaLR 1 364 0 2670 80 11 0 chrY 2746693 2747057 -21966022 + THE1B-int LTR MaLR 1 368 -1212 285 29 0 0 chrY 2747059 2747093 -21965986 + (TTTTA)n Simple_repeat Simple_repeat 1 34 0 6081 92 17 27 chrY 2747093 2748048 -21965031 - L1PA8 LINE L1 -24 6148 5199 4286 125 16 0 chrY 2748037 2748661 -21964418 + THE1B-int LTR MaLR 350 983 -597 * 283 75 0 0 chrY 2748653 2748693 -21964386 + THE1B-int LTR MaLR 1541 1580 0 * 2153 146 34 14 chrY 2748693 2749049 -21964030 + THE1B LTR MaLR 1 363 -1 424 232 0 0 chrY 2749077 2749159 -21963920 - L1MA2 LINE L1 -5656 1909 1828 8781 190 40 10 chrY 2749170 2750805 -21962274 - L1MA2 LINE L1 -5861 1704 21 1071 150 9 9 chrY 2751010 2751223 -21961856 - L1MA4A LINE L1 -1 6302 6090 2194 112 3 0 chrY 2751728 2752022 -21961057 + AluSg SINE Alu 1 295 -15 28 0 0 0 chrY 2752191 2752219 -21960860 + AT_rich Low_complexity Low_complexity 1 28 0 32 0 0 0 chrY 2752244 2752276 -21960803 + AT_rich Low_complexity Low_complexity 1 32 0 2249 91 3 13 chrY 2752671 2752979 -21960100 - AluSg1 SINE Alu -4 305 1 25 0 0 0 chrY 2754151 2754176 -21958903 + AT_rich Low_complexity Low_complexity 1 25 0 2245 104 3 0 chrY 2755699 2755997 -21957082 + AluSx SINE Alu 1 299 -13 761 272 30 5 chrY 2756104 2756306 -21956773 - MER63A DNA MER1_type -3 207 1 5477 74 12 19 chrY 2758761 2759533 -21953546 - MER4E LTR ERV1 0 766 1 25 51 0 0 chrY 2759687 2759726 -21953353 + AT_rich Low_complexity Low_complexity 1 39 0 1962 120 27 3 chrY 2759818 2760118 -21952961 - AluSq SINE Alu -6 307 1 658 233 14 20 chrY 2760506 2760652 -21952427 + MIR SINE MIR 4 148 -114 209 330 34 42 chrY 2760701 2760819 -21952260 + L2 LINE L2 3192 3308 -5 408 236 9 0 chrY 2761835 2761941 -21951138 + L1MB7 LINE L1 6066 6172 -12 2282 95 7 0 chrY 2763625 2763919 -21949160 - AluSg SINE Alu -11 299 4 331 301 91 50 chrY 2763929 2764128 -21948951 - MIR SINE MIR -22 240 34 2593 64 3 0 chrY 2764593 2764904 -21948175 + AluSp SINE Alu 2 313 0 5701 92 19 14 chrY 2765612 2766755 -21946324 - L1PA13 LINE L1 -3 6160 4980 26 88 0 0 chrY 2766760 2766828 -21946251 + AT_rich Low_complexity Low_complexity 1 68 0 816 214 17 12 chrY 2768289 2768462 -21944617 + L1PB4 LINE L1 5980 6153 -3 21 0 0 0 chrY 2768541 2768562 -21944517 + AT_rich Low_complexity Low_complexity 1 21 0 246 271 36 79 chrY 2769338 2769478 -21943601 - MIR SINE MIR -55 207 74 5953 184 25 7 chrY 2770374 2771832 -21941247 - L1PA15 LINE L1 -3 6813 5298 180 97 0 0 chrY 2771832 2771863 -21941216 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5953 184 25 7 chrY 2771863 2772580 -21940499 - L1PA15 LINE L1 -1518 5298 4595 6481 54 8 0 chrY 2772580 2773399 -21939680 + L1PA7 LINE L1 5329 6154 0 28 0 0 0 chrY 2773410 2773438 -21939641 + AT_rich Low_complexity Low_complexity 1 28 0 3224 281 22 15 chrY 2773438 2774354 -21938725 - L1PA15 LINE L1 -4818 1969 1048 866 234 4 51 chrY 2774434 2774558 -21938521 - L1ME2 LINE L1 -16 6148 6041 286 23 47 0 chrY 2774558 2774601 -21938478 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 866 234 4 51 chrY 2774601 2774732 -21938347 - L1ME2 LINE L1 -123 6041 5905 13392 172 40 25 chrY 2775212 2776887 -21936192 - L1MA2 LINE L1 -450 7273 5624 1900 159 3 0 chrY 2776887 2777177 -21935902 + AluSx SINE Alu 2 292 -20 13392 172 40 25 chrY 2777177 2778619 -21934460 - L1MA2 LINE L1 -2099 5624 4205 2123 127 0 0 chrY 2778619 2778903 -21934176 - AluSx SINE Alu -28 284 1 13392 172 40 25 chrY 2778903 2779741 -21933338 - L1MA2 LINE L1 -3518 4205 3381 1927 157 0 14 chrY 2779741 2780034 -21933045 - AluSx SINE Alu -23 289 1 13392 172 40 25 chrY 2780034 2780850 -21932229 - L1MA2 LINE L1 -4342 3381 2579 2146 119 0 17 chrY 2780850 2781152 -21931927 - AluSg SINE Alu -12 298 2 13392 172 40 25 chrY 2781152 2783438 -21929641 - L1MA2 LINE L1 -5144 2579 11 344 378 10 31 chrY 2785305 2785498 -21927581 - MER5A DNA MER1_type 0 189 1 251 248 103 43 chrY 2785820 2785937 -21927142 - MIR SINE MIR -66 196 73 443 313 27 0 chrY 2787114 2787226 -21925853 - L2 LINE L2 -2 3270 3156 182 365 16 0 chrY 2787297 2787360 -21925719 + L2 LINE L2 3205 3268 -4 188 466 0 8 chrY 2787377 2787510 -21925569 + MIR SINE MIR 16 147 -61 525 32 0 0 chrY 2787664 2787727 -21925352 + (GGAA)n Simple_repeat Simple_repeat 3 65 0 644 158 88 0 chrY 2789114 2789228 -21923851 - MLT1D LTR MaLR -22 483 360 824 254 29 10 chrY 2789262 2789467 -21923612 - MER82 DNA MER2_type -1 652 444 308 342 50 20 chrY 2789498 2789697 -21923382 + MIR SINE MIR 1 205 -57 393 250 0 21 chrY 2789717 2789813 -21923266 - MER82 DNA MER2_type -559 94 1 1484 230 83 35 chrY 2789924 2790406 -21922673 + MLT1D LTR MaLR 1 505 0 2736 173 38 6 chrY 2790643 2791168 -21921911 - MER34 LTR ERV1 0 542 1 281 165 51 51 chrY 2791193 2791272 -21921807 + MER69 DNA AcHobo 67 145 -1081 278 217 0 0 chrY 2791296 2791356 -21921723 + MER69 DNA AcHobo 2467 2526 0 318 132 0 0 chrY 2791761 2791814 -21921265 + (CA)n Simple_repeat Simple_repeat 2 54 0 626 306 5 24 chrY 2791997 2792203 -21920876 - MIR SINE MIR -48 214 13 2144 86 7 11 chrY 2793854 2794133 -21918946 + AluSg SINE Alu 1 278 -32 2118 123 3 0 chrY 2794272 2794573 -21918506 + AluSp SINE Alu 1 302 -11 670 253 154 6 chrY 2794991 2795297 -21917782 - MER57A LTR ERV1 -4 398 60 238 338 12 0 chrY 2795310 2795390 -21917689 - MER93a LTR ERV1 -321 81 1 180 0 0 0 chrY 2795495 2795515 -21917564 + (A)n Simple_repeat Simple_repeat 1 20 0 1178 215 56 34 chrY 2795841 2796164 -21916915 + MER33 DNA MER1_type 1 316 -8 193 75 50 0 chrY 2796276 2796316 -21916763 + A-rich Low_complexity Low_complexity 3 44 0 3668 95 21 83 chrY 2796780 2797162 -21915917 - LTR66 LTR ERVL 0 610 283 2103 113 13 3 chrY 2797162 2797464 -21915615 - AluSp SINE Alu -8 305 1 3668 95 21 83 chrY 2797464 2797731 -21915348 - LTR66 LTR ERVL -327 283 1 229 129 69 0 chrY 2797976 2798092 -21914987 + (TA)n Simple_repeat Simple_repeat 1 124 0 189 0 0 0 chrY 2799026 2799047 -21914032 + (CAAAA)n Simple_repeat Simple_repeat 1 21 0 2420 99 0 0 chrY 2799617 2799921 -21913158 - AluSq SINE Alu -8 305 2 5542 70 16 19 chrY 2801469 2802238 -21910841 - MER4E LTR ERV1 0 766 1 1375 163 11 70 chrY 2802399 2802766 -21910313 - MER4A LTR ERV1 0 664 261 511 132 22 11 chrY 2802767 2802858 -21910221 - MER4A LTR ERV1 -572 92 1 2208 138 66 17 chrY 2802860 2803267 -21909812 + MSTA LTR MaLR 2 428 0 297 0 0 0 chrY 2804187 2804220 -21908859 + (TG)n Simple_repeat Simple_repeat 2 34 0 23 0 0 0 chrY 2804227 2804250 -21908829 + AT_rich Low_complexity Low_complexity 1 23 0 279 114 0 0 chrY 2806463 2806507 -21906572 + (TG)n Simple_repeat Simple_repeat 2 45 0 1969 119 53 44 chrY 2806541 2806902 -21906177 - THE1B LTR MaLR 0 364 1 1536 185 34 7 chrY 2807161 2807453 -21905626 + AluJo SINE Alu 1 300 -12 213 164 18 55 chrY 2807723 2807756 -21905323 + (TATATG)n Simple_repeat Simple_repeat 6 38 -20 1296 186 83 31 chrY 2807756 2808083 -21904996 + MER2 DNA MER2_type 1 344 0 213 164 18 55 chrY 2808083 2808104 -21904975 + (TATATG)n Simple_repeat Simple_repeat 38 58 0 22 0 0 0 chrY 2808428 2808450 -21904629 + AT_rich Low_complexity Low_complexity 1 22 0 2410 94 3 0 chrY 2808661 2808970 -21904109 - AluSp SINE Alu -3 310 1 24 0 0 0 chrY 2810118 2810142 -21902937 + AT_rich Low_complexity Low_complexity 1 24 0 3294 69 5 7 chrY 2810260 2810709 -21902370 - LTR7 LTR ERV1 -2 448 1 2267 84 65 14 chrY 2810709 2811080 -21901999 - HERVH LTR ERV1 0 7713 7324 1326 119 18 9 chrY 2811080 2811298 -21901781 - HERVH LTR ERV1 -1894 5819 5600 3933 146 11 3 chrY 2811299 2811956 -21901123 - HERVH LTR ERV1 -2564 5149 4488 3146 113 4 6 chrY 2811958 2812461 -21900618 - HERVH LTR ERV1 -3720 3993 3492 816 155 20 0 chrY 2812451 2812599 -21900480 - HERVH LTR ERV1 -4423 3290 3140 * 14417 110 26 17 chrY 2812593 2815449 -21897630 - HERVH LTR ERV1 -4726 2987 1 3465 56 2 7 chrY 2815451 2815901 -21897178 - LTR7 LTR ERV1 -2 448 1 322 362 62 18 chrY 2816136 2816412 -21896667 - L1M4 LINE L1 -1491 4655 4368 3263 124 53 51 chrY 2816763 2817368 -21895711 + MER4B LTR ERV1 5 610 0 1687 53 5 5 chrY 2817448 2817655 -21895424 + AluSp SINE Alu 1 207 -106 1791 68 0 0 chrY 2817656 2817891 -21895188 + MER4E LTR ERV1 532 766 0 3011 142 29 107 chrY 2818899 2819094 -21893985 - LTR8 LTR ERV1 0 691 482 1954 107 50 11 chrY 2819094 2819375 -21893704 + AluSx SINE Alu 1 292 -20 3011 142 29 107 chrY 2819375 2819928 -21893151 - LTR8 LTR ERV1 -209 482 1 523 128 248 8 chrY 2820379 2820496 -21892583 - MER4C LTR ERV1 -21 444 300 1059 177 125 26 chrY 2820558 2820869 -21892210 - MER4A LTR ERV1 -322 342 1 216 0 0 0 chrY 2821212 2821236 -21891843 + (A)n Simple_repeat Simple_repeat 1 24 0 23 33 0 0 chrY 2821471 2821501 -21891578 + AT_rich Low_complexity Low_complexity 1 30 0 393 323 63 32 chrY 2821570 2821729 -21891350 - MIR3 SINE MIR -9 199 32 1951 67 86 4 chrY 2821729 2822022 -21891057 - AluY SINE Alu 0 311 1 393 323 63 32 chrY 2822022 2822051 -21891028 - MIR3 SINE MIR -176 32 5 204 40 0 0 chrY 2822074 2822099 -21890980 + (A)n Simple_repeat Simple_repeat 1 25 0 1825 92 92 4 chrY 2824801 2825102 -21887977 - AluSx SINE Alu 0 324 1 1853 230 69 41 chrY 2825419 2825958 -21887121 - MLT2B3 LTR ERVL 0 554 1 180 77 0 0 chrY 2826562 2826588 -21886491 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 1742 163 3 7 chrY 2826592 2826881 -21886198 - AluJb SINE Alu -24 288 1 26 0 0 0 chrY 2826884 2826910 -21886169 + AT_rich Low_complexity Low_complexity 1 26 0 310 396 0 0 chrY 2826966 2827105 -21885974 + MIR3 SINE MIR 64 202 -6 2011 116 7 3 chrY 2827153 2827446 -21885633 + AluSq SINE Alu 6 299 -14 2551 57 0 0 chrY 2828729 2829026 -21884053 - AluY SINE Alu -14 297 1 202 147 53 53 chrY 2829046 2829103 -21883976 + (TTAA)n Simple_repeat Simple_repeat 2 61 -15 1859 142 10 7 chrY 2829103 2829392 -21883687 - AluJb SINE Alu -22 290 1 202 147 53 53 chrY 2829392 2829409 -21883670 + (TTAA)n Simple_repeat Simple_repeat 60 76 0 25 75 0 0 chrY 2829640 2829693 -21883386 + AT_rich Low_complexity Low_complexity 1 53 0 2210 109 0 0 chrY 2830137 2830439 -21882640 - AluSg1 SINE Alu -7 302 1 2372 92 3 0 chrY 2831127 2831432 -21881647 - AluSx SINE Alu -2 310 5 1534 80 11 0 chrY 2831698 2831909 -21881170 - AluSc SINE Alu 0 305 93 2086 110 11 0 chrY 2831957 2832269 -21880810 - AluSq SINE Alu 0 315 1 2033 127 0 0 chrY 2832650 2832934 -21880145 + AluSx SINE Alu 9 292 -20 987 310 163 23 chrY 2833349 2834173 -21878906 + L2 LINE L2 2098 3066 -247 487 256 60 88 chrY 2834251 2834321 -21878758 - MER102b DNA MER1_type -1087 341 271 1970 144 7 0 chrY 2834321 2834613 -21878466 + AluSp SINE Alu 1 294 -19 487 256 60 88 chrY 2834613 2834893 -21878186 - MER102b DNA MER1_type -1157 271 1 591 266 32 7 chrY 2834899 2835053 -21878026 + L2 LINE L2 3156 3313 0 1265 71 0 0 chrY 2835701 2835869 -21877210 - L1PA5 LINE L1 0 6154 5987 2214 112 0 0 chrY 2835897 2836213 -21876866 + AluSq SINE Alu 1 316 0 2243 114 7 0 chrY 2836384 2836692 -21876387 + AluSp SINE Alu 2 311 -2 34 55 0 0 chrY 2836692 2836747 -21876332 + AT_rich Low_complexity Low_complexity 1 55 0 381 22 0 0 chrY 2836769 2836815 -21876264 + (TG)n Simple_repeat Simple_repeat 2 47 0 22 0 0 0 chrY 2836861 2836883 -21876196 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chrY 2837266 2837296 -21875783 + AT_rich Low_complexity Low_complexity 1 30 0 2233 106 0 7 chrY 2837592 2837895 -21875184 - AluSg SINE Alu -9 301 1 2216 103 0 7 chrY 2838476 2838777 -21874302 - AluSx SINE Alu -13 299 1 25 31 0 0 chrY 2838815 2838847 -21874232 + AT_rich Low_complexity Low_complexity 1 32 0 22 70 0 0 chrY 2839057 2839100 -21873979 + AT_rich Low_complexity Low_complexity 1 43 0 2115 93 4 4 chrY 2839191 2839471 -21873608 + AluSg SINE Alu 1 280 -30 948 297 86 26 chrY 2839497 2839988 -21873091 - MER34 LTR ERV1 -18 524 5 243 146 0 0 chrY 2840040 2840081 -21872998 + (CA)n Simple_repeat Simple_repeat 2 42 0 2326 77 7 17 chrY 2840451 2840751 -21872328 + AluSp SINE Alu 3 299 -14 4633 70 55 23 chrY 2841507 2842068 -21871011 - PABL_A LTR ERV1 0 660 118 2366 81 0 26 chrY 2842068 2842378 -21870701 + AluSq SINE Alu 1 302 -11 2263 83 0 17 chrY 2842378 2842678 -21870401 + AluSc SINE Alu 1 295 -14 504 117 0 0 chrY 2842679 2842756 -21870323 + (TA)n Simple_repeat Simple_repeat 2 78 0 4633 70 55 23 chrY 2842756 2842831 -21870248 - PABL_A LTR ERV1 -541 119 1 30 45 0 0 chrY 2843081 2843125 -21869954 + AT_rich Low_complexity Low_complexity 1 44 0 2183 102 7 0 chrY 2843404 2843709 -21869370 - AluSp SINE Alu -6 307 1 3666 101 21 62 chrY 2843834 2844460 -21868619 - MER4A LTR ERV1 0 600 1 189 0 0 0 chrY 2844520 2844541 -21868538 + (A)n Simple_repeat Simple_repeat 1 21 0 3541 107 57 0 chrY 2844570 2845094 -21867985 - MER41A LTR ERV1 0 554 1 345 47 0 0 chrY 2845796 2845839 -21867240 + (TG)n Simple_repeat Simple_repeat 1 43 0 793 231 74 9 chrY 2846230 2846446 -21866633 - L2 LINE L2 -280 3033 2804 1048 254 17 7 chrY 2846465 2846760 -21866319 + MER58B DNA MER1_type 44 341 0 529 268 12 48 chrY 2846767 2846935 -21866144 - L2 LINE L2 -507 2807 2646 998 186 12 0 chrY 2847033 2847205 -21865874 - FAM SINE Alu 0 175 2 1448 153 10 45 chrY 2847577 2847891 -21865188 - L1MB8 LINE L1 -15 6163 5861 3296 89 9 2 chrY 2847896 2848358 -21864721 - L1PA10 LINE L1 -2 6166 5702 225 135 27 81 chrY 2848507 2848581 -21864498 + A-rich Low_complexity Low_complexity 1 70 0 2175 90 42 3 chrY 2849315 2849604 -21863475 - AluSg SINE Alu 0 310 11 203 294 18 18 chrY 2850177 2850286 -21862793 + (TA)n Simple_repeat Simple_repeat 1 109 0 21 0 0 0 chrY 2851682 2851703 -21861376 + AT_rich Low_complexity Low_complexity 1 21 0 1847 79 18 129 chrY 2852197 2852537 -21860542 - AluSp SINE Alu -1 302 1 2855 16 0 6 chrY 2852839 2853159 -21859920 - AluYb8 SINE Alu 0 318 1 419 186 10 0 chrY 2853215 2853317 -21859762 + (CA)n Simple_repeat Simple_repeat 2 104 0 1538 198 0 11 chrY 2853355 2853638 -21859441 + AluJb SINE Alu 1 280 -32 7392 94 5 17 chrY 2853640 2854678 -21858401 + THE1A-int LTR MaLR 556 1580 0 2463 91 3 0 chrY 2854678 2855008 -21858071 + THE1A LTR MaLR 1 331 -24 22 0 0 0 chrY 2855955 2855977 -21857102 + AT_rich Low_complexity Low_complexity 1 22 0 2105 128 0 0 chrY 2857089 2857387 -21855692 + AluSx SINE Alu 1 298 -14 941 111 6 18 chrY 2858159 2858282 -21854797 + (TTCC)n Simple_repeat Simple_repeat 1 290 0 941 111 6 18 chrY 2858282 2858453 -21854626 + (TTCC)n Simple_repeat Simple_repeat 3 171 0 798 177 0 17 chrY 2858470 2858651 -21854428 + CT-rich Low_complexity Low_complexity 3 180 0 2068 98 39 0 chrY 2858671 2858957 -21854122 - AluSx SINE Alu -15 297 1 23 33 0 0 chrY 2859056 2859086 -21853993 + AT_rich Low_complexity Low_complexity 1 30 0 198 143 0 0 chrY 2859184 2859219 -21853860 + (TA)n Simple_repeat Simple_repeat 2 36 0 297 0 0 0 chrY 2859219 2859252 -21853827 + (CA)n Simple_repeat Simple_repeat 2 34 0 189 74 0 0 chrY 2859857 2859884 -21853195 + (TC)n Simple_repeat Simple_repeat 2 28 0 180 0 0 0 chrY 2859885 2859905 -21853174 + (TG)n Simple_repeat Simple_repeat 1 20 0 369 109 0 0 chrY 2859905 2859960 -21853119 + (TA)n Simple_repeat Simple_repeat 1 55 0 2907 258 25 22 chrY 2860025 2860931 -21852148 - L1ME1 LINE L1 -1 6165 5257 253 212 0 15 chrY 2861012 2861078 -21852001 - L1ME1 LINE L1 -1465 4681 4617 1082 266 143 22 chrY 2861081 2861613 -21851466 - L1ME1 LINE L1 -1592 4554 3929 2371 71 0 0 chrY 2861613 2861936 -21851143 - AluY SINE Alu 0 311 1 1082 266 143 22 chrY 2861936 2862047 -21851032 - L1ME1 LINE L1 -2217 3929 3833 22 0 0 0 chrY 2862837 2862859 -21850220 + AT_rich Low_complexity Low_complexity 1 22 0 39 50 0 0 chrY 2863134 2863194 -21849885 + AT_rich Low_complexity Low_complexity 1 60 0 198 0 0 0 chrY 2863194 2863216 -21849863 + (TATG)n Simple_repeat Simple_repeat 3 24 0 2167 98 40 0 chrY 2863216 2863512 -21849567 - AluSx SINE Alu -4 308 1 297 0 0 0 chrY 2863762 2863795 -21849284 + (CA)n Simple_repeat Simple_repeat 2 34 0 3876 128 71 46 chrY 2864864 2865628 -21847451 + LTR1 LTR ERV1 1 783 -2 1104 245 93 117 chrY 2865835 2866052 -21847027 + L2 LINE L2 2374 2595 -718 2458 62 0 10 chrY 2866052 2866361 -21846718 - AluY SINE Alu -4 307 2 1104 245 93 117 chrY 2866361 2867105 -21845974 + L2 LINE L2 2595 3313 0 22 80 0 0 chrY 2868222 2868272 -21844807 + AT_rich Low_complexity Low_complexity 1 50 0 2070 128 0 7 chrY 2868393 2868698 -21844381 + AluSq SINE Alu 1 303 -10 1542 135 0 0 chrY 2868775 2868997 -21844082 + AluSg/x SINE Alu 87 308 -4 2144 109 0 0 chrY 2869106 2869390 -21843689 - AluSc SINE Alu -25 284 1 26 50 0 0 chrY 2869853 2869893 -21843186 + AT_rich Low_complexity Low_complexity 1 40 0 1642 156 158 18 chrY 2870091 2870527 -21842552 - LTR54B LTR ERV1 -1 497 1 219 114 0 0 chrY 2870536 2870571 -21842508 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2925 135 12 6 chrY 2870620 2871429 -21841650 - L1PB1 LINE L1 0 6867 5922 * 8645 132 51 9 chrY 2871422 2872502 -21840577 - L1PB1 LINE L1 -4152 2711 1678 2173 129 0 0 chrY 2872502 2872797 -21840282 - AluSx SINE Alu -15 297 3 8645 132 51 9 chrY 2872797 2874177 -21838902 - L1PB1 LINE L1 -5185 1678 2 2327 125 5 35 chrY 2875012 2875387 -21837692 + THE1B LTR MaLR 1 364 0 21 0 0 0 chrY 2876407 2876428 -21836651 + AT_rich Low_complexity Low_complexity 1 21 0 1483 216 14 7 chrY 2876923 2877219 -21835860 + AluJo SINE Alu 1 298 -14 2486 45 0 0 chrY 2877576 2877863 -21835216 + AluY SINE Alu 15 301 -10 1557 193 0 0 chrY 2878596 2878850 -21834229 - AluJb SINE Alu -58 254 1 1493 173 108 0 chrY 2878883 2879208 -21833871 + AluJb SINE Alu 5 359 0 529 266 76 11 chrY 2879315 2879499 -21833580 - MIR3 SINE MIR -5 203 8 268 235 0 0 chrY 2880326 2880377 -21832702 - L2 LINE L2 -9 3304 3254 309 270 21 159 chrY 2880443 2880632 -21832447 - L2 LINE L2 -55 3217 3055 1231 173 20 123 chrY 2881219 2881413 -21831666 - AluJo SINE Alu -5 307 161 2237 115 0 0 chrY 2881413 2881726 -21831353 - AluSq SINE Alu 0 313 1 1231 173 20 123 chrY 2881726 2881873 -21831206 - AluJo SINE Alu -151 161 1 223 184 0 0 chrY 2881958 2881998 -21831081 - MIR SINE MIR -63 145 111 293 259 47 12 chrY 2882043 2882128 -21830951 - MER5B DNA MER1_type -2 176 89 1675 256 130 19 chrY 2882132 2882234 -21830845 - L1 LINE L1 -1439 4707 4618 1901 149 17 3 chrY 2882234 2882530 -21830549 - AluSx SINE Alu -12 300 1 1675 256 130 19 chrY 2882530 2883117 -21829962 - L1 LINE L1 -1528 4618 3941 1160 133 23 0 chrY 2883156 2883329 -21829750 - FRAM SINE Alu -4 172 1 21 0 0 0 chrY 2884126 2884147 -21828932 + AT_rich Low_complexity Low_complexity 1 21 0 2399 76 3 0 chrY 2884969 2885273 -21827806 - AluSp SINE Alu -8 305 1 3056 98 77 8 chrY 2885436 2885914 -21827165 - MER9 LTR ERVK 0 511 1 195 162 0 0 chrY 2886168 2886205 -21826874 + A-rich Low_complexity Low_complexity 1 37 0 213 139 0 0 chrY 2886232 2886275 -21826804 + (TAAAA)n Simple_repeat Simple_repeat 2 44 0 396 191 0 135 chrY 2886595 2886721 -21826358 + MIR SINE MIR 124 232 -30 1990 112 3 0 chrY 2886905 2887199 -21825880 - L1PA8 LINE L1 0 6172 5878 2061 148 119 10 chrY 2887487 2887873 -21825206 + MSTA LTR MaLR 1 428 0 1084 95 114 0 chrY 2888122 2888280 -21824799 - AluJb SINE Alu -4 308 133 23 0 0 0 chrY 2888925 2888948 -21824131 + AT_rich Low_complexity Low_complexity 1 23 0 1842 163 0 25 chrY 2890640 2890960 -21822119 - AluJb SINE Alu 0 312 1 225 132 0 0 chrY 2891618 2891656 -21821423 + (A)n Simple_repeat Simple_repeat 1 38 0 2450 55 6 10 chrY 2893105 2893417 -21819662 + AluY SINE Alu 1 311 0 1658 168 59 22 chrY 2893514 2893871 -21819208 + L1MC3 LINE L1 7396 7765 -20 1934 136 0 7 chrY 2893894 2894215 -21818864 - AluSq SINE Alu 0 319 1 1885 231 49 49 chrY 2895083 2895504 -21817575 - L1M4 LINE L1 -1815 5142 4722 291 28 0 0 chrY 2895504 2895540 -21817539 + (TG)n Simple_repeat Simple_repeat 2 37 0 1885 231 49 49 chrY 2895540 2895559 -21817520 - L1M4 LINE L1 -2235 4722 4704 2168 101 3 10 chrY 2895559 2895857 -21817222 + AluSq SINE Alu 1 296 -17 1885 231 49 49 chrY 2895857 2896008 -21817071 - L1M4 LINE L1 -2252 4705 4550 * 5138 130 5 0 chrY 2896000 2896779 -21816300 - L1PA15 LINE L1 -2 6814 6032 9321 211 13 9 chrY 2896784 2898477 -21814602 - L1PA15 LINE L1 -869 5928 4217 4680 77 24 24 chrY 2898477 2899137 -21813942 - PABL_A LTR ERV1 0 660 1 9321 211 13 9 chrY 2899137 2900009 -21813070 - L1PA15 LINE L1 -2580 4217 3350 286 24 0 0 chrY 2900014 2900055 -21813024 + L1MA3 LINE L1 6265 6305 0 1104 176 0 134 chrY 2900063 2900235 -21812844 - L1PA15 LINE L1 -5026 1761 1660 2108 110 13 3 chrY 2900235 2900535 -21812544 - AluSg SINE Alu -6 304 2 1104 176 0 134 chrY 2900535 2900721 -21812358 - L1PA15 LINE L1 -5127 1660 1451 * 2771 250 9 28 chrY 2900713 2901392 -21811687 - L1PA15 LINE L1 -5920 867 202 195 125 0 0 chrY 2901397 2901437 -21811642 + (T)n Simple_repeat Simple_repeat 1 40 0 957 217 22 18 chrY 2901437 2901663 -21811416 - L1M4 LINE L1 -2401 4556 4330 1652 311 50 19 chrY 2901664 2902279 -21810800 - L1M4 LINE L1 -6215 644 11 195 359 28 21 chrY 2902383 2902525 -21810554 - L2 LINE L2 -498 2816 2674 414 365 57 30 chrY 2902748 2903151 -21809928 - L2 LINE L2 -924 2390 1977 25 0 0 0 chrY 2903956 2903981 -21809098 + AT_rich Low_complexity Low_complexity 1 25 0 302 280 16 48 chrY 2904313 2904438 -21808641 - MIR3 SINE MIR -1 207 87 1190 201 43 114 chrY 2905009 2905403 -21807676 - MLT1B LTR MaLR -24 366 1 7442 226 55 31 chrY 2905709 2906401 -21806678 + L1MB3 LINE L1 2676 3350 -2833 2013 103 15 0 chrY 2906401 2906523 -21806556 + AluSg SINE Alu 3 122 -188 351 0 0 0 chrY 2906523 2906562 -21806517 + (CA)n Simple_repeat Simple_repeat 2 40 0 2013 103 15 0 chrY 2906562 2906710 -21806369 + AluSg SINE Alu 122 277 -33 7442 226 55 31 chrY 2906710 2909446 -21803633 + L1MB3 LINE L1 3350 6183 0 1809 114 78 0 chrY 2910173 2910444 -21802635 - AluSq SINE Alu -15 298 7 183 269 0 77 chrY 2912829 2912907 -21800172 - L3 LINE CR1 -1328 249 178 * 345 276 219 10 chrY 2912906 2913102 -21799977 - MIR SINE MIR -6 256 20 3484 149 51 39 chrY 2913277 2914372 -21798707 - Tigger3b DNA MER2_type 0 1232 1 1619 203 3 0 chrY 2915148 2915443 -21797636 - AluJb SINE Alu -16 296 1 243 285 89 49 chrY 2915691 2915814 -21797265 - L2 LINE L2 -9 3263 3136 21 57 0 0 chrY 2915814 2915849 -21797230 + AT_rich Low_complexity Low_complexity 1 35 0 510 331 73 8 chrY 2917301 2917546 -21795533 + MIR SINE MIR 2 262 0 204 182 0 0 chrY 2917548 2917592 -21795487 + (TAG)n Simple_repeat Simple_repeat 1 44 0 21 0 0 0 chrY 2918918 2918939 -21794140 + AT_rich Low_complexity Low_complexity 1 21 0 828 152 8 0 chrY 2919134 2919259 -21793820 - FLAM_C SINE Alu -17 126 1 360 271 45 45 chrY 2919259 2919392 -21793687 + MIR SINE MIR 116 248 -14 24 32 0 0 chrY 2919418 2919449 -21793630 + AT_rich Low_complexity Low_complexity 1 31 0 312 27 0 0 chrY 2919994 2920031 -21793048 + (TC)n Simple_repeat Simple_repeat 2 38 0 5154 141 25 20 chrY 2920254 2920783 -21792296 - MER49 LTR ERV1 -2 921 383 2574 39 0 10 chrY 2920783 2921089 -21791990 - AluY SINE Alu -8 303 1 5154 141 25 20 chrY 2921089 2921475 -21791604 - MER49 LTR ERV1 -540 383 1 235 304 69 0 chrY 2921941 2922043 -21791036 - MIR SINE MIR -52 210 102 21 0 0 0 chrY 2923143 2923164 -21789915 + AT_rich Low_complexity Low_complexity 1 21 0 832 20 0 0 chrY 2923164 2923262 -21789817 - L1PA3 LINE L1 -3 6152 6055 2668 142 50 0 chrY 2924274 2924712 -21788367 - L1PA15 LINE L1 -13 6152 5693 640 166 106 46 chrY 2925609 2925760 -21787319 - MLT1G LTR MaLR -13 554 395 761 199 79 168 chrY 2925806 2926134 -21786945 - MLT1G LTR MaLR -295 300 3 198 0 0 0 chrY 2926211 2926233 -21786846 + (TA)n Simple_repeat Simple_repeat 1 22 0 * 384 22 0 0 chrY 2926232 2926277 -21786802 + (GA)n Simple_repeat Simple_repeat 2 46 0 758 329 19 25 chrY 2927593 2927912 -21785167 + L1ME2 LINE L1 35 351 -6045 * 3381 257 36 14 chrY 2927909 2928999 -21784080 + L1ME2 LINE L1 3056 4169 -2046 4814 117 8 1 chrY 2928999 2929741 -21783338 + L1MA3 LINE L1 5559 6305 0 2702 246 52 31 chrY 2929757 2930709 -21782370 + L1ME2 LINE L1 5260 6232 -1 670 191 6 6 chrY 2930866 2931023 -21782056 + CT-rich Low_complexity Low_complexity 3 159 0 217 240 0 40 chrY 2931998 2932048 -21781031 + (CGTG)n Simple_repeat Simple_repeat 4 51 0 339 25 0 0 chrY 2932341 2932381 -21780698 + (CAG)n Simple_repeat Simple_repeat 1 40 0 523 282 23 0 chrY 2932384 2932515 -21780564 + MER5A DNA MER1_type 50 183 -6 389 353 5 33 chrY 2932711 2932895 -21780184 + MIR SINE MIR 41 219 -43 4173 161 23 1 chrY 2933591 2934317 -21778762 + Tigger2 DNA MER2_type 3 744 -1974 1605 134 16 0 chrY 2934384 2934637 -21778442 + Tigger2 DNA MER2_type 2462 2718 0 23 0 0 0 chrY 2936144 2936167 -21776912 + AT_rich Low_complexity Low_complexity 1 23 0 300 281 149 16 chrY 2937052 2937173 -21775906 - L2 LINE L2 -2 3270 3134 2053 220 0 0 chrY 2938517 2938986 -21774093 + L1 LINE L1 4652 5120 -1026 2720 128 31 0 chrY 2938987 2939402 -21773677 - MSTA LTR MaLR 0 428 1 7912 192 46 3 chrY 2939402 2940981 -21772098 - MSTA-int LTR MaLR 0 1651 6 2614 142 31 0 chrY 2940994 2941409 -21771670 - MSTA LTR MaLR 0 428 1 5117 156 14 19 chrY 2941413 2942464 -21770615 + L1PA16 LINE L1 5120 6165 -1 23 33 0 0 chrY 2943869 2943899 -21769180 + AT_rich Low_complexity Low_complexity 1 30 0 185 370 41 0 chrY 2943974 2944047 -21769032 - MIR SINE MIR -114 94 19 28 0 0 0 chrY 2946717 2946745 -21766334 + AT_rich Low_complexity Low_complexity 1 28 0 241 260 13 26 chrY 2947924 2948001 -21765078 - MIR SINE MIR -183 79 4 2027 122 3 3 chrY 2948094 2948410 -21764669 - AluSq SINE Alu 0 316 1 729 252 35 53 chrY 2948978 2949199 -21763880 + L2 LINE L2 2633 2849 -465 2082 146 5 45 chrY 2949199 2949577 -21763502 + MER47A DNA MER2_type 4 366 0 729 252 35 53 chrY 2949577 2949637 -21763442 + L2 LINE L2 2849 2909 -405 2909 164 45 7 chrY 2949645 2950361 -21762718 - L1PBa LINE L1 -4921 1942 1 407 335 73 28 chrY 2951762 2951941 -21761138 - MIR3 SINE MIR -7 201 15 343 250 56 19 chrY 2952198 2952306 -21760773 - MARNA DNA Mariner -355 231 120 1964 178 19 3 chrY 2954398 2954757 -21758322 + MLT1A1 LTR MaLR 1 365 0 313 277 119 64 chrY 2955058 2955260 -21757819 - L2 LINE L2 -903 2411 2199 206 224 20 0 chrY 2955295 2955344 -21757735 - L2 LINE L2 0 3313 3264 211 233 33 17 chrY 2957695 2957755 -21755324 - L2 LINE L2 -3 3310 3250 187 316 74 51 chrY 2958207 2958422 -21754657 + L2 LINE L2 1587 1806 -1508 5810 220 34 27 chrY 2958640 2961153 -21751926 - L1MB3 LINE L1 -9 6568 4027 6115 126 27 35 chrY 2961153 2961747 -21751332 - Tigger3b DNA MER2_type -1798 1230 646 759 162 75 64 chrY 2961747 2961920 -21751159 + FAM SINE Alu 1 175 0 6115 126 27 35 chrY 2961920 2962391 -21750688 - Tigger3b DNA MER2_type -2382 646 173 738 168 0 0 chrY 2962426 2962545 -21750534 - FLAM_C SINE Alu -24 119 1 518 158 37 0 chrY 2962545 2962627 -21750452 - Tigger3b DNA MER2_type -1050 181 97 19838 146 12 89 chrY 2962630 2966971 -21746108 - L1P LINE L1 -2140 4006 2 1950 248 43 63 chrY 2966965 2967463 -21745616 - L1MB3 LINE L1 -3053 3487 3010 * 2373 91 3 0 chrY 2967463 2967770 -21745309 - AluSg SINE Alu -2 308 1 1950 248 43 63 chrY 2967770 2968278 -21744801 - L1MB3 LINE L1 -3530 3010 2494 531 277 87 31 chrY 2968585 2968780 -21744299 - L2 LINE L2 -5 3308 3103 25 75 0 0 chrY 2968970 2969023 -21744056 + AT_rich Low_complexity Low_complexity 1 53 0 205 250 0 0 chrY 2969577 2969629 -21743450 + (CAG)n Simple_repeat Simple_repeat 1 52 0 2844 177 23 8 chrY 2970060 2970591 -21742488 - MER34 LTR ERV1 -3 539 1 24 0 0 0 chrY 2971087 2971111 -21741968 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chrY 2972076 2972097 -21740982 + AT_rich Low_complexity Low_complexity 1 21 0 636 50 0 0 chrY 2972146 2972226 -21740853 + (TA)n Simple_repeat Simple_repeat 2 81 0 2290 87 0 10 chrY 2972226 2972525 -21740554 - AluY SINE Alu -15 296 1 2318 94 0 0 chrY 2972661 2972970 -21740109 - AluSg1 SINE Alu 0 309 1 180 0 0 0 chrY 2973788 2973808 -21739271 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 27 0 0 0 chrY 2974921 2974948 -21738131 + AT_rich Low_complexity Low_complexity 1 27 0 2112 165 8 14 chrY 2975586 2975943 -21737136 - MLT1A1 LTR MaLR 0 365 11 5287 187 164 47 chrY 2976038 2977539 -21735540 + MER52A LTR ERV1 1 1755 0 206 136 23 0 chrY 2977954 2977998 -21735081 + (TG)n Simple_repeat Simple_repeat 1 45 0 442 283 128 21 chrY 2979069 2979256 -21733823 + L3 LINE CR1 1133 1339 -238 327 25 0 0 chrY 2979999 2980039 -21733040 + (CA)n Simple_repeat Simple_repeat 1 40 0 2341 103 0 0 chrY 2980240 2980550 -21732529 + AluSg SINE Alu 1 310 0 1122 215 4 21 chrY 2981803 2982045 -21731034 + MER58B DNA MER1_type 103 340 -1 7102 54 9 0 chrY 2982122 2983096 -21729983 - L1PA7 LINE L1 0 6154 5176 5131 82 10 1 chrY 2983189 2983874 -21729205 - LTR8 LTR ERV1 0 691 1 1589 164 52 4 chrY 2984348 2984650 -21728429 + AluJb SINE Alu 1 315 0 769 294 44 63 chrY 2985225 2985654 -21727425 - MLT1G LTR MaLR 0 590 170 21 36 0 0 chrY 2985860 2985888 -21727191 + AT_rich Low_complexity Low_complexity 1 28 0 29 70 0 0 chrY 2987053 2987110 -21725969 + AT_rich Low_complexity Low_complexity 1 57 0 273 29 0 0 chrY 2989159 2989193 -21723886 + (TG)n Simple_repeat Simple_repeat 2 35 0 21 0 0 0 chrY 2989829 2989850 -21723229 + AT_rich Low_complexity Low_complexity 1 21 0 22 80 0 0 chrY 2991052 2991102 -21721977 + AT_rich Low_complexity Low_complexity 1 50 0 26 50 0 0 chrY 2992356 2992396 -21720683 + AT_rich Low_complexity Low_complexity 1 40 0 22 35 0 0 chrY 2993563 2993592 -21719487 + AT_rich Low_complexity Low_complexity 1 29 0 391 256 58 29 chrY 2994237 2994382 -21718697 + MIR3 SINE MIR 55 188 -27 307 278 0 0 chrY 2994428 2994500 -21718579 - MIR3 SINE MIR -17 191 120 2122 109 10 13 chrY 2995342 2995646 -21717433 + AluSx SINE Alu 1 303 -9 472 60 24 119 chrY 2996252 2996336 -21716743 - AluSg/x SINE Alu -20 290 215 587 295 36 6 chrY 2997458 2997624 -21715455 + MIR SINE MIR 34 204 -58 2373 67 0 3 chrY 2997669 2997967 -21715112 + AluY SINE Alu 1 297 -14 355 226 32 32 chrY 2998048 2998141 -21714938 - MER5A DNA MER1_type -88 101 9 2279 60 0 11 chrY 2998494 2998806 -21714273 - AluY SINE Alu 0 309 1 3474 184 26 4 chrY 3000898 3001601 -21711478 + L1P LINE L1 4492 5209 -937 291 28 0 0 chrY 3002093 3002129 -21710950 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 330 316 33 13 chrY 3003841 3003993 -21709086 + MIR SINE MIR 84 238 -24 2554 47 0 0 chrY 3004582 3004881 -21708198 + AluY SINE Alu 1 299 -12 461 267 87 65 chrY 3004928 3005266 -21707813 - L1MC4a LINE L1 -171 5950 5603 1990 118 13 25 chrY 3005405 3005719 -21707360 + AluSq SINE Alu 1 310 -3 353 303 106 24 chrY 3005855 3006152 -21706927 - L1ME3A LINE L1 -245 5925 5605 348 279 118 38 chrY 3006164 3006487 -21706592 - L1ME3A LINE L1 -748 5398 5189 350 333 12 0 chrY 3006504 3006622 -21706457 - L1MC4a LINE L1 -532 5589 5483 2232 103 3 0 chrY 3006638 3006939 -21706140 - AluSg SINE Alu -3 307 6 2328 86 0 13 chrY 3007331 3007646 -21705433 - AluY SINE Alu 0 311 1 24 0 0 0 chrY 3009455 3009479 -21703600 + AT_rich Low_complexity Low_complexity 1 24 0 3299 70 13 15 chrY 3010038 3010496 -21702583 - L1PA8 LINE L1 -13 6159 5703 480 214 0 22 chrY 3010646 3010828 -21702251 + GA-rich Low_complexity Low_complexity 3 180 0 225 0 0 0 chrY 3011418 3011443 -21701636 + (TG)n Simple_repeat Simple_repeat 2 26 0 982 75 14 0 chrY 3011692 3011839 -21701240 - L1PBa LINE L1 -6692 171 23 432 159 11 119 chrY 3011854 3012030 -21701049 - L1MCa LINE L1 -5226 1200 1044 3872 184 17 17 chrY 3012220 3012942 -21700137 - MER72 LTR ERV1 0 722 1 350 320 40 0 chrY 3013073 3013198 -21699881 - MIR SINE MIR -72 190 61 22 106 0 0 chrY 3014500 3014585 -21698494 + AT_rich Low_complexity Low_complexity 1 85 0 186 143 0 0 chrY 3014688 3014723 -21698356 + (TG)n Simple_repeat Simple_repeat 2 36 0 2116 105 29 9 chrY 3014761 3015104 -21697975 + L1MA1 LINE L1 5953 6302 0 749 215 6 0 chrY 3015211 3015388 -21697691 + L1MA4 LINE L1 6121 6298 -2 198 171 0 0 chrY 3016428 3016469 -21696610 + T-rich Low_complexity Low_complexity 1 41 0 225 222 28 0 chrY 3017156 3017228 -21695851 - L1MDa LINE L1 -2930 3610 3537 839 210 6 12 chrY 3017228 3017390 -21695689 - FRAM SINE Alu -19 157 1 473 236 149 8 chrY 3017393 3017634 -21695445 - L1MDa LINE L1 -3007 3533 3259 * 803 215 37 12 chrY 3017627 3017873 -21695206 - L1MDa LINE L1 -3623 2917 2666 225 108 0 0 chrY 3017885 3017922 -21695157 + (T)n Simple_repeat Simple_repeat 1 37 0 704 213 8 0 chrY 3017925 3018052 -21695027 - FLAM_A SINE Alu -5 128 1 1502 245 80 95 chrY 3018151 3018305 -21694774 - L1MDa LINE L1 -3936 2604 2449 2387 73 3 0 chrY 3018305 3018606 -21694473 - AluY SINE Alu -9 302 1 1502 245 80 95 chrY 3018606 3019703 -21693376 - L1MDa LINE L1 -4091 2449 1372 705 120 128 0 chrY 3019747 3019872 -21693207 - L1PA15 LINE L1 -2 6163 6023 3343 166 92 6 chrY 3019872 3020524 -21692555 - L1PA8A LINE L1 -170 5961 5254 233 213 40 0 chrY 3020531 3020606 -21692473 - L1MDa LINE L1 -5185 1355 1278 192 77 0 0 chrY 3020690 3020716 -21692363 + (T)n Simple_repeat Simple_repeat 1 26 0 5858 153 18 14 chrY 3020719 3021372 -21691707 - L1PB1 LINE L1 -3 6148 5499 199 70 23 23 chrY 3021372 3021415 -21691664 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2271 70 0 7 chrY 3021415 3021701 -21691378 - AluY SINE Alu -27 284 1 5858 153 18 14 chrY 3021701 3022708 -21690371 - L1PB1 LINE L1 -651 5500 4472 255 281 23 31 chrY 3023267 3023395 -21689684 - L1MDa LINE L1 -5882 648 522 559 302 132 5 chrY 3023442 3023654 -21689425 - LTR50 LTR ERVL -271 524 286 2332 290 43 44 chrY 3023695 3024633 -21688446 - L2 LINE L2 -569 2745 1809 257 400 17 0 chrY 3025353 3025468 -21687611 - MIR3 SINE MIR -31 177 61 293 274 0 14 chrY 3025558 3025631 -21687448 + CT-rich Low_complexity Low_complexity 2 73 0 305 377 7 7 chrY 3026010 3026148 -21686931 + MIR SINE MIR 40 177 -85 657 0 0 0 chrY 3027163 3027236 -21685843 + (TTTC)n Simple_repeat Simple_repeat 4 76 0 21 36 0 0 chrY 3030951 3030979 -21682100 + AT_rich Low_complexity Low_complexity 1 28 0 28 48 0 0 chrY 3031472 3031514 -21681565 + AT_rich Low_complexity Low_complexity 1 42 0 214 213 16 16 chrY 3032313 3032374 -21680705 + MIR SINE MIR 165 225 -37 378 74 0 0 chrY 3032721 3032775 -21680304 + (TCTA)n Simple_repeat Simple_repeat 1 54 0 655 212 0 15 chrY 3033152 3033284 -21679795 - FRAM SINE Alu -15 161 32 880 118 0 8 chrY 3033322 3033449 -21679630 - THE1B LTR MaLR 0 364 239 3367 174 77 7 chrY 3033449 3034602 -21678477 + L1PA12 LINE L1 2393 3631 -3953 5714 123 14 3 chrY 3034602 3035591 -21677488 + L1PA14 LINE L1 5161 6161 0 1111 86 0 25 chrY 3035593 3035755 -21677324 + L1MA2 LINE L1 6143 6300 -4 1060 228 58 85 chrY 3037013 3037546 -21675533 + MER39 LTR ERV1 1 682 -25 265 261 15 0 chrY 3038313 3038378 -21674701 + CT-rich Low_complexity Low_complexity 2 67 0 7981 189 13 66 chrY 3038776 3039013 -21674066 - L1PA16 LINE L1 -4 6162 5914 2132 117 51 17 chrY 3039013 3039365 -21673714 + THE1B LTR MaLR 1 364 0 11001 107 13 5 chrY 3039365 3040933 -21672146 + THE1B-int LTR MaLR 1 1580 0 1869 151 98 21 chrY 3040933 3041271 -21671808 + THE1B LTR MaLR 1 364 0 7981 189 13 66 chrY 3041271 3044042 -21669037 - L1PA16 LINE L1 -249 5917 3319 234 328 132 35 chrY 3044183 3044494 -21668585 + L3b LINE CR1 1129 1469 -114 2203 130 14 27 chrY 3044961 3045330 -21667749 + THE1B LTR MaLR 1 364 0 10749 117 12 0 chrY 3045330 3046891 -21666188 + THE1B-int LTR MaLR 1 1580 0 2123 149 5 35 chrY 3046891 3047266 -21665813 + THE1B LTR MaLR 1 364 0 2854 16 0 0 chrY 3047955 3048272 -21664807 + AluYb8 SINE Alu 1 317 -1 282 263 50 10 chrY 3048483 3048582 -21664497 - MIR SINE MIR -117 145 43 439 275 215 25 chrY 3048663 3048863 -21664216 + MIR SINE MIR 2 239 -23 219 281 99 25 chrY 3050312 3050433 -21662646 - MER5B DNA MER1_type -48 130 1 189 0 0 0 chrY 3051398 3051419 -21661660 + (TG)n Simple_repeat Simple_repeat 2 22 0 * 284 0 28 0 chrY 3051418 3051454 -21661625 + (TA)n Simple_repeat Simple_repeat 1 37 0 2213 92 0 3 chrY 3051455 3051747 -21661332 - AluSc SINE Alu -17 292 2 26 0 0 0 chrY 3051750 3051776 -21661303 + AT_rich Low_complexity Low_complexity 1 26 0 27 0 0 0 chrY 3052597 3052624 -21660455 + AT_rich Low_complexity Low_complexity 1 27 0 367 189 26 7 chrY 3053119 3053272 -21659807 + (TA)n Simple_repeat Simple_repeat 1 156 0 227 316 41 20 chrY 3053289 3053387 -21659692 + L2 LINE L2 3170 3269 -3 806 181 13 13 chrY 3054373 3054528 -21658551 - FRAM SINE Alu -16 160 6 21 0 0 0 chrY 3055477 3055498 -21657581 + AT_rich Low_complexity Low_complexity 1 21 0 33 25 0 0 chrY 3055984 3056024 -21657055 + AT_rich Low_complexity Low_complexity 1 40 0 28 71 0 0 chrY 3056550 3056606 -21656473 + AT_rich Low_complexity Low_complexity 1 56 0 4848 161 9 9 chrY 3057181 3058073 -21655006 - L1MA3 LINE L1 0 7724 6833 2128 199 37 25 chrY 3058076 3058563 -21654516 + L1 LINE L1 3964 4456 -1690 4856 167 23 3 chrY 3059971 3060889 -21652190 + L1 LINE L1 4441 5376 -770 391 309 36 30 chrY 3062453 3062618 -21650461 + MIR3 SINE MIR 43 208 0 2556 126 3 0 chrY 3063197 3063569 -21649510 + THE1C LTR MaLR 3 375 0 636 204 84 14 chrY 3063975 3064117 -21648962 + FRAM SINE Alu 10 161 -15 23 33 0 0 chrY 3064963 3064993 -21648086 + AT_rich Low_complexity Low_complexity 1 30 0 14934 184 23 35 chrY 3068352 3070061 -21643018 - L1MA3 LINE L1 -996 6569 4841 5845 113 17 35 chrY 3070061 3072054 -21641025 - L1PA13 LINE L1 0 6814 4836 14934 184 23 35 chrY 3072054 3074602 -21638477 - L1MA3 LINE L1 -2724 4841 2399 2334 130 17 8 chrY 3074602 3074963 -21638116 + THE1B LTR MaLR 1 364 0 14934 184 23 35 chrY 3074963 3076415 -21636664 - L1MA3 LINE L1 -5166 2399 931 12273 214 28 10 chrY 3076414 3076535 -21636544 - L1PA13 LINE L1 -2793 4004 3887 * 1628 159 49 85 chrY 3076535 3076924 -21636155 + THE1C LTR MaLR 1 375 0 12273 214 28 10 chrY 3076924 3079926 -21633153 - L1PA13 LINE L1 -2910 3887 773 259 44 44 0 chrY 3079926 3079971 -21633108 + (CA)n Simple_repeat Simple_repeat 1 47 0 12273 214 28 10 chrY 3079971 3080759 -21632320 - L1PA13 LINE L1 -6024 773 1 189 313 30 0 chrY 3080768 3080835 -21632244 + MIR SINE MIR 98 166 -96 23 54 0 0 chrY 3082360 3082397 -21630682 + AT_rich Low_complexity Low_complexity 1 37 0 1245 117 3 9 chrY 3082535 3082733 -21630346 + L1P5 LINE L1 5595 5791 -360 250 201 24 0 chrY 3082738 3082835 -21630244 + L1MC4 LINE L1 1995 6983 -1339 236 152 121 0 chrY 3082834 3082900 -21630179 + L1MC4 LINE L1 6920 6993 -1329 * 1238 141 0 0 chrY 3082891 3083083 -21629996 - L1P5 LINE L1 -523 5628 5437 2523 80 0 0 chrY 3083088 3083415 -21629664 + L1PB1 LINE L1 5782 6108 -43 23 0 0 0 chrY 3084843 3084866 -21628213 + AT_rich Low_complexity Low_complexity 1 23 0 1624 123 0 0 chrY 3085608 3085836 -21627243 - AluSg/x SINE Alu -4 308 81 208 267 33 0 chrY 3086142 3086202 -21626877 - L2 LINE L2 -4 3268 3207 822 152 30 0 chrY 3086534 3086666 -21626413 - FRAM SINE Alu -39 137 2 532 273 0 0 chrY 3086867 3086988 -21626091 + L2 LINE L2 3189 3309 -4 25 0 0 0 chrY 3087131 3087156 -21625923 + AT_rich Low_complexity Low_complexity 1 25 0 303 169 0 0 chrY 3088322 3088393 -21624686 + (TA)n Simple_repeat Simple_repeat 2 72 0 215 211 35 0 chrY 3088495 3088552 -21624527 + (TAA)n Simple_repeat Simple_repeat 3 61 0 1125 56 19 6 chrY 3089282 3089444 -21623635 + (GAAA)n Simple_repeat Simple_repeat 3 166 0 183 80 0 0 chrY 3089446 3089471 -21623608 + (CAAG)n Simple_repeat Simple_repeat 2 26 0 2071 211 15 19 chrY 3090079 3090432 -21622647 - L1MA9 LINE L1 -38 6274 5922 260 312 38 19 chrY 3090432 3090589 -21622490 - L1ME3A LINE L1 -244 5926 5767 31 0 0 0 chrY 3091613 3091644 -21621435 + AT_rich Low_complexity Low_complexity 1 31 0 42805 30 21 1 chrY 3091644 3097675 -21615404 - L1HS LINE L1 0 6155 1 686 127 59 0 chrY 3097970 3098088 -21614991 + L1MB1 LINE L1 6042 6166 -2 2191 107 3 3 chrY 3098343 3098641 -21614438 - AluSx SINE Alu -14 298 1 254 321 22 35 chrY 3099641 3099754 -21613325 - MIR SINE MIR -74 134 20 261 285 83 56 chrY 3100203 3100302 -21612777 - L1MA10 LINE L1 -4 6330 6224 2289 124 8 8 chrY 3100302 3100657 -21612422 - THE1A LTR MaLR 0 355 1 261 285 83 56 chrY 3100657 3100701 -21612378 - L1MA10 LINE L1 -110 6224 6183 824 206 95 51 chrY 3101670 3102055 -21611024 - MER31B LTR ERV1 0 466 3 376 257 143 0 chrY 3102119 3102224 -21610855 + L2 LINE L2 3145 3264 -8 31 26 0 0 chrY 3103588 3103626 -21609453 + AT_rich Low_complexity Low_complexity 1 38 0 1525 204 0 26 chrY 3104194 3104540 -21608539 + AluJb SINE Alu 3 340 0 13564 161 31 6 chrY 3105222 3107541 -21605538 + L1PA11 LINE L1 2820 5230 -944 279 0 0 0 chrY 3107541 3107572 -21605507 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 13564 161 31 6 chrY 3107572 3108537 -21604542 + L1PA11 LINE L1 5230 6169 -5 8320 190 30 68 chrY 3108775 3112105 -21600974 - L1PA15 LINE L1 -13 6152 2928 2030 117 7 10 chrY 3112477 3112768 -21600311 - AluSx SINE Alu -20 292 3 394 176 0 0 chrY 3112775 3112849 -21600230 + Tigger7 DNA MER2_type 2457 2530 -57 1885 126 61 0 chrY 3112865 3113159 -21599920 - AluSq SINE Alu -1 312 1 23 78 0 0 chrY 3113265 3113316 -21599763 + AT_rich Low_complexity Low_complexity 1 51 0 23 54 0 0 chrY 3113432 3113469 -21599610 + AT_rich Low_complexity Low_complexity 1 37 0 796 284 66 8 chrY 3117416 3117659 -21595420 + MIR SINE MIR 2 258 -4 2546 191 111 15 chrY 3118381 3118974 -21594105 - L1MB8 LINE L1 -1 6177 5528 2126 93 0 3 chrY 3119100 3119389 -21593690 + AluSx SINE Alu 11 298 -14 2549 55 0 0 chrY 3119408 3119718 -21593361 + AluY SINE Alu 1 310 -1 306 0 0 0 chrY 3120262 3120296 -21592783 + (TG)n Simple_repeat Simple_repeat 1 34 0 2241 74 0 3 chrY 3123397 3123704 -21589375 - AluY SINE Alu 0 334 29 365 275 150 31 chrY 3123712 3123872 -21589207 + MIR SINE MIR 53 231 -31 240 301 41 0 chrY 3123867 3123940 -21589139 - MIR SINE MIR -127 135 60 * 13304 137 22 62 chrY 3124819 3127337 -21585742 - Tigger1 DNA MER2_type -1 2417 1 248 305 75 70 chrY 3127348 3127561 -21585518 - MIR SINE MIR -15 247 34 22 0 0 0 chrY 3128005 3128027 -21585052 + AT_rich Low_complexity Low_complexity 1 22 0 186 344 75 25 chrY 3128364 3128524 -21584555 - L3b LINE CR1 -105 1478 1311 2270 109 0 0 chrY 3130029 3130332 -21582747 + AluSq SINE Alu 3 305 -8 6734 125 6 1 chrY 3131039 3132120 -21580959 + L1MA1 LINE L1 5216 6301 -1 2253 97 3 7 chrY 3132973 3133283 -21579796 - AluSp SINE Alu -4 309 1 2015 153 22 27 chrY 3137404 3137770 -21575309 - THE1B LTR MaLR 0 364 1 456 337 55 10 chrY 3138058 3138260 -21574819 - L2 LINE L2 -252 3061 2851 185 304 0 0 chrY 3138340 3138396 -21574683 - L2 LINE L2 -152 3161 3106 8618 76 2 28 chrY 3138396 3139636 -21573443 + L1P LINE L1 830 2036 -4110 4428 133 21 0 chrY 3139636 3140344 -21572735 + L1PA13 LINE L1 5422 6144 -19 2129 169 5 36 chrY 3140721 3141140 -21571939 - L1PA13 LINE L1 -4641 2146 1741 1072 166 0 24 chrY 3141139 3141350 -21571729 - L1M1 LINE L1 -632 7092 6887 * 1419 149 5 0 chrY 3141352 3141573 -21571506 - AluJb SINE Alu -6 306 85 1235 206 5 12 chrY 3141573 3142003 -21571076 - L1M1 LINE L1 -745 6820 6472 2244 181 17 15 chrY 3142004 3142475 -21570604 + L1 LINE L1 4430 4901 -1245 1076 181 5 9 chrY 3142474 3142689 -21570390 - L1M1 LINE L1 -1777 5788 5575 * 3978 188 35 6 chrY 3142701 3146334 -21566745 - L1M1 LINE L1 -3641 3924 11 1631 96 32 0 chrY 3146439 3146659 -21566420 + AluSg/x SINE Alu 71 297 -13 21 0 0 0 chrY 3146772 3146793 -21566286 + AT_rich Low_complexity Low_complexity 1 21 0 1092 113 12 0 chrY 3148315 3148475 -21564604 + AluSg/x SINE Alu 130 291 -19 1975 138 3 0 chrY 3150072 3150377 -21562702 - AluSx SINE Alu -6 306 1 333 363 32 8 chrY 3150817 3150941 -21562138 - MIR3 SINE MIR -30 178 52 237 222 0 0 chrY 3152178 3152241 -21560838 + CT-rich Low_complexity Low_complexity 2 64 0 904 182 0 0 chrY 3152412 3152582 -21560497 - AluSg/x SINE Alu 0 312 143 180 0 0 0 chrY 3152584 3152604 -21560475 + (TA)n Simple_repeat Simple_repeat 1 20 0 1646 177 13 3 chrY 3152870 3153170 -21559909 - AluJb SINE Alu -9 303 1 29 28 0 0 chrY 3153534 3153570 -21559509 + AT_rich Low_complexity Low_complexity 1 36 0 219 175 25 0 chrY 3153883 3153923 -21559156 + (CATATA)n Simple_repeat Simple_repeat 5 45 0 2447 159 20 0 chrY 3154513 3154954 -21558125 - L1MA5 LINE L1 -6 6294 5845 10473 175 30 7 chrY 3155140 3157689 -21555390 - L1MA2 LINE L1 0 7723 5076 180 0 0 0 chrY 3157689 3157709 -21555370 + (TG)n Simple_repeat Simple_repeat 2 21 0 10473 175 30 7 chrY 3157709 3158448 -21554631 - L1MA2 LINE L1 -2647 5076 4356 233 182 0 0 chrY 3158447 3158491 -21554588 - L1MA2 LINE L1 -7508 57 14 * 34 24 0 0 chrY 3159056 3159097 -21553982 + AT_rich Low_complexity Low_complexity 1 41 0 25 31 0 0 chrY 3159279 3159311 -21553768 + AT_rich Low_complexity Low_complexity 1 32 0 347 324 9 9 chrY 3159799 3159907 -21553172 - MIR3 SINE MIR -16 192 85 2177 159 22 3 chrY 3160506 3160871 -21552208 - THE1C LTR MaLR 0 375 4 8749 146 34 46 chrY 3160874 3162473 -21550606 - THE1C-int LTR MaLR 0 1580 1 2151 163 22 3 chrY 3162473 3162841 -21550238 - THE1C LTR MaLR 0 375 1 21 36 0 0 chrY 3163628 3163656 -21549423 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chrY 3163676 3163699 -21549380 + AT_rich Low_complexity Low_complexity 1 23 0 12509 201 84 5 chrY 3164030 3164116 -21548963 + L1MA2 LINE L1 11 89 -7476 180 0 0 0 chrY 3164116 3164136 -21548943 + (CA)n Simple_repeat Simple_repeat 2 21 0 12509 201 84 5 chrY 3164136 3166608 -21546471 + L1MA2 LINE L1 89 2772 -4793 2524 179 5 0 chrY 3166608 3167016 -21546063 - MSTA LTR MaLR 0 428 19 785 157 0 8 chrY 3167025 3167159 -21545920 - MSTA-int LTR MaLR 0 1651 1519 * 3275 164 2 2 chrY 3167156 3167712 -21545367 - MSTA-int LTR MaLR -1088 563 8 351 0 0 0 chrY 3167715 3167754 -21545325 + (T)n Simple_repeat Simple_repeat 1 39 0 2213 188 5 5 chrY 3167756 3168154 -21544925 - MSTA LTR MaLR -30 398 1 2484 132 20 0 chrY 3168154 3168563 -21544516 + L1MA2 LINE L1 2768 3184 -4381 6194 168 10 10 chrY 3168565 3170610 -21542469 + L1MA2 LINE L1 5677 7723 0 22 35 0 0 chrY 3170919 3170948 -21542131 + AT_rich Low_complexity Low_complexity 1 29 0 5094 133 6 4 chrY 3171614 3172424 -21540655 - L1P LINE L1 -1322 4824 4013 1895 88 4 0 chrY 3172424 3172682 -21540397 + L1PA11 LINE L1 5912 6173 -1 2305 66 3 7 chrY 3172797 3173098 -21539981 + AluY SINE Alu 1 300 -11 21 0 0 0 chrY 3173749 3173770 -21539309 + AT_rich Low_complexity Low_complexity 1 21 0 395 262 49 71 chrY 3173800 3173983 -21539096 + MIR SINE MIR 13 191 -71 384 167 78 0 chrY 3174245 3174335 -21538744 - L1ME4a LINE L1 -237 5884 5788 2343 92 0 0 chrY 3174393 3174696 -21538383 + AluSg SINE Alu 1 303 -7 47 67 0 0 chrY 3176000 3176089 -21536990 + AT_rich Low_complexity Low_complexity 1 89 0 2038 127 0 0 chrY 3177259 3177564 -21535515 + AluSx SINE Alu 1 305 0 298 291 149 0 chrY 3177788 3177922 -21535157 + MIR3 SINE MIR 32 185 -23 42 86 0 0 chrY 3179998 3180103 -21532976 + AT_rich Low_complexity Low_complexity 1 105 0 297 0 0 0 chrY 3180552 3180585 -21532494 + (CA)n Simple_repeat Simple_repeat 2 34 0 3355 188 23 26 chrY 3180599 3181574 -21531505 - L1 LINE L1 -3663 3902 2934 12652 217 26 39 chrY 3181584 3182694 -21530385 - L1PA12 LINE L1 -2491 5093 3970 1707 71 0 0 chrY 3182694 3182918 -21530161 + L1PA7 LINE L1 5931 6154 0 12652 217 26 39 chrY 3182918 3185623 -21527456 - L1M4 LINE L1 -3614 3970 1 2341 268 47 30 chrY 3185623 3185828 -21527251 + L1M4 LINE L1 3971 4171 -3413 2090 144 33 25 chrY 3185828 3186189 -21526890 + THE1B LTR MaLR 1 364 0 10791 118 13 9 chrY 3186189 3187644 -21525435 + THE1B-int LTR MaLR 1 1464 -116 2206 105 0 3 chrY 3187644 3187940 -21525139 - AluSx SINE Alu -17 295 1 10791 118 13 9 chrY 3187940 3188058 -21525021 + THE1B-int LTR MaLR 1464 1580 0 1940 144 42 33 chrY 3188059 3188419 -21524660 + THE1B LTR MaLR 2 364 0 2341 268 47 30 chrY 3188419 3189311 -21523768 + L1M4 LINE L1 4170 5090 -2494 1472 136 9 0 chrY 3189311 3189532 -21523547 - AluSp SINE Alu 0 313 91 1661 176 84 6 chrY 3189533 3189856 -21523223 - MSTA LTR MaLR -80 348 1 2521 55 3 0 chrY 3189896 3190204 -21522875 - AluY SINE Alu -2 309 1 30 0 0 0 chrY 3192758 3192788 -21520291 + AT_rich Low_complexity Low_complexity 1 30 0 253 148 0 33 chrY 3192909 3192970 -21520109 + L1MC4 LINE L1 6640 6698 -1344 * 6313 132 26 39 chrY 3192969 3194189 -21518890 + L1M1 LINE L1 2263 3467 -4098 2929 178 77 27 chrY 3194189 3194882 -21518197 + LTR8A LTR ERV1 1 727 0 531 275 99 16 chrY 3194882 3195064 -21518015 + HUERS-P1 LTR ERV1 1 197 -6066 4129 179 96 62 chrY 3195215 3196360 -21516719 + HUERS-P1 LTR ERV1 3 1624 -4639 * 11078 152 39 36 chrY 3196357 3196984 -21516095 + HUERS-P1 LTR ERV1 768 1392 -4932 2090 112 0 0 chrY 3196984 3197271 -21515808 + AluY SINE Alu 1 287 -24 11078 152 39 36 chrY 3197271 3200318 -21512761 + HUERS-P1 LTR ERV1 1392 5790 -534 1119 169 63 82 chrY 3200340 3200659 -21512420 + HUERS-P1 LTR ERV1 5914 6226 -105 815 255 111 16 chrY 3200664 3200907 -21512172 + HUERS-P1 LTR ERV1 5994 6259 -4 268 143 0 0 chrY 3200909 3200958 -21512121 + LTR8A LTR ERV1 1 49 -678 8572 182 23 15 chrY 3200960 3203831 -21509248 + L1MA2 LINE L1 3359 6263 -41 2185 140 34 3 chrY 3203831 3204181 -21508898 + THE1B LTR MaLR 1 361 -3 9609 125 32 32 chrY 3204184 3205764 -21507315 + THE1B-int LTR MaLR 1 1580 0 1090 134 0 0 chrY 3205764 3205921 -21507158 + THE1B LTR MaLR 1 157 -207 1156 198 16 43 chrY 3205940 3206198 -21506881 + L1M3 LINE L1 5503 5753 -430 * 4547 252 50 49 chrY 3206193 3208533 -21504546 + L1MB7 LINE L1 119 2584 -4373 25 0 0 0 chrY 3208704 3208729 -21504350 + AT_rich Low_complexity Low_complexity 1 25 0 233 195 0 0 chrY 3208944 3208985 -21504094 + (CA)n Simple_repeat Simple_repeat 2 42 0 2178 258 72 7 chrY 3209027 3209877 -21503202 + L1MB7 LINE L1 2874 3741 -3216 * 3181 246 103 25 chrY 3209871 3210468 -21502611 + L1MB7 LINE L1 4844 5394 -1601 2205 82 28 3 chrY 3210468 3210759 -21502320 + AluSp SINE Alu 1 298 -15 3181 246 103 25 chrY 3210759 3212138 -21500941 + L1MB7 LINE L1 5394 6986 -9 22 0 0 0 chrY 3212616 3212638 -21500441 + AT_rich Low_complexity Low_complexity 1 22 0 2434 281 38 19 chrY 3213261 3214110 -21498969 - L1ME1 LINE L1 -19 6147 5283 11745 208 81 15 chrY 3214117 3218043 -21495036 - L1PA16 LINE L1 -3 6866 2346 225 0 0 0 chrY 3218043 3218068 -21495011 + (TG)n Simple_repeat Simple_repeat 2 26 0 11745 208 81 15 chrY 3218068 3220580 -21492499 - L1PA16 LINE L1 -4523 2346 2 2386 260 27 22 chrY 3220610 3221457 -21491622 - L1ME1 LINE L1 -886 5260 4410 714 268 70 8 chrY 3221458 3221701 -21491378 - L1ME1 LINE L1 -1932 4214 3957 868 270 58 6 chrY 3221708 3222053 -21491026 - L1ME1 LINE L1 -3489 2657 2295 24 0 0 0 chrY 3222703 3222727 -21490352 + AT_rich Low_complexity Low_complexity 1 24 0 26 0 0 0 chrY 3225251 3225277 -21487802 + AT_rich Low_complexity Low_complexity 1 26 0 339 85 0 0 chrY 3225601 3225648 -21487431 + (CA)n Simple_repeat Simple_repeat 2 48 0 220 190 0 63 chrY 3226946 3227025 -21486054 + T-rich Low_complexity Low_complexity 2 75 0 22 0 0 0 chrY 3227663 3227685 -21485394 + AT_rich Low_complexity Low_complexity 1 22 0 2241 173 32 28 chrY 3229074 3229541 -21483538 - L1MC3 LINE L1 -21 7764 7296 1827 198 25 3 chrY 3230036 3230394 -21482685 + MLT2D LTR ERVL 1 366 -48 498 183 15 26 chrY 3230394 3230671 -21482408 + CT-rich Low_complexity Low_complexity 1 274 0 253 343 56 14 chrY 3230836 3230979 -21482100 + MIR SINE MIR 2 150 -112 1594 240 22 3 chrY 3231248 3231606 -21481473 - MLT1A1 LTR MaLR 0 365 1 7267 239 37 11 chrY 3231607 3233297 -21479782 - MLT1A1-int LTR MaLR -1 1734 1 1683 209 44 3 chrY 3233304 3233648 -21479431 - MLT1A1 LTR MaLR -7 358 1 478 272 28 65 chrY 3233880 3234097 -21478982 - L2 LINE L2 -1 3312 3104 288 252 52 35 chrY 3234125 3234240 -21478839 - MLT1L LTR MaLR 0 615 499 432 294 156 9 chrY 3234325 3234536 -21478543 - MLT1L LTR MaLR -228 387 146 186 346 93 9 chrY 3234648 3234755 -21478324 - L2 LINE L2 -1234 2080 1965 1856 299 63 14 chrY 3234761 3235575 -21477504 + L2 LINE L2 1215 2113 -1201 3995 213 18 13 chrY 3235604 3235932 -21477147 - L1MB7 LINE L1 -21 6163 5838 9027 109 13 0 chrY 3235932 3237203 -21475876 - HSMAR1 DNA Mariner 0 1287 1 3995 213 18 13 chrY 3237203 3237359 -21475720 - L1MB7 LINE L1 -346 5838 5684 1514 208 3 13 chrY 3237359 3237685 -21475394 + AluJb SINE Alu 1 312 0 3995 213 18 13 chrY 3237685 3238249 -21474830 - L1MB7 LINE L1 -500 5684 5107 1307 220 70 55 chrY 3238251 3238698 -21474381 - L1MB7 LINE L1 -1447 4699 4241 288 53 0 0 chrY 3238698 3238736 -21474343 + (TG)n Simple_repeat Simple_repeat 2 39 0 1307 220 70 55 chrY 3238736 3238816 -21474263 - L1MB7 LINE L1 -1905 4241 4164 1631 185 20 57 chrY 3238832 3239237 -21473842 - MLT1B LTR MaLR 0 390 1 5237 233 19 39 chrY 3239237 3240082 -21472997 - L1M4c LINE L1 -1844 5113 4310 261 0 0 0 chrY 3240082 3240111 -21472968 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 5237 233 19 39 chrY 3240111 3240803 -21472276 - L1M4c LINE L1 -2647 4310 3606 4635 146 39 3 chrY 3240819 3241924 -21471155 + L1PA12 LINE L1 4903 6040 -128 2096 121 71 6 chrY 3241924 3242264 -21470815 + THE1B LTR MaLR 1 362 -2 6121 118 7 4 chrY 3242266 3243165 -21469914 + THE1B-int LTR MaLR 1 901 -679 930 191 48 48 chrY 3243167 3243377 -21469702 + THE1B LTR MaLR 153 362 -2 835 63 18 0 chrY 3243379 3243490 -21469589 + L1PA13 LINE L1 6036 6148 -15 23 68 0 0 chrY 3243514 3243558 -21469521 + AT_rich Low_complexity Low_complexity 1 44 0 4759 265 39 22 chrY 3243568 3247828 -21465251 - L1PBa LINE L1 -3387 3475 27 516 282 64 32 chrY 3247868 3248308 -21464771 - L1M4c LINE L1 -4099 3039 2586 956 275 57 51 chrY 3248458 3248720 -21464359 - L1M4c LINE L1 -4452 2686 2427 2119 109 0 23 chrY 3248720 3249023 -21464056 - AluSp SINE Alu -17 296 1 956 275 57 51 chrY 3249023 3249385 -21463694 - L1M4c LINE L1 -4711 2427 1907 * 3594 291 34 14 chrY 3249383 3250432 -21462647 - L1M4c LINE L1 -5782 1077 8 4373 168 37 28 chrY 3250688 3250970 -21462109 + L1MA5 LINE L1 4728 5006 -1294 800 235 0 25 chrY 3250970 3251132 -21461947 + FAM SINE Alu 1 158 -17 4373 168 37 28 chrY 3251132 3252244 -21460835 + L1MA5 LINE L1 5006 6119 -181 1081 191 106 50 chrY 3252246 3252665 -21460414 + LTR22 LTR ERVK 1 509 0 2029 128 0 0 chrY 3252665 3252985 -21460094 - AluY SINE Alu 0 320 1 998 144 39 0 chrY 3252985 3253165 -21459914 + L1MA5 LINE L1 6108 6294 -6 4684 204 28 26 chrY 3253410 3254685 -21458394 - L1MA10 LINE L1 -14 6320 5038 269 305 104 36 chrY 3254832 3255245 -21457834 + L1 LINE L1 3718 4158 -1988 380 304 96 30 chrY 3255388 3255618 -21457461 + L1 LINE L1 4311 4555 -1591 6243 68 2 0 chrY 3255711 3256511 -21456568 - L1PA8 LINE L1 -5 6167 5366 1761 102 0 4 chrY 3256508 3256773 -21456306 + L1PA8 LINE L1 5076 5339 -807 * 953 259 124 45 chrY 3256965 3257432 -21455647 - MLT1J LTR MaLR -7 504 1 205 194 0 0 chrY 3257472 3257508 -21455571 - MER5A DNA MER1_type 0 189 154 1591 236 67 8 chrY 3257511 3257872 -21455207 + MLT1E LTR MaLR 206 587 -6 402 285 5 113 chrY 3258158 3258379 -21454700 - MER3 DNA MER1_type 0 209 13 932 276 114 52 chrY 3258683 3259147 -21453932 + HsTC2a DNA Tc2 3 495 -249 849 206 0 0 chrY 3259156 3259297 -21453782 - FRAM SINE Alu -23 153 13 560 209 118 14 chrY 3259305 3259516 -21453563 + HsTC2a DNA Tc2 499 731 -11 264 258 0 22 chrY 3259528 3259617 -21453462 + (TAA)n Simple_repeat Simple_repeat 3 89 0 28 29 0 0 chrY 3260191 3260226 -21452853 + AT_rich Low_complexity Low_complexity 1 35 0 555 305 79 41 chrY 3260232 3260626 -21452453 + MLT1H1 LTR MaLR 1 409 -146 2486 168 34 6 chrY 3260741 3261241 -21451838 + L1MA3 LINE L1 5786 6299 -6 480 282 84 19 chrY 3261454 3261627 -21451452 + L1MC4 LINE L1 7446 7637 -405 1705 197 28 17 chrY 3261627 3261988 -21451091 - MLT1A1 LTR MaLR 0 365 1 480 282 84 19 chrY 3261988 3262027 -21451052 + L1MC4 LINE L1 7637 7672 -370 676 211 66 13 chrY 3262042 3262194 -21450885 + MER31B LTR ERV1 1 160 -306 3769 182 68 73 chrY 3262238 3263157 -21449922 + MER21A LTR ERV1 1 914 -17 611 237 58 48 chrY 3263188 3263395 -21449684 + MER31B LTR ERV1 254 462 -4 23 0 0 0 chrY 3263541 3263564 -21449515 + AT_rich Low_complexity Low_complexity 1 23 0 210 128 0 0 chrY 3263608 3263647 -21449432 + (TG)n Simple_repeat Simple_repeat 2 40 0 852 257 29 86 chrY 3263884 3264258 -21448821 - HsTC2c DNA Tc2 -3 726 374 391 245 0 0 chrY 3264400 3264494 -21448585 + L1 LINE L1 5203 5296 -850 189 0 0 0 chrY 3264494 3264515 -21448564 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 4143 143 18 83 chrY 3264518 3265411 -21447668 + L1PA6 LINE L1 5309 6143 -11 207 0 0 0 chrY 3265414 3265437 -21447642 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 409 304 82 62 chrY 3265603 3265846 -21447233 - MLT1G1 LTR MaLR -185 410 163 358 285 78 43 chrY 3266062 3266522 -21446557 + L1 LINE L1 4759 5234 -912 266 344 8 8 chrY 3266791 3266913 -21446166 + CT-rich Low_complexity Low_complexity 1 122 0 4519 273 32 21 chrY 3267028 3268016 -21445063 + L1PBa LINE L1 7 1064 -5799 408 20 0 0 chrY 3268016 3268065 -21445014 + (CA)n Simple_repeat Simple_repeat 2 50 0 4519 273 32 21 chrY 3268065 3268637 -21444442 + L1PBa LINE L1 1064 1628 -5235 * 4522 199 64 10 chrY 3268613 3269552 -21443527 + L1PA15 LINE L1 660 1649 -5214 33 25 0 0 chrY 3269553 3269593 -21443486 + AT_rich Low_complexity Low_complexity 1 40 0 7037 214 26 82 chrY 3269593 3271209 -21441870 + L1PA15 LINE L1 1952 3656 -3206 800 204 34 0 chrY 3271209 3271356 -21441723 + AluSp SINE Alu 132 283 -30 180 0 0 0 chrY 3271359 3271379 -21441700 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 7037 214 26 82 chrY 3271379 3272730 -21440349 + L1PA15 LINE L1 3658 4982 -1880 2870 283 58 9 chrY 3272718 3274073 -21439006 + L1M4 LINE L1 2367 3788 -2358 * 5153 192 10 9 chrY 3274166 3275617 -21437462 + L1PA15 LINE L1 5068 6520 -361 585 88 0 0 chrY 3275617 3275697 -21437382 - MADE1 DNA Mariner 0 80 1 5153 192 10 9 chrY 3275697 3276037 -21437042 + L1PA15 LINE L1 6520 6858 -23 243 0 0 0 chrY 3276044 3276071 -21437008 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 559 244 81 11 chrY 3276073 3276376 -21436703 + MSTD LTR MaLR 32 396 0 1493 218 64 8 chrY 3276445 3276803 -21436276 + MSTB1 LTR MaLR 3 380 -52 1739 270 20 30 chrY 3276812 3277138 -21435941 - L1 LINE L1 -3381 2765 2446 528 16 0 0 chrY 3277138 3277199 -21435880 + (TA)n Simple_repeat Simple_repeat 2 62 0 1739 270 20 30 chrY 3277199 3277472 -21435607 - L1 LINE L1 -3700 2446 2172 6207 152 12 3 chrY 3277482 3278724 -21434355 - L1MA1 LINE L1 -7 7714 6461 7027 200 28 20 chrY 3279273 3279352 -21433727 - L1MA1 LINE L1 -1097 6468 6391 1654 150 48 58 chrY 3279352 3279731 -21433348 - THE1C LTR MaLR 0 375 1 7027 200 28 20 chrY 3279731 3281313 -21431766 - L1MA1 LINE L1 -1174 6391 4793 * 18062 197 24 20 chrY 3281311 3283891 -21429188 - L1MA1 LINE L1 -3198 4367 1759 183 42 0 0 chrY 3283891 3283915 -21429164 + (TC)n Simple_repeat Simple_repeat 1 24 0 18062 197 24 20 chrY 3283915 3285620 -21427459 - L1MA1 LINE L1 -5806 1759 63 391 186 30 46 chrY 3285620 3285738 -21427341 + MSTB1 LTR MaLR 249 432 0 187 255 78 98 chrY 3287271 3287373 -21425706 + MIR SINE MIR 137 236 -26 283 288 12 12 chrY 3288060 3288140 -21424939 + HAL1 LINE L1 757 836 -1671 300 281 42 10 chrY 3288214 3288310 -21424769 + L1MEc LINE L1 380 478 -5918 1365 285 41 32 chrY 3288338 3288839 -21424240 + L1MEc LINE L1 46 599 -5797 2291 98 0 7 chrY 3288839 3289144 -21423935 - AluSq SINE Alu -8 305 3 1365 285 41 32 chrY 3289144 3289321 -21423758 + L1MEc LINE L1 599 773 -5623 362 251 181 17 chrY 3289342 3289629 -21423450 + L1MEc LINE L1 980 1313 -5083 1246 256 89 32 chrY 3289655 3290131 -21422948 - LTR40b LTR ERVL 0 462 3 619 215 7 20 chrY 3290131 3290279 -21422800 - MER3 DNA MER1_type -51 158 13 350 325 40 8 chrY 3290322 3290448 -21422631 - MIR SINE MIR -76 186 57 729 280 144 89 chrY 3290486 3290586 -21422493 + MLT1G1 LTR MaLR 1 94 -501 1611 104 27 5 chrY 3290586 3290806 -21422273 + AluSg SINE Alu 1 225 -85 729 280 144 89 chrY 3290806 3291269 -21421810 + MLT1G1 LTR MaLR 94 595 0 2242 180 56 7 chrY 3292506 3292933 -21420146 + MER83 LTR ERV1 1 448 0 1387 183 23 12 chrY 3292933 3293190 -21419889 + MER83-int LTR ERV1 12 271 -4014 535 105 0 0 chrY 3293190 3293266 -21419813 + MSTA LTR MaLR 353 428 0 4084 123 63 11 chrY 3293266 3293915 -21419164 + MSTA-int LTR MaLR 1 683 -897 894 103 76 19 chrY 3293915 3294097 -21418982 + THE1C LTR MaLR 221 375 0 920 307 65 43 chrY 3294435 3294977 -21418102 - HUERS-P3 LTR ERV1 -1298 5231 4692 456 313 44 67 chrY 3295280 3295851 -21417228 - HUERS-P3 LTR ERV1 -1797 5294 3971 276 346 26 6 chrY 3295956 3296112 -21416967 - HUERS-P3 LTR ERV1 -4280 4639 4481 5116 126 7 0 chrY 3296141 3297259 -21415820 - THE1C-int LTR MaLR -413 1167 3 1942 144 87 17 chrY 3297261 3297607 -21415472 - THE1C LTR MaLR 0 375 6 23 0 0 0 chrY 3298339 3298362 -21414717 + AT_rich Low_complexity Low_complexity 1 23 0 2098 185 28 3 chrY 3298407 3298797 -21414282 + MER50-int LTR ERV1 1927 2326 -1959 382 338 62 40 chrY 3299781 3300201 -21412878 + MER50-int LTR ERV1 6257 6685 -520 10931 211 34 59 chrY 3300389 3300822 -21412257 - L1M1 LINE L1 -5073 2492 2049 4702 107 58 69 chrY 3300822 3301653 -21411426 - LTR12 LTR ERV1 0 826 5 10931 211 34 59 chrY 3301653 3304250 -21408829 - L1M1 LINE L1 -5516 2049 17 323 85 34 0 chrY 3305312 3305371 -21407708 + (TCTA)n Simple_repeat Simple_repeat 4 64 0 241 238 0 0 chrY 3305354 3305417 -21407662 + MLT2B1 LTR ERVL 458 520 0 564 384 98 18 chrY 3306231 3306668 -21406411 - L2 LINE L2 -653 2661 2190 617 256 26 67 chrY 3307013 3307139 -21405940 + MIR SINE MIR 4 116 -146 1733 168 4 0 chrY 3307139 3307462 -21405617 - AluJb SINE Alu 0 324 1 617 256 26 67 chrY 3307462 3307604 -21405475 + MIR SINE MIR 116 262 0 483 359 70 16 chrY 3308121 3308550 -21404529 - L2 LINE L2 -1195 2119 1668 2278 100 0 7 chrY 3308602 3308911 -21404168 + AluSg SINE Alu 1 307 -3 259 349 19 9 chrY 3310237 3310343 -21402736 - MIR SINE MIR -105 157 51 563 291 93 0 chrY 3310727 3310909 -21402170 + MLT1E3 LTR MaLR 1 199 -425 450 235 35 0 chrY 3310927 3311042 -21402037 - L1MA9 LINE L1 -22 6290 6172 891 212 35 0 chrY 3311046 3311244 -21401835 - L1MA9 LINE L1 -241 6071 5867 1379 239 68 24 chrY 3311279 3311659 -21401420 + MLT1E3 LTR MaLR 223 619 -5 1191 228 35 25 chrY 3311941 3312257 -21400822 - PABL_B LTR ERV1 0 667 349 295 336 34 39 chrY 3312270 3312478 -21400601 - PABL_B LTR ERV1 -460 207 1 941 243 16 78 chrY 3313139 3313588 -21399491 + L1MB4 LINE L1 609 1029 -5251 507 252 0 67 chrY 3313588 3313632 -21399447 + MER21B LTR ERV1 328 373 -490 2350 118 78 10 chrY 3313632 3314029 -21399050 - MSTA LTR MaLR 0 428 5 507 252 0 67 chrY 3314029 3314103 -21398976 + MER21B LTR ERV1 373 438 -425 2158 190 5 12 chrY 3314240 3314645 -21398434 + MER21B LTR ERV1 455 856 -7 1209 172 10 0 chrY 3314676 3314880 -21398199 + MER21B-int LTR ERV1 18 223 -3968 3079 146 36 9 chrY 3314880 3315477 -21397602 + MER4B LTR ERV1 1 779 0 2126 170 8 16 chrY 3315477 3315859 -21397220 + MER21B-int LTR ERV1 220 598 -3593 3436 154 11 75 chrY 3315859 3316597 -21396482 - LTR8 LTR ERV1 0 691 1 1313 211 13 0 chrY 3316597 3316834 -21396245 + MER21B-int LTR ERV1 1561 1800 -2391 3551 206 22 44 chrY 3316863 3317169 -21395910 + MER21B-int LTR ERV1 1644 1955 -2236 2154 145 47 28 chrY 3317169 3317597 -21395482 + LTR23 LTR ERV1 2 437 0 3551 206 22 44 chrY 3317597 3318105 -21394974 + MER21B-int LTR ERV1 1955 2440 -1751 18049 84 11 12 chrY 3318105 3323836 -21389243 + L1PA6 LINE L1 365 6153 -1 8897 170 45 22 chrY 3323932 3325595 -21387484 + MER21B-int LTR ERV1 2428 4129 -62 2190 232 85 0 chrY 3325680 3326141 -21386938 + MER21B LTR ERV1 1 500 -363 4453 269 77 15 chrY 3326141 3329507 -21383572 + L1MB4 LINE L1 1030 4721 -1661 3336 104 2 0 chrY 3329513 3329965 -21383114 + MLT2A2 LTR ERVL 1 453 0 41522 97 10 2 chrY 3329966 3335575 -21377504 + HERVL-A2 LTR ERVL 2 5654 0 3306 104 4 0 chrY 3335575 3336026 -21377053 + MLT2A2 LTR ERVL 1 453 0 260 197 0 16 chrY 3336041 3336102 -21376977 + L1MB4 LINE L1 4769 4828 -1554 637 179 41 16 chrY 3336124 3336247 -21376832 - FLAM_C SINE Alu -17 126 1 3177 212 99 11 chrY 3336303 3337730 -21375349 + L1MB4 LINE L1 4875 6416 0 431 262 87 59 chrY 3337797 3338186 -21374893 + L1ME3A LINE L1 1173 1572 -4958 31 113 0 0 chrY 3338261 3338411 -21374668 + AT_rich Low_complexity Low_complexity 1 150 0 269 316 27 0 chrY 3338448 3338626 -21374453 + L1ME3A LINE L1 1675 1911 -990 25 31 0 0 chrY 3338841 3338873 -21374206 + AT_rich Low_complexity Low_complexity 1 32 0 353 331 99 11 chrY 3339070 3339401 -21373678 + L1ME3A LINE L1 2334 2684 -3856 229 225 72 45 chrY 3339539 3339650 -21373429 + L1MC5 LINE L1 7331 7444 -517 428 268 36 14 chrY 3339728 3339948 -21373131 + L1MC5 LINE L1 7555 7779 -182 1832 108 37 65 chrY 3340080 3340432 -21372647 + L1MA9 LINE L1 5971 6312 0 21 0 0 0 chrY 3340435 3340456 -21372623 + AT_rich Low_complexity Low_complexity 1 21 0 442 297 14 62 chrY 3340606 3340815 -21372264 - MLT1K LTR MaLR -12 576 378 562 258 126 28 chrY 3343228 3343584 -21369495 + L1ME3A LINE L1 4955 5345 -1195 386 279 37 25 chrY 3343646 3343807 -21369272 + LTR65 LTR ERV1 2 164 -505 323 247 17 33 chrY 3343992 3344112 -21368967 + LTR65 LTR ERV1 539 604 -10 525 257 15 80 chrY 3344122 3344461 -21368618 + L1ME3A LINE L1 5402 5718 -822 1148 261 23 37 chrY 3344511 3344944 -21368135 + L1ME3A LINE L1 5947 6373 -191 1788 215 18 5 chrY 3345602 3345984 -21367095 - MLT1B LTR MaLR -3 387 1 27 0 0 0 chrY 3346026 3346053 -21367026 + AT_rich Low_complexity Low_complexity 1 27 0 1127 173 40 108 chrY 3346163 3346515 -21366564 + MLT1B LTR MaLR 1 328 -62 655 275 26 11 chrY 3346515 3346704 -21366375 - MLT1A1 LTR MaLR 0 365 174 460 192 102 114 chrY 3346772 3346939 -21366140 - MLT1A1 LTR MaLR -171 194 30 286 203 17 0 chrY 3346952 3347011 -21366068 + MLT1B LTR MaLR 331 390 0 5009 152 4 0 chrY 3347155 3348675 -21364404 - L1PA13 LINE L1 0 6814 5282 1135 125 0 0 chrY 3348675 3348827 -21364252 - AluSp SINE Alu -28 285 134 13165 222 23 16 chrY 3348832 3354056 -21359023 - L1PA13 LINE L1 -1510 5287 1 556 190 10 2 chrY 3354113 3354226 -21358853 + L1ME LINE L1 5618 5727 -439 246 219 0 0 chrY 3354354 3354418 -21358661 + (TA)n Simple_repeat Simple_repeat 2 65 0 222 159 23 0 chrY 3354478 3354522 -21358557 + A-rich Low_complexity Low_complexity 1 45 0 365 347 92 20 chrY 3354608 3355052 -21358027 + L1MEc LINE L1 55 530 -5866 295 265 22 49 chrY 3355160 3355345 -21357734 + L1MEc LINE L1 688 867 -5529 * 2168 258 30 27 chrY 3355326 3356218 -21356861 + L1MEc LINE L1 2345 3239 -2976 231 163 0 0 chrY 3356239 3356282 -21356797 - L1PA15-16 LINE L1 -4015 2834 2792 3033 116 28 47 chrY 3356327 3356855 -21356224 + L1PA13 LINE L1 5645 6162 -1 3163 255 37 21 chrY 3356865 3357981 -21355098 + L1 LINE L1 2148 3280 -2866 2361 133 24 5 chrY 3357980 3358355 -21354724 + MSTA-int LTR MaLR 1270 1651 0 * 2212 133 84 30 chrY 3358355 3358415 -21354664 + MSTA LTR MaLR 1 56 -372 2121 132 0 0 chrY 3358415 3358711 -21354368 + AluSx SINE Alu 1 296 -16 2212 133 84 30 chrY 3358711 3359056 -21354023 + MSTA LTR MaLR 56 428 0 416 141 26 0 chrY 3359724 3359802 -21353277 + MADE1 DNA Mariner 1 80 0 210 37 0 0 chrY 3360213 3360240 -21352839 + (TC)n Simple_repeat Simple_repeat 2 28 0 252 234 28 28 chrY 3360242 3360383 -21352696 + (TATAA)n Simple_repeat Simple_repeat 5 145 0 21 57 0 0 chrY 3360837 3360872 -21352207 + AT_rich Low_complexity Low_complexity 1 35 0 337 293 77 24 chrY 3360917 3361163 -21351916 - L1MC5 LINE L1 -209 7752 7494 599 211 184 14 chrY 3361189 3361336 -21351743 + MER5A DNA MER1_type 17 188 -1 252 337 0 0 chrY 3361338 3361427 -21351652 - L1MC5 LINE L1 -527 7434 7346 1204 287 91 48 chrY 3361605 3363152 -21349927 - L1MC4 LINE L1 -735 7226 5612 1395 256 72 88 chrY 3363173 3363728 -21349351 + MLT2B3 LTR ERVL 1 546 -8 1652 232 32 22 chrY 3363732 3364133 -21348946 - LTR52 LTR ERVL -10 411 7 542 240 101 29 chrY 3364133 3364227 -21348852 - L1MC4 LINE L1 -2215 5593 5507 183 42 0 0 chrY 3364227 3364251 -21348828 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 542 240 101 29 chrY 3364251 3364364 -21348715 - L1MC4 LINE L1 -2301 5507 5371 24 0 0 0 chrY 3364482 3364506 -21348573 + AT_rich Low_complexity Low_complexity 1 24 0 493 201 186 25 chrY 3366490 3366689 -21346390 - L1MC/D LINE L1 -2323 5554 5324 245 314 69 25 chrY 3366943 3367188 -21345891 - L1MC/D LINE L1 -1167 5048 4793 3633 142 44 64 chrY 3367426 3368130 -21344949 + LTR8 LTR ERV1 2 691 0 734 189 154 12 chrY 3368138 3368307 -21344772 - MER6B DNA MER2_type -3 207 15 245 326 0 11 chrY 3370559 3370648 -21342431 - Charlie8 DNA MER1_type -2199 218 131 672 241 14 50 chrY 3371935 3372311 -21340768 - L1MEc LINE L1 -3669 2546 688 467 349 36 45 chrY 3372337 3372669 -21340410 - L1MEc LINE L1 -5830 566 238 323 306 31 0 chrY 3374271 3374369 -21338710 + L1MC4 LINE L1 6602 6702 -1340 2131 124 7 7 chrY 3374464 3374771 -21338308 + AluSg1 SINE Alu 1 307 -2 433 182 91 0 chrY 3374838 3374937 -21338142 - L1ME LINE L1 -439 5727 5620 16923 209 31 9 chrY 3375000 3379196 -21333883 + L1PA13 LINE L1 1 4468 -2346 180 0 0 0 chrY 3379196 3379216 -21333863 + (CAA)n Simple_repeat Simple_repeat 2 21 0 16923 209 31 9 chrY 3379216 3381613 -21331466 + L1PA13 LINE L1 4468 6811 -3 5754 201 25 29 chrY 3382699 3384198 -21328881 + L1PB1 LINE L1 3871 5363 -783 894 106 0 8 chrY 3384191 3384323 -21328756 + L1PA11 LINE L1 5725 5855 -319 * 5077 110 26 3 chrY 3384322 3385083 -21327996 + L1PB1 LINE L1 5367 6145 -6 249 362 75 32 chrY 3385120 3385308 -21327771 - MLT1K LTR MaLR -188 400 205 2909 155 8 10 chrY 3385558 3386055 -21327024 + L1PA13 LINE L1 5668 6163 0 244 277 24 0 chrY 3386057 3386140 -21326939 - L1M4 LINE L1 -1587 4559 4475 1877 243 34 22 chrY 3386164 3386610 -21326469 - L1M3 LINE L1 -393 5790 5336 2129 127 3 3 chrY 3386610 3386909 -21326170 - AluSx SINE Alu -13 299 1 1877 243 34 22 chrY 3386909 3387068 -21326011 - L1M3 LINE L1 -847 5336 5180 5138 202 9 36 chrY 3387072 3387773 -21325306 - MSTA-int LTR MaLR -610 1041 323 2240 114 0 10 chrY 3387773 3388080 -21324999 - AluSx SINE Alu -5 307 4 5138 202 9 36 chrY 3388080 3388096 -21324983 - MSTA-int LTR MaLR -1328 323 308 2108 102 0 60 chrY 3388096 3388411 -21324668 - AluSg SINE Alu -12 298 3 5138 202 9 36 chrY 3388411 3388574 -21324505 - MSTA-int LTR MaLR -1343 308 192 3046 186 26 2 chrY 3388574 3389118 -21323961 - MER41D LTR ERV1 0 557 1 5138 202 9 36 chrY 3389118 3389305 -21323774 - MSTA-int LTR MaLR -1459 192 1 2249 165 54 2 chrY 3389305 3389712 -21323367 - MSTA LTR MaLR 0 428 1 2032 136 10 0 chrY 3389987 3390282 -21322797 - AluSg SINE Alu -12 298 1 26 0 0 0 chrY 3390321 3390347 -21322732 + AT_rich Low_complexity Low_complexity 1 26 0 482 276 111 19 chrY 3390374 3390889 -21322190 - L1M3 LINE L1 -1445 4701 4140 660 215 27 16 chrY 3390986 3391172 -21321907 - MER53 DNA DNA 0 189 2 256 290 91 46 chrY 3391627 3392614 -21320465 - L1M3 LINE L1 -2663 3483 2452 1275 233 73 59 chrY 3392701 3393135 -21319944 - MLT2C2 LTR ERVL -20 534 1 307 238 171 45 chrY 3393170 3393439 -21319640 - L1M3 LINE L1 -3734 2412 2110 27 0 0 0 chrY 3393829 3393856 -21319223 + AT_rich Low_complexity Low_complexity 1 27 0 1068 78 0 0 chrY 3393867 3393995 -21319084 + AluSq/x SINE Alu 6 133 -180 219 69 0 0 chrY 3393995 3394024 -21319055 + (A)n Simple_repeat Simple_repeat 1 29 0 256 150 0 0 chrY 3394042 3394082 -21318997 + Alu SINE Alu 252 291 -11 624 274 48 6 chrY 3394454 3394622 -21318457 - MER20 DNA MER1_type -11 208 34 236 116 93 0 chrY 3394655 3394698 -21318381 - MLT1D LTR MaLR -9 496 450 17317 191 45 38 chrY 3394702 3398220 -21314859 + L1MA2 LINE L1 12 3504 -4219 195 42 0 0 chrY 3398220 3398244 -21314835 + (GGAGA)n Simple_repeat Simple_repeat 1 24 0 17317 191 45 38 chrY 3398244 3398350 -21314729 + L1MA2 LINE L1 3504 3608 -4115 2307 82 0 0 chrY 3398350 3398691 -21314388 + AluY SINE Alu 1 311 0 17317 191 45 38 chrY 3398691 3401248 -21311831 + L1MA2 LINE L1 3608 6290 -1433 1902 88 0 0 chrY 3401248 3401487 -21311592 + AluY SINE Alu 1 239 -72 17317 191 45 38 chrY 3401487 3402932 -21310147 + L1MA2 LINE L1 6290 7723 0 279 79 0 0 chrY 3402989 3403027 -21310052 + (A)n Simple_repeat Simple_repeat 1 38 0 434 327 39 13 chrY 3403058 3403364 -21309715 + L1 LINE L1 4701 5014 -1132 434 165 0 10 chrY 3403670 3403767 -21309312 + SVA Other Other 432 527 -859 5537 102 21 5 chrY 3403871 3404760 -21308319 - MER51-int LTR ERV1 -5103 2713 1810 676 188 19 117 chrY 3404760 3404938 -21308141 - MER4A LTR ERV1 -130 517 364 281 167 0 0 chrY 3404980 3405028 -21308051 - MER4A LTR ERV1 -566 98 51 4322 151 44 24 chrY 3405028 3405446 -21307633 - MER51-int LTR ERV1 -6305 1511 1068 2091 114 7 10 chrY 3405446 3405753 -21307326 - AluSg SINE Alu -3 307 2 4322 151 44 24 chrY 3405753 3406127 -21306952 - MER51-int LTR ERV1 -6748 1068 703 3466 53 2 7 chrY 3406127 3406577 -21306502 + LTR7 LTR ERV1 1 448 -2 17113 96 6 25 chrY 3406579 3409603 -21303476 + HERVH LTR ERV1 1 2987 -4726 839 150 27 0 chrY 3409597 3409744 -21303335 + HERVH LTR ERV1 3140 3290 -4423 * 1340 149 0 5 chrY 3409734 3409948 -21303131 + HERVH LTR ERV1 3492 3704 -4009 1350 137 17 17 chrY 3410034 3410267 -21302812 + HERVH LTR ERV1 5587 5819 -1894 2055 70 55 16 chrY 3410290 3410602 -21302477 + HERVH LTR ERV1 7390 7713 0 3334 62 2 7 chrY 3410602 3411052 -21302027 + LTR7 LTR ERV1 1 448 -2 3562 174 56 16 chrY 3411052 3411734 -21301345 - MER51B-int LTR ERV1 -7107 709 1 2341 119 57 0 chrY 3411738 3412091 -21300988 - MER51B LTR ERV1 -4 373 1 2290 65 7 19 chrY 3412284 3412591 -21300488 + AluY SINE Alu 1 303 -8 4744 128 31 7 chrY 3412767 3413518 -21299561 + MER4E LTR ERV1 1 769 -10 22 35 0 0 chrY 3413871 3413900 -21299179 + AT_rich Low_complexity Low_complexity 1 29 0 1238 191 17 8 chrY 3414677 3414913 -21298166 + AluJb SINE Alu 66 303 -9 519 17 0 0 chrY 3415102 3415162 -21297917 + (TAGA)n Simple_repeat Simple_repeat 2 61 0 514 295 70 0 chrY 3415373 3415529 -21297550 - MIR SINE MIR -42 220 54 8903 221 27 12 chrY 3415574 3417448 -21295631 + L1MA4 LINE L1 14 1915 -5650 279 350 35 2 chrY 3417555 3417986 -21295093 + L1MA1 LINE L1 5858 6302 0 288 77 0 0 chrY 3418043 3418082 -21294997 + (A)n Simple_repeat Simple_repeat 1 39 0 4785 173 70 37 chrY 3418100 3418718 -21294361 + L1MA4 LINE L1 6100 6696 -1023 2248 117 0 0 chrY 3418718 3419027 -21294052 + AluSc SINE Alu 1 309 0 4785 173 70 37 chrY 3419027 3419964 -21293115 + L1MA4 LINE L1 6696 7708 -11 2365 71 3 0 chrY 3419964 3420259 -21292820 - AluY SINE Alu -15 296 1 1542 252 63 43 chrY 3420338 3420783 -21292296 - MLT1D LTR MaLR -51 454 1 378 323 44 44 chrY 3420784 3420942 -21292137 - MLT1H LTR MaLR -210 339 182 387 191 53 11 chrY 3421204 3421298 -21291781 - L1MEd LINE L1 -4867 1252 1155 260 241 55 21 chrY 3421335 3421480 -21291599 - HAL1 LINE L1 -335 2172 2023 1361 101 10 0 chrY 3421865 3422063 -21291016 + L1PB1 LINE L1 5950 6149 -2 22 0 0 0 chrY 3422064 3422086 -21290993 + AT_rich Low_complexity Low_complexity 1 22 0 1416 255 125 33 chrY 3422114 3422816 -21290263 + HAL1 LINE L1 1010 1776 -731 5431 257 14 10 chrY 3422894 3425140 -21287939 - L1PA12 LINE L1 -3154 4430 2233 308 360 13 20 chrY 3425709 3425862 -21287217 - L1PA12 LINE L1 -5269 2305 2154 693 404 25 18 chrY 3426046 3426482 -21286597 - L1PA12 LINE L1 -6348 1226 788 1867 221 26 0 chrY 3426493 3426873 -21286206 - MER57A LTR ERV1 -6 397 8 2291 109 0 0 chrY 3427301 3427605 -21285474 + AluY SINE Alu 1 304 -7 537 192 295 17 chrY 3428527 3428839 -21284240 + LTR29 LTR ERV1 1 424 -198 * 777 160 72 46 chrY 3428807 3429001 -21284078 + LTR49 LTR ERV1 395 593 -2 224 352 48 8 chrY 3429511 3429636 -21283443 - L2 LINE L2 -43 3270 3141 696 343 53 60 chrY 3429802 3429823 -21283256 - L2 LINE L2 -157 3156 3136 378 0 0 0 chrY 3429823 3429865 -21283214 + (TA)n Simple_repeat Simple_repeat 2 43 0 696 343 53 60 chrY 3429865 3430581 -21282498 - L2 LINE L2 -177 3136 2435 1156 201 69 3 chrY 3431433 3431722 -21281357 + L1MB5 LINE L1 5616 5923 -251 3550 246 25 37 chrY 3431740 3432880 -21280199 + L1MB5 LINE L1 4194 5319 -827 3048 205 50 72 chrY 3432885 3433186 -21279893 + L1MB5 LINE L1 5274 5580 -594 1141 248 92 86 chrY 3433186 3433794 -21279285 + LTR9 LTR ERV1 1 612 0 3048 205 50 72 chrY 3433794 3434411 -21278668 + L1MB5 LINE L1 5580 6172 -2 2418 101 62 0 chrY 3435300 3435655 -21277424 - MER51B LTR ERV1 0 377 1 7670 150 81 43 chrY 3435659 3437754 -21275325 - MER51B-int LTR ERV1 -4 7812 5407 1869 139 8 6 chrY 3437748 3438138 -21274941 - MER51-int LTR ERV1 -2570 2647 2213 * 1809 154 78 17 chrY 3438134 3438595 -21274484 - MER51-int LTR ERV1 -2774 3172 1474 * 381 141 103 0 chrY 3438567 3438645 -21274434 - MER51-int LTR ERV1 -4489 3327 3242 * 1521 134 100 3 chrY 3438628 3438948 -21274131 - MER51-int LTR ERV1 -4755 3061 2711 1622 183 42 28 chrY 3438981 3439412 -21273667 + SVA Other Other 432 868 -518 6073 149 31 5 chrY 3439583 3440695 -21272384 + L1MA1 LINE L1 1893 3033 -4532 * 10149 206 19 2 chrY 3440693 3442446 -21270633 + L1MA1 LINE L1 4342 6144 -1421 186 43 0 0 chrY 3442446 3442469 -21270610 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 10149 206 19 2 chrY 3442469 3442997 -21270082 + L1MA1 LINE L1 6144 6662 -903 1628 153 220 11 chrY 3442997 3443182 -21269897 - MSTA LTR MaLR 0 428 283 180 0 0 0 chrY 3443182 3443202 -21269877 + (GA)n Simple_repeat Simple_repeat 1 20 0 1628 153 220 11 chrY 3443202 3443370 -21269709 - MSTA LTR MaLR -145 283 1 9438 144 7 35 chrY 3443370 3444992 -21268087 - MSTA-int LTR MaLR 0 1580 3 1206 181 141 82 chrY 3444994 3445348 -21267731 - MSTA LTR MaLR 0 428 1 6335 118 36 9 chrY 3445363 3446384 -21266695 + L1MA1 LINE L1 6673 7721 0 278 133 0 0 chrY 3446391 3446436 -21266643 + L1PA16 LINE L1 6120 6164 -2 2947 6 0 0 chrY 3447567 3447885 -21265194 + AluYb8 SINE Alu 1 318 0 486 33 0 0 chrY 3448083 3448143 -21264936 + (CA)n Simple_repeat Simple_repeat 1 60 0 27 29 0 0 chrY 3448144 3448178 -21264901 + AT_rich Low_complexity Low_complexity 1 34 0 490 178 69 23 chrY 3449121 3449295 -21263784 - MER53 DNA DNA -1 188 7 22 94 0 0 chrY 3449378 3449442 -21263637 + AT_rich Low_complexity Low_complexity 1 64 0 203 316 105 0 chrY 3449939 3450034 -21263045 - MIR SINE MIR -54 208 104 1412 258 31 19 chrY 3450060 3450478 -21262601 + L1ME1 LINE L1 5695 6117 -49 36 53 0 0 chrY 3450483 3450540 -21262539 + AT_rich Low_complexity Low_complexity 1 57 0 22 0 0 0 chrY 3450855 3450877 -21262202 + AT_rich Low_complexity Low_complexity 1 22 0 1175 251 59 20 chrY 3450906 3451353 -21261726 + L1ME2 LINE L1 5764 6155 -9 25 31 0 0 chrY 3451354 3451386 -21261693 + AT_rich Low_complexity Low_complexity 1 32 0 196 280 67 13 chrY 3452126 3452201 -21260878 + L2 LINE L2 3164 3242 -71 1991 213 72 0 chrY 3452241 3452631 -21260448 - MER47B DNA MER2_type 0 418 1 624 353 19 8 chrY 3453147 3453405 -21259674 + MIR SINE MIR 1 261 -1 5781 116 12 3 chrY 3455414 3456490 -21256589 - L1PB1 LINE L1 0 6151 5069 239 200 0 0 chrY 3456498 3456558 -21256521 + L1 LINE L1 4560 4619 -1527 1909 229 69 55 chrY 3457522 3458178 -21254901 - L1ME2 LINE L1 -1 6163 5499 1492 207 58 29 chrY 3458183 3458526 -21254553 - MLT1A1 LTR MaLR -12 353 1 347 296 84 7 chrY 3458606 3458748 -21254331 - L1MEc LINE L1 -5716 680 528 311 250 39 62 chrY 3458759 3458887 -21254192 - L1MEc LINE L1 -6269 127 3 5065 246 17 6 chrY 3458899 3460095 -21252984 + L1PBa LINE L1 6 1214 -5649 1987 116 18 7 chrY 3460201 3460485 -21252594 - AluSq SINE Alu -26 287 1 349 111 0 0 chrY 3461272 3461326 -21251753 - AluSc SINE Alu -2 297 244 808 113 57 38 chrY 3461427 3461586 -21251493 + AluJb SINE Alu 32 193 -119 423 76 167 15 chrY 3461586 3461652 -21251427 + AluSg/x SINE Alu 76 151 -159 1959 97 0 30 chrY 3461678 3461945 -21251134 - AluSc SINE Alu -12 297 39 184 245 19 0 chrY 3462162 3462215 -21250864 - L2 LINE L2 -70 3243 3190 2158 114 3 0 chrY 3463324 3463613 -21249466 - AluSx SINE Alu -17 295 6 2182 125 3 0 chrY 3463624 3463927 -21249152 - AluSx SINE Alu -8 304 1 2222 106 3 3 chrY 3463938 3464241 -21248838 - AluSx SINE Alu -7 305 3 610 62 0 0 chrY 3464265 3464345 -21248734 - Alu SINE Alu -12 299 220 2474 148 5 2 chrY 3464445 3464858 -21248221 + L1PBa LINE L1 1230 1643 -5220 * 13214 207 30 15 chrY 3464829 3468452 -21244627 + L1PB2 LINE L1 11 3818 -2390 4114 75 2 0 chrY 3468452 3468985 -21244094 + L1PA7 LINE L1 5618 6151 -3 13214 207 30 15 chrY 3468985 3471414 -21241665 + L1PB2 LINE L1 3818 6207 -1 1679 278 42 4 chrY 3471419 3472109 -21240970 - L1M4 LINE L1 -3113 3033 2318 467 273 54 88 chrY 3472428 3472890 -21240189 + MLT1H LTR MaLR 1 548 -1 258 140 0 0 chrY 3473046 3473096 -21239983 + L1MA9 LINE L1 6212 6261 -51 977 153 18 0 chrY 3474681 3474851 -21238228 + L1P4 LINE L1 5429 5601 -562 1968 143 32 37 chrY 3475160 3475537 -21237542 + THE1C LTR MaLR 1 375 0 1868 162 12 137 chrY 3475543 3476032 -21237047 + MSTC LTR MaLR 1 428 0 357 230 98 102 chrY 3476478 3476743 -21236336 + L1ME2 LINE L1 658 921 -5198 306 212 68 53 chrY 3476804 3476936 -21236143 + L1MEc LINE L1 19 152 -6271 * 778 273 42 26 chrY 3476916 3477294 -21235785 + L1ME2 LINE L1 4436 4819 -1310 1263 142 71 0 chrY 3477294 3477547 -21235532 - L1MC2 LINE L1 -1 6343 6073 2077 209 41 111 chrY 3477554 3477754 -21235325 - MER74A LTR ERVL 0 622 410 2230 108 0 3 chrY 3477754 3478050 -21235029 + AluY SINE Alu 3 297 -14 2077 209 41 111 chrY 3478050 3478463 -21234616 - MER74A LTR ERVL -212 410 26 557 220 129 21 chrY 3478463 3478649 -21234430 - L1MC2 LINE L1 -269 6075 5870 2150 110 0 3 chrY 3478668 3478958 -21234121 + AluY SINE Alu 1 289 -22 773 288 50 11 chrY 3478958 3479337 -21233742 + L1ME2 LINE L1 4830 5223 -906 832 279 46 53 chrY 3479338 3479944 -21233135 + MLT1E3 LTR MaLR 1 624 0 348 245 102 7 chrY 3479944 3480091 -21232988 + L1ME2 LINE L1 5220 5380 -749 1983 219 28 34 chrY 3480094 3480597 -21232482 - MLT1D LTR MaLR -5 500 1 2046 267 44 21 chrY 3480597 3481343 -21231736 + L1ME2 LINE L1 5374 6136 -11 400 258 105 53 chrY 3481351 3481541 -21231538 + L1MEc LINE L1 2345 2544 -4578 494 217 101 14 chrY 3481665 3481803 -21231276 - MLT1E LTR MaLR -428 165 16 623 302 13 38 chrY 3481820 3482055 -21231024 - MLT1E-int LTR MaLR -2 1369 1141 1903 216 76 24 chrY 3482073 3482495 -21230584 + MLT2B1 LTR ERVL 1 444 -76 533 264 22 51 chrY 3482832 3483010 -21230069 - MLT1E-int LTR MaLR -507 864 692 3237 107 9 34 chrY 3483149 3483673 -21229406 - MER9 LTR ERVK 0 511 1 897 265 43 7 chrY 3483742 3484044 -21229035 - MLT1E-int LTR MaLR -768 603 291 227 269 84 25 chrY 3484208 3484327 -21228752 - MLT2F LTR ERVL 0 663 538 299 261 0 0 chrY 3484506 3484571 -21228508 - MLT1E1 LTR MaLR -412 242 178 258 263 53 0 chrY 3484618 3484694 -21228385 - MLT1E1 LTR MaLR -507 117 38 * 372 341 0 7 chrY 3484692 3484827 -21228252 - MLT2F LTR ERVL -524 139 6 609 287 93 8 chrY 3485075 3485312 -21227767 + L1ME2 LINE L1 5899 6155 -9 626 267 22 30 chrY 3485358 3485628 -21227451 + L1MEd LINE L1 975 1242 -4877 180 240 50 140 chrY 3485630 3485730 -21227349 + L2 LINE L2 3221 3311 -2 457 343 43 30 chrY 3486389 3486645 -21226434 + L1ME2 LINE L1 5386 5637 -527 765 164 0 0 chrY 3486645 3486779 -21226300 + L1PB1 LINE L1 6016 6149 -2 457 343 43 30 chrY 3486779 3487029 -21226050 + L1ME2 LINE L1 5637 5899 -265 345 331 43 61 chrY 3487072 3487447 -21225632 + L1M3d LINE L1 413 780 -5523 3908 221 99 56 chrY 3487710 3489497 -21223582 + L1M3d LINE L1 777 2544 -3838 1342 207 6 48 chrY 3489501 3489815 -21223264 + AluJo SINE Alu 12 312 0 875 256 77 3 chrY 3489840 3490164 -21222915 + L1M3d LINE L1 2552 2899 -3483 5980 106 1 2 chrY 3490170 3490994 -21222085 + L1PA13 LINE L1 15 837 -5624 5466 128 20 1 chrY 3490994 3491587 -21221492 + L1PA13 LINE L1 4899 5479 -999 207 0 0 0 chrY 3491587 3491610 -21221469 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5466 128 20 1 chrY 3491610 3492566 -21220513 + L1PA13 LINE L1 5479 6467 -11 1093 237 13 43 chrY 3492806 3493106 -21219973 - AluJo SINE Alu -11 291 1 209 345 23 100 chrY 3493263 3493434 -21219645 - L2 LINE L2 -408 2906 2754 2216 120 3 3 chrY 3493434 3493743 -21219336 - AluSx SINE Alu -3 309 1 209 345 23 100 chrY 3493743 3493791 -21219288 - L2 LINE L2 -560 2754 2704 351 64 0 0 chrY 3493801 3493848 -21219231 + MADE1 DNA Mariner 33 79 -1 329 415 0 6 chrY 3493849 3494008 -21219071 - L2 LINE L2 -607 2707 2550 22 0 0 0 chrY 3494121 3494143 -21218936 + AT_rich Low_complexity Low_complexity 1 22 0 345 265 60 20 chrY 3494515 3494666 -21218413 + L1M3d LINE L1 2640 2796 -3586 818 308 101 56 chrY 3494730 3495428 -21217651 + L1M3d LINE L1 2903 3677 -2705 2609 20 0 7 chrY 3495428 3495752 -21217327 + AluYa5 SINE Alu 1 322 0 818 308 101 56 chrY 3495752 3496054 -21217025 + L1M3d LINE L1 3677 3964 -2418 1005 172 0 0 chrY 3496054 3496211 -21216868 + FRAM SINE Alu 1 152 -24 29 0 0 0 chrY 3496212 3496241 -21216838 + AT_rich Low_complexity Low_complexity 1 29 0 371 279 99 23 chrY 3496350 3496522 -21216557 + MLT1J LTR MaLR 320 504 -7 299 294 35 0 chrY 3496557 3496642 -21216437 - HERV16 LTR ERVL -4907 89 2 579 288 138 68 chrY 3496656 3497056 -21216023 - LTR16A LTR ERVL -14 443 16 245 200 57 0 chrY 3497180 3497250 -21215829 + L1MC/D LINE L1 5368 5441 -2367 2280 149 78 7 chrY 3497315 3497737 -21215342 + LTR47A LTR ERVL 1 452 0 2015 194 45 29 chrY 3497836 3498455 -21214624 + L1M3 LINE L1 5065 5697 -486 293 279 15 22 chrY 3499065 3499201 -21213878 - L1MEd LINE L1 -5061 1058 924 1983 132 3 3 chrY 3499207 3499495 -21213584 + AluSx SINE Alu 1 288 -24 488 244 9 0 chrY 3499547 3499662 -21213417 - L1ME1 LINE L1 -20 6146 6031 14761 236 21 19 chrY 3499675 3504383 -21208696 - L1PA13 LINE L1 -847 5950 1220 2954 296 43 19 chrY 3504398 3505219 -21207860 - L1PA13 LINE L1 -5947 840 1 3276 234 25 16 chrY 3505254 3506168 -21206911 - L1 LINE L1 -1595 4551 3630 768 228 13 0 chrY 3506177 3506335 -21206744 + MLT1A1 LTR MaLR 1 160 -205 12378 133 7 11 chrY 3506335 3508379 -21204700 + L1P LINE L1 3236 5271 -875 7641 112 6 31 chrY 3508402 3509643 -21203436 - L1P LINE L1 -2733 3413 2205 1663 76 0 0 chrY 3509643 3509853 -21203226 - AluY SINE Alu -8 303 94 5478 220 3 11 chrY 3509862 3511092 -21201987 + L1P LINE L1 2674 3894 -2252 1619 186 0 24 chrY 3511096 3511391 -21201688 + AluJb SINE Alu 1 288 -24 387 158 0 10 chrY 3511419 3511509 -21201570 + L1M4 LINE L1 3869 3955 -2191 23 54 0 0 chrY 3512576 3512613 -21200466 + AT_rich Low_complexity Low_complexity 1 37 0 21 36 0 0 chrY 3513013 3513041 -21200038 + AT_rich Low_complexity Low_complexity 1 28 0 201 167 56 0 chrY 3513268 3513322 -21199757 + (TA)n Simple_repeat Simple_repeat 1 57 0 629 291 35 20 chrY 3514507 3514710 -21198369 + MLT1I LTR MaLR 1 206 -203 1174 333 10 15 chrY 3514997 3515400 -21197679 + MLT1I LTR MaLR 1 401 -8 1213 245 33 18 chrY 3515973 3516308 -21196771 + MER58B DNA MER1_type 2 341 0 3384 210 59 2 chrY 3516898 3517683 -21195396 - L1 LINE L1 -1154 6411 5583 2037 184 124 3 chrY 3517668 3518434 -21194645 + L1MB3 LINE L1 4952 5789 -523 * 715 171 11 17 chrY 3518448 3518629 -21194450 + (TA)n Simple_repeat Simple_repeat 1 180 0 1129 190 47 18 chrY 3518642 3518976 -21194103 + L1MB3 LINE L1 5776 6174 -9 22 0 0 0 chrY 3518981 3519003 -21194076 + AT_rich Low_complexity Low_complexity 1 22 0 3575 167 29 20 chrY 3519003 3519771 -21193308 + L1MA9 LINE L1 5413 6290 -22 376 344 46 0 chrY 3520174 3520323 -21192756 - MIR SINE MIR -6 256 101 263 316 84 26 chrY 3520323 3520478 -21192601 + MIR SINE MIR 1 164 -98 221 273 36 0 chrY 3521167 3521222 -21191857 + L2 LINE L2 3249 3305 -8 5356 163 18 22 chrY 3521313 3522738 -21190341 - L1 LINE L1 -3458 4107 2687 9310 106 3 1 chrY 3522779 3524127 -21188952 + L1P LINE L1 3646 4996 -1150 10135 231 84 25 chrY 3524129 3526389 -21186690 - L1 LINE L1 -4866 2699 559 7485 34 0 3 chrY 3526389 3527472 -21185607 + L1PA5 LINE L1 5074 6154 0 10135 231 84 25 chrY 3527472 3528049 -21185030 - L1 LINE L1 -7006 559 17 320 415 50 0 chrY 3528156 3528315 -21184764 + L2 LINE L2 3104 3270 -2 23 68 0 0 chrY 3528464 3528508 -21184571 + AT_rich Low_complexity Low_complexity 1 44 0 435 128 3 12 chrY 3528786 3528871 -21184208 - L1PA4 LINE L1 -254 5901 5820 2596 51 0 0 chrY 3529077 3529388 -21183691 + AluY SINE Alu 1 311 0 294 29 0 0 chrY 3530325 3530360 -21182719 + (CA)n Simple_repeat Simple_repeat 1 35 0 464 362 40 25 chrY 3530419 3530658 -21182421 + MIR SINE MIR 10 250 -12 258 250 0 0 chrY 3530664 3530720 -21182359 + (ATG)n Simple_repeat Simple_repeat 2 57 0 192 77 0 0 chrY 3531044 3531070 -21182009 + (CA)n Simple_repeat Simple_repeat 1 26 0 1424 192 59 50 chrY 3531072 3531411 -21181668 - MER2 DNA MER2_type -2 342 1 349 276 7 22 chrY 3532177 3532299 -21180780 + MLT1H LTR MaLR 1 162 -387 4457 185 41 4 chrY 3532400 3533404 -21179675 + L1MB8 LINE L1 5124 6178 0 336 283 93 73 chrY 3533464 3533711 -21179368 + L1ME LINE L1 4535 4786 -1360 22 0 0 0 chrY 3534180 3534202 -21178877 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chrY 3534721 3534751 -21178328 + AT_rich Low_complexity Low_complexity 1 30 0 397 283 0 0 chrY 3534906 3535005 -21178074 + L1ME LINE L1 5638 5736 -434 37 62 0 0 chrY 3535138 3535203 -21177876 + AT_rich Low_complexity Low_complexity 1 65 0 188 260 77 10 chrY 3535212 3535316 -21177763 - L2 LINE L2 -150 3163 3053 1091 213 30 22 chrY 3535493 3535761 -21177318 + LTR43 LTR ERV1 177 446 -156 1033 278 108 32 chrY 3535854 3536315 -21176764 - L2 LINE L2 -417 2897 2402 1596 253 26 30 chrY 3536454 3536961 -21176118 - MLT1D LTR MaLR 0 505 1 319 296 175 25 chrY 3537212 3537306 -21175773 - L1ME4a LINE L1 -247 5874 5795 2123 125 47 33 chrY 3537306 3537665 -21175414 - THE1B LTR MaLR 0 364 1 319 296 175 25 chrY 3537665 3537810 -21175269 - L1ME4a LINE L1 -326 5795 5599 315 283 71 0 chrY 3538211 3538310 -21174769 - L1ME4a LINE L1 -2379 5429 5324 800 269 40 31 chrY 3538933 3539160 -21173919 + MIR SINE MIR 1 229 -33 5898 146 13 15 chrY 3539183 3540214 -21172865 + L1MC1 LINE L1 5298 6327 -6 941 130 10 47 chrY 3540206 3540398 -21172681 - L1PA15-16 LINE L1 -4786 2063 1879 * 4947 174 41 22 chrY 3540400 3541451 -21171628 + L1PA16 LINE L1 4438 5528 -638 1944 131 0 17 chrY 3541451 3541742 -21171337 + AluSx SINE Alu 10 295 -17 4947 174 41 22 chrY 3541742 3542388 -21170691 + L1PA16 LINE L1 5528 6160 -6 214 261 0 0 chrY 3544404 3544450 -21168629 - L2 LINE L2 -12 3301 3256 2388 194 58 79 chrY 3544619 3545324 -21167755 + LTR8 LTR ERV1 2 691 0 2223 151 5 13 chrY 3545327 3545705 -21167374 - THE1C LTR MaLR 0 375 1 329 236 57 89 chrY 3545780 3545937 -21167142 + MLT1K LTR MaLR 316 467 -121 23 33 0 0 chrY 3545966 3545996 -21167083 + AT_rich Low_complexity Low_complexity 1 30 0 273 315 79 39 chrY 3546459 3546586 -21166493 + L2 LINE L2 3141 3272 0 238 316 35 57 chrY 3546938 3547166 -21165913 - L1ME LINE L1 -203 5918 5696 319 348 92 27 chrY 3547259 3547443 -21165636 - L1ME LINE L1 -2239 5569 5374 892 224 73 29 chrY 3547642 3547887 -21165192 + LTR16A1 LTR ERVL 198 453 -4 217 384 20 0 chrY 3548197 3548296 -21164783 + L2 LINE L2 2376 2476 -838 1517 174 169 21 chrY 3548303 3548676 -21164403 - MSTA LTR MaLR 0 428 1 8846 201 15 1 chrY 3548676 3550287 -21162792 - MSTA-int LTR MaLR 0 1651 18 1955 148 137 5 chrY 3550320 3550693 -21162386 - MSTA LTR MaLR -6 422 1 4275 128 35 4 chrY 3550717 3551438 -21161641 - L1MA2 LINE L1 -296 7427 6685 11976 201 21 39 chrY 3551473 3554449 -21158630 - L1MA2 LINE L1 -874 6691 3769 811 162 0 15 chrY 3554460 3554596 -21158483 - AluSq/x SINE Alu -179 134 1 13163 180 65 48 chrY 3554597 3555386 -21157693 - L1MA2 LINE L1 -3783 3782 3008 2481 75 10 0 chrY 3555386 3555694 -21157385 - AluY SINE Alu 0 311 1 13163 180 65 48 chrY 3555694 3556420 -21156659 - L1MA2 LINE L1 -4557 3008 2296 2277 97 3 0 chrY 3556420 3556719 -21156360 + AluSp SINE Alu 2 301 -12 13163 180 65 48 chrY 3556719 3558247 -21154832 - L1MA2 LINE L1 -5269 2296 688 6311 205 47 60 chrY 3558238 3559605 -21153474 + L1MC3 LINE L1 5195 5039 -1107 * 225 87 0 0 chrY 3559605 3559651 -21153428 + LTR66 LTR ERVL 394 439 -171 6311 205 47 60 chrY 3559651 3560013 -21153066 + L1MC3 LINE L1 5038 5403 -743 251 136 17 51 chrY 3560015 3560074 -21153005 + MLT1F1 LTR MaLR 46 102 -465 1763 183 109 10 chrY 3560080 3560485 -21152594 + L1MC3 LINE L1 7188 7632 -153 25 31 0 0 chrY 3560534 3560566 -21152513 + AT_rich Low_complexity Low_complexity 1 32 0 * 823 143 7 0 chrY 3560536 3560676 -21152403 + L1MA2 LINE L1 6111 6251 -53 315 0 0 0 chrY 3560676 3560711 -21152368 + (TC)n Simple_repeat Simple_repeat 2 36 0 * 341 53 0 53 chrY 3560710 3560767 -21152312 + (TA)n Simple_repeat Simple_repeat 1 54 0 24 0 0 0 chrY 3560783 3560807 -21152272 + AT_rich Low_complexity Low_complexity 1 24 0 1413 215 22 0 chrY 3560826 3561100 -21151979 + AluJo SINE Alu 3 282 -30 491 0 17 0 chrY 3561100 3561159 -21151920 + (CA)n Simple_repeat Simple_repeat 1 60 0 655 273 57 54 chrY 3562219 3562552 -21150527 + LTR52 LTR ERVL 3 336 -85 349 263 75 25 chrY 3562610 3562770 -21150309 + MER112 DNA MER1_type 68 235 -25 237 309 53 21 chrY 3562913 3563007 -21150072 - MIR3 SINE MIR -102 106 10 1236 277 103 14 chrY 3565689 3566126 -21146953 + MLT1H LTR MaLR 74 549 0 559 285 62 26 chrY 3566218 3566285 -21146794 + MIR SINE MIR 49 112 -150 1247 115 150 0 chrY 3566285 3566485 -21146594 + MER30 DNA MER1_type 1 230 0 559 285 62 26 chrY 3566485 3566610 -21146469 + MIR SINE MIR 112 248 -14 29 84 0 0 chrY 3567151 3567222 -21145857 + AT_rich Low_complexity Low_complexity 1 71 0 2618 7 0 0 chrY 3567463 3567780 -21145299 + AluYb8 SINE Alu 1 317 0 1029 314 73 15 chrY 3567918 3568329 -21144750 - LTR16A LTR ERVL -13 437 3 579 378 91 9 chrY 3568381 3568834 -21144245 - L2 LINE L2 -37 3276 2790 2524 68 0 0 chrY 3568930 3569241 -21143838 - AluY SINE Alu 0 311 1 2419 236 36 11 chrY 3569349 3570015 -21143064 + L1MD1 LINE L1 3593 4275 -1871 282 317 78 14 chrY 3570020 3570162 -21142917 + L1MD1 LINE L1 4201 4351 -1795 2313 215 24 15 chrY 3570175 3570769 -21142310 + L1MD1 LINE L1 5167 5753 -606 4300 94 10 0 chrY 3570786 3571402 -21141677 - L1PA13 LINE L1 0 6163 5542 3680 73 6 4 chrY 3571403 3571894 -21141185 - L1PA11 LINE L1 -55 6119 5628 2035 181 25 85 chrY 3571926 3572242 -21140837 + L1MD1 LINE L1 5745 6079 -163 2429 75 10 0 chrY 3572242 3572550 -21140529 + AluY SINE Alu 1 311 0 2350 73 0 19 chrY 3572553 3572866 -21140213 + AluY SINE Alu 1 307 -4 2035 181 25 85 chrY 3572866 3573074 -21140005 + L1MD1 LINE L1 6081 6241 -1 220 405 12 0 chrY 3574204 3574288 -21138791 - MIR SINE MIR -161 101 17 300 278 42 52 chrY 3574354 3574545 -21138534 + L1MC4a LINE L1 5753 5941 -1867 22 0 0 0 chrY 3575171 3575193 -21137886 + AT_rich Low_complexity Low_complexity 1 22 0 7885 230 45 31 chrY 3576280 3577074 -21136005 - L1MB3 LINE L1 -2 6181 5400 2239 75 3 0 chrY 3577074 3577367 -21135712 - AluY SINE Alu -17 294 1 7885 230 45 31 chrY 3577367 3578673 -21134406 - L1MB3 LINE L1 -783 5400 4114 1763 130 27 3 chrY 3578673 3578972 -21134107 - L1PA13 LINE L1 -1 6162 5857 7885 230 45 31 chrY 3578972 3580556 -21132523 - L1MB3 LINE L1 -2069 4114 2442 225 0 0 0 chrY 3580557 3580582 -21132497 + (CA)n Simple_repeat Simple_repeat 2 26 0 1361 187 65 0 chrY 3580589 3580904 -21132175 - L1PB4 LINE L1 -4 6152 5478 * 1621 238 15 11 chrY 3580903 3581370 -21131709 + L1MA7 LINE L1 4313 4781 -1365 3479 159 63 7 chrY 3581373 3582066 -21131013 + L1MA7 LINE L1 5557 6288 -3 234 244 23 12 chrY 3582162 3582248 -21130831 + (TA)n Simple_repeat Simple_repeat 2 88 0 301 390 13 0 chrY 3582721 3582875 -21130204 - L1ME2 LINE L1 -176 5988 5833 448 292 39 49 chrY 3583819 3584103 -21128976 - L1ME2 LINE L1 -2229 5579 5299 2314 90 0 6 chrY 3584164 3584475 -21128604 - AluSc SINE Alu 0 309 1 2197 209 19 86 chrY 3584577 3585169 -21127910 + MLT2B3 LTR ERVL 1 552 -2 712 289 82 16 chrY 3585253 3585568 -21127511 + L1MC5 LINE L1 5602 5937 -1871 360 0 0 0 chrY 3585577 3585617 -21127462 + (TA)n Simple_repeat Simple_repeat 2 41 0 7934 96 7 1 chrY 3585659 3587589 -21125490 + L1PA7 LINE L1 4204 6150 -4 22 0 0 0 chrY 3587589 3587611 -21125468 + AT_rich Low_complexity Low_complexity 1 22 0 1974 231 97 101 chrY 3588029 3589325 -21123754 + L1MC5 LINE L1 6635 7924 -37 32 57 0 0 chrY 3589380 3589433 -21123646 + AT_rich Low_complexity Low_complexity 1 53 0 3089 121 12 14 chrY 3589460 3589971 -21123108 + L1MA2 LINE L1 5795 6304 0 250 387 0 0 chrY 3590039 3590163 -21122916 + L1MEc LINE L1 296 419 -5977 294 310 41 46 chrY 3590289 3590486 -21122593 + L1MEc LINE L1 492 687 -5709 495 113 0 0 chrY 3590487 3590588 -21122491 + AluSg/x SINE Alu 213 313 0 535 278 107 56 chrY 3590589 3590967 -21122112 + L1MEc LINE L1 680 1086 -5310 180 0 0 0 chrY 3590967 3590987 -21122092 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 535 278 107 56 chrY 3590987 3591058 -21122021 + L1MEc LINE L1 1086 1152 -5244 356 207 0 0 chrY 3591081 3591163 -21121916 + L1MEc LINE L1 2907 2988 -3227 227 31 31 0 chrY 3591536 3591568 -21121511 + (TTTTG)n Simple_repeat Simple_repeat 4 36 0 1957 114 0 4 chrY 3591833 3592105 -21120974 + AluSc SINE Alu 35 305 -4 307 358 43 21 chrY 3592317 3592504 -21120575 - MIR SINE MIR -52 210 20 27 29 0 0 chrY 3592811 3592845 -21120234 + AT_rich Low_complexity Low_complexity 1 34 0 559 308 107 8 chrY 3593017 3593251 -21119828 - MIR SINE MIR -4 258 2 1878 256 99 23 chrY 3593545 3594100 -21118979 - MLT2F LTR ERVL -66 597 1 1869 128 25 4 chrY 3596407 3596688 -21116391 - AluSg SINE Alu -15 295 9 231 218 126 58 chrY 3597145 3597216 -21115863 - MLT1J LTR MaLR -44 467 388 5235 95 70 13 chrY 3597216 3597997 -21115082 - LTR12 LTR ERV1 0 826 1 231 218 126 58 chrY 3597997 3598012 -21115067 - MLT1J LTR MaLR -123 388 375 2062 151 125 8 chrY 3598361 3598744 -21114335 + MSTA LTR MaLR 1 428 0 374 262 89 46 chrY 3598992 3599447 -21113632 + L1ME LINE L1 5295 5774 -396 54 49 0 0 chrY 3599447 3599529 -21113550 + AT_rich Low_complexity Low_complexity 1 82 0 1468 272 29 29 chrY 3599588 3600143 -21112936 - L1M4 LINE L1 -1573 4809 4255 207 0 0 0 chrY 3600151 3600174 -21112905 + (TC)n Simple_repeat Simple_repeat 2 24 0 183 129 0 0 chrY 3600218 3600249 -21112830 + (TA)n Simple_repeat Simple_repeat 2 32 0 210 37 0 0 chrY 3600250 3600277 -21112802 + (TG)n Simple_repeat Simple_repeat 2 28 0 425 223 79 46 chrY 3600305 3600534 -21112545 - L1M4 LINE L1 -2162 4220 3989 186 43 0 0 chrY 3600534 3600557 -21112522 + (TA)n Simple_repeat Simple_repeat 2 24 0 959 277 64 4 chrY 3600611 3601098 -21111981 - L1M4 LINE L1 -2685 3697 3182 255 289 0 0 chrY 3601095 3601178 -21111901 + L1M4 LINE L1 2134 2216 -3930 * 4681 167 13 16 chrY 3601194 3602488 -21110591 + L1PA16 LINE L1 4876 6165 -1 740 205 12 6 chrY 3602522 3602683 -21110396 + AluJb SINE Alu 1 162 -150 303 250 22 0 chrY 3602857 3602949 -21110130 - L1M4 LINE L1 -4543 1841 1748 2133 158 14 19 chrY 3602954 3603320 -21109759 + THE1B LTR MaLR 1 364 0 10124 100 13 0 chrY 3603320 3604822 -21108257 + THE1B-int LTR MaLR 1 1580 0 2055 168 19 19 chrY 3604822 3605186 -21107893 + THE1B LTR MaLR 1 364 0 789 255 105 22 chrY 3605188 3605502 -21107577 - L1M4 LINE L1 -4639 1745 1406 * 2410 200 29 53 chrY 3605500 3606028 -21107051 + L1MB7 LINE L1 5568 6080 -104 571 76 13 0 chrY 3606028 3606107 -21106972 - MADE1 DNA Mariner 0 80 1 2410 200 29 53 chrY 3606107 3606202 -21106877 + L1MB7 LINE L1 6080 6176 -8 1800 182 5 32 chrY 3607117 3607490 -21105589 + MLT1A1 LTR MaLR 3 365 0 202 279 59 0 chrY 3608016 3608084 -21104995 + L2 LINE L2 2288 2359 -955 11090 170 13 7 chrY 3608116 3610067 -21103012 + Tigger1 DNA MER2_type 1 1963 -455 216 0 0 0 chrY 3610067 3610091 -21102988 + (T)n Simple_repeat Simple_repeat 1 24 0 7160 204 14 21 chrY 3610104 3610761 -21102318 - L1PA13 LINE L1 -762 6035 5375 2012 204 117 65 chrY 3610761 3611546 -21101533 + LTR1B LTR ERV1 1 826 0 7160 204 14 21 chrY 3611546 3612165 -21100914 - L1PA13 LINE L1 -1422 5375 4753 2034 178 51 10 chrY 3612165 3612576 -21100503 + MSTA LTR MaLR 1 428 0 7160 204 14 21 chrY 3612576 3613229 -21099850 - L1PA13 LINE L1 -2044 4753 4114 1911 144 64 25 chrY 3613229 3613590 -21099489 - THE1C LTR MaLR 0 375 1 9227 134 39 42 chrY 3613595 3615173 -21097906 - THE1C-int LTR MaLR -6 1574 1 1916 143 88 20 chrY 3615173 3615524 -21097555 - THE1C LTR MaLR 0 375 1 1493 231 26 3 chrY 3615524 3615910 -21097169 - L1PA13 LINE L1 -2679 4118 3724 1966 201 61 25 chrY 3615910 3616354 -21096725 - LTR2B LTR ERV1 0 490 31 6444 229 31 5 chrY 3616372 3618846 -21094233 - L1PA13 LINE L1 -3070 3727 1174 3501 198 3 0 chrY 3618851 3619426 -21093653 - L1PA13 LINE L1 -6209 578 2 2113 153 55 3 chrY 3619437 3619822 -21093257 + Tigger1 DNA MER2_type 1951 2355 -63 469 339 97 63 chrY 3619861 3620078 -21093001 + L2 LINE L2 2394 2602 -711 2508 71 0 0 chrY 3620078 3620389 -21092690 - AluY SINE Alu 0 311 1 469 339 97 63 chrY 3620389 3621056 -21092023 + L2 LINE L2 2602 3313 0 778 253 6 0 chrY 3621242 3621424 -21091655 + MER3 DNA MER1_type 1 183 -26 2559 173 47 49 chrY 3622093 3622705 -21090374 + LTR36 LTR ERV1 1 611 0 180 0 0 0 chrY 3622831 3622851 -21090228 + (A)n Simple_repeat Simple_repeat 1 20 0 223 298 83 50 chrY 3623309 3623462 -21089617 - MIR SINE MIR -66 142 19 780 323 23 19 chrY 3625297 3625557 -21087522 + MIR SINE MIR 2 262 0 4552 279 102 33 chrY 3625982 3630005 -21083074 + L1PA12 LINE L1 9 4404 -3180 2632 224 32 18 chrY 3630001 3630723 -21082356 + L1 LINE L1 5484 6215 -1369 * 2645 88 98 5 chrY 3630723 3631133 -21081946 + LTR7 LTR ERV1 1 448 -2 19696 104 20 12 chrY 3631135 3634099 -21078980 + HERVH LTR ERV1 1 2987 -4726 808 157 27 0 chrY 3634093 3634240 -21078839 + HERVH LTR ERV1 3140 3290 -4423 * 3400 103 4 4 chrY 3634239 3634733 -21078346 + HERVH LTR ERV1 3500 3993 -3720 4316 145 0 3 chrY 3634735 3635399 -21077680 + HERVH LTR ERV1 4488 5149 -2564 1340 103 25 5 chrY 3635414 3635618 -21077461 + HERVH LTR ERV1 5612 5819 -1894 * 2312 106 53 13 chrY 3635616 3635993 -21077086 + HERVH LTR ERV1 7322 7713 0 2623 86 100 5 chrY 3635993 3636402 -21076677 + LTR7 LTR ERV1 1 448 -2 1980 219 60 14 chrY 3636405 3637081 -21075998 + L1PA16 LINE L1 4774 5475 -691 25426 35 1 0 chrY 3637108 3641009 -21072070 - L1PA3 LINE L1 0 6155 2268 10223 61 11 8 chrY 3641010 3642361 -21070718 + L1P LINE L1 676 2030 -4116 3435 157 64 24 chrY 3642363 3643038 -21070041 + L1PA16 LINE L1 5464 6165 -1 24 0 0 0 chrY 3643055 3643079 -21070000 + AT_rich Low_complexity Low_complexity 1 24 0 264 330 28 9 chrY 3643214 3643323 -21069756 - MER20B DNA MER1_type -613 170 60 457 281 47 18 chrY 3643330 3643501 -21069578 + MER69A DNA AcHobo 2 177 0 255 31 0 0 chrY 3644147 3644179 -21068900 + (T)n Simple_repeat Simple_repeat 1 32 0 1626 146 168 76 chrY 3644948 3645318 -21067761 - MER4A LTR ERV1 0 664 261 303 130 0 0 chrY 3645325 3645371 -21067708 - MER4A LTR ERV1 -573 91 46 532 206 57 86 chrY 3645444 3645619 -21067460 - MER58C DNA MER1_type -2 213 44 268 348 0 0 chrY 3645992 3646084 -21066995 - LTR16B LTR ERVL -140 324 233 420 355 14 0 chrY 3646122 3646263 -21066816 - LTR16B LTR ERVL -318 146 4 26 30 0 0 chrY 3646390 3646423 -21066656 + AT_rich Low_complexity Low_complexity 1 33 0 1689 93 0 16 chrY 3646423 3646670 -21066409 - L1MA1 LINE L1 0 6302 6060 2989 191 67 19 chrY 3646685 3646726 -21066353 - L1 LINE L1 -2392 4456 4418 2097 112 20 0 chrY 3646726 3647021 -21066058 - AluSg SINE Alu -9 301 1 2989 191 67 19 chrY 3647021 3647805 -21065274 - L1 LINE L1 -2430 4418 3592 1143 184 29 0 chrY 3647807 3648004 -21065075 - MER41C LTR ERV1 0 554 349 378 61 0 0 chrY 3648004 3648053 -21065026 + (TG)n Simple_repeat Simple_repeat 2 50 0 240 301 0 0 chrY 3648066 3648149 -21064930 - L1MC4 LINE L1 -1346 6696 6614 251 250 0 22 chrY 3648149 3648241 -21064838 - L1MC4 LINE L1 -1339 6703 6614 189 147 0 0 chrY 3648241 3648275 -21064804 + (TATATG)n Simple_repeat Simple_repeat 2 35 0 316 269 0 43 chrY 3648278 3648371 -21064708 + L1MC4 LINE L1 6615 6703 -1339 357 289 0 0 chrY 3648373 3648463 -21064616 - L1MC4 LINE L1 -1339 6703 6614 345 300 0 0 chrY 3648387 3648477 -21064602 + L1MC4 LINE L1 6614 6703 -1339 * 1960 130 47 3 chrY 3648497 3648797 -21064282 - MER41C LTR ERV1 -241 313 1 2919 259 25 9 chrY 3648797 3650290 -21062789 - L1 LINE L1 -3255 3593 2077 1234 223 68 7 chrY 3650864 3651142 -21061937 - AluJo SINE Alu -7 295 1 2429 253 53 14 chrY 3651375 3652430 -21060649 - L1M4c LINE L1 -2299 4658 3563 1084 289 45 40 chrY 3652545 3653291 -21059788 - L1M4c LINE L1 -4391 2566 1759 1192 42 0 0 chrY 3653302 3653446 -21059633 - L1PA3 LINE L1 -3 6152 6009 593 29 0 0 chrY 3653446 3653516 -21059563 + L1P1 LINE L1 5701 5770 -385 316 181 183 17 chrY 3653545 3653700 -21059379 - L1M4c LINE L1 -5107 1748 1563 2512 162 24 2 chrY 3653710 3654129 -21058950 + MSTA LTR MaLR 1 428 0 5640 220 18 11 chrY 3654129 3655282 -21057797 + MSTA-int LTR MaLR 1 1161 -490 1845 153 23 3 chrY 3655282 3655583 -21057496 - MSTA LTR MaLR -119 309 3 708 152 32 0 chrY 3655585 3655710 -21057369 - MSTA-int LTR MaLR 0 1651 1523 1614 120 0 0 chrY 3655710 3655951 -21057128 + L1PA13 LINE L1 5915 6155 -8 2186 281 96 24 chrY 3655955 3656797 -21056282 - L1M4c LINE L1 -5888 971 69 363 324 60 0 chrY 3656865 3657047 -21056032 + LTR67 LTR ERVL 363 555 -2 5136 230 20 19 chrY 3657714 3658755 -21054324 - L1MC1 LINE L1 -6 6607 5568 4784 44 5 2 chrY 3658755 3659344 -21053735 - LTR10C LTR ERV1 0 591 1 5136 230 20 19 chrY 3659344 3660751 -21052328 - L1MC1 LINE L1 -1045 5568 4143 7690 204 91 40 chrY 3660760 3661552 -21051527 - L1MC1 LINE L1 -3709 2717 1967 1847 230 24 7 chrY 3661552 3661969 -21051110 - MSTB LTR MaLR 0 426 3 7690 204 91 40 chrY 3661969 3663752 -21049327 - L1MC1 LINE L1 -4459 1967 17 21 36 0 0 chrY 3664194 3664222 -21048857 + AT_rich Low_complexity Low_complexity 1 28 0 198 0 0 0 chrY 3664257 3664279 -21048800 + (A)n Simple_repeat Simple_repeat 1 22 0 2196 121 0 7 chrY 3665188 3665493 -21047586 + AluSq SINE Alu 1 303 -10 322 232 36 27 chrY 3666077 3666189 -21046890 - L2 LINE L2 -518 2796 2684 300 311 108 50 chrY 3666196 3666418 -21046661 + L1PBb LINE L1 12 246 -6603 509 257 57 54 chrY 3667199 3667438 -21045641 + L1PBb LINE L1 1471 1708 -5140 2138 107 16 26 chrY 3667438 3667746 -21045333 - AluSp SINE Alu -8 305 1 509 257 57 54 chrY 3667746 3667951 -21045128 + L1PBb LINE L1 1708 2009 -4839 8118 218 91 27 chrY 3667952 3668849 -21044230 + L1P LINE L1 757 1595 -5253 7353 33 0 0 chrY 3668849 3669731 -21043348 + L1PA4 LINE L1 5271 6152 -3 8118 218 91 27 chrY 3669731 3671178 -21041901 + L1P LINE L1 1595 3251 -3597 22 0 0 0 chrY 3671597 3671619 -21041460 + AT_rich Low_complexity Low_complexity 1 22 0 225 0 0 0 chrY 3671839 3671864 -21041215 + (TG)n Simple_repeat Simple_repeat 2 26 0 4553 245 19 7 chrY 3672041 3673648 -21039431 + L1MA2 LINE L1 1 1730 -5835 * 5482 131 1 1 chrY 3673641 3674497 -21038582 + L1PA13 LINE L1 5307 6162 -1 6878 180 39 17 chrY 3674535 3675977 -21037102 + L1MA2 LINE L1 1716 3189 -4376 429 233 193 7 chrY 3676055 3676205 -21036874 - MER2 DNA MER2_type 0 345 168 281 193 0 18 chrY 3676259 3676316 -21036763 + MLT1G1 LTR MaLR 7 62 -533 5191 31 3 0 chrY 3676328 3676942 -21036137 - L1PA4 LINE L1 0 6155 5540 13543 180 25 11 chrY 3676942 3681423 -21031656 + L1MA2 LINE L1 3177 7723 0 227 86 0 0 chrY 3681701 3681736 -21031343 + L1M2 LINE L1 5767 5801 -490 275 313 78 43 chrY 3681747 3681862 -21031217 + MIR3 SINE MIR 46 164 -44 1950 145 13 0 chrY 3682281 3682585 -21030494 + AluSq SINE Alu 1 308 -5 2117 108 28 0 chrY 3682738 3683025 -21030054 + AluSq SINE Alu 1 295 -18 716 224 29 6 chrY 3683983 3684157 -21028922 + MER5B DNA MER1_type 1 178 0 851 250 64 74 chrY 3684314 3684610 -21028469 + L2 LINE L2 3019 3311 -2 2448 127 6 3 chrY 3685243 3685606 -21027473 - THE1B LTR MaLR 0 364 1 9621 138 16 31 chrY 3685606 3687209 -21025870 - THE1B-int LTR MaLR 0 1580 1 411 168 2 13 chrY 3687209 3687297 -21025782 - MSTA LTR MaLR 0 428 288 2065 177 58 3 chrY 3687722 3688155 -21024924 + LTR49 LTR ERV1 1 491 -131 2614 170 40 57 chrY 3688157 3688580 -21024499 + LTR29 LTR ERV1 1 430 -223 1571 177 3 14 chrY 3688580 3688925 -21024154 - AluSx SINE Alu 0 344 3 2614 170 40 57 chrY 3688925 3688938 -21024141 + LTR29 LTR ERV1 430 442 -211 2146 136 3 12 chrY 3688938 3689284 -21023795 - L1PB3 LINE L1 -1 6153 5811 2614 170 40 57 chrY 3689284 3689484 -21023595 + LTR29 LTR ERV1 442 648 -5 990 172 47 23 chrY 3689491 3689798 -21023281 + LTR29-int LTR ERV1 1 351 -5980 12808 204 41 15 chrY 3689803 3692304 -21020775 - L1M LINE L1 -743 5403 2814 2521 124 3 0 chrY 3692304 3692667 -21020412 - THE1B LTR MaLR 0 364 1 12808 204 41 15 chrY 3692667 3693310 -21019769 - L1M LINE L1 -3332 2814 2189 1905 150 137 8 chrY 3693311 3693690 -21019389 + MSTA LTR MaLR 1 428 0 1602 161 20 10 chrY 3693693 3693985 -21019094 + MSTA-int LTR MaLR 4 298 -1282 1388 174 0 23 chrY 3693978 3694237 -21018842 + MSTA-int LTR MaLR 631 883 -697 * 447 208 20 10 chrY 3694238 3694339 -21018740 + MSTA-int LTR MaLR 1541 1642 -9 330 155 0 0 chrY 3694362 3694420 -21018659 + MSTA LTR MaLR 371 428 0 16585 203 53 11 chrY 3694420 3697875 -21015204 - L1M1 LINE L1 -3954 3611 12 11940 180 55 49 chrY 3697891 3698156 -21014923 + LTR49-int LTR ERV1 3259 3521 -2810 396 0 0 0 chrY 3698156 3698200 -21014879 + (TG)n Simple_repeat Simple_repeat 1 44 0 261 53 0 0 chrY 3698200 3698238 -21014841 - L1PB3 LINE L1 -34 6120 6083 11940 180 55 49 chrY 3698238 3700986 -21012093 + LTR49-int LTR ERV1 3520 6327 -4 3034 154 47 24 chrY 3700993 3701566 -21011513 + LTR49 LTR ERV1 3 588 -7 2171 181 26 12 chrY 3701570 3701985 -21011094 - MSTA LTR MaLR -7 421 1 1836 258 50 47 chrY 3702281 3703177 -21009902 + L1MC5 LINE L1 6632 7530 -431 282 288 22 58 chrY 3703270 3703409 -21009670 + L1ME3A LINE L1 5967 6100 -70 622 274 43 11 chrY 3703421 3703607 -21009472 + L1ME3A LINE L1 5979 6170 0 1790 167 123 26 chrY 3703920 3704310 -21008769 + MSTA LTR MaLR 1 428 0 1790 76 8 19 chrY 3704337 3704600 -21008479 + MSTA-int LTR MaLR 1315 1574 -6 1866 165 134 11 chrY 3704606 3704987 -21008092 + MSTA LTR MaLR 1 428 0 676 310 41 20 chrY 3706792 3707037 -21006042 + MIR SINE MIR 3 252 -10 541 277 48 12 chrY 3707676 3707842 -21005237 + MIR SINE MIR 91 262 0 532 239 75 99 chrY 3708704 3709076 -21004003 - LTR24B LTR ERV1 -7 569 207 9613 232 36 25 chrY 3709309 3712398 -21000681 - L1PA16 LINE L1 -8 6809 3755 957 92 0 0 chrY 3712398 3712528 -21000551 - L1PB1 LINE L1 -6 6145 6016 9613 232 36 25 chrY 3712528 3712764 -21000315 - L1PA16 LINE L1 -3062 3755 3523 180 0 0 0 chrY 3712764 3712784 -21000295 + (TA)n Simple_repeat Simple_repeat 2 21 0 9613 232 36 25 chrY 3712784 3713505 -20999574 - L1PA16 LINE L1 -3294 3523 2811 2008 118 4 0 chrY 3713505 3713777 -20999302 + AluSq SINE Alu 34 306 -7 9613 232 36 25 chrY 3713777 3714631 -20998448 - L1PA16 LINE L1 -4006 2811 1867 1823 219 57 7 chrY 3714631 3715037 -20998042 - MSTB LTR MaLR 0 426 1 7329 225 12 40 chrY 3715037 3716729 -20996350 - MSTB-int LTR MaLR 0 1651 7 1948 182 23 74 chrY 3716750 3716990 -20996089 - MSTB LTR MaLR -15 411 201 2653 94 37 15 chrY 3716990 3717394 -20995685 - L1MA1 LINE L1 0 6302 5890 1948 182 23 74 chrY 3717394 3717586 -20995493 - MSTB LTR MaLR -225 201 1 1104 241 49 175 chrY 3717586 3717992 -20995087 - L1PA16 LINE L1 -4935 1852 1500 335 303 18 18 chrY 3718695 3718804 -20994275 - MER110-int LTR ERV1 -783 6339 6231 22 0 0 0 chrY 3719905 3719927 -20993152 + AT_rich Low_complexity Low_complexity 1 22 0 276 329 66 48 chrY 3720291 3720519 -20992560 - MER110-int LTR ERV1 -2274 2373 2142 186 103 0 0 chrY 3720943 3720972 -20992107 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 281 336 24 24 chrY 3721089 3721297 -20991782 - MER110-int LTR ERV1 -3797 4938 4731 259 320 63 45 chrY 3721803 3722072 -20991007 - MER110-int LTR ERV1 -3640 3482 3209 419 336 41 0 chrY 3722338 3722484 -20990595 - MER110-int LTR ERV1 -4145 502 351 585 116 0 0 chrY 3722628 3722714 -20990365 + L1PA15 LINE L1 5513 5598 -568 5250 156 32 37 chrY 3722764 3723506 -20989573 + L1PA16 LINE L1 4576 5320 -846 1952 168 17 25 chrY 3723506 3723864 -20989215 + L1PA15 LINE L1 5811 6165 0 5250 156 32 37 chrY 3723864 3724713 -20988366 + L1PA16 LINE L1 5320 6166 0 23 0 0 0 chrY 3725325 3725348 -20987731 + AT_rich Low_complexity Low_complexity 1 23 0 262 111 0 0 chrY 3726080 3726116 -20986963 + L1 LINE L1 4882 4917 -1229 356 191 152 19 chrY 3726117 3726222 -20986857 - L1 LINE L1 -1265 4881 4763 792 248 124 0 chrY 3726560 3726762 -20986317 - AluJb SINE Alu -30 282 56 2190 108 0 10 chrY 3729243 3729549 -20983530 + AluY SINE Alu 1 303 -8 1189 244 3 7 chrY 3730812 3731095 -20981984 + AluJo SINE Alu 8 289 -23 1891 160 3 0 chrY 3731107 3731395 -20981684 + AluSx SINE Alu 6 294 -18 21 57 0 0 chrY 3733020 3733055 -20980024 + AT_rich Low_complexity Low_complexity 1 35 0 1511 177 54 0 chrY 3733108 3733385 -20979694 + AluSg SINE Alu 1 292 -18 396 82 0 0 chrY 3740532 3740593 -20972486 + (TG)n Simple_repeat Simple_repeat 2 62 0 235 188 0 47 chrY 3742878 3742942 -20970137 + CT-rich Low_complexity Low_complexity 1 61 0 794 257 27 54 chrY 3743252 3743548 -20969531 - AluJb SINE Alu -12 300 13 302 277 0 43 chrY 3743708 3743802 -20969277 + L1MC4 LINE L1 6614 6703 -1339 351 221 0 0 chrY 3743802 3743888 -20969191 + (TA)n Simple_repeat Simple_repeat 2 87 0 2170 260 55 57 chrY 3744042 3745762 -20967317 - L1MA8 LINE L1 -23 6268 4559 222 253 48 103 chrY 3749182 3749283 -20963796 + L2 LINE L2 2321 2413 -901 1576 207 3 7 chrY 3749283 3749588 -20963491 + AluSx SINE Alu 1 304 -8 222 253 48 103 chrY 3749588 3749632 -20963447 + L2 LINE L2 2413 2458 -856 1457 156 59 42 chrY 3749633 3749940 -20963139 + AluSx SINE Alu 1 312 0 2353 130 6 0 chrY 3750046 3750399 -20962680 - THE1A LTR MaLR 0 355 1 352 193 26 26 chrY 3751167 3751281 -20961798 + (TA)n Simple_repeat Simple_repeat 1 114 0 443 329 159 13 chrY 3751295 3751766 -20961313 - L1M4 LINE L1 -2743 3639 3100 476 195 12 0 chrY 3751842 3751924 -20961155 + AluSg/x SINE Alu 190 272 -38 288 0 0 0 chrY 3751931 3751963 -20961116 + (CAAAA)n Simple_repeat Simple_repeat 1 32 0 431 215 8 46 chrY 3753517 3753621 -20959458 + AluSg/x SINE Alu 185 285 -27 327 25 0 0 chrY 3753621 3753661 -20959418 + (CA)n Simple_repeat Simple_repeat 2 41 0 431 215 8 46 chrY 3753661 3753686 -20959393 + AluSg/x SINE Alu 285 309 -3 348 24 0 0 chrY 3753728 3753769 -20959310 + (CA)n Simple_repeat Simple_repeat 2 42 0 198 0 0 0 chrY 3757086 3757108 -20955971 + (CAGCC)n Simple_repeat Simple_repeat 1 22 0 222 117 0 50 chrY 3760981 3761041 -20952038 + (TTCC)n Simple_repeat Simple_repeat 1 57 0 210 91 0 0 chrY 3761252 3761285 -20951794 + (A)n Simple_repeat Simple_repeat 1 33 0 308 313 117 50 chrY 3761823 3762018 -20951061 - L1M4 LINE L1 -5019 1365 1142 876 238 30 34 chrY 3762018 3762316 -20950763 - AluJo SINE Alu -4 298 2 308 313 117 50 chrY 3762316 3762420 -20950659 - L1M4 LINE L1 -5242 1142 1046 306 0 0 0 chrY 3762458 3762492 -20950587 + (TG)n Simple_repeat Simple_repeat 2 35 0 2927 252 52 41 chrY 3762628 3763472 -20949607 - L1MA8 LINE L1 0 6291 5459 207 0 0 0 chrY 3763472 3763495 -20949584 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2927 252 52 41 chrY 3763495 3764370 -20948709 - L1MA8 LINE L1 -832 5459 4559 28 48 0 0 chrY 3766687 3766729 -20946350 + AT_rich Low_complexity Low_complexity 1 42 0 1724 205 0 0 chrY 3767920 3768222 -20944857 + AluSx SINE Alu 1 302 -10 1548 137 68 30 chrY 3768259 3768522 -20944557 + AluSx SINE Alu 1 273 -39 2591 119 6 0 chrY 3768664 3769017 -20944062 - THE1A LTR MaLR 0 355 1 309 266 49 49 chrY 3769506 3769649 -20943430 - L1MA8 LINE L1 -2410 3736 3594 348 212 26 0 chrY 3769789 3769902 -20943177 + (TA)n Simple_repeat Simple_repeat 1 116 0 268 312 153 11 chrY 3769913 3770390 -20942689 - L1M4 LINE L1 -2742 3404 2860 * 1678 295 43 33 chrY 3770383 3770914 -20942165 - HAL1 LINE L1 -462 2045 1502 2058 112 3 62 chrY 3770914 3771235 -20941844 - AluSp SINE Alu -11 302 1 1678 295 43 33 chrY 3771235 3771524 -20941555 - HAL1 LINE L1 -1005 1502 1217 196 250 132 26 chrY 3771803 3771879 -20941200 - L2 LINE L2 -50 3222 3139 1658 144 33 49 chrY 3771920 3772225 -20940854 + AluY SINE Alu 12 311 0 282 314 21 69 chrY 3772506 3772694 -20940385 - L2 LINE L2 -263 3009 2831 1555 182 10 27 chrY 3772695 3772992 -20940087 + AluSq SINE Alu 1 292 -21 1163 150 5 0 chrY 3772997 3773184 -20939895 + AluSp SINE Alu 123 310 -3 306 0 0 0 chrY 3773339 3773373 -20939706 + (CA)n Simple_repeat Simple_repeat 2 35 0 273 210 0 0 chrY 3773402 3773464 -20939615 + (TA)n Simple_repeat Simple_repeat 2 63 0 229 65 0 0 chrY 3773470 3773516 -20939563 + LTR66 LTR ERVL 394 439 -171 213 94 0 0 chrY 3773538 3773570 -20939509 + (CA)n Simple_repeat Simple_repeat 1 32 0 218 320 112 8 chrY 3774070 3774195 -20938884 - L2 LINE L2 -4 3309 3172 358 302 7 60 chrY 3774734 3774883 -20938196 - L2 LINE L2 -2 3311 3171 423 333 124 13 chrY 3775108 3775480 -20937599 - L2 LINE L2 -1310 2004 1592 24 32 0 0 chrY 3775840 3775871 -20937208 + AT_rich Low_complexity Low_complexity 1 31 0 183 311 16 0 chrY 3777247 3777308 -20935771 + L2 LINE L2 3246 3307 -6 851 256 49 67 chrY 3777819 3778163 -20934916 + MER93b LTR ERV1 34 371 -2 724 229 122 88 chrY 3778191 3778561 -20934518 + Charlie2 DNA MER1_type 1861 2252 -610 264 59 0 0 chrY 3778568 3778602 -20934477 + (TG)n Simple_repeat Simple_repeat 1 34 0 2034 124 7 7 chrY 3778602 3778884 -20934195 - AluSp SINE Alu -28 285 1 724 229 122 88 chrY 3778884 3778988 -20934091 + Charlie2 DNA MER1_type 2252 2351 -511 7822 36 2 0 chrY 3780182 3781348 -20931731 - L1PA4 LINE L1 -5 6150 4980 1157 23 0 0 chrY 3781348 3781477 -20931602 - AluYa5/8 SINE Alu -17 294 166 37742 70 15 1 chrY 3781477 3786395 -20926684 - L1PA4 LINE L1 -1156 4990 1 524 272 193 23 chrY 3786721 3787022 -20926057 - L2 LINE L2 -1177 2137 1786 887 218 38 85 chrY 3787022 3787190 -20925889 - AluSg SINE Alu 0 310 162 9374 56 2 0 chrY 3787190 3789095 -20923984 + L1PA4 LINE L1 4244 6154 -1 887 218 38 85 chrY 3789095 3789243 -20923836 - AluSg SINE Alu -148 162 9 752 327 80 35 chrY 3789247 3789844 -20923235 - L2 LINE L2 -1518 1796 1173 321 47 0 0 chrY 3790486 3790529 -20922550 + (TG)n Simple_repeat Simple_repeat 1 43 0 813 287 10 0 chrY 3790615 3790810 -20922269 + MIR SINE MIR 1 197 -65 220 296 99 0 chrY 3790810 3790891 -20922188 + MIR SINE MIR 52 140 -122 21 36 0 0 chrY 3791809 3791837 -20921242 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chrY 3792950 3792971 -20920108 + AT_rich Low_complexity Low_complexity 1 21 0 514 225 0 42 chrY 3793801 3793921 -20919158 + MER41E LTR ERV1 1 115 -397 1999 167 55 93 chrY 3794290 3794895 -20918184 - LTR1 LTR ERV1 -91 694 113 1222 164 22 13 chrY 3794873 3795104 -20917975 - LTR1 LTR ERV1 -552 233 1 * 246 295 74 11 chrY 3795237 3795332 -20917747 - LTR33A LTR ERVL -301 222 122 1732 183 0 3 chrY 3800933 3800949 -20912130 - AluSx SINE Alu -10 302 287 423 0 0 0 chrY 3800949 3800996 -20912083 + (TG)n Simple_repeat Simple_repeat 2 48 0 1732 183 0 3 chrY 3800996 3801280 -20911799 - AluSx SINE Alu -25 287 3 1778 171 20 0 chrY 3803060 3803353 -20909726 - AluSx SINE Alu -8 304 6 1093 264 40 0 chrY 3803364 3803522 -20909557 - AluJo SINE Alu -21 291 116 207 0 0 0 chrY 3803522 3803545 -20909534 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1093 264 40 0 chrY 3803545 3803659 -20909420 - AluJo SINE Alu -196 116 8 901 249 124 0 chrY 3806442 3806643 -20906436 + AluJb SINE Alu 57 282 -30 360 0 0 0 chrY 3806680 3806720 -20906359 + (CA)n Simple_repeat Simple_repeat 1 40 0 21 0 0 0 chrY 3807027 3807048 -20906031 + AT_rich Low_complexity Low_complexity 1 21 0 28 48 0 0 chrY 3807174 3807216 -20905863 + AT_rich Low_complexity Low_complexity 1 42 0 286 232 61 12 chrY 3815200 3815364 -20897715 + (TA)n Simple_repeat Simple_repeat 2 173 0 10579 134 11 11 chrY 3815811 3817716 -20895363 + L1PA7 LINE L1 2705 4608 -1538 5897 112 9 1 chrY 3817729 3818641 -20894438 + L1PA7 LINE L1 5232 6150 -4 250 219 29 29 chrY 3818641 3818746 -20894333 + (TA)n Simple_repeat Simple_repeat 2 106 0 283 392 17 0 chrY 3819302 3819422 -20893657 + L2 LINE L2 2921 3042 -271 17331 49 4 0 chrY 3819962 3822922 -20890157 - L1PA3 LINE L1 0 6155 3188 13298 47 1 0 chrY 3822924 3824681 -20888398 + L1PA3 LINE L1 1427 3185 -2961 289 275 35 0 chrY 3825186 3825357 -20887722 + (TA)n Simple_repeat Simple_repeat 1 177 0 213 198 28 0 chrY 3825490 3825596 -20887483 + (TA)n Simple_repeat Simple_repeat 1 109 0 17470 40 1 0 chrY 3825596 3828517 -20884562 + L1PA3 LINE L1 3213 6144 -11 522 146 35 0 chrY 3828524 3828695 -20884384 + (TA)n Simple_repeat Simple_repeat 1 177 0 32 26 0 0 chrY 3828700 3828739 -20884340 + AT_rich Low_complexity Low_complexity 1 39 0 480 197 13 6 chrY 3828739 3829048 -20884031 + (TA)n Simple_repeat Simple_repeat 1 311 0 306 193 11 23 chrY 3829059 3829235 -20883844 + (TA)n Simple_repeat Simple_repeat 2 175 0 724 239 0 0 chrY 3829237 3829392 -20883687 + AluSg/x SINE Alu 141 295 -17 27 29 0 0 chrY 3829663 3829697 -20883382 + AT_rich Low_complexity Low_complexity 1 34 0 821 294 28 21 chrY 3830806 3831092 -20881987 - AluJo SINE Alu -14 288 1 21 0 0 0 chrY 3831206 3831227 -20881852 + AT_rich Low_complexity Low_complexity 1 21 0 183 80 0 0 chrY 3832505 3832530 -20880549 + (A)n Simple_repeat Simple_repeat 1 25 0 839 257 70 15 chrY 3832554 3832881 -20880198 - L1MB5 LINE L1 -13 6161 5817 651 207 168 0 chrY 3832906 3833114 -20879965 - L1MB5 LINE L1 -428 5746 5504 323 175 210 21 chrY 3833124 3833267 -20879812 - L1MB5 LINE L1 -755 5423 5254 569 237 38 34 chrY 3833471 3833707 -20879372 - L1M3 LINE L1 -631 5549 5313 22 35 0 0 chrY 3834138 3834167 -20878912 + AT_rich Low_complexity Low_complexity 1 29 0 1193 205 4 17 chrY 3835465 3835699 -20877380 + AluSx SINE Alu 56 286 -26 281 251 35 34 chrY 3835708 3835757 -20877322 - L1MA1 LINE L1 -78 6224 6177 1375 232 0 29 chrY 3835757 3836067 -20877012 - AluJo SINE Alu -10 302 2 281 251 35 34 chrY 3836067 3836240 -20876839 - L1MA1 LINE L1 -125 6177 6000 2061 152 3 0 chrY 3836888 3837191 -20875888 - AluSx SINE Alu -8 304 1 1321 138 5 0 chrY 3837242 3837458 -20875621 - AluSp SINE Alu 0 312 96 1142 229 3 50 chrY 3837754 3838051 -20875028 + AluSx SINE Alu 3 285 -17 30 27 0 0 chrY 3838051 3838088 -20874991 + AT_rich Low_complexity Low_complexity 1 37 0 1032 292 10 17 chrY 3838116 3838414 -20874665 - AluJo SINE Alu -5 297 2 2680 129 197 69 chrY 3838418 3839028 -20874051 - LTR12 LTR ERV1 0 688 1 3629 148 8 2 chrY 3839035 3839649 -20873430 - HERV9 LTR ERV1 -25 8374 7757 1887 201 99 62 chrY 3839644 3840494 -20872585 - Harlequin LTR ERV1 -5176 1720 840 * 5050 146 3 11 chrY 3840495 3841367 -20871712 - Harlequin LTR ERV1 -3455 4944 4080 12221 140 16 15 chrY 3841374 3844422 -20868657 - Harlequin LTR ERV1 -5260 3139 4 1962 115 140 183 chrY 3844424 3845032 -20868047 - LTR12 LTR ERV1 -132 582 1 1734 185 30 3 chrY 3845185 3845483 -20867596 - AluSx SINE Alu -6 306 1 1248 213 89 55 chrY 3845824 3846227 -20866852 + MSTB LTR MaLR 6 422 -4 1662 189 0 30 chrY 3846433 3846734 -20866345 - AluY SINE Alu -18 293 2 746 334 42 25 chrY 3846842 3847291 -20865788 + L1 LINE L1 54 510 -5771 305 225 9 72 chrY 3848134 3848245 -20864834 + L1 LINE L1 3667 3770 -2580 340 318 105 7 chrY 3848565 3848717 -20864362 + AluJ/FLAM SINE Alu 1 87 -215 32 26 0 0 chrY 3849258 3849297 -20863782 + AT_rich Low_complexity Low_complexity 1 39 0 1172 82 6 0 chrY 3849401 3849571 -20863508 + (TTTC)n Simple_repeat Simple_repeat 1 171 0 1298 227 0 31 chrY 3849597 3849888 -20863191 - AluSx SINE Alu -26 286 5 1216 254 3 3 chrY 3849932 3850243 -20862836 - AluSx SINE Alu -1 311 1 261 278 56 24 chrY 3850710 3850836 -20862243 - MLT1F LTR MaLR -27 515 386 275 108 14 40 chrY 3851665 3851739 -20861340 + (TA)n Simple_repeat Simple_repeat 1 72 0 24 0 0 0 chrY 3852006 3852030 -20861049 + AT_rich Low_complexity Low_complexity 1 24 0 24 32 0 0 chrY 3852217 3852248 -20860831 + AT_rich Low_complexity Low_complexity 1 31 0 369 86 0 0 chrY 3854709 3854767 -20858312 + (CA)n Simple_repeat Simple_repeat 1 58 0 262 293 90 18 chrY 3854791 3854958 -20858121 - SST1 Satellite centromeric -11 1552 1374 271 77 15 62 chrY 3857190 3857255 -20855824 + (CA)n Simple_repeat Simple_repeat 1 62 0 234 0 0 0 chrY 3859438 3859464 -20853615 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 243 247 25 0 chrY 3859673 3859754 -20853325 + (CA)n Simple_repeat Simple_repeat 1 83 0 208 184 20 20 chrY 3862124 3862173 -20850906 + (CA)n Simple_repeat Simple_repeat 2 50 0 225 164 33 16 chrY 3864576 3864637 -20848442 + (CA)n Simple_repeat Simple_repeat 1 62 0 231 299 115 19 chrY 3864658 3864815 -20848264 - SST1 Satellite centromeric -4 1559 1388 23 0 0 0 chrY 3866159 3866182 -20846897 + AT_rich Low_complexity Low_complexity 1 23 0 225 250 0 0 chrY 3866691 3866751 -20846328 + (CA)n Simple_repeat Simple_repeat 1 60 0 229 286 13 13 chrY 3867084 3867161 -20845918 - SST1 Satellite centromeric -324 1239 1163 254 60 0 80 chrY 3867922 3867972 -20845107 + (CA)n Simple_repeat Simple_repeat 2 47 0 22 0 0 0 chrY 3869878 3869900 -20843179 + AT_rich Low_complexity Low_complexity 1 22 0 3644 68 2 4 chrY 3870180 3870515 -20842564 - L1PA3 LINE L1 0 6155 5820 2296 82 0 10 chrY 3870515 3870808 -20842271 - AluY SINE Alu -13 298 9 3644 68 2 4 chrY 3870808 3870943 -20842136 - L1PA3 LINE L1 -335 5820 5686 2154 32 0 0 chrY 3870943 3871220 -20841859 + L1P LINE L1 4979 5255 -891 200 189 40 14 chrY 3871453 3871527 -20841552 + (CA)n Simple_repeat Simple_repeat 2 77 0 216 158 0 0 chrY 3873703 3873741 -20839338 + T-rich Low_complexity Low_complexity 1 38 0 233 100 0 67 chrY 3873946 3874006 -20839073 + (CA)n Simple_repeat Simple_repeat 1 56 0 182 279 139 0 chrY 3875044 3875123 -20837956 + L3 LINE CR1 1397 1486 -91 9429 182 32 21 chrY 3877028 3879336 -20833743 + Harlequin LTR ERV1 1684 4094 -3719 3665 215 11 4 chrY 3879335 3880828 -20832251 + Harlequin LTR ERV1 4386 5999 -1814 * 577 285 0 0 chrY 3880836 3880959 -20832120 + Harlequin LTR ERV1 5467 5589 -1307 * 737 210 156 0 chrY 3880954 3881121 -20831958 + Harlequin LTR ERV1 6703 6895 -1 921 256 3 36 chrY 3881121 3881482 -20831597 + LTR2 LTR ERV1 1 449 0 231 61 0 0 chrY 3883768 3883801 -20829278 + (CA)n Simple_repeat Simple_repeat 2 34 0 238 330 0 0 chrY 3884160 3884254 -20828825 - SST1 Satellite centromeric -324 1239 1146 198 0 0 0 chrY 3886106 3886128 -20826951 + (CA)n Simple_repeat Simple_repeat 1 22 0 180 77 0 0 chrY 3888500 3888526 -20824553 + (CA)n Simple_repeat Simple_repeat 1 26 0 202 146 18 18 chrY 3888643 3888698 -20824381 + (CA)n Simple_repeat Simple_repeat 2 56 0 299 328 48 40 chrY 3889605 3889980 -20823099 - SST1 Satellite centromeric -963 600 223 183 80 0 0 chrY 3891164 3891189 -20821890 + (A)n Simple_repeat Simple_repeat 1 25 0 309 328 58 31 chrY 3893255 3893777 -20819302 - SST1 Satellite centromeric -962 601 66 444 298 63 54 chrY 3895824 3896287 -20816792 - SST1 Satellite centromeric -965 598 132 252 154 0 0 chrY 3897320 3897372 -20815707 + (CA)n Simple_repeat Simple_repeat 1 52 0 2094 143 0 0 chrY 3898835 3899135 -20813944 + AluY SINE Alu 1 300 -11 284 268 14 0 chrY 3903734 3903805 -20809274 - SST1 Satellite centromeric -336 1227 1156 237 298 32 40 chrY 3904617 3904741 -20808338 - SST1 Satellite centromeric -1303 260 138 207 114 0 0 chrY 3905778 3905813 -20807266 + (CA)n Simple_repeat Simple_repeat 2 36 0 234 272 47 70 chrY 3906672 3906885 -20806194 - SST1 Satellite centromeric -1039 524 317 268 234 21 0 chrY 3908113 3908207 -20804872 + (CA)n Simple_repeat Simple_repeat 1 96 0 225 83 0 0 chrY 3910431 3910467 -20802612 + (CA)n Simple_repeat Simple_repeat 1 36 0 281 319 55 40 chrY 3911458 3911787 -20801292 - SST1 Satellite centromeric -1039 524 191 250 244 22 0 chrY 3912894 3912984 -20800095 + (CA)n Simple_repeat Simple_repeat 1 92 0 234 143 0 0 chrY 3914574 3914623 -20798456 + (CA)n Simple_repeat Simple_repeat 2 50 0 340 314 64 54 chrY 3915540 3915932 -20797147 - SST1 Satellite centromeric -961 602 207 258 95 0 0 chrY 3916803 3916845 -20796234 + (T)n Simple_repeat Simple_repeat 1 42 0 381 306 50 71 chrY 3918053 3918435 -20794644 - SST1 Satellite centromeric -963 600 227 183 114 0 0 chrY 3919290 3919325 -20793754 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 196 161 32 0 chrY 3919532 3919594 -20793485 + (CA)n Simple_repeat Simple_repeat 1 64 0 267 307 93 85 chrY 3919633 3920011 -20793068 - SST1 Satellite centromeric -27 1536 1156 294 87 0 0 chrY 3921941 3921987 -20791092 + (CA)n Simple_repeat Simple_repeat 1 46 0 17734 46 3 1 chrY 3922149 3925107 -20787972 - L1PA4 LINE L1 -1 6154 3189 1542 40 0 0 chrY 3925107 3925308 -20787771 + L1PA4 LINE L1 2984 3184 -2962 180 179 0 0 chrY 3926850 3926889 -20786190 + (CA)n Simple_repeat Simple_repeat 1 39 0 231 284 14 14 chrY 3927266 3927340 -20785739 - SST1 Satellite centromeric -334 1229 1156 262 282 32 40 chrY 3928123 3928247 -20784832 - SST1 Satellite centromeric -1303 260 138 203 111 0 74 chrY 3929288 3929342 -20783737 + (CA)n Simple_repeat Simple_repeat 1 50 0 195 42 0 0 chrY 3929511 3929535 -20783544 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 227 338 0 0 chrY 3932277 3932354 -20780725 - SST1 Satellite centromeric -339 1224 1148 318 26 0 0 chrY 3934321 3934360 -20778719 + (CA)n Simple_repeat Simple_repeat 1 39 0 246 355 51 38 chrY 3935289 3935818 -20777261 - SST1 Satellite centromeric -962 601 66 234 107 27 53 chrY 3936764 3936839 -20776240 + (CA)n Simple_repeat Simple_repeat 1 73 0 374 296 68 52 chrY 3937704 3937954 -20775125 - SST1 Satellite centromeric -961 602 349 186 71 0 0 chrY 3938442 3938470 -20774609 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 285 214 20 10 chrY 3938694 3938792 -20774287 + (CA)n Simple_repeat Simple_repeat 2 100 0 263 319 60 57 chrY 3939636 3939884 -20773195 - SST1 Satellite centromeric -963 600 352 232 303 92 60 chrY 3941160 3941411 -20771668 - SST1 Satellite centromeric -1167 396 138 247 250 22 0 chrY 3942459 3942551 -20770528 + (CA)n Simple_repeat Simple_repeat 1 94 0 277 283 97 48 chrY 3942554 3942699 -20770380 - SST1 Satellite centromeric -25 1538 1387 230 287 85 60 chrY 3943537 3943854 -20769225 - SST1 Satellite centromeric -1102 461 137 542 306 66 46 chrY 3945809 3946263 -20766816 - SST1 Satellite centromeric -963 600 138 362 295 80 66 chrY 3948151 3948663 -20764416 - SST1 Satellite centromeric -962 601 83 180 97 0 0 chrY 3949677 3949708 -20763371 + (CA)n Simple_repeat Simple_repeat 2 32 0 245 290 103 19 chrY 3949732 3949887 -20763192 - SST1 Satellite centromeric -11 1552 1385 289 292 78 41 chrY 3950916 3951159 -20761920 - SST1 Satellite centromeric -1283 280 29 195 42 0 0 chrY 3951531 3951555 -20761524 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 195 42 0 0 chrY 3951626 3951650 -20761429 + (GAAA)n Simple_repeat Simple_repeat 2 25 0 222 62 0 0 chrY 3951773 3951805 -20761274 + (CA)n Simple_repeat Simple_repeat 1 32 0 6426 26 0 0 chrY 3951971 3952707 -20760372 + L1PA2 LINE L1 5412 6147 -8 26 50 0 0 chrY 3952772 3952812 -20760267 + AT_rich Low_complexity Low_complexity 1 40 0 339 149 0 0 chrY 3953654 3953728 -20759351 + (CA)n Simple_repeat Simple_repeat 1 74 0 310 309 77 77 chrY 3953752 3954157 -20758922 - SST1 Satellite centromeric -11 1552 1148 283 317 50 50 chrY 3954635 3955033 -20758046 - SST1 Satellite centromeric -959 604 207 185 83 28 0 chrY 3956122 3956158 -20756921 + (CA)n Simple_repeat Simple_repeat 1 37 0 342 276 58 46 chrY 3957168 3957342 -20755737 - SST1 Satellite centromeric -1039 524 349 388 300 74 74 chrY 3960083 3960473 -20752606 - SST1 Satellite centromeric -11 1552 1163 403 325 55 46 chrY 3961281 3961740 -20751339 - SST1 Satellite centromeric -962 601 139 28 0 0 0 chrY 3962290 3962318 -20750761 + AT_rich Low_complexity Low_complexity 1 28 0 273 29 0 0 chrY 3962582 3962616 -20750463 + (CA)n Simple_repeat Simple_repeat 2 35 0 508 304 66 33 chrY 3963339 3963734 -20749345 - SST1 Satellite centromeric -1039 524 117 180 167 0 0 chrY 3964764 3964812 -20748267 + (CA)n Simple_repeat Simple_repeat 1 48 0 243 315 83 79 chrY 3965713 3966218 -20746861 - SST1 Satellite centromeric -963 600 94 2111 192 35 53 chrY 3967107 3967711 -20745368 - LTR1 LTR ERV1 -104 681 89 596 165 8 25 chrY 3967716 3967837 -20745242 - LTR1 LTR ERV1 -666 119 1 23 33 0 0 chrY 3968834 3968864 -20744215 + AT_rich Low_complexity Low_complexity 1 30 0 283 298 12 0 chrY 3969015 3969099 -20743980 - FRAM SINE Alu -13 153 69 436 54 0 27 chrY 3969550 3969624 -20743455 + (TA)n Simple_repeat Simple_repeat 1 72 0 292 235 0 20 chrY 3969731 3969833 -20743246 + (TA)n Simple_repeat Simple_repeat 2 101 0 1160 258 3 3 chrY 3970482 3970765 -20742314 + AluSx SINE Alu 1 283 -19 1392 224 0 14 chrY 3970823 3971113 -20741966 + AluSx SINE Alu 1 286 -16 1349 51 11 0 chrY 3971137 3971154 -20741925 + (GAAA)n Simple_repeat Simple_repeat 1 196 0 1349 51 11 0 chrY 3971154 3971331 -20741748 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 404 242 7 111 chrY 3972114 3972267 -20740812 - FLAM_C SINE Alu -6 137 1 238 325 8 26 chrY 3972384 3972501 -20740578 + MLT1E LTR MaLR 361 475 -118 207 0 0 0 chrY 3972510 3972533 -20740546 + (TG)n Simple_repeat Simple_repeat 2 24 0 498 352 60 33 chrY 3973543 3973995 -20739084 - L1M3b LINE L1 -5771 510 47 1618 205 0 22 chrY 3974074 3974386 -20738693 + AluY SINE Alu 2 306 -5 1146 234 54 56 chrY 3974591 3975018 -20738061 - MSTB1 LTR MaLR -6 426 1 244 332 18 73 chrY 3975291 3975352 -20737727 - L1M3de LINE L1 -5977 676 613 1971 151 3 3 chrY 3975352 3975656 -20737423 + AluSx SINE Alu 1 304 -8 244 332 18 73 chrY 3975656 3975814 -20737265 - L1M3de LINE L1 -6040 613 469 18756 124 44 43 chrY 3975814 3979396 -20733683 + HERV17 LTR ERV1 6 3139 -236 5359 128 6 10 chrY 3979403 3980272 -20732807 + HERV17 LTR ERV1 4080 4944 -3455 1586 187 59 57 chrY 3980273 3981282 -20731797 + HERV17 LTR ERV1 706 1720 -5176 * 3302 138 74 2 chrY 3981278 3981857 -20731222 + HERV17 LTR ERV1 7758 8378 -21 3190 143 283 0 chrY 3981860 3982282 -20730797 + LTR12 LTR ERV1 1 303 -523 2868 10 0 0 chrY 3982282 3982593 -20730486 + AluY SINE Alu 1 311 0 3190 143 283 0 chrY 3982593 3982814 -20730265 + LTR12 LTR ERV1 303 826 0 1095 269 3 29 chrY 3982818 3983127 -20729952 + AluJo SINE Alu 2 302 0 1217 254 3 17 chrY 3983177 3983465 -20729614 - AluSx SINE Alu -16 286 3 1422 129 5 0 chrY 3983767 3983969 -20729110 + AluSp SINE Alu 102 304 -9 648 141 0 0 chrY 3984025 3984124 -20728955 + AluS SINE Alu 1 99 -214 366 277 39 0 chrY 3984137 3984291 -20728788 + L1MA4 LINE L1 6013 6176 -124 580 264 34 34 chrY 3984292 3984470 -20728609 + AluJb SINE Alu 2 179 -133 27 0 0 0 chrY 3985756 3985783 -20727296 + AT_rich Low_complexity Low_complexity 1 27 0 835 286 19 19 chrY 3985891 3986150 -20726929 + AluJo SINE Alu 2 260 -52 25 0 0 0 chrY 3986674 3986699 -20726380 + AT_rich Low_complexity Low_complexity 1 25 0 1424 227 0 3 chrY 3986981 3987280 -20725799 - AluSg SINE Alu -12 298 1 353 81 16 0 chrY 3987286 3987348 -20725731 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 21 36 0 0 chrY 3987360 3987388 -20725691 + AT_rich Low_complexity Low_complexity 1 28 0 7115 50 0 0 chrY 3988414 3989887 -20723192 - L1PA4 LINE L1 -1 6154 4687 2933 41 18 0 chrY 3989887 3990281 -20722798 + L1PA4 LINE L1 4301 4701 -1445 189 394 21 0 chrY 3990307 3990401 -20722678 - L2 LINE L2 -290 3023 2928 180 269 39 0 chrY 3990574 3990626 -20722453 - L2 LINE L2 -713 2601 2548 272 251 55 6 chrY 3990927 3991090 -20721989 + (TA)n Simple_repeat Simple_repeat 1 171 0 6013 101 6 6 chrY 3991090 3992004 -20721075 - L1PA7 LINE L1 -4 6150 5231 9641 142 45 9 chrY 3992016 3993853 -20719226 - L1PA7 LINE L1 -1538 4608 2706 31 0 0 0 chrY 3994158 3994189 -20718890 + AT_rich Low_complexity Low_complexity 1 31 0 230 257 68 0 chrY 3994216 3994364 -20718715 + (TA)n Simple_repeat Simple_repeat 2 159 0 5909 101 15 26 chrY 3997396 3998357 -20714722 - MER11C LTR ERVK 0 1071 122 6294 27 7 0 chrY 3998357 3999095 -20713984 + L1PA2 LINE L1 5409 6151 -4 30 45 0 0 chrY 3999095 3999139 -20713940 + AT_rich Low_complexity Low_complexity 1 44 0 1014 72 20 3 chrY 3999184 3999338 -20713741 - MER11B LTR ERVK -1006 260 1 239 286 6 57 chrY 4003966 4004141 -20708938 + CT-rich Low_complexity Low_complexity 1 166 0 33 43 0 0 chrY 4004762 4004809 -20708270 + AT_rich Low_complexity Low_complexity 1 47 0 375 23 0 0 chrY 4005257 4005301 -20707778 + (TG)n Simple_repeat Simple_repeat 1 44 0 782 255 68 0 chrY 4005326 4005518 -20707561 - AluJb SINE Alu -30 282 78 4115 86 2 9 chrY 4007605 4008178 -20704901 - L1PA5 LINE L1 0 6154 5586 1731 95 8 8 chrY 4008178 4008487 -20704592 + L1PA5 LINE L1 5337 5574 -580 1149 248 3 18 chrY 4009171 4009457 -20703622 + AluJo SINE Alu 8 289 -23 1670 170 21 18 chrY 4009469 4009752 -20703327 + AluSx SINE Alu 9 292 -20 25 90 0 0 chrY 4014238 4014305 -20698774 + AT_rich Low_complexity Low_complexity 1 67 0 3403 180 37 20 chrY 4015261 4016049 -20697030 - L1PA16 LINE L1 -9 6157 5357 13185 40 1 0 chrY 4016063 4017744 -20695335 - L1PA4 LINE L1 -918 5228 3547 7261 39 9 0 chrY 4017736 4018668 -20694411 + L1PA4 LINE L1 5215 6154 -1 22 0 0 0 chrY 4018847 4018869 -20694210 + AT_rich Low_complexity Low_complexity 1 22 0 34 24 0 0 chrY 4019147 4019188 -20693891 + AT_rich Low_complexity Low_complexity 1 41 0 290 285 40 64 chrY 4021248 4021528 -20691551 - L1M3 LINE L1 -642 5529 5257 193 324 27 27 chrY 4021878 4021952 -20691127 + MER5A DNA MER1_type 43 116 -73 423 0 0 0 chrY 4022035 4022105 -20690974 + (CA)n Simple_repeat Simple_repeat 1 117 0 423 0 0 0 chrY 4022105 4022152 -20690927 + (CA)n Simple_repeat Simple_repeat 2 48 0 412 313 121 29 chrY 4023253 4023534 -20689545 - L2 LINE L2 -812 2502 2196 278 266 23 0 chrY 4029236 4029364 -20683715 + (TA)n Simple_repeat Simple_repeat 1 131 0 21 0 0 0 chrY 4029781 4029802 -20683277 + AT_rich Low_complexity Low_complexity 1 21 0 205 343 37 19 chrY 4029821 4029929 -20683150 - MIR3 SINE MIR -89 119 10 226 300 82 18 chrY 4030900 4031010 -20682069 + MER117 DNA MER1_type 1 117 -80 264 262 287 8 chrY 4031228 4031350 -20681729 - MIR SINE MIR -7 255 100 949 142 5 63 chrY 4032973 4033136 -20679943 + MER34 LTR ERV1 11 163 -379 2525 118 6 3 chrY 4033136 4033499 -20679580 + THE1B LTR MaLR 1 364 0 949 142 5 63 chrY 4033499 4033525 -20679554 + MER34 LTR ERV1 163 189 -353 730 251 50 82 chrY 4033659 4033978 -20679101 + L2 LINE L2 3005 3313 0 2013 112 7 4 chrY 4034136 4034414 -20678665 + AluSx SINE Alu 3 281 -31 458 17 0 17 chrY 4034417 4034477 -20678602 + (TAAA)n Simple_repeat Simple_repeat 2 60 0 22 70 0 0 chrY 4034684 4034727 -20678352 + AT_rich Low_complexity Low_complexity 1 43 0 374 285 81 41 chrY 4034921 4035167 -20677912 - L1MC/D LINE L1 -844 5515 5260 709 278 17 0 chrY 4035422 4035602 -20677477 + MER5A DNA MER1_type 2 184 -5 1852 200 28 16 chrY 4035721 4036169 -20676910 + MER89 LTR ERV1 6 559 0 1714 92 103 22 chrY 4037323 4037596 -20675483 - AluY SINE Alu -16 295 1 279 286 42 74 chrY 4037727 4037916 -20675163 + MLT1K LTR MaLR 403 585 -3 259 270 16 0 chrY 4038318 4038388 -20674691 + (TATATG)n Simple_repeat Simple_repeat 1 71 0 280 161 36 0 chrY 4038704 4038760 -20674319 + Alu SINE Alu 245 302 0 27 0 0 0 chrY 4038793 4038820 -20674259 + AT_rich Low_complexity Low_complexity 1 27 0 1348 271 31 29 chrY 4038853 4039306 -20673773 + MER31B LTR ERV1 13 466 0 245 222 16 0 chrY 4039318 4039381 -20673698 - L1ME1 LINE L1 -86 6080 6017 25 31 0 0 chrY 4039394 4039426 -20673653 + AT_rich Low_complexity Low_complexity 1 32 0 28 29 0 0 chrY 4040832 4040867 -20672212 + AT_rich Low_complexity Low_complexity 1 35 0 2290 103 3 0 chrY 4041452 4041762 -20671317 - AluY SINE Alu 0 311 1 348 64 0 0 chrY 4042514 4042561 -20670518 + (TG)n Simple_repeat Simple_repeat 2 48 0 2083 105 3 7 chrY 4042631 4042926 -20670153 + AluSq SINE Alu 1 294 -19 193 325 48 36 chrY 4043038 4043121 -20669958 + L2 LINE L2 3189 3272 0 191 284 40 14 chrY 4043198 4043272 -20669807 - MIR3 SINE MIR -3 205 130 2177 178 31 5 chrY 4043273 4043694 -20669385 + MSTB1 LTR MaLR 1 432 0 461 250 56 19 chrY 4044342 4044502 -20668577 - HAL1 LINE L1 -131 2376 2211 528 310 6 6 chrY 4044551 4044709 -20668370 + LTR16B LTR ERVL 2 159 -305 331 293 12 0 chrY 4044713 4044795 -20668284 - Charlie1 DNA MER1_type -2678 83 1 241 94 0 0 chrY 4044875 4044907 -20668172 - Tigger1 DNA MER2_type 0 2418 2387 * 550 171 0 18 chrY 4044905 4045016 -20668063 + MSTB1 LTR MaLR 172 280 -152 * 12863 168 25 11 chrY 4045015 4047327 -20665752 - Tigger1 DNA MER2_type -30 2388 45 8485 260 33 48 chrY 4047334 4050530 -20662549 + L1PB3 LINE L1 10 3145 -3703 669 237 162 13 chrY 4050544 4050852 -20662227 - L1 LINE L1 -2988 3158 2805 6043 220 62 14 chrY 4050853 4053907 -20659172 + L1PB3 LINE L1 3149 6516 -340 342 0 0 0 chrY 4053907 4053945 -20659134 + (TA)n Simple_repeat Simple_repeat 1 38 0 6043 220 62 14 chrY 4053945 4054304 -20658775 + L1PB3 LINE L1 6516 6856 0 28 0 0 0 chrY 4054308 4054336 -20658743 + AT_rich Low_complexity Low_complexity 1 28 0 4952 189 57 9 chrY 4054354 4056405 -20656674 + L1MA4A LINE L1 4149 6298 -5 351 186 0 0 chrY 4056408 4056467 -20656612 - Tigger1 DNA MER2_type -2359 59 1 388 352 55 11 chrY 4057639 4057821 -20655258 + L3 LINE CR1 1379 1568 -9 532 371 4 9 chrY 4057871 4058103 -20654976 + L2 LINE L2 2160 2390 -924 341 307 16 8 chrY 4058187 4058314 -20654765 - MER91B DNA MER1_type -61 129 2 587 312 82 52 chrY 4058329 4058672 -20654407 + L2 LINE L2 2384 2736 -578 443 344 144 23 chrY 4059332 4059829 -20653250 + L2 LINE L2 2737 3300 -13 2122 95 34 0 chrY 4060137 4060431 -20652648 - AluY SINE Alu -7 304 1 247 309 55 27 chrY 4060432 4060542 -20652537 - L2 LINE L2 -22 3291 3179 1483 186 197 0 chrY 4060723 4061084 -20651995 + MER66A LTR ERV1 2 433 -45 22 0 0 0 chrY 4061702 4061724 -20651355 + AT_rich Low_complexity Low_complexity 1 22 0 1467 167 48 0 chrY 4062265 4062516 -20650563 - Tigger3(Golem) DNA MER2_type -2 3027 2765 1187 171 138 30 chrY 4063342 4063646 -20649433 - L1MC3 LINE L1 -21 7764 7428 2265 48 7 14 chrY 4063657 4063951 -20649128 - AluY SINE Alu -19 292 1 1385 250 121 13 chrY 4063952 4064348 -20648731 + MER31B LTR ERV1 7 445 -21 2335 188 22 53 chrY 4064351 4064857 -20648222 + MLT2B1 LTR ERVL 21 510 -10 4068 221 51 20 chrY 4064889 4065920 -20647159 - L1MC3 LINE L1 -352 7433 6371 2232 151 48 10 chrY 4065920 4066332 -20646747 + MSTA LTR MaLR 1 428 0 8641 186 22 7 chrY 4066332 4067959 -20645120 + MSTA-int LTR MaLR 1 1651 0 1930 152 53 6 chrY 4067962 4068304 -20644775 + MSTA LTR MaLR 4 361 -67 320 211 0 56 chrY 4068304 4068394 -20644685 - L1MC4 LINE L1 -1344 6698 6614 209 207 0 17 chrY 4068396 4068454 -20644625 + (CATATA)n Simple_repeat Simple_repeat 6 62 0 372 96 0 0 chrY 4068457 4068509 -20644570 + MSTA LTR MaLR 377 428 0 4140 228 39 36 chrY 4068532 4069361 -20643718 - L1MC3 LINE L1 -748 5398 4573 6478 62 0 12 chrY 4069361 4070205 -20642874 + L1PA6 LINE L1 5321 6154 0 4140 228 39 36 chrY 4070205 4070234 -20642845 - L1MC3 LINE L1 -1573 4573 4546 1358 172 39 88 chrY 4070234 4070618 -20642461 - MLT1A1 LTR MaLR 0 365 1 4140 228 39 36 chrY 4070618 4071454 -20641625 - L1MC3 LINE L1 -1600 4546 4656 1937 157 0 0 chrY 4071454 4071754 -20641325 + AluSx SINE Alu 1 300 -12 4140 228 39 36 chrY 4071754 4072023 -20641056 - L1MC3 LINE L1 -1489 4657 4390 3063 147 85 5 chrY 4072091 4072677 -20640402 - L1PA16 LINE L1 -2 6164 5532 1830 224 30 72 chrY 4072678 4073208 -20639871 + MLT2B3 LTR ERVL 1 508 -46 8415 53 9 0 chrY 4073210 4075060 -20638019 - L1PA5 LINE L1 0 6154 4291 1917 23 0 0 chrY 4075060 4075279 -20637800 + L1P LINE L1 4027 4245 -1901 491 128 13 3 chrY 4075280 4075383 -20637696 + MLT2A2 LTR ERVL 386 453 0 3629 208 18 14 chrY 4075383 4076462 -20636617 - L1PA16 LINE L1 -631 5535 4448 186 71 0 0 chrY 4076462 4076490 -20636589 + (TG)n Simple_repeat Simple_repeat 1 28 0 3629 208 18 14 chrY 4076490 4076530 -20636549 - L1PA16 LINE L1 -1718 4448 4410 916 255 45 16 chrY 4076653 4077159 -20635920 - L1MC3 LINE L1 -2877 3269 2749 680 288 25 25 chrY 4077187 4077423 -20635656 + L1M4 LINE L1 24 259 -6283 9628 211 11 19 chrY 4077598 4078238 -20634841 + L1 LINE L1 17 660 -6905 2196 125 3 0 chrY 4078238 4078541 -20634538 + AluSq SINE Alu 1 304 -9 9628 211 11 19 chrY 4078541 4079830 -20633249 + L1 LINE L1 660 1931 -5634 972 192 4 73 chrY 4079832 4079919 -20633160 + L1 LINE L1 5235 5326 -2239 2356 100 0 0 chrY 4079919 4080229 -20632850 + AluSg SINE Alu 1 310 0 972 192 4 73 chrY 4080229 4080386 -20632693 + L1 LINE L1 5326 5462 -2103 243 143 0 0 chrY 4080387 4080422 -20632657 + MER61E LTR ERV1 531 565 -4 1657 269 52 37 chrY 4080435 4081237 -20631842 - L1ME3A LINE L1 -180 5990 5176 25 0 0 0 chrY 4081539 4081564 -20631515 + AT_rich Low_complexity Low_complexity 1 25 0 55 48 0 0 chrY 4083214 4083297 -20629782 + AT_rich Low_complexity Low_complexity 1 83 0 400 315 27 0 chrY 4083564 4083675 -20629404 - LTR16C LTR ERVL -314 177 64 239 208 217 19 chrY 4083785 4083891 -20629188 + MIR SINE MIR 122 248 -14 33 66 0 0 chrY 4084100 4084161 -20628918 + AT_rich Low_complexity Low_complexity 1 61 0 478 352 102 20 chrY 4084645 4084989 -20628090 + L2 LINE L2 2304 2675 -639 243 296 70 0 chrY 4084993 4085064 -20628015 + L2 LINE L2 3228 3303 -10 562 351 32 59 chrY 4085274 4085715 -20627364 + L2 LINE L2 2844 3272 0 1064 325 27 19 chrY 4085816 4086229 -20626850 + LTR16A LTR ERVL 30 445 -5 258 236 18 0 chrY 4086390 4086445 -20626634 + MER39 LTR ERV1 1 56 -651 * 811 269 71 47 chrY 4086440 4086804 -20626275 + MER39 LTR ERV1 335 707 0 246 283 74 30 chrY 4087289 4087423 -20625656 + LTR33A LTR ERVL 294 433 -88 191 167 24 0 chrY 4088598 4088640 -20624439 + CT-rich Low_complexity Low_complexity 2 44 0 4322 176 18 44 chrY 4089097 4090061 -20623018 - L1MA10 LINE L1 0 6334 5396 391 248 202 0 chrY 4090065 4090194 -20622885 + MER50 LTR ERV1 14 168 -566 1498 218 89 40 chrY 4090258 4090708 -20622371 + MER50 LTR ERV1 241 712 -22 3332 218 22 46 chrY 4090724 4091721 -20621358 - L1MA10 LINE L1 -745 5401 4443 1885 148 58 18 chrY 4091721 4092051 -20621028 - MER61A LTR ERV1 0 343 1 3332 218 22 46 chrY 4092051 4092062 -20621017 - L1MA10 LINE L1 -1703 4443 4433 24694 102 33 21 chrY 4092062 4094689 -20618390 - MER61A-int LTR ERV1 -11 5206 2519 4886 81 5 77 chrY 4094689 4095430 -20617649 - LTR12 LTR ERV1 0 688 1 24694 102 33 21 chrY 4095430 4096556 -20616523 - MER61A-int LTR ERV1 -2698 2519 1408 321 47 0 0 chrY 4096555 4096598 -20616481 - MER61A-int LTR ERV1 -3855 1362 1320 * 1321 170 31 40 chrY 4096591 4097196 -20615883 - MER61A-int LTR ERV1 -4440 777 1 1376 163 150 3 chrY 4097196 4097490 -20615589 - MER61A LTR ERV1 0 343 7 6539 219 65 47 chrY 4097492 4099727 -20613352 - L1MA10 LINE L1 -1698 4448 2172 24 0 0 0 chrY 4099738 4099762 -20613317 + AT_rich Low_complexity Low_complexity 1 24 0 4793 189 2 9 chrY 4099802 4100712 -20612367 - L1PA16 LINE L1 -6 6160 5257 1875 249 25 2 chrY 4101046 4101480 -20611599 + MLT1C LTR MaLR 3 446 -21 2007 205 29 20 chrY 4101480 4101928 -20611151 - MER66A LTR ERV1 0 478 27 756 235 0 0 chrY 4101935 4102071 -20611008 - MER66A-int LTR ERV1 0 6676 6541 437 210 56 31 chrY 4102071 4102233 -20610846 + L1M1 LINE L1 2711 3205 -4361 251 0 59 0 chrY 4102274 4102308 -20610771 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 271 362 8 16 chrY 4102998 4103125 -20609954 + L1PBb LINE L1 768 893 -5957 275 294 11 11 chrY 4103579 4103671 -20609408 + L1PBb LINE L1 1473 1564 -5285 * 10324 234 32 33 chrY 4103656 4108903 -20604176 + L1PA16 LINE L1 1335 6682 -187 40 87 0 0 chrY 4108932 4109035 -20604044 + AT_rich Low_complexity Low_complexity 1 103 0 333 150 159 9 chrY 4109040 4109153 -20603926 + L1MA7 LINE L1 6086 6215 -76 243 61 0 0 chrY 4109155 4109188 -20603891 + (TG)n Simple_repeat Simple_repeat 2 34 0 11423 166 27 2 chrY 4109194 4111016 -20602063 - L1PA12 LINE L1 -5712 1869 1 1264 325 61 103 chrY 4111591 4112335 -20600744 - L2 LINE L2 -2016 1298 524 1944 143 52 25 chrY 4112335 4112698 -20600381 + THE1C LTR MaLR 1 373 -2 229 62 31 0 chrY 4112698 4112730 -20600349 + THE1B LTR MaLR 332 364 0 1264 325 61 103 chrY 4112730 4113199 -20599880 - L2 LINE L2 -2788 526 106 36 70 0 0 chrY 4113598 4113669 -20599410 + AT_rich Low_complexity Low_complexity 1 71 0 3935 136 71 37 chrY 4113698 4114432 -20598647 - LTR1 LTR ERV1 0 785 27 571 293 68 60 chrY 4114542 4114942 -20598137 + L1ME1 LINE L1 2 404 -5641 1629 253 207 40 chrY 4114968 4115943 -20597136 + L1ME1 LINE L1 542 1353 -5211 1276 188 4 174 chrY 4115943 4116442 -20596637 - MLT2D LTR ERVL 0 414 1 1629 253 207 40 chrY 4116442 4117139 -20595940 + L1ME1 LINE L1 1353 1932 -4632 2316 108 3 0 chrY 4117139 4117444 -20595635 + AluSp SINE Alu 1 306 -7 1629 253 207 40 chrY 4117444 4117531 -20595548 + L1ME1 LINE L1 1932 2608 -3956 819 134 0 8 chrY 4117528 4117662 -20595417 - L1PA16 LINE L1 -263 5903 5771 * 785 164 16 28 chrY 4117649 4117877 -20595202 + L1PA16 LINE L1 5905 6165 -1 * 381 340 32 26 chrY 4117897 4118305 -20594774 + L1ME3 LINE L1 5482 5888 -274 * 36472 43 33 2 chrY 4118293 4124307 -20588772 + L1PA3 LINE L1 2 6155 0 1548 260 40 37 chrY 4124539 4125239 -20587840 + L1ME1 LINE L1 2618 3319 -3245 783 238 77 35 chrY 4125241 4125507 -20587572 + L1ME1 LINE L1 4120 4404 -2160 1971 216 41 5 chrY 4125507 4125918 -20587161 - MSTB LTR MaLR 0 426 1 783 238 77 35 chrY 4125918 4125991 -20587088 + L1ME1 LINE L1 4404 4473 -2091 * 3126 217 55 6 chrY 4125989 4126782 -20586297 + L1MC3 LINE L1 6945 7776 -9 1107 281 24 36 chrY 4127124 4127622 -20585457 - L1M4 LINE L1 -743 5403 4912 2383 267 35 34 chrY 4127647 4128831 -20584248 + L1ME1 LINE L1 5388 6569 -15 4031 153 24 1 chrY 4128984 4129681 -20583398 - L1MA1 LINE L1 -4 6298 5586 589 135 11 0 chrY 4129681 4129770 -20583309 - L1M1 LINE L1 -606 5696 5607 * 1823 205 14 0 chrY 4129769 4130139 -20582940 - L1M1 LINE L1 -1083 5063 4689 1488 223 8 51 chrY 4130239 4130594 -20582485 + MLT1A1 LTR MaLR 1 340 -25 6543 48 2 5 chrY 4130596 4131412 -20581667 - L1PA7 LINE L1 -13 6141 5328 2671 303 36 20 chrY 4131432 4132337 -20580742 - L1M4 LINE L1 -5621 921 2 3690 252 58 65 chrY 4132406 4134398 -20578681 - L1MDb LINE L1 -1525 4881 2904 5263 209 63 23 chrY 4134511 4135590 -20577489 - L1MC3 LINE L1 -9 7776 6627 1788 198 19 3 chrY 4135590 4135949 -20577130 + MLT1A1 LTR MaLR 1 365 0 5263 209 63 23 chrY 4135949 4136259 -20576820 - L1MC3 LINE L1 -1158 6627 6331 3696 228 40 24 chrY 4136275 4137451 -20575628 - L1MB4 LINE L1 -1 6179 5024 198 71 0 0 chrY 4137451 4137479 -20575600 + (TTG)n Simple_repeat Simple_repeat 3 30 0 1710 173 7 0 chrY 4137482 4137766 -20575313 - AluJb SINE Alu -26 286 1 3696 228 40 24 chrY 4137766 4138428 -20574651 - L1MB4 LINE L1 -1157 5023 4309 462 255 68 0 chrY 4138418 4138610 -20574469 - L1M4 LINE L1 -807 5339 5135 * 860 257 49 6 chrY 4138589 4138935 -20574144 - L1MDb LINE L1 -3937 2469 2109 23 68 0 0 chrY 4138993 4139037 -20574042 + AT_rich Low_complexity Low_complexity 1 44 0 946 159 25 18 chrY 4139041 4139204 -20573875 - AluSg/x SINE Alu -20 292 129 2781 245 47 64 chrY 4139204 4140694 -20572385 - L1MDb LINE L1 -4458 1948 468 394 193 11 23 chrY 4141809 4141897 -20571182 + MER103 DNA DNA 6 92 -74 449 276 98 74 chrY 4142269 4142740 -20570339 + L1ME3A LINE L1 4364 4845 -1301 304 267 48 27 chrY 4142748 4142894 -20570185 + L1ME3A LINE L1 4904 5052 -1094 355 226 39 111 chrY 4142941 4143270 -20569809 + L1ME3A LINE L1 5185 5495 -669 1910 179 5 60 chrY 4143270 4143683 -20569396 - MLT1B LTR MaLR 0 390 1 414 302 92 8 chrY 4143803 4144125 -20568954 + L1ME3A LINE L1 5525 5883 -287 3129 173 45 21 chrY 4144151 4144856 -20568223 - L1M1 LINE L1 -4096 3469 2748 6540 215 21 25 chrY 4144923 4146552 -20566527 - L1 LINE L1 -1186 4960 3337 25 31 0 0 chrY 4146552 4146584 -20566495 + AT_rich Low_complexity Low_complexity 1 32 0 301 210 0 100 chrY 4146585 4146685 -20566394 + L1MC4 LINE L1 6614 6703 -1339 405 253 0 0 chrY 4146697 4146843 -20566236 + (TA)n Simple_repeat Simple_repeat 2 147 0 297 283 0 0 chrY 4146915 4147067 -20566012 + (TA)n Simple_repeat Simple_repeat 2 153 0 277 255 0 32 chrY 4147068 4147162 -20565917 + L1MC4 LINE L1 6613 6703 -1339 1782 132 10 28 chrY 4147165 4147453 -20565626 - AluSx SINE Alu -29 283 1 2706 242 39 18 chrY 4147453 4148299 -20564780 - L1 LINE L1 -2801 3345 2482 11922 184 29 47 chrY 4148328 4148956 -20564123 + L1P LINE L1 2386 3024 -3122 1845 148 7 16 chrY 4148956 4149260 -20563819 + AluSx SINE Alu 6 306 -6 11922 184 29 47 chrY 4149260 4151553 -20561526 + L1P LINE L1 3024 5253 -893 6937 59 5 2 chrY 4151553 4152450 -20560629 + L1PA7 LINE L1 5254 6152 -2 3022 269 28 22 chrY 4152463 4152931 -20560148 - L1PBb LINE L1 -3654 2549 2085 1737 248 41 5 chrY 4152931 4153342 -20559737 + MSTB LTR MaLR 1 426 0 3022 269 28 22 chrY 4153342 4154090 -20558989 - L1PBb LINE L1 -4118 2085 1318 4671 105 44 31 chrY 4154114 4155215 -20557864 + MER11A LTR ERVK 1 1071 0 1231 284 50 13 chrY 4155225 4156192 -20556887 - L1PBb LINE L1 -4995 1209 347 345 366 6 6 chrY 4156310 4156482 -20556597 - L1PBb LINE L1 -5848 356 185 347 309 67 43 chrY 4156629 4156839 -20556240 - L1PBa LINE L1 -5220 1643 1429 281 448 15 8 chrY 4156894 4157287 -20555792 - L1PBa LINE L1 -6397 466 71 3940 137 15 122 chrY 4157287 4158840 -20554239 - pTR5 LTR ERV1 0 2606 1524 471 213 158 55 chrY 4159833 4160105 -20552974 - L1ME1 LINE L1 -8 6158 5859 26 30 0 0 chrY 4160127 4160160 -20552919 + AT_rich Low_complexity Low_complexity 1 33 0 26 82 0 0 chrY 4161107 4161168 -20551911 + AT_rich Low_complexity Low_complexity 1 61 0 29 0 0 0 chrY 4161381 4161410 -20551669 + AT_rich Low_complexity Low_complexity 1 29 0 2305 137 58 35 chrY 4161565 4162084 -20550995 - MLT2A2 LTR ERVL 0 554 2 8084 216 28 27 chrY 4162609 4164803 -20548276 + L1M2 LINE L1 3289 5490 -743 499 227 10 0 chrY 4164804 4164901 -20548178 + L1MCa LINE L1 407 504 -5922 1918 240 79 15 chrY 4164902 4164943 -20548136 - MLT2B3 LTR ERVL 0 554 517 320 0 25 0 chrY 4164943 4164983 -20548096 + (GA)n Simple_repeat Simple_repeat 2 42 0 1918 240 79 15 chrY 4164983 4165461 -20547618 - MLT2B3 LTR ERVL -37 517 2 7626 226 51 44 chrY 4165462 4168394 -20544685 - ERVL LTR ERVL -7 5757 2813 332 182 40 7 chrY 4168394 4168542 -20544537 + (TA)n Simple_repeat Simple_repeat 1 153 0 29 70 0 0 chrY 4168881 4168938 -20544141 + AT_rich Low_complexity Low_complexity 1 57 0 23 0 0 0 chrY 4169640 4169663 -20543416 + AT_rich Low_complexity Low_complexity 1 23 0 21 57 0 0 chrY 4169684 4169719 -20543360 + AT_rich Low_complexity Low_complexity 1 35 0 23 54 0 0 chrY 4169919 4169956 -20543123 + AT_rich Low_complexity Low_complexity 1 37 0 465 315 83 0 chrY 4169977 4170158 -20542921 - MIR SINE MIR -18 244 49 532 359 86 10 chrY 4170226 4170794 -20542285 - L2 LINE L2 -60 3253 2636 388 318 183 8 chrY 4170801 4171053 -20542026 - L2 LINE L2 -900 2414 2119 261 0 0 0 chrY 4171300 4171329 -20541750 + (TG)n Simple_repeat Simple_repeat 2 30 0 184 170 38 0 chrY 4171695 4171748 -20541331 + (TA)n Simple_repeat Simple_repeat 2 56 0 291 159 14 29 chrY 4171809 4171878 -20541201 - L1PA16 LINE L1 -1 7603 7536 12132 242 35 22 chrY 4171879 4175536 -20537543 - L1PA16 LINE L1 -105 7499 3750 2500 146 26 5 chrY 4175536 4175955 -20537124 + MSTA LTR MaLR 1 428 0 12132 242 35 22 chrY 4175955 4177509 -20535570 - L1PA16 LINE L1 -3854 3750 2217 276 284 0 0 chrY 4177776 4177857 -20535222 - L1PA16 LINE L1 -5398 2183 2103 698 346 59 41 chrY 4177974 4178563 -20534516 - L1PA16 LINE L1 -6187 1387 788 424 325 102 35 chrY 4178589 4178903 -20534176 - L2 LINE L2 -1812 1502 1168 524 348 100 58 chrY 4178970 4179503 -20533576 - L2 LINE L2 -2509 805 243 318 98 0 0 chrY 4179503 4179554 -20533525 + (TG)n Simple_repeat Simple_repeat 1 51 0 524 348 100 58 chrY 4179554 4179609 -20533470 - L2 LINE L2 -3071 243 192 249 327 10 48 chrY 4179806 4179910 -20533169 + MER5A DNA MER1_type 90 189 0 315 141 70 14 chrY 4179940 4180011 -20533068 + L1MCa LINE L1 1990 2064 -4362 * 331 306 10 0 chrY 4179965 4180063 -20533016 - L1MC4 LINE L1 -1340 6702 6604 27 0 0 0 chrY 4180155 4180182 -20532897 + AT_rich Low_complexity Low_complexity 1 27 0 442 281 73 37 chrY 4180502 4180748 -20532331 - MIR SINE MIR -3 259 5 30 27 0 0 chrY 4181440 4181477 -20531602 + AT_rich Low_complexity Low_complexity 1 37 0 1485 217 0 11 chrY 4182007 4182305 -20530774 - AluJo SINE Alu 0 307 13 632 241 88 72 chrY 4183357 4183800 -20529279 - L1MC4 LINE L1 -130 7912 7357 484 258 7 13 chrY 4184126 4184277 -20528802 + L1PBa LINE L1 43 192 -6671 25 65 0 0 chrY 4184588 4184634 -20528445 + AT_rich Low_complexity Low_complexity 1 46 0 24 53 0 0 chrY 4184818 4184856 -20528223 + AT_rich Low_complexity Low_complexity 1 38 0 3645 186 33 12 chrY 4185011 4185763 -20527316 - L1MB1 LINE L1 0 5992 5225 5073 230 49 19 chrY 4186231 4186936 -20526143 - L1MB1 LINE L1 -1188 4782 4099 2020 100 4 7 chrY 4186936 4187235 -20525844 + AluSc SINE Alu 1 298 0 5073 230 49 19 chrY 4187235 4187948 -20525131 - L1MB1 LINE L1 -1871 4099 3321 988 327 22 58 chrY 4188044 4188545 -20524534 - L1MB1 LINE L1 -5406 485 3 3018 181 34 47 chrY 4188747 4189447 -20523632 - LTR8 LTR ERV1 0 691 1 25 83 0 0 chrY 4190273 4190333 -20522746 + AT_rich Low_complexity Low_complexity 1 60 0 328 271 177 44 chrY 4190623 4190805 -20522274 - MLT1J LTR MaLR -89 526 238 447 331 54 29 chrY 4191122 4191364 -20521715 - MIR SINE MIR -12 250 3 1704 304 30 18 chrY 4191550 4191652 -20521427 - MLT1H1 LTR MaLR 0 555 456 1508 245 58 36 chrY 4191652 4192183 -20520896 - MER67A LTR ERV1 0 543 1 1704 304 30 18 chrY 4192183 4192623 -20520456 - MLT1H1 LTR MaLR -99 456 7 250 191 12 36 chrY 4192927 4193011 -20520068 + (TTATA)n Simple_repeat Simple_repeat 4 85 0 198 0 0 0 chrY 4194478 4194500 -20518579 + (T)n Simple_repeat Simple_repeat 1 22 0 1375 337 65 27 chrY 4195270 4196086 -20516993 + ERVL LTR ERVL 3645 4491 -1273 896 335 46 27 chrY 4196252 4196898 -20516181 + ERVL LTR ERVL 4681 5333 -321 1711 303 30 10 chrY 4197083 4197591 -20515488 + LTR33 LTR ERVL 3 520 -1 12147 74 8 1 chrY 4197906 4200347 -20512732 + L1PA6 LINE L1 3725 6176 0 213 39 0 0 chrY 4201772 4201798 -20511281 + (TTTTG)n Simple_repeat Simple_repeat 4 29 0 206 229 21 21 chrY 4202804 4202852 -20510227 + L2 LINE L2 2734 2781 -533 297 0 0 0 chrY 4202904 4202937 -20510142 + (TC)n Simple_repeat Simple_repeat 1 33 0 270 0 0 0 chrY 4202936 4202966 -20510113 + (CA)n Simple_repeat Simple_repeat 1 30 0 * 201 94 0 0 chrY 4203055 4203087 -20509992 + (TG)n Simple_repeat Simple_repeat 2 33 0 444 67 0 0 chrY 4203096 4203156 -20509923 + (GGA)n Simple_repeat Simple_repeat 1 60 0 417 312 7 35 chrY 4203261 4203402 -20509677 - MIR SINE MIR -99 163 27 219 114 0 0 chrY 4204371 4204406 -20508673 + (TG)n Simple_repeat Simple_repeat 2 36 0 252 0 0 0 chrY 4205032 4205060 -20508019 + (A)n Simple_repeat Simple_repeat 1 28 0 21 0 0 0 chrY 4205688 4205709 -20507370 + AT_rich Low_complexity Low_complexity 1 21 0 365 304 8 8 chrY 4207174 4207299 -20505780 - L1ME1 LINE L1 -21 6145 6021 274 390 43 0 chrY 4207401 4207542 -20505537 + L2 LINE L2 1061 1207 -2107 23 0 0 0 chrY 4208927 4208950 -20504129 + AT_rich Low_complexity Low_complexity 1 23 0 1811 123 0 0 chrY 4210220 4210480 -20502599 - MER4D LTR ERV1 -2 870 611 1553 175 11 15 chrY 4210480 4210754 -20502325 - AluJb SINE Alu -39 273 1 269 297 28 28 chrY 4210769 4210914 -20502165 - L1ME LINE L1 -4598 1663 1519 377 289 69 19 chrY 4210933 4211092 -20501987 - L1ME LINE L1 -4670 1410 1244 612 249 92 59 chrY 4211124 4211462 -20501617 - L1ME LINE L1 -4817 1263 880 315 314 114 0 chrY 4211487 4211627 -20501452 - L1ME LINE L1 -5379 691 536 988 349 52 9 chrY 4211632 4211772 -20501307 - L1ME LINE L1 -5580 490 358 2002 82 86 0 chrY 4211772 4212051 -20501028 - AluSq SINE Alu -10 303 1 988 349 52 9 chrY 4212051 4212369 -20500710 - L1ME LINE L1 -5712 358 12 236 284 78 78 chrY 4212523 4212625 -20500454 + L3 LINE CR1 1329 1430 -147 185 265 20 0 chrY 4212646 4212695 -20500384 - L2 LINE L2 -6 3266 3217 229 130 0 37 chrY 4213210 4213264 -20499815 - L1MC4 LINE L1 -1339 6703 6652 21 36 0 0 chrY 4213742 4213770 -20499309 + AT_rich Low_complexity Low_complexity 1 28 0 5771 178 8 2 chrY 4214170 4216017 -20497062 - L1PB1 LINE L1 0 6867 5012 2664 201 42 0 chrY 4216015 4216537 -20496542 - L1PB1 LINE L1 -6188 675 132 * 21 36 0 0 chrY 4216560 4216588 -20496491 + AT_rich Low_complexity Low_complexity 1 28 0 1753 151 3 41 chrY 4216651 4216969 -20496110 - AluJo SINE Alu -6 306 1 836 189 13 6 chrY 4217287 4217446 -20495633 + MLT1E2 LTR MaLR 1 160 -466 1140 254 16 26 chrY 4217449 4217756 -20495323 + MLT1E2 LTR MaLR 319 622 -4 24 53 0 0 chrY 4218185 4218223 -20494856 + AT_rich Low_complexity Low_complexity 1 38 0 21 36 0 0 chrY 4219695 4219723 -20493356 + AT_rich Low_complexity Low_complexity 1 28 0 28 48 0 0 chrY 4219902 4219944 -20493135 + AT_rich Low_complexity Low_complexity 1 42 0 774 271 75 18 chrY 4221534 4221814 -20491265 - L2 LINE L2 -22 3291 2996 211 203 89 51 chrY 4222135 4222205 -20490874 - MIR3 SINE MIR -34 174 99 384 22 0 0 chrY 4222205 4222250 -20490829 + (TG)n Simple_repeat Simple_repeat 1 45 0 657 100 0 0 chrY 4222563 4222663 -20490416 - L1MA1 LINE L1 0 6302 6203 1642 228 57 76 chrY 4222796 4223424 -20489655 + MLT1E2 LTR MaLR 11 626 0 1726 126 11 0 chrY 4224013 4224291 -20488788 - L1PB1 LINE L1 -5 6146 5866 207 0 0 0 chrY 4224291 4224314 -20488765 + (AATAG)n Simple_repeat Simple_repeat 4 26 0 10989 220 33 30 chrY 4224326 4224621 -20488458 - L1P3 LINE L1 -2610 3851 3558 8482 47 2 0 chrY 4224621 4225585 -20487494 + LTR5 LTR ERVK 1 966 -3 10989 220 33 30 chrY 4225585 4227836 -20485243 - L1P3 LINE L1 -2903 3558 1287 189 0 0 0 chrY 4227836 4227857 -20485222 + (TTG)n Simple_repeat Simple_repeat 1 21 0 10989 220 33 30 chrY 4227857 4229126 -20483953 - L1P3 LINE L1 -5174 1287 24 1436 97 0 0 chrY 4229130 4229326 -20483753 - L1PA7 LINE L1 0 6154 5959 26772 131 15 28 chrY 4229326 4234812 -20478267 - L1P3 LINE L1 -910 5551 10 890 302 13 10 chrY 4236530 4236841 -20476238 - MLT1J2 LTR MaLR -124 326 15 588 98 43 11 chrY 4236921 4237013 -20476066 - THE1B LTR MaLR -13 351 257 1367 204 8 8 chrY 4237946 4238191 -20474888 - AluJb SINE Alu -30 282 37 1819 181 17 3 chrY 4238191 4238489 -20474590 - AluSx SINE Alu -2 310 9 1899 121 0 8 chrY 4238873 4239138 -20473941 - AluSg SINE Alu -13 297 35 1498 183 61 4 chrY 4239223 4239485 -20473594 + AluSx SINE Alu 21 297 -15 581 231 49 0 chrY 4239487 4239630 -20473449 + Tigger2 DNA MER2_type 2566 2715 -3 1447 221 58 25 chrY 4239644 4240129 -20472950 + L1MB4 LINE L1 5679 6179 -1 1000 224 39 39 chrY 4240318 4240653 -20472426 - L1MB5 LINE L1 0 6174 5840 4716 188 35 8 chrY 4240669 4241650 -20471429 - L1MC1 LINE L1 -1 6332 5326 2092 119 0 10 chrY 4241652 4241946 -20471133 - AluSg SINE Alu -14 296 6 765 182 98 0 chrY 4241951 4242094 -20470985 - FRAM SINE Alu -5 161 5 405 213 103 13 chrY 4242094 4242249 -20470830 - L1MB5 LINE L1 -344 5830 5662 1932 147 0 7 chrY 4242251 4242573 -20470506 + AluSg SINE Alu 1 310 0 1072 268 77 20 chrY 4242639 4243399 -20469680 - L1MB5 LINE L1 -686 5648 4817 21 0 0 0 chrY 4243601 4243622 -20469457 + AT_rich Low_complexity Low_complexity 1 21 0 198 0 0 0 chrY 4244706 4244728 -20468351 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 37121 68 2 1 chrY 4244728 4250613 -20462466 - L1PA5 LINE L1 -11 6143 254 911 199 127 4 chrY 4250609 4250876 -20462203 - L1MB2 LINE L1 -106 6065 5766 * 2048 110 119 3 chrY 4250882 4251218 -20461861 - MER51B LTR ERV1 -2 375 1 6973 145 53 26 chrY 4251222 4252285 -20460794 - MER51B-int LTR ERV1 -2 7814 6781 2260 92 0 23 chrY 4252285 4252588 -20460491 - AluY SINE Alu -11 300 5 6973 145 53 26 chrY 4252588 4253505 -20459574 - MER51B-int LTR ERV1 -1035 6781 5551 1591 144 89 0 chrY 4253505 4253775 -20459304 - AluSg1 SINE Alu -15 294 1 6973 145 53 26 chrY 4253775 4253925 -20459154 - MER51B-int LTR ERV1 -2265 5551 5407 1704 131 20 9 chrY 4253902 4254299 -20458780 - MER51-int LTR ERV1 -2555 2662 2217 * 1640 150 73 34 chrY 4254311 4254748 -20458331 - MER51-int LTR ERV1 -2774 3172 1487 7071 125 77 15 chrY 4254751 4255477 -20457602 - MER51-int LTR ERV1 -4506 3310 2631 1913 183 93 30 chrY 4255477 4255937 -20457142 + LTR2B LTR ERV1 1 489 -1 7071 125 77 15 chrY 4255937 4256626 -20456453 - MER51-int LTR ERV1 -5185 2631 1807 607 166 50 68 chrY 4256627 4256826 -20456253 - MER4A LTR ERV1 -130 534 281 1035 152 25 0 chrY 4256883 4257081 -20455998 - MER51-int LTR ERV1 -6982 1138 936 1070 157 5 0 chrY 4257084 4257269 -20455810 - MER51-int LTR ERV1 -6593 1223 1038 2889 178 45 13 chrY 4257274 4257874 -20455205 - MER51-int LTR ERV1 -7022 794 176 320 317 4 8 chrY 4258898 4259040 -20454039 + GA-rich Low_complexity Low_complexity 1 239 0 3339 113 24 13 chrY 4259050 4259671 -20453408 + BaEV-int LTR ERV1 1919 2546 -4350 3621 288 46 42 chrY 4259847 4261544 -20451535 + BaEV-int LTR ERV1 4362 6064 -585 2808 83 21 3 chrY 4261794 4262309 -20450770 + LTR10C LTR ERV1 1 591 0 1133 81 5 48 chrY 4262309 4262495 -20450584 - MER51B-int LTR ERV1 -7638 178 1 2181 124 58 22 chrY 4262495 4262859 -20450220 - MER51B LTR ERV1 0 377 1 301 147 80 27 chrY 4262861 4262936 -20450143 - L1M3 LINE L1 -420 5763 5685 21 0 0 0 chrY 4263049 4263070 -20450009 + AT_rich Low_complexity Low_complexity 1 21 0 370 291 102 16 chrY 4265257 4265384 -20447695 - L2 LINE L2 -14 3299 3162 663 227 69 66 chrY 4266049 4266189 -20446890 - L1M4 LINE L1 -2444 3702 3564 1935 162 0 0 chrY 4266189 4266486 -20446593 - AluSc SINE Alu -11 298 2 663 227 69 66 chrY 4266486 4266662 -20446417 - L1M4 LINE L1 -2582 3564 3385 500 241 76 19 chrY 4266679 4266837 -20446242 - MER58A DNA MER1_type -16 208 42 817 275 83 33 chrY 4266912 4267145 -20445934 - L1M4 LINE L1 -2806 3340 3120 1083 279 49 14 chrY 4267145 4267572 -20445507 - LTR47B LTR ERVL -1 442 1 817 275 83 33 chrY 4267572 4267938 -20445141 - L1M4 LINE L1 -3026 3120 2711 277 244 13 0 chrY 4268135 4268213 -20444866 - MER116 DNA Mariner -1 79 1 617 215 7 14 chrY 4269144 4269312 -20443767 + L1MB3 LINE L1 5930 6095 -88 27 29 0 0 chrY 4269777 4269811 -20443268 + AT_rich Low_complexity Low_complexity 1 34 0 21 0 0 0 chrY 4270620 4270641 -20442438 + AT_rich Low_complexity Low_complexity 1 21 0 6596 80 0 4 chrY 4270643 4272356 -20440723 - L1PA7 LINE L1 -3 6151 4440 6399 209 37 20 chrY 4272343 4273096 -20439983 - L1P LINE L1 -2521 3625 2887 2040 141 3 0 chrY 4273096 4273402 -20439677 - AluSc SINE Alu -2 307 1 6399 209 37 20 chrY 4273402 4274198 -20438881 - L1P LINE L1 -3259 2887 2049 483 231 0 60 chrY 4274372 4274489 -20438590 + FRAM SINE Alu 48 157 -19 1689 206 16 32 chrY 4274510 4274883 -20438196 - Tigger2 DNA MER2_type -1987 731 365 1482 219 13 3 chrY 4274942 4275244 -20437835 - AluJo SINE Alu -1 311 7 1293 196 34 44 chrY 4275250 4275633 -20437446 - Tigger2 DNA MER2_type -2338 380 2 2883 227 36 46 chrY 4276441 4277512 -20435567 - L1MA6 LINE L1 0 6300 5289 217 184 20 0 chrY 4277663 4277712 -20435367 + (TTTA)n Simple_repeat Simple_repeat 3 52 0 463 228 10 18 chrY 4277984 4278149 -20434930 - L1M3 LINE L1 -646 5534 5374 400 265 17 2 chrY 4278311 4278433 -20434646 + MER5A DNA MER1_type 3 138 -51 238 153 38 76 chrY 4278741 4278898 -20434181 + (TATAA)n Simple_repeat Simple_repeat 4 154 0 * 365 128 50 67 chrY 4278810 4278990 -20434089 + (TTATA)n Simple_repeat Simple_repeat 3 179 0 339 186 43 37 chrY 4279002 4279163 -20433916 + (TATAA)n Simple_repeat Simple_repeat 3 164 0 30 0 0 0 chrY 4279189 4279219 -20433860 + AT_rich Low_complexity Low_complexity 1 30 0 337 214 52 23 chrY 4279219 4279392 -20433687 + (TATAA)n Simple_repeat Simple_repeat 2 179 0 269 199 30 23 chrY 4279459 4279590 -20433489 + (TTATA)n Simple_repeat Simple_repeat 3 134 0 40 37 0 0 chrY 4279798 4279852 -20433227 + AT_rich Low_complexity Low_complexity 1 54 0 950 230 19 5 chrY 4279992 4280201 -20432878 + AluJo SINE Alu 11 222 -90 342 281 61 0 chrY 4280202 4280284 -20432795 + AluJo SINE Alu 89 175 -127 946 246 11 8 chrY 4280287 4280547 -20432532 + AluJo SINE Alu 44 304 -8 327 291 101 7 chrY 4280557 4280705 -20432374 + L1M4 LINE L1 5 166 -6376 752 289 62 0 chrY 4280789 4281000 -20432079 - MER58A DNA MER1_type 0 224 1 643 215 0 15 chrY 4281063 4281198 -20431881 - FLAM_C SINE Alu 0 143 11 288 271 0 12 chrY 4281892 4281977 -20431102 - L1M4 LINE L1 -6376 166 83 2077 133 0 7 chrY 4282157 4282458 -20430621 - AluSq SINE Alu -14 299 1 1425 212 0 25 chrY 4282642 4282958 -20430121 - AluJo SINE Alu -2 310 3 674 276 109 0 chrY 4284148 4284340 -20428739 - MER20 DNA MER1_type -6 213 1 30 0 0 0 chrY 4284369 4284399 -20428680 + AT_rich Low_complexity Low_complexity 1 30 0 276 270 87 8 chrY 4284658 4284784 -20428295 - L1ME4a LINE L1 -19 6102 5967 182 309 36 0 chrY 4284923 4284978 -20428101 - L2 LINE L2 -22 3250 3194 350 245 167 52 chrY 4286566 4286758 -20426321 - MER41C LTR ERV1 -340 214 1 1372 254 17 17 chrY 4286805 4287164 -20425915 - MLT1A1 LTR MaLR -6 359 1 813 224 49 2 chrY 4287503 4287697 -20425382 + MER20 DNA MER1_type 1 219 0 642 236 10 51 chrY 4287969 4288164 -20424915 - MER5A DNA MER1_type -2 187 1 21 36 0 0 chrY 4289180 4289208 -20423871 + AT_rich Low_complexity Low_complexity 1 28 0 35379 107 14 13 chrY 4289595 4295716 -20417363 + L1PA6 LINE L1 11 6137 -17 210 129 48 0 chrY 4295719 4295781 -20417298 + (TA)n Simple_repeat Simple_repeat 2 66 0 5163 102 48 7 chrY 4295785 4296593 -20416486 + L1PA7 LINE L1 5313 6153 -1 213 167 24 0 chrY 4296907 4296949 -20416130 + (TA)n Simple_repeat Simple_repeat 1 43 0 1455 188 22 16 chrY 4297031 4297345 -20415734 - L1MA8 LINE L1 -22 6269 5954 556 161 21 0 chrY 4297345 4297438 -20415641 - MER66A LTR ERV1 0 478 384 11601 201 55 27 chrY 4297461 4300240 -20412839 - L1PB1 LINE L1 -5 6862 4162 2295 108 0 0 chrY 4300240 4300535 -20412544 + AluY SINE Alu 1 295 -16 11601 201 55 27 chrY 4300535 4303695 -20409384 - L1PB1 LINE L1 -2705 4162 621 882 176 28 34 chrY 4303695 4303871 -20409208 - HUERS-P3b LTR ERV1 -1382 6036 5862 233 307 117 24 chrY 4304184 4304389 -20408690 + L2 LINE L2 1758 1981 -1333 488 342 22 19 chrY 4304434 4304703 -20408376 + HERVI LTR ERV1 7378 7647 -138 2140 95 0 55 chrY 4306512 4306863 -20406216 - AluY SINE Alu 0 333 1 859 112 32 14 chrY 4307050 4307345 -20405734 + CT-rich Low_complexity Low_complexity 1 300 0 820 273 19 0 chrY 4307353 4307558 -20405521 - MER58A DNA MER1_type -12 212 4 325 304 78 17 chrY 4307658 4307773 -20405306 + FLAM_A SINE Alu 2 123 -10 2116 117 4 0 chrY 4308354 4308660 -20404419 + AluSq SINE Alu 1 307 0 344 325 42 0 chrY 4309496 4309616 -20403463 - L2 LINE L2 -3 3310 3186 312 387 43 18 chrY 4309682 4310010 -20403069 - L2 LINE L2 -1172 2142 1807 1571 234 47 20 chrY 4310439 4310884 -20402195 + MSTB2 LTR MaLR 1 457 0 277 205 55 16 chrY 4311350 4311477 -20401602 + (TA)n Simple_repeat Simple_repeat 1 132 0 22 35 0 0 chrY 4312404 4312433 -20400646 + AT_rich Low_complexity Low_complexity 1 29 0 30 27 0 0 chrY 4312469 4312506 -20400573 + AT_rich Low_complexity Low_complexity 1 37 0 2547 111 22 3 chrY 4312925 4313293 -20399786 + THE1C LTR MaLR 1 375 0 3075 164 62 29 chrY 4314005 4314633 -20398446 - MER39B LTR ERV1 -4 649 1 369 267 163 12 chrY 4314788 4314960 -20398119 + MIR SINE MIR 58 255 -7 906 188 37 0 chrY 4315119 4315337 -20397742 - L1MA7 LINE L1 -11 6280 6055 239 262 0 0 chrY 4315463 4315524 -20397555 + MIR SINE MIR 199 259 -3 1607 143 57 0 chrY 4315588 4315853 -20397226 + MER7A DNA MER2_type 1 278 -68 531 174 54 0 chrY 4315945 4316037 -20397042 + MER7A DNA MER2_type 239 335 -1 27305 140 18 57 chrY 4316581 4322987 -20390092 - L1PA7 LINE L1 -1 6153 13 327 187 88 0 chrY 4322985 4323076 -20390003 - L1M4 LINE L1 -807 5339 5241 * 267 324 43 22 chrY 4323960 4324099 -20388980 - MIR3 SINE MIR -14 194 53 31 26 0 0 chrY 4324723 4324761 -20388318 + AT_rich Low_complexity Low_complexity 1 38 0 351 282 6 61 chrY 4325967 4326130 -20386949 - MER20 DNA MER1_type -64 155 2 190 268 0 54 chrY 4326770 4326826 -20386253 - MIR SINE MIR -140 122 70 1307 92 10 10 chrY 4327953 4328159 -20384920 - L1PA8A LINE L1 -223 6223 6018 39542 44 23 1 chrY 4328166 4334181 -20378898 + L1PA3 LINE L1 8 6155 0 19546 145 15 96 chrY 4334186 4336861 -20376218 - L1PA8A LINE L1 -416 6030 3575 2086 127 105 8 chrY 4336861 4337262 -20375817 - LTR7 LTR ERV1 -10 440 1 19546 145 15 96 chrY 4337262 4339473 -20373606 - L1PA8A LINE L1 -2871 3575 1187 4880 160 25 25 chrY 4339477 4340412 -20372667 - L1PA8A LINE L1 -4736 1139 205 313 281 116 30 chrY 4342038 4342202 -20370877 - MIR SINE MIR 0 262 85 1951 157 0 37 chrY 4342363 4342688 -20370391 - AluSq SINE Alu 0 313 1 221 335 40 40 chrY 4342801 4342953 -20370126 - MIR3 SINE MIR -27 181 30 184 333 0 19 chrY 4343197 4343251 -20369828 - MIR3 SINE MIR -13 195 143 421 341 52 6 chrY 4344665 4344838 -20368241 - MIR SINE MIR -10 252 72 227 328 42 25 chrY 4345260 4345379 -20367700 - MIR SINE MIR -56 206 86 273 282 28 0 chrY 4345793 4345864 -20367215 + GA-rich Low_complexity Low_complexity 6 78 0 2158 97 0 7 chrY 4347410 4347733 -20365346 + AluSc SINE Alu 1 309 0 304 282 32 34 chrY 4347779 4347897 -20365182 + MER5A DNA MER1_type 21 128 -50 28 29 0 0 chrY 4347897 4347932 -20365147 + AT_rich Low_complexity Low_complexity 1 35 0 425 155 0 0 chrY 4347940 4348024 -20365055 - L1MA7 LINE L1 -19 6272 6189 427 245 0 0 chrY 4348024 4348126 -20364953 + L1MA5 LINE L1 5795 5896 -404 375 277 40 0 chrY 4350934 4351035 -20362044 + MIR SINE MIR 88 192 -70 272 26 0 26 chrY 4351536 4351574 -20361505 + (TTTTA)n Simple_repeat Simple_repeat 3 39 0 972 338 57 7 chrY 4352053 4352511 -20360568 + L1M2 LINE L1 1 481 -6368 2804 290 68 21 chrY 4352835 4353697 -20359382 + L1M2 LINE L1 662 1581 -5268 243 0 0 0 chrY 4353697 4353724 -20359355 + (TG)n Simple_repeat Simple_repeat 2 28 0 2804 290 68 21 chrY 4353724 4353882 -20359197 + L1M2 LINE L1 1581 1730 -5119 6782 39 1 7 chrY 4354637 4355925 -20357154 - L1P2 LINE L1 -377 5778 4501 702 242 108 0 chrY 4355929 4356160 -20356919 + L1PA15 LINE L1 2584 2839 -4010 5040 122 2 1 chrY 4356162 4356996 -20356083 - L1P LINE L1 -2396 3750 2916 10432 104 8 0 chrY 4356996 4359334 -20353745 + L1PA7 LINE L1 3809 6153 -1 489 157 172 8 chrY 4359639 4359773 -20353306 + MER53 DNA DNA 1 156 -33 2483 87 55 11 chrY 4359786 4360200 -20352879 + L1PA7 LINE L1 5752 6154 0 1174 267 8 3 chrY 4360204 4360560 -20352519 + L1PA15 LINE L1 2832 3189 -3660 * 3880 209 15 25 chrY 4360553 4360930 -20352149 + L1PA15 LINE L1 5931 6310 -558 2212 89 14 0 chrY 4360930 4361210 -20351869 + AluY SINE Alu 1 284 -27 3880 209 15 25 chrY 4361210 4361780 -20351299 + L1PA15 LINE L1 6310 6868 0 994 283 101 42 chrY 4361771 4362123 -20350956 + L1M4c LINE L1 820 1150 -5234 * 1273 272 3 3 chrY 4362123 4362424 -20350655 + AluJo SINE Alu 1 301 -11 994 283 101 42 chrY 4362424 4363037 -20350042 + L1M4c LINE L1 1150 1842 -4542 360 260 65 53 chrY 4363054 4363223 -20349856 + L1M4c LINE L1 1965 2135 -4249 4394 132 53 12 chrY 4363256 4364062 -20349017 - L1PA8 LINE L1 -1 6171 5333 2965 88 13 119 chrY 4364062 4364320 -20348759 + HUERS-P1 LTR ERV1 3649 3933 -2330 2028 160 7 0 chrY 4364320 4364626 -20348453 + AluSx SINE Alu 1 308 -4 2965 88 13 119 chrY 4364626 4364660 -20348419 + HUERS-P1 LTR ERV1 3933 3969 -2294 1866 174 3 0 chrY 4364660 4364959 -20348120 + AluSg SINE Alu 6 305 -5 2965 88 13 119 chrY 4364959 4365232 -20347847 + HUERS-P1 LTR ERV1 3969 4148 -2115 2120 137 0 0 chrY 4365232 4365525 -20347554 + AluSg SINE Alu 1 293 -17 2965 88 13 119 chrY 4365525 4365571 -20347508 + HUERS-P1 LTR ERV1 4148 4197 -2066 771 239 0 0 chrY 4365574 4365729 -20347350 + AluJb SINE Alu 140 294 -18 250 261 45 3 chrY 4365742 4365866 -20347213 - MLT1E LTR MaLR -216 410 277 442 244 114 0 chrY 4365881 4366004 -20347075 - MLT1E LTR MaLR -434 159 23 1598 146 4 0 chrY 4366559 4366805 -20346274 + HERVS71 LTR ERV1 2692 2938 -6040 * 20755 183 17 4 chrY 4366802 4366828 -20346251 + HERVS71 LTR ERV1 5174 5198 -3780 3378 87 29 16 chrY 4366828 4367312 -20345767 + LTR2B LTR ERV1 1 490 0 20755 183 17 4 chrY 4367312 4370973 -20342106 + HERVS71 LTR ERV1 5198 8909 -69 2046 115 37 21 chrY 4370973 4371319 -20341760 + LTR6A LTR ERV1 1 316 -248 4397 65 7 0 chrY 4371319 4371935 -20341144 - L1P LINE L1 -1324 4822 4203 1148 203 0 5 chrY 4372288 4372485 -20340594 + AluJo SINE Alu 3 198 -114 438 175 0 12 chrY 4373226 4373306 -20339773 - AluS SINE Alu -225 87 9 1430 174 48 45 chrY 4373318 4373507 -20339572 - AluJo SINE Alu 0 312 120 2186 142 0 0 chrY 4373507 4373817 -20339262 - AluSx SINE Alu -2 310 1 1430 174 48 45 chrY 4373817 4373938 -20339141 - AluJo SINE Alu -192 120 1 1674 222 109 36 chrY 4373986 4374455 -20338624 - MLT2B1 LTR ERVL -15 505 3 616 198 9 0 chrY 4374457 4374573 -20338506 + MLT1D LTR MaLR 389 505 0 292 158 13 13 chrY 4374910 4374986 -20338093 - MER96B DNA MER1_type? -246 171 96 2121 94 3 26 chrY 4375176 4375485 -20337594 + AluSp SINE Alu 1 302 -11 1308 128 15 5 chrY 4375502 4375705 -20337374 + AluSx SINE Alu 6 210 -102 342 120 0 0 chrY 4375705 4375755 -20337324 + LTR22 LTR ERVK 1 50 -530 2821 182 19 39 chrY 4375755 4376343 -20336736 + LTR22 LTR ERVK 5 580 0 725 150 17 0 chrY 4376360 4376480 -20336599 + AluSx SINE Alu 189 310 -2 2282 83 0 0 chrY 4376577 4376867 -20336212 - AluY SINE Alu -13 298 9 327 145 16 0 chrY 4377211 4377273 -20335806 + MER96B DNA MER1_type? 307 369 -48 2737 92 102 0 chrY 4377340 4377743 -20335336 - MLT2A1 LTR ERVL 0 444 1 4084 73 60 0 chrY 4377743 4378291 -20334788 - HERVL-A1 LTR ERVL 0 5654 5074 1299 150 0 61 chrY 4378291 4378450 -20334629 - AluSx SINE Alu -20 292 152 1981 138 0 3 chrY 4378450 4378748 -20334331 - AluSq SINE Alu -16 297 1 1299 150 0 61 chrY 4378748 4378834 -20334245 - AluSx SINE Alu -160 152 62 17912 94 5 2 chrY 4378834 4381162 -20331917 - HERVL LTR ERVL -566 5088 2754 768 129 26 13 chrY 4381162 4381317 -20331762 + CT-rich Low_complexity Low_complexity 3 159 0 2217 104 0 0 chrY 4381319 4381626 -20331453 - AluY SINE Alu -4 307 1 1881 176 30 30 chrY 4381645 4382008 -20331071 + THE1B LTR MaLR 2 364 0 322 271 0 62 chrY 4382056 4382152 -20330927 - L1MC4 LINE L1 -1339 6703 6614 220 138 0 52 chrY 4382152 4382210 -20330869 + (CATATA)n Simple_repeat Simple_repeat 6 60 0 446 232 32 32 chrY 4382230 4382355 -20330724 - FRAM SINE Alu -46 130 6 284 268 31 10 chrY 4382360 4382457 -20330622 - L1M4 LINE L1 -874 5272 5174 1339 145 21 21 chrY 4382491 4382733 -20330346 - AluSg SINE Alu -10 300 59 702 200 72 90 chrY 4382761 4382814 -20330265 - L1M4 LINE L1 -1014 5132 5080 1407 161 26 71 chrY 4382814 4383124 -20329955 + AluSq SINE Alu 1 296 -17 702 200 72 90 chrY 4383124 4383360 -20329719 - L1M4 LINE L1 -1066 5080 4848 715 221 221 5 chrY 4383364 4383572 -20329507 + AluJb SINE Alu 5 257 -55 1719 145 39 0 chrY 4383592 4383874 -20329205 - AluSx SINE Alu -19 293 1 1901 138 0 0 chrY 4383920 4384217 -20328862 + AluSx SINE Alu 15 311 -1 2029 127 3 0 chrY 4388281 4388588 -20324491 + AluSx SINE Alu 1 308 -4 264 265 118 0 chrY 4388715 4388817 -20324262 - L2 LINE L2 -5 3308 3195 216 330 110 9 chrY 4389296 4389405 -20323674 + MIR3 SINE MIR 66 185 -23 183 186 0 0 chrY 4389524 4389567 -20323512 + (TATATG)n Simple_repeat Simple_repeat 4 46 0 384 216 191 56 chrY 4389636 4389798 -20323281 - MER3 DNA MER1_type -17 192 9 1105 236 109 11 chrY 4389848 4390123 -20322956 + AluJo SINE Alu 1 302 0 1722 167 0 13 chrY 4390142 4390447 -20322632 + AluSx SINE Alu 3 303 -9 249 312 12 4 chrY 4390690 4390777 -20322302 + MIR SINE MIR 60 144 -64 612 124 21 0 chrY 4392094 4392191 -20320888 + AluSc SINE Alu 206 304 -5 1460 175 11 11 chrY 4392191 4392494 -20320585 + AluSq SINE Alu 21 323 0 631 248 23 61 chrY 4392576 4392790 -20320289 + MER20 DNA MER1_type 1 206 -13 1699 185 36 15 chrY 4392818 4393148 -20319931 + MER1B DNA MER1_type 1 337 0 1133 178 23 56 chrY 4394136 4394440 -20318639 - AluJo SINE Alu -7 305 12 1939 112 0 48 chrY 4394603 4394915 -20318164 - AluSg SINE Alu -13 297 1 268 257 82 105 chrY 4394959 4395130 -20317949 - L1ME1 LINE L1 -17 6149 5983 2343 218 26 14 chrY 4395178 4395677 -20317402 + LTR10B LTR ERV1 1 505 0 2713 118 56 12 chrY 4396758 4397172 -20315907 - LTR3 LTR ERVK 0 432 1 303 140 80 0 chrY 4397579 4397629 -20315450 - AluSc SINE Alu -10 289 236 4185 111 64 107 chrY 4397629 4398492 -20314587 - LTR12 LTR ERV1 0 826 1 764 210 52 52 chrY 4398572 4398858 -20314221 - pTR5 LTR ERV1 -1410 1028 743 1682 133 0 0 chrY 4398858 4399099 -20313980 - AluSx SINE Alu -71 241 1 1989 114 10 23 chrY 4399241 4399549 -20313530 - AluY SINE Alu -7 304 1 1196 217 72 40 chrY 4399573 4399850 -20313229 - AluJo SINE Alu -14 288 3 2392 77 3 3 chrY 4400039 4400350 -20312729 + AluY SINE Alu 1 311 0 1838 133 65 30 chrY 4401030 4401149 -20311930 + THE1B LTR MaLR 14 127 -237 1864 161 3 0 chrY 4401149 4401448 -20311631 - AluSg SINE Alu -10 300 1 1838 133 65 30 chrY 4401448 4401667 -20311412 + THE1B LTR MaLR 127 364 0 27 0 0 0 chrY 4401942 4401969 -20311110 + AT_rich Low_complexity Low_complexity 1 27 0 1683 166 11 0 chrY 4402319 4402633 -20310446 - AluSg SINE Alu 0 317 1 1730 179 7 0 chrY 4402669 4402960 -20310119 - AluSg SINE Alu -17 293 1 1590 162 20 20 chrY 4402960 4403257 -20309822 - AluSq SINE Alu -16 297 1 3317 198 130 28 chrY 4404080 4405458 -20307621 - MER52A LTR ERV1 0 1755 1 236 222 0 37 chrY 4406194 4406248 -20306831 + AluSg/x SINE Alu 116 167 -133 3734 94 322 0 chrY 4406248 4406873 -20306206 + LTR12 LTR ERV1 1 826 0 1715 137 7 28 chrY 4406873 4407158 -20305921 + AluSp SINE Alu 31 309 -4 623 208 58 79 chrY 4408091 4408202 -20304877 - L1MB8 LINE L1 -12 6166 6054 1920 139 3 3 chrY 4408202 4408505 -20304574 - AluSx SINE Alu -9 303 1 623 208 58 79 chrY 4408505 4408633 -20304446 - L1MB8 LINE L1 -124 6054 5932 1863 147 10 3 chrY 4408633 4408932 -20304147 - AluSx SINE Alu -11 301 1 263 132 0 0 chrY 4409106 4409144 -20303935 + MIR SINE MIR 118 155 -107 453 262 60 47 chrY 4409457 4409606 -20303473 + MER20 DNA MER1_type 66 216 -3 712 177 15 23 chrY 4410451 4410581 -20302498 - FLAM_C SINE Alu -10 133 5 830 189 36 106 chrY 4410586 4410887 -20302192 - AluJb SINE Alu -14 298 19 297 188 59 71 chrY 4410901 4410916 -20302163 - L1MA10 LINE L1 -82 6252 6238 893 268 70 41 chrY 4410916 4411304 -20301775 - L1ME1 LINE L1 -82 6084 5686 410 172 0 0 chrY 4411311 4411375 -20301704 - MER5A DNA MER1_type 0 189 126 885 211 119 8 chrY 4411387 4411648 -20301431 + AluJo SINE Alu 13 302 -10 401 305 21 28 chrY 4411660 4411801 -20301278 - MER5A DNA MER1_type -49 140 1 886 235 119 16 chrY 4412658 4412977 -20300102 - L1MB7 LINE L1 0 6184 5833 1661 181 7 0 chrY 4413021 4413308 -20299771 + AluSx SINE Alu 1 289 -23 1387 244 33 17 chrY 4414006 4414367 -20298712 - MLT1D LTR MaLR -2 503 137 2605 84 109 227 chrY 4414382 4415179 -20297900 - LTR12 LTR ERV1 -11 703 1 728 184 0 22 chrY 4415179 4415315 -20297764 - MLT1D LTR MaLR -371 134 2 1577 146 4 22 chrY 4415394 4415669 -20297410 - AluSp SINE Alu -2 311 42 1657 127 23 43 chrY 4415700 4416000 -20297079 + AluY SINE Alu 1 294 -17 198 0 0 0 chrY 4416074 4416096 -20296983 + (ATTG)n Simple_repeat Simple_repeat 3 24 0 576 154 0 86 chrY 4416113 4416230 -20296849 - FLAM_C SINE Alu -33 110 4 256 202 124 22 chrY 4416687 4416776 -20296303 - MLT1I LTR MaLR 0 409 312 1770 141 7 0 chrY 4416972 4417277 -20295802 + AluSq SINE Alu 1 307 0 1635 157 11 0 chrY 4417612 4417892 -20295187 + AluSx SINE Alu 6 288 -24 183 337 23 23 chrY 4418444 4418530 -20294549 - L2 LINE L2 -1526 1788 1703 670 248 7 7 chrY 4418569 4418714 -20294365 + FRAM SINE Alu 2 146 -30 815 232 11 11 chrY 4419148 4419325 -20293754 + MER8 DNA MER2_type 1 177 -62 250 178 22 0 chrY 4419511 4419556 -20293523 + MER3 DNA MER1_type 7 52 -157 212 373 32 0 chrY 4419620 4419746 -20293333 + (CACGC)n Simple_repeat Simple_repeat 4 133 0 1982 221 54 4 chrY 4420139 4420623 -20292456 - L1MB2 LINE L1 0 6171 5664 223 231 17 26 chrY 4420651 4420768 -20292311 + CT-rich Low_complexity Low_complexity 2 117 0 233 293 0 13 chrY 4420776 4420851 -20292228 + T-rich Low_complexity Low_complexity 3 76 0 402 217 18 44 chrY 4420852 4421142 -20291937 + CT-rich Low_complexity Low_complexity 1 282 0 845 238 24 24 chrY 4421142 4421394 -20291685 - AluJo SINE Alu -14 298 47 1444 136 15 133 chrY 4422056 4422195 -20290884 - MER4A LTR ERV1 0 664 585 1949 138 3 0 chrY 4422195 4422491 -20290588 - AluSx SINE Alu -15 297 1 1444 136 15 133 chrY 4422491 4422683 -20290396 - MER4A LTR ERV1 -79 585 372 462 135 112 0 chrY 4422735 4422824 -20290255 - MER4A LTR ERV1 -565 99 1 3194 136 83 14 chrY 4422825 4423414 -20289665 - MER4A-int LTR ERV1 0 6598 5969 1953 118 13 30 chrY 4424119 4424424 -20288655 + AluY SINE Alu 1 300 -11 290 62 0 62 chrY 4426481 4426529 -20286550 - L1PA5 LINE L1 -3 6151 6107 * 30780 71 8 1 chrY 4426527 4430531 -20282548 - L1P LINE L1 -2105 4041 11 1320 194 7 7 chrY 4431503 4431776 -20281303 - BaEV-int LTR ERV1 -4878 1771 1499 * 2429 233 19 2 chrY 4431770 4432289 -20280790 + BaEV-int LTR ERV1 2629 3156 -3740 4417 272 36 45 chrY 4432460 4434131 -20278948 + BaEV-int LTR ERV1 4991 6646 -3 3571 203 23 67 chrY 4434132 4435146 -20277933 - LTR5 LTR ERVK 0 969 1 10341 177 5 8 chrY 4435151 4436919 -20276160 - HERVK LTR ERVK -5 7238 5533 273 319 39 39 chrY 4436887 4437069 -20276010 - HERVK LTR ERVK -735 5181 5000 * 11552 108 4 2 chrY 4437163 4438774 -20274305 - HERVK LTR ERVK -1720 5523 3911 11508 198 15 24 chrY 4438766 4441076 -20272003 - HERVK LTR ERVK -4424 2819 531 * 1233 155 50 17 chrY 4441076 4441359 -20271720 + LTR10A LTR ERV1 290 609 0 675 291 0 0 chrY 4441372 4441547 -20271532 + BaEV-int LTR ERV1 7388 7562 -223 370 179 0 51 chrY 4441565 4441643 -20271436 - MER4A LTR ERV1 -203 461 388 1947 129 56 0 chrY 4441800 4442087 -20270992 - AluSx SINE Alu -9 303 1 207 0 0 0 chrY 4442566 4442589 -20270490 + (TC)n Simple_repeat Simple_repeat 2 24 0 2021 134 17 0 chrY 4443127 4443417 -20269662 - AluSq SINE Alu -18 295 1 365 111 0 0 chrY 4443428 4443482 -20269597 - AluSp/q SINE Alu -6 297 244 1547 227 20 6 chrY 4443617 4443969 -20269110 - MLT1B LTR MaLR -16 374 18 1188 170 65 0 chrY 4443983 4444213 -20268866 + L1MB7 LINE L1 5931 6175 -9 248 203 78 0 chrY 4445566 4445630 -20267449 - L1MB8 LINE L1 -13 6165 6097 432 227 10 0 chrY 4445848 4445945 -20267134 - L1MB1 LINE L1 -159 6009 5912 196 119 48 24 chrY 4445947 4445989 -20267090 + MIR SINE MIR 184 226 -36 203 0 0 36 chrY 4446016 4446044 -20267035 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 1814 165 0 0 chrY 4446045 4446324 -20266755 - AluSx SINE Alu -33 279 1 315 179 0 0 chrY 4447296 4447363 -20265716 + GA-rich Low_complexity Low_complexity 1 67 0 1694 182 0 0 chrY 4447365 4447640 -20265439 - AluSx SINE Alu -36 276 2 240 220 18 101 chrY 4447644 4447753 -20265326 - MER69 DNA AcHobo -264 2262 2163 242 229 0 0 chrY 4448076 4448124 -20264955 - MER69 DNA AcHobo -841 385 338 328 175 0 16 chrY 4449752 4449815 -20263264 + MER20 DNA MER1_type 112 173 -46 860 138 0 0 chrY 4449988 4450104 -20262975 - AluSp SINE Alu -197 116 1 375 41 0 0 chrY 4451635 4451684 -20261395 + (TG)n Simple_repeat Simple_repeat 1 49 0 1701 168 7 11 chrY 4451686 4451966 -20261113 - AluSx SINE Alu -33 279 1 480 235 0 20 chrY 4453152 4453254 -20259825 - MER20 DNA MER1_type -114 105 6 2043 121 4 0 chrY 4454651 4454962 -20258117 - AluSg SINE Alu 0 314 3 975 201 66 8 chrY 4455365 4455419 -20257660 - MSTA LTR MaLR -173 253 204 1828 153 39 0 chrY 4455419 4455700 -20257379 - AluSx SINE Alu -20 292 1 975 201 66 8 chrY 4455700 4455884 -20257195 - MSTA LTR MaLR -222 204 3 832 208 104 6 chrY 4456571 4456754 -20256325 - MER3 DNA MER1_type -1 208 8 239 281 144 50 chrY 4456893 4457032 -20256047 + HAL1 LINE L1 1383 1534 -973 618 290 79 105 chrY 4457184 4457905 -20255174 + HAL1 LINE L1 1618 2313 -194 1248 207 32 25 chrY 4457905 4458206 -20254873 + AluJo SINE Alu 1 303 0 618 290 79 105 chrY 4458206 4458396 -20254683 + HAL1 LINE L1 2313 2506 -1 1941 123 3 72 chrY 4458462 4458794 -20254285 + MER1B DNA MER1_type 31 339 0 517 226 19 0 chrY 4458852 4458958 -20254121 - MER20 DNA MER1_type -111 108 1 201 261 108 0 chrY 4459474 4459539 -20253540 - MIR3 SINE MIR -28 180 109 641 210 0 0 chrY 4460623 4460747 -20252332 + FLAM_C SINE Alu 2 125 -8 743 238 53 5 chrY 4461059 4461265 -20251814 + MER20 DNA MER1_type 1 216 -3 190 254 111 0 chrY 4461344 4461407 -20251672 + L2 LINE L2 2267 2336 -978 1512 197 14 24 chrY 4461974 4462269 -20250810 + AluJo SINE Alu 1 292 -20 1762 165 62 9 chrY 4462552 4462874 -20250205 - MER47A DNA MER2_type -27 339 1 966 259 139 32 chrY 4462878 4463027 -20250052 - L1MD2 LINE L1 -227 6132 6000 1846 156 6 29 chrY 4463027 4463342 -20249737 - AluSq SINE Alu -5 308 1 966 259 139 32 chrY 4463342 4463566 -20249513 - L1MD2 LINE L1 -359 6000 5719 1922 149 0 17 chrY 4464113 4464443 -20248636 + AluJb SINE Alu 5 312 0 414 209 70 31 chrY 4464613 4464707 -20248372 + MER3 DNA MER1_type 76 178 -31 1722 104 108 4 chrY 4464707 4464958 -20248121 + AluY SINE Alu 21 297 -14 414 209 70 31 chrY 4464958 4464992 -20248087 + MER3 DNA MER1_type 178 209 0 550 217 133 59 chrY 4465135 4465338 -20247741 + MER20 DNA MER1_type 2 219 0 666 214 0 0 chrY 4465890 4466007 -20247072 - FRAM SINE Alu -14 162 46 2514 78 3 0 chrY 4466280 4466589 -20246490 - AluY SINE Alu -1 310 1 837 234 155 71 chrY 4467152 4467506 -20245573 + MLT1B LTR MaLR 1 384 -6 1698 193 24 26 chrY 4467928 4468306 -20244773 - MLT1C LTR MaLR -90 377 1 639 0 0 0 chrY 4468922 4468993 -20244086 + (TTTC)n Simple_repeat Simple_repeat 2 72 0 23 0 0 0 chrY 4469102 4469125 -20243954 + AT_rich Low_complexity Low_complexity 1 23 0 1956 114 30 3 chrY 4469126 4469424 -20243655 - L1PA10 LINE L1 -6 6162 5857 872 228 185 26 chrY 4470634 4471024 -20242055 - MLT1C LTR MaLR -15 452 1 1188 118 0 12 chrY 4471317 4471487 -20241592 - AluSq SINE Alu -14 299 132 189 0 0 0 chrY 4471510 4471531 -20241548 + (T)n Simple_repeat Simple_repeat 1 21 0 2269 99 3 17 chrY 4472156 4472458 -20240621 + AluSp SINE Alu 2 299 -14 1798 173 0 7 chrY 4472866 4473161 -20239918 + AluSx SINE Alu 1 293 -19 918 177 72 29 chrY 4473561 4473770 -20239309 - MLT1F1 LTR MaLR 0 567 350 874 214 85 10 chrY 4474136 4474337 -20238742 + AluJo SINE Alu 85 300 -12 197 317 69 10 chrY 4474951 4475052 -20238027 - MIR3 SINE MIR -11 197 91 189 175 0 0 chrY 4475363 4475403 -20237676 + T-rich Low_complexity Low_complexity 5 44 0 299 170 0 19 chrY 4475461 4475514 -20237565 + CT-rich Low_complexity Low_complexity 3 54 0 311 119 0 34 chrY 4475516 4475575 -20237504 + (TCCCC)n Simple_repeat Simple_repeat 3 59 0 1897 161 0 0 chrY 4476341 4476632 -20236447 - AluSx SINE Alu -21 291 1 2390 93 0 0 chrY 4477070 4477371 -20235708 + AluY SINE Alu 1 301 -10 462 271 173 32 chrY 4477915 4478284 -20234795 - L2 LINE L2 -89 3224 2804 516 251 103 56 chrY 4478303 4478696 -20234383 - LTR15 LTR ERV1 -4 530 149 230 306 89 8 chrY 4479147 4479271 -20233808 - L2 LINE L2 -939 2375 2242 1312 218 150 8 chrY 4480157 4480538 -20232541 - L1MB4 LINE L1 -176 6004 5570 597 309 65 0 chrY 4480618 4480819 -20232260 + MER58B DNA MER1_type 15 228 -113 1434 230 3 3 chrY 4480884 4481175 -20231904 + AluJb SINE Alu 6 296 -16 23 33 0 0 chrY 4481639 4481669 -20231410 + AT_rich Low_complexity Low_complexity 1 30 0 4513 45 2 2 chrY 4482040 4482598 -20230481 + L1P LINE L1 4839 5396 -750 232 176 0 20 chrY 4483160 4483199 -20229880 + (TG)n Simple_repeat Simple_repeat 2 41 -10 1661 183 7 3 chrY 4483199 4483484 -20229595 - AluJb SINE Alu -26 286 1 232 176 0 20 chrY 4483484 4483495 -20229584 + (TG)n Simple_repeat Simple_repeat 41 51 0 211 323 31 21 chrY 4483674 4483770 -20229309 - MIR SINE MIR -143 119 23 2097 122 17 3 chrY 4485486 4485782 -20227297 + AluSp SINE Alu 1 300 -13 190 300 169 50 chrY 4486132 4486292 -20226787 + MIR SINE MIR 34 212 -50 1870 143 27 7 chrY 4486386 4486687 -20226392 + AluSq SINE Alu 1 307 -6 813 255 28 5 chrY 4486869 4487081 -20225998 - MER20 DNA MER1_type 0 219 3 388 237 86 0 chrY 4487525 4487618 -20225461 + MER58A DNA MER1_type 1 101 -6 2267 168 66 16 chrY 4487669 4488110 -20224969 + MSTA-int LTR MaLR 181 643 -1008 2057 226 20 29 chrY 4488385 4488841 -20224238 + MSTA-int LTR MaLR 650 1101 -550 1162 244 36 32 chrY 4488841 4489332 -20223747 + LTR10B LTR ERV1 1 547 0 2351 162 134 19 chrY 4489332 4489802 -20223277 + MSTA-int LTR MaLR 1097 1620 -31 2056 148 65 35 chrY 4489821 4490220 -20222859 + MSTA LTR MaLR 1 411 -17 22 0 0 0 chrY 4491222 4491244 -20221835 + AT_rich Low_complexity Low_complexity 1 22 0 665 214 0 0 chrY 4491331 4491448 -20221631 - FLAM_C SINE Alu -16 117 1 351 228 128 20 chrY 4491778 4491927 -20221152 - MLT1F LTR MaLR -109 433 269 457 158 13 0 chrY 4492000 4492076 -20221003 - MER20 DNA MER1_type -113 106 30 329 278 35 0 chrY 4492659 4492774 -20220305 + L1M4 LINE L1 5714 5832 -342 1053 139 6 0 chrY 4492774 4492932 -20220147 + AluY SINE Alu 1 159 -152 367 113 14 99 chrY 4492937 4493008 -20220071 + FLAM SINE Alu 66 117 -16 186 298 0 0 chrY 4494033 4494080 -20218999 - L2 LINE L2 -1 3271 3225 315 278 60 60 chrY 4494245 4494396 -20218683 - MLT1J LTR MaLR -38 473 323 180 300 57 29 chrY 4495707 4495777 -20217302 - L3 LINE CR1 -1495 82 11 2011 149 13 0 chrY 4496034 4496342 -20216737 + AluSx SINE Alu 1 312 0 42 36 0 0 chrY 4496838 4496894 -20216185 + AT_rich Low_complexity Low_complexity 1 56 0 1064 188 87 37 chrY 4498277 4498575 -20214504 - L1MB8 LINE L1 -281 5897 5585 544 250 100 0 chrY 4499252 4499412 -20213667 - MER58B DNA MER1_type -3 338 163 6756 94 18 88 chrY 4499469 4500511 -20212568 - L1PA8 LINE L1 0 6172 5141 1242 214 122 67 chrY 4501125 4501559 -20211520 - MLT1C LTR MaLR 0 467 10 1487 179 77 4 chrY 4502661 4502934 -20210145 - AluJb SINE Alu -19 293 1 2154 112 3 0 chrY 4503134 4503438 -20209641 + AluY SINE Alu 1 305 -6 463 149 0 0 chrY 4503438 4503512 -20209567 + AluS SINE Alu 232 305 -5 1491 229 7 0 chrY 4505004 4505305 -20207774 - AluJo SINE Alu -9 303 1 1436 283 14 13 chrY 4505383 4505872 -20207207 - L1ME1 LINE L1 -104 6062 5569 490 92 27 71 chrY 4506439 4506623 -20206456 + (TAGA)n Simple_repeat Simple_repeat 2 177 0 352 126 34 86 chrY 4506641 4506816 -20206263 + (TAGA)n Simple_repeat Simple_repeat 4 169 0 1756 219 12 17 chrY 4507396 4507807 -20205272 + L1MB3 LINE L1 5733 6141 -42 1119 215 16 12 chrY 4507807 4508058 -20205021 + AluJo SINE Alu 42 293 -19 762 290 6 72 chrY 4508341 4508528 -20204551 + L1MD1 LINE L1 5704 5863 -379 17585 97 23 0 chrY 4508528 4511690 -20201389 + L1PA7 LINE L1 2952 6153 -1 762 290 6 72 chrY 4511690 4511823 -20201256 + L1MD1 LINE L1 5863 6003 -239 627 251 121 20 chrY 4512271 4512470 -20200609 - MER20 DNA MER1_type 0 219 1 893 150 30 129 chrY 4512937 4513170 -20199909 + MER2 DNA MER2_type 1 210 -135 640 270 7 0 chrY 4513319 4513467 -20199612 - MER58A DNA MER1_type 0 158 10 788 199 31 6 chrY 4514223 4514384 -20198695 + MER20 DNA MER1_type 55 219 0 1519 238 58 0 chrY 4514996 4515341 -20197738 - MLT1A1 LTR MaLR 0 365 1 246 348 0 0 chrY 4515362 4515431 -20197648 - MIR3 SINE MIR -16 192 124 211 307 114 2 chrY 4515530 4515672 -20197407 - MIR SINE MIR -58 150 3 2102 157 0 0 chrY 4518119 4518425 -20194654 - AluSx SINE Alu -6 306 1 1398 197 7 21 chrY 4518972 4519251 -20193828 + AluJb SINE Alu 1 275 -37 414 0 0 0 chrY 4519260 4519306 -20193773 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 23 0 0 0 chrY 4519935 4519958 -20193121 + AT_rich Low_complexity Low_complexity 1 23 0 830 203 14 0 chrY 4519959 4520107 -20192972 - AluJb SINE Alu -24 288 139 1506 218 0 0 chrY 4520398 4520678 -20192401 - AluJb SINE Alu -32 280 1 2561 109 56 6 chrY 4520861 4521220 -20191859 - MER51B LTR ERV1 0 377 1 7854 162 66 54 chrY 4521220 4522869 -20190210 - MER51B-int LTR ERV1 0 7816 5837 312 29 0 0 chrY 4522869 4522903 -20190176 - L1PA3 LINE L1 -19 6136 6103 7854 162 66 54 chrY 4522903 4523477 -20189602 - MER51B-int LTR ERV1 -1979 5837 5272 2396 73 3 3 chrY 4523488 4523791 -20189288 - AluY SINE Alu -8 303 1 1593 111 80 10 chrY 4523836 4524198 -20188881 - LTR10C-int LTR ERV1 -2572 2645 2214 * 2091 155 99 73 chrY 4524180 4524616 -20188463 - LTR10C-int LTR ERV1 -3497 4040 3586 7095 67 35 3 chrY 4524616 4525669 -20187410 - L1PA6 LINE L1 -2 6152 5078 2091 155 99 73 chrY 4525669 4525755 -20187324 - LTR10C-int LTR ERV1 -3951 3586 3504 * 3599 128 86 67 chrY 4525753 4525947 -20187132 - LTR10C-int LTR ERV1 -4501 3315 3126 2205 110 13 7 chrY 4525947 4526257 -20186822 + AluSx SINE Alu 1 312 0 3599 128 86 67 chrY 4526257 4526861 -20186218 - LTR10C-int LTR ERV1 -4690 3126 2497 2649 118 22 49 chrY 4526859 4526952 -20186127 - LTR10C-int LTR ERV1 -5491 2325 2231 * 1986 131 0 3 chrY 4526952 4527243 -20185836 + AluSq SINE Alu 1 290 -23 2649 118 22 49 chrY 4527243 4527702 -20185377 - LTR10C-int LTR ERV1 -5585 2231 1788 492 165 0 128 chrY 4527702 4527835 -20185244 - MER4A LTR ERV1 -147 517 402 7883 153 47 23 chrY 4527839 4528143 -20184936 - LTR10C-int LTR ERV1 -6354 1462 1167 4761 61 0 2 chrY 4528143 4528735 -20184344 - LTR10C LTR ERV1 0 591 1 7883 153 47 23 chrY 4528735 4529858 -20183221 - LTR10C-int LTR ERV1 -6649 1167 1 1983 135 70 11 chrY 4529858 4529940 -20183139 - MER51B LTR ERV1 0 377 301 5992 80 10 18 chrY 4529940 4530726 -20182353 + LTR17 LTR ERV1 1 780 0 1983 135 70 11 chrY 4530726 4530999 -20182080 - MER51B LTR ERV1 -76 301 1 658 290 0 0 chrY 4531202 4531364 -20181715 + FRAM SINE Alu 1 162 -4 1013 228 19 0 chrY 4532118 4532333 -20180746 - MER20 DNA MER1_type 0 219 1 1709 191 73 98 chrY 4532514 4533064 -20180015 - LTR10A LTR ERV1 -61 548 13 12814 172 31 44 chrY 4533076 4537342 -20175737 - Harlequin LTR ERV1 -4 6645 719 4398 225 38 27 chrY 4537393 4538588 -20174491 - HERVI LTR ERV1 -5812 837 499 724 250 52 49 chrY 4538635 4538923 -20174156 - HERVI LTR ERV1 -6360 289 1 1903 169 88 81 chrY 4538932 4539476 -20173603 - LTR10A LTR ERV1 -61 548 1 2084 151 8 48 chrY 4540841 4541219 -20171860 + THE1B LTR MaLR 2 364 0 326 164 9 146 chrY 4541595 4541705 -20171374 + THE1A LTR MaLR 2 96 -259 * 1193 118 0 0 chrY 4541689 4541850 -20171229 - THE1B LTR MaLR -38 326 166 1805 129 11 4 chrY 4542075 4542398 -20170681 - AluSx SINE Alu 0 325 1 1309 223 3 0 chrY 4542421 4542708 -20170371 + AluJo SINE Alu 1 288 -24 1216 204 35 14 chrY 4542920 4543204 -20169875 + AluJo SINE Alu 4 293 -19 21 0 0 0 chrY 4543637 4543658 -20169421 + AT_rich Low_complexity Low_complexity 1 21 0 2218 101 0 10 chrY 4543752 4544087 -20168992 + AluSp SINE Alu 1 313 0 448 250 65 0 chrY 4544958 4545066 -20168013 - MER58A DNA MER1_type -2 222 108 1129 186 45 5 chrY 4545075 4545295 -20167784 - MLT1B LTR MaLR -12 378 150 238 281 16 31 chrY 4545320 4545384 -20167695 - MER58A DNA MER1_type -42 65 3 1358 234 7 7 chrY 4545420 4545706 -20167373 - AluJo SINE Alu -16 286 1 1593 172 11 7 chrY 4547653 4547932 -20165147 - AluSq SINE Alu -33 280 1 1088 233 5 9 chrY 4548915 4549130 -20163949 + MER58A DNA MER1_type 11 224 0 288 53 0 0 chrY 4549172 4549210 -20163869 + (TC)n Simple_repeat Simple_repeat 1 38 0 762 226 80 21 chrY 4549900 4550188 -20162891 + MER33 DNA MER1_type 20 324 0 402 214 0 0 chrY 4550402 4550472 -20162607 + AluJ/FLAM SINE Alu 2 71 -241 433 121 0 0 chrY 4550501 4550559 -20162520 + FLAM SINE Alu 69 126 -17 192 125 0 0 chrY 4550561 4550593 -20162486 + (GGATG)n Simple_repeat Simple_repeat 3 34 0 269 245 0 0 chrY 4550601 4550650 -20162429 + AluSg/x SINE Alu 133 181 -119 263 146 208 31 chrY 4551288 4551384 -20161695 - L1MB5 LINE L1 -112 6062 5950 1956 140 0 0 chrY 4551661 4551961 -20161118 - AluSx SINE Alu -12 300 1 469 302 172 26 chrY 4552312 4552356 -20160723 + L1MD2 LINE L1 5911 5947 -412 1875 147 13 0 chrY 4552356 4552663 -20160416 + AluSq SINE Alu 1 311 -2 469 302 172 26 chrY 4552663 4552996 -20160083 + L1MD2 LINE L1 5947 6343 -16 1347 201 10 30 chrY 4553620 4553923 -20159156 + AluJo SINE Alu 1 297 -15 543 285 7 0 chrY 4553924 4554068 -20159011 - MER82 DNA MER2_type -484 169 25 1754 128 10 20 chrY 4555792 4556089 -20156990 - AluSc SINE Alu 0 309 16 1011 154 44 118 chrY 4556089 4556361 -20156718 + AluJo SINE Alu 44 295 -17 1108 185 142 50 chrY 4556931 4557191 -20155888 + AluJo SINE Alu 1 284 -18 1852 181 127 0 chrY 4557262 4557633 -20155446 - MSTA LTR MaLR 0 428 11 609 261 94 47 chrY 4557653 4558055 -20155024 + L1M4c LINE L1 1116 1536 -4848 244 245 14 150 chrY 4559799 4559946 -20153133 + MER94 DNA DNA 6 132 -2 1927 92 0 51 chrY 4560021 4560333 -20152746 - AluSc SINE Alu 0 298 2 614 200 87 0 chrY 4560778 4560893 -20152186 + FLAM_C SINE Alu 1 125 -8 501 32 0 0 chrY 4560894 4560957 -20152122 + (CA)n Simple_repeat Simple_repeat 2 64 0 1259 176 69 35 chrY 4560961 4561251 -20151828 + AluJo SINE Alu 2 301 -1 1838 140 10 3 chrY 4562320 4562613 -20150466 + AluSq SINE Alu 3 297 -16 367 73 73 30 chrY 4562646 4562810 -20150269 + (TA)n Simple_repeat Simple_repeat 2 172 0 248 121 77 0 chrY 4562839 4562930 -20150149 + (TA)n Simple_repeat Simple_repeat 1 98 0 319 172 0 0 chrY 4562933 4562996 -20150083 - AluJb SINE Alu -185 117 71 712 179 8 8 chrY 4564731 4564854 -20148225 - FLAM_C SINE Alu -19 124 2 428 222 68 8 chrY 4565093 4565210 -20147869 - LTR16B LTR ERVL -26 438 315 1668 158 4 0 chrY 4565241 4565507 -20147572 + AluSx SINE Alu 1 267 -45 672 228 19 13 chrY 4566169 4566245 -20146834 + MER20 DNA MER1_type 3 77 -142 1681 211 18 0 chrY 4566245 4566586 -20146493 - MER7A DNA MER2_type -1 345 1 672 228 19 13 chrY 4566586 4566667 -20146412 + MER20 DNA MER1_type 77 161 -58 395 237 0 0 chrY 4567067 4567143 -20145936 - MER58A DNA MER1_type -30 77 2 1919 128 7 3 chrY 4567418 4567716 -20145363 - AluSq SINE Alu -14 299 1 206 174 22 0 chrY 4568349 4568395 -20144684 + CT-rich Low_complexity Low_complexity 3 49 0 1518 118 10 90 chrY 4571579 4571867 -20141212 - MER4A LTR ERV1 0 664 400 790 227 43 34 chrY 4572230 4572437 -20140642 + AluJo SINE Alu 87 295 -17 598 262 141 48 chrY 4573054 4573531 -20139548 - LTR67 LTR ERVL -8 549 29 6431 139 65 44 chrY 4573954 4575227 -20137852 + HSMAR2 DNA Mariner 1 1300 -2 1653 194 0 0 chrY 4575357 4575651 -20137428 + AluSx SINE Alu 1 294 -18 1107 183 57 57 chrY 4575811 4576074 -20137005 + Tigger3(Golem) DNA MER2_type 2762 3024 -5 595 278 142 27 chrY 4577907 4578317 -20134762 + L2 LINE L2 2840 3296 -17 1256 249 14 7 chrY 4578627 4578904 -20134175 + AluJo SINE Alu 12 290 -22 2406 79 0 3 chrY 4579296 4579599 -20133480 + AluY SINE Alu 1 302 -9 409 171 14 130 chrY 4579790 4579936 -20133143 - L1ME4a LINE L1 -2 6119 5991 1486 184 22 4 chrY 4580127 4580399 -20132680 - AluSx SINE Alu -33 279 3 1638 204 0 19 chrY 4580432 4580741 -20132338 + AluJo SINE Alu 1 303 -9 3311 199 45 10 chrY 4580841 4581528 -20131551 + MER50 LTR ERV1 1 711 -23 1672 187 171 31 chrY 4582831 4583312 -20129767 - LTR10A LTR ERV1 -61 548 1 9274 257 17 27 chrY 4583464 4585814 -20127265 + LTR10A-int LTR ERV1 4320 6647 -2 1950 191 104 48 chrY 4585815 4586334 -20126745 + LTR10A LTR ERV1 1 548 -61 1065 204 18 26 chrY 4586352 4586578 -20126501 - MER58A DNA MER1_type 0 224 1 266 250 10 48 chrY 4587155 4587259 -20125820 - MER58 DNA MER1_type -2216 204 105 1079 205 193 4 chrY 4587272 4587526 -20125553 + AluJb SINE Alu 1 302 0 196 27 54 27 chrY 4587531 4587568 -20125511 + (CAAAAA)n Simple_repeat Simple_repeat 4 41 0 226 268 127 0 chrY 4587570 4587641 -20125438 - MER58 DNA MER1_type -251 90 11 2294 75 7 13 chrY 4588707 4589015 -20124064 + AluY SINE Alu 3 308 -3 1214 122 11 0 chrY 4589024 4589212 -20123867 + AluSg/x SINE Alu 123 312 0 372 22 0 0 chrY 4591281 4591326 -20121753 + (TG)n Simple_repeat Simple_repeat 2 46 0 5711 133 155 13 chrY 4591330 4592090 -20120989 - MER11B LTR ERVK -4 1232 273 2251 91 37 0 chrY 4592090 4592386 -20120693 - AluY SINE Alu -4 307 1 5711 133 155 13 chrY 4592386 4592704 -20120375 - MER11B LTR ERVK -963 273 1 189 0 0 0 chrY 4592792 4592813 -20120266 + (TG)n Simple_repeat Simple_repeat 1 21 0 574 282 52 58 chrY 4593670 4593765 -20119314 + L2 LINE L2 2577 2671 -642 1361 254 25 8 chrY 4593765 4594124 -20118955 - MLT1A1 LTR MaLR 0 365 1 574 282 52 58 chrY 4594124 4594527 -20118552 + L2 LINE L2 2671 3063 -250 934 182 6 12 chrY 4594959 4595124 -20117955 + AluSg/x SINE Alu 135 298 -12 1808 161 22 0 chrY 4595947 4596214 -20116865 + AluSx SINE Alu 1 273 -39 207 0 0 0 chrY 4596799 4596822 -20116257 + (A)n Simple_repeat Simple_repeat 1 23 0 250 252 163 0 chrY 4597461 4597584 -20115495 - L1ME LINE L1 -394 5768 5626 1881 148 0 33 chrY 4599921 4600224 -20112855 - AluSx SINE Alu -19 293 1 2074 151 3 0 chrY 4600232 4600543 -20112536 - AluSx SINE Alu 0 312 1 555 201 63 90 chrY 4602169 4602358 -20110721 + MSTD LTR MaLR 210 393 -3 1641 151 55 24 chrY 4602697 4602988 -20110091 + AluSx SINE Alu 1 300 -12 255 251 143 54 chrY 4603082 4603508 -20109571 + L1M4 LINE L1 2598 3061 -3085 22 70 0 0 chrY 4603870 4603913 -20109166 + AT_rich Low_complexity Low_complexity 1 43 0 2097 122 3 3 chrY 4604388 4604682 -20108397 - AluSc SINE Alu -15 294 1 532 263 31 85 chrY 4604806 4604917 -20108162 - L1M4 LINE L1 -2117 4029 3913 1797 146 18 0 chrY 4604917 4605198 -20107881 - AluJb SINE Alu -19 293 8 532 263 31 85 chrY 4605198 4605379 -20107700 - L1M4 LINE L1 -2233 3913 3753 231 297 121 11 chrY 4605397 4605579 -20107500 - L1M4 LINE L1 -2468 3678 3477 * 29822 76 10 2 chrY 4605549 4610328 -20102751 - L1PA5 LINE L1 0 6154 1338 31862 59 2 3 chrY 4610331 4614306 -20098773 + L1PA3 LINE L1 1 3968 -2178 7779 37 5 0 chrY 4614306 4616029 -20097050 + L1PA3 LINE L1 4454 6180 0 1096 216 100 23 chrY 4616033 4616292 -20096787 - AluJb SINE Alu -33 279 1 1214 176 9 0 chrY 4616387 4616597 -20096482 - L1PA16 LINE L1 -9 6157 5946 207 100 0 0 chrY 4616777 4616807 -20096272 + (GA)n Simple_repeat Simple_repeat 1 30 0 1704 152 59 7 chrY 4616873 4617163 -20095916 - AluSc SINE Alu -4 305 1 2148 130 0 7 chrY 4617692 4617993 -20095086 - AluSg SINE Alu 0 310 12 198 0 0 0 chrY 4618918 4618940 -20094139 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 316 136 34 136 chrY 4618954 4618990 -20094089 + MADE1 DNA Mariner 2 40 -40 222 37 0 0 chrY 4618990 4619017 -20094062 + (TG)n Simple_repeat Simple_repeat 2 28 0 1875 143 56 0 chrY 4619018 4619284 -20093795 - AluSx SINE Alu -31 281 1 316 136 34 136 chrY 4619284 4619333 -20093746 + MADE1 DNA Mariner 39 80 0 3593 147 16 13 chrY 4619704 4620237 -20092842 + L1PA16 LINE L1 5530 6067 -99 1647 204 41 123 chrY 4620237 4620902 -20092177 + LTR9 LTR ERV1 3 612 0 3593 147 16 13 chrY 4620902 4620989 -20092090 + L1PA16 LINE L1 6067 6152 -14 1466 151 33 7 chrY 4621016 4621288 -20091791 + L1MB3 LINE L1 5895 6173 -10 717 197 0 0 chrY 4621291 4621418 -20091661 - FLAM_C SINE Alu -4 129 3 431 212 7 0 chrY 4622218 4622364 -20090715 + (TA)n Simple_repeat Simple_repeat 2 148 0 219 36 0 0 chrY 4622366 4622394 -20090685 + (GA)n Simple_repeat Simple_repeat 1 28 0 1186 162 20 10 chrY 4622394 4622598 -20090481 - AluJo SINE Alu -34 278 73 427 253 0 10 chrY 4622598 4622697 -20090382 - AluJo SINE Alu -128 184 87 1147 174 32 23 chrY 4622697 4622916 -20090163 - AluJo SINE Alu -91 221 1 2085 145 0 0 chrY 4623016 4623319 -20089760 - AluSx SINE Alu -7 305 3 1273 171 23 35 chrY 4623340 4623560 -20089519 + L1MA8 LINE L1 6018 6236 -55 2149 122 14 0 chrY 4623560 4623855 -20089224 + AluSp SINE Alu 1 299 -14 1273 171 23 35 chrY 4623855 4623891 -20089188 + L1MA8 LINE L1 6236 6271 -20 2040 138 3 0 chrY 4623907 4624190 -20088889 + AluSx SINE Alu 1 284 -28 1622 134 30 0 chrY 4624245 4624514 -20088565 - L1MA5A LINE L1 0 6297 6021 1542 161 71 29 chrY 4624884 4625135 -20087944 + MLT1A1 LTR MaLR 43 311 -54 1603 89 12 32 chrY 4625135 4625383 -20087696 + MER75B DNA T2_type 1 243 0 1542 161 71 29 chrY 4625383 4625441 -20087638 + MLT1A1 LTR MaLR 311 365 0 1781 158 3 36 chrY 4625558 4625861 -20087218 - AluSq SINE Alu -18 295 3 891 223 0 33 chrY 4626117 4626328 -20086751 + MER20 DNA MER1_type 1 204 -15 1601 159 3 76 chrY 4626573 4626746 -20086333 - AluJo SINE Alu -19 293 152 1892 172 0 3 chrY 4626746 4627037 -20086042 - AluSx SINE Alu -22 290 1 1601 159 3 76 chrY 4627037 4627178 -20085901 - AluJo SINE Alu -160 152 2 977 239 95 31 chrY 4627221 4627548 -20085531 - MLT1C LTR MaLR -8 459 112 1673 230 61 2 chrY 4627868 4628263 -20084816 + L1MB5 LINE L1 5728 6149 -25 1981 139 7 7 chrY 4628263 4628579 -20084500 + AluSx SINE Alu 3 297 -15 1673 230 61 2 chrY 4628579 4628591 -20084488 + L1MB5 LINE L1 6149 6159 -15 1526 208 0 14 chrY 4628684 4628978 -20084101 + AluJo SINE Alu 1 290 -22 2116 131 7 0 chrY 4629082 4629372 -20083707 - AluSx SINE Alu -16 296 5 2081 120 7 10 chrY 4629401 4629700 -20083379 - AluY SINE Alu -13 298 1 268 77 39 0 chrY 4629796 4629848 -20083231 + (TTA)n Simple_repeat Simple_repeat 1 54 0 43338 38 21 1 chrY 4629848 4635866 -20077213 - L1PA2 LINE L1 -13 6142 1 22 0 0 0 chrY 4635998 4636020 -20077059 + AT_rich Low_complexity Low_complexity 1 22 0 1363 236 7 7 chrY 4636289 4636565 -20076514 - AluJo SINE Alu -32 280 5 748 207 64 11 chrY 4636719 4636906 -20076173 + MLT1B LTR MaLR 1 187 -187 966 183 52 0 chrY 4636908 4637099 -20075980 - L1MB1 LINE L1 -1 6167 5967 477 122 0 0 chrY 4637107 4637181 -20075898 + (TC)n Simple_repeat Simple_repeat 1 74 0 776 207 0 0 chrY 4637204 4637344 -20075735 + MLT1B LTR MaLR 193 332 -58 1773 162 184 11 chrY 4637439 4637614 -20075465 - MSTA LTR MaLR -7 421 278 180 0 0 0 chrY 4637614 4637634 -20075445 + (GA)n Simple_repeat Simple_repeat 1 20 0 1773 162 184 11 chrY 4637634 4637817 -20075262 - MSTA LTR MaLR -150 278 1 2379 215 45 8 chrY 4638138 4638641 -20074438 + L1MB1 LINE L1 5586 6111 -78 2207 112 48 0 chrY 4638641 4638972 -20074107 + L1PB1 LINE L1 5800 6146 -5 2379 215 45 8 chrY 4638972 4638998 -20074081 + L1MB1 LINE L1 6111 6135 -54 261 227 61 0 chrY 4638998 4639064 -20074015 + L1MB1 LINE L1 6092 6161 -28 22 0 0 0 chrY 4639385 4639407 -20073672 + AT_rich Low_complexity Low_complexity 1 22 0 198 0 0 0 chrY 4640025 4640047 -20073032 + (T)n Simple_repeat Simple_repeat 1 22 0 560 205 8 33 chrY 4640135 4640535 -20072544 + CT-rich Low_complexity Low_complexity 1 390 0 1778 149 7 35 chrY 4640804 4641093 -20071986 + AluSx SINE Alu 1 281 -31 580 226 0 38 chrY 4641134 4641267 -20071812 + FLAM_C SINE Alu 1 128 -5 269 93 167 19 chrY 4641275 4641329 -20071750 + L1M3 LINE L1 5652 5713 -470 1474 193 10 49 chrY 4641342 4641648 -20071431 + AluJb SINE Alu 13 306 -6 849 237 56 40 chrY 4641655 4641989 -20071090 + L1MB5 LINE L1 5701 6037 -147 1394 108 0 0 chrY 4641997 4642183 -20070896 + AluSg/x SINE Alu 114 299 -13 341 202 71 12 chrY 4642245 4642329 -20070750 + L1MB3 LINE L1 6092 6180 -3 2320 141 68 34 chrY 4642849 4643288 -20069791 - MER50 LTR ERV1 -280 454 1 2224 121 3 0 chrY 4643292 4643605 -20069474 + MER41A LTR ERV1 1 314 -240 209 161 0 0 chrY 4644254 4644285 -20068794 + polypyrimidine Low_complexity Low_complexity 4 34 0 655 214 0 0 chrY 4644943 4645069 -20068010 + L1MB3 LINE L1 5804 5929 -254 670 152 14 58 chrY 4645072 4645210 -20067869 - LTR23 LTR ERV1 -1 436 305 1208 232 19 3 chrY 4645210 4645481 -20067598 - LTR10B LTR ERV1 0 591 310 248 269 0 0 chrY 4645500 4645552 -20067527 + LTR30 LTR ERV1 1 52 -670 1003 155 61 18 chrY 4645552 4645776 -20067303 + LTR12 LTR ERV1 60 1982 -456 284 145 87 14 chrY 4645814 4645883 -20067196 + LTR12 LTR ERV1 204 277 -437 291 165 63 90 chrY 4645883 4645994 -20067085 + LTR30 LTR ERV1 375 477 -92 589 141 0 0 chrY 4645999 4646084 -20066995 + LTR12 LTR ERV1 630 714 0 30341 133 13 11 chrY 4646104 4651525 -20061554 + HERV9 LTR ERV1 55 5568 -2831 6207 128 3 2 chrY 4651523 4652998 -20060081 + HERV9 LTR ERV1 6887 8399 0 * 252 208 0 19 chrY 4652998 4653051 -20060028 + LTR30 LTR ERV1 1 52 -670 677 178 22 144 chrY 4653051 4653321 -20059758 + LTR12 LTR ERV1 53 289 -425 259 222 0 42 chrY 4653321 4653393 -20059686 + LTR30 LTR ERV1 556 624 -98 662 155 13 1 chrY 4653393 4653510 -20059569 + LTR12 LTR ERV1 52 581 -133 505 188 97 51 chrY 4653510 4653713 -20059366 - LTR10B LTR ERV1 -287 218 1 5256 254 43 28 chrY 4653714 4655597 -20057482 - LTR10B-int LTR ERV1 -2 6647 4795 7586 72 23 12 chrY 4655597 4656556 -20056523 + LTR5 LTR ERVK 1 969 0 5256 254 43 28 chrY 4656556 4656753 -20056326 - LTR10B-int LTR ERV1 -1854 4795 2603 1721 304 58 22 chrY 4656778 4657455 -20055624 - LTR10B-int LTR ERV1 -2545 5240 4540 623 173 0 127 chrY 4657454 4657604 -20055475 - LTR10B-int LTR ERV1 -3220 3429 3299 * 5187 256 23 23 chrY 4657603 4658989 -20054090 - LTR10B-int LTR ERV1 -3768 2761 1374 449 226 148 13 chrY 4658979 4659134 -20053945 - LTR10B-int LTR ERV1 -5869 780 605 * 979 257 92 4 chrY 4659130 4659402 -20053677 - LTR10B-int LTR ERV1 -6347 302 7 1690 208 139 29 chrY 4659404 4659885 -20053194 - LTR10B LTR ERV1 0 547 14 843 212 0 0 chrY 4659891 4660037 -20053042 - AluJb SINE Alu -59 253 108 1284 185 43 18 chrY 4660047 4660328 -20052751 - LTR56 LTR ERV1 -149 296 9 250 277 24 0 chrY 4660334 4660417 -20052662 + L1MB2 LINE L1 5928 6012 -159 1416 217 23 7 chrY 4660467 4660767 -20052312 + AluJb SINE Alu 1 305 -7 604 237 8 0 chrY 4660930 4661121 -20051958 + FLAM_C SINE Alu 2 193 0 2272 148 22 3 chrY 4661188 4661545 -20051534 + THE1B LTR MaLR 1 364 0 3680 154 22 14 chrY 4661639 4662080 -20050999 + MER41B LTR ERV1 1 450 -185 1766 186 30 19 chrY 4662080 4662451 -20050628 - THE1C LTR MaLR 0 375 1 3680 154 22 14 chrY 4662451 4662639 -20050440 + MER41B LTR ERV1 450 635 0 1410 169 31 0 chrY 4663157 4663417 -20049662 + LTR26 LTR ERV1 1 268 -335 528 286 29 29 chrY 4663470 4663587 -20049492 + L1MD2 LINE L1 6077 6193 -166 1569 173 67 50 chrY 4663587 4663945 -20049134 + THE1B LTR MaLR 1 364 0 528 286 29 29 chrY 4663945 4664100 -20048979 + L1MD2 LINE L1 6192 6349 -10 2372 243 35 34 chrY 4664359 4665010 -20048069 + MER82 DNA MER2_type 1 652 -1 234 324 39 0 chrY 4665024 4665126 -20047953 + MLT1G1 LTR MaLR 25 130 -463 239 343 118 22 chrY 4665240 4665418 -20047661 + MLT1G1 LTR MaLR 305 499 -96 276 130 0 0 chrY 4665705 4665751 -20047328 + (T)n Simple_repeat Simple_repeat 1 46 0 40318 78 10 1 chrY 4665751 4671851 -20041228 - L1PA5 LINE L1 0 6154 1 23246 276 26 32 chrY 4672694 4680153 -20032926 + HERV3 LTR ERV1 1031 8734 -1 673 221 140 56 chrY 4680270 4680592 -20032487 + LTR15 LTR ERV1 127 475 -18 555 191 171 0 chrY 4680817 4680922 -20032157 + FLAM_C SINE Alu 3 125 -18 1275 239 10 16 chrY 4680934 4681248 -20031831 + AluJo SINE Alu 1 312 0 1946 149 0 4 chrY 4681349 4681625 -20031454 + AluSc SINE Alu 5 279 -30 324 48 0 0 chrY 4681625 4681667 -20031412 + (CTAA)n Simple_repeat Simple_repeat 3 44 0 1480 187 11 22 chrY 4682114 4682392 -20030687 + AluJo SINE Alu 1 275 -37 274 334 147 34 chrY 4682424 4682564 -20030515 - L2 LINE L2 0 3313 3190 1611 191 0 3 chrY 4682564 4682846 -20030233 + AluJb SINE Alu 6 286 -26 198 0 0 0 chrY 4682849 4682871 -20030208 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 274 334 147 34 chrY 4682871 4683052 -20030027 - L2 LINE L2 -124 3189 2951 218 292 34 39 chrY 4683496 4683674 -20029405 + (TATATG)n Simple_repeat Simple_repeat 3 179 0 * 363 237 52 12 chrY 4683549 4683722 -20029357 + (TA)n Simple_repeat Simple_repeat 1 180 0 360 278 34 17 chrY 4683678 4683854 -20029225 + (CATA)n Simple_repeat Simple_repeat 2 180 0 * 202 242 33 33 chrY 4683829 4683887 -20029192 + (CATATA)n Simple_repeat Simple_repeat 6 66 -30 * 1473 167 82 43 chrY 4683887 4684023 -20029056 + AluSx SINE Alu 1 130 -182 2936 0 0 0 chrY 4684023 4684333 -20028746 + AluYa5 SINE Alu 1 310 -1 1473 167 82 43 chrY 4684333 4684477 -20028602 + AluSx SINE Alu 130 292 -20 202 242 33 33 chrY 4684477 4684509 -20028570 + (CATATA)n Simple_repeat Simple_repeat 65 96 0 564 125 40 17 chrY 4684516 4684692 -20028387 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 439 278 5 48 chrY 4684809 4684996 -20028083 + (CA)n Simple_repeat Simple_repeat 2 180 0 208 355 13 20 chrY 4685050 4685202 -20027877 + (CA)n Simple_repeat Simple_repeat 1 151 0 329 89 0 0 chrY 4685212 4685257 -20027822 + AluSq SINE Alu 141 185 -118 305 283 30 18 chrY 4685260 4685426 -20027653 + (CATA)n Simple_repeat Simple_repeat 1 168 0 370 284 19 26 chrY 4685467 4685622 -20027457 + (CATA)n Simple_repeat Simple_repeat 4 157 0 1895 140 0 14 chrY 4685963 4686275 -20026804 + AluSg SINE Alu 1 308 0 786 120 9 0 chrY 4686420 4686528 -20026551 + AluSq SINE Alu 134 242 -71 1853 169 0 3 chrY 4686815 4687116 -20025963 + AluSx SINE Alu 1 300 -12 837 177 84 47 chrY 4687116 4687163 -20025916 - L1MA8 LINE L1 -23 6268 6224 1910 135 56 0 chrY 4687163 4687451 -20025628 + AluSc SINE Alu 1 304 -5 837 177 84 47 chrY 4687451 4687607 -20025472 - L1MA8 LINE L1 -67 6224 6054 1920 163 3 16 chrY 4687795 4688101 -20024978 + AluSx SINE Alu 1 302 -10 995 154 43 98 chrY 4688221 4688302 -20024777 + AluJo SINE Alu 46 130 -182 235 0 57 0 chrY 4688302 4688337 -20024742 + (TTTA)n Simple_repeat Simple_repeat 3 39 0 2034 143 0 0 chrY 4688344 4688630 -20024449 - AluSg SINE Alu -24 286 1 995 154 43 98 chrY 4688630 4688774 -20024305 + AluJo SINE Alu 136 266 -46 2227 97 17 0 chrY 4689055 4689345 -20023734 - AluY SINE Alu -16 295 1 1639 208 15 42 chrY 4689385 4689785 -20023294 + L1MC2 LINE L1 5937 6325 -19 1725 165 19 66 chrY 4689786 4690150 -20022929 + L1PB2 LINE L1 5802 6148 -3 1989 147 0 7 chrY 4690310 4690602 -20022477 + AluSx SINE Alu 1 290 -22 189 107 0 0 chrY 4690633 4690661 -20022418 + (TAA)n Simple_repeat Simple_repeat 2 29 0 1336 193 84 7 chrY 4690661 4690936 -20022143 + AluJo SINE Alu 1 296 -6 1409 129 4 43 chrY 4691274 4691506 -20021573 - AluSg/x SINE Alu -6 306 84 186 43 0 0 chrY 4691506 4691529 -20021550 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1781 170 0 7 chrY 4691569 4691875 -20021204 + AluSg SINE Alu 7 310 0 219 36 0 0 chrY 4691925 4691953 -20021126 + (CA)n Simple_repeat Simple_repeat 1 28 0 1864 156 7 17 chrY 4691959 4692248 -20020831 - AluSx SINE Alu -26 286 1 733 205 8 8 chrY 4692273 4692400 -20020679 + FLAM_C SINE Alu 1 127 -16 219 114 45 0 chrY 4692400 4692444 -20020635 + (TAA)n Simple_repeat Simple_repeat 3 48 0 585 207 51 109 chrY 4693101 4693281 -20019798 + L1MB3 LINE L1 5145 5334 -812 1687 193 3 0 chrY 4693281 4693576 -20019503 + AluSx SINE Alu 1 296 -16 1896 159 10 7 chrY 4693584 4693893 -20019186 + AluSx SINE Alu 1 310 -2 585 207 51 109 chrY 4693893 4693978 -20019101 + L1MB3 LINE L1 5341 5403 -743 * 1868 244 32 29 chrY 4693960 4694452 -20018627 + L1MA2 LINE L1 5477 5970 -334 * 3682 159 30 0 chrY 4694014 4694622 -20018457 + L1PA16 LINE L1 5521 6146 -20 752 194 62 0 chrY 4694631 4694791 -20018288 + L1MB3 LINE L1 5428 5597 -577 341 206 16 0 chrY 4694791 4694854 -20018225 + Charlie1 DNA MER1_type 2697 2760 -1 781 244 6 6 chrY 4695239 4695419 -20017660 + MER58A DNA MER1_type 45 224 0 2299 96 0 13 chrY 4695502 4695814 -20017265 + AluY SINE Alu 1 308 -3 25 0 0 0 chrY 4695814 4695839 -20017240 + AT_rich Low_complexity Low_complexity 1 25 0 2085 198 24 26 chrY 4695973 4696442 -20016637 + MER89 LTR ERV1 1 468 -91 405 214 39 0 chrY 4696451 4696605 -20016474 + (TGGA)n Simple_repeat Simple_repeat 3 162 0 337 261 35 0 chrY 4696620 4696735 -20016344 + (TAGA)n Simple_repeat Simple_repeat 4 122 0 645 199 27 0 chrY 4696735 4697038 -20016041 + (TGGA)n Simple_repeat Simple_repeat 1 311 0 499 196 22 17 chrY 4697058 4697237 -20015842 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 376 230 11 0 chrY 4697249 4697336 -20015743 + MER89 LTR ERV1 472 559 0 1894 142 17 0 chrY 4698210 4698499 -20014580 + AluY SINE Alu 1 294 -17 1611 189 7 23 chrY 4698766 4699068 -20014011 - AluJo SINE Alu -15 297 1 635 128 23 8 chrY 4699857 4699990 -20013089 + (TCCA)n Simple_repeat Simple_repeat 3 137 0 237 33 0 0 chrY 4700010 4700040 -20013039 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 2086 130 0 0 chrY 4700043 4700328 -20012751 - AluSx SINE Alu -27 285 1 207 206 59 7 chrY 4700411 4700547 -20012532 + (TCCA)n Simple_repeat Simple_repeat 3 145 0 1927 124 57 0 chrY 4700686 4700968 -20012111 + AluSc SINE Alu 1 298 -11 3176 199 17 5 chrY 4701012 4701616 -20011463 + L1MB3 LINE L1 5566 6176 -7 2059 134 0 7 chrY 4701928 4702235 -20010844 - AluSg1 SINE Alu 0 309 5 2119 131 3 3 chrY 4702307 4702605 -20010474 + AluSx SINE Alu 1 298 -14 1913 149 36 0 chrY 4702612 4702913 -20010166 + AluSx SINE Alu 1 312 0 1025 155 184 15 chrY 4702921 4703127 -20009952 + AluSg1 SINE Alu 1 241 -68 1897 194 102 36 chrY 4703750 4703875 -20009204 - MLT1D LTR MaLR -4 501 386 1803 166 0 3 chrY 4703875 4704158 -20008921 + AluJo SINE Alu 1 282 -30 1897 194 102 36 chrY 4704158 4704502 -20008577 - MLT1D LTR MaLR -119 386 1 180 325 98 16 chrY 4704518 4704641 -20008438 - MIR SINE MIR -79 183 51 528 158 11 0 chrY 4704650 4704745 -20008334 - L1PA11 LINE L1 0 6174 6079 433 178 0 0 chrY 4704745 4704818 -20008261 - L1P4 LINE L1 -680 5488 5416 * 4600 123 13 1 chrY 4704794 4705470 -20007609 - L1PA11 LINE L1 -81 6093 5410 1105 172 0 26 chrY 4705762 4705954 -20007125 + AluJo SINE Alu 90 276 -36 1032 139 75 111 chrY 4705988 4706268 -20006811 + L1MA8 LINE L1 6020 6289 -2 1898 142 14 3 chrY 4706275 4706570 -20006509 + AluSx SINE Alu 1 298 -14 213 288 0 0 chrY 4706589 4706662 -20006417 + A-rich Low_complexity Low_complexity 1 73 0 657 186 0 0 chrY 4706703 4706805 -20006274 + FLAM_A SINE Alu 27 128 -14 1830 179 3 0 chrY 4706838 4707139 -20005940 - AluSq SINE Alu -11 302 1 279 205 84 12 chrY 4707231 4707314 -20005765 - MLT1D LTR MaLR -30 475 387 * 1934 163 119 26 chrY 4707309 4707666 -20005413 - MSTA LTR MaLR -6 422 25 2704 102 28 3 chrY 4707666 4708030 -20005049 + THE1C LTR MaLR 3 375 0 1934 163 119 26 chrY 4708030 4708058 -20005021 - MSTA LTR MaLR -403 25 1 1827 220 32 3 chrY 4708058 4708435 -20004644 - MLT1D LTR MaLR -113 392 5 2271 125 0 3 chrY 4708648 4708960 -20004119 - AluY SINE Alu 0 311 1 1675 165 33 4 chrY 4709094 4709366 -20003713 - AluJb SINE Alu -32 280 1 3710 159 2 3 chrY 4709448 4710040 -20003039 + L1PA15 LINE L1 5467 6057 -108 758 236 14 7 chrY 4710045 4710193 -20002886 - AluJo SINE Alu -162 150 2 2131 132 0 7 chrY 4710198 4710493 -20002586 - AluSx SINE Alu -19 293 1 398 320 121 21 chrY 4710582 4710730 -20002349 - HAL1 LINE L1 -145 2362 2230 306 0 0 0 chrY 4710730 4710764 -20002315 + (CA)n Simple_repeat Simple_repeat 2 35 0 398 320 121 21 chrY 4710764 4711127 -20001952 - HAL1 LINE L1 -277 2230 1800 221 224 13 66 chrY 4711174 4711250 -20001829 + MIR SINE MIR 108 179 -83 1879 166 16 3 chrY 4711659 4711967 -20001112 - AluSx SINE Alu 0 312 1 488 192 6 33 chrY 4711977 4712159 -20000920 + CT-rich Low_complexity Low_complexity 2 178 0 209 213 0 32 chrY 4712176 4712270 -20000809 + CT-rich Low_complexity Low_complexity 2 92 0 1649 167 0 44 chrY 4712440 4712575 -20000504 + AluJb SINE Alu 1 140 -172 2084 148 0 0 chrY 4712575 4712873 -20000206 + AluSg SINE Alu 1 298 -12 1649 167 0 44 chrY 4712873 4713054 -20000025 + AluJb SINE Alu 140 303 -9 285 151 0 0 chrY 4713401 4713454 -19999625 + (TG)n Simple_repeat Simple_repeat 1 53 0 1731 179 15 3 chrY 4713613 4713937 -19999142 + MLT1A1 LTR MaLR 1 328 -37 1825 147 27 14 chrY 4714067 4714359 -19998720 + AluSq SINE Alu 1 296 -17 265 260 0 26 chrY 4714556 4714633 -19998446 + L1M3 LINE L1 5633 5707 -473 270 0 0 0 chrY 4714674 4714704 -19998375 + (TC)n Simple_repeat Simple_repeat 2 31 0 * 369 0 0 0 chrY 4714703 4714744 -19998335 + (TA)n Simple_repeat Simple_repeat 1 41 0 234 69 0 0 chrY 4714744 4714773 -19998306 - Alu SINE Alu -17 283 255 2164 122 0 3 chrY 4714776 4715072 -19998007 - AluY SINE Alu -16 295 1 1617 192 3 14 chrY 4715081 4715373 -19997706 - AluJb SINE Alu -23 289 1 1586 126 8 8 chrY 4715399 4715637 -19997442 - L1PA14 LINE L1 -2 6159 5922 2054 149 0 0 chrY 4715719 4716020 -19997059 + AluSg SINE Alu 1 301 -9 292 156 13 13 chrY 4716273 4716350 -19996729 + (TA)n Simple_repeat Simple_repeat 2 78 0 710 171 18 9 chrY 4716556 4716778 -19996301 + CT-rich Low_complexity Low_complexity 1 224 0 1126 212 9 0 chrY 4716797 4717014 -19996065 - AluJb SINE Alu -93 219 1 1370 206 87 4 chrY 4717115 4717391 -19995688 + AluJo SINE Alu 1 299 -13 934 213 6 0 chrY 4718013 4718196 -19994883 - AluJo SINE Alu -8 304 121 22 0 0 0 chrY 4718209 4718231 -19994848 + AT_rich Low_complexity Low_complexity 1 22 0 1601 176 17 10 chrY 4718274 4718564 -19994515 - AluSx SINE Alu -20 292 1 4245 153 52 88 chrY 4718572 4719056 -19994023 - L1MC1 LINE L1 0 6333 5898 1566 215 10 0 chrY 4719056 4719349 -19993730 - AluJo SINE Alu -8 304 9 4245 153 52 88 chrY 4719349 4719818 -19993261 - L1MC1 LINE L1 -435 5898 5414 309 272 86 49 chrY 4719821 4720028 -19993051 - L1ME3A LINE L1 -224 5946 5748 2087 180 30 22 chrY 4720028 4720389 -19992690 + THE1B LTR MaLR 1 364 0 309 272 86 49 chrY 4720389 4720592 -19992487 - L1ME3A LINE L1 -422 5748 5530 33 43 0 0 chrY 4720752 4720799 -19992280 + AT_rich Low_complexity Low_complexity 1 47 0 1276 174 8 43 chrY 4720800 4721035 -19992044 - AluJo SINE Alu -49 263 37 320 270 62 89 chrY 4721057 4721238 -19991841 - L1ME3A LINE L1 -2066 4080 3907 2138 106 7 0 chrY 4721238 4721521 -19991558 + AluSc SINE Alu 1 285 -24 320 270 62 89 chrY 4721521 4721598 -19991481 - L1ME3A LINE L1 -2239 3907 3829 288 285 78 68 chrY 4721627 4721851 -19991228 - L1ME3A LINE L1 -2430 3716 3496 2685 103 5 14 chrY 4721851 4722197 -19990882 - L1PA8 LINE L1 -1 6171 5827 5220 99 133 1 chrY 4722197 4722927 -19990152 - LTR12 LTR ERV1 0 826 1 2685 103 5 14 chrY 4722927 4722950 -19990129 - L1PA8 LINE L1 -345 5827 5805 288 285 78 68 chrY 4722950 4723079 -19990000 - L1ME3A LINE L1 -2650 3496 3370 2028 141 7 10 chrY 4723079 4723385 -19989694 - AluSx SINE Alu -7 305 1 288 285 78 68 chrY 4723385 4723532 -19989547 - L1ME3A LINE L1 -2776 3370 3210 278 186 31 68 chrY 4723573 4723653 -19989426 + A-rich Low_complexity Low_complexity 1 82 -388 1602 161 79 0 chrY 4723653 4723933 -19989146 + AluSx SINE Alu 1 302 -10 278 186 31 68 chrY 4723933 4724062 -19989017 + A-rich Low_complexity Low_complexity 82 470 0 863 229 33 0 chrY 4725077 4725260 -19987819 + MER2 DNA MER2_type 1 189 -156 34221 39 14 1 chrY 4725292 4731246 -19981833 - L1PA2 LINE L1 -4 6151 64 1151 158 10 30 chrY 4731247 4731449 -19981630 - AluJo SINE Alu -19 293 96 * 1311 126 0 53 chrY 4731447 4731653 -19981426 - AluSx SINE Alu -117 195 1 897 154 70 0 chrY 4731954 4732097 -19980982 + FRAM SINE Alu 11 163 -13 603 213 7 28 chrY 4732347 4732488 -19980591 - MLT1C LTR MaLR 0 467 330 2523 191 36 38 chrY 4732490 4732615 -19980464 - LTR39 LTR ERV1 -28 755 631 1847 175 3 0 chrY 4732615 4732907 -19980172 + AluJb SINE Alu 6 298 -14 2523 191 36 38 chrY 4732907 4733311 -19979768 - LTR39 LTR ERV1 -152 631 227 390 134 0 0 chrY 4733311 4733378 -19979701 + (TTCC)n Simple_repeat Simple_repeat 1 67 0 251 206 309 0 chrY 4733379 4733476 -19979603 - AluSp/q SINE Alu -5 298 172 1290 219 137 35 chrY 4733511 4733994 -19979085 - LTR10B LTR ERV1 -3 544 13 1155 104 0 0 chrY 4734014 4734158 -19978921 - AluSq/x SINE Alu -169 144 1 792 145 38 44 chrY 4734158 4734216 -19978863 - LTR39 LTR ERV1 -554 229 172 2035 138 3 10 chrY 4734216 4734521 -19978558 - AluSq SINE Alu -7 306 4 792 145 38 44 chrY 4734521 4734621 -19978458 - LTR39 LTR ERV1 -611 172 72 393 161 81 11 chrY 4734669 4734756 -19978323 - LTR39 LTR ERV1 -690 93 1 2172 122 3 0 chrY 4734757 4735084 -19977995 + MER41B LTR ERV1 1 328 -307 1473 164 63 13 chrY 4735098 4735397 -19977682 + MER61A LTR ERV1 30 343 0 991 121 0 0 chrY 4735397 4735531 -19977548 + MER41B LTR ERV1 323 456 -179 858 191 0 0 chrY 4735534 4735681 -19977398 + AluSg/x SINE Alu 163 309 -1 2136 138 3 0 chrY 4735695 4736006 -19977073 + AluSx SINE Alu 1 312 0 993 139 6 0 chrY 4736025 4736191 -19976888 + MER41B LTR ERV1 469 635 0 847 222 105 52 chrY 4736205 4736310 -19976769 - MLT1C LTR MaLR -145 322 224 420 20 0 0 chrY 4736310 4736359 -19976720 + (TG)n Simple_repeat Simple_repeat 2 50 0 847 222 105 52 chrY 4736359 4736495 -19976584 - MLT1C LTR MaLR -243 224 59 3398 123 123 4 chrY 4736495 4736779 -19976300 + MER41B LTR ERV1 4 253 -382 315 71 0 0 chrY 4736779 4736821 -19976258 + (CCCTAA)n Simple_repeat Simple_repeat 1 42 0 3398 123 123 4 chrY 4736821 4737099 -19975980 + MER41B LTR ERV1 253 633 -2 847 222 105 52 chrY 4737099 4737162 -19975917 - MLT1C LTR MaLR -408 59 1 191 221 0 103 chrY 4737307 4737375 -19975704 - MER5B DNA MER1_type -8 170 110 1711 181 3 3 chrY 4737403 4737690 -19975389 - AluSx SINE Alu -21 291 5 1075 205 138 41 chrY 4737781 4738049 -19975030 + AluJo SINE Alu 1 294 -8 4279 57 14 16 chrY 4738691 4739250 -19973829 + LTR6B LTR ERV1 1 558 0 3048 149 76 117 chrY 4739549 4740487 -19972592 + pTR5 LTR ERV1 1131 2293 -145 1913 120 40 4 chrY 4740507 4740817 -19972262 + AluSx SINE Alu 3 312 0 1671 146 0 11 chrY 4741515 4741775 -19971304 + AluSx SINE Alu 1 257 -55 1532 200 40 0 chrY 4741819 4742119 -19970960 - AluJo SINE Alu 0 312 1 2325 109 0 3 chrY 4742303 4742605 -19970474 + AluSx SINE Alu 1 301 -11 2002 173 0 0 chrY 4742744 4743056 -19970023 - AluSx SINE Alu 0 312 1 1660 211 20 0 chrY 4743078 4743376 -19969703 - AluJo SINE Alu -8 304 1 225 178 0 0 chrY 4743937 4743982 -19969097 + A-rich Low_complexity Low_complexity 1 45 0 468 211 60 60 chrY 4744023 4744156 -19968923 - AluJb SINE Alu -177 135 3 1019 140 34 0 chrY 4744329 4744508 -19968571 - L1MA5A LINE L1 -2 6295 6111 333 118 0 0 chrY 4744515 4744554 -19968525 + (TG)n Simple_repeat Simple_repeat 1 90 0 333 118 0 0 chrY 4744554 4744605 -19968474 + (TG)n Simple_repeat Simple_repeat 2 52 0 1935 154 0 0 chrY 4744605 4744891 -19968188 - AluSx SINE Alu -26 286 1 342 215 0 0 chrY 4744906 4744985 -19968094 + (CA)n Simple_repeat Simple_repeat 2 80 0 1787 161 18 0 chrY 4744999 4745272 -19967807 - AluJb SINE Alu -22 290 13 459 146 0 0 chrY 4745283 4745365 -19967714 - L1MA5A LINE L1 -177 6120 6039 244 132 0 0 chrY 4745620 4745658 -19967421 + MADE1 DNA Mariner 2 39 -41 1233 148 30 15 chrY 4745658 4745679 -19967400 - AluSg/x SINE Alu -12 300 281 201 39 0 0 chrY 4745679 4745705 -19967374 + (TG)n Simple_repeat Simple_repeat 1 26 0 1233 148 30 15 chrY 4745705 4745885 -19967194 - AluSg/x SINE Alu -31 281 96 1191 165 133 39 chrY 4745987 4746242 -19966837 + AluJo SINE Alu 15 293 -19 854 222 0 30 chrY 4746429 4746596 -19966483 - FRAM SINE Alu 0 166 5 1800 152 0 0 chrY 4746600 4746857 -19966222 - AluSq SINE Alu -54 259 3 216 0 0 0 chrY 4746870 4746894 -19966185 + (CA)n Simple_repeat Simple_repeat 2 25 0 602 124 38 0 chrY 4746896 4747001 -19966078 + L1PB4 LINE L1 5793 5901 -255 21 82 0 0 chrY 4747018 4747067 -19966012 + AT_rich Low_complexity Low_complexity 1 49 0 368 241 36 18 chrY 4747073 4747239 -19965840 + (TA)n Simple_repeat Simple_repeat 2 170 0 1126 157 77 119 chrY 4747300 4747612 -19965467 - AluJo SINE Alu -3 299 1 301 247 48 41 chrY 4748858 4749004 -19964075 + MER53 DNA DNA 37 183 -6 24 32 0 0 chrY 4749480 4749511 -19963568 + GC_rich Low_complexity Low_complexity 1 31 0 25 31 0 0 chrY 4750050 4750082 -19962997 + GC_rich Low_complexity Low_complexity 1 32 0 397 308 0 22 chrY 4751350 4751532 -19961547 + CT-rich Low_complexity Low_complexity 2 179 0 270 0 0 0 chrY 4752078 4752108 -19960971 + (TG)n Simple_repeat Simple_repeat 2 31 0 1886 132 38 7 chrY 4752588 4752876 -19960203 + AluSq SINE Alu 1 297 -16 1431 219 0 28 chrY 4753181 4753501 -19959578 + AluJo SINE Alu 1 311 -1 291 54 0 0 chrY 4753525 4753562 -19959517 + (TAAAA)n Simple_repeat Simple_repeat 2 38 0 2053 146 0 13 chrY 4753713 4754022 -19959057 + AluSg SINE Alu 1 305 -5 282 256 49 24 chrY 4754178 4754260 -19958819 + MIR SINE MIR 100 183 -79 458 269 60 0 chrY 4754297 4754464 -19958615 - L1MD3 LINE L1 -17 7978 7802 1926 148 13 20 chrY 4754465 4754770 -19958309 - AluJo SINE Alu -9 303 1 336 238 20 86 chrY 4754770 4754921 -19958158 - L1MD2 LINE L1 -176 6183 6043 2169 223 21 23 chrY 4755078 4755590 -19957489 - LTR10D LTR ERV1 -2 511 1 249 222 0 0 chrY 4755660 4755705 -19957374 - MLT1A1 LTR MaLR -5 360 316 1041 120 14 0 chrY 4755705 4755847 -19957232 - AluY SINE Alu -13 298 155 1663 163 14 3 chrY 4755852 4756147 -19956932 - MLT1A1 LTR MaLR -67 298 1 205 96 0 58 chrY 4756485 4756537 -19956542 + (TTAAA)n Simple_repeat Simple_repeat 1 49 0 491 168 0 50 chrY 4756567 4756668 -19956411 - FLAM_C SINE Alu -26 117 22 350 276 95 19 chrY 4756758 4756863 -19956216 + MER81 DNA DNA 1 113 -1 2525 78 0 0 chrY 4757000 4757309 -19955770 - AluY SINE Alu -2 309 1 1490 198 10 17 chrY 4757314 4757612 -19955467 - AluJo SINE Alu -10 302 7 592 158 53 9 chrY 4757844 4757958 -19955121 + AluJb SINE Alu 177 295 -17 1538 180 3 49 chrY 4757967 4758093 -19954986 + AluJb SINE Alu 1 131 -181 2016 141 7 0 chrY 4758093 4758384 -19954695 - AluSg SINE Alu -17 293 1 1538 180 3 49 chrY 4758384 4758563 -19954516 + AluJb SINE Alu 131 292 -20 189 200 0 0 chrY 4758587 4758622 -19954457 + L2 LINE L2 3261 3295 -18 207 0 0 0 chrY 4758747 4758770 -19954309 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1667 202 26 14 chrY 4759039 4759385 -19953694 + MLT1A1 LTR MaLR 14 363 -2 888 205 30 43 chrY 4759711 4759945 -19953134 + L1MB5 LINE L1 5936 6166 -8 1335 134 5 0 chrY 4760062 4760256 -19952823 - AluSg/x SINE Alu -19 291 97 2076 183 10 16 chrY 4760349 4760570 -19952509 - MLT1B LTR MaLR 0 390 170 1645 178 20 20 chrY 4760570 4760874 -19952205 - AluJo SINE Alu -8 304 1 2076 183 10 16 chrY 4760874 4761040 -19952039 - MLT1B LTR MaLR -220 170 5 226 268 0 0 chrY 4761186 4761242 -19951837 - MLT1C LTR MaLR 0 467 412 1206 187 8 8 chrY 4761254 4761500 -19951579 + L1MA8 LINE L1 5676 5921 -370 1666 170 21 10 chrY 4761502 4761790 -19951289 - AluJb SINE Alu -21 291 1 2161 135 0 6 chrY 4762205 4762517 -19950562 + AluSx SINE Alu 1 310 -2 1078 140 0 28 chrY 4762870 4763049 -19950030 - FRAM SINE Alu -7 169 1 1842 176 10 13 chrY 4763185 4763492 -19949587 + AluJb SINE Alu 1 306 -6 3991 116 2 0 chrY 4764049 4764602 -19948477 - MER41A LTR ERV1 0 554 1 1864 134 62 10 chrY 4764773 4765096 -19947983 + AluSg SINE Alu 1 310 0 1443 209 14 17 chrY 4765106 4765398 -19947681 + AluJo SINE Alu 12 302 -10 21 0 0 0 chrY 4765429 4765450 -19947629 + AT_rich Low_complexity Low_complexity 1 21 0 1748 163 12 35 chrY 4765605 4765924 -19947155 + AluJb SINE Alu 1 312 0 244 233 0 17 chrY 4765927 4765987 -19947092 + A-rich Low_complexity Low_complexity 3 61 0 307 294 15 7 chrY 4766115 4766251 -19946828 - L1M4 LINE L1 -2910 3236 3100 668 195 31 130 chrY 4766644 4766737 -19946342 - MLT1C LTR MaLR -199 268 167 1906 151 3 7 chrY 4766737 4767041 -19946038 - AluSq SINE Alu -10 303 1 668 195 31 130 chrY 4767041 4767239 -19945840 - MLT1C LTR MaLR -300 167 6 1611 178 20 30 chrY 4767862 4768160 -19944919 - AluJo SINE Alu -17 295 1 1894 178 0 0 chrY 4768278 4768576 -19944503 - AluSx SINE Alu -14 298 1 2201 128 3 0 chrY 4768586 4768884 -19944195 - AluSp SINE Alu -14 299 1 2270 103 0 13 chrY 4769194 4769504 -19943575 - AluY SINE Alu -5 306 1 1489 185 56 0 chrY 4769746 4770016 -19943063 + AluJo SINE Alu 3 291 -21 198 0 0 0 chrY 4770016 4770038 -19943041 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 1489 185 56 0 chrY 4770038 4770054 -19943025 + AluJo SINE Alu 291 305 -7 641 155 0 39 chrY 4770065 4770194 -19942885 + L1MB3 LINE L1 6059 6182 -1 800 191 8 0 chrY 4770231 4770362 -19942717 + FLAM_C SINE Alu 2 133 0 1861 164 0 7 chrY 4770689 4770988 -19942091 - AluJb SINE Alu -13 299 3 209 275 232 21 chrY 4771184 4771326 -19941753 - MIR SINE MIR -12 250 79 493 159 35 24 chrY 4771381 4771551 -19941528 + GA-rich Low_complexity Low_complexity 1 172 0 1149 190 0 5 chrY 4771650 4771845 -19941234 + AluJo SINE Alu 1 194 -118 2053 137 0 10 chrY 4771877 4772183 -19940896 + AluSg1 SINE Alu 1 303 -6 962 196 5 21 chrY 4772183 4772361 -19940718 + AluSg/x SINE Alu 136 312 0 847 210 44 0 chrY 4772365 4772570 -19940509 + MLT1B LTR MaLR 172 385 -5 1884 156 7 13 chrY 4772998 4773305 -19939774 - AluJo SINE Alu -7 305 1 1289 224 70 33 chrY 4773665 4774093 -19938986 - MLT1C LTR MaLR -23 444 1 299 232 226 5 chrY 4774103 4774293 -19938786 - MLT1C LTR MaLR -122 345 114 360 0 0 0 chrY 4774293 4774333 -19938746 + (TA)n Simple_repeat Simple_repeat 2 41 0 276 145 9 49 chrY 4774343 4774448 -19938631 - AluJo SINE Alu -166 136 1 399 240 10 0 chrY 4774461 4774565 -19938514 - MLT1C LTR MaLR -359 108 4 1073 163 11 16 chrY 4775187 4775404 -19937675 - AluSg/x SINE Alu 0 313 98 259 263 0 0 chrY 4775585 4775642 -19937437 - MLT1J LTR MaLR -339 172 116 967 164 19 6 chrY 4776936 4777095 -19935984 + AluJb SINE Alu 129 289 -23 1698 217 36 36 chrY 4777183 4777361 -19935718 - L1MA9 LINE L1 -191 6121 5944 2544 111 3 14 chrY 4777361 4777729 -19935350 - THE1B LTR MaLR 0 364 1 1698 217 36 36 chrY 4777729 4777993 -19935086 - L1MA9 LINE L1 -367 5945 5679 1060 191 156 13 chrY 4778379 4778604 -19934475 + AluSg1 SINE Alu 9 265 -44 182 191 21 0 chrY 4778707 4778754 -19934325 + GA-rich Low_complexity Low_complexity 1 48 0 437 244 0 13 chrY 4778866 4779022 -19934057 + GA-rich Low_complexity Low_complexity 1 154 0 213 132 0 0 chrY 4779422 4779460 -19933619 + (TC)n Simple_repeat Simple_repeat 2 39 0 2018 164 40 3 chrY 4780348 4780696 -19932383 - MLT1A1 LTR MaLR 0 365 5 1098 118 0 0 chrY 4781382 4781535 -19931544 + AluSx SINE Alu 5 157 -155 1574 185 0 17 chrY 4781815 4782113 -19930966 - AluSx SINE Alu -19 293 1 7542 37 2 0 chrY 4782171 4783552 -19929527 - L1PA4 LINE L1 0 6155 4774 27 49 0 0 chrY 4783628 4783669 -19929410 + AT_rich Low_complexity Low_complexity 1 41 0 854 189 0 0 chrY 4783674 4783838 -19929241 - AluJb SINE Alu -26 286 123 25 31 0 0 chrY 4783838 4783870 -19929209 + AT_rich Low_complexity Low_complexity 1 32 0 805 268 9 5 chrY 4783948 4784161 -19928918 - AluJo SINE Alu -98 214 1 698 197 0 0 chrY 4784469 4784591 -19928488 + FLAM_C SINE Alu 5 126 -7 1237 192 0 0 chrY 4784607 4784831 -19928248 + AluSg/x SINE Alu 87 310 -2 1749 177 0 0 chrY 4785040 4785328 -19927751 + AluJb SINE Alu 5 292 -20 619 242 43 54 chrY 4785845 4786031 -19927048 - MER20 DNA MER1_type -35 184 1 360 209 52 29 chrY 4786032 4786204 -19926875 + (TAGA)n Simple_repeat Simple_repeat 3 178 0 700 195 65 18 chrY 4786706 4786875 -19926204 - MER20 DNA MER1_type 0 219 43 198 0 0 0 chrY 4786973 4786995 -19926084 + (TGGA)n Simple_repeat Simple_repeat 1 22 0 426 178 24 32 chrY 4787028 4787281 -19925798 + (TAGA)n Simple_repeat Simple_repeat 1 250 0 192 77 0 0 chrY 4787291 4787317 -19925762 + (TGGA)n Simple_repeat Simple_repeat 3 28 0 1898 148 7 0 chrY 4787426 4787731 -19925348 - AluSx SINE Alu -5 307 1 2212 98 0 0 chrY 4787779 4788076 -19925003 - AluY SINE Alu -14 297 1 604 267 37 37 chrY 4788385 4788576 -19924503 - MER20 DNA MER1_type -27 192 2 334 197 58 15 chrY 4788675 4788812 -19924267 + (TAGA)n Simple_repeat Simple_repeat 3 145 0 684 225 70 47 chrY 4788849 4789062 -19924017 - MER20 DNA MER1_type -1 218 1 218 169 42 68 chrY 4789063 4789181 -19923898 + (TAGA)n Simple_repeat Simple_repeat 3 117 0 26 50 0 0 chrY 4789250 4789290 -19923789 + AT_rich Low_complexity Low_complexity 1 40 0 186 43 0 0 chrY 4790143 4790166 -19922913 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 1338 203 0 20 chrY 4790480 4790775 -19922304 - AluJo SINE Alu -21 291 3 498 229 110 0 chrY 4790781 4790899 -19922180 - FLAM_C SINE Alu -11 132 2 550 208 0 0 chrY 4790934 4791030 -19922049 + AluSg/x SINE Alu 170 265 -45 1985 195 23 44 chrY 4791041 4791519 -19921560 - L1MB3 LINE L1 -56 6127 5660 1696 166 13 0 chrY 4791533 4791840 -19921239 - AluSx SINE Alu -1 311 1 288 189 0 0 chrY 4792083 4792136 -19920943 - MER4-int LTR ERV1 -5434 1164 1112 209 261 22 0 chrY 4792136 4792182 -19920897 + (CACG)n Simple_repeat Simple_repeat 3 49 0 1871 185 19 29 chrY 4792294 4792705 -19920374 - L1PB4 LINE L1 -1 6155 5749 1600 181 0 13 chrY 4792736 4793040 -19920039 + AluJo SINE Alu 11 310 -2 1337 207 14 30 chrY 4793611 4793906 -19919173 - AluJo SINE Alu -17 295 6 755 169 0 0 chrY 4794081 4794199 -19918880 + AluJo/FLAM SINE Alu 2 119 -193 1285 199 33 11 chrY 4794199 4794470 -19918609 - AluJo SINE Alu -17 295 19 565 181 17 17 chrY 4794476 4794592 -19918487 - AluJo SINE Alu -166 146 31 1696 179 0 3 chrY 4795276 4795572 -19917507 - AluJo SINE Alu -14 298 4 229 185 31 0 chrY 4795962 4796027 -19917052 + CT-rich Low_complexity Low_complexity 4 70 0 300 53 0 0 chrY 4796385 4796423 -19916656 + (GA)n Simple_repeat Simple_repeat 1 38 0 1106 145 0 5 chrY 4796953 4797139 -19915940 + AluSg/x SINE Alu 128 312 0 1477 169 50 17 chrY 4797559 4797860 -19915219 - AluJo SINE Alu -1 311 1 1451 183 70 18 chrY 4798258 4798378 -19914701 + AluJb SINE Alu 1 113 -189 359 41 20 0 chrY 4798378 4798427 -19914652 + (TAA)n Simple_repeat Simple_repeat 2 51 0 1451 183 70 18 chrY 4798427 4798590 -19914489 + AluJb SINE Alu 113 299 -3 1876 209 19 0 chrY 4799008 4799386 -19913693 - MLT1B LTR MaLR -4 386 2 969 249 63 20 chrY 4799489 4799839 -19913240 + MLT1A1 LTR MaLR 1 365 0 1017 107 4 179 chrY 4800093 4800327 -19912752 - 7SK RNA RNA 0 193 1 969 162 6 6 chrY 4802079 4802261 -19910818 + L1PB3 LINE L1 5830 6011 -143 1405 173 71 0 chrY 4802682 4802936 -19910143 + AluJo SINE Alu 28 299 -13 30 69 0 0 chrY 4802999 4803057 -19910022 + AT_rich Low_complexity Low_complexity 1 58 0 411 38 0 0 chrY 4803174 4803227 -19909852 + (TG)n Simple_repeat Simple_repeat 1 53 0 1508 159 19 0 chrY 4803259 4803530 -19909549 - AluSx SINE Alu -19 293 18 1559 199 0 10 chrY 4803734 4804041 -19909038 - AluJo SINE Alu -8 304 1 1834 119 37 14 chrY 4804097 4804392 -19908687 - AluSg SINE Alu -8 302 1 1784 125 20 20 chrY 4804760 4805065 -19908014 - AluSx SINE Alu -7 305 1 1980 108 0 51 chrY 4805077 4805392 -19907687 - AluY SINE Alu -4 307 9 563 193 0 83 chrY 4805394 4805539 -19907540 - AluJo SINE Alu -178 134 2 896 222 43 32 chrY 4805975 4806254 -19906825 - Charlie5 DNA MER1_type 0 2624 2343 761 187 0 8 chrY 4806265 4806399 -19906680 + FLAM_C SINE Alu 1 133 0 1101 130 17 74 chrY 4806423 4806654 -19906425 - MER39 LTR ERV1 -84 623 406 912 184 92 10 chrY 4806667 4806863 -19906216 - MSTC LTR MaLR -50 378 167 610 164 8 60 chrY 4806899 4807033 -19906046 - L1PB2 LINE L1 -3 6148 6022 1844 147 3 7 chrY 4807034 4807341 -19905738 - AluSx SINE Alu -6 306 1 2026 138 0 0 chrY 4807578 4807876 -19905203 - AluSx SINE Alu -5 307 10 1955 134 3 0 chrY 4808179 4808471 -19904608 - AluSg SINE Alu -17 293 1 1645 199 0 0 chrY 4808471 4808809 -19904270 - AluSx SINE Alu 0 312 1 1634 191 0 0 chrY 4808933 4809232 -19903847 - AluJo SINE Alu -9 303 5 316 146 49 0 chrY 4809232 4809314 -19903765 + C-rich Low_complexity Low_complexity 1 86 0 182 174 14 43 chrY 4809318 4809387 -19903692 + T-rich Low_complexity Low_complexity 3 69 0 1310 152 22 30 chrY 4809716 4809947 -19903132 - MER46A DNA MER2_type -7 229 1 704 186 8 0 chrY 4810066 4810190 -19902889 - AluJb SINE Alu -179 133 9 250 313 35 28 chrY 4810332 4810476 -19902603 - L1MC5 LINE L1 -54 7907 7763 305 113 0 113 chrY 4810570 4810632 -19902447 + AluJo SINE Alu 85 139 -163 417 237 14 3 chrY 4810634 4810789 -19902290 + MER58A DNA MER1_type 22 224 0 1336 216 97 8 chrY 4810821 4811172 -19901907 + L1MB3 LINE L1 5790 6171 -12 318 356 64 42 chrY 4811192 4811428 -19901651 + L1MCa LINE L1 1964 2204 -4222 23 68 0 0 chrY 4811428 4811472 -19901607 + AT_rich Low_complexity Low_complexity 1 44 0 270 294 17 6 chrY 4811523 4811700 -19901379 + (TA)n Simple_repeat Simple_repeat 2 180 0 21 0 0 0 chrY 4811705 4811726 -19901353 + AT_rich Low_complexity Low_complexity 1 21 0 690 168 10 122 chrY 4812522 4812582 -19900497 - L1MB5 LINE L1 -1 6179 6114 1685 174 10 3 chrY 4812582 4812876 -19900203 - AluJo SINE Alu -16 296 1 690 168 10 122 chrY 4812876 4813011 -19900068 - L1MB5 LINE L1 -66 6114 6006 468 215 116 16 chrY 4813011 4813132 -19899947 - MLT1C LTR MaLR -327 140 8 1286 222 36 13 chrY 4814090 4814254 -19898825 - AluJo SINE Alu -3 309 133 1925 124 7 0 chrY 4814254 4814536 -19898543 - AluSq SINE Alu -20 293 10 1286 222 36 13 chrY 4814536 4814673 -19898406 - AluJo SINE Alu -179 133 1 39 68 0 0 chrY 4815050 4815124 -19897955 + AT_rich Low_complexity Low_complexity 1 74 0 1149 158 87 0 chrY 4815445 4815641 -19897438 - LTR36 LTR ERV1 0 611 399 1633 149 23 0 chrY 4815794 4816056 -19897023 - AluSg SINE Alu -36 274 7 27 49 0 0 chrY 4816126 4816167 -19896912 + AT_rich Low_complexity Low_complexity 1 41 0 1776 167 40 12 chrY 4816174 4816503 -19896576 - L1PA15 LINE L1 -13 6152 5815 614 182 9 0 chrY 4817263 4817373 -19895706 + HY1 scRNA scRNA 1 111 -1 4188 121 16 3 chrY 4817558 4817675 -19895404 - MER41B LTR ERV1 0 635 521 1804 131 21 0 chrY 4817675 4817957 -19895122 + AluSc SINE Alu 22 309 0 4188 121 16 3 chrY 4817957 4818466 -19894613 - MER41B LTR ERV1 -114 521 1 822 147 11 17 chrY 4819491 4819668 -19893411 + (TCCA)n Simple_repeat Simple_repeat 2 177 0 485 241 29 3 chrY 4819762 4820111 -19892968 + (TCTA)n Simple_repeat Simple_repeat 1 358 0 1604 117 72 19 chrY 4820245 4820509 -19892570 + AluSp SINE Alu 1 278 -35 216 0 0 0 chrY 4820516 4820540 -19892539 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 21 36 0 0 chrY 4820811 4820839 -19892240 + AT_rich Low_complexity Low_complexity 1 28 0 222 176 0 59 chrY 4820906 4820974 -19892105 + (TATAA)n Simple_repeat Simple_repeat 1 64 0 1763 139 3 10 chrY 4821001 4821296 -19891783 + AluSq SINE Alu 3 295 -18 1378 216 0 16 chrY 4822555 4822861 -19890218 + AluJo SINE Alu 1 301 -11 637 284 11 84 chrY 4823190 4823453 -19889626 - Charlie1 DNA MER1_type -4 2757 2537 1485 154 16 46 chrY 4823453 4823759 -19889320 + AluJb SINE Alu 1 297 -15 637 284 11 84 chrY 4823759 4823935 -19889144 - Charlie1 DNA MER1_type -224 2537 2350 1789 152 13 13 chrY 4824169 4824478 -19888601 - AluSx SINE Alu -3 309 1 1782 149 13 16 chrY 4824842 4825150 -19887929 - AluJo SINE Alu -4 308 2 1546 168 7 46 chrY 4825152 4825455 -19887624 - AluJo SINE Alu -19 293 3 1903 147 3 0 chrY 4825457 4825750 -19887329 - AluJo SINE Alu -18 294 1 1168 240 102 37 chrY 4826741 4827174 -19885905 - MLT1C LTR MaLR -1 466 6 1717 168 145 18 chrY 4827461 4827841 -19885238 + MSTA LTR MaLR 1 428 0 23 54 0 0 chrY 4827890 4827927 -19885152 + AT_rich Low_complexity Low_complexity 1 37 0 938 194 20 10 chrY 4828182 4828378 -19884701 + AluJo SINE Alu 97 294 -18 1308 186 0 77 chrY 4828477 4828788 -19884291 + AluJo SINE Alu 5 291 -21 451 129 0 0 chrY 4829026 4829088 -19883991 - AluSg/x SINE Alu -38 272 211 1672 169 4 0 chrY 4829192 4829465 -19883614 - AluSx SINE Alu -38 274 1 423 149 0 0 chrY 4829465 4829539 -19883540 + (TACTG)n Simple_repeat Simple_repeat 4 77 0 957 215 14 9 chrY 4829561 4829784 -19883295 - AluJb SINE Alu -2 310 87 5521 139 9 71 chrY 4829788 4830598 -19882481 - L1MA5A LINE L1 0 6297 5438 1732 158 3 26 chrY 4830598 4830908 -19882171 + AluJb SINE Alu 2 304 -8 411 123 0 0 chrY 4830845 4830910 -19882169 + Alu SINE Alu 242 306 -6 * 5521 139 9 71 chrY 4830908 4830972 -19882107 - L1MA5A LINE L1 -859 5438 5372 1983 126 10 3 chrY 4830972 4831261 -19881818 - AluSq SINE Alu -3 310 23 5521 139 9 71 chrY 4831261 4831480 -19881599 - L1MA5A LINE L1 -925 5372 5271 1625 189 7 13 chrY 4833155 4833462 -19879617 + AluJo SINE Alu 1 305 -7 207 0 0 0 chrY 4833462 4833485 -19879594 + (TG)n Simple_repeat Simple_repeat 2 24 0 228 35 0 0 chrY 4833507 4833536 -19879543 + (CA)n Simple_repeat Simple_repeat 2 30 0 476 183 119 71 chrY 4833884 4834010 -19879069 - FLAM_C SINE Alu -1 132 1 1459 184 24 24 chrY 4834513 4834807 -19878272 - AluJo SINE Alu -14 298 5 216 62 42 21 chrY 4834897 4834945 -19878134 + (CAA)n Simple_repeat Simple_repeat 3 51 0 1505 168 7 46 chrY 4835918 4836203 -19876876 - AluSx SINE Alu -10 302 29 658 283 5 24 chrY 4836289 4836494 -19876585 - L1MB8 LINE L1 0 6178 5978 524 65 0 0 chrY 4836494 4836556 -19876523 - Charlie3 DNA MER1_type -4 2706 2645 * 1524 158 12 20 chrY 4836553 4836800 -19876279 - Charlie3 DNA MER1_type -2464 246 2 1306 226 10 3 chrY 4836801 4837110 -19875969 - L1MB8 LINE L1 -193 5985 5675 1255 219 90 42 chrY 4837452 4837862 -19875217 - MLT1C LTR MaLR -16 451 22 1101 209 85 42 chrY 4837893 4838223 -19874856 - MLT1C LTR MaLR -123 344 1 2789 181 42 49 chrY 4838624 4838800 -19874279 - L1MA8 LINE L1 -1 6290 6114 814 144 8 0 chrY 4838800 4838925 -19874154 - FLAM_C SINE Alu -6 127 2 2789 181 42 49 chrY 4838925 4839173 -19873906 - L1MA8 LINE L1 -177 6114 5866 1401 181 96 4 chrY 4839173 4839454 -19873625 - AluSx SINE Alu -3 309 3 2789 181 42 49 chrY 4839454 4839737 -19873342 - L1MA8 LINE L1 -425 5866 5587 32 57 0 0 chrY 4840354 4840407 -19872672 + AT_rich Low_complexity Low_complexity 1 53 0 376 178 25 6 chrY 4840542 4840699 -19872380 + (TA)n Simple_repeat Simple_repeat 1 160 0 1606 208 3 3 chrY 4840708 4841006 -19872073 + AluJo SINE Alu 2 299 -13 652 219 16 1 chrY 4841006 4841261 -19871818 - Tigger3(Golem) DNA MER2_type -2738 291 1 232 94 0 125 chrY 4841264 4841282 -19871797 + (CA)n Simple_repeat Simple_repeat 2 21 -36 1731 188 3 7 chrY 4841282 4841574 -19871505 - AluJb SINE Alu -17 295 5 232 94 0 125 chrY 4841574 4841619 -19871460 + (CA)n Simple_repeat Simple_repeat 21 57 0 228 189 38 0 chrY 4841654 4841707 -19871372 + L1MC4 LINE L1 6649 6703 -1339 280 133 33 44 chrY 4841708 4841798 -19871281 + (TATATG)n Simple_repeat Simple_repeat 2 90 0 239 141 141 0 chrY 4841800 4841871 -19871208 - L1MC3 LINE L1 -1137 6648 6568 400 174 0 37 chrY 4841875 4841984 -19871095 + (TATATG)n Simple_repeat Simple_repeat 6 110 0 230 297 25 55 chrY 4842613 4842751 -19870328 + MIR SINE MIR 28 162 -46 949 168 9 24 chrY 4843322 4843520 -19869559 - L1MA4A LINE L1 -342 5963 5766 809 159 8 0 chrY 4843537 4843669 -19869410 - FLAM_C SINE Alu 0 133 1 296 116 0 0 chrY 4843669 4843712 -19869367 - L1MA4A LINE L1 -505 5786 5744 1672 208 0 0 chrY 4843929 4844222 -19868857 + AluSx SINE Alu 3 295 -17 2031 122 0 0 chrY 4844223 4844494 -19868585 + AluSc SINE Alu 22 292 -17 252 278 28 0 chrY 4844525 4844597 -19868482 - MIR SINE MIR -119 143 70 3082 157 10 40 chrY 4844610 4844664 -19868415 - L1MA4A LINE L1 -27 6276 6222 2010 144 0 16 chrY 4844664 4844976 -19868103 + AluSg1 SINE Alu 1 307 -2 3082 157 10 40 chrY 4844976 4845326 -19867753 - L1MA4A LINE L1 -81 6222 5890 1815 159 44 0 chrY 4845326 4845622 -19867457 - AluSx SINE Alu -3 309 1 3082 157 10 40 chrY 4845622 4845814 -19867265 - L1MA4A LINE L1 -413 5890 5694 2019 153 0 10 chrY 4845952 4846252 -19866827 - AluSx SINE Alu -13 299 3 516 226 50 91 chrY 4846398 4846630 -19866449 - L1MC4a LINE L1 -1759 6049 5830 2130 129 0 0 chrY 4846630 4846925 -19866154 - AluSx SINE Alu -17 295 1 516 226 50 91 chrY 4846925 4846989 -19866090 - L1MC4a LINE L1 -1978 5830 5765 1711 172 0 14 chrY 4847006 4847296 -19865783 - AluJo SINE Alu -26 286 1 33 0 0 0 chrY 4848137 4848170 -19864909 + AT_rich Low_complexity Low_complexity 1 33 0 2085 145 0 0 chrY 4849245 4849549 -19863530 - AluSc SINE Alu -5 304 1 1979 122 18 4 chrY 4849606 4849912 -19863167 - AluSx SINE Alu 0 310 1 2174 105 14 3 chrY 4850120 4850416 -19862663 + AluSc SINE Alu 1 299 -10 1527 202 24 3 chrY 4850665 4850952 -19862127 + AluJb SINE Alu 1 293 -19 1798 128 4 0 chrY 4850955 4851206 -19861873 + AluSq SINE Alu 1 252 -61 189 0 0 0 chrY 4851745 4851766 -19861313 + (TG)n Simple_repeat Simple_repeat 2 22 0 1696 180 3 30 chrY 4852156 4852456 -19860623 + AluJb SINE Alu 1 292 -20 1649 162 28 28 chrY 4853600 4853890 -19859189 + AluJb SINE Alu 14 303 -9 686 210 0 0 chrY 4853972 4854091 -19858988 + FLAM_C SINE Alu 14 132 -11 680 140 0 9 chrY 4854405 4854512 -19858567 + U6 snRNA snRNA 2 107 0 2025 119 7 7 chrY 4855105 4855399 -19857680 + AluSx SINE Alu 17 310 -2 247 219 110 0 chrY 4857340 4857413 -19855666 - MER58 DNA MER1_type 0 2420 2340 491 227 0 0 chrY 4857440 4857537 -19855542 + AluJo SINE Alu 6 102 -210 30 45 0 0 chrY 4857898 4857942 -19855137 + AT_rich Low_complexity Low_complexity 1 44 0 759 176 0 16 chrY 4858110 4858235 -19854844 + AluJo SINE Alu 90 212 -100 342 0 0 0 chrY 4858237 4858275 -19854804 + (TG)n Simple_repeat Simple_repeat 2 39 0 204 144 68 34 chrY 4858275 4858393 -19854686 + (TAGA)n Simple_repeat Simple_repeat 2 123 0 1004 177 32 45 chrY 4858425 4858645 -19854434 - MER20 DNA MER1_type -1 218 2 541 310 110 32 chrY 4859090 4859605 -19853474 + L2 LINE L2 2729 3286 -27 2237 110 3 7 chrY 4859785 4860094 -19852985 + AluSq SINE Alu 1 308 -5 1713 178 0 14 chrY 4860792 4861102 -19851977 + AluJo SINE Alu 2 307 0 273 257 0 54 chrY 4861150 4861224 -19851855 + MER63 DNA MER1_type 672 741 -321 21350 110 22 10 chrY 4861224 4865062 -19848017 - HERV9 LTR ERV1 -4429 3970 1 4355 71 138 133 chrY 4865062 4865884 -19847195 - LTR12 LTR ERV1 0 826 1 3175 203 27 34 chrY 4865885 4866166 -19846913 + MER4D LTR ERV1 195 476 -427 2079 137 10 3 chrY 4866166 4866472 -19846607 + AluSq SINE Alu 1 308 -5 3175 203 27 34 chrY 4866472 4866567 -19846512 + MER4D LTR ERV1 476 570 -333 4511 144 27 23 chrY 4866567 4867343 -19845736 + MER4E LTR ERV1 1 779 0 3175 203 27 34 chrY 4867343 4867679 -19845400 + MER4D LTR ERV1 570 903 0 1167 169 41 9 chrY 4867855 4868074 -19845005 - MER41C LTR ERV1 0 554 329 1281 182 37 21 chrY 4868138 4868434 -19844645 + LTR10B LTR ERV1 306 547 0 1788 241 97 65 chrY 4868564 4869275 -19843804 + HERV17 LTR ERV1 405 1138 -6647 5646 268 23 28 chrY 4869337 4871280 -19841799 + HERV17 LTR ERV1 937 3284 -3963 584 248 0 0 chrY 4871280 4871393 -19841686 + HERV17 LTR ERV1 1062 1174 -7452 6665 28 1 11 chrY 4871397 4872184 -19840895 - L1PA3 LINE L1 -2 6153 5375 3799 48 15 1 chrY 4872184 4872701 -19840378 + L1M LINE L1 4863 5387 -796 7492 280 50 60 chrY 4872701 4876401 -19836678 + HERV17 LTR ERV1 2985 6649 0 1220 174 53 24 chrY 4876483 4876776 -19836303 + LTR10B LTR ERV1 306 547 0 * 1832 180 56 3 chrY 4876776 4877111 -19835968 - MER41C LTR ERV1 -201 353 1 2765 159 20 70 chrY 4877163 4877302 -19835777 - MER1A DNA MER1_type -2173 527 383 2206 141 0 3 chrY 4877302 4877615 -19835464 - AluSp SINE Alu -1 312 1 2765 159 20 70 chrY 4877615 4877963 -19835116 - MER1A DNA MER1_type -2317 383 69 2940 13 0 0 chrY 4877963 4878281 -19834798 - AluYb8 SINE Alu 0 318 1 2765 159 20 70 chrY 4878281 4878347 -19834732 - MER1A DNA MER1_type -2631 69 1 467 179 0 0 chrY 4878726 4878810 -19834269 - MER4B LTR ERV1 -163 447 364 23 0 0 0 chrY 4878822 4878845 -19834234 + AT_rich Low_complexity Low_complexity 1 23 0 302 248 50 0 chrY 4878847 4878948 -19834131 + CT-rich Low_complexity Low_complexity 3 108 0 375 182 23 45 chrY 4878969 4879145 -19833934 + CT-rich Low_complexity Low_complexity 3 174 0 1483 186 65 4 chrY 4879745 4880020 -19833059 - AluSx SINE Alu -19 293 2 234 302 50 36 chrY 4880027 4880166 -19832913 + LTR16C LTR ERVL 349 489 -2 2634 106 5 13 chrY 4880412 4880790 -19832289 + THE1C LTR MaLR 1 375 0 235 375 0 32 chrY 4880845 4881061 -19832018 + L1P LINE L1 4884 5092 -1054 278 296 61 64 chrY 4881265 4881610 -19831469 + L1ME LINE L1 5317 5660 -502 555 302 65 42 chrY 4881948 4882256 -19830823 + L2 LINE L2 2995 3309 -4 397 0 0 0 chrY 4882508 4882552 -19830527 + (TTTA)n Simple_repeat Simple_repeat 2 156 0 1369 149 0 9 chrY 4882552 4882767 -19830312 - AluSg/x SINE Alu -1 326 71 13787 135 11 23 chrY 4882767 4885396 -19827683 + L1P3 LINE L1 671 3284 -3177 586 126 29 58 chrY 4885596 4885699 -19827380 + AluS SINE Alu 1 100 -212 698 264 44 0 chrY 4886111 4886293 -19826786 - MER20 DNA MER1_type 0 219 30 2439 139 25 5 chrY 4887104 4887472 -19825607 - THE1C LTR MaLR 0 375 1 2011 121 55 0 chrY 4888644 4888933 -19824146 - AluSx SINE Alu -4 308 4 2013 187 19 8 chrY 4889068 4889427 -19823652 - MLT1A1 LTR MaLR -2 363 1 2012 164 0 0 chrY 4889843 4890155 -19822924 - AluSx SINE Alu 0 312 1 245 29 29 0 chrY 4890489 4890523 -19822556 + (TAA)n Simple_repeat Simple_repeat 2 36 0 1802 150 0 33 chrY 4891736 4892043 -19821036 + AluJo SINE Alu 13 309 -3 993 219 24 5 chrY 4892768 4892978 -19820101 + AluJb SINE Alu 73 286 -26 341 236 19 19 chrY 4892978 4893135 -19819944 + (TA)n Simple_repeat Simple_repeat 2 158 0 293 231 7 0 chrY 4893156 4893303 -19819776 + (TA)n Simple_repeat Simple_repeat 1 148 0 21 0 0 0 chrY 4893351 4893372 -19819707 + AT_rich Low_complexity Low_complexity 1 21 0 407 108 0 83 chrY 4895355 4895512 -19817567 + (TA)n Simple_repeat Simple_repeat 2 145 0 1308 180 47 77 chrY 4895529 4895651 -19817428 + AluJo SINE Alu 1 125 -187 1937 156 0 10 chrY 4895651 4895958 -19817121 - AluSg SINE Alu -6 304 1 1308 180 47 77 chrY 4895958 4896135 -19816944 + AluJo SINE Alu 125 291 -21 509 174 0 31 chrY 4896307 4896405 -19816674 + L1PB4 LINE L1 6058 6152 -4 668 224 85 13 chrY 4896902 4896924 -19816155 - MLT1A1 LTR MaLR 0 390 371 2277 134 64 0 chrY 4896924 4897266 -19815813 - THE1B LTR MaLR 0 364 1 668 224 85 13 chrY 4897266 4897441 -19815638 - MLT1A1 LTR MaLR -19 371 178 345 82 0 0 chrY 4897441 4897490 -19815589 + (GA)n Simple_repeat Simple_repeat 1 49 0 1019 250 51 46 chrY 4897518 4897889 -19815190 + MLT2B1 LTR ERVL 3 428 -92 708 178 59 15 chrY 4897889 4898024 -19815055 - AluJo SINE Alu -49 263 123 300 274 118 0 chrY 4898073 4898175 -19814904 + L2 LINE L2 3197 3310 -3 296 277 42 25 chrY 4898461 4898580 -19814499 - MLT1H LTR MaLR 0 549 429 * 484 236 18 0 chrY 4898575 4898685 -19814394 + MER20 DNA MER1_type 90 201 -18 237 152 22 0 chrY 4898741 4898787 -19814292 + T-rich Low_complexity Low_complexity 3 49 0 568 173 19 10 chrY 4898787 4898891 -19814188 - U6 snRNA snRNA -2 105 1 427 312 27 25 chrY 4899116 4899340 -19813739 - MLT1H LTR MaLR -3 548 321 651 208 92 82 chrY 4899362 4899665 -19813414 + MLT1H1 LTR MaLR 242 547 -8 191 222 93 0 chrY 4900910 4900964 -19812115 - L2 LINE L2 0 3313 3255 500 126 29 46 chrY 4901424 4901599 -19811480 + (TAGA)n Simple_repeat Simple_repeat 3 174 0 343 187 23 41 chrY 4901649 4901820 -19811259 + (TAGA)n Simple_repeat Simple_repeat 3 170 0 1419 138 14 0 chrY 4901998 4902215 -19810864 + L1MA7 LINE L1 5682 5901 -390 1465 48 4 83 chrY 4902215 4902445 -19810634 - LTR66 LTR ERVL 0 610 399 255 0 86 74 chrY 4902455 4902536 -19810543 + (TA)n Simple_repeat Simple_repeat 2 83 0 2610 107 85 17 chrY 4902543 4902954 -19810125 - LTR66 LTR ERVL -168 442 4 672 226 45 6 chrY 4903012 4903189 -19809890 - MER20 DNA MER1_type -6 213 30 623 259 0 0 chrY 4903331 4903462 -19809617 + FLAM_A SINE Alu 1 131 -2 1406 185 83 4 chrY 4903465 4903741 -19809338 + AluJb SINE Alu 1 298 -14 7411 161 25 10 chrY 4903741 4904994 -19808085 + L1PA5 LINE L1 2 1274 -4872 * 20523 66 3 1 chrY 4904985 4909543 -19803536 + L1PA5 LINE L1 1490 6151 -3 3954 148 21 14 chrY 4909685 4910314 -19802765 + MER41B LTR ERV1 1 633 -2 1526 184 0 53 chrY 4910722 4910915 -19802164 - AluJo SINE Alu -9 303 132 2069 118 0 39 chrY 4910915 4911221 -19801858 + AluY SINE Alu 5 298 -13 1526 184 0 53 chrY 4911221 4911347 -19801732 - AluJo SINE Alu -180 132 1 1875 194 20 17 chrY 4911356 4911759 -19801320 - L1MA3 LINE L1 0 6305 5902 1995 141 35 55 chrY 4911782 4912001 -19801078 - L1PB3 LINE L1 0 6154 5943 1797 168 0 3 chrY 4912001 4912287 -19800792 - AluJb SINE Alu -23 289 5 1995 141 35 55 chrY 4912287 4912415 -19800664 - L1PB3 LINE L1 -211 5943 5814 756 226 83 6 chrY 4912442 4912623 -19800456 + MER20 DNA MER1_type 25 219 0 1693 173 53 0 chrY 4912628 4912911 -19800168 + AluSq SINE Alu 1 298 -15 1520 193 48 34 chrY 4913102 4913234 -19799845 - L1MA9 LINE L1 0 6312 6183 1971 145 7 3 chrY 4913234 4913531 -19799548 - AluSq SINE Alu -15 298 1 1520 193 48 34 chrY 4913531 4913756 -19799323 - L1MA9 LINE L1 -129 6183 5950 * 1731 188 3 87 chrY 4913753 4914289 -19798790 + L1MA9 LINE L1 4926 5419 -805 2166 137 0 13 chrY 4914289 4914604 -19798475 + AluSx SINE Alu 2 312 0 1731 188 3 87 chrY 4914604 4914663 -19798416 + L1MA9 LINE L1 5419 5481 -743 412 240 29 0 chrY 4915003 4915107 -19797972 + L1MA9 LINE L1 6019 6125 -187 * 516 116 0 23 chrY 4915095 4915181 -19797898 + L1PB1 LINE L1 5708 5791 -360 207 0 0 0 chrY 4915186 4915209 -19797870 + (GA)n Simple_repeat Simple_repeat 2 24 0 739 152 0 0 chrY 4915210 4915315 -19797764 - AluSq/x SINE Alu -202 111 7 2503 133 3 3 chrY 4915320 4915688 -19797391 + L1PB1 LINE L1 5782 6149 -2 570 257 22 28 chrY 4915718 4915897 -19797182 + L1MA9 LINE L1 6097 6274 -38 1617 184 13 25 chrY 4915920 4916236 -19796843 + AluJo SINE Alu 1 312 0 207 0 0 0 chrY 4916963 4916986 -19796093 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 3075 72 2 25 chrY 4917125 4917528 -19795551 - L1PA10 LINE L1 -294 5874 5481 1350 98 62 0 chrY 4917533 4917726 -19795353 + L1PA10 LINE L1 5960 6164 -4 2422 58 0 7 chrY 4917963 4918257 -19794822 - AluY SINE Alu -17 294 3 189 0 0 0 chrY 4918263 4918284 -19794795 + (T)n Simple_repeat Simple_repeat 1 21 0 1699 233 6 0 chrY 4918284 4918640 -19794439 + L1MB5 LINE L1 5816 6173 -1 1765 160 4 4 chrY 4918647 4918949 -19794130 + AluSx SINE Alu 1 302 0 1181 88 0 11 chrY 4919027 4919209 -19793870 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 685 157 7 14 chrY 4919214 4919354 -19793725 + CT-rich Low_complexity Low_complexity 4 142 0 552 126 0 0 chrY 4920266 4920353 -19792726 + (GGGA)n Simple_repeat Simple_repeat 4 90 0 1713 177 17 20 chrY 4920814 4921114 -19791965 - AluJo SINE Alu -6 306 8 1899 177 0 3 chrY 4921132 4921431 -19791648 - AluSx SINE Alu -14 298 1 842 167 20 13 chrY 4921436 4921586 -19791493 - MLT1A1 LTR MaLR -214 151 1 1564 190 4 14 chrY 4922195 4922474 -19790605 - AluJb SINE Alu -24 288 13 2618 134 14 0 chrY 4923216 4923574 -19789505 + THE1B LTR MaLR 1 363 -1 804 249 31 52 chrY 4923961 4924190 -19788889 - MER58A DNA MER1_type 0 224 1 2089 125 0 0 chrY 4924231 4924539 -19788540 + AluSc SINE Alu 1 308 0 2167 170 40 5 chrY 4924695 4925072 -19788007 + MLT1B LTR MaLR 1 390 0 423 0 0 0 chrY 4926182 4926229 -19786850 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1848 158 29 0 chrY 4926231 4926510 -19786569 - AluSx SINE Alu -24 288 2 1543 204 3 13 chrY 4927147 4927451 -19785628 + AluJo SINE Alu 1 301 -11 201 94 0 0 chrY 4927524 4927556 -19785523 + (TTAA)n Simple_repeat Simple_repeat 3 34 0 897 174 0 43 chrY 4927556 4927643 -19785436 - AluJo SINE Alu -28 284 203 4038 70 63 4 chrY 4927643 4928170 -19784909 + LTR6B LTR ERV1 1 558 0 897 174 0 43 chrY 4928170 4928235 -19784844 - AluJo SINE Alu -109 203 137 863 207 61 15 chrY 4928304 4928502 -19784577 + MLT1D LTR MaLR 29 235 -270 372 148 11 66 chrY 4928502 4928685 -19784394 + (CAGAGA)n Simple_repeat Simple_repeat 2 174 0 503 179 0 13 chrY 4928742 4928893 -19784186 + (CAGAGA)n Simple_repeat Simple_repeat 2 150 0 241 200 52 52 chrY 4928900 4929015 -19784064 + MLT1D LTR MaLR 180 294 -211 1133 90 26 0 chrY 4929015 4929170 -19783909 + AluY SINE Alu 136 294 -17 1004 151 39 11 chrY 4929185 4929364 -19783715 - LTR43 LTR ERV1 -388 214 31 183 204 0 0 chrY 4930019 4930068 -19783011 + C-rich Low_complexity Low_complexity 4 52 0 584 162 30 0 chrY 4930068 4930167 -19782912 - FRAM SINE Alu -5 171 70 1838 145 37 0 chrY 4930216 4930513 -19782566 + Tigger3(Golem) DNA MER2_type 2721 3028 -1 1868 209 37 0 chrY 4930528 4930878 -19782201 + MLT1A1 LTR MaLR 3 365 0 378 221 0 13 chrY 4931926 4932003 -19781076 - LTR45B LTR ERV1 -390 99 24 29 37 0 19 chrY 4932361 4932395 -19780684 + AT_rich Low_complexity Low_complexity 1 35 -18 927 150 0 0 chrY 4932395 4932528 -19780551 - AluJo SINE Alu -169 133 1 29 37 0 19 chrY 4932528 4932547 -19780532 + AT_rich Low_complexity Low_complexity 35 53 0 306 315 0 11 chrY 4932725 4932817 -19780262 - L1MC4 LINE L1 -1335 6707 6617 2183 172 36 90 chrY 4932817 4933318 -19779761 + LTR45B LTR ERV1 6 479 -10 22 0 0 0 chrY 4933935 4933957 -19779122 + AT_rich Low_complexity Low_complexity 1 22 0 280 245 19 0 chrY 4934851 4934957 -19778122 + CT-rich Low_complexity Low_complexity 1 108 0 1365 219 28 15 chrY 4935279 4935604 -19777475 + L1MC3 LINE L1 7295 7623 -162 399 163 0 0 chrY 4935605 4935685 -19777394 + (ATG)n Simple_repeat Simple_repeat 1 80 0 * 918 126 6 27 chrY 4935683 4935866 -19777213 + (ATGGTG)n Simple_repeat Simple_repeat 1 179 0 278 173 62 37 chrY 4936100 4936181 -19776898 - MLT1J LTR MaLR -358 153 71 964 202 66 141 chrY 4936495 4936921 -19776158 + MSTD LTR MaLR 1 394 -2 195 42 0 0 chrY 4938196 4938220 -19774859 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 979 175 32 5 chrY 4939185 4939374 -19773705 + L1PA16 LINE L1 5964 6157 -9 370 261 39 15 chrY 4939426 4939556 -19773523 + MLT1D LTR MaLR 6 138 -367 440 308 15 0 chrY 4939915 4940045 -19773034 + MLT1D LTR MaLR 302 433 -72 1856 162 0 14 chrY 4940201 4940497 -19772582 + AluJo SINE Alu 3 294 -18 1299 203 11 39 chrY 4940653 4940934 -19772145 + AluJo SINE Alu 1 273 -39 210 37 0 0 chrY 4940934 4940961 -19772118 + (TC)n Simple_repeat Simple_repeat 1 27 0 298 280 15 23 chrY 4941811 4941943 -19771136 + (TCTA)n Simple_repeat Simple_repeat 3 133 0 349 117 51 36 chrY 4941954 4942091 -19770988 + (TCTA)n Simple_repeat Simple_repeat 4 142 0 451 130 56 25 chrY 4942103 4942265 -19770814 + (TCTA)n Simple_repeat Simple_repeat 4 170 0 2634 129 4 75 chrY 4943078 4943161 -19769918 - Tigger2a DNA MER2_type -2275 433 346 1710 127 70 0 chrY 4943161 4943420 -19769659 + AluSq SINE Alu 22 298 -15 2634 129 4 75 chrY 4943420 4943801 -19769278 - Tigger2a DNA MER2_type -2362 346 2 225 0 0 0 chrY 4944160 4944185 -19768894 + (TG)n Simple_repeat Simple_repeat 2 26 0 668 106 43 6 chrY 4944269 4944430 -19768649 + (TAGA)n Simple_repeat Simple_repeat 1 167 0 40 49 0 0 chrY 4945031 4945092 -19767987 + AT_rich Low_complexity Low_complexity 1 61 0 1115 142 0 0 chrY 4945092 4945254 -19767825 - AluSq SINE Alu -17 296 135 28 109 0 0 chrY 4945539 4945658 -19767421 + AT_rich Low_complexity Low_complexity 1 119 0 184 86 69 17 chrY 4945666 4945724 -19767355 + (TATAA)n Simple_repeat Simple_repeat 5 65 0 22 0 0 0 chrY 4945738 4945760 -19767319 + AT_rich Low_complexity Low_complexity 1 22 0 1380 113 9 14 chrY 4945760 4945982 -19767097 - Tigger2 DNA MER2_type -146 2572 2352 335 141 86 31 chrY 4946019 4946182 -19766897 + (TA)n Simple_repeat Simple_repeat 1 172 0 382 188 28 61 chrY 4946188 4946369 -19766710 + (TTATA)n Simple_repeat Simple_repeat 5 179 0 226 207 73 24 chrY 4946395 4946477 -19766602 + HSMAR1 DNA Mariner 1 86 -1201 226 218 61 14 chrY 4946477 4946624 -19766455 + (TTATA)n Simple_repeat Simple_repeat 1 154 0 217 318 39 39 chrY 4946752 4946906 -19766173 + L2 LINE L2 2633 2786 -528 1451 159 28 0 chrY 4947351 4947603 -19765476 - L1MA4A LINE L1 0 6303 6045 3498 108 4 16 chrY 4947761 4948263 -19764816 + MER1A DNA MER1_type 34 529 0 1945 163 3 0 chrY 4948649 4948956 -19764123 - AluSx SINE Alu -4 308 1 1301 148 13 0 chrY 4949344 4949573 -19763506 - MLT1B LTR MaLR 0 390 159 1152 157 10 12 chrY 4949574 4949791 -19763288 - MLT1B LTR MaLR 0 467 175 10197 89 8 0 chrY 4949927 4952012 -19761067 - L1PA5 LINE L1 -4 6150 4041 24121 107 14 14 chrY 4952012 4955696 -19757383 - L1P LINE L1 -1678 4468 11 6836 99 2 62 chrY 4955959 4957202 -19755877 - L1PA7 LINE L1 -6 6148 4932 1350 221 78 7 chrY 4957389 4957554 -19755525 - AluJo SINE Alu 0 302 107 189 0 0 0 chrY 4957554 4957575 -19755504 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 1350 221 78 7 chrY 4957575 4957690 -19755389 - AluJo SINE Alu -195 107 2 1053 166 6 11 chrY 4958400 4958581 -19754498 + AluJo SINE Alu 1 180 -132 2624 141 9 19 chrY 4958799 4959219 -19753860 + L1PB4 LINE L1 5739 6154 -2 224 342 0 0 chrY 4959485 4959561 -19753518 - MER5A DNA MER1_type -84 105 30 281 215 11 65 chrY 4959597 4959690 -19753389 - MER3 DNA MER1_type -1 208 121 603 209 72 0 chrY 4959717 4959870 -19753209 - MER3 DNA MER1_type -44 165 2 474 270 106 86 chrY 4960412 4960819 -19752260 - MLT1J2 LTR MaLR -11 439 25 680 335 48 15 chrY 4960854 4961235 -19751844 + L1ME3A LINE L1 5497 5893 -277 2035 167 21 11 chrY 4961875 4962247 -19750832 + L1MA7 LINE L1 5841 6216 -75 1932 155 0 0 chrY 4962248 4962538 -19750541 + AluSx SINE Alu 1 290 -22 813 177 0 43 chrY 4962549 4962735 -19750344 + L1MA7 LINE L1 6114 6291 0 592 200 33 16 chrY 4962891 4963098 -19749981 - MLT2B1 LTR ERVL -95 425 269 532 238 42 8 chrY 4963076 4963251 -19749828 - MLT2B1 LTR ERVL -123 397 267 * 602 219 21 141 chrY 4963226 4963468 -19749611 - MLT2B1 LTR ERVL -130 390 178 955 51 0 0 chrY 4963483 4963601 -19749478 - L1P5 LINE L1 -471 5680 5563 619 215 25 19 chrY 4963676 4963834 -19749245 - MLT2D LTR ERVL -255 159 1 220 231 39 0 chrY 4963834 4963886 -19749193 + (CATG)n Simple_repeat Simple_repeat 2 55 0 3527 154 2 9 chrY 4965563 4966094 -19746985 - MER1A DNA MER1_type 0 527 1 664 272 85 13 chrY 4966124 4966348 -19746731 + MLT1C LTR MaLR 218 457 -10 201 74 0 0 chrY 4966348 4966375 -19746704 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 393 203 16 8 chrY 4967159 4967282 -19745797 + CT-rich Low_complexity Low_complexity 3 126 0 690 143 9 9 chrY 4967294 4967399 -19745680 - AluSq/x SINE Alu -205 107 3 606 23 34 0 chrY 4967419 4967507 -19745572 + (TA)n Simple_repeat Simple_repeat 1 91 0 187 118 0 39 chrY 4967541 4967592 -19745487 + (TAA)n Simple_repeat Simple_repeat 2 50 0 * 274 182 34 23 chrY 4967586 4967762 -19745317 + (TATAA)n Simple_repeat Simple_repeat 2 179 0 293 190 34 62 chrY 4967797 4967976 -19745103 + (TATAA)n Simple_repeat Simple_repeat 5 178 0 2063 152 3 0 chrY 4967978 4968287 -19744792 + AluSx SINE Alu 1 310 -2 1856 206 33 23 chrY 4968302 4968729 -19744350 + L1MA8 LINE L1 5836 6266 -25 1965 151 28 0 chrY 4968867 4969158 -19743921 + AluSx SINE Alu 1 299 -13 321 300 132 21 chrY 4969356 4969599 -19743480 - MER97b DNA MER1_type? -735 318 49 233 232 0 0 chrY 4969650 4969706 -19743373 + T-rich Low_complexity Low_complexity 1 56 0 189 0 0 0 chrY 4969740 4969761 -19743318 + (TA)n Simple_repeat Simple_repeat 1 21 0 21 0 0 0 chrY 4969761 4969782 -19743297 + AT_rich Low_complexity Low_complexity 1 21 0 1946 171 0 0 chrY 4969782 4970091 -19742988 + AluSx SINE Alu 1 309 -3 1621 135 0 0 chrY 4970144 4970374 -19742705 + AluSg/x SINE Alu 69 298 -14 515 157 45 0 chrY 4970374 4970463 -19742616 - L1MA5A LINE L1 -12 6285 6193 1704 166 35 7 chrY 4970732 4971016 -19742063 + AluJo SINE Alu 1 292 -20 765 179 22 22 chrY 4971272 4971406 -19741673 + AluJo SINE Alu 3 136 -176 243 0 0 0 chrY 4972059 4972086 -19740993 + (T)n Simple_repeat Simple_repeat 1 27 0 2100 177 111 2 chrY 4973950 4974363 -19738716 + L1PA16 LINE L1 5708 6165 -1 203 370 4 0 chrY 4974652 4974739 -19738340 - MIR SINE MIR -74 134 45 595 181 23 12 chrY 4974839 4975010 -19738069 + CT-rich Low_complexity Low_complexity 3 175 0 1541 215 3 14 chrY 4975031 4975319 -19737760 - AluJo SINE Alu -15 287 3 894 194 6 0 chrY 4975324 4975489 -19737590 - L1M3 LINE L1 -554 5780 5615 3393 162 91 57 chrY 4975587 4976290 -19736789 - LTR8A LTR ERV1 0 727 1 1400 177 113 78 chrY 4976322 4976757 -19736322 + LTR7 LTR ERV1 1 450 0 14898 184 78 88 chrY 4976757 4980928 -19732151 + HERVH LTR ERV1 1 4125 -3588 2438 40 40 0 chrY 4980928 4981225 -19731854 - AluY SINE Alu -2 309 1 14898 184 78 88 chrY 4981225 4981648 -19731431 + HERVH LTR ERV1 4125 4551 -3162 1458 164 19 0 chrY 4981639 4981895 -19731184 + HERVH LTR ERV1 5756 6016 -1697 * 3869 106 5 5 chrY 4981888 4982445 -19730634 + HERVH LTR ERV1 7157 7713 0 1457 171 117 61 chrY 4982445 4982871 -19730208 + LTR7 LTR ERV1 1 450 0 1756 153 0 38 chrY 4982937 4983251 -19729828 - AluJo SINE Alu 0 312 11 21 36 0 0 chrY 4983771 4983799 -19729280 + AT_rich Low_complexity Low_complexity 1 28 0 226 219 195 49 chrY 4983950 4984032 -19729047 - MIR3 SINE MIR -5 203 110 1890 166 0 3 chrY 4984084 4984386 -19728693 - AluJb SINE Alu -11 301 1 2252 141 55 66 chrY 4984899 4984980 -19728099 + MER4E LTR ERV1 1 81 -698 2021 137 17 0 chrY 4984980 4985273 -19727806 + AluSx SINE Alu 1 298 -14 2252 141 55 66 chrY 4985273 4985812 -19727267 + MER4E LTR ERV1 81 779 0 11274 113 7 5 chrY 4985955 4987630 -19725449 - L1PA7 LINE L1 -1274 4872 3195 3198 118 27 1 chrY 4987629 4988246 -19724833 + L1PA7 LINE L1 4854 5489 -683 * 1591 112 21 156 chrY 4988247 4988351 -19724728 + AluYb8 SINE Alu 1 117 -201 4001 100 0 4 chrY 4988351 4988860 -19724219 + MER9 LTR ERVK 1 507 -4 1591 112 21 156 chrY 4988860 4989095 -19723984 + AluYb8 SINE Alu 117 294 -24 5029 79 39 17 chrY 4989095 4989756 -19723323 + L1PA7 LINE L1 5476 6151 -3 261 0 0 0 chrY 4990009 4990038 -19723041 + (CAAAA)n Simple_repeat Simple_repeat 3 31 0 2145 122 3 0 chrY 4990069 4990363 -19722716 + AluY SINE Alu 1 295 -16 363 154 0 0 chrY 4991232 4991297 -19721782 - L1MD2 LINE L1 -7 6352 6288 1661 163 7 7 chrY 4991297 4991567 -19721512 + AluSq SINE Alu 38 307 -6 937 138 28 44 chrY 4991584 4991648 -19721431 - L1MD1 LINE L1 -55 6187 6123 4568 120 16 2 chrY 4991648 4992274 -19720805 - MER41B LTR ERV1 0 635 1 937 138 28 44 chrY 4992274 4992390 -19720689 - L1MD1 LINE L1 -119 6123 6010 1297 225 77 20 chrY 4992534 4992574 -19720505 - MLT1A1 LTR MaLR 0 365 329 2281 147 30 22 chrY 4992574 4992935 -19720144 + THE1B LTR MaLR 1 364 0 1297 225 77 20 chrY 4992935 4993192 -19719887 - MLT1A1 LTR MaLR -36 329 51 2176 160 47 32 chrY 4993192 4993729 -19719350 - MLT2A2 LTR ERVL 0 554 1 302 185 62 15 chrY 4993729 4993785 -19719294 - MLT1A1 LTR MaLR -306 59 1 449 238 38 0 chrY 4994948 4995053 -19718026 - L1MA4A LINE L1 -259 6044 5936 743 151 0 24 chrY 4995055 4995206 -19717873 - AluJb SINE Alu 0 337 190 626 179 104 8 chrY 4995266 4995350 -19717729 + L1MA4A LINE L1 6084 6187 -116 1785 157 22 29 chrY 4995350 4995663 -19717416 + AluJo SINE Alu 1 311 -1 626 179 104 8 chrY 4995663 4995712 -19717367 + L1MA4A LINE L1 6187 6230 -73 1049 245 0 12 chrY 4996040 4996293 -19716786 + L1MA8 LINE L1 6042 6291 0 293 297 13 0 chrY 4996349 4996653 -19716426 + (TA)n Simple_repeat Simple_repeat 1 308 0 260 268 0 7 chrY 4996672 4996810 -19716269 + (TA)n Simple_repeat Simple_repeat 1 137 0 257 347 0 0 chrY 4996821 4996919 -19716160 + (TA)n Simple_repeat Simple_repeat 2 99 0 270 43 0 130 chrY 4997563 4997576 -19715503 + L1P4 LINE L1 5729 5742 -426 2038 157 13 46 chrY 4997576 4997762 -19715317 + THE1C LTR MaLR 1 169 -206 1916 142 3 3 chrY 4997762 4998057 -19715022 + AluSq SINE Alu 1 295 -18 2038 157 13 46 chrY 4998057 4998258 -19714821 + THE1C LTR MaLR 169 375 0 270 43 0 130 chrY 4998258 4998290 -19714789 + L1P4 LINE L1 5742 5768 -400 2119 112 78 6 chrY 4998292 4998614 -19714465 + L1PA13 LINE L1 5819 6163 0 894 100 0 0 chrY 4998731 4998851 -19714228 - AluSg/x SINE Alu -3 306 187 1384 176 4 12 chrY 4999398 4999642 -19713437 + AluJb SINE Alu 68 309 -3 26 30 0 0 chrY 4999696 4999729 -19713350 + AT_rich Low_complexity Low_complexity 1 33 0 375 23 0 0 chrY 4999880 4999924 -19713155 + (TG)n Simple_repeat Simple_repeat 1 44 0 1803 158 54 6 chrY 5000006 5000341 -19712738 + MLT1A1 LTR MaLR 15 365 0 12382 32 1 1 chrY 5000492 5001969 -19711110 - L1PA3 LINE L1 -1845 4301 2825 3826 32 7 0 chrY 5001966 5002429 -19710650 + L1PA3 LINE L1 4317 4782 -1364 * 6080 22 5 1 chrY 5002429 5003099 -19709980 + L1PA3 LINE L1 5483 6155 0 198 0 0 0 chrY 5004260 5004282 -19708797 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 707 100 158 0 chrY 5005750 5005870 -19707209 - MER85 DNA T2_type 0 139 1 1373 183 0 0 chrY 5006212 5006463 -19706616 - L1MA4 LINE L1 -11 6289 6039 751 260 39 0 chrY 5006783 5006964 -19706115 + L1MB5 LINE L1 5950 6137 -37 2015 206 24 81 chrY 5006970 5007465 -19705614 + MLT1C LTR MaLR 1 467 0 667 285 80 75 chrY 5007529 5007981 -19705098 - L2 LINE L2 -889 2425 1972 327 25 0 0 chrY 5008249 5008289 -19704790 + (GA)n Simple_repeat Simple_repeat 1 40 0 764 240 29 0 chrY 5008315 5008486 -19704593 - MSTD LTR MaLR -218 178 3 2239 87 22 26 chrY 5008660 5008972 -19704107 - AluY SINE Alu 0 311 1 1720 204 38 0 chrY 5009621 5009940 -19703139 - MER2 DNA MER2_type -14 331 1 200 267 13 53 chrY 5010299 5010374 -19702705 - MIR SINE MIR -115 147 76 1463 302 93 24 chrY 5010468 5011018 -19702061 - MLT1E LTR MaLR -2 591 4 221 0 0 33 chrY 5011051 5011081 -19701998 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 832 200 38 5 chrY 5011880 5012065 -19701014 - MER20 DNA MER1_type -26 193 3 369 110 71 24 chrY 5012071 5012198 -19700881 + (TAGA)n Simple_repeat Simple_repeat 2 134 0 493 126 58 27 chrY 5012215 5012581 -19700498 + (TAGA)n Simple_repeat Simple_repeat 1 377 0 497 107 40 27 chrY 5012603 5012752 -19700327 + (TAGA)n Simple_repeat Simple_repeat 1 151 0 894 174 67 0 chrY 5012769 5012947 -19700132 - MER20 DNA MER1_type 0 219 30 1254 214 80 48 chrY 5013566 5013917 -19699162 + MLT1A1 LTR MaLR 1 362 -3 3291 209 20 50 chrY 5014130 5014702 -19698377 + L1MA9 LINE L1 5459 5999 -313 3303 152 17 26 chrY 5014702 5015234 -19697845 - MER1A DNA MER1_type 0 527 1 3291 209 20 50 chrY 5015234 5015509 -19697570 + L1MA9 LINE L1 5999 6281 -31 439 223 58 19 chrY 5015663 5015766 -19697313 + L2 LINE L2 3152 3258 -14 1418 270 15 28 chrY 5016557 5016949 -19696130 + L1MB5 LINE L1 5748 6117 -66 1878 168 0 0 chrY 5016949 5017234 -19695845 - AluSx SINE Alu -21 291 7 1418 270 15 28 chrY 5017234 5017299 -19695780 + L1MB5 LINE L1 6117 6181 -2 2227 109 3 0 chrY 5017310 5017612 -19695467 + AluY SINE Alu 1 303 -8 976 178 11 83 chrY 5017932 5018196 -19694883 - MER66B LTR ERV1 -2 484 240 791 211 206 10 chrY 5018313 5018512 -19694567 - MER66B LTR ERV1 -240 246 9 2045 113 0 10 chrY 5018835 5019126 -19693953 - MER1A DNA MER1_type 0 529 242 237 208 0 0 chrY 5019242 5019295 -19693784 - LTR66 LTR ERVL -164 446 394 233 132 38 19 chrY 5019295 5019348 -19693731 + (TA)n Simple_repeat Simple_repeat 2 55 0 1565 185 0 0 chrY 5020593 5020874 -19692205 - L1 LINE L1 -1136 5010 4730 253 267 27 27 chrY 5020950 5021025 -19692054 - L2 LINE L2 0 3272 3198 2524 27 40 0 chrY 5021700 5021996 -19691083 + AluY SINE Alu 1 308 -3 714 98 40 29 chrY 5023190 5023363 -19689716 + (TAGA)n Simple_repeat Simple_repeat 3 177 0 853 223 30 128 chrY 5023903 5024220 -19688859 - MLT1A2 LTR MaLR -5 370 24 2855 106 3 3 chrY 5024220 5024580 -19688499 - THE1B LTR MaLR -1 363 4 853 223 30 128 chrY 5024580 5024605 -19688474 - MLT1A2 LTR MaLR -351 24 94 2120 144 101 29 chrY 5024605 5024981 -19688098 + MER57A LTR ERV1 1 403 0 853 223 30 128 chrY 5024981 5025063 -19688016 - MLT1A2 LTR MaLR -280 95 7 186 103 0 0 chrY 5025169 5025198 -19687881 + (A)n Simple_repeat Simple_repeat 1 29 0 225 94 0 0 chrY 5025240 5025272 -19687807 + (T)n Simple_repeat Simple_repeat 1 32 0 2430 74 20 0 chrY 5025490 5025787 -19687292 + AluY SINE Alu 1 303 -8 438 75 0 0 chrY 5026373 5026426 -19686653 - Alu SINE Alu -258 53 1 469 251 2 8 chrY 5026426 5026558 -19686521 - L1M4 LINE L1 -1074 5072 4941 481 288 24 0 chrY 5026717 5026887 -19686192 + (TATG)n Simple_repeat Simple_repeat 1 174 0 411 366 6 0 chrY 5026837 5027012 -19686067 + (TG)n Simple_repeat Simple_repeat 1 176 0 * 248 244 12 35 chrY 5027030 5027202 -19685877 + (TATG)n Simple_repeat Simple_repeat 4 171 0 423 305 0 13 chrY 5027214 5027368 -19685711 + (TATG)n Simple_repeat Simple_repeat 4 155 0 2483 135 17 11 chrY 5028066 5028428 -19684651 + THE1B LTR MaLR 1 364 0 200 108 0 27 chrY 5029577 5029614 -19683465 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 728 198 37 119 chrY 5029663 5029832 -19683247 - MLT2B2 LTR ERVL 0 515 370 1962 162 35 54 chrY 5029832 5030202 -19682877 + THE1B LTR MaLR 2 364 0 728 198 37 119 chrY 5030202 5030275 -19682804 - MLT2B2 LTR ERVL -145 370 293 7936 171 12 34 chrY 5030452 5031723 -19681356 + L1P3 LINE L1 2 1253 -5208 210 91 0 0 chrY 5031723 5031756 -19681323 + (CAA)n Simple_repeat Simple_repeat 1 33 0 7936 171 12 34 chrY 5031756 5032883 -19680196 + L1P3 LINE L1 1253 2403 -4058 334 157 0 0 chrY 5032891 5032942 -19680137 - L1MA8 LINE L1 -423 5868 5818 247 83 28 0 chrY 5032964 5033000 -19680079 - MER75 DNA T2_type -4 510 474 587 140 40 0 chrY 5033031 5033131 -19679948 - L1MA8 LINE L1 -496 5816 5713 311 315 18 0 chrY 5033133 5033244 -19679835 - MER5A DNA MER1_type -74 115 3 481 333 0 0 chrY 5033775 5033955 -19679124 + (CA)n Simple_repeat Simple_repeat 1 180 0 360 304 0 4 chrY 5033978 5034459 -19678620 + (CA)n Simple_repeat Simple_repeat 1 478 0 315 274 0 0 chrY 5034509 5034684 -19678395 + (CA)n Simple_repeat Simple_repeat 2 176 0 183 262 0 0 chrY 5034735 5034842 -19678237 + (CA)n Simple_repeat Simple_repeat 2 108 0 236 270 7 0 chrY 5034865 5035002 -19678077 + (CA)n Simple_repeat Simple_repeat 2 139 0 242 269 0 8 chrY 5035030 5035160 -19677919 + (CA)n Simple_repeat Simple_repeat 1 129 0 271 316 7 22 chrY 5035173 5035309 -19677770 + (CATATA)n Simple_repeat Simple_repeat 1 134 0 * 360 295 17 17 chrY 5035212 5035385 -19677694 + (CATA)n Simple_repeat Simple_repeat 4 176 0 222 232 27 0 chrY 5035402 5035514 -19677565 + (CA)n Simple_repeat Simple_repeat 2 116 0 3960 78 26 36 chrY 5038057 5038662 -19674417 + L1PB1 LINE L1 5550 6148 -3 785 181 123 13 chrY 5039120 5039275 -19673804 + AluJo SINE Alu 1 172 -140 1690 111 4 25 chrY 5039277 5039512 -19673567 - AluSq SINE Alu -83 230 1 351 0 0 0 chrY 5039936 5039975 -19673104 + (TG)n Simple_repeat Simple_repeat 1 39 0 2098 193 3 0 chrY 5040031 5040420 -19672659 - MLT1B LTR MaLR 0 390 1 4847 163 8 6 chrY 5040992 5041970 -19671109 + L1PA16 LINE L1 5170 6150 -16 2304 136 5 19 chrY 5042409 5042778 -19670301 - THE1B LTR MaLR 0 364 1 26 50 0 0 chrY 5043085 5043125 -19669954 + AT_rich Low_complexity Low_complexity 1 40 0 3595 121 8 25 chrY 5043589 5043661 -19669418 + L1PA14 LINE L1 5535 5607 -554 1752 171 0 17 chrY 5043661 5043989 -19669090 + AluSx SINE Alu 1 323 0 3595 121 8 25 chrY 5043989 5044521 -19668558 + L1PA14 LINE L1 5607 6130 -31 6205 90 9 0 chrY 5044527 5045394 -19667685 + L1PA6 LINE L1 5280 6154 0 204 270 157 78 chrY 5045494 5045698 -19667381 - MIR SINE MIR -10 252 33 195 42 0 0 chrY 5045739 5045763 -19667316 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 39144 47 23 1 chrY 5045789 5051806 -19661273 - L1PA3 LINE L1 -4 6151 1 1365 232 10 7 chrY 5051826 5052115 -19660964 - AluJb SINE Alu -22 290 1 559 188 72 68 chrY 5052498 5052705 -19660374 + MER3 DNA MER1_type 1 208 -1 2150 176 38 24 chrY 5052857 5053282 -19659797 + Tigger2a DNA MER2_type 1 431 -3 219 376 47 0 chrY 5053445 5053530 -19659549 + L2 LINE L2 3167 3255 -17 1003 120 0 22 chrY 5053547 5053730 -19659349 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 743 261 31 0 chrY 5053781 5053976 -19659103 + MLT2B1 LTR ERVL 1 201 -319 1429 104 0 0 chrY 5053981 5054192 -19658887 - L1P3 LINE L1 -4839 1622 1412 2245 282 42 55 chrY 5054757 5055890 -19657189 + L1M3de LINE L1 286 2051 -4602 1843 152 6 22 chrY 5055927 5056243 -19656836 + AluSx SINE Alu 1 311 -1 1406 270 97 70 chrY 5056284 5057085 -19655994 + L1M2b LINE L1 15 837 -6372 805 259 13 76 chrY 5057057 5057451 -19655628 + L1M2b LINE L1 1564 1932 -5277 * 338 318 148 47 chrY 5057464 5057848 -19655231 - L1MEc LINE L1 -5918 478 56 1322 178 73 11 chrY 5058282 5058557 -19654522 - AluSg SINE Alu -17 293 2 319 56 37 0 chrY 5058559 5058613 -19654466 + (TAAAAA)n Simple_repeat Simple_repeat 2 57 0 2121 89 19 29 chrY 5058616 5058930 -19654149 + AluY SINE Alu 1 311 0 2463 65 7 0 chrY 5058962 5059294 -19653785 - AluY SINE Alu 0 334 1 1410 270 87 11 chrY 5059522 5060144 -19652935 - LTR65 LTR ERV1 0 669 1 1329 228 7 17 chrY 5060730 5061024 -19652055 + AluSx SINE Alu 1 291 -21 22 35 0 0 chrY 5061024 5061053 -19652026 + AT_rich Low_complexity Low_complexity 1 29 0 805 207 0 30 chrY 5061085 5061254 -19651825 - FRAM SINE Alu -6 170 7 288 0 0 0 chrY 5061258 5061290 -19651789 + (TG)n Simple_repeat Simple_repeat 2 33 0 316 334 59 59 chrY 5061344 5061700 -19651379 - HAL1b LINE L1 -689 659 304 334 268 12 0 chrY 5061862 5061944 -19651135 + L2 LINE L2 3231 3313 0 2217 108 0 25 chrY 5064290 5064606 -19648473 + AluY SINE Alu 1 308 -3 185 348 51 44 chrY 5065187 5065345 -19647734 + MIR SINE MIR 48 206 -56 398 321 0 0 chrY 5065424 5065564 -19647515 - MIR SINE MIR -25 237 98 1032 254 13 30 chrY 5066457 5066756 -19646323 - MLT1E LTR MaLR -2 591 298 1459 221 3 24 chrY 5066931 5067225 -19645854 + AluJo SINE Alu 1 288 -24 243 326 68 14 chrY 5067247 5067394 -19645685 - L2 LINE L2 -2521 793 639 347 359 33 22 chrY 5067448 5067632 -19645447 - L2 LINE L2 -2835 479 294 341 141 49 82 chrY 5067848 5068032 -19645047 + (TATATG)n Simple_repeat Simple_repeat 2 179 0 366 153 38 77 chrY 5068049 5068232 -19644847 + (TATATG)n Simple_repeat Simple_repeat 2 177 0 366 153 38 77 chrY 5068249 5068432 -19644647 + (TATATG)n Simple_repeat Simple_repeat 2 177 0 405 172 39 61 chrY 5068449 5068629 -19644450 + (TATATG)n Simple_repeat Simple_repeat 2 177 0 575 294 34 21 chrY 5068640 5068878 -19644201 - MLT1E LTR MaLR -192 275 35 207 0 0 0 chrY 5068879 5068902 -19644177 + (T)n Simple_repeat Simple_repeat 1 23 0 2119 99 0 3 chrY 5069637 5069941 -19643138 - AluY SINE Alu -8 303 1 27 29 0 0 chrY 5070127 5070161 -19642918 + AT_rich Low_complexity Low_complexity 1 34 0 233 225 28 70 chrY 5070691 5070762 -19642317 + MIR3 SINE MIR 103 170 -38 2080 103 6 44 chrY 5070871 5071191 -19641888 + AluY SINE Alu 3 310 -1 25 0 0 0 chrY 5071509 5071534 -19641545 + AT_rich Low_complexity Low_complexity 1 25 0 22 35 0 0 chrY 5071746 5071775 -19641304 + AT_rich Low_complexity Low_complexity 1 29 0 1280 183 17 101 chrY 5072364 5072769 -19640310 + MLT1B LTR MaLR 1 371 -19 263 360 30 0 chrY 5073558 5073658 -19639421 + MIR SINE MIR 30 132 -130 439 273 30 8 chrY 5073821 5073953 -19639126 - MIR3 SINE MIR -8 200 66 1852 156 17 3 chrY 5075004 5075306 -19637773 - AluSp SINE Alu -7 306 1 313 353 90 64 chrY 5075692 5076159 -19636920 + L2 LINE L2 2831 3309 -4 1269 153 9 0 chrY 5076267 5076483 -19636596 - LTR19B LTR ERV1 0 580 363 3056 113 17 4 chrY 5076490 5076970 -19636109 - LTR15 LTR ERV1 -7 486 1 1952 147 34 0 chrY 5076970 5077324 -19635755 - LTR19B LTR ERV1 -214 366 1 1258 147 4 31 chrY 5077325 5077550 -19635529 - LTR19B-int LTR ERV1 -1 5585 5367 * 1420 186 66 77 chrY 5077546 5077787 -19635292 - LTR19B-int LTR ERV1 -332 5254 5012 464 48 0 0 chrY 5077787 5077850 -19635229 + AluY SINE Alu 242 304 -5 1420 186 66 77 chrY 5077850 5078089 -19634990 - LTR19B-int LTR ERV1 -574 5012 4718 * 5057 210 37 1 chrY 5078084 5079330 -19633749 - LTR19B-int LTR ERV1 -422 5507 3336 455 242 46 36 chrY 5079359 5079578 -19633501 - LTR19B-int LTR ERV1 -3091 2126 1906 1127 109 0 0 chrY 5079580 5079736 -19633343 + AluY SINE Alu 146 301 -10 4545 148 29 18 chrY 5080166 5080991 -19632088 - LTR19B-int LTR ERV1 -3624 1962 1129 3981 163 8 34 chrY 5080977 5081856 -19631223 - LTR19B-int LTR ERV1 -6786 933 1 * 1644 137 14 11 chrY 5081856 5082140 -19630939 - LTR19B LTR ERV1 0 580 296 2220 99 12 0 chrY 5082141 5082485 -19630594 - THE1-int LTR MaLR -1232 348 1 39 68 0 0 chrY 5082788 5082862 -19630217 + AT_rich Low_complexity Low_complexity 1 74 0 677 311 33 36 chrY 5083193 5083498 -19629581 - MLT1J LTR MaLR -105 406 103 2045 140 0 0 chrY 5085146 5085439 -19627640 + AluSp SINE Alu 1 293 -20 382 250 29 0 chrY 5086915 5087051 -19626028 - L1M4 LINE L1 -1539 4607 4468 10137 130 28 6 chrY 5087643 5090151 -19622928 - L1PA7 LINE L1 -8 6146 3596 1818 186 0 3 chrY 5090151 5090463 -19622616 - AluSx SINE Alu -1 311 1 1057 106 0 0 chrY 5090644 5090786 -19622293 + AluY SINE Alu 163 304 -7 1239 166 16 93 chrY 5090887 5091200 -19621879 + MER52C LTR ERV1 990 1278 0 36 53 0 0 chrY 5091367 5091424 -19621655 + AT_rich Low_complexity Low_complexity 1 57 0 214 331 91 0 chrY 5092023 5092144 -19620935 - MIR SINE MIR -78 184 53 207 0 0 0 chrY 5092381 5092404 -19620675 + (T)n Simple_repeat Simple_repeat 1 23 0 417 321 95 34 chrY 5092543 5092839 -19620240 + L2 LINE L2 2418 2731 -583 578 232 7 21 chrY 5093098 5093240 -19619839 - MLT1D LTR MaLR -65 440 301 299 234 0 27 chrY 5093356 5093467 -19619612 - L1ME LINE L1 -5282 788 681 2906 187 25 3 chrY 5093865 5094433 -19618646 - LTR22 LTR ERVK 0 580 1 7525 184 9 6 chrY 5094434 5096395 -19616684 - HERVK22 LTR ERVK -2 6835 4770 4168 127 15 128 chrY 5096395 5097322 -19615757 - LTR12 LTR ERV1 0 826 5 2487 182 15 26 chrY 5097337 5097948 -19615131 - pTR5 LTR ERV1 -1093 1345 742 * 12188 166 2 15 chrY 5097947 5100502 -19612577 - HERVK22 LTR ERVK -2064 4773 2267 1796 183 30 158 chrY 5100502 5101142 -19611937 + LTR6A LTR ERV1 1 564 0 12840 163 3 7 chrY 5101142 5103377 -19609702 - HERVK22 LTR ERVK -4566 2271 46 3048 109 15 0 chrY 5103377 5104190 -19608889 - L1P2 LINE L1 -420 5734 4909 2878 155 29 39 chrY 5104787 5105349 -19607730 - LTR6A LTR ERV1 0 564 9 195 42 0 0 chrY 5105918 5105942 -19607137 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 2622 150 62 6 chrY 5107367 5107834 -19605245 - MER1A DNA MER1_type -6 523 31 2015 59 0 0 chrY 5108258 5108514 -19604565 + L1PA4 LINE L1 5899 6154 -1 22 56 0 0 chrY 5108726 5108762 -19604317 + AT_rich Low_complexity Low_complexity 1 36 0 465 204 0 0 chrY 5109449 5109581 -19603498 + CT-rich Low_complexity Low_complexity 1 132 0 207 364 8 8 chrY 5109995 5110116 -19602963 + (TTG)n Simple_repeat Simple_repeat 2 122 0 369 0 0 0 chrY 5110976 5111017 -19602062 + (CA)n Simple_repeat Simple_repeat 2 42 0 45 75 0 0 chrY 5111028 5111122 -19601957 + AT_rich Low_complexity Low_complexity 1 94 0 22 35 0 0 chrY 5111361 5111390 -19601689 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chrY 5111475 5111498 -19601581 + AT_rich Low_complexity Low_complexity 1 23 0 1572 197 11 3 chrY 5111498 5111782 -19601297 - AluSx SINE Alu -25 287 2 21 36 0 0 chrY 5112008 5112036 -19601043 + AT_rich Low_complexity Low_complexity 1 28 0 2000 137 13 3 chrY 5112423 5112722 -19600357 + AluY SINE Alu 10 311 0 543 69 0 0 chrY 5115474 5115546 -19597533 + (TTCC)n Simple_repeat Simple_repeat 3 74 0 369 180 0 22 chrY 5116854 5116943 -19596136 + L1MA9 LINE L1 6079 6165 -147 25 0 0 0 chrY 5117106 5117131 -19595948 + AT_rich Low_complexity Low_complexity 1 25 0 898 77 8 0 chrY 5117773 5117890 -19595189 + AluSc SINE Alu 1 118 -191 213 39 0 0 chrY 5119171 5119197 -19593882 + (TTG)n Simple_repeat Simple_repeat 2 27 0 213 311 27 27 chrY 5119292 5119366 -19593713 - MER5A DNA MER1_type -73 116 43 299 308 16 16 chrY 5119790 5119972 -19593107 + L1M4 LINE L1 5336 5517 -657 29 0 0 0 chrY 5120090 5120119 -19592960 + AT_rich Low_complexity Low_complexity 1 29 0 27 29 0 0 chrY 5120240 5120274 -19592805 + AT_rich Low_complexity Low_complexity 1 34 0 27 29 0 0 chrY 5120355 5120389 -19592690 + AT_rich Low_complexity Low_complexity 1 34 0 201 74 0 0 chrY 5121291 5121318 -19591761 + (A)n Simple_repeat Simple_repeat 1 27 0 32 0 0 0 chrY 5122025 5122057 -19591022 + AT_rich Low_complexity Low_complexity 1 32 0 3405 181 42 20 chrY 5122561 5123352 -19589727 + L1PA16 LINE L1 5357 6164 -2 36 62 0 0 chrY 5123352 5123416 -19589663 + AT_rich Low_complexity Low_complexity 1 64 0 21 0 0 0 chrY 5124355 5124376 -19588703 + AT_rich Low_complexity Low_complexity 1 21 0 602 227 0 0 chrY 5125490 5125609 -19587470 + MER41E LTR ERV1 1 119 -393 2201 178 46 75 chrY 5126001 5126734 -19586345 - LTR1 LTR ERV1 -104 684 1 859 226 139 32 chrY 5127934 5128186 -19584893 - AluJo SINE Alu -23 289 11 22 56 0 0 chrY 5129923 5129959 -19583120 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chrY 5130115 5130138 -19582941 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chrY 5130860 5130883 -19582196 + AT_rich Low_complexity Low_complexity 1 23 0 2260 83 13 0 chrY 5131644 5131957 -19581122 - L1PA6 LINE L1 -1 6153 5837 726 70 10 0 chrY 5131957 5132057 -19581022 + L1P3 LINE L1 5432 5532 -622 2251 102 0 7 chrY 5136589 5136884 -19576195 - AluY SINE Alu -16 295 3 283 294 56 24 chrY 5137533 5137659 -19575420 + MLT1F LTR MaLR 386 515 -27 1285 238 3 0 chrY 5138122 5138424 -19574655 + AluSx SINE Alu 1 303 -9 1317 194 0 61 chrY 5138484 5138778 -19574301 + AluSx SINE Alu 13 288 -24 250 276 31 10 chrY 5138785 5138883 -19574196 + GA-rich Low_complexity Low_complexity 3 102 0 414 69 0 0 chrY 5138885 5138943 -19574136 + (GGAA)n Simple_repeat Simple_repeat 1 58 0 513 0 0 0 chrY 5139401 5139458 -19573621 + (TA)n Simple_repeat Simple_repeat 1 57 0 402 229 7 118 chrY 5139626 5139770 -19573309 - FLAM_C SINE Alu -5 128 1 290 289 13 0 chrY 5139912 5139988 -19573091 + MLT1E LTR MaLR 385 461 -132 201 74 0 0 chrY 5140046 5140073 -19573006 + (TG)n Simple_repeat Simple_repeat 2 28 0 272 163 20 0 chrY 5140088 5140137 -19572942 + L1MC/D LINE L1 5760 5809 -1999 679 344 59 19 chrY 5141085 5141506 -19571573 - L1M3b LINE L1 -5771 510 73 321 47 0 0 chrY 5141507 5141550 -19571529 + (T)n Simple_repeat Simple_repeat 1 43 0 1682 169 0 49 chrY 5141642 5141950 -19571129 + AluSg SINE Alu 1 293 -17 261 294 18 37 chrY 5142035 5142144 -19570935 - L1M3de LINE L1 -5898 755 649 1563 219 35 56 chrY 5142151 5142581 -19570498 - MSTB LTR MaLR -5 421 1 2734 7 0 0 chrY 5142907 5143195 -19569884 + AluYa5 SINE Alu 22 309 -2 2760 10 0 0 chrY 5143195 5143490 -19569589 + AluYa5 SINE Alu 15 309 -2 2049 147 0 7 chrY 5143495 5143801 -19569278 + AluSx SINE Alu 1 304 -8 279 366 21 24 chrY 5143830 5144085 -19568994 - L1M3de LINE L1 -5217 1436 605 608 255 34 39 chrY 5144430 5144602 -19568477 + L1MA4 LINE L1 5999 6171 -129 1242 223 3 42 chrY 5144602 5144912 -19568167 + AluJo SINE Alu 2 299 -13 608 255 34 39 chrY 5144912 5144947 -19568132 + L1MA4 LINE L1 6171 6205 -95 1443 222 3 14 chrY 5144978 5145266 -19567813 - AluSx SINE Alu -25 287 3 1511 196 28 3 chrY 5145748 5146033 -19567046 + AluSg SINE Alu 1 292 -18 327 233 53 15 chrY 5147980 5148113 -19564966 + L1M4 LINE L1 5308 5445 -733 1435 161 9 52 chrY 5148113 5148548 -19564531 + pTR5 LTR ERV1 743 1211 -1227 260 279 0 0 chrY 5148548 5148627 -19564452 + C-rich Low_complexity Low_complexity 1 79 0 314 43 43 0 chrY 5148628 5148675 -19564404 + pTR5 LTR ERV1 224 272 -2166 1330 153 18 0 chrY 5148675 5148903 -19564176 + AluSc SINE Alu 61 292 -17 1832 148 13 10 chrY 5149400 5149698 -19563381 - AluSc SINE Alu -10 299 1 258 255 32 0 chrY 5150968 5151062 -19562017 + (TA)n Simple_repeat Simple_repeat 1 97 0 821 237 0 25 chrY 5151589 5151825 -19561254 - AluJb SINE Alu -81 231 2 316 159 0 72 chrY 5151975 5152044 -19561035 + MER1B DNA MER1_type 213 276 -63 339 193 0 60 chrY 5152173 5152256 -19560823 + MER1B DNA MER1_type 243 320 -13 470 242 0 0 chrY 5152277 5152376 -19560703 - AluJ/FLAM SINE Alu -211 101 3 2831 243 61 48 chrY 5156913 5158651 -19554428 + L1MA8 LINE L1 4541 6291 0 31 0 0 0 chrY 5158784 5158815 -19554264 + AT_rich Low_complexity Low_complexity 1 31 0 916 224 27 54 chrY 5158962 5159256 -19553823 + AluJb SINE Alu 13 298 -14 229 294 44 38 chrY 5159303 5159463 -19553616 + L1M4c LINE L1 1203 1363 -5021 249 271 24 24 chrY 5160207 5160292 -19552787 + GA-rich Low_complexity Low_complexity 3 87 0 258 250 13 0 chrY 5160386 5160462 -19552617 + (CAGAGA)n Simple_repeat Simple_repeat 4 80 0 405 0 0 0 chrY 5161911 5161956 -19551123 + (CA)n Simple_repeat Simple_repeat 2 46 0 215 290 0 0 chrY 5164445 5164538 -19548541 + CT-rich Low_complexity Low_complexity 1 93 0 1542 220 0 0 chrY 5169069 5169408 -19543671 - AluSx SINE Alu 0 339 1 2080 135 3 0 chrY 5171151 5171440 -19541639 - AluSx SINE Alu -22 290 1 1174 254 7 0 chrY 5171444 5171723 -19541356 - AluJo SINE Alu -22 290 10 25 51 0 0 chrY 5173918 5173957 -19539122 + AT_rich Low_complexity Low_complexity 1 39 0 210 344 0 0 chrY 5174268 5174332 -19538747 + CT-rich Low_complexity Low_complexity 6 69 0 225 0 0 0 chrY 5174878 5174903 -19538176 + (T)n Simple_repeat Simple_repeat 1 25 0 2079 76 32 44 chrY 5174941 5175256 -19537823 + AluY SINE Alu 1 311 0 844 221 106 14 chrY 5175808 5176016 -19537063 + AluJb SINE Alu 56 282 -30 255 79 0 0 chrY 5176041 5176079 -19537000 + (CA)n Simple_repeat Simple_repeat 1 38 0 191 122 0 24 chrY 5176608 5176649 -19536430 + (TA)n Simple_repeat Simple_repeat 2 41 0 827 231 27 27 chrY 5178798 5178984 -19534095 - MER5A DNA MER1_type -2 187 2 2003 134 3 37 chrY 5179976 5180297 -19532782 + AluSx SINE Alu 1 310 -2 41635 64 3 14 chrY 5180317 5186433 -19526646 - L1PA4 LINE L1 -109 6046 2 5453 158 19 16 chrY 5186503 5187470 -19525609 + LTR5 LTR ERVK 1 969 0 479 305 35 0 chrY 5187642 5187783 -19525296 + MIR SINE MIR 83 228 -34 1999 151 3 3 chrY 5188949 5189261 -19523818 + AluSx SINE Alu 1 312 0 209 235 185 0 chrY 5189451 5189532 -19523547 + MIR3 SINE MIR 110 205 -3 1609 197 24 102 chrY 5189551 5189972 -19523107 + MLT1B LTR MaLR 3 390 0 1453 197 31 3 chrY 5190415 5190705 -19522374 - AluJo SINE Alu -9 303 6 663 302 123 28 chrY 5190715 5191284 -19521795 + L1ME4a LINE L1 5445 6067 -54 327 271 88 47 chrY 5191371 5191541 -19521538 + L3 LINE CR1 1304 1480 -97 428 264 227 40 chrY 5191557 5191936 -19521143 - L2 LINE L2 -17 3296 2847 369 258 118 42 chrY 5191987 5192283 -19520796 + MLT1H LTR MaLR 138 536 -13 325 242 61 30 chrY 5194884 5194983 -19518096 - L2 LINE L2 -11 3261 3160 232 250 40 13 chrY 5195268 5195344 -19517735 + L1ME3A LINE L1 5922 5999 -171 699 240 89 13 chrY 5195414 5195639 -19517440 + L1ME3A LINE L1 5920 6161 -9 1077 191 0 28 chrY 5195665 5195880 -19517199 - MER3 DNA MER1_type 0 209 1 256 250 8 100 chrY 5198294 5198414 -19514665 + MER113 DNA MER1_type? 99 207 -314 699 266 48 24 chrY 5198998 5199250 -19513829 - LTR16C LTR ERVL -8 483 226 312 295 21 11 chrY 5202288 5202383 -19510696 + MIR SINE MIR 127 222 -40 298 242 137 40 chrY 5203075 5203199 -19509880 - MIR SINE MIR -21 241 106 233 252 118 50 chrY 5204104 5204223 -19508856 + MIR SINE MIR 16 142 -66 243 23 68 0 chrY 5205197 5205241 -19507838 + T-rich Low_complexity Low_complexity 2 48 0 468 280 119 45 chrY 5206307 5206550 -19506529 - MIR SINE MIR 0 262 2 298 354 78 10 chrY 5207120 5207312 -19505767 + MIR SINE MIR 6 210 -52 1093 175 16 0 chrY 5207572 5207755 -19505324 + MER5A DNA MER1_type 1 186 -3 488 248 88 0 chrY 5207764 5207877 -19505202 + L2 LINE L2 3191 3313 0 190 211 53 0 chrY 5207902 5207940 -19505139 + L2 LINE L2 3180 3219 -94 239 320 8 86 chrY 5208618 5208746 -19504333 - L2 LINE L2 -258 3014 2897 457 239 18 0 chrY 5209131 5209240 -19503839 - L1ME LINE L1 -454 5667 5557 205 299 72 31 chrY 5209518 5209615 -19503464 + L2 LINE L2 2178 2278 -1036 25 51 0 0 chrY 5210014 5210053 -19503026 + AT_rich Low_complexity Low_complexity 1 39 0 39 0 0 0 chrY 5210102 5210141 -19502938 + AT_rich Low_complexity Low_complexity 1 39 0 2219 143 74 20 chrY 5210483 5210875 -19502204 + MLT2C2 LTR ERVL 8 420 -44 993 144 144 6 chrY 5211269 5211449 -19501630 - MER3 DNA MER1_type 0 209 5 319 321 20 2 chrY 5212007 5212132 -19500947 + MIR SINE MIR 30 154 -62 316 320 48 0 chrY 5212135 5212238 -19500841 - L2 LINE L2 0 3313 3206 243 302 42 98 chrY 5212979 5213194 -19499885 - MLT1K LTR MaLR -182 406 204 1024 250 21 8 chrY 5214274 5214514 -19498565 - MIR SINE MIR -13 249 7 318 239 15 0 chrY 5214926 5214993 -19498086 + MER94 DNA DNA 64 131 -3 531 90 0 0 chrY 5215544 5215622 -19497457 + (TC)n Simple_repeat Simple_repeat 1 78 0 192 152 0 0 chrY 5215665 5215698 -19497381 + A-rich Low_complexity Low_complexity 1 33 0 237 328 138 36 chrY 5215913 5216276 -19496803 + L2 LINE L2 2578 2977 -337 480 341 8 0 chrY 5216295 5216427 -19496652 + L2 LINE L2 3181 3313 0 188 255 39 20 chrY 5216565 5216616 -19496463 - MIR3 SINE MIR -46 162 111 213 39 0 0 chrY 5216863 5216889 -19496190 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 1188 245 75 13 chrY 5217768 5218271 -19494808 + MLT1G1 LTR MaLR 1 589 -6 297 0 0 0 chrY 5218765 5218798 -19494281 + (CA)n Simple_repeat Simple_repeat 2 34 0 21 36 0 0 chrY 5219259 5219287 -19493792 + AT_rich Low_complexity Low_complexity 1 28 0 285 357 7 56 chrY 5219764 5219907 -19493172 - MIR3 SINE MIR -2 206 71 226 231 22 0 chrY 5220495 5220586 -19492493 + (TA)n Simple_repeat Simple_repeat 2 94 0 279 0 0 0 chrY 5220958 5220989 -19492090 + (A)n Simple_repeat Simple_repeat 1 31 0 2172 120 0 0 chrY 5220999 5221300 -19491779 + AluY SINE Alu 2 302 -9 215 287 140 15 chrY 5221412 5221548 -19491531 - L2 LINE L2 -193 3120 2968 1344 206 10 40 chrY 5222011 5222312 -19490767 + AluJo SINE Alu 1 292 -20 941 220 173 34 chrY 5222319 5222642 -19490437 + L1ME3A LINE L1 5796 6163 -7 21 0 0 0 chrY 5223002 5223023 -19490056 + AT_rich Low_complexity Low_complexity 1 21 0 376 169 31 15 chrY 5223295 5223360 -19489719 + Charlie5 DNA MER1_type 2 67 -2545 1993 129 4 0 chrY 5224687 5224965 -19488114 - AluSq SINE Alu -27 286 8 459 35 0 0 chrY 5225190 5225247 -19487832 + (TC)n Simple_repeat Simple_repeat 1 57 0 24 0 0 0 chrY 5225479 5225503 -19487576 + AT_rich Low_complexity Low_complexity 1 24 0 280 237 0 0 chrY 5225509 5225568 -19487511 + L1MC/D LINE L1 5548 5606 -2202 186 320 27 13 chrY 5225983 5226058 -19487021 - MIR3 SINE MIR -130 78 3 184 119 48 48 chrY 5227511 5227553 -19485526 + L3b LINE CR1 1400 1441 -142 1779 248 120 26 chrY 5227600 5228077 -19485002 + MLT1E LTR MaLR 1 536 -57 1545 68 0 5 chrY 5228077 5228268 -19484811 - L1PA4 LINE L1 -6 6149 5960 1779 248 120 26 chrY 5228268 5228331 -19484748 + MLT1E LTR MaLR 536 592 -1 4350 80 14 16 chrY 5228332 5229367 -19483712 + MER11A LTR ERVK 1 1266 0 370 236 39 99 chrY 5230113 5230295 -19482784 + MIR SINE MIR 79 249 -13 1695 264 90 104 chrY 5230376 5230621 -19482458 - L2 LINE L2 0 3313 3066 2024 159 3 0 chrY 5230621 5230930 -19482149 + AluSx SINE Alu 3 312 0 1695 264 90 104 chrY 5230930 5232078 -19481001 - L2 LINE L2 -247 3066 1969 1278 203 8 8 chrY 5232658 5232914 -19480165 + L1MD3 LINE L1 7717 7972 -23 751 122 0 104 chrY 5233169 5233304 -19479775 - L1MB4 LINE L1 0 6180 6063 1556 207 0 10 chrY 5233304 5233608 -19479471 - AluJo SINE Alu -11 301 1 751 122 0 104 chrY 5233608 5233636 -19479443 - L1MB4 LINE L1 -117 6063 6034 346 287 185 30 chrY 5234141 5234476 -19478603 - Charlie8 DNA MER1_type -1920 497 111 1833 170 21 0 chrY 5234787 5235076 -19478003 - AluJb SINE Alu -17 295 1 6867 194 14 25 chrY 5236739 5238129 -19474950 + L1P LINE L1 12 1387 -4759 10898 94 22 0 chrY 5238126 5240484 -19472595 + L1PA6 LINE L1 3763 6152 -2 702 250 40 0 chrY 5241441 5241617 -19471462 + MER3 DNA MER1_type 27 209 0 584 174 157 6 chrY 5241626 5241780 -19471299 - MER5A DNA MER1_type -5 184 4 699 265 50 66 chrY 5242003 5242384 -19470695 - Charlie7 DNA MER1_type -1919 693 319 2037 135 0 3 chrY 5242861 5243150 -19469929 + AluSc SINE Alu 6 293 -16 240 217 43 22 chrY 5243172 5243264 -19469815 + L1 LINE L1 4737 4830 -1316 861 207 69 20 chrY 5243419 5243622 -19469457 + MER20 DNA MER1_type 5 217 -2 214 233 58 126 chrY 5243696 5243799 -19469280 + MIR SINE MIR 56 151 -111 184 357 0 0 chrY 5244006 5244048 -19469031 + L2 LINE L2 3154 3195 -77 1413 208 0 64 chrY 5247964 5248318 -19464761 - AluJo SINE Alu 0 312 1 347 252 38 63 chrY 5248834 5248993 -19464086 - MIR3 SINE MIR -43 165 11 440 253 175 0 chrY 5249096 5249250 -19463829 + MER5A DNA MER1_type 9 189 0 541 304 132 9 chrY 5249662 5249882 -19463197 + MIR SINE MIR 16 262 0 1595 170 76 3 chrY 5250001 5250290 -19462789 + AluJb SINE Alu 1 310 -2 701 190 0 0 chrY 5250301 5250422 -19462657 + FLAM_C SINE Alu 3 123 -20 375 60 0 0 chrY 5250422 5250472 -19462607 + (GA)n Simple_repeat Simple_repeat 1 50 0 918 73 0 0 chrY 5250632 5250755 -19462324 + (GGGAA)n Simple_repeat Simple_repeat 3 125 0 1276 174 45 87 chrY 5252077 5252321 -19460758 + AluJb SINE Alu 1 231 -81 2291 75 7 10 chrY 5252321 5252626 -19460453 - AluY SINE Alu -7 304 1 1276 174 45 87 chrY 5252626 5252691 -19460388 + AluJb SINE Alu 231 297 -15 231 114 0 0 chrY 5252762 5252797 -19460282 + (A)n Simple_repeat Simple_repeat 1 35 0 239 211 111 0 chrY 5253130 5253220 -19459859 - L1MC4a LINE L1 -1635 6173 6074 1680 159 3 26 chrY 5253423 5253725 -19459354 + AluSq SINE Alu 9 303 -10 334 259 239 24 chrY 5253736 5253941 -19459138 - L1MC4a LINE L1 -1946 5862 5614 586 40 0 0 chrY 5253949 5254025 -19459054 + L1MA2 LINE L1 6229 6304 0 269 106 0 21 chrY 5254053 5254100 -19458979 + (TA)n Simple_repeat Simple_repeat 2 47 0 375 264 106 45 chrY 5254226 5254489 -19458590 - L1MC4a LINE L1 -787 5359 5174 658 147 10 0 chrY 5254497 5254599 -19458480 - AluSg/x SINE Alu -17 293 191 280 293 112 29 chrY 5255347 5255552 -19457527 + L1MC/D LINE L1 5484 5705 -416 230 259 18 27 chrY 5255634 5255746 -19457333 + L1MC/D LINE L1 5816 5926 -1882 23 0 0 0 chrY 5255768 5255791 -19457288 + AT_rich Low_complexity Low_complexity 1 23 0 1450 189 0 12 chrY 5256024 5256283 -19456796 - AluJo SINE Alu -13 299 44 2066 107 3 14 chrY 5256291 5256580 -19456499 - AluSc SINE Alu -11 298 13 2564 132 30 0 chrY 5257143 5257598 -19455481 + MER1A DNA MER1_type 1 529 0 356 172 134 112 chrY 5257635 5257675 -19455404 + MER5A DNA MER1_type 39 77 -112 1996 154 0 3 chrY 5257675 5257974 -19455105 + AluSg SINE Alu 3 300 -10 356 172 134 112 chrY 5257974 5258067 -19455012 + MER5A DNA MER1_type 77 175 -14 602 219 11 27 chrY 5258225 5258408 -19454671 + MER96B DNA MER1_type? 1 180 -237 1505 167 0 15 chrY 5258408 5258672 -19454407 + AluJb SINE Alu 1 260 -52 394 152 89 0 chrY 5258703 5258782 -19454297 + MER96B DNA MER1_type? 168 253 -164 1740 178 0 3 chrY 5259318 5259610 -19453469 + AluJb SINE Alu 1 291 -21 317 235 17 92 chrY 5259671 5259790 -19453289 + MIR SINE MIR 119 228 -34 234 322 79 38 chrY 5260395 5260484 -19452595 + MIR SINE MIR 71 164 -44 1079 176 0 0 chrY 5261282 5261447 -19451632 - AluSg/x SINE Alu -76 236 72 330 257 122 51 chrY 5261598 5261812 -19451267 - MER102a DNA MER1_type -25 305 77 200 238 0 0 chrY 5262335 5262377 -19450702 + A-rich Low_complexity Low_complexity 1 42 0 1152 154 5 32 chrY 5263209 5263430 -19449649 - L1MB5 LINE L1 0 6174 5960 4577 170 12 31 chrY 5263473 5264492 -19448587 - L1MA9 LINE L1 -39 6273 5275 246 62 0 0 chrY 5264777 5264809 -19448270 + (CA)n Simple_repeat Simple_repeat 2 33 0 4084 181 7 3 chrY 5265415 5266166 -19446913 + MER6 DNA MER2_type 111 864 -1 233 207 9 153 chrY 5266943 5267054 -19446025 + MER5A DNA MER1_type 11 105 -84 268 291 68 17 chrY 5267424 5267541 -19445538 + L2 LINE L2 3191 3313 0 513 174 0 33 chrY 5269193 5269314 -19443765 - Charlie1 DNA MER1_type -25 2736 2620 * 740 170 216 10 chrY 5269302 5269496 -19443583 - Charlie1 DNA MER1_type -2527 234 1 478 267 186 5 chrY 5269865 5270086 -19442993 + MIR SINE MIR 2 262 0 26 30 0 0 chrY 5270198 5270231 -19442848 + AT_rich Low_complexity Low_complexity 1 33 0 1108 173 21 158 chrY 5270376 5270799 -19442280 + MLT1A1 LTR MaLR 1 365 0 357 232 14 0 chrY 5270800 5270869 -19442210 - L2 LINE L2 -17 3255 3186 473 115 42 0 chrY 5271546 5271642 -19441437 + CT-rich Low_complexity Low_complexity 2 101 0 1501 230 17 0 chrY 5271642 5271810 -19441269 - AluJb SINE Alu -7 305 128 185 0 40 0 chrY 5271810 5271835 -19441244 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1501 230 17 0 chrY 5271835 5271966 -19441113 - AluJb SINE Alu -184 128 1 814 217 13 0 chrY 5272177 5272334 -19440745 + FRAM SINE Alu 1 151 -25 23 33 0 0 chrY 5272381 5272411 -19440668 + AT_rich Low_complexity Low_complexity 1 30 0 180 0 0 0 chrY 5273303 5273323 -19439756 + (TA)n Simple_repeat Simple_repeat 2 21 0 * 327 49 0 0 chrY 5273322 5273363 -19439716 + (TG)n Simple_repeat Simple_repeat 2 42 0 25 0 0 0 chrY 5274001 5274026 -19439053 + AT_rich Low_complexity Low_complexity 1 25 0 22 70 0 0 chrY 5274131 5274174 -19438905 + AT_rich Low_complexity Low_complexity 1 43 0 722 279 14 9 chrY 5274807 5275029 -19438050 + MIR SINE MIR 10 232 -30 1102 237 108 46 chrY 5275089 5275545 -19437534 + MLT1D LTR MaLR 22 505 0 449 258 83 59 chrY 5275890 5276436 -19436643 - L1MEd LINE L1 -4862 1343 853 2121 132 0 3 chrY 5277314 5277609 -19435470 + AluY SINE Alu 1 294 -17 1070 185 9 36 chrY 5277656 5277878 -19435201 + MER58A DNA MER1_type 9 224 0 387 41 0 0 chrY 5278418 5278467 -19434612 + (CA)n Simple_repeat Simple_repeat 2 50 0 627 294 11 13 chrY 5278942 5279628 -19433451 + BSR/Beta Satellite Satellite 1 684 0 867 290 31 7 chrY 5279715 5280001 -19433078 + BSR/Beta Satellite Satellite 18 310 -69 540 259 18 23 chrY 5280066 5280323 -19432756 + BSR/Beta Satellite Satellite 1 255 -15 498 276 22 36 chrY 5280596 5281224 -19431855 + BSR/Beta Satellite Satellite 1 619 -21 235 329 20 47 chrY 5281379 5281528 -19431551 + BSR/Beta Satellite Satellite 2 146 -6 1278 274 29 9 chrY 5281615 5282387 -19430692 + BSR/Beta Satellite Satellite 1 787 -7 645 285 15 12 chrY 5282493 5282827 -19430252 + BSR/Beta Satellite Satellite 1 335 -47 463 219 0 5 chrY 5282839 5282960 -19430119 + BSR/Beta Satellite Satellite 1 120 -47 568 260 15 53 chrY 5283011 5283738 -19429341 + BSR/Beta Satellite Satellite 1 698 0 849 301 19 12 chrY 5283768 5284093 -19428986 + BSR/Beta Satellite Satellite 35 361 -18 810 281 22 15 chrY 5284115 5285657 -19427422 + BSR/Beta Satellite Satellite 1 1554 -35 878 283 21 34 chrY 5285700 5287195 -19425884 + BSR/Beta Satellite Satellite 1 1476 -38 313 342 29 0 chrY 5287337 5287500 -19425579 + BSR/Beta Satellite Satellite 1 167 -17 1125 285 26 0 chrY 5287605 5288027 -19425052 + BSR/Beta Satellite Satellite 1 432 -2 549 262 7 17 chrY 5288087 5288391 -19424688 + BSR/Beta Satellite Satellite 1 300 -7 783 313 8 11 chrY 5288498 5288763 -19424316 + BSR/Beta Satellite Satellite 35 298 -81 2130 117 0 20 chrY 5288763 5289063 -19424016 + AluY SINE Alu 1 294 -17 973 264 26 31 chrY 5289094 5290707 -19422372 + BSR/Beta Satellite Satellite 1 1604 0 1155 274 27 27 chrY 5290790 5291489 -19421590 + BSR/Beta Satellite Satellite 1 699 -5 645 277 14 30 chrY 5291609 5292306 -19420773 + BSR/Beta Satellite Satellite 1 685 -17 270 305 67 29 chrY 5292459 5292564 -19420515 + BSR/Beta Satellite Satellite 40 148 -4 1210 311 17 0 chrY 5292699 5293121 -19419958 + BSR/Beta Satellite Satellite 1 429 0 255 315 0 69 chrY 5293135 5293265 -19419814 + BSR/Beta Satellite Satellite 15 135 -7 * 1286 289 17 23 chrY 5293169 5294926 -19418153 + BSR/Beta Satellite Satellite 1 1746 -30 598 267 15 15 chrY 5294961 5295317 -19417762 + BSR/Beta Satellite Satellite 1 356 -5 1113 257 27 21 chrY 5295346 5295677 -19417402 + BSR/Beta Satellite Satellite 29 361 -18 903 316 41 11 chrY 5295699 5296152 -19416927 + BSR/Beta Satellite Satellite 1 466 -52 502 269 18 17 chrY 5296218 5296886 -19416193 + BSR/Beta Satellite Satellite 1 668 -5 566 253 34 8 chrY 5296980 5297277 -19415802 + BSR/Beta Satellite Satellite 1 304 -49 527 281 11 35 chrY 5297356 5297660 -19415419 + BSR/Beta Satellite Satellite 1 296 -14 529 254 34 46 chrY 5297788 5298479 -19414600 + BSR/Beta Satellite Satellite 1 682 -27 1370 281 17 17 chrY 5298795 5299669 -19413410 + BSR/Beta Satellite Satellite 1 873 -10 1187 288 19 6 chrY 5299790 5300374 -19412705 + BSR/Beta Satellite Satellite 1 591 -125 559 275 37 38 chrY 5300491 5301059 -19412020 + BSR/Beta Satellite Satellite 1 567 -7 543 302 15 17 chrY 5301248 5302053 -19411026 + BSR/Beta Satellite Satellite 1 802 -9 250 293 67 13 chrY 5302772 5302847 -19410232 - LTR32 LTR ERVL -1 470 392 1604 180 22 0 chrY 5302847 5303125 -19409954 - AluSp SINE Alu -29 284 1 339 284 43 43 chrY 5303126 5303242 -19409837 - LTR32 LTR ERVL -341 130 15 319 49 0 0 chrY 5305965 5306006 -19407073 - L1P LINE L1 -2774 3372 3332 1990 204 35 88 chrY 5306084 5306734 -19406345 + LTR6A LTR ERV1 1 564 0 44147 73 3 2 chrY 5306734 5315595 -19397484 + HERVS71 LTR ERV1 1 8910 -68 1928 215 34 87 chrY 5315595 5316245 -19396834 + LTR6A LTR ERV1 1 564 0 11142 82 3 0 chrY 5316353 5317860 -19395219 - L1PA5 LINE L1 -2774 3372 1862 15448 83 5 2 chrY 5317864 5320662 -19392417 + L1PA5 LINE L1 3365 6173 0 1510 208 0 7 chrY 5321048 5321332 -19391747 + AluSc SINE Alu 3 284 -25 1597 196 3 3 chrY 5322109 5322436 -19390643 - AluSq SINE Alu 0 327 1 22 0 0 0 chrY 5322462 5322484 -19390595 + AT_rich Low_complexity Low_complexity 1 22 0 36 23 0 0 chrY 5323602 5323645 -19389434 + AT_rich Low_complexity Low_complexity 1 43 0 7047 275 56 11 chrY 5323659 5324694 -19388385 + L1PA12 LINE L1 1 988 -6593 504 0 0 0 chrY 5324694 5324750 -19388329 + (TTTCC)n Simple_repeat Simple_repeat 1 56 0 7047 275 56 11 chrY 5324750 5324929 -19388150 + L1PA12 LINE L1 988 1158 -6423 1701 188 3 0 chrY 5324929 5325221 -19387858 - AluSp SINE Alu -19 294 2 7047 275 56 11 chrY 5325221 5325921 -19387158 + L1PA12 LINE L1 1158 2002 -5579 2703 284 108 61 chrY 5325928 5327599 -19385480 + L1PA13 LINE L1 347 1938 -4859 195 100 0 0 chrY 5327599 5327629 -19385450 + (TAA)n Simple_repeat Simple_repeat 1 30 0 2703 284 108 61 chrY 5327629 5328195 -19384884 + L1PA13 LINE L1 1938 2476 -4321 2058 125 0 41 chrY 5328195 5328514 -19384565 + AluY SINE Alu 2 307 -4 2703 284 108 61 chrY 5328514 5328795 -19384284 + L1PA13 LINE L1 2476 3154 -3643 45 0 0 0 chrY 5330162 5330207 -19382872 + AT_rich Low_complexity Low_complexity 1 45 0 236 300 14 0 chrY 5330207 5330277 -19382802 + L1M4c LINE L1 414 484 -5819 1710 195 0 0 chrY 5330633 5330936 -19382143 + AluSq SINE Alu 2 304 -9 711 69 0 0 chrY 5330954 5331056 -19382023 + (GAAAA)n Simple_repeat Simple_repeat 4 105 0 1804 132 34 0 chrY 5331068 5331334 -19381745 - AluSq SINE Alu 0 313 39 25 0 0 0 chrY 5331540 5331565 -19381514 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chrY 5331632 5331660 -19381419 + AT_rich Low_complexity Low_complexity 1 28 0 225 280 21 0 chrY 5331703 5331796 -19381283 + A-rich Low_complexity Low_complexity 3 97 0 393 306 82 22 chrY 5331863 5332131 -19380948 + L1M4c LINE L1 1374 1657 -4727 792 284 94 33 chrY 5332157 5332787 -19380292 + L1M4c LINE L1 2446 3113 -3269 1516 200 7 3 chrY 5332807 5333092 -19379987 - AluSc SINE Alu -23 286 1 231 264 0 0 chrY 5333124 5333177 -19379902 + L1 LINE L1 4527 4579 -1567 1118 279 20 8 chrY 5333189 5333794 -19379285 + BSR/Beta Satellite Satellite 1 612 -59 579 274 24 23 chrY 5333902 5334888 -19378191 + BSR/Beta Satellite Satellite 1 987 -46 1150 303 23 7 chrY 5335024 5335653 -19377426 + BSR/Beta Satellite Satellite 1 639 0 228 302 112 26 chrY 5335747 5335863 -19377216 + BSR/Beta Satellite Satellite 25 150 -2 641 275 15 25 chrY 5335920 5336627 -19376452 + BSR/Beta Satellite Satellite 1 699 -66 228 370 36 0 chrY 5336662 5336800 -19376279 + BSR/Beta Satellite Satellite 6 148 -4 1220 294 29 5 chrY 5336930 5337409 -19375670 + BSR/Beta Satellite Satellite 1 490 -15 1529 196 3 20 chrY 5337416 5337545 -19375534 + AluSg SINE Alu 1 131 -179 551 104 9 0 chrY 5337545 5337651 -19375428 + (TAGA)n Simple_repeat Simple_repeat 4 110 0 1529 196 3 20 chrY 5337651 5337827 -19375252 + AluSg SINE Alu 131 301 -9 1189 300 18 9 chrY 5337859 5338723 -19374356 + BSR/Beta Satellite Satellite 1 871 -254 255 250 22 43 chrY 5338722 5338814 -19374265 - LTR22A LTR ERVK 0 458 369 * 1365 251 44 18 chrY 5338948 5339335 -19373744 - LTR22 LTR ERVK -112 397 1 4506 195 42 4 chrY 5339335 5340354 -19372725 - HERVK22 LTR ERVK 0 6837 3180 408 158 0 13 chrY 5340352 5340428 -19372651 - HERVK22 LTR ERVK -3960 2877 2803 * 1031 159 92 59 chrY 5340428 5340667 -19372412 - LTR17 LTR ERV1 0 780 534 2324 157 2 16 chrY 5340668 5341094 -19371985 - LTR17 LTR ERV1 -360 420 1 2507 174 29 2 chrY 5341094 5341572 -19371507 - HERVK22 LTR ERVK -4031 2806 2316 * 3841 160 67 21 chrY 5341567 5342319 -19370760 - HERVK22 LTR ERVK -6051 786 1 296 273 0 0 chrY 5342319 5342396 -19370683 - LTR22A LTR ERVK 0 458 382 264 170 0 0 chrY 5342436 5342489 -19370590 + (CAG)n Simple_repeat Simple_repeat 3 55 0 1102 254 48 25 chrY 5342579 5342934 -19370145 - LTR22 LTR ERVK -146 363 1 619 330 0 0 chrY 5342936 5343151 -19369928 + BSR/Beta Satellite Satellite 121 335 -44 357 295 0 0 chrY 5343162 5343290 -19369789 + BSR/Beta Satellite Satellite 1 128 -34 533 262 26 34 chrY 5343335 5343696 -19369383 + BSR/Beta Satellite Satellite 1 358 0 243 278 14 14 chrY 5343710 5343782 -19369297 + BSR/Beta Satellite Satellite 23 94 -48 943 297 17 8 chrY 5343801 5344598 -19368481 + BSR/Beta Satellite Satellite 1 804 -35 483 279 20 32 chrY 5344641 5345639 -19367440 + BSR/Beta Satellite Satellite 1 986 -5 1270 280 10 12 chrY 5345811 5346416 -19366663 + BSR/Beta Satellite Satellite 1 603 -15 261 354 8 0 chrY 5346507 5346637 -19366442 + BSR/Beta Satellite Satellite 1 131 -11 468 277 16 23 chrY 5346828 5347101 -19365978 + BSR/Beta Satellite Satellite 1 270 -10 1049 293 4 18 chrY 5347126 5347545 -19365534 + BSR/Beta Satellite Satellite 1 413 -23 576 278 14 21 chrY 5347647 5348299 -19364780 + BSR/Beta Satellite Satellite 1 646 -4 364 303 0 42 chrY 5348371 5348513 -19364566 + BSR/Beta Satellite Satellite 3 138 -4 389 337 8 0 chrY 5348525 5348722 -19364357 + BSR/Beta Satellite Satellite 1 198 -6 1041 297 3 0 chrY 5348818 5349114 -19363965 + BSR/Beta Satellite Satellite 21 317 -62 580 295 2 5 chrY 5349142 5349515 -19363564 + BSR/Beta Satellite Satellite 1 372 -35 278 294 32 26 chrY 5349623 5349839 -19363240 + BSR/Beta Satellite Satellite 1 217 -6 * 555 258 11 46 chrY 5349753 5350284 -19362795 + BSR/Beta Satellite Satellite 1 512 -11 423 292 18 37 chrY 5350366 5350874 -19362205 + BSR/Beta Satellite Satellite 1 498 -5 548 282 14 14 chrY 5350893 5351445 -19361634 + BSR/Beta Satellite Satellite 1 551 0 1174 263 38 2 chrY 5351542 5351931 -19361148 + BSR/Beta Satellite Satellite 1 402 -6 322 294 28 32 chrY 5351942 5352233 -19360846 + BSR/Beta Satellite Satellite 1 289 0 506 269 9 39 chrY 5352351 5352998 -19360081 + BSR/Beta Satellite Satellite 1 627 0 680 316 25 0 chrY 5353382 5353651 -19359428 + BSR/Beta Satellite Satellite 1 275 -171 549 236 17 36 chrY 5353862 5354709 -19358370 + BSR/Beta Satellite Satellite 1 830 -22 899 270 32 35 chrY 5354917 5355228 -19357851 + BSR/Beta Satellite Satellite 21 330 -49 292 344 12 24 chrY 5355281 5355470 -19357609 + BSR/Beta Satellite Satellite 1 186 -7 306 345 0 0 chrY 5355553 5355672 -19357407 + BSR/Beta Satellite Satellite 4 122 -20 503 263 16 40 chrY 5355804 5356433 -19356646 + BSR/Beta Satellite Satellite 1 613 -23 328 357 37 4 chrY 5356591 5356802 -19356277 + BSR/Beta Satellite Satellite 1 217 -7 1100 288 24 4 chrY 5356821 5357241 -19355838 + BSR/Beta Satellite Satellite 1 428 -7 590 264 22 15 chrY 5357257 5357638 -19355441 + BSR/Beta Satellite Satellite 1 383 -44 2171 100 31 0 chrY 5357711 5358002 -19355077 - AluY SINE Alu -11 300 1 1142 293 6 6 chrY 5358017 5358687 -19354392 + BSR/Beta Satellite Satellite 1 670 -48 411 253 0 0 chrY 5358699 5358813 -19354266 + BSR/Beta Satellite Satellite 1 114 -50 579 300 6 18 chrY 5358907 5359317 -19353762 + BSR/Beta Satellite Satellite 1 404 -63 857 283 20 31 chrY 5359474 5360012 -19353067 + BSR/Beta Satellite Satellite 1 532 -20 1945 252 69 20 chrY 5360038 5360796 -19352283 - L1M4 LINE L1 -729 5445 4629 180 0 0 0 chrY 5360796 5360816 -19352263 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 1945 252 69 20 chrY 5360816 5361058 -19352021 - L1M4 LINE L1 -1545 4629 4400 363 248 8 8 chrY 5361062 5361183 -19351896 + L1 LINE L1 3905 4025 -2121 4656 163 2 10 chrY 5361189 5361975 -19351104 - LTR17 LTR ERV1 0 780 1 1944 112 0 7 chrY 5361975 5362269 -19350810 - HERV17 LTR ERV1 0 8626 8335 295 26 0 0 chrY 5362259 5362298 -19350781 - HERV17 LTR ERV1 -1078 7548 7510 * 3941 103 4 0 chrY 5362291 5362853 -19350226 - HERV17 LTR ERV1 -2607 6019 5456 * 6279 118 4 2 chrY 5362840 5363792 -19349287 - HERV17 LTR ERV1 -3923 4703 3750 6780 113 9 1 chrY 5363811 5364121 -19348958 - HERV17 LTR ERV1 -5166 3460 3154 180 0 0 0 chrY 5364121 5364141 -19348938 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 6780 113 9 1 chrY 5364141 5364853 -19348226 - HERV17 LTR ERV1 -5472 3154 2430 2159 121 0 6 chrY 5364842 5365174 -19347905 - HERV17 LTR ERV1 -6616 2010 1681 * 9557 140 42 38 chrY 5365173 5367029 -19346050 - HERV17 LTR ERV1 -6762 1864 2 4515 173 8 6 chrY 5367029 5367805 -19345274 - LTR17 LTR ERV1 0 780 4 981 234 7 0 chrY 5367835 5368104 -19344975 + L1 LINE L1 4057 4327 -1819 1899 141 3 3 chrY 5368258 5368572 -19344507 - AluY SINE Alu 0 314 1 1329 251 27 51 chrY 5368789 5369199 -19343880 + MER61B LTR ERV1 1 400 -25 207 173 0 0 chrY 5369203 5369255 -19343824 + A-rich Low_complexity Low_complexity 1 52 0 352 236 24 39 chrY 5369283 5369410 -19343669 + MER61B-int LTR ERV1 19 143 -5074 416 244 17 17 chrY 5369468 5369587 -19343492 + MER61B-int LTR ERV1 280 398 -4819 1588 199 12 39 chrY 5369650 5370081 -19342998 + MER61B-int LTR ERV1 422 840 -4377 1147 211 31 0 chrY 5370081 5370342 -19342737 + MER61B-int LTR ERV1 944 1212 -4005 * 9195 219 69 64 chrY 5370338 5374173 -19338906 + MER61B-int LTR ERV1 1361 5216 -1 1667 219 16 40 chrY 5374178 5374607 -19338472 + MER61B LTR ERV1 5 423 -2 317 285 16 8 chrY 5374637 5374760 -19338319 - L1 LINE L1 -1293 4853 4730 1116 234 23 23 chrY 5374843 5375099 -19337980 + AluJo SINE Alu 13 268 -44 306 352 0 0 chrY 5375296 5375472 -19337607 - L1 LINE L1 -3324 2822 2647 297 196 54 11 chrY 5375501 5375593 -19337486 + T-rich Low_complexity Low_complexity 2 97 0 376 194 24 59 chrY 5375650 5375820 -19337259 + T-rich Low_complexity Low_complexity 4 167 0 195 139 0 0 chrY 5375843 5375879 -19337200 + (TTTTA)n Simple_repeat Simple_repeat 3 38 0 202 197 56 14 chrY 5375896 5375967 -19337112 + T-rich Low_complexity Low_complexity 5 78 0 1396 204 62 0 chrY 5376379 5376653 -19336426 - AluSq SINE Alu -20 293 3 1396 280 22 32 chrY 5377557 5378018 -19335061 - LTR32 LTR ERVL -1 470 15 405 86 0 0 chrY 5379868 5379926 -19333153 + (TG)n Simple_repeat Simple_repeat 1 58 0 21 100 0 0 chrY 5380298 5380368 -19332711 + AT_rich Low_complexity Low_complexity 1 70 0 31 58 0 0 chrY 5380787 5380839 -19332240 + AT_rich Low_complexity Low_complexity 1 52 0 1542 195 50 0 chrY 5381224 5381343 -19331736 + AluY SINE Alu 1 113 -198 6170 44 5 0 chrY 5381343 5382092 -19330987 + L1PA3 LINE L1 5403 6155 0 1542 195 50 0 chrY 5382092 5382254 -19330825 + AluY SINE Alu 113 296 -15 29 28 0 0 chrY 5382758 5382794 -19330285 + AT_rich Low_complexity Low_complexity 1 36 0 1668 175 11 7 chrY 5384114 5384400 -19328679 - AluSc SINE Alu -14 295 9 5134 268 17 3 chrY 5384447 5386176 -19326903 + L1PA12 LINE L1 3 2007 -5574 1283 298 23 20 chrY 5386170 5386569 -19326510 + L1PA13 LINE L1 335 734 -6053 * 372 368 144 14 chrY 5386632 5386993 -19326086 + L1PA13 LINE L1 851 1258 -5529 1888 260 63 42 chrY 5387009 5387800 -19325279 + L1PA13 LINE L1 1410 2217 -4570 1616 247 117 24 chrY 5387797 5388472 -19324607 + L1PA13 LINE L1 2425 3162 -3635 * 253 343 22 15 chrY 5389380 5389517 -19323562 + L1M4c LINE L1 418 555 -5748 1678 188 26 0 chrY 5389863 5390166 -19322913 + AluSq SINE Alu 3 313 0 24 67 0 0 chrY 5390480 5390525 -19322554 + AT_rich Low_complexity Low_complexity 1 45 0 262 237 13 0 chrY 5390550 5390626 -19322453 + A-rich Low_complexity Low_complexity 3 79 0 284 329 47 12 chrY 5390692 5390947 -19322132 + L1M4c LINE L1 1370 1633 -4751 572 298 77 5 chrY 5391140 5391519 -19321560 + L1M4c LINE L1 2701 3106 -3276 286 23 47 0 chrY 5391522 5391565 -19321514 + (TTTA)n Simple_repeat Simple_repeat 4 48 0 1271 230 7 11 chrY 5391570 5391848 -19321231 - AluSc SINE Alu -32 277 1 277 281 56 43 chrY 5391880 5392183 -19320896 + L1 LINE L1 4526 4832 -1314 536 268 8 10 chrY 5392192 5392509 -19320570 + BSR/Beta Satellite Satellite 1 316 0 999 288 22 20 chrY 5392539 5393866 -19319213 + BSR/Beta Satellite Satellite 1 1328 -39 455 274 19 19 chrY 5393919 5394428 -19318651 + BSR/Beta Satellite Satellite 1 509 -46 1017 281 14 20 chrY 5394563 5395192 -19317887 + BSR/Beta Satellite Satellite 1 625 0 285 299 31 20 chrY 5395279 5395426 -19317653 + BSR/Beta Satellite Satellite 1 148 -58 511 262 6 33 chrY 5395446 5396075 -19317004 + BSR/Beta Satellite Satellite 1 612 -28 246 325 34 17 chrY 5396243 5396360 -19316719 + BSR/Beta Satellite Satellite 258 376 -3 879 289 23 7 chrY 5396477 5397334 -19315745 + BSR/Beta Satellite Satellite 1 870 -2 896 309 33 8 chrY 5397362 5397956 -19315123 + BSR/Beta Satellite Satellite 1 608 -122 281 319 11 0 chrY 5398067 5398161 -19314918 + BSR/Beta Satellite Satellite 1 95 -47 470 279 21 14 chrY 5398269 5399054 -19314025 + BSR/Beta Satellite Satellite 1 790 -25 539 303 11 4 chrY 5399088 5399289 -19313790 + BSR/Beta Satellite Satellite 1 202 -6 552 249 18 38 chrY 5399688 5399952 -19313127 + BSR/Beta Satellite Satellite 1 258 -15 244 363 0 10 chrY 5399983 5400085 -19312994 + BSR/Beta Satellite Satellite 22 122 -20 538 276 6 21 chrY 5400224 5400835 -19312244 + BSR/Beta Satellite Satellite 1 602 -30 1081 287 27 20 chrY 5401259 5402945 -19310134 + BSR/Beta Satellite Satellite 1 1697 -53 542 282 26 23 chrY 5403143 5404048 -19309031 + BSR/Beta Satellite Satellite 1 907 -2 1056 311 14 14 chrY 5404137 5404693 -19308386 + BSR/Beta Satellite Satellite 1 555 -8 302 298 50 0 chrY 5404777 5404898 -19308181 + BSR/Beta Satellite Satellite 3 129 -23 853 288 20 14 chrY 5404970 5405399 -19307680 + BSR/Beta Satellite Satellite 1 431 -60 497 259 20 44 chrY 5405456 5405965 -19307114 + BSR/Beta Satellite Satellite 1 496 0 392 289 17 30 chrY 5405979 5406460 -19306619 + BSR/Beta Satellite Satellite 1 474 -6 1060 289 13 7 chrY 5406633 5406934 -19306145 + BSR/Beta Satellite Satellite 28 330 -49 552 273 0 37 chrY 5406990 5407185 -19305894 + BSR/Beta Satellite Satellite 1 187 0 245 266 0 13 chrY 5407216 5407295 -19305784 + BSR/Beta Satellite Satellite 35 112 -40 633 243 14 35 chrY 5407569 5408113 -19304966 + BSR/Beta Satellite Satellite 1 532 -27 301 341 22 7 chrY 5408281 5408416 -19304663 + BSR/Beta Satellite Satellite 2 138 -14 1135 279 45 0 chrY 5408519 5408935 -19304144 + BSR/Beta Satellite Satellite 1 434 0 457 321 13 25 chrY 5409011 5409384 -19303695 + BSR/Beta Satellite Satellite 1 368 0 964 310 13 24 chrY 5409419 5410070 -19303009 + BSR/Beta Satellite Satellite 1 643 -75 378 267 37 14 chrY 5410108 5410241 -19302838 + BSR/Beta Satellite Satellite 1 136 -39 473 292 18 22 chrY 5410290 5410770 -19302309 + BSR/Beta Satellite Satellite 1 478 -30 444 299 4 2 chrY 5410795 5411105 -19301974 + BSR/Beta Satellite Satellite 1 310 -67 1121 309 9 2 chrY 5411172 5411922 -19301157 + BSR/Beta Satellite Satellite 1 754 -47 536 276 6 19 chrY 5411974 5412400 -19300679 + BSR/Beta Satellite Satellite 1 420 -5 248 209 0 75 chrY 5412427 5412494 -19300585 + BSR/Beta Satellite Satellite 42 103 -39 278 314 10 0 chrY 5412563 5412665 -19300414 + BSR/Beta Satellite Satellite 40 142 -10 508 272 12 51 chrY 5412818 5413436 -19299643 + BSR/Beta Satellite Satellite 1 593 -42 1236 264 18 10 chrY 5413981 5414477 -19298602 + BSR/Beta Satellite Satellite 1 499 0 585 276 38 19 chrY 5414521 5415216 -19297863 + BSR/Beta Satellite Satellite 1 708 -56 990 283 28 6 chrY 5415235 5415557 -19297522 + BSR/Beta Satellite Satellite 1 329 -50 507 284 16 30 chrY 5415580 5416117 -19296962 + BSR/Beta Satellite Satellite 1 529 0 483 281 16 14 chrY 5416129 5416752 -19296327 + BSR/Beta Satellite Satellite 1 624 -66 891 296 20 27 chrY 5416907 5417491 -19295588 + BSR/Beta Satellite Satellite 1 580 -46 533 270 21 32 chrY 5417806 5418506 -19294573 + BSR/Beta Satellite Satellite 1 692 -7 1131 287 23 16 chrY 5418821 5419323 -19293756 + BSR/Beta Satellite Satellite 1 505 -1 466 275 18 22 chrY 5419338 5419785 -19293294 + BSR/Beta Satellite Satellite 1 444 -50 872 317 36 7 chrY 5419799 5420586 -19292493 + BSR/Beta Satellite Satellite 1 809 -35 519 259 54 19 chrY 5420631 5421473 -19291606 + BSR/Beta Satellite Satellite 1 871 0 824 288 21 12 chrY 5421503 5421829 -19291250 + BSR/Beta Satellite Satellite 35 363 -16 1340 202 113 14 chrY 5421980 5422351 -19290728 - LTR22 LTR ERVK -172 408 1 382 277 20 15 chrY 5422355 5422535 -19290544 + BSR/Beta Satellite Satellite 1 180 0 393 319 24 3 chrY 5422571 5422954 -19290125 + BSR/Beta Satellite Satellite 1 390 0 1000 308 26 9 chrY 5422991 5423774 -19289305 + BSR/Beta Satellite Satellite 1 796 -46 574 262 17 38 chrY 5423824 5424065 -19289014 + BSR/Beta Satellite Satellite 1 235 -44 535 252 23 4 chrY 5424109 5424458 -19288621 + BSR/Beta Satellite Satellite 1 355 -39 482 287 18 13 chrY 5424502 5424782 -19288297 + BSR/Beta Satellite Satellite 1 281 -6 1196 276 13 19 chrY 5424889 5425561 -19287518 + BSR/Beta Satellite Satellite 1 667 -20 541 287 10 28 chrY 5425580 5426334 -19286745 + BSR/Beta Satellite Satellite 1 740 -3 303 322 27 4 chrY 5426511 5426670 -19286409 + BSR/Beta Satellite Satellite 1 162 -15 836 312 26 2 chrY 5426795 5427198 -19285881 + BSR/Beta Satellite Satellite 1 412 0 466 277 10 32 chrY 5427257 5427603 -19285476 + BSR/Beta Satellite Satellite 1 338 -35 6137 110 23 2 chrY 5427726 5428605 -19284474 - MER11D LTR ERVK 0 897 1 15805 79 10 1 chrY 5428605 5431154 -19281925 - HERVK11D LTR ERVK 0 7752 5100 347 359 33 22 chrY 5431286 5431470 -19281609 - L2 LINE L2 -2835 479 294 213 178 59 59 chrY 5431677 5431778 -19281301 + (TATATG)n Simple_repeat Simple_repeat 4 104 0 401 174 64 35 chrY 5431787 5431959 -19281120 + (TA)n Simple_repeat Simple_repeat 1 177 0 575 294 34 21 chrY 5431970 5432208 -19280871 - MLT1C LTR MaLR -192 275 35 207 0 0 0 chrY 5432209 5432232 -19280847 + (T)n Simple_repeat Simple_repeat 1 23 0 366 153 38 77 chrY 5432915 5433098 -19279981 + (CATATA)n Simple_repeat Simple_repeat 2 177 0 * 370 161 77 37 chrY 5433075 5433414 -19279665 + (TA)n Simple_repeat Simple_repeat 1 352 0 366 153 42 76 chrY 5433356 5433948 -19279131 + (CATATA)n Simple_repeat Simple_repeat 1 572 0 * 19143 89 9 6 chrY 5483956 5488968 -19224111 - HERVK11D LTR ERVK -2647 5105 1 6934 91 23 2 chrY 5488968 5489845 -19223234 - MER11D LTR ERVK 0 897 3 941 321 8 2 chrY 5489870 5490591 -19222488 + BSR/Beta Satellite Satellite 1 724 -46 668 281 19 19 chrY 5490651 5491716 -19221363 + BSR/Beta Satellite Satellite 1 1064 -6 561 291 21 90 chrY 5491812 5492004 -19221075 + BSR/Beta Satellite Satellite 21 225 -154 1283 6 41 0 chrY 5492004 5492173 -19220906 + (TTTC)n Simple_repeat Simple_repeat 3 178 0 561 291 21 90 chrY 5492173 5492189 -19220890 + BSR/Beta Satellite Satellite 225 241 -138 1565 189 23 7 chrY 5492189 5492491 -19220588 - AluSc SINE Alu -2 307 1 561 291 21 90 chrY 5492491 5492614 -19220465 + BSR/Beta Satellite Satellite 241 330 -49 475 280 22 31 chrY 5492677 5492918 -19220161 + BSR/Beta Satellite Satellite 1 238 -15 564 280 16 33 chrY 5493109 5493760 -19219319 + BSR/Beta Satellite Satellite 1 640 0 318 379 8 0 chrY 5493920 5494077 -19219002 + BSR/Beta Satellite Satellite 1 158 -30 954 274 22 13 chrY 5494136 5494782 -19218297 + BSR/Beta Satellite Satellite 1 651 -5 418 298 5 9 chrY 5494796 5494953 -19218126 + BSR/Beta Satellite Satellite 1 156 -44 858 316 15 6 chrY 5495023 5495349 -19217730 + BSR/Beta Satellite Satellite 35 363 -16 930 307 11 4 chrY 5495365 5495814 -19217265 + BSR/Beta Satellite Satellite 1 452 -54 530 270 34 19 chrY 5496119 5496812 -19216267 + BSR/Beta Satellite Satellite 1 703 -4 833 265 11 62 chrY 5497129 5497828 -19215251 + BSR/Beta Satellite Satellite 1 663 -51 532 284 5 28 chrY 5497874 5498640 -19214439 + BSR/Beta Satellite Satellite 1 748 -38 261 377 15 0 chrY 5498819 5498949 -19214130 + BSR/Beta Satellite Satellite 7 138 -14 1192 271 27 21 chrY 5499052 5500350 -19212729 + BSR/Beta Satellite Satellite 1 1305 -9 731 314 9 6 chrY 5500362 5500832 -19212247 + BSR/Beta Satellite Satellite 1 471 -35 618 226 9 0 chrY 5500874 5501037 -19212042 + BSR/Beta Satellite Satellite 1 164 -46 548 273 12 16 chrY 5501061 5501710 -19211369 + BSR/Beta Satellite Satellite 1 646 -5 914 311 16 22 chrY 5501753 5502463 -19210616 + BSR/Beta Satellite Satellite 1 705 -24 598 278 16 17 chrY 5502498 5503559 -19209520 + BSR/Beta Satellite Satellite 1 1059 -6 1111 281 18 33 chrY 5503652 5504405 -19208674 + BSR/Beta Satellite Satellite 1 741 -33 461 265 15 38 chrY 5504561 5504753 -19208326 + BSR/Beta Satellite Satellite 1 187 -15 471 265 9 33 chrY 5504789 5505166 -19207913 + BSR/Beta Satellite Satellite 1 367 -41 231 297 27 0 chrY 5505343 5505417 -19207662 + BSR/Beta Satellite Satellite 77 152 0 896 275 33 7 chrY 5505579 5506450 -19206629 + BSR/Beta Satellite Satellite 1 894 -46 979 300 17 4 chrY 5506466 5507091 -19205988 + BSR/Beta Satellite Satellite 1 633 -81 401 258 0 39 chrY 5507137 5507265 -19205814 + BSR/Beta Satellite Satellite 1 123 -43 565 279 17 25 chrY 5507318 5508260 -19204819 + BSR/Beta Satellite Satellite 1 934 0 797 270 19 19 chrY 5508365 5508628 -19204451 + BSR/Beta Satellite Satellite 36 298 -81 7952 187 26 15 chrY 5508630 5511214 -19201865 + MER61-int LTR ERV1 2141 4818 -399 243 0 0 0 chrY 5511216 5511243 -19201836 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 788 224 0 11 chrY 5511245 5511419 -19201660 + MER61-int LTR ERV1 4872 5043 -174 554 212 80 57 chrY 5511428 5511640 -19201439 - HERVKC4 LTR ERVK -2166 3096 2880 21 0 0 0 chrY 5512475 5512496 -19200583 + AT_rich Low_complexity Low_complexity 1 21 0 1309 159 0 43 chrY 5513075 5513308 -19199771 - AluSq SINE Alu -86 227 5 31 0 0 0 chrY 5514483 5514514 -19198565 + AT_rich Low_complexity Low_complexity 1 31 0 4528 285 16 15 chrY 5514530 5516281 -19196798 + L1PA12 LINE L1 1 2007 -5574 1143 319 71 5 chrY 5516312 5516735 -19196344 + L1PA13 LINE L1 346 796 -5991 336 369 6 6 chrY 5516961 5517121 -19195958 + L1PA13 LINE L1 1099 1258 -5529 2370 261 71 33 chrY 5517122 5518796 -19194283 + L1PA13 LINE L1 1394 3154 -3643 6273 132 7 14 chrY 5519874 5520930 -19192149 - MER11C LTR ERVK -23 1048 1 6988 98 0 1 chrY 5520930 5521928 -19191151 - HERVK11 LTR ERVK 0 7953 6957 * 7873 87 15 2 chrY 5521915 5523088 -19189991 - HERVK11 LTR ERVK -1188 6765 5525 869 143 0 0 chrY 5523086 5523226 -19189853 - HERVK11 LTR ERVK -3352 4601 4462 * 7304 65 4 0 chrY 5523200 5524169 -19188910 - HERVK11 LTR ERVK -4069 3884 2912 2701 106 35 2 chrY 5524161 5524742 -19188337 - HERVK11 LTR ERVK -5253 2700 1165 * 3455 164 35 14 chrY 5524717 5525370 -19187709 - HERVK11 LTR ERVK -7081 872 206 1926 162 0 0 chrY 5525358 5525686 -19187393 - HERVK11 LTR ERVK -7625 328 1 * 6183 123 6 40 chrY 5525703 5526797 -19186282 - MER11C LTR ERVK -14 1057 1 1334 246 0 0 chrY 5527514 5527791 -19185288 + AluSq SINE Alu 2 278 -35 653 12 0 24 chrY 5527794 5527877 -19185202 + (GAAA)n Simple_repeat Simple_repeat 1 81 0 2127 105 7 7 chrY 5527883 5528177 -19184902 + AluY SINE Alu 5 298 -13 487 309 7 22 chrY 5528687 5528962 -19184117 + L1M4 LINE L1 1371 1641 -4743 415 287 96 32 chrY 5529006 5529599 -19183480 + L1M4 LINE L1 2444 3066 -3316 1138 177 12 129 chrY 5529599 5529932 -19183147 - AluSg SINE Alu -6 294 1 269 325 31 24 chrY 5529957 5530249 -19182830 + L1 LINE L1 4521 4814 -1332 415 267 68 4 chrY 5530276 5530434 -19182645 + BSR/Beta Satellite Satellite 1 168 -11 233 227 11 45 chrY 5530562 5530650 -19182429 + L1M4 LINE L1 4966 5050 -1332 438 288 25 10 chrY 5530687 5530924 -19182155 + BSR/Beta Satellite Satellite 1 240 -40 768 266 70 67 chrY 5530994 5531226 -19181853 + BSR/Beta Satellite Satellite 35 270 -109 1716 185 0 7 chrY 5531226 5531523 -19181556 - AluSc SINE Alu -14 295 1 768 266 70 67 chrY 5531523 5531621 -19181458 + BSR/Beta Satellite Satellite 270 366 -13 1278 278 11 24 chrY 5531638 5533152 -19179927 + BSR/Beta Satellite Satellite 1 1495 -2 557 278 99 14 chrY 5533303 5533515 -19179564 + BSR/Beta Satellite Satellite 21 250 -129 2028 118 3 0 chrY 5533515 5533802 -19179277 + AluY SINE Alu 1 288 -23 568 107 64 4 chrY 5533802 5534041 -19179038 + (TA)n Simple_repeat Simple_repeat 1 253 0 530 311 6 9 chrY 5534048 5534517 -19178562 + BSR/Beta Satellite Satellite 1 467 -11 4158 113 2 0 chrY 5534592 5535178 -19177901 - LTR14C LTR ERVK 0 587 1 398 245 5 18 chrY 5535342 5535498 -19177581 + BSR/Beta Satellite Satellite 1 153 -15 532 279 14 28 chrY 5535531 5535922 -19177157 + BSR/Beta Satellite Satellite 1 385 -27 272 356 27 7 chrY 5536092 5536238 -19176841 + BSR/Beta Satellite Satellite 3 151 -1 616 335 12 2 chrY 5536266 5536619 -19176460 + BSR/Beta Satellite Satellite 1 356 -35 501 279 13 38 chrY 5536672 5537168 -19175911 + BSR/Beta Satellite Satellite 1 483 -7 423 257 20 46 chrY 5537189 5537438 -19175641 + BSR/Beta Satellite Satellite 1 242 -26 402 295 0 0 chrY 5537568 5537701 -19175378 + BSR/Beta Satellite Satellite 1 133 -64 1197 280 15 22 chrY 5537858 5538513 -19174566 + BSR/Beta Satellite Satellite 1 650 -52 570 262 6 29 chrY 5538740 5539391 -19173688 + BSR/Beta Satellite Satellite 1 635 0 1039 296 20 11 chrY 5539486 5540246 -19172833 + BSR/Beta Satellite Satellite 1 1082 -382 1471 243 0 0 chrY 5540246 5540551 -19172528 + AluSg SINE Alu 3 307 -3 1039 296 20 11 chrY 5540551 5540898 -19172181 + BSR/Beta Satellite Satellite 1082 1424 -40 980 291 27 16 chrY 5540975 5541775 -19171304 + BSR/Beta Satellite Satellite 1 809 -34 477 267 35 47 chrY 5541822 5542243 -19170836 + BSR/Beta Satellite Satellite 1 415 -3 569 282 18 19 chrY 5542255 5542656 -19170423 + BSR/Beta Satellite Satellite 1 400 -29 1053 283 9 6 chrY 5542722 5543044 -19170035 + BSR/Beta Satellite Satellite 41 363 -16 1073 321 0 2 chrY 5543060 5543521 -19169558 + BSR/Beta Satellite Satellite 1 460 -47 525 283 26 14 chrY 5543579 5544560 -19168519 + BSR/Beta Satellite Satellite 1 993 0 879 280 26 43 chrY 5544655 5545168 -19167911 + BSR/Beta Satellite Satellite 1 521 -2288 7612 55 0 1 chrY 5545168 5546413 -19166666 + L1PA4 LINE L1 4904 6147 -8 879 280 26 43 chrY 5546413 5547500 -19165579 + BSR/Beta Satellite Satellite 521 2797 -12 1022 287 13 15 chrY 5547745 5548643 -19164436 + BSR/Beta Satellite Satellite 1 896 -44 1107 295 8 10 chrY 5548713 5549322 -19163757 + BSR/Beta Satellite Satellite 1 607 -122 232 234 19 65 chrY 5549391 5549498 -19163581 + BSR/Beta Satellite Satellite 33 134 -2 * 346 310 0 0 chrY 5549424 5549528 -19163551 + BSR/Beta Satellite Satellite 1 104 -43 714 290 17 21 chrY 5549578 5550656 -19162423 + BSR/Beta Satellite Satellite 1 1073 0 1087 285 27 16 chrY 5550751 5551323 -19161756 + BSR/Beta Satellite Satellite 1 578 -42 366 240 115 0 chrY 5551305 5551401 -19161678 + AluSg/x SINE Alu 190 296 -4 * 319 329 11 30 chrY 5551403 5551602 -19161477 + BSR/Beta Satellite Satellite 1 195 -1 603 261 4 39 chrY 5551720 5552219 -19160860 + BSR/Beta Satellite Satellite 1 481 -10 391 337 28 4 chrY 5552409 5552610 -19160469 + BSR/Beta Satellite Satellite 1 205 -7 968 294 27 23 chrY 5552629 5553218 -19159861 + BSR/Beta Satellite Satellite 1 591 0 491 277 0 8 chrY 5553231 5553350 -19159729 + BSR/Beta Satellite Satellite 16 133 -9 265 347 21 0 chrY 5553437 5553532 -19159547 - BSR/Beta Satellite Satellite -16 136 40 618 264 20 30 chrY 5553622 5554102 -19158977 - BSR/Beta Satellite Satellite -4 475 1 499 242 33 16 chrY 5554128 5554308 -19158771 - BSR/Beta Satellite Satellite 0 183 1 331 315 5 0 chrY 5554374 5554524 -19158555 - BSR/Beta Satellite Satellite -23 150 1 16947 76 2 1 chrY 5554543 5557439 -19155640 - L1PA4 LINE L1 -3 6152 3254 10933 68 1 0 chrY 5557440 5558860 -19154219 + L1PA4 LINE L1 1849 3269 -2877 1218 276 11 20 chrY 5558860 5559513 -19153566 - BSR/Beta Satellite Satellite -49 647 1 461 245 24 69 chrY 5559537 5559740 -19153339 - BSR/Beta Satellite Satellite 0 193 1 1078 313 18 5 chrY 5559798 5560778 -19152301 - BSR/Beta Satellite Satellite -5 992 1 626 253 26 24 chrY 5560855 5561628 -19151451 - BSR/Beta Satellite Satellite 0 774 1 1170 299 7 6 chrY 5561677 5562220 -19150859 - BSR/Beta Satellite Satellite -44 543 1 1147 268 38 6 chrY 5562240 5562553 -19150526 - BSR/Beta Satellite Satellite -16 363 41 1243 259 32 22 chrY 5562567 5563439 -19149640 - BSR/Beta Satellite Satellite -45 880 1 354 318 60 0 chrY 5563542 5563727 -19149352 - BSR/Beta Satellite Satellite -7 196 1 437 301 0 0 chrY 5563845 5563958 -19149121 - BSR/Beta Satellite Satellite -27 115 3 609 265 10 39 chrY 5564023 5564467 -19148612 - BSR/Beta Satellite Satellite 0 431 1 1209 299 10 12 chrY 5564610 5565370 -19147709 - BSR/Beta Satellite Satellite -51 758 1 1037 267 22 26 chrY 5565490 5567234 -19145845 - BSR/Beta Satellite Satellite -2 1736 1 271 303 26 92 chrY 5567561 5567713 -19145366 - BSR/Beta Satellite Satellite 0 142 1 1083 302 22 5 chrY 5567746 5568127 -19144952 - BSR/Beta Satellite Satellite -49 387 1 493 279 43 42 chrY 5568216 5569153 -19143926 - BSR/Beta Satellite Satellite 0 937 1 565 280 8 18 chrY 5569177 5569791 -19143288 - BSR/Beta Satellite Satellite 0 607 1 527 261 44 22 chrY 5569988 5570263 -19142816 - BSR/Beta Satellite Satellite 0 281 1 923 305 19 12 chrY 5570373 5570698 -19142381 - BSR/Beta Satellite Satellite -27 352 26 548 277 26 26 chrY 5570806 5571596 -19141483 - BSR/Beta Satellite Satellite -4 996 175 197 0 0 67 chrY 5571596 5571626 -19141453 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 548 277 26 26 chrY 5571626 5571802 -19141277 - BSR/Beta Satellite Satellite -825 175 1 689 342 33 3 chrY 5571889 5572364 -19140715 - BSR/Beta Satellite Satellite -49 489 1 1006 327 3 9 chrY 5572382 5572715 -19140364 - BSR/Beta Satellite Satellite -16 363 33 1132 264 23 18 chrY 5572785 5573610 -19139469 - BSR/Beta Satellite Satellite -44 828 1 455 344 11 4 chrY 5573629 5573835 -19139244 - BSR/Beta Satellite Satellite -14 207 1 618 276 22 26 chrY 5573942 5574654 -19138425 - BSR/Beta Satellite Satellite 0 709 1 1244 290 28 22 chrY 5574705 5575443 -19137636 - BSR/Beta Satellite Satellite -25 742 1 517 271 29 27 chrY 5575534 5576569 -19136510 - BSR/Beta Satellite Satellite -5 1037 1 399 260 10 10 chrY 5576622 5576745 -19136334 - BSR/Beta Satellite Satellite -2 123 1 7290 149 6 10 chrY 5576745 5578726 -19134353 - L1PA6 LINE L1 -1 6153 4170 779 250 40 20 chrY 5578727 5578927 -19134152 - BSR/Beta Satellite Satellite -150 229 26 479 322 19 7 chrY 5579033 5579235 -19133844 - BSR/Beta Satellite Satellite -4 204 1 414 251 21 50 chrY 5579246 5579591 -19133488 - BSR/Beta Satellite Satellite 0 334 1 1065 294 15 19 chrY 5579605 5581285 -19131794 - BSR/Beta Satellite Satellite -2 1674 1 466 279 85 27 chrY 5581295 5581589 -19131490 - L1 LINE L1 -1314 5534 5224 1486 215 7 3 chrY 5581617 5581910 -19131169 + AluSc SINE Alu 1 294 -15 427 321 104 41 chrY 5581935 5582542 -19130537 - L1M4c LINE L1 -3294 3554 2910 239 143 20 0 chrY 5582563 5582612 -19130467 - L1M4c LINE L1 -4319 2530 2481 2953 184 32 10 chrY 5582625 5583223 -19129856 + LTR10E LTR ERV1 3 613 -20 300 359 14 9 chrY 5583226 5583438 -19129641 - L1M4c LINE L1 -4785 2065 1853 9126 51 0 4 chrY 5583469 5585323 -19127756 - L1PA4 LINE L1 -2 6153 4303 1677 205 0 0 chrY 5585803 5586101 -19126978 - AluSq SINE Alu -15 298 1 1249 263 34 15 chrY 5586277 5587555 -19125524 - BSR/Beta Satellite Satellite -44 1301 1 236 250 0 0 chrY 5587571 5587615 -19125464 + AluJ/monomer SINE Alu 1 44 -258 533 295 20 16 chrY 5587633 5587914 -19125165 - BSR/Beta Satellite Satellite 0 282 1 527 268 31 16 chrY 5587925 5588669 -19124410 - BSR/Beta Satellite Satellite 0 755 1 1341 292 32 2 chrY 5588720 5589477 -19123602 - BSR/Beta Satellite Satellite -13 779 1 337 296 24 8 chrY 5589569 5589752 -19123327 - BSR/Beta Satellite Satellite 0 185 1 970 298 10 12 chrY 5589781 5590171 -19122908 - BSR/Beta Satellite Satellite -44 892 503 254 28 0 28 chrY 5590171 5590207 -19122872 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 970 298 10 12 chrY 5590207 5590675 -19122404 - BSR/Beta Satellite Satellite -433 503 1 1174 281 15 9 chrY 5590698 5591924 -19121155 - BSR/Beta Satellite Satellite -45 1233 1 488 276 7 41 chrY 5592374 5592956 -19120123 - BSR/Beta Satellite Satellite 0 562 1 1117 305 5 14 chrY 5593096 5593835 -19119244 - BSR/Beta Satellite Satellite -51 732 1 546 280 48 15 chrY 5593930 5594888 -19118191 - BSR/Beta Satellite Satellite 0 989 1 905 324 4 3 chrY 5594927 5595397 -19117682 - BSR/Beta Satellite Satellite -44 470 1 827 254 36 61 chrY 5595414 5595509 -19117570 - BSR/Beta Satellite Satellite -16 363 267 1821 139 3 36 chrY 5595509 5595810 -19117269 + AluSc SINE Alu 11 301 -8 827 254 36 61 chrY 5595810 5596044 -19117035 - BSR/Beta Satellite Satellite -112 267 42 439 304 5 3 chrY 5596123 5596638 -19116441 - BSR/Beta Satellite Satellite -1 516 1 1645 199 3 3 chrY 5598590 5598881 -19114198 + AluSq SINE Alu 1 294 -19 255 93 0 0 chrY 5598881 5598924 -19114155 + (CATA)n Simple_repeat Simple_repeat 2 44 0 1645 199 3 3 chrY 5598924 5598939 -19114140 + AluSq SINE Alu 293 307 -6 2272 94 3 28 chrY 5599116 5599435 -19113644 + AluY SINE Alu 1 311 0 597 268 101 53 chrY 5599807 5600432 -19112647 + L1 LINE L1 2209 2867 -3279 1402 229 3 10 chrY 5600432 5600737 -19112342 - AluSc SINE Alu -6 303 1 597 268 101 53 chrY 5600737 5600756 -19112323 + L1 LINE L1 2867 2884 -3262 348 287 97 17 chrY 5600768 5601057 -19112022 + L1 LINE L1 4524 4835 -1311 836 282 43 8 chrY 5601063 5601534 -19111545 + BSR/Beta Satellite Satellite 1 454 -521 1717 173 0 14 chrY 5601534 5601812 -19111267 + AluSg SINE Alu 1 274 -36 836 282 43 8 chrY 5601812 5601994 -19111085 + BSR/Beta Satellite Satellite 454 962 -13 924 281 24 18 chrY 5602005 5602336 -19110743 + BSR/Beta Satellite Satellite 1 333 -46 617 270 11 28 chrY 5602399 5603587 -19109492 + BSR/Beta Satellite Satellite 1 1167 -30 1042 276 8 0 chrY 5603713 5603981 -19109098 + BSR/Beta Satellite Satellite 27 296 -83 336 293 35 17 chrY 5604049 5604273 -19108806 + BSR/Beta Satellite Satellite 1 228 0 555 260 10 27 chrY 5604456 5604961 -19108118 + BSR/Beta Satellite Satellite 1 496 -4 281 314 19 9 chrY 5605276 5605381 -19107698 + BSR/Beta Satellite Satellite 33 138 -14 1145 284 27 8 chrY 5605483 5606235 -19106844 + BSR/Beta Satellite Satellite 1 766 -34 968 274 11 31 chrY 5606306 5606932 -19106147 + BSR/Beta Satellite Satellite 1 613 -105 1607 166 4 4 chrY 5606983 5607242 -19105837 - AluSg SINE Alu -36 274 16 366 276 29 10 chrY 5607242 5607371 -19105708 - BSR/Beta Satellite Satellite -5 397 1 339 265 109 37 chrY 5607377 5607671 -19105408 - L1 LINE L1 -1311 4835 4521 540 254 113 62 chrY 5607679 5607698 -19105381 - L1 LINE L1 -3262 2884 2867 1391 228 10 16 chrY 5607698 5608005 -19105074 + AluSc SINE Alu 1 305 -4 540 254 113 62 chrY 5608005 5608628 -19104451 - L1 LINE L1 -3279 2867 2209 613 278 25 23 chrY 5608723 5609539 -19103540 + BSR/Beta Satellite Satellite 1 817 -50 956 309 27 9 chrY 5609553 5610335 -19102744 + BSR/Beta Satellite Satellite 1 795 -53 552 267 14 25 chrY 5610468 5611233 -19101846 + BSR/Beta Satellite Satellite 1 756 -42 1007 286 15 6 chrY 5611304 5611629 -19101450 + BSR/Beta Satellite Satellite 35 362 -17 903 288 17 2 chrY 5611650 5612098 -19100981 + BSR/Beta Satellite Satellite 1 454 -47 489 267 18 29 chrY 5612160 5613015 -19100064 + BSR/Beta Satellite Satellite 1 845 -8 335 307 34 8 chrY 5613032 5613231 -19099848 + BSR/Beta Satellite Satellite 1 204 0 1210 223 3 47 chrY 5613325 5613643 -19099436 + BSR/Beta Satellite Satellite 27 330 -49 264 325 58 8 chrY 5613968 5614088 -19098991 + BSR/Beta Satellite Satellite 12 137 -15 1226 265 31 0 chrY 5614191 5614516 -19098563 + BSR/Beta Satellite Satellite 1 335 -44 636 269 13 16 chrY 5614546 5615003 -19098076 + BSR/Beta Satellite Satellite 1 455 -41 706 309 40 13 chrY 5615096 5615394 -19097685 + BSR/Beta Satellite Satellite 58 363 -16 897 298 13 4 chrY 5615410 5615857 -19097222 + BSR/Beta Satellite Satellite 1 451 -55 496 241 26 45 chrY 5615914 5616247 -19096832 + BSR/Beta Satellite Satellite 1 326 -42 484 266 7 39 chrY 5616400 5617120 -19095959 + BSR/Beta Satellite Satellite 1 696 -38 352 346 12 6 chrY 5617265 5617524 -19095555 + BSR/Beta Satellite Satellite 1 260 -1 1165 253 14 17 chrY 5617547 5618309 -19094770 + BSR/Beta Satellite Satellite 1 760 -7 447 191 46 6 chrY 5618375 5618548 -19094531 + (TA)n Simple_repeat Simple_repeat 1 180 0 211 159 23 23 chrY 5618551 5618595 -19094484 + (TATATG)n Simple_repeat Simple_repeat 3 46 0 938 296 12 18 chrY 5618698 5619026 -19094053 + BSR/Beta Satellite Satellite 45 370 -9 566 356 12 3 chrY 5619043 5619363 -19093716 + BSR/Beta Satellite Satellite 9 331 -48 414 251 20 20 chrY 5619375 5619499 -19093580 + BSR/Beta Satellite Satellite 1 124 -43 597 287 17 13 chrY 5619575 5620593 -19092486 + BSR/Beta Satellite Satellite 1 1022 -60 900 290 22 19 chrY 5620759 5621073 -19092006 + BSR/Beta Satellite Satellite 38 352 -27 381 275 27 50 chrY 5621107 5621444 -19091635 + BSR/Beta Satellite Satellite 1 329 0 552 284 28 18 chrY 5621628 5622365 -19090714 + BSR/Beta Satellite Satellite 1 744 -51 292 366 21 0 chrY 5622414 5622556 -19090523 + BSR/Beta Satellite Satellite 2 146 -6 891 239 35 0 chrY 5622643 5622873 -19090206 + BSR/Beta Satellite Satellite 1 238 -141 612 269 14 28 chrY 5622983 5623759 -19089320 + BSR/Beta Satellite Satellite 1 765 -6 1007 286 31 9 chrY 5623855 5624180 -19088899 + BSR/Beta Satellite Satellite 21 352 -27 444 269 4 32 chrY 5624192 5624381 -19088698 + BSR/Beta Satellite Satellite 1 183 -27 36313 84 9 8 chrY 5624433 5630546 -19082533 - L1PA5 LINE L1 -12 6142 11 1384 270 90 10 chrY 5630557 5631548 -19081531 - L1M2 LINE L1 -736 5447 4400 1459 242 24 12 chrY 5631552 5632044 -19081035 + L1M2 LINE L1 3905 4402 -1744 1476 236 11 24 chrY 5632062 5632431 -19080648 + MER61B LTR ERV1 60 423 -2 414 165 51 0 chrY 5632450 5632529 -19080550 + MER61B-int LTR ERV1 19 101 -5116 1986 214 26 33 chrY 5632667 5633210 -19079869 + MER61B-int LTR ERV1 297 835 -4382 1370 144 31 8 chrY 5633220 5633476 -19079603 + MER61B-int LTR ERV1 952 1213 -4004 * 3896 173 24 14 chrY 5633471 5634385 -19078694 + MER61B-int LTR ERV1 1361 2283 -2934 2364 136 34 2 chrY 5634439 5634852 -19078227 + HERVL-A1 LTR ERVL 5229 5654 0 1840 201 14 3 chrY 5634852 5635206 -19077873 + MLT2A1 LTR ERVL 1 358 -86 198 71 0 0 chrY 5636093 5636121 -19076958 + (CAAAA)n Simple_repeat Simple_repeat 5 32 0 22 35 0 0 chrY 5636632 5636661 -19076418 + AT_rich Low_complexity Low_complexity 1 29 0 317 297 123 21 chrY 5636772 5637008 -19076071 + L1M4 LINE L1 2678 2937 -3209 761 347 84 34 chrY 5637157 5637743 -19075336 + L1M4 LINE L1 3132 3772 -2374 1265 203 153 24 chrY 5637743 5638122 -19074957 - MSTA LTR MaLR 0 428 1 761 347 84 34 chrY 5638122 5638354 -19074725 + L1M4 LINE L1 3772 3991 -2155 473 289 9 33 chrY 5638355 5638566 -19074513 + L1M4 LINE L1 4051 4256 -1890 442 243 19 0 chrY 5638734 5638841 -19074238 + MER2 DNA MER2_type 2 110 -235 1340 275 29 60 chrY 5639129 5639361 -19073718 + MER66B-int LTR ERV1 4548 4786 -2970 1908 176 0 0 chrY 5639361 5639656 -19073423 - AluSc SINE Alu -13 296 2 1340 275 29 60 chrY 5639656 5640548 -19072531 + MER66B-int LTR ERV1 4786 6189 -1567 1396 223 28 6 chrY 5640691 5641014 -19072065 + MER66B-int LTR ERV1 6347 6676 0 1244 222 92 58 chrY 5641014 5641482 -19071597 + MER66B LTR ERV1 1 484 -2 470 217 83 54 chrY 5641541 5641854 -19071225 + MER96B DNA MER1_type? 31 352 -65 1716 251 60 22 chrY 5641871 5642532 -19070547 - L1MC1 LINE L1 -22 6311 5588 348 243 66 52 chrY 5642555 5642691 -19070388 - L1MC1 LINE L1 -833 5511 5374 472 176 140 0 chrY 5642692 5642828 -19070251 + FRAM SINE Alu 21 175 -1 225 214 24 24 chrY 5642828 5642912 -19070167 + GA-rich Low_complexity Low_complexity 2 85 0 1164 220 12 4 chrY 5643007 5643248 -19069831 - AluSx SINE Alu -6 306 64 211 271 0 0 chrY 5643449 5643497 -19069582 + (TG)n Simple_repeat Simple_repeat 2 49 0 242 296 178 7 chrY 5643720 5643872 -19069207 - MIR SINE MIR -28 234 57 189 0 0 0 chrY 5643973 5643994 -19069085 + (A)n Simple_repeat Simple_repeat 1 21 0 7171 36 5 0 chrY 5644310 5646054 -19067025 + L1PA3 LINE L1 4466 6213 0 33 56 0 0 chrY 5646941 5646995 -19066084 + AT_rich Low_complexity Low_complexity 1 54 0 402 298 0 0 chrY 5648825 5648929 -19064150 + FLAM_C SINE Alu 3 106 -37 304 169 17 0 chrY 5648945 5649004 -19064075 - MER1B DNA MER1_type -13 326 267 1069 220 73 12 chrY 5649157 5649416 -19063663 - MER1B DNA MER1_type -64 275 1 23 0 0 0 chrY 5649439 5649462 -19063617 + AT_rich Low_complexity Low_complexity 1 23 0 722 211 46 59 chrY 5649523 5649760 -19063319 + AluJb SINE Alu 1 234 -78 4262 93 12 5 chrY 5649795 5650378 -19062701 - LTR14C LTR ERVK 0 587 1 14544 96 18 1 chrY 5650402 5652490 -19060589 - HERVK14C LTR ERVK -5 7412 5289 1012 95 0 7 chrY 5652482 5652630 -19060449 - HERVK14C LTR ERVK -4872 2545 2399 * 9830 127 8 1 chrY 5652615 5654157 -19058922 - HERVK14C LTR ERVK -5865 1552 1 4122 114 3 0 chrY 5654157 5654742 -19058337 - LTR14C LTR ERVK 0 587 1 262 200 31 0 chrY 5655220 5655285 -19057794 + (TA)n Simple_repeat Simple_repeat 2 68 0 298 163 0 0 chrY 5655285 5655334 -19057745 + LTR14C LTR ERVK 539 587 0 4158 154 15 28 chrY 5655678 5657056 -19056023 - pTR5 LTR ERV1 -29 2409 741 21 0 0 0 chrY 5660793 5660814 -19052265 + AT_rich Low_complexity Low_complexity 1 21 0 1671 166 0 0 chrY 5661198 5661463 -19051616 - AluSc SINE Alu -44 265 1 1958 117 3 49 chrY 5661779 5662087 -19050992 + AluY SINE Alu 5 298 -13 23 0 0 0 chrY 5662269 5662292 -19050787 + AT_rich Low_complexity Low_complexity 1 23 0 39786 43 22 2 chrY 5662292 5668309 -19044770 - L1PA2 LINE L1 -3 6152 13 854 279 27 44 chrY 5668586 5668883 -19044196 - AluJo SINE Alu -10 292 1 28 0 0 0 chrY 5668990 5669018 -19044061 + AT_rich Low_complexity Low_complexity 1 28 0 1173 248 22 3 chrY 5670352 5670670 -19042409 - L1MB5 LINE L1 -13 6161 5838 1079 224 106 22 chrY 5670707 5671113 -19041966 - L1MB5 LINE L1 -429 5745 5306 22 0 0 0 chrY 5671648 5671670 -19041409 + AT_rich Low_complexity Low_complexity 1 22 0 891 121 21 0 chrY 5672207 5672347 -19040732 + AluSp/q SINE Alu 171 313 0 1418 213 28 7 chrY 5673216 5673532 -19039547 - AluSg SINE Alu 0 310 3 1168 232 34 10 chrY 5674037 5674330 -19038749 + AluJb SINE Alu 3 302 0 449 264 64 7 chrY 5674602 5674742 -19038337 - MLT1A1 LTR MaLR -2 363 216 1885 139 7 3 chrY 5674743 5675030 -19038049 - AluSc SINE Alu 0 309 22 354 120 0 0 chrY 5675031 5675081 -19037998 - Alu SINE Alu -253 50 1 * 422 266 42 21 chrY 5675081 5675222 -19037857 - MLT1A1 LTR MaLR -141 224 81 596 278 43 36 chrY 5675229 5675531 -19037548 - LTR65-int LTR ERV1 -258 4678 4375 311 235 24 0 chrY 5675625 5675710 -19037369 - LTR65-int LTR ERV1 -721 4215 4129 1302 195 13 9 chrY 5675748 5675856 -19037223 - AluJb SINE Alu -80 232 126 186 43 0 0 chrY 5675856 5675879 -19037200 + (TTTG)n Simple_repeat Simple_repeat 1 23 0 1302 195 13 9 chrY 5675879 5676001 -19037078 - AluJb SINE Alu -186 126 1 1149 232 45 65 chrY 5676001 5676351 -19036728 - LTR65-int LTR ERV1 -805 4131 3791 2206 107 3 3 chrY 5676351 5676651 -19036428 + AluY SINE Alu 1 300 -11 1149 232 45 65 chrY 5676651 5676765 -19036314 - LTR65-int LTR ERV1 -1145 3791 3676 2118 131 23 0 chrY 5676866 5677171 -19035908 - AluSx SINE Alu 0 312 1 1660 251 55 39 chrY 5677302 5678263 -19034816 - LTR65-int LTR ERV1 -3647 1289 287 263 232 0 0 chrY 5678277 5678346 -19034733 + GA-rich Low_complexity Low_complexity 2 70 0 275 311 19 0 chrY 5679529 5679635 -19033444 - LTR65-int LTR ERV1 -4632 304 197 198 0 0 0 chrY 5680154 5680176 -19032903 + (A)n Simple_repeat Simple_repeat 1 22 0 180 0 0 0 chrY 5680460 5680480 -19032599 + (A)n Simple_repeat Simple_repeat 1 20 0 1916 301 46 55 chrY 5681431 5682551 -19030528 + L1M3de LINE L1 286 2053 -4600 27 49 0 0 chrY 5682555 5682596 -19030483 + AT_rich Low_complexity Low_complexity 1 41 0 1860 158 3 3 chrY 5682598 5682902 -19030177 + AluSx SINE Alu 3 306 -6 1354 286 100 61 chrY 5682907 5683683 -19029396 + L1M2c LINE L1 16 788 -6421 761 267 17 75 chrY 5683703 5684119 -19028960 + L1M2c LINE L1 1553 1944 -5265 253 351 16 42 chrY 5684120 5684311 -19028768 - L1MEc LINE L1 -5918 478 293 347 313 16 60 chrY 5684339 5684521 -19028558 - L1MEc LINE L1 -6184 212 39 1232 201 80 14 chrY 5684800 5685088 -19027991 - AluSx SINE Alu -4 308 2 1233 280 83 7 chrY 5685302 5685895 -19027184 - LTR65 LTR ERV1 -31 638 1 1298 207 30 30 chrY 5686484 5686789 -19026290 + AluSg SINE Alu 1 305 -5 778 232 0 24 chrY 5686852 5687016 -19026063 - FRAM SINE Alu -16 160 1 229 333 20 78 chrY 5687522 5687600 -19025479 + L2 LINE L2 3110 3176 -96 2209 111 0 3 chrY 5687600 5687898 -19025181 - AluY SINE Alu -14 297 1 229 333 20 78 chrY 5687898 5687972 -19025107 + L2 LINE L2 3176 3253 -19 240 35 0 0 chrY 5689963 5689992 -19023087 + (A)n Simple_repeat Simple_repeat 1 29 0 202 277 21 75 chrY 5690904 5690998 -19022081 + MIR SINE MIR 118 206 -56 453 295 7 0 chrY 5691078 5691217 -19021862 - MIR SINE MIR -25 237 98 940 257 23 36 chrY 5692107 5692410 -19020669 - MLT1E LTR MaLR -2 591 293 1451 218 3 24 chrY 5692584 5692877 -19020202 + AluJo SINE Alu 7 293 -19 199 365 66 7 chrY 5692904 5693041 -19020038 - L2 LINE L2 -2531 783 639 25 51 0 0 chrY 5693041 5693080 -19019999 + AT_rich Low_complexity Low_complexity 1 39 0 272 380 32 16 chrY 5693130 5693317 -19019762 - L2 LINE L2 -2854 460 271 1104 276 38 19 chrY 5693983 5694407 -19018672 - MLT1C LTR MaLR 0 467 36 22 0 0 0 chrY 5694439 5694461 -19018618 + AT_rich Low_complexity Low_complexity 1 22 0 2047 147 0 0 chrY 5695840 5696133 -19016946 + AluY SINE Alu 1 293 -18 25 110 0 0 chrY 5696144 5696253 -19016826 + AT_rich Low_complexity Low_complexity 1 109 0 28 0 0 0 chrY 5697012 5697040 -19016039 + AT_rich Low_complexity Low_complexity 1 28 0 1129 185 40 77 chrY 5697329 5697680 -19015399 + MLT1B LTR MaLR 1 338 -52 268 305 61 0 chrY 5698531 5698613 -19014466 + MIR SINE MIR 49 135 -127 404 283 25 8 chrY 5698785 5698905 -19014174 - MIR3 SINE MIR -21 187 66 193 193 57 91 chrY 5699680 5699768 -19013311 + L2 LINE L2 1550 1634 -1680 1815 149 20 3 chrY 5699947 5700248 -19012831 - AluSp SINE Alu -7 306 1 358 332 84 50 chrY 5700726 5701106 -19011973 + L2 LINE L2 2917 3309 -4 3180 158 32 0 chrY 5701212 5701774 -19011305 - LTR19B LTR ERV1 0 580 1 1153 149 0 34 chrY 5701793 5702001 -19011078 - HERVFH19I LTR ERV1 -20 7699 7499 * 2661 159 16 36 chrY 5701996 5702544 -19010535 - LTR19B-int LTR ERV1 -332 5254 4718 * 2918 115 9 26 chrY 5702543 5703202 -19009877 - LTR19B-int LTR ERV1 -489 6109 3889 207 0 0 0 chrY 5703202 5703225 -19009854 + (TTG)n Simple_repeat Simple_repeat 2 24 0 5791 21 0 0 chrY 5703225 5703887 -19009192 - L1PA3 LINE L1 -9 6146 5485 6258 30 0 6 chrY 5703887 5704692 -19008387 + L1P LINE L1 4595 5394 -752 2372 232 69 6 chrY 5704692 5705370 -19007709 - LTR19B-int LTR ERV1 -2098 3119 2399 744 239 18 18 chrY 5705358 5705630 -19007449 - LTR19B-int LTR ERV1 -3091 2126 1855 * 739 209 0 0 chrY 5705640 5705798 -19007281 - AluSc SINE Alu 0 305 148 24 0 0 0 chrY 5706326 5706350 -19006729 + AT_rich Low_complexity Low_complexity 1 24 0 4762 135 20 23 chrY 5707135 5707974 -19005105 - LTR19B-int LTR ERV1 -3621 1965 1129 3510 195 29 14 chrY 5707960 5708479 -19004600 - LTR19B-int LTR ERV1 -4665 921 307 * 306 50 0 0 chrY 5708479 5708519 -19004560 + (GA)n Simple_repeat Simple_repeat 2 41 0 3510 195 29 14 chrY 5708519 5708831 -19004248 - LTR19B-int LTR ERV1 -5279 307 1 1505 156 15 0 chrY 5708831 5709101 -19003978 - LTR19B LTR ERV1 0 580 307 2069 142 11 0 chrY 5709108 5709460 -19003619 - THE1B-int LTR MaLR -1224 356 1 229 88 0 0 chrY 5709460 5709494 -19003585 - THE1B LTR MaLR 0 364 331 42 77 0 0 chrY 5709730 5709821 -19003258 + AT_rich Low_complexity Low_complexity 1 91 0 782 302 97 38 chrY 5710116 5710537 -19002542 - MLT1J LTR MaLR -47 464 19 3441 183 34 43 chrY 5711640 5712626 -19000453 - MER11C LTR ERVK -4 1067 1 255 300 131 0 chrY 5712637 5712767 -19000312 + LTR67 LTR ERVL 403 549 -8 24 32 0 0 chrY 5712824 5712855 -19000224 + AT_rich Low_complexity Low_complexity 1 31 0 1654 141 35 28 chrY 5713257 5713547 -18999532 + AluSx SINE Alu 1 292 -20 23 0 0 0 chrY 5714544 5714567 -18998512 + AT_rich Low_complexity Low_complexity 1 23 0 268 254 76 0 chrY 5715024 5715142 -18997937 - L1M4 LINE L1 -1539 4607 4481 5731 113 18 18 chrY 5715747 5717089 -18995990 - L1PA7 LINE L1 -8 6146 4799 301 174 0 58 chrY 5717102 5717171 -18995908 + L1MC4 LINE L1 6641 6705 -1337 6359 141 32 3 chrY 5717229 5718376 -18994703 - L1PA7 LINE L1 -1350 4796 3616 1838 166 3 3 chrY 5718376 5718677 -18994402 - AluSx SINE Alu -6 306 6 517 110 0 0 chrY 5718864 5718937 -18994142 + AluYb8 SINE Alu 163 235 -83 1487 158 12 62 chrY 5719889 5720211 -18992868 + MER52C LTR ERV1 964 1269 -9 25 51 0 0 chrY 5720391 5720430 -18992649 + AT_rich Low_complexity Low_complexity 1 39 0 238 311 110 37 chrY 5721013 5721177 -18991902 - MIR SINE MIR -67 195 20 37647 78 7 2 chrY 5721440 5727562 -18985517 + L1PA4 LINE L1 1 6154 -1 374 354 107 28 chrY 5727656 5728151 -18984928 + L2 LINE L2 2427 2960 -354 512 257 7 14 chrY 5728212 5728352 -18984727 - MLT1D LTR MaLR -67 438 300 301 248 27 27 chrY 5728470 5728632 -18984447 - L1M4b LINE L1 -5285 1662 1366 15053 165 25 12 chrY 5728986 5729892 -18983187 - HERVK22 LTR ERVK -4004 2833 1940 2311 88 10 0 chrY 5729892 5730189 -18982890 - AluY SINE Alu -11 300 1 15053 165 25 12 chrY 5730189 5732035 -18981044 - HERVK22 LTR ERVK -4897 1940 45 2866 117 19 2 chrY 5732035 5732727 -18980352 - L1P2 LINE L1 -420 5734 5032 5215 121 70 0 chrY 5732738 5733510 -18979569 - LTR12 LTR ERV1 0 826 1 4804 113 13 8 chrY 5733510 5734271 -18978808 - HERV17 LTR ERV1 -11 8388 7621 1704 151 63 38 chrY 5734264 5735022 -18978057 - HERV17 LTR ERV1 -5156 1740 703 * 23960 126 30 21 chrY 5735009 5739819 -18973260 - HERV17 LTR ERV1 -3455 4944 1 5216 125 36 2 chrY 5739819 5740618 -18972461 - LTR12 LTR ERV1 0 826 1 683 148 0 0 chrY 5740619 5740734 -18972345 - L1P2 LINE L1 -1123 5023 4909 221 0 0 33 chrY 5741810 5741840 -18971239 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 23 0 0 0 chrY 5742381 5742404 -18970675 + AT_rich Low_complexity Low_complexity 1 23 0 21 71 0 0 chrY 5743725 5743767 -18969312 + AT_rich Low_complexity Low_complexity 1 42 0 32 0 0 0 chrY 5744016 5744048 -18969031 + AT_rich Low_complexity Low_complexity 1 32 0 317 0 0 65 chrY 5744145 5744191 -18968888 + (TTTTA)n Simple_repeat Simple_repeat 5 47 0 1504 212 11 0 chrY 5744196 5744479 -18968600 - AluSx SINE Alu -25 287 2 2005 109 27 0 chrY 5745107 5745401 -18967678 + AluY SINE Alu 10 311 0 2644 39 0 0 chrY 5745440 5745749 -18967330 - AluY SINE Alu -2 309 1 461 125 0 12 chrY 5748457 5748537 -18964542 + (TTCC)n Simple_repeat Simple_repeat 4 82 0 361 172 0 65 chrY 5749832 5749925 -18963154 + L1MA9 LINE L1 6078 6164 -148 22 0 0 0 chrY 5750080 5750102 -18962977 + AT_rich Low_complexity Low_complexity 1 22 0 7177 70 0 0 chrY 5750574 5752277 -18960802 + L1PA5 LINE L1 4439 6141 -13 1600 182 24 7 chrY 5752478 5752774 -18960305 - AluSq SINE Alu -12 301 1 22 0 0 0 chrY 5753139 5753161 -18959918 + AT_rich Low_complexity Low_complexity 1 22 0 2004 127 3 0 chrY 5753161 5753445 -18959634 + AluSc SINE Alu 1 285 -24 245 128 21 0 chrY 5753448 5753495 -18959584 + (TAA)n Simple_repeat Simple_repeat 2 49 0 341 275 29 54 chrY 5753662 5753873 -18959206 + L1ME LINE L1 5353 5556 -608 395 124 4 77 chrY 5754249 5754513 -18958566 + (TA)n Simple_repeat Simple_repeat 1 244 0 288 127 0 84 chrY 5754527 5754669 -18958410 + (TA)n Simple_repeat Simple_repeat 1 130 0 471 88 10 83 chrY 5754685 5754877 -18958202 + (TA)n Simple_repeat Simple_repeat 1 178 0 434 112 9 86 chrY 5755129 5755607 -18957472 + (TA)n Simple_repeat Simple_repeat 1 440 0 505 304 87 11 chrY 5755868 5756052 -18957027 - MIR SINE MIR -25 237 40 355 303 35 28 chrY 5756265 5756290 -18956789 + L1MDa LINE L1 2514 2537 -4003 3370 130 41 5 chrY 5756290 5756850 -18956229 + LTR19B LTR ERV1 1 580 0 355 303 35 28 chrY 5756850 5757141 -18955938 + L1MDa LINE L1 2537 2859 -3681 730 273 119 61 chrY 5757205 5757616 -18955463 + MLT2B1 LTR ERVL 5 439 -81 222 156 0 0 chrY 5757624 5757669 -18955410 + (TG)n Simple_repeat Simple_repeat 2 46 0 321 278 134 56 chrY 5759783 5760089 -18952990 + L2 LINE L2 2196 2525 -789 2670 42 0 3 chrY 5760288 5760600 -18952479 + AluY SINE Alu 1 311 0 299 301 55 35 chrY 5762039 5762295 -18950784 + L1M4 LINE L1 5257 5517 -657 24 0 0 0 chrY 5762414 5762438 -18950641 + AT_rich Low_complexity Low_complexity 1 24 0 30 0 0 0 chrY 5762577 5762607 -18950472 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chrY 5762700 5762729 -18950350 + AT_rich Low_complexity Low_complexity 1 29 0 27 29 0 0 chrY 5764348 5764382 -18948697 + AT_rich Low_complexity Low_complexity 1 34 0 25 51 0 0 chrY 5764524 5764563 -18948516 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chrY 5764669 5764690 -18948389 + AT_rich Low_complexity Low_complexity 1 21 0 3917 166 38 24 chrY 5764884 5765679 -18947400 + L1PA16 LINE L1 5359 6164 -2 21 0 0 0 chrY 5765679 5765700 -18947379 + AT_rich Low_complexity Low_complexity 1 21 0 594 235 0 0 chrY 5768161 5768280 -18944799 + MER41E LTR ERV1 1 119 -393 2261 159 53 127 chrY 5768663 5769398 -18943681 - LTR1 LTR ERV1 -104 681 1 252 231 39 0 chrY 5769573 5769625 -18943454 - LTR33A LTR ERVL -339 184 131 381 162 0 0 chrY 5769675 5769743 -18943336 + (CTA)n Simple_repeat Simple_repeat 1 68 0 2254 81 0 3 chrY 5769744 5770029 -18943050 - AluY SINE Alu -26 285 2 3296 84 0 2 chrY 5770399 5770849 -18942230 - L1PA5 LINE L1 -1795 4351 3903 7377 78 7 0 chrY 5770849 5772655 -18940424 + L1PA5 LINE L1 4354 6139 -15 526 252 0 0 chrY 5772806 5772921 -18940158 + MER41E LTR ERV1 1 115 -397 2689 163 25 94 chrY 5773290 5774037 -18939042 - LTR1 LTR ERV1 -89 696 1 260 231 65 145 chrY 5774209 5774395 -18938684 - LTR33A LTR ERVL -344 179 9 196 178 67 0 chrY 5774656 5774701 -18938378 - L2 LINE L2 -4 3309 3262 379 262 12 0 chrY 5775236 5775320 -18937759 - FRAM SINE Alu -13 153 69 186 43 0 0 chrY 5775356 5775379 -18937700 + (TTAA)n Simple_repeat Simple_repeat 2 24 0 541 162 10 10 chrY 5775390 5775489 -18937590 - FLAM_C SINE Alu -34 109 11 22 0 0 0 chrY 5777449 5777471 -18935608 + AT_rich Low_complexity Low_complexity 1 22 0 330 153 0 0 chrY 5777706 5777765 -18935314 + CT-rich Low_complexity Low_complexity 1 59 0 2051 123 3 0 chrY 5778999 5779316 -18933763 - L1PA6 LINE L1 0 6154 5837 635 121 10 0 chrY 5779317 5779416 -18933663 + L1P3 LINE L1 5433 5532 -622 271 300 64 21 chrY 5783606 5783746 -18929333 + MLT1F LTR MaLR 370 515 -27 1271 252 3 0 chrY 5784214 5784523 -18928556 + AluSx SINE Alu 1 310 -2 1416 194 0 31 chrY 5784574 5785001 -18928078 + AluSx SINE Alu 12 488 -48 510 17 0 0 chrY 5785001 5785060 -18928019 + (GAGAA)n Simple_repeat Simple_repeat 1 59 0 1416 194 0 31 chrY 5785060 5785108 -18927971 + AluSx SINE Alu 488 536 0 471 263 105 7 chrY 5785703 5785855 -18927224 - FRAM SINE Alu -9 167 1 252 325 8 26 chrY 5785973 5786090 -18926989 + MLT1E LTR MaLR 361 475 -118 274 176 20 0 chrY 5786132 5786183 -18926896 + L1MC/D LINE L1 5760 5811 -1997 238 301 19 0 chrY 5786179 5786232 -18926847 - L1P LINE L1 -2579 3567 3517 * 643 11 35 11 chrY 5786232 5786319 -18926760 + (TTTTA)n Simple_repeat Simple_repeat 2 90 0 238 301 19 0 chrY 5786319 5786368 -18926711 - L1P LINE L1 -2629 3517 3463 838 341 78 32 chrY 5787133 5787696 -18925383 - L1M3b LINE L1 -5675 606 18 1504 199 3 28 chrY 5787736 5788051 -18925028 + AluSg SINE Alu 1 308 0 240 306 18 36 chrY 5788152 5788263 -18924816 - L1M3de LINE L1 -5898 755 647 1455 211 58 50 chrY 5788274 5788690 -18924389 - MSTB LTR MaLR -7 419 1 386 346 59 72 chrY 5788720 5789026 -18924053 - L1M3de LINE L1 -5217 1436 1128 1925 157 0 3 chrY 5789026 5789325 -18923754 + AluSx SINE Alu 1 298 -14 386 346 59 72 chrY 5789325 5789608 -18923471 - L1M3de LINE L1 -5525 1128 605 24 32 0 0 chrY 5789854 5789885 -18923194 + AT_rich Low_complexity Low_complexity 1 31 0 305 192 55 0 chrY 5789885 5789958 -18923121 - L1MA4 LINE L1 -11 6289 6213 485 246 36 56 chrY 5789967 5790123 -18922956 + L1MA3 LINE L1 6019 6172 -133 1206 241 0 30 chrY 5790123 5790426 -18922653 + AluJo SINE Alu 2 295 -17 485 246 36 56 chrY 5790426 5790464 -18922615 + L1MA3 LINE L1 6172 6209 -96 1586 198 3 14 chrY 5790499 5790787 -18922292 - AluSx SINE Alu -25 287 3 1308 204 38 4 chrY 5791274 5791539 -18921540 + AluSg SINE Alu 15 288 -22 1158 226 109 19 chrY 5793461 5793893 -18919186 + L1MB5 LINE L1 5254 5746 -428 1079 255 68 9 chrY 5793919 5794244 -18918835 + L1MB5 LINE L1 5818 6161 -13 21 71 0 0 chrY 5794644 5794686 -18918393 + AT_rich Low_complexity Low_complexity 1 42 0 16307 58 11 0 chrY 5795339 5798201 -18914878 + L1PA4 LINE L1 3259 6152 -3 27 0 0 0 chrY 5798428 5798455 -18914624 + AT_rich Low_complexity Low_complexity 1 27 0 836 301 33 18 chrY 5798563 5798835 -18914244 + AluJo SINE Alu 1 276 -36 290 98 20 0 chrY 5800263 5800314 -18912765 + (TTTA)n Simple_repeat Simple_repeat 1 52 0 1619 165 4 7 chrY 5800314 5800593 -18912486 - AluSg SINE Alu -32 278 1 2071 142 0 0 chrY 5802603 5802906 -18910173 + AluSc SINE Alu 1 303 -6 1884 167 10 7 chrY 5803369 5803675 -18909404 - AluSc SINE Alu -2 307 1 26 30 0 0 chrY 5804958 5804991 -18908088 + AT_rich Low_complexity Low_complexity 1 33 0 21 57 0 0 chrY 5805437 5805472 -18907607 + AT_rich Low_complexity Low_complexity 1 35 0 824 254 27 9 chrY 5805540 5805764 -18907315 - AluJb SINE Alu -82 230 3 299 190 0 0 chrY 5806192 5806250 -18906829 + Charlie3 DNA MER1_type 2636 2693 -17 512 235 0 0 chrY 5806261 5806359 -18906720 - AluJ/FLAM SINE Alu -212 100 3 1655 179 7 3 chrY 5811393 5811678 -18901401 - AluSx SINE Alu -26 286 1 1723 177 7 36 chrY 5813455 5813547 -18899532 - AluSx SINE Alu -16 296 203 2506 45 7 3 chrY 5813547 5813855 -18899224 - AluY SINE Alu -2 309 1 1723 177 7 36 chrY 5813855 5814067 -18899012 - AluSx SINE Alu -109 203 1 1187 221 14 11 chrY 5814067 5814352 -18898727 - AluJo SINE Alu -14 298 13 745 260 23 61 chrY 5815295 5815641 -18897438 - L1M4 LINE L1 -421 5753 5421 362 264 77 65 chrY 5815642 5815903 -18897176 - L1M4 LINE L1 -782 5364 5101 23 68 0 0 chrY 5816019 5816063 -18897016 + AT_rich Low_complexity Low_complexity 1 44 0 2703 136 0 7 chrY 5816136 5816562 -18896517 - L1PA8A LINE L1 -1 6130 5708 329 271 39 8 chrY 5816601 5816730 -18896349 - L1M4 LINE L1 -1968 4178 4046 1144 177 0 5 chrY 5816753 5816951 -18896128 - MER107 DNA MER1_type 0 197 1 248 247 139 25 chrY 5816951 5817109 -18895970 + L1M4 LINE L1 4965 5140 -1006 382 286 157 43 chrY 5817442 5817767 -18895312 + L1MDa LINE L1 2261 2622 -3918 318 272 25 0 chrY 5817851 5817932 -18895147 + L1MD2 LINE L1 6017 6099 -260 22 0 0 0 chrY 5818082 5818104 -18894975 + AT_rich Low_complexity Low_complexity 1 22 0 302 315 96 10 chrY 5818336 5818533 -18894546 + L1MC4a LINE L1 6407 6620 -1188 4963 200 14 5 chrY 5818597 5819704 -18893375 - L1P LINE L1 -1902 4244 3128 22 0 0 0 chrY 5819705 5819727 -18893352 + AT_rich Low_complexity Low_complexity 1 22 0 1140 174 60 23 chrY 5820128 5820427 -18892652 + L1P LINE L1 2755 3064 -3082 2551 164 14 115 chrY 5820427 5820813 -18892266 + LTR25 LTR ERV1 1 294 -500 198 0 0 0 chrY 5820813 5820835 -18892244 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2551 164 14 115 chrY 5820835 5821107 -18891972 + LTR25 LTR ERV1 294 592 -202 238 126 74 11 chrY 5821107 5821202 -18891877 + (TA)n Simple_repeat Simple_repeat 2 102 0 26 0 0 0 chrY 5821440 5821466 -18891613 + AT_rich Low_complexity Low_complexity 1 26 0 1614 159 0 8 chrY 5821852 5822109 -18890970 + AluSg SINE Alu 1 255 -55 742 237 33 17 chrY 5822243 5822543 -18890536 + L1MC1 LINE L1 4496 4800 -1346 1928 237 78 21 chrY 5822560 5823408 -18889671 + L1MC1 LINE L1 5333 6311 -22 269 234 72 48 chrY 5823425 5823592 -18889487 - MER96B DNA MER1_type? -65 352 182 1350 147 215 4 chrY 5823593 5823872 -18889207 - LTR12 LTR ERV1 -376 338 1 1323 288 22 35 chrY 5823880 5824789 -18888290 - MER66-int LTR ERV1 -1567 6189 4835 2089 152 0 0 chrY 5824789 5825086 -18887993 + AluSc SINE Alu 1 297 -12 1323 288 22 35 chrY 5825086 5825316 -18887763 - MER66-int LTR ERV1 -2921 4835 4604 503 215 19 0 chrY 5825611 5825718 -18887361 - MER2 DNA MER2_type -235 110 2 279 330 14 38 chrY 5825885 5826097 -18886982 - L1M4 LINE L1 -1889 4257 4051 369 165 35 12 chrY 5826326 5826411 -18886668 + MSTA LTR MaLR 3 89 -339 5666 133 137 116 chrY 5826411 5828072 -18885007 + pTR5 LTR ERV1 743 2438 0 908 227 144 11 chrY 5828094 5828358 -18884721 + MSTA LTR MaLR 130 428 0 838 305 141 30 chrY 5828403 5829204 -18883875 - L1M4 LINE L1 -2448 3698 2809 623 82 0 31 chrY 5829235 5829333 -18883746 - L1PA4 LINE L1 -2 6153 6059 1258 65 0 0 chrY 5829333 5829503 -18883576 + L1PA4 LINE L1 5711 5880 -275 32 95 0 0 chrY 5830028 5830123 -18882956 + AT_rich Low_complexity Low_complexity 1 95 0 2064 82 0 4 chrY 5830251 5830518 -18882561 + AluY SINE Alu 23 288 -23 1989 160 17 3 chrY 5831483 5831839 -18881240 - MLT2A1 LTR ERVL -83 361 1 2618 113 12 16 chrY 5831839 5832265 -18880814 - HERVL-A1 LTR ERVL 0 5654 5231 1281 162 32 40 chrY 5832320 5832622 -18880457 - MER61B-int LTR ERV1 -2936 2281 1981 2365 67 17 0 chrY 5832622 5832920 -18880159 - AluY SINE Alu -8 303 1 1281 162 32 40 chrY 5832920 5832963 -18880116 - MER61B-int LTR ERV1 -3236 1981 1939 249 33 0 0 chrY 5833018 5833048 -18880031 + (GAAAA)n Simple_repeat Simple_repeat 4 33 0 462 256 0 16 chrY 5833065 5833186 -18879893 - MER61B-int LTR ERV1 -4819 398 280 538 150 47 63 chrY 5833247 5833374 -18879705 - MER61B-int LTR ERV1 -5074 143 19 649 262 21 5 chrY 5833391 5833508 -18879571 - MER61B LTR ERV1 0 425 302 183 42 0 0 chrY 5833508 5833532 -18879547 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 649 262 21 5 chrY 5833532 5833605 -18879474 - MER61B LTR ERV1 -123 302 232 28507 38 3 0 chrY 5833673 5838123 -18874956 - L1PA3 LINE L1 0 6155 1695 5688 72 1 1 chrY 5838142 5838945 -18874134 + L1PA3 LINE L1 900 1702 -4444 462 275 16 15 chrY 5838945 5839192 -18873887 - BSR/Beta Satellite Satellite -285 247 1 428 288 28 0 chrY 5839256 5839404 -18873675 - BSR/Beta Satellite Satellite -7 152 1 1187 270 14 8 chrY 5839417 5840072 -18873007 - BSR/Beta Satellite Satellite -44 659 1 551 271 14 37 chrY 5840362 5841078 -18872001 - BSR/Beta Satellite Satellite 0 699 1 2824 19 0 0 chrY 5841118 5841429 -18871650 - AluY SINE Alu 0 311 1 536 246 28 46 chrY 5841692 5841940 -18871139 - BSR/Beta Satellite Satellite -4 243 1 892 263 22 76 chrY 5841970 5842327 -18870752 - BSR/Beta Satellite Satellite -21 358 21 492 295 20 20 chrY 5842447 5842832 -18870247 - BSR/Beta Satellite Satellite 0 384 1 532 273 17 32 chrY 5842844 5843489 -18869590 - BSR/Beta Satellite Satellite 0 635 1 431 316 0 0 chrY 5843556 5843681 -18869398 - BSR/Beta Satellite Satellite 0 125 1 761 327 6 9 chrY 5843696 5844020 -18869059 - BSR/Beta Satellite Satellite -48 331 9 833 282 6 58 chrY 5844037 5844381 -18868698 - BSR/Beta Satellite Satellite -9 370 45 245 253 35 23 chrY 5844395 5844482 -18868597 - BSR/Beta Satellite Satellite -46 96 9 519 138 52 17 chrY 5844504 5844678 -18868401 + (TA)n Simple_repeat Simple_repeat 1 180 0 1040 259 24 16 chrY 5844744 5845525 -18867554 - BSR/Beta Satellite Satellite -69 786 1 395 330 18 0 chrY 5845613 5845781 -18867298 - BSR/Beta Satellite Satellite -8 170 1 533 277 14 35 chrY 5845832 5846612 -18866467 - BSR/Beta Satellite Satellite -44 763 1 580 239 10 58 chrY 5846778 5847103 -18865976 - BSR/Beta Satellite Satellite 0 309 1 360 298 14 0 chrY 5847131 5847275 -18865804 - BSR/Beta Satellite Satellite 0 146 1 838 296 32 35 chrY 5847291 5847960 -18865119 - BSR/Beta Satellite Satellite -4 666 1 629 228 0 0 chrY 5848074 5848197 -18864882 - BSR/Beta Satellite Satellite -9 133 11 589 290 14 23 chrY 5848209 5848496 -18864583 - BSR/Beta Satellite Satellite 0 284 1 1216 281 25 0 chrY 5848532 5848859 -18864220 - BSR/Beta Satellite Satellite -44 335 1 303 352 16 8 chrY 5848964 5849089 -18863990 - BSR/Beta Satellite Satellite -15 137 12 238 278 35 7 chrY 5849160 5849241 -18863838 - BSR/Beta Satellite Satellite -68 148 1 1217 238 0 0 chrY 5849417 5849669 -18863410 - BSR/Beta Satellite Satellite -106 273 22 475 279 23 33 chrY 5849760 5850553 -18862526 - BSR/Beta Satellite Satellite -3 785 1 492 272 3 25 chrY 5850568 5850838 -18862241 - BSR/Beta Satellite Satellite 0 263 1 1095 300 28 3 chrY 5850910 5851717 -18861362 - BSR/Beta Satellite Satellite -16 827 1 720 261 26 36 chrY 5851792 5852557 -18860522 - BSR/Beta Satellite Satellite -18 757 1 1253 280 20 44 chrY 5852604 5853528 -18859551 - BSR/Beta Satellite Satellite -9 902 1 475 295 17 32 chrY 5853562 5853985 -18859094 - BSR/Beta Satellite Satellite 0 416 1 545 295 12 4 chrY 5853999 5854199 -18858880 - BSR/Beta Satellite Satellite -25 201 1 970 266 21 37 chrY 5854210 5854486 -18858593 - BSR/Beta Satellite Satellite -42 271 1 273 358 27 14 chrY 5854514 5854662 -18858417 - BSR/Beta Satellite Satellite -1 151 2 670 261 5 25 chrY 5854950 5855233 -18857846 - BSR/Beta Satellite Satellite 0 277 1 447 306 4 16 chrY 5855256 5855455 -18857624 - BSR/Beta Satellite Satellite -10 196 1 264 352 0 0 chrY 5855530 5855635 -18857444 - BSR/Beta Satellite Satellite -36 106 2 930 315 14 15 chrY 5855707 5856343 -18856736 - BSR/Beta Satellite Satellite -49 635 1 506 238 28 28 chrY 5856458 5856784 -18856295 - BSR/Beta Satellite Satellite -1 326 1 1149 269 17 37 chrY 5856795 5857198 -18855881 - BSR/Beta Satellite Satellite -1 2023 1614 1611 238 69 19 chrY 5857198 5857661 -18855418 + LTR22B LTR ERVK 5 490 -2 1149 269 17 37 chrY 5857661 5858859 -18854220 - BSR/Beta Satellite Satellite -410 1614 1 568 224 31 60 chrY 5858913 5859341 -18853738 - BSR/Beta Satellite Satellite 0 415 1 869 291 31 17 chrY 5859391 5859680 -18853399 - BSR/Beta Satellite Satellite -64 315 23 528 317 15 3 chrY 5859770 5860040 -18853039 - BSR/Beta Satellite Satellite -2 273 1 517 260 33 29 chrY 5860052 5860757 -18852322 - BSR/Beta Satellite Satellite 0 707 1 1153 300 15 4 chrY 5860886 5861665 -18851414 - BSR/Beta Satellite Satellite -9 787 1 1928 147 7 3 chrY 5861784 5862077 -18851002 + AluY SINE Alu 1 294 -17 1217 274 39 16 chrY 5862084 5862920 -18850159 - BSR/Beta Satellite Satellite -15 855 1 268 344 15 8 chrY 5862983 5863114 -18849965 - BSR/Beta Satellite Satellite -7 145 14 611 269 15 31 chrY 5863268 5864055 -18849024 - BSR/Beta Satellite Satellite -11 774 1 493 282 32 36 chrY 5864104 5864407 -18848672 - BSR/Beta Satellite Satellite -4 301 1 1255 264 31 12 chrY 5864433 5864770 -18848309 - BSR/Beta Satellite Satellite -49 343 1 944 278 19 20 chrY 5864861 5866443 -18846636 - BSR/Beta Satellite Satellite -46 1581 1 1209 268 16 26 chrY 5866459 5867694 -18845385 - BSR/Beta Satellite Satellite -4 1222 1 1665 160 7 29 chrY 5867758 5868039 -18845040 - AluSg SINE Alu -35 275 1 1169 283 5 7 chrY 5868061 5868840 -18844239 - BSR/Beta Satellite Satellite -1 777 1 446 284 24 10 chrY 5868920 5869152 -18843927 - BSR/Beta Satellite Satellite -11 235 1 1226 281 20 7 chrY 5869166 5869662 -18843417 - BSR/Beta Satellite Satellite -47 502 1 286 343 14 63 chrY 5869765 5869908 -18843171 - BSR/Beta Satellite Satellite -15 137 2 1126 298 12 21 chrY 5870049 5871577 -18841502 - BSR/Beta Satellite Satellite -58 1513 1 632 275 14 35 chrY 5871649 5872887 -18840192 - BSR/Beta Satellite Satellite -4 1212 1 1022 280 52 11 chrY 5872924 5873265 -18839814 - BSR/Beta Satellite Satellite -46 354 1 7004 87 2 0 chrY 5873265 5874496 -18838583 + L1PA6 LINE L1 4922 6154 0 664 296 0 0 chrY 5874564 5874733 -18838346 - BSR/Beta Satellite Satellite -13 366 198 1876 157 0 7 chrY 5874795 5875094 -18837985 - AluSg1 SINE Alu -4 305 9 425 266 24 8 chrY 5875105 5875229 -18837850 - BSR/Beta Satellite Satellite -219 160 35 589 262 9 14 chrY 5875299 5875572 -18837507 - BSR/Beta Satellite Satellite 0 271 1 668 279 74 17 chrY 5875578 5875876 -18837203 - L1 LINE L1 -1311 4835 4521 1110 209 5 5 chrY 5875905 5876125 -18836954 + AluSc SINE Alu 1 220 -89 667 266 96 53 chrY 5876157 5876327 -18836752 - L1M4c LINE L1 -3264 3118 2957 2534 57 0 10 chrY 5876327 5876641 -18836438 - AluY SINE Alu 0 311 1 667 266 96 53 chrY 5876641 5877116 -18835963 - L1M4c LINE L1 -3425 2957 2445 359 313 58 24 chrY 5877140 5877434 -18835645 - L1M4c LINE L1 -4723 1661 1358 238 209 0 0 chrY 5877829 5877872 -18835207 - L1M4c LINE L1 -5192 1121 1079 1640 193 24 0 chrY 5877918 5878391 -18834688 - AluSq SINE Alu 0 313 12 442 274 22 27 chrY 5880356 5880837 -18832242 + BSR/Beta Satellite Satellite 1 478 -51 652 284 29 83 chrY 5880905 5881163 -18831916 + BSR/Beta Satellite Satellite 29 265 -114 1498 172 21 31 chrY 5881163 5881453 -18831626 - AluY SINE Alu -14 297 11 652 284 29 83 chrY 5881453 5881543 -18831536 + BSR/Beta Satellite Satellite 265 358 -21 1088 273 25 17 chrY 5881563 5883095 -18829984 + BSR/Beta Satellite Satellite 1 1544 -14 1225 283 6 17 chrY 5883203 5883782 -18829297 + BSR/Beta Satellite Satellite 1 572 -43 475 277 56 27 chrY 5883837 5884090 -18828989 + BSR/Beta Satellite Satellite 1 245 -348 414 0 0 0 chrY 5884090 5884136 -18828943 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 475 277 56 27 chrY 5884136 5884359 -18828720 + BSR/Beta Satellite Satellite 245 537 -56 1242 286 13 22 chrY 5884388 5885391 -18827688 + BSR/Beta Satellite Satellite 1 994 -50 1181 270 25 12 chrY 5885405 5885731 -18827348 + BSR/Beta Satellite Satellite 41 370 -9 730 346 4 4 chrY 5885749 5886193 -18826886 + BSR/Beta Satellite Satellite 1 444 -53 254 49 0 24 chrY 5886210 5886251 -18826828 + (CAAAAA)n Simple_repeat Simple_repeat 2 41 0 548 265 19 30 chrY 5886253 5886652 -18826427 + BSR/Beta Satellite Satellite 1 394 0 324 259 9 62 chrY 5886716 5886907 -18826172 + BSR/Beta Satellite Satellite 1 180 -5 1412 296 8 2 chrY 5887001 5887776 -18825303 + BSR/Beta Satellite Satellite 1 779 -3 593 269 22 19 chrY 5887864 5888914 -18824165 + BSR/Beta Satellite Satellite 1 1052 -7 1298 256 31 20 chrY 5888999 5889602 -18823477 + BSR/Beta Satellite Satellite 1 609 -53 311 370 16 0 chrY 5889869 5889996 -18823083 + BSR/Beta Satellite Satellite 10 138 -14 1656 185 4 0 chrY 5890032 5890308 -18822771 + AluJo SINE Alu 15 291 -21 493 253 16 55 chrY 5890370 5890552 -18822527 - L1MC4a LINE L1 -1941 5867 5693 1329 263 28 4 chrY 5890621 5891045 -18822034 + BSR/Beta Satellite Satellite 1 433 0 532 278 24 18 chrY 5891099 5891481 -18821598 + BSR/Beta Satellite Satellite 1 384 0 12165 55 0 1 chrY 5895164 5896664 -18816415 - L1PA4 LINE L1 -841 5305 3807 6943 60 1 0 chrY 5896664 5897491 -18815588 + L1PA4 LINE L1 5325 6153 -2 502 297 12 25 chrY 5900699 5901164 -18811915 + BSR/Beta Satellite Satellite 1 458 -43 1251 231 48 6 chrY 5901235 5901551 -18811528 + BSR/Beta Satellite Satellite 35 363 -16 961 312 6 6 chrY 5901575 5901899 -18811180 + BSR/Beta Satellite Satellite 9 332 -47 342 364 0 0 chrY 5902072 5902201 -18810878 + BSR/Beta Satellite Satellite 9 137 -5 591 252 40 22 chrY 5902263 5903117 -18809962 + BSR/Beta Satellite Satellite 1 868 0 1044 269 13 7 chrY 5903207 5903515 -18809564 + BSR/Beta Satellite Satellite 21 330 -49 674 270 12 30 chrY 5903582 5904690 -18808389 + BSR/Beta Satellite Satellite 1 1087 -37 269 354 17 0 chrY 5904869 5904998 -18808081 + BSR/Beta Satellite Satellite 2 241 -20 1121 237 26 8 chrY 5905103 5905543 -18807536 + BSR/Beta Satellite Satellite 1 447 -14 478 279 19 24 chrY 5905584 5906641 -18806438 + BSR/Beta Satellite Satellite 1 1051 -6 982 264 17 20 chrY 5906738 5907033 -18806046 + BSR/Beta Satellite Satellite 22 315 -64 418 305 31 19 chrY 5907083 5907496 -18805583 + BSR/Beta Satellite Satellite 1 417 -6 429 288 26 29 chrY 5907619 5907829 -18805250 + BSR/Beta Satellite Satellite 1 209 -1 469 285 27 14 chrY 5907840 5908307 -18804772 + BSR/Beta Satellite Satellite 1 473 -14 227 336 32 8 chrY 5908377 5908502 -18804577 + BSR/Beta Satellite Satellite 22 149 -3 1235 259 26 2 chrY 5908624 5909049 -18804030 + BSR/Beta Satellite Satellite 1 435 0 451 285 13 14 chrY 5909061 5909442 -18803637 + BSR/Beta Satellite Satellite 1 380 -44 1132 287 9 6 chrY 5909507 5910192 -18802887 + BSR/Beta Satellite Satellite 1 686 -44 628 262 17 18 chrY 5910265 5911270 -18801809 + BSR/Beta Satellite Satellite 1 1003 -43 1126 286 8 16 chrY 5911401 5912018 -18801061 + BSR/Beta Satellite Satellite 1 612 -15 295 341 0 8 chrY 5912040 5912163 -18800916 + BSR/Beta Satellite Satellite 3 124 -18 491 271 5 23 chrY 5912305 5912926 -18800153 + BSR/Beta Satellite Satellite 1 609 -19 358 342 26 21 chrY 5913089 5913291 -18799788 + BSR/Beta Satellite Satellite 1 202 -7 1251 263 18 27 chrY 5913311 5913560 -18799519 + BSR/Beta Satellite Satellite 1 251 -905 2167 109 0 3 chrY 5913560 5913853 -18799226 + AluY SINE Alu 1 292 -19 1251 263 18 27 chrY 5913853 5914478 -18798601 + BSR/Beta Satellite Satellite 251 1156 0 901 303 12 11 chrY 5914513 5915431 -18797648 + BSR/Beta Satellite Satellite 1 918 0 228 281 26 61 chrY 5915443 5915557 -18797522 + BSR/Beta Satellite Satellite 33 142 0 321 310 21 17 chrY 5915569 5915740 -18797339 + BSR/Beta Satellite Satellite 1 171 -44 2292 48 3 3 chrY 5915747 5916036 -18797043 - L1PA4 LINE L1 -3 6152 5864 367 276 78 17 chrY 5916046 5916293 -18796786 + BSR/Beta Satellite Satellite 1 262 -7 1154 271 9 5 chrY 5916469 5917220 -18795859 + BSR/Beta Satellite Satellite 1 753 -47 384 274 0 0 chrY 5917309 5917413 -18795666 + BSR/Beta Satellite Satellite 1 104 -62 549 277 28 19 chrY 5917446 5918329 -18794750 + BSR/Beta Satellite Satellite 1 890 0 1244 261 13 0 chrY 5918417 5918720 -18794359 + BSR/Beta Satellite Satellite 19 325 -54 537 293 7 12 chrY 5918815 5919486 -18793593 + BSR/Beta Satellite Satellite 1 667 -15 657 226 11 71 chrY 5919517 5919874 -18793205 + BSR/Beta Satellite Satellite 1 335 -2 1184 296 19 11 chrY 5920089 5920814 -18792265 + BSR/Beta Satellite Satellite 1 730 -17 1666 188 7 10 chrY 5920823 5921121 -18791958 + AluSq SINE Alu 1 297 -16 627 263 14 15 chrY 5921154 5921531 -18791548 + BSR/Beta Satellite Satellite 1 376 0 870 303 9 19 chrY 5921570 5921894 -18791185 + BSR/Beta Satellite Satellite 43 363 -16 729 326 7 0 chrY 5921914 5922202 -18790877 + BSR/Beta Satellite Satellite 5 294 -85 400 275 35 0 chrY 5922250 5922367 -18790712 + BSR/Beta Satellite Satellite 1 121 -44 529 265 18 21 chrY 5922430 5923525 -18789554 + BSR/Beta Satellite Satellite 1 1091 -46 962 277 14 14 chrY 5923590 5923868 -18789211 + BSR/Beta Satellite Satellite 21 298 -81 334 302 25 25 chrY 5923952 5924129 -18788950 + BSR/Beta Satellite Satellite 1 177 -15 642 260 16 33 chrY 5924408 5925032 -18788047 + BSR/Beta Satellite Satellite 1 613 -19 902 311 16 5 chrY 5925186 5925613 -18787466 + BSR/Beta Satellite Satellite 1 432 -49 403 260 13 27 chrY 5925676 5925843 -18787236 + BSR/Beta Satellite Satellite 1 164 -21 1560 268 68 12 chrY 5925849 5926863 -18786216 - L1M3 LINE L1 -702 5481 4414 1477 244 27 10 chrY 5926882 5927370 -18785709 + L1M3 LINE L1 3905 4400 -1746 1526 236 57 17 chrY 5927540 5927827 -18785252 + MER61B LTR ERV1 1 310 -115 207 0 0 0 chrY 5927827 5927850 -18785229 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1526 236 57 17 chrY 5927850 5927968 -18785111 + MER61B LTR ERV1 310 422 -3 527 140 61 35 chrY 5927979 5928093 -18784986 + MER61B-int LTR ERV1 14 130 -5087 2092 211 32 29 chrY 5928170 5928728 -18784351 + MER61B-int LTR ERV1 280 839 -4378 1407 160 11 0 chrY 5928729 5928991 -18784088 + MER61B-int LTR ERV1 944 1208 -4009 10011 158 25 13 chrY 5928998 5931051 -18782028 + MER61B-int LTR ERV1 1571 3522 -1695 4963 196 41 25 chrY 5931034 5932170 -18780909 + MER61B-int LTR ERV1 4060 5213 -4 * 2221 194 7 16 chrY 5932173 5932600 -18780479 + MER61B LTR ERV1 1 423 -2 283 298 133 0 chrY 5932609 5932797 -18780282 - L1 LINE L1 -1272 4874 4662 1344 234 4 0 chrY 5932839 5933100 -18779979 + AluJb SINE Alu 24 285 -27 232 286 60 43 chrY 5933283 5933468 -18779611 - L1 LINE L1 -3312 2834 2647 385 236 85 113 chrY 5933479 5933973 -18779106 - L1M4 LINE L1 -1308 3499 895 366 200 1 0 chrY 5934404 5934484 -18778595 - AluS SINE Alu -3 297 227 562 258 0 0 chrY 5934505 5934629 -18778450 - AluSq/x SINE Alu -180 133 10 1318 225 20 43 chrY 5935553 5935900 -18777179 - LTR32 LTR ERVL -21 450 112 23424 55 5 2 chrY 5935937 5939753 -18773326 - L1PA4 LINE L1 -2 6153 2327 1688 194 7 0 chrY 5939760 5940049 -18773030 - AluSp SINE Alu -22 291 1 306 276 38 48 chrY 5940062 5940167 -18772912 - LTR32 LTR ERVL -353 118 15 21 36 0 0 chrY 5940783 5940811 -18772268 + AT_rich Low_complexity Low_complexity 1 28 0 1905 167 6 13 chrY 5941425 5941737 -18771342 + AluY SINE Alu 1 310 -1 1539 183 38 7 chrY 5943689 5943979 -18769100 - AluSc SINE Alu -9 300 2 6356 246 174 2 chrY 5944019 5945728 -18767351 + L1PA12 LINE L1 1 2003 -5578 1314 305 24 0 chrY 5945734 5946111 -18766968 + L1PA13 LINE L1 347 732 -6055 1290 252 119 17 chrY 5946124 5946703 -18766376 + L1PA13 LINE L1 2517 3154 -3643 1907 177 3 0 chrY 5948461 5948771 -18764308 + AluSq SINE Alu 1 311 -2 236 167 0 56 chrY 5948833 5948887 -18764192 + L1M4c LINE L1 1545 1595 -5184 247 383 4 4 chrY 5949298 5949528 -18763551 + L1M4c LINE L1 1836 2065 -4785 2914 167 34 9 chrY 5949539 5950127 -18762952 - LTR10E LTR ERV1 -31 602 1 312 65 22 0 chrY 5950137 5950183 -18762896 + L1M4c LINE L1 2480 2526 -4323 602 277 86 69 chrY 5950208 5950835 -18762244 + L1M4c LINE L1 2910 3524 -3324 1463 221 7 3 chrY 5950835 5951134 -18761945 - AluSc SINE Alu -9 300 1 602 277 86 69 chrY 5951134 5951451 -18761628 + L1M4c LINE L1 3524 5534 -1314 1141 293 21 20 chrY 5951462 5952869 -18760210 + BSR/Beta Satellite Satellite 1 1408 -8 2983 30 0 8 chrY 5952869 5953231 -18759848 - L1P LINE L1 -934 5212 4854 5196 23 2 5 chrY 5953231 5953789 -18759290 + L1PA2 LINE L1 5582 6155 0 488 145 31 5 chrY 5953817 5953904 -18759175 + MLT1A1 LTR MaLR 243 319 -46 391 259 9 19 chrY 5953918 5954026 -18759053 + BSR/Beta Satellite Satellite 46 152 0 * 585 252 14 25 chrY 5953929 5954780 -18758299 + BSR/Beta Satellite Satellite 1 841 -43 859 246 28 19 chrY 5954913 5955124 -18757955 + BSR/Beta Satellite Satellite 21 233 -146 2071 135 56 5 chrY 5955126 5956871 -18756208 + L1PA7 LINE L1 4175 6153 -1 447 257 0 0 chrY 5956871 5956995 -18756084 + BSR/Beta Satellite Satellite 1 124 -47 490 273 24 22 chrY 5957048 5957887 -18755192 + BSR/Beta Satellite Satellite 1 840 -15 463 227 37 0 chrY 5957936 5958089 -18754990 + BSR/Beta Satellite Satellite 1 158 0 1198 260 20 10 chrY 5958186 5958486 -18754593 + BSR/Beta Satellite Satellite 28 330 -49 474 286 32 20 chrY 5958555 5958931 -18754148 + BSR/Beta Satellite Satellite 1 380 -25 586 256 22 27 chrY 5958999 5959281 -18753798 + BSR/Beta Satellite Satellite 1 280 -1 398 278 16 40 chrY 5959295 5959469 -18753610 + BSR/Beta Satellite Satellite 1 169 -29 1154 277 21 24 chrY 5959495 5959831 -18753248 + BSR/Beta Satellite Satellite 29 363 -16 797 338 6 6 chrY 5959855 5960175 -18752904 + BSR/Beta Satellite Satellite 9 328 -51 329 264 28 76 chrY 5960211 5960355 -18752724 + BSR/Beta Satellite Satellite 2 138 -4 422 262 36 24 chrY 5960371 5960601 -18752478 + BSR/Beta Satellite Satellite 1 232 -53 621 287 19 10 chrY 5960651 5961420 -18751659 + BSR/Beta Satellite Satellite 1 776 0 897 296 46 7 chrY 5961527 5961811 -18751268 + BSR/Beta Satellite Satellite 36 330 -49 539 306 11 24 chrY 5961848 5962259 -18750820 + BSR/Beta Satellite Satellite 1 405 -20 496 313 5 13 chrY 5962327 5963018 -18750061 + BSR/Beta Satellite Satellite 1 685 -21 354 333 28 7 chrY 5963175 5963316 -18749763 + BSR/Beta Satellite Satellite 3 146 -6 1217 275 40 8 chrY 5963407 5964208 -18748871 + BSR/Beta Satellite Satellite 1 826 -44 1292 306 8 4 chrY 5964280 5965057 -18748022 + BSR/Beta Satellite Satellite 1 779 -1 555 277 31 18 chrY 5965141 5966206 -18746873 + BSR/Beta Satellite Satellite 1 1079 -43 1049 324 4 6 chrY 5966340 5966700 -18746379 + BSR/Beta Satellite Satellite 1 359 -54 347 319 36 19 chrY 5966773 5966965 -18746114 + BSR/Beta Satellite Satellite 1 195 0 526 251 5 18 chrY 5967207 5967358 -18745721 + BSR/Beta Satellite Satellite 1 148 -52 1013 302 26 9 chrY 5967382 5967855 -18745224 + BSR/Beta Satellite Satellite 1 481 -21 614 281 27 20 chrY 5967947 5968963 -18744116 + BSR/Beta Satellite Satellite 1 1023 0 1282 282 19 0 chrY 5969053 5969398 -18743681 + BSR/Beta Satellite Satellite 1 351 -64 407 290 15 38 chrY 5969499 5969630 -18743449 + BSR/Beta Satellite Satellite 15 142 0 247 330 34 5 chrY 5969707 5969905 -18743174 + BSR/Beta Satellite Satellite 1 203 -11 620 325 10 12 chrY 5970021 5970985 -18742094 + BSR/Beta Satellite Satellite 1 961 -7 1156 286 26 19 chrY 5971006 5971877 -18741202 + BSR/Beta Satellite Satellite 1 876 -63 924 294 44 9 chrY 5971892 5972212 -18740867 + BSR/Beta Satellite Satellite 41 371 -8 1021 308 18 2 chrY 5972225 5972760 -18740319 + BSR/Beta Satellite Satellite 1 543 -40 602 230 27 46 chrY 5972809 5973603 -18739476 + BSR/Beta Satellite Satellite 1 778 -42 1089 296 17 28 chrY 5973680 5974073 -18739006 + BSR/Beta Satellite Satellite 1 397 -1192 2810 10 0 0 chrY 5974073 5974378 -18738701 - AluY SINE Alu -6 305 1 1089 296 17 28 chrY 5974378 5975245 -18737834 + BSR/Beta Satellite Satellite 397 1548 -41 1051 299 10 20 chrY 5975273 5976048 -18737031 + BSR/Beta Satellite Satellite 1 767 -35 603 278 21 27 chrY 5976119 5976845 -18736234 + BSR/Beta Satellite Satellite 1 721 -64 284 360 20 0 chrY 5976911 5977011 -18736068 + BSR/Beta Satellite Satellite 2 103 -49 484 274 0 0 chrY 5977107 5977220 -18735859 - BSR/Beta Satellite Satellite -14 128 16 475 242 33 39 chrY 5977233 5977386 -18735693 - BSR/Beta Satellite Satellite 0 152 1 792 280 6 0 chrY 5977399 5977694 -18735385 - BSR/Beta Satellite Satellite -44 296 1 625 293 20 25 chrY 5977820 5978577 -18734502 - BSR/Beta Satellite Satellite -1 753 1 371 309 0 40 chrY 5978604 5978730 -18734349 - BSR/Beta Satellite Satellite -5 137 17 423 165 139 0 chrY 5978733 5978812 -18734267 - AluSg/x SINE Alu -12 300 211 626 298 57 22 chrY 5978948 5979264 -18733815 - BSR/Beta Satellite Satellite -27 352 26 628 272 17 27 chrY 5979365 5980627 -18732452 - BSR/Beta Satellite Satellite -1 1249 1 1189 305 7 5 chrY 5980695 5981302 -18731777 - BSR/Beta Satellite Satellite -10 608 1 198 0 0 0 chrY 5981392 5981414 -18731665 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 27865 53 13 1 chrY 5981416 5985737 -18727342 - L1PA3 LINE L1 -9 6146 1776 392 319 0 0 chrY 5985740 5985856 -18727223 - BSR/Beta Satellite Satellite -14 128 13 5382 62 1 3 chrY 5985862 5986555 -18726524 + L1P LINE L1 1246 1937 -4209 1107 286 23 15 chrY 5986562 5987638 -18725441 - BSR/Beta Satellite Satellite -3 1084 1 486 288 20 34 chrY 5987798 5988515 -18724564 - BSR/Beta Satellite Satellite -1 706 1 505 310 15 25 chrY 5988573 5988939 -18724140 - BSR/Beta Satellite Satellite -4 362 1 758 320 40 0 chrY 5988997 5989275 -18723804 - BSR/Beta Satellite Satellite -50 329 41 582 285 30 12 chrY 5989385 5990351 -18722728 - BSR/Beta Satellite Satellite -2 983 1 1100 309 9 2 chrY 5990444 5990866 -18722213 - BSR/Beta Satellite Satellite -44 424 1 1252 259 22 12 chrY 5990886 5991206 -18721873 - BSR/Beta Satellite Satellite -16 363 41 1163 280 16 33 chrY 5991282 5992979 -18720100 - BSR/Beta Satellite Satellite -1 1668 1 577 255 24 25 chrY 5993014 5993392 -18719687 - BSR/Beta Satellite Satellite 0 622 10 1398 43 0 4 chrY 5993392 5993628 -18719451 + (TTC)n Simple_repeat Simple_repeat 1 235 0 1406 234 7 0 chrY 5993640 5993944 -18719135 - AluSg SINE Alu -2 308 3 889 299 38 12 chrY 5993953 5994432 -18718647 - BSR/Beta Satellite Satellite -44 491 1 323 380 21 0 chrY 5994528 5994670 -18718409 - BSR/Beta Satellite Satellite -7 145 1 477 264 38 25 chrY 5994814 5995187 -18717892 - BSR/Beta Satellite Satellite 0 377 1 507 267 11 32 chrY 5995206 5995423 -18717656 - BSR/Beta Satellite Satellite 0 212 1 281 358 22 0 chrY 5995470 5995607 -18717472 - BSR/Beta Satellite Satellite -2 140 1 1178 288 13 18 chrY 5995679 5996305 -18716774 - BSR/Beta Satellite Satellite -57 622 1 849 295 14 34 chrY 5996460 5998057 -18715022 - BSR/Beta Satellite Satellite -7 1564 1 637 271 14 25 chrY 5998221 5998804 -18714275 - BSR/Beta Satellite Satellite -3 576 1 1250 286 16 13 chrY 5999120 5999731 -18713348 - BSR/Beta Satellite Satellite -49 612 1 1091 288 11 27 chrY 5999859 6001408 -18711671 - BSR/Beta Satellite Satellite -44 1523 1 400 247 0 0 chrY 6001422 6001511 -18711568 - BSR/Beta Satellite Satellite -13 366 278 1771 170 7 3 chrY 6001520 6001814 -18711265 + AluY SINE Alu 1 295 -16 22 35 0 0 chrY 6001817 6001846 -18711233 + AT_rich Low_complexity Low_complexity 1 29 0 556 272 17 18 chrY 6001861 6002313 -18710766 - BSR/Beta Satellite Satellite 0 451 1 352 288 76 42 chrY 6002339 6002627 -18710452 - L1 LINE L1 -1332 4814 4517 684 194 16 8 chrY 6002644 6002773 -18710306 + AluSc SINE Alu 2 131 -178 5390 62 35 0 chrY 6002806 6003466 -18709613 - MER11D LTR ERVK 0 897 215 676 71 0 0 chrY 6003462 6003546 -18709533 - MER11D LTR ERVK -813 84 1 * 792 228 12 0 chrY 6003577 6003744 -18709335 + FRAM SINE Alu 1 40 0 331 297 62 0 chrY 6003748 6003893 -18709186 - L1 LINE L1 -3312 2834 2681 * 15132 78 8 17 chrY 6003890 6005997 -18707082 - L1P LINE L1 -1441 4705 2617 2666 239 82 36 chrY 6005994 6006932 -18706147 - L1PA13 LINE L1 -4396 2401 1417 * 333 415 34 8 chrY 6006955 6007220 -18705859 - L1PA13 LINE L1 -5529 1258 987 1412 306 76 4 chrY 6007307 6007767 -18705312 - L1PA13 LINE L1 -5956 831 339 * 5328 283 12 6 chrY 6007765 6009463 -18703616 - L1PA12 LINE L1 -5577 2004 20 28 0 0 0 chrY 6009483 6009511 -18703568 + AT_rich Low_complexity Low_complexity 1 28 0 22 56 0 0 chrY 6010091 6010127 -18702952 + AT_rich Low_complexity Low_complexity 1 36 0 1293 184 5 0 chrY 6010676 6010899 -18702180 + AluSq SINE Alu 4 227 -86 21 0 0 0 chrY 6011475 6011496 -18701583 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chrY 6011683 6011709 -18701370 + AT_rich Low_complexity Low_complexity 1 26 0 3539 132 4 6 chrY 6012883 6013392 -18699687 - MER9 LTR ERVK 0 511 4 1283 202 151 4 chrY 6014298 6014556 -18698523 + AluSp SINE Alu 1 296 -7 1479 227 20 40 chrY 6014560 6014913 -18698166 + LTR32 LTR ERVL 124 469 -2 3903 185 18 9 chrY 6015615 6016468 -18696611 - MER61-int LTR ERV1 -1061 3954 2349 582 301 29 43 chrY 6016470 6016746 -18696333 - BSR/Beta Satellite Satellite -81 298 27 584 280 8 22 chrY 6016838 6017916 -18695163 - BSR/Beta Satellite Satellite -1 1063 1 563 342 40 4 chrY 6017967 6018242 -18694837 - BSR/Beta Satellite Satellite -90 289 5 905 304 22 13 chrY 6018265 6018578 -18694501 - BSR/Beta Satellite Satellite -19 360 45 707 233 26 15 chrY 6018592 6018995 -18694084 - BSR/Beta Satellite Satellite -2 407 1 914 295 56 6 chrY 6019057 6019532 -18693547 - BSR/Beta Satellite Satellite 0 498 1 327 326 30 0 chrY 6019566 6019698 -18693381 - BSR/Beta Satellite Satellite -15 137 2 608 281 18 31 chrY 6019784 6020591 -18692488 - BSR/Beta Satellite Satellite 0 796 1 1311 277 14 16 chrY 6020674 6021372 -18691707 - BSR/Beta Satellite Satellite -49 696 1 537 281 24 21 chrY 6021467 6022550 -18690529 - BSR/Beta Satellite Satellite 0 1085 1 572 309 6 6 chrY 6022606 6022916 -18690163 - BSR/Beta Satellite Satellite -44 310 1 1065 298 16 2 chrY 6022939 6023288 -18689791 - BSR/Beta Satellite Satellite -5 353 1 652 236 19 61 chrY 6023315 6023897 -18689182 - BSR/Beta Satellite Satellite 0 557 1 517 297 4 0 chrY 6023910 6024074 -18689005 - BSR/Beta Satellite Satellite -3 164 1 1048 300 6 12 chrY 6024255 6024588 -18688491 - BSR/Beta Satellite Satellite -44 335 5 1093 250 36 32 chrY 6024604 6024912 -18688167 - BSR/Beta Satellite Satellite -13 366 58 469 255 45 34 chrY 6024945 6025316 -18687763 - BSR/Beta Satellite Satellite 0 374 1 1295 270 23 16 chrY 6025344 6025901 -18687178 - BSR/Beta Satellite Satellite -44 560 1 255 304 13 13 chrY 6026029 6026108 -18686971 - BSR/Beta Satellite Satellite -41 111 33 412 274 35 16 chrY 6026280 6026671 -18686408 - BSR/Beta Satellite Satellite -1 398 1 * 533 252 12 16 chrY 6026546 6026731 -18686348 - BSR/Beta Satellite Satellite 0 184 1 1037 259 36 19 chrY 6027032 6027726 -18685353 - BSR/Beta Satellite Satellite 0 705 1 452 288 20 16 chrY 6027771 6028007 -18685072 - BSR/Beta Satellite Satellite -2 236 1 1037 299 20 4 chrY 6028084 6028825 -18684254 - BSR/Beta Satellite Satellite -1 752 1 609 279 14 23 chrY 6028868 6029273 -18683806 - BSR/Beta Satellite Satellite -5 401 1 234 0 0 0 chrY 6029303 6029329 -18683750 + (TTA)n Simple_repeat Simple_repeat 2 27 0 14605 63 7 3 chrY 6029329 6031947 -18681132 - L1PA4 LINE L1 -22 6133 3509 1120 273 52 6 chrY 6033420 6033750 -18679329 - L1MB5 LINE L1 -13 6161 5817 1189 231 151 16 chrY 6033757 6034208 -18678871 - L1MB5 LINE L1 -415 5765 5254 272 312 16 24 chrY 6034234 6034359 -18678720 + L1M3d LINE L1 772 895 -5758 331 346 27 43 chrY 6034488 6034772 -18678307 + L1M3d LINE L1 372 659 -5994 1819 159 10 3 chrY 6034772 6035067 -18678012 - AluSx SINE Alu -15 297 1 331 346 27 43 chrY 6035067 6035111 -18677968 + L1M3d LINE L1 659 1436 -5217 226 305 48 72 chrY 6035141 6035308 -18677771 + L1M3de LINE L1 283 445 -6208 1573 227 39 53 chrY 6035399 6035830 -18677249 + MSTB LTR MaLR 1 425 -1 1570 189 0 23 chrY 6036058 6036359 -18676720 - AluSg SINE Alu -16 294 1 709 354 39 25 chrY 6036449 6036856 -18676223 + L1M3de LINE L1 438 850 -5813 378 61 0 0 chrY 6037836 6037885 -18675194 + (CA)n Simple_repeat Simple_repeat 2 50 0 211 50 75 0 chrY 6037887 6037927 -18675152 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 287 283 11 22 chrY 6037937 6038029 -18675050 - MLT1E LTR MaLR -118 475 385 282 338 115 20 chrY 6038172 6038320 -18674759 + AluSc SINE Alu 135 296 -3 1019 89 17 17 chrY 6038920 6039054 -18674025 + (TTTC)n Simple_repeat Simple_repeat 1 314 0 1019 89 17 17 chrY 6039054 6039234 -18673845 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 284 159 0 0 chrY 6039276 6039320 -18673759 + T-rich Low_complexity Low_complexity 1 44 0 1247 223 45 3 chrY 6039329 6039496 -18673583 - AluSx SINE Alu -9 303 118 375 41 0 0 chrY 6039496 6039545 -18673534 + (TG)n Simple_repeat Simple_repeat 2 50 0 1247 223 45 3 chrY 6039545 6039664 -18673415 - AluSx SINE Alu -194 118 5 1367 232 3 0 chrY 6039708 6040014 -18673065 - AluSx SINE Alu -1 311 5 279 280 64 24 chrY 6040486 6040611 -18672468 - MLT1F LTR MaLR -27 515 386 22 0 0 0 chrY 6041151 6041173 -18671906 + AT_rich Low_complexity Low_complexity 1 22 0 208 259 129 35 chrY 6043311 6043396 -18669683 + MIR3 SINE MIR 87 179 -29 809 78 0 0 chrY 6045797 6045900 -18667179 - L1P3 LINE L1 -622 5532 5430 2160 103 29 7 chrY 6045900 6046208 -18666871 + L1PA6 LINE L1 5837 6153 -1 408 246 59 0 chrY 6047476 6047594 -18665485 - L1MC3 LINE L1 -1571 6214 6090 362 298 80 72 chrY 6099272 6099732 -18613347 + SST1 Satellite centromeric 138 601 -962 302 200 44 0 chrY 6100584 6100674 -18612405 + (TG)n Simple_repeat Simple_repeat 1 94 0 252 0 0 0 chrY 6100807 6100835 -18612244 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 276 30 0 0 chrY 6100909 6100942 -18612137 + (A)n Simple_repeat Simple_repeat 1 33 0 1719 236 17 12 chrY 6101380 6101786 -18611293 + LTR2 LTR ERV1 42 449 0 9778 193 29 19 chrY 6101786 6104066 -18609013 + Harlequin LTR ERV1 1 2384 -5429 * 10979 173 2 25 chrY 6104045 6105937 -18607142 + Harlequin LTR ERV1 2497 4344 -3469 3595 42 2 37 chrY 6105939 6106628 -18606451 - L1P1 LINE L1 -430 5725 5070 3879 49 0 0 chrY 6106628 6107095 -18605984 + L1PA2 LINE L1 5685 6154 -1 16214 229 7 5 chrY 6107100 6110471 -18602608 + Harlequin LTR ERV1 4350 7811 -2 1496 246 57 24 chrY 6110471 6110672 -18602407 + LTR2 LTR ERV1 1 194 -255 351 0 0 0 chrY 6110672 6110711 -18602368 + (TTCTG)n Simple_repeat Simple_repeat 2 40 0 1496 246 57 24 chrY 6110711 6110932 -18602147 + LTR2 LTR ERV1 194 437 -12 417 314 65 57 chrY 6111192 6111651 -18601428 + SST1 Satellite centromeric 132 594 -969 195 69 0 0 chrY 6112595 6112624 -18600455 + (TG)n Simple_repeat Simple_repeat 2 30 0 318 324 67 57 chrY 6113668 6114128 -18598951 + SST1 Satellite centromeric 138 602 -961 183 217 0 0 chrY 6115033 6115093 -18597986 + (TG)n Simple_repeat Simple_repeat 1 60 0 270 106 0 0 chrY 6117538 6117585 -18595494 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 281 39 0 77 chrY 6119939 6119991 -18593088 + (TG)n Simple_repeat Simple_repeat 1 48 0 296 241 12 0 chrY 6121410 6121493 -18591586 + (TG)n Simple_repeat Simple_repeat 1 84 0 24 0 0 0 chrY 6121990 6122014 -18591065 + AT_rich Low_complexity Low_complexity 1 24 0 388 303 72 55 chrY 6122554 6123009 -18590070 + SST1 Satellite centromeric 138 600 -963 600 14 0 0 chrY 6124013 6124082 -18588997 + (TTC)n Simple_repeat Simple_repeat 2 70 0 283 298 71 58 chrY 6125154 6125449 -18587630 + SST1 Satellite centromeric 207 505 -1058 216 0 0 0 chrY 6126579 6126603 -18586476 + (A)n Simple_repeat Simple_repeat 1 24 0 397 297 108 61 chrY 6127409 6127853 -18585226 + SST1 Satellite centromeric 137 601 -962 230 276 0 0 chrY 6128345 6128403 -18584676 + SST1 Satellite centromeric 1163 1220 -343 195 69 0 0 chrY 6128782 6128811 -18584268 + (TG)n Simple_repeat Simple_repeat 1 29 0 264 332 64 62 chrY 6130357 6130730 -18582349 + SST1 Satellite centromeric 1165 1538 -25 180 77 0 0 chrY 6130789 6130815 -18582264 + (TG)n Simple_repeat Simple_repeat 1 26 0 274 320 70 59 chrY 6131813 6132341 -18580738 + SST1 Satellite centromeric 62 595 -968 252 59 0 0 chrY 6133281 6133315 -18579764 + (TG)n Simple_repeat Simple_repeat 1 34 0 372 299 59 67 chrY 6134462 6134850 -18578229 + SST1 Satellite centromeric 227 611 -952 243 240 13 0 chrY 6139988 6140063 -18573016 + (TG)n Simple_repeat Simple_repeat 1 76 0 328 313 76 47 chrY 6141190 6141573 -18571506 + SST1 Satellite centromeric 207 600 -963 336 316 84 71 chrY 6142060 6142452 -18570627 + SST1 Satellite centromeric 1163 1559 -4 212 0 36 0 chrY 6142742 6142770 -18570309 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 234 250 12 12 chrY 6144442 6144526 -18568553 + (TG)n Simple_repeat Simple_repeat 1 84 0 257 339 59 51 chrY 6145668 6146043 -18567036 + SST1 Satellite centromeric 224 601 -962 303 113 0 0 chrY 6146973 6147026 -18566053 + (TG)n Simple_repeat Simple_repeat 2 54 0 295 289 0 0 chrY 6149031 6149107 -18563972 + SST1 Satellite centromeric 1163 1238 -325 249 167 0 0 chrY 6149732 6149786 -18563293 + A-rich Low_complexity Low_complexity 1 54 0 233 321 44 44 chrY 6150780 6151029 -18562050 + SST1 Satellite centromeric 352 600 -963 269 94 0 62 chrY 6151942 6152006 -18561073 + (TG)n Simple_repeat Simple_repeat 1 60 0 236 213 27 0 chrY 6154373 6154448 -18558631 + (TG)n Simple_repeat Simple_repeat 1 77 0 208 279 0 0 chrY 6156833 6156901 -18556178 + (TG)n Simple_repeat Simple_repeat 1 68 0 321 26 0 0 chrY 6156939 6156977 -18556102 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 234 0 0 0 chrY 6159611 6159637 -18553442 + (A)n Simple_repeat Simple_repeat 1 26 0 237 294 32 40 chrY 6160472 6160598 -18552481 + SST1 Satellite centromeric 138 262 -1301 264 130 0 0 chrY 6161863 6161909 -18551170 + (TG)n Simple_repeat Simple_repeat 1 46 0 264 314 72 55 chrY 6162658 6163005 -18550074 + SST1 Satellite centromeric 138 490 -1073 309 278 76 28 chrY 6163271 6163415 -18549664 + SST1 Satellite centromeric 1386 1536 -27 419 35 18 0 chrY 6163464 6163521 -18549558 + (TG)n Simple_repeat Simple_repeat 1 58 0 423 0 0 0 chrY 6163741 6163788 -18549291 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 245 264 47 62 chrY 6164247 6164440 -18548639 + SST1 Satellite centromeric 412 601 -962 240 342 13 0 chrY 6164945 6165024 -18548055 + SST1 Satellite centromeric 1148 1227 -336 198 0 0 0 chrY 6165368 6165390 -18547689 + (TG)n Simple_repeat Simple_repeat 1 22 0 216 0 0 0 chrY 6165612 6165636 -18547443 + (A)n Simple_repeat Simple_repeat 1 24 0 264 313 81 63 chrY 6166487 6166944 -18546135 + SST1 Satellite centromeric 138 602 -961 279 295 0 0 chrY 6167435 6167513 -18545566 + SST1 Satellite centromeric 1162 1239 -324 234 178 41 14 chrY 6167812 6167885 -18545194 + (TG)n Simple_repeat Simple_repeat 2 76 0 198 0 0 0 chrY 6168096 6168118 -18544961 + (A)n Simple_repeat Simple_repeat 1 22 0 180 167 0 0 chrY 6168764 6168812 -18544267 + (TG)n Simple_repeat Simple_repeat 1 48 0 241 313 30 30 chrY 6169864 6169995 -18543084 + SST1 Satellite centromeric 132 262 -1301 216 259 12 12 chrY 6171197 6171282 -18541797 + (TG)n Simple_repeat Simple_repeat 2 86 0 561 326 57 42 chrY 6172241 6172806 -18540273 + SST1 Satellite centromeric 29 601 -962 185 153 0 17 chrY 6173705 6173764 -18539315 + (TG)n Simple_repeat Simple_repeat 2 59 0 2346 65 3 0 chrY 6176938 6177245 -18535834 - AluY SINE Alu -3 308 1 21 0 0 0 chrY 6177474 6177495 -18535584 + AT_rich Low_complexity Low_complexity 1 21 0 415 297 62 56 chrY 6177596 6177916 -18535163 + SST1 Satellite centromeric 314 635 -928 724 12 105 0 chrY 6178580 6178742 -18534337 + (TA)n Simple_repeat Simple_repeat 2 180 0 309 247 41 55 chrY 6178753 6178899 -18534180 + L1MCa LINE L1 1948 2091 -4335 * 333 219 65 116 chrY 6178783 6179075 -18534004 - L1MC5 LINE L1 -209 7752 7476 489 319 46 40 chrY 6180390 6180763 -18532316 + SST1 Satellite centromeric 227 601 -962 257 235 24 0 chrY 6184096 6184181 -18528898 + (TG)n Simple_repeat Simple_repeat 2 88 0 195 152 0 0 chrY 6186595 6186641 -18526438 + (TG)n Simple_repeat Simple_repeat 1 46 0 212 241 0 0 chrY 6188948 6189002 -18524077 + (TG)n Simple_repeat Simple_repeat 1 54 0 224 137 20 0 chrY 6190640 6190691 -18522388 + (TG)n Simple_repeat Simple_repeat 1 52 0 234 265 42 54 chrY 6191691 6191857 -18521222 + SST1 Satellite centromeric 111 274 -1289 248 271 21 0 chrY 6193053 6193149 -18519930 + (TG)n Simple_repeat Simple_repeat 1 98 0 451 342 50 25 chrY 6194091 6194650 -18518429 + SST1 Satellite centromeric 29 601 -962 279 130 0 0 chrY 6195545 6195599 -18517480 + (TG)n Simple_repeat Simple_repeat 1 54 0 226 230 0 14 chrY 6196343 6196417 -18516662 + (TG)n Simple_repeat Simple_repeat 1 73 0 189 107 0 0 chrY 6196458 6196486 -18516593 + (T)n Simple_repeat Simple_repeat 1 28 0 476 294 61 56 chrY 6197482 6197944 -18515135 + SST1 Satellite centromeric 138 601 -962 237 238 24 0 chrY 6198856 6198940 -18514139 + (TG)n Simple_repeat Simple_repeat 1 86 0 1148 84 4 14 chrY 6198978 6199267 -18513812 + (TTC)n Simple_repeat Simple_repeat 1 285 0 180 0 0 0 chrY 6199339 6199359 -18513720 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 412 287 65 67 chrY 6200363 6200750 -18512329 + SST1 Satellite centromeric 227 612 -951 354 74 0 0 chrY 6201648 6201702 -18511377 + (TG)n Simple_repeat Simple_repeat 1 54 0 233 303 37 46 chrY 6203693 6203802 -18509277 + SST1 Satellite centromeric 1132 1239 -324 211 265 20 0 chrY 6203997 6204095 -18508984 + (TG)n Simple_repeat Simple_repeat 1 100 0 314 309 65 52 chrY 6205255 6205624 -18507455 + SST1 Satellite centromeric 227 600 -963 201 154 0 0 chrY 6206124 6206163 -18506916 + (TG)n Simple_repeat Simple_repeat 2 40 0 248 309 48 39 chrY 6207459 6207689 -18505390 + SST1 Satellite centromeric 370 601 -962 22 0 0 0 chrY 6208839 6208861 -18504218 + AT_rich Low_complexity Low_complexity 1 22 0 381 315 55 39 chrY 6209708 6210165 -18502914 + SST1 Satellite centromeric 138 601 -962 184 75 25 25 chrY 6211074 6211114 -18501965 + (TG)n Simple_repeat Simple_repeat 1 40 0 1702 244 13 33 chrY 6211723 6212181 -18500898 + LTR2 LTR ERV1 1 449 0 6954 193 47 13 chrY 6212181 6213854 -18499225 + Harlequin LTR ERV1 1 1806 -6007 * 20908 221 6 9 chrY 6213853 6217992 -18495087 + HERVE LTR ERV1 3681 7808 -5 1745 230 36 25 chrY 6217995 6218439 -18494640 + LTR2 LTR ERV1 1 449 0 270 303 68 64 chrY 6219122 6219373 -18493706 + SST1 Satellite centromeric 349 600 -963 240 268 24 0 chrY 6220217 6220299 -18492780 + (TG)n Simple_repeat Simple_repeat 1 84 0 249 108 0 0 chrY 6220495 6220532 -18492547 + (A)n Simple_repeat Simple_repeat 1 37 0 287 24 0 24 chrY 6220557 6220598 -18492481 + (CA)n Simple_repeat Simple_repeat 1 40 0 198 103 0 0 chrY 6221699 6221728 -18491351 + (TTTTC)n Simple_repeat Simple_repeat 1 29 0 1679 159 0 17 chrY 6222660 6223023 -18490056 - AluY SINE Alu 0 358 1 238 254 58 72 chrY 6223107 6223245 -18489834 + SST1 Satellite centromeric 131 266 -1297 248 224 0 0 chrY 6224482 6224540 -18488539 + (TG)n Simple_repeat Simple_repeat 1 58 0 280 312 78 73 chrY 6225384 6225781 -18487298 + SST1 Satellite centromeric 1132 1530 -33 390 279 64 54 chrY 6226977 6227368 -18485711 + SST1 Satellite centromeric 207 601 -962 237 98 0 0 chrY 6228266 6228307 -18484772 + (TG)n Simple_repeat Simple_repeat 1 41 0 264 290 77 82 chrY 6229376 6229842 -18483237 + SST1 Satellite centromeric 138 601 -962 226 340 78 7 chrY 6230564 6230705 -18482374 + SST1 Satellite centromeric 1386 1536 -27 303 49 0 0 chrY 6230780 6230821 -18482258 + (TG)n Simple_repeat Simple_repeat 2 42 0 273 57 0 0 chrY 6232578 6232613 -18480466 + (TG)n Simple_repeat Simple_repeat 2 36 0 180 77 0 0 chrY 6232662 6232688 -18480391 + (T)n Simple_repeat Simple_repeat 1 26 0 279 0 0 0 chrY 6232888 6232919 -18480160 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 216 86 0 0 chrY 6235097 6235132 -18477947 + (TG)n Simple_repeat Simple_repeat 2 36 0 250 312 96 25 chrY 6237357 6237514 -18475565 + SST1 Satellite centromeric 1373 1540 -23 273 145 0 0 chrY 6237547 6237609 -18475470 + (TG)n Simple_repeat Simple_repeat 1 62 0 22 0 0 0 chrY 6237662 6237684 -18475395 + AT_rich Low_complexity Low_complexity 1 22 0 207 0 0 0 chrY 6237808 6237831 -18475248 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 269 337 55 41 chrY 6238638 6239127 -18473952 + SST1 Satellite centromeric 105 600 -963 202 71 24 24 chrY 6240019 6240061 -18473018 + (TG)n Simple_repeat Simple_repeat 1 42 0 231 265 41 68 chrY 6241106 6241253 -18471826 + SST1 Satellite centromeric 132 274 -1289 278 247 21 0 chrY 6241975 6242072 -18471007 + (CA)n Simple_repeat Simple_repeat 2 100 0 252 0 0 0 chrY 6244064 6244092 -18468987 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 284 306 35 40 chrY 6245221 6245394 -18467685 - SST1 Satellite centromeric -962 601 430 207 0 0 0 chrY 6246497 6246520 -18466559 + (T)n Simple_repeat Simple_repeat 1 23 0 220 186 0 0 chrY 6246722 6246765 -18466314 + (CA)n Simple_repeat Simple_repeat 2 44 0 328 323 52 39 chrY 6246834 6247240 -18465839 - SST1 Satellite centromeric -962 601 191 198 0 0 0 chrY 6248121 6248143 -18464936 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 209 196 0 0 chrY 6248368 6248414 -18464665 + (CA)n Simple_repeat Simple_repeat 1 46 0 180 97 0 0 chrY 6250836 6250867 -18462212 + (CA)n Simple_repeat Simple_repeat 2 32 0 307 277 89 75 chrY 6251793 6252085 -18460994 - SST1 Satellite centromeric -1039 524 229 270 0 0 0 chrY 6253010 6253040 -18460039 + (TTTTTG)n Simple_repeat Simple_repeat 1 30 0 280 253 10 10 chrY 6253236 6253335 -18459744 + (CA)n Simple_repeat Simple_repeat 1 99 0 1700 152 0 3 chrY 6253439 6253771 -18459308 - AluY SINE Alu 0 331 1 1205 7 0 0 chrY 6253778 6253913 -18459166 - AluYa5 SINE Alu -13 298 164 291 242 0 0 chrY 6254129 6254191 -18458888 - SST1 Satellite centromeric -339 1224 1163 225 250 24 0 chrY 6256211 6256295 -18456784 + (CA)n Simple_repeat Simple_repeat 1 86 0 244 276 109 63 chrY 6256854 6257028 -18456051 - SST1 Satellite centromeric -226 1337 1156 241 333 56 52 chrY 6257518 6257770 -18455309 - SST1 Satellite centromeric -962 601 349 203 83 0 83 chrY 6259059 6259107 -18453972 + (CA)n Simple_repeat Simple_repeat 1 44 0 207 152 0 0 chrY 6260403 6260449 -18452630 + (CA)n Simple_repeat Simple_repeat 1 46 0 189 0 0 0 chrY 6261210 6261231 -18451848 + (T)n Simple_repeat Simple_repeat 1 21 0 182 104 0 83 chrY 6261441 6261489 -18451590 + (CA)n Simple_repeat Simple_repeat 1 44 0 265 311 9 9 chrY 6261568 6261674 -18451405 - SST1 Satellite centromeric -71 1492 1387 411 311 52 59 chrY 6262247 6262536 -18450543 - SST1 Satellite centromeric -963 600 314 241 250 26 0 chrY 6263757 6263833 -18449246 + (CA)n Simple_repeat Simple_repeat 2 79 0 300 161 0 0 chrY 6265870 6265951 -18447128 + T-rich Low_complexity Low_complexity 1 81 0 208 279 0 0 chrY 6266145 6266206 -18446873 + (CA)n Simple_repeat Simple_repeat 2 62 0 275 329 77 64 chrY 6266230 6266622 -18446457 - SST1 Satellite centromeric -11 1552 1156 240 328 42 72 chrY 6267110 6267375 -18445704 - SST1 Satellite centromeric -963 600 344 194 0 39 0 chrY 6268433 6268459 -18444620 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 286 321 59 63 chrY 6269593 6269880 -18443199 - SST1 Satellite centromeric -962 601 316 223 48 24 24 chrY 6270893 6270935 -18442144 + (TTG)n Simple_repeat Simple_repeat 2 43 0 189 0 0 0 chrY 6271191 6271212 -18441867 + (CA)n Simple_repeat Simple_repeat 1 21 0 394 323 51 36 chrY 6272116 6272506 -18440573 - SST1 Satellite centromeric -961 602 207 252 0 0 0 chrY 6273420 6273448 -18439631 + (T)n Simple_repeat Simple_repeat 1 28 0 226 316 0 25 chrY 6274037 6274116 -18438963 - SST1 Satellite centromeric -325 1238 1162 257 0 30 0 chrY 6275566 6275599 -18437480 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 203 47 70 47 chrY 6275892 6275935 -18437144 + T-rich Low_complexity Low_complexity 2 45 0 201 94 0 0 chrY 6276105 6276137 -18436942 + (CA)n Simple_repeat Simple_repeat 1 32 0 229 255 0 0 chrY 6276415 6276462 -18436617 - SST1 Satellite centromeric -354 1209 1163 281 280 92 74 chrY 6276935 6277392 -18435687 - SST1 Satellite centromeric -962 601 137 683 254 12 48 chrY 6277888 6278220 -18434859 + LTR2 LTR ERV1 1 420 -29 231 36 0 0 chrY 6278220 6278248 -18434831 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 2003 230 5 0 chrY 6278270 6278652 -18434427 + Harlequin LTR ERV1 1 384 -6512 452 137 8 18 chrY 6278739 6278866 -18434213 + Harlequin LTR ERV1 525 683 -6213 6029 195 40 7 chrY 6279307 6281824 -18431255 + Harlequin LTR ERV1 658 3376 -4437 6710 200 16 6 chrY 6281825 6283405 -18429674 + Harlequin LTR ERV1 4375 6005 -1808 388 350 0 0 chrY 6283407 6283530 -18429549 + Harlequin LTR ERV1 6383 6505 -1308 721 214 0 0 chrY 6283558 6283689 -18429390 + Harlequin LTR ERV1 6765 6895 -1 708 264 3 36 chrY 6283689 6284050 -18429029 + LTR2 LTR ERV1 1 449 0 227 342 0 0 chrY 6285000 6285079 -18428000 - SST1 Satellite centromeric -322 1241 1163 294 308 80 47 chrY 6285616 6285892 -18427187 - SST1 Satellite centromeric -1072 491 207 245 42 0 83 chrY 6287018 6287066 -18426013 + (CA)n Simple_repeat Simple_repeat 1 44 0 265 294 68 20 chrY 6287111 6287257 -18425822 - SST1 Satellite centromeric -25 1538 1386 206 197 45 0 chrY 6289395 6289461 -18423618 + (CA)n Simple_repeat Simple_repeat 1 69 0 227 341 12 12 chrY 6289796 6289881 -18423198 - SST1 Satellite centromeric -344 1219 1135 227 324 77 50 chrY 6290339 6290821 -18422258 - SST1 Satellite centromeric -962 601 107 204 135 0 0 chrY 6291846 6291883 -18421196 + (CA)n Simple_repeat Simple_repeat 2 38 0 286 320 10 10 chrY 6292240 6292337 -18420742 - SST1 Satellite centromeric -335 1228 1132 315 299 23 40 chrY 6293119 6293293 -18419786 - SST1 Satellite centromeric -1289 274 104 216 143 0 0 chrY 6295182 6295224 -18417855 + (CA)n Simple_repeat Simple_repeat 1 42 0 252 246 0 46 chrY 6295601 6295666 -18417413 - SST1 Satellite centromeric -346 1217 1156 280 321 59 56 chrY 6296153 6296440 -18416639 - SST1 Satellite centromeric -962 601 314 249 33 0 0 chrY 6297456 6297486 -18415593 + (T)n Simple_repeat Simple_repeat 1 30 0 287 270 125 40 chrY 6297806 6297958 -18415121 - SST1 Satellite centromeric -25 1538 1374 458 315 61 52 chrY 6298679 6299139 -18413940 - SST1 Satellite centromeric -962 601 138 301 318 66 42 chrY 6300546 6300832 -18412247 - SST1 Satellite centromeric -1081 482 190 328 315 61 51 chrY 6302798 6303189 -18409890 - SST1 Satellite centromeric -962 601 207 195 129 0 0 chrY 6304053 6304084 -18408995 + (T)n Simple_repeat Simple_repeat 1 31 0 264 91 0 0 chrY 6304341 6304385 -18408694 + (CA)n Simple_repeat Simple_repeat 1 44 0 375 323 49 36 chrY 6307894 6308284 -18404795 - SST1 Satellite centromeric -962 601 207 192 111 0 0 chrY 6309412 6309448 -18403631 + (CA)n Simple_repeat Simple_repeat 1 36 0 230 305 62 51 chrY 6311645 6311822 -18401257 - SST1 Satellite centromeric -1165 398 220 192 40 0 0 chrY 6312745 6312770 -18400309 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 216 253 13 0 chrY 6312970 6313045 -18400034 + (CA)n Simple_repeat Simple_repeat 1 76 0 276 247 21 0 chrY 6314002 6314099 -18398980 + (CA)n Simple_repeat Simple_repeat 2 100 0 273 29 0 0 chrY 6316460 6316494 -18396585 + (CA)n Simple_repeat Simple_repeat 1 34 0 228 275 33 33 chrY 6316854 6316945 -18396134 - SST1 Satellite centromeric -325 1238 1148 291 28 0 0 chrY 6318347 6318383 -18394696 + (TG)n Simple_repeat Simple_repeat 1 36 0 246 32 0 0 chrY 6319663 6319694 -18393385 + (CA)n Simple_repeat Simple_repeat 2 32 0 236 268 42 0 chrY 6320803 6320874 -18392205 - SST1 Satellite centromeric -334 1229 1156 207 0 0 0 chrY 6322142 6322165 -18390914 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 237 236 22 11 chrY 6323490 6323579 -18389500 + (CA)n Simple_repeat Simple_repeat 1 90 0 349 287 65 53 chrY 6324442 6324689 -18388390 - SST1 Satellite centromeric -962 601 352 215 24 0 98 chrY 6325887 6325928 -18387151 + (CA)n Simple_repeat Simple_repeat 1 37 0 471 277 80 72 chrY 6326843 6327233 -18385846 - SST1 Satellite centromeric -962 601 209 249 108 0 0 chrY 6328836 6328873 -18384206 + (T)n Simple_repeat Simple_repeat 1 37 0 268 202 24 12 chrY 6329398 6329482 -18383597 + (CA)n Simple_repeat Simple_repeat 2 86 0 242 309 0 0 chrY 6329793 6329861 -18383218 - SST1 Satellite centromeric -334 1229 1162 227 160 40 40 chrY 6330655 6330705 -18382374 - SST1 Satellite centromeric -1285 278 229 420 20 0 0 chrY 6331841 6331890 -18381189 + (CA)n Simple_repeat Simple_repeat 2 50 0 259 280 78 102 chrY 6331993 6332325 -18380754 - SST1 Satellite centromeric -77 1486 1163 258 293 68 78 chrY 6332823 6333222 -18379857 - SST1 Satellite centromeric -962 601 207 227 338 0 0 chrY 6334736 6334804 -18378275 - SST1 Satellite centromeric -334 1229 1162 248 349 39 35 chrY 6335272 6335527 -18377552 - SST1 Satellite centromeric -964 599 344 225 200 17 0 chrY 6336457 6336517 -18376562 + (CA)n Simple_repeat Simple_repeat 2 62 0 271 348 50 35 chrY 6337441 6337904 -18375175 - SST1 Satellite centromeric -962 601 132 211 270 22 0 chrY 6338850 6338939 -18374140 + (CA)n Simple_repeat Simple_repeat 2 92 0 353 322 61 47 chrY 6339894 6340319 -18372760 - SST1 Satellite centromeric -1039 524 94 2543 151 42 150 chrY 6341203 6341965 -18371114 - LTR1 LTR ERV1 -104 681 2 334 172 0 0 chrY 6341974 6342032 -18371047 - L1MC4 LINE L1 -1375 6667 6610 25 31 0 0 chrY 6343180 6343212 -18369867 + AT_rich Low_complexity Low_complexity 1 32 0 377 264 11 0 chrY 6343215 6343302 -18369777 - FRAM SINE Alu -10 156 69 23 0 0 0 chrY 6343335 6343358 -18369721 + AT_rich Low_complexity Low_complexity 1 23 0 319 313 17 9 chrY 6343358 6343473 -18369606 - FLAM_C SINE Alu -7 126 11 261 0 0 0 chrY 6345636 6345665 -18367414 + (TA)n Simple_repeat Simple_repeat 2 30 0 280 274 103 17 chrY 6346499 6346616 -18366463 + MLT1F LTR MaLR 389 515 -27 1124 217 34 24 chrY 6346785 6347080 -18365999 + AluSx SINE Alu 1 298 -4 1264 203 0 48 chrY 6347135 6347430 -18365649 + AluSx SINE Alu 12 292 -20 969 120 11 11 chrY 6347448 6347623 -18365456 + (GAAA)n Simple_repeat Simple_repeat 4 178 0 270 125 0 0 chrY 6347624 6347672 -18365407 + (GGAA)n Simple_repeat Simple_repeat 1 48 0 347 259 14 119 chrY 6348286 6348429 -18364650 - FLAM_C SINE Alu -5 128 1 287 273 11 23 chrY 6348569 6348657 -18364422 + MLT1E LTR MaLR 385 471 -122 197 119 24 0 chrY 6348661 6348703 -18364376 + (TG)n Simple_repeat Simple_repeat 2 44 0 595 369 44 20 chrY 6349669 6350127 -18362952 - L1M3b LINE L1 -5771 510 42 265 281 143 71 chrY 6350156 6350201 -18362878 - L1M3de LINE L1 -5750 903 863 1510 197 0 14 chrY 6350201 6350480 -18362599 + AluSc SINE Alu 14 288 -21 265 281 143 71 chrY 6350480 6350672 -18362407 - L1M3de LINE L1 -5790 863 649 1335 244 35 45 chrY 6350683 6351109 -18361970 - MSTB LTR MaLR -4 422 1 1762 174 13 3 chrY 6351441 6351745 -18361334 + AluSx SINE Alu 1 307 -5 358 344 23 20 chrY 6351785 6352028 -18361051 - L1M3de LINE L1 -5217 1436 604 22 35 0 0 chrY 6352272 6352301 -18360778 + AT_rich Low_complexity Low_complexity 1 29 0 253 220 0 0 chrY 6352301 6352360 -18360719 - L1MA4 LINE L1 -10 6290 6232 488 238 36 42 chrY 6352406 6352539 -18360540 + L1MA4 LINE L1 6039 6172 -128 1089 240 52 14 chrY 6352539 6352827 -18360252 + AluJo SINE Alu 2 300 -2 488 238 36 42 chrY 6352827 6352861 -18360218 + L1MA4 LINE L1 6172 6205 -95 1495 193 3 21 chrY 6352892 6353182 -18359897 - AluSx SINE Alu -25 287 3 1134 211 41 15 chrY 6353380 6353646 -18359433 + AluSg SINE Alu 15 287 -23 1600 189 3 0 chrY 6355186 6355488 -18357591 + L1MB1 LINE L1 5865 6167 -1 23 0 0 0 chrY 6355809 6355832 -18357247 + AT_rich Low_complexity Low_complexity 1 23 0 387 60 0 0 chrY 6355898 6355948 -18357131 + (TAA)n Simple_repeat Simple_repeat 2 51 0 21 0 0 0 chrY 6356084 6356105 -18356974 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chrY 6356232 6356254 -18356825 + AT_rich Low_complexity Low_complexity 1 22 0 1611 155 35 21 chrY 6356300 6356577 -18356502 + AluSg SINE Alu 1 284 -26 196 42 0 0 chrY 6356577 6356601 -18356478 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 4778 210 30 15 chrY 6357612 6359522 -18353557 + L1PA16 LINE L1 3990 5924 -242 451 263 0 8 chrY 6359522 6359640 -18353439 + L1P LINE L1 4845 4961 -1185 270 207 0 0 chrY 6359637 6359695 -18353384 - L1PA16 LINE L1 -169 5997 5940 * 1018 195 10 5 chrY 6359710 6359905 -18353174 + L1PA16 LINE L1 5935 6130 -36 26 0 0 0 chrY 6359969 6359995 -18353084 + AT_rich Low_complexity Low_complexity 1 26 0 522 341 110 60 chrY 6360586 6360889 -18352190 - L2 LINE L2 -35 3237 2951 1996 134 0 17 chrY 6360889 6361187 -18351892 + AluSc SINE Alu 1 293 -16 522 341 110 60 chrY 6361187 6361576 -18351503 - L2 LINE L2 -321 2951 2517 890 61 0 0 chrY 6362211 6362325 -18350754 + L1PA4 LINE L1 6038 6151 -4 1472 153 42 0 chrY 6363103 6363339 -18349740 - AluSq SINE Alu -27 286 41 2846 264 41 94 chrY 6363537 6364187 -18348892 - L2 LINE L2 -214 3099 2474 866 0 0 0 chrY 6364187 6364283 -18348796 - AluYa5/8 SINE Alu -5 306 211 2846 264 41 94 chrY 6364283 6364967 -18348112 - L2 LINE L2 -839 2474 1755 1003 333 85 43 chrY 6365013 6365754 -18347325 - L2 LINE L2 -2325 989 218 4779 186 25 12 chrY 6365853 6366852 -18346227 - L1PA16 LINE L1 -11 6155 5144 2904 107 23 7 chrY 6366852 6367293 -18345786 + LTR7 LTR ERV1 1 448 -2 4779 186 25 12 chrY 6367293 6367533 -18345546 - L1PA16 LINE L1 -1022 5144 4909 750 265 33 23 chrY 6367628 6367843 -18345236 + MER58A DNA MER1_type 2 218 -6 217 326 11 34 chrY 6367912 6368001 -18345078 - MER5B DNA MER1_type -67 111 25 1973 196 61 25 chrY 6368522 6368965 -18344114 + LTR2B LTR ERV1 32 490 0 39800 216 10 8 chrY 6368965 6376765 -18336314 + HERVE LTR ERV1 1 7812 -1 1762 227 61 20 chrY 6376784 6377225 -18335854 + LTR2B LTR ERV1 32 490 0 202 273 18 0 chrY 6378092 6378147 -18334932 - MIR SINE MIR -66 142 87 545 345 72 5 chrY 6379244 6379453 -18333626 + MIR SINE MIR 36 258 -4 193 318 0 0 chrY 6379543 6379587 -18333492 + L2 LINE L2 3210 3253 -19 502 352 28 28 chrY 6380110 6380397 -18332682 - L3 LINE CR1 -78 1499 1213 1349 240 17 40 chrY 6380588 6380938 -18332141 - MLT1A1 LTR MaLR 0 365 24 2601 222 63 9 chrY 6381659 6382232 -18330847 - MER90 LTR ERV1 -10 604 1 409 280 93 90 chrY 6382258 6382526 -18330553 - L2 LINE L2 -65 3248 2980 247 270 112 66 chrY 6383585 6383737 -18329342 - MIR SINE MIR -56 206 48 287 304 114 43 chrY 6383799 6383983 -18329096 + MIR SINE MIR 66 262 0 313 325 25 8 chrY 6384011 6384131 -18328948 + MIR SINE MIR 124 245 -17 21 57 0 0 chrY 6386006 6386041 -18327038 + AT_rich Low_complexity Low_complexity 1 35 0 273 320 271 36 chrY 6387349 6387652 -18325427 - L2 LINE L2 -2 3311 2938 2749 23 0 0 chrY 6387672 6387982 -18325097 - AluYa5 SINE Alu -1 310 1 394 225 66 60 chrY 6389026 6389177 -18323902 + MIR SINE MIR 101 252 -10 1133 142 0 6 chrY 6389380 6389556 -18323523 - THE1C LTR MaLR -2 373 199 1808 158 59 31 chrY 6389563 6389917 -18323162 - THE1B LTR MaLR 0 364 1 4449 118 3 0 chrY 6389921 6390538 -18322541 - THE1B-int LTR MaLR -4 1576 958 3181 122 2 0 chrY 6390536 6391012 -18322067 - THE1B-int LTR MaLR -1088 492 16 * 1833 178 48 22 chrY 6391028 6391383 -18321696 - THE1B LTR MaLR 0 364 1 1071 192 21 0 chrY 6391384 6391577 -18321502 - THE1C LTR MaLR -178 197 1 953 214 136 16 chrY 6391656 6391899 -18321180 + AluSx SINE Alu 1 272 -40 281 259 35 26 chrY 6392073 6392189 -18320890 - L1MC5 LINE L1 -528 7433 7317 451 215 9 19 chrY 6392232 6392339 -18320740 - LTR16B LTR ERVL 0 464 359 268 366 37 101 chrY 6392515 6392870 -18320209 + L2 LINE L2 2936 3267 -5 345 283 151 19 chrY 6392970 6393129 -18319950 + MIR SINE MIR 12 191 -71 2019 150 0 3 chrY 6393277 6393570 -18319509 + AluSg SINE Alu 1 292 -18 1163 306 63 42 chrY 6393613 6394417 -18318662 - L2 LINE L2 -19 3294 2466 195 42 0 0 chrY 6394421 6394445 -18318634 + (TAA)n Simple_repeat Simple_repeat 3 26 0 487 302 63 40 chrY 6394458 6394680 -18318399 - MIR SINE MIR -23 239 13 236 289 0 0 chrY 6394816 6394868 -18318211 + LTR30 LTR ERV1 1 52 -670 1199 146 54 65 chrY 6394868 6395131 -18317948 + LTR12 LTR ERV1 53 258 -456 320 283 10 0 chrY 6395132 6395231 -18317848 + LTR30 LTR ERV1 525 624 -98 712 173 3 71 chrY 6395231 6395372 -18317707 + LTR12 LTR ERV1 300 483 -231 * 5773 138 1 7 chrY 6395366 6396258 -18316821 + HERV9 LTR ERV1 2086 2972 -5427 1045 155 92 5 chrY 6396257 6396464 -18316615 + HERV9 LTR ERV1 4756 4980 -3419 * 2282 176 90 88 chrY 6396431 6397330 -18315749 + HERV9 LTR ERV1 840 1740 -5156 269 105 0 0 chrY 6397328 6397366 -18315713 + HERV9 LTR ERV1 7626 7663 -736 * 1410 190 4 0 chrY 6397361 6397614 -18315465 + HERV9 LTR ERV1 7796 8049 -350 255 339 52 17 chrY 6398241 6398356 -18314723 + MIR SINE MIR 56 174 -88 407 309 54 36 chrY 6398567 6398726 -18314353 + MIR3 SINE MIR 35 199 -9 716 296 14 9 chrY 6398726 6398949 -18314130 - MER58A DNA MER1_type 0 224 1 189 0 0 0 chrY 6400274 6400295 -18312784 + (T)n Simple_repeat Simple_repeat 1 21 0 245 29 29 0 chrY 6400473 6400507 -18312572 + (CA)n Simple_repeat Simple_repeat 2 36 0 721 224 8 100 chrY 6400546 6400787 -18312292 + MER20 DNA MER1_type 1 219 0 1988 129 6 3 chrY 6401478 6401789 -18311290 - AluSp SINE Alu -1 312 1 381 271 84 67 chrY 6402052 6402443 -18310636 - L1MC/D LINE L1 -2048 5760 5363 421 298 88 19 chrY 6402496 6402701 -18310378 - L1MC/D LINE L1 -801 5345 5127 1916 140 39 0 chrY 6403162 6403447 -18309632 - AluSx SINE Alu -14 298 3 279 309 50 69 chrY 6403714 6404093 -18308986 - L1MC/D LINE L1 -2200 3946 3575 279 0 0 0 chrY 6404139 6404170 -18308909 + (GA)n Simple_repeat Simple_repeat 2 32 0 1431 176 44 37 chrY 6404244 6404516 -18308563 + THE1B LTR MaLR 1 274 -90 527 238 7 7 chrY 6404550 6404693 -18308386 + L1MB7 LINE L1 6033 6175 -9 358 336 43 43 chrY 6404740 6405020 -18308059 - L2 LINE L2 -809 2505 2226 300 53 0 0 chrY 6405832 6405870 -18307209 + (TG)n Simple_repeat Simple_repeat 2 39 0 319 320 41 46 chrY 6406682 6406876 -18306203 + MIR SINE MIR 60 252 -10 193 111 0 0 chrY 6407660 6407687 -18305392 - MIR SINE MIR -155 107 81 243 88 0 0 chrY 6407701 6407735 -18305344 + (TG)n Simple_repeat Simple_repeat 1 34 0 5869 118 20 3 chrY 6409331 6410780 -18302299 + L1PA11 LINE L1 4697 6169 -5 225 186 0 23 chrY 6410878 6410921 -18302158 + L2 LINE L2 3268 3309 -4 202 302 57 17 chrY 6410922 6411030 -18302049 - MIR SINE MIR -65 143 37 482 302 48 40 chrY 6411277 6411525 -18301554 - MIR SINE MIR -2 260 11 22 0 0 0 chrY 6412210 6412232 -18300847 + AT_rich Low_complexity Low_complexity 1 22 0 1131 233 77 52 chrY 6412360 6412479 -18300600 - MLT1A2 LTR MaLR 0 374 259 1927 154 0 10 chrY 6412479 6412784 -18300295 + AluSx SINE Alu 1 302 -10 1131 233 77 52 chrY 6412784 6413029 -18300050 - MLT1A2 LTR MaLR -115 259 1 266 303 13 0 chrY 6413444 6413520 -18299559 - MER81 DNA DNA -2 112 36 248 175 0 0 chrY 6415239 6415302 -18297777 + L1MA3 LINE L1 6243 6305 0 183 42 0 0 chrY 6415591 6415615 -18297464 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1482 153 3 93 chrY 6415635 6415936 -18297143 - AluSc SINE Alu -35 274 1 589 159 7 43 chrY 6416362 6416500 -18296579 + L1MA7 LINE L1 6158 6290 -1 756 151 0 0 chrY 6417336 6417506 -18295573 - AluSg/x SINE Alu 0 336 167 1454 156 34 1 chrY 6417507 6417745 -18295334 - LTR12 LTR ERV1 0 2425 478 325 247 31 0 chrY 6417752 6417849 -18295230 - LTR30 LTR ERV1 -99 623 524 1274 134 0 144 chrY 6417849 6418126 -18294953 - LTR12 LTR ERV1 -456 258 22 235 214 89 0 chrY 6418126 6418182 -18294897 - AluSq SINE Alu -109 194 134 644 215 15 0 chrY 6418182 6418312 -18294767 - AluJo/FLAM SINE Alu -169 133 2 909 155 7 7 chrY 6419585 6419765 -18293314 - AluSc SINE Alu 0 310 131 671 172 86 17 chrY 6419854 6420028 -18293051 - MER53 DNA DNA -1 188 3 573 320 34 7 chrY 6420138 6420510 -18292569 - L1ME LINE L1 -595 5571 5194 296 298 67 58 chrY 6420698 6420899 -18292180 - L1ME LINE L1 -3415 2731 2533 1995 125 0 67 chrY 6420899 6421227 -18291852 + AluSx SINE Alu 1 306 -6 296 298 67 58 chrY 6421227 6421521 -18291558 - L1ME LINE L1 -3613 2533 2232 207 139 0 0 chrY 6421585 6421621 -18291458 + (TA)n Simple_repeat Simple_repeat 2 37 0 305 318 23 0 chrY 6421624 6421712 -18291367 - L1MC4 LINE L1 -1340 6702 6613 305 318 23 0 chrY 6421712 6421800 -18291279 - L1MC4 LINE L1 -1340 6702 6613 319 311 0 0 chrY 6421813 6421903 -18291176 - L1MC4 LINE L1 -1339 6703 6614 313 233 0 68 chrY 6421820 6421923 -18291156 + L1MC4 LINE L1 6610 6705 -1337 * 480 245 0 0 chrY 6421923 6422066 -18291013 + (TA)n Simple_repeat Simple_repeat 1 143 0 2691 26 0 10 chrY 6422066 6422379 -18290700 - AluYa5 SINE Alu -1 310 1 468 192 30 1 chrY 6422381 6422496 -18290583 - L1MA6 LINE L1 0 6300 6174 24 67 0 0 chrY 6422657 6422702 -18290377 + AT_rich Low_complexity Low_complexity 1 45 0 41 21 0 0 chrY 6422830 6422878 -18290201 + AT_rich Low_complexity Low_complexity 1 48 0 333 309 21 0 chrY 6423094 6423188 -18289891 - MIR SINE MIR -126 136 41 342 0 0 0 chrY 6423223 6423261 -18289818 + (CA)n Simple_repeat Simple_repeat 1 38 0 240 35 0 0 chrY 6423311 6423340 -18289739 + (CA)n Simple_repeat Simple_repeat 2 30 0 386 308 17 8 chrY 6424066 6424186 -18288893 + L2 LINE L2 3189 3309 -4 181 297 16 31 chrY 6425121 6425185 -18287894 + MIR SINE MIR 83 145 -63 1815 171 0 0 chrY 6425507 6425812 -18287267 + AluSx SINE Alu 1 305 0 534 172 104 8 chrY 6426066 6426200 -18286879 + MER96B DNA MER1_type? 88 234 -183 317 359 70 30 chrY 6426417 6426788 -18286291 - L1M4 LINE L1 -3631 2515 2130 364 257 0 38 chrY 6426960 6427065 -18286014 + L1M4 LINE L1 4915 5015 -1131 567 145 84 0 chrY 6427065 6427196 -18285883 + L1MB7 LINE L1 6043 6184 0 1671 226 56 8 chrY 6428309 6428392 -18284687 + LTR2 LTR ERV1 41 119 -330 321 26 0 0 chrY 6428392 6428430 -18284649 + (TAA)n Simple_repeat Simple_repeat 2 39 0 1671 226 56 8 chrY 6428430 6428736 -18284343 + LTR2 LTR ERV1 119 449 0 16359 99 3 5 chrY 6428736 6430999 -18282080 + HERVE LTR ERV1 1 2259 -5554 3242 89 8 43 chrY 6430997 6431481 -18281598 + HERVE LTR ERV1 3061 3527 -4286 * 2087 192 30 82 chrY 6431481 6432076 -18281003 - LTR6A LTR ERV1 0 564 1 244 111 0 74 chrY 6432083 6432137 -18280942 - LTR6B LTR ERV1 -508 50 1 31935 90 3 8 chrY 6432137 6436446 -18276633 + HERVE LTR ERV1 3524 7812 -1 1693 201 67 15 chrY 6436535 6436618 -18276461 + LTR2 LTR ERV1 41 118 -331 369 0 0 0 chrY 6436618 6436659 -18276420 + (TAA)n Simple_repeat Simple_repeat 2 42 0 1693 201 67 15 chrY 6436659 6436964 -18276115 + LTR2 LTR ERV1 118 449 0 12322 68 2 16 chrY 6437024 6439470 -18273609 - L1PA5 LINE L1 -4 6150 3721 474 65 0 0 chrY 6440202 6440264 -18272815 + (ATG)n Simple_repeat Simple_repeat 2 63 0 326 307 102 0 chrY 6440302 6440429 -18272650 - MIR SINE MIR -42 220 81 201 176 0 0 chrY 6442759 6442793 -18270286 + A-rich Low_complexity Low_complexity 1 34 0 1019 268 69 7 chrY 6442955 6443261 -18269818 - MER58B DNA MER1_type -2 339 15 295 373 71 6 chrY 6443470 6443639 -18269440 + MIR SINE MIR 13 192 -70 2021 130 27 0 chrY 6444182 6444481 -18268598 + AluSx SINE Alu 4 310 -2 21 36 0 0 chrY 6444618 6444646 -18268433 + AT_rich Low_complexity Low_complexity 1 28 0 324 0 0 0 chrY 6445160 6445196 -18267883 + (GA)n Simple_repeat Simple_repeat 1 36 0 496 206 24 8 chrY 6445563 6445689 -18267390 + L1MA4 LINE L1 5545 5672 -628 1127 226 0 5 chrY 6445689 6445906 -18267173 + AluJb SINE Alu 65 280 -32 3000 168 11 27 chrY 6445909 6446348 -18266731 + L1MA4 LINE L1 5672 6100 -200 1620 199 3 3 chrY 6446348 6446640 -18266439 + AluJb SINE Alu 1 292 -20 3000 168 11 27 chrY 6446640 6446824 -18266255 + L1MA4 LINE L1 6100 6285 -15 825 304 156 2 chrY 6447371 6447953 -18265126 - L1M4 LINE L1 -3037 3109 2438 368 246 59 36 chrY 6447974 6448194 -18264885 - L1M4 LINE L1 -3784 2362 2138 360 191 0 0 chrY 6448323 6448386 -18264693 - Tigger5 DNA MER2_type -3 2320 2258 215 106 30 76 chrY 6448387 6448453 -18264626 + (TA)n Simple_repeat Simple_repeat 2 64 0 301 229 14 0 chrY 6448502 6448572 -18264507 + L1MCa LINE L1 1994 2064 -4362 25 0 0 0 chrY 6448682 6448707 -18264372 + AT_rich Low_complexity Low_complexity 1 25 0 302 143 0 0 chrY 6449241 6449283 -18263796 - LTR33 LTR ERVL -2 519 478 * 781 339 85 6 chrY 6449282 6449624 -18263455 - LTR33 LTR ERVL -152 369 1 373 289 75 54 chrY 6449822 6450102 -18262977 - L1MC5 LINE L1 -37 7924 7639 485 276 40 9 chrY 6450192 6450458 -18262621 - L1MC5 LINE L1 -413 7395 7262 549 289 49 26 chrY 6450516 6450820 -18262259 - L1MC5 LINE L1 -744 7217 6907 327 333 62 23 chrY 6451918 6452047 -18261032 - MIR3 SINE MIR -43 165 32 182 296 19 0 chrY 6452121 6452175 -18260904 - MIR3 SINE MIR -3 205 151 205 340 28 66 chrY 6452217 6452323 -18260756 - MER5B DNA MER1_type -72 106 5 273 86 52 0 chrY 6453269 6453327 -18259752 + GA-rich Low_complexity Low_complexity 2 62 0 301 361 31 47 chrY 6453656 6453847 -18259232 + MIR SINE MIR 19 206 -56 357 299 48 42 chrY 6454412 6454579 -18258500 + L1ME LINE L1 5326 5493 -628 23 0 0 0 chrY 6455053 6455076 -18258003 + AT_rich Low_complexity Low_complexity 1 23 0 256 319 39 69 chrY 6455575 6455779 -18257300 + MIR SINE MIR 20 217 -45 381 403 0 0 chrY 6456179 6456298 -18256781 + L2 LINE L2 3133 3251 -21 32 0 0 0 chrY 6456326 6456358 -18256721 + AT_rich Low_complexity Low_complexity 1 32 0 204 292 0 0 chrY 6456397 6456445 -18256634 + L2 LINE L2 3248 3295 -18 2555 59 0 0 chrY 6457978 6458284 -18254795 - AluY SINE Alu -5 306 1 7336 105 6 20 chrY 6458729 6459801 -18253278 + MER11C LTR ERVK 1 1057 -14 21 36 0 0 chrY 6463046 6463074 -18250005 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chrY 6463376 6463397 -18249682 + AT_rich Low_complexity Low_complexity 1 21 0 1205 229 14 10 chrY 6463416 6463704 -18249375 + AluJo SINE Alu 13 301 -11 1854 172 7 0 chrY 6463704 6464000 -18249079 + AluSx SINE Alu 1 298 -14 1430 172 0 101 chrY 6465764 6466076 -18247003 + AluSx SINE Alu 1 280 -32 315 0 0 0 chrY 6466076 6466111 -18246968 + (CA)n Simple_repeat Simple_repeat 2 36 0 1430 172 0 101 chrY 6466111 6466124 -18246955 + AluSx SINE Alu 280 293 -19 183 305 67 29 chrY 6469618 6469723 -18243356 + L2 LINE L2 390 498 -2816 510 253 0 0 chrY 6470470 6470569 -18242510 + AluJ/FLAM SINE Alu 3 101 -211 343 120 0 0 chrY 6470589 6470639 -18242440 - MER1B DNA MER1_type -13 316 267 351 107 0 107 chrY 6470808 6470883 -18242196 - MER1B DNA MER1_type -62 277 211 327 134 82 104 chrY 6470978 6471075 -18242004 + L1MA7 LINE L1 6132 6227 -64 937 183 183 38 chrY 6471075 6471338 -18241741 + AluJo SINE Alu 2 302 0 327 134 82 104 chrY 6471338 6471374 -18241705 + L1MA7 LINE L1 6227 6262 -29 239 71 24 0 chrY 6471665 6471707 -18241372 + (TTATG)n Simple_repeat Simple_repeat 2 44 0 2121 81 0 7 chrY 6471842 6472149 -18240930 - AluY SINE Alu 0 305 1 333 47 0 0 chrY 6472172 6472215 -18240864 + (TG)n Simple_repeat Simple_repeat 2 44 0 1759 171 3 7 chrY 6474003 6474313 -18238766 - AluSc SINE Alu 0 309 1 1601 182 0 7 chrY 6476300 6476580 -18236499 + AluSg SINE Alu 5 282 -28 1090 261 38 21 chrY 6478006 6478293 -18234786 - AluJo SINE Alu -10 292 1 28 0 0 0 chrY 6478401 6478429 -18234650 + AT_rich Low_complexity Low_complexity 1 28 0 1767 254 170 15 chrY 6479742 6480542 -18232537 - L1MB4 LINE L1 0 6180 5257 1406 201 31 3 chrY 6482462 6482750 -18230329 - AluSg SINE Alu -14 296 1 193 127 0 48 chrY 6482928 6482991 -18230088 + (TTTTTA)n Simple_repeat Simple_repeat 2 61 0 6586 73 17 8 chrY 6482992 6484414 -18228665 - SVA Other Other -875 1384 29 1411 219 3 14 chrY 6484719 6485007 -18228072 + AluSx SINE Alu 3 287 -25 983 249 55 18 chrY 6485073 6485241 -18227838 - AluJo SINE Alu -13 299 116 258 56 0 0 chrY 6485241 6485277 -18227802 + (TG)n Simple_repeat Simple_repeat 1 36 0 983 249 55 18 chrY 6485277 6485381 -18227698 - AluJo SINE Alu -196 116 17 514 250 48 12 chrY 6485389 6485557 -18227522 - L1MA4 LINE L1 -124 6176 6003 335 162 59 0 chrY 6485560 6485628 -18227451 + L1MA4 LINE L1 6218 6289 -11 276 301 30 38 chrY 6485654 6485787 -18227292 + L1M3d LINE L1 764 895 -5758 360 341 31 63 chrY 6485901 6486185 -18226894 + L1M3d LINE L1 371 662 -5991 2086 140 0 7 chrY 6486185 6486492 -18226587 - AluSx SINE Alu -7 305 1 360 341 31 63 chrY 6486492 6486549 -18226530 + L1M3d LINE L1 662 1436 -5217 1669 212 49 49 chrY 6486830 6487259 -18225820 + MSTB1 LTR MaLR 4 432 0 279 294 9 28 chrY 6487266 6487375 -18225704 + L1M3de LINE L1 649 755 -5898 1613 173 0 44 chrY 6487473 6487802 -18225277 - AluSg SINE Alu 0 316 1 744 338 49 36 chrY 6487886 6488336 -18224743 + L1M3b LINE L1 55 510 -5771 232 204 20 0 chrY 6489182 6489231 -18223848 - L1MC/D LINE L1 -1999 5809 5760 587 211 7 112 chrY 6489499 6489651 -18223428 + FLAM_C SINE Alu 2 137 -6 761 160 6 17 chrY 6490278 6490459 -18222620 + CT-rich Low_complexity Low_complexity 2 180 0 1458 228 0 27 chrY 6490495 6490793 -18222286 - AluSx SINE Alu -8 294 5 1345 226 13 0 chrY 6490838 6491144 -18221935 - AluSx SINE Alu -2 310 1 368 280 58 77 chrY 6491616 6492059 -18221020 - MLT1F LTR MaLR -27 515 102 839 99 0 0 chrY 6497028 6497139 -18215940 - L1P3 LINE L1 -614 5540 5430 2358 104 0 0 chrY 6497139 6497455 -18215624 + L1PA6 LINE L1 5837 6154 0 683 143 7 20 chrY 6498749 6498896 -18214183 + GA-rich Low_complexity Low_complexity 3 147 0 22 35 0 0 chrY 6499406 6499435 -18213644 + AT_rich Low_complexity Low_complexity 1 29 0 720 221 89 13 chrY 6501141 6501254 -18211825 + AluJo SINE Alu 11 141 -171 186 43 0 0 chrY 6501254 6501277 -18211802 + (TTAA)n Simple_repeat Simple_repeat 2 24 0 720 221 89 13 chrY 6501277 6501321 -18211758 + AluJo SINE Alu 141 180 -132 240 174 0 22 chrY 6501359 6501405 -18211674 + Alu SINE Alu 86 130 -172 185 178 67 0 chrY 6501928 6501973 -18211106 + L2 LINE L2 3262 3309 -4 228 299 207 18 chrY 6502366 6502530 -18210549 + LTR33A LTR ERVL 131 325 -198 21 0 0 0 chrY 6502570 6502591 -18210488 + AT_rich Low_complexity Low_complexity 1 21 0 560 198 0 24 chrY 6502591 6502717 -18210362 + LTR1 LTR ERV1 1 123 -662 2421 172 36 62 chrY 6502718 6503327 -18209752 + LTR1 LTR ERV1 89 681 -104 6171 160 112 109 chrY 6503669 6505359 -18207720 + pTR5 LTR ERV1 743 2436 -2 655 170 18 0 chrY 6505393 6505505 -18207574 - MER41E LTR ERV1 -393 119 6 3791 179 51 17 chrY 6507613 6508395 -18204684 - L1PA16 LINE L1 -1 6165 5357 37001 87 3 2 chrY 6508551 6514687 -18198392 - L1PA5 LINE L1 -4 6150 12 22 0 0 0 chrY 6517017 6517039 -18196040 + AT_rich Low_complexity Low_complexity 1 22 0 394 316 73 10 chrY 6517169 6517375 -18195704 - L1ME LINE L1 -653 5511 5293 21 0 0 0 chrY 6517462 6517483 -18195596 + AT_rich Low_complexity Low_complexity 1 21 0 206 315 27 27 chrY 6517761 6517834 -18195245 + MER5A DNA MER1_type 43 115 -74 766 133 9 0 chrY 6519235 6519348 -18193731 - AluSc SINE Alu -193 116 3 24 0 0 0 chrY 6519348 6519372 -18193707 + AT_rich Low_complexity Low_complexity 1 24 0 1590 163 29 0 chrY 6519738 6520061 -18193018 + AluSq SINE Alu 1 331 0 26 0 0 0 chrY 6520220 6520246 -18192833 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chrY 6520727 6520749 -18192330 + AT_rich Low_complexity Low_complexity 1 22 0 327 214 0 22 chrY 6520909 6520998 -18192081 - L1MA9 LINE L1 -147 6165 6079 17557 46 1 28 chrY 6521535 6523851 -18189228 + L1PA4 LINE L1 3159 5449 -706 2183 97 0 31 chrY 6523851 6524171 -18188908 + AluY SINE Alu 1 310 -1 17557 46 1 28 chrY 6524171 6524857 -18188222 + L1PA4 LINE L1 5449 6152 -3 252 86 0 0 chrY 6525636 6525671 -18187408 + (GGAA)n Simple_repeat Simple_repeat 4 38 0 1992 122 17 7 chrY 6528450 6528823 -18184256 - AluY SINE Alu 0 385 10 1451 202 40 11 chrY 6529463 6529740 -18183339 + AluSx SINE Alu 3 287 -25 23 0 0 0 chrY 6529740 6529763 -18183316 + AT_rich Low_complexity Low_complexity 1 23 0 29 21 0 21 chrY 6530124 6530144 -18182935 + AT_rich Low_complexity Low_complexity 1 20 -26 189 0 0 0 chrY 6530144 6530165 -18182914 + (TTATA)n Simple_repeat Simple_repeat 5 25 0 29 21 0 21 chrY 6530165 6530191 -18182888 + AT_rich Low_complexity Low_complexity 20 46 0 405 218 0 0 chrY 6531668 6531792 -18181287 + GA-rich Low_complexity Low_complexity 1 124 0 610 156 11 22 chrY 6532571 6532821 -18180258 + CT-rich Low_complexity Low_complexity 1 247 0 1320 233 0 29 chrY 6532834 6533143 -18179936 - AluSx SINE Alu -8 304 5 356 0 23 0 chrY 6533189 6533233 -18179846 + (TTTTA)n Simple_repeat Simple_repeat 2 46 0 1290 232 11 0 chrY 6533235 6533519 -18179560 - AluSx SINE Alu -25 287 1 234 174 22 0 chrY 6533630 6533676 -18179403 + (CA)n Simple_repeat Simple_repeat 2 48 0 301 254 66 25 chrY 6533998 6534120 -18178959 - MLT1F LTR MaLR -27 515 389 1889 127 55 0 chrY 6537863 6538155 -18174924 - AluY SINE Alu -3 308 1 667 107 0 0 chrY 6539681 6539784 -18173295 - L1P3 LINE L1 -622 5532 5430 2134 115 0 0 chrY 6539784 6540094 -18172985 + L1PA6 LINE L1 5836 6148 -6 216 67 0 0 chrY 6540407 6540437 -18172642 + (A)n Simple_repeat Simple_repeat 1 30 0 1937 131 30 10 chrY 6541000 6541298 -18171781 - AluY SINE Alu -7 304 1 26 30 0 0 chrY 6541935 6541968 -18171111 + AT_rich Low_complexity Low_complexity 1 33 0 21 36 0 0 chrY 6542218 6542246 -18170833 + AT_rich Low_complexity Low_complexity 1 28 0 223 147 44 0 chrY 6543624 6543692 -18169387 + (TAGA)n Simple_repeat Simple_repeat 4 74 0 447 240 62 10 chrY 6543976 6544089 -18168990 + AluJo SINE Alu 11 117 -195 186 43 0 0 chrY 6544089 6544112 -18168967 + (TTAA)n Simple_repeat Simple_repeat 1 23 0 447 240 62 10 chrY 6544112 6544232 -18168847 + AluJo SINE Alu 117 289 -23 181 182 68 0 chrY 6544771 6544815 -18168264 + L2 LINE L2 3263 3309 -4 23 0 0 0 chrY 6545404 6545427 -18167652 + AT_rich Low_complexity Low_complexity 1 23 0 1677 87 138 255 chrY 6545475 6546107 -18166972 + LTR12 LTR ERV1 1 558 -156 5918 138 21 1 chrY 6546121 6547092 -18165987 + HERV9 LTR ERV1 2 991 -7408 25398 119 5 8 chrY 6547099 6551245 -18161834 + HERV9 LTR ERV1 1164 5418 -2981 17412 102 8 14 chrY 6551220 6553913 -18159166 + HERV9 LTR ERV1 5724 8399 0 * 1301 150 74 28 chrY 6553913 6554286 -18158793 + LTR12 LTR ERV1 1 2028 -410 275 277 11 0 chrY 6554287 6554381 -18158698 + LTR30 LTR ERV1 548 642 -80 1335 138 45 0 chrY 6554383 6554607 -18158472 + LTR12 LTR ERV1 481 714 0 2095 179 52 107 chrY 6554608 6555282 -18157797 + LTR1 LTR ERV1 45 681 -104 227 301 46 57 chrY 6556209 6556491 -18156588 + SST1 Satellite centromeric 132 410 -1153 266 271 0 0 chrY 6557155 6557225 -18155854 + SST1 Satellite centromeric 1148 1217 -346 6182 186 5 6 chrY 6557306 6558468 -18154611 + HERVE LTR ERV1 4376 5536 -2277 255 309 44 40 chrY 6559003 6559252 -18153827 + SST1 Satellite centromeric 352 601 -962 252 323 84 12 chrY 6559949 6560116 -18152963 + SST1 Satellite centromeric 1374 1552 -11 224 328 0 0 chrY 6560547 6560611 -18152468 + GA-rich Low_complexity Low_complexity 6 69 0 9075 131 18 6 chrY 6561567 6562952 -18150127 + HERVK14C LTR ERVK 376 1777 -5640 4455 130 12 5 chrY 6562929 6563599 -18149480 + HERVK14C LTR ERVK 1880 2554 -4863 * 15495 102 5 3 chrY 6563580 6565705 -18147374 + HERVK14C LTR ERVK 5289 7417 0 4216 109 3 0 chrY 6565705 6566290 -18146789 + LTR14C LTR ERVK 1 587 0 325 306 56 59 chrY 6568577 6568901 -18144178 + SST1 Satellite centromeric 207 529 -1034 262 289 92 28 chrY 6569685 6569827 -18143252 + SST1 Satellite centromeric 1386 1536 -27 214 254 28 0 chrY 6569832 6569903 -18143176 + (TG)n Simple_repeat Simple_repeat 2 74 0 250 279 0 0 chrY 6571913 6571974 -18141105 + SST1 Satellite centromeric 1157 1217 -346 189 132 0 0 chrY 6572341 6572379 -18140700 + (TG)n Simple_repeat Simple_repeat 1 38 0 274 336 35 38 chrY 6573613 6573902 -18139177 + SST1 Satellite centromeric 314 601 -962 271 341 68 51 chrY 6574363 6574777 -18138302 + SST1 Satellite centromeric 1132 1552 -11 22 0 0 0 chrY 6575360 6575382 -18137697 + AT_rich Low_complexity Low_complexity 1 22 0 2024 36 4 8 chrY 6576163 6576412 -18136667 + L1PA2 LINE L1 5907 6154 -1 278 293 37 52 chrY 6576451 6576642 -18136437 + SST1 Satellite centromeric 414 601 -962 4344 105 108 2 chrY 6576829 6577469 -18135610 - LTR12 LTR ERV1 -6 708 1 227 225 0 0 chrY 6577799 6577839 -18135240 + SST1 Satellite centromeric 1162 1201 -362 303 71 0 0 chrY 6578330 6578372 -18134707 + (TTTA)n Simple_repeat Simple_repeat 4 45 0 243 125 0 0 chrY 6578595 6578635 -18134444 + (CA)n Simple_repeat Simple_repeat 1 40 0 259 301 98 26 chrY 6578673 6578826 -18134253 - SST1 Satellite centromeric -26 1537 1374 286 291 78 76 chrY 6579530 6579991 -18133088 - SST1 Satellite centromeric -962 601 140 195 114 0 0 chrY 6581066 6581101 -18131978 + (CA)n Simple_repeat Simple_repeat 2 36 0 236 348 0 0 chrY 6581458 6581550 -18131529 - SST1 Satellite centromeric -324 1239 1148 442 330 55 39 chrY 6582030 6582594 -18130485 - SST1 Satellite centromeric -962 601 29 286 85 34 0 chrY 6583319 6583378 -18129701 + T-rich Low_complexity Low_complexity 97 157 0 277 326 59 39 chrY 6584540 6584927 -18128152 - SST1 Satellite centromeric -962 601 207 225 0 0 0 chrY 6585839 6585864 -18127215 + (T)n Simple_repeat Simple_repeat 1 25 0 246 95 0 0 chrY 6586062 6586104 -18126975 + (CA)n Simple_repeat Simple_repeat 1 42 0 213 121 0 0 chrY 6588450 6588483 -18124596 + (GAA)n Simple_repeat Simple_repeat 2 34 0 249 250 0 0 chrY 6588521 6588593 -18124486 + (CA)n Simple_repeat Simple_repeat 1 72 0 294 315 68 14 chrY 6588626 6588772 -18124307 - SST1 Satellite centromeric -25 1538 1385 337 296 88 33 chrY 6589512 6589752 -18123327 - SST1 Satellite centromeric -962 601 349 204 143 0 0 chrY 6591018 6591060 -18122019 + (CA)n Simple_repeat Simple_repeat 1 42 0 371 296 92 50 chrY 6591940 6592298 -18120781 - SST1 Satellite centromeric -962 601 229 214 247 14 0 chrY 6593465 6593538 -18119541 + (CA)n Simple_repeat Simple_repeat 1 74 0 229 288 86 91 chrY 6593540 6593925 -18119154 - SST1 Satellite centromeric -25 1538 1156 345 237 36 57 chrY 6594420 6594614 -18118465 - SST1 Satellite centromeric -962 601 412 1711 104 0 0 chrY 6594639 6594860 -18118219 - AluY SINE Alu -90 221 1 943 184 70 0 chrY 6595064 6595292 -18117787 - MER33 DNA MER1_type -54 270 27 229 309 129 17 chrY 6595311 6595489 -18117590 - L1ME4a LINE L1 -40 6081 5884 462 120 80 0 chrY 6598367 6598570 -18114509 + (TA)n Simple_repeat Simple_repeat 1 219 0 614 107 72 4 chrY 6598654 6598934 -18114145 + (TA)n Simple_repeat Simple_repeat 1 299 0 647 224 0 0 chrY 6599213 6599329 -18113750 - FLAM_A SINE Alu -17 116 1 1959 146 3 0 chrY 6599449 6599744 -18113335 - AluSq SINE Alu -5 308 13 275 70 0 23 chrY 6600125 6600168 -18112911 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 191 195 49 0 chrY 6600936 6600977 -18112102 + L2 LINE L2 3227 3269 -3 1442 187 10 49 chrY 6603959 6604135 -18108944 - AluSx SINE Alu -19 293 133 1484 214 7 0 chrY 6604135 6604434 -18108645 - AluSx SINE Alu -11 301 1 1442 187 10 49 chrY 6604434 6604562 -18108517 - AluSx SINE Alu -179 133 1 23 54 0 0 chrY 6604571 6604608 -18108471 + AT_rich Low_complexity Low_complexity 1 37 0 1515 144 128 4 chrY 6604869 6605126 -18107953 - AluSg SINE Alu -9 291 3 333 0 0 0 chrY 6605128 6605137 -18107942 + (TG)n Simple_repeat Simple_repeat 1 46 0 333 0 0 0 chrY 6605137 6605174 -18107905 + (TG)n Simple_repeat Simple_repeat 2 38 0 1371 156 0 36 chrY 6605507 6605732 -18107347 - AluSx SINE Alu -95 217 1 1003 244 69 18 chrY 6606356 6606968 -18106111 - L1ME4a LINE L1 -748 5398 4924 239 287 63 21 chrY 6607024 6607167 -18105912 + TAR1 Satellite telomeric 309 457 -1654 228 338 110 0 chrY 6607244 6607389 -18105690 + TAR1 Satellite telomeric 1765 1925 -186 4499 131 135 0 chrY 6608498 6609226 -18103853 + LTR12 LTR ERV1 1 826 0 7699 140 15 15 chrY 6609250 6610596 -18102483 + HERV9 LTR ERV1 58 1317 -7082 1320 164 4 17 chrY 6810599 6810830 -17902249 + AluSg/x SINE Alu 66 293 -19 4437 311 38 15 chrY 6810830 6812880 -17900199 - MER52-int LTR ERV1 -44 8875 6743 7945 282 31 16 chrY 6812903 6815202 -17897877 - MER52-int LTR ERV1 -668 6423 4122 1603 283 29 11 chrY 6815209 6815658 -17897421 - MER52-int LTR ERV1 -3419 3672 3216 * 1936 287 36 33 chrY 6815656 6816857 -17896222 + HUERS-P3b LTR ERV1 1650 2791 -4270 4714 34 0 0 chrY 6816857 6817425 -17895654 - L1P LINE L1 -1733 4413 3846 7780 18 1 0 chrY 6817425 6818586 -17894493 + L1PA2 LINE L1 4994 6155 0 1177 331 24 27 chrY 6818588 6819002 -17894077 + HUERS-P3b LTR ERV1 2778 3190 -5729 1533 272 32 24 chrY 6819002 6819371 -17893708 + LTR25 LTR ERV1 1 376 -418 234 0 0 0 chrY 6819371 6819397 -17893682 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1533 272 32 24 chrY 6819397 6819491 -17893588 + LTR25 LTR ERV1 376 468 -326 733 199 175 0 chrY 6819531 6819702 -17893377 + LTR25 LTR ERV1 408 608 -186 3693 215 33 27 chrY 6819709 6819810 -17893269 + HUERS-P3b LTR ERV1 1256 1355 -5850 1465 177 32 0 chrY 6819810 6820058 -17893021 + AluSx SINE Alu 30 285 -27 255 31 0 0 chrY 6820058 6820090 -17892989 + (CA)n Simple_repeat Simple_repeat 2 33 0 3693 215 33 27 chrY 6820090 6820323 -17892756 + HUERS-P3b LTR ERV1 1355 1585 -5620 1517 158 115 0 chrY 6820323 6820583 -17892496 + AluSg1 SINE Alu 2 291 -18 3693 215 33 27 chrY 6820583 6821299 -17891780 + HUERS-P3b LTR ERV1 1585 4649 -2556 555 121 0 0 chrY 6821308 6821391 -17891688 + AluSc SINE Alu 1 83 -226 * 697 160 40 0 chrY 6821385 6821510 -17891569 + Alu SINE Alu 176 305 -6 4445 229 57 54 chrY 6821521 6822538 -17890541 + HUERS-P3b LTR ERV1 4391 5403 -1593 2016 133 0 41 chrY 6822538 6822855 -17890224 + AluSq SINE Alu 1 304 -9 4445 229 57 54 chrY 6822855 6823892 -17889187 + HUERS-P3b LTR ERV1 5403 6996 0 2345 253 5 93 chrY 6823892 6824691 -17888388 + LTR25 LTR ERV1 1 729 -65 192 97 0 0 chrY 6824695 6824726 -17888353 + (TG)n Simple_repeat Simple_repeat 2 32 0 261 232 0 14 chrY 6824730 6824799 -17888280 - L1MC4 LINE L1 -1339 6703 6636 846 249 27 22 chrY 6824928 6825153 -17887926 - LTR25-int LTR ERV1 -6228 2691 2466 1641 294 47 55 chrY 6825209 6825936 -17887143 - LTR25-int LTR ERV1 -6440 2479 1759 2740 228 17 47 chrY 6826016 6826661 -17886418 - LTR25-int LTR ERV1 0 6996 6333 1398 167 130 4 chrY 6826661 6826930 -17886149 + AluSp SINE Alu 1 303 0 2740 228 17 47 chrY 6826930 6827279 -17885800 - LTR25-int LTR ERV1 -663 6333 3314 2513 264 88 51 chrY 6827298 6827426 -17885653 - LTR25-int LTR ERV1 -1355 5736 5614 1838 146 0 34 chrY 6827426 6827720 -17885359 - AluSc SINE Alu -25 284 1 2513 264 88 51 chrY 6827720 6828511 -17884568 - LTR25-int LTR ERV1 -1477 5614 4783 3298 126 10 6 chrY 6828511 6829020 -17884059 - MER9 LTR ERVK 0 511 1 15615 94 7 29 chrY 6829022 6831275 -17881804 - HERVK9 LTR ERVK -3 5913 3711 20927 86 2 2 chrY 6831275 6834063 -17879016 - HERVK9 LTR ERVK -3130 2786 1 3216 152 0 2 chrY 6834063 6834575 -17878504 - MER9 LTR ERVK 0 511 1 6772 287 21 50 chrY 6834575 6836746 -17876333 - LTR25-int LTR ERV1 -2303 4788 2682 2636 226 26 94 chrY 6836751 6837603 -17875476 + LTR25 LTR ERV1 1 794 0 3093 258 48 42 chrY 6837704 6838347 -17874732 + HUERS-P3 LTR ERV1 252 905 -6091 1742 173 6 13 chrY 6838347 6838660 -17874419 - AluSq SINE Alu -2 311 1 3093 258 48 42 chrY 6838660 6839124 -17873955 + HUERS-P3 LTR ERV1 905 1365 -5631 3556 271 72 47 chrY 6839181 6839461 -17873618 + HUERS-P3 LTR ERV1 1480 1751 -5500 1255 208 93 11 chrY 6839461 6839721 -17873358 + AluSx SINE Alu 1 285 -27 204 111 0 0 chrY 6839721 6839757 -17873322 + (CATATA)n Simple_repeat Simple_repeat 4 39 0 3556 271 72 47 chrY 6839765 6840302 -17872777 + HUERS-P3 LTR ERV1 1751 2273 -4978 189 0 0 0 chrY 6840302 6840323 -17872756 + (CTG)n Simple_repeat Simple_repeat 1 21 0 3556 271 72 47 chrY 6840323 6841122 -17871957 + HUERS-P3 LTR ERV1 2273 3034 -4217 7748 264 38 40 chrY 6841166 6842722 -17870357 - LTR25-int LTR ERV1 -4336 2660 1112 1827 183 3 0 chrY 6842722 6843022 -17870057 + AluSg SINE Alu 1 301 -9 7748 264 38 40 chrY 6843022 6844130 -17868949 - LTR25-int LTR ERV1 -5884 1112 3 826 282 106 12 chrY 6844152 6844492 -17868587 - LTR25 LTR ERV1 -2 792 421 1652 309 22 2 chrY 6844611 6845157 -17867922 + HUERS-P3 LTR ERV1 2512 3045 -4300 1407 242 48 0 chrY 6845184 6845540 -17867539 - LTR25 LTR ERV1 0 794 422 290 185 0 0 chrY 6845541 6845595 -17867484 - LTR25 LTR ERV1 -260 534 481 * 1495 257 68 55 chrY 6845587 6846262 -17866817 - LTR25 LTR ERV1 -51 743 32 255 241 149 0 chrY 6846337 6846424 -17866655 - Tigger4(Zombi) DNA MER2_type -2631 100 1 603 280 147 0 chrY 6846552 6846763 -17866316 + MER21B LTR ERV1 1 242 -621 3504 279 128 85 chrY 6846765 6848264 -17864815 + MER52A LTR ERV1 4 1567 -188 601 225 8 0 chrY 6848281 6848401 -17864678 + MER21B LTR ERV1 236 356 -507 4290 265 106 24 chrY 6851276 6853291 -17859788 - L1M4c LINE L1 -4179 2205 25 22 0 0 0 chrY 6853447 6853469 -17859610 + AT_rich Low_complexity Low_complexity 1 22 0 25 51 0 0 chrY 6853499 6853538 -17859541 + AT_rich Low_complexity Low_complexity 1 39 0 929 296 139 14 chrY 6853759 6854644 -17858435 - L1M4c LINE L1 -4662 1984 989 310 333 39 26 chrY 6854748 6854901 -17858178 - L1M4c LINE L1 -5773 769 615 391 339 60 39 chrY 6855703 6855958 -17857121 - L2 LINE L2 -280 3033 2763 270 245 0 0 chrY 6855992 6856045 -17857034 + MER20 DNA MER1_type 93 145 -74 180 77 0 0 chrY 6857324 6857350 -17855729 + (TTA)n Simple_repeat Simple_repeat 2 27 0 180 179 0 0 chrY 6857836 6857875 -17855204 + (TA)n Simple_repeat Simple_repeat 1 39 0 1847 164 59 16 chrY 6857903 6858276 -17854803 - MLT2A1 LTR ERVL -44 400 12 16355 140 10 12 chrY 6858283 6858613 -17854466 - HERVL-A1-A1 LTR ERVL -1 5653 5324 2689 16 0 7 chrY 6858613 6858917 -17854162 + AluY SINE Alu 1 302 -9 16355 140 10 12 chrY 6858917 6862269 -17850810 - HERVL-A1-A1 LTR ERVL -330 5324 1998 11443 147 11 9 chrY 6862274 6864110 -17848969 - HERVL-A1-A1 LTR ERVL -3814 1840 1 2198 147 62 14 chrY 6864112 6864534 -17848545 - MLT2A1 LTR ERVL -2 442 1 325 271 27 0 chrY 6864534 6864632 -17848447 + MER52A LTR ERV1 626 729 -549 51 65 0 0 chrY 6864660 6864753 -17848326 + AT_rich Low_complexity Low_complexity 1 93 0 551 258 61 42 chrY 6864756 6864969 -17848110 + MER52A LTR ERV1 825 1041 -714 * 3509 263 37 23 chrY 6864962 6865941 -17847138 + MER52A LTR ERV1 858 1755 0 213 132 0 0 chrY 6866026 6866064 -17847015 + (TAGA)n Simple_repeat Simple_repeat 4 41 0 261 57 0 0 chrY 6866064 6866099 -17846980 + (TG)n Simple_repeat Simple_repeat 2 36 0 1623 203 0 0 chrY 6866099 6866375 -17846704 - AluSg SINE Alu -34 276 1 3656 199 23 23 chrY 6867038 6867816 -17845263 + L1PA10 LINE L1 5388 6165 -3 854 213 0 0 chrY 6867883 6868043 -17845036 - AluSc SINE Alu -15 294 135 21 0 0 0 chrY 6868049 6868070 -17845009 + AT_rich Low_complexity Low_complexity 1 21 0 868 280 94 4 chrY 6868135 6868410 -17844669 - AluSx SINE Alu -1 301 2 22 35 0 0 chrY 6868450 6868479 -17844600 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chrY 6869703 6869724 -17843355 + AT_rich Low_complexity Low_complexity 1 21 0 231 287 178 11 chrY 6870068 6870242 -17842837 - L1MC4a LINE L1 -1849 5959 5757 887 119 179 12 chrY 6870560 6870728 -17842351 + pTR5 LTR ERV1 1830 2025 -413 364 194 41 31 chrY 6870728 6870826 -17842253 + LTR30 LTR ERV1 544 642 -80 1517 108 0 5 chrY 6870829 6871051 -17842028 + pTR5 LTR ERV1 172 392 -2046 2874 169 78 0 chrY 6871052 6871554 -17841525 + THE1B-int LTR MaLR 1040 1580 0 1524 170 94 26 chrY 6871554 6871895 -17841184 + THE1B LTR MaLR 1 364 0 554 258 26 26 chrY 6872139 6872290 -17840789 - AluJo SINE Alu -30 282 132 443 294 8 8 chrY 6872314 6872440 -17840639 - AluJo SINE Alu -175 127 2 336 358 8 0 chrY 6872454 6872577 -17840502 - AluJ SINE Alu -178 124 1 21 36 0 0 chrY 6872781 6872809 -17840270 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chrY 6873160 6873183 -17839896 + AT_rich Low_complexity Low_complexity 1 23 0 2070 128 3 3 chrY 6873834 6874132 -17838947 + AluY SINE Alu 1 298 -13 1646 156 14 21 chrY 6874414 6874703 -17838376 + AluSc SINE Alu 1 287 -22 717 265 29 5 chrY 6874823 6875027 -17838052 + MER2 DNA MER2_type 2 210 -135 255 259 62 0 chrY 6875290 6875371 -17837708 - MIR SINE MIR 0 262 177 1452 146 0 0 chrY 6875375 6875594 -17837485 - AluSq SINE Alu -14 299 81 1811 122 3 53 chrY 6875661 6875964 -17837115 + AluY SINE Alu 1 288 -23 1184 101 0 6 chrY 6875968 6876147 -17836932 + (GGAAA)n Simple_repeat Simple_repeat 3 180 0 414 232 0 0 chrY 6877063 6877132 -17835947 - FRAM SINE Alu -35 131 63 2386 216 11 2 chrY 6877136 6877604 -17835475 + MER1A DNA MER1_type 19 490 -39 8886 34 1 0 chrY 6877604 6878679 -17834400 - L1PA2 LINE L1 -1333 4813 3738 7686 24 0 0 chrY 6878679 6880022 -17833057 + L1PA2 LINE L1 4810 6153 -2 1867 134 69 0 chrY 6880030 6880306 -17832773 + AluSq SINE Alu 1 295 -18 237 158 0 0 chrY 6880481 6880519 -17832560 + MER1A DNA MER1_type 479 516 -17 814 278 102 4 chrY 6881198 6881443 -17831636 - AluSq SINE Alu -44 269 1 24 85 0 0 chrY 6881536 6881595 -17831484 + AT_rich Low_complexity Low_complexity 1 59 0 461 253 0 0 chrY 6881839 6881934 -17831145 - AluJb SINE Alu -131 181 87 249 239 92 18 chrY 6881943 6882052 -17831027 + L1MC5 LINE L1 7656 7772 -189 22 35 0 0 chrY 6882099 6882128 -17830951 + AT_rich Low_complexity Low_complexity 1 29 0 1930 134 0 36 chrY 6883779 6884085 -17828994 - AluY SINE Alu -15 296 2 22 0 0 0 chrY 6884613 6884635 -17828444 + AT_rich Low_complexity Low_complexity 1 22 0 227 170 0 0 chrY 6885696 6885743 -17827336 + LTR66 LTR ERVL 393 439 -171 262 261 0 22 chrY 6885753 6885845 -17827234 + L1MC4 LINE L1 6614 6703 -1339 1926 108 35 3 chrY 6885846 6886134 -17826945 - AluY SINE Alu -14 297 1 2609 61 0 0 chrY 6886245 6886556 -17826523 + AluY SINE Alu 1 311 0 435 151 8 17 chrY 6886564 6886683 -17826396 + (TA)n Simple_repeat Simple_repeat 2 119 0 285 223 43 11 chrY 6886709 6886803 -17826276 + L1MC4 LINE L1 6608 6704 -1338 23 0 0 0 chrY 6887459 6887482 -17825597 + AT_rich Low_complexity Low_complexity 1 23 0 30 77 0 0 chrY 6888140 6888205 -17824874 + AT_rich Low_complexity Low_complexity 1 65 0 860 249 144 4 chrY 6888310 6888567 -17824512 + AluSg SINE Alu 7 299 -11 23 33 0 0 chrY 6888678 6888708 -17824371 + AT_rich Low_complexity Low_complexity 1 30 0 3467 211 24 14 chrY 6888710 6889470 -17823609 - L1PA10 LINE L1 -1 6167 5401 1602 177 3 31 chrY 6889519 6889807 -17823272 - AluSq SINE Alu -23 290 11 286 130 87 76 chrY 6889998 6890090 -17822989 + MER20 DNA MER1_type 127 219 0 2375 288 45 0 chrY 6890360 6890934 -17822145 - MER52A LTR ERV1 0 1755 1156 1094 132 6 0 chrY 6890934 6891101 -17821978 + ERVL-A1 LTR ERVL 714 881 -4773 2228 160 46 64 chrY 6891101 6891601 -17821478 - LTR22B LTR ERVK 0 492 2 5065 151 14 20 chrY 6891602 6892410 -17820669 - HERVK22 LTR ERVK 0 6837 6033 7959 86 3 8 chrY 6892410 6893487 -17819592 - MER11C LTR ERVK 0 1071 1 5065 151 14 20 chrY 6893487 6893528 -17819551 - HERVK22 LTR ERVK -804 6033 5993 30494 139 25 18 chrY 6893556 6893631 -17819448 - HERVK22 LTR ERVK -951 5886 5813 2021 128 0 4 chrY 6893631 6893912 -17819167 - AluY SINE Alu -29 282 3 30494 139 25 18 chrY 6893912 6898775 -17814304 - HERVK22 LTR ERVK -1024 5813 911 2709 195 2 6 chrY 6898782 6899269 -17813810 - HERVK22 LTR ERVK -6345 492 8 2414 164 41 31 chrY 6899277 6899764 -17813315 - LTR22B LTR ERVK 0 492 1 14023 195 26 7 chrY 6899764 6902965 -17810114 + ERVL-A1 LTR ERVL 876 4613 -1151 4596 135 19 26 chrY 6902977 6903735 -17809344 + ERVL-A1 LTR ERVL 4901 5652 -2 1858 168 63 16 chrY 6903737 6904119 -17808960 + MLT2A1 LTR ERVL 1 400 -44 23 68 0 0 chrY 6904313 6904357 -17808722 + AT_rich Low_complexity Low_complexity 1 44 0 297 228 0 0 chrY 6905098 6905155 -17807924 - MER20 DNA MER1_type -73 146 90 236 357 21 36 chrY 6905212 6905352 -17807727 + L2 LINE L2 2791 2928 -386 24 32 0 0 chrY 6905851 6905882 -17807197 + AT_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chrY 6906530 6906554 -17806525 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chrY 6906622 6906650 -17806429 + AT_rich Low_complexity Low_complexity 1 28 0 286 279 61 35 chrY 6906700 6906897 -17806182 + L1M4c LINE L1 2295 2496 -3888 3454 260 99 40 chrY 6906924 6908632 -17804447 + L1M4c LINE L1 25 1834 -4550 3934 55 2 0 chrY 6908719 6909214 -17803865 - L1PA3 LINE L1 -3 6152 5657 1823 144 0 7 chrY 6909215 6909493 -17803586 - AluY SINE Alu -35 276 1 494 65 0 0 chrY 6909495 6909557 -17803522 - Alu SINE Alu -11 301 240 472 200 11 0 chrY 6909557 6909647 -17803432 - MER21B LTR ERV1 -522 341 251 2808 305 12 20 chrY 6909660 6910500 -17802579 - MER52A LTR ERV1 0 1755 923 607 321 98 4 chrY 6910468 6910733 -17802346 - MER52A LTR ERV1 -659 1096 807 * 332 236 23 23 chrY 6910789 6911103 -17801976 + (CCCTAA)n Simple_repeat Simple_repeat 1 314 0 222 128 0 0 chrY 6911122 6911161 -17801918 + (CCCCAA)n Simple_repeat Simple_repeat 4 42 0 207 182 0 45 chrY 6911299 6911409 -17801670 + (CCCTAA)n Simple_repeat Simple_repeat 5 109 0 336 275 22 34 chrY 6911432 6911610 -17801469 + (CCCTAA)n Simple_repeat Simple_repeat 5 180 0 181 200 16 24 chrY 6911632 6911757 -17801322 + (CCCTAA)n Simple_repeat Simple_repeat 3 126 0 290 175 6 44 chrY 6911949 6912109 -17800970 + (CCCTAA)n Simple_repeat Simple_repeat 5 158 0 294 149 0 64 chrY 6912431 6912572 -17800507 + (CCCTAA)n Simple_repeat Simple_repeat 1 132 0 245 195 17 17 chrY 6912587 6912705 -17800374 + (CCCTAA)n Simple_repeat Simple_repeat 3 120 0 371 183 0 39 chrY 6912716 6912982 -17800097 + (CCCTAA)n Simple_repeat Simple_repeat 1 255 0 485 172 24 18 chrY 6913046 6913215 -17799864 + (CCCTAA)n Simple_repeat Simple_repeat 6 175 0 707 318 58 18 chrY 6913403 6914003 -17799076 + L1M4 LINE L1 3676 4299 -1847 30 45 0 0 chrY 6914514 6914558 -17798521 + AT_rich Low_complexity Low_complexity 1 44 0 1926 142 10 0 chrY 6914570 6914859 -17798220 - AluY SINE Alu -19 292 1 21 0 0 0 chrY 6914945 6914966 -17798113 + AT_rich Low_complexity Low_complexity 1 21 0 748 168 147 19 chrY 6915228 6915419 -17797660 + AluJb SINE Alu 19 289 -23 1864 160 0 7 chrY 6915481 6915805 -17797274 + AluSx SINE Alu 1 312 0 532 256 47 23 chrY 6916033 6916205 -17796874 + AluJo SINE Alu 121 296 -16 2272 231 91 46 chrY 6916212 6917156 -17795923 + L1M4 LINE L1 4403 5389 -757 235 340 90 33 chrY 6918420 6918632 -17794447 - TAR1 Satellite telomeric -123 1988 1765 672 245 86 27 chrY 6919010 6919391 -17793688 + L1MC/D LINE L1 5155 5556 -743 997 186 0 11 chrY 6919391 6919574 -17793505 + MER34C LTR ERV1 38 218 -367 518 214 7 0 chrY 6919580 6919725 -17793354 + CT-rich Low_complexity Low_complexity 2 147 0 1409 198 4 8 chrY 6919743 6920006 -17793073 - AluSg SINE Alu -33 277 16 245 217 67 0 chrY 6920024 6920084 -17792995 + MER34C LTR ERV1 211 274 -311 557 216 0 0 chrY 6920084 6920186 -17792893 - MLT2B3 LTR ERVL -452 102 1 1163 247 25 25 chrY 6920186 6920619 -17792460 + MER31-int LTR ERV1 1062 1494 -3442 318 195 121 116 chrY 6920777 6920817 -17792262 + MER31-int LTR ERV1 1808 1846 -3090 1892 143 40 7 chrY 6920817 6921118 -17791961 - AluSq SINE Alu 0 313 3 318 195 121 116 chrY 6921118 6921292 -17791787 + MER31-int LTR ERV1 1846 2023 -2913 3503 142 0 21 chrY 6921295 6921815 -17791264 + MER9 LTR ERVK 3 511 0 11117 90 73 35 chrY 6921815 6922578 -17790501 + HERVK9 LTR ERVK 1 734 -5182 192 214 0 71 chrY 6922578 6922634 -17790445 + MER5B DNA MER1_type 58 109 -69 11117 90 73 35 chrY 6922634 6923475 -17789604 + HERVK9 LTR ERVK 734 1723 -4193 6675 132 10 25 chrY 6923477 6924548 -17788531 + MER11C LTR ERVK 3 1057 -14 4237 83 2 0 chrY 6924587 6925131 -17787948 + HERVK9 LTR ERVK 1718 2262 -3654 2877 59 6 0 chrY 6925131 6925488 -17787591 + HERVK9 LTR ERVK 2428 2786 -3130 13735 98 11 28 chrY 6925488 6927445 -17785634 + HERVK9 LTR ERVK 3711 5635 -281 2197 130 14 13 chrY 6927469 6927820 -17785259 + HERVK9 LTR ERVK 5635 5913 -3 3558 139 0 10 chrY 6927822 6928338 -17784741 + MER9 LTR ERVK 1 511 0 678 269 40 45 chrY 6928347 6928700 -17784379 + MER31-int LTR ERV1 2939 3289 -1647 855 247 63 26 chrY 6928785 6929056 -17784023 + MER31-int LTR ERV1 3342 3622 -1314 2514 154 26 100 chrY 6929056 6929709 -17783370 + MER4B LTR ERV1 4 779 0 271 178 59 69 chrY 6929719 6929820 -17783259 + MER31-int LTR ERV1 3623 3722 -1214 1969 264 79 14 chrY 6929912 6930797 -17782282 - L1M4 LINE L1 -698 5486 4559 21 0 0 0 chrY 6932330 6932351 -17780728 + AT_rich Low_complexity Low_complexity 1 21 0 220 281 50 50 chrY 6934163 6934266 -17778813 + L2 LINE L2 2321 2426 -888 1709 183 7 0 chrY 6934266 6934555 -17778524 + AluSx SINE Alu 3 293 -19 220 281 50 50 chrY 6934555 6934590 -17778489 + L2 LINE L2 2425 2459 -855 1645 184 0 19 chrY 6934590 6934906 -17778173 + AluSx SINE Alu 1 310 -2 2253 163 14 0 chrY 6935011 6935361 -17777718 - THE1A LTR MaLR 0 355 1 293 284 114 49 chrY 6935829 6936416 -17776663 - L1M4 LINE L1 -2401 3745 3121 324 322 9 0 chrY 6936455 6936570 -17776509 - L1M4 LINE L1 -3124 3022 2907 1988 291 34 23 chrY 6936593 6937125 -17775954 - HAL1 LINE L1 -458 2049 1503 1806 132 7 65 chrY 6937125 6937435 -17775644 - AluSp SINE Alu -21 292 1 1988 291 34 23 chrY 6937435 6937726 -17775353 - HAL1 LINE L1 -1004 1503 1217 237 205 128 26 chrY 6938004 6938082 -17774997 - L2 LINE L2 -50 3222 3137 1806 167 3 0 chrY 6938114 6938402 -17774677 + AluY SINE Alu 4 292 -19 1954 147 3 0 chrY 6938881 6939187 -17773892 + AluSp SINE Alu 1 307 -6 375 282 16 75 chrY 6939550 6939738 -17773341 + MER5B DNA MER1_type 2 178 0 1479 211 43 0 chrY 6939837 6940116 -17772963 - AluSg SINE Alu -19 291 1 24 0 0 0 chrY 6940116 6940140 -17772939 + AT_rich Low_complexity Low_complexity 1 24 0 1229 188 7 72 chrY 6940157 6940450 -17772629 + AluJb SINE Alu 7 280 -32 303 157 96 12 chrY 6940456 6940539 -17772540 + L1MC4 LINE L1 6614 6703 -1339 200 100 25 0 chrY 6943234 6943274 -17769805 + (TG)n Simple_repeat Simple_repeat 2 42 0 549 301 51 36 chrY 6944383 6944772 -17768307 + SST1 Satellite centromeric 207 601 -962 244 319 68 47 chrY 6945240 6945623 -17767456 + SST1 Satellite centromeric 1148 1538 -25 210 71 0 0 chrY 6945668 6945696 -17767383 + (TG)n Simple_repeat Simple_repeat 1 28 0 229 274 79 55 chrY 6948062 6948226 -17764853 + SST1 Satellite centromeric 800 967 -596 188 26 0 105 chrY 6948495 6948533 -17764546 + (CA)n Simple_repeat Simple_repeat 1 34 0 253 348 35 31 chrY 6949385 6949672 -17763407 - SST1 Satellite centromeric -962 601 314 208 247 25 0 chrY 6950908 6950989 -17762090 + (CA)n Simple_repeat Simple_repeat 1 83 0 228 86 0 0 chrY 6953375 6953410 -17759669 + (CA)n Simple_repeat Simple_repeat 2 36 0 276 299 0 0 chrY 6953744 6953821 -17759258 - SST1 Satellite centromeric -324 1239 1163 414 305 55 52 chrY 6954302 6954816 -17758263 - SST1 Satellite centromeric -952 611 97 21 0 0 0 chrY 6955311 6955332 -17757747 + AT_rich Low_complexity Low_complexity 1 21 0 4407 111 5 3 chrY 6956955 6957541 -17755538 - LTR14C LTR ERVK 0 587 1 11268 106 13 1 chrY 6957541 6959646 -17753433 - HERVK14C LTR ERVK 0 7417 5289 4512 94 19 5 chrY 6959627 6960256 -17752823 - HERVK14C LTR ERVK -4863 2554 1917 * 11917 122 13 22 chrY 6960248 6962040 -17751039 - HERVK14C LTR ERVK -5640 1777 1 4069 98 3 46 chrY 6962040 6962375 -17750704 - LTR14C LTR ERVK 0 587 288 1902 121 48 0 chrY 6962375 6962648 -17750431 + AluY SINE Alu 1 286 -25 4069 98 3 46 chrY 6962648 6962925 -17750154 - LTR14C LTR ERVK -299 288 1 1662 236 25 25 chrY 6963655 6964104 -17748975 - LTR2 LTR ERV1 0 449 1 20069 213 49 49 chrY 6964104 6971806 -17741273 - HERVE LTR ERV1 -2 7811 1 1574 225 70 16 chrY 6971806 6972030 -17741049 - LTR2 LTR ERV1 0 449 239 183 80 0 0 chrY 6972030 6972055 -17741024 + (CAGAA)n Simple_repeat Simple_repeat 1 25 0 1574 225 70 16 chrY 6972055 6972256 -17740823 - LTR2 LTR ERV1 -210 239 1 200 149 21 0 chrY 6972844 6972891 -17740188 + (CA)n Simple_repeat Simple_repeat 1 48 0 198 0 0 0 chrY 6973146 6973168 -17739911 + (T)n Simple_repeat Simple_repeat 1 22 0 501 279 58 58 chrY 6973823 6974217 -17738862 - SST1 Satellite centromeric -963 600 207 306 269 81 31 chrY 6975065 6975225 -17737854 - SST1 Satellite centromeric -11 1552 1385 235 303 0 0 chrY 6975377 6975453 -17737626 - SST1 Satellite centromeric -325 1238 1163 272 306 68 62 chrY 6975950 6976417 -17736662 - SST1 Satellite centromeric -962 601 132 468 278 69 71 chrY 6977563 6977955 -17735124 - SST1 Satellite centromeric -25 1538 1148 465 271 80 74 chrY 6978423 6978911 -17734168 - SST1 Satellite centromeric -962 601 111 2572 164 29 134 chrY 6979815 6980576 -17732503 - LTR1 LTR ERV1 -104 681 1 284 239 122 94 chrY 6980681 6980861 -17732218 - LTR33A LTR ERVL -275 248 64 464 202 12 0 chrY 6981776 6981860 -17731219 - AluJo SINE Alu -23 289 205 * 657 221 89 13 chrY 6981852 6981896 -17731183 - AluJo SINE Alu -132 180 141 186 43 0 0 chrY 6981896 6981919 -17731160 + (TTAA)n Simple_repeat Simple_repeat 1 23 0 657 221 89 13 chrY 6981919 6982032 -17731047 - AluJo SINE Alu -171 141 11 207 0 0 0 chrY 6982309 6982332 -17730747 + (TA)n Simple_repeat Simple_repeat 1 23 0 360 94 0 0 chrY 6984265 6984318 -17728761 + (TCC)n Simple_repeat Simple_repeat 1 53 0 1684 49 0 0 chrY 6985425 6985630 -17727449 - L1PA2 LINE L1 0 6155 5951 2223 92 9 3 chrY 6985631 6985947 -17727132 - L1PA6 LINE L1 0 6154 5837 756 71 20 0 chrY 6985947 6986046 -17727033 + L1P3 LINE L1 5432 5532 -622 313 263 75 38 chrY 6991298 6991431 -17721648 + MLT1F LTR MaLR 370 507 -35 865 226 5 0 chrY 6991933 6992119 -17720960 + AluSg/x SINE Alu 123 309 -1 1168 196 3 93 chrY 6992159 6992470 -17720609 + AluSg SINE Alu 5 287 -13 183 188 0 0 chrY 6992483 6992531 -17720548 + GA-rich Low_complexity Low_complexity 2 49 0 285 177 11 0 chrY 6992552 6992617 -17720462 - L1MA4 LINE L1 -11 6289 6223 499 279 35 0 chrY 6992619 6992791 -17720288 + L1MA4 LINE L1 5999 6176 -124 230 167 0 121 chrY 6992808 6992838 -17720241 + L1MA3 LINE L1 6152 6171 -134 1260 230 10 30 chrY 6992838 6993142 -17719937 + AluJo SINE Alu 2 299 -13 230 167 0 121 chrY 6993142 6993177 -17719902 + L1MA3 LINE L1 6171 6209 -96 1504 191 4 14 chrY 6993218 6993496 -17719583 - AluSx SINE Alu -35 277 3 257 201 87 57 chrY 6995421 6995624 -17717455 + L1P1 LINE L1 5257 5471 -684 301 91 0 0 chrY 6995627 6995671 -17717408 - L1PA6 LINE L1 -5 6149 6106 512 222 67 39 chrY 6995687 6995867 -17717212 + L1M4 LINE L1 5417 5601 -573 368 213 24 37 chrY 6996021 6996170 -17716909 + L1M4 LINE L1 5284 5423 -755 298 146 0 0 chrY 6996170 6996218 -17716861 - L1PA6 LINE L1 -1 6153 6106 545 225 60 33 chrY 6996232 6996414 -17716665 + L1M4 LINE L1 5415 5601 -577 721 181 33 106 chrY 6996599 6996713 -17716366 + L1M4 LINE L1 5306 5427 -757 309 125 0 0 chrY 6996713 6996761 -17716318 - L1PA6 LINE L1 -1 6153 6106 721 181 33 106 chrY 6996761 6996952 -17716127 + L1M4 LINE L1 5427 5601 -583 322 231 175 7 chrY 6997112 6997255 -17715824 + L1MB5 LINE L1 5254 5420 -746 298 143 0 0 chrY 6997256 6997305 -17715774 - L1PA6 LINE L1 0 6154 6106 1208 254 117 34 chrY 6997319 6997994 -17715085 + L1MB5 LINE L1 5415 6161 -13 805 248 26 26 chrY 6999447 6999677 -17713402 + AluJo SINE Alu 1 230 -82 21 0 0 0 chrY 7000892 7000913 -17712166 + AT_rich Low_complexity Low_complexity 1 21 0 1665 176 0 10 chrY 7001190 7001491 -17711588 - AluSg SINE Alu -12 298 1 1852 142 7 3 chrY 7003492 7003794 -17709285 + AluSc SINE Alu 1 303 -6 207 178 89 0 chrY 7003960 7004005 -17709074 - L2 LINE L2 -12 3260 3212 1838 147 0 26 chrY 7004271 7004584 -17708495 - AluSc SINE Alu -3 306 2 23 78 0 0 chrY 7005872 7005923 -17707156 + AT_rich Low_complexity Low_complexity 1 51 0 324 48 0 0 chrY 7005952 7005994 -17707085 + (CA)n Simple_repeat Simple_repeat 2 43 0 285 149 231 67 chrY 7006436 7006468 -17706611 - L1MA7 LINE L1 -33 6258 6233 865 236 80 22 chrY 7006468 7006744 -17706335 - AluJb SINE Alu -9 293 2 285 149 231 67 chrY 7006744 7006845 -17706234 - L1MA7 LINE L1 -58 6233 6103 382 147 0 44 chrY 7006935 7007003 -17706076 + MER1B DNA MER1_type 211 275 -64 324 182 0 0 chrY 7007160 7007215 -17705864 + MER1B DNA MER1_type 263 317 -16 496 241 9 0 chrY 7007225 7007333 -17705746 - FLAM_C SINE Alu -32 111 3 1825 148 0 0 chrY 7011888 7012171 -17700908 + AluSq SINE Alu 1 283 -30 305 300 136 39 chrY 7012890 7013170 -17699909 + L2 LINE L2 2196 2502 -812 201 315 27 27 chrY 7014433 7014506 -17698573 - MER5A DNA MER1_type -74 115 43 231 340 38 0 chrY 7014965 7015124 -17697955 + L1M3 LINE L1 5353 5517 -654 23 0 0 0 chrY 7015249 7015272 -17697807 + AT_rich Low_complexity Low_complexity 1 23 0 27 29 0 0 chrY 7015892 7015926 -17697153 + AT_rich Low_complexity Low_complexity 1 34 0 198 0 0 0 chrY 7019742 7019764 -17693315 + (CAGCC)n Simple_repeat Simple_repeat 1 22 0 183 167 0 0 chrY 7020969 7021011 -17692068 + (TGG)n Simple_repeat Simple_repeat 1 42 0 417 90 0 0 chrY 7023537 7023604 -17689475 + (TG)n Simple_repeat Simple_repeat 2 68 0 221 203 0 47 chrY 7025888 7025952 -17687127 + CT-rich Low_complexity Low_complexity 1 61 0 356 323 104 10 chrY 7026061 7026253 -17686826 - L1M4c LINE L1 -5025 1359 1150 828 253 27 54 chrY 7026262 7026558 -17686521 - AluJb SINE Alu -12 300 13 310 311 39 0 chrY 7026671 7026774 -17686305 - L1MCa LINE L1 -4325 2101 1995 * 343 277 0 43 chrY 7026722 7026816 -17686263 + L1MC4 LINE L1 6614 6703 -1339 323 284 42 32 chrY 7026751 7026846 -17686233 - L1MC4 LINE L1 -1333 6709 6614 * 22 0 0 0 chrY 7026944 7026966 -17686113 + AT_rich Low_complexity Low_complexity 1 22 0 2144 262 55 56 chrY 7027024 7028743 -17684336 - L1MA8 LINE L1 -23 6268 4559 27 73 0 0 chrY 7030688 7030743 -17682336 + AT_rich Low_complexity Low_complexity 1 55 0 21 71 0 0 chrY 7031092 7031134 -17681945 + AT_rich Low_complexity Low_complexity 1 42 0 254 251 70 107 chrY 7032181 7032319 -17680760 + L2 LINE L2 2279 2410 -904 1470 223 7 7 chrY 7032319 7032615 -17680464 + AluSx SINE Alu 3 298 -4 254 251 70 107 chrY 7032615 7032663 -17680416 + L2 LINE L2 2410 2458 -856 1284 148 68 30 chrY 7032664 7032927 -17680152 + AluSx SINE Alu 1 273 -39 2311 136 6 0 chrY 7033075 7033428 -17679651 - THE1A LTR MaLR 0 355 1 331 252 56 56 chrY 7033911 7034054 -17679025 - L1MA8 LINE L1 -2410 3736 3594 348 191 16 40 chrY 7034194 7034320 -17678759 + (TA)n Simple_repeat Simple_repeat 1 123 0 661 288 73 74 chrY 7034323 7034828 -17678251 - L1M4 LINE L1 -2739 3407 2850 401 153 56 0 chrY 7034872 7034944 -17678135 + AluSc SINE Alu 192 267 -42 234 0 0 0 chrY 7034956 7034982 -17678097 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 1253 189 27 34 chrY 7036257 7036527 -17676552 + AluSg SINE Alu 6 275 -35 192 77 0 0 chrY 7036527 7036553 -17676526 + (CA)n Simple_repeat Simple_repeat 2 27 0 1253 189 27 34 chrY 7036553 7036579 -17676500 + AluSg SINE Alu 275 300 -10 27 0 0 0 chrY 7040018 7040045 -17673034 + AT_rich Low_complexity Low_complexity 1 27 0 1289 109 0 88 chrY 7040451 7040689 -17672390 - AluSg/x SINE Alu -2 310 94 200 139 0 23 chrY 7041119 7041162 -17671917 + (TTTC)n Simple_repeat Simple_repeat 4 45 0 2460 132 19 8 chrY 7041646 7042017 -17671062 - THE1C LTR MaLR 0 375 1 1251 72 6 6 chrY 7042017 7042184 -17670895 - THE1C-int LTR MaLR 0 1580 1414 9612 178 18 15 chrY 7043858 7045849 -17667230 - L1 LINE L1 -925 5221 3225 241 222 0 28 chrY 7046999 7047071 -17666008 + (TA)n Simple_repeat Simple_repeat 1 70 0 2054 129 0 0 chrY 7047480 7047774 -17665305 + AluSg SINE Alu 1 294 -16 350 233 105 0 chrY 7048392 7048478 -17664601 - MER5B DNA MER1_type -1 177 83 216 0 0 0 chrY 7048809 7048833 -17664246 + (A)n Simple_repeat Simple_repeat 1 24 0 409 234 72 0 chrY 7049193 7049304 -17663775 + MIR SINE MIR 118 236 -26 2217 105 0 0 chrY 7049350 7049645 -17663434 - AluSx SINE Alu -17 295 1 419 212 8 61 chrY 7050522 7050626 -17662453 + AluSg/x SINE Alu 183 280 -30 291 28 0 0 chrY 7050626 7050662 -17662417 + (CA)n Simple_repeat Simple_repeat 2 37 0 419 212 8 61 chrY 7050662 7050689 -17662390 + AluSg/x SINE Alu 280 307 -3 369 0 0 0 chrY 7050731 7050772 -17662307 + (CA)n Simple_repeat Simple_repeat 2 42 0 186 156 0 0 chrY 7057870 7057915 -17655164 + (TG)n Simple_repeat Simple_repeat 2 46 0 301 319 34 17 chrY 7061012 7061131 -17651948 - L1M4c LINE L1 -5019 1365 1245 843 259 57 8 chrY 7061238 7061383 -17651696 - AluJb SINE Alu -36 276 140 252 0 0 0 chrY 7061383 7061411 -17651668 + (TTAA)n Simple_repeat Simple_repeat 2 29 0 843 259 57 8 chrY 7061411 7061528 -17651551 - AluJb SINE Alu -172 140 1 2229 255 66 39 chrY 7061838 7062669 -17650410 - L1MA8 LINE L1 -3 6288 5481 207 0 0 0 chrY 7062669 7062692 -17650387 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2229 255 66 39 chrY 7062692 7063550 -17649529 - L1MA8 LINE L1 -810 5481 4559 182 255 40 114 chrY 7067026 7067130 -17645949 + L2 LINE L2 2321 2412 -902 1961 171 0 0 chrY 7067130 7067434 -17645645 + AluSx SINE Alu 1 304 -8 182 255 40 114 chrY 7067434 7067478 -17645601 + L2 LINE L2 2412 2458 -856 1552 149 58 45 chrY 7067479 7067787 -17645292 + AluSx SINE Alu 1 312 0 2364 128 8 0 chrY 7067893 7068245 -17644834 - THE1A LTR MaLR 0 355 1 362 252 49 49 chrY 7068730 7068873 -17644206 - L1MA8 LINE L1 -2410 3736 3594 275 284 63 36 chrY 7068945 7069248 -17643831 - L1M4 LINE L1 -2660 3486 3176 1388 302 36 32 chrY 7069509 7070021 -17643058 - HAL1 LINE L1 -486 2021 1503 2032 116 3 63 chrY 7070021 7070340 -17642739 - AluSp SINE Alu -13 300 1 1388 302 36 32 chrY 7070340 7070629 -17642450 - HAL1 LINE L1 -1004 1503 1217 206 244 128 26 chrY 7070908 7070986 -17642093 - L2 LINE L2 -50 3222 3137 1778 150 0 4 chrY 7071021 7071325 -17641754 + AluSc SINE Alu 7 309 0 499 324 6 39 chrY 7071592 7071774 -17641305 + MER5B DNA MER1_type 2 177 -1 1856 149 4 0 chrY 7071869 7072186 -17640893 - AluSg SINE Alu 0 318 1 23 33 0 0 chrY 7072189 7072219 -17640860 + AT_rich Low_complexity Low_complexity 1 30 0 1480 170 3 63 chrY 7072222 7072522 -17640557 + AluJb SINE Alu 2 283 -29 261 0 0 0 chrY 7072530 7072559 -17640520 + (TG)n Simple_repeat Simple_repeat 2 30 0 399 127 0 0 chrY 7072559 7072622 -17640457 + (CATATA)n Simple_repeat Simple_repeat 4 66 0 321 26 0 0 chrY 7072645 7072683 -17640396 + (CA)n Simple_repeat Simple_repeat 1 38 0 189 0 0 0 chrY 7072899 7072920 -17640159 + (T)n Simple_repeat Simple_repeat 1 21 0 21 36 0 0 chrY 7073811 7073839 -17639240 + AT_rich Low_complexity Low_complexity 1 28 0 379 268 178 13 chrY 7073882 7074039 -17639040 - L2 LINE L2 -13 3300 3118 359 320 140 30 chrY 7074230 7074602 -17638477 - L2 LINE L2 -1310 2004 1592 745 308 82 6 chrY 7076983 7077301 -17635778 + MER93a LTR ERV1 61 402 0 657 257 123 62 chrY 7077330 7077704 -17635375 + Charlie2 DNA MER1_type 1864 2260 -602 22340 74 6 4 chrY 7077704 7080851 -17632228 - L1PA4 LINE L1 -2906 3240 89 16865 50 2 2 chrY 7080851 7083768 -17629311 + L1PA4 LINE L1 3240 6155 0 1899 154 10 0 chrY 7083773 7083792 -17629287 - AluSp SINE Alu -11 302 285 306 0 0 0 chrY 7083792 7083826 -17629253 + (TG)n Simple_repeat Simple_repeat 1 34 0 1899 154 10 0 chrY 7083826 7084098 -17628981 - AluSp SINE Alu -28 285 8 349 296 22 22 chrY 7084228 7084363 -17628716 + L1ME4a LINE L1 5971 6105 -16 1252 304 96 64 chrY 7085774 7086120 -17626959 - L2 LINE L2 -1177 2137 1804 1302 137 152 41 chrY 7086120 7086390 -17626689 - AluSg SINE Alu 0 300 1 1252 304 96 64 chrY 7086390 7086978 -17626101 - L2 LINE L2 -1510 1804 1173 309 26 0 0 chrY 7087625 7087663 -17625416 + (TG)n Simple_repeat Simple_repeat 1 38 0 722 306 24 5 chrY 7087749 7087955 -17625124 + MIR SINE MIR 1 210 -52 213 233 41 55 chrY 7087953 7088026 -17625053 + MIR SINE MIR 70 141 -67 * 1760 152 7 42 chrY 7088229 7088538 -17624541 + AluSg SINE Alu 1 298 -12 197 246 168 54 chrY 7088722 7088889 -17624190 + L2 LINE L2 3126 3311 -2 186 43 0 0 chrY 7089204 7089227 -17623852 + (CA)n Simple_repeat Simple_repeat 2 24 0 474 18 0 0 chrY 7089524 7089579 -17623500 + (TTA)n Simple_repeat Simple_repeat 2 56 0 251 341 65 0 chrY 7090172 7090295 -17622784 - MIR SINE MIR -71 191 61 1303 182 17 14 chrY 7090472 7090763 -17622316 + L1MA8 LINE L1 5998 6289 -2 2427 209 69 27 chrY 7090839 7091422 -17621657 - MER90 LTR ERV1 -7 607 1 467 302 126 28 chrY 7091809 7092185 -17620894 + L1MC4a LINE L1 5502 5818 -303 237 184 11 23 chrY 7092200 7092211 -17620868 + (TA)n Simple_repeat Simple_repeat 2 12 -75 1629 201 3 10 chrY 7092211 7092499 -17620580 + AluJb SINE Alu 1 286 -26 237 184 11 23 chrY 7092499 7092574 -17620505 + (TA)n Simple_repeat Simple_repeat 12 87 0 2116 276 55 41 chrY 7092796 7093719 -17619360 + L1MEc LINE L1 46 987 -5409 1728 147 48 0 chrY 7093719 7094012 -17619067 + AluY SINE Alu 1 307 -4 2116 276 55 41 chrY 7094012 7094139 -17618940 + L1MEc LINE L1 987 1111 -5285 995 225 38 86 chrY 7094154 7094549 -17618530 + MLT1B LTR MaLR 11 386 -4 3625 255 55 32 chrY 7094619 7095349 -17617730 + L1MEc LINE L1 2384 3096 -3119 1637 180 7 0 chrY 7095349 7095621 -17617458 + AluSx SINE Alu 1 274 -38 3625 255 55 32 chrY 7095621 7096701 -17616378 + L1MEc LINE L1 3096 4236 -1979 5438 72 5 11 chrY 7096710 7097556 -17615523 + L1PA3 LINE L1 1 969 -5177 3934 19 0 0 chrY 7097552 7098038 -17615041 - L1HS LINE L1 -821 5325 4840 * 7091 9 0 2 chrY 7098036 7098880 -17614199 + L1HS LINE L1 5314 6155 0 13653 54 20 1 chrY 7099059 7100941 -17612138 + L1PA3 LINE L1 936 2854 -3292 17562 42 6 1 chrY 7100948 7103944 -17609135 + L1PA3 LINE L1 3170 6155 0 395 269 78 13 chrY 7103953 7104261 -17608818 + L1MEc LINE L1 4250 4577 -1638 1117 278 56 24 chrY 7104367 7104954 -17608125 + L1MEc LINE L1 4595 5200 -1015 937 215 76 95 chrY 7104968 7105336 -17607743 - MLT1A1 LTR MaLR -4 361 1 2075 265 73 21 chrY 7105337 7105994 -17607085 - MLT1A1-int LTR MaLR -1 1734 1044 1597 144 92 50 chrY 7106029 7106192 -17606887 + THE1C LTR MaLR 1 156 -219 2388 133 19 0 chrY 7106192 7106560 -17606519 + THE1C LTR MaLR 1 375 0 1597 144 92 50 chrY 7106560 7106756 -17606323 + THE1C LTR MaLR 156 375 0 824 246 16 47 chrY 7106756 7107023 -17606056 - MLT1A1-int LTR MaLR -645 1006 759 3502 196 26 32 chrY 7107064 7107486 -17605593 - MLT1A1-int LTR MaLR -933 802 386 2438 80 0 3 chrY 7107486 7107798 -17605281 - AluY SINE Alu 0 311 1 3502 196 26 32 chrY 7107798 7108181 -17604898 - MLT1A1-int LTR MaLR -1349 386 2 346 293 9 0 chrY 7108223 7108329 -17604750 - MLT1A2 LTR MaLR -72 302 196 612 297 206 17 chrY 7108372 7108732 -17604347 + L2 LINE L2 2880 3307 -6 433 116 72 7 chrY 7109186 7109324 -17603755 + (TA)n Simple_repeat Simple_repeat 1 147 0 1467 161 65 8 chrY 7109434 7109694 -17603385 + AluSg SINE Alu 1 275 -35 1738 158 7 27 chrY 7109798 7110095 -17602984 - AluJb SINE Alu -21 291 1 4038 55 0 0 chrY 7110467 7110973 -17602106 - L1PA3 LINE L1 -3 6152 5647 1895 169 0 3 chrY 7111323 7111625 -17601454 + AluSg SINE Alu 1 301 -9 301 340 44 50 chrY 7111871 7112030 -17601049 - MIR3 SINE MIR -49 159 2 365 329 112 38 chrY 7112541 7112854 -17600225 + L3 LINE CR1 715 1050 -527 531 246 29 41 chrY 7112861 7113032 -17600047 + MIR SINE MIR 94 262 0 654 344 120 41 chrY 7113037 7113522 -17599557 + L3 LINE CR1 1054 1576 -1 2080 147 3 0 chrY 7113794 7114106 -17598973 + AluSp SINE Alu 1 313 0 1977 157 0 10 chrY 7114167 7114472 -17598607 + AluSx SINE Alu 1 302 -10 28 29 0 0 chrY 7114998 7115033 -17598046 + AT_rich Low_complexity Low_complexity 1 35 0 505 238 47 12 chrY 7115098 7115270 -17597809 + L1MA4 LINE L1 5999 6176 -124 1146 234 13 57 chrY 7115283 7115582 -17597497 + AluJo SINE Alu 14 299 -13 1400 201 36 14 chrY 7115643 7115922 -17597157 - AluSx SINE Alu -25 287 3 1447 182 37 4 chrY 7116413 7116682 -17596397 + AluSg SINE Alu 12 289 -21 1089 197 112 22 chrY 7118604 7119005 -17594074 + L1MB5 LINE L1 5254 5690 -490 794 244 23 18 chrY 7119121 7119404 -17593675 + L1MB5 LINE L1 5905 6184 0 252 0 0 0 chrY 7120632 7120660 -17592419 + (TTA)n Simple_repeat Simple_repeat 3 30 0 4018 47 0 8 chrY 7120660 7121155 -17591924 - L1PA3 LINE L1 -18 6137 5647 28 0 0 0 chrY 7121263 7121291 -17591788 + AT_rich Low_complexity Low_complexity 1 28 0 801 288 33 25 chrY 7121398 7121672 -17591407 + AluJo SINE Alu 1 276 -36 26 0 0 0 chrY 7122788 7122814 -17590265 + AT_rich Low_complexity Low_complexity 1 26 0 1694 189 0 3 chrY 7123090 7123397 -17589682 - AluSg SINE Alu 0 310 5 181 353 94 0 chrY 7125133 7125218 -17587861 + L2 LINE L2 2909 3001 -312 1759 150 11 4 chrY 7125379 7125686 -17587393 + AluSc SINE Alu 1 309 0 2023 131 0 7 chrY 7125851 7126149 -17586930 + AluY SINE Alu 1 296 -15 1735 171 7 7 chrY 7126488 7126780 -17586299 - AluSc SINE Alu -17 292 1 22 70 0 0 chrY 7128056 7128099 -17584980 + AT_rich Low_complexity Low_complexity 1 43 0 225 0 0 0 chrY 7128124 7128149 -17584930 + (CA)n Simple_repeat Simple_repeat 2 26 0 21 57 0 0 chrY 7128286 7128321 -17584758 + AT_rich Low_complexity Low_complexity 1 35 0 254 125 243 97 chrY 7128591 7128627 -17584452 - L1MA7 LINE L1 -29 6262 6233 656 241 130 11 chrY 7128627 7128771 -17584308 - AluJb SINE Alu -8 294 168 333 0 0 0 chrY 7128771 7128808 -17584271 + (TG)n Simple_repeat Simple_repeat 2 38 0 656 241 130 11 chrY 7128808 7128924 -17584155 - AluJb SINE Alu -134 168 3 254 125 243 97 chrY 7128924 7129031 -17584048 - L1MA7 LINE L1 -58 6233 6098 306 206 0 44 chrY 7129116 7129184 -17583895 + MER1B DNA MER1_type 211 275 -64 225 254 0 0 chrY 7129344 7129399 -17583680 + MER1B DNA MER1_type 266 320 -13 456 242 0 0 chrY 7129420 7129519 -17583560 - AluJ/FLAM SINE Alu -211 101 3 315 288 99 101 chrY 7130938 7131762 -17581317 - L1M2a LINE L1 -5490 1678 1185 279 0 0 0 chrY 7134525 7134556 -17578523 + (TG)n Simple_repeat Simple_repeat 2 32 0 1706 189 0 0 chrY 7134556 7134841 -17578238 - AluSx SINE Alu -27 285 1 23 0 0 0 chrY 7134910 7134933 -17578146 + AT_rich Low_complexity Low_complexity 1 23 0 1673 178 4 0 chrY 7135150 7135420 -17577659 + AluSq SINE Alu 13 283 -30 409 314 125 29 chrY 7136141 7136421 -17576658 + L2 LINE L2 2196 2502 -812 315 0 0 0 chrY 7137521 7137556 -17575523 + (TG)n Simple_repeat Simple_repeat 2 36 0 255 224 0 0 chrY 7137556 7137623 -17575456 + T-rich Low_complexity Low_complexity 1 67 0 205 311 27 27 chrY 7137706 7137780 -17575299 - MER5A DNA MER1_type -73 116 43 271 269 69 34 chrY 7138225 7138400 -17574679 + L1M2 LINE L1 5340 5520 -780 34 24 0 0 chrY 7140469 7140510 -17572569 + AT_rich Low_complexity Low_complexity 1 41 0 22 0 0 0 chrY 7140788 7140810 -17572269 + AT_rich Low_complexity Low_complexity 1 22 0 7288 39 11 0 chrY 7140989 7141921 -17571158 - L1PA4 LINE L1 -1 6154 5215 13158 38 1 0 chrY 7141921 7143593 -17569486 + L1PA4 LINE L1 3555 5228 -918 3217 173 35 54 chrY 7143607 7144423 -17568656 + L1PA16 LINE L1 5357 6157 -9 21 36 0 0 chrY 7145379 7145407 -17567672 + AT_rich Low_complexity Low_complexity 1 28 0 1609 182 26 0 chrY 7149944 7150213 -17562866 - AluSx SINE Alu -30 282 7 1155 248 3 18 chrY 7150223 7150509 -17562570 - AluJo SINE Alu -23 289 8 1762 92 11 8 chrY 7151194 7151511 -17561568 - L1PA5 LINE L1 -580 5574 5328 4116 86 2 9 chrY 7151511 7152076 -17561003 + L1PA5 LINE L1 5586 6154 0 876 250 68 0 chrY 7155057 7155249 -17557830 + AluJb SINE Alu 78 282 -30 303 28 0 0 chrY 7155274 7155310 -17557769 + (CA)n Simple_repeat Simple_repeat 1 36 0 33 43 0 0 chrY 7155758 7155805 -17557274 + AT_rich Low_complexity Low_complexity 1 47 0 239 286 6 57 chrY 7156426 7156601 -17556478 + GA-rich Low_complexity Low_complexity 1 166 0 1100 95 14 0 chrY 7161229 7161377 -17551702 + MER11B LTR ERVK 1 150 -1086 6408 102 14 24 chrY 7161453 7161474 -17551605 + MER11C LTR ERVK 101 121 -950 6630 29 9 0 chrY 7161474 7162209 -17550870 - L1PA2 LINE L1 -5 6150 5409 6408 102 14 24 chrY 7162209 7163153 -17549926 + MER11C LTR ERVK 121 1057 -14 230 257 68 0 chrY 7166203 7166351 -17546728 + (TA)n Simple_repeat Simple_repeat 2 159 0 31 0 0 0 chrY 7166378 7166409 -17546670 + AT_rich Low_complexity Low_complexity 1 31 0 10622 139 45 9 chrY 7166711 7168548 -17544531 + L1PA7 LINE L1 2706 4608 -1538 1602 95 9 3 chrY 7168560 7169393 -17543686 + L1PA7 LINE L1 5231 6150 -4 283 239 49 7 chrY 7169393 7169535 -17543544 + (TA)n Simple_repeat Simple_repeat 1 148 0 184 259 86 0 chrY 7169859 7169917 -17543162 + L2 LINE L2 2548 2610 -704 3172 38 18 0 chrY 7170204 7170598 -17542481 - L1PA4 LINE L1 -1445 4701 4301 7455 54 3 16 chrY 7170598 7172076 -17541003 + L1PA4 LINE L1 4687 6153 -2 21 36 0 0 chrY 7173102 7173130 -17539949 + AT_rich Low_complexity Low_complexity 1 28 0 504 45 0 0 chrY 7173142 7173209 -17539870 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 1390 228 0 3 chrY 7173215 7173518 -17539561 + AluSg SINE Alu 1 302 -8 35 24 0 0 chrY 7173779 7173821 -17539258 + AT_rich Low_complexity Low_complexity 1 42 0 1002 292 29 18 chrY 7174326 7174607 -17538472 - AluJo SINE Alu -18 284 1 27 0 0 0 chrY 7174715 7174742 -17538337 + AT_rich Low_complexity Low_complexity 1 27 0 687 253 34 34 chrY 7176028 7176206 -17536873 - AluJb SINE Alu -133 179 2 422 277 39 0 chrY 7176207 7176361 -17536718 - L1MA4 LINE L1 -124 6176 6013 687 143 0 0 chrY 7176374 7176472 -17536607 - AluS SINE Alu -213 99 2 1452 118 5 0 chrY 7176529 7176732 -17536347 - AluSp SINE Alu -8 305 102 1322 254 3 17 chrY 7177034 7177322 -17535757 + AluSx SINE Alu 3 286 -16 1208 269 3 29 chrY 7177384 7177693 -17535386 - AluJo SINE Alu 0 302 2 3509 140 283 0 chrY 7177697 7177918 -17535161 - LTR12 LTR ERV1 0 826 669 2872 7 0 0 chrY 7177918 7178224 -17534855 - AluY SINE Alu -5 306 1 3509 140 283 0 chrY 7178224 7178646 -17534433 - LTR12 LTR ERV1 -157 669 1 3681 132 74 0 chrY 7178649 7179227 -17533852 - HERV9 LTR ERV1 -21 8378 7758 1767 159 19 34 chrY 7179223 7180240 -17532839 - HERV17 LTR ERV1 -5176 1720 706 * 5748 130 6 10 chrY 7180241 7181110 -17531969 - HERV17 LTR ERV1 -3455 4944 4080 20153 126 29 47 chrY 7181117 7184646 -17528433 - HERV17 LTR ERV1 -236 478 43 229 250 0 0 chrY 7184653 7184701 -17528378 - LTR30 LTR ERV1 -673 49 2 288 333 19 74 chrY 7184701 7184855 -17528224 + L1M3de LINE L1 473 613 -6040 1978 148 3 3 chrY 7184855 7185159 -17527920 - AluSx SINE Alu -8 304 1 288 333 19 74 chrY 7185159 7185220 -17527859 + L1M3de LINE L1 613 676 -5977 1305 234 40 64 chrY 7185494 7185917 -17527162 + MSTB LTR MaLR 1 413 -13 1607 203 0 13 chrY 7186125 7186436 -17526643 - AluY SINE Alu -3 308 2 602 350 61 34 chrY 7186524 7186967 -17526112 + L1M3b LINE L1 56 510 -5771 261 0 0 0 chrY 7187981 7188010 -17525069 + (CA)n Simple_repeat Simple_repeat 2 30 0 451 243 7 112 chrY 7188254 7188406 -17524673 + FLAM_C SINE Alu 2 137 -6 226 194 0 0 chrY 7189070 7189106 -17523973 + polypyrimidine Low_complexity Low_complexity 1 36 0 943 134 11 11 chrY 7189106 7189285 -17523794 + CT-rich Low_complexity Low_complexity 1 179 0 1415 237 0 17 chrY 7189311 7189602 -17523477 - AluSx SINE Alu -16 286 1 1238 248 3 3 chrY 7189642 7189953 -17523126 - AluSx SINE Alu -1 311 1 311 270 56 24 chrY 7190418 7190544 -17522535 - MLT1F LTR MaLR -27 515 386 573 15 0 0 chrY 7191373 7191439 -17521640 + (TCTA)n Simple_repeat Simple_repeat 1 66 0 27 62 0 0 chrY 7191445 7191493 -17521586 + AT_rich Low_complexity Low_complexity 1 48 0 25 0 0 0 chrY 7191761 7191786 -17521293 + AT_rich Low_complexity Low_complexity 1 25 0 24 32 0 0 chrY 7191975 7192006 -17521073 + AT_rich Low_complexity Low_complexity 1 31 0 308 267 22 22 chrY 7193391 7193481 -17519598 - L1MC4 LINE L1 -1339 6703 6614 252 235 0 0 chrY 7193482 7193533 -17519546 - MER4-int LTR ERV1 -5437 1161 1111 223 121 0 55 chrY 7193601 7193692 -17519387 + (TA)n Simple_repeat Simple_repeat 1 86 0 520 253 181 48 chrY 7193973 7194222 -17518857 + AluJo SINE Alu 11 292 -10 23 33 0 0 chrY 7194370 7194400 -17518679 + AT_rich Low_complexity Low_complexity 1 30 0 249 286 91 0 chrY 7195155 7195232 -17517847 + LTR33A LTR ERVL 102 185 -338 636 165 8 25 chrY 7195397 7195518 -17517561 + LTR1 LTR ERV1 1 119 -666 2329 190 35 53 chrY 7195523 7196127 -17516952 + LTR1 LTR ERV1 89 681 -104 225 319 79 75 chrY 7197016 7197521 -17515558 + SST1 Satellite centromeric 94 600 -963 180 167 0 0 chrY 7198422 7198470 -17514609 + (TG)n Simple_repeat Simple_repeat 1 48 0 497 304 66 33 chrY 7199500 7199895 -17513184 + SST1 Satellite centromeric 117 524 -1039 273 29 0 0 chrY 7200618 7200652 -17512427 + (TG)n Simple_repeat Simple_repeat 2 35 0 28 0 0 0 chrY 7200916 7200944 -17512135 + AT_rich Low_complexity Low_complexity 1 28 0 381 331 50 41 chrY 7201494 7201953 -17511126 + SST1 Satellite centromeric 139 601 -962 350 300 74 74 chrY 7202761 7203151 -17509928 + SST1 Satellite centromeric 1163 1552 -11 342 276 58 46 chrY 7205893 7206067 -17507012 + SST1 Satellite centromeric 349 524 -1039 230 326 11 11 chrY 7206624 7206716 -17506363 + SST1 Satellite centromeric 1148 1239 -324 185 83 28 0 chrY 7207077 7207113 -17505966 + (TG)n Simple_repeat Simple_repeat 1 37 0 283 317 50 50 chrY 7208201 7208599 -17504480 + SST1 Satellite centromeric 207 604 -959 310 309 77 77 chrY 7209077 7209482 -17503597 + SST1 Satellite centromeric 1148 1552 -11 339 149 0 0 chrY 7209506 7209580 -17503499 + (TG)n Simple_repeat Simple_repeat 1 74 0 33 25 0 0 chrY 7210422 7210462 -17502617 + AT_rich Low_complexity Low_complexity 1 40 0 6451 25 0 0 chrY 7210527 7211263 -17501816 - L1PA2 LINE L1 -8 6147 5412 222 62 0 0 chrY 7211429 7211461 -17501618 + (TG)n Simple_repeat Simple_repeat 1 32 0 195 42 0 0 chrY 7211584 7211608 -17501471 + (TTTC)n Simple_repeat Simple_repeat 2 25 0 195 42 0 0 chrY 7211679 7211703 -17501376 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 289 292 78 41 chrY 7212075 7212318 -17500761 + SST1 Satellite centromeric 29 280 -1283 245 290 103 19 chrY 7213347 7213502 -17499577 + SST1 Satellite centromeric 1385 1552 -11 180 97 0 0 chrY 7213526 7213557 -17499522 + (TG)n Simple_repeat Simple_repeat 2 32 0 362 295 80 66 chrY 7214571 7215083 -17497996 + SST1 Satellite centromeric 83 601 -962 542 306 66 46 chrY 7216971 7217425 -17495654 + SST1 Satellite centromeric 138 600 -963 230 287 85 60 chrY 7219380 7219697 -17493382 + SST1 Satellite centromeric 137 461 -1102 277 283 97 48 chrY 7220535 7220680 -17492399 + SST1 Satellite centromeric 1387 1538 -25 247 250 22 0 chrY 7220683 7220775 -17492304 + (TG)n Simple_repeat Simple_repeat 1 94 0 232 303 92 60 chrY 7221823 7222074 -17491005 + SST1 Satellite centromeric 138 396 -1167 263 319 60 57 chrY 7223350 7223598 -17489481 + SST1 Satellite centromeric 352 600 -963 285 214 20 10 chrY 7224442 7224540 -17488539 + (TG)n Simple_repeat Simple_repeat 2 100 0 186 71 0 0 chrY 7224764 7224792 -17488287 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 374 296 68 52 chrY 7225280 7225530 -17487549 + SST1 Satellite centromeric 349 602 -961 234 107 27 53 chrY 7226395 7226470 -17486609 + (TG)n Simple_repeat Simple_repeat 1 73 0 266 354 51 38 chrY 7227416 7227945 -17485134 + SST1 Satellite centromeric 66 601 -962 318 26 0 0 chrY 7228874 7228913 -17484166 + (TG)n Simple_repeat Simple_repeat 1 39 0 227 338 0 0 chrY 7230880 7230957 -17482122 + SST1 Satellite centromeric 1148 1224 -339 195 42 0 0 chrY 7233699 7233723 -17479356 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 203 111 0 74 chrY 7233892 7233946 -17479133 + (TG)n Simple_repeat Simple_repeat 1 50 0 262 282 32 40 chrY 7234987 7235111 -17477968 + SST1 Satellite centromeric 138 260 -1303 231 284 14 14 chrY 7235894 7235968 -17477111 + SST1 Satellite centromeric 1156 1229 -334 180 179 0 0 chrY 7236345 7236384 -17476695 + (TG)n Simple_repeat Simple_repeat 1 39 0 1542 40 0 0 chrY 7237926 7238127 -17474952 - L1PA4 LINE L1 -2962 3184 2984 17734 46 6 1 chrY 7238127 7241085 -17471994 + L1PA4 LINE L1 3189 6154 -1 294 87 0 0 chrY 7241247 7241293 -17471786 + (TG)n Simple_repeat Simple_repeat 1 46 0 267 307 93 85 chrY 7243223 7243601 -17469478 + SST1 Satellite centromeric 1156 1536 -27 196 161 32 0 chrY 7243640 7243702 -17469377 + (TG)n Simple_repeat Simple_repeat 1 64 0 215 100 50 0 chrY 7243909 7243949 -17469130 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 381 306 50 71 chrY 7244799 7245181 -17467898 + SST1 Satellite centromeric 227 600 -963 249 98 0 0 chrY 7246389 7246430 -17466649 + (A)n Simple_repeat Simple_repeat 1 41 0 340 314 64 54 chrY 7247301 7247693 -17465386 + SST1 Satellite centromeric 207 602 -961 234 143 0 0 chrY 7248610 7248659 -17464420 + (TG)n Simple_repeat Simple_repeat 2 50 0 250 244 22 0 chrY 7250249 7250339 -17462740 + (TG)n Simple_repeat Simple_repeat 1 92 0 381 319 55 40 chrY 7251446 7251775 -17461304 + SST1 Satellite centromeric 191 524 -1039 214 256 26 0 chrY 7252724 7252802 -17460277 + (TG)n Simple_repeat Simple_repeat 1 80 0 255 266 56 56 chrY 7253775 7253918 -17459161 + SST1 Satellite centromeric 138 280 -1283 268 234 21 0 chrY 7255016 7255110 -17457969 + (TG)n Simple_repeat Simple_repeat 1 96 0 234 272 47 70 chrY 7256338 7256551 -17456528 + SST1 Satellite centromeric 317 524 -1039 207 114 0 0 chrY 7257411 7257446 -17455633 + (TG)n Simple_repeat Simple_repeat 2 36 0 237 298 32 40 chrY 7258483 7258607 -17454472 + SST1 Satellite centromeric 138 260 -1303 284 268 14 0 chrY 7259419 7259490 -17453589 + SST1 Satellite centromeric 1156 1227 -336 2094 143 0 0 chrY 7264089 7264389 -17448690 - AluY SINE Alu -11 300 1 252 154 0 0 chrY 7265852 7265904 -17447175 + (TG)n Simple_repeat Simple_repeat 1 52 0 443 300 73 53 chrY 7266877 7267400 -17445679 + SST1 Satellite centromeric 66 598 -965 309 328 58 31 chrY 7269447 7269969 -17443110 + SST1 Satellite centromeric 66 601 -962 183 80 0 0 chrY 7272035 7272060 -17441019 + (T)n Simple_repeat Simple_repeat 1 25 0 299 328 48 40 chrY 7273244 7273619 -17439460 + SST1 Satellite centromeric 223 600 -963 202 146 18 18 chrY 7274526 7274581 -17438498 + (TG)n Simple_repeat Simple_repeat 2 56 0 180 77 0 0 chrY 7274698 7274724 -17438355 + (TG)n Simple_repeat Simple_repeat 1 26 0 198 0 0 0 chrY 7277096 7277118 -17435961 + (TG)n Simple_repeat Simple_repeat 1 22 0 238 330 0 0 chrY 7278970 7279064 -17434015 + SST1 Satellite centromeric 1146 1239 -324 231 61 0 0 chrY 7279423 7279456 -17433623 + (TG)n Simple_repeat Simple_repeat 2 34 0 921 256 3 36 chrY 7281742 7282103 -17430976 - LTR2 LTR ERV1 0 449 1 737 210 156 0 chrY 7282103 7282270 -17430809 - Harlequin LTR ERV1 -1 6895 6703 577 285 0 0 chrY 7282265 7282388 -17430691 - Harlequin LTR ERV1 -1307 5589 5467 * 3665 211 21 3 chrY 7282396 7283889 -17429190 - HERVE LTR ERV1 -1814 5999 4386 * 9468 182 31 21 chrY 7283888 7286197 -17426882 - HERVE LTR ERV1 -3719 4094 1684 182 279 139 0 chrY 7288102 7288181 -17424898 - L3 LINE CR1 -91 1486 1397 233 100 0 67 chrY 7289219 7289279 -17423800 + (TG)n Simple_repeat Simple_repeat 1 56 0 216 158 0 0 chrY 7289484 7289522 -17423557 + A-rich Low_complexity Low_complexity 1 38 0 200 189 40 14 chrY 7291698 7291772 -17421307 + (TG)n Simple_repeat Simple_repeat 2 77 0 2172 32 0 7 chrY 7292005 7292283 -17420796 - L1P LINE L1 -891 5255 4978 3644 68 2 4 chrY 7292283 7292417 -17420662 + L1PA3 LINE L1 5686 5819 -336 2285 85 0 10 chrY 7292417 7292710 -17420369 + AluY SINE Alu 9 298 -13 3644 68 2 4 chrY 7292710 7293045 -17420034 + L1PA3 LINE L1 5819 6155 0 22 0 0 0 chrY 7293325 7293347 -17419732 + AT_rich Low_complexity Low_complexity 1 22 0 254 60 0 80 chrY 7295253 7295303 -17417776 + (TG)n Simple_repeat Simple_repeat 2 47 0 229 286 13 13 chrY 7296064 7296141 -17416938 + SST1 Satellite centromeric 1163 1239 -324 225 250 0 0 chrY 7296474 7296534 -17416545 + (TG)n Simple_repeat Simple_repeat 1 60 0 23 0 0 0 chrY 7297043 7297066 -17416013 + AT_rich Low_complexity Low_complexity 1 23 0 225 164 33 16 chrY 7298588 7298649 -17414430 + (TG)n Simple_repeat Simple_repeat 1 62 0 231 315 0 14 chrY 7300635 7300708 -17412371 + SST1 Satellite centromeric 1156 1227 -336 208 184 20 20 chrY 7301052 7301101 -17411978 + (TG)n Simple_repeat Simple_repeat 2 50 0 243 247 25 0 chrY 7303471 7303552 -17409527 + (TG)n Simple_repeat Simple_repeat 1 83 0 234 0 0 0 chrY 7303761 7303787 -17409292 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 251 315 56 48 chrY 7304849 7305100 -17407979 + SST1 Satellite centromeric 349 601 -962 271 77 15 62 chrY 7305970 7306035 -17407044 + (TG)n Simple_repeat Simple_repeat 1 62 0 319 316 87 62 chrY 7307029 7307548 -17405531 + SST1 Satellite centromeric 63 594 -969 241 333 0 10 chrY 7308014 7308113 -17404966 + SST1 Satellite centromeric 1132 1229 -334 299 293 90 18 chrY 7308268 7308435 -17404644 + SST1 Satellite centromeric 1374 1552 -11 387 83 0 0 chrY 7308459 7308519 -17404560 + (TG)n Simple_repeat Simple_repeat 1 60 0 225 327 57 33 chrY 7309499 7309710 -17403369 + SST1 Satellite centromeric 63 278 -1285 456 19 0 0 chrY 7310276 7310329 -17402750 + (TG)n Simple_repeat Simple_repeat 2 54 0 191 48 0 95 chrY 7311620 7311662 -17401417 + (TG)n Simple_repeat Simple_repeat 1 38 0 252 244 23 0 chrY 7312437 7312523 -17400556 + (TG)n Simple_repeat Simple_repeat 1 88 0 239 260 14 0 chrY 7313643 7313716 -17399363 + SST1 Satellite centromeric 207 280 -1283 196 85 0 85 chrY 7314929 7314988 -17398091 + (TG)n Simple_repeat Simple_repeat 1 54 0 186 43 0 0 chrY 7315037 7315060 -17398019 + (T)n Simple_repeat Simple_repeat 1 23 0 245 29 29 0 chrY 7315225 7315259 -17397820 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 208 156 62 0 chrY 7316737 7316801 -17396278 + (CA)n Simple_repeat Simple_repeat 2 69 0 182 39 0 0 chrY 7318451 7318477 -17394602 - L2 LINE L2 -4 3309 3284 34 24 0 0 chrY 7318859 7318900 -17394179 + AT_rich Low_complexity Low_complexity 1 41 0 25 31 0 0 chrY 7319023 7319055 -17394024 + AT_rich Low_complexity Low_complexity 1 32 0 350 271 12 12 chrY 7319061 7319146 -17393933 - FRAM SINE Alu -13 153 69 462 254 18 9 chrY 7319207 7319317 -17393762 - FLAM_C SINE Alu -22 121 11 24 32 0 0 chrY 7320984 7321015 -17392064 + AT_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chrY 7321202 7321226 -17391853 + AT_rich Low_complexity Low_complexity 1 24 0 275 108 14 40 chrY 7321493 7321567 -17391512 + (TA)n Simple_repeat Simple_repeat 1 72 0 312 278 56 24 chrY 7322396 7322522 -17390557 + MLT1F LTR MaLR 386 515 -27 1351 252 3 3 chrY 7322989 7323291 -17389788 + AluSx SINE Alu 1 302 0 1259 227 0 31 chrY 7323344 7323635 -17389444 + AluSx SINE Alu 5 286 -26 1208 81 6 0 chrY 7323661 7323835 -17389244 + (GAAA)n Simple_repeat Simple_repeat 1 175 0 32 26 0 0 chrY 7323939 7323978 -17389101 + AT_rich Low_complexity Low_complexity 1 39 0 361 318 105 7 chrY 7324519 7324671 -17388408 - AluJ/FLAM SINE Alu -215 87 1 247 241 9 71 chrY 7324990 7325102 -17387977 - L1P LINE L1 -2579 3567 3463 883 325 47 29 chrY 7325945 7326394 -17386685 - L1M3b LINE L1 -5771 510 54 1627 189 0 30 chrY 7326502 7326803 -17386276 + AluY SINE Alu 2 293 -18 1407 215 89 54 chrY 7327009 7327414 -17385665 - MSTB LTR MaLR -4 422 4 227 327 39 88 chrY 7327692 7327753 -17385326 - L1M3de LINE L1 -5977 676 614 1698 185 30 3 chrY 7327753 7328051 -17385028 + AluSx SINE Alu 1 306 -6 227 327 39 88 chrY 7328051 7328194 -17384885 - L1M3de LINE L1 -6039 614 482 3615 120 173 40 chrY 7328204 7328811 -17384268 + LTR12 LTR ERV1 1 688 0 13229 140 16 15 chrY 7328811 7331862 -17381217 + HERV9 LTR ERV1 1 3139 -5260 5464 151 3 16 chrY 7331869 7332775 -17380304 + HERV9 LTR ERV1 4080 4974 -3425 2242 199 99 62 chrY 7332742 7333592 -17379487 + HERV9 LTR ERV1 840 1720 -5176 * 3957 145 8 2 chrY 7333587 7334201 -17378878 + HERV9 LTR ERV1 7757 8374 -25 2945 129 197 69 chrY 7334208 7334818 -17378261 + LTR12 LTR ERV1 1 688 0 1137 292 10 17 chrY 7334822 7335120 -17377959 + AluJo SINE Alu 2 297 -5 30 27 0 0 chrY 7335148 7335185 -17377894 + AT_rich Low_complexity Low_complexity 1 37 0 1249 229 3 50 chrY 7335185 7335482 -17377597 - AluSx SINE Alu -17 285 3 1312 135 5 0 chrY 7335781 7336000 -17377079 + AluSp SINE Alu 99 318 0 2041 152 3 0 chrY 7336051 7336354 -17376725 + AluSx SINE Alu 1 304 -8 261 301 37 68 chrY 7336481 7336644 -17376435 - L1M3de LINE L1 -5214 1439 1282 529 247 34 31 chrY 7337002 7337175 -17375904 + L1MA4 LINE L1 6000 6174 -126 1333 232 0 29 chrY 7337175 7337485 -17375594 + AluJo SINE Alu 2 302 -10 529 247 34 31 chrY 7337485 7337533 -17375546 + L1MA4 LINE L1 6174 6220 -80 1165 205 4 17 chrY 7337543 7337777 -17375302 - AluSx SINE Alu -26 286 56 22 35 0 0 chrY 7339078 7339107 -17373972 + AT_rich Low_complexity Low_complexity 1 29 0 649 243 27 49 chrY 7339470 7339780 -17373299 + L1M4 LINE L1 5254 5555 -614 743 196 178 18 chrY 7339978 7340339 -17372740 + L1MB5 LINE L1 5254 5746 -428 973 257 70 15 chrY 7340364 7340691 -17372388 + L1MB5 LINE L1 5817 6161 -13 183 80 0 0 chrY 7340715 7340740 -17372339 + (T)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chrY 7342018 7342039 -17371040 + AT_rich Low_complexity Low_complexity 1 21 0 947 290 28 21 chrY 7342153 7342439 -17370640 + AluJo SINE Alu 1 288 -14 25 31 0 0 chrY 7343548 7343580 -17369499 + AT_rich Low_complexity Low_complexity 1 32 0 783 239 0 0 chrY 7343853 7344008 -17369071 - AluSg/x SINE Alu -17 295 141 304 179 14 21 chrY 7344010 7344155 -17368924 + (TA)n Simple_repeat Simple_repeat 2 145 0 480 200 10 21 chrY 7344193 7344726 -17368353 + (TA)n Simple_repeat Simple_repeat 1 538 -3073 18625 42 5 0 chrY 7344726 7347655 -17365424 - L1PA3 LINE L1 -3 6152 3213 480 200 10 21 chrY 7347655 7347844 -17365235 + (TA)n Simple_repeat Simple_repeat 538 3611 0 276 291 29 0 chrY 7347887 7348059 -17365020 + (TA)n Simple_repeat Simple_repeat 2 178 0 14155 49 1 1 chrY 7348570 7350328 -17362751 - L1PA3 LINE L1 -2961 3185 1427 17836 47 2 0 chrY 7350330 7353290 -17359789 + L1PA3 LINE L1 3188 6155 0 283 392 17 0 chrY 7353830 7353950 -17359129 - L2 LINE L2 -271 3042 2921 250 229 29 29 chrY 7354506 7354611 -17358468 + (TATATG)n Simple_repeat Simple_repeat 3 107 0 5884 113 18 6 chrY 7354611 7355523 -17357556 - L1PA7 LINE L1 -4 6150 5232 10579 134 11 11 chrY 7355536 7357441 -17355638 - L1PA7 LINE L1 -1538 4608 2705 286 232 61 12 chrY 7357888 7358052 -17355027 + (TA)n Simple_repeat Simple_repeat 2 173 0 28 48 0 0 chrY 7366037 7366079 -17347000 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chrY 7366205 7366226 -17346853 + AT_rich Low_complexity Low_complexity 1 21 0 324 0 0 0 chrY 7366533 7366569 -17346510 + (TG)n Simple_repeat Simple_repeat 1 36 0 811 249 124 0 chrY 7366606 7366807 -17346272 - AluJb SINE Alu -30 282 57 1157 260 40 0 chrY 7369590 7369704 -17343375 + AluJo SINE Alu 8 116 -196 207 0 0 0 chrY 7369704 7369727 -17343352 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1157 260 40 0 chrY 7369727 7369885 -17343194 + AluJo SINE Alu 116 291 -21 1814 170 20 0 chrY 7369896 7370190 -17342889 + AluSx SINE Alu 6 305 -7 1757 183 0 3 chrY 7371970 7372254 -17340825 + AluSx SINE Alu 3 287 -25 351 0 0 0 chrY 7372254 7372293 -17340786 + (CA)n Simple_repeat Simple_repeat 2 40 0 1757 183 0 3 chrY 7372293 7372309 -17340770 + AluSx SINE Alu 287 302 -10 309 310 112 71 chrY 7375603 7375968 -17337111 + L1M2 LINE L1 758 1137 -5712 1115 169 22 13 chrY 7378137 7378368 -17334711 + LTR1 LTR ERV1 1 233 -552 * 1793 185 36 74 chrY 7378346 7378951 -17334128 + LTR1 LTR ERV1 113 694 -91 466 225 0 42 chrY 7379320 7379440 -17333639 - MER41E LTR ERV1 -397 115 1 21 0 0 0 chrY 7380270 7380291 -17332788 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chrY 7381404 7381432 -17331647 + AT_rich Low_complexity Low_complexity 1 28 0 227 296 99 0 chrY 7382350 7382431 -17330648 - MIR SINE MIR -122 140 52 823 287 10 0 chrY 7382431 7382626 -17330453 - MIR SINE MIR -65 197 1 390 21 0 0 chrY 7382712 7382759 -17330320 + (CA)n Simple_repeat Simple_repeat 1 47 0 816 327 80 35 chrY 7383401 7383998 -17329081 + L2 LINE L2 1173 1796 -1518 938 218 38 85 chrY 7384002 7384150 -17328929 + AluSg SINE Alu 9 136 -174 8709 57 4 0 chrY 7384150 7386055 -17327024 - L1PA4 LINE L1 -1 6154 4244 938 218 38 85 chrY 7386055 7386223 -17326856 + AluSg SINE Alu 136 310 0 541 272 193 23 chrY 7386223 7386524 -17326555 + L2 LINE L2 1786 2137 -1177 35265 70 15 1 chrY 7386850 7391769 -17321310 + L1PA4 LINE L1 1 4990 -1156 1135 39 0 0 chrY 7391769 7391899 -17321180 + AluYa5/8 SINE Alu 166 295 -16 7285 38 6 0 chrY 7391899 7393065 -17320014 + L1PA4 LINE L1 4980 6150 -5 2039 124 7 7 chrY 7394363 7394645 -17318434 + AluSp SINE Alu 1 285 -28 267 31 0 0 chrY 7394645 7394677 -17318402 + (CA)n Simple_repeat Simple_repeat 1 32 0 610 247 165 28 chrY 7394763 7395054 -17318025 - Charlie2 DNA MER1_type -671 2191 1861 720 281 56 14 chrY 7395082 7395401 -17317678 - MER93b LTR ERV1 -2 371 62 192 311 16 0 chrY 7395937 7395998 -17317081 - L2 LINE L2 -6 3307 3246 24 32 0 0 chrY 7397375 7397406 -17315673 + AT_rich Low_complexity Low_complexity 1 31 0 453 333 124 13 chrY 7397766 7398138 -17314941 + L2 LINE L2 1592 2004 -1310 367 302 7 60 chrY 7398363 7398512 -17314567 + L2 LINE L2 3171 3311 -2 180 346 61 33 chrY 7398657 7398871 -17314208 + L2 LINE L2 2513 2732 -582 237 320 112 8 chrY 7399051 7399176 -17313903 + L2 LINE L2 3172 3309 -4 213 94 0 0 chrY 7399676 7399708 -17313371 + (TG)n Simple_repeat Simple_repeat 1 32 0 330 233 0 0 chrY 7399730 7399816 -17313263 + (TA)n Simple_repeat Simple_repeat 2 87 0 222 118 0 0 chrY 7399847 7399881 -17313198 + (TG)n Simple_repeat Simple_repeat 2 35 0 1184 140 6 0 chrY 7400036 7400215 -17312864 - AluSp SINE Alu -11 302 123 1613 180 10 27 chrY 7400218 7400518 -17312561 - AluSq SINE Alu -18 295 1 275 307 21 74 chrY 7400519 7400708 -17312371 + L2 LINE L2 2831 3009 -263 1688 141 33 49 chrY 7400989 7401294 -17311785 - AluY SINE Alu 0 311 12 222 211 132 26 chrY 7401335 7401411 -17311668 + L2 LINE L2 3139 3222 -50 1664 296 43 33 chrY 7401690 7401979 -17311100 + HAL1 LINE L1 1217 1502 -1005 2050 115 3 62 chrY 7401979 7402301 -17310778 + AluSp SINE Alu 1 303 -10 1664 296 43 33 chrY 7402301 7402832 -17310247 + HAL1 LINE L1 1502 2045 -462 250 315 153 11 chrY 7402825 7403301 -17309778 + L1M4 LINE L1 2860 3403 -2743 * 186 204 26 0 chrY 7403315 7403428 -17309651 + (TA)n Simple_repeat Simple_repeat 1 116 0 309 266 49 49 chrY 7403568 7403711 -17309368 + L1MA8 LINE L1 3594 3736 -2410 2622 116 6 0 chrY 7404196 7404549 -17308530 + THE1A LTR MaLR 1 355 0 1541 137 68 30 chrY 7404691 7404954 -17308125 - AluSx SINE Alu -39 273 1 1820 199 0 0 chrY 7404994 7405306 -17307773 - AluSx SINE Alu 0 312 1 28 48 0 0 chrY 7406496 7406538 -17306541 + AT_rich Low_complexity Low_complexity 1 42 0 2956 252 52 41 chrY 7408857 7409733 -17303346 + L1MA8 LINE L1 4559 5424 -867 207 0 0 0 chrY 7409733 7409756 -17303323 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2956 252 52 41 chrY 7409756 7410600 -17302479 + L1MA8 LINE L1 5424 6291 0 297 0 0 0 chrY 7410740 7410773 -17302306 + (CA)n Simple_repeat Simple_repeat 2 34 0 387 330 100 33 chrY 7410814 7410918 -17302161 + L1M4c LINE L1 1046 1142 -5242 999 218 40 44 chrY 7410918 7411216 -17301863 + AluJo SINE Alu 2 298 -4 387 330 100 33 chrY 7411216 7411411 -17301668 + L1M4c LINE L1 1142 1365 -5019 219 88 0 0 chrY 7411951 7411985 -17301094 + (T)n Simple_repeat Simple_repeat 1 34 0 222 117 0 50 chrY 7412196 7412256 -17300823 + (GGAA)n Simple_repeat Simple_repeat 1 57 0 360 296 110 86 chrY 7414779 7415289 -17297790 + L1M2 LINE L1 906 1427 -5422 1500 177 54 0 chrY 7419526 7419803 -17293276 - AluSg SINE Alu -18 292 1 21 57 0 0 chrY 7419856 7419891 -17293188 + AT_rich Low_complexity Low_complexity 1 35 0 1880 160 3 0 chrY 7421515 7421803 -17291276 - AluSx SINE Alu -18 294 6 1183 244 3 7 chrY 7421815 7422098 -17290981 - AluJo SINE Alu -23 289 8 2169 108 0 10 chrY 7423361 7423667 -17289412 - AluY SINE Alu -8 303 1 860 241 123 5 chrY 7426144 7426347 -17286732 + AluJb SINE Alu 56 282 -30 216 97 0 0 chrY 7426860 7426891 -17286188 + (TA)n Simple_repeat Simple_repeat 2 32 0 4839 133 4 19 chrY 7430188 7430886 -17282193 - LTR12 LTR ERV1 0 688 1 2297 94 7 7 chrY 7433402 7433711 -17279368 + AluY SINE Alu 1 309 -2 528 122 0 0 chrY 7433713 7433795 -17279284 + (GGAA)n Simple_repeat Simple_repeat 3 84 0 221 216 26 43 chrY 7434458 7434574 -17278505 + (CATATA)n Simple_repeat Simple_repeat 1 114 0 23 54 0 0 chrY 7434632 7434669 -17278410 + AT_rich Low_complexity Low_complexity 1 37 0 17744 117 17 2 chrY 7435079 7438515 -17274564 + L1PA7 LINE L1 2707 6154 0 365 247 40 11 chrY 7438515 7438689 -17274390 + (TA)n Simple_repeat Simple_repeat 2 180 0 23 78 0 0 chrY 7438708 7438759 -17274320 + AT_rich Low_complexity Low_complexity 1 51 0 244 337 167 16 chrY 7439241 7439499 -17273580 + L2 LINE L2 2921 3217 -96 1260 161 5 13 chrY 7440433 7440657 -17272422 - AluSg/x SINE Alu -7 305 84 1332 219 25 7 chrY 7440672 7440955 -17272124 + AluJb SINE Alu 1 288 -24 1323 223 49 0 chrY 7441319 7441606 -17271473 - AluJo SINE Alu -4 308 8 33 35 0 17 chrY 7442695 7442713 -17270366 + AT_rich Low_complexity Low_complexity 1 18 -39 1227 198 13 76 chrY 7442713 7443016 -17270063 + AluSx SINE Alu 1 284 -28 33 35 0 17 chrY 7443016 7443055 -17270024 + AT_rich Low_complexity Low_complexity 18 57 0 1198 235 14 31 chrY 7443279 7443573 -17269506 - AluJb SINE Alu -13 299 11 698 216 0 0 chrY 7443603 7443719 -17269360 - FLAM_C SINE Alu -14 119 4 1100 60 18 12 chrY 7443736 7443903 -17269176 + (TTTC)n Simple_repeat Simple_repeat 2 169 0 263 250 171 0 chrY 7444050 7444126 -17268953 - AluJo/FRAM SINE Alu -45 257 169 1466 218 0 7 chrY 7444126 7444411 -17268668 - AluJb SINE Alu -29 283 1 1771 178 3 3 chrY 7445400 7445703 -17267376 - AluSx SINE Alu -9 303 1 22 70 0 0 chrY 7445796 7445839 -17267240 + AT_rich Low_complexity Low_complexity 1 43 0 25 0 0 0 chrY 7446160 7446185 -17266894 + AT_rich Low_complexity Low_complexity 1 25 0 1962 147 3 6 chrY 7446416 7446728 -17266351 - AluSx SINE Alu -1 311 1 817 209 55 0 chrY 7446740 7446922 -17266157 + AluJo SINE Alu 120 311 -1 201 74 0 0 chrY 7446922 7446949 -17266130 + (GGAA)n Simple_repeat Simple_repeat 2 28 0 1411 202 10 7 chrY 7447111 7447403 -17265676 - AluSx SINE Alu -9 303 11 21 36 0 0 chrY 7447730 7447758 -17265321 + AT_rich Low_complexity Low_complexity 1 28 0 211 302 166 12 chrY 7447837 7448006 -17265073 - MIR SINE MIR -11 251 57 29182 31 15 1 chrY 7448125 7454146 -17258933 + L1HS LINE L1 3 6153 -2 255 111 0 0 chrY 7454157 7454193 -17258886 - L1M4 LINE L1 -1598 4548 4513 407 295 0 0 chrY 7457211 7457316 -17255763 + FLAM_C SINE Alu 6 110 -33 383 119 17 0 chrY 7457328 7457387 -17255692 - MER1B DNA MER1_type -13 326 267 1063 209 81 16 chrY 7457541 7457799 -17255280 - MER1B DNA MER1_type -64 275 1 673 225 42 51 chrY 7457908 7458144 -17254935 + AluJb SINE Alu 1 234 -78 22 56 0 0 chrY 7458205 7458241 -17254838 + AT_rich Low_complexity Low_complexity 1 36 0 495 48 0 0 chrY 7458661 7458723 -17254356 + (TG)n Simple_repeat Simple_repeat 2 63 0 22 94 0 0 chrY 7458784 7458848 -17254231 + AT_rich Low_complexity Low_complexity 1 64 0 1509 142 12 24 chrY 7462698 7462951 -17250128 - AluSc SINE Alu -45 264 15 963 263 27 44 chrY 7463118 7463415 -17249664 - AluJo SINE Alu -10 292 1 27 0 0 0 chrY 7463522 7463549 -17249530 + AT_rich Low_complexity Low_complexity 1 27 0 2007 230 147 21 chrY 7464589 7465349 -17247730 - L1MB5 LINE L1 -13 6161 5306 796 119 21 21 chrY 7466436 7466579 -17246500 + AluSp/q SINE Alu 171 313 0 1405 201 29 7 chrY 7467449 7467727 -17245352 - AluSg SINE Alu -12 298 15 1380 213 17 3 chrY 7468244 7468544 -17244535 + AluJb SINE Alu 3 306 -6 234 0 0 0 chrY 7468583 7468609 -17244470 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 43446 46 2 1 chrY 7468609 7474745 -17238334 - L1PA3 LINE L1 -6 6149 9 639 266 49 73 chrY 7475005 7475136 -17237943 - MLT1A1 LTR MaLR -14 351 218 1761 145 48 3 chrY 7475136 7475426 -17237653 - AluSc SINE Alu -6 303 1 639 266 49 73 chrY 7475426 7475580 -17237499 - MLT1A1 LTR MaLR -147 218 73 467 323 13 42 chrY 7475580 7475890 -17237189 - MER31-int LTR ERV1 -261 4675 4375 377 233 22 0 chrY 7475987 7476077 -17237002 - MER31-int LTR ERV1 -721 4215 4124 425 189 24 0 chrY 7476077 7476246 -17236833 + (TA)n Simple_repeat Simple_repeat 2 174 0 60 27 0 0 chrY 7476246 7476320 -17236759 + AT_rich Low_complexity Low_complexity 1 74 0 1071 206 0 83 chrY 7476333 7476586 -17236493 - AluJb SINE Alu -80 232 1 1137 256 40 47 chrY 7476614 7477043 -17236036 - MER31-int LTR ERV1 -835 4101 3676 1475 177 0 90 chrY 7477130 7477464 -17235615 - AluSx SINE Alu -8 304 1 1973 240 77 40 chrY 7477525 7478547 -17234532 - MER31-int LTR ERV1 -3570 1366 287 351 227 0 41 chrY 7478561 7478658 -17234421 + (CAGAGA)n Simple_repeat Simple_repeat 2 94 0 558 226 16 0 chrY 7479884 7480008 -17233071 + L1M2 LINE L1 13 138 -6711 3227 109 21 0 chrY 7480019 7480828 -17232251 + L1P2 LINE L1 4918 5745 -409 38950 157 5 5 chrY 7480832 7487569 -17225510 + HERVK22 LTR ERVK 52 6835 -2 2963 188 23 3 chrY 7487570 7488139 -17224940 + LTR22 LTR ERVK 1 580 0 615 259 7 0 chrY 7488750 7488889 -17224190 + MLT1D LTR MaLR 301 440 -65 435 337 80 37 chrY 7489042 7489443 -17223636 - L2 LINE L2 -460 2854 2437 2061 118 0 10 chrY 7489828 7490162 -17222917 + AluSg1 SINE Alu 1 331 0 238 342 45 0 chrY 7490179 7490290 -17222789 + MIR SINE MIR 47 162 -100 33 56 0 0 chrY 7490901 7490955 -17222124 + AT_rich Low_complexity Low_complexity 1 54 0 1749 143 15 58 chrY 7491122 7491451 -17221628 - MER52C LTR ERV1 0 1278 964 2806 45 48 0 chrY 7491921 7492313 -17220766 + L1PA4 LINE L1 5774 6182 0 291 28 0 0 chrY 7492796 7492832 -17220247 + (TG)n Simple_repeat Simple_repeat 2 37 0 1390 113 0 16 chrY 7492832 7493026 -17220053 - AluSg/x SINE Alu -25 285 95 1851 169 10 0 chrY 7493149 7493450 -17219629 + AluSx SINE Alu 1 304 -8 5169 133 91 7 chrY 7493452 7494363 -17218716 + L1PA7 LINE L1 3598 4585 -1561 288 130 0 0 chrY 7494370 7494416 -17218663 + (CA)n Simple_repeat Simple_repeat 2 47 0 6037 107 8 1 chrY 7494418 7495751 -17217328 + L1PA7 LINE L1 4807 6146 -8 214 356 144 0 chrY 7496086 7496204 -17216875 - L2 LINE L2 -1 3271 3137 305 272 41 14 chrY 7496336 7496483 -17216596 + L1M4 LINE L1 4457 4607 -1539 1759 157 21 7 chrY 7497966 7498253 -17214826 - AluSx SINE Alu -21 291 1 187 317 50 30 chrY 7498545 7498646 -17214433 + L2 LINE L2 3204 3306 -7 812 309 94 42 chrY 7498917 7499341 -17213738 + MLT1J LTR MaLR 19 464 -47 57 61 0 0 chrY 7499629 7499728 -17213351 + AT_rich Low_complexity Low_complexity 1 99 0 211 274 0 0 chrY 7499787 7499849 -17213230 + (TATATG)n Simple_repeat Simple_repeat 2 63 0 242 65 0 0 chrY 7499978 7500009 -17213070 + THE1A LTR MaLR 325 355 0 2230 112 11 0 chrY 7500012 7500361 -17212718 + THE1A-int LTR MaLR 4 356 -1224 1380 158 26 0 chrY 7500368 7500633 -17212446 + LTR19B LTR ERV1 307 578 -2 3894 171 6 47 chrY 7500635 7501528 -17211551 + HERVFH19I LTR ERV1 1 921 -4665 1001 137 34 64 chrY 7501495 7501699 -17211380 + HERVFH19I LTR ERV1 1113 1310 -4276 * 3428 30 0 0 chrY 7501699 7502100 -17210979 + L1PA3 LINE L1 5750 6150 -5 1846 134 34 3 chrY 7502127 7502455 -17210624 + HERVFH19I LTR ERV1 1300 1637 -3949 1622 180 23 3 chrY 7502456 7502762 -17210317 + AluSp SINE Alu 1 312 -1 189 0 0 0 chrY 7503466 7503487 -17209592 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 432 286 24 8 chrY 7503827 7503953 -17209126 + MIR3 SINE MIR 66 193 -15 325 282 24 0 chrY 7504119 7504204 -17208875 - MIR SINE MIR -127 135 49 1055 194 26 77 chrY 7505082 7505433 -17207646 - MLT1B LTR MaLR -57 333 1 21 36 0 0 chrY 7505717 7505745 -17207334 + AT_rich Low_complexity Low_complexity 1 28 0 180 0 0 0 chrY 7506274 7506294 -17206785 + (T)n Simple_repeat Simple_repeat 1 20 0 227 267 17 17 chrY 7506713 7506773 -17206306 - MIR3 SINE MIR -54 154 95 28 29 0 0 chrY 7507305 7507340 -17205739 + AT_rich Low_complexity Low_complexity 1 35 0 1052 255 46 46 chrY 7508270 7508650 -17204429 + MLT1C LTR MaLR 36 418 -49 2136 118 0 0 chrY 7508650 7508954 -17204125 + AluY SINE Alu 1 304 -7 1052 255 46 46 chrY 7508954 7509005 -17204074 + MLT1C LTR MaLR 417 467 0 198 103 0 0 chrY 7509343 7509372 -17203707 + (ATG)n Simple_repeat Simple_repeat 2 30 0 413 376 24 10 chrY 7509652 7509857 -17203222 + L2 LINE L2 271 478 -2836 190 347 68 14 chrY 7509913 7510060 -17203019 + L2 LINE L2 639 793 -2521 1513 208 3 24 chrY 7510077 7510370 -17202709 - AluJo SINE Alu -19 293 7 997 262 23 30 chrY 7510540 7510845 -17202234 + MLT1E LTR MaLR 289 591 -2 23 0 0 0 chrY 7511582 7511605 -17201474 + AT_rich Low_complexity Low_complexity 1 23 0 290 45 23 0 chrY 7512571 7512615 -17200464 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 21 71 0 0 chrY 7513812 7513854 -17199225 + AT_rich Low_complexity Low_complexity 1 42 0 282 315 22 0 chrY 7514014 7514103 -17198976 - L2 LINE L2 0 3313 3223 225 0 0 0 chrY 7514671 7514696 -17198383 + (CA)n Simple_repeat Simple_repeat 2 26 0 801 236 0 22 chrY 7514697 7514875 -17198204 + FRAM SINE Alu 1 174 -2 1364 214 18 4 chrY 7514905 7515219 -17197860 - AluSx SINE Alu 0 318 1 1023 289 68 39 chrY 7515806 7516456 -17196623 + LTR65 LTR ERV1 1 669 0 252 0 0 0 chrY 7516675 7516703 -17196376 + (T)n Simple_repeat Simple_repeat 1 28 0 1248 210 70 3 chrY 7516703 7516989 -17196090 + AluSg SINE Alu 2 306 -4 307 314 164 48 chrY 7517383 7517762 -17195317 + L1MEc LINE L1 56 478 -5918 737 266 15 79 chrY 7517775 7518169 -17194910 - L1M2b LINE L1 -5277 1932 1564 1405 263 107 68 chrY 7518194 7518954 -17194125 - L1M2b LINE L1 -6420 789 1 1966 147 10 7 chrY 7518984 7519291 -17193788 - AluSx SINE Alu -4 308 1 1435 306 40 52 chrY 7519334 7520232 -17192847 - L1M3de LINE L1 -4600 2053 1167 341 238 56 24 chrY 7521039 7521165 -17191914 + MLT1F LTR MaLR 386 515 -27 1091 214 4 28 chrY 7521677 7521929 -17191150 + AluSx SINE Alu 58 303 -9 1371 206 14 31 chrY 7521976 7522267 -17190812 + AluSx SINE Alu 5 290 -22 821 144 29 0 chrY 7522300 7522473 -17190606 + GA-rich Low_complexity Low_complexity 3 180 0 351 211 0 0 chrY 7522489 7522579 -17190500 + GA-rich Low_complexity Low_complexity 2 91 0 23 33 0 0 chrY 7522650 7522680 -17190399 + AT_rich Low_complexity Low_complexity 1 30 0 384 284 52 3 chrY 7523207 7523337 -17189742 - AluJ/FLAM SINE Alu -215 87 1 255 294 11 22 chrY 7523478 7523570 -17189509 + MLT1E LTR MaLR 385 475 -118 824 347 20 32 chrY 7524636 7525082 -17187997 - L1M3de LINE L1 -5771 892 451 264 30 0 0 chrY 7525082 7525115 -17187964 + (TTG)n Simple_repeat Simple_repeat 2 34 0 824 347 20 32 chrY 7525115 7525172 -17187907 - L1M3de LINE L1 -6212 451 395 1688 185 0 14 chrY 7525207 7525516 -17187563 + AluSg SINE Alu 1 305 0 1528 201 37 62 chrY 7525716 7526153 -17186926 - MSTB LTR MaLR 0 426 1 2135 139 0 3 chrY 7526485 7526788 -17186291 + AluSx SINE Alu 1 302 -10 297 367 30 18 chrY 7526817 7527299 -17185780 - L1M3de LINE L1 -5214 1439 605 731 234 12 24 chrY 7527325 7527492 -17185587 + FRAM SINE Alu 1 165 -1 1362 229 3 14 chrY 7527554 7527842 -17185237 - AluSx SINE Alu -25 287 3 1486 197 31 3 chrY 7528306 7528595 -17184484 + AluSg SINE Alu 1 297 -13 1147 201 61 31 chrY 7530541 7530950 -17182129 + L1MB5 LINE L1 5306 5744 -439 1048 259 51 12 chrY 7530977 7531309 -17181770 + L1MB5 LINE L1 5817 6161 -13 27 0 0 0 chrY 7532674 7532701 -17180378 + AT_rich Low_complexity Low_complexity 1 27 0 800 296 19 23 chrY 7532809 7533069 -17180010 + AluJo SINE Alu 1 259 -53 1729 171 0 4 chrY 7534498 7534809 -17178270 - AluSg SINE Alu 0 310 1 22 35 0 0 chrY 7535759 7535788 -17177291 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chrY 7536033 7536054 -17177025 + AT_rich Low_complexity Low_complexity 1 21 0 1665 171 0 10 chrY 7536339 7536632 -17176447 - AluSg SINE Alu -20 290 1 1647 151 41 0 chrY 7538636 7538930 -17174149 + AluSc SINE Alu 1 305 0 2050 132 3 3 chrY 7539410 7539714 -17173365 - AluSc SINE Alu -5 304 1 22 70 0 0 chrY 7540981 7541024 -17172055 + AT_rich Low_complexity Low_complexity 1 43 0 278 207 0 0 chrY 7541341 7541399 -17171680 + Charlie3 DNA MER1_type 2636 2693 -17 503 250 0 0 chrY 7541411 7541519 -17171560 - FLAM_C SINE Alu -33 110 3 1791 166 14 0 chrY 7546520 7546534 -17166545 - AluSx SINE Alu -12 300 288 180 111 0 0 chrY 7546534 7546561 -17166518 + (TG)n Simple_repeat Simple_repeat 2 28 0 1791 166 14 0 chrY 7546561 7546842 -17166237 - AluSx SINE Alu -24 288 1 23 0 0 0 chrY 7546907 7546930 -17166149 + AT_rich Low_complexity Low_complexity 1 23 0 1973 134 0 7 chrY 7547136 7547419 -17165660 + AluSq SINE Alu 3 283 -30 381 315 118 45 chrY 7548143 7548432 -17164647 + L2 LINE L2 2196 2505 -809 261 0 0 0 chrY 7549522 7549551 -17163528 + (TG)n Simple_repeat Simple_repeat 2 30 0 * 284 47 47 31 chrY 7549548 7549612 -17163467 + (TTTTG)n Simple_repeat Simple_repeat 3 67 0 214 297 27 27 chrY 7549716 7549790 -17163289 - MER5A DNA MER1_type -73 116 43 335 292 34 56 chrY 7550143 7550410 -17162669 + L1M4 LINE L1 5257 5517 -661 22 0 0 0 chrY 7550531 7550553 -17162526 + AT_rich Low_complexity Low_complexity 1 22 0 524 218 82 0 chrY 7552505 7552615 -17160464 + MER41E LTR ERV1 1 119 -393 2912 169 35 56 chrY 7552971 7553681 -17159398 - LTR1 LTR ERV1 -90 695 1 250 208 42 0 chrY 7553851 7553899 -17159180 - LTR33A LTR ERVL -343 180 131 609 183 13 39 chrY 7554162 7554315 -17158764 - LTR7 LTR ERV1 0 450 302 774 134 92 14 chrY 7554359 7554517 -17158562 - LTR7 LTR ERV1 -232 218 1 3376 114 19 39 chrY 7554517 7555085 -17157994 - HERVH LTR ERV1 0 7713 7157 * 15583 156 7 30 chrY 7555080 7557802 -17155277 - HERVH LTR ERV1 -1699 6014 3357 12253 162 5 7 chrY 7557802 7559837 -17153242 - HERVH LTR ERV1 -4883 2830 800 1871 207 20 48 chrY 7559859 7560362 -17152717 - HERVH LTR ERV1 -7254 459 3 1208 203 197 29 chrY 7560364 7560749 -17152330 - LTR7 LTR ERV1 0 450 1 191 67 0 0 chrY 7560857 7560887 -17152192 - L2 LINE L2 0 3313 3284 1863 156 13 3 chrY 7561015 7561323 -17151756 - AluY SINE Alu 0 311 1 4600 94 7 0 chrY 7561648 7562231 -17150848 + LTR14C LTR ERVK 1 587 0 752 250 134 41 chrY 7562322 7562590 -17150489 - AluJo SINE Alu -1 311 19 21 0 0 0 chrY 7564934 7564955 -17148124 + AT_rich Low_complexity Low_complexity 1 21 0 2780 230 57 63 chrY 7566982 7568711 -17144368 + L1MA8 LINE L1 4558 6268 -23 25 40 0 20 chrY 7568717 7568732 -17144347 + AT_rich Low_complexity Low_complexity 1 15 -34 7376 71 1 1 chrY 7568732 7569746 -17143333 + L1PA5 LINE L1 5137 6150 -4 25 40 0 20 chrY 7569746 7569780 -17143299 + AT_rich Low_complexity Low_complexity 15 49 0 237 203 0 16 chrY 7569828 7569892 -17143187 + L1MC4 LINE L1 6647 6709 -1333 385 295 82 70 chrY 7569915 7570026 -17143053 + L1M4c LINE L1 1045 1153 -5231 1091 243 23 43 chrY 7570026 7570330 -17142749 + AluJb SINE Alu 5 302 0 385 295 82 70 chrY 7570330 7570533 -17142546 + L1M4c LINE L1 1153 1363 -5021 213 297 5 49 chrY 7571245 7571360 -17141719 + GA-rich Low_complexity Low_complexity 1 109 0 372 88 0 0 chrY 7573320 7573377 -17139702 + (CA)n Simple_repeat Simple_repeat 2 58 0 186 128 0 0 chrY 7575896 7575935 -17137144 + (CCA)n Simple_repeat Simple_repeat 1 39 0 1201 168 2 1 chrY 7577820 7590302 -17122777 - ALR/Alpha Satellite centromeric 0 12494 1 1145 159 1 1 chrY 7590314 7594814 -17118265 - ALR/Alpha Satellite centromeric 0 4502 1 873 114 0 0 chrY 7594814 7594937 -17118142 + L1P LINE L1 16 138 -6008 255 274 0 0 chrY 7595315 7595399 -17117680 + (CA)n Simple_repeat Simple_repeat 1 84 0 439 306 0 17 chrY 7595414 7595594 -17117485 + GA-rich Low_complexity Low_complexity 2 178 0 186 192 0 0 chrY 7596687 7596739 -17116340 + (CA)n Simple_repeat Simple_repeat 1 52 0 439 267 7 7 chrY 7596745 7596880 -17116199 + GA-rich Low_complexity Low_complexity 2 136 0 859 142 0 0 chrY 7597402 7597522 -17115557 - 5S rRNA rRNA 0 121 2 281 221 10 0 chrY 7598269 7598373 -17114706 + (CA)n Simple_repeat Simple_repeat 2 106 0 1817 184 83 34 chrY 7598380 7598847 -17114232 + LTR2B LTR ERV1 1 490 0 230 206 14 0 chrY 7598883 7598956 -17114123 + GA-rich Low_complexity Low_complexity 2 75 0 301 211 26 0 chrY 7598973 7599049 -17114030 + GA-rich Low_complexity Low_complexity 6 83 0 684 149 8 8 chrY 7599867 7599988 -17113091 - 5S rRNA rRNA 0 121 1 7700 157 28 82 chrY 7600378 7602242 -17110837 - L1M1 LINE L1 -4326 3239 1477 * 9770 207 25 4 chrY 7602239 7604508 -17108571 - L1P LINE L1 -815 5331 3016 232 264 0 0 chrY 7605450 7605522 -17107557 + MER103 DNA DNA 12 83 -83 285 267 0 50 chrY 7605560 7605680 -17107399 + L2 LINE L2 1971 2084 -1230 2360 206 25 4 chrY 7606811 7607325 -17105754 - L1PB4 LINE L1 -12 6144 5620 300 205 64 13 chrY 7607600 7607678 -17105401 + L2 LINE L2 3191 3272 0 2075 187 104 38 chrY 7607893 7608422 -17104657 + LTR6A LTR ERV1 1 564 0 205 267 0 0 chrY 7608965 7609010 -17104069 + L2 LINE L2 3261 3305 -8 259 243 171 0 chrY 7609131 7609201 -17103878 + L2 LINE L2 3230 3311 -2 22 56 0 0 chrY 7609963 7609999 -17103080 + AT_rich Low_complexity Low_complexity 1 36 0 464 293 155 11 chrY 7610331 7610675 -17102404 - MLT1H1 LTR MaLR -120 422 32 2340 93 0 3 chrY 7611430 7611742 -17101337 - AluY SINE Alu 0 311 1 317 138 0 31 chrY 7611742 7611801 -17101278 - L1P LINE L1 -801 5361 5304 3659 172 30 13 chrY 7611805 7612549 -17100530 + L1PA16 LINE L1 5390 6145 -21 11204 214 98 15 chrY 7612560 7615464 -17097615 + L1M1 LINE L1 17 3159 -4406 * 32373 85 5 0 chrY 7615455 7620082 -17092997 - L1P LINE L1 -1491 4655 7 5075 264 61 17 chrY 7620096 7621981 -17091098 + L1M1 LINE L1 3288 5090 -2475 2025 147 0 7 chrY 7621981 7622305 -17090774 + AluSx SINE Alu 1 312 0 5075 264 61 17 chrY 7622305 7622674 -17090405 + L1M1 LINE L1 5090 5442 -2123 1689 229 33 14 chrY 7622674 7623094 -17089985 + MSTA LTR MaLR 1 428 0 6626 230 32 10 chrY 7623094 7624709 -17088370 + MSTA-int LTR MaLR 1 1651 0 1657 221 64 12 chrY 7624709 7625116 -17087963 + MSTA LTR MaLR 1 428 0 5075 264 61 17 chrY 7625116 7625465 -17087614 + L1M1 LINE L1 5442 5774 -1791 1904 146 6 32 chrY 7625465 7625781 -17087298 + AluSg SINE Alu 3 310 0 5075 264 61 17 chrY 7625781 7626088 -17086991 + L1M1 LINE L1 5774 6333 -1232 674 84 13 0 chrY 7626099 7626357 -17086722 - CER Satellite Satellite 0 261 1 4950 193 25 7 chrY 7626361 7626778 -17086301 + L1MA2 LINE L1 4850 5258 -1046 1787 159 39 62 chrY 7626778 7627106 -17085973 + THE1C LTR MaLR 1 320 -55 1990 139 3 0 chrY 7627106 7627393 -17085686 + AluSg1 SINE Alu 2 289 -20 1787 159 39 62 chrY 7627393 7627448 -17085631 + THE1C LTR MaLR 320 375 0 4950 193 25 7 chrY 7627448 7628462 -17084617 + L1MA2 LINE L1 5258 6304 0 688 176 103 0 chrY 7628489 7628625 -17084454 - MER4B LTR ERV1 -460 150 1 1876 159 3 0 chrY 7628948 7629289 -17083790 + AluSx SINE Alu 1 342 0 685 305 0 0 chrY 7629895 7630069 -17083010 + MER41D LTR ERV1 384 557 0 7472 321 33 19 chrY 7631235 7631396 -17081683 + PRIMA41-int LTR ERV1 1578 1735 -6021 5154 151 87 11 chrY 7631396 7632297 -17080782 - LTR5 LTR ERVK 0 969 1 7472 321 33 19 chrY 7632297 7635036 -17078043 + PRIMA41-int LTR ERV1 1735 4586 -3170 2332 139 3 27 chrY 7635036 7635245 -17077834 - THE1B LTR MaLR 0 364 166 1734 156 4 0 chrY 7635245 7635521 -17077558 + AluSx SINE Alu 23 299 -13 2332 139 3 27 chrY 7635521 7635684 -17077395 - THE1B LTR MaLR -198 166 1 7472 321 33 19 chrY 7635684 7637285 -17075794 + PRIMA41-int LTR ERV1 4586 6163 -1593 495 195 0 0 chrY 7637595 7637713 -17075366 + (TA)n Simple_repeat Simple_repeat 2 119 0 183 42 0 0 chrY 7637716 7637740 -17075339 + (T)n Simple_repeat Simple_repeat 1 24 0 25 0 0 0 chrY 7639023 7639048 -17074031 + AT_rich Low_complexity Low_complexity 1 25 0 7431 35 3 0 chrY 7639048 7640565 -17072514 - L1PA3 LINE L1 0 6155 4636 5604 52 0 0 chrY 7640567 7641297 -17071782 + L1PA3 LINE L1 3900 4629 -1517 3720 254 110 25 chrY 7641300 7643178 -17069901 - L1 LINE L1 -1213 4933 2896 24 32 0 0 chrY 7643620 7643651 -17069428 + AT_rich Low_complexity Low_complexity 1 31 0 9314 141 11 3 chrY 7644468 7644727 -17068352 - L1PA7 LINE L1 -5 6464 6209 1894 152 61 3 chrY 7644727 7645023 -17068056 - AluSp SINE Alu 0 313 1 9314 141 11 3 chrY 7645023 7647127 -17065952 - L1PA7 LINE L1 -260 6209 4099 4655 253 37 40 chrY 7647139 7648974 -17064105 - L1PA7 LINE L1 -4636 1815 10 645 343 28 44 chrY 7649209 7649638 -17063441 + L1MC4a LINE L1 5491 5912 -1896 329 247 28 67 chrY 7649872 7650050 -17063029 - L1M4 LINE L1 -2554 3592 3422 527 211 11 15 chrY 7650095 7650366 -17062713 + GA-rich Low_complexity Low_complexity 1 270 0 1995 162 15 56 chrY 7650651 7651059 -17062020 + MSTD LTR MaLR 4 394 -2 983 98 8 0 chrY 7651338 7651515 -17061564 + BSR/Beta Satellite Satellite 1 178 -56 473 250 81 25 chrY 7651546 7651706 -17061373 + MIR SINE MIR 27 195 -67 324 163 100 12 chrY 7651706 7651786 -17061293 - MLT1I LTR MaLR 0 409 323 1922 136 0 0 chrY 7651821 7652100 -17060979 - AluY SINE Alu -32 279 1 270 297 77 56 chrY 7652119 7652314 -17060765 - MLT1I LTR MaLR -97 312 114 1710 171 0 3 chrY 7652326 7652618 -17060461 + AluSx SINE Alu 2 292 -20 231 263 94 41 chrY 7652775 7652946 -17060133 + LTR41 LTR ERVL 2 181 -592 321 246 27 27 chrY 7653638 7653748 -17059331 + LTR41 LTR ERVL 658 767 -6 276 349 38 0 chrY 7654031 7654137 -17058942 - MIR SINE MIR -75 133 24 488 204 64 63 chrY 7654634 7654854 -17058225 + MLT1H LTR MaLR 71 321 -228 529 299 129 48 chrY 7654966 7655179 -17057900 + L1M4 LINE L1 4957 5151 -995 2209 136 8 8 chrY 7655179 7655532 -17057547 + THE1A LTR MaLR 1 353 -2 529 299 129 48 chrY 7655532 7655612 -17057467 + L1M4 LINE L1 5151 5223 -923 1929 141 3 0 chrY 7655612 7655902 -17057177 + AluSp SINE Alu 1 291 -22 529 299 129 48 chrY 7655902 7656002 -17057077 + L1M4 LINE L1 5223 5383 -763 195 189 27 0 chrY 7656210 7656247 -17056832 + MER5A DNA MER1_type 15 52 -137 333 331 36 7 chrY 7656708 7656847 -17056232 + L1ME4a LINE L1 5975 6117 -4 1459 248 25 14 chrY 7657843 7658202 -17054877 + MLT1A1 LTR MaLR 1 363 -2 378 205 20 72 chrY 7659032 7659227 -17053852 - L1MEc LINE L1 -4158 2238 2054 2334 135 40 13 chrY 7659237 7659615 -17053464 + MSTA LTR MaLR 3 390 -38 1873 123 0 30 chrY 7659615 7659915 -17053164 - AluSc SINE Alu -18 291 1 26 0 0 0 chrY 7659933 7659959 -17053120 + AT_rich Low_complexity Low_complexity 1 26 0 5961 66 3 9 chrY 7659959 7660814 -17052265 - L1PA4 LINE L1 0 6155 5344 232 195 0 0 chrY 7660814 7660855 -17052224 + MSTA LTR MaLR 386 426 0 453 157 0 0 chrY 7660921 7660991 -17052088 - AluJ/FLAM SINE Alu -241 71 2 2023 126 3 3 chrY 7661023 7661325 -17051754 - AluSx SINE Alu -10 302 1 3004 269 75 21 chrY 7661341 7662537 -17050542 - L1MEc LINE L1 -4901 1495 235 348 290 0 11 chrY 7664648 7664741 -17048338 + L1 LINE L1 14 105 -5850 445 235 20 0 chrY 7664743 7664845 -17048234 + FLAM_C SINE Alu 3 106 -37 294 231 51 26 chrY 7664845 7664923 -17048156 + L1 LINE L1 106 185 -5770 428 263 105 12 chrY 7664923 7665094 -17047985 + L1 LINE L1 4434 4620 -1414 686 311 79 41 chrY 7665128 7665467 -17047612 + L1MA9 LINE L1 459 816 -5139 1952 137 3 0 chrY 7665467 7665774 -17047305 + AluSg1 SINE Alu 1 308 -1 686 311 79 41 chrY 7665774 7665826 -17047253 + L1MA9 LINE L1 816 865 -5090 2774 245 61 47 chrY 7665828 7667075 -17046004 + L1MA9 LINE L1 3977 5240 -794 * 41133 71 3 2 chrY 7667067 7673212 -17039867 - L1PA4 LINE L1 0 6155 7 2941 235 65 16 chrY 7673221 7674128 -17038951 + L1MA9 LINE L1 5225 6175 -25 311 179 63 74 chrY 7674152 7674233 -17038846 - L1MC4 LINE L1 -1339 6703 6622 312 27 0 0 chrY 7674233 7674270 -17038809 + (TG)n Simple_repeat Simple_repeat 2 38 0 311 179 63 74 chrY 7674270 7674283 -17038796 - L1MC4 LINE L1 -1420 6622 6610 26 0 0 0 chrY 7674319 7674345 -17038734 + AT_rich Low_complexity Low_complexity 1 26 0 197 425 0 0 chrY 7674809 7674896 -17038183 - L2 LINE L2 -488 2826 2740 189 292 45 34 chrY 7675322 7675411 -17037668 + MER5A DNA MER1_type 30 119 -70 691 184 0 0 chrY 7675414 7675528 -17037551 + AluJb SINE Alu 2 115 -197 418 255 0 39 chrY 7676392 7676545 -17036534 + CT-rich Low_complexity Low_complexity 3 149 0 384 226 0 0 chrY 7676591 7676715 -17036364 + (TG)n Simple_repeat Simple_repeat 2 125 0 657 238 0 4 chrY 7677785 7678033 -17035046 + CT-rich Low_complexity Low_complexity 1 246 0 458 279 112 29 chrY 7678064 7678404 -17034675 + LSAU Satellite Satellite 131 498 0 329 210 36 123 chrY 7679619 7679757 -17033322 + LSAU Satellite Satellite 2 127 -371 200 280 0 0 chrY 7681034 7681084 -17031995 + GA-rich Low_complexity Low_complexity 1 50 0 536 184 0 25 chrY 7682178 7682336 -17030743 + CT-rich Low_complexity Low_complexity 4 157 0 352 277 28 29 chrY 7682415 7682727 -17030352 + LSAU Satellite Satellite 141 498 0 2580 216 16 54 chrY 7683046 7683916 -17029163 + LTR5 LTR ERVK 133 969 0 1204 161 14 89 chrY 7683918 7684198 -17028881 + Tigger1 DNA MER2_type 2160 2418 0 894 196 6 0 chrY 7684202 7684370 -17028709 - AluJo/FRAM SINE Alu -9 303 135 2207 88 10 0 chrY 7684370 7684675 -17028404 - AluY SINE Alu -3 308 1 218 235 20 0 chrY 7685017 7685068 -17028011 + (TTG)n Simple_repeat Simple_repeat 2 53 0 768 240 114 38 chrY 7685074 7685391 -17027688 - L1PB4 LINE L1 -9 6147 5807 354 107 0 0 chrY 7685425 7685481 -17027598 + (TTTTC)n Simple_repeat Simple_repeat 3 58 0 331 223 48 39 chrY 7686201 7686304 -17026775 + MER89 LTR ERV1 323 426 -133 288 0 0 0 chrY 7686456 7686488 -17026591 + (CA)n Simple_repeat Simple_repeat 1 32 0 1462 190 18 0 chrY 7686624 7686903 -17026176 + AluSx SINE Alu 1 284 -28 420 231 0 37 chrY 7686924 7687032 -17026047 + AluJb SINE Alu 130 233 -69 400 138 12 12 chrY 7687084 7687164 -17025915 + CT-rich Low_complexity Low_complexity 1 80 0 186 209 0 0 chrY 7687178 7687221 -17025858 + CT-rich Low_complexity Low_complexity 4 46 0 393 140 0 0 chrY 7687225 7687282 -17025797 - AluJ/FLAM SINE Alu -242 60 4 733 214 133 85 chrY 7687358 7687515 -17025564 - AluJo SINE Alu -16 286 138 207 0 0 0 chrY 7687515 7687538 -17025541 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1942 121 3 0 chrY 7687542 7687824 -17025255 - AluSp SINE Alu -30 283 1 733 214 133 85 chrY 7687824 7687932 -17025147 - AluJo SINE Alu -166 136 3 228 48 48 71 chrY 7687998 7688010 -17025069 - Alu SINE Alu -8 292 281 225 0 0 0 chrY 7688010 7688035 -17025044 + (ATTG)n Simple_repeat Simple_repeat 2 26 0 228 48 48 71 chrY 7688035 7688064 -17025015 - Alu SINE Alu -19 281 252 846 233 0 89 chrY 7688529 7688821 -17024258 + L1PA13 LINE L1 5888 6153 -10 242 116 23 0 chrY 7688824 7688867 -17024212 + GA-rich Low_complexity Low_complexity 1 44 0 1433 163 48 17 chrY 7688961 7689255 -17023824 - AluSx SINE Alu 0 312 10 315 114 0 0 chrY 7689360 7689404 -17023675 + AluSp/q SINE Alu 240 283 -20 278 25 0 25 chrY 7689422 7689462 -17023617 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 1508 187 3 7 chrY 7689531 7689825 -17023254 + AluSg SINE Alu 8 300 -10 900 78 13 26 chrY 7689828 7689981 -17023098 + (GAAAA)n Simple_repeat Simple_repeat 2 152 0 381 191 0 0 chrY 7690006 7690116 -17022963 + CT-rich Low_complexity Low_complexity 2 111 0 597 194 0 0 chrY 7690143 7690313 -17022766 + CT-rich Low_complexity Low_complexity 2 171 0 211 194 32 16 chrY 7690316 7690378 -17022701 + (TCTCTG)n Simple_repeat Simple_repeat 4 66 0 762 175 0 0 chrY 7690380 7690557 -17022522 + CT-rich Low_complexity Low_complexity 1 177 0 693 181 0 0 chrY 7690586 7690763 -17022316 + CT-rich Low_complexity Low_complexity 2 178 0 431 201 7 0 chrY 7690774 7690913 -17022166 + CT-rich Low_complexity Low_complexity 1 140 0 302 337 55 30 chrY 7690913 7691112 -17021967 - L1M4c LINE L1 -5078 1306 1103 465 238 8 24 chrY 7691150 7691276 -17021803 + MER39B LTR ERV1 284 407 -246 1812 115 0 21 chrY 7691413 7691722 -17021357 + AluSx SINE Alu 1 303 0 222 208 0 0 chrY 7692845 7692898 -17020181 + (CTG)n Simple_repeat Simple_repeat 1 53 0 527 201 6 0 chrY 7692987 7693166 -17019913 + CT-rich Low_complexity Low_complexity 1 180 0 562 183 6 11 chrY 7693190 7693370 -17019709 + CT-rich Low_complexity Low_complexity 2 180 0 328 293 113 63 chrY 7693383 7693762 -17019317 - HAL1 LINE L1 -1230 1277 880 435 162 0 0 chrY 7693770 7693869 -17019210 + CT-rich Low_complexity Low_complexity 2 100 0 277 171 43 0 chrY 7693870 7693940 -17019139 + (TCTG)n Simple_repeat Simple_repeat 2 74 0 630 189 0 0 chrY 7693943 7694123 -17018956 + CT-rich Low_complexity Low_complexity 1 180 0 186 348 79 0 chrY 7694426 7694515 -17018564 + L2 LINE L2 2481 2576 -738 283 290 0 28 chrY 7694530 7694637 -17018442 - L1MC/D LINE L1 -591 5768 5665 183 42 0 0 chrY 7695174 7695198 -17017881 + (GGGTG)n Simple_repeat Simple_repeat 3 26 0 847 154 160 5 chrY 7695427 7695615 -17017464 - AluSg/x SINE Alu 0 312 96 189 0 0 0 chrY 7696380 7696401 -17016678 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 2166 117 0 3 chrY 7696408 7696699 -17016380 - AluSc SINE Alu -18 291 2 5204 40 2 0 chrY 7699410 7700037 -17013042 - L1P LINE L1 -932 5214 4587 4752 53 0 4 chrY 7700038 7700610 -17012469 + L1PA3 LINE L1 5593 6155 0 247 288 24 40 chrY 7700707 7700832 -17012247 - LTR54B LTR ERV1 -337 161 39 622 160 0 130 chrY 7701176 7701345 -17011734 + AluJb SINE Alu 137 283 -29 1788 147 14 0 chrY 7701431 7701723 -17011356 - AluSp SINE Alu -17 296 1 23 54 0 0 chrY 7701730 7701767 -17011312 + AT_rich Low_complexity Low_complexity 1 37 0 2278 70 0 3 chrY 7701781 7702065 -17011014 - AluY SINE Alu -28 283 1 1143 253 92 82 chrY 7702069 7702666 -17010413 - L1M4 LINE L1 -946 5200 4598 360 211 84 23 chrY 7703282 7703404 -17009675 + L1MD2 LINE L1 5706 5816 -305 314 278 174 40 chrY 7704246 7704545 -17008534 - L1MC4 LINE L1 -109 7933 7595 198 71 0 0 chrY 7704550 7704578 -17008501 + (CAT)n Simple_repeat Simple_repeat 1 28 0 333 171 41 82 chrY 7705458 7705604 -17007475 + (GAGTG)n Simple_repeat Simple_repeat 4 143 0 872 172 18 6 chrY 7705769 7705932 -17007147 + L1MC1 LINE L1 6169 6333 0 207 260 0 14 chrY 7705951 7706024 -17007055 + L2 LINE L2 1721 1792 -1522 534 284 93 60 chrY 7706126 7706875 -17006204 + L2 LINE L2 2400 3295 -18 1881 141 20 10 chrY 7706951 7707250 -17005829 + AluJb SINE Alu 1 302 -10 2663 108 13 0 chrY 7707325 7707723 -17005356 + L1MA5A LINE L1 5742 6144 -153 1878 123 14 10 chrY 7707724 7708016 -17005063 + AluSx SINE Alu 6 298 -14 1563 162 30 43 chrY 7708216 7708519 -17004560 + AluJo SINE Alu 1 299 -13 2236 107 0 0 chrY 7708604 7708894 -17004185 - AluSg SINE Alu -20 290 1 2089 119 10 6 chrY 7708904 7709215 -17003864 - AluSx SINE Alu 0 312 1 2228 110 7 0 chrY 7709859 7710158 -17002921 - AluSg SINE Alu -9 301 1 1054 140 45 30 chrY 7710258 7710458 -17002621 + MER3 DNA MER1_type 1 203 -6 1823 190 67 36 chrY 7710556 7710865 -17002214 + MER63B DNA MER1_type 1 328 -734 1575 185 49 3 chrY 7710865 7711152 -17001927 - AluJo SINE Alu -12 300 1 1823 190 67 36 chrY 7711152 7711263 -17001816 + MER63B DNA MER1_type 328 434 -2 298 225 0 72 chrY 7715483 7715594 -16997485 + MER45C DNA AcHobo 488 590 -363 1260 249 65 32 chrY 7717733 7718166 -16994913 + L1MD2 LINE L1 5895 6341 -18 290 359 51 19 chrY 7718588 7718744 -16994335 + MIR3 SINE MIR 33 193 -15 1134 173 9 2 chrY 7718856 7723886 -16989193 + ALR/Alpha Satellite centromeric 1 5066 -75 235 146 0 91 chrY 7724280 7724335 -16988744 + LTR66 LTR ERVL 390 439 -171 8065 28 3 0 chrY 7724369 7725987 -16987092 + L1PA3 LINE L1 4535 6155 0 1043 175 6 2 chrY 7726002 7730762 -16982317 - ALR/Alpha Satellite centromeric 0 4779 1 9604 43 1 0 chrY 7730762 7731924 -16981155 - L1P LINE L1 -1535 4611 3449 1103 175 6 6 chrY 7731924 7735951 -16977128 - ALR/Alpha Satellite centromeric 0 4030 1 1111 30 0 0 chrY 7735951 7736082 -16976997 - L1P LINE L1 -1572 4574 4444 8198 20 0 3 chrY 7736082 7737598 -16975481 + L1PA2 LINE L1 4637 6149 -6 1210 162 5 2 chrY 7737623 7745450 -16967629 - ALR/Alpha Satellite centromeric -4 7852 1 262 175 165 0 chrY 7745488 7745585 -16967494 - ALR/Alpha Satellite centromeric -47 124 12 1024 155 7 2 chrY 7745874 7746817 -16966262 - ALR/Alpha Satellite centromeric 0 947 1 1285 154 4 4 chrY 7746822 7747062 -16966017 - L1PA3 LINE L1 0 6155 5916 1088 156 5 1 chrY 7747344 7750406 -16962673 + ALR/Alpha Satellite centromeric 1 3075 -80 1178 156 3 1 chrY 7750506 7754274 -16958805 - ALR/Alpha Satellite centromeric 0 3772 1 1115 158 9 6 chrY 7754285 7758459 -16954620 - ALR/Alpha Satellite centromeric 0 6268 695 6847 60 5 0 chrY 7758459 7759841 -16953238 - L1PA3 LINE L1 -3 6152 4767 1115 158 9 6 chrY 7759841 7760538 -16952541 - ALR/Alpha Satellite centromeric -5573 695 1 17118 64 5 3 chrY 7760543 7763617 -16949462 - L1PA3 LINE L1 0 6155 3076 4495 87 1 5 chrY 7763617 7765495 -16947584 - L1PA3 LINE L1 -4199 1947 1 1114 165 3 2 chrY 7765498 7768855 -16944224 - ALR/Alpha Satellite centromeric -1 3359 1 4935 54 3 0 chrY 7768956 7770098 -16942981 - L1PA3 LINE L1 -242 5913 4769 1112 155 8 0 chrY 7770098 7771451 -16941628 - ALR/Alpha Satellite centromeric -4 1362 1 1082 163 5 1 chrY 7771597 7779327 -16933752 - ALR/Alpha Satellite centromeric -1 7756 1 1096 164 5 0 chrY 7779341 7784011 -16929068 - ALR/Alpha Satellite centromeric 0 4690 1 2662 49 0 0 chrY 7784023 7784331 -16928748 + AluYb8 SINE Alu 1 308 -10 1120 165 6 1 chrY 7784334 7788568 -16924511 - ALR/Alpha Satellite centromeric 0 4252 1 486 155 0 0 chrY 7788574 7788671 -16924408 + (CATTC)n Simple_repeat Simple_repeat 1 97 0 332 161 32 0 chrY 7788686 7788748 -16924331 - AluS SINE Alu -14 287 224 870 148 0 0 chrY 7788760 7788922 -16924157 + (CACTC)n Simple_repeat Simple_repeat 1 162 0 204 111 0 0 chrY 7788933 7788969 -16924110 + (CATTC)n Simple_repeat Simple_repeat 3 38 0 252 234 31 0 chrY 7788977 7789041 -16924038 - AluJ/FRAM SINE Alu -12 290 225 503 171 16 0 chrY 7789041 7789164 -16923915 + (CATTC)n Simple_repeat Simple_repeat 2 126 0 277 229 0 0 chrY 7789164 7789225 -16923854 - AluJ/FRAM SINE Alu -14 288 228 894 153 0 0 chrY 7789257 7789434 -16923645 + (CATTC)n Simple_repeat Simple_repeat 3 179 0 * 935 142 6 0 chrY 7789420 7789596 -16923483 + (CACTC)n Simple_repeat Simple_repeat 1 177 0 819 169 0 0 chrY 7789609 7789781 -16923298 + (CACTC)n Simple_repeat Simple_repeat 1 172 0 891 174 4 0 chrY 7789861 7790365 -16922714 + (CATTC)n Satellite Satellite 1 506 0 298 222 16 0 chrY 7790365 7790428 -16922651 - AluJ/FRAM SINE Alu -14 288 225 236 177 32 0 chrY 7790428 7790490 -16922589 + (CATTC)n Simple_repeat Simple_repeat 2 65 0 1134 100 0 0 chrY 7790607 7790798 -16922281 + (CATTC)n Satellite Satellite 1 371 0 1134 100 0 0 chrY 7790798 7790978 -16922101 + (CATTC)n Satellite Satellite 1 180 0 338 175 16 0 chrY 7791039 7791102 -16921977 - AluJ/FRAM SINE Alu -14 288 225 1140 84 0 0 chrY 7791112 7791278 -16921801 + (CATTC)n Simple_repeat Simple_repeat 4 169 0 681 190 0 0 chrY 7791283 7791457 -16921622 + (CACTC)n Simple_repeat Simple_repeat 4 177 0 275 214 0 0 chrY 7791479 7791535 -16921544 - AluS SINE Alu -22 278 223 971 126 0 6 chrY 7791684 7791858 -16921221 + (CATTC)n Simple_repeat Simple_repeat 2 174 0 283 250 29 0 chrY 7791861 7791929 -16921150 - AluS SINE Alu -8 293 224 1011 139 0 0 chrY 7791942 7791966 -16921113 + (CACTC)n Simple_repeat Simple_repeat 1 204 0 1011 139 0 0 chrY 7791966 7792146 -16920933 + (CACTC)n Simple_repeat Simple_repeat 1 180 0 753 159 0 0 chrY 7792200 7792363 -16920716 + (CATTC)n Simple_repeat Simple_repeat 5 167 0 318 172 31 0 chrY 7792367 7792431 -16920648 - AluJ/FRAM SINE Alu -12 290 225 360 138 0 0 chrY 7792448 7792513 -16920566 + (CACTC)n Simple_repeat Simple_repeat 1 65 0 672 136 0 0 chrY 7792713 7792838 -16920241 + (GAATG)n Simple_repeat Simple_repeat 1 125 0 329 188 31 0 chrY 7792850 7792914 -16920165 + AluS SINE Alu 225 290 -12 1026 96 0 0 chrY 7792955 7793112 -16919967 + (GAGTG)n Simple_repeat Simple_repeat 4 160 0 314 172 31 0 chrY 7793127 7793191 -16919888 + Alu SINE Alu 224 289 -12 1326 56 0 0 chrY 7793192 7793372 -16919707 + (GAATG)n Simple_repeat Simple_repeat 1 180 0 257 250 31 0 chrY 7793389 7793453 -16919626 + AluS SINE Alu 223 288 -12 192 217 0 0 chrY 7793453 7793499 -16919580 + (GAATG)n Simple_repeat Simple_repeat 1 46 0 708 145 0 0 chrY 7793571 7793702 -16919377 + (GAATG)n Simple_repeat Simple_repeat 5 135 0 286 222 32 0 chrY 7793714 7793777 -16919302 + AluS SINE Alu 225 289 -12 1377 85 4 4 chrY 7793777 7794113 -16918966 + (GAATG)n Satellite Satellite 2 513 0 297 206 0 0 chrY 7994124 7994221 -16718858 + (GAATG)n Satellite Satellite 4 100 0 551 182 6 0 chrY 7994235 7994405 -16718674 + (GAATG)n Satellite Satellite 4 174 0 676 168 9 0 chrY 7994443 7994681 -16718398 + (GAATG)n Satellite Satellite 1 240 0 839 184 2 0 chrY 7994701 7995127 -16717952 + (GAATG)n Satellite Satellite 1 427 0 549 203 0 0 chrY 7995160 7995337 -16717742 + (GAATG)n Satellite Satellite 4 180 0 729 176 0 0 chrY 7995396 7995659 -16717420 + (GAATG)n Satellite Satellite 1 263 0 521 233 4 0 chrY 7995683 7995955 -16717124 + (GAATG)n Satellite Satellite 1 273 0 612 196 0 0 chrY 7995969 7996148 -16716931 + (GAATG)n Satellite Satellite 2 180 0 1101 167 1 0 chrY 7996164 7996873 -16716206 + (GAATG)n Satellite Satellite 1 710 0 795 180 0 3 chrY 7996914 7997280 -16715799 + (GAATG)n Satellite Satellite 1 364 0 678 195 0 0 chrY 7997301 7997647 -16715432 + (GAATG)n Satellite Satellite 1 346 0 486 216 0 0 chrY 7997666 7997842 -16715237 + (GAATG)n Satellite Satellite 4 179 0 675 205 5 3 chrY 7997878 7998265 -16714814 + (GAATG)n Satellite Satellite 1 388 0 1093 150 2 6 chrY 7998298 7999137 -16713942 + (GAATG)n Satellite Satellite 4 1011 0 204 150 25 0 chrY 7999137 7999177 -16713902 + (AATTG)n Simple_repeat Simple_repeat 2 42 0 366 224 0 0 chrY 7999181 7999328 -16713751 + (GAATG)n Satellite Satellite 4 150 0 735 190 0 0 chrY 7999361 7999718 -16713361 + (GAATG)n Satellite Satellite 1 357 0 654 179 0 0 chrY 7999751 7999924 -16713155 + (GAATG)n Satellite Satellite 3 175 0 747 169 0 0 chrY 7999954 8000131 -16712948 + (GAATG)n Satellite Satellite 4 180 0 693 195 0 7 chrY 8000144 8000817 -16712262 + (GAATG)n Satellite Satellite 1 668 0 939 156 0 4 chrY 8000837 8001196 -16711883 + (GAATG)n Satellite Satellite 1 536 0 258 205 0 0 chrY 8001251 8001329 -16711750 + (GAATG)n Satellite Satellite 3 80 0 773 154 0 16 chrY 8001393 8001575 -16711504 + (GAATG)n Satellite Satellite 1 179 0 222 180 0 0 chrY 8001594 8001655 -16711424 + (GAATG)n Satellite Satellite 5 65 0 801 153 0 0 chrY 8001674 8001850 -16711229 + (GAATG)n Satellite Satellite 4 179 0 885 171 0 0 chrY 8001928 8002326 -16710753 + (GAATG)n Satellite Satellite 1 398 0 445 211 6 6 chrY 8002362 8002542 -16710537 + (GAATG)n Satellite Satellite 1 180 0 836 173 6 4 chrY 8002598 8003084 -16709995 + (GAATG)n Satellite Satellite 1 487 0 432 179 0 0 chrY 8003132 8003249 -16709830 + (GAATG)n Satellite Satellite 4 120 0 651 178 0 0 chrY 8003267 8003436 -16709643 + (GAATG)n Satellite Satellite 1 169 0 730 171 4 4 chrY 8003448 8003690 -16709389 + (GAATG)n Satellite Satellite 1 242 0 945 172 0 0 chrY 8003716 8004017 -16709062 + (GAATG)n Satellite Satellite 1 301 0 1086 140 0 0 chrY 8004037 8004382 -16708697 + (GAATG)n Satellite Satellite 1 345 0 810 157 3 0 chrY 8004434 8004784 -16708295 + (GAATG)n Satellite Satellite 1 351 0 468 223 0 0 chrY 8004805 8004980 -16708099 + (GAATG)n Satellite Satellite 5 179 0 870 156 0 0 chrY 8005004 8005458 -16707621 + (GAATG)n Satellite Satellite 1 454 0 839 154 0 15 chrY 8005500 8005826 -16707253 + (GAATG)n Satellite Satellite 1 321 0 709 197 3 3 chrY 8005874 8006283 -16706796 + (GAATG)n Satellite Satellite 1 409 0 1158 85 0 0 chrY 8006329 8006506 -16706573 + (GAATG)n Satellite Satellite 4 180 0 1434 72 0 2 chrY 8006528 8006876 -16706203 + (GAATG)n Satellite Satellite 1 525 0 213 267 12 0 chrY 8006881 8006967 -16706112 + (AATAG)n Simple_repeat Simple_repeat 3 89 0 600 196 0 0 chrY 8006969 8007148 -16705931 + (GAATG)n Satellite Satellite 1 179 0 879 188 1 0 chrY 8007184 8008290 -16704789 + (GAATG)n Satellite Satellite 1 1107 0 705 199 0 0 chrY 8008303 8008736 -16704343 + (GAATG)n Satellite Satellite 1 433 0 468 214 0 0 chrY 8008748 8008921 -16704158 + (GAATG)n Satellite Satellite 2 174 0 939 152 0 4 chrY 8008937 8009297 -16703782 + (GAATG)n Satellite Satellite 2 538 0 816 151 0 0 chrY 8009323 8009502 -16703577 + (GAATG)n Satellite Satellite 1 179 0 684 193 0 0 chrY 8009549 8009986 -16703093 + (GAATG)n Satellite Satellite 1 437 0 960 124 0 0 chrY 8010004 8010182 -16702897 + (GAATG)n Satellite Satellite 1 178 0 795 171 0 0 chrY 8010256 8010503 -16702576 + (GAATG)n Satellite Satellite 1 247 0 840 156 0 0 chrY 8010518 8010698 -16702381 + (GAATG)n Satellite Satellite 1 180 0 714 143 0 0 chrY 8010718 8010865 -16702214 + (GAATG)n Satellite Satellite 4 150 0 1032 138 0 9 chrY 8010928 8011286 -16701793 + (GAATG)n Satellite Satellite 4 528 0 213 138 62 0 chrY 8011290 8011355 -16701724 - HSATII Satellite Satellite -82 88 20 655 164 6 6 chrY 8011365 8011542 -16701537 + (GAATG)n Satellite Satellite 4 180 0 798 116 6 28 chrY 8011565 8011746 -16701333 + (GAATG)n Satellite Satellite 4 180 0 366 197 0 0 chrY 8011764 8011881 -16701198 + (GAATG)n Satellite Satellite 4 120 0 564 200 0 0 chrY 8011914 8012094 -16700985 + (GAATG)n Satellite Satellite 1 180 0 872 128 0 23 chrY 8012140 8012359 -16700720 + (GAATG)n Satellite Satellite 1 214 0 689 163 6 0 chrY 8012394 8012572 -16700507 + (GAATG)n Satellite Satellite 2 180 0 864 167 3 3 chrY 8012609 8013810 -16699269 + (GAATG)n Satellite Satellite 1 1201 0 375 186 0 0 chrY 8013863 8013960 -16699119 + (GAATG)n Satellite Satellite 4 100 0 609 184 0 0 chrY 8014024 8014182 -16698897 + (GAATG)n Satellite Satellite 2 159 0 909 156 0 0 chrY 8014199 8014593 -16698486 + (GAATG)n Satellite Satellite 1 394 0 813 188 1 0 chrY 8014638 8015381 -16697698 + (GAATG)n Satellite Satellite 1 744 0 954 204 3 3 chrY 8015392 8016129 -16696950 + (GAATG)n Satellite Satellite 1 737 0 1023 132 0 4 chrY 8016177 8016534 -16696545 + (GAATG)n Satellite Satellite 2 535 0 1065 153 0 0 chrY 8016584 8016896 -16696183 + (GAATG)n Satellite Satellite 1 312 0 396 221 0 0 chrY 8016929 8017078 -16696001 + (GAATG)n Satellite Satellite 2 150 0 792 173 0 0 chrY 8017095 8017274 -16695805 + (GAATG)n Satellite Satellite 1 179 0 923 141 3 14 chrY 8017295 8017657 -16695422 + (GAATG)n Satellite Satellite 1 358 0 660 172 0 0 chrY 8017676 8017850 -16695229 + (GAATG)n Satellite Satellite 4 177 0 429 223 0 0 chrY 8017915 8018081 -16694998 + (GAATG)n Satellite Satellite 3 168 0 786 179 0 0 chrY 8018094 8018577 -16694502 + (GAATG)n Satellite Satellite 1 483 0 939 151 0 20 chrY 8018609 8018973 -16694106 + (GAATG)n Satellite Satellite 5 529 0 735 191 0 9 chrY 8019032 8019574 -16693505 + (GAATG)n Satellite Satellite 1 536 0 564 148 0 0 chrY 8019607 8019729 -16693350 + (GAATG)n Satellite Satellite 4 125 0 923 171 1 4 chrY 8019751 8020566 -16692513 + (GAATG)n Satellite Satellite 1 812 0 729 158 0 0 chrY 8020598 8020822 -16692257 + (GAATG)n Satellite Satellite 1 224 0 486 216 0 0 chrY 8020834 8021005 -16692074 + (GAATG)n Satellite Satellite 4 174 0 746 182 3 0 chrY 8021055 8021402 -16691677 + (GAATG)n Satellite Satellite 1 348 0 999 168 2 0 chrY 8021446 8021956 -16691123 + (GAATG)n Satellite Satellite 1 511 0 876 143 7 4 chrY 8022010 8022302 -16690777 + (GAATG)n Satellite Satellite 1 293 0 906 163 1 4 chrY 8022360 8022901 -16690178 + (GAATG)n Satellite Satellite 2 717 0 975 103 0 0 chrY 8022936 8023091 -16689988 + (GAATG)n Satellite Satellite 4 158 0 356 217 13 0 chrY 8023110 8023267 -16689812 + (GAATG)n Satellite Satellite 1 159 0 885 163 0 0 chrY 8023334 8023696 -16689383 + (GAATG)n Satellite Satellite 1 362 0 588 195 0 0 chrY 8023747 8023921 -16689158 + (GAATG)n Satellite Satellite 2 175 0 789 170 3 0 chrY 8023937 8024298 -16688781 + (GAATG)n Satellite Satellite 1 362 0 510 220 0 0 chrY 8024336 8024513 -16688566 + (GAATG)n Satellite Satellite 4 180 0 749 165 0 16 chrY 8024532 8024858 -16688221 + (GAATG)n Satellite Satellite 1 320 0 981 142 0 9 chrY 8024871 8025227 -16687852 + (GAATG)n Satellite Satellite 4 525 0 249 198 0 0 chrY 8025307 8025388 -16687691 + (GAATG)n Satellite Satellite 4 84 0 993 150 3 4 chrY 8025439 8025959 -16687120 + (GAATG)n Satellite Satellite 2 697 0 761 146 0 20 chrY 8025980 8026240 -16686839 + (GAATG)n Satellite Satellite 1 254 0 420 227 0 0 chrY 8026260 8026436 -16686643 + (GAATG)n Satellite Satellite 5 180 0 669 194 0 0 chrY 8026455 8026635 -16686444 + (GAATG)n Satellite Satellite 1 180 0 600 208 4 0 chrY 8026685 8027201 -16685878 + (GAATG)n Satellite Satellite 1 518 0 716 194 2 0 chrY 8027214 8027650 -16685429 + (GAATG)n Satellite Satellite 1 437 0 721 147 4 22 chrY 8027690 8027927 -16685152 + (GAATG)n Satellite Satellite 1 232 0 957 99 12 6 chrY 8027964 8028135 -16684944 + (GAATG)n Satellite Satellite 4 175 0 582 184 0 0 chrY 8028242 8028421 -16684658 + (GAATG)n Satellite Satellite 2 180 0 411 216 0 0 chrY 8028442 8028609 -16684470 + (GAATG)n Satellite Satellite 4 170 0 966 154 0 6 chrY 8028642 8029454 -16683625 + (GAATG)n Satellite Satellite 1 806 0 612 143 0 0 chrY 8029532 8029658 -16683421 + (GAATG)n Satellite Satellite 5 130 0 525 199 0 0 chrY 8029698 8029859 -16683220 + (GAATG)n Satellite Satellite 4 164 0 860 184 2 0 chrY 8029898 8030522 -16682557 + (GAATG)n Satellite Satellite 1 625 0 594 189 0 0 chrY 8030557 8030732 -16682347 + (GAATG)n Satellite Satellite 4 178 0 960 150 0 0 chrY 8030750 8031016 -16682063 + (GAATG)n Satellite Satellite 1 266 0 407 225 6 0 chrY 8031089 8031258 -16681821 + (GAATG)n Satellite Satellite 2 171 0 405 172 0 0 chrY 8031324 8031417 -16681662 + (GAATG)n Satellite Satellite 3 95 0 831 195 0 6 chrY 8031434 8032122 -16680957 + (GAATG)n Satellite Satellite 1 684 0 692 183 2 9 chrY 8032138 8032689 -16680390 + (GAATG)n Satellite Satellite 1 547 0 633 185 0 0 chrY 8032711 8032884 -16680195 + (GAATG)n Satellite Satellite 4 176 0 378 239 0 0 chrY 8032903 8033079 -16680000 + (GAATG)n Satellite Satellite 4 179 0 831 147 0 0 chrY 8033112 8033289 -16679790 + (GAATG)n Satellite Satellite 4 180 0 1200 140 0 2 chrY 8033363 8033957 -16679122 + (GAATG)n Satellite Satellite 1 772 0 1200 89 0 0 chrY 8033957 8034137 -16678942 + (GAATG)n Satellite Satellite 1 180 0 939 148 0 0 chrY 8034271 8034619 -16678460 + (GAATG)n Satellite Satellite 1 348 0 441 167 0 0 chrY 8034686 8034788 -16678291 + (GAATG)n Satellite Satellite 4 105 0 750 174 0 0 chrY 8034827 8034999 -16678080 + (GAATG)n Satellite Satellite 3 174 0 1080 152 0 7 chrY 8035046 8035583 -16677496 + (GAATG)n Satellite Satellite 4 708 0 453 226 0 0 chrY 8035631 8035808 -16677271 + (GAATG)n Satellite Satellite 4 180 0 291 141 0 0 chrY 8035856 8035920 -16677159 + (GAATG)n Satellite Satellite 2 65 0 678 184 0 0 chrY 8035932 8036111 -16676968 + (GAATG)n Satellite Satellite 1 179 0 797 160 0 19 chrY 8036131 8036396 -16676683 + (GAATG)n Satellite Satellite 1 259 0 537 208 0 0 chrY 8036416 8036594 -16676485 + (GAATG)n Satellite Satellite 3 180 0 870 158 4 0 chrY 8036631 8036877 -16676202 + (GAATG)n Satellite Satellite 1 247 0 753 168 0 0 chrY 8036926 8037105 -16675974 + (GAATG)n Satellite Satellite 1 179 0 943 174 2 10 chrY 8037120 8037834 -16675245 + (GAATG)n Satellite Satellite 4 884 0 1278 134 0 4 chrY 8037853 8038450 -16674629 + (GAATG)n Satellite Satellite 2 771 0 548 205 6 0 chrY 8038467 8038633 -16674446 + (GAATG)n Satellite Satellite 4 170 0 599 192 6 0 chrY 8038696 8038873 -16674206 + (GAATG)n Satellite Satellite 3 180 0 1116 126 0 0 chrY 8038912 8039373 -16673706 + (GAATG)n Satellite Satellite 1 461 0 1404 110 0 10 chrY 8039390 8039884 -16673195 + (GAATG)n Satellite Satellite 1 666 0 747 196 0 0 chrY 8039906 8040254 -16672825 + (GAATG)n Satellite Satellite 1 348 0 800 174 1 5 chrY 8040281 8040989 -16672090 + (GAATG)n Satellite Satellite 1 705 0 1028 155 5 10 chrY 8041019 8042300 -16670779 + (GAATG)n Satellite Satellite 4 1425 0 252 218 0 0 chrY 8042335 8042422 -16670657 + (GAATG)n Satellite Satellite 4 90 0 720 165 0 0 chrY 8042486 8042644 -16670435 + (GAATG)n Satellite Satellite 2 159 0 897 155 2 7 chrY 8042660 8043016 -16670063 + (GAATG)n Satellite Satellite 3 528 0 419 174 9 0 chrY 8043050 8043165 -16669914 + (GAATG)n Satellite Satellite 4 119 0 744 179 0 0 chrY 8043188 8043547 -16669532 + (GAATG)n Satellite Satellite 1 359 0 734 174 0 11 chrY 8043602 8043968 -16669111 + (GAATG)n Satellite Satellite 1 361 0 198 256 0 0 chrY 8043990 8044127 -16668952 + (GAATG)n Satellite Satellite 2 138 0 1071 167 2 5 chrY 8044168 8044593 -16668486 + (GAATG)n Satellite Satellite 1 602 0 1071 112 0 0 chrY 8044593 8044772 -16668307 + (GAATG)n Satellite Satellite 1 179 0 270 204 0 0 chrY 8044858 8044946 -16668133 + (GAATG)n Satellite Satellite 2 89 0 731 200 0 10 chrY 8044987 8045482 -16667597 + (GAATG)n Satellite Satellite 1 489 0 624 200 0 0 chrY 8045502 8045682 -16667397 + (GAATG)n Satellite Satellite 1 180 0 1062 126 0 1 chrY 8045693 8046186 -16666893 + (GAATG)n Satellite Satellite 1 672 0 753 175 0 0 chrY 8046238 8046744 -16666335 + (GAATG)n Satellite Satellite 1 506 0 810 183 0 0 chrY 8046762 8047275 -16665804 + (GAATG)n Satellite Satellite 1 513 0 1110 146 0 0 chrY 8047292 8047644 -16665435 + (GAATG)n Satellite Satellite 1 352 0 864 183 0 1 chrY 8047737 8048455 -16664624 + (GAATG)n Satellite Satellite 1 717 0 918 139 0 0 chrY 8048471 8048698 -16664381 + (GAATG)n Satellite Satellite 1 227 0 612 202 0 0 chrY 8048738 8049071 -16664008 + (GAATG)n Satellite Satellite 1 333 0 828 154 0 0 chrY 8049114 8049470 -16663609 + (GAATG)n Satellite Satellite 1 356 0 421 186 7 7 chrY 8049491 8049631 -16663448 + (GAATG)n Satellite Satellite 3 142 0 612 196 0 0 chrY 8049643 8049822 -16663257 + (GAATG)n Satellite Satellite 2 180 0 443 196 0 27 chrY 8049868 8050052 -16663027 + (GAATG)n Satellite Satellite 2 180 0 921 168 0 9 chrY 8050093 8050520 -16662559 + (GAATG)n Satellite Satellite 1 422 0 699 183 0 0 chrY 8050532 8050712 -16662367 + (GAATG)n Satellite Satellite 1 180 0 777 162 0 0 chrY 8050748 8050921 -16662158 + (GAATG)n Satellite Satellite 2 174 0 1016 106 6 0 chrY 8050947 8051126 -16661953 + (GAATG)n Satellite Satellite 1 180 0 879 171 0 0 chrY 8051150 8051507 -16661572 + (GAATG)n Satellite Satellite 1 357 0 478 198 11 0 chrY 8051540 8051717 -16661362 + (GAATG)n Satellite Satellite 2 180 0 1014 120 0 0 chrY 8051740 8051915 -16661164 + (GAATG)n Satellite Satellite 4 178 0 873 187 0 0 chrY 8051938 8052293 -16660786 + (GAATG)n Satellite Satellite 1 355 0 675 178 0 0 chrY 8052317 8052564 -16660515 + (GAATG)n Satellite Satellite 1 247 0 1107 145 1 5 chrY 8052617 8053437 -16659642 + (GAATG)n Satellite Satellite 1 988 0 972 121 0 0 chrY 8053437 8053610 -16659469 + (GAATG)n Satellite Satellite 2 174 0 206 259 9 0 chrY 8053631 8053747 -16659332 + (AATAG)n Simple_repeat Simple_repeat 5 121 0 957 153 0 0 chrY 8053765 8054125 -16658954 + (GAATG)n Satellite Satellite 1 360 0 771 170 0 0 chrY 8054166 8054670 -16658409 + (GAATG)n Satellite Satellite 1 504 0 973 174 2 2 chrY 8054699 8055159 -16657920 + (GAATG)n Satellite Satellite 1 460 0 738 161 0 0 chrY 8055173 8055347 -16657732 + (GAATG)n Satellite Satellite 4 177 0 1101 128 0 0 chrY 8055380 8055750 -16657329 + (GAATG)n Satellite Satellite 1 370 0 1020 129 0 14 chrY 8055791 8056152 -16656927 + (GAATG)n Satellite Satellite 1 356 0 543 201 0 0 chrY 8056190 8056369 -16656710 + (GAATG)n Satellite Satellite 2 180 0 741 172 0 0 chrY 8056385 8056565 -16656514 + (GAATG)n Satellite Satellite 1 180 0 798 186 2 14 chrY 8056586 8057028 -16656051 + (GAATG)n Satellite Satellite 1 436 0 515 201 6 0 chrY 8057039 8057218 -16655861 + (GAATG)n Satellite Satellite 1 180 0 587 174 0 22 chrY 8057232 8057416 -16655663 + (GAATG)n Satellite Satellite 1 180 0 1149 155 0 2 chrY 8057452 8058277 -16654802 + (GAATG)n Satellite Satellite 1 1001 0 813 149 0 0 chrY 8058340 8058515 -16654564 + (GAATG)n Satellite Satellite 1 175 0 885 162 0 11 chrY 8058534 8058996 -16654083 + (GAATG)n Satellite Satellite 1 456 0 599 199 3 14 chrY 8059008 8059361 -16653718 + (GAATG)n Satellite Satellite 1 348 0 569 194 6 0 chrY 8059388 8059553 -16653526 + (GAATG)n Satellite Satellite 4 169 0 765 158 0 0 chrY 8059571 8059748 -16653331 + (GAATG)n Satellite Satellite 4 180 0 1239 161 0 1 chrY 8059761 8060343 -16652736 + (GAATG)n Satellite Satellite 1 761 0 849 180 0 0 chrY 8060376 8060710 -16652369 + (GAATG)n Satellite Satellite 1 334 0 782 148 6 0 chrY 8060747 8060923 -16652156 + (GAATG)n Satellite Satellite 3 179 0 798 157 0 0 chrY 8060946 8061192 -16651887 + (GAATG)n Satellite Satellite 1 246 0 1005 126 0 11 chrY 8061206 8061567 -16651512 + (GAATG)n Satellite Satellite 1 533 0 687 203 0 0 chrY 8061650 8062193 -16650886 + (GAATG)n Satellite Satellite 1 543 0 861 140 0 0 chrY 8062205 8062369 -16650710 + (GAATG)n Satellite Satellite 2 165 0 282 132 0 0 chrY 8062381 8062434 -16650645 + (GAATG)n Satellite Satellite 2 54 0 747 174 5 0 chrY 8062451 8062888 -16650191 + (GAATG)n Satellite Satellite 1 439 0 947 124 6 0 chrY 8062913 8063090 -16649989 + (GAATG)n Satellite Satellite 3 180 0 357 191 0 0 chrY 8063113 8063223 -16649856 + (GAATG)n Satellite Satellite 5 114 0 735 169 0 0 chrY 8063243 8063420 -16649659 + (GAATG)n Satellite Satellite 3 179 0 180 111 0 0 chrY 8063476 8063503 -16649576 + (GAGTG)n Simple_repeat Simple_repeat 4 30 0 951 130 0 0 chrY 8063522 8063995 -16649084 + (GAATG)n Satellite Satellite 1 473 0 450 207 0 0 chrY 8064007 8064171 -16648908 + (GAATG)n Satellite Satellite 1 164 0 852 162 3 0 chrY 8064201 8064545 -16648534 + (GAATG)n Satellite Satellite 1 345 0 1239 119 0 0 chrY 8064566 8064925 -16648154 + (GAATG)n Satellite Satellite 1 359 0 1016 132 3 6 chrY 8064940 8065475 -16647604 + (GAATG)n Satellite Satellite 1 712 0 804 163 0 0 chrY 8065517 8065765 -16647314 + (GAATG)n Satellite Satellite 1 248 0 2172 165 13 10 chrY 8065771 8066165 -16646914 - Tigger2a DNA MER2_type -39 395 1 505 214 62 24 chrY 8066204 8066384 -16646695 - MLT1I LTR MaLR -3 406 244 1773 212 49 16 chrY 8066754 8067206 -16645873 - MLT1C LTR MaLR 0 467 1 707 328 21 18 chrY 8067401 8067730 -16645349 + MLT1I LTR MaLR 5 334 -75 429 309 62 29 chrY 8067750 8068022 -16645057 + L1ME3A LINE L1 5597 5877 -293 597 106 28 28 chrY 8068367 8068547 -16644532 + (TA)n Simple_repeat Simple_repeat 1 180 0 37 39 0 0 chrY 8068547 8068598 -16644481 + AT_rich Low_complexity Low_complexity 1 51 0 617 85 34 34 chrY 8068598 8068774 -16644305 + (TTATA)n Simple_repeat Simple_repeat 5 180 0 329 75 118 0 chrY 8068741 8068902 -16644177 + (TA)n Simple_repeat Simple_repeat 1 180 0 * 286 340 65 1 chrY 8069601 8069862 -16643217 - L1MDa LINE L1 -860 1630 1397 705 259 109 47 chrY 8069912 8070033 -16643046 - L1MDa LINE L1 -4918 1201 1089 1837 152 3 34 chrY 8070033 8070330 -16642749 - AluSx SINE Alu -24 288 1 705 259 109 47 chrY 8070330 8070787 -16642292 - L1MDa LINE L1 -5030 1089 587 829 235 0 24 chrY 8070948 8071118 -16641961 + FAM SINE Alu 1 166 -9 10608 21 0 1 chrY 8071165 8073232 -16639847 - L1HS LINE L1 0 6155 4090 7117 17 1 2 chrY 8073231 8074079 -16639000 + L1HS LINE L1 5291 6139 -16 * 244 0 56 0 chrY 8074079 8074115 -16638964 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 7117 17 1 2 chrY 8074115 8074132 -16638947 + L1HS LINE L1 6139 6155 0 317 155 0 17 chrY 8074229 8074287 -16638792 - FAM SINE Alu -83 92 36 2235 113 0 25 chrY 8074418 8074822 -16638257 + AluSx SINE Alu 3 398 0 335 250 19 37 chrY 8075556 8075664 -16637415 + HAL1b LINE L1 1243 1348 0 2215 133 0 0 chrY 8075677 8075985 -16637094 + AluSx SINE Alu 1 308 -4 229 351 30 61 chrY 8076588 8076719 -16636360 + MIR SINE MIR 21 147 -115 870 113 0 0 chrY 8076720 8076853 -16636226 + (TGGA)n Simple_repeat Simple_repeat 1 133 0 2053 114 0 0 chrY 8076869 8077133 -16635946 + AluSx SINE Alu 33 296 -16 250 98 39 0 chrY 8077134 8077185 -16635894 + (TAGA)n Simple_repeat Simple_repeat 2 54 0 337 246 235 11 chrY 8077398 8077585 -16635494 - HAL1 LINE L1 -154 2353 2125 453 230 29 83 chrY 8077586 8077781 -16635298 + MER20B DNA MER1_type 1 197 -22 407 206 9 19 chrY 8077798 8077905 -16635174 - HAL1 LINE L1 -378 2129 2024 * 2378 249 103 81 chrY 8077901 8078185 -16634894 - HAL1 LINE L1 -1044 1463 1187 2173 137 10 0 chrY 8078185 8078492 -16634587 - AluSx SINE Alu -2 310 1 2378 249 103 81 chrY 8078492 8079596 -16633483 - HAL1 LINE L1 -1320 1187 45 983 281 67 66 chrY 8079636 8079988 -16633091 + L2 LINE L2 2660 3006 -307 2329 122 0 0 chrY 8079988 8080299 -16632780 - AluY SINE Alu 0 311 1 983 281 67 66 chrY 8080299 8080560 -16632519 + L2 LINE L2 3006 3265 -48 675 232 310 12 chrY 8080563 8080603 -16632476 - MLT2B1 LTR ERVL 0 520 493 234 0 0 0 chrY 8080603 8080629 -16632450 + (TG)n Simple_repeat Simple_repeat 1 26 0 675 232 310 12 chrY 8080629 8080911 -16632168 - MLT2B1 LTR ERVL -27 493 102 555 222 0 0 chrY 8080911 8081037 -16632042 + L1PB4 LINE L1 6031 6156 0 27 0 0 0 chrY 8081037 8081064 -16632015 + AT_rich Low_complexity Low_complexity 1 27 0 2325 112 0 0 chrY 8081131 8081436 -16631643 + AluY SINE Alu 1 305 -6 277 243 0 0 chrY 8081457 8081527 -16631552 - MLT2B1 LTR ERVL -450 70 1 16166 186 17 20 chrY 8081589 8085809 -16627270 + L1PA13 LINE L1 1 4209 -2588 2212 142 0 0 chrY 8085809 8086119 -16626960 - AluSx SINE Alu -2 310 1 16166 186 17 20 chrY 8086119 8087396 -16625683 + L1PA13 LINE L1 4209 5489 -1308 2118 114 37 0 chrY 8087398 8087695 -16625384 + AluSp SINE Alu 3 310 -3 435 137 0 0 chrY 8087695 8087768 -16625311 + (GA)n Simple_repeat Simple_repeat 1 73 0 333 117 0 0 chrY 8087780 8087840 -16625239 + (CAGG)n Simple_repeat Simple_repeat 2 61 0 6000 110 19 1 chrY 8087842 8089155 -16623924 + L1PA13 LINE L1 5484 6813 -1 2314 110 3 0 chrY 8090824 8091132 -16621947 - AluSx SINE Alu -1 311 3 2162 77 42 3 chrY 8092441 8092726 -16620353 + AluY SINE Alu 16 311 0 2227 68 0 7 chrY 8092805 8093086 -16619993 + AluY SINE Alu 1 279 -32 260 119 75 0 chrY 8093086 8093153 -16619926 + GA-rich Low_complexity Low_complexity 3 74 0 1907 58 0 0 chrY 8093221 8093444 -16619635 + AluY SINE Alu 1 223 -88 34897 58 41 2 chrY 8093468 8097943 -16615136 - L1P LINE L1 -1496 4650 1 1329 232 10 7 chrY 8097963 8098252 -16614827 - AluJb SINE Alu -22 290 1 637 179 72 68 chrY 8098635 8098842 -16614237 + MER3 DNA MER1_type 1 208 -1 2231 175 37 30 chrY 8098994 8099422 -16613657 + Tigger2a DNA MER2_type 1 431 -3 194 376 47 0 chrY 8099587 8099672 -16613407 + L2 LINE L2 3167 3255 -17 1078 111 0 17 chrY 8099680 8099916 -16613163 + (GGAA)n Simple_repeat Simple_repeat 1 231 0 815 261 31 0 chrY 8099947 8100142 -16612937 + MLT2B1 LTR ERVL 1 201 -319 6037 109 55 2 chrY 8100147 8101034 -16612045 - L1P3 LINE L1 -4839 1622 689 12145 106 3 14 chrY 8101037 8103626 -16609453 + L1PA7 LINE L1 3565 6154 0 547 251 0 82 chrY 8103651 8103822 -16609257 + MLT2B1 LTR ERVL 228 384 -136 * 1081 241 78 4 chrY 8103811 8104087 -16608992 + MLT2B1 LTR ERVL 275 520 0 2116 185 3 8 chrY 8104636 8105025 -16608054 + MLT1B LTR MaLR 4 390 0 1389 153 5 1 chrY 8105034 8105263 -16607816 + MLT1B LTR MaLR 162 467 0 1097 215 18 9 chrY 8105264 8105492 -16607587 + MLT1B LTR MaLR 159 388 -2 189 303 176 14 chrY 8106792 8106934 -16606145 + L2 LINE L2 1047 1211 -2103 1079 257 12 4 chrY 8106988 8107229 -16605850 + Tigger7 DNA MER2_type 1 243 -490 257 220 0 0 chrY 8107233 8107283 -16605796 + Tigger7 DNA MER2_type 2259 2308 -183 247 317 58 0 chrY 8107903 8108023 -16605056 + LTR16C LTR ERVL 365 491 0 1320 174 0 5 chrY 8108137 8108361 -16604718 + AluSg/x SINE Alu 87 309 -3 2073 138 10 56 chrY 8108522 8108912 -16604167 - L1PA16 LINE L1 -9 6157 5786 366 239 9 46 chrY 8109476 8109585 -16603494 - MLT1D LTR MaLR -399 106 2 1456 217 75 53 chrY 8109765 8109797 -16603282 + MLT1D LTR MaLR 2 32 -473 1676 150 75 31 chrY 8109797 8110156 -16602923 - THE1C LTR MaLR 0 375 1 1456 217 75 53 chrY 8110156 8110616 -16602463 + MLT1D LTR MaLR 32 505 0 2735 143 19 15 chrY 8110929 8111392 -16601687 - MER4C LTR ERV1 0 465 1 2550 126 6 1 chrY 8112078 8112467 -16600612 + MLT1B LTR MaLR 1 467 0 1138 229 4 0 chrY 8112468 8112699 -16600380 + MLT1B LTR MaLR 159 390 0 2062 132 7 7 chrY 8113914 8114210 -16598869 - AluSg1 SINE Alu -13 296 1 1900 158 14 0 chrY 8114214 8114511 -16598568 - AluSx SINE Alu -11 301 1 183 139 0 0 chrY 8114819 8114855 -16598224 + (TG)n Simple_repeat Simple_repeat 1 36 0 1509 207 29 32 chrY 8114916 8115395 -16597684 + MLT1A1 LTR MaLR 1 365 0 1034 195 9 9 chrY 8115395 8115605 -16597474 + MLT1B LTR MaLR 158 367 -23 3943 141 134 23 chrY 8115607 8116940 -16596139 - pTR5 LTR ERV1 0 2606 1524 904 231 31 0 chrY 8116965 8117190 -16595889 + MLT1B LTR MaLR 159 390 0 1828 171 31 20 chrY 8118365 8118726 -16594353 - MLT1A1 LTR MaLR 0 626 1 340 219 20 60 chrY 8118740 8118891 -16594188 + (TATATG)n Simple_repeat Simple_repeat 2 146 0 24 67 0 0 chrY 8119837 8119882 -16593197 + AT_rich Low_complexity Low_complexity 1 45 0 1662 158 4 11 chrY 8121800 8122060 -16591019 + AluSq SINE Alu 18 275 -38 452 32 16 0 chrY 8122074 8122136 -16590943 + (TAAA)n Simple_repeat Simple_repeat 2 64 0 1845 214 77 0 chrY 8122449 8122850 -16590229 - MSTB1 LTR MaLR 0 432 1 246 335 59 30 chrY 8122876 8123079 -16590000 - L2 LINE L2 -993 2321 2113 3259 177 14 67 chrY 8123195 8123925 -16589154 + LTR8 LTR ERV1 1 691 0 324 203 0 14 chrY 8124003 8124077 -16589002 + LTR30 LTR ERV1 548 620 -102 4313 155 26 19 chrY 8124216 8124820 -16588259 - MER4E LTR ERV1 0 779 167 1696 132 0 84 chrY 8124820 8125116 -16587963 + AluSx SINE Alu 29 299 -13 4313 155 26 19 chrY 8125116 8125284 -16587795 - MER4E LTR ERV1 -612 167 2 1894 117 83 6 chrY 8125336 8125698 -16587381 - LTR7 LTR ERV1 0 450 1 35661 151 38 32 chrY 8125698 8133050 -16580029 - HERVH LTR ERV1 0 7713 1 2129 133 65 57 chrY 8133050 8133523 -16579556 - LTR7 LTR ERV1 0 450 1 2406 131 30 0 chrY 8134458 8134825 -16578254 - MER41A LTR ERV1 -176 378 1 1957 188 43 35 chrY 8134828 8135380 -16577699 + LTR10E LTR ERV1 1 618 -15 1138 29 0 0 chrY 8135412 8135548 -16577531 - L1PA4 LINE L1 -935 5211 5076 7775 41 5 0 chrY 8135548 8136487 -16576592 + L1PA4 LINE L1 5213 6155 0 1242 182 8 8 chrY 8136820 8137062 -16576017 - MLT1B LTR MaLR 0 390 149 1147 193 5 9 chrY 8137069 8137287 -16575792 - MLT1B LTR MaLR -16 374 158 2194 150 27 7 chrY 8137287 8137666 -16575413 - MLT1B LTR MaLR 0 467 5 208 286 200 23 chrY 8137677 8137852 -16575227 + MIR SINE MIR 57 262 0 3856 157 2 8 chrY 8137889 8138508 -16574571 + L1PB4 LINE L1 5538 6152 -4 433 102 0 0 chrY 8138748 8138807 -16574272 + MSTA LTR MaLR 1 59 -369 399 274 11 0 chrY 8138910 8139005 -16574074 + MER5A DNA MER1_type 14 109 -80 242 302 23 0 chrY 8140596 8140682 -16572397 + (CATATA)n Simple_repeat Simple_repeat 6 93 0 378 182 51 14 chrY 8140682 8140984 -16572095 + (TAGA)n Simple_repeat Simple_repeat 1 313 0 252 244 13 26 chrY 8140997 8141099 -16571980 + (CATA)n Simple_repeat Simple_repeat 1 100 0 461 245 65 38 chrY 8141177 8141361 -16571718 + MER53 DNA DNA 1 189 0 1731 159 4 11 chrY 8141419 8141690 -16571389 + AluSx SINE Alu 11 279 -33 1095 93 6 22 chrY 8141705 8142252 -16570827 + (GAAA)n Simple_repeat Simple_repeat 1 537 0 286 125 62 0 chrY 8142820 8142900 -16570179 + (TAGA)n Simple_repeat Simple_repeat 1 85 0 712 124 47 0 chrY 8143088 8143257 -16569822 + (TCTA)n Simple_repeat Simple_repeat 2 178 0 254 170 50 28 chrY 8143268 8143409 -16569670 + (TCTA)n Simple_repeat Simple_repeat 2 145 0 535 145 50 20 chrY 8143439 8143740 -16569339 + (TCTA)n Simple_repeat Simple_repeat 1 310 0 208 147 67 0 chrY 8143775 8143850 -16569229 + (TCTA)n Simple_repeat Simple_repeat 2 81 0 235 329 0 0 chrY 8143854 8143939 -16569140 + (TATATG)n Simple_repeat Simple_repeat 6 90 0 389 208 21 0 chrY 8144150 8144246 -16568833 + (CATA)n Simple_repeat Simple_repeat 1 98 0 3976 201 31 12 chrY 8144510 8145278 -16567801 - LTR39 LTR ERV1 0 783 1 1656 226 11 25 chrY 8145555 8145923 -16567156 + MLT2D LTR ERVL 7 369 -45 630 194 0 17 chrY 8145959 8146139 -16566940 + (TA)n Simple_repeat Simple_repeat 2 178 0 322 192 50 71 chrY 8146144 8146243 -16566836 - L1MC4 LINE L1 -1337 6705 6609 229 286 0 0 chrY 8146243 8146313 -16566766 + (TA)n Simple_repeat Simple_repeat 1 70 -1101 1970 136 26 163 chrY 8146313 8146392 -16566687 - Tigger2a DNA MER2_type -2274 434 346 1761 156 17 0 chrY 8146392 8146680 -16566399 + AluSx SINE Alu 5 297 -15 1970 136 26 163 chrY 8146680 8146807 -16566272 - Tigger2a DNA MER2_type -2362 346 203 1832 164 10 0 chrY 8146807 8147100 -16565979 - AluSx SINE Alu -16 296 1 1970 136 26 163 chrY 8147100 8147394 -16565685 - Tigger2a DNA MER2_type -2505 203 2 229 286 0 0 chrY 8147394 8147414 -16565665 + (TA)n Simple_repeat Simple_repeat 69 1171 0 1606 199 0 3 chrY 8147809 8148260 -16564819 - AluJo SINE Alu 0 450 1 358 83 0 0 chrY 8148751 8148799 -16564280 + Alu SINE Alu 247 294 -6 849 192 10 5 chrY 8148799 8148992 -16564087 - L1P5 LINE L1 -686 5470 5277 849 171 0 0 chrY 8149989 8150159 -16562920 + (CA)n Simple_repeat Simple_repeat 1 170 0 1935 156 0 7 chrY 8150233 8150528 -16562551 - AluSx SINE Alu -19 293 1 1485 245 32 64 chrY 8150652 8150944 -16562135 + MLT1D LTR MaLR 24 295 -210 3540 111 82 48 chrY 8150944 8151530 -16561549 - MER4B LTR ERV1 -4 606 1 1485 245 32 64 chrY 8151530 8151735 -16561344 + MLT1D LTR MaLR 295 505 0 196 294 223 38 chrY 8152128 8152312 -16560767 + L2 LINE L2 2879 3096 -217 339 96 0 0 chrY 8152429 8152481 -16560598 + (TTAGGG)n Simple_repeat Simple_repeat 2 53 0 188 274 0 39 chrY 8152689 8152740 -16560339 - MER5B DNA MER1_type -1 177 129 245 363 24 8 chrY 8153781 8153905 -16559174 + MER5B DNA MER1_type 27 152 -26 2415 122 48 20 chrY 8153976 8154330 -16558749 + THE1B LTR MaLR 1 364 0 1063 291 104 3 chrY 8154884 8155221 -16557858 - MLT1D LTR MaLR 0 505 135 658 235 20 7 chrY 8155486 8155639 -16557440 - MLT1A1 LTR MaLR 0 365 211 1753 200 19 6 chrY 8155710 8156070 -16557009 - MLT1A1 LTR MaLR 0 365 1 1568 140 75 11 chrY 8157092 8157383 -16555696 - AluJb SINE Alu 0 308 1 804 240 91 33 chrY 8157823 8158119 -16554960 + MLT1C LTR MaLR 27 348 -119 340 195 37 12 chrY 8158144 8158226 -16554853 + MLT1D LTR MaLR 278 361 -144 703 251 51 51 chrY 8158243 8158542 -16554537 + MLT1C LTR MaLR 8 309 -158 1361 136 0 9 chrY 8158542 8158755 -16554324 + L1MA2 LINE L1 6091 6301 -3 703 251 51 51 chrY 8158755 8158770 -16554309 + MLT1C LTR MaLR 308 322 -145 269 229 0 0 chrY 8158777 8158838 -16554241 + MLT1D LTR MaLR 541 601 -25 1792 160 17 0 chrY 8158864 8159151 -16553928 + AluSx SINE Alu 1 292 -20 642 220 58 119 chrY 8161107 8161485 -16551594 + MLT1D LTR MaLR 7 361 -144 308 161 0 48 chrY 8161538 8161600 -16551479 + FLAM_A SINE Alu 75 133 0 1071 220 70 39 chrY 8161610 8161896 -16551183 + AluJo SINE Alu 2 296 -6 487 311 22 28 chrY 8161925 8162105 -16550974 + MLT1D LTR MaLR 316 494 -132 368 164 15 0 chrY 8162283 8162350 -16550729 - L1PA16 LINE L1 -13 6153 6086 633 178 7 105 chrY 8162350 8162502 -16550577 + MLT1C LTR MaLR 367 503 -2 334 261 9 9 chrY 8162961 8163072 -16550007 + LTR16C LTR ERVL 371 481 -10 35 41 0 0 chrY 8163483 8163532 -16549547 + AT_rich Low_complexity Low_complexity 1 49 0 215 98 66 0 chrY 8163596 8163657 -16549422 + (TA)n Simple_repeat Simple_repeat 2 66 0 227 220 52 46 chrY 8163675 8163743 -16549336 + (TATAA)n Simple_repeat Simple_repeat 1 67 -107 1956 130 14 3 chrY 8163743 8164028 -16549051 - AluSg SINE Alu -15 295 8 227 220 52 46 chrY 8164028 8164132 -16548947 + (TATAA)n Simple_repeat Simple_repeat 67 174 0 1927 177 3 0 chrY 8164371 8164682 -16548397 + AluJb SINE Alu 1 312 0 2321 123 23 6 chrY 8164914 8165263 -16547816 + THE1A LTR MaLR 1 355 0 3929 156 35 7 chrY 8165698 8166135 -16546944 - L1PB4 LINE L1 -17 6139 5675 1729 185 0 7 chrY 8166135 8166432 -16546647 - AluSg SINE Alu -15 295 1 3929 156 35 7 chrY 8166432 8166678 -16546401 - L1PB4 LINE L1 -481 5675 5437 1966 157 7 0 chrY 8166799 8167098 -16545981 + AluSx SINE Alu 1 301 -11 4542 140 31 70 chrY 8167226 8168041 -16545038 + LTR1 LTR ERV1 3 785 0 456 250 19 9 chrY 8168101 8168202 -16544877 + MLT1D LTR MaLR 1 102 -403 376 96 0 170 chrY 8168202 8168296 -16544783 + MADE1 DNA Mariner 1 78 -2 1074 188 309 3 chrY 8168296 8168600 -16544479 + MLT1D LTR MaLR 98 494 -11 1968 157 10 0 chrY 8168806 8169112 -16543967 - AluSx SINE Alu -3 309 1 244 178 27 27 chrY 8169745 8169818 -16543261 + A-rich Low_complexity Low_complexity 5 77 0 248 133 40 13 chrY 8169849 8169924 -16543155 + (TAGA)n Simple_repeat Simple_repeat 4 80 0 3515 143 8 21 chrY 8169925 8170455 -16542624 - MER1A DNA MER1_type 0 527 5 191 152 22 0 chrY 8170537 8170583 -16542496 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 2031 124 17 3 chrY 8170845 8171136 -16541943 + AluSx SINE Alu 1 295 -17 1021 189 64 161 chrY 8171158 8171438 -16541641 + L1MB5 LINE L1 5749 6055 -119 22503 42 0 1 chrY 8171438 8172326 -16540753 + L1PA4 LINE L1 2734 3621 -2534 2915 6 0 0 chrY 8172326 8172637 -16540442 + AluYa5 SINE Alu 1 311 0 22503 42 0 1 chrY 8172637 8175196 -16537883 + L1PA4 LINE L1 3621 6153 -2 1021 189 64 161 chrY 8175196 8175304 -16537775 + L1MB5 LINE L1 6055 6086 -88 3165 156 39 25 chrY 8175304 8175824 -16537255 + MER1A DNA MER1_type 1 527 0 1021 189 64 161 chrY 8175824 8175905 -16537174 + L1MB5 LINE L1 6086 6173 -1 1957 141 9 41 chrY 8175981 8176301 -16536778 + AluSg SINE Alu 1 310 0 2258 99 0 6 chrY 8177494 8177807 -16535272 - AluY SINE Alu 0 311 1 496 160 66 1 chrY 8178026 8178138 -16534941 + L1MB3 LINE L1 5660 5783 -400 288 0 0 0 chrY 8178153 8178185 -16534894 + (A)n Simple_repeat Simple_repeat 1 32 0 1594 161 62 44 chrY 8178185 8178333 -16534746 + L1MB3 LINE L1 5762 5906 -277 1873 184 0 0 chrY 8178333 8178632 -16534447 + AluJo SINE Alu 5 303 -9 1594 161 62 44 chrY 8178632 8178868 -16534211 + L1MB3 LINE L1 5906 6153 -30 31 0 0 0 chrY 8178882 8178913 -16534166 + AT_rich Low_complexity Low_complexity 1 31 0 263 161 18 0 chrY 8178917 8178973 -16534106 + (CA)n Simple_repeat Simple_repeat 2 58 0 1681 170 0 14 chrY 8179006 8179288 -16533791 + AluJb SINE Alu 5 282 -30 723 54 0 0 chrY 8179288 8179380 -16533699 + (TAGA)n Simple_repeat Simple_repeat 2 93 0 184 98 196 39 chrY 8180031 8180082 -16532997 + L2 LINE L2 1965 2023 -1291 24 0 0 0 chrY 8180382 8180406 -16532673 + AT_rich Low_complexity Low_complexity 1 24 0 2038 131 3 20 chrY 8180383 8180688 -16532391 - AluSx SINE Alu -9 303 4 457 236 115 7 chrY 8180731 8180879 -16532200 - MIR SINE MIR -7 255 92 1484 226 68 53 chrY 8181424 8181898 -16531181 - MLT1D LTR MaLR 0 505 25 1113 221 83 28 chrY 8181907 8182232 -16530847 + MLT1C LTR MaLR 110 452 -15 3092 143 41 19 chrY 8182911 8183427 -16529652 + MER1A DNA MER1_type 1 527 0 1019 197 32 9 chrY 8183678 8183896 -16529183 - L1MC1 LINE L1 0 6333 6111 1947 149 0 0 chrY 8183996 8184278 -16528801 + AluSx SINE Alu 1 282 -30 2192 96 13 19 chrY 8184474 8184787 -16528292 - AluY SINE Alu 0 311 1 187 320 52 31 chrY 8186724 8186821 -16526258 - L2 LINE L2 -5 3267 3169 547 282 41 0 chrY 8187040 8187210 -16525869 - L1MB5 LINE L1 -8 6166 5990 1445 199 62 10 chrY 8187497 8187655 -16525424 - AluJb SINE Alu -5 307 159 264 30 0 0 chrY 8187655 8187688 -16525391 + (TTTG)n Simple_repeat Simple_repeat 1 33 0 1445 199 62 10 chrY 8187688 8187821 -16525258 - AluJb SINE Alu -153 159 1 197 191 0 95 chrY 8187870 8187933 -16525146 - L2 LINE L2 0 3272 3216 226 121 0 0 chrY 8188942 8188975 -16524104 + Alu SINE Alu 137 169 -134 1643 156 71 45 chrY 8188975 8189327 -16523752 - LTR7 LTR ERV1 0 450 90 646 113 47 0 chrY 8189328 8189434 -16523645 - AluSp/q SINE Alu -1 312 202 604 141 0 0 chrY 8189435 8189527 -16523552 - LTR7 LTR ERV1 -358 92 1 1268 181 7 65 chrY 8189527 8189839 -16523240 + AluSq SINE Alu 30 313 0 342 0 0 0 chrY 8191742 8191780 -16521299 + (A)n Simple_repeat Simple_repeat 1 38 0 2089 108 3 0 chrY 8192577 8192863 -16520216 - AluSp SINE Alu -26 287 1 955 105 0 8 chrY 8193391 8193524 -16519555 - AluSp SINE Alu -181 132 1 180 0 0 0 chrY 8195501 8195521 -16517558 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 2516 135 8 3 chrY 8195523 8195915 -16517164 - L1PA8A LINE L1 -18 6113 5720 522 0 0 0 chrY 8196178 8196236 -16516843 + (TA)n Simple_repeat Simple_repeat 2 59 0 364 186 47 17 chrY 8197831 8198003 -16515076 + (TCTA)n Simple_repeat Simple_repeat 2 178 0 551 110 27 27 chrY 8198127 8198273 -16514806 + (TCTA)n Simple_repeat Simple_repeat 4 149 0 370 250 12 0 chrY 8198278 8198358 -16514721 + MER20 DNA MER1_type 4 84 -135 278 353 119 15 chrY 8198578 8199100 -16513979 + L2 LINE L2 2294 2869 -445 762 161 0 8 chrY 8199140 8199264 -16513815 - AluSc SINE Alu -21 288 166 496 116 0 0 chrY 8199260 8199329 -16513750 - AluS SINE Alu -234 79 11 * 905 234 23 15 chrY 8199464 8199700 -16513379 - MER20 DNA MER1_type -17 202 1 296 133 17 0 chrY 8199702 8199762 -16513317 + (CAGA)n Simple_repeat Simple_repeat 4 64 0 488 149 57 40 chrY 8199771 8199946 -16513133 + (TAGA)n Simple_repeat Simple_repeat 3 180 0 741 125 56 17 chrY 8199970 8200443 -16512636 + (TAGA)n Simple_repeat Simple_repeat 1 491 0 373 145 52 29 chrY 8200454 8200626 -16512453 + (TAGA)n Simple_repeat Simple_repeat 3 178 0 336 289 10 0 chrY 8200667 8200764 -16512315 - MER20 DNA MER1_type -1 218 121 181 304 29 39 chrY 8201121 8201223 -16511856 + L2 LINE L2 2950 3050 -263 1210 218 23 4 chrY 8201620 8201886 -16511193 - L1MB5 LINE L1 0 6174 5904 3014 127 5 5 chrY 8201918 8202344 -16510735 - MER1A DNA MER1_type 0 529 104 212 365 32 25 chrY 8202344 8202621 -16510458 - L2 LINE L2 -1034 2280 2002 368 267 23 0 chrY 8202672 8202848 -16510231 + (TA)n Simple_repeat Simple_repeat 1 180 0 25 31 0 0 chrY 8202855 8202887 -16510192 + AT_rich Low_complexity Low_complexity 1 32 0 441 221 29 20 chrY 8202889 8203294 -16509785 + (TA)n Simple_repeat Simple_repeat 1 408 0 651 169 33 12 chrY 8203314 8203653 -16509426 + (TA)n Simple_repeat Simple_repeat 1 346 0 278 209 35 9 chrY 8203678 8203793 -16509286 + (TA)n Simple_repeat Simple_repeat 2 119 0 460 141 35 12 chrY 8203877 8204047 -16509032 + (TA)n Simple_repeat Simple_repeat 1 174 0 503 130 51 10 chrY 8204061 8204481 -16508598 + (TA)n Simple_repeat Simple_repeat 1 437 0 23 54 0 0 chrY 8204675 8204712 -16508367 + AT_rich Low_complexity Low_complexity 1 37 0 1418 118 13 22 chrY 8210045 8210274 -16502805 - L1PA16 LINE L1 0 6166 5940 1872 195 37 0 chrY 8210719 8211093 -16501986 - MLT1B LTR MaLR 0 390 3 753 206 275 5 chrY 8212781 8212999 -16500080 - MER101B LTR ERV1 -51 519 243 376 234 0 47 chrY 8213012 8213119 -16499960 - MER101B LTR ERV1 -442 128 27 2440 207 40 8 chrY 8213158 8213661 -16499418 - MER74A LTR ERVL -32 526 8 207 109 18 36 chrY 8213868 8213923 -16499156 + (TTTTC)n Simple_repeat Simple_repeat 2 55 0 * 1393 189 4 31 chrY 8213921 8214201 -16498878 - AluJo SINE Alu 0 301 29 3954 162 44 21 chrY 8214531 8215283 -16497796 - L1MA8 LINE L1 -119 6172 5404 1026 188 64 108 chrY 8215295 8215609 -16497470 + AluJo SINE Alu 3 302 0 1898 134 11 0 chrY 8216831 8217114 -16495965 + AluSx SINE Alu 1 286 -26 1362 169 90 23 chrY 8217137 8217271 -16495808 - AluJo SINE Alu -28 284 160 1140 66 9 23 chrY 8217271 8217620 -16495459 + (TTC)n Simple_repeat Simple_repeat 1 344 0 1362 169 90 23 chrY 8217620 8217750 -16495329 - AluJo SINE Alu -152 160 1 201 167 0 0 chrY 8217860 8217896 -16495183 + A-rich Low_complexity Low_complexity 1 36 0 853 234 28 23 chrY 8218168 8218386 -16494693 + MER20 DNA MER1_type 1 219 0 978 66 24 12 chrY 8218402 8218569 -16494510 + (TCTA)n Simple_repeat Simple_repeat 4 172 0 817 227 0 44 chrY 8218571 8218800 -16494279 + MER20 DNA MER1_type 1 219 0 212 239 22 54 chrY 8218816 8218908 -16494171 + (TCTA)n Simple_repeat Simple_repeat 4 92 0 555 132 0 0 chrY 8218923 8219014 -16494065 + (TCTA)n Simple_repeat Simple_repeat 4 94 0 971 203 37 32 chrY 8219016 8219233 -16493846 + MER20 DNA MER1_type 1 218 -1 465 184 0 53 chrY 8219254 8219444 -16493635 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 1005 209 38 5 chrY 8219481 8219692 -16493387 + MER20 DNA MER1_type 2 219 0 22 0 0 0 chrY 8220342 8220364 -16492715 + AT_rich Low_complexity Low_complexity 1 22 0 2022 151 3 0 chrY 8220365 8220664 -16492415 + AluSx SINE Alu 1 300 -12 1190 216 50 32 chrY 8221067 8221174 -16491905 + AluJo SINE Alu 9 113 -199 343 62 16 31 chrY 8221174 8221238 -16491841 + (CAAA)n Simple_repeat Simple_repeat 4 66 0 1190 216 50 32 chrY 8221238 8221413 -16491666 + AluJo SINE Alu 113 296 -16 278 75 60 0 chrY 8224759 8224826 -16488253 + (TA)n Simple_repeat Simple_repeat 2 72 0 25 31 0 0 chrY 8224894 8224926 -16488153 + AT_rich Low_complexity Low_complexity 1 32 0 37082 48 50 2 chrY 8225461 8231315 -16481764 - L1PA2 LINE L1 0 6155 13 729 185 76 38 chrY 8231993 8232204 -16480875 - MER20 DNA MER1_type 0 219 1 212 138 92 20 chrY 8232251 8232403 -16480676 + (TAGA)n Simple_repeat Simple_repeat 4 166 0 413 188 47 0 chrY 8232415 8232564 -16480515 + (TAGA)n Simple_repeat Simple_repeat 2 157 0 330 191 40 12 chrY 8232637 8232810 -16480269 + (TAGA)n Simple_repeat Simple_repeat 3 180 0 372 22 0 0 chrY 8232818 8232863 -16480216 + (CATA)n Simple_repeat Simple_repeat 2 46 0 792 221 33 9 chrY 8232918 8233131 -16479948 - MER20 DNA MER1_type -1 218 1 546 146 0 0 chrY 8233615 8233697 -16479382 + FRAM/FAM SINE Alu 9 90 -86 470 247 57 31 chrY 8233717 8233911 -16479168 + MLT1D LTR MaLR 48 246 -259 939 226 80 32 chrY 8233998 8234374 -16478705 + MLT1C LTR MaLR 1 394 -73 18140 68 7 1 chrY 8234431 8240441 -16472638 - L1PA4 LINE L1 0 6155 1 236 212 15 30 chrY 8240441 8240507 -16472572 + MLT1C LTR MaLR 403 467 0 1618 186 7 0 chrY 8241009 8241283 -16471796 + AluJo SINE Alu 20 295 -17 926 249 80 42 chrY 8241554 8242004 -16471075 - MLT1C LTR MaLR 0 467 1 249 164 27 12 chrY 8242016 8242146 -16470933 - MLT1D LTR MaLR -146 359 200 724 174 0 15 chrY 8242163 8242295 -16470784 - AluSp/q SINE Alu -9 304 175 306 237 167 26 chrY 8242303 8242459 -16470620 - MLT1D LTR MaLR -327 178 1 403 298 87 19 chrY 8242711 8242872 -16470207 + MIR SINE MIR 88 259 -3 21 0 0 0 chrY 8244224 8244245 -16468834 + AT_rich Low_complexity Low_complexity 1 21 0 33244 78 3 95 chrY 8244245 8249158 -16463921 - L1PA5 LINE L1 -9 6145 785 7325 40 2 1 chrY 8249158 8250458 -16462621 + L1PA3 LINE L1 4855 6155 0 33244 78 3 95 chrY 8250458 8251079 -16462000 - L1PA5 LINE L1 -5369 785 1355 2348 60 3 0 chrY 8251079 8251377 -16461702 - L1PA3 LINE L1 -1 6154 5856 33244 78 3 95 chrY 8251377 8252611 -16460468 - L1PA5 LINE L1 -4798 1356 11 384 169 0 0 chrY 8254788 8254865 -16458214 + (CAT)n Simple_repeat Simple_repeat 3 79 0 24 0 0 0 chrY 8255326 8255350 -16457729 + AT_rich Low_complexity Low_complexity 1 24 0 484 290 20 27 chrY 8255954 8256127 -16456952 - MIR SINE MIR -55 153 32 425 238 26 104 chrY 8256374 8256567 -16456512 - MER5B DNA MER1_type 0 178 1 24 53 0 0 chrY 8256972 8257010 -16456069 + AT_rich Low_complexity Low_complexity 1 38 0 231 229 16 0 chrY 8257766 8257827 -16455252 + MLT1J2 LTR MaLR 64 125 -325 1948 128 13 36 chrY 8258314 8258619 -16454460 - AluSg SINE Alu -12 298 1 24 53 0 0 chrY 8258971 8259009 -16454070 + AT_rich Low_complexity Low_complexity 1 38 0 543 184 22 0 chrY 8259702 8259838 -16453241 + GA-rich Low_complexity Low_complexity 1 139 0 2128 128 7 3 chrY 8259970 8260274 -16452805 - AluSx SINE Alu -5 307 3 398 253 0 63 chrY 8260792 8260950 -16452129 - L1ME LINE L1 -474 5647 5500 275 211 0 13 chrY 8261014 8261090 -16451989 + CT-rich Low_complexity Low_complexity 2 76 0 283 265 15 0 chrY 8261138 8261206 -16451873 - MER5B DNA MER1_type -109 69 1 253 217 24 0 chrY 8261453 8261536 -16451543 + CT-rich Low_complexity Low_complexity 2 86 0 1262 145 60 0 chrY 8261626 8261874 -16451205 - L1MA5A LINE L1 -6 6291 6029 2066 89 0 0 chrY 8262068 8262348 -16450731 + L1PA5 LINE L1 5875 6154 0 21 36 0 0 chrY 8262449 8262477 -16450602 + AT_rich Low_complexity Low_complexity 1 28 0 1247 233 39 21 chrY 8262485 8262768 -16450311 + AluJo SINE Alu 1 288 -24 246 107 54 0 chrY 8262768 8262824 -16450255 + (TA)n Simple_repeat Simple_repeat 1 59 0 1033 146 50 5 chrY 8262919 8263225 -16449854 - THE1C LTR MaLR 0 375 7 2557 21 0 0 chrY 8263874 8264192 -16448887 + AluY SINE Alu 1 318 0 225 213 0 0 chrY 8264443 8264490 -16448589 - MER63 DNA MER1_type -333 728 682 1300 114 0 0 chrY 8265181 8265382 -16447697 - L1PA14 LINE L1 -358 5803 5603 2371 86 3 65 chrY 8265382 8265765 -16447314 + L1PA14 LINE L1 5800 6159 -2 1503 229 7 0 chrY 8266573 8266883 -16446196 - AluJo SINE Alu 0 312 1 624 114 13 82 chrY 8268882 8268908 -16444171 + L1PA15 LINE L1 5306 5332 -834 1814 173 7 3 chrY 8268908 8269208 -16443871 + AluSx SINE Alu 1 301 -11 624 114 13 82 chrY 8269208 8269339 -16443740 + L1PA15 LINE L1 5332 5452 -714 * 18104 69 3 1 chrY 8269336 8271874 -16441205 - L1PA4 LINE L1 -1873 4273 1730 8127 55 4 3 chrY 8271867 8273714 -16439365 + L1PA4 LINE L1 4292 6142 -13 * 3745 163 24 9 chrY 8273760 8274458 -16438621 + L1PA15 LINE L1 5442 6150 -15 195 100 0 0 chrY 8274468 8274498 -16438581 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 22 0 0 0 chrY 8274735 8274757 -16438322 + AT_rich Low_complexity Low_complexity 1 22 0 316 151 0 0 chrY 8274825 8274878 -16438201 - L1MC/D LINE L1 -490 5843 5791 533 222 17 0 chrY 8274886 8275003 -16438076 + L1MC1 LINE L1 6215 6333 0 21 71 0 0 chrY 8275019 8275061 -16438018 + AT_rich Low_complexity Low_complexity 1 42 0 348 24 0 0 chrY 8275621 8275662 -16437417 + (TG)n Simple_repeat Simple_repeat 2 42 0 1869 123 58 0 chrY 8275672 8275949 -16437130 - AluSq SINE Alu -20 293 1 38659 71 2 1 chrY 8276241 8282367 -16430712 + L1PA3 LINE L1 13 6149 -6 11277 56 3 0 chrY 8282383 8284570 -16428509 + L1PA4 LINE L1 3950 6139 -16 649 192 13 32 chrY 8284950 8285106 -16427973 - LTR22B LTR ERVK 0 492 340 * 1070 135 49 0 chrY 8285091 8285276 -16427803 - LTR22B LTR ERVK -294 198 5 3239 174 31 3 chrY 8285613 8286200 -16426879 + LTR26 LTR ERV1 1 603 0 835 216 44 0 chrY 8286346 8286527 -16426552 + MER5A DNA MER1_type 1 189 0 1292 205 3 68 chrY 8286828 8287150 -16425929 + AluJo SINE Alu 1 301 -11 1147 213 4 4 chrY 8287271 8287496 -16425583 + LTR26 LTR ERV1 379 603 0 445 256 99 50 chrY 8287837 8288201 -16424878 - MER20B DNA MER1_type -110 673 292 702 187 27 7 chrY 8288201 8288351 -16424728 + L1MA4 LINE L1 5846 5998 -302 21 0 0 0 chrY 8288665 8288686 -16424393 + AT_rich Low_complexity Low_complexity 1 21 0 786 209 31 7 chrY 8288816 8289090 -16423989 - L1MA7 LINE L1 -1 6290 5893 1027 234 31 73 chrY 8289270 8289575 -16423504 - MLT1A1 LTR MaLR 0 365 78 1589 180 18 85 chrY 8289575 8289964 -16423115 - MLT1A1 LTR MaLR 0 365 3 1027 234 31 73 chrY 8289964 8290039 -16423040 - MLT1A1 LTR MaLR -287 78 1 2048 117 0 78 chrY 8290676 8290891 -16422188 + L1PB4 LINE L1 5607 5776 -380 2022 141 42 36 chrY 8290891 8291252 -16421827 - THE1B LTR MaLR 0 364 2 2048 117 0 78 chrY 8291252 8291446 -16421633 + L1PB4 LINE L1 5776 5984 -172 2607 127 24 12 chrY 8291562 8291987 -16421092 + L1PB2 LINE L1 5720 6149 -2 478 139 0 0 chrY 8292080 8292166 -16420913 - L1PB1 LINE L1 -3 6148 6063 2221 107 8 46 chrY 8292166 8292299 -16420780 + L1PB1 LINE L1 5696 5833 -318 2016 143 3 0 chrY 8292299 8292600 -16420479 + AluSc SINE Alu 1 302 -7 2221 107 8 46 chrY 8292600 8292857 -16420222 + L1PB1 LINE L1 5833 6071 -80 509 229 28 16 chrY 8292883 8293040 -16420039 + L1MB3 LINE L1 6019 6184 0 228 316 168 19 chrY 8293514 8293669 -16419410 - MIR SINE MIR -56 206 29 28615 120 30 19 chrY 8293907 8298802 -16414277 + L1PA6 LINE L1 11 4959 -1187 6492 81 10 0 chrY 8298802 8299766 -16413313 + L1PA6 LINE L1 5174 6146 -8 1436 214 42 6 chrY 8299928 8300264 -16412815 - MLT1A1 LTR MaLR -15 350 3 1760 178 20 3 chrY 8300288 8300591 -16412488 + AluSx SINE Alu 1 308 -4 2051 139 0 3 chrY 8300591 8300884 -16412195 + AluSc SINE Alu 1 293 -16 2401 253 18 8 chrY 8301532 8302138 -16410941 - MER82 DNA MER2_type 0 653 42 1521 122 5 0 chrY 8302138 8302360 -16410719 - AluSc SINE Alu -7 302 80 805 230 129 94 chrY 8302841 8302894 -16410185 - MLT1D LTR MaLR 0 505 455 2402 140 37 0 chrY 8302894 8302948 -16410131 + L1PB1 LINE L1 5731 5782 -369 318 50 0 0 chrY 8302948 8302988 -16410091 + (CA)n Simple_repeat Simple_repeat 2 41 0 2402 140 37 0 chrY 8302988 8303339 -16409740 + L1PB1 LINE L1 5782 6151 0 805 230 129 94 chrY 8303339 8303720 -16409359 - MLT1D LTR MaLR -50 455 56 1281 204 43 43 chrY 8303720 8304072 -16409007 - MLT1A2 LTR MaLR 0 374 23 1928 158 31 19 chrY 8304077 8304437 -16408642 - THE1B LTR MaLR 0 364 1 198 367 31 41 chrY 8305191 8305289 -16407790 - L2 LINE L2 0 3313 3217 1134 240 62 35 chrY 8306130 8306564 -16406515 + MLT1C LTR MaLR 22 467 0 6373 88 6 0 chrY 8307262 8308333 -16404746 - L1PA7 LINE L1 -16 6138 5063 1589 185 104 32 chrY 8308920 8309436 -16403643 + MLT2A2 LTR ERVL 1 554 0 250 317 161 19 chrY 8309793 8309998 -16403081 - L2 LINE L2 0 3313 3080 1834 132 68 11 chrY 8310346 8310627 -16402452 - AluSx SINE Alu -13 299 3 618 229 6 34 chrY 8310765 8310842 -16402237 - L1MB7 LINE L1 -300 5884 5806 2201 126 73 59 chrY 8310842 8311077 -16402002 + MSTA LTR MaLR 1 246 -182 2211 94 3 0 chrY 8311077 8311374 -16401705 + AluY SINE Alu 1 298 -13 2201 126 73 59 chrY 8311374 8311560 -16401519 + MSTA LTR MaLR 246 428 0 618 229 6 34 chrY 8311560 8311661 -16401418 - L1MB7 LINE L1 -378 5806 5711 401 185 120 0 chrY 8311672 8311780 -16401299 + L1MB4 LINE L1 6035 6155 -25 2189 93 19 26 chrY 8311838 8312150 -16400929 + AluY SINE Alu 1 310 -1 1743 187 3 10 chrY 8312190 8312495 -16400584 + AluSx SINE Alu 1 303 -9 290 260 7 0 chrY 8312624 8312778 -16400301 + CT-rich Low_complexity Low_complexity 2 156 0 444 243 0 0 chrY 8312830 8312978 -16400101 + CT-rich Low_complexity Low_complexity 2 149 0 21 36 0 0 chrY 8313269 8313297 -16399782 + AT_rich Low_complexity Low_complexity 1 28 0 266 264 12 12 chrY 8314176 8314339 -16398740 + (CATATA)n Simple_repeat Simple_repeat 2 164 0 502 268 12 27 chrY 8314340 8314686 -16398393 + (TA)n Simple_repeat Simple_repeat 1 340 0 330 220 0 80 chrY 8314702 8314802 -16398277 + L1MC4 LINE L1 6612 6703 -1339 310 216 18 36 chrY 8314846 8315013 -16398066 + (CATATA)n Simple_repeat Simple_repeat 5 168 0 333 282 17 17 chrY 8315014 8315131 -16397948 + (CA)n Simple_repeat Simple_repeat 2 118 0 544 259 93 5 chrY 8316681 8316874 -16396205 - MER20 DNA MER1_type -9 210 1 540 0 0 0 chrY 8316885 8316945 -16396134 + (TAGA)n Simple_repeat Simple_repeat 1 60 0 1865 166 33 28 chrY 8316945 8317306 -16395773 + THE1B LTR MaLR 2 364 0 293 191 33 26 chrY 8317307 8317459 -16395620 + (TAGA)n Simple_repeat Simple_repeat 4 156 0 742 196 50 17 chrY 8317507 8317686 -16395393 - MER20 DNA MER1_type -17 202 18 1877 179 0 6 chrY 8317870 8318183 -16394896 + AluSx SINE Alu 1 311 -1 365 188 12 0 chrY 8319116 8319201 -16393878 + (CATA)n Simple_repeat Simple_repeat 4 89 0 303 276 46 0 chrY 8319144 8319231 -16393848 - L1MC4 LINE L1 -1338 6704 6614 * 2260 94 0 16 chrY 8319287 8319596 -16393483 + AluY SINE Alu 1 304 -7 7628 92 41 23 chrY 8319651 8321497 -16391582 + L1PA6 LINE L1 4299 6153 -1 1078 182 84 16 chrY 8323112 8323394 -16389685 + LTR47A LTR ERVL 2 364 -88 192 40 0 0 chrY 8323394 8323419 -16389660 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1078 182 84 16 chrY 8323419 8323512 -16389567 + LTR47A LTR ERVL 364 449 -3 298 269 14 14 chrY 8324543 8324839 -16388240 + CT-rich Low_complexity Low_complexity 1 296 0 268 241 30 8 chrY 8324854 8324987 -16388092 + CT-rich Low_complexity Low_complexity 2 137 0 464 250 14 7 chrY 8325030 8325313 -16387766 + CT-rich Low_complexity Low_complexity 1 284 0 1634 214 91 8 chrY 8325916 8326299 -16386780 - MLT1D LTR MaLR -90 415 1 291 188 42 0 chrY 8326300 8326348 -16386731 - MLT1D LTR MaLR -455 50 1 289 188 42 0 chrY 8326349 8326397 -16386682 - MLT1D LTR MaLR -455 50 1 299 133 44 0 chrY 8326401 8326446 -16386633 - MLT1D LTR MaLR -458 47 1 254 188 42 0 chrY 8326447 8326495 -16386584 - MLT1D LTR MaLR -455 50 1 225 154 39 77 chrY 8326542 8326594 -16386485 - MLT1D LTR MaLR -455 50 1 303 196 0 0 chrY 8326594 8326645 -16386434 - MLT1D LTR MaLR -454 51 1 3089 190 38 3 chrY 8326942 8327526 -16385553 - L1PB4 LINE L1 -17 6139 5536 1360 240 59 84 chrY 8328031 8328339 -16384740 + MER77 LTR ERV1 41 355 -325 2199 170 78 5 chrY 8328339 8328738 -16384341 + MSTA LTR MaLR 1 428 0 1360 240 59 84 chrY 8328738 8329027 -16384052 + MER77 LTR ERV1 355 673 -7 1726 172 0 38 chrY 8329162 8329476 -16383603 + AluJo SINE Alu 11 312 0 667 181 17 14 chrY 8329476 8329830 -16383249 + GA-rich Low_complexity Low_complexity 1 355 0 1091 68 17 23 chrY 8329843 8330019 -16383060 + (GAAA)n Simple_repeat Simple_repeat 4 178 0 1601 207 11 28 chrY 8330387 8330750 -16382329 + L1MB8 LINE L1 5782 6138 -40 1451 198 38 0 chrY 8330750 8331013 -16382066 + AluJo SINE Alu 1 273 -39 1775 53 0 0 chrY 8331013 8331221 -16381858 + L1PA4 LINE L1 5947 6154 -1 26 0 0 0 chrY 8331221 8331247 -16381832 + AT_rich Low_complexity Low_complexity 1 26 0 317 123 0 35 chrY 8331251 8331308 -16381771 + L1MB8 LINE L1 6124 6178 0 207 382 42 14 chrY 8332044 8332188 -16380891 - MIR3 SINE MIR -36 172 25 721 238 12 0 chrY 8332287 8332451 -16380628 - L1PB4 LINE L1 -5 6151 5986 1590 168 49 0 chrY 8332578 8332864 -16380215 - MLT1A1 LTR MaLR -2 363 64 1722 190 20 72 chrY 8332911 8333316 -16379763 - MLT1B LTR MaLR -4 386 3 638 181 87 0 chrY 8333628 8333766 -16379313 + MLT2D LTR ERVL 144 293 -121 1778 250 86 26 chrY 8333824 8334405 -16378674 + MLT1E3 LTR MaLR 1 616 -8 4003 102 56 0 chrY 8334415 8334973 -16378106 + L1PA10 LINE L1 5576 6164 -4 733 230 0 0 chrY 8335266 8335392 -16377687 - FLAM_C SINE Alu -7 126 1 201 121 0 0 chrY 8335469 8335502 -16377577 + (TTA)n Simple_repeat Simple_repeat 2 34 0 2100 128 0 10 chrY 8335573 8335877 -16377202 + AluY SINE Alu 1 301 -10 207 0 0 0 chrY 8335879 8335902 -16377177 + (GGAGAA)n Simple_repeat Simple_repeat 3 25 0 1629 175 0 36 chrY 8336046 8336355 -16376724 + AluJo SINE Alu 1 298 -14 944 202 77 37 chrY 8336696 8336984 -16376095 - MSTD LTR MaLR -1 395 49 1906 161 7 0 chrY 8336984 8337282 -16375797 - AluSx SINE Alu -12 300 1 944 202 77 37 chrY 8337282 8337333 -16375746 - MSTD LTR MaLR -347 49 1 974 239 12 36 chrY 8337517 8337768 -16375311 + AluJo SINE Alu 14 258 -54 1188 274 17 59 chrY 8338639 8338750 -16374329 + MER44D DNA MER2_type 1 115 -2472 239 0 32 0 chrY 8338750 8338781 -16374298 + (TTTA)n Simple_repeat Simple_repeat 3 34 0 1979 154 0 0 chrY 8338783 8339063 -16374016 - AluSx SINE Alu -32 280 1 1188 274 17 59 chrY 8339063 8339306 -16373773 + MER44D DNA MER2_type 116 343 -362 1565 177 41 38 chrY 8339590 8339934 -16373145 + Tigger7 DNA MER2_type 2139 2483 -4 2191 121 0 0 chrY 8340087 8340385 -16372694 + AluY SINE Alu 1 298 -13 1757 174 10 3 chrY 8340408 8340706 -16372373 - AluSx SINE Alu -12 300 1 1014 139 35 60 chrY 8341233 8341434 -16371645 + MLT2A2 LTR ERVL 258 453 0 3263 119 80 25 chrY 8342358 8342919 -16370160 + MER4B LTR ERV1 10 601 -9 3947 155 19 13 chrY 8343478 8343601 -16369478 - MER41B LTR ERV1 0 635 514 1848 152 41 0 chrY 8343601 8343891 -16369188 + AluSx SINE Alu 1 302 -10 3947 155 19 13 chrY 8343891 8344398 -16368681 - MER41B LTR ERV1 -121 514 1 366 284 0 0 chrY 8344453 8344534 -16368545 + Tigger4(Zombi) DNA MER2_type 1 81 -2650 1592 205 0 13 chrY 8344592 8344894 -16368185 - AluJo SINE Alu -14 298 1 431 97 0 14 chrY 8344895 8344967 -16368112 + Tigger4(Zombi) DNA MER2_type 2480 2550 -181 1416 206 25 4 chrY 8344967 8345248 -16367831 + AluJo SINE Alu 1 287 -25 894 189 11 6 chrY 8345293 8345473 -16367606 + Tigger4(Zombi) DNA MER2_type 2545 2725 -6 1574 182 0 44 chrY 8345879 8346198 -16366881 + AluJb SINE Alu 1 306 0 186 103 0 0 chrY 8346373 8346402 -16366677 + (TAA)n Simple_repeat Simple_repeat 2 30 0 2278 135 82 15 chrY 8346731 8347072 -16366007 - THE1B LTR MaLR 0 364 1 2773 42 0 0 chrY 8347982 8348295 -16364784 + L1PA3 LINE L1 5840 6152 -3 481 149 22 39 chrY 8348434 8348671 -16364408 + CT-rich Low_complexity Low_complexity 1 233 0 500 213 17 33 chrY 8348725 8349525 -16363554 + CT-rich Low_complexity Low_complexity 1 786 0 212 200 18 0 chrY 8349518 8349573 -16363506 + C-rich Low_complexity Low_complexity 3 58 0 * 226 223 32 11 chrY 8349573 8349667 -16363412 + T-rich Low_complexity Low_complexity 4 99 0 363 177 9 35 chrY 8349681 8349794 -16363285 + CT-rich Low_complexity Low_complexity 4 113 0 331 258 13 7 chrY 8349815 8349970 -16363109 + CT-rich Low_complexity Low_complexity 1 156 0 1250 234 42 60 chrY 8350327 8350711 -16362368 + MLT1B LTR MaLR 1 377 -13 1156 209 7 9 chrY 8350707 8350941 -16362138 + MLT1B LTR MaLR 159 396 0 * 1130 154 9 69 chrY 8350942 8351175 -16361904 + MLT1B LTR MaLR 159 377 -13 455 102 8 211 chrY 8351817 8351890 -16361189 - Tigger5 DNA MER2_type 0 2323 2285 1557 204 13 3 chrY 8351890 8352198 -16360881 + AluJo SINE Alu 1 311 -1 455 102 8 211 chrY 8352198 8352252 -16360827 - Tigger5 DNA MER2_type -38 2285 2222 264 313 56 25 chrY 8352251 8352411 -16360668 - LTR16C LTR ERVL -29 462 298 * 1178 215 71 62 chrY 8352657 8353042 -16360037 + MLT1B LTR MaLR 4 396 0 369 351 5 39 chrY 8353134 8353339 -16359740 - LTR16C LTR ERVL -233 258 61 454 225 153 80 chrY 8353388 8353753 -16359326 + L1ME3A LINE L1 4883 5274 -872 586 281 47 71 chrY 8353841 8354023 -16359056 + L1ME3A LINE L1 5385 5570 -596 1920 126 10 40 chrY 8354023 8354325 -16358754 - AluSx SINE Alu -19 293 1 586 281 47 71 chrY 8354325 8354679 -16358400 + L1ME3A LINE L1 5570 5919 -247 844 101 0 17 chrY 8354710 8354851 -16358228 - L1PA10 LINE L1 0 6168 6035 1893 169 54 17 chrY 8354851 8355205 -16357874 - L1PB4 LINE L1 -8 6148 5782 182 171 24 0 chrY 8355205 8355246 -16357833 + (TATATG)n Simple_repeat Simple_repeat 5 46 0 264 283 33 0 chrY 8355247 8355339 -16357740 + L1MC4 LINE L1 6614 6708 -1334 * 1092 154 53 8 chrY 8355316 8355521 -16357558 - L1M4 LINE L1 -364 5792 5579 1648 179 7 40 chrY 8355870 8356030 -16357049 + AluJo SINE Alu 2 149 -163 2758 122 47 0 chrY 8356030 8356439 -16356640 - MSTA LTR MaLR 0 428 1 1648 179 7 40 chrY 8356439 8356579 -16356500 + AluJo SINE Alu 149 292 -20 1479 207 29 4 chrY 8357286 8357566 -16355513 + AluJo SINE Alu 1 287 -25 225 305 0 0 chrY 8358061 8358120 -16354959 - LTR16A LTR ERVL -7 443 385 260 193 61 26 chrY 8358389 8358503 -16354576 + (TAGA)n Simple_repeat Simple_repeat 4 121 0 618 14 0 0 chrY 8358508 8358579 -16354500 + (ATATG)n Simple_repeat Simple_repeat 5 75 0 382 49 33 0 chrY 8358579 8358640 -16354439 + (TGGA)n Simple_repeat Simple_repeat 2 64 0 533 105 35 35 chrY 8358659 8358830 -16354249 + (TAGA)n Simple_repeat Simple_repeat 4 174 0 427 119 36 42 chrY 8358855 8359023 -16354056 + (TAGA)n Simple_repeat Simple_repeat 4 170 0 209 111 44 0 chrY 8359058 8359103 -16353976 + (TAGA)n Simple_repeat Simple_repeat 3 49 0 279 0 0 0 chrY 8359862 8359893 -16353186 + (TG)n Simple_repeat Simple_repeat 2 32 0 1111 188 34 21 chrY 8360003 8360237 -16352842 - AluJo SINE Alu -29 283 47 1450 211 50 0 chrY 8360292 8360591 -16352488 - MER2 DNA MER2_type -31 314 1 1453 181 3 64 chrY 8361043 8361357 -16351722 + AluJo SINE Alu 12 306 -6 567 135 0 0 chrY 8361357 8361453 -16351626 + (GGAA)n Simple_repeat Simple_repeat 1 96 0 1446 193 65 0 chrY 8362635 8362910 -16350169 + AluJb SINE Alu 1 293 -19 7088 55 1 0 chrY 8362945 8363775 -16349304 + L1PA4 LINE L1 5323 6153 -2 26 0 0 0 chrY 8363775 8363801 -16349278 + AT_rich Low_complexity Low_complexity 1 26 0 214 114 0 0 chrY 8365006 8365041 -16348038 - L2 LINE L2 -3 3269 3235 2191 179 25 6 chrY 8365272 8365629 -16347450 - THE1B LTR MaLR 0 364 1 618 241 97 0 chrY 8365659 8365804 -16347275 + AluSg/x SINE Alu 138 296 -16 2738 115 13 68 chrY 8366029 8366569 -16346510 + L1PA6 LINE L1 3840 4349 -1797 6620 74 12 2 chrY 8366569 8368085 -16344994 + L1PA6 LINE L1 4636 6154 0 464 236 9 0 chrY 8368252 8368358 -16344721 - Tigger2 DNA MER2_type -11 2707 2601 375 204 48 12 chrY 8368442 8368609 -16344470 + (TA)n Simple_repeat Simple_repeat 2 174 0 41 66 0 0 chrY 8368614 8368690 -16344389 + AT_rich Low_complexity Low_complexity 1 76 0 1465 164 70 32 chrY 8368775 8369088 -16343991 - Tigger2 DNA MER2_type -109 2609 1 2575 50 0 0 chrY 8369116 8369415 -16343664 + AluY SINE Alu 1 299 -12 254 261 46 0 chrY 8369503 8369633 -16343446 + (TA)n Simple_repeat Simple_repeat 1 136 0 1861 156 0 0 chrY 8369771 8370046 -16343033 - AluSx SINE Alu -19 293 19 536 253 39 39 chrY 8370070 8370248 -16342831 - MER20 DNA MER1_type -33 186 9 579 163 0 113 chrY 8370539 8370553 -16342526 + LTR62 LTR ERVK 1 15 -704 2076 173 14 6 chrY 8370553 8370912 -16342167 - THE1B LTR MaLR -2 362 1 579 163 0 113 chrY 8370912 8371057 -16342022 + LTR62 LTR ERVK 15 142 -577 230 186 0 0 chrY 8371057 8371100 -16341979 + LTR30 LTR ERV1 1 43 -679 704 213 25 31 chrY 8371100 8371374 -16341705 + LTR12 LTR ERV1 62 234 -480 2463 58 0 0 chrY 8371413 8371723 -16341356 + L1PA3 LINE L1 5843 6152 -3 288 279 0 0 chrY 8371748 8371816 -16341263 + MER106B DNA MER1_type 1 68 -991 39635 52 2 2 chrY 8371830 8377826 -16335253 + L1PA3 LINE L1 127 6127 -28 216 67 0 0 chrY 8377831 8377861 -16335218 + (TAAAA)n Simple_repeat Simple_repeat 1 30 0 865 220 0 0 chrY 8377889 8378062 -16335017 + L1PA15 LINE L1 5993 6165 0 982 139 6 12 chrY 8378535 8378708 -16334371 - L1PA13 LINE L1 0 6163 5992 1731 80 0 0 chrY 8379444 8379714 -16333365 + L1PA7 LINE L1 5912 6181 0 1954 166 3 0 chrY 8379792 8380093 -16332986 - AluSx SINE Alu -10 302 1 237 33 0 0 chrY 8381008 8381038 -16332041 + (TG)n Simple_repeat Simple_repeat 2 31 0 207 139 0 0 chrY 8381367 8381403 -16331676 + (TC)n Simple_repeat Simple_repeat 1 36 0 180 273 26 78 chrY 8381434 8381511 -16331568 - L3 LINE CR1 0 1577 1505 691 282 98 25 chrY 8381570 8381967 -16331112 - MER77 LTR ERV1 -7 598 173 379 250 92 0 chrY 8382015 8382135 -16330944 - MER77 LTR ERV1 -406 199 69 236 257 29 0 chrY 8382325 8382395 -16330684 + MER96B DNA MER1_type? 345 416 -1 311 111 0 19 chrY 8382427 8382481 -16330598 + (TA)n Simple_repeat Simple_repeat 2 54 0 208 184 54 0 chrY 8382528 8382675 -16330404 + (TA)n Simple_repeat Simple_repeat 1 155 0 209 33 33 0 chrY 8382756 8382786 -16330293 + (TA)n Simple_repeat Simple_repeat 1 31 0 267 247 12 12 chrY 8382810 8382891 -16330188 - Tigger5 DNA MER2_type 0 2323 2243 792 173 0 23 chrY 8382988 8383121 -16329958 + FLAM_C SINE Alu 1 130 -3 1432 228 10 3 chrY 8383135 8383429 -16329650 + AluJo SINE Alu 1 296 -16 255 152 0 0 chrY 8383464 8383510 -16329569 + (CATA)n Simple_repeat Simple_repeat 3 48 0 1777 166 85 39 chrY 8383547 8383982 -16329097 - LTR2B LTR ERV1 0 490 36 9269 86 5 1 chrY 8384005 8385318 -16327761 - Harlequin LTR ERV1 0 6896 5578 1098 96 0 0 chrY 8385320 8385456 -16327623 + AluY SINE Alu 1 136 -175 10556 76 16 3 chrY 8385460 8386899 -16326180 - Harlequin LTR ERV1 -1943 4953 3496 20035 91 57 39 chrY 8386899 8390217 -16322862 - Harlequin LTR ERV1 -3517 3379 1 1295 234 75 35 chrY 8390221 8390645 -16322434 - LTR2B LTR ERV1 -16 474 34 421 290 6 19 chrY 8390720 8390839 -16322240 - MER96B DNA MER1_type? -5 412 294 1979 155 7 0 chrY 8390839 8391136 -16321943 + AluSx SINE Alu 1 299 -13 421 290 6 19 chrY 8391136 8391178 -16321901 - MER96B DNA MER1_type? -123 294 253 1985 142 36 0 chrY 8391445 8391747 -16321332 - AluSp SINE Alu 0 313 1 1571 214 72 2 chrY 8391853 8392268 -16320811 + L1MC3 LINE L1 7325 7768 -17 1391 197 7 36 chrY 8392275 8392579 -16320500 + AluJb SINE Alu 2 296 -16 576 207 95 18 chrY 8393042 8393211 -16319868 - MER34C LTR ERV1 -3 582 401 * 2100 155 61 26 chrY 8393203 8393630 -16319449 - MER4B LTR ERV1 -160 450 9 341 239 26 52 chrY 8393838 8393989 -16319090 - L1MB7 LINE L1 -10 6174 6025 1435 142 77 0 chrY 8394037 8394297 -16318782 + MER4E LTR ERV1 1 280 -499 4287 124 18 137 chrY 8394298 8395773 -16317306 - pTR5 LTR ERV1 0 2606 1524 2753 147 26 30 chrY 8395773 8396278 -16316801 + MER4E LTR ERV1 277 779 0 507 229 39 56 chrY 8396303 8396482 -16316597 + LTR8A LTR ERV1 298 473 -254 543 213 67 0 chrY 8396498 8396662 -16316417 - L1MB7 LINE L1 -190 5988 5814 1430 175 38 16 chrY 8396679 8396994 -16316085 - L1MC1 LINE L1 0 6333 6012 3410 113 49 6 chrY 8396994 8397525 -16315554 + MER41A LTR ERV1 1 554 0 1948 156 39 28 chrY 8398529 8398889 -16314190 - THE1B LTR MaLR 0 364 1 419 222 26 0 chrY 8399155 8399308 -16313771 + (TA)n Simple_repeat Simple_repeat 2 158 0 652 226 5 38 chrY 8399320 8399335 -16313744 - MLT1C LTR MaLR -112 355 341 1790 158 32 45 chrY 8399335 8399715 -16313364 - THE1C LTR MaLR 0 375 1 652 226 5 38 chrY 8399715 8399885 -16313194 - MLT1C LTR MaLR -126 341 176 855 119 0 0 chrY 8399905 8400023 -16313056 - AluSq/x SINE Alu -194 118 1 636 173 73 45 chrY 8400023 8400202 -16312877 - MLT1C LTR MaLR -281 186 3 1943 137 37 7 chrY 8400574 8400874 -16312205 - AluSx SINE Alu -3 309 1 1543 199 3 34 chrY 8400979 8401301 -16311778 - AluJb SINE Alu 0 312 1 1773 192 0 0 chrY 8401618 8401915 -16311164 + AluJo SINE Alu 1 297 -15 1846 175 3 0 chrY 8402214 8402505 -16310574 + AluSx SINE Alu 1 292 -20 1029 213 136 37 chrY 8402926 8403199 -16309880 - AluJb SINE Alu -1 311 12 16648 56 3 3 chrY 8405162 8408083 -16304996 - L1PA5 LINE L1 -6 6148 3228 6636 74 34 0 chrY 8408086 8409046 -16304033 + L1PA5 LINE L1 2224 3216 -2930 240 35 0 0 chrY 8409554 8409583 -16303496 + (TC)n Simple_repeat Simple_repeat 2 30 0 2195 106 3 7 chrY 8409653 8409955 -16303124 + AluSg SINE Alu 1 301 -9 854 44 0 0 chrY 8410091 8410204 -16302875 - L1PA3 LINE L1 -186 5969 5857 1530 43 0 0 chrY 8410204 8410388 -16302691 + L1PA3 LINE L1 5968 6153 -2 237 182 18 0 chrY 8410411 8410466 -16302613 + A-rich Low_complexity Low_complexity 4 59 0 241 345 82 9 chrY 8410660 8410770 -16302309 - MIR3 SINE MIR -8 200 83 1615 194 0 35 chrY 8410880 8411190 -16301889 + AluJo SINE Alu 1 299 -13 1741 207 0 0 chrY 8411300 8411600 -16301479 - AluSx SINE Alu -12 300 1 205 267 0 0 chrY 8411683 8411728 -16301351 + (TG)n Simple_repeat Simple_repeat 1 45 0 28 29 0 0 chrY 8412292 8412327 -16300752 + AT_rich Low_complexity Low_complexity 1 35 0 1363 206 0 34 chrY 8412339 8412606 -16300473 - AluJo SINE Alu -54 258 1 657 227 8 0 chrY 8412752 8412884 -16300195 + FLAM_C SINE Alu 1 133 0 1438 170 42 8 chrY 8412908 8413167 -16299912 + AluJb SINE Alu 23 290 -22 305 146 37 12 chrY 8413167 8413249 -16299830 + (TA)n Simple_repeat Simple_repeat 1 84 0 2110 134 0 0 chrY 8413339 8413630 -16299449 - AluSx SINE Alu -16 296 6 1870 161 3 3 chrY 8413777 8414057 -16299022 + AluSx SINE Alu 3 283 -25 180 0 0 0 chrY 8414057 8414077 -16299002 + (CA)n Simple_repeat Simple_repeat 1 20 0 2123 109 7 3 chrY 8414085 8414379 -16298700 + AluSx SINE Alu 7 301 -11 4372 128 44 0 chrY 8414557 8415219 -16297860 - LTR8 LTR ERV1 0 691 1 2049 167 92 0 chrY 8415734 8416124 -16296955 + MSTA LTR MaLR 1 426 -2 2275 104 0 7 chrY 8416176 8416484 -16296595 - AluY SINE Alu -3 308 3 2024 154 3 0 chrY 8416543 8416849 -16296230 + AluSx SINE Alu 1 307 -5 415 174 10 31 chrY 8416932 8417030 -16296049 + L1MC2 LINE L1 6073 6168 -176 1280 177 2 40 chrY 8417030 8417539 -16295540 + MER4A LTR ERV1 1 558 -106 41379 70 3 4 chrY 8417672 8423821 -16289258 + L1PA4 LINE L1 2 6142 -13 257 274 42 0 chrY 8423825 8423920 -16289159 + LTR30 LTR ERV1 516 614 -108 804 165 24 0 chrY 8423922 8424049 -16289030 + LTR12 LTR ERV1 351 480 -234 438 103 0 0 chrY 8424052 8424110 -16288969 + Alu SINE Alu 238 295 -15 2793 139 14 91 chrY 8424110 8424201 -16288878 + MER4B LTR ERV1 19 115 -664 2009 156 0 3 chrY 8424201 8424508 -16288571 + AluSq SINE Alu 1 306 -7 2793 139 14 91 chrY 8424508 8424978 -16288101 + MER4B LTR ERV1 115 689 -90 3604 156 34 11 chrY 8424978 8425599 -16287480 + MER41B LTR ERV1 1 635 0 2793 139 14 91 chrY 8425599 8425684 -16287395 + MER4B LTR ERV1 689 779 0 396 145 26 0 chrY 8425685 8425761 -16287318 + L1MC2 LINE L1 6255 6332 -12 257 160 0 40 chrY 8426226 8426276 -16286803 + LTR30 LTR ERV1 1 48 -674 1301 165 157 30 chrY 8426276 8426735 -16286344 + pTR5 LTR ERV1 57 480 -234 1662 209 62 81 chrY 8427464 8427980 -16285099 + LTR64 LTR ERVK 43 548 -10 1733 147 4 0 chrY 8428034 8428299 -16284780 - AluY SINE Alu -45 266 1 745 201 0 8 chrY 8428300 8428434 -16284645 - AluJb SINE Alu -178 134 2 193 109 43 0 chrY 8428451 8428497 -16284582 + (TAGA)n Simple_repeat Simple_repeat 1 48 0 2294 198 27 5 chrY 8428733 8429182 -16283897 + MLT2C2 LTR ERVL 1 459 -5 1910 95 89 131 chrY 8429586 8429997 -16283082 - LTR14B LTR ERVK -5 603 1 2855 105 66 0 chrY 8430194 8430603 -16282476 - MLT2A1 LTR ERVL -8 436 1 1821 125 88 4 chrY 8431550 8431822 -16281257 - AluSc SINE Alu -14 295 1 1295 229 35 7 chrY 8432328 8432616 -16280463 - AluJb SINE Alu -16 296 1 443 282 14 57 chrY 8433362 8433571 -16279508 + LTR4 LTR ERV1 1 200 -396 554 268 65 51 chrY 8433757 8434033 -16279046 + LTR4 LTR ERV1 317 596 0 581 256 17 28 chrY 8435263 8435443 -16277636 - MER39 LTR ERV1 0 707 530 743 224 0 0 chrY 8435446 8435593 -16277486 - AluJb SINE Alu -31 281 135 309 151 0 0 chrY 8435593 8435646 -16277433 + (TA)n Simple_repeat Simple_repeat 2 54 0 337 204 23 0 chrY 8435646 8435734 -16277345 + L1MC4 LINE L1 6614 6703 -1339 700 194 0 8 chrY 8435761 8435890 -16277189 - AluSq/x SINE Alu -184 129 2 541 198 27 94 chrY 8435918 8436160 -16276919 - MER39 LTR ERV1 -206 501 150 232 239 0 0 chrY 8436373 8436419 -16276660 - MER39 LTR ERV1 -661 46 1 661 215 0 0 chrY 8436777 8436907 -16276172 - FRAM SINE Alu -2 174 45 1069 207 10 5 chrY 8437131 8437329 -16275750 + MER58A DNA MER1_type 26 224 0 1675 227 57 4 chrY 8437589 8438025 -16275054 + MER89 LTR ERV1 1 559 0 1637 204 43 6 chrY 8438827 8439179 -16273900 - MLT1A1 LTR MaLR 0 365 1 23 0 0 0 chrY 8439529 8439552 -16273527 + AT_rich Low_complexity Low_complexity 1 23 0 1756 182 49 0 chrY 8440074 8440382 -16272697 + MST-int LTR MaLR 1249 1571 -80 1958 124 0 40 chrY 8440390 8440717 -16272362 + AluY SINE Alu 6 311 0 2398 187 15 41 chrY 8440718 8441033 -16272046 - L1MB5 LINE L1 -37 6137 5840 2199 112 3 7 chrY 8441033 8441336 -16271743 - AluSc SINE Alu -1 308 7 2398 187 15 41 chrY 8441336 8441559 -16271520 - L1MB5 LINE L1 -334 5840 5613 1700 210 0 0 chrY 8441587 8441878 -16271201 + AluJo SINE Alu 3 293 -19 585 238 123 87 chrY 8442525 8443016 -16270063 - MER34C LTR ERV1 -64 501 5 235 176 39 20 chrY 8443269 8443320 -16269759 + MLT1C LTR MaLR 130 181 -209 776 179 0 7 chrY 8443320 8443460 -16269619 + AluJb SINE Alu 3 141 -171 1116 254 17 17 chrY 8443488 8443787 -16269292 + MLT1C LTR MaLR 169 467 0 3270 140 22 15 chrY 8444075 8444618 -16268461 - L1PB4 LINE L1 0 6156 5610 216 327 109 27 chrY 8445205 8445462 -16267617 - L2 LINE L2 -167 3105 2828 289 315 216 4 chrY 8445783 8446037 -16267042 + L2 LINE L2 2963 3270 -2 235 228 0 35 chrY 8446333 8446390 -16266689 + (TATATG)n Simple_repeat Simple_repeat 5 59 0 680 218 63 17 chrY 8447313 8447487 -16265592 - AluJb SINE Alu -15 297 116 809 234 152 4 chrY 8447587 8447856 -16265223 - MLT1E2 LTR MaLR -207 419 111 3651 30 0 0 chrY 8449027 8449458 -16263621 - L1P LINE L1 -1014 5132 4702 * 5981 31 0 4 chrY 8449455 8450161 -16262918 + L1P LINE L1 4003 4705 -1441 2386 94 0 0 chrY 8451759 8452068 -16261011 + AluY SINE Alu 3 311 0 234 0 0 0 chrY 8454071 8454097 -16258982 + (TG)n Simple_repeat Simple_repeat 2 27 0 306 313 8 31 chrY 8455087 8455215 -16257864 + L2 LINE L2 2715 2839 -475 264 200 0 0 chrY 8657394 8657444 -16055635 + AluJ/FRAM SINE Alu 233 282 -20 441 0 0 0 chrY 8657456 8657505 -16055574 + (TAA)n Simple_repeat Simple_repeat 2 50 0 198 0 0 0 chrY 8657504 8657526 -16055553 + (GA)n Simple_repeat Simple_repeat 2 23 0 * 980 252 65 9 chrY 8657635 8658338 -16054741 - L1M4 LINE L1 -3542 2840 2098 484 249 81 1 chrY 8658455 8658676 -16054403 - L1M4 LINE L1 -4456 1926 1612 434 295 57 34 chrY 8658702 8659067 -16054012 - L1M4 LINE L1 -4517 1786 1128 247 81 0 27 chrY 8659079 8659116 -16053963 + (TTCC)n Simple_repeat Simple_repeat 3 38 0 353 147 0 15 chrY 8659117 8659185 -16053894 + (TCCCC)n Simple_repeat Simple_repeat 5 71 0 851 228 103 23 chrY 8659189 8659452 -16053627 - AluJo SINE Alu -3 309 26 332 276 24 24 chrY 8659454 8659581 -16053498 - L1M4 LINE L1 -5265 1119 993 663 266 15 0 chrY 8659592 8659795 -16053284 + L1MB2 LINE L1 3734 3939 -2207 1281 221 4 30 chrY 8659799 8660061 -16053018 + AluJo SINE Alu 1 255 -57 204 40 0 0 chrY 8660090 8660115 -16052964 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 2158 254 87 44 chrY 8660142 8660442 -16052637 + L1MB2 LINE L1 3967 4253 -1893 387 0 0 0 chrY 8660442 8660485 -16052594 + (CA)n Simple_repeat Simple_repeat 2 44 0 2158 254 87 44 chrY 8660485 8661372 -16051707 + L1MB2 LINE L1 4253 5205 -941 243 0 0 0 chrY 8661372 8661399 -16051680 + (A)n Simple_repeat Simple_repeat 1 27 0 1734 208 89 109 chrY 8661404 8661953 -16051126 + L1MB2 LINE L1 5299 5857 -314 1475 113 5 0 chrY 8661953 8662148 -16050931 + AluSc SINE Alu 1 196 -113 337 115 16 0 chrY 8662149 8662210 -16050869 + AluSc SINE Alu 238 299 0 1734 208 89 109 chrY 8662210 8662449 -16050630 + L1MB2 LINE L1 5856 6132 -39 1952 160 7 0 chrY 8662470 8662776 -16050303 + AluSx SINE Alu 5 312 0 651 244 76 23 chrY 8662807 8663110 -16049969 + Charlie2 DNA MER1_type 2004 2322 -540 638 329 71 53 chrY 8663245 8663883 -16049196 - L2 LINE L2 -255 3058 2415 1339 188 22 43 chrY 8663945 8664222 -16048857 - AluJo SINE Alu -21 291 21 749 226 84 8 chrY 8664298 8664665 -16048414 + Charlie2 DNA MER1_type 2393 2787 -75 430 320 74 7 chrY 8664711 8664995 -16048084 - L1ME LINE L1 -482 5688 5386 424 258 27 86 chrY 8665133 8665216 -16047863 - L1ME LINE L1 -888 5258 5172 1646 197 17 14 chrY 8665216 8665506 -16047573 + AluJb SINE Alu 1 291 -21 424 258 27 86 chrY 8665506 8665643 -16047436 - L1ME LINE L1 -974 5172 5051 335 263 103 67 chrY 8665655 8665879 -16047200 + L1ME3A LINE L1 5793 6024 -146 314 331 83 6 chrY 8665976 8666145 -16046934 + MIR SINE MIR 9 190 -72 807 269 47 25 chrY 8666287 8666566 -16046513 - MLT1E LTR MaLR -1 592 308 250 267 13 13 chrY 8666576 8666651 -16046428 - MLT1F LTR MaLR -467 75 1 2099 128 3 0 chrY 8666803 8667100 -16045979 + AluSg1 SINE Alu 1 298 -11 236 190 0 89 chrY 8668240 8668319 -16044760 + CT-rich Low_complexity Low_complexity 4 75 0 2736 93 30 5 chrY 8668939 8669367 -16043712 - LTR7 LTR ERV1 -11 439 1 500 228 80 25 chrY 8669497 8669590 -16043489 + MER45A DNA AcHobo 1 108 -1473 1865 163 30 3 chrY 8669590 8669891 -16043188 - AluSx SINE Alu -3 309 1 500 228 80 25 chrY 8669891 8669959 -16043120 + MER45A DNA AcHobo 108 171 -7 336 323 74 9 chrY 8670201 8670418 -16042661 - LTR50 LTR ERVL -112 683 453 863 273 92 44 chrY 8670770 8671225 -16041854 + L1M4 LINE L1 8 484 -6058 877 267 31 16 chrY 8671243 8671708 -16041371 - MER74A LTR ERVL 0 622 89 373 314 80 29 chrY 8671753 8671992 -16041087 + L1M4 LINE L1 523 773 -5769 951 167 103 138 chrY 8672011 8672174 -16040905 + AluY SINE Alu 1 149 -152 1191 112 0 0 chrY 8672174 8672353 -16040726 + (GAA)n Simple_repeat Simple_repeat 1 179 0 951 167 103 138 chrY 8672353 8672500 -16040579 + AluY SINE Alu 149 300 -1 213 296 0 0 chrY 8672509 8672580 -16040499 + A-rich Low_complexity Low_complexity 1 71 0 467 257 71 11 chrY 8672604 8672787 -16040292 + L1M4 LINE L1 984 1177 -5365 264 230 40 20 chrY 8672833 8672933 -16040146 - L1MA8 LINE L1 -3 6288 6187 654 200 75 0 chrY 8672969 8673089 -16039990 - FLAM_A SINE Alu 0 133 5 599 201 20 106 chrY 8673089 8673343 -16039736 - L1M3e LINE L1 -3280 3048 2817 497 129 43 0 chrY 8673392 8673485 -16039594 + L1 LINE L1 3479 3575 -2571 902 227 33 115 chrY 8673537 8674021 -16039058 - L1M3e LINE L1 -3514 2814 2379 2198 96 0 20 chrY 8674021 8674314 -16038765 - AluSc SINE Alu -22 287 1 902 227 33 115 chrY 8674314 8674376 -16038703 - L1M3e LINE L1 -3949 2379 2313 376 156 0 0 chrY 8674381 8674445 -16038634 - AluSx SINE Alu -9 292 229 666 229 28 1 chrY 8674472 8674658 -16038421 - MER61E LTR ERV1 -6 773 340 361 174 65 11 chrY 8674836 8674928 -16038151 - LTR25 LTR ERV1 -428 366 270 1251 155 0 21 chrY 8675101 8675295 -16037784 - AluSq SINE Alu -24 289 100 294 95 0 0 chrY 8675295 8675337 -16037742 + (A)n Simple_repeat Simple_repeat 1 42 0 839 129 9 0 chrY 8675337 8675453 -16037626 - AluSq SINE Alu -196 117 1 267 233 56 33 chrY 8675456 8675546 -16037533 - LTR9 LTR ERV1 -512 100 9 1259 173 4 76 chrY 8675554 8675652 -16037427 - AluSx SINE Alu -79 233 129 2154 113 3 10 chrY 8675652 8675953 -16037126 - AluSg SINE Alu -11 299 1 1259 173 4 76 chrY 8675953 8676103 -16036976 - AluSx SINE Alu -183 129 3 1299 240 182 42 chrY 8676104 8676360 -16036719 - L1M3e LINE L1 -3996 2332 2113 1951 133 4 7 chrY 8676360 8676667 -16036412 + AluSp SINE Alu 5 310 0 1299 240 182 42 chrY 8676667 8676756 -16036323 - L1M3e LINE L1 -4215 2113 2038 1149 210 100 15 chrY 8676756 8677027 -16036052 - AluJb SINE Alu -8 294 1 1299 240 182 42 chrY 8677027 8677638 -16035441 - L1M3e LINE L1 -4290 2038 1260 21 36 0 0 chrY 8677653 8677681 -16035398 + AT_rich Low_complexity Low_complexity 1 28 0 222 134 45 0 chrY 8677690 8677757 -16035322 + (TA)n Simple_repeat Simple_repeat 1 70 0 550 219 65 14 chrY 8677781 8677996 -16035083 - L1 LINE L1 -4141 1187 962 471 149 0 0 chrY 8678006 8678080 -16034999 + AluS SINE Alu 229 302 -10 381 242 63 77 chrY 8678101 8678182 -16034897 - L1M3e LINE L1 -4984 1268 1187 2097 138 0 7 chrY 8678182 8678478 -16034601 - AluSx SINE Alu -18 294 1 381 242 63 77 chrY 8678478 8678646 -16034433 - L1M3e LINE L1 -5065 1187 1018 2201 173 68 15 chrY 8678646 8679113 -16033966 + LTR22B LTR ERVK 1 492 0 381 242 63 77 chrY 8679113 8679158 -16033921 - L1M3e LINE L1 -5234 1018 661 228 371 9 0 chrY 8679259 8679375 -16033704 - L1M3e LINE L1 -4754 574 458 1097 153 67 40 chrY 8679384 8679607 -16033472 + MER30 DNA MER1_type 2 230 0 4200 216 79 61 chrY 8679625 8681074 -16032005 + L1PB4 LINE L1 27 1448 -4880 1820 187 0 3 chrY 8681074 8681368 -16031711 + AluSx SINE Alu 1 293 -19 4200 216 79 61 chrY 8681368 8682229 -16030850 + L1PB4 LINE L1 1448 2383 -3945 1550 217 3 6 chrY 8682229 8682542 -16030537 + AluJb SINE Alu 1 312 0 4200 216 79 61 chrY 8682542 8683191 -16029888 + L1PB4 LINE L1 2383 3018 -3310 1186 238 13 16 chrY 8683213 8683501 -16029578 + L1PB4 LINE L1 4558 4846 -1482 198 0 0 0 chrY 8683501 8683523 -16029556 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 1186 238 13 16 chrY 8683523 8683612 -16029467 + L1PB4 LINE L1 4846 4934 -1394 1710 176 3 14 chrY 8683613 8683902 -16029177 + AluJb SINE Alu 3 288 -24 198 50 75 0 chrY 8683902 8683942 -16029137 + (TA)n Simple_repeat Simple_repeat 1 43 0 21 0 0 0 chrY 8683980 8684001 -16029078 + AT_rich Low_complexity Low_complexity 1 21 0 243 241 101 0 chrY 8684026 8684105 -16028974 + L1MC4 LINE L1 6612 6698 -1344 1016 230 22 4 chrY 8684114 8684388 -16028691 + L1PB4 LINE L1 4920 5198 -1130 3855 164 7 4 chrY 8684388 8685126 -16027953 - L1P LINE L1 -1195 4951 4212 4285 131 10 0 chrY 8685130 8685803 -16027276 + L1PA10 LINE L1 5486 6165 -3 1852 148 0 0 chrY 8685831 8686102 -16026977 - AluSx SINE Alu -41 271 1 4303 185 39 1 chrY 8686106 8687162 -16025917 + L1PB4 LINE L1 5227 6330 -8 461 306 48 77 chrY 8687253 8687373 -16025706 + L1MC4a LINE L1 4910 5032 -1114 2158 136 10 0 chrY 8687373 8687682 -16025397 + AluSx SINE Alu 1 312 0 461 306 48 77 chrY 8687682 8688058 -16025021 + L1MC4a LINE L1 5032 5392 -754 2232 120 3 0 chrY 8688061 8688360 -16024719 + AluSg SINE Alu 1 300 -10 1046 233 39 16 chrY 8688405 8688663 -16024416 + AluJo SINE Alu 19 282 -30 1102 293 75 22 chrY 8688701 8689329 -16023750 + L1MC4a LINE L1 5440 6100 -1708 3902 237 76 96 chrY 8689338 8690490 -16022589 - L1PA15-16 LINE L1 -3733 3116 1942 996 177 0 0 chrY 8690490 8690663 -16022416 - AluSg/x SINE Alu 0 306 134 3902 237 76 96 chrY 8690663 8691695 -16021384 - L1PA15-16 LINE L1 -4907 1942 600 1719 209 24 40 chrY 8691698 8692005 -16021074 - L1PA15-16 LINE L1 -6433 416 116 2173 137 0 9 chrY 8692005 8692320 -16020759 - AluSx SINE Alu 0 312 1 1719 209 24 40 chrY 8692320 8692433 -16020646 - L1PA15-16 LINE L1 -6733 116 3 471 214 24 8 chrY 8692438 8692564 -16020515 - L1M4c LINE L1 -2535 3847 3720 574 183 161 0 chrY 8692666 8692803 -16020276 + AluJb SINE Alu 1 159 -153 384 249 138 37 chrY 8692831 8693156 -16019923 - L1M4c LINE L1 -2694 3688 3331 360 285 48 30 chrY 8693171 8693441 -16019638 - L1M4c LINE L1 -3270 3112 2702 185 269 0 8 chrY 8693464 8693598 -16019481 + (TA)n Simple_repeat Simple_repeat 2 134 0 1063 200 10 10 chrY 8693647 8693847 -16019232 - AluJb SINE Alu -112 200 1 2095 125 23 0 chrY 8694013 8694316 -16018763 + AluSg SINE Alu 1 310 0 1217 153 13 47 chrY 8694954 8695190 -16017889 + MER57A LTR ERV1 135 362 -41 482 191 91 100 chrY 8695203 8695433 -16017646 - L1M4c LINE L1 -4014 2370 2143 1329 291 79 16 chrY 8695524 8696566 -16016513 - L1M4c LINE L1 -4244 2139 1041 366 327 75 31 chrY 8696992 8697218 -16015861 - L1M4c LINE L1 -5896 417 182 418 237 109 11 chrY 8697218 8697501 -16015578 + L1MDb LINE L1 1053 1363 -5046 5868 211 153 11 chrY 8697501 8698981 -16014098 - MER52A LTR ERV1 0 1755 67 1181 274 140 41 chrY 8699010 8699309 -16013770 + L1M4 LINE L1 2737 3005 -3141 1374 227 52 0 chrY 8699309 8699578 -16013501 - AluJo SINE Alu -27 285 3 1181 274 140 41 chrY 8699578 8700782 -16012297 + L1M4 LINE L1 3005 4389 -1757 8076 238 61 50 chrY 8700806 8704232 -16008847 + L1MA4A LINE L1 9 3399 -3449 1474 200 54 0 chrY 8704232 8704512 -16008567 + AluJo SINE Alu 5 299 -13 8076 238 61 50 chrY 8704512 8704533 -16008546 + L1MA4A LINE L1 3399 3418 -3430 575 178 44 59 chrY 8704533 8704668 -16008411 + FLAM_C SINE Alu 1 133 0 8076 238 61 50 chrY 8704668 8705312 -16007767 + L1MA4A LINE L1 3418 4148 -2700 1864 142 44 3 chrY 8705312 8705608 -16007471 + AluSg1 SINE Alu 1 308 -1 8076 238 61 50 chrY 8705608 8705854 -16007225 + L1MA4A LINE L1 4148 4390 -2458 2603 203 57 37 chrY 8706005 8706492 -16006587 + L1MA4A LINE L1 5215 5691 -1199 1648 174 8 0 chrY 8706492 8706756 -16006323 + AluSq SINE Alu 24 289 -24 378 57 43 14 chrY 8706759 8706829 -16006250 + (TAAAA)n Simple_repeat Simple_repeat 2 73 0 2603 203 57 37 chrY 8706829 8707264 -16005815 + L1MA4A LINE L1 5692 6145 -745 1722 198 24 54 chrY 8707278 8707335 -16005744 + L1MA4A LINE L1 6520 6577 -428 1645 195 7 0 chrY 8707335 8707622 -16005457 - AluJb SINE Alu -23 289 1 1722 198 24 54 chrY 8707622 8708065 -16005014 + L1MA4A LINE L1 6577 7005 0 360 309 73 0 chrY 8708077 8708213 -16004866 + L1M2 LINE L1 5131 5276 -1572 611 268 130 13 chrY 8708300 8708685 -16004394 + L1M2 LINE L1 5299 5728 -1120 1985 133 7 7 chrY 8709475 8709768 -16003311 - AluSx SINE Alu -17 295 3 2060 115 33 10 chrY 8710117 8710422 -16002657 + AluSq SINE Alu 2 313 0 1966 139 0 44 chrY 8710922 8711238 -16001841 + AluSg SINE Alu 1 302 -8 201 220 40 0 chrY 8712432 8712482 -16000597 + (CATATA)n Simple_repeat Simple_repeat 3 54 0 25 0 0 0 chrY 8712837 8712862 -16000217 + AT_rich Low_complexity Low_complexity 1 25 0 2158 124 7 0 chrY 8713533 8713831 -15999248 - AluSp SINE Alu -11 302 3 22 35 0 0 chrY 8713973 8714002 -15999077 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chrY 8714703 8714724 -15998355 + AT_rich Low_complexity Low_complexity 1 21 0 2797 3 0 0 chrY 8715413 8715715 -15997364 + AluYa5 SINE Alu 1 302 -9 3348 122 8 6 chrY 8716041 8716551 -15996528 + MER9 LTR ERVK 1 511 0 24579 76 9 7 chrY 8716551 8719952 -15993127 + HERVK9 LTR ERVK 1 3409 -2507 15054 73 6 0 chrY 8719974 8721993 -15991086 + HERVK9 LTR ERVK 3603 5634 -282 2064 75 11 0 chrY 8722089 8722368 -15990711 + HERVK9 LTR ERVK 5635 5916 0 3496 115 4 6 chrY 8722368 8722880 -15990199 + MER9 LTR ERVK 1 511 0 200 185 25 111 chrY 8724900 8724981 -15988098 + L2 LINE L2 3171 3244 -69 24 67 0 0 chrY 8724999 8725044 -15988035 + AT_rich Low_complexity Low_complexity 1 45 0 227 285 47 99 chrY 8725763 8725954 -15987125 - MIR3 SINE MIR -63 145 2 2168 116 3 0 chrY 8726076 8726368 -15986711 - AluSq SINE Alu -10 303 11 21 36 0 0 chrY 8726623 8726651 -15986428 + AT_rich Low_complexity Low_complexity 1 28 0 23757 123 55 25 chrY 8727344 8733067 -15980012 - L1PA7 LINE L1 -50 6419 378 552 15 0 0 chrY 8733067 8733132 -15979947 + (CAAAA)n Simple_repeat Simple_repeat 2 66 0 23757 123 55 25 chrY 8733132 8733522 -15979557 - L1PA7 LINE L1 -6091 378 1 2947 157 47 32 chrY 8733644 8734237 -15978842 + LTR43 LTR ERV1 1 602 0 1561 207 10 3 chrY 8734314 8734613 -15978466 + AluJb SINE Alu 3 303 -9 201 294 78 0 chrY 8734980 8735031 -15978048 - MIR SINE MIR -196 66 12 267 292 42 0 chrY 8735064 8735136 -15977943 + MIR SINE MIR 113 187 -75 789 255 40 51 chrY 8735203 8735617 -15977462 + MLT1D LTR MaLR 26 500 -5 316 341 59 24 chrY 8735842 8736012 -15977067 - MIR SINE MIR -86 176 1 183 42 0 0 chrY 8736251 8736275 -15976804 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 602 217 51 29 chrY 8736280 8736418 -15976661 - AluSc SINE Alu -37 272 132 224 203 38 0 chrY 8737335 8737414 -15975665 + (TA)n Simple_repeat Simple_repeat 2 83 0 392 266 55 64 chrY 8737503 8737721 -15975358 + L1MC4 LINE L1 7390 7645 -203 1009 104 104 0 chrY 8737743 8737906 -15975173 - L1PA7 LINE L1 -110 6044 5865 841 96 0 0 chrY 8737906 8738018 -15975061 + L1PA7 LINE L1 6037 6151 -3 2017 95 46 11 chrY 8738024 8738343 -15974736 + AluSp SINE Alu 1 313 0 401 308 57 44 chrY 8738377 8738692 -15974387 + L1MC4 LINE L1 7723 8041 -1 1431 222 3 14 chrY 8739477 8739765 -15973314 + AluJb SINE Alu 1 285 -27 201 74 0 0 chrY 8739765 8739792 -15973287 + (TGAA)n Simple_repeat Simple_repeat 3 29 0 721 249 91 56 chrY 8739816 8739942 -15973137 + L1M1 LINE L1 2796 2916 -4650 2178 74 3 65 chrY 8739942 8740267 -15972812 + AluY SINE Alu 1 305 -6 721 249 91 56 chrY 8740267 8740646 -15972433 + L1M1 LINE L1 2916 3340 -4226 13084 197 111 29 chrY 8740844 8742769 -15970310 + L1M1 LINE L1 22 1788 -5777 1820 174 3 7 chrY 8742769 8743062 -15970017 - AluSg SINE Alu -18 292 1 13084 197 111 29 chrY 8743062 8743627 -15969452 + L1M1 LINE L1 1788 2305 -5260 1911 136 25 3 chrY 8743627 8743913 -15969166 + AluSq SINE Alu 1 292 -21 13084 197 111 29 chrY 8743913 8744031 -15969048 + L1M1 LINE L1 2305 2412 -5153 2044 121 7 10 chrY 8744031 8744328 -15968751 - AluSq SINE Alu -17 296 1 13084 197 111 29 chrY 8744328 8745638 -15967441 + L1M1 LINE L1 2412 4262 -3303 321 289 22 0 chrY 8745723 8745813 -15967266 + L1M1 LINE L1 4288 4379 -3186 3652 69 31 4 chrY 8745814 8746291 -15966788 + LTR2B LTR ERV1 1 490 0 2292 117 30 0 chrY 8746291 8746660 -15966419 + Harlequin LTR ERV1 1 380 -6516 * 4518 66 9 20 chrY 8746655 8747294 -15965785 + Harlequin LTR ERV1 262 893 -6003 * 4978 66 30 2 chrY 8747287 8748240 -15964839 + Harlequin LTR ERV1 1572 2574 -4322 * 12465 111 12 2 chrY 8748239 8750080 -15962999 + Harlequin LTR ERV1 3352 5210 -1686 8972 164 16 19 chrY 8751065 8752770 -15960309 + Harlequin LTR ERV1 5196 6896 0 3413 78 58 0 chrY 8752770 8753232 -15959847 + LTR2B LTR ERV1 1 489 -1 257 280 2 40 chrY 8753272 8753482 -15959597 + L1M1 LINE L1 3801 4003 -3562 189 94 0 0 chrY 8753495 8753527 -15959552 + (A)n Simple_repeat Simple_repeat 1 32 0 2307 199 64 45 chrY 8753541 8754079 -15959000 + L1M1 LINE L1 4403 4929 -2636 1974 157 10 0 chrY 8754079 8754379 -15958700 - AluSq SINE Alu -10 303 1 2307 199 64 45 chrY 8754379 8754400 -15958679 + L1M1 LINE L1 4929 4948 -2617 1736 96 131 4 chrY 8754400 8754660 -15958419 - AluSc SINE Alu -16 293 1 2307 199 64 45 chrY 8754660 8754894 -15958185 + L1M1 LINE L1 4948 5212 -2353 1975 114 74 0 chrY 8754891 8755245 -15957834 + L1PA10 LINE L1 5799 6176 0 * 1388 199 19 16 chrY 8755248 8755570 -15957509 + L1M1 LINE L1 5203 5525 -2040 4694 236 48 42 chrY 8755570 8755683 -15957396 + L1MA9 LINE L1 4606 4717 -2848 2086 128 7 7 chrY 8755683 8755989 -15957090 + AluSg SINE Alu 1 306 -4 4694 236 48 42 chrY 8755989 8756838 -15956241 + L1MA9 LINE L1 4717 5559 -2006 2023 133 7 17 chrY 8756838 8757131 -15955948 - AluSc SINE Alu -19 290 1 4694 236 48 42 chrY 8757131 8758028 -15955051 + L1MA9 LINE L1 5559 6477 -1088 660 251 52 14 chrY 8758043 8758254 -15954825 + L1MA9 LINE L1 7290 7508 -223 1521 220 30 44 chrY 8758256 8758290 -15954789 - MSTB1 LTR MaLR -6 426 393 2149 114 3 7 chrY 8758290 8758598 -15954481 + AluSq SINE Alu 1 307 -6 1521 220 30 44 chrY 8758598 8758995 -15954084 - MSTB1 LTR MaLR -39 393 1 4575 231 106 43 chrY 8758996 8760523 -15952556 - MSTB1-int LTR MaLR -3 1648 34 1010 147 162 5 chrY 8760561 8760765 -15952314 - MSTB1 LTR MaLR 0 432 197 294 188 12 35 chrY 8760768 8760853 -15952226 + L1MA9 LINE L1 7637 7719 -12 282 354 53 24 chrY 8761537 8761674 -15951405 - MIR SINE MIR -20 242 95 189 74 0 0 chrY 8761674 8761701 -15951378 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 282 354 53 24 chrY 8761701 8761772 -15951307 - MIR SINE MIR -167 95 28 2460 97 0 0 chrY 8761987 8762296 -15950783 + AluY SINE Alu 1 309 -2 1677 169 0 60 chrY 8762819 8763150 -15949929 + AluSx SINE Alu 1 311 -1 1804 128 3 74 chrY 8763797 8764109 -15948970 + AluSx SINE Alu 3 292 -20 1889 167 10 0 chrY 8764406 8764705 -15948374 - AluSx SINE Alu -10 302 1 972 220 180 12 chrY 8765959 8766209 -15946870 - AluJb SINE Alu -19 293 2 2856 224 102 30 chrY 8767333 8768442 -15944637 + Cheshire DNA MER1_type 1215 2403 -17 773 159 0 0 chrY 8770214 8770340 -15942739 - AluSg/x SINE Alu -11 301 176 24 85 0 0 chrY 8770747 8770806 -15942273 + AT_rich Low_complexity Low_complexity 1 59 0 1685 253 49 42 chrY 8770864 8771484 -15941595 + L1MB8 LINE L1 4909 5523 -655 1822 173 10 13 chrY 8771484 8771790 -15941289 + AluSx SINE Alu 1 305 -7 1685 253 49 42 chrY 8771790 8771851 -15941228 + L1MB8 LINE L1 5523 5582 -596 1796 189 14 0 chrY 8771851 8772148 -15940931 + AluSx SINE Alu 1 301 -11 1685 253 49 42 chrY 8772148 8772724 -15940355 + L1MB8 LINE L1 5582 6176 -2 2424 87 0 3 chrY 8772823 8773134 -15939945 + AluY SINE Alu 1 310 -1 2370 95 0 0 chrY 8773449 8773753 -15939326 + AluY SINE Alu 1 304 -7 846 278 68 16 chrY 8773771 8774199 -15938880 + L1MB4 LINE L1 3640 4089 -2057 3362 192 64 56 chrY 8774207 8774321 -15938758 + L1PA16 LINE L1 4529 4641 -1525 2172 98 10 10 chrY 8774321 8774617 -15938462 + AluY SINE Alu 1 296 -15 3362 192 64 56 chrY 8774617 8774828 -15938251 + L1PA16 LINE L1 4641 4849 -1317 2697 17 0 0 chrY 8774828 8775125 -15937954 + AluY SINE Alu 1 297 -14 3362 192 64 56 chrY 8775125 8775625 -15937454 + L1PA16 LINE L1 4849 5344 -822 2617 10 0 3 chrY 8775625 8775918 -15937161 + AluY SINE Alu 1 292 -19 3362 192 64 56 chrY 8775918 8775996 -15937083 + L1PA16 LINE L1 5344 5420 -746 1981 123 27 3 chrY 8775996 8776289 -15936790 + AluSp SINE Alu 1 300 -13 3362 192 64 56 chrY 8776289 8776651 -15936428 + L1PA16 LINE L1 5420 5778 -388 4162 104 55 14 chrY 8776651 8777292 -15935787 + PABL_B LTR ERV1 1 667 0 3362 192 64 56 chrY 8777292 8777670 -15935409 + L1PA16 LINE L1 5778 6154 -12 1880 100 4 8 chrY 8777690 8777949 -15935130 + AluY SINE Alu 45 302 -9 1146 272 72 10 chrY 8777952 8778441 -15934638 + L1MB4 LINE L1 4720 5238 -908 296 283 11 0 chrY 8778469 8778571 -15934508 + L1MB4 LINE L1 5525 5627 -547 468 195 163 14 chrY 8778597 8778804 -15934275 + L1MB4 LINE L1 5688 5939 -236 2213 118 3 0 chrY 8778845 8779151 -15933928 + AluSp SINE Alu 5 311 -2 375 149 0 15 chrY 8779200 8779267 -15933812 + MER4A LTR ERV1 33 98 -566 1352 154 20 49 chrY 8779267 8779623 -15933456 + MER4A LTR ERV1 261 664 0 2987 116 143 45 chrY 8779627 8780324 -15932755 + MER4A-int LTR ERV1 2 835 -5763 266 125 0 0 chrY 8780422 8780470 -15932609 + MER4A-int LTR ERV1 839 886 -5712 * 365 150 0 0 chrY 8780468 8780528 -15932551 + MER4A-int LTR ERV1 993 1052 -5546 1906 162 0 0 chrY 8780528 8780818 -15932261 - AluSx SINE Alu -22 290 1 438 122 0 0 chrY 8780818 8780892 -15932187 + MER4A-int LTR ERV1 2420 2493 -4105 1031 167 103 8 chrY 8780895 8781129 -15931950 - LTR8 LTR ERV1 -435 256 1 2615 147 82 98 chrY 8781129 8781393 -15931686 + MER4A-int LTR ERV1 2737 3004 -3594 1997 139 11 0 chrY 8781393 8781739 -15931340 + AluSx SINE Alu 1 349 0 2615 147 82 98 chrY 8781739 8782243 -15930836 + MER4A-int LTR ERV1 3004 3491 -3107 1751 164 22 0 chrY 8782243 8782518 -15930561 + AluSc SINE Alu 1 281 -28 2615 147 82 98 chrY 8782518 8782705 -15930374 + MER4A-int LTR ERV1 3491 3679 -2919 10223 131 85 18 chrY 8782713 8784819 -15928260 + MER4A-int LTR ERV1 3842 6088 -510 649 78 0 0 chrY 8784821 8784911 -15928168 + MER4A-int LTR ERV1 6495 6584 -14 444 158 32 11 chrY 8784930 8785025 -15928054 + MER4A LTR ERV1 1 97 -567 1676 158 9 22 chrY 8785026 8785374 -15927705 + MER4A LTR ERV1 261 662 -2 477 220 45 9 chrY 8785380 8785529 -15927550 + L1MB3 LINE L1 6001 6144 -27 1895 155 7 0 chrY 8785802 8786098 -15926981 - AluSx SINE Alu -14 298 1 2173 126 3 7 chrY 8786631 8786940 -15926139 + AluSx SINE Alu 3 310 -2 321 177 0 0 chrY 8787585 8787647 -15925432 + MER4A-int LTR ERV1 4405 4466 -1120 537 103 35 0 chrY 8787650 8787737 -15925342 + MER4A-int LTR ERV1 6495 6584 -14 459 156 31 10 chrY 8787757 8787853 -15925226 + MER4A LTR ERV1 1 98 -566 673 234 41 18 chrY 8789369 8789540 -15923539 - MER58A DNA MER1_type -12 212 38 23 33 0 0 chrY 8790528 8790558 -15922521 + AT_rich Low_complexity Low_complexity 1 30 0 1905 130 3 0 chrY 8791461 8791789 -15921290 + AluSp SINE Alu 2 330 0 241 242 15 0 chrY 8792122 8792188 -15920891 + CT-rich Low_complexity Low_complexity 4 70 0 23 54 0 0 chrY 8792436 8792473 -15920606 + AT_rich Low_complexity Low_complexity 1 37 0 461 269 0 7 chrY 8793063 8793208 -15919871 + L1MB8 LINE L1 6029 6172 -6 8245 153 92 17 chrY 8793755 8795511 -15917568 + L1P3 LINE L1 14 1885 -4576 * 10995 127 24 7 chrY 8795507 8797271 -15915808 + L1P LINE L1 3379 5182 -964 3244 121 29 26 chrY 8797271 8797817 -15915262 + LTR14 LTR ERVK 1 548 0 10995 127 24 7 chrY 8797817 8797992 -15915087 + L1P LINE L1 5182 5352 -794 6050 89 15 2 chrY 8797992 8798874 -15914205 + L1PA8 LINE L1 5270 6163 -9 654 274 69 19 chrY 8800230 8800693 -15912386 + L1M4 LINE L1 2700 3185 -2961 403 291 89 22 chrY 8800834 8801147 -15911932 + L1M4 LINE L1 3555 3888 -2258 * 801 240 103 6 chrY 8801140 8801469 -15911610 + L1M4 LINE L1 4692 5052 -1094 244 139 70 128 chrY 8801482 8801527 -15911552 - MLT2C1 LTR ERVL -243 154 115 1808 146 0 76 chrY 8801527 8801742 -15911337 - AluSx SINE Alu -9 303 120 2085 134 0 19 chrY 8801742 8802055 -15911024 + AluSx SINE Alu 1 307 -5 1808 146 0 76 chrY 8802055 8802167 -15910912 - AluSx SINE Alu -192 120 1 244 139 70 128 chrY 8802167 8802207 -15910872 - MLT2C1 LTR ERVL -282 115 74 484 225 116 66 chrY 8802291 8802727 -15910352 + LTR15 LTR ERV1 193 596 0 15519 285 42 47 chrY 8802746 8810256 -15902823 + HERV3 LTR ERV1 19 7724 -1011 437 374 0 9 chrY 8810329 8810556 -15902523 + HERV3 LTR ERV1 8202 8426 0 683 235 90 108 chrY 8810647 8810954 -15902125 + LTR30 LTR ERV1 108 368 -125 2095 105 0 14 chrY 8810954 8811249 -15901830 + AluY SINE Alu 1 291 -20 683 235 90 108 chrY 8811249 8811373 -15901706 + LTR30 LTR ERV1 368 493 0 208 320 73 87 chrY 8811545 8811845 -15901234 - L2 LINE L2 -22 3291 2996 310 227 40 13 chrY 8811857 8811932 -15901147 - MER2 DNA MER2_type 0 345 269 568 253 56 25 chrY 8812210 8812372 -15900707 + L1MB5 LINE L1 5854 6020 -154 * 1764 269 53 37 chrY 8812347 8812965 -15900114 + L1MCa LINE L1 130 757 -5669 625 166 7 28 chrY 8813023 8813168 -15899911 + LTR21A LTR ERV1 345 486 -19 554 215 77 48 chrY 8813168 8813377 -15899702 + L1MCa LINE L1 1346 1560 -4866 1488 217 49 23 chrY 8813386 8813731 -15899348 + MLT1A1 LTR MaLR 11 364 -1 311 203 170 4 chrY 8813732 8813865 -15899214 + L1MCa LINE L1 1554 1815 -4611 348 252 65 9 chrY 8813884 8813991 -15899088 + L1MC2 LINE L1 6222 6334 -10 1809 185 96 23 chrY 8814147 8814575 -15898504 + LTR2B LTR ERV1 32 490 0 355 266 13 0 chrY 8814954 8815033 -15898046 - Tigger7 DNA MER2_type 0 2487 2408 1213 203 58 16 chrY 8815046 8815288 -15897791 - Tigger7 DNA MER2_type -466 267 16 9563 166 68 74 chrY 8815339 8815824 -15897255 + Tigger1 DNA MER2_type 1 488 -1930 1663 184 0 7 chrY 8815824 8816123 -15896956 - AluJo SINE Alu -15 297 1 9563 166 68 74 chrY 8816123 8817639 -15895440 + Tigger1 DNA MER2_type 488 1987 -431 1879 138 18 0 chrY 8817639 8817921 -15895158 + AluSx SINE Alu 5 291 -21 9563 166 68 74 chrY 8817921 8818351 -15894728 + Tigger1 DNA MER2_type 1987 2418 0 2191 107 0 0 chrY 8819670 8819969 -15893110 - AluY SINE Alu -12 299 1 1994 130 0 7 chrY 8820036 8820336 -15892743 + AluSc SINE Alu 6 303 -6 351 294 125 33 chrY 8820467 8820651 -15892428 + L1MC4a LINE L1 5697 5897 -1911 260 125 0 0 chrY 8820705 8820753 -15892326 + AluSp/q SINE Alu 255 302 -1 1774 170 7 7 chrY 8820783 8821077 -15892002 + AluSx SINE Alu 1 294 -18 21 36 0 0 chrY 8821599 8821627 -15891452 + AT_rich Low_complexity Low_complexity 1 28 0 34 65 0 0 chrY 8822425 8822487 -15890592 + AT_rich Low_complexity Low_complexity 1 62 0 21 36 0 0 chrY 8823252 8823280 -15889799 + AT_rich Low_complexity Low_complexity 1 28 0 1281 244 3 10 chrY 8823549 8823852 -15889227 - AluJb SINE Alu -11 301 1 348 327 42 42 chrY 8825759 8825927 -15887152 + MIR3 SINE MIR 41 208 0 2074 124 3 0 chrY 8826425 8826716 -15886363 - AluSg SINE Alu -18 292 1 1325 187 56 4 chrY 8826720 8826987 -15886092 - AluJo SINE Alu -18 294 14 1326 172 135 11 chrY 8827879 8828146 -15884933 - AluSg SINE Alu 0 300 1 215 266 29 54 chrY 8828156 8828253 -15884826 - MIR SINE MIR -129 79 12 21 57 0 0 chrY 8828486 8828521 -15884558 + AT_rich Low_complexity Low_complexity 1 35 0 1326 147 9 0 chrY 8828744 8828955 -15884124 + AluSg/x SINE Alu 97 309 -1 61 46 0 39 chrY 8829060 8829190 -15883889 + AT_rich Low_complexity Low_complexity 1 125 0 2127 115 3 0 chrY 8829380 8829676 -15883403 - AluY SINE Alu -14 297 1 1584 191 0 11 chrY 8830371 8830654 -15882425 - AluSx SINE Alu -28 284 5 24 32 0 0 chrY 8830776 8830807 -15882272 + AT_rich Low_complexity Low_complexity 1 31 0 2183 78 3 19 chrY 8831577 8831884 -15881195 - AluY SINE Alu -9 302 1 1741 151 4 0 chrY 8831887 8832165 -15880914 - AluSx SINE Alu -5 307 29 832 228 147 9 chrY 8832265 8832497 -15880582 + Tigger7 DNA MER2_type 1 264 -469 230 225 112 22 chrY 8832500 8832589 -15880490 + Tigger7 DNA MER2_type 2395 2491 0 27 0 0 0 chrY 8832589 8832616 -15880463 + AT_rich Low_complexity Low_complexity 1 27 0 25 0 0 0 chrY 8832895 8832920 -15880159 + AT_rich Low_complexity Low_complexity 1 25 0 34 65 0 0 chrY 8832995 8833057 -15880022 + AT_rich Low_complexity Low_complexity 1 62 0 23 33 0 0 chrY 8833453 8833483 -15879596 + AT_rich Low_complexity Low_complexity 1 30 0 1550 176 3 30 chrY 8834281 8834576 -15878503 + AluJb SINE Alu 1 287 -25 671 230 224 13 chrY 8834595 8834860 -15878219 + L1MB5 LINE L1 3954 4296 -1850 249 119 0 0 chrY 8834860 8834902 -15878177 + (CA)n Simple_repeat Simple_repeat 1 42 0 671 230 224 13 chrY 8834902 8834949 -15878130 + L1MB5 LINE L1 4296 4332 -1814 957 226 25 69 chrY 8834949 8835224 -15877855 + Tigger7 DNA MER2_type 4 266 -284 239 263 40 53 chrY 8835236 8835312 -15877767 + Tigger7 DNA MER2_type 2402 2476 -11 2767 246 95 11 chrY 8835367 8837007 -15876072 + L1MB5 LINE L1 4341 6130 -44 579 244 0 15 chrY 8837021 8837152 -15875927 + AluJo SINE Alu 37 165 -147 407 119 0 0 chrY 8837304 8837363 -15875716 - AluJ/FLAM SINE Alu -207 95 37 871 195 126 0 chrY 8837365 8837596 -15875483 - L1MB4 LINE L1 -39 6141 5882 1710 100 0 4 chrY 8837616 8837845 -15875234 - AluSc SINE Alu -81 228 1 2566 257 110 67 chrY 8838152 8840057 -15873022 - L1MC3 LINE L1 -751 5395 4845 393 351 73 11 chrY 8840058 8840249 -15872830 + L1MDb LINE L1 73 275 -6134 686 247 82 46 chrY 8840333 8840945 -15872134 + L1MDb LINE L1 659 1504 -4902 2021 133 3 0 chrY 8840945 8841247 -15871832 + AluSq SINE Alu 1 303 -10 686 247 82 46 chrY 8841247 8841293 -15871786 + L1MDb LINE L1 1504 1547 -4859 590 254 207 17 chrY 8841296 8841823 -15871256 + L1MDb LINE L1 1662 2288 -4118 24 0 0 0 chrY 8841983 8842007 -15871072 + AT_rich Low_complexity Low_complexity 1 24 0 1939 155 3 0 chrY 8842007 8842297 -15870782 + AluSx SINE Alu 1 291 -21 936 206 41 10 chrY 8842305 8842499 -15870580 - AluSx SINE Alu -108 204 5 410 62 0 31 chrY 8842542 8842607 -15870472 + AluJ/FLAM SINE Alu 1 63 -249 240 299 63 17 chrY 8842659 8842833 -15870246 + L1M4 LINE L1 912 1093 -5449 1769 240 123 33 chrY 8842845 8844771 -15868308 + L1MCa LINE L1 12 2264 -4162 1718 144 49 0 chrY 8844771 8845035 -15868044 + AluSq SINE Alu 3 279 -34 1769 240 123 33 chrY 8845035 8845198 -15867881 + L1MCa LINE L1 2264 2411 -4015 1359 220 70 3 chrY 8845199 8845513 -15867566 + Tigger3(Golem) DNA MER2_type 2 336 -2693 26 0 0 0 chrY 8845518 8845544 -15867535 + AT_rich Low_complexity Low_complexity 1 26 0 395 273 99 47 chrY 8845599 8845840 -15867239 + L1MCa LINE L1 2626 2877 -3549 696 289 12 0 chrY 8845863 8846036 -15867043 + MER8 DNA MER2_type 2 176 -63 522 225 40 72 chrY 8846052 8846274 -15866805 + L1MCa LINE L1 2946 3160 -3266 1895 268 90 24 chrY 8846304 8846533 -15866546 + L1MCa LINE L1 3088 3300 -3126 1787 150 44 0 chrY 8846533 8846827 -15866252 + AluSx SINE Alu 1 307 -5 1861 113 57 3 chrY 8846829 8847111 -15865968 + AluY SINE Alu 1 297 -14 1895 268 90 24 chrY 8847111 8847899 -15865180 + L1MCa LINE L1 3300 4176 -2250 1567 184 0 0 chrY 8847917 8848183 -15864896 + AluSx SINE Alu 23 288 -24 595 243 77 48 chrY 8848194 8848364 -15864715 + L1MCa LINE L1 4437 4601 -1825 1842 153 10 10 chrY 8848364 8848659 -15864420 - AluSp SINE Alu -18 295 1 595 243 77 48 chrY 8848659 8848863 -15864216 + L1MCa LINE L1 4601 4822 -1604 947 259 92 0 chrY 8848970 8849221 -15863858 - AluJo SINE Alu -38 274 1 741 187 0 0 chrY 8849241 8849364 -15863715 - FLAM_C SINE Alu -9 124 2 2822 3 0 0 chrY 8849607 8849914 -15863165 - AluYa5 SINE Alu -4 307 1 1429 146 9 89 chrY 8850204 8850519 -15862560 + AluSx SINE Alu 1 290 -12 30 0 0 0 chrY 8851010 8851040 -15862039 + AT_rich Low_complexity Low_complexity 1 30 0 1994 148 0 0 chrY 8851042 8851340 -15861739 + AluSq SINE Alu 1 298 -15 4742 224 84 30 chrY 8851862 8852199 -15860880 - L1M2 LINE L1 -499 5813 5496 1729 139 92 14 chrY 8852199 8852545 -15860534 + THE1C LTR MaLR 1 373 -2 4742 224 84 30 chrY 8852545 8854166 -15858913 - L1M2 LINE L1 -816 5496 3742 2362 132 11 19 chrY 8854929 8855293 -15857786 + THE1C LTR MaLR 15 375 0 1168 221 37 27 chrY 8855404 8855702 -15857377 + AluJo SINE Alu 1 301 -1 895 86 78 0 chrY 8855849 8855977 -15857102 - MER85 DNA T2_type 0 139 2 1121 235 76 0 chrY 8856375 8856652 -15856427 - AluJo SINE Alu -3 299 2 1252 180 69 59 chrY 8858880 8859169 -15853910 + AluJb SINE Alu 7 298 -14 297 0 0 0 chrY 8859174 8859207 -15853872 + (CA)n Simple_repeat Simple_repeat 2 34 0 1997 127 13 16 chrY 8859418 8859726 -15853353 - AluSx SINE Alu -5 307 1 22 35 0 0 chrY 8860720 8860749 -15852330 + AT_rich Low_complexity Low_complexity 1 29 0 1158 215 106 11 chrY 8861852 8862388 -15850691 + L1MB4 LINE L1 4900 5488 -696 563 209 45 47 chrY 8862459 8862631 -15850448 + L1P4 LINE L1 5655 5827 -341 599 178 0 0 chrY 8862632 8862739 -15850340 + FRAM SINE Alu 62 168 -8 1048 238 102 9 chrY 8862739 8863062 -15850017 + L1MB4 LINE L1 5823 6175 -5 612 225 93 24 chrY 8863236 8863531 -15849548 + MER34B LTR ERV1 1 361 -204 2469 133 141 24 chrY 8863585 8864087 -15848992 + LTR24B LTR ERV1 9 569 -7 240 194 30 15 chrY 8864100 8864167 -15848912 + MER34B LTR ERV1 427 494 -71 225 149 391 35 chrY 8864291 8864378 -15848701 + L1MD2 LINE L1 6191 6308 -51 1030 271 112 6 chrY 8864498 8864856 -15848223 + MSTD LTR MaLR 1 396 0 2129 125 17 0 chrY 8865110 8865407 -15847672 + AluSq SINE Alu 3 304 -9 462 235 0 20 chrY 8866592 8866694 -15846385 - Tigger7 DNA MER2_type 0 2587 2488 828 151 184 110 chrY 8866696 8866813 -15846266 - Tigger7 DNA MER2_type -470 263 156 2135 127 0 0 chrY 8866813 8867104 -15845975 - AluSc SINE Alu -16 293 3 828 151 184 110 chrY 8867104 8867231 -15845848 - Tigger7 DNA MER2_type -577 156 1 762 223 32 0 chrY 8867276 8867433 -15845646 + FAM SINE Alu 1 162 -13 1851 180 74 2 chrY 8868137 8868571 -15844508 + L1MA6 LINE L1 5324 5788 -503 421 225 8 33 chrY 8868661 8868781 -15844298 + MER6 DNA MER2_type 25 862 -3 1832 189 75 31 chrY 8868788 8869239 -15843840 + L1MA6 LINE L1 5830 6300 0 31 0 0 0 chrY 8869239 8869270 -15843809 + AT_rich Low_complexity Low_complexity 1 31 0 270 259 17 9 chrY 8870202 8870318 -15842761 + (TA)n Simple_repeat Simple_repeat 1 117 0 286 205 154 0 chrY 8870318 8870435 -15842644 - L1MA9 LINE L1 -25 6287 6153 233 271 141 0 chrY 8871881 8871966 -15841113 + MLT1L LTR MaLR 450 546 -69 2158 238 32 30 chrY 8873032 8873634 -15839445 + MER77 LTR ERV1 3 605 0 1377 211 0 4 chrY 8875024 8875285 -15837794 - AluJo SINE Alu -32 280 21 415 293 9 48 chrY 8875342 8875571 -15837508 - L1M4 LINE L1 -1180 4966 4747 1851 252 74 95 chrY 8876422 8877517 -15835562 + MER52A LTR ERV1 684 1755 0 2295 164 31 11 chrY 8878562 8879007 -15834072 - Tigger4(Zombi) DNA MER2_type 0 2731 2278 1377 212 55 13 chrY 8879022 8879329 -15833750 + MER7A DNA MER2_type 29 346 0 609 87 0 95 chrY 8879329 8879455 -15833624 - Tigger4(Zombi) DNA MER2_type -462 2269 2156 910 174 0 0 chrY 8879461 8879610 -15833469 - AluSg/x SINE Alu -23 289 141 4875 168 80 6 chrY 8879652 8880598 -15832481 - Tigger4(Zombi) DNA MER2_type -647 2084 1069 3634 183 95 12 chrY 8880594 8881365 -15831714 - Tigger4(Zombi) DNA MER2_type -1892 839 5 * 624 168 7 87 chrY 8881364 8881435 -15831644 - Tigger4(Zombi) DNA MER2_type -1920 811 757 * 5541 52 7 3 chrY 8881435 8882132 -15830947 - L1PA5 LINE L1 -6 6148 5449 624 168 7 87 chrY 8882132 8882209 -15830870 - Tigger4(Zombi) DNA MER2_type -1974 757 675 2978 188 96 3 chrY 8882330 8882964 -15830115 - MER54A LTR ERVL 0 901 209 712 194 65 0 chrY 8882966 8883105 -15829974 - MER47A DNA MER2_type 0 366 219 1089 204 27 5 chrY 8883105 8883325 -15829754 - AluJb SINE Alu -1 311 87 1055 215 14 9 chrY 8883330 8883553 -15829526 - MER47A DNA MER2_type -141 225 2 707 264 35 30 chrY 8883553 8883748 -15829331 - MER54A LTR ERVL -692 209 14 1518 203 45 13 chrY 8883815 8884189 -15828890 + L1P LINE L1 4675 5060 -1086 3265 156 61 75 chrY 8884190 8885430 -15827649 + L1PA14 LINE L1 4927 6144 -17 231 345 22 29 chrY 8886202 8886341 -15826738 + L1MEc LINE L1 266 403 -5993 326 290 179 28 chrY 8886569 8886821 -15826258 + L1MDa LINE L1 137 426 -6114 1929 151 0 0 chrY 8887640 8887949 -15825130 + AluSg SINE Alu 1 309 0 1859 136 28 0 chrY 8887958 8888244 -15824835 + AluY SINE Alu 1 294 -17 400 238 12 0 chrY 8888250 8888334 -15824745 + FLAM_A SINE Alu 48 121 -12 568 207 45 29 chrY 8888451 8888691 -15824388 + L1MC/D LINE L1 5194 5436 -743 309 347 32 23 chrY 8888764 8888980 -15824099 + L1M3b LINE L1 1451 1668 -5828 1725 269 90 26 chrY 8889380 8891338 -15821741 + L1M3b LINE L1 2114 4058 -3507 5719 232 38 6 chrY 8891343 8893039 -15820040 - L1P5 LINE L1 -617 5539 3794 1451 185 120 95 chrY 8893052 8893587 -15819492 + LTR10A LTR ERV1 1 548 -61 2212 227 19 19 chrY 8893599 8894168 -15818911 - L1 LINE L1 -2361 3785 3217 1114 199 30 56 chrY 8894184 8894451 -15818628 + AluJb SINE Alu 12 271 -41 1950 229 73 30 chrY 8894488 8895794 -15817285 + L1M3b LINE L1 4621 6108 -1457 5274 273 59 15 chrY 8895796 8897711 -15815368 + L1M2 LINE L1 899 2898 -3951 1520 173 12 0 chrY 8897731 8897980 -15815099 - AluSx SINE Alu -25 287 36 1922 243 66 18 chrY 8898000 8898740 -15814339 + L1M2 LINE L1 2887 3662 -3186 3844 270 56 60 chrY 8899212 8900482 -15812597 + HERV15 LTR ERV1 26 1125 -7301 333 0 0 0 chrY 8900482 8900519 -15812560 + (CA)n Simple_repeat Simple_repeat 2 38 0 3844 270 56 60 chrY 8900519 8901409 -15811670 + HERV15 LTR ERV1 1125 2017 -6409 * 4006 297 25 30 chrY 8901389 8902741 -15810338 + HERV3 LTR ERV1 3492 4836 -3590 2972 290 39 18 chrY 8902768 8903755 -15809324 + HERV3 LTR ERV1 5165 6171 -2255 201 196 0 0 chrY 8903782 8903828 -15809251 + (TAAG)n Simple_repeat Simple_repeat 1 46 0 4070 296 73 59 chrY 8903829 8904698 -15808381 + HERV3 LTR ERV1 6153 7008 -1418 186 71 0 0 chrY 8904698 8904726 -15808353 + (TTTTA)n Simple_repeat Simple_repeat 5 32 0 4070 296 73 59 chrY 8904726 8906035 -15807044 + HERV3 LTR ERV1 7008 8363 -63 202 122 0 61 chrY 8906637 8906686 -15806393 + (TAAAA)n Simple_repeat Simple_repeat 3 48 0 689 248 64 32 chrY 8907135 8907417 -15805662 + L1M2 LINE L1 3584 3874 -2974 680 131 0 0 chrY 8907508 8907607 -15805472 + AluS SINE Alu 1 99 -213 650 184 49 5 chrY 8907619 8907804 -15805275 + L1M2 LINE L1 3951 4143 -2705 816 182 20 5 chrY 8907809 8908012 -15805067 + L1M2 LINE L1 4039 4244 -2604 581 219 58 34 chrY 8907987 8908192 -15804887 + L1PB4 LINE L1 6649 6858 0 * 478 271 109 44 chrY 8908235 8908392 -15804687 + L1M4 LINE L1 2554 2699 -3447 1956 142 7 3 chrY 8908392 8908694 -15804385 + AluSc SINE Alu 3 305 -4 478 271 109 44 chrY 8908694 8908759 -15804320 + L1M4 LINE L1 2699 2758 -3388 342 0 0 0 chrY 8908759 8908797 -15804282 + (TA)n Simple_repeat Simple_repeat 2 39 0 478 271 109 44 chrY 8908797 8909142 -15803937 + L1M4 LINE L1 2758 3159 -2987 1271 248 13 6 chrY 8909145 8909460 -15803619 - L1P LINE L1 -1927 4219 3903 2391 104 42 13 chrY 8909462 8909848 -15803231 + L1PA15 LINE L1 5769 6165 0 507 189 42 0 chrY 8909966 8910061 -15803018 + AluJ/FLAM SINE Alu 1 99 -213 705 56 0 0 chrY 8910066 8910156 -15802923 + (TAGA)n Simple_repeat Simple_repeat 2 91 0 545 283 119 8 chrY 8910188 8910439 -15802640 + L1M4 LINE L1 4519 4797 -1349 1977 94 0 30 chrY 8910479 8910778 -15802301 - L1PA7 LINE L1 0 6154 5865 984 212 65 23 chrY 8910796 8911102 -15801977 + L1MC3 LINE L1 7467 7785 0 753 257 76 9 chrY 8911188 8911398 -15801681 + L1M3a LINE L1 6 229 -5726 823 219 159 39 chrY 8911499 8911968 -15801111 - L1M4 LINE L1 -514 5664 5141 725 236 75 28 chrY 8911961 8912215 -15800864 + L1MB8 LINE L1 5913 6178 0 * 1000 305 94 37 chrY 8913750 8914057 -15799022 + L1M4b LINE L1 103 391 -6468 2111 128 0 0 chrY 8914057 8914355 -15798724 + AluY SINE Alu 1 298 -13 1000 305 94 37 chrY 8914355 8914863 -15798216 + L1M4b LINE L1 391 965 -5894 486 293 177 41 chrY 8914958 8915449 -15797630 + L1MDa LINE L1 169 726 -5814 1666 170 33 14 chrY 8915601 8915877 -15797202 + AluSx SINE Alu 1 281 -31 436 291 59 16 chrY 8915972 8916329 -15796750 + L1MDa LINE L1 1174 1557 -4983 423 259 29 14 chrY 8916397 8916536 -15796543 + L1MB5 LINE L1 285 425 -6424 1491 235 96 25 chrY 8916538 8917387 -15795692 + L1MB5 LINE L1 5378 6299 -583 1045 83 0 0 chrY 8917455 8917587 -15795492 + AluSq/x SINE Alu 2 133 -179 975 164 0 0 chrY 8917606 8917752 -15795327 + AluSp SINE Alu 121 266 -47 960 238 84 20 chrY 8917767 8918111 -15794968 + L1MB5 LINE L1 6354 6719 -157 1842 168 13 0 chrY 8918170 8918474 -15794605 + AluSq SINE Alu 1 308 -5 733 227 91 31 chrY 8918474 8918826 -15794253 + L1MB4 LINE L1 5808 6180 0 1860 229 43 7 chrY 8919116 8919553 -15793526 - MER88 LTR ERVL -11 453 1 432 276 35 58 chrY 8919586 8919843 -15793236 + HAL1 LINE L1 1461 1711 -796 1165 259 24 10 chrY 8919864 8920158 -15792921 + AluJb SINE Alu 1 298 -4 402 232 119 55 chrY 8920683 8921028 -15792051 + L1ME LINE L1 4235 4601 -1545 2122 202 63 13 chrY 8921069 8921623 -15791456 + L1MC3 LINE L1 7138 7719 -66 4098 27 0 0 chrY 8921675 8922283 -15790796 - L1PA4 LINE L1 -398 5757 5150 3239 45 17 0 chrY 8922283 8922684 -15790395 + L1PA4 LINE L1 5742 6152 -3 1566 220 3 0 chrY 8923934 8924230 -15788849 + AluJb SINE Alu 1 297 -15 928 179 127 11 chrY 8924231 8924499 -15788580 + L1MA8 LINE L1 5989 6287 -4 300 161 36 36 chrY 8924660 8924772 -15788307 + GA-rich Low_complexity Low_complexity 3 114 0 324 300 15 54 chrY 8924846 8924976 -15788103 + L1ME LINE L1 5481 5605 -516 1663 122 26 82 chrY 8925145 8925448 -15787631 - AluSx SINE Alu -26 286 1 1664 189 65 21 chrY 8925820 8926357 -15786722 - L1MB5 LINE L1 0 6171 5589 225 94 0 0 chrY 8926357 8926389 -15786690 + (TA)n Simple_repeat Simple_repeat 2 33 0 5169 62 1 1 chrY 8926389 8927045 -15786034 - L1PA5 LINE L1 -9 6145 5490 604 272 88 33 chrY 8927724 8927996 -15785083 - MER82 DNA MER2_type -10 643 357 1879 149 0 55 chrY 8928004 8928313 -15784766 + AluSx SINE Alu 1 292 -20 1970 109 10 33 chrY 8928313 8928615 -15784464 + AluY SINE Alu 1 296 -15 194 136 0 51 chrY 8928618 8928677 -15784402 + (TAAAA)n Simple_repeat Simple_repeat 5 60 0 1279 195 3 65 chrY 8928703 8929042 -15784037 - MER82 DNA MER2_type -301 352 35 1250 186 40 90 chrY 8929171 8929525 -15783554 - MER70B LTR ERVL -223 355 20 1183 97 0 0 chrY 8929691 8929856 -15783223 + L1PA11 LINE L1 6009 6173 -1 1940 142 3 3 chrY 8930424 8930713 -15782366 - AluSg SINE Alu -16 294 6 1940 124 19 32 chrY 8931002 8931317 -15781762 + AluSx SINE Alu 2 312 0 2089 130 10 0 chrY 8931505 8931804 -15781275 + AluSx SINE Alu 1 302 -10 2196 84 7 17 chrY 8931908 8932206 -15780873 + AluY SINE Alu 1 295 -16 2196 113 10 0 chrY 8932728 8933019 -15780060 - AluSx SINE Alu -14 298 5 192 97 0 0 chrY 8934170 8934201 -15778878 + (TAA)n Simple_repeat Simple_repeat 1 31 0 322 235 0 0 chrY 8934390 8934458 -15778621 + MER33 DNA MER1_type 17 84 -240 325 254 36 36 chrY 8934715 8934880 -15778199 + L1ME1 LINE L1 5811 5975 -191 1825 126 0 11 chrY 8935079 8935350 -15777729 + AluSc SINE Alu 25 292 -17 253 274 60 60 chrY 8935464 8935665 -15777414 + L1M4b LINE L1 1330 1530 -5329 421 200 59 0 chrY 8935678 8935763 -15777316 + AluJb SINE Alu 207 296 -16 2520 161 39 9 chrY 8935763 8936328 -15776751 + L1PB4 LINE L1 5322 5903 -253 1313 133 0 5 chrY 8936491 8936686 -15776393 + AluSg SINE Alu 1 194 -116 986 154 0 0 chrY 8936693 8936842 -15776237 + AluSg/x SINE Alu 156 304 -6 447 280 59 0 chrY 8937137 8937323 -15775756 + L1M4b LINE L1 2228 2424 -4535 520 197 38 154 chrY 8937420 8937482 -15775597 + L1M4b LINE L1 2669 2737 -4220 1779 140 38 7 chrY 8937482 8937775 -15775304 + AluSq SINE Alu 1 302 -11 520 197 38 154 chrY 8937775 8938206 -15774873 + L1M4b LINE L1 2737 3105 -3852 898 225 0 0 chrY 8938244 8938413 -15774666 - AluJb SINE Alu -143 169 1 2051 141 0 3 chrY 8939259 8939556 -15773523 + AluSq SINE Alu 1 296 -17 22 35 0 0 chrY 8940243 8940272 -15772807 + AT_rich Low_complexity Low_complexity 1 29 0 1111 214 102 20 chrY 8940663 8940967 -15772112 + MSTD LTR MaLR 1 329 -67 182 118 29 0 chrY 8941467 8941501 -15771578 + (TA)n Simple_repeat Simple_repeat 2 36 0 26 0 0 0 chrY 8941934 8941960 -15771119 + AT_rich Low_complexity Low_complexity 1 26 0 198 0 0 0 chrY 8944185 8944207 -15768872 + (A)n Simple_repeat Simple_repeat 1 22 0 2959 116 116 36 chrY 8944433 8944627 -15768452 - MER4A LTR ERV1 -2 598 421 2274 105 3 0 chrY 8944627 8944932 -15768147 + AluSp SINE Alu 1 306 -7 2959 116 116 36 chrY 8944932 8945291 -15767788 - MER4A LTR ERV1 -179 421 1 226 232 143 0 chrY 8946043 8946099 -15766980 + MIR SINE MIR 49 112 -150 27 0 0 0 chrY 8946392 8946419 -15766660 + AT_rich Low_complexity Low_complexity 1 27 0 6155 102 17 2 chrY 8946552 8947243 -15765836 - L1PA8 LINE L1 -2 6170 5478 2099 85 32 3 chrY 8947243 8947525 -15765554 - AluY SINE Alu -21 290 1 6155 102 17 2 chrY 8947525 8948093 -15764986 - L1PA8 LINE L1 -694 5478 4920 21137 161 15 20 chrY 8948094 8952593 -15760486 - L1M2 LINE L1 -1151 5697 1178 918 215 187 24 chrY 8952617 8953068 -15760011 + LTR61 LTR ERV1 16 595 0 4530 240 24 44 chrY 8953068 8954272 -15758807 - L1M2 LINE L1 -5668 1181 2 814 216 93 0 chrY 8954395 8954599 -15758480 - L1M2 LINE L1 -6242 607 385 29 28 0 0 chrY 8954654 8954690 -15758389 + AT_rich Low_complexity Low_complexity 1 36 0 1941 155 19 7 chrY 8955712 8956021 -15757058 + AluSq SINE Alu 1 313 0 1331 205 13 0 chrY 8956137 8956371 -15756708 + AluJo SINE Alu 1 237 -75 36 23 0 0 chrY 8956373 8956416 -15756663 + AT_rich Low_complexity Low_complexity 1 43 0 1183 177 58 13 chrY 8956590 8956816 -15756263 - AluJo SINE Alu -19 293 58 1108 252 0 0 chrY 8956882 8957120 -15755959 - AluJb SINE Alu -74 238 1 3748 75 21 0 chrY 8957139 8957619 -15755460 - LTR2B LTR ERV1 0 490 1 1291 150 5 0 chrY 8957823 8958036 -15755043 + L1P3 LINE L1 5 218 -6243 3544 120 21 7 chrY 8958037 8958655 -15754424 + L1P LINE L1 2518 3144 -3002 400 176 0 0 chrY 8958659 8958733 -15754346 + L1P LINE L1 4227 4300 -1846 618 298 51 28 chrY 8958785 8959040 -15754039 - MLT2F LTR ERVL -217 446 186 1627 151 0 75 chrY 8959407 8959486 -15753593 + MER41B LTR ERV1 315 398 -237 2381 94 7 0 chrY 8959486 8959794 -15753285 - AluSp SINE Alu -3 310 1 1627 151 0 75 chrY 8959794 8960059 -15753020 + MER41B LTR ERV1 398 633 -2 568 254 0 0 chrY 8960118 8960228 -15752851 - FLAM_A SINE Alu -30 112 3 437 178 0 0 chrY 8960787 8960860 -15752219 - MSTC LTR MaLR -173 255 183 997 153 0 0 chrY 8960866 8961016 -15752063 + AluSg/x SINE Alu 156 305 -7 802 217 33 0 chrY 8961016 8961200 -15751879 - MSTC LTR MaLR -238 190 1 2705 265 85 76 chrY 8961238 8962853 -15750226 - MSTC-int LTR MaLR -25 1710 1 1419 240 149 13 chrY 8962853 8963228 -15749851 - MSTC LTR MaLR 0 428 3 1852 137 14 11 chrY 8963419 8963697 -15749382 + AluSq SINE Alu 2 280 -33 189 0 0 0 chrY 8963697 8963718 -15749361 + (CAAAA)n Simple_repeat Simple_repeat 4 24 0 198 103 0 0 chrY 8963778 8963807 -15749272 + (TA)n Simple_repeat Simple_repeat 1 29 0 307 219 0 0 chrY 8963814 8963878 -15749201 - L1MC4 LINE L1 -1339 6703 6640 1909 149 0 3 chrY 8963891 8964180 -15748899 + AluSq SINE Alu 1 288 -25 593 258 127 27 chrY 8964440 8964700 -15748379 + L1M4 LINE L1 3916 4201 -1945 819 205 82 0 chrY 8964712 8964907 -15748172 + L1M2 LINE L1 5351 5561 -730 4621 267 54 22 chrY 8964923 8966416 -15746663 + L1PBa LINE L1 3 1543 -5320 198 350 136 0 chrY 9066640 9066743 -15646336 + L2 LINE L2 3109 3225 -47 2064 119 20 0 chrY 9066984 9067278 -15645801 + AluSc SINE Alu 1 300 -9 945 183 24 0 chrY 9067287 9067456 -15645623 + FAM SINE Alu 1 173 -2 2063 131 6 29 chrY 9068165 9068508 -15644571 - MER1B DNA MER1_type -2 335 1 1731 130 54 11 chrY 9068900 9069177 -15643902 - AluSg SINE Alu -21 289 1 1653 224 57 28 chrY 9069178 9069673 -15643406 - L1M4 LINE L1 -1669 4477 3969 221 83 28 0 chrY 9069673 9069709 -15643370 + (TCCCC)n Simple_repeat Simple_repeat 5 41 0 2521 74 0 6 chrY 9069718 9070030 -15643049 - AluY SINE Alu -1 310 1 1534 153 12 20 chrY 9070058 9070306 -15642773 - AluJo SINE Alu -66 246 1 891 225 71 55 chrY 9070307 9070618 -15642461 - L1M4 LINE L1 -2358 3788 3473 252 0 0 0 chrY 9070661 9070689 -15642390 + (TA)n Simple_repeat Simple_repeat 1 28 0 266 234 40 57 chrY 9070728 9070852 -15642227 - AluSc SINE Alu -29 270 149 309 287 57 51 chrY 9071343 9071541 -15641538 + MIR SINE MIR 2 191 -63 964 202 0 0 chrY 9072093 9072261 -15640818 + AluJb SINE Alu 134 301 -11 2290 72 0 39 chrY 9072791 9073098 -15639981 + AluY SINE Alu 1 295 -16 252 0 0 0 chrY 9074132 9074160 -15638919 + (A)n Simple_repeat Simple_repeat 1 28 0 444 19 0 0 chrY 9074219 9074272 -15638807 + (TG)n Simple_repeat Simple_repeat 2 54 0 198 0 0 0 chrY 9076242 9076264 -15636815 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 604 163 141 22 chrY 9078079 9078214 -15634865 + L1MD2 LINE L1 6207 6357 -2 1548 184 88 0 chrY 9078309 9078629 -15634450 - MER7A DNA MER2_type 0 346 1 1533 176 3 50 chrY 9078908 9079231 -15633848 + AluJb SINE Alu 1 308 -4 1606 93 42 13 chrY 9079704 9079940 -15633139 + AluSq SINE Alu 1 243 -70 184 260 0 0 chrY 9081310 9081360 -15631719 - L2 LINE L2 -6 3266 3217 200 224 104 30 chrY 9081363 9081398 -15631681 + MIR SINE MIR 72 103 -105 2415 75 0 0 chrY 9081398 9081693 -15631386 - AluSc SINE Alu -14 295 1 200 224 104 30 chrY 9081693 9081724 -15631355 + MIR SINE MIR 103 143 -65 851 142 54 14 chrY 9081933 9082081 -15630998 + FRAM SINE Alu 1 154 -22 379 323 145 0 chrY 9082281 9082563 -15630516 + L1MC4a LINE L1 5273 5595 -2213 903 205 0 6 chrY 9082565 9082731 -15630348 + FRAM SINE Alu 1 159 -17 2108 132 0 0 chrY 9082739 9083026 -15630053 + AluSx SINE Alu 1 287 -25 318 267 148 5 chrY 9083104 9083314 -15629765 + L1MC4a LINE L1 5672 5911 -1897 858 123 0 0 chrY 9083349 9083471 -15629608 + L1M2 LINE L1 3 124 -6725 433 326 158 20 chrY 9083617 9083921 -15629158 - L3 LINE CR1 -896 681 336 480 129 439 0 chrY 9086919 9086997 -15626082 + MER3 DNA MER1_type 20 63 -146 2349 101 3 0 chrY 9086997 9087305 -15625774 - AluSq SINE Alu -4 309 1 480 129 439 0 chrY 9087305 9087358 -15625721 + MER3 DNA MER1_type 63 209 0 230 192 19 0 chrY 9087397 9087449 -15625630 + L2 LINE L2 3261 3313 0 351 0 0 0 chrY 9088287 9088326 -15624753 + (A)n Simple_repeat Simple_repeat 1 39 0 281 250 50 25 chrY 9088735 9088815 -15624264 - L2 LINE L2 -38 3234 3153 455 245 122 0 chrY 9089623 9089770 -15623309 - MER104 DNA Tc2 -15 165 1 299 286 15 53 chrY 9089840 9089973 -15623106 - MIR SINE MIR -72 190 63 224 350 79 20 chrY 9090837 9091040 -15622039 + L3b LINE CR1 1117 1331 -252 1797 295 123 25 chrY 9091473 9092518 -15620561 + L2 LINE L2 1587 2734 -580 367 247 89 100 chrY 9092879 9093397 -15619682 + L1MEd LINE L1 686 1197 -4922 2442 41 49 8 chrY 9093455 9093820 -15619259 - L1PA4 LINE L1 0 6155 5776 2388 228 86 30 chrY 9093920 9094048 -15619031 - L2 LINE L2 -838 2476 2357 2195 114 7 7 chrY 9094048 9094354 -15618725 - AluSx SINE Alu -6 306 1 2388 228 86 30 chrY 9094354 9094996 -15618083 - L2 LINE L2 -957 2357 1663 467 221 93 83 chrY 9095064 9095337 -15617742 + MLT1J2 LTR MaLR 85 370 -55 698 142 13 184 chrY 9095337 9095570 -15617509 + 7SK RNA RNA 1 193 0 467 221 93 83 chrY 9095570 9095619 -15617460 + MLT1J2 LTR MaLR 370 417 -8 336 219 124 0 chrY 9095626 9095731 -15617348 - L2 LINE L2 -1648 1666 1549 215 191 21 0 chrY 9095750 9095797 -15617282 + MIR3 SINE MIR 127 174 -34 235 333 111 7 chrY 9099644 9099797 -15613282 + L3b LINE CR1 1276 1444 -139 225 132 0 0 chrY 9099810 9099848 -15613231 + (TG)n Simple_repeat Simple_repeat 1 38 0 541 288 31 31 chrY 9100501 9100723 -15612356 + L3 LINE CR1 1308 1529 -48 1291 194 12 10 chrY 9102088 9102386 -15610693 - L1MB2 LINE L1 -34 6134 5846 465 331 115 13 chrY 9103544 9103858 -15609221 + L2 LINE L2 2967 3312 -1 697 297 84 7 chrY 9103860 9104156 -15608923 + L2 LINE L2 2994 3312 -1 1223 254 56 21 chrY 9104424 9104802 -15608277 - L1MC4 LINE L1 -130 7912 7522 393 219 66 147 chrY 9104861 9105289 -15607790 - L1MC4a LINE L1 -1558 6250 5868 2204 108 3 34 chrY 9105289 9105612 -15607467 + AluSp SINE Alu 1 313 0 393 219 66 147 chrY 9105612 9105695 -15607384 - L1MC4a LINE L1 -1940 5868 5780 1782 171 43 29 chrY 9105802 9106153 -15606926 + MLT1B LTR MaLR 33 388 -2 312 252 114 48 chrY 9107705 9107915 -15605164 - L1ME4a LINE L1 -2 6119 5896 302 265 115 70 chrY 9107964 9108164 -15604915 - L1MC4 LINE L1 -312 7730 7522 1955 138 3 3 chrY 9110450 9110746 -15602333 + AluJb SINE Alu 1 296 -16 2387 53 7 20 chrY 9111086 9111389 -15601690 + AluY SINE Alu 1 299 -12 631 281 157 38 chrY 9112347 9112817 -15600262 - L1ME4a LINE L1 -2028 5780 5255 3560 172 19 61 chrY 9113216 9113985 -15599094 - L1MB7 LINE L1 -19 6165 5429 186 133 0 0 chrY 9114240 9114270 -15598809 + (GA)n Simple_repeat Simple_repeat 1 30 0 224 276 33 91 chrY 9114672 9114826 -15598253 - MIR SINE MIR -76 186 43 34 79 0 0 chrY 9115460 9115536 -15597543 + AT_rich Low_complexity Low_complexity 1 76 0 915 139 0 0 chrY 9115826 9115955 -15597124 + FLAM_C SINE Alu 2 130 -3 1495 196 39 6 chrY 9117950 9118262 -15594817 + MER33 DNA MER1_type 3 324 0 2072 136 3 0 chrY 9118624 9118925 -15594154 + AluSx SINE Alu 1 302 -10 1591 133 39 142 chrY 9118932 9119269 -15593810 + AluJb SINE Alu 1 302 0 1643 214 74 53 chrY 9119424 9119882 -15593197 - MLT1F LTR MaLR -9 533 60 406 283 80 0 chrY 9119944 9120057 -15593022 - MIR SINE MIR -62 146 25 207 69 0 0 chrY 9120940 9120969 -15592110 + (TG)n Simple_repeat Simple_repeat 2 30 0 1999 141 7 3 chrY 9121091 9121381 -15591698 + AluSx SINE Alu 1 291 -21 653 249 122 5 chrY 9121387 9121608 -15591471 - MIR SINE MIR -3 259 13 186 43 0 0 chrY 9122184 9122207 -15590872 + (TTG)n Simple_repeat Simple_repeat 2 24 0 459 244 108 131 chrY 9122390 9122478 -15590601 + L2 LINE L2 2926 3015 -257 872 150 0 0 chrY 9122478 9122598 -15590481 + FLAM_C SINE Alu 1 120 -13 459 244 108 131 chrY 9122598 9122853 -15590226 + L2 LINE L2 3015 3261 -11 24 77 0 0 chrY 9123891 9123943 -15589136 + AT_rich Low_complexity Low_complexity 1 52 0 2211 117 7 3 chrY 9124241 9124540 -15588539 - AluSx SINE Alu -12 300 1 1787 148 6 46 chrY 9124890 9125214 -15587865 - AluJb SINE Alu -1 311 1 2530 132 40 2 chrY 9125215 9125610 -15587469 - L1MC1 LINE L1 -10 6323 5914 306 39 58 0 chrY 9126930 9126982 -15586097 + (TA)n Simple_repeat Simple_repeat 2 56 0 234 0 0 0 chrY 9127300 9127326 -15585753 + (TTTTTG)n Simple_repeat Simple_repeat 3 28 0 818 277 73 108 chrY 9128466 9128678 -15584401 - L1MC1 LINE L1 -831 5315 5097 2131 113 0 0 chrY 9128678 9128969 -15584110 - AluY SINE Alu -20 291 1 818 277 73 108 chrY 9128969 9130877 -15582202 - L1MC1 LINE L1 -1049 5097 3714 269 297 42 42 chrY 9130991 9131321 -15581758 - L1MC1 LINE L1 -2845 3301 2972 1719 152 19 39 chrY 9131474 9131784 -15581295 - AluJb SINE Alu -8 304 1 783 297 14 40 chrY 9132135 9132431 -15580648 - L2 LINE L2 -656 2658 2371 981 162 60 5 chrY 9132483 9132668 -15580411 + MSTD LTR MaLR 1 195 -201 353 134 0 15 chrY 9132758 9132825 -15580254 + (TCCC)n Simple_repeat Simple_repeat 3 68 0 298 206 0 15 chrY 9132825 9132893 -15580186 + MSTD LTR MaLR 391 457 0 568 328 83 28 chrY 9132948 9133274 -15579805 + L2 LINE L2 2914 3257 -15 * 1988 259 109 34 chrY 9133273 9134318 -15578761 - L2 LINE L2 -1 3312 2170 279 239 161 71 chrY 9135531 9135686 -15577393 - L2 LINE L2 0 3272 3104 194 244 160 34 chrY 9135838 9135957 -15577122 + L3 LINE CR1 1218 1351 -226 2039 95 37 0 chrY 9136207 9136507 -15576572 - AluSq SINE Alu 0 310 1 1676 170 0 0 chrY 9137403 9137674 -15575405 - AluJo SINE Alu -1 311 41 22 0 0 0 chrY 9137965 9137987 -15575092 + AT_rich Low_complexity Low_complexity 1 22 0 299 306 109 14 chrY 9138135 9138282 -15574797 + MIR SINE MIR 49 209 -53 722 296 110 44 chrY 9138411 9138729 -15574350 - L2 LINE L2 0 3313 2975 6182 189 62 24 chrY 9138741 9140063 -15573016 + Charlie1a DNA MER1_type 15 1394 -1367 2182 94 0 7 chrY 9140063 9140340 -15572739 - AluSx SINE Alu -17 295 21 6182 189 62 24 chrY 9140340 9140400 -15572679 + Charlie1a DNA MER1_type 1394 1450 -5 245 238 88 88 chrY 9140429 9140610 -15572469 - L1MDa LINE L1 -1687 4528 4348 981 260 113 30 chrY 9140625 9140654 -15572425 - L1MDa LINE L1 -2887 3328 3303 1038 244 23 5 chrY 9140654 9140871 -15572208 + MER58A DNA MER1_type 4 224 0 981 260 113 30 chrY 9140871 9141045 -15572034 - L1MDa LINE L1 -2912 3303 3145 423 62 0 31 chrY 9141045 9141110 -15571969 + L1PA8 LINE L1 6110 6172 0 981 260 113 30 chrY 9141110 9141471 -15571608 - L1MDa LINE L1 -3070 3145 2716 259 283 130 7 chrY 9141608 9141676 -15571403 - L1MDa LINE L1 -3698 2517 2459 2080 132 0 16 chrY 9141676 9141699 -15571380 - AluSx SINE Alu -6 306 284 186 43 0 0 chrY 9141699 9141722 -15571357 + (TCTA)n Simple_repeat Simple_repeat 4 26 0 2080 132 0 16 chrY 9141722 9142009 -15571070 - AluSx SINE Alu -28 284 1 259 283 130 7 chrY 9142009 9142078 -15571001 - L1MDa LINE L1 -3756 2459 2363 385 284 54 54 chrY 9142085 9142289 -15570790 - L1MDa LINE L1 -4038 2358 2155 646 289 85 47 chrY 9142466 9142567 -15570512 - L1MDa LINE L1 -4549 1666 1570 1575 207 13 10 chrY 9142567 9142867 -15570212 - AluJo SINE Alu -11 301 1 646 289 85 47 chrY 9142867 9143259 -15569820 - L1MDa LINE L1 -4645 1570 1311 45255 39 1 1 chrY 9143270 9148988 -15564091 + L1P2 LINE L1 2 5716 -439 227 306 0 14 chrY 9148928 9149000 -15564079 - L1P2 LINE L1 -434 5720 5650 * 1788 109 10 33 chrY 9149112 9149415 -15563664 - AluSx SINE Alu -16 296 1 243 293 104 73 chrY 9149965 9150129 -15562950 + L2 LINE L2 3103 3271 -1 246 81 0 0 chrY 9150758 9150795 -15562284 + (T)n Simple_repeat Simple_repeat 1 37 0 210 147 29 0 chrY 9153865 9153899 -15559180 - MIR SINE MIR -6 256 222 877 247 87 4 chrY 9155032 9155263 -15557816 - MIR SINE MIR -5 257 8 902 168 119 5 chrY 9155730 9155915 -15557164 + MLT1D LTR MaLR 1 206 -299 786 173 15 15 chrY 9156176 9156309 -15556770 - FLAM_A SINE Alu 0 133 1 2230 97 10 7 chrY 9156313 9156621 -15556458 - AluSq SINE Alu -4 309 1 418 301 74 81 chrY 9157271 9157493 -15555586 + L2 LINE L2 2855 3074 -198 2513 102 16 38 chrY 9157493 9157865 -15555214 + THE1B LTR MaLR 1 364 0 418 301 74 81 chrY 9157865 9158061 -15555018 + L2 LINE L2 3074 3270 -2 2389 79 3 7 chrY 9160076 9160379 -15552700 + AluSp SINE Alu 2 303 -10 2123 146 0 0 chrY 9160399 9160701 -15552378 - AluSx SINE Alu -10 302 1 711 161 0 9 chrY 9162448 9162560 -15550519 + FLAM_C SINE Alu 21 131 -12 378 283 62 0 chrY 9163718 9163831 -15549248 + L3 LINE CR1 1211 1330 -247 2125 122 3 7 chrY 9164242 9164538 -15548541 + AluSx SINE Alu 1 295 -17 1099 126 45 93 chrY 9164953 9165199 -15547880 - L1MB2 LINE L1 -2 6169 5936 3970 174 18 41 chrY 9165206 9165834 -15547245 - L1MB2 LINE L1 0 6155 5567 1768 188 13 0 chrY 9165834 9166142 -15546937 + AluJb SINE Alu 1 312 0 3970 174 18 41 chrY 9166142 9166679 -15546400 - L1MB2 LINE L1 -588 5567 5019 389 256 101 8 chrY 9169026 9169155 -15543924 + MIR3 SINE MIR 3 143 -65 638 219 26 31 chrY 9169163 9169355 -15543724 - LTR33A LTR ERVL -17 506 316 242 258 116 58 chrY 9169453 9169678 -15543401 - LTR50 LTR ERVL -557 238 1 300 313 15 15 chrY 9170037 9170168 -15542911 - ERVL LTR ERVL -3970 1794 1664 396 0 0 0 chrY 9170276 9170320 -15542759 + (TG)n Simple_repeat Simple_repeat 1 44 0 976 184 46 23 chrY 9170345 9170519 -15542560 + MER45A DNA AcHobo 1 178 0 226 323 71 0 chrY 9170525 9170624 -15542455 - L2 LINE L2 -222 3091 2986 * 267 298 71 90 chrY 9170621 9170876 -15542203 + L2 LINE L2 2963 3212 -60 508 210 7 116 chrY 9170924 9171062 -15542017 - MIR SINE MIR -93 169 47 969 143 0 0 chrY 9171137 9171270 -15541809 + FLAM_C SINE Alu 1 133 0 1576 204 4 11 chrY 9171580 9171860 -15541219 + AluJb SINE Alu 3 280 -32 23 0 0 0 chrY 9171862 9171885 -15541194 + AT_rich Low_complexity Low_complexity 1 23 0 917 153 0 0 chrY 9171888 9172019 -15541060 + FLAM_C SINE Alu 1 131 -2 188 317 49 0 chrY 9173363 9173445 -15539634 - L3 LINE CR1 -505 1072 987 388 300 57 14 chrY 9174188 9174328 -15538751 + MIR SINE MIR 36 181 -81 187 256 23 0 chrY 9174328 9174371 -15538708 + L2 LINE L2 3217 3260 -12 1525 51 22 0 chrY 9174930 9175108 -15537971 + L1PA3 LINE L1 5974 6155 0 231 377 41 25 chrY 9175723 9175845 -15537234 - L2 LINE L2 -13 3259 3136 2091 107 7 7 chrY 9177358 9177648 -15535431 - AluSc SINE Alu -19 290 1 1589 166 13 26 chrY 9177648 9177955 -15535124 - AluJo SINE Alu -9 303 1 3661 238 57 36 chrY 9177958 9179560 -15533519 - L1MEc LINE L1 -2780 3435 1829 5230 236 65 28 chrY 9179561 9180115 -15532964 - L1MEc LINE L1 -4683 1713 1181 1700 157 89 7 chrY 9180115 9180396 -15532683 - AluSx SINE Alu -8 304 1 5230 236 65 28 chrY 9180396 9181460 -15531619 - L1MEc LINE L1 -5215 1181 36 403 339 38 21 chrY 9182250 9182436 -15530643 + MIR3 SINE MIR 17 205 -3 2326 143 82 12 chrY 9183127 9183527 -15529552 + MSTC LTR MaLR 1 428 0 207 125 0 0 chrY 9184165 9184205 -15528874 + (A)n Simple_repeat Simple_repeat 1 40 0 2232 115 0 0 chrY 9185177 9185464 -15527615 + AluSx SINE Alu 1 287 -25 1114 272 42 26 chrY 9185660 9186042 -15527037 + L1ME3A LINE L1 5560 5947 -223 2712 102 58 17 chrY 9186071 9186482 -15526597 + MSTA LTR MaLR 1 428 0 1694 182 60 12 chrY 9186482 9186822 -15526257 + MLT1A1 LTR MaLR 9 365 0 353 279 142 33 chrY 9186833 9187016 -15526063 + L1ME3A LINE L1 5941 6143 -27 255 278 211 0 chrY 9187380 9187470 -15525609 + MIR3 SINE MIR 97 205 -3 249 308 187 39 chrY 9190555 9190737 -15522342 + MIR SINE MIR 53 261 -1 257 284 156 0 chrY 9191391 9191500 -15521579 + MIR SINE MIR 13 138 -124 745 264 16 16 chrY 9191617 9191799 -15521280 + MIR SINE MIR 7 188 -74 247 284 80 11 chrY 9192121 9192209 -15520870 + MIR SINE MIR 56 149 -113 546 284 87 31 chrY 9192249 9192538 -15520541 + L2 LINE L2 2988 3292 -21 19424 31 2 0 chrY 9193284 9196242 -15516837 + L1PA4 LINE L1 3194 6155 0 306 342 25 25 chrY 9198603 9198761 -15514318 - MIR3 SINE MIR -18 190 33 433 264 40 30 chrY 9199344 9199545 -15513534 - L1MC4 LINE L1 -4 8038 7836 924 226 54 21 chrY 9199593 9199872 -15513207 - L1ME2 LINE L1 -10 6154 5867 2445 148 38 49 chrY 9200540 9201012 -15512067 + MLT1C LTR MaLR 1 467 0 1086 231 87 13 chrY 9201056 9201367 -15511712 - L1ME3A LINE L1 -17 6153 5820 2002 122 11 11 chrY 9201633 9201920 -15511159 + AluSg SINE Alu 3 289 -21 2127 127 3 0 chrY 9201950 9202250 -15510829 - AluSx SINE Alu -11 301 1 998 184 87 0 chrY 9202252 9202459 -15510620 + L1ME1 LINE L1 4475 4699 -1447 824 193 17 28 chrY 9202502 9202612 -15510467 + AluJb SINE Alu 1 111 -201 432 37 0 0 chrY 9202612 9202666 -15510413 + (CA)n Simple_repeat Simple_repeat 1 54 0 2069 104 4 0 chrY 9202668 9202937 -15510142 - AluSg SINE Alu -19 291 22 824 193 17 28 chrY 9202937 9202999 -15510080 + AluJb SINE Alu 112 174 -138 232 179 179 45 chrY 9202999 9203085 -15509994 + AluJ/FRAM SINE Alu 222 302 0 3748 201 63 14 chrY 9203188 9204509 -15508570 + L1ME1 LINE L1 4786 6334 0 2250 113 0 3 chrY 9204634 9204936 -15508143 + AluSq SINE Alu 1 301 -12 300 27 0 0 chrY 9205703 9205740 -15507339 + (TTTC)n Simple_repeat Simple_repeat 1 37 0 319 333 49 10 chrY 9206798 9206900 -15506179 - MER91C DNA MER1_type -2 138 33 338 272 9 44 chrY 9206993 9207107 -15505972 - MER102a DNA MER1_type 0 330 221 864 146 0 0 chrY 9207133 9207256 -15505823 + FLAM_A SINE Alu 1 123 -10 1927 104 0 4 chrY 9207263 9207514 -15505565 + AluSg SINE Alu 39 288 -22 26 0 0 0 chrY 9207514 9207540 -15505539 + AT_rich Low_complexity Low_complexity 1 26 0 1781 178 0 7 chrY 9207681 9207984 -15505095 + AluJo SINE Alu 1 301 -11 466 187 0 0 chrY 9208362 9208437 -15504642 - FLAM SINE Alu -21 122 48 275 242 108 33 chrY 9210408 9210528 -15502551 + L3b LINE CR1 1368 1496 -87 195 280 0 0 chrY 9210919 9210969 -15502110 + MIR SINE MIR 83 132 -76 792 272 246 14 chrY 9210976 9211454 -15501625 - L2 LINE L2 0 3313 2737 332 215 0 0 chrY 9214521 9214586 -15498493 + MLT1H LTR MaLR 263 327 -222 819 214 114 15 chrY 9214612 9214813 -15498266 - MER58A DNA MER1_type -2 222 2 523 134 31 118 chrY 9214830 9214957 -15498122 + MLT1H LTR MaLR 431 546 -3 335 354 82 6 chrY 9215223 9215381 -15497698 + L2 LINE L2 3103 3272 0 204 350 45 23 chrY 9216366 9216543 -15496536 - L2 LINE L2 -264 3008 2828 184 318 34 45 chrY 9216872 9216960 -15496119 - L2 LINE L2 0 3272 3186 247 257 54 68 chrY 9217043 9217117 -15495962 + L2 LINE L2 3191 3263 -9 478 242 0 0 chrY 9217120 9217211 -15495868 - L2 LINE L2 0 3313 3223 224 283 71 26 chrY 9217456 9217569 -15495510 - L2 LINE L2 -4 3309 3192 180 209 15 60 chrY 9217978 9218045 -15495034 - L2 LINE L2 -3140 174 111 223 241 17 0 chrY 9218170 9218228 -15494851 + CT-rich Low_complexity Low_complexity 2 60 0 220 150 25 88 chrY 9218968 9219048 -15494031 + GA-rich Low_complexity Low_complexity 3 77 0 233 274 53 62 chrY 9219222 9219335 -15493744 - MIR SINE MIR -32 230 119 705 306 128 20 chrY 9219763 9220162 -15492917 - L3 LINE CR1 -32 1545 1104 813 197 11 44 chrY 9220163 9220346 -15492733 - FRAM SINE Alu 0 176 1 379 322 91 7 chrY 9220347 9220490 -15492589 - L3 LINE CR1 -466 1111 957 308 304 78 37 chrY 9220554 9220745 -15492334 - L2 LINE L2 -165 3107 2909 2370 121 74 2 chrY 9220850 9221254 -15491825 - Tigger2 DNA MER2_type -5 2713 2281 433 127 0 0 chrY 9221261 9221324 -15491755 - Tigger2 DNA MER2_type -2655 63 1 389 232 81 85 chrY 9227857 9228068 -15485011 - MIR SINE MIR -52 210 1 375 191 51 51 chrY 9231780 9231937 -15481142 + L1ME4a LINE L1 5965 6121 0 3296 137 21 21 chrY 9235010 9235614 -15477465 - L1MB3 LINE L1 -7 6176 5573 409 193 18 28 chrY 9235623 9235732 -15477347 - L1MC2 LINE L1 0 6344 6237 188 333 0 0 chrY 9235956 9236013 -15477066 - MIR3 SINE MIR -16 192 136 2601 89 31 31 chrY 9236935 9237349 -15475730 - L1MA1 LINE L1 0 6302 5889 1037 183 16 0 chrY 9237799 9237985 -15475094 + MER5A DNA MER1_type 1 189 0 340 200 93 50 chrY 9238796 9238921 -15474158 - L1ME4a LINE L1 -2 6119 5986 871 221 80 55 chrY 9238921 9239247 -15473832 - MER46C DNA MER2_type -2 336 3 340 200 93 50 chrY 9239247 9239261 -15473818 - L1ME4a LINE L1 -135 5986 5974 506 277 118 33 chrY 9239324 9239653 -15473426 - L1ME4a LINE L1 -252 5869 5513 183 219 141 16 chrY 9239761 9239825 -15473254 + L3b LINE CR1 1271 1342 -241 35 0 0 0 chrY 9241475 9241510 -15471569 + AT_rich Low_complexity Low_complexity 1 35 0 414 280 227 0 chrY 9241907 9242039 -15471040 + MIR3 SINE MIR 16 177 -31 1012 189 35 0 chrY 9242611 9242812 -15470267 + MER3 DNA MER1_type 2 209 0 241 308 29 39 chrY 9242889 9242993 -15470086 - L2 LINE L2 -6 3266 3164 493 293 72 19 chrY 9343471 9343734 -15369345 + HAL1b LINE L1 714 990 -358 240 291 47 0 chrY 9343795 9343881 -15369198 - MER68 LTR ERV1 -469 93 4 1688 186 3 17 chrY 9344010 9344311 -15368768 + AluSx SINE Alu 1 297 -15 188 222 16 127 chrY 9344926 9344989 -15368090 - L2 LINE L2 -33 3239 3184 1931 130 79 23 chrY 9345864 9346218 -15366861 + THE1C LTR MaLR 1 374 -1 349 235 25 0 chrY 9346297 9346376 -15366703 + MER20 DNA MER1_type 32 112 -107 1747 181 115 13 chrY 9346376 9346768 -15366311 + LTR51 LTR ERV1 1 432 -239 * 2405 133 46 14 chrY 9346765 9347200 -15365879 + HSMAR2 DNA Mariner 854 1302 0 1177 313 75 47 chrY 9347200 9348203 -15364876 + L1MEc LINE L1 117 1091 -5305 2256 123 3 0 chrY 9348203 9348512 -15364567 + AluSp SINE Alu 1 310 -3 1177 313 75 47 chrY 9348512 9348556 -15364523 + L1MEc LINE L1 1091 1132 -5264 246 32 0 0 chrY 9348556 9348587 -15364492 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1177 313 75 47 chrY 9348587 9349016 -15364063 + L1MEc LINE L1 1132 1548 -4848 1455 138 36 4 chrY 9349016 9349241 -15363838 + AluY SINE Alu 43 274 -37 255 31 0 0 chrY 9349245 9349277 -15363802 + (CA)n Simple_repeat Simple_repeat 1 32 0 1177 313 75 47 chrY 9349277 9349628 -15363451 + L1MEc LINE L1 1550 2002 -4394 581 285 74 29 chrY 9349634 9350368 -15362711 + L1MEc LINE L1 2790 3556 -2659 2034 125 3 0 chrY 9350445 9350740 -15362339 - AluY SINE Alu -15 296 1 231 143 33 33 chrY 9351190 9351281 -15361798 + (TA)n Simple_repeat Simple_repeat 2 92 0 475 361 33 0 chrY 9351798 9351981 -15361098 + MER5A DNA MER1_type 1 189 0 30 0 0 0 chrY 9352222 9352252 -15360827 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chrY 9353204 9353226 -15359853 + AT_rich Low_complexity Low_complexity 1 22 0 3021 171 8 28 chrY 9353351 9353998 -15359081 + MER41B LTR ERV1 1 475 -11 777 201 13 13 chrY 9354440 9354589 -15358490 + AluJo SINE Alu 1 149 -163 1150 196 0 0 chrY 9354589 9354773 -15358306 - AluSx SINE Alu -127 185 2 205 204 86 108 chrY 9355234 9355327 -15357752 - MIR3 SINE MIR -103 105 15 635 202 0 0 chrY 9355357 9355476 -15357603 + FLAM_C SINE Alu 1 119 -24 1203 153 14 0 chrY 9355825 9356047 -15357032 - MLT1B LTR MaLR -4 386 162 1396 209 26 14 chrY 9356051 9356419 -15356660 - MLT1B LTR MaLR 0 396 20 528 141 0 0 chrY 9356585 9356677 -15356402 - L1PB1 LINE L1 -2 6149 6058 3924 158 124 47 chrY 9356680 9358118 -15354961 - pTR5 LTR ERV1 0 2438 743 1538 147 106 6 chrY 9358118 9358378 -15354701 - L1PB1 LINE L1 -90 6061 5762 330 26 0 0 chrY 9358378 9358417 -15354662 + (TCTA)n Simple_repeat Simple_repeat 1 39 0 1538 147 106 6 chrY 9358417 9358476 -15354603 - L1PB1 LINE L1 -389 5762 5710 296 184 39 68 chrY 9358921 9359024 -15354055 + LTR12 LTR ERV1 239 338 -376 374 219 7 75 chrY 9359048 9359194 -15353885 + pTR5 LTR ERV1 19 154 -2284 634 67 0 0 chrY 9359584 9359673 -15353406 - L1PA5 LINE L1 -3 6151 6063 1121 229 47 7 chrY 9359706 9360003 -15353076 + L1MC2 LINE L1 5978 6286 -58 2426 84 0 0 chrY 9360842 9361152 -15351927 - AluY SINE Alu -1 310 1 385 327 138 42 chrY 9361470 9362129 -15350950 + L2 LINE L2 2200 2969 -303 341 177 35 50 chrY 9363066 9363207 -15349872 + (TA)n Simple_repeat Simple_repeat 1 139 0 22 0 0 0 chrY 9363410 9363432 -15349647 + AT_rich Low_complexity Low_complexity 1 22 0 7726 75 15 1 chrY 9363628 9364621 -15348458 - LTR13 LTR ERVK 0 1007 1 476 171 12 0 chrY 9364786 9364868 -15348211 - AluSg/x SINE Alu -18 291 209 2460 127 65 0 chrY 9365271 9365658 -15347421 - L1PA10 LINE L1 -2 6166 5755 461 209 34 57 chrY 9366579 9366663 -15346416 + MER3 DNA MER1_type 32 116 -93 872 199 27 59 chrY 9366663 9366884 -15346195 - MER20 DNA MER1_type -4 215 2 461 209 34 57 chrY 9366884 9366976 -15346103 + MER3 DNA MER1_type 116 204 -5 815 88 7 59 chrY 9367003 9367139 -15345940 + L1MA1 LINE L1 6172 6300 -2 3289 161 61 50 chrY 9368545 9369495 -15343584 + pTR5 LTR ERV1 743 2028 -410 298 213 43 32 chrY 9369496 9369590 -15343489 + LTR30 LTR ERV1 548 642 -80 1192 121 1 7 chrY 9369590 9369785 -15343294 + pTR5 LTR ERV1 66 392 -2046 1221 162 81 7 chrY 9369877 9370149 -15342930 + L1MB3 LINE L1 5869 6160 -23 852 130 5 32 chrY 9370164 9370349 -15342730 + (GGA)n Simple_repeat Simple_repeat 1 180 0 561 139 9 17 chrY 9370328 9370443 -15342636 + GA-rich Low_complexity Low_complexity 1 114 0 * 405 198 198 12 chrY 9371102 9371248 -15341831 + MER5A DNA MER1_type 4 180 -9 251 320 39 0 chrY 9372004 9372107 -15340972 + MLT1I LTR MaLR 68 174 -235 1972 126 4 0 chrY 9372456 9372726 -15340353 - AluSx SINE Alu -11 301 31 261 57 0 0 chrY 9372780 9372815 -15340264 + (A)n Simple_repeat Simple_repeat 1 35 0 978 167 20 5 chrY 9372842 9373040 -15340039 + L1MB2 LINE L1 5940 6140 -31 352 150 33 0 chrY 9373064 9373124 -15339955 - AluJ/FRAM SINE Alu -14 288 227 1017 238 44 75 chrY 9373580 9374127 -15338952 + MER34 LTR ERV1 4 533 -9 264 30 0 0 chrY 9375159 9375192 -15337887 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 390 257 21 43 chrY 9375301 9375441 -15337638 - MIR SINE MIR -61 201 65 644 272 0 37 chrY 9375705 9375896 -15337183 + MER5A DNA MER1_type 3 186 -3 27 62 0 0 chrY 9376119 9376167 -15336912 + AT_rich Low_complexity Low_complexity 1 48 0 674 60 60 0 chrY 9376193 9376293 -15336786 + L1P LINE L1 3358 3463 -2683 26594 125 16 12 chrY 9376754 9382557 -15330522 + L1PA7 LINE L1 622 6467 -2 318 240 16 8 chrY 9382602 9382727 -15330352 + GA-rich Low_complexity Low_complexity 2 127 0 986 115 22 7 chrY 9382728 9382867 -15330212 - AluSg1 SINE Alu -168 141 1 1584 161 12 62 chrY 9383221 9383544 -15329535 + AluSx SINE Alu 1 307 -5 5318 96 30 28 chrY 9384371 9385150 -15327929 - LTR17 LTR ERV1 0 780 1 1768 179 0 13 chrY 9386712 9387019 -15326060 + AluJo SINE Alu 1 303 -9 545 187 69 149 chrY 9388186 9388561 -15324518 - LTR37A LTR ERV1 -1 425 81 2200 110 10 0 chrY 9388821 9389122 -15323957 + AluSq SINE Alu 1 304 -9 1096 267 46 3 chrY 9389207 9389533 -15323546 + MER58B DNA MER1_type 1 340 -1 324 247 43 11 chrY 9389576 9389669 -15323410 + LTR48B LTR ERV1 1 96 -548 780 224 115 57 chrY 9389737 9390086 -15322993 + MER39 LTR ERV1 333 701 -6 285 337 0 11 chrY 9390324 9390413 -15322666 + MIR3 SINE MIR 106 193 -15 324 0 0 0 chrY 9391387 9391423 -15321656 + (TA)n Simple_repeat Simple_repeat 2 37 0 2068 140 0 3 chrY 9391487 9391795 -15321284 + AluSx SINE Alu 1 307 -5 289 178 0 0 chrY 9391901 9391946 -15321133 + Alu SINE Alu 1 45 -254 785 183 102 0 chrY 9391946 9392083 -15320996 + AluSg/x SINE Alu 137 287 -25 375 23 0 0 chrY 9392083 9392127 -15320952 + (TGAA)n Simple_repeat Simple_repeat 3 46 0 201 225 169 28 chrY 9392567 9392638 -15320441 + MIR SINE MIR 67 147 -115 644 277 90 77 chrY 9392704 9393170 -15319909 - MLT1J LTR MaLR -38 473 2 205 256 0 0 chrY 9393217 9393260 -15319819 + L2 LINE L2 3210 3252 -20 22 35 0 0 chrY 9393266 9393295 -15319784 + AT_rich Low_complexity Low_complexity 1 29 0 964 236 19 5 chrY 9393347 9393563 -15319516 - MER20 DNA MER1_type 0 219 1 2065 192 55 0 chrY 9393701 9394117 -15318962 - MER65C LTR ERV1 -22 439 1 477 300 167 45 chrY 9394255 9394585 -15318494 - L2 LINE L2 0 3313 2944 1855 180 3 3 chrY 9394628 9394934 -15318145 + AluSx SINE Alu 1 306 -6 267 152 0 0 chrY 9395057 9395103 -15317976 + (CATATA)n Simple_repeat Simple_repeat 3 48 0 2295 47 44 3 chrY 9395107 9395404 -15317675 - AluY SINE Alu -2 309 1 288 330 75 10 chrY 9395410 9395610 -15317469 - L2 LINE L2 -602 2712 2500 187 373 0 0 chrY 9395809 9395884 -15317195 + MIR SINE MIR 71 145 -117 2118 137 3 0 chrY 9397008 9397308 -15315771 - AluY SINE Alu -10 301 1 2177 110 3 0 chrY 9397610 9397902 -15315177 + AluSg SINE Alu 1 293 -17 353 264 100 0 chrY 9398159 9398299 -15314780 + L1MD2 LINE L1 6194 6347 -12 21 0 0 0 chrY 9398453 9398474 -15314605 + AT_rich Low_complexity Low_complexity 1 21 0 1568 178 201 8 chrY 9398816 9399175 -15313904 - MSTA LTR MaLR 0 428 1 205 415 0 0 chrY 9399216 9399334 -15313745 + MIR SINE MIR 84 201 -61 1459 159 92 28 chrY 9399695 9400084 -15312995 - L1MB7 LINE L1 -7 6177 5764 22 0 0 0 chrY 9401657 9401679 -15311400 + AT_rich Low_complexity Low_complexity 1 22 0 275 342 71 7 chrY 9401689 9401844 -15311235 - MIR SINE MIR -29 233 69 21 0 0 0 chrY 9402097 9402118 -15310961 + AT_rich Low_complexity Low_complexity 1 21 0 2554 118 0 11 chrY 9402192 9402558 -15310521 + THE1B LTR MaLR 1 362 -2 230 273 15 0 chrY 9402975 9403041 -15310038 + MIR SINE MIR 164 230 -32 2139 130 3 0 chrY 9403403 9403704 -15309375 + AluSp SINE Alu 1 302 -11 1599 118 27 8 chrY 9404597 9404859 -15308220 + L1MC1 LINE L1 6066 6332 -1 892 184 12 12 chrY 9404967 9405135 -15307944 + AluSg/x SINE Alu 132 299 -11 181 162 54 0 chrY 9405260 9405297 -15307782 + L2 LINE L2 3022 3060 -212 24 53 0 0 chrY 9405774 9405812 -15307267 + AT_rich Low_complexity Low_complexity 1 38 0 898 184 38 52 chrY 9405857 9406069 -15307010 - MER2 DNA MER2_type -107 238 30 38724 66 6 5 chrY 9406325 9412465 -15300614 + L1PA4 LINE L1 1 6149 -6 506 122 31 20 chrY 9412465 9412563 -15300516 - L1MB7 LINE L1 -19 6165 6067 39303 46 22 2 chrY 9412564 9418590 -15294489 + L1PA2 LINE L1 1 6151 -4 536 149 28 0 chrY 9418612 9418719 -15294360 - L1MB7 LINE L1 -107 6077 5968 502 153 0 12 chrY 9418846 9418931 -15294148 - AluJb SINE Alu -24 288 205 2955 6 0 0 chrY 9419075 9419391 -15293688 - AluYb8 SINE Alu -2 316 1 21 0 0 0 chrY 9419408 9419429 -15293650 + AT_rich Low_complexity Low_complexity 1 21 0 1735 204 89 34 chrY 9421304 9421744 -15291335 - MLT1C LTR MaLR -1 466 3 1960 123 0 41 chrY 9422556 9422849 -15290230 + AluY SINE Alu 1 281 -30 231 114 0 0 chrY 9422857 9422892 -15290187 + (CA)n Simple_repeat Simple_repeat 2 36 0 512 316 64 0 chrY 9423017 9423188 -15289891 + MER5A DNA MER1_type 1 182 -7 1291 210 7 46 chrY 9424627 9424932 -15288147 - AluJo SINE Alu -15 297 5 595 221 25 8 chrY 9425139 9425261 -15287818 - FLAM_A SINE Alu -8 134 11 273 275 0 50 chrY 9426208 9426368 -15286711 + (CAGAGA)n Simple_repeat Simple_repeat 4 155 0 640 225 72 34 chrY 9426368 9426577 -15286502 + MER20 DNA MER1_type 1 217 -2 1684 153 41 20 chrY 9426836 9427131 -15285948 - AluSc SINE Alu -8 301 1 232 254 32 0 chrY 9427413 9427476 -15285603 + GA-rich Low_complexity Low_complexity 2 66 0 676 164 62 39 chrY 9427506 9427634 -15285445 + FLAM_C SINE Alu 1 131 -2 1192 200 0 9 chrY 9427638 9427863 -15285216 + AluJo SINE Alu 87 309 -3 749 228 6 13 chrY 9427974 9428132 -15284947 - FRAM SINE Alu -19 157 1 2050 119 3 14 chrY 9429281 9429575 -15283504 + AluSx SINE Alu 11 301 -11 360 200 0 0 chrY 9429589 9429649 -15283430 + AluS SINE Alu 1 60 -248 894 191 0 13 chrY 9429653 9429810 -15283269 + AluSg/x SINE Alu 140 294 -16 1713 144 20 17 chrY 9430303 9430602 -15282477 - AluSc SINE Alu -9 300 1 1896 142 0 17 chrY 9430616 9430905 -15282174 - AluSx SINE Alu -28 284 1 1282 214 22 54 chrY 9431810 9432123 -15280956 + AluJo SINE Alu 3 305 -7 285 253 73 0 chrY 9432558 9432676 -15280403 - MIR SINE MIR -54 208 81 633 168 80 9 chrY 9434741 9434854 -15278225 - AluSq/x SINE Alu -191 122 2 1890 119 82 17 chrY 9434879 9435173 -15277906 - AluSq SINE Alu 0 313 1 333 0 0 0 chrY 9435194 9435231 -15277848 + (A)n Simple_repeat Simple_repeat 1 37 0 198 0 0 0 chrY 9435606 9435628 -15277451 + (A)n Simple_repeat Simple_repeat 1 22 0 2125 105 13 0 chrY 9437991 9438296 -15274783 - AluSc SINE Alu 0 309 1 705 234 120 0 chrY 9439083 9439241 -15273838 + MER45A DNA AcHobo 1 177 -1 1856 171 43 12 chrY 9439275 9439602 -15273477 + MER1B DNA MER1_type 1 337 0 1848 166 0 10 chrY 9440927 9441229 -15271850 - AluSx SINE Alu -13 299 1 209 157 78 0 chrY 9441231 9441282 -15271797 + (TTTG)n Simple_repeat Simple_repeat 1 55 0 237 369 15 23 chrY 9441314 9441444 -15271635 - MER5A DNA MER1_type -52 137 9 1525 177 8 4 chrY 9441474 9441740 -15271339 + AluJb SINE Alu 33 299 -13 312 70 0 0 chrY 9442461 9442504 -15270575 + (CA)n Simple_repeat Simple_repeat 2 44 0 42027 49 23 1 chrY 9442555 9448577 -15264502 + L1PA3 LINE L1 2 6155 0 25 0 0 0 chrY 9448577 9448602 -15264477 + AT_rich Low_complexity Low_complexity 1 25 0 1814 117 37 4 chrY 9450054 9450356 -15262723 + AluSg SINE Alu 1 311 0 860 139 60 13 chrY 9450842 9450993 -15262086 - AluSx SINE Alu -141 171 14 851 169 71 71 chrY 9451290 9451515 -15261564 + AluJo SINE Alu 87 311 -1 189 132 0 0 chrY 9452130 9452168 -15260911 + (TAGA)n Simple_repeat Simple_repeat 1 38 0 234 0 0 0 chrY 9452189 9452215 -15260864 + (TA)n Simple_repeat Simple_repeat 1 26 0 22 56 0 0 chrY 9452439 9452475 -15260604 + AT_rich Low_complexity Low_complexity 1 36 0 21 36 0 0 chrY 9452487 9452515 -15260564 + AT_rich Low_complexity Low_complexity 1 28 0 226 49 24 24 chrY 9452539 9452580 -15260499 + (TAGA)n Simple_repeat Simple_repeat 2 42 0 229 279 13 13 chrY 9452637 9452716 -15260363 - L1MDa LINE L1 -4603 1937 1859 330 277 71 52 chrY 9453787 9453942 -15259137 + MIR SINE MIR 41 198 -64 623 239 17 0 chrY 9454533 9454650 -15258429 - FLAM_C SINE Alu -24 119 1 281 351 47 32 chrY 9454659 9455064 -15258015 + L1ME3A LINE L1 5525 5935 -235 1882 168 3 10 chrY 9455111 9455421 -15257658 + AluSx SINE Alu 1 308 -4 1101 122 0 64 chrY 9456107 9456295 -15256784 - L1PB1 LINE L1 -2 6149 5974 3314 120 0 0 chrY 9456296 9456764 -15256315 + L1PB1 LINE L1 5499 5966 -185 239 318 36 18 chrY 9456837 9456947 -15256132 - L2 LINE L2 -1063 2251 2140 263 247 0 25 chrY 9457328 9457409 -15255670 + GA-rich Low_complexity Low_complexity 1 79 0 1666 173 37 0 chrY 9457471 9457771 -15255308 + AluSx SINE Alu 1 311 -1 1668 178 3 24 chrY 9457870 9458168 -15254911 - AluSx SINE Alu -16 296 5 2068 127 0 3 chrY 9458326 9458652 -15254427 + AluSg SINE Alu 1 325 0 401 281 55 0 chrY 9458982 9459110 -15253969 - MER5B DNA MER1_type -40 138 4 726 175 46 133 chrY 9459191 9459221 -15253858 - MER20 DNA MER1_type 0 219 188 1940 121 0 7 chrY 9459221 9459494 -15253585 - AluSg SINE Alu -5 305 35 726 175 46 133 chrY 9459494 9459703 -15253376 - MER20 DNA MER1_type -31 188 1 259 281 88 18 chrY 9460270 9460384 -15252695 - L2 LINE L2 0 3313 3192 868 259 95 11 chrY 9460937 9461199 -15251880 - HERVL40 LTR ERVL -2410 3120 2837 43776 53 2 1 chrY 9461203 9467352 -15245727 - L1PA4 LINE L1 0 6155 1 598 170 128 144 chrY 9468507 9468658 -15244421 - LTR23-int LTR ERV1 -3285 1651 1499 2524 84 0 0 chrY 9468658 9468969 -15244110 + AluY SINE Alu 1 311 0 598 170 128 144 chrY 9468969 9469193 -15243886 - LTR23-int LTR ERV1 -3437 1499 1282 390 203 65 72 chrY 9469187 9469325 -15243754 - LTR23-int LTR ERV1 -2340 2596 2460 * 455 275 77 10 chrY 9469297 9469504 -15243575 - LTR23-int LTR ERV1 -2547 2576 2356 1729 181 3 10 chrY 9469537 9469854 -15243225 - AluSx SINE Alu 0 312 1 430 304 74 47 chrY 9471402 9471698 -15241381 - HERVL40 LTR ERVL -3165 2178 1875 2329 112 0 0 chrY 9472451 9472754 -15240325 - AluSg SINE Alu -7 303 1 223 310 80 18 chrY 9474572 9474685 -15238394 - MIR SINE MIR -74 188 69 511 173 50 14 chrY 9475187 9475326 -15237753 - L1MB7 LINE L1 -1 6183 6040 1602 170 75 93 chrY 9475698 9476192 -15236887 + LTR1 LTR ERV1 12 496 -289 1125 231 88 0 chrY 9476204 9476533 -15236546 - L1MB3 LINE L1 -258 5925 5568 * 1831 200 23 14 chrY 9476524 9476954 -15236125 - L1MB7 LINE L1 -489 5802 5369 24 32 0 0 chrY 9477014 9477045 -15236034 + AT_rich Low_complexity Low_complexity 1 31 0 1451 205 3 27 chrY 9477045 9477246 -15235833 - AluJb SINE Alu -24 288 95 1586 154 87 42 chrY 9477246 9477604 -15235475 - THE1C LTR MaLR -1 374 1 1451 205 3 27 chrY 9477604 9477695 -15235384 - AluJb SINE Alu -217 95 3 2509 241 63 44 chrY 9477705 9478781 -15234298 - L1MB7 LINE L1 -1827 4319 3223 1941 151 27 7 chrY 9479525 9479824 -15233255 - AluSc SINE Alu -2 307 3 243 328 172 0 chrY 9481095 9481211 -15231868 + L2 LINE L2 3133 3268 -4 234 252 41 7 chrY 9481291 9481438 -15231641 + (TATAA)n Simple_repeat Simple_repeat 2 153 0 1990 137 3 10 chrY 9482044 9482358 -15230721 + AluSx SINE Alu 1 312 0 2075 122 7 0 chrY 9482478 9482766 -15230313 + AluSx SINE Alu 1 290 -22 221 234 0 0 chrY 9482770 9482817 -15230262 + L2 LINE L2 3267 3313 0 23 0 0 0 chrY 9482921 9482944 -15230135 + AT_rich Low_complexity Low_complexity 1 23 0 1581 149 48 0 chrY 9484415 9484683 -15228396 - AluSx SINE Alu -7 305 25 2396 15 0 0 chrY 9485784 9486077 -15227002 - AluYa5 SINE Alu 0 338 46 382 248 67 0 chrY 9488328 9488433 -15224646 + MIR SINE MIR 79 190 -72 188 167 0 0 chrY 9488725 9488755 -15224324 - MIR SINE MIR -68 140 111 207 216 20 0 chrY 9489385 9489436 -15223643 + GA-rich Low_complexity Low_complexity 3 54 0 1997 141 3 3 chrY 9489640 9489937 -15223142 + AluSx SINE Alu 8 304 -8 656 218 0 3 chrY 9489948 9490172 -15222907 + AluJb SINE Alu 1 290 -22 357 24 0 0 chrY 9490173 9490215 -15222864 + (CA)n Simple_repeat Simple_repeat 2 43 0 188 284 45 45 chrY 9490392 9490480 -15222599 - MIR SINE MIR -92 170 83 230 369 0 54 chrY 9490744 9490855 -15222224 - L3 LINE CR1 -13 1564 1460 403 312 111 21 chrY 9491032 9491266 -15221813 - MIR SINE MIR 0 262 8 397 298 18 0 chrY 9491869 9491983 -15221096 + MER45A DNA AcHobo 3 118 -60 38724 49 29 2 chrY 9491983 9497959 -15215120 - L1PA3 LINE L1 -9 6146 4 310 164 123 0 chrY 9497959 9498032 -15215047 + MER45A DNA AcHobo 96 177 -1 1982 228 42 15 chrY 9499148 9499353 -15213726 + L1MB5 LINE L1 5623 5821 -353 1768 129 17 46 chrY 9499353 9499655 -15213424 + AluSx SINE Alu 1 293 -19 1982 228 42 15 chrY 9499655 9499979 -15213100 + L1MB5 LINE L1 5821 6166 -8 28 0 0 0 chrY 9499998 9500026 -15213053 + AT_rich Low_complexity Low_complexity 1 28 0 676 249 55 121 chrY 9500565 9501243 -15211836 + MER21B LTR ERV1 24 656 -207 1907 138 19 58 chrY 9501326 9501703 -15211376 + MER4B LTR ERV1 1 362 -248 1038 148 0 0 chrY 9501793 9501885 -15211194 + (GAAA)n Simple_repeat Simple_repeat 1 268 0 1038 148 0 0 chrY 9501885 9502061 -15211018 + (GAAA)n Simple_repeat Simple_repeat 4 179 0 1386 183 8 0 chrY 9502114 9502370 -15210709 + MER4A LTR ERV1 417 664 0 1260 201 99 19 chrY 9502372 9502695 -15210384 + MER4A-int LTR ERV1 1 349 -6249 207 100 0 0 chrY 9502700 9502730 -15210349 + (TTTTA)n Simple_repeat Simple_repeat 1 30 0 20502 155 94 30 chrY 9502730 9506929 -15206150 - L1PA8 LINE L1 -24 6148 1467 2748 22 0 0 chrY 9506929 9507240 -15205839 - AluYa5 SINE Alu 0 311 1 20502 155 94 30 chrY 9507240 9508806 -15204273 - L1PA8 LINE L1 -4705 1467 3 490 167 22 19 chrY 9508810 9508987 -15204092 + MER4A-int LTR ERV1 344 563 -6035 335 169 0 0 chrY 9509054 9509113 -15203966 + MER4A-int LTR ERV1 751 809 -5789 195 42 0 0 chrY 9509123 9509147 -15203932 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1961 159 33 3 chrY 9509180 9509539 -15203540 - L1PB1 LINE L1 0 6867 6498 451 171 19 0 chrY 9509543 9509648 -15203431 + (TA)n Simple_repeat Simple_repeat 1 107 0 11429 204 25 25 chrY 9509661 9513340 -15199739 - L1PB1 LINE L1 -360 6507 2833 3159 126 42 70 chrY 9513346 9513959 -15199120 + LTR4 LTR ERV1 1 596 0 6348 166 40 10 chrY 9514001 9515124 -15197955 - L1PB1 LINE L1 -4104 2759 1588 3322 133 6 8 chrY 9515124 9515636 -15197443 + MER9 LTR ERVK 1 511 0 6348 166 40 10 chrY 9515636 9515864 -15197215 - L1PB1 LINE L1 -5275 1588 1368 414 119 0 0 chrY 9515907 9515974 -15197105 - L1PB1 LINE L1 -5704 1159 1093 3261 256 57 6 chrY 9515976 9516968 -15196111 - L1PB1 LINE L1 -5816 1047 6 887 266 84 32 chrY 9517158 9517466 -15195613 + MER4A-int LTR ERV1 1845 2168 -4163 8062 162 65 66 chrY 9517518 9518825 -15194254 + MER4B-int LTR ERV1 198 1576 -5182 445 203 0 0 chrY 9518825 9518919 -15194160 - AluSg/x SINE Alu 0 301 208 8062 162 65 66 chrY 9518919 9519722 -15193357 + MER4B-int LTR ERV1 1576 2379 -4379 195 129 0 0 chrY 9519731 9519762 -15193317 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 225 171 0 0 chrY 9519787 9519822 -15193257 - AluSq/x SINE Alu -62 237 203 487 261 0 0 chrY 9519825 9519944 -15193135 - AluSq/x SINE Alu -193 119 1 323 116 0 0 chrY 9519960 9520029 -15193050 + MER4B-int LTR ERV1 2389 2457 -4301 1001 267 88 42 chrY 9520046 9520616 -15192463 - LTR9 LTR ERV1 -16 596 1 * 10087 176 46 31 chrY 9520616 9521252 -15191827 + MER4B-int LTR ERV1 2454 3079 -3679 588 99 0 12 chrY 9521252 9521333 -15191746 - MADE1 DNA Mariner 0 80 1 10087 176 46 31 chrY 9521333 9522397 -15190682 + MER4B-int LTR ERV1 3079 4194 -2564 1552 174 10 35 chrY 9522397 9522685 -15190394 + AluY SINE Alu 6 286 -25 10087 176 46 31 chrY 9522685 9523058 -15190021 + MER4B-int LTR ERV1 4194 4560 -2198 1353 138 200 4 chrY 9523059 9523299 -15189780 + LTR12 LTR ERV1 1 287 -427 322 244 12 0 chrY 9523301 9523387 -15189692 + LTR30 LTR ERV1 556 642 -80 612 173 42 18 chrY 9523387 9523513 -15189566 + LTR12 LTR ERV1 300 584 -130 * 32450 129 25 11 chrY 9523505 9531660 -15181419 + HERV9 LTR ERV1 54 8398 -1 244 186 0 0 chrY 9531661 9531704 -15181375 + LTR30 LTR ERV1 1 43 -679 2223 86 4 0 chrY 9531711 9532014 -15181065 - AluY SINE Alu 0 304 1 1191 142 9 66 chrY 9532014 9532240 -15180839 + LTR12 LTR ERV1 46 258 -456 332 278 43 0 chrY 9532240 9532355 -15180724 + LTR30 LTR ERV1 524 643 -79 572 156 62 0 chrY 9532355 9532451 -15180628 + LTR12 LTR ERV1 480 581 -133 4369 116 39 78 chrY 9532452 9533294 -15179785 + MER4B-int LTR ERV1 4559 5367 -1391 2497 188 21 13 chrY 9533292 9533770 -15179309 - MER41A-int LTR ERV1 -5464 482 1 * 3459 137 13 16 chrY 9533778 9534326 -15178753 - MER41A LTR ERV1 -8 546 1 535 264 10 15 chrY 9534326 9534523 -15178556 - L1 LINE L1 -3004 3142 2947 1376 209 76 21 chrY 9534648 9534978 -15178101 + LTR32 LTR ERVL 113 460 -11 3442 280 53 32 chrY 9534990 9536256 -15176823 + HERVL32 LTR ERVL 1 1293 -2125 1226 174 0 14 chrY 9536674 9536887 -15176192 + AluSg SINE Alu 1 210 -100 27550 128 14 32 chrY 9536887 9542830 -15170249 + L1PA7 LINE L1 601 6464 -5 1825 217 10 5 chrY 9544369 9544761 -15168318 - L1P3 LINE L1 -3990 3594 3201 1566 149 75 0 chrY 9544797 9545077 -15168002 + AluSq SINE Alu 23 313 0 397 291 6 113 chrY 9545081 9545284 -15167795 - L1P3 LINE L1 -4976 2022 610 583 261 13 26 chrY 9545310 9545463 -15167616 - L1P3 LINE L1 -7351 230 80 5159 230 116 19 chrY 9545466 9546506 -15166573 - L1M1 LINE L1 -5162 2403 1466 1750 179 0 0 chrY 9546506 9546809 -15166270 - AluSg SINE Alu 0 303 1 5159 230 116 19 chrY 9546809 9547316 -15165763 - L1M1 LINE L1 -6099 1466 1 388 149 103 0 chrY 9547308 9547395 -15165684 + L1 LINE L1 4847 4942 -1204 * 1643 190 10 26 chrY 9547694 9547999 -15165080 + AluJb SINE Alu 3 302 -10 816 65 0 0 chrY 9548462 9548569 -15164510 + (GAA)n Simple_repeat Simple_repeat 3 109 0 1756 102 3 89 chrY 9550556 9550849 -15162230 + AluY SINE Alu 26 293 -18 738 106 3 0 chrY 9551674 9551781 -15161298 - LTR12 LTR ERV1 -4 710 73 5049 104 121 8 chrY 9551781 9552523 -15160556 - LTR12 LTR ERV1 0 826 1 34020 105 8 16 chrY 9552523 9557410 -15155669 - HERV9 LTR ERV1 0 8399 3553 516 132 0 0 chrY 9557417 9557493 -15155586 - HERV9 LTR ERV1 -6740 1659 1584 * 21869 116 41 35 chrY 9557470 9560935 -15152144 - HERV9 LTR ERV1 -4833 3566 80 4864 131 136 0 chrY 9560935 9561934 -15151145 - pTR5 LTR ERV1 0 2606 1520 2469 164 69 70 chrY 9561945 9562343 -15150736 - MER4B LTR ERV1 -9 770 198 1329 244 3 13 chrY 9562343 9562651 -15150428 - AluJb SINE Alu -7 305 1 2469 164 69 70 chrY 9562651 9562849 -15150230 - MER4B LTR ERV1 -581 198 1 1013 177 0 6 chrY 9562849 9563013 -15150066 - MER4B-int LTR ERV1 0 6758 6596 9043 160 24 3 chrY 9563018 9564528 -15148551 - MER4B-int LTR ERV1 -558 6200 4659 2805 161 32 32 chrY 9564532 9565060 -15148019 - MER4D LTR ERV1 -250 622 95 5954 64 4 1 chrY 9565217 9565935 -15147144 + L1PA5 LINE L1 5435 6154 0 702 216 60 95 chrY 9565935 9566305 -15146774 + LTR23-int LTR ERV1 390 746 -4377 1691 168 100 29 chrY 9566526 9566866 -15146213 + THE1B LTR MaLR 1 364 0 9053 129 20 111 chrY 9566866 9567270 -15145809 + THE1B-int LTR MaLR 1 440 -1140 1129 144 40 0 chrY 9567270 9567443 -15145636 - AluSg/x SINE Alu -2 308 129 183 42 0 0 chrY 9567443 9567467 -15145612 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1986 141 0 0 chrY 9567467 9567750 -15145329 - AluY SINE Alu -28 283 1 9053 129 20 111 chrY 9567750 9568908 -15144171 + THE1B-int LTR MaLR 437 1580 0 2160 152 48 25 chrY 9568908 9569264 -15143815 + THE1B LTR MaLR 1 364 0 7363 58 3 0 chrY 9569604 9570666 -15142413 - L1PA4 LINE L1 -1 6154 5094 3603 128 0 0 chrY 9570682 9571204 -15141875 + HERVK14 LTR ERVK 1064 1585 -4360 19133 108 5 12 chrY 9571205 9574255 -15138824 + HERVK14 LTR ERVK 2107 5145 -800 2290 310 55 39 chrY 9574298 9576033 -15137046 + HERVK14 LTR ERVK 5616 7377 -40 2838 125 56 113 chrY 9576042 9576682 -15136397 + LTR14B LTR ERVK 5 608 0 761 166 22 17 chrY 9576684 9576865 -15136214 - L1PBa LINE L1 -3904 2945 2764 2608 163 11 17 chrY 9576879 9577340 -15135739 - LTR22A LTR ERVK 0 458 1 1047 181 0 0 chrY 9577340 9577522 -15135557 - HERVK22 LTR ERVK 0 6837 6656 * 18192 143 25 2 chrY 9577515 9580535 -15132544 - HERVK22 LTR ERVK -1502 5335 2248 5265 179 22 11 chrY 9580527 9581498 -15131581 - HERVK22 LTR ERVK -5856 981 1 * 2577 170 22 9 chrY 9581498 9581950 -15131129 - LTR22A LTR ERVK 0 458 1 2299 200 11 0 chrY 9581950 9582405 -15130674 + L1P3 LINE L1 472 931 -5530 1477 221 47 27 chrY 9582415 9583007 -15130072 - L1PBa LINE L1 -4582 2267 1664 4862 111 5 40 chrY 9583015 9583791 -15129288 - L1PA8 LINE L1 -8 6164 5416 1862 133 44 0 chrY 9583791 9584130 -15128949 + L1PA8 LINE L1 5050 5403 -743 1284 344 18 19 chrY 9584132 9584749 -15128330 - L1PBa LINE L1 -5181 1668 1053 1373 245 68 84 chrY 9584957 9585516 -15127563 + MLT2B3 LTR ERVL 5 554 0 4094 216 19 3 chrY 9585516 9586430 -15126649 + HERVL-B3 LTR ERVL 1 928 -4726 1125 211 65 4 chrY 9586422 9586682 -15126397 + HERVL-B3 LTR ERVL 1227 1502 -4152 * 3074 90 2 2 chrY 9586682 9587106 -15125973 + MER11D LTR ERVK 1 424 -473 932 205 9 47 chrY 9587154 9587369 -15125710 - LTR25 LTR ERV1 -344 450 244 383 173 0 13 chrY 9587392 9587467 -15125612 - LTR25 LTR ERV1 -501 293 220 2032 170 4 58 chrY 9587573 9588025 -15125054 + L1PA13 LINE L1 5539 5966 -197 247 250 0 0 chrY 9588022 9588102 -15124977 - L1 LINE L1 -1764 4382 4303 * 1970 186 35 2 chrY 9588105 9588509 -15124570 - MSTA LTR MaLR -4 424 8 881 245 95 11 chrY 9588511 9588973 -15124106 + LTR2 LTR ERV1 3 488 -2 5734 215 113 30 chrY 9588986 9589084 -15123995 - MSTA-int LTR MaLR 0 1651 1563 1483 223 0 7 chrY 9589084 9589367 -15123712 - AluJb SINE Alu -31 281 1 5734 215 113 30 chrY 9589367 9590792 -15122287 - MSTA-int LTR MaLR -88 1563 1 584 214 55 62 chrY 9590815 9590999 -15122080 + MLT2A2 LTR ERVL 293 453 0 10800 172 32 30 chrY 9591000 9593214 -15119865 + HERVL-A2 LTR ERVL 2 2220 -3434 5125 178 5 6 chrY 9593226 9594164 -15118915 + HERVL-B3 LTR ERVL 4718 5654 0 1553 229 38 83 chrY 9594164 9594744 -15118335 + MLT2B3 LTR ERVL 1 554 0 6078 208 41 32 chrY 9594745 9596199 -15116880 - MER66-int LTR ERV1 -3958 2718 1253 417 326 27 32 chrY 9596953 9597140 -15115939 - MER66-int LTR ERV1 -6091 585 400 270 238 12 36 chrY 9597145 9597229 -15115850 - MER66-int LTR ERV1 -6410 266 185 348 242 81 12 chrY 9597451 9597606 -15115473 - MER41B LTR ERV1 -242 350 142 349 227 21 21 chrY 9597740 9597837 -15115242 - L1ME3A LINE L1 -9 6161 6065 292 161 54 0 chrY 9597852 9597908 -15115171 - L1ME3A LINE L1 -157 6013 5955 870 242 90 20 chrY 9597967 9598391 -15114688 + MLT2B1 LTR ERVL 1 512 -8 398 295 57 19 chrY 9598396 9598606 -15114473 - L1ME3A LINE L1 -263 5907 5690 1613 159 30 15 chrY 9598634 9598898 -15114181 - AluSx SINE Alu -24 288 21 21 57 0 0 chrY 9598972 9599007 -15114072 + AT_rich Low_complexity Low_complexity 1 35 0 711 226 12 24 chrY 9599441 9599609 -15113470 + AluSg/x SINE Alu 139 304 -8 9717 197 29 22 chrY 9599899 9602371 -15110708 - L1PA13 LINE L1 -1 6162 3637 441 0 0 0 chrY 9602371 9602420 -15110659 + (TG)n Simple_repeat Simple_repeat 2 50 0 9717 197 29 22 chrY 9602420 9603193 -15109886 - L1PA13 LINE L1 -2526 3637 2871 1411 241 10 10 chrY 9603195 9603593 -15109486 - L1PA13 LINE L1 -3584 2562 2165 329 138 0 0 chrY 9603940 9603998 -15109081 + LTR69 LTR ERVL 193 250 -338 2086 98 4 0 chrY 9604051 9604352 -15108727 - AluY SINE Alu 0 318 17 2114 191 18 18 chrY 9604382 9604831 -15108248 - L1PA16 LINE L1 -9 6157 5709 54 84 0 0 chrY 9605296 9605427 -15107652 + AT_rich Low_complexity Low_complexity 1 131 0 1624 237 8 9 chrY 9605815 9606339 -15106740 + LTR69 LTR ERVL 4 588 0 585 250 69 0 chrY 9606346 9606506 -15106573 + MER77 LTR ERV1 427 597 -8 4722 235 60 12 chrY 9606837 9608043 -15105036 - ERVL-D LTR ERVL -1178 4586 3322 2939 243 82 32 chrY 9608039 9609052 -15104027 + ERVL LTR ERVL 2119 3182 -2582 * 1754 354 57 3 chrY 9609050 9609932 -15103147 - ERVL-D LTR ERVL -4467 1297 285 * 605 249 61 0 chrY 9610294 9610459 -15102620 - MLT2D LTR ERVL -60 354 180 21 36 0 0 chrY 9610475 9610503 -15102576 + AT_rich Low_complexity Low_complexity 1 28 0 2578 156 38 22 chrY 9610503 9611002 -15102077 - L1PB3 LINE L1 -3 6151 5645 1674 160 102 140 chrY 9611007 9611557 -15101522 - MER1A DNA MER1_type 0 529 1 1457 132 40 52 chrY 9611557 9611883 -15101196 - L1PB3 LINE L1 -514 5640 5319 2469 134 35 5 chrY 9611901 9612305 -15100774 - L1PA10 LINE L1 -11 6157 5742 459 129 0 12 chrY 9612314 9612399 -15100680 - L1PA10 LINE L1 -335 5833 5750 192 40 0 0 chrY 9612421 9612446 -15100633 + (TTTAA)n Simple_repeat Simple_repeat 3 27 0 5136 137 9 17 chrY 9612449 9612922 -15100157 - L1PA8 LINE L1 -31 6141 5666 450 32 0 32 chrY 9612922 9612984 -15100095 - L1PA4 LINE L1 -8 6147 6088 5136 137 9 17 chrY 9612984 9613728 -15099351 - L1PA8 LINE L1 -506 5666 4928 1103 241 18 3 chrY 9613715 9614043 -15099036 - L1PB3 LINE L1 -809 5337 5005 * 5211 133 50 7 chrY 9614100 9615116 -15097963 - L1PA10 LINE L1 -4 6164 5122 4180 79 8 36 chrY 9615121 9615738 -15097341 - L1PA7 LINE L1 -13 6141 5542 8314 183 33 26 chrY 9615743 9615983 -15097096 - L1PA10 LINE L1 -2208 3938 3701 390 57 0 0 chrY 9615983 9616036 -15097043 + (TTG)n Simple_repeat Simple_repeat 3 55 0 8314 183 33 26 chrY 9616036 9616475 -15096604 - L1PA10 LINE L1 -2445 3701 3267 201 39 0 0 chrY 9616475 9616501 -15096578 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 8314 183 33 26 chrY 9616501 9617525 -15095554 - L1PA10 LINE L1 -2879 3267 2216 2847 16 0 0 chrY 9617525 9617837 -15095242 - AluYb8 SINE Alu -6 312 1 8314 183 33 26 chrY 9617837 9618086 -15094993 - L1PA10 LINE L1 -3930 2216 1970 3144 105 58 14 chrY 9618099 9618585 -15094494 - L1PA10 LINE L1 -5638 508 2 886 200 54 0 chrY 9618588 9618904 -15094175 - L1P4 LINE L1 -682 5483 5156 682 194 59 6 chrY 9618905 9619075 -15094004 + L1PA13 LINE L1 5967 6145 -18 3459 221 43 10 chrY 9619076 9620807 -15092272 + L1PA16 LINE L1 4376 6166 0 2156 255 37 4 chrY 9620900 9621610 -15091469 + L1 LINE L1 2224 2956 -3190 3583 173 29 51 chrY 9621610 9622379 -15090700 - LTR25 LTR ERV1 -23 771 20 5265 176 13 37 chrY 9622380 9623656 -15089423 - LTR25-int LTR ERV1 -50 6946 5641 2106 138 0 3 chrY 9623656 9623953 -15089126 - AluSg SINE Alu -14 296 1 5265 176 13 37 chrY 9623953 9624005 -15089074 - LTR25-int LTR ERV1 -1355 5641 2934 40158 38 23 1 chrY 9624005 9630025 -15083054 + L1PA2 LINE L1 4 6155 0 19821 189 41 54 chrY 9630029 9631195 -15081884 - LTR25-int LTR ERV1 -1281 5715 4535 2347 92 0 13 chrY 9631195 9631500 -15081579 - AluY SINE Alu -10 301 1 19821 189 41 54 chrY 9631500 9635234 -15077845 - LTR25-int LTR ERV1 -2461 4535 922 1898 151 0 7 chrY 9635234 9635554 -15077525 + AluY SINE Alu 3 311 0 19821 189 41 54 chrY 9635554 9636201 -15076878 - LTR25-int LTR ERV1 -6074 922 268 595 230 24 85 chrY 9636222 9636470 -15076609 - LTR12 LTR ERV1 -251 463 231 315 154 77 0 chrY 9636800 9636865 -15076214 - LTR25-int LTR ERV1 -6914 82 13 3578 184 35 57 chrY 9636865 9637061 -15076018 - LTR25 LTR ERV1 0 794 595 1962 130 0 14 chrY 9637061 9637375 -15075704 - AluSc SINE Alu 0 310 1 3578 184 35 57 chrY 9637375 9637989 -15075090 - LTR25 LTR ERV1 -199 595 1 3951 174 38 8 chrY 9637989 9639497 -15073582 + L1M1 LINE L1 2989 5797 -507 806 262 93 54 chrY 9639499 9639908 -15073171 - MLT1D LTR MaLR 0 505 81 1949 163 0 0 chrY 9640011 9640311 -15072768 - AluSg SINE Alu -10 300 1 1987 159 0 0 chrY 9640685 9640974 -15072105 + AluSc SINE Alu 1 289 -20 634 178 15 44 chrY 9641234 9641369 -15071710 - FLAM_C SINE Alu -1 132 2 2104 255 55 49 chrY 9641777 9642806 -15070273 + L1M4 LINE L1 3914 4949 -1197 256 59 0 0 chrY 9642883 9642917 -15070162 + (TG)n Simple_repeat Simple_repeat 1 34 0 302 153 17 0 chrY 9642917 9642976 -15070103 + (TA)n Simple_repeat Simple_repeat 1 60 0 362 255 0 21 chrY 9642976 9643070 -15070009 + L1MC4 LINE L1 6612 6703 -1339 213 39 0 0 chrY 9643109 9643135 -15069944 + (TA)n Simple_repeat Simple_repeat 1 26 0 1867 168 3 0 chrY 9643136 9643422 -15069657 - AluSx SINE Alu -25 287 1 11220 233 19 33 chrY 9643462 9644456 -15068623 - L1PA13 LINE L1 -923 5874 4867 3722 151 23 97 chrY 9644456 9645313 -15067766 + LTR25 LTR ERV1 1 794 0 11220 233 19 33 chrY 9645313 9647318 -15065761 - L1PA13 LINE L1 -1930 4867 2929 3540 22 5 0 chrY 9647318 9647756 -15065323 + L1PA3 LINE L1 5723 6162 0 11220 233 19 33 chrY 9647756 9648196 -15064883 - L1PA13 LINE L1 -3868 2929 2484 1933 122 0 0 chrY 9648201 9648456 -15064623 + AluSg SINE Alu 1 255 -55 5225 206 23 16 chrY 9648467 9649569 -15063510 - L1PA13 LINE L1 -4594 2193 1085 2815 255 174 7 chrY 9649571 9650419 -15062660 - L1PA13 LINE L1 -5740 1047 58 1525 131 25 29 chrY 9650441 9650716 -15062363 - THE1C LTR MaLR -21 354 81 1741 258 73 34 chrY 9650806 9651014 -15062065 - L1PA15-16 LINE L1 -3147 4437 4239 2443 128 8 13 chrY 9651014 9651388 -15061691 + THE1C LTR MaLR 4 375 0 1741 258 73 34 chrY 9651388 9652015 -15061064 - L1PA15-16 LINE L1 -3345 4239 3569 26985 130 17 57 chrY 9652031 9658427 -15054652 + L1PA7 LINE L1 12 6141 -13 31 26 0 0 chrY 9658440 9658478 -15054601 + AT_rich Low_complexity Low_complexity 1 38 0 307 125 156 0 chrY 9658492 9658556 -15054523 - THE1-int LTR MaLR -1018 562 489 2203 202 82 12 chrY 9658591 9659185 -15053894 - L1PA15-16 LINE L1 -3989 3595 2960 39891 43 22 3 chrY 9659243 9665279 -15047800 - L1PA3 LINE L1 -2 6153 4 2337 203 51 19 chrY 9665279 9665980 -15047099 - L1PA15-16 LINE L1 -4600 2984 2131 225 350 10 10 chrY 9666620 9666723 -15046356 - L1M2 LINE L1 -5783 1066 964 761 311 60 8 chrY 9667467 9667837 -15045242 - L1PA15-16 LINE L1 -7191 390 2 227 138 73 55 chrY 9667844 9667953 -15045126 - L1 LINE L1 -2876 4689 4579 1690 267 42 2 chrY 9667973 9668572 -15044507 - L1 LINE L1 -3264 4301 3679 1184 206 21 18 chrY 9668574 9668860 -15044219 + MER65A LTR ERV1 1 287 -158 33975 82 21 5 chrY 9668868 9674890 -15038189 + L1PA5 LINE L1 11 6173 0 300 176 71 24 chrY 9674894 9674979 -15038100 + MER65A LTR ERV1 280 368 -77 941 269 161 20 chrY 9675023 9675708 -15037371 - L1 LINE L1 -3891 3674 2894 * 2268 244 63 120 chrY 9675704 9677173 -15035906 - L1 LINE L1 -5645 1844 460 1184 270 65 0 chrY 9677192 9677637 -15035442 - L1M4 LINE L1 -1776 4370 3897 24 41 0 20 chrY 9677688 9677709 -15035370 + AT_rich Low_complexity Low_complexity 1 21 -27 1943 144 3 3 chrY 9677709 9678001 -15035078 + AluY SINE Alu 1 292 -19 24 41 0 20 chrY 9678001 9678028 -15035051 + AT_rich Low_complexity Low_complexity 21 48 0 2145 179 114 65 chrY 9678065 9678390 -15034689 - L1MA8 LINE L1 -4 6287 5979 1816 136 3 65 chrY 9678390 9678564 -15034515 - AluSx SINE Alu -21 291 143 2104 105 3 33 chrY 9678564 9678869 -15034210 - AluSg SINE Alu -14 296 1 1816 136 3 65 chrY 9678869 9679002 -15034077 - AluSx SINE Alu -169 143 3 2145 179 114 65 chrY 9679002 9679336 -15033743 - L1MA8 LINE L1 -312 5979 5596 11206 215 40 27 chrY 9679900 9684263 -15028816 - L1PB2 LINE L1 -2 6206 1996 2191 108 0 3 chrY 9684263 9684558 -15028521 + AluY SINE Alu 3 296 -15 11206 215 40 27 chrY 9684558 9686581 -15026498 - L1PB2 LINE L1 -4212 1996 1 355 302 54 24 chrY 9786650 9786855 -14926224 - HAL1b LINE L1 -490 858 648 40372 54 2 2 chrY 9786889 9793046 -14920033 - L1PA3 LINE L1 0 6155 1 999 95 0 0 chrY 9793050 9793187 -14919892 - AluY SINE Alu -16 295 159 346 329 34 30 chrY 9793449 9793683 -14919396 - HAL1b LINE L1 -854 494 260 1592 158 4 0 chrY 9793724 9793964 -14919115 - AluSx SINE Alu -14 298 58 21 0 0 0 chrY 9796191 9796212 -14916867 + AT_rich Low_complexity Low_complexity 1 21 0 2151 121 16 22 chrY 9796524 9796903 -14916176 - AluSx SINE Alu 0 377 1 1579 203 16 3 chrY 9798763 9799069 -14914010 + AluJo SINE Alu 3 312 0 2277 109 0 0 chrY 9800310 9800612 -14912467 - AluY SINE Alu -9 302 1 1589 150 3 92 chrY 9800619 9800794 -14912285 - AluSx SINE Alu -15 297 163 297 0 0 0 chrY 9800794 9800827 -14912252 + (TG)n Simple_repeat Simple_repeat 2 34 0 1589 150 3 92 chrY 9800827 9800977 -14912102 - AluSx SINE Alu -149 163 1 3190 155 11 19 chrY 9801104 9801634 -14911445 - MER1A DNA MER1_type 0 527 2 1294 204 74 11 chrY 9803314 9803583 -14909496 + AluJo SINE Alu 1 286 -26 2083 142 0 3 chrY 9803910 9804206 -14908873 - AluSg SINE Alu -11 299 5 36 40 0 0 chrY 9804474 9804524 -14908555 + AT_rich Low_complexity Low_complexity 1 50 0 216 158 0 0 chrY 9804673 9804711 -14908368 + (TATG)n Simple_repeat Simple_repeat 3 40 0 2012 159 0 0 chrY 9804723 9805012 -14908067 - AluSq SINE Alu -24 289 1 208 143 0 0 chrY 9809806 9809841 -14903238 + (A)n Simple_repeat Simple_repeat 1 35 0 303 104 0 0 chrY 9810888 9810936 -14902143 + (CA)n Simple_repeat Simple_repeat 1 48 0 186 43 0 0 chrY 9813559 9813582 -14899497 + (TTTTC)n Simple_repeat Simple_repeat 3 25 0 502 156 16 66 chrY 9814498 9814548 -14898531 - L1MB7 LINE L1 -10 6174 6123 8943 44 3 0 chrY 9814548 9815616 -14897463 + MER11C LTR ERVK 1 1071 0 502 156 16 66 chrY 9815616 9815687 -14897392 - L1MB7 LINE L1 -61 6123 6059 1914 102 0 0 chrY 9815689 9815954 -14897125 - AluY SINE Alu -5 306 42 220 302 63 38 chrY 9816244 9816403 -14896676 + L2 LINE L2 2366 2528 -786 547 344 59 60 chrY 9816601 9817287 -14895792 + L2 LINE L2 2637 3311 -2 276 281 50 22 chrY 9817386 9817525 -14895554 + L1MB7 LINE L1 6033 6175 -9 863 229 14 62 chrY 9819053 9819345 -14893734 - LTR4 LTR ERV1 -2 594 317 406 282 18 47 chrY 9819547 9819717 -14893362 - LTR4 LTR ERV1 -396 200 36 216 0 0 0 chrY 9820891 9820915 -14892164 + (T)n Simple_repeat Simple_repeat 1 24 0 208 224 17 35 chrY 9821981 9822039 -14891040 + MIR SINE MIR 113 169 -93 1024 229 0 0 chrY 9822133 9822343 -14890736 + MER58A DNA MER1_type 1 210 -14 222 305 24 24 chrY 9822533 9822615 -14890464 + MIR SINE MIR 60 141 -67 327 203 0 0 chrY 9822716 9822785 -14890294 + (TATATG)n Simple_repeat Simple_repeat 2 70 0 1609 209 13 13 chrY 9823100 9823411 -14889668 - AluJo SINE Alu -1 311 1 524 233 7 67 chrY 9824175 9824325 -14888754 - L2 LINE L2 -1 3312 3172 1991 154 64 29 chrY 9824346 9824860 -14888219 - MLT2A2 LTR ERVL 0 554 1 1642 265 133 42 chrY 9824957 9825946 -14887133 - L2 LINE L2 -281 3032 1959 3250 138 11 18 chrY 9826257 9826808 -14886271 + L1PA10 LINE L1 5606 6152 -16 1601 204 3 7 chrY 9827798 9828097 -14884982 - AluJb SINE Alu -10 302 5 43257 104 36 30 chrY 9828640 9836886 -14876193 + HERV9 LTR ERV1 17 6550 0 7376 119 103 15 chrY 9836886 9838959 -14874120 + HERV9 LTR ERV1 506 8399 0 367 296 52 9 chrY 9839174 9839289 -14873790 - L2 LINE L2 -5 3308 3189 2282 123 0 0 chrY 9839713 9840023 -14873056 - AluSq SINE Alu -3 310 1 300 393 15 15 chrY 9840449 9840584 -14872495 - L2 LINE L2 0 3272 3138 1226 214 81 27 chrY 9840745 9841115 -14871964 + MLT1D LTR MaLR 116 505 0 202 243 54 63 chrY 9841117 9841228 -14871851 - MIR SINE MIR -68 194 85 190 253 41 153 chrY 9841671 9841810 -14871269 + L2 LINE L2 2855 3008 -305 610 247 79 0 chrY 9841810 9842000 -14871079 - MER3 DNA MER1_type -4 205 1 190 253 41 153 chrY 9842000 9842148 -14870931 + L2 LINE L2 3008 3079 -234 2337 71 6 46 chrY 9842148 9842474 -14870605 - AluSq SINE Alu 0 313 1 190 253 41 153 chrY 9842474 9842624 -14870455 + L2 LINE L2 3079 3244 -69 315 0 0 0 chrY 9845806 9845841 -14867238 + (CA)n Simple_repeat Simple_repeat 2 36 0 605 234 9 0 chrY 9845849 9845960 -14867119 - FLAM_A SINE Alu -30 112 1 840 173 0 0 chrY 9847251 9847384 -14865695 + FLAM_C SINE Alu 1 133 0 187 256 44 7 chrY 9849500 9849637 -14863442 + CT-rich Low_complexity Low_complexity 3 144 0 40263 53 3 4 chrY 9850239 9856384 -14856695 + L1PA3 LINE L1 13 6152 -3 297 219 0 0 chrY 9858046 9858119 -14854960 + (CATATA)n Simple_repeat Simple_repeat 4 76 0 39 22 0 0 chrY 9859049 9859095 -14853984 + AT_rich Low_complexity Low_complexity 1 46 0 28 29 0 0 chrY 9859206 9859241 -14853838 + AT_rich Low_complexity Low_complexity 1 35 0 1020 184 38 19 chrY 9859829 9860041 -14853038 - MER20 DNA MER1_type -3 216 1 299 80 27 27 chrY 9860442 9860517 -14852562 + (TATAA)n Simple_repeat Simple_repeat 5 79 0 741 178 7 30 chrY 9861029 9861164 -14851915 + FLAM_A SINE Alu 1 132 -1 1386 177 17 27 chrY 9861662 9861962 -14851117 - L1PB4 LINE L1 -76 6080 5784 1284 146 46 13 chrY 9861961 9862200 -14850879 + L1PB4 LINE L1 5519 5765 -391 * 2115 98 103 59 chrY 9862211 9862620 -14850459 - LTR49 LTR ERV1 -168 427 1 1567 175 52 14 chrY 9863152 9863443 -14849636 + AluJo SINE Alu 1 302 -10 194 277 198 10 chrY 9863481 9863582 -14849497 + MIR SINE MIR 101 220 -42 234 0 0 0 chrY 9863586 9863612 -14849467 + (TG)n Simple_repeat Simple_repeat 2 27 0 5609 128 10 2 chrY 9863629 9864695 -14848384 + L1PA13 LINE L1 5098 6163 0 1003 144 27 78 chrY 9865348 9865605 -14847474 - L1MD2 LINE L1 0 6359 6116 305 345 71 18 chrY 9866148 9866316 -14846763 + MER5B DNA MER1_type 1 177 -1 443 307 74 62 chrY 9867017 9867166 -14845913 - MIR SINE MIR -4 258 112 1901 124 22 0 chrY 9867166 9867440 -14845639 + AluSx SINE Alu 1 280 -32 252 0 0 0 chrY 9867440 9867468 -14845611 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 443 307 74 62 chrY 9867468 9867561 -14845518 - MIR SINE MIR -149 113 12 275 228 17 56 chrY 9867646 9867826 -14845253 + (TA)n Simple_repeat Simple_repeat 1 173 0 * 283 203 51 45 chrY 9867761 9867938 -14845141 + (TATATG)n Simple_repeat Simple_repeat 3 180 0 206 318 15 15 chrY 9868070 9868136 -14844943 - MER5B DNA MER1_type -111 67 2 21 0 0 0 chrY 9868831 9868852 -14844227 + AT_rich Low_complexity Low_complexity 1 21 0 277 279 0 13 chrY 9869136 9869215 -14843864 + Charlie2 DNA MER1_type 369 446 -2416 2110 109 7 33 chrY 9869887 9870191 -14842888 - AluSg SINE Alu -14 296 1 312 250 29 70 chrY 9870827 9871099 -14841980 - Charlie7 DNA MER1_type -3 2609 2349 595 332 52 13 chrY 9871122 9871505 -14841574 - Charlie7 DNA MER1_type -1898 714 317 210 191 21 0 chrY 9872352 9872399 -14840680 + T-rich Low_complexity Low_complexity 5 52 0 238 146 0 0 chrY 9873033 9873074 -14840005 - MLT1K LTR MaLR -64 524 484 332 164 15 0 chrY 9874201 9874268 -14838811 + CT-rich Low_complexity Low_complexity 2 69 0 1708 201 3 6 chrY 9874271 9874584 -14838495 - AluJo SINE Alu 0 312 1 2650 137 8 81 chrY 9874593 9875059 -14838020 + MER4B LTR ERV1 1 576 -203 183 42 0 0 chrY 9875059 9875083 -14837996 + (TTATG)n Simple_repeat Simple_repeat 1 24 0 2650 137 8 81 chrY 9875083 9875274 -14837805 + MER4B LTR ERV1 576 779 0 306 0 0 0 chrY 9875716 9875750 -14837329 + (CA)n Simple_repeat Simple_repeat 2 35 0 990 299 115 56 chrY 9875783 9877138 -14835941 - L1M4 LINE L1 -1692 4454 3019 219 316 7 22 chrY 9877416 9877466 -14835613 + (CATATA)n Simple_repeat Simple_repeat 1 50 -87 1963 155 0 7 chrY 9877466 9877763 -14835316 + AluSx SINE Alu 1 295 -17 219 316 7 22 chrY 9877763 9877851 -14835228 + (CATATA)n Simple_repeat Simple_repeat 50 137 0 570 310 57 62 chrY 9877878 9878317 -14834762 + LTR16C LTR ERVL 51 487 -4 22 0 0 0 chrY 9879512 9879534 -14833545 + AT_rich Low_complexity Low_complexity 1 22 0 1254 95 0 0 chrY 9879784 9879964 -14833115 + (TTTC)n Simple_repeat Simple_repeat 1 359 0 1254 95 0 0 chrY 9879964 9880143 -14832936 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 1252 151 31 9 chrY 9880376 9880601 -14832478 + MER30 DNA MER1_type 1 230 0 2211 92 20 7 chrY 9881351 9881712 -14831367 + AluSp SINE Alu 1 313 0 606 281 120 43 chrY 9883772 9884239 -14828840 + MLT1F1 LTR MaLR 60 562 -5 3223 164 10 92 chrY 9884239 9884508 -14828571 - MER44D DNA MER2_type -1882 705 416 2357 94 32 29 chrY 9884508 9884882 -14828197 + THE1C LTR MaLR 1 375 0 3223 164 10 92 chrY 9884882 9885380 -14827699 - MER44D DNA MER2_type -2171 416 1 275 261 25 84 chrY 9885690 9885773 -14827306 + MIR SINE MIR 80 157 -105 2379 49 0 3 chrY 9885773 9886086 -14826993 + AluY SINE Alu 1 312 0 275 261 25 84 chrY 9886086 9886120 -14826959 + MIR SINE MIR 157 191 -71 203 133 0 0 chrY 9886818 9886848 -14826231 + (TC)n Simple_repeat Simple_repeat 1 30 0 214 301 0 55 chrY 9887879 9887952 -14825127 + L3 LINE CR1 888 956 -621 1556 203 13 23 chrY 9888113 9888413 -14824666 - AluJo SINE Alu -11 301 5 409 309 164 35 chrY 9888546 9888863 -14824216 + L3 LINE CR1 1112 1469 -108 1313 259 73 77 chrY 9889416 9890295 -14822784 + L1MC4 LINE L1 7048 7922 -120 659 182 0 28 chrY 9890402 9890583 -14822496 + (CAGA)n Simple_repeat Simple_repeat 2 177 0 288 130 0 0 chrY 9890617 9890663 -14822416 + (TAGG)n Simple_repeat Simple_repeat 2 47 0 752 173 6 0 chrY 9890664 9890843 -14822236 + (CAGA)n Simple_repeat Simple_repeat 1 180 0 238 77 32 0 chrY 9890844 9890911 -14822168 + (TAGA)n Simple_repeat Simple_repeat 1 69 0 1842 130 11 4 chrY 9890918 9891179 -14821900 + AluSq SINE Alu 1 263 -50 186 103 0 0 chrY 9891190 9891219 -14821860 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 316 242 33 50 chrY 9891234 9891354 -14821725 + L1MC4 LINE L1 7925 8042 0 900 46 33 13 chrY 9892256 9892408 -14820671 + (TTTC)n Simple_repeat Simple_repeat 2 156 0 1960 143 0 13 chrY 9892411 9892711 -14820368 - AluSg SINE Alu -14 296 1 39996 57 1 1 chrY 9892792 9898940 -14814139 + L1PA2 LINE L1 10 6155 0 351 287 143 42 chrY 9898954 9899139 -14813940 + L1MEc LINE L1 1848 2069 -4327 2308 92 7 0 chrY 9899139 9899431 -14813648 - AluSp SINE Alu -19 294 1 351 287 143 42 chrY 9899431 9899510 -14813569 + L1MEc LINE L1 2069 2139 -4257 552 100 0 0 chrY 9899583 9899663 -14813416 + MADE1 DNA Mariner 1 80 0 569 174 8 8 chrY 9899670 9899791 -14813288 + MLT2B2 LTR ERVL 1 121 -394 1924 131 81 0 chrY 9900189 9900472 -14812607 + AluSg SINE Alu 5 310 0 1859 134 87 0 chrY 9900815 9901090 -14811989 - AluSx SINE Alu -13 299 1 208 256 0 0 chrY 9902280 9902323 -14810756 + A-rich Low_complexity Low_complexity 3 45 0 211 336 62 31 chrY 9903504 9903632 -14809447 + MIR SINE MIR 130 261 -1 351 0 0 0 chrY 9903851 9903890 -14809189 + (T)n Simple_repeat Simple_repeat 1 39 0 1925 172 18 18 chrY 9904332 9904733 -14808346 - L1PA16 LINE L1 -2 6164 5764 373 177 0 13 chrY 9904735 9904814 -14808265 - L1P4 LINE L1 -356 5810 5733 343 152 0 0 chrY 9905134 9905200 -14807879 + L1P5 LINE L1 5594 5659 -492 1684 194 0 0 chrY 9905976 9906265 -14806814 + AluJb SINE Alu 1 289 -23 1784 152 9 43 chrY 9906329 9906652 -14806427 + AluJo SINE Alu 1 312 0 23 0 0 0 chrY 9906752 9906775 -14806304 + AT_rich Low_complexity Low_complexity 1 23 0 324 292 19 19 chrY 9906809 9906963 -14806116 + L1MEd LINE L1 1292 1445 -4971 363 265 74 33 chrY 9906963 9907233 -14805846 + L1MEd LINE L1 1300 1662 -4840 1179 247 63 28 chrY 9907244 9907356 -14805723 + L1MEd LINE L1 2837 2944 -3482 2007 143 14 51 chrY 9907356 9907706 -14805373 + MER1B DNA MER1_type 1 337 0 1179 247 63 28 chrY 9907706 9908264 -14804815 + L1MEd LINE L1 2944 3530 -2896 208 182 0 45 chrY 9908273 9908317 -14804762 + GA-rich Low_complexity Low_complexity 1 42 0 29708 40 4 1 chrY 9908340 9912944 -14800135 - L1PA3 LINE L1 -3 6152 1539 4897 84 6 1 chrY 9912953 9913647 -14799432 - L1PA3 LINE L1 -5448 698 2 624 268 168 68 chrY 9913698 9914490 -14798589 + L1MEd LINE L1 3617 4329 -2097 2835 125 9 21 chrY 9914490 9914923 -14798156 - MSTA LTR MaLR 0 428 1 624 268 168 68 chrY 9914923 9914955 -14798124 + L1MEd LINE L1 4329 4356 -2070 368 170 11 21 chrY 9914955 9915049 -14798030 - L1PB1 LINE L1 0 6151 6059 624 268 168 68 chrY 9915049 9915148 -14797931 + L1MEd LINE L1 4356 4444 -1982 1518 72 5 0 chrY 9915148 9915355 -14797724 + L1MA1 LINE L1 6095 6302 0 624 268 168 68 chrY 9915355 9915730 -14797349 + L1MEd LINE L1 4444 5046 -1380 1792 134 33 18 chrY 9916469 9916804 -14796275 - L1MA5A LINE L1 -4 6293 5954 284 166 96 118 chrY 9916932 9917119 -14795960 + MER53 DNA DNA 1 183 -6 240 279 39 16 chrY 9917129 9917258 -14795821 + L1ME2 LINE L1 676 807 -5609 479 316 46 28 chrY 9917526 9917811 -14795268 + L1ME2 LINE L1 5290 5579 -847 1603 268 60 27 chrY 9917831 9918526 -14794553 + L1ME2 LINE L1 5620 6337 -107 2477 106 11 0 chrY 9918620 9918969 -14794110 + THE1A LTR MaLR 1 353 -2 604 94 0 10 chrY 9918971 9919067 -14794012 + THE1A-int LTR MaLR 1 95 -1485 309 310 13 77 chrY 9919400 9919555 -14793524 + L1MC5 LINE L1 7757 7901 -60 1062 154 39 5 chrY 9919608 9919816 -14793263 + L1MB1 LINE L1 5842 6056 -133 1624 177 59 33 chrY 9919817 9920354 -14792725 - MLT2A2 LTR ERVL -6 548 1 387 233 0 33 chrY 9920356 9920476 -14792603 + L1MB1 LINE L1 6053 6168 0 308 302 166 18 chrY 9920542 9920711 -14792368 + MIR3 SINE MIR 1 194 -14 355 197 0 0 chrY 9920764 9920825 -14792254 + L2 LINE L2 3210 3270 -2 1293 280 57 18 chrY 9921549 9921828 -14791251 + MLT2B2 LTR ERVL 1 309 -206 2070 66 69 7 chrY 9921828 9922102 -14790977 - AluY SINE Alu -20 291 1 1293 280 57 18 chrY 9922102 9922318 -14790761 + MLT2B2 LTR ERVL 309 515 0 21 0 0 0 chrY 9923485 9923506 -14789573 + AT_rich Low_complexity Low_complexity 1 21 0 350 232 31 9 chrY 9924385 9924713 -14788366 + (TA)n Simple_repeat Simple_repeat 1 335 0 320 183 29 0 chrY 9924994 9925131 -14787948 + (TA)n Simple_repeat Simple_repeat 1 141 0 188 198 28 9 chrY 9925179 9925285 -14787794 + (TA)n Simple_repeat Simple_repeat 1 108 0 294 295 0 25 chrY 9925774 9925896 -14787183 + CT-rich Low_complexity Low_complexity 1 119 0 184 241 0 29 chrY 9925908 9926078 -14787001 + CT-rich Low_complexity Low_complexity 1 165 0 420 241 0 58 chrY 9926116 9926307 -14786772 + CT-rich Low_complexity Low_complexity 1 180 0 312 211 0 33 chrY 9926323 9926503 -14786576 + CT-rich Low_complexity Low_complexity 4 177 0 241 236 0 30 chrY 9926541 9926706 -14786373 + CT-rich Low_complexity Low_complexity 2 161 0 22 0 0 0 chrY 9927611 9927633 -14785446 + GC_rich Low_complexity Low_complexity 1 22 0 423 0 0 0 chrY 9928172 9928219 -14784860 + (TG)n Simple_repeat Simple_repeat 2 48 0 293 220 28 73 chrY 9928273 9928382 -14784697 - MLT2C1 LTR ERVL -34 363 260 1225 210 38 10 chrY 9928382 9928859 -14784220 + L1M2 LINE L1 5158 5718 -582 304 222 56 11 chrY 9929976 9930066 -14783013 - L1MB3 LINE L1 -3 6180 6087 * 3964 177 38 52 chrY 9930062 9931082 -14781997 - L1MA4 LINE L1 -280 6020 4987 314 73 0 18 chrY 9931082 9931137 -14781942 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 3964 177 38 52 chrY 9931137 9931152 -14781927 - L1MA4 LINE L1 -1313 4987 4973 1702 144 4 22 chrY 9931152 9931430 -14781649 - AluSx SINE Alu -39 273 1 3964 177 38 52 chrY 9931430 9931956 -14781123 - L1MA4 LINE L1 -1327 4973 4490 1509 174 33 7 chrY 9932059 9932335 -14780744 + Tigger1 DNA MER2_type 1 283 -2135 374 150 57 0 chrY 9932343 9932438 -14780641 + L1 LINE L1 4711 4813 -1333 * 695 183 7 39 chrY 9932412 9932565 -14780514 + L1M1 LINE L1 18 165 -7400 1532 77 0 0 chrY 9932572 9932767 -14780312 + THE1A LTR MaLR 1 195 -160 291 324 14 7 chrY 9933257 9933399 -14779680 - HERV17 LTR ERV1 -2164 6462 6320 1041 166 0 52 chrY 9933447 9933658 -14779421 - AluSg/x SINE Alu 0 310 111 323 170 0 0 chrY 9933674 9933727 -14779352 + L1M1 LINE L1 113 165 -7400 617 116 0 0 chrY 9933734 9933820 -14779259 + THE1A LTR MaLR 1 86 -269 512 245 49 86 chrY 9933828 9934073 -14779006 - MER84-int LTR ERV1 -1561 4968 4733 889 315 54 47 chrY 9934484 9935741 -14777338 - MER84-int LTR ERV1 -1114 3840 3304 1075 229 16 12 chrY 9935741 9935994 -14777085 + AluJo SINE Alu 55 308 -4 227 308 44 22 chrY 9936118 9936209 -14776870 - MIR SINE MIR -118 144 52 1986 71 114 11 chrY 9936530 9936810 -14776269 - AluSc SINE Alu 0 309 1 701 23 11 0 chrY 9937781 9937868 -14775211 + (TTTTC)n Simple_repeat Simple_repeat 3 90 0 428 143 114 0 chrY 9938148 9938218 -14774861 + MADE1 DNA Mariner 1 78 -2 204 218 13 77 chrY 9938599 9938677 -14774402 - L2 LINE L2 -78 3235 3163 1396 241 59 25 chrY 9939145 9939217 -14773862 - L1MB7 LINE L1 -14 6170 6102 1662 171 52 80 chrY 9939217 9939603 -14773476 - THE1C LTR MaLR 0 375 1 1396 241 59 25 chrY 9939603 9939973 -14773106 - L1MB7 LINE L1 -82 6102 5713 27 0 0 0 chrY 9940153 9940180 -14772899 + AT_rich Low_complexity Low_complexity 1 27 0 905 301 114 17 chrY 9940260 9940735 -14772344 - L1MC4 LINE L1 -140 7902 7382 8462 71 148 10 chrY 9941363 9942569 -14770510 - SVA Other Other -7 1379 8 189 0 0 0 chrY 9942579 9942600 -14770479 + (GGGAGA)n Simple_repeat Simple_repeat 5 25 0 815 204 22 11 chrY 9942665 9942846 -14770233 - MER20 DNA MER1_type -6 213 31 222 37 0 0 chrY 9943337 9943364 -14769715 + (TG)n Simple_repeat Simple_repeat 2 28 0 24 32 0 0 chrY 9943364 9943395 -14769684 + AT_rich Low_complexity Low_complexity 1 31 0 885 161 0 0 chrY 9943395 9943654 -14769425 + (TA)n Simple_repeat Simple_repeat 1 259 0 302 292 22 0 chrY 9943656 9943745 -14769334 - L1MC4 LINE L1 -1337 6705 6615 30 0 0 0 chrY 9943745 9943775 -14769304 + AT_rich Low_complexity Low_complexity 1 30 0 1931 147 0 0 chrY 9944278 9944602 -14768477 - AluSc SINE Alu 0 326 3 198 0 0 0 chrY 9944604 9944626 -14768453 + (T)n Simple_repeat Simple_repeat 1 22 0 198 0 0 0 chrY 9945457 9945479 -14767600 + (A)n Simple_repeat Simple_repeat 1 22 0 980 206 34 0 chrY 9945854 9946058 -14767021 - MER20 DNA MER1_type -8 211 1 23 0 0 0 chrY 9946724 9946747 -14766332 + AT_rich Low_complexity Low_complexity 1 23 0 2143 62 3 31 chrY 9946775 9947067 -14766012 + AluY SINE Alu 20 303 -8 2522 58 0 6 chrY 9947081 9947394 -14765685 + AluY SINE Alu 1 311 0 1722 229 176 62 chrY 9947429 9948067 -14765012 - L1MC4 LINE L1 -140 7902 7149 1590 177 7 10 chrY 9948067 9948355 -14764724 - AluJo SINE Alu 0 312 26 1722 229 176 62 chrY 9948355 9948535 -14764544 - L1MC4 LINE L1 -893 7149 6991 483 63 0 0 chrY 9949044 9949107 -14763972 + (TTTC)n Simple_repeat Simple_repeat 2 64 0 362 283 178 13 chrY 9950373 9950525 -14762554 - MER5B DNA MER1_type 0 178 2 233 209 0 0 chrY 9950581 9950624 -14762455 + (TG)n Simple_repeat Simple_repeat 2 44 0 193 356 0 0 chrY 9951106 9951165 -14761914 - MIR SINE MIR -71 137 79 533 169 90 0 chrY 9951485 9951574 -14761505 + AluJ/FLAM SINE Alu 3 99 -213 619 204 7 63 chrY 9951575 9951717 -14761362 + FRAM SINE Alu 1 40 0 420 138 0 15 chrY 9951813 9951878 -14761201 + MER20 DNA MER1_type 2 65 -154 22 0 0 0 chrY 9952144 9952166 -14760913 + AT_rich Low_complexity Low_complexity 1 22 0 282 274 34 0 chrY 9952675 9952767 -14760312 + MLT2C1 LTR ERVL 124 194 -203 211 222 0 37 chrY 9952768 9952822 -14760257 + GA-rich Low_complexity Low_complexity 2 53 0 249 294 87 48 chrY 9952822 9952948 -14760131 + MLT2C1 LTR ERVL 212 342 -55 261 233 151 0 chrY 9953003 9953076 -14760003 - MLT2C1 LTR ERVL -296 101 18 1149 139 42 28 chrY 9953081 9953297 -14759782 - THE1C LTR MaLR -156 219 1 352 305 61 12 chrY 9953321 9953485 -14759594 - L1 LINE L1 -1793 4353 4182 42983 39 26 2 chrY 9953496 9959500 -14753579 + L1PA2 LINE L1 3 6155 0 1867 112 0 83 chrY 9960035 9960348 -14752731 - AluSc SINE Alu -22 287 1 319 154 0 31 chrY 9961298 9961363 -14751716 - MLT2B1 LTR ERVL 0 520 458 809 109 36 0 chrY 9961380 9961545 -14751534 + (TAGA)n Simple_repeat Simple_repeat 2 172 0 1848 224 30 74 chrY 9961602 9962143 -14750936 - MLT2B3 LTR ERVL -20 534 18 244 330 52 17 chrY 9962722 9962837 -14750242 + L2 LINE L2 3154 3272 0 1918 136 4 0 chrY 9963101 9963373 -14749706 + AluSc SINE Alu 1 273 -36 369 0 0 0 chrY 9963380 9963421 -14749658 + (TAAA)n Simple_repeat Simple_repeat 1 41 0 1320 199 30 24 chrY 9963513 9963622 -14749457 + AluJb SINE Alu 12 119 -193 276 30 0 0 chrY 9963622 9963655 -14749424 + (CA)n Simple_repeat Simple_repeat 2 34 0 1320 199 30 24 chrY 9963655 9963842 -14749237 + AluJb SINE Alu 119 310 -2 1867 112 0 83 chrY 9964310 9964623 -14748456 + AluSc SINE Alu 1 287 -22 43023 39 26 2 chrY 9965158 9971163 -14741916 - L1PA2 LINE L1 0 6155 3 352 305 61 12 chrY 9971174 9971338 -14741741 + L1 LINE L1 4182 4353 -1793 1149 139 42 28 chrY 9971362 9971578 -14741501 + THE1C LTR MaLR 1 219 -156 261 233 151 0 chrY 9971583 9971656 -14741423 + MLT2C1 LTR ERVL 18 101 -296 249 294 87 48 chrY 9971711 9971837 -14741242 - MLT2C1 LTR ERVL -55 342 212 211 222 0 37 chrY 9971837 9971891 -14741188 + CT-rich Low_complexity Low_complexity 2 53 0 282 274 34 0 chrY 9971892 9971984 -14741095 - MLT2C1 LTR ERVL -203 194 124 22 0 0 0 chrY 9972493 9972515 -14740564 + AT_rich Low_complexity Low_complexity 1 22 0 420 138 0 15 chrY 9972781 9972846 -14740233 - MER20 DNA MER1_type -154 65 2 619 204 7 63 chrY 9972942 9973084 -14739995 - FRAM SINE Alu 0 40 1 533 169 90 0 chrY 9973085 9973174 -14739905 - AluJ/FLAM SINE Alu -213 99 3 193 356 0 0 chrY 9973494 9973553 -14739526 + MIR SINE MIR 79 137 -71 233 209 0 0 chrY 9974035 9974078 -14739001 + (CA)n Simple_repeat Simple_repeat 2 44 0 362 283 178 13 chrY 9974134 9974286 -14738793 + MER5B DNA MER1_type 2 178 0 483 63 0 0 chrY 9975552 9975615 -14737464 + (GAAA)n Simple_repeat Simple_repeat 2 64 0 1722 229 176 62 chrY 9976124 9976304 -14736775 + L1MC4 LINE L1 6991 7149 -893 1590 177 7 10 chrY 9976304 9976592 -14736487 + AluJo SINE Alu 26 312 0 1722 229 176 62 chrY 9976592 9977230 -14735849 + L1MC4 LINE L1 7149 7902 -140 2522 58 0 6 chrY 9977265 9977578 -14735501 - AluY SINE Alu 0 311 1 2143 62 3 31 chrY 9977592 9977884 -14735195 - AluY SINE Alu -8 303 20 23 0 0 0 chrY 9977912 9977935 -14735144 + AT_rich Low_complexity Low_complexity 1 23 0 895 206 34 0 chrY 9978601 9978805 -14734274 + MER20 DNA MER1_type 1 211 -8 198 0 0 0 chrY 9979180 9979202 -14733877 + (T)n Simple_repeat Simple_repeat 1 22 0 198 0 0 0 chrY 9980033 9980055 -14733024 + (A)n Simple_repeat Simple_repeat 1 22 0 1941 147 0 0 chrY 9980057 9980381 -14732698 + AluSc SINE Alu 3 326 0 30 0 0 0 chrY 9980884 9980914 -14732165 + AT_rich Low_complexity Low_complexity 1 30 0 309 292 22 0 chrY 9980914 9981003 -14732076 + L1MC4 LINE L1 6615 6705 -1337 549 174 0 0 chrY 9981005 9981137 -14731942 + (TA)n Simple_repeat Simple_repeat 2 133 0 301 303 22 0 chrY 9981137 9981226 -14731853 - L1MC4 LINE L1 -1339 6703 6613 351 145 0 0 chrY 9981226 9981295 -14731784 + (TA)n Simple_repeat Simple_repeat 1 69 0 222 37 0 0 chrY 9981295 9981322 -14731757 + (CA)n Simple_repeat Simple_repeat 2 28 0 747 204 22 11 chrY 9981813 9981994 -14731085 + MER20 DNA MER1_type 31 213 -6 189 0 0 0 chrY 9982059 9982080 -14730999 + (TCTCCC)n Simple_repeat Simple_repeat 5 25 0 8381 71 148 10 chrY 9982090 9983296 -14729783 + SVA Other Other 8 1379 -7 710 300 114 17 chrY 9983924 9984397 -14728682 + L1MC4 LINE L1 7382 7900 -142 27 0 0 0 chrY 9984479 9984506 -14728573 + AT_rich Low_complexity Low_complexity 1 27 0 1065 239 70 16 chrY 9984686 9985055 -14728024 + L1MB7 LINE L1 5713 6101 -83 1446 176 49 73 chrY 9985072 9985442 -14727637 + THE1C LTR MaLR 15 375 0 204 218 13 77 chrY 9985982 9986060 -14727019 + L2 LINE L2 3163 3235 -78 391 129 114 0 chrY 9986441 9986511 -14726568 - MADE1 DNA Mariner -2 78 1 701 23 11 0 chrY 9986791 9986878 -14726201 + (GAAAA)n Simple_repeat Simple_repeat 3 90 0 1971 71 114 11 chrY 9987849 9988129 -14724950 + AluSc SINE Alu 1 309 0 234 308 44 22 chrY 9988450 9988541 -14724538 + MIR SINE MIR 52 144 -118 1099 229 16 12 chrY 9988665 9988918 -14724161 - AluJo SINE Alu -4 308 55 699 330 47 18 chrY 9988918 9989556 -14723523 + HERVFH21 LTR ERV1 3304 4630 -1114 484 345 13 21 chrY 9989793 9990175 -14722904 + HERVFH21 LTR ERV1 4572 4950 -2806 427 245 49 86 chrY 9990586 9990831 -14722248 + HERVFH21 LTR ERV1 4733 4968 -1561 574 116 0 0 chrY 9990839 9990925 -14722154 - THE1A LTR MaLR -269 86 1 297 170 0 0 chrY 9990932 9990985 -14722094 - L1M1 LINE L1 -7400 165 113 1057 166 0 52 chrY 9991001 9991212 -14721867 + AluSg/x SINE Alu 111 310 0 1435 77 0 0 chrY 9991892 9992087 -14720992 - THE1A LTR MaLR -160 195 1 634 183 7 39 chrY 9992094 9992247 -14720832 - L1M1 LINE L1 -7400 165 18 345 91 36 0 chrY 9992261 9992316 -14720763 - L1 LINE L1 -1379 4767 4711 1377 174 33 7 chrY 9992324 9992600 -14720479 - Tigger1 DNA MER2_type -2135 283 1 3559 179 38 52 chrY 9992705 9993229 -14719850 + L1MA4 LINE L1 4492 5022 -1278 1702 144 4 22 chrY 9993229 9993507 -14719572 + AluSx SINE Alu 1 273 -39 3559 179 38 52 chrY 9993507 9993522 -14719557 + L1MA4 LINE L1 5022 5036 -1264 314 73 0 18 chrY 9993522 9993577 -14719502 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 3559 179 38 52 chrY 9993577 9994597 -14718482 + L1MA4 LINE L1 5036 6020 -280 258 222 56 11 chrY 9994593 9994683 -14718396 + L1MB3 LINE L1 6087 6180 -3 * 1109 191 36 2 chrY 9995826 9996277 -14716802 - L1M2 LINE L1 -611 5689 5158 252 208 15 88 chrY 9996277 9996386 -14716693 + MLT2C1 LTR ERVL 260 430 -34 423 0 0 0 chrY 9996440 9996487 -14716592 + (CA)n Simple_repeat Simple_repeat 2 48 0 22 0 0 0 chrY 9997026 9997048 -14716031 + GC_rich Low_complexity Low_complexity 1 22 0 241 236 0 30 chrY 9997953 9998118 -14714961 + GA-rich Low_complexity Low_complexity 2 161 0 312 211 0 33 chrY 9998156 9998336 -14714743 + GA-rich Low_complexity Low_complexity 4 177 0 420 241 0 58 chrY 9998352 9998543 -14714536 + GA-rich Low_complexity Low_complexity 1 180 0 184 241 0 29 chrY 9998581 9998751 -14714328 + GA-rich Low_complexity Low_complexity 1 165 0 294 295 0 25 chrY 9998763 9998885 -14714194 + GA-rich Low_complexity Low_complexity 1 119 0 263 171 27 9 chrY 9999375 9999486 -14713593 + (TA)n Simple_repeat Simple_repeat 2 114 0 335 220 17 17 chrY 9999530 9999648 -14713431 + (TA)n Simple_repeat Simple_repeat 1 118 0 25 0 0 0 chrY 10000919 10000944 -14712135 + AT_rich Low_complexity Low_complexity 1 25 0 320 343 131 7 chrY 10002680 10002817 -14710262 - L2 LINE L2 -2 3270 3117 1967 163 0 3 chrY 10004114 10004420 -14708659 - AluSq SINE Alu -8 305 1 246 307 71 24 chrY 10004460 10004587 -14708492 + MER94 DNA DNA 2 134 0 290 337 90 6 chrY 10005095 10005273 -14707806 + MIR SINE MIR 44 236 -26 218 237 32 21 chrY 10005278 10005371 -14707708 + (CTA)n Simple_repeat Simple_repeat 1 94 0 1957 179 8 19 chrY 10005394 10005763 -14707316 + MLT1A1 LTR MaLR 1 365 0 1679 165 45 48 chrY 10005782 10005815 -14707264 - THE1C LTR MaLR 0 375 343 1714 178 0 0 chrY 10005815 10006096 -14706983 + AluSx SINE Alu 16 296 -16 1679 165 45 48 chrY 10006096 10006438 -14706641 - THE1C LTR MaLR -32 343 1 274 365 37 23 chrY 10006724 10007023 -14706056 + LTR16B LTR ERVL 37 339 -125 21 0 0 0 chrY 10007114 10007135 -14705944 + AT_rich Low_complexity Low_complexity 1 21 0 209 309 32 21 chrY 10007665 10007759 -14705320 - MIR SINE MIR -26 236 142 277 304 70 9 chrY 10007863 10007978 -14705101 - MIR SINE MIR -34 228 107 1885 174 10 58 chrY 10007979 10008376 -14704703 - MER83B LTR ERV1 0 378 1 769 225 34 10 chrY 10008376 10008585 -14704494 + L1MA1 LINE L1 18 231 -7334 2144 171 14 2 chrY 10008650 10009088 -14703991 + L1MA1 LINE L1 5515 5957 -1608 5639 160 20 14 chrY 10009259 10010288 -14702791 + L1MA1 LINE L1 5985 7031 -690 2043 122 0 13 chrY 10010288 10010591 -14702488 + AluY SINE Alu 1 299 -12 5639 160 20 14 chrY 10010591 10011286 -14701793 + L1MA1 LINE L1 7031 7720 -1 445 185 12 0 chrY 10011307 10011388 -14701691 - MIR SINE MIR -133 129 48 22 80 0 0 chrY 10011514 10011564 -14701515 + AT_rich Low_complexity Low_complexity 1 50 0 1856 163 3 0 chrY 10011784 10012067 -14701012 - AluSc SINE Alu -13 296 13 234 263 38 0 chrY 10012735 10012815 -14700264 + MARNA DNA Mariner 485 567 -19 22 0 0 0 chrY 10012867 10012889 -14700190 + AT_rich Low_complexity Low_complexity 1 22 0 2066 142 3 0 chrY 10013395 10013690 -14699389 - AluY SINE Alu -15 296 1 715 149 50 0 chrY 10014914 10015075 -14698004 - L1MA8 LINE L1 -3 6288 6120 291 264 14 0 chrY 10015333 10015405 -14697674 + MER45 DNA AcHobo 1 73 -880 326 214 8 103 chrY 10015413 10015477 -14697602 - MER45 DNA AcHobo -1396 185 135 2519 56 0 0 chrY 10015477 10015805 -14697274 + AluY SINE Alu 1 311 0 326 214 8 103 chrY 10015805 10015857 -14697222 - MER45 DNA AcHobo -1446 135 80 1692 168 22 32 chrY 10016328 10016697 -14696382 + MLT1A1 LTR MaLR 1 365 0 183 161 32 16 chrY 10016746 10016808 -14696271 + (TA)n Simple_repeat Simple_repeat 1 63 0 225 94 0 0 chrY 10017250 10017282 -14695797 + (T)n Simple_repeat Simple_repeat 1 32 0 214 383 92 0 chrY 10018154 10018295 -14694784 + L2 LINE L2 3117 3270 -2 209 284 75 0 chrY 10018443 10018510 -14694569 - L2 LINE L2 -12 3301 3230 691 229 0 0 chrY 10018555 10018686 -14694393 - FLAM_A SINE Alu -11 131 1 684 113 0 0 chrY 10018780 10018877 -14694202 + AluSc SINE Alu 1 97 -212 307 106 0 0 chrY 10018879 10018926 -14694153 - AluSg/x SINE Alu -160 140 94 1310 247 108 20 chrY 10020256 10020702 -14692377 - MLT1D LTR MaLR 0 505 21 220 336 36 18 chrY 10020908 10021018 -14692061 + L2 LINE L2 3197 3308 -5 370 319 56 0 chrY 10021021 10021165 -14691914 + MIR SINE MIR 40 191 -71 2149 132 0 6 chrY 10021710 10022021 -14691058 - AluY SINE Alu -2 309 1 1862 169 3 3 chrY 10022841 10023137 -14689942 - AluSx SINE Alu -16 296 1 319 266 44 9 chrY 10023691 10023804 -14689275 + L2 LINE L2 3197 3313 0 991 258 21 74 chrY 10024043 10024571 -14688508 + MLT1D LTR MaLR 1 500 -5 616 164 8 41 chrY 10025243 10025365 -14687714 + THE1C LTR MaLR 64 181 -194 32 0 0 0 chrY 10025636 10025668 -14687411 + AT_rich Low_complexity Low_complexity 1 32 0 678 274 6 0 chrY 10025782 10025950 -14687129 + MER45A DNA AcHobo 10 178 0 34 0 0 0 chrY 10028787 10028821 -14684258 + AT_rich Low_complexity Low_complexity 1 34 0 207 100 0 0 chrY 10028844 10028874 -14684205 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 875 308 85 6 chrY 10029334 10029698 -14683381 + MLT1J LTR MaLR 2 394 -117 280 276 29 29 chrY 10029766 10029871 -14683208 - MIR SINE MIR -88 174 70 25 0 0 0 chrY 10031088 10031113 -14681966 + AT_rich Low_complexity Low_complexity 1 25 0 863 235 66 5 chrY 10031113 10031309 -14681770 + AluJb SINE Alu 87 294 -18 225 143 0 0 chrY 10031773 10031808 -14681271 + U2 snRNA snRNA 1 35 -153 556 241 86 25 chrY 10032752 10032914 -14680165 - MER58A DNA MER1_type -16 208 37 253 209 9 136 chrY 10032948 10033058 -14680021 + MIR SINE MIR 117 212 -50 237 211 0 0 chrY 10034735 10034792 -14678287 + (TA)n Simple_repeat Simple_repeat 2 58 0 1708 157 0 47 chrY 10034881 10035199 -14677880 - AluSx SINE Alu -9 303 1 287 51 51 17 chrY 10035206 10035265 -14677814 + T-rich Low_complexity Low_complexity 1 61 0 34553 53 0 0 chrY 10035265 10040442 -14672637 - L1PA3 LINE L1 -24 6131 954 2287 160 20 33 chrY 10041043 10041499 -14671580 - Tigger2 DNA MER2_type -2 2716 2267 297 161 113 0 chrY 10041484 10041546 -14671533 - Tigger2 DNA MER2_type -2649 69 1 * 593 184 9 0 chrY 10041931 10042043 -14671036 + THE1B LTR MaLR 245 367 -8 697 208 52 7 chrY 10042852 10043006 -14670073 - MER20 DNA MER1_type -1 218 58 22553 61 24 3 chrY 10043171 10046086 -14666993 + L1P LINE L1 8 2984 -3162 97 42 0 18 chrY 10046972 10047137 -14665942 + AT_rich Low_complexity Low_complexity 1 162 0 313 342 7 39 chrY 10047374 10047529 -14665550 - L2 LINE L2 -8 3305 3156 234 325 33 86 chrY 10047640 10047791 -14665288 - MER91B DNA MER1_type -1 189 47 1358 183 0 106 chrY 10047832 10048144 -14664935 - AluJo SINE Alu -25 287 9 23 54 0 0 chrY 10048296 10048333 -14664746 + AT_rich Low_complexity Low_complexity 1 37 0 438 57 0 0 chrY 10048742 10048795 -14664284 + LTR46 LTR ERV1 1 53 -407 512 133 0 24 chrY 10048801 10048884 -14664195 + LTR46 LTR ERV1 1 81 -379 887 235 18 14 chrY 10049627 10049844 -14663235 + MER20 DNA MER1_type 2 219 0 774 121 0 50 chrY 10049884 10050024 -14663055 - L1PA8 LINE L1 -2 6170 6038 25 51 0 0 chrY 10050134 10050173 -14662906 + AT_rich Low_complexity Low_complexity 1 39 0 205 111 0 111 chrY 10050590 10050635 -14662444 + (TAAAA)n Simple_repeat Simple_repeat 2 41 0 24 32 0 0 chrY 10051030 10051061 -14662018 + AT_rich Low_complexity Low_complexity 1 31 0 4364 207 51 42 chrY 10051317 10052457 -14660622 - L1MC1 LINE L1 -18 6315 5152 1729 184 3 3 chrY 10052457 10052762 -14660317 - AluSg SINE Alu -5 305 1 4364 207 51 42 chrY 10052762 10053161 -14659918 - L1MC1 LINE L1 -1181 5152 4758 22 94 0 0 chrY 10054118 10054182 -14658897 + AT_rich Low_complexity Low_complexity 1 64 0 183 316 70 80 chrY 10054427 10054614 -14658465 - MIR SINE MIR -77 185 1 3328 141 24 2 chrY 10054739 10055291 -14657788 + L1MA2 LINE L1 5741 6304 0 33 25 0 0 chrY 10055294 10055334 -14657745 + AT_rich Low_complexity Low_complexity 1 40 0 24 32 0 0 chrY 10055407 10055438 -14657641 + AT_rich Low_complexity Low_complexity 1 31 0 538 318 13 0 chrY 10056073 10056227 -14656852 + L2 LINE L2 1094 1249 -2065 503 294 31 19 chrY 10056270 10056430 -14656649 - MER5B DNA MER1_type -9 169 8 347 253 209 0 chrY 10056432 10056567 -14656512 - MER5A DNA MER1_type -18 171 4 765 241 76 38 chrY 10056571 10056887 -14656192 + L2 LINE L2 1305 1632 -1682 582 63 0 0 chrY 10056940 10057019 -14656060 + (GGAA)n Simple_repeat Simple_repeat 4 82 0 269 106 0 21 chrY 10057067 10057114 -14655965 + (GGGA)n Simple_repeat Simple_repeat 2 47 0 529 201 29 0 chrY 10057144 10057283 -14655796 + GA-rich Low_complexity Low_complexity 2 144 0 332 218 73 48 chrY 10057312 10057436 -14655643 + L2 LINE L2 1846 1972 -1342 254 324 103 16 chrY 10058002 10058447 -14654632 - HAL1 LINE L1 -20 2487 2004 572 325 94 22 chrY 10058513 10058873 -14654206 - HAL1 LINE L1 -621 1886 1501 1921 152 0 0 chrY 10058874 10059192 -14653887 - AluSc SINE Alu 0 321 4 406 317 80 43 chrY 10059265 10059565 -14653514 + HAL1 LINE L1 652 962 -1545 181 307 27 27 chrY 10061465 10061540 -14651539 - L2 LINE L2 -62 3210 3136 1748 187 121 23 chrY 10061619 10062009 -14651070 + MSTA LTR MaLR 1 428 0 1545 175 38 67 chrY 10062366 10062422 -14650657 + MLT1A1 LTR MaLR 1 57 -308 1331 201 12 75 chrY 10062422 10062755 -14650324 + AluJb SINE Alu 1 312 0 1545 175 38 67 chrY 10062755 10063070 -14650009 + MLT1A1 LTR MaLR 57 361 -4 261 241 152 62 chrY 10063283 10063395 -14649684 - MIR SINE MIR -108 154 33 2266 84 0 0 chrY 10064065 10064350 -14648729 + AluY SINE Alu 1 285 -26 22 35 0 0 chrY 10064350 10064379 -14648700 + AT_rich Low_complexity Low_complexity 1 29 0 1999 133 4 0 chrY 10065039 10065365 -14647714 + AluSc SINE Alu 1 327 0 586 264 19 0 chrY 10065687 10065842 -14647237 + L1ME LINE L1 5547 5704 -466 312 338 113 0 chrY 10066094 10066227 -14646852 - MIR SINE MIR -47 215 68 795 338 107 40 chrY 10066317 10067211 -14645868 - L2 LINE L2 -271 3042 2087 25 0 0 0 chrY 10067351 10067376 -14645703 + AT_rich Low_complexity Low_complexity 1 25 0 292 226 0 28 chrY 10068667 10068773 -14644306 + CT-rich Low_complexity Low_complexity 4 106 0 506 255 219 20 chrY 10068817 10069013 -14644066 - MER21B LTR ERV1 -609 254 20 385 43 0 0 chrY 10069138 10069185 -14643894 + THE1A LTR MaLR 1 47 -308 * 814 184 0 0 chrY 10069181 10069317 -14643762 + THE1A LTR MaLR 220 355 0 10072 142 7 2 chrY 10069317 10070890 -14642189 + THE1A-int LTR MaLR 1 1580 0 2155 148 32 0 chrY 10070890 10071234 -14641845 + THE1A LTR MaLR 1 355 0 265 250 0 48 chrY 10071538 10071622 -14641457 + CT-rich Low_complexity Low_complexity 3 82 0 696 45 0 0 chrY 10071672 10071760 -14641319 + (TCTA)n Simple_repeat Simple_repeat 2 89 0 2213 133 14 8 chrY 10071939 10072292 -14640787 + THE1A LTR MaLR 1 355 0 1734 166 21 0 chrY 10073311 10073600 -14639479 + AluSp SINE Alu 5 299 -14 183 129 0 0 chrY 10073840 10073871 -14639208 + (CA)n Simple_repeat Simple_repeat 2 32 0 294 29 0 0 chrY 10073877 10073912 -14639167 + (TG)n Simple_repeat Simple_repeat 1 35 0 1373 195 11 25 chrY 10073954 10074140 -14638939 + AluSx SINE Alu 7 189 -123 3002 203 29 83 chrY 10074140 10075164 -14637915 + LTR5 LTR ERVK 1 969 0 1373 195 11 25 chrY 10075164 10075254 -14637825 + AluSx SINE Alu 189 279 -33 251 54 27 0 chrY 10075259 10075296 -14637783 + (CAA)n Simple_repeat Simple_repeat 2 39 0 188 234 0 16 chrY 10076965 10077029 -14636050 + CT-rich Low_complexity Low_complexity 1 63 0 325 203 14 29 chrY 10077030 10077099 -14635980 - L1MC4a LINE L1 -1715 6093 6026 343 148 0 25 chrY 10077125 10077206 -14635873 + (TCCC)n Simple_repeat Simple_repeat 4 82 0 583 177 22 22 chrY 10077207 10077441 -14635638 + CT-rich Low_complexity Low_complexity 1 234 0 243 287 35 0 chrY 10077501 10077588 -14635491 + MER102a DNA MER1_type 241 330 0 29 0 0 0 chrY 10078188 10078217 -14634862 + AT_rich Low_complexity Low_complexity 1 29 0 383 153 28 0 chrY 10078447 10078519 -14634560 - MER20 DNA MER1_type -144 75 2 510 262 37 25 chrY 10078751 10078918 -14634161 + MER5B DNA MER1_type 10 189 0 483 324 72 83 chrY 10079290 10079902 -14633177 - HAL1b LINE L1 -690 658 54 459 289 16 8 chrY 10080796 10080924 -14632155 - MIR SINE MIR -37 225 97 420 312 64 6 chrY 10081463 10081620 -14631459 + MIR SINE MIR 60 225 -37 1222 306 37 27 chrY 10081675 10082191 -14630888 + LTR26 LTR ERV1 68 588 -15 2013 152 0 0 chrY 10082939 10083222 -14629857 - AluSq SINE Alu -24 289 7 547 113 0 0 chrY 10084116 10084196 -14628883 + MADE1 DNA Mariner 1 80 0 196 337 43 33 chrY 10085728 10085820 -14627259 + MIR SINE MIR 35 127 -81 450 267 121 0 chrY 10086023 10086139 -14626940 + FLAM_C SINE Alu 1 130 -3 770 235 8 51 chrY 10086263 10086497 -14626582 + MER58A DNA MER1_type 1 224 0 180 274 95 21 chrY 10086701 10086796 -14626283 - MER5A DNA MER1_type 0 189 88 314 306 52 46 chrY 10087460 10087633 -14625446 - HAL1 LINE L1 -776 1731 1558 2344 120 31 6 chrY 10088067 10088417 -14624662 - THE1B LTR MaLR -5 359 1 3269 114 16 8 chrY 10089331 10089840 -14623239 + LTR10D LTR ERV1 1 513 0 1741 194 0 0 chrY 10090096 10090390 -14622689 - AluSx SINE Alu -18 294 1 218 197 30 15 chrY 10090514 10090580 -14622499 + (TAAA)n Simple_repeat Simple_repeat 1 67 0 1409 195 3 36 chrY 10091581 10091883 -14621196 - AluJo SINE Alu -20 292 1 225 171 71 0 chrY 10092260 10092330 -14620749 + (TTAA)n Simple_repeat Simple_repeat 2 76 0 880 318 73 46 chrY 10092856 10094358 -14618721 + L1ME LINE L1 270 1812 -4584 677 275 120 12 chrY 10094406 10094909 -14618170 + L1ME LINE L1 5033 5602 -633 7258 69 22 1 chrY 10094909 10096608 -14616471 + L1PA5 LINE L1 4437 6152 -2 252 182 0 0 chrY 10096887 10096931 -14616148 + MER3 DNA MER1_type 3 46 -163 271 262 71 0 chrY 10096961 10097045 -14616034 + MER3 DNA MER1_type 120 209 0 264 267 10 69 chrY 10097198 10097299 -14615780 + MER20 DNA MER1_type 32 126 -93 803 224 0 34 chrY 10098526 10098705 -14614374 - FRAM SINE Alu -6 170 1 886 204 68 171 chrY 10099200 10099785 -14613294 + LTR12 LTR ERV1 1 478 -236 * 51279 140 18 13 chrY 10099759 10106154 -14606925 + HERV9 LTR ERV1 54 6505 -1894 2078 105 41 10 chrY 10106154 10106448 -14606631 - AluY SINE Alu -8 303 1 51279 140 18 13 chrY 10106448 10108354 -14604725 + HERV9 LTR ERV1 6505 8399 0 1564 169 50 55 chrY 10108354 10108772 -14604307 + LTR12 LTR ERV1 1 480 -234 227 273 60 33 chrY 10108831 10108981 -14604098 + L1ME LINE L1 5617 5770 -420 510 372 19 12 chrY 10110145 10110403 -14602676 + MIR SINE MIR 3 262 0 412 229 78 54 chrY 10111120 10111195 -14601884 + Charlie8 DNA MER1_type 34 106 -224 2132 99 3 32 chrY 10111195 10111507 -14601572 + AluY SINE Alu 3 305 -6 412 229 78 54 chrY 10111507 10111636 -14601443 + Charlie8 DNA MER1_type 106 243 -87 459 316 35 44 chrY 10111718 10111946 -14601133 - MIR SINE MIR -32 230 5 2166 130 27 14 chrY 10113092 10113462 -14599617 + THE1C LTR MaLR 1 375 0 1442 282 20 5 chrY 10113611 10114001 -14599078 - MSTD LTR MaLR 0 396 1 298 306 57 19 chrY 10114231 10114440 -14598639 + L1M4 LINE L1 4962 5178 -968 262 272 114 0 chrY 10114492 10114606 -14598473 + MLT1I LTR MaLR 5 131 -278 1113 194 54 60 chrY 10117373 10117620 -14595459 - MER96B DNA MER1_type? -69 348 102 2669 129 11 5 chrY 10117620 10118054 -14595025 + L1PA13 LINE L1 5724 6160 -3 1113 194 54 60 chrY 10118054 10118156 -14594923 - MER96B DNA MER1_type? -315 102 1 219 275 38 38 chrY 10118523 10118603 -14594476 - L2 LINE L2 0 3313 3234 209 363 50 0 chrY 10118887 10118967 -14594112 - L2 LINE L2 -516 2798 2715 2786 208 6 9 chrY 10119131 10119660 -14593419 - MER1A DNA MER1_type 0 527 1 230 259 49 0 chrY 10119776 10119857 -14593222 - L1MA9 LINE L1 -5 6307 6223 330 288 8 25 chrY 10119865 10119983 -14593096 - L1MC4 LINE L1 -1339 6703 6588 262 115 26 39 chrY 10119983 10120061 -14593018 + (TA)n Simple_repeat Simple_repeat 2 78 0 419 277 8 17 chrY 10120972 10121091 -14591988 + MIR SINE MIR 97 214 -48 22 0 0 0 chrY 10121170 10121192 -14591887 + AT_rich Low_complexity Low_complexity 1 22 0 2870 6 0 0 chrY 10121649 10121960 -14591119 - AluYa5 SINE Alu 0 311 1 2042 145 0 3 chrY 10122624 10122921 -14590158 - AluSg SINE Alu -14 296 1 9991 191 33 35 chrY 10123124 10126582 -14586497 - L1MA6 LINE L1 0 6300 2837 1894 247 22 21 chrY 10126581 10127296 -14585783 + L1M1 LINE L1 3474 4192 -3373 * 1695 181 0 14 chrY 10127296 10127630 -14585449 + AluSx SINE Alu 1 330 0 1894 247 22 21 chrY 10127630 10127659 -14585420 + L1M1 LINE L1 4192 4219 -3346 381 374 36 12 chrY 10128120 10128369 -14584710 + MIR SINE MIR 6 260 -2 25 0 0 0 chrY 10129877 10129902 -14583177 + AT_rich Low_complexity Low_complexity 1 25 0 658 232 7 26 chrY 10130517 10130668 -14582411 + MER20 DNA MER1_type 16 163 -56 338 224 30 0 chrY 10130749 10130816 -14582263 - Charlie8 DNA MER1_type -4 2413 2345 1884 167 7 7 chrY 10131240 10131545 -14581534 + AluSq SINE Alu 1 305 -8 21 36 0 0 chrY 10131579 10131607 -14581472 + AT_rich Low_complexity Low_complexity 1 28 0 182 365 14 0 chrY 10132961 10133035 -14580044 - MIR SINE MIR -67 141 67 200 122 24 0 chrY 10133121 10133162 -14579917 + (TG)n Simple_repeat Simple_repeat 1 42 0 25 31 0 0 chrY 10133625 10133657 -14579422 + AT_rich Low_complexity Low_complexity 1 32 0 250 330 83 49 chrY 10134240 10134614 -14578465 - L2 LINE L2 -166 3106 2716 317 224 129 0 chrY 10134617 10134702 -14578377 + LTR28 LTR ERV1 2 97 -923 2855 3 0 0 chrY 10134728 10135036 -14578043 + AluYa5 SINE Alu 1 308 -3 1096 212 111 80 chrY 10135090 10135738 -14577341 + LTR28 LTR ERV1 109 950 -70 253 265 245 10 chrY 10135805 10135903 -14577176 + LTR28 LTR ERV1 900 1020 0 2082 201 50 2 chrY 10135979 10136417 -14576662 + LOR1b LTR ERV1 1 459 -2 286 89 62 36 chrY 10136686 10136798 -14576281 + (TA)n Simple_repeat Simple_repeat 1 115 0 235 167 37 0 chrY 10137219 10137273 -14575806 + L1MC4 LINE L1 6648 6703 -1339 225 0 0 0 chrY 10137571 10137596 -14575483 + (T)n Simple_repeat Simple_repeat 1 25 0 2754 16 0 3 chrY 10138048 10138355 -14574724 + AluYb8 SINE Alu 1 306 -12 2254 114 0 0 chrY 10138375 10138673 -14574406 + AluY SINE Alu 1 298 -13 1209 224 0 34 chrY 10139516 10139779 -14573300 - AluJo SINE Alu -16 296 43 1850 165 0 20 chrY 10140868 10141171 -14571908 + AluSx SINE Alu 9 305 -7 1327 213 21 31 chrY 10141388 10141679 -14571400 - AluJo SINE Alu -24 288 1 298 337 29 5 chrY 10141711 10141916 -14571163 - L1ME3 LINE L1 -8 6154 5945 509 221 12 14 chrY 10142061 10142409 -14570670 + GA-rich Low_complexity Low_complexity 1 347 0 265 246 29 23 chrY 10142425 10142596 -14570483 + GA-rich Low_complexity Low_complexity 4 175 0 248 275 69 50 chrY 10143944 10144104 -14568975 + LTR16C LTR ERVL 158 320 -171 1824 177 0 0 chrY 10144482 10144770 -14568309 - AluSx SINE Alu -24 288 1 260 278 11 67 chrY 10144980 10145070 -14568009 + L2 LINE L2 3187 3271 -1 497 250 8 0 chrY 10145219 10145347 -14567732 - MER3 DNA MER1_type -13 196 68 23 33 0 0 chrY 10145500 10145530 -14567549 + AT_rich Low_complexity Low_complexity 1 30 0 1726 195 30 0 chrY 10145741 10146044 -14567035 + AluSx SINE Alu 1 312 0 5211 140 96 0 chrY 10146128 10147128 -14565951 - L1PA8 LINE L1 0 6172 5152 32086 118 8 14 chrY 10147166 10153340 -14559739 + L1PA6 LINE L1 13 6146 -8 255 259 173 7 chrY 10154343 10154482 -14558597 - L2 LINE L2 -18 3295 3134 436 158 10 10 chrY 10155535 10155636 -14557443 + CT-rich Low_complexity Low_complexity 2 102 0 1072 241 55 0 chrY 10157429 10157682 -14555397 - AluJo SINE Alu -22 290 24 344 288 111 15 chrY 10157798 10157996 -14555083 + L1MC4a LINE L1 5779 5995 -1813 294 200 0 0 chrY 10158131 10158201 -14554878 + L1MC4a LINE L1 7656 7725 -83 1118 273 89 25 chrY 10158268 10158954 -14554125 + L1ME2 LINE L1 5362 6098 -66 259 324 177 47 chrY 10159784 10160083 -14552996 + L3 LINE CR1 152 489 -1088 24 53 0 0 chrY 10160324 10160362 -14552717 + AT_rich Low_complexity Low_complexity 1 38 0 1537 208 47 26 chrY 10161666 10162093 -14550986 - L1MC3 LINE L1 -21 7764 7329 210 273 0 26 chrY 10162093 10162170 -14550909 + T-rich Low_complexity Low_complexity 2 76 0 810 162 0 0 chrY 10162234 10162351 -14550728 - FRAM SINE Alu -24 152 36 60 73 0 0 chrY 10162622 10162745 -14550334 + AT_rich Low_complexity Low_complexity 1 123 0 758 210 29 147 chrY 10163187 10163285 -14549794 + MLT2D LTR ERVL 6 114 -300 597 241 0 0 chrY 10163285 10163418 -14549661 - L1MA2 LINE L1 0 6304 6172 758 210 29 147 chrY 10163418 10163728 -14549351 + MLT2D LTR ERVL 114 366 -48 273 135 0 0 chrY 10163733 10163785 -14549294 + (TG)n Simple_repeat Simple_repeat 1 52 0 1073 259 29 38 chrY 10164522 10164865 -14548214 - MER58B DNA MER1_type 0 341 2 2525 35 0 0 chrY 10165090 10165404 -14547675 - L1PA3 LINE L1 -469 5686 5373 3826 33 0 0 chrY 10165404 10165861 -14547218 + L1PA3 LINE L1 5699 6155 0 1402 211 0 7 chrY 10165975 10166254 -14546825 - AluJb SINE Alu 0 312 36 1921 152 48 25 chrY 10167035 10167391 -14545688 - THE1B LTR MaLR 0 364 1 207 174 0 65 chrY 10167556 10167602 -14545477 + L2 LINE L2 3267 3309 -4 455 283 116 41 chrY 10168346 10168785 -14544294 - L1ME4a LINE L1 -54 6067 5596 198 0 0 0 chrY 10169232 10169254 -14543825 + (A)n Simple_repeat Simple_repeat 1 22 0 529 144 18 27 chrY 10169585 10169696 -14543383 - L1MA10 LINE L1 -4 6330 6221 2186 181 5 34 chrY 10169905 10170352 -14542727 - L1PB1 LINE L1 -9 6142 5709 971 310 108 3 chrY 10170465 10171040 -14542039 + L1ME3A LINE L1 5446 6080 -90 1348 212 58 0 chrY 10171070 10171488 -14541591 + AluJo SINE Alu 11 444 0 312 146 0 0 chrY 10171488 10171536 -14541543 + (GGGA)n Simple_repeat Simple_repeat 3 50 0 763 168 15 19 chrY 10171537 10171806 -14541273 + GA-rich Low_complexity Low_complexity 1 268 0 1153 117 4 18 chrY 10173399 10173763 -14539316 + (TTC)n Simple_repeat Simple_repeat 1 540 0 794 201 2 10 chrY 10173765 10174141 -14538938 + CT-rich Low_complexity Low_complexity 1 373 0 240 35 0 0 chrY 10174177 10174206 -14538873 + (TTG)n Simple_repeat Simple_repeat 2 30 0 * 695 126 0 8 chrY 10174204 10174323 -14538756 + (TTC)n Simple_repeat Simple_repeat 3 120 0 1259 211 126 0 chrY 10174435 10174696 -14538383 + AluJb SINE Alu 5 298 -4 1009 308 85 47 chrY 10174806 10175403 -14537676 + L2 LINE L2 1822 2441 -873 721 269 82 8 chrY 10175631 10176007 -14537072 - L1M4 LINE L1 -1728 4418 4015 1505 199 39 30 chrY 10176052 10176413 -14536666 + THE1B LTR MaLR 1 364 0 228 288 0 0 chrY 10177139 10177205 -14535874 + AluJ SINE Alu 66 131 -171 1512 177 40 40 chrY 10179031 10179404 -14533675 - THE1C LTR MaLR -2 373 1 23958 148 18 15 chrY 10179983 10186398 -14526681 + L1PA8 LINE L1 6 6466 -21 228 240 21 10 chrY 10186399 10186495 -14526584 + (TA)n Simple_repeat Simple_repeat 1 97 0 363 224 50 40 chrY 10186505 10186706 -14526373 + L1M4 LINE L1 5143 5345 -801 363 60 0 0 chrY 10188607 10188657 -14524422 + (TATG)n Simple_repeat Simple_repeat 2 51 0 761 189 50 142 chrY 10188676 10189077 -14524002 - MLT1A1 LTR MaLR 0 365 2 550 58 23 0 chrY 10189085 10189172 -14523907 + (TCTA)n Simple_repeat Simple_repeat 4 92 0 416 265 0 0 chrY 10189188 10189290 -14523789 - MLT2C1 LTR ERVL -48 349 248 534 225 189 28 chrY 10189463 10189712 -14523367 + LTR50 LTR ERVL 1 289 -506 476 100 0 0 chrY 10190431 10190534 -14522545 + Alu SINE Alu 220 322 0 316 257 111 47 chrY 10191004 10191175 -14521904 - MIR SINE MIR -49 213 32 1483 230 21 0 chrY 10191372 10191655 -14521424 - AluJo SINE Alu -22 290 2 931 192 0 23 chrY 10191695 10191872 -14521207 + AluJ SINE Alu 138 310 -2 186 343 14 14 chrY 10191945 10192015 -14521064 + L2 LINE L2 3015 3084 -188 1602 155 0 0 chrY 10192903 10193142 -14519937 + AluSc SINE Alu 51 289 -20 180 0 0 0 chrY 10193143 10193163 -14519916 + (TA)n Simple_repeat Simple_repeat 1 20 0 305 175 36 23 chrY 10193163 10193246 -14519833 - L1MC4 LINE L1 -1339 6983 1992 307 131 33 0 chrY 10194153 10194214 -14518865 - MLT2B1 LTR ERVL 0 520 458 448 59 29 0 chrY 10194214 10194282 -14518797 + (TAGA)n Simple_repeat Simple_repeat 1 70 0 1903 213 46 64 chrY 10194289 10194833 -14518246 - MLT2B3 LTR ERVL -20 534 1 2106 103 10 17 chrY 10195184 10195475 -14517604 + AluY SINE Alu 3 291 -20 285 51 0 0 chrY 10196056 10196095 -14516984 + (TC)n Simple_repeat Simple_repeat 2 40 0 2068 139 5 49 chrY 10196296 10196707 -14516372 + MER31A LTR ERV1 1 393 -92 402 198 10 0 chrY 10196831 10196927 -14516152 + MER31A LTR ERV1 388 484 -1 2605 116 57 7 chrY 10198023 10198446 -14514633 + MLT2A1 LTR ERVL 1 444 0 2004 158 0 0 chrY 10198538 10198835 -14514244 + AluSx SINE Alu 1 297 -15 1984 169 0 0 chrY 10199812 10200114 -14512965 - AluSx SINE Alu -6 306 5 655 251 42 0 chrY 10200275 10200442 -14512637 - MER20 DNA MER1_type -9 210 37 1529 248 3 0 chrY 10201022 10201333 -14511746 - AluJb SINE Alu 0 312 1 289 339 88 10 chrY 10201501 10201722 -14511357 + MIR SINE MIR 22 256 -6 230 133 17 17 chrY 10202031 10202047 -14511032 - L1MA10 LINE L1 0 6334 6319 691 268 74 4 chrY 10202047 10202278 -14510801 - L1ME1 LINE L1 -7 6159 5913 294 179 0 0 chrY 10202282 10202338 -14510741 + Alu SINE Alu 243 298 -2 1482 122 22 22 chrY 10202564 10202835 -14510244 + L1MA8 LINE L1 6013 6283 -8 272 292 15 0 chrY 10203205 10203270 -14509809 + L2 LINE L2 3207 3272 0 25 31 0 0 chrY 10204750 10204782 -14508297 + AT_rich Low_complexity Low_complexity 1 32 0 1629 193 10 7 chrY 10204920 10205215 -14507864 + AluSx SINE Alu 1 296 -16 552 257 243 27 chrY 10205585 10205881 -14507198 + L2 LINE L2 2131 2490 -824 395 300 70 51 chrY 10205905 10206162 -14506917 - HERVL LTR ERVL -2048 2948 2687 298 328 37 0 chrY 10206295 10206489 -14506590 - HERVL LTR ERVL -2994 2491 2286 302 353 0 0 chrY 10206780 10206896 -14506183 - HERVL LTR ERVL -3165 1831 1716 1213 241 0 0 chrY 10207599 10207844 -14505235 + AluJo SINE Alu 44 288 -24 2039 114 50 0 chrY 10207907 10208224 -14504855 - LTR10C LTR ERV1 0 591 259 15143 54 1 5 chrY 10208237 10210962 -14502117 - L1PA4 LINE L1 -8 6147 3430 13808 146 17 37 chrY 10210964 10214033 -14499046 + L1PA4 LINE L1 732 3740 -2721 904 230 14 23 chrY 10214318 10214535 -14498544 - MER20 DNA MER1_type 0 219 5 242 206 15 0 chrY 10214717 10214785 -14498294 + (TA)n Simple_repeat Simple_repeat 1 69 0 1832 218 36 32 chrY 10214945 10215412 -14497667 - MER21B LTR ERV1 -61 802 334 2132 145 16 26 chrY 10215470 10215849 -14497230 + THE1C LTR MaLR 1 375 0 292 203 0 14 chrY 10215854 10215923 -14497156 - MER21B LTR ERV1 -548 315 248 919 241 82 47 chrY 10215923 10216264 -14496815 + MLT1A1 LTR MaLR 1 353 -12 545 336 22 9 chrY 10216275 10216504 -14496575 - MER21B LTR ERV1 -609 254 23 314 292 19 28 chrY 10216855 10216982 -14496097 + CT-rich Low_complexity Low_complexity 1 125 0 1603 174 70 4 chrY 10217130 10217400 -14495679 + AluSg SINE Alu 1 288 -22 243 257 14 14 chrY 10219226 10219300 -14493779 - MLT2F LTR ERVL -173 490 417 230 383 31 26 chrY 10219337 10219564 -14493515 - MLT2F LTR ERVL -206 457 230 1555 218 50 2 chrY 10219663 10220049 -14493030 - LTR39 LTR ERV1 0 783 295 1147 193 39 32 chrY 10220213 10220493 -14492586 - LTR39 LTR ERV1 -501 282 1 276 286 0 0 chrY 10220505 10220568 -14492511 - MLT2E LTR ERVL -524 104 42 464 309 49 58 chrY 10222632 10222855 -14490224 + MIR SINE MIR 13 233 -29 37964 71 4 1 chrY 10223233 10229258 -14483821 + L1PA4 LINE L1 104 6150 -5 198 396 73 0 chrY 10230200 10230296 -14482783 + L2 LINE L2 3116 3218 -54 316 296 64 63 chrY 10230536 10230643 -14482436 + MIR SINE MIR 3 108 -154 505 258 96 34 chrY 10230643 10230821 -14482258 + MER5A DNA MER1_type 1 189 0 316 296 64 63 chrY 10230821 10230936 -14482143 + MIR SINE MIR 108 224 -38 276 30 0 0 chrY 10231052 10231085 -14481994 + (TA)n Simple_repeat Simple_repeat 2 34 0 928 254 9 0 chrY 10231138 10231351 -14481728 + MER20 DNA MER1_type 1 215 -4 1930 162 19 50 chrY 10234327 10234703 -14478376 - THE1B LTR MaLR 0 364 1 25 0 0 0 chrY 10234712 10234737 -14478342 + AT_rich Low_complexity Low_complexity 1 25 0 1990 194 28 44 chrY 10235050 10235484 -14477595 + MSTC LTR MaLR 2 428 0 428 230 158 53 chrY 10235587 10235739 -14477340 - MER5A DNA MER1_type 0 189 22 627 294 107 3 chrY 10235754 10235931 -14477148 - MER58B DNA MER1_type -2079 341 184 1502 188 56 17 chrY 10235931 10236219 -14476860 - AluJb SINE Alu -3 309 11 627 294 107 3 chrY 10236219 10236350 -14476729 - MER58B DNA MER1_type -2236 184 1 266 238 0 0 chrY 10237120 10237183 -14475896 - HsTC2 DNA Tc2 -6 1892 1830 342 0 0 0 chrY 10237199 10237237 -14475842 + (CA)n Simple_repeat Simple_repeat 1 38 0 345 279 99 15 chrY 10237603 10237920 -14475159 - MLT1J1 LTR MaLR -73 377 30 1671 130 17 0 chrY 10238098 10238336 -14474743 - AluSx SINE Alu -11 301 60 23 0 0 0 chrY 10239119 10239142 -14473937 + AT_rich Low_complexity Low_complexity 1 23 0 1473 114 0 5 chrY 10239142 10239362 -14473717 - L1PA7 LINE L1 -7 6147 5929 4896 63 5 5 chrY 10239368 10240258 -14472821 + L1PA7 LINE L1 5032 5923 -231 4033 205 38 21 chrY 10240266 10242168 -14470911 + L1MB2 LINE L1 4223 6169 -2 264 293 114 0 chrY 10243130 10243253 -14469826 - LTR16C LTR ERVL 0 491 355 770 218 31 59 chrY 10243265 10243454 -14469625 - MER33 DNA MER1_type -2273 312 134 1770 119 43 11 chrY 10243454 10243731 -14469348 - AluSq SINE Alu -27 286 1 770 218 31 59 chrY 10243731 10243862 -14469217 - MER33 DNA MER1_type -2451 134 1 206 337 117 29 chrY 10244267 10244472 -14468607 - L3b LINE CR1 -116 1467 1245 22 35 0 0 chrY 10245907 10245936 -14467143 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chrY 10246359 10246387 -14466692 + AT_rich Low_complexity Low_complexity 1 28 0 369 0 0 0 chrY 10246425 10246466 -14466613 + (TTTAA)n Simple_repeat Simple_repeat 1 41 0 1899 121 13 0 chrY 10246467 10246773 -14466306 - L1PA10 LINE L1 -21 6147 5838 229 343 116 17 chrY 10247523 10247695 -14465384 - MIR SINE MIR -71 191 3 1637 204 7 18 chrY 10247996 10248281 -14464798 - AluJo SINE Alu -30 282 1 14107 117 70 34 chrY 10250080 10253828 -14459251 + HERV9 LTR ERV1 17 2438 0 9964 100 85 45 chrY 10253828 10256805 -14456274 + HERV9 LTR ERV1 514 2438 0 185 191 0 21 chrY 10257013 10257060 -14456019 + (TA)n Simple_repeat Simple_repeat 1 46 0 2513 119 3 0 chrY 10257273 10257627 -14455452 + THE1A LTR MaLR 1 355 0 10254 127 5 29 chrY 10257631 10258011 -14455068 + THE1A-int LTR MaLR 5 393 -1187 2247 113 0 13 chrY 10258011 10258321 -14454758 + AluY SINE Alu 1 306 -5 10254 127 5 29 chrY 10258321 10259555 -14453524 + THE1A-int LTR MaLR 393 1580 0 1344 130 36 70 chrY 10259555 10259957 -14453122 + THE1A LTR MaLR 1 355 0 480 306 21 58 chrY 10259961 10260031 -14453048 - L1ME LINE L1 -439 5723 5652 2141 130 0 3 chrY 10260031 10260332 -14452747 + AluY SINE Alu 1 300 -11 480 306 21 58 chrY 10260332 10260643 -14452436 - L1ME LINE L1 -510 5652 5356 2271 94 0 0 chrY 10261080 10261367 -14451712 + AluY SINE Alu 1 287 -24 1074 195 76 0 chrY 10261529 10261584 -14451495 - L1PB4 LINE L1 -308 5848 5799 306 73 0 0 chrY 10261584 10261625 -14451454 + (TG)n Simple_repeat Simple_repeat 2 42 0 1074 195 76 0 chrY 10261625 10261820 -14451259 - L1PB4 LINE L1 -357 5799 5579 820 117 8 17 chrY 10261820 10261940 -14451139 + AluSg/x SINE Alu 168 286 -23 1435 154 0 0 chrY 10261943 10262203 -14450876 - L1PB4 LINE L1 -570 5586 5327 786 259 47 0 chrY 10262382 10262575 -14450504 + MER58A DNA MER1_type 6 207 -17 725 205 16 16 chrY 10263427 10263817 -14449262 + CT-rich Low_complexity Low_complexity 1 390 0 1700 207 35 0 chrY 10264340 10264717 -14448362 + MLT1B LTR MaLR 1 390 0 409 176 15 0 chrY 10265024 10265092 -14447987 - Alu SINE Alu -14 297 229 1924 133 0 7 chrY 10266319 10266628 -14446451 + AluY SINE Alu 1 307 0 426 333 98 40 chrY 10268062 10268440 -14444639 + HAL1 LINE L1 2 401 -2106 369 109 0 0 chrY 10268525 10268580 -14444499 + (CACGA)n Simple_repeat Simple_repeat 4 58 0 686 245 96 40 chrY 10268610 10268985 -14444094 - L1MEc LINE L1 -5141 1255 860 22 0 0 0 chrY 10269445 10269467 -14443612 + AT_rich Low_complexity Low_complexity 1 22 0 294 228 40 0 chrY 10270917 10271018 -14442061 - Charlie2 DNA MER1_type -28 2834 2730 222 62 0 0 chrY 10271025 10271057 -14442022 + (TC)n Simple_repeat Simple_repeat 2 33 0 214 156 31 0 chrY 10271056 10271120 -14441959 + (TA)n Simple_repeat Simple_repeat 1 66 0 * 23 92 0 0 chrY 10271135 10271200 -14441879 + AT_rich Low_complexity Low_complexity 1 65 0 2655 184 60 9 chrY 10271376 10271958 -14441121 - L1MC1 LINE L1 -178 6155 5544 225 292 42 0 chrY 10271964 10272036 -14441043 + L2 LINE L2 3227 3301 -12 601 272 12 19 chrY 10272051 10272213 -14440866 - MER5A DNA MER1_type -28 161 1 652 192 275 11 chrY 10272596 10272872 -14440207 - L1MC4 LINE L1 -215 7827 7479 377 273 22 98 chrY 10273631 10273814 -14439265 + MIR SINE MIR 28 196 -66 28 48 0 0 chrY 10274209 10274251 -14438828 + AT_rich Low_complexity Low_complexity 1 42 0 1607 207 30 3 chrY 10274932 10275304 -14437775 + MLT1B LTR MaLR 5 386 -4 249 218 0 18 chrY 10276127 10276182 -14436897 + (CATATA)n Simple_repeat Simple_repeat 6 59 0 405 0 0 0 chrY 10276243 10276288 -14436791 + (CA)n Simple_repeat Simple_repeat 2 46 0 3182 221 87 25 chrY 10276288 10277033 -14436046 + MER21A LTR ERV1 24 828 -103 2256 140 26 0 chrY 10277033 10277384 -14435695 + THE1B LTR MaLR 1 360 -4 3182 221 87 25 chrY 10277384 10277479 -14435600 + MER21A LTR ERV1 828 916 -15 2427 134 11 8 chrY 10279229 10279603 -14433476 - THE1C LTR MaLR 0 375 1 263 242 36 38 chrY 10279993 10280115 -14432964 + AluS SINE Alu 1 99 -204 284 298 127 48 chrY 10280881 10281109 -14431970 + MLT1H LTR MaLR 58 303 -246 278 298 12 12 chrY 10281329 10281413 -14431666 + MER2 DNA MER2_type 2 85 -260 553 200 18 120 chrY 10281470 10281695 -14431384 - LTR12 LTR ERV1 -262 452 251 4102 280 14 7 chrY 10282006 10283198 -14429881 - HERV17 LTR ERV1 0 8626 7426 8500 202 27 21 chrY 10283208 10284890 -14428189 - HERV17 LTR ERV1 -4661 3965 2273 1940 212 17 53 chrY 10285112 10285662 -14427417 - HERV17 LTR ERV1 -7697 560 1 700 230 32 39 chrY 10285692 10285935 -14427144 - LTR12 LTR ERV1 -95 685 228 258 150 0 0 chrY 10286225 10286265 -14426814 + MER2 DNA MER2_type 93 132 -213 442 239 110 0 chrY 10286277 10286432 -14426647 - MER2 DNA MER2_type -23 322 151 1847 212 3 20 chrY 10286432 10286747 -14426332 + MER7A DNA MER2_type 1 309 -2729 4155 170 41 36 chrY 10286747 10287522 -14425557 + MER4E LTR ERV1 1 779 0 1847 212 3 20 chrY 10287522 10287560 -14425519 + MER7A DNA MER2_type 309 346 0 809 222 0 0 chrY 10287560 10287712 -14425367 - MER2 DNA MER2_type -193 152 1 227 176 157 148 chrY 10287712 10287926 -14425153 + MER2 DNA MER2_type 130 345 0 358 356 4 29 chrY 10288371 10288610 -14424469 + MIR SINE MIR 30 262 0 395 127 0 0 chrY 10289016 10289079 -14424000 + MER4E LTR ERV1 715 777 -2 435 167 0 0 chrY 10291469 10291541 -14421538 - LTR12 LTR ERV1 -642 72 1 7744 148 4 2 chrY 10291546 10292745 -14420334 - HERV9 LTR ERV1 -4 8395 7194 * 22472 138 6 11 chrY 10292742 10296222 -14416857 - HERV9 LTR ERV1 -2689 5710 2250 785 148 0 7 chrY 10296225 10296360 -14416719 - HERVH LTR ERV1 -1967 5746 5613 5796 138 14 10 chrY 10296373 10297298 -14415781 - HERVH LTR ERV1 -2564 5149 4221 1889 159 20 5 chrY 10297291 10297622 -14415457 - HERVH LTR ERV1 -3414 4840 3993 * 1157 172 30 30 chrY 10297617 10297849 -14415230 - HERVH LTR ERV1 -3978 3735 3504 * 5572 143 1 9 chrY 10297846 10298738 -14414341 - HERVH LTR ERV1 -4728 2985 2101 * 7363 148 15 48 chrY 10298733 10300599 -14412480 - HERVH LTR ERV1 -5760 1953 1 1978 121 48 8 chrY 10300599 10300980 -14412099 - LTR7 LTR ERV1 0 450 1 1826 154 7 3 chrY 10303681 10304001 -14409078 + AluSq SINE Alu 1 321 0 1535 198 213 34 chrY 10304071 10304536 -14408543 - LTR10A LTR ERV1 -61 548 1 436 138 27 69 chrY 10305022 10305210 -14407869 + GA-rich Low_complexity Low_complexity 1 180 0 1539 188 14 4 chrY 10305296 10305573 -14407506 + AluSx SINE Alu 16 295 -17 227 275 9 0 chrY 10305591 10305700 -14407379 + GA-rich Low_complexity Low_complexity 3 112 0 1646 179 4 0 chrY 10305751 10306019 -14407060 + AluSx SINE Alu 5 273 -39 1642 191 9 19 chrY 10307159 10307474 -14405605 + AluJo SINE Alu 1 312 0 415 238 122 12 chrY 10307728 10307892 -14405187 + MLT1C LTR MaLR 164 345 -122 1026 270 75 32 chrY 10307930 10308350 -14404729 + MLT1C LTR MaLR 24 466 -1 836 169 36 49 chrY 10308950 10309167 -14403912 + L1PA3 LINE L1 5258 5467 -684 1281 28 0 0 chrY 10309167 10309309 -14403770 + L1PA4 LINE L1 6006 6147 -8 836 169 36 49 chrY 10309309 10309337 -14403742 + L1PA3 LINE L1 5467 5494 -657 45 34 0 0 chrY 10309337 10309396 -14403683 + AT_rich Low_complexity Low_complexity 1 59 0 1017 35 0 0 chrY 10309396 10309511 -14403568 - L1PA4 LINE L1 -8 6147 6033 1457 41 0 0 chrY 10309511 10309682 -14403397 + L1PA3 LINE L1 5655 5825 -330 22 23 0 45 chrY 10309682 10309709 -14403370 + AT_rich Low_complexity Low_complexity 1 27 -15 4427 124 32 1 chrY 10309709 10310369 -14402710 + L1PB3 LINE L1 5475 6154 0 22 23 0 45 chrY 10310369 10310385 -14402694 + AT_rich Low_complexity Low_complexity 27 42 0 1253 208 104 74 chrY 10310405 10310498 -14402581 + MLT2C2 LTR ERVL 1 90 -374 1316 212 13 33 chrY 10310498 10310804 -14402275 - AluJo SINE Alu -12 300 1 1253 208 104 74 chrY 10310804 10311113 -14401966 + MLT2C2 LTR ERVL 90 415 -49 489 232 6 17 chrY 10311244 10311425 -14401654 + (TATATG)n Simple_repeat Simple_repeat 2 180 0 201 171 0 0 chrY 10311428 10311463 -14401616 + (TA)n Simple_repeat Simple_repeat 2 36 0 1297 128 45 16 chrY 10311464 10311706 -14401373 - L1MA2 LINE L1 -126 6178 5930 193 164 0 33 chrY 10311756 10311817 -14401262 + (CAGAGA)n Simple_repeat Simple_repeat 2 60 0 3184 110 38 0 chrY 10313183 10313636 -14399443 - L1PA13 LINE L1 0 6163 5694 1383 216 7 14 chrY 10314770 10315061 -14398018 + AluJb SINE Alu 5 293 -19 499 221 8 16 chrY 10315311 10315438 -14397641 - L1MB2 LINE L1 -2 6169 6044 320 150 0 0 chrY 10315438 10315489 -14397590 - L1PA15 LINE L1 0 6165 6106 1675 171 72 41 chrY 10315490 10315852 -14397227 + THE1C LTR MaLR 1 373 -2 20942 91 5 2 chrY 10315852 10318587 -14394492 - HERVK11 LTR ERVK -111 7842 5100 * 21133 106 1 12 chrY 10318577 10321473 -14391606 - HERVK11 LTR ERVK -5082 2871 6 3436 104 27 12 chrY 10321480 10322410 -14390669 - MER11A LTR ERVK 0 1266 1 259 314 5 70 chrY 10322505 10322690 -14390389 + L1MEd LINE L1 588 760 -5359 * 338 279 99 55 chrY 10322678 10323262 -14389817 + L1MEd LINE L1 646 1255 -4864 410 114 13 0 chrY 10323402 10323481 -14389598 + (TA)n Simple_repeat Simple_repeat 2 81 0 189 0 0 0 chrY 10323481 10323502 -14389577 + (GA)n Simple_repeat Simple_repeat 2 22 0 359 250 120 41 chrY 10323600 10323851 -14389228 + L1ME LINE L1 5337 5606 -572 385 150 39 39 chrY 10324095 10324275 -14388804 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 460 138 46 26 chrY 10324328 10324596 -14388483 + (TCTA)n Simple_repeat Simple_repeat 1 273 0 224 119 0 24 chrY 10325622 10325664 -14387415 + (TG)n Simple_repeat Simple_repeat 2 42 0 204 257 0 0 chrY 10325694 10325764 -14387315 + (TA)n Simple_repeat Simple_repeat 1 70 0 476 108 22 65 chrY 10325780 10325965 -14387114 + (TAGA)n Simple_repeat Simple_repeat 4 180 0 435 285 63 36 chrY 10326026 10326247 -14386832 - MIR SINE MIR -34 228 2 42903 58 2 2 chrY 10327021 10333011 -14380068 - L1PA3 LINE L1 -3 6152 9 269 279 0 0 chrY 10333243 10333304 -14379775 - LTR16A1 LTR ERVL -5 452 392 21 0 0 0 chrY 10334359 10334380 -14378699 + AT_rich Low_complexity Low_complexity 1 21 0 2011 156 0 0 chrY 10335040 10335382 -14377697 - AluSx SINE Alu 0 346 5 2073 143 0 0 chrY 10335570 10335870 -14377209 + AluY SINE Alu 1 300 -11 2054 195 3 3 chrY 10335932 10336321 -14376758 - MLT1B LTR MaLR 0 390 2 3740 191 47 26 chrY 10336408 10337283 -14375796 + L1MC1 LINE L1 5433 6325 -8 1618 179 7 4 chrY 10337283 10337592 -14375487 + AluSc SINE Alu 1 310 0 1690 194 3 0 chrY 10337600 10337888 -14375191 + AluSx SINE Alu 2 290 -22 2049 193 39 7 chrY 10338132 10338547 -14374532 + MSTA LTR MaLR 1 428 0 1357 269 96 18 chrY 10338867 10339723 -14373356 - Charlie1a DNA MER1_type -480 975 2 1778 174 7 0 chrY 10340238 10340520 -14372559 + AluSx SINE Alu 11 294 -18 1793 172 0 10 chrY 10341324 10341620 -14371459 - AluSx SINE Alu -5 307 15 925 265 97 89 chrY 10341797 10342434 -14370645 + MER20B DNA MER1_type 2 643 -140 203 224 112 71 chrY 10342436 10342534 -14370545 + MIR SINE MIR 161 262 0 333 0 0 0 chrY 10343389 10343426 -14369653 + (TG)n Simple_repeat Simple_repeat 2 38 0 330 65 0 0 chrY 10343932 10343978 -14369101 - MADE1 DNA Mariner -34 46 1 22 0 0 0 chrY 10344647 10344669 -14368410 + AT_rich Low_complexity Low_complexity 1 22 0 1066 206 46 21 chrY 10344836 10344992 -14368087 - AluJo SINE Alu -28 284 118 465 19 0 0 chrY 10344992 10345046 -14368033 + (TTTA)n Simple_repeat Simple_repeat 2 55 0 1066 206 46 21 chrY 10345046 10345127 -14367952 - AluJo SINE Alu -194 118 41 1313 188 61 11 chrY 10345169 10345446 -14367633 + AluJo SINE Alu 1 291 -21 831 187 8 0 chrY 10345468 10345602 -14367477 + FRAM SINE Alu 18 152 -24 484 342 82 31 chrY 10347157 10347581 -14365498 + L1MEd LINE L1 374 819 -5300 228 294 0 15 chrY 10347694 10347762 -14365317 - AluJ/FLAM SINE Alu -235 67 1 411 184 11 11 chrY 10347813 10347900 -14365179 + FLAM SINE Alu 47 133 -10 214 191 16 16 chrY 10347906 10347969 -14365110 + (CAAA)n Simple_repeat Simple_repeat 4 66 0 377 236 54 34 chrY 10348002 10348150 -14364929 + L1MEd LINE L1 938 1088 -5031 1067 224 192 0 chrY 10348168 10348423 -14364656 + AluSx SINE Alu 1 304 -8 275 280 9 37 chrY 10348694 10348801 -14364278 + HAL1 LINE L1 1500 1603 -904 2244 118 0 0 chrY 10349796 10350093 -14362986 + AluY SINE Alu 1 297 -14 8400 55 7 14 chrY 10351266 10352343 -14360736 - MER11C LTR ERVK -2 1069 1 422 280 140 6 chrY 10352343 10352500 -14360579 - MIR SINE MIR -83 179 2 527 282 94 11 chrY 10353232 10353413 -14359666 + MER58A DNA MER1_type 29 224 0 456 116 0 0 chrY 10353789 10353858 -14359221 - L1MA8 LINE L1 -336 5976 5908 * 742 187 129 72 chrY 10353840 10353979 -14359100 + L1MA8 LINE L1 5988 6118 -173 2632 153 9 0 chrY 10353979 10354405 -14358674 + MER57B LTR ERV1 1 430 -4 742 187 129 72 chrY 10354405 10354543 -14358536 + L1MA8 LINE L1 6118 6281 -10 1333 205 8 4 chrY 10355539 10355798 -14357281 + AluSx SINE Alu 1 260 -52 432 0 0 0 chrY 10355813 10355861 -14357218 + (TAAA)n Simple_repeat Simple_repeat 4 51 0 34 24 0 0 chrY 10356671 10356712 -14356367 + AT_rich Low_complexity Low_complexity 1 41 0 405 198 0 0 chrY 10356768 10356859 -14356220 + CT-rich Low_complexity Low_complexity 2 92 0 563 329 98 44 chrY 10357032 10357086 -14355993 + L1M4 LINE L1 4711 4761 -1385 1926 157 3 0 chrY 10357086 10357386 -14355693 + AluSx SINE Alu 6 306 -6 563 329 98 44 chrY 10357386 10357956 -14355123 + L1M4 LINE L1 4757 5370 -772 1695 116 14 0 chrY 10357956 10358231 -14354848 + L1PA13 LINE L1 5878 6156 -7 227 250 0 0 chrY 10358258 10358310 -14354769 + L1M LINE L1 5372 5423 -2385 3203 120 4 4 chrY 10358956 10359441 -14353638 - LTR19A LTR ERV1 -1 485 1 30 59 0 0 chrY 10359761 10359812 -14353267 + AT_rich Low_complexity Low_complexity 1 51 0 2104 157 0 0 chrY 10359886 10360192 -14352887 + AluSx SINE Alu 1 306 -6 2614 264 70 23 chrY 10360820 10361940 -14351139 - L1M4 LINE L1 -1302 4844 3673 700 289 62 17 chrY 10361952 10362308 -14350771 - L1MCa LINE L1 -4418 1978 1607 821 133 29 11 chrY 10362315 10362933 -14350146 + (TA)n Simple_repeat Simple_repeat 1 629 0 659 296 57 26 chrY 10362971 10363413 -14349666 - L1MCa LINE L1 -4822 1574 979 1633 170 25 0 chrY 10363441 10363717 -14349362 - AluSx SINE Alu -25 287 5 962 291 69 87 chrY 10363736 10364530 -14348549 - L1MCa LINE L1 -5589 807 28 534 340 20 0 chrY 10364754 10364951 -14348128 + MIR SINE MIR 37 237 -25 840 232 11 5 chrY 10365855 10366045 -14347034 - AluJo SINE Alu -76 236 46 828 267 34 27 chrY 10366766 10367062 -14346017 - MLT1D LTR MaLR -2 503 206 1972 145 42 28 chrY 10367768 10368127 -14344952 + THE1B LTR MaLR 1 364 0 653 228 20 30 chrY 10368676 10368873 -14344206 - L1MC3 LINE L1 -110 7675 7481 3968 132 15 130 chrY 10368873 10370426 -14342653 + pTR5 LTR ERV1 744 2606 0 1149 205 21 35 chrY 10370427 10370710 -14342369 - L1MC3 LINE L1 -301 7484 7206 3521 169 13 32 chrY 10371156 10371849 -14341230 + L1PA16 LINE L1 5465 6144 -22 22 35 0 0 chrY 10371849 10371878 -14341201 + AT_rich Low_complexity Low_complexity 1 29 0 544 253 6 24 chrY 10372339 10372497 -14340582 + MLT2C2 LTR ERVL 6 160 -304 1591 198 26 26 chrY 10372497 10372840 -14340239 - MLT1A1 LTR MaLR 0 365 23 776 235 119 25 chrY 10372865 10373157 -14339922 + MLT2C2 LTR ERVL 161 513 -2 1502 216 0 4 chrY 10373375 10373648 -14339431 + AluJb SINE Alu 12 283 -29 822 115 14 14 chrY 10373648 10373796 -14339283 + (GGAA)n Simple_repeat Simple_repeat 1 148 0 1240 207 50 23 chrY 10374224 10374585 -14338494 + AluJb SINE Alu 1 369 0 23 78 0 0 chrY 10375496 10375547 -14337532 + AT_rich Low_complexity Low_complexity 1 51 0 1927 230 92 30 chrY 10375886 10376546 -14336533 + L1MB8 LINE L1 4023 4723 -1423 1562 216 31 34 chrY 10376527 10376943 -14336136 + L1MB8 LINE L1 5727 6141 -37 * 2467 213 50 9 chrY 10377252 10377777 -14335302 - MER41C LTR ERV1 -8 546 1 2455 152 0 81 chrY 10378218 10378712 -14334367 + LTR8 LTR ERV1 1 454 -237 1747 130 60 23 chrY 10378712 10379013 -14334066 + MER61E LTR ERV1 1 312 -257 849 146 20 46 chrY 10379029 10379180 -14333899 + LTR8 LTR ERV1 545 691 0 284 255 0 2 chrY 10379465 10379537 -14333542 - L1MD3 LINE L1 -516 7479 7314 1319 103 3 201 chrY 10379538 10379850 -14333229 - MLT2A2 LTR ERVL -4 449 201 471 105 0 0 chrY 10379850 10379926 -14333153 - MLT2A1 LTR ERVL 0 444 369 33 56 0 0 chrY 10379926 10379980 -14333099 + AT_rich Low_complexity Low_complexity 1 54 0 2589 112 5 23 chrY 10379980 10380374 -14332705 - MLT2A1 LTR ERVL -46 398 12 1203 288 113 21 chrY 10380385 10380730 -14332349 - L1MC4 LINE L1 -994 7048 6635 2627 180 52 38 chrY 10380730 10381342 -14331737 - LTR29 LTR ERV1 -1 621 1 1203 288 113 21 chrY 10381342 10381528 -14331551 - L1MC4 LINE L1 -1407 6635 6468 1679 197 0 7 chrY 10381620 10381919 -14331160 - AluSx SINE Alu -15 297 1 674 233 38 13 chrY 10382122 10382281 -14330798 - AluJb SINE Alu -147 165 3 760 293 72 26 chrY 10382299 10382647 -14330432 + MLT1A1 LTR MaLR 2 365 0 2257 134 13 15 chrY 10382790 10383185 -14329894 + L1PA10 LINE L1 5764 6157 -11 24 53 0 0 chrY 10383186 10383224 -14329855 + AT_rich Low_complexity Low_complexity 1 38 0 4643 117 9 1 chrY 10383786 10384471 -14328608 + LTR8 LTR ERV1 2 691 0 1088 226 23 53 chrY 10384519 10384865 -14328214 + MLT1A1 LTR MaLR 9 361 -13 189 281 104 21 chrY 10385564 10385660 -14327419 + MIR SINE MIR 105 208 -54 198 0 0 0 chrY 10387262 10387284 -14325795 + (TA)n Simple_repeat Simple_repeat 1 22 0 1326 219 14 3 chrY 10387501 10387789 -14325290 + AluJo SINE Alu 1 291 -21 454 317 28 7 chrY 10388696 10388841 -14324238 - MIR SINE MIR -69 193 46 1373 206 7 36 chrY 10388896 10389197 -14323882 + AluJo SINE Alu 1 292 -10 36 0 0 0 chrY 10390458 10390494 -14322585 + AT_rich Low_complexity Low_complexity 1 36 0 258 214 80 36 chrY 10391092 10391204 -14321875 + LTR37A LTR ERV1 50 166 -260 298 287 10 0 chrY 10391390 10391491 -14321588 + LTR37A LTR ERV1 314 415 -11 339 318 39 0 chrY 10391500 10391629 -14321450 + L1MCc LINE L1 337 470 -5953 367 220 42 4 chrY 10391629 10391733 -14321346 + AluJ/FLAM SINE Alu 2 98 -204 894 132 7 59 chrY 10391733 10391885 -14321194 + AluJo/FRAM SINE Alu 157 300 -12 1568 174 8 4 chrY 10391913 10392178 -14320901 + AluSc SINE Alu 34 299 -10 1836 193 41 32 chrY 10392266 10392800 -14320279 + MLT2A2 LTR ERVL 4 554 0 379 337 61 61 chrY 10392915 10393325 -14319754 + L1MCc LINE L1 658 1067 -5356 37 39 0 0 chrY 10393362 10393413 -14319666 + AT_rich Low_complexity Low_complexity 1 51 0 541 60 12 12 chrY 10393414 10393497 -14319582 + (TAGA)n Simple_repeat Simple_repeat 2 84 0 918 177 10 61 chrY 10393497 10393695 -14319384 - AluJo SINE Alu -38 274 87 225 209 0 0 chrY 10393701 10393744 -14319335 + MER45 DNA AcHobo 1515 1557 -24 816 262 86 25 chrY 10393815 10394174 -14318905 + Charlie1b DNA MER1_type 1 381 -142 221 250 58 0 chrY 10394916 10394968 -14318111 - MER5A DNA MER1_type -72 117 63 348 236 11 0 chrY 10394984 10395073 -14318006 - L1MA4A LINE L1 -23 6280 6191 1535 205 36 3 chrY 10395081 10395466 -14317613 - L1MA4A LINE L1 -183 6120 5723 1133 211 9 5 chrY 10395468 10395686 -14317393 - AluSx SINE Alu -93 219 1 219 277 15 15 chrY 10395769 10395834 -14317245 - MER5A DNA MER1_type -114 75 11 232 211 70 0 chrY 10395886 10395943 -14317136 - MLT1J2 LTR MaLR -389 61 1 24 0 0 0 chrY 10396973 10396997 -14316082 + AT_rich Low_complexity Low_complexity 1 24 0 1865 173 0 3 chrY 10397687 10397982 -14315097 + AluSg SINE Alu 3 296 -14 1299 225 17 33 chrY 10398134 10398436 -14314643 + AluJo SINE Alu 3 299 -13 2288 149 6 3 chrY 10398772 10399135 -14313944 + THE1B LTR MaLR 1 364 0 254 320 98 13 chrY 10399316 10399541 -14313538 - Tigger8 DNA MER2_type -18 648 405 28 48 0 0 chrY 10399555 10399597 -14313482 + AT_rich Low_complexity Low_complexity 1 42 0 215 324 9 0 chrY 10399904 10400012 -14313067 + (TA)n Simple_repeat Simple_repeat 1 109 0 261 278 174 26 chrY 10400174 10400289 -14312790 + MIR SINE MIR 63 194 -68 21 57 0 0 chrY 10400568 10400603 -14312476 + AT_rich Low_complexity Low_complexity 1 35 0 1703 165 48 31 chrY 10400815 10401173 -14311906 + THE1B LTR MaLR 1 364 0 941 274 69 34 chrY 10401625 10401734 -14311345 + MLT1E LTR MaLR 171 275 -318 11861 124 17 3 chrY 10401734 10402017 -14311062 + L1PA7 LINE L1 3419 3697 -2457 243 0 0 0 chrY 10402017 10402044 -14311035 + (CA)n Simple_repeat Simple_repeat 2 28 0 11861 124 17 3 chrY 10402044 10404485 -14308594 + L1PA7 LINE L1 3697 6154 0 941 274 69 34 chrY 10404485 10404754 -14308325 + MLT1E LTR MaLR 275 562 -31 199 176 39 20 chrY 10405580 10405631 -14307448 - L2 LINE L2 -2 3270 3219 1829 135 4 9 chrY 10406505 10406904 -14306175 + LTR7 LTR ERV1 1 448 -2 1352 214 91 22 chrY 10409616 10409980 -14303099 + MLT1B LTR MaLR 1 389 -1 231 150 0 0 chrY 10410301 10410341 -14302738 - MLT2C1 LTR ERVL 0 397 358 1056 171 0 0 chrY 10410372 10410536 -14302543 + AluJb SINE Alu 134 297 -15 200 145 40 13 chrY 10410569 10410645 -14302434 + (TA)n Simple_repeat Simple_repeat 1 78 0 278 120 86 63 chrY 10410814 10410989 -14302090 + (TA)n Simple_repeat Simple_repeat 2 180 0 1210 232 30 16 chrY 10411026 10411364 -14301715 - MLT2C1 LTR ERVL -35 429 18 420 202 12 0 chrY 10411364 10411448 -14301631 + MLT1B LTR MaLR 3 87 -303 1088 203 105 35 chrY 10411455 10411598 -14301481 + MER2 DNA MER2_type 8 140 -205 1518 221 18 32 chrY 10411598 10411938 -14301141 + MER1B DNA MER1_type 3 337 0 1088 203 105 35 chrY 10411938 10412109 -14300970 + MER2 DNA MER2_type 140 344 -1 * 1439 195 10 10 chrY 10412109 10412200 -14300879 + MLT1B LTR MaLR 87 177 -213 2343 50 40 0 chrY 10412200 10412497 -14300582 + AluY SINE Alu 1 309 -2 1439 195 10 10 chrY 10412497 10412706 -14300373 + MLT1B LTR MaLR 176 387 -3 23 33 0 0 chrY 10412849 10412879 -14300200 + AT_rich Low_complexity Low_complexity 1 30 0 369 0 0 0 chrY 10412995 10413036 -14300043 + (TTTA)n Simple_repeat Simple_repeat 3 43 0 1426 112 0 0 chrY 10413036 10413241 -14299838 - L1PA7 LINE L1 -13 6141 5937 299 276 37 70 chrY 10413264 10413536 -14299543 + L1MC/D LINE L1 5557 5819 -1989 1280 248 34 39 chrY 10414609 10415016 -14298063 + MLT1C LTR MaLR 3 407 -60 24 77 0 0 chrY 10415374 10415426 -14297653 + AT_rich Low_complexity Low_complexity 1 52 0 1233 152 31 5 chrY 10415426 10415650 -14297429 - L1PA16 LINE L1 -9 6157 5928 1303 165 4 4 chrY 10415650 10415893 -14297186 + L1PA16 LINE L1 5677 5919 -247 2081 144 55 27 chrY 10416228 10416666 -14296413 - LTR7 LTR ERV1 0 450 1 418 285 33 23 chrY 10416768 10416982 -14296097 + LTR16B LTR ERVL 5 220 -244 646 154 0 0 chrY 10417106 10417216 -14295863 - L1PA16 LINE L1 -330 5836 5727 * 3011 111 6 0 chrY 10417202 10417670 -14295409 - L1P LINE L1 -1835 4311 3841 22 35 0 0 chrY 10417915 10417944 -14295135 + AT_rich Low_complexity Low_complexity 1 29 0 1629 149 0 71 chrY 10418098 10418393 -14294686 + AluSg SINE Alu 1 274 -36 312 158 0 0 chrY 10418394 10418451 -14294628 + (CACAA)n Simple_repeat Simple_repeat 4 60 0 336 340 51 6 chrY 10418469 10418625 -14294454 - MIR3 SINE MIR -2 206 44 192 40 0 0 chrY 10418645 10418670 -14294409 + (TG)n Simple_repeat Simple_repeat 2 26 0 946 204 98 129 chrY 10418850 10419383 -14293696 + MLT1E1 LTR MaLR 139 654 0 2719 20 0 0 chrY 10419670 10419975 -14293104 + AluYb8 SINE Alu 1 305 -13 1173 281 109 29 chrY 10420801 10421350 -14291729 - MLT1E LTR MaLR 0 593 1 381 280 102 27 chrY 10421421 10421646 -14291433 - MLT1E1 LTR MaLR -412 242 1 1880 158 7 0 chrY 10422578 10422870 -14290209 - AluSg SINE Alu -2 308 15 386 84 72 0 chrY 10422936 10423019 -14290060 + (TATAG)n Simple_repeat Simple_repeat 2 90 0 249 108 0 0 chrY 10423015 10423052 -14290027 + (TA)n Simple_repeat Simple_repeat 2 38 0 * 481 196 8 7 chrY 10423400 10423518 -14289561 + L1PA16 LINE L1 6051 6165 0 1877 172 0 3 chrY 10425004 10425301 -14287778 - AluSc SINE Alu -13 296 1 627 311 73 16 chrY 10425802 10426117 -14286962 - MER58B DNA MER1_type 0 341 9 1357 207 33 33 chrY 10426274 10426574 -14286505 + AluJo SINE Alu 5 304 -8 492 111 0 0 chrY 10426590 10426671 -14286408 + (GGAA)n Simple_repeat Simple_repeat 4 84 0 215 196 39 0 chrY 10426679 10426730 -14286349 + GA-rich Low_complexity Low_complexity 2 54 0 1538 212 3 16 chrY 10427465 10427781 -14285298 + AluJb SINE Alu 1 312 0 2029 126 0 20 chrY 10427792 10428094 -14284985 + AluSg1 SINE Alu 12 307 -2 24 67 0 0 chrY 10428132 10428177 -14284902 + AT_rich Low_complexity Low_complexity 1 45 0 438 70 0 0 chrY 10428629 10428686 -14284393 - Alu SINE Alu -253 57 1 1538 211 0 17 chrY 10429769 10430067 -14283012 - AluJo SINE Alu -19 293 1 2906 0 0 0 chrY 10430404 10430715 -14282364 + AluYa5 SINE Alu 1 311 0 315 0 0 0 chrY 10430715 10430750 -14282329 + (TA)n Simple_repeat Simple_repeat 1 35 0 23 0 0 0 chrY 10431572 10431595 -14281484 + AT_rich Low_complexity Low_complexity 1 23 0 1920 159 23 3 chrY 10431712 10432014 -14281065 - AluSx SINE Alu -4 308 1 1159 170 41 32 chrY 10432179 10432544 -14280535 - L1P4 LINE L1 -686 5480 5096 714 279 37 0 chrY 10433086 10433418 -14279661 - MER63 DNA MER1_type -75 986 9 1529 216 0 3 chrY 10433487 10433792 -14279287 - AluJo SINE Alu -8 304 1 2143 128 0 3 chrY 10434320 10434616 -14278463 + AluSx SINE Alu 1 295 -17 3420 119 221 14 chrY 10434641 10435211 -14277868 - LTR12 LTR ERV1 0 688 1 189 121 0 0 chrY 10435526 10435559 -14277520 + (TG)n Simple_repeat Simple_repeat 1 33 0 213 268 0 28 chrY 10435563 10435634 -14277445 + CT-rich Low_complexity Low_complexity 2 70 0 1374 202 26 23 chrY 10435679 10435981 -14277098 + AluSq SINE Alu 1 303 0 183 42 0 0 chrY 10436564 10436588 -14276491 + (TG)n Simple_repeat Simple_repeat 2 25 0 1493 167 70 0 chrY 10436622 10436879 -14276200 + AluSx SINE Alu 2 276 -36 228 67 0 0 chrY 10436888 10436918 -14276161 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1692 147 7 32 chrY 10436959 10437268 -14275811 - AluSq SINE Alu 0 306 5 297 0 0 0 chrY 10437758 10437791 -14275288 + (TG)n Simple_repeat Simple_repeat 1 33 0 215 150 25 0 chrY 10437793 10437833 -14275246 + GA-rich Low_complexity Low_complexity 2 42 0 22 70 0 0 chrY 10437871 10437914 -14275165 + AT_rich Low_complexity Low_complexity 1 43 0 302 206 76 0 chrY 10438411 10438503 -14274576 + L1MB3 LINE L1 6085 6183 0 1748 188 0 10 chrY 10438509 10438813 -14274266 + AluSx SINE Alu 1 301 -11 227 342 50 0 chrY 10439211 10439331 -14273748 + MER20B DNA MER1_type 25 150 -633 194 81 27 0 chrY 10439430 10439467 -14273612 + (TTTTTG)n Simple_repeat Simple_repeat 2 39 0 1024 233 5 22 chrY 10439498 10439721 -14273358 + MER20 DNA MER1_type 1 219 0 664 321 27 57 chrY 10440204 10440503 -14272576 - MLT1E LTR MaLR -24 569 280 321 262 90 55 chrY 10440696 10440841 -14272238 - MLT1E LTR MaLR -347 246 97 1685 203 0 7 chrY 10440892 10441188 -14271891 + AluSx SINE Alu 1 294 -18 237 139 0 0 chrY 10441210 10441253 -14271826 + (TC)n Simple_repeat Simple_repeat 2 44 0 1247 214 11 22 chrY 10441299 10441574 -14271505 - AluJo SINE Alu -38 274 3 189 0 0 0 chrY 10441667 10441688 -14271391 + (CA)n Simple_repeat Simple_repeat 2 22 0 1044 178 5 25 chrY 10441706 10441903 -14271176 - AluSq SINE Alu 0 313 121 32 0 0 0 chrY 10442203 10442235 -14270844 + AT_rich Low_complexity Low_complexity 1 32 0 2493 183 41 71 chrY 10442285 10442497 -14270582 - L1MC3 LINE L1 -471 7314 7097 2446 169 36 7 chrY 10442497 10442911 -14270168 - MSTA LTR MaLR -2 426 1 2493 183 41 71 chrY 10442911 10443360 -14269719 - L1MC3 LINE L1 -688 7097 6673 2530 112 46 3 chrY 10443573 10443920 -14269159 + THE1B LTR MaLR 1 362 -2 937 269 123 6 chrY 10444388 10444712 -14268367 + MLT1A1 LTR MaLR 2 363 -2 286 159 200 106 chrY 10445022 10445058 -14268021 - MER53 DNA DNA 0 189 158 1619 207 3 10 chrY 10445058 10445358 -14267721 - AluSx SINE Alu -14 298 1 286 159 200 106 chrY 10445358 10445491 -14267588 - MER53 DNA DNA -31 158 4 258 180 36 36 chrY 10445701 10445840 -14267239 + (TTA)n Simple_repeat Simple_repeat 1 139 0 1123 256 114 29 chrY 10445973 10446394 -14266685 + MLT1C LTR MaLR 11 467 0 3943 143 88 71 chrY 10446480 10447438 -14265641 + pTR5 LTR ERV1 745 2025 -413 265 265 31 20 chrY 10447438 10447536 -14265543 + LTR30 LTR ERV1 544 642 -80 36275 101 8 7 chrY 10447539 10452718 -14260361 + Harlequin LTR ERV1 1 4979 -1975 679 139 224 0 chrY 10452686 10452931 -14260148 + Harlequin LTR ERV1 840 1139 -5757 * 6138 124 39 49 chrY 10452987 10454602 -14258477 + pTR5 LTR ERV1 494 8399 0 334 224 31 20 chrY 10454602 10454700 -14258379 + LTR30 LTR ERV1 544 642 -80 1185 119 97 0 chrY 10454701 10454886 -14258193 + LTR12 LTR ERV1 377 579 -135 297 161 0 36 chrY 10454886 10454942 -14258137 + FLAM_A SINE Alu 65 114 -19 402 154 0 0 chrY 10454960 10455025 -14258054 - MADE1 DNA Mariner -14 66 2 777 177 16 8 chrY 10455025 10455149 -14257930 + AluJo SINE Alu 118 242 -70 234 125 0 0 chrY 10455170 10455218 -14257861 + (CAAAA)n Simple_repeat Simple_repeat 3 50 0 263 291 38 0 chrY 10455456 10455535 -14257544 - MLT1K LTR MaLR -348 240 159 277 305 0 93 chrY 10455649 10455767 -14257312 - MER5A DNA MER1_type -72 117 11 293 230 0 17 chrY 10456470 10456644 -14256435 + (TA)n Simple_repeat Simple_repeat 1 171 0 495 87 0 0 chrY 10456779 10456848 -14256231 + (TA)n Simple_repeat Simple_repeat 1 69 0 240 211 44 0 chrY 10457719 10457809 -14255270 + (TA)n Simple_repeat Simple_repeat 2 95 0 1587 140 34 0 chrY 10458204 10458439 -14254640 + AluSc SINE Alu 56 298 -11 181 309 31 41 chrY 10459497 10459594 -14253485 + MER5B DNA MER1_type 54 149 -29 1426 212 28 0 chrY 10460547 10460835 -14252244 - AluJb SINE Alu -16 296 1 34 24 0 0 chrY 10460835 10460876 -14252203 + AT_rich Low_complexity Low_complexity 1 41 0 284 115 49 0 chrY 10461073 10461134 -14251945 + C-rich Low_complexity Low_complexity 3 66 0 183 184 0 0 chrY 10461151 10461189 -14251890 + CT-rich Low_complexity Low_complexity 1 38 0 253 333 25 58 chrY 10461214 10461457 -14251622 + L2 LINE L2 2611 2845 -469 225 220 0 17 chrY 10461931 10461990 -14251089 + (TA)n Simple_repeat Simple_repeat 2 59 0 210 250 127 98 chrY 10462173 10462409 -14250670 - MIR SINE MIR -19 243 1 287 287 190 29 chrY 10462624 10462798 -14250281 - MIR SINE MIR -60 202 1 180 194 28 0 chrY 10463015 10463051 -14250028 - L3 LINE CR1 -886 691 655 26 50 0 0 chrY 10464042 10464082 -14248997 + AT_rich Low_complexity Low_complexity 1 40 0 209 238 0 0 chrY 10464365 10464407 -14248672 + (TA)n Simple_repeat Simple_repeat 2 43 0 216 200 0 0 chrY 10464421 10464466 -14248613 + (CA)n Simple_repeat Simple_repeat 2 46 0 188 0 74 0 chrY 10466601 10466628 -14246451 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 294 73 0 0 chrY 10467389 10467430 -14245649 + (TG)n Simple_repeat Simple_repeat 2 42 0 29 28 0 0 chrY 10469290 10469326 -14243753 + AT_rich Low_complexity Low_complexity 1 36 0 1931 134 31 22 chrY 10469333 10469654 -14243425 - THE1C LTR MaLR -51 324 1 390 173 0 0 chrY 10470906 10470981 -14242098 + (TA)n Simple_repeat Simple_repeat 1 75 0 901 184 66 79 chrY 10471076 10471304 -14241775 + AluJo SINE Alu 88 312 0 29 104 0 0 chrY 10472513 10472619 -14240460 + AT_rich Low_complexity Low_complexity 1 106 0 244 177 99 0 chrY 10472646 10472787 -14240292 + (TA)n Simple_repeat Simple_repeat 1 155 0 181 290 47 75 chrY 10473504 10473611 -14239468 - L2 LINE L2 -1 3271 3168 659 157 13 13 chrY 10473738 10473891 -14239188 + CT-rich Low_complexity Low_complexity 3 155 0 4010 134 14 3 chrY 10474551 10475193 -14237886 - L1PA8 LINE L1 -2 6170 5522 480 18 0 0 chrY 10475167 10475223 -14237856 + L1P LINE L1 5371 5426 -746 * 342 0 0 0 chrY 10475733 10475771 -14237308 + (TG)n Simple_repeat Simple_repeat 2 39 0 2616 51 0 3 chrY 10477200 10477511 -14235568 - AluY SINE Alu -1 310 1 1296 201 36 79 chrY 10477579 10477882 -14235197 + AluJo SINE Alu 1 290 -12 1439 206 70 0 chrY 10478630 10478917 -14234162 + AluSx SINE Alu 1 307 -5 780 200 8 0 chrY 10479736 10479866 -14233213 - FLAM_C SINE Alu -1 132 2 678 218 103 6 chrY 10480080 10480254 -14232825 - L1MD3 LINE L1 -266 7729 7539 318 214 0 0 chrY 10480252 10480322 -14232757 - L1MC3 LINE L1 -756 7029 6960 * 12798 161 18 62 chrY 10480907 10481064 -14232015 + L1PA12 LINE L1 473 635 -6949 225 0 0 0 chrY 10481064 10481089 -14231990 + (TG)n Simple_repeat Simple_repeat 1 25 0 12798 161 18 62 chrY 10481089 10483624 -14229455 + L1PA12 LINE L1 635 4277 -3307 3616 93 18 18 chrY 10483624 10484104 -14228975 + L1PA7 LINE L1 5654 6150 -4 420 244 146 28 chrY 10484105 10484359 -14228720 - L1MC5 LINE L1 -227 7734 7451 651 200 0 9 chrY 10484602 10484717 -14228362 - FRAM SINE Alu -21 155 42 260 156 0 0 chrY 10484801 10484846 -14228233 - MER4-int LTR ERV1 -5439 1159 1115 211 140 0 100 chrY 10485097 10485147 -14227932 - L2 LINE L2 -8 3305 3261 797 201 180 143 chrY 10485657 10485744 -14227335 - MLT1F1 LTR MaLR 0 567 485 12809 47 5 1 chrY 10485744 10488023 -14225056 - L1PA2 LINE L1 0 6155 3871 797 201 180 143 chrY 10488023 10488362 -14224717 - MLT1F1 LTR MaLR -82 485 125 1314 221 4 0 chrY 10489172 10489430 -14223649 + AluJb SINE Alu 42 300 -12 199 0 0 61 chrY 10489438 10489471 -14223608 + (CAAAAA)n Simple_repeat Simple_repeat 3 33 0 225 89 0 125 chrY 10491195 10491251 -14221828 + L1PA8A LINE L1 5683 5731 -400 4779 121 11 3 chrY 10491282 10492009 -14221070 - L1P LINE L1 -3935 2211 1479 * 16247 126 12 3 chrY 10492007 10494531 -14218548 + L1P LINE L1 2240 4789 -1357 315 0 0 0 chrY 10494531 10494566 -14218513 + (TG)n Simple_repeat Simple_repeat 2 36 0 274 188 20 0 chrY 10494586 10494687 -14218392 + (TA)n Simple_repeat Simple_repeat 1 103 0 1298 188 56 43 chrY 10495164 10495467 -14217612 - AluJo SINE Alu -5 307 1 2142 178 17 3 chrY 10496165 10496525 -14216554 - MLT1A1 LTR MaLR 0 365 1 1762 172 3 0 chrY 10496846 10497136 -14215943 + AluSx SINE Alu 12 302 -10 315 324 65 32 chrY 10497305 10497401 -14215678 - MIR SINE MIR -11 251 160 1270 223 153 50 chrY 10497401 10497858 -14215221 - MLT1D LTR MaLR -1 504 1 315 324 65 32 chrY 10497858 10497946 -14215133 - MIR SINE MIR -102 160 61 306 214 0 0 chrY 10497981 10498037 -14215042 - LTR29 LTR ERV1 0 622 567 665 203 0 68 chrY 10498038 10498201 -14214878 - LTR29-int LTR ERV1 -6167 164 13 2690 184 137 2 chrY 10498215 10498763 -14214316 - LTR29 LTR ERV1 0 622 1 231 146 0 0 chrY 10499593 10499634 -14213445 + (CA)n Simple_repeat Simple_repeat 2 42 0 359 172 47 0 chrY 10499645 10499709 -14213370 + MER47A DNA MER2_type 15 81 -285 2003 214 47 11 chrY 10499716 10500184 -14212895 - MER4D LTR ERV1 -26 877 393 2086 178 13 5 chrY 10500351 10500728 -14212351 - MER4D LTR ERV1 -523 380 1 1379 200 28 10 chrY 10500730 10501020 -14212059 + MER47A DNA MER2_type 72 366 0 315 85 0 0 chrY 10501031 10501078 -14212001 + (TG)n Simple_repeat Simple_repeat 2 48 0 260 308 55 22 chrY 10501087 10501178 -14211901 + MIR SINE MIR 89 182 -80 16152 128 15 1 chrY 10502055 10505254 -14207825 - L1PA7 LINE L1 -6 6148 2902 12981 141 22 72 chrY 10505355 10507991 -14205088 + L1P LINE L1 387 2890 -3256 2201 105 16 3 chrY 10508184 10508488 -14204591 - AluSp SINE Alu -3 310 3 1715 186 0 29 chrY 10508489 10508801 -14204278 - AluJb SINE Alu -9 303 1 2002 75 4 0 chrY 10508937 10509190 -14203889 - L1PA4 LINE L1 0 6155 5902 26 30 0 0 chrY 10509718 10509751 -14203328 + AT_rich Low_complexity Low_complexity 1 33 0 23 0 0 0 chrY 10509777 10509800 -14203279 + AT_rich Low_complexity Low_complexity 1 23 0 703 199 32 43 chrY 10509919 10510105 -14202974 - MER39B LTR ERV1 0 653 470 4406 165 38 25 chrY 10510105 10510940 -14202139 - L1PA16 LINE L1 -16 6150 5305 2582 156 48 8 chrY 10510941 10511423 -14201656 - MER39B LTR ERV1 -152 501 1 239 0 32 0 chrY 10511539 10511570 -14201509 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 41319 72 5 1 chrY 10511570 10517689 -14195390 - L1PA4 LINE L1 -11 6144 1 2315 100 0 6 chrY 10518522 10518843 -14194236 - L1P3 LINE L1 -431 5723 5405 2793 94 3 3 chrY 10518843 10519195 -14193884 + L1PA7 LINE L1 5787 6146 -8 225 0 0 0 chrY 10519202 10519227 -14193852 + (CAT)n Simple_repeat Simple_repeat 1 25 0 2025 191 75 10 chrY 10519373 10519775 -14193304 - MSTA LTR MaLR 0 428 1 454 311 59 25 chrY 10519833 10520071 -14193008 + HAL1 LINE L1 1548 1793 -714 1524 206 3 17 chrY 10520390 10520682 -14192397 + AluJb SINE Alu 1 288 -24 180 0 0 0 chrY 10520686 10520706 -14192373 + (CAAA)n Simple_repeat Simple_repeat 3 22 0 318 313 23 30 chrY 10520733 10520864 -14192215 + HAL1 LINE L1 2269 2398 -109 1720 94 4 0 chrY 10520953 10521230 -14191849 + AluY SINE Alu 78 355 0 527 106 6 3 chrY 10521290 10521384 -14191695 - L1P4 LINE L1 -476 5678 5587 484 286 23 35 chrY 10521503 10521674 -14191405 - MER5B DNA MER1_type -6 172 4 1236 213 0 94 chrY 10521721 10522049 -14191030 + AluJb SINE Alu 3 299 -13 811 178 0 0 chrY 10523319 10523448 -14189631 + AluJb SINE Alu 167 295 -17 1098 201 22 18 chrY 10523448 10523677 -14189402 + AluJo SINE Alu 1 230 -82 1391 228 21 0 chrY 10525096 10525386 -14187693 - AluJb SINE Alu -16 296 1 240 276 45 22 chrY 10525639 10525773 -14187306 - Charlie4 DNA MER1_type -20 1941 1805 672 221 0 21 chrY 10525787 10525932 -14187147 + FLAM_C SINE Alu 2 143 0 401 246 8 31 chrY 10526062 10526192 -14186887 - Charlie4 DNA MER1_type -1822 139 13 838 86 94 0 chrY 10526194 10526311 -14186768 + L1MA1 LINE L1 6170 6297 -5 1975 159 0 0 chrY 10527512 10527820 -14185259 + AluSc SINE Alu 1 308 -1 217 274 11 32 chrY 10529130 10529153 -14183926 + (TATATG)n Simple_repeat Simple_repeat 2 24 -70 2199 155 5 50 chrY 10529153 10529534 -14183545 - THE1B LTR MaLR 0 364 1 217 274 11 32 chrY 10529534 10529605 -14183474 + (TATATG)n Simple_repeat Simple_repeat 24 94 0 14557 109 57 51 chrY 10529651 10533325 -14179754 - HERV9 LTR ERV1 0 8399 504 10627 94 9 9 chrY 10533298 10534753 -14178326 - HERV9 LTR ERV1 -2067 6332 4878 15733 115 37 47 chrY 10534753 10539730 -14173349 - HERV9 LTR ERV1 0 2438 30 337 26 0 0 chrY 10539805 10539844 -14173235 - MLT2A2 LTR ERVL -2 451 413 267 31 0 0 chrY 10539845 10539877 -14173202 + (TA)n Simple_repeat Simple_repeat 2 33 0 192 40 0 0 chrY 10539903 10539928 -14173151 + (TG)n Simple_repeat Simple_repeat 2 26 0 267 213 16 8 chrY 10539961 10540088 -14172991 + (TA)n Simple_repeat Simple_repeat 2 129 0 244 257 14 0 chrY 10540120 10540190 -14172889 + (TA)n Simple_repeat Simple_repeat 2 72 0 2506 122 46 3 chrY 10540192 10540584 -14172495 - MLT2A2 LTR ERVL -44 409 1 21 0 0 0 chrY 10541136 10541157 -14171922 + AT_rich Low_complexity Low_complexity 1 21 0 22 99 0 0 chrY 10541362 10541433 -14171646 + AT_rich Low_complexity Low_complexity 1 71 0 1978 175 11 3 chrY 10541688 10542042 -14171037 - L1MA3 LINE L1 -2 6303 5947 1858 151 0 25 chrY 10542051 10542369 -14170710 - AluSg SINE Alu 0 310 1 2015 99 34 24 chrY 10542612 10542904 -14170175 + AluSc SINE Alu 1 295 -14 460 279 137 54 chrY 10543493 10543721 -14169358 - L1ME3A LINE L1 -225 5945 5737 2001 138 16 10 chrY 10543721 10544026 -14169053 + L1PA11 LINE L1 5865 6171 -3 460 279 137 54 chrY 10544026 10544099 -14168980 - L1ME3A LINE L1 -433 5737 5671 299 25 25 0 chrY 10544099 10544139 -14168940 + (TG)n Simple_repeat Simple_repeat 2 42 0 460 279 137 54 chrY 10544139 10544377 -14168702 - L1ME3A LINE L1 -499 5671 5360 1145 214 34 102 chrY 10544961 10545341 -14167738 + MLT1A1 LTR MaLR 3 392 -4 524 248 34 0 chrY 10545715 10545832 -14167247 - FLAM_A SINE Alu -12 121 1 3736 170 50 12 chrY 10545972 10546691 -14166388 - L1PA16 LINE L1 -9 6157 5412 303 161 0 0 chrY 10547772 10547828 -14165251 + (CATATA)n Simple_repeat Simple_repeat 1 56 0 26498 146 12 34 chrY 10548168 10552508 -14160571 - L1PA8 LINE L1 -1 6486 2229 396 59 0 0 chrY 10552508 10552559 -14160520 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 26498 146 12 34 chrY 10552559 10554380 -14158699 - L1PA8 LINE L1 -4258 2229 368 276 100 0 0 chrY 10554380 10554420 -14158659 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 22374 90 13 25 chrY 10554420 10558364 -14154715 - L1PA6 LINE L1 -17 6452 2545 6678 165 45 3 chrY 10558364 10559489 -14153590 - L1PA6 LINE L1 -5283 1178 6 195 100 0 0 chrY 10559520 10559550 -14153529 + (CA)n Simple_repeat Simple_repeat 1 30 0 694 279 14 24 chrY 10559640 10559848 -14153231 + MER20 DNA MER1_type 2 207 -12 2666 181 2 2 chrY 10560690 10561154 -14151925 + L1PA13 LINE L1 5697 6160 -3 239 311 0 14 chrY 10562411 10562485 -14150594 - L2 LINE L2 -1 3312 3240 1283 225 58 7 chrY 10562509 10562785 -14150294 + AluJo SINE Alu 3 292 -10 24 0 0 0 chrY 10563661 10563685 -14149394 + AT_rich Low_complexity Low_complexity 1 24 0 25 31 0 0 chrY 10566301 10566333 -14146746 + AT_rich Low_complexity Low_complexity 1 32 0 195 42 0 0 chrY 10566487 10566511 -14146568 + (TG)n Simple_repeat Simple_repeat 2 25 0 3357 154 41 79 chrY 10567056 10567880 -14145199 - LTR12 LTR ERV1 0 1530 671 1994 107 10 10 chrY 10567880 10568171 -14144908 + AluY SINE Alu 11 301 -10 3357 154 41 79 chrY 10568171 10568814 -14144265 - LTR12 LTR ERV1 -859 671 5 791 185 31 21 chrY 10568870 10569096 -14143983 + AluSx SINE Alu 3 307 -3 1402 193 30 33 chrY 10569747 10570048 -14143031 - AluJb SINE Alu 0 312 13 776 225 28 150 chrY 10571056 10571549 -14141530 + MLT1D LTR MaLR 69 501 -4 723 161 40 8 chrY 10571839 10571963 -14141116 - AluJ SINE Alu -29 283 156 1538 144 39 0 chrY 10572038 10572267 -14140812 - AluSq SINE Alu -20 293 56 691 209 72 0 chrY 10572318 10572457 -14140622 - AluJ SINE Alu -161 151 3 275 296 201 22 chrY 10572859 10573038 -14140041 + MIR SINE MIR 45 255 -7 1763 153 28 7 chrY 10574303 10574591 -14138488 - AluSx SINE Alu -18 294 1 1355 207 11 0 chrY 10575293 10575573 -14137506 + AluJo SINE Alu 22 304 -8 198 91 0 0 chrY 10575632 10575665 -14137414 + (TG)n Simple_repeat Simple_repeat 1 33 0 26 30 0 0 chrY 10576246 10576279 -14136800 + AT_rich Low_complexity Low_complexity 1 33 0 2187 137 0 0 chrY 10576501 10576856 -14136223 - AluSq SINE Alu 0 313 1 21 36 0 0 chrY 10577354 10577382 -14135697 + AT_rich Low_complexity Low_complexity 1 28 0 200 351 0 14 chrY 10577690 10577764 -14135315 - MIR3 SINE MIR -1 207 135 1041 127 13 0 chrY 10578037 10578194 -14134885 + L1PA7 LINE L1 5993 6151 -3 24 0 0 0 chrY 10578422 10578446 -14134633 + AT_rich Low_complexity Low_complexity 1 24 0 216 0 0 0 chrY 10578825 10578849 -14134230 + (TG)n Simple_repeat Simple_repeat 1 24 0 3219 84 2 2 chrY 10579004 10579407 -14133672 - L1PA7 LINE L1 -15 6139 5737 258 148 0 0 chrY 10579590 10579644 -14133435 + (CAT)n Simple_repeat Simple_repeat 2 55 0 607 265 37 16 chrY 10579825 10580014 -14133065 + MLT1C LTR MaLR 1 193 -274 287 292 52 78 chrY 10581903 10582057 -14131022 - MER5A DNA MER1_type -1 188 39 633 240 22 11 chrY 10582099 10582278 -14130801 - Charlie2 DNA MER1_type 0 2862 2682 643 248 53 102 chrY 10582281 10582584 -14130495 + MLT1C LTR MaLR 171 458 -9 1279 308 70 17 chrY 10582831 10583302 -14129777 + MLT1E LTR MaLR 55 550 -43 770 186 0 105 chrY 10583504 10583676 -14129403 + FRAM SINE Alu 1 154 -12 241 253 121 33 chrY 10585326 10585417 -14127662 - L2 LINE L2 -267 3005 2907 795 249 19 24 chrY 10585668 10585873 -14127206 + MER58A DNA MER1_type 21 224 0 478 254 42 17 chrY 10585999 10586117 -14126962 + MER5A DNA MER1_type 63 183 -6 2229 101 10 10 chrY 10586128 10586436 -14126643 - AluY SINE Alu -3 308 1 535 177 7 7 chrY 10586760 10586901 -14126178 + (ATG)n Simple_repeat Simple_repeat 1 141 0 383 200 0 17 chrY 10586932 10587052 -14126027 + (ATG)n Simple_repeat Simple_repeat 3 120 0 186 273 0 0 chrY 10587180 10587224 -14125855 + L2 LINE L2 2325 2368 -946 249 242 15 0 chrY 10587566 10587632 -14125447 + MER20 DNA MER1_type 146 212 -7 181 303 0 66 chrY 10587900 10587976 -14125103 - L2 LINE L2 -559 2755 2685 21 0 0 0 chrY 10588461 10588482 -14124597 + AT_rich Low_complexity Low_complexity 1 21 0 1652 155 64 4 chrY 10589108 10589398 -14123681 + AluSg SINE Alu 1 306 0 21 0 0 0 chrY 10589420 10589441 -14123638 + AT_rich Low_complexity Low_complexity 1 21 0 1319 227 7 26 chrY 10589681 10589985 -14123094 + AluJo SINE Alu 1 298 -4 21 0 0 0 chrY 10590195 10590216 -14122863 + AT_rich Low_complexity Low_complexity 1 21 0 615 217 23 0 chrY 10591170 10591299 -14121780 + FLAM_A SINE Alu 1 132 -1 242 250 0 0 chrY 10591541 10591609 -14121470 - L1 LINE L1 -1140 5006 4939 342 357 63 30 chrY 10592361 10592725 -14120354 - L1 LINE L1 -1713 4433 4058 24 32 0 0 chrY 10593443 10593474 -14119605 + AT_rich Low_complexity Low_complexity 1 31 0 417 298 32 26 chrY 10593538 10593884 -14119195 - L1 LINE L1 -2877 3269 2922 204 200 0 0 chrY 10593968 10594018 -14119061 + (TA)n Simple_repeat Simple_repeat 2 51 0 206 179 18 0 chrY 10594216 10594272 -14118807 + (TG)n Simple_repeat Simple_repeat 1 57 0 1551 151 35 19 chrY 10594376 10594513 -14118566 - AluSx SINE Alu -38 274 130 2034 146 0 0 chrY 10594513 10594814 -14118265 - AluSx SINE Alu -11 301 1 1551 151 35 19 chrY 10594814 10594935 -14118144 - AluSx SINE Alu -182 130 12 226 245 157 75 chrY 10595965 10596124 -14116955 - HAL1 LINE L1 -890 1617 1446 679 150 0 0 chrY 10596829 10596929 -14116150 + AluS SINE Alu 1 100 -212 23 54 0 0 chrY 10597068 10597105 -14115974 + AT_rich Low_complexity Low_complexity 1 37 0 1661 181 3 7 chrY 10597270 10597573 -14115506 + AluSx SINE Alu 1 302 -10 22 88 0 0 chrY 10597964 10598021 -14115058 + AT_rich Low_complexity Low_complexity 1 57 0 2098 236 30 14 chrY 10598022 10598599 -14114480 - L1MC3 LINE L1 -1 7784 7199 228 268 71 31 chrY 10598600 10598727 -14114352 - MLT1F1 LTR MaLR -424 143 12 412 239 34 0 chrY 10598727 10598844 -14114235 - L1MC3 LINE L1 -714 7071 6951 317 216 0 27 chrY 10598853 10598927 -14114152 - FLAM SINE Alu -6 127 63 463 243 79 36 chrY 10598969 10599109 -14113970 - L1PA16 LINE L1 -14 6152 6007 1012 196 144 88 chrY 10599436 10599510 -14113569 - MLT1A1 LTR MaLR -5 360 292 1494 201 0 31 chrY 10599510 10599798 -14113281 - AluJo SINE Alu -22 290 12 1012 196 144 88 chrY 10599798 10600064 -14113015 - MLT1A1 LTR MaLR -73 292 1 861 237 0 21 chrY 10600856 10601046 -14112033 - AluJo SINE Alu -126 186 1 249 366 11 32 chrY 10601148 10601241 -14111838 - L2 LINE L2 -195 3077 2987 1085 193 81 49 chrY 10601351 10601636 -14111443 - AluJb SINE Alu -8 304 11 22 35 0 0 chrY 10601675 10601704 -14111375 + AT_rich Low_complexity Low_complexity 1 29 0 2165 200 11 0 chrY 10602020 10602471 -14110608 + L1PA16 LINE L1 5708 6163 -3 407 98 33 49 chrY 10603211 10603333 -14109746 + (TCTA)n Simple_repeat Simple_repeat 4 123 0 1238 168 16 110 chrY 10603432 10603690 -14109389 - MLT1A1 LTR MaLR -84 281 55 3777 152 8 8 chrY 10603690 10604346 -14108733 - L1MA2 LINE L1 0 6304 5649 1238 168 16 110 chrY 10604346 10604396 -14108683 - MLT1A1 LTR MaLR -310 55 2 1516 156 0 0 chrY 10604559 10604783 -14108296 + AluSg/x SINE Alu 66 289 -21 627 201 224 6 chrY 10606235 10606414 -14106665 + MER20 DNA MER1_type 1 218 -1 28 48 0 0 chrY 10607006 10607048 -14106031 + AT_rich Low_complexity Low_complexity 1 42 0 1399 199 7 21 chrY 10607049 10607330 -14105749 - AluJo SINE Alu -23 289 13 460 275 38 38 chrY 10608065 10608327 -14104752 + L1M4 LINE L1 2288 2549 -3597 275 179 0 13 chrY 10608363 10608441 -14104638 + (CA)n Simple_repeat Simple_repeat 2 78 0 1594 202 137 8 chrY 10609601 10609973 -14103106 - MSTA LTR MaLR 0 428 9 209 128 0 26 chrY 10611354 10611393 -14101686 + (TTTTA)n Simple_repeat Simple_repeat 4 41 0 274 236 139 0 chrY 10611557 10611629 -14101450 + L1ME LINE L1 5625 5706 -415 334 352 0 0 chrY 10611746 10611888 -14101191 + (TA)n Simple_repeat Simple_repeat 2 143 0 1520 204 10 16 chrY 10612213 10612527 -14100552 + AluJo SINE Alu 1 312 0 2131 138 3 0 chrY 10612530 10612841 -14100238 + AluSp SINE Alu 2 313 0 7627 23 0 7 chrY 10613188 10613208 -14099871 + L1PA2 LINE L1 4498 4517 -1638 2317 93 0 3 chrY 10613208 10613519 -14099560 + AluY SINE Alu 2 311 0 7627 23 0 7 chrY 10613519 10615159 -14097920 + L1PA2 LINE L1 4517 6151 -4 243 0 0 0 chrY 10615181 10615208 -14097871 + (TAAAA)n Simple_repeat Simple_repeat 2 28 0 219 69 0 0 chrY 10615291 10615320 -14097759 + (T)n Simple_repeat Simple_repeat 1 29 0 864 199 150 53 chrY 10616552 10616913 -14096166 - MSTD LTR MaLR 0 396 1 358 344 146 29 chrY 10617154 10617841 -14095238 + L2 LINE L2 1715 2481 -833 550 191 68 7 chrY 10618075 10618210 -14094869 - MSTC LTR MaLR -11 417 290 1585 202 3 13 chrY 10618677 10618989 -14094090 - AluJo SINE Alu -2 310 2 1192 213 59 31 chrY 10619826 10619955 -14093124 + AluJo SINE Alu 2 126 -176 1320 192 6 91 chrY 10619955 10620273 -14092806 - AluSx SINE Alu -21 291 1 1192 213 59 31 chrY 10620273 10620430 -14092649 + AluJo SINE Alu 126 296 -6 197 319 42 0 chrY 10621531 10621603 -14091476 - MIR SINE MIR 0 262 188 244 304 111 61 chrY 10621867 10622048 -14091031 - MIR SINE MIR -66 196 7 1932 164 10 34 chrY 10622103 10622487 -14090592 - THE1C LTR MaLR 0 375 1 246 335 97 36 chrY 10622919 10623197 -14089882 - L2 LINE L2 0 3313 3019 1232 223 88 4 chrY 10623685 10623959 -14089120 + AluJo SINE Alu 1 297 -5 2008 196 2 51 chrY 10625261 10625715 -14087364 - MSTB1 LTR MaLR 0 432 1 216 250 0 0 chrY 10626150 10626194 -14086885 + L2 LINE L2 3217 3260 -12 186 211 0 0 chrY 10626547 10626585 -14086494 + MIR SINE MIR 101 138 -70 434 161 97 0 chrY 10627412 10627505 -14085574 - L1MB3 LINE L1 -1 6182 6081 751 195 0 50 chrY 10627901 10628060 -14085019 - AluJo SINE Alu -161 151 1 924 281 111 87 chrY 10628068 10628327 -14084752 - L2 LINE L2 -159 3154 2903 2187 137 36 17 chrY 10628327 10628684 -14084395 - THE1B LTR MaLR 0 364 1 924 281 111 87 chrY 10628684 10629787 -14083292 - L2 LINE L2 -410 2903 1756 33 25 0 0 chrY 10629787 10629827 -14083252 + AT_rich Low_complexity Low_complexity 1 40 0 428 171 85 0 chrY 10629827 10629909 -14083170 + THE1B LTR MaLR 83 171 -193 46 45 0 0 chrY 10629909 10629976 -14083103 + AT_rich Low_complexity Low_complexity 1 67 0 540 350 46 8 chrY 10630059 10630296 -14082783 - MLT1I LTR MaLR -73 336 91 1083 326 67 22 chrY 10630395 10630975 -14082104 - L2 LINE L2 -1657 1657 1052 724 201 24 30 chrY 10633960 10634124 -14078955 - AluJo SINE Alu -149 163 1 1193 239 18 18 chrY 10634404 10634676 -14078403 - AluJo SINE Alu -24 288 17 21 0 0 0 chrY 10634870 10634891 -14078188 + AT_rich Low_complexity Low_complexity 1 21 0 1275 243 15 35 chrY 10636659 10637060 -14076019 - MLT1E3 LTR MaLR 0 624 201 1226 231 59 35 chrY 10637255 10637627 -14075452 - MLT1C LTR MaLR 0 467 87 286 228 0 0 chrY 10637628 10637685 -14075394 + Tigger7 DNA MER2_type 1 57 -676 672 159 106 0 chrY 10637728 10637860 -14075219 + Tigger7 DNA MER2_type 2329 2474 -13 231 118 0 0 chrY 10637877 10637911 -14075168 - MLT1C LTR MaLR -380 87 54 590 60 12 0 chrY 10638147 10638230 -14074849 + (TAGA)n Simple_repeat Simple_repeat 2 85 0 303 235 59 24 chrY 10638278 10638363 -14074716 + L1MC4 LINE L1 6616 6703 -1339 855 169 34 6 chrY 10638378 10638713 -14074366 + (TAGA)n Simple_repeat Simple_repeat 1 344 0 186 222 111 19 chrY 10638844 10638898 -14074181 + L2 LINE L2 3156 3214 -58 293 254 0 0 chrY 10639427 10639486 -14073593 - MLT1D LTR MaLR -169 336 278 1450 194 54 6 chrY 10639757 10640071 -14073008 - L1MA5A LINE L1 -31 6266 5938 1105 144 77 29 chrY 10640183 10640391 -14072688 - MER30 DNA MER1_type -10 220 3 336 248 77 34 chrY 10641607 10641724 -14071355 + MIR SINE MIR 42 163 -99 1376 239 30 27 chrY 10642028 10642154 -14070925 + L1MC3 LINE L1 6743 6867 -918 336 48 0 0 chrY 10642154 10642196 -14070883 + (CA)n Simple_repeat Simple_repeat 1 42 0 1376 239 30 27 chrY 10642196 10642369 -14070710 + L1MC3 LINE L1 6867 7038 -747 1056 224 112 86 chrY 10642369 10642860 -14070219 - MLT1D LTR MaLR 0 505 2 1376 239 30 27 chrY 10642860 10642946 -14070133 + L1MC3 LINE L1 7038 7133 -652 243 0 0 0 chrY 10642946 10642973 -14070106 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1376 239 30 27 chrY 10642973 10642987 -14070092 + L1MC3 LINE L1 7133 7145 -640 574 254 31 0 chrY 10642989 10643119 -14069960 - AluJo SINE Alu -178 134 1 16843 49 3 1 chrY 10643129 10646022 -14067057 - L1PA4 LINE L1 -3 6152 3256 2540 222 26 14 chrY 10646030 10646651 -14066428 + L1MC3 LINE L1 7151 7778 -7 1001 219 6 0 chrY 10647372 10647578 -14065501 - AluSg/x SINE Alu 0 304 98 231 36 0 0 chrY 10647762 10647790 -14065289 + (TA)n Simple_repeat Simple_repeat 2 29 0 273 247 0 0 chrY 10647837 10647918 -14065161 + (TA)n Simple_repeat Simple_repeat 2 82 0 247 196 0 0 chrY 10647923 10647979 -14065100 - L1MC4 LINE L1 -1339 6703 6648 399 41 0 0 chrY 10648050 10648099 -14064980 + (TA)n Simple_repeat Simple_repeat 1 49 0 1043 223 4 0 chrY 10648143 10648372 -14064707 - AluSg/x SINE Alu 0 312 83 883 232 24 40 chrY 10650067 10650317 -14062762 + L1MB7 LINE L1 5929 6174 -10 1804 170 3 3 chrY 10650395 10650689 -14062390 + AluSx SINE Alu 1 294 -18 412 247 50 93 chrY 10651085 10651196 -14061883 + MIR SINE MIR 79 180 -82 1348 199 30 30 chrY 10651196 10651493 -14061586 + AluJo SINE Alu 1 297 -15 412 247 50 93 chrY 10651493 10651563 -14061516 + MIR SINE MIR 180 252 -10 253 302 63 44 chrY 10651677 10651882 -14061197 + L1ME LINE L1 5366 5574 -590 711 335 82 20 chrY 10651926 10652379 -14060700 - MLT1H LTR MaLR 0 549 69 268 267 35 12 chrY 10652504 10652590 -14060489 + Charlie2 DNA MER1_type 43 130 -2652 1793 167 3 3 chrY 10652760 10653054 -14060025 + AluSq SINE Alu 6 299 -14 26 50 0 0 chrY 10654290 10654330 -14058749 + AT_rich Low_complexity Low_complexity 1 40 0 1150 213 76 11 chrY 10654429 10654692 -14058387 - AluSg SINE Alu -20 290 11 23 54 0 0 chrY 10654865 10654902 -14058177 + AT_rich Low_complexity Low_complexity 1 37 0 2152 236 41 78 chrY 10655404 10655541 -14057538 + L1MB3 LINE L1 4590 4730 -1448 5973 90 18 22 chrY 10655541 10656747 -14056332 + L1PA7 LINE L1 4934 6141 -13 2152 236 41 78 chrY 10656747 10656842 -14056237 + L1MB3 LINE L1 4730 4827 -1351 2062 162 46 44 chrY 10656842 10657274 -14055805 - Tigger2a DNA MER2_type 0 434 2 2152 236 41 78 chrY 10657274 10657932 -14055147 + L1MB3 LINE L1 4827 5391 -787 1389 209 3 52 chrY 10657932 10658076 -14055003 + AluSx SINE Alu 1 151 -161 2312 65 0 3 chrY 10658076 10658369 -14054710 + AluY SINE Alu 1 292 -19 1389 209 3 52 chrY 10658369 10658550 -14054529 + AluSx SINE Alu 151 310 -2 2152 236 41 78 chrY 10658550 10659112 -14053967 + L1MB3 LINE L1 5391 5972 -206 222 37 0 0 chrY 10661364 10661391 -14051688 + (TTTTTG)n Simple_repeat Simple_repeat 2 28 0 306 0 0 0 chrY 10662740 10662774 -14050305 + (CA)n Simple_repeat Simple_repeat 2 35 0 2895 3 0 0 chrY 10663550 10663861 -14049218 + AluYa5 SINE Alu 1 311 0 706 248 178 53 chrY 10665344 10665584 -14047495 - MLT1C LTR MaLR 0 467 258 1758 158 12 43 chrY 10665584 10665906 -14047173 - AluSx SINE Alu 0 312 1 706 248 178 53 chrY 10665906 10666076 -14047003 - MLT1C LTR MaLR -209 258 6 1403 214 47 7 chrY 10667767 10668066 -14045013 + AluJb SINE Alu 1 311 -1 205 278 165 43 chrY 10668808 10668923 -14044156 - MIR SINE MIR -56 152 24 223 316 13 13 chrY 10668973 10669052 -14044027 + L2 LINE L2 3189 3267 -46 3002 188 13 80 chrY 10669118 10669905 -14043174 + L1MB3 LINE L1 5450 6183 0 642 201 54 71 chrY 10670045 10670269 -14042810 - L1MB3 LINE L1 -217 5957 5738 616 221 120 23 chrY 10670270 10670487 -14042592 + L1MB3 LINE L1 5946 6183 0 1911 163 0 0 chrY 10671092 10671380 -14041699 + AluSg SINE Alu 1 288 -22 3095 161 12 83 chrY 10671381 10671952 -14041127 - L1PB4 LINE L1 -10 6146 5536 405 0 0 0 chrY 10671952 10671997 -14041082 + (TG)n Simple_repeat Simple_repeat 2 46 0 2042 149 0 0 chrY 10672001 10672297 -14040782 - AluSc SINE Alu -13 296 1 3095 161 12 83 chrY 10672297 10672457 -14040622 - L1PB4 LINE L1 -623 5533 5462 974 238 103 3 chrY 10672910 10673200 -14039879 - LTR48B LTR ERV1 -325 319 1 959 251 132 110 chrY 10674719 10675448 -14037631 - LTR1B LTR ERV1 -81 745 1 2230 152 22 5 chrY 10676186 10676555 -14036524 + THE1C LTR MaLR 1 375 0 2449 105 22 6 chrY 10676555 10676916 -14036163 + THE1C-int LTR MaLR 1 367 -1213 * 3457 160 30 7 chrY 10676909 10677510 -14035569 + THE1C-int LTR MaLR 966 1580 0 2285 144 16 3 chrY 10677511 10677878 -14035201 + THE1C LTR MaLR 2 373 -2 1051 200 85 0 chrY 10678443 10678703 -14034376 + L1MA4 LINE L1 6014 6295 -5 28 29 0 0 chrY 10678822 10678857 -14034222 + AT_rich Low_complexity Low_complexity 1 35 0 27 0 0 0 chrY 10678947 10678974 -14034105 + AT_rich Low_complexity Low_complexity 1 27 0 23 0 0 0 chrY 10679159 10679182 -14033897 + AT_rich Low_complexity Low_complexity 1 23 0 200 333 43 8 chrY 10679220 10679337 -14033742 - MIR SINE MIR -29 233 113 1125 233 0 13 chrY 10680086 10680322 -14032757 - AluJo SINE Alu -31 281 49 1474 280 71 17 chrY 10680322 10680723 -14032356 - MER90 LTR ERV1 -60 554 117 222 37 0 0 chrY 10680723 10680750 -14032329 + (TTA)n Simple_repeat Simple_repeat 2 28 0 1474 280 71 17 chrY 10680750 10680870 -14032209 - MER90 LTR ERV1 -497 117 5 902 128 0 0 chrY 10681876 10682001 -14031078 - AluY SINE Alu -20 291 167 399 228 145 21 chrY 10683310 10683455 -14029624 + MIR SINE MIR 79 241 -21 186 133 0 0 chrY 10683458 10683488 -14029591 + (CA)n Simple_repeat Simple_repeat 2 31 0 211 280 48 6 chrY 10683716 10683884 -14029195 + (TA)n Simple_repeat Simple_repeat 1 175 0 1573 221 7 0 chrY 10684176 10684474 -14028605 + AluSx SINE Alu 1 300 -12 619 283 35 0 chrY 10687551 10687724 -14025355 + MER20 DNA MER1_type 41 219 0 687 320 0 0 chrY 10687802 10687999 -14025080 + MER20 DNA MER1_type 23 219 0 1979 175 14 11 chrY 10688103 10688468 -14024611 + MSTB1 LTR MaLR 1 366 -66 1199 252 13 23 chrY 10688468 10688777 -14024302 - AluJo SINE Alu -1 311 6 419 109 16 0 chrY 10688784 10688848 -14024231 + MSTB1 LTR MaLR 368 432 0 247 203 14 81 chrY 10688850 10688924 -14024155 + MIR SINE MIR 52 120 -142 528 146 0 0 chrY 10689834 10689923 -14023156 + (A)n Simple_repeat Simple_repeat 1 89 0 246 325 89 57 chrY 10690192 10690349 -14022730 + MER91A DNA MER1_type 13 174 -22 219 235 29 44 chrY 10690788 10690856 -14022223 - L3 LINE CR1 -473 1104 1038 1256 225 11 8 chrY 10691171 10691433 -14021646 - AluJo SINE Alu -43 269 7 297 290 159 32 chrY 10691960 10692546 -14020533 - L1ME3A LINE L1 -221 6018 5359 300 303 127 47 chrY 10692547 10692628 -14020451 - L1ME3A LINE L1 -878 5337 5264 2144 123 0 0 chrY 10692628 10692912 -14020167 - AluSg SINE Alu -16 294 11 300 303 127 47 chrY 10692912 10693130 -14019949 - L1ME3A LINE L1 -951 5264 5014 463 301 74 68 chrY 10693185 10693700 -14019379 - L1ME3A LINE L1 -1337 4878 4361 320 291 41 73 chrY 10693706 10694046 -14019033 - L1ME3A LINE L1 -1894 4321 3993 2129 131 3 3 chrY 10694068 10694403 -14018676 - AluSx SINE Alu 0 312 1 249 229 60 6 chrY 10694442 10694608 -14018471 + (TA)n Simple_repeat Simple_repeat 1 175 0 668 176 0 0 chrY 10694921 10695029 -14018050 - FRAM SINE Alu -9 167 60 1793 157 11 11 chrY 10695058 10695374 -14017705 + AluSx SINE Alu 3 318 0 317 274 125 30 chrY 10695480 10695808 -14017271 - L1ME3A LINE L1 -2935 3280 2922 595 324 45 59 chrY 10695861 10696373 -14016706 - L1ME3A LINE L1 -3435 2780 2276 1450 185 9 68 chrY 10696513 10696837 -14016242 + AluJo SINE Alu 1 305 -7 309 297 141 32 chrY 10697151 10697400 -14015679 - L1ME3A LINE L1 -4616 1780 1505 1890 137 11 0 chrY 10697439 10697710 -14015369 + AluSq SINE Alu 10 283 -30 51 0 0 0 chrY 10697716 10697767 -14015312 + AT_rich Low_complexity Low_complexity 1 51 0 323 238 36 12 chrY 10697773 10697857 -14015222 - L1MC4 LINE L1 -1343 6699 6614 1249 219 15 25 chrY 10698568 10698842 -14014237 - AluJo SINE Alu -39 273 3 951 210 15 10 chrY 10699613 10699813 -14013266 - AluJb SINE Alu -26 286 86 2214 62 0 28 chrY 10700248 10700572 -14012507 - AluY SINE Alu 0 316 1 183 382 24 16 chrY 10700922 10701045 -14012034 + MIR SINE MIR 131 254 -8 981 269 45 52 chrY 10701678 10702143 -14010936 + L1M4 LINE L1 4416 4877 -1269 347 217 12 12 chrY 10702660 10702743 -14010336 - MER20 DNA MER1_type -3 216 134 24 0 0 0 chrY 10702785 10702809 -14010270 + AT_rich Low_complexity Low_complexity 1 24 0 1371 221 7 17 chrY 10702835 10703133 -14009946 + AluJo SINE Alu 1 295 -17 2505 196 44 21 chrY 10704609 10705134 -14007945 + MER44D DNA MER2_type 14 605 0 1227 283 3 6 chrY 10705138 10705481 -14007598 - MLT1A1-int LTR MaLR -1393 342 1 1437 205 16 53 chrY 10705481 10705857 -14007222 - MLT1A1 LTR MaLR 0 365 4 25 51 0 0 chrY 10707843 10707882 -14005197 + AT_rich Low_complexity Low_complexity 1 39 0 10352 147 11 31 chrY 10710387 10712817 -14000262 + L1PA7 LINE L1 172 2606 -3855 * 13018 129 4 9 chrY 10712814 10714922 -13998157 + L1PA7 LINE L1 3247 5343 -1118 6074 88 10 8 chrY 10715008 10716127 -13996952 + L1PA7 LINE L1 5346 6463 -6 188 67 33 0 chrY 10716442 10716472 -13996607 + (CA)n Simple_repeat Simple_repeat 2 32 0 319 238 50 6 chrY 10717141 10717301 -13995778 + (TA)n Simple_repeat Simple_repeat 2 168 0 191 113 65 0 chrY 10717332 10717394 -13995685 + (TA)n Simple_repeat Simple_repeat 1 66 0 23 33 0 0 chrY 10717728 10717758 -13995321 + AT_rich Low_complexity Low_complexity 1 30 0 309 207 0 0 chrY 10718577 10718659 -13994420 + GA-rich Low_complexity Low_complexity 1 82 0 1742 164 3 28 chrY 10718709 10718996 -13994083 + AluJo SINE Alu 3 282 -30 396 0 0 0 chrY 10718999 10719043 -13994036 + (TAAA)n Simple_repeat Simple_repeat 4 47 0 742 261 54 0 chrY 10719655 10719877 -13993202 - L1MA3 LINE L1 -1 6304 6071 1561 193 7 20 chrY 10719877 10720177 -13992902 - AluJo SINE Alu -16 296 1 582 183 17 36 chrY 10720446 10720626 -13992453 + MLT2C1 LTR ERVL 193 433 -31 234 271 211 49 chrY 10720839 10721123 -13991956 + L2 LINE L2 1562 1891 -1423 1435 169 45 87 chrY 10721414 10721792 -13991287 + MLT1A1 LTR MaLR 4 365 0 22 0 0 0 chrY 10722741 10722763 -13990316 + AT_rich Low_complexity Low_complexity 1 22 0 571 289 118 53 chrY 10723256 10723705 -13989374 + MLT1G1 LTR MaLR 111 588 -7 3635 157 14 16 chrY 10725153 10725343 -13987736 + L1PA13 LINE L1 5496 5685 -478 2626 30 0 0 chrY 10725343 10725641 -13987438 + AluY SINE Alu 1 298 -13 3635 157 14 16 chrY 10725641 10726117 -13986962 + L1PA13 LINE L1 5685 6160 -3 798 170 0 20 chrY 10726428 10726450 -13986629 + L1P4 LINE L1 5470 5491 -670 2486 58 3 10 chrY 10726450 10726760 -13986319 + AluY SINE Alu 3 310 -1 798 170 0 20 chrY 10726760 10726884 -13986195 + L1P4 LINE L1 5491 5613 -548 694 284 0 20 chrY 10726988 10727185 -13985894 + MER20 DNA MER1_type 25 217 -2 1164 139 11 0 chrY 10727387 10727574 -13985505 - L1PA13 LINE L1 -74 6089 5901 385 188 10 10 chrY 10727869 10727970 -13985109 + CT-rich Low_complexity Low_complexity 3 103 0 1303 210 10 35 chrY 10727973 10728290 -13984789 - AluJo SINE Alu 0 310 1 823 269 61 103 chrY 10729138 10729789 -13983290 - MLT1E2 LTR MaLR 0 626 1 1888 183 0 0 chrY 10729923 10730234 -13982845 - AluSx SINE Alu -1 311 1 1306 196 91 7 chrY 10730359 10730635 -13982444 - AluJo SINE Alu -3 299 1 21 0 0 0 chrY 10731480 10731501 -13981578 + AT_rich Low_complexity Low_complexity 1 21 0 214 330 47 9 chrY 10733098 10733204 -13979875 - L2 LINE L2 0 3313 3204 1696 167 26 7 chrY 10733472 10733778 -13979301 + AluJo SINE Alu 1 312 0 360 0 0 0 chrY 10733816 10733856 -13979223 + (TG)n Simple_repeat Simple_repeat 2 41 0 1933 125 0 41 chrY 10734661 10734980 -13978099 + AluY SINE Alu 1 306 -5 251 308 125 33 chrY 10735363 10735756 -13977323 - L1ME3A LINE L1 -229 5941 5513 1819 163 7 0 chrY 10735850 10736139 -13976940 - AluSx SINE Alu -21 291 1 540 318 0 32 chrY 10736784 10736973 -13976106 - MLT1E2 LTR MaLR -18 608 426 235 123 0 88 chrY 10737211 10737268 -13975811 + L1MA9 LINE L1 5777 5828 -463 1938 48 0 8 chrY 10737276 10737524 -13975555 + AluY SINE Alu 1 246 -65 1020 178 56 0 chrY 10737551 10737765 -13975314 + L1MA9 LINE L1 5814 6039 -273 2242 107 0 0 chrY 10738251 10738560 -13974519 - AluY SINE Alu -2 309 1 21 0 0 0 chrY 10738839 10738860 -13974219 + AT_rich Low_complexity Low_complexity 1 21 0 232 398 8 0 chrY 10739104 10739232 -13973847 - HAL1 LINE L1 -987 1520 1392 281 82 20 0 chrY 10741471 10741520 -13971559 + (TAGA)n Simple_repeat Simple_repeat 2 51 0 285 153 45 9 chrY 10741604 10741715 -13971364 + (TA)n Simple_repeat Simple_repeat 1 115 0 228 67 0 0 chrY 10741758 10741788 -13971291 + (TATATG)n Simple_repeat Simple_repeat 2 31 0 399 288 97 67 chrY 10741792 10742153 -13970926 + L1MC5 LINE L1 6820 7191 -770 1031 153 11 0 chrY 10742159 10742336 -13970743 - THE1C LTR MaLR 0 375 197 189 0 0 0 chrY 10742507 10742528 -13970551 + (A)n Simple_repeat Simple_repeat 1 21 0 237 321 12 12 chrY 10742934 10743015 -13970064 - MER5B DNA MER1_type -62 116 36 299 173 12 0 chrY 10743189 10743270 -13969809 + CT-rich Low_complexity Low_complexity 2 83 0 353 180 56 9 chrY 10743525 10743851 -13969228 + (TA)n Simple_repeat Simple_repeat 1 341 0 234 200 32 48 chrY 10743855 10743980 -13969099 + (TATAA)n Simple_repeat Simple_repeat 2 124 0 284 154 41 45 chrY 10743992 10744245 -13968834 + (TATAA)n Simple_repeat Simple_repeat 1 251 0 180 53 79 0 chrY 10744264 10744302 -13968777 + (TA)n Simple_repeat Simple_repeat 2 42 0 181 326 67 30 chrY 10744880 10745015 -13968064 + L2 LINE L2 2490 2629 -685 339 300 128 0 chrY 10745385 10745612 -13967467 + L1M4 LINE L1 5037 5292 -854 1210 202 39 4 chrY 10745635 10745966 -13967113 - Charlie3 DNA MER1_type 0 2712 35 670 302 118 20 chrY 10746191 10746582 -13966497 + MLT1D LTR MaLR 77 505 0 317 360 20 47 chrY 10746598 10746748 -13966331 + L2 LINE L2 3122 3267 -5 1927 139 3 25 chrY 10746817 10747133 -13965946 + AluY SINE Alu 1 309 -2 200 108 0 27 chrY 10747347 10747384 -13965695 + (TA)n Simple_repeat Simple_repeat 2 37 0 22 56 0 0 chrY 10748324 10748360 -13964719 + AT_rich Low_complexity Low_complexity 1 36 0 200 297 47 0 chrY 10748562 10748626 -13964453 + L2 LINE L2 3206 3272 0 1445 188 4 12 chrY 10748995 10749251 -13963828 - AluSx SINE Alu -13 299 46 24 0 0 0 chrY 10750136 10750160 -13962919 + AT_rich Low_complexity Low_complexity 1 24 0 1552 178 19 4 chrY 10750161 10750420 -13962659 + AluSx SINE Alu 1 263 -49 200 59 29 0 chrY 10750434 10750468 -13962611 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 21 36 0 0 chrY 10750470 10750498 -13962581 + AT_rich Low_complexity Low_complexity 1 28 0 954 142 0 0 chrY 10750516 10750657 -13962422 - AluSg/x SINE Alu -16 294 154 1621 170 81 7 chrY 10751235 10751506 -13961573 + AluSx SINE Alu 3 293 -19 220 312 13 0 chrY 10752349 10752426 -13960653 + (TA)n Simple_repeat Simple_repeat 2 79 0 1980 152 83 0 chrY 10752913 10753249 -13959830 - THE1B LTR MaLR 0 364 1 511 116 11 11 chrY 10753876 10753971 -13959108 + (TTCC)n Simple_repeat Simple_repeat 2 96 0 834 246 86 52 chrY 10754237 10754599 -13958480 - LTR8A LTR ERV1 0 727 354 390 40 0 0 chrY 10754621 10754671 -13958408 - THE1C LTR MaLR -325 50 1 318 188 0 0 chrY 10754939 10755003 -13958076 + L1PA15 LINE L1 6087 6150 -15 255 146 0 0 chrY 10755029 10755077 -13958002 - LTR8A LTR ERV1 -405 322 275 331 137 0 0 chrY 10755078 10755129 -13957950 - pTR5 LTR ERV1 -2280 158 108 260 125 0 0 chrY 10755122 10755162 -13957917 - LTR12 LTR ERV1 -668 46 7 * 9115 129 7 21 chrY 10755178 10756710 -13956369 - HERV9 LTR ERV1 -3 8396 6887 * 26027 148 15 10 chrY 10756708 10762111 -13950968 - HERV9 LTR ERV1 -2831 5568 54 698 167 41 20 chrY 10762087 10762249 -13950830 - LTR12 LTR ERV1 -231 483 299 * 316 235 0 0 chrY 10762249 10762330 -13950749 - LTR30 LTR ERV1 -98 624 544 988 139 8 123 chrY 10762447 10762699 -13950380 - LTR12 LTR ERV1 -483 231 9 1495 159 10 14 chrY 10762699 10762994 -13950085 - LTR8A LTR ERV1 -433 294 1 1177 216 63 4 chrY 10765518 10765772 -13947307 - AluJo SINE Alu -41 271 3 475 207 13 0 chrY 10766146 10766296 -13946783 + CT-rich Low_complexity Low_complexity 1 152 0 380 265 0 17 chrY 10766350 10766531 -13946548 + CT-rich Low_complexity Low_complexity 2 179 0 1537 181 0 7 chrY 10767294 10767564 -13945515 - AluSx SINE Alu -2 310 43 1495 192 0 22 chrY 10767590 10767903 -13945176 + AluJo SINE Alu 1 306 -6 181 312 101 37 chrY 10767952 10768061 -13945018 + MIR3 SINE MIR 93 208 0 1606 214 0 3 chrY 10768463 10768767 -13944312 + AluJb SINE Alu 1 303 -9 452 207 9 0 chrY 10769207 10769318 -13943761 + (TATATG)n Simple_repeat Simple_repeat 3 114 0 271 44 44 0 chrY 10769976 10770021 -13943058 + (CAAAAA)n Simple_repeat Simple_repeat 2 48 0 198 0 0 0 chrY 10770473 10770495 -13942584 + (TG)n Simple_repeat Simple_repeat 2 23 0 243 240 0 0 chrY 10771574 10771624 -13941455 + (CA)n Simple_repeat Simple_repeat 1 50 0 931 202 22 53 chrY 10771821 10771996 -13941083 - AluJo SINE Alu -5 307 139 1370 221 34 10 chrY 10771996 10772294 -13940785 - AluJo SINE Alu -7 305 1 931 202 22 53 chrY 10772294 10772346 -13940733 - AluJo SINE Alu -173 139 87 367 233 19 19 chrY 10772474 10772790 -13940289 + (TA)n Simple_repeat Simple_repeat 1 316 0 696 176 0 24 chrY 10773496 10773621 -13939458 + FLAM_C SINE Alu 2 123 -20 6829 73 3 3 chrY 10773625 10774548 -13938531 - MER11C LTR ERVK -148 923 1 2140 86 0 0 chrY 10774550 10774842 -13938237 - L1P LINE L1 -5851 295 4 286 280 28 0 chrY 10774866 10774973 -13938106 + MER113 DNA MER1_type? 199 308 -213 213 128 0 26 chrY 10774974 10775013 -13938066 + (GAAAA)n Simple_repeat Simple_repeat 2 39 0 219 276 0 0 chrY 10776232 10776330 -13936749 + GA-rich Low_complexity Low_complexity 4 101 0 676 190 6 17 chrY 10776344 10776523 -13936556 + GA-rich Low_complexity Low_complexity 1 177 0 357 229 23 23 chrY 10776554 10776729 -13936350 + GA-rich Low_complexity Low_complexity 4 178 0 219 204 0 0 chrY 10776777 10776826 -13936253 + GA-rich Low_complexity Low_complexity 3 51 0 1699 159 27 33 chrY 10777448 10777749 -13935330 - AluSg SINE Alu -11 299 1 221 209 15 0 chrY 10779368 10779435 -13933644 + (TA)n Simple_repeat Simple_repeat 1 68 0 300 330 122 27 chrY 10779655 10779843 -13933236 - MIR SINE MIR -10 252 47 704 230 65 10 chrY 10780812 10781012 -13932067 - MER20 DNA MER1_type 0 219 9 241 253 10 10 chrY 10785722 10785821 -13927258 + (TA)n Simple_repeat Simple_repeat 2 100 0 1464 206 16 0 chrY 10785822 10786133 -13926946 + MER7A DNA MER2_type 2 315 -31 329 301 29 12 chrY 10786160 10786333 -13926746 + (CATATA)n Simple_repeat Simple_repeat 5 180 0 1253 199 71 0 chrY 10786393 10786689 -13926390 + MER44D DNA MER2_type 14 600 -9 240 232 0 29 chrY 10786692 10786761 -13926318 + (CATATA)n Simple_repeat Simple_repeat 5 71 0 231 114 0 0 chrY 10786825 10786860 -13926219 + (TA)n Simple_repeat Simple_repeat 1 35 0 234 305 24 12 chrY 10787009 10787091 -13925988 - L2 LINE L2 0 3272 3190 485 276 90 0 chrY 10789415 10789549 -13923530 - MIR SINE MIR -40 222 77 228 86 0 0 chrY 10789740 10789775 -13923304 + (CA)n Simple_repeat Simple_repeat 2 36 0 273 29 0 0 chrY 10791768 10791802 -13921277 + (TTCC)n Simple_repeat Simple_repeat 3 36 0 312 225 0 0 chrY 10791805 10791876 -13921203 - AluJ/FRAM SINE Alu -2 300 230 1543 182 0 4 chrY 10791901 10792154 -13920925 - AluSx SINE Alu -60 252 1 327 121 0 0 chrY 10792245 10792303 -13920776 + (ATG)n Simple_repeat Simple_repeat 2 59 0 1898 170 0 3 chrY 10793061 10793367 -13919712 + AluSx SINE Alu 5 309 -3 1985 140 0 0 chrY 10793547 10793832 -13919247 + AluSg SINE Alu 1 285 -25 27 62 0 0 chrY 10794441 10794489 -13918590 + AT_rich Low_complexity Low_complexity 1 48 0 202 348 22 0 chrY 10795253 10795342 -13917737 + (TATATG)n Simple_repeat Simple_repeat 4 94 0 390 178 30 21 chrY 10795556 10795659 -13917420 - L1MD3 LINE L1 -2 7987 7682 443 188 43 0 chrY 10795672 10795789 -13917290 - L1MA7 LINE L1 -11 6280 6159 1255 198 45 10 chrY 10795793 10796081 -13916998 - L1MA8 LINE L1 -243 6048 5751 301 144 22 55 chrY 10796314 10796495 -13916584 + (TA)n Simple_repeat Simple_repeat 2 176 0 202 130 43 29 chrY 10796518 10796587 -13916492 + (TATATG)n Simple_repeat Simple_repeat 5 74 0 1216 114 0 23 chrY 10797085 10797261 -13915818 + AluSc SINE Alu 134 305 -4 243 173 0 0 chrY 10798444 10798496 -13914583 + T-rich Low_complexity Low_complexity 1 52 0 22 0 0 0 chrY 10798507 10798529 -13914550 + AT_rich Low_complexity Low_complexity 1 22 0 1229 188 197 11 chrY 10798571 10798922 -13914157 + MSTA LTR MaLR 13 428 0 215 194 0 0 chrY 10799160 10799196 -13913883 + (TGG)n Simple_repeat Simple_repeat 3 38 0 1452 209 4 4 chrY 10799230 10799503 -13913576 + AluJo SINE Alu 1 273 -39 273 238 71 0 chrY 10799543 10799627 -13913452 + L1MD3 LINE L1 7136 7225 -770 5421 153 1 2 chrY 10800144 10801064 -13912015 + L1P3 LINE L1 500 1418 -5043 5811 138 16 4 chrY 10801065 10802094 -13910985 + L1P3 LINE L1 2120 3161 -3300 * 38622 62 10 3 chrY 10802093 10808024 -13905055 + L1PA3 LINE L1 1 5977 -178 8616 127 11 3 chrY 10808036 10809485 -13903594 + L1P3 LINE L1 3775 5234 -1227 1507 227 67 61 chrY 10809487 10809993 -13903086 - LTR22 LTR ERVK 0 509 1 27783 131 14 4 chrY 10809993 10814461 -13898618 - HERVK22 LTR ERVK 0 6837 2325 4677 143 20 85 chrY 10814454 10815422 -13897657 - HERVK22 LTR ERVK -5932 905 1 * 1614 233 56 32 chrY 10815422 10815919 -13897160 - LTR22 LTR ERVK 0 509 1 5975 97 23 1 chrY 10815919 10817126 -13895953 + L1PA7 LINE L1 4916 6152 -2 31 0 0 0 chrY 10817534 10817565 -13895514 + AT_rich Low_complexity Low_complexity 1 31 0 216 182 0 0 chrY 10817627 10817671 -13895408 + (TG)n Simple_repeat Simple_repeat 2 45 0 27 0 0 0 chrY 10817738 10817765 -13895314 + AT_rich Low_complexity Low_complexity 1 27 0 1728 181 10 7 chrY 10818158 10818457 -13894622 + AluSx SINE Alu 1 300 -12 1066 68 0 0 chrY 10818977 10819109 -13893970 + AluY SINE Alu 1 132 -179 35 0 0 0 chrY 10819109 10819144 -13893935 + AT_rich Low_complexity Low_complexity 1 35 0 1378 119 0 0 chrY 10819144 10819376 -13893703 + AluY SINE Alu 118 349 0 1542 153 8 28 chrY 10819855 10820110 -13892969 + AluSq SINE Alu 1 250 -63 23 0 0 0 chrY 10821521 10821544 -13891535 + AT_rich Low_complexity Low_complexity 1 23 0 725 285 82 17 chrY 10821820 10822286 -13890793 - L1ME3 LINE L1 -8 6154 5660 5519 108 10 8 chrY 10822352 10823214 -13889865 - L1PA7 LINE L1 -15 6139 5276 * 38265 69 3 3 chrY 10823191 10825726 -13887353 - L1PA4 LINE L1 -5 6150 3618 2794 19 0 0 chrY 10825726 10826035 -13887044 - AluYa5 SINE Alu -2 309 1 38265 69 3 3 chrY 10826035 10829644 -13883435 - L1PA4 LINE L1 -2537 3618 3 3567 142 16 1 chrY 10829664 10830339 -13882740 - L1PA7 LINE L1 -844 5302 4618 * 10248 125 24 11 chrY 10830338 10832144 -13880935 - L1PA7 LINE L1 -1802 4344 2515 426 191 0 0 chrY 10832207 10832275 -13880804 + AluSp SINE Alu 13 80 -232 1132 177 9 28 chrY 10882275 10882490 -13830589 + AluSp SINE Alu 75 285 -28 225 94 0 0 chrY 10882490 10882522 -13830557 + (TA)n Simple_repeat Simple_repeat 2 33 0 205 229 0 48 chrY 10882524 10882607 -13830472 + (TCTCTG)n Simple_repeat Simple_repeat 3 81 0 617 286 123 17 chrY 10882636 10882986 -13830093 - L1MDa LINE L1 -3296 3244 2858 252 290 104 42 chrY 10883151 10883410 -13829669 - L1MDa LINE L1 -4814 1726 1452 2169 96 7 0 chrY 10883431 10883733 -13829346 + AluY SINE Alu 2 305 -6 36 0 0 0 chrY 10883883 10883919 -13829160 + AT_rich Low_complexity Low_complexity 1 36 0 420 243 17 28 chrY 10885163 10885344 -13827735 + (TA)n Simple_repeat Simple_repeat 2 180 0 1298 151 4 110 chrY 10885348 10885529 -13827550 - AluSx SINE Alu -9 303 159 283 78 39 0 chrY 10885529 10885580 -13827499 + (TA)n Simple_repeat Simple_repeat 2 54 0 1298 151 4 110 chrY 10885580 10885670 -13827409 - AluSx SINE Alu -153 159 61 207 216 27 27 chrY 10885696 10885770 -13827309 + (TA)n Simple_repeat Simple_repeat 1 74 0 290 99 28 28 chrY 10885798 10885869 -13827210 + (TA)n Simple_repeat Simple_repeat 2 72 0 1172 224 120 7 chrY 10885874 10886182 -13826897 + MER2 DNA MER2_type 2 344 -1 201 39 0 0 chrY 10886201 10886227 -13826852 + (CA)n Simple_repeat Simple_repeat 1 26 0 225 303 40 10 chrY 10887009 10887108 -13825971 - MLT1H LTR MaLR -48 501 400 242 281 0 0 chrY 10887809 10887873 -13825206 + (TATATG)n Simple_repeat Simple_repeat 5 68 0 397 277 7 40 chrY 10887897 10888045 -13825034 - MER3 DNA MER1_type -79 130 35 1126 198 73 51 chrY 10888620 10888893 -13824186 + AluJo SINE Alu 9 287 -25 499 286 34 47 chrY 10891203 10891500 -13821579 - L1MC5 LINE L1 -582 7379 7087 299 281 24 16 chrY 10891520 10891643 -13821436 + L1MC4 LINE L1 6884 7038 -1004 225 0 0 0 chrY 10891877 10891902 -13821177 + (TA)n Simple_repeat Simple_repeat 2 26 0 1366 124 287 176 chrY 10893032 10893554 -13819525 - LTR12 LTR ERV1 0 714 2 228 207 0 146 chrY 10893602 10893624 -13819455 + MIR SINE MIR 47 71 -191 1538 193 18 7 chrY 10893624 10893935 -13819144 + AluSx SINE Alu 1 312 0 228 207 0 146 chrY 10893935 10893994 -13819085 + MIR SINE MIR 71 116 -146 1394 211 0 11 chrY 10894436 10894715 -13818364 + AluJo SINE Alu 26 301 -11 257 291 12 0 chrY 10894731 10894817 -13818262 - MLT1F1 LTR MaLR -408 159 73 659 310 25 8 chrY 10894980 10895225 -13817854 - MIR SINE MIR -2 260 12 2302 204 42 9 chrY 10895817 10896345 -13816734 + L1MB4 LINE L1 5600 6144 -36 44 56 0 0 chrY 10896378 10896450 -13816629 + AT_rich Low_complexity Low_complexity 1 72 0 435 338 14 0 chrY 10896945 10897084 -13815995 + MER5B DNA MER1_type 7 147 -31 1020 143 0 227 chrY 10897087 10897457 -13815622 + AluJb SINE Alu 1 286 -16 244 234 21 53 chrY 10898352 10898446 -13814633 + GA-rich Low_complexity Low_complexity 6 96 0 24 67 0 0 chrY 10898646 10898691 -13814388 + AT_rich Low_complexity Low_complexity 1 45 0 297 51 0 0 chrY 10898704 10898743 -13814336 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 1609 215 32 9 chrY 10899688 10900028 -13813051 - MER7A DNA MER2_type 0 346 1 380 335 116 38 chrY 10900072 10900799 -13812280 + L1ME4a LINE L1 5299 6103 -18 1359 230 96 8 chrY 10900942 10901298 -13811781 - MLT2C1 LTR ERVL -2 395 9 23 0 0 0 chrY 10902078 10902101 -13810978 + AT_rich Low_complexity Low_complexity 1 23 0 30198 47 3 0 chrY 10902353 10906956 -13806123 - L1PA2 LINE L1 0 6155 1540 219 198 79 0 chrY 10907790 10907891 -13805188 + (TA)n Simple_repeat Simple_repeat 2 110 0 1433 195 59 3 chrY 10908287 10908574 -13804505 + AluSx SINE Alu 1 303 -9 1762 147 6 72 chrY 10909665 10909999 -13803080 - AluSx SINE Alu 0 312 1 532 223 13 13 chrY 10910304 10910539 -13802540 + GA-rich Low_complexity Low_complexity 1 235 0 2066 150 25 11 chrY 10910593 10910959 -13802120 + THE1C LTR MaLR 1 371 -4 1701 168 4 0 chrY 10911689 10911963 -13801116 - AluSc SINE Alu -19 290 16 245 276 142 15 chrY 10912129 10912263 -13800816 - L2 LINE L2 -4 3309 3159 23 33 0 0 chrY 10912813 10912843 -13800236 + AT_rich Low_complexity Low_complexity 1 30 0 301 299 102 27 chrY 10913158 10913345 -13799734 + HAL1 LINE L1 1450 1650 -857 358 328 8 23 chrY 10913574 10913702 -13799377 + MLT1G LTR MaLR 243 368 -222 732 272 47 43 chrY 10913738 10913970 -13799109 + MLT1G LTR MaLR 357 589 -1 16402 38 3 0 chrY 10913971 10916011 -13797068 + L1P LINE L1 1801 3846 -2300 1745 111 0 8 chrY 10916319 10916587 -13796492 - AluY SINE Alu 0 304 39 1353 238 77 71 chrY 10916635 10917144 -13795935 - MLT2B1 LTR ERVL -8 512 1 26 0 0 0 chrY 10917208 10917234 -13795845 + AT_rich Low_complexity Low_complexity 1 26 0 3674 123 27 2 chrY 10917445 10918008 -13795071 + LTR19B LTR ERV1 1 577 -3 1573 77 0 0 chrY 10918008 10918217 -13794862 - L1PA4 LINE L1 -2 6153 5945 1540 206 0 0 chrY 10918217 10918479 -13794600 - AluSx SINE Alu -50 262 1 655 295 43 6 chrY 10918835 10919061 -13794018 - MLT1E1 LTR MaLR -22 632 334 281 282 14 0 chrY 10919236 10919307 -13793772 - MLT1E LTR MaLR -463 130 59 23 54 0 0 chrY 10919816 10919853 -13793226 + AT_rich Low_complexity Low_complexity 1 37 0 2175 157 8 3 chrY 10920795 10921152 -13791927 + THE1B LTR MaLR 1 359 -5 4066 144 32 4 chrY 10921704 10922428 -13790651 - L1MA4A LINE L1 -5 6298 5555 188 303 0 40 chrY 10922686 10922762 -13790317 + L3 LINE CR1 402 474 -1103 24 67 0 0 chrY 10923018 10923063 -13790016 + AT_rich Low_complexity Low_complexity 1 45 0 893 164 0 0 chrY 10923064 10923210 -13789869 - L1PB3 LINE L1 -5 6149 6004 3284 173 10 11 chrY 10923457 10924064 -13789015 - L1PA15 LINE L1 0 6165 5560 373 241 30 84 chrY 10924447 10924650 -13788429 + L1M4 LINE L1 3199 3390 -2756 1574 194 0 58 chrY 10924650 10924959 -13788120 + MER1A DNA MER1_type 1 291 -238 300 258 8 25 chrY 10924981 10925101 -13787978 + (TA)n Simple_repeat Simple_repeat 1 118 0 215 250 0 24 chrY 10925159 10925243 -13787836 + (TA)n Simple_repeat Simple_repeat 2 83 0 994 285 62 0 chrY 10925314 10925637 -13787442 + MER2 DNA MER2_type 2 344 0 1545 194 3 48 chrY 10925639 10925954 -13787125 - AluSx SINE Alu -11 301 1 257 75 25 0 chrY 10925992 10926032 -13787047 + (TCTA)n Simple_repeat Simple_repeat 4 44 0 1125 247 85 16 chrY 10926032 10926396 -13786683 - MLT2B1 LTR ERVL -62 458 70 421 281 75 75 chrY 10926406 10926675 -13786404 - MLT1D LTR MaLR -198 269 1 1634 185 3 7 chrY 10926971 10927268 -13785811 - AluSx SINE Alu -14 298 3 606 207 0 0 chrY 10927270 10927386 -13785693 - AluJo SINE Alu -8 304 189 933 173 0 101 chrY 10927407 10927644 -13785435 - AluJo SINE Alu -99 213 1 298 296 0 0 chrY 10928628 10928716 -13784363 + MER58 DNA MER1_type 173 260 -2160 230 71 0 24 chrY 10928856 10928898 -13784181 + (TTTTTG)n Simple_repeat Simple_repeat 6 46 0 249 33 0 0 chrY 10929175 10929205 -13783874 + (T)n Simple_repeat Simple_repeat 1 30 0 1835 188 18 9 chrY 10929245 10929585 -13783494 + MER61A LTR ERV1 1 343 0 200 35 35 0 chrY 10930121 10930150 -13782929 + (TG)n Simple_repeat Simple_repeat 1 30 0 26 0 0 0 chrY 10930467 10930493 -13782586 + AT_rich Low_complexity Low_complexity 1 26 0 605 307 29 4 chrY 10930787 10931009 -13782070 - MIR SINE MIR -2 260 34 21 0 0 0 chrY 10932951 10932972 -13780107 + AT_rich Low_complexity Low_complexity 1 21 0 539 59 247 0 chrY 10933385 10933470 -13779609 - L1P LINE L1 -2021 4125 4020 516 72 0 0 chrY 10933957 10934026 -13779053 + (TA)n Simple_repeat Simple_repeat 1 69 0 472 238 98 69 chrY 10934045 10934372 -13778707 + MLT1B LTR MaLR 52 390 0 577 107 0 0 chrY 10934781 10934856 -13778223 + LTR22B LTR ERVK 418 492 0 584 101 56 22 chrY 10934856 10934945 -13778134 + THE1B LTR MaLR 8 99 -265 1443 131 0 0 chrY 10934949 10935171 -13777908 - HERV9 LTR ERV1 -7759 640 419 333 281 58 16 chrY 10935326 10935447 -13777632 + MIR SINE MIR 58 183 -79 22 70 0 0 chrY 10935510 10935553 -13777526 + AT_rich Low_complexity Low_complexity 1 43 0 2001 62 0 8 chrY 10935761 10936054 -13777025 + L1PA3 LINE L1 5884 6174 0 1300 227 22 7 chrY 10936395 10936664 -13776415 - AluJo SINE Alu -30 282 10 711 256 6 0 chrY 10937196 10937356 -13775723 - AluJo SINE Alu -2 300 140 667 189 68 20 chrY 10937394 10937542 -13775537 - AluJo SINE Alu -153 159 5 13127 52 1 1 chrY 10937696 10940124 -13772955 - L1PA3 LINE L1 -1 6154 3728 21937 65 26 0 chrY 10940124 10943075 -13770004 + L1PA3 LINE L1 727 3753 -2393 246 320 16 24 chrY 10943104 10943229 -13769850 - MLT1E2 LTR MaLR -496 130 7 1126 245 14 25 chrY 10943441 10943723 -13769356 + AluJo SINE Alu 1 279 -33 39308 66 2 8 chrY 10943726 10949930 -13763149 + L1PA3 LINE L1 3 6102 -29 258 71 18 36 chrY 10949937 10949993 -13763086 + (TAAAA)n Simple_repeat Simple_repeat 1 55 0 1018 70 0 0 chrY 10949993 10950122 -13762957 + L1PA3 LINE L1 6024 6152 -3 825 158 17 6 chrY 10950170 10950347 -13762732 + GA-rich Low_complexity Low_complexity 1 179 0 762 173 6 11 chrY 10950374 10950553 -13762526 + GA-rich Low_complexity Low_complexity 3 180 0 475 141 0 24 chrY 10950553 10950638 -13762441 + (GAAA)n Simple_repeat Simple_repeat 2 84 0 1420 196 34 45 chrY 10951076 10951434 -13761645 + MLT1A1 LTR MaLR 12 365 0 1951 159 7 3 chrY 10951584 10951893 -13761186 - AluSx SINE Alu -2 310 1 812 118 72 26 chrY 10952072 10952225 -13760854 + L1MA1 LINE L1 5448 5607 -695 1856 132 30 10 chrY 10952234 10952732 -13760347 + L1MA1 LINE L1 5721 6302 0 21 0 0 0 chrY 10952732 10952753 -13760326 + AT_rich Low_complexity Low_complexity 1 21 0 548 232 38 26 chrY 10953043 10953229 -13759850 - L1MB5 LINE L1 -10 6164 5980 198 103 0 0 chrY 10953230 10953259 -13759820 + (TG)n Simple_repeat Simple_repeat 2 30 0 2091 180 20 48 chrY 10953376 10953732 -13759347 - L1MA7 LINE L1 -1 6290 5951 2818 3 0 0 chrY 10953732 10954033 -13759046 - AluYa5 SINE Alu 0 311 11 2091 180 20 48 chrY 10954033 10954181 -13758898 - L1MA7 LINE L1 -340 5951 5800 488 118 32 21 chrY 10954180 10954273 -13758806 + L1MA7 LINE L1 5706 5799 -504 * 26 50 0 0 chrY 10954281 10954321 -13758758 + AT_rich Low_complexity Low_complexity 1 40 0 661 251 92 38 chrY 10954572 10954922 -13758157 + MLT1C LTR MaLR 14 391 -76 191 271 0 86 chrY 10957217 10957287 -13755792 + MIR SINE MIR 129 192 -70 766 120 0 63 chrY 10957662 10957804 -13755275 - L1PA8 LINE L1 -138 6034 5902 * 923 67 75 0 chrY 10957781 10957915 -13755164 + L1PA8 LINE L1 6029 6172 0 23 0 0 0 chrY 10959054 10959077 -13754002 + AT_rich Low_complexity Low_complexity 1 23 0 840 37 0 0 chrY 10960310 10960418 -13752661 + (TA)n Simple_repeat Simple_repeat 1 108 0 28 0 0 0 chrY 10961194 10961222 -13751857 + AT_rich Low_complexity Low_complexity 1 28 0 772 39 19 0 chrY 10962024 10962128 -13750951 + (TTTC)n Simple_repeat Simple_repeat 2 107 0 14428 54 5 14 chrY 10962128 10964788 -13748291 - L1PA4 LINE L1 -11 6144 3501 2044 160 0 0 chrY 10964802 10965109 -13747970 - AluSx SINE Alu 0 312 6 1171 220 27 36 chrY 10965115 10965452 -13747627 - THE1C LTR MaLR -41 334 1 27 0 0 0 chrY 10965626 10965653 -13747426 + AT_rich Low_complexity Low_complexity 1 27 0 380 217 46 33 chrY 10965653 10965693 -13747386 - L1MA4 LINE L1 0 6300 6262 396 0 0 0 chrY 10965693 10965737 -13747342 + (TA)n Simple_repeat Simple_repeat 2 45 0 380 217 46 33 chrY 10965737 10965848 -13747231 - L1MA4 LINE L1 -38 6262 6147 319 291 0 15 chrY 10965907 10966038 -13747041 + L1MC4 LINE L1 6614 6703 -1339 339 171 0 0 chrY 10966043 10966119 -13746960 + (TA)n Simple_repeat Simple_repeat 1 76 0 195 42 0 0 chrY 10966138 10966162 -13746917 + (GA)n Simple_repeat Simple_repeat 2 25 0 2512 122 13 0 chrY 10966162 10966546 -13746533 - MLT2A1 LTR ERVL -52 392 1 34249 122 24 29 chrY 10966546 10972231 -13740848 - HERVL-A1 LTR ERVL 0 5654 1 248 140 0 35 chrY 10972231 10972288 -13740791 - MLT2A1 LTR ERVL 0 444 390 320 264 8 0 chrY 10972351 10972476 -13740603 + (TA)n Simple_repeat Simple_repeat 1 126 0 2474 129 5 0 chrY 10972533 10972912 -13740167 - MLT2A1 LTR ERVL -63 381 1 1857 216 131 9 chrY 10972918 10973451 -13739628 - L1MA3 LINE L1 -163 6142 5545 838 222 35 117 chrY 10973831 10974173 -13738906 - MLT1C LTR MaLR -7 460 147 1768 162 43 118 chrY 10974173 10974680 -13738399 + LTR12 LTR ERV1 6 474 -240 19203 150 12 15 chrY 10974706 10974822 -13738257 + HERV9 LTR ERV1 54 169 -8230 2297 105 0 0 chrY 10974822 10975117 -13737962 + AluY SINE Alu 2 296 -15 19203 150 12 15 chrY 10975117 10979276 -13733803 + HERV9 LTR ERV1 169 4394 -4005 * 22904 129 10 16 chrY 10979274 10983145 -13729934 + HERV9 LTR ERV1 4551 8399 0 720 153 324 5 chrY 10983145 10983361 -13729718 + LTR12 LTR ERV1 1 285 -429 301 194 15 0 chrY 10983362 10983429 -13729650 + LTR30 LTR ERV1 553 620 -102 643 174 25 0 chrY 10983429 10983550 -13729529 + LTR12 LTR ERV1 355 478 -236 567 264 0 25 chrY 10983553 10983712 -13729367 - MLT1C LTR MaLR -312 155 1 40 21 0 0 chrY 10983911 10983958 -13729121 + AT_rich Low_complexity Low_complexity 1 47 0 1386 222 0 11 chrY 10984080 10984355 -13728724 - AluJo SINE Alu -28 284 13 394 273 0 0 chrY 10984548 10984658 -13728421 + L1MA9 LINE L1 6170 6279 -33 198 250 0 0 chrY 10985007 10985051 -13728028 + MIR SINE MIR 219 262 0 21 0 0 0 chrY 10985209 10985230 -13727849 + AT_rich Low_complexity Low_complexity 1 21 0 189 74 0 0 chrY 10985250 10985277 -13727802 + (TTTTTG)n Simple_repeat Simple_repeat 4 30 0 24 0 0 0 chrY 10985511 10985535 -13727544 + AT_rich Low_complexity Low_complexity 1 24 0 879 219 0 6 chrY 10985544 10985704 -13727375 + FRAM SINE Alu 1 157 -19 228 217 33 0 chrY 10986123 10986215 -13726864 + GA-rich Low_complexity Low_complexity 2 96 0 255 125 0 0 chrY 10987074 10987114 -13725965 + (TTCC)n Simple_repeat Simple_repeat 3 42 0 1726 170 62 0 chrY 10987557 10987945 -13725134 - L1MB3 LINE L1 -2 6181 5770 450 0 0 0 chrY 10988182 10988232 -13724847 + (CA)n Simple_repeat Simple_repeat 2 51 0 388 293 166 51 chrY 10988233 10988721 -13724358 - L1M4 LINE L1 -1559 4587 4044 509 263 0 0 chrY 10988960 10989074 -13724005 + FLAM_C SINE Alu 5 118 -25 1294 192 54 4 chrY 10989292 10989553 -13723526 - AluSx SINE Alu -6 306 33 26 0 0 0 chrY 10989555 10989581 -13723498 + AT_rich Low_complexity Low_complexity 1 26 0 327 316 35 29 chrY 10989753 10989924 -13723155 - L1M4 LINE L1 -1868 4278 4107 26 0 0 0 chrY 10990211 10990237 -13722842 + AT_rich Low_complexity Low_complexity 1 26 0 180 0 0 0 chrY 10992581 10992601 -13720478 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 432 212 17 8 chrY 10992769 10993011 -13720068 + GA-rich Low_complexity Low_complexity 1 244 0 342 0 0 0 chrY 10993776 10993814 -13719265 + (CA)n Simple_repeat Simple_repeat 2 39 0 28 61 0 0 chrY 10993991 10994040 -13719039 + AT_rich Low_complexity Low_complexity 1 49 0 1303 197 4 25 chrY 10994093 10994337 -13718742 - AluJo SINE Alu -32 280 42 200 324 21 78 chrY 10995032 10995174 -13717905 + MIR SINE MIR 52 185 -77 1410 209 4 18 chrY 10996497 10996775 -13716304 - AluJb SINE Alu -4 308 35 2095 143 0 0 chrY 10997477 10997778 -13715301 - AluSg1 SINE Alu -5 304 4 1250 192 61 34 chrY 10998981 10999231 -13713848 - L1MB3 LINE L1 0 6183 5922 2017 205 29 92 chrY 10999231 10999884 -13713195 + LTR9 LTR ERV1 1 612 0 1250 192 61 34 chrY 10999884 10999988 -13713091 - L1MB3 LINE L1 -261 5922 5822 349 182 0 45 chrY 10999969 11000057 -13713022 - L1MB3 LINE L1 -304 5879 5796 * 1821 173 12 9 chrY 11000412 11000758 -13712321 + MLT1B LTR MaLR 4 350 -40 1135 184 24 0 chrY 11000766 11000973 -13712106 + MLT1B LTR MaLR 179 390 0 25 51 0 0 chrY 11000980 11001019 -13712060 + AT_rich Low_complexity Low_complexity 1 39 0 16953 71 8 1 chrY 11001337 11004411 -13708668 - L1PA5 LINE L1 -7 6147 3054 16723 86 1 0 chrY 11004411 11006698 -13706381 + L1PA5 LINE L1 768 3056 -3090 549 305 5 43 chrY 11006930 11007117 -13705962 + MIR SINE MIR 36 215 -47 655 165 0 0 chrY 11007126 11007241 -13705838 + L1PB3 LINE L1 6033 6147 -7 33 56 0 0 chrY 11007241 11007295 -13705784 + AT_rich Low_complexity Low_complexity 1 54 0 325 262 27 96 chrY 11007515 11007626 -13705453 + L1M4 LINE L1 3521 3615 -2531 1386 214 34 7 chrY 11007626 11007921 -13705158 - AluJo SINE Alu -5 307 5 325 262 27 96 chrY 11007921 11007996 -13705083 + L1M4 LINE L1 3615 3694 -2452 956 206 34 129 chrY 11008008 11008333 -13704746 + AluSx SINE Alu 2 295 -7 234 229 0 0 chrY 11008369 11008430 -13704649 + L1M4 LINE L1 3693 3753 -2393 27 0 0 0 chrY 11009057 11009084 -13703995 + AT_rich Low_complexity Low_complexity 1 27 0 1904 154 17 0 chrY 11009491 11009789 -13703290 - AluSx SINE Alu -9 303 1 224 222 0 0 chrY 11010496 11010541 -13702538 + GA-rich Low_complexity Low_complexity 1 45 0 2483 162 80 0 chrY 11010948 11011411 -13701668 - LTR26 LTR ERV1 0 603 104 1528 200 3 17 chrY 11012842 11013137 -13699942 - AluJo SINE Alu -21 291 1 2128 255 17 24 chrY 11013231 11013765 -13699314 - MER74A LTR ERVL 0 558 29 410 330 86 39 chrY 11014173 11014709 -13698370 + ERVL LTR ERVL 4578 5138 -626 799 151 20 7 chrY 11014729 11014875 -13698204 + MSTA-int LTR MaLR 1498 1645 -6 1888 170 78 8 chrY 11014880 11015280 -13697799 + MSTA LTR MaLR 1 428 0 219 88 0 0 chrY 11015542 11015576 -13697503 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 1456 145 168 4 chrY 11016017 11016279 -13696800 - AluSx SINE Alu -7 305 1 847 241 21 113 chrY 11018210 11018325 -13694754 + MLT1C LTR MaLR 79 203 -264 4029 163 14 10 chrY 11018325 11019013 -13694066 + LTR8 LTR ERV1 1 691 0 847 241 21 113 chrY 11019013 11019279 -13693800 + MLT1C LTR MaLR 203 425 -42 1782 180 3 0 chrY 11019601 11019896 -13693183 - AluSx SINE Alu -11 301 6 338 106 0 61 chrY 11020754 11020820 -13692259 + Alu SINE Alu 241 302 0 976 178 69 5 chrY 11020830 11021032 -13692047 + MER46A DNA MER2_type 21 235 -1 354 61 0 0 chrY 11021033 11021082 -13691997 + (TG)n Simple_repeat Simple_repeat 2 50 0 3111 136 32 2 chrY 11021097 11021560 -13691519 - MER1A DNA MER1_type 0 529 53 1605 122 4 39 chrY 11021589 11021844 -13691235 - AluY SINE Alu -65 246 1 2069 232 21 23 chrY 11021880 11022398 -13690681 - MER74A LTR ERVL -38 520 4 25 51 0 0 chrY 11022506 11022545 -13690534 + AT_rich Low_complexity Low_complexity 1 39 0 340 275 12 0 chrY 11022900 11022980 -13690099 + MER58A DNA MER1_type 9 89 -18 2900 3 0 0 chrY 11022987 11023298 -13689781 - AluYa5 SINE Alu 0 311 1 343 280 167 0 chrY 11024057 11024189 -13688890 - MER5A DNA MER1_type -1 188 35 674 254 42 0 chrY 11024206 11024399 -13688680 - MER3 DNA MER1_type 0 209 9 1437 210 4 7 chrY 11025366 11025677 -13687402 + AluJo SINE Alu 9 318 0 1576 212 10 0 chrY 11026093 11026263 -13686816 - AluJb SINE Alu -12 300 124 225 0 0 0 chrY 11026263 11026288 -13686791 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 1576 212 10 0 chrY 11026288 11026414 -13686665 - AluJb SINE Alu -188 124 1 1053 60 16 38 chrY 11026485 11026668 -13686411 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 21 0 0 0 chrY 11027029 11027050 -13686029 + AT_rich Low_complexity Low_complexity 1 21 0 2398 148 0 6 chrY 11028861 11029226 -13683853 + THE1B LTR MaLR 1 363 -1 4076 135 30 18 chrY 11030003 11030715 -13682364 - L1PA16 LINE L1 -1 6165 5446 25 51 0 0 chrY 11031854 11031893 -13681186 + AT_rich Low_complexity Low_complexity 1 39 0 243 272 57 63 chrY 11032030 11032188 -13680891 - L1MA10 LINE L1 -7 6327 6171 505 218 24 87 chrY 11032212 11032418 -13680661 - L1ME1 LINE L1 -177 6058 5866 10137 54 11 1 chrY 11032418 11034491 -13678588 - L1PA4 LINE L1 0 6155 4069 4748 50 2 0 chrY 11034494 11035093 -13677986 + L1PA4 LINE L1 3450 4049 -2097 1067 268 92 43 chrY 11035091 11035855 -13677224 - L1ME1 LINE L1 -1053 5162 4362 * 853 274 5 80 chrY 11035939 11036312 -13676767 - L1ME1 LINE L1 -5602 794 450 2164 142 25 35 chrY 11036342 11036407 -13676672 + THE1B LTR MaLR 3 67 -297 2057 56 22 0 chrY 11036407 11036675 -13676404 + L1PA4 LINE L1 5882 6155 0 2164 142 25 35 chrY 11036675 11036975 -13676104 + THE1B LTR MaLR 67 364 0 667 310 91 29 chrY 11036976 11037392 -13675687 - L1ME1 LINE L1 -5915 481 40 1866 158 0 0 chrY 11037405 11037708 -13675371 - AluSc SINE Alu -6 303 1 3229 199 15 13 chrY 11037719 11038059 -13675020 - L1MD1 LINE L1 -10 6232 5894 2082 62 0 4 chrY 11038059 11038315 -13674764 - AluY SINE Alu -4 307 53 3229 199 15 13 chrY 11038315 11038661 -13674418 - L1MD1 LINE L1 -348 5894 5545 40421 61 23 3 chrY 11038691 11044715 -13668364 - L1PA5 LINE L1 0 6154 9 23 0 0 0 chrY 11044724 11044747 -13668332 + AT_rich Low_complexity Low_complexity 1 23 0 2185 181 40 0 chrY 11045653 11046078 -13667001 - L1PB4 LINE L1 -7 6149 5708 1623 196 30 0 chrY 11046820 11047090 -13665989 + AluSg SINE Alu 1 278 -32 326 23 23 0 chrY 11047095 11047138 -13665941 + (TAAAA)n Simple_repeat Simple_repeat 4 47 0 28 48 0 0 chrY 11048419 11048461 -13664618 + AT_rich Low_complexity Low_complexity 1 42 0 2164 121 0 3 chrY 11048731 11049021 -13664058 + AluSg SINE Alu 3 291 -19 2452 59 0 28 chrY 11049246 11049566 -13663513 - AluY SINE Alu 0 311 1 705 207 7 0 chrY 11049566 11049701 -13663378 - FLAM_C SINE Alu -7 136 1 1142 254 3 45 chrY 11050078 11050389 -13662690 + AluJb SINE Alu 1 298 -4 21 0 0 0 chrY 11053642 11053663 -13659416 + AT_rich Low_complexity Low_complexity 1 21 0 11274 133 18 3 chrY 11054082 11056695 -13656384 - L1PA7 LINE L1 -4 6150 3504 3249 209 4 60 chrY 11057302 11057659 -13655420 - LTR39 LTR ERV1 -15 768 392 1521 207 4 0 chrY 11057659 11057929 -13655150 + AluSx SINE Alu 3 273 -39 3249 209 4 60 chrY 11057929 11058221 -13654858 - LTR39 LTR ERV1 -391 392 172 1906 225 171 45 chrY 11058221 11058954 -13654125 - LTR1B LTR ERV1 -1 825 1 3249 209 4 60 chrY 11058954 11059117 -13653962 - LTR39 LTR ERV1 -611 172 1 414 0 0 0 chrY 11059244 11059290 -13653789 + (CA)n Simple_repeat Simple_repeat 2 47 0 3313 115 48 24 chrY 11059299 11059838 -13653241 + MER41A LTR ERV1 3 554 0 1689 178 50 3 chrY 11060069 11060390 -13652689 + L1P3 LINE L1 9 344 -6117 5836 108 25 2 chrY 11060395 11061617 -13651462 + L1PA8 LINE L1 4919 6163 -9 3191 121 4 8 chrY 11061879 11062374 -13650705 - L1PA8 LINE L1 -16 6156 5664 1954 171 26 5 chrY 11062374 11062786 -13650293 + L1P LINE L1 4636 5059 -1087 634 249 17 0 chrY 11062788 11062965 -13650114 - MER4D LTR ERV1 -38 865 686 28 0 0 0 chrY 11064190 11064218 -13648861 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chrY 11064445 11064466 -13648613 + AT_rich Low_complexity Low_complexity 1 21 0 995 272 52 60 chrY 11065512 11066015 -13647064 + MLT1D LTR MaLR 7 505 0 205 367 142 13 chrY 11066015 11066241 -13646838 - L2 LINE L2 -1845 1469 1215 1954 164 3 0 chrY 11066375 11066685 -13646394 + AluSq SINE Alu 1 311 -2 183 80 0 0 chrY 11068446 11068471 -13644608 + (A)n Simple_repeat Simple_repeat 1 25 0 218 312 65 48 chrY 11068510 11068696 -13644383 + L3 LINE CR1 588 776 -801 1697 163 16 23 chrY 11070203 11070509 -13642570 - AluSx SINE Alu -8 304 1 1672 115 56 4 chrY 11070707 11070959 -13642120 + AluY SINE Alu 37 301 -10 1727 167 7 20 chrY 11071596 11071896 -13641183 + AluSq SINE Alu 1 296 -17 218 214 0 14 chrY 11071991 11072061 -13641018 + (TATATG)n Simple_repeat Simple_repeat 4 72 0 252 0 0 0 chrY 11072061 11072089 -13640990 + (CA)n Simple_repeat Simple_repeat 2 29 0 1244 159 91 4 chrY 11072090 11072354 -13640725 - L1PA15 LINE L1 -164 6001 5715 275 229 22 26 chrY 11072358 11072593 -13640486 + (TA)n Simple_repeat Simple_repeat 1 234 0 323 189 40 0 chrY 11072656 11072730 -13640349 + L1P4 LINE L1 5715 5791 -370 239 250 0 12 chrY 11072732 11072812 -13640267 + (TA)n Simple_repeat Simple_repeat 1 79 0 249 159 0 0 chrY 11072840 11072884 -13640195 + (CA)n Simple_repeat Simple_repeat 2 45 0 4187 157 26 42 chrY 11073264 11074279 -13638800 - L1PA15 LINE L1 -1 6164 5163 194 61 0 30 chrY 11074871 11074904 -13638175 + (TTTTA)n Simple_repeat Simple_repeat 4 35 0 945 235 27 71 chrY 11074914 11075208 -13637871 - AluJo SINE Alu -31 281 1 370 200 0 12 chrY 11075248 11075328 -13637751 + MER76 LTR ERV 1 79 -609 1308 189 73 40 chrY 11075328 11075630 -13637449 + AluSx SINE Alu 1 312 0 630 130 16 8 chrY 11075630 11075753 -13637326 + GA-rich Low_complexity Low_complexity 4 127 0 1366 12 24 0 chrY 11075763 11075933 -13637146 + (GAAA)n Simple_repeat Simple_repeat 3 176 0 1296 261 27 43 chrY 11075953 11076168 -13636911 + MER76 LTR ERV 93 299 -389 1614 166 63 30 chrY 11076168 11076530 -13636549 + THE1C LTR MaLR 1 374 -1 1296 261 27 43 chrY 11076530 11076755 -13636324 + MER76 LTR ERV 299 526 -162 601 231 0 0 chrY 11076757 11076874 -13636205 - FLAM_C SINE Alu -26 117 1 339 25 0 0 chrY 11077549 11077589 -13635490 + (GA)n Simple_repeat Simple_repeat 1 40 0 350 234 71 35 chrY 11078212 11078409 -13634670 - LTR15 LTR ERV1 -6 487 284 6287 14 7 0 chrY 11078637 11079354 -13633725 - L1PA2 LINE L1 -4 6151 5430 3089 316 20 44 chrY 11079662 11080849 -13632230 - HERV15 LTR ERV1 -2 8733 7604 2264 92 0 10 chrY 11080849 11081153 -13631926 - AluY SINE Alu -10 301 1 3089 316 20 44 chrY 11081153 11081812 -13631267 - HERV15 LTR ERV1 -1131 7604 6931 2887 249 19 26 chrY 11081831 11082412 -13630667 - HERV15 LTR ERV1 -2376 6359 5784 2780 16 0 0 chrY 11082412 11082721 -13630358 - AluYa8 SINE Alu -1 309 1 2887 249 19 26 chrY 11082721 11082948 -13630131 - HERV15 LTR ERV1 -2951 5784 5557 562 180 20 20 chrY 11083086 11083236 -13629843 + L1MA10 LINE L1 6184 6333 -1 1747 177 18 0 chrY 11083249 11083531 -13629548 + AluSc SINE Alu 1 287 -22 364 124 10 93 chrY 11083547 11083644 -13629435 + L1PA6 LINE L1 6061 6149 -5 2442 169 5 87 chrY 11084316 11084890 -13628189 - LTR26B LTR ERV1 -4 527 1 206 233 0 0 chrY 11085026 11085069 -13628010 + (TATATG)n Simple_repeat Simple_repeat 5 47 0 272 261 6 137 chrY 11085376 11085421 -13627658 - MER106B DNA MER1_type -15 1044 995 1565 198 11 0 chrY 11085421 11085699 -13627380 - AluSx SINE Alu -10 302 22 1263 243 25 0 chrY 11085701 11085985 -13627094 - AluJb SINE Alu -21 291 1 272 261 6 137 chrY 11085985 11086097 -13626982 - MER106B DNA MER1_type -65 994 905 1531 202 11 14 chrY 11086319 11086606 -13626473 + AluJo SINE Alu 4 289 -23 281 248 0 28 chrY 11087436 11087545 -13625534 + CT-rich Low_complexity Low_complexity 1 106 0 561 244 5 7 chrY 11087557 11088005 -13625074 + CT-rich Low_complexity Low_complexity 1 447 0 550 312 50 63 chrY 11088024 11088542 -13624537 - L1MEc LINE L1 -3622 2593 2119 1387 164 67 55 chrY 11088694 11088978 -13624101 - Tigger3(Golem) DNA MER2_type -338 2690 2398 1451 209 3 47 chrY 11088978 11089298 -13623781 - AluJo SINE Alu -6 306 1 1387 164 67 55 chrY 11089298 11089415 -13623664 - Tigger3(Golem) DNA MER2_type -630 2398 2284 27 29 0 0 chrY 11089543 11089577 -13623502 + AT_rich Low_complexity Low_complexity 1 34 0 670 185 0 8 chrY 11089680 11089810 -13623269 - L1MC/D LINE L1 -781 5578 5450 1453 146 79 24 chrY 11089813 11090191 -13622888 - LTR7 LTR ERV1 0 450 1 2392 114 10 12 chrY 11090191 11090596 -13622483 - HERVH LTR ERV1 0 7713 7310 5920 146 12 6 chrY 11090597 11091649 -13621430 - HERVH LTR ERV1 -820 6893 5835 6514 203 26 40 chrY 11091656 11094145 -13618934 - HERVH LTR ERV1 -4197 2457 778 1395 229 118 16 chrY 11094152 11094594 -13618485 - HERVH LTR ERV1 -7226 487 1 1330 190 78 14 chrY 11094594 11094969 -13618110 - LTR7 LTR ERV1 0 450 1 905 218 112 56 chrY 11095016 11095301 -13617778 - AluJb SINE Alu 0 302 2 725 244 37 43 chrY 11095306 11095743 -13617336 - L1MC/D LINE L1 -746 5400 4997 2084 233 43 35 chrY 11095755 11096402 -13616677 - L1PB4 LINE L1 -1 6155 5504 200 108 0 27 chrY 11096402 11096439 -13616640 + (TTC)n Simple_repeat Simple_repeat 1 36 0 1793 177 6 19 chrY 11096439 11096756 -13616323 - AluSq SINE Alu 0 313 1 333 251 6 86 chrY 11096881 11097044 -13616035 - L1MDa LINE L1 -4936 1604 1455 16150 64 3 0 chrY 11097138 11100005 -13613074 - L1PA4 LINE L1 -7 6148 3237 7490 170 33 105 chrY 11100005 11102038 -13611041 - L1PA4 LINE L1 -4249 1897 11 1124 227 47 32 chrY 11102458 11102762 -13610317 - AluJo SINE Alu 0 308 1 4663 183 55 35 chrY 11102891 11103879 -13609200 - LTR13 LTR ERVK 0 1007 1 22 0 0 0 chrY 11104157 11104179 -13608900 + AT_rich Low_complexity Low_complexity 1 22 0 220 114 51 51 chrY 11104252 11104331 -13608748 + (TA)n Simple_repeat Simple_repeat 2 80 0 * 243 117 67 0 chrY 11104274 11104334 -13608745 + (TTATA)n Simple_repeat Simple_repeat 2 65 0 296 293 28 0 chrY 11104465 11104571 -13608508 + HAL1b LINE L1 427 535 -813 330 199 21 14 chrY 11104687 11104781 -13608298 + L1MDb LINE L1 1098 1189 -5217 15986 70 2 1 chrY 11104782 11106878 -13606201 + L1P LINE L1 697 2794 -3352 12715 112 35 3 chrY 11106875 11110772 -13602307 + L1PA6 LINE L1 2017 6151 -3 * 21 36 0 0 chrY 11111024 11111052 -13602027 + AT_rich Low_complexity Low_complexity 1 28 0 198 253 74 95 chrY 11111206 11111301 -13601778 + MIR SINE MIR 20 112 -150 1265 208 55 10 chrY 11111340 11111633 -13601446 + MLT1B LTR MaLR 1 306 -84 213 167 42 0 chrY 11111674 11111722 -13601357 + T-rich Low_complexity Low_complexity 2 51 0 694 35 0 0 chrY 11111731 11111818 -13601261 - L1PA4 LINE L1 -8 6147 6061 1050 189 25 0 chrY 11112479 11112680 -13600399 - MER2 DNA MER2_type -139 206 1 23 54 0 0 chrY 11112896 11112933 -13600146 + AT_rich Low_complexity Low_complexity 1 37 0 378 227 367 0 chrY 11112934 11113062 -13600017 - AluJb SINE Alu -15 287 113 23 0 0 0 chrY 11114595 11114618 -13598461 + AT_rich Low_complexity Low_complexity 1 23 0 24 32 0 0 chrY 11114702 11114733 -13598346 + AT_rich Low_complexity Low_complexity 1 31 0 370 230 12 12 chrY 11116206 11116317 -13596762 + L1MD2 LINE L1 5764 5839 -325 1089 225 62 17 chrY 11116569 11116875 -13596204 + Tigger7 DNA MER2_type 6 2491 0 931 264 12 25 chrY 11117100 11117342 -13595737 + AluJb SINE Alu 1 239 -73 209 106 0 64 chrY 11117537 11117584 -13595495 + (TAAAA)n Simple_repeat Simple_repeat 3 46 0 339 44 0 0 chrY 11118381 11118426 -13594653 + (TA)n Simple_repeat Simple_repeat 2 46 0 1796 207 16 8 chrY 11118427 11118808 -13594271 - MLT1B LTR MaLR -6 384 1 363 252 224 27 chrY 11119056 11119203 -13593876 - MER5A DNA MER1_type -1 188 13 255 266 90 0 chrY 11119344 11119454 -13593625 + MIR SINE MIR 40 159 -49 1363 201 46 21 chrY 11119467 11119751 -13593328 + AluJo SINE Alu 1 291 -21 1514 239 11 17 chrY 11120194 11120550 -13592529 + MER47A DNA MER2_type 12 365 -1 1433 226 31 31 chrY 11120709 11121004 -13592075 + L1MD1 LINE L1 5764 6061 -181 1894 170 138 0 chrY 11121004 11121380 -13591699 + MSTA LTR MaLR 1 428 0 1433 226 31 31 chrY 11121380 11121473 -13591606 + L1MD1 LINE L1 6060 6152 -90 31 82 0 0 chrY 11121491 11121564 -13591515 + AT_rich Low_complexity Low_complexity 1 73 0 996 163 76 0 chrY 11122052 11122069 -13591010 + AluJb SINE Alu 101 115 -197 333 0 0 0 chrY 11122069 11122106 -13590973 + (CA)n Simple_repeat Simple_repeat 2 38 0 996 163 76 0 chrY 11122106 11122260 -13590819 + AluJb SINE Alu 115 285 -27 27389 145 20 48 chrY 11122442 11124337 -13588742 + L1PA7 LINE L1 89 2036 -4118 2034 144 7 0 chrY 11124337 11124642 -13588437 + AluSx SINE Alu 1 307 -5 27389 145 20 48 chrY 11124642 11124673 -13588406 + L1PA7 LINE L1 2036 2066 -4088 3510 60 0 0 chrY 11124673 11125121 -13587958 - L1PA4 LINE L1 -2 6153 5706 27389 145 20 48 chrY 11125121 11128900 -13584179 + L1PA7 LINE L1 2066 5625 -529 3518 108 37 8 chrY 11128900 11129778 -13583301 + LTR13 LTR ERVK 1 1007 0 3246 122 33 2 chrY 11129778 11130293 -13582786 + L1PA7 LINE L1 5620 6150 -4 1706 203 24 11 chrY 11130293 11130668 -13582411 + L1PA16 LINE L1 5773 6157 -9 1136 224 199 6 chrY 11131090 11131447 -13581632 - MSTB LTR MaLR 0 426 1 1323 213 100 69 chrY 11131625 11131749 -13581330 + MLT1C LTR MaLR 3 122 -345 668 134 79 0 chrY 11131749 11131876 -13581203 - MER85 DNA T2_type -2 137 1 1323 213 100 69 chrY 11131876 11132202 -13580877 + MLT1C LTR MaLR 122 467 0 379 264 118 7 chrY 11132369 11132513 -13580566 - MER20 DNA MER1_type -1 218 59 829 151 13 7 chrY 11132514 11132811 -13580268 + L1MA5A LINE L1 5951 6292 -5 26 30 0 0 chrY 11132811 11132844 -13580235 + AT_rich Low_complexity Low_complexity 1 33 0 1358 196 44 22 chrY 11132927 11133202 -13579877 - AluJb SINE Alu -26 286 6 1287 208 18 0 chrY 11133426 11133705 -13579374 - L1PB4 LINE L1 -2 6154 5871 2321 140 0 21 chrY 11133744 11134116 -13578963 - THE1B LTR MaLR 0 364 1 1696 146 32 36 chrY 11134167 11134354 -13578725 - AluSg SINE Alu -3 307 120 1868 201 61 29 chrY 11134354 11134798 -13578281 - LTR22A LTR ERVK 0 458 1 1696 146 32 36 chrY 11134798 11134918 -13578161 - AluSg SINE Alu -190 120 1 1022 200 5 0 chrY 11135481 11135686 -13577393 + L1PB4 LINE L1 5949 6154 -2 23061 61 2 0 chrY 11136850 11139855 -13573224 - L1PA3 LINE L1 -2409 3737 727 12955 52 8 1 chrY 11139855 11142271 -13570808 + L1PA3 LINE L1 3728 6155 0 24 0 0 0 chrY 11142273 11142297 -13570782 + AT_rich Low_complexity Low_complexity 1 24 0 578 185 89 27 chrY 11142450 11142596 -13570483 + AluJo SINE Alu 5 159 -153 747 255 0 0 chrY 11142634 11142795 -13570284 + AluJo SINE Alu 140 300 -2 1376 219 22 4 chrY 11143324 11143594 -13569485 + AluJo SINE Alu 8 282 -30 414 0 0 0 chrY 11143934 11143980 -13569099 + (TTA)n Simple_repeat Simple_repeat 3 48 0 34916 61 2 1 chrY 11143980 11150025 -13563054 - L1PA3 LINE L1 -18 6137 1 25 0 0 0 chrY 11150535 11150560 -13562519 + AT_rich Low_complexity Low_complexity 1 25 0 1676 176 64 20 chrY 11151535 11151881 -13561198 - MLT1B LTR MaLR -29 361 1 566 197 7 0 chrY 11152577 11152714 -13560365 + (TGGA)n Simple_repeat Simple_repeat 1 138 0 1483 211 33 19 chrY 11152717 11153031 -13560048 - MLT2B2 LTR ERVL -24 496 126 1958 181 19 6 chrY 11153031 11153390 -13559689 - THE1B LTR MaLR 0 364 1 1483 211 33 19 chrY 11153390 11153518 -13559561 - MLT2B2 LTR ERVL -394 126 1 327 253 133 32 chrY 11153721 11153879 -13559200 + L1MDa LINE L1 1741 1914 -4626 833 76 8 0 chrY 11154023 11154141 -13558938 + (TAGA)n Simple_repeat Simple_repeat 2 120 0 315 294 49 0 chrY 11154410 11154512 -13558567 - MER94 DNA DNA -2 132 26 1949 153 0 0 chrY 11154552 11154839 -13558240 + AluSg SINE Alu 3 289 -21 627 81 0 0 chrY 11154839 11154925 -13558154 + (GGGAA)n Simple_repeat Simple_repeat 4 89 0 297 0 0 0 chrY 11154926 11154959 -13558120 + (CAAAG)n Simple_repeat Simple_repeat 3 35 0 509 255 0 0 chrY 11155071 11155169 -13557910 + AluJo SINE Alu 1 98 -214 537 114 13 0 chrY 11155169 11155248 -13557831 - THE1C LTR MaLR 0 375 296 1072 67 24 18 chrY 11155248 11155412 -13557667 - L1P LINE L1 -777 5369 5205 5030 30 3 0 chrY 11155412 11155990 -13557089 + L1PA3 LINE L1 5558 6155 0 1851 126 56 3 chrY 11156003 11156305 -13556774 - THE1C LTR MaLR -57 318 1 993 190 5 15 chrY 11156307 11156502 -13556577 + AluJo SINE Alu 96 288 -24 23 0 0 0 chrY 11156509 11156532 -13556547 + AT_rich Low_complexity Low_complexity 1 23 0 360 0 0 0 chrY 11156572 11156612 -13556467 + (CA)n Simple_repeat Simple_repeat 1 40 0 910 61 8 8 chrY 11157331 11157462 -13555617 + (GAAA)n Simple_repeat Simple_repeat 3 133 0 265 174 26 90 chrY 11158741 11158896 -13554183 + (TATAA)n Simple_repeat Simple_repeat 5 149 0 286 351 36 12 chrY 11158920 11159088 -13553991 - MIR SINE MIR -3 259 88 189 0 0 0 chrY 11160357 11160378 -13552701 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1808 139 8 0 chrY 11160380 11160647 -13552432 - AluSc SINE Alu -40 269 1 734 139 26 21 chrY 11160760 11161194 -13551885 + (TAGA)n Simple_repeat Simple_repeat 1 436 0 27 0 0 0 chrY 11162279 11162306 -13550773 + AT_rich Low_complexity Low_complexity 1 27 0 205 235 12 24 chrY 11162515 11162600 -13550479 + (TA)n Simple_repeat Simple_repeat 1 84 0 263 276 152 0 chrY 11163132 11163277 -13549802 + Charlie2a DNA MER1_type 914 1080 -1782 23 97 0 0 chrY 11163304 11163376 -13549703 + AT_rich Low_complexity Low_complexity 1 72 0 2300 83 10 0 chrY 11163620 11163922 -13549157 - AluY SINE Alu -6 305 1 1873 151 0 22 chrY 11164041 11164360 -13548719 - AluSx SINE Alu 0 312 1 2319 104 0 0 chrY 11166344 11166651 -13546428 - AluY SINE Alu -4 307 1 2007 185 26 8 chrY 11166714 11167103 -13545976 - Tigger2 DNA MER2_type -1 2717 2322 24 0 0 0 chrY 11167649 11167673 -13545406 + AT_rich Low_complexity Low_complexity 1 24 0 375 248 14 25 chrY 11167998 11168283 -13544796 + CT-rich Low_complexity Low_complexity 1 281 0 788 260 105 30 chrY 11169367 11169516 -13543563 + LTR48B LTR ERV1 6 143 -501 1689 172 138 24 chrY 11169516 11169899 -13543180 - MSTA LTR MaLR 0 428 2 788 260 105 30 chrY 11169899 11170045 -13543034 + LTR48B LTR ERV1 143 323 -321 188 0 0 69 chrY 11170237 11170266 -13542813 + (TTAA)n Simple_repeat Simple_repeat 3 29 0 1129 171 8 50 chrY 11170266 11170544 -13542535 + LTR29 LTR ERV1 363 651 -2 21 0 0 0 chrY 11171544 11171565 -13541514 + AT_rich Low_complexity Low_complexity 1 21 0 2993 163 42 30 chrY 11171841 11172402 -13540677 - MER39B LTR ERV1 0 653 81 2467 137 0 0 chrY 11172402 11172766 -13540313 + THE1B LTR MaLR 1 364 0 2993 163 42 30 chrY 11172766 11172848 -13540231 - MER39B LTR ERV1 -572 81 2 917 183 52 44 chrY 11174652 11174881 -13538198 + L1M3 LINE L1 5325 5555 -625 2079 198 132 34 chrY 11174881 11175526 -13537553 + LTR1B LTR ERV1 1 740 -86 239 259 69 35 chrY 11175537 11175646 -13537433 + MER39 LTR ERV1 545 657 -50 2175 130 8 117 chrY 11175646 11176115 -13536964 - LTR8 LTR ERV1 0 691 274 343 130 0 0 chrY 11176115 11176169 -13536910 + Alu SINE Alu 1 54 -246 3378 95 15 0 chrY 11176169 11176723 -13536356 - L1PA16 LINE L1 -262 5904 5315 598 223 7 22 chrY 11176830 11176969 -13536110 + AluJo SINE Alu 1 137 -175 239 122 20 0 chrY 11178059 11178108 -13534971 + (TAGA)n Simple_repeat Simple_repeat 1 50 0 335 140 94 41 chrY 11178190 11178331 -13534748 + (TAGA)n Simple_repeat Simple_repeat 1 133 -47 293 100 20 0 chrY 11178331 11178381 -13534698 + (CATA)n Simple_repeat Simple_repeat 2 52 0 424 269 80 76 chrY 11178382 11178921 -13534158 + MER34 LTR ERV1 1 541 -1 335 140 94 41 chrY 11178921 11178948 -13534131 + (TAGA)n Simple_repeat Simple_repeat 132 180 0 623 109 0 43 chrY 11178971 11179109 -13533970 + (TAGA)n Simple_repeat Simple_repeat 3 134 0 28 29 0 0 chrY 11179227 11179262 -13533817 + AT_rich Low_complexity Low_complexity 1 35 0 447 15 0 45 chrY 11179555 11179622 -13533457 + L1PA2 LINE L1 6092 6155 0 2456 47 7 0 chrY 11179631 11179928 -13533151 + AluY SINE Alu 1 299 -12 1663 195 26 0 chrY 11180055 11180357 -13532722 + AluJo SINE Alu 1 310 -2 1997 155 3 0 chrY 11181049 11181352 -13531727 + AluSx SINE Alu 1 304 -8 1285 260 10 0 chrY 11182626 11182930 -13530149 - AluJb SINE Alu -5 307 1 290 226 143 0 chrY 11183037 11183121 -13529958 - MER5B DNA MER1_type 0 178 83 337 128 0 12 chrY 11183520 11183598 -13529481 - MLT2B3 LTR ERVL 0 554 408 716 87 16 49 chrY 11183642 11183825 -13529254 + (TAGA)n Simple_repeat Simple_repeat 2 178 0 603 128 5 53 chrY 11183866 11184053 -13529026 + (TAGA)n Simple_repeat Simple_repeat 1 178 0 1839 171 3 3 chrY 11184190 11184500 -13528579 + AluSx SINE Alu 1 310 -2 3552 147 11 24 chrY 11185386 11186048 -13527031 - MER39B LTR ERV1 0 653 1 741 53 0 0 chrY 11186271 11186365 -13526714 + (CATTG)n Simple_repeat Simple_repeat 2 95 0 981 129 0 14 chrY 11186384 11186531 -13526548 - AluSg/x SINE Alu -45 267 123 572 99 25 16 chrY 11186546 11186667 -13526412 + (TAGA)n Simple_repeat Simple_repeat 1 122 0 198 128 0 0 chrY 11186887 11186926 -13526153 + (TA)n Simple_repeat Simple_repeat 1 39 0 347 253 23 0 chrY 11186927 11187014 -13526065 + L1MC4 LINE L1 6614 6702 -1340 182 179 18 0 chrY 11187059 11187115 -13525964 + (TA)n Simple_repeat Simple_repeat 1 57 0 1269 240 33 0 chrY 11188634 11188932 -13524147 - AluJo SINE Alu 0 307 1 622 219 0 0 chrY 11188944 11189067 -13524012 - AluJb SINE Alu -189 123 1 595 247 44 43 chrY 11189545 11189755 -13523324 + MLT1E1 LTR MaLR 33 247 -407 1532 147 60 7 chrY 11189796 11190156 -13522923 - L1PB4 LINE L1 -600 5556 5184 * 3035 175 5 18 chrY 11190155 11190725 -13522354 + L1PB4 LINE L1 5565 6127 -29 501 173 209 0 chrY 11190727 11190837 -13522242 + FLAM_C SINE Alu 1 133 0 746 58 19 0 chrY 11192316 11192419 -13520660 + (TATTG)n Simple_repeat Simple_repeat 3 107 0 2585 161 0 2 chrY 11192421 11192855 -13520224 - L1PB4 LINE L1 -17 6139 5707 2851 212 52 53 chrY 11192855 11193812 -13519267 + L1MA5 LINE L1 5345 6300 0 21 36 0 0 chrY 11194262 11194290 -13518789 + AT_rich Low_complexity Low_complexity 1 28 0 26 30 0 0 chrY 11194616 11194649 -13518430 + AT_rich Low_complexity Low_complexity 1 33 0 478 139 0 0 chrY 11195061 11195133 -13517946 - THE1C LTR MaLR -303 72 1 313 133 398 24 chrY 11195133 11195216 -13517863 - MER4C LTR ERV1 -50 415 302 1822 124 22 68 chrY 11195285 11195655 -13517424 - MER4A LTR ERV1 -311 353 1 2106 135 0 0 chrY 11196390 11196693 -13516386 + AluSc SINE Alu 1 303 -6 659 213 0 0 chrY 11196701 11196809 -13516270 + FLAM_C SINE Alu 2 108 -35 414 0 0 0 chrY 11196811 11196857 -13516222 + (CA)n Simple_repeat Simple_repeat 1 46 0 425 264 0 0 chrY 11196983 11197070 -13516009 - MIR SINE MIR -103 159 73 2175 215 35 2 chrY 11197079 11197563 -13515516 - L1MC3 LINE L1 -10 7775 7276 459 158 42 11 chrY 11197563 11197658 -13515421 + MER4A LTR ERV1 1 98 -566 1620 173 7 30 chrY 11197708 11198008 -13515071 + MER4A LTR ERV1 372 664 0 950 67 193 0 chrY 11198011 11198161 -13514918 + MER4A-int LTR ERV1 1 179 -6419 482 229 92 0 chrY 11198161 11198302 -13514777 - L1MC4 LINE L1 -517 7268 7129 217 322 0 0 chrY 11198580 11198639 -13514440 - L2 LINE L2 -236 3036 2978 1753 163 3 0 chrY 11198672 11199121 -13513958 + AluSp SINE Alu 1 450 0 275 158 0 18 chrY 11199121 11199178 -13513901 + GA-rich Low_complexity Low_complexity 1 56 0 1527 208 7 7 chrY 11199535 11199824 -13513255 - AluJo SINE Alu -23 289 1 372 144 0 41 chrY 11200196 11200293 -13512786 + (GGGGA)n Simple_repeat Simple_repeat 2 94 0 416 122 0 14 chrY 11200359 11200433 -13512646 + (GGGGA)n Simple_repeat Simple_repeat 3 75 0 497 219 6 18 chrY 11201155 11201324 -13511755 + GA-rich Low_complexity Low_complexity 4 170 0 602 263 3 26 chrY 11201342 11201685 -13511394 + GA-rich Low_complexity Low_complexity 1 335 0 440 171 19 0 chrY 11201699 11201804 -13511275 + GA-rich Low_complexity Low_complexity 3 109 0 201 289 0 0 chrY 11201849 11201946 -13511133 + GA-rich Low_complexity Low_complexity 2 98 0 524 214 8 39 chrY 11201959 11202296 -13510783 + GA-rich Low_complexity Low_complexity 1 326 0 564 95 0 0 chrY 11202353 11202437 -13510642 + (GGAA)n Simple_repeat Simple_repeat 3 86 0 303 280 0 0 chrY 11202451 11202583 -13510496 + GA-rich Low_complexity Low_complexity 2 133 0 255 313 0 0 chrY 11202603 11202670 -13510409 + GA-rich Low_complexity Low_complexity 4 70 0 1069 114 9 8 chrY 11202689 11202926 -13510153 + (GGAA)n Simple_repeat Simple_repeat 1 237 0 286 270 0 14 chrY 11202945 11203093 -13509986 + GA-rich Low_complexity Low_complexity 1 146 0 741 144 0 0 chrY 11203106 11203238 -13509841 + (GGAA)n Simple_repeat Simple_repeat 3 134 0 408 260 0 19 chrY 11203254 11203358 -13509721 + GA-rich Low_complexity Low_complexity 1 102 0 323 252 0 16 chrY 11203372 11203495 -13509584 + GA-rich Low_complexity Low_complexity 4 124 0 556 188 11 28 chrY 11203531 11203712 -13509367 + GA-rich Low_complexity Low_complexity 1 178 0 188 204 37 0 chrY 11203763 11203817 -13509262 + GA-rich Low_complexity Low_complexity 89 144 0 251 286 62 93 chrY 11204463 11204753 -13508326 - L2 LINE L2 -437 2877 2597 1362 190 21 0 chrY 11204866 11205108 -13507971 - AluSx SINE Alu -35 277 31 583 254 89 37 chrY 11205112 11205455 -13507624 - L2 LINE L2 -179 3134 2770 286 288 0 0 chrY 11205470 11205536 -13507543 - MER20 DNA MER1_type -71 148 83 252 307 119 0 chrY 11205730 11205831 -13507248 - L2 LINE L2 -752 2562 2450 492 319 7 0 chrY 11206148 11206286 -13506793 + MER5B DNA MER1_type 2 140 -38 709 236 141 5 chrY 11206350 11206541 -13506538 + MER20 DNA MER1_type 2 218 -1 692 253 18 58 chrY 11207182 11207407 -13505672 + MER20 DNA MER1_type 2 217 -2 385 295 86 0 chrY 11207820 11207925 -13505154 - MER81 DNA DNA 0 114 1 27 29 0 0 chrY 11207980 11208014 -13505065 + AT_rich Low_complexity Low_complexity 1 34 0 203 260 0 0 chrY 11208868 11208918 -13504161 + (CATA)n Simple_repeat Simple_repeat 3 52 0 * 325 251 53 18 chrY 11208890 11208938 -13504141 + (TAGA)n Simple_repeat Simple_repeat 1 46 -131 207 0 0 0 chrY 11208938 11208961 -13504118 + (CA)n Simple_repeat Simple_repeat 2 24 0 325 251 53 18 chrY 11208961 11209083 -13503996 + (TAGA)n Simple_repeat Simple_repeat 46 177 0 1893 156 3 3 chrY 11209188 11209204 -13503875 - AluSx SINE Alu -10 302 287 219 88 0 0 chrY 11209204 11209238 -13503841 + (TTAA)n Simple_repeat Simple_repeat 3 36 0 1893 156 3 3 chrY 11209238 11209523 -13503556 - AluSx SINE Alu -24 288 1 1123 216 18 27 chrY 11209655 11209864 -13503215 + MER58A DNA MER1_type 4 212 -2208 1324 181 32 42 chrY 11209864 11210174 -13502905 + AluJo SINE Alu 1 307 -5 1123 216 18 27 chrY 11210174 11210186 -13502893 + MER58A DNA MER1_type 212 223 -1 246 278 55 46 chrY 11210397 11210506 -13502573 + L1MD2 LINE L1 6242 7990 -5 235 318 65 58 chrY 11211502 11211558 -13501521 + L1ME LINE L1 5562 5616 -505 2095 125 0 13 chrY 11211558 11211863 -13501216 + AluSc SINE Alu 1 301 -8 235 318 65 58 chrY 11211863 11212067 -13501012 + L1ME LINE L1 5616 5824 -297 249 349 60 7 chrY 11212147 11212296 -13500783 - MIR SINE MIR -50 212 56 22 35 0 0 chrY 11212481 11212510 -13500569 + AT_rich Low_complexity Low_complexity 1 29 0 2089 125 23 3 chrY 11212993 11213297 -13499782 - AluSg SINE Alu 0 310 1 1512 207 4 4 chrY 11213586 11213866 -13499213 - AluJo SINE Alu -30 282 3 2007 126 0 3 chrY 11214052 11214345 -13498734 - L1P4 LINE L1 -427 5741 5450 7299 59 7 0 chrY 11216655 11217763 -13495316 + L1PA4 LINE L1 5040 6153 -2 2001 148 3 0 chrY 11218036 11218333 -13494746 + AluSx SINE Alu 1 298 -14 1725 193 7 0 chrY 11219776 11220072 -13493007 - AluSx SINE Alu -9 303 6 285 309 133 62 chrY 11220564 11220949 -13492130 - L2 LINE L2 -539 2775 2364 328 51 0 0 chrY 11221138 11221177 -13491902 + THE1B LTR MaLR 1 39 -336 5200 139 10 40 chrY 11221335 11222462 -13490617 - L1PB1 LINE L1 -24 6127 5029 1453 178 101 43 chrY 11222463 11222789 -13490290 + THE1B LTR MaLR 18 362 -2 235 221 34 40 chrY 11222894 11223043 -13490036 + (TTATA)n Simple_repeat Simple_repeat 1 148 0 2363 268 41 14 chrY 11223061 11223696 -13489383 - MER82 DNA MER2_type -1 652 1 191 364 45 0 chrY 11223729 11223795 -13489284 - L2 LINE L2 -4 3268 3200 2698 168 80 28 chrY 11224475 11225051 -13488028 + L1MB7 LINE L1 5567 6172 -12 2093 121 0 19 chrY 11225223 11225538 -13487541 - AluY SINE Alu -2 309 1 22 0 0 0 chrY 11225564 11225586 -13487493 + AT_rich Low_complexity Low_complexity 1 22 0 1852 165 7 3 chrY 11226424 11226715 -13486364 + AluSx SINE Alu 1 292 -20 1426 211 10 30 chrY 11227269 11227573 -13485506 + AluJb SINE Alu 1 298 -14 2936 13 0 0 chrY 11228181 11228521 -13484558 + AluYb8 SINE Alu 1 340 0 1052 191 22 49 chrY 11228866 11229091 -13483988 - MER20 DNA MER1_type 0 219 1 242 322 46 63 chrY 11230426 11230600 -13482479 + MIR SINE MIR 65 235 -27 1356 210 13 23 chrY 11231353 11231662 -13481417 + AluJb SINE Alu 1 306 -6 28 19 0 56 chrY 11232294 11232348 -13480731 + AT_rich Low_complexity Low_complexity 1 51 0 344 257 37 9 chrY 11232409 11232518 -13480561 - L1ME4a LINE L1 -202 5919 5808 243 216 196 29 chrY 11232531 11232633 -13480446 + MER58B DNA MER1_type 11 129 -212 1320 206 0 43 chrY 11232634 11232887 -13480192 + AluSx SINE Alu 1 242 -70 797 249 56 14 chrY 11232895 11233108 -13479971 + MER58B DNA MER1_type 118 339 -2 314 250 53 8 chrY 11234066 11234198 -13478881 + MER103 DNA DNA 25 162 -4 424 284 36 75 chrY 11234297 11234489 -13478590 + L1 LINE L1 4227 4425 -1721 1562 183 0 36 chrY 11234489 11234795 -13478284 + AluJb SINE Alu 11 305 -7 424 284 36 75 chrY 11234795 11235097 -13477982 + L1 LINE L1 4425 4697 -1449 3136 211 65 18 chrY 11235242 11236078 -13477001 + L1MDa LINE L1 1538 2412 -4128 949 253 18 5 chrY 11236077 11236298 -13476781 - L1MD1 LINE L1 -101 6141 5918 * 353 135 54 0 chrY 11236309 11236383 -13476696 + L1MD1 LINE L1 6163 6240 -2 1951 156 0 0 chrY 11236483 11236778 -13476301 - AluSc SINE Alu -13 296 2 656 289 0 13 chrY 11238091 11238250 -13474829 - MER58A DNA MER1_type 0 158 2 475 204 0 0 chrY 11238838 11238931 -13474148 + AluJ/FRAM SINE Alu 217 309 -3 1572 219 78 61 chrY 11239605 11239868 -13473211 + MER66B LTR ERV1 4 280 -206 2046 154 3 0 chrY 11239868 11240174 -13472905 + AluSx SINE Alu 1 307 -5 1572 219 78 61 chrY 11240174 11240385 -13472694 + MER66B LTR ERV1 280 486 0 334 302 0 0 chrY 11240631 11240717 -13472362 - MER5A DNA MER1_type -84 105 20 218 246 0 49 chrY 11240859 11240920 -13472159 - MER5B DNA MER1_type -8 170 113 1973 213 50 11 chrY 11240971 11241427 -13471652 - L1MB5 LINE L1 -8 6166 5693 185 0 40 0 chrY 11241488 11241513 -13471566 + (TAGA)n Simple_repeat Simple_repeat 4 29 0 270 116 0 0 chrY 11241523 11241566 -13471513 + (CA)n Simple_repeat Simple_repeat 2 44 0 1611 177 20 99 chrY 11241607 11242002 -13471077 + MLT1A1 LTR MaLR 1 364 -1 337 228 0 13 chrY 11242003 11242082 -13470997 - L1MB5 LINE L1 -566 5618 5541 506 196 19 146 chrY 11242215 11242278 -13470801 + MER5A DNA MER1_type 14 47 -142 1598 201 10 0 chrY 11242278 11242571 -13470508 + AluSx SINE Alu 1 296 -16 506 196 19 146 chrY 11242571 11242665 -13470414 + MER5A DNA MER1_type 47 151 -38 324 288 61 34 chrY 11242678 11243004 -13470075 - L1ME4a LINE L1 -187 5934 5600 31 44 0 0 chrY 11243193 11243238 -13469841 + AT_rich Low_complexity Low_complexity 1 45 0 3144 163 89 8 chrY 11244141 11244737 -13468342 + LTR9B LTR ERV1 1 644 0 1753 199 88 32 chrY 11245693 11246126 -13466953 + LTR2B LTR ERV1 32 488 -2 1070 147 0 0 chrY 11246127 11246283 -13466796 + Harlequin LTR ERV1 1 156 -6740 5077 205 13 0 chrY 11246283 11247185 -13465894 + Harlequin LTR ERV1 456 1369 -6444 * 20452 207 8 13 chrY 11247183 11250954 -13462125 + Harlequin LTR ERV1 1480 5233 -2580 4306 133 45 35 chrY 11250950 11251893 -13461186 + pTR5 LTR ERV1 741 2025 -413 * 264 235 0 47 chrY 11251893 11251978 -13461101 + LTR30 LTR ERV1 544 624 -98 32899 109 29 13 chrY 11251978 11257083 -13455996 + HERV9 LTR ERV1 2 4944 -1935 463 164 41 76 chrY 11257084 11257421 -13455658 + HERV9 LTR ERV1 702 1141 -5755 315 200 0 0 chrY 11257417 11257477 -13455602 + HERV9 LTR ERV1 7501 7560 -839 * 4300 147 29 29 chrY 11257482 11259017 -13454062 + HERV9 LTR ERV1 504 8399 0 338 235 31 20 chrY 11259017 11259115 -13453964 + LTR30 LTR ERV1 544 642 -80 1551 101 9 4 chrY 11259118 11259346 -13453733 + pTR5 LTR ERV1 172 400 -2038 * 5357 190 13 13 chrY 11259339 11260317 -13452762 + HERVE LTR ERV1 5229 6206 -1607 * 5708 86 1 1 chrY 11260301 11261047 -13452032 + HERVE LTR ERV1 6151 6896 0 1912 207 89 20 chrY 11261047 11261505 -13451574 + LTR2B LTR ERV1 1 490 0 1497 174 10 34 chrY 11261539 11261837 -13451242 + AluJo SINE Alu 13 303 -9 236 133 0 44 chrY 11262054 11262099 -13450980 + L1MC4 LINE L1 6658 6700 -1342 1848 160 3 3 chrY 11262636 11262924 -13450155 + AluSx SINE Alu 8 295 -17 597 90 0 0 chrY 11262925 11263014 -13450065 + (AGATG)n Simple_repeat Simple_repeat 1 89 0 1467 220 78 50 chrY 11263568 11264031 -13449048 + MER39 LTR ERV1 232 707 0 916 192 7 172 chrY 11264143 11264337 -13448742 - MLT1A1 LTR MaLR 0 365 288 458 115 11 103 chrY 11264337 11264386 -13448693 - MADE1 DNA Mariner 0 80 41 2193 98 0 44 chrY 11264386 11264703 -13448376 + AluY SINE Alu 1 303 -8 458 115 11 103 chrY 11264703 11264740 -13448339 - MADE1 DNA Mariner -39 41 2 916 192 7 172 chrY 11264740 11264988 -13448091 - MLT1A1 LTR MaLR -77 288 1 1768 167 31 0 chrY 11265592 11265880 -13447199 + AluSq SINE Alu 1 297 -16 2763 153 80 101 chrY 11265905 11266410 -13446669 - Tigger3(Golem) DNA MER2_type 0 3028 2543 1760 179 3 0 chrY 11266410 11266695 -13446384 - AluSx SINE Alu -24 288 3 2763 153 80 101 chrY 11266695 11266949 -13446130 - Tigger3(Golem) DNA MER2_type -485 2543 2285 431 289 10 0 chrY 11266945 11267049 -13446030 - Tigger3(Golem) DNA MER2_type -2924 105 1 * 1413 266 37 37 chrY 11267086 11267600 -13445479 - LTR40a LTR ERVL 0 519 6 264 68 45 0 chrY 11268418 11268462 -13444617 - L1PA7 LINE L1 -1 6153 6108 219 224 0 0 chrY 11268588 11268637 -13444442 + GA-rich Low_complexity Low_complexity 2 50 0 59 0 0 0 chrY 11268926 11268985 -13444094 + AT_rich Low_complexity Low_complexity 1 59 0 199 102 20 20 chrY 11268985 11269034 -13444045 + (TA)n Simple_repeat Simple_repeat 2 50 0 289 148 49 33 chrY 11269047 11269169 -13443910 + (TTATA)n Simple_repeat Simple_repeat 1 124 0 2010 259 11 45 chrY 11269412 11269973 -13443106 + MLT1F LTR MaLR 1 542 0 2129 167 28 0 chrY 11270218 11270572 -13442507 - THE1B LTR MaLR 0 364 1 342 230 18 35 chrY 11270799 11270912 -13442167 + L1ME LINE L1 5713 5823 -298 1236 217 11 4 chrY 11271004 11271276 -13441803 - AluJo SINE Alu -28 284 11 246 277 0 0 chrY 11271474 11271521 -13441558 - MLT1F1 LTR MaLR -218 349 303 269 200 40 40 chrY 11274123 11274198 -13438881 - MIR SINE MIR -80 182 108 213 229 0 0 chrY 11274279 11274327 -13438752 + MIR SINE MIR 106 153 -109 269 243 43 0 chrY 11274335 11274405 -13438674 - MIR SINE MIR -95 167 95 1597 195 31 0 chrY 11274566 11274858 -13438221 + AluSx SINE Alu 9 309 -3 1504 188 16 44 chrY 11276166 11276486 -13436593 - AluJb SINE Alu -1 311 1 288 0 0 0 chrY 11279023 11279055 -13434024 + (TTTA)n Simple_repeat Simple_repeat 4 35 0 1272 177 0 102 chrY 11279214 11279519 -13433560 - AluJo SINE Alu -27 285 12 767 218 41 23 chrY 11279528 11279748 -13433331 - MER20B DNA MER1_type -23 760 537 951 201 32 27 chrY 11279805 11280024 -13433055 + AluJo SINE Alu 87 306 -6 369 277 34 8 chrY 11280358 11280477 -13432602 - MER20B DNA MER1_type -319 464 343 1855 176 3 0 chrY 11281255 11281561 -13431518 - AluSx SINE Alu 0 307 1 785 136 72 16 chrY 11281592 11281717 -13431362 - FLAM_C SINE Alu -1 132 1 1334 228 82 11 chrY 11282735 11282856 -13430223 + AluJo SINE Alu 1 112 -190 312 27 0 0 chrY 11282856 11282893 -13430186 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 1334 228 82 11 chrY 11282893 11283052 -13430027 + AluJo SINE Alu 112 301 -1 559 186 23 28 chrY 11283052 11283229 -13429850 + GA-rich Low_complexity Low_complexity 2 177 0 304 202 71 125 chrY 11284571 11284739 -13428340 + HAL1 LINE L1 2347 2505 -2 202 274 113 0 chrY 11284770 11284832 -13428247 + L2 LINE L2 2679 2747 -567 307 328 25 16 chrY 11285542 11285664 -13427415 + MER5A DNA MER1_type 61 183 -6 445 291 57 48 chrY 11285711 11285921 -13427158 - L3 LINE CR1 -87 1490 1279 257 235 25 12 chrY 11285935 11286016 -13427063 + (TA)n Simple_repeat Simple_repeat 2 83 0 190 154 45 27 chrY 11286090 11286200 -13426879 + (TA)n Simple_repeat Simple_repeat 1 112 0 242 186 6 58 chrY 11286255 11286411 -13426668 + (TA)n Simple_repeat Simple_repeat 1 148 0 225 109 87 11 chrY 11286455 11286547 -13426532 + (CTATA)n Simple_repeat Simple_repeat 2 100 0 317 152 38 89 chrY 11286550 11286708 -13426371 + (CATATA)n Simple_repeat Simple_repeat 3 152 0 237 136 23 91 chrY 11286733 11286821 -13426258 + Charlie7 DNA MER1_type 2465 2546 -66 1414 196 53 0 chrY 11286900 11287166 -13425913 - AluJo SINE Alu -28 284 5 192 182 0 0 chrY 11287173 11287206 -13425873 - L3 LINE CR1 -308 1269 1237 1400 167 0 5 chrY 11287228 11287449 -13425630 - AluSx SINE Alu -87 225 6 439 155 0 0 chrY 11287453 11287524 -13425555 - L1MB5 LINE L1 -310 5864 5794 2124 201 11 0 chrY 11287850 11288229 -13424850 - Tigger2 DNA MER2_type -1 2717 2335 1995 204 12 29 chrY 11288411 11288827 -13424252 + Tigger2a DNA MER2_type 7 415 -19 1613 152 86 20 chrY 11289606 11289908 -13423171 + MER84 LTR ERVI 1 322 -185 786 192 22 33 chrY 11289961 11290143 -13422936 + MLT2B1 LTR ERVL 1 180 -340 1469 205 7 14 chrY 11290738 11291021 -13422058 - AluJo SINE Alu -26 286 6 982 282 105 67 chrY 11291151 11291584 -13421495 + MER21B LTR ERV1 3 477 -386 1423 203 6 37 chrY 11291584 11291905 -13421174 - AluJo SINE Alu -1 311 1 982 282 105 67 chrY 11291905 11292192 -13420887 + MER21B LTR ERV1 477 751 -112 1986 132 42 45 chrY 11292210 11292544 -13420535 + THE1B LTR MaLR 32 364 0 2116 191 116 98 chrY 11292582 11293296 -13419783 + LTR8A LTR ERV1 1 727 0 314 293 112 0 chrY 11293302 11293418 -13419661 - MIR SINE MIR -108 154 26 339 25 0 0 chrY 11293422 11293462 -13419617 + (TTA)n Simple_repeat Simple_repeat 2 41 0 800 223 0 122 chrY 11293492 11293720 -13419359 - AluJo SINE Alu -91 221 24 2069 128 7 0 chrY 11293720 11294017 -13419062 + AluY SINE Alu 1 299 -12 800 223 0 122 chrY 11294017 11294035 -13419044 - AluJo SINE Alu -288 24 5 258 219 201 93 chrY 11294884 11295163 -13417916 - LTR16C LTR ERVL -4 487 179 1818 175 7 7 chrY 11295380 11295683 -13417396 - AluSg SINE Alu -7 303 1 589 189 5 84 chrY 11296420 11296610 -13416469 - MER33 DNA MER1_type -1 362 188 700 269 19 0 chrY 11296610 11296770 -13416309 - FAM SINE Alu -12 163 1 528 182 19 163 chrY 11296770 11296905 -13416174 - MER33 DNA MER1_type -2412 173 74 3427 206 35 3 chrY 11296905 11297555 -13415524 - LTR51 LTR ERV1 0 671 1 528 182 19 163 chrY 11297555 11297613 -13415466 - MER33 DNA MER1_type -2511 74 9 1267 253 74 39 chrY 11298054 11298513 -13414566 - MLT1D LTR MaLR -2 503 29 225 0 0 0 chrY 11298530 11298555 -13414524 + (T)n Simple_repeat Simple_repeat 1 25 0 29 0 0 0 chrY 11299409 11299438 -13413641 + AT_rich Low_complexity Low_complexity 1 29 0 1448 207 18 0 chrY 11299438 11299713 -13413366 - AluJo SINE Alu -30 282 3 1813 163 0 10 chrY 11299859 11300154 -13412925 - AluY SINE Alu -11 300 9 226 333 40 0 chrY 11300553 11300628 -13412451 - L2 LINE L2 -61 3252 3175 240 382 0 36 chrY 11301036 11301146 -13411933 - L2 LINE L2 -11 3302 3197 708 171 7 23 chrY 11301156 11301462 -13411617 + (ATGGTG)n Simple_repeat Simple_repeat 1 300 0 268 286 0 12 chrY 11301466 11301485 -13411594 + (TGG)n Simple_repeat Simple_repeat 1 19 -64 1815 202 86 21 chrY 11301485 11301857 -13411222 - MSTD LTR MaLR 0 396 1 268 286 0 12 chrY 11301857 11301921 -13411158 + (TGG)n Simple_repeat Simple_repeat 19 83 0 245 352 33 0 chrY 11302028 11302119 -13410960 - L2 LINE L2 -239 3074 2981 291 269 113 75 chrY 11302724 11302910 -13410169 + LTR16A1 LTR ERVL 1 193 -264 1565 300 18 9 chrY 11302917 11303373 -13409706 - MLT1G LTR MaLR 0 590 131 614 210 24 17 chrY 11303373 11304005 -13409074 + L1MB3 LINE L1 5373 6117 -66 2162 136 60 28 chrY 11304005 11304358 -13408721 + THE1B LTR MaLR 1 364 0 614 210 24 17 chrY 11304358 11304423 -13408656 + L1MB3 LINE L1 6117 6180 -3 375 290 19 0 chrY 11304446 11304553 -13408526 - MLT1G LTR MaLR -457 133 25 838 222 12 0 chrY 11304568 11304735 -13408344 - AluJo SINE Alu -23 289 121 700 247 7 0 chrY 11304871 11305017 -13408062 + MLT1A1 LTR MaLR 159 305 -60 543 31 0 0 chrY 11305102 11305167 -13407912 + (TTTTC)n Simple_repeat Simple_repeat 2 66 0 2257 128 5 53 chrY 11305172 11305546 -13407533 - L1PB1 LINE L1 -2 6149 5794 3618 86 94 0 chrY 11305547 11306196 -13406883 + L1PB1 LINE L1 5116 5806 -348 549 152 105 110 chrY 11306294 11306485 -13406594 + LTR49 LTR ERV1 406 595 0 233 119 24 0 chrY 11306936 11306978 -13406101 + MADE1 DNA Mariner 1 43 -37 760 301 32 0 chrY 11306992 11307241 -13405838 - L1MB7 LINE L1 -67 6117 5861 * 35129 115 12 17 chrY 11307237 11313429 -13399650 - L1PA6 LINE L1 0 6154 11 362 100 0 0 chrY 11313438 11313488 -13399591 + MADE1 DNA Mariner 31 80 0 187 377 66 0 chrY 11315713 11315819 -13397260 + MIR SINE MIR 39 151 -57 712 256 10 10 chrY 11315864 11316059 -13397020 + L1MEc LINE L1 35 229 -6167 1301 253 35 29 chrY 11316083 11316458 -13396621 + L1MEc LINE L1 466 842 -5554 1939 243 90 46 chrY 11316519 11317644 -13395435 - L1 LINE L1 -1083 5063 3814 689 250 29 39 chrY 11319397 11319601 -13393478 + MER20 DNA MER1_type 3 204 -15 243 246 35 0 chrY 11319618 11319675 -13393404 + MER20 DNA MER1_type 161 219 0 462 79 0 0 chrY 11320266 11320329 -13392750 + (TA)n Simple_repeat Simple_repeat 2 64 0 619 0 0 47 chrY 11320797 11320840 -13392239 + (TCTA)n Simple_repeat Simple_repeat 1 121 0 619 0 0 47 chrY 11320840 11320925 -13392154 + (TCTA)n Simple_repeat Simple_repeat 4 84 0 2393 114 8 75 chrY 11323013 11323400 -13389679 + THE1B LTR MaLR 1 361 -3 257 249 150 51 chrY 11325164 11325410 -13387669 + MER34 LTR ERV1 368 535 -7 1917 151 23 0 chrY 11325864 11326169 -13386910 - AluSx SINE Alu 0 312 1 1380 194 17 50 chrY 11327071 11327370 -13385709 - AluJb SINE Alu -15 297 9 25 0 0 0 chrY 11327707 11327732 -13385347 + AT_rich Low_complexity Low_complexity 1 25 0 28638 137 12 64 chrY 11328182 11332941 -13380138 - L1PA7 LINE L1 -1 6153 1829 5622 35 2 0 chrY 11332941 11333563 -13379516 - L1PA3 LINE L1 -6 6149 5527 28638 137 12 64 chrY 11333563 11335301 -13377778 - L1PA7 LINE L1 -4325 1829 2 568 236 8 8 chrY 11336198 11336321 -13376758 - FLAM_C SINE Alu -17 126 4 865 208 0 12 chrY 11336321 11336494 -13376585 + AluJo/FRAM SINE Alu 137 307 -5 1614 271 56 60 chrY 11337157 11337346 -13375733 + MER21B LTR ERV1 1 189 -674 1695 165 18 4 chrY 11337346 11337648 -13375431 + AluSx SINE Alu 1 306 0 1614 271 56 60 chrY 11337648 11338021 -13375058 + MER21B LTR ERV1 189 563 -300 1928 154 3 3 chrY 11338021 11338320 -13374759 - AluSx SINE Alu -13 299 1 1614 271 56 60 chrY 11338320 11338493 -13374586 + MER21B LTR ERV1 563 735 -128 225 0 0 0 chrY 11338576 11338601 -13374478 + (A)n Simple_repeat Simple_repeat 1 25 0 3214 239 82 43 chrY 11340859 11342208 -13370871 + L1M4 LINE L1 2341 3742 -2404 488 294 35 10 chrY 11342211 11342408 -13370671 + Charlie7 DNA MER1_type 1932 2133 -479 252 0 0 0 chrY 11342412 11342440 -13370639 + (TA)n Simple_repeat Simple_repeat 1 28 0 1003 161 11 22 chrY 11342443 11342623 -13370456 + AluSg/x SINE Alu 133 310 0 522 270 83 19 chrY 11342658 11342853 -13370226 + Charlie7 DNA MER1_type 2219 2400 -212 1433 214 34 0 chrY 11342853 11343148 -13369931 - AluJo SINE Alu -7 305 1 522 270 83 19 chrY 11343148 11343315 -13369764 + Charlie7 DNA MER1_type 2400 2604 -8 216 307 68 11 chrY 11343413 11343501 -13369578 + MIR SINE MIR 81 173 -89 763 257 120 51 chrY 11344624 11345056 -13368023 + MLT1C LTR MaLR 6 467 0 1286 140 104 107 chrY 11345448 11345584 -13367495 + AluSg1 SINE Alu 1 136 -173 2017 116 24 0 chrY 11345584 11345877 -13367202 + AluY SINE Alu 1 300 -11 1286 140 104 107 chrY 11345877 11345892 -13367187 + AluSg1 SINE Alu 136 150 -159 2286 65 0 0 chrY 11345892 11346171 -13366908 + AluY SINE Alu 1 279 -32 189 0 0 0 chrY 11346171 11346192 -13366887 + (CAAT)n Simple_repeat Simple_repeat 4 24 0 1286 140 104 107 chrY 11346192 11346346 -13366733 + AluSg1 SINE Alu 148 307 -2 183 156 0 0 chrY 11347039 11347071 -13366008 + L2 LINE L2 3265 3296 -17 831 196 23 0 chrY 11347124 11347297 -13365782 + L1MA8 LINE L1 6110 6286 -5 2039 198 90 28 chrY 11348181 11348691 -13364388 + MER67A LTR ERV1 1 542 -1 1568 197 92 32 chrY 11349553 11349990 -13363089 + MLT1C LTR MaLR 5 467 0 541 254 0 8 chrY 11350726 11350848 -13362231 - AluSq/x SINE Alu -177 136 16 266 358 34 6 chrY 11352141 11352317 -13360762 + MER58B DNA MER1_type 120 300 -41 25 0 0 0 chrY 11352899 11352924 -13360155 + AT_rich Low_complexity Low_complexity 1 25 0 1918 163 3 16 chrY 11353845 11354023 -13359056 - AluSx SINE Alu -1 311 137 2852 6 0 6 chrY 11354023 11354334 -13358745 - AluYa5 SINE Alu -2 309 1 1918 163 3 16 chrY 11354334 11354468 -13358611 - AluSx SINE Alu -175 137 3 1330 157 25 4 chrY 11355645 11355887 -13357192 - L1MB3 LINE L1 -13 6170 5924 1167 146 73 16 chrY 11355888 11356080 -13356999 + MER51A LTR ERV1 1 203 -431 1291 201 53 27 chrY 11356461 11356760 -13356319 + AluJb SINE Alu 1 307 -5 216 349 28 9 chrY 11357462 11357571 -13355508 + MIR SINE MIR 2 112 -150 1434 193 6 55 chrY 11358827 11359138 -13353941 + AluJo SINE Alu 1 296 -16 553 187 65 0 chrY 11359261 11359384 -13353695 - MLT2B1 LTR ERVL -364 156 26 8136 131 68 16 chrY 11360142 11363117 -13349962 + L1PA6 LINE L1 469 3289 -2865 8136 146 48 0 chrY 11363117 11365534 -13347545 + L1PA6 LINE L1 3660 6153 -1 8136 131 68 16 chrY 11365534 11365549 -13347530 + L1PA6 LINE L1 3289 6153 -1 623 258 18 0 chrY 11365862 11366025 -13347054 - MLT1A1 LTR MaLR -1 364 199 189 107 0 0 chrY 11367870 11367898 -13345181 + (CA)n Simple_repeat Simple_repeat 1 28 0 4610 193 106 71 chrY 11368421 11369072 -13344007 + L1MB2 LINE L1 3226 3853 -2318 811 140 0 0 chrY 11369072 11369186 -13343893 + AluSg/x SINE Alu 181 294 -16 4610 193 106 71 chrY 11369186 11371006 -13342073 + L1MB2 LINE L1 3853 5910 -261 1768 136 55 0 chrY 11371006 11371278 -13341801 - AluSx SINE Alu -25 287 1 4610 193 106 71 chrY 11371278 11371518 -13341561 + L1MB2 LINE L1 5910 6140 -31 1481 210 31 7 chrY 11374518 11374808 -13338271 + AluSx SINE Alu 1 297 -15 507 205 55 39 chrY 11375651 11375778 -13337301 - AluJb SINE Alu -182 130 2 1801 152 99 18 chrY 11376728 11377071 -13336008 + THE1C LTR MaLR 1 371 -4 3786 119 174 3 chrY 11377460 11378161 -13334918 - pTR5 LTR ERV1 0 2468 1520 3356 90 18 20 chrY 11378156 11378646 -13334433 - HERV17 LTR ERV1 -155 8244 7756 * 843 139 0 0 chrY 11378640 11378777 -13334302 - HERV17 LTR ERV1 -5176 1720 1584 * 1765 115 54 0 chrY 11378754 11379033 -13334046 - HERV17 LTR ERV1 -3380 4405 1275 * 1821 108 8 106 chrY 11379020 11379417 -13333662 - HERV17 LTR ERV1 -7577 1049 692 27370 118 15 9 chrY 11379423 11384259 -13328820 - HERV17 LTR ERV1 -3445 4954 1 4038 127 176 47 chrY 11384259 11384990 -13328089 - LTR12 LTR ERV1 0 826 1 39 22 0 0 chrY 11385104 11385150 -13327929 + AT_rich Low_complexity Low_complexity 1 46 0 1440 202 50 0 chrY 11385478 11385760 -13327319 - AluJo SINE Alu -16 296 1 340 256 13 0 chrY 11386577 11386655 -13326424 + MER5A DNA MER1_type 4 82 -107 2272 158 23 33 chrY 11386655 11387084 -13325995 - MSTC LTR MaLR 0 428 4 531 209 36 0 chrY 11387087 11387197 -13325882 + MER5A DNA MER1_type 76 189 0 963 271 34 4 chrY 11388515 11388781 -13324298 - MER89 LTR ERV1 0 559 286 1891 218 34 14 chrY 11389205 11389623 -13323456 + MSTB LTR MaLR 1 426 0 7245 216 42 2 chrY 11389664 11391147 -13321932 + MSTB-int LTR MaLR 110 1651 0 767 186 7 7 chrY 11391147 11391287 -13321792 + MSTB LTR MaLR 1 140 -286 1710 137 196 14 chrY 11391290 11391703 -13321376 + LTR14B LTR ERVK 1 608 0 10960 110 15 1 chrY 11391703 11393234 -13319845 + HERVK14 LTR ERVK 1 1553 -4392 11203 95 13 40 chrY 11393237 11394398 -13318681 + HERVK14 LTR ERVK 3976 4983 -962 2353 91 3 0 chrY 11394398 11394695 -13318384 + AluY SINE Alu 3 300 -11 11203 95 13 40 chrY 11394695 11395237 -13317842 + HERVK14 LTR ERVK 4983 5538 -407 1207 202 0 5 chrY 11395239 11395452 -13317627 + PRIMA41-int LTR ERV1 7545 7756 0 * 1513 112 0 0 chrY 11395267 11395472 -13317607 + HERVK14 LTR ERVK 5575 5779 -166 461 261 43 48 chrY 11395465 11395653 -13317426 + HERVK LTR ERVK 7054 7240 -3 * 1633 144 214 12 chrY 11395658 11396067 -13317012 + LTR14B LTR ERVK 1 608 0 324 202 0 50 chrY 11396067 11396160 -13316919 + MSTA LTR MaLR 136 222 -206 1449 90 20 0 chrY 11396160 11396361 -13316718 - HERVK14 LTR ERVK -1734 4211 4007 823 201 57 0 chrY 11396361 11396556 -13316523 + MSTA LTR MaLR 222 457 0 24887 52 2 2 chrY 11397504 11403244 -13309835 + L1PA3 LINE L1 416 6154 -1 22 0 0 0 chrY 11403843 11403865 -13309214 + AT_rich Low_complexity Low_complexity 1 22 0 300 177 61 134 chrY 11404212 11404376 -13308703 + L1ME1 LINE L1 5146 5297 -849 860 212 93 21 chrY 11404394 11404810 -13308269 + MLT1D LTR MaLR 12 501 -4 1153 256 85 59 chrY 11404817 11405395 -13307684 + L1ME1 LINE L1 5569 6161 -5 1409 216 14 31 chrY 11406125 11406417 -13306662 + AluJo SINE Alu 2 288 -14 1008 102 0 0 chrY 11406418 11406565 -13306514 + (TA)n Simple_repeat Simple_repeat 2 148 0 503 252 181 11 chrY 11407568 11407917 -13305162 + L1M4c LINE L1 2005 2412 -3972 491 138 0 0 chrY 11407917 11407997 -13305082 + AluS SINE Alu 231 310 -1 2653 231 20 58 chrY 11408013 11408919 -13304160 + L1M4c LINE L1 2399 3269 -3113 585 183 139 22 chrY 11408923 11409060 -13304019 + MLT1D LTR MaLR 235 387 -118 235 174 0 0 chrY 11409083 11409129 -13303950 + MLT1D LTR MaLR 581 626 0 1813 187 89 6 chrY 11409467 11409825 -13303254 - MLT1B LTR MaLR -2 388 1 204 40 0 0 chrY 11409851 11409876 -13303203 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1804 164 10 3 chrY 11411073 11411365 -13301714 - AluSx SINE Alu -18 294 1 192 324 0 14 chrY 11412463 11412537 -13300542 - L2 LINE L2 -50 3263 3191 189 0 0 0 chrY 11412915 11412936 -13300143 + (A)n Simple_repeat Simple_repeat 1 21 0 180 97 0 0 chrY 11413447 11413478 -13299601 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1864 185 0 0 chrY 11413627 11413929 -13299150 + AluSx SINE Alu 10 311 -1 2950 120 17 19 chrY 11413950 11414415 -13298664 + LTR15 LTR ERV1 14 477 -16 7155 161 26 20 chrY 11414431 11415734 -13297345 + HERV15 LTR ERV1 1 1124 -7302 1236 267 45 9 chrY 11415736 11416066 -13297013 + HERV15 LTR ERV1 1046 1387 -7039 731 264 23 6 chrY 11416056 11416230 -13296849 + HERV15 LTR ERV1 1704 1880 -6546 * 4334 217 17 0 chrY 11416220 11417032 -13296047 + HERV3 LTR ERV1 4600 5425 -3001 40623 57 24 1 chrY 11417032 11423043 -13290036 + L1PA3 LINE L1 7 6155 0 225 119 0 0 chrY 11423053 11423095 -13289984 + (A)n Simple_repeat Simple_repeat 1 42 0 2026 202 0 0 chrY 11423104 11423445 -13289634 + HERV3 LTR ERV1 5414 5754 -2672 353 164 0 0 chrY 11423446 11423501 -13289578 + Alu SINE Alu 1 55 -244 8334 119 16 13 chrY 11423503 11425295 -13287784 + HERV3 LTR ERV1 504 8399 0 1725 91 29 0 chrY 11425295 11425519 -13287560 + pTR5 LTR ERV1 175 405 -2033 19373 99 8 5 chrY 11425512 11428153 -13284926 + HERV3 LTR ERV1 6086 8734 -1 2738 106 24 62 chrY 11428153 11428607 -13284472 + LTR15 LTR ERV1 1 437 -56 264 42 28 56 chrY 11428607 11428678 -13284401 + (TTA)n Simple_repeat Simple_repeat 1 69 0 182 160 20 0 chrY 11428681 11428731 -13284348 + (CTAA)n Simple_repeat Simple_repeat 2 52 0 364 91 36 0 chrY 11428740 11428795 -13284284 + LTR15 LTR ERV1 421 477 -16 746 207 61 28 chrY 11429165 11429378 -13283701 + MLT1D LTR MaLR 1 220 -285 576 198 19 0 chrY 11430318 11430424 -13282655 - LTR9B LTR ERV1 0 644 537 668 13 0 0 chrY 11430424 11430499 -13282580 - L1PA5 LINE L1 -369 5785 5711 3119 55 3 3 chrY 11430499 11430908 -13282171 + L1PA5 LINE L1 5785 6154 0 2845 160 87 4 chrY 11430908 11431414 -13281665 - LTR9B LTR ERV1 -96 548 1 275 271 178 50 chrY 11434360 11434663 -13278416 - L1MC4 LINE L1 -209 7833 7492 239 318 85 0 chrY 11434916 11435045 -13278034 - L1MC4a LINE L1 -648 7160 7021 339 184 41 41 chrY 11435185 11435283 -13277796 - L1MD3 LINE L1 -1132 6863 6766 1844 134 22 0 chrY 11436258 11436527 -13276552 - AluSx SINE Alu -17 295 21 518 215 107 28 chrY 11437178 11437355 -13275724 - MER3 DNA MER1_type -18 191 1 13047 157 37 16 chrY 11438660 11438739 -13274340 + Tigger1 DNA MER2_type 30 106 -2312 1964 143 7 0 chrY 11438739 11439025 -13274054 - AluSx SINE Alu -14 298 11 13047 157 37 16 chrY 11439025 11440889 -13272190 + Tigger1 DNA MER2_type 106 2034 -384 1731 136 0 88 chrY 11440889 11441227 -13271852 - AluSx SINE Alu 0 311 1 13047 157 37 16 chrY 11441227 11441621 -13271458 + Tigger1 DNA MER2_type 2034 2418 0 21 36 0 0 chrY 11443210 11443238 -13269841 + AT_rich Low_complexity Low_complexity 1 28 0 931 233 76 10 chrY 11443396 11443697 -13269382 + MER33 DNA MER1_type 4 324 0 312 230 0 27 chrY 11445169 11445243 -13267836 + MIR SINE MIR 60 131 -77 543 245 33 66 chrY 11445724 11445936 -13267143 - MER20 DNA MER1_type -13 206 2 3302 177 30 7 chrY 11446015 11446580 -13266499 + LTR22 LTR ERVK 3 580 0 2150 133 3 0 chrY 11448034 11448342 -13264737 + AluSx SINE Alu 1 309 -3 705 156 14 71 chrY 11448354 11448495 -13264584 + BC200 scRNA scRNA 10 142 -58 1561 199 15 81 chrY 11448844 11449250 -13263829 - MLT1B LTR MaLR 0 390 12 180 231 0 92 chrY 11450188 11450253 -13262826 + MIR3 SINE MIR 101 159 -49 333 232 0 12 chrY 11450667 11450749 -13262330 + MER5A DNA MER1_type 24 104 -85 1500 196 37 17 chrY 11450907 11451203 -13261876 - AluSx SINE Alu -10 302 1 288 232 128 16 chrY 11451308 11451433 -13261646 + Charlie7 DNA MER1_type 279 417 -2195 342 278 11 27 chrY 11451813 11452384 -13260695 + CT-rich Low_complexity Low_complexity 1 562 0 231 401 14 14 chrY 11452859 11453001 -13260078 - MIR SINE MIR -70 192 51 769 219 63 44 chrY 11454017 11454184 -13258895 - MER6B DNA MER2_type -656 209 36 1621 192 31 3 chrY 11454184 11454470 -13258609 + AluJb SINE Alu 1 294 -18 769 219 63 44 chrY 11454470 11454507 -13258572 - MER6B DNA MER2_type -829 36 1 333 0 0 0 chrY 11454571 11454608 -13258471 + (T)n Simple_repeat Simple_repeat 1 37 0 2054 157 3 0 chrY 11455050 11455350 -13257729 + AluSx SINE Alu 1 301 -11 334 275 55 9 chrY 11456156 11456265 -13256814 - MIR SINE MIR -124 138 25 243 0 0 0 chrY 11457339 11457366 -13255713 + (TG)n Simple_repeat Simple_repeat 2 28 0 1455 218 29 0 chrY 11457376 11457651 -13255428 - AluJo SINE Alu -27 285 3 195 42 0 0 chrY 11457813 11457837 -13255242 + (ATTG)n Simple_repeat Simple_repeat 1 24 0 1198 198 10 21 chrY 11458570 11458858 -13254221 + L1MA7 LINE L1 5945 6229 -62 2940 158 53 10 chrY 11458910 11459415 -13253664 - MER1A DNA MER1_type 0 527 1 2340 66 0 30 chrY 11459856 11460157 -13252922 - AluY SINE Alu -14 297 6 485 162 50 0 chrY 11460342 11460441 -13252638 + L1PA16 LINE L1 6063 6166 0 1306 153 35 85 chrY 11460930 11461212 -13251867 + AluJb SINE Alu 1 268 -44 954 189 57 53 chrY 11461949 11462214 -13250865 + MLT1C LTR MaLR 5 270 -197 301 398 0 9 chrY 11462540 11462653 -13250426 - MIR SINE MIR -81 127 16 2567 7 0 0 chrY 11463221 11463499 -13249580 - AluY SINE Alu -4 307 30 21 0 0 0 chrY 11463507 11463528 -13249551 + AT_rich Low_complexity Low_complexity 1 21 0 560 279 34 5 chrY 11463699 11463907 -13249172 - MER46C DNA MER2_type -4 334 121 439 227 102 8 chrY 11464470 11464598 -13248481 - MER58A DNA MER1_type 0 140 1 235 207 0 35 chrY 11465648 11465706 -13247373 - MER20 DNA MER1_type -5 214 159 672 263 40 0 chrY 11465713 11465888 -13247191 - MER20 DNA MER1_type -33 186 5 1669 171 0 0 chrY 11466122 11466368 -13246711 + AluSx SINE Alu 1 246 -66 614 245 131 35 chrY 11466968 11467263 -13245816 - MER58B DNA MER1_type 0 341 11 353 288 82 49 chrY 11467310 11467553 -13245526 - L2 LINE L2 -75 3238 2988 2934 137 36 0 chrY 11467595 11468064 -13245015 - MER1A DNA MER1_type 0 529 44 1418 195 66 0 chrY 11468106 11468378 -13244701 + AluJo SINE Alu 1 290 -22 1891 142 0 24 chrY 11468556 11468852 -13244227 + AluSg SINE Alu 1 289 -21 334 320 176 56 chrY 11469349 11469724 -13243355 - L1M4b LINE L1 -6180 679 260 193 232 19 13 chrY 11470193 11470265 -13242814 + MIR SINE MIR 70 143 -65 1825 167 3 19 chrY 11470275 11470592 -13242487 + AluSx SINE Alu 1 312 0 533 243 62 0 chrY 11470779 11470923 -13242156 + MER20 DNA MER1_type 15 167 -52 216 0 0 0 chrY 11471436 11471460 -13241619 + (T)n Simple_repeat Simple_repeat 1 24 0 675 235 174 47 chrY 11472296 11472594 -13240485 - MER4D LTR ERV1 0 779 444 299 238 6 0 chrY 11472595 11472666 -13240413 - MER4E LTR ERV1 -613 166 99 200 57 0 29 chrY 11472666 11472701 -13240378 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 299 238 6 0 chrY 11472701 11472741 -13240338 - MER4E LTR ERV1 -680 99 61 396 272 4 0 chrY 11472782 11472901 -13240178 + MER4E LTR ERV1 1 386 -397 653 228 52 26 chrY 11472911 11473104 -13239975 - LTR8 LTR ERV1 -485 206 9 1515 222 48 3 chrY 11473140 11473473 -13239606 - MER7A DNA MER2_type 0 346 1 742 166 25 18 chrY 11474354 11474517 -13238562 - MER34C LTR ERV1 -2 583 420 302 96 0 19 chrY 11474531 11474583 -13238496 + (TCCC)n Simple_repeat Simple_repeat 2 52 0 945 190 61 122 chrY 11475316 11475611 -13237468 - AluJo SINE Alu -25 287 11 343 322 87 24 chrY 11475611 11475819 -13237260 - HAL1 LINE L1 -920 1587 1367 345 100 0 0 chrY 11475901 11475951 -13237128 + (TC)n Simple_repeat Simple_repeat 1 50 0 452 272 23 15 chrY 11475952 11476213 -13236866 - HAL1 LINE L1 -1233 1274 1012 219 69 0 0 chrY 11476236 11476265 -13236814 + (T)n Simple_repeat Simple_repeat 1 29 0 1648 193 0 31 chrY 11476708 11477030 -13236049 + AluJb SINE Alu 1 312 0 2021 106 0 7 chrY 11478070 11478345 -13234734 - AluY SINE Alu -2 309 37 383 255 10 0 chrY 11478540 11478642 -13234437 - L1MD1 LINE L1 -8 6234 6132 275 130 19 0 chrY 11478733 11478787 -13234292 + CT-rich Low_complexity Low_complexity 3 57 0 918 244 20 14 chrY 11478808 11479269 -13233810 - MLT1D LTR MaLR -5 500 1 22 35 0 0 chrY 11479445 11479474 -13233605 + AT_rich Low_complexity Low_complexity 1 29 0 204 200 0 0 chrY 11479480 11479545 -13233534 + (TA)n Simple_repeat Simple_repeat 2 66 0 65 74 0 0 chrY 11479556 11479691 -13233388 + AT_rich Low_complexity Low_complexity 1 135 0 235 225 50 12 chrY 11479696 11479724 -13233355 + (TA)n Simple_repeat Simple_repeat 1 26 -140 3864 106 14 10 chrY 11479724 11480308 -13232771 - L1PA8A LINE L1 0 6131 5546 235 225 50 12 chrY 11480308 11480439 -13232640 + (TA)n Simple_repeat Simple_repeat 26 166 0 23 33 0 0 chrY 11480446 11480476 -13232603 + AT_rich Low_complexity Low_complexity 1 30 0 1030 130 38 124 chrY 11480576 11480891 -13232188 - L1MA8 LINE L1 -3 6288 6001 614 249 110 12 chrY 11480921 11481166 -13231913 - MLT1E3 LTR MaLR 0 624 356 1655 185 7 10 chrY 11481932 11482235 -13230844 + AluSx SINE Alu 1 302 -10 486 285 64 71 chrY 11482654 11483219 -13229860 - MER34B LTR ERV1 0 565 5 1329 216 30 14 chrY 11483373 11483669 -13229410 + AluJo SINE Alu 1 301 -11 2071 142 10 0 chrY 11484022 11484324 -13228755 - AluSq SINE Alu -6 307 3 3577 109 0 2 chrY 11484424 11484939 -13228140 - L1PB1 LINE L1 -8 6143 5630 207 0 0 0 chrY 11486025 11486048 -13227031 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 1252 229 177 25 chrY 11486050 11486534 -13226545 - MER92B LTR ERV1 -19 617 60 2060 175 22 26 chrY 11486534 11486986 -13226093 - MER31A LTR ERV1 0 485 36 42 36 0 0 chrY 11487445 11487501 -13225578 + AT_rich Low_complexity Low_complexity 1 56 0 540 245 98 0 chrY 11488166 11488350 -13224729 - MER31A LTR ERV1 -283 202 1 504 264 7 14 chrY 11488525 11488665 -13224414 + LTR69 LTR ERVL 13 151 -437 33 0 0 0 chrY 11488729 11488762 -13224317 + AT_rich Low_complexity Low_complexity 1 33 0 3953 195 19 11 chrY 11489007 11490054 -13223025 - L1MB1 LINE L1 -1 6561 5507 404 294 84 38 chrY 11490100 11490408 -13222671 - L1MB1 LINE L1 -5072 1457 1141 1425 206 21 18 chrY 11491199 11491480 -13221599 - AluJo SINE Alu -30 282 1 2175 219 42 57 chrY 11491523 11491797 -13221282 + L1MB5 LINE L1 5517 5794 -380 1734 167 71 8 chrY 11491797 11492150 -13220929 - THE1C LTR MaLR 0 375 1 2175 219 42 57 chrY 11492150 11492543 -13220536 + L1MB5 LINE L1 5794 6174 0 2347 174 11 24 chrY 11492628 11493082 -13219997 + MER83 LTR ERV1 1 448 0 4160 144 16 12 chrY 11494084 11494684 -13218395 - L1MA4A LINE L1 -8 6295 5690 1770 160 27 37 chrY 11494684 11495060 -13218019 + THE1C LTR MaLR 1 372 -3 4160 144 16 12 chrY 11495060 11495211 -13217868 - L1MA4A LINE L1 -613 5690 5541 431 130 15 179 chrY 11495558 11495720 -13217359 - MER83B-int LTR ERV1 -581 4299 3149 19662 121 12 11 chrY 11495727 11499883 -13213196 + L1PA7 LINE L1 1975 6138 -16 1705 129 29 23 chrY 11499920 11500306 -13212773 - MER83B-int LTR ERV1 -3479 3119 2732 1026 211 58 4 chrY 11500312 11500554 -13212525 + LTR8 LTR ERV1 3 257 -434 4121 94 53 40 chrY 11500554 11501045 -13212034 - MER4-int LTR ERV1 -4103 2495 1987 3611 67 9 2 chrY 11501045 11501490 -13211589 - LTR7 LTR ERV1 -2 448 1 4121 94 53 40 chrY 11501490 11501805 -13211274 - MER4-int LTR ERV1 -4611 1987 1678 1324 134 17 9 chrY 11501851 11502082 -13210997 - MER4-int LTR ERV1 -5372 1226 994 341 120 0 0 chrY 11502081 11502131 -13210948 - MER4-int LTR ERV1 -5712 886 837 * 1337 178 4 54 chrY 11502584 11502842 -13210237 - MER4A LTR ERV1 -48 616 372 1029 127 130 11 chrY 11503039 11503283 -13209796 + LTR7 LTR ERV1 1 327 -123 2727 79 121 15 chrY 11503284 11503689 -13209390 + LTR7 LTR ERV1 1 448 -2 20305 105 4 28 chrY 11503691 11506749 -13206330 + HERVH LTR ERV1 1 2985 -4728 802 168 20 7 chrY 11506745 11506894 -13206185 + HERVH LTR ERV1 3140 3290 -4423 * 3474 106 6 6 chrY 11506884 11507385 -13205694 + HERVH LTR ERV1 3492 3992 -3721 4499 142 0 0 chrY 11507388 11508050 -13205029 + HERVH LTR ERV1 4488 5149 -2564 1276 163 23 0 chrY 11508051 11508266 -13204813 + HERVH LTR ERV1 5600 5819 -1894 * 2349 111 48 13 chrY 11508264 11508643 -13204436 + HERVH LTR ERV1 7322 7713 0 2548 110 122 5 chrY 11508643 11509044 -13204035 + LTR7 LTR ERV1 1 448 -2 837 119 0 8 chrY 11509048 11509174 -13203905 + LTR7 LTR ERV1 326 450 0 1266 224 16 20 chrY 11509654 11509958 -13203121 - L1MB1 LINE L1 -1 6167 5865 1073 181 0 5 chrY 11509958 11510146 -13202933 - AluSg/x SINE Alu -10 302 116 5827 102 32 3 chrY 11510146 11510904 -13202175 - LTR17 LTR ERV1 0 780 1 649 214 8 0 chrY 11510905 11511022 -13202057 - FLAM_C SINE Alu -15 118 1 293 241 25 0 chrY 11511022 11511101 -13201978 - L1MB1 LINE L1 -293 5875 5795 807 129 0 0 chrY 11511137 11511253 -13201826 + MLT2B2 LTR ERVL 1 116 -399 1420 181 24 31 chrY 11511256 11511544 -13201535 - L1PB4 LINE L1 -1 6155 5870 237 33 33 0 chrY 11511593 11511623 -13201456 + L1P5 LINE L1 5829 5859 -297 * 446 139 0 109 chrY 11511613 11511714 -13201365 - L1PB4 LINE L1 -284 5872 5783 232 256 122 12 chrY 11511736 11511818 -13201261 - L1MC4 LINE L1 -1338 6704 6614 * 282 160 20 0 chrY 11511809 11511872 -13201207 - L1P3 LINE L1 -363 5791 5728 240 380 11 11 chrY 11511936 11512028 -13201051 - MIR SINE MIR -57 151 60 1264 230 10 37 chrY 11512032 11512332 -13200747 + AluJo SINE Alu 1 292 -20 25 0 0 0 chrY 11512335 11512360 -13200719 + AT_rich Low_complexity Low_complexity 1 25 0 2054 113 13 36 chrY 11512657 11512966 -13200113 + AluY SINE Alu 3 304 -7 21 57 0 0 chrY 11512975 11513010 -13200069 + AT_rich Low_complexity Low_complexity 1 35 0 8194 49 4 0 chrY 11513552 11515289 -13197790 - L1PA4 LINE L1 0 6155 4415 5314 62 12 0 chrY 11515289 11515969 -13197110 + L1PA4 LINE L1 3709 4396 -1750 1730 180 3 20 chrY 11516114 11516419 -13196660 - AluSx SINE Alu -3 309 10 387 0 0 0 chrY 11516729 11516772 -13196307 + (CA)n Simple_repeat Simple_repeat 2 44 0 1595 185 0 56 chrY 11516796 11517099 -13195980 - AluSx SINE Alu -26 286 1 35154 110 12 10 chrY 11517224 11523360 -13189719 - L1PA6 LINE L1 0 6154 11 1894 138 0 35 chrY 11523385 11523729 -13189350 - AluY SINE Alu 0 343 11 204 351 14 0 chrY 11523775 11523849 -13189230 + L2 LINE L2 2458 2532 -782 2025 125 0 0 chrY 11524580 11524907 -13188172 - AluY SINE Alu 0 327 1 1632 249 122 21 chrY 11525097 11525630 -13187449 - MLT1E LTR MaLR -6 587 1 25 65 0 0 chrY 11525679 11525725 -13187354 + AT_rich Low_complexity Low_complexity 1 46 0 799 192 4 113 chrY 11525795 11526024 -13187055 + AluSg/x SINE Alu 104 307 -5 301 241 134 27 chrY 11526048 11526160 -13186919 - MIR SINE MIR -74 188 65 1012 149 0 12 chrY 11526488 11526649 -13186430 - AluJo SINE Alu -34 278 120 791 261 51 10 chrY 11526655 11526850 -13186229 - AluJo SINE Alu -108 204 2 1774 170 0 7 chrY 11527277 11527560 -13185519 + AluSx SINE Alu 1 281 -31 207 0 0 0 chrY 11527563 11527586 -13185493 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 2160 117 7 3 chrY 11527627 11527926 -13185153 - AluSc SINE Alu -9 300 1 4910 119 31 4 chrY 11528355 11529058 -13184021 - LTR30 LTR ERV1 0 722 1 939 171 25 113 chrY 11529087 11529326 -13183753 + MER20 DNA MER1_type 1 218 -1 206 219 68 27 chrY 11529405 11529478 -13183601 + MIR SINE MIR 186 261 -1 913 188 11 17 chrY 11531878 11532054 -13181025 + MER20 DNA MER1_type 45 219 0 1762 166 18 0 chrY 11532795 11533098 -13179981 - AluSg SINE Alu 0 308 1 939 160 63 6 chrY 11533190 11533365 -13179714 - L1MB3 LINE L1 -2 6181 5997 21 0 0 0 chrY 11533377 11533398 -13179681 + AT_rich Low_complexity Low_complexity 1 21 0 358 253 68 41 chrY 11534151 11534297 -13178782 + MIR3 SINE MIR 42 191 -17 22 0 0 0 chrY 11534390 11534412 -13178667 + AT_rich Low_complexity Low_complexity 1 22 0 1322 226 7 14 chrY 11534413 11534692 -13178387 - AluJo SINE Alu -35 277 1 268 347 13 0 chrY 11534693 11534768 -13178311 + MIR3 SINE MIR 108 183 -25 209 277 0 0 chrY 11535135 11535182 -13177897 - L2 LINE L2 -963 2351 2305 351 180 67 22 chrY 11536047 11536136 -13176943 + L1PB4 LINE L1 6063 6155 -1 778 200 0 0 chrY 11536156 11536271 -13176808 + FLAM_C SINE Alu 2 116 -17 1276 215 13 60 chrY 11536296 11536612 -13176467 + AluJo SINE Alu 2 302 0 236 293 0 17 chrY 11536641 11536699 -13176380 - MIR3 SINE MIR -53 155 99 1809 181 0 13 chrY 11536885 11537200 -13175879 - AluSx SINE Alu -1 311 1 1121 172 0 0 chrY 11537853 11538022 -13175057 + AluJo SINE Alu 37 205 -107 1611 195 3 10 chrY 11540236 11540533 -13172546 + AluSx SINE Alu 1 295 -17 421 32 32 0 chrY 11541101 11541164 -13171915 + (TG)n Simple_repeat Simple_repeat 2 66 0 763 148 6 28 chrY 11541196 11541378 -13171701 + (TAGA)n Simple_repeat Simple_repeat 3 180 0 439 163 12 25 chrY 11541422 11541582 -13171497 + (TAGA)n Simple_repeat Simple_repeat 1 158 0 303 152 38 29 chrY 11541627 11541732 -13171347 + (TAGA)n Simple_repeat Simple_repeat 3 108 0 258 81 0 0 chrY 11542198 11542235 -13170844 + (A)n Simple_repeat Simple_repeat 1 37 0 255 31 0 0 chrY 11542317 11542349 -13170730 + (TTTTG)n Simple_repeat Simple_repeat 4 35 0 2695 27 0 0 chrY 11543761 11544062 -13169017 - AluYa5 SINE Alu -10 301 1 429 243 170 34 chrY 11545031 11545237 -13167842 - MLT1J2 LTR MaLR -44 406 173 1712 144 3 110 chrY 11545832 11546187 -13166892 + MER7A DNA MER2_type 2 316 -30 223 245 0 20 chrY 11546318 11546420 -13166659 + (TATATG)n Simple_repeat Simple_repeat 5 104 0 215 333 60 33 chrY 11547171 11547354 -13165725 - MER5A DNA MER1_type -1 188 1 325 254 157 49 chrY 11547462 11547587 -13165492 + MER112 DNA MER1_type 35 188 -72 289 42 21 21 chrY 11547587 11547635 -13165444 + (TTTG)n Simple_repeat Simple_repeat 2 49 0 325 254 157 49 chrY 11547635 11547694 -13165385 + MER112 DNA MER1_type 188 239 -21 282 95 0 0 chrY 11548791 11548833 -13164246 + (TA)n Simple_repeat Simple_repeat 2 43 0 189 0 0 0 chrY 11550285 11550306 -13162773 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 754 236 0 14 chrY 11550984 11551118 -13161961 + AluJo SINE Alu 4 137 -175 1387 215 10 33 chrY 11551118 11551425 -13161654 + AluJo SINE Alu 1 300 -12 754 236 0 14 chrY 11551425 11551438 -13161641 + AluJo SINE Alu 137 149 -163 190 388 53 44 chrY 11551715 11551942 -13161137 + L2 LINE L2 3026 3254 -18 1951 170 0 6 chrY 11554341 11554652 -13158427 + AluSx SINE Alu 1 309 -3 2349 167 56 4 chrY 11554786 11555116 -13157963 + MER39B LTR ERV1 91 453 -200 2244 125 0 0 chrY 11555116 11555420 -13157659 - AluSc SINE Alu -5 304 1 2349 167 56 4 chrY 11555420 11555556 -13157523 + MER39B LTR ERV1 453 581 -72 222 345 99 42 chrY 11555603 11555745 -13157334 - L2 LINE L2 -2 3270 3121 2118 166 23 27 chrY 11556706 11557183 -13155896 + L1MA7 LINE L1 5788 6262 -29 212 174 0 22 chrY 11557236 11557282 -13155797 + (TATATG)n Simple_repeat Simple_repeat 6 50 0 246 128 0 0 chrY 11557699 11557738 -13155341 + (T)n Simple_repeat Simple_repeat 1 39 0 1159 159 29 19 chrY 11558061 11558269 -13154810 + AluJo SINE Alu 84 293 -19 506 147 52 5 chrY 11558457 11558566 -13154513 - LTR29 LTR ERV1 -527 95 1 230 348 44 22 chrY 11558605 11558740 -13154339 - MIR SINE MIR -98 164 27 897 211 29 45 chrY 11558883 11559125 -13153954 - MLT1D LTR MaLR -263 242 5 3513 202 47 22 chrY 11560503 11561267 -13151812 - LTR39 LTR ERV1 0 783 1 9917 53 1 8 chrY 11561528 11562863 -13150216 - L1PA4 LINE L1 -913 5233 3909 7018 47 12 3 chrY 11562863 11563784 -13149295 + L1PA4 LINE L1 5226 6154 -1 311 169 31 0 chrY 11564430 11564495 -13148584 - AluS SINE Alu -4 296 230 234 79 0 26 chrY 11564565 11564603 -13148476 + L1PA14 LINE L1 5750 5786 -375 2056 120 3 19 chrY 11564607 11564915 -13148164 + AluY SINE Alu 9 311 0 2412 114 13 10 chrY 11564920 11565306 -13147773 + L1PA14 LINE L1 5769 6155 -6 371 334 64 62 chrY 11566389 11567032 -13146047 + L2 LINE L2 2067 2710 -604 770 257 91 21 chrY 11567044 11567285 -13145794 - MLT1C LTR MaLR -6 461 204 1553 209 0 10 chrY 11567308 11567604 -13145475 + AluJo SINE Alu 3 295 -17 588 250 147 0 chrY 11567616 11567772 -13145307 + FRAM SINE Alu 1 175 -1 347 345 209 0 chrY 11567886 11568225 -13144854 + L2 LINE L2 2900 3309 -4 2048 178 8 3 chrY 11568230 11568589 -13144490 + THE1B LTR MaLR 4 364 0 2577 143 30 2 chrY 11570937 11571378 -13141701 + L1PA15 LINE L1 5709 6161 -4 1349 177 28 0 chrY 11572137 11572386 -13140693 - L1PA16 LINE L1 -23 6143 5888 525 141 240 0 chrY 11572386 11572507 -13140572 - MER4D LTR ERV1 -520 352 203 826 241 0 6 chrY 11572611 11572777 -13140302 - AluJb SINE Alu -22 290 126 654 124 18 18 chrY 11572795 11572908 -13140171 - L1PA7 LINE L1 0 6154 6042 366 95 16 0 chrY 11572908 11572971 -13140108 + L1P LINE L1 5066 5129 -1017 431 203 0 0 chrY 11572997 11573071 -13140008 - AluJ/FLAM SINE Alu -236 76 3 190 322 0 0 chrY 11573327 11573386 -13139693 - MIR3 SINE MIR -2 206 148 21 89 0 0 chrY 11574754 11574810 -13138269 + AT_rich Low_complexity Low_complexity 1 56 0 234 311 0 39 chrY 11575342 11575445 -13137634 - L2 LINE L2 -276 2996 2898 37700 55 33 2 chrY 11575980 11581943 -13131136 - L1PA3 LINE L1 -3 6152 1 551 162 0 0 chrY 11582254 11582399 -13130680 + FLAM_C SINE Alu 45 189 0 888 201 0 0 chrY 11582401 11582555 -13130524 + AluJo/FRAM SINE Alu 137 290 -22 21 36 0 0 chrY 11583659 11583687 -13129392 + AT_rich Low_complexity Low_complexity 1 28 0 491 309 34 6 chrY 11583872 11584050 -13129029 + MIR SINE MIR 20 202 -60 2592 42 0 6 chrY 11586184 11586495 -13126584 + AluY SINE Alu 1 309 -2 302 315 39 8 chrY 11586661 11586791 -13126288 - L2 LINE L2 0 3313 3180 213 326 63 21 chrY 11586792 11586887 -13126192 - L2 LINE L2 -40 3232 3134 23 33 0 0 chrY 11587620 11587650 -13125429 + AT_rich Low_complexity Low_complexity 1 30 0 318 220 100 0 chrY 11588213 11588313 -13124766 + L1MA4 LINE L1 6186 6295 -5 223 322 0 35 chrY 11589962 11590049 -13123030 - MIR SINE MIR 0 262 179 279 229 24 12 chrY 11590364 11590447 -13122632 - MLT1J LTR MaLR -351 160 77 909 188 0 0 chrY 11590571 11590715 -13122364 + AluSg/x SINE Alu 147 290 -20 370 114 101 38 chrY 11591282 11591361 -13121718 - ORSL DNA AcHobo -28 247 164 39 38 0 0 chrY 11591417 11591470 -13121609 + AT_rich Low_complexity Low_complexity 1 53 0 639 133 9 0 chrY 11591957 11592062 -13121017 + MER31A LTR ERV1 3 108 -377 1222 201 53 3 chrY 11592188 11592491 -13120588 + MER31A LTR ERV1 168 485 0 1976 163 7 0 chrY 11592938 11593244 -13119835 - AluSx SINE Alu -4 308 1 2775 182 41 18 chrY 11593758 11594270 -13118809 + MER1A DNA MER1_type 3 526 -1 2282 105 31 6 chrY 11594352 11594704 -13118375 - THE1C LTR MaLR 0 375 15 7367 174 95 16 chrY 11594707 11596303 -13116776 - MLT1J-int LTR MaLR 0 1580 2 2174 147 25 5 chrY 11596305 11596673 -13116406 - THE1C LTR MaLR 0 375 1 380 197 66 109 chrY 11596673 11596856 -13116223 + MLT1J2 LTR MaLR 276 450 0 1740 128 0 116 chrY 11597322 11597649 -13115430 - AluSq SINE Alu -24 289 1 350 301 73 0 chrY 11598430 11598553 -13114526 - MIR SINE MIR -36 226 95 416 357 39 0 chrY 11598611 11598740 -13114339 - MER91C DNA MER1_type 0 140 7 229 230 27 54 chrY 11599009 11599083 -13113996 + MLT1I LTR MaLR 10 81 -328 432 304 14 0 chrY 11599159 11599297 -13113782 + MLT1I LTR MaLR 230 369 -40 1989 72 0 0 chrY 11599965 11600227 -13112852 - L1PA4 LINE L1 -2 6153 5892 3131 164 36 2 chrY 11601325 11601873 -13111206 + L1PA8 LINE L1 6 572 -5889 34364 66 5 4 chrY 11601874 11608004 -13105075 + L1PA4 LINE L1 1 6144 -11 12095 169 94 30 chrY 11608021 11611538 -13101541 + L1PA8 LINE L1 566 4395 -2066 6799 72 1 3 chrY 11611540 11612690 -13100389 + L1PA5 LINE L1 5022 6184 0 7524 140 2 4 chrY 11612715 11614800 -13098279 + L1PA8 LINE L1 4383 6484 -3 27 0 0 0 chrY 11615698 11615725 -13097354 + AT_rich Low_complexity Low_complexity 1 27 0 585 290 22 31 chrY 11615819 11616043 -13097036 + L1M4 LINE L1 24 245 -6297 1280 214 50 8 chrY 11616173 11616532 -13096547 + L1MB7 LINE L1 5790 6163 -21 771 177 14 7 chrY 11616588 11616729 -13096350 + FLAM_C SINE Alu 1 142 -1 666 209 177 0 chrY 11616751 11616909 -13096170 + AluSq SINE Alu 2 187 -126 813 234 0 71 chrY 11616940 11617166 -13095913 + AluJo SINE Alu 85 294 -18 265 299 58 11 chrY 11617530 11617617 -13095462 + L2 LINE L2 3151 3241 -31 3467 155 29 18 chrY 11617754 11618413 -13094666 + L1MC1 LINE L1 5649 6314 -19 2139 153 3 40 chrY 11618770 11619148 -13093931 + THE1B LTR MaLR 1 364 0 10432 138 5 0 chrY 11619149 11620720 -13092359 + THE1B-int LTR MaLR 2 1580 0 1804 193 28 25 chrY 11620720 11621083 -13091996 + THE1B LTR MaLR 1 364 0 677 279 35 4 chrY 11623038 11623267 -13089812 - MLT1E1 LTR MaLR 0 654 419 1250 197 26 45 chrY 11623296 11623560 -13089519 - AluJb SINE Alu -18 294 36 404 246 203 0 chrY 11623582 11623720 -13089359 - MLT1E1 LTR MaLR -337 289 124 255 165 0 18 chrY 11623830 11623900 -13089179 - MLT1E1 LTR MaLR -463 191 52 1067 209 9 5 chrY 11624095 11624310 -13088769 + AluJo SINE Alu 84 299 -13 363 263 63 0 chrY 11624323 11624418 -13088661 - MLT1J LTR MaLR -341 170 70 231 296 0 0 chrY 11624765 11624836 -13088243 + (TG)n Simple_repeat Simple_repeat 2 72 0 1401 207 25 25 chrY 11625014 11625294 -13087785 + AluJo SINE Alu 11 290 -22 340 314 71 0 chrY 11626350 11626490 -13086589 - MIR SINE MIR -5 257 108 655 248 27 13 chrY 11627156 11627305 -13085774 + FRAM SINE Alu 2 152 -14 5460 216 25 74 chrY 11627518 11628982 -13084097 - MER52A LTR ERV1 0 1755 384 1626 208 21 44 chrY 11628986 11629393 -13083686 + THE1B LTR MaLR 1 423 -5 743 245 0 69 chrY 11629390 11629623 -13083456 - MER52A LTR ERV1 -1538 217 1 * 1585 215 16 3 chrY 11629853 11630160 -13082919 - AluJo SINE Alu -1 311 1 2141 179 39 52 chrY 11630649 11630862 -13082217 - L1PA16 LINE L1 -21 6145 5931 1547 213 21 0 chrY 11630862 11631144 -13081935 - AluSx SINE Alu -24 288 1 2141 179 39 52 chrY 11631144 11631445 -13081634 - L1PA16 LINE L1 -235 5931 5638 2035 248 37 35 chrY 11632319 11632944 -13080135 - MLT1E2 LTR MaLR 0 626 1 812 288 57 42 chrY 11633395 11633912 -13079167 - MLT1E LTR MaLR 0 593 21 3658 231 107 21 chrY 11634274 11635506 -13077573 - Charlie1a DNA MER1_type -1308 1453 99 225 0 0 0 chrY 11635506 11635531 -13077548 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 3658 231 107 21 chrY 11635531 11635611 -13077468 - Charlie1a DNA MER1_type -2662 99 27 7482 35 0 0 chrY 11635681 11636797 -13076282 - L1PA3 LINE L1 0 6155 5040 1065 16 0 0 chrY 11636798 11636926 -13076153 + L1PA3 LINE L1 4903 5030 -1116 225 277 186 23 chrY 11637886 11638074 -13075005 + MIR SINE MIR 25 247 -15 1638 227 0 6 chrY 11638138 11638451 -13074628 - AluJb SINE Alu -1 311 1 463 225 78 23 chrY 11638667 11638796 -13074283 - Charlie1a DNA MER1_type -1244 211 76 1913 142 7 23 chrY 11639438 11639740 -13073339 - AluSq SINE Alu -16 297 1 1517 93 0 9 chrY 11642126 11642341 -13070738 - L1PA5 LINE L1 -5 6149 5937 1585 199 0 21 chrY 11642866 11643157 -13069922 + AluJb SINE Alu 1 285 -27 279 0 0 0 chrY 11643159 11643190 -13069889 + (TTAA)n Simple_repeat Simple_repeat 4 34 0 362 298 34 47 chrY 11643760 11643913 -13069166 + MIR3 SINE MIR 7 164 -66 286 301 49 16 chrY 11694335 11694458 -13018621 - MIR SINE MIR -17 245 119 270 0 0 0 chrY 11694487 11694517 -13018562 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 2194 90 0 4 chrY 11694520 11694799 -13018280 - AluSx SINE Alu -34 278 1 1456 143 0 4 chrY 11694969 11695206 -13017873 + L1MC/D LINE L1 5447 5682 -651 453 299 143 13 chrY 11695348 11695572 -13017507 + MIR SINE MIR 7 259 -3 228 316 0 13 chrY 11696152 11696228 -13016851 + GA-rich Low_complexity Low_complexity 5 79 0 316 196 0 0 chrY 11698307 11698358 -13014721 + L2 LINE L2 3252 3302 -11 198 71 0 0 chrY 11698359 11698387 -13014692 + (TGAA)n Simple_repeat Simple_repeat 4 31 0 768 217 0 72 chrY 11698784 11698991 -13014088 + MLT1D LTR MaLR 1 192 -313 507 190 25 16 chrY 11698992 11699113 -13013966 + MLT1D LTR MaLR 384 505 0 1954 99 51 20 chrY 11700185 11700479 -13012600 - AluY SINE Alu -8 303 1 2300 52 0 0 chrY 11700696 11701010 -13012069 + AluY SINE Alu 13 326 0 1046 232 121 11 chrY 11701117 11701389 -13011690 - AluJb SINE Alu 0 302 1 269 116 0 0 chrY 11702190 11702233 -13010846 + L1PA7 LINE L1 6102 6144 -10 347 382 8 29 chrY 11702633 11702871 -13010208 + MIR SINE MIR 29 261 -1 235 281 16 108 chrY 11703006 11703146 -13009933 + LTR33 LTR ERVL 20 141 -380 2834 183 47 10 chrY 11703146 11703724 -13009355 - LTR26 LTR ERV1 0 603 5 235 281 16 108 chrY 11703724 11703768 -13009311 + LTR33 LTR ERVL 141 187 -334 1160 172 13 0 chrY 11704116 11704348 -13008731 + L1MA7 LINE L1 6051 6285 -6 1584 183 66 0 chrY 11704496 11704770 -13008309 - AluSx SINE Alu -12 300 9 24 32 0 0 chrY 11704820 11704851 -13008228 + AT_rich Low_complexity Low_complexity 1 31 0 1128 231 45 11 chrY 11704854 11705122 -13007957 - AluJo SINE Alu -30 282 6 20980 137 17 2 chrY 11705352 11709734 -13003345 - L1PA7 LINE L1 -7 6147 1703 1493 104 284 190 chrY 11709734 11710265 -13002814 + LTR12 LTR ERV1 1 581 -133 1644 141 4 0 chrY 11710265 11710534 -13002545 - L1PA7 LINE L1 -4440 1706 1437 352 300 18 9 chrY 11711961 11712071 -13001008 - MLT1E LTR MaLR -142 451 341 1574 188 35 14 chrY 11712153 11712529 -13000550 - AluJo SINE Alu 0 382 1 24 32 0 0 chrY 11712980 11713011 -13000068 + AT_rich Low_complexity Low_complexity 1 31 0 225 287 32 11 chrY 11713259 11713353 -12999726 - L1M4 LINE L1 -2310 3836 3741 6156 84 7 21 chrY 11713373 11714279 -12998800 - L1PA7 LINE L1 0 6154 5262 * 8094 145 1 13 chrY 11714277 11714941 -12998138 - L1P LINE L1 -2425 3721 3051 7231 43 7 0 chrY 11714941 11716593 -12996486 - L1PA3 LINE L1 0 6155 4497 8094 145 1 13 chrY 11716593 11717337 -12995742 - L1P LINE L1 -3095 3051 2329 9964 139 6 44 chrY 11717338 11719826 -12993253 + L1PA7 LINE L1 3711 6152 -2 2012 177 14 27 chrY 11720225 11720593 -12992486 + THE1B LTR MaLR 1 363 -1 1361 181 67 11 chrY 11720966 11721081 -12991998 + AluJo SINE Alu 5 112 -200 261 0 0 0 chrY 11721081 11721110 -12991969 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1361 181 67 11 chrY 11721110 11721264 -12991815 + AluJo SINE Alu 112 289 -23 216 192 269 0 chrY 11721680 11721758 -12991321 - MER5A DNA MER1_type -87 102 4 946 243 146 73 chrY 11722290 11722776 -12990303 + MLT1E2 LTR MaLR 1 624 -2 1831 162 7 0 chrY 11722780 11723076 -12990003 + AluSq SINE Alu 1 298 -15 1601 199 0 7 chrY 11723794 11724096 -12988983 - AluJo SINE Alu -8 304 5 474 105 39 50 chrY 11724494 11724675 -12988404 + (TCTA)n Simple_repeat Simple_repeat 2 180 0 350 42 21 0 chrY 11724732 11724780 -12988299 + (TTCC)n Simple_repeat Simple_repeat 4 52 0 1199 40 29 6 chrY 11724780 11724813 -12988266 + (TTTC)n Simple_repeat Simple_repeat 1 210 0 1199 40 29 6 chrY 11724813 11724986 -12988093 + (TTTC)n Simple_repeat Simple_repeat 2 178 0 372 253 149 36 chrY 11725029 11725223 -12987856 + L2 LINE L2 3096 3311 -2 2026 175 8 3 chrY 11725338 11725693 -12987386 + MLT1A1 LTR MaLR 4 360 -5 7982 107 7 6 chrY 11726036 11727254 -12985825 - L1P LINE L1 -2542 3604 2386 11398 117 45 10 chrY 11727278 11729772 -12983307 + L1PA6 LINE L1 3617 6151 -3 325 264 58 16 chrY 11732120 11732241 -12980838 + MLT1I LTR MaLR 278 403 -6 336 143 0 0 chrY 11732836 11732892 -12980187 + (A)n Simple_repeat Simple_repeat 1 56 0 26 30 0 0 chrY 11733504 11733537 -12979542 + AT_rich Low_complexity Low_complexity 1 33 0 1582 211 7 0 chrY 11733808 11734106 -12978973 - AluJo SINE Alu -12 300 1 3072 68 2 113 chrY 11734766 11735270 -12977809 - LTR7 LTR ERV1 -2 448 1 282 29 0 0 chrY 11736193 11736228 -12976851 + (TG)n Simple_repeat Simple_repeat 1 35 0 1538 169 60 58 chrY 11736366 11736756 -12976323 + MLT1B LTR MaLR 1 365 0 990 189 57 0 chrY 11736762 11736974 -12976105 + MLT1B LTR MaLR 167 390 0 1935 244 70 21 chrY 11737151 11737733 -12975346 + MLT1E2 LTR MaLR 14 624 -2 438 224 17 35 chrY 11737801 11737917 -12975162 + MER5A DNA MER1_type 13 126 -63 4627 163 44 14 chrY 11738036 11738948 -12974131 + L1MA5A LINE L1 5353 6291 -6 1799 163 7 0 chrY 11739035 11739329 -12973750 - AluSx SINE Alu -6 306 11 986 259 84 19 chrY 11740660 11741089 -12971990 + L1ME LINE L1 5264 5720 -450 1903 168 3 0 chrY 11741671 11741969 -12971110 + AluSx SINE Alu 1 299 -13 24 0 0 0 chrY 11742623 11742647 -12970432 + AT_rich Low_complexity Low_complexity 1 24 0 4445 66 3 0 chrY 11742686 11743264 -12969815 - L1P LINE L1 -1839 4307 3728 6542 66 27 1 chrY 11743264 11744374 -12968705 + L1PA5 LINE L1 5022 6154 0 443 117 53 23 chrY 11745100 11745271 -12967808 + (TCTA)n Simple_repeat Simple_repeat 3 178 0 442 328 47 13 chrY 11745604 11745910 -12967169 - L1ME3A LINE L1 -306 5864 5539 571 158 0 0 chrY 11745978 11746073 -12967006 - FLAM_C SINE Alu -12 131 37 284 267 32 1 chrY 11746073 11746207 -12966872 - L1M1 LINE L1 -864 5441 5299 252 0 0 0 chrY 11746457 11746485 -12966594 + (GA)n Simple_repeat Simple_repeat 1 28 0 688 213 0 59 chrY 11746486 11746655 -12966424 - AluJo SINE Alu -33 279 121 315 0 0 0 chrY 11746733 11746768 -12966311 + (TA)n Simple_repeat Simple_repeat 1 35 0 1390 249 75 29 chrY 11747586 11748011 -12965068 + MLT2B2 LTR ERVL 10 461 -54 569 43 34 43 chrY 11748011 11748128 -12964951 + (TCTA)n Simple_repeat Simple_repeat 3 118 0 1390 249 75 29 chrY 11748128 11748184 -12964895 + MLT2B2 LTR ERVL 461 513 -2 23 0 0 0 chrY 11748630 11748653 -12964426 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chrY 11749045 11749066 -12964013 + AT_rich Low_complexity Low_complexity 1 21 0 914 219 18 55 chrY 11749604 11749823 -12963256 + MER58A DNA MER1_type 14 224 0 25 0 0 0 chrY 11750129 11750154 -12962925 + AT_rich Low_complexity Low_complexity 1 25 0 221 219 0 0 chrY 11750573 11750646 -12962433 + (TG)n Simple_repeat Simple_repeat 1 73 0 733 237 17 0 chrY 11751088 11751261 -12961818 + MER20 DNA MER1_type 43 218 -1 1599 180 10 17 chrY 11752374 11752669 -12960410 + AluSx SINE Alu 3 295 -17 212 279 23 0 chrY 11752683 11752769 -12960310 + A-rich Low_complexity Low_complexity 2 89 0 8906 149 60 18 chrY 11752862 11754584 -12958495 - L1P LINE L1 -2514 3632 1839 6709 61 0 0 chrY 11754584 11755512 -12957567 - L1PA4 LINE L1 -6 6149 5232 40240 73 4 5 chrY 11755542 11761702 -12951377 + L1PA4 LINE L1 2 6154 -1 2097 129 7 0 chrY 11761872 11762174 -12950905 - AluSx SINE Alu -8 304 1 1257 134 0 0 chrY 11762553 11762754 -12950325 - L1P4 LINE L1 -343 5818 5618 1879 163 7 0 chrY 11763030 11763315 -12949764 + AluSx SINE Alu 1 290 -22 294 29 0 0 chrY 11763315 11763350 -12949729 + (CA)n Simple_repeat Simple_repeat 2 36 0 542 238 131 81 chrY 11763455 11763858 -12949221 + LTR30 LTR ERV1 110 596 0 626 143 0 9 chrY 11764755 11764860 -12948219 + MER4E LTR ERV1 1 104 -662 40860 51 23 2 chrY 11764871 11770894 -12942185 - L1PA3 LINE L1 0 6155 3 3702 150 19 67 chrY 11770894 11771616 -12941463 + MER4E LTR ERV1 92 779 0 465 34 0 0 chrY 11771994 11772053 -12941026 + (CA)n Simple_repeat Simple_repeat 2 60 0 2432 106 34 0 chrY 11772205 11772562 -12940517 - MER4E LTR ERV1 0 766 398 740 299 4 4 chrY 11772558 11772789 -12940290 + MER89 LTR ERV1 184 414 -145 * 1430 249 100 42 chrY 11772771 11773410 -12939669 - MER50 LTR ERV1 -49 685 10 602 187 53 73 chrY 11773418 11773568 -12939511 + MER89 LTR ERV1 413 559 0 2660 27 0 0 chrY 11773761 11774060 -12939019 - AluYa5 SINE Alu -12 299 1 1056 254 14 35 chrY 11775318 11775602 -12937477 - L1PA16 LINE L1 -33 6133 5856 3435 256 60 52 chrY 11776102 11777515 -12935564 + Charlie1a DNA MER1_type 14 1437 -18 1610 93 0 0 chrY 11778140 11778365 -12934714 - L1PA4 LINE L1 0 6155 5931 7266 53 0 4 chrY 11779293 11780482 -12932597 - L1PA4 LINE L1 -504 5651 4468 3924 57 8 10 chrY 11780482 11780989 -12932090 + L1PA4 LINE L1 5639 6147 -8 383 183 0 0 chrY 11781396 11781467 -12931612 - MADE1 DNA Mariner 0 80 10 195 100 0 0 chrY 11781683 11781713 -12931366 + (CA)n Simple_repeat Simple_repeat 2 31 0 327 281 70 23 chrY 11781809 11781937 -12931142 + L1M4 LINE L1 3333 3466 -2680 510 264 52 23 chrY 11782059 11782233 -12930846 + MER5A DNA MER1_type 11 189 0 318 309 36 19 chrY 11782328 11782635 -12930444 + L1M4 LINE L1 3689 4000 -2146 21 36 0 0 chrY 11783008 11783036 -12930043 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chrY 11783114 11783143 -12929936 + AT_rich Low_complexity Low_complexity 1 29 0 962 141 0 0 chrY 11783972 11784135 -12928944 + AluY SINE Alu 143 305 -6 191 88 29 0 chrY 11784313 11784347 -12928732 + (CAAA)n Simple_repeat Simple_repeat 4 38 0 2157 126 22 34 chrY 11784541 11784899 -12928180 + HERV9 LTR ERV1 7679 8032 -367 38286 89 6 2 chrY 11784899 11791027 -12922052 - L1PA5 LINE L1 -2 6152 2 2139 180 3 3 chrY 11791029 11791402 -12921677 + HERV9 LTR ERV1 8027 8399 0 242 186 0 0 chrY 11791402 11791445 -12921634 + LTR30 LTR ERV1 1 43 -679 648 153 151 78 chrY 11791445 11791639 -12921440 + LTR12 LTR ERV1 44 1860 -480 318 248 29 19 chrY 11791724 11791829 -12921250 + LTR30 LTR ERV1 548 653 -69 593 130 0 0 chrY 11791829 11791921 -12921158 + LTR12 LTR ERV1 623 714 0 204 40 0 0 chrY 11792619 11792644 -12920435 + (T)n Simple_repeat Simple_repeat 1 25 0 206 234 0 0 chrY 11792990 11793037 -12920042 + (CATATA)n Simple_repeat Simple_repeat 1 47 0 201 39 0 0 chrY 11793206 11793232 -12919847 + (TG)n Simple_repeat Simple_repeat 1 26 0 1768 158 14 0 chrY 11793232 11793524 -12919555 - AluSx SINE Alu -16 296 1 993 251 48 19 chrY 11793671 11793982 -12919097 - MER7A DNA MER2_type -22 324 7 1507 167 25 0 chrY 11794053 11794332 -12918747 - AluSq SINE Alu 0 325 41 1193 227 4 29 chrY 11794617 11794934 -12918145 + AluJb SINE Alu 20 329 0 463 326 114 42 chrY 11795027 11795713 -12917366 - L1 LINE L1 -1334 4812 4078 330 318 7 47 chrY 11795708 11795788 -12917291 - L1 LINE L1 -2323 3823 3750 * 1894 168 0 13 chrY 11795788 11796104 -12916975 + AluSx SINE Alu 1 312 0 330 318 7 47 chrY 11796104 11796171 -12916908 - L1 LINE L1 -2396 3750 3682 305 315 61 17 chrY 11796174 11796469 -12916610 - Charlie2 DNA MER1_type -62 2800 2493 21 0 0 0 chrY 11796475 11796496 -12916583 + AT_rich Low_complexity Low_complexity 1 21 0 1000 220 99 76 chrY 11797463 11797885 -12915194 + L1MD3 LINE L1 7329 7934 -48 568 260 100 66 chrY 11797990 11798371 -12914708 + L1M4 LINE L1 2772 3165 -2981 359 363 71 0 chrY 11799364 11799532 -12913547 + L3b LINE CR1 1228 1407 -176 301 195 24 0 chrY 11800292 11800374 -12912705 + (CTTAA)n Simple_repeat Simple_repeat 1 84 0 293 68 23 0 chrY 11800754 11800798 -12912281 + (CA)n Simple_repeat Simple_repeat 2 46 0 955 159 21 51 chrY 11800909 11801150 -12911929 + L1MA8 LINE L1 5473 5693 -481 2959 163 48 10 chrY 11801256 11801844 -12911235 + L1MA8 LINE L1 5676 6285 -6 410 306 102 43 chrY 11802941 11803196 -12909883 - LTR16C LTR ERVL -28 463 194 738 123 18 0 chrY 11803309 11803423 -12909656 - FRAM SINE Alu -13 163 48 185 287 81 11 chrY 11805168 11805255 -12907824 - L2 LINE L2 -1370 1944 1852 23 86 0 0 chrY 11805344 11805402 -12907677 + AT_rich Low_complexity Low_complexity 1 58 0 647 234 25 18 chrY 11805859 11806033 -12907046 + MER58B DNA MER1_type 167 341 0 2186 110 0 28 chrY 11806786 11807103 -12905976 - AluY SINE Alu -3 308 1 1598 184 44 0 chrY 11807119 11807390 -12905689 - AluSx SINE Alu 0 312 30 563 291 80 23 chrY 11807397 11807748 -12905331 + L1ME3A LINE L1 5545 5915 -255 299 207 0 0 chrY 11807762 11807820 -12905259 - AluS SINE Alu -245 58 1 297 240 8 16 chrY 11808715 11808840 -12904239 + CT-rich Low_complexity Low_complexity 1 124 0 26 0 0 0 chrY 11808841 11808867 -12904212 + AT_rich Low_complexity Low_complexity 1 26 0 321 332 110 67 chrY 11809010 11809356 -12903723 + L3b LINE CR1 1190 1550 -33 1694 173 92 15 chrY 11809872 11810208 -12902871 - THE1B LTR MaLR -2 362 1 2686 198 110 7 chrY 11810263 11810974 -12902105 - L1MC3 LINE L1 -1 7784 7001 744 158 144 22 chrY 11812208 11812347 -12900732 - AluJb SINE Alu -23 289 134 1044 92 0 0 chrY 11813282 11813412 -12899667 - AluSq/x SINE Alu -182 130 1 6032 141 32 11 chrY 11813600 11814664 -12898415 + HERVH LTR ERV1 1150 2235 -6164 417 116 159 0 chrY 11814675 11814744 -12898335 + HERVH LTR ERV1 5740 5819 -1894 2145 135 10 15 chrY 11814744 11815136 -12897943 + HERVH LTR ERV1 7324 7713 0 2757 111 7 9 chrY 11815136 11815579 -12897500 + LTR7 LTR ERV1 1 442 -8 441 249 96 56 chrY 11815665 11815716 -12897363 + MER20 DNA MER1_type 13 60 -159 5539 166 16 14 chrY 11815716 11816683 -12896396 - LTR5 LTR ERVK 0 969 1 441 249 96 56 chrY 11816683 11816807 -12896272 + MER20 DNA MER1_type 60 199 -20 3762 134 14 16 chrY 11816807 11817443 -12895636 - MER41B LTR ERV1 0 635 1 441 249 96 56 chrY 11817443 11817463 -12895616 + MER20 DNA MER1_type 199 217 -2 181 305 17 0 chrY 11818441 11818500 -12894579 + MIR SINE MIR 64 123 -139 21 71 0 0 chrY 11818745 11818787 -12894292 + AT_rich Low_complexity Low_complexity 1 42 0 1594 219 91 16 chrY 11818816 11819258 -12893821 - MLT2B2 LTR ERVL -40 475 1 1760 185 14 0 chrY 11820389 11820686 -12892393 - AluSx SINE Alu -11 301 1 1560 209 3 0 chrY 11821264 11821581 -12891498 - AluSx SINE Alu 0 318 1 182 345 36 24 chrY 11821702 11821786 -12891293 + L2 LINE L2 2228 2312 -1002 28 29 0 0 chrY 11823359 11823394 -12889685 + AT_rich Low_complexity Low_complexity 1 35 0 517 192 0 89 chrY 11823629 11823775 -12889304 + FLAM_A SINE Alu 1 133 0 216 337 99 25 chrY 11823880 11824082 -12888997 - MIR SINE MIR -10 252 36 1658 176 18 4 chrY 11824562 11824841 -12888238 + AluSx SINE Alu 6 288 -24 1697 172 23 23 chrY 11824914 11825262 -12887817 - MLT1B LTR MaLR -42 348 1 189 0 0 0 chrY 11825845 11825866 -12887213 + (T)n Simple_repeat Simple_repeat 1 21 0 2558 121 14 75 chrY 11826565 11827069 -12886010 + L1PA10 LINE L1 5695 6167 -1 210 71 0 0 chrY 11828726 11828754 -12884325 + (TTA)n Simple_repeat Simple_repeat 3 30 0 36511 54 4 5 chrY 11828754 11834427 -12878652 - L1PA3 LINE L1 -18 6137 473 225 159 0 0 chrY 11834719 11834763 -12878316 + T-rich Low_complexity Low_complexity 1 44 0 563 208 0 0 chrY 11835320 11835421 -12877658 - AluJ/FLAM SINE Alu -211 101 1 451 287 17 22 chrY 11835432 11835613 -12877466 + CT-rich Low_complexity Low_complexity 1 180 0 1191 263 93 23 chrY 11836720 11837192 -12875887 + MLT1D LTR MaLR 1 505 0 356 169 14 0 chrY 11839795 11839866 -12873213 - MADE1 DNA Mariner 0 80 9 301 287 83 9 chrY 11840039 11840147 -12872932 + L2 LINE L2 3189 3304 -9 393 302 68 21 chrY 11840166 11840270 -12872809 + MER3 DNA MER1_type 9 107 -102 2141 152 16 16 chrY 11840270 11840645 -12872434 - THE1C LTR MaLR 0 375 1 393 302 68 21 chrY 11840645 11840732 -12872347 + MER3 DNA MER1_type 107 209 0 1151 241 0 19 chrY 11841101 11841371 -12871708 - AluJo SINE Alu -6 306 42 21 0 0 0 chrY 11841720 11841741 -12871338 + AT_rich Low_complexity Low_complexity 1 21 0 218 305 0 0 chrY 11841857 11841916 -12871163 + GA-rich Low_complexity Low_complexity 2 60 0 3407 80 2 5 chrY 11842273 11842722 -12870357 - LTR7 LTR ERV1 -2 448 1 332 43 0 21 chrY 11842975 11843022 -12870057 + (TAA)n Simple_repeat Simple_repeat 2 47 0 669 243 55 45 chrY 11843164 11843351 -12869728 + MER33 DNA MER1_type 5 198 -2387 2094 190 28 16 chrY 11843351 11843778 -12869301 - Tigger2a DNA MER2_type -1 433 2 669 243 55 45 chrY 11843778 11843899 -12869180 + MER33 DNA MER1_type 198 316 -8 1273 200 86 21 chrY 11843935 11844215 -12868864 + AluJo SINE Alu 1 298 -14 331 250 33 0 chrY 11844867 11844959 -12868120 + L1MC4 LINE L1 6611 6705 -1337 21 57 0 0 chrY 11844959 11844994 -12868085 + AT_rich Low_complexity Low_complexity 1 35 0 261 169 42 0 chrY 11845089 11845160 -12867919 + (TA)n Simple_repeat Simple_repeat 2 75 0 386 96 32 48 chrY 11845162 11845287 -12867792 + (TATAA)n Simple_repeat Simple_repeat 2 124 0 35 0 0 0 chrY 11845288 11845323 -12867756 + AT_rich Low_complexity Low_complexity 1 35 0 1743 182 13 3 chrY 11845613 11845920 -12867159 + AluSx SINE Alu 3 312 0 1481 216 138 35 chrY 11846109 11846432 -12866647 + MLT1D LTR MaLR 1 386 -119 3374 156 21 8 chrY 11846432 11846802 -12866277 + L1PA16 LINE L1 5535 5918 -248 2121 158 14 8 chrY 11846802 11847164 -12865915 + THE1B LTR MaLR 1 364 0 3374 156 21 8 chrY 11847164 11847415 -12865664 + L1PA16 LINE L1 5918 6164 -2 1481 216 138 35 chrY 11847415 11847549 -12865530 + MLT1D LTR MaLR 386 505 0 480 329 7 0 chrY 11847637 11847786 -12865293 - MER63A DNA MER1_type -3 207 58 396 303 27 1 chrY 11848760 11848891 -12864188 + MER63 DNA MER1_type 679 1663 -25 3784 173 32 32 chrY 11848971 11849846 -12863233 + L1PB4 LINE L1 5270 6144 -12 294 73 0 0 chrY 11850517 11850558 -12862521 + (A)n Simple_repeat Simple_repeat 1 41 0 2704 45 0 0 chrY 11851330 11851641 -12861438 + AluY SINE Alu 1 311 0 377 299 0 28 chrY 11852584 11852728 -12860351 - MER20 DNA MER1_type -64 155 16 1668 163 56 31 chrY 11852987 11853342 -12859737 + THE1B LTR MaLR 1 364 0 1815 174 7 0 chrY 11853634 11853939 -12859140 + AluSx SINE Alu 1 307 -5 2124 119 6 6 chrY 11853988 11854299 -12858780 + AluY SINE Alu 1 311 0 1072 76 44 0 chrY 11854299 11854508 -12858571 + GA-rich Low_complexity Low_complexity 1 218 0 250 143 82 0 chrY 11855049 11855098 -12857981 - LTR16A1 LTR ERVL 0 457 405 240 311 8 50 chrY 11855110 11855229 -12857850 - MIR SINE MIR 0 262 149 1734 202 20 5 chrY 11855239 11855640 -12857439 - L1PB4 LINE L1 -4 6152 5746 2147 117 0 26 chrY 11855872 11856179 -12856900 - AluSp SINE Alu -14 299 1 21 0 0 0 chrY 11856346 11856367 -12856712 + AT_rich Low_complexity Low_complexity 1 21 0 280 100 357 0 chrY 11856524 11856594 -12856485 + MER58 DNA MER1_type 168 262 -79 230 295 95 29 chrY 11856718 11856823 -12856256 - MIR SINE MIR -63 145 34 1936 159 10 0 chrY 11856926 11857234 -12855845 + AluY SINE Alu 1 311 0 1180 193 0 113 chrY 11857956 11858282 -12854797 + AluJo SINE Alu 1 289 -13 22201 153 23 31 chrY 11858388 11864885 -12848194 + L1PA8 LINE L1 8 6487 0 1295 236 119 85 chrY 11865690 11866410 -12846669 - LTR1B LTR ERV1 -81 745 1 1481 225 0 20 chrY 11867314 11867616 -12845463 + AluJb SINE Alu 1 296 -16 187 319 114 24 chrY 11868064 11868230 -12844849 - MIR SINE MIR -30 232 52 275 303 0 40 chrY 11868890 11868989 -12844090 - L2 LINE L2 -4 3309 3215 877 218 5 15 chrY 11870190 11870387 -12842692 - MER58A DNA MER1_type -3 221 27 195 42 0 0 chrY 11870496 11870520 -12842559 + (TTG)n Simple_repeat Simple_repeat 1 24 0 1399 186 56 11 chrY 11870631 11870929 -12842150 - AluSx SINE Alu 0 310 1 1411 192 4 25 chrY 11871153 11871434 -12841645 + AluJo SINE Alu 5 279 -33 408 40 0 0 chrY 11871438 11871488 -12841591 + (TAAA)n Simple_repeat Simple_repeat 2 51 0 2166 134 3 3 chrY 11872774 11873087 -12839992 - AluSq SINE Alu 0 313 1 21 36 0 0 chrY 11873836 11873864 -12839215 + AT_rich Low_complexity Low_complexity 1 28 0 378 291 0 0 chrY 11874803 11874975 -12838104 + (TA)n Simple_repeat Simple_repeat 2 173 0 332 284 40 80 chrY 11875219 11875568 -12837511 + L1MC4 LINE L1 7530 7864 -178 309 61 61 31 chrY 11875595 11875693 -12837386 + (TA)n Simple_repeat Simple_repeat 2 102 0 323 245 7 42 chrY 11875760 11875903 -12837176 + L1MC4 LINE L1 7905 8042 0 301 247 25 0 chrY 11876116 11876197 -12836882 - MARNA DNA Mariner -237 349 267 913 219 5 0 chrY 11876555 11876774 -12836305 - L1MA5A LINE L1 -23 6274 6055 180 0 0 0 chrY 11877305 11877325 -12835754 + (T)n Simple_repeat Simple_repeat 1 20 0 2225 103 3 7 chrY 11877539 11877895 -12835184 - AluY SINE Alu 0 355 1 1218 220 70 26 chrY 11878165 11878593 -12834486 + L1MB7 LINE L1 5734 6180 -4 211 298 0 0 chrY 11879349 11879396 -12833683 + (TATG)n Simple_repeat Simple_repeat 4 50 0 301 206 0 0 chrY 11879740 11879813 -12833266 - L1PA16 LINE L1 -3 6163 6091 938 269 136 34 chrY 11879920 11880448 -12832631 + MLT1E LTR MaLR 1 582 -11 1225 230 52 52 chrY 11880451 11880738 -12832341 + AluJo SINE Alu 3 289 -13 1454 202 40 4 chrY 11881203 11881480 -12831599 + AluJb SINE Alu 1 287 -25 486 0 0 0 chrY 11881495 11881549 -12831530 + (TA)n Simple_repeat Simple_repeat 2 55 0 793 139 17 17 chrY 11881684 11881864 -12831215 + GA-rich Low_complexity Low_complexity 1 180 0 225 0 0 0 chrY 11881969 11881994 -12831085 + (T)n Simple_repeat Simple_repeat 1 25 0 216 0 0 0 chrY 11882113 11882137 -12830942 + (TC)n Simple_repeat Simple_repeat 1 24 0 * 243 0 0 0 chrY 11882136 11882163 -12830916 + (CA)n Simple_repeat Simple_repeat 1 27 0 798 222 164 106 chrY 11882273 11882970 -12830109 - LTR1B LTR ERV1 -89 737 1 182 259 19 19 chrY 11883208 11883262 -12829817 + MIR SINE MIR 23 76 -132 2315 96 13 19 chrY 11883288 11883601 -12829478 - AluY SINE Alu 0 311 1 7163 55 12 0 chrY 11884157 11885242 -12827837 - L1PA3 LINE L1 -1 6154 5066 11559 42 1 1 chrY 11885242 11886724 -12826355 + L1PA3 LINE L1 3585 5066 -1080 1244 195 34 38 chrY 11886726 11886993 -12826086 - AluJo SINE Alu -17 295 30 495 209 0 0 chrY 11887053 11887163 -12825916 - L1MB1 LINE L1 -40 6128 6019 566 273 138 73 chrY 11887584 11888090 -12824989 - MLT1E2 LTR MaLR -8 618 80 456 171 34 17 chrY 11888474 11888591 -12824488 + MER4C LTR ERV1 1 119 -346 532 176 29 120 chrY 11888669 11888936 -12824143 + LTR59 LTR ERV1 136 375 -222 504 202 45 160 chrY 11888906 11889243 -12823836 + MER4C LTR ERV1 165 462 -3 * 192 316 20 31 chrY 11889323 11889421 -12823658 + L2 LINE L2 2995 3091 -181 180 303 15 45 chrY 11889509 11889575 -12823504 + L2 LINE L2 3241 3304 -9 273 303 0 0 chrY 11890337 11890436 -12822643 - MLT1E2 LTR MaLR -8 618 520 * 561 240 2 40 chrY 11890421 11890644 -12822435 + AluJ SINE Alu 81 260 -52 822 239 15 61 chrY 11890746 11890925 -12822154 - MLT1E2 LTR MaLR -374 252 87 1624 163 14 88 chrY 11890925 11891343 -12821736 - MLT1B LTR MaLR -1 389 3 822 239 15 61 chrY 11891343 11891427 -12821652 - MLT1E2 LTR MaLR -539 87 1 1769 171 31 3 chrY 11891636 11891928 -12821151 - AluSx SINE Alu -12 300 1 22 80 0 0 chrY 11891987 11892037 -12821042 + AT_rich Low_complexity Low_complexity 1 50 0 471 205 82 82 chrY 11892070 11892265 -12820814 - MER3 DNA MER1_type -5 204 10 10628 136 9 26 chrY 11893934 11895899 -12817180 + L1PA7 LINE L1 8 1943 -4518 * 19363 125 14 2 chrY 11895894 11899919 -12813160 + L1PA7 LINE L1 2381 6456 -13 664 228 7 7 chrY 11899946 11900095 -12812984 - MER58A DNA MER1_type -32 192 44 2453 202 94 65 chrY 11900128 11900934 -12812145 - MER21B LTR ERV1 -19 844 15 2635 132 51 6 chrY 11901844 11902307 -12810772 + L1PA11 LINE L1 5670 6153 -21 257 0 30 0 chrY 11902320 11902353 -12810726 + (CAA)n Simple_repeat Simple_repeat 2 35 0 970 199 167 9 chrY 11903278 11903499 -12809580 - AluJo SINE Alu -14 298 43 606 237 160 0 chrY 11903557 11903713 -12809366 - AluJo SINE Alu -82 230 50 496 252 0 9 chrY 11903753 11903860 -12809219 - FLAM_A SINE Alu -27 115 10 873 184 168 0 chrY 11903892 11904071 -12809008 - AluJo SINE Alu -92 220 12 201 324 14 27 chrY 11904534 11904608 -12808471 - MIR SINE MIR -73 189 117 1506 201 3 14 chrY 11904666 11904949 -12808130 + AluJo SINE Alu 9 288 -24 31 0 0 0 chrY 11905028 11905059 -12808020 + AT_rich Low_complexity Low_complexity 1 31 0 398 277 26 45 chrY 11905113 11905268 -12807811 + MIR SINE MIR 54 205 -57 1587 166 87 16 chrY 11906131 11906499 -12806580 + L1MC1 LINE L1 5934 6327 -6 344 176 0 0 chrY 11906499 11906567 -12806512 + MER58 DNA MER1_type 141 208 -2212 900 295 44 34 chrY 11907143 11907255 -12805824 + MLT2F LTR ERVL 6 115 -548 3512 186 66 14 chrY 11907255 11907996 -12805083 + LTR39 LTR ERV1 4 783 0 900 295 44 34 chrY 11907996 11908320 -12804759 + MLT2F LTR ERVL 115 464 -199 2498 131 78 7 chrY 11908363 11908797 -12804282 + MER4C LTR ERV1 1 465 0 1329 230 69 74 chrY 11909331 11909970 -12803109 - MER92B LTR ERV1 0 636 1 218 288 38 12 chrY 11910196 11910276 -12802803 - MIR SINE MIR -92 170 89 815 152 0 0 chrY 11912468 11912600 -12800479 - L1PA7 LINE L1 -1 6153 6022 1022 90 0 0 chrY 11912601 11912746 -12800333 + L1PA7 LINE L1 5806 5950 -204 547 141 11 0 chrY 11912741 11912833 -12800246 - L1PA7 LINE L1 -132 6022 5930 * 262 330 121 11 chrY 11913797 11913979 -12799100 - MIR SINE MIR -43 219 18 1185 253 75 0 chrY 11914287 11914623 -12798456 - AluJo SINE Alu 0 357 1 512 223 8 8 chrY 11915002 11915123 -12797956 + MER7A DNA MER2_type 12 130 -216 1250 216 41 0 chrY 11915165 11915434 -12797645 + MER7A DNA MER2_type 67 344 -2 3095 158 24 9 chrY 11915646 11916191 -12796888 + LTR24B LTR ERV1 4 556 -20 370 216 27 0 chrY 11916199 11916273 -12796806 + MLT1D LTR MaLR 13 88 -417 1366 242 18 26 chrY 11916555 11916939 -12796140 + MLT1D LTR MaLR 118 498 -7 238 289 24 24 chrY 11917292 11917375 -12795704 + MER5A DNA MER1_type 23 105 -84 310 229 0 49 chrY 11917445 11917587 -12795492 - MER5B DNA MER1_type -1 177 1 21 36 0 0 chrY 11917918 11917946 -12795133 + AT_rich Low_complexity Low_complexity 1 28 0 825 185 0 0 chrY 11919229 11919407 -12793672 + (ATG)n Simple_repeat Simple_repeat 1 178 0 575 216 6 0 chrY 11919424 11919586 -12793493 + (ATG)n Simple_repeat Simple_repeat 1 163 0 1771 203 70 7 chrY 11919930 11920244 -12792835 + L1MA9 LINE L1 5825 6175 -137 228 67 0 0 chrY 11920244 11920274 -12792805 + (CA)n Simple_repeat Simple_repeat 1 30 0 1771 203 70 7 chrY 11920274 11920387 -12792692 + L1MA9 LINE L1 6175 6279 -33 21 0 0 0 chrY 11920435 11920456 -12792623 + AT_rich Low_complexity Low_complexity 1 21 0 1336 134 0 10 chrY 11921527 11921729 -12791350 + AluSc SINE Alu 83 282 -27 316 247 22 22 chrY 11921729 11921818 -12791261 - L1MC4 LINE L1 -1340 6702 6614 395 143 58 7 chrY 11921821 11921975 -12791104 + (TA)n Simple_repeat Simple_repeat 2 163 0 180 0 0 0 chrY 11923201 11923221 -12789858 + (A)n Simple_repeat Simple_repeat 1 20 0 1929 133 25 35 chrY 11923524 11923891 -12789188 - L1MA4 LINE L1 -155 6145 5783 983 292 44 5 chrY 11923906 11924293 -12788786 - L1PBa LINE L1 -6461 402 1 * 1655 173 0 22 chrY 11924290 11924603 -12788476 - L1M1 LINE L1 -507 5798 5493 625 253 27 0 chrY 11924962 11925168 -12787911 - L1MB8 LINE L1 -248 5930 5750 2600 32 7 3 chrY 11925241 11925583 -12787496 + AluY SINE Alu 1 343 0 746 316 83 17 chrY 11925959 11926427 -12786652 + L1ME LINE L1 3 501 -5569 549 217 28 0 chrY 11926461 11926567 -12786512 - MER41D LTR ERV1 -5 552 444 * 1318 146 5 0 chrY 11926564 11926770 -12786309 - MER41D LTR ERV1 -347 210 4 366 23 0 0 chrY 11926794 11926837 -12786242 + (CA)n Simple_repeat Simple_repeat 1 43 0 730 278 75 44 chrY 11926866 11927740 -12785339 + L1ME LINE L1 593 1495 -4585 40880 49 23 2 chrY 11927996 11934012 -12779067 + L1PA2 LINE L1 9 6155 0 480 206 46 15 chrY 11934056 11934187 -12778892 + L1PA13 LINE L1 6029 6163 0 230 280 140 10 chrY 11934235 11934428 -12778651 + L1ME LINE L1 2065 2282 -3798 281 200 14 29 chrY 11934430 11934500 -12778579 + L1ME2 LINE L1 5656 5724 -440 2712 165 56 52 chrY 11934521 11935151 -12777928 + L1MA10 LINE L1 5703 6334 0 751 261 37 69 chrY 11935186 11935592 -12777487 + L1ME2 LINE L1 5762 6154 -10 257 200 0 38 chrY 11936263 11936343 -12776736 + L1MA4 LINE L1 6224 6300 0 1081 200 0 19 chrY 11937090 11937325 -12775754 - AluSg/x SINE Alu 0 306 76 320 0 0 24 chrY 11937351 11937392 -12775687 + (TTA)n Simple_repeat Simple_repeat 3 42 0 7151 52 0 0 chrY 11937392 11938355 -12774724 - L1PA3 LINE L1 -18 6137 5176 21 57 0 0 chrY 11938419 11938454 -12774625 + AT_rich Low_complexity Low_complexity 1 35 0 432 250 0 0 chrY 11938674 11938762 -12774317 + AluS SINE Alu 1 88 -215 327 314 26 13 chrY 11938783 11938939 -12774140 - L1ME LINE L1 -5910 160 3 2620 29 7 3 chrY 11939315 11939655 -12773424 - AluY SINE Alu 0 341 1 625 253 27 0 chrY 11939728 11939934 -12773145 + L1MB8 LINE L1 5750 5966 -248 1655 173 0 22 chrY 11940293 11940606 -12772473 + L1M1 LINE L1 5493 5798 -507 983 292 44 5 chrY 11940603 11940990 -12772089 + L1PBa LINE L1 1 402 -6461 * 1929 133 25 35 chrY 11941005 11941372 -12771707 + L1MA4 LINE L1 5783 6145 -155 180 0 0 0 chrY 11941675 11941695 -12771384 + (T)n Simple_repeat Simple_repeat 1 20 0 395 143 58 7 chrY 11942921 11943075 -12770004 + (TA)n Simple_repeat Simple_repeat 2 163 0 324 244 22 22 chrY 11943078 11943168 -12769911 + L1MC4 LINE L1 6614 6703 -1339 1336 134 0 10 chrY 11943169 11943371 -12769708 - AluSc SINE Alu -27 282 83 21 0 0 0 chrY 11944442 11944463 -12768616 + AT_rich Low_complexity Low_complexity 1 21 0 1771 203 70 7 chrY 11944511 11944624 -12768455 - L1MA9 LINE L1 -33 6279 6175 228 67 0 0 chrY 11944624 11944654 -12768425 + (TG)n Simple_repeat Simple_repeat 1 30 0 1771 203 70 7 chrY 11944654 11944968 -12768111 - L1MA9 LINE L1 -137 6175 5825 575 216 6 0 chrY 11945312 11945474 -12767605 + (CAT)n Simple_repeat Simple_repeat 1 163 0 843 183 0 0 chrY 11945491 11945671 -12767408 + (CAT)n Simple_repeat Simple_repeat 1 180 0 21 36 0 0 chrY 11946955 11946983 -12766096 + AT_rich Low_complexity Low_complexity 1 28 0 310 229 0 49 chrY 11947314 11947456 -12765623 + MER5B DNA MER1_type 1 177 -1 405 0 0 0 chrY 11947778 11947823 -12765256 + (TA)n Simple_repeat Simple_repeat 1 45 0 424 287 8 8 chrY 11948600 11948722 -12764357 - MLT1E1 LTR MaLR -2 652 531 415 314 94 68 chrY 11948729 11949124 -12763955 - MLT1E1 LTR MaLR -174 419 15 1505 220 0 0 chrY 11949642 11949937 -12763142 + AluJb SINE Alu 5 299 -13 464 228 9 0 chrY 11950014 11950128 -12762951 - L1MB8 LINE L1 -1 6177 6063 321 291 122 35 chrY 11950308 11950480 -12762599 - MIR SINE MIR -18 244 58 1422 197 17 17 chrY 11950498 11950797 -12762282 - AluSx SINE Alu -4 308 10 549 216 95 14 chrY 11950895 11951043 -12762036 - MLT1F1 LTR MaLR -2 565 406 4354 95 27 7 chrY 11951049 11952063 -12761016 - MER11A LTR ERVK 0 1266 1 312 307 32 29 chrY 11952071 11952209 -12760870 - MLT1E LTR MaLR -164 427 252 1397 224 28 33 chrY 11952467 11952856 -12760223 - L1PB4 LINE L1 -5 6151 5765 1983 167 46 0 chrY 11952891 11953239 -12759840 - THE1B LTR MaLR 0 364 1 577 324 88 72 chrY 11954269 11955016 -12758063 + L2 LINE L2 2369 3165 -148 2257 136 25 3 chrY 11955016 11955383 -12757696 + THE1C LTR MaLR 1 375 0 577 324 88 72 chrY 11955383 11955520 -12757559 + L2 LINE L2 3165 3298 -15 1471 194 104 15 chrY 11955524 11956126 -12756953 + LTR34 LTR ERV1 2 699 0 283 264 35 11 chrY 11956206 11956293 -12756786 - MER5B DNA MER1_type -88 90 2 547 187 47 0 chrY 11957049 11957156 -12755923 - FLAM_C SINE Alu -11 132 21 245 184 0 0 chrY 11957867 11957905 -12755174 + MER58 DNA MER1_type 2382 2419 -1 309 316 77 13 chrY 11958279 11958434 -12754645 - L1M4 LINE L1 -2480 3666 3502 747 33 0 0 chrY 11959374 11959464 -12753615 + (CAATA)n Simple_repeat Simple_repeat 3 92 0 1940 171 8 26 chrY 11960860 11961211 -12751868 - THE1B LTR MaLR -3 361 17 2556 187 19 0 chrY 11961337 11961807 -12751272 + L1PA16 LINE L1 5679 6157 -9 780 129 0 0 chrY 11962615 11962739 -12750340 + (GGAA)n Simple_repeat Simple_repeat 2 125 0 1538 208 7 3 chrY 11962782 11963075 -12750004 - AluJb SINE Alu -16 296 3 275 314 131 85 chrY 11963466 11963925 -12749154 + L2 LINE L2 2825 3304 -9 2934 188 45 5 chrY 11964107 11964731 -12748348 - MER39B LTR ERV1 -1 652 4 3940 150 1 27 chrY 11965873 11966335 -12746744 - L1PA14 LINE L1 -224 5937 5497 2524 54 0 10 chrY 11966335 11966649 -12746430 - AluY SINE Alu 0 311 1 3940 150 1 27 chrY 11966649 11966879 -12746200 - L1PA14 LINE L1 -664 5497 5263 869 148 13 0 chrY 11966985 11967140 -12745939 + L1PA13 LINE L1 6007 6163 0 2132 107 0 7 chrY 11967145 11967455 -12745624 + AluY SINE Alu 1 308 -3 599 261 85 55 chrY 11967653 11968052 -12745027 - HAL1b LINE L1 -357 991 581 333 276 149 44 chrY 11968100 11968281 -12744798 - HAL1b LINE L1 -874 474 275 3895 140 36 57 chrY 11968372 11968955 -12744124 + L1PA13 LINE L1 5365 5928 -235 2909 171 19 26 chrY 11968955 11969539 -12743540 + LTR22 LTR ERVK 1 580 0 3895 140 36 57 chrY 11969539 11969760 -12743319 + L1PA13 LINE L1 5928 6152 -11 270 0 0 0 chrY 11970036 11970066 -12743013 + (T)n Simple_repeat Simple_repeat 1 30 0 197 32 0 32 chrY 11970228 11970259 -12742820 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 1739 178 41 26 chrY 11970532 11970874 -12742205 - THE1B LTR MaLR -17 347 1 1868 159 0 14 chrY 11971009 11971349 -12741730 - AluY SINE Alu 0 311 1 12780 51 1 0 chrY 11971387 11973763 -12739316 + L1PA3 LINE L1 3772 6155 0 243 0 0 0 chrY 11973772 11973799 -12739280 + (CA)n Simple_repeat Simple_repeat 2 28 0 1782 158 107 9 chrY 11975581 11975909 -12737170 - MSTA LTR MaLR -68 360 1 200 282 26 39 chrY 11975913 11975991 -12737088 - L2 LINE L2 -547 2767 2691 864 176 39 0 chrY 11976041 11976194 -12736885 - AluSc SINE Alu -12 297 139 1346 187 8 4 chrY 11977411 11977678 -12735401 - L1PA16 LINE L1 -4 6162 5895 1104 214 24 0 chrY 11977741 11977993 -12735086 - L1PA16 LINE L1 -258 5908 5651 334 231 14 0 chrY 11978007 11978094 -12734985 - L1MC1 LINE L1 -11 6333 6241 1358 172 37 0 chrY 11978235 11978503 -12734576 - L1MC1 LINE L1 -1 6332 6055 284 138 185 0 chrY 11978503 11978568 -12734511 + MADE1 DNA Mariner 4 80 0 334 148 0 0 chrY 11978569 11978623 -12734456 - L1MC2 LINE L1 -282 6062 6009 305 150 17 0 chrY 11978633 11978693 -12734386 - L1MC2 LINE L1 -682 5492 5432 318 26 0 0 chrY 11979393 11979432 -12733647 + (ATG)n Simple_repeat Simple_repeat 3 41 0 277 323 170 34 chrY 11980227 11980673 -12732406 - L2 LINE L2 -945 2369 1863 345 24 0 0 chrY 11980718 11980760 -12732319 + (TA)n Simple_repeat Simple_repeat 2 43 0 591 193 7 76 chrY 11981058 11981101 -12731978 - FLAM_C SINE Alu -177 135 91 2141 164 6 3 chrY 11981101 11981460 -12731619 + THE1B LTR MaLR 1 360 -4 591 193 7 76 chrY 11981460 11981561 -12731518 - FLAM_C SINE Alu -221 91 1 907 250 10 0 chrY 11981995 11982191 -12730888 + MER58A DNA MER1_type 27 224 0 1428 101 0 15 chrY 11982799 11982998 -12730081 + AluY SINE Alu 1 196 -115 1555 161 0 4 chrY 11983255 11983491 -12729588 - AluSg SINE Alu -75 235 1 180 111 0 0 chrY 11983914 11983941 -12729138 + (CATATA)n Simple_repeat Simple_repeat 1 27 0 4229 141 7 3 chrY 11983990 11984677 -12728402 - L1PA10 LINE L1 -3 6165 5476 3670 67 6 2 chrY 11984704 11985184 -12727895 - L1PA5 LINE L1 -17 6137 5656 32224 92 10 1 chrY 11985187 11989656 -12723423 - L1PA5 LINE L1 -1635 4511 1 2900 169 48 5 chrY 11989625 11990787 -12722292 - L1P4 LINE L1 -643 5525 4081 * 281 290 28 0 chrY 11990840 11990947 -12722132 + (TA)n Simple_repeat Simple_repeat 2 111 0 253 91 0 0 chrY 11990947 11990991 -12722088 + LTR66 LTR ERVL 398 441 -169 249 57 0 0 chrY 11991013 11991048 -12722031 + (GA)n Simple_repeat Simple_repeat 2 36 0 277 283 50 40 chrY 11991053 11991152 -12721927 - L2 LINE L2 -556 2758 2659 226 329 13 0 chrY 11991505 11991581 -12721498 + L2 LINE L2 2658 2734 -580 596 235 90 97 chrY 11991602 11992078 -12721001 - LTR8 LTR ERV1 -15 712 240 5552 155 5 18 chrY 11992534 11993501 -12719578 + HSMAR2 DNA Mariner 9 963 -339 1748 222 85 26 chrY 11993498 11993967 -12719112 - LTR22 LTR ERVK -12 497 1 * 1810 128 86 9 chrY 11993967 11994294 -12718785 + HSMAR2 DNA Mariner 949 1300 -2 1835 178 0 3 chrY 11994882 11995186 -12717893 - AluSx SINE Alu -9 303 1 537 267 113 13 chrY 11995528 11995937 -12717142 + MLT1C LTR MaLR 1 466 -1 556 286 18 24 chrY 11996614 11996782 -12716297 + MER5A DNA MER1_type 2 168 -21 252 188 0 0 chrY 11997910 11997979 -12715100 + CT-rich Low_complexity Low_complexity 2 70 0 675 37 0 0 chrY 11998007 11998089 -12714990 + (GAAA)n Simple_repeat Simple_repeat 4 85 0 29 60 0 0 chrY 11999372 11999422 -12713657 + AT_rich Low_complexity Low_complexity 1 50 0 370 223 32 11 chrY 11999479 11999573 -12713506 - AluSp/q SINE Alu -3 300 205 872 299 42 8 chrY 11999973 12000237 -12712842 + MER58 DNA MER1_type 2 274 -2146 309 256 37 0 chrY 12000675 12000757 -12712322 + MER53 DNA DNA 3 87 -102 1812 177 17 8 chrY 12000759 12001115 -12711964 + LTR24C LTR ERV1 1 359 -276 314 123 18 0 chrY 12001140 12001197 -12711882 + LTR24B LTR ERV1 514 571 -5 213 250 0 0 chrY 12001211 12001259 -12711820 + (TA)n Simple_repeat Simple_repeat 1 48 0 246 62 0 0 chrY 12001259 12001291 -12711788 + (TG)n Simple_repeat Simple_repeat 1 32 0 5109 113 9 0 chrY 12002022 12002766 -12710313 + L1PA8 LINE L1 5320 6070 -102 27 0 0 0 chrY 12003122 12003149 -12709930 + AT_rich Low_complexity Low_complexity 1 27 0 25 51 0 0 chrY 12003325 12003364 -12709715 + AT_rich Low_complexity Low_complexity 1 39 0 1619 194 20 0 chrY 12003421 12003715 -12709364 - AluSx SINE Alu -12 300 1 212 254 0 15 chrY 12003750 12003817 -12709262 + (TATG)n Simple_repeat Simple_repeat 2 67 0 1056 274 21 80 chrY 12004158 12004585 -12708494 + MLT2B1 LTR ERVL 7 408 -112 529 264 25 7 chrY 12004586 12004837 -12708242 + MLT2B1 LTR ERVL 267 422 -98 * 723 271 37 4 chrY 12004836 12005118 -12707961 + MLT2B1 LTR ERVL 269 462 -58 704 271 55 17 chrY 12005634 12005815 -12707264 + MER20 DNA MER1_type 31 218 -1 247 153 68 0 chrY 12006083 12006142 -12706937 - MLT2B1 LTR ERVL 0 520 458 490 133 28 44 chrY 12006142 12006257 -12706822 + (TAGA)n Simple_repeat Simple_repeat 1 113 -65 1646 187 50 22 chrY 12006257 12006621 -12706458 - THE1C LTR MaLR -1 374 1 490 133 28 44 chrY 12006621 12006686 -12706393 + (TAGA)n Simple_repeat Simple_repeat 113 178 0 1085 201 138 68 chrY 12006686 12007070 -12706009 - MLT2B1 LTR ERVL -19 501 91 357 208 13 19 chrY 12007139 12007298 -12705781 + (TCTA)n Simple_repeat Simple_repeat 1 158 0 275 130 74 0 chrY 12007299 12007353 -12705726 + MLT2B1 LTR ERVL 463 520 0 266 180 79 34 chrY 12007353 12007439 -12705640 - MLT2B1 LTR ERVL -430 90 1 2356 202 14 8 chrY 12007839 12008343 -12704736 + L1MA4 LINE L1 5425 5931 -369 3966 126 46 15 chrY 12008343 12009327 -12703752 - MER11A LTR ERVK 0 1266 12 1671 194 11 13 chrY 12009327 12009703 -12703376 + L1MA4 LINE L1 5914 6288 -12 7169 53 1 0 chrY 12009750 12011221 -12701858 - L1PA3 LINE L1 -3 6152 4681 1482 239 31 0 chrY 12011788 12012177 -12700902 - L1 LINE L1 -1169 4977 4577 1494 210 50 17 chrY 12012177 12012552 -12700527 + L1PA16 LINE L1 5758 6146 -20 24 0 0 0 chrY 12013459 12013483 -12699596 + AT_rich Low_complexity Low_complexity 1 24 0 207 0 0 0 chrY 12013712 12013752 -12699327 + (TG)n Simple_repeat Simple_repeat 1 63 0 207 0 0 0 chrY 12013752 12013775 -12699304 + (TG)n Simple_repeat Simple_repeat 2 24 0 420 283 190 26 chrY 12013813 12014314 -12698765 - L1MC4a LINE L1 -1895 5913 5331 222 37 0 0 chrY 12015758 12015785 -12697294 + (GAAAA)n Simple_repeat Simple_repeat 4 30 0 7328 49 2 11 chrY 12015831 12016734 -12696345 - MER11D LTR ERVK -1 896 2 7326 50 25 3 chrY 12016735 12017684 -12695395 - HERVK11D LTR ERVK 0 7752 6783 * 54585 46 2 4 chrY 12017674 12024278 -12688801 - HERVK11D LTR ERVK -1161 6591 1 7390 58 1 0 chrY 12024278 12025174 -12687905 - MER11D LTR ERVK 0 897 1 535 234 156 16 chrY 12025195 12025439 -12687640 + L1ME3A LINE L1 5412 5689 -473 942 292 41 10 chrY 12025488 12025879 -12687200 + L1ME3A LINE L1 5763 6165 -5 304 22 22 22 chrY 12026332 12026378 -12686701 + (TA)n Simple_repeat Simple_repeat 1 46 0 279 173 0 0 chrY 12026816 12026868 -12686211 + (TA)n Simple_repeat Simple_repeat 2 53 0 270 289 0 0 chrY 12026870 12026960 -12686119 + L1MC4 LINE L1 6614 6703 -1339 254 219 0 62 chrY 12026966 12027062 -12686017 + L1MC4 LINE L1 6614 6703 -1339 301 337 0 0 chrY 12027074 12027166 -12685913 + L1MC4 LINE L1 6614 6705 -1337 * 308 279 47 0 chrY 12027140 12027226 -12685853 - L1MC4 LINE L1 -1339 6703 6614 460 265 60 0 chrY 12027276 12027442 -12685637 + MER45A DNA AcHobo 3 178 0 716 256 0 0 chrY 12027613 12027769 -12685310 - FRAM SINE Alu -20 156 1 26 30 0 0 chrY 12028193 12028226 -12684853 + AT_rich Low_complexity Low_complexity 1 33 0 1538 211 7 0 chrY 12028243 12028546 -12684533 - AluSx SINE Alu -7 305 1 918 156 0 0 chrY 12028546 12028681 -12684398 - AluSq/x SINE Alu -177 135 1 30 45 0 0 chrY 12029063 12029107 -12683972 + AT_rich Low_complexity Low_complexity 1 44 0 1678 143 169 53 chrY 12029156 12029347 -12683732 - MSTA LTR MaLR 0 428 261 2004 130 0 10 chrY 12029347 12029646 -12683433 - AluY SINE Alu -11 300 5 1678 143 169 53 chrY 12029646 12029833 -12683246 - MSTA LTR MaLR -167 261 6 202 57 0 57 chrY 12030631 12030666 -12682413 + (TTTTTG)n Simple_repeat Simple_repeat 2 34 0 429 324 43 0 chrY 12030744 12030883 -12682196 - MER5A DNA MER1_type -26 163 19 6414 107 28 2 chrY 12031290 12032199 -12680880 + L1PA7 LINE L1 4378 5328 -826 279 0 0 0 chrY 12032199 12032230 -12680849 + (CA)n Simple_repeat Simple_repeat 2 32 0 6414 107 28 2 chrY 12032230 12032792 -12680287 + L1PA7 LINE L1 5328 5874 -280 1379 186 96 15 chrY 12034275 12034609 -12678470 + MLT1A1 LTR MaLR 5 365 0 521 189 72 9 chrY 12035615 12035726 -12677353 - MER5A DNA MER1_type -67 122 5 558 131 0 0 chrY 12036005 12036089 -12676990 + L1PA6 LINE L1 5784 5867 -287 321 215 21 0 chrY 12037154 12037247 -12675832 + (TA)n Simple_repeat Simple_repeat 1 95 0 1058 215 45 55 chrY 12037277 12037588 -12675491 + AluJo SINE Alu 1 308 -4 1504 202 58 19 chrY 12038031 12038392 -12674687 - THE1C LTR MaLR 0 375 1 2248 189 2 39 chrY 12038718 12039060 -12674019 + L1MB5 LINE L1 5702 6022 -152 1492 179 19 45 chrY 12039060 12039372 -12673707 - AluSx SINE Alu -8 304 1 2248 189 2 39 chrY 12039372 12039520 -12673559 + L1MB5 LINE L1 6022 6174 0 1794 158 7 7 chrY 12039690 12039987 -12673092 + AluSq SINE Alu 12 308 -5 1029 278 11 26 chrY 12040043 12040252 -12672827 - L1MD3 LINE L1 -10 7985 7783 1347 215 77 14 chrY 12040252 12040605 -12672474 - THE1C LTR MaLR 0 375 1 1029 278 11 26 chrY 12040605 12040777 -12672302 - L1MD3 LINE L1 -212 7783 7610 486 264 9 9 chrY 12042252 12042362 -12670717 + FLAM_A SINE Alu 8 117 -25 687 229 37 65 chrY 12043978 12044407 -12668672 - MLT1A1 LTR MaLR 0 374 1 877 227 5 16 chrY 12045035 12045229 -12667850 - AluJb SINE Alu -21 291 100 1618 186 93 18 chrY 12045275 12045608 -12667471 - THE1B LTR MaLR 0 364 7 1065 76 23 0 chrY 12045619 12045883 -12667196 + (TCTA)n Simple_repeat Simple_repeat 1 270 0 26 0 0 0 chrY 12046151 12046177 -12666902 + AT_rich Low_complexity Low_complexity 1 26 0 802 134 91 64 chrY 12046182 12046369 -12666710 + MER21A LTR ERV1 9 200 -731 1992 163 45 6 chrY 12046408 12046765 -12666314 + THE1C LTR MaLR 1 371 -4 2026 202 104 104 chrY 12046774 12047507 -12665572 + MER21A LTR ERV1 182 914 -17 433 219 14 26 chrY 12047837 12047965 -12665114 + MSTA LTR MaLR 241 426 -2 1559 221 92 22 chrY 12048153 12048481 -12664598 + MLT1D LTR MaLR 1 305 -349 1815 165 74 6 chrY 12048481 12048820 -12664259 - THE1B LTR MaLR 0 364 3 1559 221 92 22 chrY 12048820 12048956 -12664123 + MLT1D LTR MaLR 305 654 0 2323 184 63 11 chrY 12049096 12049559 -12663520 + LTR45B LTR ERV1 3 489 0 11514 86 11 3 chrY 12049877 12052656 -12660423 - L1PA6 LINE L1 -7 6147 3207 213 250 16 31 chrY 12053392 12053456 -12659623 + GA-rich Low_complexity Low_complexity 3 65 0 552 284 23 23 chrY 12053795 12053971 -12659108 + MER58A DNA MER1_type 32 207 -17 826 172 17 13 chrY 12054166 12054405 -12658674 + GA-rich Low_complexity Low_complexity 1 240 0 847 201 7 5 chrY 12054430 12054870 -12658209 + GA-rich Low_complexity Low_complexity 1 440 0 775 183 11 0 chrY 12054903 12055078 -12658001 + GA-rich Low_complexity Low_complexity 3 179 0 1690 202 16 47 chrY 12055459 12055846 -12657233 + THE1C LTR MaLR 1 375 0 565 180 69 4 chrY 12055886 12056048 -12657031 + MSTA LTR MaLR 2 193 -208 1885 152 0 7 chrY 12056048 12056331 -12656748 + AluSq SINE Alu 1 281 -32 701 23 0 11 chrY 12056331 12056419 -12656660 + (GAAA)n Simple_repeat Simple_repeat 4 90 0 372 285 61 71 chrY 12057395 12057721 -12655358 + L1M4 LINE L1 4455 4777 -1369 2106 134 0 0 chrY 12058007 12058313 -12654766 - AluY SINE Alu -5 306 1 1219 223 59 14 chrY 12058355 12058532 -12654547 - AluJo SINE Alu -1 301 105 1912 180 0 0 chrY 12058532 12058838 -12654241 + AluSx SINE Alu 2 307 -5 1219 223 59 14 chrY 12058838 12058947 -12654132 - AluJo SINE Alu -197 105 2 269 352 45 19 chrY 12058961 12059225 -12653854 + L1MCc LINE L1 130 400 -6023 1691 245 76 14 chrY 12059537 12059598 -12653481 + MER44D DNA MER2_type 78 134 -2353 1474 171 72 39 chrY 12059598 12059961 -12653118 - THE1C LTR MaLR 0 375 1 1691 245 76 14 chrY 12059961 12060344 -12652735 + MER44D DNA MER2_type 134 605 0 438 223 27 40 chrY 12060412 12060446 -12652633 + MER3 DNA MER1_type 9 42 -120 1668 214 17 8 chrY 12060446 12060802 -12652277 - MLT1A1 LTR MaLR -4 361 3 438 223 27 40 chrY 12060802 12060915 -12652164 + MER3 DNA MER1_type 42 154 -55 40043 79 2 1 chrY 12060917 12067067 -12646012 - L1PA4 LINE L1 0 6155 1 2481 166 80 9 chrY 12067227 12067666 -12645413 + MER1A DNA MER1_type 60 529 0 292 279 0 0 chrY 12067739 12067807 -12645272 - MER58A DNA MER1_type -123 101 34 336 292 0 0 chrY 12067831 12067961 -12645118 + (TATATG)n Simple_repeat Simple_repeat 3 132 0 810 211 25 13 chrY 12068004 12068286 -12644793 - THE1B LTR MaLR -10 354 1 297 283 38 44 chrY 12068374 12068533 -12644546 + L1ME LINE L1 5514 5671 -495 40524 56 24 2 chrY 12068535 12074548 -12638531 + L1PA3 LINE L1 1 6151 -4 445 264 20 0 chrY 12074566 12074714 -12638365 + L1ME LINE L1 5649 5799 -367 796 137 132 58 chrY 12074714 12074895 -12638184 - THE1B LTR MaLR 0 364 180 303 319 0 9 chrY 12074935 12075048 -12638031 - L1ME3A LINE L1 -51 6119 6008 23 33 0 0 chrY 12075220 12075250 -12637829 + AT_rich Low_complexity Low_complexity 1 30 0 416 390 8 24 chrY 12076543 12076794 -12636285 + L2 LINE L2 2562 2808 -506 1277 202 0 67 chrY 12076944 12077256 -12635823 - AluJo SINE Alu -21 291 1 25 0 0 0 chrY 12077575 12077600 -12635479 + AT_rich Low_complexity Low_complexity 1 25 0 1038 206 9 9 chrY 12077609 12077832 -12635247 - MLT1B LTR MaLR -8 382 160 1750 191 15 50 chrY 12077834 12078115 -12634964 - MLT1B LTR MaLR 0 396 128 2513 58 3 13 chrY 12078115 12078426 -12634653 - AluY SINE Alu -2 309 2 1750 191 15 50 chrY 12078426 12078550 -12634529 - MLT1B LTR MaLR -268 128 1 185 279 23 81 chrY 12079860 12079946 -12633133 + L3 LINE CR1 264 344 -1233 492 117 36 7 chrY 12080104 12080241 -12632838 + (TAGA)n Simple_repeat Simple_repeat 4 144 0 737 258 0 6 chrY 12080997 12081164 -12631915 - FRAM SINE Alu -13 163 1 2389 172 9 5 chrY 12081259 12081683 -12631396 - MSTA LTR MaLR -2 426 1 14130 131 37 30 chrY 12082180 12084661 -12628418 - L1P3 LINE L1 -579 5593 3100 2739 204 19 5 chrY 12084661 12085233 -12627846 - LTR22 LTR ERVK 0 580 1 14130 131 37 30 chrY 12085233 12085506 -12627573 - L1P3 LINE L1 -3072 3100 2831 581 204 75 0 chrY 12085508 12085655 -12627424 + MLT1D LTR MaLR 15 172 -333 822 273 5 0 chrY 12085681 12085879 -12627200 - AluJo SINE Alu -27 285 87 11604 143 9 20 chrY 12086055 12086149 -12626930 - L1P LINE L1 -2357 3789 3695 255 31 0 0 chrY 12086149 12086181 -12626898 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 11604 143 9 20 chrY 12086181 12087669 -12625410 - L1P LINE L1 -2451 3695 2232 1957 125 7 0 chrY 12087669 12088021 -12625058 - AluY SINE Alu 0 354 1 11604 143 9 20 chrY 12088021 12088492 -12624587 - L1P LINE L1 -3914 2232 1757 5503 134 10 6 chrY 12088489 12089369 -12623710 + L1PA7 LINE L1 3804 4687 -1459 * 6278 100 1 9 chrY 12089369 12090634 -12622445 + L1PA7 LINE L1 4897 6154 0 277 140 0 70 chrY 12090849 12090906 -12622173 + MER116 DNA Mariner 27 79 -1 1940 158 26 42 chrY 12091229 12091469 -12621610 - THE1C LTR MaLR -1 374 141 591 108 0 0 chrY 12091469 12091562 -12621517 + (TGGA)n Simple_repeat Simple_repeat 3 95 0 1940 158 26 42 chrY 12091562 12091701 -12621378 - THE1C LTR MaLR -234 141 1 186 43 0 0 chrY 12091791 12091814 -12621265 + (T)n Simple_repeat Simple_repeat 1 23 0 201 217 150 0 chrY 12091830 12091890 -12621189 + L3b LINE CR1 1319 1387 -196 637 176 7 7 chrY 12093072 12093220 -12619859 + (TGGA)n Simple_repeat Simple_repeat 2 149 0 264 136 91 0 chrY 12093239 12093305 -12619774 + (TGGA)n Simple_repeat Simple_repeat 1 72 0 568 323 41 9 chrY 12093712 12093932 -12619147 - MIR SINE MIR 0 262 36 343 254 0 0 chrY 12093948 12094015 -12619064 + MER106B DNA MER1_type 4 70 -989 1143 279 110 13 chrY 12094133 12094595 -12618484 + MLT1E LTR MaLR 76 582 -11 875 138 0 0 chrY 12095045 12095183 -12617896 - MLT2A2 LTR ERVL -315 138 1 411 162 14 0 chrY 12095200 12095274 -12617805 + MLT1A1 LTR MaLR 12 86 -279 201 121 0 0 chrY 12095732 12095765 -12617314 + (A)n Simple_repeat Simple_repeat 1 33 0 387 0 0 0 chrY 12096073 12096116 -12616963 + (TTA)n Simple_repeat Simple_repeat 3 45 0 5880 96 1 7 chrY 12096116 12096930 -12616149 - L1PA6 LINE L1 -18 6136 5328 2114 158 11 29 chrY 12097301 12097675 -12615404 - THE1C LTR MaLR -8 367 1 347 310 61 26 chrY 12097680 12097909 -12615170 - L1ME3A LINE L1 -147 6023 5787 1013 195 133 13 chrY 12098311 12098537 -12614542 - MSTA LTR MaLR -175 253 1 411 289 49 15 chrY 12098539 12098743 -12614336 - L1ME3A LINE L1 -763 5383 5173 404 224 8 40 chrY 12099011 12099136 -12613943 - L1MA7 LINE L1 -11 6280 6160 231 229 0 0 chrY 12099140 12099201 -12613878 - L1MA7 LINE L1 -242 6049 5989 1391 220 24 7 chrY 12099267 12099563 -12613516 - AluJb SINE Alu -11 301 1 270 233 0 0 chrY 12101716 12101776 -12611303 - MLT1A1 LTR MaLR -3 362 303 * 1060 205 113 0 chrY 12101768 12101997 -12611082 - LTR19A LTR ERV1 -231 255 1 19947 105 36 5 chrY 12101997 12105034 -12608045 - LTR19A-int LTR ERV1 0 5586 2455 448 224 112 0 chrY 12105045 12105161 -12607918 + LTR8 LTR ERV1 129 257 -434 592 68 0 0 chrY 12105161 12105249 -12607830 - LTR19-int LTR ERV1 -3329 2257 2170 307 173 0 0 chrY 12105251 12105303 -12607776 + L1MC4 LINE L1 6652 6703 -1339 9721 127 46 14 chrY 12105306 12106863 -12606216 - MER4B-int LTR ERV1 -3761 1825 219 1335 158 75 4 chrY 12106863 12107103 -12605976 - LTR19A LTR ERV1 -229 257 1 22 35 0 0 chrY 12107114 12107143 -12605936 + AT_rich Low_complexity Low_complexity 1 29 0 332 204 7 20 chrY 12107221 12107341 -12605738 + (TA)n Simple_repeat Simple_repeat 2 121 -25 1637 188 32 12 chrY 12107341 12107681 -12605398 - MER7A DNA MER2_type -1 345 1 332 204 7 20 chrY 12107681 12107707 -12605372 + (TA)n Simple_repeat Simple_repeat 121 146 0 1926 151 125 31 chrY 12107759 12108234 -12604845 - MER4B LTR ERV1 0 766 102 222 338 29 0 chrY 12108379 12108447 -12604632 - MIR SINE MIR -114 148 79 322 163 48 7 chrY 12108526 12108673 -12604406 + (TA)n Simple_repeat Simple_repeat 2 154 0 192 77 0 0 chrY 12110011 12110037 -12603042 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1578 174 10 24 chrY 12110070 12110364 -12602715 + AluSx SINE Alu 5 294 -18 254 264 94 38 chrY 12110626 12110732 -12602347 - L1M4 LINE L1 -3349 2797 2686 2307 186 35 85 chrY 12110818 12111534 -12601545 + LTR8 LTR ERV1 1 680 -11 830 248 97 18 chrY 12111818 12112473 -12600606 + L1ME2 LINE L1 5118 5851 -313 2073 166 111 9 chrY 12112594 12113035 -12600044 + LTR19A LTR ERV1 1 486 0 2561 163 33 4 chrY 12113035 12113515 -12599564 + HERVFH19I LTR ERV1 1 494 -7225 4633 127 18 0 chrY 12113515 12114191 -12598888 + LTR12 LTR ERV1 1 688 0 55085 110 8 6 chrY 12114191 12122572 -12590507 + HERV9 LTR ERV1 1 8399 0 2518 105 169 141 chrY 12122572 12123363 -12589716 + LTR12 LTR ERV1 1 2438 0 * 7156 119 51 22 chrY 12123363 12124656 -12588423 + HERVFH19I LTR ERV1 477 1888 -3698 204 67 0 0 chrY 12124656 12124686 -12588393 + (TG)n Simple_repeat Simple_repeat 1 30 0 7156 119 51 22 chrY 12124686 12125088 -12587991 + HERVFH19I LTR ERV1 1888 2277 -3309 2702 73 116 0 chrY 12125113 12125537 -12587542 + HERVFH19I LTR ERV1 2493 2965 -2621 604 99 79 0 chrY 12125537 12125638 -12587441 + LTR19A LTR ERV1 323 431 -55 729 182 0 0 chrY 12125639 12125760 -12587319 - AluSq SINE Alu -59 254 134 2075 128 3 7 chrY 12125760 12126058 -12587021 - AluY SINE Alu -1 310 14 557 233 8 0 chrY 12126116 12126249 -12586830 + L1ME2 LINE L1 6016 6149 -15 236 271 0 0 chrY 12126553 12126623 -12586456 + (TA)n Simple_repeat Simple_repeat 1 70 0 1745 74 9 0 chrY 12126623 12126853 -12586226 - L1PA7 LINE L1 -13 6141 5910 1855 108 0 15 chrY 12126854 12127122 -12585957 + AluY SINE Alu 44 307 -4 1391 166 10 37 chrY 12127122 12127417 -12585662 - LTR8 LTR ERV1 -404 287 1 783 219 144 46 chrY 12127540 12127887 -12585192 - MER39 LTR ERV1 -2 705 325 362 275 76 15 chrY 12127885 12128016 -12585063 - MER39 LTR ERV1 -568 139 1 * 1928 222 36 11 chrY 12128016 12128158 -12584921 + L1MB3 LINE L1 5642 5779 -404 1905 158 37 8 chrY 12128158 12128512 -12584567 - THE1B LTR MaLR 0 364 1 1928 222 36 11 chrY 12128512 12128897 -12584182 + L1MB3 LINE L1 5779 6182 -1 198 0 0 0 chrY 12128999 12129021 -12584058 + (TC)n Simple_repeat Simple_repeat 2 23 0 25 31 0 0 chrY 12129519 12129551 -12583528 + AT_rich Low_complexity Low_complexity 1 32 0 330 224 35 0 chrY 12129568 12129653 -12583426 + L1MD1 LINE L1 5741 5828 -531 504 184 11 0 chrY 12129679 12129766 -12583313 - AluJ/FLAM SINE Alu -224 88 1 793 262 29 0 chrY 12129766 12130041 -12583038 + L1MD1 LINE L1 5818 6100 -142 1065 175 31 116 chrY 12130050 12130089 -12582990 - MLT1A1 LTR MaLR 0 365 324 1997 162 34 0 chrY 12130089 12130440 -12582639 + THE1B LTR MaLR 2 364 0 1065 175 31 116 chrY 12130440 12130789 -12582290 - MLT1A1 LTR MaLR -41 324 10 441 230 7 15 chrY 12130797 12130932 -12582147 + L1MD1 LINE L1 6106 6239 -3 1583 187 0 11 chrY 12132054 12132338 -12580741 + AluJb SINE Alu 9 289 -23 44 0 0 0 chrY 12132554 12132598 -12580481 + AT_rich Low_complexity Low_complexity 1 44 0 1890 157 3 0 chrY 12132598 12132885 -12580194 - AluSp SINE Alu -24 289 2 271 288 0 0 chrY 12133561 12133641 -12579438 + (TTA)n Simple_repeat Simple_repeat 1 80 0 1268 214 35 14 chrY 12134722 12135011 -12578068 + AluJo SINE Alu 1 295 -17 1407 232 57 19 chrY 12135054 12135472 -12577607 + MER44D DNA MER2_type 2 490 -115 737 204 0 0 chrY 12135473 12135605 -12577474 + FLAM_C SINE Alu 2 133 0 1506 209 7 10 chrY 12135626 12135923 -12577156 + AluJo SINE Alu 1 296 -16 3511 141 102 1 chrY 12135965 12136611 -12576468 + LTR62 LTR ERVK 3 713 -6 240 225 11 22 chrY 12136766 12136855 -12576224 + L1MC5 LINE L1 7630 7717 -244 4653 101 14 3 chrY 12136929 12137585 -12575494 - PABL_B LTR ERV1 -4 663 1 207 204 0 0 chrY 12137679 12137723 -12575356 + (TATG)n Simple_repeat Simple_repeat 1 44 0 1451 221 6 20 chrY 12138623 12138971 -12574108 + MLT1A1 LTR MaLR 11 353 -12 1370 193 8 12 chrY 12139440 12139689 -12573390 + AluJo SINE Alu 35 282 -30 531 82 0 0 chrY 12139689 12139762 -12573317 + (TAGA)n Simple_repeat Simple_repeat 2 74 0 1221 215 21 3 chrY 12139981 12140265 -12572814 + AluJo SINE Alu 11 299 -13 23 0 0 0 chrY 12140356 12140379 -12572700 + AT_rich Low_complexity Low_complexity 1 23 0 1345 139 5 0 chrY 12140876 12141063 -12572016 - AluSg/x SINE Alu -12 300 113 695 117 55 0 chrY 12141370 12141498 -12571581 - L1P LINE L1 -3689 2457 2323 * 7998 147 10 17 chrY 12141496 12143429 -12569650 + L1P3 LINE L1 719 2641 -3820 283 287 0 50 chrY 12144351 12144452 -12568627 + MER61E LTR ERV1 1 96 -473 1259 249 37 96 chrY 12144518 12145062 -12568017 + MER61E LTR ERV1 174 561 -8 180 311 117 29 chrY 12145675 12145778 -12567301 - L2 LINE L2 -7 3306 3195 2641 188 22 79 chrY 12145963 12146696 -12566383 - LTR8 LTR ERV1 0 691 1 2192 191 182 52 chrY 12147245 12147976 -12565103 + LTR1B LTR ERV1 1 826 0 24 0 0 0 chrY 12148190 12148214 -12564865 + AT_rich Low_complexity Low_complexity 1 24 0 218 281 85 0 chrY 12148546 12148628 -12564451 + MIR SINE MIR 161 249 -13 1498 55 0 0 chrY 12149359 12149568 -12563511 + L1PA3 LINE L1 5955 6163 0 246 349 56 41 chrY 12150156 12150351 -12562728 + L2 LINE L2 2479 2676 -638 2037 165 40 3 chrY 12150489 12150840 -12562239 - THE1B LTR MaLR 0 364 1 225 326 65 14 chrY 12150917 12151055 -12562024 - L2 LINE L2 -1025 2289 2145 242 286 71 89 chrY 12151178 12151290 -12561789 - MIR SINE MIR -112 150 41 1788 189 99 25 chrY 12151330 12151775 -12561304 - LTR8A LTR ERV1 -249 478 1 252 377 64 28 chrY 12151787 12152211 -12560868 - L2 LINE L2 -2200 1114 676 1427 188 58 9 chrY 12152247 12152577 -12560502 - MLT1A1 LTR MaLR -6 359 14 1265 192 0 0 chrY 12152620 12152839 -12560240 - AluSg/x SINE Alu -18 292 74 2179 129 0 7 chrY 12153259 12153553 -12559526 + AluY SINE Alu 1 292 -19 3795 176 6 7 chrY 12154281 12154992 -12558087 + MER50 LTR ERV1 1 710 -24 1738 161 16 38 chrY 12155248 12155333 -12557746 + MER47A DNA MER2_type 2 87 -2236 2175 174 32 49 chrY 12155333 12155827 -12557252 - LTR19A LTR ERV1 0 486 1 1738 161 16 38 chrY 12155827 12156113 -12556966 + MER47A DNA MER2_type 87 365 -1 31400 50 12 3 chrY 12157184 12163228 -12549851 - L1PA3 LINE L1 -5 6150 2 1208 202 26 59 chrY 12163807 12164114 -12548965 + AluJo SINE Alu 1 297 -5 1187 207 111 35 chrY 12165395 12165742 -12547337 + LTR54B LTR ERV1 7 395 -103 1852 172 0 0 chrY 12165742 12166033 -12547046 - AluSx SINE Alu -21 291 1 1187 207 111 35 chrY 12166033 12166119 -12546960 + LTR54B LTR ERV1 395 473 -25 1277 199 14 14 chrY 12166678 12166955 -12546124 - MER72 LTR ERV1 0 722 446 1340 129 13 0 chrY 12166956 12167180 -12545899 - MER41A LTR ERV1 -94 460 234 755 221 7 0 chrY 12167202 12167342 -12545737 + FRAM SINE Alu 1 141 -35 180 0 0 0 chrY 12167347 12167367 -12545712 + (CA)n Simple_repeat Simple_repeat 1 20 0 809 282 52 75 chrY 12167380 12167806 -12545273 - MER72 LTR ERV1 -306 416 1 3613 124 9 0 chrY 12167873 12168422 -12544657 - MER41A LTR ERV1 0 554 1 520 220 15 85 chrY 12168544 12168802 -12544277 + MER31B LTR ERV1 3 325 -160 1277 164 67 19 chrY 12168811 12169349 -12543730 + LTR29 LTR ERV1 20 622 0 309 272 11 11 chrY 12169378 12169470 -12543609 + MER67D LTR ERV1 399 490 -24 1914 165 7 0 chrY 12169488 12169773 -12543306 - AluSx SINE Alu -25 287 1 23 33 0 0 chrY 12170046 12170076 -12543003 + AT_rich Low_complexity Low_complexity 1 30 0 1963 187 60 50 chrY 12170084 12170565 -12542514 + LTR19A LTR ERV1 1 486 0 600 141 215 0 chrY 12170565 12170686 -12542393 + LTR19A-int LTR ERV1 1 147 -5439 222 45 68 0 chrY 12170686 12170730 -12542349 + CT-rich Low_complexity Low_complexity 1 47 0 4689 166 87 10 chrY 12170733 12171667 -12541412 + LTR19A-int LTR ERV1 279 1284 -4302 * 23993 101 50 33 chrY 12171664 12175742 -12537337 + LTR19A-int LTR ERV1 1436 5584 -2 1868 179 60 54 chrY 12175744 12176225 -12536854 + LTR19A LTR ERV1 1 484 -2 540 256 51 17 chrY 12176506 12176682 -12536397 - MLT1D LTR MaLR 0 505 324 228 111 0 0 chrY 12176692 12176728 -12536351 + (TG)n Simple_repeat Simple_repeat 2 37 0 1160 64 9 30 chrY 12176885 12177118 -12535961 + (GAAA)n Simple_repeat Simple_repeat 1 228 0 26 50 0 0 chrY 12177479 12177519 -12535560 + AT_rich Low_complexity Low_complexity 1 40 0 2493 138 3 0 chrY 12177600 12177963 -12535116 + THE1B LTR MaLR 1 364 0 497 193 74 57 chrY 12177964 12178140 -12534939 + MLT1D LTR MaLR 1 179 -447 928 263 28 0 chrY 12178173 12178420 -12534659 + MLT1D LTR MaLR 247 500 -5 2413 206 71 40 chrY 12178783 12178923 -12534156 + LTR8A LTR ERV1 1 135 -592 1814 176 0 0 chrY 12178923 12179218 -12533861 - AluSc SINE Alu -12 297 3 2413 206 71 40 chrY 12179218 12179781 -12533298 + LTR8A LTR ERV1 135 726 -1 32 26 0 0 chrY 12180403 12180442 -12532637 + AT_rich Low_complexity Low_complexity 1 39 0 827 206 6 12 chrY 12180442 12180602 -12532477 + AluJb SINE Alu 134 292 -20 1579 219 30 7 chrY 12181392 12181747 -12531332 - MLT1A1 LTR MaLR 0 365 4 1183 203 7 116 chrY 12182228 12182529 -12530550 - AluJo SINE Alu -44 268 1 214 286 23 38 chrY 12182563 12182696 -12530383 + (CATATA)n Simple_repeat Simple_repeat 2 132 0 215 61 30 0 chrY 12183728 12183761 -12529318 + (TA)n Simple_repeat Simple_repeat 2 35 0 3076 102 22 0 chrY 12183773 12184233 -12528846 + L1PA7 LINE L1 5675 6144 -10 188 159 0 23 chrY 12185201 12185245 -12527834 + CT-rich Low_complexity Low_complexity 3 45 0 2206 116 3 0 chrY 12185481 12185791 -12527288 + AluY SINE Alu 1 311 0 1298 143 0 14 chrY 12186307 12186516 -12526563 + AluY SINE Alu 97 302 -9 1131 132 8 97 chrY 12186516 12186553 -12526526 - Tigger2a DNA MER2_type -2472 236 197 1818 139 3 17 chrY 12186553 12186874 -12526205 + AluSc SINE Alu 1 317 0 1131 132 8 97 chrY 12186874 12187091 -12525988 - Tigger2a DNA MER2_type -2511 197 2 246 258 118 43 chrY 12187916 12188102 -12524977 + L1ME2 LINE L1 5879 6078 -86 1081 220 66 120 chrY 12188319 12188851 -12524228 + LTR1B LTR ERV1 311 813 -13 3768 138 17 8 chrY 12189649 12190293 -12522786 + MER4A LTR ERV1 15 664 0 201 74 0 0 chrY 12190481 12190508 -12522571 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1262 204 25 3 chrY 12190886 12191171 -12521908 + MER49 LTR ERV1 1 291 -632 301 215 23 0 chrY 12191211 12191294 -12521785 + LTR39 LTR ERV1 404 637 -266 753 216 6 23 chrY 12191295 12191471 -12521608 + FRAM SINE Alu 1 170 -6 892 237 61 8 chrY 12191471 12191716 -12521363 + MER4D LTR ERV1 636 893 -10 358 403 14 0 chrY 12191803 12191947 -12521132 + MER91A DNA MER1_type 25 170 -26 233 253 20 10 chrY 12192138 12192237 -12520842 + (TATAA)n Simple_repeat Simple_repeat 4 103 0 189 163 65 0 chrY 12192239 12192331 -12520748 + (TA)n Simple_repeat Simple_repeat 1 98 0 343 182 33 61 chrY 12192402 12192638 -12520441 + (TATAA)n Simple_repeat Simple_repeat 1 229 0 1792 160 79 8 chrY 12192639 12193003 -12520076 - Tigger3(Golem) DNA MER2_type -94 2935 2546 3064 160 58 66 chrY 12193003 12193111 -12519968 - LTR8 LTR ERV1 -2 689 582 1596 195 35 35 chrY 12193111 12193486 -12519593 - THE1C LTR MaLR 0 375 1 3064 160 58 66 chrY 12193486 12194071 -12519008 - LTR8 LTR ERV1 -109 582 2 1843 135 24 55 chrY 12194073 12194177 -12518902 - Tigger3(Golem) DNA MER2_type -479 2550 2444 2586 42 0 13 chrY 12194177 12194488 -12518591 + AluY SINE Alu 1 307 -4 1843 135 24 55 chrY 12194488 12194805 -12518274 - Tigger3(Golem) DNA MER2_type -585 2444 2142 714 182 0 88 chrY 12194822 12194992 -12518087 - Tigger3(Golem) DNA MER2_type -2871 158 4 1787 187 78 9 chrY 12195980 12196328 -12516751 + MER83C LTR ERV1 1 372 -1 578 147 95 35 chrY 12196432 12196548 -12516531 + AluJb SINE Alu 10 132 -180 1889 135 20 20 chrY 12196701 12196997 -12516082 + AluSp SINE Alu 1 296 -17 714 246 27 0 chrY 12197098 12197281 -12515798 + MER2 DNA MER2_type 1 188 -157 21 0 0 0 chrY 12197336 12197357 -12515722 + AT_rich Low_complexity Low_complexity 1 21 0 977 124 7 7 chrY 12197651 12197788 -12515291 - AluSq/x SINE Alu -175 138 2 1302 223 17 30 chrY 12197983 12198279 -12514800 - AluJo SINE Alu -20 292 1 1805 208 76 2 chrY 12198486 12198895 -12514184 + Tigger2 DNA MER2_type 2280 2718 0 195 361 21 56 chrY 12198913 12199057 -12514022 + L2 LINE L2 3134 3272 0 32 57 0 0 chrY 12199081 12199134 -12513945 + AT_rich Low_complexity Low_complexity 1 53 0 624 299 84 46 chrY 12199357 12200398 -12512681 + L1MEc LINE L1 691 1771 -4625 1752 191 10 0 chrY 12200576 12200885 -12512194 + AluJb SINE Alu 1 312 0 2360 67 0 7 chrY 12200903 12201201 -12511878 - AluY SINE Alu -15 296 1 677 289 58 31 chrY 12201225 12201519 -12511560 - MLT1A2 LTR MaLR -64 310 9 816 208 57 47 chrY 12201590 12201723 -12511356 + AluJb SINE Alu 1 138 -174 257 68 23 0 chrY 12201723 12201767 -12511312 + (TAAA)n Simple_repeat Simple_repeat 3 47 0 816 208 57 47 chrY 12201767 12201845 -12511234 + AluJb SINE Alu 138 214 -98 1119 221 149 75 chrY 12202429 12203032 -12510047 + LTR1B LTR ERV1 1 648 -178 1644 162 16 0 chrY 12203247 12203550 -12509529 - L1P LINE L1 -2551 3595 3288 302 266 105 27 chrY 12203869 12204125 -12508954 + MLT1C LTR MaLR 94 386 -119 1083 190 0 0 chrY 12204155 12204334 -12508745 - AluSx SINE Alu -133 179 1 237 197 33 33 chrY 12204336 12204397 -12508682 + MLT1C LTR MaLR 401 461 -6 222 235 0 74 chrY 12204403 12204452 -12508627 + (CATATA)n Simple_repeat Simple_repeat 4 46 -32 2431 202 50 22 chrY 12204452 12205037 -12508042 + MER7C DNA MER2_type 1 601 -1 222 235 0 74 chrY 12205037 12205068 -12508011 + (CATATA)n Simple_repeat Simple_repeat 46 78 0 366 214 0 0 chrY 12205488 12205572 -12507507 + (TATATG)n Simple_repeat Simple_repeat 1 84 0 267 217 58 8 chrY 12205608 12205728 -12507351 + (TA)n Simple_repeat Simple_repeat 2 127 0 24 77 0 0 chrY 12205770 12205822 -12507257 + AT_rich Low_complexity Low_complexity 1 52 0 196 170 32 21 chrY 12205828 12205922 -12507157 + (TA)n Simple_repeat Simple_repeat 1 95 0 351 189 63 13 chrY 12205935 12206094 -12506985 + (TA)n Simple_repeat Simple_repeat 1 167 0 371 121 0 0 chrY 12206095 12206153 -12506926 - Tigger3(Golem) DNA MER2_type -56 2973 2916 4363 131 23 3 chrY 12206328 12207036 -12506043 - LTR30 LTR ERV1 0 722 1 8884 70 12 2 chrY 12207036 12208219 -12504860 - HERV30 LTR ERV1 0 8257 7064 31065 76 9 1 chrY 12208221 12214895 -12498184 - HERV30 LTR ERV1 -1462 6795 1 2845 128 14 5 chrY 12214895 12215520 -12497559 - LTR30 LTR ERV1 0 722 6 402 293 90 38 chrY 12216377 12216589 -12496490 + L1M4 LINE L1 2487 2709 -3437 492 143 20 20 chrY 12216594 12216692 -12496387 + MER4A LTR ERV1 1 98 -566 800 218 21 11 chrY 12216692 12216935 -12496144 + MER4A LTR ERV1 261 564 -100 1031 179 44 125 chrY 12216937 12217418 -12495661 - LTR7 LTR ERV1 -7 443 2 2161 172 0 73 chrY 12217693 12218157 -12494922 - Tigger2a DNA MER2_type -3 431 2 303 308 206 51 chrY 12218172 12218639 -12494440 - L2 LINE L2 -1041 2273 1735 1414 203 66 20 chrY 12218667 12218949 -12494130 - MLT1A1 LTR MaLR 0 365 63 1807 158 96 9 chrY 12218949 12219284 -12493795 + THE1B LTR MaLR 1 364 0 1414 203 66 20 chrY 12219284 12219350 -12493729 - MLT1A1 LTR MaLR -302 63 1 847 338 148 47 chrY 12219442 12220225 -12492854 - L2 LINE L2 -1716 1598 667 1626 202 3 7 chrY 12220225 12220527 -12492552 + AluJo SINE Alu 1 301 -11 847 338 148 47 chrY 12220527 12220863 -12492216 - L2 LINE L2 -2647 667 366 192 320 115 26 chrY 12220893 12221049 -12492030 - L2 LINE L2 -3035 279 110 7582 28 0 3 chrY 12221252 12222414 -12490665 + L1PA3 LINE L1 5006 6152 -3 4104 98 17 3 chrY 12223207 12223790 -12489289 + LTR10C LTR ERV1 1 591 0 655 295 23 20 chrY 12224025 12224374 -12488705 + L1MA9 LINE L1 5933 6282 -30 222 253 46 11 chrY 12224389 12224476 -12488603 + (CATATA)n Simple_repeat Simple_repeat 2 91 0 1666 190 3 0 chrY 12225396 12225680 -12487399 - AluSx SINE Alu -27 285 1 1212 222 41 10 chrY 12226477 12226770 -12486309 - AluJo SINE Alu -6 306 5 226 301 30 30 chrY 12226890 12227023 -12486056 + (CATATA)n Simple_repeat Simple_repeat 2 134 0 363 96 0 0 chrY 12227225 12227277 -12485802 + (CA)n Simple_repeat Simple_repeat 1 52 0 287 224 2 2 chrY 12227330 12227403 -12485676 - MLT1D LTR MaLR -330 175 111 400 281 29 7 chrY 12227492 12227631 -12485448 - MIR SINE MIR 0 262 121 341 75 19 0 chrY 12228089 12228142 -12484937 + (TA)n Simple_repeat Simple_repeat 2 55 0 1494 230 3 19 chrY 12228483 12228800 -12484279 - AluJo SINE Alu 0 312 1 214 93 23 23 chrY 12230135 12230178 -12482901 + (TA)n Simple_repeat Simple_repeat 1 43 0 1154 235 35 105 chrY 12230313 12230828 -12482251 - LTR8 LTR ERV1 0 691 213 25 0 0 0 chrY 12230831 12230856 -12482223 + AT_rich Low_complexity Low_complexity 1 25 0 48 60 0 0 chrY 12231016 12231099 -12481980 + AT_rich Low_complexity Low_complexity 1 83 0 1085 228 38 10 chrY 12231150 12231439 -12481640 - LTR24B LTR ERV1 -7 569 273 227 221 39 13 chrY 12231525 12231602 -12481477 + (TA)n Simple_repeat Simple_repeat 2 80 0 1314 192 50 4 chrY 12231756 12232037 -12481042 - LTR24B LTR ERV1 -282 294 1 * 1457 168 36 123 chrY 12232037 12232148 -12480931 + LTR49 LTR ERV1 30 149 -446 1813 178 3 0 chrY 12232148 12232434 -12480645 + AluSx SINE Alu 1 287 -25 1457 168 36 123 chrY 12232434 12232767 -12480312 + LTR49 LTR ERV1 149 435 -160 2259 201 38 59 chrY 12232844 12232971 -12480108 + LTR8A LTR ERV1 34 162 -565 1308 204 0 83 chrY 12232971 12233309 -12479770 - AluJb SINE Alu -2 310 1 2259 201 38 59 chrY 12233309 12233888 -12479191 + LTR8A LTR ERV1 162 725 -2 441 149 14 0 chrY 12233901 12233975 -12479104 + LTR49 LTR ERV1 518 592 -3 574 246 6 47 chrY 12234056 12234227 -12478852 + MLT1A2 LTR MaLR 1 164 -210 3733 151 25 22 chrY 12234260 12234304 -12478775 + LTR8 LTR ERV1 1 43 -648 4785 160 4 8 chrY 12234304 12235085 -12477994 - LTR17 LTR ERV1 0 780 3 3733 151 25 22 chrY 12235085 12235729 -12477350 + LTR8 LTR ERV1 43 691 0 359 250 129 29 chrY 12235729 12235869 -12477210 + MLT1A2 LTR MaLR 190 343 -31 773 267 79 38 chrY 12236004 12236382 -12476697 - LTR24B LTR ERV1 -7 569 165 1490 137 43 39 chrY 12236382 12236638 -12476441 + AluY SINE Alu 1 257 -54 773 267 79 38 chrY 12236638 12236739 -12476340 - LTR24B LTR ERV1 -411 165 70 2545 178 10 21 chrY 12236878 12237362 -12475717 - MER61E LTR ERV1 -90 479 1 1259 235 56 34 chrY 12237597 12237954 -12475125 - MLT1A1 LTR MaLR 0 365 1 1442 218 42 3 chrY 12238416 12238701 -12474378 - AluJb SINE Alu -16 296 1 3927 101 24 4 chrY 12239922 12240475 -12472604 + LTR6A LTR ERV1 1 564 0 20643 212 25 6 chrY 12240477 12246574 -12466505 + HERVS71 LTR ERV1 4 7850 -1128 457 139 0 0 chrY 12246574 12246646 -12466433 + LTR6A LTR ERV1 493 564 0 1964 145 6 10 chrY 12246851 12247162 -12465917 + AluSx SINE Alu 1 310 -2 290 274 147 71 chrY 12247181 12247433 -12465646 - MER92B LTR ERV1 -8 628 358 1263 225 0 18 chrY 12247535 12247811 -12465268 + LTR39 LTR ERV1 265 535 -248 1886 111 33 45 chrY 12247811 12248168 -12464911 + LTR10D LTR ERV1 1 353 -160 1594 142 92 12 chrY 12248168 12248537 -12464542 - LTR7 LTR ERV1 0 450 1 1152 104 0 0 chrY 12248537 12248697 -12464382 + LTR10D LTR ERV1 349 508 -5 1297 177 8 16 chrY 12248702 12248956 -12464123 + LTR39 LTR ERV1 532 783 0 22 0 0 0 chrY 12249292 12249314 -12463765 + AT_rich Low_complexity Low_complexity 1 22 0 4551 107 48 0 chrY 12250071 12250760 -12462319 - LTR30 LTR ERV1 0 722 1 233 106 47 35 chrY 12251155 12251240 -12461839 + (TAGA)n Simple_repeat Simple_repeat 1 86 0 229 178 44 33 chrY 12251478 12251568 -12461511 + (TAGA)n Simple_repeat Simple_repeat 4 94 0 1872 134 3 72 chrY 12251870 12252205 -12460874 - AluSx SINE Alu 0 312 1 36 53 0 0 chrY 12253088 12253145 -12459934 + AT_rich Low_complexity Low_complexity 1 57 0 1071 234 51 4 chrY 12253669 12253904 -12459175 - AluJb SINE Alu -61 251 6 188 119 0 24 chrY 12254013 12254055 -12459024 + (TAGA)n Simple_repeat Simple_repeat 4 44 0 224 215 54 27 chrY 12254074 12254223 -12458856 + (TAGA)n Simple_repeat Simple_repeat 2 154 0 21 0 0 0 chrY 12254857 12254878 -12458201 + AT_rich Low_complexity Low_complexity 1 21 0 364 315 170 33 chrY 12254907 12255390 -12457689 + L1ME3 LINE L1 3890 4438 -1708 319 261 15 8 chrY 12255393 12255523 -12457556 + L1ME3 LINE L1 4534 4664 -1482 29 47 0 0 chrY 12255747 12255790 -12457289 + AT_rich Low_complexity Low_complexity 1 43 0 2829 124 24 32 chrY 12255897 12256390 -12456689 - LTR15 LTR ERV1 -4 489 1 1625 198 10 10 chrY 12256420 12256728 -12456351 + AluSq SINE Alu 1 308 -5 270 317 27 22 chrY 12257503 12257727 -12455352 + L1ME3 LINE L1 5725 5949 -213 2850 241 46 32 chrY 12257881 12258816 -12454263 + MER45B DNA AcHobo 13 960 -80 861 282 0 0 chrY 12258826 12259032 -12454047 - MER58A DNA MER1_type -6 218 13 234 0 0 0 chrY 12259383 12259409 -12453670 + (A)n Simple_repeat Simple_repeat 1 26 0 228 264 23 0 chrY 12260256 12260343 -12452736 + (TA)n Simple_repeat Simple_repeat 1 89 0 28609 51 5 3 chrY 12260352 12266489 -12446590 - L1PA4 LINE L1 -3 6152 1 1278 241 0 17 chrY 12266554 12266869 -12446210 + AluJb SINE Alu 5 314 0 23 0 0 0 chrY 12266905 12266928 -12446151 + AT_rich Low_complexity Low_complexity 1 23 0 353 255 13 40 chrY 12266928 12266954 -12446125 + (TA)n Simple_repeat Simple_repeat 2 27 -119 1398 186 71 23 chrY 12266954 12267308 -12445771 - THE1C LTR MaLR 0 375 5 353 255 13 40 chrY 12267308 12267430 -12445649 + (TA)n Simple_repeat Simple_repeat 27 146 0 1258 234 9 2 chrY 12267430 12267790 -12445289 + MER47B DNA MER2_type 1 418 0 321 47 0 0 chrY 12267800 12267843 -12445236 + (TG)n Simple_repeat Simple_repeat 2 44 0 359 256 22 33 chrY 12267843 12267976 -12445103 + (TA)n Simple_repeat Simple_repeat 2 134 -45 2061 185 11 42 chrY 12267976 12268424 -12444655 - Tigger2a DNA MER2_type 0 434 1 359 256 22 33 chrY 12268424 12268470 -12444609 + (TA)n Simple_repeat Simple_repeat 134 179 0 237 108 0 0 chrY 12268926 12268963 -12444116 + (TG)n Simple_repeat Simple_repeat 2 38 0 27 73 0 0 chrY 12269147 12269202 -12443877 + AT_rich Low_complexity Low_complexity 1 55 0 391 268 22 17 chrY 12269280 12269459 -12443620 + (TA)n Simple_repeat Simple_repeat 1 180 0 197 132 26 0 chrY 12269535 12269573 -12443506 + (CA)n Simple_repeat Simple_repeat 2 40 0 253 285 177 16 chrY 12270086 12270272 -12442807 - MIR SINE MIR -19 243 28 210 37 0 0 chrY 12270579 12270606 -12442473 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 297 51 0 0 chrY 12271081 12271120 -12441959 + (CA)n Simple_repeat Simple_repeat 2 40 0 30 0 0 0 chrY 12271140 12271170 -12441909 + AT_rich Low_complexity Low_complexity 1 30 0 1452 183 39 32 chrY 12271170 12271455 -12441624 - AluSq SINE Alu -26 287 1 234 118 68 25 chrY 12271580 12271741 -12441338 + (TA)n Simple_repeat Simple_repeat 2 169 0 31 44 0 0 chrY 12271794 12271839 -12441240 + AT_rich Low_complexity Low_complexity 1 45 0 390 203 39 0 chrY 12271939 12272067 -12441012 + (TA)n Simple_repeat Simple_repeat 2 134 0 1146 213 144 18 chrY 12272246 12272627 -12440452 - MSTB1 LTR MaLR 0 432 4 1188 174 28 71 chrY 12272975 12273309 -12439770 - AluJo SINE Alu 0 336 15 21 0 0 0 chrY 12273779 12273800 -12439279 + AT_rich Low_complexity Low_complexity 1 21 0 1238 266 3 24 chrY 12273883 12274180 -12438899 - AluJb SINE Alu -21 291 1 225 0 0 0 chrY 12274208 12274233 -12438846 + (T)n Simple_repeat Simple_repeat 1 25 0 26 0 0 0 chrY 12274941 12274967 -12438112 + AT_rich Low_complexity Low_complexity 1 26 0 1048 256 67 11 chrY 12274967 12275135 -12437944 - AluJb SINE Alu -1 301 109 243 0 0 0 chrY 12275135 12275162 -12437917 + (TG)n Simple_repeat Simple_repeat 2 28 0 1048 256 67 11 chrY 12275162 12275278 -12437801 - AluJb SINE Alu -193 109 1 189 200 60 0 chrY 12275312 12275362 -12437717 + MIR SINE MIR 210 262 0 806 132 38 38 chrY 12276271 12276430 -12436649 - THE1C LTR MaLR 0 375 217 742 139 0 0 chrY 12276437 12276545 -12436534 + AluSg/x SINE Alu 177 284 -26 354 23 0 0 chrY 12276545 12276588 -12436491 + (CATA)n Simple_repeat Simple_repeat 2 44 0 965 134 17 12 chrY 12276609 12276781 -12436298 - THE1C LTR MaLR -202 173 1 408 111 0 0 chrY 12277079 12277142 -12435937 + (TG)n Simple_repeat Simple_repeat 2 64 0 280 214 0 14 chrY 12278014 12278084 -12434995 - LTR40b LTR ERVL -326 136 68 1653 216 0 7 chrY 12278105 12278410 -12434669 - AluJb SINE Alu -4 308 6 722 258 205 7 chrY 12279253 12279536 -12433543 + MLT1A2 LTR MaLR 1 339 -35 1006 251 35 35 chrY 12279684 12279999 -12433080 + MER77 LTR ERV1 274 588 -17 5782 101 40 0 chrY 12280372 12281634 -12431445 + L1PA7 LINE L1 4856 6153 -1 682 245 5 27 chrY 12281712 12281896 -12431183 - FRAM SINE Alu 0 176 1 1628 164 79 15 chrY 12282838 12283179 -12429900 - MLT1B LTR MaLR -4 386 24 1702 157 49 14 chrY 12283349 12283635 -12429444 + AluSx SINE Alu 1 296 -16 249 143 66 77 chrY 12283646 12283737 -12429342 - L1MC4 LINE L1 -1339 6703 6614 * 254 210 86 0 chrY 12283657 12283738 -12429341 + L1MC4 LINE L1 6615 6702 -1340 301 235 123 0 chrY 12283738 12283819 -12429260 + L1MC4 LINE L1 6613 6703 -1339 1174 199 61 91 chrY 12283977 12284274 -12428805 + AluSx SINE Alu 1 288 -14 1525 199 3 7 chrY 12284401 12284688 -12428391 + AluJo SINE Alu 1 286 -26 1416 60 0 34 chrY 12284740 12285036 -12428043 + (GAAA)n Simple_repeat Simple_repeat 4 287 0 512 246 0 0 chrY 12285460 12285582 -12427497 + FRAM SINE Alu 47 168 -8 26 50 0 0 chrY 12286381 12286421 -12426658 + AT_rich Low_complexity Low_complexity 1 40 0 595 136 8 25 chrY 12286446 12286564 -12426515 + L1PA16 LINE L1 6048 6163 -3 300 288 91 41 chrY 12289021 12289341 -12423738 - L1ME3A LINE L1 -250 5920 5585 1458 222 7 0 chrY 12289351 12289648 -12423431 - AluJo SINE Alu -13 299 1 207 0 0 0 chrY 12289703 12289726 -12423353 + (TTTTG)n Simple_repeat Simple_repeat 4 26 0 597 160 43 0 chrY 12289925 12290043 -12423036 - FLAM_A SINE Alu 0 139 18 1800 154 13 35 chrY 12290430 12290790 -12422289 + AluSx SINE Alu 1 312 0 378 322 159 21 chrY 12290886 12291175 -12421904 + MLT1E LTR MaLR 252 580 -13 652 178 0 0 chrY 12291420 12291527 -12421552 + U6 snRNA snRNA 1 107 0 14873 143 16 11 chrY 12291527 12294872 -12418207 + L1PA8A LINE L1 2561 5917 -214 2213 63 7 17 chrY 12294872 12295201 -12417878 - AluY SINE Alu 0 311 1 14873 143 16 11 chrY 12295201 12295311 -12417768 + L1PA8A LINE L1 5917 6025 -106 887 173 50 25 chrY 12295314 12295516 -12417563 - MLT1B LTR MaLR -161 229 23 1383 183 57 11 chrY 12295689 12295951 -12417128 + AluSx SINE Alu 1 274 -38 355 231 22 0 chrY 12295965 12296056 -12417023 + LTR22 LTR ERVK 315 407 -173 220 167 0 33 chrY 12296079 12296139 -12416940 + (TATG)n Simple_repeat Simple_repeat 3 60 0 396 59 0 0 chrY 12296141 12296192 -12416887 + (TG)n Simple_repeat Simple_repeat 2 52 0 1603 192 3 7 chrY 12296304 12296591 -12416488 + AluJo SINE Alu 1 286 -26 324 143 0 0 chrY 12296594 12296650 -12416429 + (GGGGA)n Simple_repeat Simple_repeat 5 60 0 745 121 24 30 chrY 12296655 12296821 -12416258 + GA-rich Low_complexity Low_complexity 1 165 0 533 267 87 5 chrY 12297053 12297248 -12415831 + MER20 DNA MER1_type 4 214 -5 2975 189 19 2 chrY 12298024 12298594 -12414485 + LTR22 LTR ERVK 1 580 0 192 217 0 0 chrY 12298727 12298773 -12414306 + (TATG)n Simple_repeat Simple_repeat 2 47 0 21 36 0 0 chrY 12298773 12298801 -12414278 + AT_rich Low_complexity Low_complexity 1 28 0 180 98 20 39 chrY 12299074 12299125 -12413954 + (TA)n Simple_repeat Simple_repeat 1 50 0 315 0 0 0 chrY 12299240 12299275 -12413804 + (TG)n Simple_repeat Simple_repeat 2 36 0 1377 206 0 3 chrY 12299683 12299965 -12413114 - Tigger4(Zombi) DNA MER2_type 0 2731 2451 953 169 5 42 chrY 12299973 12300127 -12412952 + MER1B DNA MER1_type 158 305 -2407 2859 0 0 0 chrY 12300127 12300433 -12412646 + AluYa5 SINE Alu 1 306 -5 953 169 5 42 chrY 12300433 12300467 -12412612 + MER1B DNA MER1_type 305 339 0 626 144 8 16 chrY 12300467 12300586 -12412493 - Tigger4(Zombi) DNA MER2_type -335 2396 2279 1995 135 57 9 chrY 12300587 12301043 -12412036 - LTR19B LTR ERV1 0 580 1 564 186 93 8 chrY 12301043 12301172 -12411907 - Tigger4(Zombi) DNA MER2_type -449 2282 2143 1165 167 127 4 chrY 12301174 12301450 -12411629 - Tigger4(Zombi) DNA MER2_type -2156 575 266 1019 156 330 5 chrY 12301458 12301622 -12411457 - AluSc SINE Alu 0 299 190 1479 98 0 0 chrY 12301622 12301816 -12411263 - AluY SINE Alu -22 289 96 1019 156 330 5 chrY 12301816 12301875 -12411204 - AluSc SINE Alu -109 190 3 898 168 0 0 chrY 12301876 12302019 -12411060 - AluSq/x SINE Alu -167 146 4 1133 215 0 54 chrY 12302026 12302305 -12410774 - Tigger4(Zombi) DNA MER2_type -2459 272 9 1991 121 321 92 chrY 12302627 12303470 -12409609 - LTR12 LTR ERV1 0 2032 52 3925 124 17 8 chrY 12303478 12304115 -12408964 - HERV9 LTR ERV1 0 8399 7757 1858 189 115 61 chrY 12304110 12304946 -12408133 - Harlequin LTR ERV1 -5176 1720 840 * 5684 102 14 8 chrY 12304947 12305807 -12407272 - Harlequin LTR ERV1 -3455 4944 4080 19411 124 15 9 chrY 12305814 12308932 -12404147 - Harlequin LTR ERV1 -5260 3139 1 1692 125 209 179 chrY 12308932 12309494 -12403585 - LTR12 LTR ERV1 -135 579 1 252 0 0 0 chrY 12309565 12309593 -12403486 + (T)n Simple_repeat Simple_repeat 1 28 0 1231 173 37 8 chrY 12311716 12311956 -12401123 - MER50 LTR ERV1 -2 732 486 1658 134 36 46 chrY 12311956 12312034 -12401045 + THE1B LTR MaLR 1 78 -286 6611 126 22 2 chrY 12312034 12313019 -12400060 + LTR13 LTR ERVK 1 1005 -2 1658 134 36 46 chrY 12313019 12313247 -12399832 + THE1B LTR MaLR 78 304 -60 591 178 0 8 chrY 12313263 12313392 -12399687 - L1P LINE L1 -4021 2125 1998 734 200 8 0 chrY 12313403 12313533 -12399546 - AluSq/x SINE Alu -182 131 2 1218 197 39 58 chrY 12313552 12313862 -12399217 - L1P LINE L1 -1980 4166 3863 220 344 102 62 chrY 12313902 12314421 -12398658 + L2 LINE L2 1300 1838 -1476 1761 177 10 7 chrY 12314815 12315115 -12397964 + AluSx SINE Alu 1 301 -11 21583 143 18 24 chrY 12315791 12316258 -12396821 + HERV9 LTR ERV1 4766 5234 -3165 186 273 26 52 chrY 12316258 12316335 -12396744 - L3 LINE CR1 -42 1535 1461 21583 143 18 24 chrY 12316335 12319444 -12393635 + HERV9 LTR ERV1 5234 8399 0 1142 196 86 68 chrY 12319444 12319724 -12393355 + LTR12 LTR ERV1 1 285 -429 276 214 0 14 chrY 12319728 12319798 -12393281 + LTR30 LTR ERV1 556 624 -98 666 210 25 0 chrY 12319798 12319917 -12393162 + LTR12 LTR ERV1 359 480 -234 1309 189 0 0 chrY 12319918 12320130 -12392949 + AluY SINE Alu 71 282 -29 1944 114 0 53 chrY 12320563 12320888 -12392191 + AluY SINE Alu 1 309 0 2304 160 52 64 chrY 12421285 12421829 -12291250 + HUERS-P3b LTR ERV1 3258 3794 -3624 1013 182 62 8 chrY 12421825 12422067 -12291012 + HUERS-P3b LTR ERV1 3936 4190 -3228 * 302 222 14 0 chrY 12422951 12423023 -12290056 - HUERS-P3b LTR ERV1 -2047 5371 5299 2260 138 6 16 chrY 12423256 12423787 -12289292 - MER11A LTR ERVK -290 976 314 238 273 91 57 chrY 12424252 12424516 -12288563 - MER46C DNA MER2_type -39 299 27 2631 201 50 12 chrY 12424769 12425365 -12287714 + HUERS-P3b LTR ERV1 2 620 -7099 430 291 84 15 chrY 12425679 12425882 -12287197 - L1MB5 LINE L1 -9 6165 5949 214 186 0 0 chrY 12425962 12426005 -12287074 + T-rich Low_complexity Low_complexity 2 44 0 1269 213 17 0 chrY 12426464 12426703 -12286376 - AluSx SINE Alu -69 243 1 234 331 12 30 chrY 12426894 12427060 -12286019 + L2 LINE L2 1910 2072 -1242 225 309 0 0 chrY 12427115 12427170 -12285909 + polypyrimidine Low_complexity Low_complexity 4 58 0 3047 196 3 18 chrY 12427413 12428329 -12284750 + L1P3 LINE L1 1126 2031 -4430 2585 174 14 17 chrY 12428488 12429068 -12284011 - L1P LINE L1 -2477 3669 3092 1203 243 25 54 chrY 12429241 12429770 -12283309 - HERV3 LTR ERV1 -2216 6210 5641 555 261 32 43 chrY 12430047 12430235 -12282844 + HUERS-P3b LTR ERV1 321 506 -6912 2794 175 16 21 chrY 12430646 12431218 -12281861 - LTR9B LTR ERV1 0 644 76 212 220 20 0 chrY 12431343 12431393 -12281686 + (TA)n Simple_repeat Simple_repeat 1 51 0 1490 245 52 54 chrY 12431621 12432218 -12280861 - L1PA16 LINE L1 -48 6118 5523 2913 96 0 40 chrY 12433306 12433756 -12279323 + LTR14C LTR ERVK 1 432 -155 2042 190 53 26 chrY 12534873 12535367 -12177712 + MLT2B3 LTR ERVL 1 507 -47 228 186 45 28 chrY 12535422 12535599 -12177480 + GA-rich Low_complexity Low_complexity 1 180 0 276 234 32 11 chrY 12535613 12535707 -12177372 + GA-rich Low_complexity Low_complexity 1 96 0 297 0 0 0 chrY 12535876 12535909 -12177170 + (TG)n Simple_repeat Simple_repeat 2 34 0 254 135 0 0 chrY 12536479 12536516 -12176563 - AluSc SINE Alu -47 252 216 183 80 0 0 chrY 12536520 12536545 -12176534 + (A)n Simple_repeat Simple_repeat 1 25 0 24 0 0 0 chrY 12536693 12536717 -12176362 + AT_rich Low_complexity Low_complexity 1 24 0 1941 144 10 0 chrY 12537654 12537952 -12175127 + AluY SINE Alu 1 301 -10 2414 103 167 137 chrY 12538562 12539267 -12173812 + LTR12 LTR ERV1 57 714 0 28 0 0 0 chrY 12539854 12539882 -12173197 + AT_rich Low_complexity Low_complexity 1 28 0 1440 191 3 84 chrY 12539919 12540254 -12172825 + AluJb SINE Alu 1 308 -4 341 273 77 16 chrY 12540429 12540612 -12172467 + MER3 DNA MER1_type 7 200 -9 578 275 65 13 chrY 12540624 12540933 -12172146 + L1M4 LINE L1 2162 2486 -3660 1441 218 7 0 chrY 12541393 12541682 -12171397 - AluSx SINE Alu -11 291 1 372 227 0 0 chrY 12542008 12542083 -12170996 - LTR8A LTR ERV1 0 727 653 1136 205 133 42 chrY 12542089 12542352 -12170727 + AluSx SINE Alu 10 296 -16 2001 181 95 65 chrY 12542383 12543002 -12170077 - LTR8A LTR ERV1 -89 638 1 1590 238 116 42 chrY 12543095 12543527 -12169552 + MER50 LTR ERV1 10 511 -223 1890 166 30 38 chrY 12543527 12543894 -12169185 - THE1B LTR MaLR 0 364 1 1590 238 116 42 chrY 12543894 12544134 -12168945 + MER50 LTR ERV1 511 732 -2 252 0 0 0 chrY 12546257 12546285 -12166794 + (A)n Simple_repeat Simple_repeat 1 28 0 1692 125 209 179 chrY 12546356 12546918 -12166161 + LTR12 LTR ERV1 1 579 -135 19411 124 15 9 chrY 12546918 12550036 -12163043 + HERV9 LTR ERV1 1 3139 -5260 5710 102 13 8 chrY 12550043 12550904 -12162175 + HERV9 LTR ERV1 4080 4944 -3455 1858 189 115 61 chrY 12550905 12551741 -12161338 + Harlequin LTR ERV1 840 1720 -5176 * 3925 124 17 8 chrY 12551736 12552373 -12160706 + Harlequin LTR ERV1 7757 8399 0 1991 121 321 92 chrY 12552381 12553224 -12159855 + LTR12 LTR ERV1 52 714 0 1133 215 0 54 chrY 12553546 12553825 -12159254 + Tigger4(Zombi) DNA MER2_type 9 272 -2459 898 168 0 0 chrY 12553832 12553975 -12159104 + AluSq/x SINE Alu 4 146 -167 1019 156 330 5 chrY 12553976 12554035 -12159044 + AluSc SINE Alu 3 42 -257 1479 98 0 0 chrY 12554035 12554229 -12158850 + AluY SINE Alu 96 289 -22 1019 156 330 5 chrY 12554229 12554393 -12158686 + AluSc SINE Alu 42 299 0 1165 167 127 4 chrY 12554401 12554677 -12158402 + Tigger4(Zombi) DNA MER2_type 266 575 -2156 564 186 93 8 chrY 12554679 12554808 -12158271 + Tigger4(Zombi) DNA MER2_type 2143 2282 -449 1995 135 57 9 chrY 12554808 12555264 -12157815 + LTR19B LTR ERV1 1 580 0 626 144 8 16 chrY 12555265 12555390 -12157689 + Tigger4(Zombi) DNA MER2_type 2279 2402 -329 * 953 169 5 42 chrY 12555384 12555418 -12157661 - MER1B DNA MER1_type -2373 339 305 2859 0 0 0 chrY 12555418 12555724 -12157355 - AluYa5 SINE Alu -5 306 1 953 169 5 42 chrY 12555724 12555878 -12157201 - MER1B DNA MER1_type -2407 305 158 1377 206 0 3 chrY 12555886 12556168 -12156911 + Tigger4(Zombi) DNA MER2_type 2451 2731 0 315 0 0 0 chrY 12556576 12556611 -12156468 + (CA)n Simple_repeat Simple_repeat 2 36 0 180 98 20 39 chrY 12556726 12556777 -12156302 + (TA)n Simple_repeat Simple_repeat 1 50 0 21 36 0 0 chrY 12557050 12557078 -12156001 + AT_rich Low_complexity Low_complexity 1 28 0 192 217 0 0 chrY 12557078 12557124 -12155955 + (CATA)n Simple_repeat Simple_repeat 2 47 0 2975 189 19 2 chrY 12557257 12557827 -12155252 - LTR22 LTR ERVK 0 580 1 533 267 87 5 chrY 12558603 12558798 -12154281 - MER20 DNA MER1_type -5 214 4 709 123 25 31 chrY 12559030 12559192 -12153887 + CT-rich Low_complexity Low_complexity 1 161 0 324 143 0 0 chrY 12559197 12559253 -12153826 + (TCCCC)n Simple_repeat Simple_repeat 5 60 0 1603 192 3 7 chrY 12559256 12559543 -12153536 - AluJo SINE Alu -26 286 1 432 55 0 0 chrY 12559655 12559710 -12153369 + (CA)n Simple_repeat Simple_repeat 2 56 0 220 167 0 33 chrY 12559712 12559772 -12153307 + (CATA)n Simple_repeat Simple_repeat 3 60 0 355 231 22 0 chrY 12559795 12559886 -12153193 - LTR22 LTR ERVK -173 407 315 1383 183 57 11 chrY 12559900 12560162 -12152917 - AluSx SINE Alu -38 274 1 887 173 50 25 chrY 12560335 12560537 -12152542 + MLT1B LTR MaLR 23 229 -161 14849 144 16 12 chrY 12560540 12560650 -12152429 - L1PA8A LINE L1 -106 6025 5917 2213 63 7 17 chrY 12560650 12560979 -12152100 + AluY SINE Alu 1 311 0 14849 144 16 12 chrY 12560979 12564325 -12148754 - L1PA8A LINE L1 -214 5917 2561 652 178 0 0 chrY 12564325 12564432 -12148647 - U6 snRNA snRNA 0 107 1 378 322 159 21 chrY 12564677 12564966 -12148113 - MLT1E LTR MaLR -13 580 252 1800 154 13 35 chrY 12565062 12565422 -12147657 - AluSx SINE Alu 0 312 1 598 160 43 0 chrY 12565809 12565927 -12147152 + FLAM_A SINE Alu 18 139 0 207 0 0 0 chrY 12566126 12566149 -12146930 + (CAAAA)n Simple_repeat Simple_repeat 4 26 0 1458 222 7 0 chrY 12566204 12566501 -12146578 + AluJo SINE Alu 1 299 -13 300 288 91 41 chrY 12566511 12566831 -12146248 + L1ME3A LINE L1 5585 5920 -250 595 136 8 25 chrY 12569288 12569406 -12143673 - L1PA16 LINE L1 -3 6163 6048 26 50 0 0 chrY 12569431 12569471 -12143608 + AT_rich Low_complexity Low_complexity 1 40 0 509 246 0 0 chrY 12570270 12570392 -12142687 - FRAM SINE Alu -8 168 47 254 286 162 9 chrY 12570490 12570595 -12142484 - MER20 DNA MER1_type -95 124 4 1367 42 6 32 chrY 12570816 12571127 -12141952 + (TTTC)n Simple_repeat Simple_repeat 1 480 0 1507 199 3 7 chrY 12571179 12571466 -12141613 - AluJo SINE Alu -26 286 1 1164 199 61 91 chrY 12571593 12571890 -12141189 - AluSx SINE Alu -14 288 1 301 235 123 0 chrY 12572048 12572129 -12140950 - L1MC4 LINE L1 -1339 6703 6613 272 143 66 77 chrY 12572130 12572221 -12140858 + L1MC4 LINE L1 6614 6703 -1339 1680 157 49 14 chrY 12572232 12572518 -12140561 - AluSx SINE Alu -16 296 1 1733 166 79 15 chrY 12572688 12573031 -12140048 + MLT1B LTR MaLR 24 388 -2 680 245 5 27 chrY 12573971 12574155 -12138924 + FRAM SINE Alu 1 176 0 5801 101 13 0 chrY 12574233 12575495 -12137584 - L1PA7 LINE L1 -1 6153 4856 1105 251 35 35 chrY 12575868 12576183 -12136896 - MER77 LTR ERV1 -17 588 274 814 258 205 7 chrY 12576331 12576614 -12136465 - MLT1A2 LTR MaLR -35 339 1 1608 216 0 7 chrY 12577457 12577762 -12135317 + AluJb SINE Alu 6 308 -4 297 214 0 14 chrY 12577783 12577853 -12135226 + LTR40b LTR ERVL 68 136 -326 372 119 0 0 chrY 12578725 12578784 -12134295 + (CA)n Simple_repeat Simple_repeat 2 60 0 1028 134 17 12 chrY 12579082 12579254 -12133825 + THE1C LTR MaLR 1 173 -202 354 23 0 0 chrY 12579275 12579318 -12133761 + (TATG)n Simple_repeat Simple_repeat 2 44 0 732 139 0 0 chrY 12579318 12579426 -12133653 - AluSg/x SINE Alu -26 286 179 860 132 38 38 chrY 12579433 12579592 -12133487 + THE1C LTR MaLR 217 375 0 189 200 60 0 chrY 12580501 12580551 -12132528 - MIR SINE MIR 0 262 210 1044 256 67 11 chrY 12580585 12580701 -12132378 + AluJb SINE Alu 1 109 -193 243 0 0 0 chrY 12580701 12580728 -12132351 + (CA)n Simple_repeat Simple_repeat 2 28 0 1044 256 67 11 chrY 12580728 12580896 -12132183 + AluJb SINE Alu 109 301 -1 26 0 0 0 chrY 12580896 12580922 -12132157 + AT_rich Low_complexity Low_complexity 1 26 0 234 0 0 0 chrY 12581632 12581658 -12131421 + (A)n Simple_repeat Simple_repeat 1 26 0 1257 266 3 24 chrY 12581686 12581983 -12131096 + AluJb SINE Alu 1 291 -11 21 0 0 0 chrY 12582066 12582087 -12130992 + AT_rich Low_complexity Low_complexity 1 21 0 1169 174 28 71 chrY 12582557 12582891 -12130188 + AluJo SINE Alu 15 336 0 247 228 172 103 chrY 12582897 12583042 -12130037 + MLT1G LTR MaLR 70 224 -366 231 315 21 35 chrY 12583087 12583230 -12129849 + MLT1G LTR MaLR 411 551 -39 1268 210 144 18 chrY 12583239 12583620 -12129459 + MSTB1 LTR MaLR 4 432 0 390 203 39 0 chrY 12583799 12583927 -12129152 + (TA)n Simple_repeat Simple_repeat 2 134 0 31 44 0 0 chrY 12584027 12584072 -12129007 + AT_rich Low_complexity Low_complexity 1 45 0 234 118 68 25 chrY 12584125 12584286 -12128793 + (TA)n Simple_repeat Simple_repeat 2 169 0 1438 183 39 32 chrY 12584411 12584696 -12128383 + AluSq SINE Alu 1 287 -26 30 0 0 0 chrY 12584696 12584726 -12128353 + AT_rich Low_complexity Low_complexity 1 30 0 279 54 0 0 chrY 12584746 12584783 -12128296 + (TG)n Simple_repeat Simple_repeat 2 38 0 210 37 0 0 chrY 12585258 12585285 -12127794 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 257 285 177 16 chrY 12585592 12585778 -12127301 + MIR SINE MIR 28 243 -19 197 132 26 0 chrY 12586291 12586329 -12126750 + (TG)n Simple_repeat Simple_repeat 2 40 0 391 268 22 17 chrY 12586405 12586584 -12126495 + (TA)n Simple_repeat Simple_repeat 1 180 0 27 73 0 0 chrY 12586662 12586717 -12126362 + AT_rich Low_complexity Low_complexity 1 55 0 237 108 0 0 chrY 12586901 12586938 -12126141 + (CA)n Simple_repeat Simple_repeat 2 38 0 359 256 22 33 chrY 12587394 12587440 -12125639 + (TA)n Simple_repeat Simple_repeat 2 47 -132 2087 185 11 42 chrY 12587440 12587888 -12125191 + Tigger2a DNA MER2_type 1 434 0 359 256 22 33 chrY 12587888 12588021 -12125058 + (TA)n Simple_repeat Simple_repeat 47 179 0 303 49 0 0 chrY 12588021 12588062 -12125017 + (CA)n Simple_repeat Simple_repeat 2 42 0 1341 220 25 11 chrY 12588072 12588432 -12124647 - MER47B DNA MER2_type 0 418 1 353 255 13 40 chrY 12588432 12588554 -12124525 + (TA)n Simple_repeat Simple_repeat 2 121 -25 1396 186 71 23 chrY 12588554 12588908 -12124171 + THE1C LTR MaLR 5 375 0 353 255 13 40 chrY 12588908 12588934 -12124145 + (TA)n Simple_repeat Simple_repeat 121 146 0 23 0 0 0 chrY 12588934 12588957 -12124122 + AT_rich Low_complexity Low_complexity 1 23 0 1255 241 0 17 chrY 12588993 12589318 -12123761 - AluJb SINE Alu 0 324 5 42430 51 6 4 chrY 12589383 12595520 -12117559 + L1PA4 LINE L1 1 6152 -3 228 264 23 0 chrY 12595529 12595616 -12117463 + (TA)n Simple_repeat Simple_repeat 2 90 0 225 0 0 0 chrY 12596463 12596488 -12116591 + (T)n Simple_repeat Simple_repeat 1 25 0 927 286 0 0 chrY 12596835 12597045 -12116034 + MER58A DNA MER1_type 9 218 -6 3133 244 45 32 chrY 12597055 12598002 -12115077 - MER45B DNA AcHobo -80 960 1 313 299 22 61 chrY 12598144 12598422 -12114657 - L1ME3 LINE L1 -213 5949 5683 1582 198 10 10 chrY 12599143 12599451 -12113628 - AluSq SINE Alu -5 308 1 2844 124 24 32 chrY 12599481 12599974 -12113105 + LTR15 LTR ERV1 1 489 -4 29 47 0 0 chrY 12600081 12600124 -12112955 + AT_rich Low_complexity Low_complexity 1 43 0 350 261 15 8 chrY 12600348 12600478 -12112601 - L1ME3 LINE L1 -1482 4664 4534 364 315 170 33 chrY 12600481 12600964 -12112115 - L1ME3 LINE L1 -1708 4438 3890 21 0 0 0 chrY 12600993 12601014 -12112065 + AT_rich Low_complexity Low_complexity 1 21 0 224 215 54 27 chrY 12601648 12601797 -12111282 + (TCTA)n Simple_repeat Simple_repeat 2 154 0 188 119 0 24 chrY 12601816 12601858 -12111221 + (TCTA)n Simple_repeat Simple_repeat 4 44 0 1057 234 51 4 chrY 12601967 12602202 -12110877 + AluJb SINE Alu 6 251 -61 36 53 0 0 chrY 12602726 12602783 -12110296 + AT_rich Low_complexity Low_complexity 1 57 0 1835 134 3 72 chrY 12603666 12604001 -12109078 + AluSx SINE Alu 1 312 0 229 178 44 33 chrY 12604303 12604393 -12108686 + (TCTA)n Simple_repeat Simple_repeat 4 94 0 233 106 47 35 chrY 12604631 12604716 -12108363 + (TCTA)n Simple_repeat Simple_repeat 1 86 0 4550 107 48 0 chrY 12605111 12605800 -12107279 + LTR30 LTR ERV1 1 722 0 22 0 0 0 chrY 12606557 12606579 -12106500 + AT_rich Low_complexity Low_complexity 1 22 0 1386 177 8 16 chrY 12606915 12607169 -12105910 - LTR39 LTR ERV1 0 783 532 1214 108 0 0 chrY 12607172 12607334 -12105745 - LTR10D LTR ERV1 -3 510 349 1715 145 105 12 chrY 12607334 12607703 -12105376 + LTR7 LTR ERV1 1 450 0 * 2002 111 33 45 chrY 12607703 12608060 -12105019 - LTR10D LTR ERV1 -160 353 1 1349 225 0 18 chrY 12608060 12608336 -12104743 - LTR39 LTR ERV1 -248 535 265 361 274 147 71 chrY 12608438 12608690 -12104389 + MER92B LTR ERV1 358 628 -8 1929 145 6 10 chrY 12608709 12609020 -12104059 - AluSx SINE Alu -2 310 1 483 139 0 0 chrY 12609225 12609297 -12103782 - LTR6A LTR ERV1 0 564 493 21949 212 27 6 chrY 12609297 12615394 -12097685 - HERVS71 LTR ERV1 -1128 7850 4 3913 101 24 4 chrY 12615396 12615949 -12097130 - LTR6A LTR ERV1 0 564 1 1411 216 42 3 chrY 12617172 12617455 -12095624 + AluJb SINE Alu 3 296 -16 1282 230 56 31 chrY 12617917 12618273 -12094806 + MLT1A1 LTR MaLR 1 365 0 2711 178 10 21 chrY 12618508 12618992 -12094087 + MER61E LTR ERV1 1 479 -90 773 267 79 38 chrY 12619131 12619232 -12093847 + LTR24B LTR ERV1 70 165 -411 1490 137 43 39 chrY 12619232 12619488 -12093591 - AluY SINE Alu -54 257 1 773 267 79 38 chrY 12619488 12619866 -12093213 + LTR24B LTR ERV1 165 569 -7 359 243 129 21 chrY 12620002 12620141 -12092938 - MLT1A2 LTR MaLR -32 358 205 3733 151 25 22 chrY 12620141 12620785 -12092294 - LTR8 LTR ERV1 0 691 43 4804 161 3 8 chrY 12620785 12621567 -12091512 + LTR17 LTR ERV1 3 780 0 3733 151 25 22 chrY 12621567 12621611 -12091468 - LTR8 LTR ERV1 -648 43 1 574 246 6 47 chrY 12621644 12621815 -12091264 - MLT1A2 LTR MaLR -210 164 1 441 149 14 0 chrY 12621896 12621970 -12091109 - LTR49 LTR ERV1 -3 592 518 2259 201 38 59 chrY 12621983 12622562 -12090517 - LTR8A LTR ERV1 -2 725 162 1308 204 0 83 chrY 12622562 12622900 -12090179 + AluJb SINE Alu 1 310 -2 2259 201 38 59 chrY 12622900 12623027 -12090052 - LTR8A LTR ERV1 -565 162 34 1457 168 36 123 chrY 12623104 12623437 -12089642 - LTR49 LTR ERV1 -160 435 149 1813 178 3 0 chrY 12623437 12623723 -12089356 - AluSx SINE Alu -25 287 1 1457 168 36 123 chrY 12623723 12623834 -12089245 - LTR49 LTR ERV1 -446 149 30 1314 192 50 4 chrY 12623834 12624115 -12088964 + LTR24B LTR ERV1 1 294 -282 227 221 39 13 chrY 12624269 12624346 -12088733 + (TA)n Simple_repeat Simple_repeat 1 79 0 1085 228 38 10 chrY 12624432 12624721 -12088358 + LTR24B LTR ERV1 273 569 -7 48 60 0 0 chrY 12624772 12624855 -12088224 + AT_rich Low_complexity Low_complexity 1 83 0 25 0 0 0 chrY 12625015 12625040 -12088039 + AT_rich Low_complexity Low_complexity 1 25 0 1154 235 35 105 chrY 12625043 12625558 -12087521 + LTR8 LTR ERV1 213 691 0 214 93 23 23 chrY 12625693 12625736 -12087343 + (TA)n Simple_repeat Simple_repeat 2 44 0 1494 230 3 19 chrY 12627071 12627388 -12085691 + AluJo SINE Alu 1 312 0 410 53 18 0 chrY 12627728 12627785 -12085294 + (TA)n Simple_repeat Simple_repeat 2 59 0 400 281 29 7 chrY 12628243 12628382 -12084697 + MIR SINE MIR 121 262 0 287 224 2 2 chrY 12628471 12628544 -12084535 + MLT1D LTR MaLR 111 175 -330 345 100 0 0 chrY 12628597 12628647 -12084432 + (TG)n Simple_repeat Simple_repeat 1 50 0 226 301 30 30 chrY 12628849 12628982 -12084097 + (TATATG)n Simple_repeat Simple_repeat 2 134 0 1212 222 41 10 chrY 12629102 12629395 -12083684 + AluJo SINE Alu 5 306 -6 1666 190 3 0 chrY 12630192 12630476 -12082603 + AluSx SINE Alu 1 285 -27 222 253 46 11 chrY 12631396 12631483 -12081596 + (TATATG)n Simple_repeat Simple_repeat 2 91 0 655 295 23 20 chrY 12631498 12631847 -12081232 - L1MA9 LINE L1 -30 6282 5933 4088 99 17 3 chrY 12632082 12632665 -12080414 - LTR10C LTR ERV1 0 591 1 7559 29 0 43 chrY 12633458 12634624 -12078455 - L1PA3 LINE L1 -3 6152 5006 192 320 115 26 chrY 12634827 12634983 -12078096 + L2 LINE L2 110 279 -3035 873 336 148 47 chrY 12635013 12635349 -12077730 + L2 LINE L2 366 667 -2647 1647 199 3 7 chrY 12635349 12635651 -12077428 - AluJo SINE Alu -11 301 1 873 336 148 47 chrY 12635651 12636434 -12076645 + L2 LINE L2 667 1598 -1716 1414 203 66 20 chrY 12636526 12636592 -12076487 + MLT1A1 LTR MaLR 1 63 -302 1823 155 96 9 chrY 12636592 12636927 -12076152 - THE1B LTR MaLR 0 364 1 1414 203 66 20 chrY 12636927 12637209 -12075870 + MLT1A1 LTR MaLR 63 365 0 303 308 206 51 chrY 12637237 12637704 -12075375 + L2 LINE L2 1735 2273 -1041 2161 172 0 73 chrY 12637719 12638183 -12074896 + Tigger2a DNA MER2_type 2 431 -3 1031 179 44 125 chrY 12638458 12638939 -12074140 + LTR7 LTR ERV1 2 443 -7 800 213 21 11 chrY 12638941 12639184 -12073895 - MER4A LTR ERV1 -100 564 261 492 143 20 20 chrY 12639184 12639282 -12073797 - MER4A LTR ERV1 -566 98 1 402 293 90 38 chrY 12639287 12639499 -12073580 - L1M4 LINE L1 -3437 2709 2487 2870 127 14 5 chrY 12640356 12640981 -12072098 + LTR30 LTR ERV1 6 722 0 31042 77 9 1 chrY 12640981 12647653 -12065426 + HERV30 LTR ERV1 1 6795 -1462 8884 70 12 2 chrY 12647655 12648838 -12064241 + HERV30 LTR ERV1 7064 8257 0 4363 131 23 3 chrY 12648838 12649546 -12063533 + LTR30 LTR ERV1 1 722 0 371 121 0 0 chrY 12649721 12649779 -12063300 + Tigger3(Golem) DNA MER2_type 2916 2973 -56 351 189 63 13 chrY 12649780 12649939 -12063140 + (TA)n Simple_repeat Simple_repeat 1 167 0 196 170 32 21 chrY 12649952 12650046 -12063033 + (TA)n Simple_repeat Simple_repeat 2 96 0 24 77 0 0 chrY 12650052 12650104 -12062975 + AT_rich Low_complexity Low_complexity 1 52 0 250 211 57 16 chrY 12650146 12650269 -12062810 + (TA)n Simple_repeat Simple_repeat 2 129 0 366 214 0 0 chrY 12650305 12650389 -12062690 + (CATATA)n Simple_repeat Simple_repeat 1 84 0 222 235 0 74 chrY 12650809 12650840 -12062239 + (TATATG)n Simple_repeat Simple_repeat 4 36 -42 2431 202 50 22 chrY 12650840 12651425 -12061654 - MER7C DNA MER2_type -1 601 1 222 235 0 74 chrY 12651425 12651474 -12061605 + (TATATG)n Simple_repeat Simple_repeat 36 78 0 237 197 33 33 chrY 12651480 12651541 -12061538 - MLT1C LTR MaLR -6 461 401 1083 190 0 0 chrY 12651543 12651722 -12061357 + AluSx SINE Alu 1 179 -133 302 266 105 27 chrY 12651752 12652008 -12061071 - MLT1C LTR MaLR -119 386 94 1644 162 16 0 chrY 12652327 12652630 -12060449 + L1P LINE L1 3288 3595 -2551 1119 221 149 75 chrY 12652845 12653448 -12059631 - LTR1B LTR ERV1 -178 648 1 404 227 64 0 chrY 12653851 12653961 -12059118 + MER57A LTR ERV1 287 403 0 235 244 8 8 chrY 12653965 12654092 -12058987 + (TA)n Simple_repeat Simple_repeat 1 127 0 38574 59 15 4 chrY 12655060 12661132 -12051947 + L1PA3 LINE L1 9 6152 -3 29 47 0 0 chrY 12661190 12661233 -12051846 + AT_rich Low_complexity Low_complexity 1 43 0 314 320 74 34 chrY 12661290 12661465 -12051614 + L1ME LINE L1 981 1162 -5785 204 219 68 41 chrY 12661494 12661567 -12051512 + L3 LINE CR1 524 598 -979 388 330 17 11 chrY 12661959 12662150 -12050929 + L1ME LINE L1 1393 1712 -5235 1923 168 0 23 chrY 12662351 12662660 -12050419 + AluSx SINE Alu 1 302 -10 297 265 17 0 chrY 12662842 12662959 -12050120 + L1ME LINE L1 2926 3044 -4094 391 43 0 0 chrY 12662984 12663031 -12050048 - L1PA2 LINE L1 -57 6098 6052 691 217 77 19 chrY 12663049 12663256 -12049823 + L1PB4 LINE L1 5924 6142 -14 535 301 36 18 chrY 12663633 12663909 -12049170 - L1ME LINE L1 -373 5791 5511 442 299 18 24 chrY 12665083 12665250 -12047829 + MIR SINE MIR 72 237 -25 2380 68 0 10 chrY 12665276 12665587 -12047492 + AluY SINE Alu 1 308 -3 198 209 0 0 chrY 12665587 12665630 -12047449 + (TA)n Simple_repeat Simple_repeat 1 43 0 31 44 0 0 chrY 12665730 12665775 -12047304 + AT_rich Low_complexity Low_complexity 1 45 0 306 73 0 0 chrY 12666907 12666948 -12046131 + (TATG)n Simple_repeat Simple_repeat 2 42 0 827 233 0 0 chrY 12666953 12667103 -12045976 - FRAM SINE Alu -31 145 1 1335 218 22 26 chrY 12667291 12667603 -12045476 - AluJo SINE Alu -1 311 1 207 0 0 0 chrY 12669604 12669627 -12043452 + (CA)n Simple_repeat Simple_repeat 2 24 0 200 194 0 0 chrY 12669627 12669663 -12043416 + GA-rich Low_complexity Low_complexity 1 36 0 384 192 14 14 chrY 12670243 12670316 -12042763 + AluJ/FLAM SINE Alu 3 75 -227 2366 143 8 13 chrY 12670316 12670693 -12042386 + THE1C LTR MaLR 1 375 0 711 223 7 0 chrY 12670696 12670835 -12042244 + FRAM SINE Alu 26 165 -11 21 57 0 0 chrY 12671649 12671684 -12041395 + AT_rich Low_complexity Low_complexity 1 35 0 225 240 10 39 chrY 12672249 12672353 -12040726 + (CATA)n Simple_repeat Simple_repeat 4 104 0 294 29 0 0 chrY 12672719 12672754 -12040325 + (TG)n Simple_repeat Simple_repeat 2 36 0 25 0 0 0 chrY 12672870 12672895 -12040184 + AT_rich Low_complexity Low_complexity 1 25 0 1357 205 52 0 chrY 12674222 12674490 -12038589 + AluJb SINE Alu 1 282 -30 1213 205 116 16 chrY 12675048 12675306 -12037773 - AluJo SINE Alu -18 284 1 23 0 0 0 chrY 12675836 12675859 -12037220 + AT_rich Low_complexity Low_complexity 1 23 0 304 119 0 0 chrY 12676348 12676390 -12036689 - Alu SINE Alu -258 43 2 1117 307 73 16 chrY 12676391 12676841 -12036238 + MER82 DNA MER2_type 146 621 -32 1819 168 26 32 chrY 12677250 12677615 -12035464 - THE1C LTR MaLR 0 457 1 1486 193 11 25 chrY 12678360 12678645 -12034434 + AluJo SINE Alu 2 282 -30 26 30 0 0 chrY 12678823 12678856 -12034223 + AT_rich Low_complexity Low_complexity 1 33 0 404 162 9 0 chrY 12680083 12680188 -12032891 + CT-rich Low_complexity Low_complexity 2 107 0 1792 159 28 0 chrY 12680479 12680769 -12032310 - AluSc SINE Alu -11 298 1 1865 113 9 64 chrY 12680925 12681251 -12031828 + AluY SINE Alu 1 308 -3 1869 148 0 0 chrY 12681397 12681744 -12031335 - AluSg SINE Alu 0 347 1 429 220 14 103 chrY 12681744 12681914 -12031165 - L1M4 LINE L1 -830 5814 5664 1411 193 3 44 chrY 12681914 12682229 -12030850 - AluSq SINE Alu 0 303 1 429 220 14 103 chrY 12682229 12682271 -12030808 - L1M4 LINE L1 -980 5664 5620 376 281 95 30 chrY 12682449 12682712 -12030367 - L1M4 LINE L1 -1648 4996 4717 280 284 115 32 chrY 12682766 12682984 -12030095 - L1M4 LINE L1 -2019 4625 4390 1608 187 0 66 chrY 12683057 12683421 -12029658 - MLT1B LTR MaLR -45 345 6 35 63 0 0 chrY 12683608 12683671 -12029408 + AT_rich Low_complexity Low_complexity 1 63 0 30 69 0 0 chrY 12683946 12684004 -12029075 + AT_rich Low_complexity Low_complexity 1 58 0 239 211 22 56 chrY 12684007 12684187 -12028892 + (TTATA)n Simple_repeat Simple_repeat 3 176 0 * 241 215 15 52 chrY 12684124 12684259 -12028820 + (TATAA)n Simple_repeat Simple_repeat 5 134 0 360 240 29 18 chrY 12684337 12684508 -12028571 + (TA)n Simple_repeat Simple_repeat 2 174 0 860 235 83 114 chrY 12684537 12685112 -12027967 - L1M4 LINE L1 -4542 2104 1513 1339 240 31 19 chrY 12685112 12685471 -12027608 - MLT1A1 LTR MaLR -2 363 1 860 235 83 114 chrY 12685471 12685700 -12027379 - L1M4 LINE L1 -5133 1513 1279 1579 191 21 3 chrY 12685700 12685982 -12027097 - AluJb SINE Alu -25 287 1 860 235 83 114 chrY 12685982 12686433 -12026646 - L1M4 LINE L1 -5367 1279 879 238 316 26 51 chrY 12686622 12686739 -12026340 - L1M4 LINE L1 -5843 699 586 594 230 0 0 chrY 12688102 12688215 -12024864 + FLAM_C SINE Alu 6 118 -25 1850 109 4 4 chrY 12688823 12689080 -12023999 + AluY SINE Alu 39 295 -16 1880 138 11 11 chrY 12689485 12689768 -12023311 + AluSg SINE Alu 1 283 -27 239 253 0 46 chrY 12689768 12689855 -12023224 - L1MC4 LINE L1 -1346 6696 6614 32 26 0 0 chrY 12689855 12689894 -12023185 + AT_rich Low_complexity Low_complexity 1 39 0 1434 176 16 12 chrY 12690162 12690417 -12022662 - AluSx SINE Alu -32 280 25 3769 171 3 18 chrY 12690878 12691596 -12021483 + L1PA13 LINE L1 5457 6163 0 333 47 0 0 chrY 12692594 12692637 -12020442 + (CA)n Simple_repeat Simple_repeat 2 44 0 6349 96 8 0 chrY 12693218 12694427 -12018652 + L1PA7 LINE L1 4937 6153 -1 316 283 51 14 chrY 12694912 12695050 -12018029 - L1MA10 LINE L1 -3 6331 6189 216 154 39 0 chrY 12695144 12695196 -12017883 + T-rich Low_complexity Low_complexity 6 59 0 5725 52 1 0 chrY 12695198 12695908 -12017171 - L1PA5 LINE L1 -11 6143 5433 6808 47 1 1 chrY 12695908 12696774 -12016305 + L1P LINE L1 3001 3866 -2280 831 253 105 43 chrY 12696789 12697752 -12015327 - L1ME2 LINE L1 -242 5922 4876 1900 155 3 0 chrY 12697786 12698077 -12015002 + AluSx SINE Alu 1 292 -20 632 36 12 0 chrY 12698078 12698161 -12014918 + (TAGA)n Simple_repeat Simple_repeat 1 84 0 1347 170 40 64 chrY 12698699 12699053 -12014026 - MER4A LTR ERV1 0 664 261 440 188 31 10 chrY 12699053 12699149 -12013930 - MER4A LTR ERV1 -566 98 1 355 188 31 50 chrY 12700083 12700243 -12012836 + (TTATA)n Simple_repeat Simple_repeat 1 157 0 265 306 210 16 chrY 12700668 12700792 -12012287 - MER5A DNA MER1_type -7 182 35 660 278 44 29 chrY 12700971 12701176 -12011903 + MER20 DNA MER1_type 7 214 -5 182 314 191 0 chrY 12701216 12701321 -12011758 + L2 LINE L2 2771 2895 -419 1415 170 8 0 chrY 12701674 12701921 -12011158 + AluSx SINE Alu 33 281 -31 576 77 0 0 chrY 12701924 12702002 -12011077 + (TAAAA)n Simple_repeat Simple_repeat 2 79 0 2794 205 39 15 chrY 12702705 12702826 -12010253 - LTR26 LTR ERV1 0 603 486 1631 179 58 28 chrY 12702826 12703190 -12009889 - THE1C LTR MaLR 0 375 1 2794 205 39 15 chrY 12703190 12703657 -12009422 - LTR26 LTR ERV1 -117 486 1 184 316 38 13 chrY 12704146 12704225 -12008854 - L2 LINE L2 -9 3304 3224 27 0 0 0 chrY 12704564 12704591 -12008488 + AT_rich Low_complexity Low_complexity 1 27 0 1122 240 10 10 chrY 12704624 12704916 -12008163 + AluJo SINE Alu 21 312 0 2462 174 7 93 chrY 12704996 12705600 -12007479 - MER4B LTR ERV1 -58 552 1 1613 204 0 0 chrY 12705834 12706157 -12006922 - AluSx SINE Alu 0 326 4 2422 157 135 60 chrY 12706474 12707028 -12006051 + LTR4 LTR ERV1 1 596 0 1630 214 118 31 chrY 12707029 12707148 -12005931 + L1MC3 LINE L1 7221 7328 -457 2623 183 85 0 chrY 12707148 12707655 -12005424 + MER41C LTR ERV1 5 554 0 1630 214 118 31 chrY 12707655 12708044 -12005035 + L1MC3 LINE L1 7328 7773 -12 1115 222 22 30 chrY 12708078 12708348 -12004731 + AluJo SINE Alu 33 300 -12 1781 174 3 0 chrY 12709368 12709666 -12003413 - AluSx SINE Alu -13 299 1 261 0 0 0 chrY 12709742 12709771 -12003308 + (TG)n Simple_repeat Simple_repeat 2 30 0 21 0 0 0 chrY 12710291 12710312 -12002767 + AT_rich Low_complexity Low_complexity 1 21 0 394 331 104 38 chrY 12710698 12711091 -12001988 + L2 LINE L2 2559 2977 -337 234 246 45 141 chrY 12711114 12711313 -12001766 + L2 LINE L2 3089 3268 -45 2148 218 51 16 chrY 12711429 12711980 -12001099 + L1PB4 LINE L1 5582 6148 -8 300 111 0 0 chrY 12712224 12712269 -12000810 + (CA)n Simple_repeat Simple_repeat 2 46 0 203 220 20 0 chrY 12712269 12712319 -12000760 + (TA)n Simple_repeat Simple_repeat 2 52 0 1465 318 59 14 chrY 12712333 12713299 -11999780 - L1M4 LINE L1 -2989 3157 2148 1186 312 47 18 chrY 12713308 12713880 -11999199 - L1ME1 LINE L1 -5 6161 5574 316 156 46 0 chrY 12714122 12714231 -11998848 + (TCTA)n Simple_repeat Simple_repeat 1 114 0 181 353 66 16 chrY 12715166 12715288 -11997791 + L2 LINE L2 2951 3078 -194 989 219 82 23 chrY 12715655 12715772 -11997307 + AluJo SINE Alu 5 114 -198 231 36 0 0 chrY 12715772 12715800 -11997279 + (CAAT)n Simple_repeat Simple_repeat 2 29 0 989 219 82 23 chrY 12715800 12715938 -11997141 + AluJo SINE Alu 114 275 -37 926 228 16 0 chrY 12715964 12716153 -11996926 + AluJo SINE Alu 84 275 -37 1951 161 69 0 chrY 12716366 12716715 -11996364 - THE1C LTR MaLR -2 373 1 1871 196 40 11 chrY 12717965 12718322 -11994757 + L1PB3 LINE L1 5675 6049 -105 1671 178 4 4 chrY 12718322 12718603 -11994476 + AluSq SINE Alu 1 281 -32 1871 196 40 11 chrY 12718603 12718694 -11994385 + L1PB3 LINE L1 6049 6136 -18 2680 134 62 40 chrY 12719392 12719923 -11993156 - MER41A LTR ERV1 -1 553 11 394 188 71 0 chrY 12720499 12720584 -11992495 - L1MA7 LINE L1 -310 5981 5891 4455 80 3 13 chrY 12720584 12720800 -11992279 + LTR10C LTR ERV1 1 218 -373 3266 132 28 22 chrY 12720800 12721345 -11991734 + LTR14 LTR ERVK 1 548 0 4455 80 3 13 chrY 12721345 12721725 -11991354 + LTR10C LTR ERV1 218 591 0 4545 144 26 22 chrY 12722347 12723154 -11989925 - L1PA12 LINE L1 -2 6166 5357 313 226 0 121 chrY 12723445 12723569 -11989510 - L1MC4 LINE L1 -1339 6703 6595 1111 159 22 9 chrY 12724653 12724880 -11988199 + L1MA8 LINE L1 6057 6286 -5 21 0 0 0 chrY 12724880 12724901 -11988178 + AT_rich Low_complexity Low_complexity 1 21 0 556 311 95 33 chrY 12724906 12725211 -11987868 + MLT1G LTR MaLR 59 382 -208 222 37 0 0 chrY 12725485 12725512 -11987567 + (CA)n Simple_repeat Simple_repeat 1 27 0 26 64 0 0 chrY 12726090 12726137 -11986942 + AT_rich Low_complexity Low_complexity 1 47 0 38 75 0 0 chrY 12726681 12726761 -11986318 + AT_rich Low_complexity Low_complexity 1 80 0 1299 252 3 10 chrY 12727525 12727838 -11985241 + AluJb SINE Alu 1 311 -1 2198 202 58 7 chrY 12727848 12728299 -11984780 - MER66B LTR ERV1 -10 476 3 349 265 0 0 chrY 12728901 12728984 -11984095 + L1MC4 LINE L1 6614 6696 -1346 222 213 0 0 chrY 12729249 12729296 -11983783 + A-rich Low_complexity Low_complexity 2 48 0 21 0 0 0 chrY 12729787 12729808 -11983271 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chrY 12730528 12730549 -11982530 + AT_rich Low_complexity Low_complexity 1 21 0 1099 194 16 16 chrY 12730616 12730858 -11982221 - L1P LINE L1 -1407 4739 4498 634 198 11 0 chrY 12730931 12731108 -11981971 + (CAT)n Simple_repeat Simple_repeat 1 179 0 527 226 6 0 chrY 12731145 12731309 -11981770 + (CAT)n Simple_repeat Simple_repeat 1 165 0 1965 129 0 7 chrY 12732095 12732382 -11980697 - AluSc SINE Alu -3 306 22 21 0 0 0 chrY 12732947 12732968 -11980111 + AT_rich Low_complexity Low_complexity 1 21 0 874 245 10 10 chrY 12733703 12733903 -11979176 - AluJb SINE Alu -26 286 87 4869 57 0 0 chrY 12733950 12734570 -11978509 - L1P LINE L1 -2228 3918 3299 6158 44 0 0 chrY 12734570 12735316 -11977763 + L1PA3 LINE L1 5404 6152 -3 22 35 0 0 chrY 12735330 12735359 -11977720 + AT_rich Low_complexity Low_complexity 1 29 0 286 258 124 11 chrY 12736530 12736619 -11976460 - MER5A DNA MER1_type 0 189 91 772 252 88 44 chrY 12736676 12737012 -11976067 - L1MA7 LINE L1 -10 6290 5922 2502 109 5 3 chrY 12737545 12737922 -11975157 - L1PB1 LINE L1 0 6151 5774 220 113 0 57 chrY 12737937 12737990 -11975089 + (TATAA)n Simple_repeat Simple_repeat 5 54 0 21576 99 3 3 chrY 12737999 12741865 -11971214 - L1PA6 LINE L1 0 6154 2235 12772 156 14 35 chrY 12741950 12742745 -11970334 - L1PA6 LINE L1 -3828 2318 1508 2031 139 0 13 chrY 12742745 12743055 -11970024 - AluY SINE Alu -5 306 1 12772 156 14 35 chrY 12743055 12744617 -11968462 - L1PA6 LINE L1 -4638 1508 11 225 0 0 0 chrY 12745103 12745128 -11967951 + (CA)n Simple_repeat Simple_repeat 2 26 0 1883 172 32 0 chrY 12745443 12745791 -11967288 - MLT1B LTR MaLR -8 382 24 399 133 0 0 chrY 12745840 12745900 -11967179 - MLT1B LTR MaLR -307 83 24 2167 140 57 5 chrY 12745991 12746363 -11966716 + L1PA13 LINE L1 5772 6162 -1 3145 115 8 33 chrY 12746565 12746829 -11966250 + MER9 LTR ERVK 1 247 -264 2170 127 0 0 chrY 12746829 12747129 -11965950 - AluSg SINE Alu -10 300 1 3145 115 8 33 chrY 12747129 12747384 -11965695 + MER9 LTR ERVK 247 507 -4 1852 112 109 12 chrY 12747841 12748172 -11964907 - L1PA13 LINE L1 -4 6159 5797 1621 177 7 30 chrY 12748352 12748657 -11964422 + AluSx SINE Alu 6 303 -9 24 32 0 0 chrY 12749528 12749559 -11963520 + AT_rich Low_complexity Low_complexity 1 31 0 225 211 0 0 chrY 12749673 12749725 -11963354 - L1PA14 LINE L1 -131 6030 5979 391 49 16 0 chrY 12749727 12749788 -11963291 + L1PA15 LINE L1 6101 6162 -3 21 0 0 0 chrY 12749955 12749976 -11963103 + AT_rich Low_complexity Low_complexity 1 21 0 30 45 0 0 chrY 12750675 12750719 -11962360 + AT_rich Low_complexity Low_complexity 1 44 0 1857 186 11 24 chrY 12750772 12751144 -11961935 + MLT1B LTR MaLR 24 390 0 480 139 10 0 chrY 12751148 12751249 -11961830 + MLT1B LTR MaLR 162 263 -127 318 270 0 0 chrY 12751244 12751318 -11961761 + MLT1B LTR MaLR 384 457 -10 * 192 158 0 0 chrY 12751364 12751402 -11961677 + (TA)n Simple_repeat Simple_repeat 1 38 0 313 261 34 11 chrY 12751404 12751492 -11961587 + L1MC4 LINE L1 6614 6703 -1339 * 344 216 34 11 chrY 12751427 12751515 -11961564 - L1MC4 LINE L1 -1339 6703 6614 273 266 0 0 chrY 12751596 12751660 -11961419 - MSTC LTR MaLR -117 311 248 28 0 0 0 chrY 12752132 12752160 -11960919 + AT_rich Low_complexity Low_complexity 1 28 0 1854 219 50 89 chrY 12752395 12752772 -11960307 - L1MB4 LINE L1 -2 6178 5841 1867 151 7 13 chrY 12752772 12753077 -11960002 - AluSq SINE Alu -10 303 1 1854 219 50 89 chrY 12753077 12753420 -11959659 - L1MB4 LINE L1 -339 5841 5486 565 197 60 0 chrY 12753455 12753572 -11959507 - AluJo SINE Alu -176 136 13 1489 251 34 14 chrY 12753763 12754177 -11958902 - MSTC LTR MaLR -4 424 3 257 180 29 8 chrY 12754388 12754457 -11958622 - MLT2B3 LTR ERVL 0 515 455 1114 209 3 118 chrY 12754502 12754833 -11958246 + AluJb SINE Alu 1 293 -9 2366 203 34 23 chrY 12754871 12755181 -11957898 - MLT2B3 LTR ERVL -35 508 212 477 47 0 0 chrY 12755181 12755245 -11957834 + (TG)n Simple_repeat Simple_repeat 2 65 0 2366 203 34 23 chrY 12755245 12755452 -11957627 - MLT2B3 LTR ERVL -331 212 9 201 318 153 12 chrY 12756553 12756723 -11956356 + L2 LINE L2 3116 3309 -4 892 249 9 18 chrY 12756828 12757049 -11956030 - Tigger3(Golem) DNA MER2_type -40 2989 2771 559 270 44 0 chrY 12757045 12757182 -11955897 - Tigger3(Golem) DNA MER2_type -2886 143 1 * 704 216 0 0 chrY 12758002 12758141 -11954938 + AluJb SINE Alu 158 296 -16 816 275 5 0 chrY 12758202 12758391 -11954688 - MLT2B3 LTR ERVL -46 508 319 265 314 10 10 chrY 12758672 12758774 -11954305 + GA-rich Low_complexity Low_complexity 6 107 0 2428 140 56 9 chrY 12758976 12759439 -11953640 + L1MA3 LINE L1 5821 6305 0 291 104 0 0 chrY 12759539 12759587 -11953492 + (CA)n Simple_repeat Simple_repeat 2 49 0 928 267 102 35 chrY 12760137 12760677 -11952402 + L1ME2 LINE L1 5581 6156 -8 25 0 0 0 chrY 12760757 12760782 -11952297 + AT_rich Low_complexity Low_complexity 1 25 0 916 201 16 0 chrY 12761255 12761444 -11951635 - L1PB4 LINE L1 0 6156 5965 919 168 6 24 chrY 12761447 12761614 -11951465 - MER1B DNA MER1_type 0 339 176 3285 184 21 35 chrY 12761643 12762366 -11950713 - L1PB4 LINE L1 -185 5971 5259 437 33 33 0 chrY 12762522 12762583 -11950496 - L1PA4 LINE L1 -4 6151 6089 22 0 0 0 chrY 12762765 12762787 -11950292 + AT_rich Low_complexity Low_complexity 1 22 0 24 53 0 0 chrY 12763032 12763070 -11950009 + AT_rich Low_complexity Low_complexity 1 38 0 231 294 186 0 chrY 12763208 12763412 -11949667 - HAL1 LINE L1 -982 1525 1284 1541 221 0 0 chrY 12763445 12763739 -11949340 - AluJb SINE Alu -18 294 1 714 82 0 43 chrY 12763744 12763989 -11949090 - AluSc SINE Alu 0 335 2 1524 201 0 38 chrY 12764676 12764989 -11948090 - AluJb SINE Alu -11 301 1 228 222 16 16 chrY 12765056 12765119 -11947960 + (TTA)n Simple_repeat Simple_repeat 2 64 0 21 0 0 0 chrY 12765823 12765844 -11947235 + AT_rich Low_complexity Low_complexity 1 21 0 2698 128 90 0 chrY 12765845 12766289 -11946790 - LTR19A LTR ERV1 -2 484 1 189 171 0 0 chrY 12766640 12766675 -11946404 + CT-rich Low_complexity Low_complexity 2 36 0 5936 108 11 9 chrY 12766726 12768207 -11944872 - L1PA7 LINE L1 -3 6151 4667 8728 157 15 32 chrY 12768207 12769854 -11943225 + L1P LINE L1 702 2321 -3825 1855 186 9 0 chrY 12769873 12770222 -11942857 - L1PB3 LINE L1 -2 6152 5801 545 258 18 137 chrY 12770282 12770306 -11942773 + MLT1A2 LTR MaLR 2 27 -347 327 25 0 0 chrY 12770306 12770346 -11942733 + (CA)n Simple_repeat Simple_repeat 2 41 0 545 258 18 137 chrY 12770346 12770683 -11942396 + MLT1A2 LTR MaLR 27 324 -50 498 156 21 10 chrY 12770684 12770780 -11942299 + MER4A LTR ERV1 1 97 -567 * 1638 164 8 22 chrY 12770777 12771130 -11941949 + MER4A LTR ERV1 257 663 -1 3474 154 49 6 chrY 12771716 12772345 -11940734 - L1PA11 LINE L1 -6 6168 5513 339 78 0 0 chrY 12772458 12772509 -11940570 + (TG)n Simple_repeat Simple_repeat 2 52 0 3329 152 59 3 chrY 12775202 12775776 -11937303 - MER4B LTR ERV1 -2 608 3 247 202 20 0 chrY 12775778 12775877 -11937202 + (TA)n Simple_repeat Simple_repeat 1 101 0 245 242 36 30 chrY 12775899 12776064 -11937015 + (TATATG)n Simple_repeat Simple_repeat 2 167 0 * 432 215 35 17 chrY 12775951 12776424 -11936655 + (TA)n Simple_repeat Simple_repeat 1 481 0 2356 90 0 3 chrY 12777615 12777927 -11935152 - AluY SINE Alu 0 311 1 369 205 0 0 chrY 12777962 12778040 -11935039 - MER6 DNA MER2_type -4 861 784 1106 207 74 30 chrY 12778040 12778310 -11934769 + AluJb SINE Alu 1 282 -30 3220 213 60 30 chrY 12778328 12778423 -11934656 - MER6 DNA MER2_type -70 795 704 1740 134 30 33 chrY 12778423 12778722 -11934357 - AluSq SINE Alu -15 298 1 3220 213 60 30 chrY 12778722 12779397 -11933682 - MER6 DNA MER2_type -161 704 2 1713 168 45 28 chrY 12779439 12779796 -11933283 + THE1B LTR MaLR 1 363 -1 269 354 25 34 chrY 12780000 12780237 -11932842 - MLT1I LTR MaLR -67 342 108 1233 222 7 24 chrY 12782637 12782925 -11930154 + AluJo SINE Alu 1 283 -19 21 57 0 0 chrY 12782969 12783004 -11930075 + AT_rich Low_complexity Low_complexity 1 35 0 182 317 73 24 chrY 12783867 12783990 -11929089 + L2 LINE L2 2437 2565 -749 599 187 66 86 chrY 12784071 12784269 -11928810 + MLT1B LTR MaLR 4 197 -193 328 95 16 16 chrY 12784271 12784334 -11928745 + (TC)n Simple_repeat Simple_repeat 2 64 0 680 241 0 0 chrY 12784336 12784477 -11928602 + MLT1B LTR MaLR 187 327 -63 1224 190 0 9 chrY 12784998 12785219 -11927860 + MLT1A1 LTR MaLR 1 219 -146 1316 233 93 24 chrY 12785219 12785639 -11927440 - L1MC3 LINE L1 -1895 5890 5442 645 219 26 7 chrY 12785659 12785814 -11927265 + MLT1A1 LTR MaLR 207 364 -1 2232 85 0 0 chrY 12786272 12786591 -11926488 + AluY SINE Alu 1 319 0 3027 173 33 6 chrY 12786773 12787283 -11925796 + MER1A DNA MER1_type 6 529 0 1199 209 150 66 chrY 12787399 12787606 -11925473 - MLT1D LTR MaLR -2 503 315 1201 209 106 11 chrY 12787606 12787879 -11925200 - AluJo SINE Alu -3 299 1 1199 209 150 66 chrY 12787879 12788112 -11924967 - MLT1D LTR MaLR -190 315 26 1241 273 10 0 chrY 12788530 12788865 -11924214 - AluJo SINE Alu 0 302 1 42 20 0 0 chrY 12788867 12788916 -11924163 + AT_rich Low_complexity Low_complexity 1 49 0 568 168 32 170 chrY 12788965 12789074 -11924005 + L1MA9 LINE L1 5900 6022 -277 3499 133 8 47 chrY 12789074 12789698 -11923381 - LTR43 LTR ERV1 0 602 3 568 168 32 170 chrY 12789698 12789885 -11923194 + L1MA9 LINE L1 6022 6256 -43 1814 188 49 46 chrY 12789897 12790431 -11922648 + MLT2A2 LTR ERVL 1 554 0 1320 256 19 6 chrY 12790671 12791031 -11922048 + MLT1A1 LTR MaLR 1 365 0 2577 189 71 25 chrY 12791685 12791888 -11921191 - LTR29 LTR ERV1 0 622 430 1835 156 45 28 chrY 12791888 12792246 -11920833 - THE1B LTR MaLR 0 364 1 2577 189 71 25 chrY 12792246 12792635 -11920444 - LTR29 LTR ERV1 -192 430 3 1422 199 57 46 chrY 12793654 12794025 -11919054 - THE1C LTR MaLR 0 375 1 623 159 38 0 chrY 12794393 12794525 -11918554 - L1MA7 LINE L1 0 6291 6155 204 233 23 23 chrY 12794707 12794750 -11918329 - MER5A DNA MER1_type -140 49 7 674 137 69 15 chrY 12795959 12796090 -11916989 - Tigger5 DNA MER2_type -84 2239 2102 207 0 0 0 chrY 12796090 12796113 -11916966 + (A)n Simple_repeat Simple_repeat 1 23 0 621 297 64 30 chrY 12796238 12796534 -11916545 + MER20B DNA MER1_type 40 345 -438 180 0 0 0 chrY 12796884 12796904 -11916175 + (CAA)n Simple_repeat Simple_repeat 2 21 0 589 174 103 71 chrY 12797831 12798015 -11915064 + L1MA9 LINE L1 5844 6033 -279 1014 203 25 0 chrY 12798227 12798463 -11914616 + L1MA7 LINE L1 6044 6285 -6 1735 162 4 0 chrY 12798545 12798847 -11914232 + AluSx SINE Alu 6 308 0 1436 168 8 0 chrY 12798864 12799108 -11913971 + AluSq SINE Alu 1 246 -67 291 137 0 0 chrY 12799155 12799206 -11913873 + AluSq SINE Alu 250 300 -2 315 0 0 0 chrY 12801790 12801825 -11911254 + (TG)n Simple_repeat Simple_repeat 2 36 0 1565 110 31 82 chrY 12802055 12802373 -11910706 + AluY SINE Alu 1 302 -9 6018 146 75 48 chrY 12803416 12803595 -11909484 - LTR19-int LTR ERV1 -1565 4021 3848 1816 52 4 0 chrY 12803595 12803857 -11909222 + L1PA3 LINE L1 5915 6177 0 6018 146 75 48 chrY 12803857 12805041 -11908038 - LTR19-int LTR ERV1 -1738 3848 2620 396 207 18 51 chrY 12805041 12805159 -11907920 - L1M LINE L1 -778 5388 5281 304 344 57 37 chrY 12805203 12805447 -11907632 + L1ME3A LINE L1 5913 6161 -9 23 97 0 0 chrY 12806290 12806362 -11906717 + AT_rich Low_complexity Low_complexity 1 72 0 1024 274 43 14 chrY 12806735 12807086 -11905993 + MLT1A1 LTR MaLR 1 361 -4 427 81 14 14 chrY 12807124 12807198 -11905881 + (TAGA)n Simple_repeat Simple_repeat 4 77 0 440 302 87 40 chrY 12807409 12807730 -11905349 - L1MC/D LINE L1 -2067 5741 5406 1477 186 24 21 chrY 12808001 12808292 -11904787 - AluJo SINE Alu -16 296 5 1362 179 101 18 chrY 12808664 12809036 -11904043 + MSTA LTR MaLR 1 426 -2 204 176 59 0 chrY 12809739 12809841 -11903238 + (TA)n Simple_repeat Simple_repeat 1 108 0 21 36 0 0 chrY 12809985 12810013 -11903066 + AT_rich Low_complexity Low_complexity 1 28 0 303 263 241 53 chrY 12811230 12811363 -11901716 + MER20 DNA MER1_type 62 219 0 1070 225 69 54 chrY 12811665 12811884 -11901195 - MSTB1 LTR MaLR 0 432 205 1454 198 14 10 chrY 12811884 12812057 -11901022 - AluJb SINE Alu -12 300 124 215 31 31 0 chrY 12812057 12812089 -11900990 + (TTTAA)n Simple_repeat Simple_repeat 3 35 0 1454 198 14 10 chrY 12812089 12812208 -11900871 - AluJb SINE Alu -188 124 7 1070 225 69 54 chrY 12812208 12812321 -11900758 - MSTB1 LTR MaLR -227 205 95 22 0 0 0 chrY 12813142 12813164 -11899915 + AT_rich Low_complexity Low_complexity 1 22 0 29 28 0 0 chrY 12813559 12813595 -11899484 + AT_rich Low_complexity Low_complexity 1 36 0 1368 218 14 0 chrY 12813604 12813893 -11899186 - AluJb SINE Alu -19 293 1 1637 201 9 3 chrY 12813982 12814305 -11898774 + MLT1A1 LTR MaLR 1 325 -40 745 182 11 0 chrY 12814665 12814937 -11898142 + CT-rich Low_complexity Low_complexity 1 275 0 1142 177 0 25 chrY 12815917 12816115 -11896964 - AluJo SINE Alu -25 287 95 4905 123 9 5 chrY 12817628 12818389 -11894690 - L1PA7 LINE L1 -1357 4789 4026 1901 125 37 0 chrY 12818376 12819610 -11893469 + L1PA7 LINE L1 4766 6150 -4 * 1651 187 101 20 chrY 12819906 12820302 -11892777 - MSTA LTR MaLR 0 428 1 290 25 0 0 chrY 12820423 12820463 -11892616 - L1PA3 LINE L1 -4 6151 6112 279 0 0 0 chrY 12821260 12821291 -11891788 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 888 224 0 93 chrY 12821718 12821955 -11891124 - AluJo SINE Alu -97 215 1 221 393 19 0 chrY 12822108 12822215 -11890864 + MER5A DNA MER1_type 7 115 -74 836 246 0 0 chrY 12822866 12823033 -11890046 + AluJb SINE Alu 127 293 -19 4630 106 39 101 chrY 12823248 12823917 -11889162 + LTR12 LTR ERV1 5 609 -217 198 103 0 0 chrY 12823917 12823946 -11889133 + (TG)n Simple_repeat Simple_repeat 2 30 0 4630 106 39 101 chrY 12823946 12824151 -11888928 + LTR12 LTR ERV1 609 825 -1 1870 142 11 0 chrY 12824151 12824426 -11888653 + AluSq SINE Alu 27 304 -9 940 123 0 0 chrY 12824989 12825119 -11887960 + AluY SINE Alu 1 130 -181 429 263 0 0 chrY 12825132 12825269 -11887810 + (CATATA)n Simple_repeat Simple_repeat 2 138 0 1026 77 5 168 chrY 12825271 12825480 -11887599 + AluY SINE Alu 134 308 -3 1832 144 6 41 chrY 12825798 12826117 -11886962 - AluSx SINE Alu -4 308 1 5878 59 1 0 chrY 12826168 12826915 -11886164 - L1PA4 LINE L1 -3 6152 5405 330 279 0 29 chrY 12827370 12827510 -11885569 + (TATATG)n Simple_repeat Simple_repeat 2 137 0 * 334 286 19 0 chrY 12827431 12827585 -11885494 + (TA)n Simple_repeat Simple_repeat 2 158 0 265 254 41 6 chrY 12827601 12827770 -11885309 + (TA)n Simple_repeat Simple_repeat 2 176 0 444 172 0 54 chrY 12827772 12827865 -11885214 - AluJ/FLAM SINE Alu -224 88 1 255 167 0 36 chrY 12828544 12828628 -11884451 + (TA)n Simple_repeat Simple_repeat 2 82 0 2341 57 40 3 chrY 12828860 12829158 -11883921 + AluY SINE Alu 1 309 -2 21 0 0 0 chrY 12830235 12830256 -11882823 + AT_rich Low_complexity Low_complexity 1 21 0 535 266 68 16 chrY 12831074 12831266 -11881813 + L1MDa LINE L1 27 228 -6312 288 198 47 47 chrY 12831426 12831532 -11881547 + MLT2B1 LTR ERVL 13 118 -402 1842 153 27 3 chrY 12831558 12831852 -11881227 - AluSq SINE Alu -12 301 1 557 279 31 32 chrY 12831855 12832215 -11880864 + MLT2B1 LTR ERVL 110 418 -102 564 251 12 7 chrY 12832217 12832498 -11880581 + MLT2B1 LTR ERVL 267 418 -102 * 622 237 23 68 chrY 12832466 12832659 -11880420 + MLT2B1 LTR ERVL 267 449 -71 1694 166 7 4 chrY 12832659 12832967 -11880112 + AluSg SINE Alu 1 309 0 622 237 23 68 chrY 12832967 12833036 -11880043 + MLT2B1 LTR ERVL 449 520 0 264 317 43 30 chrY 12833207 12833371 -11879708 + L1MDa LINE L1 909 1074 -5466 436 229 126 60 chrY 12833395 12833606 -11879473 + L1MDa LINE L1 1214 1410 -5130 2151 130 0 25 chrY 12833606 12833922 -11879157 + AluSc SINE Alu 1 308 -1 436 229 126 60 chrY 12833922 12834147 -11878932 + L1MDa LINE L1 1410 1679 -4861 446 271 66 0 chrY 12834653 12834804 -11878275 - MLT1E LTR MaLR -432 161 1 372 122 37 0 chrY 12834821 12834903 -11878176 + (TCTA)n Simple_repeat Simple_repeat 4 88 0 720 130 5 49 chrY 12834932 12835117 -11877962 + (TCTA)n Simple_repeat Simple_repeat 3 179 0 413 207 17 22 chrY 12835177 12835356 -11877723 + (TCTA)n Simple_repeat Simple_repeat 3 180 0 2476 170 49 55 chrY 12835761 12836224 -11876855 - MER1A DNA MER1_type -2174 526 65 1637 204 16 0 chrY 12836224 12836528 -11876551 - AluSq SINE Alu -4 309 1 2476 170 49 55 chrY 12836528 12836593 -11876486 - MER1A DNA MER1_type -2635 65 1 937 277 127 36 chrY 12838245 12838664 -11874415 + MLT1C LTR MaLR 1 457 -10 309 315 33 11 chrY 12839183 12839275 -11873804 - L2 LINE L2 -38 3234 3141 1423 150 0 4 chrY 12839294 12839528 -11873551 + L1PB1 LINE L1 5910 6142 -9 27 0 0 0 chrY 12839528 12839555 -11873524 + AT_rich Low_complexity Low_complexity 1 27 0 308 373 65 11 chrY 12839659 12839844 -11873235 + MER91A DNA MER1_type 2 196 0 1829 174 16 0 chrY 12840041 12840346 -11872733 - AluSx SINE Alu -2 310 1 329 342 65 39 chrY 12840707 12841017 -11872062 - L1M4 LINE L1 -1842 4304 3987 1070 206 14 14 chrY 12841038 12841256 -11871823 - AluJb SINE Alu -7 305 88 28 48 0 0 chrY 12842709 12842751 -11870328 + AT_rich Low_complexity Low_complexity 1 42 0 207 105 53 0 chrY 12842833 12842890 -11870189 + (TA)n Simple_repeat Simple_repeat 2 61 0 1772 92 3 2 chrY 12842903 12843302 -11869777 + HERVL66 LTR ERVL 3846 4329 0 2621 115 10 5 chrY 12843302 12843702 -11869377 + LTR66 LTR ERVL 1 402 -208 452 92 0 0 chrY 12843707 12843772 -11869307 + LTR66 LTR ERVL 337 401 -209 586 89 18 62 chrY 12843773 12843885 -11869194 + LTR66 LTR ERVL 332 438 -172 5563 145 18 25 chrY 12843936 12844589 -11868490 + L1PA12 LINE L1 2033 2689 -4895 1644 180 13 39 chrY 12844589 12844900 -11868179 + AluSx SINE Alu 1 303 -9 189 0 0 0 chrY 12844901 12844922 -11868157 + (GA)n Simple_repeat Simple_repeat 2 22 0 5563 145 18 25 chrY 12844922 12845354 -11867725 + L1PA12 LINE L1 2688 3117 -4467 1038 194 0 0 chrY 12845639 12845809 -11867270 + AluSg/x SINE Alu 130 299 -11 1554 180 25 7 chrY 12847501 12847812 -11865267 + AluSg SINE Alu 11 310 0 1187 282 30 12 chrY 12847897 12848323 -11864756 + MLT1C LTR MaLR 34 467 0 918 180 16 122 chrY 12848806 12849051 -11864028 - AluSq SINE Alu -61 252 34 22 35 0 0 chrY 12849306 12849335 -11863744 + AT_rich Low_complexity Low_complexity 1 29 0 6853 48 0 0 chrY 12849721 12850780 -11862299 - L1PA5 LINE L1 0 6154 5072 7539 48 0 0 chrY 12850781 12851754 -11861325 + L1PA5 LINE L1 4112 5084 -1062 2676 26 0 0 chrY 12851837 12852142 -11860937 - AluY SINE Alu -6 305 1 180 77 0 0 chrY 12852152 12852178 -11860901 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 1188 223 0 98 chrY 12852180 12852498 -11860581 - AluJb SINE Alu -15 287 1 25 0 0 0 chrY 12852547 12852572 -11860507 + AT_rich Low_complexity Low_complexity 1 25 0 28 35 0 35 chrY 12853442 12853483 -11859596 + AT_rich Low_complexity Low_complexity 1 41 -14 1819 164 0 7 chrY 12853483 12853781 -11859298 - AluSg SINE Alu -13 297 2 28 35 0 35 chrY 12853781 12853796 -11859283 + AT_rich Low_complexity Low_complexity 41 55 0 1807 188 30 0 chrY 12854265 12854568 -11858511 - AluSx SINE Alu 0 312 1 72 40 0 0 chrY 12854640 12854740 -11858339 + AT_rich Low_complexity Low_complexity 1 100 0 295 156 0 26 chrY 12854774 12854851 -11858228 + L1MA10 LINE L1 6243 6317 -17 25 83 0 0 chrY 12854883 12854943 -11858136 + AT_rich Low_complexity Low_complexity 1 60 0 420 71 0 0 chrY 12854968 12855024 -11858055 + (TA)n Simple_repeat Simple_repeat 1 56 0 775 290 61 44 chrY 12855119 12855640 -11857439 + L1MEc LINE L1 229 758 -5638 340 24 49 49 chrY 12856994 12857076 -11856003 + (TA)n Simple_repeat Simple_repeat 1 82 0 272 243 101 23 chrY 12857116 12857250 -11855829 + LTR33A LTR ERVL 34 150 -373 1681 201 3 0 chrY 12857555 12857848 -11855231 - AluJb SINE Alu -18 294 1 2169 111 3 0 chrY 12858309 12858597 -11854482 + AluY SINE Alu 23 311 0 582 209 44 16 chrY 12859289 12859471 -11853608 - MER53 DNA DNA -2 187 1 880 73 0 15 chrY 12859666 12859802 -11853277 + (TCTA)n Simple_repeat Simple_repeat 2 135 0 204 243 0 0 chrY 12860234 12860308 -11852771 + T-rich Low_complexity Low_complexity 1 74 0 26 30 0 0 chrY 12860647 12860680 -11852399 + AT_rich Low_complexity Low_complexity 1 33 0 610 165 16 31 chrY 12860740 12860867 -11852212 - FLAM_C SINE Alu -13 130 6 430 313 127 55 chrY 12861421 12861837 -11851242 + L1M4 LINE L1 3638 4023 -2123 2276 93 0 6 chrY 12861837 12862148 -11850931 - AluY SINE Alu 0 311 3 430 313 127 55 chrY 12862148 12862789 -11850290 + L1M4 LINE L1 4023 4771 -1375 2651 13 0 3 chrY 12863142 12863440 -11849639 - AluY SINE Alu -14 297 1 2453 158 32 54 chrY 12864092 12864593 -11848486 - LTR2B LTR ERV1 0 490 1 37000 216 15 8 chrY 12864593 12872351 -11840728 - HERVE LTR ERV1 -1 7812 1 2795 143 29 30 chrY 12872351 12872842 -11840237 - LTR2B LTR ERV1 0 490 1 2104 114 7 29 chrY 12872961 12873268 -11839811 - AluY SINE Alu -11 300 1 1415 223 3 20 chrY 12874105 12874405 -11838674 - AluJb SINE Alu -9 303 9 424 29 43 29 chrY 12874939 12875008 -11838071 + (TTTTC)n Simple_repeat Simple_repeat 1 70 0 354 80 0 0 chrY 12875006 12875056 -11838023 + (TCCC)n Simple_repeat Simple_repeat 3 52 0 * 1857 171 26 0 chrY 12875056 12875400 -11837679 - AluSx SINE Alu 0 352 1 237 218 0 18 chrY 12875729 12875784 -11837295 + LTR33 LTR ERVL 446 499 -22 328 252 75 19 chrY 12876061 12876220 -11836859 - L1MC/D LINE L1 -2064 5744 5577 495 0 0 0 chrY 12876405 12876460 -11836619 + (TC)n Simple_repeat Simple_repeat 2 56 0 191 116 47 0 chrY 12877023 12877066 -11836013 + (CAAA)n Simple_repeat Simple_repeat 4 48 0 206 286 25 12 chrY 12877889 12878050 -11835029 + (TA)n Simple_repeat Simple_repeat 2 164 0 246 290 0 0 chrY 12878170 12878232 -11834847 + (TATG)n Simple_repeat Simple_repeat 2 63 0 190 0 67 0 chrY 12878272 12878302 -11834777 + (TA)n Simple_repeat Simple_repeat 2 33 0 471 259 58 76 chrY 12878333 12878557 -11834522 + MER58A DNA MER1_type 1 220 -4 40 37 0 0 chrY 12878646 12878700 -11834379 + AT_rich Low_complexity Low_complexity 1 54 0 24 32 0 0 chrY 12878821 12878852 -11834227 + AT_rich Low_complexity Low_complexity 1 31 0 314 350 88 52 chrY 12878868 12879515 -11833564 - L2 LINE L2 0 3313 2645 288 77 0 0 chrY 12879703 12879742 -11833337 + (TATG)n Simple_repeat Simple_repeat 2 40 0 1538 174 44 4 chrY 12879742 12880017 -11833062 - AluSx SINE Alu -26 286 1 406 319 95 58 chrY 12880108 12880434 -11832645 - L1ME4a LINE L1 -218 5903 5566 23 0 0 0 chrY 12880804 12880827 -11832252 + AT_rich Low_complexity Low_complexity 1 23 0 830 262 4 22 chrY 12880992 12881221 -11831858 - AluJb SINE Alu -24 288 64 270 259 146 10 chrY 12881243 12881446 -11831633 + L1MEc LINE L1 1533 1740 -910 23 78 0 0 chrY 12881937 12881988 -11831091 + AT_rich Low_complexity Low_complexity 1 51 0 321 328 23 0 chrY 12882033 12882161 -11830918 + MLT1G1 LTR MaLR 1 131 -464 5702 110 11 2 chrY 12882693 12883336 -11829743 - L1PA7 LINE L1 -11 6143 5485 2351 107 3 0 chrY 12883336 12883645 -11829434 - AluY SINE Alu -1 310 1 5702 110 11 2 chrY 12883645 12884211 -11828868 - L1PA7 LINE L1 -669 5485 4925 1655 200 3 3 chrY 12884235 12884540 -11828539 + AluSx SINE Alu 1 305 -7 1451 219 15 44 chrY 12884650 12885039 -11828040 - L1MB3 LINE L1 -467 5716 5339 * 1589 221 18 50 chrY 12885038 12885476 -11827603 + L1MB3 LINE L1 5731 6154 -29 1588 188 41 3 chrY 12885478 12885770 -11827309 - AluSx SINE Alu -7 305 3 21 0 0 0 chrY 12885781 12885802 -11827277 + AT_rich Low_complexity Low_complexity 1 21 0 218 228 16 39 chrY 12886051 12886178 -11826901 + (TATAA)n Simple_repeat Simple_repeat 5 128 0 * 273 183 100 17 chrY 12886118 12886238 -11826841 + (TTATA)n Simple_repeat Simple_repeat 2 131 0 313 280 67 38 chrY 12886287 12886591 -11826488 + L1ME LINE L1 5429 5748 -414 1517 208 10 7 chrY 12886966 12887260 -11825819 + AluJo SINE Alu 1 295 -17 299 311 0 0 chrY 12887380 12887502 -11825577 + L1PBa LINE L1 105 226 -6637 1101 255 107 32 chrY 12887738 12888205 -11824874 - MLT1D LTR MaLR -1 504 3 281 229 42 25 chrY 12888383 12888501 -11824578 - L1PBa LINE L1 -6639 224 105 216 333 69 29 chrY 12889468 12889714 -11823365 + L2 LINE L2 1866 2121 -1193 194 311 27 68 chrY 12890040 12890114 -11822965 + L2 LINE L2 3114 3184 -88 1098 257 93 46 chrY 12890813 12891295 -11821784 - MLT1D LTR MaLR 0 505 1 21 0 0 0 chrY 12891811 12891832 -11821247 + AT_rich Low_complexity Low_complexity 1 21 0 222 143 0 0 chrY 12892886 12892935 -11820144 + (TG)n Simple_repeat Simple_repeat 2 50 0 551 299 45 32 chrY 12893247 12893468 -11819611 - MER58A DNA MER1_type 0 224 1 1485 212 17 17 chrY 12893539 12893841 -11819238 - AluJo SINE Alu -10 302 1 3047 167 21 42 chrY 12894739 12894874 -11818205 - L1PB4 LINE L1 -1 6155 6019 1633 201 3 16 chrY 12894874 12895177 -11817902 - AluSx SINE Alu -13 299 1 3047 167 21 42 chrY 12895177 12895550 -11817529 - L1PB4 LINE L1 -137 6019 5662 1519 181 10 31 chrY 12895550 12895843 -11817236 - AluSx SINE Alu -25 287 1 3047 167 21 42 chrY 12895843 12895998 -11817081 - L1PB4 LINE L1 -494 5662 5505 2039 145 0 0 chrY 12896232 12896528 -11816551 - AluSq SINE Alu -9 304 9 1427 211 0 4 chrY 12896554 12896814 -11816265 - AluJo SINE Alu -30 282 24 25 31 0 0 chrY 12896850 12896882 -11816197 + AT_rich Low_complexity Low_complexity 1 32 0 578 343 111 14 chrY 12896941 12897285 -11815794 + L2 LINE L2 2601 2977 -337 234 114 0 0 chrY 12897381 12897425 -11815654 - L1PA4 LINE L1 0 6155 6112 * 448 67 0 2 chrY 12897412 12897476 -11815603 + L1PA5 LINE L1 5797 5859 -295 219 114 0 0 chrY 12897894 12897929 -11815150 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 1112 258 50 65 chrY 12897940 12898068 -11815011 + MLT1D LTR MaLR 31 159 -346 1784 166 13 19 chrY 12898068 12898375 -11814704 - AluSx SINE Alu -5 307 3 1112 258 50 65 chrY 12898375 12898472 -11814607 + MLT1D LTR MaLR 159 256 -249 2300 137 19 13 chrY 12898472 12898845 -11814234 - THE1C LTR MaLR 0 375 1 1112 258 50 65 chrY 12898845 12899098 -11813981 + MLT1D LTR MaLR 256 503 -2 1249 188 115 8 chrY 12899107 12899368 -11813711 - AluJo SINE Alu -21 291 3 1784 183 0 0 chrY 12899940 12900224 -11812855 - AluSx SINE Alu -24 288 5 1571 214 35 6 chrY 12900316 12900755 -11812324 - MLT2B1 LTR ERVL -16 499 1 903 263 10 0 chrY 12900983 12901188 -11811891 - MER20 DNA MER1_type -5 214 8 323 330 0 0 chrY 12901481 12901581 -11811498 + GA-rich Low_complexity Low_complexity 1 100 0 1920 174 0 0 chrY 12902380 12902674 -11810405 - AluSx SINE Alu -18 294 1 1087 225 25 54 chrY 12903619 12903934 -11809145 + MLT2C1 LTR ERVL 1 306 -91 339 96 0 0 chrY 12903995 12904047 -11809032 + (TGGA)n Simple_repeat Simple_repeat 4 55 0 483 179 31 28 chrY 12904060 12904560 -11808519 + (TAGA)n Simple_repeat Simple_repeat 1 501 0 194 184 9 55 chrY 12904572 12904681 -11808398 + (TAGA)n Simple_repeat Simple_repeat 4 107 0 227 91 13 78 chrY 12904753 12904830 -11808249 + (TAGA)n Simple_repeat Simple_repeat 2 73 0 249 154 0 39 chrY 12904831 12904883 -11808196 + MLT2C1 LTR ERVL 465 514 -6 925 127 0 83 chrY 12905504 12905589 -11807490 - MER9 LTR ERVK 0 511 447 1652 160 56 0 chrY 12905589 12905876 -11807203 + AluY SINE Alu 1 303 -8 925 127 0 83 chrY 12905876 12905971 -11807108 - MER9 LTR ERVK -64 447 346 11619 106 8 13 chrY 12905971 12907639 -11805440 - HERVK9 LTR ERVK -656 5260 3601 * 14903 122 34 52 chrY 12907636 12909284 -11803795 - HERVK9 LTR ERVK -3433 2483 831 228 200 0 83 chrY 12909284 12909344 -11803735 - MER5B DNA MER1_type -69 109 55 14903 122 34 52 chrY 12909344 12910162 -11802917 - HERVK9 LTR ERVK -5085 831 1 3121 121 53 6 chrY 12910162 12910650 -11802429 - MER9 LTR ERVK 0 511 1 1685 157 3 24 chrY 12910942 12911229 -11801850 + AluSq SINE Alu 1 281 -32 39265 79 4 10 chrY 12911245 12917423 -11795656 + L1PA5 LINE L1 3 6147 -7 326 119 0 15 chrY 12917442 12917509 -11795570 + (TAAA)n Simple_repeat Simple_repeat 2 67 0 1865 148 10 17 chrY 12917908 12918206 -11794873 + AluSx SINE Alu 3 298 -14 239 228 69 50 chrY 12918237 12918338 -11794741 + LTR19C LTR ERV1 677 779 0 1025 201 0 38 chrY 12918338 12918547 -11794532 - AluJo SINE Alu -111 201 1 664 219 76 101 chrY 12918568 12918856 -11794223 + MLT1C LTR MaLR 53 333 -134 1189 228 0 0 chrY 12919845 12920091 -11792988 - L1MB3 LINE L1 -224 5959 5714 870 186 31 16 chrY 12920092 12920286 -11792793 + L1 LINE L1 4954 5150 -996 394 311 50 19 chrY 12920436 12920597 -11792482 - Zaphod DNA AcHobo -3762 269 104 641 36 12 0 chrY 12920605 12920689 -11792390 + (GA)n Simple_repeat Simple_repeat 1 85 0 324 102 0 0 chrY 12921111 12921160 -11791919 + (CA)n Simple_repeat Simple_repeat 2 50 0 1580 174 8 4 chrY 12921168 12921432 -11791647 - AluSx SINE Alu -26 286 22 1595 215 129 70 chrY 12921504 12922199 -11790880 - LTR48 LTR ERV1 0 787 39 1664 196 0 6 chrY 12922199 12922510 -11790569 - AluSx SINE Alu -3 309 1 1595 215 129 70 chrY 12922510 12922552 -11790527 - LTR48 LTR ERV1 -748 39 1 22 70 0 0 chrY 12923102 12923145 -11789934 + AT_rich Low_complexity Low_complexity 1 43 0 1289 177 107 27 chrY 12923829 12924157 -11788922 + THE1C LTR MaLR 1 354 -21 395 163 0 0 chrY 12924288 12924368 -11788711 + L1MA3 LINE L1 6226 6305 0 3436 149 25 20 chrY 12925570 12926175 -11786904 + MER4B LTR ERV1 1 608 -2 860 257 25 0 chrY 12926363 12926565 -11786514 - MLT1D LTR MaLR -7 498 292 509 251 10 96 chrY 12926603 12926716 -11786363 - MLT1D LTR MaLR -321 184 94 2945 152 10 6 chrY 12926716 12927228 -11785851 + L1PA11 LINE L1 5658 6171 -3 509 251 10 96 chrY 12927228 12927313 -11785766 - MLT1D LTR MaLR -411 94 3 1918 174 22 33 chrY 12928007 12928562 -11784517 - L1MA5A LINE L1 0 6297 5781 393 280 11 0 chrY 12928728 12928821 -11784258 - MER5A DNA MER1_type -83 106 13 2763 188 55 2 chrY 12929651 12930251 -11782828 + MER41B LTR ERV1 4 635 0 1233 210 93 67 chrY 12930251 12930637 -11782442 - MLT1C LTR MaLR -28 439 44 231 182 0 0 chrY 12930690 12930734 -11782345 - MLT1C LTR MaLR -422 45 2 1297 240 76 78 chrY 12930744 12931298 -11781781 - MLT2B3 LTR ERVL -1 553 1 25 51 0 0 chrY 12931554 12931593 -11781486 + AT_rich Low_complexity Low_complexity 1 39 0 25 0 0 0 chrY 12931916 12931941 -11781138 + AT_rich Low_complexity Low_complexity 1 25 0 200 373 57 2 chrY 12932048 12932165 -11780914 + MIR SINE MIR 36 158 -75 1455 213 7 7 chrY 12932900 12933233 -11779846 + AluSx SINE Alu 1 333 0 591 275 50 20 chrY 12933254 12933454 -11779625 - MIR SINE MIR -33 229 24 25 31 0 0 chrY 12933826 12933858 -11779221 + AT_rich Low_complexity Low_complexity 1 32 0 7236 112 5 5 chrY 12933858 12935764 -11777315 + L1PA7 LINE L1 4254 6150 -4 30 45 0 0 chrY 12935778 12935822 -11777257 + AT_rich Low_complexity Low_complexity 1 44 0 1604 191 80 30 chrY 12935918 12936316 -11776763 - L1MA4 LINE L1 -5 6295 5878 1953 133 11 7 chrY 12936660 12936946 -11776133 - AluSq SINE Alu -21 292 6 507 293 34 29 chrY 12937093 12937301 -11775778 - MER3 DNA MER1_type 0 209 1 216 86 0 0 chrY 12937354 12937389 -11775690 + (CA)n Simple_repeat Simple_repeat 2 36 0 3513 166 26 42 chrY 12938834 12939563 -11773516 - LTR62 LTR ERVK -2 717 1 1798 167 0 10 chrY 12941507 12941812 -11771267 + AluJb SINE Alu 1 302 -10 1834 161 0 13 chrY 12942660 12942964 -11770115 + AluY SINE Alu 1 300 -11 409 317 2 15 chrY 12943334 12943473 -11769606 - MER5B DNA MER1_type -1 177 54 222 318 45 27 chrY 12943725 12943835 -11769244 - MIR SINE MIR -54 208 97 225 204 0 0 chrY 12943855 12943899 -11769180 - MLT2B1 LTR ERVL 0 464 421 1405 214 3 24 chrY 12943981 12944276 -11768803 + AluJb SINE Alu 1 289 -23 1643 242 73 14 chrY 12944279 12944705 -11768374 - MLT2B1 LTR ERVL -69 451 1 330 115 0 0 chrY 12945493 12945554 -11767525 + (TA)n Simple_repeat Simple_repeat 2 62 0 246 336 45 22 chrY 12945825 12945959 -11767120 - MIR3 SINE MIR -60 148 12 1881 137 20 10 chrY 12946015 12946308 -11766771 - AluSc SINE Alu -13 296 1 216 111 0 0 chrY 12946448 12946484 -11766595 + (CA)n Simple_repeat Simple_repeat 1 36 0 680 264 42 112 chrY 12946484 12946994 -11766085 + L1ME1 LINE L1 5606 6076 -90 23 33 0 0 chrY 12947871 12947901 -11765178 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chrY 12948377 12948406 -11764673 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chrY 12948919 12948949 -11764130 + AT_rich Low_complexity Low_complexity 1 30 0 1528 181 36 30 chrY 12949006 12949310 -11763769 - AluSx SINE Alu -6 306 1 197 65 32 0 chrY 12950103 12950134 -11762945 + (GAAAA)n Simple_repeat Simple_repeat 5 36 0 342 290 55 14 chrY 12951718 12951863 -11761216 - MLT1B LTR MaLR -193 197 47 924 182 0 12 chrY 12952174 12952339 -11760740 + FRAM SINE Alu 5 167 -9 675 252 0 0 chrY 12952342 12952469 -11760610 + FLAM_A SINE Alu 1 127 -6 1496 228 3 7 chrY 12952900 12953198 -11759881 - AluJo SINE Alu -11 301 5 1954 197 68 27 chrY 12953387 12953829 -11759250 - LTR2B LTR ERV1 0 490 31 298 188 35 0 chrY 12953935 12954000 -11759079 + AluSp SINE Alu 153 210 -93 2026 119 20 10 chrY 12954569 12954871 -11758208 + AluY SINE Alu 1 305 -6 1381 210 42 0 chrY 12954889 12955175 -11757904 + AluJo SINE Alu 1 298 -14 1615 201 132 5 chrY 12956590 12956968 -11756111 + MSTA LTR MaLR 1 426 -2 1777 129 37 7 chrY 12957157 12957476 -11755603 + AluY SINE Alu 1 327 0 297 75 0 0 chrY 12957577 12957617 -11755462 + (CATA)n Simple_repeat Simple_repeat 2 41 0 219 114 0 0 chrY 12957622 12957657 -11755422 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 436 199 23 11 chrY 12957684 12957860 -11755219 + (TAGA)n Simple_repeat Simple_repeat 1 178 0 355 178 46 23 chrY 12957908 12958082 -11754997 + (TAGA)n Simple_repeat Simple_repeat 3 180 0 300 131 47 19 chrY 12958190 12958297 -11754782 + (TAGA)n Simple_repeat Simple_repeat 1 110 0 1833 195 14 0 chrY 12959306 12959665 -11753414 - MLT1A1 LTR MaLR 0 365 2 1270 256 8 17 chrY 12959681 12960033 -11753046 + MLT2C2 LTR ERVL 3 351 -113 8181 111 13 2 chrY 12960037 12962062 -11751017 - L1PA7 LINE L1 0 6469 4437 1079 78 0 0 chrY 12962062 12962204 -11750875 + AluY SINE Alu 170 311 0 19712 144 29 12 chrY 12962204 12965884 -11747195 - L1PA7 LINE L1 -2017 4444 698 312 297 81 0 chrY 12965884 12965995 -11747084 + MLT2C2 LTR ERVL 345 464 0 580 217 101 72 chrY 12966183 12966321 -11746758 - MLT2B1 LTR ERVL -90 430 261 564 217 17 10 chrY 12966349 12966653 -11746426 + (TA)n Simple_repeat Simple_repeat 1 306 0 242 208 19 26 chrY 12966697 12966851 -11746228 + (TA)n Simple_repeat Simple_repeat 1 153 0 23 0 0 0 chrY 12968920 12968943 -11744136 + AT_rich Low_complexity Low_complexity 1 23 0 4593 143 14 75 chrY 12968943 12969558 -11743521 - L1PA16 LINE L1 -4 6162 5633 1907 163 0 3 chrY 12969558 12969864 -11743215 - AluSg SINE Alu -5 305 1 4593 143 14 75 chrY 12969864 12970297 -11742782 - L1PA16 LINE L1 -533 5633 5175 26 30 0 0 chrY 12970698 12970731 -11742348 + AT_rich Low_complexity Low_complexity 1 33 0 302 307 64 41 chrY 12970922 12971140 -11741939 - HAL1b LINE L1 -432 916 694 3625 182 21 34 chrY 12971204 12971550 -11741529 - L1MA4 LINE L1 -9 6291 5942 1976 160 3 3 chrY 12971550 12971863 -11741216 - AluSq SINE Alu 0 313 1 3625 182 21 34 chrY 12971863 12972322 -11740757 - L1MA4 LINE L1 -358 5942 5496 2044 147 0 0 chrY 12972340 12972633 -11740446 + AluSx SINE Alu 1 293 -19 2565 13 0 27 chrY 12972977 12973319 -11739760 - AluYa5 SINE Alu 0 311 1 588 268 111 100 chrY 12973524 12973738 -11739341 + Charlie2b DNA MER1_type 320 530 -2252 1962 160 0 16 chrY 12973738 12974056 -11739023 - AluSq SINE Alu 0 313 1 588 268 111 100 chrY 12974056 12974526 -11738553 + Charlie2b DNA MER1_type 530 1017 -1765 1830 126 0 4 chrY 12974526 12974788 -11738291 + AluSg SINE Alu 34 294 -16 588 268 111 100 chrY 12974788 12974902 -11738177 + Charlie2b DNA MER1_type 1017 1128 -1654 4931 147 15 62 chrY 12975177 12981531 -11731548 - L1PA7 LINE L1 -20 6134 2 28 61 0 0 chrY 12981899 12981948 -11731131 + AT_rich Low_complexity Low_complexity 1 49 0 25 0 0 0 chrY 12982065 12982090 -11730989 + AT_rich Low_complexity Low_complexity 1 25 0 580 90 0 0 chrY 12982679 12982757 -11730322 - MADE1 DNA Mariner 0 80 3 260 352 75 53 chrY 12982997 12983355 -11729724 - L2 LINE L2 -2 3311 2946 1694 161 30 7 chrY 12983502 12983800 -11729279 - AluSx SINE Alu -6 306 2 28 0 0 0 chrY 12984632 12984660 -11728419 + AT_rich Low_complexity Low_complexity 1 28 0 7090 53 2 0 chrY 12985002 12986210 -11726869 - L1PA5 LINE L1 0 6154 4942 330 98 0 0 chrY 12986243 12986294 -11726785 + (TG)n Simple_repeat Simple_repeat 2 52 0 773 189 34 0 chrY 12987021 12987169 -11725910 - L1MA2 LINE L1 -22 6282 6130 287 316 35 115 chrY 12987240 12987528 -11725551 + L2 LINE L2 953 1217 -2097 862 225 16 11 chrY 12987593 12987784 -11725295 - L1PB4 LINE L1 -7 6149 5958 764 99 35 7 chrY 12987784 12987925 -11725154 + GA-rich Low_complexity Low_complexity 1 145 0 206 222 32 0 chrY 12987942 12988005 -11725074 + GA-rich Low_complexity Low_complexity 4 68 0 663 187 6 54 chrY 12988008 12988174 -11724905 - L1PB4 LINE L1 -234 5922 5765 907 86 14 0 chrY 12988174 12988313 -11724766 + (TTCC)n Simple_repeat Simple_repeat 1 141 0 445 316 0 7 chrY 12988313 12988631 -11724448 - AluJb SINE Alu 0 312 153 4251 202 33 28 chrY 12988672 12990048 -11723031 - L1PA15 LINE L1 -13 6152 4770 297 203 0 0 chrY 12990048 12990107 -11722972 - L1 LINE L1 -1532 4614 4556 * 39310 83 2 7 chrY 12990099 12996267 -11716812 + L1PA5 LINE L1 12 6149 -5 2682 227 27 17 chrY 12996264 12996972 -11716107 - L1PA15 LINE L1 -1570 4576 3862 * 283 371 84 31 chrY 12997062 12997512 -11715567 + L2 LINE L2 1364 1837 -1477 406 186 62 7 chrY 12999234 12999396 -11713683 + (TCTA)n Simple_repeat Simple_repeat 1 153 -609 2036 139 3 3 chrY 12999396 12999699 -11713380 - AluSp SINE Alu -10 303 1 406 186 62 7 chrY 12999699 12999957 -11713122 + (TCTA)n Simple_repeat Simple_repeat 153 762 0 444 147 60 0 chrY 13000010 13000160 -11712919 + (TCTA)n Simple_repeat Simple_repeat 4 162 0 192 77 0 0 chrY 13000225 13000251 -11712828 + (TC)n Simple_repeat Simple_repeat 2 27 0 238 277 10 30 chrY 13000682 13000783 -11712296 + T-rich Low_complexity Low_complexity 2 100 0 29 84 0 0 chrY 13002196 13002267 -11710812 + AT_rich Low_complexity Low_complexity 1 71 0 573 152 6 38 chrY 13002817 13002975 -11710104 + CT-rich Low_complexity Low_complexity 4 156 0 445 178 35 29 chrY 13003027 13003201 -11709878 + CT-rich Low_complexity Low_complexity 1 175 0 1140 217 107 11 chrY 13003223 13003486 -11709593 - AluJo SINE Alu -14 288 1 405 78 13 26 chrY 13004150 13004227 -11708852 + (TCTA)n Simple_repeat Simple_repeat 3 78 0 2829 193 8 8 chrY 13004961 13005557 -11707522 - L1MA4 LINE L1 -5 6295 5700 828 173 3 15 chrY 13005734 13005919 -11707160 - L1M3 LINE L1 -430 5738 5555 1141 170 52 134 chrY 13006312 13006820 -11706259 + AluSx SINE Alu 1 481 0 245 29 0 29 chrY 13006821 13006856 -11706223 + (GGGA)n Simple_repeat Simple_repeat 3 36 0 261 0 0 0 chrY 13006862 13006891 -11706188 + (CAAG)n Simple_repeat Simple_repeat 2 30 0 2349 70 0 10 chrY 13007045 13007345 -11705734 - AluY SINE Alu -14 297 1 2007 99 10 40 chrY 13007347 13007650 -11705429 - AluY SINE Alu -17 294 1 337 158 0 0 chrY 13007682 13007739 -11705340 - MLT1B LTR MaLR -16 374 318 1791 171 10 64 chrY 13007826 13008047 -11705032 - MLT1B LTR MaLR -2 388 157 1482 206 3 26 chrY 13008047 13008357 -11704722 - AluJb SINE Alu -9 303 1 2390 57 0 0 chrY 13008361 13008760 -11704319 - AluY SINE Alu 0 399 1 1791 171 10 64 chrY 13008760 13008941 -11704138 - MLT1B LTR MaLR -236 154 2 24 77 0 0 chrY 13009088 13009140 -11703939 + AT_rich Low_complexity Low_complexity 1 52 0 572 167 17 25 chrY 13009198 13009559 -11703520 + (TCTA)n Simple_repeat Simple_repeat 1 358 0 622 153 32 14 chrY 13009583 13009864 -11703215 + (TCTA)n Simple_repeat Simple_repeat 1 286 0 1167 254 46 57 chrY 13009865 13010361 -11702718 + L1MA9 LINE L1 5785 6275 -37 23 54 0 0 chrY 13010361 13010398 -11702681 + AT_rich Low_complexity Low_complexity 1 37 0 617 191 40 16 chrY 13010644 13010770 -11702309 + FLAM_C SINE Alu 4 132 -11 1244 233 4 22 chrY 13011749 13012020 -11701059 + AluJo SINE Alu 1 266 -46 1175 144 0 17 chrY 13012755 13012935 -11700144 + AluSc SINE Alu 101 277 -32 526 213 37 59 chrY 13013644 13013780 -11699299 - FLAM_C SINE Alu 0 133 1 218 260 13 13 chrY 13014110 13014187 -11698892 + (CATA)n Simple_repeat Simple_repeat 1 77 0 188 364 20 10 chrY 13014570 13014669 -11698410 + MIR SINE MIR 48 147 -115 180 0 0 0 chrY 13014776 13014796 -11698283 + (GA)n Simple_repeat Simple_repeat 1 20 0 1140 189 62 39 chrY 13015895 13016054 -11697025 + L1MA9 LINE L1 5996 6150 -162 195 100 0 0 chrY 13016054 13016084 -11696995 + (CA)n Simple_repeat Simple_repeat 1 30 0 1140 189 62 39 chrY 13016084 13016230 -11696849 + L1MA9 LINE L1 6150 6308 -4 11425 149 9 28 chrY 13016590 13019164 -11693915 + L1P3 LINE L1 11 2588 -3873 792 287 85 21 chrY 13019522 13019898 -11693181 + L1MC4 LINE L1 6679 7078 -964 202 257 19 0 chrY 13019906 13020011 -11693068 + (TA)n Simple_repeat Simple_repeat 1 107 0 2871 137 8 25 chrY 13020124 13020598 -11692481 + MER1A DNA MER1_type 64 529 0 2347 168 5 2 chrY 13020662 13021068 -11692011 - L1PA15 LINE L1 -2 6163 5757 5127 116 19 0 chrY 13021093 13021851 -11691228 - L1PA11 LINE L1 -2 6172 5401 310 342 117 8 chrY 13021851 13022091 -11690988 + L1MC4 LINE L1 7254 7519 -523 2950 174 25 0 chrY 13022194 13022554 -11690525 + MER1A DNA MER1_type 31 408 -2294 180 0 0 0 chrY 13022554 13022574 -11690505 + (TAA)n Simple_repeat Simple_repeat 1 20 0 2950 174 25 0 chrY 13022574 13022700 -11690379 + MER1A DNA MER1_type 408 529 0 257 344 88 33 chrY 13023120 13023620 -11689459 - L2 LINE L2 -86 3227 2702 1003 169 176 72 chrY 13023692 13023999 -11689080 - MER44D DNA MER2_type 0 609 1 945 242 6 92 chrY 13024022 13024217 -11688862 - AluJb SINE Alu -2 300 143 387 105 0 0 chrY 13024217 13024274 -11688805 + (TG)n Simple_repeat Simple_repeat 2 58 0 945 242 6 92 chrY 13024274 13024405 -11688674 - AluJb SINE Alu -159 143 2 994 142 69 49 chrY 13026843 13027047 -11686032 - THE1B LTR MaLR 0 364 157 550 144 21 10 chrY 13027180 13027277 -11685802 + MER4A LTR ERV1 1 98 -566 358 62 21 0 chrY 13027277 13027325 -11685754 + MER4A LTR ERV1 261 309 -355 2065 140 23 9 chrY 13027325 13027675 -11685404 - THE1A LTR MaLR 0 355 1 1747 156 3 30 chrY 13027684 13027985 -11685094 + MER4A LTR ERV1 372 664 0 399 113 38 0 chrY 13028759 13028839 -11684240 + CT-rich Low_complexity Low_complexity 2 84 0 304 177 13 13 chrY 13028926 13029005 -11684074 + CT-rich Low_complexity Low_complexity 2 80 0 188 67 33 0 chrY 13029910 13029940 -11683139 + (TAGA)n Simple_repeat Simple_repeat 1 31 0 218 271 0 43 chrY 13029941 13030011 -11683068 + (TGGA)n Simple_repeat Simple_repeat 1 67 0 654 203 8 8 chrY 13030011 13030268 -11682811 + (TAGA)n Simple_repeat Simple_repeat 1 257 0 219 69 0 0 chrY 13030314 13030343 -11682736 + (TA)n Simple_repeat Simple_repeat 2 30 0 * 243 0 0 0 chrY 13030342 13030369 -11682710 + (CA)n Simple_repeat Simple_repeat 2 28 0 238 258 30 0 chrY 13030907 13030973 -11682106 + L1MA9 LINE L1 6015 6082 -230 206 219 62 51 chrY 13031039 13031217 -11681862 + (CATTA)n Simple_repeat Simple_repeat 1 180 0 313 249 34 28 chrY 13031455 13031632 -11681447 + (TTATA)n Simple_repeat Simple_repeat 3 180 0 210 236 57 21 chrY 13031758 13031898 -11681181 + (TTATA)n Simple_repeat Simple_repeat 5 149 0 502 195 0 0 chrY 13031951 13032038 -11681041 + MER58A DNA MER1_type 35 121 0 555 171 63 0 chrY 13032039 13032150 -11680929 + MER57A LTR ERV1 1 118 -285 473 132 0 99 chrY 13032152 13032243 -11680836 - AluJo SINE Alu -11 301 220 * 798 226 0 24 chrY 13032236 13032404 -11680675 - AluJo SINE Alu -148 164 1 799 220 47 0 chrY 13032417 13032608 -11680471 + MER57A LTR ERV1 203 402 -1 377 258 22 0 chrY 13032609 13032698 -11680381 + MER58A DNA MER1_type 119 209 -15 331 256 162 104 chrY 13034352 13034499 -11678580 + MLT1H LTR MaLR 1 138 -411 2886 162 39 12 chrY 13034499 13035012 -11678067 + MER1A DNA MER1_type 1 527 0 331 256 162 104 chrY 13035012 13035173 -11677906 + MLT1H LTR MaLR 138 327 -222 1017 208 0 5 chrY 13035359 13035561 -11677518 + MLT2B1 LTR ERVL 1 201 -319 3889 155 29 12 chrY 13035563 13036222 -11676857 + LTR8 LTR ERV1 1 670 -21 651 255 74 11 chrY 13036255 13036452 -11676627 + MLT2B2 LTR ERVL 201 414 -106 467 218 0 0 chrY 13036453 13036540 -11676539 - AluJ/FLAM SINE Alu -223 89 3 249 267 13 0 chrY 13036572 13036647 -11676432 - MER58A DNA MER1_type 0 134 59 551 285 117 36 chrY 13037104 13037413 -11675666 - L1MEc LINE L1 -5952 444 111 3637 162 72 32 chrY 13037466 13038206 -11674873 + MER4E LTR ERV1 1 769 -10 3136 155 22 2 chrY 13038641 13039184 -11673895 - MER41A LTR ERV1 0 554 1 1463 192 13 45 chrY 13039342 13039650 -11673429 - AluJo SINE Alu -14 298 1 2448 72 0 0 chrY 13039864 13040168 -11672911 + AluY SINE Alu 4 307 -4 567 224 136 0 chrY 13040241 13040388 -11672691 + LTR1B LTR ERV1 660 826 0 * 881 206 19 33 chrY 13040388 13040592 -11672487 - MER20 DNA MER1_type -17 202 2 381 43 0 0 chrY 13040761 13040808 -11672271 + (TTCA)n Simple_repeat Simple_repeat 3 49 0 1533 196 4 0 chrY 13040822 13041097 -11671982 - AluJb SINE Alu -30 282 7 315 238 98 91 chrY 13041146 13041450 -11671629 - L1MC5 LINE L1 -219 7742 7429 1959 149 3 0 chrY 13041450 13041779 -11671300 - AluSg SINE Alu 0 330 1 315 238 98 91 chrY 13041779 13042011 -11671068 - L1MC5 LINE L1 -532 7429 7200 687 153 0 0 chrY 13042151 13042249 -11670830 - THE1C LTR MaLR -277 98 1 251 192 0 19 chrY 13042250 13042302 -11670777 - MLT1A2 LTR MaLR -323 51 1 2557 180 39 34 chrY 13042591 13042754 -11670325 - LTR24C LTR ERV1 0 594 433 2384 100 0 0 chrY 13042754 13043065 -11670014 + AluY SINE Alu 1 311 0 2557 180 39 34 chrY 13043065 13043493 -11669586 - LTR24C LTR ERV1 -161 433 36 1707 162 0 4 chrY 13043493 13043784 -11669295 + AluSx SINE Alu 19 308 0 2557 180 39 34 chrY 13043784 13043816 -11669263 - LTR24C LTR ERV1 -558 36 6 2009 68 8 0 chrY 13044145 13044411 -11668668 + L1PA4 LINE L1 5888 6155 0 1971 107 0 77 chrY 13044607 13044943 -11668136 + AluY SINE Alu 1 310 -1 1207 198 8 36 chrY 13044949 13045201 -11667878 + AluSx SINE Alu 45 289 -23 23 0 0 0 chrY 13045224 13045247 -11667832 + AT_rich Low_complexity Low_complexity 1 23 0 1895 184 41 23 chrY 13045612 13045921 -11667158 + MSTB1 LTR MaLR 1 320 -112 3968 178 14 36 chrY 13045921 13046724 -11666355 - LTR1 LTR ERV1 0 785 1 1895 184 41 23 chrY 13046724 13046801 -11666278 + MSTB1 LTR MaLR 320 394 -38 1324 205 16 19 chrY 13046802 13047060 -11666019 + AluSx SINE Alu 1 257 -55 6174 97 15 0 chrY 13047713 13049070 -11664009 - L1PA7 LINE L1 -324 5830 4461 26 30 0 0 chrY 13049080 13049113 -11663966 + AT_rich Low_complexity Low_complexity 1 33 0 27 0 0 0 chrY 13049371 13049398 -11663681 + AT_rich Low_complexity Low_complexity 1 27 0 337 303 122 63 chrY 13049921 13050380 -11662699 + L1M4 LINE L1 2732 3217 -2929 234 252 135 0 chrY 13050522 13050633 -11662446 + L1M4 LINE L1 3362 3487 -2659 246 337 77 12 chrY 13050697 13050866 -11662213 + L2 LINE L2 2714 2893 -421 469 209 36 0 chrY 13050932 13051071 -11662008 - L1MA7 LINE L1 -1 6290 6147 183 323 108 0 chrY 13051071 13051164 -11661915 + L2 LINE L2 2932 3034 -279 1578 171 43 0 chrY 13051917 13052198 -11660881 - AluSx SINE Alu -19 293 1 24 53 0 0 chrY 13052926 13052964 -11660115 + AT_rich Low_complexity Low_complexity 1 38 0 1591 188 0 28 chrY 13053193 13053327 -11659752 + AluSg SINE Alu 1 137 -173 2003 111 3 7 chrY 13053327 13053616 -11659463 + AluY SINE Alu 1 288 -23 243 0 0 0 chrY 13053619 13053646 -11659433 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1591 188 0 28 chrY 13053646 13053794 -11659285 + AluSg SINE Alu 139 279 -31 666 25 0 0 chrY 13053796 13053876 -11659203 + (CAATA)n Simple_repeat Simple_repeat 2 81 0 22 35 0 0 chrY 13053963 13053992 -11659087 + AT_rich Low_complexity Low_complexity 1 29 0 197 207 0 17 chrY 13055055 13055113 -11657966 + CT-rich Low_complexity Low_complexity 5 61 0 208 233 0 0 chrY 13056437 13056480 -11656599 + (CA)n Simple_repeat Simple_repeat 2 44 0 1507 208 19 10 chrY 13056636 13056944 -11656135 + AluSx SINE Alu 1 311 -1 493 222 15 0 chrY 13056945 13057080 -11655999 + GA-rich Low_complexity Low_complexity 1 137 0 294 191 29 15 chrY 13057085 13057153 -11655926 + A-rich Low_complexity Low_complexity 4 72 0 231 173 0 0 chrY 13057155 13057207 -11655872 + GA-rich Low_complexity Low_complexity 3 54 0 680 180 0 0 chrY 13058424 13058535 -11654544 - FLAM_A SINE Alu -22 120 10 500 265 125 19 chrY 13058548 13058869 -11654210 - L1M4 LINE L1 -1387 4759 4405 298 271 53 48 chrY 13058946 13059149 -11653930 - L1M4 LINE L1 -2101 4045 3842 39 80 0 0 chrY 13059233 13059321 -11653758 + AT_rich Low_complexity Low_complexity 1 88 0 3511 85 45 0 chrY 13059403 13059872 -11653207 + LTR2B LTR ERV1 1 490 0 2404 141 5 11 chrY 13059872 13060254 -11652825 + Harlequin LTR ERV1 1 380 -6516 * 36294 238 13 11 chrY 13060249 13060529 -11652550 + HERVE LTR ERV1 261 539 -7274 377 20 0 20 chrY 13060529 13060580 -11652499 + (CAAAA)n Simple_repeat Simple_repeat 1 50 0 36294 238 13 11 chrY 13060580 13067575 -11645504 + HERVE LTR ERV1 539 7557 -256 2173 106 0 0 chrY 13067575 13067899 -11645180 + AluY SINE Alu 10 311 0 36294 238 13 11 chrY 13067899 13068156 -11644923 + HERVE LTR ERV1 7557 7812 -1 3431 88 49 2 chrY 13068156 13068624 -11644455 + LTR2B LTR ERV1 1 490 0 1053 228 15 19 chrY 13068697 13068956 -11644123 + AluJo SINE Alu 1 258 -54 729 157 4 26 chrY 13068971 13069201 -11643878 + GA-rich Low_complexity Low_complexity 1 225 0 212 156 0 0 chrY 13069201 13069233 -11643846 + polypurine Low_complexity Low_complexity 1 32 0 487 226 0 0 chrY 13069628 13069721 -11643358 + AluSg1 SINE Alu 1 93 -216 289 138 123 0 chrY 13069732 13069797 -11643282 - LTR8 LTR ERV1 -226 465 393 * 1827 179 63 58 chrY 13069764 13070210 -11642869 - LTR8A LTR ERV1 -267 460 13 220 189 27 14 chrY 13070243 13070317 -11642762 + (TAGA)n Simple_repeat Simple_repeat 4 78 0 1408 194 47 29 chrY 13070456 13070796 -11642283 + MER4A LTR ERV1 1 346 -318 495 157 223 16 chrY 13070932 13071053 -11642026 + MER4C LTR ERV1 302 447 -18 1709 187 3 0 chrY 13071697 13071991 -11641088 + AluSc SINE Alu 3 297 -12 22 56 0 0 chrY 13072019 13072055 -11641024 + AT_rich Low_complexity Low_complexity 1 36 0 4535 149 9 3 chrY 13072099 13072848 -11640231 + L1PB1 LINE L1 5396 6149 -2 24 0 0 0 chrY 13072940 13072964 -11640115 + AT_rich Low_complexity Low_complexity 1 24 0 180 152 0 0 chrY 13072979 13073012 -11640067 + (TA)n Simple_repeat Simple_repeat 1 33 0 1403 139 28 28 chrY 13073923 13074175 -11638904 - L1PB1 LINE L1 0 6151 5900 446 0 0 18 chrY 13074201 13074256 -11638823 + (TAGA)n Simple_repeat Simple_repeat 2 55 0 1580 126 0 0 chrY 13074272 13074502 -11638577 - L1PB1 LINE L1 -397 5754 5525 2474 4 0 0 chrY 13075137 13075404 -11637675 + AluYa8 SINE Alu 41 307 -3 207 0 0 0 chrY 13075461 13075484 -11637595 + (A)n Simple_repeat Simple_repeat 1 23 0 21 71 0 0 chrY 13075493 13075535 -11637544 + AT_rich Low_complexity Low_complexity 1 42 0 24 77 0 0 chrY 13077944 13077996 -11635083 + AT_rich Low_complexity Low_complexity 1 52 0 2977 195 14 10 chrY 13078099 13078277 -11634802 - L1MB3 LINE L1 -38 6145 5969 4091 132 6 24 chrY 13078277 13078949 -11634130 + PABL_A LTR ERV1 1 660 0 2977 195 14 10 chrY 13078949 13079462 -11633617 - L1MB3 LINE L1 -214 5969 5451 1674 182 0 21 chrY 13079495 13079819 -11633260 + AluSx SINE Alu 3 320 0 2700 127 42 7 chrY 13079844 13080277 -11632802 - LTR7 LTR ERV1 -2 448 1 458 83 14 0 chrY 13080312 13080384 -11632695 + (TG)n Simple_repeat Simple_repeat 2 74 0 240 257 81 0 chrY 13080750 13080824 -11632255 - L2 LINE L2 0 3313 3234 1317 186 27 73 chrY 13081114 13081415 -11631664 + AluJo SINE Alu 3 289 -23 1785 181 3 16 chrY 13081805 13082108 -11630971 - AluSg SINE Alu -11 299 1 974 134 0 6 chrY 13082140 13082319 -11630760 + (TTCC)n Simple_repeat Simple_repeat 1 178 0 531 69 0 0 chrY 13082337 13082409 -11630670 + (TTCC)n Simple_repeat Simple_repeat 4 75 0 1255 213 87 4 chrY 13082413 13082667 -11630412 - AluSx SINE Alu -32 280 6 20165 61 1 0 chrY 13083013 13085758 -11627321 - L1PA3 LINE L1 -2262 3884 1136 11443 60 1 2 chrY 13085758 13086195 -11626884 + L1PA3 LINE L1 3893 4329 -1850 2883 16 0 0 chrY 13086195 13086511 -11626568 + AluYb8 SINE Alu 1 316 -2 11443 60 1 2 chrY 13086511 13088372 -11624707 + L1PA3 LINE L1 4329 6179 0 324 0 0 0 chrY 13088506 13088542 -11624537 + (TG)n Simple_repeat Simple_repeat 2 37 0 22 35 0 0 chrY 13088641 13088670 -11624409 + AT_rich Low_complexity Low_complexity 1 29 0 1157 247 0 47 chrY 13088716 13089037 -11624042 - AluJo SINE Alu 0 307 1 807 246 6 11 chrY 13089090 13089273 -11623806 - AluJo SINE Alu -92 220 39 284 158 18 0 chrY 13089296 13089353 -11623726 + (TTA)n Simple_repeat Simple_repeat 3 60 0 24 85 0 0 chrY 13089458 13089517 -11623562 + AT_rich Low_complexity Low_complexity 1 59 0 8280 44 0 0 chrY 13090440 13091504 -11621575 - L1PA4 LINE L1 -1445 4701 3638 6628 70 12 6 chrY 13091504 13092953 -11620126 + L1PA4 LINE L1 4693 6152 -3 903 286 196 15 chrY 13093145 13093665 -11619414 - MLT1E2 LTR MaLR -12 614 1 816 209 2 2 chrY 13093724 13094201 -11618878 + (ATG)n Simple_repeat Simple_repeat 1 477 0 225 296 28 19 chrY 13094812 13094920 -11618159 + (CATATA)n Simple_repeat Simple_repeat 2 110 0 1874 163 68 0 chrY 13094959 13095297 -11617782 + THE1B LTR MaLR 1 361 -3 1653 184 4 0 chrY 13095297 13095563 -11617516 - AluSx SINE Alu -33 279 13 36 62 0 0 chrY 13096441 13096505 -11616574 + AT_rich Low_complexity Low_complexity 1 64 0 213 238 62 6 chrY 13096524 13096684 -11616395 + (TA)n Simple_repeat Simple_repeat 1 169 0 1750 180 0 0 chrY 13096686 13096964 -11616115 - AluSx SINE Alu -22 290 13 1728 199 0 3 chrY 13097296 13097593 -11615486 + AluJb SINE Alu 1 296 -16 1155 219 7 37 chrY 13097622 13097919 -11615160 - LTR51 LTR ERV1 0 671 384 377 125 42 0 chrY 13097919 13097991 -11615088 + (ATGGTG)n Simple_repeat Simple_repeat 1 75 0 1552 199 60 11 chrY 13098003 13098369 -11614710 - LTR51 LTR ERV1 -285 386 3 1587 154 73 18 chrY 13098468 13098773 -11614306 + AluSx SINE Alu 26 345 0 1422 211 18 21 chrY 13099922 13100097 -11612982 - AluSx SINE Alu 0 313 139 204 40 0 0 chrY 13100097 13100122 -11612957 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 1592 105 0 5 chrY 13100122 13100332 -11612747 - AluY SINE Alu -102 209 1 1422 211 18 21 chrY 13100332 13100469 -11612610 - AluSx SINE Alu -172 141 1 201 263 228 26 chrY 13100512 13100626 -11612453 - L2 LINE L2 -7 3306 3170 843 246 19 0 chrY 13100698 13100913 -11612166 + MER58A DNA MER1_type 6 224 0 1693 152 7 10 chrY 13101104 13101393 -11611686 - AluSx SINE Alu -1 311 24 974 228 68 120 chrY 13101443 13101971 -11611108 - L1MD2 LINE L1 -16 6343 5789 1819 168 0 19 chrY 13101971 13102281 -11610798 - AluSc SINE Alu 0 309 6 974 228 68 120 chrY 13102281 13102405 -11610674 - L1MD2 LINE L1 -570 5789 5734 1519 186 28 7 chrY 13102405 13102695 -11610384 - AluJb SINE Alu -14 298 3 974 228 68 120 chrY 13102695 13102810 -11610269 - L1MD2 LINE L1 -625 5734 5615 27 29 0 0 chrY 13103077 13103111 -11609968 + AT_rich Low_complexity Low_complexity 1 34 0 977 92 0 0 chrY 13103153 13103295 -11609784 + HERVK9 LTR ERVK 1765 1906 -4010 23521 91 22 27 chrY 13103295 13106864 -11606215 + HERVK9 LTR ERVK 2364 5914 -2 3501 123 2 4 chrY 13106866 13107378 -11605701 + MER9 LTR ERVK 1 511 0 3933 177 55 13 chrY 13107378 13108202 -11604877 - MER4D LTR ERV1 -45 858 1 185 344 31 0 chrY 13108391 13108455 -11604624 + L2 LINE L2 3235 3300 -13 25 0 0 0 chrY 13108838 13108863 -11604216 + AT_rich Low_complexity Low_complexity 1 25 0 593 231 8 0 chrY 13109054 13109175 -11603904 + FLAM_C SINE Alu 1 122 -21 1593 203 18 3 chrY 13109391 13109677 -11603402 + AluSx SINE Alu 1 290 -22 21 36 0 0 chrY 13109745 13109773 -11603306 + AT_rich Low_complexity Low_complexity 1 28 0 246 289 53 0 chrY 13110066 13110142 -11602937 + L2 LINE L2 3225 3304 -9 1344 239 4 4 chrY 13110456 13110728 -11602351 + AluJb SINE Alu 4 275 -37 853 162 11 15 chrY 13110728 13111003 -11602076 + GA-rich Low_complexity Low_complexity 1 274 0 303 28 0 0 chrY 13111003 13111039 -11602040 + (GGAA)n Simple_repeat Simple_repeat 1 36 0 233 89 22 0 chrY 13111386 13111431 -11601648 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 342 253 130 34 chrY 13111623 13111769 -11601310 - LTR1B LTR ERV1 0 826 667 1282 240 95 24 chrY 13111787 13112295 -11600784 - LTR1B LTR ERV1 -347 479 1 1690 165 64 0 chrY 13112375 13112641 -11600438 + AluSx SINE Alu 1 283 -29 617 189 9 0 chrY 13112668 13112774 -11600305 + FLAM_C SINE Alu 3 109 -34 24 0 0 0 chrY 13112774 13112798 -11600281 + AT_rich Low_complexity Low_complexity 1 24 0 31 26 0 0 chrY 13113120 13113158 -11599921 + AT_rich Low_complexity Low_complexity 1 38 0 1413 212 0 56 chrY 13113296 13113602 -11599477 + AluJb SINE Alu 13 301 -11 688 236 10 15 chrY 13114072 13114263 -11598816 + MER3 DNA MER1_type 3 192 -17 2221 156 64 50 chrY 13114263 13114861 -11598218 + MER4B LTR ERV1 1 777 -2 3449 150 24 0 chrY 13114949 13115497 -11597582 - MER61E LTR ERV1 -4 565 5 1423 160 22 95 chrY 13115854 13116008 -11597071 - LTR8 LTR ERV1 -11 680 516 288 120 0 0 chrY 13116008 13116058 -11597021 + (TTTTG)n Simple_repeat Simple_repeat 2 51 0 1423 160 22 95 chrY 13116058 13116073 -11597006 - LTR8 LTR ERV1 -175 516 501 1424 213 18 21 chrY 13116073 13116359 -11596720 - AluSx SINE Alu -26 286 2 1423 160 22 95 chrY 13116359 13116588 -11596491 - LTR8 LTR ERV1 -190 501 310 6471 30 0 0 chrY 13116682 13117479 -11595600 - L1PA3 LINE L1 0 6155 5359 358 213 41 49 chrY 13117479 13117601 -11595478 - LTR8 LTR ERV1 -442 249 129 664 213 22 0 chrY 13167610 13167746 -11545333 - LTR8A LTR ERV1 -588 139 1 21 0 0 0 chrY 13169129 13169150 -11543929 + AT_rich Low_complexity Low_complexity 1 21 0 2661 144 2 27 chrY 13169293 13169724 -11543355 + MER57B LTR ERV1 1 422 -12 1834 82 103 7 chrY 13169724 13170005 -11543074 - L1PA5 LINE L1 -2 6152 5845 2661 144 2 27 chrY 13170005 13170018 -11543061 + MER57B LTR ERV1 422 434 0 366 150 38 45 chrY 13170985 13171118 -11541961 + (TCTA)n Simple_repeat Simple_repeat 2 133 0 240 282 12 0 chrY 13171134 13171219 -11541860 - L1MC4 LINE L1 -112 7930 7845 229 182 136 15 chrY 13171545 13171611 -11541468 - L1MC/D LINE L1 -2298 5510 5437 296 178 14 0 chrY 13171613 13171686 -11541393 + (TCTA)n Simple_repeat Simple_repeat 1 74 0 2012 146 7 3 chrY 13172024 13172326 -11540753 + AluSp SINE Alu 2 304 -9 1158 240 10 22 chrY 13172921 13173234 -11539845 - L1MA8 LINE L1 -22 6269 5961 231 111 0 0 chrY 13173775 13173820 -11539259 - LTR66 LTR ERVL -172 438 394 1911 129 4 11 chrY 13173839 13174118 -11538961 - AluY SINE Alu -19 292 16 3429 133 7 11 chrY 13174308 13174864 -11538215 - MER41A LTR ERV1 0 554 1 262 259 0 0 chrY 13175246 13175300 -11537779 - MER58 DNA MER1_type -104 237 184 492 200 0 0 chrY 13175322 13175417 -11537662 - FLAM_C SINE Alu -18 125 31 468 151 38 19 chrY 13175435 13175541 -11537538 - MER58 DNA MER1_type -154 187 80 1818 129 0 0 chrY 13175542 13175814 -11537265 + L1PB1 LINE L1 5517 5788 -363 1495 131 180 77 chrY 13175814 13176180 -11536899 - MER4A LTR ERV1 0 664 261 448 202 0 10 chrY 13176180 13176279 -11536800 - MER4A LTR ERV1 -566 98 1 2161 135 14 8 chrY 13176279 13176643 -11536436 + L1PB1 LINE L1 5785 6150 -1 2487 166 83 16 chrY 13176690 13177203 -11535876 + LTR29 LTR ERV1 5 552 -70 2211 151 26 21 chrY 13177203 13177317 -11535762 - MER57B LTR ERV1 -2 432 320 2174 220 18 10 chrY 13177317 13177826 -11535253 + LTR10D LTR ERV1 1 513 0 2211 151 26 21 chrY 13177826 13178141 -11534938 - MER57B LTR ERV1 -114 320 1 250 274 0 0 chrY 13178442 13178504 -11534575 + (TA)n Simple_repeat Simple_repeat 1 62 0 326 83 0 50 chrY 13178518 13178578 -11534501 + (TCCC)n Simple_repeat Simple_repeat 4 60 0 217 77 51 0 chrY 13178578 13178617 -11534462 + CT-rich Low_complexity Low_complexity 3 43 0 6283 42 0 2 chrY 13178649 13179850 -11533229 + L1PA3 LINE L1 4589 5786 -369 37673 57 32 2 chrY 13179853 13185819 -11527260 + L1PA3 LINE L1 2 6155 0 2979 66 0 0 chrY 13185835 13186216 -11526863 + L1PA3 LINE L1 5770 6150 -5 2248 148 16 11 chrY 13186321 13186693 -11526386 - THE1C LTR MaLR -1 374 1 565 200 45 0 chrY 13186785 13186895 -11526184 + FRAM SINE Alu 41 155 -21 226 279 0 15 chrY 13187282 13187350 -11525729 - LTR29 LTR ERV1 0 622 556 317 217 23 158 chrY 13187350 13187569 -11525510 - L1M4 LINE L1 -2930 3216 3048 2051 158 33 25 chrY 13187569 13187930 -11525149 + THE1B LTR MaLR 1 364 0 317 217 23 158 chrY 13187930 13188014 -11525065 - L1M4 LINE L1 -3098 3048 2954 28 0 0 0 chrY 13188100 13188128 -11524951 + AT_rich Low_complexity Low_complexity 1 28 0 2084 125 7 0 chrY 13188364 13188675 -11524404 + AluY SINE Alu 1 313 0 418 295 35 48 chrY 13188738 13189138 -11523941 + L1ME2 LINE L1 5616 6010 -154 1960 164 30 14 chrY 13189238 13189605 -11523474 + THE1C LTR MaLR 3 375 0 34278 42 3 1 chrY 13190913 13196254 -11516825 + L1PA2 LINE L1 678 6155 0 909 132 0 13 chrY 13196254 13196413 -11516666 - L1P3 LINE L1 -540 5632 5476 491 136 11 0 chrY 13196409 13196497 -11516582 - L1P3 LINE L1 -1510 4636 4548 * 6930 137 22 11 chrY 13196492 13197864 -11515215 - L1P3 LINE L1 -683 5489 4112 1845 198 41 19 chrY 13198877 13199165 -11513914 + L1PA16 LINE L1 5729 6030 -136 1057 176 152 59 chrY 13199165 13199488 -11513591 - THE1A LTR MaLR 0 355 3 1845 198 41 19 chrY 13199488 13199618 -11513461 + L1PA16 LINE L1 6030 6156 -10 879 289 19 56 chrY 13199727 13200042 -11513037 - MLT1D LTR MaLR 0 505 215 2935 115 11 11 chrY 13200042 13200495 -11512584 - L1PA10 LINE L1 -6 6162 5710 879 289 19 56 chrY 13200495 13200694 -11512385 - MLT1D LTR MaLR -290 215 10 1064 222 9 0 chrY 13201632 13201862 -11511217 + MER46A DNA MER2_type 1 232 -4 1979 171 0 0 chrY 13201899 13202198 -11510881 + AluSx SINE Alu 1 299 -13 22 0 0 0 chrY 13202241 13202263 -11510816 + AT_rich Low_complexity Low_complexity 1 22 0 2305 67 6 13 chrY 13202885 13203198 -11509881 - AluY SINE Alu 0 311 1 284 181 52 17 chrY 13203870 13203986 -11509093 + (TA)n Simple_repeat Simple_repeat 2 121 0 249 136 61 8 chrY 13203998 13204130 -11508949 + (TA)n Simple_repeat Simple_repeat 1 139 0 274 254 36 7 chrY 13204148 13204286 -11508793 + (TA)n Simple_repeat Simple_repeat 2 143 0 1935 179 42 28 chrY 13204586 13205043 -11508036 + LTR29 LTR ERV1 160 622 0 450 294 108 49 chrY 13205147 13205599 -11507480 - L1M4 LINE L1 -1318 4828 4350 16342 147 28 23 chrY 13205777 13206153 -11506926 + L1P3 LINE L1 5 378 -6083 189 0 0 0 chrY 13206153 13206174 -11506905 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 16342 147 28 23 chrY 13206174 13208610 -11504469 + L1P3 LINE L1 378 2830 -3631 2149 139 0 0 chrY 13208610 13208912 -11504167 + AluY SINE Alu 1 302 -9 16342 147 28 23 chrY 13208912 13210221 -11502858 + L1P3 LINE L1 2830 4131 -2330 5019 95 29 6 chrY 13210263 13210990 -11502089 + L1PA7 LINE L1 5411 6154 0 1439 208 14 27 chrY 13211067 13211361 -11501718 + AluJo SINE Alu 5 294 -18 1292 211 71 104 chrY 13211372 13211823 -11501256 - LTR8 LTR ERV1 -5 686 287 1097 183 8 50 chrY 13211853 13212093 -11500986 - AluJo SINE Alu -10 302 73 753 223 55 27 chrY 13212105 13212325 -11500754 - LTR8 LTR ERV1 -465 226 1 633 258 74 0 chrY 13212490 13212746 -11500333 + MER33 DNA MER1_type 7 281 -43 290 272 106 28 chrY 13213065 13213245 -11499834 + LTR67 LTR ERVL 358 551 -6 1625 186 3 3 chrY 13213399 13213684 -11499395 - AluJb SINE Alu -19 293 9 264 131 0 14 chrY 13213705 13213758 -11499321 - AluJb SINE Alu -178 124 85 288 0 0 0 chrY 13213986 13214018 -11499061 + (TG)n Simple_repeat Simple_repeat 2 33 0 959 160 0 19 chrY 13214035 13214191 -11498888 - FRAM SINE Alu -28 148 1 313 230 11 35 chrY 13214206 13214293 -11498786 - L1MCa LINE L1 -4362 2064 1980 529 203 8 0 chrY 13214293 13214561 -11498518 + (TA)n Simple_repeat Simple_repeat 1 270 0 246 32 0 0 chrY 13214561 13214592 -11498487 + (GA)n Simple_repeat Simple_repeat 2 32 0 373 260 29 10 chrY 13214593 13214697 -11498382 - FLAM_C SINE Alu -22 111 6 1729 176 3 17 chrY 13214814 13215115 -11497964 + AluSx SINE Alu 3 299 -13 396 88 0 0 chrY 13215639 13215696 -11497383 + (TAA)n Simple_repeat Simple_repeat 2 58 0 1630 191 11 3 chrY 13215704 13215987 -11497092 - AluSx SINE Alu -27 285 1 1407 206 20 10 chrY 13216231 13216527 -11496552 - AluJb SINE Alu -1 311 13 21 0 0 0 chrY 13216544 13216565 -11496514 + AT_rich Low_complexity Low_complexity 1 21 0 916 170 108 18 chrY 13217121 13217371 -11495708 + MER49 LTR ERV1 1 294 -629 968 257 31 25 chrY 13217398 13217721 -11495358 + MER4D LTR ERV1 541 865 -38 237 180 0 0 chrY 13217725 13217775 -11495304 + CT-rich Low_complexity Low_complexity 3 52 0 1583 216 7 0 chrY 13218030 13218317 -11494762 + AluJb SINE Alu 1 289 -23 2189 90 4 0 chrY 13218332 13218611 -11494468 + AluY SINE Alu 30 309 -2 27 29 0 0 chrY 13218777 13218811 -11494268 + AT_rich Low_complexity Low_complexity 1 34 0 2049 148 0 3 chrY 13219164 13219467 -11493612 - AluSx SINE Alu -2 310 9 1307 189 10 56 chrY 13219572 13219878 -11493201 + AluJo SINE Alu 15 306 -6 1690 183 60 0 chrY 13220508 13220792 -11492287 - AluSx SINE Alu -11 301 1 4031 75 35 20 chrY 13221359 13222381 -11490698 - MER11A LTR ERVK 0 1266 1 1866 127 23 52 chrY 13222387 13222695 -11490384 + AluY SINE Alu 1 299 -12 334 326 110 37 chrY 13222716 13223145 -11489934 - L1M4 LINE L1 -1564 4582 4123 1392 241 0 3 chrY 13223271 13223566 -11489513 - AluJb SINE Alu -6 306 13 682 202 0 167 chrY 13224010 13224180 -11488899 + AluJb SINE Alu 85 199 -113 1691 173 0 58 chrY 13224180 13224492 -11488587 + AluSx SINE Alu 1 294 -18 682 202 0 167 chrY 13224492 13224579 -11488500 + AluJb SINE Alu 199 299 -13 1467 239 131 48 chrY 13224611 13225293 -11487786 - LTR68 LTR ERV1 0 740 3 2771 183 18 52 chrY 13225399 13225913 -11487166 + MER41B LTR ERV1 1 490 -145 2320 101 0 0 chrY 13225913 13226220 -11486859 - AluY SINE Alu -2 309 3 2771 183 18 52 chrY 13226220 13226362 -11486717 + MER41B LTR ERV1 490 635 0 432 308 114 73 chrY 13226363 13226993 -11486086 - L1M4 LINE L1 -2503 3643 2988 1273 187 28 44 chrY 13226995 13227316 -11485763 + LTR8 LTR ERV1 1 316 -375 15566 159 44 36 chrY 13227354 13231718 -11481361 + L1P3 LINE L1 6 4440 -2021 7308 91 14 6 chrY 13231718 13232717 -11480362 + LTR13 LTR ERVK 1 1007 0 820 216 11 6 chrY 13232717 13232898 -11480181 + HERVK13 LTR ERVK 1 182 -7934 585 224 6 26 chrY 13233202 13233358 -11479721 + HERVK13 LTR ERVK 1078 1230 -6886 473 289 38 0 chrY 13233405 13233564 -11479515 + HERVK13 LTR ERVK 3949 4113 -4003 10202 252 13 8 chrY 13233578 13236995 -11476084 + HERVK13 LTR ERVK 4572 8116 0 7504 93 12 0 chrY 13236995 13237990 -11475089 + LTR13 LTR ERVK 1 1007 0 7519 133 10 2 chrY 13237990 13240011 -11473068 + L1PA7 LINE L1 4120 6139 -15 243 0 0 0 chrY 13240011 13240038 -11473041 + (TA)n Simple_repeat Simple_repeat 1 27 0 530 122 0 11 chrY 13240038 13240128 -11472951 + (CA)n Simple_repeat Simple_repeat 2 90 0 21 0 0 0 chrY 13240130 13240151 -11472928 + AT_rich Low_complexity Low_complexity 1 21 0 779 244 84 45 chrY 13240623 13241010 -11472069 - Charlie5 DNA MER1_type -1498 1126 711 3654 148 54 19 chrY 13241010 13241326 -11471753 + L1PA13 LINE L1 5439 5742 -421 1863 153 0 3 chrY 13241326 13241633 -11471446 + AluSc SINE Alu 1 306 0 3654 148 54 19 chrY 13241633 13241997 -11471082 + L1PA13 LINE L1 5742 6144 -19 779 244 84 45 chrY 13241997 13242145 -11470934 - Charlie5 DNA MER1_type -1913 711 570 1036 149 52 0 chrY 13242880 13243074 -11470005 + L1PA14 LINE L1 5957 6160 -1 2344 176 56 71 chrY 13243236 13243771 -11469308 - MER1A DNA MER1_type 0 527 1 257 339 17 0 chrY 13243814 13243932 -11469147 - LTR16A1 LTR ERVL 0 457 338 1994 141 3 3 chrY 13244564 13244855 -11468224 - AluSq SINE Alu -22 291 1 1545 216 11 3 chrY 13245056 13245343 -11467736 + AluSx SINE Alu 1 289 -23 21 0 0 0 chrY 13245344 13245365 -11467714 + AT_rich Low_complexity Low_complexity 1 21 0 2185 109 0 10 chrY 13245403 13245705 -11467374 - AluY SINE Alu -12 299 1 221 216 0 20 chrY 13246716 13246767 -11466312 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 487 278 20 0 chrY 13246851 13247002 -11466077 + MER20 DNA MER1_type 66 219 0 3037 125 4 2 chrY 13247157 13247676 -11465403 - L1P LINE L1 -942 5204 4685 333 0 0 0 chrY 13247686 13247723 -11465356 + (TTA)n Simple_repeat Simple_repeat 3 39 0 28881 56 2 2 chrY 13247723 13252388 -11460691 - L1PA3 LINE L1 -18 6137 1472 437 165 0 0 chrY 13252379 13252458 -11460621 - L1P LINE L1 -1477 4669 4591 * 225 0 0 0 chrY 13252725 13252750 -11460329 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 207 0 0 0 chrY 13254012 13254035 -11459044 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 2111 189 42 14 chrY 13254039 13254541 -11458538 + L1MA7 LINE L1 5776 6291 0 1860 168 0 10 chrY 13254566 13254864 -11458215 + AluSx SINE Alu 1 295 -17 208 106 85 0 chrY 13255141 13255188 -11457891 + (TTTAG)n Simple_repeat Simple_repeat 3 53 0 1779 171 20 7 chrY 13255383 13255682 -11457397 + AluJb SINE Alu 1 303 -9 420 273 0 22 chrY 13256223 13256362 -11456717 - MER20 DNA MER1_type -31 188 53 1110 163 5 7 chrY 13256400 13256627 -11456452 + L1MA7 LINE L1 5744 5969 -322 287 182 80 0 chrY 13256653 13256741 -11456338 - MER53 DNA DNA 0 189 95 2044 158 0 0 chrY 13257603 13257895 -11455184 + AluSg SINE Alu 1 292 -18 609 219 0 0 chrY 13258078 13258233 -11454846 + (ATG)n Simple_repeat Simple_repeat 2 156 0 686 216 6 0 chrY 13258268 13258444 -11454635 + (ATG)n Simple_repeat Simple_repeat 3 179 0 22 0 0 0 chrY 13258497 13258519 -11454560 + AT_rich Low_complexity Low_complexity 1 22 0 1972 141 0 20 chrY 13258612 13258911 -11454168 + AluSc SINE Alu 2 294 -15 1880 201 13 0 chrY 13260455 13260844 -11452235 - L1PA16 LINE L1 -9 6157 5764 420 36 0 179 chrY 13261351 13261435 -11451644 - MADE1 DNA Mariner 0 80 12 365 80 0 0 chrY 13261457 13261507 -11451572 - MADE1 DNA Mariner -30 50 1 468 159 80 43 chrY 13262373 13262511 -11450568 + MER53 DNA DNA 36 178 -11 323 81 0 16 chrY 13262801 13262863 -11450216 + L1MA2 LINE L1 6244 6304 0 312 70 0 0 chrY 13262912 13262955 -11450124 + (CA)n Simple_repeat Simple_repeat 2 44 0 38963 52 22 2 chrY 13263091 13269122 -11443957 + L1PA3 LINE L1 1 6152 -3 28 0 0 0 chrY 13269122 13269150 -11443929 + AT_rich Low_complexity Low_complexity 1 28 0 511 149 55 0 chrY 13269942 13270043 -11443036 - L1PA15 LINE L1 -43 6131 6024 255 79 0 0 chrY 13270051 13270089 -11442990 + (TTTG)n Simple_repeat Simple_repeat 3 40 0 232 200 0 33 chrY 13270105 13270165 -11442914 - AluSc SINE Alu -8 291 234 1806 183 43 0 chrY 13270165 13270537 -11442542 - L1PA15 LINE L1 -251 5914 5527 266 211 0 0 chrY 13270537 13270589 -11442490 + LTR30 LTR ERV1 1 52 -670 1688 198 17 98 chrY 13270589 13271124 -11441955 + LTR12 LTR ERV1 55 2225 -213 332 125 31 0 chrY 13271124 13271188 -11441891 - L1PA15 LINE L1 -639 5529 5464 223 222 28 0 chrY 13271408 13271480 -11441599 + (TTTA)n Simple_repeat Simple_repeat 1 74 0 265 258 47 74 chrY 13272397 13272587 -11440492 + L1M4 LINE L1 3297 3481 -2665 361 344 45 49 chrY 13272657 13272901 -11440178 + L1M4 LINE L1 3503 3745 -2401 27 62 0 0 chrY 13273231 13273279 -11439800 + AT_rich Low_complexity Low_complexity 1 48 0 1228 173 150 28 chrY 13273446 13273700 -11439379 + AluSx SINE Alu 1 285 -27 290 304 20 0 chrY 13273887 13273989 -11439090 - MER5A DNA MER1_type -77 112 9 3156 165 2 19 chrY 13274371 13274905 -11438174 - MER1A DNA MER1_type 0 527 3 1679 198 48 23 chrY 13275868 13275938 -11437141 - THE1B LTR MaLR 0 428 361 2002 149 0 0 chrY 13275938 13276220 -11436859 + AluSg SINE Alu 1 282 -28 1679 198 48 23 chrY 13276220 13276556 -11436523 - THE1B LTR MaLR -67 361 1 3063 177 3 17 chrY 13276562 13277166 -11435913 + L1PB4 LINE L1 5558 6153 -3 1144 131 29 29 chrY 13277390 13277644 -11435435 + Tigger2 DNA MER2_type 3 2547 -171 1737 191 72 3 chrY 13278175 13278369 -11434710 + MSTA LTR MaLR 1 180 -248 237 33 0 0 chrY 13278369 13278399 -11434680 + (CA)n Simple_repeat Simple_repeat 2 31 0 1737 191 72 3 chrY 13278399 13278581 -11434498 + MSTA LTR MaLR 180 403 -25 806 152 17 17 chrY 13278586 13278764 -11434315 + CT-rich Low_complexity Low_complexity 2 179 0 1682 196 4 0 chrY 13278764 13279039 -11434040 - AluSg SINE Alu -34 276 1 252 0 0 0 chrY 13279892 13279920 -11433159 + (A)n Simple_repeat Simple_repeat 1 28 0 793 230 25 5 chrY 13280238 13280438 -11432641 + L1PA16 LINE L1 5949 6152 -14 1634 223 65 30 chrY 13280495 13280970 -11432109 + MLT2B1 LTR ERVL 3 494 -26 1944 225 38 60 chrY 13281820 13282487 -11430592 - L1MB7 LINE L1 -13 6171 5520 272 192 13 39 chrY 13282856 13282934 -11430145 - L1MB7 LINE L1 -627 5547 5472 3128 197 22 22 chrY 13283044 13283801 -11429278 + L1PB4 LINE L1 5392 6148 -8 25 51 0 0 chrY 13283837 13283876 -11429203 + AT_rich Low_complexity Low_complexity 1 39 0 282 259 112 101 chrY 13285138 13285350 -11427729 + L2 LINE L2 3025 3242 -71 2431 179 38 45 chrY 13285350 13285880 -11427199 + MER1A DNA MER1_type 1 526 -1 282 259 112 101 chrY 13285880 13285953 -11427126 + L2 LINE L2 3242 3313 0 740 244 38 109 chrY 13286040 13286433 -11426646 + MLT1A1 LTR MaLR 1 365 0 489 187 0 0 chrY 13286549 13286640 -11426439 + MER68 LTR ERV1 1 91 -471 612 287 64 14 chrY 13286682 13287028 -11426051 - MLT1C LTR MaLR -3 464 6 625 222 28 0 chrY 13287076 13287220 -11425859 + MER68 LTR ERV1 142 289 -273 873 151 24 0 chrY 13287286 13287452 -11425627 - L1MA5A LINE L1 -185 6112 5943 1803 154 0 92 chrY 13287452 13287491 -11425588 - L1PA13 LINE L1 -7 6156 6115 1827 163 24 37 chrY 13287491 13287871 -11425208 + THE1C LTR MaLR 1 375 0 1803 154 0 92 chrY 13287871 13288078 -11425001 - L1PA13 LINE L1 -48 6115 5959 1908 153 27 0 chrY 13288078 13288378 -11424701 - AluSg SINE Alu -2 308 1 1803 154 0 92 chrY 13288378 13288533 -11424546 - L1PA13 LINE L1 -204 5959 5791 2105 177 74 6 chrY 13288687 13289162 -11423917 - L1PB4 LINE L1 -9 6147 5641 4575 111 49 85 chrY 13289273 13290130 -11422949 - LTR12 LTR ERV1 0 826 1 624 249 56 53 chrY 13290305 13290590 -11422489 - pTR5 LTR ERV1 -1410 1028 743 1575 225 10 7 chrY 13291084 13291391 -11421688 - AluJo SINE Alu -4 308 1 851 159 0 0 chrY 13291401 13291527 -11421552 - FLAM_C SINE Alu -17 126 1 2754 20 0 0 chrY 13291582 13291887 -11421192 + AluY SINE Alu 1 305 -6 1549 241 50 67 chrY 13292061 13292318 -11420761 - MER68 LTR ERV1 -11 551 291 2083 138 3 10 chrY 13292318 13292630 -11420449 + AluSx SINE Alu 1 310 -2 1549 241 50 67 chrY 13292630 13292927 -11420152 - MER68 LTR ERV1 -271 291 6 23 0 0 0 chrY 13292932 13292955 -11420124 + AT_rich Low_complexity Low_complexity 1 23 0 1596 199 0 9 chrY 13293146 13293468 -11419611 - L1PB4 LINE L1 0 6156 5838 1186 219 50 26 chrY 13293524 13293677 -11419402 - L1MB7 LINE L1 -21 6163 6015 1800 163 7 33 chrY 13293677 13293812 -11419267 + AluJo SINE Alu 1 138 -174 225 0 0 0 chrY 13293812 13293837 -11419242 + (TA)n Simple_repeat Simple_repeat 2 26 0 * 333 0 0 0 chrY 13293836 13293873 -11419206 + (CA)n Simple_repeat Simple_repeat 2 38 0 1800 163 7 33 chrY 13293837 13294044 -11419035 + AluJo SINE Alu 138 299 -13 1186 219 50 26 chrY 13294044 13294232 -11418847 - L1MB7 LINE L1 -169 6015 5814 23 78 0 0 chrY 13294645 13294696 -11418383 + AT_rich Low_complexity Low_complexity 1 51 0 2066 155 0 0 chrY 13294696 13294992 -11418087 + AluSg SINE Alu 6 301 -9 2914 127 16 37 chrY 13295133 13295222 -11417857 + L1PA15 LINE L1 5583 5672 -493 1959 141 17 0 chrY 13295222 13295519 -11417560 - AluSq SINE Alu -11 302 1 2914 127 16 37 chrY 13295519 13295941 -11417138 + L1PA15 LINE L1 5672 6083 -82 184 286 107 0 chrY 13296644 13296700 -11416379 + MIR3 SINE MIR 102 163 -45 189 0 0 0 chrY 13296728 13296749 -11416330 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 1241 166 17 103 chrY 13296757 13297058 -11416021 - AluJo SINE Alu -37 275 1 281 186 14 0 chrY 13297193 13297263 -11415816 + GA-rich Low_complexity Low_complexity 2 72 0 27 0 0 0 chrY 13297901 13297928 -11415151 + AT_rich Low_complexity Low_complexity 1 27 0 781 213 39 10 chrY 13298034 13298241 -11414838 - L1MB7 LINE L1 -14 6170 5958 1504 151 160 12 chrY 13298394 13298725 -11414354 + MSTA LTR MaLR 1 380 -48 808 153 14 28 chrY 13298725 13298869 -11414210 + AluSg/x SINE Alu 163 304 -6 314 157 0 0 chrY 13298869 13298920 -11414159 + MSTA LTR MaLR 378 428 0 421 135 104 0 chrY 13299305 13299401 -11413678 + L1MA8 LINE L1 6174 6279 -12 303 267 23 0 chrY 13299441 13299527 -11413552 - AluSq/x SINE Alu -171 131 44 22 56 0 0 chrY 13300092 13300128 -11412951 + AT_rich Low_complexity Low_complexity 1 36 0 351 257 59 15 chrY 13300643 13300836 -11412243 - MER93a LTR ERV1 -6 397 198 342 0 0 0 chrY 13301017 13301055 -11412024 + (TTG)n Simple_repeat Simple_repeat 1 38 0 1737 150 0 35 chrY 13301057 13301344 -11411735 - AluSg SINE Alu -33 277 1 1591 214 14 0 chrY 13301478 13301772 -11411307 - AluSx SINE Alu -14 298 1 240 86 0 0 chrY 13301965 13302000 -11411079 + (TG)n Simple_repeat Simple_repeat 2 36 0 1909 168 21 16 chrY 13302103 13302491 -11410588 - LTR23 LTR ERV1 -36 401 12 2131 217 0 10 chrY 13303534 13304050 -11409029 - L1 LINE L1 -1551 4595 4085 953 174 0 0 chrY 13304042 13304226 -11408853 + L1PB1 LINE L1 5611 5794 -357 * 452 93 39 50 chrY 13304227 13304409 -11408670 + (TA)n Simple_repeat Simple_repeat 1 180 0 265 216 0 0 chrY 13304452 13304503 -11408576 - L1P5 LINE L1 -283 5868 5818 475 90 18 58 chrY 13304518 13304745 -11408334 + (TA)n Simple_repeat Simple_repeat 1 217 0 1845 185 11 3 chrY 13304748 13305111 -11407968 + L1PB1 LINE L1 5782 6147 -4 214 95 48 0 chrY 13305192 13305234 -11407845 + CT-rich Low_complexity Low_complexity 3 46 0 310 328 20 20 chrY 13305242 13305440 -11407639 - MLT1C LTR MaLR -162 305 108 327 317 10 0 chrY 13306194 13306298 -11406781 - MER81 DNA DNA 0 114 10 387 229 6 33 chrY 13306538 13306721 -11406358 + (CCTA)n Simple_repeat Simple_repeat 2 179 0 302 237 8 0 chrY 13306813 13306931 -11406148 + (CCTA)n Simple_repeat Simple_repeat 4 122 0 479 269 12 9 chrY 13306946 13307298 -11405781 + (CCTA)n Simple_repeat Simple_repeat 1 353 0 366 231 0 0 chrY 13307315 13307432 -11405647 + (CCTA)n Simple_repeat Simple_repeat 1 117 0 235 179 13 26 chrY 13307469 13307547 -11405532 + (CCTA)n Simple_repeat Simple_repeat 1 77 0 2021 158 0 0 chrY 13309294 13309592 -11403487 - AluY SINE Alu -13 298 1 29 0 0 0 chrY 13309688 13309717 -11403362 + AT_rich Low_complexity Low_complexity 1 29 0 488 323 121 50 chrY 13309732 13309812 -11403267 + L2 LINE L2 209 282 -3032 767 42 0 0 chrY 13309812 13309907 -11403172 - L1PA5 LINE L1 -7 6147 6053 488 323 121 50 chrY 13309907 13310263 -11402816 + L2 LINE L2 282 676 -2638 329 261 115 91 chrY 13310289 13310454 -11402625 - MER5B DNA MER1_type -7 171 3 284 286 118 8 chrY 13310455 13310574 -11402505 + L2 LINE L2 696 827 -2487 2851 158 9 17 chrY 13311504 13312041 -11401038 - L1PB1 LINE L1 -8 6143 5611 1675 210 43 26 chrY 13312042 13312583 -11400496 + MLT2A2 LTR ERVL 1 554 0 818 109 23 0 chrY 13312583 13312711 -11400368 - L1P5 LINE L1 -537 5614 5484 2218 55 7 4 chrY 13312738 13313010 -11400069 - AluY SINE Alu -2 309 37 198 292 112 56 chrY 13314962 13315123 -11397956 + MIR SINE MIR 22 191 -71 601 363 32 7 chrY 13315340 13315605 -11397474 + L2 LINE L2 1168 1442 -1872 1718 160 149 11 chrY 13315605 13315981 -11397098 - MSTA LTR MaLR 0 428 1 601 363 32 7 chrY 13315981 13315999 -11397080 + L2 LINE L2 1442 1458 -1856 882 205 14 31 chrY 13316135 13316401 -11396678 - MLT2B1 LTR ERVL 0 520 186 385 167 15 0 chrY 13366412 13366478 -11346601 - LTR29 LTR ERV1 -235 387 321 626 259 30 65 chrY 13366521 13366858 -11346221 - MLT1E2 LTR MaLR -87 522 216 1683 181 16 108 chrY 13366862 13367034 -11346045 - Tigger7 DNA MER2_type 0 2487 2301 2293 159 20 6 chrY 13367034 13367387 -11345692 + THE1B LTR MaLR 5 362 -2 1683 181 16 108 chrY 13367387 13367651 -11345428 - Tigger7 DNA MER2_type -186 2301 2091 6487 200 17 37 chrY 13367651 13370001 -11343078 + L1P3 LINE L1 3 2348 -4113 5600 125 8 16 chrY 13370001 13370878 -11342201 + L1PA8A LINE L1 5262 6131 0 522 224 6 12 chrY 13370882 13371052 -11342027 + GA-rich Low_complexity Low_complexity 2 170 0 235 260 0 0 chrY 13371052 13371102 -11341977 - Tigger7 DNA MER2_type -379 2208 2159 963 220 9 27 chrY 13371166 13371389 -11341690 - MLT1E2 LTR MaLR -407 219 1 1109 181 68 17 chrY 13371670 13371907 -11341172 - MLT1B LTR MaLR -4 386 138 279 0 0 0 chrY 13371907 13371937 -11341142 + THE1A LTR MaLR 1 30 -325 448 176 14 0 chrY 13371937 13372011 -11341068 - AluJb SINE Alu -39 273 199 190 250 94 16 chrY 13372050 13372114 -11340965 + MIR SINE MIR 37 105 -157 199 263 25 12 chrY 13374184 13374264 -11338815 - MIR3 SINE MIR -3 205 125 478 288 0 0 chrY 13374340 13374490 -11338589 + FRAM SINE Alu 31 180 0 1338 204 0 4 chrY 13374726 13374976 -11338103 + AluJb SINE Alu 25 273 -39 840 166 10 21 chrY 13375151 13375568 -11337511 + CT-rich Low_complexity Low_complexity 1 412 0 38132 63 13 2 chrY 13375855 13381947 -11331132 + L1PA4 LINE L1 1 6152 -3 1947 156 3 0 chrY 13383287 13383589 -11329490 + AluSc SINE Alu 5 307 -2 1645 189 7 7 chrY 13383649 13383958 -11329121 + AluSx SINE Alu 1 309 0 25 31 0 0 chrY 13384835 13384867 -11328212 + AT_rich Low_complexity Low_complexity 1 32 0 10197 64 6 1 chrY 13385480 13386783 -11326296 - L1P LINE L1 -1482 4664 3355 7900 41 1 0 chrY 13386784 13388325 -11324754 + L1PA3 LINE L1 4614 6155 0 886 259 169 9 chrY 13388340 13388416 -11324663 - LTR52 LTR ERVL -1 420 358 258 105 0 0 chrY 13388416 13388454 -11324625 + (CA)n Simple_repeat Simple_repeat 2 39 0 886 259 169 9 chrY 13388454 13388725 -11324354 - LTR52 LTR ERVL -63 358 17 1100 205 0 68 chrY 13388728 13388991 -11324088 + AluJo SINE Alu 1 245 -67 1102 75 19 0 chrY 13389015 13389176 -11323903 + (GAAA)n Simple_repeat Simple_repeat 2 165 0 683 191 17 6 chrY 13389203 13389381 -11323698 + GA-rich Low_complexity Low_complexity 1 180 0 437 180 0 20 chrY 13389401 13389501 -11323578 + GA-rich Low_complexity Low_complexity 1 98 0 998 184 0 0 chrY 13389619 13389787 -11323292 - MLT2B1 LTR ERVL -340 180 13 594 329 82 50 chrY 13390134 13390263 -11322816 + L2 LINE L2 1525 1648 -1666 1421 229 0 17 chrY 13390263 13390560 -11322519 - AluJo SINE Alu -20 292 1 594 329 82 50 chrY 13390560 13391150 -11321929 + L2 LINE L2 1648 2267 -1047 1190 181 29 47 chrY 13391282 13391532 -11321547 - L1MA4 LINE L1 -1 6299 6053 1338 241 13 23 chrY 13391532 13391835 -11321244 - AluJo SINE Alu -1 301 2 1190 181 29 47 chrY 13391835 13391860 -11321219 - L1MA4 LINE L1 -247 6053 6029 1240 170 5 5 chrY 13392237 13392443 -11320636 - AluSc SINE Alu -21 288 83 508 325 119 36 chrY 13392443 13393214 -11319865 + L2 LINE L2 2441 3278 -35 425 62 35 0 chrY 13393228 13393302 -11319777 + L1PA8A LINE L1 5685 5767 -364 186 71 0 0 chrY 13393307 13393335 -11319744 + (TG)n Simple_repeat Simple_repeat 2 29 0 204 200 0 0 chrY 13393371 13393416 -11319663 + (CATA)n Simple_repeat Simple_repeat 2 46 0 1365 148 36 12 chrY 13393421 13393671 -11319408 + L1PB1 LINE L1 5785 6040 -111 3840 144 103 111 chrY 13394182 13395571 -11317508 + pTR5 LTR ERV1 743 2438 0 882 139 12 48 chrY 13398966 13399131 -11313948 + MER4A LTR ERV1 390 548 -116 * 1348 109 0 35 chrY 13399130 13399331 -11313748 + Charlie3 DNA MER1_type 2513 2706 -4 812 318 8 11 chrY 13399331 13399705 -11313374 + L1ME1 LINE L1 5587 5959 -207 252 267 42 42 chrY 13399733 13399853 -11313226 + L1MA10 LINE L1 6191 6310 -24 1894 159 3 0 chrY 13400226 13400516 -11312563 + AluSp SINE Alu 1 291 -22 2426 146 65 21 chrY 13401200 13401631 -11311448 - L1PA16 LINE L1 -5 6161 5712 989 205 89 35 chrY 13402302 13402560 -11310519 + L1PA16 LINE L1 5879 6150 -16 183 80 0 0 chrY 13403829 13403854 -11309225 + (TTTTG)n Simple_repeat Simple_repeat 3 27 0 285 269 79 27 chrY 13404863 13404996 -11308083 + MIR SINE MIR 32 172 -36 43 56 0 0 chrY 13405269 13405340 -11307739 + AT_rich Low_complexity Low_complexity 1 71 0 1107 174 15 20 chrY 13405370 13405565 -11307514 - AluJo SINE Alu -17 295 102 288 164 49 33 chrY 13405566 13405627 -11307452 - AluJo SINE Alu -160 142 81 230 271 62 52 chrY 13406382 13406574 -11306505 + LTR37B LTR ERV1 5 198 -270 2281 201 8 53 chrY 13406777 13407249 -11305830 + MLT2A2 LTR ERVL 1 451 -2 4812 146 48 7 chrY 13407685 13408503 -11304576 + L1PA15 LINE L1 5313 6163 -2 1207 232 4 8 chrY 13409895 13410145 -11302934 - AluJo SINE Alu -40 272 24 3591 181 36 9 chrY 13410276 13410939 -11302140 + L1PA16 LINE L1 5477 6157 -9 23 33 0 0 chrY 13412111 13412141 -11300938 + AT_rich Low_complexity Low_complexity 1 30 0 43698 33 21 3 chrY 13412178 13418221 -11294858 - L1PA2 LINE L1 0 6155 1 212 323 0 0 chrY 13419231 13419293 -11293786 - MIR SINE MIR -75 187 126 685 249 33 17 chrY 13419847 13420028 -11293051 - MER58A DNA MER1_type -24 200 17 198 314 0 0 chrY 13420317 13420368 -11292711 + L2 LINE L2 3214 3264 -8 29 0 0 0 chrY 13420612 13420641 -11292438 + AT_rich Low_complexity Low_complexity 1 29 0 23 78 0 0 chrY 13421031 13421082 -11291997 + AT_rich Low_complexity Low_complexity 1 51 0 207 172 23 23 chrY 13421089 13421176 -11291903 + A-rich Low_complexity Low_complexity 3 89 0 2281 80 0 20 chrY 13422729 13423028 -11290051 - AluY SINE Alu -13 298 6 27 0 0 0 chrY 13423040 13423067 -11290012 + AT_rich Low_complexity Low_complexity 1 27 0 2363 73 3 13 chrY 13423194 13423508 -11289571 - AluY SINE Alu 0 311 1 1567 205 0 0 chrY 13423918 13424206 -11288873 + AluSx SINE Alu 11 298 -14 250 255 13 121 chrY 13425065 13425222 -11287857 - MIR SINE MIR -16 246 107 800 137 78 65 chrY 13425283 13425436 -11287643 - FAM SINE Alu -21 164 10 306 347 11 0 chrY 13426231 13426326 -11286753 - L2 LINE L2 -1 3271 3176 1390 171 38 51 chrY 13426353 13426645 -11286434 - AluJo SINE Alu -20 292 5 252 0 0 0 chrY 13426763 13426791 -11286288 + (T)n Simple_repeat Simple_repeat 1 28 0 2938 0 0 0 chrY 13426828 13427139 -11285940 - AluY SINE Alu 0 311 1 1056 190 82 51 chrY 13427155 13427471 -11285608 - L1MB8 LINE L1 -9 6169 5844 2878 6 0 3 chrY 13428813 13429125 -11283954 - AluY SINE Alu 0 311 1 1001 170 0 24 chrY 13432246 13432411 -11280668 + AluSx SINE Alu 1 161 -151 30 83 0 0 chrY 13437620 13437692 -11275387 + AT_rich Low_complexity Low_complexity 1 72 0 315 191 16 0 chrY 13438246 13438309 -11274770 + LTR29 LTR ERV1 493 556 -66 195 125 0 0 chrY 13438347 13438387 -11274692 + (TG)n Simple_repeat Simple_repeat 2 41 0 438 240 33 8 chrY 13439611 13439732 -11273347 - MER3 DNA MER1_type -6 203 80 1207 264 33 43 chrY 13439745 13440118 -11272961 - MLT1C LTR MaLR -5 462 92 2054 152 37 55 chrY 13440118 13440552 -11272527 - MSTA LTR MaLR 0 428 3 1207 264 33 43 chrY 13440552 13440598 -11272481 - MLT1C LTR MaLR -375 92 47 2270 245 223 14 chrY 13440598 13441230 -11271849 + MER52A LTR ERV1 1 764 -991 2147 245 53 12 chrY 13441230 13441724 -11271355 + MER52A LTR ERV1 1242 1755 0 2057 110 12 38 chrY 13442016 13442370 -11270709 + AluSx SINE Alu 1 346 0 262 193 0 18 chrY 13443011 13443068 -11270011 - MLT1B LTR MaLR -2 388 333 23 54 0 0 chrY 13443146 13443183 -11269896 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chrY 13443190 13443211 -11269868 + AT_rich Low_complexity Low_complexity 1 21 0 51 42 0 0 chrY 13443302 13443374 -11269705 + AT_rich Low_complexity Low_complexity 1 72 0 29 60 0 0 chrY 13443446 13443496 -11269583 + AT_rich Low_complexity Low_complexity 1 50 0 27 49 0 0 chrY 13443522 13443563 -11269516 + AT_rich Low_complexity Low_complexity 1 41 0 22 80 0 0 chrY 13443758 13443808 -11269271 + AT_rich Low_complexity Low_complexity 1 50 0 39 95 0 0 chrY 13443842 13443958 -11269121 + AT_rich Low_complexity Low_complexity 1 116 0 31 0 0 0 chrY 13444014 13444045 -11269034 + AT_rich Low_complexity Low_complexity 1 31 0 1057 215 89 72 chrY 13444082 13444473 -11268606 - MLT1C LTR MaLR -69 398 1 237 148 0 0 chrY 13444665 13444719 -11268360 - L1PA15 LINE L1 0 6165 6112 592 158 150 0 chrY 13444963 13445083 -11267996 + MLT1A1 LTR MaLR 1 138 -227 3204 194 82 90 chrY 13445127 13445846 -11267233 - MER21A LTR ERV1 -38 893 181 1629 167 53 10 chrY 13445846 13446145 -11266934 + AluJb SINE Alu 1 312 0 3204 194 82 90 chrY 13446145 13446305 -11266774 - MER21A LTR ERV1 -750 181 21 189 0 0 0 chrY 13446312 13446333 -11266746 + (TA)n Simple_repeat Simple_repeat 1 21 0 874 232 21 0 chrY 13446373 13446563 -11266516 + MLT1A1 LTR MaLR 172 365 0 798 217 44 0 chrY 13448196 13448376 -11264703 - MER20 DNA MER1_type -1 218 31 9548 29 0 0 chrY 13449045 13450953 -11262126 - L1PA2 LINE L1 -3 6152 4244 3040 20 3 0 chrY 13450953 13451304 -11261775 + L1PA2 LINE L1 3888 4239 -1907 25 0 0 0 chrY 13451656 13451681 -11261398 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chrY 13451803 13451827 -11261252 + AT_rich Low_complexity Low_complexity 1 24 0 187 295 309 7 chrY 13452343 13452482 -11260597 - MER5A DNA MER1_type 0 189 9 220 192 19 19 chrY 13452722 13452774 -11260305 + (TA)n Simple_repeat Simple_repeat 2 53 0 314 197 0 53 chrY 13452794 13452870 -11260209 + Tigger2a DNA MER2_type 1 72 -362 1651 187 47 39 chrY 13452927 13453222 -11259857 + Tigger2a DNA MER2_type 79 379 -2339 1882 153 4 0 chrY 13453222 13453503 -11259576 + AluSx SINE Alu 3 284 -28 1651 187 47 39 chrY 13453503 13453570 -11259509 + Tigger2a DNA MER2_type 379 444 0 360 239 54 6 chrY 13453591 13453834 -11259245 + (TA)n Simple_repeat Simple_repeat 1 254 0 798 145 164 0 chrY 13453857 13454016 -11259063 + L1MB3 LINE L1 5662 5847 -334 1715 174 35 0 chrY 13454420 13454702 -11258377 - AluSx SINE Alu -16 296 5 308 294 55 20 chrY 13455252 13455398 -11257681 + MER3 DNA MER1_type 6 156 -53 1164 182 32 4 chrY 13455398 13455436 -11257643 - L1MB3 LINE L1 -19 6164 6129 2597 153 2 30 chrY 13455436 13455462 -11257617 - L1PB4 LINE L1 -7 6149 6124 2221 138 11 35 chrY 13455462 13455668 -11257411 - THE1B LTR MaLR -2 362 166 1673 184 11 3 chrY 13455668 13455995 -11257084 + AluSq SINE Alu 1 329 0 2221 138 11 35 chrY 13455995 13456158 -11256921 - THE1B LTR MaLR -198 166 1 2597 153 2 30 chrY 13456158 13456600 -11256479 - L1PB4 LINE L1 -32 6124 5694 1164 182 32 4 chrY 13456600 13456814 -11256265 - L1MB3 LINE L1 -54 6129 5905 1634 210 30 3 chrY 13456814 13457147 -11255932 - MER7A DNA MER2_type 0 346 7 250 193 53 0 chrY 13457195 13457252 -11255827 + T-rich Low_complexity Low_complexity 3 62 0 1216 258 4 4 chrY 13457252 13457527 -11255552 - AluJb SINE Alu -32 280 6 1537 166 100 0 chrY 13457533 13457834 -11255245 - L1MB3 LINE L1 -308 5872 5542 1764 196 37 6 chrY 13458305 13458658 -11254421 + MLT1A1 LTR MaLR 1 364 -1 208 261 0 43 chrY 13458906 13458975 -11254104 + (CA)n Simple_repeat Simple_repeat 1 66 0 742 125 0 0 chrY 13459633 13459745 -11253334 - L1PA7 LINE L1 -5 6149 6038 566 186 32 8 chrY 13459750 13459874 -11253205 - MLT1C LTR MaLR -331 136 10 1606 140 51 94 chrY 13460064 13460456 -11252623 + THE1C LTR MaLR 1 375 0 212 111 22 0 chrY 13461221 13461266 -11251813 + (TG)n Simple_repeat Simple_repeat 2 47 0 1114 255 119 17 chrY 13461266 13461685 -11251394 + MLT1C LTR MaLR 6 467 0 24 77 0 0 chrY 13462168 13462220 -11250859 + AT_rich Low_complexity Low_complexity 1 52 0 25 100 0 8 chrY 13462472 13462483 -11250596 + AT_rich Low_complexity Low_complexity 1 11 -108 705 167 0 15 chrY 13462483 13462615 -11250464 - FLAM_C SINE Alu -3 130 1 25 100 0 8 chrY 13462615 13462723 -11250356 + AT_rich Low_complexity Low_complexity 11 119 0 233 178 0 0 chrY 13462857 13462902 -11250177 - L1MD2 LINE L1 -17 6342 6298 1062 283 69 58 chrY 13462980 13463545 -11249534 - L1MDa LINE L1 -5377 1163 593 292 320 71 82 chrY 13463604 13463898 -11249181 - MER68 LTR ERV1 -242 320 30 445 269 59 70 chrY 13464329 13464585 -11248494 - MLT1L LTR MaLR -355 260 8 750 84 0 0 chrY 13465518 13465625 -11247454 + (TAGA)n Simple_repeat Simple_repeat 4 110 0 2034 178 9 53 chrY 13465626 13466075 -11247004 + Tigger2a DNA MER2_type 2 430 -4 269 164 14 0 chrY 13466077 13466150 -11246929 + (TA)n Simple_repeat Simple_repeat 1 74 0 617 146 46 6 chrY 13466471 13466784 -11246295 + (TCTA)n Simple_repeat Simple_repeat 1 325 0 548 116 33 44 chrY 13466847 13467028 -11246051 + (TCTA)n Simple_repeat Simple_repeat 1 179 0 231 291 34 54 chrY 13467539 13467687 -11245392 + L2 LINE L2 3086 3230 -83 22 0 0 0 chrY 13468129 13468151 -11244928 + AT_rich Low_complexity Low_complexity 1 22 0 1233 238 37 13 chrY 13468153 13468451 -11244628 + AluJo SINE Alu 1 305 -7 261 0 0 0 chrY 13468790 13468819 -11244260 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 261 301 9 9 chrY 13469051 13469164 -11243915 + CT-rich Low_complexity Low_complexity 2 114 0 316 116 14 14 chrY 13469450 13469519 -11243560 + (TAGA)n Simple_repeat Simple_repeat 4 72 0 411 179 52 35 chrY 13469612 13469785 -11243294 + (TAGA)n Simple_repeat Simple_repeat 4 179 0 249 201 27 27 chrY 13469827 13469976 -11243103 + (TAGA)n Simple_repeat Simple_repeat 3 151 0 373 205 48 0 chrY 13470036 13470119 -11242960 + AluJb SINE Alu 53 139 -163 182 370 0 0 chrY 13470224 13470278 -11242801 + L2 LINE L2 3217 3270 -2 704 233 26 1 chrY 13470307 13470513 -11242566 + L1MA4 LINE L1 5647 5850 -306 2058 116 3 7 chrY 13470693 13470994 -11242085 - AluSq SINE Alu -2 311 12 229 159 0 45 chrY 13471229 13471273 -11241806 + L2 LINE L2 3272 3313 0 3394 188 57 11 chrY 13471704 13471767 -11241312 - L1MA4 LINE L1 -5 6295 6236 1581 168 52 35 chrY 13471767 13472136 -11240943 + THE1C LTR MaLR 1 375 0 3394 188 57 11 chrY 13472136 13472828 -11240251 - L1MA4 LINE L1 -64 6236 5505 22 35 0 0 chrY 13473351 13473380 -11239699 + AT_rich Low_complexity Low_complexity 1 29 0 28 0 0 0 chrY 13474522 13474550 -11238529 + AT_rich Low_complexity Low_complexity 1 28 0 2769 101 16 7 chrY 13474734 13475159 -11237920 - L1MA1 LINE L1 -1 6301 5873 710 102 51 42 chrY 13475159 13475277 -11237802 + L1M1 LINE L1 5660 5778 -524 279 54 0 0 chrY 13475698 13475735 -11237344 + (TG)n Simple_repeat Simple_repeat 2 38 0 1498 201 7 20 chrY 13476082 13476380 -11236699 + AluJo SINE Alu 1 294 -18 806 296 79 38 chrY 13476842 13477861 -11235218 - L1MC/D LINE L1 -572 5592 4562 263 306 83 8 chrY 13478051 13478172 -11234907 - L1MC/D LINE L1 -1842 4304 4175 220 126 63 39 chrY 13478182 13478309 -11234770 + (TCTA)n Simple_repeat Simple_repeat 4 133 0 583 122 38 0 chrY 13478366 13478497 -11234582 + (TCTA)n Simple_repeat Simple_repeat 1 136 0 1486 274 58 63 chrY 13478538 13479717 -11233362 - L1MC/D LINE L1 -2012 4134 2961 1499 192 17 17 chrY 13479721 13480018 -11233061 + MER61A LTR ERV1 47 343 0 499 306 0 0 chrY 13480191 13480384 -11232695 - L1MC/D LINE L1 -3603 2543 2351 580 173 8 75 chrY 13480397 13480530 -11232549 - MER31A LTR ERV1 -361 124 1 1885 213 55 2 chrY 13480566 13480680 -11232399 + LOR1b LTR ERV1 40 147 -314 1578 173 0 0 chrY 13480680 13480928 -11232151 + AluSx SINE Alu 2 249 -63 1885 213 55 2 chrY 13480928 13481212 -11231867 + LOR1b LTR ERV1 147 459 -2 3461 201 27 27 chrY 13481379 13482158 -11230921 + MER4E LTR ERV1 1 779 0 640 112 26 17 chrY 13482378 13482494 -11230585 - LTR7 LTR ERV1 0 450 334 4140 204 24 2 chrY 13482496 13483387 -11229692 - HERVH LTR ERV1 -746 6967 6058 1885 214 9 0 chrY 13483375 13483800 -11229279 - HERVH LTR ERV1 -1959 5754 5326 * 762 119 0 0 chrY 13483803 13483912 -11229167 - HERVH LTR ERV1 -2350 5363 5255 4965 146 3 8 chrY 13483915 13484697 -11228382 - LTR17 LTR ERV1 -2 778 1 1873 134 0 0 chrY 13484697 13484989 -11228090 - HERV17 LTR ERV1 0 8626 8335 262 56 0 0 chrY 13484982 13485018 -11228061 - HERV17 LTR ERV1 -1081 7545 7510 * 4655 62 2 3 chrY 13485011 13485627 -11227452 - HERV17 LTR ERV1 -2607 6019 5405 4510 113 3 0 chrY 13485606 13486258 -11226821 - HERV17 LTR ERV1 -4872 3754 3101 * 1015 93 0 11 chrY 13486238 13486443 -11226636 + HERV17 LTR ERV1 475 709 -7917 * 1829 167 22 14 chrY 13486715 13487080 -11225999 + HERV17 LTR ERV1 703 1070 -7556 3122 142 10 11 chrY 13487086 13487609 -11225470 - HERV17 LTR ERV1 -8103 523 2 2418 203 2 0 chrY 13487609 13488048 -11225031 - LTR17 LTR ERV1 0 780 341 401 183 0 0 chrY 13488041 13488112 -11224967 - HERVH LTR ERV1 -2823 4890 4820 * 1901 151 0 15 chrY 13488107 13488445 -11224634 - LTR17 LTR ERV1 -443 337 5 7606 144 2 3 chrY 13488448 13489715 -11223364 - HERVH LTR ERV1 -2454 5259 3995 279 204 0 0 chrY 13489781 13489835 -11223244 - HERVH LTR ERV1 -3720 3993 3940 180 255 0 43 chrY 13489925 13489972 -11223107 - L2 LINE L2 -182 3090 3046 416 187 0 0 chrY 13489972 13490047 -11223032 - HERVH LTR ERV1 -4449 3264 3190 288 0 0 0 chrY 13490047 13490079 -11223000 + (T)n Simple_repeat Simple_repeat 1 32 0 12345 174 14 14 chrY 13490079 13492980 -11220099 - HERVH LTR ERV1 -4519 3194 1 1937 111 69 6 chrY 13492980 13493348 -11219731 - LTR7 LTR ERV1 0 450 1 2135 147 38 2 chrY 13493349 13493373 -11219706 - HERVH LTR ERV1 -1 7712 7690 189 0 0 0 chrY 13493373 13493394 -11219685 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 2135 147 38 2 chrY 13493394 13493764 -11219315 - HERVH LTR ERV1 -23 7690 7304 1869 115 89 1 chrY 13493765 13494119 -11218960 - LTR7 LTR ERV1 0 450 1 668 218 19 6 chrY 13494273 13494429 -11218650 + LTR8A LTR ERV1 1 158 -569 1280 171 88 11 chrY 13494438 13494701 -11218378 - MER61B LTR ERV1 -29 396 114 1657 206 25 82 chrY 13494708 13495197 -11217882 + LTR8 LTR ERV1 231 691 0 2330 147 33 27 chrY 13495535 13496135 -11216944 - MER4E LTR ERV1 -8 758 1 1017 211 72 4 chrY 13496289 13496554 -11216525 - MER6 DNA MER2_type 0 865 583 2545 164 19 2 chrY 13496560 13497037 -11216042 + MER41B LTR ERV1 110 594 -41 22 88 0 0 chrY 13497618 13497675 -11215404 + AT_rich Low_complexity Low_complexity 1 57 0 5297 158 29 24 chrY 13497723 13498969 -11214110 + L1MA3 LINE L1 5062 6305 0 304 192 0 0 chrY 13500052 13500104 -11212975 - L2 LINE L2 -7 3265 3214 666 156 0 0 chrY 13500506 13500615 -11212464 - FLAM_A SINE Alu -4 138 30 2309 155 15 8 chrY 13502012 13502411 -11210668 + MER57A LTR ERV1 2 403 0 364 247 33 73 chrY 13502666 13502753 -11210326 - MER45A DNA AcHobo -1403 178 98 1059 170 211 68 chrY 13502753 13503018 -11210061 + AluSq SINE Alu 1 303 0 364 247 33 73 chrY 13503018 13503080 -11209999 - MER45A DNA AcHobo -1483 98 35 3166 177 145 27 chrY 13503367 13504106 -11208973 - LTR1B LTR ERV1 0 826 1 1304 204 53 20 chrY 13504193 13504591 -11208488 + L1 LINE L1 4749 5159 -987 324 181 14 14 chrY 13504598 13504670 -11208409 + L1PB3 LINE L1 6080 6151 -3 665 303 0 5 chrY 13504699 13504894 -11208185 - MLT1A2 LTR MaLR 0 374 181 517 185 34 8 chrY 13504894 13505138 -11207941 + GA-rich Low_complexity Low_complexity 1 250 0 248 136 25 25 chrY 13505168 13505249 -11207830 + GA-rich Low_complexity Low_complexity 2 82 0 793 170 12 36 chrY 13505268 13505433 -11207646 - MLT1A2 LTR MaLR -213 161 1 3623 116 0 87 chrY 13505910 13506602 -11206477 - MER4A LTR ERV1 0 664 33 195 69 0 0 chrY 13506614 13506643 -11206436 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 30 0 0 0 chrY 13506643 13506673 -11206406 + AT_rich Low_complexity Low_complexity 1 30 0 1885 173 0 7 chrY 13507589 13507884 -11205195 - AluSc SINE Alu -16 293 1 691 259 0 12 chrY 13507886 13508052 -11205027 - FRAM SINE Alu -2 164 1 194 244 73 61 chrY 13508903 13508985 -11204094 + L2 LINE L2 3227 3309 -4 734 244 63 80 chrY 13509144 13509493 -11203586 + Charlie1a DNA MER1_type 1 343 -1112 * 2345 200 53 90 chrY 13509486 13509789 -11203290 + Charlie1a DNA MER1_type 464 777 -1984 2138 89 6 56 chrY 13509789 13510113 -11202966 + AluY SINE Alu 1 308 -3 2345 200 53 90 chrY 13510113 13510403 -11202676 + Charlie1a DNA MER1_type 777 1076 -1685 2109 83 40 17 chrY 13510403 13510705 -11202374 + AluY SINE Alu 3 311 0 2345 200 53 90 chrY 13510705 13510784 -11202295 + Charlie1a DNA MER1_type 1076 1156 -1605 1174 180 0 151 chrY 13510784 13511154 -11201925 + AluJb SINE Alu 2 319 0 2345 200 53 90 chrY 13511154 13511238 -11201841 + Charlie1a DNA MER1_type 1156 1242 -1519 2063 145 0 0 chrY 13511238 13511542 -11201537 + AluSx SINE Alu 1 304 -8 2345 200 53 90 chrY 13511542 13511808 -11201271 + Charlie1a DNA MER1_type 1242 1454 -1 1565 220 64 10 chrY 13512182 13512573 -11200506 + MER65C LTR ERV1 16 427 -34 197 407 52 30 chrY 13512979 13513114 -11199965 - L2 LINE L2 -8 3264 3127 214 215 25 0 chrY 13514163 13514242 -11198837 + (TA)n Simple_repeat Simple_repeat 1 81 0 810 245 14 5 chrY 13514313 13514521 -11198558 - MER6B DNA MER2_type 0 210 1 300 53 0 0 chrY 13514527 13514565 -11198514 + (TA)n Simple_repeat Simple_repeat 1 38 0 300 264 46 0 chrY 13514598 13514685 -11198394 + L1MC4 LINE L1 6612 6702 -1340 1504 181 11 4 chrY 13517001 13517266 -11195813 - AluSx SINE Alu -45 267 1 492 177 0 10 chrY 13519171 13519267 -11193812 + MLT1B LTR MaLR 12 106 -284 2628 87 16 5 chrY 13520039 13520409 -11192670 - L1PA7 LINE L1 -1 6153 5780 240 358 11 0 chrY 13521964 13522059 -11191020 + MER115 DNA AcHobo 158 253 -440 399 297 87 5 chrY 13522461 13522680 -11190399 + MER115 DNA AcHobo 404 640 -53 234 156 0 0 chrY 13522953 13522998 -11190081 + (TTATG)n Simple_repeat Simple_repeat 5 49 0 423 171 46 34 chrY 13523019 13523194 -11189885 + (TTATG)n Simple_repeat Simple_repeat 1 177 0 181 176 46 46 chrY 13523232 13523340 -11189739 + (TTATG)n Simple_repeat Simple_repeat 2 109 0 681 76 0 0 chrY 13523346 13523451 -11189628 + (CTATG)n Simple_repeat Simple_repeat 1 105 0 3364 142 96 81 chrY 13523476 13524250 -11188829 - LTR1 LTR ERV1 0 785 1 252 0 0 0 chrY 13524297 13524394 -11188685 + (CTATG)n Simple_repeat Simple_repeat 1 125 0 252 0 0 0 chrY 13524394 13524422 -11188657 + (CTATG)n Simple_repeat Simple_repeat 3 30 0 386 183 34 34 chrY 13524476 13524651 -11188428 + (TTATG)n Simple_repeat Simple_repeat 2 176 0 751 183 16 0 chrY 13525533 13525659 -11187420 + FLAM_C SINE Alu 1 128 -5 1174 242 48 21 chrY 13525672 13525961 -11187118 + AluJo SINE Alu 2 298 -4 469 324 99 11 chrY 13527483 13527745 -11185334 - L1M4 LINE L1 -2173 3973 3689 27 0 0 0 chrY 13527769 13527796 -11185283 + AT_rich Low_complexity Low_complexity 1 27 0 849 187 27 0 chrY 13528120 13528307 -11184772 - L1MA5 LINE L1 -163 6137 5946 1872 190 2 42 chrY 13528439 13528845 -11184234 + MLT1B LTR MaLR 1 390 0 25 31 0 0 chrY 13528974 13529006 -11184073 + AT_rich Low_complexity Low_complexity 1 32 0 25 51 0 0 chrY 13529552 13529591 -11183488 + AT_rich Low_complexity Low_complexity 1 39 0 302 147 37 46 chrY 13529626 13529735 -11183344 + (TA)n Simple_repeat Simple_repeat 1 108 0 274 131 40 57 chrY 13529751 13529926 -11183153 + (TA)n Simple_repeat Simple_repeat 1 172 0 238 254 0 0 chrY 13529938 13529993 -11183086 + (CA)n Simple_repeat Simple_repeat 2 56 0 1482 228 0 14 chrY 13530091 13530385 -11182694 + AluJo SINE Alu 3 292 -20 1217 187 42 0 chrY 13530391 13530653 -11182426 - Tigger3(Golem) DNA MER2_type -2713 316 44 199 245 204 10 chrY 13530837 13530935 -11182144 + MIR SINE MIR 24 140 -68 212 0 36 0 chrY 13531198 13531226 -11181853 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 1828 160 24 29 chrY 13531337 13531711 -11181368 + MSTA LTR MaLR 1 372 -56 456 248 0 78 chrY 13531747 13531900 -11181179 - MER20 DNA MER1_type -78 141 1 482 307 94 34 chrY 13532388 13532655 -11180424 - MLT1J LTR MaLR -158 353 71 2842 7 0 0 chrY 13532872 13533177 -11179902 + AluYb8 SINE Alu 13 317 -1 482 224 12 12 chrY 13533358 13533528 -11179551 + CT-rich Low_complexity Low_complexity 3 172 0 852 267 67 28 chrY 13533665 13534107 -11178972 + L1ME1 LINE L1 5683 6157 -9 1920 153 20 0 chrY 13534262 13534562 -11178517 + AluSg SINE Alu 1 306 -4 2119 110 0 0 chrY 13534738 13535047 -11178032 + AluY SINE Alu 1 309 0 1865 211 54 18 chrY 13535113 13535558 -11177521 + LOR1b LTR ERV1 1 461 0 4141 134 92 53 chrY 13536013 13536804 -11176275 - LTR12 LTR ERV1 0 826 5 5795 141 29 7 chrY 13536820 13538283 -11174796 - Harlequin LTR ERV1 0 8399 504 627 105 325 0 chrY 13538281 13538509 -11174570 - Harlequin LTR ERV1 -5755 1141 840 * 26189 116 22 14 chrY 13538506 13543620 -11169459 - Harlequin LTR ERV1 -1935 503 17 1377 198 66 34 chrY 13543625 13544065 -11169014 - pTR5 LTR ERV1 -1242 1196 743 290 293 104 19 chrY 13545880 13546139 -11166940 + L1M4 LINE L1 2676 2956 -3190 2916 171 35 42 chrY 13546214 13546569 -11166510 - L1MA4 LINE L1 -5 6295 5939 1919 158 3 13 chrY 13546569 13546879 -11166200 - AluSc SINE Alu -2 307 1 2916 171 35 42 chrY 13546879 13547260 -11165819 - L1MA4 LINE L1 -361 5939 5564 301 238 0 50 chrY 13548472 13548552 -11164527 + AluJ/FRAM SINE Alu 216 291 -11 201 39 0 0 chrY 13548584 13548610 -11164469 + (TTAGGG)n Simple_repeat Simple_repeat 1 26 0 351 0 0 0 chrY 13548800 13548839 -11164240 + (TA)n Simple_repeat Simple_repeat 1 39 0 207 0 0 0 chrY 13548838 13548861 -11164218 + (CA)n Simple_repeat Simple_repeat 2 24 0 * 6314 82 45 0 chrY 13549471 13550707 -11162372 - L1PA7 LINE L1 -18 6136 4870 1799 203 113 36 chrY 13550843 13551265 -11161814 + MLT2B2 LTR ERVL 1 466 -49 2023 217 23 2 chrY 13551265 13551739 -11161340 - L1PB4 LINE L1 -4 6152 5669 1799 203 113 36 chrY 13551739 13551794 -11161285 + MLT2B2 LTR ERVL 466 515 0 3567 46 0 0 chrY 13551876 13552310 -11160769 + L1PA4 LINE L1 5719 6152 -3 212 163 0 0 chrY 13552313 13552356 -11160723 + A-rich Low_complexity Low_complexity 1 43 0 23 54 0 0 chrY 13553058 13553095 -11159984 + AT_rich Low_complexity Low_complexity 1 37 0 1232 244 14 14 chrY 13553229 13553554 -11159525 + AluJo SINE Alu 1 325 0 1258 125 5 56 chrY 13554015 13554231 -11158848 - AluY SINE Alu -106 205 1 507 259 89 0 chrY 13554410 13554568 -11158511 + L1MB5 LINE L1 5452 5623 -557 1782 237 14 10 chrY 13554858 13555344 -11157735 + L1MB5 LINE L1 5619 6106 -68 2165 185 21 65 chrY 13557152 13557556 -11155523 - L1PA16 LINE L1 -2 6164 5788 1572 119 26 4 chrY 13557556 13557783 -11155296 - AluSq SINE Alu -2 311 80 2165 185 21 65 chrY 13557783 13557913 -11155166 - L1PA16 LINE L1 -378 5788 5654 379 289 122 51 chrY 13558312 13558665 -11154414 - L2 LINE L2 -2126 1188 811 462 36 0 0 chrY 13559203 13559259 -11153820 + (TA)n Simple_repeat Simple_repeat 2 57 0 806 228 21 13 chrY 13559342 13559579 -11153500 - L1MA7 LINE L1 -2 6289 6051 350 262 0 6 chrY 13559585 13559705 -11153374 - L1MB4 LINE L1 -15 6165 6050 21 71 0 0 chrY 13559721 13559763 -11153316 + AT_rich Low_complexity Low_complexity 1 42 0 358 340 14 0 chrY 13561345 13561492 -11151587 + MLT1C LTR MaLR 316 464 -3 743 231 31 9 chrY 13561494 13561719 -11151360 - MER33 DNA MER1_type -84 240 11 2098 241 87 37 chrY 13561748 13562512 -11150567 + LTR1B LTR ERV1 1 1004 -16 2938 148 0 0 chrY 13562704 13563190 -11149889 - MER75 DNA T2_type -21 493 8 608 168 0 0 chrY 13563400 13563507 -11149572 + AluSp/q SINE Alu 197 303 -10 2103 139 0 0 chrY 13563507 13563810 -11149269 + AluY SINE Alu 3 305 -6 22 56 0 0 chrY 13563844 13563880 -11149199 + AT_rich Low_complexity Low_complexity 1 36 0 24 32 0 0 chrY 13563990 13564021 -11149058 + AT_rich Low_complexity Low_complexity 1 31 0 38529 70 12 2 chrY 13564021 13570115 -11142964 + L1PA4 LINE L1 1 6155 0 6617 64 5 0 chrY 13570115 13570966 -11142113 + L1PA5 LINE L1 5293 6154 0 25 75 0 0 chrY 13570966 13571019 -11142060 + AT_rich Low_complexity Low_complexity 1 53 0 328 281 35 6 chrY 13571118 13571289 -11141790 + (TA)n Simple_repeat Simple_repeat 1 176 0 524 223 20 14 chrY 13571292 13571440 -11141639 - Zaphod DNA AcHobo -3435 596 448 1892 166 3 3 chrY 13571441 13571774 -11141305 - AluSx SINE Alu 0 333 1 606 285 41 84 chrY 13571957 13572395 -11140684 - Zaphod DNA AcHobo -3600 431 13 538 120 0 20 chrY 13572468 13572568 -11140511 - L1MA4A LINE L1 -10 6293 6196 2313 113 3 0 chrY 13572607 13572908 -11140171 - AluY SINE Alu -9 302 1 193 282 0 0 chrY 13573198 13573237 -11139842 + L2 LINE L2 3219 3257 -15 192 125 0 0 chrY 13573241 13573273 -11139806 + (CAAT)n Simple_repeat Simple_repeat 1 32 0 323 283 0 10 chrY 13573483 13573582 -11139497 - MLT1C LTR MaLR -5 462 365 1187 245 31 25 chrY 13573808 13574163 -11138916 - MLT1C LTR MaLR -104 363 7 22 0 0 0 chrY 13576492 13576514 -11136565 + AT_rich Low_complexity Low_complexity 1 22 0 1489 221 0 7 chrY 13576651 13576932 -11136147 + AluJo SINE Alu 15 293 -19 25 65 0 0 chrY 13576950 13576996 -11136083 + AT_rich Low_complexity Low_complexity 1 46 0 1521 142 0 0 chrY 13577011 13577230 -11135849 - AluSg/x SINE Alu -8 304 86 328 186 6 180 chrY 13577407 13577511 -11135568 + MLT1B LTR MaLR 251 317 -73 1663 213 10 3 chrY 13577511 13577816 -11135263 + AluJb SINE Alu 1 307 -5 328 186 6 180 chrY 13577816 13577878 -11135201 + MLT1B LTR MaLR 317 388 -2 2689 158 106 30 chrY 13578140 13578286 -11134793 - L1MA8 LINE L1 -3 6288 6155 1274 238 46 4 chrY 13578286 13578567 -11134512 - AluJo SINE Alu -5 297 5 2689 158 106 30 chrY 13578567 13579061 -11134018 - L1MA8 LINE L1 -136 6155 5599 2885 6 0 0 chrY 13579365 13579676 -11133403 - AluYa5 SINE Alu 0 311 1 1791 186 7 0 chrY 13579676 13579972 -11133107 - AluSx SINE Alu -14 298 1 22 56 0 0 chrY 13580281 13580317 -11132762 + AT_rich Low_complexity Low_complexity 1 36 0 537 288 76 63 chrY 13580405 13580801 -11132278 + MLT1G1 LTR MaLR 16 391 -164 2474 192 16 99 chrY 13580811 13581341 -11131738 - LTR8 LTR ERV1 0 691 241 194 0 39 0 chrY 13581341 13581367 -11131712 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2474 192 16 99 chrY 13581367 13581590 -11131489 - LTR8 LTR ERV1 -450 241 1 1916 164 0 0 chrY 13581750 13582043 -11131036 - AluSx SINE Alu -19 293 1 285 308 67 78 chrY 13582598 13582972 -11130107 - L2 LINE L2 -1 3312 2943 21 0 0 0 chrY 13584503 13584524 -11128555 + AT_rich Low_complexity Low_complexity 1 21 0 1088 82 6 28 chrY 13585696 13585878 -11127201 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 1869 165 3 0 chrY 13585886 13586177 -11126902 - AluSq SINE Alu -21 292 1 378 197 0 0 chrY 13586186 13586262 -11126817 - L1PA10 LINE L1 -1 6167 6092 1711 151 20 46 chrY 13586496 13586751 -11126328 + LTR8A LTR ERV1 1 246 -481 2322 144 5 19 chrY 13586751 13587120 -11125959 + THE1B LTR MaLR 1 364 0 1711 151 20 46 chrY 13587120 13587209 -11125870 + LTR8A LTR ERV1 246 336 -391 2314 172 80 17 chrY 13587209 13587685 -11125394 - MER84 LTR ERV1 0 507 2 307 233 27 14 chrY 13587685 13587758 -11125321 - MER84 LTR ERVI -433 74 1 1337 177 101 73 chrY 13587758 13588143 -11124936 + LTR8A LTR ERV1 332 727 0 2605 202 68 15 chrY 13588379 13588969 -11124110 - LTR26E LTR ERV1 0 622 2 511 180 105 161 chrY 13589335 13589640 -11123439 + LTR8 LTR ERV1 1 256 -435 1135 210 61 111 chrY 13589662 13589987 -11123092 + LTR8A LTR ERV1 144 557 -170 2703 175 20 2 chrY 13589987 13590491 -11122588 - MER75 DNA T2_type 0 514 2 1135 210 61 111 chrY 13590491 13590654 -11122425 + LTR8A LTR ERV1 557 727 0 26226 128 23 24 chrY 13590663 13593144 -11119935 - L1PA7 LINE L1 0 6154 3671 288 70 0 0 chrY 13593144 13593187 -11119892 + (TTG)n Simple_repeat Simple_repeat 3 45 0 26226 128 23 24 chrY 13593187 13596044 -11117035 - L1PA7 LINE L1 -2483 3671 786 1853 142 36 17 chrY 13596067 13596369 -11116710 + AluSg SINE Alu 1 308 -2 25 0 0 0 chrY 13597377 13597402 -11115677 + AT_rich Low_complexity Low_complexity 1 25 0 1283 229 20 27 chrY 13597404 13597697 -11115382 - AluJb SINE Alu -21 291 1 2744 130 42 2 chrY 13597862 13598221 -11114858 - L1PB1 LINE L1 0 6151 5769 408 20 0 0 chrY 13598221 13598270 -11114809 + (TCTA)n Simple_repeat Simple_repeat 2 50 0 2744 130 42 2 chrY 13598270 13598365 -11114714 - L1PB1 LINE L1 -382 5769 5679 767 164 19 13 chrY 13598382 13598541 -11114538 - L1MB2 LINE L1 -8 6163 6004 287 281 12 0 chrY 13598547 13598629 -11114450 - L1MB3 LINE L1 -152 6031 5949 301 316 26 17 chrY 13599097 13599214 -11113865 + L1MC4 LINE L1 6586 6703 -1339 239 189 0 89 chrY 13599239 13599329 -11113750 - L1MC4 LINE L1 -1341 6701 6620 180 111 0 0 chrY 13599914 13599941 -11113138 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 23 33 0 0 chrY 13600318 13600348 -11112731 + AT_rich Low_complexity Low_complexity 1 30 0 1601 185 7 20 chrY 13600390 13600692 -11112387 + AluJb SINE Alu 14 311 -1 198 244 122 85 chrY 13600711 13600793 -11112286 + L2 LINE L2 3192 3276 -37 1519 206 21 43 chrY 13600808 13601182 -11111897 - MER47A DNA MER2_type 0 366 1 1865 125 56 13 chrY 13601859 13602162 -11110917 - THE1B LTR MaLR 0 364 49 186 331 24 73 chrY 13603109 13603233 -11109846 + L2 LINE L2 2965 3082 -190 2010 228 19 24 chrY 13603450 13603914 -11109165 + MLT1C LTR MaLR 6 467 0 1307 222 11 14 chrY 13604651 13604926 -11108153 - AluJo SINE Alu -38 274 1 1246 205 62 0 chrY 13605427 13605685 -11107394 - L1MB5 LINE L1 -8 6166 5893 393 244 87 31 chrY 13606991 13607236 -11105843 - MLT1I LTR MaLR 0 423 193 811 222 167 31 chrY 13607875 13608357 -11104722 + LTR28 LTR ERV1 1 598 -422 448 259 20 48 chrY 13608390 13608537 -11104542 + LTR27 LTR ERV1 494 636 0 23 54 0 0 chrY 13608593 13608630 -11104449 + AT_rich Low_complexity Low_complexity 1 37 0 859 205 0 0 chrY 13608798 13608949 -11104130 - FRAM SINE Alu -30 146 1 668 209 0 8 chrY 13609029 13609158 -11103921 - FLAM_A SINE Alu -5 128 1 419 218 0 0 chrY 13609172 13609250 -11103829 - FLAM_A SINE Alu -17 125 48 24 0 0 0 chrY 13609726 13609750 -11103329 + AT_rich Low_complexity Low_complexity 1 24 0 230 353 79 54 chrY 13610768 13611046 -11102033 + L3 LINE CR1 338 622 -955 309 51 0 0 chrY 13611111 13611150 -11101929 + (CA)n Simple_repeat Simple_repeat 2 40 0 2237 174 14 19 chrY 13611154 13611586 -11101493 - Tigger2a DNA MER2_type -3 431 2 204 179 0 0 chrY 13611596 13611635 -11101444 + GA-rich Low_complexity Low_complexity 4 42 0 * 587 150 40 12 chrY 13611632 13611805 -11101274 + (TAGA)n Simple_repeat Simple_repeat 2 179 0 729 180 49 0 chrY 13612440 13612562 -11100517 - AluJo SINE Alu -174 128 1 3299 155 4 0 chrY 13612933 13613424 -11099655 - MER1A DNA MER1_type 0 529 37 1105 168 78 0 chrY 13613691 13613919 -11099160 - MER39B LTR ERV1 0 647 413 7426 29 3 1 chrY 13614801 13615790 -11097289 + L1PA3 LINE L1 5164 6154 -1 314 291 91 6 chrY 13615848 13616013 -11097066 + MIR SINE MIR 80 258 -4 961 211 105 78 chrY 13616173 13616467 -11096612 + AluJo SINE Alu 1 302 0 669 185 16 36 chrY 13616480 13616733 -11096346 + GA-rich Low_complexity Low_complexity 1 248 0 234 260 0 0 chrY 13616733 13616783 -11096296 - Tigger7 DNA MER2_type -379 2108 2059 940 220 9 27 chrY 13616847 13617070 -11096009 - MLT1E2 LTR MaLR -407 219 1 1079 181 68 17 chrY 13617351 13617588 -11095491 - MLT1B LTR MaLR -4 386 138 274 0 0 0 chrY 13617588 13617618 -11095461 + THE1B LTR MaLR 1 30 -334 415 176 14 0 chrY 13617618 13617692 -11095387 - AluJb SINE Alu -39 273 199 187 250 94 16 chrY 13617731 13617795 -11095284 + MIR SINE MIR 37 105 -157 226 303 18 28 chrY 13619865 13619974 -11093105 - MIR3 SINE MIR -3 205 98 437 288 0 0 chrY 13620021 13620171 -11092908 + FRAM SINE Alu 31 180 0 1349 204 0 4 chrY 13620407 13620657 -11092422 + AluJb SINE Alu 25 273 -39 840 166 10 21 chrY 13620832 13621249 -11091830 + CT-rich Low_complexity Low_complexity 1 412 0 40671 65 12 2 chrY 13621536 13627628 -11085451 + L1PA4 LINE L1 1 6152 -3 1933 156 3 0 chrY 13628968 13629270 -11083809 + AluSc SINE Alu 5 307 -2 1648 189 7 7 chrY 13629330 13629639 -11083440 + AluSx SINE Alu 1 309 0 25 31 0 0 chrY 13630516 13630548 -11082531 + AT_rich Low_complexity Low_complexity 1 32 0 9937 64 6 1 chrY 13631161 13632464 -11080615 - L1P LINE L1 -1482 4664 3355 7397 41 1 0 chrY 13632465 13634006 -11079073 + L1PA3 LINE L1 4614 6155 0 862 259 169 9 chrY 13634021 13634097 -11078982 - LTR52 LTR ERVL -1 420 358 258 105 0 0 chrY 13634097 13634135 -11078944 + (CA)n Simple_repeat Simple_repeat 2 39 0 862 259 169 9 chrY 13634135 13634406 -11078673 - LTR52 LTR ERVL -63 358 17 1128 205 0 68 chrY 13634409 13634672 -11078407 + AluJo SINE Alu 1 245 -67 1102 75 19 0 chrY 13634696 13634857 -11078222 + (GAAA)n Simple_repeat Simple_repeat 2 165 0 683 191 17 6 chrY 13634884 13635062 -11078017 + GA-rich Low_complexity Low_complexity 1 180 0 755 171 6 22 chrY 13635082 13635263 -11077816 + GA-rich Low_complexity Low_complexity 1 178 0 307 143 0 18 chrY 13635263 13635319 -11077760 + (GAAA)n Simple_repeat Simple_repeat 1 55 0 666 183 20 7 chrY 13635319 13635878 -11077201 + GA-rich Low_complexity Low_complexity 1 566 0 251 222 0 14 chrY 13635863 13635935 -11077144 + A-rich Low_complexity Low_complexity 4 74 0 * 688 157 21 12 chrY 13635941 13636361 -11076718 + GA-rich Low_complexity Low_complexity 1 424 0 892 74 5 58 chrY 13636378 13636567 -11076512 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 351 138 12 25 chrY 13636581 13636661 -11076418 + GA-rich Low_complexity Low_complexity 3 81 0 26 0 0 0 chrY 13637165 13637191 -11075888 + AT_rich Low_complexity Low_complexity 1 26 0 2245 80 3 22 chrY 13637452 13637793 -11075286 - AluY SINE Alu 0 311 1 517 178 9 19 chrY 13641279 13641386 -11071693 - MER20 DNA MER1_type -21 198 93 319 234 0 0 chrY 13641417 13641481 -11071598 + AluS SINE Alu 1 64 -244 1681 193 21 48 chrY 13641490 13641910 -11071169 + LTR3 LTR ERVK 8 416 -16 4735 144 34 14 chrY 13641938 13642798 -11070281 + HERVK3 LTR ERVK 31 907 -6336 2341 187 0 0 chrY 13642788 13643199 -11069880 + HERVK3 LTR ERVK 282 692 -6145 * 789 182 47 0 chrY 13643498 13643646 -11069433 + HERVK3 LTR ERVK 2332 2486 -4351 524 143 0 0 chrY 13644064 13644148 -11068931 + HERVK3 LTR ERVK 3474 3557 -3280 3085 124 42 0 chrY 13644163 13644640 -11068439 - LTR6A LTR ERV1 0 564 68 809 181 0 0 chrY 13644677 13644839 -11068240 + HERVK3 LTR ERVK 2027 3807 -3030 2690 144 13 4 chrY 13644841 13645293 -11067786 + HERVK3 LTR ERVK 2458 2913 -4330 1188 86 0 101 chrY 13645277 13645446 -11067633 + HERVK3 LTR ERVK 4119 4265 -2978 * 2192 130 0 0 chrY 13645446 13645753 -11067326 + AluSc SINE Alu 2 308 -1 1188 86 0 101 chrY 13645753 13645792 -11067287 + HERVK3 LTR ERVK 4265 4306 -2937 3643 165 6 3 chrY 13645793 13646460 -11066619 + HERVK3 LTR ERVK 4686 5354 -1889 653 96 0 0 chrY 13646480 13646574 -11066505 + HERVK3 LTR ERVK 7150 7243 0 1865 173 23 51 chrY 13646578 13647011 -11066068 + LTR3 LTR ERVK 5 425 -7 1447 174 8 0 chrY 13647023 13647038 -11066041 + AluSx SINE Alu 60 73 -239 1542 126 0 9 chrY 13647038 13647252 -11065827 - AluY SINE Alu -14 297 86 1447 174 8 0 chrY 13647252 13647483 -11065596 + AluSx SINE Alu 73 308 -4 517 350 16 0 chrY 13647612 13647798 -11065281 + MER5A DNA MER1_type 1 189 0 1414 222 11 3 chrY 13647883 13648167 -11064912 + AluJo SINE Alu 2 287 -15 234 150 0 0 chrY 13648170 13648210 -11064869 + (GA)n Simple_repeat Simple_repeat 1 40 0 825 270 45 8 chrY 13648633 13649043 -11064036 - MLT1D LTR MaLR 0 505 23 348 361 38 6 chrY 13649435 13649593 -11063486 + MIR SINE MIR 88 250 -12 25 31 0 0 chrY 13650709 13650741 -11062338 + AT_rich Low_complexity Low_complexity 1 32 0 757 197 238 83 chrY 13650805 13651226 -11061853 - LTR21A LTR ERV1 -19 486 1 433 216 34 68 chrY 13651242 13651390 -11061689 + HERV9 LTR ERV1 7115 7257 -1142 331 247 0 0 chrY 13651392 13651481 -11061598 - HERVFH21 LTR ERV1 -28 6501 6413 4933 261 17 14 chrY 13651502 13652969 -11060110 - HERVFH21 LTR ERV1 -367 8032 6562 7097 128 22 1 chrY 13653477 13655624 -11057455 - HERVFH21 LTR ERV1 -1196 5333 3074 * 7126 145 16 13 chrY 13655621 13656845 -11056234 - HERVFH21 LTR ERV1 -4238 2291 1065 679 87 0 0 chrY 13656846 13656938 -11056141 - LTR30 LTR ERV1 -630 92 1 574 159 44 9 chrY 13656938 13657049 -11056030 - MER84 LTR ERVI -279 228 114 713 189 0 0 chrY 13657068 13657195 -11055884 - GSAT Satellite centromeric -89 128 2 4802 124 66 39 chrY 13657195 13657999 -11055080 - LTR12 LTR ERV1 0 826 1 6474 107 10 34 chrY 13658003 13659049 -11054030 - HERV9 LTR ERV1 -4 8395 7375 2015 115 3 32 chrY 13659049 13659389 -11053690 - HERV9 LTR ERV1 -1943 6456 6127 * 25055 114 35 5 chrY 13659386 13663304 -11049775 - HERV9 LTR ERV1 -4361 4038 1 5049 116 48 40 chrY 13663304 13664124 -11048955 - LTR12 LTR ERV1 0 826 1 248 246 0 0 chrY 13664133 13664190 -11048889 - MER84 LTR ERVI -450 57 1 678 273 35 23 chrY 13664581 13664986 -11048093 - L1 LINE L1 -2991 3155 2747 1447 217 39 14 chrY 13664986 13665350 -11047729 + THE1C LTR MaLR 1 373 -2 678 273 35 23 chrY 13665350 13665385 -11047694 - L1 LINE L1 -3399 2747 2714 737 284 70 60 chrY 13665415 13666479 -11046600 + L1MEc LINE L1 718 1791 -4605 256 198 10 10 chrY 13666512 13666613 -11046466 + (TA)n Simple_repeat Simple_repeat 1 101 0 22 56 0 0 chrY 13667832 13667868 -11045211 + AT_rich Low_complexity Low_complexity 1 36 0 252 0 0 0 chrY 13667877 13667905 -11045174 + (TC)n Simple_repeat Simple_repeat 1 28 0 1215 118 0 15 chrY 13670542 13670737 -11042342 - AluY SINE Alu -1 310 119 346 185 0 0 chrY 13670854 13670919 -11042160 - FLAM SINE Alu -13 120 56 589 214 14 21 chrY 13670924 13671064 -11042015 - FRAM SINE Alu -3 173 35 185 94 31 0 chrY 13671787 13671819 -11041260 + T-rich Low_complexity Low_complexity 3 35 0 1411 225 32 0 chrY 13671927 13672094 -11040985 - AluJo SINE Alu -18 294 113 225 0 0 0 chrY 13672094 13672119 -11040960 + (TTTTG)n Simple_repeat Simple_repeat 5 29 0 1411 225 32 0 chrY 13672119 13672236 -11040843 - AluJo SINE Alu -199 113 1 1926 237 91 25 chrY 13672973 13673653 -11039426 - MER50 LTR ERV1 0 734 10 569 272 30 116 chrY 13674069 13674497 -11038582 + L1MEc LINE L1 2752 3215 -3000 1191 234 16 68 chrY 13674497 13674805 -11038274 + AluJb SINE Alu 1 292 -10 569 272 30 116 chrY 13674805 13674818 -11038261 + L1MEc LINE L1 3215 3228 -2987 240 59 0 0 chrY 13674818 13674852 -11038227 + (CA)n Simple_repeat Simple_repeat 1 34 0 569 272 30 116 chrY 13674852 13675004 -11038075 + L1MEc LINE L1 3228 3295 -2920 2047 52 0 0 chrY 13675308 13675557 -11037522 + L1PA3 LINE L1 5904 6152 -3 364 342 72 16 chrY 13675557 13675876 -11037203 + L1MEc LINE L1 3725 4061 -2154 1319 213 53 18 chrY 13675952 13676234 -11036845 - AluJo SINE Alu -20 292 1 340 215 58 84 chrY 13676372 13676563 -11036516 + L1ME LINE L1 5525 5709 -461 445 114 0 14 chrY 13676874 13676944 -11036135 + MLT1A2 LTR MaLR 2 70 -304 472 184 11 0 chrY 13676998 13677085 -11035994 + AluS SINE Alu 1 88 -225 3215 126 7 0 chrY 13677088 13677628 -11035451 + L1P LINE L1 1962 2505 -3641 348 232 0 0 chrY 13677628 13677710 -11035369 + Tigger5 DNA MER2_type 2241 2322 -1 369 0 0 0 chrY 13677720 13677761 -11035318 + (TG)n Simple_repeat Simple_repeat 1 41 0 628 169 0 25 chrY 13677895 13678013 -11035066 - FRAM SINE Alu -2 174 60 252 59 0 0 chrY 13678031 13678065 -11035014 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 783 186 0 0 chrY 13678068 13678186 -11034893 - FLAM_C SINE Alu -15 118 1 998 162 49 5 chrY 13678771 13678956 -11034123 + THE1C LTR MaLR 1 193 -182 1641 208 41 0 chrY 13679248 13679642 -11033437 - L1MA8 LINE L1 0 6291 5882 1585 209 93 8 chrY 13680637 13681035 -11032044 - MSTB1 LTR MaLR 0 432 1 1375 182 14 7 chrY 13682132 13682412 -11030667 - L1MC1 LINE L1 -2 6331 6050 590 174 10 0 chrY 13683128 13683226 -11029853 + FLAM_C SINE Alu 13 111 -32 282 73 0 0 chrY 13683235 13683276 -11029803 + (CA)n Simple_repeat Simple_repeat 1 41 0 1220 158 133 14 chrY 13684346 13684625 -11028454 - L1PA16 LINE L1 0 6166 5855 346 161 65 0 chrY 13684625 13684687 -11028392 + AluJ/FLAM SINE Alu 8 73 -229 210 71 0 0 chrY 13684879 13684907 -11028172 + (T)n Simple_repeat Simple_repeat 1 28 0 188 33 0 33 chrY 13684952 13684982 -11028097 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 7767 15 1 3 chrY 13684982 13686096 -11026983 - L1HS LINE L1 -10 6145 5033 * 11196 19 0 0 chrY 13686095 13687395 -11025684 + L1HS LINE L1 3761 5060 -1086 3185 113 19 2 chrY 13688659 13689137 -11023942 - LTR15 LTR ERV1 -7 486 1 284 44 0 67 chrY 13689186 13689231 -11023848 + MADE1 DNA Mariner 5 46 -34 706 179 90 6 chrY 13689690 13689846 -11023233 + L1PA15 LINE L1 5952 6120 -45 22 70 0 0 chrY 13690209 13690252 -11022827 + AT_rich Low_complexity Low_complexity 1 43 0 327 60 0 0 chrY 13690292 13690342 -11022737 + Alu SINE Alu 252 301 0 1695 147 0 12 chrY 13690676 13690935 -11022144 + AluSq SINE Alu 1 256 -57 240 35 0 0 chrY 13690943 13690972 -11022107 + (TAAA)n Simple_repeat Simple_repeat 3 31 0 469 273 6 17 chrY 13691625 13691658 -11021421 + (TA)n Simple_repeat Simple_repeat 1 33 -1434 1941 184 58 19 chrY 13691658 13692070 -11021009 - MSTA LTR MaLR 0 428 1 469 273 6 17 chrY 13692070 13692115 -11020964 + (TA)n Simple_repeat Simple_repeat 33 77 -1390 1520 203 0 78 chrY 13692115 13692489 -11020590 + MER7A DNA MER2_type 4 346 0 469 273 6 17 chrY 13692489 13693108 -11019971 + (TA)n Simple_repeat Simple_repeat 77 1467 0 369 291 0 11 chrY 13693177 13693359 -11019720 + (TA)n Simple_repeat Simple_repeat 1 180 0 318 96 19 0 chrY 13693534 13693586 -11019493 + MADE1 DNA Mariner 28 80 0 222 37 0 0 chrY 13693850 13693877 -11019202 + (CA)n Simple_repeat Simple_repeat 2 28 0 1788 149 35 3 chrY 13694231 13694513 -11018566 - AluSx SINE Alu -21 291 1 245 222 56 33 chrY 13694942 13695032 -11018047 + MLT1I LTR MaLR 318 409 0 2224 169 0 8 chrY 13695069 13695436 -11017643 + THE1B LTR MaLR 1 364 0 1436 213 60 25 chrY 13695710 13696041 -11017038 + MLT1A1 LTR MaLR 1 346 -19 1557 192 82 96 chrY 13696041 13696603 -11016476 - MLT2B3 LTR ERVL 0 554 1 1436 213 60 25 chrY 13696603 13696624 -11016455 + MLT1A1 LTR MaLR 346 365 0 665 187 67 0 chrY 13696672 13696822 -11016257 - L1M2 LINE L1 -599 5692 5533 415 198 82 50 chrY 13696823 13697005 -11016074 + L1MA7 LINE L1 6104 6291 0 21 36 0 0 chrY 13697190 13697218 -11015861 + AT_rich Low_complexity Low_complexity 1 28 0 908 120 11 11 chrY 13698159 13698334 -11014745 + (TAGA)n Simple_repeat Simple_repeat 2 176 0 1757 171 4 4 chrY 13698345 13698696 -11014383 + AluSx SINE Alu 1 351 0 535 193 33 8 chrY 13698730 13699260 -11013819 + (TAGA)n Simple_repeat Simple_repeat 1 543 0 270 180 23 23 chrY 13699276 13699404 -11013675 + (TAGA)n Simple_repeat Simple_repeat 3 130 0 1288 250 59 42 chrY 13699480 13699524 -11013555 - L1ME1 LINE L1 -5 6161 6119 2100 123 0 13 chrY 13699524 13699834 -11013245 - AluSx SINE Alu -6 306 1 1288 250 59 42 chrY 13699834 13700317 -11012762 - L1ME1 LINE L1 -47 6119 5625 1248 206 8 24 chrY 13701032 13701308 -11011771 - AluJb SINE Alu 0 306 35 2447 71 0 3 chrY 13702030 13702340 -11010739 - AluY SINE Alu -2 309 1 192 40 0 0 chrY 13702945 13702970 -11010109 + (TC)n Simple_repeat Simple_repeat 2 26 0 201 229 16 16 chrY 13702970 13703031 -11010048 + (TA)n Simple_repeat Simple_repeat 2 62 0 511 136 34 17 chrY 13703110 13703287 -11009792 + (TA)n Simple_repeat Simple_repeat 1 180 0 466 162 0 27 chrY 13703419 13703604 -11009475 + (TA)n Simple_repeat Simple_repeat 1 180 0 993 208 5 10 chrY 13703648 13703845 -11009234 - AluSx SINE Alu -54 258 63 210 37 0 0 chrY 13703952 13703979 -11009100 + (TG)n Simple_repeat Simple_repeat 2 28 0 1907 226 3 3 chrY 13704160 13704531 -11008548 + MER47B DNA MER2_type 32 402 -16 537 250 0 0 chrY 13704561 13704665 -11008414 - Tigger3(Golem) DNA MER2_type -2 3027 2924 265 211 0 22 chrY 13704828 13704918 -11008161 + (TA)n Simple_repeat Simple_repeat 1 88 0 852 215 6 0 chrY 13704964 13705127 -11007952 - FRAM SINE Alu -2 174 11 1514 167 20 40 chrY 13705148 13705448 -11007631 - AluSq SINE Alu -17 296 3 228 359 93 35 chrY 13706012 13706217 -11006862 + L2 LINE L2 572 764 -2550 1983 149 3 3 chrY 13706217 13706518 -11006561 - AluSx SINE Alu -11 301 1 228 359 93 35 chrY 13706518 13706708 -11006371 + L2 LINE L2 764 990 -2324 1478 210 30 24 chrY 13707557 13707890 -11005189 + MLT1A2 LTR MaLR 1 335 -39 1015 179 0 0 chrY 13707890 13708076 -11005003 - AluSc SINE Alu 0 313 128 1140 51 0 32 chrY 13708102 13708259 -11004820 - L1PA7 LINE L1 0 6154 6003 180 0 0 0 chrY 13708304 13708324 -11004755 + (T)n Simple_repeat Simple_repeat 1 20 0 644 185 118 0 chrY 13708324 13708443 -11004636 - AluSq/x SINE Alu -180 133 1 238 245 0 0 chrY 13708443 13708496 -11004583 + MLT1A2 LTR MaLR 322 374 0 545 200 40 3 chrY 13710061 13710157 -11002922 + (TA)n Simple_repeat Simple_repeat 1 92 -382 564 159 0 32 chrY 13710157 13710283 -11002796 - L1MB4 LINE L1 -12 6168 6047 545 200 40 3 chrY 13710283 13710519 -11002560 + (TA)n Simple_repeat Simple_repeat 92 474 0 456 205 47 0 chrY 13710531 13710702 -11002377 + (TA)n Simple_repeat Simple_repeat 2 180 0 43 35 0 0 chrY 13710729 13710786 -11002293 + AT_rich Low_complexity Low_complexity 1 57 0 225 94 0 0 chrY 13711169 13711201 -11001878 + (T)n Simple_repeat Simple_repeat 1 32 0 362 255 0 65 chrY 13711302 13711444 -11001635 - L1M3 LINE L1 -517 5651 5522 471 217 17 0 chrY 13711448 13711563 -11001516 + L1MB5 LINE L1 5845 5961 -213 180 0 0 0 chrY 13711616 13711636 -11001443 + (T)n Simple_repeat Simple_repeat 1 20 0 7350 144 7 3 chrY 13711966 13713682 -10999397 + HERVL66 LTR ERVL 5 1797 -2532 2889 207 19 2 chrY 13713664 13714204 -10998875 + HERVL66 LTR ERVL 2652 3200 -1129 * 2902 131 9 0 chrY 13714202 13714630 -10998449 + HERVL66 LTR ERVL 3898 4329 0 1936 119 3 29 chrY 13714630 13714809 -10998270 + LTR66 LTR ERVL 1 170 -440 7836 80 4 1 chrY 13714809 13715812 -10997267 + LTR13 LTR ERVK 1 1006 -1 1936 119 3 29 chrY 13715812 13715942 -10997137 + LTR66 LTR ERVL 170 302 -308 1577 188 0 27 chrY 13715944 13716264 -10996815 - AluSx SINE Alu 0 312 1 959 205 19 42 chrY 13716433 13716648 -10996431 + L1MB5 LINE L1 5957 6166 -8 428 228 41 6 chrY 13716682 13716853 -10996226 + (TA)n Simple_repeat Simple_repeat 2 178 0 965 244 92 45 chrY 13717000 13717423 -10995656 - MLT1D LTR MaLR -62 443 1 504 219 0 0 chrY 13717423 13717519 -10995560 + MER90 LTR ERV1 478 573 -2 1897 165 3 7 chrY 13718598 13718907 -10994172 + AluSx SINE Alu 1 308 -4 991 259 103 3 chrY 13719094 13719376 -10993703 - MER7A DNA MER2_type 0 346 39 1813 137 0 4 chrY 13719956 13720256 -10992823 - AluY SINE Alu 0 322 24 3903 98 0 28 chrY 13720383 13720953 -10992126 + MER41A LTR ERV1 1 554 0 30 45 0 0 chrY 13720992 13721036 -10992043 + AT_rich Low_complexity Low_complexity 1 44 0 1813 205 22 37 chrY 13721040 13721380 -10991699 - L1MA7 LINE L1 -1 6290 5957 2500 224 79 13 chrY 13721380 13722062 -10991017 + LTR8A LTR ERV1 1 727 0 1813 205 22 37 chrY 13722062 13722180 -10990899 - L1MA7 LINE L1 -334 5957 5839 4540 100 45 0 chrY 13722307 13722968 -10990111 + LTR8 LTR ERV1 1 691 0 31833 112 31 19 chrY 13722968 13726289 -10986790 + HUERS-P1 LTR ERV1 1 3283 -2980 1858 168 7 0 chrY 13726289 13726580 -10986499 + AluSp SINE Alu 9 301 -12 31833 112 31 19 chrY 13726580 13727149 -10985930 + HUERS-P1 LTR ERV1 3283 3844 -2419 2313 93 0 0 chrY 13727149 13727450 -10985629 - AluY SINE Alu -10 301 1 31833 112 31 19 chrY 13727450 13728350 -10984729 + HUERS-P1 LTR ERV1 3844 4853 -1410 1969 141 14 3 chrY 13728350 13728640 -10984439 - AluSx SINE Alu -19 293 1 31833 112 31 19 chrY 13728640 13728832 -10984247 + HUERS-P1 LTR ERV1 4853 5041 -1222 2864 107 41 3 chrY 13728832 13729311 -10983768 - LTR30 LTR ERV1 0 722 195 3806 138 25 2 chrY 13729315 13729886 -10983193 - HERV30 LTR ERV1 -330 7927 7344 594 83 12 0 chrY 13729879 13729963 -10983116 - HERV30 LTR ERV1 -4795 3462 3378 * 473 92 0 0 chrY 13729964 13730029 -10983050 + HERV30 LTR ERV1 3274 3338 -4919 24539 108 8 5 chrY 13730043 13730711 -10982368 - HERV30 LTR ERV1 -4880 3377 2713 195 42 0 0 chrY 13730711 13730735 -10982344 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 24539 108 8 5 chrY 13730735 13730748 -10982331 - HERV30 LTR ERV1 -5544 2713 2702 2175 119 0 22 chrY 13730748 13731066 -10982013 - AluY SINE Alu 0 311 1 24539 108 8 5 chrY 13731066 13733750 -10979329 - HERV30 LTR ERV1 -5555 2702 1 2981 96 30 1 chrY 13733750 13734409 -10978670 - LTR30 LTR ERV1 0 722 1 7656 129 10 16 chrY 13734409 13735643 -10977436 + HERV30 LTR ERV1 5038 6263 0 2008 153 0 3 chrY 13735659 13735967 -10977112 + AluSc SINE Alu 1 307 -2 4564 125 15 3 chrY 13735978 13736660 -10976419 + LTR8 LTR ERV1 2 691 0 339 320 41 52 chrY 13737284 13737456 -10975623 - MER5B DNA MER1_type -3 175 6 17556 47 11 2 chrY 13737616 13740615 -10972464 - L1PA4 LINE L1 -3 6152 3132 1234 209 9 77 chrY 13741916 13742241 -10970838 + MLT2A2 LTR ERVL 2 304 -149 21 36 0 0 chrY 13742241 13742269 -10970810 + AT_rich Low_complexity Low_complexity 1 28 0 1755 204 0 0 chrY 13742278 13742572 -10970507 - AluSx SINE Alu -18 294 1 922 256 26 44 chrY 13742573 13742843 -10970236 + MLT2B3 LTR ERVL 290 554 0 263 273 55 55 chrY 13742963 13743128 -10969951 + L1MCc LINE L1 289 453 -5970 879 280 56 33 chrY 13743163 13743618 -10969461 + LTR40c LTR ERVL 6 517 -2 35 54 0 0 chrY 13743734 13743790 -10969289 + AT_rich Low_complexity Low_complexity 1 56 0 310 224 0 0 chrY 13743799 13743857 -10969222 + Tigger2 DNA MER2_type 1 58 -2660 455 207 26 86 chrY 13743857 13743904 -10969175 + Tigger2 DNA MER2_type 2610 2658 -60 1276 217 21 31 chrY 13743904 13744194 -10968885 - AluSx SINE Alu -25 287 1 455 207 26 86 chrY 13744194 13744262 -10968817 + Tigger2 DNA MER2_type 2658 2718 0 383 157 78 18 chrY 13744270 13744436 -10968643 + (TA)n Simple_repeat Simple_repeat 1 176 0 21 36 0 0 chrY 13744436 13744464 -10968615 + AT_rich Low_complexity Low_complexity 1 28 0 566 107 53 6 chrY 13744545 13744714 -10968365 + (TCTA)n Simple_repeat Simple_repeat 4 180 0 1225 284 19 23 chrY 13744718 13745148 -10967931 + L1MD3 LINE L1 7509 7936 -59 2825 7 0 3 chrY 13745209 13745519 -10967560 + AluYa5 SINE Alu 1 309 -2 802 189 43 134 chrY 13745537 13745571 -10967508 + L1MD1 LINE L1 5297 5333 -833 2106 111 0 7 chrY 13745571 13745869 -10967210 + AluY SINE Alu 1 296 -15 802 189 43 134 chrY 13745869 13746184 -10966895 + L1MD1 LINE L1 5333 5614 -552 2379 171 75 7 chrY 13746184 13746918 -10966161 - LTR1B LTR ERV1 0 826 1 858 250 43 54 chrY 13746934 13747348 -10965731 + L1MD1 LINE L1 5617 6018 -148 761 123 8 8 chrY 13747968 13748098 -10964981 - L1MA3 LINE L1 -3 6302 6173 1297 146 71 0 chrY 13748101 13748340 -10964739 + L1MA3 LINE L1 5828 6083 -222 16264 96 7 2 chrY 13749628 13752747 -10960332 - L1PA6 LINE L1 -18 6136 3006 517 108 65 0 chrY 13752758 13752851 -10960228 - L1PA6 LINE L1 -3743 2403 2305 15930 160 40 17 chrY 13752855 13755783 -10957296 - L1P LINE L1 -3142 3004 11 2296 147 10 3 chrY 13756319 13756706 -10956373 - L1PA12 LINE L1 -10 6158 5769 5876 61 0 0 chrY 13756716 13757465 -10955614 - L1PA4 LINE L1 -3 6152 5404 24202 49 94 0 chrY 13757465 13760740 -10952339 + L1PA4 LINE L1 1823 5403 -743 331 125 0 0 chrY 13760734 13760782 -10952297 - L1PA12 LINE L1 -384 5784 5737 * 2346 148 27 2 chrY 13761146 13761573 -10951506 + L1PB1 LINE L1 5736 6172 0 189 0 0 0 chrY 13762453 13762474 -10950605 + (GAAA)n Simple_repeat Simple_repeat 2 22 0 1073 133 8 80 chrY 13762474 13762560 -10950519 + L1MA2 LINE L1 6074 6165 -139 1750 193 0 0 chrY 13762560 13762856 -10950223 + AluSx SINE Alu 4 299 -13 1073 133 8 80 chrY 13762856 13763018 -10950061 + L1MA2 LINE L1 6165 6304 0 21 36 0 0 chrY 13763343 13763371 -10949708 + AT_rich Low_complexity Low_complexity 1 28 0 1843 146 4 4 chrY 13765011 13765291 -10947788 + AluSc SINE Alu 2 281 -28 545 14 29 0 chrY 13765291 13765360 -10947719 + (CTAAA)n Simple_repeat Simple_repeat 3 73 0 722 151 68 155 chrY 13765456 13765721 -10947358 - L1MA8 LINE L1 -57 6234 5993 13806 136 17 9 chrY 13765721 13768804 -10944275 + L1PA7 LINE L1 2952 6061 -93 652 38 0 0 chrY 13768802 13768882 -10944197 - L1P LINE L1 -732 5422 5343 * 4565 168 11 1 chrY 13768881 13769686 -10943393 + L1PA14 LINE L1 5336 6148 -13 21 0 0 0 chrY 13772110 13772131 -10940948 + AT_rich Low_complexity Low_complexity 1 21 0 1963 273 96 4 chrY 13772516 13773422 -10939657 - L1M4 LINE L1 -753 5393 4405 583 303 28 0 chrY 13773431 13773609 -10939470 - AluJo SINE Alu -11 301 119 614 79 11 0 chrY 13773900 13773989 -10939090 + (TC)n Simple_repeat Simple_repeat 1 90 0 533 283 94 23 chrY 13773989 13774254 -10938825 - AluJb SINE Alu -10 302 19 22 70 0 0 chrY 13774738 13774781 -10938298 + AT_rich Low_complexity Low_complexity 1 43 0 388 275 15 18 chrY 13775315 13775382 -10937697 - L1M4 LINE L1 -1760 4386 4320 1723 173 17 0 chrY 13775382 13775677 -10937402 + AluSp SINE Alu 1 300 -13 388 275 15 18 chrY 13775677 13775802 -10937277 - L1M4 LINE L1 -1826 4320 4182 340 201 5 38 chrY 13776538 13776722 -10936357 + (TTAGGG)n Simple_repeat Simple_repeat 3 180 0 213 77 0 58 chrY 13776808 13776860 -10936219 + (TTAGGG)n Simple_repeat Simple_repeat 4 52 0 356 216 7 44 chrY 13776953 13777254 -10935825 + (TTAGGG)n Simple_repeat Simple_repeat 1 289 0 257 218 0 29 chrY 13777408 13777578 -10935501 + (TTAGGG)n Simple_repeat Simple_repeat 5 169 0 293 159 0 14 chrY 13777675 13777744 -10935335 + (TTAGGG)n Simple_repeat Simple_repeat 5 72 0 201 259 20 48 chrY 13777773 13777920 -10935159 + (TTAGGG)n Simple_repeat Simple_repeat 2 144 0 265 194 0 44 chrY 13777938 13778118 -10934961 + (TTAGGG)n Simple_repeat Simple_repeat 4 175 0 331 239 6 43 chrY 13778137 13778300 -10934779 + (TTAGGG)n Simple_repeat Simple_repeat 2 158 0 236 176 15 44 chrY 13778357 13778425 -10934654 + (TTAGGG)n Simple_repeat Simple_repeat 4 69 0 208 154 0 55 chrY 13778452 13778543 -10934536 + (TTAGGG)n Simple_repeat Simple_repeat 5 90 0 233 269 5 11 chrY 13778619 13778805 -10934274 + (TTAGGG)n Simple_repeat Simple_repeat 1 185 0 325 218 5 25 chrY 13778833 13779045 -10934034 + (TTAGGG)n Simple_repeat Simple_repeat 1 207 0 321 197 0 90 chrY 13779063 13779241 -10933838 + (TTAGGG)n Simple_repeat Simple_repeat 5 166 0 434 257 0 18 chrY 13779270 13779501 -10933578 + (TTAGGG)n Simple_repeat Simple_repeat 1 226 0 2448 234 68 20 chrY 13780577 13781292 -10931787 + L1MB5 LINE L1 5415 6164 -10 1025 188 37 9 chrY 13781439 13781657 -10931422 - MER50 LTR ERV1 0 734 511 491 286 23 0 chrY 13781665 13781840 -10931239 - L1M4 LINE L1 -901 5245 5067 434 216 99 9 chrY 13781850 13781961 -10931118 + L1MB3 LINE L1 5429 5549 -625 485 180 54 9 chrY 13781965 13782076 -10931003 + L1MB3 LINE L1 6068 6183 0 1394 257 64 47 chrY 13782272 13782894 -10930185 - L1MC3 LINE L1 -1767 6018 5386 1308 224 7 7 chrY 13783688 13784003 -10929076 - AluSx SINE Alu 0 315 1 316 180 65 2 chrY 13784355 13784446 -10928633 - L1MC3 LINE L1 -956 5388 5294 820 230 5 0 chrY 13784556 13784747 -10928332 - AluSg/x SINE Alu 0 310 119 2254 177 5 21 chrY 13784773 13785209 -10927870 - LTR3 LTR ERVK 0 429 1 4857 272 13 2 chrY 13785212 13786438 -10926641 - HERVK3 LTR ERVK -2 7241 6003 1526 207 14 0 chrY 13786441 13786726 -10926353 - HERVK3 LTR ERVK -4046 3197 2909 2276 290 20 40 chrY 13786822 13787694 -10925385 - LTR15-int LTR ERV1 -4580 2416 1531 * 16087 110 10 5 chrY 13787691 13789943 -10923136 - LTR15-int LTR ERV1 -85 8650 6388 * 34451 135 10 11 chrY 13789933 13789982 -10923097 - LTR15-int LTR ERV1 -3512 5223 5175 180 0 0 0 chrY 13789982 13790002 -10923077 + (TA)n Simple_repeat Simple_repeat 2 21 0 34451 135 10 11 chrY 13790002 13795178 -10917901 - LTR15-int LTR ERV1 -3560 5175 1 3349 95 42 8 chrY 13795178 13795227 -10917852 - LTR15 LTR ERV1 0 493 447 410 0 0 20 chrY 13795227 13795278 -10917801 + (TTA)n Simple_repeat Simple_repeat 2 51 0 3349 95 42 8 chrY 13795278 13795701 -10917378 - LTR15 LTR ERV1 -46 447 5 4875 217 47 29 chrY 13795706 13796966 -10916113 + L1PB1 LINE L1 3202 4484 -1662 987 168 23 0 chrY 13796974 13797147 -10915932 + AluSp SINE Alu 135 311 -2 3127 188 40 24 chrY 13797164 13798443 -10914636 + L1PB1 LINE L1 4477 5790 -361 363 204 30 15 chrY 13798444 13798576 -10914503 + (TATATG)n Simple_repeat Simple_repeat 1 134 0 306 231 33 44 chrY 13798578 13798669 -10914410 + L1MC4 LINE L1 6614 6703 -1339 2187 185 0 0 chrY 13798680 13799042 -10914037 + L1PB1 LINE L1 5782 6143 -8 6321 127 22 34 chrY 13799077 13800213 -10912866 + L1MA1 LINE L1 5181 6302 0 242 239 114 11 chrY 13800311 13800399 -10912680 + MER53 DNA DNA 81 177 -12 21 0 0 0 chrY 13800838 13800859 -10912220 + AT_rich Low_complexity Low_complexity 1 21 0 1347 233 3 0 chrY 13801560 13801847 -10911232 + AluJo SINE Alu 1 288 -24 303 96 0 0 chrY 13801942 13801994 -10911085 + (TAA)n Simple_repeat Simple_repeat 2 53 0 1995 150 0 0 chrY 13802117 13802411 -10910668 - AluSg SINE Alu -16 294 1 195 69 0 0 chrY 13802847 13802876 -10910203 + (A)n Simple_repeat Simple_repeat 1 29 0 21 0 0 0 chrY 13803300 13803321 -10909758 + AT_rich Low_complexity Low_complexity 1 21 0 4370 248 75 41 chrY 13803358 13805155 -10907924 + L1PA7 LINE L1 10 1815 -4636 9953 148 8 19 chrY 13805167 13807285 -10905794 + L1PA7 LINE L1 4099 6204 -265 2012 147 0 3 chrY 13807285 13807599 -10905480 + AluSp SINE Alu 1 313 0 9953 148 8 19 chrY 13807599 13807858 -10905221 + L1PA7 LINE L1 6204 6464 -5 2134 145 0 0 chrY 13808164 13808475 -10904604 - AluY SINE Alu 0 311 1 2378 87 7 3 chrY 13809240 13809550 -10903529 - AluY SINE Alu 0 311 1 1191 193 8 51 chrY 13810157 13810411 -10902668 + AluJo SINE Alu 56 298 -14 442 282 70 58 chrY 13811547 13811766 -10901313 - MLT1A1 LTR MaLR 0 365 141 219 36 0 0 chrY 13811766 13811794 -10901285 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 442 282 70 58 chrY 13811794 13811833 -10901246 - MLT1A1 LTR MaLR -224 141 104 541 228 139 72 chrY 13812019 13812317 -10900762 + MLT1E LTR MaLR 312 561 -6 1201 280 31 53 chrY 13813075 13813565 -10899514 - PRIMA41-int LTR ERV1 -5315 1486 1008 725 276 93 58 chrY 13814196 13814540 -10898539 - PRIMA41-int LTR ERV1 -6440 361 6 1593 201 43 7 chrY 13814568 13814871 -10898208 + Tigger3(Golem) DNA MER2_type 2716 3029 0 1493 307 58 9 chrY 13814907 13815387 -10897692 - MLT1F1 LTR MaLR -7 560 50 6083 187 27 48 chrY 13815387 13816714 -10896365 - HSMAR2 DNA Mariner -1 1301 2 1493 307 58 9 chrY 13816714 13816767 -10896312 - MLT1F1 LTR MaLR -517 50 1 2344 148 27 3 chrY 13817102 13817467 -10895612 + Charlie3 DNA MER1_type 2333 2706 -4 287 315 39 31 chrY 13817836 13817963 -10895116 + MIR SINE MIR 11 138 -124 6230 245 70 24 chrY 13819062 13820148 -10892931 + L1MB3 LINE L1 2889 3924 -2259 414 0 0 0 chrY 13820148 13820194 -10892885 + (CA)n Simple_repeat Simple_repeat 1 46 0 6230 245 70 24 chrY 13820194 13822189 -10890890 + L1MB3 LINE L1 3924 6108 -75 245 275 135 25 chrY 13822264 13822464 -10890615 - L1M4 LINE L1 -797 5349 5128 673 187 90 0 chrY 13822477 13822632 -10890447 + L1MB3 LINE L1 6014 6182 -1 219 271 0 0 chrY 13828660 13828719 -10884360 + C-rich Low_complexity Low_complexity 1 59 0 961 332 22 2 chrY 13829088 13829504 -10883575 - PRIMA41-int LTR ERV1 -1593 6163 5740 8840 321 38 32 chrY 13829515 13830651 -10882428 - PRIMA41-int LTR ERV1 -2451 5806 4679 2494 133 5 37 chrY 13830651 13830814 -10882265 + THE1B LTR MaLR 1 168 -196 222 37 0 0 chrY 13830814 13830841 -10882238 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1785 158 4 0 chrY 13830843 13831116 -10881963 - AluSx SINE Alu -16 296 23 2494 133 5 37 chrY 13831116 13831325 -10881754 + THE1B LTR MaLR 169 364 0 8840 321 38 32 chrY 13831325 13834560 -10878519 - PRIMA41-int LTR ERV1 -3578 4679 1269 229 140 53 88 chrY 13834622 13834679 -10878400 - THE1A LTR MaLR 0 355 301 638 318 6 0 chrY 13835500 13835673 -10877406 - MER41D LTR ERV1 0 557 384 27 0 0 0 chrY 13836278 13836305 -10876774 + AT_rich Low_complexity Low_complexity 1 27 0 1757 179 3 0 chrY 13836312 13836597 -10876482 - AluSx SINE Alu -26 286 1 665 191 103 0 chrY 13836912 13837048 -10876031 + MER4B LTR ERV1 1 150 -460 21 36 0 0 chrY 13837050 13837078 -10876001 + AT_rich Low_complexity Low_complexity 1 28 0 3504 148 14 3 chrY 13837078 13837654 -10875425 - L1MA2 LINE L1 -5 7718 7137 1199 172 4 0 chrY 13837655 13837888 -10875191 - L1MA2 LINE L1 -803 6921 6688 1561 145 111 56 chrY 13837894 13837966 -10875113 - THE1C LTR MaLR 0 428 361 1809 133 4 0 chrY 13837966 13838244 -10874835 - AluSg1 SINE Alu -28 281 3 1561 145 111 56 chrY 13838244 13838565 -10874514 - THE1C LTR MaLR -67 361 1 14525 222 63 20 chrY 13838567 13839573 -10873506 - L1MA2 LINE L1 -883 6682 5721 1664 223 69 10 chrY 13839573 13839977 -10873102 - MSTA LTR MaLR 0 428 1 6790 225 32 17 chrY 13839977 13841603 -10871476 - MSTA-int LTR MaLR 0 1651 1 1778 234 29 12 chrY 13841605 13842024 -10871055 - MSTA LTR MaLR -2 426 1 14525 222 63 20 chrY 13842024 13842401 -10870678 - L1MA2 LINE L1 -1844 5721 5362 1788 168 10 0 chrY 13842401 13842710 -10870369 - AluSx SINE Alu 0 312 1 14525 222 63 20 chrY 13842710 13847709 -10865370 - L1MA2 LINE L1 -2203 5362 18 3260 187 67 13 chrY 13847715 13848432 -10864647 - L1PA16 LINE L1 -21 6145 5390 391 176 0 0 chrY 13848436 13848504 -10864575 + L1PA16 LINE L1 5304 5371 -795 602 269 234 13 chrY 13849166 13849538 -10863541 + MLT1F1 LTR MaLR 53 506 -61 32 57 0 0 chrY 13849538 13849591 -10863488 + AT_rich Low_complexity Low_complexity 1 53 0 240 222 0 0 chrY 13849594 13849639 -10863440 + MLT1F1 LTR MaLR 546 590 0 6949 37 1 0 chrY 13849848 13850877 -10862202 - L1PA2 LINE L1 -604 5551 4563 5214 23 2 3 chrY 13850878 13851500 -10861579 + L1PA2 LINE L1 5558 6155 0 237 296 169 0 chrY 13852241 13852312 -10860767 - L2 LINE L2 0 3272 3190 197 289 0 0 chrY 13852434 13852479 -10860600 - L2 LINE L2 -8 3305 3261 311 206 63 0 chrY 13853161 13853224 -10859855 - L2 LINE L2 -5 3308 3242 2174 225 21 2 chrY 13853497 13854012 -10859067 + L1PB4 LINE L1 5620 6144 -12 209 296 245 0 chrY 13854848 13854946 -10858133 - L2 LINE L2 -11 3302 3181 208 258 11 22 chrY 13855151 13855240 -10857839 - L2 LINE L2 -1231 2083 1996 309 263 0 0 chrY 13855302 13855382 -10857697 - MER103 DNA DNA -75 91 12 223 250 0 0 chrY 13855388 13855440 -10857639 + (TG)n Simple_repeat Simple_repeat 2 53 0 10083 211 16 19 chrY 13856415 13858736 -10854343 + L1PB1 LINE L1 3016 5330 -816 3054 227 35 2 chrY 13858737 13859527 -10853552 - L1PB1 LINE L1 -798 5348 4533 * 5010 138 9 5 chrY 13859514 13860323 -10852756 + L1PB1 LINE L1 5339 6150 -1 2773 150 23 4 chrY 13860312 13860792 -10852287 + L1PA14 LINE L1 5297 5785 -376 * 967 95 177 0 chrY 13860798 13860956 -10852123 + LTR66 LTR ERVL 3 188 -422 908 125 0 0 chrY 13860958 13861094 -10851985 - AluSx SINE Alu -159 153 18 2481 147 7 30 chrY 13861111 13861327 -10851752 + LTR66 LTR ERVL 191 394 -216 366 23 0 0 chrY 13861327 13861370 -10851709 + (TG)n Simple_repeat Simple_repeat 2 44 0 2481 147 7 30 chrY 13861370 13861583 -10851496 + LTR66 LTR ERVL 394 610 0 242 97 0 0 chrY 13861583 13861614 -10851465 + L1PA14 LINE L1 5782 5812 -342 1676 105 0 16 chrY 13861616 13861864 -10851215 + L1PA14 LINE L1 5912 6155 -6 400 234 0 11 chrY 13862010 13862104 -10850975 + LTR23-int LTR ERV1 3248 3340 -2991 377 205 0 39 chrY 13862182 13862260 -10850819 + LTR23-int LTR ERV1 3372 3446 -2885 413 204 69 100 chrY 13862359 13862677 -10850402 + LTR23-int LTR ERV1 1712 2093 -2970 186 43 0 0 chrY 13862739 13862762 -10850317 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1719 144 0 0 chrY 13862764 13863028 -10850051 - AluSx SINE Alu -31 281 18 29 0 0 0 chrY 13863210 13863239 -10849840 + AT_rich Low_complexity Low_complexity 1 29 0 2546 184 76 9 chrY 13863275 13863817 -10849262 + LTR23-int LTR ERV1 4985 5562 -1975 14420 203 36 41 chrY 13863835 13866986 -10846093 + L1M1 LINE L1 26 3161 -4404 2240 93 0 0 chrY 13866986 13867296 -10845783 + AluY SINE Alu 1 310 -1 14420 203 36 41 chrY 13867296 13867390 -10845689 + L1M1 LINE L1 3161 3254 -4311 697 157 52 0 chrY 13867781 13867896 -10845183 + 5S rRNA rRNA 1 121 0 356 238 0 7 chrY 13868726 13868869 -10844210 + CT-rich Low_complexity Low_complexity 2 143 0 217 310 0 0 chrY 13868884 13868971 -10844108 + (TG)n Simple_repeat Simple_repeat 2 88 0 640 144 34 8 chrY 13869691 13869809 -10843270 + 5S rRNA rRNA 1 121 0 1199 183 48 8 chrY 13870326 13874968 -10838111 - GSATX Satellite centromeric -8 4826 1 1133 192 35 14 chrY 13874982 13877198 -10835881 - GSATX Satellite centromeric -21 2264 1 367 115 0 115 chrY 13877435 13877513 -10835566 + AluSc SINE Alu 136 204 -95 220 214 0 24 chrY 13879768 13879852 -10833227 + GA-rich Low_complexity Low_complexity 2 83 0 374 335 85 52 chrY 13879858 13879927 -10833152 + HAL1 LINE L1 921 986 -1521 2186 60 19 32 chrY 13879927 13880242 -10832837 + AluY SINE Alu 1 311 0 374 335 85 52 chrY 13880242 13880560 -10832519 + HAL1 LINE L1 986 1321 -1186 1718 167 0 0 chrY 13881599 13881893 -10831186 + AluSx SINE Alu 3 296 -16 230 0 33 0 chrY 13881897 13881927 -10831152 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 1087 202 14 0 chrY 13881936 13882149 -10830930 + PABL_A LTR ERV1 445 660 0 344 190 0 0 chrY 13882149 13882207 -10830872 + Alu SINE Alu 243 300 -2 726 183 0 22 chrY 13882270 13882407 -10830672 + FRAM SINE Alu 20 153 -23 1149 200 132 4 chrY 13882561 13882826 -10830253 + ERVL LTR ERVL 3290 3588 -2176 246 159 68 0 chrY 13882846 13882858 -10830221 + Alu SINE Alu 122 136 -167 292 125 0 0 chrY 13882858 13882898 -10830181 + AluSx SINE Alu 2 41 -259 3995 107 36 2 chrY 13882898 13883457 -10829622 - LTR14C LTR ERVK 0 587 10 1490 191 0 0 chrY 13883458 13883720 -10829359 + AluSx SINE Alu 35 296 -16 23 0 0 0 chrY 13883721 13883744 -10829335 + AT_rich Low_complexity Low_complexity 1 23 0 399 191 9 3 chrY 13883755 13883836 -10829243 + AluS SINE Alu 2 63 -245 1535 168 3 66 chrY 13883894 13883932 -10829147 - AluSp SINE Alu -1 312 273 258 32 0 0 chrY 13883932 13883963 -10829116 + (TTA)n Simple_repeat Simple_repeat 2 32 0 1535 168 3 66 chrY 13883963 13884257 -10828822 - AluSp SINE Alu -40 273 1 1948 135 0 3 chrY 13884259 13884555 -10828524 - AluSg SINE Alu -14 296 2 194 81 27 0 chrY 13885318 13885355 -10827724 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 790 171 7 7 chrY 13885359 13885499 -10827580 + AluJb SINE Alu 2 141 -171 23 68 0 0 chrY 13885516 13885560 -10827519 + AT_rich Low_complexity Low_complexity 1 44 0 1117 184 137 23 chrY 13885634 13885890 -10827189 - AluJb SINE Alu -17 285 1 277 297 165 16 chrY 13886220 13886402 -10826677 + LTR54B LTR ERV1 36 244 -254 1356 203 30 0 chrY 13886465 13886736 -10826343 + AluSg SINE Alu 1 279 -31 1361 172 82 0 chrY 13887002 13887269 -10825810 + AluSx SINE Alu 1 289 -23 353 301 141 24 chrY 13887858 13888064 -10825015 + HAL1 LINE L1 1074 1303 -1204 * 363 169 6 64 chrY 13887905 13888077 -10825002 + GA-rich Low_complexity Low_complexity 2 163 0 866 255 60 17 chrY 13888086 13888194 -10824885 + AluJb SINE Alu 14 116 -196 561 15 0 0 chrY 13888194 13888260 -10824819 + (TAAAA)n Simple_repeat Simple_repeat 3 68 0 866 255 60 17 chrY 13888260 13888386 -10824693 + AluJb SINE Alu 116 258 -54 349 203 0 0 chrY 13888386 13888450 -10824629 - AluJ/FLAM SINE Alu -205 97 34 492 227 0 0 chrY 13888538 13888626 -10824453 + FRAM SINE Alu 63 150 -26 181 191 0 29 chrY 13888634 13888702 -10824377 + (TAA)n Simple_repeat Simple_repeat 1 66 0 638 192 16 24 chrY 13888805 13888930 -10824149 - AluJb SINE Alu -25 287 164 208 330 9 9 chrY 13889008 13889123 -10823956 + GA-rich Low_complexity Low_complexity 2 116 0 1587 108 5 5 chrY 13890563 13890777 -10822302 + AluSq SINE Alu 4 217 -96 1194 118 0 12 chrY 13890797 13890958 -10822121 - AluSx SINE Alu -152 160 2 1884 168 3 0 chrY 13891027 13891325 -10821754 - AluSq SINE Alu -14 299 1 875 216 16 5 chrY 13891325 13891510 -10821569 - AluJo SINE Alu -8 304 118 713 184 0 22 chrY 13891551 13891687 -10821392 - AluJo SINE Alu -169 133 1 1847 166 0 3 chrY 13891695 13892018 -10821061 - AluSx SINE Alu 0 322 1 2182 109 0 53 chrY 13892879 13893199 -10819880 - AluY SINE Alu -8 303 1 1643 194 7 7 chrY 13893199 13893498 -10819581 - AluSx SINE Alu -13 299 1 1998 141 0 0 chrY 13893854 13894131 -10818948 + AluSx SINE Alu 10 286 -26 218 188 43 0 chrY 13894131 13894200 -10818879 + (TA)n Simple_repeat Simple_repeat 1 72 0 195 162 0 0 chrY 13894471 13894508 -10818571 + A-rich Low_complexity Low_complexity 4 40 0 1156 203 4 38 chrY 13894522 13894783 -10818296 - L1 LINE L1 -3255 3593 3342 1484 138 23 0 chrY 13894805 13895023 -10818056 - AluSq SINE Alu -13 300 78 1209 171 16 16 chrY 13895035 13895286 -10817793 - L1 LINE L1 -4063 2786 2536 23 33 0 0 chrY 13896128 13896158 -10816921 + AT_rich Low_complexity Low_complexity 1 30 0 29 28 0 0 chrY 13896579 13896615 -10816464 + AT_rich Low_complexity Low_complexity 1 36 0 1715 163 7 17 chrY 13897445 13897776 -10815303 + AluSx SINE Alu 1 328 0 481 235 0 0 chrY 13897875 13897977 -10815102 - AluJ SINE Alu -79 233 132 1181 205 33 43 chrY 13897995 13898298 -10814781 + AluJo SINE Alu 2 301 -1 963 176 10 25 chrY 13898436 13898635 -10814444 + AluJo SINE Alu 96 291 -21 7136 50 0 0 chrY 13899687 13900545 -10812534 - L1P LINE L1 -1867 4279 3422 9050 42 0 9 chrY 13900570 13902434 -10810645 + L1PA3 LINE L1 4300 6155 0 258 258 174 39 chrY 13902874 13903029 -10810050 - MER5A DNA MER1_type 0 189 14 245 276 71 10 chrY 13903140 13903238 -10809841 - L3 LINE CR1 -167 1410 1307 769 176 8 0 chrY 13903329 13903460 -10809619 - AluJ SINE Alu -178 134 3 1879 133 44 10 chrY 13903503 13903830 -10809249 - AluSq SINE Alu 0 313 1 241 245 0 0 chrY 13904072 13904121 -10808958 + MIR SINE MIR 3 51 -211 890 107 23 23 chrY 13904157 13904334 -10808745 + (CACCAT)n Simple_repeat Simple_repeat 1 177 0 866 143 33 15 chrY 13904385 13904722 -10808357 + (CACCAT)n Simple_repeat Simple_repeat 1 343 0 212 264 0 0 chrY 13904725 13904778 -10808301 - MIR SINE MIR -49 213 161 7916 71 42 3 chrY 13906328 13907359 -10805720 + MER11C LTR ERVK 1 1071 0 485 292 167 0 chrY 13907419 13907470 -10805609 + MIR SINE MIR 11 52 -210 1953 176 0 0 chrY 13907470 13907776 -10805303 + AluJo SINE Alu 6 311 -1 485 292 167 0 chrY 13907776 13907940 -10805139 + MIR SINE MIR 52 262 0 199 195 37 85 chrY 13907962 13908044 -10805035 - MIR SINE MIR -8 254 177 1719 179 32 0 chrY 13908089 13908368 -10804711 - AluSx SINE Alu -24 288 1 238 294 32 82 chrY 13908369 13908492 -10804587 - MIR SINE MIR -57 151 60 1707 168 13 36 chrY 13908492 13908801 -10804278 - AluJb SINE Alu -9 303 2 238 294 32 82 chrY 13908801 13908825 -10804254 - MIR SINE MIR -148 60 36 794 286 30 8 chrY 13908859 13909093 -10803986 - MIR SINE MIR -1 261 23 1189 162 74 0 chrY 13909721 13909937 -10803142 + AluSg SINE Alu 1 232 -78 1282 171 7 96 chrY 13910310 13910602 -10802477 - MER4A LTR ERV1 0 664 399 652 352 26 20 chrY 13910599 13910946 -10802133 - LTR40a LTR ERVL -103 416 68 * 1567 177 40 17 chrY 13911209 13911508 -10801571 - AluSx SINE Alu -1 311 6 1451 275 42 31 chrY 13911726 13912442 -10800637 + L1MB4 LINE L1 4308 5031 -1115 2558 218 27 9 chrY 13912483 13913038 -10800041 + L1PA14 LINE L1 3349 3913 -2233 6085 215 27 25 chrY 13913039 13913712 -10799367 + L1PA14 LINE L1 3992 4663 -1498 1914 135 15 0 chrY 13913712 13913986 -10799093 + AluY SINE Alu 1 278 -33 195 42 0 0 chrY 13913992 13914016 -10799063 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 6085 215 27 25 chrY 13914016 13914333 -10798746 + L1PA14 LINE L1 4667 4982 -1179 425 19 19 0 chrY 13914333 13914387 -10798692 + (TAAA)n Simple_repeat Simple_repeat 3 57 0 6085 215 27 25 chrY 13914387 13914834 -10798245 + L1PA14 LINE L1 4982 5427 -734 2177 149 0 0 chrY 13914834 13915143 -10797936 + AluSc SINE Alu 1 309 0 6085 215 27 25 chrY 13915143 13915864 -10797215 + L1PA14 LINE L1 5427 6157 -4 449 269 8 0 chrY 13915866 13916000 -10797079 + L1MB4 LINE L1 5022 5156 -990 1195 208 72 74 chrY 13916090 13916563 -10796516 + L1MB4 LINE L1 5174 5629 -551 1239 204 0 5 chrY 13916630 13916850 -10796229 - AluSx SINE Alu -87 225 7 893 211 12 50 chrY 13916922 13917077 -10796002 + L1MB4 LINE L1 5675 5819 -361 1285 243 3 26 chrY 13917077 13917382 -10795697 + AluJb SINE Alu 2 299 -13 893 211 12 50 chrY 13917382 13917468 -10795611 + L1MB4 LINE L1 5819 5907 -273 285 225 62 0 chrY 13918146 13918226 -10794853 + L1M4 LINE L1 3511 3595 -2551 1043 291 47 19 chrY 13918235 13918706 -10794373 + L1M4 LINE L1 3842 4325 -1821 2208 112 10 0 chrY 13918747 13919050 -10794029 - AluSp SINE Alu -7 306 1 517 266 58 0 chrY 13919050 13919204 -10793875 + MER93a LTR ERV1 220 382 -20 1897 134 26 7 chrY 13919211 13919516 -10793563 - AluY SINE Alu 0 311 1 283 283 34 45 chrY 13920484 13920668 -10792411 + HERVFH21 LTR ERV1 676 1530 -6727 484 253 91 81 chrY 13921422 13921805 -10791274 + HERVFH21 LTR ERV1 1765 2151 -4378 346 296 91 56 chrY 13922041 13922611 -10790468 + HERVFH21 LTR ERV1 5182 5769 -1155 422 244 92 23 chrY 13924108 13924282 -10788797 + HERVFH21 LTR ERV1 7001 8266 -261 304 247 25 0 chrY 13924482 13924563 -10788516 + HERVFH21 LTR ERV1 6446 6528 -1 237 178 0 0 chrY 13925398 13925443 -10787636 + C-rich Low_complexity Low_complexity 2 46 0 619 160 7 69 chrY 13925477 13925621 -10787458 - L1PA8A LINE L1 0 6131 5997 252 114 0 0 chrY 13925621 13925656 -10787423 - Alu SINE Alu -263 39 5 5411 123 16 35 chrY 13925657 13926369 -10786710 - L1PA8 LINE L1 -87 6085 5361 1598 163 58 14 chrY 13926369 13926664 -10786415 - AluSg SINE Alu -2 308 1 5411 123 16 35 chrY 13926664 13927030 -10786049 - L1PA8 LINE L1 -811 5361 5043 1584 172 3 56 chrY 13927030 13927332 -10785747 + AluSg SINE Alu 1 286 -24 5411 123 16 35 chrY 13927332 13927691 -10785388 - L1PA8 LINE L1 -1129 5043 4679 218 292 28 0 chrY 13927701 13927773 -10785306 - MIR SINE MIR -81 127 54 290 195 0 61 chrY 13928423 13928505 -10784574 - AluJ/FRAM SINE Alu 0 302 226 1387 228 0 4 chrY 13928543 13928819 -10784260 + AluJo SINE Alu 1 275 -37 456 172 0 0 chrY 13928819 13928906 -10784173 + (TG)n Simple_repeat Simple_repeat 2 88 0 1819 164 4 4 chrY 13933432 13933773 -10779306 - AluSg SINE Alu 0 342 2 20940 131 48 13 chrY 13983778 13987207 -10725872 - L1P LINE L1 -2597 3549 1 1050 177 4 1 chrY 13987208 13988312 -10724767 - ALR/Alpha Satellite centromeric 0 1107 1 5702 134 17 4 chrY 13988312 13989701 -10723378 - HERVK14C LTR ERVK -5928 1489 1 3949 123 19 0 chrY 13989701 13990277 -10722802 - LTR14C LTR ERVK 0 587 1 1103 163 8 8 chrY 13990277 13991476 -10721603 - ALR/Alpha Satellite centromeric 0 2791 1594 1973 145 0 7 chrY 13991476 13991786 -10721293 - AluY SINE Alu -3 308 1 1103 163 8 8 chrY 13991786 13993068 -10720011 - ALR/Alpha Satellite centromeric -1197 1594 1 1182 168 9 7 chrY 13993079 14003004 -10710075 - ALR/Alpha Satellite centromeric -1 9937 1 2941 125 0 0 chrY 14003004 14003427 -10709652 + HERVK11 LTR ERVK 4179 4601 -3352 * 8303 100 6 0 chrY 14003425 14004609 -10708470 + HERVK11 LTR ERVK 5525 6767 -1186 7078 106 7 0 chrY 14004594 14005584 -10707495 + HERVK11 LTR ERVK 6957 7953 0 * 5779 148 23 33 chrY 14005584 14006662 -10706417 + MER11C LTR ERVK 1 1067 -4 986 181 7 5 chrY 14006676 14008027 -10705052 - ALR/Alpha Satellite centromeric -31 1353 1 204 40 0 0 chrY 14008060 14008085 -10704994 + (TTA)n Simple_repeat Simple_repeat 3 27 0 2152 66 0 0 chrY 14008085 14008356 -10704723 - L1PA4 LINE L1 -18 6137 5867 36363 73 5 86 chrY 14008356 14010040 -10703039 - L1PA4 LINE L1 -517 5638 3820 1647 25 0 0 chrY 14010040 14010238 -10702841 - L1PA2 LINE L1 0 6155 5958 36363 73 5 86 chrY 14010238 14014693 -10698386 - L1PA4 LINE L1 -2335 3820 4 1028 167 14 6 chrY 14014693 14017460 -10695619 - ALR/Alpha Satellite centromeric 0 2789 1 1094 167 13 5 chrY 14017474 14023298 -10689781 - ALR/Alpha Satellite centromeric 0 6287 383 207 0 0 0 chrY 14023298 14023321 -10689758 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1094 167 13 5 chrY 14023321 14023708 -10689371 - ALR/Alpha Satellite centromeric -5904 383 1 2027 124 27 10 chrY 14023869 14024167 -10688912 + AluY SINE Alu 1 303 -8 22 0 0 0 chrY 14024422 14024444 -10688635 + AT_rich Low_complexity Low_complexity 1 22 0 42202 58 2 1 chrY 14026843 14032992 -10680087 + L1PA3 LINE L1 2 6155 0 1120 249 90 4 chrY 14033292 14033569 -10679510 + AluSx SINE Alu 1 301 -11 35 24 0 0 chrY 14033716 14033758 -10679321 + AT_rich Low_complexity Low_complexity 1 42 0 1713 192 0 7 chrY 14033900 14034065 -10679014 - AluSq SINE Alu -23 290 126 207 0 0 0 chrY 14034065 14034088 -10678991 + (TG)n Simple_repeat Simple_repeat 2 24 0 1713 192 0 7 chrY 14034088 14034214 -10678865 - AluSq SINE Alu -187 126 1 433 272 208 0 chrY 14034524 14034649 -10678430 + AluSq SINE Alu 137 287 -26 2278 284 19 12 chrY 14034843 14035434 -10677645 - MER52A LTR ERV1 0 1755 1161 425 203 0 0 chrY 14035435 14035514 -10677565 + HERVL LTR ERVL 710 788 -4866 1829 108 101 21 chrY 14035907 14036193 -10676886 - AluY SINE Alu -2 309 1 239 255 0 0 chrY 14036436 14036487 -10676592 - MER20 DNA MER1_type -73 146 96 316 323 60 65 chrY 14036524 14036725 -10676354 + L2 LINE L2 2763 2962 -352 21 36 0 0 chrY 14037537 14037565 -10675514 + AT_rich Low_complexity Low_complexity 1 28 0 430 282 145 55 chrY 14037788 14038263 -10674816 + L1M4c LINE L1 1983 2500 -3884 829 126 8 0 chrY 14038409 14038528 -10674551 + AluY SINE Alu 1 120 -191 189 0 0 0 chrY 14038528 14038549 -10674530 + (CA)n Simple_repeat Simple_repeat 2 22 0 1642 171 4 0 chrY 14038561 14038841 -10674238 + AluSc SINE Alu 21 301 0 1599 259 96 9 chrY 14038841 14039783 -10673296 + L1M4 LINE L1 1088 2211 -4173 1661 326 45 18 chrY 14041767 14042433 -10670646 - MER52A LTR ERV1 -149 1606 923 406 362 53 4 chrY 14042400 14042582 -10670497 - MER52A LTR ERV1 -658 1097 925 * 1517 208 11 0 chrY 14042582 14042861 -10670218 + AluSp SINE Alu 2 283 -30 386 68 0 17 chrY 14042864 14042923 -10670156 + (TAAA)n Simple_repeat Simple_repeat 2 59 0 406 362 53 4 chrY 14042923 14043001 -10670078 - MER52A LTR ERV1 -831 924 820 349 207 16 36 chrY 14043011 14043327 -10669752 + (CCCTAA)n Simple_repeat Simple_repeat 1 309 0 214 193 12 24 chrY 14043436 14043519 -10669560 + (CCCTAA)n Simple_repeat Simple_repeat 6 87 0 182 192 20 20 chrY 14043607 14043706 -10669373 + (CCCTAA)n Simple_repeat Simple_repeat 4 102 0 198 227 5 38 chrY 14043821 14044006 -10669073 + (CCCTAA)n Simple_repeat Simple_repeat 2 180 0 308 200 32 8 chrY 14044032 14044157 -10668922 + (CCCTAA)n Simple_repeat Simple_repeat 3 130 0 597 295 73 23 chrY 14044546 14045065 -10668014 + L1M4 LINE L1 4091 4635 -1747 22 0 0 0 chrY 14045650 14045672 -10667407 + AT_rich Low_complexity Low_complexity 1 22 0 1023 231 97 7 chrY 14045981 14046250 -10666829 + AluJb SINE Alu 19 311 -1 21 36 0 0 chrY 14046579 14046607 -10666472 + AT_rich Low_complexity Low_complexity 1 28 0 2161 175 34 79 chrY 14046639 14047256 -10665823 + MER4B LTR ERV1 1 754 -25 392 284 51 47 chrY 14048313 14048528 -10664551 + L1ME2 LINE L1 4296 4511 -1635 989 207 103 16 chrY 14048530 14048772 -10664307 + AluJb SINE Alu 3 265 -47 270 0 0 0 chrY 14048784 14048814 -10664265 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 291 272 88 22 chrY 14048909 14049181 -10663898 + L1ME2 LINE L1 4670 4959 -1187 1093 253 0 4 chrY 14049372 14049629 -10663450 + AluSx SINE Alu 36 291 -21 321 251 107 2 chrY 14049645 14049820 -10663259 + L1ME2 LINE L1 5188 5381 -765 5246 138 36 7 chrY 14050338 14051634 -10661445 - L1PA8 LINE L1 -7 6480 5141 15974 185 26 42 chrY 14051637 14053168 -10659911 - L1PA8 LINE L1 -1582 4879 3326 1216 240 6 41 chrY 14053168 14053485 -10659594 - AluSx SINE Alu -6 306 1 15974 185 26 42 chrY 14053485 14054578 -10658501 - L1PA8 LINE L1 -3135 3326 2218 1940 131 10 29 chrY 14054578 14054891 -10658188 - AluY SINE Alu -2 309 3 15974 185 26 42 chrY 14054891 14057181 -10655898 - L1PA8 LINE L1 -4243 2218 6 1572 174 75 6 chrY 14057542 14057875 -10655204 + LTR22B LTR ERVK 1 356 -136 465 165 0 12 chrY 14057881 14057966 -10655113 + AluY SINE Alu 210 293 -18 320 235 29 10 chrY 14058053 14058155 -10654924 - L1MB3 LINE L1 -10 6173 6070 237 226 0 0 chrY 14058151 14058213 -10654866 - L1MB3 LINE L1 -612 5559 5498 * 225 219 16 47 chrY 14058244 14058308 -10654771 - MER50 LTR ERV1 -663 71 10 514 269 56 53 chrY 14059095 14059489 -10653590 + L1ME2 LINE L1 5583 5980 -184 252 0 0 0 chrY 14060347 14060375 -10652704 + (A)n Simple_repeat Simple_repeat 1 28 0 24 32 0 0 chrY 14061328 14061359 -10651720 + AT_rich Low_complexity Low_complexity 1 31 0 293 291 153 41 chrY 14062237 14062433 -10650646 - MIR SINE MIR -1 261 44 4503 86 0 0 chrY 14063307 14063892 -10649187 + LTR14C LTR ERVK 3 587 0 416 115 0 0 chrY 14064138 14064199 -10648880 + Alu SINE Alu 234 294 -15 30102 135 13 16 chrY 14064238 14070402 -10642677 + L1PA6 LINE L1 11 6144 -10 24 0 0 0 chrY 14070403 14070427 -10642652 + AT_rich Low_complexity Low_complexity 1 24 0 812 248 33 5 chrY 14070539 14070749 -10642330 + MSTB1 LTR MaLR 1 216 -216 2769 243 91 18 chrY 14070753 14071346 -10641733 - L1MB1 LINE L1 -262 6109 5561 3915 114 12 2 chrY 14071346 14071927 -10641152 - LTR14C LTR ERVK 0 587 1 2769 243 91 18 chrY 14071927 14072979 -10640100 - L1MB1 LINE L1 -810 5561 4330 2073 276 36 30 chrY 14072955 14073297 -10639782 - L1MB1 LINE L1 -2945 3383 3045 * 2207 107 0 3 chrY 14073297 14073595 -10639484 + AluY SINE Alu 1 297 -14 2073 276 36 30 chrY 14073595 14074545 -10638534 - L1MB1 LINE L1 -3283 3045 2083 278 234 56 9 chrY 14074648 14074755 -10638324 - L1MB1 LINE L1 -4767 1561 1450 261 0 0 0 chrY 14074755 14074784 -10638295 + (T)n Simple_repeat Simple_repeat 1 29 0 3328 256 30 52 chrY 14076690 14076980 -10636099 - L1MB1 LINE L1 -4065 1263 968 1689 197 0 3 chrY 14076980 14077302 -10635777 - AluSx SINE Alu 0 312 14 3328 256 30 52 chrY 14077302 14078439 -10634640 - L1MB1 LINE L1 -4360 968 56 454 286 97 9 chrY 14078530 14078747 -10634332 - L1M4 LINE L1 -3058 3586 3351 1475 198 34 0 chrY 14078781 14079049 -10634030 + AluSx SINE Alu 1 277 -35 186 171 0 0 chrY 14079072 14079113 -10633966 + A-rich Low_complexity Low_complexity 1 41 0 738 288 42 47 chrY 14079119 14079522 -10633557 - L1M4 LINE L1 -3330 3314 2914 296 291 87 21 chrY 14079611 14079992 -10633087 - L1M4 LINE L1 -3951 2695 2290 822 246 131 11 chrY 14080053 14080313 -10632766 - AluJo SINE Alu -12 300 10 1350 279 63 37 chrY 14080326 14081561 -10631518 - L1M4 LINE L1 -4488 2158 858 229 51 51 0 chrY 14081589 14081628 -10631451 + A-rich Low_complexity Low_complexity 5 45 0 710 256 54 10 chrY 14081772 14081975 -10631104 + AluJb SINE Alu 3 214 -98 451 252 9 9 chrY 14081976 14082091 -10630988 + AluJb SINE Alu 168 282 -30 444 314 135 38 chrY 14082127 14082601 -10630478 - L1M4 LINE L1 -5939 603 84 1915 157 0 0 chrY 14082712 14082998 -10630081 - AluSx SINE Alu -24 288 3 29 104 0 0 chrY 14083606 14083712 -10629367 + AT_rich Low_complexity Low_complexity 1 106 0 22 0 0 0 chrY 14083934 14083956 -10629123 + AT_rich Low_complexity Low_complexity 1 22 0 504 281 118 0 chrY 14084621 14084774 -10628305 + FAM SINE Alu 1 171 -4 222 236 0 0 chrY 14084775 14084830 -10628249 + GA-rich Low_complexity Low_complexity 4 58 0 200 356 144 11 chrY 14084911 14085189 -10627890 - L2 LINE L2 -1265 2049 1735 1226 193 105 28 chrY 14085245 14085530 -10627549 + AluSx SINE Alu 5 311 -1 876 202 39 82 chrY 14085967 14086142 -10626937 - L1MA7 LINE L1 0 6291 6142 1621 198 0 0 chrY 14086142 14086430 -10626649 - AluSq SINE Alu -25 288 1 876 202 39 82 chrY 14086430 14086606 -10626473 - L1MA7 LINE L1 -149 6142 5960 594 267 7 7 chrY 14086621 14086767 -10626312 - FRAM SINE Alu -30 146 1 1536 173 34 20 chrY 14086782 14087134 -10625945 - L1MA7 LINE L1 -339 5952 5596 268 206 0 65 chrY 14087159 14087251 -10625828 + L1 LINE L1 5097 5182 -964 246 375 23 8 chrY 14088841 14088969 -10624110 - L2 LINE L2 -721 2593 2464 542 281 168 0 chrY 14089459 14089644 -10623435 + AluSp SINE Alu 1 216 -97 668 282 60 31 chrY 14090032 14090571 -10622508 + L1M3e LINE L1 1967 2770 -4726 1369 211 3 61 chrY 14090571 14090883 -10622196 + AluSq SINE Alu 1 294 -19 668 282 60 31 chrY 14090883 14091096 -10621983 + L1M3e LINE L1 2770 2975 -4521 1281 270 113 7 chrY 14091133 14091734 -10621345 + L1M3e LINE L1 3894 4558 -3007 4578 224 63 46 chrY 14091794 14093327 -10619752 + L1M3e LINE L1 4867 6425 -1140 450 359 0 0 chrY 14093327 14093472 -10619607 + FRAM SINE Alu 1 145 -31 592 243 20 48 chrY 14093472 14093826 -10619253 + L1M3e LINE L1 6397 6740 -825 204 40 0 0 chrY 14093871 14093896 -10619183 + (TG)n Simple_repeat Simple_repeat 1 25 0 216 0 0 0 chrY 14093909 14093933 -10619146 + (CA)n Simple_repeat Simple_repeat 2 25 0 1216 202 14 0 chrY 14093970 14094193 -10618886 - AluSx SINE Alu -86 226 1 1643 171 0 0 chrY 14094258 14094522 -10618557 + AluSg SINE Alu 2 265 -45 22 35 0 0 chrY 14094943 14094972 -10618107 + AT_rich Low_complexity Low_complexity 1 29 0 36 0 0 0 chrY 14097625 14097661 -10615418 + AT_rich Low_complexity Low_complexity 1 36 0 1127 246 52 7 chrY 14097673 14097962 -10615117 - AluJo SINE Alu 0 302 1 851 296 98 22 chrY 14098012 14098471 -10614608 + L2 LINE L2 2163 2656 -658 622 267 17 0 chrY 14098504 14098680 -10614399 - L1MB7 LINE L1 -21 6163 5985 865 183 33 70 chrY 14099027 14099240 -10613839 - AluSg/x SINE Alu -37 275 71 2565 58 3 0 chrY 14099477 14099787 -10613292 - AluY SINE Alu 0 311 1 291 106 99 0 chrY 14100819 14100970 -10612109 + (TA)n Simple_repeat Simple_repeat 2 167 0 386 137 46 30 chrY 14100974 14101105 -10611974 + (TTATA)n Simple_repeat Simple_repeat 1 133 0 331 98 104 0 chrY 14101110 14101273 -10611806 + (TA)n Simple_repeat Simple_repeat 1 180 0 207 130 70 9 chrY 14101285 14101400 -10611679 + (TA)n Simple_repeat Simple_repeat 1 122 0 27 0 0 0 chrY 14101926 14101953 -10611126 + AT_rich Low_complexity Low_complexity 1 27 0 1172 244 21 37 chrY 14103389 14103824 -10609255 + L1MA4 LINE L1 5862 6289 -11 1296 295 82 82 chrY 14104108 14105235 -10607844 + MER21-int LTR ERV1 2054 3180 -1011 26 30 0 0 chrY 14105575 14105608 -10607471 + AT_rich Low_complexity Low_complexity 1 33 0 1371 209 46 7 chrY 14105867 14106150 -10606929 + AluSp SINE Alu 1 294 -9 946 106 17 22 chrY 14106153 14106332 -10606747 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 25 0 0 0 chrY 14106776 14106801 -10606278 + AT_rich Low_complexity Low_complexity 1 25 0 975 170 0 0 chrY 14107485 14107650 -10605429 - U1 snRNA snRNA 0 165 1 485 267 6 56 chrY 14108324 14108485 -10604594 - FRAM SINE Alu -20 156 4 1242 168 10 0 chrY 14109959 14110161 -10602918 + AluSg/x SINE Alu 77 280 -29 328 322 54 50 chrY 14111072 14111370 -10601709 + MER46C DNA MER2_type 1 299 -39 352 267 13 0 chrY 14114998 14115073 -10598006 - AluS SINE Alu -225 78 3 1599 196 3 7 chrY 14115663 14115969 -10597110 + AluSx SINE Alu 8 312 0 661 265 58 24 chrY 14117354 14117778 -10595301 + MLT1C LTR MaLR 2 460 -7 756 198 34 113 chrY 14119946 14120184 -10592895 + AluJo SINE Alu 4 222 -90 319 54 0 36 chrY 14120199 14120255 -10592824 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 206 307 83 20 chrY 14120415 14120520 -10592559 + MIR SINE MIR 18 130 -78 227 281 0 31 chrY 14120552 14120616 -10592463 + L2 LINE L2 3251 3312 -1 371 289 78 0 chrY 14120643 14120785 -10592294 + MER58B DNA MER1_type 189 341 0 189 107 36 18 chrY 14121051 14121107 -10591972 + (TG)n Simple_repeat Simple_repeat 2 58 0 454 222 234 23 chrY 14121515 14121686 -10591393 + MER3 DNA MER1_type 3 209 0 247 192 19 0 chrY 14121644 14121696 -10591383 - MER3 DNA MER1_type -119 90 38 * 1197 205 31 0 chrY 14121708 14121932 -10591147 - AluSx SINE Alu -66 246 16 248 146 49 0 chrY 14121957 14121998 -10591081 - Alu SINE Alu -90 43 1 1379 263 54 23 chrY 14122333 14122774 -10590305 + MLT1D LTR MaLR 28 482 -23 9668 52 14 2 chrY 14122802 14124820 -10588259 - L1PA4 LINE L1 0 6155 4128 11392 71 1 6 chrY 14124839 14126332 -10586747 - L1PA4 LINE L1 -4648 1498 14 207 0 0 0 chrY 14126754 14126777 -10586302 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 836 232 48 0 chrY 14127104 14127311 -10585768 + MER20 DNA MER1_type 3 219 0 723 196 0 0 chrY 14129446 14129604 -10583475 + CT-rich Low_complexity Low_complexity 4 161 0 1083 209 14 0 chrY 14130419 14130634 -10582445 - L1MC1 LINE L1 -8 6325 6108 1704 175 18 7 chrY 14130726 14131011 -10582068 - AluSx SINE Alu -22 290 3 359 331 76 0 chrY 14131110 14131267 -10581812 - FAM SINE Alu -6 169 1 389 272 24 0 chrY 14131275 14131400 -10581679 - FLAM_C SINE Alu 0 133 6 192 77 0 0 chrY 14132924 14132950 -10580129 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 249 139 0 0 chrY 14133029 14133072 -10580007 + (GGAA)n Simple_repeat Simple_repeat 2 44 0 589 221 48 28 chrY 14133231 14133353 -10579726 + AluJo SINE Alu 3 130 -182 288 53 0 0 chrY 14133353 14133391 -10579688 + (TAA)n Simple_repeat Simple_repeat 2 39 0 589 221 48 28 chrY 14133391 14133413 -10579666 + AluJo SINE Alu 130 150 -162 305 215 82 138 chrY 14133435 14133630 -10579449 - L1MC4 LINE L1 -17 8025 7842 404 326 96 57 chrY 14135692 14135993 -10577086 + L2 LINE L2 2941 3253 -19 1196 279 25 0 chrY 14136221 14136504 -10576575 + AluJb SINE Alu 1 290 -12 1637 192 3 7 chrY 14136667 14136964 -10576115 - AluSq SINE Alu -17 296 1 1722 176 3 19 chrY 14137084 14137391 -10575688 - AluSg SINE Alu -8 302 1 234 335 177 6 chrY 14137893 14138057 -10575022 - L3 LINE CR1 -1195 382 191 295 111 0 93 chrY 14138658 14138712 -10574367 - FLAM SINE Alu -3 130 83 22 35 0 0 chrY 14140982 14141011 -10572068 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chrY 14141039 14141063 -10572016 + AT_rich Low_complexity Low_complexity 1 24 0 28 0 0 0 chrY 14141270 14141298 -10571781 + AT_rich Low_complexity Low_complexity 1 28 0 1858 244 62 54 chrY 14341339 14342112 -10370967 - LTR25-int LTR ERV1 -6118 878 100 1408 189 21 24 chrY 14342229 14342520 -10370559 - AluY SINE Alu -21 290 1 712 255 100 93 chrY 14342588 14343126 -10369953 - LTR25 LTR ERV1 0 794 253 22 0 0 0 chrY 14343190 14343212 -10369867 + AT_rich Low_complexity Low_complexity 1 22 0 1592 272 19 55 chrY 14343335 14344064 -10369015 + LTR25-int LTR ERV1 1846 2548 -4448 1260 360 6 0 chrY 14344066 14344541 -10368538 + MER52A LTR ERV1 1278 1755 0 550 267 8 0 chrY 14344550 14344681 -10368398 + MER21B LTR ERV1 247 378 -485 1137 224 67 70 chrY 14347563 14347819 -10365260 - L1M4c LINE L1 -4188 2196 1941 2145 85 0 11 chrY 14347819 14348146 -10364933 - AluY SINE Alu 0 324 1 1137 224 67 70 chrY 14348146 14348779 -10364300 - L1M4c LINE L1 -4443 1941 1214 1187 265 42 0 chrY 14348945 14349303 -10363776 - LTR25 LTR ERV1 0 794 422 325 153 34 0 chrY 14349299 14349358 -10363721 - LTR25 LTR ERV1 -253 541 481 * 1861 145 3 27 chrY 14350635 14350961 -10362118 - AluY SINE Alu 0 319 1 1141 272 110 21 chrY 14351389 14352554 -10360525 - L1M4c LINE L1 -4204 2180 812 22 0 0 0 chrY 14352660 14352682 -10360397 + AT_rich Low_complexity Low_complexity 1 22 0 1232 307 99 27 chrY 14352749 14353003 -10360076 - L1M4c LINE L1 -5536 848 614 357 24 0 0 chrY 14353003 14353045 -10360034 + (TG)n Simple_repeat Simple_repeat 1 42 0 1232 307 99 27 chrY 14353045 14353561 -10359518 - L1M4c LINE L1 -5770 614 23 345 350 70 11 chrY 14354789 14354975 -10358104 - L2 LINE L2 -352 2962 2766 268 228 0 0 chrY 14355021 14355078 -10358001 + MER20 DNA MER1_type 90 146 -73 180 152 0 0 chrY 14356411 14356444 -10356635 + (TTA)n Simple_repeat Simple_repeat 1 33 0 180 0 0 0 chrY 14356719 14356739 -10356340 + (T)n Simple_repeat Simple_repeat 1 20 0 34087 83 8 6 chrY 14356923 14361877 -10351202 + L1P LINE L1 44 5005 -1141 * 39219 62 2 15 chrY 14361876 14368109 -10344970 + L1PA4 LINE L1 3 6153 -2 238 250 0 0 chrY 14368162 14368210 -10344869 + (TG)n Simple_repeat Simple_repeat 1 48 0 1424 182 89 29 chrY 14368210 14368590 -10344489 - MLT2A1 LTR ERVL -41 403 1 10513 156 6 20 chrY 14368590 14370462 -10342617 - HERVL-A1 LTR ERVL 0 5654 3810 2112 172 21 3 chrY 14370456 14370845 -10342234 - HERVL-A1 LTR ERVL -2058 3596 3201 * 826 188 0 0 chrY 14370833 14370987 -10342092 - HERVL LTR ERVL -998 4656 4503 * 8977 193 26 5 chrY 14370985 14372770 -10340309 - HERVL LTR ERVL -2454 3200 1378 765 189 7 7 chrY 14372771 14372924 -10340155 - MLT2A1 LTR ERVL -291 153 1 * 889 271 47 103 chrY 14372924 14373447 -10339632 + MER52A LTR ERV1 645 1114 -164 3069 276 43 1 chrY 14373415 14374222 -10338857 + MER52A LTR ERV1 915 1755 0 297 250 10 21 chrY 14374517 14374613 -10338466 - MER20 DNA MER1_type -24 195 101 180 0 0 0 chrY 14374626 14374646 -10338433 + (T)n Simple_repeat Simple_repeat 1 20 0 1013 210 23 37 chrY 14374727 14375027 -10338052 + L1PA10 LINE L1 5483 5778 -390 686 207 0 0 chrY 14375043 14375178 -10337901 + L1PA10 LINE L1 6022 6156 -12 185 0 0 39 chrY 14375179 14375205 -10337874 + (TTAAA)n Simple_repeat Simple_repeat 1 25 0 1107 239 98 11 chrY 14375354 14375630 -10337449 - AluSx SINE Alu -2 300 1 279 0 0 0 chrY 14376937 14376968 -10336111 + (TA)n Simple_repeat Simple_repeat 1 31 0 222 37 0 0 chrY 14377884 14377911 -10335168 + (T)n Simple_repeat Simple_repeat 1 27 0 3000 200 2 2 chrY 14378109 14378665 -10334414 + THE1B-int LTR MaLR 1025 1580 0 1068 216 120 30 chrY 14378665 14378999 -10334080 + THE1B LTR MaLR 1 364 0 822 274 17 47 chrY 14379232 14379406 -10333673 - AluJo SINE Alu -17 295 132 531 0 0 0 chrY 14379406 14379465 -10333614 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 822 274 17 47 chrY 14379465 14379589 -10333490 - AluJo SINE Alu -180 132 6 22 0 0 0 chrY 14380295 14380317 -10332762 + AT_rich Low_complexity Low_complexity 1 22 0 573 0 39 0 chrY 14380874 14380951 -10332128 + (TC)n Simple_repeat Simple_repeat 1 80 0 950 231 0 13 chrY 14380963 14381188 -10331891 - AluSq SINE Alu -11 302 81 1988 122 3 34 chrY 14381218 14381538 -10331541 + AluY SINE Alu 1 310 -1 219 36 0 0 chrY 14382433 14382461 -10330618 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 243 111 0 0 chrY 14382478 14382514 -10330565 + Charlie3 DNA MER1_type 2659 2694 -16 671 313 104 20 chrY 14383203 14383452 -10329627 - AluJb SINE Alu -41 271 2 316 296 23 0 chrY 14383468 14383556 -10329523 - L1MC4 LINE L1 -1339 6703 6614 231 217 29 14 chrY 14383556 14383625 -10329454 + (TA)n Simple_repeat Simple_repeat 2 71 0 554 189 0 0 chrY 14383854 14383949 -10329130 - AluJb SINE Alu -131 181 87 26 30 0 0 chrY 14386074 14386107 -10326972 + AT_rich Low_complexity Low_complexity 1 33 0 26 30 0 0 chrY 14386338 14386371 -10326708 + AT_rich Low_complexity Low_complexity 1 33 0 390 91 0 0 chrY 14387347 14387402 -10325677 + (GAA)n Simple_repeat Simple_repeat 3 57 0 28 0 0 0 chrY 14387576 14387604 -10325475 + AT_rich Low_complexity Low_complexity 1 28 0 2192 89 3 3 chrY 14387881 14388184 -10324895 - AluY SINE Alu -8 303 1 23 0 0 0 chrY 14388560 14388583 -10324496 + AT_rich Low_complexity Low_complexity 1 23 0 1121 251 94 4 chrY 14389439 14389706 -10323373 + AluSx SINE Alu 11 301 -11 258 164 30 60 chrY 14389868 14389935 -10323144 - L1PA10 LINE L1 -1 6167 6103 1691 138 20 61 chrY 14389996 14390316 -10322763 - AluSq SINE Alu 0 308 1 339 261 130 17 chrY 14390386 14390501 -10322578 + MER20 DNA MER1_type 25 152 -67 298 0 48 0 chrY 14390514 14390556 -10322523 + (CAAA)n Simple_repeat Simple_repeat 4 47 0 2309 279 12 3 chrY 14390895 14391490 -10321589 - MER52A LTR ERV1 0 1755 1156 15901 177 12 3 chrY 14391490 14395855 -10317224 + HERVL-A1 LTR ERVL 714 5225 -429 801 122 0 0 chrY 14395857 14396004 -10317075 + (CAAG)n Simple_repeat Simple_repeat 2 148 0 * 815 157 0 6 chrY 14395995 14396161 -10316918 + GA-rich Low_complexity Low_complexity 2 166 0 2025 169 32 0 chrY 14396176 14396583 -10316496 + HERVL-A1 LTR ERVL 5235 5654 0 808 209 59 14 chrY 14396583 14396803 -10316276 + MLT2A1 LTR ERVL 1 230 -214 368 353 59 5 chrY 14397854 14398041 -10315038 + L2 LINE L2 2766 2962 -352 363 288 109 62 chrY 14399200 14399586 -10313493 + L1M4c LINE L1 2091 2494 -3890 1208 291 86 38 chrY 14399643 14400402 -10312677 + L1M4c LINE L1 49 849 -5535 2485 43 23 3 chrY 14400402 14400707 -10312372 + AluY SINE Alu 1 311 0 1208 291 86 38 chrY 14400707 14400736 -10312343 + L1M4c LINE L1 849 875 -5509 396 0 0 0 chrY 14400744 14400788 -10312291 + (GAAA)n Simple_repeat Simple_repeat 2 45 0 312 302 55 64 chrY 14400788 14401023 -10312056 + L1M4c LINE L1 823 1055 -5329 243 0 0 0 chrY 14401038 14401065 -10312014 + (TC)n Simple_repeat Simple_repeat 2 28 0 234 136 0 0 chrY 14401066 14401110 -10311969 + (TCTA)n Simple_repeat Simple_repeat 2 45 0 459 150 43 0 chrY 14401139 14401279 -10311800 + (TA)n Simple_repeat Simple_repeat 1 146 0 1309 259 155 14 chrY 14401279 14401322 -10311757 + L1M4c LINE L1 1051 1087 -5297 1640 197 7 3 chrY 14401322 14401621 -10311458 + AluSc SINE Alu 1 300 -9 1309 259 155 14 chrY 14401621 14401717 -10311362 + L1M4c LINE L1 1087 1168 -5216 213 39 0 0 chrY 14401717 14401743 -10311336 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 1309 259 155 14 chrY 14401743 14402292 -10310787 + L1M4c LINE L1 1168 1837 -4547 1938 231 45 16 chrY 14402334 14402940 -10310139 + L1MB5 LINE L1 5542 6164 -10 947 208 23 9 chrY 14403111 14403332 -10309747 - MER50 LTR ERV1 0 734 511 554 235 17 17 chrY 14403340 14403519 -10309560 - L1M4 LINE L1 -901 5245 5067 527 160 73 132 chrY 14403492 14403711 -10309368 + L1M4 LINE L1 5354 5559 -625 * 314 212 61 0 chrY 14403705 14403804 -10309275 + L1MB3 LINE L1 6068 6172 -11 * 1276 243 67 49 chrY 14404067 14404635 -10308444 - L1MC3 LINE L1 -1822 5963 5386 3539 39 28 0 chrY 14404761 14405222 -10307857 + L1P LINE L1 4555 5028 -1118 1450 201 7 13 chrY 14405350 14405692 -10307387 - AluSx SINE Alu 0 340 1 309 244 56 22 chrY 14406045 14406135 -10306944 - L1MC3 LINE L1 -2607 5388 5296 241 45 23 23 chrY 14406230 14406274 -10306805 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 820 217 0 53 chrY 14406279 14406468 -10306611 - AluSg/x SINE Alu -24 288 110 2334 159 7 16 chrY 14406468 14406901 -10306178 - LTR3 LTR ERVK 0 429 1 10065 220 31 27 chrY 14406904 14411059 -10302020 - HERVK3 LTR ERVK -2 7241 2914 189 107 0 0 chrY 14411130 14411158 -10301921 + (TATATG)n Simple_repeat Simple_repeat 2 29 0 233 257 18 37 chrY 14411164 14411273 -10301806 - L1MC4 LINE L1 -1339 6703 6597 232 267 35 0 chrY 14411314 14411400 -10301679 - L1MC4 LINE L1 -1340 6702 6614 245 253 0 10 chrY 14411435 14411534 -10301545 + (TA)n Simple_repeat Simple_repeat 1 98 0 33064 75 18 1 chrY 14411535 14416204 -10296875 + L1PA4 LINE L1 7 4754 -1392 6867 64 1 2 chrY 14416205 14417563 -10295516 + L1PA4 LINE L1 4799 6155 0 3180 216 67 36 chrY 14417569 14418562 -10294517 - L1P LINE L1 -3857 2289 1267 246 65 0 0 chrY 14418579 14418610 -10294469 - Alu SINE Alu -15 284 254 27 0 0 0 chrY 14419126 14419153 -10293926 + AT_rich Low_complexity Low_complexity 1 27 0 1656 185 3 7 chrY 14419244 14419541 -10293538 + AluY SINE Alu 3 298 -13 1856 182 0 0 chrY 14421248 14421545 -10291534 - AluSg SINE Alu -13 297 1 559 164 156 0 chrY 14421976 14422098 -10290981 + AluSc SINE Alu 144 284 -25 3180 216 67 36 chrY 14422115 14423108 -10289971 + L1P LINE L1 1267 2289 -3857 6867 64 0 0 chrY 14423114 14424472 -10288607 - L1PA4 LINE L1 0 6155 4799 33064 75 18 1 chrY 14424473 14429142 -10283937 - L1PA4 LINE L1 -1392 4754 7 245 253 0 10 chrY 14429143 14429242 -10283837 + (TA)n Simple_repeat Simple_repeat 1 98 0 232 267 35 0 chrY 14429277 14429363 -10283716 + L1MC4 LINE L1 6614 6702 -1340 233 257 18 37 chrY 14429404 14429513 -10283566 + L1MC4 LINE L1 6597 6703 -1339 189 107 0 0 chrY 14429519 14429547 -10283532 + (CATATA)n Simple_repeat Simple_repeat 2 29 0 10065 220 31 27 chrY 14429618 14433773 -10279306 + HERVK3 LTR ERVK 2914 7241 -2 2334 159 7 16 chrY 14433776 14434209 -10278870 + LTR3 LTR ERVK 1 429 0 820 217 0 53 chrY 14434209 14434398 -10278681 + AluSg/x SINE Alu 108 286 -24 241 45 23 23 chrY 14434403 14434447 -10278632 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 309 244 56 22 chrY 14434542 14434632 -10278447 + L1MC3 LINE L1 5296 5388 -2607 1451 201 7 13 chrY 14434985 14435327 -10277752 + AluSx SINE Alu 1 340 0 3539 39 28 0 chrY 14435455 14435916 -10277163 - L1P LINE L1 -1118 5028 4555 1276 243 67 49 chrY 14436042 14436610 -10276469 + L1MC3 LINE L1 5386 5963 -1822 314 212 61 0 chrY 14436873 14436972 -10276107 - L1MB3 LINE L1 -11 6172 6068 * 527 160 73 132 chrY 14436966 14437185 -10275894 - L1M4 LINE L1 -625 5559 5354 * 554 235 17 17 chrY 14437158 14437337 -10275742 + L1M4 LINE L1 5067 5245 -901 947 208 23 9 chrY 14437345 14437566 -10275513 + MER50 LTR ERV1 511 734 0 1938 231 45 16 chrY 14437737 14438343 -10274736 - L1MB5 LINE L1 -10 6164 5542 1309 259 155 14 chrY 14438385 14438934 -10274145 - L1M4c LINE L1 -4547 1837 1367 213 39 0 0 chrY 14438934 14438960 -10274119 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 1309 259 155 14 chrY 14438960 14439056 -10274023 - L1M4c LINE L1 -5017 1367 1286 1640 197 7 3 chrY 14439056 14439355 -10273724 - AluSc SINE Alu -9 300 1 1309 259 155 14 chrY 14439355 14439398 -10273681 - L1M4c LINE L1 -5098 1286 1051 459 150 43 0 chrY 14439398 14439538 -10273541 + (TA)n Simple_repeat Simple_repeat 1 146 0 234 136 0 0 chrY 14439567 14439611 -10273468 + (TAGA)n Simple_repeat Simple_repeat 2 45 0 243 0 0 0 chrY 14439612 14439639 -10273440 + (GA)n Simple_repeat Simple_repeat 2 28 0 312 302 55 64 chrY 14439654 14439889 -10273190 - L1M4c LINE L1 -5329 1055 823 396 0 0 0 chrY 14439889 14439933 -10273146 + (TTTC)n Simple_repeat Simple_repeat 2 45 0 1214 292 86 37 chrY 14439941 14439969 -10273110 - L1M4c LINE L1 -5509 875 850 2485 43 23 3 chrY 14439969 14440274 -10272805 - AluY SINE Alu 0 311 1 1214 292 86 37 chrY 14440274 14441033 -10272046 - L1M4c LINE L1 -5534 850 49 363 288 109 62 chrY 14441090 14441476 -10271603 - L1M4c LINE L1 -3890 2494 2091 368 353 59 5 chrY 14442635 14442822 -10270257 - L2 LINE L2 -352 2962 2766 808 209 59 14 chrY 14443873 14444093 -10268986 - MLT2A1 LTR ERVL -214 230 1 2025 169 32 0 chrY 14444093 14444500 -10268579 - HERVL-A1 LTR ERVL 0 5654 5235 815 157 0 6 chrY 14444515 14444681 -10268398 + CT-rich Low_complexity Low_complexity 2 166 0 801 122 0 0 chrY 14444672 14444819 -10268260 + (CTTG)n Simple_repeat Simple_repeat 2 148 0 * 17360 179 11 3 chrY 14444821 14449186 -10263893 - HERVL-A1 LTR ERVL -429 5225 714 2309 279 12 3 chrY 14449186 14449781 -10263298 + MER52A LTR ERV1 1156 1755 0 298 0 48 0 chrY 14450120 14450162 -10262917 + (TTTG)n Simple_repeat Simple_repeat 4 47 0 339 261 130 17 chrY 14450175 14450290 -10262789 - MER20 DNA MER1_type -67 152 25 1692 138 20 61 chrY 14450360 14450680 -10262399 + AluSq SINE Alu 1 308 0 258 164 30 60 chrY 14450741 14450808 -10262271 + L1PA10 LINE L1 6103 6167 -1 1121 251 94 4 chrY 14450970 14451237 -10261842 - AluSx SINE Alu -11 301 11 23 0 0 0 chrY 14452093 14452116 -10260963 + AT_rich Low_complexity Low_complexity 1 23 0 2192 89 3 3 chrY 14452492 14452795 -10260284 + AluY SINE Alu 1 303 -8 28 0 0 0 chrY 14453072 14453100 -10259979 + AT_rich Low_complexity Low_complexity 1 28 0 390 91 0 0 chrY 14453274 14453329 -10259750 + (TTC)n Simple_repeat Simple_repeat 3 57 0 26 30 0 0 chrY 14454305 14454338 -10258741 + AT_rich Low_complexity Low_complexity 1 33 0 26 30 0 0 chrY 14454569 14454602 -10258477 + AT_rich Low_complexity Low_complexity 1 33 0 554 189 0 0 chrY 14456727 14456822 -10256257 + AluJb SINE Alu 87 181 -131 663 165 13 6 chrY 14457051 14457209 -10255870 + (TA)n Simple_repeat Simple_repeat 1 159 0 671 313 104 20 chrY 14457222 14457471 -10255608 + AluJb SINE Alu 2 271 -41 243 111 0 0 chrY 14458160 14458196 -10254883 - Charlie3 DNA MER1_type -16 2694 2659 219 36 0 0 chrY 14458213 14458241 -10254838 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 1988 122 3 34 chrY 14459136 14459456 -10253623 - AluY SINE Alu -1 310 1 950 231 0 13 chrY 14459486 14459711 -10253368 + AluSq SINE Alu 81 302 -11 586 0 27 0 chrY 14459724 14459798 -10253281 + (GA)n Simple_repeat Simple_repeat 1 76 0 22 0 0 0 chrY 14460355 14460377 -10252702 + AT_rich Low_complexity Low_complexity 1 22 0 822 274 17 47 chrY 14461083 14461207 -10251872 + AluJo SINE Alu 6 132 -180 315 0 0 0 chrY 14461207 14461242 -10251837 + (TCTA)n Simple_repeat Simple_repeat 4 38 0 822 274 17 47 chrY 14461242 14461416 -10251663 + AluJo SINE Alu 132 295 -17 1068 216 120 30 chrY 14461649 14461983 -10251096 - THE1B LTR MaLR 0 364 1 3000 200 2 2 chrY 14461983 14462539 -10250540 - THE1B-int LTR MaLR 0 1580 1025 222 37 0 0 chrY 14462737 14462764 -10250315 + (A)n Simple_repeat Simple_repeat 1 27 0 279 0 0 0 chrY 14463680 14463711 -10249368 + (TA)n Simple_repeat Simple_repeat 1 31 0 1107 239 98 11 chrY 14465018 14465294 -10247785 + AluSx SINE Alu 1 300 -2 185 0 0 39 chrY 14465443 14465469 -10247610 + (TTTAA)n Simple_repeat Simple_repeat 1 25 0 686 207 0 0 chrY 14465470 14465605 -10247474 - L1PA10 LINE L1 -12 6156 6022 1013 210 23 37 chrY 14465621 14465921 -10247158 - L1PA10 LINE L1 -390 5778 5483 180 0 0 0 chrY 14466002 14466022 -10247057 + (A)n Simple_repeat Simple_repeat 1 20 0 297 250 10 21 chrY 14466035 14466131 -10246948 + MER20 DNA MER1_type 101 195 -24 3069 276 43 1 chrY 14466426 14467233 -10245846 - MER52A LTR ERV1 0 1755 915 889 271 47 103 chrY 14467201 14467724 -10245355 - MER52A LTR ERV1 -164 1114 645 765 189 7 7 chrY 14467724 14467877 -10245202 + MLT2A1 LTR ERVL 1 153 -291 8981 193 26 5 chrY 14467878 14469663 -10243416 + HERVL-A1 LTR ERVL 1378 3200 -2454 826 188 0 0 chrY 14469661 14469815 -10243264 + HERVL-A1 LTR ERVL 4503 4656 -998 * 2112 172 21 3 chrY 14469803 14470192 -10242887 + HERVL-A1 LTR ERVL 3201 3596 -2058 * 10513 156 6 20 chrY 14470186 14472058 -10241021 + HERVL-A1 LTR ERVL 3810 5654 0 1424 182 89 29 chrY 14472058 14472438 -10240641 + MLT2A1 LTR ERVL 1 403 -41 238 250 0 0 chrY 14472438 14472486 -10240593 + (CA)n Simple_repeat Simple_repeat 1 48 0 39219 62 2 15 chrY 14472539 14478772 -10234307 - L1PA4 LINE L1 -2 6153 3 34077 84 7 6 chrY 14478771 14483726 -10229353 - L1P LINE L1 -1141 5005 44 * 207 0 0 0 chrY 14483910 14483933 -10229146 + (A)n Simple_repeat Simple_repeat 1 23 0 180 152 0 0 chrY 14484208 14484241 -10228838 + (TAA)n Simple_repeat Simple_repeat 1 33 0 268 228 0 0 chrY 14485574 14485631 -10227448 - MER20 DNA MER1_type -73 146 90 345 350 70 11 chrY 14485677 14485863 -10227216 + L2 LINE L2 2766 2962 -352 1247 306 99 27 chrY 14487091 14487607 -10225472 + L1M4c LINE L1 23 614 -5770 321 26 0 0 chrY 14487607 14487645 -10225434 + (CA)n Simple_repeat Simple_repeat 1 38 0 1247 306 99 27 chrY 14487645 14487899 -10225180 + L1M4c LINE L1 614 848 -5536 22 0 0 0 chrY 14487966 14487988 -10225091 + AT_rich Low_complexity Low_complexity 1 22 0 1141 272 110 21 chrY 14488094 14489259 -10223820 + L1M4c LINE L1 812 2180 -4204 1862 145 3 27 chrY 14489687 14490013 -10223066 + AluY SINE Alu 1 319 0 325 153 34 0 chrY 14491290 14491349 -10221730 + LTR25 LTR ERV1 481 541 -253 * 1187 265 42 0 chrY 14491345 14491703 -10221376 + LTR25 LTR ERV1 422 794 0 1137 224 67 70 chrY 14491869 14492502 -10220577 + L1M4c LINE L1 1214 1848 -4536 2119 88 0 11 chrY 14492502 14492785 -10220294 + AluY SINE Alu 1 280 -31 876 96 0 0 chrY 14492670 14492785 -10220294 + AluY SINE Alu 166 324 0 355 45 0 0 chrY 14492785 14492829 -10220250 + (CAAAA)n Simple_repeat Simple_repeat 1 165 0 1137 224 67 70 chrY 14492829 14493085 -10219994 + L1M4c LINE L1 1846 2196 -4188 550 267 8 0 chrY 14495967 14496098 -10216981 - MER21B LTR ERV1 -485 378 247 1260 360 6 0 chrY 14496107 14496582 -10216497 - MER52A LTR ERV1 0 1755 1278 1592 272 19 55 chrY 14496584 14497313 -10215766 - LTR25-int LTR ERV1 -4448 2548 1846 22 0 0 0 chrY 14497436 14497458 -10215621 + AT_rich Low_complexity Low_complexity 1 22 0 712 255 100 93 chrY 14497522 14498060 -10215019 + LTR25 LTR ERV1 253 794 0 1404 189 21 24 chrY 14498128 14498419 -10214660 + AluY SINE Alu 1 290 -21 5529 280 43 48 chrY 14498536 14501237 -10211842 + LTR25-int LTR ERV1 100 3052 -4226 2152 250 48 76 chrY 14501257 14501758 -10211321 - LTR25 LTR ERV1 0 794 323 183 42 0 0 chrY 14501758 14501782 -10211297 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2152 250 48 76 chrY 14501782 14502095 -10210984 - LTR25 LTR ERV1 -471 323 3 5083 255 40 26 chrY 14502097 14504763 -10208316 - LTR25-int LTR ERV1 0 6996 1750 3800 252 36 28 chrY 14504776 14505046 -10208033 - LTR25-int LTR ERV1 -2664 4332 4066 1643 189 34 3 chrY 14505046 14505343 -10207736 + AluSc SINE Alu 2 307 -2 3800 252 36 28 chrY 14505343 14506486 -10206593 - LTR25-int LTR ERV1 -2930 4066 2907 507 257 9 84 chrY 14506574 14506788 -10206291 - LTR25 LTR ERV1 0 794 597 7676 11 0 0 chrY 14506818 14507922 -10205157 - L1HS LINE L1 0 6155 5052 2349 14 0 0 chrY 14507917 14508197 -10204882 + L1P LINE L1 4724 5003 -1143 * 1931 223 18 115 chrY 14508197 14508874 -10204205 - LTR25 LTR ERV1 -183 611 1 4902 290 52 42 chrY 14508874 14508941 -10204138 - LTR25-int LTR ERV1 -4221 2775 2710 279 0 0 0 chrY 14508941 14508972 -10204107 + (TTG)n Simple_repeat Simple_repeat 2 32 0 4902 290 52 42 chrY 14508972 14511870 -10201209 - LTR25-int LTR ERV1 -4286 2710 274 2395 234 29 94 chrY 14512017 14512866 -10200213 - LTR25 LTR ERV1 0 794 1 2983 291 8 17 chrY 14512867 14513801 -10199278 + LTR25-int LTR ERV1 2690 3614 -5305 263 238 38 12 chrY 14513806 14513886 -10199193 + LTR25-int LTR ERV1 4196 4277 -738 3398 192 26 44 chrY 14513886 14514886 -10198193 - MER11C LTR ERVK 0 1071 1 1648 279 24 10 chrY 14514891 14515468 -10197611 + LTR25-int LTR ERV1 3409 3993 -1224 629 304 37 18 chrY 14515471 14515732 -10197347 + LTR25-int LTR ERV1 4918 8895 -24 322 222 0 0 chrY 14515857 14515929 -10197150 + LTR25 LTR ERV1 222 293 -501 1076 276 92 12 chrY 14515956 14516459 -10196620 + LTR25 LTR ERV1 250 792 -2 2810 319 41 25 chrY 14516477 14517450 -10195629 - HUERS-P3 LTR ERV1 -5866 3053 2050 2581 7 0 0 chrY 14517450 14517763 -10195316 + AluY SINE Alu 1 313 0 2810 319 41 25 chrY 14517763 14518116 -10194963 - HUERS-P3 LTR ERV1 -6869 2050 1704 327 255 61 122 chrY 14518341 14518439 -10194640 + LTR25 LTR ERV1 270 372 -422 1250 50 6 16 chrY 14518439 14518621 -10194458 + (TTC)n Simple_repeat Simple_repeat 1 180 0 327 255 61 122 chrY 14518621 14518833 -10194246 + LTR25 LTR ERV1 372 634 -160 1162 321 33 29 chrY 14519284 14519916 -10193163 + LTR25-int LTR ERV1 1699 2333 -6586 1266 237 22 22 chrY 14520019 14520382 -10192697 + LTR25-int LTR ERV1 69 431 -6565 5136 158 6 2 chrY 14620382 14621360 -10091719 - L1P3 LINE L1 -2597 3864 2883 4253 176 38 21 chrY 14621349 14622189 -10090890 - L1P3 LINE L1 -5338 1123 270 * 1071 204 0 0 chrY 14622197 14622398 -10090681 - L1P3 LINE L1 -6256 205 5 22 0 0 0 chrY 14622409 14622431 -10090648 + AT_rich Low_complexity Low_complexity 1 22 0 615 245 102 23 chrY 14622452 14622971 -10090108 + L1MC/D LINE L1 5017 5562 -748 927 193 0 100 chrY 14623590 14623829 -10089250 + AluSc SINE Alu 1 215 -94 1223 232 0 48 chrY 14624316 14624444 -10088635 + AluSx SINE Alu 1 134 -178 1367 211 19 19 chrY 14624444 14624756 -10088323 + AluSx SINE Alu 1 312 0 1223 232 0 48 chrY 14624756 14624937 -10088142 + AluSx SINE Alu 134 295 -17 280 286 135 15 chrY 14625260 14625393 -10087686 - MIR SINE MIR -60 202 54 28 0 0 0 chrY 14626352 14626380 -10086699 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chrY 14626587 14626611 -10086468 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chrY 14626639 14626668 -10086411 + AT_rich Low_complexity Low_complexity 1 29 0 280 125 0 0 chrY 14628938 14628986 -10084093 + FLAM_A SINE Alu 82 129 -4 232 335 177 6 chrY 14629593 14629757 -10083322 + L3 LINE CR1 191 382 -1195 1763 176 3 19 chrY 14630259 14630566 -10082513 + AluSg SINE Alu 1 302 -8 1670 192 3 7 chrY 14630686 14630983 -10082096 + AluSq SINE Alu 1 296 -17 1198 279 25 0 chrY 14631146 14631429 -10081650 - AluJb SINE Alu -12 290 1 412 326 96 57 chrY 14631657 14631958 -10081121 - L2 LINE L2 -19 3253 2941 216 0 0 0 chrY 14634064 14634088 -10078991 + (A)n Simple_repeat Simple_repeat 1 24 0 593 221 48 28 chrY 14634238 14634260 -10078819 - AluJo SINE Alu -162 150 130 288 53 0 0 chrY 14634260 14634298 -10078781 + (TTA)n Simple_repeat Simple_repeat 2 39 0 593 221 48 28 chrY 14634298 14634420 -10078659 - AluJo SINE Alu -182 130 3 249 139 0 0 chrY 14634579 14634622 -10078457 + (TTCC)n Simple_repeat Simple_repeat 2 44 0 192 77 0 0 chrY 14634701 14634727 -10078352 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 353 272 24 0 chrY 14636251 14636376 -10076703 + FLAM_C SINE Alu 6 133 0 356 331 76 0 chrY 14636384 14636541 -10076538 + FAM SINE Alu 1 169 -6 1727 175 18 7 chrY 14636640 14636925 -10076154 + AluSx SINE Alu 3 290 -22 1073 209 14 0 chrY 14637017 14637232 -10075847 + L1MC1 LINE L1 6108 6325 -8 723 196 0 0 chrY 14638047 14638205 -10074874 + GA-rich Low_complexity Low_complexity 4 161 0 842 232 48 0 chrY 14640340 14640547 -10072532 - MER20 DNA MER1_type 0 219 3 207 0 0 0 chrY 14640874 14640897 -10072182 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 10832 71 1 6 chrY 14641319 14642812 -10070267 + L1PA4 LINE L1 14 1498 -4648 9647 52 0 8 chrY 14642831 14644849 -10068230 + L1PA4 LINE L1 4128 6155 0 1379 263 54 23 chrY 14644877 14645318 -10067761 - MLT1D LTR MaLR -23 482 28 242 146 49 0 chrY 14645653 14645694 -10067385 + Alu SINE Alu 1 43 -260 1177 205 31 0 chrY 14645719 14645943 -10067136 + AluSx SINE Alu 16 246 -66 460 222 234 23 chrY 14645965 14646136 -10066943 - MER3 DNA MER1_type 0 209 3 189 107 36 18 chrY 14646544 14646600 -10066479 + (CA)n Simple_repeat Simple_repeat 2 58 0 365 289 78 0 chrY 14646866 14647008 -10066071 - MER58B DNA MER1_type 0 341 189 228 281 0 31 chrY 14647035 14647099 -10065980 - L2 LINE L2 -1 3312 3251 207 314 76 9 chrY 14647131 14647236 -10065843 - MIR SINE MIR -133 129 18 319 54 0 36 chrY 14647396 14647452 -10065627 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 737 190 14 114 chrY 14647494 14647705 -10065374 - AluJb SINE Alu -119 193 4 663 267 58 24 chrY 14649873 14650297 -10062782 - MLT1C LTR MaLR -7 460 2 1575 196 3 7 chrY 14651682 14651988 -10061091 - AluSx SINE Alu 0 312 8 344 267 13 0 chrY 14652578 14652653 -10060426 + AluS SINE Alu 3 78 -225 353 322 54 50 chrY 14656281 14656579 -10056500 - MER46C DNA MER2_type -39 299 1 1225 168 10 0 chrY 14657490 14657692 -10055387 - AluSg/x SINE Alu -29 280 77 474 267 6 56 chrY 14659166 14659327 -10053752 + FRAM SINE Alu 4 156 -20 960 170 0 0 chrY 14660001 14660166 -10052913 + U1 snRNA snRNA 1 165 0 25 0 0 0 chrY 14660850 14660875 -10052204 + AT_rich Low_complexity Low_complexity 1 25 0 946 106 17 22 chrY 14661319 14661498 -10051581 + (TTCC)n Simple_repeat Simple_repeat 3 180 0 1348 209 46 7 chrY 14661501 14661784 -10051295 - AluSp SINE Alu -9 294 1 26 30 0 0 chrY 14662043 14662076 -10051003 + AT_rich Low_complexity Low_complexity 1 33 0 1345 303 79 78 chrY 14662416 14663582 -10049497 - MER21-int LTR ERV1 -1011 3180 2014 1210 244 21 37 chrY 14663827 14664262 -10048817 - L1MA4 LINE L1 -11 6289 5862 180 276 17 52 chrY 14664857 14664915 -10048164 + MIR SINE MIR 89 144 -64 27 0 0 0 chrY 14665698 14665725 -10047354 + AT_rich Low_complexity Low_complexity 1 27 0 207 130 70 9 chrY 14666251 14666366 -10046713 + (TA)n Simple_repeat Simple_repeat 1 122 0 331 98 98 6 chrY 14666378 14666542 -10046537 + (TA)n Simple_repeat Simple_repeat 2 180 0 386 137 46 30 chrY 14666546 14666677 -10046402 + (TATAA)n Simple_repeat Simple_repeat 1 133 0 291 106 99 0 chrY 14666681 14666832 -10046247 + (TA)n Simple_repeat Simple_repeat 2 167 0 2530 58 3 0 chrY 14667864 14668174 -10044905 + AluY SINE Alu 1 311 0 845 183 33 70 chrY 14668411 14668624 -10044455 + AluSg/x SINE Alu 69 273 -37 634 267 17 0 chrY 14668971 14669147 -10043932 + L1MB7 LINE L1 5985 6163 -21 847 296 98 22 chrY 14669180 14669639 -10043440 - L2 LINE L2 -658 2656 2163 1098 246 52 7 chrY 14669689 14669978 -10043101 + AluJo SINE Alu 1 302 0 36 0 0 0 chrY 14669990 14670026 -10043053 + AT_rich Low_complexity Low_complexity 1 36 0 22 35 0 0 chrY 14672679 14672708 -10040371 + AT_rich Low_complexity Low_complexity 1 29 0 1610 171 0 0 chrY 14673129 14673393 -10039686 - AluSg SINE Alu -45 265 2 1196 202 14 0 chrY 14673458 14673681 -10039398 + AluSx SINE Alu 1 226 -86 216 0 0 0 chrY 14673718 14673742 -10039337 + (TG)n Simple_repeat Simple_repeat 2 25 0 204 40 0 0 chrY 14673755 14673780 -10039299 + (CA)n Simple_repeat Simple_repeat 1 25 0 647 243 20 48 chrY 14673825 14674179 -10038900 - L1 LINE L1 -825 6740 6397 437 359 0 0 chrY 14674179 14674324 -10038755 - FRAM SINE Alu -31 145 1 4697 223 63 46 chrY 14674324 14675856 -10037223 - L1 LINE L1 -1140 6425 4867 1334 270 113 7 chrY 14675916 14676517 -10036562 - L1 LINE L1 -3007 4558 3894 741 284 76 29 chrY 14676554 14676767 -10036312 - L1 LINE L1 -4521 2975 2773 1318 211 3 61 chrY 14676767 14677079 -10036000 - AluSq SINE Alu -19 294 1 741 284 76 29 chrY 14677079 14677618 -10035461 - L1 LINE L1 -4723 2773 1967 526 292 168 0 chrY 14678006 14678191 -10034888 - AluSp SINE Alu -97 216 1 243 375 23 8 chrY 14678681 14678809 -10034270 + L2 LINE L2 2464 2593 -721 295 206 0 65 chrY 14680399 14680491 -10032588 - L1 LINE L1 -964 5182 5097 1662 183 33 19 chrY 14680516 14680882 -10032197 + L1MA7 LINE L1 5596 5966 -325 567 267 7 7 chrY 14680883 14681029 -10032050 + FRAM SINE Alu 1 146 -30 963 199 40 87 chrY 14681035 14681223 -10031856 + L1MA7 LINE L1 5944 6109 -182 1585 196 0 0 chrY 14681223 14681508 -10031571 + AluSq SINE Alu 4 288 -25 963 199 40 87 chrY 14681508 14681683 -10031396 + L1MA7 LINE L1 6109 6291 0 1172 209 17 17 chrY 14682166 14682405 -10030674 - AluSx SINE Alu -69 243 5 200 356 174 9 chrY 14682461 14682795 -10030284 + L2 LINE L2 1735 2123 -1191 222 236 0 0 chrY 14682820 14682875 -10030204 + CT-rich Low_complexity Low_complexity 4 58 0 497 281 118 0 chrY 14682876 14683029 -10030050 - FAM SINE Alu -4 171 1 22 0 0 0 chrY 14683694 14683716 -10029363 + AT_rich Low_complexity Low_complexity 1 22 0 29 104 0 0 chrY 14683938 14684044 -10029035 + AT_rich Low_complexity Low_complexity 1 106 0 1872 157 0 0 chrY 14684652 14684938 -10028141 + AluSx SINE Alu 3 288 -24 454 323 131 34 chrY 14685049 14685523 -10027556 + L1M4 LINE L1 84 603 -5939 429 252 9 9 chrY 14685559 14685674 -10027405 - AluJb SINE Alu -30 282 168 694 256 54 10 chrY 14685675 14685878 -10027201 - AluJb SINE Alu -98 214 3 229 51 51 0 chrY 14686022 14686061 -10027018 + T-rich Low_complexity Low_complexity 5 45 0 1558 269 96 50 chrY 14686089 14687324 -10025755 + L1M4 LINE L1 858 2158 -4488 857 242 131 11 chrY 14687337 14687597 -10025482 + AluJo SINE Alu 10 300 -12 428 302 81 16 chrY 14687658 14688039 -10025040 + L1M4 LINE L1 2290 2695 -3951 874 285 42 47 chrY 14688128 14688531 -10024548 + L1M4 LINE L1 2914 3314 -3330 186 171 0 0 chrY 14688537 14688578 -10024501 + T-rich Low_complexity Low_complexity 1 41 0 1430 198 34 0 chrY 14688601 14688869 -10024210 - AluSx SINE Alu -35 277 1 266 261 97 15 chrY 14688903 14689037 -10024042 + L1M4 LINE L1 3351 3495 -3149 3785 258 31 43 chrY 14689211 14690338 -10022741 + L1MB1 LINE L1 56 1170 -4357 1624 206 0 3 chrY 14690338 14690670 -10022409 + AluSx SINE Alu 4 312 0 3785 258 31 43 chrY 14690670 14690960 -10022119 + L1MB1 LINE L1 1170 1462 -4065 261 0 0 0 chrY 14692866 14692895 -10020184 + (A)n Simple_repeat Simple_repeat 1 29 0 310 234 56 9 chrY 14692895 14693002 -10020077 + L1MB1 LINE L1 1450 1561 -4767 2391 275 37 33 chrY 14693006 14694055 -10019024 + L1MB1 LINE L1 1963 3038 -3290 2173 106 0 0 chrY 14694055 14694347 -10018732 - AluY SINE Alu -14 297 6 2391 275 37 33 chrY 14694347 14694695 -10018384 + L1MB1 LINE L1 3038 3383 -2945 * 2769 243 91 18 chrY 14694671 14695723 -10017356 + L1MB1 LINE L1 4330 5561 -810 3915 114 12 2 chrY 14695723 14696304 -10016775 + LTR14C LTR ERVK 1 587 0 2769 243 91 18 chrY 14696304 14696897 -10016182 + L1MB1 LINE L1 5561 6109 -262 812 248 33 5 chrY 14696901 14697111 -10015968 - MSTB1 LTR MaLR -216 216 1 24 0 0 0 chrY 14697223 14697247 -10015832 + AT_rich Low_complexity Low_complexity 1 24 0 30102 135 13 16 chrY 14697248 14703412 -10009667 - L1PA6 LINE L1 -10 6144 11 416 115 0 0 chrY 14703451 14703512 -10009567 - Alu SINE Alu -15 295 235 4503 86 0 0 chrY 14703758 14704343 -10008736 - LTR14C LTR ERVK 0 587 3 293 291 153 41 chrY 14705217 14705413 -10007666 + MIR SINE MIR 44 261 -1 24 32 0 0 chrY 14706291 14706322 -10006757 + AT_rich Low_complexity Low_complexity 1 31 0 261 0 0 0 chrY 14707275 14707304 -10005775 + (T)n Simple_repeat Simple_repeat 1 29 0 514 269 56 53 chrY 14708162 14708556 -10004523 - L1ME2 LINE L1 -184 5980 5583 225 219 16 47 chrY 14709343 14709407 -10003672 + MER50 LTR ERV1 10 71 -663 237 226 0 0 chrY 14709438 14709500 -10003579 + L1MB3 LINE L1 5498 5559 -621 * 320 235 29 10 chrY 14709496 14709598 -10003481 + L1MB3 LINE L1 6070 6173 -10 465 165 0 12 chrY 14709685 14709770 -10003309 - AluY SINE Alu -18 293 210 1572 174 75 6 chrY 14709776 14710109 -10002970 - LTR22B LTR ERVK -136 356 1 15956 185 26 42 chrY 14710470 14712760 -10000319 + L1PA8 LINE L1 6 2331 -4130 1883 132 16 29 chrY 14712760 14713071 -10000008 + AluY SINE Alu 3 309 -2 15956 185 26 42 chrY 14713071 14714166 -9998913 + L1PA8 LINE L1 2331 3442 -3019 1216 240 6 41 chrY 14714166 14714483 -9998596 + AluSx SINE Alu 1 306 -6 15956 185 26 42 chrY 14714483 14716015 -9997064 + L1PA8 LINE L1 3442 4879 -1582 5246 138 33 5 chrY 14716018 14717315 -9995764 + L1PA8 LINE L1 5141 6480 -7 321 251 107 2 chrY 14717833 14718008 -9995071 - L1ME2 LINE L1 -765 5381 5188 1093 253 0 4 chrY 14718024 14718281 -9994798 - AluSx SINE Alu -21 291 36 291 272 88 22 chrY 14718472 14718744 -9994335 - L1ME2 LINE L1 -1187 4959 4670 270 0 0 0 chrY 14718839 14718869 -9994210 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 989 207 103 16 chrY 14718881 14719123 -9993956 - AluJb SINE Alu -47 265 3 392 284 51 47 chrY 14719125 14719340 -9993739 - L1ME2 LINE L1 -1635 4511 4296 2161 175 34 79 chrY 14720397 14721014 -9992065 - MER4B LTR ERV1 -25 754 1 21 36 0 0 chrY 14721046 14721074 -9992005 + AT_rich Low_complexity Low_complexity 1 28 0 1023 231 97 7 chrY 14721403 14721672 -9991407 - AluJb SINE Alu -1 311 19 22 0 0 0 chrY 14721981 14722003 -9991076 + AT_rich Low_complexity Low_complexity 1 22 0 597 295 73 23 chrY 14722588 14723107 -9989972 - L1M4 LINE L1 -1747 4635 4091 308 200 32 8 chrY 14723496 14723621 -9989458 + (TTAGGG)n Simple_repeat Simple_repeat 3 130 0 198 227 5 38 chrY 14723647 14723832 -9989247 + (TTAGGG)n Simple_repeat Simple_repeat 2 180 0 182 192 20 20 chrY 14723947 14724046 -9989033 + (TTAGGG)n Simple_repeat Simple_repeat 4 102 0 214 193 12 24 chrY 14724134 14724217 -9988862 + (TTAGGG)n Simple_repeat Simple_repeat 6 87 0 349 207 16 36 chrY 14724326 14724642 -9988437 + (TTAGGG)n Simple_repeat Simple_repeat 1 309 0 406 362 53 4 chrY 14724652 14724730 -9988349 + MER52A LTR ERV1 820 893 -862 386 68 0 17 chrY 14724730 14724789 -9988290 + (TTTA)n Simple_repeat Simple_repeat 2 59 0 1517 208 11 0 chrY 14724792 14725071 -9988008 - AluSp SINE Alu -30 283 2 406 362 53 4 chrY 14725071 14725253 -9987826 + MER52A LTR ERV1 894 1097 -658 * 1661 326 45 18 chrY 14725220 14725886 -9987193 + MER52A LTR ERV1 923 1606 -149 1400 259 96 9 chrY 14727870 14728812 -9984267 - L1M4 LINE L1 -4173 2211 1088 1658 171 4 0 chrY 14728812 14729092 -9983987 - AluSc SINE Alu 0 301 21 189 0 0 0 chrY 14729104 14729125 -9983954 + (TG)n Simple_repeat Simple_repeat 2 22 0 839 126 8 0 chrY 14729125 14729244 -9983835 - AluY SINE Alu -191 120 1 430 282 145 55 chrY 14729390 14729865 -9983214 - L1M4c LINE L1 -3884 2500 1983 21 36 0 0 chrY 14730088 14730116 -9982963 + AT_rich Low_complexity Low_complexity 1 28 0 317 323 60 65 chrY 14730928 14731129 -9981950 - L2 LINE L2 -352 2962 2763 1871 105 101 21 chrY 14731460 14731746 -9981333 + AluY SINE Alu 1 309 -2 397 203 0 0 chrY 14732139 14732218 -9980861 - HERVL LTR ERVL -4866 788 710 2064 284 19 12 chrY 14732219 14732810 -9980269 + MER52A LTR ERV1 1161 1755 0 437 272 208 0 chrY 14733004 14733129 -9979950 - AluSq SINE Alu -26 287 137 1752 192 0 7 chrY 14733439 14733565 -9979514 + AluSq SINE Alu 1 126 -187 225 0 0 0 chrY 14733565 14733590 -9979489 + (CA)n Simple_repeat Simple_repeat 2 26 0 1752 192 0 7 chrY 14733590 14733755 -9979324 + AluSq SINE Alu 126 290 -23 35 24 0 0 chrY 14733897 14733939 -9979140 + AT_rich Low_complexity Low_complexity 1 42 0 1162 249 90 4 chrY 14734086 14734363 -9978716 - AluSx SINE Alu -11 301 1 40314 58 2 1 chrY 14734663 14740812 -9972267 - L1PA3 LINE L1 0 6155 2 22 0 0 0 chrY 14743211 14743233 -9969846 + AT_rich Low_complexity Low_complexity 1 22 0 2057 124 27 10 chrY 14743488 14743786 -9969293 - AluY SINE Alu -8 303 1 1040 171 11 6 chrY 14743947 14744334 -9968745 + ALR/Alpha Satellite centromeric 1 385 -5892 207 0 0 0 chrY 14744334 14744357 -9968722 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1040 171 11 6 chrY 14744357 14750181 -9962898 + ALR/Alpha Satellite centromeric 385 6264 -13 972 166 15 5 chrY 14750195 14752962 -9960117 + ALR/Alpha Satellite centromeric 1 2796 0 34466 72 5 86 chrY 14752967 14757419 -9955660 + L1PA4 LINE L1 9 3819 -2336 1657 25 0 0 chrY 14757419 14757615 -9955464 + L1PA2 LINE L1 5958 6155 0 34466 72 5 86 chrY 14757615 14759300 -9953779 + L1PA4 LINE L1 3819 5639 -516 2158 66 0 0 chrY 14759300 14759595 -9953484 + L1PA4 LINE L1 5867 6162 0 934 185 8 6 chrY 14759628 14760979 -9952100 + ALR/Alpha Satellite centromeric 1 1353 0 5778 148 23 33 chrY 14760993 14762071 -9951008 - MER11C LTR ERVK -4 1067 1 6672 102 7 0 chrY 14762071 14763048 -9950031 - HERVK11 LTR ERVK 0 7953 6970 180 190 69 52 chrY 14763048 14763106 -9949973 - L2 LINE L2 -64 3208 3150 7442 100 6 0 chrY 14763106 14764230 -9948849 - HERVK11 LTR ERVK -1246 6707 5525 2798 125 0 0 chrY 14764228 14764651 -9948428 - HERVK11 LTR ERVK -3352 4601 4179 * 1123 168 9 7 chrY 14764651 14774576 -9938503 + ALR/Alpha Satellite centromeric 1 9946 0 1047 156 6 0 chrY 14774587 14775683 -9937396 + ALR/Alpha Satellite centromeric 1 1102 0 980 161 9 6 chrY 14775702 14775869 -9937210 + ALR/Alpha Satellite centromeric 1 166 -1521 1994 145 0 7 chrY 14775869 14776179 -9936900 + AluY SINE Alu 1 308 -3 980 161 9 6 chrY 14776179 14777378 -9935701 + ALR/Alpha Satellite centromeric 166 1679 -8 3964 123 19 0 chrY 14777378 14777954 -9935125 + LTR14C LTR ERVK 1 587 0 5293 134 17 4 chrY 14777954 14779343 -9933736 + HERVK14C LTR ERVK 1 1489 -5928 965 177 4 1 chrY 14779343 14780447 -9932632 + ALR/Alpha Satellite centromeric 1 1108 0 26010 122 38 11 chrY 14780448 14784849 -9928230 + L1P LINE L1 1 4524 -1622 921 162 30 1 chrY 14784849 14785597 -9927482 + ALR/Alpha Satellite centromeric 1 770 -32 1021 124 0 0 chrY 14785597 14785742 -9927337 + AluY SINE Alu 166 310 -1 1057 185 12 7 chrY 14785744 14787592 -9925487 + ALR/Alpha Satellite centromeric 1 1839 -6957 1506 188 7 0 chrY 14787592 14787869 -9925210 + AluSg SINE Alu 12 290 -20 1057 185 12 7 chrY 14787869 14794497 -9918582 + ALR/Alpha Satellite centromeric 1839 8795 -1 1008 184 8 23 chrY 14794508 14794944 -9918135 + ALR/Alpha Satellite centromeric 1 442 -2008 1914 148 0 7 chrY 14794944 14795235 -9917844 + AluY SINE Alu 15 303 -8 1008 184 8 23 chrY 14795235 14795666 -9917413 + ALR/Alpha Satellite centromeric 442 878 -1572 1501 197 39 11 chrY 14795666 14795950 -9917129 + AluSp SINE Alu 1 292 -21 1008 184 8 23 chrY 14795950 14796981 -9916098 + ALR/Alpha Satellite centromeric 878 2435 -15 2996 203 9 19 chrY 14796981 14797660 -9915419 - L1P LINE L1 -4369 1777 1106 1785 186 0 7 chrY 14797665 14797966 -9915113 - AluSg SINE Alu -11 299 1 527 219 16 8 chrY 14798651 14798779 -9914300 + AluJb SINE Alu 13 141 -171 32 26 0 0 chrY 14798796 14798835 -9914244 + AT_rich Low_complexity Low_complexity 1 39 0 884 232 130 8 chrY 14798913 14799167 -9913912 - AluJo SINE Alu -17 285 1 259 282 36 27 chrY 14799490 14799600 -9913479 + LTR54B LTR ERV1 36 146 -352 237 269 0 0 chrY 14799668 14799735 -9913344 + LTR54 LTR ERV1 407 473 -37 1780 126 82 4 chrY 14799746 14800015 -9913064 + AluSg SINE Alu 12 301 -9 508 200 11 0 chrY 14801369 14801544 -9911535 + GA-rich Low_complexity Low_complexity 2 178 0 552 195 0 0 chrY 14801572 14801726 -9911353 + GA-rich Low_complexity Low_complexity 2 155 0 24 0 0 0 chrY 14802222 14802246 -9910833 + AT_rich Low_complexity Low_complexity 1 24 0 1719 148 7 0 chrY 14803649 14803920 -9909159 - AluSp SINE Alu -36 277 5 687 219 0 7 chrY 14804136 14804273 -9908806 - MER39B LTR ERV1 -242 411 276 521 274 21 21 chrY 14804275 14804465 -9908614 + MER39B LTR ERV1 462 651 -2 1661 146 36 7 chrY 14804781 14805055 -9908024 + AluSx SINE Alu 10 291 -21 884 264 7 29 chrY 14805251 14805531 -9907548 - L1PA15 LINE L1 -1 6164 5891 741 160 6 13 chrY 14806000 14806156 -9906923 + GA-rich Low_complexity Low_complexity 2 156 0 896 216 106 38 chrY 14806194 14806458 -9906621 + AluJo SINE Alu 1 282 -30 392 132 5 0 chrY 14806535 14806605 -9906474 + AluJ/FLAM SINE Alu 5 62 -240 1587 129 3 99 chrY 14806774 14807106 -9905973 + AluSg SINE Alu 11 310 0 1198 182 0 22 chrY 14807117 14807348 -9905731 + AluSg SINE Alu 83 308 -4 1644 175 49 0 chrY 14807353 14807638 -9905441 + AluSg SINE Alu 1 299 -11 243 38 57 38 chrY 14807723 14807776 -9905303 + T-rich Low_complexity Low_complexity 2 55 0 1322 178 5 0 chrY 14807778 14807992 -9905087 - AluSc SINE Alu -43 266 52 353 58 19 0 chrY 14807993 14808045 -9905034 + (TTTC)n Simple_repeat Simple_repeat 4 56 0 542 253 103 23 chrY 14808047 14808221 -9904858 - AluJb SINE Alu 0 312 125 868 155 292 23 chrY 14808241 14808460 -9904619 - AluSg1 SINE Alu -26 283 6 2059 130 10 0 chrY 14809408 14809701 -9903378 - AluY SINE Alu -13 298 3 864 271 44 60 chrY 14810574 14810940 -9902139 - MLT1B LTR MaLR -6 384 25 2163 125 0 6 chrY 14811427 14811740 -9901339 + AluY SINE Alu 1 311 0 1849 180 3 0 chrY 14812191 14812496 -9900583 + AluSp SINE Alu 1 306 -7 296 240 144 50 chrY 14812670 14813083 -9899996 + L1M3c LINE L1 915 1335 -4806 * 966 314 20 5 chrY 14813061 14813573 -9899506 + L1MB2 LINE L1 1132 2051 -4160 1846 157 0 10 chrY 14813784 14814077 -9899002 + AluSg SINE Alu 1 290 -20 243 0 0 0 chrY 14814131 14814158 -9898921 + (CA)n Simple_repeat Simple_repeat 2 28 0 701 292 39 64 chrY 14814236 14814534 -9898545 + L1MB2 LINE L1 2154 2458 -3752 2028 134 3 0 chrY 14814534 14814824 -9898255 + AluY SINE Alu 1 291 -20 701 292 39 64 chrY 14814824 14814933 -9898146 + L1MB2 LINE L1 2458 2568 -3642 255 79 0 0 chrY 14814933 14814971 -9898108 + (TAGA)n Simple_repeat Simple_repeat 4 41 0 701 292 39 64 chrY 14814971 14815375 -9897704 + L1MB2 LINE L1 2568 2945 -3265 712 253 34 37 chrY 14815384 14815681 -9897398 + L1MB2 LINE L1 4755 5050 -1332 1217 266 26 38 chrY 14815712 14816213 -9896866 + L1MB2 LINE L1 5910 6404 -3 1536 176 75 0 chrY 14816230 14816497 -9896582 + AluSx SINE Alu 5 291 -21 24 0 0 0 chrY 14816787 14816811 -9896268 + AT_rich Low_complexity Low_complexity 1 24 0 2315 105 3 9 chrY 14817296 14817611 -9895468 - AluSp SINE Alu 0 313 1 34 0 0 0 chrY 14817836 14817870 -9895209 + AT_rich Low_complexity Low_complexity 1 34 0 1825 154 0 30 chrY 14817909 14818208 -9894871 - AluSg SINE Alu -20 290 1 786 224 78 15 chrY 14818682 14818887 -9894192 + L1MB7 LINE L1 5905 6122 -62 561 183 32 24 chrY 14818887 14819013 -9894066 - FLAM_C SINE Alu -6 137 11 369 200 95 0 chrY 14819081 14819176 -9893903 + L1MC4a LINE L1 5812 5915 -1893 1970 119 0 61 chrY 14819820 14820178 -9892901 - AluY SINE Alu 0 311 1 229 296 68 0 chrY 14820872 14820960 -9892119 - L2 LINE L2 -496 2818 2725 629 284 53 69 chrY 14821596 14821662 -9891417 + L1M4c LINE L1 804 870 -5433 1793 161 11 7 chrY 14821662 14821989 -9891090 - AluSx SINE Alu 0 328 1 629 284 53 69 chrY 14821989 14822629 -9890450 + L1M4c LINE L1 870 1662 -4641 424 289 15 37 chrY 14822601 14822874 -9890205 + L1M4c LINE L1 1590 1856 -4528 * 186 71 0 0 chrY 14824207 14824235 -9888844 + (TG)n Simple_repeat Simple_repeat 2 29 0 1820 164 4 4 chrY 14825308 14825649 -9887430 + AluSg SINE Alu 2 342 0 456 172 0 0 chrY 14830175 14830262 -9882817 + (CA)n Simple_repeat Simple_repeat 2 88 0 1387 228 0 4 chrY 14830262 14830538 -9882541 - AluJo SINE Alu -37 275 1 290 195 0 61 chrY 14830576 14830658 -9882421 + AluJ/FRAM SINE Alu 226 302 0 218 292 28 0 chrY 14831308 14831380 -9881699 + MIR SINE MIR 54 127 -81 5411 123 16 35 chrY 14831390 14831749 -9881330 + L1PA8 LINE L1 4679 5043 -1129 1584 172 3 56 chrY 14831749 14832051 -9881028 - AluSg SINE Alu -24 286 1 5411 123 16 35 chrY 14832051 14832417 -9880662 + L1PA8 LINE L1 5043 5414 -758 1598 163 58 14 chrY 14832417 14832712 -9880367 + AluSg SINE Alu 1 308 -2 5411 123 16 35 chrY 14832712 14833424 -9879655 + L1PA8 LINE L1 5414 6085 -87 252 114 0 0 chrY 14833425 14833460 -9879619 + Alu SINE Alu 5 39 -261 619 160 7 69 chrY 14833460 14833604 -9879475 + L1PA8A LINE L1 5997 6131 0 237 178 0 0 chrY 14833638 14833683 -9879396 + G-rich Low_complexity Low_complexity 2 46 0 304 247 25 0 chrY 14834518 14834599 -9878480 - HERV30 LTR ERV1 -1 6528 6446 422 244 92 23 chrY 14834799 14834973 -9878106 - HERV30 LTR ERV1 -261 7131 7001 346 296 91 56 chrY 14836471 14837041 -9876038 - HERV30 LTR ERV1 -1155 5499 5182 484 253 91 81 chrY 14837277 14837660 -9875419 - HERV30 LTR ERV1 -4378 2151 1765 283 283 34 45 chrY 14838414 14838598 -9874481 - HERV30 LTR ERV1 -6727 1530 676 1906 131 26 7 chrY 14839566 14839871 -9873208 + AluY SINE Alu 1 311 0 517 266 58 0 chrY 14839878 14840032 -9873047 - MER93a LTR ERV1 -20 382 220 2174 116 10 0 chrY 14840032 14840333 -9872746 + AluSp SINE Alu 1 304 -9 1043 291 47 19 chrY 14840374 14840845 -9872234 - L1M4 LINE L1 -1821 4325 3842 285 225 62 0 chrY 14840854 14840934 -9872145 - L1M4 LINE L1 -2551 3595 3511 893 211 12 50 chrY 14841612 14841698 -9871381 - L1MB4 LINE L1 -273 5907 5819 1285 243 3 26 chrY 14841698 14842003 -9871076 - AluJb SINE Alu -13 299 2 893 211 12 50 chrY 14842003 14842158 -9870921 - L1MB4 LINE L1 -361 5819 5675 1239 204 0 5 chrY 14842230 14842450 -9870629 + AluSx SINE Alu 7 225 -87 1195 208 72 74 chrY 14842517 14842990 -9870089 - L1MB4 LINE L1 -551 5629 5174 449 269 8 0 chrY 14843080 14843214 -9869865 - L1MB4 LINE L1 -990 5156 5022 6085 211 45 10 chrY 14843216 14843937 -9869142 - L1PA14 LINE L1 -4 6157 5462 2177 149 0 0 chrY 14843937 14844246 -9868833 - AluSc SINE Alu 0 309 1 6085 211 45 10 chrY 14844246 14844693 -9868386 - L1PA14 LINE L1 -699 5462 5032 425 19 19 0 chrY 14844693 14844747 -9868332 + (TTTA)n Simple_repeat Simple_repeat 3 57 0 6085 211 45 10 chrY 14844747 14845064 -9868015 - L1PA14 LINE L1 -1129 5032 4727 195 42 0 0 chrY 14845064 14845088 -9867991 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1914 135 15 0 chrY 14845094 14845368 -9867711 - AluY SINE Alu -33 278 1 6085 211 45 10 chrY 14845368 14846597 -9866482 - L1PA14 LINE L1 -1438 4723 3349 1314 276 42 31 chrY 14846638 14847354 -9865725 - L1MB4 LINE L1 -1115 5031 4308 1609 177 40 17 chrY 14847572 14847871 -9865208 + AluSx SINE Alu 6 311 -1 561 355 26 20 chrY 14848134 14848481 -9864598 + LTR40a LTR ERVL 68 416 -103 * 1201 171 7 96 chrY 14848478 14848770 -9864309 + MER4A LTR ERV1 399 664 0 1204 164 73 0 chrY 14849140 14849359 -9863720 - AluSg SINE Alu -75 235 1 892 286 30 8 chrY 14849987 14850221 -9862858 + MIR SINE MIR 23 261 -1 295 288 57 90 chrY 14850226 14850279 -9862800 + MIR SINE MIR 6 59 -203 1750 175 13 29 chrY 14850279 14850588 -9862491 + AluJb SINE Alu 2 305 -7 295 288 57 90 chrY 14850588 14850711 -9862368 + MIR SINE MIR 59 176 -86 1743 183 32 0 chrY 14850712 14850997 -9862082 + AluSx SINE Alu 1 294 -18 229 195 37 85 chrY 14851036 14851118 -9861961 + MIR SINE MIR 177 254 -8 557 282 167 0 chrY 14851140 14851304 -9861775 - MIR SINE MIR 0 262 52 2008 173 0 0 chrY 14851304 14851610 -9861469 - AluJo SINE Alu -1 311 6 557 282 167 0 chrY 14851610 14851661 -9861418 - MIR SINE MIR -210 52 11 7921 71 42 3 chrY 14851721 14852752 -9860327 - MER11C LTR ERVK 0 1071 1 225 297 174 47 chrY 14853968 14854204 -9858875 + L3 LINE CR1 587 852 -725 229 264 0 0 chrY 14854302 14854355 -9858724 + MIR SINE MIR 161 213 -49 805 145 33 17 chrY 14854358 14854696 -9858383 + (ATGGTG)n Simple_repeat Simple_repeat 1 343 0 890 107 23 23 chrY 14854747 14854924 -9858155 + (ATGGTG)n Simple_repeat Simple_repeat 1 177 0 258 245 0 0 chrY 14854960 14855009 -9858070 - MIR SINE MIR -211 51 3 1909 133 44 10 chrY 14855251 14855578 -9857501 + AluSq SINE Alu 1 313 0 782 179 7 14 chrY 14855621 14855761 -9857318 + AluJ SINE Alu 3 141 -171 290 276 71 10 chrY 14855843 14855941 -9857138 + L3 LINE CR1 1307 1410 -167 330 265 167 37 chrY 14856045 14856207 -9856872 + MER5A DNA MER1_type 7 189 0 8958 42 0 0 chrY 14856648 14858512 -9854567 - L1PA3 LINE L1 0 6155 4300 6774 50 0 0 chrY 14858537 14859395 -9853684 + L1P LINE L1 3422 4279 -1867 206 373 57 14 chrY 14860001 14860213 -9852866 + L2 LINE L2 1063 1283 -2031 987 198 5 27 chrY 14860424 14860646 -9852433 - AluJo SINE Alu 0 312 96 1214 205 33 43 chrY 14860784 14861087 -9851992 - AluJo SINE Alu -1 301 2 509 235 0 0 chrY 14861105 14861207 -9851872 + AluJ SINE Alu 132 233 -79 1735 163 7 17 chrY 14861306 14861637 -9851442 - AluSx SINE Alu 0 328 1 233 312 102 57 chrY 14861760 14861917 -9851162 - MIR3 SINE MIR -15 193 30 29 28 0 0 chrY 14862467 14862503 -9850576 + AT_rich Low_complexity Low_complexity 1 36 0 23 33 0 0 chrY 14862924 14862954 -9850125 + AT_rich Low_complexity Low_complexity 1 30 0 1128 171 16 16 chrY 14863796 14864047 -9849032 + L1M2 LINE L1 2536 2786 -4063 1514 138 23 0 chrY 14864059 14864277 -9848802 + AluSq SINE Alu 78 300 -13 1085 203 4 38 chrY 14864299 14864560 -9848519 + L1M2 LINE L1 3342 3593 -3255 195 162 0 0 chrY 14864574 14864611 -9848468 + T-rich Low_complexity Low_complexity 4 40 0 218 188 43 0 chrY 14864882 14864951 -9848128 + (TA)n Simple_repeat Simple_repeat 1 72 0 2020 141 0 0 chrY 14864951 14865228 -9847851 - AluSx SINE Alu -26 286 10 180 235 86 49 chrY 14865474 14865555 -9847524 - L2 LINE L2 -1477 1837 1754 1672 194 7 7 chrY 14865584 14865883 -9847196 + AluSx SINE Alu 1 299 -13 2203 109 0 53 chrY 14865883 14866203 -9846876 + AluY SINE Alu 1 303 -8 1871 166 0 3 chrY 14867064 14867387 -9845692 + AluSx SINE Alu 1 322 0 730 184 0 22 chrY 14867395 14867531 -9845548 + AluJo SINE Alu 1 133 -169 908 216 16 5 chrY 14867572 14867757 -9845322 + AluJo SINE Alu 118 304 -8 1916 168 3 0 chrY 14867757 14868055 -9845024 + AluSq SINE Alu 1 299 -14 1205 118 0 12 chrY 14868124 14868285 -9844794 + AluSx SINE Alu 2 160 -152 1598 108 5 5 chrY 14868306 14868520 -9844559 - AluSq SINE Alu -96 217 4 208 330 9 9 chrY 14869959 14870074 -9843005 + CT-rich Low_complexity Low_complexity 2 116 0 665 192 16 24 chrY 14870152 14870277 -9842802 + AluJb SINE Alu 164 287 -25 181 191 0 29 chrY 14870380 14870448 -9842631 + (TTA)n Simple_repeat Simple_repeat 1 66 0 514 227 0 0 chrY 14870456 14870544 -9842535 - FRAM SINE Alu -26 150 63 323 203 0 0 chrY 14870632 14870696 -9842383 + AluJ/FLAM SINE Alu 34 97 -205 840 255 60 17 chrY 14870696 14870822 -9842257 - AluJb SINE Alu -54 258 139 606 14 0 0 chrY 14870822 14870893 -9842186 + (TTTTA)n Simple_repeat Simple_repeat 3 73 0 840 255 60 17 chrY 14870893 14871001 -9842078 - AluJb SINE Alu -173 139 14 361 309 144 45 chrY 14871023 14871399 -9841680 - HAL1 LINE L1 -1204 1303 891 1492 172 82 0 chrY 14871818 14872085 -9840994 - AluSx SINE Alu -23 289 1 1485 203 30 0 chrY 14872351 14872622 -9840457 - AluSg SINE Alu -31 279 1 241 297 165 16 chrY 14872685 14872867 -9840212 - LTR54B LTR ERV1 -254 244 36 1165 184 137 23 chrY 14873197 14873453 -9839626 + AluJb SINE Alu 1 285 -17 23 68 0 0 chrY 14873527 14873571 -9839508 + AT_rich Low_complexity Low_complexity 1 44 0 802 171 7 7 chrY 14873588 14873728 -9839351 - AluJb SINE Alu -171 141 2 194 81 27 0 chrY 14873732 14873769 -9839310 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 2093 135 0 3 chrY 14874532 14874828 -9838251 + AluSg SINE Alu 2 296 -14 1691 168 3 66 chrY 14874830 14875124 -9837955 + AluSp SINE Alu 1 273 -40 258 32 0 0 chrY 14875124 14875155 -9837924 + (TAA)n Simple_repeat Simple_repeat 2 32 0 1691 168 3 66 chrY 14875155 14875193 -9837886 + AluSp SINE Alu 273 312 -1 403 175 0 0 chrY 14875256 14875319 -9837760 - AluS SINE Alu -255 63 1 23 0 0 0 chrY 14875343 14875366 -9837713 + AT_rich Low_complexity Low_complexity 1 23 0 1624 191 0 0 chrY 14875367 14875629 -9837450 - AluSx SINE Alu -16 296 35 3774 107 36 2 chrY 14875630 14876189 -9836890 + LTR14C LTR ERVK 10 587 0 273 125 0 0 chrY 14876189 14876229 -9836850 - AluSx SINE Alu -260 41 2 229 159 68 0 chrY 14876197 14876241 -9836838 - Alu SINE Alu -135 168 122 * 1066 204 132 4 chrY 14876261 14876526 -9836553 - ERVL LTR ERVL -2176 3588 3290 749 193 0 21 chrY 14876680 14876820 -9836259 - FRAM SINE Alu -23 153 17 327 190 0 0 chrY 14876880 14876938 -9836141 - Alu SINE Alu -2 299 242 1025 202 14 0 chrY 14876938 14877151 -9835928 - PABL_A LTR ERV1 0 660 445 1858 168 0 0 chrY 14877160 14877488 -9835591 - AluSx SINE Alu 0 330 3 391 335 85 52 chrY 14878527 14878845 -9834234 - HAL1 LINE L1 -1186 1321 986 2329 60 19 32 chrY 14878845 14879160 -9833919 - AluY SINE Alu 0 311 1 391 335 85 52 chrY 14879160 14879229 -9833850 - HAL1 LINE L1 -1521 986 921 220 214 0 24 chrY 14879235 14879319 -9833760 + CT-rich Low_complexity Low_complexity 2 83 0 338 115 0 115 chrY 14881574 14881652 -9831427 - AluSc SINE Alu -95 204 136 1047 197 43 3 chrY 14881889 14883129 -9829950 + GSATX Satellite centromeric 1 1288 -2 1015 178 35 32 chrY 14883144 14884107 -9828972 + GSATX Satellite centromeric 1 966 -21 1038 183 48 13 chrY 14884121 14885627 -9827452 + GSATX Satellite centromeric 1 1558 -5 1063 189 46 2 chrY 14885639 14886824 -9826255 + GSATX Satellite centromeric 1 1236 -5 1070 162 68 3 chrY 14886839 14888761 -9824318 - GSATX Satellite centromeric -21 2046 1 655 144 34 8 chrY 14889278 14889396 -9823683 - 5S rRNA rRNA 0 121 1 217 310 0 0 chrY 14890116 14890203 -9822876 + (CA)n Simple_repeat Simple_repeat 2 88 0 356 238 0 7 chrY 14890218 14890361 -9822718 + GA-rich Low_complexity Low_complexity 2 143 0 712 157 52 0 chrY 14891191 14891306 -9821773 - 5S rRNA rRNA 0 121 1 13450 205 36 41 chrY 14891696 14891790 -9821289 - L1M1 LINE L1 -4311 3254 3161 2386 93 0 0 chrY 14891790 14892100 -9820979 - AluY SINE Alu -1 310 1 13450 205 36 41 chrY 14892100 14895250 -9817829 - L1M1 LINE L1 -4404 3161 26 2401 183 76 9 chrY 14895268 14895810 -9817269 - LTR49-int LTR ERV1 -1975 5562 4985 29 0 0 0 chrY 14895846 14895875 -9817204 + AT_rich Low_complexity Low_complexity 1 29 0 1850 144 0 0 chrY 14896057 14896321 -9816758 + AluSx SINE Alu 18 281 -31 362 167 0 0 chrY 14896261 14896323 -9816756 + AluS SINE Alu 221 305 0 187 43 0 0 chrY 14896323 14896346 -9816733 + (TAA)n Simple_repeat Simple_repeat 2 180 0 392 205 69 100 chrY 14896408 14896726 -9816353 - LTR49-int LTR ERV1 -2970 1966 1712 353 205 0 39 chrY 14896825 14896903 -9816176 - LTR49-int LTR ERV1 -2885 3446 3372 373 234 0 11 chrY 14896981 14897075 -9816004 - LTR49-int LTR ERV1 -2991 3340 3248 1643 105 0 16 chrY 14897221 14897469 -9815610 - L1PA14 LINE L1 -6 6155 5912 227 97 0 0 chrY 14897471 14897502 -9815577 - L1PA14 LINE L1 -342 5812 5782 2311 147 7 30 chrY 14897502 14897715 -9815364 - LTR66 LTR ERVL 0 610 410 384 22 0 0 chrY 14897715 14897760 -9815319 + (CA)n Simple_repeat Simple_repeat 2 46 0 2311 147 7 30 chrY 14897760 14897976 -9815103 - LTR66 LTR ERVL -200 410 191 955 125 0 0 chrY 14897993 14898129 -9814950 + AluSx SINE Alu 18 153 -159 902 95 177 0 chrY 14898131 14898289 -9814790 - LTR66 LTR ERVL -422 188 3 2583 150 23 4 chrY 14898295 14898775 -9814304 - L1PA14 LINE L1 -376 5785 5297 * 4683 138 9 5 chrY 14898764 14899573 -9813506 - L1PB1 LINE L1 -1 6150 5339 2787 227 36 2 chrY 14899560 14900347 -9812732 + L1PB1 LINE L1 4533 5345 -801 * 9296 211 16 19 chrY 14900351 14902672 -9810407 - L1PB1 LINE L1 -816 5330 3016 223 250 0 0 chrY 14903647 14903699 -9809380 + (CA)n Simple_repeat Simple_repeat 2 53 0 276 263 0 0 chrY 14903705 14903785 -9809294 + MER103 DNA DNA 12 91 -75 208 258 11 22 chrY 14903847 14903936 -9809143 + L2 LINE L2 1996 2083 -1231 196 296 245 0 chrY 14904141 14904239 -9808840 + L2 LINE L2 3181 3302 -11 2100 225 21 2 chrY 14905075 14905590 -9807489 - L1PB4 LINE L1 -12 6144 5620 306 206 68 14 chrY 14905853 14905926 -9807153 + L2 LINE L2 3191 3267 -5 187 289 0 0 chrY 14906608 14906653 -9806426 + L2 LINE L2 3261 3305 -8 243 296 169 0 chrY 14906775 14906846 -9806233 + L2 LINE L2 3190 3272 0 5110 23 2 3 chrY 14907587 14908209 -9804870 - L1PA2 LINE L1 0 6155 5558 6538 31 0 0 chrY 14908210 14909199 -9803880 + L1PA2 LINE L1 4563 5551 -604 32 57 0 0 chrY 14909496 14909549 -9803530 + AT_rich Low_complexity Low_complexity 1 53 0 476 280 223 5 chrY 14909549 14909925 -9803154 - MLT1H1 LTR MaLR -61 506 47 361 176 0 0 chrY 14910583 14910651 -9802428 - L1PA16 LINE L1 -795 5371 5304 3045 186 67 13 chrY 14910655 14911372 -9801707 + L1PA16 LINE L1 5390 6145 -21 13286 223 63 19 chrY 14911378 14916377 -9796702 + L1MA2 LINE L1 18 4797 -2768 1915 168 10 0 chrY 14916377 14916686 -9796393 + AluSx SINE Alu 1 312 0 13286 223 63 19 chrY 14916686 14917063 -9796016 + L1MA2 LINE L1 4797 5156 -2409 1764 234 29 12 chrY 14917063 14917482 -9795597 + MSTA LTR MaLR 1 426 -2 6688 224 32 17 chrY 14917484 14919110 -9793969 + MSTA-int LTR MaLR 1 1651 0 1625 223 69 10 chrY 14919110 14919514 -9793565 + MSTA LTR MaLR 1 428 0 13286 223 63 19 chrY 14919514 14920507 -9792572 + L1MA2 LINE L1 5155 6669 -896 1412 146 111 56 chrY 14920522 14920843 -9792236 + THE1C LTR MaLR 1 361 -67 1910 133 4 0 chrY 14920843 14921121 -9791958 + AluSg1 SINE Alu 3 281 -28 1412 146 111 56 chrY 14921121 14921193 -9791886 + THE1C LTR MaLR 361 428 0 1141 172 4 0 chrY 14921199 14921432 -9791647 + L1MA2 LINE L1 6688 6921 -803 3211 148 14 3 chrY 14921433 14922009 -9791070 + L1MA2 LINE L1 7137 7718 -5 21 36 0 0 chrY 14922009 14922037 -9791042 + AT_rich Low_complexity Low_complexity 1 28 0 606 191 103 0 chrY 14922039 14922175 -9790904 - MER4B LTR ERV1 -460 150 1 1778 179 3 0 chrY 14922490 14922775 -9790304 + AluSx SINE Alu 1 286 -26 27 0 0 0 chrY 14922782 14922809 -9790270 + AT_rich Low_complexity Low_complexity 1 27 0 578 318 6 0 chrY 14923414 14923587 -9789492 + MER41D LTR ERV1 384 557 0 7418 327 32 25 chrY 14924928 14927762 -9785317 + MER89-int LTR ERV1 1658 4531 -3225 2319 133 5 37 chrY 14927762 14927971 -9785108 - THE1B LTR MaLR 0 364 168 1809 158 4 0 chrY 14927971 14928273 -9784806 + AluSx SINE Alu 23 325 0 2319 133 5 37 chrY 14928273 14928436 -9784643 - THE1B LTR MaLR -196 168 1 7418 327 32 25 chrY 14928436 14929394 -9783685 + MER89-int LTR ERV1 4531 5480 -2276 316 280 68 16 chrY 14929403 14929572 -9783507 + MER89-int LTR ERV1 5560 5806 -2451 807 318 19 3 chrY 14929622 14929999 -9783080 + MER89-int LTR ERV1 5781 6163 -1593 308 310 82 82 chrY 14930152 14930397 -9782682 - L1M2 LINE L1 -5769 1080 836 610 189 70 0 chrY 14936459 14936602 -9776477 - L1MB3 LINE L1 -11 6172 6020 362 270 135 25 chrY 14936620 14936820 -9776259 + L1M4 LINE L1 5128 5349 -797 5285 245 71 24 chrY 14936895 14938890 -9774189 - L1MB3 LINE L1 -75 6108 3923 342 0 0 0 chrY 14938890 14938928 -9774151 + (TG)n Simple_repeat Simple_repeat 1 38 0 5285 245 71 24 chrY 14938928 14940014 -9773065 - L1MB3 LINE L1 -2260 3923 2889 294 307 39 31 chrY 14941113 14941240 -9771839 - MIR SINE MIR -124 138 11 2168 148 27 3 chrY 14941609 14941974 -9771105 - Charlie3 DNA MER1_type -4 2706 2333 182 300 43 14 chrY 14942218 14942288 -9770791 + L2 LINE L2 2283 2354 -960 1313 309 60 11 chrY 14942309 14942362 -9770717 + MLT1F1 LTR MaLR 1 50 -517 5470 187 27 48 chrY 14942362 14943689 -9769390 + HSMAR2 DNA Mariner 2 1301 -1 1313 309 60 11 chrY 14943689 14944169 -9768910 + MLT1F1 LTR MaLR 50 560 -7 1455 201 43 7 chrY 14944205 14944508 -9768571 - Tigger3(Golem) DNA MER2_type 0 3029 2716 603 278 92 48 chrY 14944536 14944831 -9768248 + MER89-int LTR ERV1 6 313 -6488 1024 280 31 53 chrY 14945511 14946001 -9767078 + MER89-int LTR ERV1 1008 1486 -5315 465 228 139 72 chrY 14946759 14947057 -9766022 - MLT1E LTR MaLR -6 621 323 349 293 66 54 chrY 14947243 14947282 -9765797 + MLT1A1 LTR MaLR 104 141 -224 219 36 0 0 chrY 14947282 14947310 -9765769 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 349 293 66 54 chrY 14947310 14947529 -9765550 + MLT1A1 LTR MaLR 141 365 0 182 358 88 0 chrY 14947899 14948047 -9765032 - MIR SINE MIR -54 208 48 1221 193 8 51 chrY 14948665 14948919 -9764160 - AluJo SINE Alu -14 298 56 2378 87 7 3 chrY 14949526 14949836 -9763243 + AluY SINE Alu 1 311 0 2142 148 0 0 chrY 14950602 14950936 -9762143 + AluY SINE Alu 1 334 0 9154 148 8 9 chrY 14951220 14951479 -9761600 - L1PA7 LINE L1 -5 6464 6206 2011 150 0 3 chrY 14951479 14951793 -9761286 - AluSp SINE Alu 0 313 1 9154 148 8 9 chrY 14951793 14953911 -9759168 - L1PA7 LINE L1 -263 6206 4099 3805 248 75 41 chrY 14953923 14955720 -9757359 - L1PA7 LINE L1 -4636 1815 10 21 0 0 0 chrY 14955757 14955778 -9757301 + AT_rich Low_complexity Low_complexity 1 21 0 195 69 0 0 chrY 14956203 14956232 -9756847 + (T)n Simple_repeat Simple_repeat 1 29 0 2006 150 0 0 chrY 14956668 14956962 -9756117 + AluSg SINE Alu 1 294 -16 303 96 0 0 chrY 14957085 14957137 -9755942 + (TTA)n Simple_repeat Simple_repeat 2 53 0 1384 233 3 0 chrY 14957232 14957519 -9755560 - AluJo SINE Alu -24 288 1 21 0 0 0 chrY 14958220 14958241 -9754838 + AT_rich Low_complexity Low_complexity 1 21 0 5788 127 22 34 chrY 14958866 14959991 -9753088 - L1MA1 LINE L1 0 6302 5191 2014 185 0 0 chrY 14960037 14960399 -9752680 - L1PB1 LINE L1 -8 6143 5782 310 231 33 44 chrY 14960410 14960501 -9752578 - L1MC4 LINE L1 -1339 6703 6614 391 188 43 0 chrY 14960527 14960644 -9752435 + (CA)n Simple_repeat Simple_repeat 2 123 0 2760 185 43 24 chrY 14960644 14961912 -9751167 - L1P5 LINE L1 -369 5782 4477 998 168 23 0 chrY 14961929 14962102 -9750977 - AluSp SINE Alu -2 311 135 4336 217 47 29 chrY 14962110 14963370 -9749709 - L1MA1 LINE L1 -1662 4484 3202 3098 95 42 8 chrY 14963375 14963798 -9749281 + LTR15 LTR ERV1 5 447 -46 410 0 0 20 chrY 14963798 14963849 -9749230 + (TAA)n Simple_repeat Simple_repeat 2 51 0 3098 95 42 8 chrY 14963849 14963898 -9749181 + LTR15 LTR ERV1 447 493 0 31984 135 10 11 chrY 14963898 14969074 -9744005 + HERV15 LTR ERV1 1 5175 -3560 180 0 0 0 chrY 14969074 14969094 -9743985 + (TA)n Simple_repeat Simple_repeat 2 21 0 31984 135 10 11 chrY 14969094 14969143 -9743936 + HERV15 LTR ERV1 5175 5223 -3512 14925 110 10 5 chrY 14969133 14971385 -9741694 + HERV15 LTR ERV1 6388 8650 -85 * 1995 290 20 40 chrY 14971382 14972254 -9740825 + LTR25-int LTR ERV1 1536 2416 -4580 * 1400 211 0 0 chrY 14972350 14972630 -9740449 + HERVK3 LTR ERVK 2909 3188 -4055 4486 272 13 2 chrY 14972638 14973864 -9739215 + HERVK3 LTR ERVK 6003 7241 -2 2242 177 5 21 chrY 14973867 14974303 -9738776 + LTR3 LTR ERVK 1 429 0 851 230 5 0 chrY 14974329 14974520 -9738559 + AluSg/x SINE Alu 119 310 0 295 178 65 2 chrY 14974632 14974721 -9738358 + L1MC3 LINE L1 5296 5388 -956 1336 224 7 7 chrY 14975073 14975388 -9737691 + AluSx SINE Alu 1 315 0 1227 259 64 47 chrY 14976182 14976804 -9736275 + L1MC3 LINE L1 5386 6018 -1767 470 180 54 9 chrY 14977000 14977111 -9735968 - L1MB3 LINE L1 0 6183 6068 397 216 99 9 chrY 14977115 14977226 -9735853 - L1MB3 LINE L1 -625 5549 5429 447 286 23 0 chrY 14977236 14977411 -9735668 + L1M4 LINE L1 5067 5245 -901 954 188 37 9 chrY 14977419 14977637 -9735442 + MER50 LTR ERV1 511 734 0 2247 234 68 20 chrY 14977784 14978499 -9734580 - L1MB5 LINE L1 -10 6164 5415 434 257 0 18 chrY 14979575 14979806 -9733273 + (CCCTAA)n Simple_repeat Simple_repeat 1 226 0 321 197 0 90 chrY 14979835 14980013 -9733066 + (CCCTAA)n Simple_repeat Simple_repeat 5 166 0 325 218 5 25 chrY 14980031 14980243 -9732836 + (CCCTAA)n Simple_repeat Simple_repeat 1 207 0 233 269 5 11 chrY 14980271 14980457 -9732622 + (CCCTAA)n Simple_repeat Simple_repeat 1 185 0 208 154 0 55 chrY 14980533 14980624 -9732455 + (CCCTAA)n Simple_repeat Simple_repeat 5 90 0 236 176 15 44 chrY 14980651 14980719 -9732360 + (CCCTAA)n Simple_repeat Simple_repeat 4 69 0 331 239 6 43 chrY 14980776 14980939 -9732140 + (CCCTAA)n Simple_repeat Simple_repeat 2 158 0 265 194 0 44 chrY 14980958 14981138 -9731941 + (CCCTAA)n Simple_repeat Simple_repeat 4 175 0 201 259 20 48 chrY 14981156 14981303 -9731776 + (CCCTAA)n Simple_repeat Simple_repeat 2 144 0 293 159 0 14 chrY 14981332 14981401 -9731678 + (CCCTAA)n Simple_repeat Simple_repeat 5 72 0 257 218 0 29 chrY 14981498 14981668 -9731411 + (CCCTAA)n Simple_repeat Simple_repeat 5 169 0 618 262 115 0 chrY 14983163 14983346 -9729733 + MER3 DNA MER1_type 2 205 -4 1261 206 0 0 chrY 14983447 14983680 -9729399 + AluSx SINE Alu 32 264 -48 672 48 0 0 chrY 14983734 14983818 -9729261 + (GGAA)n Simple_repeat Simple_repeat 4 87 0 2535 138 30 45 chrY 14983866 14984359 -9728720 - LTR22B LTR ERVK -2 490 5 959 223 169 16 chrY 14984924 14985296 -9727783 + L1M4 LINE L1 4775 5203 -943 458 191 211 26 chrY 14985300 14985452 -9727627 + L1MC3 LINE L1 6093 6272 -1513 309 310 85 55 chrY 14985968 14986239 -9726840 - L1MC/D LINE L1 -2493 5549 5271 414 153 133 51 chrY 14986457 14986555 -9726524 + FLAM_C SINE Alu 15 120 -23 264 59 0 0 chrY 14986555 14986589 -9726490 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 333 268 68 63 chrY 14986620 14986810 -9726269 - L1MC4 LINE L1 -12 8030 7840 442 323 90 52 chrY 14988923 14989233 -9723846 + L2 LINE L2 2946 3267 -5 1172 275 25 11 chrY 14989434 14989718 -9723361 + AluJb SINE Alu 1 288 -14 1731 187 10 0 chrY 14989863 14990162 -9722917 - AluSq SINE Alu -11 302 1 1834 184 10 0 chrY 14990291 14990584 -9722495 - AluSg1 SINE Alu -13 296 1 280 308 164 6 chrY 14991097 14991256 -9721823 - L3 LINE CR1 -1195 382 199 186 71 0 0 chrY 14991894 14991922 -9721157 + (T)n Simple_repeat Simple_repeat 1 28 0 543 230 0 0 chrY 14991952 14992052 -9721027 - FLAM_A SINE Alu -21 121 22 1692 176 28 0 chrY 14992197 14992481 -9720598 - AluSq SINE Alu -21 292 1 22 35 0 0 chrY 14993788 14993817 -9719262 + AT_rich Low_complexity Low_complexity 1 29 0 194 289 289 0 chrY 14996285 14996413 -9716666 + MIR SINE MIR 82 246 -16 1266 243 3 23 chrY 14996726 14996910 -9716169 - AluSx SINE Alu -6 306 129 1575 219 3 0 chrY 14996910 14997221 -9715858 - AluSx SINE Alu 0 312 1 676 245 50 0 chrY 14997221 14997345 -9715734 - AluJb SINE Alu -177 135 4 1266 243 3 23 chrY 14997221 14997345 -9715734 - AluSx SINE Alu -183 129 4 1087 204 5 9 chrY 14997831 14998047 -9715032 - AluSc SINE Alu -94 215 1 243 253 38 38 chrY 14998160 14998239 -9714840 + LTR33 LTR ERVL 75 153 -368 682 248 97 21 chrY 14998665 14999181 -9713898 - L1MC/D LINE L1 -748 5398 5017 5396 210 28 6 chrY 14999242 14999645 -9713434 + L1PA7 LINE L1 5 398 -6063 207 0 0 0 chrY 14999645 14999668 -9713411 + (TTG)n Simple_repeat Simple_repeat 2 24 0 5396 210 28 6 chrY 14999668 15000359 -9712720 + L1PA7 LINE L1 398 1123 -5338 * 15817 139 15 10 chrY 15000347 15003823 -9709256 + L1PA7 LINE L1 2882 6376 -93 652 38 0 0 chrY 15003821 15003901 -9709178 - L1P LINE L1 -732 5422 5343 * 4565 168 11 1 chrY 15003900 15004705 -9708374 + L1PA14 LINE L1 5336 6148 -13 21 0 0 0 chrY 15007129 15007150 -9705929 + AT_rich Low_complexity Low_complexity 1 21 0 1963 273 96 4 chrY 15007535 15008441 -9704638 - L1M4 LINE L1 -753 5393 4405 583 303 28 0 chrY 15008450 15008628 -9704451 - AluJo SINE Alu -11 301 119 596 81 11 0 chrY 15008919 15009006 -9704073 + (TC)n Simple_repeat Simple_repeat 1 88 0 548 279 94 23 chrY 15009006 15009271 -9703808 - AluJb SINE Alu -10 302 19 22 70 0 0 chrY 15009755 15009798 -9703281 + AT_rich Low_complexity Low_complexity 1 43 0 388 275 15 18 chrY 15010332 15010399 -9702680 - L1M4 LINE L1 -1760 4386 4320 1723 173 17 0 chrY 15010399 15010694 -9702385 + AluSp SINE Alu 1 300 -13 388 275 15 18 chrY 15010694 15010819 -9702260 - L1M4 LINE L1 -1826 4320 4182 332 211 6 33 chrY 15011554 15011734 -9701345 + (TTAGGG)n Simple_repeat Simple_repeat 1 175 0 649 154 66 22 chrY 15111743 15111879 -9601200 - THE1C LTR MaLR -233 142 1 180 0 0 0 chrY 15113276 15113296 -9599783 + (TTTTTG)n Simple_repeat Simple_repeat 3 22 0 185 331 60 38 chrY 15113366 15113499 -9599580 + MIR SINE MIR 79 214 -48 192 77 0 0 chrY 15114770 15114796 -9598283 + (A)n Simple_repeat Simple_repeat 1 26 0 310 140 17 56 chrY 15115647 15115826 -9597253 + (CCCTAA)n Simple_repeat Simple_repeat 3 174 0 446 224 0 43 chrY 15115837 15115998 -9597081 + (CCCTAA)n Simple_repeat Simple_repeat 5 158 0 248 215 23 23 chrY 15116015 15116187 -9596892 + (CCCTAA)n Simple_repeat Simple_repeat 2 173 0 21 0 0 0 chrY 15116313 15116334 -9596745 + AT_rich Low_complexity Low_complexity 1 21 0 484 354 74 13 chrY 15116482 15116559 -9596520 + L1M4 LINE L1 3732 3803 -2343 261 0 0 0 chrY 15116559 15116588 -9596491 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 484 354 74 13 chrY 15116588 15116900 -9596179 + L1M4 LINE L1 3803 4145 -2001 524 171 13 13 chrY 15116905 15117057 -9596022 + (TA)n Simple_repeat Simple_repeat 2 153 0 4461 208 31 2 chrY 15117560 15118501 -9594578 + L1P3 LINE L1 6 973 -5488 531 207 86 0 chrY 15118648 15118788 -9594291 + MSTD LTR MaLR 238 389 -7 219 36 0 0 chrY 15122455 15122483 -9590596 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 304 383 58 36 chrY 15123426 15123734 -9589345 + L2 LINE L2 2944 3258 -14 1053 269 33 0 chrY 15123944 15124215 -9588864 + AluJb SINE Alu 1 280 -32 7284 203 47 18 chrY 15124379 15126072 -9587007 + HERV3 LTR ERV1 6075 7817 -609 975 208 67 104 chrY 15126925 15127300 -9585779 - MLT1A1 LTR MaLR -2 363 3 1011 184 0 88 chrY 15129065 15129293 -9583786 - AluSq SINE Alu -24 289 82 22 35 0 0 chrY 15130192 15130221 -9582858 + AT_rich Low_complexity Low_complexity 1 29 0 2071 243 8 2 chrY 15130338 15130820 -9582259 + MER1A DNA MER1_type 28 512 -17 1724 73 8 8 chrY 15130991 15131251 -9581828 - L1P1 LINE L1 -511 5644 5385 1644 181 7 13 chrY 15131843 15132147 -9580932 + AluSc SINE Alu 1 302 -7 1332 172 65 26 chrY 15133127 15133435 -9579644 + MER33 DNA MER1_type 5 324 0 192 216 0 59 chrY 15133591 15133642 -9579437 + L3b LINE CR1 1286 1333 -250 1480 200 7 23 chrY 15134381 15134681 -9578398 - AluJo SINE Alu -17 295 1 1115 182 18 5 chrY 15134844 15135064 -9578015 + LTR9B LTR ERV1 4 226 -418 328 54 18 18 chrY 15135608 15135664 -9577415 + (TG)n Simple_repeat Simple_repeat 1 56 0 443 358 5 14 chrY 15135712 15135919 -9577160 - AluJb SINE Alu -107 205 1 322 290 0 20 chrY 15136319 15136419 -9576660 - AluJb SINE Alu -121 181 84 28 48 0 0 chrY 15136752 15136794 -9576285 + AT_rich Low_complexity Low_complexity 1 42 0 980 315 9 10 chrY 15136886 15137278 -9575801 - MER52A LTR ERV1 -487 1268 923 1521 146 8 0 chrY 15137365 15137605 -9575474 + AluSp SINE Alu 66 307 -6 236 145 0 16 chrY 15137618 15137680 -9575399 + (TAAA)n Simple_repeat Simple_repeat 2 62 0 372 239 18 31 chrY 15137787 15137950 -9575129 + (CCCTAA)n Simple_repeat Simple_repeat 1 161 0 189 214 0 27 chrY 15137966 15138078 -9575001 + (CCCTAA)n Simple_repeat Simple_repeat 6 114 0 257 230 0 46 chrY 15138093 15138385 -9574694 + (CCCTAA)n Simple_repeat Simple_repeat 1 278 0 210 224 31 41 chrY 15138445 15138543 -9574536 + (CCCTAA)n Simple_repeat Simple_repeat 5 101 0 342 300 111 64 chrY 15138743 15139086 -9573993 + L1M2 LINE L1 837 1195 -5654 23 0 0 0 chrY 15140174 15140197 -9572882 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chrY 15140838 15140866 -9572213 + AT_rich Low_complexity Low_complexity 1 28 0 4172 113 3 2 chrY 15141111 15141697 -9571382 - LTR14C LTR ERVK 0 587 1 6133 108 17 2 chrY 15141697 15142649 -9570430 - HERVK14C LTR ERVK 0 7417 6452 255 122 0 0 chrY 15142749 15142798 -9570281 + (G)n Simple_repeat Simple_repeat 1 49 0 425 225 56 12 chrY 15142838 15142998 -9570081 + AluYa5 SINE Alu 136 302 -9 924 215 116 8 chrY 15143100 15143351 -9569728 + AluJb SINE Alu 19 296 -16 21 0 0 0 chrY 15143615 15143636 -9569443 + AT_rich Low_complexity Low_complexity 1 21 0 1944 175 24 70 chrY 15143763 15144339 -9568740 + MER4B LTR ERV1 25 721 -45 25 0 0 0 chrY 15144510 15144535 -9568544 + AT_rich Low_complexity Low_complexity 1 25 0 398 268 43 80 chrY 15145392 15145599 -9567480 + L1M4 LINE L1 4306 4502 -1644 1309 213 88 4 chrY 15145599 15145872 -9567207 + AluSx SINE Alu 1 296 -16 398 268 43 80 chrY 15145872 15145940 -9567139 + L1M4 LINE L1 4502 4571 -1575 258 256 101 35 chrY 15145973 15146172 -9566907 + L1M4 LINE L1 4670 4881 -1265 1435 201 15 4 chrY 15146481 15146754 -9566325 + AluSx SINE Alu 1 276 -36 23 0 0 0 chrY 15147084 15147107 -9565972 + AT_rich Low_complexity Low_complexity 1 23 0 759 148 0 28 chrY 15148013 15148155 -9564924 - LTR14C LTR ERVK 0 587 450 579 214 58 62 chrY 15148241 15148484 -9564595 + MER33 DNA MER1_type 5 246 -78 739 205 74 64 chrY 15148501 15148798 -9564281 + MER33 DNA MER1_type 25 324 0 3155 172 18 28 chrY 15149538 15150207 -9562872 - HUERS-P3b LTR ERV1 -2066 5352 4691 2030 209 57 6 chrY 15150199 15150730 -9562349 - HUERS-P3b LTR ERV1 -2925 4493 3936 * 3178 164 58 50 chrY 15150726 15151453 -9561626 - HUERS-P3b LTR ERV1 -3624 3794 3062 1674 254 31 2 chrY 15151453 15151867 -9561212 + LTR8 LTR ERV1 12 437 -254 3057 141 9 11 chrY 15151867 15152400 -9560679 - HUERS-P3b LTR ERV1 -4773 2645 2114 586 73 0 12 chrY 15152569 15152651 -9560428 - HERVK14C LTR ERVK -1702 5715 5635 * 6840 132 2 2 chrY 15152636 15154168 -9558911 - HERVK14C LTR ERVK -5844 1573 3 3779 120 3 33 chrY 15154170 15154772 -9558307 - LTR14C LTR ERVK -3 584 1 400 295 68 42 chrY 15155007 15155244 -9557835 + L1MC4 LINE L1 7799 8041 -1 1367 222 14 24 chrY 15156058 15156351 -9556728 - AluJo SINE Alu -22 290 1 3211 170 57 5 chrY 15156502 15157113 -9555966 + LTR9B LTR ERV1 2 644 0 720 261 20 45 chrY 15157113 15157544 -9555535 + HUERS-P3b LTR ERV1 1 506 -6912 2898 231 23 39 chrY 15157590 15158386 -9554693 + HUERS-P3b LTR ERV1 764 1546 -5872 300 259 0 0 chrY 15158386 15158494 -9554585 + (TA)n Simple_repeat Simple_repeat 2 109 0 303 28 0 0 chrY 15158496 15158532 -9554547 + (TG)n Simple_repeat Simple_repeat 1 36 0 664 229 6 24 chrY 15158533 15158703 -9554376 - AluSg/x SINE Alu -34 278 112 208 174 29 29 chrY 15158722 15158791 -9554288 + (CCCA)n Simple_repeat Simple_repeat 2 70 0 213 239 30 30 chrY 15158817 15158951 -9554128 + (CACAA)n Simple_repeat Simple_repeat 5 138 0 331 244 30 23 chrY 15159093 15159224 -9553855 - AluYb8 SINE Alu -171 137 6 618 262 115 0 chrY 15160517 15160700 -9552379 + MER3 DNA MER1_type 2 205 -4 1261 206 0 0 chrY 15160801 15161034 -9552045 + AluSx SINE Alu 32 264 -48 672 48 0 0 chrY 15161088 15161172 -9551907 + (GGAA)n Simple_repeat Simple_repeat 4 87 0 2535 138 30 45 chrY 15161220 15161713 -9551366 - LTR22B LTR ERVK -2 490 5 916 230 173 14 chrY 15162278 15162648 -9550431 + L1M4 LINE L1 4775 5203 -943 452 191 211 26 chrY 15162652 15162804 -9550275 + L1MC3 LINE L1 6093 6272 -1513 5880 115 25 12 chrY 15164638 15165969 -9547110 - L1PA8 LINE L1 -2 6170 4826 16373 188 13 33 chrY 15165972 15167513 -9545566 - L1PA8 LINE L1 -1582 4564 2994 1205 243 40 17 chrY 15167513 15167813 -9545266 - AluSx SINE Alu -2 310 4 16373 188 13 33 chrY 15167813 15170224 -9542855 - L1PA8 LINE L1 -3152 2994 690 422 294 10 5 chrY 15171664 15171790 -9541289 + FLAM_C SINE Alu 13 123 -10 564 234 10 94 chrY 15171799 15172000 -9541079 + AluJo SINE Alu 12 195 -117 277 235 88 29 chrY 15172002 15172104 -9540975 - MER67C LTR ERV1 -116 594 487 25 65 0 0 chrY 15172440 15172486 -9540593 + AT_rich Low_complexity Low_complexity 1 46 0 29 0 0 0 chrY 15173028 15173057 -9540022 + AT_rich Low_complexity Low_complexity 1 29 0 538 271 85 10 chrY 15173278 15173477 -9539602 - L1MB5 LINE L1 -12 6162 5949 214 186 0 0 chrY 15173557 15173600 -9539479 + T-rich Low_complexity Low_complexity 2 44 0 1368 226 21 0 chrY 15174888 15175175 -9537904 - AluSx SINE Alu -9 303 11 297 0 0 0 chrY 15175627 15175660 -9537419 + (CA)n Simple_repeat Simple_repeat 2 34 0 898 156 23 40 chrY 15176444 15176617 -9536462 + AluSg/x SINE Alu 118 287 -23 1125 290 91 33 chrY 15177191 15177969 -9535110 + L1MDa LINE L1 35 1071 -5469 1266 151 79 118 chrY 15177992 15178154 -9534925 - MER52C LTR ERV1 0 1278 1111 2824 189 28 5 chrY 15178154 15178721 -9534358 + LTR22 LTR ERVK 1 580 0 1266 151 79 118 chrY 15178721 15178963 -9534116 - MER52C LTR ERV1 -167 1111 890 1140 267 72 50 chrY 15178967 15179781 -9533298 - L1M4 LINE L1 -942 5204 4373 2126 122 6 31 chrY 15180088 15180408 -9532671 + AluSp SINE Alu 1 312 -1 25 0 0 0 chrY 15180547 15180572 -9532507 + AT_rich Low_complexity Low_complexity 1 25 0 32492 179 22 5 chrY 15180791 15186690 -9526389 - HERV3 LTR ERV1 -2071 6150 165 413 321 14 37 chrY 15186750 15186965 -9526114 - L1MDa LINE L1 -6213 327 118 256 167 9 185 chrY 15188347 15188574 -9524505 + MER53 DNA DNA 2 188 -1 9774 153 40 24 chrY 15190943 15192906 -9520173 - HUERS-P3b LTR ERV1 -734 6684 4691 2207 194 50 8 chrY 15192898 15193433 -9519646 - HUERS-P3b LTR ERV1 -2925 4493 3936 * 2913 172 64 69 chrY 15193429 15193921 -9519158 - HUERS-P3b LTR ERV1 -3624 3794 3306 2317 103 0 10 chrY 15193921 15194231 -9518848 - AluY SINE Alu -4 307 1 2913 172 64 69 chrY 15194231 15194475 -9518604 - HUERS-P3b LTR ERV1 -4112 3306 3062 1793 234 31 5 chrY 15194475 15194894 -9518185 + LTR8 LTR ERV1 12 441 -250 5986 154 16 10 chrY 15194894 15195991 -9517088 - HUERS-P3b LTR ERV1 -4776 2642 1539 1729 178 0 0 chrY 15195991 15196272 -9516807 + AluSg SINE Alu 1 281 -29 390 171 0 0 chrY 15196281 15196300 -9516779 + (TA)n Simple_repeat Simple_repeat 2 20 -63 302 0 26 0 chrY 15196300 15196338 -9516741 + (TG)n Simple_repeat Simple_repeat 2 40 0 390 171 0 0 chrY 15196338 15196400 -9516679 + (TA)n Simple_repeat Simple_repeat 19 83 0 2857 234 19 47 chrY 15196400 15197206 -9515873 - HUERS-P3b LTR ERV1 -5872 1546 764 758 240 21 46 chrY 15197254 15197682 -9515397 - HUERS-P3b LTR ERV1 -6914 504 1 1412 218 25 32 chrY 15197682 15198085 -9514994 - LTR9B LTR ERV1 0 644 245 216 0 0 0 chrY 15198326 15198350 -9514729 + (A)n Simple_repeat Simple_repeat 1 24 0 8848 258 23 22 chrY 15198367 15201297 -9511782 + HERV3 LTR ERV1 2161 5099 -3327 3724 104 33 39 chrY 15201298 15202343 -9510736 - MER11A LTR ERVK 0 1266 1 4184 277 50 13 chrY 15202343 15203512 -9509567 + HERV3 LTR ERV1 5095 6306 -2120 515 233 8 15 chrY 15203610 15203743 -9509336 + HERV3 LTR ERV1 8287 8418 -8 1681 202 66 47 chrY 15203753 15204267 -9508812 + LTR61 LTR ERV1 72 595 0 1693 176 32 0 chrY 15204286 15204570 -9508509 - AluSg SINE Alu -17 293 1 201 324 176 18 chrY 15205520 15205690 -9507389 + MIR3 SINE MIR 8 204 -4 192 304 127 19 chrY 15207255 15207413 -9505666 - L2 LINE L2 -7 3265 3091 2303 171 52 27 chrY 15209130 15209610 -9503469 + LTR22B LTR ERVK 1 492 0 272 252 52 30 chrY 15209877 15210012 -9503067 + L1MC3 LINE L1 5880 6017 -1768 2002 136 3 7 chrY 15210140 15210434 -9502645 + AluY SINE Alu 2 294 -17 488 208 0 0 chrY 15210521 15210627 -9502452 - L1MB3 LINE L1 -10 6173 6068 659 192 90 12 chrY 15210630 15210697 -9502382 - L1MB3 LINE L1 -628 5550 5490 230 0 33 0 chrY 15210697 15210727 -9502352 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 659 192 90 12 chrY 15210727 15210826 -9502253 - L1MB3 LINE L1 -688 5490 5371 * 2634 238 69 3 chrY 15210817 15211866 -9501213 + L1MB5 LINE L1 5062 6174 0 1889 248 46 59 chrY 15212024 15212758 -9500321 - MER50 LTR ERV1 0 734 10 317 266 53 26 chrY 15213268 15213381 -9499698 - L1M4 LINE L1 -5569 973 858 189 171 0 0 chrY 15213409 15213444 -9499635 + A-rich Low_complexity Low_complexity 1 35 0 649 281 49 5 chrY 15213592 15213795 -9499284 + AluJb SINE Alu 7 218 -94 430 287 9 9 chrY 15213793 15213908 -9499171 + AluJb SINE Alu 168 282 -30 * 485 292 148 49 chrY 15213945 15214417 -9498662 - L1M4 LINE L1 -5940 602 84 1787 182 0 0 chrY 15214526 15214812 -9498267 - AluSx SINE Alu -24 288 3 29 47 0 0 chrY 15215491 15215534 -9497545 + AT_rich Low_complexity Low_complexity 1 43 0 294 215 0 0 chrY 15216271 15216350 -9496729 + C-rich Low_complexity Low_complexity 1 79 0 538 296 3 37 chrY 15216433 15216757 -9496322 + AluSp SINE Alu 1 313 0 23 33 0 0 chrY 15216893 15216923 -9496156 + AT_rich Low_complexity Low_complexity 1 30 0 579 288 26 57 chrY 15216923 15217274 -9495805 - L1MDa LINE L1 -6145 395 56 2291 159 84 13 chrY 15217454 15217931 -9495148 - MER9 LTR ERVK 0 511 1 10711 177 37 48 chrY 15217948 15220558 -9492521 - HERVK9 LTR ERVK -16 5900 3321 678 223 11 17 chrY 15220556 15220731 -9492348 - HERVK9 LTR ERVK -5742 174 1 * 1471 186 148 5 chrY 15220731 15221108 -9491971 - MER9 LTR ERVK 0 511 81 246 272 0 33 chrY 15221269 15221361 -9491718 + MIR SINE MIR 125 213 -49 1334 109 5 5 chrY 15222372 15222564 -9490515 + AluY SINE Alu 1 192 -119 1636 175 3 3 chrY 15223175 15223460 -9489619 + AluY SINE Alu 27 311 0 250 44 22 22 chrY 15225621 15225666 -9487413 + (TTTTG)n Simple_repeat Simple_repeat 1 45 0 1370 204 59 3 chrY 15226575 15226864 -9486215 - AluSq SINE Alu -8 305 1 247 340 113 11 chrY 15227456 15227641 -9485438 - L3 LINE CR1 -1180 397 194 672 224 0 15 chrY 15228235 15228369 -9484710 - FLAM_A SINE Alu -1 132 1 201 288 34 0 chrY 15229586 15229645 -9483434 + L2 LINE L2 3250 3310 -3 22 35 0 0 chrY 15231219 15231248 -9481831 + AT_rich Low_complexity Low_complexity 1 29 0 1279 219 3 71 chrY 15231341 15231537 -9481542 - AluSx SINE Alu -9 303 136 1420 235 0 11 chrY 15231537 15231822 -9481257 - AluSx SINE Alu -30 282 1 1279 219 3 71 chrY 15231822 15231950 -9481129 - AluSx SINE Alu -176 136 1 21 36 0 0 chrY 15233131 15233159 -9479920 + AT_rich Low_complexity Low_complexity 1 28 0 419 276 78 56 chrY 15234428 15234662 -9478417 + MIR SINE MIR 6 255 -7 472 218 21 128 chrY 15235310 15235429 -9477650 - MER46C DNA MER2_type -117 221 140 2070 141 0 6 chrY 15235429 15235742 -9477337 - AluY SINE Alu 0 311 1 472 218 21 128 chrY 15235742 15235865 -9477214 - MER46C DNA MER2_type -198 140 5 1565 200 7 16 chrY 15237653 15237958 -9475121 - AluSx SINE Alu -8 304 3 1401 167 57 144 chrY 15238208 15238784 -9474295 + LTR61 LTR ERV1 70 595 0 1544 245 5 16 chrY 15238793 15239181 -9473898 + HERV3 LTR ERV1 10 393 -8033 * 3067 274 66 28 chrY 15239180 15240246 -9472833 + HERV3 LTR ERV1 299 1404 -7022 387 0 0 0 chrY 15240390 15240433 -9472646 + (CA)n Simple_repeat Simple_repeat 2 44 0 644 169 0 7 chrY 15241214 15241350 -9471729 + GA-rich Low_complexity Low_complexity 3 137 0 715 271 48 0 chrY 15243035 15243242 -9469837 - MER20 DNA MER1_type 0 219 3 314 228 70 35 chrY 15243387 15243501 -9469578 - L1MC4 LINE L1 -1328 6714 6597 1489 179 4 15 chrY 15244293 15244561 -9468518 + AluSq SINE Alu 1 265 -48 341 256 16 16 chrY 15245208 15245329 -9467750 - MER117 DNA MER1_type -74 123 3 753 308 69 78 chrY 15245329 15246010 -9467069 - L3 LINE CR1 -283 1294 620 462 18 0 0 chrY 15246025 15246080 -9466999 + (TA)n Simple_repeat Simple_repeat 2 56 0 288 0 0 0 chrY 15246080 15246112 -9466967 + (TG)n Simple_repeat Simple_repeat 2 33 0 236 246 72 29 chrY 15246616 15246685 -9466394 - L2 LINE L2 -7 3265 3194 1244 260 52 27 chrY 15246923 15247403 -9465676 - MLT1D LTR MaLR -4 501 10 1743 183 0 0 chrY 15247629 15247918 -9465161 + AluSx SINE Alu 1 289 -23 6944 146 38 74 chrY 15247922 15249426 -9463653 - L1P3 LINE L1 -4633 1828 377 571 132 35 126 chrY 15249446 15249620 -9463459 - LTR19B-int LTR ERV1 -2260 4736 4579 2815 200 50 12 chrY 15249761 15250357 -9462722 - LTR19B-int LTR ERV1 -7099 620 2 1634 183 49 3 chrY 15250357 15250685 -9462394 - LTR19B LTR ERV1 0 580 238 699 131 0 0 chrY 15250686 15250793 -9462286 - LTR19B LTR ERV1 -473 107 1 180 0 0 0 chrY 15250823 15250843 -9462236 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 22 0 0 0 chrY 15251585 15251607 -9461472 + AT_rich Low_complexity Low_complexity 1 22 0 273 98 0 0 chrY 15251668 15251709 -9461370 + (TA)n Simple_repeat Simple_repeat 2 42 0 1594 152 16 60 chrY 15251839 15252155 -9460924 - AluSg SINE Alu -8 302 1 255 290 130 30 chrY 15252174 15252274 -9460805 + MER5B DNA MER1_type 44 153 -25 325 273 91 57 chrY 15253110 15253374 -9459705 - MER46C DNA MER2_type -39 299 27 1221 174 36 0 chrY 15254254 15254518 -9458561 - AluSg/x SINE Alu 0 348 77 197 269 19 0 chrY 15255246 15255298 -9457781 - L2 LINE L2 -8 3264 3212 512 201 7 72 chrY 15256018 15256157 -9456922 + FRAM SINE Alu 4 133 -43 230 355 118 14 chrY 15256274 15256494 -9456585 + MIR SINE MIR 20 262 0 1035 152 6 0 chrY 15256847 15257011 -9456068 + U1 snRNA snRNA 1 165 0 566 28 14 0 chrY 15257013 15257085 -9455994 + (GGAAA)n Simple_repeat Simple_repeat 3 75 0 24 0 0 0 chrY 15257359 15257383 -9455696 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chrY 15258152 15258175 -9454904 + AT_rich Low_complexity Low_complexity 1 23 0 950 120 5 19 chrY 15258206 15258424 -9454655 + (TTTC)n Simple_repeat Simple_repeat 1 214 0 1510 179 11 7 chrY 15258425 15258705 -9454374 - AluSq SINE Alu -32 281 1 649 299 83 96 chrY 15259321 15260237 -9452842 - MER21-int LTR ERV1 -1011 3180 2277 1167 257 21 37 chrY 15260721 15261157 -9451922 - L1MA4 LINE L1 -2 6298 5870 181 310 69 23 chrY 15261983 15262070 -9451009 - L2 LINE L2 -24 3248 3158 2674 7 0 0 chrY 15262424 15262720 -9450359 + AluYa5 SINE Alu 1 296 -15 378 0 0 0 chrY 15263432 15263474 -9449605 + (TA)n Simple_repeat Simple_repeat 2 43 0 * 423 0 0 0 chrY 15263473 15263520 -9449559 + (TG)n Simple_repeat Simple_repeat 2 48 0 1037 246 96 7 chrY 15265079 15265351 -9447728 + AluSx SINE Alu 6 301 -11 1587 201 16 39 chrY 15265512 15265876 -9447203 - L1PA8A LINE L1 -157 5974 5619 461 204 23 0 chrY 15265879 15265967 -9447112 - AluSq SINE Alu -106 207 118 557 242 92 26 chrY 15265990 15266230 -9446849 + L1P5 LINE L1 5376 5631 -520 265 284 128 9 chrY 15266509 15266618 -9446461 - LTR40b LTR ERVL -252 210 89 1112 226 19 39 chrY 15266627 15266939 -9446140 + L1MB7 LINE L1 5876 6174 -10 1044 218 37 26 chrY 15267504 15267639 -9445440 + AluSx SINE Alu 2 134 -178 183 42 0 0 chrY 15267639 15267663 -9445416 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1044 218 37 26 chrY 15267663 15267798 -9445281 + AluSx SINE Alu 134 275 -37 516 32 0 0 chrY 15267821 15267883 -9445196 + (TAGA)n Simple_repeat Simple_repeat 4 65 0 184 209 47 23 chrY 15267926 15267969 -9445110 - L2 LINE L2 -79 3234 3191 468 253 133 6 chrY 15268240 15268398 -9444681 + L1MB7 LINE L1 5986 6163 -21 776 325 100 9 chrY 15268422 15268874 -9444205 - L2 LINE L2 -658 2656 2164 1016 221 62 4 chrY 15268927 15269199 -9443880 + AluJb SINE Alu 1 288 -14 225 349 19 28 chrY 15269212 15269318 -9443761 - L2 LINE L2 -1366 1948 1844 23 33 0 0 chrY 15271968 15271998 -9441081 + AT_rich Low_complexity Low_complexity 1 30 0 1770 169 0 0 chrY 15272677 15272961 -9440118 - AluSg SINE Alu -26 284 1 1323 180 9 0 chrY 15273027 15273249 -9439830 + AluSx SINE Alu 3 226 -86 192 200 0 0 chrY 15273278 15273318 -9439761 + (TA)n Simple_repeat Simple_repeat 1 40 0 228 213 0 0 chrY 15273328 15273389 -9439690 + (CA)n Simple_repeat Simple_repeat 2 62 0 874 249 72 26 chrY 15273389 15273778 -9439301 - L1 LINE L1 -761 6804 6398 516 268 80 0 chrY 15273792 15273930 -9439149 - FAM SINE Alu -29 156 8 4410 233 63 50 chrY 15273937 15275468 -9437611 - L1 LINE L1 -1140 6425 4876 1311 244 118 31 chrY 15275494 15276114 -9436965 - L1 LINE L1 -2998 4567 3894 1008 307 77 40 chrY 15276152 15276363 -9436716 - L1 LINE L1 -4811 2754 2552 1386 195 13 62 chrY 15276363 15276671 -9436408 - AluSq SINE Alu -20 293 1 1008 307 77 40 chrY 15276671 15277281 -9435798 - L1 LINE L1 -5013 2552 1903 416 228 304 25 chrY 15277617 15277704 -9435375 - AluSx SINE Alu -110 202 140 431 62 0 16 chrY 15277704 15277768 -9435311 + (TTG)n Simple_repeat Simple_repeat 1 63 0 416 228 304 25 chrY 15277768 15277838 -9435241 - AluSx SINE Alu -172 140 1 219 380 23 16 chrY 15278329 15278458 -9434621 + L2 LINE L2 2464 2593 -721 805 221 23 6 chrY 15280266 15280438 -9432641 - L1M2 LINE L1 -730 5561 5387 895 175 26 0 chrY 15280453 15280607 -9432472 + AluSg/x SINE Alu 128 285 -27 970 197 3 51 chrY 15280638 15280933 -9432146 - L1M2 LINE L1 -769 5377 5097 1554 210 30 19 chrY 15280958 15281325 -9431754 + L1MA7 LINE L1 5596 5966 -325 573 307 0 0 chrY 15281326 15281492 -9431587 + FRAM SINE Alu 1 166 -10 475 202 95 14 chrY 15281505 15281648 -9431431 + L1MA7 LINE L1 5962 6124 -167 1064 202 9 5 chrY 15281663 15281881 -9431198 + AluSx SINE Alu 4 222 -90 671 214 42 18 chrY 15281903 15282071 -9431008 + L1MA7 LINE L1 6120 6291 0 1238 195 115 4 chrY 15282543 15282804 -9430275 - AluSx SINE Alu -22 290 1 685 256 54 0 chrY 15283244 15283412 -9429667 - FRAM SINE Alu 0 176 1 180 0 0 0 chrY 15333871 15333891 -9379188 + (A)n Simple_repeat Simple_repeat 1 20 0 183 42 0 0 chrY 15334079 15334103 -9378976 + (A)n Simple_repeat Simple_repeat 1 24 0 670 199 102 29 chrY 15334105 15334311 -9378768 + Charlie5 DNA MER1_type 2404 2624 0 1330 218 14 24 chrY 15335290 15335583 -9377496 - AluJo SINE Alu -22 290 1 3488 170 57 5 chrY 15335734 15336345 -9376734 + LTR9B LTR ERV1 2 644 0 813 261 20 45 chrY 15336345 15336776 -9376303 + HUERS-P3b LTR ERV1 1 506 -6912 3225 227 23 39 chrY 15336822 15337612 -9375467 + HUERS-P3b LTR ERV1 764 1540 -5878 238 253 72 0 chrY 15337616 15337699 -9375380 - L1MC4 LINE L1 -1339 6703 6615 324 0 0 0 chrY 15337728 15337764 -9375315 + (TG)n Simple_repeat Simple_repeat 1 36 0 1573 203 0 0 chrY 15337765 15338041 -9375038 - AluSg SINE Alu -34 276 1 6595 150 16 7 chrY 15338042 15339127 -9373952 + HUERS-P3b LTR ERV1 1538 2632 -4786 1860 253 38 2 chrY 15339127 15339554 -9373525 - LTR8 LTR ERV1 -238 453 12 3510 164 58 50 chrY 15339554 15340281 -9372798 + HUERS-P3b LTR ERV1 3062 3794 -3624 * 3528 188 36 22 chrY 15340277 15341487 -9371592 + HUERS-P3b LTR ERV1 3936 5371 -2047 23 0 0 0 chrY 15342421 15342444 -9370635 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chrY 15343085 15343113 -9369966 + AT_rich Low_complexity Low_complexity 1 28 0 4499 112 2 2 chrY 15343358 15343945 -9369134 - LTR14C LTR ERVK 0 587 1 12443 103 30 2 chrY 15343945 15345680 -9367399 - HERVK14C LTR ERVK 0 7417 5635 10168 132 27 1 chrY 15345665 15347197 -9365882 - HERVK14C LTR ERVK -5844 1573 3 * 4340 111 0 30 chrY 15347199 15347801 -9365278 - LTR14C LTR ERVK -3 584 1 272 234 70 65 chrY 15348072 15348273 -9364806 + L1MC4 LINE L1 7840 8041 -1 226 270 104 17 chrY 15348650 15348765 -9364314 + L1ME4a LINE L1 5954 6078 -43 1492 172 65 26 chrY 15348765 15349073 -9364006 + MER33 DNA MER1_type 5 324 0 191 216 0 59 chrY 15349229 15349280 -9363799 + L3b LINE CR1 1286 1333 -250 1456 200 7 23 chrY 15350019 15350319 -9362760 - AluJo SINE Alu -17 295 1 3603 176 16 19 chrY 15350482 15351125 -9361954 + LTR9B LTR ERV1 4 644 0 758 240 21 46 chrY 15351125 15351553 -9361526 + HUERS-P3b LTR ERV1 1 504 -6914 2862 236 19 46 chrY 15351601 15352406 -9360673 + HUERS-P3b LTR ERV1 764 1546 -5872 390 171 0 0 chrY 15352406 15352468 -9360611 + (TA)n Simple_repeat Simple_repeat 2 66 -17 302 0 26 0 chrY 15352468 15352506 -9360573 + (CA)n Simple_repeat Simple_repeat 2 40 0 390 171 0 0 chrY 15352506 15352525 -9360554 + (TA)n Simple_repeat Simple_repeat 65 83 0 1729 178 0 0 chrY 15352534 15352815 -9360264 - AluSg SINE Alu -29 281 1 5986 154 16 10 chrY 15352815 15353912 -9359167 + HUERS-P3b LTR ERV1 1539 2642 -4776 1793 234 31 5 chrY 15353912 15354331 -9358748 - LTR8 LTR ERV1 -250 441 12 2913 172 64 69 chrY 15354331 15354575 -9358504 + HUERS-P3b LTR ERV1 3062 3306 -4112 2317 103 0 10 chrY 15354575 15354885 -9358194 + AluY SINE Alu 1 307 -4 2913 172 64 69 chrY 15354885 15355377 -9357702 + HUERS-P3b LTR ERV1 3306 3794 -3624 2207 194 50 8 chrY 15355373 15355908 -9357171 + HUERS-P3b LTR ERV1 3936 4493 -2925 * 9792 153 40 24 chrY 15355900 15357872 -9355207 + HUERS-P3b LTR ERV1 4691 6694 -724 2104 232 5 0 chrY 15357869 15358317 -9354762 + HUERS-P3 LTR ERV1 8469 8918 -1 * 3348 166 52 3 chrY 15358324 15358938 -9354141 + LTR9B LTR ERV1 1 644 0 341 253 113 41 chrY 15359239 15359433 -9353646 + L1MC/D LINE L1 5564 5771 -2037 505 154 154 0 chrY 15359476 15359586 -9353493 - L1MC3 LINE L1 -1566 6219 6093 834 226 166 33 chrY 15359590 15359958 -9353121 - L1M4 LINE L1 -943 6622 6206 23 0 0 0 chrY 15360276 15360299 -9352780 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chrY 15360481 15360506 -9352573 + AT_rich Low_complexity Low_complexity 1 25 0 926 124 11 17 chrY 15360533 15360711 -9352368 + (TTTC)n Simple_repeat Simple_repeat 4 180 0 1350 263 0 0 chrY 15360719 15361023 -9352056 - AluSx SINE Alu -8 304 1 236 167 37 0 chrY 15361205 15361259 -9351820 + L1P LINE L1 2309 2364 -3782 281 219 7 52 chrY 15361305 15361460 -9351619 - L1M4 LINE L1 -3986 3580 3433 360 158 40 28 chrY 15361569 15361746 -9351333 + (TA)n Simple_repeat Simple_repeat 1 179 0 325 173 69 40 chrY 15361789 15361962 -9351117 + (TA)n Simple_repeat Simple_repeat 2 179 0 232 152 48 32 chrY 15361979 15362104 -9350975 + (TA)n Simple_repeat Simple_repeat 2 128 0 474 311 42 51 chrY 15362120 15362585 -9350494 - L1M4 LINE L1 -4357 3208 2749 207 0 0 0 chrY 15362585 15362608 -9350471 + (TG)n Simple_repeat Simple_repeat 2 24 0 474 311 42 51 chrY 15362608 15362813 -9350266 - L1M4 LINE L1 -4816 2749 2544 342 0 0 0 chrY 15362951 15362989 -9350090 + (TG)n Simple_repeat Simple_repeat 1 38 0 26 30 0 0 chrY 15363017 15363050 -9350029 + AT_rich Low_complexity Low_complexity 1 33 0 453 299 80 26 chrY 15363119 15363430 -9349649 - L1M4 LINE L1 -6660 829 502 261 0 0 0 chrY 15363804 15363833 -9349246 + (TG)n Simple_repeat Simple_repeat 2 30 0 * 270 0 0 0 chrY 15363832 15363862 -9349217 + (TA)n Simple_repeat Simple_repeat 1 30 0 212 220 20 0 chrY 15364582 15364632 -9348447 + (TA)n Simple_repeat Simple_repeat 1 51 0 2091 231 47 65 chrY 15364860 15365803 -9347276 - L1PA16 LINE L1 -48 6118 5192 3354 69 4 11 chrY 15365873 15366324 -9346755 + LTR7 LTR ERV1 1 448 -2 180 231 0 0 chrY 15367266 15367318 -9345761 + (TATG)n Simple_repeat Simple_repeat 1 52 0 204 67 0 0 chrY 15368028 15368058 -9345021 + (CAAAAA)n Simple_repeat Simple_repeat 1 30 0 6525 59 1 0 chrY 15368182 15369014 -9344065 + L1PA4 LINE L1 5320 6152 -3 1635 190 3 38 chrY 15369643 15369959 -9343120 - AluSx SINE Alu -7 305 1 187 310 52 0 chrY 15370181 15370239 -9342840 + MIR SINE MIR 6 66 -196 1395 209 8 0 chrY 15374084 15374347 -9338732 + AluSg1 SINE Alu 1 265 -44 524 181 22 7 chrY 15374355 15374493 -9338586 + (TA)n Simple_repeat Simple_repeat 2 141 0 240 167 0 0 chrY 15374497 15374545 -9338534 + (CA)n Simple_repeat Simple_repeat 1 48 0 1473 233 3 13 chrY 15374552 15374865 -9338214 + AluSg SINE Alu 1 310 0 860 197 65 145 chrY 15375568 15375893 -9337186 + AluSx SINE Alu 6 304 -8 1086 252 126 15 chrY 15377674 15378086 -9334993 + MLT1C LTR MaLR 3 460 -7 189 0 0 0 chrY 15378945 15378966 -9334113 + (T)n Simple_repeat Simple_repeat 1 21 0 1203 221 10 34 chrY 15379378 15379676 -9333403 + AluJb SINE Alu 1 291 -21 436 360 44 13 chrY 15379834 15380062 -9333017 + MIR SINE MIR 18 252 -10 430 250 0 0 chrY 15380457 15380561 -9332518 + MER58B DNA MER1_type 222 325 -16 366 42 0 0 chrY 15380870 15380918 -9332161 + (TG)n Simple_repeat Simple_repeat 2 49 0 613 169 164 33 chrY 15381329 15381512 -9331567 + MER3 DNA MER1_type 3 209 0 1006 227 109 0 chrY 15381536 15381756 -9331323 - AluSx SINE Alu -68 244 1 1260 255 53 49 chrY 15382080 15382574 -9330505 + MLT1D LTR MaLR 10 505 0 227 303 90 11 chrY 15382803 15382892 -9330187 + L2 LINE L2 3169 3264 -8 203 0 37 0 chrY 15383425 15383452 -9329627 + (TG)n Simple_repeat Simple_repeat 2 29 0 323 247 54 21 chrY 15383474 15383567 -9329512 - L1MC4 LINE L1 -1339 6703 6608 277 24 48 0 chrY 15383686 15383728 -9329351 + (TAAAA)n Simple_repeat Simple_repeat 2 45 0 2819 146 4 0 chrY 15383888 15384354 -9328725 - L1PA8 LINE L1 -2 6170 5703 2380 126 17 11 chrY 15384354 15384847 -9328232 + L1P3 LINE L1 5179 5663 -509 306 125 0 0 chrY 15385313 15385361 -9327718 + (T)n Simple_repeat Simple_repeat 1 48 0 445 347 108 17 chrY 15385595 15386013 -9327066 + L3 LINE CR1 527 982 -595 486 252 36 7 chrY 15386287 15386426 -9326653 + MER117 DNA MER1_type 4 146 -51 3693 156 5 0 chrY 15387301 15387885 -9325194 + LTR14C LTR ERVK 1 587 0 11369 124 5 2 chrY 15387885 15389656 -9323423 + HERVK14C LTR ERVK 1 1775 -5642 * 12572 100 4 11 chrY 15389653 15391517 -9321562 + HERVK14C LTR ERVK 1902 3751 -3666 6906 107 12 23 chrY 15391511 15392618 -9320461 + HERVK14C LTR ERVK 6320 7414 -3 * 4262 104 2 2 chrY 15392620 15393207 -9319872 + LTR14C LTR ERVK 1 587 0 693 260 70 0 chrY 15393887 15394087 -9318992 + MER20 DNA MER1_type 3 216 -3 984 244 5 0 chrY 15397023 15397244 -9315835 - L1MC1 LINE L1 -8 6325 6104 1372 216 11 7 chrY 15397331 15397637 -9315442 - AluSx SINE Alu 0 307 1 1055 184 0 0 chrY 15397741 15397909 -9315170 - AluSq SINE Alu -145 168 1 1439 163 19 4 chrY 15397937 15398207 -9314872 - L1PA7 LINE L1 -7 6147 5874 1379 221 14 3 chrY 15398267 15398557 -9314522 - AluSx SINE Alu -19 293 1 2052 126 3 7 chrY 15399532 15399826 -9313253 + AluY SINE Alu 1 293 -18 240 149 0 0 chrY 15400513 15400560 -9312519 + (TTCA)n Simple_repeat Simple_repeat 4 50 0 663 229 120 6 chrY 15400755 15400938 -9312141 + MER3 DNA MER1_type 2 205 -4 1350 263 0 0 chrY 15401030 15401334 -9311745 + AluSx SINE Alu 1 304 -8 999 113 6 17 chrY 15401361 15401538 -9311541 + (GAAA)n Simple_repeat Simple_repeat 4 178 0 25 0 0 0 chrY 15401559 15401584 -9311495 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chrY 15401766 15401789 -9311290 + AT_rich Low_complexity Low_complexity 1 23 0 834 226 166 33 chrY 15402107 15402475 -9310604 + L1M4 LINE L1 4787 5203 -943 505 154 154 0 chrY 15402479 15402589 -9310490 + L1MC3 LINE L1 6093 6219 -1566 341 253 113 41 chrY 15402632 15402826 -9310253 - L1MC1 LINE L1 -2037 5771 5564 3348 166 52 3 chrY 15403127 15403741 -9309338 - LTR9B LTR ERV1 0 644 1 2104 232 5 0 chrY 15403748 15404196 -9308883 - HUERS-P3 LTR ERV1 -1 8918 8469 * 9792 153 40 24 chrY 15404193 15406165 -9306914 - HUERS-P3b LTR ERV1 -724 6694 4691 2207 194 50 8 chrY 15406157 15406692 -9306387 - HUERS-P3b LTR ERV1 -2925 4493 3936 * 2913 172 64 69 chrY 15406688 15407180 -9305899 - HUERS-P3b LTR ERV1 -3624 3794 3306 2317 103 0 10 chrY 15407180 15407490 -9305589 - AluY SINE Alu -4 307 1 2913 172 64 69 chrY 15407490 15407734 -9305345 - HUERS-P3b LTR ERV1 -4112 3306 3062 1793 234 31 5 chrY 15407734 15408153 -9304926 + LTR8 LTR ERV1 12 441 -250 5986 154 16 10 chrY 15408153 15409250 -9303829 - HUERS-P3b LTR ERV1 -4776 2642 1539 1729 178 0 0 chrY 15409250 15409531 -9303548 + AluSg SINE Alu 1 281 -29 390 171 0 0 chrY 15409540 15409559 -9303520 + (TA)n Simple_repeat Simple_repeat 2 20 -63 302 0 26 0 chrY 15409559 15409597 -9303482 + (TG)n Simple_repeat Simple_repeat 2 40 0 390 171 0 0 chrY 15409597 15409659 -9303420 + (TA)n Simple_repeat Simple_repeat 19 83 0 2862 236 19 46 chrY 15409659 15410464 -9302615 - HUERS-P3b LTR ERV1 -5872 1546 764 758 240 21 46 chrY 15410512 15410940 -9302139 - HUERS-P3b LTR ERV1 -6914 504 1 3171 176 16 19 chrY 15410940 15411583 -9301496 - LTR9B LTR ERV1 0 644 4 1480 200 7 23 chrY 15411746 15412046 -9301033 + AluJo SINE Alu 1 295 -17 192 216 0 59 chrY 15412785 15412836 -9300243 - L3b LINE CR1 -250 1333 1286 1332 172 65 26 chrY 15412992 15413300 -9299779 - MER33 DNA MER1_type 0 324 5 400 295 68 42 chrY 15413792 15414029 -9299050 - L1MC4 LINE L1 -1 8041 7799 4055 111 0 30 chrY 15414264 15414866 -9298213 + LTR14C LTR ERVK 1 584 -3 9417 132 27 1 chrY 15414868 15416400 -9296679 + HERVK14C LTR ERVK 3 1573 -5844 * 11504 103 30 2 chrY 15416385 15418120 -9294959 + HERVK14C LTR ERVK 5635 7417 0 4212 112 2 2 chrY 15418120 15418707 -9294372 + LTR14C LTR ERVK 1 587 0 21 36 0 0 chrY 15418952 15418980 -9294099 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chrY 15419621 15419644 -9293435 + AT_rich Low_complexity Low_complexity 1 23 0 3196 175 19 28 chrY 15420578 15421265 -9291814 - HUERS-P3b LTR ERV1 -2047 5371 4691 2030 209 57 6 chrY 15421257 15421788 -9291291 - HUERS-P3b LTR ERV1 -2925 4493 3936 * 3178 164 58 50 chrY 15421784 15422511 -9290568 - HUERS-P3b LTR ERV1 -3624 3794 3062 1674 254 31 2 chrY 15422511 15422925 -9290154 + LTR8 LTR ERV1 12 437 -254 3979 148 14 8 chrY 15422925 15423628 -9289451 - HUERS-P3b LTR ERV1 -4773 2645 1939 180 301 53 80 chrY 15423628 15423741 -9289338 - L2 LINE L2 -2531 783 674 1525 153 18 3 chrY 15423741 15424023 -9289056 - HUERS-P3b LTR ERV1 -5595 1823 1538 1601 203 0 0 chrY 15424024 15424300 -9288779 + AluSg SINE Alu 1 276 -34 324 0 0 0 chrY 15424301 15424337 -9288742 + (CA)n Simple_repeat Simple_repeat 1 36 0 318 254 0 0 chrY 15424339 15424449 -9288630 + (TATATG)n Simple_repeat Simple_repeat 4 113 0 2923 229 23 39 chrY 15424449 15425245 -9287834 - HUERS-P3b LTR ERV1 -5872 1546 764 720 261 20 45 chrY 15425291 15425722 -9287357 - HUERS-P3b LTR ERV1 -6912 506 1 3211 170 57 5 chrY 15425722 15426333 -9286746 - LTR9B LTR ERV1 0 644 2 1367 222 14 24 chrY 15426484 15426777 -9286302 + AluJo SINE Alu 1 290 -22 739 205 74 64 chrY 15427756 15428053 -9285026 - MER33 DNA MER1_type 0 324 25 579 214 58 62 chrY 15428070 15428313 -9284766 - MER33 DNA MER1_type -78 246 5 759 148 0 28 chrY 15428399 15428541 -9284538 + LTR14C LTR ERVK 450 587 0 23 0 0 0 chrY 15429447 15429470 -9283609 + AT_rich Low_complexity Low_complexity 1 23 0 347 384 59 33 chrY 15430394 15430701 -9282378 + L2 LINE L2 2944 3258 -14 1053 269 33 0 chrY 15430911 15431182 -9281897 + AluJb SINE Alu 1 280 -32 1370 204 59 3 chrY 15431381 15431670 -9281409 - AluSq SINE Alu -8 305 1 247 340 113 11 chrY 15432262 15432447 -9280632 - L3 LINE CR1 -1180 397 194 672 224 0 15 chrY 15433041 15433175 -9279904 - FLAM_A SINE Alu -1 132 1 201 288 34 0 chrY 15434392 15434451 -9278628 + L2 LINE L2 3250 3310 -3 22 35 0 0 chrY 15436025 15436054 -9277025 + AT_rich Low_complexity Low_complexity 1 29 0 1279 219 3 71 chrY 15436147 15436343 -9276736 - AluSx SINE Alu -9 303 136 1554 218 0 11 chrY 15436343 15436628 -9276451 - AluSx SINE Alu -30 282 1 1279 219 3 71 chrY 15436628 15436756 -9276323 - AluSx SINE Alu -176 136 1 21 36 0 0 chrY 15437937 15437965 -9275114 + AT_rich Low_complexity Low_complexity 1 28 0 440 277 75 55 chrY 15439235 15439471 -9273608 + MIR SINE MIR 6 256 -6 472 218 21 128 chrY 15440114 15440233 -9272846 - MER46C DNA MER2_type -117 221 140 2133 138 0 3 chrY 15440233 15440545 -9272534 - AluY SINE Alu 0 311 1 472 218 21 128 chrY 15440545 15440668 -9272411 - MER46C DNA MER2_type -198 140 5 1631 202 0 16 chrY 15442457 15442764 -9270315 - AluSx SINE Alu -8 304 3 1401 167 57 144 chrY 15443014 15443590 -9269489 + LTR61 LTR ERV1 70 595 0 1544 245 5 16 chrY 15443599 15443987 -9269092 + HERV3 LTR ERV1 10 393 -8033 * 17289 262 28 28 chrY 15443986 15448788 -9264291 + HERV3 LTR ERV1 299 5099 -3327 3784 103 32 38 chrY 15448789 15449834 -9263245 - MER11A LTR ERVK 0 1266 1 4166 278 50 13 chrY 15449834 15451003 -9262076 + HERV3 LTR ERV1 5095 6306 -2120 515 233 8 15 chrY 15451101 15451234 -9261845 + HERV3 LTR ERV1 8287 8418 -8 1706 200 66 47 chrY 15451244 15451758 -9261321 + LTR61 LTR ERV1 72 595 0 1693 176 32 0 chrY 15451777 15452061 -9261018 - AluSg SINE Alu -17 293 1 201 324 176 18 chrY 15453011 15453181 -9259898 + MIR3 SINE MIR 8 204 -4 216 306 61 10 chrY 15454756 15454854 -9258225 - L2 LINE L2 -7 3306 3204 219 36 0 0 chrY 15456412 15456440 -9256639 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 975 208 67 104 chrY 15459411 15459786 -9253293 + MLT1A1 LTR MaLR 3 363 -2 192 77 0 0 chrY 15461238 15461264 -9251815 + (A)n Simple_repeat Simple_repeat 1 26 0 256 167 9 185 chrY 15464084 15464311 -9248768 - MER53 DNA DNA -1 188 2 413 321 14 37 chrY 15465691 15465906 -9247173 + L1MDa LINE L1 118 327 -6213 44400 179 25 8 chrY 15465966 15474091 -9238988 + HERV3 LTR ERV1 165 8426 0 2598 193 43 17 chrY 15474138 15474678 -9238401 + LTR4 LTR ERV1 43 596 0 1644 181 7 13 chrY 15475301 15475605 -9237474 + AluSc SINE Alu 1 302 -7 250 44 22 22 chrY 15477136 15477181 -9235898 + (CAAAA)n Simple_repeat Simple_repeat 1 45 0 1636 175 3 3 chrY 15479344 15479629 -9233450 - AluY SINE Alu 0 311 27 1402 109 0 0 chrY 15480241 15480433 -9232646 - AluY SINE Alu -119 192 1 246 272 0 33 chrY 15481444 15481536 -9231543 - MIR SINE MIR -49 213 125 1471 186 148 5 chrY 15481697 15482074 -9231005 + MER9 LTR ERVK 81 511 0 678 223 11 17 chrY 15482074 15482249 -9230830 + HERVK9 LTR ERVK 1 174 -5742 * 10723 176 37 49 chrY 15482247 15484859 -9228220 + HERVK9 LTR ERVK 3321 5900 -16 2344 161 82 11 chrY 15484876 15485353 -9227726 + MER9 LTR ERVK 1 511 0 620 285 23 54 chrY 15485533 15485884 -9227195 + L1MDa LINE L1 56 395 -6145 30 0 0 0 chrY 15485884 15485914 -9227165 + AT_rich Low_complexity Low_complexity 1 30 0 2133 122 6 31 chrY 15486051 15486372 -9226707 - AluSp SINE Alu 0 313 1 1140 267 72 50 chrY 15486679 15487493 -9225586 + L1M4 LINE L1 4373 5204 -942 1266 151 79 118 chrY 15487497 15487739 -9225340 + MER52C LTR ERV1 890 1111 -167 2840 187 28 5 chrY 15487739 15488306 -9224773 - LTR22 LTR ERVK 0 580 1 1266 151 79 118 chrY 15488306 15488468 -9224611 + MER52C LTR ERV1 1111 1278 0 1125 290 91 33 chrY 15488491 15489269 -9223810 - L1MDa LINE L1 -5469 1071 35 898 156 23 40 chrY 15489843 15490016 -9223063 - AluSg/x SINE Alu -23 287 118 333 0 0 0 chrY 15490800 15490837 -9222242 + (TG)n Simple_repeat Simple_repeat 2 38 0 1368 226 21 0 chrY 15491289 15491576 -9221503 + AluSx SINE Alu 11 303 -9 195 114 0 0 chrY 15491926 15491961 -9221118 + (TG)n Simple_repeat Simple_repeat 2 36 0 904 253 64 29 chrY 15492077 15492453 -9220626 + MSTD LTR MaLR 1 389 -7 214 186 0 0 chrY 15494850 15494893 -9218186 + A-rich Low_complexity Low_complexity 2 44 0 538 271 85 10 chrY 15494973 15495172 -9217907 + L1MB5 LINE L1 5949 6162 -12 29 0 0 0 chrY 15495393 15495422 -9217657 + AT_rich Low_complexity Low_complexity 1 29 0 25 65 0 0 chrY 15495965 15496011 -9217068 + AT_rich Low_complexity Low_complexity 1 46 0 277 235 88 29 chrY 15496347 15496449 -9216630 + MER67C LTR ERV1 487 594 -116 564 234 10 94 chrY 15496451 15496652 -9216427 - AluJo SINE Alu -117 195 12 422 294 10 5 chrY 15496661 15496787 -9216292 - FLAM_C SINE Alu -10 123 13 30 69 0 0 chrY 15498443 15498501 -9214578 + AT_rich Low_complexity Low_complexity 1 58 0 591 286 39 0 chrY 15498598 15498780 -9214299 + MER2 DNA MER2_type 7 195 -150 1011 184 0 88 chrY 15499143 15499371 -9213708 - AluSq SINE Alu -24 289 82 22 35 0 0 chrY 15500270 15500299 -9212780 + AT_rich Low_complexity Low_complexity 1 29 0 2071 243 8 2 chrY 15500416 15500898 -9212181 + MER1A DNA MER1_type 28 512 -17 2409 17 0 0 chrY 15501069 15501356 -9211723 - L1PA3 LINE L1 -511 5644 5358 4047 36 0 22 chrY 15501356 15501861 -9211218 + L1PA3 LINE L1 5661 6155 0 320 88 18 0 chrY 15502424 15502481 -9210598 + (TG)n Simple_repeat Simple_repeat 1 58 0 449 358 5 14 chrY 15502530 15502737 -9210342 - AluJb SINE Alu -107 205 1 259 164 30 15 chrY 15502830 15502897 -9210182 + (TA)n Simple_repeat Simple_repeat 2 69 0 354 290 0 20 chrY 15503137 15503237 -9209842 - AluJb SINE Alu -121 181 84 28 48 0 0 chrY 15503570 15503612 -9209467 + AT_rich Low_complexity Low_complexity 1 42 0 1108 305 8 37 chrY 15503667 15504096 -9208983 - MER52A LTR ERV1 -462 1293 923 1494 146 8 0 chrY 15504184 15504424 -9208655 + AluSp SINE Alu 66 307 -6 236 145 0 16 chrY 15504437 15504499 -9208580 + (TAAA)n Simple_repeat Simple_repeat 2 62 0 372 239 18 31 chrY 15504606 15504769 -9208310 + (CCCTAA)n Simple_repeat Simple_repeat 1 161 0 189 214 0 27 chrY 15504785 15504897 -9208182 + (CCCTAA)n Simple_repeat Simple_repeat 6 114 0 257 230 0 46 chrY 15504912 15505204 -9207875 + (CCCTAA)n Simple_repeat Simple_repeat 1 278 0 310 242 33 33 chrY 15505264 15505417 -9207662 + (CCCTAA)n Simple_repeat Simple_repeat 5 157 0 181 202 0 34 chrY 15505486 15505575 -9207504 + (CCCTAA)n Simple_repeat Simple_repeat 5 90 0 194 214 0 14 chrY 15505664 15505734 -9207345 + (CCCTAA)n Simple_repeat Simple_repeat 4 72 0 326 172 12 37 chrY 15505906 15506069 -9207010 + (CCCTAA)n Simple_repeat Simple_repeat 6 164 0 289 286 0 29 chrY 15506194 15506369 -9206710 + (CCCTAA)n Simple_repeat Simple_repeat 5 174 0 475 212 11 58 chrY 15506456 15506645 -9206434 + (CCCTAA)n Simple_repeat Simple_repeat 1 180 0 310 140 17 56 chrY 15506705 15506884 -9206195 + (CCCTAA)n Simple_repeat Simple_repeat 3 174 0 456 231 0 38 chrY 15506895 15507055 -9206024 + (CCCTAA)n Simple_repeat Simple_repeat 5 158 0 248 215 23 23 chrY 15507072 15507244 -9205835 + (CCCTAA)n Simple_repeat Simple_repeat 2 173 0 21 0 0 0 chrY 15507370 15507391 -9205688 + AT_rich Low_complexity Low_complexity 1 21 0 256 332 65 16 chrY 15507539 15507616 -9205463 + L1M4 LINE L1 3732 3804 -2342 261 0 0 0 chrY 15507616 15507645 -9205434 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 256 332 65 16 chrY 15507645 15507961 -9205118 + L1M4 LINE L1 3804 4148 -1998 199 109 0 43 chrY 15507963 15508009 -9205070 + (TA)n Simple_repeat Simple_repeat 2 45 0 333 272 0 22 chrY 15508011 15508103 -9204976 - L1MC4 LINE L1 -1339 6703 6614 343 309 44 0 chrY 15508204 15508408 -9204671 + L1M4 LINE L1 4187 4399 -1747 25 31 0 0 chrY 15508937 15508969 -9204110 + AT_rich Low_complexity Low_complexity 1 32 0 2080 87 59 0 chrY 15509233 15509520 -9203559 + AluY SINE Alu 1 304 -7 1075 213 102 4 chrY 15509620 15509874 -9203205 + AluJb SINE Alu 19 297 -15 21 0 0 0 chrY 15510139 15510160 -9202919 + AT_rich Low_complexity Low_complexity 1 21 0 2111 175 24 70 chrY 15510287 15510863 -9202216 + MER4B LTR ERV1 25 721 -45 25 0 0 0 chrY 15511034 15511059 -9202020 + AT_rich Low_complexity Low_complexity 1 25 0 230 271 150 75 chrY 15511915 15512122 -9200957 + L1M4 LINE L1 4306 4496 -1650 1277 213 88 4 chrY 15512122 15512395 -9200684 + AluSx SINE Alu 1 296 -16 230 271 150 75 chrY 15512395 15513004 -9200075 + L1M4 LINE L1 4496 5211 -935 1753 193 0 3 chrY 15513004 15513310 -9199769 + AluSx SINE Alu 1 305 -7 230 271 150 75 chrY 15513310 15513470 -9199609 + L1M4 LINE L1 5211 5357 -789 5907 115 25 12 chrY 15513990 15515321 -9197758 - L1PA8 LINE L1 -2 6485 5141 18247 189 16 28 chrY 15515324 15516873 -9196206 - L1PA8 LINE L1 -1582 4879 3313 1219 243 38 14 chrY 15516873 15517165 -9195914 - AluSx SINE Alu 0 302 4 18247 189 16 28 chrY 15517165 15520515 -9192564 - L1PA8 LINE L1 -3148 3313 6 2302 173 52 27 chrY 15520890 15521370 -9191709 + LTR22B LTR ERVK 1 492 0 318 250 52 29 chrY 15521637 15521773 -9191306 + L1MC3 LINE L1 5880 6018 -1767 2031 136 0 7 chrY 15521901 15522196 -9190883 + AluY SINE Alu 2 294 -17 498 208 0 0 chrY 15522283 15522389 -9190690 - L1MB3 LINE L1 -10 6173 6068 711 192 90 12 chrY 15522392 15522459 -9190620 - L1MB3 LINE L1 -628 5550 5490 230 0 33 0 chrY 15522459 15522489 -9190590 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 711 192 90 12 chrY 15522489 15522588 -9190491 - L1MB3 LINE L1 -688 5490 5371 * 2877 238 69 3 chrY 15522579 15523628 -9189451 + L1MB5 LINE L1 5062 6174 0 2104 248 46 59 chrY 15523786 15524520 -9188559 - MER50 LTR ERV1 0 734 10 317 266 53 26 chrY 15525030 15525143 -9187936 - L1M4 LINE L1 -5569 973 858 189 171 0 0 chrY 15525171 15525206 -9187873 + A-rich Low_complexity Low_complexity 1 35 0 649 281 49 5 chrY 15525354 15525557 -9187522 + AluJb SINE Alu 7 218 -94 427 287 9 9 chrY 15525555 15525670 -9187409 + AluJb SINE Alu 168 282 -30 * 485 292 148 49 chrY 15525707 15526179 -9186900 - L1M4 LINE L1 -5940 602 84 1769 182 0 0 chrY 15526288 15526574 -9186505 - AluSx SINE Alu -24 288 3 29 47 0 0 chrY 15527253 15527296 -9185783 + AT_rich Low_complexity Low_complexity 1 43 0 697 256 54 0 chrY 15528163 15528331 -9184748 + FRAM SINE Alu 1 176 0 1260 195 115 4 chrY 15528771 15529032 -9184047 + AluSx SINE Alu 1 290 -22 627 220 42 18 chrY 15529504 15529672 -9183407 - L1MA7 LINE L1 0 6291 6120 1083 202 9 5 chrY 15529694 15529912 -9183167 - AluSx SINE Alu -90 222 4 477 202 95 14 chrY 15529927 15530070 -9183009 - L1MA7 LINE L1 -167 6124 5962 589 307 0 0 chrY 15530083 15530249 -9182830 - FRAM SINE Alu -10 166 1 1535 210 30 19 chrY 15530250 15530617 -9182462 - L1MA7 LINE L1 -325 5966 5596 957 193 3 51 chrY 15530642 15530937 -9182142 + L1M2 LINE L1 5097 5377 -769 910 175 26 0 chrY 15530968 15531122 -9181957 - AluSg/x SINE Alu -27 285 128 800 221 23 6 chrY 15531137 15531309 -9181770 + L1M2 LINE L1 5387 5561 -730 218 380 23 16 chrY 15533117 15533246 -9179833 - L2 LINE L2 -721 2593 2464 427 228 304 25 chrY 15533737 15533807 -9179272 + AluSx SINE Alu 1 50 -262 431 62 0 16 chrY 15533807 15533871 -9179208 + (CAA)n Simple_repeat Simple_repeat 1 63 0 427 228 304 25 chrY 15533871 15533958 -9179121 + AluSx SINE Alu 50 202 -110 943 301 77 45 chrY 15534294 15534904 -9178175 + L1M1 LINE L1 1903 2547 -5018 1407 195 13 62 chrY 15534904 15535212 -9177867 + AluSq SINE Alu 1 293 -20 943 301 77 45 chrY 15535212 15535423 -9177656 + L1M1 LINE L1 2547 2750 -4815 1257 244 118 31 chrY 15535461 15536081 -9176998 + L1M1 LINE L1 3894 4567 -2998 4301 233 63 50 chrY 15536107 15537638 -9175441 + L1M1 LINE L1 4876 6425 -1140 530 268 80 0 chrY 15537645 15537783 -9175296 + FAM SINE Alu 8 156 -29 835 249 72 26 chrY 15537797 15538186 -9174893 + L1M1 LINE L1 6398 6804 -761 228 213 0 0 chrY 15538186 15538247 -9174832 + (TG)n Simple_repeat Simple_repeat 2 62 0 192 200 0 0 chrY 15538257 15538297 -9174782 + (TA)n Simple_repeat Simple_repeat 1 40 0 1347 180 9 0 chrY 15538326 15538548 -9174531 - AluSx SINE Alu -86 226 3 1805 169 0 0 chrY 15538614 15538898 -9174181 + AluSg SINE Alu 1 284 -26 23 33 0 0 chrY 15539577 15539607 -9173472 + AT_rich Low_complexity Low_complexity 1 30 0 220 349 19 28 chrY 15542257 15542363 -9170716 + L2 LINE L2 1844 1948 -1366 1052 221 62 4 chrY 15542376 15542648 -9170431 - AluJb SINE Alu -14 288 1 783 325 100 9 chrY 15542701 15543153 -9169926 + L2 LINE L2 2164 2656 -658 459 253 133 6 chrY 15543177 15543335 -9169744 - L1MB7 LINE L1 -21 6163 5986 181 209 47 23 chrY 15543606 15543649 -9169430 + L2 LINE L2 3191 3234 -79 480 35 0 0 chrY 15543692 15543750 -9169329 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 1071 218 37 26 chrY 15543773 15543908 -9169171 - AluSx SINE Alu -37 275 143 183 42 0 0 chrY 15543908 15543932 -9169147 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1071 218 37 26 chrY 15543932 15544067 -9169012 - AluSx SINE Alu -169 143 2 1102 206 7 37 chrY 15544632 15544928 -9168151 - L1MB7 LINE L1 -10 6174 5888 263 284 128 9 chrY 15544953 15545062 -9168017 + LTR40b LTR ERVL 89 210 -252 543 242 92 26 chrY 15545341 15545581 -9167498 - L1P5 LINE L1 -520 5631 5376 469 204 23 0 chrY 15545604 15545692 -9167387 + AluSq SINE Alu 118 207 -106 1576 201 16 39 chrY 15545695 15546059 -9167020 + L1PA8A LINE L1 5619 5974 -157 1053 246 96 7 chrY 15546220 15546492 -9166587 - AluSx SINE Alu -11 301 6 459 0 0 0 chrY 15548051 15548102 -9164977 + (CA)n Simple_repeat Simple_repeat 2 52 0 342 0 0 0 chrY 15548101 15548139 -9164940 + (TA)n Simple_repeat Simple_repeat 2 39 0 * 2722 7 0 0 chrY 15548851 15549147 -9163932 - AluYa5 SINE Alu -15 296 1 183 310 69 23 chrY 15549501 15549588 -9163491 + L2 LINE L2 3158 3248 -24 1125 257 21 37 chrY 15550414 15550850 -9162229 + L1MA4 LINE L1 5870 6298 -2 621 288 91 104 chrY 15551334 15552250 -9160829 + MER21-int LTR ERV1 2277 3180 -1011 1540 179 11 7 chrY 15552866 15553146 -9159933 + AluSq SINE Alu 1 281 -32 950 120 5 19 chrY 15553147 15553365 -9159714 + (GAAA)n Simple_repeat Simple_repeat 1 214 0 23 0 0 0 chrY 15553396 15553419 -9159660 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chrY 15554188 15554212 -9158867 + AT_rich Low_complexity Low_complexity 1 24 0 566 28 14 0 chrY 15554485 15554557 -9158522 + (TTTCC)n Simple_repeat Simple_repeat 3 75 0 1047 152 6 0 chrY 15554559 15554723 -9158356 - U1 snRNA snRNA 0 165 1 217 355 118 14 chrY 15555076 15555296 -9157783 - MIR SINE MIR 0 262 20 525 201 7 72 chrY 15555413 15555552 -9157527 - FRAM SINE Alu -43 133 4 194 269 19 0 chrY 15556272 15556324 -9156755 + L2 LINE L2 3212 3264 -8 1233 175 36 0 chrY 15557052 15557315 -9155764 + AluSg/x SINE Alu 77 347 0 309 273 91 57 chrY 15558195 15558459 -9154620 + MER46C DNA MER2_type 27 299 -39 254 290 130 30 chrY 15559295 15559395 -9153684 - MER5B DNA MER1_type -25 153 44 1620 152 16 60 chrY 15559414 15559730 -9153349 + AluSg SINE Alu 1 302 -8 273 98 0 0 chrY 15559860 15559901 -9153178 + (TA)n Simple_repeat Simple_repeat 2 42 0 22 0 0 0 chrY 15559962 15559984 -9153095 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chrY 15560726 15560746 -9152333 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 702 131 0 0 chrY 15560776 15560883 -9152196 + LTR19B LTR ERV1 1 107 -473 1641 183 49 3 chrY 15560884 15561212 -9151867 + LTR19B LTR ERV1 238 580 0 2853 200 50 12 chrY 15561212 15561808 -9151271 + HERVFH19I LTR ERV1 2 620 -7099 553 132 35 126 chrY 15561949 15562123 -9150956 + LTR25-int LTR ERV1 4579 4736 -2260 7369 146 38 74 chrY 15562143 15563646 -9149433 + L1P3 LINE L1 377 1828 -4633 1722 183 0 0 chrY 15563650 15563939 -9149140 - AluSx SINE Alu -23 289 1 1392 260 52 27 chrY 15564165 15564645 -9148434 + MLT1D LTR MaLR 10 501 -4 232 246 72 29 chrY 15564883 15564952 -9148127 + L2 LINE L2 3194 3265 -7 288 0 0 0 chrY 15565456 15565488 -9147591 + (CA)n Simple_repeat Simple_repeat 2 33 0 462 18 0 0 chrY 15565488 15565543 -9147536 + (TA)n Simple_repeat Simple_repeat 2 56 0 760 308 69 78 chrY 15565558 15566239 -9146840 + L3 LINE CR1 620 1294 -283 377 256 16 16 chrY 15566239 15566360 -9146719 + MER117 DNA MER1_type 3 123 -74 1498 181 4 14 chrY 15566999 15567275 -9145804 - AluSq SINE Alu -40 273 1 314 228 70 35 chrY 15568067 15568181 -9144898 + L1MC4 LINE L1 6597 6714 -1328 716 271 48 0 chrY 15568326 15568533 -9144546 + MER20 DNA MER1_type 3 219 0 644 169 0 7 chrY 15570220 15570356 -9142723 + CT-rich Low_complexity Low_complexity 3 137 0 369 0 0 0 chrY 15571137 15571178 -9141901 + (TG)n Simple_repeat Simple_repeat 2 42 0 996 234 14 0 chrY 15571178 15571396 -9141683 - L1MC1 LINE L1 -9 6324 6104 1415 199 25 7 chrY 15571486 15571772 -9141307 - AluSq SINE Alu -12 291 1 938 257 14 14 chrY 15571873 15572157 -9140922 - AluSx SINE Alu -23 289 6 633 262 115 0 chrY 15573451 15573634 -9139445 + MER3 DNA MER1_type 2 205 -4 1254 206 0 0 chrY 15573735 15573968 -9139111 + AluSx SINE Alu 32 264 -48 672 48 0 0 chrY 15574022 15574106 -9138973 + (GGAA)n Simple_repeat Simple_repeat 4 87 0 2543 138 30 45 chrY 15574154 15574647 -9138432 - LTR22B LTR ERVK -2 490 5 1056 220 169 16 chrY 15575212 15575584 -9137495 + L1M4 LINE L1 4775 5203 -943 503 191 211 26 chrY 15575588 15575740 -9137339 + L1MC3 LINE L1 6093 6272 -1513 309 310 85 55 chrY 15576256 15576527 -9136552 - L1MC1 LINE L1 -2493 5549 5271 408 153 133 51 chrY 15576745 15576843 -9136236 + FLAM_C SINE Alu 15 120 -23 264 59 0 0 chrY 15576843 15576877 -9136202 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 333 268 68 63 chrY 15576908 15577098 -9135981 - L1MC4 LINE L1 -12 8030 7840 438 323 90 52 chrY 15579211 15579521 -9133558 + L2 LINE L2 2946 3267 -5 1168 275 25 11 chrY 15579722 15580006 -9133073 + AluJb SINE Alu 1 288 -14 1695 187 10 0 chrY 15580151 15580450 -9132629 - AluSq SINE Alu -11 302 1 1790 173 11 0 chrY 15580579 15580862 -9132217 - AluSg1 SINE Alu -13 296 11 279 308 164 6 chrY 15581385 15581544 -9131535 - L3 LINE CR1 -1195 382 199 186 71 0 0 chrY 15582182 15582210 -9130869 + (T)n Simple_repeat Simple_repeat 1 28 0 540 230 0 0 chrY 15582240 15582340 -9130739 - FLAM_A SINE Alu -21 121 22 1660 176 28 0 chrY 15582485 15582769 -9130310 - AluSq SINE Alu -21 292 1 181 346 0 39 chrY 15583872 15583950 -9129129 + L2 LINE L2 3232 3306 -7 22 35 0 0 chrY 15584076 15584105 -9128974 + AT_rich Low_complexity Low_complexity 1 29 0 188 289 289 0 chrY 15586573 15586701 -9126378 + MIR SINE MIR 82 246 -16 1224 243 3 23 chrY 15587014 15587198 -9125881 - AluSx SINE Alu -6 306 129 1541 219 3 0 chrY 15587198 15587509 -9125570 - AluSx SINE Alu 0 312 1 1224 243 3 23 chrY 15587509 15587633 -9125446 - AluSx SINE Alu -183 129 4 1056 208 5 9 chrY 15588119 15588335 -9124744 - AluSc SINE Alu -94 215 1 243 253 38 38 chrY 15588448 15588527 -9124552 + LTR33 LTR ERVL 75 153 -368 699 246 97 21 chrY 15588953 15589469 -9123610 - L1MC/D LINE L1 -748 5398 5017 5374 211 28 6 chrY 15589530 15589933 -9123146 + L1P3 LINE L1 5 398 -6063 207 0 0 0 chrY 15589933 15589956 -9123123 + (TTG)n Simple_repeat Simple_repeat 2 24 0 5374 211 28 6 chrY 15589956 15590647 -9122432 + L1P3 LINE L1 398 1123 -5338 2004 156 3 23 chrY 15590635 15591019 -9122060 + L1P3 LINE L1 2882 3257 -3204 * 1503 205 8 2 chrY 15591026 15591354 -9121725 - L1MA7 LINE L1 -207 5982 5657 90 19 0 0 chrY 15591906 15592010 -9121069 + AT_rich Low_complexity Low_complexity 1 104 0 475 155 47 2 chrY 15592010 15592524 -9120555 + (TA)n Simple_repeat Simple_repeat 1 537 0 203 152 0 0 chrY 15592544 15592577 -9120502 + (TG)n Simple_repeat Simple_repeat 2 34 0 1827 186 12 9 chrY 15593375 15593719 -9119360 - MLT1A1 LTR MaLR -2 363 19 1858 150 13 20 chrY 15593846 15593978 -9119101 + AluSp SINE Alu 1 132 -181 198 0 0 0 chrY 15593978 15594000 -9119079 + (CAA)n Simple_repeat Simple_repeat 3 24 0 1858 150 13 20 chrY 15594000 15594173 -9118906 + AluSp SINE Alu 132 304 -9 1056 235 17 101 chrY 15594523 15594865 -9118214 + MLT1A2 LTR MaLR 1 305 -69 1364 218 14 17 chrY 15594865 15595158 -9117921 - AluJo SINE Alu -20 292 1 1056 235 17 101 chrY 15595158 15595223 -9117856 + MLT1A2 LTR MaLR 305 374 0 664 313 57 31 chrY 15595509 15595896 -9117183 + MLT2C1 LTR ERVL 1 397 0 1720 157 52 52 chrY 15596081 15596380 -9116699 + THE1B LTR MaLR 2 303 -61 2255 114 0 0 chrY 15596380 15596686 -9116393 - AluY SINE Alu -5 306 1 1720 157 52 52 chrY 15596686 15596749 -9116330 + THE1B LTR MaLR 302 364 0 963 240 73 42 chrY 15596997 15597427 -9115652 + MLT1C LTR MaLR 8 377 -13 228 311 68 0 chrY 15597824 15597927 -9115152 + MIR SINE MIR 84 193 -69 1706 186 0 16 chrY 15598242 15598559 -9114520 - AluJb SINE Alu 0 312 1 223 203 29 0 chrY 15600340 15600409 -9112670 + GA-rich Low_complexity Low_complexity 2 72 0 3579 108 162 101 chrY 15600844 15602273 -9110806 + pTR5 LTR ERV1 742 2433 -5 228 303 139 25 chrY 15602608 15602730 -9110349 + MIR SINE MIR 20 155 -107 1654 186 3 3 chrY 15602756 15603051 -9110028 + AluSx SINE Alu 1 295 -17 1842 272 29 27 chrY 15603431 15604125 -9108954 - L1MCb LINE L1 -1787 4777 4083 1833 281 49 14 chrY 15604133 15604329 -9108750 - L1MCb LINE L1 -2383 4181 3993 1513 215 39 21 chrY 15604329 15604710 -9108369 + MLT1B LTR MaLR 3 390 0 1833 281 49 14 chrY 15604710 15605479 -9107600 - L1MCb LINE L1 -2571 3993 3183 1241 224 75 22 chrY 15605485 15605846 -9107233 - LTR25 LTR ERV1 0 794 415 243 206 143 0 chrY 15605817 15605880 -9107199 - MER51A LTR ERV1 -354 280 209 * 507 177 43 0 chrY 15606024 15606134 -9106945 - MER61E LTR ERV1 -484 85 1 1960 266 55 68 chrY 15606164 15607237 -9105842 - L1MCb LINE L1 -3402 3162 2076 5373 138 20 1 chrY 15607237 15608456 -9104623 + L1PA14 LINE L1 4926 6161 0 1960 266 55 68 chrY 15608456 15609460 -9103619 - L1MCb LINE L1 -4488 2076 972 222 37 0 0 chrY 15609460 15609487 -9103592 + (TTA)n Simple_repeat Simple_repeat 1 27 0 1960 266 55 68 chrY 15609487 15609626 -9103453 - L1MCb LINE L1 -5592 972 833 823 70 27 64 chrY 15609640 15609827 -9103252 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 1638 274 71 42 chrY 15609833 15610636 -9102443 - L1MCb LINE L1 -5219 826 1 234 128 0 0 chrY 15611651 15611690 -9101389 + (TTTTC)n Simple_repeat Simple_repeat 3 41 0 180 77 0 0 chrY 15611711 15611737 -9101342 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 2039 129 0 3 chrY 15613050 15613344 -9099735 + AluSp SINE Alu 9 301 -12 201 138 35 17 chrY 15613521 15613579 -9099500 + (TA)n Simple_repeat Simple_repeat 1 59 0 336 159 34 68 chrY 15613632 15613808 -9099271 + (TTATA)n Simple_repeat Simple_repeat 5 174 0 * 391 156 66 24 chrY 15613686 15613937 -9099142 + (TA)n Simple_repeat Simple_repeat 1 261 0 401 222 72 18 chrY 15613969 15614136 -9098943 + (TATATG)n Simple_repeat Simple_repeat 5 180 0 * 435 221 54 12 chrY 15614056 15614395 -9098684 + (TA)n Simple_repeat Simple_repeat 1 353 0 187 231 45 6 chrY 15614452 15614608 -9098471 + (TA)n Simple_repeat Simple_repeat 2 163 0 41002 47 23 4 chrY 15614731 15620766 -9092313 + L1PA3 LINE L1 2 6155 0 35 41 0 0 chrY 15621028 15621077 -9092002 + AT_rich Low_complexity Low_complexity 1 49 0 605 239 98 52 chrY 15621374 15621700 -9091379 + MLT1C LTR MaLR 5 345 -122 416 252 0 7 chrY 15621702 15621837 -9091242 + (TATATG)n Simple_repeat Simple_repeat 2 135 0 819 323 98 45 chrY 15622212 15622744 -9090335 - L2 LINE L2 -149 3164 2662 252 0 0 0 chrY 15622744 15622772 -9090307 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 819 323 98 45 chrY 15622772 15622884 -9090195 - L2 LINE L2 -651 2662 2557 1509 147 26 96 chrY 15622884 15623196 -9089883 + AluSx SINE Alu 6 295 -17 819 323 98 45 chrY 15623196 15623734 -9089345 - L2 LINE L2 -756 2557 1898 21 0 0 0 chrY 15623796 15623817 -9089262 + AT_rich Low_complexity Low_complexity 1 21 0 210 283 0 29 chrY 15623831 15623914 -9089165 + A-rich Low_complexity Low_complexity 2 134 0 217 287 96 0 chrY 15624567 15624661 -9088418 - MIR SINE MIR -71 137 35 183 280 8 17 chrY 15624780 15624898 -9088181 + GA-rich Low_complexity Low_complexity 1 117 0 227 170 0 19 chrY 15625078 15625131 -9087948 + GA-rich Low_complexity Low_complexity 3 54 0 413 207 96 22 chrY 15625274 15625409 -9087670 + MLT1A2 LTR MaLR 230 374 0 2118 125 0 3 chrY 15627085 15627397 -9085682 + AluY SINE Alu 1 311 0 365 198 12 0 chrY 15627400 15627486 -9085593 + (CATATA)n Simple_repeat Simple_repeat 2 88 0 242 148 37 0 chrY 15627492 15627546 -9085533 - L1MC4 LINE L1 -1339 6703 6648 435 106 7 5 chrY 15627790 15627860 -9085219 + MSTC LTR MaLR 1 58 -370 673 91 0 20 chrY 15627861 15627960 -9085119 - L1P4 LINE L1 -439 5735 5639 915 198 76 11 chrY 15628157 15628507 -9084572 - LOR1a LTR ERV1 0 497 35 1720 179 7 3 chrY 15628509 15628794 -9084285 + AluSx SINE Alu 1 286 -26 55 16 0 0 chrY 15628804 15628866 -9084213 + AT_rich Low_complexity Low_complexity 1 62 0 269 130 11 54 chrY 15628869 15628961 -9084118 + A-rich Low_complexity Low_complexity 2 89 0 280 152 0 0 chrY 15628972 15629018 -9084061 - LOR1a LTR ERV1 -451 46 1 1327 144 4 8 chrY 15629594 15629837 -9083242 + L1MA2 LINE L1 6057 6298 -6 3211 209 15 11 chrY 15630505 15631240 -9081839 - L1P LINE L1 -1306 4840 4103 5844 113 14 0 chrY 15631242 15632501 -9080578 + L1PA13 LINE L1 4891 6163 0 231 36 0 0 chrY 15632667 15632695 -9080384 + (CA)n Simple_repeat Simple_repeat 2 29 0 880 255 21 108 chrY 15632859 15633231 -9079848 - LTR40b LTR ERVL 0 462 123 737 274 42 11 chrY 15633762 15633952 -9079127 - MER8 DNA MER2_type -36 203 8 41 78 0 0 chrY 15634902 15634992 -9078087 + AT_rich Low_complexity Low_complexity 1 90 0 329 313 111 3 chrY 15635043 15635290 -9077789 + L1ME LINE L1 5397 5675 -446 189 178 0 0 chrY 15635708 15635753 -9077326 + (TG)n Simple_repeat Simple_repeat 2 46 0 5738 111 29 2 chrY 15635901 15637104 -9075975 + L1PA7 LINE L1 4584 5826 -328 1615 112 27 0 chrY 15637104 15637158 -9075921 + AluSp SINE Alu 68 119 -194 369 0 0 0 chrY 15637158 15637199 -9075880 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 1615 112 27 0 chrY 15637199 15637367 -9075712 + AluSp SINE Alu 119 296 -17 5738 111 29 2 chrY 15637367 15637703 -9075376 + L1PA7 LINE L1 5826 6152 -2 354 236 40 23 chrY 15637745 15637919 -9075160 + (TA)n Simple_repeat Simple_repeat 1 177 0 558 200 0 32 chrY 15637975 15638160 -9074919 + (TA)n Simple_repeat Simple_repeat 2 180 0 1607 154 97 10 chrY 15638192 15638489 -9074590 + MER4B LTR ERV1 1 323 -287 381 111 111 14 chrY 15638489 15638561 -9074518 - MADE1 DNA Mariner -1 79 1 * 1704 117 10 55 chrY 15638561 15638865 -9074214 + MER4B LTR ERV1 321 610 0 1588 181 53 0 chrY 15640233 15640515 -9072564 + AluSq SINE Alu 11 307 -6 754 202 16 44 chrY 15640731 15640914 -9072165 + MLT1C LTR MaLR 1 178 -289 1465 201 42 0 chrY 15640916 15641205 -9071874 + AluJo SINE Alu 1 301 -11 758 183 12 8 chrY 15641205 15641459 -9071620 + GA-rich Low_complexity Low_complexity 1 255 0 522 273 75 5 chrY 15641561 15641748 -9071331 + MLT1C LTR MaLR 268 467 0 1300 196 59 35 chrY 15641859 15642145 -9070934 + AluJb SINE Alu 3 295 -17 309 220 0 17 chrY 15642201 15642260 -9070819 + AluJ/monomer SINE Alu 235 292 -8 329 311 0 0 chrY 15643261 15643351 -9069728 + L1MC4 LINE L1 6614 6703 -1339 2079 113 3 3 chrY 15643384 15643676 -9069403 - AluY SINE Alu -19 292 1 216 0 0 0 chrY 15643764 15643788 -9069291 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 264 26 0 0 chrY 15644707 15644746 -9068333 + AluY SINE Alu 264 302 0 216 0 0 0 chrY 15645083 15645107 -9067972 + (A)n Simple_repeat Simple_repeat 1 24 0 2734 155 31 26 chrY 15645816 15646359 -9066720 + L1PA15 LINE L1 5620 6165 0 710 261 131 60 chrY 15646520 15646872 -9066207 - MLT1C LTR MaLR -90 377 1 1276 241 10 20 chrY 15647368 15647475 -9065604 - AluJo SINE Alu -21 291 184 3568 119 2 4 chrY 15647475 15647987 -9065092 + MER9 LTR ERVK 1 511 0 1276 241 10 20 chrY 15647987 15648173 -9064906 - AluJo SINE Alu -128 184 1 1675 174 7 0 chrY 15648934 15649210 -9063869 + AluSx SINE Alu 2 279 -33 22 0 0 0 chrY 15649214 15649236 -9063843 + AT_rich Low_complexity Low_complexity 1 22 0 280 395 25 10 chrY 15649373 15649573 -9063506 - MIR SINE MIR -54 208 6 2121 122 3 0 chrY 15649722 15650017 -9063062 + AluSg SINE Alu 1 296 -14 245 51 26 0 chrY 15650359 15650398 -9062681 + (TTTA)n Simple_repeat Simple_repeat 4 43 0 1697 184 0 0 chrY 15650399 15650666 -9062413 - AluJo SINE Alu -32 280 14 1332 287 39 53 chrY 15650679 15651127 -9061952 + L1M4 LINE L1 3980 4432 -1714 1902 159 30 0 chrY 15651127 15651429 -9061650 - AluSx SINE Alu -1 311 1 1332 287 39 53 chrY 15651429 15651516 -9061563 + L1M4 LINE L1 4432 4519 -1627 2614 68 3 0 chrY 15651516 15651853 -9061226 + L1PA6 LINE L1 5815 6152 -2 1332 287 39 53 chrY 15651853 15652305 -9060774 + L1M4 LINE L1 4519 4955 -1191 1593 167 80 0 chrY 15652358 15652650 -9060429 - AluSx SINE Alu 0 315 3 668 183 0 51 chrY 15653541 15653678 -9059401 - FLAM_A SINE Alu -2 131 2 195 129 0 0 chrY 15653678 15653709 -9059370 + (A)n Simple_repeat Simple_repeat 1 31 0 25 31 0 0 chrY 15653916 15653948 -9059131 + AT_rich Low_complexity Low_complexity 1 32 0 28 29 0 0 chrY 15654335 15654370 -9058709 + AT_rich Low_complexity Low_complexity 1 35 0 255 229 25 0 chrY 15654730 15654848 -9058231 + (TA)n Simple_repeat Simple_repeat 1 121 0 239 171 66 13 chrY 15654863 15654939 -9058140 + (TA)n Simple_repeat Simple_repeat 1 80 0 22 0 0 0 chrY 15654970 15654992 -9058087 + AT_rich Low_complexity Low_complexity 1 22 0 558 216 52 0 chrY 15654992 15655108 -9057971 + FLAM_C SINE Alu 1 122 -21 218 189 0 38 chrY 15655112 15655128 -9057951 + (TAAA)n Simple_repeat Simple_repeat 3 18 -35 1853 150 26 10 chrY 15655128 15655435 -9057644 + AluSx SINE Alu 1 312 0 218 189 0 38 chrY 15655435 15655471 -9057608 + (TAAA)n Simple_repeat Simple_repeat 18 53 0 204 214 10 78 chrY 15655479 15655540 -9057539 + (TATAA)n Simple_repeat Simple_repeat 1 65 -114 1829 149 21 0 chrY 15655540 15655828 -9057251 - AluSp SINE Alu -9 304 11 204 214 10 78 chrY 15655828 15655921 -9057158 + (TATAA)n Simple_repeat Simple_repeat 65 142 -37 619 80 0 0 chrY 15655921 15656009 -9057070 + L1PA8 LINE L1 6083 6170 -2 204 214 10 78 chrY 15656009 15656045 -9057034 + (TATAA)n Simple_repeat Simple_repeat 142 179 0 * 349 235 22 40 chrY 15656015 15656346 -9056733 + (TTATA)n Simple_repeat Simple_repeat 1 324 0 510 161 12 0 chrY 15657098 15657179 -9055900 - AluSc SINE Alu -28 281 200 693 215 7 0 chrY 15657594 15657743 -9055336 - L1PB4 LINE L1 -1 6155 6006 2481 170 38 4 chrY 15658023 15658524 -9054555 - L1PB4 LINE L1 -1 6155 5638 2248 119 0 0 chrY 15658687 15658982 -9054097 - AluSc SINE Alu -14 295 1 1772 174 3 3 chrY 15659264 15659558 -9053521 + AluSc SINE Alu 6 299 -10 234 88 0 0 chrY 15659647 15659681 -9053398 - MLT2D LTR ERVL -7 407 374 1694 206 0 25 chrY 15659692 15660012 -9053067 + AluSx SINE Alu 1 312 0 301 104 58 45 chrY 15660024 15660178 -9052901 + (TAGA)n Simple_repeat Simple_repeat 3 158 0 1287 244 83 37 chrY 15660178 15660670 -9052409 - MLT2B3 LTR ERVL -39 515 1 1294 237 29 7 chrY 15660968 15661247 -9051832 + AluJb SINE Alu 1 285 -27 1630 209 0 16 chrY 15661939 15662255 -9050824 - AluJo SINE Alu 0 312 2 1860 167 101 37 chrY 15662669 15663077 -9050002 + Tigger2 DNA MER2_type 1 2718 0 1599 153 0 52 chrY 15663265 15663552 -9049527 + AluJo SINE Alu 2 273 -39 333 100 0 0 chrY 15663553 15663603 -9049476 + (GA)n Simple_repeat Simple_repeat 1 50 0 267 31 0 0 chrY 15663632 15663677 -9049402 + (GGAA)n Simple_repeat Simple_repeat 1 77 0 267 31 0 0 chrY 15663677 15663709 -9049370 + (GGAA)n Simple_repeat Simple_repeat 4 35 0 1836 169 0 20 chrY 15663738 15664040 -9049039 - AluSg SINE Alu -14 296 1 1600 159 64 27 chrY 15664308 15664603 -9048476 - AluSx SINE Alu -6 306 1 29 47 0 0 chrY 15664927 15664970 -9048109 + AT_rich Low_complexity Low_complexity 1 43 0 587 253 54 0 chrY 15665297 15665483 -9047596 - L1MB1 LINE L1 -77 6112 5917 367 136 23 45 chrY 15665493 15665581 -9047498 - MER21A LTR ERV1 -9 922 837 1264 56 0 0 chrY 15665592 15665754 -9047325 - MER4E LTR ERV1 -8 758 597 981 205 96 92 chrY 15665756 15666204 -9046875 - LTR7 LTR ERV1 0 450 1 738 190 17 29 chrY 15666204 15666378 -9046701 - HERVH LTR ERV1 0 7713 7542 * 2622 143 11 0 chrY 15666374 15666820 -9046259 - HERVH LTR ERV1 -106 7607 7157 * 12430 130 16 3 chrY 15666813 15669191 -9043888 - HERVH LTR ERV1 -1697 6016 3672 990 228 9 18 chrY 15669227 15669446 -9043633 - MER21A LTR ERV1 -166 765 549 394 147 110 0 chrY 15669447 15669556 -9043523 + HERVH LTR ERV1 5850 5970 -1743 2818 129 40 13 chrY 15669595 15670178 -9042901 + MER4B LTR ERV1 5 779 0 671 176 21 20 chrY 15670178 15670497 -9042582 - MER21B LTR ERV1 -451 412 5 426 63 2 6 chrY 15670512 15670576 -9042503 + L1MB1 LINE L1 6108 6172 -8 3731 171 40 25 chrY 15670579 15671337 -9041742 - MER4E LTR ERV1 0 779 11 315 0 0 0 chrY 15671357 15671392 -9041687 + (CA)n Simple_repeat Simple_repeat 2 36 0 621 175 81 6 chrY 15671406 15671474 -9041605 + L1MA10 LINE L1 6163 6224 -110 2131 129 204 65 chrY 15671474 15671776 -9041303 + LTR43 LTR ERV1 1 260 -342 1707 170 10 7 chrY 15671776 15672064 -9041015 - AluSg SINE Alu -21 289 1 2131 129 204 65 chrY 15672064 15672286 -9040793 + LTR43 LTR ERV1 260 598 -4 621 175 81 6 chrY 15672286 15672377 -9040702 + L1MA10 LINE L1 6224 6334 0 22 0 0 0 chrY 15673140 15673162 -9039917 + AT_rich Low_complexity Low_complexity 1 22 0 562 228 23 101 chrY 15674069 15674329 -9038750 + MLT1E LTR MaLR 207 427 -166 1497 200 7 3 chrY 15674332 15674617 -9038462 + AluJb SINE Alu 1 286 -26 2022 138 0 0 chrY 15674641 15674931 -9038148 + AluSg SINE Alu 1 290 -20 373 84 28 0 chrY 15674937 15675008 -9038071 + (CATAA)n Simple_repeat Simple_repeat 3 75 0 2109 149 9 64 chrY 15675564 15676000 -9037079 + L1PA13 LINE L1 5733 6144 -19 1718 186 0 3 chrY 15676276 15676577 -9036502 - AluJb SINE Alu -12 300 1 405 0 0 0 chrY 15677105 15677150 -9035929 + (CA)n Simple_repeat Simple_repeat 2 46 0 249 323 42 21 chrY 15677222 15677318 -9035761 + MIR SINE MIR 16 113 -95 1574 191 7 40 chrY 15677371 15677670 -9035409 + AluJb SINE Alu 1 289 -23 5951 133 12 145 chrY 15677680 15679317 -9033762 + L1PA7 LINE L1 878 2296 -3850 4462 155 44 16 chrY 15679317 15680284 -9032795 + MER11B LTR ERVK 1 1162 -104 15664 129 11 11 chrY 15680284 15681784 -9031295 + L1PA7 LINE L1 2716 4215 -1939 1665 128 13 74 chrY 15681784 15682096 -9030983 + AluSc SINE Alu 10 302 -7 15664 129 11 11 chrY 15682096 15682912 -9030167 + L1PA7 LINE L1 4215 5030 -1124 1716 151 89 0 chrY 15682912 15683183 -9029896 + AluSc SINE Alu 1 295 -14 15664 129 11 11 chrY 15683183 15683562 -9029517 + L1PA7 LINE L1 5030 5408 -746 3504 108 6 6 chrY 15683562 15684073 -9029006 - MER9 LTR ERVK 0 511 1 15664 129 11 11 chrY 15684073 15684799 -9028280 + L1PA7 LINE L1 5407 6154 0 27 29 0 0 chrY 15684954 15684988 -9028091 + AT_rich Low_complexity Low_complexity 1 34 0 1084 268 92 32 chrY 15685229 15685730 -9027349 + MLT1H LTR MaLR 8 538 -11 3170 152 42 65 chrY 15686175 15686532 -9026547 + L1PB4 LINE L1 5402 5766 -390 193 29 29 29 chrY 15686532 15686567 -9026512 + (TA)n Simple_repeat Simple_repeat 2 36 0 3170 152 42 65 chrY 15686567 15686949 -9026130 + L1PB4 LINE L1 5766 6125 -31 1584 156 55 7 chrY 15686949 15687224 -9025855 + AluSx SINE Alu 13 300 -12 3170 152 42 65 chrY 15687224 15687252 -9025827 + L1PB4 LINE L1 6125 6152 -4 1285 206 34 44 chrY 15687759 15688055 -9025024 - AluJo SINE Alu -19 293 1 183 300 210 25 chrY 15688149 15688349 -9024730 - L3 LINE CR1 -11 1566 1330 366 360 34 11 chrY 15688742 15688917 -9024162 - MER5A DNA MER1_type -10 179 1 1321 177 55 103 chrY 15688969 15689280 -9023799 - AluJb SINE Alu -6 296 1 1207 246 39 11 chrY 15689436 15689534 -9023545 + AluJo SINE Alu 23 117 -195 494 0 33 0 chrY 15689534 15689595 -9023484 + (TAAA)n Simple_repeat Simple_repeat 2 64 0 1207 246 39 11 chrY 15689595 15689776 -9023303 + AluJo SINE Alu 117 310 -2 1936 159 0 0 chrY 15690968 15691258 -9021821 - AluSx SINE Alu -20 292 3 1565 181 47 0 chrY 15691628 15691904 -9021175 - AluSx SINE Alu -12 300 12 1799 180 0 19 chrY 15692215 15692531 -9020548 + AluJb SINE Alu 1 310 -2 1312 211 7 21 chrY 15692983 15693295 -9019784 + AluJo SINE Alu 1 308 0 1760 149 7 46 chrY 15693703 15693872 -9019207 - AluSx SINE Alu -17 295 142 1999 96 0 7 chrY 15693872 15694142 -9018937 - AluY SINE Alu -8 303 36 1760 149 7 46 chrY 15694142 15694274 -9018805 - AluSx SINE Alu -170 142 6 1478 204 7 7 chrY 15694806 15695095 -9017984 - AluJo SINE Alu -11 301 13 1669 204 0 7 chrY 15695495 15695799 -9017280 - AluJo SINE Alu -10 302 1 212 293 150 30 chrY 15696371 15696504 -9016575 + L2 LINE L2 3130 3278 -35 22 35 0 0 chrY 15696504 15696533 -9016546 + AT_rich Low_complexity Low_complexity 1 29 0 1811 159 11 0 chrY 15696582 15696865 -9016214 - AluSg SINE Alu -19 291 6 189 0 0 0 chrY 15697311 15697332 -9015747 + (CA)n Simple_repeat Simple_repeat 2 22 0 1880 139 33 3 chrY 15697406 15697708 -9015371 + AluSx SINE Alu 1 311 -1 211 238 0 0 chrY 15697715 15697757 -9015322 + A-rich Low_complexity Low_complexity 1 42 0 844 229 4 71 chrY 15697757 15698010 -9015069 - MER67D LTR ERV1 -204 310 75 1847 172 19 61 chrY 15698012 15698227 -9014852 + L1MA4 LINE L1 5847 6070 -230 1547 177 0 0 chrY 15698227 15698476 -9014603 - AluJo SINE Alu -17 295 47 1847 172 19 61 chrY 15698476 15698732 -9014347 + L1MA4 LINE L1 6070 6298 -2 264 183 50 0 chrY 15698748 15698808 -9014271 - MER67D LTR ERV1 -451 63 1 2179 155 17 8 chrY 15698848 15699209 -9013870 + THE1B LTR MaLR 1 364 0 1602 184 33 7 chrY 15699268 15699572 -9013507 - AluJb SINE Alu 0 312 1 2018 139 0 3 chrY 15699801 15700096 -9012983 - AluY SINE Alu -15 296 3 26 30 0 0 chrY 15700106 15700139 -9012940 + AT_rich Low_complexity Low_complexity 1 33 0 251 256 13 0 chrY 15700140 15700154 -9012925 + (TCTA)n Simple_repeat Simple_repeat 2 14 -66 2051 130 3 0 chrY 15700154 15700439 -9012640 - AluSc SINE Alu -23 286 1 251 256 13 0 chrY 15700439 15700502 -9012577 + (TCTA)n Simple_repeat Simple_repeat 14 80 0 231 364 42 8 chrY 15700668 15700786 -9012293 + MIR3 SINE MIR 83 204 -4 2651 194 33 20 chrY 15701294 15701496 -9011583 + L1PB4 LINE L1 5482 5680 -476 1769 169 10 17 chrY 15701496 15701797 -9011282 + AluSq SINE Alu 1 299 -14 2651 194 33 20 chrY 15701797 15702228 -9010851 + L1PB4 LINE L1 5680 6123 -33 2100 130 3 0 chrY 15702245 15702538 -9010541 - AluSc SINE Alu -15 294 1 1978 160 0 0 chrY 15702830 15703130 -9009949 - AluSq SINE Alu -13 300 1 1373 229 10 10 chrY 15703399 15703687 -9009392 + AluJo SINE Alu 1 288 -14 1211 234 4 8 chrY 15703452 15703709 -9009370 + AluJo SINE Alu 55 310 -2 393 179 0 0 chrY 15703731 15703815 -9009264 + GA-rich Low_complexity Low_complexity 2 85 0 551 268 22 11 chrY 15704086 15704265 -9008814 - MLT1C LTR MaLR -1 466 286 306 167 76 0 chrY 15704263 15704329 -9008750 + AluJ/FRAM SINE Alu 218 288 -14 * 215 150 25 0 chrY 15704358 15704398 -9008681 + GA-rich Low_complexity Low_complexity 1 41 0 657 266 89 58 chrY 15704588 15705016 -9008063 + LTR8A LTR ERV1 287 727 0 320 264 54 18 chrY 15705052 15705219 -9007860 - HAL1 LINE L1 -295 2212 2040 1760 153 58 37 chrY 15705222 15705516 -9007563 - AluSq SINE Alu -13 300 1 922 200 0 23 chrY 15705591 15705766 -9007313 - AluSx SINE Alu -141 171 1 206 61 0 30 chrY 15707241 15707252 -9005827 + (GAAA)n Simple_repeat Simple_repeat 2 12 -21 1762 169 16 22 chrY 15707252 15707566 -9005513 + AluSx SINE Alu 1 312 0 206 61 0 30 chrY 15707566 15707587 -9005492 + (GAAA)n Simple_repeat Simple_repeat 12 33 0 1738 144 0 22 chrY 15707676 15707947 -9005132 - AluSc SINE Alu -44 265 1 1531 235 10 0 chrY 15708073 15708375 -9004704 - AluJb SINE Alu -7 305 1 430 46 31 0 chrY 15708529 15708594 -9004485 - AluY SINE Alu -3 308 242 2743 188 45 61 chrY 15708597 15709346 -9003733 + Tigger2 DNA MER2_type 8 744 -1974 780 237 48 33 chrY 15709370 15709640 -9003439 + Tigger2 DNA MER2_type 2435 2708 -10 4000 79 12 1 chrY 15710461 15711460 -9001619 + L1PA7 LINE L1 4797 5803 -351 2177 107 7 0 chrY 15712168 15712468 -9000611 + AluSx SINE Alu 1 302 -10 2514 91 0 3 chrY 15714006 15714356 -8998723 + L1PA7 LINE L1 5790 6138 -16 2094 125 4 0 chrY 15714550 15714830 -8998249 + AluSc SINE Alu 5 285 -24 1738 155 4 4 chrY 15715772 15716043 -8997036 - AluSx SINE Alu -5 307 37 12331 294 29 41 chrY 15717102 15723069 -8990010 + HERV3 LTR ERV1 2125 8020 -715 1771 281 30 46 chrY 15723094 15723806 -8989273 + HERV3 LTR ERV1 7721 8420 -6 467 231 107 61 chrY 15723903 15724312 -8988767 + LTR30 LTR ERV1 241 596 0 360 286 50 0 chrY 15724431 15724571 -8988508 - L1MA10 LINE L1 -8 6326 6180 1730 187 10 3 chrY 15725619 15725746 -8987333 + AluSx SINE Alu 1 126 -186 240 35 0 0 chrY 15725746 15725775 -8987304 + (CAAAA)n Simple_repeat Simple_repeat 5 33 0 1730 187 10 3 chrY 15725775 15725952 -8987127 + AluSx SINE Alu 126 307 -5 21 0 0 0 chrY 15726023 15726044 -8987035 + AT_rich Low_complexity Low_complexity 1 21 0 2123 132 0 0 chrY 15726230 15726533 -8986546 - AluSx SINE Alu -9 303 1 1158 289 135 33 chrY 15726874 15729161 -8983918 + L1MC4a LINE L1 107 2599 -3616 9336 29 0 2 chrY 15729181 15730363 -8982716 - L1PA2 LINE L1 -755 5391 4213 6528 16 3 9 chrY 15730363 15731124 -8981955 + L1PA2 LINE L1 5395 6155 0 1890 263 134 14 chrY 15731138 15732418 -8980661 + L1MC4a LINE L1 2627 4060 -2155 866 215 35 27 chrY 15732436 15732697 -8980382 + L1MC4a LINE L1 5411 5673 -638 1419 220 26 20 chrY 15733344 15733649 -8979430 + AluJo SINE Alu 1 307 -5 231 204 0 0 chrY 15733696 15733745 -8979334 + GA-rich Low_complexity Low_complexity 3 51 0 1993 112 0 0 chrY 15734465 15734723 -8978356 + AluSg SINE Alu 50 307 -3 464 304 71 49 chrY 15734849 15735214 -8977865 + L1MC4a LINE L1 5664 6036 -1841 323 337 6 30 chrY 15735239 15735408 -8977671 + (TG)n Simple_repeat Simple_repeat 2 166 0 260 376 0 0 chrY 15735435 15735592 -8977487 + (TG)n Simple_repeat Simple_repeat 2 158 0 1722 162 50 0 chrY 15735723 15736001 -8977078 + AluSq SINE Alu 3 294 -19 216 97 0 0 chrY 15736003 15736034 -8977045 + (TA)n Simple_repeat Simple_repeat 1 31 0 1562 212 20 3 chrY 15736158 15736450 -8976629 - AluJo SINE Alu -3 309 13 26 0 0 0 chrY 15736468 15736494 -8976585 + AT_rich Low_complexity Low_complexity 1 26 0 21 89 0 0 chrY 15737245 15737301 -8975778 + AT_rich Low_complexity Low_complexity 1 56 0 368 263 24 62 chrY 15737396 15737632 -8975447 - L1MC5 LINE L1 -1131 6677 6476 265 259 37 19 chrY 15737826 15737934 -8975145 - L1MA10 LINE L1 -8 6326 6217 1800 254 54 7 chrY 15738250 15738826 -8974253 - Tigger6 DNA MER2_type -3 1594 992 355 146 18 0 chrY 15738852 15738907 -8974172 + AluJ/FRAM SINE Alu 228 283 -19 517 268 88 50 chrY 15738910 15739351 -8973728 + L1MD2 LINE L1 2258 2715 -3431 236 229 97 69 chrY 15739346 15739452 -8973627 + L1MD2 LINE L1 3504 3617 -2529 * 1458 217 0 43 chrY 15739452 15739775 -8973304 + AluJo SINE Alu 1 309 -3 236 229 97 69 chrY 15739775 15739812 -8973267 + L1MD2 LINE L1 3617 3651 -2495 605 131 30 10 chrY 15739821 15739920 -8973159 - U6 snRNA snRNA -6 101 1 596 273 45 17 chrY 15739922 15740211 -8972868 + L1MD2 LINE L1 3639 3935 -2211 201 176 0 0 chrY 15740265 15740299 -8972780 + (TA)n Simple_repeat Simple_repeat 1 34 0 1288 283 69 26 chrY 15740314 15741154 -8971925 + L1MD2 LINE L1 4288 5163 -983 1737 208 87 105 chrY 15741182 15741344 -8971735 + L1MD2 LINE L1 5383 5546 -696 2400 96 0 0 chrY 15741344 15741647 -8971432 - AluSx SINE Alu -9 303 1 1737 208 87 105 chrY 15741647 15742360 -8970719 + L1MD2 LINE L1 5546 6242 0 28 0 0 0 chrY 15742636 15742664 -8970415 + AT_rich Low_complexity Low_complexity 1 28 0 1238 224 23 20 chrY 15742911 15743224 -8969855 + L1M4 LINE L1 2466 2785 -3361 1955 145 10 0 chrY 15743224 15743538 -8969541 + AluSx SINE Alu 1 317 0 1238 224 23 20 chrY 15743538 15743619 -8969460 + L1M4 LINE L1 2785 2864 -3282 1344 215 3 46 chrY 15743655 15743939 -8969140 + AluJo SINE Alu 11 282 -30 22 0 0 0 chrY 15743940 15743962 -8969117 + AT_rich Low_complexity Low_complexity 1 22 0 2167 263 42 18 chrY 15743971 15744866 -8968213 + L1M4 LINE L1 2895 3811 -2335 897 296 85 10 chrY 15745192 15745604 -8967475 - MLT1J1 LTR MaLR -3 443 1 298 325 133 13 chrY 15745930 15746081 -8966998 - MIR3 SINE MIR -5 203 35 4437 146 70 5 chrY 15746130 15747040 -8966039 - L1PA3 LINE L1 -4 6151 5183 1826 174 20 0 chrY 15747193 15747492 -8965587 - AluSx SINE Alu -7 305 1 192 226 323 11 chrY 15747573 15747666 -8965413 + L2 LINE L2 3192 3313 0 1860 126 11 0 chrY 15748369 15748638 -8964441 + AluSx SINE Alu 34 305 -7 1580 210 7 0 chrY 15748767 15749058 -8964021 + AluJb SINE Alu 1 293 -19 275 276 160 31 chrY 15749646 15750102 -8962977 + L1M4 LINE L1 4418 4932 -1214 364 294 119 23 chrY 15750464 15750949 -8962130 + L1M1 LINE L1 5259 5797 -391 1119 252 73 9 chrY 15751025 15751477 -8961602 - L1M4 LINE L1 -1252 4894 4414 1254 234 54 22 chrY 15751480 15751758 -8961321 - AluJo SINE Alu -25 287 1 1176 222 89 14 chrY 15752015 15752659 -8960420 - L1MC/D LINE L1 -554 5688 4998 489 291 83 19 chrY 15752732 15753093 -8959986 - L1MC/D LINE L1 -1313 4833 4450 365 323 23 17 chrY 15753101 15753318 -8959761 - L1MC/D LINE L1 -1737 4409 4191 1053 152 0 6 chrY 15753320 15753485 -8959594 - AluSg/x SINE Alu -14 296 133 1756 274 54 9 chrY 15753493 15753782 -8959297 - L1MC/D LINE L1 -1949 4197 3922 249 33 0 0 chrY 15753782 15753812 -8959267 + (TATG)n Simple_repeat Simple_repeat 1 30 0 1756 274 54 9 chrY 15753812 15754299 -8958780 - L1MC/D LINE L1 -2224 3922 3386 905 286 105 18 chrY 15754312 15754554 -8958525 + L1MEc LINE L1 815 1035 -5361 2015 122 42 68 chrY 15754554 15754939 -8958140 + THE1C LTR MaLR 1 375 0 905 286 105 18 chrY 15754939 15755305 -8957774 + L1MEc LINE L1 1035 1476 -4920 285 257 84 39 chrY 15755277 15755456 -8957623 + L1M4 LINE L1 4491 4677 -1538 * 30389 48 36 2 chrY 15755464 15759282 -8953797 + L1P LINE L1 6 3953 -2193 1044 32 0 0 chrY 15759282 15759393 -8953686 + L1PA2 LINE L1 6032 6155 0 580 264 15 10 chrY 15759393 15759566 -8953513 + L1M4 LINE L1 4669 4845 -1370 1775 141 34 7 chrY 15759569 15759866 -8953213 + AluSx SINE Alu 3 307 -5 929 176 18 0 chrY 15759874 15760044 -8953035 + HUERS-P3 LTR ERV1 7155 7327 -1592 * 2096 111 35 8 chrY 15760035 15760412 -8952667 - Harlequin LTR ERV1 -4697 2199 1813 268 185 152 87 chrY 15760412 15760504 -8952575 + LTR8 LTR ERV1 156 253 -438 1604 106 41 9 chrY 15760510 15760885 -8952194 - Harlequin LTR ERV1 -5182 1714 1284 * 3477 157 24 25 chrY 15760883 15761521 -8951558 - Harlequin LTR ERV1 -7287 1339 703 405 277 82 29 chrY 15761911 15762117 -8950962 - Harlequin LTR ERV1 -7286 499 283 886 233 79 49 chrY 15762154 15762459 -8950620 - Harlequin LTR ERV1 -6335 314 1 1663 152 112 65 chrY 15762464 15762893 -8950186 - LTR10A LTR ERV1 -61 548 100 1327 193 13 4 chrY 15762933 15763166 -8949913 + HUERS-P3 LTR ERV1 8684 8918 -1 3410 160 64 5 chrY 15763166 15763773 -8949306 + LTR9B LTR ERV1 1 643 -1 430 326 112 40 chrY 15764556 15764903 -8948176 - L2 LINE L2 -4 3268 2897 288 244 0 0 chrY 15765580 15765670 -8947409 + (TGGA)n Simple_repeat Simple_repeat 4 93 0 1711 186 119 76 chrY 15765671 15766183 -8946896 + LTR10A LTR ERV1 15 548 -61 678 203 7 29 chrY 15766197 15766471 -8946608 + (TGGA)n Simple_repeat Simple_repeat 1 267 0 5634 115 86 25 chrY 15766492 15767970 -8945109 - pTR5 LTR ERV1 0 2438 741 340 181 39 8 chrY 15767970 15768097 -8944982 + (TGGA)n Simple_repeat Simple_repeat 1 131 0 280 241 23 35 chrY 15768145 15768232 -8944847 + (TGGG)n Simple_repeat Simple_repeat 3 88 0 400 318 71 15 chrY 15768687 15768885 -8944194 - L2 LINE L2 -188 3084 2876 336 273 23 0 chrY 15768963 15769051 -8944028 - MIR SINE MIR -109 153 64 485 311 55 41 chrY 15769644 15769937 -8943142 - L2 LINE L2 -22 3291 2995 287 263 0 0 chrY 15769944 15770001 -8943078 + AluS SINE Alu 6 62 -238 * 448 206 19 19 chrY 15770000 15770107 -8942972 + MLT1E1 LTR MaLR 74 180 -474 1418 146 21 106 chrY 15770107 15770437 -8942642 + AluYb8 SINE Alu 1 302 -16 197 267 0 0 chrY 15770464 15770509 -8942570 - L2 LINE L2 -346 2967 2923 27 49 0 0 chrY 15771059 15771100 -8941979 + AT_rich Low_complexity Low_complexity 1 41 0 1549 195 10 0 chrY 15771107 15771415 -8941664 - AluJo SINE Alu -1 311 1 200 301 57 81 chrY 15771415 15771530 -8941549 + MIR SINE MIR 21 134 -128 231 21 146 0 chrY 15771534 15771582 -8941497 + (CATTT)n Simple_repeat Simple_repeat 3 57 0 1763 176 0 13 chrY 15771582 15771888 -8941191 - AluSx SINE Alu -10 302 1 28 0 0 0 chrY 15771889 15771917 -8941162 + AT_rich Low_complexity Low_complexity 1 28 0 1427 194 16 32 chrY 15771946 15772260 -8940819 - AluSx SINE Alu -2 310 2 733 204 8 0 chrY 15772267 15772399 -8940680 - FLAM_A SINE Alu 0 133 1 685 230 7 0 chrY 15772450 15772589 -8940490 - MIR SINE MIR -52 210 71 243 111 204 19 chrY 15772817 15772871 -8940208 - Tigger2 DNA MER2_type -14 2704 2641 1429 169 50 4 chrY 15772871 15773150 -8939929 + AluSx SINE Alu 1 292 -20 827 178 18 75 chrY 15773151 15773390 -8939689 + L1ME3A LINE L1 5599 5827 -343 562 224 33 26 chrY 15774220 15774372 -8938707 + FRAM SINE Alu 20 172 -4 1336 170 25 14 chrY 15774477 15774754 -8938325 + L1MB3 LINE L1 5874 6153 -30 1212 172 0 0 chrY 15774758 15774962 -8938117 - AluJb SINE Alu -103 209 6 1710 156 33 0 chrY 15775618 15775944 -8937135 + AluSx SINE Alu 1 335 0 519 181 63 39 chrY 15776010 15776137 -8936942 + FLAM_C SINE Alu 1 130 -3 909 235 84 32 chrY 15776262 15776547 -8936532 + MER58B DNA MER1_type 27 326 -15 304 241 27 45 chrY 15776635 15776747 -8936332 + HAL1 LINE L1 1400 1509 -998 741 236 63 17 chrY 15777310 15777547 -8935532 + L1MB7 LINE L1 5912 6159 -25 314 206 9 47 chrY 15777567 15777674 -8935405 + L1MEc LINE L1 758 860 -5536 334 219 0 125 chrY 15777697 15777793 -8935286 + L1MEc LINE L1 851 930 -5466 1755 129 26 4 chrY 15777793 15778088 -8934991 + AluSx SINE Alu 5 305 0 334 219 0 125 chrY 15778088 15778118 -8934961 + L1MEc LINE L1 930 962 -5434 578 254 40 89 chrY 15778230 15778478 -8934601 - MER21B LTR ERV1 -615 248 13 1305 167 22 107 chrY 15778515 15778833 -8934246 + AluJb SINE Alu 1 291 -11 857 191 0 42 chrY 15778835 15779024 -8934055 - AluJo SINE Alu -102 210 30 1927 148 0 10 chrY 15779187 15779491 -8933588 - AluSx SINE Alu -11 301 1 6987 72 29 0 chrY 15779603 15780475 -8932604 + MER11D LTR ERVK 1 897 0 355 214 18 71 chrY 15780575 15780687 -8932392 + MLT1H LTR MaLR 75 180 -369 2966 249 65 32 chrY 15780779 15780940 -8932139 + L1M4 LINE L1 3763 3917 -2229 1487 177 0 0 chrY 15780940 15781183 -8931896 + AluSx SINE Alu 1 243 -69 2966 249 65 32 chrY 15781183 15782042 -8931037 + L1M4 LINE L1 3917 4825 -1321 1726 144 0 56 chrY 15782042 15782361 -8930718 + AluJo SINE Alu 1 301 -11 2966 249 65 32 chrY 15782361 15782438 -8930641 + L1M4 LINE L1 4825 4898 -1248 316 279 178 27 chrY 15782437 15782656 -8930423 + L1ME1 LINE L1 5910 6161 -5 * 354 183 131 59 chrY 15782728 15782881 -8930198 - MIR SINE MIR -15 247 84 540 229 0 50 chrY 15783229 15783369 -8929710 + FLAM_C SINE Alu 1 133 0 1988 227 21 42 chrY 15783677 15783726 -8929353 - LTR10D LTR ERV1 0 513 464 2611 30 0 0 chrY 15783726 15784026 -8929053 - AluY SINE Alu -11 300 1 1988 227 21 42 chrY 15784026 15784500 -8928579 - LTR10D LTR ERV1 -49 464 1 444 247 0 0 chrY 15785238 15785335 -8927744 - AluJb SINE Alu -8 304 208 222 37 0 0 chrY 15785376 15785403 -8927676 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 480 189 66 0 chrY 15786314 15786420 -8926659 - AluSc SINE Alu 0 309 197 758 185 0 0 chrY 15786667 15786797 -8926282 + AluJ SINE Alu 1 130 -172 1378 179 16 29 chrY 15787061 15787368 -8925711 + AluJb SINE Alu 1 303 -9 1135 224 0 8 chrY 15788936 15789186 -8923893 + AluJo SINE Alu 1 248 -64 1759 122 4 11 chrY 15789186 15789449 -8923630 - LTR10A LTR ERV1 -116 493 233 21 0 0 0 chrY 15789449 15789470 -8923609 + AT_rich Low_complexity Low_complexity 1 21 0 817 151 34 1 chrY 15789832 15789994 -8923085 + L1MD3 LINE L1 7534 7791 -204 514 247 107 0 chrY 15790126 15790276 -8922803 + MLT1D LTR MaLR 1 166 -460 790 190 6 25 chrY 15790319 15790477 -8922602 + AluJ SINE Alu 137 291 -21 925 223 98 19 chrY 15790480 15790745 -8922334 + MLT1D LTR MaLR 220 505 0 2171 127 0 0 chrY 15792023 15792330 -8920749 - AluSg SINE Alu -3 307 1 199 228 70 0 chrY 15793205 15793262 -8919817 + L2 LINE L2 1682 1742 -1572 1227 175 50 56 chrY 15793581 15793682 -8919397 + AluJb SINE Alu 1 101 -211 2000 129 7 7 chrY 15793682 15793992 -8919087 - AluSg SINE Alu 0 310 1 1227 175 50 56 chrY 15793992 15794193 -8918886 + AluJb SINE Alu 101 301 -11 983 187 241 0 chrY 15794594 15794835 -8918244 + AluSx SINE Alu 1 299 -3 1768 120 76 0 chrY 15794928 15795204 -8917875 + AluSx SINE Alu 1 297 -15 23 0 0 0 chrY 15795315 15795338 -8917741 + AT_rich Low_complexity Low_complexity 1 23 0 186 43 0 0 chrY 15796534 15796557 -8916522 + (CA)n Simple_repeat Simple_repeat 2 24 0 2164 100 3 10 chrY 15797039 15797350 -8915729 + AluY SINE Alu 1 309 -2 940 227 0 0 chrY 15799077 15799275 -8913804 + AluJo SINE Alu 23 220 -92 301 221 73 0 chrY 15799319 15799387 -8913692 + L1MCa LINE L1 1996 2068 -4358 639 209 9 0 chrY 15799411 15799526 -8913553 + FRAM SINE Alu 1 114 -62 853 204 33 38 chrY 15799527 15799738 -8913341 + AluJo SINE Alu 86 295 -17 982 189 92 0 chrY 15799815 15800032 -8913047 - AluJb SINE Alu -73 239 3 1672 149 9 44 chrY 15800109 15800425 -8912654 + AluSq SINE Alu 1 305 -8 866 198 6 0 chrY 15800557 15800719 -8912360 - AluJo SINE Alu -30 282 120 5369 99 38 9 chrY 15800770 15801526 -8911553 + LTR17 LTR ERV1 2 779 -1 8692 101 11 16 chrY 15801527 15803482 -8909597 + HERV17 LTR ERV1 1 2016 -6610 * 20837 78 3 2 chrY 15803465 15805295 -8907784 + HERV17 LTR ERV1 2430 4256 -4370 240 35 0 0 chrY 15805295 15805324 -8907755 + (ATTG)n Simple_repeat Simple_repeat 2 30 0 2044 138 0 0 chrY 15805324 15805607 -8907472 - AluY SINE Alu -28 283 1 20837 78 3 2 chrY 15805607 15807273 -8905806 + HERV17 LTR ERV1 4255 6019 -2607 2084 115 14 3 chrY 15807284 15807579 -8905500 + HERV17 LTR ERV1 8329 8626 0 5601 104 45 7 chrY 15807579 15808330 -8904749 + LTR17 LTR ERV1 1 780 0 1132 205 9 0 chrY 15808480 15808690 -8904389 - L1PA16 LINE L1 -9 6157 5946 201 354 10 0 chrY 15809152 15809251 -8903828 + (CAT)n Simple_repeat Simple_repeat 2 101 0 507 130 33 22 chrY 15809291 15809383 -8903696 + MER4A LTR ERV1 4 96 -568 1595 172 12 50 chrY 15809399 15809737 -8903342 + MER4A LTR ERV1 340 664 0 218 164 27 41 chrY 15809887 15809960 -8903119 + (TTTG)n Simple_repeat Simple_repeat 4 75 0 1591 173 94 24 chrY 15810935 15811220 -8901859 + MLT1A1 LTR MaLR 1 313 -52 1190 140 60 30 chrY 15811220 15811455 -8901624 + MER75B DNA T2_type 2 243 0 1591 173 94 24 chrY 15811455 15811499 -8901580 + MLT1A1 LTR MaLR 313 353 -12 846 221 5 48 chrY 15811872 15812080 -8900999 + MER20 DNA MER1_type 1 199 -20 1210 137 0 0 chrY 15812080 15812296 -8900783 + AluY SINE Alu 130 345 0 1614 175 3 69 chrY 15812536 15812733 -8900346 - AluJo SINE Alu -1 311 143 1535 233 0 0 chrY 15812733 15813021 -8900058 - AluSx SINE Alu -24 288 1 1614 175 3 69 chrY 15813021 15813155 -8899924 - AluJo SINE Alu -169 143 2 1338 214 81 43 chrY 15813198 15813619 -8899460 - MLT1C LTR MaLR -8 459 23 629 242 103 70 chrY 15813649 15813839 -8899240 - MLT1C LTR MaLR -122 345 138 2211 165 8 22 chrY 15813839 15814208 -8898871 + THE1B LTR MaLR 1 364 0 629 242 103 70 chrY 15814208 15814347 -8898732 - MLT1C LTR MaLR -329 138 5 384 215 102 136 chrY 15814358 15814711 -8898368 - MLT1C LTR MaLR -119 348 8 1759 169 14 0 chrY 15814826 15815149 -8897930 - AluSx SINE Alu 0 327 1 1441 268 3 5 chrY 15815332 15815702 -8897377 + L1MB7 LINE L1 5632 6000 -184 750 217 13 0 chrY 15815712 15815864 -8897215 - L1MB7 LINE L1 -16 6168 6015 261 122 24 0 chrY 15815867 15815908 -8897171 + L1MB7 LINE L1 6052 6093 -91 * 1258 220 89 3 chrY 15815883 15816197 -8896882 + L1MB5 LINE L1 5826 6166 -8 950 246 71 16 chrY 15816284 15816536 -8896543 + AluJo SINE Alu 10 275 -37 1113 236 65 8 chrY 15817135 15817398 -8895681 - AluJo SINE Alu -30 282 5 554 270 68 6 chrY 15817556 15817719 -8895360 + MLT1B LTR MaLR 1 173 -217 255 125 0 0 chrY 15817735 15817775 -8895304 + (TC)n Simple_repeat Simple_repeat 1 40 0 692 242 43 5 chrY 15817775 15817961 -8895118 - L1MB1 LINE L1 -1 6167 5975 707 287 0 0 chrY 15818016 15818197 -8894882 + MLT1B LTR MaLR 208 388 -2 1845 167 120 29 chrY 15818265 15818649 -8894430 - MSTA LTR MaLR -7 421 3 2266 223 25 8 chrY 15818970 15819482 -8893597 + L1MB1 LINE L1 5586 6106 -83 2301 103 3 51 chrY 15819486 15819836 -8893243 + L1PB1 LINE L1 5801 6133 -18 375 145 43 0 chrY 15819876 15819945 -8893134 + L1MB1 LINE L1 6092 6163 -5 234 0 0 0 chrY 15820773 15820799 -8892280 + (A)n Simple_repeat Simple_repeat 1 26 0 204 201 29 43 chrY 15821001 15821149 -8891930 + CT-rich Low_complexity Low_complexity 1 145 0 2611 186 23 29 chrY 15821154 15821660 -8891419 - LTR12 LTR ERV1 -98 2340 1 4921 141 28 59 chrY 15821664 15822564 -8890515 - HERV9 LTR ERV1 -4 8395 7524 * 12220 138 9 4 chrY 15822561 15822584 -8890495 - HERV9 LTR ERV1 -1012 7387 7366 261 0 0 0 chrY 15822584 15822613 -8890466 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 12220 138 9 4 chrY 15822613 15825664 -8887415 - HERV9 LTR ERV1 -1033 7366 4238 * 20564 149 7 30 chrY 15825661 15829165 -8883914 - HERV9 LTR ERV1 -4452 3947 523 234 0 0 0 chrY 15829173 15829199 -8883880 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 3066 67 3 18 chrY 15829206 15829595 -8883484 - L1PA5 LINE L1 -2 6152 5770 207 0 0 0 chrY 15829740 15829763 -8883316 + (TTTAA)n Simple_repeat Simple_repeat 4 26 0 41931 67 2 2 chrY 15829763 15835894 -8877185 - L1PA3 LINE L1 -10 6145 12 22108 89 3 1 chrY 15835896 15839367 -8873712 - L1PA5 LINE L1 -371 5783 2304 12731 137 6 0 chrY 15839365 15841265 -8871814 - L1PA5 LINE L1 -4221 1925 15 * 2902 182 2 0 chrY 15841269 15841741 -8871338 - HERV9 LTR ERV1 -7873 526 54 574 218 2 45 chrY 15841757 15841875 -8871204 - LTR12 LTR ERV1 -130 584 382 2023 125 7 14 chrY 15841875 15842162 -8870917 + AluY SINE Alu 5 289 -22 574 218 2 45 chrY 15842162 15842195 -8870884 - LTR12 LTR ERV1 -332 382 349 232 296 0 0 chrY 15842195 15842266 -8870813 - LTR30 LTR ERV1 -108 614 544 1041 168 172 8 chrY 15842266 15842504 -8870575 - LTR12 LTR ERV1 -437 277 1 405 236 4 17 chrY 15842531 15842769 -8870310 + CT-rich Low_complexity Low_complexity 1 235 0 390 220 29 40 chrY 15842972 15843035 -8870044 + L1MB7 LINE L1 5598 5663 -512 720 200 0 30 chrY 15843035 15843170 -8869909 + FLAM_C SINE Alu 2 132 -1 390 220 29 40 chrY 15843170 15843221 -8869858 + L1MB7 LINE L1 5663 5713 -462 363 203 0 0 chrY 15843233 15843297 -8869782 + AluJ/FLAM SINE Alu 12 75 -227 837 251 18 0 chrY 15843308 15843479 -8869600 + AluSg/x SINE Alu 121 294 -18 886 280 35 55 chrY 15843491 15843849 -8869230 + L1MB7 LINE L1 5700 6051 -127 1595 204 0 10 chrY 15843849 15844157 -8868922 + AluSx SINE Alu 3 307 -5 886 280 35 55 chrY 15844157 15844198 -8868881 + L1MB7 LINE L1 6051 6091 -87 27 0 0 0 chrY 15844256 15844283 -8868796 + AT_rich Low_complexity Low_complexity 1 27 0 3113 123 0 2 chrY 15844283 15844721 -8868358 - L1PA7 LINE L1 -8 6146 5710 332 169 15 0 chrY 15844723 15844788 -8868291 + L1MB3 LINE L1 6115 6180 -3 3319 206 11 42 chrY 15845281 15845876 -8867203 - MER50 LTR ERV1 -13 721 152 1742 168 21 0 chrY 15845876 15846162 -8866917 - AluSx SINE Alu -20 292 1 3319 206 11 42 chrY 15846162 15846310 -8866769 - MER50 LTR ERV1 -582 152 1 496 281 0 0 chrY 15847587 15847715 -8865364 + L1MB3 LINE L1 5804 5931 -252 623 188 7 56 chrY 15847717 15847861 -8865218 - LTR23 LTR ERV1 -2 435 299 1385 238 50 32 chrY 15847872 15848310 -8864769 + LTR10B LTR ERV1 16 547 0 1935 255 87 34 chrY 15848310 15849372 -8863707 + LTR10B-int LTR ERV1 5 1132 -5970 2741 276 13 10 chrY 15849430 15850136 -8862943 + BaEV-int LTR ERV1 929 1636 -5013 * 5617 276 17 44 chrY 15850130 15852437 -8860642 + BaEV-int LTR ERV1 2284 3454 -3195 850 138 89 98 chrY 15852480 15852683 -8860396 + LTR12 LTR ERV1 55 255 -459 373 181 79 40 chrY 15852685 15852786 -8860293 + LTR30 LTR ERV1 553 624 -98 590 229 34 0 chrY 15852786 15852904 -8860175 + LTR12 LTR ERV1 359 480 -234 25895 141 9 12 chrY 15852929 15861133 -8851946 + HERV9 LTR ERV1 59 8399 0 1653 171 3 11 chrY 15861171 15861458 -8851621 + LTR12 LTR ERV1 1 285 -429 236 256 33 22 chrY 15861459 15861549 -8851530 + LTR30 LTR ERV1 553 643 -79 698 175 0 8 chrY 15861550 15861670 -8851409 + LTR12 LTR ERV1 481 599 -115 9163 254 22 28 chrY 15861747 15864182 -8848897 + LTR10B-int LTR ERV1 4230 6649 0 1604 213 58 31 chrY 15864182 15864623 -8848456 + LTR10B LTR ERV1 1 547 0 1058 194 0 10 chrY 15864634 15864830 -8848249 - AluJb SINE Alu -15 297 104 1396 183 17 28 chrY 15864834 15865124 -8847955 - LTR56 LTR ERV1 -147 298 12 1472 215 13 10 chrY 15865253 15865609 -8847470 + AluJb SINE Alu 1 357 0 1186 164 37 0 chrY 15865773 15865962 -8847117 + AluSx SINE Alu 11 206 -106 2262 196 8 3 chrY 15866025 15866387 -8846692 + THE1B LTR MaLR 1 364 0 1743 171 7 0 chrY 15866482 15866774 -8846305 + MER41B LTR ERV1 1 294 -341 2551 162 6 129 chrY 15866774 15867410 -8845669 - LTR6A LTR ERV1 0 564 1 1604 178 59 39 chrY 15867410 15867560 -8845519 + MER41B LTR ERV1 291 436 -199 1863 186 30 22 chrY 15867560 15867930 -8845149 - THE1C LTR MaLR -2 373 1 1604 178 59 39 chrY 15867930 15868117 -8844962 + MER41B LTR ERV1 436 635 0 1117 205 40 4 chrY 15868546 15868795 -8844284 + LTR26 LTR ERV1 1 258 -345 536 285 53 42 chrY 15868868 15869131 -8843948 + L1MD2 LINE L1 6084 6349 -10 2161 222 48 71 chrY 15869397 15870058 -8843021 + MER82 DNA MER2_type 7 652 -1 24 0 0 0 chrY 15871864 15871888 -8841191 + AT_rich Low_complexity Low_complexity 1 24 0 1797 202 25 14 chrY 15872014 15872375 -8840704 - MLT1A1 LTR MaLR 0 365 1 294 143 0 0 chrY 15872603 15872645 -8840434 + Alu SINE Alu 1 42 -266 1665 271 88 44 chrY 15872785 15873233 -8839846 - MLT1E1 LTR MaLR 0 654 170 1796 172 7 7 chrY 15873233 15873536 -8839543 - AluSq SINE Alu -10 303 1 1665 271 88 44 chrY 15873536 15873697 -8839382 - MLT1E1 LTR MaLR -484 170 18 1834 107 60 37 chrY 15873746 15874089 -8838990 - MER11B LTR ERVK -5 1231 737 * 3692 98 42 0 chrY 15874069 15874597 -8838482 - MER11B LTR ERVK -686 550 1 1365 223 15 24 chrY 15874601 15874929 -8838150 - L1PA16 LINE L1 -72 6094 5770 1582 170 15 0 chrY 15874931 15875202 -8837877 + MER11B LTR ERVK 446 720 -516 1935 166 75 10 chrY 15875211 15875596 -8837483 - L1PA16 LINE L1 -402 5754 5345 1506 181 8 0 chrY 15875605 15875853 -8837226 - AluSg SINE Alu -25 285 36 394 220 57 10 chrY 15875886 15875990 -8837089 + AluJ/FRAM SINE Alu 216 285 -17 423 0 0 0 chrY 15875990 15876037 -8837042 + (CATA)n Simple_repeat Simple_repeat 2 48 0 1109 144 54 114 chrY 15876256 15876701 -8836378 + LTR12 LTR ERV1 1 277 -437 382 222 0 0 chrY 15876701 15876782 -8836297 + LTR30 LTR ERV1 544 624 -98 682 236 24 0 chrY 15876782 15876905 -8836174 + LTR12 LTR ERV1 359 484 -230 1599 186 10 22 chrY 15877143 15877455 -8835624 + AluSg SINE Alu 1 308 -2 2629 166 80 31 chrY 15878302 15878874 -8834205 + L1PA16 LINE L1 5566 6165 -1 32917 130 18 10 chrY 15878880 15884991 -8828088 + L1PA6 LINE L1 4 6164 0 1654 181 3 0 chrY 15885401 15885689 -8827390 + AluSx SINE Alu 24 312 0 312 70 0 0 chrY 15886339 15886382 -8826697 + (TTTTC)n Simple_repeat Simple_repeat 2 44 0 706 252 0 0 chrY 15886385 15886520 -8826559 - AluSq/x SINE Alu -176 136 2 868 182 89 0 chrY 15886531 15886734 -8826345 - L1MA8 LINE L1 -5 6286 6066 1740 175 7 3 chrY 15887051 15887336 -8825743 + AluJb SINE Alu 3 288 -24 2406 91 0 25 chrY 15887463 15887782 -8825297 + AluY SINE Alu 1 311 0 961 257 17 21 chrY 15887988 15888027 -8825052 + AluJo SINE Alu 6 44 -268 4618 92 3 3 chrY 15888027 15888614 -8824465 + LTR14C LTR ERVK 1 587 0 961 257 17 21 chrY 15888614 15888862 -8824217 + AluJo SINE Alu 44 292 -20 541 173 29 10 chrY 15889037 15889141 -8823938 + MER4A LTR ERV1 1 106 -558 823 196 208 20 chrY 15889187 15889432 -8823647 + MER4A LTR ERV1 373 663 -1 682 275 48 0 chrY 15889838 15890045 -8823034 + L1MB5 LINE L1 5939 6155 -19 1193 153 5 0 chrY 15890338 15890534 -8822545 + MER41B LTR ERV1 2 198 -437 1122 257 16 4 chrY 15890643 15890888 -8822191 + LTR10B LTR ERV1 300 547 0 4506 278 54 57 chrY 15890888 15892834 -8820245 + LTR10B-int LTR ERV1 4 1944 -4705 1822 272 0 0 chrY 15892885 15893304 -8819775 + LTR10B-int LTR ERV1 2914 3332 -3317 38509 98 4 6 chrY 15893327 15899483 -8813596 + L1PA5 LINE L1 11 6150 -4 7669 294 57 47 chrY 15899494 15902971 -8810108 + LTR10B-int LTR ERV1 4258 7771 -14 946 242 70 19 chrY 15903034 15903330 -8809749 + LTR10B LTR ERV1 296 547 0 679 171 0 41 chrY 15903330 15903449 -8809630 + MER41A LTR ERV1 196 309 -245 1344 164 32 0 chrY 15903450 15903669 -8809410 - MER4B LTR ERV1 -4 606 381 263 163 82 0 chrY 15903759 15903808 -8809271 - MER4A LTR ERV1 -351 313 261 * 431 172 108 0 chrY 15903805 15903898 -8809181 - MER4A LTR ERV1 -561 103 1 1585 147 4 0 chrY 15903898 15904149 -8808930 + MER41A LTR ERV1 303 554 0 1407 241 17 34 chrY 15904317 15904724 -8808355 + L1MC2 LINE L1 5937 6336 -8 286 151 0 19 chrY 15904728 15904781 -8808298 + L1PB2 LINE L1 5821 5872 -279 394 205 0 36 chrY 15904964 15905047 -8808032 + LTR10B LTR ERV1 468 547 0 669 168 0 0 chrY 15905047 15905142 -8807937 - AluSg/x SINE Alu -31 281 187 1536 158 7 74 chrY 15905143 15905404 -8807675 + L1PB2 LINE L1 5860 6098 -53 2339 151 20 0 chrY 15905404 15905761 -8807318 + THE1B LTR MaLR 1 364 0 1536 158 7 74 chrY 15905761 15905809 -8807270 + L1PB2 LINE L1 6098 6148 -3 531 0 0 0 chrY 15905922 15905981 -8807098 + (TA)n Simple_repeat Simple_repeat 1 59 0 38904 88 11 4 chrY 15905981 15912087 -8800992 - L1PA5 LINE L1 -20 6134 2 186 158 0 0 chrY 15912188 15912207 -8800872 + (TAA)n Simple_repeat Simple_repeat 2 20 -19 1409 222 3 7 chrY 15912207 15912495 -8800584 + AluJb SINE Alu 1 287 -25 186 158 0 0 chrY 15912495 15912513 -8800566 + (TAA)n Simple_repeat Simple_repeat 19 39 0 1801 144 36 4 chrY 15912989 15913267 -8799812 - AluSx SINE Alu -21 291 5 764 181 8 8 chrY 15913297 15913424 -8799655 + FLAM_C SINE Alu 1 127 -16 208 68 23 45 chrY 15913424 15913468 -8799611 + (TAA)n Simple_repeat Simple_repeat 3 45 0 654 212 17 0 chrY 15913748 15913866 -8799213 - AluSp SINE Alu -133 180 61 3183 216 34 16 chrY 15914038 15914222 -8798857 + L1PA16 LINE L1 5145 5324 -842 1674 196 3 10 chrY 15914222 15914528 -8798551 + AluSx SINE Alu 3 306 -6 3183 216 34 16 chrY 15914528 15915275 -8797804 + L1PA16 LINE L1 5324 6160 -6 779 188 24 29 chrY 15915272 15915442 -8797637 + L1MB3 LINE L1 5428 5596 -578 * 362 175 16 0 chrY 15915442 15915505 -8797574 + Charlie1 DNA MER1_type 2697 2760 -1 714 238 6 0 chrY 15915896 15916056 -8797023 + MER58B DNA MER1_type 167 327 -14 1670 229 36 45 chrY 15916264 15916326 -8796753 + MER89 LTR ERV1 1 62 -497 2015 107 10 32 chrY 15916326 15916634 -8796445 + AluY SINE Alu 5 305 -6 1670 229 36 45 chrY 15916634 15917043 -8796036 + MER89 LTR ERV1 62 468 -91 299 238 20 14 chrY 15917048 15917195 -8795884 + (TGGA)n Simple_repeat Simple_repeat 4 151 0 477 245 21 20 chrY 15917221 15917562 -8795517 + (TGGA)n Simple_repeat Simple_repeat 1 341 0 434 217 25 0 chrY 15917660 15917821 -8795258 + (TGGA)n Simple_repeat Simple_repeat 4 168 0 350 253 11 0 chrY 15917833 15917920 -8795159 + MER89 LTR ERV1 472 559 0 1574 204 3 13 chrY 15919032 15919336 -8793743 - AluJb SINE Alu -11 301 1 797 129 11 22 chrY 15920166 15920344 -8792735 + (TCCA)n Simple_repeat Simple_repeat 3 178 0 274 204 29 35 chrY 15920387 15920559 -8792520 + (TCCA)n Simple_repeat Simple_repeat 3 173 0 2306 217 22 8 chrY 15920735 15921242 -8791837 + L1MB3 LINE L1 5566 6079 -104 1237 160 13 35 chrY 15921277 15921508 -8791571 + AluJo SINE Alu 87 312 0 763 142 131 127 chrY 15921508 15921776 -8791303 + L1MA8 LINE L1 6021 6289 -2 40 59 0 0 chrY 15921859 15921927 -8791152 + AT_rich Low_complexity Low_complexity 1 68 0 607 202 0 0 chrY 15921958 15922067 -8791012 + AluSp/q SINE Alu 205 313 0 821 257 64 0 chrY 15922077 15922279 -8790800 - AluJo SINE Alu -97 215 1 271 260 175 32 chrY 15922821 15922975 -8790104 + MIR SINE MIR 45 220 -42 337 346 59 48 chrY 15923012 15923367 -8789712 - HAL1 LINE L1 -698 1809 1451 1899 153 44 0 chrY 15923368 15923710 -8789369 - AluSx SINE Alu 0 355 1 475 274 0 53 chrY 15923730 15923920 -8789159 + CT-rich Low_complexity Low_complexity 1 180 0 1576 187 17 13 chrY 15924087 15924386 -8788693 + AluJb SINE Alu 1 300 -12 1634 191 0 0 chrY 15924910 15925215 -8787864 + AluSx SINE Alu 5 309 0 1444 220 48 3 chrY 15925255 15925569 -8787510 + MLT1A1 LTR MaLR 1 328 -37 361 323 191 34 chrY 15925591 15925916 -8787163 + HAL1 LINE L1 179 554 -1953 1508 191 0 68 chrY 15926055 15926364 -8786715 - AluJb SINE Alu -24 288 1 1585 126 4 0 chrY 15926401 15926631 -8786448 - L1PA14 LINE L1 -3 6158 5928 206 81 27 0 chrY 15926678 15926715 -8786364 + (TA)n Simple_repeat Simple_repeat 1 38 0 231 253 11 21 chrY 15926733 15926828 -8786251 + (TA)n Simple_repeat Simple_repeat 2 95 0 206 157 0 20 chrY 15927086 15927137 -8785942 + CT-rich Low_complexity Low_complexity 3 52 0 567 29 0 0 chrY 15927139 15927208 -8785871 + (TTATG)n Simple_repeat Simple_repeat 2 70 0 1325 223 3 34 chrY 15927210 15927506 -8785573 - AluJb SINE Alu -25 287 1 1523 197 17 13 chrY 15927607 15927906 -8785173 + AluJo SINE Alu 1 300 -12 1036 192 135 20 chrY 15928181 15928426 -8784653 + AluSg SINE Alu 1 273 -37 282 73 0 0 chrY 15928432 15928473 -8784606 + (CA)n Simple_repeat Simple_repeat 2 42 0 433 207 180 0 chrY 15928941 15929052 -8784027 - FLAM_A SINE Alu -1 132 2 237 228 51 13 chrY 15929087 15929166 -8783913 - L1MC/D LINE L1 -2376 5432 5351 884 208 143 29 chrY 15929170 15929415 -8783664 - AluSg SINE Alu -37 273 1 2057 185 103 5 chrY 15929422 15929849 -8783230 - L1MC1 LINE L1 0 6333 5865 1372 248 3 0 chrY 15929865 15930155 -8782924 - AluJo SINE Alu -9 303 13 249 98 0 0 chrY 15930168 15930209 -8782870 + (TTTA)n Simple_repeat Simple_repeat 3 43 0 2015 126 0 64 chrY 15930214 15930394 -8782685 - AluSc SINE Alu -4 305 154 2032 142 3 7 chrY 15930394 15930703 -8782376 - AluY SINE Alu -3 308 1 2015 126 0 64 chrY 15930703 15930848 -8782231 - AluSc SINE Alu -155 154 1 1931 181 21 0 chrY 15930854 15931190 -8781889 - L1MC1 LINE L1 -530 5803 5461 1703 189 7 0 chrY 15931283 15931589 -8781490 - AluJo SINE Alu 0 312 5 515 288 158 36 chrY 15931589 15932360 -8780719 - L1MC/D LINE L1 -2064 4082 3214 239 222 19 37 chrY 15932387 15932495 -8780584 + (TTAAA)n Simple_repeat Simple_repeat 3 108 0 271 237 0 0 chrY 15932515 15932574 -8780505 + MER2 DNA MER2_type 31 89 -256 34 65 0 0 chrY 15932629 15932691 -8780388 + AT_rich Low_complexity Low_complexity 1 62 0 21 0 0 0 chrY 15932765 15932786 -8780293 + AT_rich Low_complexity Low_complexity 1 21 0 749 251 25 10 chrY 15933687 15933886 -8779193 + MER2 DNA MER2_type 9 210 -135 317 211 28 0 chrY 15933882 15933953 -8779126 - AluJ/FRAM SINE Alu 0 302 230 * 299 106 21 0 chrY 15933954 15934001 -8779078 + LTR12 LTR ERV1 2 49 -665 263 254 0 0 chrY 15934034 15934105 -8778974 + LTR30 LTR ERV1 544 614 -108 781 159 10 15 chrY 15934105 15934273 -8778806 + LTR12 LTR ERV1 301 584 -130 * 3394 152 4 0 chrY 15934261 15934782 -8778297 + HERV9 LTR ERV1 60 582 -7817 35241 59 3 1 chrY 15934783 15940056 -8773023 - L1PA3 LINE L1 0 6155 872 1671 71 0 0 chrY 15940050 15940262 -8772817 - L1P LINE L1 -2538 3608 3397 * 299 159 0 0 chrY 15940262 15940306 -8772773 + HERV9 LTR ERV1 3793 3836 -4563 396 88 0 0 chrY 15940306 15940363 -8772716 + L1P LINE L1 5137 5193 -953 * 720 41 0 10 chrY 15940354 15940451 -8772628 + L1P LINE L1 3310 3405 -2741 374 98 0 0 chrY 15940451 15940502 -8772577 + L1P LINE L1 5182 5232 -914 7704 114 10 11 chrY 15940506 15941643 -8771436 + HERV9 LTR ERV1 3839 4973 -3426 1631 149 21 14 chrY 15941613 15941901 -8771178 + HERV17 LTR ERV1 760 1049 -7577 * 1594 138 4 25 chrY 15941888 15942316 -8770763 + HERV17 LTR ERV1 1275 1740 -5156 * 5000 139 15 11 chrY 15942300 15943083 -8769996 + HERV17 LTR ERV1 7613 8398 -1 233 233 0 0 chrY 15943085 15943128 -8769951 + LTR30 LTR ERV1 1 43 -679 860 170 111 0 chrY 15943151 15943322 -8769757 + LTR12 LTR ERV1 88 277 -437 345 244 0 0 chrY 15943322 15943404 -8769675 + LTR30 LTR ERV1 544 625 -97 538 237 3 0 chrY 15943405 15943523 -8769556 + LTR12 LTR ERV1 361 581 -133 713 194 7 49 chrY 15943523 15943667 -8769412 - AluJo SINE Alu -79 233 96 34 0 0 0 chrY 15943710 15943744 -8769335 + AT_rich Low_complexity Low_complexity 1 34 0 948 91 0 0 chrY 15943744 15943865 -8769214 - L1PA5 LINE L1 -8 6146 6026 261 57 0 0 chrY 15943866 15943901 -8769178 + (TCTA)n Simple_repeat Simple_repeat 4 38 0 666 232 16 0 chrY 15943904 15944029 -8769050 - AluSq/x SINE Alu -184 128 2 631 233 16 0 chrY 15944471 15944600 -8768479 - FLAM_A SINE Alu -2 131 1 945 210 9 58 chrY 15944665 15944889 -8768190 - AluJo SINE Alu -95 217 5 279 0 0 0 chrY 15945114 15945145 -8767934 + (TTA)n Simple_repeat Simple_repeat 3 33 0 207 43 85 21 chrY 15945147 15945194 -8767885 + (TA)n Simple_repeat Simple_repeat 1 50 0 6466 102 5 16 chrY 15945194 15946481 -8766598 - L1PA7 LINE L1 -8 6146 4857 606 259 82 20 chrY 15946813 15946960 -8766119 - AluJo SINE Alu -10 292 137 992 229 0 9 chrY 15946966 15947184 -8765895 - AluJb SINE Alu -10 302 87 694 213 8 0 chrY 15947460 15947582 -8765497 - AluJo SINE Alu -181 131 9 207 0 0 0 chrY 15947592 15947615 -8765464 + (TC)n Simple_repeat Simple_repeat 2 24 0 2001 141 7 7 chrY 15947615 15947913 -8765166 - AluSq SINE Alu -14 299 2 2173 219 16 12 chrY 15947970 15948463 -8764616 + L1MB7 LINE L1 5654 6148 -36 2960 157 2 2 chrY 15948478 15948955 -8764124 - MER41B LTR ERV1 -14 621 145 439 297 10 0 chrY 15949108 15949209 -8763870 - MER5A DNA MER1_type -61 128 27 1108 223 29 84 chrY 15949498 15949808 -8763271 - AluJo SINE Alu -19 293 1 543 258 15 8 chrY 15950110 15950242 -8762837 + FRAM SINE Alu 22 154 -22 1867 165 3 10 chrY 15950252 15950549 -8762530 + AluSq SINE Alu 1 295 -18 1479 160 9 0 chrY 15950597 15950828 -8762251 - AluSg/x SINE Alu -12 300 68 406 268 0 47 chrY 15951038 15951165 -8761914 - MLT1C LTR MaLR -8 459 339 658 63 0 0 chrY 15951165 15951244 -8761835 - L1P2 LINE L1 -504 5651 5573 * 17606 115 5 1 chrY 15951242 15953785 -8759294 - L1P LINE L1 -3583 2563 11 1119 106 0 0 chrY 15953800 15953951 -8759128 - L1P2 LINE L1 -374 5780 5630 8725 173 44 3 chrY 15953952 15955431 -8757648 + HUERS-P2 LTR ERV1 1549 3088 0 2668 239 65 67 chrY 15955431 15956218 -8756861 + LTR1 LTR ERV1 1 785 0 721 204 0 8 chrY 15956218 15956340 -8756739 + AluSg/x SINE Alu 183 294 -18 21 71 0 0 chrY 15956459 15956501 -8756578 + AT_rich Low_complexity Low_complexity 1 42 0 958 289 66 7 chrY 15956505 15956778 -8756301 + AluJo SINE Alu 3 291 -11 31 0 0 0 chrY 15956869 15956900 -8756179 + AT_rich Low_complexity Low_complexity 1 31 0 1129 83 13 0 chrY 15957530 15957686 -8755393 - L1PA7 LINE L1 -1 6153 5996 349 324 169 7 chrY 15958594 15958742 -8754337 - MER5A DNA MER1_type -7 182 11 21 36 0 0 chrY 15958920 15958948 -8754131 + AT_rich Low_complexity Low_complexity 1 28 0 782 276 52 45 chrY 15959456 15959742 -8753337 - AluJo SINE Alu -14 288 1 4333 204 27 58 chrY 15960337 15961333 -8751746 + MSTA-int LTR MaLR 616 1580 0 474 212 206 7 chrY 15961333 15961479 -8751600 + MSTA LTR MaLR 1 175 -253 802 208 154 110 chrY 15961480 15961817 -8751262 + MSTA LTR MaLR 77 428 0 1396 224 60 21 chrY 15961949 15962280 -8750799 + THE1C LTR MaLR 32 375 0 1630 195 3 3 chrY 15962315 15962602 -8750477 + AluSx SINE Alu 1 287 -25 192 253 80 27 chrY 15963126 15963201 -8749878 - MIR SINE MIR -30 232 154 594 220 0 1 chrY 15963749 15963868 -8749211 - THE1C LTR MaLR -210 165 39 1490 177 17 58 chrY 15964653 15964947 -8748132 + AluSq SINE Alu 1 282 -31 668 63 0 11 chrY 15964949 15965044 -8748035 + (GGAA)n Simple_repeat Simple_repeat 3 96 0 1271 244 46 3 chrY 15965548 15965897 -8747182 - LTR56 LTR ERV1 0 445 82 10751 185 18 94 chrY 15965908 15968900 -8744179 + L1P LINE L1 12 2777 -3369 2807 103 82 0 chrY 15968928 15969355 -8743724 + L1PA7 LINE L1 5690 6151 -3 331 228 33 22 chrY 15969355 15969447 -8743632 - LTR56 LTR ERV1 -352 93 1 1191 239 37 18 chrY 15969911 15970460 -8742619 - MER67C LTR ERV1 -11 699 80 279 0 0 0 chrY 15970665 15970696 -8742383 + (A)n Simple_repeat Simple_repeat 1 31 0 411 207 19 19 chrY 15971227 15971389 -8741690 + LTR56 LTR ERV1 276 437 0 24 85 0 0 chrY 15971923 15971982 -8741097 + AT_rich Low_complexity Low_complexity 1 59 0 1556 213 26 0 chrY 15972025 15972335 -8740744 - MER83C LTR ERV1 -39 334 17 2735 235 57 10 chrY 15972340 15973457 -8739622 - MER83C-int LTR ERV1 -4 4876 3638 1703 189 0 0 chrY 15973457 15973738 -8739341 - AluSq SINE Alu -19 294 14 1084 293 111 46 chrY 15973756 15974433 -8738646 - MER50 LTR ERV1 0 734 14 1868 189 26 10 chrY 15974433 15974948 -8738131 - MER50-int LTR ERV1 -2 7203 3889 39653 73 13 1 chrY 15975285 15981367 -8731712 + L1PA4 LINE L1 2 6153 -2 459 304 49 41 chrY 15982468 15982906 -8730173 - MER50-int LTR ERV1 -2016 5740 4807 460 288 73 42 chrY 15983259 15983684 -8729395 - MER50-int LTR ERV1 -1808 5283 4547 438 328 0 8 chrY 15983743 15983868 -8729211 - MER50-int LTR ERV1 -4296 2909 2786 * 1254 195 21 47 chrY 15983852 15984191 -8728888 - MER50-int LTR ERV1 -1129 6076 5747 2502 151 44 46 chrY 15984198 15984694 -8728385 - MER50-int LTR ERV1 -840 5106 4612 272 87 65 0 chrY 15984689 15984735 -8728344 - MER50-int LTR ERV1 -2334 2883 2835 * 1181 204 104 13 chrY 15984735 15985132 -8727947 - MER50-int LTR ERV1 -3921 2025 1628 2037 194 15 10 chrY 15985146 15985553 -8727526 - MER50-int LTR ERV1 -886 3994 3586 517 268 9 0 chrY 15985550 15985662 -8727417 - MER50-int LTR ERV1 -4305 2900 2788 * 331 309 0 44 chrY 15985698 15985834 -8727245 - MER50-int LTR ERV1 -460 4757 4628 1567 189 45 49 chrY 15985849 15986248 -8726831 - THE1B LTR MaLR -10 418 3 9587 164 5 7 chrY 15986250 15987789 -8725290 - THE1B-int LTR MaLR 0 1580 45 1291 201 51 37 chrY 15987789 15988083 -8724996 - THE1B LTR MaLR -66 298 1 270 209 110 11 chrY 15988083 15988174 -8724905 - MER50-int LTR ERV1 -5535 1670 1571 2657 225 149 90 chrY 15988207 15989365 -8723714 - MER50-int LTR ERV1 -5586 1619 393 372 264 28 19 chrY 15989367 15989473 -8723606 - MER50-int LTR ERV1 -7098 107 1 1078 262 140 52 chrY 15989494 15990143 -8722936 - MER50 LTR ERV1 -12 722 17 2673 249 32 27 chrY 15990156 15990177 -8722902 - MER83B-int LTR ERV1 -1244 3636 3617 1792 182 36 22 chrY 15990177 15990534 -8722545 + THE1B LTR MaLR 3 364 0 2673 249 32 27 chrY 15990534 15991371 -8721708 - MER83B-int LTR ERV1 -1263 3617 683 2982 243 30 7 chrY 15991460 15992155 -8720924 + MER50 LTR ERV1 1 711 -23 4851 201 44 7 chrY 15992156 15993368 -8719711 + MER50-int LTR ERV1 1 1347 -5858 1622 169 126 6 chrY 15993497 15993822 -8719257 - THE1B LTR MaLR 0 364 1 7394 183 59 30 chrY 15993822 15994137 -8718942 - THE1B-int LTR MaLR 0 1580 1276 2274 84 3 3 chrY 15994137 15994433 -8718646 - AluY SINE Alu -15 296 1 7394 183 59 30 chrY 15994433 15995652 -8717427 - THE1B-int LTR MaLR -304 1276 1 1728 191 42 33 chrY 15995652 15996013 -8717066 - THE1B LTR MaLR 0 364 1 24 0 0 0 chrY 15996043 15996067 -8717012 + AT_rich Low_complexity Low_complexity 1 24 0 317 217 27 81 chrY 15996280 15996501 -8716578 + LTR56-int LTR ERV1 3467 3675 -2656 1010 261 14 14 chrY 15996607 15996890 -8716189 + AluJb SINE Alu 11 293 -19 265 234 164 0 chrY 15996901 15997029 -8716050 + LTR56-int LTR ERV1 3184 3332 -1548 1868 160 0 0 chrY 15997029 15997304 -8715775 + AluSg SINE Alu 1 275 -35 233 29 29 0 chrY 15997308 15997342 -8715737 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 940 189 19 0 chrY 15997342 15997501 -8715578 + AluSg/x SINE Alu 131 292 -18 279 0 0 0 chrY 15997732 15997763 -8715316 + (A)n Simple_repeat Simple_repeat 1 31 0 715 268 13 21 chrY 15998862 15999097 -8713982 + LTR56-int LTR ERV1 4790 5022 -101 642 264 31 73 chrY 15999197 15999642 -8713437 + LTR56 LTR ERV1 22 426 -11 201 288 0 0 chrY 15999658 15999731 -8713348 + A-rich Low_complexity Low_complexity 3 75 0 528 301 110 10 chrY 16000591 16000900 -8712179 - MER21B LTR ERV1 -107 756 417 641 276 121 26 chrY 16000962 16001302 -8711777 + MER92B LTR ERV1 57 428 -208 3271 180 67 12 chrY 16001315 16002064 -8711015 - L1MA1 LINE L1 -297 6005 5221 3799 259 22 9 chrY 16002134 16003348 -8709731 - L1MA1 LINE L1 -944 5202 3973 3376 99 14 10 chrY 16003355 16003839 -8709240 - LTR15 LTR ERV1 -7 486 1 288 280 0 9 chrY 16003847 16003954 -8709125 - L1M4 LINE L1 -2178 3968 3863 203 0 37 0 chrY 16004218 16004245 -8708834 + (CAA)n Simple_repeat Simple_repeat 2 29 0 671 178 15 37 chrY 16004245 16004380 -8708699 + LTR9 LTR ERV1 49 180 -432 1313 260 18 67 chrY 16004406 16004840 -8708239 + LTR9 LTR ERV1 187 599 -13 2437 231 62 57 chrY 16004856 16005164 -8707915 + MER57-int LTR ERV1 6074 6379 -1158 2158 129 3 0 chrY 16005164 16005467 -8707612 - AluY SINE Alu -7 304 1 2437 231 62 57 chrY 16005467 16005878 -8707201 + MER57-int LTR ERV1 6379 6797 -740 276 239 28 0 chrY 16005880 16005951 -8707128 + LTR54B LTR ERV1 49 121 -377 185 250 16 97 chrY 16005956 16006080 -8706999 - MER5C DNA MER1_type -129 195 82 485 217 54 16 chrY 16006081 16006210 -8706869 + MER57-int LTR ERV1 7404 7537 0 404 185 225 69 chrY 16006499 16006672 -8706407 - MER4A LTR ERV1 -322 342 143 9364 57 3 1 chrY 16006672 16007898 -8705181 - L1P LINE L1 -1929 4217 2989 8588 63 5 0 chrY 16007898 16009786 -8703293 + L1PA4 LINE L1 4260 6152 -3 27 0 0 0 chrY 16009793 16009820 -8703259 + AT_rich Low_complexity Low_complexity 1 27 0 636 219 7 20 chrY 16009829 16009980 -8703099 - MER4A LTR ERV1 -514 150 2 261 169 0 46 chrY 16009992 16010057 -8703022 - MER4A-int LTR ERV1 -5 6593 6532 272 256 0 0 chrY 16010308 16010398 -8702681 + L1MC4 LINE L1 6614 6703 -1339 446 370 26 21 chrY 16010871 16011258 -8701821 - MER4C-int LTR ERV1 -2117 2530 2142 310 243 73 87 chrY 16011904 16012129 -8700950 - MER4C-int LTR ERV1 -2983 4773 4101 279 304 35 26 chrY 16012200 16012315 -8700764 - MER4C-int LTR ERV1 -3309 3492 3377 185 372 11 21 chrY 16012962 16013056 -8700023 - L2 LINE L2 -1134 2180 2088 253 331 35 35 chrY 16013224 16013393 -8699686 - MER4C-int LTR ERV1 -5193 3726 3558 1387 132 5 0 chrY 16014083 16014288 -8698791 + MER9 LTR ERVK 1 206 -305 569 191 0 9 chrY 16014286 16014396 -8698683 + MER9 LTR ERVK 403 511 0 * 16612 110 20 8 chrY 16014396 16016836 -8696243 + HERVK9 LTR ERVK 1 2469 -3447 994 76 0 0 chrY 16016835 16016967 -8696112 + HERVK9 LTR ERVK 2654 2785 -3131 * 1833 56 4 0 chrY 16016968 16017199 -8695880 + HERVK9 LTR ERVK 3710 3941 -1975 * 6676 128 27 3 chrY 16017198 16018226 -8694853 + HERVK9 LTR ERVK 4582 5634 -282 2193 130 10 3 chrY 16018251 16018603 -8694476 + HERVK9 LTR ERVK 5635 5916 0 2840 132 37 33 chrY 16018603 16019112 -8693967 + MER9 LTR ERVK 1 511 0 201 74 0 0 chrY 16020312 16020339 -8692740 + (CA)n Simple_repeat Simple_repeat 2 28 0 459 224 40 44 chrY 16020347 16020719 -8692360 - MER4C-int LTR ERV1 -5995 603 111 312 218 264 9 chrY 16020850 16020960 -8692119 - MER4C LTR ERV1 -27 438 301 858 191 199 15 chrY 16021039 16021301 -8691778 - MER4A LTR ERV1 -336 328 19 270 0 0 0 chrY 16021301 16021331 -8691748 + (TG)n Simple_repeat Simple_repeat 1 30 0 476 231 0 7 chrY 16021331 16021478 -8691601 + (TA)n Simple_repeat Simple_repeat 1 146 0 1863 169 24 0 chrY 16021479 16021775 -8691304 - AluSx SINE Alu -9 303 1 690 259 0 11 chrY 16021801 16021975 -8691104 + MER57A LTR ERV1 96 267 -136 272 333 0 12 chrY 16022331 16022412 -8690667 + MIR SINE MIR 31 110 -152 329 58 19 0 chrY 16022444 16022496 -8690583 + (CAAA)n Simple_repeat Simple_repeat 2 54 0 906 294 13 36 chrY 16022673 16022982 -8690097 + AluJb SINE Alu 11 312 0 843 70 11 59 chrY 16022995 16023182 -8689897 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 1683 176 33 7 chrY 16023211 16023513 -8689566 + AluSg SINE Alu 1 310 0 195 64 43 43 chrY 16023518 16023565 -8689514 + (GAAA)n Simple_repeat Simple_repeat 2 48 0 1104 106 6 6 chrY 16023649 16024000 -8689079 + (TTC)n Simple_repeat Simple_repeat 1 351 0 491 314 88 35 chrY 16024002 16024263 -8688816 + MLT1H LTR MaLR 223 497 -52 487 269 106 35 chrY 16024880 16025162 -8687917 + MER33 DNA MER1_type 1 302 -22 3060 58 15 0 chrY 16026678 16027126 -8685953 + L1P2 LINE L1 4980 5431 -723 1975 180 27 10 chrY 16027138 16027549 -8685530 - L1M1 LINE L1 -4437 3128 2711 6683 261 46 9 chrY 16027556 16029430 -8683649 - L1M1 LINE L1 -4705 2860 918 523 238 82 29 chrY 16029451 16029657 -8683422 - L1M1 LINE L1 -7340 225 9 * 677 259 36 20 chrY 16029650 16029897 -8683182 - L1P4 LINE L1 -501 5665 5415 508 320 56 35 chrY 16029903 16030365 -8682714 + L1PA13 LINE L1 1679 2150 -4637 397 328 83 9 chrY 16030604 16030833 -8682246 + MER67C LTR ERV1 263 508 -202 1716 189 39 33 chrY 16031066 16031425 -8681654 - THE1B LTR MaLR -1 363 3 5228 213 42 12 chrY 16031428 16032494 -8680585 - THE1B-int LTR MaLR 0 1580 483 8307 55 3 2 chrY 16032562 16034418 -8678661 - L1PA4 LINE L1 -1 6154 4301 7743 109 11 0 chrY 16034418 16035501 -8677578 + L1P LINE L1 64 1158 -4988 2022 174 74 4 chrY 16035499 16035939 -8677140 - THE1B-int LTR MaLR -1084 496 45 * 183 170 0 0 chrY 16035964 16036011 -8677068 + (CTG)n Simple_repeat Simple_repeat 2 48 0 * 788 185 0 6 chrY 16036000 16036178 -8676901 + CT-rich Low_complexity Low_complexity 2 178 0 180 143 0 0 chrY 16036179 16036221 -8676858 + (TTC)n Simple_repeat Simple_repeat 1 42 0 347 216 81 18 chrY 16036235 16036346 -8676733 - THE1B-int LTR MaLR -1462 118 1 1479 198 33 49 chrY 16036348 16036421 -8676658 - THE1B LTR MaLR -2 362 289 1956 125 11 0 chrY 16036421 16036822 -8676257 + AluY SINE Alu 1 404 0 1479 198 33 49 chrY 16036822 16037115 -8675964 - THE1B LTR MaLR -75 289 1 1643 305 86 21 chrY 16037392 16038130 -8674949 + L1P3 LINE L1 4 708 -5167 2231 209 30 14 chrY 16038137 16038847 -8674232 + LTR25 LTR ERV1 8 794 0 6255 249 40 19 chrY 16038965 16040704 -8672375 + LTR25-int LTR ERV1 259 2033 -4963 3954 285 19 5 chrY 16040707 16041668 -8671411 + LTR25-int LTR ERV1 2724 3697 -5222 1852 167 7 3 chrY 16041699 16041998 -8671081 - AluSc SINE Alu -1 308 9 497 226 0 0 chrY 16042024 16042126 -8670953 - LTR12 LTR ERV1 -132 582 481 299 270 11 0 chrY 16042128 16042217 -8670862 - LTR30 LTR ERV1 -80 642 553 1514 122 3 137 chrY 16042218 16042547 -8670532 - LTR12 LTR ERV1 -429 285 1 3277 283 14 6 chrY 16042550 16043417 -8669662 + LTR25-int LTR ERV1 3717 4590 -4329 3119 225 37 32 chrY 16043452 16044249 -8668830 + LTR25 LTR ERV1 8 566 -3 822 308 27 64 chrY 16044255 16044629 -8668450 + L1P3 LINE L1 760 1119 -5342 * 1072 225 165 0 chrY 16044620 16044935 -8668144 + L1P LINE L1 4273 4639 -1507 7272 232 77 27 chrY 16044939 16047074 -8666005 - L1P LINE L1 -1878 4268 2028 5503 173 60 9 chrY 16047073 16048330 -8664749 + L1PA10 LINE L1 4170 5495 -673 * 3519 162 35 8 chrY 16049613 16050273 -8662806 + L1PA10 LINE L1 5491 6168 0 878 221 18 31 chrY 16051129 16051355 -8661724 - THE1-int LTR MaLR -1355 225 3 465 284 19 13 chrY 16051435 16051590 -8661489 + MLT1D LTR MaLR 13 168 -337 2886 187 39 0 chrY 16051696 16052231 -8660848 - L1PA10 LINE L1 -141 5990 5435 1082 139 6 0 chrY 16052231 16052396 -8660683 + L1PA10 LINE L1 6001 6167 -1 21 0 0 0 chrY 16052396 16052417 -8660662 + AT_rich Low_complexity Low_complexity 1 21 0 480 198 21 0 chrY 16052949 16053045 -8660034 + MLT1D LTR MaLR 394 491 -14 1306 238 162 11 chrY 16053446 16053816 -8659263 + MSTA LTR MaLR 1 426 -2 1514 276 40 30 chrY 16053885 16054843 -8658236 + L1MA7 LINE L1 4955 5919 -372 6380 71 7 16 chrY 16054843 16057490 -8655589 - L1PA7 LINE L1 -3 6151 3217 4860 40 2 0 chrY 16057483 16058082 -8654997 + L1P LINE L1 3972 4571 -1575 * 377 318 147 4 chrY 16058081 16058333 -8654746 - L1P LINE L1 -816 5330 5043 * 2079 161 29 12 chrY 16058374 16058785 -8654294 - L1PB1 LINE L1 0 6151 5734 9293 273 24 30 chrY 16058793 16059074 -8654005 - L1PB2 LINE L1 -3 6864 6583 9573 55 7 22 chrY 16059074 16061119 -8651960 - L1PA4 LINE L1 -2 6153 4123 9293 273 24 30 chrY 16061119 16061732 -8651347 - L1PB2 LINE L1 -284 6583 5967 1901 142 0 16 chrY 16061732 16062048 -8651031 - AluY SINE Alu 0 311 1 9293 273 24 30 chrY 16062048 16064525 -8648554 - L1PB2 LINE L1 -900 5967 3540 1530 208 10 3 chrY 16064525 16064818 -8648261 - AluSx SINE Alu -17 295 1 9293 273 24 30 chrY 16064818 16065940 -8647139 - L1PB2 LINE L1 -3327 3540 2412 5403 218 66 22 chrY 16065935 16067267 -8645812 - L1PB2 LINE L1 -5470 1393 3 * 3939 295 55 26 chrY 16067276 16069369 -8643710 - L1 LINE L1 -1134 5012 2860 477 272 30 107 chrY 16069460 16069697 -8643382 + L1MA8 LINE L1 5847 6052 -239 186 43 0 0 chrY 16069697 16069720 -8643359 + (TTA)n Simple_repeat Simple_repeat 2 24 0 477 272 30 107 chrY 16069720 16069820 -8643259 + L1MA8 LINE L1 6052 6158 -133 569 282 21 12 chrY 16069827 16070068 -8643011 + L1MA3 LINE L1 5078 5320 -826 5965 106 14 1 chrY 16070071 16071404 -8641675 + L1PA7 LINE L1 4782 6136 -18 34 42 0 0 chrY 16071432 16071480 -8641599 + AT_rich Low_complexity Low_complexity 1 48 0 382 242 199 8 chrY 16071480 16071601 -8641478 + MLT2C2 LTR ERVL 190 334 -63 1675 232 64 26 chrY 16071776 16072311 -8640768 + L1MA3 LINE L1 5314 5868 -437 23 33 0 0 chrY 16072340 16072370 -8640709 + AT_rich Low_complexity Low_complexity 1 30 0 2808 229 49 69 chrY 16072377 16072493 -8640586 - L1PA15 LINE L1 -7 6158 6041 5000 115 71 6 chrY 16072493 16073269 -8639810 + LTR12 LTR ERV1 1 826 0 2808 229 49 69 chrY 16073269 16074422 -8638657 - L1PA15 LINE L1 -124 6041 4917 1492 218 43 40 chrY 16074439 16074527 -8638552 - LTR25 LTR ERV1 0 794 708 2777 7 0 3 chrY 16074527 16074837 -8638242 + AluYa5 SINE Alu 1 309 -2 1492 218 43 40 chrY 16074837 16075120 -8637959 - LTR25 LTR ERV1 -86 708 422 5084 276 20 10 chrY 16075242 16076591 -8636488 - MSTA-int LTR MaLR -287 1364 2 1455 246 74 20 chrY 16076592 16076998 -8636081 - MSTA LTR MaLR 0 428 1 2004 268 87 19 chrY 16077013 16078083 -8634996 + L1M1 LINE L1 4356 5484 -744 757 381 32 12 chrY 16078222 16078629 -8634450 + L1PA15 LINE L1 95 509 -6278 241 396 20 13 chrY 16078656 16078805 -8634274 + L1PA15 LINE L1 572 721 -6066 2245 285 54 7 chrY 16078942 16079151 -8633928 + L1PA15 LINE L1 3698 3896 -2901 509 55 14 0 chrY 16079151 16079224 -8633855 + (TAGA)n Simple_repeat Simple_repeat 3 76 0 2245 285 54 7 chrY 16079224 16079955 -8633124 + L1PA15 LINE L1 3896 4682 -2115 795 283 17 0 chrY 16079956 16080186 -8632893 + AluJb SINE Alu 71 304 -8 2274 263 37 9 chrY 16080194 16080863 -8632216 + L1PA15 LINE L1 6001 6688 -128 4826 192 35 22 chrY 16080865 16081818 -8631261 + L1PA8 LINE L1 10 974 -5487 8858 157 19 8 chrY 16081831 16083419 -8629660 + L1PA8 LINE L1 1747 3353 -3108 12218 141 19 1 chrY 16083419 16086298 -8626781 + L1PA8 LINE L1 3564 6487 0 518 219 15 7 chrY 16086298 16086428 -8626651 + L1PA15 LINE L1 6671 6808 -8 1253 269 43 48 chrY 16086430 16087108 -8625971 + L1PB4 LINE L1 5479 6153 -3 764 234 117 0 chrY 16087130 16087216 -8625863 + L1M3 LINE L1 5328 5403 -780 1555 84 0 0 chrY 16087216 16087431 -8625648 + L1PA4 LINE L1 5940 6154 -1 764 234 117 0 chrY 16087431 16087592 -8625487 + L1M3 LINE L1 5403 5604 -579 261 264 0 0 chrY 16087617 16087670 -8625409 + AluSp/q SINE Alu 154 206 -97 1021 141 30 10 chrY 16087670 16087868 -8625211 + L1PA8A LINE L1 5277 5478 -653 3483 228 22 6 chrY 16087868 16088667 -8624412 - L1PB3 LINE L1 -58 6812 6001 4635 248 60 60 chrY 16088908 16089682 -8623397 - L1PB3 LINE L1 -948 5914 5142 1792 162 3 0 chrY 16089682 16089978 -8623101 - AluSp SINE Alu -15 298 2 4635 248 60 60 chrY 16089978 16091448 -8621631 - L1PB3 LINE L1 -1720 5142 3669 1278 196 53 7 chrY 16091507 16091840 -8621239 - L1PA13 LINE L1 -13 6118 5753 484 170 0 11 chrY 16091906 16092000 -8621079 - L1PA4 LINE L1 -1 6154 6062 1513 270 58 37 chrY 16092000 16092490 -8620589 - L1PB3 LINE L1 -3348 3514 3005 1503 170 19 70 chrY 16092490 16092802 -8620277 + AluSc SINE Alu 1 296 -13 1513 270 58 37 chrY 16092802 16092986 -8620093 - L1PB3 LINE L1 -3857 3005 2826 328 323 109 18 chrY 16093008 16093197 -8619882 - L1PB3 LINE L1 -4130 2733 2518 180 0 0 0 chrY 16093197 16093217 -8619862 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 328 323 109 18 chrY 16093217 16093256 -8619823 - L1PB3 LINE L1 -4345 2518 2484 1774 310 34 29 chrY 16093359 16094117 -8618962 - L1PA16 LINE L1 -2 6164 5403 * 41737 44 21 2 chrY 16094116 16100145 -8612934 - L1PA2 LINE L1 -3 6152 3 2011 263 43 25 chrY 16100158 16100973 -8612106 - L1 LINE L1 -745 5401 4572 414 146 24 24 chrY 16100973 16101055 -8612024 + MER4A LTR ERV1 17 98 -566 1277 180 19 25 chrY 16101055 16101377 -8611702 + MER4A LTR ERV1 261 650 -14 616 208 114 16 chrY 16101383 16101638 -8611441 - L1 LINE L1 -1563 4583 4304 20708 204 23 21 chrY 16101654 16106806 -8606273 - L1PA10 LINE L1 -9 6474 971 315 0 0 0 chrY 16106806 16106841 -8606238 + (TG)n Simple_repeat Simple_repeat 2 36 0 20708 204 23 21 chrY 16106841 16107811 -8605268 - L1PA10 LINE L1 -5512 971 4 2686 229 50 47 chrY 16107807 16108130 -8604949 - L1 LINE L1 -1826 4320 4000 * 2076 145 10 0 chrY 16108130 16108433 -8604646 - AluSp SINE Alu -7 306 1 2686 229 50 47 chrY 16108433 16108921 -8604158 - L1 LINE L1 -2146 4000 3515 1879 155 7 0 chrY 16108921 16109217 -8603862 + AluSp SINE Alu 1 298 -15 2686 229 50 47 chrY 16109217 16109427 -8603652 - L1 LINE L1 -2631 3515 3291 1590 186 116 13 chrY 16109427 16109815 -8603264 + MSTA LTR MaLR 1 428 0 2686 229 50 47 chrY 16109815 16109904 -8603175 - L1 LINE L1 -2855 3291 3204 1576 184 21 32 chrY 16109915 16110289 -8602790 - L1PB1 LINE L1 0 6867 6498 278 151 0 99 chrY 16110294 16110486 -8602593 + (TATATG)n Simple_repeat Simple_repeat 4 176 0 231 233 22 22 chrY 16110517 16110607 -8602472 + L1MC4 LINE L1 6614 6703 -1339 948 172 0 0 chrY 16110624 16110873 -8602206 + (TATG)n Simple_repeat Simple_repeat 1 249 0 499 240 22 28 chrY 16110874 16111053 -8602026 + (CATA)n Simple_repeat Simple_repeat 3 180 0 267 178 20 46 chrY 16111085 16111237 -8601842 + (CATATA)n Simple_repeat Simple_repeat 5 152 0 9789 236 61 24 chrY 16111243 16114174 -8598905 - L1PB1 LINE L1 -360 6507 3687 2059 154 7 0 chrY 16114174 16114480 -8598599 - AluSp SINE Alu -5 308 1 9789 236 61 24 chrY 16114480 16117651 -8595428 - L1PB1 LINE L1 -3180 3687 3 2411 261 51 32 chrY 16117676 16119405 -8593674 - L1 LINE L1 -2936 4629 2871 1228 201 34 12 chrY 16119417 16119740 -8593339 + L1PA13 LINE L1 2258 2587 -3559 7744 242 35 41 chrY 16119745 16120969 -8592110 + L1PA13 LINE L1 2430 3660 -2503 372 111 0 0 chrY 16120969 16121032 -8592047 + (CA)n Simple_repeat Simple_repeat 2 64 0 7744 242 35 41 chrY 16121032 16121894 -8591185 + L1PA13 LINE L1 3660 4526 -1637 2087 128 0 3 chrY 16121894 16122190 -8590889 - AluSc SINE Alu -14 295 1 7744 242 35 41 chrY 16122190 16123545 -8589534 + L1PA13 LINE L1 4526 5849 -314 1958 237 94 25 chrY 16123632 16124664 -8588415 + L1PB1 LINE L1 3345 4305 -1846 1947 58 0 0 chrY 16124664 16124906 -8588173 + L1PA5 LINE L1 5910 6151 -3 1958 237 94 25 chrY 16124906 16125851 -8587228 + L1PB1 LINE L1 4305 5668 -483 1374 179 12 0 chrY 16125853 16126105 -8586974 + L1PB1 LINE L1 5877 6131 -20 578 278 123 25 chrY 16126129 16126413 -8586666 + L1M1 LINE L1 91 402 -7163 5161 254 54 43 chrY 16126418 16128015 -8585064 - MER52A LTR ERV1 0 1755 59 234 277 15 0 chrY 16128365 16128430 -8584649 - MER52A LTR ERV1 -1689 66 1 3078 287 71 49 chrY 16128431 16128693 -8584386 + L1M1 LINE L1 405 660 -6905 187 54 54 0 chrY 16128693 16128730 -8584349 + A-rich Low_complexity Low_complexity 2 40 0 3078 287 71 49 chrY 16128730 16129327 -8583752 + L1M1 LINE L1 660 1304 -6261 1057 132 33 47 chrY 16129327 16129540 -8583539 + L1PA13 LINE L1 5950 6159 -4 3078 287 71 49 chrY 16129540 16129983 -8583096 + L1M1 LINE L1 1304 1736 -5829 475 57 171 0 chrY 16129982 16130052 -8583027 + L1P5 LINE L1 5562 5643 -508 * 2769 247 55 38 chrY 16130056 16130980 -8582099 + MST-int LTR MaLR 115 1054 -597 813 230 63 10 chrY 16131025 16131510 -8581569 + L1P4 LINE L1 4977 5484 -681 4499 269 29 9 chrY 16131522 16132796 -8580283 + L1PA12 LINE L1 11 1309 -6272 3149 60 0 106 chrY 16132796 16133297 -8579782 + LTR7 LTR ERV1 1 448 -2 864 130 7 0 chrY 16133299 16133437 -8579642 + HERVH LTR ERV1 1 139 -7574 39132 52 22 5 chrY 16133466 16134169 -8578910 - L1PA3 LINE L1 0 6155 5466 2878 9 0 6 chrY 16134169 16134489 -8578590 - AluYb8 SINE Alu 0 318 1 39132 52 22 5 chrY 16134489 16139851 -8573228 - L1PA3 LINE L1 -689 5466 6 14377 173 19 45 chrY 16139857 16144218 -8568861 + HERVH LTR ERV1 124 3995 -3210 2376 107 1 4 chrY 16144246 16144604 -8568475 + HERVH LTR ERV1 3953 4316 -2749 * 24462 82 0 3 chrY 16144602 16148072 -8565007 + HERVH LTR ERV1 4252 7713 0 3220 54 2 104 chrY 16148072 16148571 -8564508 + LTR7 LTR ERV1 1 448 -2 885 223 21 60 chrY 16148609 16148892 -8564187 + L1PA12 LINE L1 2391 2662 -4912 894 256 65 91 chrY 16148895 16149549 -8563530 - LTR9B LTR ERV1 0 612 1 1104 230 15 15 chrY 16149549 16149810 -8563269 - HUERS-P3 LTR ERV1 0 8919 8659 640 184 11 50 chrY 16150133 16150312 -8562767 - LTR9B-int LTR ERV1 -3691 4125 3954 3166 214 38 56 chrY 16150337 16151153 -8561926 - LTR9B-int LTR ERV1 -1957 6962 6162 * 3386 176 40 12 chrY 16151138 16151797 -8561282 - LTR9B-int LTR ERV1 -3342 5577 4901 526 157 0 39 chrY 16151799 16151901 -8561178 - LTR9B-int LTR ERV1 -4238 4681 4584 6297 218 39 18 chrY 16151959 16154136 -8558943 - LTR9B-int LTR ERV1 -5349 2069 746 1057 251 22 11 chrY 16154179 16154454 -8558625 - LTR9B-int LTR ERV1 -8378 541 264 907 276 68 92 chrY 16154560 16155122 -8557957 - LTR9B LTR ERV1 0 612 65 1969 259 8 10 chrY 16155130 16155737 -8557342 + L1PA12 LINE L1 2960 3565 -4019 6491 107 19 39 chrY 16155746 16161907 -8551172 + L1PA6 LINE L1 11 6154 0 732 249 26 23 chrY 16161972 16162237 -8550842 + L1PBa LINE L1 1649 1914 -4949 1322 233 176 21 chrY 16162246 16162980 -8550099 + L1PBa LINE L1 2210 3054 -3808 1414 199 0 4 chrY 16162981 16163242 -8549837 - AluSx SINE Alu -5 307 48 1059 241 15 9 chrY 16163242 16163582 -8549497 + L1 LINE L1 3046 3387 -3475 1363 248 44 24 chrY 16163584 16164173 -8548906 + L1 LINE L1 3473 4073 -2789 272 65 65 0 chrY 16164204 16164250 -8548829 + LTR8A LTR ERV1 2 50 -677 * 1080 217 16 24 chrY 16164248 16164497 -8548582 + LTR8 LTR ERV1 445 691 0 2076 171 6 15 chrY 16164497 16164964 -8548115 + HUERS-P1 LTR ERV1 1 393 -5870 4025 124 13 2 chrY 16164964 16165592 -8547487 + PABL_A LTR ERV1 26 660 0 652 228 0 0 chrY 16165656 16165783 -8547296 + PABL_A-int LTR ERV1 115 241 -4774 5273 118 49 5 chrY 16165787 16166825 -8546254 + PABL_A-int LTR ERV1 3803 4950 -65 3737 130 1 62 chrY 16166880 16167556 -8545523 + PABL_A LTR ERV1 26 660 0 1863 169 26 31 chrY 16167556 16167946 -8545133 + HUERS-P1 LTR ERV1 251 638 -5625 1447 251 57 26 chrY 16167946 16168436 -8544643 + LTR10B LTR ERV1 1 505 0 3363 252 85 43 chrY 16168460 16169863 -8543216 + HERVI LTR ERV1 26 1486 -6299 * 8981 263 39 19 chrY 16169859 16172828 -8540251 + HERVI LTR ERV1 4756 7784 -1 1224 198 150 86 chrY 16172831 16173345 -8539734 + LTR10B LTR ERV1 1 547 0 6483 122 20 28 chrY 16173345 16174440 -8538639 + HUERS-P1 LTR ERV1 635 1720 -4543 4496 191 35 15 chrY 16174463 16174682 -8538397 + L1PB3 LINE L1 4683 4896 -1258 2058 114 0 0 chrY 16174682 16174954 -8538125 + AluY SINE Alu 1 272 -39 4496 191 35 15 chrY 16174954 16176160 -8536919 + L1PB3 LINE L1 4896 6152 -2 1479 197 9 34 chrY 16176433 16176753 -8536326 + AluJb SINE Alu 1 312 0 217 245 0 19 chrY 16176753 16176796 -8536283 + GA-rich Low_complexity Low_complexity 11 54 0 2879 198 58 5 chrY 16178236 16179029 -8534050 + L1MA4 LINE L1 5424 6299 -1 1248 45 0 0 chrY 16179424 16179579 -8533500 + (CTATA)n Simple_repeat Simple_repeat 2 156 0 249 171 61 49 chrY 16180234 16180316 -8532763 + L1MA4A LINE L1 4256 4338 -1808 413 101 0 14 chrY 16182467 16182536 -8530543 + (CA)n Simple_repeat Simple_repeat 2 69 0 1520 181 6 62 chrY 16182582 16182903 -8530176 - AluJb SINE Alu -9 303 1 1497 169 59 19 chrY 16183057 16183429 -8529650 - L1MB3 LINE L1 0 6183 5797 1817 139 4 0 chrY 16183430 16183688 -8529391 + AluSg SINE Alu 1 259 -51 1836 31 0 18 chrY 16183698 16183926 -8529153 + L1PA3 LINE L1 5932 6155 0 21 36 0 0 chrY 16184018 16184046 -8529033 + AT_rich Low_complexity Low_complexity 1 28 0 1567 194 3 7 chrY 16184118 16184412 -8528667 + AluJb SINE Alu 1 293 -19 3612 183 92 6 chrY 16184486 16185782 -8527297 + L1MA4A LINE L1 4851 6259 -44 1870 186 3 0 chrY 16185782 16186093 -8526986 + AluJb SINE Alu 1 312 0 263 81 46 33 chrY 16186100 16186172 -8526907 + L1MA5A LINE L1 6215 6285 -12 248 294 125 22 chrY 16186493 16186629 -8526450 + MIR SINE MIR 96 245 -17 38891 68 2 3 chrY 16188346 16194501 -8518578 - L1PA4 LINE L1 0 6155 11 2135 278 70 30 chrY 16196706 16197706 -8515373 + MSTD-int LTR MaLR 284 1406 -329 2205 125 0 3 chrY 16197706 16198010 -8515069 + AluSc SINE Alu 1 303 -6 2135 278 70 30 chrY 16198010 16198335 -8514744 + MSTD-int LTR MaLR 1406 1716 -19 1244 220 104 25 chrY 16198356 16198720 -8514359 + MSTD LTR MaLR 4 396 0 297 0 0 0 chrY 16201803 16201836 -8511243 + (TG)n Simple_repeat Simple_repeat 2 34 0 1072 205 115 0 chrY 16202013 16202301 -8510778 - MER46B DNA MER2_type 0 236 41 330 111 0 0 chrY 16206223 16206277 -8506802 + Alu SINE Alu 248 301 -1 4754 248 56 9 chrY 16206493 16208132 -8504947 + L1 LINE L1 3669 5384 -762 1139 251 101 47 chrY 16208719 16209429 -8503650 + L1MB2 LINE L1 815 1478 -4906 1489 205 0 4 chrY 16209429 16209692 -8503387 - AluSq SINE Alu -45 268 7 1139 251 101 47 chrY 16209692 16210078 -8503001 + L1MB2 LINE L1 1478 1842 -4542 485 267 19 0 chrY 16210184 16210289 -8502790 + FLAM_A SINE Alu 4 110 -32 789 238 64 42 chrY 16210304 16210481 -8502598 + L1MB2 LINE L1 2041 2213 -4171 1862 145 3 40 chrY 16210481 16210778 -8502301 + AluSq SINE Alu 1 286 -27 198 0 0 0 chrY 16210778 16210800 -8502279 + (TA)n Simple_repeat Simple_repeat 2 23 0 789 238 64 42 chrY 16210800 16211025 -8502054 + L1MB2 LINE L1 2212 2453 -3931 377 184 0 0 chrY 16211060 16211136 -8501943 + L1MB2 LINE L1 2505 2580 -3802 594 214 20 97 chrY 16211150 16211543 -8501536 + L1MB2 LINE L1 3200 3562 -2820 1677 215 0 9 chrY 16211550 16211885 -8501194 - MER1B DNA MER1_type -7 332 1 3012 253 96 56 chrY 16211885 16213697 -8499382 + L1MB2 LINE L1 3556 5438 -944 2307 203 22 2 chrY 16213819 16214361 -8498718 + L1MB2 LINE L1 5490 6042 -506 234 139 0 0 chrY 16214420 16214463 -8498616 - L1MB4 LINE L1 -2 6178 6136 979 209 122 12 chrY 16214478 16214799 -8498280 + L1MB2 LINE L1 6049 6404 -3 2030 233 101 44 chrY 16214814 16215763 -8497316 + L1MB3 LINE L1 5408 6411 -8 488 56 14 0 chrY 16215776 16215848 -8497231 + (TAAAA)n Simple_repeat Simple_repeat 5 77 0 1255 202 12 24 chrY 16217408 16217660 -8495419 + AluJo SINE Alu 16 264 -48 186 43 0 0 chrY 16217660 16217683 -8495396 + (TAA)n Simple_repeat Simple_repeat 2 24 0 35 0 0 0 chrY 16219233 16219268 -8493811 + AT_rich Low_complexity Low_complexity 1 35 0 2106 149 0 3 chrY 16220385 16220751 -8492328 - AluSx SINE Alu 0 369 5 299 98 0 0 chrY 16221314 16221406 -8491673 + AluJo SINE Alu 241 332 0 2228 123 0 3 chrY 16221927 16222235 -8490844 + AluSx SINE Alu 1 307 -5 2025 117 7 0 chrY 16224370 16224706 -8488373 + AluSc SINE Alu 1 338 0 1842 160 0 3 chrY 16225550 16225850 -8487229 + AluSx SINE Alu 1 299 -13 24590 74 20 18 chrY 16227467 16231058 -8482021 - L1P LINE L1 -2546 3600 3 4119 201 56 7 chrY 16231077 16232870 -8480209 + L1MA2 LINE L1 4431 6304 0 318 214 169 70 chrY 16232946 16233189 -8479890 + MLT1F LTR MaLR 276 542 0 186 328 62 0 chrY 16233226 16233290 -8479789 - MIR SINE MIR -143 119 52 238 324 81 34 chrY 16233378 16233526 -8479553 - MER5A DNA MER1_type 0 189 35 25 31 0 0 chrY 16234232 16234264 -8478815 + AT_rich Low_complexity Low_complexity 1 32 0 231 268 144 0 chrY 16234382 16234479 -8478600 + L1ME3A LINE L1 5441 5551 -615 602 269 86 0 chrY 16234590 16234858 -8478221 + L1ME3A LINE L1 5683 5973 -197 405 238 106 12 chrY 16234958 16235118 -8477961 + L1ME3A LINE L1 5995 6169 -1 345 125 0 0 chrY 16235134 16235190 -8477889 + (CAATA)n Simple_repeat Simple_repeat 3 58 0 9167 174 40 21 chrY 16235355 16238216 -8474863 + L1PA8 LINE L1 10 2978 -3483 11290 128 10 17 chrY 16238225 16240878 -8472201 + L1PA8 LINE L1 3819 6486 -1 2128 135 0 0 chrY 16241034 16241331 -8471748 + AluSc SINE Alu 1 297 -12 391 338 68 36 chrY 16242021 16242299 -8470780 + MLT1H LTR MaLR 37 323 -226 21 0 0 0 chrY 16242594 16242615 -8470464 + AT_rich Low_complexity Low_complexity 1 21 0 230 329 0 25 chrY 16243706 16243785 -8469294 + L2 LINE L2 3195 3271 -1 339 263 109 7 chrY 16245331 16245468 -8467611 - L1MB2 LINE L1 -10 6161 6011 2086 240 63 38 chrY 16245509 16246283 -8466796 + L1MC2 LINE L1 3543 4339 -1807 1058 174 43 17 chrY 16246283 16246513 -8466566 + MER46A DNA MER2_type 1 236 0 2086 240 63 38 chrY 16246513 16246551 -8466528 + L1MC2 LINE L1 4339 4375 -1771 1087 226 26 19 chrY 16246567 16246833 -8466246 - MSTC LTR MaLR 0 428 161 315 0 0 0 chrY 16246898 16246933 -8466146 + (CA)n Simple_repeat Simple_repeat 2 36 0 * 351 0 0 0 chrY 16246932 16246971 -8466108 + (GA)n Simple_repeat Simple_repeat 2 40 0 5959 250 62 32 chrY 16247043 16250159 -8462920 + L1MA4 LINE L1 1 3239 -3970 1236 267 7 3 chrY 16250159 16250447 -8462632 + AluJo SINE Alu 2 290 -12 24 0 0 0 chrY 16250501 16250525 -8462554 + AT_rich Low_complexity Low_complexity 1 24 0 786 268 25 7 chrY 16250540 16250816 -8462263 + L1MA4 LINE L1 3283 3563 -3645 2222 179 39 5 chrY 16250817 16251231 -8461848 + MSTA LTR MaLR 1 428 0 5900 227 31 1 chrY 16251232 16252520 -8460559 + MSTA-int LTR MaLR 3 1329 -322 * 7077 204 59 18 chrY 16252518 16252703 -8460376 + L1MA4 LINE L1 4328 4504 -2858 2075 128 7 0 chrY 16252703 16252991 -8460088 - AluSp SINE Alu -23 290 1 7077 204 59 18 chrY 16252991 16255710 -8457369 + L1MA4 LINE L1 4504 7354 -8 904 228 60 14 chrY 16255732 16256017 -8457062 + L1MC2 LINE L1 4456 4753 -1393 5623 89 15 14 chrY 16256017 16257276 -8455803 + SVA Other Other 11 1386 0 600 201 36 0 chrY 16257280 16257419 -8455660 + MST-int LTR MaLR 336 479 -1172 * 626 223 115 22 chrY 16257418 16257687 -8455392 + L1MC2 LINE L1 4745 5038 -1108 205 222 14 14 chrY 16257720 16257792 -8455287 + (TA)n Simple_repeat Simple_repeat 1 72 0 3814 198 50 57 chrY 16257819 16257880 -8455199 + L1MC2 LINE L1 5029 5089 -1255 1884 120 3 93 chrY 16257880 16258204 -8454875 - AluSc SINE Alu -14 295 1 3814 198 50 57 chrY 16258204 16259264 -8453815 + L1MC2 LINE L1 5089 6137 -207 2157 105 17 0 chrY 16259264 16259559 -8453520 + AluY SINE Alu 1 300 -11 3814 198 50 57 chrY 16259559 16259758 -8453321 + L1MC2 LINE L1 6137 6336 -8 26 0 0 0 chrY 16260326 16260352 -8452727 + AT_rich Low_complexity Low_complexity 1 26 0 1807 143 48 20 chrY 16260866 16261159 -8451920 + AluSg1 SINE Alu 1 301 -8 1702 146 18 4 chrY 16261999 16262273 -8450806 - AluSg SINE Alu -30 280 3 424 202 0 0 chrY 16262903 16262987 -8450092 + L1MA3 LINE L1 5824 5907 -398 534 186 0 29 chrY 16265920 16266022 -8447057 + FLAM_C SINE Alu 34 132 -11 301 211 83 46 chrY 16266401 16266510 -8446569 + MER31-int LTR ERV1 3171 3283 -1653 500 239 15 31 chrY 16266644 16266774 -8446305 - FLAM_A SINE Alu -5 128 1 338 275 59 78 chrY 16266803 16267081 -8445998 + MER31-int LTR ERV1 3391 3673 -1263 4730 82 2 0 chrY 16267081 16267701 -8445378 - L1PA6 LINE L1 0 6154 5534 1793 191 0 7 chrY 16267706 16268005 -8445074 + AluSx SINE Alu 1 297 -15 338 275 59 78 chrY 16268005 16268094 -8444985 + MER31-int LTR ERV1 3677 3757 -1179 1350 115 0 115 chrY 16268128 16268381 -8444698 - AluSg/x SINE Alu 0 312 89 356 306 32 0 chrY 16268438 16268562 -8444517 + MER31-int LTR ERV1 3817 3944 -992 835 201 97 7 chrY 16268600 16268948 -8444131 + MSTB1 LTR MaLR 1 428 -4 384 335 19 5 chrY 16268952 16269161 -8443918 + MER31-int LTR ERV1 3989 4200 -736 395 148 22 0 chrY 16269277 16269414 -8443665 + CT-rich Low_complexity Low_complexity 1 140 0 933 250 148 11 chrY 16269416 16269680 -8443399 - AluJo SINE Alu -1 301 2 328 218 150 8 chrY 16269704 16269837 -8443242 + MER110A LTR ERV1 61 212 -256 832 223 44 74 chrY 16269840 16270210 -8442869 - MLT1A2 LTR MaLR 0 467 15 368 244 65 8 chrY 16272140 16272263 -8440816 + FRAM SINE Alu 34 163 -3 1516 96 121 0 chrY 16272269 16272508 -8440571 + AluY SINE Alu 3 270 -41 23 68 0 0 chrY 16272960 16273004 -8440075 + AT_rich Low_complexity Low_complexity 1 44 0 2400 107 0 0 chrY 16273415 16273748 -8439331 + AluY SINE Alu 2 334 0 25 31 0 0 chrY 16274241 16274273 -8438806 + AT_rich Low_complexity Low_complexity 1 32 0 926 228 104 23 chrY 16274739 16275133 -8437946 + LTR37A LTR ERV1 1 426 0 22 80 0 0 chrY 16275236 16275286 -8437793 + AT_rich Low_complexity Low_complexity 1 50 0 315 0 0 0 chrY 16276595 16276630 -8436449 + (TG)n Simple_repeat Simple_repeat 2 36 0 923 187 18 6 chrY 16276635 16276848 -8436231 + AluSg/x SINE Alu 110 324 0 441 242 31 31 chrY 16276907 16277035 -8436044 + FLAM_C SINE Alu 3 130 -13 1399 184 8 104 chrY 16277700 16278074 -8435005 + MER2 DNA MER2_type 1 338 -7 600 228 6 13 chrY 16278084 16278242 -8434837 - MER39 LTR ERV1 -23 684 528 633 194 190 55 chrY 16278253 16278690 -8434389 + LTR54B LTR ERV1 1 496 -2 1425 219 4 0 chrY 16278739 16279008 -8434071 + AluJb SINE Alu 40 309 -3 716 259 44 9 chrY 16279011 16279239 -8433840 - MER39 LTR ERV1 -196 511 276 1892 157 3 13 chrY 16279260 16279560 -8433519 + AluSq SINE Alu 17 313 0 1846 145 35 0 chrY 16279839 16280128 -8432951 + AluSq SINE Alu 1 299 -14 2721 169 70 53 chrY 16280391 16281103 -8431976 - LTR8A LTR ERV1 0 727 4 45 62 0 0 chrY 16281124 16281204 -8431875 + AT_rich Low_complexity Low_complexity 1 80 0 989 228 29 40 chrY 16281319 16281679 -8431400 - MLT1C LTR MaLR -12 455 53 573 197 8 0 chrY 16281723 16281845 -8431234 - LTR37A LTR ERV1 -223 203 81 25 51 0 0 chrY 16282753 16282792 -8430287 + AT_rich Low_complexity Low_complexity 1 39 0 247 162 0 0 chrY 16284197 16284234 -8428845 - MER7A DNA MER2_type -3 333 297 1647 199 27 3 chrY 16284241 16284577 -8428502 - MER7A DNA MER2_type -4 342 1 2305 238 63 56 chrY 16284583 16285018 -8428061 + L1MB5 LINE L1 4218 4648 -1526 1957 95 4 0 chrY 16285018 16285270 -8427809 - AluSg SINE Alu -19 291 39 2305 238 63 56 chrY 16285270 16286430 -8426649 + L1MB5 LINE L1 4648 5828 -346 329 206 11 65 chrY 16286431 16286523 -8426556 + MER2 DNA MER2_type 1 87 -258 667 217 58 32 chrY 16286528 16286717 -8426362 + AluJb SINE Alu 87 280 -32 1316 169 29 40 chrY 16286721 16286999 -8426080 + MER2 DNA MER2_type 71 345 0 408 155 0 0 chrY 16287083 16287154 -8425925 + (CATA)n Simple_repeat Simple_repeat 3 73 0 311 308 44 0 chrY 16287154 16287245 -8425834 - L1MC4 LINE L1 -1339 6703 6609 237 195 24 12 chrY 16288853 16288935 -8424144 + CT-rich Low_complexity Low_complexity 2 84 0 207 0 0 0 chrY 16289495 16289518 -8423561 + (T)n Simple_repeat Simple_repeat 1 23 0 33 0 0 0 chrY 16290050 16290083 -8422996 + AT_rich Low_complexity Low_complexity 1 33 0 483 247 70 9 chrY 16290345 16290589 -8422490 - L1M4c LINE L1 -3608 3036 2777 310 264 141 37 chrY 16290633 16290796 -8422283 - L1M4c LINE L1 -4226 2420 2241 697 277 35 11 chrY 16290798 16291058 -8422021 - L1M4c LINE L1 -4489 2157 1892 * 1261 228 92 51 chrY 16291054 16291681 -8421398 - L1M4c LINE L1 -4871 1671 1019 570 253 173 33 chrY 16291683 16291984 -8421095 - MER92A LTR ERV1 -13 399 57 323 236 127 69 chrY 16292055 16292330 -8420749 - L1M4c LINE L1 -5520 1022 732 1449 182 47 10 chrY 16292337 16292633 -8420446 - MER2 DNA MER2_type 0 345 39 254 270 92 86 chrY 16292705 16292868 -8420211 - L1M4c LINE L1 -5842 700 537 321 326 46 23 chrY 16293038 16293256 -8419823 - L1M4c LINE L1 -6245 297 75 667 231 27 53 chrY 16293933 16294158 -8418921 + MLT1D LTR MaLR 1 219 -286 34 55 0 0 chrY 16294164 16294219 -8418860 + AT_rich Low_complexity Low_complexity 1 55 0 228 285 53 40 chrY 16294272 16294423 -8418656 + MLT1D LTR MaLR 193 345 -160 264 279 47 0 chrY 16294433 16294519 -8418560 + MER21B LTR ERV1 17 106 -757 * 343 236 0 14 chrY 16294517 16294589 -8418490 + MER21B LTR ERV1 19 89 -774 2155 261 95 14 chrY 16294593 16295307 -8417772 + MER21B LTR ERV1 44 815 -48 1989 96 68 7 chrY 16296653 16296933 -8416146 + AluY SINE Alu 1 297 -14 1033 227 112 11 chrY 16296959 16297333 -8415746 - Charlie1 DNA MER1_type -531 2230 1819 3333 102 18 20 chrY 16297358 16297857 -8415222 + L1PA7 LINE L1 5657 6154 0 392 305 34 23 chrY 16298045 16298222 -8414857 + HERVL40 LTR ERVL 4358 4536 -994 1813 111 0 11 chrY 16298279 16298540 -8414539 - AluY SINE Alu -53 258 1 762 223 51 128 chrY 16298699 16299090 -8413989 + MLT1D LTR MaLR 1 361 -144 437 276 13 26 chrY 16299117 16299273 -8413806 - LTR40a LTR ERVL -330 189 36 406 264 0 0 chrY 16299274 16299384 -8413695 - HERVL40 LTR ERVL -19 5511 5402 400 285 23 41 chrY 16300466 16300638 -8412441 - HERVL40 LTR ERVL -1334 4196 4028 346 344 113 4 chrY 16300985 16301241 -8411838 - L1M4 LINE L1 -6243 299 16 36440 77 16 9 chrY 16301341 16307448 -8405631 - L1PA5 LINE L1 -2 6152 4 2280 107 0 0 chrY 16307541 16307839 -8405240 + AluY SINE Alu 1 298 -13 1012 231 9 80 chrY 16309181 16309505 -8403574 - AluJo SINE Alu -1 301 1 231 261 0 0 chrY 16310853 16310899 -8402180 - L2 LINE L2 -10 3303 3258 22 0 0 0 chrY 16311075 16311097 -8401982 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chrY 16311812 16311833 -8401246 + AT_rich Low_complexity Low_complexity 1 21 0 1117 235 85 22 chrY 16311833 16312105 -8400974 - AluJb SINE Alu -13 289 1 442 256 74 29 chrY 16315401 16315713 -8397366 - L1MC5 LINE L1 -184 7777 7452 24 32 0 0 chrY 16315736 16315767 -8397312 + AT_rich Low_complexity Low_complexity 1 31 0 219 132 0 75 chrY 16315844 16315897 -8397182 + (TTTTA)n Simple_repeat Simple_repeat 1 49 0 407 258 77 55 chrY 16316200 16316382 -8396697 - MIR SINE MIR 0 262 77 252 0 0 0 chrY 16317101 16317129 -8395950 + (TG)n Simple_repeat Simple_repeat 2 29 0 2001 158 0 0 chrY 16320006 16320316 -8392763 - AluSg SINE Alu 0 310 1 1413 205 36 23 chrY 16320736 16321043 -8392036 + AluJo SINE Alu 1 311 -1 31 0 0 0 chrY 16321277 16321308 -8391771 + AT_rich Low_complexity Low_complexity 1 31 0 189 65 22 43 chrY 16321480 16321526 -8391553 + (TA)n Simple_repeat Simple_repeat 1 45 0 191 320 13 39 chrY 16321901 16321979 -8391100 + MIR SINE MIR 86 161 -101 365 250 54 27 chrY 16323460 16323572 -8389507 - MER5A DNA MER1_type -73 116 2 363 44 0 0 chrY 16325480 16325525 -8387554 + (TA)n Simple_repeat Simple_repeat 2 46 0 315 0 0 0 chrY 16326999 16327034 -8386045 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 2809 150 50 35 chrY 16327587 16328106 -8384973 + MER1A DNA MER1_type 1 527 0 323 296 123 51 chrY 16328158 16328411 -8384668 + L1M3 LINE L1 2 272 -6270 606 237 114 36 chrY 16328439 16328838 -8384241 + L1M3 LINE L1 3412 3851 -2793 1693 169 14 3 chrY 16328838 16329128 -8383951 + AluJo SINE Alu 1 293 -19 606 237 114 36 chrY 16329128 16329175 -8383904 + L1M3 LINE L1 3851 3893 -2751 6114 91 11 16 chrY 16329182 16329448 -8383631 - L1PA7 LINE L1 0 6154 5888 1584 171 47 7 chrY 16329448 16329722 -8383357 - AluSc SINE Alu -21 288 4 6114 91 11 16 chrY 16329722 16330589 -8382490 - L1PA7 LINE L1 -266 5888 5042 1465 103 0 0 chrY 16330589 16330792 -8382287 - L1P3 LINE L1 -385 5769 5567 660 276 0 0 chrY 16330852 16331026 -8382053 + AluJb SINE Alu 138 311 -1 229 212 91 0 chrY 16331063 16331129 -8381950 + L1M3 LINE L1 4094 4165 -2479 * 314 190 36 66 chrY 16331124 16331261 -8381818 + L1M3 LINE L1 4379 4511 -2133 951 202 147 0 chrY 16331269 16331467 -8381612 - AluJb SINE Alu -85 227 1 406 99 0 28 chrY 16331527 16331598 -8381481 + L1MA1 LINE L1 6228 6296 -6 998 265 109 33 chrY 16331948 16332691 -8380388 + L1M3 LINE L1 4823 5668 -976 290 140 0 0 chrY 16332894 16332944 -8380135 + L1M3 LINE L1 5880 5929 -752 25 0 0 0 chrY 16332944 16332969 -8380110 + AT_rich Low_complexity Low_complexity 1 25 0 4239 80 3 20 chrY 16333817 16334406 -8378673 + L1P LINE L1 1 579 -5567 275 108 0 0 chrY 16334406 16334443 -8378636 + MER66B LTR ERV1 171 207 -279 * 497 154 13 0 chrY 16334438 16334516 -8378563 + MER66A LTR ERV1 400 478 0 926 194 0 95 chrY 16334695 16334917 -8378162 + MER66A-int LTR ERV1 201 401 -6275 2743 184 43 32 chrY 16334966 16335603 -8377476 + MER66A-int LTR ERV1 401 1085 -5591 420 246 18 129 chrY 16335709 16335880 -8377199 + MER66-int LTR ERV1 2952 3103 -3573 8182 278 43 36 chrY 16335967 16338203 -8374876 + MER66-int LTR ERV1 1210 3428 -4328 279 0 0 0 chrY 16338203 16338234 -8374845 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 8182 278 43 36 chrY 16338234 16340816 -8372263 + MER66-int LTR ERV1 3428 5805 -1951 2279 184 7 2 chrY 16340823 16341257 -8371822 - L1P LINE L1 -2276 3870 3435 12944 215 83 24 chrY 16341942 16345086 -8367993 + L1M1 LINE L1 11 3339 -4226 45 62 0 0 chrY 16345092 16345172 -8367907 + AT_rich Low_complexity Low_complexity 1 80 0 36821 97 12 9 chrY 16345172 16351107 -8361972 - L1PA5 LINE L1 -3 6151 2 24 77 0 0 chrY 16351118 16351170 -8361909 + AT_rich Low_complexity Low_complexity 1 52 0 2301 226 83 54 chrY 16351170 16352527 -8360552 + L1M1 LINE L1 3292 4687 -2878 * 24062 86 6 5 chrY 16352523 16355837 -8357242 - L1P LINE L1 -2825 3321 4 1698 273 55 24 chrY 16355849 16356700 -8356379 - L1 LINE L1 -2591 3612 2735 367 287 36 12 chrY 16356721 16356888 -8356191 - L1 LINE L1 -2721 3425 3255 * 4695 239 63 12 chrY 16356885 16359423 -8353656 - L1PBb LINE L1 -3478 2725 42 311 98 0 0 chrY 16359424 16359465 -8353614 + Alu SINE Alu 2 42 -259 338 343 27 14 chrY 16359488 16359634 -8353445 - L1PBa LINE L1 -5691 1172 1025 994 333 46 30 chrY 16359716 16360541 -8352538 - L1PBa LINE L1 -6001 862 25 301 224 40 24 chrY 16360687 16360812 -8352267 + LTR23-int LTR ERV1 2596 2722 -2401 1164 252 11 7 chrY 16360833 16361111 -8351968 + AluJo SINE Alu 3 281 -31 2036 189 48 22 chrY 16361132 16361673 -8351406 + LTR23-int LTR ERV1 3904 4458 -1873 10872 94 6 1 chrY 16361675 16363991 -8349088 - L1PA6 LINE L1 -3 7589 5258 8305 89 6 2 chrY 16363992 16365249 -8347830 - L1PA6 LINE L1 -2257 5327 4067 5655 171 28 31 chrY 16365241 16366385 -8346694 - L1PA6 LINE L1 -4684 2900 1760 * 3618 295 66 21 chrY 16366404 16367714 -8345365 - MER52-int LTR ERV1 -826 8093 6725 * 13705 241 33 15 chrY 16367711 16368756 -8344323 - MER52-int LTR ERV1 -576 6515 5490 2192 99 0 0 chrY 16368756 16369077 -8344002 - AluY SINE Alu 0 321 1 13705 241 33 15 chrY 16369077 16371380 -8341699 - MER52-int LTR ERV1 -1601 5490 3166 275 197 15 15 chrY 16371391 16371457 -8341622 + MST-int LTR MaLR 7 72 -1579 * 6021 244 45 17 chrY 16371447 16372927 -8340152 - L1PA6 LINE L1 -5978 1603 82 28 29 0 0 chrY 16372997 16373032 -8340047 + AT_rich Low_complexity Low_complexity 1 35 0 4898 194 38 8 chrY 16373207 16374975 -8338104 - L1MA2 LINE L1 0 6304 4478 4177 242 40 21 chrY 16374969 16377032 -8336047 - L1PA13 LINE L1 -4 6159 4058 * 207 0 0 0 chrY 16377032 16377055 -8336024 + (TTG)n Simple_repeat Simple_repeat 2 24 0 4177 242 40 21 chrY 16377055 16377377 -8335702 - L1PA13 LINE L1 -2105 4058 3744 15715 109 9 5 chrY 16377378 16379735 -8333344 - HERVK9 LTR ERVK -317 5599 3232 1756 114 4 0 chrY 16379738 16380002 -8333077 - HERVK9 LTR ERVK -4027 1889 1625 3919 120 24 18 chrY 16380002 16380660 -8332419 - HERVK9 LTR ERVK -5254 662 1 2854 129 75 8 chrY 16380660 16381139 -8331940 - MER9 LTR ERVK 0 511 1 231 220 0 0 chrY 16381139 16381189 -8331890 - LTR47B LTR ERVL -391 52 3 1749 169 86 21 chrY 16381221 16381559 -8331520 - THE1B LTR MaLR -2 362 3 3739 169 10 26 chrY 16381806 16382603 -8330476 + L1PA7 LINE L1 1118 1901 -4245 5428 125 17 14 chrY 16382603 16384061 -8329018 + L1PA7 LINE L1 4685 6153 -1 1125 244 49 67 chrY 16385078 16385529 -8327550 - LTR47B LTR ERVL 0 443 1 490 294 0 0 chrY 16385529 16385689 -8327390 + MER57A LTR ERV1 244 403 0 * 1792 258 33 46 chrY 16385689 16386223 -8326856 + MER6 DNA MER2_type 94 620 -245 1030 244 30 3 chrY 16386241 16386569 -8326510 + L1PA10 LINE L1 1767 2103 -4684 3571 227 15 8 chrY 16386588 16387506 -8325573 + L1PA10 LINE L1 1992 2916 -3881 * 6572 31 0 1 chrY 16387505 16388382 -8324697 - L1P LINE L1 -726 5429 4553 6344 18 0 0 chrY 16388382 16389102 -8323977 + L1PA3 LINE L1 5430 6154 -1 273 135 0 0 chrY 16389122 16389174 -8323905 + (A)n Simple_repeat Simple_repeat 1 52 0 14969 177 24 5 chrY 16389174 16393033 -8320046 + L1PA10 LINE L1 2905 6814 -5 207 186 0 0 chrY 16393035 16393078 -8320001 + (TATATG)n Simple_repeat Simple_repeat 6 48 0 622 223 26 56 chrY 16393094 16393128 -8319951 + MER6 DNA MER2_type 640 673 -192 1826 148 0 7 chrY 16393128 16393423 -8319656 - AluSc SINE Alu 0 304 12 622 223 26 56 chrY 16393423 16393619 -8319460 + MER6 DNA MER2_type 673 865 0 * 1316 268 86 4 chrY 16393619 16394139 -8318940 + MER67C LTR ERV1 144 706 -4 517 303 70 43 chrY 16394267 16394640 -8318439 + MLT1B LTR MaLR 8 390 0 387 161 0 62 chrY 16395129 16395210 -8317869 - MER1B DNA MER1_type -30 309 234 2650 152 2 15 chrY 16395210 16395691 -8317388 - L1MA9 LINE L1 -324 5988 5514 627 263 137 0 chrY 16395705 16395896 -8317183 - MER1B DNA MER1_type -77 220 1 180 0 0 0 chrY 16397918 16397938 -8315141 + (A)n Simple_repeat Simple_repeat 1 20 0 717 172 83 10 chrY 16398013 16398205 -8314874 - Tigger3b DNA MER2_type -682 549 344 478 311 89 0 chrY 16398205 16398385 -8314694 - Tigger3b DNA MER2_type -1035 196 1 210 91 0 0 chrY 16398879 16398912 -8314167 + (T)n Simple_repeat Simple_repeat 1 33 0 7628 11 0 0 chrY 16398915 16399964 -8313115 - L1HS LINE L1 -1 6154 5106 411 219 31 0 chrY 16403658 16403754 -8309325 - LTR55 LTR ERV -158 390 292 696 288 100 39 chrY 16403906 16404417 -8308662 - LTR55 LTR ERV -6 542 1 196 26 26 53 chrY 16404520 16404558 -8308521 + (CAAAAA)n Simple_repeat Simple_repeat 2 38 0 192 97 0 0 chrY 16405242 16405273 -8307806 + (CA)n Simple_repeat Simple_repeat 1 31 0 21 36 0 0 chrY 16405366 16405394 -8307685 + AT_rich Low_complexity Low_complexity 1 28 0 590 144 0 10 chrY 16405395 16405499 -8307580 - AluSc SINE Alu -1 308 206 1315 85 30 0 chrY 16405499 16405699 -8307380 - L1P LINE L1 -1800 4346 4141 339 169 0 0 chrY 16405699 16405758 -8307321 - AluSq SINE Alu -93 210 152 13305 117 27 2 chrY 16405770 16408655 -8304424 - L1PA7 LINE L1 0 6469 3505 9609 146 68 38 chrY 16408655 16411688 -8301391 - L1PA7 LINE L1 -3173 3288 4 867 123 8 0 chrY 16411693 16411815 -8301264 - AluSg SINE Alu -175 135 13 350 307 8 8 chrY 16411841 16411968 -8301111 + L1MA7 LINE L1 374 500 -5803 * 543 274 93 25 chrY 16411965 16412322 -8300757 + L1MA7 LINE L1 1008 1392 -4911 1819 129 15 75 chrY 16412322 16412654 -8300425 + AluSx SINE Alu 1 312 0 30 45 0 0 chrY 16412767 16412811 -8300268 + AT_rich Low_complexity Low_complexity 1 44 0 778 309 61 29 chrY 16412820 16413522 -8299557 + L1M4c LINE L1 1102 1826 -4558 253 240 0 91 chrY 16413935 16414089 -8298990 + L1M4c LINE L1 2405 2544 -3838 361 348 97 4 chrY 16414151 16414398 -8298681 + L1M4c LINE L1 2518 2787 -3595 5962 219 60 54 chrY 16414590 16415200 -8297879 + L1MA7 LINE L1 3167 3772 -2755 4456 124 63 23 chrY 16415200 16415949 -8297130 - LTR17 LTR ERV1 -1 779 1 5962 219 60 54 chrY 16415949 16416942 -8296137 + L1MA7 LINE L1 3772 4758 -1769 1792 141 65 0 chrY 16416942 16417233 -8295846 + AluSq SINE Alu 1 310 -3 5962 219 60 54 chrY 16417233 16418779 -8294300 + L1MA7 LINE L1 4758 6333 -194 1204 276 92 0 chrY 16418877 16419334 -8293745 + Cheshire DNA MER1_type 580 1078 -1342 1233 208 23 66 chrY 16419346 16419711 -8293368 - MLT1A1 LTR MaLR -12 353 1 233 128 0 0 chrY 16419717 16419756 -8293323 + Cheshire DNA MER1_type 1080 1118 -1302 229 167 0 21 chrY 16419757 16419805 -8293274 + L1M2 LINE L1 5707 5753 -547 275 0 0 28 chrY 16419853 16419889 -8293190 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 539 281 37 14 chrY 16419907 16420124 -8292955 + Cheshire DNA MER1_type 1204 1425 -995 529 220 83 116 chrY 16420136 16420313 -8292766 + MLT1A1 LTR MaLR 6 166 -199 8009 66 4 2 chrY 16420313 16421280 -8291799 - LTR5 LTR ERVK 0 969 1 529 220 83 116 chrY 16421280 16421474 -8291605 + MLT1A1 LTR MaLR 166 365 0 719 271 49 8 chrY 16421474 16421721 -8291358 + MLT1A1-int LTR MaLR 1 257 -1478 3967 166 97 0 chrY 16421721 16422548 -8290531 + L1PA11 LINE L1 3643 4549 -1597 2983 127 44 21 chrY 16422551 16423077 -8290002 + L1PA11 LINE L1 5635 6172 -2 247 264 47 0 chrY 16423657 16423763 -8289316 + L1MC4 LINE L1 7802 7912 -130 240 86 0 0 chrY 16423788 16423823 -8289256 + (GA)n Simple_repeat Simple_repeat 2 36 0 1792 217 59 63 chrY 16423947 16424570 -8288509 + MLT1A1-int LTR MaLR 267 887 -848 252 203 89 0 chrY 16424612 16424691 -8288388 + MSTD LTR MaLR 311 396 0 524 203 94 45 chrY 16424693 16424895 -8288184 + Cheshire DNA MER1_type 1434 1645 -775 375 273 46 43 chrY 16425823 16426105 -8286974 + L1MB5 LINE L1 4678 4960 -1186 2249 107 0 3 chrY 16432231 16432530 -8280549 + AluY SINE Alu 1 298 -13 2266 216 79 26 chrY 16433103 16433784 -8279295 + Tigger3b DNA MER2_type 3 719 -512 5015 139 27 21 chrY 16433791 16435138 -8277941 + L1PA13 LINE L1 4780 6137 -26 1896 190 74 23 chrY 16435148 16435632 -8277447 + Tigger3b DNA MER2_type 724 1232 0 878 132 0 0 chrY 16435968 16436097 -8276982 - AluSp/q SINE Alu -7 306 178 198 0 0 0 chrY 16437926 16437948 -8275131 + (TAAAA)n Simple_repeat Simple_repeat 4 25 0 279 221 26 0 chrY 16438161 16438238 -8274841 + L1M4 LINE L1 350 428 -6114 213 39 0 0 chrY 16438341 16438367 -8274712 + (GA)n Simple_repeat Simple_repeat 1 26 0 429 268 38 60 chrY 16438410 16438593 -8274486 + L1M4 LINE L1 561 739 -5803 2614 221 64 25 chrY 16438774 16439528 -8273551 + L1MB5 LINE L1 5380 6162 -12 1459 261 62 20 chrY 16439547 16439721 -8273358 + L1M4 LINE L1 926 1091 -5555 2739 13 0 0 chrY 16439721 16440022 -8273057 + AluYa5 SINE Alu 1 301 -10 1459 261 62 20 chrY 16440022 16440930 -8272149 + L1M4 LINE L1 1091 2105 -4541 192 207 122 61 chrY 16441091 16441173 -8271906 - MIR3 SINE MIR -3 205 119 3909 207 38 45 chrY 16442300 16443554 -8269525 + L1 LINE L1 4089 5333 -813 2050 234 8 8 chrY 16443553 16444151 -8268928 + L1 LINE L1 4396 4993 -1153 * 844 181 0 0 chrY 16444151 16444278 -8268801 + FLAM_C SINE Alu 1 127 -6 578 208 15 39 chrY 16444371 16444501 -8268578 + FRAM SINE Alu 28 154 -22 1011 240 79 13 chrY 16444501 16444880 -8268199 + L1 LINE L1 4985 5388 -758 2053 104 55 0 chrY 16444880 16445189 -8267890 + L1PA13 LINE L1 5825 6150 -13 * 10532 100 12 16 chrY 16445184 16447550 -8265529 + L1PA7 LINE L1 3776 6154 0 307 327 100 13 chrY 16447799 16447949 -8265130 + L1MEd LINE L1 90 252 -5953 320 288 160 33 chrY 16448852 16449158 -8263921 + L1MEd LINE L1 1291 1635 -4761 2141 127 3 0 chrY 16449189 16449488 -8263591 - AluY SINE Alu -9 302 3 2091 95 0 11 chrY 16449762 16450086 -8262993 + AluSx SINE Alu 1 321 0 21 57 0 0 chrY 16450400 16450435 -8262644 + AT_rich Low_complexity Low_complexity 1 35 0 308 272 136 0 chrY 16450771 16450874 -8262205 + L1ME LINE L1 5627 5743 -427 918 185 62 14 chrY 16451500 16451711 -8261368 - Tigger3(Golem) DNA MER2_type -46 2983 2763 23 0 0 0 chrY 16454269 16454292 -8258787 + AT_rich Low_complexity Low_complexity 1 23 0 298 230 30 0 chrY 16454292 16454392 -8258687 + (CATA)n Simple_repeat Simple_repeat 2 104 0 1851 149 7 13 chrY 16454422 16454723 -8258356 + AluSx SINE Alu 1 299 -13 727 258 49 24 chrY 16454754 16455128 -8257951 + L1ME LINE L1 5357 5745 -417 23 78 0 0 chrY 16457120 16457171 -8255908 + AT_rich Low_complexity Low_complexity 1 51 0 769 283 108 35 chrY 16457477 16457877 -8255202 + MER74B LTR ERVL 58 486 -136 1810 183 7 0 chrY 16458661 16458956 -8254123 - AluSx SINE Alu -15 297 1 929 293 67 37 chrY 16459418 16459883 -8253196 + MER74B LTR ERVL 70 548 -74 256 246 29 0 chrY 16459824 16459893 -8253186 - MER88 LTR ERVL -313 151 81 * 571 235 8 0 chrY 16460021 16460140 -8252939 + FLAM_A SINE Alu 2 121 -12 297 291 75 37 chrY 16460689 16460823 -8252256 + MIR SINE MIR 20 158 -104 840 171 21 0 chrY 16460828 16460968 -8252111 + AluSc SINE Alu 3 145 -164 1472 138 14 0 chrY 16461119 16461337 -8251742 + AluSc SINE Alu 1 221 -88 207 0 0 0 chrY 16461368 16461391 -8251688 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2116 108 10 3 chrY 16461534 16461822 -8251257 + AluY SINE Alu 1 290 -21 1914 155 0 0 chrY 16463377 16463668 -8249411 + AluSx SINE Alu 3 293 -19 2265 240 76 55 chrY 16466925 16468389 -8244690 - L1M4 LINE L1 -407 7190 5691 8245 201 24 13 chrY 16468401 16470540 -8242539 - L1PA12 LINE L1 -1 7605 5490 3212 176 40 11 chrY 16470540 16471165 -8241914 - LTR9B LTR ERV1 -1 643 1 8245 201 24 13 chrY 16471165 16471450 -8241629 - L1PA12 LINE L1 -2116 5490 5114 192 40 0 0 chrY 16471450 16471475 -8241604 + (TGG)n Simple_repeat Simple_repeat 2 26 0 8245 201 24 13 chrY 16471475 16471642 -8241437 - L1PA12 LINE L1 -2492 5114 4950 25828 51 11 2 chrY 16471697 16474943 -8238136 - L1P LINE L1 -2865 3281 9 1816 252 14 12 chrY 16474980 16475480 -8237599 - L1PA12 LINE L1 -3010 4574 4074 * 4501 253 17 24 chrY 16475479 16476545 -8236534 - L1PA12 LINE L1 -6336 1245 187 1337 231 120 19 chrY 16476555 16477478 -8235601 - L1M4 LINE L1 -3526 4039 3001 4043 215 20 18 chrY 16477485 16478342 -8234737 - L1PA15 LINE L1 -22 6794 5934 2087 120 26 13 chrY 16478342 16478650 -8234429 - AluSp SINE Alu 0 313 2 4043 215 20 18 chrY 16478650 16479081 -8233998 - L1PA15 LINE L1 -882 5934 5505 3337 83 40 6 chrY 16479089 16479923 -8233156 + MER11A LTR ERVK 38 1126 -140 5933 251 56 32 chrY 16479929 16480758 -8232321 - L1PA15 LINE L1 -2777 4020 3212 2205 102 17 0 chrY 16480758 16481053 -8232026 + AluSx SINE Alu 9 308 -4 5933 251 56 32 chrY 16481053 16481465 -8231614 - L1PA15 LINE L1 -3585 3212 2811 243 61 0 0 chrY 16481465 16481498 -8231581 + (TTG)n Simple_repeat Simple_repeat 2 34 0 5933 251 56 32 chrY 16481498 16482242 -8230837 - L1PA15 LINE L1 -3986 2811 2086 1594 147 28 0 chrY 16482242 16482493 -8230586 - AluSg1 SINE Alu -15 294 37 5933 251 56 32 chrY 16482493 16482769 -8230310 - L1PA15 LINE L1 -4711 2086 1818 2160 105 0 3 chrY 16482769 16483077 -8230002 - AluSq SINE Alu 0 307 1 5933 251 56 32 chrY 16483077 16483975 -8229104 - L1PA15 LINE L1 -4979 1818 762 30 83 0 0 chrY 16484968 16485040 -8228039 + AT_rich Low_complexity Low_complexity 1 72 0 2821 238 39 6 chrY 16485691 16486484 -8226595 + L1MB7 LINE L1 5366 6184 0 23 0 0 0 chrY 16486771 16486794 -8226285 + AT_rich Low_complexity Low_complexity 1 23 0 327 200 25 42 chrY 16486999 16487119 -8225960 - LTR37A LTR ERV1 -299 127 10 998 220 45 128 chrY 16487396 16487500 -8225579 - MSTB1 LTR MaLR -3 429 318 1830 152 25 0 chrY 16487500 16487783 -8225296 + AluSp SINE Alu 1 290 -23 998 220 45 128 chrY 16487783 16488146 -8224933 - MSTB1 LTR MaLR -114 318 1 314 187 54 6 chrY 16488406 16488572 -8224507 + (TA)n Simple_repeat Simple_repeat 2 175 0 332 343 49 25 chrY 16489008 16489212 -8223867 + MIR SINE MIR 41 249 -13 491 321 44 29 chrY 16490516 16490790 -8222289 - LTR40a LTR ERVL 0 519 242 1231 260 73 29 chrY 16490842 16491403 -8221676 + L1PA15-16 LINE L1 2029 2614 -4235 2243 111 10 0 chrY 16491468 16491775 -8221304 - AluY SINE Alu -1 310 1 271 157 59 0 chrY 16491964 16492015 -8221064 + Tigger1 DNA MER2_type 669 722 -1696 1009 188 64 142 chrY 16492048 16492484 -8220595 + LTR1B LTR ERV1 335 736 -90 229 312 13 26 chrY 16492537 16492614 -8220465 + L1M3e LINE L1 635 710 -6320 429 282 150 32 chrY 16492767 16493114 -8219965 + L1M3e LINE L1 2315 2702 -4405 2308 203 38 115 chrY 16493114 16493515 -8219564 + Tigger1 DNA MER2_type 1 431 -1987 1592 47 0 0 chrY 16493515 16493708 -8219371 + L1PA5 LINE L1 5955 6147 -7 2308 203 38 115 chrY 16493708 16493927 -8219152 + Tigger1 DNA MER2_type 431 537 -1881 1537 124 46 118 chrY 16493927 16494250 -8218829 - AluSq SINE Alu -13 300 1 2308 203 38 115 chrY 16494250 16494500 -8218579 + Tigger1 DNA MER2_type 537 805 -1613 455 334 106 25 chrY 16494573 16494893 -8218186 + L1M2 LINE L1 97 442 -6407 1054 242 27 50 chrY 16495388 16495685 -8217394 + L1PA15-16 LINE L1 444 733 -6116 346 201 53 118 chrY 16496162 16496331 -8216748 + L1PA15-16 LINE L1 1436 1593 -5257 723 270 42 28 chrY 16496380 16496736 -8216343 + L1PA15-16 LINE L1 1731 2091 -4758 3808 299 20 8 chrY 16496742 16497730 -8215349 + L1PA12 LINE L1 5 1004 -6577 8258 223 18 47 chrY 16497730 16498555 -8214524 + L1PA12 LINE L1 2724 3571 -4013 1790 182 0 10 chrY 16498555 16498862 -8214217 + AluSg SINE Alu 5 308 -2 8258 223 18 47 chrY 16498862 16498976 -8214103 + L1PA12 LINE L1 3571 3687 -3897 229 104 0 0 chrY 16498976 16499024 -8214055 + LTR66 LTR ERVL 392 439 -171 8258 223 18 47 chrY 16499024 16500389 -8212690 + L1PA12 LINE L1 3687 5072 -2512 4649 147 22 3 chrY 16500509 16501242 -8211837 + L1PA5 LINE L1 2 748 -5398 * 21151 64 7 1 chrY 16501240 16504525 -8208554 + L1PA5 LINE L1 2589 5894 -260 228 200 0 0 chrY 16504523 16504563 -8208516 + L1PA15-16 LINE L1 2919 2958 -3891 * 5311 289 51 27 chrY 16504531 16505892 -8207187 + L1 LINE L1 2927 4254 -2595 1657 134 3 92 chrY 16505892 16506198 -8206881 - AluSg SINE Alu -15 295 17 5311 289 51 27 chrY 16506198 16506932 -8206147 + L1 LINE L1 4254 5099 -1750 1048 223 88 18 chrY 16506932 16507205 -8205874 + AluSg SINE Alu 1 292 -8 5311 289 51 27 chrY 16507205 16507712 -8205367 + L1 LINE L1 5099 5592 -1257 3735 107 20 3 chrY 16507710 16508360 -8204719 - L1PA7 LINE L1 -721 5433 4773 * 4931 95 15 1 chrY 16508360 16509046 -8204033 + L1PA7 LINE L1 5451 6146 -8 22 0 0 0 chrY 16509046 16509068 -8204011 + AT_rich Low_complexity Low_complexity 1 22 0 783 291 71 10 chrY 16509108 16509727 -8203352 + L1 LINE L1 2869 3525 -2621 3674 269 109 22 chrY 16509755 16510789 -8202290 + MSTB-int LTR MaLR 191 1370 -281 1586 201 7 0 chrY 16510789 16511088 -8201991 - AluSx SINE Alu -11 301 1 3674 269 109 22 chrY 16511088 16511397 -8201682 + MSTB-int LTR MaLR 1370 1651 0 1600 250 29 10 chrY 16511399 16511815 -8201264 + MSTB LTR MaLR 3 426 0 807 261 74 7 chrY 16511818 16512117 -8200962 + L1MA8 LINE L1 2143 2461 -3685 333 313 0 0 chrY 16512156 16512255 -8200824 + L1MC4 LINE L1 6595 6693 -1349 502 292 31 9 chrY 16512255 16512481 -8200598 + L1MA8 LINE L1 2432 2662 -3484 1287 164 107 46 chrY 16512482 16512762 -8200317 - AluSq SINE Alu -16 297 1 1552 225 20 35 chrY 16512791 16513195 -8199884 + L1PA16 LINE L1 5465 5862 -304 28404 121 9 5 chrY 16513229 16518471 -8194608 - L1PA6 LINE L1 -1 6468 1211 656 305 3 49 chrY 16518472 16518780 -8194299 + L1PA16 LINE L1 5859 6152 -14 5758 266 61 21 chrY 16518812 16522281 -8190798 + L1MA8 LINE L1 2676 6286 -5 272 264 44 0 chrY 16522313 16522404 -8190675 + L1 LINE L1 3525 3619 -2527 19088 101 10 4 chrY 16522453 16528430 -8184649 + L1PA6 LINE L1 1 6154 0 410 269 19 0 chrY 16528505 16528609 -8184470 - HERVI LTR ERV1 -332 7453 7348 47 33 0 0 chrY 16528675 16528736 -8184343 + AT_rich Low_complexity Low_complexity 1 61 0 1347 278 72 34 chrY 16528774 16529429 -8183650 + L1 LINE L1 3641 4320 -1826 925 191 41 14 chrY 16529458 16529678 -8183401 - L1MA1 LINE L1 0 6302 6077 1295 275 24 2 chrY 16529688 16530032 -8183047 + L1PA14 LINE L1 23 468 -7113 1198 140 0 0 chrY 16530034 16530198 -8182881 + AluSc SINE Alu 3 166 -143 3515 86 16 14 chrY 16530198 16530707 -8182372 - LTR10D LTR ERV1 -1 512 3 13265 238 36 43 chrY 16530716 16534213 -8178866 - LTR10D-int LTR ERV1 -1 7758 3310 1807 145 0 4 chrY 16534213 16534482 -8178597 + AluY SINE Alu 13 280 -31 13265 238 36 43 chrY 16534482 16536917 -8176162 - LTR10D-int LTR ERV1 -4449 3310 857 1212 282 35 46 chrY 16537308 16537851 -8175228 - HERVI LTR ERV1 -6653 1132 596 774 283 16 41 chrY 16537966 16538280 -8174799 - HERVI LTR ERV1 -7456 329 24 3736 74 0 25 chrY 16538306 16538832 -8174247 - LTR10D LTR ERV1 0 513 1 894 133 0 0 chrY 16538832 16538975 -8174104 + AluSc SINE Alu 164 306 -3 796 196 0 0 chrY 16538975 16539113 -8173966 + L1PA14 LINE L1 457 594 -6987 1395 251 32 111 chrY 16539113 16539778 -8173301 - LTR9 LTR ERV1 0 612 1 3993 240 22 28 chrY 16539778 16542982 -8170097 + L1PA14 LINE L1 591 3813 -3786 1815 167 3 3 chrY 16542982 16543287 -8169792 + AluSc SINE Alu 1 305 -4 3993 240 22 28 chrY 16543287 16547064 -8166015 + L1PA14 LINE L1 3813 7596 -3 1444 286 52 12 chrY 16547077 16547807 -8165272 + L1MA8 LINE L1 4498 5256 -890 42 0 0 0 chrY 16547900 16547942 -8165137 + AT_rich Low_complexity Low_complexity 1 42 0 2110 249 39 36 chrY 16547942 16548616 -8164463 + L1MA8 LINE L1 5263 5938 -353 21 36 0 0 chrY 16548627 16548655 -8164424 + AT_rich Low_complexity Low_complexity 1 28 0 636 288 104 0 chrY 16548738 16548960 -8164119 + L1PBa LINE L1 1 245 -6618 2640 152 10 112 chrY 16548960 16549289 -8163790 + MER41A LTR ERV1 2 363 -191 547 28 0 0 chrY 16549289 16549360 -8163719 + L1PA3 LINE L1 6080 6150 -5 2640 152 10 112 chrY 16549360 16549601 -8163478 + MER41A LTR ERV1 363 509 -45 7007 114 8 19 chrY 16549601 16550684 -8162395 - MER11C LTR ERVK 0 1071 1 2640 152 10 112 chrY 16550684 16550719 -8162360 + MER41A LTR ERV1 509 546 -8 1042 258 55 18 chrY 16550729 16551058 -8162021 + L1PBa LINE L1 243 583 -6280 804 237 11 11 chrY 16551086 16551272 -8161807 - MER61E LTR ERV1 -43 526 341 435 263 15 30 chrY 16551454 16551587 -8161492 - LTR25 LTR ERV1 -432 362 232 7979 193 47 21 chrY 16551704 16552657 -8160422 - LTR9-int LTR ERV1 -3 6993 6066 7725 74 19 0 chrY 16552657 16553645 -8159434 - LTR13 LTR ERVK 0 1007 1 7979 193 47 21 chrY 16553645 16554886 -8158193 - LTR9-int LTR ERV1 -930 6066 2216 39694 76 5 3 chrY 16554931 16561070 -8152009 - L1PA4 LINE L1 0 6155 7 7944 213 56 41 chrY 16561076 16563551 -8149528 - LTR9-int LTR ERV1 -2063 4933 1408 904 253 0 0 chrY 16563552 16563742 -8149337 - MER61E-int LTR ERV1 -6718 2201 2012 1028 263 68 11 chrY 16563758 16564244 -8148835 - MER61E-int LTR ERV1 -5323 1673 986 1981 147 7 0 chrY 16564247 16564539 -8148540 - AluSq SINE Alu -17 296 3 2719 243 51 33 chrY 16564543 16565383 -8147696 - MER61E-int LTR ERV1 -5910 1086 232 506 213 41 16 chrY 16565384 16565506 -8147573 - MER61E LTR ERV1 -102 467 343 303 262 58 10 chrY 16565689 16565792 -8147287 - LTR25 LTR ERV1 -438 356 249 9435 190 53 71 chrY 16565881 16566178 -8146901 + L1PBa LINE L1 586 887 -5976 354 177 16 0 chrY 16566178 16566240 -8146839 - AluSq/x SINE Alu -161 141 79 9435 190 53 71 chrY 16566240 16567676 -8145403 + L1PBa LINE L1 887 2330 -4533 3965 186 8 50 chrY 16567676 16568504 -8144575 + LTR25 LTR ERV1 1 794 0 9435 190 53 71 chrY 16568504 16569127 -8143952 + L1PBa LINE L1 2330 2962 -3901 1870 167 3 10 chrY 16569129 16569434 -8143645 + AluSg SINE Alu 3 305 -5 1652 271 26 8 chrY 16569440 16569975 -8143104 + L1 LINE L1 3041 3585 -3277 1417 185 36 125 chrY 16569979 16570224 -8142855 + MLT2A2 LTR ERVL 1 266 -288 2153 132 0 0 chrY 16570224 16570528 -8142551 + AluY SINE Alu 2 305 -6 1417 185 36 125 chrY 16570528 16570868 -8142211 + MLT2A2 LTR ERVL 266 554 0 40464 56 24 2 chrY 16570932 16576954 -8136125 + L1PA3 LINE L1 2 6152 -3 1171 261 32 2 chrY 16576948 16577351 -8135728 + L1 LINE L1 2920 3334 -2812 * 955 174 6 0 chrY 16577354 16577521 -8135558 - AluY SINE Alu -143 168 1 2108 257 60 22 chrY 16577528 16578490 -8134589 - L1PA13 LINE L1 -4113 2684 1677 23 78 0 0 chrY 16578504 16578555 -8134524 + AT_rich Low_complexity Low_complexity 1 51 0 196 310 270 26 chrY 16578993 16579219 -8133860 - L3 LINE CR1 -26 1551 1271 336 260 65 91 chrY 16579222 16579453 -8133626 - L1MC4 LINE L1 -110 7932 7708 1069 165 0 21 chrY 16579468 16579656 -8133423 - AluY SINE Alu -10 301 118 725 135 0 0 chrY 16579762 16579873 -8133206 - AluY SINE Alu -200 111 1 631 151 0 25 chrY 16579876 16579995 -8133084 - L1PB3 LINE L1 -1 6153 6038 22 0 0 0 chrY 16580002 16580024 -8133055 + AT_rich Low_complexity Low_complexity 1 22 0 640 249 35 6 chrY 16580037 16580206 -8132873 - L1PB4 LINE L1 -104 6052 5879 * 1119 289 47 25 chrY 16580203 16580836 -8132243 - L1 LINE L1 -2647 4918 4272 2807 202 78 6 chrY 16580932 16581586 -8131493 - L1MA2 LINE L1 0 6304 5604 4776 150 56 68 chrY 16581603 16581880 -8131199 - L1 LINE L1 -4282 3283 3004 194 0 39 0 chrY 16581880 16581906 -8131173 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 4776 150 56 68 chrY 16581906 16582148 -8130931 - L1 LINE L1 -4561 3004 2761 2626 30 0 3 chrY 16582148 16582450 -8130629 - AluY SINE Alu -10 301 1 4776 150 56 68 chrY 16582450 16582631 -8130448 - L1 LINE L1 -4804 2761 2579 2045 120 0 29 chrY 16582631 16582939 -8130140 - AluY SINE Alu -12 299 1 4776 150 56 68 chrY 16582939 16583489 -8129590 - L1 LINE L1 -4986 2579 2046 810 229 37 18 chrY 16583583 16583801 -8129278 + L1M1 LINE L1 9 230 -7335 445 186 20 39 chrY 16583805 16583907 -8129172 + L1M1 LINE L1 1961 2060 -5505 240 360 69 0 chrY 16583911 16584100 -8128979 - L1 LINE L1 -3381 2765 2564 1648 306 48 25 chrY 16584131 16585022 -8128057 - L1PA15-16 LINE L1 -3717 3132 2216 844 241 48 52 chrY 16585064 16585484 -8127595 - L1PA15-16 LINE L1 -4626 2223 1806 3150 227 61 21 chrY 16585485 16586390 -8126689 + L1PB3 LINE L1 824 1776 -5087 4630 113 20 25 chrY 16586394 16587085 -8125994 - LTR12 LTR ERV1 0 688 1 3037 262 73 16 chrY 16587096 16587518 -8125561 + L1PB3 LINE L1 2112 2509 -4353 2088 132 0 25 chrY 16587518 16587836 -8125243 + AluSp SINE Alu 1 310 -3 3037 262 73 16 chrY 16587836 16589353 -8123726 + L1PB3 LINE L1 2509 4270 -2592 2591 131 49 39 chrY 16589354 16589841 -8123238 + LTR22B LTR ERVK 1 492 0 4013 173 42 4 chrY 16589843 16590566 -8122513 + HERVK22 LTR ERVK 3 752 -6085 26 0 0 0 chrY 16590977 16591003 -8122076 + AT_rich Low_complexity Low_complexity 1 26 0 706 218 35 7 chrY 16591003 16591145 -8121934 + HERVK22 LTR ERVK 2327 2472 -4365 525 202 0 0 chrY 16591153 16591252 -8121827 + HERVK22 LTR ERVK 3723 3821 -3016 18235 129 34 0 chrY 16591253 16593991 -8119088 + HERVK22 LTR ERVK 4008 6836 -1 2681 124 45 31 chrY 16593991 16594475 -8118604 + LTR22B LTR ERVK 2 492 0 2749 233 36 18 chrY 16594475 16595244 -8117835 + L1PB3 LINE L1 4266 5048 -1814 2644 190 42 28 chrY 16595246 16595820 -8117259 + L1PB3 LINE L1 6288 6869 -1 1181 255 67 2 chrY 16595844 16596310 -8116769 + L1MA5 LINE L1 4739 5234 -912 1639 186 60 26 chrY 16596404 16596754 -8116325 + THE1C LTR MaLR 14 375 0 2371 226 81 34 chrY 16596766 16597639 -8115440 + L1MA5 LINE L1 5387 6300 0 1101 269 54 16 chrY 16597647 16598070 -8115009 + L1 LINE L1 2630 3068 -3078 1334 256 10 3 chrY 16598070 16598375 -8114704 - L1PA16 LINE L1 -6 6160 5854 4233 241 67 56 chrY 16598387 16599588 -8113491 + L1 LINE L1 3160 4346 -1800 1626 108 13 17 chrY 16599588 16599819 -8113260 + AluY SINE Alu 5 234 -77 4233 241 67 56 chrY 16599819 16599970 -8113109 + L1 LINE L1 4346 4494 -1652 281 26 26 0 chrY 16599970 16600008 -8113071 + (CA)n Simple_repeat Simple_repeat 2 40 0 4233 241 67 56 chrY 16600008 16600642 -8112437 + L1 LINE L1 4494 5169 -977 25 75 0 0 chrY 16600642 16600695 -8112384 + AT_rich Low_complexity Low_complexity 1 53 0 4449 306 84 29 chrY 16600757 16602357 -8110722 + L1PA13 LINE L1 148 1836 -4951 5077 209 26 16 chrY 16602362 16603378 -8109701 - THE1-int LTR MaLR -6 1574 549 1013 231 60 32 chrY 16603378 16603660 -8109419 - THE1C LTR MaLR -85 290 1 5823 279 89 32 chrY 16603660 16604264 -8108815 + L1PA13 LINE L1 2161 2729 -4068 4766 123 17 4 chrY 16604264 16605020 -8108059 + MER4E LTR ERV1 1 766 0 5823 279 89 32 chrY 16605020 16605212 -8107867 + L1PA13 LINE L1 2729 2909 -3888 315 0 0 0 chrY 16605212 16605247 -8107832 + (CAA)n Simple_repeat Simple_repeat 2 36 0 5823 279 89 32 chrY 16605247 16607322 -8105757 + L1PA13 LINE L1 2909 5195 -1602 1834 131 0 50 chrY 16607344 16607699 -8105380 + AluY SINE Alu 1 340 0 20834 145 15 35 chrY 16607707 16611907 -8101172 - L1P3 LINE L1 -1884 4577 367 411 377 60 16 chrY 16611903 16612219 -8100860 - L1PA12 LINE L1 -5021 1977 1648 * 651 214 34 43 chrY 16612251 16612461 -8100618 - L1PA12 LINE L1 -5492 1506 167 1522 261 30 100 chrY 16612523 16613164 -8099915 + L1M1 LINE L1 139 734 -6831 5762 193 34 8 chrY 16613164 16614228 -8098851 + L1PA8A LINE L1 1 1097 -4778 2035 138 3 0 chrY 16614228 16614517 -8098562 - AluSc SINE Alu -19 290 1 5762 193 34 8 chrY 16614517 16614564 -8098515 + L1PA8A LINE L1 1097 1141 -4734 9739 187 49 7 chrY 16614566 16619581 -8093498 + L1PA8A LINE L1 1187 6437 -9 9483 226 96 13 chrY 16619606 16622323 -8090756 + L1M1 LINE L1 721 3663 -3902 5374 145 2 6 chrY 16622323 16624351 -8088728 + L1PA7 LINE L1 4115 6153 -1 2441 193 40 22 chrY 16624352 16624984 -8088095 + L1MA2 LINE L1 5653 6295 -9 27 0 0 0 chrY 16624984 16625011 -8088068 + AT_rich Low_complexity Low_complexity 1 27 0 1850 277 24 39 chrY 16625012 16625900 -8087179 - L1 LINE L1 -1820 5745 4858 3516 200 30 34 chrY 16625900 16626763 -8086316 - L1PA14 LINE L1 0 6172 5307 945 300 21 7 chrY 16626763 16627050 -8086029 - AluJb SINE Alu -11 291 1 3516 200 30 34 chrY 16627050 16627308 -8085771 - L1PA14 LINE L1 -865 5307 3406 2529 257 38 11 chrY 16627307 16628156 -8084923 + L1P LINE L1 4213 5084 -1062 * 1061 282 86 3 chrY 16628167 16628831 -8084248 - L1 LINE L1 -2691 4874 4156 773 216 89 76 chrY 16628872 16629242 -8083837 - THE1C LTR MaLR 0 375 1 3170 225 68 20 chrY 16629248 16630089 -8082990 - THE1C-int LTR MaLR -7 1573 693 1566 237 65 25 chrY 16630109 16630678 -8082401 - L1 LINE L1 -4968 2597 2006 455 337 88 15 chrY 16630723 16630996 -8082083 + L1PA12 LINE L1 8 300 -7281 908 357 39 39 chrY 16631268 16632425 -8080654 + L1PA12 LINE L1 1151 2080 -5501 * 2373 293 33 22 chrY 16632402 16632821 -8080258 + L1PA12 LINE L1 1710 2123 -5458 1669 166 35 44 chrY 16632821 16633188 -8079891 + THE1B LTR MaLR 1 364 0 2373 293 33 22 chrY 16633188 16633708 -8079371 + L1PA12 LINE L1 2123 2659 -4922 1338 202 47 18 chrY 16633715 16634056 -8079023 + L1MA2 LINE L1 5952 6302 -2 1436 239 30 22 chrY 16634130 16634498 -8078581 + MSTA-int LTR MaLR 869 1239 -412 4294 119 13 15 chrY 16634508 16635222 -8077857 - LTR30 LTR ERV1 -10 712 1 3193 77 22 4 chrY 16635222 16635676 -8077403 - HERV30 LTR ERV1 0 8257 7796 2631 68 3 0 chrY 16635678 16636033 -8077046 - HERV30 LTR ERV1 -4644 3613 3258 1921 123 46 7 chrY 16636034 16636318 -8076761 + AluY SINE Alu 1 295 -16 24483 77 11 6 chrY 16636318 16639638 -8073441 - HERV30 LTR ERV1 -4905 3352 17 1724 237 19 0 chrY 16639638 16639654 -8073425 + MSTA-int LTR MaLR 1217 1231 -420 4583 119 23 3 chrY 16639654 16640362 -8072717 - LTR30 LTR ERV1 0 722 1 1724 237 19 0 chrY 16640362 16640758 -8072321 + MSTA-int LTR MaLR 1231 1637 -14 1421 262 81 2 chrY 16640771 16641168 -8071911 + MSTA LTR MaLR 1 428 0 1622 205 134 11 chrY 16641833 16642214 -8070865 + MSTA LTR MaLR 1 428 0 308 303 80 16 chrY 16642250 16642631 -8070448 + LTR40c LTR ERVL 60 462 0 463 331 27 5 chrY 16643049 16643233 -8069846 + HERVL40 LTR ERVL 2867 3054 -2476 1059 142 79 0 chrY 16643463 16643653 -8069426 - LTR12 LTR ERV1 -133 581 377 270 243 29 19 chrY 16643654 16643757 -8069322 - LTR30 LTR ERV1 -80 642 539 5431 137 40 98 chrY 16643757 16645113 -8067966 - pTR5 LTR ERV1 -419 2019 743 464 358 73 42 chrY 16645116 16645812 -8067267 + HERVL40 LTR ERVL 3233 3950 -1580 1357 192 4 0 chrY 16646974 16647229 -8065850 + L1PA13 LINE L1 5680 5935 -228 886 218 38 9 chrY 16647241 16647509 -8065570 + MER52C-int LTR ERV1 1212 2379 -3884 1968 149 0 0 chrY 16647509 16647791 -8065288 + AluSx SINE Alu 1 282 -30 1740 174 31 0 chrY 16647808 16648096 -8064983 + AluSq SINE Alu 1 297 -16 2607 196 73 80 chrY 16648097 16649058 -8064021 + MER52C-int LTR ERV1 1277 2230 -2987 1581 38 1 0 chrY 16649062 16649282 -8063797 - L1P LINE L1 -799 5352 5132 6816 32 0 4 chrY 16649282 16650087 -8062992 + L1PA4 LINE L1 5344 6155 0 1504 159 81 26 chrY 16650087 16650471 -8062608 + MER52C-int LTR ERV1 4314 4718 -2819 1048 222 38 20 chrY 16650474 16650947 -8062132 + MER52C-int LTR ERV1 2443 4689 -1257 345 148 16 0 chrY 16650953 16651014 -8062065 + MER52C-int LTR ERV1 5976 6037 -1168 * 921 203 25 15 chrY 16651004 16651201 -8061878 + MER52C-int LTR ERV1 6892 7090 -1 1178 260 7 16 chrY 16651228 16651536 -8061543 + MER52C LTR ERV1 12 316 -962 1663 204 0 0 chrY 16651548 16651878 -8061201 - AluSx SINE Alu 0 335 6 310 173 27 13 chrY 16651886 16651961 -8061118 + L1PA13 LINE L1 6082 6157 -6 399 21 0 0 chrY 16652109 16652157 -8060922 + (TG)n Simple_repeat Simple_repeat 1 48 0 913 264 76 22 chrY 16652292 16652660 -8060419 + MSTD LTR MaLR 9 396 0 764 242 33 14 chrY 16653327 16653538 -8059541 + L1PA15 LINE L1 1640 1854 -4933 6288 228 55 23 chrY 16653539 16656436 -8056643 + L1PA15 LINE L1 3371 6382 -434 353 81 16 0 chrY 16656436 16656498 -8056581 + (CA)n Simple_repeat Simple_repeat 2 64 0 6288 228 55 23 chrY 16656498 16656944 -8056135 + L1PA15 LINE L1 6382 6813 -3 784 211 37 5 chrY 16658262 16658452 -8054627 - L1PB4 LINE L1 -180 5976 5781 609 212 17 0 chrY 16658453 16658571 -8054508 + L1PB4 LINE L1 6016 6135 -21 1851 146 0 7 chrY 16658580 16658904 -8054175 - AluSc SINE Alu 0 334 13 27 81 0 0 chrY 16658963 16659025 -8054054 + AT_rich Low_complexity Low_complexity 1 62 0 24 0 0 0 chrY 16659107 16659131 -8053948 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chrY 16659315 16659343 -8053736 + AT_rich Low_complexity Low_complexity 1 28 0 2577 15 0 67 chrY 16659646 16659976 -8053103 + AluY SINE Alu 1 308 -3 3554 206 54 1 chrY 16659977 16660903 -8052176 - L1PA13 LINE L1 -19 6144 5141 820 120 8 0 chrY 16660903 16661036 -8052043 + L1PB1 LINE L1 6018 6151 0 1474 211 32 0 chrY 16661231 16661511 -8051568 + AluSx SINE Alu 1 289 -23 24 53 0 0 chrY 16661511 16661549 -8051530 + AT_rich Low_complexity Low_complexity 1 38 0 2360 224 50 34 chrY 16661550 16662342 -8050737 + L1MA7 LINE L1 5477 6281 -10 25 31 0 0 chrY 16662352 16662384 -8050695 + AT_rich Low_complexity Low_complexity 1 32 0 34 72 0 0 chrY 16662463 16662532 -8050547 + AT_rich Low_complexity Low_complexity 1 69 0 25 65 0 0 chrY 16662723 16662769 -8050310 + AT_rich Low_complexity Low_complexity 1 46 0 8028 262 73 20 chrY 16662776 16666581 -8046498 - L1MA4A LINE L1 -8 6997 2610 306 0 0 0 chrY 16666581 16666615 -8046464 + (TG)n Simple_repeat Simple_repeat 2 35 0 8028 262 73 20 chrY 16666615 16669373 -8043706 - L1MA4A LINE L1 -4395 2610 1 4564 272 53 8 chrY 16669371 16671162 -8041917 - L1 LINE L1 -2192 5373 3501 * 1639 241 43 16 chrY 16671153 16671592 -8041487 - L1PA15 LINE L1 0 6165 5715 * 1423 229 20 120 chrY 16671569 16671989 -8041090 - L1 LINE L1 -1117 5731 5270 * 1236 92 75 0 chrY 16671989 16672162 -8040917 + AluY SINE Alu 124 309 -2 1423 229 20 120 chrY 16672162 16672241 -8040838 - L1 LINE L1 -1578 5270 5185 7079 52 0 4 chrY 16672241 16673884 -8039195 + L1PA4 LINE L1 4512 6150 -5 1423 229 20 120 chrY 16673884 16674294 -8038785 - L1 LINE L1 -1663 5185 4831 * 2663 321 57 62 chrY 16674284 16674394 -8038685 - L1 LINE L1 -5295 1554 1445 1819 148 0 0 chrY 16674394 16674665 -8038414 - AluSq SINE Alu -4 309 39 2663 321 57 62 chrY 16674665 16676075 -8037004 - L1 LINE L1 -5404 1445 42 1349 251 63 4 chrY 16676115 16676574 -8036505 - L1MA9 LINE L1 -38 6274 5789 1252 218 11 0 chrY 16676574 16676849 -8036230 + HSMAR2 DNA Mariner 2 279 -1023 1516 224 26 3 chrY 16676854 16677202 -8035877 - HSMAR2 DNA Mariner -645 657 302 228 261 63 9 chrY 16677205 16677316 -8035763 + L1M4c LINE L1 2032 2148 -4236 6108 238 36 28 chrY 16677356 16678785 -8034294 + L1PA13 LINE L1 237 1677 -5110 1855 183 48 0 chrY 16678785 16679141 -8033938 - LTR25 LTR ERV1 0 794 422 1347 157 83 8 chrY 16679110 16679352 -8033727 - LTR25 LTR ERV1 -276 518 259 * 1228 261 60 18 chrY 16679381 16679830 -8033249 - L1M2 LINE L1 -4237 2870 2403 1498 222 4 98 chrY 16679833 16680283 -8032796 - L1M2 LINE L1 -5099 1931 1524 1879 193 102 7 chrY 16680283 16680730 -8032349 + LTR22 LTR ERVK 1 485 -7 5306 140 43 26 chrY 16680736 16680929 -8032150 + HERVK22 LTR ERVK 1 189 -6648 2126 132 0 6 chrY 16680929 16681240 -8031839 + AluY SINE Alu 1 309 -2 5306 140 43 26 chrY 16681240 16681936 -8031143 + HERVK22 LTR ERVK 189 905 -5932 * 14735 119 25 6 chrY 16681928 16682772 -8030307 + HERVK22 LTR ERVK 2325 3152 -3685 3904 104 48 96 chrY 16682772 16683494 -8029585 - LTR12 LTR ERV1 0 688 1 14735 119 25 6 chrY 16683494 16684857 -8028222 + HERVK22 LTR ERVK 3152 4573 -2264 4011 220 36 14 chrY 16685560 16687280 -8025799 - L1PB2 LINE L1 -41 6110 4355 759 154 53 18 chrY 16687290 16687459 -8025620 + L1MA1 LINE L1 5997 6171 -131 1412 193 0 0 chrY 16687502 16687745 -8025334 - AluSq SINE Alu -70 243 1 725 160 8 0 chrY 16687746 16687871 -8025208 + L1MA1 LINE L1 6157 6282 -20 192 178 43 49 chrY 16688044 16688207 -8024872 + A-rich Low_complexity Low_complexity 5 166 0 343 241 11 48 chrY 16688230 16688480 -8024599 + A-rich Low_complexity Low_complexity 1 240 0 291 234 5 73 chrY 16688499 16688691 -8024388 + A-rich Low_complexity Low_complexity 2 180 0 188 40 80 40 chrY 16688739 16688789 -8024290 + A-rich Low_complexity Low_complexity 3 54 0 279 111 10 61 chrY 16688844 16688943 -8024136 + (TAAAA)n Simple_repeat Simple_repeat 2 95 0 278 241 16 75 chrY 16688956 16689143 -8023936 + A-rich Low_complexity Low_complexity 2 177 0 204 236 34 34 chrY 16689158 16689247 -8023832 + A-rich Low_complexity Low_complexity 1 89 0 2005 278 88 58 chrY 16689257 16690846 -8022233 + L1MD3 LINE L1 5534 7169 -826 14552 180 7 11 chrY 16690847 16693718 -8019361 + L1PA8A LINE L1 1949 4806 -1340 5681 111 9 1 chrY 16693724 16694696 -8018383 + L1PA8A LINE L1 5143 6127 -4 2531 321 26 5 chrY 16694710 16695922 -8017157 - L1M1 LINE L1 -5292 2273 361 1382 222 49 15 chrY 16695922 16696246 -8016833 + MER21B LTR ERV1 63 397 -466 1939 198 34 86 chrY 16696286 16696876 -8016203 + LTR25 LTR ERV1 236 794 0 237 296 50 25 chrY 16696936 16697095 -8015984 - L1M2 LINE L1 -4242 2607 2445 40 21 0 0 chrY 16697181 16697228 -8015851 + AT_rich Low_complexity Low_complexity 1 47 0 302 216 40 14 chrY 16697403 16697477 -8015602 - MER51D LTR ERV1 -85 572 497 257 333 10 0 chrY 16699713 16699809 -8013270 + MIR SINE MIR 106 202 -60 2810 196 17 31 chrY 16700057 16700699 -8012380 - MER51A LTR ERV1 -1 633 1 1339 225 22 4 chrY 16700700 16700971 -8012108 - MER51A-int LTR ERV1 0 7816 7541 341 317 35 7 chrY 16701136 16701278 -8011801 - HERVFH21 LTR ERV1 -446 8180 8035 262 300 10 10 chrY 16701476 16701576 -8011503 - HERVFH21 LTR ERV1 -1683 4846 4747 * 752 180 82 5 chrY 16701571 16701765 -8011314 - HERVFH21 LTR ERV1 -2416 3530 3322 1740 183 24 17 chrY 16701779 16702194 -8010885 - HERVFH21 LTR ERV1 -6081 2039 1622 1010 301 10 24 chrY 16703235 16703527 -8009552 + AluJo SINE Alu 1 288 -14 258 270 0 14 chrY 16704067 16704141 -8008938 + (CATATA)n Simple_repeat Simple_repeat 2 74 0 400 250 0 0 chrY 16705038 16705126 -8007953 + FLAM_C SINE Alu 22 109 -24 6497 72 2 2 chrY 16705140 16706004 -8007075 - L1PA7 LINE L1 0 6154 5291 2924 166 48 62 chrY 16706018 16706261 -8006818 - L1P3 LINE L1 -5838 623 378 219 36 0 0 chrY 16706261 16706289 -8006790 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 2924 166 48 62 chrY 16706289 16706677 -8006402 - L1P3 LINE L1 -6083 378 1 1188 41 0 0 chrY 16706677 16706823 -8006256 + (TTTTC)n Simple_repeat Simple_repeat 4 149 0 428 236 38 0 chrY 16706838 16706944 -8006135 + L1PA16 LINE L1 6019 6128 -38 600 160 0 0 chrY 16706944 16707038 -8006041 - AluSc SINE Alu -78 231 138 31186 52 5 1 chrY 16708718 16714841 -7998238 - L1PA4 LINE L1 -3 6152 1 961 288 96 9 chrY 16715224 16715701 -7997378 - L1M4 LINE L1 -368 5816 5297 1057 315 20 6 chrY 16715861 16716217 -7996862 + MER89 LTR ERV1 197 557 -2 1317 224 4 0 chrY 16716390 16716635 -7996444 - AluSx SINE Alu -38 274 29 391 207 0 0 chrY 16717368 16717450 -7995629 + L1MB3 LINE L1 6065 6146 -37 25 31 0 0 chrY 16717518 16717550 -7995529 + AT_rich Low_complexity Low_complexity 1 32 0 1858 264 52 9 chrY 16717589 16718266 -7994813 + L1MB3 LINE L1 5478 6183 0 23 101 0 0 chrY 16718482 16718561 -7994518 + AT_rich Low_complexity Low_complexity 1 79 0 449 304 51 0 chrY 16719417 16719575 -7993504 + MER5A DNA MER1_type 6 171 -18 23 33 0 0 chrY 16719694 16719724 -7993355 + AT_rich Low_complexity Low_complexity 1 30 0 24 53 0 0 chrY 16720548 16720586 -7992493 + AT_rich Low_complexity Low_complexity 1 38 0 22 56 0 0 chrY 16720826 16720862 -7992217 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chrY 16721474 16721496 -7991583 + AT_rich Low_complexity Low_complexity 1 22 0 381 232 0 0 chrY 16722526 16722621 -7990458 + (TATATG)n Simple_repeat Simple_repeat 5 99 0 1585 271 97 35 chrY 16722621 16722709 -7990370 + L1MA5 LINE L1 4226 4307 -1839 1056 237 10 65 chrY 16722709 16723017 -7990062 - AluJo SINE Alu -11 291 1 1585 271 97 35 chrY 16723017 16723197 -7989882 + L1MA5 LINE L1 4307 4474 -1672 2191 102 0 49 chrY 16723197 16723521 -7989558 + AluY SINE Alu 1 308 -3 1585 271 97 35 chrY 16723521 16723872 -7989207 + L1MA5 LINE L1 4474 4802 -1344 2113 105 13 3 chrY 16723872 16724177 -7988902 + AluSg SINE Alu 1 308 -2 1585 271 97 35 chrY 16724177 16724627 -7988452 + L1MA5 LINE L1 4802 5363 -783 794 264 189 3 chrY 16724633 16724940 -7988139 + L1MA5 LINE L1 5518 5881 -419 272 200 14 0 chrY 16724953 16725023 -7988056 + (CATATA)n Simple_repeat Simple_repeat 2 72 0 186 288 136 30 chrY 16725163 16725295 -7987784 - MIR SINE MIR -26 236 91 1988 133 27 3 chrY 16725482 16725783 -7987296 - AluSq SINE Alu -1 312 5 1655 145 19 74 chrY 16726045 16726369 -7986710 + AluSg SINE Alu 1 306 -4 1870 76 0 24 chrY 16726690 16726939 -7986140 + AluY SINE Alu 69 311 0 3207 113 330 0 chrY 16727134 16727755 -7985324 - LTR12 LTR ERV1 0 826 1 5656 111 4 0 chrY 16727758 16728561 -7984518 - HERV9 LTR ERV1 -2 8397 7592 * 21437 132 13 11 chrY 16728558 16731882 -7981197 - HERV9 LTR ERV1 -5069 3330 1 4251 115 138 49 chrY 16731882 16732640 -7980439 - LTR12 LTR ERV1 0 826 1 187 353 90 6 chrY 16733347 16733391 -7979688 + MER5B DNA MER1_type 9 48 -130 192 40 0 0 chrY 16733391 16733416 -7979663 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 187 353 90 6 chrY 16733416 16733527 -7979552 + MER5B DNA MER1_type 48 177 -1 1625 196 51 20 chrY 16734447 16734800 -7978279 + THE1B LTR MaLR 1 364 0 9302 164 10 8 chrY 16734800 16736376 -7976703 + THE1B-int LTR MaLR 1 1580 0 1806 160 60 20 chrY 16736376 16736726 -7976353 + THE1B LTR MaLR 1 364 0 759 161 72 28 chrY 16738177 16738357 -7974722 - LTR56 LTR ERV1 -1 444 257 244 233 41 0 chrY 16738357 16738430 -7974649 + L1MA2 LINE L1 5985 6060 -244 676 309 57 55 chrY 16738603 16739043 -7974036 + L1MCa LINE L1 17 457 -5969 460 297 36 14 chrY 16739797 16740016 -7973063 - L1MC/D LINE L1 -678 5666 5443 301 328 45 0 chrY 16740428 16740562 -7972517 + HERVL74 LTR ERVL 1928 2067 -3618 7280 37 10 0 chrY 16740690 16742096 -7970983 + L1PA3 LINE L1 4756 6172 0 1450 185 53 63 chrY 16742253 16742632 -7970447 + THE1C LTR MaLR 1 375 0 22 35 0 0 chrY 16743582 16743611 -7969468 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chrY 16743707 16743742 -7969337 + AT_rich Low_complexity Low_complexity 1 35 0 2302 78 0 31 chrY 16744312 16744633 -7968446 + AluY SINE Alu 1 311 0 225 0 0 0 chrY 16744802 16744827 -7968252 + (T)n Simple_repeat Simple_repeat 1 25 0 281 256 3 14 chrY 16746309 16746390 -7966689 - L1MA6 LINE L1 -48 6251 6162 271 226 129 0 chrY 16746547 16746609 -7966470 - MER61E LTR ERV1 -4 565 496 281 175 25 38 chrY 16746676 16746756 -7966323 - LTR25 LTR ERV1 -501 293 215 * 322 176 11 143 chrY 16746736 16746827 -7966252 - MER61E LTR ERV1 -458 111 33 1743 221 38 21 chrY 16746840 16747261 -7965818 - LTR51 LTR ERV1 -212 459 32 387 235 96 17 chrY 16747514 16747629 -7965450 + L1MCa LINE L1 439 562 -5762 423 0 0 0 chrY 16747629 16747676 -7965403 + (CA)n Simple_repeat Simple_repeat 2 48 0 3718 229 81 51 chrY 16747678 16747900 -7965179 + L1PA15 LINE L1 3697 3911 -2254 1936 171 7 0 chrY 16747900 16748198 -7964881 + AluSp SINE Alu 5 304 -9 3718 229 81 51 chrY 16748198 16750356 -7962723 + L1PA15 LINE L1 3911 6161 -4 1655 195 7 3 chrY 16750367 16750659 -7962420 + AluSc SINE Alu 1 293 -16 231 61 0 0 chrY 16750663 16750696 -7962383 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 229 285 85 31 chrY 16750796 16750926 -7962153 + L1MC4 LINE L1 7903 8039 -3 42330 57 6 1 chrY 16751775 16757909 -7955170 + L1PA3 LINE L1 1 6155 0 1037 240 19 50 chrY 16758079 16758137 -7954942 + L1PA10 LINE L1 2489 2547 -3599 1904 141 3 10 chrY 16758137 16758434 -7954645 + AluY SINE Alu 1 295 -16 1037 240 19 50 chrY 16758434 16758696 -7954383 + L1PA10 LINE L1 2547 2799 -3347 10889 172 59 0 chrY 16758698 16761726 -7951353 + L1PA10 LINE L1 3065 6150 -18 285 51 0 0 chrY 16761860 16761899 -7951180 + (TTA)n Simple_repeat Simple_repeat 1 39 0 7602 161 24 7 chrY 16762518 16763801 -7949278 - L1P LINE L1 -4831 1315 11 4964 167 9 26 chrY 16763812 16764688 -7948391 - L1P3 LINE L1 -5591 870 10 25 0 0 0 chrY 16766099 16766124 -7946955 + AT_rich Low_complexity Low_complexity 1 25 0 1311 253 3 0 chrY 16766128 16766425 -7946654 - AluJb SINE Alu -9 303 6 27 96 0 0 chrY 16766494 16766577 -7946502 + AT_rich Low_complexity Low_complexity 1 83 0 220 250 0 54 chrY 16766646 16766758 -7946321 + T-rich Low_complexity Low_complexity 4 109 0 1946 113 3 44 chrY 16767692 16768078 -7945001 + AluY SINE Alu 1 374 0 715 211 96 32 chrY 16768365 16768616 -7944463 + L1MA7 LINE L1 6020 6286 -5 10443 103 18 4 chrY 16768758 16771267 -7941812 + L1P LINE L1 1453 4892 -1254 25 31 0 0 chrY 16772839 16772871 -7940208 + AT_rich Low_complexity Low_complexity 1 32 0 5727 98 5 12 chrY 16773362 16774171 -7938908 - L1PA7 LINE L1 0 6154 5352 717 109 0 0 chrY 16774190 16774282 -7938797 - AluY SINE Alu -217 94 3 1246 121 11 0 chrY 16774284 16774474 -7938605 - L1PA7 LINE L1 -778 5368 5177 2215 119 0 10 chrY 16774870 16775182 -7937897 - AluY SINE Alu 0 311 3 1528 136 41 4 chrY 16775266 16775509 -7937570 - L1PA7 LINE L1 -2 6152 5901 1693 190 24 66 chrY 16775509 16777211 -7935868 - LTR12 LTR ERV1 0 714 366 1564 181 32 64 chrY 16777239 16777581 -7935498 - LTR12 LTR ERV1 -1 713 383 1681 188 26 65 chrY 16777610 16781204 -7931875 - LTR12 LTR ERV1 0 714 72 1718 188 28 64 chrY 16781231 16783090 -7929989 - LTR12 LTR ERV1 0 714 363 1514 199 24 69 chrY 16783103 16783482 -7929597 - LTR12 LTR ERV1 0 714 388 1696 183 27 67 chrY 16783482 16784329 -7928750 - LTR12 LTR ERV1 0 714 381 1658 200 27 60 chrY 16784356 16786215 -7926864 - LTR12 LTR ERV1 0 714 363 1502 177 39 26 chrY 16786327 16786713 -7926366 + LTR12 LTR ERV1 385 714 0 * 1644 188 23 65 chrY 16786713 16787342 -7925737 + LTR12 LTR ERV1 388 714 0 1551 198 25 57 chrY 16787342 16787717 -7925362 + LTR12 LTR ERV1 144 714 0 1661 198 26 66 chrY 16787731 16788646 -7924433 + LTR12 LTR ERV1 366 714 0 1509 194 24 75 chrY 16788746 16789394 -7923685 - LTR12 LTR ERV1 0 714 381 1677 192 24 66 chrY 16789421 16790769 -7922310 - LTR12 LTR ERV1 0 714 366 1447 198 31 72 chrY 16790800 16791734 -7921345 - LTR12 LTR ERV1 0 714 381 1578 196 24 73 chrY 16791853 16793255 -7919824 - LTR12 LTR ERV1 0 714 380 1765 186 25 67 chrY 16793281 16794382 -7918697 - LTR12 LTR ERV1 0 714 366 1518 199 24 65 chrY 16794409 16794882 -7918197 - LTR12 LTR ERV1 0 714 381 1591 198 28 62 chrY 16794909 16795536 -7917543 - LTR12 LTR ERV1 0 714 270 1726 192 27 67 chrY 16795536 16796760 -7916319 - LTR12 LTR ERV1 0 714 381 1551 204 23 63 chrY 16796788 16797136 -7915943 - LTR12 LTR ERV1 0 714 381 1710 186 23 63 chrY 16797163 16797636 -7915443 - LTR12 LTR ERV1 0 714 381 1741 187 23 65 chrY 16797663 16798388 -7914691 - LTR12 LTR ERV1 0 714 381 1565 209 23 62 chrY 16798416 16798770 -7914309 - LTR12 LTR ERV1 0 714 375 1826 185 23 65 chrY 16798791 16800894 -7912185 - LTR12 LTR ERV1 0 714 381 1685 193 24 63 chrY 16800923 16802047 -7911032 - LTR12 LTR ERV1 0 2429 388 1663 187 22 71 chrY 16802047 16802779 -7910300 - LTR12 LTR ERV1 0 714 381 1634 199 23 63 chrY 16802806 16803527 -7909552 - LTR12 LTR ERV1 0 714 381 1740 179 23 68 chrY 16803556 16804410 -7908669 - LTR12 LTR ERV1 0 714 381 1669 194 25 62 chrY 16804438 16805908 -7907171 - LTR12 LTR ERV1 0 714 380 1693 184 24 64 chrY 16805935 16807035 -7906044 - LTR12 LTR ERV1 0 714 381 1674 189 24 63 chrY 16807062 16807659 -7905420 - LTR12 LTR ERV1 0 714 381 1607 197 22 64 chrY 16807686 16808049 -7905030 - LTR12 LTR ERV1 0 714 292 1651 191 24 65 chrY 16808226 16808853 -7904226 - LTR12 LTR ERV1 -2 712 375 1727 181 23 65 chrY 16808883 16809485 -7903594 - LTR12 LTR ERV1 0 714 381 1587 187 26 66 chrY 16809512 16809860 -7903219 - LTR12 LTR ERV1 0 714 381 1726 182 23 63 chrY 16809887 16810485 -7902594 - LTR12 LTR ERV1 0 714 381 1730 187 27 57 chrY 16810512 16811012 -7902067 - LTR12 LTR ERV1 0 714 270 1689 186 26 62 chrY 16811012 16812013 -7901066 - LTR12 LTR ERV1 0 2429 403 1687 201 24 63 chrY 16812013 16812878 -7900201 - LTR12 LTR ERV1 0 714 362 1782 182 24 65 chrY 16812888 16814737 -7898342 - LTR12 LTR ERV1 0 714 381 1750 193 24 63 chrY 16814764 16815862 -7897217 - LTR12 LTR ERV1 0 714 362 1788 182 26 60 chrY 16815889 16816889 -7896190 - LTR12 LTR ERV1 0 2428 384 1709 193 25 62 chrY 16816889 16818253 -7894826 - LTR12 LTR ERV1 0 714 362 1693 189 24 62 chrY 16818263 16819128 -7893951 - LTR12 LTR ERV1 0 714 362 1622 195 23 63 chrY 16819138 16819486 -7893593 - LTR12 LTR ERV1 0 714 381 1692 184 23 68 chrY 16819513 16820365 -7892714 - LTR12 LTR ERV1 0 714 381 1591 193 23 63 chrY 16820394 16820989 -7892090 - LTR12 LTR ERV1 0 714 381 1645 182 25 70 chrY 16821017 16821995 -7891084 - LTR12 LTR ERV1 0 714 381 1648 182 24 73 chrY 16822022 16822753 -7890326 - LTR12 LTR ERV1 0 714 381 1632 197 24 67 chrY 16822780 16824875 -7888204 - LTR12 LTR ERV1 0 714 377 1665 192 25 65 chrY 16824906 16828003 -7885076 - LTR12 LTR ERV1 0 714 363 1727 196 25 64 chrY 16828034 16831530 -7881549 - LTR12 LTR ERV1 0 714 380 1694 186 23 66 chrY 16831557 16832034 -7881045 - LTR12 LTR ERV1 0 714 381 1464 203 27 64 chrY 16832061 16832436 -7880643 - LTR12 LTR ERV1 0 714 270 1489 204 23 63 chrY 16832436 16832784 -7880295 - LTR12 LTR ERV1 0 714 381 1718 190 24 64 chrY 16832810 16833804 -7879275 - LTR12 LTR ERV1 0 714 362 1625 190 26 63 chrY 16833814 16834161 -7878918 - LTR12 LTR ERV1 0 714 381 1688 194 24 69 chrY 16834188 16835040 -7878039 - LTR12 LTR ERV1 0 714 380 1557 194 32 67 chrY 16835067 16835412 -7877667 - LTR12 LTR ERV1 0 714 382 1738 179 28 62 chrY 16835440 16836267 -7876812 - LTR12 LTR ERV1 0 714 197 1751 194 26 66 chrY 16836553 16838525 -7874554 - LTR12 LTR ERV1 0 714 366 1701 187 26 70 chrY 16838539 16839641 -7873438 - LTR12 LTR ERV1 0 714 381 1630 199 25 63 chrY 16839670 16840265 -7872814 - LTR12 LTR ERV1 0 714 381 1599 202 23 68 chrY 16840292 16841896 -7871183 - LTR12 LTR ERV1 0 714 380 1598 203 23 62 chrY 16841924 16842395 -7870684 - LTR12 LTR ERV1 0 714 381 1627 178 23 67 chrY 16842426 16842899 -7870180 - LTR12 LTR ERV1 0 714 381 1708 190 25 65 chrY 16842926 16845157 -7867922 - LTR12 LTR ERV1 0 714 129 1648 191 24 67 chrY 16845184 16846161 -7866918 - LTR12 LTR ERV1 0 714 363 1599 194 29 60 chrY 16846188 16846562 -7866517 - LTR12 LTR ERV1 0 2429 403 1576 203 25 63 chrY 16846562 16847539 -7865540 - LTR12 LTR ERV1 0 714 380 1572 188 24 67 chrY 16847566 16848417 -7864662 - LTR12 LTR ERV1 0 714 381 1580 194 26 71 chrY 16848444 16850422 -7862657 - LTR12 LTR ERV1 0 714 381 1746 189 25 65 chrY 16850453 16851799 -7861280 - LTR12 LTR ERV1 0 714 381 1672 194 25 63 chrY 16851828 16853678 -7859401 - LTR12 LTR ERV1 0 714 137 1688 197 25 67 chrY 16853706 16855940 -7857139 - LTR12 LTR ERV1 0 714 375 1665 197 26 69 chrY 16855967 16859075 -7854004 - LTR12 LTR ERV1 0 714 377 1520 198 24 69 chrY 16859102 16859481 -7853598 - LTR12 LTR ERV1 0 714 388 1623 198 23 63 chrY 16859481 16860079 -7853000 - LTR12 LTR ERV1 0 714 381 1663 202 26 64 chrY 16860106 16861957 -7851122 - LTR12 LTR ERV1 0 714 363 1580 190 23 74 chrY 16861984 16862336 -7850743 - LTR12 LTR ERV1 0 714 381 1615 198 33 61 chrY 16862363 16862726 -7850353 - LTR12 LTR ERV1 0 714 362 1693 193 27 68 chrY 16862738 16867099 -7845980 - LTR12 LTR ERV1 0 714 362 1660 184 23 64 chrY 16867126 16867978 -7845101 - LTR12 LTR ERV1 0 714 381 1688 192 23 63 chrY 16868005 16868603 -7844476 - LTR12 LTR ERV1 0 714 381 1730 186 23 67 chrY 16868630 16869231 -7843848 - LTR12 LTR ERV1 0 714 372 1696 191 25 70 chrY 16869258 16871618 -7841461 - LTR12 LTR ERV1 0 714 363 1692 196 25 61 chrY 16871645 16873565 -7839514 - LTR12 LTR ERV1 0 714 366 522 33 0 0 chrY 16923576 16923636 -7789443 - L1P LINE L1 -1575 4571 4512 242 235 12 25 chrY 16923621 16923702 -7789377 + L1 LINE L1 4517 4596 -1550 * 1222 92 75 6 chrY 16923715 16923889 -7789190 - AluY SINE Alu -2 309 124 1443 223 25 8 chrY 16923910 16924309 -7788770 + L1 LINE L1 4624 5029 -1117 * 1573 258 43 2 chrY 16924286 16924682 -7788397 + L1PA15 LINE L1 5715 6126 -39 1613 189 24 66 chrY 16925292 16926624 -7786455 + LTR12 LTR ERV1 381 714 0 1506 201 23 63 chrY 16926651 16927499 -7785580 + LTR12 LTR ERV1 381 714 0 1480 195 25 67 chrY 16927528 16928208 -7784871 + LTR12 LTR ERV1 362 714 0 1769 189 25 65 chrY 16928308 16931994 -7781085 - LTR12 LTR ERV1 0 714 362 1472 198 25 64 chrY 16932021 16932618 -7780461 - LTR12 LTR ERV1 0 714 381 1528 197 22 65 chrY 16932645 16933119 -7779960 - LTR12 LTR ERV1 0 714 381 1455 198 28 68 chrY 16933145 16933742 -7779337 - LTR12 LTR ERV1 0 714 381 1771 131 8 5 chrY 16933913 16934288 -7778791 + L1PA8A LINE L1 5162 5539 -592 1604 192 23 65 chrY 16934324 16935157 -7777922 + LTR12 LTR ERV1 381 714 0 1576 194 24 62 chrY 16935167 16935657 -7777422 + LTR12 LTR ERV1 362 714 0 1630 188 24 63 chrY 16935684 16937403 -7775676 + LTR12 LTR ERV1 381 714 0 1564 197 23 64 chrY 16937430 16938526 -7774553 + LTR12 LTR ERV1 381 714 0 1541 192 26 69 chrY 16938554 16939324 -7773755 + LTR12 LTR ERV1 380 714 0 1548 200 24 64 chrY 16939739 16940696 -7772383 - LTR12 LTR ERV1 0 714 381 1567 201 23 63 chrY 16940723 16941443 -7771636 - LTR12 LTR ERV1 0 714 381 1657 192 25 64 chrY 16941473 16944816 -7768263 - LTR12 LTR ERV1 0 714 381 1610 191 23 64 chrY 16944843 16945812 -7767267 - LTR12 LTR ERV1 0 714 381 1601 211 26 66 chrY 16945842 16948668 -7764411 - LTR12 LTR ERV1 0 714 381 1615 194 24 63 chrY 16948695 16951914 -7761165 - LTR12 LTR ERV1 0 714 381 1510 195 23 63 chrY 16951941 16952289 -7760790 - LTR12 LTR ERV1 0 714 381 1565 193 23 63 chrY 16952316 16952789 -7760290 - LTR12 LTR ERV1 0 714 381 1631 182 23 63 chrY 16952816 16953414 -7759665 - LTR12 LTR ERV1 0 714 381 1571 196 23 63 chrY 16953441 16954039 -7759040 - LTR12 LTR ERV1 0 714 381 1655 193 25 66 chrY 16954066 16957413 -7755666 - LTR12 LTR ERV1 0 714 381 1544 195 23 63 chrY 16957442 16958040 -7755039 - LTR12 LTR ERV1 0 714 381 1559 193 23 63 chrY 16958067 16958540 -7754539 - LTR12 LTR ERV1 0 714 381 1599 201 23 64 chrY 16958567 16959914 -7753165 - LTR12 LTR ERV1 0 714 381 1541 200 27 65 chrY 16959943 16964288 -7748791 - LTR12 LTR ERV1 0 714 72 1459 214 23 64 chrY 16964302 16964648 -7748431 - LTR12 LTR ERV1 0 714 383 1576 196 23 62 chrY 16964677 16965670 -7747409 - LTR12 LTR ERV1 0 714 381 1576 196 23 63 chrY 16965677 16966900 -7746179 - LTR12 LTR ERV1 0 714 381 1550 203 23 63 chrY 16966927 16967525 -7745554 - LTR12 LTR ERV1 0 714 381 1525 193 23 63 chrY 16967552 16968025 -7745054 - LTR12 LTR ERV1 0 714 381 1548 194 23 63 chrY 16968052 16968523 -7744556 - LTR12 LTR ERV1 0 714 381 1570 201 24 67 chrY 16968553 16970923 -7742156 - LTR12 LTR ERV1 0 714 381 1651 191 24 64 chrY 16970950 16974920 -7738159 - LTR12 LTR ERV1 0 714 362 1578 196 23 63 chrY 16974947 16975420 -7737659 - LTR12 LTR ERV1 0 714 381 1630 185 26 66 chrY 16975447 16976767 -7736312 - LTR12 LTR ERV1 0 714 381 1708 189 26 65 chrY 16976878 16978584 -7734495 - LTR12 LTR ERV1 0 714 72 1657 199 24 63 chrY 16978615 16980584 -7732495 - LTR12 LTR ERV1 0 714 381 1674 191 26 64 chrY 16980611 16981956 -7731123 - LTR12 LTR ERV1 0 714 381 1619 195 27 63 chrY 16981983 16983078 -7730001 - LTR12 LTR ERV1 0 714 381 1725 189 25 63 chrY 16983105 16985321 -7727758 - LTR12 LTR ERV1 0 714 362 1653 190 23 63 chrY 16985348 16986196 -7726883 - LTR12 LTR ERV1 0 714 381 1551 192 23 63 chrY 16986223 16987071 -7726008 - LTR12 LTR ERV1 0 714 381 1585 199 23 64 chrY 16987098 16988072 -7725007 - LTR12 LTR ERV1 0 714 381 1583 189 25 66 chrY 16988099 16988570 -7724509 - LTR12 LTR ERV1 0 714 381 1547 187 23 63 chrY 16988599 16988947 -7724132 - LTR12 LTR ERV1 0 714 381 1551 194 23 63 chrY 16988974 16990072 -7723007 - LTR12 LTR ERV1 0 714 381 1559 193 23 63 chrY 16990099 16990572 -7722507 - LTR12 LTR ERV1 0 714 381 1599 201 23 64 chrY 16990599 16991946 -7721133 - LTR12 LTR ERV1 0 714 381 1631 189 23 64 chrY 16991975 16993698 -7719381 - LTR12 LTR ERV1 0 714 381 1548 197 25 63 chrY 16993725 16994322 -7718757 - LTR12 LTR ERV1 0 714 381 1541 202 23 63 chrY 16994349 16995069 -7718010 - LTR12 LTR ERV1 0 714 381 1589 190 25 64 chrY 16995099 16996696 -7716383 - LTR12 LTR ERV1 0 714 381 1586 194 25 66 chrY 16996723 16998068 -7715011 - LTR12 LTR ERV1 0 714 72 1660 190 26 64 chrY 16998095 16999940 -7713139 - LTR12 LTR ERV1 0 714 362 1606 188 30 62 chrY 16999967 17000559 -7712520 - LTR12 LTR ERV1 0 714 383 1654 190 28 61 chrY 17000588 17001463 -7711616 - LTR12 LTR ERV1 0 714 268 1696 191 27 63 chrY 17001463 17004295 -7708784 - LTR12 LTR ERV1 0 714 381 1660 198 26 66 chrY 17004322 17005668 -7707411 - LTR12 LTR ERV1 0 714 72 1635 190 27 63 chrY 17005695 17006913 -7706166 - LTR12 LTR ERV1 0 714 362 1542 205 25 63 chrY 17006940 17007412 -7705667 - LTR12 LTR ERV1 0 714 381 1593 206 25 62 chrY 17007439 17007909 -7705170 - LTR12 LTR ERV1 0 714 381 1693 192 27 64 chrY 17007936 17009029 -7704050 - LTR12 LTR ERV1 0 714 381 1705 178 23 64 chrY 17009058 17009527 -7703552 - LTR12 LTR ERV1 0 714 381 1596 202 25 62 chrY 17009556 17010278 -7702801 - LTR12 LTR ERV1 0 714 380 1531 203 26 64 chrY 17010304 17010649 -7702430 - LTR12 LTR ERV1 0 714 383 1723 190 24 63 chrY 17010678 17011399 -7701680 - LTR12 LTR ERV1 0 714 381 1561 201 30 65 chrY 17011426 17012266 -7700813 - LTR12 LTR ERV1 0 714 380 1723 187 27 62 chrY 17012297 17013160 -7699919 - LTR12 LTR ERV1 0 714 362 1593 197 27 63 chrY 17013170 17014265 -7698814 - LTR12 LTR ERV1 0 714 381 1584 206 23 64 chrY 17014292 17015119 -7697960 - LTR12 LTR ERV1 0 714 400 1695 191 27 65 chrY 17015119 17016762 -7696317 - LTR12 LTR ERV1 0 714 381 1572 203 25 62 chrY 17016789 17017289 -7695790 - LTR12 LTR ERV1 0 2429 386 1643 188 25 65 chrY 17017289 17019759 -7693320 - LTR12 LTR ERV1 0 714 363 1633 201 23 63 chrY 17019788 17022385 -7690694 - LTR12 LTR ERV1 0 714 381 1740 190 24 64 chrY 17022412 17026129 -7686950 - LTR12 LTR ERV1 0 714 381 1624 191 24 64 chrY 17026156 17027750 -7685329 - LTR12 LTR ERV1 0 714 366 1599 194 23 63 chrY 17027780 17030128 -7682951 - LTR12 LTR ERV1 0 714 366 1654 189 24 66 chrY 17030155 17031503 -7681576 - LTR12 LTR ERV1 0 714 381 1616 193 23 63 chrY 17031530 17033126 -7679953 - LTR12 LTR ERV1 0 714 381 1568 194 23 63 chrY 17033155 17033878 -7679201 - LTR12 LTR ERV1 0 714 381 1568 193 23 64 chrY 17033905 17034503 -7678576 - LTR12 LTR ERV1 0 714 381 1572 196 23 64 chrY 17034530 17035502 -7677577 - LTR12 LTR ERV1 0 714 381 1512 195 23 63 chrY 17035531 17035879 -7677200 - LTR12 LTR ERV1 0 714 381 1579 185 24 64 chrY 17035906 17036377 -7676702 - LTR12 LTR ERV1 0 714 381 1619 187 26 66 chrY 17036406 17037629 -7675450 - LTR12 LTR ERV1 0 714 381 1599 199 24 63 chrY 17037656 17040391 -7672688 - LTR12 LTR ERV1 0 714 362 1478 211 23 64 chrY 17040405 17040751 -7672328 - LTR12 LTR ERV1 0 714 383 1484 203 26 65 chrY 17040780 17041878 -7671201 - LTR12 LTR ERV1 0 714 362 1578 197 23 63 chrY 17041905 17043253 -7669826 - LTR12 LTR ERV1 0 714 381 1555 201 23 63 chrY 17043280 17043753 -7669326 - LTR12 LTR ERV1 0 714 381 1528 197 23 63 chrY 17043780 17044378 -7668701 - LTR12 LTR ERV1 0 714 381 1613 195 23 63 chrY 17044405 17047252 -7665827 - LTR12 LTR ERV1 0 714 381 1566 192 23 64 chrY 17047279 17048127 -7664952 - LTR12 LTR ERV1 0 714 381 1514 195 23 63 chrY 17048154 17048502 -7664577 - LTR12 LTR ERV1 0 714 381 1565 193 23 63 chrY 17048529 17049002 -7664077 - LTR12 LTR ERV1 0 714 381 1632 182 23 63 chrY 17049029 17049627 -7663452 - LTR12 LTR ERV1 0 714 381 1572 193 23 64 chrY 17049654 17050250 -7662829 - LTR12 LTR ERV1 0 714 383 1579 195 23 63 chrY 17050279 17050627 -7662452 - LTR12 LTR ERV1 0 714 381 1631 183 23 64 chrY 17050654 17051377 -7661702 - LTR12 LTR ERV1 0 714 381 1615 190 24 64 chrY 17051404 17052729 -7660350 - LTR12 LTR ERV1 0 714 381 1784 147 11 8 chrY 17052729 17053204 -7659875 - L1PA8A LINE L1 -547 5574 5100 736 198 14 66 chrY 17053193 17053405 -7659674 - L1PA12 LINE L1 -255 5913 5713 * 2692 312 41 29 chrY 17053429 17055030 -7658049 + L1P LINE L1 1884 3502 -2644 28 48 0 0 chrY 17055034 17055076 -7658003 + AT_rich Low_complexity Low_complexity 1 42 0 219 80 80 50 chrY 17055082 17055182 -7657897 + (TATAA)n Simple_repeat Simple_repeat 5 107 0 1206 181 4 18 chrY 17055297 17055524 -7657555 - AluSg/x SINE Alu -5 307 84 2677 253 55 56 chrY 17055527 17056080 -7656999 + L1MC/D LINE L1 3627 4179 -1967 180 0 0 0 chrY 17056080 17056100 -7656979 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 2677 253 55 56 chrY 17056100 17056788 -7656291 + L1MC/D LINE L1 4179 4866 -1280 6408 85 32 36 chrY 17056791 17057459 -7655620 + L1PA8 LINE L1 4700 5369 -803 1931 151 3 3 chrY 17057459 17057758 -7655321 + AluSg SINE Alu 1 299 -11 6408 85 32 36 chrY 17057758 17058564 -7654515 + L1PA8 LINE L1 5369 6168 -4 433 229 30 24 chrY 17058574 17058720 -7654359 + L1MC/D LINE L1 5476 5619 -585 232 206 52 62 chrY 17058724 17058821 -7654258 + L1MC4 LINE L1 6608 6703 -1339 305 197 13 0 chrY 17058831 17058907 -7654172 + (TA)n Simple_repeat Simple_repeat 2 78 0 1097 259 41 0 chrY 17058925 17059219 -7653860 + L1PA16 LINE L1 5860 6165 -1 325 167 0 0 chrY 17060224 17060278 -7652801 + AluSq/x SINE Alu 66 119 -183 2357 90 0 3 chrY 17060303 17060615 -7652464 + AluY SINE Alu 1 311 0 2629 208 63 12 chrY 17060771 17061372 -7651707 - L1MA3 LINE L1 -226 7498 6867 4781 176 54 77 chrY 17061373 17062458 -7650621 - L1MA3 LINE L1 -4264 3301 2250 1860 166 0 3 chrY 17062458 17062753 -7650326 + AluSc SINE Alu 1 294 -15 4781 176 54 77 chrY 17062753 17063014 -7650065 - L1MA3 LINE L1 -5315 2250 1985 274 194 15 0 chrY 17063093 17063160 -7649919 + (CA)n Simple_repeat Simple_repeat 1 68 0 520 244 109 22 chrY 17063583 17063857 -7649222 - L1MC5 LINE L1 -444 7517 7220 968 266 107 14 chrY 17063868 17064418 -7648661 + L1ME3 LINE L1 2649 3249 -2897 990 276 71 49 chrY 17064804 17065257 -7647822 - MLT1C LTR MaLR -4 463 1 547 300 113 27 chrY 17065259 17065559 -7647520 + L1ME3 LINE L1 4036 4361 -1785 387 280 144 57 chrY 17065588 17066533 -7646546 + L1ME3 LINE L1 4425 5497 -670 626 294 70 49 chrY 17066552 17066857 -7646222 + L1ME3 LINE L1 5665 5985 -177 1927 135 3 14 chrY 17066857 17067153 -7645926 + AluSc SINE Alu 12 304 -5 626 294 70 49 chrY 17067153 17067333 -7645746 + L1ME3 LINE L1 5985 6160 -2 22 0 0 0 chrY 17067335 17067357 -7645722 + AT_rich Low_complexity Low_complexity 1 22 0 499 254 0 8 chrY 17067401 17067527 -7645552 + L1 LINE L1 3698 3822 -2324 614 266 0 37 chrY 17067541 17067729 -7645350 + AluJb SINE Alu 132 312 0 353 136 7 54 chrY 17067812 17067959 -7645120 + (TAAAA)n Simple_repeat Simple_repeat 5 144 0 297 208 8 56 chrY 17067961 17068086 -7644993 + A-rich Low_complexity Low_complexity 1 119 0 210 244 0 0 chrY 17068112 17068194 -7644885 + (AAATG)n Simple_repeat Simple_repeat 4 85 0 207 213 16 33 chrY 17068201 17068262 -7644817 + A-rich Low_complexity Low_complexity 5 64 0 1890 211 47 17 chrY 17068264 17068778 -7644301 + L1PA16 LINE L1 5602 6158 -5 1656 178 7 0 chrY 17069156 17069460 -7643619 + AluSx SINE Alu 1 306 -6 192 269 0 0 chrY 17069485 17069589 -7643490 + A-rich Low_complexity Low_complexity 2 105 0 211 266 38 0 chrY 17069596 17069675 -7643404 + (AAATG)n Simple_repeat Simple_repeat 4 85 0 41793 40 22 1 chrY 17069675 17075701 -7637378 + L1PA2 LINE L1 2 6154 -1 204 273 40 20 chrY 17075710 17075860 -7637219 + A-rich Low_complexity Low_complexity 5 157 0 368 327 0 88 chrY 17075891 17076050 -7637029 + AluJb SINE Alu 158 302 0 311 292 99 58 chrY 17076091 17076273 -7636806 + L1 LINE L1 2896 3098 -3048 323 96 19 0 chrY 17076273 17076325 -7636754 + (TAAAA)n Simple_repeat Simple_repeat 3 55 0 311 292 99 58 chrY 17076325 17076454 -7636625 + L1 LINE L1 3098 3220 -2926 315 290 67 77 chrY 17076527 17076810 -7636269 + L1 LINE L1 2818 2868 -3278 1823 147 46 0 chrY 17076810 17077095 -7635984 + AluSg SINE Alu 5 302 -8 315 290 67 77 chrY 17077095 17077537 -7635542 + L1 LINE L1 2868 3313 -2833 219 189 11 63 chrY 17077539 17077634 -7635445 + A-rich Low_complexity Low_complexity 5 94 0 189 178 0 0 chrY 17077705 17077750 -7635329 + A-rich Low_complexity Low_complexity 5 49 0 24 32 0 0 chrY 17077783 17077814 -7635265 + AT_rich Low_complexity Low_complexity 1 31 0 313 230 25 43 chrY 17077823 17077984 -7635095 + A-rich Low_complexity Low_complexity 2 159 0 25 51 0 0 chrY 17077986 17078025 -7635054 + AT_rich Low_complexity Low_complexity 1 39 0 215 279 39 19 chrY 17078103 17078257 -7634822 + A-rich Low_complexity Low_complexity 4 160 0 216 228 0 0 chrY 17078295 17078352 -7634727 + A-rich Low_complexity Low_complexity 3 59 0 214 248 43 34 chrY 17078390 17078507 -7634572 + (AAATG)n Simple_repeat Simple_repeat 3 120 0 237 120 0 60 chrY 17078604 17078654 -7634425 + (TTTC)n Simple_repeat Simple_repeat 1 47 0 504 322 70 24 chrY 17079515 17079888 -7633191 - MLT1B LTR MaLR 0 390 1 257 256 58 16 chrY 17080014 17080135 -7632944 - MER67C LTR ERV1 -8 702 577 1677 173 20 10 chrY 17080194 17080315 -7632764 + AluY SINE Alu 1 119 -192 561 99 0 0 chrY 17080315 17080396 -7632683 + (TA)n Simple_repeat Simple_repeat 1 81 0 1677 173 20 10 chrY 17080396 17080574 -7632505 + AluY SINE Alu 119 303 -8 891 195 44 49 chrY 17080678 17080883 -7632196 + pTR5 LTR ERV1 738 941 -1497 40654 58 14 2 chrY 17080886 17082109 -7630970 - L1P1 LINE L1 -449 5706 4500 8812 47 3 0 chrY 17082109 17083985 -7629094 - L1PA3 LINE L1 -3 6152 4273 40654 58 14 2 chrY 17083985 17088381 -7624698 - L1P1 LINE L1 -1655 4500 14 775 310 33 22 chrY 17088391 17088849 -7624230 - L1PA13 LINE L1 -4655 2132 1670 1641 298 43 22 chrY 17088852 17089568 -7623511 + L1PA16 LINE L1 5417 6147 -19 1180 213 45 48 chrY 17089623 17089914 -7623165 + AluSx SINE Alu 1 290 -12 414 308 84 67 chrY 17090003 17090525 -7622554 - L1M3c LINE L1 -4537 1428 898 22 0 0 0 chrY 17090689 17090711 -7622368 + AT_rich Low_complexity Low_complexity 1 22 0 233 153 28 68 chrY 17090873 17091049 -7622030 + (TTATA)n Simple_repeat Simple_repeat 5 173 0 288 176 88 13 chrY 17091107 17091266 -7621813 + (TA)n Simple_repeat Simple_repeat 2 172 0 21 0 0 0 chrY 17091366 17091387 -7621692 + AT_rich Low_complexity Low_complexity 1 21 0 282 182 26 0 chrY 17091403 17091480 -7621599 + (TA)n Simple_repeat Simple_repeat 1 79 0 2206 260 56 36 chrY 17092280 17094084 -7618995 - L1MA9 LINE L1 -347 5965 4112 490 310 128 55 chrY 17094110 17094633 -7618446 - L1M3c LINE L1 -5090 865 305 1283 294 59 25 chrY 17094672 17096030 -7617049 - L1MB1 LINE L1 -230 5938 4534 706 323 45 6 chrY 17096203 17096537 -7616542 - L1MB2 LINE L1 -148 6023 5677 428 249 49 25 chrY 17096535 17096702 -7616377 - L1MB2 LINE L1 -1291 4855 4683 * 257 50 0 25 chrY 17098487 17098527 -7614552 + (TTTC)n Simple_repeat Simple_repeat 3 41 0 491 204 0 26 chrY 17098527 17098640 -7614439 - L1PA10 LINE L1 -9 6159 6050 2469 187 63 10 chrY 17099998 17100503 -7612576 - LTR25 LTR ERV1 -273 521 49 6869 195 31 24 chrY 17100524 17102081 -7610998 - LTR25-int LTR ERV1 0 6996 5451 1958 132 0 4 chrY 17102081 17102408 -7610671 + AluY SINE Alu 3 328 0 6869 195 31 24 chrY 17102408 17102590 -7610489 - LTR25-int LTR ERV1 -1545 5451 2527 667 207 21 42 chrY 17102588 17102781 -7610298 - LTR25-int LTR ERV1 -2803 2414 2226 * 792 190 271 31 chrY 17102781 17103039 -7610040 - THE1B LTR MaLR 0 364 56 6347 176 3 1 chrY 17103079 17104118 -7608961 - THE1B-int LTR MaLR 0 1580 540 8006 253 49 22 chrY 17104118 17104211 -7608868 - LTR25-int LTR ERV1 -2293 4703 4614 5056 87 7 0 chrY 17104211 17104904 -7608175 - L1PA6 LINE L1 0 6154 5457 8006 253 49 22 chrY 17104904 17109594 -7603485 - LTR25-int LTR ERV1 -2382 4614 245 221 57 29 0 chrY 17109642 17109677 -7603402 + (TAAAAA)n Simple_repeat Simple_repeat 2 37 0 3623 186 12 92 chrY 17109752 17110603 -7602476 - LTR25 LTR ERV1 0 794 12 346 141 39 0 chrY 17110612 17110690 -7602389 - LTR25-int LTR ERV1 -4029 2967 2887 * 5761 247 46 33 chrY 17110668 17113900 -7599179 - LTR25-int LTR ERV1 -4236 2760 1 3283 198 17 66 chrY 17113917 17114752 -7598327 - LTR25 LTR ERV1 0 794 1 30 0 0 0 chrY 17114825 17114855 -7598224 + AT_rich Low_complexity Low_complexity 1 30 0 182 117 106 11 chrY 17114864 17114958 -7598121 + (TTAAA)n Simple_repeat Simple_repeat 1 103 0 293 284 37 52 chrY 17115209 17115343 -7597736 - MER5A DNA MER1_type -57 132 1 25 90 0 0 chrY 17116178 17116245 -7596834 + AT_rich Low_complexity Low_complexity 1 67 0 5226 230 38 16 chrY 17116474 17119073 -7594006 - L1MA2 LINE L1 -103 7620 4969 1029 261 27 0 chrY 17119075 17119336 -7593743 + AluSx SINE Alu 1 268 -44 23 0 0 0 chrY 17119342 17119365 -7593714 + AT_rich Low_complexity Low_complexity 1 23 0 2781 259 86 18 chrY 17119365 17119866 -7593213 - L1MA2 LINE L1 -2586 4979 4513 1474 122 5 5 chrY 17119866 17120080 -7592999 - AluSc SINE Alu -11 298 85 2781 259 86 18 chrY 17120080 17121264 -7591815 - L1MA2 LINE L1 -3052 4513 3172 * 6625 301 46 7 chrY 17121260 17123244 -7589835 - L1MA2 LINE L1 -5493 2072 10 183 139 0 0 chrY 17123925 17123961 -7589118 + (TTAA)n Simple_repeat Simple_repeat 1 36 0 1792 126 32 11 chrY 17123961 17124239 -7588840 - AluSg SINE Alu -26 284 1 1212 319 31 33 chrY 17125173 17125434 -7587645 - MER89-int LTR ERV1 -5183 1618 1358 1029 298 31 6 chrY 17125434 17125790 -7587289 - MLT1A1 LTR MaLR 0 365 1 1212 319 31 33 chrY 17125790 17126168 -7586911 - MER89-int LTR ERV1 -5443 1358 980 566 281 55 24 chrY 17126207 17126371 -7586708 - AluJo SINE Alu -23 289 121 769 174 0 0 chrY 17126371 17126503 -7586576 - MLT2C1 LTR ERVL -265 132 1 541 176 10 0 chrY 17126506 17126608 -7586471 + L1MD1 LINE L1 5803 5905 -337 * 3377 116 2 8 chrY 17126594 17127085 -7585994 + L1PA8 LINE L1 5650 6137 -35 1946 158 0 7 chrY 17127467 17127765 -7585314 + AluSq SINE Alu 1 296 -17 414 303 8 0 chrY 17128449 17128568 -7584511 - MER89 LTR ERV1 -14 545 426 455 233 4 0 chrY 17128657 17128794 -7584285 + L1MD3 LINE L1 6875 7042 -794 2681 221 49 7 chrY 17128847 17129459 -7583620 - MER89-int LTR ERV1 -2245 2972 2335 3525 195 50 12 chrY 17129463 17130283 -7582796 + L1MA1 LINE L1 5452 6302 0 270 240 99 23 chrY 17130314 17130485 -7582594 + L1MA2 LINE L1 3163 3346 -2800 * 717 46 0 0 chrY 17130476 17130563 -7582516 - L1PA4 LINE L1 -900 5246 5160 7351 40 2 0 chrY 17130564 17131484 -7581595 + L1PA4 LINE L1 5231 6152 -3 333 299 149 0 chrY 17131493 17131647 -7581432 + L1MA2 LINE L1 3324 3500 -2646 5782 66 12 0 chrY 17131655 17132416 -7580663 - L1P LINE L1 -1429 4717 3948 6888 63 9 0 chrY 17132503 17133891 -7579188 + L1PA5 LINE L1 4751 6148 -6 4683 82 34 3 chrY 17133891 17134532 -7578547 + L1PA5 LINE L1 5476 6141 -13 279 173 0 0 chrY 17134532 17134584 -7578495 + (TA)n Simple_repeat Simple_repeat 1 52 0 2207 265 14 5 chrY 17134596 17135215 -7577864 + L1MA2 LINE L1 3511 4135 -2011 4892 246 76 60 chrY 17135219 17136754 -7576325 - MER52A LTR ERV1 -4 1751 301 226 343 14 0 chrY 17137467 17137540 -7575539 - MER52A LTR ERV1 -1681 74 1 2377 223 39 55 chrY 17137540 17138415 -7574664 + L1MA2 LINE L1 4132 4992 -1154 1097 105 0 0 chrY 17138415 17138558 -7574521 + AluY SINE Alu 154 296 -15 4669 193 37 17 chrY 17138558 17139853 -7573226 + L1MA2 LINE L1 4990 6304 0 235 281 33 8 chrY 17140057 17140178 -7572901 + L1M4c LINE L1 1984 2107 -4923 544 305 57 7 chrY 17140262 17140602 -7572477 + L1M4c LINE L1 2053 2814 -4293 3471 256 26 11 chrY 17140742 17141250 -7571829 + L1PA15 LINE L1 4187 4686 -1479 423 0 0 0 chrY 17141250 17141297 -7571782 + (TAAA)n Simple_repeat Simple_repeat 3 49 0 3471 256 26 11 chrY 17141297 17142065 -7571014 + L1PA15 LINE L1 4686 5503 -662 2128 96 10 19 chrY 17142065 17142379 -7570700 + AluY SINE Alu 1 311 0 3471 256 26 11 chrY 17142379 17143033 -7570046 + L1PA15 LINE L1 5503 6146 -19 342 240 0 0 chrY 17143266 17143341 -7569738 - L1PA16 LINE L1 -193 5973 5899 1662 209 62 7 chrY 17143349 17143766 -7569313 - L1PA16 LINE L1 -364 5802 5363 559 258 47 56 chrY 17143800 17144033 -7569046 + L1M3a LINE L1 3 233 -5722 244 432 22 0 chrY 17144195 17144334 -7568745 + L1M3a LINE L1 363 504 -5451 1489 248 85 21 chrY 17144571 17144804 -7568275 + L1 LINE L1 4170 4387 -1759 434 153 0 59 chrY 17144804 17144889 -7568190 - MADE1 DNA Mariner 0 80 1 1489 248 85 21 chrY 17144889 17145376 -7567703 + L1 LINE L1 4387 4936 -1210 288 0 0 0 chrY 17145376 17145408 -7567671 + (CAAT)n Simple_repeat Simple_repeat 1 32 0 1047 275 12 0 chrY 17145480 17145724 -7567355 + L1M1 LINE L1 1518 1764 -5801 444 297 48 14 chrY 17145740 17145885 -7567194 - MER61D LTR ERV1 -14 487 338 936 227 20 0 chrY 17146346 17146549 -7566530 + L1M1 LINE L1 1771 1977 -5588 1370 289 62 26 chrY 17148083 17148975 -7564104 + Tigger3b DNA MER2_type 217 1140 -91 1292 82 8 26 chrY 17149008 17149249 -7563830 - L1P2 LINE L1 -368 5787 5548 350 103 0 29 chrY 17149251 17149319 -7563760 + L1PA6 LINE L1 6089 6154 0 997 277 62 16 chrY 17149325 17149567 -7563512 + HUERS-P2 LTR ERV1 293 545 -2543 12219 199 34 43 chrY 17149642 17150882 -7562197 + HUERS-P2 LTR ERV1 534 1785 -1303 3581 109 2 6 chrY 17150882 17151395 -7561684 - MER9 LTR ERVK 0 511 1 12219 199 34 43 chrY 17151395 17151727 -7561352 + HUERS-P2 LTR ERV1 1785 2119 -969 1847 116 0 0 chrY 17151727 17151969 -7561110 - AluY SINE Alu -69 242 1 12219 199 34 43 chrY 17151969 17152975 -7560104 + HUERS-P2 LTR ERV1 2119 3088 0 1497 171 32 141 chrY 17152979 17153419 -7559660 + LTR1 LTR ERV1 9 400 -385 2315 124 8 11 chrY 17153432 17153788 -7559291 + THE1A LTR MaLR 1 355 0 3273 109 17 0 chrY 17153788 17154263 -7558816 + THE1A-int LTR MaLR 1 483 -1097 * 5773 150 6 0 chrY 17154256 17155137 -7557942 + THE1A-int LTR MaLR 695 1580 0 2283 142 3 0 chrY 17155137 17155489 -7557590 + THE1A LTR MaLR 1 353 -2 1961 201 10 31 chrY 17155491 17155879 -7557200 + LTR1 LTR ERV1 406 785 0 339 127 0 0 chrY 17156504 17156559 -7556520 - AluSc SINE Alu 0 299 245 1034 193 0 16 chrY 17156559 17156746 -7556333 - AluSq SINE Alu -129 184 1 1055 85 13 0 chrY 17157195 17157348 -7555731 + L1PA5 LINE L1 5997 6151 -3 21 0 0 0 chrY 17158379 17158400 -7554679 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chrY 17158665 17158689 -7554390 + AT_rich Low_complexity Low_complexity 1 24 0 38708 85 5 1 chrY 17158972 17165084 -7547995 - L1PA5 LINE L1 -6 6148 11 3340 182 27 10 chrY 17167040 17167638 -7545441 - LTR19C LTR ERV1 0 779 172 4432 189 10 20 chrY 17167640 17168455 -7544624 - HUERS-P3 LTR ERV1 -5476 3443 2637 3457 246 78 33 chrY 17168449 17169258 -7543821 - HUERS-P3 LTR ERV1 -4639 2357 1289 * 4751 111 12 6 chrY 17169258 17169941 -7543138 + LTR12 LTR ERV1 2 688 0 3457 246 78 33 chrY 17169941 17170331 -7542748 - HUERS-P3 LTR ERV1 -5707 1289 918 376 241 0 0 chrY 17170342 17170421 -7542658 - HUERS-P3 LTR ERV1 -8086 833 755 1657 259 54 47 chrY 17170738 17171245 -7541834 - HUERS-P3 LTR ERV1 -8310 609 96 1175 164 188 12 chrY 17171245 17171501 -7541578 + AluSx SINE Alu 2 302 0 1657 259 54 47 chrY 17171501 17171584 -7541495 - HUERS-P3 LTR ERV1 -8823 96 15 2443 171 40 57 chrY 17171739 17172270 -7540809 - LTR19C LTR ERV1 -257 522 1 275 310 45 34 chrY 17172397 17172665 -7540414 - MER67C LTR ERV1 -75 635 365 769 304 22 29 chrY 17173028 17173436 -7539643 - L1PA13 LINE L1 -4710 2077 1673 789 283 38 26 chrY 17173442 17173669 -7539410 + L1MA3 LINE L1 5417 5657 -648 369 0 0 0 chrY 17173669 17173710 -7539369 + (TAA)n Simple_repeat Simple_repeat 2 42 0 789 283 38 26 chrY 17173710 17173912 -7539167 + L1MA3 LINE L1 5657 5855 -450 423 0 0 0 chrY 17174654 17174701 -7538378 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 17390 21 0 0 chrY 17174701 17177506 -7535573 - L1HS LINE L1 -11 6144 3340 5407 41 0 0 chrY 17177502 17178192 -7534887 + L1P LINE L1 2721 3410 -2736 * 425 286 74 16 chrY 17178307 17178496 -7534583 - LTR36 LTR ERV1 -411 200 1 23227 68 7 1 chrY 17178843 17184886 -7528193 + L1PA4 LINE L1 2 6151 -4 459 228 117 7 chrY 17185102 17185247 -7527832 - LTR36-int LTR ERV1 -181 6150 5990 228 184 0 0 chrY 17185378 17185427 -7527652 + (CA)n Simple_repeat Simple_repeat 2 50 0 2643 270 77 58 chrY 17185445 17187390 -7525689 - LTR36-int LTR ERV1 -611 5335 3581 24 53 0 0 chrY 17187549 17187587 -7525492 + AT_rich Low_complexity Low_complexity 1 38 0 1368 268 49 59 chrY 17188421 17188993 -7524086 - LTR36 LTR ERV1 0 611 46 1410 245 9 7 chrY 17189017 17189445 -7523634 + L1 LINE L1 4729 5157 -989 859 95 32 0 chrY 17189442 17189568 -7523511 - L1P3 LINE L1 -633 5521 5392 * 327 302 53 42 chrY 17190034 17190434 -7522645 + L1M4c LINE L1 1250 2053 -4330 5715 78 9 16 chrY 17190546 17191356 -7521723 + L1PA7 LINE L1 5344 6147 -7 25 0 0 0 chrY 17191362 17191387 -7521692 + AT_rich Low_complexity Low_complexity 1 25 0 313 319 43 18 chrY 17191627 17191790 -7521289 - L1MEc LINE L1 -3946 2617 2451 464 288 44 26 chrY 17192446 17192675 -7520404 - L1M2 LINE L1 -4346 2503 2271 307 346 44 34 chrY 17192683 17192888 -7520191 - L1MEc LINE L1 -4999 1385 1179 8796 222 38 17 chrY 17192902 17194829 -7518250 + L1M1 LINE L1 490 2456 -5109 3923 241 186 10 chrY 17194826 17196295 -7516784 + L1M1 LINE L1 3760 5487 -2078 * 404 289 16 0 chrY 17196790 17196911 -7516168 + LTR55 LTR ERV 4 126 -422 2185 107 0 3 chrY 17196913 17197204 -7515875 - AluY SINE Alu -21 290 1 15093 221 41 29 chrY 17197502 17197790 -7515289 - L1M1 LINE L1 -676 7045 6762 1670 197 7 7 chrY 17197790 17198099 -7514980 + AluSx SINE Alu 4 312 0 15093 221 41 29 chrY 17198099 17201287 -7511792 - L1M1 LINE L1 -959 6762 3614 483 18 0 0 chrY 17201287 17201343 -7511736 + (TG)n Simple_repeat Simple_repeat 1 56 0 15093 221 41 29 chrY 17201343 17204799 -7508280 - L1M1 LINE L1 -4107 3614 10 21 82 0 0 chrY 17204947 17204996 -7508083 + AT_rich Low_complexity Low_complexity 1 49 0 291 319 43 6 chrY 17205019 17205182 -7507897 - L1M2 LINE L1 -5137 1632 1464 9482 42 2 0 chrY 17205484 17206678 -7506401 - L1PA3 LINE L1 -2237 3909 2714 12148 37 1 1 chrY 17206678 17208941 -7504138 + L1PA3 LINE L1 3903 6171 0 385 263 26 77 chrY 17210010 17210166 -7502913 - L1M2 LINE L1 -5803 966 819 403 307 59 46 chrY 17210171 17210477 -7502602 - Cheshire DNA MER1_type -1851 569 260 479 280 48 19 chrY 17210882 17211089 -7501990 + LTR55 LTR ERV 7 219 -329 274 316 53 62 chrY 17211422 17211726 -7501353 + LTR55 LTR ERV 77 377 -171 3242 216 54 75 chrY 17214443 17215119 -7497960 + Tigger3b DNA MER2_type 1 642 -2386 1020 268 80 0 chrY 17215119 17215395 -7497684 + AluJo SINE Alu 5 302 0 3242 216 54 75 chrY 17215395 17215935 -7497144 + Tigger3b DNA MER2_type 642 1192 -39 851 19 0 19 chrY 17216874 17216981 -7496098 + L1PA2 LINE L1 6047 6151 -4 267 231 103 17 chrY 17217963 17218080 -7494999 - Cheshire DNA MER1_type -2159 261 135 249 258 116 45 chrY 17218706 17218861 -7494218 + LTR55 LTR ERV 4 169 -379 280 329 91 9 chrY 17219010 17219220 -7493859 + LTR55 LTR ERV 300 526 -22 365 276 57 84 chrY 17219261 17219558 -7493521 + LTR55 LTR ERV 102 390 -158 1903 138 0 14 chrY 17222222 17222504 -7490575 - AluSg SINE Alu -24 286 9 250 208 0 0 chrY 17222554 17222602 -7490477 + 5S rRNA rRNA 74 121 0 24 0 0 0 chrY 17222992 17223016 -7490063 + AT_rich Low_complexity Low_complexity 1 24 0 373 200 39 2 chrY 17223259 17223608 -7489471 + (TA)n Simple_repeat Simple_repeat 1 361 0 1982 174 51 10 chrY 17223731 17224231 -7488848 - L1MA2 LINE L1 0 6304 5752 570 154 26 4 chrY 17224279 17224395 -7488684 + L1M1 LINE L1 5389 5503 -683 237 51 77 0 chrY 17224388 17224427 -7488652 + L1M1 LINE L1 5462 5503 -801 * 237 51 77 0 chrY 17224420 17224459 -7488620 + L1M1 LINE L1 5462 5503 -799 * 310 140 0 0 chrY 17224452 17224509 -7488570 + L1M1 LINE L1 5462 5518 -784 1013 151 245 4 chrY 17224556 17224801 -7488278 + L1M1 LINE L1 5456 5759 -545 2151 227 76 50 chrY 17224837 17225655 -7487424 + Tigger3(Golem) DNA MER2_type 2152 2990 -39 1079 221 123 29 chrY 17227232 17227581 -7485498 - MER61A-int LTR ERV1 -4835 382 1 1778 216 9 9 chrY 17227582 17227925 -7485154 - MER61A LTR ERV1 0 343 1 337 240 13 0 chrY 17228525 17228600 -7484479 + MER52A LTR ERV1 1643 1718 -37 1324 212 11 19 chrY 17228856 17229125 -7483954 + AluSx SINE Alu 1 267 -45 386 168 17 84 chrY 17229167 17229286 -7483793 - MER83A-int LTR ERV1 -2545 1740 1630 1838 174 0 0 chrY 17229569 17229862 -7483217 - AluSc SINE Alu -16 293 1 37906 73 5 3 chrY 17229885 17236027 -7477052 + L1PA4 LINE L1 2 6155 0 3057 49 0 5 chrY 17236027 17236414 -7476665 + L1PA5 LINE L1 5770 6154 0 306 50 0 0 chrY 17236757 17236797 -7476282 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 1638 119 0 0 chrY 17236797 17237015 -7476064 - AluSx SINE Alu -90 222 5 313 262 21 50 chrY 17237485 17237626 -7475453 - LTR45 LTR ERV1 0 525 389 21 0 0 0 chrY 17238655 17238676 -7474403 + AT_rich Low_complexity Low_complexity 1 21 0 1626 113 84 0 chrY 17238727 17238966 -7474113 - AluSg SINE Alu -17 293 35 351 229 64 90 chrY 17239892 17240148 -7472931 + LTR25 LTR ERV1 9 293 -424 1698 228 63 29 chrY 17240176 17240699 -7472380 + LTR25 LTR ERV1 254 794 0 1157 213 62 18 chrY 17240718 17240990 -7472089 + HUERS-P3 LTR ERV1 4 287 -6709 14414 252 38 28 chrY 17241021 17243110 -7469969 + HUERS-P3 LTR ERV1 366 2434 -6485 2310 115 0 6 chrY 17243110 17243423 -7469656 + AluY SINE Alu 1 311 0 14414 252 38 28 chrY 17243423 17246704 -7466375 + HUERS-P3 LTR ERV1 2434 5646 -3273 2474 276 19 6 chrY 17246718 17247415 -7465664 + HUERS-P3 LTR ERV1 5758 6463 -2456 1404 255 91 0 chrY 17247422 17247853 -7465226 + HUERS-P3 LTR ERV1 6724 7193 -1726 1138 182 31 22 chrY 17247899 17248219 -7464860 + LTR25 LTR ERV1 378 565 -4 2568 208 44 53 chrY 17248965 17249630 -7463449 - LTR25 LTR ERV1 -135 659 1 8076 299 42 21 chrY 17249632 17252556 -7460523 - HUERS-P3 LTR ERV1 -3 8916 5931 962 122 0 0 chrY 17252556 17252687 -7460392 + AluSc SINE Alu 1 131 -178 5480 130 39 32 chrY 17252687 17254959 -7458120 + SVA Other Other 28 1386 0 1154 137 6 0 chrY 17254966 17255134 -7457945 + AluSg/x SINE Alu 122 290 -22 16607 274 33 27 chrY 17255138 17260176 -7452903 - HUERS-P3 LTR ERV1 -2982 5937 865 2087 142 3 10 chrY 17260176 17260487 -7452592 + AluSp SINE Alu 1 309 -4 16607 274 33 27 chrY 17260487 17260583 -7452496 - HUERS-P3 LTR ERV1 -8054 865 771 2217 225 19 28 chrY 17260822 17261391 -7451688 - HUERS-P3 LTR ERV1 -6174 822 259 325 219 10 62 chrY 17261395 17261491 -7451588 - HUERS-P3 LTR ERV1 -6905 91 1 2398 231 100 29 chrY 17261508 17262136 -7450943 - LTR25 LTR ERV1 0 794 105 2138 124 0 7 chrY 17262136 17262443 -7450636 - AluSc SINE Alu -4 305 1 2398 231 100 29 chrY 17262443 17262546 -7450533 - LTR25 LTR ERV1 -689 105 11 280 294 169 0 chrY 17262560 17262696 -7450383 - MSTA LTR MaLR -269 159 1 2654 218 38 48 chrY 17262698 17262899 -7450180 - MSTA-int LTR MaLR -2 1578 1377 2136 102 19 38 chrY 17262899 17263214 -7449865 + AluSc SINE Alu 1 309 0 2654 218 38 48 chrY 17263214 17263719 -7449360 - MSTA-int LTR MaLR -203 1377 879 471 240 50 0 chrY 17263801 17263922 -7449157 + Cheshire DNA MER1_type 241 367 -2053 249 57 0 0 chrY 17263965 17264000 -7449079 + (CA)n Simple_repeat Simple_repeat 2 36 0 568 263 16 52 chrY 17264121 17264315 -7448764 + L1M3a LINE L1 11 197 -5758 6075 243 58 44 chrY 17265188 17267450 -7445629 + L1PA12 LINE L1 678 2905 -4679 6357 175 41 38 chrY 17267450 17268727 -7444352 + HSMAR1 DNA Mariner 3 1283 -4 6075 243 58 44 chrY 17268727 17269479 -7443600 + L1PA12 LINE L1 2905 3644 -3940 198 0 0 0 chrY 17269479 17269501 -7443578 + (CAA)n Simple_repeat Simple_repeat 3 24 0 6075 243 58 44 chrY 17269501 17270600 -7442479 + L1PA12 LINE L1 3644 6195 -1389 399 329 30 8 chrY 17270962 17271199 -7441880 + L1M4 LINE L1 4696 4937 -1209 21 0 0 0 chrY 17271386 17271407 -7441672 + AT_rich Low_complexity Low_complexity 1 21 0 2042 100 3 28 chrY 17272327 17272659 -7440420 + AluSq SINE Alu 1 325 0 377 248 55 0 chrY 17272720 17272829 -7440250 - LTR54B LTR ERV1 -383 115 1 463 140 120 0 chrY 17272878 17272990 -7440089 - MER57-int LTR ERV1 -549 6988 6884 307 236 51 72 chrY 17273252 17273447 -7439632 - L1M4 LINE L1 -3810 2336 2146 533 216 78 0 chrY 17273455 17273571 -7439508 - THE1C LTR MaLR -248 127 3 7729 164 70 15 chrY 17273573 17275068 -7438011 - THE1C-int LTR MaLR 0 1580 4 1528 176 66 36 chrY 17275071 17275435 -7437644 - THE1C LTR MaLR 0 375 1 1600 257 27 37 chrY 17275435 17275948 -7437131 + MER67C LTR ERV1 188 695 -15 264 235 0 49 chrY 17276094 17276175 -7436904 + L1 LINE L1 3349 3425 -2721 447 256 278 19 chrY 17276221 17276588 -7436491 + L1 LINE L1 3349 3810 -2336 941 114 38 0 chrY 17276839 17276997 -7436082 + AluSg SINE Alu 1 164 -146 294 77 0 19 chrY 17276997 17277049 -7436030 + AluSg/q SINE Alu 253 303 0 216 0 0 0 chrY 17278603 17278627 -7434452 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1718 55 97 100 chrY 17279232 17279541 -7433538 + AluY SINE Alu 1 308 -3 1214 228 7 11 chrY 17281648 17281933 -7431146 + AluJb SINE Alu 13 296 -16 418 248 65 74 chrY 17282205 17282515 -7430564 - L1MC4 LINE L1 0 8042 7736 2084 125 0 0 chrY 17283012 17283315 -7429764 - AluSx SINE Alu -9 303 1 222 37 0 0 chrY 17283891 17283918 -7429161 + (TTG)n Simple_repeat Simple_repeat 1 27 0 1752 159 0 0 chrY 17283918 17284194 -7428885 - AluSq SINE Alu -37 276 1 279 235 29 0 chrY 17284572 17284640 -7428439 + L1MC4 LINE L1 7450 7519 -523 25 31 0 0 chrY 17284884 17284916 -7428163 + AT_rich Low_complexity Low_complexity 1 32 0 626 194 142 8 chrY 17284943 17285077 -7428002 + FRAM SINE Alu 14 165 -11 1380 220 102 9 chrY 17285133 17285465 -7427614 - MLT1A1 LTR MaLR -2 363 1 1165 208 59 28 chrY 17285746 17286034 -7427045 - AluJb SINE Alu -4 298 2 25 31 0 0 chrY 17286105 17286137 -7426942 + AT_rich Low_complexity Low_complexity 1 32 0 27 29 0 0 chrY 17286706 17286740 -7426339 + AT_rich Low_complexity Low_complexity 1 34 0 28 48 0 0 chrY 17286821 17286863 -7426216 + AT_rich Low_complexity Low_complexity 1 42 0 335 264 85 8 chrY 17287174 17287303 -7425776 - L1M4 LINE L1 -3465 3179 3041 * 2163 252 179 12 chrY 17287294 17288142 -7424937 - L1M4 LINE L1 -5193 1349 360 782 271 24 8 chrY 17288201 17288448 -7424631 - L1M4 LINE L1 -6281 261 11 253 357 32 76 chrY 17288768 17288953 -7424126 + MER5B DNA MER1_type 2 178 0 2293 79 7 0 chrY 17288979 17289271 -7423808 - AluY SINE Alu -17 294 1 1459 189 0 25 chrY 17290851 17291132 -7421947 - AluSx SINE Alu -17 295 22 351 65 0 0 chrY 17291749 17291795 -7421284 + (GA)n Simple_repeat Simple_repeat 1 46 0 234 0 0 0 chrY 17291795 17291821 -7421258 + (TG)n Simple_repeat Simple_repeat 2 27 0 2157 107 14 0 chrY 17292044 17292333 -7420746 + AluSg SINE Alu 4 296 -14 1285 181 7 6 chrY 17292853 17293135 -7419944 - MER4B LTR ERV1 0 610 261 430 167 89 0 chrY 17293136 17293226 -7419853 - MER4A LTR ERV1 -566 98 1 2005 143 0 0 chrY 17294911 17295212 -7417867 + AluSx SINE Alu 6 306 -6 2109 85 25 0 chrY 17295278 17295561 -7417518 + AluY SINE Alu 1 290 -21 2218 82 7 10 chrY 17295626 17295931 -7417148 - AluYb8 SINE Alu -9 309 6 183 80 0 0 chrY 17295936 17295961 -7417118 + (TTCCC)n Simple_repeat Simple_repeat 1 25 0 3788 33 0 0 chrY 17296124 17296581 -7416498 - L1PA3 LINE L1 -895 5251 4795 7401 28 7 0 chrY 17296581 17297492 -7415587 + L1PA3 LINE L1 5258 6177 0 2020 196 74 70 chrY 17297753 17298428 -7414651 + L1MA1 LINE L1 4374 5051 -1095 3429 230 48 9 chrY 17298441 17299188 -7413891 + L1 LINE L1 23 798 -6767 1428 175 35 166 chrY 17299187 17299872 -7413207 + L1MA1 LINE L1 5708 6302 0 * 3827 206 68 12 chrY 17299859 17300917 -7412162 + L1PA16 LINE L1 5020 6130 -36 2782 231 84 10 chrY 17300944 17301840 -7411239 + L1 LINE L1 4672 5633 -1932 418 255 20 103 chrY 17301907 17302280 -7410799 + L1 LINE L1 4049 4367 -1779 361 317 38 55 chrY 17302345 17302638 -7410441 + L1M4 LINE L1 514 801 -5741 246 195 0 0 chrY 17302886 17302927 -7410152 - MER2 DNA MER2_type -304 41 1 244 176 73 15 chrY 17302936 17303004 -7410075 + L1MA9 LINE L1 5588 5659 -653 1297 230 64 21 chrY 17303005 17303471 -7409608 + L1MA9 LINE L1 5791 6276 -36 893 254 14 84 chrY 17303495 17303912 -7409167 - L1 LINE L1 -2415 3731 3344 * 1196 251 157 20 chrY 17303879 17304441 -7408638 + L1 LINE L1 3711 4349 -1797 1505 257 59 59 chrY 17304476 17305154 -7407925 - L1PA15-16 LINE L1 -1367 5482 4805 5035 100 11 4 chrY 17305162 17305914 -7407165 + L1PA6 LINE L1 4300 5056 -1090 1178 21 7 0 chrY 17305911 17306051 -7407028 - L1PA4 LINE L1 -278 5877 5737 * 2254 58 0 3 chrY 17306051 17306343 -7406736 + L1PA4 LINE L1 5862 6152 -3 3372 127 39 14 chrY 17306350 17306919 -7406160 + L1PB3 LINE L1 5572 6154 0 198 0 0 0 chrY 17307028 17307050 -7406029 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 6324 75 19 13 chrY 17307054 17308158 -7404921 + L1PA6 LINE L1 5046 6154 0 5458 272 92 23 chrY 17308168 17309384 -7403695 - L1PA15-16 LINE L1 -2056 4793 3663 375 60 0 0 chrY 17309384 17309434 -7403645 + (TTG)n Simple_repeat Simple_repeat 2 51 0 5458 272 92 23 chrY 17309434 17311163 -7401916 - L1PA15-16 LINE L1 -3186 3663 1662 608 98 0 0 chrY 17311163 17311255 -7401824 + L1PA7 LINE L1 6063 6154 0 3495 108 28 9 chrY 17311260 17311799 -7401280 + HERVFH19I LTR ERV1 1414 1962 -3624 27 0 0 0 chrY 17312220 17312247 -7400832 + AT_rich Low_complexity Low_complexity 1 27 0 2188 138 0 0 chrY 17313744 17314056 -7399023 + AluSx SINE Alu 1 312 0 6074 224 73 42 chrY 17314278 17314667 -7398412 + HERVFH19I LTR ERV1 4361 4737 -2681 2127 102 10 26 chrY 17314667 17314980 -7398099 - AluY SINE Alu -3 308 1 6074 224 73 42 chrY 17314980 17316408 -7396671 + HERVFH19I LTR ERV1 4737 6233 -1185 21 0 0 0 chrY 17316408 17316429 -7396650 + AT_rich Low_complexity Low_complexity 1 21 0 31574 85 14 3 chrY 17316545 17322613 -7390466 - L1PA5 LINE L1 0 6154 13 1603 80 4 0 chrY 17322623 17322860 -7390219 + HERVFH19I LTR ERV1 4263 4500 -1086 613 185 31 62 chrY 17322846 17323008 -7390071 + HERVFH19I LTR ERV1 4709 4865 -721 * 844 175 6 6 chrY 17323004 17323164 -7389915 + HERVFH19I LTR ERV1 7558 7717 -2 3515 120 41 0 chrY 17323171 17323728 -7389351 + LTR19B LTR ERV1 1 580 0 2341 246 39 65 chrY 17323948 17324904 -7388175 + LTR49-int LTR ERV1 359 1289 -5042 2435 260 51 33 chrY 17325156 17326090 -7386989 + LTR49-int LTR ERV1 1372 2322 -4009 271 114 14 143 chrY 17326164 17326234 -7386845 + MADE1 DNA Mariner 20 80 0 262 233 11 0 chrY 17326474 17326564 -7386515 + LTR49-int LTR ERV1 1722 1812 -4786 3662 150 19 39 chrY 17326588 17327330 -7385749 - L1MA1 LINE L1 0 6302 5576 751 219 15 5 chrY 17327330 17327531 -7385548 - L1MA1 LINE L1 -1293 4853 4651 * 2184 182 53 16 chrY 17327519 17328367 -7384712 - L1M1 LINE L1 -728 6996 6115 11261 41 6 0 chrY 17328379 17329831 -7383248 - L1PA3 LINE L1 -1163 4983 3523 7412 35 6 2 chrY 17329831 17330994 -7382085 + L1PA3 LINE L1 4990 6155 0 6659 229 70 10 chrY 17330997 17333126 -7379953 - L1M1 LINE L1 -1462 6103 3846 11099 229 72 7 chrY 17333140 17335897 -7377182 - L1M1 LINE L1 -4618 2947 13 1709 249 51 77 chrY 17335917 17336904 -7376175 + LTR49-int LTR ERV1 2707 2936 -1944 11188 217 38 19 chrY 17336904 17340703 -7372376 - L1PB1 LINE L1 0 6867 2938 2074 135 0 13 chrY 17340703 17341014 -7372065 - AluY SINE Alu -3 308 2 11188 217 38 19 chrY 17341014 17342664 -7370415 - L1PB1 LINE L1 -3929 2938 1321 288 0 0 0 chrY 17342666 17342698 -7370381 + (T)n Simple_repeat Simple_repeat 1 32 0 3267 235 117 14 chrY 17342698 17343745 -7369334 - L1PB1 LINE L1 -5704 1159 6 26 23 0 23 chrY 17343770 17343792 -7369287 + AT_rich Low_complexity Low_complexity 1 22 -21 1963 92 50 0 chrY 17343792 17344053 -7369026 - AluY SINE Alu -16 295 22 26 23 0 23 chrY 17344053 17344074 -7369005 + AT_rich Low_complexity Low_complexity 22 43 0 1373 232 100 39 chrY 17344112 17344801 -7368278 + LTR49-int LTR ERV1 3703 4433 -1898 1340 229 92 14 chrY 17344803 17345218 -7367861 + LTR2 LTR ERV1 3 449 0 2104 172 3 15 chrY 17345218 17345608 -7367471 + Harlequin LTR ERV1 1 385 -6511 267 297 109 7 chrY 17345679 17345817 -7367262 + Harlequin LTR ERV1 337 488 -6161 38954 174 14 19 chrY 17345855 17353197 -7359882 + Harlequin LTR ERV1 512 7811 -2 1463 242 79 7 chrY 17353199 17353616 -7359463 + LTR2 LTR ERV1 3 449 0 1651 241 58 40 chrY 17353616 17354388 -7358691 + LTR49-int LTR ERV1 4430 5215 -1116 646 258 77 65 chrY 17354407 17354648 -7358431 + LTR49-int LTR ERV1 5790 6027 -304 1487 176 78 4 chrY 17354648 17354904 -7358175 + AluSg SINE Alu 1 275 -35 646 258 77 65 chrY 17354904 17355182 -7357897 + LTR49-int LTR ERV1 6027 6315 -16 977 195 107 102 chrY 17355205 17355635 -7357444 + LTR49 LTR ERV1 1 432 -163 4423 236 31 45 chrY 17355721 17355876 -7357203 + L1PBa LINE L1 3 159 -6704 2898 13 0 0 chrY 17355876 17356193 -7356886 + AluYb8 SINE Alu 1 317 -1 4423 236 31 45 chrY 17356193 17359386 -7353693 + L1PBa LINE L1 159 2358 -4505 2976 143 2 2 chrY 17359418 17359872 -7353207 + LTR22A LTR ERVK 5 458 0 341 203 16 0 chrY 17359872 17359936 -7353143 + HERVK22 LTR ERVK 1 65 -6772 1355 96 0 6 chrY 17359939 17360116 -7352963 + AluSc SINE Alu 1 176 -133 370 77 0 0 chrY 17360116 17360168 -7352911 + AluSp/q SINE Alu 247 298 -5 24086 143 14 3 chrY 17360183 17365534 -7347545 + HERVK22 LTR ERVK 91 5545 -1292 1039 214 9 18 chrY 17365534 17365754 -7347325 - AluJo SINE Alu -56 256 39 521 266 0 0 chrY 17365754 17365867 -7347212 + AluJb SINE Alu 98 210 -102 2855 148 11 13 chrY 17365897 17366358 -7346721 + LTR46 LTR ERV1 1 460 0 2947 139 73 0 chrY 17366358 17366863 -7346216 + LTR46-int LTR ERV1 1 542 -6443 1071 160 6 18 chrY 17366965 17367134 -7345945 + AluSc SINE Alu 111 277 -32 982 38 22 49 chrY 17367137 17367322 -7345757 + (TAAAA)n Simple_repeat Simple_repeat 1 180 0 1115 147 8 50 chrY 17367490 17367728 -7345351 + LTR46-int LTR ERV1 658 885 -6100 * 13459 162 25 13 chrY 17367723 17369164 -7343915 + LTR46-int LTR ERV1 991 2413 -4572 1853 152 7 7 chrY 17369164 17369460 -7343619 + AluSg SINE Alu 3 298 -12 13459 162 25 13 chrY 17369460 17370915 -7342164 + LTR46-int LTR ERV1 2413 3907 -3078 1162 189 57 0 chrY 17370904 17371148 -7341931 + LTR46-int LTR ERV1 6728 6985 0 * 342 132 0 0 chrY 17371148 17371201 -7341878 + LTR46 LTR ERV1 1 53 -407 3009 136 2 13 chrY 17371207 17371672 -7341407 + LTR46 LTR ERV1 1 460 0 522 286 8 0 chrY 17371674 17371807 -7341272 + AluJb SINE Alu 169 302 -10 934 238 127 51 chrY 17371820 17372253 -7340826 + L1MA8 LINE L1 5819 6284 -7 363 305 75 46 chrY 17372355 17372529 -7340550 - L1M3a LINE L1 -5774 181 3 915 274 25 6 chrY 17372544 17372861 -7340218 - L1M4c LINE L1 -4739 1645 1323 542 342 50 8 chrY 17372861 17373101 -7339978 - AluJo SINE Alu -21 291 42 463 258 81 78 chrY 17373165 17373382 -7339697 - L1M3c LINE L1 -4605 1536 1321 1760 166 11 3 chrY 17373382 17373666 -7339413 - AluSg SINE Alu -24 286 1 463 258 81 78 chrY 17373666 17374065 -7339014 - L1M3c LINE L1 -4820 1321 918 21 0 0 0 chrY 17374342 17374363 -7338716 + AT_rich Low_complexity Low_complexity 1 21 0 649 275 107 8 chrY 17374388 17374734 -7338345 + L1M1 LINE L1 2604 3301 -4265 577 254 58 65 chrY 17374927 17375548 -7337531 + L1M1 LINE L1 3314 3930 -3635 855 303 22 46 chrY 17375551 17375963 -7337116 + L1PA6 LINE L1 189 590 -6259 32965 122 22 7 chrY 17376211 17382256 -7330823 + L1PA6 LINE L1 714 6846 -11 278 277 23 8 chrY 17382264 17382394 -7330685 + L1 LINE L1 3653 3784 -3781 418 250 29 52 chrY 17382405 17382541 -7330538 + FLAM_C SINE Alu 1 133 -10 1331 167 91 1 chrY 17382571 17382874 -7330205 + L1PA16 LINE L1 5594 5924 -242 7113 225 27 44 chrY 17382888 17383523 -7329556 + MER66B-int LTR ERV1 2470 3114 -3562 1953 151 27 0 chrY 17383523 17383821 -7329258 - AluSg SINE Alu -3 307 2 7113 225 27 44 chrY 17383821 17385017 -7328062 + MER66B-int LTR ERV1 3114 4270 -2406 10637 197 19 18 chrY 17385105 17385572 -7327507 + MER66B-int LTR ERV1 4604 5069 -1607 3029 139 26 12 chrY 17385572 17386076 -7327003 - MER9 LTR ERVK 0 511 1 10637 197 19 18 chrY 17386076 17387679 -7325400 + MER66B-int LTR ERV1 5069 6676 0 2273 235 13 6 chrY 17387679 17388156 -7324923 + MER66B LTR ERV1 1 480 -6 486 251 97 14 chrY 17388175 17388765 -7324314 - L1M2 LINE L1 -2840 4008 3258 2307 257 83 46 chrY 17388776 17389289 -7323790 - L1M2 LINE L1 -3766 3082 2590 1535 181 3 62 chrY 17389289 17389598 -7323481 - AluSx SINE Alu -10 302 12 2307 257 83 46 chrY 17389598 17390354 -7322725 - L1M2 LINE L1 -4258 2590 1759 2965 234 55 14 chrY 17390372 17391174 -7321905 - L1PB4 LINE L1 -5 6151 5317 * 6233 82 2 0 chrY 17391169 17392002 -7321077 - L1PA6 LINE L1 -3 6151 5317 4796 7 0 2 chrY 17391997 17392542 -7320537 - L1HS LINE L1 0 6155 5612 * 32192 122 40 12 chrY 17392544 17397721 -7315358 - L1PA6 LINE L1 -814 5332 11 1102 251 66 19 chrY 17397765 17398192 -7314887 - L1PA15-16 LINE L1 -4717 1486 1040 751 330 54 18 chrY 17398273 17398718 -7314361 - L1PA15-16 LINE L1 -5271 932 571 490 356 44 54 chrY 17399052 17399367 -7313712 - L1M2 LINE L1 -5781 1068 757 302 301 21 21 chrY 17400168 17400261 -7312818 - L1M2 LINE L1 -6354 495 403 851 319 30 3 chrY 17400286 17400584 -7312495 - L1M2 LINE L1 -6534 315 10 3640 289 39 5 chrY 17400604 17401536 -7311543 - L1M2 LINE L1 -5105 1744 782 772 277 33 23 chrY 17401759 17402062 -7311017 - MER51B-int LTR ERV1 -3860 1011 706 235 102 20 20 chrY 17402960 17403009 -7310070 - LTR64 LTR ERVK -28 530 482 11774 202 32 33 chrY 17403016 17403763 -7309316 + L1MA2 LINE L1 985 1732 -5991 186 43 0 0 chrY 17403763 17403786 -7309293 + (CA)n Simple_repeat Simple_repeat 2 24 0 11774 202 32 33 chrY 17403786 17403855 -7309224 + L1MA2 LINE L1 1732 1800 -5923 255 31 0 0 chrY 17403855 17403887 -7309192 + (CA)n Simple_repeat Simple_repeat 2 33 0 11774 202 32 33 chrY 17403887 17404151 -7308928 + L1MA2 LINE L1 1800 2063 -5660 2082 134 0 16 chrY 17404151 17404464 -7308615 + AluSq SINE Alu 1 308 -5 11774 202 32 33 chrY 17404464 17404952 -7308127 + L1MA2 LINE L1 2063 2550 -5173 1791 165 0 10 chrY 17404952 17405243 -7307836 + AluSx SINE Alu 11 298 -14 11774 202 32 33 chrY 17405243 17409291 -7303788 + L1MA2 LINE L1 2550 6592 -1131 700 98 0 0 chrY 17409291 17409393 -7303686 + L1PA5 LINE L1 6051 6152 -2 11774 202 32 33 chrY 17409393 17410523 -7302556 + L1MA2 LINE L1 6592 7723 0 1037 263 63 18 chrY 17410538 17410995 -7302084 + L1M4 LINE L1 4600 5077 -1069 * 9951 143 15 21 chrY 17410983 17412752 -7300327 + L1PA8 LINE L1 2882 4639 -1507 186 192 0 0 chrY 17412757 17412809 -7300270 + (TTAAA)n Simple_repeat Simple_repeat 4 55 0 5714 119 30 1 chrY 17412841 17414378 -7298701 + L1PA8 LINE L1 4615 6172 0 35 54 0 0 chrY 17414380 17414436 -7298643 + AT_rich Low_complexity Low_complexity 1 56 0 2123 169 4 12 chrY 17414857 17415414 -7297665 - MER51B-int LTR ERV1 -1674 5863 5247 309 171 44 0 chrY 17415411 17415486 -7297593 - MER51B-int LTR ERV1 -2043 5375 4947 * 1803 280 101 14 chrY 17415507 17416267 -7296812 + L1PBa LINE L1 6 831 -6032 8104 199 27 16 chrY 17416282 17417649 -7295430 + L1PBa LINE L1 1388 2739 -4123 226 48 0 48 chrY 17417649 17417691 -7295388 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 8104 199 27 16 chrY 17417691 17420623 -7292456 + L1PBa LINE L1 2739 5729 -1133 1687 159 40 65 chrY 17420640 17420858 -7292221 - MER51B-int LTR ERV1 -2767 3179 2972 2379 102 0 10 chrY 17420858 17421172 -7291907 - AluY SINE Alu 0 311 1 1687 159 40 65 chrY 17421172 17421324 -7291755 - MER51B-int LTR ERV1 -2974 2972 2818 1803 151 74 0 chrY 17421327 17421678 -7291401 - MER51B-int LTR ERV1 -4501 3315 2939 10886 98 3 1 chrY 17421678 17423229 -7289850 + L1PA6 LINE L1 2743 4296 -1850 6584 78 14 1 chrY 17423229 17424743 -7288336 + L1PA6 LINE L1 4629 6150 -4 6238 120 50 10 chrY 17424760 17424931 -7288148 - MER51B-int LTR ERV1 -4867 2949 2786 189 0 0 0 chrY 17424931 17424952 -7288127 + (TA)n Simple_repeat Simple_repeat 1 21 0 6238 120 50 10 chrY 17424952 17425890 -7287189 - MER51B-int LTR ERV1 -5030 2786 1795 456 151 34 101 chrY 17425895 17426014 -7287065 - MER4A LTR ERV1 -147 517 407 2114 130 38 3 chrY 17426016 17426385 -7286694 - MER51B-int LTR ERV1 -6342 1474 1093 2078 123 9 37 chrY 17426391 17426741 -7286338 - MER51B-int LTR ERV1 -7476 340 1 2368 123 49 22 chrY 17426741 17427108 -7285971 - MER51B LTR ERV1 0 377 1 375 219 55 0 chrY 17427312 17427385 -7285694 + AluJ/FLAM SINE Alu 1 77 -225 623 103 0 0 chrY 17427481 17427568 -7285511 - AluY SINE Alu -11 300 214 2224 100 31 3 chrY 17427724 17428044 -7285035 + L1PA7 LINE L1 5825 6153 -1 227 191 0 0 chrY 17428191 17428233 -7284846 + A-rich Low_complexity Low_complexity 2 43 0 776 230 11 16 chrY 17428419 17428610 -7284469 - MER20 DNA MER1_type -29 190 1 2137 110 10 3 chrY 17429853 17430144 -7282935 - AluSp SINE Alu -18 295 3 1497 214 3 7 chrY 17430146 17430445 -7282634 - MLT1B LTR MaLR -92 298 1 1260 254 7 0 chrY 17430585 17430869 -7282210 - AluJb SINE Alu -26 286 1 1429 202 7 7 chrY 17432814 17433086 -7279993 - AluSq SINE Alu -41 272 1 2108 121 0 0 chrY 17433091 17433459 -7279620 - AluSx SINE Alu 0 368 1 252 0 0 0 chrY 17433949 17433977 -7279102 + (A)n Simple_repeat Simple_repeat 1 28 0 805 264 14 27 chrY 17434188 17434408 -7278671 + MER58A DNA MER1_type 7 223 -1 655 244 81 14 chrY 17435386 17435669 -7277410 + MER33 DNA MER1_type 23 324 0 780 189 0 0 chrY 17435883 17436015 -7277064 + AluJo SINE Alu 2 133 -179 316 173 18 45 chrY 17436017 17436127 -7276952 + GA-rich Low_complexity Low_complexity 2 108 0 956 165 0 25 chrY 17436130 17436288 -7276791 + AluJo SINE Alu 136 289 -23 1995 268 57 2 chrY 17436545 17437072 -7276007 - MER68 LTR ERV1 -6 556 1 385 233 37 30 chrY 17437979 17438067 -7275012 + AluJ/FRAM SINE Alu 216 277 -25 1020 163 80 6 chrY 17438117 17438421 -7274658 - MSTA LTR MaLR 0 428 1 338 281 72 62 chrY 17438436 17438728 -7274351 + L1MEc LINE L1 1213 1507 -4889 2157 124 0 16 chrY 17439514 17439828 -7273251 - AluY SINE Alu -2 309 1 228 255 0 0 chrY 17440802 17440853 -7272226 + MER94 DNA DNA 2 52 -82 2048 142 3 3 chrY 17441463 17441773 -7271306 + AluSp SINE Alu 1 310 -3 505 185 74 89 chrY 17441782 17441917 -7271162 + FLAM_C SINE Alu 1 133 0 1064 218 50 40 chrY 17441926 17442224 -7270855 + AluJo SINE Alu 2 302 0 1846 151 32 0 chrY 17443290 17443568 -7269511 + AluSp SINE Alu 3 289 -24 255 103 0 0 chrY 17443592 17443631 -7269448 + (TG)n Simple_repeat Simple_repeat 2 40 0 243 0 0 0 chrY 17443647 17443674 -7269405 + (GA)n Simple_repeat Simple_repeat 2 28 0 487 254 9 0 chrY 17443679 17443793 -7269286 - AluJb SINE Alu -196 116 2 1889 155 7 3 chrY 17443909 17444193 -7268886 + AluSc SINE Alu 1 285 -24 332 118 20 0 chrY 17444595 17444646 -7268433 - MER4A LTR ERV1 -350 314 263 614 152 0 10 chrY 17444646 17444745 -7268334 - MER4A LTR ERV1 -566 98 1 871 238 11 5 chrY 17445169 17445358 -7267721 + MER1B DNA MER1_type 37 226 -71 * 1428 134 75 55 chrY 17445350 17445654 -7267425 - HSMAR2 DNA Mariner -308 994 685 481 189 104 9 chrY 17445654 17445760 -7267319 + MER50 LTR ERV1 1 116 -618 * 2107 211 2 18 chrY 17445752 17446188 -7266891 + MER50 LTR ERV1 283 711 -23 950 230 18 26 chrY 17448394 17448620 -7264459 - MER58A DNA MER1_type 0 224 1 543 161 11 0 chrY 17449577 17449670 -7263409 - L1MB5 LINE L1 -8 6166 6073 894 116 8 0 chrY 17449706 17449827 -7263252 - AluJb SINE Alu -188 124 3 2301 203 92 31 chrY 17449834 17450177 -7262902 - L1MB5 LINE L1 -117 6057 5663 1659 196 3 0 chrY 17450177 17450468 -7262611 + AluJo SINE Alu 1 292 -20 2301 203 92 31 chrY 17450468 17450700 -7262379 - L1MB5 LINE L1 -511 5663 5447 1923 156 40 8 chrY 17450800 17451153 -7261926 + MLT1A1 LTR MaLR 2 365 0 587 164 18 9 chrY 17451753 17451863 -7261216 + L1MB7 LINE L1 5816 5926 -258 653 224 6 41 chrY 17451864 17452034 -7261045 + L1MB7 LINE L1 6006 6169 -15 3152 164 11 15 chrY 17452295 17452824 -7260255 + MER1A DNA MER1_type 1 527 0 1288 211 13 47 chrY 17452850 17453148 -7259931 - AluJo SINE Alu -18 294 7 1022 204 144 8 chrY 17453196 17453460 -7259619 + MLT1D LTR MaLR 1 300 -205 488 212 178 0 chrY 17453462 17453580 -7259499 + AluJb SINE Alu 135 273 -39 391 103 0 0 chrY 17453589 17453647 -7259432 - Alu SINE Alu 0 302 245 240 204 97 1 chrY 17453764 17454020 -7259059 + AluJo SINE Alu 6 310 0 330 181 111 14 chrY 17454025 17454097 -7258982 - MER58 DNA MER1_type -127 88 10 1824 147 13 7 chrY 17454200 17454499 -7258580 + AluSx SINE Alu 9 309 -3 1088 174 33 5 chrY 17455081 17455265 -7257814 - LTR8 LTR ERV1 0 691 503 3794 125 36 27 chrY 17455528 17456166 -7256913 - LTR9B LTR ERV1 0 644 1 1812 142 3 3 chrY 17456464 17456778 -7256301 + AluSg SINE Alu 1 310 0 592 202 6 40 chrY 17456787 17456960 -7256119 + AluJb SINE Alu 144 310 -2 778 171 0 65 chrY 17456992 17457162 -7255917 + L1MA10 LINE L1 6167 6325 -9 319 234 37 28 chrY 17457184 17457291 -7255788 - L1MB7 LINE L1 -24 6160 6053 284 250 0 11 chrY 17457294 17457382 -7255697 - L1MB7 LINE L1 -18 6166 6080 199 221 8 168 chrY 17458820 17458951 -7254128 - L2 LINE L2 -22 3291 3182 1602 151 34 24 chrY 17459123 17459415 -7253664 - AluSc SINE Alu -10 299 5 2057 150 7 0 chrY 17460403 17460709 -7252370 - AluSp SINE Alu -5 308 1 1621 181 105 27 chrY 17461827 17462236 -7250843 - MER67A LTR ERV1 -102 441 1 313 273 33 43 chrY 17463339 17463480 -7249599 + MIR SINE MIR 13 151 -69 1990 131 17 0 chrY 17464253 17464543 -7248536 - AluSg SINE Alu -15 295 1 22 35 0 0 chrY 17466473 17466502 -7246577 + AT_rich Low_complexity Low_complexity 1 29 0 1266 181 97 35 chrY 17466502 17466812 -7246267 - L1PB2 LINE L1 -9 6142 5814 261 289 0 11 chrY 17470666 17470756 -7242323 + T-rich Low_complexity Low_complexity 2 90 0 463 256 28 43 chrY 17471786 17471997 -7241082 + L1MC5 LINE L1 7705 7912 -49 3340 210 84 45 chrY 17472302 17473714 -7239365 - L1MB2 LINE L1 -2 5993 4528 240 35 0 0 chrY 17473714 17473743 -7239336 + (CCTG)n Simple_repeat Simple_repeat 2 30 0 1411 207 0 25 chrY 17473743 17474023 -7239056 - AluJb SINE Alu -39 273 1 387 195 135 35 chrY 17474028 17474228 -7238851 - L1MB2 LINE L1 -2912 3058 2839 1769 220 177 72 chrY 17474229 17475086 -7237993 - L1MB2 LINE L1 -3750 2220 1454 4386 155 51 28 chrY 17475086 17475847 -7237232 + MER4E LTR ERV1 1 779 0 1769 220 177 72 chrY 17475847 17476086 -7236993 - L1MB2 LINE L1 -4516 1454 1242 2038 89 89 4 chrY 17476086 17476366 -7236713 - AluY SINE Alu -5 306 3 1769 220 177 72 chrY 17476366 17476846 -7236233 - L1MB2 LINE L1 -4728 1242 494 387 271 0 21 chrY 17476859 17476955 -7236124 - L1M3d LINE L1 -5117 774 681 1666 174 16 7 chrY 17477092 17477396 -7235683 - AluSx SINE Alu -1 311 5 404 306 34 83 chrY 17477434 17477842 -7235237 - L1MB2 LINE L1 -5499 392 5 384 283 108 54 chrY 17478061 17478375 -7234704 - L1MEd LINE L1 -4869 1250 920 183 80 0 0 chrY 17478435 17478460 -7234619 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1695 157 53 0 chrY 17478610 17478891 -7234188 - AluSx SINE Alu -16 296 1 643 241 104 55 chrY 17483206 17483580 -7229499 - MLT1E2 LTR MaLR -160 466 23 1311 189 25 66 chrY 17483720 17484006 -7229073 + AluJo SINE Alu 9 282 -30 1597 159 59 24 chrY 17484389 17484679 -7228400 - AluSx SINE Alu -12 300 1 582 207 172 10 chrY 17486036 17486248 -7226831 - MLT1C LTR MaLR 0 467 198 640 278 28 48 chrY 17486251 17486499 -7226580 - Charlie1a DNA MER1_type -1175 280 38 306 304 9 18 chrY 17486751 17486863 -7226216 + L1ME2 LINE L1 5789 5899 -263 487 270 123 34 chrY 17486867 17487160 -7225919 + L1ME3 LINE L1 5843 6161 -1 285 186 137 69 chrY 17487220 17487322 -7225757 + L1ME2 LINE L1 5990 6098 -66 4733 195 47 39 chrY 17487831 17489676 -7223403 - L1MA8 LINE L1 -2 6289 4460 2104 142 7 0 chrY 17489676 17489979 -7223100 - AluSx SINE Alu -7 305 1 4733 195 47 39 chrY 17489979 17489991 -7223088 - L1MA8 LINE L1 -1831 4460 4450 2032 133 10 3 chrY 17489991 17490291 -7222788 - AluY SINE Alu -9 302 1 4733 195 47 39 chrY 17490291 17490429 -7222650 - L1MA8 LINE L1 -1841 4450 4315 1480 178 35 24 chrY 17490429 17490716 -7222363 - AluSx SINE Alu -1 311 22 1277 199 28 98 chrY 17490716 17490890 -7222189 - AluJb SINE Alu -7 295 151 2066 141 0 3 chrY 17490890 17491194 -7221885 - AluSg SINE Alu -7 303 1 1277 199 28 98 chrY 17491194 17491336 -7221743 - AluJb SINE Alu -151 151 1 4733 195 47 39 chrY 17491336 17491476 -7221603 - L1MA8 LINE L1 -1975 4316 4142 496 234 143 45 chrY 17491484 17491862 -7221217 - LTR15 LTR ERV1 -11 530 177 233 250 15 0 chrY 17491912 17491980 -7221099 + (TTA)n Simple_repeat Simple_repeat 2 70 0 567 294 24 14 chrY 17491999 17492210 -7220869 - HERV15 LTR ERV1 -2 8733 8521 20779 273 31 30 chrY 17492234 17494206 -7218873 - HERV15 LTR ERV1 -2125 6301 4334 243 79 0 0 chrY 17494206 17494244 -7218835 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 10022 63 4 2 chrY 17494254 17496294 -7216785 - L1PA5 LINE L1 -1 6153 4142 20779 273 31 30 chrY 17496294 17500220 -7212859 - HERV15 LTR ERV1 -4100 4326 383 1072 262 46 31 chrY 17500373 17500724 -7212355 - HERV15 LTR ERV1 -8052 374 19 1323 241 78 81 chrY 17500853 17501806 -7211273 - L1MDa LINE L1 -3040 3500 2550 2162 108 0 46 chrY 17501806 17502129 -7210950 - AluY SINE Alu -3 308 1 1323 241 78 81 chrY 17502129 17502532 -7210547 - L1MDa LINE L1 -3990 2550 2147 1232 287 121 8 chrY 17502524 17503029 -7210050 - L1MDa LINE L1 -5201 1339 778 * 246 313 0 0 chrY 17503009 17503076 -7210003 - L1MDa LINE L1 -5970 570 504 * 2764 204 24 4 chrY 17503084 17503583 -7209496 + LTR22 LTR ERVK 1 509 0 1854 128 25 3 chrY 17503583 17503865 -7209214 + HERVK22 LTR ERVK 1 288 -6549 19388 108 14 4 chrY 17503869 17507600 -7205479 + HERVK22 LTR ERVK 3003 6837 0 2331 194 62 42 chrY 17507600 17507766 -7205313 + LTR22 LTR ERVK 1 162 -347 1597 153 16 0 chrY 17507766 17508014 -7205065 + AluSc SINE Alu 42 293 -16 2331 194 62 42 chrY 17508014 17508346 -7204733 + LTR22 LTR ERVK 162 509 0 529 287 132 8 chrY 17508351 17508430 -7204649 - L1MDa LINE L1 -6044 496 428 180 77 0 0 chrY 17508430 17508456 -7204623 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 529 287 132 8 chrY 17508456 17508627 -7204452 - L1MDa LINE L1 -6112 428 215 1508 185 40 33 chrY 17508659 17508962 -7204117 + AluSx SINE Alu 5 309 -3 237 139 0 0 chrY 17509302 17509345 -7203734 + (TG)n Simple_repeat Simple_repeat 2 44 0 1063 244 61 58 chrY 17509456 17509800 -7203279 + MSTD LTR MaLR 1 348 -48 2473 55 7 3 chrY 17509800 17510107 -7202972 + AluY SINE Alu 1 308 -3 1063 244 61 58 chrY 17510107 17510156 -7202923 + MSTD LTR MaLR 348 395 -1 8003 28 8 0 chrY 17511301 17512609 -7200470 + L1PA3 LINE L1 4836 6150 -5 33 0 0 0 chrY 17512609 17512642 -7200437 + AT_rich Low_complexity Low_complexity 1 33 0 41 72 0 0 chrY 17512825 17512908 -7200171 + AT_rich Low_complexity Low_complexity 1 83 0 21 0 0 0 chrY 17513665 17513686 -7199393 + AT_rich Low_complexity Low_complexity 1 21 0 216 0 0 0 chrY 17513914 17513938 -7199141 + (A)n Simple_repeat Simple_repeat 1 24 0 26 64 0 0 chrY 17514019 17514066 -7199013 + AT_rich Low_complexity Low_complexity 1 47 0 23 33 0 0 chrY 17514549 17514579 -7198500 + AT_rich Low_complexity Low_complexity 1 30 0 262 326 28 46 chrY 17514726 17514944 -7198135 + L1PA12 LINE L1 7 220 -7361 522 268 137 53 chrY 17515163 17515521 -7197558 + MER50 LTR ERV1 3 390 -344 230 252 17 126 chrY 17515695 17515814 -7197265 + MER50 LTR ERV1 606 711 -23 1135 200 83 66 chrY 17517242 17517325 -7195754 + L1PA12 LINE L1 2319 2399 -5175 432 51 0 0 chrY 17517325 17517384 -7195695 + (CATA)n Simple_repeat Simple_repeat 2 60 0 1135 200 83 66 chrY 17517384 17517650 -7195429 + L1PA12 LINE L1 2399 2674 -4900 * 4941 251 31 20 chrY 17517620 17519208 -7193871 + L1P LINE L1 4156 5761 -1823 3982 198 67 25 chrY 17519225 17520151 -7192928 + L1P LINE L1 13 977 -5169 9385 178 12 21 chrY 17520170 17522049 -7191030 + L1PA15 LINE L1 11 1871 -4275 7007 59 2 0 chrY 17522071 17523347 -7189732 - L1PA4 LINE L1 -3 6152 4879 4261 78 21 0 chrY 17523347 17523971 -7189108 - L1PA4 LINE L1 -4444 1702 1066 * 34455 57 31 2 chrY 17523966 17528701 -7184378 - L1P LINE L1 -1269 4877 4 3775 170 63 56 chrY 17528701 17528837 -7184242 + L1PA15 LINE L1 4952 5086 -1079 2493 21 3 0 chrY 17528837 17529170 -7183909 + L1PA3 LINE L1 5850 6183 0 3775 170 63 56 chrY 17529170 17529446 -7183633 + L1PA15 LINE L1 5086 5358 -807 2637 30 0 0 chrY 17529446 17529745 -7183334 - AluY SINE Alu -12 299 1 3775 170 63 56 chrY 17529745 17529830 -7183249 + L1PA15 LINE L1 5358 5441 -724 2009 132 10 0 chrY 17529830 17530126 -7182953 - AluSp SINE Alu -14 299 1 3775 170 63 56 chrY 17530126 17530291 -7182788 + L1PA15 LINE L1 5441 5603 -562 2378 79 0 0 chrY 17530291 17530594 -7182485 + AluY SINE Alu 1 303 -8 3775 170 63 56 chrY 17530594 17530663 -7182416 + L1PA15 LINE L1 5603 5670 -495 197 33 33 0 chrY 17530663 17530693 -7182386 + (CA)n Simple_repeat Simple_repeat 2 32 0 3775 170 63 56 chrY 17530693 17530769 -7182310 + L1PA15 LINE L1 5670 5744 -421 2251 100 0 3 chrY 17530769 17531078 -7182001 - AluY SINE Alu -3 308 1 3775 170 63 56 chrY 17531078 17531472 -7181607 + L1PA15 LINE L1 5744 6163 -2 634 197 65 37 chrY 17532767 17532968 -7180111 - L1PB4 LINE L1 -180 5976 5774 542 271 0 0 chrY 17532980 17533120 -7179959 + L1PB4 LINE L1 6017 6156 0 1924 164 7 0 chrY 17533177 17533469 -7179610 + AluSg SINE Alu 1 294 -16 21 0 0 0 chrY 17533488 17533509 -7179570 + AT_rich Low_complexity Low_complexity 1 21 0 4228 203 22 25 chrY 17534112 17535533 -7177546 - L1PA13 LINE L1 -4 6159 4552 2094 125 10 0 chrY 17535533 17535828 -7177251 + AluSg SINE Alu 1 298 -12 4228 203 22 25 chrY 17535828 17536278 -7176801 - L1PA13 LINE L1 -1611 4552 4102 510 250 21 27 chrY 17536279 17536467 -7176612 - L1 LINE L1 -2545 3601 3415 1673 143 3 23 chrY 17536469 17536776 -7176303 + L1PB1 LINE L1 5491 5791 -360 366 147 0 0 chrY 17536776 17536844 -7176235 + (TA)n Simple_repeat Simple_repeat 1 68 0 1697 180 34 11 chrY 17536855 17537210 -7175869 + L1PB1 LINE L1 5789 6151 0 2620 219 57 48 chrY 17537314 17537450 -7175629 + L1MA7 LINE L1 5354 5487 -804 1743 180 7 0 chrY 17537450 17537728 -7175351 + AluSx SINE Alu 1 280 -32 207 0 0 0 chrY 17537732 17537755 -7175324 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2620 219 57 48 chrY 17537755 17538533 -7174546 + L1MA7 LINE L1 5489 6281 -10 25 51 0 0 chrY 17538535 17538574 -7174505 + AT_rich Low_complexity Low_complexity 1 39 0 2154 196 16 4 chrY 17538969 17539422 -7173657 - L1MA4A LINE L1 -5 7000 6543 7753 258 40 22 chrY 17539423 17542646 -7170433 - L1MA4A LINE L1 -554 6451 3138 318 50 0 0 chrY 17542646 17542686 -7170393 + (TA)n Simple_repeat Simple_repeat 2 41 0 7753 258 40 22 chrY 17542686 17543768 -7169311 - L1MA4A LINE L1 -3867 3138 2077 6598 78 31 0 chrY 17543770 17544803 -7168276 - L1PA7 LINE L1 -1 6153 5108 26902 149 27 19 chrY 17545395 17548175 -7164904 - L1PA7 LINE L1 -1011 5135 2294 219 88 0 0 chrY 17548175 17548209 -7164870 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 26902 149 27 19 chrY 17548209 17550511 -7162568 - L1PA7 LINE L1 -3852 2294 12 1771 278 178 58 chrY 17550516 17550740 -7162339 - L1MA4A LINE L1 -4782 2067 1871 2655 64 3 0 chrY 17550740 17551082 -7161997 - L1PA4 LINE L1 -6 6149 5807 1771 278 178 58 chrY 17551082 17552068 -7161011 - L1MA4A LINE L1 -4978 1871 711 748 343 95 5 chrY 17552207 17552595 -7160484 - L1MA4A LINE L1 -6373 476 54 1822 228 81 12 chrY 17552638 17553406 -7159673 - L1 LINE L1 -2243 4107 3287 37027 64 5 48 chrY 17553443 17559871 -7153208 - L1PA4 LINE L1 -8 6147 4 430 283 95 54 chrY 17561066 17561381 -7151698 - L1 LINE L1 -5952 329 2 404 228 55 21 chrY 17562547 17562692 -7150387 + L1 LINE L1 3391 3540 -2606 354 254 51 28 chrY 17562692 17562909 -7150170 + L1 LINE L1 4415 4636 -1510 944 305 36 35 chrY 17564232 17564862 -7148217 + L1 LINE L1 4663 5293 -853 293 250 42 10 chrY 17564938 17565034 -7148045 + L1M LINE L1 5321 5419 -881 198 0 0 0 chrY 17565034 17565056 -7148023 + (A)n Simple_repeat Simple_repeat 1 22 0 26 0 0 0 chrY 17566001 17566027 -7147052 + AT_rich Low_complexity Low_complexity 1 26 0 385 212 175 0 chrY 17566027 17566164 -7146915 - L1MD2 LINE L1 0 6359 6199 340 290 76 15 chrY 17566168 17566299 -7146780 - L1MD2 LINE L1 -216 6143 6005 12315 59 12 1 chrY 17566319 17568690 -7144389 - L1PA4 LINE L1 0 6155 3767 8693 110 8 0 chrY 17568690 17569981 -7143098 - L1PA4 LINE L1 -4843 1303 3 240 59 0 0 chrY 17570129 17570163 -7142916 + (TG)n Simple_repeat Simple_repeat 2 35 0 2116 266 27 30 chrY 17571916 17572659 -7140420 - L1MC1 LINE L1 0 6333 5593 940 235 14 111 chrY 17572771 17573184 -7139895 - MER93b LTR ERV1 0 373 1 29 0 0 0 chrY 17573225 17573254 -7139825 + AT_rich Low_complexity Low_complexity 1 29 0 2312 100 0 0 chrY 17573254 17573555 -7139524 - AluY SINE Alu -10 301 1 22 0 0 0 chrY 17573706 17573728 -7139351 + AT_rich Low_complexity Low_complexity 1 22 0 2719 7 0 0 chrY 17574091 17574387 -7138692 - AluYa5 SINE Alu -15 296 1 1197 185 77 24 chrY 17575346 17575643 -7137436 - THE1C LTR MaLR -5 370 58 5854 86 36 18 chrY 17575661 17576210 -7136869 + L1PA8 LINE L1 5254 5827 -345 2112 117 7 3 chrY 17576210 17576500 -7136579 + AluSp SINE Alu 17 307 -6 5854 86 36 18 chrY 17576500 17576844 -7136235 + L1PA8 LINE L1 5827 6163 -9 675 164 0 9 chrY 17577035 17577151 -7135928 - AluSp/q SINE Alu -10 303 189 713 274 60 28 chrY 17577158 17577476 -7135603 - L1M4 LINE L1 -1782 4364 4037 769 124 130 41 chrY 17577478 17577647 -7135432 - MER4E LTR ERV1 -11 755 572 2826 39 14 0 chrY 17577647 17578007 -7135072 - L1P LINE L1 -1845 4301 3937 7573 29 2 0 chrY 17578007 17579087 -7133992 + L1PA3 LINE L1 5074 6155 0 2949 171 39 22 chrY 17579088 17579677 -7133402 - MER4E LTR ERV1 -180 599 1 6596 174 65 19 chrY 17580554 17580717 -7132362 - MER4E-int LTR ERV1 -113 6645 6491 1693 184 13 3 chrY 17580717 17581026 -7132053 + AluSx SINE Alu 1 312 0 6596 174 65 19 chrY 17581026 17582767 -7130312 - MER4E-int LTR ERV1 -267 6491 4603 2035 166 17 0 chrY 17582767 17583111 -7129968 + THE1A LTR MaLR 3 352 -3 6596 174 65 19 chrY 17583111 17583275 -7129804 - MER4E-int LTR ERV1 -2155 4603 4448 2587 201 37 53 chrY 17583270 17583834 -7129245 - MER4E-int LTR ERV1 -2670 4088 3534 * 1746 195 3 0 chrY 17583834 17584141 -7128938 - AluSc SINE Alu -1 308 1 2587 201 37 53 chrY 17584141 17584222 -7128857 - MER4E-int LTR ERV1 -3224 3534 3453 3874 157 98 42 chrY 17584278 17584985 -7128094 - MER4E-int LTR ERV1 -3758 3000 2205 1922 167 6 10 chrY 17584985 17585297 -7127782 + AluSq SINE Alu 1 311 -2 3874 157 98 42 chrY 17585297 17585720 -7127359 - MER4E-int LTR ERV1 -4553 2205 1807 1691 190 13 3 chrY 17585749 17586059 -7127020 + AluSq SINE Alu 1 313 0 3196 186 22 10 chrY 17586061 17586694 -7126385 + LTR9B LTR ERV1 7 644 0 1502 247 13 42 chrY 17586694 17587144 -7125935 + HUERS-P3b LTR ERV1 2 438 -6980 2943 102 27 18 chrY 17587144 17588844 -7124235 + L1PA6 LINE L1 3152 4984 -1162 2696 78 0 0 chrY 17588843 17589214 -7123865 + L1PA6 LINE L1 5413 5783 -371 * 1461 128 13 0 chrY 17589215 17589442 -7123637 + L1PA6 LINE L1 5907 6136 -18 386 98 98 0 chrY 17589453 17589694 -7123385 + (TA)n Simple_repeat Simple_repeat 1 264 0 260 170 19 0 chrY 17589697 17589750 -7123329 + HUERS-P3b LTR ERV1 451 504 -6914 1487 64 14 0 chrY 17589911 17590131 -7122948 - L1PA4 LINE L1 -2684 3462 3240 9407 60 6 1 chrY 17590132 17591409 -7121670 + L1PA4 LINE L1 3458 4740 -1406 6891 59 9 0 chrY 17591411 17592507 -7120572 + L1PA4 LINE L1 5050 6153 -2 784 250 58 0 chrY 17592523 17592731 -7120348 + HUERS-P3b LTR ERV1 878 1097 -7822 1905 173 3 0 chrY 17592731 17593032 -7120047 - AluSq SINE Alu -11 302 1 595 181 79 0 chrY 17593051 17593178 -7119901 + HUERS-P3b LTR ERV1 2506 2642 -4776 1840 230 30 5 chrY 17593178 17593608 -7119471 - LTR8 LTR ERV1 -250 441 1 10822 143 32 20 chrY 17593608 17597151 -7115928 + HUERS-P3b LTR ERV1 1275 6780 -638 2033 188 10 15 chrY 17597147 17597545 -7115534 + HUERS-P3 LTR ERV1 8503 8898 -21 * 3036 166 20 5 chrY 17597564 17598125 -7114954 + LTR9B LTR ERV1 1 569 -75 253 119 24 0 chrY 17598125 17598167 -7114912 + L1PA7 LINE L1 6046 6088 -66 2281 139 62 23 chrY 17598167 17598600 -7114479 + LTR7 LTR ERV1 1 450 0 1498 212 101 21 chrY 17598600 17599025 -7114054 + HERVH LTR ERV1 1 459 -7254 7118 235 22 36 chrY 17599083 17601748 -7111331 + HERVH LTR ERV1 590 3082 -3537 416 81 16 0 chrY 17601744 17601806 -7111273 + HERVH LTR ERV1 3933 3995 -3718 * 1476 171 6 5 chrY 17601834 17602124 -7110955 + HERVH LTR ERV1 3953 4249 -2749 2000 139 9 0 chrY 17602148 17602486 -7110593 + HERVH LTR ERV1 5522 5862 -1851 * 2725 118 54 0 chrY 17602482 17602890 -7110189 + LTR17 LTR ERV1 351 780 0 2405 132 111 32 chrY 17602891 17603484 -7109595 - MER4-int LTR ERV1 -4195 2403 1764 378 0 0 0 chrY 17603496 17603538 -7109541 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 1693 107 113 6 chrY 17604604 17604956 -7108123 - LTR7 LTR ERV1 0 450 1 2130 145 38 12 chrY 17604956 17605376 -7107703 - HERVH LTR ERV1 0 7713 7283 5694 137 2 1 chrY 17605384 17606314 -7106765 - HERVH LTR ERV1 -2699 5014 4084 1621 141 95 10 chrY 17606327 17606693 -7106386 - LTR7 LTR ERV1 0 450 1 1860 155 8 14 chrY 17606693 17607047 -7106032 + HERVH LTR ERV1 7362 7713 0 1769 141 67 8 chrY 17607047 17607415 -7105664 + LTR7 LTR ERV1 1 450 0 188 233 0 23 chrY 17607693 17607736 -7105343 + MIR SINE MIR 189 230 -32 4596 205 79 18 chrY 17609309 17610435 -7102644 - MER4E-int LTR ERV1 -5563 1195 1 3235 184 35 46 chrY 17610440 17611222 -7101857 - MER4E LTR ERV1 -5 774 2 481 235 82 26 chrY 17611234 17611502 -7101577 - L1M4 LINE L1 -2108 4038 3756 714 232 11 0 chrY 17611554 17611731 -7101348 + MER41C LTR ERV1 376 554 0 4666 173 51 16 chrY 17611892 17612092 -7100987 + MER41C-int LTR ERV1 3 195 -7561 1674 174 4 4 chrY 17612092 17612368 -7100711 + AluSc SINE Alu 1 276 -33 309 68 0 0 chrY 17612370 17612414 -7100665 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 4666 173 51 16 chrY 17612414 17613187 -7099892 + MER41C-int LTR ERV1 195 1013 -6743 9446 165 47 6 chrY 17613188 17614954 -7098125 + MER41C-int LTR ERV1 1118 2956 -4800 1018 185 5 5 chrY 17614940 17615140 -7097939 + MER41C-int LTR ERV1 4244 4443 -3313 * 1039 117 6 0 chrY 17615131 17615293 -7097786 + MER41C-int LTR ERV1 5151 5313 -2443 827 203 5 16 chrY 17615292 17615479 -7097600 + MER41C-int LTR ERV1 5461 5645 -2111 * 2697 183 4 2 chrY 17615468 17615972 -7097107 + MER41C-int LTR ERV1 6084 6588 -1168 17913 49 1 2 chrY 17615987 17619024 -7094055 - L1PA2 LINE L1 0 6155 3121 6973 128 8 33 chrY 17619035 17619626 -7093453 + MER41C-int LTR ERV1 6583 7130 -626 1607 178 17 24 chrY 17619626 17619918 -7093161 - AluSx SINE Alu -22 290 1 6973 128 8 33 chrY 17619918 17620524 -7092555 + MER41C-int LTR ERV1 7130 7750 -6 2484 174 82 12 chrY 17620531 17621044 -7092035 + MER41C LTR ERV1 3 551 -3 507 240 0 0 chrY 17621498 17621594 -7091485 - Alu SINE Alu -15 295 200 9461 69 5 10 chrY 17621596 17627692 -7085387 - L1PA4 LINE L1 0 6155 1 653 264 32 28 chrY 17627708 17627992 -7085087 - L1M4 LINE L1 -4900 1642 1358 859 242 79 0 chrY 17628148 17628388 -7084691 + AluJo SINE Alu 54 312 0 468 279 67 7 chrY 17628539 17628808 -7084271 + L1M4c LINE L1 2151 2435 -3949 937 289 79 24 chrY 17628894 17629513 -7083566 + L1M4c LINE L1 2645 3297 -3085 3860 243 63 23 chrY 17629677 17631160 -7081919 + L1M3f LINE L1 85 1624 -4065 31521 118 25 7 chrY 17631167 17637200 -7075879 + L1PA6 LINE L1 11 6154 0 869 220 61 100 chrY 17637206 17637484 -7075595 + L1M3f LINE L1 1677 1964 -4364 1342 153 61 95 chrY 17637484 17637779 -7075300 + AluSx SINE Alu 1 285 -27 869 220 61 100 chrY 17637779 17637828 -7075251 + L1M3f LINE L1 1964 2013 -4315 1593 220 3 0 chrY 17637828 17638123 -7074956 + AluSx SINE Alu 1 296 -16 869 220 61 100 chrY 17638123 17638333 -7074746 + L1M3f LINE L1 2013 2187 -4141 2308 103 3 3 chrY 17638333 17638644 -7074435 + AluY SINE Alu 1 311 0 869 220 61 100 chrY 17638644 17638772 -7074307 + L1M3f LINE L1 2187 2318 -4010 1531 250 88 24 chrY 17638795 17639468 -7073611 + L1M3f LINE L1 2310 3025 -3303 38380 73 4 0 chrY 17639484 17645616 -7067463 - L1PA4 LINE L1 0 6155 3 297 243 35 22 chrY 17645636 17645800 -7067279 - L1MA8 LINE L1 -82 6209 6044 39315 48 22 2 chrY 17645817 17651847 -7061232 - L1PA2 LINE L1 -2 6153 1 10078 197 39 4 chrY 17651855 17653812 -7059267 - HUERS-P3 LTR ERV1 -5280 3639 1606 396 0 0 0 chrY 17653812 17653856 -7059223 + (TA)n Simple_repeat Simple_repeat 2 45 0 10078 197 39 4 chrY 17653856 17653929 -7059150 - HUERS-P3 LTR ERV1 -7313 1606 1537 1012 191 26 0 chrY 17654017 17654206 -7058873 - HUERS-P3 LTR ERV1 -5702 3217 3024 2854 236 47 20 chrY 17654223 17655357 -7057722 - HUERS-P3 LTR ERV1 -7492 1427 219 531 308 65 44 chrY 17655425 17655582 -7057497 - LTR19C LTR ERV1 -32 747 595 2151 127 0 3 chrY 17655582 17655890 -7057189 - AluY SINE Alu -4 307 1 531 308 65 44 chrY 17655890 17656070 -7057009 - LTR19C LTR ERV1 -184 595 403 280 356 45 15 chrY 17656974 17657106 -7055973 - L2 LINE L2 -191 3081 2946 257 355 32 24 chrY 17657158 17657282 -7055797 - L2 LINE L2 -473 2841 2717 524 314 154 24 chrY 17657293 17657630 -7055449 - L1ME LINE L1 -434 5687 5307 367 332 139 5 chrY 17658226 17658428 -7054651 - L1MC/D LINE L1 -2239 5569 5341 30 0 0 0 chrY 17658896 17658926 -7054153 + AT_rich Low_complexity Low_complexity 1 30 0 594 186 75 43 chrY 17659138 17659299 -7053780 - Tigger7 DNA MER2_type -19 2468 2303 279 152 0 0 chrY 17659643 17659689 -7053390 - MER41B LTR ERV1 0 635 590 1280 190 76 27 chrY 17659689 17659952 -7053127 - AluSx SINE Alu -36 276 1 2385 151 2 2 chrY 17659952 17660363 -7052716 - MER41A LTR ERV1 -93 461 51 7228 12 0 0 chrY 17660375 17661232 -7051847 - L1HS LINE L1 0 6155 5299 329 154 0 0 chrY 17661232 17661297 -7051782 - MER41A LTR ERV1 -489 65 1 3499 180 21 28 chrY 17662269 17663026 -7050053 - MER4E LTR ERV1 -10 769 18 564 238 48 57 chrY 17663057 17663284 -7049795 - MER61E LTR ERV1 -4 565 341 318 260 19 10 chrY 17663454 17663558 -7049521 - LTR25 LTR ERV1 -441 353 249 689 240 10 26 chrY 17664586 17665140 -7047939 + BSR/Beta Satellite Satellite 1 544 -43 334 242 14 135 chrY 17665160 17665375 -7047704 + BSR/Beta Satellite Satellite 69 257 -122 16393 174 22 11 chrY 17665375 17668799 -7044280 + L1PA8 LINE L1 1631 5094 -1052 1859 198 85 15 chrY 17668799 17669259 -7043820 + LTR22B LTR ERVK 1 492 0 31791 156 12 6 chrY 17669261 17676062 -7037017 + HERVK22 LTR ERVK 3 6837 0 2110 186 100 26 chrY 17676062 17676520 -7036559 + LTR22B LTR ERVK 1 492 0 5962 134 12 2 chrY 17676527 17677585 -7035494 + L1PA8 LINE L1 5096 6162 -10 2231 320 7 15 chrY 17677600 17677766 -7035313 - HUERS-P3 LTR ERV1 -613 8306 8140 5305 161 28 17 chrY 17677766 17678724 -7034355 - LTR5 LTR ERVK 0 969 1 2231 320 7 15 chrY 17678724 17679310 -7033769 - HUERS-P3 LTR ERV1 -779 8140 7560 7305 260 39 24 chrY 17679321 17680782 -7032297 - HUERS-P3 LTR ERV1 -1842 7077 5580 1564 230 7 13 chrY 17680782 17681086 -7031993 - AluSx SINE Alu 0 302 1 7305 260 39 24 chrY 17681086 17681556 -7031523 - HUERS-P3 LTR ERV1 -3339 5580 5118 18706 192 54 11 chrY 17681558 17685768 -7027311 - L1PA8 LINE L1 0 6487 1870 189 74 0 0 chrY 17685768 17685795 -7027284 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 18706 192 54 11 chrY 17685795 17687750 -7025329 - L1PA8 LINE L1 -4617 1870 2 4500 283 14 4 chrY 17687750 17688808 -7024271 - HUERS-P3 LTR ERV1 -1976 5115 4047 581 290 42 17 chrY 17688825 17689953 -7023126 + BSR/Beta Satellite Satellite 1 1157 -23 810 288 67 30 chrY 17690165 17691003 -7022076 + BSR/Beta Satellite Satellite 1 869 -30 * 2888 139 20 26 chrY 17690994 17691491 -7021588 + LTR15 LTR ERV1 1 595 0 7000 192 52 26 chrY 17691491 17693124 -7019955 + HERV15 LTR ERV1 1 1398 -7028 2962 253 15 13 chrY 17693105 17694243 -7018836 + HERV15 LTR ERV1 1704 4082 -4344 * 17986 206 8 15 chrY 17694287 17697767 -7015312 + HERV15 LTR ERV1 4520 7973 -762 492 260 8 47 chrY 17697767 17698039 -7015040 + BSR/Beta Satellite Satellite 1 261 -10 4139 171 90 20 chrY 17698057 17698799 -7014280 - LTR25 LTR ERV1 0 794 1 528 251 16 51 chrY 17698837 17699261 -7013818 + BSR/Beta Satellite Satellite 1 409 -7 550 277 26 8 chrY 17699273 17699748 -7013331 + BSR/Beta Satellite Satellite 1 483 -12 263 378 22 11 chrY 17699844 17700017 -7013062 + BSR/Beta Satellite Satellite 1 174 -2 1383 266 42 16 chrY 17700069 17700857 -7012222 + BSR/Beta Satellite Satellite 1 808 -6 1124 256 32 40 chrY 17700869 17702185 -7010894 + BSR/Beta Satellite Satellite 1 1305 -60 542 253 39 27 chrY 17702231 17702657 -7010422 + BSR/Beta Satellite Satellite 1 430 0 1370 278 30 37 chrY 17702715 17704369 -7008710 + BSR/Beta Satellite Satellite 1 1660 -469 195 42 0 0 chrY 17704369 17704393 -7008686 + (TG)n Simple_repeat Simple_repeat 1 24 0 1370 278 30 37 chrY 17704393 17704814 -7008265 + BSR/Beta Satellite Satellite 1660 2083 -46 1130 275 32 21 chrY 17704896 17706270 -7006809 + BSR/Beta Satellite Satellite 1 1388 -42 608 265 16 45 chrY 17706293 17707173 -7005906 + BSR/Beta Satellite Satellite 1 853 -29 671 247 8 17 chrY 17707206 17707535 -7005544 + BSR/Beta Satellite Satellite 1 326 -46 244 237 0 0 chrY 17707537 17707596 -7005483 + T-rich Low_complexity Low_complexity 1 59 0 41855 52 22 1 chrY 17707600 17713621 -6999458 - L1PA2 LINE L1 -3 6152 3 4819 178 95 24 chrY 17713632 17713745 -6999334 - MER52A-int LTR ERV1 -2949 4588 4484 1890 146 0 7 chrY 17713745 17714048 -6999031 - AluSx SINE Alu 0 312 19 4819 178 95 24 chrY 17714048 17715075 -6998004 - MER52A-int LTR ERV1 -3053 4484 3367 313 129 29 114 chrY 17715068 17715138 -6997941 - MER52A-int LTR ERV1 -2937 4059 1238 * 514 231 0 9 chrY 17715137 17715245 -6997834 + MER52-int LTR ERV1 980 1086 -6005 737 219 40 30 chrY 17715293 17715494 -6997585 - LTR4 LTR ERV1 -41 555 353 316 118 82 82 chrY 17715550 17715635 -6997444 - MER52A-int LTR ERV1 -6313 778 694 3834 156 10 2 chrY 17715637 17716214 -6996865 - MER52A-int LTR ERV1 -4812 2279 1698 426 59 0 0 chrY 17716237 17716288 -6996791 - MER52A-int LTR ERV1 -5335 1756 1706 2083 225 47 60 chrY 17716409 17716528 -6996551 - MER52A-int LTR ERV1 -6520 571 452 943 39 16 0 chrY 17716528 17716656 -6996423 + (GGAA)n Simple_repeat Simple_repeat 3 132 0 2083 225 47 60 chrY 17716656 17717106 -6995973 - MER52A-int LTR ERV1 -6639 452 9 5061 251 111 51 chrY 17717106 17718684 -6994395 - MER52A LTR ERV1 0 1755 1 618 261 7 45 chrY 17718684 17719198 -6993881 + BSR/Beta Satellite Satellite 1 494 0 595 250 32 21 chrY 17719226 17720021 -6993058 + BSR/Beta Satellite Satellite 1 804 -34 236 363 29 0 chrY 17720064 17720166 -6992913 + BSR/Beta Satellite Satellite 45 149 -3 1187 240 37 93 chrY 17720320 17720482 -6992597 + BSR/Beta Satellite Satellite 1 171 -1196 2064 153 0 3 chrY 17720482 17720789 -6992290 + AluSq SINE Alu 1 306 -7 1187 240 37 93 chrY 17720789 17721123 -6991956 + BSR/Beta Satellite Satellite 171 522 -845 1729 158 0 88 chrY 17721123 17721464 -6991615 + AluSq SINE Alu 1 311 -2 1187 240 37 93 chrY 17721464 17721568 -6991511 + BSR/Beta Satellite Satellite 522 1177 -190 431 81 0 48 chrY 17721666 17721728 -6991351 - HERVK3 LTR ERVK -2505 4738 4680 2414 109 0 0 chrY 17721731 17722061 -6991018 - HERVK3 LTR ERVK -2949 4294 3965 739 228 7 7 chrY 17722050 17722199 -6990880 - HERVK3 LTR ERVK -3559 3684 3536 * 3919 131 3 0 chrY 17722198 17722771 -6990308 - HERVK3 LTR ERVK -4582 2661 2087 3346 157 26 12 chrY 17722771 17723376 -6989703 - LTR6A LTR ERV1 0 564 1 2961 191 41 0 chrY 17723376 17723941 -6989138 - HERVK3 LTR ERVK -5153 2090 1503 2542 95 127 231 chrY 17723948 17724717 -6988362 - LTR12 LTR ERV1 -25 689 1 5594 111 0 4 chrY 17724717 17725494 -6987585 - HERV9 LTR ERV1 0 8399 7626 2389 191 115 60 chrY 17725492 17726346 -6986733 - Harlequin LTR ERV1 -5156 1740 840 * 5658 132 16 18 chrY 17726339 17727216 -6985863 - Harlequin LTR ERV1 -3445 4954 4080 21016 125 22 8 chrY 17727223 17730421 -6982658 - Harlequin LTR ERV1 -259 455 1 229 263 0 13 chrY 17730421 17730497 -6982582 - LTR30 LTR ERV1 -98 624 550 1510 118 109 0 chrY 17730497 17730735 -6982344 - LTR12 LTR ERV1 -450 264 1 4113 150 3 0 chrY 17730735 17731369 -6981710 - HERVK3 LTR ERVK -5729 1514 879 387 164 0 87 chrY 17731378 17731482 -6981597 + LTR3 LTR ERVK 327 421 -11 5049 45 1 4 chrY 17731678 17732324 -6980755 - L1P LINE L1 -824 5350 4710 7655 31 0 0 chrY 17732324 17733165 -6979914 + L1PA2 LINE L1 5310 6155 0 1933 231 47 7 chrY 17733231 17733834 -6979245 - L1P3 LINE L1 -5185 690 9 216 0 0 0 chrY 17734615 17734639 -6978440 + (T)n Simple_repeat Simple_repeat 1 24 0 354 23 0 0 chrY 17735152 17735195 -6977884 + (TG)n Simple_repeat Simple_repeat 2 44 0 1674 178 28 0 chrY 17735974 17736260 -6976819 - AluSx SINE Alu -10 302 9 22 0 0 0 chrY 17736420 17736442 -6976637 + AT_rich Low_complexity Low_complexity 1 22 0 1748 166 3 32 chrY 17736546 17736859 -6976220 - AluSq SINE Alu -5 308 5 3193 84 2 104 chrY 17737603 17738102 -6974977 - LTR7 LTR ERV1 -2 448 1 10198 83 9 12 chrY 17738102 17739335 -6973744 - HERVH LTR ERV1 0 7713 6483 2552 94 123 20 chrY 17739335 17739741 -6973338 + LTR7 LTR ERV1 1 448 -2 10198 83 9 12 chrY 17739741 17739905 -6973174 - HERVH LTR ERV1 -1230 6483 6320 * 15238 176 30 29 chrY 17739898 17746428 -6966651 - HERVH LTR ERV1 -1317 5212 1 2937 100 0 102 chrY 17746430 17746929 -6966150 - LTR7 LTR ERV1 -2 448 1 1697 148 21 100 chrY 17747760 17748099 -6964980 - AluSx SINE Alu 0 312 1 31 0 0 0 chrY 17749350 17749381 -6963698 + AT_rich Low_complexity Low_complexity 1 31 0 41075 57 22 4 chrY 17749439 17755475 -6957604 - L1PA3 LINE L1 -4 6151 3 4819 178 95 24 chrY 17755486 17755599 -6957480 - MER52A-int LTR ERV1 -2949 4588 4484 1890 146 0 7 chrY 17755599 17755902 -6957177 - AluSx SINE Alu 0 312 19 4819 178 95 24 chrY 17755902 17756929 -6956150 - MER52A-int LTR ERV1 -3053 4484 3367 313 129 29 114 chrY 17756922 17756992 -6956087 - MER52A-int LTR ERV1 -2937 4059 1238 * 514 231 0 9 chrY 17756991 17757099 -6955980 + MER52-int LTR ERV1 980 1086 -6005 737 219 40 30 chrY 17757147 17757348 -6955731 - LTR4 LTR ERV1 -41 555 353 316 118 82 82 chrY 17757404 17757489 -6955590 - MER52A-int LTR ERV1 -6313 778 694 3834 156 10 2 chrY 17757491 17758068 -6955011 - MER52A-int LTR ERV1 -4812 2279 1698 426 59 0 0 chrY 17758091 17758142 -6954937 - MER52A-int LTR ERV1 -5335 1756 1706 2083 225 47 60 chrY 17758263 17758382 -6954697 - MER52A-int LTR ERV1 -6520 571 452 943 39 16 0 chrY 17758382 17758510 -6954569 + (GGAA)n Simple_repeat Simple_repeat 3 132 0 2083 225 47 60 chrY 17758510 17758960 -6954119 - MER52A-int LTR ERV1 -6639 452 9 5061 251 111 51 chrY 17758960 17760538 -6952541 - MER52A LTR ERV1 0 1755 1 618 261 7 45 chrY 17760538 17761052 -6952027 + BSR/Beta Satellite Satellite 1 494 0 595 250 32 21 chrY 17761080 17761875 -6951204 + BSR/Beta Satellite Satellite 1 804 -34 236 363 29 0 chrY 17761918 17762020 -6951059 + BSR/Beta Satellite Satellite 45 149 -3 1187 240 37 93 chrY 17762174 17762336 -6950743 + BSR/Beta Satellite Satellite 1 171 -1197 2064 153 0 3 chrY 17762336 17762643 -6950436 + AluSq SINE Alu 1 306 -7 1187 240 37 93 chrY 17762643 17762977 -6950102 + BSR/Beta Satellite Satellite 171 522 -846 1453 181 0 97 chrY 17762977 17763319 -6949760 + AluY SINE Alu 1 309 -2 1187 240 37 93 chrY 17763319 17763423 -6949656 + BSR/Beta Satellite Satellite 522 1178 -190 431 81 0 48 chrY 17763521 17763583 -6949496 - HERVK3 LTR ERVK -2505 4738 4680 2414 109 0 0 chrY 17763586 17763916 -6949163 - HERVK3 LTR ERVK -2949 4294 3965 739 228 7 7 chrY 17763905 17764054 -6949025 - HERVK3 LTR ERVK -3559 3684 3536 * 3919 131 3 0 chrY 17764053 17764626 -6948453 - HERVK3 LTR ERVK -4582 2661 2087 3331 159 26 12 chrY 17764626 17765231 -6947848 - LTR6A LTR ERV1 0 564 1 41442 59 23 1 chrY 17765425 17771442 -6941637 + L1PA2 LINE L1 1 6154 -1 2049 218 19 37 chrY 17771443 17771961 -6941118 + MER52A-int LTR ERV1 2251 2759 -2458 1177 189 5 0 chrY 17771973 17772169 -6940910 + MER52A-int LTR ERV1 3702 3898 -1319 1249 211 69 10 chrY 17772221 17772572 -6940507 + MER52A-int LTR ERV1 4899 5216 -1 3781 250 133 43 chrY 17772579 17773853 -6939226 + MER52A LTR ERV1 10 1474 -281 215 103 26 0 chrY 17773856 17773895 -6939184 + (TA)n Simple_repeat Simple_repeat 1 40 0 780 234 0 0 chrY 17773923 17774077 -6939002 - BSR/Beta Satellite Satellite -225 154 1 599 272 24 36 chrY 17774127 17774469 -6938610 - BSR/Beta Satellite Satellite -9 1052 707 856 0 9 9 chrY 17774469 17774574 -6938505 + (TTTC)n Simple_repeat Simple_repeat 4 108 0 599 272 24 36 chrY 17774574 17775192 -6937887 - BSR/Beta Satellite Satellite -354 707 1 509 250 18 39 chrY 17775206 17775620 -6937459 - BSR/Beta Satellite Satellite 0 405 1 1765 199 55 34 chrY 17775622 17776161 -6936918 - MLT2A2 LTR ERVL -1 553 1 1845 171 0 3 chrY 17776356 17776661 -6936418 - AluSc SINE Alu -5 304 1 601 267 24 40 chrY 17776696 17777116 -6935963 - BSR/Beta Satellite Satellite 0 413 1 552 279 21 41 chrY 17777127 17777970 -6935109 - BSR/Beta Satellite Satellite -10 825 1 404 284 15 28 chrY 17777993 17778274 -6934805 - BSR/Beta Satellite Satellite 0 277 1 980 295 34 26 chrY 17778295 17779216 -6933863 - BSR/Beta Satellite Satellite -1 928 1 613 265 25 39 chrY 17779236 17781006 -6932073 - BSR/Beta Satellite Satellite 0 1745 1 1220 268 25 35 chrY 17781027 17781569 -6931510 - BSR/Beta Satellite Satellite -1 1172 626 1537 162 3 61 chrY 17781569 17781897 -6931182 - AluY SINE Alu 0 311 1 1220 268 25 35 chrY 17781897 17782212 -6930867 - BSR/Beta Satellite Satellite -547 626 1 1303 283 17 35 chrY 17782322 17782760 -6930319 - BSR/Beta Satellite Satellite -10 1734 1290 2203 178 28 14 chrY 17782760 17783119 -6929960 - THE1B LTR MaLR 0 364 1 1303 283 17 35 chrY 17783119 17784088 -6928991 - BSR/Beta Satellite Satellite -454 1290 1 710 247 7 21 chrY 17784102 17784480 -6928599 - BSR/Beta Satellite Satellite 0 372 1 635 238 4 50 chrY 17784491 17785146 -6927933 - BSR/Beta Satellite Satellite 0 1082 112 1713 189 51 40 chrY 17785146 17785517 -6927562 - THE1C LTR MaLR 0 375 1 635 238 4 50 chrY 17785517 17785625 -6927454 - BSR/Beta Satellite Satellite -970 112 1 648 245 16 55 chrY 17785637 17787878 -6925201 - BSR/Beta Satellite Satellite -3 2154 1 1611 169 3 80 chrY 17788035 17788373 -6924706 + AluSx SINE Alu 1 312 0 258 353 25 0 chrY 17788527 17788649 -6924430 - BSR/Beta Satellite Satellite -7 145 21 2204 195 88 23 chrY 17788795 17789273 -6923806 - LTR22 LTR ERVK 0 509 1 31601 122 7 3 chrY 17789273 17793767 -6919312 - HERVK22 LTR ERVK 0 6837 2327 2661 170 60 4 chrY 17793762 17794216 -6918863 - HERVK22 LTR ERVK -5932 905 427 * 6148 225 38 31 chrY 17794230 17794286 -6918793 + L1P3 LINE L1 1 55 -6406 234 0 0 0 chrY 17794286 17794312 -6918767 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 6148 225 38 31 chrY 17794312 17796423 -6916656 + L1P3 LINE L1 55 2238 -4223 444 247 21 0 chrY 17796425 17796522 -6916557 + LTR6A LTR ERV1 466 564 0 661 207 25 0 chrY 17798782 17798903 -6914176 - LTR12 LTR ERV1 -232 482 359 235 261 0 0 chrY 17798903 17798968 -6914111 - LTR30 LTR ERV1 -98 624 560 1240 144 0 115 chrY 17798970 17799240 -6913839 - LTR12 LTR ERV1 -423 291 53 246 250 0 0 chrY 17799240 17799292 -6913787 - LTR30 LTR ERV1 -670 52 1 545 192 0 10 chrY 17799751 17799850 -6913229 + MER4A LTR ERV1 1 98 -566 1289 214 6 88 chrY 17799902 17800219 -6912860 + MER4A LTR ERV1 372 662 -2 7525 51 5 0 chrY 17800355 17801475 -6911604 - L1PA4 LINE L1 -3 6152 5031 23 0 0 0 chrY 17802108 17802131 -6910948 + AT_rich Low_complexity Low_complexity 1 23 0 1778 164 4 0 chrY 17802153 17802461 -6910618 + AluSx SINE Alu 1 309 0 1772 187 0 0 chrY 17802514 17802819 -6910260 + AluSg SINE Alu 1 305 -5 2106 137 100 51 chrY 17803317 17803706 -6909373 + MER51D LTR ERV1 2 370 -287 1705 174 4 0 chrY 17803706 17803981 -6909098 + AluSc SINE Alu 1 276 -33 231 36 0 0 chrY 17803984 17804012 -6909067 + (GAAAA)n Simple_repeat Simple_repeat 4 31 0 2106 137 100 51 chrY 17804012 17804087 -6908992 + MER51D LTR ERV1 371 493 -164 943 148 7 0 chrY 17804087 17804229 -6908850 - AluSc SINE Alu -166 143 1 444 229 19 9 chrY 17804229 17804334 -6908745 + MER51D LTR ERV1 490 595 -62 21 36 0 0 chrY 17805393 17805421 -6907658 + AT_rich Low_complexity Low_complexity 1 28 0 280 337 59 40 chrY 17805716 17806120 -6906959 + LOR1-int LTR ERV1 4230 4641 -3115 2334 106 0 10 chrY 17806847 17807159 -6905920 - AluSc SINE Alu 0 309 1 1200 195 129 85 chrY 17808979 17809600 -6903479 + LOR1-int LTR ERV1 1739 3604 -2994 2599 173 105 25 chrY 17810021 17810623 -6902456 + MER51D LTR ERV1 8 657 0 1793 150 0 18 chrY 17812083 17812475 -6900604 - AluY SINE Alu 0 387 1 1234 204 4 9 chrY 17812653 17812883 -6900196 - MER4A LTR ERV1 0 664 436 2485 199 76 54 chrY 17812921 17813630 -6899449 - LTR8A LTR ERV1 -2 725 1 557 252 0 0 chrY 17813631 17813738 -6899341 + AluSg/x SINE Alu 168 274 -36 49 84 0 0 chrY 17813798 17813917 -6899162 + AT_rich Low_complexity Low_complexity 1 119 0 1650 187 27 139 chrY 17814110 17814537 -6898542 - MER65C LTR ERV1 0 461 101 2442 87 0 0 chrY 17814537 17814835 -6898244 - AluSg SINE Alu -12 298 1 1650 187 27 139 chrY 17814835 17814926 -6898153 - MER65C LTR ERV1 -360 101 1 6574 210 31 15 chrY 17814948 17816425 -6896654 - L1MA3 LINE L1 0 6305 4852 3880 107 2 6 chrY 17816425 17816938 -6896141 - MER9 LTR ERVK 0 511 1 6574 210 31 15 chrY 17816938 17817240 -6895839 - L1MA3 LINE L1 -1453 4852 4556 336 24 0 0 chrY 17817240 17817281 -6895798 + (TG)n Simple_repeat Simple_repeat 2 42 0 6574 210 31 15 chrY 17817281 17818031 -6895048 - L1MA3 LINE L1 -1749 4556 3753 742 220 0 17 chrY 17818031 17818204 -6894875 - L1MA8 LINE L1 -161 6130 5961 3095 196 72 31 chrY 17818362 17819114 -6893965 - L1MA7 LINE L1 -139 6152 5370 1488 217 16 7 chrY 17819116 17819425 -6893654 - AluSx SINE Alu 0 312 1 385 228 110 35 chrY 17819500 17819645 -6893434 + MLT1D LTR MaLR 1 156 -349 3532 182 30 76 chrY 17819669 17820481 -6892598 - LTR1 LTR ERV1 0 785 12 742 243 53 100 chrY 17820489 17820790 -6892289 + MLT1D LTR MaLR 162 486 -19 1872 153 3 3 chrY 17821003 17821291 -6891788 - AluY SINE Alu -23 288 1 1714 203 0 0 chrY 17821803 17822113 -6890966 + AluSx SINE Alu 1 310 -2 26 0 0 0 chrY 17822113 17822139 -6890940 + AT_rich Low_complexity Low_complexity 1 26 0 228 182 0 0 chrY 17822988 17823032 -6890047 + HAL1 LINE L1 2111 2154 -353 1933 168 0 0 chrY 17823120 17823412 -6889667 - AluSx SINE Alu -20 292 1 1913 171 0 3 chrY 17823791 17824084 -6888995 + AluSx SINE Alu 1 292 -20 263 267 0 13 chrY 17824338 17824413 -6888666 + GA-rich Low_complexity Low_complexity 2 75 0 242 255 88 20 chrY 17824451 17824553 -6888526 + MER65C LTR ERV1 1 109 -352 590 243 43 27 chrY 17824583 17824768 -6888311 + MER65B LTR ERV1 231 418 -113 1279 188 0 5 chrY 17824769 17824982 -6888097 - AluSx SINE Alu -100 212 1 651 269 19 0 chrY 17825037 17825223 -6887856 - AluJo SINE Alu 0 308 120 35969 89 12 4 chrY 17825223 17831326 -6881753 - L1PA5 LINE L1 -4 6150 11 282 200 0 0 chrY 17831510 17831575 -6881504 - L1MB5 LINE L1 -25 6149 6085 725 298 4 4 chrY 17831577 17831822 -6881257 - L1MB5 LINE L1 -156 6018 5774 319 258 23 78 chrY 17831899 17832027 -6881052 - L1MB5 LINE L1 -749 5417 5297 476 289 30 20 chrY 17832035 17832336 -6880743 - L1MB5 LINE L1 -816 5330 5027 276 30 0 0 chrY 17833272 17833305 -6879774 + (TG)n Simple_repeat Simple_repeat 2 34 0 317 322 0 0 chrY 17833311 17833401 -6879678 + L1MC4 LINE L1 6614 6703 -1339 324 0 0 0 chrY 17833401 17833437 -6879642 + (TA)n Simple_repeat Simple_repeat 2 37 0 226 278 0 0 chrY 17833753 17833825 -6879254 - L1MB5 LINE L1 -1825 4321 4250 1722 246 57 31 chrY 17833837 17833964 -6879115 - MER21B LTR ERV1 -371 492 370 1780 159 10 17 chrY 17833964 17834265 -6878814 + AluSq SINE Alu 1 299 -14 1722 246 57 31 chrY 17834265 17834342 -6878737 - MER21B LTR ERV1 -493 370 296 1519 234 92 10 chrY 17834342 17834735 -6878344 - MSTB LTR MaLR -1 425 1 1722 246 57 31 chrY 17834735 17835005 -6878074 - MER21B LTR ERV1 -567 296 5 1930 151 57 23 chrY 17835064 17835416 -6877663 + THE1B LTR MaLR 1 364 0 1733 204 40 34 chrY 17835501 17836160 -6876919 - MER21B-int LTR ERV1 -59 4132 3378 2809 209 36 29 chrY 17836161 17836859 -6876220 + MER50 LTR ERV1 2 704 -30 2696 256 26 15 chrY 17836875 17837605 -6875474 - MER21B-int LTR ERV1 -802 3389 2652 1790 207 78 83 chrY 17837598 17838294 -6874785 - MER21B-int LTR ERV1 -1484 2707 2016 * 280 58 19 39 chrY 17838301 17838353 -6874726 + (TTTC)n Simple_repeat Simple_repeat 3 53 0 821 115 54 20 chrY 17838371 17838519 -6874560 - L1PA8A LINE L1 -3 6128 5976 2821 168 60 58 chrY 17838799 17839274 -6873805 - MER4B-int LTR ERV1 -1617 5141 4663 1581 126 153 0 chrY 17839274 17839528 -6873551 - AluSc SINE Alu -15 294 2 2821 168 60 58 chrY 17839528 17839741 -6873338 - MER4B-int LTR ERV1 -2095 4663 4452 1129 201 51 4 chrY 17839740 17839974 -6873105 - MER4B-int LTR ERV1 -2670 4088 3844 * 555 249 54 45 chrY 17840280 17840501 -6872578 + MER61E LTR ERV1 341 563 -6 362 196 10 59 chrY 17840509 17840611 -6872468 + MER61-int LTR ERV1 1 97 -6899 * 3054 260 46 62 chrY 17840609 17842943 -6870136 + MER61-int LTR ERV1 259 2807 -4189 2954 154 98 12 chrY 17842941 17843530 -6869549 + LTR19A-int LTR ERV1 645 1284 -4302 * 3302 125 7 4 chrY 17843527 17844085 -6868994 + LTR19A-int LTR ERV1 1436 1995 -3591 357 129 0 0 chrY 17844086 17844148 -6868931 - PABL_A-int LTR ERV1 -2125 2890 2829 * 19809 120 40 34 chrY 17844140 17844222 -6868857 + LTR19A-int LTR ERV1 1995 2075 -3511 1974 167 7 0 chrY 17844222 17844527 -6868552 - AluSg SINE Alu 0 310 4 19809 120 40 34 chrY 17844527 17848018 -6865061 + LTR19A-int LTR ERV1 2075 5586 0 2107 173 36 57 chrY 17848018 17848514 -6864565 + LTR19A LTR ERV1 1 486 0 1857 193 15 52 chrY 17848514 17848991 -6864088 + MER61-int LTR ERV1 4747 5205 -2213 967 219 102 55 chrY 17848991 17849412 -6863667 + LTR7 LTR ERV1 1 441 -9 4972 187 54 36 chrY 17849416 17850918 -6862161 + MER61-int LTR ERV1 2885 4359 -2637 975 102 0 24 chrY 17850918 17851085 -6861994 + (TTTC)n Simple_repeat Simple_repeat 2 164 0 1841 170 0 7 chrY 17851085 17851367 -6861712 - AluSx SINE Alu -32 280 1 4972 187 54 36 chrY 17851367 17851587 -6861492 + MER61-int LTR ERV1 4358 6995 -1 290 234 16 0 chrY 17851652 17851716 -6861363 + LTR25 LTR ERV1 288 352 -442 665 251 57 9 chrY 17851896 17852107 -6860972 + MER61E LTR ERV1 344 564 -5 676 226 39 83 chrY 17852117 17852347 -6860732 - MER4B-int LTR ERV1 -2913 3845 3626 484 277 93 20 chrY 17852386 17853232 -6859847 - L1M2 LINE L1 -3954 3255 2303 1120 232 29 72 chrY 17853265 17853732 -6859347 - LTR10B LTR ERV1 -6 541 1 6968 288 23 32 chrY 17853732 17855501 -6857578 - LTR10B-int LTR ERV1 0 7769 5984 2297 116 3 0 chrY 17855501 17855811 -6857268 - AluY SINE Alu 0 311 1 1847 132 25 18 chrY 17855814 17856141 -6856938 - AluY SINE Alu 0 329 1 6968 288 23 32 chrY 17856141 17857462 -6855617 - LTR10B-int LTR ERV1 -1787 5982 4062 198 0 0 0 chrY 17857462 17857484 -6855595 + (T)n Simple_repeat Simple_repeat 1 22 0 26514 47 3 0 chrY 17857524 17861800 -6851279 - L1PA3 LINE L1 0 6155 1867 5473 277 41 32 chrY 17861812 17866438 -6846641 - LTR10B-int LTR ERV1 -2945 4120 26 897 263 19 63 chrY 17866462 17866781 -6846298 - LTR10B LTR ERV1 0 547 243 287 253 42 11 chrY 17866861 17866956 -6846123 - LTR10B LTR ERV1 -449 98 1 367 275 81 48 chrY 17866956 17867094 -6845985 - L1M2 LINE L1 -4945 2264 2132 1714 188 3 0 chrY 17867094 17867387 -6845692 - AluSx SINE Alu -17 295 2 367 275 81 48 chrY 17867387 17867705 -6845374 - L1M2 LINE L1 -5077 2132 1774 360 0 0 0 chrY 17867705 17867745 -6845334 + (TTTTG)n Simple_repeat Simple_repeat 3 42 0 367 275 81 48 chrY 17867745 17867791 -6845288 - L1M2 LINE L1 -5435 1774 1731 233 395 26 20 chrY 17868633 17868785 -6844294 - L1M2 LINE L1 -6351 858 706 228 333 0 0 chrY 17868867 17868957 -6844122 + L1MA5 LINE L1 2655 2744 -3402 1302 264 72 28 chrY 17868985 17869799 -6843280 + L1MA5 LINE L1 3951 4800 -1346 1160 264 66 62 chrY 17869857 17870092 -6842987 + L1MA5 LINE L1 5514 5747 -553 195 42 0 0 chrY 17870092 17870116 -6842963 + (CA)n Simple_repeat Simple_repeat 2 25 0 1160 264 66 62 chrY 17870116 17870604 -6842475 + L1MA5 LINE L1 5747 6240 -60 351 214 60 95 chrY 17870641 17870809 -6842270 + L1MA6 LINE L1 5148 5309 -837 564 225 8 0 chrY 17870809 17870938 -6842141 + AluSg/x SINE Alu 179 308 -4 484 198 0 0 chrY 17870938 17871034 -6842045 + L1MA6 LINE L1 5665 5760 -540 685 265 5 0 chrY 17871037 17871226 -6841853 + L1MA6 LINE L1 5831 6020 -280 5129 47 2 0 chrY 17871834 17872457 -6840622 - L1PA3 LINE L1 0 6155 5532 9437 63 19 0 chrY 17872457 17873888 -6839191 - L1P LINE L1 -3983 2163 708 1886 251 60 58 chrY 17874063 17875105 -6837974 - L1MA6 LINE L1 -3 6297 5254 1582 157 40 0 chrY 17875106 17875355 -6837724 - AluSg SINE Alu -2 308 50 1395 228 22 12 chrY 17875356 17875759 -6837320 - L1MA6 LINE L1 -1827 4319 3913 859 266 17 10 chrY 17875765 17876055 -6837024 + LTR22B LTR ERVK 5 296 -196 875 201 5 62 chrY 17876087 17876311 -6836768 + LTR22B LTR ERVK 279 489 -3 1653 166 15 66 chrY 17876458 17876850 -6836229 + HERVK22 LTR ERVK 13 384 -6453 3540 137 108 14 chrY 17876850 17877479 -6835600 - LTR12 LTR ERV1 0 688 1 4561 132 20 3 chrY 17877482 17878238 -6834841 - HERV9 LTR ERV1 -4 8395 7627 1947 185 102 81 chrY 17878236 17879118 -6833961 - HERV9 LTR ERV1 -5156 1740 840 * 1244 106 5 0 chrY 17879119 17879307 -6833772 - HERV9 LTR ERV1 -3455 4944 4756 * 17762 128 8 20 chrY 17879306 17882258 -6830821 - HERV9 LTR ERV1 -5427 2972 56 1500 217 16 3 chrY 17882328 17882632 -6830447 + HERVK22 LTR ERVK 381 688 -6149 22 56 0 0 chrY 17883006 17883042 -6830037 + AT_rich Low_complexity Low_complexity 1 36 0 409 250 0 0 chrY 17883084 17883176 -6829903 + HERVK22 LTR ERVK 2382 2473 -4364 5826 183 49 3 chrY 17883185 17883285 -6829794 + HERVK22 LTR ERVK 2027 2121 -3141 2334 109 0 0 chrY 17883285 17883587 -6829492 - AluY SINE Alu -9 302 1 5826 183 49 3 chrY 17883587 17884930 -6828149 + HERVK22 LTR ERVK 2121 2453 -2809 881 241 31 45 chrY 17884929 17885220 -6827859 + pTR5 LTR ERV1 742 1028 -1410 * 4503 115 14 57 chrY 17885277 17885996 -6827083 + LTR12 LTR ERV1 1 688 0 916 137 0 20 chrY 17885996 17886142 -6826937 + HERVK22 LTR ERVK 4203 4347 -2490 965 158 0 6 chrY 17886143 17886301 -6826778 + HERVK22 LTR ERVK 4767 4923 -1914 2982 194 33 58 chrY 17886458 17887389 -6825690 + HERVKC4 LTR ERVK 2678 6837 0 886 252 20 14 chrY 17887389 17887683 -6825396 + LTR22B LTR ERVK 1 296 -196 1191 107 0 3 chrY 17887707 17887921 -6825158 - AluY SINE Alu -11 300 14 806 211 4 62 chrY 17887934 17888161 -6824918 + LTR22B LTR ERVK 279 492 0 2040 254 147 40 chrY 17888195 17889732 -6823347 - L1 LINE L1 -2236 5329 3629 4054 163 15 58 chrY 17889745 17890424 -6822655 - L1PA12 LINE L1 -2 6166 5537 1620 146 16 93 chrY 17890424 17890747 -6822332 - AluY SINE Alu -9 302 5 4054 163 15 58 chrY 17890747 17891092 -6821987 - L1PA12 LINE L1 -631 5537 5179 231 176 39 0 chrY 17891097 17891148 -6821931 + L1P LINE L1 2312 2364 -3782 333 201 34 40 chrY 17891197 17891346 -6821733 - L1 LINE L1 -3986 3580 3433 23 54 0 0 chrY 17891494 17891531 -6821548 + AT_rich Low_complexity Low_complexity 1 37 0 990 285 55 61 chrY 17891534 17892767 -6820312 - L1 LINE L1 -4372 3193 2063 565 246 62 82 chrY 17892887 17893143 -6819936 - L1 LINE L1 -6617 872 622 298 240 13 58 chrY 17893400 17893554 -6819525 + L1M3e LINE L1 18 164 -6866 2207 139 8 0 chrY 17894887 17895239 -6817840 + THE1A LTR MaLR 1 355 0 9309 147 24 4 chrY 17895240 17896775 -6816304 + THE1A-int LTR MaLR 2 1566 -14 444 103 15 0 chrY 17896780 17896848 -6816231 + THE1A LTR MaLR 1 69 -286 4021 86 0 0 chrY 17896849 17897433 -6815646 - L1P LINE L1 -3012 3134 2551 6721 67 3 3 chrY 17897433 17898585 -6814494 + L1PA6 LINE L1 4999 6153 -1 183 42 0 0 chrY 17898636 17898660 -6814419 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 1528 163 45 14 chrY 17898663 17898952 -6814127 + THE1A LTR MaLR 58 355 0 24 0 0 0 chrY 17899163 17899187 -6813892 + AT_rich Low_complexity Low_complexity 1 24 0 342 237 144 33 chrY 17899438 17899558 -6813521 - MSTD LTR MaLR -263 133 1 1518 210 105 8 chrY 17899616 17900006 -6813073 + MSTA LTR MaLR 1 428 0 491 199 8 32 chrY 17900038 17900175 -6812904 + Tigger2 DNA MER2_type 43 2452 -266 324 0 0 0 chrY 17900226 17900262 -6812817 + (TTA)n Simple_repeat Simple_repeat 3 38 0 15695 133 19 3 chrY 17900262 17903673 -6809406 - L1PA7 LINE L1 -18 6136 2666 2589 121 40 104 chrY 17903673 17904278 -6808801 + L1PA7 LINE L1 2099 2664 -3482 1914 244 72 13 chrY 17904313 17905006 -6808073 - L1MA4 LINE L1 -25 6275 5542 26 74 0 0 chrY 17905029 17905083 -6807996 + AT_rich Low_complexity Low_complexity 1 54 0 761 292 35 10 chrY 17905146 17905434 -6807645 - LTR44 LTR ERV1 -1 518 224 21 36 0 0 chrY 17905495 17905523 -6807556 + AT_rich Low_complexity Low_complexity 1 28 0 1880 252 52 26 chrY 17907045 17907743 -6805336 + L1MA4A LINE L1 5258 5973 -330 717 266 140 4 chrY 17907783 17908313 -6804766 + L1MA6 LINE L1 2963 3564 -2582 1188 257 26 72 chrY 17908369 17908446 -6804633 + L1MA6 LINE L1 4704 4783 -1363 3561 139 87 10 chrY 17908446 17909059 -6804020 - PABL_A LTR ERV1 0 660 1 1188 257 26 72 chrY 17909059 17909705 -6803374 + L1MA6 LINE L1 4783 5394 -752 301 225 0 0 chrY 17909843 17909914 -6803165 + L1MA6 LINE L1 5530 5600 -700 5655 177 22 5 chrY 17909937 17911018 -6802061 + L1PA8A LINE L1 4 1103 -4772 * 7653 137 6 65 chrY 17911011 17912017 -6801062 + L1PA8A LINE L1 4110 5174 -1272 2039 142 0 0 chrY 17912017 17912312 -6800767 - AluY SINE Alu -16 295 1 7653 137 6 65 chrY 17912312 17913623 -6799456 + L1PA8A LINE L1 5174 6290 -156 9947 166 30 16 chrY 17913623 17915488 -6797591 + MER61A-int LTR ERV1 3319 5208 -9 419 205 12 0 chrY 17915499 17915582 -6797497 + MER61A LTR ERV1 3 86 -257 1118 217 128 29 chrY 17915586 17916085 -6796994 - LTR61 LTR ERV1 0 595 1 1106 204 31 15 chrY 17916092 17916352 -6796727 + MER61A LTR ERV1 80 343 0 477 182 78 136 chrY 17916380 17916482 -6796597 + L1MA6 LINE L1 6008 6114 -186 1857 158 4 4 chrY 17916482 17916760 -6796319 + AluSg SINE Alu 6 283 -27 477 182 78 136 chrY 17916760 17916965 -6796114 + L1MA6 LINE L1 6114 6297 -3 2224 104 10 7 chrY 17917037 17917346 -6795733 + AluY SINE Alu 1 310 -1 1642 166 4 8 chrY 17917563 17917850 -6795229 + AluSp SINE Alu 42 313 0 243 133 0 0 chrY 17918392 17918437 -6794642 + (TC)n Simple_repeat Simple_repeat 2 46 0 575 204 77 44 chrY 17918453 17918634 -6794445 - L1M2 LINE L1 -549 7167 6981 * 3493 209 41 104 chrY 17918632 17918667 -6794412 + L1MB5 LINE L1 1420 1456 -6109 1811 168 16 0 chrY 17918667 17918842 -6794237 - AluSg SINE Alu -1 309 125 189 0 0 0 chrY 17918842 17918863 -6794216 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1811 168 16 0 chrY 17918863 17918991 -6794088 - AluSg SINE Alu -185 125 1 3493 209 41 104 chrY 17918991 17919954 -6793125 + L1MB5 LINE L1 1456 2310 -5255 1590 199 7 4 chrY 17919954 17920275 -6792804 - AluSg SINE Alu 0 325 4 3493 209 41 104 chrY 17920275 17920668 -6792411 + L1MB5 LINE L1 2310 2726 -4839 3283 184 54 65 chrY 17920672 17921539 -6791540 + L1MB5 LINE L1 5694 6544 -1036 1887 94 0 8 chrY 17921539 17921784 -6791295 + AluY SINE Alu 50 292 -19 3283 184 54 65 chrY 17921784 17922042 -6791037 + L1MB5 LINE L1 6544 6803 -777 271 269 97 18 chrY 17922072 17922351 -6790728 + L1MB5 LINE L1 7068 7368 -225 265 308 11 43 chrY 17922796 17922981 -6790098 + CT-rich Low_complexity Low_complexity 2 180 0 22 0 0 0 chrY 17923861 17923883 -6789196 + AT_rich Low_complexity Low_complexity 1 22 0 2746 236 63 38 chrY 17924116 17924878 -6788201 + MST-int LTR MaLR 1 781 -870 6925 247 37 22 chrY 17924895 17925332 -6787747 - L1M2 LINE L1 -743 6822 6393 968 260 38 45 chrY 17925332 17925624 -6787455 + AluJb SINE Alu 1 290 -12 6925 247 37 22 chrY 17925624 17927812 -6785267 - L1M2 LINE L1 -1172 6393 4269 867 164 12 195 chrY 17927815 17928236 -6784843 - L1PB3 LINE L1 -3 6151 5808 * 5326 286 44 33 chrY 17928213 17929329 -6783750 - L1M2 LINE L1 -5758 1807 666 1936 137 20 0 chrY 17929329 17929621 -6783458 - AluY SINE Alu -12 299 2 5326 286 44 33 chrY 17929621 17930152 -6782927 - L1M2 LINE L1 -6899 666 142 275 151 93 5 chrY 17930213 17930296 -6782783 + L1M1 LINE L1 5793 5881 -419 3439 242 78 57 chrY 17930302 17931294 -6781785 - L1MA5 LINE L1 0 6300 5330 1908 136 42 0 chrY 17931294 17931581 -6781498 - AluSg1 SINE Alu -10 299 1 3439 242 78 57 chrY 17931581 17931856 -6781223 - L1MA5 LINE L1 -970 5330 5062 2014 127 0 37 chrY 17931856 17932180 -6780899 - AluSx SINE Alu 0 312 1 3439 242 78 57 chrY 17932180 17933711 -6779368 - L1MA5 LINE L1 -1238 5062 3440 34 0 0 0 chrY 17933718 17933752 -6779327 + AT_rich Low_complexity Low_complexity 1 34 0 5202 212 30 18 chrY 17933754 17936130 -6776949 - L1MA1 LINE L1 0 7721 5309 240 111 0 0 chrY 17936182 17936218 -6776861 + (TTTTA)n Simple_repeat Simple_repeat 2 37 0 282 240 194 21 chrY 17936314 17936602 -6776477 - L1MA5 LINE L1 -2684 3462 3125 1047 247 28 14 chrY 17936618 17936909 -6776170 - L1MA1 LINE L1 -2283 5282 4988 1202 194 9 5 chrY 17936909 17937126 -6775953 - AluSx SINE Alu -94 218 1 1002 268 22 6 chrY 17937137 17937503 -6775576 - L1MA1 LINE L1 -5001 2564 2193 578 191 46 0 chrY 17937533 17937664 -6775415 - L1MA3 LINE L1 -38 6267 6131 403 299 65 9 chrY 17937661 17937892 -6775187 - L1MA5 LINE L1 -3038 3108 2865 * 20626 156 28 15 chrY 17937887 17941905 -6771174 - L1PA8A LINE L1 -611 5835 1768 737 231 96 65 chrY 17941905 17942323 -6770756 - LTR15 LTR ERV1 0 595 168 31923 266 22 31 chrY 17942385 17950892 -6762187 - HERV3 LTR ERV1 0 8426 1 700 197 88 131 chrY 17950893 17951029 -6762050 - LTR15 LTR ERV1 0 596 456 2224 102 0 0 chrY 17951029 17951322 -6761757 - AluY SINE Alu -18 293 1 700 197 88 131 chrY 17951322 17951606 -6761473 - LTR15 LTR ERV1 -140 456 172 9357 170 25 19 chrY 17951666 17953020 -6760059 - L1PA8A LINE L1 -4691 1760 406 183 80 0 0 chrY 17953020 17953045 -6760034 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 9357 170 25 19 chrY 17953045 17953449 -6759630 - L1PA8A LINE L1 -6045 406 6 21 36 0 0 chrY 17953701 17953729 -6759350 + AT_rich Low_complexity Low_complexity 1 28 0 590 296 61 55 chrY 17953765 17954144 -6758935 - L1M4 LINE L1 -1489 4657 4277 378 289 108 40 chrY 17954152 17954401 -6758678 - L1M4 LINE L1 -1967 4179 3914 24 32 0 0 chrY 17954610 17954641 -6758438 + AT_rich Low_complexity Low_complexity 1 31 0 1242 285 17 24 chrY 17954658 17955072 -6758007 - L1PB4 LINE L1 -24 6132 5722 537 58 0 0 chrY 17955072 17955141 -6757938 + (TA)n Simple_repeat Simple_repeat 1 69 0 654 168 25 107 chrY 17955141 17955338 -6757741 - AluSg/x SINE Alu -10 300 120 1570 229 61 19 chrY 17955338 17955948 -6757131 - L1PB4 LINE L1 -441 5715 5083 2043 273 52 42 chrY 17956040 17957244 -6755835 - L1M4 LINE L1 -2364 3782 2568 2851 223 64 10 chrY 17957337 17958108 -6754971 - L1PB4 LINE L1 -12 6144 5333 4181 182 40 34 chrY 17958158 17959187 -6753892 - L1PA14 LINE L1 -33 6128 5108 1124 286 40 64 chrY 17959211 17960128 -6752951 - L1PB4 LINE L1 -2988 3158 2264 262 204 0 111 chrY 17960199 17960230 -6752849 - L1MB8 LINE L1 -37 6141 6108 1788 169 7 14 chrY 17960230 17960525 -6752554 + AluSx SINE Alu 1 293 -19 262 204 0 111 chrY 17960525 17960601 -6752478 - L1MB8 LINE L1 -70 6108 6046 665 342 28 63 chrY 17960769 17960841 -6752238 + L1M2 LINE L1 16 89 -6760 2366 72 3 0 chrY 17960841 17961131 -6751948 - AluY SINE Alu -8 303 13 665 342 28 63 chrY 17961131 17961453 -6751626 + L1M2 LINE L1 89 396 -6453 2109 326 19 51 chrY 17961928 17962920 -6750159 + L1M2 LINE L1 792 1751 -5098 3057 231 35 14 chrY 17962934 17963727 -6749352 - L1PA16 LINE L1 -9 7595 6786 1292 281 96 36 chrY 17963777 17964680 -6748399 - L1PA16 LINE L1 -4447 3137 2182 290 96 0 19 chrY 17964780 17964832 -6748247 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 2032 110 0 31 chrY 17964850 17965210 -6747869 + AluY SINE Alu 1 350 0 1468 205 0 7 chrY 17965210 17965488 -6747591 - AluSx SINE Alu -36 276 1 226 337 53 0 chrY 17965638 17965733 -6747346 - L1PA16 LINE L1 -5399 2182 2083 498 398 43 26 chrY 17965991 17966453 -6746626 - L1PA16 LINE L1 -6317 1257 788 627 258 49 25 chrY 17966466 17966649 -6746430 + L1M2 LINE L1 1742 1919 -4930 2320 103 0 3 chrY 17966649 17966961 -6746118 + AluY SINE Alu 1 311 0 627 258 49 25 chrY 17966961 17967188 -6745891 + L1M2 LINE L1 1919 2173 -4676 406 348 82 32 chrY 17967268 17967663 -6745416 + L1MA7 LINE L1 17 426 -6422 3467 181 16 97 chrY 17968364 17969228 -6743851 - LTR25 LTR ERV1 0 794 1 250 326 11 11 chrY 17969242 17969331 -6743748 + L1PA15-16 LINE L1 1471 1559 -5290 283 226 23 119 chrY 17969540 17969618 -6743461 + L1MA7 LINE L1 2821 2905 -3943 1734 104 26 30 chrY 17969618 17969887 -6743192 + AluY SINE Alu 39 306 -5 1206 248 3 27 chrY 17969897 17970196 -6742883 + AluJb SINE Alu 1 292 -10 186 43 0 0 chrY 17970203 17970226 -6742853 + (CA)n Simple_repeat Simple_repeat 2 24 0 283 226 23 119 chrY 17970226 17970389 -6742690 + L1MA7 LINE L1 2920 3056 -3792 4686 284 68 35 chrY 17970422 17973305 -6739774 + L1MA7 LINE L1 3012 5987 -861 733 148 7 84 chrY 17973305 17973460 -6739619 + THE1-int LTR MaLR 1364 1506 -74 827 218 170 57 chrY 17973515 17973850 -6739229 - THE1C LTR MaLR -2 373 1 7085 195 10 72 chrY 17973855 17975480 -6737599 - MSTA-int LTR MaLR -6 1574 53 2261 86 0 3 chrY 17975480 17975783 -6737296 - AluY SINE Alu -9 302 1 7085 195 10 72 chrY 17975783 17975832 -6737247 - MSTA-int LTR MaLR -1527 53 3 1555 186 146 11 chrY 17975834 17976211 -6736868 - MSTA LTR MaLR 0 428 1 929 258 42 15 chrY 17976211 17976544 -6736535 + L1P5 LINE L1 5322 5663 -493 * 1998 260 64 22 chrY 17976527 17977250 -6735829 + L1MA7 LINE L1 6175 6935 -58 306 87 0 0 chrY 17977250 17977296 -6735783 + (TAGA)n Simple_repeat Simple_repeat 1 46 0 1998 260 64 22 chrY 17977296 17977352 -6735727 + L1MA7 LINE L1 6935 6987 -6 180 111 0 0 chrY 17977701 17977728 -6735351 + (TA)n Simple_repeat Simple_repeat 2 28 0 261 0 0 0 chrY 17977753 17977782 -6735297 + (TG)n Simple_repeat Simple_repeat 2 30 0 1770 159 14 3 chrY 17977882 17978165 -6734914 - AluSq SINE Alu -18 295 10 496 202 0 29 chrY 17978562 17978666 -6734413 - FRAM SINE Alu -8 168 68 2352 91 0 7 chrY 17978677 17978986 -6734093 - AluY SINE Alu -4 307 1 332 300 154 24 chrY 17979037 17979284 -6733795 - L1M4c LINE L1 -4035 2349 2071 423 329 102 25 chrY 17979361 17979509 -6733570 - L1M4c LINE L1 -4253 2130 1995 1963 96 6 78 chrY 17979509 17979843 -6733236 - AluY SINE Alu -1 310 1 423 329 102 25 chrY 17979843 17979997 -6733082 - L1M4c LINE L1 -4388 1995 1591 24 0 0 0 chrY 17980017 17980041 -6733038 + AT_rich Low_complexity Low_complexity 1 24 0 34 45 0 15 chrY 17980062 17980095 -6732984 + AT_rich Low_complexity Low_complexity 1 33 -32 4292 95 0 10 chrY 17980095 17980707 -6732372 - L1PA7 LINE L1 -3 6151 5546 34 45 0 15 chrY 17980707 17980739 -6732340 + AT_rich Low_complexity Low_complexity 33 65 0 318 331 12 0 chrY 17980779 17980951 -6732128 - L1M1 LINE L1 -4453 3112 2939 11151 118 17 6 chrY 17981004 17982771 -6730308 + L1P LINE L1 2406 4192 -1954 26 0 0 0 chrY 17983059 17983085 -6729994 + AT_rich Low_complexity Low_complexity 1 26 0 1126 213 0 30 chrY 17983090 17983320 -6729759 - AluJb SINE Alu -81 231 9 2016 287 46 41 chrY 17984267 17985905 -6727174 + L1PB4 LINE L1 669 2419 -3784 5610 178 17 6 chrY 17985941 17987134 -6725945 - L1MA2 LINE L1 0 6304 5101 11572 69 13 7 chrY 17987154 17988728 -6724351 + L1P LINE L1 3409 4991 -1155 1513 46 0 0 chrY 17988725 17988919 -6724160 - L1P LINE L1 -965 5181 4988 * 7018 205 16 69 chrY 17988963 17990628 -6722451 + THE1C-int LTR MaLR 3 1578 -2 805 256 91 60 chrY 17990637 17990988 -6722091 + THE1C LTR MaLR 14 375 0 454 246 102 0 chrY 17991106 17991224 -6721855 - L1M1 LINE L1 -5733 1832 1703 842 279 71 0 chrY 17991226 17991466 -6721613 - L1M1 LINE L1 -6439 1126 870 * 1008 274 38 46 chrY 17991452 17991931 -6721148 + L1PB4 LINE L1 4747 5221 -982 354 147 0 0 chrY 17991931 17991999 -6721080 + (TA)n Simple_repeat Simple_repeat 2 69 0 3318 220 25 5 chrY 17992089 17992935 -6720144 + L1PB4 LINE L1 5247 6109 -104 232 200 17 0 chrY 17992938 17992998 -6720081 + L1PB4 LINE L1 6143 6203 -10 371 252 26 0 chrY 17993007 17993122 -6719957 - L1M LINE L1 -744 5422 5305 416 330 91 46 chrY 17993178 17993638 -6719441 - L1M4 LINE L1 -914 5232 4752 263 303 11 0 chrY 17993991 17994080 -6718999 - MIR SINE MIR -3 259 170 32 26 0 0 chrY 17994812 17994851 -6718228 + AT_rich Low_complexity Low_complexity 1 39 0 2734 7 0 0 chrY 17994851 17995144 -6717935 - AluYa5 SINE Alu -16 295 3 1144 233 69 49 chrY 17995340 17995386 -6717693 - THE1C LTR MaLR -12 363 319 297 68 0 0 chrY 17995386 17995430 -6717649 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 1144 233 69 49 chrY 17995430 17995730 -6717349 - THE1C LTR MaLR -56 319 10 5216 213 44 13 chrY 17995740 17996853 -6716226 - THE1C-int LTR MaLR -5 1575 428 1317 230 29 16 chrY 17997013 17997368 -6715711 + LTR10B LTR ERV1 176 505 0 1383 143 19 143 chrY 17997380 17997757 -6715322 - THE1C-int LTR MaLR -1249 331 2 1519 211 29 52 chrY 17997757 17998141 -6714938 - THE1C LTR MaLR 0 375 1 609 343 55 10 chrY 17998375 17998664 -6714415 + LTR16A LTR ERVL 53 354 -96 2910 120 18 29 chrY 17999289 17999732 -6713347 + MLT2A1 LTR ERVL 1 438 -6 858 178 31 0 chrY 17999734 17999897 -6713182 + HERVL-A1 LTR ERVL 1 168 -5486 846 100 0 0 chrY 17999901 18000021 -6713058 + MLT2A2 LTR ERVL 1 120 -333 9900 132 5 6 chrY 18000021 18002629 -6710450 + HERVL-A1 LTR ERVL 186 2837 -2817 25 31 0 0 chrY 18002881 18002913 -6710166 + AT_rich Low_complexity Low_complexity 1 32 0 332 281 149 36 chrY 18003027 18003827 -6709252 + L1M4 LINE L1 2678 3567 -2579 1030 239 102 11 chrY 18003993 18004257 -6708822 - MSTA LTR MaLR 0 428 141 4543 102 21 128 chrY 18004276 18005197 -6707882 - LTR12 LTR ERV1 0 826 5 1881 211 32 39 chrY 18005213 18005797 -6707282 - pTR5 LTR ERV1 -1094 1344 765 493 148 38 10 chrY 18005799 18005905 -6707174 - MSTA LTR MaLR -260 115 1 419 283 31 62 chrY 18006137 18006395 -6706684 + L1M4 LINE L1 4051 4300 -1846 579 196 19 0 chrY 18006517 18006624 -6706455 + MER2 DNA MER2_type 2 110 -235 1473 266 41 62 chrY 18006843 18007144 -6705935 + MER66B-int LTR ERV1 4548 4854 -2902 2089 138 0 0 chrY 18007144 18007440 -6705639 - AluSc SINE Alu -13 296 1 1473 266 41 62 chrY 18007440 18008170 -6704909 + MER66B-int LTR ERV1 4854 6030 -1726 2042 114 3 39 chrY 18008170 18008477 -6704602 - AluY SINE Alu -15 296 1 1473 266 41 62 chrY 18008477 18008623 -6704456 + MER66B-int LTR ERV1 6030 6177 -1579 1506 223 28 6 chrY 18008757 18009080 -6703999 + MER66B-int LTR ERV1 6347 6676 0 1306 245 73 34 chrY 18009080 18009546 -6703533 + MER66B LTR ERV1 1 484 -2 522 237 104 36 chrY 18009597 18009905 -6703174 + MER96B DNA MER1_type? 24 352 -65 1996 238 61 14 chrY 18009922 18010572 -6702507 - L1MC1 LINE L1 -22 6311 5593 239 267 142 0 chrY 18010597 18010717 -6702362 - L1MC1 LINE L1 -834 5510 5374 688 168 49 0 chrY 18010721 18010864 -6702215 + FRAM SINE Alu 25 174 -2 273 129 43 29 chrY 18010874 18010944 -6702135 + GA-rich Low_complexity Low_complexity 4 74 0 1415 191 31 10 chrY 18011052 18011346 -6701733 - AluSg1 SINE Alu -9 300 1 385 245 32 0 chrY 18011640 18011734 -6701345 + FLAM_C SINE Alu 13 109 -24 337 134 15 45 chrY 18011746 18011813 -6701266 - MER1B DNA MER1_type -13 320 256 1301 186 49 4 chrY 18011959 18012222 -6700857 - MER1B DNA MER1_type -64 275 1 245 110 98 73 chrY 18012287 18012332 -6700747 + L1MA7 LINE L1 6179 6228 -63 701 231 140 34 chrY 18012332 18012596 -6700483 + AluSq SINE Alu 2 293 -10 245 110 98 73 chrY 18012596 18012632 -6700447 + L1MA7 LINE L1 6228 6262 -29 28 48 0 0 chrY 18013067 18013109 -6699970 + AT_rich Low_complexity Low_complexity 1 42 0 24 0 0 0 chrY 18014671 18014695 -6698384 + AT_rich Low_complexity Low_complexity 1 24 0 2174 61 75 0 chrY 18015052 18015332 -6697747 - AluSp SINE Alu -12 301 1 1793 155 0 0 chrY 18015361 18015625 -6697454 - AluSc SINE Alu -45 264 1 282 87 0 0 chrY 18015804 18015850 -6697229 + (T)n Simple_repeat Simple_repeat 1 46 0 2198 92 0 7 chrY 18015979 18016272 -6696807 + AluY SINE Alu 1 291 -20 973 259 27 44 chrY 18016722 18017019 -6696060 - AluJo SINE Alu -10 292 1 21 0 0 0 chrY 18017134 18017155 -6695924 + AT_rich Low_complexity Low_complexity 1 21 0 2046 245 136 16 chrY 18018471 18019235 -6693844 - L1MB5 LINE L1 -13 6161 5306 2031 31 0 27 chrY 18020180 18020438 -6692641 + L1PA3 LINE L1 5905 6155 0 690 168 21 28 chrY 18020609 18020752 -6692327 + AluSp/q SINE Alu 171 312 -1 1551 184 28 7 chrY 18021631 18021913 -6691166 - AluSg SINE Alu -20 290 3 1221 230 21 7 chrY 18022416 18022707 -6690372 + AluJb SINE Alu 3 297 -5 769 250 71 44 chrY 18022990 18023131 -6689948 - MLT1A1 LTR MaLR -7 421 285 2055 136 3 3 chrY 18023131 18023439 -6689640 - AluSc SINE Alu -1 308 1 769 250 71 44 chrY 18023439 18023581 -6689498 - MLT1A1 LTR MaLR -143 285 80 685 260 125 34 chrY 18023590 18024006 -6689073 - LTR65-int LTR ERV1 -258 4678 4225 315 235 24 0 chrY 18023991 18024076 -6689003 - LTR65-int LTR ERV1 -817 5514 5428 * 230 91 101 0 chrY 18024076 18024175 -6688904 + (TA)n Simple_repeat Simple_repeat 1 109 0 1136 212 13 9 chrY 18024199 18024307 -6688772 - AluJb SINE Alu -80 232 126 222 37 0 0 chrY 18024307 18024334 -6688745 + (TTTG)n Simple_repeat Simple_repeat 1 27 0 1136 212 13 9 chrY 18024334 18024456 -6688623 - AluJb SINE Alu -186 126 1 1360 231 46 46 chrY 18024477 18024909 -6688170 - LTR65-int LTR ERV1 -829 4107 3676 514 194 0 0 chrY 18024996 18025099 -6687980 - AluSg/x SINE Alu -3 309 207 1867 173 0 0 chrY 18025005 18025305 -6687774 - AluSx SINE Alu -12 300 1 2003 238 72 42 chrY 18025366 18026389 -6686690 - LTR65-int LTR ERV1 -3570 1366 287 190 182 45 0 chrY 18026420 18026508 -6686571 + (TAGA)n Simple_repeat Simple_repeat 3 94 0 300 27 0 0 chrY 18028632 18028669 -6684410 + (A)n Simple_repeat Simple_repeat 1 37 0 245 352 24 32 chrY 18028815 18028940 -6684139 + L1M3de LINE L1 723 846 -6283 242 318 11 91 chrY 18029505 18029593 -6683486 + L1M3de LINE L1 767 1496 -5633 2109 307 44 57 chrY 18029615 18030748 -6682331 + L1M3de LINE L1 286 2051 -4602 22 35 0 0 chrY 18030759 18030788 -6682291 + AT_rich Low_complexity Low_complexity 1 29 0 1924 142 3 10 chrY 18030788 18031098 -6681981 + AluSx SINE Alu 1 308 -4 1543 264 103 78 chrY 18031128 18031898 -6681181 + L1M3de LINE L1 1 789 -6420 891 276 22 77 chrY 18031913 18032315 -6680764 + L1M3de LINE L1 1553 1932 -5277 372 332 142 45 chrY 18032328 18032729 -6680350 - L1MEc LINE L1 -5918 478 39 1287 174 83 8 chrY 18033126 18033390 -6679689 - AluSg SINE Alu -15 285 2 1348 292 83 11 chrY 18033772 18034396 -6678683 - LTR65 LTR ERV1 0 669 1 1384 206 14 4 chrY 18035212 18035488 -6677591 + AluSx SINE Alu 13 291 -21 484 66 0 0 chrY 18035499 18035598 -6677481 + L1PA5 LINE L1 6078 6176 0 844 204 0 24 chrY 18035635 18035802 -6677277 - FRAM SINE Alu -7 169 7 306 292 22 0 chrY 18036386 18036475 -6676604 + L2 LINE L2 3223 3313 0 23 0 0 0 chrY 18036587 18036610 -6676469 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chrY 18037876 18037897 -6675182 + AT_rich Low_complexity Low_complexity 1 21 0 444 290 36 0 chrY 18039622 18039760 -6673319 - MIR SINE MIR -25 237 95 1126 252 50 28 chrY 18040667 18041024 -6672055 - MLT1E LTR MaLR -2 591 227 1488 212 3 24 chrY 18041143 18041436 -6671643 + AluJo SINE Alu 7 293 -19 236 326 68 14 chrY 18041453 18041600 -6671479 - L2 LINE L2 -2521 793 639 387 356 27 11 chrY 18041656 18041844 -6671235 - L2 LINE L2 -2836 478 288 1262 260 43 24 chrY 18042553 18042976 -6670103 - MLT1C LTR MaLR 0 467 37 180 0 0 0 chrY 18042977 18042997 -6670082 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 22 56 0 0 chrY 18043928 18043964 -6669115 + AT_rich Low_complexity Low_complexity 1 36 0 21 71 0 0 chrY 18043986 18044028 -6669051 + AT_rich Low_complexity Low_complexity 1 42 0 2225 110 0 0 chrY 18044675 18044976 -6668103 + AluY SINE Alu 1 301 -10 207 0 0 0 chrY 18045293 18045316 -6667763 + (A)n Simple_repeat Simple_repeat 1 23 0 21 71 0 0 chrY 18045822 18045864 -6667215 + AT_rich Low_complexity Low_complexity 1 42 0 1256 195 22 106 chrY 18046146 18046551 -6666528 + MLT1B LTR MaLR 1 371 -19 322 282 24 0 chrY 18047339 18047424 -6665655 + MIR SINE MIR 49 135 -127 428 286 24 8 chrY 18047590 18047716 -6665363 - MIR3 SINE MIR -15 193 66 25 75 0 0 chrY 18048332 18048385 -6664694 + AT_rich Low_complexity Low_complexity 1 53 0 1768 146 20 3 chrY 18048785 18049080 -6663999 - AluSp SINE Alu -13 300 1 301 348 74 57 chrY 18049470 18049927 -6663152 + L2 LINE L2 2831 3295 -18 3485 128 30 0 chrY 18050049 18050612 -6662467 - LTR19B LTR ERV1 0 580 1 1202 160 4 27 chrY 18050613 18050838 -6662241 - HERVFH19I LTR ERV1 -1 7718 7499 * 4348 170 30 19 chrY 18050833 18052079 -6661000 - LTR19-int LTR ERV1 -332 6884 3788 10423 51 1 0 chrY 18052155 18054226 -6658853 - L1PA4 LINE L1 0 6155 4081 546 203 0 0 chrY 18054231 18054379 -6658700 + CT-rich Low_complexity Low_complexity 1 148 0 25 65 0 0 chrY 18055783 18055829 -6657250 + AT_rich Low_complexity Low_complexity 1 46 0 40517 68 6 1 chrY 18056101 18062220 -6650859 + L1PA4 LINE L1 4 6153 -2 21 36 0 0 chrY 18062336 18062364 -6650715 + AT_rich Low_complexity Low_complexity 1 28 0 1698 184 7 0 chrY 18062364 18062647 -6650432 - AluSx SINE Alu -25 287 3 2001 148 10 7 chrY 18063279 18063589 -6649490 + AluY SINE Alu 1 311 0 26 0 0 0 chrY 18063860 18063886 -6649193 + AT_rich Low_complexity Low_complexity 1 26 0 213 132 0 0 chrY 18065967 18066005 -6647074 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 371 130 0 14 chrY 18066323 18066392 -6646687 + (TTCC)n Simple_repeat Simple_repeat 3 70 0 385 169 0 26 chrY 18067703 18067780 -6645299 + L1MA9 LINE L1 6078 6152 -160 212 0 36 0 chrY 18067782 18067810 -6645269 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 24 0 0 0 chrY 18067963 18067987 -6645092 + AT_rich Low_complexity Low_complexity 1 24 0 347 335 52 24 chrY 18068323 18068571 -6644508 + L1MC/D LINE L1 4415 4669 -1477 1731 145 32 7 chrY 18068646 18068973 -6644106 - AluSq SINE Alu 0 334 1 1870 140 3 0 chrY 18069357 18069642 -6643437 + AluSc SINE Alu 1 286 -23 180 92 0 108 chrY 18069645 18069710 -6643369 + (TAAAAA)n Simple_repeat Simple_repeat 4 61 0 428 297 72 49 chrY 18069790 18070176 -6642903 + L1MC/D LINE L1 5291 5683 -481 199 0 0 61 chrY 18070439 18070472 -6642607 + (TA)n Simple_repeat Simple_repeat 2 32 0 588 272 87 11 chrY 18070691 18070875 -6642204 - MIR SINE MIR -24 238 41 394 244 110 50 chrY 18071045 18071119 -6641960 + L1M4c LINE L1 2300 2368 -4014 3437 130 34 4 chrY 18071119 18071682 -6641397 + LTR19B LTR ERV1 1 580 0 394 244 110 50 chrY 18071682 18071919 -6641160 + L1M4c LINE L1 2368 2642 -3740 784 222 110 156 chrY 18072039 18072539 -6640540 + MLT2B1 LTR ERVL 5 481 -39 259 278 22 11 chrY 18072555 18072645 -6640434 - L1MC4 LINE L1 -1339 6703 6613 239 286 43 50 chrY 18073139 18073300 -6639779 + L1MC/D LINE L1 5652 5811 -1997 257 258 209 33 chrY 18074797 18074979 -6638100 + L2 LINE L2 2196 2409 -905 21 36 0 0 chrY 18075395 18075423 -6637656 + AT_rich Low_complexity Low_complexity 1 28 0 186 306 32 16 chrY 18076333 18076395 -6636684 - MER5A DNA MER1_type -73 116 54 265 307 60 0 chrY 18076871 18077021 -6636058 + L1M3 LINE L1 5366 5524 -647 28 29 0 0 chrY 18077129 18077164 -6635915 + AT_rich Low_complexity Low_complexity 1 35 0 30 0 0 0 chrY 18077295 18077325 -6635754 + AT_rich Low_complexity Low_complexity 1 30 0 27 29 0 0 chrY 18077413 18077447 -6635632 + AT_rich Low_complexity Low_complexity 1 34 0 35 0 0 0 chrY 18080404 18080439 -6632640 + AT_rich Low_complexity Low_complexity 1 35 0 545 235 0 0 chrY 18081078 18081197 -6631882 + MER41E LTR ERV1 1 119 -393 26 30 0 0 chrY 18083097 18083130 -6629949 + AT_rich Low_complexity Low_complexity 1 33 0 2302 82 0 3 chrY 18084651 18084970 -6628109 - L1PA6 LINE L1 0 6154 5837 749 69 0 0 chrY 18084970 18085071 -6628008 + L1P3 LINE L1 5432 5532 -622 1583 122 87 14 chrY 18085446 18085734 -6627345 - LTR1 LTR ERV1 -104 681 373 299 262 56 24 chrY 18088743 18088869 -6624210 + MLT1F LTR MaLR 386 515 -27 917 259 134 0 chrY 18089337 18089599 -6623480 + AluSx SINE Alu 1 297 -5 1469 201 0 30 chrY 18089666 18089969 -6623110 + AluSx SINE Alu 12 305 -7 323 145 14 0 chrY 18089974 18090043 -6623036 + GA-rich Low_complexity Low_complexity 4 73 0 367 257 7 118 chrY 18090671 18090815 -6622264 - FLAM_C SINE Alu -5 128 1 281 307 10 10 chrY 18090932 18091033 -6622046 + MLT1E LTR MaLR 361 461 -132 270 95 0 0 chrY 18091048 18091090 -6621989 + (TG)n Simple_repeat Simple_repeat 2 43 0 820 341 37 16 chrY 18091881 18092312 -6620767 - L1M3b LINE L1 -5788 493 54 1586 189 0 36 chrY 18092402 18092704 -6620375 + AluSg SINE Alu 1 291 -19 1337 213 50 70 chrY 18092908 18093349 -6619730 - MSTB1 LTR MaLR 0 432 1 1684 166 6 56 chrY 18093681 18094001 -6619078 + AluSx SINE Alu 1 304 -8 244 337 47 30 chrY 18094030 18094276 -6618803 - L1M3de LINE L1 -5301 1352 605 233 336 0 8 chrY 18094390 18094515 -6618564 - L1M3d LINE L1 -5758 133 10 268 172 11 0 chrY 18094550 18094615 -6618464 - L1MA4 LINE L1 -11 6289 6223 391 254 43 0 chrY 18094617 18094764 -6618315 + L1MA4 LINE L1 5999 6157 -145 1265 226 8 15 chrY 18094765 18095030 -6618049 - AluSx SINE Alu -47 265 3 1318 201 35 24 chrY 18095502 18095791 -6617288 + AluSg SINE Alu 1 292 -18 714 209 34 33 chrY 18097703 18098023 -6615056 + L1M4 LINE L1 5276 5601 -583 1090 216 98 9 chrY 18098221 18098354 -6614725 + L1MB5 LINE L1 5313 5433 -747 225 0 0 0 chrY 18098354 18098379 -6614700 + (CA)n Simple_repeat Simple_repeat 1 25 0 1090 216 98 9 chrY 18098379 18098593 -6614486 + L1MB5 LINE L1 5433 5691 -489 1031 260 51 9 chrY 18098648 18098983 -6614096 + L1MB5 LINE L1 5817 6165 -9 1424 171 91 0 chrY 18100558 18100832 -6612247 + AluSc SINE Alu 1 299 -10 202 200 89 0 chrY 18100998 18101043 -6612036 - L2 LINE L2 -12 3260 3212 1610 165 4 4 chrY 18101331 18101597 -6611482 - AluSc SINE Alu -23 286 21 213 39 0 0 chrY 18103119 18103145 -6609934 + (CA)n Simple_repeat Simple_repeat 2 27 0 25 65 0 0 chrY 18103296 18103342 -6609737 + AT_rich Low_complexity Low_complexity 1 46 0 7447 35 1 0 chrY 18103413 18104592 -6608487 + L1PA3 LINE L1 4976 6155 0 21 36 0 0 chrY 18104597 18104625 -6608454 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chrY 18104765 18104800 -6608279 + AT_rich Low_complexity Low_complexity 1 35 0 782 272 0 25 chrY 18104864 18105103 -6607976 - AluJb SINE Alu -78 234 2 371 132 0 44 chrY 18105294 18105362 -6607717 + MER1B DNA MER1_type 211 275 -64 245 174 0 0 chrY 18105528 18105574 -6607505 + MER1B DNA MER1_type 272 317 -16 517 234 9 0 chrY 18105585 18105692 -6607387 - FLAM_C SINE Alu -33 110 3 5346 153 123 23 chrY 18108702 18109868 -6603211 + pTR5 LTR ERV1 743 2025 -413 279 235 31 20 chrY 18109868 18109966 -6603113 + LTR30 LTR ERV1 544 642 -80 1457 98 5 0 chrY 18109976 18110191 -6602888 + pTR5 LTR ERV1 177 392 -2046 735 162 0 7 chrY 18112241 18112265 -6600814 - AluSx SINE Alu -3 309 286 300 70 0 0 chrY 18112265 18112308 -6600771 + (TG)n Simple_repeat Simple_repeat 2 44 0 735 162 0 7 chrY 18112308 18112419 -6600660 - AluSx SINE Alu -26 286 175 1095 189 0 11 chrY 18112539 18112724 -6600355 - AluSx SINE Alu -129 183 1 23 0 0 0 chrY 18112793 18112816 -6600263 + AT_rich Low_complexity Low_complexity 1 23 0 1969 141 0 0 chrY 18113018 18113301 -6599778 + AluSq SINE Alu 1 283 -30 387 311 125 29 chrY 18114013 18114293 -6598786 + L2 LINE L2 2196 2502 -812 243 61 0 0 chrY 18115424 18115457 -6597622 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 252 284 27 27 chrY 18115562 18115636 -6597443 - MER5A DNA MER1_type -73 116 43 247 329 48 0 chrY 18116106 18116252 -6596827 + L1M3 LINE L1 5365 5517 -654 34 55 0 0 chrY 18116367 18116422 -6596657 + AT_rich Low_complexity Low_complexity 1 55 0 23 0 0 0 chrY 18117012 18117035 -6596044 + AT_rich Low_complexity Low_complexity 1 23 0 201 158 0 40 chrY 18117339 18117415 -6595664 + (TTAA)n Simple_repeat Simple_repeat 4 76 0 33 25 0 0 chrY 18118420 18118460 -6594619 + AT_rich Low_complexity Low_complexity 1 40 0 32 81 0 0 chrY 18118617 18118691 -6594388 + AT_rich Low_complexity Low_complexity 1 74 0 21 0 0 0 chrY 18118762 18118783 -6594296 + AT_rich Low_complexity Low_complexity 1 21 0 3544 173 46 25 chrY 18118966 18119756 -6593323 + L1PA16 LINE L1 5357 6162 -4 25 31 0 0 chrY 18119757 18119789 -6593290 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chrY 18121801 18121824 -6591255 + AT_rich Low_complexity Low_complexity 1 23 0 546 235 0 0 chrY 18122658 18122777 -6590302 + MER41E LTR ERV1 1 119 -393 2610 170 39 67 chrY 18123121 18123822 -6589257 - LTR1 LTR ERV1 -104 681 1 228 275 88 0 chrY 18123990 18124070 -6589009 - LTR33A LTR ERVL -335 188 102 203 147 0 0 chrY 18124983 18125017 -6588062 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 564 275 42 18 chrY 18125077 18125244 -6587835 - AluJo SINE Alu -132 180 10 215 325 26 26 chrY 18125597 18125714 -6587365 - MIR SINE MIR -15 247 131 29 47 0 0 chrY 18127326 18127369 -6585710 + AT_rich Low_complexity Low_complexity 1 43 0 2503 237 59 63 chrY 18129673 18130700 -6582379 + L1MA8 LINE L1 4555 5568 -723 2394 70 0 0 chrY 18130700 18130999 -6582080 + AluY SINE Alu 2 300 -11 2503 237 59 63 chrY 18130999 18131625 -6581454 + L1MA8 LINE L1 5568 6195 -96 1186 205 96 17 chrY 18133458 18133596 -6579483 + L1MB5 LINE L1 5308 5434 -740 207 0 0 0 chrY 18133596 18133619 -6579460 + (CA)n Simple_repeat Simple_repeat 1 23 0 1186 205 96 17 chrY 18133619 18133836 -6579243 + L1MB5 LINE L1 5434 5691 -483 1185 272 48 6 chrY 18133891 18134222 -6578857 + L1MB5 LINE L1 5817 6161 -13 27 0 0 0 chrY 18135548 18135575 -6577504 + AT_rich Low_complexity Low_complexity 1 27 0 1007 287 28 17 chrY 18135682 18135971 -6577108 + AluJo SINE Alu 1 292 -10 2207 83 6 29 chrY 18136546 18136858 -6576221 - AluY SINE Alu -6 305 1 26 0 0 0 chrY 18137400 18137426 -6575653 + AT_rich Low_complexity Low_complexity 1 26 0 1230 214 48 7 chrY 18137704 18138000 -6575079 - AluSg SINE Alu 0 307 1 216 0 0 0 chrY 18138010 18138034 -6575045 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 225 385 19 0 chrY 18139084 18139188 -6573891 - L2 LINE L2 -287 3026 2921 25 65 0 0 chrY 18139671 18139717 -6573362 + AT_rich Low_complexity Low_complexity 1 46 0 260 246 39 15 chrY 18139740 18139870 -6573209 + (TA)n Simple_repeat Simple_repeat 1 133 0 17506 124 8 11 chrY 18139874 18143322 -6569757 - L1PA7 LINE L1 -3 6151 2706 186 279 0 0 chrY 18143407 18143450 -6569629 - L2 LINE L2 -713 2601 2559 337 238 50 6 chrY 18143770 18143930 -6569149 + (TA)n Simple_repeat Simple_repeat 2 168 0 4372 105 0 40 chrY 18147917 18148524 -6564555 - LTR14C LTR ERVK -2 585 3 15718 93 8 9 chrY 18148527 18149020 -6564059 - HERVK14C LTR ERVK -1 7416 6924 2541 30 0 20 chrY 18149020 18149321 -6563758 - AluY SINE Alu -16 295 1 15718 93 8 9 chrY 18149321 18150957 -6562122 - HERVK14C LTR ERVK -493 6924 5289 * 17648 111 19 3 chrY 18150938 18153453 -6559626 - HERVK14C LTR ERVK -4863 2554 1 4184 118 7 30 chrY 18153453 18154054 -6559025 - LTR14C LTR ERVK 0 587 1 231 320 6 41 chrY 18157580 18157752 -6555327 + CT-rich Low_complexity Low_complexity 1 166 0 180 77 0 0 chrY 18158886 18158912 -6554167 + (GA)n Simple_repeat Simple_repeat 1 26 0 804 234 101 14 chrY 18158914 18159123 -6553956 - AluJb SINE Alu -30 282 56 1109 263 3 7 chrY 18162830 18163115 -6549964 + AluJo SINE Alu 8 291 -21 1957 141 4 0 chrY 18163125 18163402 -6549677 + AluSx SINE Alu 6 283 -29 1885 163 3 0 chrY 18165170 18165471 -6547608 + AluSx SINE Alu 1 302 -10 339 105 0 0 chrY 18172573 18172630 -6540449 + (TG)n Simple_repeat Simple_repeat 2 58 0 2276 102 23 0 chrY 18173161 18173465 -6539614 - AluY SINE Alu 0 311 1 252 147 0 107 chrY 18174620 18174698 -6538381 + (TTCCC)n Simple_repeat Simple_repeat 1 69 0 356 281 73 60 chrY 18175454 18175635 -6537444 - L1M4c LINE L1 -5042 1342 1154 1099 240 23 36 chrY 18175635 18175939 -6537140 - AluJb SINE Alu -1 301 2 356 281 73 60 chrY 18175939 18176059 -6537020 - L1M4c LINE L1 -5230 1154 1037 1832 248 120 41 chrY 18176237 18177849 -6535230 - L1MA8 LINE L1 0 6291 4560 21 0 0 0 chrY 18179887 18179908 -6533171 + AT_rich Low_complexity Low_complexity 1 21 0 22 70 0 0 chrY 18180155 18180198 -6532881 + AT_rich Low_complexity Low_complexity 1 43 0 535 204 18 9 chrY 18182253 18182366 -6530713 + FLAM_C SINE Alu 10 123 -20 234 0 0 0 chrY 18182367 18182393 -6530686 + (TTAA)n Simple_repeat Simple_repeat 2 27 0 367 205 13 0 chrY 18182425 18182537 -6530542 + FRAM SINE Alu 72 184 0 192 81 81 0 chrY 18183048 18183085 -6529994 + L2 LINE L2 3274 3313 0 248 291 103 8 chrY 18183492 18183609 -6529470 + LTR33A LTR ERVL 95 222 -301 2644 176 33 60 chrY 18183738 18184438 -6528641 + LTR1 LTR ERV1 1 681 -104 603 200 0 0 chrY 18184801 18184916 -6528163 - MER41E LTR ERV1 -397 115 1 21 0 0 0 chrY 18185732 18185753 -6527326 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chrY 18186844 18186865 -6526214 + AT_rich Low_complexity Low_complexity 1 21 0 3494 177 35 24 chrY 18187816 18188614 -6524465 - L1PA16 LINE L1 -3 6163 5357 23 0 0 0 chrY 18188719 18188742 -6524337 + AT_rich Low_complexity Low_complexity 1 23 0 22 56 0 0 chrY 18188911 18188947 -6524132 + AT_rich Low_complexity Low_complexity 1 36 0 26 50 0 0 chrY 18189101 18189141 -6523938 + AT_rich Low_complexity Low_complexity 1 40 0 27 29 0 0 chrY 18190390 18190424 -6522655 + AT_rich Low_complexity Low_complexity 1 34 0 22 35 0 0 chrY 18190758 18190787 -6522292 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chrY 18190886 18190910 -6522169 + AT_rich Low_complexity Low_complexity 1 24 0 241 333 38 0 chrY 18191195 18191354 -6521725 - L1M3 LINE L1 -654 5517 5353 236 127 32 63 chrY 18191984 18192047 -6521032 + A-rich Low_complexity Low_complexity 3 63 0 383 311 125 29 chrY 18193164 18193444 -6519635 - L2 LINE L2 -812 2502 2196 1668 157 30 0 chrY 18194156 18194424 -6518655 - AluSq SINE Alu -30 283 8 1657 176 0 10 chrY 18196137 18196438 -6516641 + AluSg SINE Alu 1 298 -12 21 36 0 0 chrY 18196987 18197015 -6516064 + AT_rich Low_complexity Low_complexity 1 28 0 812 264 25 29 chrY 18197914 18198156 -6514923 - AluJo SINE Alu -71 241 1 1629 240 150 17 chrY 18199618 18200277 -6512802 - L1MB5 LINE L1 -13 6161 5415 277 143 0 0 chrY 18200291 18200340 -6512739 + L1PA6 LINE L1 6106 6154 0 261 223 109 9 chrY 18200341 18200484 -6512595 - L1MB5 LINE L1 -746 5423 5254 445 203 20 60 chrY 18200644 18200828 -6512251 - L1M4 LINE L1 -583 5601 5415 275 106 0 0 chrY 18200842 18200889 -6512190 + L1PA6 LINE L1 6106 6152 -2 243 204 80 11 chrY 18200916 18201004 -6512075 - L1M4 LINE L1 -787 5397 5304 610 190 77 101 chrY 18201196 18201390 -6511689 - L1M4 LINE L1 -577 5601 5399 317 83 0 0 chrY 18201390 18201438 -6511641 + L1PA6 LINE L1 6106 6153 -1 610 190 77 101 chrY 18201438 18201580 -6511499 - L1M4 LINE L1 -779 5399 5255 482 191 7 50 chrY 18201781 18201922 -6511157 - L1M4 LINE L1 -625 5549 5415 263 143 0 0 chrY 18201936 18201985 -6511094 + L1PA6 LINE L1 6106 6154 0 274 219 67 9 chrY 18201986 18202091 -6510988 - L1M4 LINE L1 -755 5423 5313 542 195 29 51 chrY 18202285 18202517 -6510562 - L1M4 LINE L1 -583 5601 5365 1268 216 32 11 chrY 18204527 18204810 -6508269 - AluSg SINE Alu -11 289 1 1462 194 3 14 chrY 18205276 18205560 -6507519 + AluSx SINE Alu 7 287 -25 1229 229 7 45 chrY 18205626 18205936 -6507143 - AluJo SINE Alu -13 299 2 450 273 35 0 chrY 18205983 18206155 -6506924 - L1MA4 LINE L1 -124 6176 5999 255 154 17 0 chrY 18206157 18206218 -6506861 + L1MA4 LINE L1 6223 6287 -15 231 188 0 0 chrY 18206230 18206278 -6506801 + CT-rich Low_complexity Low_complexity 3 50 0 1380 223 3 7 chrY 18206307 18206599 -6506480 - AluSx SINE Alu -17 295 5 926 214 0 0 chrY 18206639 18206826 -6506253 - AluSg/x SINE Alu -1 311 125 248 279 71 36 chrY 18207325 18207465 -6505614 - MLT1F LTR MaLR -28 514 370 1798 163 0 0 chrY 18207935 18208218 -6504861 - AluSq SINE Alu -30 283 1 1589 173 14 3 chrY 18208515 18208798 -6504281 + AluSx SINE Alu 1 286 -26 510 222 0 0 chrY 18213816 18213915 -6499164 + AluJ/FLAM SINE Alu 3 101 -211 245 174 0 0 chrY 18213934 18213980 -6499099 - MER1B DNA MER1_type -16 317 272 371 132 0 44 chrY 18214146 18214214 -6498865 - MER1B DNA MER1_type -64 275 211 942 224 76 22 chrY 18214405 18214682 -6498397 + AluJb SINE Alu 2 293 -9 414 0 0 0 chrY 18215158 18215204 -6497875 + (TG)n Simple_repeat Simple_repeat 2 47 0 21 82 0 0 chrY 18215233 18215282 -6497797 + AT_rich Low_complexity Low_complexity 1 49 0 1849 145 3 22 chrY 18216568 18216879 -6496200 + AluSc SINE Alu 2 306 -3 1870 133 7 3 chrY 18217357 18217659 -6495420 - AluSc SINE Alu -6 303 1 1657 176 0 10 chrY 18219676 18219977 -6493102 + AluSg SINE Alu 1 298 -12 21 36 0 0 chrY 18220526 18220554 -6492525 + AT_rich Low_complexity Low_complexity 1 28 0 812 264 25 29 chrY 18221453 18221695 -6491384 - AluJo SINE Alu -71 241 1 1614 241 150 17 chrY 18223157 18223816 -6489263 - L1MB5 LINE L1 -13 6161 5415 277 143 0 0 chrY 18223830 18223879 -6489200 + L1PA6 LINE L1 6106 6154 0 261 223 109 9 chrY 18223880 18224023 -6489056 - L1MB5 LINE L1 -746 5423 5254 445 203 20 60 chrY 18224183 18224367 -6488712 - L1M4 LINE L1 -583 5601 5415 275 106 0 0 chrY 18224381 18224428 -6488651 + L1PA6 LINE L1 6106 6152 -2 243 204 80 11 chrY 18224455 18224543 -6488536 - L1M4 LINE L1 -787 5397 5304 610 190 77 101 chrY 18224735 18224929 -6488150 - L1M4 LINE L1 -577 5601 5399 317 83 0 0 chrY 18224929 18224977 -6488102 + L1PA6 LINE L1 6106 6153 -1 610 190 77 101 chrY 18224977 18225119 -6487960 - L1M4 LINE L1 -779 5399 5255 482 191 7 50 chrY 18225320 18225461 -6487618 - L1M4 LINE L1 -625 5549 5415 263 143 0 0 chrY 18225475 18225524 -6487555 + L1PA6 LINE L1 6106 6154 0 274 219 67 9 chrY 18225525 18225630 -6487449 - L1M4 LINE L1 -755 5423 5313 546 203 49 54 chrY 18225824 18226152 -6486927 - L1M4 LINE L1 -583 5601 5254 1377 216 32 11 chrY 18228066 18228349 -6484730 - AluSg SINE Alu -11 289 1 1578 198 3 14 chrY 18228811 18229099 -6483980 + AluSx SINE Alu 3 287 -15 1385 226 7 45 chrY 18229165 18229475 -6483604 - AluJo SINE Alu -3 299 2 525 273 35 0 chrY 18229522 18229694 -6483385 - L1MA4 LINE L1 -124 6176 5999 281 154 17 0 chrY 18229696 18229757 -6483322 + L1MA4 LINE L1 6223 6287 -15 231 188 0 0 chrY 18229769 18229817 -6483262 + CT-rich Low_complexity Low_complexity 3 50 0 1343 223 3 7 chrY 18229846 18230138 -6482941 - AluSx SINE Alu -17 295 5 865 215 5 0 chrY 18230178 18230364 -6482715 - AluSg/x SINE Alu -1 311 125 303 279 71 36 chrY 18230863 18231003 -6482076 - MLT1F LTR MaLR -28 514 370 1794 163 0 0 chrY 18231473 18231756 -6481323 - AluSq SINE Alu -30 283 1 1582 173 14 3 chrY 18232053 18232336 -6480743 + AluSx SINE Alu 1 286 -26 548 222 0 0 chrY 18237352 18237451 -6475628 + AluJ/FLAM SINE Alu 3 101 -211 263 174 0 0 chrY 18237470 18237516 -6475563 - MER1B DNA MER1_type -16 317 272 401 132 0 44 chrY 18237682 18237750 -6475329 - MER1B DNA MER1_type -64 275 211 281 161 226 66 chrY 18237840 18237941 -6475138 + L1MA7 LINE L1 6103 6233 -58 1046 224 76 22 chrY 18237941 18238218 -6474861 + AluJb SINE Alu 2 293 -9 281 161 226 66 chrY 18238218 18238253 -6474826 + L1MA7 LINE L1 6233 6261 -30 414 0 0 0 chrY 18238694 18238740 -6474339 + (TG)n Simple_repeat Simple_repeat 2 47 0 21 82 0 0 chrY 18238769 18238818 -6474261 + AT_rich Low_complexity Low_complexity 1 49 0 1837 145 3 22 chrY 18240104 18240415 -6472664 + AluSc SINE Alu 2 306 -3 1882 133 7 3 chrY 18240893 18241195 -6471884 - AluSc SINE Alu -6 303 1 1637 176 0 10 chrY 18243212 18243513 -6469566 + AluSg SINE Alu 1 298 -12 21 36 0 0 chrY 18244062 18244090 -6468989 + AT_rich Low_complexity Low_complexity 1 28 0 901 266 25 29 chrY 18244989 18245230 -6467849 - AluJo SINE Alu -71 241 2 1239 257 48 6 chrY 18246693 18247024 -6466055 - L1MB5 LINE L1 -13 6161 5817 1026 206 88 74 chrY 18247080 18247366 -6465713 - L1MB5 LINE L1 -490 5690 5394 305 143 0 0 chrY 18247366 18247415 -6465664 + L1PA6 LINE L1 6106 6154 0 1026 206 88 74 chrY 18247415 18247559 -6465520 - L1MB5 LINE L1 -786 5394 5254 597 204 80 112 chrY 18247719 18247917 -6465162 - L1M4 LINE L1 -577 5601 5404 304 106 0 0 chrY 18247917 18247964 -6465115 + L1PA6 LINE L1 6106 6152 -2 597 204 80 112 chrY 18247964 18248111 -6464968 - L1M4 LINE L1 -774 5404 5254 740 191 119 90 chrY 18248271 18248465 -6464614 - L1M4 LINE L1 -577 5601 5391 343 83 0 0 chrY 18248465 18248513 -6464566 + L1PA6 LINE L1 6106 6153 -1 740 191 119 90 chrY 18248513 18248653 -6464426 - L1M4 LINE L1 -787 5391 5257 533 208 23 45 chrY 18248799 18248997 -6464082 - L1MC/D LINE L1 -587 5597 5414 289 143 0 0 chrY 18249011 18249060 -6464019 + L1PA6 LINE L1 6106 6154 0 324 219 61 26 chrY 18249061 18249175 -6463904 - L1MC/D LINE L1 -755 5423 5306 593 213 83 53 chrY 18249360 18249688 -6463391 - L1M4 LINE L1 -577 5601 5254 1377 216 32 11 chrY 18251603 18251886 -6461193 - AluSg SINE Alu -11 289 1 1578 198 3 14 chrY 18252348 18252636 -6460443 + AluSx SINE Alu 3 287 -15 1385 226 7 45 chrY 18252702 18253012 -6460067 - AluJo SINE Alu -3 299 2 525 273 35 0 chrY 18253059 18253231 -6459848 - L1MA4 LINE L1 -124 6176 5999 281 154 17 0 chrY 18253233 18253294 -6459785 + L1MA4 LINE L1 6223 6287 -15 231 188 0 0 chrY 18253306 18253354 -6459725 + CT-rich Low_complexity Low_complexity 3 50 0 1337 243 28 3 chrY 18253383 18253538 -6459541 - AluSx SINE Alu -7 295 128 366 23 0 0 chrY 18253538 18253581 -6459498 + (TG)n Simple_repeat Simple_repeat 2 44 0 1337 243 28 3 chrY 18253581 18253713 -6459366 - AluSx SINE Alu -174 128 1 898 243 5 0 chrY 18253749 18253963 -6459116 - AluSg/x SINE Alu -1 309 95 297 273 79 36 chrY 18254431 18254570 -6458509 - MLT1F LTR MaLR -28 514 370 806 78 0 0 chrY 18259822 18259925 -6453154 - L1P3 LINE L1 -622 5532 5430 2377 89 9 3 chrY 18259925 18260239 -6452840 + L1PA6 LINE L1 5837 6154 0 444 183 0 0 chrY 18261328 18261421 -6451658 + GA-rich Low_complexity Low_complexity 1 93 0 21 0 0 0 chrY 18261659 18261680 -6451399 + AT_rich Low_complexity Low_complexity 1 21 0 333 0 0 0 chrY 18263337 18263374 -6449705 + (TA)n Simple_repeat Simple_repeat 1 37 0 511 300 30 4 chrY 18263560 18263790 -6449289 + L1M4 LINE L1 4064 4299 -1847 30 45 0 0 chrY 18264300 18264344 -6448735 + AT_rich Low_complexity Low_complexity 1 44 0 1926 142 10 0 chrY 18264356 18264645 -6448434 - AluY SINE Alu -19 292 1 21 0 0 0 chrY 18264731 18264752 -6448327 + AT_rich Low_complexity Low_complexity 1 21 0 748 168 147 19 chrY 18265014 18265205 -6447874 + AluJb SINE Alu 19 289 -23 1859 162 0 0 chrY 18265267 18265551 -6447528 + AluSx SINE Alu 1 284 -28 532 256 47 23 chrY 18265822 18265994 -6447085 + AluJo SINE Alu 121 296 -16 698 264 57 7 chrY 18266001 18266297 -6446782 + L1M4 LINE L1 4403 4713 -1433 262 24 24 73 chrY 18266427 18266468 -6446611 - MER9 LTR ERVK -472 39 1 11211 108 20 28 chrY 18266470 18268546 -6444533 - HERVK9 LTR ERVK -3 8033 3954 15537 90 47 43 chrY 18268648 18270715 -6442364 - HERVK9 LTR ERVK -3340 2576 402 180 330 21 21 chrY 18270715 18270812 -6442267 - L3 LINE CR1 -28 1549 1453 15537 90 47 43 chrY 18270812 18271037 -6442042 - HERVK9 LTR ERVK -5514 402 179 396 0 0 0 chrY 18271362 18271406 -6441673 + (TA)n Simple_repeat Simple_repeat 2 45 0 21 0 0 0 chrY 18273063 18273084 -6439995 + AT_rich Low_complexity Low_complexity 1 21 0 444 183 0 0 chrY 18273322 18273415 -6439664 + CT-rich Low_complexity Low_complexity 1 93 0 2338 89 13 3 chrY 18274504 18274819 -6438260 - L1PA6 LINE L1 0 6154 5837 793 79 0 0 chrY 18274819 18274920 -6438159 + L1P3 LINE L1 5432 5532 -622 234 302 48 63 chrY 18279876 18280065 -6433014 + MLT1F LTR MaLR 102 287 -303 293 273 79 36 chrY 18280173 18280312 -6432767 + MLT1F LTR MaLR 370 514 -28 897 243 5 0 chrY 18280780 18280994 -6432085 + AluSg/x SINE Alu 95 309 -1 1228 239 28 3 chrY 18281034 18281162 -6431917 + AluSx SINE Alu 5 128 -174 366 23 0 0 chrY 18281162 18281205 -6431874 + (CA)n Simple_repeat Simple_repeat 2 44 0 1228 239 28 3 chrY 18281205 18281360 -6431719 + AluSx SINE Alu 128 295 -7 231 188 0 0 chrY 18281389 18281437 -6431642 + GA-rich Low_complexity Low_complexity 3 50 0 275 154 17 0 chrY 18281449 18281510 -6431569 - L1MA4 LINE L1 -15 6287 6223 515 273 35 0 chrY 18281512 18281684 -6431395 + L1MA4 LINE L1 5999 6176 -124 1205 229 7 45 chrY 18281731 18282041 -6431038 + AluJo SINE Alu 2 299 -13 1461 194 3 14 chrY 18282107 18282391 -6430688 - AluSx SINE Alu -25 287 7 1247 207 33 11 chrY 18282865 18283140 -6429939 + AluSg SINE Alu 9 289 -21 579 213 83 53 chrY 18285055 18285383 -6427696 + L1M4 LINE L1 5254 5601 -577 313 219 61 26 chrY 18285568 18285682 -6427397 + L1M4 LINE L1 5306 5423 -755 283 143 0 0 chrY 18285683 18285732 -6427347 - L1PA6 LINE L1 0 6154 6106 525 218 23 45 chrY 18285746 18285942 -6427137 + L1M4 LINE L1 5415 5617 -553 716 191 119 90 chrY 18286090 18286230 -6426849 + L1M4 LINE L1 5257 5391 -787 333 83 0 0 chrY 18286230 18286278 -6426801 - L1PA6 LINE L1 -1 6153 6106 716 191 119 90 chrY 18286278 18286472 -6426607 + L1M4 LINE L1 5391 5601 -577 291 243 109 9 chrY 18286632 18286775 -6426304 + L1M3 LINE L1 5254 5423 -746 297 122 0 0 chrY 18286777 18286826 -6426253 - L1PA6 LINE L1 0 6154 6106 478 221 15 54 chrY 18286840 18287024 -6426055 + L1M3 LINE L1 5415 5601 -573 306 210 196 7 chrY 18287184 18287327 -6425752 + L1MB5 LINE L1 5254 5423 -761 298 143 0 0 chrY 18287328 18287377 -6425702 - L1PA6 LINE L1 0 6154 6106 1875 240 150 17 chrY 18287391 18288050 -6425029 + L1MB5 LINE L1 5415 6161 -13 813 262 25 30 chrY 18289513 18289750 -6423329 + AluJo SINE Alu 2 237 -75 21 36 0 0 chrY 18290653 18290681 -6422398 + AT_rich Low_complexity Low_complexity 1 28 0 1674 176 0 10 chrY 18291230 18291531 -6421548 - AluSg SINE Alu -12 298 1 1658 157 30 0 chrY 18293244 18293512 -6419567 + AluSq SINE Alu 8 283 -30 288 311 125 29 chrY 18294224 18294504 -6418575 + L2 LINE L2 2196 2502 -812 703 182 42 0 chrY 18295800 18295943 -6417136 - MIR SINE MIR -93 169 21 341 354 57 0 chrY 18295967 18296125 -6416954 + L1ME LINE L1 5489 5655 -529 1422 193 0 32 chrY 18296149 18296429 -6416650 + AluJo SINE Alu 36 306 -6 2557 236 58 11 chrY 18296542 18297322 -6415757 - L1MEc LINE L1 -2280 3935 3120 402 174 14 0 chrY 18297331 18297400 -6415679 - FLAM SINE Alu -22 121 52 878 247 98 74 chrY 18297467 18298046 -6415033 - L1MEc LINE L1 -4396 2000 1408 584 243 81 23 chrY 18298055 18298228 -6414851 - MLT1J1 LTR MaLR -261 185 3 1315 115 58 24 chrY 18298530 18298738 -6414341 - AluSg SINE Alu -95 215 1 257 196 65 22 chrY 18299094 18299186 -6413893 + L1ME LINE L1 5756 5851 -313 262 213 126 63 chrY 18299257 18299384 -6413695 + LTR50 LTR ERVL 23 157 -638 431 305 122 27 chrY 18299562 18299857 -6413222 + LTR50 LTR ERVL 442 764 -31 378 0 0 0 chrY 18300257 18300299 -6412780 + (TA)n Simple_repeat Simple_repeat 1 42 0 364 229 66 10 chrY 18300578 18300691 -6412388 + AluJo SINE Alu 11 116 -186 186 43 0 0 chrY 18300691 18300714 -6412365 + (TTAA)n Simple_repeat Simple_repeat 1 23 0 364 229 66 10 chrY 18300714 18300827 -6412252 + AluJo SINE Alu 116 282 -20 263 262 119 0 chrY 18301774 18301858 -6411221 + LTR33A LTR ERVL 92 185 -338 365 217 0 22 chrY 18302031 18302123 -6410956 + LTR1 LTR ERV1 1 90 -695 * 623 173 10 0 chrY 18302122 18302226 -6410853 + LTR1 LTR ERV1 577 681 -104 479 292 56 49 chrY 18303150 18303540 -6409539 + SST1 Satellite centromeric 132 524 -1039 392 319 54 56 chrY 18304089 18304481 -6408598 + SST1 Satellite centromeric 1148 1538 -25 388 277 75 56 chrY 18305626 18305947 -6407132 + SST1 Satellite centromeric 132 458 -1105 250 290 89 86 chrY 18306634 18307006 -6406073 + SST1 Satellite centromeric 1163 1535 -28 261 0 0 0 chrY 18307074 18307103 -6405976 + (TG)n Simple_repeat Simple_repeat 2 30 0 438 285 53 51 chrY 18307884 18308277 -6404802 + SST1 Satellite centromeric 207 600 -963 1912 207 27 18 chrY 18309847 18310292 -6402787 + LTR2 LTR ERV1 1 449 0 2859 165 32 31 chrY 18310292 18311182 -6401897 + Harlequin LTR ERV1 1 969 -6500 4275 207 7 10 chrY 18311197 18312014 -6401065 + Harlequin LTR ERV1 1559 2373 -5440 20270 170 3 8 chrY 18312021 18315327 -6397752 + Harlequin LTR ERV1 2507 5797 -2016 9182 214 26 21 chrY 18315438 18317447 -6395632 + Harlequin LTR ERV1 4877 6895 -1 1679 236 25 25 chrY 18317447 18317896 -6395183 + LTR2 LTR ERV1 1 449 0 264 309 67 56 chrY 18318254 18318629 -6394450 + SST1 Satellite centromeric 29 407 -1156 4133 103 3 23 chrY 18318638 18318901 -6394178 + LTR14C LTR ERVK 1 268 -319 1904 139 42 0 chrY 18318901 18319189 -6393890 - AluY SINE Alu -11 300 1 4133 103 3 23 chrY 18319189 18319524 -6393555 + LTR14C LTR ERVK 268 587 0 12197 122 14 4 chrY 18319524 18321284 -6391795 + HERVK14C LTR ERVK 1 1777 -5640 4442 123 15 5 chrY 18321261 18321929 -6391150 + HERVK14C LTR ERVK 1880 2554 -4863 * 15105 109 7 9 chrY 18321910 18324044 -6389035 + HERVK14C LTR ERVK 5289 7417 0 4237 114 2 0 chrY 18324044 18324630 -6388449 + LTR14C LTR ERVK 1 587 0 203 222 12 25 chrY 18325681 18325762 -6387317 + (TG)n Simple_repeat Simple_repeat 1 80 0 207 0 0 0 chrY 18326252 18326275 -6386804 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 490 309 50 37 chrY 18326814 18327193 -6385886 + SST1 Satellite centromeric 138 521 -1042 186 143 0 0 chrY 18328175 18328210 -6384869 + (TG)n Simple_repeat Simple_repeat 2 36 0 250 349 44 31 chrY 18329331 18329721 -6383358 + SST1 Satellite centromeric 207 601 -962 210 136 0 0 chrY 18330644 18330688 -6382391 + (TG)n Simple_repeat Simple_repeat 1 44 0 260 329 52 48 chrY 18331952 18332204 -6380875 + SST1 Satellite centromeric 349 601 -962 227 43 0 87 chrY 18333056 18333102 -6379977 + (TG)n Simple_repeat Simple_repeat 1 42 0 257 287 85 77 chrY 18334229 18334605 -6378474 + SST1 Satellite centromeric 223 601 -962 228 293 0 0 chrY 18335098 18335156 -6377923 + SST1 Satellite centromeric 1162 1219 -344 244 282 109 26 chrY 18335322 18335478 -6377601 + SST1 Satellite centromeric 1374 1542 -21 216 0 0 0 chrY 18335813 18335837 -6377242 + (A)n Simple_repeat Simple_repeat 1 24 0 240 111 0 0 chrY 18335888 18335924 -6377155 + (CA)n Simple_repeat Simple_repeat 1 36 0 293 296 77 72 chrY 18335969 18336358 -6376721 - SST1 Satellite centromeric -25 1538 1148 269 319 64 48 chrY 18336836 18337209 -6375870 - SST1 Satellite centromeric -962 601 223 734 22 11 0 chrY 18338291 18338383 -6374696 + (GAA)n Simple_repeat Simple_repeat 2 94 0 269 127 0 56 chrY 18338437 18338508 -6374571 + (CA)n Simple_repeat Simple_repeat 2 68 0 504 283 76 42 chrY 18339414 18339796 -6373283 - SST1 Satellite centromeric -962 601 207 225 209 15 15 chrY 18340907 18340974 -6372105 + (CA)n Simple_repeat Simple_repeat 2 68 0 226 325 0 0 chrY 18341285 18341362 -6371717 - SST1 Satellite centromeric -324 1239 1163 342 335 57 42 chrY 18341843 18342408 -6370671 - SST1 Satellite centromeric -962 601 29 296 94 19 0 chrY 18343224 18343277 -6369802 + (CA)n Simple_repeat Simple_repeat 1 54 0 377 315 70 62 chrY 18344204 18344772 -6368307 - SST1 Satellite centromeric -962 601 29 241 296 74 0 chrY 18345484 18345565 -6367514 + L2 LINE L2 1832 1918 -1396 352 261 51 36 chrY 18345584 18345722 -6367357 - MER93b LTR ERV1 -120 253 114 223 295 16 0 chrY 18346335 18346396 -6366683 - L2 LINE L2 -6 3266 3205 22 56 0 0 chrY 18347069 18347105 -6365974 + AT_rich Low_complexity Low_complexity 1 36 0 22 70 0 0 chrY 18347757 18347800 -6365279 + AT_rich Low_complexity Low_complexity 1 43 0 381 315 129 16 chrY 18348163 18348534 -6364545 + L2 LINE L2 1592 2004 -1310 354 328 133 53 chrY 18348504 18348901 -6364178 + L2 LINE L2 2879 3307 -6 * 205 328 94 16 chrY 18349365 18349493 -6363586 + L2 LINE L2 3172 3309 -4 447 68 0 0 chrY 18350023 18350082 -6362997 + (CA)n Simple_repeat Simple_repeat 2 60 0 1266 185 7 70 chrY 18350084 18350382 -6362697 - AluJb SINE Alu -29 283 5 24 0 0 0 chrY 18350397 18350421 -6362658 + AT_rich Low_complexity Low_complexity 1 24 0 1529 194 43 4 chrY 18350421 18350699 -6362380 + AluSg SINE Alu 1 289 -21 459 302 6 39 chrY 18350799 18350981 -6362098 - MER5B DNA MER1_type -1 177 2 1832 160 3 0 chrY 18351341 18351641 -6361438 - AluSq SINE Alu -12 301 1 237 321 12 0 chrY 18351733 18351817 -6361262 + L2 LINE L2 2917 3001 -271 1877 176 0 0 chrY 18352113 18352419 -6360660 - AluY SINE Alu -1 310 5 1606 296 45 35 chrY 18352797 18353086 -6359993 + HAL1 LINE L1 1217 1502 -1005 1774 140 7 65 chrY 18353086 18353394 -6359685 + AluSp SINE Alu 1 290 -23 1606 296 45 35 chrY 18353394 18353867 -6359212 + HAL1 LINE L1 1502 1986 -521 695 265 102 101 chrY 18353960 18354352 -6358727 + L1M4 LINE L1 2905 3300 -2846 4598 22 0 0 chrY 18354352 18354852 -6358227 + L1PA2 LINE L1 5656 6155 0 695 265 102 101 chrY 18354852 18355085 -6357994 + L1M4 LINE L1 3300 3531 -2615 231 246 52 52 chrY 18355132 18355266 -6357813 + L1P LINE L1 3603 3736 -2410 2342 164 6 0 chrY 18355740 18356093 -6356986 + THE1A LTR MaLR 1 355 0 1937 142 0 19 chrY 18356201 18356512 -6356567 - AluSx SINE Alu -7 305 1 264 250 49 83 chrY 18356512 18356544 -6356535 - L2 LINE L2 -855 2459 2427 212 0 36 0 chrY 18356544 18356572 -6356507 + (TTTTA)n Simple_repeat Simple_repeat 5 33 0 1512 207 7 0 chrY 18356581 18356852 -6356227 - AluSx SINE Alu -39 273 1 264 250 49 83 chrY 18356852 18356953 -6356126 - L2 LINE L2 -895 2419 2321 21 0 0 0 chrY 18358791 18358812 -6354267 + AT_rich Low_complexity Low_complexity 1 21 0 1854 261 84 24 chrY 18360172 18361057 -6352022 + L1M1 LINE L1 4541 5470 -743 271 178 59 69 chrY 18361177 18361278 -6351801 - MER31-int LTR ERV1 -1214 3722 3623 2575 150 26 100 chrY 18361288 18361941 -6351138 - MER4B LTR ERV1 0 779 4 929 240 60 25 chrY 18361941 18362234 -6350845 - MER31-int LTR ERV1 -1314 5267 3342 735 218 53 69 chrY 18362347 18362650 -6350429 - MER31-int LTR ERV1 -1700 3236 2939 3631 133 4 4 chrY 18362680 18363191 -6349888 - MER9 LTR ERVK 0 511 1 13848 104 11 23 chrY 18363193 18365521 -6347558 - HERVK9 LTR ERVK -3 8033 3711 8059 91 2 4 chrY 18365521 18366592 -6346487 - HERVK9 LTR ERVK -3130 2786 1718 4687 128 6 10 chrY 18366631 18367334 -6345745 - MER11C LTR ERVK -14 1057 358 2123 248 79 40 chrY 18367590 18368559 -6344520 - L1M LINE L1 -753 5393 4403 579 267 64 20 chrY 18368566 18368768 -6344311 - AluJo SINE Alu -16 296 86 1989 137 0 0 chrY 18369000 18369284 -6343795 - AluSx SINE Alu -28 284 1 691 166 145 34 chrY 18369345 18369539 -6343540 - AluJb SINE Alu -23 289 19 2117 117 0 3 chrY 18369908 18370199 -6342880 + AluY SINE Alu 1 290 -21 30 45 0 0 chrY 18370207 18370251 -6342828 + AT_rich Low_complexity Low_complexity 1 44 0 528 348 52 12 chrY 18370771 18371371 -6341708 - L1M4 LINE L1 -1847 4299 3676 440 176 18 29 chrY 18371560 18371730 -6341349 + (TTAGGG)n Simple_repeat Simple_repeat 2 169 0 408 194 0 38 chrY 18371790 18371976 -6341103 + (TTAGGG)n Simple_repeat Simple_repeat 1 179 0 347 152 11 45 chrY 18371994 18372172 -6340907 + (TTAGGG)n Simple_repeat Simple_repeat 4 175 0 281 165 0 63 chrY 18372200 18372358 -6340721 + (TTAGGG)n Simple_repeat Simple_repeat 3 150 0 309 224 3 41 chrY 18372497 18372845 -6340234 + (TTAGGG)n Simple_repeat Simple_repeat 1 334 0 370 226 22 39 chrY 18373026 18373207 -6339872 + (TTAGGG)n Simple_repeat Simple_repeat 3 180 0 271 250 12 24 chrY 18373242 18373584 -6339495 + (TTAGGG)n Simple_repeat Simple_repeat 1 338 0 222 128 0 0 chrY 18373586 18373625 -6339454 + (TTGGGG)n Simple_repeat Simple_repeat 4 42 0 370 213 9 38 chrY 18373686 18374009 -6339070 + (TTAGGG)n Simple_repeat Simple_repeat 1 313 0 621 306 98 4 chrY 18374013 18374278 -6338801 + MER52A LTR ERV1 807 1096 -659 * 2769 314 13 23 chrY 18374246 18375087 -6337992 + MER52A LTR ERV1 923 1755 0 619 248 8 0 chrY 18375096 18375225 -6337854 + MER21B LTR ERV1 247 376 -487 735 257 27 0 chrY 18377954 18378141 -6334938 - L1M4c LINE L1 -4179 2205 2014 1993 125 9 31 chrY 18378143 18378463 -6334616 + AluSp SINE Alu 1 313 0 1683 141 29 54 chrY 18378493 18378806 -6334273 + AluY SINE Alu 1 305 -6 2390 87 0 3 chrY 18378807 18379117 -6333962 + AluY SINE Alu 1 309 -2 3475 266 101 29 chrY 18379145 18380902 -6332177 - L1M4c LINE L1 -4475 1909 25 458 302 116 46 chrY 18380929 18381403 -6331676 - L1M4c LINE L1 -3888 2496 1990 26 0 0 0 chrY 18381954 18381980 -6331099 + AT_rich Low_complexity Low_complexity 1 26 0 231 304 54 83 chrY 18382471 18382639 -6330440 - L2 LINE L2 -386 2928 2766 244 263 0 0 chrY 18382673 18382730 -6330349 + MER20 DNA MER1_type 90 146 -73 1785 148 49 47 chrY 18383704 18384031 -6329048 - MLT2A1 LTR ERVL -57 387 57 2300 26 7 4 chrY 18384031 18384302 -6328777 + AluY SINE Alu 34 305 -6 1785 148 49 47 chrY 18384302 18384360 -6328719 - MLT2A1 LTR ERVL -387 57 1 4146 139 14 29 chrY 18384362 18384627 -6328452 - HERVL-A1 LTR ERVL -2 5652 5385 2087 121 0 14 chrY 18384627 18384924 -6328155 - AluY SINE Alu -18 293 1 4146 139 14 29 chrY 18384924 18385421 -6327658 - HERVL-A1 LTR ERVL -269 5385 4901 15683 147 30 2 chrY 18385433 18388024 -6325055 - HERVL-A1 LTR ERVL -1080 4574 1911 3447 154 7 3 chrY 18388013 18388622 -6324457 - HERVL-A1 LTR ERVL -4168 1486 876 * 2315 171 43 31 chrY 18388622 18389108 -6323971 + LTR22B LTR ERVK 1 492 0 2439 207 2 6 chrY 18389116 18389603 -6323476 + HERVK22 LTR ERVK 8 492 -6345 21922 141 8 14 chrY 18389610 18394472 -6318607 + HERVK22 LTR ERVK 911 5801 -1036 2043 118 0 4 chrY 18394472 18394752 -6318327 + AluY SINE Alu 1 279 -32 225 0 0 0 chrY 18394752 18394777 -6318302 + (TAA)n Simple_repeat Simple_repeat 1 25 0 21922 141 8 14 chrY 18394777 18394830 -6318249 + HERVK22 LTR ERVK 5799 5886 -951 4802 153 3 21 chrY 18394863 18394899 -6318180 + HERVK22 LTR ERVK 5999 6034 -803 7810 90 8 4 chrY 18394899 18395965 -6317114 + MER11C LTR ERVK 1 1071 0 4802 153 3 21 chrY 18395965 18396782 -6316297 + HERVK22 LTR ERVK 6034 6837 0 2131 158 23 66 chrY 18396797 18397283 -6315796 + LTR22B LTR ERVK 28 492 0 1009 127 12 0 chrY 18397283 18397449 -6315630 - HERVL-A1 LTR ERVL -4773 881 714 2222 283 45 0 chrY 18397449 18398021 -6315058 + MER52A LTR ERV1 1156 1753 -2 256 130 87 76 chrY 18398289 18398381 -6314698 - MER20 DNA MER1_type 0 219 127 1616 167 7 35 chrY 18398570 18398858 -6314221 + AluSq SINE Alu 11 290 -23 3146 212 28 18 chrY 18398907 18399667 -6313412 + L1PA10 LINE L1 5401 6167 -1 854 252 138 4 chrY 18399810 18400064 -6313015 - AluSg SINE Alu -16 294 7 31 58 0 0 chrY 18400166 18400218 -6312861 + AT_rich Low_complexity Low_complexity 1 52 0 23 0 0 0 chrY 18400893 18400916 -6312163 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chrY 18401374 18401402 -6311677 + AT_rich Low_complexity Low_complexity 1 28 0 366 229 0 0 chrY 18401557 18401653 -6311426 + (TA)n Simple_repeat Simple_repeat 2 97 0 231 176 11 22 chrY 18401686 18401764 -6311315 + (TA)n Simple_repeat Simple_repeat 2 80 -11 2519 69 0 0 chrY 18401764 18402070 -6311009 - AluY SINE Alu -5 306 1 231 176 11 22 chrY 18402070 18402082 -6310997 + (TA)n Simple_repeat Simple_repeat 80 91 0 2044 106 31 0 chrY 18402181 18402474 -6310605 + AluY SINE Alu 1 302 -9 207 186 0 0 chrY 18402474 18402517 -6310562 + (TA)n Simple_repeat Simple_repeat 1 43 0 26 0 0 0 chrY 18403564 18403590 -6309489 + AT_rich Low_complexity Low_complexity 1 26 0 2004 116 0 48 chrY 18404113 18404423 -6308656 + AluY SINE Alu 2 296 -15 22 35 0 0 chrY 18406087 18406116 -6306963 + AT_rich Low_complexity Low_complexity 1 29 0 312 250 89 18 chrY 18406163 18406275 -6306804 - L1MC5 LINE L1 -189 7772 7653 488 232 0 0 chrY 18406281 18406376 -6306703 + AluJb SINE Alu 87 181 -131 24 85 0 0 chrY 18406620 18406679 -6306400 + AT_rich Low_complexity Low_complexity 1 59 0 786 288 107 4 chrY 18406774 18407017 -6306062 + AluJb SINE Alu 4 271 -41 2252 217 12 12 chrY 18407695 18407949 -6305130 - MER1A DNA MER1_type -2190 512 256 2860 22 0 0 chrY 18407949 18408266 -6304813 - AluYb8 SINE Alu -1 317 1 2252 217 12 12 chrY 18408266 18408505 -6304574 - MER1A DNA MER1_type -2445 257 19 376 210 0 0 chrY 18408509 18408571 -6304508 + FRAM SINE Alu 63 124 -42 188 67 33 0 chrY 18408572 18408602 -6304477 + (CAAA)n Simple_repeat Simple_repeat 3 33 0 1910 128 3 3 chrY 18409543 18409831 -6303248 - AluY SINE Alu -23 288 1 1430 154 0 0 chrY 18409898 18410112 -6302967 + AluSq SINE Alu 81 294 -19 233 272 62 0 chrY 18410116 18410197 -6302882 + MIR SINE MIR 177 262 0 575 267 77 5 chrY 18410460 18410655 -6302424 - MER2 DNA MER2_type -135 210 2 1634 169 14 11 chrY 18410775 18411059 -6302020 - AluSc SINE Alu -22 287 3 2081 117 0 3 chrY 18411344 18411650 -6301429 - AluY SINE Alu 0 305 1 23 0 0 0 chrY 18412301 18412324 -6300755 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chrY 18412674 18412702 -6300377 + AT_rich Low_complexity Low_complexity 1 28 0 336 338 7 14 chrY 18412906 18413048 -6300031 + AluJb SINE Alu 1 141 -161 882 229 17 86 chrY 18413052 18413344 -6299735 + AluJo SINE Alu 11 282 -30 1437 177 100 26 chrY 18413588 18413927 -6299152 - THE1B LTR MaLR 0 364 1 2732 164 80 0 chrY 18413927 18414428 -6298651 - THE1B-int LTR MaLR 0 1580 1040 3653 129 59 68 chrY 18414429 18415816 -6297263 - pTR5 LTR ERV1 0 2438 66 328 290 180 11 chrY 18416398 18416581 -6296498 + L1MC4a LINE L1 5746 5959 -1849 21 0 0 0 chrY 18416925 18416946 -6296133 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chrY 18417391 18417418 -6295661 + AT_rich Low_complexity Low_complexity 1 27 0 22 35 0 0 chrY 18418170 18418199 -6294880 + AT_rich Low_complexity Low_complexity 1 29 0 926 269 94 4 chrY 18418239 18418514 -6294565 + AluSx SINE Alu 2 301 -1 867 224 0 0 chrY 18418605 18418766 -6294313 + AluSc SINE Alu 135 295 -14 3355 201 23 26 chrY 18418833 18419613 -6293466 - L1PA10 LINE L1 -3 6165 5388 282 296 32 16 chrY 18419936 18420061 -6293018 + MER20 DNA MER1_type 93 219 0 344 136 0 45 chrY 18420200 18420256 -6292823 + AluS SINE Alu 221 278 -22 240 86 0 0 chrY 18420256 18420291 -6292788 + (CA)n Simple_repeat Simple_repeat 2 36 0 432 37 0 0 chrY 18420291 18420345 -6292734 + (TCTA)n Simple_repeat Simple_repeat 4 57 0 3272 271 23 8 chrY 18420430 18421336 -6291743 - MER52A LTR ERV1 0 1755 905 265 303 101 20 chrY 18421339 18421438 -6291641 - MER52A LTR ERV1 -717 1038 932 * 519 249 70 52 chrY 18421406 18421619 -6291460 - MER52A LTR ERV1 -714 1041 825 257 191 36 12 chrY 18421625 18421709 -6291370 + (TTAAA)n Simple_repeat Simple_repeat 4 89 0 328 256 0 0 chrY 18421758 18421840 -6291239 - MER52A LTR ERV1 -994 761 680 2111 138 87 14 chrY 18421840 18422254 -6290825 + MLT2A1 LTR ERVL 1 444 0 10553 154 10 10 chrY 18422254 18424094 -6288985 + HERVL-A1 LTR ERVL 1 1840 -3814 * 22225 139 8 11 chrY 18424089 18427767 -6285312 + HERVL-A1 LTR ERVL 1988 5653 -1 1811 170 57 16 chrY 18427768 18428138 -6284941 + MLT2A1 LTR ERVL 1 385 -59 201 74 0 0 chrY 18428162 18428189 -6284890 + (TG)n Simple_repeat Simple_repeat 2 28 0 198 171 0 0 chrY 18428194 18428235 -6284844 + (TA)n Simple_repeat Simple_repeat 2 42 0 180 77 0 0 chrY 18428719 18428745 -6284334 + (TAA)n Simple_repeat Simple_repeat 2 27 0 270 245 0 0 chrY 18430025 18430078 -6283001 - MER20 DNA MER1_type -74 145 93 351 349 60 39 chrY 18430112 18430367 -6282712 + L2 LINE L2 2763 3033 -280 284 346 39 26 chrY 18431167 18431320 -6281759 + L1M4 LINE L1 615 769 -5773 964 290 139 12 chrY 18431424 18432308 -6280771 + L1M4 LINE L1 989 1984 -4662 25 51 0 0 chrY 18432530 18432569 -6280510 + AT_rich Low_complexity Low_complexity 1 39 0 364 306 60 25 chrY 18432590 18432789 -6280290 + L1M4 LINE L1 2557 2762 -3884 4302 264 105 25 chrY 18432793 18434829 -6278250 + L1M4c LINE L1 6 2205 -4179 24 0 0 0 chrY 18437172 18437196 -6275883 + AT_rich Low_complexity Low_complexity 1 24 0 614 279 7 0 chrY 18437718 18437858 -6275221 - MER21B LTR ERV1 -487 376 236 2336 294 105 13 chrY 18437875 18439381 -6273698 - MER52A LTR ERV1 -188 1567 4 585 284 147 0 chrY 18439383 18439594 -6273485 - MER21B LTR ERV1 -621 242 1 271 230 149 0 chrY 18439722 18439809 -6273270 + Tigger4(Zombi) DNA MER2_type 1 100 -2631 1437 257 68 63 chrY 18439883 18440558 -6272521 + LTR25 LTR ERV1 32 743 -51 290 185 0 0 chrY 18440550 18440604 -6272475 + LTR25 LTR ERV1 481 534 -260 * 1319 253 48 0 chrY 18440605 18440961 -6272118 + LTR25 LTR ERV1 422 794 0 1729 314 13 2 chrY 18440988 18441537 -6271542 - HUERS-P3 LTR ERV1 -4300 2696 2512 926 255 114 20 chrY 18441656 18441997 -6271082 + LTR25 LTR ERV1 421 793 -1 7528 265 35 46 chrY 18442018 18443146 -6269933 + LTR25-int LTR ERV1 3 1142 -5854 1868 160 3 0 chrY 18443146 18443428 -6269651 - AluSg SINE Alu -27 283 1 7528 265 35 46 chrY 18443428 18444986 -6268093 + LTR25-int LTR ERV1 1142 2660 -4336 3495 318 32 9 chrY 18445030 18445826 -6267253 - HUERS-P3 LTR ERV1 -5885 3034 2197 189 0 0 0 chrY 18445826 18445847 -6267232 + (CAG)n Simple_repeat Simple_repeat 1 21 0 3495 318 32 9 chrY 18445847 18446291 -6266788 - HUERS-P3 LTR ERV1 -6722 2197 1765 815 270 70 42 chrY 18446279 18446386 -6266693 - HUERS-P3 LTR ERV1 -5121 1875 1773 * 312 83 0 0 chrY 18446394 18446442 -6266637 + (TATATG)n Simple_repeat Simple_repeat 4 51 0 1265 204 93 11 chrY 18446442 18446702 -6266377 - AluSx SINE Alu -27 285 1 815 270 70 42 chrY 18446702 18446979 -6266100 - HUERS-P3 LTR ERV1 -5223 1773 1480 3155 251 50 42 chrY 18447034 18447496 -6265583 - HUERS-P3 LTR ERV1 -5629 1367 910 1801 174 10 3 chrY 18447496 18447807 -6265272 + AluSq SINE Alu 1 313 0 3155 251 50 42 chrY 18447807 18448451 -6264628 - HUERS-P3 LTR ERV1 -6086 910 252 2765 220 27 92 chrY 18448552 18449401 -6263678 - LTR25 LTR ERV1 0 794 1 2483 286 14 25 chrY 18449403 18450129 -6262950 + LTR25-int LTR ERV1 2691 3408 -5511 5486 287 26 13 chrY 18450129 18451594 -6261485 + LTR25-int LTR ERV1 3305 4788 -2303 3221 151 2 2 chrY 18451594 18452105 -6260974 + MER9 LTR ERVK 1 511 0 20840 89 1 2 chrY 18452105 18454893 -6258186 + HERVK9 LTR ERVK 1 2786 -3130 13671 105 5 1 chrY 18454893 18456809 -6256270 + HERVK9 LTR ERVK 3711 5634 -282 2209 98 5 2 chrY 18456850 18457153 -6255926 + HERVK9 LTR ERVK 4947 5913 -3 3220 126 12 8 chrY 18457155 18457664 -6255415 + MER9 LTR ERVK 1 511 0 2648 264 90 47 chrY 18457664 18458450 -6254629 + LTR25-int LTR ERV1 4783 5615 -1476 1728 162 0 44 chrY 18458450 18458747 -6254332 + AluSc SINE Alu 1 284 -25 2648 264 90 47 chrY 18458747 18458875 -6254204 + LTR25-int LTR ERV1 5615 5736 -1355 2680 234 16 43 chrY 18458894 18459242 -6253837 + LTR25-int LTR ERV1 3314 3670 -3326 1418 167 130 4 chrY 18459242 18459511 -6253568 - AluSp SINE Alu 0 303 1 2680 234 16 43 chrY 18459511 18460156 -6252923 + LTR25-int LTR ERV1 3670 6996 0 2424 283 42 48 chrY 18460236 18461175 -6251904 + HUERS-P3 LTR ERV1 1759 2691 -6228 215 200 0 17 chrY 18461301 18461361 -6251718 + (TA)n Simple_repeat Simple_repeat 2 60 0 267 114 0 0 chrY 18461362 18461406 -6251673 + (CA)n Simple_repeat Simple_repeat 1 44 0 2372 241 6 101 chrY 18461410 18462215 -6250864 - LTR25 LTR ERV1 -65 729 1 3899 221 47 44 chrY 18462215 18463250 -6249829 - LTR25-int LTR ERV1 0 6996 5965 1989 140 0 32 chrY 18463250 18463565 -6249514 - AluSq SINE Alu -8 305 1 3899 221 47 44 chrY 18463565 18464519 -6248560 - LTR25-int LTR ERV1 -1031 5965 2212 378 165 22 33 chrY 18464490 18464581 -6248498 - LTR25-int LTR ERV1 -2135 3811 3722 * 666 173 39 0 chrY 18464592 18464719 -6248360 - AluY SINE Alu -4 307 176 567 103 0 0 chrY 18464713 18464791 -6248288 - AluSc SINE Alu -226 83 6 * 3557 216 39 28 chrY 18464805 18465517 -6247562 - LTR25-int LTR ERV1 -2556 4649 3947 1521 158 116 0 chrY 18465517 18465776 -6247303 - AluSg1 SINE Alu -19 290 2 3557 216 39 28 chrY 18465776 18466009 -6247070 - LTR25-int LTR ERV1 -3258 3947 3718 252 0 0 0 chrY 18466009 18466037 -6247042 + (TG)n Simple_repeat Simple_repeat 2 29 0 1559 165 32 0 chrY 18466037 18466285 -6246794 - AluSx SINE Alu -27 285 30 3557 216 39 28 chrY 18466285 18466386 -6246693 - LTR25-int LTR ERV1 -3486 3719 1256 1880 229 25 121 chrY 18466393 18466677 -6246402 - LTR25 LTR ERV1 -186 608 423 213 39 0 0 chrY 18466677 18466703 -6246376 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1880 229 25 121 chrY 18466703 18467090 -6245989 - LTR25 LTR ERV1 -371 423 1 3161 298 22 35 chrY 18467090 18468494 -6244585 - LTR25-int LTR ERV1 -4270 2726 1914 505 277 38 13 chrY 18468489 18468695 -6244384 - LTR25-int LTR ERV1 -5198 1798 1511 * 1710 275 27 13 chrY 18468693 18469144 -6243935 + LTR25-int LTR ERV1 3216 3672 -3419 7873 284 30 17 chrY 18469151 18471453 -6241626 + LTR25-int LTR ERV1 4122 6421 -670 732 283 5 0 chrY 18471467 18471683 -6241396 + LTR25-int LTR ERV1 4971 5156 -430 4401 316 40 21 chrY 18471904 18473525 -6239554 + LTR25-int LTR ERV1 7214 8868 -51 1814 160 3 10 chrY 18473525 18473818 -6239261 - AluSg SINE Alu -19 291 1 4401 316 40 21 chrY 18473818 18473871 -6239208 + LTR25-int LTR ERV1 8868 8919 0 1481 230 88 92 chrY 18473924 18474000 -6239079 + LTR25 LTR ERV1 95 170 -399 222 37 0 0 chrY 18474000 18474027 -6239052 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1481 230 88 92 chrY 18474027 18474683 -6238396 + LTR25 LTR ERV1 170 565 -4 2734 278 32 30 chrY 18474688 18475731 -6237348 - LTR25-int LTR ERV1 -5145 1851 807 254 290 11 11 chrY 18475995 18476088 -6236991 - TAR1 Satellite telomeric -1706 405 313 348 24 0 0 chrY 18476094 18476135 -6236944 + (TG)n Simple_repeat Simple_repeat 2 42 0 642 263 76 24 chrY 18476156 18476751 -6236328 + L1MC/D LINE L1 4924 5544 -743 1423 161 27 0 chrY 18476827 18477088 -6235991 + MER34C LTR ERV1 1 268 -317 520 188 10 0 chrY 18477091 18477192 -6235887 - MLT2B3 LTR ERVL -452 102 1 1073 250 28 32 chrY 18477195 18477627 -6235452 + MER31-int LTR ERV1 1065 1494 -3442 314 258 65 0 chrY 18477928 18478021 -6235058 + MER31-int LTR ERV1 1924 2022 -2914 1672 134 0 0 chrY 18678243 18678481 -6034598 + AluSc SINE Alu 27 264 -45 24 0 0 0 chrY 18678863 18678887 -6034192 + AT_rich Low_complexity Low_complexity 1 24 0 520 97 0 0 chrY 18679105 18679167 -6033912 - Alu SINE Alu -233 78 17 25 95 0 0 chrY 18681337 18681411 -6031668 + AT_rich Low_complexity Low_complexity 1 74 0 204 200 0 0 chrY 18681416 18681461 -6031618 + (TA)n Simple_repeat Simple_repeat 2 46 0 756 236 34 46 chrY 18681964 18682201 -6030878 - AluJb SINE Alu -78 234 1 270 140 237 32 chrY 18682214 18682307 -6030772 - L1MA7 LINE L1 -80 6211 6100 1343 181 49 11 chrY 18682307 18682572 -6030507 + MER1B DNA MER1_type 1 275 -64 310 149 15 45 chrY 18682718 18682785 -6030294 + MER1B DNA MER1_type 256 320 -13 350 274 21 0 chrY 18682797 18682892 -6030187 - FLAM_C SINE Alu -24 109 13 2030 67 75 0 chrY 18683207 18683475 -6029604 - AluY SINE Alu -23 288 1 5222 135 16 8 chrY 18684264 18685101 -6027978 - L1MA2 LINE L1 -133 6171 5329 246 136 0 0 chrY 18685102 18685146 -6027933 + (TA)n Simple_repeat Simple_repeat 2 45 0 7009 48 16 0 chrY 18685146 18686015 -6027064 - L1PA4 LINE L1 -11 6144 5262 7895 56 7 5 chrY 18686015 18687031 -6026048 + L1PA4 LINE L1 4250 5267 -879 1504 188 28 0 chrY 18688461 18688743 -6024336 + AluSg SINE Alu 3 292 -18 2642 10 48 0 chrY 18689065 18689359 -6023720 + AluYb8 SINE Alu 1 308 -10 195 152 0 0 chrY 18689685 18689731 -6023348 + A-rich Low_complexity Low_complexity 3 48 0 281 296 158 25 chrY 18690895 18691135 -6021944 - L2 LINE L2 -847 2467 2196 1916 148 0 0 chrY 18691853 18692136 -6020943 - AluSq SINE Alu -30 283 1 1585 170 14 3 chrY 18692507 18692790 -6020289 + AluSx SINE Alu 1 286 -26 21 0 0 0 chrY 18692929 18692950 -6020129 + AT_rich Low_complexity Low_complexity 1 21 0 548 222 0 0 chrY 18697818 18697917 -6015162 + AluJ/FLAM SINE Alu 3 101 -211 273 203 0 31 chrY 18697936 18698000 -6015079 - MER1B DNA MER1_type -16 317 256 401 132 0 44 chrY 18698148 18698216 -6014863 - MER1B DNA MER1_type -64 275 211 266 168 226 66 chrY 18698306 18698407 -6014672 + L1MA7 LINE L1 6103 6233 -58 1046 224 76 22 chrY 18698407 18698684 -6014395 + AluJb SINE Alu 2 293 -9 266 168 226 66 chrY 18698684 18698719 -6014360 + L1MA7 LINE L1 6233 6261 -30 342 0 0 0 chrY 18699160 18699198 -6013881 + (TG)n Simple_repeat Simple_repeat 2 39 0 21 82 0 0 chrY 18699227 18699276 -6013803 + AT_rich Low_complexity Low_complexity 1 49 0 1837 145 3 22 chrY 18700562 18700873 -6012206 + AluSc SINE Alu 2 306 -3 1868 136 7 3 chrY 18701351 18701653 -6011426 - AluSc SINE Alu -6 303 1 1637 176 0 10 chrY 18703670 18703971 -6009108 + AluSg SINE Alu 1 298 -12 21 36 0 0 chrY 18704520 18704548 -6008531 + AT_rich Low_complexity Low_complexity 1 28 0 914 261 25 29 chrY 18705447 18705688 -6007391 - AluJo SINE Alu -71 241 2 1224 260 48 6 chrY 18707151 18707482 -6005597 - L1MB5 LINE L1 -13 6161 5817 1046 206 88 74 chrY 18707538 18707824 -6005255 - L1MB5 LINE L1 -490 5690 5394 305 143 0 0 chrY 18707824 18707873 -6005206 + L1PA6 LINE L1 6106 6154 0 1046 206 88 74 chrY 18707873 18708017 -6005062 - L1MB5 LINE L1 -786 5394 5254 624 203 86 101 chrY 18708177 18708375 -6004704 - L1M4 LINE L1 -577 5601 5399 323 102 0 0 chrY 18708375 18708424 -6004655 + L1PA6 LINE L1 6106 6154 0 624 203 86 101 chrY 18708424 18708568 -6004511 - L1M4 LINE L1 -779 5399 5254 745 191 119 90 chrY 18708728 18708922 -6004157 - L1M4 LINE L1 -577 5601 5391 319 104 0 0 chrY 18708922 18708970 -6004109 + L1PA6 LINE L1 6106 6153 -1 745 191 119 90 chrY 18708970 18709110 -6003969 - L1M4 LINE L1 -787 5391 5257 533 208 23 45 chrY 18709256 18709454 -6003625 - L1MC/D LINE L1 -587 5597 5414 289 143 0 0 chrY 18709468 18709517 -6003562 + L1PA6 LINE L1 6106 6154 0 324 219 61 26 chrY 18709518 18709632 -6003447 - L1MC/D LINE L1 -755 5423 5306 566 222 79 56 chrY 18709817 18710147 -6002932 - L1M4 LINE L1 -577 5601 5254 1388 209 32 11 chrY 18712061 18712343 -6000736 - AluSg SINE Alu -12 288 1 1556 201 3 14 chrY 18712805 18713093 -5999986 + AluSx SINE Alu 3 287 -15 1372 229 7 45 chrY 18713159 18713469 -5999610 - AluJo SINE Alu -3 299 2 525 273 35 0 chrY 18713516 18713688 -5999391 - L1MA4 LINE L1 -124 6176 5999 281 154 17 0 chrY 18713690 18713751 -5999328 + L1MA4 LINE L1 6223 6287 -15 231 188 0 0 chrY 18713763 18713811 -5999268 + CT-rich Low_complexity Low_complexity 3 50 0 1421 212 3 7 chrY 18713840 18714133 -5998946 - AluSx SINE Alu -16 296 5 911 214 0 0 chrY 18714173 18714360 -5998719 - AluSg/x SINE Alu -1 311 125 315 266 68 92 chrY 18714859 18715303 -5997776 - MLT1G LTR MaLR -28 514 102 210 192 0 0 chrY 18715811 18715863 -5997216 + (TA)n Simple_repeat Simple_repeat 1 52 0 22 35 0 0 chrY 18716348 18716377 -5996702 + AT_rich Low_complexity Low_complexity 1 29 0 702 246 144 54 chrY 18718047 18718324 -5994755 + AluJo SINE Alu 11 312 0 189 182 68 0 chrY 18718837 18718881 -5994198 + L2 LINE L2 3263 3309 -4 281 282 89 24 chrY 18719202 18719326 -5993753 + LTR33A LTR ERVL 55 186 -337 2434 177 45 118 chrY 18719498 18720233 -5992846 + LTR1 LTR ERV1 1 681 -104 189 0 0 0 chrY 18720859 18720880 -5992199 + (T)n Simple_repeat Simple_repeat 1 21 0 266 311 55 43 chrY 18722106 18722360 -5990719 + SST1 Satellite centromeric 344 600 -963 269 330 64 69 chrY 18722801 18723222 -5989857 + SST1 Satellite centromeric 1134 1552 -11 222 37 0 0 chrY 18723309 18723336 -5989743 + (T)n Simple_repeat Simple_repeat 1 27 0 201 196 20 0 chrY 18723778 18723829 -5989250 + A-rich Low_complexity Low_complexity 1 52 0 231 36 0 0 chrY 18725314 18725342 -5987737 + (A)n Simple_repeat Simple_repeat 1 28 0 377 319 52 42 chrY 18725844 18726301 -5986778 + SST1 Satellite centromeric 138 599 -964 237 325 0 0 chrY 18726794 18726871 -5986208 + SST1 Satellite centromeric 1163 1239 -324 214 41 20 82 chrY 18727214 18727263 -5985816 + (TG)n Simple_repeat Simple_repeat 1 46 0 180 200 0 0 chrY 18729675 18729735 -5983344 + (TG)n Simple_repeat Simple_repeat 1 60 0 279 0 0 0 chrY 18729950 18729981 -5983098 + (A)n Simple_repeat Simple_repeat 1 31 0 191 164 16 0 chrY 18730736 18730797 -5982282 + (TG)n Simple_repeat Simple_repeat 1 62 0 180 0 0 0 chrY 18731004 18731024 -5982055 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 253 285 109 24 chrY 18732687 18732852 -5980227 + SST1 Satellite centromeric 1374 1552 -11 383 283 64 70 chrY 18733938 18734451 -5978628 + SST1 Satellite centromeric 118 627 -936 396 40 0 0 chrY 18735353 18735403 -5977676 + (TG)n Simple_repeat Simple_repeat 1 50 0 325 324 68 48 chrY 18736436 18736893 -5976186 + SST1 Satellite centromeric 137 602 -961 225 310 62 21 chrY 18740031 18740176 -5972903 + SST1 Satellite centromeric 1388 1538 -25 202 130 19 19 chrY 18740219 18740273 -5972806 + (TG)n Simple_repeat Simple_repeat 1 54 0 261 298 93 12 chrY 18742504 18742665 -5970414 + SST1 Satellite centromeric 1386 1559 -4 249 33 0 0 chrY 18742790 18742820 -5970259 + (T)n Simple_repeat Simple_repeat 1 30 0 198 0 0 0 chrY 18745251 18745273 -5967806 + (T)n Simple_repeat Simple_repeat 1 22 0 357 285 55 51 chrY 18746461 18746717 -5966362 + SST1 Satellite centromeric 344 600 -963 244 303 69 14 chrY 18747455 18747600 -5965479 + SST1 Satellite centromeric 1386 1538 -25 199 95 0 79 chrY 18747641 18747704 -5965375 + (TG)n Simple_repeat Simple_repeat 1 58 0 944 159 0 11 chrY 18747785 18747967 -5965112 + CT-rich Low_complexity Low_complexity 1 180 0 243 305 57 41 chrY 18748614 18748860 -5964219 + SST1 Satellite centromeric 353 602 -961 236 274 0 0 chrY 18749348 18749410 -5963669 + SST1 Satellite centromeric 1156 1217 -346 216 110 27 55 chrY 18749725 18749798 -5963281 + (TG)n Simple_repeat Simple_repeat 1 71 0 234 250 23 0 chrY 18752009 18752097 -5960982 + (TG)n Simple_repeat Simple_repeat 1 90 0 202 267 0 0 chrY 18752190 18752250 -5960829 + (TG)n Simple_repeat Simple_repeat 1 60 0 187 306 0 0 chrY 18752628 18752677 -5960402 - MER5A DNA MER1_type -139 50 2 278 319 104 6 chrY 18753224 18753406 -5959673 + SST1 Satellite centromeric 63 262 -1301 195 186 0 0 chrY 18754672 18754715 -5958364 + (TG)n Simple_repeat Simple_repeat 1 43 0 216 178 0 0 chrY 18756411 18756456 -5956623 + (TG)n Simple_repeat Simple_repeat 1 45 0 240 306 0 0 chrY 18758461 18758523 -5954556 + SST1 Satellite centromeric 1156 1217 -346 225 265 136 41 chrY 18758687 18758834 -5954245 + SST1 Satellite centromeric 1374 1534 -29 280 43 43 0 chrY 18758883 18758929 -5954150 + (TG)n Simple_repeat Simple_repeat 1 48 0 258 296 50 63 chrY 18760083 18760462 -5952617 + SST1 Satellite centromeric 223 596 -967 210 176 0 0 chrY 18763783 18763834 -5949245 + (TG)n Simple_repeat Simple_repeat 2 52 0 228 302 71 45 chrY 18764935 18765203 -5947876 + SST1 Satellite centromeric 191 465 -1098 259 309 0 0 chrY 18765798 18765882 -5947197 + SST1 Satellite centromeric 1156 1239 -324 279 71 0 0 chrY 18766216 18766258 -5946821 + (TG)n Simple_repeat Simple_repeat 1 42 0 7362 57 7 3 chrY 18768774 18769668 -5943411 + MER11D LTR ERVK 1 897 0 182 105 26 0 chrY 18769831 18769869 -5943210 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 233 295 66 44 chrY 18770811 18771082 -5941997 + SST1 Satellite centromeric 228 504 -1059 231 61 0 0 chrY 18771980 18772013 -5941066 + (TG)n Simple_repeat Simple_repeat 2 34 0 373 296 47 33 chrY 18772985 18773198 -5939881 + SST1 Satellite centromeric 63 278 -1285 229 297 16 0 chrY 18774002 18774066 -5939013 + SST1 Satellite centromeric 1163 1227 -336 252 158 0 0 chrY 18775236 18775293 -5937786 + (TG)n Simple_repeat Simple_repeat 2 58 0 1984 157 0 0 chrY 18776983 18777277 -5935802 - AluY SINE Alu -17 294 1 232 146 0 0 chrY 18778452 18778493 -5934586 + TAR1 Satellite telomeric 1988 2028 -83 246 81 0 0 chrY 18778705 18778742 -5934337 + (TG)n Simple_repeat Simple_repeat 2 38 0 466 304 59 45 chrY 18779727 18780236 -5932843 + SST1 Satellite centromeric 83 598 -965 205 250 0 0 chrY 18781240 18781300 -5931779 + (TG)n Simple_repeat Simple_repeat 1 60 0 279 320 65 38 chrY 18782280 18782801 -5930278 + SST1 Satellite centromeric 66 600 -963 189 0 0 0 chrY 18783702 18783723 -5929356 + (TG)n Simple_repeat Simple_repeat 2 22 0 198 0 0 0 chrY 18784930 18784952 -5928127 + (TG)n Simple_repeat Simple_repeat 1 22 0 324 327 50 43 chrY 18785972 18786437 -5926642 + SST1 Satellite centromeric 133 600 -963 1226 290 65 26 chrY 18786922 18787649 -5925430 + L1M4c LINE L1 1140 1894 -4490 774 246 148 8 chrY 18787652 18787888 -5925191 + AluJo SINE Alu 16 284 -28 21 57 0 0 chrY 18788074 18788109 -5924970 + AT_rich Low_complexity Low_complexity 1 35 0 30305 134 8 19 chrY 18788117 18794001 -5919078 - L1PA6 LINE L1 -326 5828 11 376 121 0 0 chrY 18794039 18794105 -5918974 - Alu SINE Alu 0 302 237 4400 99 2 0 chrY 18794352 18794938 -5918141 - LTR14C LTR ERVK 0 587 1 249 288 181 54 chrY 18795820 18796025 -5917054 + MIR SINE MIR 31 261 -1 23 33 0 0 chrY 18796899 18796929 -5916150 + AT_rich Low_complexity Low_complexity 1 30 0 392 50 0 75 chrY 18797346 18797426 -5915653 + (TTAAA)n Simple_repeat Simple_repeat 3 76 0 300 364 9 9 chrY 18797476 18797586 -5915493 - HAL1 LINE L1 -598 1909 1800 642 254 56 68 chrY 18798818 18799227 -5913852 - L1ME1 LINE L1 -179 5987 5584 1920 234 63 64 chrY 18800012 18800747 -5912332 + MER50 LTR ERV1 1 734 0 2384 236 49 10 chrY 18800916 18801839 -5911240 - L1MB5 LINE L1 -136 6038 5083 690 176 60 55 chrY 18801851 18802033 -5911046 + L1MB3 LINE L1 5371 5553 -621 554 162 9 0 chrY 18802033 18802138 -5910941 + L1MB3 LINE L1 6068 6173 -10 1763 174 3 10 chrY 18802249 18802553 -5910526 - AluY SINE Alu -9 302 1 306 269 46 15 chrY 18802680 18802810 -5910269 - L1MC3 LINE L1 -1767 6018 5885 1713 148 33 33 chrY 18803008 18803340 -5909739 - LTR22B LTR ERVK -34 458 127 378 107 0 0 chrY 18803337 18803393 -5909686 + AluY SINE Alu 80 135 -166 * 654 209 0 39 chrY 18803393 18803572 -5909507 + AluJo/FRAM SINE Alu 137 309 0 1375 216 9 20 chrY 18803572 18803919 -5909160 + L1P LINE L1 2011 2353 -3793 5396 117 35 13 chrY 18803934 18805245 -5907834 + L1PA8 LINE L1 4826 6166 -6 328 212 99 13 chrY 18805765 18805938 -5907141 - L1MC3 LINE L1 -765 5381 5197 1076 74 0 0 chrY 18805940 18806075 -5907004 - AluY SINE Alu -11 300 166 1370 216 0 18 chrY 18806075 18806358 -5906721 - AluSx SINE Alu -30 282 5 320 293 132 22 chrY 18806370 18806779 -5906300 - L1MC3 LINE L1 -965 5181 4728 943 227 107 12 chrY 18806942 18807184 -5905895 - AluJo SINE Alu -47 265 1 273 296 24 29 chrY 18807186 18807392 -5905687 - L1MC3 LINE L1 -1637 4509 4305 2116 160 26 91 chrY 18808442 18809029 -5904050 - MER4B LTR ERV1 -25 754 28 284 250 42 0 chrY 18809064 18809160 -5903919 - MER31-int LTR ERV1 -1316 3620 3521 1050 229 97 8 chrY 18809433 18809700 -5903379 - AluJo SINE Alu -3 309 19 6281 29 0 0 chrY 18809977 18810710 -5902369 - L1PA3 LINE L1 0 6155 5423 670 315 54 14 chrY 18811358 18811930 -5901149 - L1M4 LINE L1 -1747 4897 4303 333 210 18 18 chrY 18812246 18812413 -5900666 + (TTAGGG)n Simple_repeat Simple_repeat 6 172 0 345 168 0 48 chrY 18812476 18812643 -5900436 + (TTAGGG)n Simple_repeat Simple_repeat 6 164 0 289 182 15 23 chrY 18812678 18812810 -5900269 + (TTAGGG)n Simple_repeat Simple_repeat 4 134 0 258 236 0 33 chrY 18812880 18813064 -5900015 + (TTAGGG)n Simple_repeat Simple_repeat 1 177 0 250 223 10 32 chrY 18813077 18813390 -5899689 + (TTAGGG)n Simple_repeat Simple_repeat 1 305 0 192 77 0 0 chrY 18813475 18813501 -5899578 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1534 215 10 0 chrY 18813508 18813806 -5899273 - AluSp SINE Alu -11 302 2 679 336 27 5 chrY 18813911 18814274 -5898805 + MER52A LTR ERV1 923 1249 -506 1287 245 90 24 chrY 18815309 18816001 -5897078 - L1M4 LINE L1 -4568 2078 1329 1731 171 11 0 chrY 18816001 18816265 -5896814 - AluSc SINE Alu -22 287 21 1287 245 90 24 chrY 18816265 18816303 -5896776 - L1M4 LINE L1 -5317 1329 1295 253 257 112 27 chrY 18816421 18816608 -5896471 - L1M4c LINE L1 -3887 2497 2295 21 89 0 0 chrY 18816721 18816777 -5896302 + AT_rich Low_complexity Low_complexity 1 56 0 517 40 27 0 chrY 18817766 18817840 -5895239 + L1PA6 LINE L1 6078 6153 -1 299 276 42 120 chrY 18817925 18818142 -5894937 - L2 LINE L2 -352 2962 2763 260 246 0 0 chrY 18818173 18818230 -5894849 + MER20 DNA MER1_type 90 146 -73 1950 100 9 59 chrY 18818482 18818803 -5894276 + AluY SINE Alu 1 305 -6 476 127 0 0 chrY 18819198 18819277 -5893802 - HERVL LTR ERVL -4866 788 710 2220 272 19 7 chrY 18819278 18819862 -5893217 + MER52A LTR ERV1 1161 1751 -4 521 202 266 0 chrY 18820057 18820181 -5892898 - AluSq SINE Alu -20 293 137 786 172 0 0 chrY 18820490 18820618 -5892461 + AluSq SINE Alu 2 129 -184 300 154 0 0 chrY 18820618 18820670 -5892409 + (CA)n Simple_repeat Simple_repeat 1 52 0 1016 194 0 0 chrY 18820679 18820844 -5892235 + AluSq SINE Alu 129 293 -20 36 40 0 0 chrY 18820984 18821034 -5892045 + AT_rich Low_complexity Low_complexity 1 50 0 969 274 90 4 chrY 18821169 18821446 -5891633 - AluSx SINE Alu -11 301 1 29 70 0 0 chrY 18821546 18821603 -5891476 + AT_rich Low_complexity Low_complexity 1 57 0 21 36 0 0 chrY 18824312 18824340 -5888739 + AT_rich Low_complexity Low_complexity 1 28 0 350 266 11 21 chrY 18826438 18826532 -5886547 + AluJb SINE Alu 89 181 -121 25 51 0 0 chrY 18826769 18826808 -5886271 + AT_rich Low_complexity Low_complexity 1 39 0 774 277 20 5 chrY 18826932 18827134 -5885945 + AluJ SINE Alu 1 205 -107 210 160 0 0 chrY 18827183 18827233 -5885846 + (CA)n Simple_repeat Simple_repeat 1 50 0 1859 259 8 4 chrY 18827735 18828217 -5884862 - MER1A DNA MER1_type -18 511 28 350 290 40 0 chrY 18828230 18828330 -5884749 + AluJ SINE Alu 198 301 -1 21 36 0 0 chrY 18828333 18828361 -5884718 + AT_rich Low_complexity Low_complexity 1 28 0 1174 193 9 0 chrY 18829234 18829446 -5883633 + AluSq SINE Alu 81 294 -19 214 288 62 0 chrY 18829451 18829531 -5883548 + MIR SINE MIR 177 261 -1 602 273 36 0 chrY 18829804 18829998 -5883081 - MER2 DNA MER2_type -138 207 7 22 35 0 0 chrY 18830095 18830124 -5882955 + AT_rich Low_complexity Low_complexity 1 29 0 23 78 0 0 chrY 18830918 18830969 -5882110 + AT_rich Low_complexity Low_complexity 1 51 0 1453 220 21 0 chrY 18831563 18831849 -5881230 - AluSx SINE Alu -16 296 5 279 0 0 0 chrY 18832293 18832324 -5880755 + (CA)n Simple_repeat Simple_repeat 2 32 0 183 200 18 27 chrY 18832572 18832682 -5880397 + (TATATG)n Simple_repeat Simple_repeat 6 114 0 259 194 42 0 chrY 18832712 18832932 -5880147 + (TA)n Simple_repeat Simple_repeat 1 229 0 37062 89 2 3 chrY 18832932 18839073 -5874006 - L1PA5 LINE L1 -9 6145 11 1496 204 36 0 chrY 18839651 18839930 -5873149 + AluSx SINE Alu 1 289 -23 1005 299 74 21 chrY 18840498 18841010 -5872069 + L1MDa LINE L1 35 573 -5967 335 340 82 39 chrY 18840990 18841269 -5871810 + L1MDa LINE L1 781 1071 -5469 * 813 219 18 0 chrY 18841292 18841454 -5871625 - MER52C LTR ERV1 0 1278 1114 519 168 35 0 chrY 18841454 18841567 -5871512 + LTR22 LTR ERVK 1 117 -463 1555 189 22 6 chrY 18841584 18841901 -5871178 + LTR22 LTR ERVK 255 576 -4 568 192 149 48 chrY 18841937 18842145 -5870934 - MER52C LTR ERV1 -160 1118 890 1040 277 69 39 chrY 18842149 18842903 -5870176 - L1M4 LINE L1 -942 5204 4428 1720 173 17 7 chrY 18843293 18843588 -5869491 + AluSp SINE Alu 1 298 -15 889 223 17 52 chrY 18843691 18844036 -5869043 - L1MDa LINE L1 -6143 397 65 2476 163 71 4 chrY 18844237 18844716 -5868363 - MER9 LTR ERVK 0 511 1 11678 139 37 44 chrY 18844716 18846876 -5866203 - HERVK9 LTR ERVK 0 5916 3773 7494 141 49 48 chrY 18846867 18847537 -5865542 - HERVK9 LTR ERVK -4419 1497 829 * 204 200 0 83 chrY 18847537 18847597 -5865482 - MER5B DNA MER1_type -69 109 55 7494 141 49 48 chrY 18847597 18848363 -5864716 - HERVK9 LTR ERVK -5087 829 1 2029 184 110 7 chrY 18848363 18848420 -5864659 - MER9 LTR ERVK 0 511 461 315 0 0 0 chrY 18848420 18848455 -5864624 + (CA)n Simple_repeat Simple_repeat 2 36 0 2029 184 110 7 chrY 18848455 18848860 -5864219 - MER9 LTR ERVK -50 461 1 268 197 42 0 chrY 18850181 18850252 -5862827 + MER53 DNA DNA 115 188 -1 245 167 103 0 chrY 18850620 18850698 -5862381 + (ATTTG)n Simple_repeat Simple_repeat 3 88 0 24 32 0 0 chrY 18851176 18851207 -5861872 + AT_rich Low_complexity Low_complexity 1 31 0 1874 133 3 3 chrY 18853520 18853805 -5859274 + AluY SINE Alu 27 311 0 1067 211 59 88 chrY 18854860 18855234 -5857845 - MLT1A1 LTR MaLR 0 365 3 25 31 0 0 chrY 18856013 18856045 -5857034 + AT_rich Low_complexity Low_complexity 1 32 0 306 0 0 0 chrY 18857571 18857605 -5855474 + (TTA)n Simple_repeat Simple_repeat 2 35 0 1423 184 8 0 chrY 18857605 18857844 -5855235 - AluSg SINE Alu -36 274 34 190 309 100 36 chrY 18858063 18858173 -5854906 + L2 LINE L2 3170 3286 -27 2480 205 68 7 chrY 18858480 18859040 -5854039 - LTR4 LTR ERV1 -2 594 1 15364 158 29 15 chrY 18859040 18861812 -5851267 - HERV3 LTR ERV1 0 8426 5616 29949 175 15 9 chrY 18861814 18867185 -5845894 - HERV3 LTR ERV1 -3024 5402 1 656 216 0 0 chrY 18867186 18867311 -5845768 - LTR4 LTR ERV1 0 596 472 537 322 17 13 chrY 18867349 18867579 -5845500 - L1MDa LINE L1 -6191 349 119 225 301 0 32 chrY 18867945 18868038 -5845041 + MIR SINE MIR 124 213 -49 2377 74 0 7 chrY 18868888 18869186 -5843893 - AluY SINE Alu -15 296 1 328 124 5 240 chrY 18869261 18869478 -5843601 - MER53 DNA DNA -1 188 23 21 0 0 0 chrY 18870287 18870308 -5842771 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chrY 18872310 18872333 -5840746 + AT_rich Low_complexity Low_complexity 1 23 0 837 243 64 94 chrY 18873790 18874164 -5838915 - MLT1A1 LTR MaLR 0 365 3 209 247 11 34 chrY 18876315 18876404 -5836675 + CT-rich Low_complexity Low_complexity 4 90 0 249 109 0 0 chrY 18877127 18877173 -5835906 + (T)n Simple_repeat Simple_repeat 1 46 0 265 289 60 0 chrY 18878724 18878807 -5834272 + L2 LINE L2 3206 3293 -20 8611 60 3 2 chrY 18879302 18881191 -5831888 - L1PA5 LINE L1 -2 6152 4261 9644 34 0 0 chrY 18881190 18882483 -5830596 - L1P1 LINE L1 -700 5455 4163 1915 122 4 0 chrY 18882483 18882745 -5830334 - AluY SINE Alu -2 309 47 197 234 39 104 chrY 18883300 18883377 -5829702 - MIR SINE MIR -38 224 153 914 148 15 0 chrY 18883600 18883735 -5829344 + AluSx SINE Alu 1 137 -175 14226 94 3 34 chrY 18883737 18885935 -5827144 + L1PA4 LINE L1 7 2137 -4009 5178 66 5 6 chrY 18885924 18886800 -5826279 + L1PA4 LINE L1 5101 5979 -176 * 3504 14 0 5 chrY 18887482 18887896 -5825183 - L1PA2 LINE L1 -377 5778 5365 3182 34 0 0 chrY 18887896 18888273 -5824806 + L1PA2 LINE L1 5776 6155 0 198 0 0 0 chrY 18888280 18888302 -5824777 + (CA)n Simple_repeat Simple_repeat 1 22 0 335 315 54 8 chrY 18888961 18889091 -5823988 + L2 LINE L2 2823 2958 -355 21 36 0 0 chrY 18890065 18890093 -5822986 + AT_rich Low_complexity Low_complexity 1 28 0 380 309 138 20 chrY 18890133 18890379 -5822700 + L1M4 LINE L1 976 1250 -5292 442 120 13 0 chrY 18890391 18890466 -5822613 + LTR15 LTR ERV1 1 76 -417 2055 113 8 7 chrY 18890468 18890676 -5822403 + HERV15 LTR ERV1 6770 6976 -1759 200 33 0 33 chrY 18890676 18890706 -5822373 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2055 113 8 7 chrY 18890706 18891217 -5821862 + HERV15 LTR ERV1 6976 7642 -1093 804 107 16 0 chrY 18891219 18891340 -5821739 + LTR15 LTR ERV1 355 477 -16 2693 168 25 25 chrY 18892010 18892605 -5820474 + L1PA10 LINE L1 5390 5984 -184 863 130 7 0 chrY 18892601 18892739 -5820340 + L1P LINE L1 1 139 -6007 * 17788 53 1 1 chrY 18892739 18895800 -5817279 + L1PA4 LINE L1 3085 6155 0 920 179 60 0 chrY 18895809 18895977 -5817102 + AluSx SINE Alu 118 295 -15 1736 198 71 41 chrY 18895995 18896504 -5816575 - LTR61 LTR ERV1 0 595 72 491 258 0 8 chrY 18896524 18896652 -5816427 - HERV3 LTR ERV1 -17 8409 8283 6254 270 17 16 chrY 18896736 18899416 -5813663 - HERV3 LTR ERV1 -3666 4760 1986 4558 265 40 14 chrY 18899414 18900678 -5812401 - HERV3 LTR ERV1 -6768 1658 363 * 1631 240 0 13 chrY 18900745 18901120 -5811959 - HERV3 LTR ERV1 -8052 374 5 1135 194 40 80 chrY 18901124 18901500 -5811579 - LTR61 LTR ERV1 0 595 235 1685 194 0 25 chrY 18901723 18902043 -5811036 + AluSx SINE Alu 1 312 0 193 304 36 0 chrY 18903734 18903790 -5809289 - MIR SINE MIR -1 261 204 489 227 27 96 chrY 18903807 18904027 -5809052 + MER46C DNA MER2_type 5 209 -129 191 304 157 10 chrY 18904110 18904212 -5808867 - MIR SINE MIR -82 180 64 498 247 145 38 chrY 18904683 18904918 -5808161 - MIR SINE MIR -1 261 2 21 36 0 0 chrY 18906189 18906217 -5806862 + AT_rich Low_complexity Low_complexity 1 28 0 235 342 114 11 chrY 18906964 18907148 -5805931 + L3 LINE CR1 195 397 -1180 243 134 0 45 chrY 18907465 18907532 -5805547 + (TA)n Simple_repeat Simple_repeat 1 64 0 1427 212 10 14 chrY 18907813 18908110 -5804969 + AluSx SINE Alu 1 296 -16 1452 217 11 3 chrY 18908304 18908590 -5804489 - AluJb SINE Alu -24 288 1 372 366 84 36 chrY 18908791 18909100 -5803979 - L2 LINE L2 -5 3267 2944 186 43 0 0 chrY 18910021 18910044 -5803035 + (TAAAAA)n Simple_repeat Simple_repeat 2 24 0 3412 108 28 4 chrY 18910501 18910942 -5802137 + MER9 LTR ERVK 1 457 -54 414 0 0 0 chrY 18910942 18910988 -5802091 + (TG)n Simple_repeat Simple_repeat 1 46 0 3412 108 28 4 chrY 18910988 18911045 -5802034 + MER9 LTR ERVK 457 511 0 3695 109 28 3 chrY 18911045 18911623 -5801456 + HERVK9 LTR ERVK 1 592 -5324 5344 94 1 5 chrY 18911623 18912378 -5800701 + HERVK9 LTR ERVK 1268 2019 -3897 188 322 34 51 chrY 18912511 18912629 -5800450 - L2 LINE L2 -5 3308 3193 241 191 0 0 chrY 18912630 18912672 -5800407 - LTR33 LTR ERVL -2 519 478 * 738 310 118 6 chrY 18912668 18913000 -5800079 - LTR33 LTR ERVL -149 372 4 258 364 93 0 chrY 18913000 18913138 -5799941 - LTR33 LTR ERVL -370 151 1 310 252 91 75 chrY 18913336 18913590 -5799489 - L1MC5 LINE L1 -37 7924 7667 387 280 44 11 chrY 18913716 18913898 -5799181 - L1MC5 LINE L1 -518 7443 7256 438 295 51 27 chrY 18914036 18914372 -5798707 - L1MC5 LINE L1 -742 7219 6876 407 322 60 20 chrY 18915451 18915600 -5797479 - MIR3 SINE MIR -43 165 11 244 287 37 93 chrY 18915755 18915863 -5797216 - MER5B DNA MER1_type -72 106 5 269 154 39 13 chrY 18916725 18916803 -5796276 + GA-rich Low_complexity Low_complexity 1 80 0 258 331 35 55 chrY 18917170 18917315 -5795764 + MIR SINE MIR 65 206 -56 24 53 0 0 chrY 18918520 18918558 -5794521 + AT_rich Low_complexity Low_complexity 1 38 0 237 264 97 0 chrY 18919137 18919209 -5793870 + MIR SINE MIR 86 164 -98 370 408 25 0 chrY 18919634 18919791 -5793288 + L2 LINE L2 3091 3251 -21 197 163 20 0 chrY 18919804 18919853 -5793226 + (TA)n Simple_repeat Simple_repeat 1 50 0 195 203 0 0 chrY 18920940 18920999 -5792080 + (TG)n Simple_repeat Simple_repeat 2 60 0 23 0 0 0 chrY 18921018 18921041 -5792038 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chrY 18921109 18921132 -5791947 + AT_rich Low_complexity Low_complexity 1 23 0 3299 113 11 4 chrY 18921132 18921656 -5791423 - L1MA1 LINE L1 -6 6296 5769 1259 20 0 0 chrY 18921658 18921805 -5791274 - L1PA2 LINE L1 -3 6152 6006 341 94 0 0 chrY 18921805 18921858 -5791221 - L1MA1 LINE L1 -525 5777 5725 405 109 6 14 chrY 18921862 18921954 -5791125 + L1M1 LINE L1 5587 5668 -483 937 266 4 35 chrY 18922667 18922926 -5790153 + AluJo SINE Alu 8 258 -54 2519 66 0 0 chrY 18926262 18926565 -5786514 + AluY SINE Alu 1 303 -8 1176 170 86 116 chrY 18927931 18928395 -5784684 + LTR7 LTR ERV1 1 450 0 347 118 9 55 chrY 18929983 18930093 -5782986 + (TA)n Simple_repeat Simple_repeat 2 106 0 417 110 0 0 chrY 18930587 18930660 -5782419 + (GA)n Simple_repeat Simple_repeat 1 73 0 470 257 129 7 chrY 18930660 18930800 -5782279 - FAM SINE Alu -17 158 2 977 249 15 15 chrY 18934648 18934941 -5778138 + AluJo SINE Alu 13 305 0 1911 162 7 0 chrY 18934941 18935237 -5777842 + AluSx SINE Alu 1 298 -14 1678 184 0 13 chrY 18937002 18937286 -5775793 + AluSx SINE Alu 1 282 -30 258 32 0 0 chrY 18937286 18937317 -5775762 + (CA)n Simple_repeat Simple_repeat 2 32 0 1678 184 0 13 chrY 18937317 18937341 -5775738 + AluSx SINE Alu 282 305 -7 317 289 114 109 chrY 18939525 18940165 -5772914 + L1M2 LINE L1 472 1114 -5735 525 252 0 9 chrY 18941632 18941739 -5771340 + FLAM_C SINE Alu 13 118 -25 287 122 20 0 chrY 18941742 18941791 -5771288 - MER1B DNA MER1_type -13 326 277 299 108 0 135 chrY 18941955 18942029 -5771050 - MER1B DNA MER1_type -65 274 211 283 187 16 98 chrY 18942134 18942220 -5770859 + L1MA7 LINE L1 6150 6225 -66 794 214 114 68 chrY 18942220 18942500 -5770579 + AluJb SINE Alu 2 294 -8 283 187 16 98 chrY 18942500 18942536 -5770543 + L1MA7 LINE L1 6225 6262 -29 201 245 10 41 chrY 18942987 18943085 -5769994 + (TATG)n Simple_repeat Simple_repeat 2 96 0 2038 133 3 0 chrY 18944846 18945154 -5767925 - AluSc SINE Alu 0 309 1 24 0 0 0 chrY 18947162 18947186 -5765893 + AT_rich Low_complexity Low_complexity 1 24 0 1439 190 7 7 chrY 18947196 18947470 -5765609 + AluSg SINE Alu 5 278 -32 216 0 0 0 chrY 18947470 18947494 -5765585 + (CAAT)n Simple_repeat Simple_repeat 4 27 0 30 0 0 0 chrY 18947763 18947793 -5765286 + AT_rich Low_complexity Low_complexity 1 30 0 1054 262 38 31 chrY 18948891 18949181 -5763898 - AluJo SINE Alu -10 292 1 1055 285 32 6 chrY 18950658 18950974 -5762105 - L1MB5 LINE L1 -13 6161 5838 1253 205 111 18 chrY 18951046 18951441 -5761638 - L1MB5 LINE L1 -495 5685 5254 1215 227 33 4 chrY 18953391 18953687 -5759392 - AluSg SINE Alu 0 304 1 1450 206 11 14 chrY 18954170 18954456 -5758623 + AluSx SINE Alu 3 287 -25 1210 235 13 41 chrY 18954514 18954829 -5758250 - AluJo SINE Alu -5 307 2 525 273 35 0 chrY 18954876 18955048 -5758031 - L1MA4 LINE L1 -124 6176 5999 281 154 17 0 chrY 18955050 18955111 -5757968 + L1MA4 LINE L1 6223 6287 -15 231 188 0 0 chrY 18955123 18955171 -5757908 + CT-rich Low_complexity Low_complexity 3 50 0 1209 232 28 3 chrY 18955200 18955355 -5757724 - AluSx SINE Alu -17 295 128 312 27 0 0 chrY 18955355 18955392 -5757687 + (TG)n Simple_repeat Simple_repeat 2 38 0 1209 232 28 3 chrY 18955392 18955520 -5757559 - AluSx SINE Alu -184 128 5 898 243 5 0 chrY 18955560 18955774 -5757305 - AluSg/x SINE Alu -1 311 97 301 279 71 36 chrY 18956242 18956382 -5756697 - MLT1F LTR MaLR -28 514 370 1794 163 0 0 chrY 18956852 18957135 -5755944 - AluSq SINE Alu -30 283 1 1582 173 14 3 chrY 18957432 18957715 -5755364 + AluSx SINE Alu 1 286 -26 548 222 0 0 chrY 18962733 18962832 -5750247 + AluJ/FLAM SINE Alu 3 101 -211 263 174 0 0 chrY 18962851 18962897 -5750182 - MER1B DNA MER1_type -16 317 272 401 132 0 44 chrY 18963063 18963131 -5749948 - MER1B DNA MER1_type -64 275 211 281 161 226 66 chrY 18963221 18963322 -5749757 + L1MA7 LINE L1 6103 6233 -58 1046 224 76 22 chrY 18963322 18963599 -5749480 + AluJb SINE Alu 2 293 -9 281 161 226 66 chrY 18963599 18963634 -5749445 + L1MA7 LINE L1 6233 6261 -30 432 0 0 0 chrY 18964075 18964123 -5748956 + (TG)n Simple_repeat Simple_repeat 2 49 0 21 82 0 0 chrY 18964152 18964201 -5748878 + AT_rich Low_complexity Low_complexity 1 49 0 1837 145 3 22 chrY 18965487 18965798 -5747281 + AluSc SINE Alu 2 306 -3 1882 133 7 3 chrY 18966276 18966578 -5746501 - AluSc SINE Alu -6 303 1 1637 176 0 10 chrY 18968595 18968896 -5744183 + AluSg SINE Alu 1 298 -12 21 36 0 0 chrY 18969445 18969473 -5743606 + AT_rich Low_complexity Low_complexity 1 28 0 901 266 25 29 chrY 18970372 18970613 -5742466 - AluJo SINE Alu -71 241 2 1239 257 48 6 chrY 18972076 18972407 -5740672 - L1MB5 LINE L1 -13 6161 5817 1026 206 88 74 chrY 18972463 18972749 -5740330 - L1MB5 LINE L1 -490 5690 5394 305 143 0 0 chrY 18972749 18972798 -5740281 + L1PA6 LINE L1 6106 6154 0 1026 206 88 74 chrY 18972798 18972942 -5740137 - L1MB5 LINE L1 -786 5394 5254 597 204 80 112 chrY 18973102 18973300 -5739779 - L1M4 LINE L1 -577 5601 5404 304 106 0 0 chrY 18973300 18973347 -5739732 + L1PA6 LINE L1 6106 6152 -2 597 204 80 112 chrY 18973347 18973494 -5739585 - L1M4 LINE L1 -774 5404 5254 717 194 119 90 chrY 18973654 18973848 -5739231 - L1M4 LINE L1 -577 5601 5391 343 83 0 0 chrY 18973848 18973896 -5739183 + L1PA6 LINE L1 6106 6153 -1 717 194 119 90 chrY 18973896 18974036 -5739043 - L1M4 LINE L1 -787 5391 5257 533 208 23 45 chrY 18974182 18974380 -5738699 - L1MC/D LINE L1 -587 5597 5414 289 143 0 0 chrY 18974394 18974443 -5738636 + L1PA6 LINE L1 6106 6154 0 324 219 61 26 chrY 18974444 18974558 -5738521 - L1MC/D LINE L1 -755 5423 5306 593 213 83 53 chrY 18974743 18975071 -5738008 - L1M4 LINE L1 -577 5601 5254 1377 216 32 11 chrY 18976985 18977268 -5735811 - AluSg SINE Alu -11 289 1 1578 198 3 14 chrY 18977730 18978018 -5735061 + AluSx SINE Alu 3 287 -15 1385 226 7 45 chrY 18978084 18978394 -5734685 - AluJo SINE Alu -3 299 2 525 273 35 0 chrY 18978441 18978613 -5734466 - L1MA4 LINE L1 -124 6176 5999 277 174 27 0 chrY 18978601 18978680 -5734399 + L1MA4 LINE L1 6209 6292 -11 * 231 188 0 0 chrY 18978688 18978736 -5734343 + CT-rich Low_complexity Low_complexity 3 50 0 1343 223 3 7 chrY 18978765 18979057 -5734022 - AluSx SINE Alu -17 295 5 911 214 0 0 chrY 18979097 18979284 -5733795 - AluSg/x SINE Alu -1 311 125 303 279 71 36 chrY 18979783 18979923 -5733156 - MLT1F LTR MaLR -28 514 370 1794 163 0 0 chrY 18980393 18980676 -5732403 - AluSq SINE Alu -30 283 1 1582 173 14 3 chrY 18980973 18981256 -5731823 + AluSx SINE Alu 1 286 -26 506 222 0 0 chrY 18986274 18986373 -5726706 + AluJ/FLAM SINE Alu 3 101 -211 263 174 0 0 chrY 18986392 18986438 -5726641 - MER1B DNA MER1_type -16 317 272 403 132 0 44 chrY 18986604 18986672 -5726407 - MER1B DNA MER1_type -64 275 211 268 161 226 66 chrY 18986762 18986863 -5726216 + L1MA7 LINE L1 6103 6233 -58 928 224 76 22 chrY 18986863 18987140 -5725939 + AluJb SINE Alu 2 293 -9 268 161 226 66 chrY 18987140 18987175 -5725904 + L1MA7 LINE L1 6233 6261 -30 432 0 0 0 chrY 18987616 18987664 -5725415 + (TG)n Simple_repeat Simple_repeat 2 49 0 21 82 0 0 chrY 18987693 18987742 -5725337 + AT_rich Low_complexity Low_complexity 1 49 0 1817 148 3 22 chrY 18989028 18989339 -5723740 + AluSc SINE Alu 2 306 -3 1906 133 7 3 chrY 18989817 18990119 -5722960 - AluSc SINE Alu -6 303 1 1659 176 0 10 chrY 18992136 18992437 -5720642 + AluSg SINE Alu 1 298 -12 21 36 0 0 chrY 18992986 18993014 -5720065 + AT_rich Low_complexity Low_complexity 1 28 0 813 262 25 30 chrY 18993917 18994154 -5718925 - AluJo SINE Alu -75 237 2 1849 238 150 17 chrY 18995617 18996276 -5716803 - L1MB5 LINE L1 -13 6161 5415 298 143 0 0 chrY 18996290 18996339 -5716740 + L1PA6 LINE L1 6106 6154 0 306 210 196 7 chrY 18996340 18996483 -5716596 - L1MB5 LINE L1 -761 5423 5254 478 221 15 54 chrY 18996643 18996827 -5716252 - L1M4 LINE L1 -573 5601 5415 297 122 0 0 chrY 18996841 18996890 -5716189 + L1PA6 LINE L1 6106 6154 0 291 243 109 9 chrY 18996892 18997035 -5716044 - L1M4 LINE L1 -746 5423 5254 716 191 119 90 chrY 18997195 18997389 -5715690 - L1M4 LINE L1 -577 5601 5391 333 83 0 0 chrY 18997389 18997437 -5715642 + L1PA6 LINE L1 6106 6153 -1 716 191 119 90 chrY 18997437 18997577 -5715502 - L1M4 LINE L1 -787 5391 5257 525 218 23 45 chrY 18997725 18997921 -5715158 - L1ME LINE L1 -553 5617 5415 283 143 0 0 chrY 18997935 18997984 -5715095 + L1PA6 LINE L1 6106 6154 0 313 219 61 26 chrY 18997985 18998099 -5714980 - L1ME LINE L1 -755 5423 5306 579 213 83 53 chrY 18998284 18998612 -5714467 - L1M4 LINE L1 -577 5601 5254 1270 204 33 11 chrY 19000527 19000802 -5712277 - AluSg SINE Alu -21 289 9 1461 194 3 14 chrY 19001276 19001560 -5711519 + AluSx SINE Alu 7 287 -25 1205 229 7 45 chrY 19001626 19001936 -5711143 - AluJo SINE Alu -13 299 2 515 273 35 0 chrY 19001983 19002155 -5710924 - L1MA4 LINE L1 -124 6176 5999 275 154 17 0 chrY 19002157 19002218 -5710861 + L1MA4 LINE L1 6223 6287 -15 231 188 0 0 chrY 19002230 19002278 -5710801 + CT-rich Low_complexity Low_complexity 3 50 0 1228 239 28 3 chrY 19002307 19002462 -5710617 - AluSx SINE Alu -7 295 128 366 23 0 0 chrY 19002462 19002505 -5710574 + (TG)n Simple_repeat Simple_repeat 2 44 0 1228 239 28 3 chrY 19002505 19002633 -5710446 - AluSx SINE Alu -174 128 5 897 243 5 0 chrY 19002673 19002887 -5710192 - AluSg/x SINE Alu -1 309 95 293 273 79 36 chrY 19003355 19003494 -5709585 - MLT1F LTR MaLR -28 514 370 234 302 48 63 chrY 19003602 19003791 -5709288 - MLT1F LTR MaLR -303 287 102 803 78 0 0 chrY 19008747 19008850 -5704229 - L1P3 LINE L1 -622 5532 5430 2260 89 9 3 chrY 19008850 19009164 -5703915 + L1PA6 LINE L1 5837 6154 0 444 183 0 0 chrY 19010253 19010346 -5702733 + GA-rich Low_complexity Low_complexity 1 93 0 21 0 0 0 chrY 19010584 19010605 -5702474 + AT_rich Low_complexity Low_complexity 1 21 0 387 0 0 0 chrY 19012262 19012305 -5700774 + (TA)n Simple_repeat Simple_repeat 2 44 0 364 229 66 10 chrY 19012584 19012697 -5700382 + AluJo SINE Alu 11 116 -186 186 43 0 0 chrY 19012697 19012720 -5700359 + (TTAA)n Simple_repeat Simple_repeat 1 23 0 364 229 66 10 chrY 19012720 19012833 -5700246 + AluJo SINE Alu 116 282 -20 263 262 119 0 chrY 19013780 19013864 -5699215 + LTR33A LTR ERVL 92 185 -338 365 217 0 22 chrY 19014037 19014129 -5698950 + LTR1 LTR ERV1 1 90 -695 * 623 173 10 0 chrY 19014128 19014232 -5698847 + LTR1 LTR ERV1 577 681 -104 479 292 56 49 chrY 19015156 19015546 -5697533 + SST1 Satellite centromeric 132 524 -1039 392 319 54 56 chrY 19016095 19016487 -5696592 + SST1 Satellite centromeric 1148 1538 -25 327 285 54 72 chrY 19017632 19017965 -5695114 + SST1 Satellite centromeric 132 458 -1105 287 265 106 33 chrY 19018873 19019024 -5694055 + SST1 Satellite centromeric 1374 1535 -28 208 241 12 12 chrY 19019030 19019113 -5693966 + (TG)n Simple_repeat Simple_repeat 2 84 0 440 266 67 59 chrY 19019887 19020274 -5692805 + SST1 Satellite centromeric 207 596 -967 222 218 18 0 chrY 19021188 19021243 -5691836 + (TG)n Simple_repeat Simple_repeat 1 56 0 1625 216 73 19 chrY 19021838 19022039 -5691040 + LTR2 LTR ERV1 1 190 -259 204 40 0 0 chrY 19022039 19022064 -5691015 + (TTCTG)n Simple_repeat Simple_repeat 1 25 0 1625 216 73 19 chrY 19022064 19022288 -5690791 + LTR2 LTR ERV1 190 449 0 10054 192 21 15 chrY 19022296 19024566 -5688513 + Harlequin LTR ERV1 9 2373 -5440 2704 137 2 14 chrY 19024573 19024988 -5688091 + Harlequin LTR ERV1 2507 2916 -4897 * 9649 197 23 63 chrY 19024986 19027324 -5685755 + Harlequin LTR ERV1 4721 6895 -1 1758 241 9 24 chrY 19027324 19027780 -5685299 + LTR2 LTR ERV1 1 449 0 257 329 48 33 chrY 19028183 19028393 -5684686 + SST1 Satellite centromeric 80 292 -1271 4180 106 8 8 chrY 19028507 19028758 -5684321 + LTR14C LTR ERVK 1 251 -336 2088 114 40 0 chrY 19028758 19029056 -5684023 - AluYa5 SINE Alu -1 310 1 4180 106 8 8 chrY 19029056 19029391 -5683688 + LTR14C LTR ERVK 250 587 0 11676 121 14 31 chrY 19029391 19031200 -5681879 + HERVK14C LTR ERVK 1 1777 -5640 4596 121 12 5 chrY 19031177 19031847 -5681232 + HERVK14C LTR ERVK 1880 2554 -4863 * 12655 111 6 0 chrY 19031828 19033943 -5679136 + HERVK14C LTR ERVK 5289 7417 0 4224 108 3 10 chrY 19033943 19034534 -5678545 + LTR14C LTR ERVK 1 587 0 218 259 12 0 chrY 19035626 19035707 -5677372 + (TG)n Simple_repeat Simple_repeat 1 82 0 189 0 0 0 chrY 19036196 19036217 -5676862 + (TAAAAA)n Simple_repeat Simple_repeat 2 22 0 377 321 46 31 chrY 19036807 19037134 -5675945 + SST1 Satellite centromeric 190 521 -1042 222 37 0 0 chrY 19038130 19038157 -5674922 + (TG)n Simple_repeat Simple_repeat 2 28 0 204 203 38 13 chrY 19040727 19040806 -5672273 + (TG)n Simple_repeat Simple_repeat 2 82 0 180 111 0 0 chrY 19041011 19041038 -5672041 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 237 297 52 62 chrY 19042148 19042340 -5670739 + SST1 Satellite centromeric 412 601 -962 4522 104 72 2 chrY 19042522 19043165 -5669914 - LTR12 LTR ERV1 0 688 1 236 200 0 0 chrY 19043496 19043536 -5669543 + SST1 Satellite centromeric 1162 1201 -362 186 43 0 0 chrY 19044028 19044051 -5669028 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 339 25 0 0 chrY 19044279 19044319 -5668760 + (CA)n Simple_repeat Simple_repeat 1 40 0 226 312 84 13 chrY 19044356 19044510 -5668569 - SST1 Satellite centromeric -25 1538 1374 252 0 0 0 chrY 19046531 19046559 -5666520 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 239 197 33 0 chrY 19046766 19046827 -5666252 + (CA)n Simple_repeat Simple_repeat 2 64 0 217 115 19 19 chrY 19049256 19049308 -5663771 + (CA)n Simple_repeat Simple_repeat 1 52 0 337 310 54 41 chrY 19050237 19050627 -5662452 - SST1 Satellite centromeric -962 601 207 314 161 74 12 chrY 19151349 19151430 -5561649 + L1ME3A LINE L1 6078 6163 -7 21 0 0 0 chrY 19151789 19151810 -5561269 + AT_rich Low_complexity Low_complexity 1 21 0 375 169 31 15 chrY 19152081 19152146 -5560933 + Charlie5 DNA MER1_type 2 67 -2545 1729 170 21 0 chrY 19152997 19153286 -5559793 - AluJb SINE Alu -17 295 1 472 282 92 53 chrY 19154782 19155161 -5557918 - SST1 Satellite centromeric -963 600 207 198 0 0 0 chrY 19156226 19156248 -5556831 + (A)n Simple_repeat Simple_repeat 1 22 0 249 33 0 0 chrY 19158679 19158709 -5554370 + (A)n Simple_repeat Simple_repeat 1 30 0 317 298 93 12 chrY 19158834 19158995 -5554084 - SST1 Satellite centromeric -4 1559 1386 263 342 57 46 chrY 19159712 19160171 -5552908 - SST1 Satellite centromeric -962 601 138 202 130 19 19 chrY 19161226 19161280 -5551799 + (CA)n Simple_repeat Simple_repeat 1 54 0 272 310 62 21 chrY 19161323 19161468 -5551611 - SST1 Satellite centromeric -25 1538 1388 481 315 86 59 chrY 19164606 19165165 -5547914 - SST1 Satellite centromeric -961 602 29 396 40 0 0 chrY 19166096 19166146 -5546933 + (CA)n Simple_repeat Simple_repeat 1 50 0 540 283 64 70 chrY 19167048 19167561 -5545518 - SST1 Satellite centromeric -936 627 118 312 279 109 24 chrY 19168647 19168812 -5544267 - SST1 Satellite centromeric -11 1552 1374 340 319 57 44 chrY 19169536 19169993 -5543086 - SST1 Satellite centromeric -963 600 138 180 0 0 0 chrY 19170475 19170495 -5542584 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 191 164 16 0 chrY 19170702 19170763 -5542316 + (CA)n Simple_repeat Simple_repeat 1 62 0 279 0 0 0 chrY 19171518 19171549 -5541530 + (T)n Simple_repeat Simple_repeat 1 31 0 180 200 0 0 chrY 19171764 19171824 -5541255 + (CA)n Simple_repeat Simple_repeat 1 60 0 229 287 98 28 chrY 19171861 19172004 -5541075 - SST1 Satellite centromeric -25 1538 1386 214 41 20 82 chrY 19174236 19174285 -5538794 + (CA)n Simple_repeat Simple_repeat 1 46 0 238 325 0 0 chrY 19174628 19174705 -5538374 - SST1 Satellite centromeric -324 1239 1163 401 319 52 42 chrY 19175199 19175656 -5537423 - SST1 Satellite centromeric -964 599 138 231 36 0 0 chrY 19176158 19176186 -5536893 + (T)n Simple_repeat Simple_repeat 1 28 0 201 196 20 0 chrY 19177671 19177722 -5535357 + T-rich Low_complexity Low_complexity 1 52 0 222 37 0 0 chrY 19178164 19178191 -5534888 + (A)n Simple_repeat Simple_repeat 1 27 0 298 328 67 71 chrY 19178278 19178699 -5534380 - SST1 Satellite centromeric -11 1552 1134 279 311 55 43 chrY 19179140 19179394 -5533685 - SST1 Satellite centromeric -963 600 344 189 0 0 0 chrY 19180620 19180641 -5532438 + (A)n Simple_repeat Simple_repeat 1 21 0 2492 177 45 118 chrY 19181267 19182002 -5531077 - LTR1 LTR ERV1 -104 681 1 277 282 89 24 chrY 19182174 19182298 -5530781 - LTR33A LTR ERVL -337 186 55 197 182 68 0 chrY 19182619 19182663 -5530416 - L2 LINE L2 -4 3309 3263 602 246 144 54 chrY 19183176 19183453 -5529626 - AluJo SINE Alu 0 312 11 22 35 0 0 chrY 19185123 19185152 -5527927 + AT_rich Low_complexity Low_complexity 1 29 0 210 192 0 0 chrY 19185637 19185689 -5527390 + (TA)n Simple_repeat Simple_repeat 1 52 0 310 266 66 90 chrY 19186197 19186641 -5526438 + MLT1G LTR MaLR 102 514 -28 911 214 0 0 chrY 19187140 19187327 -5525752 + AluSg/x SINE Alu 125 311 -1 1437 212 3 7 chrY 19187367 19187660 -5525419 + AluSx SINE Alu 5 296 -16 231 188 0 0 chrY 19187689 19187737 -5525342 + GA-rich Low_complexity Low_complexity 3 50 0 267 154 17 0 chrY 19187749 19187810 -5525269 - L1MA4 LINE L1 -15 6287 6223 493 273 35 0 chrY 19187812 19187984 -5525095 + L1MA4 LINE L1 5999 6176 -124 1251 229 7 45 chrY 19188031 19188341 -5524738 + AluJo SINE Alu 2 299 -3 1431 201 3 14 chrY 19188407 19188695 -5524384 - AluSx SINE Alu -15 287 3 1271 209 32 11 chrY 19189157 19189439 -5523640 + AluSg SINE Alu 1 288 -12 558 213 42 57 chrY 19191353 19191683 -5521396 + L1M4 LINE L1 5254 5601 -583 298 219 61 26 chrY 19191868 19191982 -5521097 + L1MC/D LINE L1 5306 5423 -755 275 143 0 0 chrY 19191983 19192032 -5521047 - L1PA6 LINE L1 0 6154 6106 524 222 26 46 chrY 19192046 19192244 -5520835 + L1MC/D LINE L1 5414 5616 -625 339 207 109 9 chrY 19192388 19192530 -5520549 + L1M4 LINE L1 5255 5423 -746 302 104 0 0 chrY 19192530 19192578 -5520501 - L1PA6 LINE L1 -1 6153 6106 557 228 67 28 chrY 19192592 19192772 -5520307 + L1M4 LINE L1 5415 5601 -573 576 194 86 109 chrY 19192932 19193076 -5520003 + L1M4 LINE L1 5254 5400 -784 303 102 0 0 chrY 19193076 19193125 -5519954 - L1PA6 LINE L1 0 6154 6106 576 194 86 109 chrY 19193125 19193323 -5519756 + L1M4 LINE L1 5400 5601 -583 288 223 109 9 chrY 19193483 19193626 -5519453 + L1MB5 LINE L1 5254 5423 -746 289 143 0 0 chrY 19193627 19193676 -5519403 - L1PA6 LINE L1 0 6154 6106 893 217 48 33 chrY 19193690 19193962 -5519117 + L1MB5 LINE L1 5415 5690 -490 1188 260 48 6 chrY 19194018 19194349 -5518730 + L1MB5 LINE L1 5817 6161 -13 825 260 25 29 chrY 19195811 19196053 -5517026 + AluJo SINE Alu 1 241 -71 21 36 0 0 chrY 19196952 19196980 -5516099 + AT_rich Low_complexity Low_complexity 1 28 0 1630 176 0 10 chrY 19197529 19197830 -5515249 - AluSg SINE Alu -12 298 1 1846 136 7 3 chrY 19199847 19200149 -5512930 + AluSc SINE Alu 1 303 -6 1834 145 3 22 chrY 19200627 19200938 -5512141 - AluSc SINE Alu -3 306 2 21 82 0 0 chrY 19202224 19202273 -5510806 + AT_rich Low_complexity Low_complexity 1 49 0 342 0 0 0 chrY 19202302 19202340 -5510739 + (CA)n Simple_repeat Simple_repeat 2 39 0 240 168 226 66 chrY 19202781 19202816 -5510263 - L1MA7 LINE L1 -30 6261 6233 936 224 76 22 chrY 19202816 19203093 -5509986 - AluJb SINE Alu -9 293 2 240 168 226 66 chrY 19203093 19203194 -5509885 - L1MA7 LINE L1 -58 6233 6103 395 132 0 44 chrY 19203284 19203352 -5509727 + MER1B DNA MER1_type 211 275 -64 275 203 0 31 chrY 19203500 19203564 -5509515 + MER1B DNA MER1_type 256 317 -16 508 222 0 0 chrY 19203583 19203682 -5509397 - AluJ/FLAM SINE Alu -211 101 3 21 0 0 0 chrY 19208550 19208571 -5504508 + AT_rich Low_complexity Low_complexity 1 21 0 1582 170 14 3 chrY 19208710 19208993 -5504086 - AluSx SINE Alu -26 286 1 1910 148 0 0 chrY 19209364 19209647 -5503432 + AluSq SINE Alu 1 283 -30 277 298 136 36 chrY 19210365 19210644 -5502435 + L2 LINE L2 2196 2502 -812 195 152 0 0 chrY 19211769 19211815 -5501264 + T-rich Low_complexity Low_complexity 3 48 0 2611 10 48 0 chrY 19212141 19212435 -5500644 - AluYb8 SINE Alu -10 308 1 1505 188 28 0 chrY 19212757 19213039 -5500040 - AluSg SINE Alu -18 292 3 7717 50 7 5 chrY 19214484 19215485 -5497594 - L1PA4 LINE L1 -894 5252 4250 6823 48 16 0 chrY 19215485 19216354 -5496725 + L1PA4 LINE L1 5262 6144 -11 246 136 0 0 chrY 19216354 19216398 -5496681 + (TA)n Simple_repeat Simple_repeat 2 45 0 5072 135 16 8 chrY 19216399 19217236 -5495843 + L1MA2 LINE L1 5329 6171 -133 2014 67 75 0 chrY 19218025 19218293 -5494786 + AluY SINE Alu 1 288 -23 349 274 21 0 chrY 19218608 19218703 -5494376 + FLAM_C SINE Alu 13 109 -24 314 149 15 45 chrY 19218715 19218782 -5494297 - MER1B DNA MER1_type -13 316 252 1349 181 49 11 chrY 19218928 19219193 -5493886 - MER1B DNA MER1_type -64 275 1 245 140 237 32 chrY 19219193 19219286 -5493793 + L1MA7 LINE L1 6100 6211 -80 673 249 25 38 chrY 19219299 19219536 -5493543 + AluJb SINE Alu 1 234 -78 204 200 0 0 chrY 19220039 19220084 -5492995 + (TA)n Simple_repeat Simple_repeat 1 45 0 25 95 0 0 chrY 19220089 19220163 -5492916 + AT_rich Low_complexity Low_complexity 1 74 0 487 97 0 0 chrY 19222333 19222395 -5490684 + Alu SINE Alu 17 78 -233 24 0 0 0 chrY 19222613 19222637 -5490442 + AT_rich Low_complexity Low_complexity 1 24 0 1670 134 0 0 chrY 19223019 19223257 -5489822 - AluSc SINE Alu -45 264 27 962 247 34 51 chrY 19223436 19223732 -5489347 - AluJo SINE Alu -11 291 1 26 30 0 0 chrY 19225061 19225094 -5487985 + AT_rich Low_complexity Low_complexity 1 33 0 1153 269 206 12 chrY 19225240 19225910 -5487169 - L1MB4 LINE L1 -4 6176 5377 295 102 51 0 chrY 19225916 19225975 -5487104 + AluSp/q SINE Alu 242 303 0 1213 212 77 4 chrY 19226855 19227129 -5485950 - AluSg SINE Alu -12 298 5 1435 212 20 0 chrY 19227638 19227930 -5485149 + AluJo SINE Alu 3 300 -12 458 250 79 21 chrY 19228197 19228337 -5484742 - MLT1A1 LTR MaLR -2 363 216 1745 162 24 3 chrY 19228338 19228503 -5484576 - AluSc SINE Alu -6 303 128 1322 25 31 0 chrY 19228503 19228666 -5484413 - L1PA4 LINE L1 -2 6153 5986 1745 162 24 3 chrY 19228666 19228797 -5484282 - AluSc SINE Alu -181 128 1 261 322 116 20 chrY 19228799 19228945 -5484134 - MLT1A1 LTR MaLR -141 233 74 553 283 52 61 chrY 19228948 19229283 -5483796 - MER31-int LTR ERV1 -258 5823 4375 373 225 22 0 chrY 19229358 19229447 -5483632 - MER31-int LTR ERV1 -721 4215 4125 340 199 58 6 chrY 19229460 19229631 -5483448 + (TA)n Simple_repeat Simple_repeat 1 180 0 1107 198 4 68 chrY 19229659 19229907 -5483172 - AluJb SINE Alu -80 232 1 1004 270 46 0 chrY 19229907 19230211 -5482868 - MER31-int LTR ERV1 -805 4131 3814 464 196 64 69 chrY 19230255 19230428 -5482651 + AluJb SINE Alu 63 234 -78 348 127 0 0 chrY 19230941 19230996 -5482083 + (CA)n Simple_repeat Simple_repeat 2 56 0 370 190 20 50 chrY 19230996 19231096 -5481983 + (TA)n Simple_repeat Simple_repeat 1 97 0 211 182 114 0 chrY 19232652 19232696 -5480383 + L2 LINE L2 3212 3260 -12 2178 67 0 25 chrY 19234816 19235100 -5477979 + AluY SINE Alu 8 305 0 190 0 0 0 chrY 19235100 19235121 -5477958 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1584 150 16 4 chrY 19235855 19236102 -5476977 - AluSc SINE Alu -45 264 15 933 270 27 40 chrY 19236269 19236565 -5476514 - AluJo SINE Alu -10 292 1 25 65 0 0 chrY 19237551 19237597 -5475482 + AT_rich Low_complexity Low_complexity 1 46 0 237 182 36 0 chrY 19238117 19238172 -5474907 - L1MB5 LINE L1 -15 6159 6103 644 167 79 0 chrY 19238306 19238420 -5474659 - AluJb SINE Alu -189 123 1 1411 239 40 40 chrY 19238420 19238876 -5474203 - MER31-int LTR ERV1 -805 4131 3676 1837 182 0 0 chrY 19238981 19239278 -5473801 - AluSx SINE Alu -15 297 1 1973 251 68 33 chrY 19239339 19240357 -5472722 - MER31-int LTR ERV1 -3570 1366 287 717 167 11 22 chrY 19240398 19240578 -5472501 + (CAGAGA)n Simple_repeat Simple_repeat 3 180 0 299 253 21 32 chrY 19241753 19241848 -5471231 - MER31-int LTR ERV1 -4646 290 197 207 0 0 0 chrY 19242674 19242697 -5470382 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 236 294 73 0 chrY 19243197 19243265 -5469814 + L1M3de LINE L1 1419 1491 -5638 229 302 0 19 chrY 19243287 19243340 -5469739 + L1M3de LINE L1 277 328 -6325 2200 300 47 51 chrY 19243627 19244760 -5468319 + L1M3de LINE L1 924 2051 -4602 22 35 0 0 chrY 19244771 19244800 -5468279 + AT_rich Low_complexity Low_complexity 1 29 0 1656 144 70 3 chrY 19244800 19245085 -5467994 + AluSx SINE Alu 1 304 -8 1678 284 116 45 chrY 19245115 19245851 -5467228 + L1M3de LINE L1 1 788 -6421 889 277 10 69 chrY 19245867 19246271 -5466808 + L1M3de LINE L1 1553 1932 -5277 439 320 133 32 chrY 19246284 19246684 -5466395 - L1MEc LINE L1 -5918 478 39 1067 204 133 11 chrY 19247027 19247291 -5465788 - AluSg SINE Alu -2 298 3 1309 311 72 5 chrY 19247518 19248145 -5464934 - LTR65 LTR ERV1 0 669 1 20009 46 2 0 chrY 19248437 19251710 -5461369 - L1PA3 LINE L1 -3 6152 2875 4777 161 13 18 chrY 19251740 19252577 -5460502 - LTR19B-int LTR ERV1 -3625 1961 1129 2455 197 8 20 chrY 19252564 19253464 -5459615 - LTR19B-int LTR ERV1 -4666 920 2 * 1514 174 15 0 chrY 19253465 19253735 -5459344 - LTR19B LTR ERV1 0 580 307 2371 105 14 0 chrY 19253742 19254093 -5458986 - THE1-int LTR MaLR -1224 356 1 39 92 0 0 chrY 19254362 19254471 -5458608 + AT_rich Low_complexity Low_complexity 1 109 0 775 330 60 22 chrY 19254806 19255176 -5457903 - MLT1J LTR MaLR -109 402 19 340 288 110 0 chrY 19256272 19256418 -5456661 + LTR67 LTR ERVL 388 549 -8 2195 99 0 16 chrY 19256454 19256768 -5456311 + AluY SINE Alu 1 309 -2 21 36 0 0 chrY 19256917 19256945 -5456134 + AT_rich Low_complexity Low_complexity 1 28 0 1648 143 83 4 chrY 19257242 19257507 -5455572 + AluSg SINE Alu 1 286 -24 25 51 0 0 chrY 19257863 19257902 -5455177 + AT_rich Low_complexity Low_complexity 1 39 0 2349 80 3 0 chrY 19258600 19258902 -5454177 + AluY SINE Alu 2 304 -7 277 261 42 0 chrY 19259299 19259418 -5453661 - L1M4 LINE L1 -1542 4604 4481 26 93 0 0 chrY 19259460 19259535 -5453544 + AT_rich Low_complexity Low_complexity 1 75 0 5968 101 5 0 chrY 19260025 19261373 -5451706 - L1PA7 LINE L1 -8 6146 4794 541 70 42 48 chrY 19261400 19261758 -5451321 + (TA)n Simple_repeat Simple_repeat 1 355 0 183 189 6 61 chrY 19261804 19261984 -5451095 + (TA)n Simple_repeat Simple_repeat 2 171 0 213 168 0 78 chrY 19262057 19262236 -5450843 + (TA)n Simple_repeat Simple_repeat 2 166 0 607 84 0 116 chrY 19262253 19263346 -5449733 + (TA)n Simple_repeat Simple_repeat 1 965 0 476 116 0 76 chrY 19263359 19263916 -5449163 + (TA)n Simple_repeat Simple_repeat 1 514 0 6928 140 29 1 chrY 19263916 19265084 -5447995 - L1PA7 LINE L1 -1349 4797 3597 797 215 32 0 chrY 19265084 19265242 -5447837 - AluSg/x SINE Alu -16 296 134 2387 67 0 13 chrY 19265243 19265556 -5447523 - AluYb8 SINE Alu -4 314 6 877 106 16 0 chrY 19265743 19265866 -5447213 + Alu SINE Alu 167 291 -19 1760 142 15 61 chrY 19266811 19267141 -5445938 + MER52C LTR ERV1 964 1278 0 26 50 0 0 chrY 19267313 19267353 -5445726 + AT_rich Low_complexity Low_complexity 1 40 0 190 70 0 47 chrY 19268323 19268366 -5444713 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 398 331 112 45 chrY 19268467 19268957 -5444122 + L2 LINE L2 2438 2960 -354 415 232 11 0 chrY 19269019 19269114 -5443965 - MLT1D LTR MaLR -67 438 343 2899 185 32 0 chrY 19269804 19270366 -5442713 - LTR22 LTR ERVK 0 580 1 40584 163 12 9 chrY 19270367 19277141 -5435938 - HERVK22 LTR ERVK 0 6837 46 3414 99 2 0 chrY 19277143 19277853 -5435226 - L1P2 LINE L1 -422 5732 5021 616 108 0 0 chrY 19277853 19277936 -5435143 - LTR12 LTR ERV1 0 714 632 * 952 132 26 0 chrY 19277932 19278084 -5434995 - HERV17 LTR ERV1 -4349 4050 3895 1273 117 0 42 chrY 19278084 19278297 -5434782 - HERV17 LTR ERV1 -571 7828 7625 * 1839 170 67 50 chrY 19278294 19279010 -5434069 - HERV17 LTR ERV1 -5156 1740 983 * 19608 124 17 6 chrY 19279004 19283880 -5429199 - HERV17 LTR ERV1 -3425 4974 1 4526 112 137 8 chrY 19283880 19284612 -5428467 - LTR12 LTR ERV1 0 826 1 688 148 0 0 chrY 19284613 19284728 -5428351 - L1P2 LINE L1 -1123 5023 4909 22 35 0 0 chrY 19285811 19285840 -5427239 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chrY 19286828 19286849 -5426230 + AT_rich Low_complexity Low_complexity 1 21 0 2578 165 61 8 chrY 19287257 19287735 -5425344 - MER1A DNA MER1_type -5 524 22 252 100 0 0 chrY 19288590 19288630 -5424449 + (TTG)n Simple_repeat Simple_repeat 2 41 0 602 174 0 7 chrY 19289096 19289245 -5423834 + CT-rich Low_complexity Low_complexity 1 148 0 28 61 0 0 chrY 19290635 19290684 -5422395 + AT_rich Low_complexity Low_complexity 1 49 0 1590 208 13 0 chrY 19291051 19291067 -5422012 - AluSx SINE Alu -9 303 289 608 0 14 0 chrY 19291067 19291139 -5421940 + (TA)n Simple_repeat Simple_repeat 2 74 0 1590 208 13 0 chrY 19291139 19291420 -5421659 - AluSx SINE Alu -23 289 2 1988 143 13 7 chrY 19292048 19292530 -5420549 + AluY SINE Alu 1 484 0 299 64 0 21 chrY 19293901 19293948 -5419131 + (TTTTG)n Simple_repeat Simple_repeat 3 48 0 660 132 0 0 chrY 19295307 19295413 -5417666 + (TTCC)n Simple_repeat Simple_repeat 4 109 0 22 35 0 0 chrY 19295928 19295957 -5417122 + AT_rich Low_complexity Low_complexity 1 29 0 2891 9 0 6 chrY 19296241 19296561 -5416518 - AluYb8 SINE Alu 0 318 1 29 83 0 10 chrY 19297148 19297176 -5415903 + AT_rich Low_complexity Low_complexity 1 28 -67 1877 127 3 18 chrY 19297176 19297459 -5415620 + AluSc SINE Alu 9 287 -22 29 83 0 10 chrY 19297459 19297526 -5415553 + AT_rich Low_complexity Low_complexity 28 95 0 1889 103 0 74 chrY 19297710 19298022 -5415057 + AluY SINE Alu 1 289 -22 306 322 0 0 chrY 19298046 19298164 -5414915 + L1M4 LINE L1 5416 5533 -641 255 140 0 0 chrY 19298557 19298607 -5414472 + (TA)n Simple_repeat Simple_repeat 2 51 0 488 310 7 17 chrY 19298823 19298999 -5414080 - MIR SINE MIR -25 237 61 3506 117 37 5 chrY 19299243 19299805 -5413274 + LTR19B LTR ERV1 1 580 0 386 265 44 34 chrY 19299889 19300093 -5412986 + L1M4 LINE L1 2260 2465 -3681 741 279 124 54 chrY 19300159 19300604 -5412475 + MLT2B1 LTR ERVL 5 480 -40 326 304 0 6 chrY 19300604 19300775 -5412304 + (TA)n Simple_repeat Simple_repeat 2 171 0 315 325 125 29 chrY 19302865 19303145 -5409934 + L2 LINE L2 2196 2502 -812 196 324 27 27 chrY 19304382 19304456 -5408623 - MER5A DNA MER1_type -73 116 43 446 345 40 27 chrY 19304808 19305107 -5407972 + L1ME LINE L1 5257 5559 -605 31 0 0 0 chrY 19305183 19305214 -5407865 + AT_rich Low_complexity Low_complexity 1 31 0 28 0 0 0 chrY 19305347 19305375 -5407704 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chrY 19305467 19305496 -5407583 + AT_rich Low_complexity Low_complexity 1 29 0 26 30 0 0 chrY 19307109 19307142 -5405937 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chrY 19307440 19307461 -5405618 + AT_rich Low_complexity Low_complexity 1 21 0 3367 160 56 35 chrY 19307652 19307903 -5405176 + L1PA16 LINE L1 5357 5601 -565 2522 46 0 7 chrY 19307903 19308206 -5404873 + AluY SINE Alu 1 301 -10 3367 160 56 35 chrY 19308206 19308746 -5404333 + L1PA16 LINE L1 5601 6164 -2 2964 39 0 3 chrY 19309956 19310339 -5402740 - L1P LINE L1 -1077 5069 4688 5608 5 0 0 chrY 19310339 19310958 -5402121 + L1PA2 LINE L1 5532 6151 -4 238 24 0 49 chrY 19310961 19311002 -5402077 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 614 219 0 0 chrY 19311905 19312024 -5401055 + MER41E LTR ERV1 1 119 -393 2635 138 48 115 chrY 19312412 19313142 -5399937 - LTR1 LTR ERV1 -104 681 1 525 233 15 94 chrY 19313805 19314007 -5399072 + AluJo SINE Alu 12 197 -115 2205 118 3 22 chrY 19320635 19320950 -5392129 + AluY SINE Alu 1 309 -2 316 230 88 26 chrY 19321066 19321179 -5391900 + MLT1F LTR MaLR 386 505 -37 1315 224 31 3 chrY 19321729 19322023 -5391056 + AluSx SINE Alu 1 302 0 1271 237 3 3 chrY 19322072 19322201 -5390878 + AluSx SINE Alu 5 133 -179 270 0 0 0 chrY 19322201 19322231 -5390848 + (TA)n Simple_repeat Simple_repeat 2 31 0 1271 237 3 3 chrY 19322231 19322388 -5390691 + AluSx SINE Alu 132 291 -21 629 107 33 8 chrY 19322413 19322535 -5390544 + GA-rich Low_complexity Low_complexity 2 126 0 453 225 0 0 chrY 19322562 19322682 -5390397 + GA-rich Low_complexity Low_complexity 1 120 0 22 0 0 0 chrY 19322684 19322706 -5390373 + AT_rich Low_complexity Low_complexity 1 22 0 923 202 5 0 chrY 19323329 19323532 -5389547 + L1PA16 LINE L1 5784 5987 -179 337 321 125 29 chrY 19324158 19324438 -5388641 - L2 LINE L2 -812 2502 2196 1910 152 0 0 chrY 19325149 19325432 -5387647 - AluSq SINE Alu -30 283 1 1658 186 3 0 chrY 19325729 19326014 -5387065 + AluSx SINE Alu 1 286 -26 376 296 99 104 chrY 19328992 19329655 -5383424 + L1M2 LINE L1 713 1372 -5477 550 224 9 0 chrY 19331115 19331222 -5381857 + FLAM_C SINE Alu 3 110 -33 260 188 0 31 chrY 19331233 19331297 -5381782 - MER1B DNA MER1_type -16 317 256 349 147 0 44 chrY 19331445 19331513 -5381566 - MER1B DNA MER1_type -64 275 211 824 235 45 9 chrY 19331703 19331821 -5381258 + AluJb SINE Alu 2 114 -198 303 28 0 0 chrY 19331821 19331857 -5381222 + (CA)n Simple_repeat Simple_repeat 1 36 0 824 235 45 9 chrY 19331857 19331959 -5381120 + AluJb SINE Alu 114 230 -82 2015 137 7 3 chrY 19333831 19334138 -5378941 + AluSc SINE Alu 1 308 -1 203 254 51 17 chrY 19334193 19334252 -5378827 - L3 LINE CR1 -1407 170 110 1954 143 3 0 chrY 19334607 19334908 -5378171 - AluSc SINE Alu -3 306 5 1639 181 14 4 chrY 19336905 19337218 -5375861 + AluSg SINE Alu 1 316 0 25 31 0 0 chrY 19337503 19337535 -5375544 + AT_rich Low_complexity Low_complexity 1 32 0 818 252 32 53 chrY 19338650 19338932 -5374147 - AluJo SINE Alu -36 276 1 27 0 0 0 chrY 19339040 19339067 -5374012 + AT_rich Low_complexity Low_complexity 1 27 0 1643 252 154 20 chrY 19340423 19341188 -5371891 - L1MB4 LINE L1 0 6180 5313 29 0 0 0 chrY 19341231 19341260 -5371819 + AT_rich Low_complexity Low_complexity 1 29 0 4596 57 0 2 chrY 19341260 19341840 -5371239 - L1PA4 LINE L1 -7 6148 5570 705 234 25 42 chrY 19341967 19342257 -5370822 - L1M4 LINE L1 -584 5600 5306 1357 202 32 7 chrY 19344205 19344487 -5368592 - AluSg SINE Alu -21 289 1 1403 208 4 8 chrY 19344956 19345220 -5367859 + AluSx SINE Alu 3 265 -47 404 226 38 4 chrY 19345231 19345375 -5367704 - L1MA4 LINE L1 -159 6141 5995 234 243 57 0 chrY 19345365 19345435 -5367644 + L1MA4 LINE L1 6216 6289 -11 * 23 33 0 0 chrY 19345435 19345465 -5367614 + AT_rich Low_complexity Low_complexity 1 30 0 418 342 69 28 chrY 19345474 19345957 -5367122 + L1M3d LINE L1 605 1436 -5217 2045 138 7 3 chrY 19345987 19346291 -5366788 - AluSx SINE Alu -7 305 1 1543 200 48 55 chrY 19346608 19347043 -5366036 + MSTB1 LTR MaLR 1 432 0 230 312 18 37 chrY 19347050 19347159 -5365920 + L1M3de LINE L1 649 755 -5898 1541 184 3 33 chrY 19347247 19347546 -5365533 - AluSg SINE Alu -20 290 1 918 333 73 32 chrY 19347646 19347770 -5365309 + L1M3b LINE L1 64 182 -6099 2450 82 0 0 chrY 19347770 19348076 -5365003 - AluY SINE Alu -5 306 1 918 333 73 32 chrY 19348076 19348474 -5364605 + L1M3b LINE L1 182 607 -5674 245 214 18 0 chrY 19349117 19349173 -5363906 - L1MC/D LINE L1 -1999 5809 5753 237 83 0 0 chrY 19349181 19349217 -5363862 + (CA)n Simple_repeat Simple_repeat 2 37 0 302 317 10 10 chrY 19349232 19349333 -5363746 - MLT1E LTR MaLR -132 461 361 442 282 113 7 chrY 19349450 19349592 -5363487 + FRAM SINE Alu 2 158 -8 572 111 10 0 chrY 19350210 19350309 -5362770 + (TTCC)n Simple_repeat Simple_repeat 4 103 0 1462 205 0 27 chrY 19350328 19350621 -5362458 - AluSx SINE Alu -23 289 5 1462 213 3 0 chrY 19350669 19350974 -5362105 - AluSx SINE Alu -6 306 1 353 246 102 73 chrY 19351440 19351825 -5361254 - MLT1F LTR MaLR -27 515 151 2431 70 0 10 chrY 19355251 19355553 -5357526 + AluY SINE Alu 1 299 -12 792 234 124 53 chrY 19355879 19356161 -5356918 + AluJo SINE Alu 11 312 0 265 275 88 0 chrY 19357085 19357165 -5355914 + LTR33A LTR ERVL 102 188 -335 3098 143 67 71 chrY 19357336 19358055 -5355024 + LTR1 LTR ERV1 1 716 -69 605 219 0 0 chrY 19358410 19358524 -5354555 - MER41E LTR ERV1 -393 119 6 23 92 0 0 chrY 19359612 19359677 -5353402 + AT_rich Low_complexity Low_complexity 1 65 0 21 0 0 0 chrY 19360617 19360638 -5352441 + AT_rich Low_complexity Low_complexity 1 21 0 1875 199 18 0 chrY 19360638 19361025 -5352054 - L1PA16 LINE L1 -2 6164 5771 640 56 9 28 chrY 19361025 19361132 -5351947 + (TTTTA)n Simple_repeat Simple_repeat 1 105 0 42713 36 21 1 chrY 19361132 19367141 -5345938 - L1PA2 LINE L1 -24 6131 1 1962 156 50 33 chrY 19367142 19367564 -5345515 - L1PA16 LINE L1 -381 5785 5357 22 35 0 0 chrY 19367712 19367741 -5345338 + AT_rich Low_complexity Low_complexity 1 29 0 30 45 0 0 chrY 19367881 19367925 -5345154 + AT_rich Low_complexity Low_complexity 1 44 0 25 31 0 0 chrY 19368078 19368110 -5344969 + AT_rich Low_complexity Low_complexity 1 32 0 26 50 0 0 chrY 19369842 19369882 -5343197 + AT_rich Low_complexity Low_complexity 1 40 0 282 294 43 43 chrY 19370157 19370412 -5342667 - L1ME LINE L1 -651 5511 5257 301 310 126 49 chrY 19372022 19372348 -5340731 - L2 LINE L2 -768 2546 2196 373 329 90 43 chrY 19373711 19373998 -5339081 - L1MC4a LINE L1 -170 5951 5652 192 152 0 0 chrY 19374492 19374525 -5338554 + (CA)n Simple_repeat Simple_repeat 2 34 0 899 281 109 59 chrY 19374527 19374968 -5338111 - MLT2B1 LTR ERVL -48 472 10 389 282 47 43 chrY 19375060 19375315 -5337764 - L1M4 LINE L1 -3681 2465 2210 3447 122 35 7 chrY 19375352 19375916 -5337163 - LTR19B LTR ERV1 0 580 1 21 100 0 0 chrY 19376012 19376082 -5336997 + AT_rich Low_complexity Low_complexity 1 70 0 542 284 87 11 chrY 19376218 19376401 -5336678 + MIR SINE MIR 41 237 -25 22 0 0 0 chrY 19376470 19376492 -5336587 + AT_rich Low_complexity Low_complexity 1 22 0 249 261 0 0 chrY 19376607 19376722 -5336357 + (TA)n Simple_repeat Simple_repeat 1 115 0 326 263 53 66 chrY 19376978 19377298 -5335781 - L1MC4a LINE L1 -489 5681 5356 21 0 0 0 chrY 19377446 19377467 -5335612 + AT_rich Low_complexity Low_complexity 1 21 0 1785 153 4 0 chrY 19377487 19377768 -5335311 - AluSc SINE Alu -19 290 9 1730 161 24 0 chrY 19378179 19378471 -5334608 + AluSq SINE Alu 1 299 -14 24 0 0 0 chrY 19379149 19379173 -5333906 + AT_rich Low_complexity Low_complexity 1 24 0 344 190 70 50 chrY 19379313 19379413 -5333666 - L1MA9 LINE L1 -10 6179 6078 258 32 0 0 chrY 19380025 19380056 -5333023 + (TG)n Simple_repeat Simple_repeat 2 32 0 22 35 0 0 chrY 19380232 19380261 -5332818 + AT_rich Low_complexity Low_complexity 1 29 0 348 111 0 0 chrY 19380717 19380771 -5332308 + (GGAA)n Simple_repeat Simple_repeat 3 56 0 219 69 0 0 chrY 19382143 19382172 -5330907 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 22 0 0 0 chrY 19383248 19383270 -5329809 + AT_rich Low_complexity Low_complexity 1 22 0 2115 109 6 22 chrY 19383551 19383862 -5329217 - AluY SINE Alu -5 306 1 1554 199 7 4 chrY 19384498 19384779 -5328300 + AluSx SINE Alu 6 287 -25 186 71 0 0 chrY 19384784 19384812 -5328267 + (TA)n Simple_repeat Simple_repeat 1 28 0 2180 115 0 7 chrY 19386507 19386812 -5326267 + AluY SINE Alu 1 303 -8 182 236 0 14 chrY 19386977 19387049 -5326030 + GA-rich Low_complexity Low_complexity 2 72 0 8133 144 18 76 chrY 19387415 19389216 -5323863 - pTR5 LTR ERV1 0 2438 743 201 147 0 0 chrY 19389323 19389357 -5323722 + (CAA)n Simple_repeat Simple_repeat 2 35 0 2738 137 62 6 chrY 19390206 19390673 -5322406 + MER1A DNA MER1_type 31 523 -6 184 320 77 0 chrY 19391811 19391889 -5321190 - L2 LINE L2 -242 3030 2947 201 74 0 0 chrY 19392091 19392118 -5320961 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 3257 100 9 0 chrY 19393206 19394027 -5319052 + L1P2 LINE L1 4909 5734 -420 7656 172 3 7 chrY 19394027 19395410 -5317669 + HERVK22 LTR ERVK 46 1422 -5415 306 159 0 0 chrY 19397499 19397568 -5315511 + CT-rich Low_complexity Low_complexity 2 70 0 2449 241 97 38 chrY 19397576 19398602 -5314477 + MER31-int LTR ERV1 281 1366 -3570 1907 163 10 0 chrY 19398663 19398958 -5314121 + AluSx SINE Alu 1 298 -14 1218 246 44 40 chrY 19399046 19399501 -5313578 + MER31-int LTR ERV1 3675 4131 -805 1127 198 4 68 chrY 19399501 19399749 -5313330 + AluJb SINE Alu 1 232 -80 340 199 58 6 chrY 19399777 19399948 -5313131 + (TA)n Simple_repeat Simple_repeat 1 180 0 347 225 22 0 chrY 19399961 19400050 -5313029 + MER31-int LTR ERV1 4125 4215 -721 470 294 29 58 chrY 19400147 19400460 -5312619 + MER31-int LTR ERV1 4375 4678 -258 1775 162 24 3 chrY 19400611 19400742 -5312337 + AluSc SINE Alu 1 128 -181 1324 25 31 0 chrY 19400742 19400905 -5312174 + L1PA4 LINE L1 5986 6153 -2 1775 162 24 3 chrY 19400905 19401070 -5312009 + AluSc SINE Alu 128 303 -6 416 252 73 8 chrY 19401071 19401194 -5311885 + MLT1A1 LTR MaLR 216 346 -19 1459 212 20 0 chrY 19401478 19401770 -5311309 - AluJo SINE Alu -12 300 3 1251 212 84 0 chrY 19402279 19402553 -5310526 + AluSq SINE Alu 5 301 -2 279 102 51 0 chrY 19403433 19403492 -5309587 - AluSp/q SINE Alu 0 303 242 964 269 206 12 chrY 19403498 19404168 -5308911 + L1MB4 LINE L1 5377 6176 -4 26 30 0 0 chrY 19404314 19404347 -5308732 + AT_rich Low_complexity Low_complexity 1 33 0 965 247 34 51 chrY 19405676 19405972 -5307107 + AluJo SINE Alu 1 291 -11 1677 134 0 0 chrY 19406151 19406389 -5306690 + AluSc SINE Alu 27 264 -45 24 0 0 0 chrY 19406771 19406795 -5306284 + AT_rich Low_complexity Low_complexity 1 24 0 493 97 0 0 chrY 19407013 19407075 -5306004 - Alu SINE Alu -233 78 17 25 95 0 0 chrY 19409245 19409319 -5303760 + AT_rich Low_complexity Low_complexity 1 74 0 204 200 0 0 chrY 19409324 19409369 -5303710 + (TA)n Simple_repeat Simple_repeat 1 45 0 675 236 34 46 chrY 19409872 19410109 -5302970 - AluJb SINE Alu -78 234 1 1251 181 49 11 chrY 19410215 19410480 -5302599 + MER1B DNA MER1_type 1 275 -64 289 149 15 45 chrY 19410626 19410693 -5302386 + MER1B DNA MER1_type 252 316 -13 332 263 21 0 chrY 19410705 19410800 -5302279 - FLAM_C SINE Alu -24 109 13 2005 67 75 0 chrY 19411115 19411383 -5301696 - AluY SINE Alu -23 288 1 4805 136 16 8 chrY 19412172 19413009 -5300070 - L1MA2 LINE L1 -133 6171 5329 246 136 0 0 chrY 19413010 19413054 -5300025 + (TA)n Simple_repeat Simple_repeat 2 45 0 6535 48 16 0 chrY 19413054 19413923 -5299156 - L1PA4 LINE L1 -11 6144 5262 7361 51 7 5 chrY 19413923 19414924 -5298155 + L1PA4 LINE L1 4250 5252 -894 1520 188 28 0 chrY 19416369 19416651 -5296428 + AluSg SINE Alu 3 292 -18 2606 10 48 0 chrY 19416973 19417267 -5295812 + AluYb8 SINE Alu 1 308 -10 195 152 0 0 chrY 19417593 19417639 -5295440 + A-rich Low_complexity Low_complexity 3 48 0 286 298 136 36 chrY 19418764 19419043 -5294036 - L2 LINE L2 -812 2502 2196 1925 148 0 0 chrY 19419761 19420044 -5293035 - AluSq SINE Alu -30 283 1 1593 170 14 3 chrY 19420415 19420698 -5292381 + AluSx SINE Alu 1 286 -26 21 0 0 0 chrY 19420837 19420858 -5292221 + AT_rich Low_complexity Low_complexity 1 21 0 510 222 0 0 chrY 19425725 19425824 -5287255 + AluJ/FLAM SINE Alu 3 101 -211 253 203 0 31 chrY 19425843 19425907 -5287172 - MER1B DNA MER1_type -16 317 256 371 132 0 44 chrY 19426055 19426123 -5286956 - MER1B DNA MER1_type -64 275 211 942 224 76 22 chrY 19426314 19426591 -5286488 + AluJb SINE Alu 2 293 -9 360 0 0 0 chrY 19427067 19427107 -5285972 + (TG)n Simple_repeat Simple_repeat 2 41 0 21 82 0 0 chrY 19427136 19427185 -5285894 + AT_rich Low_complexity Low_complexity 1 49 0 1706 144 3 25 chrY 19428471 19428793 -5284286 + AluSc SINE Alu 2 317 0 1857 136 7 3 chrY 19429264 19429566 -5283513 - AluSc SINE Alu -6 303 1 1640 176 0 10 chrY 19431583 19431884 -5281195 + AluSg SINE Alu 1 298 -12 21 36 0 0 chrY 19432433 19432461 -5280618 + AT_rich Low_complexity Low_complexity 1 28 0 824 260 25 29 chrY 19433360 19433602 -5279477 - AluJo SINE Alu -71 241 1 1089 260 48 6 chrY 19435064 19435395 -5277684 - L1MB5 LINE L1 -13 6161 5817 815 217 48 33 chrY 19435451 19435723 -5277356 - L1MB5 LINE L1 -490 5690 5415 277 143 0 0 chrY 19435737 19435786 -5277293 + L1PA6 LINE L1 6106 6154 0 261 223 109 9 chrY 19435787 19435930 -5277149 - L1MB5 LINE L1 -746 5423 5254 430 210 20 60 chrY 19436090 19436274 -5276805 - L1M4 LINE L1 -583 5601 5415 293 102 0 0 chrY 19436288 19436337 -5276742 + L1PA6 LINE L1 6106 6154 0 269 206 107 11 chrY 19436361 19436481 -5276598 - L1M4 LINE L1 -772 5397 5254 704 191 120 89 chrY 19436641 19436835 -5276244 - L1M4 LINE L1 -577 5601 5391 305 104 0 0 chrY 19436835 19436883 -5276196 + L1PA6 LINE L1 6106 6153 -1 704 191 120 89 chrY 19436883 19437025 -5276054 - L1M4 LINE L1 -787 5391 5255 518 218 23 45 chrY 19437171 19437367 -5275712 - L1ME LINE L1 -553 5617 5415 278 143 0 0 chrY 19437381 19437430 -5275649 + L1PA6 LINE L1 6106 6154 0 308 219 61 26 chrY 19437431 19437545 -5275534 - L1ME LINE L1 -755 5423 5306 546 222 79 56 chrY 19437730 19438060 -5275019 - L1M4 LINE L1 -577 5601 5254 1162 204 33 11 chrY 19439974 19440248 -5272831 - AluSg SINE Alu -22 288 9 1339 188 4 14 chrY 19440729 19441006 -5272073 + AluSx SINE Alu 14 287 -25 1278 229 7 45 chrY 19441072 19441382 -5271697 - AluJo SINE Alu -3 299 2 513 273 35 0 chrY 19441429 19441601 -5271478 - L1MA4 LINE L1 -124 6176 5999 271 154 17 0 chrY 19441603 19441664 -5271415 + L1MA4 LINE L1 6223 6287 -15 231 188 0 0 chrY 19441676 19441724 -5271355 + CT-rich Low_complexity Low_complexity 3 50 0 1323 212 3 7 chrY 19441753 19442046 -5271033 - AluSx SINE Alu -16 296 5 858 214 0 0 chrY 19442086 19442273 -5270806 - AluSg/x SINE Alu -1 311 125 342 266 66 90 chrY 19442772 19443216 -5269863 - MLT1G LTR MaLR -28 514 102 210 192 0 0 chrY 19443723 19443775 -5269304 + (TA)n Simple_repeat Simple_repeat 1 52 0 22 35 0 0 chrY 19444260 19444289 -5268790 + AT_rich Low_complexity Low_complexity 1 29 0 602 246 144 54 chrY 19445959 19446236 -5266843 + AluJo SINE Alu 11 312 0 197 182 68 0 chrY 19446749 19446793 -5266286 + L2 LINE L2 3263 3309 -4 277 282 89 24 chrY 19447114 19447238 -5265841 + LTR33A LTR ERVL 55 186 -337 2492 177 45 118 chrY 19447410 19448145 -5264934 + LTR1 LTR ERV1 1 681 -104 189 0 0 0 chrY 19448771 19448792 -5264287 + (T)n Simple_repeat Simple_repeat 1 21 0 279 311 55 43 chrY 19450018 19450272 -5262807 + SST1 Satellite centromeric 344 600 -963 297 328 67 71 chrY 19450713 19451134 -5261945 + SST1 Satellite centromeric 1134 1552 -11 222 37 0 0 chrY 19451221 19451248 -5261831 + (T)n Simple_repeat Simple_repeat 1 27 0 201 196 20 0 chrY 19451690 19451741 -5261338 + A-rich Low_complexity Low_complexity 1 52 0 231 36 0 0 chrY 19453226 19453254 -5259825 + (A)n Simple_repeat Simple_repeat 1 28 0 401 319 52 42 chrY 19453756 19454213 -5258866 + SST1 Satellite centromeric 138 599 -964 238 325 0 0 chrY 19454707 19454784 -5258295 + SST1 Satellite centromeric 1163 1239 -324 214 41 20 82 chrY 19455127 19455176 -5257903 + (TG)n Simple_repeat Simple_repeat 1 46 0 229 287 98 28 chrY 19457408 19457551 -5255528 + SST1 Satellite centromeric 1386 1538 -25 180 200 0 0 chrY 19457588 19457648 -5255431 + (TG)n Simple_repeat Simple_repeat 1 60 0 279 0 0 0 chrY 19457863 19457894 -5255185 + (A)n Simple_repeat Simple_repeat 1 31 0 191 164 16 0 chrY 19458649 19458710 -5254369 + (TG)n Simple_repeat Simple_repeat 1 62 0 180 0 0 0 chrY 19458917 19458937 -5254142 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 340 319 57 44 chrY 19459419 19459876 -5253203 + SST1 Satellite centromeric 138 600 -963 312 279 109 24 chrY 19460600 19460765 -5252314 + SST1 Satellite centromeric 1374 1552 -11 540 283 64 70 chrY 19461851 19462364 -5250715 + SST1 Satellite centromeric 118 627 -936 378 42 0 0 chrY 19463266 19463314 -5249765 + (TG)n Simple_repeat Simple_repeat 1 48 0 481 315 86 59 chrY 19464245 19464804 -5248275 + SST1 Satellite centromeric 29 602 -961 272 310 62 21 chrY 19467942 19468087 -5244992 + SST1 Satellite centromeric 1388 1538 -25 202 130 19 19 chrY 19468130 19468184 -5244895 + (TG)n Simple_repeat Simple_repeat 1 54 0 263 342 57 46 chrY 19469238 19469697 -5243382 + SST1 Satellite centromeric 138 601 -962 317 298 93 12 chrY 19470414 19470575 -5242504 + SST1 Satellite centromeric 1386 1559 -4 240 35 0 0 chrY 19470700 19470729 -5242350 + (T)n Simple_repeat Simple_repeat 1 29 0 198 0 0 0 chrY 19473160 19473182 -5239897 + (T)n Simple_repeat Simple_repeat 1 22 0 472 282 92 53 chrY 19474247 19474626 -5238453 + SST1 Satellite centromeric 207 600 -963 289 303 69 14 chrY 19475364 19475509 -5237570 + SST1 Satellite centromeric 1386 1538 -25 199 95 0 79 chrY 19475550 19475613 -5237466 + (TG)n Simple_repeat Simple_repeat 1 58 0 868 154 0 28 chrY 19475691 19475873 -5237206 + CT-rich Low_complexity Low_complexity 3 179 0 320 291 73 55 chrY 19476475 19476764 -5236315 + SST1 Satellite centromeric 309 602 -961 255 274 0 0 chrY 19477252 19477314 -5235765 + SST1 Satellite centromeric 1156 1217 -346 216 110 27 55 chrY 19477629 19477702 -5235377 + (TG)n Simple_repeat Simple_repeat 1 71 0 283 353 57 40 chrY 19478663 19479193 -5233886 + SST1 Satellite centromeric 63 601 -962 234 250 23 0 chrY 19479913 19480001 -5233078 + (TG)n Simple_repeat Simple_repeat 1 90 0 202 267 0 0 chrY 19480094 19480154 -5232925 + (TG)n Simple_repeat Simple_repeat 1 60 0 186 306 0 0 chrY 19480532 19480581 -5232498 - MER5A DNA MER1_type -139 50 2 301 312 99 49 chrY 19481095 19481460 -5231619 + SST1 Satellite centromeric 28 410 -1153 195 186 0 0 chrY 19482576 19482619 -5230460 + (TG)n Simple_repeat Simple_repeat 1 43 0 216 178 0 0 chrY 19484315 19484360 -5228719 + (TG)n Simple_repeat Simple_repeat 1 45 0 261 329 0 0 chrY 19486357 19486427 -5226652 + SST1 Satellite centromeric 1148 1217 -346 283 277 133 42 chrY 19486591 19486757 -5226322 + SST1 Satellite centromeric 1374 1554 -9 280 43 43 0 chrY 19486787 19486833 -5226246 + (TG)n Simple_repeat Simple_repeat 1 48 0 365 324 47 54 chrY 19487850 19488366 -5224713 + SST1 Satellite centromeric 85 596 -967 230 284 70 65 chrY 19490541 19490770 -5222309 + SST1 Satellite centromeric 372 601 -962 210 176 0 0 chrY 19491688 19491739 -5221340 + (TG)n Simple_repeat Simple_repeat 2 52 0 344 294 73 66 chrY 19492840 19493248 -5219831 + SST1 Satellite centromeric 191 601 -962 277 326 0 0 chrY 19493695 19493787 -5219292 + SST1 Satellite centromeric 1148 1239 -324 279 71 0 0 chrY 19494121 19494163 -5218916 + (TG)n Simple_repeat Simple_repeat 1 42 0 268 300 61 71 chrY 19496143 19496536 -5216543 + SST1 Satellite centromeric 1148 1536 -27 7363 57 7 3 chrY 19496668 19497562 -5215517 + MER11D LTR ERVK 1 897 0 182 105 26 0 chrY 19497725 19497763 -5215316 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 323 291 68 51 chrY 19498705 19498997 -5214082 + SST1 Satellite centromeric 228 524 -1039 231 61 0 0 chrY 19499874 19499907 -5213172 + (TG)n Simple_repeat Simple_repeat 2 34 0 404 317 64 52 chrY 19500879 19501412 -5211667 + SST1 Satellite centromeric 63 601 -962 270 303 88 72 chrY 19501896 19502216 -5210863 + SST1 Satellite centromeric 1163 1487 -76 252 158 0 0 chrY 19503130 19503187 -5209892 + (TG)n Simple_repeat Simple_repeat 2 58 0 1959 157 0 0 chrY 19504877 19505171 -5207908 - AluY SINE Alu -17 294 1 244 146 0 0 chrY 19506346 19506387 -5206692 + TAR1 Satellite telomeric 1988 2028 -83 246 81 0 0 chrY 19506599 19506636 -5206443 + (TG)n Simple_repeat Simple_repeat 2 38 0 596 292 68 50 chrY 19507627 19508130 -5204949 + SST1 Satellite centromeric 87 598 -965 205 250 0 0 chrY 19509134 19509194 -5203885 + (TG)n Simple_repeat Simple_repeat 1 60 0 393 313 71 44 chrY 19510173 19510694 -5202385 + SST1 Satellite centromeric 66 600 -963 198 0 0 0 chrY 19512823 19512845 -5200234 + (TG)n Simple_repeat Simple_repeat 1 22 0 422 311 61 54 chrY 19513870 19514330 -5198749 + SST1 Satellite centromeric 138 600 -963 1400 278 71 33 chrY 19514807 19515542 -5197537 + L1M4c LINE L1 1132 1894 -4490 774 246 148 8 chrY 19515545 19515781 -5197298 + AluJo SINE Alu 16 284 -28 21 57 0 0 chrY 19515967 19516002 -5197077 + AT_rich Low_complexity Low_complexity 1 35 0 32684 134 8 19 chrY 19516010 19521893 -5191186 - L1PA6 LINE L1 -326 5828 11 399 121 0 0 chrY 19521931 19521997 -5191082 - Alu SINE Alu 0 302 237 4429 101 2 0 chrY 19522244 19522830 -5190249 - LTR14C LTR ERVK 0 587 1 198 288 181 54 chrY 19523712 19523917 -5189162 + MIR SINE MIR 31 261 -1 23 33 0 0 chrY 19524791 19524821 -5188258 + AT_rich Low_complexity Low_complexity 1 30 0 392 50 0 75 chrY 19525238 19525318 -5187761 + (TTAAA)n Simple_repeat Simple_repeat 3 76 0 236 305 12 12 chrY 19525368 19525450 -5187629 - HAL1 LINE L1 -598 1909 1828 802 249 59 71 chrY 19526710 19527119 -5185960 - L1ME1 LINE L1 -179 5987 5584 2023 235 65 67 chrY 19527904 19528639 -5184440 + MER50 LTR ERV1 1 734 0 2636 236 49 10 chrY 19528808 19529731 -5183348 - L1MB5 LINE L1 -136 6038 5083 760 176 60 55 chrY 19529743 19529925 -5183154 + L1MB3 LINE L1 5371 5553 -621 590 167 9 9 chrY 19529925 19530039 -5183040 + L1MB3 LINE L1 6068 6181 -2 1755 174 3 10 chrY 19530141 19530445 -5182634 - AluY SINE Alu -9 302 1 349 269 46 15 chrY 19530572 19530702 -5182377 - L1MC3 LINE L1 -1767 6018 5885 1862 145 33 33 chrY 19530900 19531232 -5181847 - LTR22B LTR ERVK -34 458 127 402 107 0 0 chrY 19531229 19531285 -5181794 + AluY SINE Alu 80 135 -166 * 641 209 0 39 chrY 19531285 19531464 -5181615 + AluJo/FRAM SINE Alu 137 309 0 1495 216 9 23 chrY 19531464 19531812 -5181267 + L1P LINE L1 2011 2353 -3793 5683 116 35 3 chrY 19531827 19533129 -5179950 + L1PA8 LINE L1 4826 6166 -6 379 212 99 13 chrY 19533649 19533822 -5179257 - L1MC3 LINE L1 -765 5381 5197 1095 74 0 0 chrY 19533824 19533959 -5179120 - AluY SINE Alu -11 300 166 1359 216 0 18 chrY 19533959 19534242 -5178837 - AluSx SINE Alu -30 282 5 437 298 130 22 chrY 19534247 19534663 -5178416 - L1MC3 LINE L1 -958 5188 4728 945 227 107 12 chrY 19534823 19535065 -5178014 - AluJo SINE Alu -47 265 1 340 296 24 29 chrY 19535067 19535273 -5177806 - L1MC3 LINE L1 -1637 4509 4305 2335 162 31 90 chrY 19536323 19536943 -5176136 - MER4B LTR ERV1 -25 754 3 311 253 37 2 chrY 19536943 19537051 -5176028 - MER31-int LTR ERV1 -1316 3620 3521 1009 229 97 8 chrY 19537314 19537581 -5175498 - AluJo SINE Alu -3 309 19 6442 27 0 0 chrY 19537858 19538591 -5174488 - L1PA2 LINE L1 0 6155 5423 788 316 54 14 chrY 19539239 19539811 -5173268 - L1M4 LINE L1 -1747 4897 4303 333 210 18 18 chrY 19540127 19540294 -5172785 + (TTAGGG)n Simple_repeat Simple_repeat 6 172 0 345 168 0 48 chrY 19540357 19540524 -5172555 + (TTAGGG)n Simple_repeat Simple_repeat 6 164 0 289 182 15 23 chrY 19540559 19540691 -5172388 + (TTAGGG)n Simple_repeat Simple_repeat 4 134 0 258 236 0 33 chrY 19540761 19540945 -5172134 + (TTAGGG)n Simple_repeat Simple_repeat 1 177 0 250 223 10 32 chrY 19540958 19541271 -5171808 + (TTAGGG)n Simple_repeat Simple_repeat 1 305 0 192 77 0 0 chrY 19541356 19541382 -5171697 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1514 211 10 0 chrY 19541389 19541687 -5171392 - AluSp SINE Alu -11 302 2 784 336 27 5 chrY 19541792 19542155 -5170924 + MER52A LTR ERV1 923 1249 -506 1484 244 90 24 chrY 19543190 19543882 -5169197 - L1M4 LINE L1 -4568 2078 1329 1696 171 11 0 chrY 19543882 19544146 -5168933 - AluSc SINE Alu -22 287 21 1484 244 90 24 chrY 19544146 19544184 -5168895 - L1M4 LINE L1 -5317 1329 1295 300 257 112 27 chrY 19544302 19544489 -5168590 - L1M4c LINE L1 -3887 2497 2295 21 89 0 0 chrY 19544602 19544658 -5168421 + AT_rich Low_complexity Low_complexity 1 56 0 522 40 27 0 chrY 19545647 19545721 -5167358 + L1PA6 LINE L1 6078 6153 -1 290 276 42 120 chrY 19545806 19546023 -5167056 - L2 LINE L2 -352 2962 2763 278 246 0 0 chrY 19546054 19546111 -5166968 + MER20 DNA MER1_type 90 146 -73 1966 97 9 59 chrY 19546363 19546684 -5166395 + AluY SINE Alu 1 305 -6 505 127 0 0 chrY 19547079 19547158 -5165921 - HERVL LTR ERVL -4866 788 710 2369 274 21 7 chrY 19547159 19547742 -5165337 + MER52A LTR ERV1 1161 1751 -4 516 202 266 0 chrY 19547937 19548061 -5165018 - AluSq SINE Alu -20 293 137 244 256 47 47 chrY 19548119 19548248 -5164831 - MER20 DNA MER1_type 0 219 91 779 172 0 0 chrY 19548370 19548498 -5164581 + AluSq SINE Alu 2 129 -184 318 148 0 0 chrY 19548498 19548552 -5164527 + (CA)n Simple_repeat Simple_repeat 1 54 0 994 194 0 0 chrY 19548561 19548726 -5164353 + AluSq SINE Alu 129 293 -20 36 40 0 0 chrY 19548866 19548916 -5164163 + AT_rich Low_complexity Low_complexity 1 50 0 925 274 90 4 chrY 19549051 19549328 -5163751 - AluSx SINE Alu -11 301 1 29 70 0 0 chrY 19549428 19549485 -5163594 + AT_rich Low_complexity Low_complexity 1 57 0 21 36 0 0 chrY 19552194 19552222 -5160857 + AT_rich Low_complexity Low_complexity 1 28 0 383 266 11 21 chrY 19554320 19554414 -5158665 + AluJb SINE Alu 89 181 -121 25 51 0 0 chrY 19554651 19554690 -5158389 + AT_rich Low_complexity Low_complexity 1 39 0 775 277 20 5 chrY 19554814 19555016 -5158063 + AluJ SINE Alu 1 205 -107 210 160 0 0 chrY 19555065 19555115 -5157964 + (CA)n Simple_repeat Simple_repeat 1 50 0 2018 259 8 4 chrY 19555617 19556099 -5156980 - MER1A DNA MER1_type -18 511 28 379 270 40 10 chrY 19556112 19556212 -5156867 + AluJ SINE Alu 198 300 -2 21 36 0 0 chrY 19556215 19556243 -5156836 + AT_rich Low_complexity Low_complexity 1 28 0 1155 193 9 0 chrY 19557116 19557328 -5155751 + AluSq SINE Alu 81 294 -19 219 288 62 0 chrY 19557333 19557413 -5155666 + MIR SINE MIR 177 261 -1 657 273 36 0 chrY 19557686 19557880 -5155199 - MER2 DNA MER2_type -138 207 7 22 35 0 0 chrY 19557977 19558006 -5155073 + AT_rich Low_complexity Low_complexity 1 29 0 23 78 0 0 chrY 19558800 19558851 -5154228 + AT_rich Low_complexity Low_complexity 1 51 0 1417 220 21 0 chrY 19559445 19559731 -5153348 - AluSx SINE Alu -16 296 5 279 0 0 0 chrY 19560175 19560206 -5152873 + (CA)n Simple_repeat Simple_repeat 2 32 0 183 200 18 27 chrY 19560454 19560564 -5152515 + (TATATG)n Simple_repeat Simple_repeat 6 114 0 259 194 42 0 chrY 19560594 19560814 -5152265 + (TA)n Simple_repeat Simple_repeat 1 229 0 38943 89 2 4 chrY 19560814 19566956 -5146123 - L1PA5 LINE L1 -9 6145 11 1468 204 36 0 chrY 19567534 19567813 -5145266 + AluSx SINE Alu 1 289 -23 1156 299 74 21 chrY 19568381 19568893 -5144186 + L1MDa LINE L1 35 573 -5967 419 340 82 39 chrY 19568873 19569152 -5143927 + L1MDa LINE L1 781 1071 -5469 * 871 219 18 0 chrY 19569175 19569337 -5143742 - MER52C LTR ERV1 0 1278 1114 552 168 35 0 chrY 19569337 19569450 -5143629 + LTR22 LTR ERVK 1 117 -463 1660 189 22 6 chrY 19569467 19569784 -5143295 + LTR22 LTR ERVK 255 576 -4 636 192 149 48 chrY 19569820 19570028 -5143051 - MER52C LTR ERV1 -160 1118 890 1228 278 65 43 chrY 19570032 19570837 -5142242 - L1M4 LINE L1 -942 5204 4383 1688 173 17 7 chrY 19571176 19571471 -5141608 + AluSp SINE Alu 1 298 -15 981 217 29 52 chrY 19571574 19571919 -5141160 - L1MDa LINE L1 -6143 397 61 2480 163 71 4 chrY 19572120 19572599 -5140480 - MER9 LTR ERVK 0 511 1 12385 139 37 44 chrY 19572599 19574759 -5138320 - HERVK9 LTR ERVK 0 5916 3773 7992 141 49 48 chrY 19574750 19575420 -5137659 - HERVK9 LTR ERVK -4419 1497 829 * 201 200 0 83 chrY 19575420 19575480 -5137599 - MER5B DNA MER1_type -69 109 55 7992 141 49 48 chrY 19575480 19576246 -5136833 - HERVK9 LTR ERVK -5087 829 1 2037 184 110 7 chrY 19576246 19576303 -5136776 - MER9 LTR ERVK 0 511 461 315 0 0 0 chrY 19576303 19576338 -5136741 + (CA)n Simple_repeat Simple_repeat 2 36 0 2037 184 110 7 chrY 19576338 19576743 -5136336 - MER9 LTR ERVK -50 461 1 251 164 19 182 chrY 19577963 19578122 -5134957 - MER53 DNA DNA -32 157 25 * 287 197 42 0 chrY 19578064 19578135 -5134944 + MER53 DNA DNA 115 188 -1 245 167 103 0 chrY 19578503 19578581 -5134498 + (ATTTG)n Simple_repeat Simple_repeat 3 88 0 24 32 0 0 chrY 19579059 19579090 -5133989 + AT_rich Low_complexity Low_complexity 1 31 0 1815 136 4 4 chrY 19581402 19581682 -5131397 + AluY SINE Alu 27 306 -5 1040 217 59 88 chrY 19582735 19583109 -5129970 - MLT1A1 LTR MaLR 0 365 3 25 31 0 0 chrY 19583888 19583920 -5129159 + AT_rich Low_complexity Low_complexity 1 32 0 333 0 0 0 chrY 19585446 19585483 -5127596 + (TTA)n Simple_repeat Simple_repeat 2 38 0 1410 184 8 0 chrY 19585483 19585722 -5127357 - AluSg SINE Alu -36 274 34 182 309 100 36 chrY 19585941 19586051 -5127028 + L2 LINE L2 3170 3286 -27 2697 204 68 7 chrY 19586358 19586918 -5126161 - LTR4 LTR ERV1 -2 594 1 13413 158 31 16 chrY 19586918 19589690 -5123389 - HERV3 LTR ERV1 0 8426 5616 29960 175 15 9 chrY 19589692 19595063 -5118016 - HERV3 LTR ERV1 -3024 5402 1 656 216 0 0 chrY 19595064 19595189 -5117890 - LTR4 LTR ERV1 0 596 472 537 322 17 13 chrY 19595227 19595457 -5117622 - L1MDa LINE L1 -6191 349 119 225 301 0 32 chrY 19595823 19595916 -5117163 + MIR SINE MIR 124 213 -49 2386 74 0 7 chrY 19596766 19597065 -5116014 - AluY SINE Alu -14 297 1 328 124 5 240 chrY 19597140 19597357 -5115722 - MER53 DNA DNA -1 188 23 21 0 0 0 chrY 19598166 19598187 -5114892 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chrY 19600189 19600212 -5112867 + AT_rich Low_complexity Low_complexity 1 23 0 837 243 64 94 chrY 19601669 19602043 -5111036 - MLT1A1 LTR MaLR 0 365 3 209 247 11 34 chrY 19604194 19604283 -5108796 + CT-rich Low_complexity Low_complexity 4 90 0 249 109 0 0 chrY 19605008 19605054 -5108025 + (TTTTG)n Simple_repeat Simple_repeat 5 50 0 265 289 60 0 chrY 19606607 19606690 -5106389 + L2 LINE L2 3206 3293 -20 8611 60 3 2 chrY 19607185 19609074 -5104005 - L1PA5 LINE L1 -2 6152 4261 9609 35 0 0 chrY 19609074 19610366 -5102713 - L1P1 LINE L1 -701 5454 4163 1915 122 4 0 chrY 19610366 19610628 -5102451 - AluY SINE Alu -2 309 47 197 234 39 104 chrY 19611183 19611260 -5101819 - MIR SINE MIR -38 224 153 914 148 15 0 chrY 19611483 19611618 -5101461 + AluSx SINE Alu 1 137 -176 14191 96 3 34 chrY 19611620 19613818 -5099261 + L1P LINE L1 7 2137 -4009 5178 66 5 6 chrY 19613807 19614683 -5098396 + L1PA4 LINE L1 5101 5979 -176 * 3504 14 0 5 chrY 19615365 19615779 -5097300 - L1PA2 LINE L1 -377 5778 5365 3182 34 0 0 chrY 19615779 19616156 -5096923 + L1PA2 LINE L1 5776 6155 0 198 0 0 0 chrY 19616163 19616185 -5096894 + (CA)n Simple_repeat Simple_repeat 1 22 0 335 315 54 8 chrY 19616844 19616974 -5096105 + L2 LINE L2 2823 2958 -355 21 36 0 0 chrY 19617948 19617976 -5095103 + AT_rich Low_complexity Low_complexity 1 28 0 380 309 138 20 chrY 19618016 19618262 -5094817 + L1M4 LINE L1 976 1250 -5292 442 120 13 0 chrY 19618274 19618349 -5094730 + LTR15 LTR ERV1 1 76 -417 2055 113 8 7 chrY 19618351 19618559 -5094520 + HERV15 LTR ERV1 6770 6976 -1759 200 33 0 33 chrY 19618559 19618589 -5094490 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2055 113 8 7 chrY 19618589 19619100 -5093979 + HERV15 LTR ERV1 6976 7642 -1093 804 107 16 0 chrY 19619102 19619223 -5093856 + LTR15 LTR ERV1 355 477 -16 2693 168 25 25 chrY 19619892 19620487 -5092592 + L1PA10 LINE L1 5390 5984 -184 863 130 7 0 chrY 19620483 19620621 -5092458 + L1P LINE L1 1 139 -6007 * 17755 54 1 1 chrY 19620621 19623682 -5089397 + L1PA4 LINE L1 3085 6155 0 954 173 60 0 chrY 19623691 19623859 -5089220 + AluSx SINE Alu 120 297 -15 1736 198 71 41 chrY 19623877 19624386 -5088693 - LTR61 LTR ERV1 0 595 72 491 258 0 8 chrY 19624406 19624534 -5088545 - HERV3 LTR ERV1 -17 8409 8283 6254 270 17 17 chrY 19624618 19627300 -5085779 - HERV3 LTR ERV1 -3666 4760 1986 4558 265 40 14 chrY 19627298 19628562 -5084517 - HERV3 LTR ERV1 -6768 1658 363 * 1639 237 0 13 chrY 19628629 19629004 -5084075 - HERV3 LTR ERV1 -8052 374 5 1135 194 40 80 chrY 19629008 19629384 -5083695 - LTR61 LTR ERV1 0 595 235 1685 194 0 25 chrY 19629607 19629927 -5083152 + AluSx SINE Alu 1 312 0 193 304 36 0 chrY 19631618 19631674 -5081405 - MIR SINE MIR -1 261 204 489 227 27 96 chrY 19631691 19631911 -5081168 + MER46C DNA MER2_type 5 209 -129 191 304 157 10 chrY 19631994 19632096 -5080983 - MIR SINE MIR -82 180 64 498 247 145 38 chrY 19632567 19632802 -5080277 - MIR SINE MIR -1 261 2 21 36 0 0 chrY 19634071 19634099 -5078980 + AT_rich Low_complexity Low_complexity 1 28 0 235 342 114 11 chrY 19634846 19635030 -5078049 + L3 LINE CR1 195 397 -1180 243 134 0 45 chrY 19635347 19635414 -5077665 + (TA)n Simple_repeat Simple_repeat 1 64 0 1427 212 10 14 chrY 19635695 19635992 -5077087 + AluSx SINE Alu 1 296 -16 1452 217 11 3 chrY 19636186 19636472 -5076607 - AluJb SINE Alu -24 288 1 372 366 84 36 chrY 19636673 19636982 -5076097 - L2 LINE L2 -5 3267 2944 186 43 0 0 chrY 19637903 19637926 -5075153 + (TAAAAA)n Simple_repeat Simple_repeat 2 24 0 3412 108 28 4 chrY 19638383 19638824 -5074255 + MER9 LTR ERVK 1 457 -54 342 0 0 0 chrY 19638824 19638862 -5074217 + (TG)n Simple_repeat Simple_repeat 1 38 0 3412 108 28 4 chrY 19638862 19638919 -5074160 + MER9 LTR ERVK 457 511 0 3683 111 28 3 chrY 19638919 19639497 -5073582 + HERVK9 LTR ERVK 1 592 -5324 5344 94 1 5 chrY 19639497 19640252 -5072827 + HERVK9 LTR ERVK 1268 2019 -3897 188 322 34 51 chrY 19640385 19640503 -5072576 - L2 LINE L2 -5 3308 3193 241 191 0 0 chrY 19640504 19640546 -5072533 - LTR33 LTR ERVL -2 519 478 * 738 310 118 6 chrY 19640542 19640874 -5072205 - LTR33 LTR ERVL -149 372 4 258 364 93 0 chrY 19640874 19641012 -5072067 - LTR33 LTR ERVL -370 151 1 320 291 60 64 chrY 19641210 19641492 -5071587 - L1MC5 LINE L1 -37 7924 7644 403 275 44 11 chrY 19641590 19641772 -5071307 - L1MC5 LINE L1 -518 7443 7256 438 295 51 27 chrY 19641910 19642246 -5070833 - L1MC5 LINE L1 -742 7219 6876 407 322 60 20 chrY 19643326 19643475 -5069604 - MIR3 SINE MIR -43 165 11 244 287 37 93 chrY 19643630 19643738 -5069341 - MER5B DNA MER1_type -72 106 5 269 154 39 13 chrY 19644600 19644678 -5068401 + GA-rich Low_complexity Low_complexity 1 80 0 258 331 35 55 chrY 19645045 19645190 -5067889 + MIR SINE MIR 65 206 -56 24 53 0 0 chrY 19646398 19646436 -5066643 + AT_rich Low_complexity Low_complexity 1 38 0 237 264 97 0 chrY 19647015 19647087 -5065992 + MIR SINE MIR 86 164 -98 370 408 25 0 chrY 19647512 19647669 -5065410 + L2 LINE L2 3091 3251 -21 197 163 20 0 chrY 19647682 19647731 -5065348 + (TA)n Simple_repeat Simple_repeat 1 50 0 195 203 0 0 chrY 19648818 19648877 -5064202 + (TG)n Simple_repeat Simple_repeat 2 60 0 23 0 0 0 chrY 19648896 19648919 -5064160 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chrY 19648987 19649010 -5064069 + AT_rich Low_complexity Low_complexity 1 23 0 3299 113 11 4 chrY 19649010 19649534 -5063545 - L1MA1 LINE L1 -6 6296 5769 1259 20 0 0 chrY 19649536 19649683 -5063396 - L1PA2 LINE L1 -3 6152 6006 341 94 0 0 chrY 19649683 19649736 -5063343 - L1MA1 LINE L1 -525 5777 5725 405 109 6 14 chrY 19649740 19649832 -5063247 + L1M1 LINE L1 5587 5668 -483 937 266 4 35 chrY 19650545 19650804 -5062275 + AluJo SINE Alu 8 258 -54 2519 66 0 0 chrY 19654140 19654443 -5058636 + AluY SINE Alu 1 303 -8 1176 170 86 116 chrY 19655809 19656273 -5056806 + LTR7 LTR ERV1 1 450 0 347 118 9 55 chrY 19657861 19657971 -5055108 + (TA)n Simple_repeat Simple_repeat 2 106 0 489 99 0 0 chrY 19658462 19658543 -5054536 + (GA)n Simple_repeat Simple_repeat 1 81 0 470 257 129 7 chrY 19658543 19658683 -5054396 - FAM SINE Alu -17 158 2 1009 249 15 15 chrY 19662531 19662824 -5050255 + AluJo SINE Alu 13 305 0 1936 162 7 0 chrY 19662824 19663120 -5049959 + AluSx SINE Alu 1 298 -14 1700 184 0 13 chrY 19664885 19665169 -5047910 + AluSx SINE Alu 1 282 -30 258 32 0 0 chrY 19665169 19665200 -5047879 + (CA)n Simple_repeat Simple_repeat 2 32 0 1700 184 0 13 chrY 19665200 19665224 -5047855 + AluSx SINE Alu 282 305 -7 377 305 119 93 chrY 19667408 19668061 -5045018 + L1M2 LINE L1 472 1141 -5708 485 252 0 9 chrY 19669515 19669622 -5043457 + FLAM_C SINE Alu 13 118 -25 264 122 20 0 chrY 19669625 19669674 -5043405 - MER1B DNA MER1_type -13 316 267 270 108 0 135 chrY 19669838 19669912 -5043167 - MER1B DNA MER1_type -65 274 211 256 161 25 25 chrY 19670059 19670103 -5042976 + L1MA7 LINE L1 6182 6228 -63 696 214 114 68 chrY 19670103 19670383 -5042696 + AluJb SINE Alu 2 294 -8 256 161 25 25 chrY 19670383 19670419 -5042660 + L1MA7 LINE L1 6227 6262 -29 201 245 10 41 chrY 19670870 19670968 -5042111 + (TATG)n Simple_repeat Simple_repeat 2 96 0 2035 133 3 0 chrY 19672729 19673037 -5040042 - AluSc SINE Alu 0 309 1 24 0 0 0 chrY 19675047 19675071 -5038008 + AT_rich Low_complexity Low_complexity 1 24 0 1481 186 7 7 chrY 19675081 19675355 -5037724 + AluSg SINE Alu 5 278 -32 216 0 0 0 chrY 19675355 19675379 -5037700 + (CAAT)n Simple_repeat Simple_repeat 4 27 0 30 0 0 0 chrY 19675648 19675678 -5037401 + AT_rich Low_complexity Low_complexity 1 30 0 1054 262 38 31 chrY 19776976 19777266 -4935813 - AluJo SINE Alu -10 292 1 1055 285 32 6 chrY 19778743 19779059 -4934020 - L1MB5 LINE L1 -13 6161 5838 1253 205 111 18 chrY 19779131 19779526 -4933553 - L1MB5 LINE L1 -495 5685 5254 1215 227 33 4 chrY 19781479 19781779 -4931300 - AluSg SINE Alu 0 308 1 1552 210 11 14 chrY 19782262 19782548 -4930531 + AluSx SINE Alu 3 287 -15 1206 228 0 44 chrY 19782606 19782926 -4930153 - AluJo SINE Alu -5 307 2 525 273 35 0 chrY 19782973 19783145 -4929934 - L1MA4 LINE L1 -124 6176 5999 259 190 11 0 chrY 19783147 19783212 -4929867 + L1MA4 LINE L1 6223 6289 -11 22 35 0 0 chrY 19783212 19783241 -4929838 + AT_rich Low_complexity Low_complexity 1 29 0 405 333 25 42 chrY 19783489 19783773 -4929306 + L1M3de LINE L1 371 658 -5995 1684 124 120 11 chrY 19783773 19784039 -4929040 - AluSg SINE Alu -15 295 1 405 333 25 42 chrY 19784039 19784096 -4928983 + L1M3de LINE L1 658 1436 -5217 1763 206 37 46 chrY 19784377 19784809 -4928270 + MSTB1 LTR MaLR 4 431 -1 1652 176 0 43 chrY 19785021 19785344 -4927735 - AluSc SINE Alu 0 309 1 689 338 54 37 chrY 19785418 19785879 -4927200 + L1M3b LINE L1 42 510 -5771 274 214 8 120 chrY 19786715 19786832 -4926247 + L1P LINE L1 3463 3566 -2580 230 224 20 0 chrY 19786831 19786880 -4926199 - L1MC/D LINE L1 -1999 5809 5760 * 255 325 8 26 chrY 19786918 19787035 -4926044 - MLT1E LTR MaLR -118 475 361 526 271 106 7 chrY 19787153 19787304 -4925775 + FRAM SINE Alu 1 166 0 529 187 15 8 chrY 19787912 19788046 -4925033 + CT-rich Low_complexity Low_complexity 2 136 0 1267 230 0 30 chrY 19788078 19788374 -4924705 - AluSx SINE Alu -21 291 5 195 69 0 0 chrY 19788418 19788447 -4924632 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1325 208 33 0 chrY 19788453 19788727 -4924352 - AluSx SINE Alu -29 283 1 347 265 49 84 chrY 19789182 19789643 -4923436 - MLT1F LTR MaLR -27 515 85 803 58 0 0 chrY 19794613 19794716 -4918363 - L1P3 LINE L1 -622 5532 5430 2095 90 3 16 chrY 19794716 19795036 -4918043 + L1PA6 LINE L1 5837 6154 0 21 82 0 0 chrY 19896941 19896990 -4816089 + AT_rich Low_complexity Low_complexity 1 49 0 22 35 0 0 chrY 19897026 19897055 -4816024 + AT_rich Low_complexity Low_complexity 1 29 0 817 228 141 47 chrY 19898764 19899019 -4814060 + AluJo SINE Alu 11 289 -23 189 39 0 0 chrY 19899574 19899600 -4813479 + L2 LINE L2 3284 3309 -4 230 274 104 67 chrY 19899970 19900105 -4812974 + LTR33A LTR ERVL 102 241 -282 2844 132 48 119 chrY 19900224 19900957 -4812122 + LTR1 LTR ERV1 1 681 -104 690 162 17 0 chrY 19901339 19901456 -4811623 - MER41E LTR ERV1 -393 119 1 3812 173 42 23 chrY 19903559 19904353 -4808726 - L1PA16 LINE L1 -1 6165 5357 35 24 0 0 chrY 19904866 19904908 -4808171 + AT_rich Low_complexity Low_complexity 1 42 0 2286 109 0 3 chrY 19905905 19906209 -4806870 + AluSc SINE Alu 1 303 -6 22 35 0 0 chrY 19906868 19906897 -4806182 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chrY 19907161 19907183 -4805896 + AT_rich Low_complexity Low_complexity 1 22 0 299 314 38 34 chrY 19907303 19907539 -4805540 - L1M2 LINE L1 -653 5511 5281 190 314 29 29 chrY 19907908 19907978 -4805101 + MER5A DNA MER1_type 43 112 -77 225 65 0 0 chrY 19908076 19908107 -4804972 + (CAA)n Simple_repeat Simple_repeat 2 32 0 23 0 0 0 chrY 19909374 19909397 -4803682 + AT_rich Low_complexity Low_complexity 1 23 0 840 111 8 0 chrY 19909408 19909525 -4803554 - AluSc SINE Alu -191 118 1 1734 150 29 0 chrY 19909911 19910191 -4802888 + AluSq SINE Alu 1 288 -25 27 0 0 0 chrY 19910853 19910880 -4802199 + AT_rich Low_complexity Low_complexity 1 27 0 365 200 0 22 chrY 19911041 19911131 -4801948 - L1MA9 LINE L1 -147 6165 6078 1145 66 11 27 chrY 19912449 19912632 -4800447 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 216 0 0 0 chrY 19914044 19914068 -4799011 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1989 124 17 7 chrY 19915447 19915746 -4797333 - AluY SINE Alu 0 311 10 22 35 0 0 chrY 19916133 19916162 -4796917 + AT_rich Low_complexity Low_complexity 1 29 0 1551 197 11 3 chrY 19916388 19916672 -4796407 + AluSx SINE Alu 2 287 -25 23 0 0 0 chrY 19916672 19916695 -4796384 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chrY 19916780 19916809 -4796270 + AT_rich Low_complexity Low_complexity 1 29 0 52 64 0 0 chrY 19917048 19917142 -4795937 + AT_rich Low_complexity Low_complexity 1 94 0 423 0 0 0 chrY 19917153 19917200 -4795879 + (TG)n Simple_repeat Simple_repeat 2 48 0 207 364 8 8 chrY 19918060 19918181 -4794898 + (CAA)n Simple_repeat Simple_repeat 2 122 0 381 218 0 0 chrY 19918595 19918719 -4794360 + GA-rich Low_complexity Low_complexity 1 124 0 201 147 0 0 chrY 19919185 19919219 -4793860 + (CAA)n Simple_repeat Simple_repeat 2 35 0 2043 51 0 0 chrY 19919654 19919910 -4793169 - L1PA4 LINE L1 -1 6154 5899 2813 148 62 6 chrY 19920333 19920800 -4792279 + MER1A DNA MER1_type 31 523 -6 195 42 0 0 chrY 19922225 19922249 -4790830 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 3074 155 29 39 chrY 19922818 19923380 -4789699 + LTR6A LTR ERV1 9 564 0 3221 109 15 0 chrY 19923978 19924791 -4788288 + L1P2 LINE L1 4909 5734 -420 13599 163 3 7 chrY 19924791 19927026 -4786053 + HERVK22 LTR ERVK 46 2271 -4566 1980 183 27 155 chrY 19927026 19927666 -4785413 - LTR6A LTR ERV1 0 564 1 2389 171 2 14 chrY 19927666 19928092 -4784987 + HERVK22 LTR ERVK 2267 2687 -4150 277 30 0 0 chrY 19928098 19928131 -4784948 - HERVK22 LTR ERVK -4734 2103 2071 12885 153 1 6 chrY 19928131 19930221 -4782858 + HERVK22 LTR ERVK 2695 4773 -2064 2687 180 15 26 chrY 19930220 19930831 -4782248 + pTR5 LTR ERV1 742 1345 -1093 * 4092 129 15 128 chrY 19930846 19931773 -4781306 + LTR12 LTR ERV1 5 826 0 7972 164 9 13 chrY 19931773 19933735 -4779344 + HERVK22 LTR ERVK 4770 6835 -2 2888 187 25 3 chrY 19933736 19934304 -4778775 + LTR22 LTR ERVK 1 580 0 310 258 24 32 chrY 19934629 19934813 -4778266 + L1M4b LINE L1 1352 1665 -5282 622 232 7 21 chrY 19934929 19935071 -4778008 + MLT1D LTR MaLR 301 440 -65 429 321 95 34 chrY 19935330 19935626 -4777453 - L2 LINE L2 -583 2731 2418 243 0 0 0 chrY 19935765 19935792 -4777287 + (A)n Simple_repeat Simple_repeat 1 27 0 223 331 91 0 chrY 19936029 19936150 -4776929 + MIR SINE MIR 53 184 -78 36 53 0 0 chrY 19936749 19936806 -4776273 + AT_rich Low_complexity Low_complexity 1 57 0 1319 169 16 93 chrY 19936973 19937286 -4775793 - MER52C LTR ERV1 0 1278 990 1090 96 0 0 chrY 19937387 19937533 -4775546 - AluY SINE Alu -3 308 163 1765 177 6 10 chrY 19937714 19938025 -4775054 + AluSx SINE Alu 1 310 -2 10197 131 8 0 chrY 19938025 19940533 -4772546 + L1PA7 LINE L1 3596 6146 -8 415 225 70 7 chrY 19941119 19941261 -4771818 + L1M4 LINE L1 4457 4607 -1539 2025 140 0 0 chrY 19942737 19943030 -4770049 - AluSp SINE Alu -20 293 1 184 360 70 10 chrY 19943312 19943412 -4769667 + L2 LINE L2 3204 3309 -4 257 314 82 36 chrY 19943525 19943719 -4769360 - LTR67 LTR ERVL -8 549 347 772 311 33 36 chrY 19944678 19944983 -4768096 + MLT1J LTR MaLR 103 406 -105 39 68 0 0 chrY 19945314 19945388 -4767691 + AT_rich Low_complexity Low_complexity 1 74 0 231 118 0 0 chrY 19945657 19945691 -4767388 + THE1A LTR MaLR 322 355 0 2358 96 12 0 chrY 19945691 19946035 -4767044 + THE1A-int LTR MaLR 1 348 -1232 1739 137 14 11 chrY 19946036 19946320 -4766759 + LTR19B LTR ERV1 296 580 0 4112 159 19 38 chrY 19946320 19947193 -4765886 + HERVFH19I LTR ERV1 1 921 -4665 * 4826 148 29 18 chrY 19947179 19948004 -4765075 + HERVFH19I LTR ERV1 1129 1962 -3624 2253 92 0 3 chrY 19948434 19948737 -4764342 - AluY SINE Alu -9 302 1 242 113 42 14 chrY 19949406 19949477 -4763602 + (TTATA)n Simple_repeat Simple_repeat 5 77 0 26 30 0 0 chrY 19949949 19949982 -4763097 + AT_rich Low_complexity Low_complexity 1 33 0 305 242 119 88 chrY 19950293 19950487 -4762592 + LTR4 LTR ERV1 1 200 -396 677 234 46 50 chrY 19950659 19950920 -4762159 + LTR4 LTR ERV1 337 596 0 1295 208 30 66 chrY 19951039 19951142 -4761937 + LTR19B-int LTR ERV1 1746 1851 -3366 1816 168 0 0 chrY 19951142 19951451 -4761628 + AluSc SINE Alu 1 309 0 1295 208 30 66 chrY 19951451 19951741 -4761338 + LTR19B-int LTR ERV1 1851 2126 -3091 * 5381 210 37 4 chrY 19951739 19953016 -4760063 + LTR19B-int LTR ERV1 3336 4593 -422 1603 185 67 74 chrY 19953011 19953250 -4759829 + LTR19B-int LTR ERV1 4718 4957 -629 * 454 49 0 0 chrY 19953250 19953311 -4759768 - AluY SINE Alu -7 305 245 1603 185 67 74 chrY 19953311 19953552 -4759527 + LTR19B-int LTR ERV1 4957 5254 -332 1291 156 4 31 chrY 19953548 19953773 -4759306 + LTR19B-int LTR ERV1 5367 5585 -1 * 2069 147 34 0 chrY 19953774 19954128 -4758951 + LTR19B LTR ERV1 1 366 -214 3241 110 17 4 chrY 19954128 19954608 -4758471 + LTR15 LTR ERV1 1 486 -7 1343 153 9 0 chrY 19954615 19954831 -4758248 + LTR19B LTR ERV1 363 580 0 321 351 90 64 chrY 19954939 19955406 -4757673 - L2 LINE L2 -4 3309 2831 1780 162 17 3 chrY 19955792 19956094 -4756985 + AluSp SINE Alu 1 306 -7 437 273 30 8 chrY 19957145 19957277 -4755802 + MIR3 SINE MIR 66 200 -8 256 360 30 0 chrY 19957440 19957540 -4755539 - MIR SINE MIR -130 132 30 1400 185 17 101 chrY 19958329 19958734 -4754345 - MLT1B LTR MaLR -19 371 1 22 35 0 0 chrY 19959323 19959352 -4753727 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chrY 19959564 19959589 -4753490 + AT_rich Low_complexity Low_complexity 1 25 0 2074 103 6 44 chrY 19959905 19960226 -4752853 - AluY SINE Alu 0 311 3 219 239 28 70 chrY 19960335 19960406 -4752673 - MIR3 SINE MIR -38 170 103 27 29 0 0 chrY 19960936 19960970 -4752109 + AT_rich Low_complexity Low_complexity 1 34 0 2151 95 0 3 chrY 19961156 19961460 -4751619 + AluY SINE Alu 1 303 -8 186 71 0 0 chrY 19962203 19962231 -4750848 + (A)n Simple_repeat Simple_repeat 1 28 0 640 294 34 21 chrY 19962232 19962470 -4750609 + MLT1E LTR MaLR 35 275 -192 271 195 37 24 chrY 19962481 19962563 -4750516 + (TA)n Simple_repeat Simple_repeat 2 84 0 377 348 33 22 chrY 19962770 19962954 -4750125 + L2 LINE L2 294 479 -2835 240 326 68 14 chrY 19963008 19963155 -4749924 + L2 LINE L2 639 793 -2521 1484 214 3 24 chrY 19963177 19963471 -4749608 - AluJo SINE Alu -14 288 1 1123 274 39 28 chrY 19963584 19963945 -4749134 + MLT1E LTR MaLR 227 591 -2 422 314 0 0 chrY 19964838 19964978 -4748101 + MIR SINE MIR 98 237 -25 204 342 51 44 chrY 19965057 19965215 -4747864 - MIR SINE MIR -56 206 48 2224 93 0 20 chrY 19965810 19966110 -4746969 - AluY SINE Alu -17 294 1 337 268 12 0 chrY 19968455 19968537 -4744542 - L2 LINE L2 0 3313 3231 305 334 59 59 chrY 19968699 19969055 -4744024 + HAL1b LINE L1 304 659 -689 216 0 0 0 chrY 19969109 19969133 -4743946 + (CA)n Simple_repeat Simple_repeat 2 25 0 793 207 0 30 chrY 19969137 19969306 -4743773 + FRAM SINE Alu 7 170 -6 22 35 0 0 chrY 19969338 19969367 -4743712 + AT_rich Low_complexity Low_complexity 1 29 0 1351 225 7 14 chrY 19969367 19969660 -4743419 - AluSx SINE Alu -21 291 1 1460 270 87 11 chrY 19970246 19970868 -4742211 + LTR65 LTR ERV1 1 669 0 2314 84 7 0 chrY 19971096 19971405 -4741674 + AluY SINE Alu 1 311 0 195 42 0 0 chrY 19971424 19971448 -4741631 + (T)n Simple_repeat Simple_repeat 1 24 0 2175 94 3 25 chrY 19971453 19971771 -4741308 - AluY SINE Alu 0 311 1 322 69 35 0 chrY 19971773 19971831 -4741248 + (TTTTTA)n Simple_repeat Simple_repeat 2 61 0 1291 193 73 11 chrY 19971833 19972108 -4740971 + AluSg SINE Alu 2 293 -17 430 325 144 45 chrY 19972529 19972926 -4740153 + L1MEc LINE L1 43 478 -5918 939 256 13 76 chrY 19972939 19973333 -4739746 - L1M3de LINE L1 -5277 1456 1088 * 1634 266 98 71 chrY 19973305 19974120 -4738959 - L1M2b LINE L1 -6372 837 1 1787 145 7 24 chrY 19974166 19974463 -4738616 - AluSx SINE Alu -20 292 1 2555 280 42 55 chrY 19974500 19975633 -4737446 - L1M3de LINE L1 -4602 2051 286 244 360 27 14 chrY 19975668 19975815 -4737264 + MER88 LTR ERVL 213 361 -103 265 299 62 21 chrY 19976211 19976308 -4736771 - L1M3de LINE L1 -5638 1491 1391 311 323 0 0 chrY 19976311 19976404 -4736675 - L1M3de LINE L1 -6284 845 753 24 32 0 0 chrY 19976901 19976932 -4736147 + AT_rich Low_complexity Low_complexity 1 31 0 270 247 47 24 chrY 19978768 19978853 -4734226 + (TCTCTG)n Simple_repeat Simple_repeat 2 88 0 2660 242 89 41 chrY 19978867 19979945 -4733134 + LTR65-int LTR ERV1 287 1416 -3520 1892 167 10 0 chrY 19979958 19980257 -4732822 + AluSx SINE Alu 1 302 -10 375 216 13 98 chrY 19980344 19980497 -4732582 + MER31-int LTR ERV1 3676 3815 -1121 1129 186 0 83 chrY 19980578 19980831 -4732248 + AluJb SINE Alu 1 232 -80 291 28 0 0 chrY 19980857 19980893 -4732186 + (TA)n Simple_repeat Simple_repeat 1 36 0 782 241 105 30 chrY 19980893 19981380 -4731699 + MER31-int LTR ERV1 4125 4678 -258 411 279 43 21 chrY 19981389 19981529 -4731550 + MLT1A1 LTR MaLR 80 222 -143 1877 125 29 4 chrY 19981531 19981866 -4731213 + AluSc SINE Alu 1 342 0 2136 118 3 0 chrY 19981867 19982163 -4730916 + AluY SINE Alu 1 297 -14 22 0 0 0 chrY 19982163 19982185 -4730894 + AT_rich Low_complexity Low_complexity 1 22 0 455 228 73 8 chrY 19982185 19982308 -4730771 + MLT1A1 LTR MaLR 216 346 -19 1372 216 16 13 chrY 19982602 19982908 -4730171 - AluJb SINE Alu 0 312 6 1368 197 28 28 chrY 19983422 19983706 -4729373 + AluSg SINE Alu 5 288 -22 821 133 22 0 chrY 19984579 19984714 -4728365 - AluSp/q SINE Alu -5 308 171 1306 206 86 37 chrY 19985792 19986220 -4726859 + L1M4 LINE L1 5297 5745 -429 1931 117 7 0 chrY 19986326 19986600 -4726479 + AluY SINE Alu 1 276 -35 509 0 16 0 chrY 19986600 19986661 -4726418 + (TA)n Simple_repeat Simple_repeat 2 63 0 1786 139 8 0 chrY 19986837 19987096 -4725983 + AluSc SINE Alu 1 261 -48 28 61 0 0 chrY 19987451 19987500 -4725579 + AT_rich Low_complexity Low_complexity 1 49 0 22 56 0 0 chrY 19988293 19988329 -4724750 + AT_rich Low_complexity Low_complexity 1 36 0 21 36 0 0 chrY 19991428 19991456 -4721623 + AT_rich Low_complexity Low_complexity 1 28 0 315 0 0 0 chrY 19991511 19991546 -4721533 + (CA)n Simple_repeat Simple_repeat 2 36 0 29 0 0 0 chrY 19991691 19991720 -4721359 + AT_rich Low_complexity Low_complexity 1 29 0 821 226 12 49 chrY 19992084 19992327 -4720752 - AluJb SINE Alu -78 234 1 1370 177 49 11 chrY 19992436 19992701 -4720378 + MER1B DNA MER1_type 1 275 -64 312 151 14 68 chrY 19992841 19992914 -4720165 + MER1B DNA MER1_type 252 320 -13 431 305 0 0 chrY 19992926 19993031 -4720048 - FLAM_C SINE Alu -33 110 6 22 0 0 0 chrY 19994334 19994356 -4718723 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chrY 19994543 19994564 -4718515 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chrY 19994634 19994655 -4718424 + AT_rich Low_complexity Low_complexity 1 21 0 29890 69 2 8 chrY 19995147 19999884 -4713195 - L1PA5 LINE L1 0 6154 1446 6126 57 16 1 chrY 19999884 20000621 -4712458 - L1PA3 LINE L1 0 6155 5408 13164 47 0 1 chrY 20000621 20002223 -4710856 + L1PA3 LINE L1 3803 5403 -743 10223 117 3 0 chrY 20002239 20003695 -4709384 - L1PA5 LINE L1 -4686 1460 1 218 322 99 8 chrY 20004779 20004900 -4708179 + MIR SINE MIR 57 188 -74 330 26 0 0 chrY 20005176 20005215 -4707864 + (CA)n Simple_repeat Simple_repeat 2 40 0 1216 222 11 7 chrY 20005388 20005672 -4707407 + AluSx SINE Alu 13 297 -15 181 200 46 0 chrY 20005775 20005840 -4707239 + CT-rich Low_complexity Low_complexity 2 69 0 * 195 129 0 0 chrY 20005832 20005863 -4707216 + (TTCC)n Simple_repeat Simple_repeat 2 32 0 697 152 53 20 chrY 20005863 20006014 -4707065 - FRAM SINE Alu 0 176 21 2028 245 60 22 chrY 20006015 20006816 -4706263 + L1MC1 LINE L1 5374 6311 -22 537 244 89 44 chrY 20006833 20007148 -4705931 - MER96B DNA MER1_type? -65 352 24 294 211 42 0 chrY 20007199 20007270 -4705809 - MER66A LTR ERV1 -2 476 403 917 221 38 52 chrY 20007312 20007602 -4705477 + pTR5 LTR ERV1 743 1028 -1410 4838 137 78 18 chrY 20007680 20008459 -4704620 + LTR12 LTR ERV1 1 826 0 57879 109 21 10 chrY 20008459 20016877 -4696202 + HERV9 LTR ERV1 1 8399 0 1706 92 369 137 chrY 20016930 20017559 -4695520 + LTR12 LTR ERV1 31 714 0 1199 225 92 22 chrY 20017606 20017922 -4695157 - MER66B LTR ERV1 -148 338 1 1668 196 33 15 chrY 20017922 20018259 -4694820 - MER66B-int LTR ERV1 0 6676 6334 1543 299 34 42 chrY 20018385 20019279 -4693800 - MER66-int LTR ERV1 -1567 6189 5142 1838 176 3 0 chrY 20019279 20019581 -4693498 + AluSc SINE Alu 1 303 -6 1543 299 34 42 chrY 20019581 20020098 -4692981 - MER66-int LTR ERV1 -2614 5142 4622 529 223 19 0 chrY 20020101 20020204 -4692875 - MER2 DNA MER2_type -235 110 6 486 295 28 51 chrY 20020332 20020586 -4692493 - L1M4 LINE L1 -1846 4300 4053 716 338 74 49 chrY 20020621 20020821 -4692258 - L1M4 LINE L1 -2192 3954 3760 1591 207 149 13 chrY 20020821 20021197 -4691882 + MSTA LTR MaLR 1 427 -1 716 338 74 49 chrY 20021197 20021893 -4691186 - L1M4 LINE L1 -2386 3760 3036 221 102 0 92 chrY 20022281 20022379 -4690700 + (TTAA)n Simple_repeat Simple_repeat 3 91 0 30 77 0 0 chrY 20022684 20022749 -4690330 + AT_rich Low_complexity Low_complexity 1 65 0 22 94 0 0 chrY 20022949 20023013 -4690066 + AT_rich Low_complexity Low_complexity 1 64 0 2137 166 17 8 chrY 20023840 20024195 -4688884 - MLT2A1 LTR ERVL -86 358 1 2684 130 29 0 chrY 20024195 20024604 -4688475 - HERVL-A1 LTR ERVL 0 5654 5234 4788 150 22 27 chrY 20024668 20025545 -4687534 - MER61B-int LTR ERV1 -2934 2283 1409 1820 124 28 25 chrY 20025545 20025854 -4687225 - AluY SINE Alu 0 310 1 4788 150 22 27 chrY 20025854 20025903 -4687176 - MER61B-int LTR ERV1 -3808 1409 1361 1784 137 11 0 chrY 20025894 20026165 -4686914 - MER61B-int LTR ERV1 -4000 1217 944 * 2073 208 27 42 chrY 20026175 20026724 -4686355 - MER61B-int LTR ERV1 -4380 837 297 574 189 49 56 chrY 20026801 20026944 -4686135 - MER61B-int LTR ERV1 -5074 143 2 1630 232 22 11 chrY 20026944 20027068 -4686011 - MER61B LTR ERV1 0 425 304 201 39 0 0 chrY 20027068 20027094 -4685985 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1630 232 22 11 chrY 20027094 20027331 -4685748 - MER61B LTR ERV1 -121 304 60 1675 238 22 12 chrY 20027346 20027838 -4685241 - L1M2 LINE L1 -1745 4401 3905 * 2288 253 50 26 chrY 20027835 20028894 -4684185 + L1M2 LINE L1 4394 5480 -743 1208 290 12 14 chrY 20028906 20029437 -4683642 - BSR/Beta Satellite Satellite -49 530 1 586 258 25 35 chrY 20029531 20030442 -4682637 - BSR/Beta Satellite Satellite 0 901 1 371 253 82 16 chrY 20030465 20030616 -4682463 - BSR/Beta Satellite Satellite -2 160 1 1191 300 11 7 chrY 20030628 20031429 -4681650 - BSR/Beta Satellite Satellite 0 804 1 1469 251 33 12 chrY 20031445 20032229 -4680850 - BSR/Beta Satellite Satellite -44 800 1 231 385 0 0 chrY 20032303 20032407 -4680672 - BSR/Beta Satellite Satellite -31 121 18 653 282 22 21 chrY 20032540 20033339 -4679740 - BSR/Beta Satellite Satellite 0 800 1 236 425 0 0 chrY 20033357 20033496 -4679583 - BSR/Beta Satellite Satellite -1 141 3 * 990 300 27 32 chrY 20033373 20033557 -4679522 - BSR/Beta Satellite Satellite -27 1078 895 1975 127 6 29 chrY 20033557 20033873 -4679206 - AluY SINE Alu -2 309 1 990 300 27 32 chrY 20033873 20034457 -4678622 - BSR/Beta Satellite Satellite -210 895 1 590 289 11 21 chrY 20034635 20035573 -4677506 - BSR/Beta Satellite Satellite -43 929 1 459 262 5 10 chrY 20035697 20035828 -4677251 - BSR/Beta Satellite Satellite 0 130 1 409 364 98 3 chrY 20035841 20036138 -4676941 - BSR/Beta Satellite Satellite -48 331 7 1172 294 3 6 chrY 20036150 20036477 -4676602 - BSR/Beta Satellite Satellite -9 370 45 365 139 0 14 chrY 20036578 20036650 -4676429 + (TG)n Simple_repeat Simple_repeat 2 72 0 425 320 9 0 chrY 20036757 20036904 -4676175 - BSR/Beta Satellite Satellite -15 148 1 244 309 12 0 chrY 20036962 20037043 -4676036 - BSR/Beta Satellite Satellite -46 96 15 1506 272 8 3 chrY 20037105 20037538 -4675541 - BSR/Beta Satellite Satellite -49 435 1 492 280 43 28 chrY 20037628 20038114 -4674965 - BSR/Beta Satellite Satellite -4 493 1 625 257 27 35 chrY 20038276 20038673 -4674406 - BSR/Beta Satellite Satellite 0 394 1 981 291 16 15 chrY 20038711 20039212 -4673867 - BSR/Beta Satellite Satellite -47 501 1 591 273 23 26 chrY 20039229 20040309 -4672770 - BSR/Beta Satellite Satellite 0 1077 1 906 279 56 14 chrY 20040404 20040902 -4672177 - BSR/Beta Satellite Satellite -42 518 1 582 269 17 33 chrY 20040913 20041360 -4671719 - BSR/Beta Satellite Satellite 0 439 1 977 263 35 24 chrY 20041374 20041844 -4671235 - BSR/Beta Satellite Satellite -22 475 1 571 265 11 31 chrY 20042088 20042813 -4670266 - BSR/Beta Satellite Satellite -6 710 1 1236 290 12 9 chrY 20043087 20043701 -4669378 - BSR/Beta Satellite Satellite -49 615 1 900 246 21 25 chrY 20043837 20044557 -4668522 - BSR/Beta Satellite Satellite -44 2007 1285 1549 248 77 15 chrY 20044557 20045036 -4668043 + LTR22 LTR ERVK 1 509 0 900 246 21 25 chrY 20045036 20045853 -4667226 - BSR/Beta Satellite Satellite -766 1285 1 915 249 11 34 chrY 20045864 20046643 -4666436 - BSR/Beta Satellite Satellite -3 761 1 688 266 45 35 chrY 20046742 20047032 -4666047 - BSR/Beta Satellite Satellite -64 315 23 588 277 21 17 chrY 20047123 20048051 -4665028 - BSR/Beta Satellite Satellite -1 931 1 396 283 0 0 chrY 20048317 20048416 -4664663 - BSR/Beta Satellite Satellite -43 99 1 771 342 12 0 chrY 20048471 20048790 -4664289 - BSR/Beta Satellite Satellite -48 331 9 865 259 100 10 chrY 20048807 20049096 -4663983 - BSR/Beta Satellite Satellite -9 370 56 253 311 11 11 chrY 20049122 20049212 -4663867 - BSR/Beta Satellite Satellite -46 96 7 1856 148 3 35 chrY 20049230 20049541 -4663538 + AluY SINE Alu 1 301 -10 548 250 34 19 chrY 20049549 20050277 -4662802 - BSR/Beta Satellite Satellite -16 739 1 518 251 13 35 chrY 20050593 20050975 -4662104 - BSR/Beta Satellite Satellite 0 373 1 498 266 3 36 chrY 20051033 20051263 -4661816 - BSR/Beta Satellite Satellite 0 222 1 284 347 8 0 chrY 20051280 20051404 -4661675 - BSR/Beta Satellite Satellite -11 131 7 1250 157 32 16 chrY 20051422 20051671 -4661408 - MER11B LTR ERVK 0 1236 984 7609 95 0 11 chrY 20051671 20052763 -4660316 - HERVK11 LTR ERVK -1349 6604 5525 * 10614 71 11 5 chrY 20052761 20054226 -4658853 - HERVK11 LTR ERVK -3352 4601 3128 4487 88 3 0 chrY 20054226 20054842 -4658237 - HERVK11 LTR ERVK -6171 1782 1165 3476 146 50 97 chrY 20054842 20055735 -4657344 - HERVK11 LTR ERVK -7102 851 1 3694 175 23 49 chrY 20055735 20056744 -4656335 - MER11C LTR ERVK 0 1071 1 1227 282 17 18 chrY 20056754 20057438 -4655641 - BSR/Beta Satellite Satellite -49 683 1 376 278 36 22 chrY 20057513 20057786 -4655293 - BSR/Beta Satellite Satellite -1 276 1 479 254 32 34 chrY 20057872 20058566 -4654513 - BSR/Beta Satellite Satellite 0 692 1 768 319 0 3 chrY 20058617 20059001 -4654078 - BSR/Beta Satellite Satellite -46 382 1 887 302 21 18 chrY 20059068 20059402 -4653677 - BSR/Beta Satellite Satellite -16 363 29 504 269 21 31 chrY 20059425 20059781 -4653298 - BSR/Beta Satellite Satellite 0 352 1 460 268 9 27 chrY 20059856 20060294 -4652785 - BSR/Beta Satellite Satellite 0 429 1 1867 141 0 44 chrY 20060326 20060667 -4652412 - AluSg SINE Alu 0 310 1 1148 287 8 7 chrY 20060677 20061465 -4651614 - BSR/Beta Satellite Satellite -1 788 1 1109 269 19 35 chrY 20061501 20062321 -4650758 - BSR/Beta Satellite Satellite -25 806 1 291 379 8 0 chrY 20062403 20062560 -4650519 - BSR/Beta Satellite Satellite -15 158 1 620 286 22 17 chrY 20062722 20063602 -4649477 - BSR/Beta Satellite Satellite -33 884 1 508 271 15 25 chrY 20063631 20063832 -4649247 - BSR/Beta Satellite Satellite 0 198 1 1036 314 0 0 chrY 20063946 20064242 -4648837 - BSR/Beta Satellite Satellite -58 321 26 1136 268 16 29 chrY 20064345 20065398 -4647681 - BSR/Beta Satellite Satellite -46 1600 547 243 0 0 0 chrY 20065398 20065425 -4647654 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1136 268 16 29 chrY 20065425 20065966 -4647113 - BSR/Beta Satellite Satellite -1099 547 1 747 286 9 3 chrY 20065977 20066162 -4646917 - BSR/Beta Satellite Satellite 0 186 1 1988 171 0 3 chrY 20066210 20066520 -4646559 - AluSg SINE Alu -1 309 1 247 302 94 0 chrY 20066527 20066633 -4646446 - BSR/Beta Satellite Satellite -223 156 41 239 292 0 0 chrY 20066924 20066972 -4646107 - MIR SINE MIR -203 59 12 387 247 65 45 chrY 20068275 20068429 -4644650 - MIR3 SINE MIR -28 180 24 478 304 32 61 chrY 20070435 20070715 -4642364 - MLT1J LTR MaLR -14 497 226 336 251 36 35 chrY 20071303 20071451 -4641628 + MIR SINE MIR 35 178 -61 11516 70 12 5 chrY 20072008 20073662 -4639417 - L1P LINE L1 -4480 1666 1 1454 164 107 0 chrY 20076250 20076513 -4636566 + AluJb SINE Alu 6 296 -16 846 223 175 13 chrY 20076514 20076828 -4636251 - MLT1J2 LTR MaLR -62 388 24 267 332 87 5 chrY 20077036 20077244 -4635835 + L1MC/D LINE L1 5534 5758 -2050 279 0 0 0 chrY 20077410 20077441 -4635638 + (CA)n Simple_repeat Simple_repeat 2 32 0 306 23 45 0 chrY 20077456 20077500 -4635579 + (TG)n Simple_repeat Simple_repeat 1 46 0 309 51 0 0 chrY 20078202 20078241 -4634838 + (TG)n Simple_repeat Simple_repeat 2 40 0 411 300 258 0 chrY 20078690 20078957 -4634122 + L3 LINE CR1 1053 1388 -189 2475 152 79 96 chrY 20079109 20079827 -4633252 + L1MB7 LINE L1 5474 6179 -5 251 304 0 0 chrY 20079853 20079955 -4633124 + L1MC5 LINE L1 7341 7442 -519 213 217 50 17 chrY 20080526 20080586 -4632493 - MIR SINE MIR -57 205 144 364 223 107 29 chrY 20080653 20080756 -4632323 - MIR SINE MIR -106 156 46 189 263 74 63 chrY 20082001 20082096 -4630983 - L2 LINE L2 -187 3085 2990 294 289 211 26 chrY 20082620 20082776 -4630303 + MIR3 SINE MIR 2 186 -22 21 0 0 0 chrY 20082976 20082997 -4630082 + AT_rich Low_complexity Low_complexity 1 21 0 206 396 61 24 chrY 20085550 20085714 -4627365 + L3 LINE CR1 1117 1286 -291 251 371 51 40 chrY 20087899 20088074 -4625005 + L3 LINE CR1 1109 1285 -292 233 366 64 29 chrY 20090285 20090457 -4622622 + L3 LINE CR1 1109 1286 -291 183 80 0 0 chrY 20090918 20090943 -4622136 + (A)n Simple_repeat Simple_repeat 1 25 0 2036 125 0 14 chrY 20096540 20096851 -4616228 + AluSq SINE Alu 2 308 0 551 170 30 10 chrY 20097356 20097456 -4615623 + Tigger3b DNA MER2_type 1 102 -1129 2329 91 0 19 chrY 20097462 20097771 -4615308 - AluY SINE Alu -8 303 1 5364 114 69 9 chrY 20097778 20098680 -4614399 + Tigger3b DNA MER2_type 274 1229 -2 355 253 0 0 chrY 20098682 20098761 -4614318 - MIR SINE MIR -114 148 70 25 0 0 0 chrY 20099471 20099496 -4613583 + AT_rich Low_complexity Low_complexity 1 25 0 292 320 158 25 chrY 20099606 20099756 -4613323 + MIR SINE MIR 32 217 -45 333 0 0 0 chrY 20099756 20099793 -4613286 + (CA)n Simple_repeat Simple_repeat 2 38 0 292 320 158 25 chrY 20099793 20099845 -4613234 + MIR SINE MIR 217 261 -1 3960 217 96 12 chrY 20100177 20101206 -4611873 + L1MC4 LINE L1 6459 7574 -468 1239 218 48 0 chrY 20101206 20101326 -4611753 + AluJo SINE Alu 1 114 -198 293 0 0 26 chrY 20101326 20101364 -4611715 + (CAAAA)n Simple_repeat Simple_repeat 4 40 0 1239 218 48 0 chrY 20101364 20101495 -4611584 + AluJo SINE Alu 114 264 -48 216 0 0 0 chrY 20101495 20101519 -4611560 + (CAAAA)n Simple_repeat Simple_repeat 4 27 0 239 238 48 16 chrY 20101588 20101651 -4611428 + L1MC4 LINE L1 7665 7729 -313 2191 95 3 0 chrY 20101654 20101937 -4611142 + AluSp SINE Alu 17 300 -13 250 209 75 0 chrY 20101951 20102018 -4611061 + L1MC4 LINE L1 7965 8036 -6 354 193 79 35 chrY 20102183 20102297 -4610782 - MER112 DNA MER1_type -20 240 122 4474 99 19 0 chrY 20102319 20102942 -4610137 + MER41B LTR ERV1 1 635 0 22 0 0 0 chrY 20103218 20103240 -4609839 + AT_rich Low_complexity Low_complexity 1 22 0 238 318 55 0 chrY 20103252 20103362 -4609717 - L2 LINE L2 -1 3312 3197 475 284 97 17 chrY 20104466 20104638 -4608441 + MER20B DNA MER1_type 16 202 -17 21 57 0 0 chrY 20104964 20104999 -4608080 + AT_rich Low_complexity Low_complexity 1 35 0 218 70 70 0 chrY 20106036 20106079 -4607000 + A-rich Low_complexity Low_complexity 2 47 0 397 288 27 62 chrY 20106989 20107281 -4605798 - L1MEd LINE L1 -2526 3603 3322 790 244 72 23 chrY 20107625 20107973 -4605106 - L1MEd LINE L1 -2907 3222 2858 4681 240 171 57 chrY 20108017 20108801 -4604278 + L2 LINE L2 811 1505 -1808 2014 113 14 14 chrY 20108801 20109094 -4603985 + AluSx SINE Alu 1 293 -19 4681 240 171 57 chrY 20109094 20109610 -4603469 + L2 LINE L2 1505 1961 -1352 2068 122 3 10 chrY 20109610 20109914 -4603165 + AluSx SINE Alu 1 302 -10 3421 93 6 8 chrY 20109924 20110416 -4602663 + L1PB1 LINE L1 5659 6149 -2 4681 240 171 57 chrY 20110416 20110789 -4602290 + L2 LINE L2 1968 2297 -1016 2320 98 0 0 chrY 20110789 20111085 -4601994 + AluSg SINE Alu 5 300 -10 4681 240 171 57 chrY 20111085 20111665 -4601414 + L2 LINE L2 2297 3313 0 389 265 44 6 chrY 20111711 20111892 -4601187 - L1MEd LINE L1 -3487 2642 2455 26 50 0 0 chrY 20112353 20112393 -4600686 + AT_rich Low_complexity Low_complexity 1 40 0 334 284 89 54 chrY 20112541 20113311 -4599768 - L1MEd LINE L1 -758 1732 841 22 35 0 0 chrY 20113962 20113991 -4599088 + AT_rich Low_complexity Low_complexity 1 29 0 557 330 37 21 chrY 20114460 20114648 -4598431 + MIR3 SINE MIR 12 202 -6 1909 155 0 23 chrY 20115220 20115529 -4597550 + AluSx SINE Alu 1 302 -10 413 252 162 26 chrY 20116068 20116334 -4596745 - L1ME4a LINE L1 -31 6090 5789 314 260 10 10 chrY 20116387 20116483 -4596596 - L1ME4a LINE L1 -315 5806 5711 249 164 269 0 chrY 20116498 20116565 -4596514 + L2 LINE L2 3225 3309 -4 400 275 61 75 chrY 20116606 20116860 -4596219 - L1ME4a LINE L1 -425 5696 5437 2127 119 0 0 chrY 20116860 20117153 -4595926 + AluSx SINE Alu 4 296 -16 400 275 61 75 chrY 20117153 20117236 -4595843 - L1ME4a LINE L1 -684 5437 5354 868 236 74 0 chrY 20118591 20118807 -4594272 - MIR SINE MIR -8 254 23 1604 166 36 26 chrY 20118912 20119220 -4593859 + AluJb SINE Alu 1 311 -1 249 244 134 76 chrY 20119289 20119408 -4593671 + MLT1K LTR MaLR 434 559 -29 3788 82 8 0 chrY 20119474 20119984 -4593095 - L1PA14 LINE L1 -10 6151 5638 3127 126 42 7 chrY 20119984 20120667 -4592412 + L1P4 LINE L1 4791 5506 -655 257 48 48 0 chrY 20120667 20120709 -4592370 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 3127 126 42 7 chrY 20120709 20120820 -4592259 + L1P4 LINE L1 5506 5612 -549 643 306 14 9 chrY 20121154 20121376 -4591703 + L2 LINE L2 2196 2418 -896 284 326 66 94 chrY 20121476 20121492 -4591587 - L2 LINE L2 -73 3199 3184 1879 148 3 0 chrY 20121492 20121775 -4591304 + AluSq SINE Alu 1 284 -29 284 326 66 94 chrY 20121775 20122046 -4591033 - L2 LINE L2 -88 3184 2920 644 268 34 55 chrY 20122087 20122322 -4590757 - MIR SINE MIR -13 249 20 711 311 38 13 chrY 20122598 20122836 -4590243 + L2 LINE L2 2090 2333 -981 768 157 0 0 chrY 20122863 20122978 -4590101 + AluSp/q SINE Alu 175 289 -24 2609 87 5 33 chrY 20122978 20123241 -4589838 + L1PB2 LINE L1 5769 6019 -132 2321 85 0 3 chrY 20123241 20123534 -4589545 + AluY SINE Alu 2 293 -18 2609 87 5 33 chrY 20123534 20123660 -4589419 + L1PB2 LINE L1 6019 6147 -4 200 187 22 44 chrY 20123697 20123788 -4589291 + (TTATA)n Simple_repeat Simple_repeat 1 89 0 202 110 22 66 chrY 20123791 20123882 -4589197 + (TATAA)n Simple_repeat Simple_repeat 3 89 0 501 241 52 9 chrY 20123955 20124071 -4589008 + L2 LINE L2 3192 3312 -1 218 261 70 108 chrY 20124297 20124454 -4588625 - MER5A DNA MER1_type -9 180 30 1190 174 9 27 chrY 20125636 20125860 -4587219 + MER58A DNA MER1_type 1 220 -4 817 276 114 19 chrY 20127252 20127902 -4585177 - MER20B DNA MER1_type -31 752 1 894 208 73 0 chrY 20129857 20130049 -4583030 - MIR SINE MIR -56 206 1 382 255 55 48 chrY 20130117 20130262 -4582817 + MIR3 SINE MIR 63 208 0 1943 124 10 14 chrY 20130348 20130639 -4582440 - AluSg SINE Alu -20 290 1 2581 248 95 38 chrY 20131082 20132253 -4580826 + L2 LINE L2 2072 3308 -5 208 238 0 0 chrY 20133036 20133078 -4580001 + MIR SINE MIR 103 144 -118 3445 144 43 0 chrY 20133886 20134484 -4578595 - L1MA5 LINE L1 -4 6296 5673 231 114 0 0 chrY 20134485 20134529 -4578550 + (GA)n Simple_repeat Simple_repeat 2 45 0 252 105 0 0 chrY 20134542 20134580 -4578499 - tRNA-Glu-GAG tRNA tRNA -37 38 1 1730 114 11 11 chrY 20134585 20134857 -4578222 - L1MA5 LINE L1 -618 5682 5411 2061 145 0 0 chrY 20135191 20135488 -4577591 + AluJb SINE Alu 1 297 -15 388 193 0 13 chrY 20135515 20135603 -4577476 - L1ME2 LINE L1 -153 6011 5926 692 200 35 0 chrY 20135603 20135748 -4577331 + L1ME2 LINE L1 6015 6164 0 252 0 0 0 chrY 20138175 20138203 -4574876 + (CAGA)n Simple_repeat Simple_repeat 2 29 0 23 33 0 0 chrY 20138254 20138284 -4574795 + AT_rich Low_complexity Low_complexity 1 30 0 328 245 31 41 chrY 20138784 20138882 -4574197 - L2 LINE L2 -1 3271 3175 800 119 0 0 chrY 20139985 20140094 -4572985 - AluSg/x SINE Alu -12 298 190 751 273 65 14 chrY 20140282 20140498 -4572581 + MIR SINE MIR 32 258 -4 508 246 8 8 chrY 20140588 20140718 -4572361 + MER94 DNA DNA 5 134 0 1142 224 27 0 chrY 20140852 20141075 -4572004 + MIR SINE MIR 12 240 -22 182 440 0 0 chrY 20142746 20142846 -4570233 - L2 LINE L2 -449 2865 2766 244 226 54 131 chrY 20143144 20143228 -4569851 - L2 LINE L2 0 3313 3224 3790 133 60 13 chrY 20143228 20143264 -4569815 + L1MB3 LINE L1 5450 5483 -700 1905 141 4 0 chrY 20143264 20143533 -4569546 + AluSq SINE Alu 1 270 -43 180 0 0 0 chrY 20143534 20143554 -4569525 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3790 133 60 13 chrY 20143554 20144216 -4568863 + L1MB3 LINE L1 5482 6183 0 244 226 54 131 chrY 20144216 20144299 -4568780 - L2 LINE L2 -89 3224 3159 198 322 47 40 chrY 20144395 20144544 -4568535 + L2 LINE L2 1948 2097 -1217 200 309 27 121 chrY 20144575 20144798 -4568281 + L2 LINE L2 2553 2754 -560 3122 136 95 9 chrY 20144815 20145373 -4567706 - L1MB7 LINE L1 -9 6175 5570 1702 158 13 51 chrY 20145615 20145931 -4567148 - AluSx SINE Alu -8 304 1 180 77 0 0 chrY 20145931 20145957 -4567122 + (TG)n Simple_repeat Simple_repeat 2 27 0 40832 45 2 2 chrY 20146003 20150947 -4562132 + L1P LINE L1 8 4948 -1198 1574 168 12 42 chrY 20151286 20151739 -4561340 + MER44D DNA MER2_type 1 569 -1918 2162 122 10 0 chrY 20151739 20152043 -4561036 + AluSq SINE Alu 7 313 0 1574 168 12 42 chrY 20152043 20152079 -4561000 + MER44D DNA MER2_type 569 605 0 2005 260 59 53 chrY 20152102 20152828 -4560251 - L1M4 LINE L1 -1916 4230 3497 1852 166 3 10 chrY 20152828 20153129 -4559950 - AluJo SINE Alu -13 299 1 2005 260 59 53 chrY 20153129 20153305 -4559774 - L1M4 LINE L1 -2649 3497 3323 709 161 62 31 chrY 20153308 20153470 -4559609 - Charlie1 DNA MER1_type 0 2761 2595 1725 180 0 0 chrY 20153472 20153784 -4559295 + AluJb SINE Alu 1 312 0 1272 303 58 39 chrY 20153803 20154716 -4558363 + L1M2c LINE L1 401 1740 -5826 1812 245 56 19 chrY 20154801 20155930 -4557149 + L1M2c LINE L1 2790 3959 -3606 928 213 134 24 chrY 20155930 20156184 -4556895 + LTR10A LTR ERV1 1 282 -327 626 108 0 0 chrY 20156224 20156326 -4556753 - BaEV-int LTR ERV1 -4935 1714 1613 462 139 0 14 chrY 20156327 20156399 -4556680 + AluS SINE Alu 227 297 -14 5539 156 21 22 chrY 20156403 20158079 -4555000 + L1MA6 LINE L1 4615 6293 -7 3370 161 86 44 chrY 20158091 20158423 -4554656 - Charlie1 DNA MER1_type -157 2604 2287 2149 124 32 63 chrY 20158423 20158771 -4554308 + MER1B DNA MER1_type 1 337 0 3370 161 86 44 chrY 20158771 20159248 -4553831 - Charlie1 DNA MER1_type -474 2287 1761 496 274 120 34 chrY 20159256 20159713 -4553366 - L1MCc LINE L1 -4935 1488 1277 966 179 50 17 chrY 20159780 20159959 -4553120 - MER5A DNA MER1_type -1 188 4 301 237 42 25 chrY 20160257 20160375 -4552704 - L1MCc LINE L1 -5901 1030 911 312 259 43 43 chrY 20160930 20161069 -4552010 - L1ME4a LINE L1 -57 6064 5926 23 33 0 0 chrY 20161143 20161173 -4551906 + AT_rich Low_complexity Low_complexity 1 30 0 527 164 18 9 chrY 20161372 20161540 -4551539 + MER58A DNA MER1_type 5 223 -1 742 214 0 7 chrY 20161988 20162128 -4550951 + FRAM SINE Alu 37 175 -1 544 286 43 73 chrY 20162228 20162462 -4550617 + MIR SINE MIR 4 230 -32 2056 106 10 7 chrY 20162990 20163283 -4549796 - AluSx SINE Alu -18 294 1 34 84 0 0 chrY 20163283 20163366 -4549713 + AT_rich Low_complexity Low_complexity 1 83 0 2141 118 0 16 chrY 20163464 20163768 -4549311 - AluSx SINE Alu -13 299 1 201 340 75 0 chrY 20163999 20164105 -4548974 - MIR SINE MIR -63 145 32 534 311 44 0 chrY 20164537 20164672 -4548407 + MIR3 SINE MIR 47 187 -21 930 181 121 0 chrY 20164797 20164979 -4548100 + MER3 DNA MER1_type 6 209 0 1804 143 38 7 chrY 20165101 20165388 -4547691 + AluSx SINE Alu 1 296 -16 204 206 0 0 chrY 20165923 20165957 -4547122 + polypurine Low_complexity Low_complexity 3 36 0 614 209 147 0 chrY 20166676 20166805 -4546274 - MER58B DNA MER1_type -2 339 192 632 211 0 9 chrY 20166810 20166924 -4546155 + MER58B DNA MER1_type 229 341 0 282 183 85 12 chrY 20167375 20167457 -4545622 + L1ME LINE L1 5731 5818 -303 578 270 74 69 chrY 20167502 20168069 -4545010 + L1ME4a LINE L1 5258 5827 -337 1753 163 12 38 chrY 20168383 20168702 -4544377 - AluJo SINE Alu -1 311 1 251 235 29 0 chrY 20168753 20168821 -4544258 + L1ME4a LINE L1 5982 6051 -70 531 209 111 52 chrY 20169634 20169806 -4543273 - L1ME1 LINE L1 -5 6161 5980 557 113 183 9 chrY 20169815 20169930 -4543149 - L1PA13 LINE L1 -3 6160 6026 1962 108 75 4 chrY 20170356 20170635 -4542444 - AluSx SINE Alu -13 299 1 3442 60 0 7 chrY 20170842 20171294 -4541785 + L1P LINE L1 4917 5365 -781 2819 16 0 3 chrY 20171294 20171606 -4541473 + AluYa5 SINE Alu 1 311 0 1613 251 15 62 chrY 20171998 20172464 -4540615 + LTR32 LTR ERVL 7 450 -21 1621 141 53 42 chrY 20173371 20173654 -4539425 + AluSx SINE Alu 1 286 -26 191 194 0 39 chrY 20174044 20174147 -4538932 + A-rich Low_complexity Low_complexity 3 101 0 313 289 108 39 chrY 20174212 20174444 -4538635 + L1ME LINE L1 769 1016 -5054 378 353 17 4 chrY 20174460 20174695 -4538384 + L1ME LINE L1 2581 2818 -3262 304 294 29 0 chrY 20174724 20174826 -4538253 + L1M4 LINE L1 4544 4648 -1498 1308 204 0 19 chrY 20174843 20175107 -4537972 - AluJb SINE Alu -43 269 11 514 284 31 5 chrY 20175117 20175339 -4537740 + L1M4 LINE L1 4642 4869 -1277 1934 224 9 42 chrY 20175351 20175785 -4537294 - MER61B LTR ERV1 0 425 6 12493 177 30 16 chrY 20175790 20179513 -4533566 - MER61B-int LTR ERV1 0 5217 1454 1031 199 11 6 chrY 20179557 20179733 -4533346 - MER61B LTR ERV1 -248 177 1 1844 234 20 8 chrY 20179893 20180388 -4532691 - L1M3 LINE L1 -1741 4405 3905 * 2374 239 70 22 chrY 20180385 20181434 -4531645 + L1M3 LINE L1 4394 5480 -703 1063 290 9 30 chrY 20181464 20182013 -4531066 - BSR/Beta Satellite Satellite -25 537 1 585 268 14 24 chrY 20182067 20183151 -4529928 - BSR/Beta Satellite Satellite -2 1072 1 211 288 114 30 chrY 20183818 20183950 -4529129 + MIR SINE MIR 109 251 -11 330 355 61 37 chrY 20184838 20185052 -4528027 - L2 LINE L2 -527 2787 2569 189 107 0 0 chrY 20185282 20185310 -4527769 + (T)n Simple_repeat Simple_repeat 1 28 0 182 33 67 0 chrY 20185625 20185655 -4527424 + (CAAA)n Simple_repeat Simple_repeat 4 35 0 1316 222 24 24 chrY 20186671 20186964 -4526115 - AluJo SINE Alu -19 293 1 7213 125 17 27 chrY 20187219 20188793 -4524286 - pTR5 LTR ERV1 -429 2009 734 2661 106 11 3 chrY 20188788 20189167 -4523912 - Harlequin LTR ERV1 -517 7882 7501 * 726 166 137 22 chrY 20189163 20189434 -4523645 - Harlequin LTR ERV1 -5755 1141 840 * 36407 95 6 7 chrY 20189435 20194382 -4518697 - Harlequin LTR ERV1 -3455 4944 1 5331 151 92 97 chrY 20194385 20196208 -4516871 - pTR5 LTR ERV1 0 2438 743 1525 241 23 24 chrY 20196214 20196440 -4516639 - MER119 DNA MER1_type 0 583 358 2283 85 0 31 chrY 20196440 20196759 -4516320 - AluY SINE Alu -2 309 1 1525 241 23 24 chrY 20196759 20197064 -4516015 - MER119 DNA MER1_type -225 358 1 294 212 0 0 chrY 20197760 20197826 -4515253 + MER116 DNA Mariner 9 74 -6 271 227 27 27 chrY 20198494 20198569 -4514510 + MIR SINE MIR 57 131 -131 613 228 7 16 chrY 20199667 20199823 -4513256 + MIR SINE MIR 46 203 -59 273 268 94 55 chrY 20199896 20200023 -4513056 - L3 LINE CR1 -23 1554 1423 1197 279 66 16 chrY 20200971 20201470 -4511609 + MLT1L LTR MaLR 1 524 -91 737 205 187 0 chrY 20201490 20201656 -4511423 + MIR SINE MIR 29 225 -37 2162 185 43 19 chrY 20201786 20202315 -4510764 + L1MB4 LINE L1 5285 5826 -354 685 184 16 40 chrY 20202608 20202733 -4510346 + FLAM_A SINE Alu 1 122 -11 207 0 0 0 chrY 20203981 20204004 -4509075 + (T)n Simple_repeat Simple_repeat 1 23 0 212 336 80 8 chrY 20204246 20204371 -4508708 + MIR SINE MIR 53 186 -76 868 195 0 24 chrY 20204388 20204552 -4508527 + AluJo SINE Alu 3 162 -150 1225 72 0 11 chrY 20204621 20204801 -4508278 + (GGAA)n Simple_repeat Simple_repeat 1 178 0 327 283 20 0 chrY 20205625 20205729 -4507350 + MIR SINE MIR 38 149 -59 304 246 167 26 chrY 20205922 20206036 -4507043 - L2 LINE L2 -4 3309 3180 524 241 0 6 chrY 20206044 20206214 -4506865 + GA-rich Low_complexity Low_complexity 1 169 0 325 236 123 0 chrY 20206216 20206322 -4506757 - MER63 DNA MER1_type -317 745 1 520 272 64 53 chrY 20206338 20206621 -4506458 - L2 LINE L2 -557 2757 2472 237 290 29 14 chrY 20206617 20206686 -4506393 - L2 LINE L2 -66 3206 3137 * 308 196 65 22 chrY 20207264 20207356 -4505723 + MLT1H LTR MaLR 66 161 -388 325 232 7 94 chrY 20207473 20207611 -4505468 + MLT1H LTR MaLR 424 549 0 276 111 95 16 chrY 20207728 20207791 -4505288 + LTR8A LTR ERV1 1 68 -659 262 288 0 0 chrY 20207798 20207864 -4505215 + MER50 LTR ERV1 12 77 -657 1780 185 3 0 chrY 20207916 20208213 -4504866 + AluJb SINE Alu 6 303 -9 3777 149 58 5 chrY 20208218 20208890 -4504189 + MER50 LTR ERV1 1 708 -26 332 59 0 0 chrY 20208890 20208941 -4504138 + L1MB4 LINE L1 6129 6179 -1 1391 198 46 82 chrY 20208949 20209510 -4503569 + L1ME1 LINE L1 1849 2389 -4007 489 161 21 0 chrY 20209529 20209622 -4503457 - AluS SINE Alu -218 95 1 546 242 114 49 chrY 20209718 20209982 -4503097 + MER76 LTR ERV 28 308 -380 924 173 0 0 chrY 20210006 20210185 -4502894 + CT-rich Low_complexity Low_complexity 1 179 0 691 73 0 36 chrY 20210197 20210307 -4502772 - AluSg/x SINE Alu -1 309 204 589 197 56 138 chrY 20210309 20210665 -4502414 + MER76 LTR ERV 349 675 -13 4392 234 33 45 chrY 20210672 20211582 -4501497 + L1ME1 LINE L1 2397 3316 -2899 1873 166 0 13 chrY 20211582 20211895 -4501184 + AluSq SINE Alu 1 309 -4 4392 234 33 45 chrY 20211895 20212166 -4500913 + L1ME1 LINE L1 3316 3589 -2626 1924 155 0 16 chrY 20212166 20212476 -4500603 + AluSx SINE Alu 7 311 -1 4392 234 33 45 chrY 20212476 20212994 -4500085 + L1ME1 LINE L1 3589 4077 -2138 2018 165 38 36 chrY 20212994 20213545 -4499534 + MLT2A2 LTR ERVL 1 554 0 4408 209 81 23 chrY 20213545 20214350 -4498729 + L1ME1 LINE L1 4073 4830 -1551 465 71 0 0 chrY 20214350 20214420 -4498659 + (TG)n Simple_repeat Simple_repeat 2 71 0 4408 209 81 23 chrY 20214420 20215660 -4497419 + L1ME1 LINE L1 4830 6381 0 2570 129 35 208 chrY 20215656 20216023 -4497056 + L1 LINE L1 3952 4381 -1765 * 369 0 0 0 chrY 20216023 20216064 -4497015 + (TTA)n Simple_repeat Simple_repeat 3 43 0 814 0 0 0 chrY 20216064 20216153 -4496926 - L1PA4 LINE L1 -18 6137 6049 2570 129 35 208 chrY 20216153 20216816 -4496263 + L1 LINE L1 4379 4804 -1342 1740 171 38 26 chrY 20216817 20217163 -4495916 + Tigger2a DNA MER2_type 13 362 -72 340 203 43 0 chrY 20217227 20217296 -4495783 + Tigger2a DNA MER2_type 371 442 -2 711 203 19 0 chrY 20217302 20217460 -4495619 + L1MA9 LINE L1 5921 6081 -231 24 0 0 0 chrY 20217596 20217620 -4495459 + AT_rich Low_complexity Low_complexity 1 24 0 1502 121 17 69 chrY 20218142 20218493 -4494586 - Tigger4(Zombi) DNA MER2_type -1 2730 6 267 346 96 0 chrY 20218885 20218989 -4494090 - L2 LINE L2 -3 3269 3156 359 277 0 0 chrY 20219097 20219209 -4493870 - HAL1b LINE L1 -20 1328 1217 189 279 16 16 chrY 20219527 20219588 -4493491 + MIR SINE MIR 87 147 -61 389 301 57 16 chrY 20219706 20219829 -4493250 + L2 LINE L2 3182 3309 -4 336 232 81 10 chrY 20219871 20219970 -4493109 - MER91C DNA MER1_type -32 108 3 22 0 0 0 chrY 20220007 20220029 -4493050 + AT_rich Low_complexity Low_complexity 1 22 0 327 276 17 52 chrY 20220029 20220145 -4492934 - HAL1b LINE L1 -34 1314 1203 360 0 0 0 chrY 20220148 20220188 -4492891 + (TA)n Simple_repeat Simple_repeat 2 41 0 277 286 105 54 chrY 20220208 20220319 -4492760 - L1ME4a LINE L1 -202 5919 5815 689 260 8 68 chrY 20220319 20220554 -4492525 + MER58A DNA MER1_type 1 221 -3 277 286 105 54 chrY 20220554 20220774 -4492305 - L1ME4a LINE L1 -306 5815 5571 1972 151 3 3 chrY 20221419 20221744 -4491335 - L1PB3 LINE L1 -1 6153 5829 276 204 0 0 chrY 20223164 20223213 -4489866 + MER5B DNA MER1_type 1 49 -129 2492 199 75 21 chrY 20223288 20223418 -4489661 + L1ME2 LINE L1 5454 5575 -589 2082 141 0 3 chrY 20223418 20223723 -4489356 + AluSg SINE Alu 1 304 -6 2492 199 75 21 chrY 20223723 20224254 -4488825 + L1ME2 LINE L1 5575 6151 -13 446 287 31 31 chrY 20224277 20224406 -4488673 + MER5B DNA MER1_type 50 178 0 1562 229 5 17 chrY 20224883 20225298 -4487781 + L1ME1 LINE L1 5578 5987 -179 550 217 7 0 chrY 20225311 20225449 -4487630 + L1MA10 LINE L1 6192 6330 -4 2943 206 63 36 chrY 20225828 20226625 -4486454 + L1MB5 LINE L1 4864 5712 -462 4646 103 3 7 chrY 20226625 20227307 -4485772 + L1PA14 LINE L1 5483 6161 0 2943 206 63 36 chrY 20227307 20227774 -4485305 + L1MB5 LINE L1 5712 6165 -9 449 268 100 50 chrY 20227902 20228122 -4484957 + MIR SINE MIR 14 244 -18 8345 178 53 61 chrY 20228242 20230166 -4482913 + L1MA4 LINE L1 13 1921 -5247 * 8972 185 25 104 chrY 20230163 20231122 -4481957 + L1MA4 LINE L1 2749 3782 -3385 279 54 0 0 chrY 20231122 20231159 -4481920 + (TA)n Simple_repeat Simple_repeat 1 37 0 8972 185 25 104 chrY 20231159 20232015 -4481064 + L1MA4 LINE L1 3782 4704 -2463 2353 93 0 3 chrY 20232015 20232327 -4480752 + AluY SINE Alu 1 311 0 8972 185 25 104 chrY 20232327 20233869 -4479210 + L1MA4 LINE L1 4704 5794 -1373 3383 144 29 15 chrY 20233869 20234486 -4478593 + L1MA4 LINE L1 6689 7315 -6 434 270 95 0 chrY 20235106 20235254 -4477825 - MIR SINE MIR -48 214 53 21 36 0 0 chrY 20235360 20235388 -4477691 + AT_rich Low_complexity Low_complexity 1 28 0 198 0 0 0 chrY 20235506 20235528 -4477551 + (A)n Simple_repeat Simple_repeat 1 22 0 25 31 0 0 chrY 20235708 20235740 -4477339 + AT_rich Low_complexity Low_complexity 1 32 0 428 243 86 33 chrY 20236396 20236548 -4476531 + MER5A DNA MER1_type 7 166 -23 198 0 0 0 chrY 20237522 20237544 -4475535 + (T)n Simple_repeat Simple_repeat 1 22 0 263 254 0 0 chrY 20238534 20238593 -4474486 + (CATATA)n Simple_repeat Simple_repeat 2 60 0 1568 174 38 51 chrY 20242144 20242275 -4470804 + AluJo SINE Alu 1 132 -180 2423 84 0 0 chrY 20242275 20242574 -4470505 + AluY SINE Alu 1 299 -12 1568 174 38 51 chrY 20242574 20242758 -4470321 + AluJo SINE Alu 132 312 0 2176 177 86 35 chrY 20243114 20243717 -4469362 + L1MB8 LINE L1 5545 6178 0 205 294 110 55 chrY 20243803 20243966 -4469113 - MIR3 SINE MIR -32 176 5 1980 150 0 19 chrY 20244102 20244416 -4468663 - AluJb SINE Alu -4 308 1 2442 51 3 29 chrY 20244643 20244956 -4468123 + AluY SINE Alu 1 305 -6 1862 136 17 10 chrY 20245295 20245590 -4467489 + AluSx SINE Alu 1 297 -15 22 70 0 0 chrY 20246443 20246486 -4466593 + AT_rich Low_complexity Low_complexity 1 43 0 34 49 0 37 chrY 20248206 20248287 -4464792 + AT_rich Low_complexity Low_complexity 1 78 0 250 371 51 40 chrY 20251514 20251689 -4461390 + L3 LINE CR1 1109 1285 -292 250 371 51 40 chrY 20253900 20254075 -4459004 + L3 LINE CR1 1109 1285 -292 250 371 51 40 chrY 20256285 20256460 -4456619 + L3 LINE CR1 1109 1285 -292 250 371 51 40 chrY 20258669 20258844 -4454235 + L3 LINE CR1 1109 1285 -292 250 371 51 40 chrY 20261053 20261228 -4451851 + L3 LINE CR1 1109 1285 -292 42092 40 21 2 chrY 20261704 20267742 -4445337 + L1PA2 LINE L1 1 6154 -1 232 419 36 24 chrY 20268465 20268632 -4444447 + L3 LINE CR1 1117 1285 -292 183 80 0 0 chrY 20269095 20269120 -4443959 + (A)n Simple_repeat Simple_repeat 1 25 0 206 396 61 24 chrY 20273239 20273403 -4439676 + L3 LINE CR1 1117 1286 -291 369 297 43 11 chrY 20275381 20275566 -4437513 - L1M4 LINE L1 -863 5283 5093 332 323 116 66 chrY 20277282 20277678 -4435401 - L3 LINE CR1 -45 1532 1117 288 0 0 0 chrY 20279850 20279882 -4433197 + (A)n Simple_repeat Simple_repeat 1 32 0 331 356 44 31 chrY 20279982 20280142 -4432937 - L3 LINE CR1 -299 1278 1117 216 0 0 0 chrY 20281423 20281447 -4431632 + (T)n Simple_repeat Simple_repeat 1 24 0 1194 126 11 11 chrY 20281904 20282086 -4430993 + AluSg/x SINE Alu 109 290 -22 315 231 22 22 chrY 20282089 20282180 -4430899 - L1ME LINE L1 -415 5706 5616 271 108 0 0 chrY 20282217 20282254 -4430825 + tRNA-Asp-GAC tRNA tRNA 1 37 -38 21 0 0 0 chrY 20282705 20282726 -4430353 + AT_rich Low_complexity Low_complexity 1 21 0 632 261 68 10 chrY 20284175 20284382 -4428697 - MER20 DNA MER1_type 0 219 1 201 74 0 0 chrY 20284578 20284605 -4428474 + (TTTTG)n Simple_repeat Simple_repeat 3 29 0 207 0 0 0 chrY 20285805 20285828 -4427251 + (T)n Simple_repeat Simple_repeat 1 23 0 319 302 112 9 chrY 20288471 20288587 -4424492 - L2 LINE L2 -1 3312 3185 239 246 102 42 chrY 20288876 20288994 -4424085 + L1MEd LINE L1 62 186 -5933 262 194 14 56 chrY 20289045 20289117 -4423962 - MER81 DNA DNA -7 107 39 343 314 92 94 chrY 20289184 20289566 -4423513 + L1MEd LINE L1 269 649 -5470 457 255 191 18 chrY 20290087 20290369 -4422710 - HAL1 LINE L1 -794 1713 1383 1497 199 0 7 chrY 20291270 20291547 -4421532 + AluSx SINE Alu 15 289 -23 72 32 0 0 chrY 20291616 20291709 -4421370 + AT_rich Low_complexity Low_complexity 1 93 0 441 248 39 62 chrY 20291713 20291842 -4421237 + MER5B DNA MER1_type 47 172 -6 373 258 274 0 chrY 20291882 20292006 -4421073 + MER5A DNA MER1_type 16 173 -16 1085 293 63 33 chrY 20292103 20292530 -4420549 + LTR67 LTR ERVL 112 551 -6 927 266 72 0 chrY 20293268 20293490 -4419589 - MIR SINE MIR -22 240 3 1463 226 23 42 chrY 20293612 20294054 -4419025 + MLT1A1 LTR MaLR 3 363 -2 1991 162 51 22 chrY 20294058 20294429 -4418650 + MLT1A1-int LTR MaLR 6 387 -1348 777 186 8 0 chrY 20295329 20295458 -4417621 - FLAM_A SINE Alu -2 131 2 681 289 50 40 chrY 20295501 20296049 -4417030 - L1M3 LINE L1 -349 5822 5272 2054 127 0 0 chrY 20296051 20296379 -4416700 - AluSx SINE Alu -21 291 1 234 0 0 0 chrY 20297242 20297268 -4415811 + (A)n Simple_repeat Simple_repeat 1 26 0 225 0 0 0 chrY 20299049 20299074 -4414005 + (T)n Simple_repeat Simple_repeat 1 25 0 208 396 61 24 chrY 20299522 20299686 -4413393 - L3 LINE CR1 -291 1286 1117 240 111 0 0 chrY 20301431 20301467 -4411612 + (T)n Simple_repeat Simple_repeat 1 36 0 190 388 66 26 chrY 20301926 20302078 -4411001 - L3 LINE CR1 -291 1286 1129 208 396 61 24 chrY 20304290 20304454 -4408625 - L3 LINE CR1 -291 1286 1117 240 111 0 0 chrY 20306196 20306232 -4406847 + (T)n Simple_repeat Simple_repeat 1 36 0 190 388 66 26 chrY 20306691 20306843 -4406236 - L3 LINE CR1 -291 1286 1129 208 396 61 24 chrY 20309068 20309232 -4403847 - L3 LINE CR1 -291 1286 1117 240 111 0 0 chrY 20310977 20311013 -4402066 + (T)n Simple_repeat Simple_repeat 1 36 0 190 388 66 26 chrY 20311472 20311624 -4401455 - L3 LINE CR1 -291 1286 1129 21 0 0 0 chrY 20315742 20315763 -4397316 + AT_rich Low_complexity Low_complexity 1 21 0 235 419 36 24 chrY 20316223 20316390 -4396689 - L3 LINE CR1 -292 1285 1117 41863 40 21 2 chrY 20317112 20323150 -4389929 - L1PA2 LINE L1 -1 6154 1 251 371 51 40 chrY 20323626 20323801 -4389278 - L3 LINE CR1 -292 1285 1109 251 371 51 40 chrY 20326011 20326186 -4386893 - L3 LINE CR1 -292 1285 1109 34 49 0 37 chrY 20329413 20329494 -4383585 + AT_rich Low_complexity Low_complexity 1 78 0 180 269 124 48 chrY 20330438 20330583 -4382496 + L2 LINE L2 3148 3303 -10 21 71 0 0 chrY 20331214 20331256 -4381823 + AT_rich Low_complexity Low_complexity 1 42 0 1811 136 17 10 chrY 20332109 20332404 -4380675 - AluSx SINE Alu -15 297 1 2397 51 3 29 chrY 20332743 20333056 -4380023 - AluY SINE Alu -6 305 1 1920 150 0 19 chrY 20333283 20333597 -4379482 + AluJb SINE Alu 1 308 -4 201 294 110 55 chrY 20333733 20333896 -4379183 + MIR3 SINE MIR 5 176 -32 2384 177 86 35 chrY 20333982 20334585 -4378494 - L1MB8 LINE L1 0 6178 5545 1498 174 38 51 chrY 20334941 20335125 -4377954 - AluJo SINE Alu 0 312 132 2374 84 0 0 chrY 20335125 20335424 -4377655 - AluY SINE Alu -12 299 1 1498 174 38 51 chrY 20335424 20335555 -4377524 - AluJo SINE Alu -180 132 1 263 254 0 0 chrY 20339106 20339165 -4373914 + (TATATG)n Simple_repeat Simple_repeat 2 60 0 189 0 0 0 chrY 20340155 20340176 -4372903 + (A)n Simple_repeat Simple_repeat 1 21 0 413 243 86 33 chrY 20341150 20341302 -4371777 - MER5A DNA MER1_type -23 166 7 25 31 0 0 chrY 20341958 20341990 -4371089 + AT_rich Low_complexity Low_complexity 1 32 0 198 0 0 0 chrY 20342170 20342192 -4370887 + (T)n Simple_repeat Simple_repeat 1 22 0 21 36 0 0 chrY 20342310 20342338 -4370741 + AT_rich Low_complexity Low_complexity 1 28 0 432 270 95 0 chrY 20342444 20342592 -4370487 + MIR SINE MIR 53 214 -48 3412 144 29 15 chrY 20343212 20343830 -4369249 - L1MA4 LINE L1 -6 6294 5668 9848 183 23 90 chrY 20343830 20345370 -4367709 - L1 LINE L1 -1374 5793 4151 2301 93 0 3 chrY 20345370 20345682 -4367397 - AluY SINE Alu 0 311 1 9848 183 23 90 chrY 20345682 20346538 -4366541 - L1 LINE L1 -3016 4151 3683 279 54 0 0 chrY 20346538 20346575 -4366504 + (TA)n Simple_repeat Simple_repeat 1 37 0 9848 183 23 90 chrY 20346575 20347542 -4365537 - L1 LINE L1 -3484 3683 2652 9000 178 53 61 chrY 20347531 20349455 -4363624 - L1 LINE L1 -5247 1921 13 * 436 268 100 50 chrY 20349575 20349795 -4363284 - MIR SINE MIR -18 244 14 3333 206 63 39 chrY 20349923 20350390 -4362689 - L1MB5 LINE L1 -9 6165 5711 5003 103 3 7 chrY 20350390 20351072 -4362007 - L1PA14 LINE L1 0 6161 5483 3333 206 63 39 chrY 20351072 20351869 -4361210 - L1MB5 LINE L1 -463 5711 4864 617 217 7 0 chrY 20352248 20352386 -4360693 - L1MA10 LINE L1 -4 6330 6192 1736 229 5 17 chrY 20352399 20352814 -4360265 - L1ME1 LINE L1 -179 5987 5578 441 287 31 31 chrY 20353291 20353420 -4359659 - MER5B DNA MER1_type 0 178 50 2792 199 75 21 chrY 20353443 20353974 -4359105 - L1ME2 LINE L1 -13 6151 5575 2051 144 0 3 chrY 20353974 20354279 -4358800 - AluSg SINE Alu -6 304 1 2792 199 75 21 chrY 20354279 20354409 -4358670 - L1ME2 LINE L1 -589 5575 5454 271 204 0 0 chrY 20354484 20354533 -4358546 - MER5B DNA MER1_type -129 49 1 2123 148 21 3 chrY 20355947 20356278 -4356801 + L1PB3 LINE L1 5817 6153 -1 417 286 105 54 chrY 20356923 20357143 -4355936 + L1ME4a LINE L1 5571 5815 -306 778 260 8 68 chrY 20357143 20357378 -4355701 - MER58A DNA MER1_type -3 221 1 417 286 105 54 chrY 20357378 20357489 -4355590 + L1ME4a LINE L1 5815 5919 -202 378 0 0 0 chrY 20357509 20357551 -4355528 + (TA)n Simple_repeat Simple_repeat 2 43 0 253 276 17 52 chrY 20357554 20357670 -4355409 + HAL1b LINE L1 1203 1314 -34 22 0 0 0 chrY 20357670 20357692 -4355387 + AT_rich Low_complexity Low_complexity 1 22 0 343 232 81 10 chrY 20357729 20357828 -4355251 + MER91C DNA MER1_type 3 108 -32 379 301 57 16 chrY 20357870 20357993 -4355086 - L2 LINE L2 -4 3309 3182 191 279 16 16 chrY 20358111 20358172 -4354907 - MIR SINE MIR -61 147 87 404 277 0 0 chrY 20358490 20358602 -4354477 + HAL1b LINE L1 1217 1328 -20 260 346 96 0 chrY 20358710 20358814 -4354265 + L2 LINE L2 3156 3269 -3 1643 121 17 69 chrY 20359206 20359557 -4353522 + Tigger4(Zombi) DNA MER2_type 6 2730 -1 24 0 0 0 chrY 20360079 20360103 -4352976 + AT_rich Low_complexity Low_complexity 1 24 0 779 215 30 8 chrY 20360206 20360397 -4352682 - L1MA9 LINE L1 -182 6118 5921 366 203 43 0 chrY 20360403 20360472 -4352607 - Tigger2a DNA MER2_type -2 442 371 1906 171 38 26 chrY 20360536 20360882 -4352197 - Tigger2a DNA MER2_type -72 362 13 2952 129 35 210 chrY 20360883 20361548 -4351531 - L1 LINE L1 -1342 4804 4382 867 0 0 0 chrY 20361548 20361676 -4351403 + L1PA4 LINE L1 6049 6178 0 2952 129 35 210 chrY 20361676 20362043 -4351036 - L1 LINE L1 -1764 4382 3952 5001 210 83 23 chrY 20362052 20363280 -4349799 - L1ME1 LINE L1 -9 6226 4828 450 83 0 0 chrY 20363280 20363352 -4349727 + (CA)n Simple_repeat Simple_repeat 2 73 0 5001 210 83 23 chrY 20363352 20364157 -4348922 - L1ME1 LINE L1 -1407 4828 4073 2166 165 38 36 chrY 20364157 20364708 -4348371 - MLT2A2 LTR ERVL 0 554 1 5080 232 33 47 chrY 20364708 20365226 -4347853 - L1ME1 LINE L1 -2138 4077 3553 1905 155 0 16 chrY 20365226 20365536 -4347543 - AluSx SINE Alu -1 311 7 5080 232 33 47 chrY 20365536 20365807 -4347272 - L1ME1 LINE L1 -2662 3553 3280 1846 162 0 13 chrY 20365807 20366116 -4346963 - AluSq SINE Alu -4 309 5 5080 232 33 47 chrY 20366116 20367027 -4346052 - L1ME1 LINE L1 -2935 3280 2400 698 198 69 135 chrY 20367029 20367392 -4345687 - MER76 LTR ERV 0 688 350 755 88 0 26 chrY 20367392 20367506 -4345573 + AluSg/x SINE Alu 200 310 0 870 189 0 0 chrY 20367517 20367697 -4345382 + GA-rich Low_complexity Low_complexity 1 180 0 632 230 108 65 chrY 20367729 20368007 -4345072 - MER76 LTR ERV -380 308 19 529 174 0 20 chrY 20368090 20368188 -4344891 + AluSg1 SINE Alu 2 97 -212 1610 196 55 81 chrY 20368195 20368762 -4344317 - L1ME1 LINE L1 -3996 2400 1849 360 59 0 0 chrY 20368770 20368821 -4344258 - L1MB4 LINE L1 -1 6179 6129 4082 149 58 5 chrY 20368821 20369493 -4343586 - MER50 LTR ERV1 -26 708 1 1752 185 3 0 chrY 20369498 20369795 -4343284 - AluJb SINE Alu -9 303 6 308 296 102 9 chrY 20369805 20369913 -4343166 - MER50 LTR ERV1 -605 129 12 310 111 95 16 chrY 20369920 20369983 -4343096 - LTR8A LTR ERV1 -659 68 1 377 255 114 60 chrY 20370100 20370447 -4342632 - MLT1H LTR MaLR 0 549 66 233 290 29 14 chrY 20371025 20371094 -4341985 + L2 LINE L2 3137 3206 -66 * 527 272 64 53 chrY 20371090 20371373 -4341706 + L2 LINE L2 2472 2757 -557 367 236 123 0 chrY 20371389 20371495 -4341584 + MER63 DNA MER1_type 1 745 -317 524 241 0 6 chrY 20371497 20371667 -4341412 + CT-rich Low_complexity Low_complexity 1 169 0 296 246 167 26 chrY 20371675 20371789 -4341290 + L2 LINE L2 3180 3309 -4 329 283 20 0 chrY 20371982 20372086 -4340993 - MIR SINE MIR -59 149 38 1198 73 0 11 chrY 20372910 20373087 -4339992 + (TTCC)n Simple_repeat Simple_repeat 4 178 0 847 182 0 26 chrY 20373165 20373319 -4339760 - AluJo SINE Alu -160 152 3 215 333 63 9 chrY 20373336 20373447 -4339632 - MIR SINE MIR -76 186 70 198 0 0 0 chrY 20373703 20373725 -4339354 + (A)n Simple_repeat Simple_repeat 1 22 0 241 275 50 50 chrY 20374615 20374695 -4338384 + MLT1J2 LTR MaLR 69 129 -321 729 184 16 40 chrY 20374973 20375098 -4337981 - FLAM_A SINE Alu -11 122 1 2412 185 43 19 chrY 20375391 20375920 -4337159 - L1MB4 LINE L1 -354 5826 5285 729 205 187 0 chrY 20376050 20376216 -4336863 - MIR SINE MIR -37 225 29 1377 279 66 16 chrY 20376236 20376735 -4336344 - MLT1L LTR MaLR -91 524 1 268 268 94 55 chrY 20377683 20377810 -4335269 + L3 LINE CR1 1423 1554 -23 606 228 7 16 chrY 20377883 20378039 -4335040 - MIR SINE MIR -59 203 46 274 227 27 27 chrY 20379137 20379212 -4333867 - MIR SINE MIR -131 131 57 323 212 0 0 chrY 20379880 20379946 -4333133 - MER116 DNA Mariner -6 74 9 1692 241 23 24 chrY 20380642 20380947 -4332132 + MER119 DNA MER1_type 1 358 -225 2299 85 0 31 chrY 20380947 20381266 -4331813 + AluY SINE Alu 1 309 -2 1692 241 23 24 chrY 20381266 20381492 -4331587 + MER119 DNA MER1_type 358 583 0 5310 146 92 91 chrY 20381498 20383321 -4329758 + pTR5 LTR ERV1 743 2438 0 36407 95 6 7 chrY 20383324 20388271 -4324808 + Harlequin LTR ERV1 1 4944 -3455 726 166 137 22 chrY 20388272 20388543 -4324536 + Harlequin LTR ERV1 840 1141 -5755 * 2661 106 11 3 chrY 20388539 20388918 -4324161 + Harlequin LTR ERV1 7501 7882 -517 * 7213 125 17 27 chrY 20388913 20390487 -4322592 + pTR5 LTR ERV1 734 2009 -429 1316 222 24 24 chrY 20390742 20391035 -4322044 + AluJo SINE Alu 1 293 -19 182 33 67 0 chrY 20392051 20392081 -4320998 + (TTTG)n Simple_repeat Simple_repeat 4 35 0 189 107 0 0 chrY 20392396 20392424 -4320655 + (A)n Simple_repeat Simple_repeat 1 28 0 330 355 61 37 chrY 20392654 20392868 -4320211 + L2 LINE L2 2569 2787 -527 211 288 114 30 chrY 20393756 20393888 -4319191 - MIR SINE MIR -11 251 109 585 269 17 21 chrY 20394555 20395639 -4317440 + BSR/Beta Satellite Satellite 1 1079 -6 1063 280 8 33 chrY 20395693 20396242 -4316837 + BSR/Beta Satellite Satellite 1 535 -37 2374 239 70 22 chrY 20396272 20397321 -4315758 - L1M3 LINE L1 -703 5480 4394 1859 234 20 8 chrY 20397318 20397813 -4315266 + L1M3 LINE L1 3905 4405 -1741 * 303 301 124 0 chrY 20397810 20397923 -4315156 - L1M4 LINE L1 -1136 5712 5586 * 1031 199 11 6 chrY 20397973 20398149 -4314930 + MER61B LTR ERV1 1 177 -248 11317 178 30 16 chrY 20398193 20401916 -4311163 + MER61B-int LTR ERV1 1454 5217 0 1772 224 9 42 chrY 20401921 20402355 -4310724 + MER61B LTR ERV1 6 425 0 427 284 31 5 chrY 20402367 20402589 -4310490 - L1M4 LINE L1 -1277 5571 5344 1325 204 0 19 chrY 20402599 20402863 -4310216 + AluJb SINE Alu 11 269 -43 255 290 30 0 chrY 20402882 20402982 -4310097 - L1M4 LINE L1 -1500 5348 5246 293 353 17 4 chrY 20403011 20403246 -4309833 - L1M4 LINE L1 -3262 3586 3349 321 244 35 128 chrY 20403252 20403725 -4309354 - L1M4 LINE L1 -2696 4152 1766 1649 191 11 0 chrY 20404052 20404335 -4308744 - AluSx SINE Alu -26 286 1 1455 252 15 61 chrY 20405242 20405699 -4307380 - LTR32 LTR ERVL -21 450 15 2833 10 0 0 chrY 20406091 20406423 -4306656 - AluYa5 SINE Alu 0 332 1 1767 164 0 11 chrY 20409162 20409443 -4303636 + AluSc SINE Alu 5 282 -27 309 109 0 0 chrY 20409443 20409489 -4303590 + (TAAG)n Simple_repeat Simple_repeat 2 47 0 1863 170 3 0 chrY 20410274 20410568 -4302511 - AluSq SINE Alu -18 295 1 23 33 0 0 chrY 20411735 20411765 -4301314 + AT_rich Low_complexity Low_complexity 1 30 0 4504 234 15 64 chrY 20411782 20412810 -4300269 + L1PA12 LINE L1 1 1078 -6503 603 40 0 0 chrY 20412810 20412884 -4300195 + (TTCC)n Simple_repeat Simple_repeat 4 77 0 4504 234 15 64 chrY 20412884 20412927 -4300152 + L1PA12 LINE L1 1078 1122 -6459 1226 48 0 37 chrY 20412927 20413114 -4299965 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 4504 234 15 64 chrY 20413114 20413169 -4299910 + L1PA12 LINE L1 1122 1178 -6403 1843 161 3 7 chrY 20413169 20413460 -4299619 - AluSp SINE Alu -21 292 3 4504 234 15 64 chrY 20413460 20414163 -4298916 + L1PA12 LINE L1 1178 2004 -5577 3379 270 164 32 chrY 20414161 20416643 -4296436 + L1PA13 LINE L1 339 3153 -3644 * 1798 179 0 0 chrY 20418456 20418752 -4294327 + AluSq SINE Alu 2 297 -16 4066 45 29 0 chrY 20418752 20419139 -4293940 + L1PA4 LINE L1 5612 6020 -152 189 0 0 0 chrY 20419139 20419160 -4293919 + (AGGGGG)n Simple_repeat Simple_repeat 2 22 0 4066 45 29 0 chrY 20419160 20419318 -4293761 + L1PA4 LINE L1 6020 6172 0 234 29 0 29 chrY 20419283 20419489 -4293590 + (TAA)n Simple_repeat Simple_repeat 3 207 0 281 234 32 0 chrY 20419856 20419950 -4293129 + A-rich Low_complexity Low_complexity 4 100 0 354 329 27 14 chrY 20420019 20420311 -4292768 + L1M4c LINE L1 1370 1665 -4719 571 287 100 35 chrY 20420327 20420957 -4292122 + L1M4c LINE L1 2443 3113 -3269 1618 160 24 3 chrY 20420962 20421249 -4291830 - AluSc SINE Alu -16 293 1 520 281 46 23 chrY 20421279 20421581 -4291498 + L1 LINE L1 4524 4832 -1314 1132 277 14 9 chrY 20421592 20422719 -4290360 + BSR/Beta Satellite Satellite 1 1132 -59 602 275 13 19 chrY 20422784 20423861 -4289218 + BSR/Beta Satellite Satellite 1 1069 -6 1036 293 20 19 chrY 20423957 20424598 -4288481 + BSR/Beta Satellite Satellite 1 641 0 560 288 6 20 chrY 20424864 20425460 -4287619 + BSR/Beta Satellite Satellite 1 587 -34 413 243 48 0 chrY 20425874 20425977 -4287102 + BSR/Beta Satellite Satellite 1 108 -271 394 284 9 18 chrY 20425990 20426222 -4286857 + BSR/Beta Satellite Satellite 1 229 -6 992 293 14 22 chrY 20426318 20426874 -4286205 + BSR/Beta Satellite Satellite 1 551 -3 231 378 0 0 chrY 20426953 20427072 -4286007 + BSR/Beta Satellite Satellite 3 121 -21 508 284 19 22 chrY 20427205 20427924 -4285155 + BSR/Beta Satellite Satellite 1 716 -64 311 341 42 2 chrY 20427997 20428205 -4284874 + BSR/Beta Satellite Satellite 1 216 -7 1125 283 16 14 chrY 20428231 20429046 -4284033 + BSR/Beta Satellite Satellite 1 816 -44 1122 305 3 9 chrY 20429118 20429940 -4283139 + BSR/Beta Satellite Satellite 1 817 -35 611 281 10 18 chrY 20429985 20430904 -4282175 + BSR/Beta Satellite Satellite 1 912 -6 895 273 22 11 chrY 20431000 20431271 -4281808 + BSR/Beta Satellite Satellite 21 294 -85 522 204 4 49 chrY 20431380 20431560 -4281519 + BSR/Beta Satellite Satellite 1 171 -21 2091 239 71 19 chrY 20431567 20432592 -4280487 - L1M2 LINE L1 -743 5403 4400 301 250 9 17 chrY 20432596 20432712 -4280367 + L1 LINE L1 3905 4019 -2127 1222 184 37 7 chrY 20432746 20433017 -4280062 + MER61B-int LTR ERV1 3598 3876 -1341 4325 178 30 25 chrY 20433018 20434243 -4278836 + MER61B-int LTR ERV1 1629 5217 0 2052 218 17 9 chrY 20434243 20434665 -4278414 + MER61B LTR ERV1 1 425 0 426 294 19 9 chrY 20434690 20434904 -4278175 - L1 LINE L1 -1290 4856 4641 1180 242 3 46 chrY 20434915 20435200 -4277879 + AluJb SINE Alu 13 285 -27 478 296 6 6 chrY 20435380 20435556 -4277523 - L1MEd LINE L1 -3324 2805 2630 305 293 96 54 chrY 20435562 20435876 -4277203 - L1MEd LINE L1 -4984 1135 809 403 237 28 28 chrY 20435876 20436053 -4277026 + T-rich Low_complexity Low_complexity 2 178 0 1716 168 10 26 chrY 20436460 20436764 -4276315 - AluSx SINE Alu -11 301 3 2530 62 0 0 chrY 20436808 20437114 -4275965 + AluY SINE Alu 6 311 0 978 272 16 47 chrY 20437968 20438288 -4274791 - LTR32 LTR ERVL -1 470 161 732 63 0 0 chrY 20438291 20438386 -4274693 + AluY SINE Alu 6 100 -211 376 263 45 45 chrY 20438449 20438605 -4274474 - LTR32 LTR ERVL -301 170 15 489 62 0 0 chrY 20440312 20440377 -4272702 + (TG)n Simple_repeat Simple_repeat 2 66 0 1818 180 0 0 chrY 20441674 20441969 -4271110 + AluY SINE Alu 1 295 -16 2114 116 3 31 chrY 20443600 20443943 -4269136 + AluSp SINE Alu 1 334 0 1741 179 3 7 chrY 20444189 20444490 -4268589 - AluSc SINE Alu -9 300 1 5560 254 9 4 chrY 20444529 20446256 -4266823 + L1PA12 LINE L1 1 2004 -5577 3947 266 113 32 chrY 20446254 20448206 -4264873 + L1PA13 LINE L1 339 2132 -4665 * 2448 154 23 50 chrY 20448206 20448763 -4264316 - MER11A LTR ERVK -2 1264 723 5611 169 20 45 chrY 20448209 20449303 -4263776 - MER11C LTR ERVK -4 1067 1 3947 266 113 32 chrY 20449303 20449458 -4263621 + L1PA13 LINE L1 2672 2755 -4042 277 23 0 45 chrY 20449458 20449502 -4263577 + (CAAAA)n Simple_repeat Simple_repeat 3 44 0 3947 266 113 32 chrY 20449502 20449946 -4263133 + L1PA13 LINE L1 2755 3162 -3635 651 189 0 0 chrY 20451314 20451420 -4261659 + AluSq/x SINE Alu 2 107 -205 236 175 25 62 chrY 20451569 20451649 -4261430 + A-rich Low_complexity Low_complexity 3 79 0 482 309 39 25 chrY 20451715 20452000 -4261079 + L1M4c LINE L1 1370 1658 -4726 888 282 93 44 chrY 20452025 20452660 -4260419 + L1M4c LINE L1 2445 3110 -3272 766 175 54 60 chrY 20452661 20452827 -4260252 - AluSg/x SINE Alu -10 302 138 339 324 53 10 chrY 20452856 20453155 -4259924 + L1 LINE L1 4521 4832 -1314 565 265 18 29 chrY 20453164 20453486 -4259593 + BSR/Beta Satellite Satellite 1 318 -3 1225 285 12 19 chrY 20453519 20455447 -4257632 + BSR/Beta Satellite Satellite 1 1914 -13 1061 282 7 22 chrY 20455550 20456187 -4256892 + BSR/Beta Satellite Satellite 1 627 0 476 276 28 34 chrY 20456274 20457063 -4256016 + BSR/Beta Satellite Satellite 1 784 -23 231 237 68 0 chrY 20457084 20457143 -4255936 + BSR/Beta Satellite Satellite 75 137 -15 305 292 19 14 chrY 20457236 20457361 -4255718 + BSR/Beta Satellite Satellite 1 125 -51 946 256 64 18 chrY 20457453 20458220 -4254859 + BSR/Beta Satellite Satellite 1 802 -44 1137 294 10 3 chrY 20458290 20458894 -4254185 + BSR/Beta Satellite Satellite 1 608 -122 291 319 11 0 chrY 20459004 20459098 -4253981 + BSR/Beta Satellite Satellite 1 95 -47 546 285 24 13 chrY 20459239 20460359 -4252720 + BSR/Beta Satellite Satellite 1 1132 0 792 336 13 10 chrY 20460447 20460745 -4252334 + BSR/Beta Satellite Satellite 21 319 -60 577 243 21 43 chrY 20460792 20461007 -4252072 + BSR/Beta Satellite Satellite 1 210 0 331 373 0 0 chrY 20461083 20461201 -4251878 + BSR/Beta Satellite Satellite 4 121 -21 595 273 26 21 chrY 20461346 20462062 -4251017 + BSR/Beta Satellite Satellite 1 719 -68 278 334 27 15 chrY 20462128 20462270 -4250809 + BSR/Beta Satellite Satellite 2 264 -6 235 143 0 24 chrY 20462297 20462339 -4250740 + BSR/Beta Satellite Satellite 321 361 -18 1171 266 44 19 chrY 20462357 20463952 -4249127 + BSR/Beta Satellite Satellite 1 1634 -46 529 270 14 21 chrY 20464018 20465112 -4247967 + BSR/Beta Satellite Satellite 1 1086 -46 1120 309 25 17 chrY 20465177 20465936 -4247143 + BSR/Beta Satellite Satellite 1 765 -23 1087 262 16 34 chrY 20466008 20467896 -4245183 + BSR/Beta Satellite Satellite 1 1854 -6 1337 294 5 7 chrY 20467994 20468331 -4244748 + BSR/Beta Satellite Satellite 1 336 -6 591 247 4 38 chrY 20468407 20468667 -4244412 + BSR/Beta Satellite Satellite 1 251 -32 247 330 11 0 chrY 20468736 20468824 -4244255 + BSR/Beta Satellite Satellite 43 131 -11 622 261 11 31 chrY 20468890 20469500 -4243579 + BSR/Beta Satellite Satellite 1 597 -27 355 341 18 11 chrY 20469670 20469888 -4243191 + BSR/Beta Satellite Satellite 1 219 -7 1462 261 22 21 chrY 20469908 20470732 -4242347 + BSR/Beta Satellite Satellite 1 824 -38 1292 303 20 7 chrY 20470808 20471607 -4241472 + BSR/Beta Satellite Satellite 1 810 -35 189 178 0 0 chrY 20471611 20471656 -4241423 + A-rich Low_complexity Low_complexity 4 48 0 535 273 19 25 chrY 20471681 20472522 -4240557 + BSR/Beta Satellite Satellite 1 835 -42 1308 277 25 14 chrY 20472593 20474501 -4238578 + BSR/Beta Satellite Satellite 1 1929 -6 1410 257 0 0 chrY 20474608 20474904 -4238175 + BSR/Beta Satellite Satellite 35 330 -49 535 289 12 21 chrY 20474967 20475291 -4237788 + BSR/Beta Satellite Satellite 1 321 -10 559 274 12 45 chrY 20475487 20476210 -4236869 + BSR/Beta Satellite Satellite 1 699 -6 1359 290 16 20 chrY 20476264 20476968 -4236111 + BSR/Beta Satellite Satellite 1 701 0 742 267 24 27 chrY 20477012 20477937 -4235142 + BSR/Beta Satellite Satellite 1 922 -178 520 277 15 34 chrY 20477952 20478241 -4234838 + BSR/Beta Satellite Satellite 1 283 -43 547 266 25 33 chrY 20478558 20479256 -4233823 + BSR/Beta Satellite Satellite 1 692 -7 274 380 0 0 chrY 20479365 20479522 -4233557 + BSR/Beta Satellite Satellite 1 157 -1 1346 285 31 3 chrY 20479575 20479989 -4233090 + BSR/Beta Satellite Satellite 1 425 -12 538 264 15 8 chrY 20480114 20480439 -4232640 + BSR/Beta Satellite Satellite 1 327 -34 1245 264 24 39 chrY 20480509 20482132 -4230947 + BSR/Beta Satellite Satellite 1 1599 -27 304 304 11 11 chrY 20482146 20482238 -4230841 + BSR/Beta Satellite Satellite 5 96 -46 1099 273 9 19 chrY 20482253 20482575 -4230504 + BSR/Beta Satellite Satellite 45 363 -16 1042 304 3 3 chrY 20482591 20483051 -4230028 + BSR/Beta Satellite Satellite 1 460 -47 643 242 16 18 chrY 20483112 20483704 -4229375 + BSR/Beta Satellite Satellite 1 591 -44 2296 106 0 3 chrY 20483709 20484021 -4229058 - AluY SINE Alu 0 311 1 591 257 36 28 chrY 20484044 20484498 -4228581 + BSR/Beta Satellite Satellite 1 457 -6 1298 312 10 12 chrY 20484595 20484999 -4228080 + BSR/Beta Satellite Satellite 1 402 -10 466 307 9 35 chrY 20485010 20485430 -4227649 + BSR/Beta Satellite Satellite 1 409 -11 654 250 9 42 chrY 20485497 20485999 -4227080 + BSR/Beta Satellite Satellite 1 485 -4 259 295 49 16 chrY 20486074 20486196 -4226883 + BSR/Beta Satellite Satellite 1 126 -16 1154 290 17 25 chrY 20486297 20486389 -4226690 + BSR/Beta Satellite Satellite 1 92 -2040 1857 122 47 4 chrY 20486389 20486692 -4226387 + AluSq SINE Alu 1 313 0 1154 290 17 25 chrY 20486692 20488382 -4224697 + BSR/Beta Satellite Satellite 92 2068 -64 629 262 15 24 chrY 20488442 20489443 -4223636 + BSR/Beta Satellite Satellite 1 991 -43 1308 304 15 18 chrY 20489575 20490279 -4222800 + BSR/Beta Satellite Satellite 1 701 0 604 261 10 24 chrY 20490463 20491102 -4221977 + BSR/Beta Satellite Satellite 1 630 -9 313 330 42 20 chrY 20491221 20491474 -4221605 + BSR/Beta Satellite Satellite 1 258 -4 261 222 0 19 chrY 20491492 20491546 -4221533 + BSR/Beta Satellite Satellite 1 53 -326 2278 208 27 29 chrY 20491564 20492083 -4220996 - LTR22 LTR ERVK -62 518 1 471 281 12 7 chrY 20492083 20492265 -4220814 + BSR/Beta Satellite Satellite 1 182 0 1278 287 15 11 chrY 20492311 20493518 -4219561 + BSR/Beta Satellite Satellite 1 1211 -53 619 239 16 19 chrY 20493555 20493814 -4219265 + BSR/Beta Satellite Satellite 1 258 -51 613 248 19 9 chrY 20493860 20494529 -4218550 + BSR/Beta Satellite Satellite 1 675 -6 1423 266 15 26 chrY 20494632 20496126 -4216953 + BSR/Beta Satellite Satellite 1 1477 -37 235 281 0 0 chrY 20496163 20496227 -4216852 + BSR/Beta Satellite Satellite 15 78 -64 386 305 33 20 chrY 20496275 20496480 -4216599 + BSR/Beta Satellite Satellite 1 207 0 1012 289 17 2 chrY 20496574 20496944 -4216135 + BSR/Beta Satellite Satellite 1 375 0 674 271 5 27 chrY 20497003 20497354 -4215725 + BSR/Beta Satellite Satellite 1 343 -30 983 311 23 12 chrY 20497425 20498084 -4214995 + BSR/Beta Satellite Satellite 1 666 -49 363 263 10 38 chrY 20498096 20498262 -4214817 + BSR/Beta Satellite Satellite 1 161 -7 652 257 10 26 chrY 20498277 20499357 -4213722 + BSR/Beta Satellite Satellite 1 1062 -6 765 275 9 95 chrY 20499475 20499664 -4213415 + BSR/Beta Satellite Satellite 42 196 -183 1731 159 0 4 chrY 20499664 20499971 -4213108 - AluSc SINE Alu 0 308 3 765 275 9 95 chrY 20499971 20500096 -4212983 + BSR/Beta Satellite Satellite 196 330 -49 582 291 11 27 chrY 20500159 20500561 -4212518 + BSR/Beta Satellite Satellite 1 395 -1 608 279 7 24 chrY 20500603 20501302 -4211777 + BSR/Beta Satellite Satellite 1 687 -21 369 357 14 0 chrY 20501387 20501556 -4211523 + BSR/Beta Satellite Satellite 1 171 -6 1348 270 23 10 chrY 20501629 20503346 -4209733 + BSR/Beta Satellite Satellite 1 1739 -12 676 260 19 28 chrY 20503465 20504807 -4208272 + BSR/Beta Satellite Satellite 1 1329 0 298 305 40 33 chrY 20505041 20505240 -4207839 + BSR/Beta Satellite Satellite 1 200 -7 1193 274 20 24 chrY 20505253 20506545 -4206534 + BSR/Beta Satellite Satellite 1 1286 -13 1034 299 13 2 chrY 20506561 20507024 -4206055 + BSR/Beta Satellite Satellite 1 468 -35 669 244 33 6 chrY 20507041 20507229 -4205850 + BSR/Beta Satellite Satellite 1 193 -46 566 259 11 40 chrY 20507242 20507923 -4205156 + BSR/Beta Satellite Satellite 1 661 -5 1119 265 24 21 chrY 20507958 20508286 -4204793 + BSR/Beta Satellite Satellite 35 363 -16 596 319 0 2 chrY 20508344 20508655 -4204424 + BSR/Beta Satellite Satellite 1 310 -47 562 256 27 25 chrY 20508716 20509774 -4203305 + BSR/Beta Satellite Satellite 1 1060 -7 1368 281 9 12 chrY 20509869 20510451 -4202628 + BSR/Beta Satellite Satellite 1 580 -45 227 356 29 0 chrY 20510506 20510610 -4202469 + BSR/Beta Satellite Satellite 3 109 -33 294 321 28 0 chrY 20510641 20510750 -4202329 + BSR/Beta Satellite Satellite 37 148 -4 546 279 4 34 chrY 20510767 20511331 -4201748 + BSR/Beta Satellite Satellite 1 547 -2 225 184 197 26 chrY 20511389 20511465 -4201614 + BSR/Beta Satellite Satellite 64 152 0 369 331 23 0 chrY 20511539 20511672 -4201407 + BSR/Beta Satellite Satellite 2 137 -15 751 289 63 29 chrY 20511706 20512193 -4200886 + BSR/Beta Satellite Satellite 1 503 0 403 273 0 72 chrY 20512206 20512345 -4200734 + BSR/Beta Satellite Satellite 14 142 0 * 697 247 19 10 chrY 20512245 20512655 -4200424 + BSR/Beta Satellite Satellite 1 413 -46 1150 312 16 4 chrY 20512669 20513328 -4199751 + BSR/Beta Satellite Satellite 1 666 -49 543 273 14 23 chrY 20513344 20514166 -4198913 + BSR/Beta Satellite Satellite 1 814 -3 514 303 12 22 chrY 20514177 20514458 -4198621 + BSR/Beta Satellite Satellite 1 278 0 657 324 22 22 chrY 20514548 20514826 -4198253 + BSR/Beta Satellite Satellite 21 298 -81 9060 184 16 14 chrY 20514828 20517432 -4195647 + MER61B-int LTR ERV1 2141 4818 -399 855 70 0 0 chrY 20517434 20517549 -4195530 + (TTTC)n Simple_repeat Simple_repeat 1 115 0 1685 201 18 18 chrY 20517551 20517894 -4195185 + MER61B-int LTR ERV1 4875 5217 0 2169 194 23 44 chrY 20517894 20518328 -4194751 + MER61B LTR ERV1 1 425 0 481 263 45 20 chrY 20518335 20518533 -4194546 - L1M4 LINE L1 -1272 4874 4672 1302 232 4 4 chrY 20518586 20518858 -4194221 + AluJb SINE Alu 14 285 -27 240 59 0 0 chrY 20518885 20518919 -4194160 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 2879 194 24 26 chrY 20519014 20519590 -4193489 - LTR22 LTR ERVK -3 577 3 5214 194 45 31 chrY 20519592 20520265 -4192814 - HERVK22 LTR ERVK 0 6837 6175 3648 32 0 0 chrY 20520265 20520672 -4192407 - L1PA3 LINE L1 -1 6154 5748 5214 194 45 31 chrY 20520672 20522472 -4190607 - HERVK22 LTR ERVK -662 6175 2027 570 252 58 0 chrY 20522467 20522606 -4190473 - HERVK22 LTR ERVK -4364 2473 2327 * 2015 219 36 0 chrY 20523001 20523394 -4189685 - HERVK22 LTR ERVK -6142 695 289 639 168 10 0 chrY 20523404 20523505 -4189574 - LTR12 LTR ERV1 0 714 613 299 256 11 0 chrY 20523505 20523595 -4189484 - LTR30 LTR ERV1 -79 643 553 1502 143 118 9 chrY 20523596 20523974 -4189105 - LTR12 LTR ERV1 -406 2032 1 6289 115 6 0 chrY 20523974 20524863 -4188216 - HERV9 LTR ERV1 0 8399 7506 810 103 291 0 chrY 20524868 20525102 -4187977 - Harlequin LTR ERV1 -5755 1141 840 27352 113 14 9 chrY 20525103 20527454 -4185625 - Harlequin LTR ERV1 -1994 444 2483 2711 7 0 0 chrY 20527454 20527745 -4185334 - AluYa5 SINE Alu -20 291 1 27352 113 14 9 chrY 20527745 20530200 -4182879 - Harlequin LTR ERV1 46 2484 43 4408 118 106 86 chrY 20530201 20531011 -4182068 - LTR12 LTR ERV1 0 826 1 1511 146 0 66 chrY 20531016 20531304 -4181775 - HERVK22 LTR ERVK -6560 277 9 2428 207 49 27 chrY 20531348 20531903 -4181176 - LTR22 LTR ERVK -13 567 1 453 309 32 14 chrY 20531961 20532181 -4180898 - L1 LINE L1 -3276 2870 2647 193 138 17 17 chrY 20532210 20532268 -4180811 + T-rich Low_complexity Low_complexity 2 59 0 214 85 21 43 chrY 20532414 20532461 -4180618 + (TTTTTA)n Simple_repeat Simple_repeat 2 47 0 202 238 20 14 chrY 20532478 20532625 -4180454 + T-rich Low_complexity Low_complexity 3 150 0 204 256 49 0 chrY 20532636 20532718 -4180361 + T-rich Low_complexity Low_complexity 5 90 0 1303 242 44 30 chrY 20533131 20533428 -4179651 - AluSx SINE Alu 0 302 2 180 0 0 0 chrY 20533892 20533912 -4179167 + (T)n Simple_repeat Simple_repeat 1 20 0 1462 233 3 39 chrY 20534291 20534622 -4178457 - LTR32 LTR ERVL -41 430 112 415 175 0 0 chrY 20534616 20534679 -4178400 - AluS SINE Alu -6 294 232 * 738 162 34 0 chrY 20534679 20534796 -4178283 - AluSp SINE Alu -118 195 75 600 248 0 0 chrY 20534800 20534925 -4178154 - FLAM_C SINE Alu -8 125 1 1159 191 37 0 chrY 20536268 20536483 -4176596 - AluSq SINE Alu -86 227 5 30 0 0 0 chrY 20537653 20537683 -4175396 + AT_rich Low_complexity Low_complexity 1 30 0 5276 268 7 23 chrY 20537700 20539456 -4173623 + L1PA12 LINE L1 1 2004 -5577 3469 286 192 30 chrY 20539454 20541109 -4171970 + L1PA13 LINE L1 339 2262 -4525 * 233 235 0 85 chrY 20541225 20541378 -4171701 + A-rich Low_complexity Low_complexity 2 141 0 497 348 19 3 chrY 20541401 20541711 -4171368 + L1M4c LINE L1 1358 1672 -4712 251 282 19 0 chrY 20541735 20541838 -4171241 + L1M4c LINE L1 2452 2556 -3826 38451 96 8 4 chrY 20541890 20548015 -4165064 - L1PA5 LINE L1 -1 6153 2 557 276 148 17 chrY 20548022 20548443 -4164636 + L1M4c LINE L1 2594 3070 -3312 336 24 0 0 chrY 20548447 20548488 -4164591 + (TG)n Simple_repeat Simple_repeat 2 42 0 1316 176 0 127 chrY 20548488 20548812 -4164267 - AluSc SINE Alu -16 283 1 293 281 40 48 chrY 20548938 20549166 -4163913 + L1 LINE L1 4616 4842 -1304 743 267 23 19 chrY 20549167 20549729 -4163350 + BSR/Beta Satellite Satellite 1 564 -121 25 0 0 0 chrY 20549749 20549774 -4163305 + AT_rich Low_complexity Low_complexity 1 25 0 1936 166 0 0 chrY 20549774 20550082 -4162997 - AluY SINE Alu -3 308 1 365 197 0 0 chrY 20550092 20550153 -4162926 + BSR/Beta Satellite Satellite 279 339 -40 1221 297 10 25 chrY 20550203 20550854 -4162225 + BSR/Beta Satellite Satellite 1 641 -1 578 262 17 22 chrY 20550867 20551785 -4161294 + BSR/Beta Satellite Satellite 1 913 -6 1183 298 16 9 chrY 20551884 20552487 -4160592 + BSR/Beta Satellite Satellite 1 607 -15 509 269 28 19 chrY 20552721 20552928 -4160151 + BSR/Beta Satellite Satellite 1 208 -1 621 247 33 24 chrY 20552939 20553730 -4159349 + BSR/Beta Satellite Satellite 1 798 -45 4177 140 174 16 chrY 20553731 20554686 -4158393 + MER11B LTR ERVK 1 1213 -23 478 272 25 0 chrY 20554707 20554884 -4158195 + BSR/Beta Satellite Satellite 1 181 0 959 307 17 17 chrY 20554979 20555715 -4157364 + BSR/Beta Satellite Satellite 1 735 -33 547 272 13 46 chrY 20555841 20556448 -4156631 + BSR/Beta Satellite Satellite 1 586 -42 320 317 20 20 chrY 20556613 20556755 -4156324 + BSR/Beta Satellite Satellite 1 142 -1 1261 275 16 21 chrY 20556870 20558101 -4154978 + BSR/Beta Satellite Satellite 1 1225 -13 750 294 80 0 chrY 20558114 20558352 -4154727 + BSR/Beta Satellite Satellite 1 257 -122 294 225 18 63 chrY 20558420 20558531 -4154548 + BSR/Beta Satellite Satellite 31 136 0 * 462 281 5 0 chrY 20558439 20558559 -4154520 + BSR/Beta Satellite Satellite 1 120 -43 680 267 21 27 chrY 20558679 20559653 -4153426 + BSR/Beta Satellite Satellite 1 968 -34 890 258 39 78 chrY 20559775 20560132 -4152947 + BSR/Beta Satellite Satellite 26 368 -11 474 300 4 21 chrY 20560155 20560340 -4152739 + BSR/Beta Satellite Satellite 1 181 -3 417 196 131 0 chrY 20560352 20560459 -4152620 + AluSp/q SINE Alu 192 312 -1 355 239 22 109 chrY 20560459 20560597 -4152482 + BSR/Beta Satellite Satellite 17 142 0 572 275 23 24 chrY 20560685 20561485 -4151594 + BSR/Beta Satellite Satellite 1 799 -12 282 354 13 4 chrY 20561582 20561728 -4151351 + BSR/Beta Satellite Satellite 1 147 -30 1205 282 19 0 chrY 20561801 20562228 -4150851 + BSR/Beta Satellite Satellite 1 435 0 483 295 15 23 chrY 20562241 20562523 -4150556 + BSR/Beta Satellite Satellite 1 279 -10 225 244 0 0 chrY 20562551 20562596 -4150483 + BSR/Beta Satellite Satellite 52 96 -46 239 286 77 33 chrY 20562622 20562713 -4150366 - BSR/Beta Satellite Satellite -18 134 40 584 274 17 23 chrY 20562760 20563503 -4149576 - BSR/Beta Satellite Satellite 0 738 1 659 262 6 35 chrY 20563617 20564028 -4149051 - BSR/Beta Satellite Satellite -4 398 1 1246 306 15 18 chrY 20564054 20565633 -4147446 - BSR/Beta Satellite Satellite -5 1572 1 35110 106 27 7 chrY 20565705 20570795 -4142284 + L1PA5 LINE L1 3 5195 -951 4875 92 3 0 chrY 20570798 20571421 -4141658 + L1PA5 LINE L1 5530 6154 0 661 254 19 18 chrY 20571544 20572132 -4140947 - BSR/Beta Satellite Satellite 0 588 1 431 261 54 13 chrY 20572145 20572292 -4140787 - BSR/Beta Satellite Satellite 0 152 1 1269 267 15 32 chrY 20572341 20573241 -4139838 - BSR/Beta Satellite Satellite -5 884 1 531 281 1 35 chrY 20573255 20573702 -4139377 - BSR/Beta Satellite Satellite -6 432 1 1023 261 66 32 chrY 20573715 20573812 -4139267 - BSR/Beta Satellite Satellite -45 1433 1341 8361 53 1 0 chrY 20573812 20574777 -4138302 + LTR5 LTR ERVK 1 966 -3 1023 261 66 32 chrY 20574777 20575101 -4137978 - BSR/Beta Satellite Satellite -137 1341 1 337 343 22 8 chrY 20575153 20575372 -4137707 - BSR/Beta Satellite Satellite -3 222 1 698 262 9 34 chrY 20575418 20576126 -4136953 - BSR/Beta Satellite Satellite 0 690 1 1320 266 14 13 chrY 20576409 20577025 -4136054 - BSR/Beta Satellite Satellite -49 616 1 599 253 15 37 chrY 20577121 20578161 -4134918 - BSR/Beta Satellite Satellite 0 1016 1 970 289 8 10 chrY 20578226 20578892 -4134187 - BSR/Beta Satellite Satellite -2 664 1 542 270 34 36 chrY 20579126 20580142 -4132937 - BSR/Beta Satellite Satellite 0 1013 1 1263 317 3 8 chrY 20580173 20580683 -4132396 - BSR/Beta Satellite Satellite -44 507 1 1360 274 16 8 chrY 20580702 20581916 -4131163 - BSR/Beta Satellite Satellite -44 1223 1 282 348 35 14 chrY 20582005 20582146 -4130933 - BSR/Beta Satellite Satellite -6 146 3 581 271 11 19 chrY 20582303 20582696 -4130383 - BSR/Beta Satellite Satellite -4 390 1 568 291 6 24 chrY 20582711 20582994 -4130085 - BSR/Beta Satellite Satellite -44 277 1 634 278 9 24 chrY 20583060 20583473 -4129606 - BSR/Beta Satellite Satellite -4 406 1 838 285 65 27 chrY 20583508 20583795 -4129284 - BSR/Beta Satellite Satellite -29 297 1 484 322 7 0 chrY 20583904 20584105 -4128974 - BSR/Beta Satellite Satellite -2 202 1 479 289 21 10 chrY 20584190 20584704 -4128375 - BSR/Beta Satellite Satellite 0 519 1 30 0 0 0 chrY 20584707 20584737 -4128342 + AT_rich Low_complexity Low_complexity 1 30 0 436 252 41 44 chrY 20584748 20584978 -4128101 - BSR/Beta Satellite Satellite -18 229 1 348 278 14 62 chrY 20584994 20585138 -4127941 - BSR/Beta Satellite Satellite -4 138 2 598 280 7 102 chrY 20585218 20585522 -4127557 - BSR/Beta Satellite Satellite -100 279 5 1234 272 17 23 chrY 20585542 20586553 -4126526 - BSR/Beta Satellite Satellite -44 1004 1 355 336 9 9 chrY 20586571 20586774 -4126305 - BSR/Beta Satellite Satellite -52 203 1 515 237 61 44 chrY 20586886 20586975 -4126104 - BSR/Beta Satellite Satellite 0 645 559 1725 131 0 33 chrY 20586975 20587249 -4125830 - AluY SINE Alu 0 311 47 515 237 61 44 chrY 20587249 20587520 -4125559 - BSR/Beta Satellite Satellite -86 559 1 616 217 11 35 chrY 20587533 20587752 -4125327 - BSR/Beta Satellite Satellite 0 213 1 1162 295 15 11 chrY 20587935 20588630 -4124449 - BSR/Beta Satellite Satellite -49 698 1 1167 274 20 31 chrY 20588821 20591212 -4121867 - BSR/Beta Satellite Satellite 0 2365 1 307 274 30 15 chrY 20591223 20591358 -4121721 - L1 LINE L1 -1314 4832 4696 201 167 0 0 chrY 20591358 20591394 -4121685 + T-rich Low_complexity Low_complexity 1 36 0 32573 53 7 2 chrY 20591401 20596159 -4116920 - L1PA4 LINE L1 -141 6014 1230 919 70 31 0 chrY 20596159 20596287 -4116792 + L1PA4 LINE L1 1111 1242 -4904 2121 126 3 3 chrY 20596395 20596705 -4116374 + AluY SINE Alu 1 310 -1 243 274 0 0 chrY 20596721 20596783 -4116296 - L1 LINE L1 -1563 4583 4522 1513 223 7 3 chrY 20596811 20597116 -4115963 + AluSc SINE Alu 1 306 -3 574 285 107 60 chrY 20597128 20597757 -4115322 - L1M4c LINE L1 -3280 3102 2445 2966 163 36 12 chrY 20597840 20598430 -4114649 + LTR10E LTR ERV1 9 612 -21 350 313 67 17 chrY 20598435 20598675 -4114404 - L1M4c LINE L1 -4784 1600 1349 212 186 17 34 chrY 20598730 20598789 -4114290 + T-rich Low_complexity Low_complexity 3 60 0 359 20 0 20 chrY 20599157 20599206 -4113873 + (TTTTA)n Simple_repeat Simple_repeat 2 49 0 1476 199 0 0 chrY 20599215 20599481 -4113598 - AluSq SINE Alu -39 274 9 1289 262 55 19 chrY 20601337 20601860 -4111219 - L1PA13 LINE L1 -3735 3062 2521 1378 300 16 5 chrY 20601877 20602260 -4110819 - L1PA13 LINE L1 -6055 732 346 * 6099 257 173 2 chrY 20602259 20603972 -4109107 - L1PA12 LINE L1 -5574 2007 1 1464 209 50 0 chrY 20604011 20604130 -4108949 + AluSc SINE Alu 1 113 -196 200 59 29 0 chrY 20604130 20604164 -4108915 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 1464 209 50 0 chrY 20604164 20604327 -4108752 + AluSc SINE Alu 113 297 -12 1627 186 14 7 chrY 20606258 20606548 -4106531 - AluY SINE Alu -19 292 1 23 0 0 0 chrY 20606830 20606853 -4106226 + AT_rich Low_complexity Low_complexity 1 23 0 39067 48 23 1 chrY 20606858 20612873 -4100206 - L1PA2 LINE L1 -4 6151 4 1492 246 23 63 chrY 20615396 20615513 -4097566 + LTR32 LTR ERVL 15 135 -336 1776 192 3 0 chrY 20615513 20615815 -4097264 + AluSp SINE Alu 1 303 -10 1492 246 23 63 chrY 20615815 20616172 -4096907 + LTR32 LTR ERVL 135 470 -1 590 51 0 0 chrY 20616953 20617031 -4096048 - L1PA4 LINE L1 -3542 2604 2527 21217 61 6 22 chrY 20617031 20620598 -4092481 + L1PA4 LINE L1 2606 6152 -3 189 0 0 0 chrY 20620621 20620642 -4092437 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 341 367 44 24 chrY 20620708 20620956 -4092123 + L1M4c LINE L1 907 1159 -4982 214 250 0 15 chrY 20621044 20621112 -4091967 + A-rich Low_complexity Low_complexity 3 69 0 259 315 51 23 chrY 20621173 20621430 -4091649 + L1M4c LINE L1 1198 1461 -4751 508 268 103 40 chrY 20621484 20622088 -4090991 + L1M4c LINE L1 2298 2939 -3271 1473 214 10 16 chrY 20622090 20622398 -4090681 - AluSc SINE Alu -3 306 1 240 266 64 0 chrY 20622425 20622534 -4090545 + L1 LINE L1 4521 4636 -1510 251 371 51 40 chrY 20623350 20623525 -4089554 + L3 LINE CR1 1109 1285 -292 513 243 145 38 chrY 20724891 20725126 -3987953 - MIR SINE MIR -1 261 2 21 36 0 0 chrY 20726397 20726425 -3986654 + AT_rich Low_complexity Low_complexity 1 28 0 235 342 114 11 chrY 20727172 20727356 -3985723 + L3 LINE CR1 195 397 -1180 297 123 0 41 chrY 20727673 20727746 -3985333 + (TA)n Simple_repeat Simple_repeat 1 70 0 1427 212 10 14 chrY 20728027 20728324 -3984755 + AluSx SINE Alu 1 296 -16 1465 217 11 3 chrY 20728518 20728804 -3984275 - AluJb SINE Alu -24 288 1 372 366 84 36 chrY 20729005 20729314 -3983765 - L2 LINE L2 -5 3267 2944 186 43 0 0 chrY 20730235 20730258 -3982821 + (TAAAAA)n Simple_repeat Simple_repeat 2 24 0 3412 108 28 4 chrY 20730715 20731156 -3981923 + MER9 LTR ERVK 1 457 -54 342 0 0 0 chrY 20731156 20731194 -3981885 + (TG)n Simple_repeat Simple_repeat 1 38 0 3412 108 28 4 chrY 20731194 20731251 -3981828 + MER9 LTR ERVK 457 511 0 3695 109 28 3 chrY 20731251 20731829 -3981250 + HERVK9 LTR ERVK 1 592 -5324 5314 97 1 5 chrY 20731829 20732584 -3980495 + HERVK9 LTR ERVK 1268 2019 -3897 241 191 0 0 chrY 20732836 20732878 -3980201 - LTR33 LTR ERVL -2 519 478 * 717 313 118 6 chrY 20732874 20733206 -3979873 - LTR33 LTR ERVL -149 372 4 258 364 93 0 chrY 20733206 20733344 -3979735 - LTR33 LTR ERVL -370 151 1 306 295 67 51 chrY 20733542 20733796 -3979283 - L1MC5 LINE L1 -37 7924 7667 403 275 44 11 chrY 20733922 20734104 -3978975 - L1MC5 LINE L1 -518 7443 7256 438 295 51 27 chrY 20734242 20734578 -3978501 - L1MC5 LINE L1 -742 7219 6876 244 287 37 93 chrY 20735438 20735546 -3977533 - MER5B DNA MER1_type -72 106 5 287 150 38 12 chrY 20736408 20736488 -3976591 + GA-rich Low_complexity Low_complexity 1 82 0 258 331 35 55 chrY 20736855 20737000 -3976079 + MIR SINE MIR 65 206 -56 24 53 0 0 chrY 20738208 20738246 -3974833 + AT_rich Low_complexity Low_complexity 1 38 0 237 264 97 0 chrY 20738825 20738897 -3974182 + MIR SINE MIR 86 164 -98 370 408 25 0 chrY 20739322 20739479 -3973600 + L2 LINE L2 3091 3251 -21 197 163 20 0 chrY 20739492 20739541 -3973538 + (TA)n Simple_repeat Simple_repeat 1 50 0 195 203 0 0 chrY 20740628 20740687 -3972392 + (TG)n Simple_repeat Simple_repeat 2 60 0 23 0 0 0 chrY 20740706 20740729 -3972350 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chrY 20740797 20740820 -3972259 + AT_rich Low_complexity Low_complexity 1 23 0 3299 113 11 4 chrY 20740820 20741344 -3971735 - L1MA1 LINE L1 -6 6296 5769 1259 20 0 0 chrY 20741346 20741493 -3971586 - L1PA2 LINE L1 -3 6152 6006 341 94 0 0 chrY 20741493 20741546 -3971533 - L1MA1 LINE L1 -527 5777 5725 405 109 6 14 chrY 20741550 20741642 -3971437 + L1M1 LINE L1 5587 5668 -483 937 266 4 35 chrY 20742355 20742614 -3970465 + AluJo SINE Alu 8 258 -54 2589 64 0 0 chrY 20745950 20746261 -3966818 + AluY SINE Alu 1 311 0 1150 168 88 118 chrY 20747628 20748092 -3964987 + LTR7 LTR ERV1 1 450 0 347 118 9 55 chrY 20749680 20749790 -3963289 + (TA)n Simple_repeat Simple_repeat 2 106 0 507 96 0 0 chrY 20750281 20750364 -3962715 + (GA)n Simple_repeat Simple_repeat 1 83 0 470 257 129 7 chrY 20750364 20750504 -3962575 - FAM SINE Alu -17 158 2 1010 249 15 15 chrY 20754352 20754645 -3958434 + AluJo SINE Alu 13 305 0 1936 162 7 0 chrY 20754645 20754941 -3958138 + AluSx SINE Alu 1 298 -14 1708 184 0 13 chrY 20756706 20756990 -3956089 + AluSx SINE Alu 1 282 -30 258 32 0 0 chrY 20756990 20757021 -3956058 + (CA)n Simple_repeat Simple_repeat 2 32 0 1708 184 0 13 chrY 20757021 20757045 -3956034 + AluSx SINE Alu 282 305 -7 377 305 119 93 chrY 20759229 20759882 -3953197 + L1M2 LINE L1 472 1141 -5708 485 252 0 9 chrY 20761336 20761443 -3951636 + FLAM_C SINE Alu 13 118 -25 264 122 20 0 chrY 20761446 20761495 -3951584 - MER1B DNA MER1_type -13 326 277 270 108 0 135 chrY 20761659 20761733 -3951346 - MER1B DNA MER1_type -65 274 211 256 161 25 25 chrY 20761880 20761924 -3951155 + L1MA7 LINE L1 6182 6228 -63 696 214 114 68 chrY 20761924 20762204 -3950875 + AluJb SINE Alu 2 294 -8 256 161 25 25 chrY 20762204 20762240 -3950839 + L1MA7 LINE L1 6227 6262 -29 201 245 10 41 chrY 20762691 20762789 -3950290 + (TATG)n Simple_repeat Simple_repeat 2 96 0 2035 133 3 0 chrY 20764550 20764858 -3948221 - AluSc SINE Alu 0 309 1 24 0 0 0 chrY 20766868 20766892 -3946187 + AT_rich Low_complexity Low_complexity 1 24 0 1511 183 7 7 chrY 20766902 20767176 -3945903 + AluSg SINE Alu 5 278 -32 216 0 0 0 chrY 20767176 20767200 -3945879 + (CAAT)n Simple_repeat Simple_repeat 4 27 0 30 0 0 0 chrY 20767469 20767499 -3945580 + AT_rich Low_complexity Low_complexity 1 30 0 951 262 38 31 chrY 20768597 20768887 -3944192 - AluJo SINE Alu -10 292 1 936 285 32 6 chrY 20770364 20770680 -3942399 - L1MB5 LINE L1 -13 6161 5838 1087 208 111 18 chrY 20770752 20771147 -3941932 - L1MB5 LINE L1 -495 5685 5254 1252 227 33 4 chrY 20773100 20773400 -3939679 - AluSg SINE Alu 0 308 1 1440 210 11 14 chrY 20773883 20774169 -3938910 + AluSx SINE Alu 3 287 -15 1240 228 0 44 chrY 20774227 20774547 -3938532 - AluJo SINE Alu -5 307 2 450 273 35 0 chrY 20774594 20774766 -3938313 - L1MA4 LINE L1 -124 6176 5999 233 185 0 0 chrY 20774779 20774833 -3938246 + L1MA4 LINE L1 6236 6289 -11 22 35 0 0 chrY 20774833 20774862 -3938217 + AT_rich Low_complexity Low_complexity 1 29 0 343 339 23 40 chrY 20775110 20775394 -3937685 + L1M3de LINE L1 371 658 -5995 1692 124 120 11 chrY 20775394 20775660 -3937419 - AluSg SINE Alu -15 295 1 343 339 23 40 chrY 20775660 20775717 -3937362 + L1M3de LINE L1 658 1436 -5217 1582 206 37 46 chrY 20775998 20776430 -3936649 + MSTB1 LTR MaLR 4 431 -1 1675 176 0 43 chrY 20776642 20776965 -3936114 - AluSc SINE Alu 0 309 1 546 338 54 37 chrY 20777039 20777500 -3935579 + L1M3b LINE L1 42 510 -5771 238 214 8 120 chrY 20778336 20778453 -3934626 + L1P LINE L1 3463 3566 -2580 472 271 106 7 chrY 20778774 20778925 -3934154 + FRAM SINE Alu 1 166 0 529 187 15 8 chrY 20779533 20779667 -3933412 + CT-rich Low_complexity Low_complexity 2 136 0 1304 236 0 29 chrY 20779686 20779995 -3933084 - AluSx SINE Alu -8 304 5 195 69 0 0 chrY 20780039 20780068 -3933011 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1411 210 7 0 chrY 20780074 20780355 -3932724 - AluSx SINE Alu -29 283 1 295 248 62 26 chrY 20780819 20780932 -3932147 - MLT1F LTR MaLR -37 505 389 789 58 0 0 chrY 20786241 20786344 -3926735 - L1P3 LINE L1 -622 5532 5430 2173 90 3 16 chrY 20786344 20786664 -3926415 + L1PA6 LINE L1 5837 6154 0 21 82 0 0 chrY 20788369 20788418 -3924661 + AT_rich Low_complexity Low_complexity 1 49 0 22 35 0 0 chrY 20788454 20788483 -3924596 + AT_rich Low_complexity Low_complexity 1 29 0 820 228 141 47 chrY 20790192 20790447 -3922632 + AluJo SINE Alu 11 289 -23 186 39 0 0 chrY 20791002 20791028 -3922051 + L2 LINE L2 3284 3309 -4 2623 157 29 100 chrY 20791652 20792385 -3920694 + LTR1 LTR ERV1 1 681 -104 651 162 17 0 chrY 20792767 20792884 -3920195 - MER41E LTR ERV1 -393 119 1 3563 174 42 23 chrY 20794987 20795781 -3917298 - L1PA16 LINE L1 -1 6165 5357 35 24 0 0 chrY 20796294 20796336 -3916743 + AT_rich Low_complexity Low_complexity 1 42 0 2317 109 0 3 chrY 20797333 20797637 -3915442 + AluSc SINE Alu 1 303 -6 22 35 0 0 chrY 20798296 20798325 -3914754 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chrY 20798589 20798611 -3914468 + AT_rich Low_complexity Low_complexity 1 22 0 257 321 43 0 chrY 20798737 20798899 -3914180 - L1ME LINE L1 -653 5511 5343 189 314 29 29 chrY 20799336 20799406 -3913673 + MER5A DNA MER1_type 43 112 -77 225 65 0 0 chrY 20799504 20799535 -3913544 + (CAA)n Simple_repeat Simple_repeat 2 32 0 23 0 0 0 chrY 20800802 20800825 -3912254 + AT_rich Low_complexity Low_complexity 1 23 0 838 111 8 0 chrY 20800836 20800953 -3912126 - AluSc SINE Alu -191 118 1 1745 150 29 0 chrY 20801339 20801619 -3911460 + AluSq SINE Alu 1 288 -25 27 0 0 0 chrY 20802281 20802308 -3910771 + AT_rich Low_complexity Low_complexity 1 27 0 365 200 0 22 chrY 20802469 20802559 -3910520 - L1MA9 LINE L1 -147 6165 6078 1124 71 11 27 chrY 20803877 20804060 -3909019 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 216 0 0 0 chrY 20805464 20805488 -3907591 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1989 124 17 7 chrY 20806867 20807166 -3905913 - AluY SINE Alu 0 311 10 22 35 0 0 chrY 20807553 20807582 -3905497 + AT_rich Low_complexity Low_complexity 1 29 0 1551 197 11 3 chrY 20807808 20808092 -3904987 + AluSx SINE Alu 2 287 -25 23 0 0 0 chrY 20808092 20808115 -3904964 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chrY 20808200 20808229 -3904850 + AT_rich Low_complexity Low_complexity 1 29 0 52 64 0 0 chrY 20808468 20808562 -3904517 + AT_rich Low_complexity Low_complexity 1 94 0 405 0 0 0 chrY 20808573 20808618 -3904461 + (TG)n Simple_repeat Simple_repeat 2 46 0 207 364 8 8 chrY 20809478 20809599 -3903480 + (CAA)n Simple_repeat Simple_repeat 2 122 0 381 218 0 0 chrY 20810013 20810137 -3902942 + GA-rich Low_complexity Low_complexity 1 124 0 201 147 0 0 chrY 20810603 20810637 -3902442 + (CAA)n Simple_repeat Simple_repeat 2 35 0 2043 51 0 0 chrY 20811072 20811328 -3901751 - L1PA4 LINE L1 -1 6154 5899 2813 148 62 6 chrY 20811751 20812218 -3900861 + MER1A DNA MER1_type 31 523 -6 195 42 0 0 chrY 20813643 20813667 -3899412 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 3074 155 29 39 chrY 20814236 20814798 -3898281 + LTR6A LTR ERV1 9 564 0 3221 109 15 0 chrY 20815396 20816209 -3896870 + L1P2 LINE L1 4909 5734 -420 13521 164 3 7 chrY 20816209 20818444 -3894635 + HERVK22 LTR ERVK 46 2271 -4566 1964 183 27 155 chrY 20818444 20819084 -3893995 - LTR6A LTR ERV1 0 564 1 2389 171 2 14 chrY 20819084 20819510 -3893569 + HERVK22 LTR ERVK 2267 2687 -4150 277 30 0 0 chrY 20819516 20819549 -3893530 - HERVK22 LTR ERVK -4734 2103 2071 12885 153 1 6 chrY 20819549 20821639 -3891440 + HERVK22 LTR ERVK 2695 4773 -2064 2705 182 15 26 chrY 20821638 20822249 -3890830 + pTR5 LTR ERV1 742 1345 -1093 * 4092 129 15 128 chrY 20822264 20823191 -3889888 + LTR12 LTR ERV1 5 826 0 7990 163 9 13 chrY 20823191 20825153 -3887926 + HERVK22 LTR ERVK 4770 6835 -2 2883 188 25 3 chrY 20825154 20825722 -3887357 + LTR22 LTR ERVK 1 580 0 310 289 24 15 chrY 20826047 20826231 -3886848 + L1M4b LINE L1 1352 1665 -5282 622 232 7 21 chrY 20826347 20826489 -3886590 + MLT1D LTR MaLR 301 440 -65 429 321 95 34 chrY 20826748 20827044 -3886035 - L2 LINE L2 -583 2731 2418 234 0 0 0 chrY 20827183 20827209 -3885870 + (A)n Simple_repeat Simple_repeat 1 26 0 223 331 91 0 chrY 20827446 20827567 -3885512 + MIR SINE MIR 53 184 -78 36 53 0 0 chrY 20828166 20828223 -3884856 + AT_rich Low_complexity Low_complexity 1 57 0 1319 169 16 93 chrY 20828390 20828703 -3884376 - MER52C LTR ERV1 0 1278 990 1084 97 0 0 chrY 20828804 20828949 -3884130 - AluY SINE Alu -4 307 163 1780 176 6 10 chrY 20829130 20829443 -3883636 + AluSx SINE Alu 1 312 0 10192 131 8 0 chrY 20829443 20831951 -3881128 + L1PA7 LINE L1 3596 6146 -8 415 225 70 7 chrY 20832537 20832679 -3880400 + L1M4 LINE L1 4457 4607 -1539 2025 140 0 0 chrY 20834155 20834448 -3878631 - AluSp SINE Alu -20 293 1 184 360 70 10 chrY 20834730 20834830 -3878249 + L2 LINE L2 3204 3309 -4 257 314 82 36 chrY 20834943 20835137 -3877942 - LTR67 LTR ERVL -8 549 347 384 22 0 0 chrY 20838428 20838473 -3874606 + (CA)n Simple_repeat Simple_repeat 2 46 0 1991 113 11 3 chrY 20839730 20840013 -3873066 + AluSq SINE Alu 9 293 -20 431 275 74 35 chrY 20840819 20841048 -3872031 - MIR SINE MIR -9 253 16 21 0 0 0 chrY 20843083 20843104 -3869975 + AT_rich Low_complexity Low_complexity 1 21 0 354 247 11 11 chrY 20843758 20843851 -3869228 + MER94 DNA DNA 8 100 -34 21 36 0 0 chrY 20844938 20844966 -3868113 + AT_rich Low_complexity Low_complexity 1 28 0 1703 129 0 110 chrY 20845789 20846126 -3866953 + AluSx SINE Alu 2 303 0 587 144 0 0 chrY 20847775 20847865 -3865214 - AluJ/FLAM SINE Alu -222 90 1 607 143 0 0 chrY 20848089 20848180 -3864899 - FLAM_C SINE Alu -20 123 33 954 45 0 30 chrY 20848180 20848313 -3864766 + L1PA4 LINE L1 6027 6155 0 1296 184 36 18 chrY 20848650 20848927 -3864152 - AluJo SINE Alu -30 282 1 1011 114 0 0 chrY 20849209 20849341 -3863738 - AluJb SINE Alu -13 299 168 1772 129 8 16 chrY 20849341 20849596 -3863483 - AluJb SINE Alu -36 276 24 2306 101 0 0 chrY 20849893 20850190 -3862889 - AluSx SINE Alu -15 297 1 22 0 0 0 chrY 20850437 20850459 -3862620 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chrY 20850667 20850693 -3862386 + AT_rich Low_complexity Low_complexity 1 26 0 3944 77 34 0 chrY 20850716 20851251 -3861828 + MER41A LTR ERV1 1 553 -1 255 314 0 0 chrY 20851502 20851588 -3861491 - L1 LINE L1 -1332 4814 4729 325 306 77 55 chrY 20852209 20852392 -3860687 + L2 LINE L2 3059 3245 -27 303 418 0 7 chrY 20852383 20852536 -3860543 - L2 LINE L2 -602 2712 2561 * 195 139 0 0 chrY 20852685 20852721 -3860358 + (A)n Simple_repeat Simple_repeat 1 36 0 407 356 0 12 chrY 20853780 20853940 -3859139 - MER5B DNA MER1_type -20 158 1 1732 173 23 13 chrY 20854263 20854564 -3858515 + AluJb SINE Alu 1 304 -8 218 341 49 12 chrY 20855079 20855161 -3857918 + L2 LINE L2 3225 3309 -4 259 213 98 0 chrY 20855195 20855256 -3857823 + MIR SINE MIR 45 111 -97 2049 141 7 0 chrY 20855371 20855670 -3857409 + AluSx SINE Alu 1 301 -11 29 0 0 0 chrY 20856970 20856999 -3856080 + AT_rich Low_complexity Low_complexity 1 29 0 1535 227 136 22 chrY 20859413 20859963 -3853116 - MLT1E2 LTR MaLR -3 623 11 235 313 48 82 chrY 20861662 20861809 -3851270 - L2 LINE L2 -3 3269 3128 2393 78 10 0 chrY 20861843 20862139 -3850940 + AluY SINE Alu 1 299 -12 216 0 0 0 chrY 20862724 20862748 -3850331 + (TA)n Simple_repeat Simple_repeat 1 24 0 * 360 0 0 0 chrY 20862747 20862787 -3850292 + (GA)n Simple_repeat Simple_repeat 2 41 0 640 179 0 9 chrY 20862800 20862912 -3850167 - FRAM SINE Alu -61 115 5 1441 154 150 11 chrY 20862942 20863202 -3849877 + AluJo SINE Alu 1 296 -6 589 269 126 14 chrY 20863383 20863606 -3849473 + MIR SINE MIR 12 259 -3 629 341 100 55 chrY 20864666 20864901 -3848178 + L2 LINE L2 2154 2377 -937 1650 197 14 0 chrY 20864901 20865191 -3847888 - AluJo SINE Alu -15 297 4 629 341 100 55 chrY 20865191 20865683 -3847396 + L2 LINE L2 2377 2914 -400 377 327 62 0 chrY 20865862 20865975 -3847104 + L2 LINE L2 3137 3256 -16 12137 30 0 0 chrY 20866197 20868405 -3844674 + L1PA2 LINE L1 3947 6155 0 2044 122 7 7 chrY 20869983 20870286 -3842793 - AluSq SINE Alu -10 303 1 22 0 0 0 chrY 20870338 20870360 -3842719 + AT_rich Low_complexity Low_complexity 1 22 0 613 264 32 7 chrY 20871281 20871436 -3841643 + MIR SINE MIR 28 186 -76 203 133 0 0 chrY 20873018 20873048 -3840031 + (CA)n Simple_repeat Simple_repeat 1 30 0 21 36 0 0 chrY 20973877 20973905 -3739174 + AT_rich Low_complexity Low_complexity 1 28 0 3489 17 0 5 chrY 20974259 20974673 -3738406 - L1PA2 LINE L1 -377 5778 5365 3182 34 0 0 chrY 20974673 20975050 -3738029 + L1PA2 LINE L1 5776 6155 0 180 0 0 0 chrY 20975057 20975077 -3738002 + (CA)n Simple_repeat Simple_repeat 1 20 0 335 315 54 8 chrY 20975736 20975866 -3737213 + L2 LINE L2 2824 2959 -355 21 36 0 0 chrY 20976840 20976868 -3736211 + AT_rich Low_complexity Low_complexity 1 28 0 380 309 138 20 chrY 20976908 20977154 -3735925 + L1M4 LINE L1 976 1250 -5292 442 120 13 0 chrY 20977166 20977241 -3735838 + LTR15 LTR ERV1 1 76 -417 2055 113 8 7 chrY 20977243 20977451 -3735628 + HERV15 LTR ERV1 6770 6976 -1759 200 33 0 33 chrY 20977451 20977481 -3735598 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2055 113 8 7 chrY 20977481 20977992 -3735087 + HERV15 LTR ERV1 6976 7642 -1093 804 107 16 0 chrY 20977994 20978115 -3734964 + LTR15 LTR ERV1 355 477 -16 2693 168 25 25 chrY 20978784 20979379 -3733700 + L1PA10 LINE L1 5390 5984 -184 863 130 7 0 chrY 20979375 20979513 -3733566 + L1P LINE L1 1 139 -6007 * 17788 53 1 1 chrY 20979513 20982574 -3730505 + L1PA4 LINE L1 3085 6155 0 954 173 60 0 chrY 20982583 20982751 -3730328 + AluSg/x SINE Alu 118 295 -15 1736 198 71 41 chrY 20982769 20983278 -3729801 - LTR61 LTR ERV1 0 595 72 491 258 0 8 chrY 20983298 20983426 -3729653 - HERV3 LTR ERV1 -17 8409 8283 6254 270 17 16 chrY 20983510 20986188 -3726891 - HERV3 LTR ERV1 -3666 4760 1986 4528 267 40 14 chrY 20986186 20987450 -3725629 - HERV3 LTR ERV1 -6768 1658 363 * 1639 237 0 13 chrY 20987517 20987892 -3725187 - HERV3 LTR ERV1 -8052 374 5 1147 191 40 82 chrY 20987896 20988273 -3724806 - LTR61 LTR ERV1 0 595 235 1658 197 0 25 chrY 20988496 20988816 -3724263 + AluSx SINE Alu 1 312 0 193 304 36 0 chrY 20990509 20990565 -3722514 - MIR SINE MIR -1 261 204 474 232 27 96 chrY 20990582 20990802 -3722277 + MER46C DNA MER2_type 5 209 -129 191 304 157 10 chrY 20990885 20990987 -3722092 - MIR SINE MIR -82 180 64 384 238 4 33 chrY 21091108 21091660 -3621419 + (TTAGGG)n Simple_repeat Simple_repeat 1 535 0 241 208 0 52 chrY 21091804 21091881 -3621198 + (TTAGGG)n Simple_repeat Simple_repeat 3 75 0 189 189 0 49 chrY 21091897 21092019 -3621060 + (TTAGGG)n Simple_repeat Simple_repeat 5 120 0 327 311 0 28 chrY 21092577 21092757 -3620322 + (TTAGGG)n Simple_repeat Simple_repeat 1 175 0 2071 241 67 22 chrY 21093866 21094583 -3618496 + L1MB5 LINE L1 5416 6164 -10 978 218 23 5 chrY 21094753 21094973 -3618106 - MER50 LTR ERV1 0 734 511 392 258 60 6 chrY 21094986 21095153 -3617926 - L1M4 LINE L1 -904 5242 5067 * 498 234 65 27 chrY 21095137 21095321 -3617758 + L1M4 LINE L1 5363 5553 -631 542 130 60 0 chrY 21095321 21095421 -3617658 + L1MB3 LINE L1 6068 6173 -10 1229 266 57 33 chrY 21095656 21096257 -3616822 - L1MC3 LINE L1 -1797 5988 5374 1453 199 13 10 chrY 21097030 21097341 -3615738 - AluSx SINE Alu 0 312 1 240 233 241 0 chrY 21097679 21097795 -3615284 - L1MC3 LINE L1 -947 5397 5254 801 215 9 68 chrY 21097881 21098100 -3614979 - AluSg/x SINE Alu 0 310 105 1621 184 76 45 chrY 21098106 21098525 -3614554 - LTR3b LTR ERVK -5 432 1 10716 222 14 23 chrY 21098531 21102792 -3610287 - HERVK3 LTR ERVK -6 7237 2912 1727 285 16 46 chrY 21102899 21103708 -3609371 - HERVS71 LTR ERV1 -4580 2416 1605 6380 203 42 45 chrY 21103724 21105314 -3607765 + HERVS71 LTR ERV1 330 1914 -7064 2878 179 0 12 chrY 21105312 21105808 -3607271 - HERVS71 LTR ERV1 -6106 2872 2383 * 2605 210 8 0 chrY 21105830 21106330 -3606749 + HUERS-P3 LTR ERV1 1923 2426 -6552 33087 185 14 2 chrY 21106332 21110479 -3602600 + HUERS-P3 LTR ERV1 2879 7120 -1858 219 36 0 0 chrY 21110479 21110507 -3602572 + (TTA)n Simple_repeat Simple_repeat 1 28 0 33087 185 14 2 chrY 21110507 21112319 -3600760 + HUERS-P3 LTR ERV1 7120 8909 -69 3451 140 12 11 chrY 21112319 21112882 -3600197 + LTR6A LTR ERV1 1 564 0 394 218 0 11 chrY 21112884 21112971 -3600108 - HERVS71 LTR ERV1 -7135 1784 1699 338 194 0 0 chrY 21113064 21113136 -3599943 + LTR25 LTR ERV1 220 291 -503 270 0 0 0 chrY 21113345 21113375 -3599704 + (TAA)n Simple_repeat Simple_repeat 2 31 0 438 274 46 100 chrY 21113528 21113769 -3599310 - LTR25 LTR ERV1 -320 474 247 239 250 14 0 chrY 21113797 21113869 -3599210 - LTR25 LTR ERV1 -503 291 219 2755 332 39 22 chrY 21113962 21115294 -3597785 + HUERS-P3 LTR ERV1 1699 3053 -5866 588 269 67 82 chrY 21115329 21115853 -3597226 - LTR25 LTR ERV1 -10 784 269 363 153 14 14 chrY 21115895 21115967 -3597112 - LTR25 LTR ERV1 -501 293 222 1890 277 18 20 chrY 21116093 21117021 -3596058 - HUERS-P3 LTR ERV1 -23 6973 3328 2739 293 14 21 chrY 21117026 21117959 -3595120 - HUERS-P3 LTR ERV1 -5305 3614 2689 1904 267 142 14 chrY 21117959 21118663 -3594416 + LTR25 LTR ERV1 1 794 0 3411 286 45 34 chrY 21118757 21121629 -3591450 + LTR25-int LTR ERV1 228 3125 -4273 186 71 0 0 chrY 21121629 21121657 -3591422 + (CAA)n Simple_repeat Simple_repeat 2 29 0 3411 286 45 34 chrY 21121657 21121715 -3591364 + LTR25-int LTR ERV1 3125 3181 -4217 1867 212 28 26 chrY 21121721 21122184 -3590895 + LTR25 LTR ERV1 1 464 -330 713 284 94 51 chrY 21122226 21122599 -3590480 + LTR25 LTR ERV1 406 794 0 204 40 0 0 chrY 21122680 21122705 -3590374 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 4778 246 71 52 chrY 21122714 21123792 -3589287 + LTR25-int LTR ERV1 1041 2098 -4898 1626 164 13 63 chrY 21123792 21124110 -3588969 - AluSc SINE Alu -7 302 1 4778 246 71 52 chrY 21124110 21126115 -3586964 + LTR25-int LTR ERV1 2098 4065 -2931 207 0 0 0 chrY 21126115 21126138 -3586941 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4778 246 71 52 chrY 21126138 21127065 -3586014 + LTR25-int LTR ERV1 4065 6996 0 2220 252 33 76 chrY 21127067 21127895 -3585184 + LTR25 LTR ERV1 3 794 0 671 322 8 0 chrY 21127913 21128149 -3584930 - HUERS-P3 LTR ERV1 -6228 2691 2454 297 0 0 0 chrY 21128157 21128190 -3584889 + (TC)n Simple_repeat Simple_repeat 2 34 0 531 241 0 9 chrY 21128190 21128532 -3584547 + (TA)n Simple_repeat Simple_repeat 1 338 0 305 168 10 129 chrY 21128541 21128642 -3584437 + L1MC4 LINE L1 6614 6702 -1340 * 318 242 0 66 chrY 21128627 21128718 -3584361 + L1MC4 LINE L1 6614 6698 -1344 5219 291 37 35 chrY 21128820 21131163 -3581916 - HUERS-P3 LTR ERV1 -4605 2391 45 1650 176 14 10 chrY 21131173 21131463 -3581616 - AluY SINE Alu -16 295 5 435 213 107 0 chrY 21131525 21131647 -3581432 - MER61E LTR ERV1 -4 565 431 516 269 107 29 chrY 21131732 21132076 -3581003 - LTR25 LTR ERV1 -239 555 248 1438 349 23 16 chrY 21132272 21132999 -3580080 + HUERS-P3 LTR ERV1 1699 2430 -6489 1426 335 8 0 chrY 21133013 21133481 -3579598 + MER52A LTR ERV1 1279 1750 -5 565 285 7 0 chrY 21133480 21133624 -3579455 + MER21B LTR ERV1 232 376 -487 * 21 71 0 0 chrY 21133989 21134031 -3579048 + AT_rich Low_complexity Low_complexity 1 42 0 1823 111 0 12 chrY 21134589 21134841 -3578238 - AluY SINE Alu -62 249 1 611 242 39 0 chrY 21136749 21136927 -3576152 - L1M4c LINE L1 -4188 2196 2012 5468 160 29 32 chrY 21136934 21137441 -3575638 + MER11C LTR ERVK 1 508 -563 309 26 0 0 chrY 21137441 21137479 -3575600 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 5468 160 29 32 chrY 21137479 21138045 -3575034 + MER11C LTR ERVK 508 1071 0 21 0 0 0 chrY 21138052 21138073 -3575006 + AT_rich Low_complexity Low_complexity 1 21 0 727 204 71 104 chrY 21138112 21138602 -3574477 - L1M4c LINE L1 -4697 1687 1214 1069 269 58 3 chrY 21138745 21139105 -3573974 - LTR25 LTR ERV1 0 794 415 274 212 76 0 chrY 21139094 21139160 -3573919 - LTR25 LTR ERV1 -253 541 471 * 1126 285 60 18 chrY 21139146 21139620 -3573459 - LTR25 LTR ERV1 -69 725 249 373 306 143 0 chrY 21140108 21140303 -3572776 + MER21B LTR ERV1 19 241 -622 477 309 12 35 chrY 21140303 21140608 -3572471 + MER52A LTR ERV1 1 383 -1372 520 259 15 0 chrY 21140685 21140816 -3572263 + MER21B LTR ERV1 247 379 -484 708 244 26 26 chrY 21142041 21142270 -3570809 - L1M4c LINE L1 -4204 2180 1952 1773 272 116 63 chrY 21142337 21143428 -3569651 - L1M4c LINE L1 -4611 1773 741 238 60 20 0 chrY 21143428 21143478 -3569601 - LTR66 LTR ERVL -171 439 389 1773 272 116 63 chrY 21143478 21143489 -3569590 - L1M4c LINE L1 -5643 741 732 195 69 0 0 chrY 21143489 21143518 -3569561 + (TG)n Simple_repeat Simple_repeat 2 30 0 1773 272 116 63 chrY 21143518 21144028 -3569051 - L1M4c LINE L1 -5652 732 23 392 323 117 15 chrY 21144534 21145209 -3567870 - L1M4c LINE L1 -4660 1724 981 22 70 0 0 chrY 21146386 21146429 -3566650 + AT_rich Low_complexity Low_complexity 1 43 0 26 30 0 0 chrY 21146513 21146546 -3566533 + AT_rich Low_complexity Low_complexity 1 33 0 227 348 56 69 chrY 21146551 21146784 -3566295 - L2 LINE L2 -352 2962 2733 236 235 0 0 chrY 21146794 21146845 -3566234 + MER20 DNA MER1_type 96 146 -73 270 237 0 0 chrY 21148636 21148712 -3564367 + (TA)n Simple_repeat Simple_repeat 1 76 0 1450 185 61 15 chrY 21148726 21149055 -3564024 - MLT2A1 LTR ERVL -98 346 3 1514 152 19 0 chrY 21149056 21149366 -3563713 - HERVL-A1 LTR ERVL 0 5654 5339 15781 184 28 5 chrY 21149374 21151546 -3561533 - HERVL-A1 LTR ERVL -2513 3141 876 324 48 0 0 chrY 21151546 21151588 -3561491 + (TG)n Simple_repeat Simple_repeat 1 42 0 15781 184 28 5 chrY 21151588 21152485 -3560594 - HERVL-A1 LTR ERVL -4778 876 1 1813 199 24 8 chrY 21152520 21152902 -3560177 - MLT2A1 LTR ERVL -56 388 1 778 287 98 16 chrY 21152939 21153305 -3559774 + MER52A LTR ERV1 706 1097 -658 3435 275 11 12 chrY 21153305 21154227 -3558852 + MER52A LTR ERV1 895 1753 -2 359 293 18 24 chrY 21154509 21154673 -3558406 - MER20 DNA MER1_type 0 219 57 1129 249 6 21 chrY 21154844 21155170 -3557909 + L1P4 LINE L1 5388 5708 -460 * 15226 160 21 28 chrY 21155167 21157706 -3555373 - L1PA8 LINE L1 -344 6143 3383 1244 248 0 44 chrY 21157706 21158021 -3555058 - AluSx SINE Alu -1 301 1 15226 160 21 28 chrY 21158021 21159670 -3553409 - L1PA8 LINE L1 -3104 3383 1723 1087 122 16 43 chrY 21159670 21159858 -3553221 - LTR5 LTR ERVK 0 969 787 2948 168 8 2 chrY 21159888 21160395 -3552684 - LTR5 LTR ERVK -459 510 1 2450 200 36 2 chrY 21160404 21162036 -3551043 - L1PA8 LINE L1 -4734 1727 6 2435 117 63 36 chrY 21162409 21162855 -3550224 + LTR22B LTR ERVK 1 458 -34 368 227 65 40 chrY 21163020 21163173 -3549906 + L1MC3 LINE L1 5860 6018 -174 1829 165 0 3 chrY 21163300 21163603 -3549476 + AluY SINE Alu 1 302 -9 514 202 0 0 chrY 21163690 21163794 -3549285 - L1MB3 LINE L1 -12 6171 6068 620 204 61 50 chrY 21163794 21163975 -3549104 - L1MB3 LINE L1 -631 5553 5371 270 274 42 0 chrY 21163971 21164066 -3549013 + L1M4 LINE L1 5067 5165 -981 * 3373 112 198 72 chrY 21165437 21166171 -3546908 - LTR12 LTR ERV1 0 826 1 264 332 158 5 chrY 21166514 21166704 -3546375 - MIR SINE MIR 0 262 44 3957 132 0 0 chrY 21167536 21168121 -3544958 + LTR14C LTR ERVK 3 587 0 1891 153 3 0 chrY 21168460 21168748 -3544331 + AluY SINE Alu 1 289 -22 31139 137 20 12 chrY 21168790 21174908 -3538171 + L1PA6 LINE L1 11 6165 0 256 280 19 19 chrY 21174915 21175022 -3538057 - L1MA9 LINE L1 -38 6274 6168 839 260 34 0 chrY 21175022 21175226 -3537853 + MSTB1 LTR MaLR 1 211 -221 4181 249 130 16 chrY 21175240 21177437 -3535642 - L1MB1 LINE L1 -269 6102 3639 1329 255 133 24 chrY 21177469 21178457 -3534622 - L1MB1 LINE L1 -2953 3375 2270 3452 251 50 49 chrY 21178768 21179148 -3533931 - L1MB1 LINE L1 -4065 1263 885 1603 217 0 3 chrY 21179148 21179461 -3533618 - AluSx SINE Alu 0 312 1 3452 251 50 49 chrY 21179461 21180618 -3532461 - L1MB1 LINE L1 -4443 885 16 257 298 59 29 chrY 21180601 21180873 -3532206 - L1M4 LINE L1 -3011 3633 3354 * 312 263 75 0 chrY 21180934 21181014 -3532065 - L1M4 LINE L1 -3645 2999 2914 260 308 64 16 chrY 21181106 21181418 -3531661 - L1M4 LINE L1 -3953 2693 2367 850 255 127 4 chrY 21181528 21181795 -3531284 - AluJo SINE Alu -5 307 8 6950 59 20 0 chrY 21181906 21183152 -3529927 - L1PA4 LINE L1 -8 6147 4891 1895 75 6 3 chrY 21183177 21185824 -3527255 - L1PA4 LINE L1 -3359 2787 1 1227 270 96 31 chrY 21185834 21186949 -3526130 - L1M4 LINE L1 -4566 2080 858 213 146 24 0 chrY 21186980 21187021 -3526058 + A-rich Low_complexity Low_complexity 4 45 0 659 279 45 25 chrY 21187168 21187369 -3525710 + AluJo SINE Alu 5 209 -103 351 267 57 9 chrY 21187381 21187486 -3525593 + AluJb SINE Alu 173 282 -20 244 298 88 44 chrY 21187559 21187787 -3525292 - L1M4 LINE L1 -5974 568 331 1871 167 0 0 chrY 21188348 21188635 -3524444 - AluSx SINE Alu -23 289 3 6939 30 1 1 chrY 21188789 21189622 -3523457 - L1P LINE L1 -1634 4512 3680 7643 23 2 0 chrY 21189625 21191080 -3521999 + L1PA2 LINE L1 4697 6153 -2 48 67 0 0 chrY 21191539 21191629 -3521450 + AT_rich Low_complexity Low_complexity 1 90 0 588 241 36 0 chrY 21192468 21192605 -3520474 + FRAM SINE Alu 22 163 -13 209 160 0 40 chrY 21192610 21192660 -3520419 + GA-rich Low_complexity Low_complexity 5 52 0 188 357 14 14 chrY 21192741 21192881 -3520198 - L2 LINE L2 -1265 2049 1910 1468 174 106 0 chrY 21193073 21193355 -3519724 + AluSx SINE Alu 1 312 0 1051 164 64 95 chrY 21193827 21194000 -3519079 - L1MA7 LINE L1 0 6291 6132 1510 215 11 0 chrY 21194000 21194284 -3518795 - AluSq SINE Alu -23 290 4 1051 164 64 95 chrY 21194284 21194468 -3518611 - L1MA7 LINE L1 -159 6132 5944 509 267 82 0 chrY 21194474 21194609 -3518470 - FRAM SINE Alu -30 146 1 1578 219 11 19 chrY 21194610 21194985 -3518094 - L1MA7 LINE L1 -325 5966 5595 1009 184 10 54 chrY 21195009 21195303 -3517776 + L1M2 LINE L1 5097 5377 -769 593 255 33 0 chrY 21195334 21195487 -3517592 - AluSg/x SINE Alu -27 283 126 935 188 6 6 chrY 21195494 21195675 -3517404 + L1M2 LINE L1 5379 5559 -732 663 239 165 0 chrY 21198144 21198320 -3514759 + AluJb SINE Alu 1 205 -107 1171 246 90 4 chrY 21198489 21198766 -3514313 - AluSx SINE Alu -1 301 1 22 35 0 0 chrY 21198887 21198916 -3514163 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chrY 21200299 21200334 -3512745 + AT_rich Low_complexity Low_complexity 1 35 0 314 138 17 0 chrY 21200670 21200728 -3512351 + (TA)n Simple_repeat Simple_repeat 1 59 0 867 309 84 32 chrY 21202388 21202922 -3510157 + L1M1 LINE L1 1967 2553 -5012 1281 217 3 62 chrY 21202922 21203231 -3509848 + AluSq SINE Alu 1 291 -22 867 309 84 32 chrY 21203231 21203444 -3509635 + L1M1 LINE L1 2553 2753 -4812 1356 256 123 14 chrY 21203481 21204059 -3509020 + L1M1 LINE L1 3894 4534 -3031 4489 217 70 47 chrY 21204126 21205636 -3507443 + L1M1 LINE L1 4876 6420 -1145 515 264 35 21 chrY 21205636 21205780 -3507299 + FRAM SINE Alu 1 139 -37 641 239 73 30 chrY 21205817 21206186 -3506893 + L1M1 LINE L1 6420 6804 -761 299 135 0 14 chrY 21206180 21206254 -3506825 + (TG)n Simple_repeat Simple_repeat 2 74 0 * 1324 196 4 0 chrY 21206291 21206516 -3506563 - AluSx SINE Alu -86 226 1 25 95 0 0 chrY 21206516 21206590 -3506489 + AT_rich Low_complexity Low_complexity 1 74 0 1512 161 8 0 chrY 21206631 21206873 -3506206 + AluSg SINE Alu 40 283 -27 201 39 0 0 chrY 21208538 21208564 -3504515 + (TG)n Simple_repeat Simple_repeat 1 26 0 237 305 37 0 chrY 21209845 21209927 -3503152 + L2 LINE L2 1844 1928 -1386 1114 219 60 4 chrY 21209967 21210236 -3502843 - AluJo SINE Alu -18 284 1 675 329 92 19 chrY 21210265 21210468 -3502611 + L2 LINE L2 2140 2327 -987 6812 113 8 23 chrY 21210468 21211555 -3501524 - MER11C LTR ERVK 0 1071 1 675 329 92 19 chrY 21211555 21211828 -3501251 + L2 LINE L2 2327 2651 -663 408 40 0 0 chrY 21212004 21212054 -3501025 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 1104 192 21 79 chrY 21212078 21212369 -3500710 - AluSx SINE Alu -37 275 2 914 241 14 38 chrY 21212946 21213236 -3499843 - L1MB7 LINE L1 -11 6173 5891 311 261 123 22 chrY 21213236 21213374 -3499705 + LTR40b LTR ERVL 59 210 -252 711 280 160 7 chrY 21213597 21213897 -3499182 - L1MB7 LINE L1 -457 5721 5376 1023 163 12 0 chrY 21213925 21214097 -3498982 + AluSq SINE Alu 129 302 -11 3287 216 34 16 chrY 21214315 21215071 -3498008 + L1PA10 LINE L1 5388 6157 -11 1206 238 90 4 chrY 21215247 21215524 -3497555 - AluSx SINE Alu -1 301 1 21 82 0 0 chrY 21215645 21215694 -3497385 + AT_rich Low_complexity Low_complexity 1 49 0 24 0 0 0 chrY 21216365 21216389 -3496690 + AT_rich Low_complexity Low_complexity 1 24 0 212 224 20 0 chrY 21217437 21217486 -3495593 + (TA)n Simple_repeat Simple_repeat 2 51 0 270 0 0 0 chrY 21218017 21218047 -3495032 + (TTA)n Simple_repeat Simple_repeat 1 30 0 1010 266 35 37 chrY 21219495 21219928 -3493151 + L1MA4 LINE L1 5865 6296 -4 872 306 92 68 chrY 21220205 21221306 -3491773 + MER21-int LTR ERV1 2054 3180 -1011 30 0 0 0 chrY 21221311 21221341 -3491738 + AT_rich Low_complexity Low_complexity 1 30 0 1658 167 26 3 chrY 21221942 21222401 -3490678 + AluSq SINE Alu 1 466 0 2631 26 0 0 chrY 21222717 21223024 -3490055 + AluYa5 SINE Alu 1 307 -4 9314 57 15 0 chrY 21223104 21225081 -3487998 - L1PA4 LINE L1 -6 6149 4155 24 0 0 0 chrY 21225586 21225610 -3487469 + AT_rich Low_complexity Low_complexity 1 24 0 230 0 0 32 chrY 21225886 21225917 -3487162 + (TTTTC)n Simple_repeat Simple_repeat 1 30 0 782 190 44 6 chrY 21225917 21226075 -3487004 - U1 snRNA snRNA -1 164 1 232 301 65 65 chrY 21226547 21226700 -3486379 - MIR SINE MIR -17 191 39 550 255 0 45 chrY 21226797 21226954 -3486125 - FRAM SINE Alu -18 158 9 239 236 167 0 chrY 21227659 21227731 -3485348 + L2 LINE L2 3220 3303 -10 21 0 0 0 chrY 21228503 21228524 -3484555 + AT_rich Low_complexity Low_complexity 1 21 0 1176 183 5 0 chrY 21228525 21228722 -3484357 + AluSg/x SINE Alu 77 274 -35 183 42 0 0 chrY 21228724 21228748 -3484331 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 479 43 43 0 chrY 21229204 21229274 -3483805 - L1PA2 LINE L1 -1 6154 6082 318 293 64 71 chrY 21229683 21229980 -3483099 + MER46C DNA MER2_type 27 321 -17 29 60 0 0 chrY 21230112 21230162 -3482917 + AT_rich Low_complexity Low_complexity 1 50 0 22 56 0 0 chrY 21230438 21230474 -3482605 + AT_rich Low_complexity Low_complexity 1 36 0 236 333 9 37 chrY 21230785 21230893 -3482186 - MER5B DNA MER1_type -30 148 44 1413 165 120 0 chrY 21230913 21231180 -3481899 + AluSc SINE Alu 2 300 -9 198 143 0 0 chrY 21231316 21231351 -3481728 + (TA)n Simple_repeat Simple_repeat 1 35 0 22 0 0 0 chrY 21231410 21231432 -3481647 + AT_rich Low_complexity Low_complexity 1 22 0 647 200 0 0 chrY 21232231 21232346 -3480733 + LTR19B LTR ERV1 1 115 -465 * 1753 171 49 3 chrY 21232339 21232667 -3480412 + LTR19B LTR ERV1 238 580 0 1428 180 65 0 chrY 21232667 21232912 -3480167 + LTR19B-int LTR ERV1 1 261 -5325 808 101 14 0 chrY 21232917 21233055 -3480024 + (TC)n Simple_repeat Simple_repeat 2 141 0 1491 214 7 4 chrY 21233056 21233337 -3479742 + LTR19B-int LTR ERV1 330 611 -4975 552 166 103 7 chrY 21233472 21233617 -3479462 + LTR25-int LTR ERV1 4578 4736 -2260 7009 163 47 28 chrY 21233637 21235014 -3478065 + L1P3 LINE L1 377 1807 -4644 420 82 0 0 chrY 21235015 21235076 -3478003 + (TTTG)n Simple_repeat Simple_repeat 4 64 0 1630 181 0 0 chrY 21235076 21235336 -3477743 - AluSg SINE Alu -32 278 19 226 135 0 0 chrY 21236104 21236141 -3476938 + (T)n Simple_repeat Simple_repeat 1 37 0 266 0 29 0 chrY 21236143 21236177 -3476902 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 18511 21 0 0 chrY 21236177 21239140 -3473939 - L1HS LINE L1 0 6155 3193 302 182 0 18 chrY 21242683 21242738 -3470341 - Alu SINE Alu -248 54 1 6724 63 10 6 chrY 21242926 21245657 -3467422 + L1PA4 LINE L1 3278 6144 -11 195 69 0 0 chrY 21245664 21245693 -3467386 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 1330 195 66 0 chrY 21246110 21246366 -3466713 + AluSx SINE Alu 12 284 -28 22 0 0 0 chrY 21246834 21246856 -3466223 + AT_rich Low_complexity Low_complexity 1 22 0 284 111 19 0 chrY 21247772 21247826 -3465253 + (CA)n Simple_repeat Simple_repeat 2 56 0 1124 246 111 24 chrY 21248243 21248665 -3464414 + MLT1C LTR MaLR 2 460 -7 809 205 126 82 chrY 21250746 21251039 -3462040 + AluJb SINE Alu 4 309 -3 208 281 0 31 chrY 21251336 21251400 -3461679 + L2 LINE L2 3251 3312 -1 371 184 11 0 chrY 21253221 21253308 -3459771 + CT-rich Low_complexity Low_complexity 2 89 0 1163 102 6 0 chrY 21253309 21253486 -3459593 + (TTCC)n Simple_repeat Simple_repeat 3 180 0 203 244 0 0 chrY 21254262 21254303 -3458776 + (TG)n Simple_repeat Simple_repeat 2 42 0 1154 220 0 0 chrY 21254306 21254529 -3458550 - L1MC1 LINE L1 -7 6326 6104 1575 196 17 7 chrY 21254616 21254907 -3458172 - AluSx SINE Alu -18 294 1 866 286 25 7 chrY 21255009 21255292 -3457787 - AluSx SINE Alu -14 288 1 624 250 152 0 chrY 21257038 21257202 -3455877 + MER3 DNA MER1_type 17 205 -4 1333 236 0 31 chrY 21257294 21257618 -3455461 + AluSx SINE Alu 1 370 -49 294 214 0 0 chrY 21257618 21257674 -3455405 + A-rich Low_complexity Low_complexity 1 56 0 1333 236 0 31 chrY 21257674 21257723 -3455356 + AluSx SINE Alu 370 419 0 559 197 20 0 chrY 21257675 21257822 -3455257 + GA-rich Low_complexity Low_complexity 3 152 0 2592 153 18 40 chrY 21257868 21258364 -3454715 - LTR22B LTR ERVK -3 489 5 842 220 211 14 chrY 21258934 21259289 -3453790 + L1M4 LINE L1 4775 5199 -947 511 181 213 31 chrY 21259298 21259458 -3453621 + L1MC3 LINE L1 6093 6281 -1504 13694 44 0 1 chrY 21259621 21262062 -3451017 - L1PA3 LINE L1 -3 6152 3709 1851 59 0 0 chrY 21262062 21262299 -3450780 + L1PA3 LINE L1 3466 3702 -2444 244 272 134 45 chrY 21262491 21262693 -3450386 - L1MC1 LINE L1 -2037 5771 5552 665 201 0 22 chrY 21263154 21263288 -3449791 + FLAM_C SINE Alu 3 133 0 249 211 96 64 chrY 21263333 21263489 -3449590 - L1MC4 LINE L1 -17 8025 7865 500 321 85 59 chrY 21265585 21265890 -3447189 + L2 LINE L2 2941 3253 -19 1130 254 42 7 chrY 21266102 21266390 -3446689 + AluJb SINE Alu 1 298 -4 1602 203 7 0 chrY 21266536 21266827 -3446252 - AluSq SINE Alu -20 293 1 1324 180 71 4 chrY 21266956 21267211 -3445868 - AluSg1 SINE Alu -8 301 30 280 331 130 27 chrY 21267722 21267906 -3445173 - L3 LINE CR1 -1180 397 195 603 256 0 0 chrY 21268521 21268642 -3444437 - FLAM_A SINE Alu -12 121 1 1950 158 3 0 chrY 21268762 21269059 -3444020 - AluSq SINE Alu -15 298 1 26 50 0 0 chrY 21271559 21271599 -3441480 + AT_rich Low_complexity Low_complexity 1 40 0 22 0 0 0 chrY 21271623 21271645 -3441434 + AT_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chrY 21271846 21271874 -3441205 + AT_rich Low_complexity Low_complexity 1 28 0 287 286 135 15 chrY 21272832 21272965 -3440114 + MIR SINE MIR 54 202 -60 1282 234 0 20 chrY 21273288 21273462 -3439617 - AluSx SINE Alu -15 297 130 1447 204 10 16 chrY 21273462 21273776 -3439303 - AluSx SINE Alu 0 312 1 1282 234 0 20 chrY 21273776 21273904 -3439175 - AluSx SINE Alu -182 130 1 947 185 0 97 chrY 21274391 21274629 -3438450 - AluSc SINE Alu -94 215 1 267 288 12 25 chrY 21274738 21274818 -3438261 + LTR33 LTR ERVL 75 153 -368 626 254 97 24 chrY 21275247 21275769 -3437310 - L1MC1 LINE L1 -748 5398 5017 1201 184 0 0 chrY 21275818 21276019 -3437060 + L1PA7 LINE L1 5 205 -6256 4467 183 46 7 chrY 21276027 21276167 -3436912 + L1PA7 LINE L1 270 403 -6058 207 0 0 0 chrY 21276167 21276190 -3436889 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4467 183 46 7 chrY 21276190 21276871 -3436208 + L1PA7 LINE L1 403 1123 -5338 * 16489 142 14 4 chrY 21276860 21280337 -3432742 + L1PA7 LINE L1 2883 6395 -74 555 51 64 0 chrY 21280341 21280419 -3432660 - L1P LINE L1 -729 5425 5343 * 4474 159 16 11 chrY 21280418 21281240 -3431839 + L1PA14 LINE L1 5336 6161 0 250 281 126 7 chrY 21281474 21281609 -3431470 + TAR1 Satellite telomeric 1761 1911 -200 236 319 34 17 chrY 21282653 21282772 -3430307 + L2 LINE L2 2687 2807 -507 1429 293 114 11 chrY 21283799 21284668 -3428411 - L1 LINE L1 -753 5393 4436 643 274 6 6 chrY 21284706 21284870 -3428209 - FRAM SINE Alu -12 164 1 180 0 0 0 chrY 21284875 21284895 -3428184 + (TTG)n Simple_repeat Simple_repeat 2 21 0 673 218 96 96 chrY 21285201 21285673 -3427406 - AluJb SINE Alu 0 312 19 22 0 0 0 chrY 21286155 21286177 -3426902 + AT_rich Low_complexity Low_complexity 1 22 0 349 277 114 37 chrY 21286722 21286804 -3426275 - L1 LINE L1 -1738 4408 4334 1308 172 15 105 chrY 21286804 21287136 -3425943 + AluY SINE Alu 1 302 -9 349 277 114 37 chrY 21287136 21287510 -3425569 - L1 LINE L1 -1812 4334 3914 395 164 8 25 chrY 21287967 21288089 -3424990 + (TTAGGG)n Simple_repeat Simple_repeat 6 125 0 410 209 0 62 chrY 21288106 21288283 -3424796 + (TTAGGG)n Simple_repeat Simple_repeat 4 169 0 300 188 0 27 chrY 21288385 21288497 -3424582 + (TTAGGG)n Simple_repeat Simple_repeat 1 109 0 212 247 25 12 chrY 21288510 21288591 -3424488 + (TTAGGG)n Simple_repeat Simple_repeat 4 85 0 416 226 11 63 chrY 21288602 21288792 -3424287 + (TTAGGG)n Simple_repeat Simple_repeat 1 180 0 244 222 0 16 chrY 21288840 21288966 -3424113 + (TTAGGG)n Simple_repeat Simple_repeat 4 127 0 204 224 0 21 chrY 21289094 21289237 -3423842 + (TTAGGG)n Simple_repeat Simple_repeat 5 144 0 226 223 0 33 chrY 21289290 21289474 -3423605 + (TTAGGG)n Simple_repeat Simple_repeat 2 179 0 381 240 0 49 chrY 21289487 21289670 -3423409 + (TTAGGG)n Simple_repeat Simple_repeat 2 175 0 236 280 0 53 chrY 21289704 21289893 -3423186 + (TTAGGG)n Simple_repeat Simple_repeat 2 180 0 181 177 0 32 chrY 21289989 21290051 -3423028 + (TTAGGG)n Simple_repeat Simple_repeat 5 64 0 361 302 6 22 chrY 21290093 21290275 -3422804 + (TTAGGG)n Simple_repeat Simple_repeat 2 180 0 286 200 0 20 chrY 21290307 21290407 -3422672 + (TTAGGG)n Simple_repeat Simple_repeat 5 102 0 226 290 0 51 chrY 21290442 21290618 -3422461 + (TTAGGG)n Simple_repeat Simple_repeat 1 167 0 406 282 10 30 chrY 21290651 21290955 -3422124 + (TTAGGG)n Simple_repeat Simple_repeat 1 297 0 1942 240 44 15 chrY 21291238 21291834 -3421245 + L1MB5 LINE L1 5542 6154 -20 1036 201 32 9 chrY 21292019 21292238 -3420841 - MER50 LTR ERV1 0 734 511 525 251 12 12 chrY 21292246 21292409 -3420670 - L1M4 LINE L1 -901 5245 5083 559 246 60 27 chrY 21292421 21292604 -3420475 + L1M4 LINE L1 5371 5559 -625 336 186 34 93 chrY 21292587 21292705 -3420374 + L1MB3 LINE L1 6061 6171 -12 * 1397 273 58 37 chrY 21292883 21293548 -3419531 - L1MC3 LINE L1 -308 6051 5372 1441 194 19 13 chrY 21294336 21294645 -3418434 - AluSx SINE Alu -1 311 1 841 193 5 66 chrY 21295181 21295394 -3417685 - AluSg/x SINE Alu 0 310 111 2490 152 5 16 chrY 21295397 21295831 -3417248 - LTR3 LTR ERVK 0 429 1 17139 217 52 37 chrY 21295831 21296095 -3416984 - HERVK3 LTR ERVK -1 7242 6984 297 45 0 0 chrY 21296095 21296139 -3416940 + L1PA2 LINE L1 6112 6155 0 17139 217 52 37 chrY 21296139 21300094 -3412985 - HERVK3 LTR ERVK -259 6984 2913 234 222 62 49 chrY 21300185 21300266 -3412813 - L1MC4 LINE L1 -1342 6700 6619 303 294 16 16 chrY 21300267 21300393 -3412686 + (TA)n Simple_repeat Simple_repeat 2 127 0 236 214 0 102 chrY 21300394 21300492 -3412587 - L1MC4 LINE L1 -1340 6702 6615 244 185 37 0 chrY 21300609 21300663 -3412416 - L1MC4 LINE L1 -1340 6702 6647 219 318 0 0 chrY 21300663 21300726 -3412353 + (CATATA)n Simple_repeat Simple_repeat 4 66 0 226 153 34 34 chrY 21300726 21300785 -3412294 + L1MCa LINE L1 2006 2064 -4362 * 238 187 110 55 chrY 21300772 21300863 -3412216 + L1MC4 LINE L1 6614 6709 -1333 282 160 0 0 chrY 21300865 21300915 -3412164 + (TA)n Simple_repeat Simple_repeat 1 50 0 2291 269 35 39 chrY 21300928 21302287 -3410792 - HUERS-P3 LTR ERV1 -5580 1416 24 1309 328 30 24 chrY 21302331 21302966 -3410113 - HUERS-P3 LTR ERV1 -6586 2333 1695 228 263 0 13 chrY 21303049 21303125 -3409954 + LTR25 LTR ERV1 212 286 -508 515 295 74 23 chrY 21303484 21303579 -3409500 - LTR25 LTR ERV1 -320 474 385 1488 23 0 0 chrY 21303579 21303755 -3409324 + (GAA)n Simple_repeat Simple_repeat 2 177 0 515 295 74 23 chrY 21303755 21303876 -3409203 - LTR25 LTR ERV1 -409 385 247 267 231 0 0 chrY 21303913 21303978 -3409101 - LTR25 LTR ERV1 -510 284 220 3486 320 37 19 chrY 21304069 21305404 -3407675 + HUERS-P3 LTR ERV1 1695 3053 -5866 1229 276 92 12 chrY 21305422 21305925 -3407154 - LTR25 LTR ERV1 -2 792 250 323 236 0 0 chrY 21305952 21306024 -3407055 - LTR25 LTR ERV1 -501 293 222 704 303 36 18 chrY 21306145 21306407 -3406672 - HUERS-P1 LTR ERV1 -23 8896 4918 1787 266 29 19 chrY 21306410 21306989 -3406090 - HUERS-P1 LTR ERV1 -1224 3993 3409 3667 195 25 45 chrY 21306994 21307996 -3405083 + MER11C LTR ERVK 1 1071 0 365 213 38 0 chrY 21307996 21308076 -3405003 - HUERS-P1 LTR ERV1 -683 5580 5498 2959 288 12 22 chrY 21308081 21309016 -3404063 - HUERS-P1 LTR ERV1 -5305 3614 2690 2452 233 30 91 chrY 21309017 21309863 -3403216 + LTR25 LTR ERV1 1 794 0 5009 284 53 43 chrY 21310013 21312905 -3400174 + LTR25-int LTR ERV1 279 3125 -4286 360 0 0 0 chrY 21312905 21312945 -3400134 + (CAA)n Simple_repeat Simple_repeat 2 41 0 5009 284 53 43 chrY 21312945 21313012 -3400067 + LTR25-int LTR ERV1 3125 3190 -4221 2404 234 16 110 chrY 21313012 21313888 -3399191 + LTR25 LTR ERV1 1 794 0 3819 252 36 25 chrY 21313976 21315116 -3397963 + HUERS-P3b LTR ERV1 2907 4066 -2930 1598 188 35 3 chrY 21315116 21315403 -3397676 - AluSc SINE Alu -12 297 2 3819 252 36 25 chrY 21315403 21315673 -3397406 + HUERS-P3b LTR ERV1 4066 4332 -2664 5193 259 37 39 chrY 21315696 21318366 -3394713 + HUERS-P3b LTR ERV1 1750 6996 0 2045 238 66 79 chrY 21318368 21318668 -3394411 + LTR25 LTR ERV1 3 305 -489 216 0 0 0 chrY 21318668 21318692 -3394387 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2045 238 66 79 chrY 21318692 21319193 -3393886 + LTR25 LTR ERV1 305 794 0 5455 280 44 49 chrY 21319213 21321926 -3391153 - LTR25-int LTR ERV1 -4226 2770 90 1449 186 21 24 chrY 21322029 21322320 -3390759 - AluY SINE Alu -21 290 1 732 253 100 93 chrY 21322388 21322926 -3390153 - LTR25 LTR ERV1 0 794 253 228 139 0 0 chrY 21322934 21322970 -3390109 - MER61E LTR ERV1 -414 155 120 1605 270 22 54 chrY 21323133 21323859 -3389220 + LTR25-int LTR ERV1 1846 2548 -4448 1355 350 6 0 chrY 21323870 21324345 -3388734 + MER52A LTR ERV1 1278 1755 0 537 275 8 0 chrY 21324354 21324485 -3388594 + MER21B LTR ERV1 247 378 -485 1174 220 68 68 chrY 21327344 21327600 -3385479 - L1M4c LINE L1 -4188 2196 1941 2015 129 0 0 chrY 21327600 21327914 -3385165 - AluY SINE Alu 0 314 1 1174 220 68 68 chrY 21327914 21328544 -3384535 - L1M4c LINE L1 -4443 1941 1214 1202 255 45 0 chrY 21328710 21329067 -3384012 - LTR25 LTR ERV1 0 794 422 325 153 34 0 chrY 21329063 21329122 -3383957 - LTR25 LTR ERV1 -253 541 481 * 1835 149 3 27 chrY 21330399 21330725 -3382354 - AluY SINE Alu 0 319 1 1359 244 142 119 chrY 21331153 21332770 -3380309 - L1M4c LINE L1 -4204 2180 502 318 50 0 0 chrY 21332770 21332810 -3380269 + (TG)n Simple_repeat Simple_repeat 1 40 0 1359 244 142 119 chrY 21332810 21333302 -3379777 - L1M4c LINE L1 -5882 502 23 373 308 148 12 chrY 21333806 21334536 -3378543 - L1M4c LINE L1 -4656 1990 1162 311 355 129 44 chrY 21334802 21335165 -3377914 - L1M4c LINE L1 -5755 787 394 326 284 55 47 chrY 21335904 21336031 -3377048 - L2 LINE L2 -421 2893 2766 251 246 0 0 chrY 21336077 21336134 -3376945 + MER20 DNA MER1_type 90 146 -73 192 152 0 0 chrY 21337471 21337504 -3375575 + (TTA)n Simple_repeat Simple_repeat 1 33 0 225 0 0 0 chrY 21337779 21337804 -3375275 + (T)n Simple_repeat Simple_repeat 1 25 0 33874 88 5 6 chrY 21337988 21342954 -3370125 + L1P LINE L1 44 5005 -1141 * 38980 67 2 11 chrY 21342953 21349159 -3363920 + L1PA4 LINE L1 3 6152 -3 238 250 0 0 chrY 21349213 21349261 -3363818 + (TG)n Simple_repeat Simple_repeat 1 48 0 1366 199 85 16 chrY 21349261 21349638 -3363441 - MLT2A1 LTR ERVL -41 403 1 10368 156 8 22 chrY 21349638 21351509 -3361570 - HERVL-A1 LTR ERVL 0 5654 3810 2117 170 21 3 chrY 21351503 21351892 -3361187 - HERVL-A1 LTR ERVL -2058 3596 3201 * 852 182 0 0 chrY 21351880 21352034 -3361045 - HERVL LTR ERVL -998 4656 4503 * 8798 197 28 5 chrY 21352032 21353814 -3359265 - HERVL LTR ERVL -2454 3200 1378 755 196 7 7 chrY 21353815 21353968 -3359111 - MLT2A1 LTR ERVL -291 153 1 * 3064 271 75 34 chrY 21353968 21355266 -3357813 + MER52A LTR ERV1 645 1755 0 308 250 10 21 chrY 21355561 21355657 -3357422 - MER20 DNA MER1_type -24 195 101 1068 227 7 20 chrY 21355761 21356061 -3357018 + L1PA10 LINE L1 5483 5778 -390 686 207 0 0 chrY 21356077 21356212 -3356867 + L1PA10 LINE L1 6022 6156 -12 185 0 0 39 chrY 21356213 21356239 -3356840 + (TTAAA)n Simple_repeat Simple_repeat 1 25 0 1051 247 98 11 chrY 21356388 21356663 -3356416 - AluSx SINE Alu -2 300 2 27 0 0 0 chrY 21357960 21357987 -3355092 + AT_rich Low_complexity Low_complexity 1 27 0 2910 205 2 4 chrY 21359119 21359676 -3353403 + THE1B-int LTR MaLR 1025 1580 0 1024 228 120 30 chrY 21359676 21360010 -3353069 + THE1B LTR MaLR 1 364 0 773 270 13 80 chrY 21360245 21360556 -3352523 - AluJo SINE Alu -17 295 6 1211 195 0 13 chrY 21361845 21362081 -3350998 - AluSq SINE Alu 0 313 81 1973 118 3 30 chrY 21362111 21362416 -3350663 + AluY SINE Alu 1 297 -14 26 30 0 0 chrY 21363268 21363301 -3349778 + AT_rich Low_complexity Low_complexity 1 33 0 186 71 0 0 chrY 21363309 21363337 -3349742 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 243 111 0 0 chrY 21363354 21363390 -3349689 + Charlie3 DNA MER1_type 2659 2694 -16 616 297 6 28 chrY 21363981 21364163 -3348916 - AluJb SINE Alu -133 179 2 356 216 22 7 chrY 21364176 21364315 -3348764 + (TA)n Simple_repeat Simple_repeat 2 142 0 560 189 0 0 chrY 21364548 21364643 -3348436 - AluJb SINE Alu -131 181 87 24 32 0 0 chrY 21364828 21364859 -3348220 + AT_rich Low_complexity Low_complexity 1 31 0 27 29 0 0 chrY 21366767 21366801 -3346278 + AT_rich Low_complexity Low_complexity 1 34 0 26 30 0 0 chrY 21367032 21367065 -3346014 + AT_rich Low_complexity Low_complexity 1 33 0 316 327 117 19 chrY 21367857 21368062 -3345017 + L1MC4a LINE L1 5724 5948 -1860 30 0 0 0 chrY 21368255 21368285 -3344794 + AT_rich Low_complexity Low_complexity 1 30 0 2192 89 3 3 chrY 21368560 21368863 -3344216 - AluY SINE Alu -8 303 1 1062 256 98 4 chrY 21370112 21370378 -3342701 + AluSx SINE Alu 11 301 -11 1651 135 24 64 chrY 21370668 21370993 -3342086 - AluSq SINE Alu 0 313 1 331 266 108 29 chrY 21371063 21371202 -3341877 + MER20 DNA MER1_type 25 174 -45 2324 282 10 2 chrY 21371543 21372138 -3340941 - MER52A LTR ERV1 0 1755 1156 20045 164 16 3 chrY 21372138 21376503 -3336576 + HERVL-A1 LTR ERVL 714 5225 -429 366 114 0 0 chrY 21376506 21376576 -3336503 + (CAGC)n Simple_repeat Simple_repeat 2 71 0 785 179 0 6 chrY 21376591 21376759 -3336320 + GA-rich Low_complexity Low_complexity 2 168 0 2013 166 29 2 chrY 21376776 21377185 -3335894 + HERVL-A1 LTR ERVL 5235 5654 0 749 203 62 5 chrY 21377185 21377377 -3335702 + MLT2A1 LTR ERVL 1 203 -241 368 353 59 5 chrY 21378427 21378614 -3334465 + L2 LINE L2 2766 2962 -352 472 299 113 72 chrY 21379671 21380156 -3332923 + L1M4c LINE L1 1990 2494 -3890 1196 291 95 46 chrY 21380213 21380971 -3332108 + L1M4c LINE L1 49 864 -5520 2396 53 23 3 chrY 21380971 21381274 -3331805 + AluY SINE Alu 1 309 -2 1196 291 95 46 chrY 21381274 21381465 -3331614 + L1M4c LINE L1 864 1044 -5340 279 0 0 0 chrY 21381526 21381557 -3331522 + (TC)n Simple_repeat Simple_repeat 2 32 0 371 153 53 0 chrY 21381628 21381759 -3331320 + (TA)n Simple_repeat Simple_repeat 1 138 0 297 241 139 75 chrY 21381759 21381802 -3331277 + L1M4c LINE L1 1051 1090 -5294 1788 175 10 3 chrY 21381802 21382094 -3330985 + AluSc SINE Alu 1 294 -15 297 241 139 75 chrY 21382094 21382191 -3330888 + L1M4c LINE L1 1090 1208 -5176 240 35 0 0 chrY 21382191 21382220 -3330859 + (TAAA)n Simple_repeat Simple_repeat 3 31 0 297 241 139 75 chrY 21382220 21382265 -3330814 + L1M4c LINE L1 1208 1249 -5135 1282 274 117 6 chrY 21382278 21383082 -3329997 + L1M4c LINE L1 1312 2202 -4182 1865 182 0 0 chrY 21383606 21383902 -3329177 + AluSg SINE Alu 1 296 -14 1704 185 3 7 chrY 21385606 21385903 -3327176 - AluY SINE Alu -13 298 3 27 0 0 0 chrY 21385994 21386021 -3327058 + AT_rich Low_complexity Low_complexity 1 27 0 537 264 0 0 chrY 21386488 21386617 -3326462 - MER21B LTR ERV1 -487 376 248 2330 318 18 29 chrY 21386627 21387512 -3325567 - MER52A LTR ERV1 0 1755 923 742 169 0 0 chrY 21387567 21387685 -3325394 + AluSc SINE Alu 167 284 -25 3667 214 6 12 chrY 21387702 21388677 -3324402 + L1P LINE L1 1267 2296 -3850 * 36868 76 18 3 chrY 21388676 21389491 -3323588 - L1PA4 LINE L1 0 6155 5354 2780 22 0 0 chrY 21389491 21389802 -3323277 + AluYa5 SINE Alu 1 311 0 36868 76 18 3 chrY 21389802 21395041 -3318038 - L1PA4 LINE L1 -801 5354 1 1336 285 18 37 chrY 21395045 21395613 -3317466 + LTR25-int LTR ERV1 865 1421 -5575 23 0 0 29 chrY 21395616 21395635 -3317444 + AT_rich Low_complexity Low_complexity 1 20 -13 333 0 0 0 chrY 21395635 21395672 -3317407 + (TG)n Simple_repeat Simple_repeat 2 38 0 23 0 0 29 chrY 21395672 21395686 -3317393 + AT_rich Low_complexity Low_complexity 20 33 0 323 270 34 0 chrY 21395702 21395791 -3317288 + L1MC4 LINE L1 6614 6705 -1337 314 234 11 64 chrY 21395712 21395806 -3317273 - L1MC4 LINE L1 -1339 6703 6615 * 269 296 8 0 chrY 21395830 21395962 -3317117 + (TA)n Simple_repeat Simple_repeat 2 134 0 200 240 40 0 chrY 21396017 21396067 -3317012 + (CATA)n Simple_repeat Simple_repeat 3 54 0 230 178 0 0 chrY 21396068 21396113 -3316966 + L1MC4 LINE L1 6658 6702 -1340 210 71 0 0 chrY 21396116 21396144 -3316935 + (CATATA)n Simple_repeat Simple_repeat 2 29 0 15719 215 67 29 chrY 21396214 21400384 -3312695 + HERVK3 LTR ERVK 2913 7241 -2 1904 155 58 48 chrY 21400386 21400819 -3312260 + LTR3b LTR ERVK 1 437 0 854 225 0 0 chrY 21400869 21401060 -3312019 + AluSg/x SINE Alu 119 309 -1 306 202 298 0 chrY 21401166 21401260 -3311819 + L1MC3 LINE L1 5254 5375 -2410 1365 204 7 26 chrY 21401627 21401931 -3311148 + AluSx SINE Alu 1 298 -14 248 51 0 26 chrY 21402642 21402681 -3310398 + (TTTTA)n Simple_repeat Simple_repeat 1 38 0 6798 39 8 4 chrY 21402683 21404251 -3308828 - L1PA3 LINE L1 -27 6128 4551 1246 249 67 48 chrY 21404372 21404939 -3308140 + L1MC3 LINE L1 5386 5963 -1822 289 206 93 10 chrY 21405202 21405299 -3307780 - L1MB3 LINE L1 -11 6172 6068 * 588 167 130 57 chrY 21405293 21405365 -3307714 - L1MB3 LINE L1 -615 5559 5494 216 0 0 0 chrY 21405365 21405389 -3307690 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 588 167 130 57 chrY 21405389 21405508 -3307571 - L1MB3 LINE L1 -680 5494 5354 510 249 12 12 chrY 21405487 21405660 -3307419 + L1M4 LINE L1 5073 5245 -901 * 1033 190 23 9 chrY 21405668 21405889 -3307190 + MER50 LTR ERV1 511 734 0 2020 224 84 20 chrY 21406060 21406765 -3306314 - L1MB5 LINE L1 -10 6164 5415 6815 40 0 1 chrY 21407837 21409044 -3304035 + L1PA3 LINE L1 4923 6128 -27 248 51 0 26 chrY 21409046 21409085 -3303994 + (TAAAA)n Simple_repeat Simple_repeat 1 38 0 1337 204 7 26 chrY 21409798 21410102 -3302977 - AluSx SINE Alu -14 298 1 269 260 214 7 chrY 21410473 21410627 -3302452 - L1MB5 LINE L1 -775 5371 5186 834 225 0 0 chrY 21410669 21410860 -3302219 - AluSg/x SINE Alu -1 309 119 2099 155 58 48 chrY 21410910 21411343 -3301736 - LTR3b LTR ERVK 0 437 1 17629 212 67 29 chrY 21411345 21415517 -3297562 - HERVK3 LTR ERVK -2 7241 2911 248 264 11 22 chrY 21415605 21415696 -3297383 + L1MC4 LINE L1 6614 6703 -1339 * 274 222 19 56 chrY 21415616 21415724 -3297355 - L1MC4 LINE L1 -1340 6702 6599 232 220 0 0 chrY 21415773 21415823 -3297256 - L1MC4 LINE L1 -1340 6702 6653 192 179 0 0 chrY 21415831 21415870 -3297209 + (CATA)n Simple_repeat Simple_repeat 2 40 0 259 250 11 43 chrY 21415923 21416015 -3297064 + L1MC4 LINE L1 6615 6703 -1339 253 297 11 0 chrY 21415938 21416029 -3297050 - L1MC4 LINE L1 -1337 6705 6614 * 369 0 0 0 chrY 21416059 21416100 -3296979 + (CA)n Simple_repeat Simple_repeat 2 42 0 1536 278 21 43 chrY 21416114 21416690 -3296389 - LTR25-int LTR ERV1 -5571 1425 863 7796 109 2 0 chrY 21416692 21417767 -3295312 + L1P LINE L1 1 1077 -5069 1970 116 4 0 chrY 21417768 21418036 -3295043 + AluSx SINE Alu 33 301 -11 982 241 129 59 chrY 21418449 21418790 -3294289 - MLT1A1 LTR MaLR 0 365 1 1487 139 112 0 chrY 21419094 21419245 -3293834 - AluJo SINE Alu -15 297 164 364 19 38 0 chrY 21419245 21419298 -3293781 + (TTTTA)n Simple_repeat Simple_repeat 1 55 0 1487 139 112 0 chrY 21419298 21419413 -3293666 - AluJo SINE Alu -148 164 1 743 171 34 0 chrY 21420429 21420546 -3292533 - FRAM SINE Alu -25 151 31 341 327 77 19 chrY 21420841 21421049 -3292030 - L1ME LINE L1 -344 5777 5558 1967 158 0 7 chrY 21421079 21421383 -3291696 + AluSx SINE Alu 1 302 -10 1553 208 0 10 chrY 21421933 21422222 -3290857 - AluJo SINE Alu -26 286 1 222 294 71 32 chrY 21422568 21422694 -3290385 + MIR SINE MIR 107 237 -25 238 314 94 38 chrY 21423077 21423236 -3289843 - MIR SINE MIR -27 235 68 1796 161 0 11 chrY 21423755 21424070 -3289009 - AluSx SINE Alu 0 312 1 866 183 0 65 chrY 21424689 21424858 -3288221 + AluJb SINE Alu 146 303 -9 21 36 0 0 chrY 21425272 21425300 -3287779 + AT_rich Low_complexity Low_complexity 1 28 0 873 250 136 6 chrY 21425440 21425811 -3287268 + L1MC4 LINE L1 5521 5797 -373 606 235 0 0 chrY 21425824 21425943 -3287136 + MER106A DNA MER1_type 1 119 -117 332 303 46 51 chrY 21426046 21426221 -3286858 + L1ME3A LINE L1 5987 6160 -10 2125 141 0 0 chrY 21426756 21427062 -3286017 + AluSq SINE Alu 1 306 -7 582 299 61 58 chrY 21427668 21428013 -3285066 + L3 LINE CR1 1055 1400 -177 190 303 138 28 chrY 21428022 21428131 -3284948 + L3b LINE CR1 1452 1572 -11 259 311 197 16 chrY 21428305 21428488 -3284591 - L1M2 LINE L1 -4309 2232 1809 346 276 135 39 chrY 21428525 21429097 -3283982 - L1MDb LINE L1 -4910 1209 569 243 186 71 43 chrY 21429365 21429435 -3283644 - L1MDb LINE L1 -6031 88 17 21 36 0 0 chrY 21429806 21429834 -3283245 + AT_rich Low_complexity Low_complexity 1 28 0 802 161 0 0 chrY 21429834 21429958 -3283121 - FLAM_C SINE Alu -17 126 3 646 189 196 0 chrY 21429979 21430122 -3282957 - MER5A DNA MER1_type -18 171 1 360 218 0 0 chrY 21430164 21430251 -3282828 + (CATA)n Simple_repeat Simple_repeat 3 89 0 1486 211 3 3 chrY 21431063 21431352 -3281727 - AluJb SINE Alu -23 289 1 21 0 0 0 chrY 21431364 21431385 -3281694 + AT_rich Low_complexity Low_complexity 1 21 0 1920 155 3 7 chrY 21432769 21433072 -3280007 + AluSx SINE Alu 1 302 -10 1610 164 17 21 chrY 21433908 21434195 -3278884 - L1MB7 LINE L1 -18 6166 5881 2234 73 0 7 chrY 21436470 21436756 -3276323 + AluY SINE Alu 28 311 0 21 36 0 0 chrY 21437515 21437543 -3275536 + AT_rich Low_complexity Low_complexity 1 28 0 479 196 135 74 chrY 21437577 21437741 -3275338 - MIR SINE MIR -64 198 30 216 0 0 0 chrY 21437877 21437901 -3275178 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 500 276 76 101 chrY 21438320 21438715 -3274364 + L1MEd LINE L1 561 937 -5182 1311 163 39 102 chrY 21438715 21439047 -3274032 + AluJb SINE Alu 1 311 -1 500 276 76 101 chrY 21439047 21439257 -3273822 + L1MEd LINE L1 937 1151 -4968 511 298 120 43 chrY 21439313 21440079 -3273000 + L1MEd LINE L1 2112 2936 -3193 216 135 0 0 chrY 21440086 21440123 -3272956 + (TC)n Simple_repeat Simple_repeat 2 38 0 250 286 124 19 chrY 21440285 21440390 -3272689 - L2 LINE L2 -18 3295 3180 227 255 0 0 chrY 21440390 21440441 -3272638 - L2 LINE L2 -1027 2287 2237 268 259 47 0 chrY 21440647 21440732 -3272347 + MIR SINE MIR 60 148 -114 374 310 93 39 chrY 21440930 21441059 -3272020 + L2 LINE L2 3122 3257 -15 2077 148 0 0 chrY 21441140 21441438 -3271641 - AluSx SINE Alu -14 298 1 193 321 28 46 chrY 21441438 21441540 -3271539 - L2 LINE L2 -245 3027 2926 558 177 21 85 chrY 21442041 21442182 -3270897 + FLAM_C SINE Alu 2 133 0 966 235 70 35 chrY 21442681 21443022 -3270057 + L1MC4a LINE L1 5691 6043 -1765 261 221 47 23 chrY 21443667 21443753 -3269326 - L1MB7 LINE L1 -236 5885 5798 2868 10 0 0 chrY 21443791 21444100 -3268979 - AluYa5 SINE Alu -2 309 1 372 261 152 31 chrY 21444102 21444563 -3268516 - L1MB7 LINE L1 -464 5657 5189 576 169 17 28 chrY 21444589 21444766 -3268313 + CT-rich Low_complexity Low_complexity 3 177 0 321 150 0 38 chrY 21444772 21444852 -3268227 + (TTTC)n Simple_repeat Simple_repeat 1 77 0 1539 194 4 4 chrY 21444966 21445239 -3267840 - AluJo SINE Alu -38 274 2 911 188 7 0 chrY 21445984 21446138 -3266941 - MER5A DNA MER1_type -33 156 2 2159 110 0 0 chrY 21446474 21446786 -3266293 - AluSx SINE Alu 0 312 1 207 280 40 40 chrY 21448962 21449037 -3264042 + MIR3 SINE MIR 1 75 -133 241 282 13 13 chrY 21449486 21449564 -3263515 + MIR SINE MIR 73 150 -58 236 328 142 0 chrY 21450563 21450697 -3262382 + MIR3 SINE MIR 31 183 -25 234 244 49 37 chrY 21450697 21450779 -3262300 + LTR48 LTR ERV1 59 141 -646 236 211 39 0 chrY 21451151 21451203 -3261876 + MIR SINE MIR 96 149 -59 1907 111 0 32 chrY 21452590 21452870 -3260209 + AluSx SINE Alu 5 275 -37 249 33 0 0 chrY 21452874 21452904 -3260175 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 285 347 145 5 chrY 21452905 21453098 -3259981 + MIR SINE MIR 37 256 -6 22 35 0 0 chrY 21456261 21456290 -3256789 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chrY 21456844 21456866 -3256213 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chrY 21457429 21457449 -3255630 + (T)n Simple_repeat Simple_repeat 1 20 0 261 83 0 0 chrY 21458357 21458393 -3254686 + (TG)n Simple_repeat Simple_repeat 1 36 0 251 340 48 15 chrY 21460942 21461125 -3251954 - MIR3 SINE MIR -57 151 5 227 232 29 29 chrY 21462970 21463039 -3250040 - MIR SINE MIR -55 153 85 1508 114 37 33 chrY 21463121 21463366 -3249713 - AluJb SINE Alu -32 280 35 260 330 9 27 chrY 21463415 21463527 -3249552 + MIR SINE MIR 31 140 -122 269 309 56 16 chrY 21465030 21465156 -3247923 + L2 LINE L2 2919 3049 -223 268 222 111 0 chrY 21465478 21465559 -3247520 + MER5A DNA MER1_type 47 136 -53 229 321 64 0 chrY 21469529 21469638 -3243441 - L2 LINE L2 -1 3271 3156 745 184 0 29 chrY 21470255 21470391 -3242688 - FLAM_C SINE Alu 0 133 2 209 294 59 0 chrY 21470903 21470971 -3242108 - MIR SINE MIR -63 145 74 292 222 16 0 chrY 21472939 21473002 -3240077 - MER63 DNA MER1_type -9 1052 989 418 264 27 0 chrY 21473005 21473115 -3239964 - MER63 DNA MER1_type -95 741 3 2656 94 15 82 chrY 21473154 21473630 -3239449 - MLT2A1 LTR ERVL 0 444 1 210 287 0 0 chrY 21474792 21474879 -3238200 + (TG)n Simple_repeat Simple_repeat 2 88 0 2149 125 0 0 chrY 21474888 21475177 -3237902 - AluSg SINE Alu -21 289 1 485 221 141 61 chrY 21475180 21475393 -3237686 + L1ME4a LINE L1 5891 6120 -1 1257 244 136 25 chrY 21476216 21476744 -3236335 + MLT1E LTR MaLR 3 589 -4 2162 112 6 16 chrY 21477119 21477431 -3235648 + AluSc SINE Alu 1 309 0 2451 97 3 3 chrY 21477582 21477893 -3235186 - AluSp SINE Alu -2 311 1 22 35 0 0 chrY 21478143 21478172 -3234907 + AT_rich Low_complexity Low_complexity 1 29 0 1965 188 141 91 chrY 21478274 21478452 -3234627 + Charlie1a DNA MER1_type 67 235 -2526 1965 162 0 3 chrY 21478452 21478749 -3234330 + AluSx SINE Alu 5 300 -12 1965 188 141 91 chrY 21478749 21478807 -3234272 + Charlie1a DNA MER1_type 235 289 -2472 1868 164 0 14 chrY 21478807 21479099 -3233980 + AluJb SINE Alu 13 300 -12 1965 188 141 91 chrY 21479099 21479668 -3233411 + Charlie1a DNA MER1_type 289 914 -541 1305 167 0 10 chrY 21479672 21479876 -3233203 + AluJb SINE Alu 87 288 -24 752 216 143 65 chrY 21479907 21480277 -3232802 + Charlie1a DNA MER1_type 1057 1455 0 2379 102 16 3 chrY 21480752 21481057 -3232022 + AluSx SINE Alu 1 309 -3 393 272 185 44 chrY 21481263 21481561 -3231518 + L1ME4a LINE L1 5778 6117 -4 2222 133 3 0 chrY 21482370 21482672 -3230407 + AluSg SINE Alu 1 303 -7 261 0 0 0 chrY 21482834 21482863 -3230216 + (CA)n Simple_repeat Simple_repeat 2 30 0 2009 89 14 38 chrY 21483998 21484290 -3228789 + AluSx SINE Alu 3 287 -25 1155 115 6 0 chrY 21484290 21484446 -3228633 - AluSq SINE Alu -156 157 1 414 0 0 0 chrY 21485539 21485585 -3227494 + (TG)n Simple_repeat Simple_repeat 2 47 0 251 282 70 14 chrY 21485886 21485957 -3227122 + MIR SINE MIR 11 85 -177 186 43 0 0 chrY 21485983 21486006 -3227073 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 217 317 79 0 chrY 21486772 21486873 -3226206 + MIR SINE MIR 84 192 -70 1014 178 141 0 chrY 21490275 21490466 -3222613 - 7SLRNA srpRNA srpRNA -8 312 95 206 296 204 0 chrY 21491221 21491353 -3221726 - MIR SINE MIR -6 256 98 1748 166 10 39 chrY 21491408 21491716 -3221363 - AluSx SINE Alu -8 304 6 189 217 4 0 chrY 21492251 21492296 -3220783 - MIR SINE MIR -62 146 100 198 0 0 0 chrY 21492749 21492771 -3220308 + (A)n Simple_repeat Simple_repeat 1 22 0 222 245 38 0 chrY 21492912 21492965 -3220114 - MIR SINE MIR -59 149 95 253 241 167 28 chrY 21493296 21493404 -3219675 - L2 LINE L2 -3 3310 3188 298 289 141 7 chrY 21493410 21493552 -3219527 - MIR3 SINE MIR -17 191 31 268 331 43 51 chrY 21494430 21494687 -3218392 - MIR SINE MIR -3 259 5 7157 33 8 7 chrY 21495527 21496577 -3216502 + L1PA3 LINE L1 5105 6155 0 2161 126 0 0 chrY 21497911 21498218 -3214861 + AluSx SINE Alu 1 307 0 752 178 8 0 chrY 21498554 21498683 -3214396 + MER5A DNA MER1_type 2 131 -58 1556 194 7 4 chrY 21499434 21499707 -3213372 + AluJo SINE Alu 1 274 -38 548 145 22 46 chrY 21499821 21500057 -3213022 + GA-rich Low_complexity Low_complexity 1 230 0 327 269 119 28 chrY 21500088 21500504 -3212575 + L1ME LINE L1 5189 5654 -467 7076 34 2 0 chrY 21500532 21501416 -3211663 + L1PA2 LINE L1 5266 6151 -4 253 256 35 12 chrY 21501460 21501546 -3211533 + L1ME LINE L1 5798 5885 -236 35979 50 2 0 chrY 21501898 21507335 -3205744 + L1PA4 LINE L1 707 6155 0 403 257 147 110 chrY 21507337 21507751 -3205328 + L1M4 LINE L1 2963 3389 -2757 970 185 42 28 chrY 21507817 21508033 -3205046 - MER20 DNA MER1_type 0 219 1 365 312 63 72 chrY 21508394 21508839 -3204240 + HAL1 LINE L1 23 463 -2044 1604 182 7 52 chrY 21508974 21509314 -3203765 - AluJb SINE Alu 0 312 3 2150 125 20 0 chrY 21509381 21509676 -3203403 + AluSp SINE Alu 1 301 -12 627 257 92 19 chrY 21509703 21509909 -3203170 + HAL1 LINE L1 854 1074 -1433 473 261 116 70 chrY 21509923 21510424 -3202655 + MLT1F LTR MaLR 19 542 0 910 239 102 33 chrY 21510540 21510934 -3202145 + HAL1 LINE L1 1210 1630 -877 844 234 9 51 chrY 21510964 21511178 -3201901 - MIR SINE MIR -30 232 28 375 304 132 21 chrY 21511190 21511433 -3201646 + HAL1 LINE L1 1634 1903 -604 21 0 0 0 chrY 21511462 21511483 -3201596 + AT_rich Low_complexity Low_complexity 1 21 0 262 235 15 0 chrY 21511643 21511711 -3201368 + HAL1 LINE L1 2243 2311 -196 255 61 0 0 chrY 21512570 21512603 -3200476 + (A)n Simple_repeat Simple_repeat 1 33 0 224 314 127 0 chrY 21512711 21512829 -3200250 + MIR SINE MIR 81 213 -49 3326 99 32 8 chrY 21513411 21513884 -3199195 + LTR15 LTR ERV1 1 484 -9 2067 106 3 0 chrY 21513948 21514261 -3198818 + AluSq SINE Alu 1 314 0 211 305 145 15 chrY 21514570 21514701 -3198378 - L2 LINE L2 -1017 2297 2150 359 353 78 60 chrY 21514948 21515166 -3197913 - L1MC4a LINE L1 -1835 5973 5752 300 256 68 34 chrY 21515168 21515285 -3197794 - L2 LINE L2 -1291 2023 1903 219 69 0 0 chrY 21515507 21515536 -3197543 + (TATG)n Simple_repeat Simple_repeat 4 32 0 195 114 0 0 chrY 21515763 21515798 -3197281 + (TATATG)n Simple_repeat Simple_repeat 2 36 0 186 43 0 0 chrY 21515799 21515822 -3197257 + (GA)n Simple_repeat Simple_repeat 1 23 0 805 113 0 0 chrY 21515822 21515928 -3197151 - FLAM_C SINE Alu -36 107 2 305 159 58 43 chrY 21516382 21516451 -3196628 - L1MCa LINE L1 -4359 2067 1998 993 179 0 6 chrY 21516488 21516667 -3196412 - AluJb SINE Alu -3 309 132 352 222 0 0 chrY 21516667 21516730 -3196349 - AluS SINE Alu -239 64 2 523 326 132 36 chrY 21516734 21517099 -3195980 - L1M4 LINE L1 -1559 4587 4188 2175 102 0 3 chrY 21517157 21517460 -3195619 + AluY SINE Alu 1 302 -9 382 222 63 75 chrY 21517463 21517702 -3195377 + L1ME4a LINE L1 5882 6117 -4 1509 255 121 20 chrY 21518522 21519059 -3194020 + MLT1E LTR MaLR 3 593 0 1906 134 13 3 chrY 21519363 21519669 -3193410 + AluSc SINE Alu 1 309 0 2096 112 7 0 chrY 21519813 21520116 -3192963 - AluY SINE Alu -6 305 1 2279 193 174 40 chrY 21520492 21520673 -3192406 + Charlie1a DNA MER1_type 67 222 -2539 1687 182 0 3 chrY 21520673 21520970 -3192109 + AluJb SINE Alu 1 296 -16 2279 193 174 40 chrY 21520970 21521536 -3191543 + Charlie1a DNA MER1_type 222 914 -541 1074 191 0 14 chrY 21521540 21521760 -3191319 + AluJb SINE Alu 87 303 -9 733 215 233 9 chrY 21521783 21522109 -3190970 + Charlie1a DNA MER1_type 1057 1455 0 2091 121 0 0 chrY 21522585 21522875 -3190204 + AluSq SINE Alu 1 290 -23 204 185 0 0 chrY 21523009 21523063 -3190016 + (CA)n Simple_repeat Simple_repeat 2 55 0 373 298 178 40 chrY 21523100 21523375 -3189704 + L1ME4a LINE L1 5778 6090 -31 1975 139 3 0 chrY 21524221 21524522 -3188557 + AluSg SINE Alu 1 302 -8 378 0 0 0 chrY 21524686 21524728 -3188351 + (CA)n Simple_repeat Simple_repeat 2 43 0 864 104 30 8 chrY 21525055 21525189 -3187890 + AluSq/x SINE Alu 3 139 -174 279 79 0 0 chrY 21526150 21526188 -3186891 + (CA)n Simple_repeat Simple_repeat 1 38 0 267 31 0 0 chrY 21527098 21527130 -3185949 + (CAA)n Simple_repeat Simple_repeat 2 33 0 23 0 0 0 chrY 21527700 21527723 -3185356 + AT_rich Low_complexity Low_complexity 1 23 0 21 71 0 0 chrY 21527763 21527805 -3185274 + AT_rich Low_complexity Low_complexity 1 42 0 1997 148 26 50 chrY 21529128 21529512 -3183567 - THE1C LTR MaLR 0 375 1 1962 226 77 26 chrY 21530080 21530694 -3182385 + LTR5 LTR ERVK 1 645 -324 27 29 0 0 chrY 21530736 21530770 -3182309 + AT_rich Low_complexity Low_complexity 1 34 0 1267 232 68 0 chrY 21530995 21531384 -3181695 - HERVK LTR ERVK -1343 5941 5533 11041 187 51 6 chrY 21531607 21534194 -3178885 - HERVK LTR ERVK -1709 5534 2807 2139 90 7 0 chrY 21535349 21535650 -3177429 - AluY SINE Alu -8 303 1 457 279 44 0 chrY 21535652 21535788 -3177291 - Charlie8 DNA MER1_type -2252 165 24 475 257 40 13 chrY 21536021 21536173 -3176906 + MER103 DNA DNA 10 165 -1 229 267 46 51 chrY 21536389 21536584 -3176495 - L2 LINE L2 -667 2647 2454 357 283 80 44 chrY 21537011 21537237 -3175842 + L2 LINE L2 3012 3245 -27 185 269 65 21 chrY 21539940 21540033 -3173046 - MIR3 SINE MIR -31 177 81 252 286 8 40 chrY 21540242 21540368 -3172711 + CT-rich Low_complexity Low_complexity 6 127 0 283 263 40 0 chrY 21540785 21540884 -3172195 + CT-rich Low_complexity Low_complexity 1 103 0 217 311 10 19 chrY 21541316 21541419 -3171660 + (TG)n Simple_repeat Simple_repeat 1 102 0 505 215 111 22 chrY 21541984 21542119 -3170960 + MIR3 SINE MIR 17 163 -45 206 190 0 35 chrY 21542303 21542361 -3170718 + (TATATG)n Simple_repeat Simple_repeat 2 57 0 327 231 130 28 chrY 21543078 21543186 -3169893 - L1MC4 LINE L1 -1342 6700 6582 2253 108 0 0 chrY 21544397 21544703 -3168376 + AluSq SINE Alu 1 306 -7 227 217 0 0 chrY 21545120 21545166 -3167913 + A-rich Low_complexity Low_complexity 1 46 0 317 272 82 34 chrY 21545188 21545335 -3167744 + L1ME4a LINE L1 5962 6115 -6 477 273 73 7 chrY 21546518 21546668 -3166411 + MIR SINE MIR 34 193 -69 340 298 73 34 chrY 21546672 21546850 -3166229 + L1MEd LINE L1 2 186 -5933 2414 74 0 0 chrY 21547106 21547417 -3165662 + AluY SINE Alu 1 311 0 746 232 103 5 chrY 21547714 21547899 -3165180 + MIR SINE MIR 31 233 -29 210 71 0 0 chrY 21547929 21547957 -3165122 + (ATG)n Simple_repeat Simple_repeat 2 29 0 1934 144 0 0 chrY 21548039 21548330 -3164749 + AluSx SINE Alu 1 291 -21 298 294 0 0 chrY 21548479 21548547 -3164532 + L2 LINE L2 3205 3272 0 2303 84 0 7 chrY 21548552 21548862 -3164217 + AluY SINE Alu 1 308 -3 470 308 48 7 chrY 21549220 21549366 -3163713 + MIR SINE MIR 12 163 -99 552 126 0 32 chrY 21549368 21549463 -3163616 + AluJ/FRAM SINE Alu 221 312 0 39 0 0 20 chrY 21549463 21549478 -3163601 + AT_rich Low_complexity Low_complexity 1 15 -34 1997 122 0 3 chrY 21549478 21549766 -3163313 + AluSx SINE Alu 1 287 -25 39 0 0 20 chrY 21549766 21549800 -3163279 + AT_rich Low_complexity Low_complexity 15 49 0 426 261 203 0 chrY 21550596 21550749 -3162330 - MIR3 SINE MIR -3 205 22 526 227 147 0 chrY 21551135 21551285 -3161794 - MIR SINE MIR -29 233 62 28 71 0 0 chrY 21551329 21551385 -3161694 + AT_rich Low_complexity Low_complexity 1 56 0 294 240 47 70 chrY 21551705 21551834 -3161245 - MIR SINE MIR -1 261 136 274 358 45 15 chrY 21552564 21552698 -3160381 + L2 LINE L2 3129 3266 -6 365 324 181 9 chrY 21552882 21553098 -3159981 - MIR SINE MIR -6 256 4 321 336 156 28 chrY 21553244 21553455 -3159624 - MIR SINE MIR 0 262 25 1056 261 134 29 chrY 21553951 21554427 -3158652 + MLT1K LTR MaLR 56 581 -7 446 263 54 67 chrY 21554500 21554611 -3158468 + L2 LINE L2 2999 3107 -206 1492 199 3 17 chrY 21554611 21554633 -3158446 - AluJo SINE Alu -10 302 281 441 0 0 0 chrY 21554633 21554682 -3158397 + (TG)n Simple_repeat Simple_repeat 2 50 0 1492 199 3 17 chrY 21554682 21554961 -3158118 - AluJo SINE Alu -31 281 5 446 263 54 67 chrY 21554961 21555073 -3158006 + L2 LINE L2 3107 3219 -94 378 191 13 4 chrY 21555073 21555163 -3157916 - AluJ/FRAM SINE Alu -4 298 223 2018 125 0 0 chrY 21557193 21557496 -3155583 + AluSg SINE Alu 1 303 -7 200 191 11 79 chrY 21557733 21557822 -3155257 + (CAGGG)n Simple_repeat Simple_repeat 3 85 0 453 157 0 0 chrY 21560584 21560667 -3152412 - AluSq SINE Alu -1 312 230 865 154 21 0 chrY 21560669 21560812 -3152267 - AluSq SINE Alu -162 151 6 935 232 37 35 chrY 21560820 21561279 -3151800 - L1M2 LINE L1 -4226 2623 2071 2140 124 3 22 chrY 21561279 21561594 -3151485 - AluSg SINE Alu -1 309 1 935 232 37 35 chrY 21561594 21561700 -3151379 - L1M2 LINE L1 -4778 2071 1967 665 168 0 0 chrY 21561701 21561802 -3151277 - FLAM_C SINE Alu -40 103 3 691 139 0 19 chrY 21561806 21561914 -3151165 + FLAM_C SINE Alu 29 134 -9 1816 119 3 65 chrY 21561916 21562209 -3150870 + AluSx SINE Alu 37 311 -1 291 285 30 75 chrY 21562604 21562696 -3150383 + L2 LINE L2 3118 3213 -100 2335 112 0 0 chrY 21562696 21563009 -3150070 + AluSq SINE Alu 1 313 0 291 285 30 75 chrY 21563009 21563116 -3149963 + L2 LINE L2 3213 3308 -5 1969 131 0 0 chrY 21563553 21563820 -3149259 + AluSx SINE Alu 1 267 -45 371 236 109 36 chrY 21563947 21564057 -3149022 + L2 LINE L2 3195 3312 -1 190 105 79 0 chrY 21564270 21564308 -3148771 - L2 LINE L2 -609 2705 2665 21 36 0 0 chrY 21564443 21564471 -3148608 + AT_rich Low_complexity Low_complexity 1 28 0 1328 211 48 36 chrY 21564598 21565360 -3147719 - L1M4c LINE L1 -4071 2313 1451 970 141 6 0 chrY 21565362 21565539 -3147540 - L1MA5 LINE L1 0 6300 6123 21 71 0 0 chrY 21565539 21565581 -3147498 + AT_rich Low_complexity Low_complexity 1 42 0 1913 169 17 0 chrY 21566725 21567027 -3146052 - AluJb SINE Alu -5 307 1 489 379 44 26 chrY 21567190 21567740 -3145339 - L2 LINE L2 -2 3270 2710 523 257 0 9 chrY 21567751 21567864 -3145215 - L2 LINE L2 -5 3308 3197 184 167 19 19 chrY 21568143 21568197 -3144882 + (TA)n Simple_repeat Simple_repeat 1 54 0 541 135 0 0 chrY 21568342 21568438 -3144641 - L1MA5 LINE L1 -5 6295 6200 215 189 19 0 chrY 21568477 21568530 -3144549 + (CATATA)n Simple_repeat Simple_repeat 3 56 0 38 75 0 0 chrY 21569895 21569975 -3143104 + AT_rich Low_complexity Low_complexity 1 80 0 2424 91 0 0 chrY 21570047 21570356 -3142723 + AluY SINE Alu 1 309 -2 48 0 0 0 chrY 21570490 21570538 -3142541 + AT_rich Low_complexity Low_complexity 1 48 0 2115 129 31 47 chrY 21571563 21571944 -3141135 + THE1C LTR MaLR 1 375 0 203 286 12 12 chrY 21572031 21572115 -3140964 + (TA)n Simple_repeat Simple_repeat 1 84 0 867 289 68 24 chrY 21572473 21573133 -3139946 - L1ME3A LINE L1 -223 5930 5242 305 248 152 8 chrY 21573147 21573272 -3139807 - L1ME3A LINE L1 -900 5229 5087 970 244 11 15 chrY 21573415 21573677 -3139402 - MLT1D LTR MaLR -10 495 235 39164 47 23 3 chrY 21573678 21579745 -3133334 - L1PA2 LINE L1 0 6155 2 770 223 29 38 chrY 21579745 21579983 -3133096 - MLT1D LTR MaLR -390 236 1 427 278 155 63 chrY 21579986 21580369 -3132710 - L1ME3A LINE L1 -1221 4908 4491 470 228 16 31 chrY 21580369 21580562 -3132517 - L1ME3A LINE L1 -2163 3966 3777 1109 303 72 13 chrY 21580562 21581219 -3131860 - L2 LINE L2 -4 3309 2616 301 342 8 0 chrY 21581383 21581500 -3131579 + L1M4 LINE L1 3524 3641 -2505 255 296 41 36 chrY 21581506 21581702 -3131377 - MER65A LTR ERV1 0 445 249 257 271 149 0 chrY 21582147 21582254 -3130825 + L2 LINE L2 2321 2443 -871 533 289 99 51 chrY 21582937 21583390 -3129689 - L1ME3A LINE L1 -5298 821 347 804 346 36 24 chrY 21583470 21583889 -3129190 - MLT1E LTR MaLR -148 445 22 560 321 94 48 chrY 21585014 21585552 -3127527 - L2 LINE L2 -1 3271 2716 204 257 86 14 chrY 21585642 21585712 -3127367 - L2 LINE L2 0 3313 3239 23 78 0 0 chrY 21585965 21586016 -3127063 + AT_rich Low_complexity Low_complexity 1 51 0 2179 112 6 3 chrY 21586215 21586527 -3126552 - AluSq SINE Alu 0 313 1 5376 111 27 1 chrY 21586662 21587521 -3125558 - L1PA14 LINE L1 -1 6160 5280 873 218 0 29 chrY 21587597 21587771 -3125308 + FAM SINE Alu 4 172 -3 206 128 26 0 chrY 21587793 21587832 -3125247 + (TATATG)n Simple_repeat Simple_repeat 2 41 0 345 100 0 0 chrY 21587991 21588041 -3125038 + (CA)n Simple_repeat Simple_repeat 1 50 0 733 191 112 18 chrY 21589056 21589297 -3123782 - AluJb SINE Alu -5 307 1 335 340 162 11 chrY 21589306 21589577 -3123502 - L2 LINE L2 -112 3201 2890 281 326 22 0 chrY 21589757 21589849 -3123230 + MIR SINE MIR 82 175 -87 1009 229 116 10 chrY 21589853 21590146 -3122933 - MLT1C LTR MaLR 0 467 144 283 348 54 0 chrY 21591093 21591205 -3121874 + MER5B DNA MER1_type 1 118 -60 334 305 182 68 chrY 21592526 21593086 -3119993 - L3 LINE CR1 -10 1567 944 394 314 35 12 chrY 21593097 21593266 -3119813 + LTR33 LTR ERVL 1 173 -348 362 226 105 38 chrY 21593350 21593389 -3119690 + LTR33 LTR ERVL 378 413 -108 1998 163 60 24 chrY 21593389 21593405 -3119674 - MSTB1 LTR MaLR 0 432 418 315 0 0 0 chrY 21593405 21593440 -3119639 + (TG)n Simple_repeat Simple_repeat 2 36 0 1998 163 60 24 chrY 21593440 21593690 -3119389 - MSTB1 LTR MaLR -14 418 143 2204 105 0 3 chrY 21593690 21593984 -3119095 + AluSq SINE Alu 5 297 -16 1998 163 60 24 chrY 21593984 21594133 -3118946 - MSTB1 LTR MaLR -289 143 1 362 226 105 38 chrY 21594133 21594226 -3118853 + LTR33 LTR ERVL 413 519 -2 1972 132 7 0 chrY 21594313 21594624 -3118455 - AluSg SINE Alu 0 310 1 354 261 30 37 chrY 21594691 21594825 -3118254 - L3 LINE CR1 -784 793 661 388 308 163 18 chrY 21594833 21595060 -3118019 + MIR SINE MIR 2 261 -1 2113 143 0 0 chrY 21595483 21595784 -3117295 - AluSx SINE Alu -11 301 1 1297 217 14 39 chrY 21595915 21596201 -3116878 - AluJo SINE Alu -16 296 18 2252 141 0 0 chrY 21596260 21596572 -3116507 - AluSx SINE Alu 0 312 1 322 247 14 14 chrY 21597835 21597908 -3115171 - L3 LINE CR1 -947 630 558 2204 116 7 7 chrY 21598234 21598544 -3114535 + AluSg SINE Alu 1 310 0 180 111 0 0 chrY 21598564 21598591 -3114488 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 519 233 141 5 chrY 21599505 21599789 -3113290 - MLT1I LTR MaLR -3 406 35 202 291 0 0 chrY 21600519 21600574 -3112505 + (CA)n Simple_repeat Simple_repeat 2 56 0 183 129 0 0 chrY 21602018 21602049 -3111030 + (TTG)n Simple_repeat Simple_repeat 2 32 0 482 248 56 110 chrY 21602513 21602564 -3110515 + MLT1H LTR MaLR 62 114 -428 2235 90 0 32 chrY 21602564 21602876 -3110203 + AluY SINE Alu 6 307 -4 482 248 56 110 chrY 21602876 21603158 -3109921 + MLT1H LTR MaLR 114 375 -167 518 327 54 18 chrY 21603322 21603600 -3109479 - L2 LINE L2 -463 2851 2564 2104 152 0 0 chrY 21603646 21603955 -3109124 + AluSc SINE Alu 1 309 0 701 272 31 40 chrY 21604893 21605117 -3107962 - MIR SINE MIR -13 249 28 387 250 125 0 chrY 21605410 21605538 -3107541 - LTR33 LTR ERVL 0 521 378 227 355 0 11 chrY 21605633 21605726 -3107353 - LTR33 LTR ERVL -364 157 66 2104 98 0 21 chrY 21605730 21606041 -3107038 - AluSg SINE Alu 0 305 1 500 285 128 32 chrY 21606281 21606562 -3106517 + L2 LINE L2 2995 3302 -11 3190 170 28 67 chrY 21607055 21607197 -3105882 + LTR39 LTR ERV1 53 199 -584 876 50 17 0 chrY 21607197 21607316 -3105763 + L1PA4 LINE L1 6034 6154 -1 3190 170 28 67 chrY 21607316 21607618 -3105461 + LTR39 LTR ERV1 199 457 -326 2084 151 0 0 chrY 21607618 21607917 -3105162 - AluSx SINE Alu -13 299 1 3190 170 28 67 chrY 21607917 21608231 -3104848 + LTR39 LTR ERV1 457 782 -1 476 265 61 20 chrY 21608238 21608385 -3104694 + MIR SINE MIR 46 198 -64 320 261 35 63 chrY 21609548 21609690 -3103389 + MIR SINE MIR 47 184 -78 305 269 92 35 chrY 21610373 21610514 -3102565 - L2 LINE L2 -1 3271 3123 231 258 131 102 chrY 21610751 21610897 -3102182 - MIR SINE MIR -6 256 116 1702 122 214 25 chrY 21610897 21610961 -3102118 - MSTA LTR MaLR 0 428 377 1883 146 29 0 chrY 21610961 21611263 -3101816 + AluSg SINE Alu 1 282 -28 262 0 0 0 chrY 21611081 21611344 -3101735 + (CA)n Simple_repeat Simple_repeat 2 264 0 1702 122 214 25 chrY 21611263 21611637 -3101442 - MSTA LTR MaLR -51 377 1 231 258 131 102 chrY 21611637 21611734 -3101345 - MIR SINE MIR -146 116 6 2354 90 0 3 chrY 21612466 21612765 -3100314 + AluSx SINE Alu 1 298 -14 2031 140 0 3 chrY 21613380 21613673 -3099406 + AluSq SINE Alu 1 292 -21 1268 240 56 36 chrY 21613674 21614119 -3098960 + LTR37B LTR ERV1 15 468 0 213 328 42 34 chrY 21614632 21614751 -3098328 - MIR SINE MIR -129 133 14 486 180 0 0 chrY 21614751 21614851 -3098228 + CT-rich Low_complexity Low_complexity 4 103 0 596 206 174 0 chrY 21614855 21615010 -3098069 - L2 LINE L2 -14 3299 3118 231 88 0 0 chrY 21615583 21615617 -3097462 + (CA)n Simple_repeat Simple_repeat 2 35 0 521 220 36 36 chrY 21616193 21616361 -3096718 + MER5B DNA MER1_type 11 178 0 308 297 0 0 chrY 21616586 21616677 -3096402 - MIR SINE MIR -108 154 64 890 201 0 6 chrY 21617926 21618131 -3094948 - FRAM SINE Alu 0 176 1 1798 221 37 42 chrY 21618279 21618736 -3094343 - MLT1E3 LTR MaLR -9 615 161 288 280 93 28 chrY 21618966 21619073 -3094006 + MIR SINE MIR 75 188 -74 415 288 212 11 chrY 21619240 21619514 -3093565 + L1ME4a LINE L1 5533 5861 -260 4597 110 44 39 chrY 21620290 21620712 -3092367 - MER4E LTR ERV1 0 779 350 2191 102 20 7 chrY 21620712 21621005 -3092074 + AluSg SINE Alu 1 297 -13 4597 110 44 39 chrY 21621005 21621357 -3091722 - MER4E LTR ERV1 -429 350 1 218 325 25 33 chrY 21621599 21621719 -3091360 + MIR SINE MIR 20 138 -124 239 363 44 28 chrY 21622042 21622224 -3090855 + MER5A DNA MER1_type 2 186 -3 610 234 76 35 chrY 21622369 21622540 -3090539 - MLT1K LTR MaLR -16 572 395 3820 114 32 50 chrY 21622641 21623297 -3089782 - LTR9B LTR ERV1 0 644 1 2010 137 10 3 chrY 21624304 21624603 -3088476 - AluSq SINE Alu -12 301 1 2273 110 0 0 chrY 21625890 21626190 -3086889 - AluSq SINE Alu -13 300 1 23 54 0 0 chrY 21626385 21626422 -3086657 + AT_rich Low_complexity Low_complexity 1 37 0 1525 182 0 18 chrY 21626422 21626702 -3086377 - AluJo SINE Alu -8 304 30 1975 136 7 27 chrY 21627489 21627790 -3085289 - AluSx SINE Alu -17 295 1 475 332 75 26 chrY 21627880 21628106 -3084973 - MIR SINE MIR -14 248 12 1304 187 39 21 chrY 21628247 21628370 -3084709 + AluJb SINE Alu 1 120 -192 243 79 0 0 chrY 21628370 21628408 -3084671 + (TAAA)n Simple_repeat Simple_repeat 1 38 0 1304 187 39 21 chrY 21628408 21628567 -3084512 + AluJb SINE Alu 120 288 -24 2207 104 40 0 chrY 21628857 21629156 -3083923 - AluY SINE Alu 0 311 1 2171 126 0 0 chrY 21629205 21629506 -3083573 + AluSx SINE Alu 1 301 -11 552 247 50 63 chrY 21629563 21629802 -3083277 + MIR SINE MIR 25 260 -2 248 246 18 18 chrY 21629803 21629860 -3083219 - L3 LINE CR1 -101 1476 1420 310 403 62 6 chrY 21629879 21630055 -3083024 - MIR3 SINE MIR -3 205 20 2371 70 0 38 chrY 21630110 21630425 -3082654 - AluY SINE Alu -8 303 1 1631 206 3 0 chrY 21630656 21630938 -3082141 - AluJo SINE Alu -29 283 1 717 233 168 67 chrY 21631321 21631725 -3081354 + MLT1J1 LTR MaLR 1 445 -1 1748 215 115 10 chrY 21632415 21632824 -3080255 - MLT1F1 LTR MaLR 0 567 116 667 200 17 0 chrY 21632849 21632969 -3080110 - FLAM_C SINE Alu -19 124 3 589 241 0 0 chrY 21632970 21633078 -3080001 - MLT1F1 LTR MaLR -434 133 26 279 0 0 0 chrY 21633079 21633110 -3079969 + (TG)n Simple_repeat Simple_repeat 2 32 0 2111 121 3 23 chrY 21633111 21633416 -3079663 - AluSc SINE Alu -10 299 1 1278 148 11 0 chrY 21633421 21633610 -3079469 + AluSg/x SINE Alu 97 287 -25 423 0 0 0 chrY 21633610 21633657 -3079422 + (CA)n Simple_repeat Simple_repeat 2 48 0 690 283 85 0 chrY 21633657 21633834 -3079245 + MLT1F1 LTR MaLR 27 218 -349 263 296 0 0 chrY 21633878 21633949 -3079130 - L2 LINE L2 -16 3297 3227 1651 188 18 0 chrY 21633953 21634229 -3078850 + AluJo SINE Alu 1 281 -31 258 32 0 0 chrY 21634230 21634261 -3078818 + (GGGGA)n Simple_repeat Simple_repeat 4 34 0 2476 65 10 0 chrY 21634688 21634981 -3078098 + AluY SINE Alu 1 296 -15 1067 205 58 5 chrY 21635031 21635255 -3077824 - MER8 DNA MER2_type 0 239 4 426 324 24 29 chrY 21635432 21635639 -3077440 - MIR3 SINE MIR 0 208 3 651 231 193 0 chrY 21635784 21635996 -3077083 - MIR SINE MIR -5 257 5 199 271 17 0 chrY 21636294 21636353 -3076726 + MIR SINE MIR 43 102 -106 2691 167 55 66 chrY 21636714 21637113 -3075966 - L1MB8 LINE L1 0 6178 5787 2186 127 3 3 chrY 21637113 21637420 -3075659 - AluSx SINE Alu 0 312 6 2691 167 55 66 chrY 21637420 21637660 -3075419 - L1MB8 LINE L1 -391 5787 5546 688 246 99 79 chrY 21637732 21637900 -3075179 + L1MC4 LINE L1 7349 7512 -530 2156 126 0 3 chrY 21637900 21638201 -3074878 + AluSx SINE Alu 1 300 -12 688 246 99 79 chrY 21638201 21638408 -3074671 + L1MC4 LINE L1 7512 7713 -329 2512 64 0 0 chrY 21638408 21638706 -3074373 + AluY SINE Alu 1 298 -13 688 246 99 79 chrY 21638706 21638906 -3074173 + L1MC4 LINE L1 7713 8042 0 473 222 18 105 chrY 21640420 21640526 -3072553 - MER103 DNA DNA -3 163 76 2629 53 0 0 chrY 21640526 21640829 -3072250 + AluY SINE Alu 3 305 -6 473 222 18 105 chrY 21640829 21640893 -3072186 - MER103 DNA DNA -90 76 8 445 273 50 42 chrY 21640994 21641254 -3071825 + L1MC5 LINE L1 7580 7841 -120 2040 159 0 0 chrY 21641842 21642143 -3070936 - AluSx SINE Alu -11 301 1 486 309 26 34 chrY 21642424 21642644 -3070435 + MIR SINE MIR 2 214 -48 1984 156 7 0 chrY 21642660 21642968 -3070111 - AluSx SINE Alu -2 310 1 183 129 0 0 chrY 21642993 21643024 -3070055 + (CAT)n Simple_repeat Simple_repeat 1 31 0 2881 140 19 20 chrY 21643087 21643574 -3069505 - LTR45B LTR ERV1 -2 487 2 1898 158 7 0 chrY 21643667 21643951 -3069128 - AluSx SINE Alu -18 294 9 39 50 0 0 chrY 21644203 21644263 -3068816 + AT_rich Low_complexity Low_complexity 1 60 0 462 138 0 0 chrY 21644396 21644461 -3068618 - LOR1b LTR ERV1 0 461 397 953 156 0 0 chrY 21644462 21644603 -3068476 + AluJb SINE Alu 1 141 -171 2634 154 20 7 chrY 21644655 21645097 -3067982 - LOR1a LTR ERV1 -49 448 1 1666 189 7 17 chrY 21645510 21645807 -3067272 - AluJo SINE Alu -18 294 1 427 269 97 16 chrY 21645925 21646111 -3066968 - L1MCc LINE L1 -6205 218 18 21 0 0 0 chrY 21646900 21646921 -3066158 + AT_rich Low_complexity Low_complexity 1 21 0 291 28 0 0 chrY 21648055 21648091 -3064988 + (TC)n Simple_repeat Simple_repeat 1 36 0 * 342 45 0 0 chrY 21648090 21648134 -3064945 + (CA)n Simple_repeat Simple_repeat 1 44 0 232 313 40 30 chrY 21648524 21648623 -3064456 + L2 LINE L2 3167 3266 -6 249 273 49 77 chrY 21648846 21648933 -3064146 - MER5B DNA MER1_type 0 178 90 2399 95 0 0 chrY 21648933 21649237 -3063842 - AluY SINE Alu -7 304 1 249 273 49 77 chrY 21649237 21649252 -3063827 - MER5B DNA MER1_type -88 90 76 3385 122 6 10 chrY 21649252 21649751 -3063328 + LOR1a LTR ERV1 1 497 0 249 273 49 77 chrY 21649751 21649830 -3063249 - MER5B DNA MER1_type -102 76 1 2083 179 2 35 chrY 21650017 21650420 -3062659 + MLT1B LTR MaLR 1 390 0 2228 115 6 6 chrY 21650765 21651077 -3062002 + AluSp SINE Alu 1 312 -1 26 64 0 0 chrY 21651294 21651341 -3061738 + AT_rich Low_complexity Low_complexity 1 47 0 333 287 101 71 chrY 21651485 21651893 -3061186 - L2 LINE L2 -50 3263 2844 1808 171 30 7 chrY 21652213 21652518 -3060561 + AluJo SINE Alu 1 312 0 2025 152 0 0 chrY 21652964 21653261 -3059818 + AluSx SINE Alu 1 297 -15 239 306 82 0 chrY 21653486 21653571 -3059508 + L2 LINE L2 3210 3301 -12 204 102 34 119 chrY 21653842 21653901 -3059178 + L2 LINE L2 3219 3272 0 207 139 0 0 chrY 21654594 21654630 -3058449 + (GA)n Simple_repeat Simple_repeat 1 36 0 248 275 147 37 chrY 21654861 21654970 -3058109 + L2 LINE L2 3193 3313 0 4534 231 81 16 chrY 21654976 21656464 -3056615 + L1MB8 LINE L1 3549 5271 -907 2357 113 0 0 chrY 21656464 21656764 -3056315 + AluSg SINE Alu 1 300 -10 4534 231 81 16 chrY 21656764 21657736 -3055343 + L1MB8 LINE L1 5271 6178 0 2079 125 0 3 chrY 21658340 21658628 -3054451 - AluSg SINE Alu -22 288 2 198 0 0 0 chrY 21660290 21660312 -3052767 + (CA)n Simple_repeat Simple_repeat 2 23 0 795 207 0 30 chrY 21660316 21660485 -3052594 + FRAM SINE Alu 7 170 -6 22 35 0 0 chrY 21660517 21660546 -3052533 + AT_rich Low_complexity Low_complexity 1 29 0 1351 225 7 14 chrY 21660546 21660839 -3052240 - AluSx SINE Alu -21 291 1 1514 270 87 11 chrY 21661425 21662047 -3051032 + LTR65 LTR ERV1 1 669 0 2357 81 7 0 chrY 21662275 21662584 -3050495 + AluY SINE Alu 1 311 0 2176 94 3 25 chrY 21662630 21662948 -3050131 - AluY SINE Alu 0 311 1 319 56 37 0 chrY 21662951 21663005 -3050074 + (TTTTTA)n Simple_repeat Simple_repeat 2 57 0 1299 182 73 11 chrY 21663007 21663282 -3049797 + AluSg SINE Alu 2 293 -17 324 320 148 47 chrY 21663716 21664100 -3048979 + L1MEc LINE L1 56 478 -5918 823 256 13 76 chrY 21664113 21664507 -3048572 - L1M3de LINE L1 -5277 1456 1088 * 1394 271 97 70 chrY 21664479 21665280 -3047799 - L1M2b LINE L1 -6372 837 15 1829 155 6 22 chrY 21665321 21665637 -3047442 - AluSx SINE Alu -1 311 1 2271 281 42 55 chrY 21665674 21666807 -3046272 - L1M3de LINE L1 -4602 2051 286 225 306 56 0 chrY 21667385 21667457 -3045622 - L1M3de LINE L1 -5638 1491 1416 283 323 0 0 chrY 21667485 21667578 -3045501 - L1M3de LINE L1 -6284 845 753 24 32 0 0 chrY 21668075 21668106 -3044973 + AT_rich Low_complexity Low_complexity 1 31 0 270 247 47 24 chrY 21669942 21670027 -3043052 + (TCTCTG)n Simple_repeat Simple_repeat 2 88 0 2371 243 89 41 chrY 21670041 21671119 -3041960 + LTR65-int LTR ERV1 287 1416 -3520 1927 167 10 0 chrY 21671132 21671431 -3041648 + AluSx SINE Alu 1 302 -10 358 221 13 74 chrY 21671518 21671667 -3041412 + MER31-int LTR ERV1 3676 3815 -1121 1153 186 0 83 chrY 21671748 21672001 -3041078 + AluJb SINE Alu 1 232 -80 288 0 0 0 chrY 21672027 21672059 -3041020 + (TA)n Simple_repeat Simple_repeat 1 32 0 658 243 107 27 chrY 21672059 21672546 -3040533 + MER31-int LTR ERV1 4125 4678 -258 640 246 48 66 chrY 21672555 21672697 -3040382 + MLT1A1 LTR MaLR 80 223 -142 1889 125 29 4 chrY 21672697 21673032 -3040047 + AluSc SINE Alu 1 342 0 2164 117 3 19 chrY 21673033 21673349 -3039730 + AluY SINE Alu 1 311 0 640 246 48 66 chrY 21673349 21673474 -3039605 + MLT1A1 LTR MaLR 222 346 -19 1414 216 16 13 chrY 21673768 21674074 -3039005 - AluJb SINE Alu 0 312 6 1390 198 28 25 chrY 21674588 21674871 -3038208 + AluSg SINE Alu 5 288 -22 837 133 22 0 chrY 21675744 21675879 -3037200 - AluSp/q SINE Alu -5 308 171 1187 206 86 37 chrY 21676957 21677385 -3035694 + L1M4 LINE L1 5297 5745 -429 1955 113 7 0 chrY 21677491 21677765 -3035314 + AluY SINE Alu 1 276 -35 353 39 20 0 chrY 21677765 21677816 -3035263 + (TA)n Simple_repeat Simple_repeat 2 53 0 1800 139 8 0 chrY 21677992 21678251 -3034828 + AluSc SINE Alu 1 261 -48 28 61 0 0 chrY 21678606 21678655 -3034424 + AT_rich Low_complexity Low_complexity 1 49 0 22 56 0 0 chrY 21679448 21679484 -3033595 + AT_rich Low_complexity Low_complexity 1 36 0 185 341 135 16 chrY 21680626 21680752 -3032327 + L2 LINE L2 2885 3025 -288 21 36 0 0 chrY 21682583 21682611 -3030468 + AT_rich Low_complexity Low_complexity 1 28 0 315 0 0 0 chrY 21682666 21682701 -3030378 + (CA)n Simple_repeat Simple_repeat 2 36 0 29 0 0 0 chrY 21682846 21682875 -3030204 + AT_rich Low_complexity Low_complexity 1 29 0 824 202 25 62 chrY 21683239 21683482 -3029597 - AluJb SINE Alu -78 234 1 1272 177 49 11 chrY 21683591 21683856 -3029223 + MER1B DNA MER1_type 1 275 -64 292 149 15 45 chrY 21684002 21684069 -3029010 + MER1B DNA MER1_type 262 326 -13 387 305 0 0 chrY 21684081 21684186 -3028893 - FLAM_C SINE Alu -23 110 6 22 0 0 0 chrY 21685489 21685511 -3027568 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chrY 21685698 21685719 -3027360 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chrY 21685789 21685810 -3027269 + AT_rich Low_complexity Low_complexity 1 21 0 27821 68 2 9 chrY 21686304 21691040 -3022039 - L1PA5 LINE L1 -2 6152 1446 5728 56 16 1 chrY 21691040 21691777 -3021302 - L1PA3 LINE L1 0 6155 5408 12338 45 0 1 chrY 21691777 21693379 -3019700 + L1PA3 LINE L1 3803 5403 -743 9551 117 3 0 chrY 21693395 21694851 -3018228 - L1PA5 LINE L1 -4686 1460 1 236 322 99 8 chrY 21695935 21696056 -3017023 + MIR SINE MIR 57 188 -74 366 23 0 0 chrY 21696332 21696375 -3016704 + (CA)n Simple_repeat Simple_repeat 2 44 0 1212 225 11 7 chrY 21696548 21696832 -3016247 + AluSx SINE Alu 13 297 -15 181 200 46 0 chrY 21696935 21697000 -3016079 + CT-rich Low_complexity Low_complexity 2 69 0 * 201 147 0 0 chrY 21696992 21697026 -3016053 + (TTCC)n Simple_repeat Simple_repeat 3 36 0 647 153 51 7 chrY 21697035 21697172 -3015907 - FRAM SINE Alu -9 167 25 1824 241 34 35 chrY 21697267 21697977 -3015102 + L1MC1 LINE L1 5551 6311 -22 414 244 89 44 chrY 21697994 21698309 -3014770 - MER96B DNA MER1_type? -65 352 24 266 211 42 0 chrY 21698360 21698431 -3014648 - MER66A LTR ERV1 -2 476 403 840 221 38 52 chrY 21698473 21698763 -3014316 + pTR5 LTR ERV1 743 1028 -1410 4449 139 78 18 chrY 21698841 21699620 -3013459 + LTR12 LTR ERV1 1 826 0 53782 108 21 10 chrY 21699620 21708039 -3005040 + HERV9 LTR ERV1 1 8399 0 1502 90 369 137 chrY 21708092 21708721 -3004358 + LTR12 LTR ERV1 31 714 0 1077 225 92 22 chrY 21708768 21709084 -3003995 - MER66B LTR ERV1 -148 338 1 1531 201 33 6 chrY 21709084 21709413 -3003666 - MER66B-int LTR ERV1 0 6676 6339 1413 287 31 38 chrY 21709547 21710441 -3002638 - MER66-int LTR ERV1 -1579 6177 4855 1862 176 3 0 chrY 21710441 21710743 -3002336 + AluSc SINE Alu 1 303 -6 1413 287 31 38 chrY 21710743 21710976 -3002103 - MER66-int LTR ERV1 -2901 4855 4622 488 223 19 0 chrY 21711263 21711366 -3001713 - MER2 DNA MER2_type -235 110 6 400 295 28 51 chrY 21711494 21711748 -3001331 - L1M4 LINE L1 -1846 4300 4053 745 341 73 48 chrY 21711783 21711983 -3001096 - L1M4 LINE L1 -2192 3954 3760 1425 207 149 13 chrY 21711983 21712359 -3000720 + MSTA LTR MaLR 1 427 -1 745 341 73 48 chrY 21712359 21713055 -3000024 - L1M4 LINE L1 -2386 3760 3036 185 106 0 96 chrY 21713443 21713537 -2999542 + (TTAA)n Simple_repeat Simple_repeat 2 86 0 30 77 0 0 chrY 21713842 21713907 -2999172 + AT_rich Low_complexity Low_complexity 1 65 0 22 94 0 0 chrY 21714107 21714171 -2998908 + AT_rich Low_complexity Low_complexity 1 64 0 1977 169 17 8 chrY 21714998 21715353 -2997726 - MLT2A1 LTR ERVL -86 358 1 2474 130 29 0 chrY 21715353 21715762 -2997317 - HERVL-A1 LTR ERVL 0 5654 5234 4362 147 18 28 chrY 21715846 21716703 -2996376 - MER61B-int LTR ERV1 -2958 2259 1409 1819 124 28 25 chrY 21716703 21717012 -2996067 - AluY SINE Alu 0 310 1 4362 147 18 28 chrY 21717012 21717061 -2996018 - MER61B-int LTR ERV1 -3808 1409 1361 1642 131 11 0 chrY 21717056 21717323 -2995756 - MER61B-int LTR ERV1 -4004 1213 944 * 1892 222 21 37 chrY 21717332 21717899 -2995180 - MER61B-int LTR ERV1 -4380 837 280 527 167 48 56 chrY 21717959 21718085 -2994994 - MER61B-int LTR ERV1 -5074 143 19 1496 232 22 11 chrY 21718102 21718226 -2994853 - MER61B LTR ERV1 0 425 304 201 39 0 0 chrY 21718226 21718252 -2994827 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1496 232 22 11 chrY 21718252 21718489 -2994590 - MER61B LTR ERV1 -121 304 60 1474 238 22 12 chrY 21718504 21718996 -2994083 - L1M2 LINE L1 -1745 4401 3905 1930 262 43 17 chrY 21719000 21720052 -2993027 + L1M2 LINE L1 4400 5480 -743 1101 290 12 14 chrY 21720064 21720595 -2992484 - BSR/Beta Satellite Satellite -49 530 1 542 260 24 34 chrY 21720689 21721600 -2991479 - BSR/Beta Satellite Satellite 0 901 1 378 244 60 23 chrY 21721623 21721774 -2991305 - BSR/Beta Satellite Satellite -2 156 1 1098 294 13 4 chrY 21721786 21722551 -2990528 - BSR/Beta Satellite Satellite 0 771 1 1352 259 33 10 chrY 21722603 21723387 -2989692 - BSR/Beta Satellite Satellite -44 801 1 607 281 23 21 chrY 21723698 21724497 -2988582 - BSR/Beta Satellite Satellite 0 800 1 883 289 28 32 chrY 21724590 21724715 -2988364 - BSR/Beta Satellite Satellite -63 1021 897 1977 127 6 29 chrY 21724715 21725031 -2988048 - AluY SINE Alu -2 309 1 883 289 28 32 chrY 21725031 21725615 -2987464 - BSR/Beta Satellite Satellite -187 897 1 548 289 11 20 chrY 21725793 21726731 -2986348 - BSR/Beta Satellite Satellite -43 929 1 428 262 5 10 chrY 21726855 21726986 -2986093 - BSR/Beta Satellite Satellite 0 130 1 318 363 98 3 chrY 21726999 21727294 -2985785 - BSR/Beta Satellite Satellite -48 331 9 1068 294 3 6 chrY 21727308 21727635 -2985444 - BSR/Beta Satellite Satellite -9 370 45 383 135 0 14 chrY 21727736 21727810 -2985269 + (TG)n Simple_repeat Simple_repeat 2 74 0 377 326 9 0 chrY 21727917 21728064 -2985015 - BSR/Beta Satellite Satellite -15 148 1 1409 270 8 3 chrY 21728265 21728698 -2984381 - BSR/Beta Satellite Satellite -49 435 1 457 281 42 27 chrY 21728788 21729274 -2983805 - BSR/Beta Satellite Satellite -4 493 1 581 247 9 43 chrY 21729436 21729799 -2983280 - BSR/Beta Satellite Satellite 0 350 1 887 294 10 4 chrY 21729931 21730372 -2982707 - BSR/Beta Satellite Satellite -47 443 1 540 273 17 35 chrY 21730389 21731469 -2981610 - BSR/Beta Satellite Satellite 0 1060 1 357 319 11 23 chrY 21731564 21731763 -2981316 - BSR/Beta Satellite Satellite 0 196 1 777 262 87 7 chrY 21731787 21732062 -2981017 - BSR/Beta Satellite Satellite -42 337 41 888 271 27 33 chrY 21732097 21733004 -2980075 - BSR/Beta Satellite Satellite -22 901 1 530 272 6 30 chrY 21733334 21733973 -2979106 - BSR/Beta Satellite Satellite -6 623 1 1131 290 12 9 chrY 21734247 21734861 -2978218 - BSR/Beta Satellite Satellite -49 615 1 917 245 21 25 chrY 21734997 21735717 -2977362 - BSR/Beta Satellite Satellite -44 2007 1285 1549 248 77 15 chrY 21735717 21736196 -2976883 + LTR22 LTR ERVK 1 509 0 917 245 21 25 chrY 21736196 21737013 -2976066 - BSR/Beta Satellite Satellite -766 1285 1 915 249 11 34 chrY 21737024 21737803 -2975276 - BSR/Beta Satellite Satellite -3 761 1 700 262 45 35 chrY 21737902 21738192 -2974887 - BSR/Beta Satellite Satellite -64 315 23 588 277 21 17 chrY 21738283 21739211 -2973868 - BSR/Beta Satellite Satellite -1 931 1 418 273 0 0 chrY 21739477 21739576 -2973503 - BSR/Beta Satellite Satellite -43 99 1 771 342 12 0 chrY 21739631 21739950 -2973129 - BSR/Beta Satellite Satellite -48 331 9 865 259 100 10 chrY 21739967 21740256 -2972823 - BSR/Beta Satellite Satellite -9 370 56 253 311 11 11 chrY 21740282 21740372 -2972707 - BSR/Beta Satellite Satellite -46 96 7 1856 148 3 35 chrY 21740390 21740701 -2972378 + AluY SINE Alu 1 301 -10 548 250 34 19 chrY 21740709 21741437 -2971642 - BSR/Beta Satellite Satellite -16 739 1 518 251 13 35 chrY 21741753 21742135 -2970944 - BSR/Beta Satellite Satellite 0 373 1 498 266 3 36 chrY 21742193 21742423 -2970656 - BSR/Beta Satellite Satellite 0 222 1 284 347 8 0 chrY 21742440 21742564 -2970515 - BSR/Beta Satellite Satellite -11 131 7 1250 157 32 16 chrY 21742582 21742831 -2970248 - MER11B LTR ERVK 0 1236 984 7609 95 0 11 chrY 21742831 21743923 -2969156 - HERVK11 LTR ERVK -1349 6604 5525 * 10614 71 11 5 chrY 21743921 21745386 -2967693 - HERVK11 LTR ERVK -3352 4601 3128 4487 88 3 0 chrY 21745386 21746002 -2967077 - HERVK11 LTR ERVK -6171 1782 1165 3476 146 50 97 chrY 21746002 21746895 -2966184 - HERVK11 LTR ERVK -7102 851 1 3694 175 23 49 chrY 21746895 21747904 -2965175 - MER11C LTR ERVK 0 1071 1 1227 282 17 18 chrY 21747914 21748598 -2964481 - BSR/Beta Satellite Satellite -49 683 1 376 278 36 22 chrY 21748673 21748946 -2964133 - BSR/Beta Satellite Satellite -1 276 1 479 254 32 34 chrY 21749032 21749726 -2963353 - BSR/Beta Satellite Satellite 0 692 1 768 319 0 3 chrY 21749777 21750161 -2962918 - BSR/Beta Satellite Satellite -46 382 1 888 302 21 18 chrY 21750228 21750562 -2962517 - BSR/Beta Satellite Satellite -16 363 29 504 269 21 31 chrY 21750585 21750941 -2962138 - BSR/Beta Satellite Satellite 0 352 1 460 268 9 27 chrY 21751016 21751454 -2961625 - BSR/Beta Satellite Satellite 0 429 1 1867 141 0 44 chrY 21751486 21751827 -2961252 - AluSg SINE Alu 0 310 1 1131 288 8 7 chrY 21751837 21752625 -2960454 - BSR/Beta Satellite Satellite -1 788 1 1109 269 19 35 chrY 21752661 21753481 -2959598 - BSR/Beta Satellite Satellite -25 806 1 291 379 8 0 chrY 21753563 21753720 -2959359 - BSR/Beta Satellite Satellite -15 158 1 620 286 22 17 chrY 21753882 21754762 -2958317 - BSR/Beta Satellite Satellite -33 884 1 508 271 15 25 chrY 21754791 21754992 -2958087 - BSR/Beta Satellite Satellite 0 198 1 1036 314 0 0 chrY 21755106 21755402 -2957677 - BSR/Beta Satellite Satellite -58 321 26 1136 268 16 29 chrY 21755505 21756558 -2956521 - BSR/Beta Satellite Satellite -46 1600 547 243 0 0 0 chrY 21756558 21756585 -2956494 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1136 268 16 29 chrY 21756585 21757126 -2955953 - BSR/Beta Satellite Satellite -1099 547 1 747 286 9 3 chrY 21757137 21757322 -2955757 - BSR/Beta Satellite Satellite 0 186 1 1988 171 0 3 chrY 21757370 21757680 -2955399 - AluSg SINE Alu -1 309 1 247 302 94 0 chrY 21757687 21757793 -2955286 - BSR/Beta Satellite Satellite -223 156 41 540 290 14 14 chrY 21757870 21758142 -2954937 - BSR/Beta Satellite Satellite 0 271 1 480 276 77 17 chrY 21758150 21758447 -2954632 - L1 LINE L1 -1311 4835 4521 1496 211 10 16 chrY 21758474 21758782 -2954297 + AluSc SINE Alu 1 306 -3 504 270 101 24 chrY 21758784 21759395 -2953684 - L1M4c LINE L1 -3271 2939 2291 259 315 51 23 chrY 21759442 21759699 -2953380 - L1M4c LINE L1 -4751 1461 1198 214 250 0 15 chrY 21759760 21759828 -2953251 + T-rich Low_complexity Low_complexity 3 69 0 341 367 44 24 chrY 21759916 21760164 -2952915 - L1M4c LINE L1 -4982 1159 907 189 0 0 0 chrY 21760231 21760252 -2952827 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 16852 60 2 7 chrY 21760275 21763842 -2949237 - L1PA4 LINE L1 -3 6152 2606 590 51 0 0 chrY 21763842 21763920 -2949159 + L1PA4 LINE L1 2527 2604 -3542 1478 248 23 63 chrY 21764701 21765058 -2948021 - LTR32 LTR ERVL -1 470 135 1776 192 3 0 chrY 21765058 21765360 -2947719 - AluSp SINE Alu -10 303 1 1478 248 23 63 chrY 21765360 21765477 -2947602 - LTR32 LTR ERVL -336 135 15 39098 47 23 1 chrY 21767999 21774014 -2939065 + L1PA2 LINE L1 4 6151 -4 23 0 0 0 chrY 21774019 21774042 -2939037 + AT_rich Low_complexity Low_complexity 1 23 0 1627 186 14 7 chrY 21774324 21774614 -2938465 + AluY SINE Alu 1 292 -19 1464 209 50 0 chrY 21776545 21776708 -2936371 - AluSc SINE Alu -12 297 113 200 59 29 0 chrY 21776708 21776742 -2936337 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 1464 209 50 0 chrY 21776742 21776861 -2936218 - AluSc SINE Alu -196 113 1 6099 257 173 2 chrY 21776900 21778613 -2934466 + L1PA12 LINE L1 1 2007 -5574 1378 300 16 5 chrY 21778612 21778995 -2934084 + L1PA13 LINE L1 346 732 -6055 * 1289 263 53 19 chrY 21779012 21779536 -2933543 + L1PA13 LINE L1 2521 3062 -3735 1497 199 0 0 chrY 21781392 21781658 -2931421 + AluSq SINE Alu 9 274 -39 359 20 0 20 chrY 21781667 21781716 -2931363 + (TAAAA)n Simple_repeat Simple_repeat 2 49 0 212 186 17 34 chrY 21782084 21782143 -2930936 + A-rich Low_complexity Low_complexity 3 60 0 317 353 31 0 chrY 21782214 21782438 -2930641 + L1M4c LINE L1 1370 1600 -4784 2692 165 28 12 chrY 21782452 21783033 -2930046 - LTR10E LTR ERV1 -35 598 9 361 280 111 63 chrY 21783134 21783745 -2929334 + L1M4c LINE L1 2463 3102 -3280 1561 223 7 3 chrY 21783757 21784062 -2929017 - AluSc SINE Alu -3 306 1 2128 126 3 3 chrY 21784168 21784478 -2928601 - AluY SINE Alu -1 310 1 853 70 31 0 chrY 21784586 21784714 -2928365 - L1PA4 LINE L1 -4904 1242 1111 30325 53 7 2 chrY 21784714 21789472 -2923607 + L1PA4 LINE L1 1230 6014 -141 201 167 0 0 chrY 21789479 21789515 -2923564 + A-rich Low_complexity Low_complexity 1 36 0 260 304 15 0 chrY 21789515 21789650 -2923429 + L1 LINE L1 4696 4832 -1314 1053 292 19 12 chrY 21789661 21790829 -2922250 + BSR/Beta Satellite Satellite 1 1176 -21 558 257 16 45 chrY 21790866 21791979 -2921100 + BSR/Beta Satellite Satellite 1 1081 -47 1060 283 21 16 chrY 21792243 21792938 -2920141 + BSR/Beta Satellite Satellite 1 698 0 571 213 11 35 chrY 21793121 21793340 -2919739 + BSR/Beta Satellite Satellite 1 213 0 474 221 84 36 chrY 21793353 21793614 -2919465 + BSR/Beta Satellite Satellite 1 273 -4 1736 131 0 33 chrY 21793624 21793898 -2919181 + AluY SINE Alu 47 311 0 227 281 12 12 chrY 21793905 21793987 -2919092 + BSR/Beta Satellite Satellite 18 99 -43 320 359 4 0 chrY 21794119 21794270 -2918809 + BSR/Beta Satellite Satellite 1 252 0 1123 274 16 21 chrY 21794320 21795331 -2917748 + BSR/Beta Satellite Satellite 1 1005 -16 514 294 4 87 chrY 21795351 21795627 -2917452 + BSR/Beta Satellite Satellite 5 257 -122 314 278 14 62 chrY 21795735 21795879 -2917200 + BSR/Beta Satellite Satellite 2 138 -4 404 260 0 38 chrY 21795959 21796125 -2916954 + BSR/Beta Satellite Satellite 1 159 -53 30 0 0 0 chrY 21796136 21796166 -2916913 + AT_rich Low_complexity Low_complexity 1 30 0 438 290 25 8 chrY 21796169 21796683 -2916396 + BSR/Beta Satellite Satellite 1 522 -4 470 315 7 0 chrY 21796768 21796969 -2916110 + BSR/Beta Satellite Satellite 1 202 -6 732 294 83 14 chrY 21797089 21797365 -2915714 + BSR/Beta Satellite Satellite 36 330 -49 577 301 9 20 chrY 21797400 21797811 -2915268 + BSR/Beta Satellite Satellite 1 406 -20 542 282 5 26 chrY 21797879 21798162 -2914917 + BSR/Beta Satellite Satellite 1 276 -1 540 290 6 7 chrY 21798177 21798570 -2914509 + BSR/Beta Satellite Satellite 1 392 -21 240 355 35 14 chrY 21798727 21798868 -2914211 + BSR/Beta Satellite Satellite 3 146 -6 1244 280 15 6 chrY 21798957 21800171 -2912908 + BSR/Beta Satellite Satellite 1 1224 -19 1159 317 3 10 chrY 21800198 21800700 -2912379 + BSR/Beta Satellite Satellite 1 498 -2 505 275 20 36 chrY 21800731 21801728 -2911351 + BSR/Beta Satellite Satellite 1 980 0 874 274 12 10 chrY 21801981 21802458 -2910621 + BSR/Beta Satellite Satellite 1 477 -81 401 317 0 5 chrY 21802497 21802647 -2910432 + BSR/Beta Satellite Satellite 1 149 -21 553 273 12 24 chrY 21802712 21803752 -2909327 + BSR/Beta Satellite Satellite 1 1027 -6 1216 266 15 16 chrY 21803848 21804464 -2908615 + BSR/Beta Satellite Satellite 1 615 -15 656 276 11 32 chrY 21804747 21805455 -2907624 + BSR/Beta Satellite Satellite 1 692 -7 294 336 22 8 chrY 21805535 21805669 -2907410 + BSR/Beta Satellite Satellite 2 137 -15 916 261 66 32 chrY 21805772 21806096 -2906983 + BSR/Beta Satellite Satellite 1 312 -1121 8349 53 1 0 chrY 21806096 21807061 -2906018 - LTR5 LTR ERVK -3 966 1 916 261 66 32 chrY 21807061 21807158 -2905921 + BSR/Beta Satellite Satellite 312 1433 0 495 277 2 26 chrY 21807171 21807618 -2905461 + BSR/Beta Satellite Satellite 1 436 -50 1029 281 12 12 chrY 21807632 21807963 -2905116 + BSR/Beta Satellite Satellite 41 371 -8 1143 266 13 40 chrY 21807975 21808532 -2904547 + BSR/Beta Satellite Satellite 1 542 -35 402 249 41 14 chrY 21808594 21808728 -2904351 + BSR/Beta Satellite Satellite 1 137 -10 602 256 9 11 chrY 21808741 21809329 -2903750 + BSR/Beta Satellite Satellite 1 586 -63 4549 92 3 0 chrY 21809452 21810075 -2903004 - L1PA5 LINE L1 0 6154 5530 25491 99 23 5 chrY 21810078 21815168 -2897911 - L1PA5 LINE L1 -951 5195 3 1246 296 16 20 chrY 21815240 21816819 -2896260 + BSR/Beta Satellite Satellite 1 1571 -4 659 267 7 34 chrY 21816845 21817256 -2895823 + BSR/Beta Satellite Satellite 1 400 -1 584 287 16 23 chrY 21817370 21818113 -2894966 + BSR/Beta Satellite Satellite 1 737 -46 239 286 77 33 chrY 21818160 21818251 -2894828 + BSR/Beta Satellite Satellite 40 134 -18 225 244 0 0 chrY 21818277 21818322 -2894757 - BSR/Beta Satellite Satellite -46 96 52 483 295 17 24 chrY 21818350 21818632 -2894447 - BSR/Beta Satellite Satellite 0 280 1 1205 282 19 0 chrY 21818645 21819072 -2894007 - BSR/Beta Satellite Satellite -40 435 1 282 354 13 4 chrY 21819145 21819291 -2893788 - BSR/Beta Satellite Satellite -6 147 1 552 285 13 24 chrY 21819388 21820188 -2892891 - BSR/Beta Satellite Satellite -1 791 1 355 239 22 109 chrY 21820276 21820414 -2892665 - BSR/Beta Satellite Satellite 0 142 17 417 196 131 0 chrY 21820414 21820521 -2892558 - AluSp/q SINE Alu -1 312 192 474 300 4 21 chrY 21820533 21820718 -2892361 - BSR/Beta Satellite Satellite -15 181 1 890 258 39 78 chrY 21820741 21821098 -2891981 - BSR/Beta Satellite Satellite -11 368 26 680 261 23 32 chrY 21821220 21822194 -2890885 - BSR/Beta Satellite Satellite 0 964 1 462 261 9 21 chrY 21822314 21822453 -2890626 - BSR/Beta Satellite Satellite 0 137 1 750 294 80 0 chrY 21822521 21822759 -2890320 - BSR/Beta Satellite Satellite -122 257 1 1261 286 16 17 chrY 21822772 21824003 -2889076 - BSR/Beta Satellite Satellite -44 1228 1 320 317 20 20 chrY 21824118 21824260 -2888819 - BSR/Beta Satellite Satellite -3 142 1 547 266 12 44 chrY 21824425 21825032 -2888047 - BSR/Beta Satellite Satellite 0 587 1 959 311 13 17 chrY 21825158 21825894 -2887185 - BSR/Beta Satellite Satellite -25 732 1 478 272 25 0 chrY 21825989 21826166 -2886913 - BSR/Beta Satellite Satellite -3 181 1 4168 140 174 16 chrY 21826187 21827142 -2885937 - MER11B LTR ERVK -23 1213 1 621 255 19 28 chrY 21827143 21827934 -2885145 - BSR/Beta Satellite Satellite -4 783 1 509 263 19 19 chrY 21827945 21828152 -2884927 - BSR/Beta Satellite Satellite -4 206 1 1183 298 19 7 chrY 21828386 21828988 -2884091 - BSR/Beta Satellite Satellite -25 609 1 578 246 21 30 chrY 21829087 21830005 -2883074 - BSR/Beta Satellite Satellite 0 908 1 1221 292 12 19 chrY 21830018 21830669 -2882410 - BSR/Beta Satellite Satellite -44 646 1 365 197 0 0 chrY 21830719 21830780 -2882299 - BSR/Beta Satellite Satellite -40 339 279 1936 166 0 0 chrY 21830790 21831098 -2881981 + AluY SINE Alu 1 308 -3 25 0 0 0 chrY 21831098 21831123 -2881956 + AT_rich Low_complexity Low_complexity 1 25 0 743 266 21 21 chrY 21831143 21831705 -2881374 - BSR/Beta Satellite Satellite -2 562 1 293 281 40 48 chrY 21831706 21831934 -2881145 - L1M4 LINE L1 -1304 5078 4852 1316 176 0 127 chrY 21832060 21832384 -2880695 + AluSc SINE Alu 1 283 -16 372 22 0 0 chrY 21832384 21832429 -2880650 + (CA)n Simple_repeat Simple_repeat 2 46 0 557 276 148 17 chrY 21832433 21832854 -2880225 - L1M4 LINE L1 -3312 3070 2594 38411 96 8 4 chrY 21832861 21838986 -2874093 + L1PA5 LINE L1 2 6153 -1 251 282 19 0 chrY 21839038 21839141 -2873938 - L1M4 LINE L1 -3826 2556 2452 497 348 19 3 chrY 21839165 21839475 -2873604 - L1M4 LINE L1 -4712 1672 1358 233 235 0 85 chrY 21839498 21839651 -2873428 + T-rich Low_complexity Low_complexity 2 141 0 3429 287 192 30 chrY 21839767 21841422 -2871657 - L1PA13 LINE L1 -4525 2262 339 * 5300 267 7 23 chrY 21841420 21843176 -2869903 - L1PA12 LINE L1 -5577 2004 1 30 0 0 0 chrY 21843193 21843223 -2869856 + AT_rich Low_complexity Low_complexity 1 30 0 1159 191 37 0 chrY 21844388 21844603 -2868476 + AluSq SINE Alu 5 227 -86 600 248 0 0 chrY 21845946 21846071 -2867008 + FLAM_C SINE Alu 1 125 -8 738 162 34 0 chrY 21846075 21846192 -2866887 + AluSp SINE Alu 75 195 -118 415 175 0 0 chrY 21846192 21846255 -2866824 + AluS SINE Alu 233 295 -6 * 1462 233 3 39 chrY 21846249 21846580 -2866499 + LTR32 LTR ERVL 112 430 -41 1297 242 44 34 chrY 21847441 21847739 -2865340 + AluSx SINE Alu 2 302 0 204 256 49 0 chrY 21848152 21848234 -2864845 + A-rich Low_complexity Low_complexity 5 90 0 202 238 20 14 chrY 21848245 21848392 -2864687 + A-rich Low_complexity Low_complexity 3 150 0 214 85 21 43 chrY 21848409 21848456 -2864623 + (TAAAAA)n Simple_repeat Simple_repeat 2 47 0 195 190 0 0 chrY 21848602 21848660 -2864419 + A-rich Low_complexity Low_complexity 2 59 0 453 309 32 14 chrY 21848689 21848909 -2864170 + L1M4 LINE L1 2647 2870 -3276 2435 207 49 27 chrY 21848967 21849522 -2863557 + LTR22 LTR ERVK 1 567 -13 1511 146 0 66 chrY 21849566 21849854 -2863225 + HERVK22 LTR ERVK 9 277 -6560 4378 120 106 86 chrY 21849859 21850669 -2862410 + LTR12 LTR ERV1 1 826 0 27322 113 14 10 chrY 21850670 21853125 -2859954 + Harlequin LTR ERV1 43 2485 -4453 2819 7 0 0 chrY 21853125 21853427 -2859652 + AluYa5 SINE Alu 1 302 -9 27322 113 14 10 chrY 21853427 21855778 -2857301 + Harlequin LTR ERV1 2485 4944 -1994 774 103 293 0 chrY 21855779 21856011 -2857068 + Harlequin LTR ERV1 840 1139 -5757 397 296 133 19 chrY 21856619 21856772 -2856307 + L1M4 LINE L1 3985 4119 -2027 297 0 0 0 chrY 21856772 21856805 -2856274 + (CA)n Simple_repeat Simple_repeat 2 34 0 397 296 133 19 chrY 21856805 21856944 -2856135 + L1M4 LINE L1 4119 4241 -1905 1440 199 21 0 chrY 21856944 21857231 -2855848 - AluSp SINE Alu -20 293 1 397 296 133 19 chrY 21857231 21857298 -2855781 + L1M4 LINE L1 4241 4386 -1760 22 0 0 0 chrY 21857853 21857875 -2855204 + AT_rich Low_complexity Low_complexity 1 22 0 612 273 114 36 chrY 21858361 21858581 -2854498 + AluJb SINE Alu 44 280 -32 893 57 16 0 chrY 21858581 21858704 -2854375 + (GAAA)n Simple_repeat Simple_repeat 3 127 0 545 295 7 7 chrY 21858996 21859145 -2853934 + AluJo SINE Alu 118 266 -46 2453 240 90 10 chrY 21859181 21860088 -2852991 + L1M4 LINE L1 4414 5393 -753 21 0 0 0 chrY 21860467 21860488 -2852591 + AT_rich Low_complexity Low_complexity 1 21 0 787 193 19 0 chrY 21861114 21861275 -2851804 - L1P4 LINE L1 -669 5499 5336 576 108 0 0 chrY 21861274 21861357 -2851722 + L1P LINE L1 5343 5425 -729 * 14367 141 23 8 chrY 21861366 21864813 -2848266 - L1PA7 LINE L1 -79 6390 2892 5333 189 17 39 chrY 21864815 21865958 -2847121 - L1PA7 LINE L1 -5340 1121 5 573 250 100 20 chrY 21866008 21866523 -2846556 + L1MC/D LINE L1 5017 5559 -748 1300 245 0 26 chrY 21867160 21867288 -2845791 + AluSx SINE Alu 1 131 -181 1559 217 3 10 chrY 21867288 21867602 -2845477 + AluSx SINE Alu 1 312 0 1300 245 0 26 chrY 21867602 21867779 -2845300 + AluSx SINE Alu 131 298 -14 24 32 0 0 chrY 21867876 21867907 -2845172 + AT_rich Low_complexity Low_complexity 1 31 0 182 312 212 18 chrY 21868084 21868254 -2844825 - MIR SINE MIR -6 256 54 34 24 0 0 chrY 21869200 21869241 -2843838 + AT_rich Low_complexity Low_complexity 1 41 0 24 0 0 0 chrY 21869446 21869470 -2843609 + AT_rich Low_complexity Low_complexity 1 24 0 30 27 0 0 chrY 21869494 21869531 -2843548 + AT_rich Low_complexity Low_complexity 1 37 0 1822 167 10 3 chrY 21872037 21872336 -2840743 + AluSp SINE Alu 1 301 -12 444 267 25 17 chrY 21872456 21872576 -2840503 + FLAM_C SINE Alu 2 122 -11 4588 30 0 0 chrY 21872824 21873389 -2839690 + L1PA3 LINE L1 5616 6180 0 286 331 166 6 chrY 21873737 21873900 -2839179 + L3 LINE CR1 194 382 -1195 1697 190 7 0 chrY 21874423 21874697 -2838382 + AluSg1 SINE Alu 12 287 -22 1698 177 7 14 chrY 21874826 21875120 -2837959 + AluSq SINE Alu 1 292 -21 1251 243 36 4 chrY 21875265 21875545 -2837534 - AluJb SINE Alu -23 289 1 399 303 115 59 chrY 21875773 21876077 -2837002 - L2 LINE L2 -11 3261 2941 305 259 76 87 chrY 21878150 21878335 -2834744 + L1MC4 LINE L1 7842 8024 -18 189 0 0 0 chrY 21878371 21878392 -2834687 + (TTTAA)n Simple_repeat Simple_repeat 3 23 0 690 203 0 30 chrY 21878392 21878525 -2834554 - FLAM_C SINE Alu -2 131 3 331 305 93 42 chrY 21878734 21879185 -2833894 + L1MC1 LINE L1 5271 5771 -2037 302 216 235 26 chrY 21879516 21879669 -2833410 - L1MC3 LINE L1 -1504 6281 6097 709 237 37 18 chrY 21879677 21880049 -2833030 - L1M4 LINE L1 -944 5202 4775 2336 131 15 61 chrY 21880621 21881080 -2831999 + LTR22B LTR ERVK 5 442 -50 1022 133 6 0 chrY 21881131 21881304 -2831775 + (TTTC)n Simple_repeat Simple_repeat 3 176 0 1341 251 0 0 chrY 21881312 21881595 -2831484 - AluSx SINE Alu -29 283 1 568 236 130 0 chrY 21881687 21881848 -2831231 - MER3 DNA MER1_type -4 205 24 213 39 0 0 chrY 21882055 21882081 -2830998 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 628 278 33 0 chrY 21883535 21883686 -2829393 + AluSg/x SINE Alu 121 276 -36 1521 209 17 7 chrY 21883798 21884085 -2828994 + AluSx SINE Alu 1 290 -22 1079 222 5 0 chrY 21884175 21884396 -2828683 + L1MC1 LINE L1 6104 6325 -8 19822 108 16 4 chrY 21884970 21888008 -2825071 + L1P LINE L1 12 3087 -3059 606 93 0 0 chrY 21888018 21888104 -2824975 + L1PA5 LINE L1 11 96 -6050 32413 82 8 7 chrY 21888104 21893625 -2819454 + L1PA5 LINE L1 623 6148 -6 585 151 40 0 chrY 21893891 21894017 -2819062 + GA-rich Low_complexity Low_complexity 3 133 0 710 244 85 5 chrY 21896205 21896406 -2816673 - MER20 DNA MER1_type 0 219 3 1213 281 48 20 chrY 21897186 21897641 -2815438 - MLT1D LTR MaLR -17 488 21 1405 198 0 4 chrY 21897980 21898227 -2814852 + AluSx SINE Alu 1 246 -66 425 202 256 24 chrY 21898249 21898417 -2814662 - MER3 DNA MER1_type 0 209 3 191 133 22 0 chrY 21898855 21898900 -2814179 + (CA)n Simple_repeat Simple_repeat 1 46 0 315 283 58 7 chrY 21899184 21899322 -2813757 - MER58B DNA MER1_type -8 333 189 233 276 246 4 chrY 21899681 21899861 -2813218 - MIR SINE MIR -10 252 30 201 39 0 0 chrY 21900025 21900051 -2813028 + (TTG)n Simple_repeat Simple_repeat 2 27 0 734 205 9 105 chrY 21900093 21900303 -2812776 - AluJb SINE Alu -119 193 4 1027 242 106 26 chrY 21902478 21902903 -2810176 - MLT1C LTR MaLR -7 460 2 26 30 0 0 chrY 21902910 21902943 -2810136 + AT_rich Low_complexity Low_complexity 1 33 0 7064 55 0 2 chrY 21904162 21905441 -2807638 - L1PA4 LINE L1 -1 6154 4873 34542 80 3 1 chrY 21905495 21910353 -2802726 - L1PA4 LINE L1 -1276 4870 1 1477 205 8 0 chrY 21910508 21910771 -2802308 - AluSq SINE Alu -37 276 12 286 211 0 0 chrY 21911366 21911418 -2801661 + AluJ/monomer SINE Alu 3 54 -246 2725 10 0 3 chrY 21912971 21913272 -2799807 - AluYa5 SINE Alu -11 300 1 2206 113 3 3 chrY 21915546 21915856 -2797223 - AluY SINE Alu -1 310 1 1735 153 7 17 chrY 21916281 21916575 -2796504 + AluSg SINE Alu 1 291 -19 7321 163 53 15 chrY 21916575 21918004 -2795075 - L1P3 LINE L1 -4633 1828 356 383 193 12 0 chrY 21918004 21918087 -2794992 - LTR19B-int LTR ERV1 -3293 1924 1841 3198 181 33 21 chrY 21918266 21918879 -2794200 - LTR19B-int LTR ERV1 -7099 620 1 1615 194 55 0 chrY 21918879 21919204 -2793875 - LTR19B LTR ERV1 0 580 238 655 183 0 0 chrY 21919197 21919312 -2793767 - LTR19B LTR ERV1 -465 115 1 * 22 0 0 0 chrY 21920102 21920124 -2792955 + AT_rich Low_complexity Low_complexity 1 22 0 518 147 21 0 chrY 21920347 21920442 -2792637 - AluSc SINE Alu -4 305 209 328 300 22 0 chrY 21920446 21920536 -2792543 - L1MC4 LINE L1 -1338 6704 6613 250 196 0 0 chrY 21920537 21920588 -2792491 - L1MC4 LINE L1 -1339 6703 6653 738 184 0 7 chrY 21920588 21920724 -2792355 - AluY SINE Alu -176 135 1 243 333 53 38 chrY 21920743 21920875 -2792204 + MER5B DNA MER1_type 44 177 -1 21 0 0 0 chrY 21921416 21921437 -2791642 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chrY 21921582 21921608 -2791471 + AT_rich Low_complexity Low_complexity 1 26 0 323 311 64 54 chrY 21921764 21922060 -2791019 - MER46C DNA MER2_type -39 299 1 291 54 0 0 chrY 21922912 21922949 -2790130 + (TTA)n Simple_repeat Simple_repeat 3 39 0 1312 162 0 0 chrY 21922964 21923168 -2789911 - AluSg/x SINE Alu -29 280 77 262 230 162 0 chrY 21923890 21923964 -2789115 - L2 LINE L2 -8 3305 3220 21 0 0 0 chrY 21924212 21924233 -2788846 + AT_rich Low_complexity Low_complexity 1 21 0 476 282 0 47 chrY 21924684 21924833 -2788246 + FRAM SINE Alu 1 141 -35 213 374 128 5 chrY 21924946 21925165 -2787914 + MIR SINE MIR 17 262 0 1066 147 0 0 chrY 21925531 21925688 -2787391 + U1 snRNA snRNA 3 159 -6 27 0 0 0 chrY 21926378 21926405 -2786674 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chrY 21926579 21926600 -2786479 + AT_rich Low_complexity Low_complexity 1 21 0 906 137 0 22 chrY 21926872 21927054 -2786025 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 249 83 0 0 chrY 21927080 21927116 -2785963 + (TTCC)n Simple_repeat Simple_repeat 1 36 0 1520 200 10 7 chrY 21927116 21927411 -2785668 - AluSg SINE Alu -14 296 1 25 31 0 0 chrY 21928003 21928035 -2785044 + AT_rich Low_complexity Low_complexity 1 32 0 786 297 126 34 chrY 21928040 21928542 -2784537 - MER4B-int LTR ERV1 -1011 3180 2633 676 34 0 13 chrY 21928720 21928824 -2784255 - L1PA2 LINE L1 -273 5881 5782 2512 14 0 0 chrY 21928824 21929151 -2783928 + L1PA2 LINE L1 5866 6192 0 301 207 17 0 chrY 21929228 21929286 -2783793 - MER4B-int LTR ERV1 -1547 5211 5153 1129 265 20 36 chrY 21929859 21930304 -2782775 - L1MA4 LINE L1 -1 6299 5862 23 33 0 0 chrY 21930698 21930728 -2782351 + AT_rich Low_complexity Low_complexity 1 30 0 210 37 0 0 chrY 21932285 21932312 -2780767 + (CA)n Simple_repeat Simple_repeat 2 28 0 21 0 0 0 chrY 21933385 21933406 -2779673 + AT_rich Low_complexity Low_complexity 1 21 0 6491 56 1 0 chrY 21933406 21934222 -2778857 - L1PA3 LINE L1 -3 6152 5336 * 15984 44 1 0 chrY 21934220 21936202 -2776877 + L1PA3 LINE L1 3358 5341 -805 811 171 48 88 chrY 21936395 21936623 -2776456 + AluSg SINE Alu 64 282 -28 21 36 0 0 chrY 21936643 21936671 -2776408 + AT_rich Low_complexity Low_complexity 1 28 0 191 227 23 0 chrY 21936721 21936765 -2776314 - L2 LINE L2 -78 3235 3191 450 305 29 0 chrY 21937035 21937209 -2775870 + L1MB7 LINE L1 5985 6163 -21 648 337 104 9 chrY 21937241 21937692 -2775387 - L2 LINE L2 -658 2656 2163 1075 227 54 4 chrY 21937744 21938022 -2775057 + AluJb SINE Alu 1 292 -10 21 36 0 0 chrY 21938039 21938067 -2775012 + AT_rich Low_complexity Low_complexity 1 28 0 1631 167 11 0 chrY 21941187 21941456 -2771623 - AluSg SINE Alu -38 272 1 1331 188 9 0 chrY 21941520 21941744 -2771335 + AluSq SINE Alu 1 226 -87 350 85 17 0 chrY 21941766 21941825 -2771254 + (TAGA)n Simple_repeat Simple_repeat 2 61 0 219 36 0 0 chrY 21941860 21941888 -2771191 + (CA)n Simple_repeat Simple_repeat 1 28 0 632 249 100 20 chrY 21941889 21942239 -2770840 - L1 LINE L1 -768 6797 6420 411 304 80 0 chrY 21942270 21942408 -2770671 - FAM SINE Alu -29 156 8 3664 214 79 41 chrY 21942415 21943590 -2769489 - L1 LINE L1 -1140 6425 5206 6751 129 7 18 chrY 21943590 21944673 -2768406 - MER11C LTR ERVK 0 1071 1 729 90 10 0 chrY 21944673 21944773 -2768306 - HERVK11 LTR ERVK 0 7953 7853 5826 86 18 0 chrY 21944773 21945555 -2767524 - HERVK11 LTR ERVK -201 7752 6957 4682 96 14 0 chrY 21945542 21946186 -2766893 - HERVK11 LTR ERVK -1188 6765 6113 * 699 226 79 97 chrY 21946186 21946527 -2766552 - L1 LINE L1 -2355 5210 4876 1509 238 119 20 chrY 21946552 21947165 -2765914 - L1 LINE L1 -2998 4567 3894 971 287 93 38 chrY 21947194 21947417 -2765662 - L1 LINE L1 -4803 2762 2553 1443 227 3 7 chrY 21947417 21947736 -2765343 - AluSq SINE Alu 0 313 1 971 287 93 38 chrY 21947736 21948267 -2764812 - L1 LINE L1 -5012 2553 1967 466 285 224 0 chrY 21948676 21948841 -2764238 - AluSp SINE Alu -111 202 1 204 358 22 56 chrY 21949325 21949504 -2763575 + L2 LINE L2 2460 2632 -682 23 68 0 0 chrY 21949779 21949823 -2763256 + AT_rich Low_complexity Low_complexity 1 44 0 940 203 0 6 chrY 21951268 21951450 -2761629 - L1M2 LINE L1 -753 5559 5379 725 217 21 0 chrY 21951457 21951600 -2761479 + AluSg/x SINE Alu 128 273 -39 333 102 0 0 chrY 21951610 21951669 -2761410 + (CAAT)n Simple_repeat Simple_repeat 2 60 0 836 204 57 54 chrY 21951683 21951755 -2761324 - L1M2 LINE L1 -769 5377 5307 234 0 0 0 chrY 21951755 21951781 -2761298 + (TTG)n Simple_repeat Simple_repeat 2 27 0 836 204 57 54 chrY 21951781 21951988 -2761091 - L1M2 LINE L1 -839 5307 5097 * 1713 207 10 32 chrY 21951985 21952386 -2760693 + L1MA7 LINE L1 5575 5966 -325 552 301 0 0 chrY 21952387 21952533 -2760546 + FRAM SINE Alu 1 146 -30 935 211 49 84 chrY 21952558 21952731 -2760348 + L1MA7 LINE L1 5958 6115 -176 1568 193 7 0 chrY 21952731 21953016 -2760063 + AluSq SINE Alu 4 290 -23 935 211 49 84 chrY 21953016 21953188 -2759891 + L1MA7 LINE L1 6115 6291 0 25 31 0 0 chrY 21953188 21953220 -2759859 + AT_rich Low_complexity Low_complexity 1 32 0 22 35 0 0 chrY 21953624 21953653 -2759426 + AT_rich Low_complexity Low_complexity 1 29 0 1243 211 17 0 chrY 21953668 21953905 -2759174 - AluSx SINE Alu -71 241 1 235 280 0 0 chrY 21954317 21954367 -2758712 + polypyrimidine Low_complexity Low_complexity 3 52 0 789 221 42 21 chrY 21954367 21954557 -2758522 - AluJo SINE Alu 0 312 119 45 75 0 0 chrY 21955421 21955515 -2757564 + AT_rich Low_complexity Low_complexity 1 94 0 40614 52 26 1 chrY 21956037 21962023 -2751056 - L1PA3 LINE L1 -8 6147 13 1610 190 3 0 chrY 21962107 21962391 -2750688 + AluSx SINE Alu 3 287 -25 349 294 102 61 chrY 21962610 21962855 -2750224 + L1M4 LINE L1 349 603 -5939 380 210 110 20 chrY 21962891 21962991 -2750088 - AluJb SINE Alu -20 282 174 741 263 49 15 chrY 21962998 21963203 -2749876 - AluJb SINE Alu -98 214 3 216 179 0 0 chrY 21963346 21963385 -2749694 + T-rich Low_complexity Low_complexity 2 40 0 1588 293 51 28 chrY 21963403 21964594 -2748485 + L1M4 LINE L1 858 2153 -4493 780 249 145 8 chrY 21964595 21964836 -2748243 + AluJo SINE Alu 11 284 -28 21 57 0 0 chrY 21965022 21965057 -2748022 + AT_rich Low_complexity Low_complexity 1 35 0 31982 134 8 18 chrY 21965065 21970944 -2742135 - L1PA6 LINE L1 -326 5828 11 390 123 0 0 chrY 21970981 21971046 -2742033 - Alu SINE Alu -1 301 237 4361 101 2 0 chrY 21971293 21971879 -2741200 - LTR14C LTR ERVK 0 587 1 244 288 181 54 chrY 21972761 21972966 -2740113 + MIR SINE MIR 31 261 -1 23 33 0 0 chrY 21973840 21973870 -2739209 + AT_rich Low_complexity Low_complexity 1 30 0 442 44 0 77 chrY 21974287 21974378 -2738701 + (TTAAA)n Simple_repeat Simple_repeat 3 86 0 229 305 12 12 chrY 21974428 21974510 -2738569 - HAL1 LINE L1 -598 1909 1828 748 254 56 68 chrY 21975770 21976179 -2736900 - L1ME1 LINE L1 -179 5987 5584 1974 241 58 60 chrY 21976964 21977699 -2735380 + MER50 LTR ERV1 1 734 0 2600 240 48 9 chrY 21977868 21978791 -2734288 - L1MB5 LINE L1 -136 6038 5083 744 176 60 55 chrY 21978803 21978985 -2734094 + L1MB3 LINE L1 5371 5553 -621 563 167 9 9 chrY 21978985 21979099 -2733980 + L1MB3 LINE L1 6068 6181 -2 1742 174 3 10 chrY 21979201 21979505 -2733574 - AluY SINE Alu -9 302 1 346 269 46 15 chrY 21979632 21979762 -2733317 - L1MC3 LINE L1 -1767 6018 5885 1821 145 33 33 chrY 21979960 21980292 -2732787 - LTR22B LTR ERVK -34 458 127 396 107 0 0 chrY 21980289 21980345 -2732734 + AluY SINE Alu 80 135 -166 * 643 209 0 39 chrY 21980345 21980524 -2732555 + AluJo/FRAM SINE Alu 137 309 0 1466 216 9 23 chrY 21980524 21980872 -2732207 + L1P LINE L1 2011 2353 -3793 5547 116 35 3 chrY 21980887 21982189 -2730890 + L1PA8 LINE L1 4826 6166 -6 356 212 99 13 chrY 21982709 21982882 -2730197 - L1MC3 LINE L1 -765 5381 5197 1084 73 0 0 chrY 21982884 21983020 -2730059 - AluY SINE Alu -10 301 166 1383 212 0 18 chrY 21983020 21983303 -2729776 - AluSx SINE Alu -30 282 5 418 293 132 22 chrY 21983315 21983724 -2729355 - L1MC3 LINE L1 -965 5181 4728 910 231 107 12 chrY 21983887 21984129 -2728950 - AluJo SINE Alu -47 265 1 313 296 24 29 chrY 21984131 21984337 -2728742 - L1MC3 LINE L1 -1637 4509 4305 2293 163 30 90 chrY 21985387 21986003 -2727076 - MER4B LTR ERV1 -25 754 9 306 250 42 0 chrY 21986009 21986105 -2726974 - MER31-int LTR ERV1 -1316 3620 3521 1006 229 97 8 chrY 21986378 21986645 -2726434 - AluJo SINE Alu -3 309 19 6256 30 0 0 chrY 21986922 21987655 -2725424 - L1PA3 LINE L1 0 6155 5423 803 315 54 14 chrY 21988303 21988875 -2724204 - L1M4 LINE L1 -1747 4897 4303 333 210 18 18 chrY 21989191 21989358 -2723721 + (TTAGGG)n Simple_repeat Simple_repeat 6 172 0 345 168 0 48 chrY 21989421 21989588 -2723491 + (TTAGGG)n Simple_repeat Simple_repeat 6 164 0 289 182 15 23 chrY 21989623 21989755 -2723324 + (TTAGGG)n Simple_repeat Simple_repeat 4 134 0 260 224 10 0 chrY 21989825 21989923 -2723156 + (TTAGGG)n Simple_repeat Simple_repeat 1 99 0 250 223 10 32 chrY 21990022 21990335 -2722744 + (TTAGGG)n Simple_repeat Simple_repeat 1 305 0 1466 218 10 0 chrY 21990420 21990755 -2722324 - AluSp SINE Alu 0 339 2 784 336 27 5 chrY 21990860 21991223 -2721856 + MER52A LTR ERV1 923 1249 -506 1496 245 90 24 chrY 21992257 21992949 -2720130 - L1M4 LINE L1 -4568 2078 1329 1678 174 11 0 chrY 21992949 21993213 -2719866 - AluSc SINE Alu -22 287 21 1496 245 90 24 chrY 21993213 21993251 -2719828 - L1M4 LINE L1 -5317 1329 1295 305 255 112 27 chrY 21993369 21993557 -2719522 - L1M4c LINE L1 -3886 2498 2295 21 89 0 0 chrY 21993669 21993725 -2719354 + AT_rich Low_complexity Low_complexity 1 56 0 522 40 27 0 chrY 21994714 21994788 -2718291 + L1PA6 LINE L1 6078 6153 -1 351 333 45 50 chrY 21994873 21995074 -2718005 - L2 LINE L2 -352 2962 2763 282 262 0 0 chrY 21995105 21995166 -2717913 + MER20 DNA MER1_type 90 150 -69 1943 96 9 68 chrY 21995414 21995738 -2717341 + AluY SINE Alu 1 305 -6 505 127 0 0 chrY 21996133 21996212 -2716867 - HERVL LTR ERVL -4866 788 710 2432 272 19 7 chrY 21996213 21996797 -2716282 + MER52A LTR ERV1 1161 1751 -4 512 208 264 0 chrY 21996992 21997117 -2715962 - AluSq SINE Alu -19 294 137 1699 180 0 27 chrY 21997426 21997551 -2715528 + AluSq SINE Alu 2 129 -184 309 51 0 0 chrY 21997551 21997590 -2715489 + (CA)n Simple_repeat Simple_repeat 2 40 0 1699 180 0 27 chrY 21997590 21997764 -2715315 + AluSq SINE Alu 129 293 -20 36 40 0 0 chrY 21997904 21997954 -2715125 + AT_rich Low_complexity Low_complexity 1 50 0 898 250 108 4 chrY 21998134 21998366 -2714713 - AluSp SINE Alu -57 256 1 29 70 0 0 chrY 21998466 21998523 -2714556 + AT_rich Low_complexity Low_complexity 1 57 0 383 266 11 21 chrY 22003356 22003450 -2709629 + AluJo SINE Alu 89 181 -121 25 51 0 0 chrY 22003687 22003726 -2709353 + AT_rich Low_complexity Low_complexity 1 39 0 763 282 20 5 chrY 22003850 22004052 -2709027 + AluJ SINE Alu 1 205 -107 210 160 0 0 chrY 22004101 22004151 -2708928 + (CA)n Simple_repeat Simple_repeat 1 50 0 2001 261 8 4 chrY 22004653 22005135 -2707944 - MER1A DNA MER1_type -18 511 28 379 270 40 10 chrY 22005148 22005248 -2707831 + AluJ SINE Alu 198 300 -2 21 36 0 0 chrY 22005251 22005279 -2707800 + AT_rich Low_complexity Low_complexity 1 28 0 1171 189 9 0 chrY 22006152 22006364 -2706715 + AluSq SINE Alu 81 294 -19 219 288 62 0 chrY 22006369 22006449 -2706630 + MIR SINE MIR 177 261 -1 661 273 36 0 chrY 22006722 22006916 -2706163 - MER2 DNA MER2_type -138 207 7 22 35 0 0 chrY 22007013 22007042 -2706037 + AT_rich Low_complexity Low_complexity 1 29 0 2709 26 0 0 chrY 22007668 22007971 -2705108 - AluY SINE Alu -8 303 1 23 78 0 0 chrY 22008253 22008304 -2704775 + AT_rich Low_complexity Low_complexity 1 51 0 1397 224 21 0 chrY 22008898 22009184 -2703895 - AluSx SINE Alu -16 296 5 297 0 0 0 chrY 22009630 22009663 -2703416 + (CA)n Simple_repeat Simple_repeat 2 34 0 183 200 18 27 chrY 22009911 22010021 -2703058 + (TATATG)n Simple_repeat Simple_repeat 6 114 0 259 194 42 0 chrY 22010051 22010271 -2702808 + (TA)n Simple_repeat Simple_repeat 1 229 0 37173 88 2 4 chrY 22010271 22016412 -2696667 - L1PA5 LINE L1 -9 6145 11 1496 204 36 0 chrY 22016990 22017269 -2695810 + AluSx SINE Alu 1 289 -23 1005 299 74 21 chrY 22017837 22018349 -2694730 + L1MDa LINE L1 35 573 -5967 335 340 82 39 chrY 22018329 22018608 -2694471 + L1MDa LINE L1 781 1071 -5469 * 813 219 18 0 chrY 22018631 22018793 -2694286 - MER52C LTR ERV1 0 1278 1114 536 159 35 0 chrY 22018793 22018906 -2694173 + LTR22 LTR ERVK 1 117 -463 1555 189 22 6 chrY 22018923 22019240 -2693839 + LTR22 LTR ERVK 255 576 -4 568 192 149 48 chrY 22019276 22019484 -2693595 - MER52C LTR ERV1 -160 1118 890 1040 277 69 39 chrY 22019488 22020242 -2692837 - L1M4 LINE L1 -942 5204 4428 1720 173 17 7 chrY 22020632 22020927 -2692152 + AluSp SINE Alu 1 298 -15 889 223 17 52 chrY 22021031 22021376 -2691703 - L1MDa LINE L1 -6143 397 65 2463 165 71 4 chrY 22021577 22022056 -2691023 - MER9 LTR ERVK 0 511 1 11652 139 37 44 chrY 22022056 22024216 -2688863 - HERVK9 LTR ERVK 0 5916 3773 7516 140 49 48 chrY 22024207 22024877 -2688202 - HERVK9 LTR ERVK -4419 1497 829 * 204 200 0 83 chrY 22024877 22024937 -2688142 - MER5B DNA MER1_type -69 109 55 7516 140 49 48 chrY 22024937 22025703 -2687376 - HERVK9 LTR ERVK -5087 829 1 2010 186 110 7 chrY 22025703 22025760 -2687319 - MER9 LTR ERVK 0 511 461 225 0 0 0 chrY 22025760 22025785 -2687294 + (CA)n Simple_repeat Simple_repeat 2 26 0 2010 186 110 7 chrY 22025785 22026190 -2686889 - MER9 LTR ERVK -50 461 1 256 211 42 0 chrY 22027509 22027580 -2685499 + MER53 DNA DNA 115 188 -1 245 167 103 0 chrY 22027948 22028026 -2685053 + (ATTTG)n Simple_repeat Simple_repeat 3 88 0 24 32 0 0 chrY 22028504 22028535 -2684544 + AT_rich Low_complexity Low_complexity 1 31 0 1874 133 3 3 chrY 22030847 22031132 -2681947 + AluY SINE Alu 27 311 0 1067 211 59 88 chrY 22032187 22032561 -2680518 - MLT1A1 LTR MaLR 0 365 3 25 31 0 0 chrY 22033340 22033372 -2679707 + AT_rich Low_complexity Low_complexity 1 32 0 387 0 0 0 chrY 22034898 22034941 -2678138 + (TTA)n Simple_repeat Simple_repeat 2 44 0 1423 184 8 0 chrY 22034941 22035180 -2677899 - AluSg SINE Alu -36 274 34 190 309 100 36 chrY 22035399 22035509 -2677570 + L2 LINE L2 3170 3286 -27 2524 203 66 7 chrY 22035816 22036377 -2676702 - LTR4 LTR ERV1 -2 594 1 15334 159 29 15 chrY 22036377 22039149 -2673930 - HERV3 LTR ERV1 0 8426 5616 29960 175 15 9 chrY 22039151 22044522 -2668557 - HERV3 LTR ERV1 -3024 5402 1 656 216 0 0 chrY 22044523 22044648 -2668431 - LTR4 LTR ERV1 0 596 472 537 322 17 13 chrY 22044686 22044916 -2668163 - L1MDa LINE L1 -6191 349 119 225 301 0 32 chrY 22045281 22045374 -2667705 + MIR SINE MIR 124 213 -49 2386 74 0 7 chrY 22046224 22046523 -2666556 - AluY SINE Alu -14 297 1 328 124 5 240 chrY 22046598 22046815 -2666264 - MER53 DNA DNA -1 188 23 21 0 0 0 chrY 22047624 22047645 -2665434 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chrY 22049647 22049670 -2663409 + AT_rich Low_complexity Low_complexity 1 23 0 837 243 64 94 chrY 22051127 22051501 -2661578 - MLT1A1 LTR MaLR 0 365 3 209 247 11 34 chrY 22053652 22053741 -2659338 + CT-rich Low_complexity Low_complexity 4 90 0 258 106 0 0 chrY 22054464 22054511 -2658568 + (T)n Simple_repeat Simple_repeat 1 47 0 265 289 60 0 chrY 22056066 22056149 -2656930 + L2 LINE L2 3206 3293 -20 8597 60 3 2 chrY 22056644 22058533 -2654546 - L1PA5 LINE L1 -2 6152 4261 9609 35 0 0 chrY 22058533 22059825 -2653254 - L1P1 LINE L1 -701 5454 4163 1915 122 4 0 chrY 22059825 22060087 -2652992 - AluY SINE Alu -2 309 47 197 234 39 104 chrY 22060642 22060719 -2652360 - MIR SINE MIR -38 224 153 914 148 15 0 chrY 22060942 22061077 -2652002 + AluSq/x SINE Alu 1 137 -175 14191 96 3 34 chrY 22061079 22063277 -2649802 + L1PA4 LINE L1 7 2137 -4009 5165 68 5 6 chrY 22063266 22064142 -2648937 + L1PA4 LINE L1 5101 5979 -176 * 7322 68 10 0 chrY 22064436 22065452 -2647627 - L1P LINE L1 -1754 4392 3367 2347 31 0 7 chrY 22066890 22067178 -2645901 + L1PA2 LINE L1 5869 6154 -1 1121 63 6 6 chrY 22067178 22067352 -2645727 + L1P LINE L1 3079 3252 -2894 201 74 0 0 chrY 22068191 22068218 -2644861 + (CAAAA)n Simple_repeat Simple_repeat 3 29 0 630 261 68 10 chrY 22068414 22068621 -2644458 + MER20 DNA MER1_type 1 219 0 2781 10 0 0 chrY 22069281 22069613 -2643466 + AluYb8 SINE Alu 1 332 0 257 29 57 0 chrY 22071109 22071144 -2641935 - tRNA-Asp-GAC tRNA tRNA -38 37 1 302 256 16 74 chrY 22071179 22071275 -2641804 + L1ME LINE L1 5616 5705 -416 2162 104 7 13 chrY 22071275 22071574 -2641505 - AluSx SINE Alu -15 297 1 302 256 16 74 chrY 22071574 22071598 -2641481 + L1ME LINE L1 5705 5729 -392 240 224 66 0 chrY 22072754 22072830 -2640249 + G-rich Low_complexity Low_complexity 3 83 0 383 274 111 8 chrY 22073877 22073994 -2639085 - L2 LINE L2 -1 3312 3184 308 289 60 18 chrY 22074234 22074400 -2638679 + L1MEd LINE L1 14 186 -5933 254 205 26 51 chrY 22074445 22074523 -2638556 - MER81 DNA DNA 0 114 39 238 314 92 94 chrY 22074589 22074971 -2638108 + L1MEd LINE L1 269 649 -5470 408 246 191 13 chrY 22075503 22075774 -2637305 - L1M1 LINE L1 -867 3059 2781 1512 199 0 7 chrY 22076675 22076952 -2636127 + AluSx SINE Alu 15 289 -23 72 32 0 0 chrY 22077021 22077114 -2635965 + AT_rich Low_complexity Low_complexity 1 93 0 434 264 39 54 chrY 22077118 22077247 -2635832 + MER5B DNA MER1_type 46 172 -6 380 258 274 0 chrY 22077287 22077411 -2635668 + MER5A DNA MER1_type 16 173 -16 954 293 63 33 chrY 22077508 22077935 -2635144 + LTR67 LTR ERVL 112 551 -6 924 266 72 0 chrY 22078673 22078895 -2634184 - MIR SINE MIR -22 240 3 1348 233 20 39 chrY 22079017 22079459 -2633620 + MLT1A1 LTR MaLR 3 363 -2 1901 159 51 22 chrY 22079463 22079834 -2633245 + MLT1A1-int LTR MaLR 6 387 -1348 782 186 8 0 chrY 22080734 22080863 -2632216 - FLAM_A SINE Alu -2 131 2 567 305 54 36 chrY 22080921 22081422 -2631657 - L1ME LINE L1 -363 5807 5298 216 86 0 0 chrY 22081456 22081491 -2631588 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2063 127 0 0 chrY 22081493 22081784 -2631295 - AluSx SINE Alu -21 291 1 6749 140 130 37 chrY 22082567 22083932 -2629147 - THE1C-int LTR MaLR -87 1493 1 1906 158 32 27 chrY 22083932 22084305 -2628774 - THE1C LTR MaLR 0 375 1 1026 178 5 61 chrY 22084305 22084519 -2628560 + AluJo SINE Alu 106 307 -5 2064 127 0 0 chrY 22085471 22085799 -2627280 + AluSx SINE Alu 1 328 0 567 305 54 36 chrY 22085833 22086334 -2626745 + L1ME LINE L1 5298 5807 -363 782 186 8 0 chrY 22086392 22086521 -2626558 + FLAM_A SINE Alu 2 131 -2 1901 159 51 22 chrY 22087421 22087792 -2625287 - MLT1A1-int LTR MaLR -1348 387 6 1348 233 20 39 chrY 22087796 22088238 -2624841 - MLT1A1 LTR MaLR -2 406 3 924 266 72 0 chrY 22088360 22088582 -2624497 + MIR SINE MIR 3 240 -22 954 293 63 33 chrY 22089320 22089747 -2623332 - LTR67 LTR ERVL -6 551 112 380 258 274 0 chrY 22089844 22089968 -2623111 - MER5A DNA MER1_type -16 173 16 434 264 39 54 chrY 22090008 22090137 -2622942 - MER5B DNA MER1_type -6 172 46 72 32 0 0 chrY 22090141 22090234 -2622845 + AT_rich Low_complexity Low_complexity 1 93 0 1512 199 0 7 chrY 22090303 22090580 -2622499 - AluSx SINE Alu -23 289 15 408 246 191 13 chrY 22091481 22091752 -2621327 + L1M1 LINE L1 2781 3059 -867 238 314 92 94 chrY 22092284 22092666 -2620413 - L1MEd LINE L1 -5470 649 269 254 205 26 51 chrY 22092732 22092810 -2620269 + MER81 DNA DNA 39 114 0 308 289 60 18 chrY 22092855 22093021 -2620058 - L1MEd LINE L1 -5933 186 14 383 274 111 8 chrY 22093261 22093378 -2619701 + L2 LINE L2 3184 3312 -1 240 224 66 0 chrY 22094425 22094501 -2618578 + C-rich Low_complexity Low_complexity 3 83 0 302 256 16 74 chrY 22095657 22095681 -2617398 - L1ME LINE L1 -392 5729 5705 2176 100 7 13 chrY 22095681 22095980 -2617099 + AluSx SINE Alu 1 297 -15 302 256 16 74 chrY 22095980 22096076 -2617003 - L1ME LINE L1 -416 5705 5616 257 29 57 0 chrY 22096111 22096146 -2616933 + tRNA-Asp-GAC tRNA tRNA 1 37 -38 192 40 0 0 chrY 22097642 22097667 -2615412 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 2780 10 0 0 chrY 22097669 22097974 -2615105 - AluYb8 SINE Alu -13 305 1 630 261 68 10 chrY 22098634 22098841 -2614238 - MER20 DNA MER1_type 0 219 1 201 74 0 0 chrY 22099037 22099064 -2614015 + (TTTTG)n Simple_repeat Simple_repeat 3 29 0 216 0 0 0 chrY 22100265 22100289 -2612790 + (T)n Simple_repeat Simple_repeat 1 24 0 333 323 116 66 chrY 22102591 22102987 -2610092 - L3 LINE CR1 -45 1532 1117 216 0 0 0 chrY 22104748 22104772 -2608307 + (T)n Simple_repeat Simple_repeat 1 24 0 227 341 98 24 chrY 22105282 22105405 -2607674 - L3 LINE CR1 -292 1285 1154 225 0 0 0 chrY 22107199 22107224 -2605855 + (T)n Simple_repeat Simple_repeat 1 25 0 206 396 61 24 chrY 22107681 22107845 -2605234 - L3 LINE CR1 -291 1286 1117 240 111 0 0 chrY 22109590 22109626 -2603453 + (T)n Simple_repeat Simple_repeat 1 36 0 186 388 66 26 chrY 22110085 22110237 -2602842 - L3 LINE CR1 -291 1286 1129 22 0 0 0 chrY 22114342 22114364 -2598715 + AT_rich Low_complexity Low_complexity 1 22 0 232 419 36 24 chrY 22114824 22114991 -2598088 - L3 LINE CR1 -292 1285 1117 206 396 61 24 chrY 22117208 22117372 -2595707 - L3 LINE CR1 -291 1286 1117 240 111 0 0 chrY 22119114 22119150 -2593929 + (T)n Simple_repeat Simple_repeat 1 36 0 187 388 66 26 chrY 22119609 22119761 -2593318 - L3 LINE CR1 -291 1286 1129 22 0 0 0 chrY 22125278 22125300 -2587779 + AT_rich Low_complexity Low_complexity 1 22 0 232 419 36 24 chrY 22125760 22125927 -2587152 - L3 LINE CR1 -292 1285 1117 42037 41 21 3 chrY 22126647 22132687 -2580392 - L1PA2 LINE L1 -1 6154 1 250 371 51 40 chrY 22133163 22133338 -2579741 - L3 LINE CR1 -292 1285 1109 34 49 0 37 chrY 22136566 22136647 -2576432 + AT_rich Low_complexity Low_complexity 1 78 0 21 71 0 0 chrY 22138367 22138409 -2574670 + AT_rich Low_complexity Low_complexity 1 42 0 1834 136 17 10 chrY 22139262 22139556 -2573523 - AluSx SINE Alu -16 296 1 2436 51 3 29 chrY 22139895 22140208 -2572871 - AluY SINE Alu -6 305 1 1980 148 0 19 chrY 22140435 22140753 -2572326 + AluJb SINE Alu 1 312 0 202 294 110 55 chrY 22140896 22141059 -2572020 + MIR3 SINE MIR 5 176 -32 2333 179 86 35 chrY 22141145 22141748 -2571331 - L1MB8 LINE L1 0 6178 5545 1521 174 38 51 chrY 22142104 22142288 -2570791 - AluJo SINE Alu 0 312 132 2401 84 0 0 chrY 22142288 22142586 -2570493 - AluY SINE Alu -13 298 1 1521 174 38 51 chrY 22142586 22142717 -2570362 - AluJo SINE Alu -180 132 1 263 254 0 0 chrY 22146259 22146318 -2566761 + (TATATG)n Simple_repeat Simple_repeat 2 60 0 198 0 0 0 chrY 22147308 22147330 -2565749 + (A)n Simple_repeat Simple_repeat 1 22 0 438 237 86 33 chrY 22148304 22148456 -2564623 - MER5A DNA MER1_type -23 166 7 25 31 0 0 chrY 22149112 22149144 -2563935 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chrY 22149322 22149343 -2563736 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chrY 22149461 22149489 -2563590 + AT_rich Low_complexity Low_complexity 1 28 0 433 270 95 0 chrY 22149595 22149743 -2563336 + MIR SINE MIR 53 214 -48 3420 144 29 15 chrY 22150363 22150981 -2562098 - L1MA4 LINE L1 -6 6294 5668 9679 184 25 104 chrY 22150981 22152524 -2560555 - L1 LINE L1 -1374 5793 4129 2331 93 0 3 chrY 22152524 22152836 -2560243 - AluY SINE Alu 0 311 1 9679 184 25 104 chrY 22152836 22153692 -2559387 - L1 LINE L1 -3038 4129 3784 297 51 0 0 chrY 22153692 22153731 -2559348 + (TA)n Simple_repeat Simple_repeat 2 40 0 9679 184 25 104 chrY 22153731 22154691 -2558388 - L1 LINE L1 -3383 3784 2749 9490 187 70 8 chrY 22154688 22155366 -2557713 - L1 LINE L1 -5247 1921 1287 * 750 109 0 0 chrY 22155366 22155494 -2557585 + (TAG)n Simple_repeat Simple_repeat 3 130 0 9490 187 70 8 chrY 22155494 22156612 -2556467 - L1 LINE L1 -5881 1287 13 422 271 101 53 chrY 22156732 22156939 -2556140 - MIR SINE MIR -18 244 28 3196 207 63 36 chrY 22157080 22157547 -2555532 - L1MB5 LINE L1 -9 6165 5712 4661 103 3 7 chrY 22157547 22158229 -2554850 - L1PA14 LINE L1 0 6161 5483 3196 207 63 36 chrY 22158229 22159026 -2554053 - L1MB5 LINE L1 -462 5712 4864 564 217 7 0 chrY 22159405 22159543 -2553536 - L1MA10 LINE L1 -4 6330 6192 1678 229 5 17 chrY 22159556 22159971 -2553108 - L1ME1 LINE L1 -179 5987 5578 456 279 31 31 chrY 22160448 22160577 -2552502 - MER5B DNA MER1_type 0 178 50 2662 198 75 29 chrY 22160600 22161131 -2551948 - L1ME2 LINE L1 -13 6151 5581 2058 133 0 3 chrY 22161131 22161431 -2551648 - AluSg SINE Alu -6 304 6 2662 198 75 29 chrY 22161431 22161566 -2551513 - L1ME2 LINE L1 -583 5581 5454 277 204 0 0 chrY 22161641 22161690 -2551389 - MER5B DNA MER1_type -129 49 1 1982 151 3 3 chrY 22163110 22163435 -2549644 + L1PB3 LINE L1 5829 6153 -1 354 274 111 60 chrY 22164080 22164300 -2548779 + L1ME4a LINE L1 5571 5815 -306 711 261 8 64 chrY 22164300 22164534 -2548545 - MER58A DNA MER1_type -3 221 1 354 274 111 60 chrY 22164534 22164645 -2548434 + L1ME4a LINE L1 5815 5919 -202 360 0 0 0 chrY 22164665 22164705 -2548374 + (TA)n Simple_repeat Simple_repeat 2 41 0 266 267 17 52 chrY 22164708 22164824 -2548255 + HAL1b LINE L1 1203 1314 -34 22 0 0 0 chrY 22164824 22164846 -2548233 + AT_rich Low_complexity Low_complexity 1 22 0 324 232 81 10 chrY 22164883 22164982 -2548097 - MER91C DNA MER1_type -2 138 33 390 301 57 16 chrY 22165024 22165147 -2547932 - L2 LINE L2 -4 3309 3182 184 279 16 16 chrY 22165265 22165326 -2547753 - MIR SINE MIR -61 147 87 385 277 0 0 chrY 22165644 22165756 -2547323 + HAL1b LINE L1 1217 1328 -20 264 346 96 0 chrY 22165864 22165968 -2547111 + L2 LINE L2 3156 3269 -3 1587 121 17 69 chrY 22166360 22166711 -2546368 + Tigger4(Zombi) DNA MER2_type 6 2730 -1 24 0 0 0 chrY 22167233 22167257 -2545822 + AT_rich Low_complexity Low_complexity 1 24 0 779 215 30 8 chrY 22167360 22167551 -2545528 - L1MA9 LINE L1 -182 6118 5921 359 203 43 0 chrY 22167557 22167626 -2545453 - Tigger2a DNA MER2_type -2 442 371 1906 171 38 26 chrY 22167690 22168036 -2545043 - Tigger2a DNA MER2_type -72 362 13 2952 129 35 210 chrY 22168037 22168702 -2544377 - L1 LINE L1 -1342 4804 4382 867 0 0 0 chrY 22168702 22168818 -2544261 + L1PA4 LINE L1 6049 6166 0 2952 129 35 210 chrY 22168818 22169185 -2543894 - L1 LINE L1 -1764 4382 3952 5001 210 83 23 chrY 22169194 22170422 -2542657 - L1ME1 LINE L1 -9 6226 4828 465 71 0 0 chrY 22170422 22170492 -2542587 + (CA)n Simple_repeat Simple_repeat 2 71 0 5001 210 83 23 chrY 22170492 22171297 -2541782 - L1ME1 LINE L1 -1407 4828 4073 2166 165 38 36 chrY 22171297 22171848 -2541231 - MLT2A2 LTR ERVL 0 554 1 5080 232 33 47 chrY 22171848 22172366 -2540713 - L1ME1 LINE L1 -2138 4077 3553 1887 158 0 16 chrY 22172366 22172676 -2540403 - AluSx SINE Alu -1 311 7 5080 232 33 47 chrY 22172676 22172947 -2540132 - L1ME1 LINE L1 -2662 3553 3280 1854 161 0 13 chrY 22172947 22173257 -2539822 - AluSq SINE Alu -3 310 5 5080 232 33 47 chrY 22173257 22174168 -2538911 - L1ME1 LINE L1 -2935 3280 2400 698 198 69 135 chrY 22174170 22174533 -2538546 - MER76 LTR ERV 0 688 350 726 98 0 27 chrY 22174533 22174645 -2538434 + AluSg/x SINE Alu 200 308 -2 903 179 0 0 chrY 22174657 22174836 -2538243 + GA-rich Low_complexity Low_complexity 1 179 0 626 229 118 61 chrY 22174876 22175138 -2537941 - MER76 LTR ERV -393 295 19 529 174 0 20 chrY 22175221 22175319 -2537760 + AluSg1 SINE Alu 2 97 -212 1591 198 55 81 chrY 22175326 22175893 -2537186 - L1ME1 LINE L1 -3996 2400 1849 360 59 0 0 chrY 22175901 22175952 -2537127 - L1MB4 LINE L1 -1 6179 6129 4063 150 58 5 chrY 22175952 22176624 -2536455 - MER50 LTR ERV1 -26 708 1 1752 185 3 0 chrY 22176629 22176926 -2536153 - AluJb SINE Alu -9 303 6 308 296 102 9 chrY 22176936 22177044 -2536035 - MER50 LTR ERV1 -605 129 12 310 111 95 16 chrY 22177051 22177114 -2535965 - LTR8A LTR ERV1 -659 68 1 377 255 114 60 chrY 22177231 22177578 -2535501 - MLT1H LTR MaLR 0 549 66 233 290 29 14 chrY 22178156 22178225 -2534854 + L2 LINE L2 3137 3206 -66 * 527 272 64 53 chrY 22178221 22178504 -2534575 + L2 LINE L2 2472 2757 -557 367 236 123 0 chrY 22178520 22178626 -2534453 + MER63 DNA MER1_type 1 745 -317 524 241 0 6 chrY 22178628 22178798 -2534281 + CT-rich Low_complexity Low_complexity 1 169 0 296 246 167 26 chrY 22178806 22178920 -2534159 + L2 LINE L2 3180 3309 -4 329 283 20 0 chrY 22179113 22179217 -2533862 - MIR SINE MIR -59 149 38 1198 73 0 11 chrY 22180041 22180218 -2532861 + (TTCC)n Simple_repeat Simple_repeat 4 178 0 847 182 0 26 chrY 22180296 22180450 -2532629 - AluJo SINE Alu -160 152 3 215 333 63 9 chrY 22180467 22180578 -2532501 - MIR SINE MIR -76 186 70 207 0 0 0 chrY 22180834 22180857 -2532222 + (A)n Simple_repeat Simple_repeat 1 23 0 241 275 50 50 chrY 22181747 22181827 -2531252 + MLT1J2 LTR MaLR 69 129 -321 729 184 16 40 chrY 22182105 22182230 -2530849 - FLAM_A SINE Alu -11 122 1 2412 185 43 19 chrY 22182523 22183052 -2530027 - L1MB4 LINE L1 -354 5826 5285 729 205 187 0 chrY 22183182 22183348 -2529731 - MIR SINE MIR -37 225 29 1377 279 66 16 chrY 22183368 22183867 -2529212 - MLT1L LTR MaLR -91 524 1 268 268 94 55 chrY 22184815 22184942 -2528137 + L3 LINE CR1 1423 1554 -23 606 228 7 16 chrY 22185015 22185171 -2527908 - MIR SINE MIR -59 203 46 274 227 27 27 chrY 22186269 22186344 -2526735 - MIR SINE MIR -131 131 57 323 212 0 0 chrY 22187012 22187078 -2526001 - MER116 DNA Mariner -6 74 9 1692 241 23 24 chrY 22187774 22188079 -2525000 + MER119 DNA MER1_type 1 358 -225 2299 85 0 31 chrY 22188079 22188398 -2524681 + AluY SINE Alu 1 309 -2 1692 241 23 24 chrY 22188398 22188624 -2524455 + MER119 DNA MER1_type 358 583 0 5331 146 92 91 chrY 22188630 22190453 -2522626 + pTR5 LTR ERV1 743 2438 0 36407 95 6 7 chrY 22190456 22195403 -2517676 + Harlequin LTR ERV1 1 4944 -3455 726 166 137 22 chrY 22195404 22195675 -2517404 + Harlequin LTR ERV1 840 1141 -5755 * 2681 103 11 3 chrY 22195671 22196050 -2517029 + Harlequin LTR ERV1 7501 7882 -517 * 7233 124 17 27 chrY 22196045 22197619 -2515460 + pTR5 LTR ERV1 734 2009 -429 1316 222 24 24 chrY 22197874 22198167 -2514912 + AluJo SINE Alu 1 293 -19 182 33 67 0 chrY 22199183 22199213 -2513866 + (TTTG)n Simple_repeat Simple_repeat 4 35 0 189 107 0 0 chrY 22199528 22199556 -2513523 + (A)n Simple_repeat Simple_repeat 1 28 0 330 355 61 37 chrY 22199786 22200000 -2513079 + L2 LINE L2 2569 2787 -527 211 288 114 30 chrY 22200888 22201020 -2512059 - MIR SINE MIR -11 251 109 585 269 17 21 chrY 22201687 22202771 -2510308 + BSR/Beta Satellite Satellite 1 1079 -6 1063 280 8 33 chrY 22202825 22203374 -2509705 + BSR/Beta Satellite Satellite 1 535 -37 2374 239 70 22 chrY 22203404 22204453 -2508626 - L1M3 LINE L1 -703 5480 4394 1859 234 20 8 chrY 22204450 22204945 -2508134 + L1M3 LINE L1 3905 4405 -1741 * 1031 199 11 6 chrY 22205105 22205281 -2507798 + MER61B LTR ERV1 1 177 -248 12479 178 30 16 chrY 22205325 22209047 -2504032 + MER61B-int LTR ERV1 1454 5217 0 1933 224 9 42 chrY 22209052 22209486 -2503593 + MER61B LTR ERV1 6 425 0 514 284 31 5 chrY 22209498 22209720 -2503359 - L1M4 LINE L1 -1277 5571 5344 1308 204 0 19 chrY 22209730 22209994 -2503085 + AluJb SINE Alu 11 269 -43 304 294 29 0 chrY 22210011 22210113 -2502966 - L1M4 LINE L1 -1498 5350 5246 378 353 17 4 chrY 22210142 22210377 -2502702 - L1M4 LINE L1 -3262 3586 3349 305 295 67 54 chrY 22210383 22210698 -2502381 - L1M4 LINE L1 -4765 2084 1766 182 214 0 14 chrY 22210723 22210793 -2502286 + T-rich Low_complexity Low_complexity 3 71 0 1621 141 53 42 chrY 22211183 22211466 -2501613 - AluSx SINE Alu -26 286 1 1613 251 15 62 chrY 22212373 22212839 -2500240 - LTR32 LTR ERVL -21 450 7 2870 10 0 0 chrY 22213222 22213553 -2499526 - AluYa5 SINE Alu 0 331 1 1743 164 0 11 chrY 22216292 22216573 -2496506 + AluSc SINE Alu 5 282 -27 309 109 0 0 chrY 22216573 22216619 -2496460 + (TAAG)n Simple_repeat Simple_repeat 2 47 0 1863 170 3 0 chrY 22217404 22217698 -2495381 - AluSq SINE Alu -18 295 1 23 33 0 0 chrY 22218865 22218895 -2494184 + AT_rich Low_complexity Low_complexity 1 30 0 6877 263 55 8 chrY 22218912 22220053 -2493026 + L1PA12 LINE L1 1 1086 -6495 1239 60 0 27 chrY 22220053 22220238 -2492841 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 6877 263 55 8 chrY 22220238 22220305 -2492774 + L1PA12 LINE L1 1086 1148 -6433 1843 161 3 7 chrY 22220305 22220596 -2492483 - AluSp SINE Alu -21 292 3 6877 263 55 8 chrY 22220596 22221299 -2491780 + L1PA12 LINE L1 1148 2004 -5577 3379 270 164 32 chrY 22221297 22223779 -2489300 + L1PA13 LINE L1 339 3153 -3644 * 1798 179 0 0 chrY 22225592 22225888 -2487191 + AluSq SINE Alu 2 297 -16 4066 45 29 0 chrY 22225888 22226275 -2486804 + L1PA4 LINE L1 5612 6020 -152 189 0 0 0 chrY 22226275 22226296 -2486783 + (AGGGGG)n Simple_repeat Simple_repeat 2 22 0 4066 45 29 0 chrY 22226296 22226454 -2486625 + L1PA4 LINE L1 6020 6172 0 234 29 0 29 chrY 22226419 22226621 -2486458 + (TAA)n Simple_repeat Simple_repeat 3 203 0 281 234 32 0 chrY 22226988 22227082 -2485997 + A-rich Low_complexity Low_complexity 4 100 0 354 329 27 14 chrY 22227151 22227443 -2485636 + L1M4c LINE L1 1370 1665 -4719 571 287 100 35 chrY 22227459 22228089 -2484990 + L1M4c LINE L1 2443 3113 -3269 1618 160 24 3 chrY 22228094 22228381 -2484698 - AluSc SINE Alu -16 293 1 520 281 46 23 chrY 22228411 22228713 -2484366 + L1 LINE L1 4524 4832 -1314 1118 278 14 9 chrY 22228724 22229851 -2483228 + BSR/Beta Satellite Satellite 1 1132 -59 602 275 13 19 chrY 22229916 22230993 -2482086 + BSR/Beta Satellite Satellite 1 1069 -6 1036 293 20 19 chrY 22231089 22231730 -2481349 + BSR/Beta Satellite Satellite 1 641 0 560 288 6 20 chrY 22231996 22232592 -2480487 + BSR/Beta Satellite Satellite 1 587 -34 413 243 48 0 chrY 22233006 22233109 -2479970 + BSR/Beta Satellite Satellite 1 108 -271 394 284 9 18 chrY 22233122 22233354 -2479725 + BSR/Beta Satellite Satellite 1 229 -6 992 293 14 22 chrY 22233450 22234006 -2479073 + BSR/Beta Satellite Satellite 1 551 -3 231 378 0 0 chrY 22234085 22234204 -2478875 + BSR/Beta Satellite Satellite 3 121 -21 508 284 19 22 chrY 22234337 22235056 -2478023 + BSR/Beta Satellite Satellite 1 716 -64 311 341 42 2 chrY 22235129 22235337 -2477742 + BSR/Beta Satellite Satellite 1 216 -7 1125 283 16 14 chrY 22235363 22236178 -2476901 + BSR/Beta Satellite Satellite 1 816 -44 1122 305 3 9 chrY 22236250 22237072 -2476007 + BSR/Beta Satellite Satellite 1 817 -35 611 281 10 18 chrY 22237117 22238036 -2475043 + BSR/Beta Satellite Satellite 1 912 -6 895 273 22 11 chrY 22238132 22238403 -2474676 + BSR/Beta Satellite Satellite 21 294 -85 522 204 4 49 chrY 22238512 22238692 -2474387 + BSR/Beta Satellite Satellite 1 171 -21 2083 239 71 19 chrY 22238699 22239724 -2473355 - L1M2 LINE L1 -743 5403 4400 301 250 9 17 chrY 22239728 22239844 -2473235 + L1 LINE L1 3905 4019 -2127 1222 184 37 7 chrY 22239878 22240149 -2472930 + MER61B-int LTR ERV1 3598 3876 -1341 4325 178 30 25 chrY 22240150 22241375 -2471704 + MER61B-int LTR ERV1 1629 5217 0 2052 218 17 9 chrY 22241375 22241797 -2471282 + MER61B LTR ERV1 1 425 0 426 294 19 9 chrY 22241822 22242036 -2471043 - L1 LINE L1 -1290 4856 4641 1180 242 3 46 chrY 22242047 22242332 -2470747 + AluJb SINE Alu 13 285 -27 478 296 6 6 chrY 22242512 22242688 -2470391 - L1MEd LINE L1 -3324 2805 2630 305 293 96 54 chrY 22242694 22243008 -2470071 - L1MEd LINE L1 -4984 1135 809 403 237 28 28 chrY 22243008 22243185 -2469894 + T-rich Low_complexity Low_complexity 2 178 0 1716 168 10 26 chrY 22243592 22243896 -2469183 - AluSx SINE Alu -11 301 3 2521 62 0 0 chrY 22243940 22244245 -2468834 + AluY SINE Alu 6 310 -1 996 269 16 47 chrY 22245099 22245419 -2467660 - LTR32 LTR ERVL -1 470 161 732 63 0 0 chrY 22245422 22245517 -2467562 + AluY SINE Alu 6 100 -211 376 263 45 45 chrY 22245580 22245736 -2467343 - LTR32 LTR ERVL -301 170 15 507 60 0 0 chrY 22247443 22247510 -2465569 + (TG)n Simple_repeat Simple_repeat 2 68 0 1818 180 0 0 chrY 22248807 22249102 -2463977 + AluY SINE Alu 1 295 -16 2114 116 3 31 chrY 22250733 22251076 -2462003 + AluSp SINE Alu 1 334 0 1741 179 3 7 chrY 22251322 22251623 -2461456 - AluSc SINE Alu -9 300 1 5560 254 9 4 chrY 22251662 22253389 -2459690 + L1PA12 LINE L1 1 2004 -5577 3947 270 117 32 chrY 22253387 22255342 -2457737 + L1PA13 LINE L1 339 2127 -4670 * 5111 166 20 45 chrY 22255342 22256436 -2456643 - MER11C LTR ERVK -4 1067 1 3947 270 117 32 chrY 22256436 22256591 -2456488 + L1PA13 LINE L1 2127 2267 -4530 277 23 0 45 chrY 22256591 22256635 -2456444 + (CAAAA)n Simple_repeat Simple_repeat 3 44 0 3947 270 117 32 chrY 22256635 22257079 -2456000 + L1PA13 LINE L1 2267 3162 -3635 610 187 0 0 chrY 22258447 22258554 -2454525 + AluSq/x SINE Alu 1 107 -205 236 175 25 62 chrY 22258703 22258783 -2454296 + A-rich Low_complexity Low_complexity 3 79 0 397 309 39 25 chrY 22258849 22259134 -2453945 + L1M4c LINE L1 1370 1658 -4726 670 283 79 25 chrY 22259159 22259794 -2453285 + L1M4c LINE L1 2445 3110 -3272 703 175 54 60 chrY 22259795 22259961 -2453118 - AluSg/x SINE Alu -10 300 136 536 328 53 10 chrY 22259990 22260292 -2452787 + L1 LINE L1 4521 4835 -1311 531 266 9 29 chrY 22260302 22260620 -2452459 + BSR/Beta Satellite Satellite 1 311 -3 1112 284 12 19 chrY 22260653 22262581 -2450498 + BSR/Beta Satellite Satellite 1 1914 -13 960 286 16 12 chrY 22262684 22263321 -2449758 + BSR/Beta Satellite Satellite 1 639 0 459 271 23 34 chrY 22263408 22264197 -2448882 + BSR/Beta Satellite Satellite 1 780 -23 267 323 14 9 chrY 22264370 22264494 -2448585 + BSR/Beta Satellite Satellite 1 124 -14 842 256 62 17 chrY 22264587 22265354 -2447725 + BSR/Beta Satellite Satellite 1 801 -44 1021 294 10 3 chrY 22265424 22266028 -2447051 + BSR/Beta Satellite Satellite 1 608 -122 268 319 11 0 chrY 22266138 22266232 -2446847 + BSR/Beta Satellite Satellite 1 95 -47 506 284 23 15 chrY 22266373 22267493 -2445586 + BSR/Beta Satellite Satellite 1 1128 0 695 336 13 10 chrY 22267581 22267879 -2445200 + BSR/Beta Satellite Satellite 21 319 -60 579 243 21 43 chrY 22267926 22268141 -2444938 + BSR/Beta Satellite Satellite 1 210 0 326 373 0 0 chrY 22268217 22268335 -2444744 + BSR/Beta Satellite Satellite 4 121 -21 597 271 26 21 chrY 22268480 22269196 -2443883 + BSR/Beta Satellite Satellite 1 719 -68 275 334 27 15 chrY 22269262 22269404 -2443675 + BSR/Beta Satellite Satellite 2 264 -6 235 143 0 24 chrY 22269431 22269473 -2443606 + BSR/Beta Satellite Satellite 321 361 -18 1157 267 44 19 chrY 22269491 22271086 -2441993 + BSR/Beta Satellite Satellite 1 1634 -46 533 270 14 21 chrY 22271152 22272246 -2440833 + BSR/Beta Satellite Satellite 1 1086 -46 1106 309 25 18 chrY 22272311 22273070 -2440009 + BSR/Beta Satellite Satellite 1 764 -23 1074 261 16 34 chrY 22273142 22275030 -2438049 + BSR/Beta Satellite Satellite 1 1854 -6 1325 294 5 7 chrY 22275128 22275465 -2437614 + BSR/Beta Satellite Satellite 1 336 -6 594 247 4 38 chrY 22275541 22275801 -2437278 + BSR/Beta Satellite Satellite 1 251 -32 243 330 11 0 chrY 22275870 22275958 -2437121 + BSR/Beta Satellite Satellite 43 131 -11 627 261 11 30 chrY 22276024 22276634 -2436445 + BSR/Beta Satellite Satellite 1 598 -27 357 341 18 11 chrY 22276804 22277022 -2436057 + BSR/Beta Satellite Satellite 1 219 -7 1457 257 24 23 chrY 22277042 22277861 -2435218 + BSR/Beta Satellite Satellite 1 819 -43 1281 303 20 7 chrY 22277942 22278741 -2434338 + BSR/Beta Satellite Satellite 1 810 -35 189 178 0 0 chrY 22278745 22278790 -2434289 + A-rich Low_complexity Low_complexity 4 48 0 543 270 20 25 chrY 22278815 22279656 -2433423 + BSR/Beta Satellite Satellite 1 836 -42 1296 277 25 12 chrY 22279727 22281635 -2431444 + BSR/Beta Satellite Satellite 1 1932 -6 1399 257 0 0 chrY 22281742 22282038 -2431041 + BSR/Beta Satellite Satellite 35 330 -49 538 289 12 21 chrY 22282101 22282425 -2430654 + BSR/Beta Satellite Satellite 1 321 -10 561 271 13 40 chrY 22282583 22283344 -2429735 + BSR/Beta Satellite Satellite 1 740 -6 1349 290 16 20 chrY 22283398 22284102 -2428977 + BSR/Beta Satellite Satellite 1 701 0 738 265 24 27 chrY 22284146 22285071 -2428008 + BSR/Beta Satellite Satellite 1 922 -178 524 277 15 34 chrY 22285086 22285375 -2427704 + BSR/Beta Satellite Satellite 1 283 -43 553 266 25 33 chrY 22285692 22286390 -2426689 + BSR/Beta Satellite Satellite 1 692 -7 278 380 0 0 chrY 22286499 22286656 -2426423 + BSR/Beta Satellite Satellite 1 157 -1 1333 285 31 3 chrY 22286709 22287123 -2425956 + BSR/Beta Satellite Satellite 1 425 -12 541 264 15 8 chrY 22287248 22287573 -2425506 + BSR/Beta Satellite Satellite 1 327 -34 1238 261 26 41 chrY 22287643 22289266 -2423813 + BSR/Beta Satellite Satellite 1 1599 -27 301 304 11 11 chrY 22289280 22289372 -2423707 + BSR/Beta Satellite Satellite 5 96 -46 1086 273 9 19 chrY 22289387 22289709 -2423370 + BSR/Beta Satellite Satellite 45 363 -16 1023 304 3 3 chrY 22289725 22290185 -2422894 + BSR/Beta Satellite Satellite 1 460 -47 648 242 16 18 chrY 22290246 22290838 -2422241 + BSR/Beta Satellite Satellite 1 591 -44 2317 106 0 3 chrY 22290843 22291155 -2421924 - AluY SINE Alu 0 311 1 594 257 36 28 chrY 22291178 22291632 -2421447 + BSR/Beta Satellite Satellite 1 457 -6 1290 312 10 12 chrY 22291729 22292133 -2420946 + BSR/Beta Satellite Satellite 1 402 -10 469 307 9 35 chrY 22292144 22292564 -2420515 + BSR/Beta Satellite Satellite 1 409 -11 655 250 9 42 chrY 22292631 22293133 -2419946 + BSR/Beta Satellite Satellite 1 485 -4 258 295 49 16 chrY 22293208 22293330 -2419749 + BSR/Beta Satellite Satellite 1 126 -16 338 276 24 52 chrY 22293427 22293523 -2419556 + BSR/Beta Satellite Satellite 1 98 -429 1870 121 48 4 chrY 22293523 22293826 -2419253 + AluSq SINE Alu 1 315 0 338 276 24 52 chrY 22293826 22293940 -2419139 + BSR/Beta Satellite Satellite 98 498 -29 1106 290 18 16 chrY 22293965 22294784 -2418295 + BSR/Beta Satellite Satellite 1 820 -44 1142 307 6 3 chrY 22294852 22295516 -2417563 + BSR/Beta Satellite Satellite 1 666 -64 633 259 15 26 chrY 22295576 22296577 -2416502 + BSR/Beta Satellite Satellite 1 990 -43 1303 304 15 18 chrY 22296709 22297413 -2415666 + BSR/Beta Satellite Satellite 1 701 0 609 261 10 24 chrY 22297601 22298236 -2414843 + BSR/Beta Satellite Satellite 1 626 -9 314 325 47 25 chrY 22298355 22298608 -2414471 + BSR/Beta Satellite Satellite 1 258 -4 260 222 0 19 chrY 22298626 22298680 -2414399 + BSR/Beta Satellite Satellite 1 53 -326 2269 208 27 29 chrY 22298698 22299217 -2413862 - LTR22 LTR ERVK -62 518 1 468 281 12 7 chrY 22299217 22299399 -2413680 + BSR/Beta Satellite Satellite 1 182 0 1268 287 15 11 chrY 22299445 22300652 -2412427 + BSR/Beta Satellite Satellite 1 1211 -53 620 226 16 20 chrY 22300714 22300948 -2412131 + BSR/Beta Satellite Satellite 1 232 -51 618 245 20 11 chrY 22300994 22301663 -2411416 + BSR/Beta Satellite Satellite 1 675 -6 1419 268 15 26 chrY 22301766 22303260 -2409819 + BSR/Beta Satellite Satellite 1 1477 -37 235 281 0 0 chrY 22303297 22303361 -2409718 + BSR/Beta Satellite Satellite 15 78 -64 386 292 32 8 chrY 22303409 22303561 -2409518 + BSR/Beta Satellite Satellite 1 155 -15 964 287 32 2 chrY 22303708 22304074 -2409005 + BSR/Beta Satellite Satellite 1 376 0 678 270 5 27 chrY 22304133 22304484 -2408595 + BSR/Beta Satellite Satellite 1 343 -30 970 311 23 12 chrY 22304555 22305214 -2407865 + BSR/Beta Satellite Satellite 1 666 -49 382 263 6 6 chrY 22305226 22305358 -2407721 + BSR/Beta Satellite Satellite 1 132 -35 652 258 10 26 chrY 22305407 22306487 -2406592 + BSR/Beta Satellite Satellite 1 1062 -6 740 272 10 96 chrY 22306609 22306794 -2406285 + BSR/Beta Satellite Satellite 46 196 -183 1760 155 0 4 chrY 22306794 22307101 -2405978 - AluSc SINE Alu 0 308 3 740 272 10 96 chrY 22307101 22307226 -2405853 + BSR/Beta Satellite Satellite 196 330 -49 583 291 11 27 chrY 22307289 22307691 -2405388 + BSR/Beta Satellite Satellite 1 395 -1 586 280 7 24 chrY 22307733 22308432 -2404647 + BSR/Beta Satellite Satellite 1 687 -21 374 357 14 0 chrY 22308517 22308686 -2404393 + BSR/Beta Satellite Satellite 1 171 -6 1339 269 23 10 chrY 22308759 22310476 -2402603 + BSR/Beta Satellite Satellite 1 1739 -12 679 263 17 30 chrY 22310595 22311937 -2401142 + BSR/Beta Satellite Satellite 1 1325 0 325 303 41 33 chrY 22312163 22312370 -2400709 + BSR/Beta Satellite Satellite 1 208 -7 1216 273 20 24 chrY 22312383 22313675 -2399404 + BSR/Beta Satellite Satellite 1 1286 -13 1025 299 13 2 chrY 22313691 22314154 -2398925 + BSR/Beta Satellite Satellite 1 468 -35 597 248 13 0 chrY 22314195 22314357 -2398722 + BSR/Beta Satellite Satellite 1 164 -46 569 259 11 41 chrY 22314370 22315050 -2398029 + BSR/Beta Satellite Satellite 1 659 -5 1105 265 24 21 chrY 22315085 22315413 -2397666 + BSR/Beta Satellite Satellite 35 363 -16 585 319 0 2 chrY 22315471 22315782 -2397297 + BSR/Beta Satellite Satellite 1 310 -47 561 265 20 21 chrY 22315843 22316901 -2396178 + BSR/Beta Satellite Satellite 1 1056 -7 1360 281 9 12 chrY 22316996 22317578 -2395501 + BSR/Beta Satellite Satellite 1 580 -45 294 321 28 0 chrY 22317768 22317877 -2395202 + BSR/Beta Satellite Satellite 37 148 -4 548 279 4 34 chrY 22317894 22318458 -2394621 + BSR/Beta Satellite Satellite 1 547 -2 368 331 23 0 chrY 22318666 22318799 -2394280 + BSR/Beta Satellite Satellite 2 137 -15 720 271 33 27 chrY 22318833 22319779 -2393300 + BSR/Beta Satellite Satellite 1 951 -49 1040 312 16 4 chrY 22319796 22320455 -2392624 + BSR/Beta Satellite Satellite 1 666 -49 503 273 13 22 chrY 22320471 22321293 -2391786 + BSR/Beta Satellite Satellite 1 814 -3 479 303 12 22 chrY 22321304 22321585 -2391494 + BSR/Beta Satellite Satellite 1 278 0 575 324 22 22 chrY 22321675 22321953 -2391126 + BSR/Beta Satellite Satellite 21 298 -81 8230 184 16 14 chrY 22321955 22324559 -2388520 + MER61B-int LTR ERV1 2141 4818 -399 761 49 10 0 chrY 22324561 22324663 -2388416 + (TTTC)n Simple_repeat Simple_repeat 1 103 0 1542 201 18 18 chrY 22324665 22325008 -2388071 + MER61B-int LTR ERV1 4875 5217 0 1976 196 23 44 chrY 22325008 22325442 -2387637 + MER61B LTR ERV1 1 425 0 411 268 45 20 chrY 22325449 22325647 -2387432 - L1M4 LINE L1 -1272 4874 4672 1339 232 4 4 chrY 22325700 22325972 -2387107 + AluJb SINE Alu 14 285 -27 216 86 0 0 chrY 22325999 22326034 -2387045 + (CAAAAA)n Simple_repeat Simple_repeat 3 37 0 2628 188 23 24 chrY 22326127 22326703 -2386376 - LTR22 LTR ERVK -3 577 3 2811 187 69 53 chrY 22326705 22327378 -2385701 - HERVK22 LTR ERVK 0 6837 6176 3423 32 0 0 chrY 22327378 22327785 -2385294 - L1PA3 LINE L1 -1 6154 5748 2811 187 69 53 chrY 22327785 22328062 -2385017 - HERVK22 LTR ERVK -661 6176 2618 4760 194 14 5 chrY 22328145 22329585 -2383494 - HERVK22 LTR ERVK -2665 3807 2027 534 245 58 0 chrY 22329580 22329719 -2383360 - HERVK22 LTR ERVK -4364 2473 2327 * 1859 219 36 0 chrY 22330114 22330507 -2382572 - HERVK22 LTR ERVK -6142 695 289 597 168 10 0 chrY 22330517 22330618 -2382461 - LTR12 LTR ERV1 0 714 613 261 267 11 0 chrY 22330618 22330708 -2382371 - LTR30 LTR ERV1 -79 643 553 1388 141 119 9 chrY 22330709 22331087 -2381992 - LTR12 LTR ERV1 -406 2032 1 5673 116 6 0 chrY 22331087 22331956 -2381123 - HERV9 LTR ERV1 0 8399 7526 282 116 0 0 chrY 22334338 22334381 -2378698 + (TG)n Simple_repeat Simple_repeat 1 43 0 293 264 81 6 chrY 22334773 22334947 -2378132 + L1M4 LINE L1 4415 4601 -1545 2122 202 63 13 chrY 22334988 22335542 -2377537 + L1MC3 LINE L1 7138 7719 -66 3067 29 5 3 chrY 22335594 22335980 -2377099 - L1P2 LINE L1 -398 5757 5371 207 0 0 0 chrY 22336522 22336545 -2376534 + (T)n Simple_repeat Simple_repeat 1 23 0 333 323 116 66 chrY 22338847 22339243 -2373836 - L3 LINE CR1 -45 1532 1117 297 0 0 0 chrY 22341414 22341447 -2371632 + (A)n Simple_repeat Simple_repeat 1 33 0 333 356 44 31 chrY 22341547 22341707 -2371372 - L3 LINE CR1 -299 1278 1117 216 0 0 0 chrY 22342988 22343012 -2370067 + (T)n Simple_repeat Simple_repeat 1 24 0 1199 126 11 11 chrY 22343469 22343651 -2369428 + AluSg/x SINE Alu 109 290 -22 291 231 22 22 chrY 22343654 22343745 -2369334 - L1ME LINE L1 -415 5706 5616 257 108 0 0 chrY 22343782 22343819 -2369260 + tRNA-Asp-GAC tRNA tRNA 1 37 -38 21 0 0 0 chrY 22344270 22344291 -2368788 + AT_rich Low_complexity Low_complexity 1 21 0 630 261 68 10 chrY 22345740 22345947 -2367132 - MER20 DNA MER1_type 0 219 1 201 74 0 0 chrY 22346143 22346170 -2366909 + (TTTTG)n Simple_repeat Simple_repeat 3 29 0 207 0 0 0 chrY 22347370 22347393 -2365686 + (T)n Simple_repeat Simple_repeat 1 23 0 717 145 0 58 chrY 22397783 22397921 -2315158 + FLAM_C SINE Alu 1 130 -3 2238 129 19 19 chrY 22397928 22398292 -2314787 + THE1B LTR MaLR 1 364 0 529 270 176 36 chrY 22398382 22398604 -2314475 - MIR SINE MIR -9 253 1 211 310 43 35 chrY 22398808 22398924 -2314155 - MIR3 SINE MIR -77 131 15 564 100 210 30 chrY 22399378 22399478 -2313601 + AluJo SINE Alu 3 120 -192 441 158 0 0 chrY 22399486 22399568 -2313511 + GA-rich Low_complexity Low_complexity 3 84 0 306 252 92 34 chrY 22399583 22399702 -2313377 + L2 LINE L2 3147 3272 0 1024 136 65 5 chrY 22400115 22400299 -2312780 + MER3 DNA MER1_type 14 208 -1 549 248 45 13 chrY 22401156 22401313 -2311766 - MIR SINE MIR -79 183 22 344 312 77 66 chrY 22402001 22402469 -2310610 + L1M4 LINE L1 3676 4148 -1998 297 0 0 0 chrY 22402480 22402513 -2310566 + (CA)n Simple_repeat Simple_repeat 2 34 0 323 264 24 22 chrY 22402527 22402652 -2310427 + L1M4 LINE L1 4182 4321 -1825 1487 195 21 0 chrY 22402652 22402939 -2310140 - AluSp SINE Alu -20 293 1 323 264 24 22 chrY 22402939 22403006 -2310073 + L1M4 LINE L1 4321 4386 -1760 22 0 0 0 chrY 22403561 22403583 -2309496 + AT_rich Low_complexity Low_complexity 1 22 0 558 268 114 36 chrY 22404069 22404289 -2308790 + AluJb SINE Alu 44 280 -32 821 61 17 0 chrY 22404289 22404404 -2308675 + (GAAA)n Simple_repeat Simple_repeat 3 119 0 495 295 7 7 chrY 22404696 22404845 -2308234 + AluJo SINE Alu 118 266 -46 2048 245 87 7 chrY 22404883 22405788 -2307291 + L1M4 LINE L1 4416 5393 -753 21 0 0 0 chrY 22406167 22406188 -2306891 + AT_rich Low_complexity Low_complexity 1 21 0 716 193 19 0 chrY 22406814 22406975 -2306104 - L1P4 LINE L1 -669 5499 5336 534 108 0 0 chrY 22406974 22407057 -2306022 + L1P LINE L1 5343 5425 -729 * 14810 142 23 8 chrY 22407066 22410513 -2302566 - L1PA7 LINE L1 -79 6390 2892 5333 189 17 39 chrY 22410515 22411658 -2301421 - L1PA7 LINE L1 -5340 1121 5 573 250 100 20 chrY 22411708 22412223 -2300856 + L1MC/D LINE L1 5017 5559 -748 1300 245 0 26 chrY 22412860 22412988 -2300091 + AluSx SINE Alu 1 131 -181 1559 217 3 10 chrY 22412988 22413302 -2299777 + AluSx SINE Alu 1 312 0 1300 245 0 26 chrY 22413302 22413479 -2299600 + AluSx SINE Alu 131 298 -14 24 32 0 0 chrY 22413576 22413607 -2299472 + AT_rich Low_complexity Low_complexity 1 31 0 34 24 0 0 chrY 22414900 22414941 -2298138 + AT_rich Low_complexity Low_complexity 1 41 0 24 0 0 0 chrY 22415146 22415170 -2297909 + AT_rich Low_complexity Low_complexity 1 24 0 30 27 0 0 chrY 22415194 22415231 -2297848 + AT_rich Low_complexity Low_complexity 1 37 0 1822 167 10 3 chrY 22417737 22418036 -2295043 + AluSp SINE Alu 1 301 -12 444 267 25 17 chrY 22418156 22418276 -2294803 + FLAM_C SINE Alu 2 122 -11 4565 31 0 0 chrY 22418524 22419089 -2293990 + L1PA3 LINE L1 5616 6180 0 286 331 166 6 chrY 22419437 22419600 -2293479 + L3 LINE CR1 194 382 -1195 1718 186 7 0 chrY 22420123 22420397 -2292682 + AluSg1 SINE Alu 12 287 -22 1677 180 7 14 chrY 22420526 22420820 -2292259 + AluSq SINE Alu 1 292 -21 1251 243 36 4 chrY 22420965 22421245 -2291834 - AluJb SINE Alu -23 289 1 399 303 115 59 chrY 22421473 22421777 -2291302 - L2 LINE L2 -11 3261 2941 305 259 76 87 chrY 22423850 22424035 -2289044 + L1MC4 LINE L1 7842 8024 -18 189 0 0 0 chrY 22424071 22424092 -2288987 + (TTTAA)n Simple_repeat Simple_repeat 3 23 0 690 203 0 30 chrY 22424092 22424225 -2288854 - FLAM_C SINE Alu -2 131 3 331 305 93 42 chrY 22424434 22424885 -2288194 + L1MC1 LINE L1 5271 5771 -2037 302 216 235 26 chrY 22425216 22425369 -2287710 - L1MC3 LINE L1 -1504 6281 6097 709 237 37 18 chrY 22425377 22425749 -2287330 - L1M4 LINE L1 -944 5202 4775 2336 131 15 61 chrY 22426321 22426780 -2286299 + LTR22B LTR ERVK 5 442 -50 1037 136 6 0 chrY 22426831 22427008 -2286071 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 1341 251 0 0 chrY 22427016 22427299 -2285780 - AluSx SINE Alu -29 283 1 568 236 130 0 chrY 22427391 22427552 -2285527 - MER3 DNA MER1_type -4 205 24 213 39 0 0 chrY 22427759 22427785 -2285294 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 628 278 33 0 chrY 22429239 22429390 -2283689 + AluSg/x SINE Alu 119 274 -36 1521 209 17 7 chrY 22429502 22429789 -2283290 + AluSx SINE Alu 1 290 -22 1063 226 5 0 chrY 22429879 22430100 -2282979 + L1MC1 LINE L1 6104 6325 -8 19837 108 16 4 chrY 22430674 22433712 -2279367 + L1P LINE L1 12 3087 -3059 606 93 0 0 chrY 22433722 22433808 -2279271 + L1PA5 LINE L1 11 96 -6050 32413 82 8 7 chrY 22433808 22439329 -2273750 + L1PA5 LINE L1 623 6148 -6 585 151 40 0 chrY 22439595 22439721 -2273358 + GA-rich Low_complexity Low_complexity 3 133 0 710 244 85 5 chrY 22441909 22442110 -2270969 - MER20 DNA MER1_type 0 219 3 1213 281 48 20 chrY 22442889 22443344 -2269735 - MLT1D LTR MaLR -17 488 21 1405 198 0 4 chrY 22443683 22443930 -2269149 + AluSx SINE Alu 1 246 -66 425 202 256 24 chrY 22443952 22444120 -2268959 - MER3 DNA MER1_type 0 209 3 191 133 22 0 chrY 22444558 22444603 -2268476 + (CA)n Simple_repeat Simple_repeat 1 46 0 315 283 58 7 chrY 22444887 22445025 -2268054 - MER58B DNA MER1_type -8 333 189 233 276 246 4 chrY 22445384 22445564 -2267515 - MIR SINE MIR -10 252 30 201 39 0 0 chrY 22445728 22445754 -2267325 + (TTG)n Simple_repeat Simple_repeat 2 27 0 734 205 9 105 chrY 22445796 22446006 -2267073 - AluJb SINE Alu -119 193 4 1027 242 106 26 chrY 22448178 22448603 -2264476 - MLT1C LTR MaLR -7 460 2 26 30 0 0 chrY 22448610 22448643 -2264436 + AT_rich Low_complexity Low_complexity 1 33 0 7087 53 0 2 chrY 22449862 22451141 -2261938 - L1PA4 LINE L1 -1 6154 4873 34532 80 3 1 chrY 22451195 22456053 -2257026 - L1PA4 LINE L1 -1276 4870 1 1477 205 8 0 chrY 22456208 22456471 -2256608 - AluSq SINE Alu -37 276 12 286 211 0 0 chrY 22457066 22457118 -2255961 + AluJ/monomer SINE Alu 3 54 -245 2735 10 0 3 chrY 22458671 22458973 -2254106 - AluYa5 SINE Alu -10 301 1 2262 113 3 3 chrY 22461247 22461557 -2251522 - AluY SINE Alu -1 310 1 1781 153 7 17 chrY 22461982 22462276 -2250803 + AluSg SINE Alu 1 291 -19 6915 165 54 13 chrY 22462276 22463699 -2249380 - L1P3 LINE L1 -4633 1828 359 392 184 11 0 chrY 22463701 22463788 -2249291 - LTR19B-int LTR ERV1 -3289 1928 1841 3011 181 33 21 chrY 22463967 22464580 -2248499 - LTR19B-int LTR ERV1 -7099 620 1 1521 194 55 0 chrY 22464580 22464905 -2248174 - LTR19B LTR ERV1 0 580 238 620 183 0 0 chrY 22464898 22465013 -2248066 - LTR19B LTR ERV1 -465 115 1 * 22 0 0 0 chrY 22465803 22465825 -2247254 + AT_rich Low_complexity Low_complexity 1 22 0 522 147 21 0 chrY 22466048 22466143 -2246936 - AluSc SINE Alu -4 305 209 327 300 22 0 chrY 22466147 22466237 -2246842 - L1MC4 LINE L1 -1338 6704 6613 232 196 0 0 chrY 22466238 22466289 -2246790 - L1MC4 LINE L1 -1339 6703 6653 753 184 0 7 chrY 22466289 22466425 -2246654 - AluY SINE Alu -176 135 1 239 333 53 38 chrY 22466444 22466576 -2246503 + MER5B DNA MER1_type 44 177 -1 21 0 0 0 chrY 22467117 22467138 -2245941 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chrY 22467283 22467309 -2245770 + AT_rich Low_complexity Low_complexity 1 26 0 291 54 0 0 chrY 22468614 22468651 -2244428 + (TTA)n Simple_repeat Simple_repeat 3 39 0 1342 162 0 0 chrY 22468666 22468870 -2244209 - AluSg/x SINE Alu -29 280 77 267 230 162 0 chrY 22469592 22469666 -2243413 - L2 LINE L2 -8 3305 3220 21 0 0 0 chrY 22469914 22469935 -2243144 + AT_rich Low_complexity Low_complexity 1 21 0 486 282 0 47 chrY 22470386 22470535 -2242544 + FRAM SINE Alu 1 141 -35 203 374 128 5 chrY 22470648 22470867 -2242212 + MIR SINE MIR 17 262 0 1077 147 0 0 chrY 22471233 22471390 -2241689 + U1 snRNA snRNA 3 159 -6 27 0 0 0 chrY 22472080 22472107 -2240972 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chrY 22472281 22472302 -2240777 + AT_rich Low_complexity Low_complexity 1 21 0 873 148 0 22 chrY 22472574 22472757 -2240322 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 201 39 0 0 chrY 22472784 22472810 -2240269 + (TTCC)n Simple_repeat Simple_repeat 1 26 0 1540 200 10 7 chrY 22472810 22473105 -2239974 - AluSg SINE Alu -14 296 1 25 31 0 0 chrY 22473697 22473729 -2239350 + AT_rich Low_complexity Low_complexity 1 32 0 767 297 126 34 chrY 22473734 22474236 -2238843 - MER4B-int LTR ERV1 -1011 3180 2633 676 34 0 13 chrY 22474414 22474518 -2238561 - L1PA2 LINE L1 -273 5881 5782 2526 14 0 0 chrY 22474518 22474845 -2238234 + L1PA2 LINE L1 5866 6192 0 302 207 17 0 chrY 22474922 22474980 -2238099 - MER4B-int LTR ERV1 -1547 5211 5153 1090 265 20 36 chrY 22475553 22475998 -2237081 - L1MA4 LINE L1 -1 6299 5862 23 33 0 0 chrY 22476392 22476422 -2236657 + AT_rich Low_complexity Low_complexity 1 30 0 210 37 0 0 chrY 22477979 22478006 -2235073 + (CA)n Simple_repeat Simple_repeat 2 28 0 21 0 0 0 chrY 22479079 22479100 -2233979 + AT_rich Low_complexity Low_complexity 1 21 0 6505 56 1 0 chrY 22479100 22479916 -2233163 - L1PA3 LINE L1 -3 6152 5336 * 15979 44 1 0 chrY 22479914 22481896 -2231183 + L1PA3 LINE L1 3358 5341 -805 826 171 48 88 chrY 22482089 22482317 -2230762 + AluSg SINE Alu 64 282 -28 21 36 0 0 chrY 22482337 22482365 -2230714 + AT_rich Low_complexity Low_complexity 1 28 0 188 227 23 0 chrY 22482415 22482459 -2230620 - L2 LINE L2 -78 3235 3191 433 305 29 0 chrY 22482729 22482903 -2230176 + L1MB7 LINE L1 5985 6163 -21 637 328 106 11 chrY 22482935 22483386 -2229693 - L2 LINE L2 -658 2656 2163 1114 227 54 4 chrY 22483438 22483716 -2229363 + AluJb SINE Alu 1 292 -10 21 36 0 0 chrY 22483733 22483761 -2229318 + AT_rich Low_complexity Low_complexity 1 28 0 1664 167 11 0 chrY 22486881 22487150 -2225929 - AluSg SINE Alu -38 272 1 1348 188 9 0 chrY 22487214 22487438 -2225641 + AluSq SINE Alu 1 226 -87 350 85 17 0 chrY 22487460 22487519 -2225560 + (TAGA)n Simple_repeat Simple_repeat 2 61 0 219 36 0 0 chrY 22487554 22487582 -2225497 + (CA)n Simple_repeat Simple_repeat 1 28 0 598 249 100 20 chrY 22487583 22487933 -2225146 - L1 LINE L1 -768 6797 6420 422 304 80 0 chrY 22487964 22488102 -2224977 - FAM SINE Alu -29 156 8 3461 216 82 41 chrY 22488109 22489281 -2223798 - L1 LINE L1 -1140 6425 5206 6788 129 7 18 chrY 22489281 22490364 -2222715 - MER11C LTR ERVK 0 1071 1 730 90 10 0 chrY 22490364 22490464 -2222615 - HERVK11 LTR ERVK 0 7953 7853 5834 86 18 0 chrY 22490464 22491246 -2221833 - HERVK11 LTR ERVK -201 7752 6957 4701 96 14 0 chrY 22491233 22491877 -2221202 - HERVK11 LTR ERVK -1188 6765 6113 * 681 226 79 94 chrY 22491877 22492217 -2220862 - L1 LINE L1 -2355 5210 4876 1465 238 119 20 chrY 22492242 22492855 -2220224 - L1 LINE L1 -2998 4567 3894 919 281 94 43 chrY 22492893 22493107 -2219972 - L1 LINE L1 -4815 2750 2548 1462 227 3 7 chrY 22493107 22493426 -2219653 - AluSq SINE Alu 0 313 1 919 281 94 43 chrY 22493426 22493957 -2219122 - L1 LINE L1 -5017 2548 1967 475 285 224 0 chrY 22494366 22494531 -2218548 - AluSp SINE Alu -111 202 1 197 358 22 56 chrY 22495015 22495194 -2217885 + L2 LINE L2 2460 2632 -682 22 70 0 0 chrY 22495469 22495512 -2217567 + AT_rich Low_complexity Low_complexity 1 43 0 934 203 0 6 chrY 22496957 22497139 -2215940 - L1M2 LINE L1 -753 5559 5379 740 217 21 0 chrY 22497146 22497289 -2215790 + AluSg/x SINE Alu 128 273 -39 333 102 0 0 chrY 22497299 22497358 -2215721 + (CAAT)n Simple_repeat Simple_repeat 2 60 0 821 200 57 54 chrY 22497372 22497444 -2215635 - L1M2 LINE L1 -769 5377 5307 234 0 0 0 chrY 22497444 22497470 -2215609 + (TTG)n Simple_repeat Simple_repeat 2 27 0 821 200 57 54 chrY 22497470 22497677 -2215402 - L1M2 LINE L1 -839 5307 5097 * 1695 199 10 34 chrY 22497674 22498061 -2215018 + L1MA7 LINE L1 5575 5952 -339 570 301 0 0 chrY 22498076 22498222 -2214857 + FRAM SINE Alu 1 146 -30 919 211 49 84 chrY 22498247 22498420 -2214659 + L1MA7 LINE L1 5958 6115 -176 1590 193 7 0 chrY 22498420 22498705 -2214374 + AluSq SINE Alu 4 290 -23 919 211 49 84 chrY 22498705 22498877 -2214202 + L1MA7 LINE L1 6115 6291 0 25 31 0 0 chrY 22498877 22498909 -2214170 + AT_rich Low_complexity Low_complexity 1 32 0 22 35 0 0 chrY 22499313 22499342 -2213737 + AT_rich Low_complexity Low_complexity 1 29 0 1261 211 17 0 chrY 22499357 22499594 -2213485 - AluSx SINE Alu -71 241 1 235 280 0 0 chrY 22500006 22500056 -2213023 + polypyrimidine Low_complexity Low_complexity 3 52 0 794 221 42 21 chrY 22500056 22500246 -2212833 - AluJo SINE Alu 0 312 119 45 75 0 0 chrY 22501110 22501204 -2211875 + AT_rich Low_complexity Low_complexity 1 94 0 40767 53 26 1 chrY 22501726 22507712 -2205367 - L1PA3 LINE L1 -8 6147 13 1643 190 3 0 chrY 22507796 22508080 -2204999 + AluSx SINE Alu 3 287 -25 342 294 102 61 chrY 22508299 22508544 -2204535 + L1M4 LINE L1 349 603 -5939 390 210 110 20 chrY 22508580 22508680 -2204399 - AluJb SINE Alu -20 282 174 752 263 49 15 chrY 22508687 22508892 -2204187 - AluJb SINE Alu -98 214 3 216 179 0 0 chrY 22509035 22509074 -2204005 + T-rich Low_complexity Low_complexity 2 40 0 1526 293 51 28 chrY 22509092 22510283 -2202796 + L1M4 LINE L1 858 2153 -4493 768 253 145 8 chrY 22510284 22510525 -2202554 + AluJo SINE Alu 11 284 -28 21 57 0 0 chrY 22510711 22510746 -2202333 + AT_rich Low_complexity Low_complexity 1 35 0 31967 134 8 18 chrY 22510754 22516634 -2196445 - L1PA6 LINE L1 -326 5828 11 394 121 0 0 chrY 22516671 22516737 -2196342 - Alu SINE Alu 0 302 237 4382 99 2 0 chrY 22516984 22517570 -2195509 - LTR14C LTR ERVK 0 587 1 240 288 181 54 chrY 22518452 22518657 -2194422 + MIR SINE MIR 31 261 -1 23 33 0 0 chrY 22519531 22519561 -2193518 + AT_rich Low_complexity Low_complexity 1 30 0 442 44 0 77 chrY 22519978 22520069 -2193010 + (TTAAA)n Simple_repeat Simple_repeat 3 86 0 229 305 12 12 chrY 22520119 22520201 -2192878 - HAL1 LINE L1 -598 1909 1828 666 236 59 72 chrY 22521461 22521870 -2191209 - L1ME1 LINE L1 -179 5987 5584 1950 235 61 63 chrY 22522655 22523390 -2189689 + MER50 LTR ERV1 1 734 0 2384 236 49 10 chrY 22523559 22524482 -2188597 - L1MB5 LINE L1 -136 6038 5083 690 176 60 55 chrY 22524494 22524676 -2188403 + L1MB3 LINE L1 5371 5553 -621 554 162 9 0 chrY 22524676 22524781 -2188298 + L1MB3 LINE L1 6068 6173 -10 1763 174 3 10 chrY 22524892 22525196 -2187883 - AluY SINE Alu -9 302 1 306 269 46 15 chrY 22525323 22525453 -2187626 - L1MC3 LINE L1 -1767 6018 5885 1713 148 33 33 chrY 22525651 22525983 -2187096 - LTR22B LTR ERVK -34 458 127 378 107 0 0 chrY 22525980 22526036 -2187043 + AluY SINE Alu 80 135 -166 * 654 209 0 39 chrY 22526036 22526215 -2186864 + AluJo/FRAM SINE Alu 137 309 0 1374 216 9 23 chrY 22526215 22526563 -2186516 + L1P LINE L1 2011 2353 -3793 5525 116 35 3 chrY 22526578 22527880 -2185199 + L1PA8 LINE L1 4826 6166 -6 328 212 99 13 chrY 22528400 22528573 -2184506 - L1MC3 LINE L1 -765 5381 5197 1085 73 0 0 chrY 22528575 22528711 -2184368 - AluY SINE Alu -10 301 166 1394 212 0 18 chrY 22528711 22528994 -2184085 - AluSx SINE Alu -30 282 5 320 293 132 22 chrY 22529006 22529415 -2183664 - L1MC3 LINE L1 -965 5181 4728 918 231 107 12 chrY 22529578 22529820 -2183259 - AluJo SINE Alu -47 265 1 270 296 24 29 chrY 22529822 22530028 -2183051 - L1MC3 LINE L1 -1637 4509 4305 2128 160 26 91 chrY 22531078 22531665 -2181414 - MER4B LTR ERV1 -25 754 28 284 250 42 0 chrY 22531700 22531796 -2181283 - MER31-int LTR ERV1 -1316 3620 3521 1050 229 97 8 chrY 22532069 22532336 -2180743 - AluJo SINE Alu -3 309 19 6264 30 0 0 chrY 22532613 22533346 -2179733 - L1PA3 LINE L1 0 6155 5423 670 315 54 14 chrY 22533994 22534566 -2178513 - L1M4 LINE L1 -1747 4399 3805 333 210 18 18 chrY 22534882 22535049 -2178030 + (TTAGGG)n Simple_repeat Simple_repeat 6 172 0 345 168 0 48 chrY 22535112 22535279 -2177800 + (TTAGGG)n Simple_repeat Simple_repeat 6 164 0 420 232 15 36 chrY 22535566 22535996 -2177083 + (TTAGGG)n Simple_repeat Simple_repeat 1 420 0 189 235 0 29 chrY 22536154 22536290 -2176789 + (TTAGGG)n Simple_repeat Simple_repeat 5 136 0 326 187 8 22 chrY 22536374 22536508 -2176571 + (TTAGGG)n Simple_repeat Simple_repeat 1 132 0 384 225 0 36 chrY 22536599 22536962 -2176117 + (TTAGGG)n Simple_repeat Simple_repeat 1 349 0 241 208 0 52 chrY 22537106 22537183 -2175896 + (TTAGGG)n Simple_repeat Simple_repeat 3 75 0 189 189 0 49 chrY 22537199 22537321 -2175758 + (TTAGGG)n Simple_repeat Simple_repeat 5 120 0 367 298 11 17 chrY 22537410 22537588 -2175491 + (TTAGGG)n Simple_repeat Simple_repeat 4 180 0 311 161 0 12 chrY 22537617 22537698 -2175381 + (TTAGGG)n Simple_repeat Simple_repeat 5 84 0 327 311 0 28 chrY 22538007 22538187 -2174892 + (TTAGGG)n Simple_repeat Simple_repeat 1 175 0 2071 241 67 22 chrY 22539296 22540013 -2173066 + L1MB5 LINE L1 5416 6164 -10 978 218 23 5 chrY 22540183 22540403 -2172676 - MER50 LTR ERV1 0 734 511 392 258 60 6 chrY 22540416 22540583 -2172496 - L1M4 LINE L1 -904 5242 5067 * 498 234 65 27 chrY 22540567 22540751 -2172328 + L1M4 LINE L1 5363 5553 -631 542 130 60 0 chrY 22540751 22540851 -2172228 + L1MB3 LINE L1 6068 6173 -10 1229 266 57 33 chrY 22541086 22541687 -2171392 - L1MC3 LINE L1 -1797 5988 5374 1559 188 13 7 chrY 22542457 22542766 -2170313 - AluSx SINE Alu -1 311 1 259 224 241 0 chrY 22543103 22543219 -2169860 - L1MC3 LINE L1 -947 5397 5254 801 215 9 68 chrY 22543305 22543524 -2169555 - AluSg/x SINE Alu 0 312 107 1621 184 76 45 chrY 22543530 22543949 -2169130 - LTR3b LTR ERVK -5 432 1 10716 222 14 23 chrY 22543955 22548217 -2164862 - HERVK3 LTR ERVK -6 7237 2912 1727 285 16 46 chrY 22548324 22549133 -2163946 - HUERS-P3 LTR ERV1 -4580 2416 1605 37114 201 34 32 chrY 22549149 22555904 -2157175 + HERVS71 LTR ERV1 330 7101 -1877 219 36 0 0 chrY 22555904 22555932 -2157147 + (TTA)n Simple_repeat Simple_repeat 1 28 0 37114 201 34 32 chrY 22555932 22557744 -2155335 + HERVS71 LTR ERV1 7101 8909 -69 3480 140 11 11 chrY 22557744 22558308 -2154771 + LTR6A LTR ERV1 1 564 0 394 218 0 11 chrY 22558310 22558397 -2154682 - HUERS-P3 LTR ERV1 -7135 1784 1699 338 194 0 0 chrY 22558490 22558562 -2154517 + LTR25 LTR ERV1 220 291 -503 270 0 0 0 chrY 22558771 22558801 -2154278 + (TAA)n Simple_repeat Simple_repeat 2 31 0 444 275 46 96 chrY 22558954 22559194 -2153885 - LTR25 LTR ERV1 -320 474 247 239 250 14 0 chrY 22559222 22559294 -2153785 - LTR25 LTR ERV1 -503 291 219 2755 332 39 22 chrY 22559387 22560719 -2152360 + HUERS-P3 LTR ERV1 1699 3053 -5866 588 269 67 82 chrY 22560754 22561278 -2151801 - LTR25 LTR ERV1 -10 784 269 363 153 14 14 chrY 22561320 22561392 -2151687 - LTR25 LTR ERV1 -501 293 222 1890 277 18 20 chrY 22561518 22562446 -2150633 - HUERS-P3 LTR ERV1 -23 6973 3328 2739 293 14 21 chrY 22562451 22563384 -2149695 - HUERS-P3 LTR ERV1 -5305 3614 2689 1904 267 142 14 chrY 22563384 22564088 -2148991 + LTR25 LTR ERV1 1 794 0 3397 286 45 34 chrY 22564182 22567054 -2146025 + LTR25-int LTR ERV1 228 3125 -4273 186 71 0 0 chrY 22567054 22567082 -2145997 + (CAA)n Simple_repeat Simple_repeat 2 29 0 3397 286 45 34 chrY 22567082 22567140 -2145939 + LTR25-int LTR ERV1 3125 3181 -4217 1867 212 28 26 chrY 22567146 22567609 -2145470 + LTR25 LTR ERV1 1 464 -330 713 284 94 51 chrY 22567651 22568024 -2145055 + LTR25 LTR ERV1 406 794 0 204 40 0 0 chrY 22568105 22568130 -2144949 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 4778 246 71 52 chrY 22568139 22569217 -2143862 + LTR25-int LTR ERV1 1041 2098 -4898 1659 161 12 62 chrY 22569217 22569539 -2143540 - AluSc SINE Alu -3 306 1 4778 246 71 52 chrY 22569539 22571544 -2141535 + LTR25-int LTR ERV1 2098 4065 -2931 207 0 0 0 chrY 22571544 22571567 -2141512 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4778 246 71 52 chrY 22571567 22572494 -2140585 + LTR25-int LTR ERV1 4065 6996 0 2291 249 35 78 chrY 22572496 22573324 -2139755 + LTR25 LTR ERV1 3 794 0 740 322 8 0 chrY 22573342 22573578 -2139501 - HUERS-P3 LTR ERV1 -6228 2691 2454 261 0 0 0 chrY 22573586 22573615 -2139464 + (TC)n Simple_repeat Simple_repeat 2 30 0 495 244 0 9 chrY 22573615 22573953 -2139126 + (TA)n Simple_repeat Simple_repeat 1 334 0 305 168 10 129 chrY 22573962 22574063 -2139016 + L1MC4 LINE L1 6614 6702 -1340 * 317 247 0 45 chrY 22574048 22574137 -2138942 + L1MC4 LINE L1 6614 6698 -1344 5873 289 38 36 chrY 22574235 22576578 -2136501 - HUERS-P3 LTR ERV1 -4605 2391 45 1625 176 14 10 chrY 22576588 22576878 -2136201 - AluY SINE Alu -16 295 5 475 213 107 0 chrY 22576940 22577062 -2136017 - MER61E LTR ERV1 -4 565 431 600 269 107 29 chrY 22577147 22577491 -2135588 - LTR25 LTR ERV1 -239 555 248 1645 350 23 16 chrY 22577683 22578414 -2134665 + HUERS-P3 LTR ERV1 1695 2430 -6489 1590 335 8 0 chrY 22578428 22578896 -2134183 + MER52A LTR ERV1 1279 1750 -5 609 285 7 0 chrY 22578895 22579039 -2134040 + MER21B LTR ERV1 232 376 -487 * 21 71 0 0 chrY 22579404 22579446 -2133633 + AT_rich Low_complexity Low_complexity 1 42 0 1817 111 0 12 chrY 22580004 22580256 -2132823 - AluY SINE Alu -62 249 1 646 238 48 19 chrY 22582135 22582345 -2130734 - L1M4c LINE L1 -4159 2225 2010 5520 159 29 32 chrY 22582350 22582857 -2130222 + MER11C LTR ERVK 1 508 -563 309 26 0 0 chrY 22582857 22582895 -2130184 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 5520 159 29 32 chrY 22582895 22583461 -2129618 + MER11C LTR ERVK 508 1071 0 21 0 0 0 chrY 22583468 22583489 -2129590 + AT_rich Low_complexity Low_complexity 1 21 0 856 204 71 104 chrY 22583528 22584018 -2129061 - L1M4c LINE L1 -4697 1687 1214 1181 267 58 3 chrY 22584161 22584521 -2128558 - LTR25 LTR ERV1 0 794 415 297 212 76 0 chrY 22584510 22584576 -2128503 - LTR25 LTR ERV1 -253 541 471 * 1276 289 59 17 chrY 22584562 22585036 -2128043 - LTR25 LTR ERV1 -52 742 249 435 306 143 0 chrY 22585524 22585719 -2127360 + MER21B LTR ERV1 19 241 -622 536 311 12 37 chrY 22585719 22586024 -2127055 + MER52A LTR ERV1 1 383 -1372 563 262 18 22 chrY 22586056 22586232 -2126847 + MER21B LTR ERV1 247 379 -484 766 227 31 31 chrY 22587457 22587686 -2125393 - L1M4c LINE L1 -4204 2180 1952 2243 271 118 62 chrY 22587753 22588841 -2124238 - L1M4c LINE L1 -4611 1773 747 244 61 20 0 chrY 22588841 22588890 -2124189 - LTR66 LTR ERVL -172 438 389 2243 271 118 62 chrY 22588890 22588901 -2124178 - L1M4c LINE L1 -5637 747 738 195 69 0 0 chrY 22588901 22588930 -2124149 + (TG)n Simple_repeat Simple_repeat 2 30 0 2243 271 118 62 chrY 22588930 22589440 -2123639 - L1M4c LINE L1 -5646 738 23 551 323 117 15 chrY 22589946 22590621 -2122458 - L1M4c LINE L1 -4660 1724 981 22 70 0 0 chrY 22591798 22591841 -2121238 + AT_rich Low_complexity Low_complexity 1 43 0 26 30 0 0 chrY 22591925 22591958 -2121121 + AT_rich Low_complexity Low_complexity 1 33 0 216 381 52 15 chrY 22591963 22592097 -2120982 - L2 LINE L2 -352 2961 2823 253 297 0 0 chrY 22592193 22592257 -2120822 + MER20 DNA MER1_type 83 146 -73 270 237 0 0 chrY 22594048 22594124 -2118955 + (TA)n Simple_repeat Simple_repeat 1 76 0 1562 185 61 15 chrY 22594138 22594467 -2118612 - MLT2A1 LTR ERVL -98 346 3 1606 152 19 0 chrY 22594468 22594778 -2118301 - HERVL-A1 LTR ERVL 0 5654 5339 16831 184 28 5 chrY 22594786 22596958 -2116121 - HERVL-A1 LTR ERVL -2513 3141 876 324 48 0 0 chrY 22596958 22597000 -2116079 + (TG)n Simple_repeat Simple_repeat 1 42 0 16831 184 28 5 chrY 22597000 22597897 -2115182 - HERVL-A1 LTR ERVL -4778 876 1 1938 199 24 8 chrY 22597932 22598314 -2114765 - MLT2A1 LTR ERVL -56 388 1 895 285 100 16 chrY 22598348 22598717 -2114362 + MER52A LTR ERV1 702 1097 -658 3730 275 11 12 chrY 22598717 22599639 -2113440 + MER52A LTR ERV1 895 1753 -2 395 299 18 24 chrY 22599921 22600085 -2112994 - MER20 DNA MER1_type 0 219 57 1228 252 6 19 chrY 22600256 22600581 -2112498 + L1P4 LINE L1 5388 5708 -460 * 15246 160 21 28 chrY 22600578 22603117 -2109962 - L1PA8 LINE L1 -344 6143 3383 1213 250 0 48 chrY 22603117 22603433 -2109646 - AluSx SINE Alu -1 301 1 15246 160 21 28 chrY 22603433 22605082 -2107997 - L1PA8 LINE L1 -3104 3383 1723 1087 122 16 43 chrY 22605082 22605270 -2107809 - LTR5 LTR ERVK 0 969 787 2948 168 8 2 chrY 22605300 22605807 -2107272 - LTR5 LTR ERVK -459 510 1 2450 200 36 2 chrY 22605816 22607448 -2105631 - L1PA8 LINE L1 -4734 1727 6 2435 117 63 36 chrY 22607821 22608267 -2104812 + LTR22B LTR ERVK 1 458 -34 368 227 65 40 chrY 22608432 22608585 -2104494 + L1MC3 LINE L1 5860 6018 -174 1829 165 0 3 chrY 22608712 22609015 -2104064 + AluY SINE Alu 1 302 -9 514 202 0 0 chrY 22609102 22609206 -2103873 - L1MB3 LINE L1 -12 6171 6068 620 204 61 50 chrY 22609206 22609387 -2103692 - L1MB3 LINE L1 -631 5553 5371 270 274 42 0 chrY 22609383 22609478 -2103601 + L1M4 LINE L1 5067 5165 -981 * 3405 109 198 72 chrY 22610849 22611583 -2101496 - LTR12 LTR ERV1 0 826 1 264 332 158 5 chrY 22611926 22612116 -2100963 - MIR SINE MIR 0 262 44 3957 132 0 0 chrY 22612948 22613533 -2099546 + LTR14C LTR ERVK 3 587 0 1891 153 3 0 chrY 22613872 22614160 -2098919 + AluY SINE Alu 1 289 -22 31139 137 20 12 chrY 22614202 22620320 -2092759 + L1PA6 LINE L1 11 6165 0 256 280 19 19 chrY 22620327 22620434 -2092645 - L1MA9 LINE L1 -38 6274 6168 863 255 34 0 chrY 22620434 22620638 -2092441 + MSTB1 LTR MaLR 1 211 -221 2103 251 77 17 chrY 22620652 22622849 -2090230 - L1MB1 LINE L1 -269 6102 3639 891 260 40 32 chrY 22622881 22623334 -2089745 - L1MB1 LINE L1 -2953 3375 2924 1064 252 37 66 chrY 22623420 22624074 -2089005 - L1MB1 LINE L1 -3606 2722 2088 3484 253 48 49 chrY 22624180 22624561 -2088518 - L1MB1 LINE L1 -4065 1263 883 1583 217 0 3 chrY 22624561 22624874 -2088205 - AluSx SINE Alu 0 312 1 3484 253 48 49 chrY 22624874 22626031 -2087048 - L1MB1 LINE L1 -4445 883 16 287 300 55 29 chrY 22626014 22626287 -2086792 - L1M4 LINE L1 -3011 3633 3354 * 234 263 75 0 chrY 22626348 22626428 -2086651 - L1M4 LINE L1 -3645 2999 2914 304 309 64 16 chrY 22626518 22626832 -2086247 - L1M4 LINE L1 -3951 2695 2367 836 255 127 4 chrY 22626942 22627209 -2085870 - AluJo SINE Alu -5 307 8 6927 59 20 0 chrY 22627320 22628566 -2084513 - L1PA4 LINE L1 -8 6147 4891 1893 75 6 3 chrY 22628591 22631238 -2081841 - L1PA4 LINE L1 -3359 2787 1 1275 279 92 27 chrY 22631248 22632363 -2080716 - L1M4 LINE L1 -4566 2080 858 213 146 24 0 chrY 22632394 22632435 -2080644 + A-rich Low_complexity Low_complexity 4 45 0 647 279 45 25 chrY 22632582 22632783 -2080296 + AluJo SINE Alu 5 209 -103 344 271 56 9 chrY 22632793 22632900 -2080179 + AluJb SINE Alu 171 282 -20 237 306 155 42 chrY 22632974 22633399 -2079680 - L1M4 LINE L1 -5974 568 96 1842 167 0 0 chrY 22633763 22634050 -2079029 - AluSx SINE Alu -23 289 3 6906 29 2 1 chrY 22634204 22635036 -2078043 - L1P LINE L1 -1634 4512 3680 7599 25 2 0 chrY 22635039 22636494 -2076585 + L1PA2 LINE L1 4697 6153 -2 48 67 0 0 chrY 22636953 22637043 -2076036 + AT_rich Low_complexity Low_complexity 1 90 0 580 241 36 0 chrY 22637882 22638019 -2075060 + FRAM SINE Alu 22 163 -13 209 160 0 40 chrY 22638024 22638074 -2075005 + GA-rich Low_complexity Low_complexity 5 52 0 1452 174 106 0 chrY 22638487 22638769 -2074310 + AluSx SINE Alu 1 312 0 1065 164 64 95 chrY 22639236 22639409 -2073670 - L1MA7 LINE L1 0 6291 6132 1488 215 11 0 chrY 22639409 22639693 -2073386 - AluSq SINE Alu -23 290 4 1065 164 64 95 chrY 22639693 22639877 -2073202 - L1MA7 LINE L1 -159 6132 5944 491 267 82 0 chrY 22639883 22640018 -2073061 - FRAM SINE Alu -30 146 1 1598 219 11 19 chrY 22640019 22640394 -2072685 - L1MA7 LINE L1 -325 5966 5595 1018 184 10 54 chrY 22640418 22640712 -2072367 + L1M2 LINE L1 5097 5377 -769 581 255 33 0 chrY 22640743 22640896 -2072183 - AluSg/x SINE Alu -27 285 128 940 188 6 6 chrY 22640903 22641084 -2071995 + L1M2 LINE L1 5379 5559 -732 625 244 165 0 chrY 22643553 22643729 -2069350 + AluJb SINE Alu 1 205 -107 1148 246 90 4 chrY 22643898 22644175 -2068904 - AluSx SINE Alu -1 301 1 22 35 0 0 chrY 22644296 22644325 -2068754 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chrY 22645707 22645742 -2067337 + AT_rich Low_complexity Low_complexity 1 35 0 314 138 17 0 chrY 22646078 22646136 -2066943 + (TA)n Simple_repeat Simple_repeat 2 60 0 928 309 84 32 chrY 22647796 22648330 -2064749 + L1M1 LINE L1 1967 2553 -5012 1262 217 3 62 chrY 22648330 22648639 -2064440 + AluSq SINE Alu 1 291 -22 928 309 84 32 chrY 22648639 22648852 -2064227 + L1M1 LINE L1 2553 2753 -4812 1398 254 125 16 chrY 22648889 22649467 -2063612 + L1M1 LINE L1 3894 4534 -3031 4589 215 71 48 chrY 22649534 22651044 -2062035 + L1M1 LINE L1 4876 6420 -1145 505 264 35 21 chrY 22651044 22651188 -2061891 + FRAM SINE Alu 1 139 -37 678 239 73 30 chrY 22651225 22651594 -2061485 + L1M1 LINE L1 6420 6804 -761 291 85 0 0 chrY 22651615 22651662 -2061417 + (TG)n Simple_repeat Simple_repeat 2 48 0 1303 196 4 0 chrY 22651699 22651924 -2061155 - AluSx SINE Alu -86 226 1 25 95 0 0 chrY 22651924 22651998 -2061081 + AT_rich Low_complexity Low_complexity 1 74 0 1483 161 8 0 chrY 22652039 22652281 -2060798 + AluSg SINE Alu 40 283 -27 201 39 0 0 chrY 22653946 22653972 -2059107 + (TG)n Simple_repeat Simple_repeat 1 26 0 237 305 37 0 chrY 22655253 22655335 -2057744 + L2 LINE L2 1844 1928 -1386 1114 219 60 4 chrY 22655375 22655644 -2057435 - AluJo SINE Alu -18 284 1 675 329 92 19 chrY 22655673 22655876 -2057203 + L2 LINE L2 2140 2327 -987 6812 113 8 23 chrY 22655876 22656963 -2056116 - MER11C LTR ERVK 0 1071 1 675 329 92 19 chrY 22656963 22657236 -2055843 + L2 LINE L2 2327 2651 -663 372 43 0 0 chrY 22657412 22657458 -2055621 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 1098 192 20 82 chrY 22657482 22657774 -2055305 - AluSx SINE Alu -37 275 2 914 241 14 38 chrY 22658351 22658641 -2054438 - L1MB7 LINE L1 -11 6173 5891 311 261 123 22 chrY 22658641 22658779 -2054300 + LTR40b LTR ERVL 59 210 -252 711 280 160 7 chrY 22659002 22659302 -2053777 - L1MB7 LINE L1 -457 5721 5376 1023 163 12 0 chrY 22659330 22659502 -2053577 + AluSq SINE Alu 129 302 -11 3287 216 34 16 chrY 22659720 22660476 -2052603 + L1PA10 LINE L1 5388 6157 -11 1206 238 90 4 chrY 22660652 22660929 -2052150 - AluSx SINE Alu -1 301 1 21 82 0 0 chrY 22661050 22661099 -2051980 + AT_rich Low_complexity Low_complexity 1 49 0 24 0 0 0 chrY 22661770 22661794 -2051285 + AT_rich Low_complexity Low_complexity 1 24 0 212 224 20 0 chrY 22662842 22662891 -2050188 + (TA)n Simple_repeat Simple_repeat 2 51 0 297 0 0 0 chrY 22663422 22663455 -2049624 + (TTA)n Simple_repeat Simple_repeat 1 33 0 1010 266 35 37 chrY 22664903 22665336 -2047743 + L1MA4 LINE L1 5865 6296 -4 872 306 92 68 chrY 22665613 22666714 -2046365 + MER21-int LTR ERV1 2054 3180 -1011 30 0 0 0 chrY 22666719 22666749 -2046330 + AT_rich Low_complexity Low_complexity 1 30 0 1658 167 26 3 chrY 22667350 22667809 -2045270 + AluSq SINE Alu 1 466 0 2823 0 0 0 chrY 22668125 22668431 -2044648 + AluYa5 SINE Alu 1 306 -5 9314 57 15 0 chrY 22668511 22670488 -2042591 - L1PA4 LINE L1 -6 6149 4155 24 0 0 0 chrY 22670993 22671017 -2042062 + AT_rich Low_complexity Low_complexity 1 24 0 230 0 0 32 chrY 22671293 22671324 -2041755 + (TTTTC)n Simple_repeat Simple_repeat 1 30 0 782 190 44 6 chrY 22671324 22671482 -2041597 - U1 snRNA snRNA -1 164 1 232 301 65 65 chrY 22671954 22672107 -2040972 - MIR SINE MIR -17 191 39 550 255 0 45 chrY 22672204 22672361 -2040718 - FRAM SINE Alu -18 158 9 239 236 167 0 chrY 22673066 22673138 -2039941 + L2 LINE L2 3220 3303 -10 21 0 0 0 chrY 22673910 22673931 -2039148 + AT_rich Low_complexity Low_complexity 1 21 0 1193 183 5 0 chrY 22673932 22674129 -2038950 + AluSg/x SINE Alu 77 274 -35 183 42 0 0 chrY 22674131 22674155 -2038924 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 475 43 43 0 chrY 22674611 22674681 -2038398 - L1PA2 LINE L1 -1 6154 6082 303 293 64 71 chrY 22675090 22675387 -2037692 + MER46C DNA MER2_type 27 321 -17 29 60 0 0 chrY 22675519 22675569 -2037510 + AT_rich Low_complexity Low_complexity 1 50 0 22 56 0 0 chrY 22675845 22675881 -2037198 + AT_rich Low_complexity Low_complexity 1 36 0 232 333 9 37 chrY 22676192 22676300 -2036779 - MER5B DNA MER1_type -30 148 44 1436 165 120 0 chrY 22676320 22676587 -2036492 + AluSc SINE Alu 2 300 -9 198 143 0 0 chrY 22676723 22676758 -2036321 + (TA)n Simple_repeat Simple_repeat 1 35 0 22 0 0 0 chrY 22676817 22676839 -2036240 + AT_rich Low_complexity Low_complexity 1 22 0 647 200 0 0 chrY 22677638 22677753 -2035326 + LTR19B LTR ERV1 1 115 -465 * 1760 171 49 3 chrY 22677746 22678074 -2035005 + LTR19B LTR ERV1 238 580 0 2789 184 30 85 chrY 22678074 22678732 -2034347 + HERVFH19I LTR ERV1 1 622 -7097 530 166 103 7 chrY 22678867 22679012 -2034067 + LTR25-int LTR ERV1 4578 4736 -2260 7103 162 48 27 chrY 22679032 22680406 -2032673 + L1P3 LINE L1 377 1807 -4644 420 82 0 0 chrY 22680407 22680468 -2032611 + (TTTG)n Simple_repeat Simple_repeat 4 64 0 1648 181 0 0 chrY 22680468 22680728 -2032351 - AluSg SINE Alu -32 278 19 226 135 0 0 chrY 22681496 22681533 -2031546 + (T)n Simple_repeat Simple_repeat 1 37 0 266 0 29 0 chrY 22681535 22681569 -2031510 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 18550 21 0 0 chrY 22681569 22684532 -2028547 - L1HS LINE L1 0 6155 3193 309 182 0 18 chrY 22688075 22688130 -2024949 - Alu SINE Alu -248 54 1 6747 63 10 6 chrY 22688318 22691049 -2022030 + L1PA4 LINE L1 3278 6144 -11 195 69 0 0 chrY 22691056 22691085 -2021994 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 1376 191 66 0 chrY 22691502 22691758 -2021321 + AluSx SINE Alu 12 284 -28 22 0 0 0 chrY 22692226 22692248 -2020831 + AT_rich Low_complexity Low_complexity 1 22 0 284 111 19 0 chrY 22693164 22693218 -2019861 + (CA)n Simple_repeat Simple_repeat 2 56 0 1122 246 111 24 chrY 22693635 22694057 -2019022 + MLT1C LTR MaLR 2 460 -7 827 205 126 82 chrY 22696138 22696431 -2016648 + AluJb SINE Alu 4 309 -3 207 281 0 31 chrY 22696728 22696792 -2016287 + L2 LINE L2 3251 3312 -1 281 185 15 0 chrY 22698613 22698678 -2014401 + CT-rich Low_complexity Low_complexity 4 69 0 1142 107 6 0 chrY 22698685 22698862 -2014217 + (TTCC)n Simple_repeat Simple_repeat 3 180 0 203 244 0 0 chrY 22699638 22699679 -2013400 + (TG)n Simple_repeat Simple_repeat 2 42 0 1156 220 0 0 chrY 22699682 22699905 -2013174 - L1MC1 LINE L1 -7 6326 6104 1596 196 17 7 chrY 22699992 22700283 -2012796 - AluSx SINE Alu -18 294 1 871 278 32 18 chrY 22700385 22700669 -2012410 - AluSx SINE Alu -14 288 1 599 256 152 0 chrY 22702415 22702579 -2010500 + MER3 DNA MER1_type 17 205 -4 1325 237 0 31 chrY 22702671 22703050 -2010029 + AluSx SINE Alu 1 369 0 559 197 20 0 chrY 22703051 22703198 -2009881 + GA-rich Low_complexity Low_complexity 3 152 0 2592 153 18 40 chrY 22703244 22703740 -2009339 - LTR22B LTR ERVK -3 489 5 842 220 211 14 chrY 22704310 22704665 -2008414 + L1M4 LINE L1 4775 5199 -947 511 181 213 31 chrY 22704674 22704834 -2008245 + L1MC3 LINE L1 6093 6281 -1504 13683 44 0 1 chrY 22704997 22707438 -2005641 - L1PA3 LINE L1 -3 6152 3709 1851 59 0 0 chrY 22707438 22707675 -2005404 + L1PA3 LINE L1 3466 3702 -2444 244 272 134 45 chrY 22707867 22708069 -2005010 - L1MC1 LINE L1 -2037 5771 5552 665 201 0 22 chrY 22708530 22708664 -2004415 + FLAM_C SINE Alu 3 133 0 249 211 96 64 chrY 22708709 22708865 -2004214 - L1MC4 LINE L1 -17 8025 7865 500 321 85 59 chrY 22710961 22711266 -2001813 + L2 LINE L2 2941 3253 -19 1139 253 42 7 chrY 22711478 22711767 -2001312 + AluJb SINE Alu 1 299 -3 1602 203 7 0 chrY 22711913 22712204 -2000875 - AluSq SINE Alu -20 293 1 1324 180 71 4 chrY 22712333 22712588 -2000491 - AluSg1 SINE Alu -8 301 30 280 331 130 27 chrY 22713099 22713283 -1999796 - L3 LINE CR1 -1180 397 195 603 256 0 0 chrY 22713899 22714020 -1999059 - FLAM_A SINE Alu -12 121 1 1950 158 3 0 chrY 22714140 22714437 -1998642 - AluSq SINE Alu -15 298 1 26 50 0 0 chrY 22716937 22716977 -1996102 + AT_rich Low_complexity Low_complexity 1 40 0 22 0 0 0 chrY 22717001 22717023 -1996056 + AT_rich Low_complexity Low_complexity 1 22 0 29 0 0 0 chrY 22717224 22717253 -1995826 + AT_rich Low_complexity Low_complexity 1 29 0 287 286 135 15 chrY 22718211 22718344 -1994735 + MIR SINE MIR 54 202 -60 1274 235 0 20 chrY 22718667 22718840 -1994239 - AluSx SINE Alu -16 296 130 1447 204 10 16 chrY 22718840 22719154 -1993925 - AluSx SINE Alu 0 312 1 1274 235 0 20 chrY 22719154 22719282 -1993797 - AluSx SINE Alu -182 130 1 947 185 0 97 chrY 22719769 22720007 -1993072 - AluSc SINE Alu -94 215 1 267 288 12 25 chrY 22720116 22720196 -1992883 + LTR33 LTR ERVL 75 153 -368 626 254 97 24 chrY 22720625 22721147 -1991932 - L1MC1 LINE L1 -748 5398 5017 1201 184 0 0 chrY 22721196 22721397 -1991682 + L1PA7 LINE L1 5 205 -6256 4467 183 46 7 chrY 22721405 22721545 -1991534 + L1PA7 LINE L1 270 403 -6058 207 0 0 0 chrY 22721545 22721568 -1991511 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4467 183 46 7 chrY 22721568 22722249 -1990830 + L1PA7 LINE L1 403 1123 -5338 * 12286 143 14 3 chrY 22722238 22725715 -1987364 + L1PA7 LINE L1 2883 6395 -74 555 51 64 0 chrY 22725719 22725797 -1987282 - L1P LINE L1 -729 5425 5343 * 4474 159 16 11 chrY 22725796 22726618 -1986461 + L1PA14 LINE L1 5336 6161 0 250 281 126 7 chrY 22726851 22726986 -1986093 + TAR1 Satellite telomeric 1761 1911 -200 236 319 34 17 chrY 22728030 22728149 -1984930 + L2 LINE L2 2687 2807 -507 1429 293 114 11 chrY 22729176 22730045 -1983034 - L1 LINE L1 -753 5393 4436 643 274 6 6 chrY 22730083 22730247 -1982832 - FRAM SINE Alu -12 164 1 180 0 0 0 chrY 22730252 22730272 -1982807 + (TTG)n Simple_repeat Simple_repeat 2 21 0 662 221 95 95 chrY 22730581 22731054 -1982025 - AluJb SINE Alu 0 312 19 22 0 0 0 chrY 22731536 22731558 -1981521 + AT_rich Low_complexity Low_complexity 1 22 0 349 277 114 37 chrY 22732103 22732185 -1980894 - L1 LINE L1 -1738 4408 4334 1306 169 15 105 chrY 22732185 22732517 -1980562 + AluY SINE Alu 1 302 -9 349 277 114 37 chrY 22732517 22732891 -1980188 - L1 LINE L1 -1812 4334 3914 395 164 8 25 chrY 22733348 22733470 -1979609 + (TTAGGG)n Simple_repeat Simple_repeat 6 125 0 410 209 0 62 chrY 22733487 22733664 -1979415 + (TTAGGG)n Simple_repeat Simple_repeat 4 169 0 300 188 0 27 chrY 22733766 22733878 -1979201 + (TTAGGG)n Simple_repeat Simple_repeat 1 109 0 212 247 25 12 chrY 22733891 22733972 -1979107 + (TTAGGG)n Simple_repeat Simple_repeat 4 85 0 416 226 11 63 chrY 22733983 22734173 -1978906 + (TTAGGG)n Simple_repeat Simple_repeat 1 180 0 244 222 0 16 chrY 22734221 22734347 -1978732 + (TTAGGG)n Simple_repeat Simple_repeat 4 127 0 204 224 0 21 chrY 22734475 22734618 -1978461 + (TTAGGG)n Simple_repeat Simple_repeat 5 144 0 226 223 0 33 chrY 22734671 22734855 -1978224 + (TTAGGG)n Simple_repeat Simple_repeat 2 179 0 381 240 0 49 chrY 22734868 22735051 -1978028 + (TTAGGG)n Simple_repeat Simple_repeat 2 175 0 236 280 0 53 chrY 22735085 22735274 -1977805 + (TTAGGG)n Simple_repeat Simple_repeat 2 180 0 181 177 0 32 chrY 22735370 22735432 -1977647 + (TTAGGG)n Simple_repeat Simple_repeat 5 64 0 361 302 6 22 chrY 22735474 22735656 -1977423 + (TTAGGG)n Simple_repeat Simple_repeat 2 180 0 286 200 0 20 chrY 22735688 22735788 -1977291 + (TTAGGG)n Simple_repeat Simple_repeat 5 102 0 226 290 0 51 chrY 22735823 22735999 -1977080 + (TTAGGG)n Simple_repeat Simple_repeat 1 167 0 406 282 10 30 chrY 22736032 22736336 -1976743 + (TTAGGG)n Simple_repeat Simple_repeat 1 297 0 1942 240 44 15 chrY 22736619 22737215 -1975864 + L1MB5 LINE L1 5542 6154 -20 1036 201 32 9 chrY 22737400 22737619 -1975460 - MER50 LTR ERV1 0 734 511 525 251 12 12 chrY 22737627 22737790 -1975289 - L1M4 LINE L1 -901 5245 5083 559 246 60 27 chrY 22737802 22737985 -1975094 + L1M4 LINE L1 5371 5559 -625 336 186 34 93 chrY 22737968 22738086 -1974993 + L1MB3 LINE L1 6061 6171 -12 * 1397 273 58 37 chrY 22738264 22738929 -1974150 - L1MC3 LINE L1 -308 6051 5372 1441 194 19 13 chrY 22739717 22740026 -1973053 - AluSx SINE Alu -1 311 1 841 193 5 66 chrY 22740562 22740775 -1972304 - AluSg/x SINE Alu 0 312 113 2490 152 5 16 chrY 22740778 22741212 -1971867 - LTR3 LTR ERVK 0 429 1 17139 217 52 37 chrY 22741212 22741476 -1971603 - HERVK3 LTR ERVK -1 7242 6984 297 45 0 0 chrY 22741476 22741520 -1971559 + L1PA2 LINE L1 6112 6155 0 17139 217 52 37 chrY 22741520 22745475 -1967604 - HERVK3 LTR ERVK -259 6984 2913 234 222 62 49 chrY 22745566 22745647 -1967432 - L1MC4 LINE L1 -1342 6700 6619 303 294 16 16 chrY 22745648 22745774 -1967305 + (TA)n Simple_repeat Simple_repeat 2 127 0 236 214 0 102 chrY 22745775 22745873 -1967206 - L1MC4 LINE L1 -1340 6702 6615 244 185 37 0 chrY 22745990 22746044 -1967035 - L1MC4 LINE L1 -1340 6702 6647 219 318 0 0 chrY 22746044 22746107 -1966972 + (CATATA)n Simple_repeat Simple_repeat 4 66 0 226 153 34 34 chrY 22746107 22746166 -1966913 + L1MCa LINE L1 2006 2064 -4362 * 238 187 110 55 chrY 22746153 22746244 -1966835 + L1MC4 LINE L1 6614 6709 -1333 282 160 0 0 chrY 22746246 22746296 -1966783 + (TA)n Simple_repeat Simple_repeat 1 50 0 2291 269 35 39 chrY 22746309 22747668 -1965411 - HUERS-P3 LTR ERV1 -5580 1416 24 1309 328 30 24 chrY 22747712 22748347 -1964732 - HUERS-P3 LTR ERV1 -6586 2333 1695 228 263 0 13 chrY 22748430 22748506 -1964573 + LTR25 LTR ERV1 212 286 -508 515 295 74 23 chrY 22748865 22748960 -1964119 - LTR25 LTR ERV1 -320 474 385 1515 22 0 0 chrY 22748960 22749139 -1963940 + (GAA)n Simple_repeat Simple_repeat 2 180 0 515 295 74 23 chrY 22749139 22749260 -1963819 - LTR25 LTR ERV1 -409 385 247 267 231 0 0 chrY 22749297 22749362 -1963717 - LTR25 LTR ERV1 -510 284 220 3486 320 37 19 chrY 22749453 22750788 -1962291 + HUERS-P3 LTR ERV1 1695 3053 -5866 1229 276 92 12 chrY 22750806 22751309 -1961770 - LTR25 LTR ERV1 -2 792 250 323 236 0 0 chrY 22751336 22751408 -1961671 - LTR25 LTR ERV1 -501 293 222 704 303 36 18 chrY 22751529 22751791 -1961288 - HUERS-P1 LTR ERV1 -23 8896 4918 1787 266 29 19 chrY 22751794 22752373 -1960706 - HUERS-P1 LTR ERV1 -1224 3993 3409 3667 195 25 45 chrY 22752378 22753380 -1959699 + MER11C LTR ERVK 1 1071 0 365 213 38 0 chrY 22753380 22753460 -1959619 - HUERS-P1 LTR ERV1 -683 5580 5498 3252 288 12 22 chrY 22753465 22754400 -1958679 - HUERS-P1 LTR ERV1 -5305 3614 2690 2486 233 30 91 chrY 22754401 22755247 -1957832 + LTR25 LTR ERV1 1 794 0 5654 284 54 43 chrY 22755397 22758289 -1954790 + LTR25-int LTR ERV1 279 3125 -4282 387 0 0 0 chrY 22758289 22758332 -1954747 + (CAA)n Simple_repeat Simple_repeat 2 44 0 5654 284 54 43 chrY 22758332 22758399 -1954680 + LTR25-int LTR ERV1 3125 3190 -4217 2438 234 16 110 chrY 22758399 22759275 -1953804 + LTR25 LTR ERV1 1 794 0 5788 264 65 62 chrY 22759363 22760503 -1952576 + HUERS-P3b LTR ERV1 1217 2352 -4644 1571 188 35 3 chrY 22760503 22760790 -1952289 - AluSc SINE Alu -12 297 2 5788 264 65 62 chrY 22760790 22763753 -1949326 + HUERS-P3b LTR ERV1 2352 6996 0 2126 238 66 79 chrY 22763755 22764055 -1949024 + LTR25 LTR ERV1 3 305 -489 216 0 0 0 chrY 22764055 22764079 -1949000 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2126 238 66 79 chrY 22764079 22764580 -1948499 + LTR25 LTR ERV1 305 794 0 6169 279 44 49 chrY 22764600 22767313 -1945766 - LTR25-int LTR ERV1 -4226 2770 90 1421 186 21 24 chrY 22767416 22767707 -1945372 - AluY SINE Alu -21 290 1 891 253 100 93 chrY 22767775 22768313 -1944766 - LTR25 LTR ERV1 0 794 253 241 139 0 0 chrY 22768321 22768357 -1944722 - MER61E LTR ERV1 -414 155 120 1794 270 22 54 chrY 22768520 22769246 -1943833 + LTR25-int LTR ERV1 1846 2548 -4448 1516 350 6 0 chrY 22769257 22769732 -1943347 + MER52A LTR ERV1 1278 1755 0 576 275 8 0 chrY 22769741 22769872 -1943207 + MER21B LTR ERV1 247 378 -485 1353 219 73 67 chrY 22772710 22772987 -1940092 - L1M4c LINE L1 -4159 2225 1951 2007 129 0 0 chrY 22772987 22773301 -1939778 - AluY SINE Alu 0 314 1 1353 219 73 67 chrY 22773301 22773931 -1939148 - L1M4c LINE L1 -4433 1951 1214 1312 255 45 0 chrY 22774097 22774454 -1938625 - LTR25 LTR ERV1 0 794 422 343 167 76 0 chrY 22774450 22774516 -1938563 - LTR25 LTR ERV1 -253 541 471 * 1817 149 3 27 chrY 22775786 22776112 -1936967 - AluY SINE Alu 0 319 1 1885 243 140 118 chrY 22776540 22778157 -1934922 - L1M4c LINE L1 -4204 2180 502 318 50 0 0 chrY 22778157 22778197 -1934882 + (TG)n Simple_repeat Simple_repeat 1 40 0 1885 243 140 118 chrY 22778197 22778689 -1934390 - L1M4c LINE L1 -5882 502 23 543 295 172 15 chrY 22779193 22780036 -1933043 - L1M4c LINE L1 -4656 1990 1016 312 355 129 44 chrY 22780189 22780552 -1932527 - L1M4c LINE L1 -5755 787 394 323 284 55 47 chrY 22781291 22781418 -1931661 - L2 LINE L2 -421 2893 2766 269 246 0 0 chrY 22781464 22781521 -1931558 + MER20 DNA MER1_type 90 146 -73 192 152 0 0 chrY 22782858 22782891 -1930188 + (TTA)n Simple_repeat Simple_repeat 1 33 0 216 0 0 0 chrY 22783166 22783190 -1929889 + (T)n Simple_repeat Simple_repeat 1 24 0 35522 88 6 6 chrY 22783374 22788336 -1924743 + L1P LINE L1 44 5005 -1141 * 40852 67 2 11 chrY 22788335 22794542 -1918537 + L1PA4 LINE L1 3 6152 -3 238 250 0 0 chrY 22794596 22794644 -1918435 + (TG)n Simple_repeat Simple_repeat 1 48 0 1486 199 85 16 chrY 22794644 22795021 -1918058 - MLT2A1 LTR ERVL -41 403 1 11009 156 8 22 chrY 22795021 22796892 -1916187 - HERVL-A1 LTR ERVL 0 5654 3810 2254 170 21 3 chrY 22796886 22797275 -1915804 - HERVL-A1 LTR ERVL -2058 3596 3201 * 905 182 0 0 chrY 22797263 22797417 -1915662 - HERVL LTR ERVL -998 4656 4503 * 9406 195 29 6 chrY 22797415 22799197 -1913882 - HERVL LTR ERVL -2454 3200 1378 805 196 7 7 chrY 22799198 22799351 -1913728 - MLT2A1 LTR ERVL -291 153 1 * 3347 271 75 34 chrY 22799351 22800649 -1912430 + MER52A LTR ERV1 645 1755 0 339 250 10 21 chrY 22800944 22801040 -1912039 - MER20 DNA MER1_type -24 195 101 1155 213 17 30 chrY 22801144 22801444 -1911635 + L1PA10 LINE L1 5483 5778 -390 692 207 0 0 chrY 22801460 22801595 -1911484 + L1PA10 LINE L1 6022 6156 -12 185 0 0 39 chrY 22801596 22801622 -1911457 + (TTAAA)n Simple_repeat Simple_repeat 1 25 0 1050 247 98 11 chrY 22801771 22802046 -1911033 - AluSx SINE Alu -2 300 2 27 0 0 0 chrY 22803343 22803370 -1909709 + AT_rich Low_complexity Low_complexity 1 27 0 3111 205 2 4 chrY 22804502 22805059 -1908020 + THE1B-int LTR MaLR 1025 1580 0 1039 228 120 30 chrY 22805059 22805393 -1907686 + THE1B LTR MaLR 1 364 0 780 270 13 80 chrY 22805628 22805939 -1907140 - AluJo SINE Alu -17 295 6 1179 195 0 13 chrY 22807227 22807463 -1905616 - AluSq SINE Alu 0 313 81 1960 118 3 30 chrY 22807493 22807798 -1905281 + AluY SINE Alu 1 297 -14 26 30 0 0 chrY 22808650 22808683 -1904396 + AT_rich Low_complexity Low_complexity 1 33 0 186 71 0 0 chrY 22808691 22808719 -1904360 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 257 111 0 0 chrY 22808736 22808772 -1904307 + Charlie3 DNA MER1_type 2649 2684 -26 617 297 6 28 chrY 22809363 22809545 -1903534 - AluJb SINE Alu -133 179 2 356 216 22 7 chrY 22809558 22809697 -1903382 + (TA)n Simple_repeat Simple_repeat 2 142 0 560 189 0 0 chrY 22809930 22810025 -1903054 - AluJb SINE Alu -131 181 87 24 32 0 0 chrY 22810210 22810241 -1902838 + AT_rich Low_complexity Low_complexity 1 31 0 27 29 0 0 chrY 22812149 22812183 -1900896 + AT_rich Low_complexity Low_complexity 1 34 0 26 30 0 0 chrY 22812414 22812447 -1900632 + AT_rich Low_complexity Low_complexity 1 33 0 316 327 117 19 chrY 22813239 22813444 -1899635 + L1MC4a LINE L1 5724 5948 -1860 30 0 0 0 chrY 22813637 22813667 -1899412 + AT_rich Low_complexity Low_complexity 1 30 0 2189 89 3 3 chrY 22813942 22814245 -1898834 - AluY SINE Alu -8 303 1 1077 264 94 4 chrY 22815484 22815760 -1897319 + AluSx SINE Alu 1 301 -1 228 236 36 0 chrY 22815936 22815991 -1897088 - L1PA10 LINE L1 -11 6157 6101 1632 135 24 64 chrY 22816050 22816375 -1896704 - AluSq SINE Alu 0 313 1 378 266 108 29 chrY 22816445 22816584 -1896495 + MER20 DNA MER1_type 25 174 -45 2539 282 10 2 chrY 22816925 22817520 -1895559 - MER52A LTR ERV1 0 1755 1156 21263 164 16 3 chrY 22817520 22821885 -1891194 + HERVL-A1 LTR ERVL 714 5225 -429 366 114 0 0 chrY 22821888 22821958 -1891121 + (CAGC)n Simple_repeat Simple_repeat 2 71 0 785 179 0 6 chrY 22821973 22822141 -1890938 + GA-rich Low_complexity Low_complexity 2 168 0 2144 166 29 2 chrY 22822158 22822567 -1890512 + HERVL-A1 LTR ERVL 5235 5654 0 809 203 62 5 chrY 22822567 22822759 -1890320 + MLT2A1 LTR ERVL 1 203 -241 361 353 59 5 chrY 22823809 22823996 -1889083 + L2 LINE L2 2766 2962 -352 472 299 113 72 chrY 22825053 22825538 -1887541 + L1M4c LINE L1 1990 2494 -3890 1198 292 95 45 chrY 22825595 22826352 -1886727 + L1M4c LINE L1 49 864 -5520 2386 53 23 3 chrY 22826352 22826654 -1886425 + AluY SINE Alu 1 308 -3 1198 292 95 45 chrY 22826654 22826845 -1886234 + L1M4c LINE L1 864 1044 -5340 279 0 0 0 chrY 22826906 22826937 -1886142 + (TC)n Simple_repeat Simple_repeat 2 32 0 371 153 53 0 chrY 22827008 22827139 -1885940 + (TA)n Simple_repeat Simple_repeat 1 138 0 297 241 139 75 chrY 22827139 22827182 -1885897 + L1M4c LINE L1 1051 1090 -5294 1780 175 10 3 chrY 22827182 22827473 -1885606 + AluSc SINE Alu 1 293 -16 297 241 139 75 chrY 22827473 22827570 -1885509 + L1M4c LINE L1 1090 1208 -5176 240 35 0 0 chrY 22827570 22827599 -1885480 + (TAAA)n Simple_repeat Simple_repeat 3 31 0 297 241 139 75 chrY 22827599 22827644 -1885435 + L1M4c LINE L1 1208 1249 -5135 1265 273 118 6 chrY 22827657 22828460 -1884619 + L1M4c LINE L1 1312 2202 -4182 1865 182 0 0 chrY 22828984 22829280 -1883799 + AluSg SINE Alu 1 296 -14 1704 185 3 7 chrY 22830984 22831281 -1881798 - AluY SINE Alu -13 298 3 27 0 0 0 chrY 22831372 22831399 -1881680 + AT_rich Low_complexity Low_complexity 1 27 0 537 264 0 0 chrY 22831866 22831995 -1881084 - MER21B LTR ERV1 -487 376 248 2330 318 18 29 chrY 22832005 22832890 -1880189 - MER52A LTR ERV1 0 1755 923 742 169 0 0 chrY 22832945 22833063 -1880016 + AluSc SINE Alu 167 284 -25 3667 214 6 12 chrY 22833080 22834055 -1879024 + L1P LINE L1 1267 2296 -3850 * 36874 76 18 2 chrY 22834054 22834869 -1878210 - L1PA4 LINE L1 0 6155 5354 2780 22 0 0 chrY 22834869 22835180 -1877899 + AluYa5 SINE Alu 1 311 0 36874 76 18 2 chrY 22835180 22840418 -1872661 - L1PA4 LINE L1 -801 5354 1 1336 285 18 37 chrY 22840422 22840990 -1872089 + LTR25-int LTR ERV1 865 1421 -5575 21 0 0 31 chrY 22840993 22841012 -1872067 + AT_rich Low_complexity Low_complexity 1 20 -11 387 0 0 0 chrY 22841012 22841055 -1872024 + (TG)n Simple_repeat Simple_repeat 2 44 0 21 0 0 31 chrY 22841055 22841067 -1872012 + AT_rich Low_complexity Low_complexity 20 31 0 323 297 11 0 chrY 22841083 22841174 -1871905 + L1MC4 LINE L1 6614 6705 -1337 314 311 11 0 chrY 22841099 22841189 -1871890 - L1MC4 LINE L1 -1337 6705 6615 * 269 296 8 0 chrY 22841213 22841345 -1871734 + (TA)n Simple_repeat Simple_repeat 2 134 0 200 240 40 0 chrY 22841400 22841450 -1871629 + (CATA)n Simple_repeat Simple_repeat 3 54 0 230 178 0 0 chrY 22841451 22841496 -1871583 + L1MC4 LINE L1 6658 6702 -1340 210 71 0 0 chrY 22841499 22841527 -1871552 + (CATATA)n Simple_repeat Simple_repeat 2 29 0 15758 214 67 29 chrY 22841597 22845767 -1867312 + HERVK3 LTR ERVK 2913 7241 -2 1891 153 60 49 chrY 22845769 22846201 -1866878 + LTR3b LTR ERVK 1 437 0 854 225 0 0 chrY 22846250 22846441 -1866638 + AluSg/x SINE Alu 121 311 -1 306 202 298 0 chrY 22846547 22846641 -1866438 + L1MB5 LINE L1 5254 5375 -2410 1365 204 7 26 chrY 22847008 22847312 -1865767 + AluSx SINE Alu 1 298 -14 248 51 0 26 chrY 22848024 22848063 -1865016 + (TTTTA)n Simple_repeat Simple_repeat 1 38 0 6792 40 0 6 chrY 22848065 22849275 -1863804 - L1PA3 LINE L1 -27 6128 4923 1983 226 87 23 chrY 22850347 22851052 -1862027 + L1MB5 LINE L1 5415 6164 -10 1033 190 23 9 chrY 22851223 22851444 -1861635 - MER50 LTR ERV1 0 734 511 510 249 12 12 chrY 22851452 22851625 -1861454 - L1M4 LINE L1 -901 5245 5073 * 588 167 130 57 chrY 22851604 22851723 -1861356 + L1MB3 LINE L1 5354 5494 -680 216 0 0 0 chrY 22851723 22851747 -1861332 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 588 167 130 57 chrY 22851747 22851819 -1861260 + L1MB3 LINE L1 5494 5559 -615 289 206 93 10 chrY 22851813 22851910 -1861169 + L1MB3 LINE L1 6068 6172 -11 * 1246 249 67 48 chrY 22852173 22852740 -1860339 - L1MC3 LINE L1 -1822 5963 5386 6815 39 8 1 chrY 22852861 22854427 -1858652 + L1PA3 LINE L1 4551 6128 -27 248 51 0 26 chrY 22854429 22854468 -1858611 + (TAAAA)n Simple_repeat Simple_repeat 1 38 0 1365 204 7 26 chrY 22855179 22855483 -1857596 - AluSx SINE Alu -14 298 1 306 202 298 0 chrY 22855850 22855944 -1857135 - L1MC3 LINE L1 -2410 5375 5254 854 225 0 0 chrY 22856050 22856241 -1856838 - AluSg/x SINE Alu -1 309 119 1891 153 60 49 chrY 22856290 22856722 -1856357 - LTR3b LTR ERVK 0 437 1 15749 214 67 29 chrY 22856724 22860894 -1852185 - HERVK3 LTR ERVK -2 7241 2913 210 71 0 0 chrY 22860964 22860992 -1852087 + (TATATG)n Simple_repeat Simple_repeat 2 29 0 230 178 0 0 chrY 22860995 22861040 -1852039 - L1MC4 LINE L1 -1340 6702 6658 200 240 40 0 chrY 22861041 22861091 -1851988 + (TATG)n Simple_repeat Simple_repeat 3 54 0 269 296 8 0 chrY 22861146 22861278 -1851801 + (TA)n Simple_repeat Simple_repeat 1 133 0 314 311 11 0 chrY 22861302 22861392 -1851687 + L1MC4 LINE L1 6615 6705 -1337 * 323 297 11 0 chrY 22861317 22861408 -1851671 - L1MC4 LINE L1 -1337 6705 6614 369 0 0 0 chrY 22861438 22861479 -1851600 + (CA)n Simple_repeat Simple_repeat 2 42 0 1336 285 18 37 chrY 22861499 22862067 -1851012 - LTR25-int LTR ERV1 -5575 1421 865 7317 109 2 0 chrY 22862071 22863146 -1849933 + L1P LINE L1 1 1077 -5069 1976 116 4 0 chrY 22863147 22863415 -1849664 + AluSx SINE Alu 33 301 -11 843 241 129 59 chrY 22863828 22864169 -1848910 - MLT1A1 LTR MaLR 0 365 1 1488 139 112 0 chrY 22864473 22864624 -1848455 - AluJo SINE Alu -15 297 164 319 21 42 0 chrY 22864624 22864672 -1848407 + (TTTTA)n Simple_repeat Simple_repeat 1 50 0 1488 139 112 0 chrY 22864672 22864787 -1848292 - AluJo SINE Alu -148 164 1 695 171 34 0 chrY 22865803 22865920 -1847159 - FRAM SINE Alu -25 151 31 295 298 61 0 chrY 22866292 22866423 -1846656 - L1ME LINE L1 -425 5696 5558 1990 158 0 7 chrY 22866453 22866757 -1846322 + AluSx SINE Alu 1 302 -10 1587 208 0 10 chrY 22867307 22867596 -1845483 - AluJo SINE Alu -26 286 1 235 294 71 32 chrY 22867942 22868068 -1845011 + MIR SINE MIR 107 237 -25 255 314 88 31 chrY 22868451 22868610 -1844469 - MIR SINE MIR -27 235 68 1809 161 0 11 chrY 22869129 22869444 -1843635 - AluSx SINE Alu 0 312 1 806 183 0 65 chrY 22870063 22870232 -1842847 + AluJb SINE Alu 146 303 -9 21 36 0 0 chrY 22870646 22870674 -1842405 + AT_rich Low_complexity Low_complexity 1 28 0 762 240 144 7 chrY 22870834 22871185 -1841894 + L1MC4 LINE L1 5542 5797 -373 555 235 0 0 chrY 22871198 22871317 -1841762 + MER106A DNA MER1_type 1 119 -117 339 303 46 51 chrY 22871420 22871595 -1841484 + L1ME3A LINE L1 5987 6160 -10 2136 141 0 0 chrY 22872130 22872436 -1840643 + AluSq SINE Alu 1 306 -7 620 301 58 58 chrY 22873028 22873387 -1839692 + L3 LINE CR1 1042 1400 -177 197 303 138 28 chrY 22873396 22873505 -1839574 + L3b LINE CR1 1452 1572 -11 366 357 157 0 chrY 22873677 22873862 -1839217 - L1MEc LINE L1 -4656 1654 1441 320 294 125 31 chrY 22873896 22874056 -1839023 - L1MEc LINE L1 -4908 1211 1037 282 274 27 7 chrY 22874058 22874204 -1838875 - L1MEc LINE L1 -5133 999 851 333 338 93 34 chrY 22874234 22874471 -1838608 - L1MEc LINE L1 -5300 819 569 237 186 71 43 chrY 22874739 22874809 -1838270 - L1MEc LINE L1 -6031 88 17 21 36 0 0 chrY 22875180 22875208 -1837871 + AT_rich Low_complexity Low_complexity 1 28 0 808 161 0 0 chrY 22875208 22875332 -1837747 - FLAM_C SINE Alu -17 126 3 648 203 196 0 chrY 22875343 22875496 -1837583 - MER5A DNA MER1_type -6 183 1 347 253 69 23 chrY 22875539 22875626 -1837453 - L1MC4 LINE L1 -1339 6703 6613 1383 211 3 3 chrY 22876437 22876726 -1836353 - AluJb SINE Alu -23 289 1 21 0 0 0 chrY 22876738 22876759 -1836320 + AT_rich Low_complexity Low_complexity 1 21 0 1821 155 3 7 chrY 22878143 22878446 -1834633 + AluSx SINE Alu 1 302 -10 1521 166 17 21 chrY 22879282 22879571 -1833508 - L1MB7 LINE L1 -18 6166 5879 2126 73 0 7 chrY 22881844 22882130 -1830949 + AluY SINE Alu 28 311 0 21 36 0 0 chrY 22882889 22882917 -1830162 + AT_rich Low_complexity Low_complexity 1 28 0 493 196 135 74 chrY 22882951 22883115 -1829964 - MIR SINE MIR -64 198 30 216 0 0 0 chrY 22883251 22883275 -1829804 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 413 272 75 112 chrY 22883694 22884090 -1828989 + L1MEd LINE L1 561 927 -5192 1309 157 40 111 chrY 22884090 22884414 -1828665 + AluJb SINE Alu 2 302 0 413 272 75 112 chrY 22884414 22884631 -1828448 + L1MEd LINE L1 927 1151 -4968 392 300 121 44 chrY 22884687 22885453 -1827626 + L1MEd LINE L1 2112 2936 -3193 216 135 0 0 chrY 22885460 22885497 -1827582 + (TC)n Simple_repeat Simple_repeat 2 38 0 257 286 124 19 chrY 22885659 22885764 -1827315 - L2 LINE L2 -18 3295 3180 232 255 0 0 chrY 22885764 22885815 -1827264 - L2 LINE L2 -1027 2287 2237 273 259 47 0 chrY 22886021 22886106 -1826973 + MIR SINE MIR 60 148 -114 369 310 93 39 chrY 22886304 22886433 -1826646 + L2 LINE L2 3122 3257 -15 1963 148 0 0 chrY 22886514 22886812 -1826267 - AluSx SINE Alu -14 298 1 194 321 28 46 chrY 22886812 22886914 -1826165 - L2 LINE L2 -245 3027 2926 514 177 21 85 chrY 22887415 22887556 -1825523 + FLAM_C SINE Alu 2 133 0 935 235 70 35 chrY 22888055 22888396 -1824683 + L1MC4a LINE L1 5691 6043 -1765 257 221 47 23 chrY 22889041 22889127 -1823952 - L1MB7 LINE L1 -236 5885 5798 2754 13 0 0 chrY 22889162 22889473 -1823606 - AluYa5 SINE Alu 0 311 1 345 260 152 30 chrY 22889475 22889936 -1823143 - L1MB7 LINE L1 -463 5701 5189 576 169 17 28 chrY 22889962 22890139 -1822940 + CT-rich Low_complexity Low_complexity 3 177 0 321 150 0 38 chrY 22890145 22890225 -1822854 + (TTTC)n Simple_repeat Simple_repeat 1 77 0 1441 194 4 4 chrY 22890339 22890612 -1822467 - AluJo SINE Alu -38 274 2 922 188 7 0 chrY 22891357 22891511 -1821568 - MER5A DNA MER1_type -33 156 2 2059 110 0 0 chrY 22891847 22892159 -1820920 - AluSx SINE Alu 0 312 1 204 280 40 40 chrY 22894335 22894410 -1818669 + MIR3 SINE MIR 1 75 -133 249 316 13 0 chrY 22894859 22894938 -1818141 + MIR SINE MIR 72 151 -111 241 328 142 0 chrY 22895936 22896070 -1817009 + MIR3 SINE MIR 31 183 -25 236 244 49 37 chrY 22896070 22896152 -1816927 + LTR48 LTR ERV1 59 141 -646 240 211 39 0 chrY 22896524 22896576 -1816503 + MIR SINE MIR 96 149 -59 1806 111 0 32 chrY 22897963 22898243 -1814836 + AluSx SINE Alu 5 275 -37 249 33 0 0 chrY 22898247 22898277 -1814802 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 306 342 145 5 chrY 22898278 22898471 -1814608 + MIR SINE MIR 37 256 -6 22 35 0 0 chrY 22901634 22901663 -1811416 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chrY 22902217 22902239 -1810840 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chrY 22902802 22902822 -1810257 + (T)n Simple_repeat Simple_repeat 1 20 0 315 71 0 0 chrY 22903730 22903772 -1809307 + (TG)n Simple_repeat Simple_repeat 1 42 0 271 340 48 15 chrY 22906321 22906504 -1806575 - MIR3 SINE MIR -57 151 5 237 232 29 29 chrY 22908349 22908418 -1804661 - MIR SINE MIR -55 153 85 1378 105 38 34 chrY 22908500 22908738 -1804341 - AluJb SINE Alu -32 280 42 270 340 9 28 chrY 22908803 22908909 -1804170 + MIR SINE MIR 41 144 -64 289 269 87 47 chrY 22910398 22910547 -1802532 + L2 LINE L2 2910 3064 -208 283 241 103 0 chrY 22910851 22910938 -1802141 + MER5A DNA MER1_type 41 136 -53 241 321 64 0 chrY 22914908 22915017 -1798062 - L2 LINE L2 -1 3271 3156 780 184 0 29 chrY 22915634 22915770 -1797309 - FLAM_C SINE Alu 0 133 2 217 247 59 71 chrY 22916282 22916367 -1796712 - MIR SINE MIR -63 145 62 301 222 16 0 chrY 22918318 22918381 -1794698 - MER63 DNA MER1_type -9 1051 988 427 264 27 0 chrY 22918384 22918494 -1794585 - MER63 DNA MER1_type -95 741 3 2812 94 15 82 chrY 22918533 22919009 -1794070 - MLT2A1 LTR ERVL 0 444 1 210 287 0 0 chrY 22920171 22920258 -1792821 + (TG)n Simple_repeat Simple_repeat 2 88 0 2000 122 0 0 chrY 22920270 22920556 -1792523 - AluSg SINE Alu -24 286 1 235 217 138 64 chrY 22920569 22920772 -1792307 + L1ME4a LINE L1 5903 6120 -1 1354 244 136 25 chrY 22921595 22922123 -1790956 + MLT1E LTR MaLR 3 589 -4 1983 115 6 16 chrY 22922498 22922810 -1790269 + AluSc SINE Alu 1 309 0 2299 96 3 3 chrY 22922961 22923273 -1789806 - AluSp SINE Alu -1 312 1 22 35 0 0 chrY 22923524 22923553 -1789526 + AT_rich Low_complexity Low_complexity 1 29 0 2132 183 141 91 chrY 22923655 22923833 -1789246 + Charlie1a DNA MER1_type 67 235 -2526 1811 162 0 3 chrY 22923833 22924130 -1788949 + AluSx SINE Alu 5 300 -12 2132 183 141 91 chrY 22924130 22924188 -1788891 + Charlie1a DNA MER1_type 235 289 -2472 1707 165 0 14 chrY 22924188 22924479 -1788600 + AluJb SINE Alu 13 299 -13 2132 183 141 91 chrY 22924479 22925048 -1788031 + Charlie1a DNA MER1_type 289 914 -541 1198 167 0 10 chrY 22925052 22925256 -1787823 + AluJb SINE Alu 87 288 -24 832 214 143 65 chrY 22925287 22925657 -1787422 + Charlie1a DNA MER1_type 1057 1455 0 2354 102 16 3 chrY 22926132 22926437 -1786642 + AluSx SINE Alu 1 309 -3 2189 133 3 0 chrY 22927750 22928052 -1785027 + AluSg SINE Alu 1 303 -7 261 0 0 0 chrY 22928214 22928243 -1784836 + (CA)n Simple_repeat Simple_repeat 2 30 0 1977 89 14 38 chrY 22929378 22929670 -1783409 + AluSx SINE Alu 3 287 -25 1143 115 6 0 chrY 22929670 22929826 -1783253 - AluSq SINE Alu -156 157 1 378 0 0 0 chrY 22930919 22930961 -1782118 + (TG)n Simple_repeat Simple_repeat 2 43 0 239 282 70 14 chrY 22931262 22931333 -1781746 + MIR SINE MIR 11 85 -177 186 43 0 0 chrY 22931359 22931382 -1781697 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 183 271 17 0 chrY 22932148 22932207 -1780872 + MIR SINE MIR 85 144 -64 979 178 141 0 chrY 22935651 22935842 -1777237 - 7SLRNA srpRNA srpRNA -8 312 95 1709 166 10 39 chrY 22936784 22937092 -1775987 - AluSx SINE Alu -8 304 6 198 0 0 0 chrY 22938125 22938147 -1774932 + (A)n Simple_repeat Simple_repeat 1 22 0 214 245 38 0 chrY 22938288 22938341 -1774738 - MIR SINE MIR -59 149 95 226 241 167 28 chrY 22938672 22938780 -1774299 - L2 LINE L2 -3 3310 3188 266 289 141 7 chrY 22938786 22938928 -1774151 - MIR3 SINE MIR -17 191 31 227 263 72 59 chrY 22939844 22939996 -1773083 - MIR SINE MIR -37 225 72 7576 33 8 7 chrY 22940883 22941953 -1771126 + L1PA3 LINE L1 5086 6155 0 2130 126 0 0 chrY 22943287 22943594 -1769485 + AluSx SINE Alu 1 307 0 742 178 8 0 chrY 22943930 22944059 -1769020 + MER5A DNA MER1_type 2 131 -58 1533 191 7 4 chrY 22944810 22945083 -1767996 + AluJo SINE Alu 1 274 -38 548 145 22 46 chrY 22945197 22945433 -1767646 + GA-rich Low_complexity Low_complexity 1 230 0 347 250 171 43 chrY 22945464 22945871 -1767208 + L1ME LINE L1 5189 5645 -476 7486 34 2 0 chrY 22945908 22946792 -1766287 + L1PA2 LINE L1 5266 6151 -4 264 209 47 23 chrY 22946836 22946922 -1766157 + L1ME LINE L1 5798 5885 -236 38022 50 2 1 chrY 22947274 22952715 -1760364 + L1PA4 LINE L1 707 6155 0 1025 185 42 28 chrY 22953193 22953409 -1759670 - MER20 DNA MER1_type 0 219 1 383 306 67 54 chrY 22953770 22954084 -1758995 + HAL1 LINE L1 23 340 -2167 226 273 101 50 chrY 22954300 22954350 -1758729 + HAL1 LINE L1 744 790 -1717 1572 182 7 52 chrY 22954350 22954690 -1758389 - AluJb SINE Alu 0 312 3 226 273 101 50 chrY 22954690 22954738 -1758341 + HAL1 LINE L1 790 847 -1660 2134 125 20 0 chrY 22954757 22955053 -1758026 + AluSp SINE Alu 1 302 -11 270 253 94 20 chrY 22955080 22955282 -1757797 + HAL1 LINE L1 854 1070 -1437 449 256 120 74 chrY 22955300 22955801 -1757278 + MLT1F LTR MaLR 19 542 0 907 239 102 33 chrY 22955918 22956311 -1756768 + HAL1 LINE L1 1211 1630 -877 770 233 9 51 chrY 22956340 22956555 -1756524 - MIR SINE MIR -29 233 28 370 304 132 21 chrY 22956567 22956810 -1756269 + HAL1 LINE L1 1634 1903 -604 21 0 0 0 chrY 22956839 22956860 -1756219 + AT_rich Low_complexity Low_complexity 1 21 0 266 235 15 0 chrY 22957020 22957088 -1755991 + HAL1 LINE L1 2243 2311 -196 255 61 0 0 chrY 22957948 22957981 -1755098 + (A)n Simple_repeat Simple_repeat 1 33 0 180 301 133 0 chrY 22958094 22958207 -1754872 + MIR SINE MIR 86 213 -49 3340 99 32 8 chrY 22958789 22959262 -1753817 + LTR15 LTR ERV1 1 484 -9 2191 106 3 0 chrY 22959326 22959639 -1753440 + AluSq SINE Alu 1 314 0 232 318 26 69 chrY 22960368 22960557 -1752522 - L1MC/D LINE L1 -1889 5919 5739 250 255 75 19 chrY 22960557 22960663 -1752416 - L2 LINE L2 -1300 2014 1903 219 69 0 0 chrY 22960885 22960914 -1752165 + (TATG)n Simple_repeat Simple_repeat 4 32 0 195 114 0 0 chrY 22961141 22961176 -1751903 + (TATATG)n Simple_repeat Simple_repeat 2 36 0 186 43 0 0 chrY 22961177 22961200 -1751879 + (GA)n Simple_repeat Simple_repeat 1 23 0 839 112 0 0 chrY 22961200 22961307 -1751772 - FLAM_C SINE Alu -36 107 1 308 138 46 18 chrY 22961715 22961824 -1751255 + (TA)n Simple_repeat Simple_repeat 1 112 0 1059 179 0 6 chrY 22961866 22962045 -1751034 - AluJb SINE Alu -3 309 132 347 222 0 0 chrY 22962045 22962108 -1750971 - AluS SINE Alu -239 64 2 234 319 71 6 chrY 22962200 22962369 -1750710 - L1P LINE L1 -1656 4490 4311 2307 102 0 3 chrY 22962535 22962838 -1750241 + AluY SINE Alu 1 302 -9 404 222 63 75 chrY 22962841 22963080 -1749999 + L1ME4a LINE L1 5882 6117 -4 1484 255 121 20 chrY 22963900 22964437 -1748642 + MLT1E LTR MaLR 3 593 0 2041 131 13 3 chrY 22964741 22965047 -1748032 + AluSc SINE Alu 1 309 0 2221 112 7 0 chrY 22965190 22965493 -1747586 - AluY SINE Alu -6 305 1 2318 191 174 40 chrY 22965869 22966050 -1747029 + Charlie1a DNA MER1_type 67 222 -2539 1803 182 0 3 chrY 22966050 22966347 -1746732 + AluJb SINE Alu 1 296 -16 2318 191 174 40 chrY 22966347 22966913 -1746166 + Charlie1a DNA MER1_type 222 914 -541 1152 191 0 14 chrY 22966917 22967137 -1745942 + AluJb SINE Alu 87 303 -9 755 212 233 9 chrY 22967160 22967486 -1745593 + Charlie1a DNA MER1_type 1057 1455 0 2215 121 0 0 chrY 22967962 22968252 -1744827 + AluSq SINE Alu 1 290 -23 204 185 0 0 chrY 22968386 22968440 -1744639 + (CA)n Simple_repeat Simple_repeat 2 55 0 2094 139 3 0 chrY 22969598 22969899 -1743180 + AluSg SINE Alu 1 302 -8 360 0 0 0 chrY 22970063 22970103 -1742976 + (CA)n Simple_repeat Simple_repeat 2 41 0 919 104 30 8 chrY 22970430 22970564 -1742515 + AluSq/x SINE Alu 3 139 -173 279 79 0 0 chrY 22971525 22971563 -1741516 + (CA)n Simple_repeat Simple_repeat 1 38 0 267 31 0 0 chrY 22972473 22972505 -1740574 + (CAA)n Simple_repeat Simple_repeat 2 33 0 23 0 0 0 chrY 22973075 22973098 -1739981 + AT_rich Low_complexity Low_complexity 1 23 0 21 71 0 0 chrY 22973138 22973180 -1739899 + AT_rich Low_complexity Low_complexity 1 42 0 1998 148 26 50 chrY 22974503 22974887 -1738192 - THE1C LTR MaLR 0 375 1 2126 226 77 26 chrY 22975454 22976068 -1737011 + LTR5 LTR ERVK 1 645 -324 27 29 0 0 chrY 22976110 22976144 -1736935 + AT_rich Low_complexity Low_complexity 1 34 0 1307 232 68 0 chrY 22976369 22976758 -1736321 - HERVK LTR ERVK -1343 5941 5533 11318 186 50 6 chrY 22976981 22979569 -1733510 - HERVK LTR ERVK -1709 5534 2807 2263 90 7 0 chrY 22980724 22981025 -1732054 - AluY SINE Alu -8 303 1 457 279 44 0 chrY 22981027 22981163 -1731916 - Charlie8 DNA MER1_type -2252 165 24 463 257 40 13 chrY 22981396 22981548 -1731531 + MER103 DNA DNA 10 165 -1 286 288 80 44 chrY 22982386 22982612 -1730467 + L2 LINE L2 3012 3245 -27 252 286 8 40 chrY 22985617 22985743 -1727336 + CT-rich Low_complexity Low_complexity 6 127 0 283 263 40 0 chrY 22986160 22986259 -1726820 + CT-rich Low_complexity Low_complexity 1 103 0 217 311 10 19 chrY 22986691 22986794 -1726285 + (TG)n Simple_repeat Simple_repeat 1 102 0 451 215 111 22 chrY 22987359 22987494 -1725585 + MIR3 SINE MIR 17 163 -45 206 190 0 35 chrY 22987678 22987736 -1725343 + (TATATG)n Simple_repeat Simple_repeat 2 57 0 195 203 38 0 chrY 22988453 22988532 -1724547 + (TA)n Simple_repeat Simple_repeat 1 82 0 2382 108 0 0 chrY 22989772 22990078 -1723001 + AluSq SINE Alu 1 306 -7 227 217 0 0 chrY 22990495 22990541 -1722538 + A-rich Low_complexity Low_complexity 1 46 0 427 247 25 0 chrY 22991922 22992043 -1721036 + MIR SINE MIR 71 193 -62 2396 64 0 0 chrY 22992481 22992793 -1720286 + AluY SINE Alu 1 312 0 666 232 103 5 chrY 22993088 22993273 -1719806 + MIR SINE MIR 31 233 -29 210 71 0 0 chrY 22993303 22993331 -1719748 + (ATG)n Simple_repeat Simple_repeat 2 29 0 2039 148 0 0 chrY 22993413 22993704 -1719375 + AluSx SINE Alu 1 291 -21 272 241 0 0 chrY 22993863 22993921 -1719158 + L2 LINE L2 3215 3272 0 2424 84 0 7 chrY 22993926 22994235 -1718844 + AluY SINE Alu 1 307 -4 417 336 36 0 chrY 22994598 22994738 -1718341 + MIR SINE MIR 19 163 -99 556 126 0 32 chrY 22994740 22994835 -1718244 + AluJ/FRAM SINE Alu 221 312 0 38 0 0 20 chrY 22994835 22994849 -1718230 + AT_rich Low_complexity Low_complexity 1 14 -34 2121 122 0 3 chrY 22994849 22995137 -1717942 + AluSx SINE Alu 1 287 -25 38 0 0 20 chrY 22995137 22995171 -1717908 + AT_rich Low_complexity Low_complexity 14 48 0 368 261 203 0 chrY 22995967 22996120 -1716959 - MIR3 SINE MIR -3 205 22 457 240 147 0 chrY 22996506 22996656 -1716423 - MIR SINE MIR -29 233 62 28 71 0 0 chrY 22996700 22996756 -1716323 + AT_rich Low_complexity Low_complexity 1 56 0 249 288 51 17 chrY 22997076 22997194 -1715885 - MIR SINE MIR -1 261 140 229 373 37 8 chrY 22997935 22998069 -1715010 + L2 LINE L2 3129 3266 -6 284 329 181 9 chrY 22998253 22998469 -1714610 - MIR SINE MIR -6 256 4 246 348 162 25 chrY 22998622 22998826 -1714253 - MIR SINE MIR -6 256 25 1033 261 134 29 chrY 22999322 22999798 -1713281 + MLT1K LTR MaLR 56 581 -7 385 251 56 70 chrY 22999880 22999982 -1713097 + L2 LINE L2 3008 3110 -203 1602 199 3 17 chrY 22999982 23000004 -1713075 - AluJo SINE Alu -10 302 281 441 0 0 0 chrY 23000004 23000053 -1713026 + (TG)n Simple_repeat Simple_repeat 2 50 0 1602 199 3 17 chrY 23000053 23000332 -1712747 - AluJo SINE Alu -31 281 5 385 251 56 70 chrY 23000332 23000444 -1712635 + L2 LINE L2 3110 3219 -94 377 191 13 4 chrY 23000444 23000534 -1712545 - AluJ/FRAM SINE Alu -4 298 223 2140 125 0 0 chrY 23002563 23002866 -1710213 + AluSg SINE Alu 1 303 -7 200 191 11 79 chrY 23003103 23003192 -1709887 + (CAGGG)n Simple_repeat Simple_repeat 3 85 0 456 157 0 0 chrY 23005955 23006038 -1707041 - AluSq SINE Alu -1 312 230 882 154 21 0 chrY 23006040 23006183 -1706896 - AluSq SINE Alu -161 151 6 939 232 37 35 chrY 23006191 23006650 -1706429 - L1M2 LINE L1 -4226 2623 2071 2136 124 3 22 chrY 23006650 23006965 -1706114 - AluSg SINE Alu -1 309 1 939 232 37 35 chrY 23006965 23007071 -1706008 - L1M2 LINE L1 -4778 2071 1967 660 168 0 0 chrY 23007072 23007173 -1705906 - FLAM_C SINE Alu -40 103 3 694 146 0 18 chrY 23007175 23007285 -1705794 + FLAM_C SINE Alu 27 134 -9 1814 119 3 65 chrY 23007287 23007580 -1705499 + AluSx SINE Alu 37 311 -1 222 285 30 75 chrY 23007975 23008067 -1705012 + L2 LINE L2 3118 3213 -100 2338 112 0 0 chrY 23008067 23008380 -1704699 + AluSq SINE Alu 1 313 0 222 285 30 75 chrY 23008380 23008487 -1704592 + L2 LINE L2 3213 3308 -5 1981 131 0 0 chrY 23008924 23009191 -1703888 + AluSx SINE Alu 1 267 -45 331 236 109 36 chrY 23009318 23009428 -1703651 + L2 LINE L2 3195 3312 -1 21 36 0 0 chrY 23009814 23009842 -1703237 + AT_rich Low_complexity Low_complexity 1 28 0 1489 210 51 39 chrY 23009969 23010731 -1702348 - L1M4c LINE L1 -4071 2313 1451 980 134 20 25 chrY 23010733 23010934 -1702145 - L1MA5 LINE L1 0 6300 6101 1882 169 17 0 chrY 23012096 23012398 -1700681 - AluJb SINE Alu -5 307 1 390 388 43 25 chrY 23012561 23013111 -1699968 - L2 LINE L2 -2 3270 2710 482 257 0 9 chrY 23013122 23013235 -1699844 - L2 LINE L2 -5 3308 3197 184 167 19 19 chrY 23013514 23013568 -1699511 + (TA)n Simple_repeat Simple_repeat 1 54 0 569 135 0 0 chrY 23013714 23013810 -1699269 - L1MA5 LINE L1 -5 6295 6200 236 170 19 0 chrY 23013849 23013902 -1699177 + (CATATA)n Simple_repeat Simple_repeat 3 56 0 38 75 0 0 chrY 23015267 23015347 -1697732 + AT_rich Low_complexity Low_complexity 1 80 0 2420 94 0 0 chrY 23015419 23015727 -1697352 + AluY SINE Alu 1 308 -3 48 0 0 0 chrY 23015861 23015909 -1697170 + AT_rich Low_complexity Low_complexity 1 48 0 2157 129 31 47 chrY 23016934 23017315 -1695764 + THE1C LTR MaLR 1 375 0 203 286 12 12 chrY 23017402 23017486 -1695593 + (TA)n Simple_repeat Simple_repeat 1 84 0 1026 279 118 27 chrY 23017742 23018786 -1694293 - L1ME3A LINE L1 -94 6010 4906 1052 244 11 15 chrY 23018786 23019048 -1694031 - MLT1D LTR MaLR -10 495 235 42039 46 23 3 chrY 23019049 23025121 -1687958 - L1PA2 LINE L1 0 6155 2 873 223 29 38 chrY 23025121 23025359 -1687720 - MLT1D LTR MaLR -390 236 1 272 286 120 16 chrY 23025556 23025748 -1687331 - L1ME3A LINE L1 -1430 4699 4488 * 536 228 16 31 chrY 23025745 23025938 -1687141 - L1ME3A LINE L1 -2163 3966 3777 943 301 73 14 chrY 23025938 23026595 -1686484 - L2 LINE L2 -4 3309 2616 245 342 8 0 chrY 23026759 23026876 -1686203 + L1M4 LINE L1 3524 3641 -2505 342 280 76 74 chrY 23026882 23027392 -1685687 - MER65A LTR ERV1 0 445 2 220 271 149 0 chrY 23027523 23027630 -1685449 + L2 LINE L2 2321 2443 -871 240 252 56 56 chrY 23027777 23027920 -1685159 - MLT2E LTR ERVL -6 622 480 671 285 104 50 chrY 23028303 23028766 -1684313 - L1ME3A LINE L1 -5285 834 347 920 322 50 38 chrY 23028846 23029265 -1683814 - MLT1E LTR MaLR -148 445 22 376 323 93 48 chrY 23030390 23030928 -1682151 - L2 LINE L2 -1 3271 2716 23 78 0 0 chrY 23031341 23031392 -1681687 + AT_rich Low_complexity Low_complexity 1 51 0 2192 112 6 3 chrY 23031591 23031903 -1681176 - AluSq SINE Alu 0 313 1 5757 111 27 1 chrY 23032038 23032897 -1680182 - L1PA14 LINE L1 -1 6160 5280 875 218 0 29 chrY 23032973 23033147 -1679932 + FAM SINE Alu 4 172 -3 206 128 26 0 chrY 23033169 23033208 -1679871 + (TATATG)n Simple_repeat Simple_repeat 2 41 0 309 109 0 0 chrY 23033367 23033413 -1679666 + (CA)n Simple_repeat Simple_repeat 1 46 0 749 189 111 18 chrY 23034428 23034671 -1678408 - AluJb SINE Alu -3 309 1 274 315 168 13 chrY 23034680 23034918 -1678161 - L2 LINE L2 -112 3201 2927 250 326 22 0 chrY 23035131 23035223 -1677856 + MIR SINE MIR 82 175 -87 1131 230 123 10 chrY 23035227 23035527 -1677552 - MLT1C LTR MaLR 0 467 134 238 348 54 0 chrY 23036467 23036579 -1676500 + MER5B DNA MER1_type 1 118 -60 189 316 101 54 chrY 23037900 23038068 -1675011 - L3 LINE CR1 -10 1567 1392 214 355 25 55 chrY 23038260 23038460 -1674619 - L3 LINE CR1 -440 1137 944 449 314 35 12 chrY 23038471 23038640 -1674439 + LTR33 LTR ERVL 1 173 -348 409 226 105 38 chrY 23038724 23038763 -1674316 + LTR33 LTR ERVL 378 413 -108 2045 163 60 24 chrY 23038763 23038779 -1674300 - MSTB1 LTR MaLR 0 432 418 315 0 0 0 chrY 23038779 23038814 -1674265 + (TG)n Simple_repeat Simple_repeat 2 36 0 2045 163 60 24 chrY 23038814 23039064 -1674015 - MSTB1 LTR MaLR -14 418 143 2217 105 0 3 chrY 23039064 23039358 -1673721 + AluSq SINE Alu 5 297 -16 2045 163 60 24 chrY 23039358 23039507 -1673572 - MSTB1 LTR MaLR -289 143 1 409 226 105 38 chrY 23039507 23039600 -1673479 + LTR33 LTR ERVL 413 519 -2 1988 132 7 0 chrY 23039687 23039998 -1673081 - AluSg SINE Alu 0 310 1 310 261 30 37 chrY 23040065 23040199 -1672880 - L3 LINE CR1 -784 793 661 311 308 163 18 chrY 23040207 23040434 -1672645 + MIR SINE MIR 2 261 -1 2114 143 0 0 chrY 23040857 23041158 -1671921 - AluSx SINE Alu -11 301 1 1270 211 14 39 chrY 23041289 23041569 -1671510 - AluJo SINE Alu -16 296 24 2236 136 7 0 chrY 23041630 23041940 -1671139 - AluSx SINE Alu 0 312 1 300 247 14 14 chrY 23043203 23043276 -1669803 - L3 LINE CR1 -947 630 558 2209 116 7 7 chrY 23043602 23043912 -1669167 + AluSg SINE Alu 1 310 0 180 111 0 0 chrY 23043932 23043959 -1669120 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 606 233 141 5 chrY 23044873 23045157 -1667922 - MLT1I LTR MaLR -3 406 35 202 291 0 0 chrY 23045887 23045942 -1667137 + (CA)n Simple_repeat Simple_repeat 2 56 0 241 262 155 0 chrY 23047262 23047346 -1665733 + L1ME4a LINE L1 6004 6100 -21 183 129 0 0 chrY 23047386 23047417 -1665662 + (TTG)n Simple_repeat Simple_repeat 2 32 0 576 248 56 110 chrY 23047881 23047932 -1665147 + MLT1H LTR MaLR 62 114 -428 2250 90 0 32 chrY 23047932 23048244 -1664835 + AluY SINE Alu 6 307 -4 576 248 56 110 chrY 23048244 23048526 -1664553 + MLT1H LTR MaLR 114 375 -167 433 327 54 18 chrY 23048690 23048968 -1664111 - L2 LINE L2 -463 2851 2564 2087 152 0 0 chrY 23049014 23049323 -1663756 + AluSc SINE Alu 1 309 0 632 272 28 42 chrY 23050261 23050478 -1662601 - MIR SINE MIR -13 249 36 436 250 125 0 chrY 23050778 23050906 -1662173 - LTR33 LTR ERVL 0 521 378 256 355 0 11 chrY 23051001 23051094 -1661985 - LTR33 LTR ERVL -364 157 66 2129 98 0 21 chrY 23051098 23051409 -1661670 - AluSg SINE Alu 0 305 1 444 284 57 21 chrY 23051736 23051930 -1661149 + L2 LINE L2 3102 3302 -11 3512 171 28 67 chrY 23052421 23052565 -1660514 + LTR39 LTR ERV1 51 199 -584 903 50 17 0 chrY 23052565 23052684 -1660395 + L1PA4 LINE L1 6034 6154 -1 3512 171 28 67 chrY 23052684 23052986 -1660093 + LTR39 LTR ERV1 199 457 -326 2081 151 0 0 chrY 23052986 23053285 -1659794 - AluSx SINE Alu -13 299 1 3512 171 28 67 chrY 23053285 23053599 -1659480 + LTR39 LTR ERV1 457 782 -1 422 265 61 20 chrY 23053606 23053753 -1659326 + MIR SINE MIR 46 198 -64 271 205 64 0 chrY 23054980 23055058 -1658021 + MIR SINE MIR 102 184 -78 275 250 102 19 chrY 23055741 23055849 -1657230 - L2 LINE L2 -1 3271 3155 231 258 131 102 chrY 23056119 23056265 -1656814 - MIR SINE MIR -6 256 116 1702 122 214 25 chrY 23056265 23056329 -1656750 - MSTA LTR MaLR 0 428 377 1899 142 29 0 chrY 23056329 23056449 -1656630 + AluSg SINE Alu 1 116 -247 261 0 0 0 chrY 23056449 23056478 -1656601 + (CA)n Simple_repeat Simple_repeat 2 30 0 1899 142 29 0 chrY 23056478 23056712 -1656367 + AluSg SINE Alu 116 363 0 1702 122 214 25 chrY 23056712 23057005 -1656074 - MSTA LTR MaLR -51 377 1 231 258 131 102 chrY 23057005 23057102 -1655977 - MIR SINE MIR -146 116 6 2354 90 0 3 chrY 23057834 23058133 -1654946 + AluSx SINE Alu 1 298 -14 2016 143 0 3 chrY 23058748 23059041 -1654038 + AluSq SINE Alu 1 292 -21 1268 240 56 36 chrY 23059042 23059487 -1653592 + LTR37B LTR ERV1 15 468 0 213 328 42 34 chrY 23060000 23060119 -1652960 - MIR SINE MIR -129 133 14 486 180 0 0 chrY 23060119 23060219 -1652860 + CT-rich Low_complexity Low_complexity 4 103 0 596 206 174 0 chrY 23060223 23060378 -1652701 - L2 LINE L2 -14 3299 3118 231 88 0 0 chrY 23060951 23060985 -1652094 + (CA)n Simple_repeat Simple_repeat 2 35 0 521 220 36 36 chrY 23061561 23061729 -1651350 + MER5B DNA MER1_type 11 178 0 308 297 0 0 chrY 23061954 23062045 -1651034 - MIR SINE MIR -108 154 64 890 201 0 6 chrY 23063294 23063499 -1649580 - FRAM SINE Alu 0 176 1 1798 221 37 42 chrY 23063647 23064104 -1648975 - MLT1E3 LTR MaLR -9 615 161 288 280 93 28 chrY 23064334 23064441 -1648638 + MIR SINE MIR 75 188 -74 415 288 212 11 chrY 23064608 23064882 -1648197 + L1ME4a LINE L1 5533 5861 -260 4612 108 44 39 chrY 23065658 23066080 -1646999 - MER4E LTR ERV1 0 779 350 2191 102 20 7 chrY 23066080 23066373 -1646706 + AluSg SINE Alu 1 297 -13 4612 108 44 39 chrY 23066373 23066725 -1646354 - MER4E LTR ERV1 -429 350 1 218 325 25 33 chrY 23066967 23067087 -1645992 + MIR SINE MIR 20 138 -124 239 363 44 28 chrY 23067410 23067592 -1645487 + MER5A DNA MER1_type 2 186 -3 610 234 76 35 chrY 23067737 23067908 -1645171 - MLT1K LTR MaLR -16 572 395 3820 114 32 50 chrY 23068009 23068665 -1644414 - LTR9B LTR ERV1 0 644 1 2010 137 10 3 chrY 23069672 23069971 -1643108 - AluSq SINE Alu -12 301 1 2273 110 0 0 chrY 23071258 23071558 -1641521 - AluSq SINE Alu -13 300 1 23 54 0 0 chrY 23071753 23071790 -1641289 + AT_rich Low_complexity Low_complexity 1 37 0 1525 182 0 18 chrY 23071790 23072070 -1641009 - AluJo SINE Alu -8 304 30 1967 137 7 27 chrY 23072857 23073157 -1639922 - AluSx SINE Alu -18 294 1 475 332 75 26 chrY 23073247 23073473 -1639606 - MIR SINE MIR -14 248 12 1304 187 39 21 chrY 23073614 23073737 -1639342 + AluJb SINE Alu 1 120 -192 246 95 0 0 chrY 23073737 23073779 -1639300 + (TAAA)n Simple_repeat Simple_repeat 1 42 0 1304 187 39 21 chrY 23073779 23073938 -1639141 + AluJb SINE Alu 120 288 -24 2207 104 40 0 chrY 23074229 23074528 -1638551 - AluY SINE Alu 0 311 1 2171 126 0 0 chrY 23074577 23074878 -1638201 + AluSx SINE Alu 1 301 -11 552 247 50 63 chrY 23074935 23075174 -1637905 + MIR SINE MIR 25 260 -2 248 246 18 18 chrY 23075175 23075232 -1637847 - L3 LINE CR1 -101 1476 1420 310 403 62 6 chrY 23075251 23075427 -1637652 - MIR3 SINE MIR -3 205 20 2371 70 0 38 chrY 23075482 23075797 -1637282 - AluY SINE Alu -8 303 1 1631 206 3 0 chrY 23076028 23076310 -1636769 - AluJo SINE Alu -29 283 1 717 233 168 67 chrY 23076693 23077097 -1635982 + MLT1J1 LTR MaLR 1 445 -1 1582 213 118 10 chrY 23077787 23078187 -1634892 - MLT1F1 LTR MaLR 0 567 125 670 200 17 0 chrY 23078221 23078341 -1634738 - FLAM_C SINE Alu -19 124 3 550 241 0 0 chrY 23078342 23078450 -1634629 - MLT1F1 LTR MaLR -434 133 26 279 0 0 0 chrY 23078451 23078482 -1634597 + (TG)n Simple_repeat Simple_repeat 2 32 0 2096 122 3 23 chrY 23078483 23078787 -1634292 - AluSc SINE Alu -11 298 1 1265 150 11 0 chrY 23078792 23078979 -1634100 + AluSg/x SINE Alu 97 285 -27 495 0 0 0 chrY 23078979 23079034 -1634045 + (CA)n Simple_repeat Simple_repeat 2 56 0 630 283 85 0 chrY 23079034 23079211 -1633868 + MLT1F1 LTR MaLR 27 218 -349 291 296 0 0 chrY 23079255 23079326 -1633753 - L2 LINE L2 -16 3297 3227 1664 188 18 0 chrY 23079330 23079606 -1633473 + AluJo SINE Alu 1 281 -31 303 28 0 0 chrY 23079607 23079643 -1633436 + (GGGGA)n Simple_repeat Simple_repeat 4 39 0 2437 65 10 0 chrY 23080070 23080363 -1632716 + AluY SINE Alu 1 296 -15 1061 205 58 5 chrY 23080413 23080637 -1632442 - MER8 DNA MER2_type 0 239 4 491 324 24 29 chrY 23080814 23081021 -1632058 - MIR3 SINE MIR 0 208 3 733 231 193 0 chrY 23081166 23081378 -1631701 - MIR SINE MIR -5 257 5 242 263 105 32 chrY 23081676 23081771 -1631308 + MIR SINE MIR 43 144 -64 2423 166 55 66 chrY 23082098 23082495 -1630584 - L1MB8 LINE L1 -2 6176 5787 2190 127 3 3 chrY 23082495 23082802 -1630277 - AluSx SINE Alu 0 312 6 2423 166 55 66 chrY 23082802 23083042 -1630037 - L1MB8 LINE L1 -391 5787 5546 532 234 100 90 chrY 23083114 23083282 -1629797 + L1MC4 LINE L1 7349 7514 -528 2141 126 0 3 chrY 23083282 23083583 -1629496 + AluSx SINE Alu 1 300 -12 532 234 100 90 chrY 23083583 23083790 -1629289 + L1MC4 LINE L1 7514 7717 -325 2469 64 0 0 chrY 23083790 23084088 -1628991 + AluY SINE Alu 1 298 -13 532 234 100 90 chrY 23084088 23084188 -1628891 + L1MC4 LINE L1 7717 7934 -108 410 238 12 101 chrY 23085805 23085908 -1627171 - MER103 DNA DNA -6 160 76 2576 53 0 0 chrY 23085908 23086210 -1626869 + AluY SINE Alu 3 304 -7 410 238 12 101 chrY 23086210 23086274 -1626805 - MER103 DNA DNA -90 76 8 350 261 52 28 chrY 23086375 23086586 -1626493 + L1MC5 LINE L1 7580 7795 -166 2048 159 0 0 chrY 23087222 23087523 -1625556 - AluSx SINE Alu -11 301 1 557 309 26 34 chrY 23087804 23088024 -1625055 + MIR SINE MIR 2 214 -48 1987 156 7 0 chrY 23088040 23088348 -1624731 - AluSx SINE Alu -2 310 1 183 129 0 0 chrY 23088373 23088404 -1624675 + (CAT)n Simple_repeat Simple_repeat 1 31 0 2814 140 19 20 chrY 23088467 23088954 -1624125 - LTR45B LTR ERV1 -2 487 2 1901 158 7 0 chrY 23089047 23089331 -1623748 - AluSx SINE Alu -18 294 9 39 50 0 0 chrY 23089583 23089643 -1623436 + AT_rich Low_complexity Low_complexity 1 60 0 433 138 0 0 chrY 23089776 23089841 -1623238 - LOR1b LTR ERV1 0 461 397 951 156 0 0 chrY 23089842 23089983 -1623096 + AluJb SINE Alu 1 141 -171 2443 154 20 7 chrY 23090035 23090477 -1622602 - LOR1a LTR ERV1 -49 448 1 185 300 0 20 chrY 23090710 23090760 -1622319 + MIR SINE MIR 93 141 -67 1698 189 7 17 chrY 23090890 23091187 -1621892 - AluJo SINE Alu -18 294 1 360 269 97 16 chrY 23091305 23091491 -1621588 - L1MCc LINE L1 -6205 218 18 21 0 0 0 chrY 23092280 23092301 -1620778 + AT_rich Low_complexity Low_complexity 1 21 0 291 28 0 0 chrY 23093435 23093471 -1619608 + (TC)n Simple_repeat Simple_repeat 1 36 0 * 342 45 0 0 chrY 23093470 23093514 -1619565 + (CA)n Simple_repeat Simple_repeat 1 44 0 255 313 40 30 chrY 23093904 23094003 -1619076 + L2 LINE L2 3167 3266 -6 318 273 49 77 chrY 23094226 23094313 -1618766 - MER5B DNA MER1_type 0 178 90 2384 95 0 0 chrY 23094313 23094617 -1618462 - AluY SINE Alu -7 304 1 318 273 49 77 chrY 23094617 23094632 -1618447 - MER5B DNA MER1_type -88 90 76 3316 122 6 10 chrY 23094632 23095131 -1617948 + LOR1a LTR ERV1 1 497 0 318 273 49 77 chrY 23095131 23095210 -1617869 - MER5B DNA MER1_type -102 76 1 2038 176 2 35 chrY 23095397 23095800 -1617279 + MLT1B LTR MaLR 1 390 0 2229 115 6 6 chrY 23096145 23096457 -1616622 + AluSp SINE Alu 1 312 -1 198 393 60 0 chrY 23096471 23096555 -1616524 + L2 LINE L2 3159 3247 -25 26 64 0 0 chrY 23096674 23096721 -1616358 + AT_rich Low_complexity Low_complexity 1 47 0 459 287 101 71 chrY 23096865 23097273 -1615806 - L2 LINE L2 -50 3263 2844 1822 171 30 7 chrY 23097592 23097897 -1615182 + AluJo SINE Alu 1 312 0 2021 152 0 0 chrY 23098343 23098640 -1614439 + AluSx SINE Alu 1 297 -15 272 286 86 19 chrY 23098845 23098950 -1614129 + L2 LINE L2 3190 3301 -12 240 250 121 73 chrY 23099156 23099280 -1613799 + L2 LINE L2 3143 3272 0 207 139 0 0 chrY 23099973 23100009 -1613070 + (GA)n Simple_repeat Simple_repeat 1 36 0 287 275 147 37 chrY 23100240 23100349 -1612730 + L2 LINE L2 3193 3313 0 4022 231 81 16 chrY 23100355 23101843 -1611236 + L1MB8 LINE L1 3549 5271 -907 2350 113 0 0 chrY 23101843 23102143 -1610936 + AluSg SINE Alu 1 300 -10 4022 231 81 16 chrY 23102143 23103115 -1609964 + L1MB8 LINE L1 5271 6178 0 2061 125 0 3 chrY 23103719 23104007 -1609072 - AluSg SINE Alu -22 288 2 198 0 0 0 chrY 23105669 23105691 -1607388 + (CA)n Simple_repeat Simple_repeat 2 23 0 792 207 0 30 chrY 23105695 23105864 -1607215 + FRAM SINE Alu 7 170 -6 22 35 0 0 chrY 23105896 23105925 -1607154 + AT_rich Low_complexity Low_complexity 1 29 0 1386 225 7 14 chrY 23105925 23106218 -1606861 - AluSx SINE Alu -21 291 1 1414 270 87 11 chrY 23106804 23107426 -1605653 + LTR65 LTR ERV1 1 669 0 2357 81 7 0 chrY 23107654 23107963 -1605116 + AluY SINE Alu 1 311 0 2166 98 3 25 chrY 23108009 23108327 -1604752 - AluY SINE Alu 0 311 1 319 56 37 0 chrY 23108330 23108384 -1604695 + (TTTTTA)n Simple_repeat Simple_repeat 2 57 0 1299 182 73 11 chrY 23108386 23108661 -1604418 + AluSg SINE Alu 2 293 -17 324 320 148 47 chrY 23109095 23109479 -1603600 + L1MEc LINE L1 56 478 -5918 823 256 13 76 chrY 23109492 23109886 -1603193 - L1M3de LINE L1 -5277 1456 1088 * 1394 271 97 70 chrY 23109858 23110659 -1602420 - L1M2b LINE L1 -6372 837 15 1829 155 6 22 chrY 23110700 23111016 -1602063 - AluSx SINE Alu -1 311 1 2255 282 42 55 chrY 23111053 23112186 -1600893 - L1M3de LINE L1 -4602 2051 286 225 306 56 0 chrY 23112764 23112836 -1600243 - L1M3de LINE L1 -5638 1491 1416 283 323 0 0 chrY 23112864 23112957 -1600122 - L1M3de LINE L1 -6284 845 753 24 32 0 0 chrY 23113454 23113485 -1599594 + AT_rich Low_complexity Low_complexity 1 31 0 270 247 47 24 chrY 23115321 23115406 -1597673 + (TCTCTG)n Simple_repeat Simple_repeat 2 88 0 2371 243 89 41 chrY 23115420 23116498 -1596581 + LTR65-int LTR ERV1 287 1416 -3520 1927 167 10 0 chrY 23116511 23116810 -1596269 + AluSx SINE Alu 1 302 -10 352 220 13 80 chrY 23116897 23117047 -1596032 + MER31-int LTR ERV1 3676 3815 -1121 1153 186 0 83 chrY 23117128 23117381 -1595698 + AluJb SINE Alu 1 232 -80 432 0 0 0 chrY 23117407 23117455 -1595624 + (TA)n Simple_repeat Simple_repeat 1 48 0 658 243 107 27 chrY 23117455 23117942 -1595137 + MER31-int LTR ERV1 4125 4678 -258 640 246 48 66 chrY 23117951 23118093 -1594986 + MLT1A1 LTR MaLR 80 223 -142 1889 125 29 4 chrY 23118093 23118428 -1594651 + AluSc SINE Alu 1 342 0 2164 117 3 19 chrY 23118429 23118745 -1594334 + AluY SINE Alu 1 311 0 640 246 48 66 chrY 23118745 23118870 -1594209 + MLT1A1 LTR MaLR 222 346 -19 1414 216 16 13 chrY 23119164 23119470 -1593609 - AluJb SINE Alu 0 312 6 1390 198 28 25 chrY 23119984 23120267 -1592812 + AluSg SINE Alu 5 288 -22 837 133 22 0 chrY 23121140 23121275 -1591804 - AluSp/q SINE Alu -5 308 171 1187 206 86 37 chrY 23122353 23122781 -1590298 + L1M4 LINE L1 5297 5745 -429 1955 113 7 0 chrY 23122887 23123161 -1589918 + AluY SINE Alu 1 276 -35 458 17 17 0 chrY 23123161 23123220 -1589859 + (TA)n Simple_repeat Simple_repeat 2 61 0 1800 139 8 0 chrY 23123396 23123655 -1589424 + AluSc SINE Alu 1 261 -48 28 61 0 0 chrY 23124010 23124059 -1589020 + AT_rich Low_complexity Low_complexity 1 49 0 22 56 0 0 chrY 23124852 23124888 -1588191 + AT_rich Low_complexity Low_complexity 1 36 0 185 341 135 16 chrY 23126030 23126156 -1586923 + L2 LINE L2 2885 3025 -288 21 36 0 0 chrY 23127987 23128015 -1585064 + AT_rich Low_complexity Low_complexity 1 28 0 315 0 0 0 chrY 23128070 23128105 -1584974 + (CA)n Simple_repeat Simple_repeat 2 36 0 29 0 0 0 chrY 23128250 23128279 -1584800 + AT_rich Low_complexity Low_complexity 1 29 0 824 202 25 62 chrY 23128643 23128886 -1584193 - AluJb SINE Alu -78 234 1 1272 177 49 11 chrY 23128995 23129260 -1583819 + MER1B DNA MER1_type 1 275 -64 292 149 15 45 chrY 23129406 23129473 -1583606 + MER1B DNA MER1_type 252 316 -13 387 305 0 0 chrY 23129485 23129590 -1583489 - FLAM_C SINE Alu -23 110 6 22 0 0 0 chrY 23130893 23130915 -1582164 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chrY 23131102 23131123 -1581956 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chrY 23131193 23131214 -1581865 + AT_rich Low_complexity Low_complexity 1 21 0 27821 68 2 9 chrY 23131708 23136444 -1576635 - L1PA5 LINE L1 -2 6152 1446 5728 56 16 1 chrY 23136444 23137181 -1575898 - L1PA3 LINE L1 0 6155 5408 12338 45 0 1 chrY 23137181 23138783 -1574296 + L1PA3 LINE L1 3803 5403 -743 9562 117 3 0 chrY 23138799 23140255 -1572824 - L1PA5 LINE L1 -4686 1460 1 236 322 99 8 chrY 23141339 23141460 -1571619 + MIR SINE MIR 57 188 -74 348 24 0 0 chrY 23141736 23141777 -1571302 + (CA)n Simple_repeat Simple_repeat 2 42 0 1212 225 11 7 chrY 23141950 23142234 -1570845 + AluSx SINE Alu 13 297 -15 181 200 46 0 chrY 23142337 23142402 -1570677 + CT-rich Low_complexity Low_complexity 2 69 0 * 201 147 0 0 chrY 23142394 23142428 -1570651 + (TTCC)n Simple_repeat Simple_repeat 3 36 0 658 151 50 7 chrY 23142437 23142576 -1570503 - FRAM SINE Alu -7 169 25 1824 241 34 35 chrY 23142671 23143381 -1569698 + L1MC1 LINE L1 5551 6311 -22 414 244 89 44 chrY 23143398 23143713 -1569366 - MER96B DNA MER1_type? -65 352 24 266 211 42 0 chrY 23143764 23143835 -1569244 - MER66B LTR ERV1 -2 484 411 843 217 38 52 chrY 23143877 23144167 -1568912 + pTR5 LTR ERV1 743 1028 -1410 4449 139 78 18 chrY 23144245 23145024 -1568055 + LTR12 LTR ERV1 1 826 0 53731 109 21 10 chrY 23145024 23153443 -1559636 + HERV9 LTR ERV1 1 8399 0 1502 90 369 137 chrY 23153496 23154125 -1558954 + LTR12 LTR ERV1 31 714 0 1077 225 92 22 chrY 23154172 23154488 -1558591 - MER66B LTR ERV1 -148 338 1 1531 201 33 6 chrY 23154488 23154817 -1558262 - MER66B-int LTR ERV1 0 6676 6339 1413 287 31 38 chrY 23154951 23155845 -1557234 - MER66-int LTR ERV1 -1579 6177 4855 1862 176 3 0 chrY 23155845 23156147 -1556932 + AluSc SINE Alu 1 303 -6 1413 287 31 38 chrY 23156147 23156380 -1556699 - MER66-int LTR ERV1 -2901 4855 4622 488 223 19 0 chrY 23156667 23156770 -1556309 - MER2 DNA MER2_type -235 110 6 408 295 28 51 chrY 23156898 23157152 -1555927 - L1M4 LINE L1 -1846 4300 4053 783 339 72 48 chrY 23157187 23157387 -1555692 - L1M4 LINE L1 -2192 3954 3760 1425 207 149 13 chrY 23157387 23157763 -1555316 + MSTA LTR MaLR 1 427 -1 783 339 72 48 chrY 23157763 23158459 -1554620 - L1M4 LINE L1 -2386 3760 3036 314 291 149 26 chrY 23158492 23158760 -1554319 - L1M4 LINE L1 -3210 2936 2636 221 102 0 92 chrY 23158847 23158945 -1554134 + (TTAA)n Simple_repeat Simple_repeat 3 91 0 30 77 0 0 chrY 23159250 23159315 -1553764 + AT_rich Low_complexity Low_complexity 1 65 0 22 94 0 0 chrY 23159515 23159579 -1553500 + AT_rich Low_complexity Low_complexity 1 64 0 1977 169 17 8 chrY 23160406 23160761 -1552318 - MLT2A1 LTR ERVL -86 358 1 2474 130 29 0 chrY 23160761 23161170 -1551909 - HERVL-A1 LTR ERVL 0 5654 5234 4362 147 18 28 chrY 23161254 23162111 -1550968 - MER61B-int LTR ERV1 -2958 2259 1409 1819 124 28 25 chrY 23162111 23162420 -1550659 - AluY SINE Alu 0 310 1 4362 147 18 28 chrY 23162420 23162469 -1550610 - MER61B-int LTR ERV1 -3808 1409 1361 1642 131 11 0 chrY 23162464 23162731 -1550348 - MER61B-int LTR ERV1 -4004 1213 944 * 1892 222 21 37 chrY 23162741 23163308 -1549771 - MER61B-int LTR ERV1 -4380 837 280 527 167 48 56 chrY 23163368 23163494 -1549585 - MER61B-int LTR ERV1 -5074 143 19 1496 232 22 11 chrY 23163511 23163635 -1549444 - MER61B LTR ERV1 0 425 304 201 39 0 0 chrY 23163635 23163661 -1549418 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1496 232 22 11 chrY 23163661 23163898 -1549181 - MER61B LTR ERV1 -121 304 60 1474 238 22 12 chrY 23163913 23164405 -1548674 - L1M2 LINE L1 -1745 4401 3905 1930 262 43 17 chrY 23164409 23165461 -1547618 + L1M2 LINE L1 4400 5480 -743 1101 290 12 14 chrY 23165473 23166004 -1547075 - BSR/Beta Satellite Satellite -49 530 1 542 260 24 34 chrY 23166098 23167009 -1546070 - BSR/Beta Satellite Satellite 0 901 1 378 244 60 23 chrY 23167032 23167183 -1545896 - BSR/Beta Satellite Satellite -2 156 1 1098 294 13 4 chrY 23167195 23167960 -1545119 - BSR/Beta Satellite Satellite 0 771 1 1352 259 33 10 chrY 23168012 23168796 -1544283 - BSR/Beta Satellite Satellite -44 801 1 607 281 23 21 chrY 23169107 23169906 -1543173 - BSR/Beta Satellite Satellite 0 800 1 883 289 28 32 chrY 23169999 23170124 -1542955 - BSR/Beta Satellite Satellite -63 1022 898 1986 126 6 28 chrY 23170124 23170441 -1542638 - AluY SINE Alu -1 310 1 883 289 28 32 chrY 23170441 23171025 -1542054 - BSR/Beta Satellite Satellite -187 898 1 550 288 11 20 chrY 23171203 23172141 -1540938 - BSR/Beta Satellite Satellite -43 929 1 428 262 5 10 chrY 23172265 23172396 -1540683 - BSR/Beta Satellite Satellite 0 130 1 318 363 98 3 chrY 23172409 23172704 -1540375 - BSR/Beta Satellite Satellite -48 331 9 1068 294 3 6 chrY 23172718 23173045 -1540034 - BSR/Beta Satellite Satellite -9 370 45 383 135 0 14 chrY 23173146 23173220 -1539859 + (TG)n Simple_repeat Simple_repeat 2 74 0 377 326 9 0 chrY 23173327 23173474 -1539605 - BSR/Beta Satellite Satellite -15 148 1 1409 270 8 3 chrY 23173675 23174108 -1538971 - BSR/Beta Satellite Satellite -49 435 1 457 281 42 27 chrY 23174198 23174684 -1538395 - BSR/Beta Satellite Satellite -4 493 1 581 262 7 28 chrY 23174846 23175209 -1537870 - BSR/Beta Satellite Satellite 0 355 1 887 294 10 4 chrY 23175341 23175782 -1537297 - BSR/Beta Satellite Satellite -47 443 1 540 273 17 35 chrY 23175799 23176879 -1536200 - BSR/Beta Satellite Satellite 0 1060 1 357 319 11 23 chrY 23176974 23177173 -1535906 - BSR/Beta Satellite Satellite 0 196 1 802 258 87 7 chrY 23177197 23177472 -1535607 - BSR/Beta Satellite Satellite -42 337 41 888 271 27 33 chrY 23177507 23178414 -1534665 - BSR/Beta Satellite Satellite -22 901 1 530 272 6 30 chrY 23178744 23179383 -1533696 - BSR/Beta Satellite Satellite -6 623 1 1131 290 12 9 chrY 23179657 23180271 -1532808 - BSR/Beta Satellite Satellite -49 615 1 917 245 21 25 chrY 23180407 23181127 -1531952 - BSR/Beta Satellite Satellite -44 2007 1285 1549 248 77 15 chrY 23181127 23181606 -1531473 + LTR22 LTR ERVK 1 509 0 917 245 21 25 chrY 23181606 23182423 -1530656 - BSR/Beta Satellite Satellite -766 1285 1 915 249 11 34 chrY 23182434 23183213 -1529866 - BSR/Beta Satellite Satellite -3 761 1 700 262 45 35 chrY 23183312 23183602 -1529477 - BSR/Beta Satellite Satellite -64 315 23 588 276 21 17 chrY 23183693 23184621 -1528458 - BSR/Beta Satellite Satellite -1 931 1 418 273 0 0 chrY 23184887 23184986 -1528093 - BSR/Beta Satellite Satellite -43 99 1 771 342 12 0 chrY 23185041 23185360 -1527719 - BSR/Beta Satellite Satellite -48 331 9 865 259 100 10 chrY 23185377 23185666 -1527413 - BSR/Beta Satellite Satellite -9 370 56 253 311 11 11 chrY 23185692 23185782 -1527297 - BSR/Beta Satellite Satellite -46 96 7 1856 148 3 35 chrY 23185800 23186111 -1526968 + AluY SINE Alu 1 301 -10 548 250 34 19 chrY 23186119 23186847 -1526232 - BSR/Beta Satellite Satellite -16 739 1 518 251 13 35 chrY 23187163 23187545 -1525534 - BSR/Beta Satellite Satellite 0 373 1 498 266 3 36 chrY 23187603 23187833 -1525246 - BSR/Beta Satellite Satellite 0 222 1 284 347 8 0 chrY 23187850 23187974 -1525105 - BSR/Beta Satellite Satellite -11 131 7 1250 157 32 16 chrY 23187992 23188241 -1524838 - MER11B LTR ERVK 0 1236 984 7596 96 0 11 chrY 23188241 23189333 -1523746 - HERVK11 LTR ERVK -1349 6604 5525 * 10614 71 11 5 chrY 23189331 23190796 -1522283 - HERVK11 LTR ERVK -3352 4601 3128 4487 88 3 0 chrY 23190796 23191412 -1521667 - HERVK11 LTR ERVK -6171 1782 1165 3476 146 50 97 chrY 23191412 23192305 -1520774 - HERVK11 LTR ERVK -7102 851 1 3694 175 23 49 chrY 23192305 23193314 -1519765 - MER11C LTR ERVK 0 1071 1 1213 284 17 18 chrY 23193324 23194008 -1519071 - BSR/Beta Satellite Satellite -49 683 1 376 278 36 22 chrY 23194083 23194356 -1518723 - BSR/Beta Satellite Satellite -1 276 1 479 254 32 34 chrY 23194442 23195136 -1517943 - BSR/Beta Satellite Satellite 0 692 1 768 319 0 3 chrY 23195187 23195571 -1517508 - BSR/Beta Satellite Satellite -46 382 1 887 302 21 18 chrY 23195638 23195972 -1517107 - BSR/Beta Satellite Satellite -16 363 29 504 269 21 31 chrY 23195995 23196351 -1516728 - BSR/Beta Satellite Satellite 0 352 1 460 268 9 27 chrY 23196426 23196864 -1516215 - BSR/Beta Satellite Satellite 0 429 1 1867 141 0 44 chrY 23196896 23197237 -1515842 - AluSg SINE Alu 0 310 1 1148 287 8 7 chrY 23197247 23198035 -1515044 - BSR/Beta Satellite Satellite -1 788 1 1109 269 19 35 chrY 23198071 23198891 -1514188 - BSR/Beta Satellite Satellite -25 806 1 291 379 8 0 chrY 23198973 23199130 -1513949 - BSR/Beta Satellite Satellite -15 158 1 620 287 22 17 chrY 23199292 23200172 -1512907 - BSR/Beta Satellite Satellite -33 884 1 508 271 15 25 chrY 23200201 23200402 -1512677 - BSR/Beta Satellite Satellite 0 198 1 1036 314 0 0 chrY 23200516 23200812 -1512267 - BSR/Beta Satellite Satellite -58 321 26 1136 268 16 29 chrY 23200915 23201968 -1511111 - BSR/Beta Satellite Satellite -46 1604 547 279 0 0 0 chrY 23201968 23201999 -1511080 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1136 268 16 29 chrY 23201999 23202540 -1510539 - BSR/Beta Satellite Satellite -1103 547 1 747 286 9 3 chrY 23202551 23202736 -1510343 - BSR/Beta Satellite Satellite 0 186 1 1981 171 0 3 chrY 23202784 23203093 -1509986 - AluSg SINE Alu -2 308 1 247 302 94 0 chrY 23203100 23203206 -1509873 - BSR/Beta Satellite Satellite -223 156 41 540 290 14 14 chrY 23203283 23203555 -1509524 - BSR/Beta Satellite Satellite 0 271 1 480 276 77 17 chrY 23203563 23203860 -1509219 - L1 LINE L1 -1311 5537 5223 1496 211 10 16 chrY 23203887 23204195 -1508884 + AluSc SINE Alu 1 306 -3 504 270 101 24 chrY 23204197 23204805 -1508274 - L1 LINE L1 -3271 3577 2932 433 389 58 0 chrY 23204854 23205132 -1507947 - L1 LINE L1 -4347 2502 2209 214 250 0 15 chrY 23205173 23205241 -1507838 + T-rich Low_complexity Low_complexity 3 69 0 341 367 44 24 chrY 23205329 23205577 -1507502 - L1 LINE L1 -4982 1797 1545 189 0 0 0 chrY 23205644 23205665 -1507414 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 21218 61 0 2 chrY 23205688 23209255 -1503824 - L1PA4 LINE L1 -3 6152 2606 572 64 0 0 chrY 23209255 23209333 -1503746 + L1PA4 LINE L1 2527 2604 -3542 1492 246 23 63 chrY 23210114 23210471 -1502608 - LTR32 LTR ERVL -1 470 135 1767 193 3 0 chrY 23210471 23210772 -1502307 - AluSp SINE Alu -11 302 1 1492 246 23 63 chrY 23210772 23210889 -1502190 - LTR32 LTR ERVL -336 135 15 39069 47 23 1 chrY 23213412 23219427 -1493652 + L1PA2 LINE L1 4 6151 -4 25 0 0 0 chrY 23219432 23219457 -1493622 + AT_rich Low_complexity Low_complexity 1 25 0 1627 186 14 7 chrY 23219739 23220029 -1493050 + AluY SINE Alu 1 292 -19 1464 209 50 0 chrY 23221960 23222123 -1490956 - AluSc SINE Alu -12 297 113 200 59 29 0 chrY 23222123 23222157 -1490922 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 1464 209 50 0 chrY 23222157 23222276 -1490803 - AluSc SINE Alu -196 113 1 6082 257 173 2 chrY 23222315 23224028 -1489051 + L1PA12 LINE L1 1 2007 -5574 1378 300 16 5 chrY 23224027 23224410 -1488669 + L1PA13 LINE L1 346 732 -6055 * 1289 262 55 19 chrY 23224427 23224950 -1488129 + L1PA13 LINE L1 2521 3062 -3735 1497 199 0 0 chrY 23226806 23227072 -1486007 + AluSq SINE Alu 9 274 -39 359 20 0 20 chrY 23227081 23227130 -1485949 + (TAAAA)n Simple_repeat Simple_repeat 2 49 0 212 186 17 34 chrY 23227498 23227557 -1485522 + A-rich Low_complexity Low_complexity 3 60 0 317 353 31 0 chrY 23227628 23227852 -1485227 + L1M4c LINE L1 1370 1600 -4784 2692 165 28 12 chrY 23227866 23228447 -1484632 - LTR10E LTR ERV1 -35 598 9 533 280 111 63 chrY 23228548 23229159 -1483920 + L1M4c LINE L1 2463 3102 -3280 1561 223 7 3 chrY 23229171 23229476 -1483603 - AluSc SINE Alu -3 306 1 243 274 0 0 chrY 23229504 23229566 -1483513 + L1 LINE L1 4522 4583 -1563 2121 126 3 3 chrY 23229582 23229892 -1483187 - AluY SINE Alu -1 310 1 919 70 31 0 chrY 23230000 23230128 -1482951 - L1PA4 LINE L1 -4904 1242 1111 32566 53 7 2 chrY 23230128 23234886 -1478193 + L1PA4 LINE L1 1230 6014 -141 201 167 0 0 chrY 23234893 23234929 -1478150 + A-rich Low_complexity Low_complexity 1 36 0 307 274 30 15 chrY 23234929 23235064 -1478015 + L1 LINE L1 4696 4832 -1314 1167 266 19 36 chrY 23235075 23237466 -1475613 + BSR/Beta Satellite Satellite 1 2349 -14 1176 282 21 16 chrY 23237657 23238352 -1474727 + BSR/Beta Satellite Satellite 1 698 0 616 241 25 30 chrY 23238471 23238754 -1474325 + BSR/Beta Satellite Satellite 1 281 0 515 229 71 47 chrY 23238767 23239038 -1474041 + BSR/Beta Satellite Satellite 1 264 -428 1725 131 0 33 chrY 23239038 23239312 -1473767 + AluY SINE Alu 47 311 0 515 229 71 47 chrY 23239312 23239401 -1473678 + BSR/Beta Satellite Satellite 264 649 -43 355 322 6 8 chrY 23239513 23239716 -1473363 + BSR/Beta Satellite Satellite 1 202 -18 1234 275 16 22 chrY 23239734 23240745 -1472334 + BSR/Beta Satellite Satellite 1 1004 -16 598 280 7 102 chrY 23240765 23241069 -1472010 + BSR/Beta Satellite Satellite 5 279 -100 348 278 14 62 chrY 23241149 23241293 -1471786 + BSR/Beta Satellite Satellite 2 138 -4 436 252 31 41 chrY 23241309 23241539 -1471540 + BSR/Beta Satellite Satellite 1 227 -53 30 0 0 0 chrY 23241550 23241580 -1471499 + AT_rich Low_complexity Low_complexity 1 30 0 479 290 25 8 chrY 23241583 23242097 -1470982 + BSR/Beta Satellite Satellite 1 522 -4 506 315 7 0 chrY 23242182 23242383 -1470696 + BSR/Beta Satellite Satellite 1 202 -6 824 288 65 27 chrY 23242492 23242779 -1470300 + BSR/Beta Satellite Satellite 1 297 -49 620 302 9 20 chrY 23242814 23243227 -1469852 + BSR/Beta Satellite Satellite 1 408 -18 588 284 14 30 chrY 23243262 23243576 -1469503 + BSR/Beta Satellite Satellite 1 309 -1 581 272 13 18 chrY 23243591 23243984 -1469095 + BSR/Beta Satellite Satellite 1 391 -21 282 348 35 14 chrY 23244141 23244282 -1468797 + BSR/Beta Satellite Satellite 3 146 -6 1360 277 17 10 chrY 23244371 23245585 -1467494 + BSR/Beta Satellite Satellite 1 1222 -19 1263 319 3 10 chrY 23245604 23246114 -1466965 + BSR/Beta Satellite Satellite 1 506 -2 542 279 24 33 chrY 23246145 23247161 -1465918 + BSR/Beta Satellite Satellite 1 1006 -57 970 296 8 10 chrY 23247395 23248061 -1465018 + BSR/Beta Satellite Satellite 1 664 -21 599 274 12 24 chrY 23248126 23249166 -1463913 + BSR/Beta Satellite Satellite 1 1027 -6 1320 266 15 16 chrY 23249262 23249878 -1463201 + BSR/Beta Satellite Satellite 1 615 -15 698 276 11 33 chrY 23250161 23250870 -1462209 + BSR/Beta Satellite Satellite 1 693 -7 337 350 20 8 chrY 23250916 23251135 -1461944 + BSR/Beta Satellite Satellite 1 221 -1 1023 261 66 32 chrY 23251187 23251511 -1461568 + BSR/Beta Satellite Satellite 1 312 -1121 8345 54 1 0 chrY 23251511 23252476 -1460603 - LTR5 LTR ERVK -3 966 1 1023 261 66 32 chrY 23252476 23252573 -1460506 + BSR/Beta Satellite Satellite 312 1433 0 531 279 2 27 chrY 23252586 23253033 -1460046 + BSR/Beta Satellite Satellite 1 435 -50 1269 271 13 32 chrY 23253047 23253947 -1459132 + BSR/Beta Satellite Satellite 1 883 -35 431 256 55 16 chrY 23253996 23254143 -1458936 + BSR/Beta Satellite Satellite 1 152 -10 661 255 22 15 chrY 23254156 23254744 -1458335 + BSR/Beta Satellite Satellite 1 592 -63 4877 92 3 0 chrY 23254867 23255490 -1457589 - L1PA5 LINE L1 0 6154 5530 35048 106 27 7 chrY 23255493 23260583 -1452496 - L1PA5 LINE L1 -951 5195 3 1246 296 16 20 chrY 23260655 23262234 -1450845 + BSR/Beta Satellite Satellite 1 1571 -4 659 267 7 34 chrY 23262260 23262671 -1450408 + BSR/Beta Satellite Satellite 1 400 -1 584 285 16 23 chrY 23262785 23263528 -1449551 + BSR/Beta Satellite Satellite 1 737 -46 239 286 77 33 chrY 23263575 23263666 -1449413 + BSR/Beta Satellite Satellite 40 134 -18 225 244 0 0 chrY 23263692 23263737 -1449342 - BSR/Beta Satellite Satellite -46 96 52 483 295 17 24 chrY 23263765 23264047 -1449032 - BSR/Beta Satellite Satellite 0 280 1 1205 282 19 0 chrY 23264060 23264487 -1448592 - BSR/Beta Satellite Satellite -40 435 1 282 354 13 4 chrY 23264560 23264706 -1448373 - BSR/Beta Satellite Satellite -6 147 1 572 284 13 24 chrY 23264803 23265603 -1447476 - BSR/Beta Satellite Satellite -1 791 1 355 239 22 109 chrY 23265691 23265829 -1447250 - BSR/Beta Satellite Satellite 0 142 17 417 196 131 0 chrY 23265829 23265936 -1447143 - AluSp/q SINE Alu -1 312 192 450 304 4 21 chrY 23265948 23266133 -1446946 - BSR/Beta Satellite Satellite -15 181 1 890 258 39 78 chrY 23266156 23266513 -1446566 - BSR/Beta Satellite Satellite -11 368 26 680 261 23 32 chrY 23266635 23267609 -1445470 - BSR/Beta Satellite Satellite 0 964 1 462 261 9 21 chrY 23267729 23267868 -1445211 - BSR/Beta Satellite Satellite 0 137 1 733 298 80 0 chrY 23267936 23268174 -1444905 - BSR/Beta Satellite Satellite -122 257 1 1261 286 16 17 chrY 23268187 23269418 -1443661 - BSR/Beta Satellite Satellite -44 1228 1 320 317 20 20 chrY 23269533 23269675 -1443404 - BSR/Beta Satellite Satellite -3 142 1 547 266 12 44 chrY 23269840 23270447 -1442632 - BSR/Beta Satellite Satellite 0 587 1 959 313 11 17 chrY 23270573 23271310 -1441769 - BSR/Beta Satellite Satellite -25 732 1 478 272 25 0 chrY 23271405 23271582 -1441497 - BSR/Beta Satellite Satellite -3 181 1 4168 140 174 16 chrY 23271603 23272558 -1440521 - MER11B LTR ERVK -23 1213 1 621 255 19 28 chrY 23272559 23273350 -1439729 - BSR/Beta Satellite Satellite -4 783 1 509 263 19 19 chrY 23273361 23273568 -1439511 - BSR/Beta Satellite Satellite -4 206 1 1183 297 17 7 chrY 23273802 23274405 -1438674 - BSR/Beta Satellite Satellite -25 609 1 578 246 21 30 chrY 23274504 23275422 -1437657 - BSR/Beta Satellite Satellite 0 908 1 1205 294 12 19 chrY 23275435 23276086 -1436993 - BSR/Beta Satellite Satellite -44 646 1 365 197 0 0 chrY 23276136 23276197 -1436882 - BSR/Beta Satellite Satellite -40 339 279 1953 162 0 0 chrY 23276207 23276515 -1436564 + AluY SINE Alu 1 308 -3 25 0 0 0 chrY 23276515 23276540 -1436539 + AT_rich Low_complexity Low_complexity 1 25 0 743 266 21 21 chrY 23276560 23277122 -1435957 - BSR/Beta Satellite Satellite -2 562 1 293 281 40 48 chrY 23277123 23277351 -1435728 - L1M4 LINE L1 -1304 5078 4852 1316 176 0 127 chrY 23277477 23277801 -1435278 + AluSc SINE Alu 1 283 -16 390 21 0 0 chrY 23277801 23277848 -1435231 + (CA)n Simple_repeat Simple_repeat 2 48 0 557 276 148 17 chrY 23277852 23278273 -1434806 - L1M4 LINE L1 -3312 3070 2594 32557 91 10 2 chrY 23278280 23284405 -1428674 + L1PA5 LINE L1 2 6153 -1 251 282 19 0 chrY 23284457 23284560 -1428519 - L1M4 LINE L1 -3826 2556 2452 497 348 19 3 chrY 23284584 23284894 -1428185 - L1M4 LINE L1 -4712 1672 1358 233 235 0 85 chrY 23284917 23285070 -1428009 + T-rich Low_complexity Low_complexity 2 141 0 3439 286 192 30 chrY 23285186 23286842 -1426237 - L1PA13 LINE L1 -4525 2262 339 * 5300 268 7 23 chrY 23286840 23288596 -1424483 - L1PA12 LINE L1 -5577 2004 1 30 0 0 0 chrY 23288613 23288643 -1424436 + AT_rich Low_complexity Low_complexity 1 30 0 1159 191 37 0 chrY 23289813 23290028 -1423051 + AluSq SINE Alu 5 227 -86 600 248 0 0 chrY 23291371 23291496 -1421583 + FLAM_C SINE Alu 1 125 -8 415 167 22 2 chrY 23291500 23291680 -1421399 + AluSp SINE Alu 75 296 -6 * 1462 233 3 39 chrY 23291674 23292005 -1421074 + LTR32 LTR ERVL 112 430 -41 1297 242 44 34 chrY 23292866 23293164 -1419915 + AluSx SINE Alu 2 302 0 204 256 49 0 chrY 23293577 23293659 -1419420 + A-rich Low_complexity Low_complexity 5 90 0 202 238 20 14 chrY 23293670 23293817 -1419262 + A-rich Low_complexity Low_complexity 3 150 0 214 85 21 43 chrY 23293834 23293881 -1419198 + (TAAAAA)n Simple_repeat Simple_repeat 2 47 0 193 138 17 17 chrY 23294027 23294085 -1418994 + A-rich Low_complexity Low_complexity 2 59 0 453 309 32 14 chrY 23294114 23294334 -1418745 + L1 LINE L1 2647 2870 -3276 2428 207 49 27 chrY 23294392 23294947 -1418132 + LTR22 LTR ERVK 1 567 -13 1511 146 0 66 chrY 23294991 23295279 -1417800 + HERVK22 LTR ERVK 9 277 -6560 4408 118 106 86 chrY 23295284 23296094 -1416985 + LTR12 LTR ERV1 1 826 0 27369 113 14 10 chrY 23296095 23298550 -1414529 + Harlequin LTR ERV1 43 2485 -4453 2819 7 0 0 chrY 23298550 23298852 -1414227 + AluYa5 SINE Alu 1 302 -9 27369 113 14 10 chrY 23298852 23301203 -1411876 + Harlequin LTR ERV1 2485 4944 -1994 810 103 291 0 chrY 23301204 23301438 -1411641 + Harlequin LTR ERV1 840 1141 -5755 6276 116 6 0 chrY 23301443 23302332 -1410747 + Harlequin LTR ERV1 7506 8399 0 1500 141 99 11 chrY 23302332 23302710 -1410369 + LTR12 LTR ERV1 1 2032 -406 299 256 11 0 chrY 23302711 23302801 -1410278 + LTR30 LTR ERV1 553 643 -79 639 168 10 0 chrY 23302801 23302902 -1410177 + LTR12 LTR ERV1 613 714 0 2015 219 36 0 chrY 23302912 23303305 -1409774 + HERVK22 LTR ERVK 289 695 -6142 570 252 58 0 chrY 23303700 23303839 -1409240 + HERVK22 LTR ERVK 2327 2473 -4364 * 5214 195 40 27 chrY 23303834 23305634 -1407445 + HERVK22 LTR ERVK 2027 3802 -3035 3668 30 0 0 chrY 23305634 23306041 -1407038 + L1PA3 LINE L1 5748 6154 -1 5214 195 40 27 chrY 23306041 23306714 -1406365 + HERVK22 LTR ERVK 3802 6837 0 2879 194 24 26 chrY 23306716 23307292 -1405787 + LTR22 LTR ERVK 3 577 -3 216 86 0 0 chrY 23307385 23307420 -1405659 + (TTTTTG)n Simple_repeat Simple_repeat 3 37 0 1302 232 4 4 chrY 23307447 23307719 -1405360 - AluJb SINE Alu -27 285 14 481 263 45 20 chrY 23307772 23307970 -1405109 + L1M4 LINE L1 4672 4874 -1272 2169 194 23 44 chrY 23307977 23308411 -1404668 - MER61B LTR ERV1 0 425 1 1685 201 18 18 chrY 23308411 23308754 -1404325 - MER61B-int LTR ERV1 0 5217 4875 776 57 9 0 chrY 23308756 23308862 -1404217 + (GAAA)n Simple_repeat Simple_repeat 1 107 0 9055 183 17 14 chrY 23308864 23311468 -1401611 - MER61B-int LTR ERV1 -399 4818 2139 657 324 22 22 chrY 23311468 23311746 -1401333 - BSR/Beta Satellite Satellite -81 298 21 514 295 13 27 chrY 23311836 23312117 -1400962 - BSR/Beta Satellite Satellite 0 276 1 543 273 11 27 chrY 23312128 23312950 -1400129 - BSR/Beta Satellite Satellite 0 808 1 1150 310 15 4 chrY 23312966 23313625 -1399454 - BSR/Beta Satellite Satellite -19 666 1 697 245 14 22 chrY 23313639 23314088 -1398991 - BSR/Beta Satellite Satellite 0 445 1 735 290 62 29 chrY 23314101 23314588 -1398491 - BSR/Beta Satellite Satellite -7 502 1 350 338 23 0 chrY 23314622 23314755 -1398324 - BSR/Beta Satellite Satellite -15 137 2 225 184 197 26 chrY 23314829 23314905 -1398174 - BSR/Beta Satellite Satellite 0 152 64 546 269 6 33 chrY 23314963 23315527 -1397552 - BSR/Beta Satellite Satellite 0 548 1 294 321 28 0 chrY 23315544 23315653 -1397426 - BSR/Beta Satellite Satellite -4 148 37 227 356 29 0 chrY 23315684 23315788 -1397291 - BSR/Beta Satellite Satellite -33 109 3 1368 282 8 9 chrY 23315843 23316425 -1396654 - BSR/Beta Satellite Satellite -49 581 1 562 262 21 24 chrY 23316520 23317578 -1395501 - BSR/Beta Satellite Satellite 0 1054 1 596 321 0 2 chrY 23317639 23317950 -1395129 - BSR/Beta Satellite Satellite -44 310 1 1119 265 24 21 chrY 23318008 23318336 -1394743 - BSR/Beta Satellite Satellite -16 363 35 566 242 9 61 chrY 23318371 23319051 -1394028 - BSR/Beta Satellite Satellite 0 644 1 669 246 46 8 chrY 23319064 23319252 -1393827 - BSR/Beta Satellite Satellite -27 195 1 1034 300 15 2 chrY 23319269 23319732 -1393347 - BSR/Beta Satellite Satellite -44 468 1 1193 273 22 26 chrY 23319748 23321040 -1392039 - BSR/Beta Satellite Satellite -44 1287 1 323 309 36 26 chrY 23321053 23321260 -1391819 - BSR/Beta Satellite Satellite -15 209 1 676 248 35 26 chrY 23321486 23322828 -1390251 - BSR/Beta Satellite Satellite -14 1353 1 1348 269 33 11 chrY 23322947 23324646 -1388433 - BSR/Beta Satellite Satellite -44 1736 1 369 357 14 0 chrY 23324719 23324888 -1388191 - BSR/Beta Satellite Satellite -3 171 1 608 282 9 22 chrY 23324973 23325672 -1387407 - BSR/Beta Satellite Satellite -2 689 1 765 298 10 49 chrY 23325714 23326304 -1386775 - BSR/Beta Satellite Satellite -49 1043 196 1747 155 0 4 chrY 23326304 23326611 -1386468 + AluSc SINE Alu 3 308 0 765 298 10 49 chrY 23326611 23326800 -1386279 - BSR/Beta Satellite Satellite -896 196 1 650 275 12 19 chrY 23326918 23327998 -1385081 - BSR/Beta Satellite Satellite 0 1072 1 363 263 10 38 chrY 23328013 23328179 -1384900 - BSR/Beta Satellite Satellite -32 161 1 983 311 23 12 chrY 23328191 23328850 -1384229 - BSR/Beta Satellite Satellite -9 666 1 674 250 2 40 chrY 23328921 23329272 -1383807 - BSR/Beta Satellite Satellite 0 337 1 1012 289 17 2 chrY 23329331 23329701 -1383378 - BSR/Beta Satellite Satellite -25 375 1 386 301 33 16 chrY 23329795 23330000 -1383079 - BSR/Beta Satellite Satellite -3 208 1 235 281 0 0 chrY 23330048 23330112 -1382967 - BSR/Beta Satellite Satellite -64 78 15 1423 273 17 21 chrY 23330149 23331643 -1381436 - BSR/Beta Satellite Satellite -49 1486 1 613 244 18 8 chrY 23331746 23332415 -1380664 - BSR/Beta Satellite Satellite 0 675 1 619 256 12 15 chrY 23332461 23332720 -1380359 - BSR/Beta Satellite Satellite -7 258 1 1278 287 12 10 chrY 23332757 23333964 -1379115 - BSR/Beta Satellite Satellite 0 1209 1 471 279 9 8 chrY 23334010 23334192 -1378887 - BSR/Beta Satellite Satellite -45 182 1 2278 208 27 29 chrY 23334192 23334711 -1378368 + LTR22 LTR ERVK 1 518 -62 261 222 0 19 chrY 23334729 23334783 -1378296 - BSR/Beta Satellite Satellite -326 53 1 313 335 39 11 chrY 23334801 23335054 -1378025 - BSR/Beta Satellite Satellite -3 260 1 604 257 8 28 chrY 23335173 23335812 -1377267 - BSR/Beta Satellite Satellite 0 626 1 1308 305 10 12 chrY 23335996 23336700 -1376379 - BSR/Beta Satellite Satellite -49 702 1 629 257 18 38 chrY 23336832 23337833 -1375246 - BSR/Beta Satellite Satellite 0 981 1 1153 307 6 3 chrY 23337893 23338557 -1374522 - BSR/Beta Satellite Satellite -3 666 1 1112 279 23 30 chrY 23338625 23339583 -1373496 - BSR/Beta Satellite Satellite -15 1343 92 1857 122 47 4 chrY 23339583 23339886 -1373193 - AluSq SINE Alu 0 313 1 1112 279 23 30 chrY 23339886 23339978 -1373101 - BSR/Beta Satellite Satellite -1266 92 1 259 295 49 16 chrY 23340079 23340201 -1372878 - BSR/Beta Satellite Satellite -16 126 1 654 249 15 42 chrY 23340276 23340778 -1372301 - BSR/Beta Satellite Satellite 0 488 1 466 300 10 35 chrY 23340845 23341265 -1371814 - BSR/Beta Satellite Satellite -4 409 1 1298 305 7 10 chrY 23341276 23341680 -1371399 - BSR/Beta Satellite Satellite -49 402 1 591 240 30 32 chrY 23341777 23342231 -1370848 - BSR/Beta Satellite Satellite -3 452 1 2296 106 0 3 chrY 23342254 23342566 -1370513 + AluY SINE Alu 1 311 0 643 256 13 25 chrY 23342571 23343163 -1369916 - BSR/Beta Satellite Satellite 0 584 1 1042 309 4 4 chrY 23343224 23343684 -1369395 - BSR/Beta Satellite Satellite -44 460 1 1099 273 9 19 chrY 23343700 23344022 -1369057 - BSR/Beta Satellite Satellite -16 363 45 304 304 11 11 chrY 23344037 23344129 -1368950 - BSR/Beta Satellite Satellite -46 96 5 1245 272 24 32 chrY 23344143 23345766 -1367313 - BSR/Beta Satellite Satellite -1 1609 1 538 289 15 18 chrY 23345836 23346161 -1366918 - BSR/Beta Satellite Satellite -3 324 1 1346 277 32 3 chrY 23346286 23346700 -1366379 - BSR/Beta Satellite Satellite -45 425 1 274 380 0 0 chrY 23346753 23346910 -1366169 - BSR/Beta Satellite Satellite -12 157 1 547 254 27 40 chrY 23347019 23347717 -1365362 - BSR/Beta Satellite Satellite 0 689 1 520 281 15 31 chrY 23348034 23348323 -1364756 - BSR/Beta Satellite Satellite -9 284 1 742 258 22 34 chrY 23348338 23349263 -1363816 - BSR/Beta Satellite Satellite 0 913 1 1359 307 16 16 chrY 23349307 23350011 -1363068 - BSR/Beta Satellite Satellite -3 704 1 559 270 9 36 chrY 23350065 23350788 -1362291 - BSR/Beta Satellite Satellite 0 703 1 535 287 9 26 chrY 23350984 23351308 -1361771 - BSR/Beta Satellite Satellite -4 318 1 1410 257 0 0 chrY 23351371 23351667 -1361412 - BSR/Beta Satellite Satellite -49 330 35 1308 281 21 12 chrY 23351774 23353682 -1359397 - BSR/Beta Satellite Satellite -13 1923 1 535 276 17 33 chrY 23353753 23354594 -1358485 - BSR/Beta Satellite Satellite 0 827 1 189 178 0 0 chrY 23354619 23354664 -1358415 + T-rich Low_complexity Low_complexity 4 48 0 1292 299 22 7 chrY 23354668 23355467 -1357612 - BSR/Beta Satellite Satellite -3 811 1 1462 266 22 16 chrY 23355543 23356367 -1356712 - BSR/Beta Satellite Satellite -44 828 1 355 341 18 11 chrY 23356387 23356605 -1356474 - BSR/Beta Satellite Satellite -14 219 1 622 261 18 33 chrY 23356775 23357385 -1355694 - BSR/Beta Satellite Satellite 0 600 1 247 330 11 0 chrY 23357451 23357539 -1355540 - BSR/Beta Satellite Satellite -11 131 43 591 261 5 36 chrY 23357608 23357868 -1355211 - BSR/Beta Satellite Satellite 0 252 1 1337 294 5 7 chrY 23357944 23358281 -1354798 - BSR/Beta Satellite Satellite -49 336 1 1087 255 16 36 chrY 23358379 23360267 -1352812 - BSR/Beta Satellite Satellite -44 1849 1 1120 309 22 18 chrY 23360339 23361098 -1351981 - BSR/Beta Satellite Satellite -25 761 1 529 274 18 29 chrY 23361163 23362257 -1350822 - BSR/Beta Satellite Satellite 0 1082 1 1171 262 46 19 chrY 23362323 23363918 -1349161 - BSR/Beta Satellite Satellite -44 1638 1 235 143 0 24 chrY 23363936 23363978 -1349101 - BSR/Beta Satellite Satellite -18 361 321 271 359 28 7 chrY 23364005 23364147 -1348932 - BSR/Beta Satellite Satellite -6 146 2 595 259 13 29 chrY 23364213 23364929 -1348150 - BSR/Beta Satellite Satellite -2 704 1 331 373 0 0 chrY 23365074 23365192 -1347887 - BSR/Beta Satellite Satellite -21 121 4 577 243 21 43 chrY 23365268 23365483 -1347596 - BSR/Beta Satellite Satellite -4 210 1 792 336 13 10 chrY 23365530 23365828 -1347251 - BSR/Beta Satellite Satellite -60 319 21 546 276 33 14 chrY 23365916 23367036 -1346043 - BSR/Beta Satellite Satellite 0 1141 1 291 319 11 0 chrY 23367177 23367271 -1345808 - BSR/Beta Satellite Satellite -47 95 1 1137 294 10 3 chrY 23367381 23367985 -1345094 - BSR/Beta Satellite Satellite -9 608 1 946 253 95 16 chrY 23368055 23368822 -1344257 - BSR/Beta Satellite Satellite -44 827 1 305 292 19 14 chrY 23368914 23369039 -1344040 - BSR/Beta Satellite Satellite -3 125 1 231 237 68 0 chrY 23369132 23369191 -1343888 - BSR/Beta Satellite Satellite -15 137 75 501 286 27 29 chrY 23369212 23370001 -1343078 - BSR/Beta Satellite Satellite -21 787 1 1061 289 7 17 chrY 23370088 23370725 -1342354 - BSR/Beta Satellite Satellite -49 630 1 1225 284 13 22 chrY 23370828 23372756 -1340323 - BSR/Beta Satellite Satellite -3 1912 1 539 264 24 37 chrY 23372789 23373111 -1339968 - BSR/Beta Satellite Satellite -8 317 1 332 324 53 10 chrY 23373120 23373419 -1339660 - L1 LINE L1 -1314 4832 4521 766 175 54 60 chrY 23373448 23373614 -1339465 + AluSg/x SINE Alu 138 302 -10 888 282 93 44 chrY 23373615 23374250 -1338829 - L1M4c LINE L1 -3272 3110 2445 482 309 39 25 chrY 23374275 23374560 -1338519 - L1M4c LINE L1 -4726 1658 1370 236 175 25 62 chrY 23374626 23374706 -1338373 + T-rich Low_complexity Low_complexity 3 79 0 651 189 0 0 chrY 23374855 23374961 -1338118 - AluSq/x SINE Alu -205 107 2 1645 253 102 22 chrY 23376330 23376774 -1336305 - L1P LINE L1 -3635 2511 2005 277 23 0 45 chrY 23376774 23376818 -1336261 + (TTTTG)n Simple_repeat Simple_repeat 3 44 0 1645 253 102 22 chrY 23376818 23376973 -1336106 - L1P LINE L1 -4141 2005 1864 3433 111 22 4 chrY 23376973 23377467 -1335612 + MER11B LTR ERVK 1 503 -733 207 100 0 0 chrY 23377680 23377710 -1335369 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 1462 218 10 0 chrY 23377717 23378015 -1335064 - AluSp SINE Alu -11 302 2 759 336 27 5 chrY 23378120 23378483 -1334596 + MER52A LTR ERV1 923 1249 -506 1573 243 90 24 chrY 23379517 23380209 -1332870 - L1M4c LINE L1 -4568 2078 1329 1683 174 11 0 chrY 23380209 23380473 -1332606 - AluSc SINE Alu -22 287 21 1573 243 90 24 chrY 23380473 23380511 -1332568 - L1M4c LINE L1 -5317 1329 1295 327 255 112 27 chrY 23380629 23380817 -1332262 - L1M4c LINE L1 -3886 2498 2295 21 89 0 0 chrY 23380929 23380985 -1332094 + AT_rich Low_complexity Low_complexity 1 56 0 522 40 27 0 chrY 23381974 23382048 -1331031 + L1PA6 LINE L1 6078 6153 -1 351 333 45 50 chrY 23382133 23382334 -1330745 - L2 LINE L2 -352 2962 2763 282 262 0 0 chrY 23382365 23382426 -1330653 + MER20 DNA MER1_type 90 150 -69 1943 96 9 68 chrY 23382674 23382998 -1330081 + AluY SINE Alu 1 305 -6 505 127 0 0 chrY 23383393 23383472 -1329607 - HERVL LTR ERVL -4866 788 710 2432 272 19 7 chrY 23383473 23384057 -1329022 + MER52A LTR ERV1 1161 1751 -4 512 208 264 0 chrY 23384252 23384377 -1328702 - AluSq SINE Alu -19 294 137 1699 180 0 27 chrY 23384686 23384811 -1328268 + AluSq SINE Alu 2 129 -184 309 51 0 0 chrY 23384811 23384850 -1328229 + (CA)n Simple_repeat Simple_repeat 2 40 0 1699 180 0 27 chrY 23384850 23385024 -1328055 + AluSq SINE Alu 129 293 -20 36 40 0 0 chrY 23385164 23385214 -1327865 + AT_rich Low_complexity Low_complexity 1 50 0 898 250 108 4 chrY 23385394 23385626 -1327453 - AluSp SINE Alu -57 256 1 29 70 0 0 chrY 23385726 23385783 -1327296 + AT_rich Low_complexity Low_complexity 1 57 0 383 266 11 21 chrY 23390616 23390710 -1322369 + AluJb SINE Alu 89 181 -121 25 51 0 0 chrY 23390947 23390986 -1322093 + AT_rich Low_complexity Low_complexity 1 39 0 763 282 20 5 chrY 23391110 23391312 -1321767 + AluJ SINE Alu 1 205 -107 210 160 0 0 chrY 23391361 23391411 -1321668 + (CA)n Simple_repeat Simple_repeat 1 50 0 2001 261 8 4 chrY 23391913 23392395 -1320684 - MER1A DNA MER1_type -18 511 28 379 270 40 10 chrY 23392408 23392508 -1320571 + AluJ SINE Alu 198 300 -2 21 36 0 0 chrY 23392511 23392539 -1320540 + AT_rich Low_complexity Low_complexity 1 28 0 1171 189 9 0 chrY 23393412 23393624 -1319455 + AluSq SINE Alu 81 294 -19 219 288 62 0 chrY 23393629 23393709 -1319370 + MIR SINE MIR 177 261 -1 661 273 36 0 chrY 23393982 23394176 -1318903 - MER2 DNA MER2_type -138 207 7 22 35 0 0 chrY 23394273 23394302 -1318777 + AT_rich Low_complexity Low_complexity 1 29 0 2727 16 0 0 chrY 23394928 23395231 -1317848 - AluYa5 SINE Alu -8 303 1 23 78 0 0 chrY 23395513 23395564 -1317515 + AT_rich Low_complexity Low_complexity 1 51 0 1397 224 21 0 chrY 23396158 23396444 -1316635 - AluSx SINE Alu -16 296 5 315 0 0 0 chrY 23396890 23396925 -1316154 + (CA)n Simple_repeat Simple_repeat 2 36 0 183 200 18 27 chrY 23397173 23397283 -1315796 + (TATATG)n Simple_repeat Simple_repeat 6 114 0 259 194 42 0 chrY 23397313 23397533 -1315546 + (TA)n Simple_repeat Simple_repeat 1 229 0 38818 89 2 4 chrY 23397533 23403675 -1309404 - L1PA5 LINE L1 -9 6145 11 1468 204 36 0 chrY 23404253 23404532 -1308547 + AluSx SINE Alu 1 289 -23 1156 299 74 21 chrY 23405100 23405612 -1307467 + L1MDa LINE L1 35 573 -5967 404 344 82 39 chrY 23405592 23405871 -1307208 + L1MDa LINE L1 781 1071 -5469 * 871 219 18 0 chrY 23405894 23406056 -1307023 - MER52C LTR ERV1 0 1278 1114 571 159 35 0 chrY 23406056 23406169 -1306910 + LTR22 LTR ERVK 1 117 -463 1660 189 22 6 chrY 23406186 23406503 -1306576 + LTR22 LTR ERVK 255 576 -4 636 192 149 48 chrY 23406539 23406747 -1306332 - MER52C LTR ERV1 -160 1118 890 1228 278 65 43 chrY 23406751 23407556 -1305523 - L1M4 LINE L1 -942 5204 4383 1688 173 17 7 chrY 23407895 23408190 -1304889 + AluSp SINE Alu 1 298 -15 992 223 17 52 chrY 23408294 23408639 -1304440 - L1MDa LINE L1 -6143 397 65 2467 165 71 4 chrY 23408840 23409319 -1303760 - MER9 LTR ERVK 0 511 1 12359 139 37 44 chrY 23409319 23411479 -1301600 - HERVK9 LTR ERVK 0 5916 3773 7981 140 49 48 chrY 23411470 23412140 -1300939 - HERVK9 LTR ERVK -4419 1497 829 * 201 200 0 83 chrY 23412140 23412200 -1300879 - MER5B DNA MER1_type -69 109 55 7981 140 49 48 chrY 23412200 23412966 -1300113 - HERVK9 LTR ERVK -5087 829 1 688 274 68 9 chrY 23412966 23413023 -1300056 - MER9 LTR ERVK 0 511 459 225 0 0 0 chrY 23413023 23413048 -1300031 + (CA)n Simple_repeat Simple_repeat 2 26 0 688 274 68 9 chrY 23413048 23413378 -1299701 - MER9 LTR ERVK -52 459 72 417 85 34 0 chrY 23413481 23413540 -1299539 - MER9 LTR ERVK -450 61 1 251 164 19 182 chrY 23414758 23414917 -1298162 - MER53 DNA DNA -32 157 25 * 277 211 42 0 chrY 23414859 23414930 -1298149 + MER53 DNA DNA 115 188 -1 245 167 103 0 chrY 23415298 23415376 -1297703 + (ATTTG)n Simple_repeat Simple_repeat 3 88 0 24 32 0 0 chrY 23415854 23415885 -1297194 + AT_rich Low_complexity Low_complexity 1 31 0 1852 133 3 3 chrY 23418197 23418482 -1294597 + AluY SINE Alu 27 311 0 1080 211 59 88 chrY 23419537 23419911 -1293168 - MLT1A1 LTR MaLR 0 365 3 21 36 0 0 chrY 23420694 23420722 -1292357 + AT_rich Low_complexity Low_complexity 1 28 0 387 0 0 0 chrY 23422248 23422291 -1290788 + (TTA)n Simple_repeat Simple_repeat 2 44 0 1410 184 8 0 chrY 23422291 23422530 -1290549 - AluSg SINE Alu -36 274 34 182 309 100 36 chrY 23422749 23422859 -1290220 + L2 LINE L2 3170 3286 -27 2717 203 66 7 chrY 23423166 23423727 -1289352 - LTR4 LTR ERV1 -2 594 1 16295 159 29 14 chrY 23423727 23426499 -1286580 - HERV3 LTR ERV1 0 8426 5616 31805 175 15 9 chrY 23426501 23431872 -1281207 - HERV3 LTR ERV1 -3024 5402 1 699 216 0 0 chrY 23431873 23431998 -1281081 - LTR4 LTR ERV1 0 596 472 600 322 17 13 chrY 23432036 23432266 -1280813 - L1MDa LINE L1 -6191 349 119 228 301 0 32 chrY 23432632 23432725 -1280354 + MIR SINE MIR 124 213 -49 2380 74 0 7 chrY 23433575 23433874 -1279205 - AluY SINE Alu -14 297 1 320 162 13 193 chrY 23433949 23434177 -1278902 + MER53 DNA DNA 2 188 -1 21 0 0 0 chrY 23434975 23434996 -1278083 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chrY 23436998 23437021 -1276058 + AT_rich Low_complexity Low_complexity 1 23 0 855 243 64 94 chrY 23438478 23438852 -1274227 - MLT1A1 LTR MaLR 0 365 3 209 247 11 34 chrY 23441003 23441092 -1271987 + CT-rich Low_complexity Low_complexity 4 90 0 258 106 0 0 chrY 23441815 23441862 -1271217 + (T)n Simple_repeat Simple_repeat 1 47 0 259 289 60 0 chrY 23443417 23443500 -1269579 + L2 LINE L2 3206 3293 -20 8553 61 4 2 chrY 23443995 23445884 -1267195 - L1PA5 LINE L1 -1 6153 4261 10044 35 0 0 chrY 23445884 23447176 -1265903 - L1P1 LINE L1 -701 5454 4163 1888 122 4 0 chrY 23447176 23447438 -1265641 - AluY SINE Alu -2 309 47 196 234 39 104 chrY 23447993 23448070 -1265009 - MIR SINE MIR -38 224 153 888 166 0 0 chrY 23448293 23448432 -1264647 + AluSg SINE Alu 1 139 -171 14944 96 3 34 chrY 23448432 23450628 -1262451 + L1PA4 LINE L1 9 2137 -4009 5410 70 5 7 chrY 23450617 23451494 -1261585 + L1PA4 LINE L1 5101 5979 -176 * 21 36 0 0 chrY 23451795 23451823 -1261256 + AT_rich Low_complexity Low_complexity 1 28 0 3646 17 0 5 chrY 23452177 23452591 -1260488 - L1PA2 LINE L1 -377 5778 5365 3178 34 0 0 chrY 23452591 23452968 -1260111 + L1PA2 LINE L1 5776 6155 0 180 0 0 0 chrY 23452975 23452995 -1260084 + (CA)n Simple_repeat Simple_repeat 1 20 0 229 244 0 98 chrY 23453510 23453592 -1259487 - MER20 DNA MER1_type -73 146 73 327 315 54 8 chrY 23453654 23453784 -1259295 + L2 LINE L2 2823 2958 -355 21 36 0 0 chrY 23454758 23454786 -1258293 + AT_rich Low_complexity Low_complexity 1 28 0 382 309 138 20 chrY 23454826 23455072 -1258007 + L1M4 LINE L1 976 1250 -5292 465 120 13 0 chrY 23455084 23455159 -1257920 + LTR15 LTR ERV1 1 76 -417 2169 113 8 7 chrY 23455161 23455369 -1257710 + HERV15 LTR ERV1 6770 6976 -1759 200 33 0 33 chrY 23455369 23455399 -1257680 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2169 113 8 7 chrY 23455399 23455910 -1257169 + HERV15 LTR ERV1 6976 7642 -1093 848 107 16 0 chrY 23455912 23456033 -1257046 + LTR15 LTR ERV1 355 477 -16 2876 168 25 25 chrY 23456702 23457297 -1255782 + L1PA10 LINE L1 5390 5984 -184 915 130 7 0 chrY 23457293 23457431 -1255648 + L1P LINE L1 1 139 -6007 * 17839 53 1 1 chrY 23457431 23460492 -1252587 + L1PA4 LINE L1 3085 6155 0 935 173 60 0 chrY 23460501 23460669 -1252410 + AluSg/x SINE Alu 120 297 -15 1860 202 71 41 chrY 23460687 23461196 -1251883 - LTR61 LTR ERV1 0 595 72 522 258 0 8 chrY 23461216 23461344 -1251735 - HERV3 LTR ERV1 -17 8409 8283 6756 270 17 16 chrY 23461428 23464106 -1248973 - HERV3 LTR ERV1 -3666 4760 1986 4943 267 40 14 chrY 23464104 23465368 -1247711 - HERV3 LTR ERV1 -6768 1658 363 * 1771 237 0 13 chrY 23465435 23465810 -1247269 - HERV3 LTR ERV1 -8052 374 5 1261 188 40 82 chrY 23465814 23466191 -1246888 - LTR61 LTR ERV1 0 595 235 1622 197 0 25 chrY 23466414 23466734 -1246345 + AluSx SINE Alu 1 312 0 194 304 36 0 chrY 23468427 23468483 -1244596 - MIR SINE MIR -1 261 204 528 237 27 94 chrY 23468496 23468720 -1244359 + MER46C DNA MER2_type 1 209 -129 335 315 54 8 chrY 23518914 23519044 -1194035 + L2 LINE L2 2824 2959 -355 21 36 0 0 chrY 23520018 23520046 -1193033 + AT_rich Low_complexity Low_complexity 1 28 0 380 309 138 20 chrY 23520086 23520332 -1192747 + L1M4 LINE L1 976 1250 -5292 442 120 13 0 chrY 23520344 23520419 -1192660 + LTR15 LTR ERV1 1 76 -417 2055 113 8 7 chrY 23520421 23520629 -1192450 + HERV15 LTR ERV1 6770 6976 -1759 200 33 0 33 chrY 23520629 23520659 -1192420 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2055 113 8 7 chrY 23520659 23521170 -1191909 + HERV15 LTR ERV1 6976 7642 -1093 804 107 16 0 chrY 23521172 23521293 -1191786 + LTR15 LTR ERV1 355 477 -16 2693 168 25 25 chrY 23521962 23522557 -1190522 + L1PA10 LINE L1 5390 5984 -184 863 130 7 0 chrY 23522553 23522691 -1190388 + L1P LINE L1 1 139 -6007 * 17801 53 1 1 chrY 23522691 23525752 -1187327 + L1PA4 LINE L1 3085 6155 0 954 173 60 0 chrY 23525761 23525929 -1187150 + AluSg/x SINE Alu 118 295 -15 1736 198 71 41 chrY 23525947 23526456 -1186623 - LTR61 LTR ERV1 0 595 72 491 258 0 8 chrY 23526476 23526604 -1186475 - HERV3 LTR ERV1 -17 8409 8283 6263 271 17 16 chrY 23526688 23529366 -1183713 - HERV3 LTR ERV1 -3666 4760 1986 4528 267 40 14 chrY 23529364 23530628 -1182451 - HERV3 LTR ERV1 -6768 1658 363 * 1639 237 0 13 chrY 23530695 23531070 -1182009 - HERV3 LTR ERV1 -8052 374 5 1147 191 40 82 chrY 23531074 23531451 -1181628 - LTR61 LTR ERV1 0 595 235 1658 197 0 25 chrY 23531674 23531994 -1181085 + AluSx SINE Alu 1 312 0 193 304 36 0 chrY 23533687 23533743 -1179336 - MIR SINE MIR -1 261 204 474 232 27 96 chrY 23533760 23533980 -1179099 + MER46C DNA MER2_type 5 209 -129 191 304 157 10 chrY 23534063 23534165 -1178914 - MIR SINE MIR -82 180 64 513 243 145 38 chrY 23534636 23534871 -1178208 - MIR SINE MIR -1 261 2 21 36 0 0 chrY 23536142 23536170 -1176909 + AT_rich Low_complexity Low_complexity 1 28 0 235 342 114 11 chrY 23536917 23537101 -1175978 + L3 LINE CR1 195 397 -1180 369 111 0 37 chrY 23537418 23537499 -1175580 + (TA)n Simple_repeat Simple_repeat 1 78 0 1427 212 10 14 chrY 23537780 23538077 -1175002 + AluSx SINE Alu 1 296 -16 1465 217 11 3 chrY 23538271 23538557 -1174522 - AluJb SINE Alu -24 288 1 372 366 84 36 chrY 23538758 23539067 -1174012 - L2 LINE L2 -5 3267 2944 186 43 0 0 chrY 23539989 23540012 -1173067 + (TAAAAA)n Simple_repeat Simple_repeat 2 24 0 3393 108 28 6 chrY 23540469 23540910 -1172169 + MER9 LTR ERVK 1 456 -55 396 0 0 0 chrY 23540910 23540954 -1172125 + (TG)n Simple_repeat Simple_repeat 1 44 0 3393 108 28 6 chrY 23540954 23541012 -1172067 + MER9 LTR ERVK 456 511 0 3695 109 28 3 chrY 23541012 23541590 -1171489 + HERVK9 LTR ERVK 1 592 -5324 5344 94 1 5 chrY 23541590 23542345 -1170734 + HERVK9 LTR ERVK 1268 2019 -3897 188 322 34 51 chrY 23542478 23542596 -1170483 - L2 LINE L2 -5 3308 3193 241 191 0 0 chrY 23542597 23542639 -1170440 - LTR33 LTR ERVL -2 519 478 * 738 310 118 6 chrY 23542635 23542967 -1170112 - LTR33 LTR ERVL -149 372 4 258 364 93 0 chrY 23542967 23543105 -1169974 - LTR33 LTR ERVL -370 151 1 318 291 67 51 chrY 23543303 23543557 -1169522 - L1MC5 LINE L1 -37 7924 7667 403 275 44 11 chrY 23543683 23543865 -1169214 - L1MC5 LINE L1 -518 7443 7256 438 295 51 27 chrY 23544003 23544339 -1168740 - L1MC5 LINE L1 -742 7219 6876 407 322 60 20 chrY 23545418 23545567 -1167512 - MIR3 SINE MIR -43 165 11 244 287 37 93 chrY 23545722 23545830 -1167249 - MER5B DNA MER1_type -72 106 5 269 154 39 13 chrY 23546692 23546770 -1166309 + GA-rich Low_complexity Low_complexity 1 80 0 258 331 35 55 chrY 23547137 23547282 -1165797 + MIR SINE MIR 65 206 -56 24 53 0 0 chrY 23548488 23548526 -1164553 + AT_rich Low_complexity Low_complexity 1 38 0 237 264 97 0 chrY 23549105 23549177 -1163902 + MIR SINE MIR 86 164 -98 370 408 25 0 chrY 23549602 23549759 -1163320 + L2 LINE L2 3091 3251 -21 197 163 20 0 chrY 23549772 23549821 -1163258 + (TA)n Simple_repeat Simple_repeat 1 50 0 195 203 0 0 chrY 23550908 23550967 -1162112 + (TG)n Simple_repeat Simple_repeat 2 60 0 23 0 0 0 chrY 23550986 23551009 -1162070 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chrY 23551077 23551100 -1161979 + AT_rich Low_complexity Low_complexity 1 23 0 3299 113 11 4 chrY 23551100 23551624 -1161455 - L1MA1 LINE L1 -6 6296 5769 1259 20 0 0 chrY 23551626 23551773 -1161306 - L1PA2 LINE L1 -3 6152 6006 341 94 0 0 chrY 23551773 23551826 -1161253 - L1MA1 LINE L1 -525 5777 5725 405 109 6 14 chrY 23551830 23551922 -1161157 + L1M1 LINE L1 5587 5668 -483 937 266 4 35 chrY 23552635 23552894 -1160185 + AluJo SINE Alu 8 258 -54 2589 64 0 0 chrY 23556230 23556541 -1156538 + AluY SINE Alu 1 311 0 1150 168 88 118 chrY 23557910 23558374 -1154705 + LTR7 LTR ERV1 1 450 0 347 118 9 55 chrY 23559962 23560072 -1153007 + (TA)n Simple_repeat Simple_repeat 2 106 0 507 96 0 0 chrY 23560563 23560646 -1152433 + (GA)n Simple_repeat Simple_repeat 1 83 0 470 257 129 7 chrY 23560646 23560786 -1152293 - FAM SINE Alu -17 158 2 1010 249 15 15 chrY 23564634 23564927 -1148152 + AluJo SINE Alu 13 305 0 1936 162 7 0 chrY 23564927 23565223 -1147856 + AluSx SINE Alu 1 298 -14 1700 184 0 13 chrY 23566988 23567272 -1145807 + AluSx SINE Alu 1 282 -30 258 32 0 0 chrY 23567272 23567303 -1145776 + (CA)n Simple_repeat Simple_repeat 2 32 0 1700 184 0 13 chrY 23567303 23567327 -1145752 + AluSx SINE Alu 282 305 -7 371 307 120 92 chrY 23569511 23570163 -1142916 + L1M2 LINE L1 472 1141 -5708 485 252 0 9 chrY 23571617 23571724 -1141355 + FLAM_C SINE Alu 13 118 -25 264 122 20 0 chrY 23571727 23571776 -1141303 - MER1B DNA MER1_type -13 316 267 270 108 0 135 chrY 23571940 23572014 -1141065 - MER1B DNA MER1_type -65 274 211 256 161 25 25 chrY 23572161 23572205 -1140874 + L1MA7 LINE L1 6182 6228 -63 696 214 114 68 chrY 23572205 23572485 -1140594 + AluJb SINE Alu 2 294 -8 256 161 25 25 chrY 23572485 23572521 -1140558 + L1MA7 LINE L1 6227 6262 -29 201 245 10 41 chrY 23572972 23573070 -1140009 + (TATG)n Simple_repeat Simple_repeat 2 96 0 2035 133 3 0 chrY 23574831 23575139 -1137940 - AluSc SINE Alu 0 309 1 24 0 0 0 chrY 23577149 23577173 -1135906 + AT_rich Low_complexity Low_complexity 1 24 0 1481 186 7 7 chrY 23577183 23577457 -1135622 + AluSg SINE Alu 5 278 -32 216 0 0 0 chrY 23577457 23577481 -1135598 + (CAAT)n Simple_repeat Simple_repeat 4 27 0 30 0 0 0 chrY 23577750 23577780 -1135299 + AT_rich Low_complexity Low_complexity 1 30 0 951 262 38 31 chrY 23578878 23579168 -1133911 - AluJo SINE Alu -10 292 1 936 285 32 6 chrY 23580645 23580961 -1132118 - L1MB5 LINE L1 -13 6161 5838 1087 208 111 18 chrY 23581033 23581428 -1131651 - L1MB5 LINE L1 -495 5685 5254 244 0 0 0 chrY 23583381 23583408 -1129671 + (TTTG)n Simple_repeat Simple_repeat 2 68 0 1252 227 33 4 chrY 23583408 23583681 -1129398 - AluSg SINE Alu -29 281 1 1418 213 11 14 chrY 23584164 23584450 -1128629 + AluSx SINE Alu 3 287 -15 1240 228 0 44 chrY 23584508 23584828 -1128251 - AluJo SINE Alu -5 307 2 450 273 35 0 chrY 23584875 23585047 -1128032 - L1MA4 LINE L1 -124 6176 5999 233 185 0 0 chrY 23585060 23585114 -1127965 + L1MA4 LINE L1 6236 6289 -11 22 35 0 0 chrY 23585114 23585143 -1127936 + AT_rich Low_complexity Low_complexity 1 29 0 343 339 23 40 chrY 23585391 23585675 -1127404 + L1M3de LINE L1 371 658 -5995 1692 124 120 11 chrY 23585675 23585941 -1127138 - AluSg SINE Alu -15 295 1 343 339 23 40 chrY 23585941 23585998 -1127081 + L1M3de LINE L1 658 1436 -5217 1582 206 37 46 chrY 23586279 23586711 -1126368 + MSTB1 LTR MaLR 4 431 -1 1675 176 0 43 chrY 23586923 23587246 -1125833 - AluSc SINE Alu 0 309 1 546 338 54 37 chrY 23587320 23587781 -1125298 + L1M3b LINE L1 42 510 -5771 238 214 8 120 chrY 23588617 23588734 -1124345 + L1P LINE L1 3463 3566 -2580 472 271 106 7 chrY 23589055 23589206 -1123873 + FRAM SINE Alu 1 166 0 529 187 15 8 chrY 23589814 23589948 -1123131 + CT-rich Low_complexity Low_complexity 2 136 0 1304 236 0 29 chrY 23589967 23590276 -1122803 - AluSx SINE Alu -8 304 5 195 69 0 0 chrY 23590320 23590349 -1122730 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1411 210 7 0 chrY 23590355 23590636 -1122443 - AluSx SINE Alu -29 283 1 295 248 62 26 chrY 23591100 23591213 -1121866 - MLT1F LTR MaLR -37 505 389 789 58 0 0 chrY 23596521 23596624 -1116455 - L1P3 LINE L1 -622 5532 5430 2173 90 3 16 chrY 23596624 23596944 -1116135 + L1PA6 LINE L1 5837 6154 0 21 82 0 0 chrY 23598649 23598698 -1114381 + AT_rich Low_complexity Low_complexity 1 49 0 22 35 0 0 chrY 23598734 23598763 -1114316 + AT_rich Low_complexity Low_complexity 1 29 0 820 228 141 47 chrY 23600472 23600727 -1112352 + AluJo SINE Alu 11 289 -23 186 39 0 0 chrY 23601282 23601308 -1111771 + L2 LINE L2 3284 3309 -4 2623 157 29 100 chrY 23601932 23602665 -1110414 + LTR1 LTR ERV1 1 681 -104 651 162 17 0 chrY 23603047 23603164 -1109915 - MER41E LTR ERV1 -393 119 1 3563 174 42 23 chrY 23605266 23606060 -1107019 - L1PA16 LINE L1 -1 6165 5357 35 24 0 0 chrY 23606573 23606615 -1106464 + AT_rich Low_complexity Low_complexity 1 42 0 2317 109 0 3 chrY 23607612 23607916 -1105163 + AluSc SINE Alu 1 303 -6 22 35 0 0 chrY 23608575 23608604 -1104475 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chrY 23608868 23608890 -1104189 + AT_rich Low_complexity Low_complexity 1 22 0 257 321 43 0 chrY 23609016 23609178 -1103901 - L1ME LINE L1 -653 5511 5343 189 314 29 29 chrY 23609615 23609685 -1103394 + MER5A DNA MER1_type 43 112 -77 225 65 0 0 chrY 23609783 23609814 -1103265 + (CAA)n Simple_repeat Simple_repeat 2 32 0 23 0 0 0 chrY 23611081 23611104 -1101975 + AT_rich Low_complexity Low_complexity 1 23 0 838 111 8 0 chrY 23611115 23611232 -1101847 - AluSc SINE Alu -191 118 1 1745 150 29 0 chrY 23611618 23611898 -1101181 + AluSq SINE Alu 1 288 -25 27 0 0 0 chrY 23612560 23612587 -1100492 + AT_rich Low_complexity Low_complexity 1 27 0 339 200 0 22 chrY 23612748 23612838 -1100241 - L1MA9 LINE L1 -147 6165 6078 1102 67 22 17 chrY 23614156 23614335 -1098744 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 216 0 0 0 chrY 23615739 23615763 -1097316 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2021 134 13 3 chrY 23617142 23617441 -1095638 - AluY SINE Alu 0 311 10 22 35 0 0 chrY 23617828 23617857 -1095222 + AT_rich Low_complexity Low_complexity 1 29 0 1572 197 11 3 chrY 23618083 23618367 -1094712 + AluSx SINE Alu 2 287 -25 23 0 0 0 chrY 23618367 23618390 -1094689 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chrY 23618475 23618504 -1094575 + AT_rich Low_complexity Low_complexity 1 29 0 52 64 0 0 chrY 23618743 23618837 -1094242 + AT_rich Low_complexity Low_complexity 1 94 0 387 0 0 0 chrY 23618848 23618891 -1094188 + (TG)n Simple_repeat Simple_repeat 2 44 0 207 364 8 8 chrY 23619751 23619872 -1093207 + (CAA)n Simple_repeat Simple_repeat 2 122 0 381 218 0 0 chrY 23620286 23620410 -1092669 + GA-rich Low_complexity Low_complexity 1 124 0 201 147 0 0 chrY 23620876 23620910 -1092169 + (CAA)n Simple_repeat Simple_repeat 2 35 0 2048 51 0 0 chrY 23621345 23621601 -1091478 - L1PA4 LINE L1 -1 6154 5899 2646 148 62 6 chrY 23622024 23622491 -1090588 + MER1A DNA MER1_type 31 523 -6 195 42 0 0 chrY 23623916 23623940 -1089139 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 2878 155 29 39 chrY 23624509 23625071 -1088008 + LTR6A LTR ERV1 9 564 0 3060 109 15 0 chrY 23625669 23626482 -1086597 + L1P2 LINE L1 4909 5734 -420 12817 163 3 7 chrY 23626482 23628717 -1084362 + HERVK22 LTR ERVK 46 2271 -4566 1796 183 30 158 chrY 23628717 23629357 -1083722 - LTR6A LTR ERV1 0 564 1 12188 162 2 12 chrY 23629357 23631912 -1081167 + HERVK22 LTR ERVK 2267 4773 -2064 2491 180 15 26 chrY 23631911 23632522 -1080557 + pTR5 LTR ERV1 742 1345 -1093 * 4118 129 15 128 chrY 23632537 23633470 -1079609 + pTR5 LTR ERV1 34 2606 0 * 7538 163 9 13 chrY 23633470 23635426 -1077653 + HERVK22 LTR ERVK 4776 6835 -2 2897 187 25 3 chrY 23635427 23635995 -1077084 + LTR22 LTR ERVK 1 580 0 299 234 0 27 chrY 23636393 23636504 -1076575 + L1ME LINE L1 681 788 -5282 578 232 7 21 chrY 23636620 23636762 -1076317 + MLT1D LTR MaLR 301 440 -65 417 321 95 34 chrY 23637021 23637317 -1075762 - L2 LINE L2 -583 2731 2418 243 0 0 0 chrY 23637456 23637483 -1075596 + (A)n Simple_repeat Simple_repeat 1 27 0 214 331 91 0 chrY 23637720 23637841 -1075238 + MIR SINE MIR 53 184 -78 36 53 0 0 chrY 23638440 23638497 -1074582 + AT_rich Low_complexity Low_complexity 1 57 0 1219 169 16 93 chrY 23638664 23638977 -1074102 - MER52C LTR ERV1 0 1278 990 1102 96 0 0 chrY 23639078 23639224 -1073855 - AluY SINE Alu -3 308 163 1826 185 0 3 chrY 23639405 23639718 -1073361 + AluSx SINE Alu 1 312 0 10117 131 8 0 chrY 23639719 23642227 -1070852 + L1PA7 LINE L1 3596 6146 -8 377 225 70 7 chrY 23642813 23642955 -1070124 + L1M4 LINE L1 4457 4607 -1539 2045 140 0 0 chrY 23644431 23644724 -1068355 - AluSp SINE Alu -20 293 1 384 22 0 0 chrY 23648704 23648749 -1064330 + (CA)n Simple_repeat Simple_repeat 2 46 0 1997 113 11 3 chrY 23650006 23650289 -1062790 + AluSq SINE Alu 9 293 -20 438 275 74 35 chrY 23651095 23651324 -1061755 - MIR SINE MIR -9 253 16 21 0 0 0 chrY 23653359 23653380 -1059699 + AT_rich Low_complexity Low_complexity 1 21 0 328 247 11 11 chrY 23654034 23654127 -1058952 + MER94 DNA DNA 8 100 -34 21 36 0 0 chrY 23655214 23655242 -1057837 + AT_rich Low_complexity Low_complexity 1 28 0 1709 129 0 110 chrY 23656065 23656402 -1056677 + AluSx SINE Alu 2 303 0 598 144 0 0 chrY 23658051 23658141 -1054938 - AluJ/FLAM SINE Alu -222 90 1 613 143 0 0 chrY 23658365 23658456 -1054623 - FLAM_C SINE Alu -20 123 33 950 45 0 30 chrY 23658456 23658589 -1054490 + L1PA4 LINE L1 6027 6155 0 1317 184 36 18 chrY 23658926 23659203 -1053876 - AluJo SINE Alu -30 282 1 1029 113 0 0 chrY 23659485 23659618 -1053461 - AluJb SINE Alu -12 300 168 1756 133 8 16 chrY 23659618 23659873 -1053206 - AluJb SINE Alu -36 276 24 2320 101 0 0 chrY 23660170 23660467 -1052612 - AluSx SINE Alu -15 297 1 22 0 0 0 chrY 23660714 23660736 -1052343 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chrY 23660944 23660970 -1052109 + AT_rich Low_complexity Low_complexity 1 26 0 3920 77 34 2 chrY 23660993 23661529 -1051550 + MER41A LTR ERV1 1 553 -1 236 314 0 0 chrY 23661780 23661866 -1051213 - L1 LINE L1 -1332 4814 4729 331 306 77 55 chrY 23662487 23662670 -1050409 + L2 LINE L2 3059 3245 -27 303 418 0 7 chrY 23662661 23662814 -1050265 - L2 LINE L2 -602 2712 2561 * 195 139 0 0 chrY 23662963 23662999 -1050080 + (A)n Simple_repeat Simple_repeat 1 36 0 407 356 0 12 chrY 23664058 23664218 -1048861 - MER5B DNA MER1_type -20 158 1 1732 173 23 13 chrY 23664541 23664842 -1048237 + AluJb SINE Alu 1 304 -8 218 341 49 12 chrY 23665357 23665439 -1047640 + L2 LINE L2 3225 3309 -4 259 213 98 0 chrY 23665473 23665534 -1047545 + MIR SINE MIR 45 111 -97 2049 141 7 0 chrY 23665649 23665948 -1047131 + AluSx SINE Alu 1 301 -11 29 0 0 0 chrY 23667248 23667277 -1045802 + AT_rich Low_complexity Low_complexity 1 29 0 1535 227 136 22 chrY 23669691 23670241 -1042838 - MLT1E2 LTR MaLR -3 623 11 235 313 48 82 chrY 23671940 23672087 -1040992 - L2 LINE L2 -3 3269 3128 2393 78 10 0 chrY 23672121 23672417 -1040662 + AluY SINE Alu 1 299 -12 306 0 0 0 chrY 23673002 23673036 -1040043 + (TA)n Simple_repeat Simple_repeat 1 34 0 288 0 0 0 chrY 23673035 23673067 -1040012 + (GA)n Simple_repeat Simple_repeat 2 33 0 * 640 179 0 9 chrY 23673080 23673192 -1039887 - FRAM SINE Alu -61 115 5 1441 154 150 11 chrY 23673222 23673482 -1039597 + AluJo SINE Alu 1 296 -6 589 269 126 14 chrY 23673663 23673886 -1039193 + MIR SINE MIR 12 259 -3 629 341 100 55 chrY 23674947 23675182 -1037897 + L2 LINE L2 2154 2377 -937 1650 197 14 0 chrY 23675182 23675472 -1037607 - AluJo SINE Alu -15 297 4 629 341 100 55 chrY 23675472 23675964 -1037115 + L2 LINE L2 2377 2914 -400 377 327 62 0 chrY 23676143 23676256 -1036823 + L2 LINE L2 3137 3256 -16 12098 31 0 0 chrY 23676478 23678686 -1034393 + L1PA2 LINE L1 3947 6155 0 2044 122 7 7 chrY 23680264 23680567 -1032512 - AluSq SINE Alu -10 303 1 22 0 0 0 chrY 23680619 23680641 -1032438 + AT_rich Low_complexity Low_complexity 1 22 0 613 264 32 7 chrY 23681562 23681717 -1031362 + MIR SINE MIR 28 186 -76 203 133 0 0 chrY 23683299 23683329 -1029750 + (CA)n Simple_repeat Simple_repeat 1 30 0 2036 125 0 14 chrY 23685730 23686041 -1027038 + AluSq SINE Alu 2 308 0 551 170 30 10 chrY 23686546 23686646 -1026433 + Tigger3b DNA MER2_type 1 102 -1129 2329 91 0 19 chrY 23686652 23686961 -1026118 - AluY SINE Alu -8 303 1 5364 114 69 9 chrY 23686968 23687870 -1025209 + Tigger3b DNA MER2_type 274 1229 -2 355 253 0 0 chrY 23687872 23687951 -1025128 - MIR SINE MIR -114 148 70 25 0 0 0 chrY 23688661 23688686 -1024393 + AT_rich Low_complexity Low_complexity 1 25 0 292 320 158 25 chrY 23688796 23688946 -1024133 + MIR SINE MIR 32 217 -45 369 0 0 0 chrY 23688946 23688987 -1024092 + (CA)n Simple_repeat Simple_repeat 2 42 0 292 320 158 25 chrY 23688987 23689039 -1024040 + MIR SINE MIR 217 261 -1 3960 217 96 12 chrY 23689371 23690400 -1022679 + L1MC4 LINE L1 6459 7574 -468 1239 218 48 0 chrY 23690400 23690520 -1022559 + AluJo SINE Alu 1 114 -198 293 0 0 26 chrY 23690520 23690558 -1022521 + (CAAAA)n Simple_repeat Simple_repeat 4 40 0 1239 218 48 0 chrY 23690558 23690689 -1022390 + AluJo SINE Alu 114 264 -48 216 0 0 0 chrY 23690689 23690713 -1022366 + (CAAAA)n Simple_repeat Simple_repeat 4 27 0 239 238 48 16 chrY 23690782 23690845 -1022234 + L1MC4 LINE L1 7665 7729 -313 2191 95 3 0 chrY 23690848 23691131 -1021948 + AluSp SINE Alu 17 300 -13 250 209 75 0 chrY 23691145 23691212 -1021867 + L1MC4 LINE L1 7965 8036 -6 354 193 79 35 chrY 23691377 23691491 -1021588 - MER112 DNA MER1_type -20 240 122 4474 99 19 0 chrY 23691513 23692136 -1020943 + MER41B LTR ERV1 1 635 0 22 0 0 0 chrY 23692412 23692434 -1020645 + AT_rich Low_complexity Low_complexity 1 22 0 238 318 55 0 chrY 23692446 23692556 -1020523 - L2 LINE L2 -1 3312 3197 475 284 97 17 chrY 23693660 23693832 -1019247 + MER20B DNA MER1_type 16 202 -17 21 57 0 0 chrY 23694158 23694193 -1018886 + AT_rich Low_complexity Low_complexity 1 35 0 218 70 70 0 chrY 23695230 23695273 -1017806 + A-rich Low_complexity Low_complexity 2 47 0 397 288 27 62 chrY 23696183 23696475 -1016604 - L1MEd LINE L1 -2526 3603 3322 790 244 72 23 chrY 23696819 23697167 -1015912 - L1MEd LINE L1 -2907 3222 2858 4667 240 171 57 chrY 23697211 23697995 -1015084 + L2 LINE L2 811 1505 -1808 2014 113 14 14 chrY 23697995 23698288 -1014791 + AluSx SINE Alu 1 293 -19 4667 240 171 57 chrY 23698288 23698804 -1014275 + L2 LINE L2 1505 1961 -1352 2068 122 3 10 chrY 23698804 23699108 -1013971 + AluSx SINE Alu 1 302 -10 3421 93 6 8 chrY 23699118 23699610 -1013469 + L1PB1 LINE L1 5659 6149 -2 4667 240 171 57 chrY 23699610 23699983 -1013096 + L2 LINE L2 1968 2297 -1016 2320 98 0 0 chrY 23699983 23700279 -1012800 + AluSg SINE Alu 5 300 -10 4667 240 171 57 chrY 23700279 23700859 -1012220 + L2 LINE L2 2297 3313 0 389 265 44 6 chrY 23700905 23701086 -1011993 - L1MEd LINE L1 -3487 2642 2455 26 50 0 0 chrY 23701547 23701587 -1011492 + AT_rich Low_complexity Low_complexity 1 40 0 334 284 89 54 chrY 23701735 23702505 -1010574 - L1MEd LINE L1 -758 1732 841 22 35 0 0 chrY 23703156 23703185 -1009894 + AT_rich Low_complexity Low_complexity 1 29 0 557 330 37 21 chrY 23703654 23703842 -1009237 + MIR3 SINE MIR 12 202 -6 1909 155 0 23 chrY 23704414 23704723 -1008356 + AluSx SINE Alu 1 302 -10 413 252 162 26 chrY 23705262 23705528 -1007551 - L1ME4a LINE L1 -31 6090 5789 314 260 10 10 chrY 23705581 23705677 -1007402 - L1ME4a LINE L1 -315 5806 5711 249 164 269 0 chrY 23705692 23705759 -1007320 + L2 LINE L2 3225 3309 -4 400 275 61 75 chrY 23705800 23706054 -1007025 - L1ME4a LINE L1 -425 5696 5437 2127 119 0 0 chrY 23706054 23706347 -1006732 + AluSx SINE Alu 4 296 -16 400 275 61 75 chrY 23706347 23706430 -1006649 - L1ME4a LINE L1 -684 5437 5354 868 236 74 0 chrY 23707785 23708001 -1005078 - MIR SINE MIR -8 254 23 1604 166 36 26 chrY 23708106 23708414 -1004665 + AluJb SINE Alu 1 311 -1 249 244 134 76 chrY 23708483 23708602 -1004477 + MLT1K LTR MaLR 434 559 -29 3788 82 8 0 chrY 23708668 23709178 -1003901 - L1PA14 LINE L1 -10 6151 5638 2542 163 12 8 chrY 23709178 23709647 -1003432 + L1P4 LINE L1 4791 5264 -882 1057 100 100 6 chrY 23709747 23709805 -1003274 + L1P4 LINE L1 5427 5478 -683 257 48 48 0 chrY 23709805 23709847 -1003232 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1057 100 100 6 chrY 23709847 23709958 -1003121 + L1P4 LINE L1 5478 5612 -549 643 306 14 9 chrY 23710292 23710514 -1002565 + L2 LINE L2 2196 2418 -896 284 326 66 94 chrY 23710614 23710630 -1002449 - L2 LINE L2 -73 3199 3184 1879 148 3 0 chrY 23710630 23710913 -1002166 + AluSq SINE Alu 1 284 -29 284 326 66 94 chrY 23710913 23711184 -1001895 - L2 LINE L2 -88 3184 2920 644 268 34 55 chrY 23711225 23711460 -1001619 - MIR SINE MIR -13 249 20 711 311 38 13 chrY 23711736 23711974 -1001105 + L2 LINE L2 2090 2333 -981 768 157 0 0 chrY 23712001 23712116 -1000963 + AluSp/q SINE Alu 175 289 -24 2609 87 5 33 chrY 23712116 23712379 -1000700 + L1PB2 LINE L1 5769 6019 -132 2321 85 0 3 chrY 23712379 23712672 -1000407 + AluY SINE Alu 2 293 -18 2609 87 5 33 chrY 23712672 23712798 -1000281 + L1PB2 LINE L1 6019 6147 -4 200 187 22 44 chrY 23712835 23712926 -1000153 + (TTATA)n Simple_repeat Simple_repeat 1 89 0 202 110 22 66 chrY 23712929 23713020 -1000059 + (TATAA)n Simple_repeat Simple_repeat 3 89 0 501 241 52 9 chrY 23713093 23713209 -999870 + L2 LINE L2 3192 3312 -1 218 261 70 108 chrY 23713435 23713592 -999487 - MER5A DNA MER1_type -9 180 30 1190 174 9 27 chrY 23714774 23714998 -998081 + MER58A DNA MER1_type 1 220 -4 817 276 114 19 chrY 23716390 23717040 -996039 - MER20B DNA MER1_type -31 752 1 894 208 73 0 chrY 23718995 23719187 -993892 - MIR SINE MIR -56 206 1 382 255 55 48 chrY 23719255 23719400 -993679 + MIR3 SINE MIR 63 208 0 1959 127 10 10 chrY 23719486 23719777 -993302 - AluSg SINE Alu -19 291 1 2581 248 95 38 chrY 23720220 23721391 -991688 + L2 LINE L2 2072 3308 -5 3445 144 43 0 chrY 23722813 23723411 -989668 - L1MA5 LINE L1 -4 6296 5673 231 114 0 0 chrY 23723412 23723456 -989623 + (GA)n Simple_repeat Simple_repeat 2 45 0 252 105 0 0 chrY 23723469 23723507 -989572 - tRNA-Glu-GAG tRNA tRNA -37 38 1 1730 114 11 11 chrY 23723512 23723784 -989295 - L1MA5 LINE L1 -618 5682 5411 2061 145 0 0 chrY 23724118 23724415 -988664 + AluJb SINE Alu 1 297 -15 388 193 0 13 chrY 23724442 23724530 -988549 - L1ME2 LINE L1 -153 6011 5926 692 200 35 0 chrY 23724530 23724675 -988404 + L1ME2 LINE L1 6015 6164 0 252 0 0 0 chrY 23727102 23727130 -985949 + (CAGA)n Simple_repeat Simple_repeat 2 29 0 23 33 0 0 chrY 23727181 23727211 -985868 + AT_rich Low_complexity Low_complexity 1 30 0 328 245 31 41 chrY 23727711 23727809 -985270 - L2 LINE L2 -1 3271 3175 800 119 0 0 chrY 23728912 23729021 -984058 - AluSg/x SINE Alu -12 298 190 751 273 65 14 chrY 23729209 23729425 -983654 + MIR SINE MIR 32 258 -4 508 246 8 8 chrY 23729515 23729645 -983434 + MER94 DNA DNA 5 134 0 1142 224 27 0 chrY 23729779 23730002 -983077 + MIR SINE MIR 12 240 -22 182 440 0 0 chrY 23731673 23731773 -981306 - L2 LINE L2 -449 2865 2766 244 226 54 131 chrY 23732071 23732155 -980924 - L2 LINE L2 0 3313 3224 3784 135 61 16 chrY 23732155 23732192 -980887 + L1MB3 LINE L1 5450 5484 -699 1905 141 4 0 chrY 23732192 23732461 -980618 + AluSq SINE Alu 1 270 -43 180 0 0 0 chrY 23732462 23732482 -980597 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3784 135 61 16 chrY 23732482 23733144 -979935 + L1MB3 LINE L1 5483 6183 0 244 226 54 131 chrY 23733144 23733227 -979852 - L2 LINE L2 -89 3224 3159 198 322 47 40 chrY 23733323 23733472 -979607 + L2 LINE L2 1948 2097 -1217 200 309 27 121 chrY 23733503 23733726 -979353 + L2 LINE L2 2553 2754 -560 2880 136 95 9 chrY 23733743 23734301 -978778 - L1MB7 LINE L1 -9 6175 5570 1698 161 13 51 chrY 23734543 23734859 -978220 - AluSx SINE Alu -8 304 1 180 77 0 0 chrY 23734859 23734885 -978194 + (TG)n Simple_repeat Simple_repeat 2 27 0 38140 46 2 2 chrY 23734924 23739875 -973204 + L1P LINE L1 3 4948 -1198 1448 169 10 39 chrY 23740220 23740667 -972412 + MER44D DNA MER2_type 8 572 -1915 2176 122 10 0 chrY 23740667 23740971 -972108 + AluSq SINE Alu 7 313 0 1448 169 10 39 chrY 23740971 23741005 -972074 + MER44D DNA MER2_type 572 605 0 1674 265 58 46 chrY 23741030 23741754 -971325 - L1M4 LINE L1 -1918 4228 3490 1881 166 3 10 chrY 23741754 23742055 -971024 - AluJo SINE Alu -13 299 1 1674 265 58 46 chrY 23742055 23742203 -970876 - L1M4 LINE L1 -2656 3490 3345 638 161 62 31 chrY 23742234 23742396 -970683 - Charlie1 DNA MER1_type 0 2761 2595 1737 180 0 0 chrY 23742398 23742710 -970369 + AluJb SINE Alu 1 312 0 1246 289 33 102 chrY 23742729 23743444 -969635 + L1M2c LINE L1 373 1409 -6157 1624 246 55 18 chrY 23743727 23744856 -968223 + L1M2c LINE L1 2790 3959 -3606 823 213 134 24 chrY 23744856 23745110 -967969 + LTR10A LTR ERV1 1 282 -327 581 108 0 0 chrY 23745150 23745252 -967827 - BaEV-int LTR ERV1 -4935 1714 1613 432 139 0 14 chrY 23745253 23745325 -967754 + AluS SINE Alu 228 298 -14 5046 156 21 22 chrY 23745329 23747005 -966074 + L1MA6 LINE L1 4615 6293 -7 2990 162 86 44 chrY 23747017 23747349 -965730 - Charlie1 DNA MER1_type -157 2604 2287 2006 121 32 63 chrY 23747349 23747697 -965382 + MER1B DNA MER1_type 1 337 0 2990 162 86 44 chrY 23747697 23748174 -964905 - Charlie1 DNA MER1_type -474 2287 1761 362 268 120 34 chrY 23748182 23748598 -964481 - L1MEc LINE L1 -4984 1221 808 887 179 50 17 chrY 23748706 23748885 -964194 - MER5A DNA MER1_type -1 188 4 261 237 42 25 chrY 23749183 23749301 -963778 - L1MEc LINE L1 -5901 304 185 319 252 43 43 chrY 23749856 23749995 -963084 - L1ME4a LINE L1 -57 6064 5926 23 33 0 0 chrY 23750069 23750099 -962980 + AT_rich Low_complexity Low_complexity 1 30 0 489 164 18 9 chrY 23750298 23750466 -962613 + MER58A DNA MER1_type 5 223 -1 685 214 0 7 chrY 23750914 23751054 -962025 + FRAM SINE Alu 37 175 -1 563 286 43 73 chrY 23751154 23751388 -961691 + MIR SINE MIR 4 230 -32 2056 106 10 7 chrY 23751916 23752209 -960870 - AluSx SINE Alu -18 294 1 34 84 0 0 chrY 23752209 23752292 -960787 + AT_rich Low_complexity Low_complexity 1 83 0 2148 118 0 16 chrY 23752390 23752694 -960385 - AluSx SINE Alu -13 299 1 211 340 75 0 chrY 23752925 23753031 -960048 - MIR SINE MIR -63 145 32 545 311 44 0 chrY 23753463 23753598 -959481 + MIR3 SINE MIR 47 187 -21 837 181 121 0 chrY 23753723 23753905 -959174 + MER3 DNA MER1_type 6 209 0 1816 143 38 7 chrY 23754027 23754314 -958765 + AluSx SINE Alu 1 296 -16 204 206 0 0 chrY 23754849 23754883 -958196 + polypurine Low_complexity Low_complexity 3 36 0 556 209 147 0 chrY 23755602 23755731 -957348 - MER58B DNA MER1_type -2 339 192 582 211 0 9 chrY 23755736 23755850 -957229 + MER58B DNA MER1_type 229 341 0 250 183 85 12 chrY 23756301 23756383 -956696 + L1ME LINE L1 5731 5818 -303 394 289 69 63 chrY 23756428 23756995 -956084 + L1ME3A LINE L1 5258 5827 -343 1771 164 13 38 chrY 23757309 23757627 -955452 - AluJo SINE Alu -2 310 1 21 0 0 0 chrY 23757668 23757689 -955390 + AT_rich Low_complexity Low_complexity 1 21 0 456 227 105 47 chrY 23758559 23758731 -954348 - L1ME1 LINE L1 -5 6161 5980 496 113 183 9 chrY 23758740 23758855 -954224 - L1PA13 LINE L1 -3 6160 6026 188 375 87 10 chrY 23759019 23759123 -953956 + L2 LINE L2 3160 3271 -1 1963 108 75 4 chrY 23759281 23759560 -953519 - AluSx SINE Alu -13 299 1 7409 36 0 10 chrY 23759776 23760219 -952860 + L1PA4 LINE L1 4924 5370 -785 2737 16 0 3 chrY 23760219 23760525 -952554 + AluYa5 SINE Alu 1 305 -6 7409 36 0 10 chrY 23760525 23761321 -951758 + L1PA4 LINE L1 5370 6154 -1 184 271 42 42 chrY 23761373 23761491 -951588 - L2 LINE L2 -573 2741 2624 213 172 17 86 chrY 23761868 23761926 -951153 - MIR SINE MIR -15 247 194 * 500 324 130 27 chrY 23761924 23762471 -950608 - L2 LINE L2 -1031 2283 1681 509 324 113 14 chrY 23763284 23763497 -949582 + MIR SINE MIR 23 256 -6 264 313 92 8 chrY 23763824 23763955 -949124 - MIR3 SINE MIR -37 171 30 244 245 0 0 chrY 23764229 23764278 -948801 - L2 LINE L2 -5 3267 3219 2777 7 0 0 chrY 23764472 23764775 -948304 - AluYa5 SINE Alu -8 303 1 438 176 134 8 chrY 23766661 23766780 -946299 - L1MB8 LINE L1 0 6178 6045 225 281 0 18 chrY 23767439 23767496 -945583 - MIR SINE MIR -50 212 157 305 240 85 39 chrY 23767518 23767647 -945432 - MIR SINE MIR -67 195 61 806 137 0 23 chrY 23767654 23767785 -945294 - FLAM_A SINE Alu -2 131 4 302 355 9 9 chrY 23769152 23769259 -943820 + MIR SINE MIR 42 148 -60 317 222 157 0 chrY 23769561 23769669 -943410 - L1ME4a LINE L1 -11 6110 5986 311 328 8 31 chrY 23770267 23770395 -942684 + L2 LINE L2 2715 2839 -475 367 292 116 53 chrY 23770797 23770997 -942082 + L2 LINE L2 3005 3230 -83 2131 121 0 10 chrY 23770997 23771304 -941775 - AluSx SINE Alu -8 304 1 367 292 116 53 chrY 23771304 23771387 -941692 + L2 LINE L2 3230 3306 -7 257 283 58 65 chrY 23771715 23771853 -941226 - L1MEd LINE L1 -5472 647 511 2210 134 0 0 chrY 23772265 23772571 -940508 - AluSx SINE Alu -6 306 1 503 340 76 75 chrY 23772580 23772795 -940284 + L2 LINE L2 2551 2764 -508 2836 177 13 6 chrY 23772795 23773343 -939736 + L1MB8 LINE L1 5609 6160 -18 503 340 76 75 chrY 23773343 23773627 -939452 + L2 LINE L2 2764 3038 -234 1438 213 43 0 chrY 23773627 23773909 -939170 - AluJo SINE Alu -18 294 1 503 340 76 75 chrY 23773909 23774145 -938934 + L2 LINE L2 3038 3272 0 284 172 0 16 chrY 23774734 23774798 -938281 + A-rich Low_complexity Low_complexity 3 65 0 6650 140 75 2 chrY 23774999 23775556 -937523 + L1 LINE L1 3523 4038 -2108 783 164 0 16 chrY 23775556 23775684 -937395 + FLAM_C SINE Alu 1 126 -7 6650 140 75 2 chrY 23775684 23776419 -936660 + L1 LINE L1 4038 4909 -1237 266 315 84 55 chrY 23776547 23776785 -936294 - L3b LINE CR1 -81 1502 1258 183 196 98 39 chrY 23776924 23776975 -936104 + MIR SINE MIR 108 161 -101 2483 56 0 0 chrY 23777032 23777334 -935745 + AluY SINE Alu 1 302 -9 2183 84 10 13 chrY 23777438 23777736 -935343 + AluSc SINE Alu 1 297 -12 24 32 0 0 chrY 23778982 23779013 -934066 + AT_rich Low_complexity Low_complexity 1 31 0 191 297 0 108 chrY 23779421 23779532 -933547 + L3 LINE CR1 394 492 -1085 * 239 400 44 0 chrY 23779498 23779633 -933446 + MIR SINE MIR 109 249 -13 491 190 134 28 chrY 23779676 23779818 -933261 + MIR SINE MIR 48 204 -58 712 238 121 94 chrY 23779823 23780303 -932776 + MLT1J LTR MaLR 8 500 -11 33 25 0 0 chrY 23780411 23780451 -932628 + AT_rich Low_complexity Low_complexity 1 40 0 2026 125 0 20 chrY 23780458 23780761 -932318 + AluY SINE Alu 1 297 -14 279 0 0 0 chrY 23780761 23780792 -932287 + (TA)n Simple_repeat Simple_repeat 1 31 0 * 423 0 0 0 chrY 23780791 23780838 -932241 + (GA)n Simple_repeat Simple_repeat 2 48 0 204 291 81 35 chrY 23780851 23780937 -932142 + MIR SINE MIR 105 194 -68 529 124 90 11 chrY 23781506 23781595 -931484 - FLAM_C SINE Alu -18 125 30 528 294 34 0 chrY 23782238 23782357 -930722 - L2 LINE L2 -6 3266 3144 287 207 122 0 chrY 23783272 23783354 -929725 + L1MD3 LINE L1 7903 7994 -1 189 0 0 0 chrY 23783718 23783739 -929340 + (CAAAAA)n Simple_repeat Simple_repeat 4 24 0 301 176 0 26 chrY 23785178 23785247 -927832 + AluJo SINE Alu 1 44 -258 412 139 58 23 chrY 23785409 23785495 -927584 + AluJo SINE Alu 48 136 -176 2311 84 3 16 chrY 23785514 23785823 -927256 + AluY SINE Alu 1 305 -6 21 0 0 0 chrY 23786859 23786880 -926199 + AT_rich Low_complexity Low_complexity 1 21 0 446 276 32 45 chrY 23788212 23788415 -924664 - MIR SINE MIR -56 206 8 15981 61 60 4 chrY 23788633 23790863 -922216 + L1PA3 LINE L1 1 2357 -3789 24060 35 7 29 chrY 23790865 23793768 -919311 + L1PA3 LINE L1 2429 5292 -863 2909 13 0 0 chrY 23793768 23794086 -918993 + AluYb8 SINE Alu 1 318 0 24060 35 7 29 chrY 23794086 23794929 -918150 + L1PA3 LINE L1 5292 6153 -2 2196 127 3 0 chrY 23795163 23795470 -917609 + AluSx SINE Alu 2 309 -3 2528 40 10 0 chrY 23795686 23795986 -917093 - AluY SINE Alu -8 303 1 2006 140 0 3 chrY 23796114 23796429 -916650 + AluSx SINE Alu 1 314 0 486 248 68 0 chrY 23796504 23796637 -916442 - MER58B DNA MER1_type -3 338 197 348 272 55 64 chrY 23798077 23798295 -914784 - MIR SINE MIR -46 216 1 1946 153 0 10 chrY 23798436 23798736 -914343 - AluSx SINE Alu -15 297 1 1795 123 83 0 chrY 23798839 23799116 -913963 + AluSx SINE Alu 1 300 -12 218 235 137 0 chrY 23799169 23799220 -913859 + L2 LINE L2 3205 3262 -10 189 77 0 0 chrY 23799506 23799532 -913547 + MIR SINE MIR 227 252 -10 253 352 62 33 chrY 23799551 23799761 -913318 + L2 LINE L2 2866 3081 -191 2787 96 65 25 chrY 23799885 23800332 -912747 + MER4C LTR ERV1 1 465 0 224 240 0 0 chrY 23802525 23802575 -910504 - L2 LINE L2 0 3313 3264 409 182 13 26 chrY 23803332 23803409 -909670 - L2 LINE L2 -1 3312 3237 203 324 15 0 chrY 23803459 23803527 -909552 + MIR SINE MIR 72 140 -122 2294 94 10 0 chrY 23803556 23803854 -909225 - AluSp SINE Alu -12 301 1 436 120 0 67 chrY 23804058 23804133 -908946 + FLAM SINE Alu 56 125 -18 3891 162 147 79 chrY 23804694 23805018 -908061 + Charlie1a DNA MER1_type 78 378 -2383 1895 162 30 0 chrY 23805018 23805320 -907759 + AluJb SINE Alu 1 311 -1 3891 162 147 79 chrY 23805320 23805871 -907208 + Charlie1a DNA MER1_type 378 890 -1871 2078 139 13 0 chrY 23805871 23806173 -906906 + AluSx SINE Alu 1 306 -6 3891 162 147 79 chrY 23806173 23806586 -906493 + Charlie1a DNA MER1_type 890 1455 0 35 54 0 0 chrY 23807264 23807320 -905759 + AT_rich Low_complexity Low_complexity 1 56 0 532 222 26 8 chrY 23807818 23807935 -905144 - FLAM_A SINE Alu -13 120 2 702 138 83 0 chrY 23808141 23808250 -904829 + FLAM_C SINE Alu 1 118 -25 498 266 128 16 chrY 23808263 23808451 -904628 + MIR SINE MIR 19 227 -35 246 303 53 0 chrY 23809150 23809226 -903853 - L3b LINE CR1 -201 1382 1303 238 191 32 0 chrY 23809822 23809885 -903194 + L1M3 LINE L1 5173 5237 -909 694 117 29 0 chrY 23809886 23809989 -903090 + U6 snRNA snRNA 2 107 0 1221 138 18 13 chrY 23810026 23810286 -902793 + L1M3 LINE L1 5226 5487 -696 811 148 15 0 chrY 23810289 23810424 -902655 + FRAM SINE Alu 20 156 -20 21 0 0 0 chrY 23810429 23810450 -902629 + AT_rich Low_complexity Low_complexity 1 21 0 2224 106 3 3 chrY 23810478 23810771 -902308 + AluSc SINE Alu 1 293 -16 996 154 52 123 chrY 23810771 23810959 -902120 + L1M3 LINE L1 5496 5654 -529 1746 151 29 4 chrY 23810959 23811255 -901824 + AluSx SINE Alu 3 305 0 996 154 52 123 chrY 23811255 23811389 -901690 + L1M3 LINE L1 5654 5796 -387 519 176 162 37 chrY 23811397 23811533 -901546 + MLT1D LTR MaLR 351 503 -2 1400 185 89 6 chrY 23811926 23812240 -900839 + MER2 DNA MER2_type 1 340 -5 287 305 49 24 chrY 23813405 23813487 -899592 - MIR SINE MIR -60 148 65 383 152 14 0 chrY 23814395 23814473 -898606 + L1ME2 LINE L1 6084 6165 -1 636 222 34 107 chrY 23814703 23814937 -898142 - MER102a DNA MER1_type -23 307 91 496 390 35 13 chrY 23815479 23815853 -897226 + L2 LINE L2 2478 2859 -455 2118 101 6 25 chrY 23816096 23816412 -896667 - AluY SINE Alu -1 310 1 734 256 58 29 chrY 23817130 23817383 -895696 - MIR SINE MIR 0 262 5 826 19 0 0 chrY 23818126 23818230 -894849 - L1PA3 LINE L1 -104 6051 5948 274 64 0 21 chrY 23818218 23818265 -894814 + L1PA4 LINE L1 6110 6155 0 * 237 150 0 0 chrY 23818734 23818774 -894305 - MER58B DNA MER1_type -9 332 293 1311 228 0 25 chrY 23818774 23819055 -894024 + AluJo SINE Alu 38 311 -1 1144 214 101 7 chrY 23819060 23819336 -893743 - MER58B DNA MER1_type -39 302 1 791 293 0 22 chrY 23819349 23819578 -893501 + MIR SINE MIR 38 261 -1 385 358 74 0 chrY 23819606 23819754 -893325 + L2 LINE L2 2897 3055 -217 2209 102 19 39 chrY 23820018 23820382 -892697 + L1PA16 LINE L1 5809 6165 -1 2202 121 0 0 chrY 23820431 23820728 -892351 + AluY SINE Alu 1 297 -14 1409 204 57 4 chrY 23820731 23821010 -892069 + AluJo SINE Alu 1 294 -18 1136 127 0 18 chrY 23822164 23822330 -890749 + AluSg/x SINE Alu 132 294 -16 491 337 179 20 chrY 23822749 23823399 -889680 - L2 LINE L2 -1102 2212 1460 1244 181 0 26 chrY 23823416 23823642 -889437 + AluJb SINE Alu 87 306 -6 200 286 0 0 chrY 23823680 23823729 -889350 + (TAG)n Simple_repeat Simple_repeat 2 50 0 480 288 92 16 chrY 23823838 23824022 -889057 - MIR SINE MIR -61 201 4 393 331 198 30 chrY 23824141 23825004 -888075 - L2 LINE L2 -1912 1402 395 2044 144 23 0 chrY 23825114 23825420 -887659 - AluSq SINE Alu 0 313 1 2009 145 20 0 chrY 23825428 23825797 -887282 - AluSq SINE Alu 0 375 1 2243 96 3 7 chrY 23825873 23826165 -886914 - AluSp SINE Alu -19 294 4 1572 113 124 0 chrY 23826318 23826583 -886496 - AluY SINE Alu -3 298 1 881 147 0 0 chrY 23826730 23826859 -886220 - FLAM_C SINE Alu -2 131 3 330 278 174 12 chrY 23826911 23827152 -885927 - L1ME LINE L1 -348 5773 5494 312 180 0 0 chrY 23827317 23827378 -885701 - L1MB8 LINE L1 -6 6172 6112 1780 179 0 7 chrY 23827381 23827677 -885402 + AluSx SINE Alu 1 294 -18 3605 156 21 95 chrY 23827689 23827813 -885266 - L1MB8 LINE L1 -50 6128 5996 1778 145 10 30 chrY 23827813 23828117 -884962 + AluJb SINE Alu 8 305 -7 3605 156 21 95 chrY 23828117 23828994 -884085 - L1MB8 LINE L1 -182 5996 5195 1246 220 8 12 chrY 23828995 23829254 -883825 - AluJo SINE Alu -5 307 50 353 149 43 142 chrY 23829254 23829301 -883778 - L1MB8 LINE L1 -955 5191 5141 1539 196 25 7 chrY 23829301 23829587 -883492 + AluJo SINE Alu 9 299 -13 353 149 43 142 chrY 23829587 23829680 -883399 - L1MB8 LINE L1 -1005 5141 5065 1906 164 39 7 chrY 23829726 23830135 -882944 - L1MB8 LINE L1 -1072 5074 4653 2185 103 33 0 chrY 23830140 23830440 -882639 - AluSg SINE Alu 0 310 1 357 262 147 40 chrY 23830444 23830528 -882551 - L1ME LINE L1 -745 5401 5327 2282 85 7 0 chrY 23830528 23830821 -882258 - AluY SINE Alu -16 295 1 357 262 147 40 chrY 23830821 23830961 -882118 - L1ME LINE L1 -819 5327 5153 353 266 176 10 chrY 23830996 23831308 -881771 - L1ME LINE L1 -1059 5087 4724 363 194 163 0 chrY 23831451 23831549 -881530 - MIR SINE MIR 0 262 149 320 265 119 13 chrY 23831607 23831678 -881401 - L1MB8 LINE L1 -1638 4508 4446 2148 113 0 67 chrY 23831678 23832005 -881074 + AluSx SINE Alu 1 305 -7 320 265 119 13 chrY 23832005 23832084 -880995 - L1MB8 LINE L1 -1700 4446 4342 24 0 0 0 chrY 23832175 23832199 -880880 + AT_rich Low_complexity Low_complexity 1 24 0 2049 88 44 0 chrY 23833559 23833862 -879217 + AluY SINE Alu 1 315 0 408 281 37 0 chrY 23833909 23833949 -879130 + MER92B LTR ERV1 460 497 -139 2364 86 17 0 chrY 23833949 23834250 -878829 + AluY SINE Alu 1 306 -5 408 281 37 0 chrY 23834250 23834344 -878735 + MER92B LTR ERV1 497 599 -37 203 61 30 0 chrY 23834353 23834386 -878693 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 481 261 0 17 chrY 23834477 23834596 -878483 + MIR3 SINE MIR 79 195 -13 230 293 185 19 chrY 23835227 23835432 -877647 + L1ME3 LINE L1 5475 5713 -457 4330 160 5 4 chrY 23835451 23836209 -876870 - L1MB7 LINE L1 -8 6176 5418 343 274 40 16 chrY 23836262 23836386 -876693 + L1ME3 LINE L1 5730 5856 -306 2074 152 0 0 chrY 23836450 23836747 -876332 - AluSx SINE Alu -15 297 1 1971 146 3 0 chrY 23837304 23837598 -875481 - AluSx SINE Alu -17 295 1 249 128 0 0 chrY 23837682 23837729 -875350 + (T)n Simple_repeat Simple_repeat 1 47 0 4317 53 0 0 chrY 23837762 23838293 -874786 - L1PA5 LINE L1 -9 6145 5615 429 54 0 0 chrY 23838753 23838809 -874270 + (CA)n Simple_repeat Simple_repeat 2 57 0 202 222 0 0 chrY 23838892 23838928 -874151 + T-rich Low_complexity Low_complexity 3 38 0 313 252 25 34 chrY 23839959 23840078 -873001 - L2 LINE L2 -220 3052 2935 455 276 9 9 chrY 23840231 23840336 -872743 + MER5A DNA MER1_type 35 139 -50 395 244 179 39 chrY 23840755 23840911 -872168 + MER5A DNA MER1_type 1 189 0 425 334 69 60 chrY 23840952 23841414 -871665 - L2 LINE L2 -913 2401 1932 2079 120 21 0 chrY 23841414 23841705 -871374 + AluSg SINE Alu 1 297 -13 425 334 69 60 chrY 23841705 23841805 -871274 - L2 LINE L2 -1382 1932 1834 186 43 0 0 chrY 23841924 23841947 -871132 + (A)n Simple_repeat Simple_repeat 1 23 0 2264 83 0 7 chrY 23842054 23842355 -870724 + AluY SINE Alu 1 299 -12 1510 107 31 5 chrY 23842588 23842812 -870267 + MER30 DNA MER1_type 1 230 0 26 30 0 0 chrY 23842907 23842940 -870139 + AT_rich Low_complexity Low_complexity 1 33 0 427 352 70 64 chrY 23843627 23843834 -869245 - L2 LINE L2 -1 3271 3067 1214 192 126 26 chrY 23843834 23844105 -868974 + AluJo SINE Alu 1 298 -14 427 352 70 64 chrY 23844105 23844436 -868643 - L2 LINE L2 -205 3067 2663 2364 107 0 3 chrY 23844436 23844744 -868335 + AluSx SINE Alu 1 307 -5 427 352 70 64 chrY 23844744 23844834 -868245 - L2 LINE L2 -609 2663 2575 452 110 0 77 chrY 23844838 23844924 -868155 + AluS SINE Alu 1 80 -229 1855 108 4 12 chrY 23844924 23845183 -867896 + AluSx SINE Alu 43 299 -13 260 309 103 10 chrY 23845278 23845375 -867704 + L2 LINE L2 3165 3270 -2 * 349 326 148 0 chrY 23845372 23845568 -867511 - L2 LINE L2 -830 2484 2260 299 256 50 33 chrY 23845735 23845856 -867223 + L1ME3A LINE L1 6041 6163 -7 346 286 108 33 chrY 23845867 23846080 -866999 + L1ME2 LINE L1 3953 4181 -1965 1196 145 7 64 chrY 23846081 23846363 -866716 + L1ME2 LINE L1 4898 5163 -983 2179 126 0 3 chrY 23846418 23846727 -866352 + AluSx SINE Alu 1 308 -4 1288 176 165 15 chrY 23846860 23847121 -865958 - AluJb SINE Alu 0 302 3 1779 175 7 0 chrY 23847133 23847424 -865655 - AluJo SINE Alu -19 293 1 2292 104 0 25 chrY 23847475 23847792 -865287 + AluSx SINE Alu 1 309 -3 756 126 7 28 chrY 23847844 23847987 -865092 + L1MD3 LINE L1 7855 7994 -1 1439 212 36 82 chrY 23847992 23848327 -864752 + L1ME2 LINE L1 5187 5536 -628 1845 146 0 65 chrY 23848327 23848650 -864429 + AluJo SINE Alu 1 302 -10 1439 212 36 82 chrY 23848650 23848814 -864265 + L1ME2 LINE L1 5536 5706 -458 2207 105 3 3 chrY 23848814 23849110 -863969 + AluSx SINE Alu 1 296 -16 1439 212 36 82 chrY 23849110 23849425 -863654 + L1ME2 LINE L1 5706 5923 -241 1829 163 7 0 chrY 23849558 23849852 -863227 + AluJb SINE Alu 1 296 -16 1412 181 66 11 chrY 23850635 23850906 -862173 + AluJo SINE Alu 1 286 -26 389 221 79 8 chrY 23851005 23851132 -861947 + L1ME2 LINE L1 5938 6073 -91 258 167 0 0 chrY 23851132 23851174 -861905 - MSTB LTR MaLR 0 426 385 267 162 0 54 chrY 23851363 23851437 -861642 + (CAGGG)n Simple_repeat Simple_repeat 2 71 0 324 299 181 72 chrY 23851449 23852313 -860766 - L1M2 LINE L1 -5447 1402 445 457 252 48 18 chrY 23852325 23852678 -860401 + (CTAGGG)n Simple_repeat Simple_repeat 1 363 0 445 271 46 9 chrY 23852746 23853084 -859995 + (CTAGGG)n Simple_repeat Simple_repeat 1 350 0 200 146 0 21 chrY 23853101 23853149 -859930 + (CAGGG)n Simple_repeat Simple_repeat 1 47 0 199 156 0 56 chrY 23853277 23853367 -859712 + (CAGGG)n Simple_repeat Simple_repeat 1 85 0 434 250 53 0 chrY 23853423 23853575 -859504 + (CTAGGG)n Simple_repeat Simple_repeat 1 160 0 366 280 48 0 chrY 23853687 23853855 -859224 + (CTAGGG)n Simple_repeat Simple_repeat 2 177 0 247 220 6 69 chrY 23853939 23854098 -858981 + (CAGGG)n Simple_repeat Simple_repeat 1 149 0 * 251 215 11 84 chrY 23853984 23854175 -858904 + (CAGGC)n Simple_repeat Simple_repeat 3 179 0 453 202 5 64 chrY 23854189 23854377 -858702 + (CAGGG)n Simple_repeat Simple_repeat 1 177 0 678 278 72 24 chrY 23855187 23855538 -857541 - HSREP522 Satellite telomeric -171 367 1 4368 226 51 18 chrY 23855669 23856462 -856617 + L1 LINE L1 2785 3640 -2506 2691 13 7 3 chrY 23856462 23856770 -856309 + AluY SINE Alu 1 309 -2 4368 226 51 18 chrY 23856770 23857297 -855782 + L1 LINE L1 3640 4148 -1998 2398 116 86 2 chrY 23857297 23857762 -855317 - HSREP522 Satellite telomeric 0 504 1 1190 150 165 25 chrY 23857776 23858103 -854976 - TAR1 Satellite telomeric -243 1868 1496 288 242 5 88 chrY 23858971 23859165 -853914 + (GGGTG)n Simple_repeat Simple_repeat 3 180 0 * 332 208 5 102 chrY 23859027 23859224 -853855 + G-rich Low_complexity Low_complexity 3 180 0 511 96 0 36 chrY 23859960 23860043 -853036 - MADE1 DNA Mariner 0 80 1 465 308 99 31 chrY 23860556 23860848 -852231 + L1ME LINE L1 5495 5806 -315 21 0 0 31 chrY 23861143 23861158 -851921 + AT_rich Low_complexity Low_complexity 1 15 -16 2088 132 7 3 chrY 23861158 23861468 -851611 - AluSx SINE Alu -1 311 1 21 0 0 31 chrY 23861468 23861484 -851595 + AT_rich Low_complexity Low_complexity 15 31 0 501 279 31 12 chrY 23862552 23862713 -850366 - MIR SINE MIR 0 262 99 207 69 0 0 chrY 23864685 23864714 -848365 + (CAA)n Simple_repeat Simple_repeat 2 30 0 28 0 0 0 chrY 23865379 23865407 -847672 + AT_rich Low_complexity Low_complexity 1 28 0 251 283 178 6 chrY 23865750 23865930 -847149 + MER102a DNA MER1_type 120 330 0 21 0 0 0 chrY 23865972 23865993 -847086 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chrY 23866057 23866085 -846994 + AT_rich Low_complexity Low_complexity 1 28 0 1954 118 0 28 chrY 23866222 23866552 -846527 + AluSc SINE Alu 1 322 0 201 313 100 25 chrY 23867363 23867443 -845636 - L2 LINE L2 -48 3224 3139 410 273 71 19 chrY 23868306 23868460 -844619 + MIR SINE MIR 18 179 -83 234 0 0 0 chrY 23868472 23868498 -844581 + (TA)n Simple_repeat Simple_repeat 1 26 0 290 119 81 19 chrY 23868571 23868731 -844348 + (TA)n Simple_repeat Simple_repeat 2 171 0 367 127 0 0 chrY 23870706 23870761 -842318 + U6 snRNA snRNA 1 55 -52 24 32 0 0 chrY 23871841 23871872 -841207 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chrY 23872138 23872160 -840919 + AT_rich Low_complexity Low_complexity 1 22 0 387 83 0 42 chrY 23872388 23872460 -840619 - Tigger2 DNA MER2_type -147 2571 2503 193 361 21 10 chrY 23872776 23872873 -840206 - L2 LINE L2 -787 2527 2430 253 309 139 56 chrY 23873045 23873333 -839746 - L2 LINE L2 -1145 2169 1858 1544 207 0 30 chrY 23874316 23874615 -838464 - AluJo SINE Alu -16 296 7 234 0 0 0 chrY 23874953 23874979 -838100 + (TA)n Simple_repeat Simple_repeat 2 27 0 2028 129 0 10 chrY 23874979 23875263 -837816 - AluSc SINE Alu -26 283 1 795 241 25 0 chrY 23875273 23875431 -837648 - FAM SINE Alu -13 162 1 2302 226 46 7 chrY 23875768 23876309 -836770 - MER68 LTR ERV1 0 562 1 26 50 0 0 chrY 23876584 23876624 -836455 + AT_rich Low_complexity Low_complexity 1 40 0 27 62 0 0 chrY 23876642 23876690 -836389 + AT_rich Low_complexity Low_complexity 1 48 0 1472 233 45 9 chrY 23876879 23877300 -835779 - L1MC1 LINE L1 -6 6327 5892 2649 219 50 15 chrY 23878337 23878999 -834080 - MER44D DNA MER2_type -1 704 20 2895 187 113 76 chrY 23879002 23879830 -833249 + MER21B LTR ERV1 1 859 -4 1938 145 3 17 chrY 23880257 23880553 -832526 - AluSx SINE Alu -16 296 5 639 192 8 25 chrY 23880564 23880684 -832395 - FLAM_A SINE Alu -16 126 9 329 61 0 20 chrY 23880685 23880734 -832345 + (CA)n Simple_repeat Simple_repeat 2 49 0 2852 80 2 0 chrY 23880739 23881200 -831879 - L1P3 LINE L1 -505 5649 5188 6624 106 14 1 chrY 23881200 23882244 -830835 + L1P3 LINE L1 4116 5173 -973 248 62 0 0 chrY 23884378 23884426 -828653 - LTR66 LTR ERVL -169 441 394 307 188 174 0 chrY 23886120 23886189 -826890 - MER5A DNA MER1_type -83 106 26 267 247 153 0 chrY 23887998 23888083 -824996 - MER5A DNA MER1_type -83 106 9 1508 153 8 0 chrY 23889206 23889441 -823638 - AluSx SINE Alu -71 241 5 31 36 0 18 chrY 23889451 23889483 -823596 + AT_rich Low_complexity Low_complexity 1 33 -22 458 291 0 26 chrY 23889483 23889600 -823479 - FLAM_A SINE Alu -16 117 4 31 36 0 18 chrY 23889600 23889623 -823456 + AT_rich Low_complexity Low_complexity 33 55 0 445 366 18 18 chrY 23889749 23889976 -823103 - MIR SINE MIR 0 262 36 257 299 72 10 chrY 23890598 23890695 -822384 - L3 LINE CR1 -8 1569 1467 239 392 125 0 chrY 23890692 23890812 -822267 - MIR3 SINE MIR -72 136 2 * 35 78 0 0 chrY 23891817 23891894 -821185 + AT_rich Low_complexity Low_complexity 1 77 0 24 0 0 0 chrY 23892706 23892730 -820349 + AT_rich Low_complexity Low_complexity 1 24 0 1670 178 0 4 chrY 23892766 23893035 -820044 - AluSx SINE Alu -44 268 1 2301 100 0 3 chrY 23893707 23894016 -819063 - AluY SINE Alu -3 308 1 780 176 128 7 chrY 23894064 23894212 -818867 + AluJb SINE Alu 124 289 -23 1024 182 25 37 chrY 23894449 23894752 -818327 + MER2 DNA MER2_type 1 345 0 333 0 0 0 chrY 23894754 23894791 -818288 + (TG)n Simple_repeat Simple_repeat 2 38 0 603 156 9 18 chrY 23895139 23895248 -817831 + FRAM SINE Alu 53 160 -16 2151 121 7 0 chrY 23895398 23895695 -817384 + AluSx SINE Alu 1 299 -13 1706 165 33 0 chrY 23895735 23896034 -817045 + AluJo SINE Alu 1 308 0 391 206 11 43 chrY 23896243 23896335 -816744 + L2 LINE L2 3225 3313 0 1964 148 7 14 chrY 23896735 23897032 -816047 - AluSx SINE Alu -17 295 1 195 42 0 0 chrY 23897078 23897102 -815977 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1014 163 47 0 chrY 23897143 23897315 -815764 + MER5A DNA MER1_type 1 180 -9 189 0 0 0 chrY 23897340 23897361 -815718 + (TG)n Simple_repeat Simple_repeat 2 22 0 2056 120 7 0 chrY 23897362 23897637 -815442 - AluSx SINE Alu -35 277 1 2151 122 0 3 chrY 23898105 23898400 -814679 + AluSg SINE Alu 1 294 -16 2077 89 44 0 chrY 23898561 23898877 -814202 + AluY SINE Alu 1 328 0 2137 104 3 24 chrY 23899149 23899446 -813633 - AluSg1 SINE Alu -14 295 5 1805 135 50 3 chrY 23899448 23899730 -813349 - AluSx SINE Alu -6 306 12 271 269 0 13 chrY 23899739 23899817 -813262 + CT-rich Low_complexity Low_complexity 1 77 0 342 296 115 21 chrY 23900110 23900353 -812726 - L1MC/D LINE L1 -2032 5776 5511 636 176 29 22 chrY 23900420 23900556 -812523 - FLAM_C SINE Alu -6 137 1 1781 173 0 10 chrY 23900593 23900893 -812186 - AluJb SINE Alu -15 297 1 2076 123 17 7 chrY 23902302 23902594 -810485 - AluSx SINE Alu -16 296 2 2258 112 3 0 chrY 23903011 23903316 -809763 - AluSp SINE Alu -7 306 1 28 0 0 0 chrY 23903439 23903467 -809612 + AT_rich Low_complexity Low_complexity 1 28 0 2365 98 0 0 chrY 23903733 23904040 -809039 - AluY SINE Alu -4 307 1 2437 78 0 3 chrY 23904615 23904910 -808169 + AluY SINE Alu 1 294 -17 2031 144 3 7 chrY 23904945 23905243 -807836 - AluSx SINE Alu -15 297 1 2104 106 20 0 chrY 23905255 23905547 -807532 - AluSc SINE Alu -11 298 1 779 181 0 0 chrY 23905874 23906007 -807072 - FLAM_C SINE Alu 0 133 1 818 236 154 25 chrY 23906012 23906376 -806703 - L1MC4 LINE L1 0 8042 7632 231 332 152 52 chrY 23906378 23906667 -806412 - L2 LINE L2 -565 2749 2432 247 322 169 8 chrY 23906754 23907139 -805940 - L2 LINE L2 -1066 2248 1802 1852 127 51 0 chrY 23907164 23907440 -805639 - AluSx SINE Alu -22 290 1 300 267 23 12 chrY 23907588 23907674 -805405 + MIR SINE MIR 58 144 -64 1002 153 24 29 chrY 23907790 23907985 -805094 + AluSg/x SINE Alu 131 310 0 392 221 15 84 chrY 23908053 23908184 -804895 + MIR SINE MIR 87 208 -54 5658 128 37 26 chrY 23908583 23909617 -803462 - L1PA15 LINE L1 0 6165 5112 1978 122 10 10 chrY 23909617 23909913 -803166 - AluSq SINE Alu -17 296 1 5658 128 37 26 chrY 23909913 23910101 -802978 - L1PA15 LINE L1 -1053 5112 4928 22 56 0 0 chrY 23910763 23910799 -802280 + AT_rich Low_complexity Low_complexity 1 36 0 530 289 168 25 chrY 23911027 23911562 -801517 - L1MC4a LINE L1 -545 5621 5261 326 192 0 13 chrY 23911840 23911918 -801161 - HAL1 LINE L1 -302 2205 2129 1547 195 57 7 chrY 23911933 23912230 -800849 - AluJo SINE Alu 0 312 1 2191 130 3 0 chrY 23912289 23912596 -800483 - AluSg SINE Alu 0 310 3 247 290 285 5 chrY 23912775 23912996 -800083 - HAL1 LINE L1 -665 1842 1560 959 153 0 0 chrY 23913054 23913191 -799888 - AluSg/x SINE Alu -39 271 135 1588 178 48 3 chrY 23913192 23913485 -799594 - AluSq SINE Alu -7 306 1 345 222 40 68 chrY 23913499 23913875 -799204 - HAL1 LINE L1 -991 1516 1058 2301 125 0 0 chrY 23913879 23914192 -798887 + AluSq SINE Alu 1 313 0 307 136 0 0 chrY 23914253 23914297 -798782 - Alu SINE Alu -256 44 1 334 290 28 52 chrY 23914320 23914440 -798639 - MLT1J1 LTR MaLR -284 188 80 1592 193 3 23 chrY 23914440 23914741 -798338 - AluJo SINE Alu -17 295 1 334 290 28 52 chrY 23914741 23914818 -798261 - MLT1J1 LTR MaLR -392 80 3 1019 321 108 29 chrY 23914823 23915638 -797441 - HAL1 LINE L1 -1618 889 11 195 100 0 0 chrY 23915654 23915684 -797395 + (TG)n Simple_repeat Simple_repeat 2 31 0 1500 214 3 23 chrY 23915689 23915988 -797091 - AluJo SINE Alu -19 293 1 593 211 149 14 chrY 23916310 23916521 -796558 - L1MDa LINE L1 -3860 2680 2432 1905 166 7 0 chrY 23916521 23916823 -796256 - AluJb SINE Alu -8 304 1 593 211 149 14 chrY 23916823 23916922 -796157 - L1MDa LINE L1 -4108 2432 2348 1914 132 14 7 chrY 23916948 23917243 -795836 + AluSq SINE Alu 1 297 -16 1700 138 103 11 chrY 23917245 23917527 -795552 + AluSx SINE Alu 1 308 -4 1710 168 55 0 chrY 23917582 23917873 -795206 - AluJo SINE Alu -5 307 1 312 175 47 24 chrY 23918190 23918275 -794804 + MLT1E3 LTR MaLR 420 491 -102 819 184 21 0 chrY 23918278 23918419 -794660 + FRAM SINE Alu 11 154 -22 450 286 94 29 chrY 23918433 23918741 -794338 + L1ME3A LINE L1 3307 3634 -2512 716 264 37 33 chrY 23918846 23919145 -793934 + L1ME3A LINE L1 3861 4160 -1986 1208 244 98 54 chrY 23919194 23919694 -793385 + MLT1E LTR MaLR 70 591 -2 646 245 55 85 chrY 23919794 23919975 -793104 + L1ME3A LINE L1 4322 4507 -1639 1855 167 0 10 chrY 23919975 23920283 -792796 + AluSx SINE Alu 1 305 0 646 245 55 85 chrY 23920283 23920400 -792679 + L1ME3A LINE L1 4507 4626 -1520 2037 143 3 0 chrY 23920400 23920700 -792379 - AluSq SINE Alu -10 303 3 646 245 55 85 chrY 23920700 23920926 -792153 + L1ME3A LINE L1 4626 4832 -1314 1769 99 126 18 chrY 23920964 23920975 -792104 + MSTC LTR MaLR 1 9 -419 2414 116 31 3 chrY 23920975 23921329 -791750 - THE1B LTR MaLR 0 364 1 1769 99 126 18 chrY 23921329 23921659 -791420 + MSTC LTR MaLR 9 379 -49 306 209 68 110 chrY 23921659 23921747 -791332 + L1ME3A LINE L1 4960 5050 -1096 2019 125 48 7 chrY 23921747 23922042 -791037 + AluSx SINE Alu 3 309 -3 2316 98 0 0 chrY 23922042 23922339 -790740 + AluY SINE Alu 1 297 -14 306 209 68 110 chrY 23922339 23922412 -790667 + L1ME3A LINE L1 5048 5115 -1031 397 292 58 7 chrY 23922419 23922573 -790506 + L1ME3A LINE L1 5135 5296 -850 2195 128 0 6 chrY 23922659 23922971 -790108 + AluSx SINE Alu 3 312 0 2217 99 3 0 chrY 23923041 23923324 -789755 + AluSq SINE Alu 16 299 -14 450 192 184 43 chrY 23923330 23923564 -789515 + L1P5 LINE L1 5301 5567 -587 332 219 31 16 chrY 23923581 23923709 -789370 + (TA)n Simple_repeat Simple_repeat 1 130 0 527 263 29 0 chrY 23923839 23924014 -789065 + L1ME3A LINE L1 5760 5939 -231 257 200 27 45 chrY 23924185 23924295 -788784 + (TTATA)n Simple_repeat Simple_repeat 3 110 0 2016 139 0 14 chrY 23924621 23924946 -788133 + AluSx SINE Alu 1 321 0 1892 137 14 3 chrY 23925322 23925614 -787465 - AluSx SINE Alu -16 296 2 1845 150 60 6 chrY 23926169 23926516 -786563 + MER47A DNA MER2_type 1 366 0 187 221 264 43 chrY 23926777 23926917 -786162 + MIR SINE MIR 31 201 -61 235 296 42 0 chrY 23927486 23927557 -785522 - L2 LINE L2 0 3272 3199 202 301 183 65 chrY 23927568 23927814 -785265 + L2 LINE L2 2997 3271 -1 765 200 0 18 chrY 23927915 23928085 -784994 - MLT1A1 LTR MaLR 0 365 199 2165 141 45 12 chrY 23928131 23928550 -784529 + L1MB4 LINE L1 5748 6180 0 1651 148 74 0 chrY 23928559 23928829 -784250 + AluJo SINE Alu 1 290 -22 897 110 0 8 chrY 23929956 23930074 -783005 + AluSq/x SINE Alu 1 117 -196 1955 120 7 10 chrY 23930256 23930547 -782532 - AluSx SINE Alu -22 290 1 850 191 62 0 chrY 23930775 23930984 -782095 - MER99 DNA DNA -271 557 336 2171 117 0 7 chrY 23930984 23931148 -781931 - AluSq SINE Alu -17 296 133 783 55 0 0 chrY 23931148 23931257 -781822 + (TA)n Simple_repeat Simple_repeat 1 109 0 2171 117 0 7 chrY 23931257 23931390 -781689 - AluSq SINE Alu -180 133 1 1041 158 31 36 chrY 23931702 23931898 -781181 - AluJb SINE Alu -117 195 1 332 195 195 8 chrY 23931899 23932017 -781062 - L1MB8 LINE L1 -270 5908 5769 1829 114 57 13 chrY 23932023 23932339 -780740 - L1MA4A LINE L1 0 6303 5974 968 102 8 0 chrY 23932340 23932467 -780612 - AluSq/x SINE Alu -184 128 1 5431 102 19 26 chrY 23932776 23934289 -778790 - L1PA15 LINE L1 -8 6157 4675 298 304 120 40 chrY 23934292 23934542 -778537 + L2 LINE L2 2489 2758 -556 227 404 35 39 chrY 23934585 23934840 -778239 + L2 LINE L2 2839 3092 -180 477 308 102 32 chrY 23934853 23935227 -777852 - L1MCa LINE L1 -5266 1150 751 454 180 50 72 chrY 23935442 23935581 -777498 - L1MEd LINE L1 -5924 618 483 2080 133 23 0 chrY 23935749 23936051 -777028 + AluSx SINE Alu 1 309 -3 1456 266 67 19 chrY 23936068 23936587 -776492 + L1M4 LINE L1 -260 283 -5997 2271 104 0 19 chrY 23936597 23936914 -776165 + AluY SINE Alu 1 311 0 2361 199 21 0 chrY 23936920 23937356 -775723 - MER44D DNA MER2_type -61 544 228 633 259 16 103 chrY 23937359 23937621 -775458 + L1M4 LINE L1 1659 1841 -4543 476 289 17 25 chrY 23937652 23937891 -775188 + L1M4 LINE L1 2025 2261 -4123 3892 206 62 18 chrY 23937899 23938996 -774083 + L1M4 LINE L1 2354 3498 -2884 3675 232 57 15 chrY 23939076 23939218 -773861 + L1M4 LINE L1 4245 4380 -2002 180 0 0 0 chrY 23939218 23939238 -773841 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 3675 232 57 15 chrY 23939238 23940137 -772942 + L1M4 LINE L1 4380 5329 -1053 1509 233 87 102 chrY 23940138 23940768 -772311 - L1MCa LINE L1 -5784 642 22 1344 190 57 11 chrY 23940774 23941090 -771989 - L1ME LINE L1 -567 5599 5269 1011 121 6 6 chrY 23941097 23941263 -771816 - L1MA6 LINE L1 -6 6294 6129 5860 30 1 0 chrY 23941670 23942363 -770716 - L1PA3 LINE L1 -1 6154 5461 202 186 68 0 chrY 23943264 23943323 -769756 + A-rich Low_complexity Low_complexity 4 66 0 186 290 0 29 chrY 23945239 23945308 -767771 - MIR SINE MIR -124 138 72 417 20 0 0 chrY 23945554 23945604 -767475 + (CA)n Simple_repeat Simple_repeat 1 50 0 22 35 0 0 chrY 23947121 23947150 -765929 + AT_rich Low_complexity Low_complexity 1 29 0 2090 125 3 0 chrY 23947325 23947614 -765465 + AluSg SINE Alu 1 290 -20 1540 210 174 58 chrY 23948111 23948745 -764334 - L1MC4 LINE L1 -678 7347 6641 569 300 63 35 chrY 23948961 23949440 -763639 - L1MC4 LINE L1 -453 5700 5255 2082 158 99 3 chrY 23949572 23949964 -763115 + MSTB1 LTR MaLR 1 430 -2 420 332 59 5 chrY 23950190 23950410 -762669 - L1MC4 LINE L1 -1116 5013 4782 406 271 94 43 chrY 23950623 23951135 -761944 - L1MC4 LINE L1 -2699 3430 2893 500 319 67 53 chrY 23951354 23951921 -761158 - L1MC4 LINE L1 -4864 1255 681 371 193 11 45 chrY 23951985 23952073 -761006 - MER94 DNA DNA -48 86 2 715 261 121 50 chrY 23952199 23952563 -760516 - MER57B LTR ERV1 -4 430 41 360 43 0 0 chrY 23952848 23952894 -760185 + (TTTTG)n Simple_repeat Simple_repeat 2 47 0 1166 186 42 5 chrY 23953348 23953563 -759516 - MLT1C LTR MaLR 0 467 245 185 211 19 0 chrY 23953739 23953791 -759288 + (CATA)n Simple_repeat Simple_repeat 2 54 0 1816 149 7 40 chrY 23954435 23954731 -758348 + AluSx SINE Alu 4 289 -23 22 70 0 0 chrY 23954933 23954976 -758103 + AT_rich Low_complexity Low_complexity 1 43 0 241 153 17 17 chrY 23955016 23955075 -758004 + GA-rich Low_complexity Low_complexity 2 60 0 2130 85 57 0 chrY 23955851 23956133 -756946 + AluY SINE Alu 1 298 -13 210 37 0 0 chrY 23957248 23957275 -755804 + (TCCA)n Simple_repeat Simple_repeat 3 29 0 1908 120 4 0 chrY 23958164 23958430 -754649 + AluSg SINE Alu 4 270 -40 189 64 0 64 chrY 23958437 23958484 -754595 + (CAAAAA)n Simple_repeat Simple_repeat 4 47 0 248 245 0 0 chrY 23958642 23958695 -754384 + (CATA)n Simple_repeat Simple_repeat 2 54 0 1827 169 3 3 chrY 23959609 23959911 -753168 + AluSq SINE Alu 3 304 -9 492 18 0 0 chrY 23960954 23961011 -752068 + (TCCA)n Simple_repeat Simple_repeat 1 57 0 210 307 13 0 chrY 23962030 23962105 -750974 + (CATA)n Simple_repeat Simple_repeat 3 78 0 180 97 0 0 chrY 23963051 23963082 -749997 + (GA)n Simple_repeat Simple_repeat 2 32 0 444 19 0 0 chrY 23964089 23964142 -748937 + (TCCA)n Simple_repeat Simple_repeat 1 53 0 198 0 0 0 chrY 23965609 23965631 -747448 + (TTA)n Simple_repeat Simple_repeat 2 23 0 1821 151 7 4 chrY 23965633 23965911 -747168 - AluSg SINE Alu -31 279 1 21 0 0 0 chrY 23965938 23965959 -747120 + AT_rich Low_complexity Low_complexity 1 21 0 251 277 30 20 chrY 23967655 23967756 -745323 - L1MC4 LINE L1 -1327 6715 6614 425 214 0 7 chrY 23967764 23967904 -745175 + (TA)n Simple_repeat Simple_repeat 1 139 0 351 189 0 27 chrY 23967957 23968068 -745011 + (TA)n Simple_repeat Simple_repeat 2 109 0 6711 137 47 32 chrY 23968069 23969233 -743846 + Tigger1 DNA MER2_type 1 1182 -1236 5521 228 81 28 chrY 23969234 23973232 -739847 + L1M2c LINE L1 14 3697 -3091 2191 74 3 7 chrY 23973232 23973512 -739567 + L1PA5 LINE L1 5860 6154 0 5521 228 81 28 chrY 23973512 23974036 -739043 + L1M2c LINE L1 3697 4192 -2596 2259 167 3 5 chrY 23974042 23974432 -738647 + Tigger1 DNA MER2_type 2029 2417 -1 202 183 28 0 chrY 23974432 23974503 -738576 + (TA)n Simple_repeat Simple_repeat 2 74 0 241 288 0 0 chrY 23975758 23975824 -737255 - L2 LINE L2 -684 2630 2565 568 268 71 5 chrY 23976262 23976486 -736593 - L1ME4a LINE L1 -295 5826 5588 370 324 141 7 chrY 23976660 23976959 -736120 - L1ME4a LINE L1 -893 5253 4915 2174 109 3 3 chrY 23977295 23977597 -735482 - AluSc SINE Alu -7 302 1 7215 52 0 0 chrY 23978134 23979182 -733897 - L1PA5 LINE L1 0 6154 5106 376 333 40 5 chrY 23979279 23979480 -733599 - HAL1b LINE L1 -673 675 468 5590 98 15 7 chrY 23979924 23980747 -732332 - L1PA14 LINE L1 -1 6160 5332 1988 142 20 0 chrY 23981778 23982073 -731006 + AluSx SINE Alu 1 301 -11 186 103 0 0 chrY 23982079 23982108 -730971 + (TA)n Simple_repeat Simple_repeat 2 30 0 411 21 0 0 chrY 23983168 23983216 -729863 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 1726 120 0 39 chrY 23983433 23983691 -729388 + AluSg SINE Alu 33 280 -30 13908 139 38 13 chrY 23983738 23986058 -727021 + L1MA2 LINE L1 1252 3633 -3932 2129 128 0 0 chrY 23986058 23986363 -726716 + AluSc SINE Alu 3 307 -2 13908 139 38 13 chrY 23986363 23986408 -726671 + L1MA2 LINE L1 3633 3675 -3890 2178 131 0 0 chrY 23986418 23986730 -726349 + AluSx SINE Alu 1 312 0 6536 153 14 19 chrY 23986753 23988890 -724189 + L1MA2 LINE L1 5117 7239 -484 2356 109 0 0 chrY 23988890 23989194 -723885 + AluSp SINE Alu 1 304 -9 6536 153 14 19 chrY 23989194 23989605 -723474 + L1MA2 LINE L1 7239 7651 -72 371 136 61 0 chrY 23990302 23990368 -722711 + U2 snRNA snRNA 1 70 -118 628 235 33 77 chrY 23990873 23991056 -722023 + MER5A DNA MER1_type 14 188 -1 711 178 12 150 chrY 23991316 23991569 -721510 - MER20 DNA MER1_type -1 218 1 558 178 16 126 chrY 23992881 23993072 -720007 - MLT1H LTR MaLR -2 547 378 2131 250 46 56 chrY 23993125 23993919 -719160 + L1M2b LINE L1 1516 2344 -4865 1822 181 10 0 chrY 23993920 23994213 -718866 + AluSx SINE Alu 3 298 -14 3062 187 15 39 chrY 23994244 23994369 -718710 + L1M2b LINE L1 2574 2700 -4508 1800 174 3 7 chrY 23994369 23994668 -718411 + AluSx SINE Alu 11 308 -4 3062 187 15 39 chrY 23994668 23995672 -717407 + L1M2b LINE L1 2700 3679 -3529 1517 94 34 0 chrY 23995679 23995913 -717166 + L1MA5 LINE L1 6056 6297 -3 906 256 24 18 chrY 23995981 23996240 -716839 - MLT1H LTR MaLR -248 301 1 4142 238 32 25 chrY 23996537 23997722 -715357 + L1PA12 LINE L1 10 1202 -6379 3111 96 47 10 chrY 23997746 23998256 -714823 + L1PA11 LINE L1 5259 5787 -387 21 0 0 0 chrY 23998963 23998984 -714095 + AT_rich Low_complexity Low_complexity 1 21 0 2779 99 10 0 chrY 23999281 23999673 -713406 + L1PA11 LINE L1 5769 6164 -10 306 248 40 0 chrY 23999749 23999850 -713229 - L1ME3 LINE L1 -9 6153 6049 * 2685 243 77 51 chrY 23999845 24000556 -712523 - L1M4 LINE L1 -1130 5016 4254 1310 175 102 39 chrY 24000556 24000841 -712238 - AluJo SINE Alu -9 303 1 2685 243 77 51 chrY 24000841 24001442 -711637 - L1M4 LINE L1 -1892 4254 3670 428 192 10 0 chrY 24003481 24003585 -709494 + (TA)n Simple_repeat Simple_repeat 2 106 0 2095 123 0 3 chrY 24003775 24004183 -708896 + AluSq SINE Alu 5 411 0 260 252 272 0 chrY 24004236 24004383 -708696 - L1ME LINE L1 -360 5761 5575 306 323 97 23 chrY 24004393 24004610 -708469 - L1ME LINE L1 -781 5552 5320 183 235 0 0 chrY 24005268 24005319 -707760 + (TA)n Simple_repeat Simple_repeat 1 51 0 315 303 20 0 chrY 24007165 24007264 -705815 + GA-rich Low_complexity Low_complexity 2 102 0 5230 136 51 31 chrY 24007400 24007671 -705408 - L1MA8 LINE L1 0 6291 6027 1680 136 115 11 chrY 24007671 24007950 -705129 + AluSc SINE Alu 1 308 -1 5230 136 51 31 chrY 24007950 24008844 -704235 - L1MA8 LINE L1 -264 6027 5110 1081 256 54 21 chrY 24008882 24009307 -703772 - L1M4 LINE L1 -3127 3019 2581 575 298 46 24 chrY 24009531 24009860 -703219 - L1ME LINE L1 -1995 4151 3816 1679 158 26 3 chrY 24009935 24010246 -702833 - L1PA16 LINE L1 -21 6145 5828 2244 116 0 0 chrY 24010246 24010548 -702531 - AluSq SINE Alu -11 302 1 2153 127 3 0 chrY 24010551 24010880 -702199 - AluSx SINE Alu 0 330 1 929 148 59 38 chrY 24010888 24011124 -701955 - L1 LINE L1 -2150 3996 3756 * 6238 133 29 11 chrY 24011123 24012280 -700799 - L1PA15-16 LINE L1 -4365 2484 1307 2304 160 15 0 chrY 24012288 24012682 -700397 - L1PA15-16 LINE L1 -6437 412 13 494 357 58 7 chrY 24012688 24013030 -700049 - L1ME LINE L1 -2316 3830 3468 583 180 0 0 chrY 24013030 24013130 -699949 + AluSg/x SINE Alu 202 301 -9 563 189 119 6 chrY 24013477 24013636 -699443 + MER96B DNA MER1_type? 3 179 -238 347 277 17 8 chrY 24014162 24014281 -698798 - MER112 DNA MER1_type -2 258 139 378 0 0 0 chrY 24014295 24014337 -698742 + (TG)n Simple_repeat Simple_repeat 2 43 0 493 278 16 42 chrY 24014409 24014600 -698479 + MIR3 SINE MIR 23 208 0 1734 150 0 11 chrY 24014660 24014934 -698145 + AluSx SINE Alu 1 271 -41 207 0 0 0 chrY 24014944 24014967 -698112 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 195 42 0 0 chrY 24015590 24015614 -697465 + (TG)n Simple_repeat Simple_repeat 2 25 0 518 226 66 86 chrY 24015937 24016344 -696735 - L1MC5 LINE L1 -158 7803 7405 464 242 47 16 chrY 24016344 24016472 -696607 - MIR SINE MIR -42 220 89 225 0 0 0 chrY 24017797 24017822 -695257 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1779 163 0 0 chrY 24017825 24018102 -694977 - AluSx SINE Alu -25 287 11 23 0 0 0 chrY 24019839 24019862 -693217 + AT_rich Low_complexity Low_complexity 1 23 0 212 300 78 0 chrY 24019862 24019952 -693127 + L3b LINE CR1 1125 1221 -362 2215 135 0 0 chrY 24020170 24020482 -692597 - AluSx SINE Alu 0 312 1 518 331 22 11 chrY 24021222 24021406 -691673 - MER5A DNA MER1_type 0 189 4 209 315 120 19 chrY 24021907 24022123 -690956 + L2 LINE L2 2412 2649 -665 273 250 143 9 chrY 24022206 24022318 -690761 + MIR SINE MIR 81 207 -55 691 169 8 0 chrY 24022591 24022709 -690370 - AluJ SINE Alu -4 308 190 670 231 0 0 chrY 24022715 24022845 -690234 - AluJ SINE Alu -181 131 2 2339 115 3 0 chrY 24022876 24023188 -689891 - AluSp SINE Alu 0 313 1 21 36 0 0 chrY 24023755 24023783 -689296 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chrY 24023891 24023912 -689167 + AT_rich Low_complexity Low_complexity 1 21 0 2154 123 20 0 chrY 24023976 24024277 -688802 + AluSc SINE Alu 1 307 -2 1937 150 17 0 chrY 24024334 24024628 -688451 + AluSx SINE Alu 1 299 -13 958 99 0 0 chrY 24025269 24025390 -687689 - FRAM SINE Alu -28 148 28 2666 204 47 7 chrY 24025390 24025984 -687095 + MER54A LTR ERVL 284 901 0 2811 0 0 0 chrY 24026924 24027225 -685854 - AluYa5 SINE Alu -10 301 1 678 108 117 0 chrY 24028017 24028137 -684942 - MER85 DNA T2_type -2 137 4 1761 167 3 10 chrY 24029504 24029797 -683282 - AluJb SINE Alu -17 295 5 10335 216 23 8 chrY 24031028 24034749 -678330 - L1PA16 LINE L1 -9 6157 2348 2033 132 3 7 chrY 24034751 24035040 -678039 + AluSg SINE Alu 1 288 -22 2017 150 0 0 chrY 24038376 24038669 -674410 - AluSx SINE Alu -19 293 1 1724 204 36 0 chrY 24040111 24040440 -672639 - MER7A DNA MER2_type -7 339 1 21 0 0 0 chrY 24041109 24041130 -671949 + AT_rich Low_complexity Low_complexity 1 21 0 3353 161 5 52 chrY 24041158 24041779 -671300 - LTR14B LTR ERVK 0 608 17 418 297 121 18 chrY 24041874 24042039 -671040 - MER5A DNA MER1_type 0 189 8 229 366 0 21 chrY 24042074 24042167 -670912 - MER5A DNA MER1_type -31 158 68 2362 188 48 30 chrY 24042295 24042795 -670284 - LTR22 LTR ERVK 0 509 1 1650 187 0 14 chrY 24042928 24043217 -669862 + AluJo SINE Alu 1 285 -27 2157 119 0 25 chrY 24043228 24043546 -669533 + AluSq SINE Alu 1 310 -3 447 270 164 40 chrY 24044712 24044938 -668141 + MIR SINE MIR 2 255 -7 252 132 0 0 chrY 24044905 24044943 -668136 + L2 LINE L2 3269 3306 -7 * 232 203 47 16 chrY 24045100 24045164 -667915 - Charlie7 DNA MER1_type 0 2612 2547 805 189 112 0 chrY 24045262 24045405 -667674 - AluSc SINE Alu -16 293 135 543 261 124 20 chrY 24045472 24045721 -667358 - Charlie7 DNA MER1_type -266 2346 2072 1034 129 0 0 chrY 24045748 24045888 -667191 + AluSx SINE Alu 61 200 -112 595 144 0 76 chrY 24045931 24046011 -667068 + AluSx SINE Alu 201 271 -39 207 0 0 0 chrY 24046011 24046034 -667045 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 595 144 0 76 chrY 24046034 24046071 -667008 + AluSx SINE Alu 271 309 -1 1474 176 41 31 chrY 24046158 24046448 -666631 - AluJo SINE Alu -18 294 2 647 166 7 115 chrY 24046471 24046610 -666469 - FLAM_C SINE Alu -18 125 2 2344 92 0 3 chrY 24046683 24046977 -666102 + AluY SINE Alu 1 293 -18 593 242 171 23 chrY 24046981 24047291 -665788 - L1MC5 LINE L1 -302 7659 7304 1841 180 0 0 chrY 24047492 24047792 -665287 + AluJb SINE Alu 1 300 -12 227 295 74 0 chrY 24047797 24047892 -665187 - L1MC4a LINE L1 -1633 6175 6074 853 160 25 6 chrY 24047991 24048317 -664762 + (TATATG)n Simple_repeat Simple_repeat 1 332 0 290 120 0 0 chrY 24048317 24048367 -664712 + L1MC4 LINE L1 6653 6702 -1340 840 174 0 20 chrY 24048371 24048717 -664362 + (TATATG)n Simple_repeat Simple_repeat 1 339 0 225 253 0 22 chrY 24048737 24048828 -664251 + L1MC4 LINE L1 6615 6703 -1339 394 152 22 22 chrY 24048830 24048922 -664157 + (TATATG)n Simple_repeat Simple_repeat 4 95 0 543 269 175 39 chrY 24048923 24049231 -663848 + MER115 DNA AcHobo 54 403 -290 607 191 0 69 chrY 24049248 24049442 -663637 + MER115 DNA AcHobo 511 4021 -10 852 185 25 6 chrY 24050455 24050617 -662462 - FRAM SINE Alu -1 175 11 41933 60 8 3 chrY 24050684 24056808 -656271 + L1PA3 LINE L1 1 6155 0 416 322 65 11 chrY 24057445 24057706 -655373 + L2 LINE L2 2010 2284 -1030 1601 181 4 4 chrY 24057732 24058003 -655076 - AluJb SINE Alu -39 273 3 1190 285 59 42 chrY 24058003 24059368 -653711 - L1ME LINE L1 -4821 1394 70 1625 194 0 3 chrY 24059603 24059908 -653171 + AluJb SINE Alu 1 304 0 435 195 53 26 chrY 24060033 24060146 -652933 + MLT1J2 LTR MaLR 3 118 -332 534 288 94 11 chrY 24060200 24060397 -652682 + MLT1J2 LTR MaLR 238 448 -2 692 207 100 2 chrY 24060752 24060920 -652159 + L1PA16 LINE L1 5975 6160 -3 1083 176 20 0 chrY 24061176 24061375 -651704 - L1MA4A LINE L1 -23 6280 6078 934 237 7 65 chrY 24061446 24061754 -651325 - L1MA10 LINE L1 -13 6321 6032 522 234 257 0 chrY 24062065 24062236 -650843 - MIR SINE MIR -33 229 15 527 250 8 0 chrY 24062301 24062421 -650658 - MIR SINE MIR -65 197 77 2635 51 0 0 chrY 24063851 24064162 -648917 + AluY SINE Alu 1 311 0 1627 200 3 3 chrY 24064589 24064894 -648185 + AluJb SINE Alu 2 306 -6 268 265 0 15 chrY 24064904 24064972 -648107 - MIR3 SINE MIR -32 176 110 350 190 114 0 chrY 24065038 24065117 -647962 - MIR SINE MIR -60 148 61 1735 180 7 16 chrY 24065229 24065535 -647544 - AluJo SINE Alu -9 303 1 461 292 58 27 chrY 24066078 24066624 -646455 + L1MC/D LINE L1 4928 5483 -750 827 176 13 13 chrY 24066646 24066799 -646280 + FAM SINE Alu 1 44 -5 1016 111 0 7 chrY 24066847 24066982 -646097 - AluSq/x SINE Alu -178 134 1 1858 142 80 3 chrY 24067093 24067404 -645675 - MER1B DNA MER1_type -2 335 1 1071 146 0 0 chrY 24068152 24068317 -644762 + AluJb SINE Alu 137 301 -11 475 219 81 8 chrY 24068517 24068640 -644439 - L1MB3 LINE L1 -3 6180 6049 2158 127 0 0 chrY 24068905 24069204 -643875 + AluSx SINE Alu 1 299 -13 287 259 171 19 chrY 24069384 24069542 -643537 - MIR SINE MIR -79 183 2 1653 161 7 11 chrY 24069691 24069964 -643115 - AluJb SINE Alu -40 272 1 717 203 0 8 chrY 24069972 24070095 -642984 - FLAM_C SINE Alu -19 124 3 22 0 0 0 chrY 24071362 24071384 -641695 + AT_rich Low_complexity Low_complexity 1 22 0 236 260 41 14 chrY 24072091 24072164 -640915 + MIR SINE MIR 85 159 -103 252 259 93 28 chrY 24072291 24072399 -640680 - L2 LINE L2 -1 3271 3157 787 254 91 5 chrY 24072645 24072854 -640225 - L1ME1 LINE L1 -12 6154 5928 1051 164 23 143 chrY 24073492 24073876 -639203 + LTR49 LTR ERV1 12 349 -246 325 203 203 49 chrY 24073913 24074056 -639023 + LTR48 LTR ERV1 607 771 -16 2211 212 82 63 chrY 24074128 24074775 -638304 + MER21B LTR ERV1 98 756 -107 1408 102 122 0 chrY 24076557 24076762 -636317 + MER30 DNA MER1_type 1 230 0 1973 144 3 0 chrY 24077524 24077822 -635257 - AluSx SINE Alu -13 299 1 809 181 7 0 chrY 24077934 24078072 -635007 + L1MB4 LINE L1 5342 5480 -694 1501 195 34 3 chrY 24078081 24078379 -634700 + AluJb SINE Alu 1 307 -5 946 189 0 0 chrY 24078413 24078577 -634502 + FRAM SINE Alu 8 171 -5 3685 166 26 3 chrY 24078601 24079262 -633817 + L1MB4 LINE L1 5477 6152 -28 633 197 51 0 chrY 24080710 24080827 -632252 - AluJb SINE Alu -16 296 174 2105 144 0 0 chrY 24081584 24081918 -631161 - AluSq SINE Alu 0 334 1 25 65 0 0 chrY 24082601 24082647 -630432 + AT_rich Low_complexity Low_complexity 1 46 0 2288 119 0 0 chrY 24082838 24083141 -629938 - AluSx SINE Alu -9 303 1 534 267 63 24 chrY 24085371 24085577 -627502 - MIR SINE MIR -48 214 1 181 333 0 18 chrY 24085571 24085628 -627451 + MIR SINE MIR 2 57 -205 * 198 257 83 46 chrY 24086077 24086186 -626893 + L2 LINE L2 1429 1541 -1773 1280 179 28 123 chrY 24086350 24086668 -626411 - AluJo SINE Alu -14 288 1 684 200 0 0 chrY 24086881 24087056 -626023 + (GAATG)n Satellite Satellite 5 179 0 1107 112 0 0 chrY 24087085 24087264 -625815 + (GAATG)n Satellite Satellite 2 180 0 200 182 0 0 chrY 24087267 24087300 -625779 + (CGAAT)n Simple_repeat Simple_repeat 4 36 0 524 200 6 0 chrY 24087301 24087461 -625618 + (GAATG)n Satellite Satellite 4 164 0 822 170 0 0 chrY 24087482 24087653 -625426 + (GAATG)n Satellite Satellite 2 172 0 304 81 81 0 chrY 24087690 24087752 -625327 - HSATII Satellite Satellite -57 113 47 789 176 4 0 chrY 24087761 24087995 -625084 + (GAATG)n Satellite Satellite 1 235 0 243 286 22 0 chrY 24088008 24088099 -624980 + (GAATG)n Satellite Satellite 2 94 0 207 125 0 0 chrY 24288116 24288156 -424923 + (GAATG)n Satellite Satellite 3 42 0 681 179 2 2 chrY 24288169 24288675 -424404 + (GAATG)n Satellite Satellite 1 506 0 706 132 0 53 chrY 24288729 24288918 -424161 + (GAATG)n Satellite Satellite 1 179 0 852 169 0 2 chrY 24289007 24289862 -423217 + (GAATG)n Satellite Satellite 1 852 0 731 177 5 11 chrY 24289903 24290554 -422525 + (GAATG)n Satellite Satellite 1 647 0 954 115 0 0 chrY 24290579 24290744 -422335 + (GAATG)n Satellite Satellite 4 168 0 186 150 0 0 chrY 24290762 24290802 -422277 + (GAATG)n Satellite Satellite 1 40 0 663 192 0 10 chrY 24290827 24291344 -421735 + (GAATG)n Satellite Satellite 1 511 0 664 158 6 6 chrY 24291377 24291554 -421525 + (GAATG)n Satellite Satellite 4 180 0 852 169 1 12 chrY 24291608 24292756 -420323 + (GAATG)n Satellite Satellite 1 1135 0 698 176 5 11 chrY 24292797 24293450 -419629 + (GAATG)n Satellite Satellite 1 649 0 1044 109 0 0 chrY 24293473 24293648 -419431 + (GAATG)n Satellite Satellite 4 178 0 623 184 8 0 chrY 24293666 24293939 -419140 + (GAATG)n Satellite Satellite 1 275 0 279 202 0 0 chrY 24293984 24294068 -419011 + (GAATG)n Satellite Satellite 2 85 0 747 173 0 0 chrY 24294115 24294422 -418657 + (GAATG)n Satellite Satellite 1 307 0 729 163 0 0 chrY 24294434 24294612 -418467 + (GAATG)n Satellite Satellite 3 180 0 664 180 4 2 chrY 24294625 24295145 -417934 + (GAATG)n Satellite Satellite 1 521 0 727 127 0 53 chrY 24295199 24295388 -417691 + (GAATG)n Satellite Satellite 1 179 0 677 188 0 18 chrY 24295441 24295724 -417355 + (GAATG)n Satellite Satellite 1 278 0 843 167 0 2 chrY 24295735 24296347 -416732 + (GAATG)n Satellite Satellite 1 610 0 685 178 5 11 chrY 24296388 24297041 -416038 + (GAATG)n Satellite Satellite 1 649 0 921 121 0 0 chrY 24297064 24297229 -415850 + (GAATG)n Satellite Satellite 4 168 0 186 150 0 0 chrY 24297247 24297287 -415792 + (GAATG)n Satellite Satellite 1 40 0 663 206 0 0 chrY 24297312 24297646 -415433 + (GAATG)n Satellite Satellite 1 334 0 714 176 0 0 chrY 24297693 24298000 -415079 + (GAATG)n Satellite Satellite 1 307 0 729 163 0 0 chrY 24298012 24298190 -414889 + (GAATG)n Satellite Satellite 3 180 0 681 178 2 2 chrY 24298203 24298724 -414355 + (GAATG)n Satellite Satellite 1 521 0 852 168 1 12 chrY 24298786 24299931 -413148 + (GAATG)n Satellite Satellite 1 1131 0 731 175 5 11 chrY 24299972 24300623 -412456 + (GAATG)n Satellite Satellite 1 647 0 954 115 0 0 chrY 24300648 24300813 -412266 + (GAATG)n Satellite Satellite 4 168 0 186 150 0 0 chrY 24300831 24300871 -412208 + (GAATG)n Satellite Satellite 1 40 0 630 209 0 0 chrY 24300896 24301230 -411849 + (GAATG)n Satellite Satellite 1 334 0 747 165 0 0 chrY 24301277 24301771 -411308 + (GAATG)n Satellite Satellite 1 494 0 681 181 2 2 chrY 24301787 24302293 -410786 + (GAATG)n Satellite Satellite 1 506 0 756 173 0 0 chrY 24302327 24302506 -410573 + (GAATG)n Satellite Satellite 1 179 0 208 172 16 16 chrY 24302517 24302581 -410498 + (GAATG)n Satellite Satellite 1 64 0 753 166 0 2 chrY 24302625 24303040 -410039 + (GAATG)n Satellite Satellite 1 413 0 852 177 0 2 chrY 24303057 24303495 -409584 + (GAATG)n Satellite Satellite 1 436 0 731 176 5 11 chrY 24303536 24304189 -408890 + (GAATG)n Satellite Satellite 1 649 0 1062 107 0 0 chrY 24304215 24304392 -408687 + (GAATG)n Satellite Satellite 4 180 0 186 150 0 0 chrY 24304410 24304450 -408629 + (GAATG)n Satellite Satellite 1 40 0 663 206 0 0 chrY 24304475 24304809 -408270 + (GAATG)n Satellite Satellite 1 334 0 747 176 0 0 chrY 24304856 24305163 -407916 + (GAATG)n Satellite Satellite 1 307 0 741 163 0 0 chrY 24305175 24305353 -407726 + (GAATG)n Satellite Satellite 3 180 0 681 180 2 2 chrY 24305366 24305887 -407192 + (GAATG)n Satellite Satellite 1 521 0 885 168 1 12 chrY 24305941 24307089 -405990 + (GAATG)n Satellite Satellite 1 1135 0 718 175 5 11 chrY 24307130 24307783 -405296 + (GAATG)n Satellite Satellite 1 649 0 1062 107 0 0 chrY 24307809 24307986 -405093 + (GAATG)n Satellite Satellite 4 180 0 186 150 0 0 chrY 24308004 24308044 -405035 + (GAATG)n Satellite Satellite 1 40 0 663 206 0 0 chrY 24308069 24308403 -404676 + (GAATG)n Satellite Satellite 1 334 0 747 173 0 0 chrY 24308450 24308757 -404322 + (GAATG)n Satellite Satellite 1 307 0 729 163 0 0 chrY 24308769 24308947 -404132 + (GAATG)n Satellite Satellite 3 180 0 681 180 2 2 chrY 24308960 24309481 -403598 + (GAATG)n Satellite Satellite 1 521 0 727 170 2 27 chrY 24309535 24309988 -403091 + (GAATG)n Satellite Satellite 1 441 0 837 171 0 2 chrY 24310015 24310683 -402396 + (GAATG)n Satellite Satellite 1 666 0 731 175 5 11 chrY 24310724 24311377 -401702 + (GAATG)n Satellite Satellite 1 649 0 783 161 0 0 chrY 24311408 24311588 -401491 + (GAATG)n Satellite Satellite 1 180 0 663 206 0 0 chrY 24311628 24311962 -401117 + (GAATG)n Satellite Satellite 1 334 0 759 165 0 8 chrY 24312009 24312588 -400491 + (GAATG)n Satellite Satellite 1 574 0 446 192 0 28 chrY 24312648 24312830 -400249 + (GAATG)n Satellite Satellite 4 180 0 598 169 6 6 chrY 24312863 24313040 -400039 + (GAATG)n Satellite Satellite 4 180 0 685 169 2 27 chrY 24313094 24313547 -399532 + (GAATG)n Satellite Satellite 1 441 0 837 180 1 4 chrY 24313574 24314539 -398540 + (GAATG)n Satellite Satellite 1 961 0 718 165 3 18 chrY 24314594 24314936 -398143 + (GAATG)n Satellite Satellite 1 336 0 909 119 0 0 chrY 24314959 24315119 -397960 + (GAATG)n Satellite Satellite 4 163 0 186 150 0 0 chrY 24315137 24315177 -397902 + (GAATG)n Satellite Satellite 1 40 0 663 206 0 0 chrY 24315202 24315536 -397543 + (GAATG)n Satellite Satellite 1 334 0 698 173 3 0 chrY 24315583 24315889 -397190 + (GAATG)n Satellite Satellite 1 307 0 729 163 0 0 chrY 24315901 24316079 -397000 + (GAATG)n Satellite Satellite 3 180 0 681 173 2 2 chrY 24316092 24316624 -396455 + (GAATG)n Satellite Satellite 1 532 0 727 165 2 27 chrY 24316667 24317120 -395959 + (GAATG)n Satellite Satellite 1 441 0 774 162 0 0 chrY 24317147 24317326 -395753 + (GAATG)n Satellite Satellite 2 180 0 840 169 0 2 chrY 24317343 24317782 -395297 + (GAATG)n Satellite Satellite 1 437 0 777 173 4 9 chrY 24317841 24318660 -394419 + (GAATG)n Satellite Satellite 1 814 0 186 150 0 0 chrY 24318680 24318720 -394359 + (GAATG)n Satellite Satellite 1 40 0 600 210 0 0 chrY 24318741 24319064 -394015 + (GAATG)n Satellite Satellite 1 323 0 698 173 3 0 chrY 24319111 24319417 -393662 + (GAATG)n Satellite Satellite 1 307 0 729 163 0 0 chrY 24319429 24319607 -393472 + (GAATG)n Satellite Satellite 3 180 0 685 180 2 2 chrY 24319620 24320141 -392938 + (GAATG)n Satellite Satellite 1 521 0 727 180 2 30 chrY 24320195 24320720 -392359 + (GAATG)n Satellite Satellite 1 510 0 852 172 2 8 chrY 24320731 24322037 -391042 + (GAATG)n Satellite Satellite 1 1297 0 966 118 0 0 chrY 24322060 24322230 -390849 + (GAATG)n Satellite Satellite 4 173 0 186 150 0 0 chrY 24322248 24322288 -390791 + (GAATG)n Satellite Satellite 1 40 0 663 206 0 0 chrY 24322313 24322647 -390432 + (GAATG)n Satellite Satellite 1 334 0 747 173 0 0 chrY 24322694 24323001 -390078 + (GAATG)n Satellite Satellite 1 307 0 741 163 0 0 chrY 24323013 24323191 -389888 + (GAATG)n Satellite Satellite 3 180 0 664 182 2 2 chrY 24323204 24323725 -389354 + (GAATG)n Satellite Satellite 1 521 0 852 162 1 14 chrY 24323779 24324668 -388411 + (GAATG)n Satellite Satellite 1 877 0 705 171 0 0 chrY 24324734 24324909 -388170 + (GAATG)n Satellite Satellite 2 176 0 700 176 4 11 chrY 24324968 24325502 -387577 + (GAATG)n Satellite Satellite 1 530 0 271 185 9 9 chrY 24325513 24325621 -387458 + (GAATG)n Satellite Satellite 2 109 0 999 112 0 0 chrY 24325644 24325814 -387265 + (GAATG)n Satellite Satellite 4 173 0 186 150 0 0 chrY 24325832 24325872 -387207 + (GAATG)n Satellite Satellite 1 40 0 623 205 0 3 chrY 24325897 24326232 -386847 + (GAATG)n Satellite Satellite 1 333 0 747 173 0 0 chrY 24326279 24326586 -386493 + (GAATG)n Satellite Satellite 1 307 0 741 163 0 0 chrY 24326598 24326776 -386303 + (GAATG)n Satellite Satellite 3 180 0 681 178 2 2 chrY 24326789 24327310 -385769 + (GAATG)n Satellite Satellite 1 521 0 727 127 0 53 chrY 24327364 24327553 -385526 + (GAATG)n Satellite Satellite 1 179 0 644 187 0 18 chrY 24327606 24327889 -385190 + (GAATG)n Satellite Satellite 1 277 0 852 168 0 3 chrY 24327900 24328513 -384566 + (GAATG)n Satellite Satellite 1 611 0 731 175 5 11 chrY 24328554 24329207 -383872 + (GAATG)n Satellite Satellite 1 649 0 1029 113 0 0 chrY 24329233 24329410 -383669 + (GAATG)n Satellite Satellite 4 180 0 186 150 0 0 chrY 24329428 24329468 -383611 + (GAATG)n Satellite Satellite 1 40 0 663 206 0 0 chrY 24329493 24329827 -383252 + (GAATG)n Satellite Satellite 1 334 0 714 176 0 0 chrY 24329874 24330181 -382898 + (GAATG)n Satellite Satellite 1 307 0 729 163 0 0 chrY 24330193 24330371 -382708 + (GAATG)n Satellite Satellite 3 180 0 648 183 0 0 chrY 24330384 24330620 -382459 + (GAATG)n Satellite Satellite 1 236 0 639 179 0 0 chrY 24330643 24330822 -382257 + (GAATG)n Satellite Satellite 2 180 0 900 153 3 3 chrY 24330838 24331191 -381888 + (GAATG)n Satellite Satellite 1 353 0 945 123 0 0 chrY 24331235 24331405 -381674 + (GAATG)n Satellite Satellite 4 173 0 186 150 0 0 chrY 24331423 24331463 -381616 + (GAATG)n Satellite Satellite 1 40 0 663 203 3 0 chrY 24331488 24331821 -381258 + (GAATG)n Satellite Satellite 1 334 0 235 241 0 52 chrY 24331864 24331980 -381099 + (TGGA)n Simple_repeat Simple_repeat 3 112 0 690 161 0 0 chrY 24332104 24332278 -380801 + (GAATG)n Satellite Satellite 1 174 0 276 164 0 0 chrY 24332299 24332366 -380713 + (GAATG)n Satellite Satellite 3 69 0 696 169 0 0 chrY 24332378 24332556 -380523 + (GAATG)n Satellite Satellite 3 180 0 681 180 2 2 chrY 24332569 24333090 -379989 + (GAATG)n Satellite Satellite 1 521 0 852 170 2 12 chrY 24333144 24334290 -378789 + (GAATG)n Satellite Satellite 1 1134 0 663 178 5 11 chrY 24334331 24334984 -378095 + (GAATG)n Satellite Satellite 1 649 0 795 156 0 0 chrY 24335021 24335200 -377879 + (GAATG)n Satellite Satellite 1 179 0 663 206 0 0 chrY 24335225 24335559 -377520 + (GAATG)n Satellite Satellite 1 334 0 759 173 0 0 chrY 24335606 24335913 -377166 + (GAATG)n Satellite Satellite 1 307 0 729 163 0 0 chrY 24335925 24336103 -376976 + (GAATG)n Satellite Satellite 3 180 0 681 179 2 2 chrY 24336116 24336622 -376457 + (GAATG)n Satellite Satellite 1 506 0 706 132 0 53 chrY 24336676 24336865 -376214 + (GAATG)n Satellite Satellite 1 179 0 852 158 0 2 chrY 24336954 24337565 -375514 + (GAATG)n Satellite Satellite 1 609 0 718 180 2 12 chrY 24337631 24338518 -374561 + (GAATG)n Satellite Satellite 1 878 0 1002 120 0 0 chrY 24338541 24338716 -374363 + (GAATG)n Satellite Satellite 4 178 0 186 150 0 0 chrY 24338734 24338774 -374305 + (GAATG)n Satellite Satellite 1 40 0 663 206 0 0 chrY 24338799 24339133 -373946 + (GAATG)n Satellite Satellite 1 334 0 747 173 0 0 chrY 24339180 24339487 -373592 + (GAATG)n Satellite Satellite 1 307 0 729 163 0 0 chrY 24339499 24339677 -373402 + (GAATG)n Satellite Satellite 3 180 0 681 178 2 2 chrY 24339690 24340211 -372868 + (GAATG)n Satellite Satellite 1 521 0 783 152 0 0 chrY 24340260 24340424 -372655 + (GAATG)n Satellite Satellite 1 164 0 208 172 16 16 chrY 24340435 24340499 -372580 + (GAATG)n Satellite Satellite 1 64 0 843 168 0 2 chrY 24340543 24341413 -371666 + (GAATG)n Satellite Satellite 1 867 0 710 180 2 10 chrY 24341484 24342107 -370972 + (GAATG)n Satellite Satellite 1 617 0 954 115 0 0 chrY 24342130 24342295 -370784 + (GAATG)n Satellite Satellite 4 168 0 186 150 0 0 chrY 24342313 24342353 -370726 + (GAATG)n Satellite Satellite 1 40 0 663 206 0 0 chrY 24342378 24342712 -370367 + (GAATG)n Satellite Satellite 1 334 0 726 176 0 0 chrY 24342759 24343066 -370013 + (GAATG)n Satellite Satellite 1 307 0 741 163 0 0 chrY 24343078 24343256 -369823 + (GAATG)n Satellite Satellite 3 180 0 681 182 2 2 chrY 24343269 24343790 -369289 + (GAATG)n Satellite Satellite 1 521 0 804 173 1 13 chrY 24343844 24344887 -368192 + (GAATG)n Satellite Satellite 1 1030 0 279 193 0 0 chrY 24344919 24345007 -368072 + (GAATG)n Satellite Satellite 2 89 0 286 167 167 24 chrY 24545053 24545137 -167942 + MLT1I LTR MaLR 281 376 -33 787 219 71 5 chrY 24545156 24545393 -167686 + L1MC5 LINE L1 6999 7249 -728 1250 192 60 121 chrY 24545397 24546105 -166974 + L1MC5 LINE L1 7238 7827 -134 720 271 4 65 chrY 24546109 24546356 -166723 - L2 LINE L2 -859 2455 2224 1103 283 27 11 chrY 24546471 24546846 -166233 + L1MC4a LINE L1 5519 5899 -1909 217 250 0 0 chrY 24546879 24546923 -166156 + (TATATG)n Simple_repeat Simple_repeat 3 46 0 743 293 57 0 chrY 24547164 24547376 -165703 + MIR SINE MIR 13 236 -26 2265 79 28 3 chrY 24547503 24547793 -165286 - AluSq SINE Alu -16 297 1 753 337 118 18 chrY 24548048 24548490 -164589 - L3 LINE CR1 -7 1570 1085 578 233 105 57 chrY 24549127 24549355 -163724 + L2 LINE L2 2035 2273 -1041 371 305 92 7 chrY 24549622 24549917 -163162 - L1M4 LINE L1 -2382 3764 3445 627 292 21 7 chrY 24550013 24550297 -162782 - L1M4 LINE L1 -3582 2564 2277 1610 222 50 18 chrY 24550304 24550502 -162577 + MER97b DNA MER1_type? 182 372 -681 2800 126 21 2 chrY 24550502 24550922 -162157 + MSTA LTR MaLR 1 428 0 1610 222 50 18 chrY 24550922 24551119 -161960 + MER97b DNA MER1_type? 372 590 -463 5596 97 10 8 chrY 24551119 24551938 -161141 + L1PB3 LINE L1 5335 6154 0 869 201 47 44 chrY 24551948 24552222 -160857 + MER97a DNA MER1_type? 596 870 -24 2897 176 58 11 chrY 24552241 24552775 -160304 - MER21B LTR ERV1 -30 833 275 1254 209 21 86 chrY 24552775 24552828 -160251 - L1ME LINE L1 -353 5813 5758 2167 108 10 0 chrY 24552828 24553123 -159956 - AluSx SINE Alu -14 298 1 1254 209 21 86 chrY 24553123 24553313 -159766 - L1ME LINE L1 -408 5758 5601 2316 112 0 0 chrY 24553313 24553626 -159453 + AluSq SINE Alu 1 313 0 1254 209 21 86 chrY 24553626 24553763 -159316 - L1ME LINE L1 -565 5601 5457 1900 205 101 19 chrY 24553972 24554485 -158594 - L1ME LINE L1 -850 5296 4742 4765 230 85 32 chrY 24555487 24556128 -156951 - L1ME LINE L1 -1390 4756 4151 2169 101 40 0 chrY 24556128 24556454 -156625 - L1MA1 LINE L1 -6 6296 5958 4765 230 85 32 chrY 24556454 24557515 -155564 - L1ME LINE L1 -1995 4151 2963 300 122 0 20 chrY 24557755 24557804 -155275 - L1PB4 LINE L1 -30 6126 6079 825 173 0 0 chrY 24557822 24557949 -155130 - FLAM_C SINE Alu -6 127 1 3143 204 46 1 chrY 24557950 24558696 -154383 - L1ME LINE L1 -3171 2975 2197 1192 329 61 79 chrY 24559153 24560080 -152999 - L2 LINE L2 -50 3222 2280 2473 56 0 31 chrY 24560080 24560399 -152680 + AluY SINE Alu 1 309 -2 7363 15 0 1 chrY 24560399 24561268 -151811 + L1PA3 LINE L1 5311 6155 0 1192 329 61 79 chrY 24561268 24561644 -151435 - L2 LINE L2 -990 2282 1945 498 265 152 30 chrY 24561710 24561940 -151139 + MIR SINE MIR 4 261 -1 215 255 0 0 chrY 24562247 24562298 -150781 - L2 LINE L2 -2885 429 379 201 256 0 0 chrY 24562404 24562443 -150636 + L2 LINE L2 3265 3303 -10 2488 282 90 5 chrY 24562504 24563436 -149643 - L2 LINE L2 -157 3156 1990 637 265 45 83 chrY 24563607 24563920 -149159 + LTR16C LTR ERVL 160 460 -31 645 236 37 6 chrY 24563940 24564101 -148978 - L2 LINE L2 -1323 1991 1826 663 263 180 25 chrY 24564103 24564419 -148660 - L2 LINE L2 -1901 1413 1049 340 281 22 0 chrY 24564511 24564600 -148479 + MER94 DNA DNA 44 134 0 228 254 0 36 chrY 24564636 24564691 -148388 + MIR SINE MIR 13 65 -197 24 85 0 0 chrY 24565460 24565519 -147560 + AT_rich Low_complexity Low_complexity 1 59 0 234 174 0 22 chrY 24566393 24566439 -146640 - MIR SINE MIR -110 152 108 495 323 1 0 chrY 24566459 24566607 -146472 + MIR SINE MIR 2 151 -57 380 202 75 11 chrY 24566612 24566706 -146373 - MER5B DNA MER1_type -6 172 73 262 121 17 17 chrY 24566923 24566981 -146098 + CT-rich Low_complexity Low_complexity 1 58 0 494 277 20 40 chrY 24569182 24569330 -143749 + MIR3 SINE MIR 33 177 -31 183 218 0 73 chrY 24569298 24569353 -143726 + L3 LINE CR1 1519 1569 -8 * 1069 263 22 0 chrY 24569872 24570104 -142975 + MIR SINE MIR 22 258 -4 423 38 0 0 chrY 24570406 24570459 -142620 + (TA)n Simple_repeat Simple_repeat 2 54 0 890 257 0 29 chrY 24572023 24572229 -140850 + MIR3 SINE MIR 5 204 -4 188 182 23 0 chrY 24572752 24572796 -140283 + GA-rich Low_complexity Low_complexity 4 48 0 297 0 0 0 chrY 24574753 24574786 -138293 + (TA)n Simple_repeat Simple_repeat 2 34 0 317 266 0 89 chrY 24576019 24576143 -136936 + MIR3 SINE MIR 64 176 -32 288 0 0 0 chrY 24577438 24577470 -135609 + (GA)n Simple_repeat Simple_repeat 1 32 0 446 331 86 0 chrY 24578582 24578733 -134346 + MIR3 SINE MIR 41 204 -4 22 0 0 0 chrY 24579779 24579801 -133278 + AT_rich Low_complexity Low_complexity 1 22 0 202 261 0 0 chrY 24579825 24579871 -133208 + (CG)n Simple_repeat Simple_repeat 2 47 0 324 0 0 0 chrY 24580159 24580195 -132884 + (CAAAA)n Simple_repeat Simple_repeat 5 40 0 762 198 0 4 chrY 24580314 24580573 -132506 + CT-rich Low_complexity Low_complexity 1 257 0 236 189 19 19 chrY 24581249 24581302 -131777 - L2 LINE L2 0 3313 3261 192 283 81 30 chrY 24581491 24581590 -131489 + MIR SINE MIR 42 145 -63 530 279 68 26 chrY 24581591 24581781 -131298 + MIR3 SINE MIR 2 199 -9 195 246 0 0 chrY 24581907 24581964 -131115 + (TG)n Simple_repeat Simple_repeat 2 58 0 301 204 0 0 chrY 24582061 24582115 -130964 - L2 LINE L2 -3 3310 3257 182 288 15 15 chrY 24582139 24582205 -130874 + MIR SINE MIR 50 115 -147 239 278 261 0 chrY 24582479 24582594 -130485 - L2 LINE L2 0 3272 3128 * 1064 241 13 8 chrY 24582588 24582825 -130254 - MIR SINE MIR -24 238 1 2072 163 31 3 chrY 24582885 24583240 -129839 + MLT1A1 LTR MaLR 1 365 0 356 278 74 137 chrY 24583242 24583541 -129538 + L2 LINE L2 2993 3272 0 404 219 9 57 chrY 24583811 24583916 -129163 - MIR3 SINE MIR -94 114 15 3482 109 10 23 chrY 24584837 24585413 -127666 - L1PA16 LINE L1 -84 6082 5448 319 284 3 14 chrY 24585863 24585942 -127137 - MIR SINE MIR -123 85 5 3232 97 16 16 chrY 24586218 24586704 -126375 + L1PA16 LINE L1 5353 5838 -328 1926 165 0 23 chrY 24587175 24587520 -125559 + MER1B DNA MER1_type 1 337 0 447 229 76 17 chrY 24587719 24587837 -125242 + MIR SINE MIR 28 152 -110 273 284 12 25 chrY 24588104 24588185 -124894 - L2 LINE L2 -191 3081 3002 239 203 152 51 chrY 24588417 24588496 -124583 - L2 LINE L2 0 3272 3186 1548 117 164 8 chrY 24588750 24589006 -124073 + AluSg1 SINE Alu 1 296 -13 267 258 15 0 chrY 24589725 24589791 -123288 + MIR SINE MIR 73 139 -69 211 222 0 0 chrY 24589891 24589936 -123143 + L2 LINE L2 3269 3313 0 209 348 0 0 chrY 24590083 24590152 -122927 - L2 LINE L2 -697 2617 2549 446 316 13 32 chrY 24590283 24590438 -122641 - MER5A DNA MER1_type -2 187 36 335 250 12 0 chrY 24590519 24590599 -122480 + L2 LINE L2 2234 2314 -1000 1449 271 35 28 chrY 24590630 24591181 -121898 - L2 LINE L2 -226 3087 2529 719 286 97 4 chrY 24592439 24592666 -120413 - MIR SINE MIR -12 250 3 4844 191 28 15 chrY 24593108 24594996 -118083 + L1MB7 LINE L1 4277 6182 -2 1065 264 92 9 chrY 24595072 24595540 -117539 - L1MC/D LINE L1 -778 5405 5254 351 278 28 81 chrY 24595890 24596087 -116992 - HAL1 LINE L1 -1055 1452 1269 378 0 0 0 chrY 24596087 24596129 -116950 + (TTTTA)n Simple_repeat Simple_repeat 3 44 0 351 278 28 81 chrY 24596129 24596179 -116900 - HAL1 LINE L1 -1238 1269 1218 531 316 49 84 chrY 24596374 24596840 -116239 + LTR67 LTR ERVL 2 451 -106 1651 271 80 13 chrY 24596848 24597383 -115696 + L2 LINE L2 822 1392 -1922 1849 262 42 62 chrY 24597386 24597620 -115459 + L2 LINE L2 1876 2113 -1201 2688 82 25 0 chrY 24597620 24597987 -115092 - L1PA16 LINE L1 -9 6157 5782 1849 262 42 62 chrY 24597987 24598344 -114735 + L2 LINE L2 2113 2455 -859 1121 335 45 12 chrY 24598344 24598857 -114222 + L2 LINE L2 2770 3301 -12 580 230 223 0 chrY 24599984 24600249 -112830 + MER5C DNA MER1_type 1 324 0 236 337 171 15 chrY 24600680 24600885 -112194 + L3 LINE CR1 1336 1572 -5 536 270 86 0 chrY 24602260 24602423 -110656 - MIR SINE MIR -2 260 84 496 128 108 0 chrY 24604135 24604237 -108842 - L1MB4 LINE L1 -255 5925 5813 347 248 83 33 chrY 24604469 24604590 -108489 - MIR SINE MIR -46 216 90 11481 181 18 2 chrY 24604781 24607010 -106069 - L1PA12 LINE L1 -2701 4883 2618 5051 51 8 7 chrY 24607016 24608042 -105037 - MER11A LTR ERVK 0 1266 1 4085 243 29 43 chrY 24608044 24609628 -103451 - L1PA12 LINE L1 -4960 2624 7 1006 262 38 26 chrY 24609632 24610056 -103023 - L1M4 LINE L1 -775 5371 4943 625 325 66 66 chrY 24610142 24610747 -102332 + L2 LINE L2 2648 3252 -20 400 88 4 0 chrY 24610747 24610805 -102274 + L1PA8A LINE L1 5711 5770 -361 * 3751 230 42 19 chrY 24610804 24613331 -99748 + L1MCa LINE L1 831 3566 -2860 7188 122 50 48 chrY 24613331 24614595 -98484 + Tigger1 DNA MER2_type 1 1266 -1152 436 192 8 8 chrY 24614620 24614740 -98339 + (TA)n Simple_repeat Simple_repeat 1 120 0 15141 161 27 10 chrY 24614751 24615723 -97356 - L1MA3 LINE L1 -11 7713 6759 2949 137 40 4 chrY 24615723 24616219 -96860 - MER75 DNA T2_type 0 514 1 15141 161 27 10 chrY 24616219 24619227 -93852 - L1MA3 LINE L1 -965 6759 3661 37270 80 6 11 chrY 24619230 24625249 -87830 + L1PA6 LINE L1 145 6132 -22 21398 141 30 18 chrY 24625257 24625525 -87554 - L1MA3 LINE L1 -3892 3673 3410 2077 125 7 0 chrY 24625525 24625814 -87265 - AluSx SINE Alu -21 291 1 21398 141 30 18 chrY 24625814 24629153 -83926 - L1MA3 LINE L1 -4155 3410 22 31 26 0 0 chrY 24629635 24629673 -83406 + AT_rich Low_complexity Low_complexity 1 38 0 372 247 172 48 chrY 24629847 24630033 -83046 + L1M4b LINE L1 21 229 -6630 3974 55 2 0 chrY 24630156 24630649 -82430 + L1PA8 LINE L1 5662 6155 -17 2021 112 31 0 chrY 24630886 24631042 -82037 - AluSx SINE Alu -16 296 125 405 0 0 0 chrY 24631042 24631087 -81992 + (TA)n Simple_repeat Simple_repeat 2 46 0 2021 112 31 0 chrY 24631087 24631217 -81862 - AluSx SINE Alu -187 125 1 251 282 0 13 chrY 24631239 24631317 -81762 + L1M4b LINE L1 1111 1187 -5668 664 297 116 8 chrY 24631375 24631910 -81169 + L1M4b LINE L1 1188 1780 -5075 * 19626 153 40 14 chrY 24631902 24634864 -78215 + L1MA2 LINE L1 8 2892 -4831 880 54 0 0 chrY 24634864 24634975 -78104 + L1PA8 LINE L1 6061 6171 -1 19626 153 40 14 chrY 24634975 24639111 -73968 + L1MA2 LINE L1 2892 7288 -435 1807 129 40 20 chrY 24639114 24639463 -73616 + L1MA2 LINE L1 7368 7723 0 1171 254 44 20 chrY 24639476 24639914 -73165 + L1M4b LINE L1 1875 2380 -4577 2934 227 82 14 chrY 24639934 24641154 -71925 + L1M4b LINE L1 2761 4029 -2928 3675 254 45 24 chrY 24641161 24644166 -68913 - L1MCc LINE L1 -2584 4357 1121 20565 25 1 1 chrY 24644237 24647477 -65602 + L1PA2 LINE L1 2936 6175 0 1954 103 6 69 chrY 24647479 24647798 -65281 + AluSc SINE Alu 1 299 -10 294 302 123 74 chrY 24647867 24648315 -64764 - L2 LINE L2 -1 3271 2782 1666 170 0 61 chrY 24648482 24648642 -64437 - AluJo SINE Alu -19 293 160 2043 134 7 3 chrY 24648642 24648940 -64139 - AluSp SINE Alu -14 299 1 1666 170 0 61 chrY 24648940 24649091 -63988 - AluJo SINE Alu -152 160 1 24 0 0 0 chrY 24650147 24650171 -62908 + AT_rich Low_complexity Low_complexity 1 24 0 2045 132 7 0 chrY 24650218 24650547 -62532 - AluSx SINE Alu 0 312 1 503 186 0 0 chrY 24650564 24650666 -62413 - FLAM_A SINE Alu -1 141 40 556 282 215 61 chrY 24650759 24651417 -61662 + L2 LINE L2 2366 2921 -351 1792 137 7 4 chrY 24651417 24651687 -61392 + AluSx SINE Alu 1 271 -41 1299 57 0 0 chrY 24651687 24651846 -61233 + L1PA3 LINE L1 5990 6148 -7 556 282 215 61 chrY 24651846 24651946 -61133 + L2 LINE L2 2920 3223 -49 544 171 0 0 chrY 24653151 24653239 -59840 + FLAM_A SINE Alu 31 118 -24 29 28 0 0 chrY 24653239 24653275 -59804 + AT_rich Low_complexity Low_complexity 1 36 0 1165 183 9 14 chrY 24653398 24653639 -59440 - AluSq SINE Alu 0 313 80 356 294 98 25 chrY 24653825 24653988 -59091 + L1M4 LINE L1 3406 3580 -2566 434 190 0 99 chrY 24653997 24654118 -58961 - FLAM_A SINE Alu -13 129 21 546 138 0 0 chrY 24654151 24654231 -58848 - AluJ/FLAM SINE Alu -232 80 1 339 342 19 0 chrY 24654231 24654392 -58687 - L1M4 LINE L1 -2388 3758 3595 2153 98 0 24 chrY 24654398 24654695 -58384 + AluY SINE Alu 1 290 -21 331 120 0 0 chrY 24654704 24654754 -58325 + FRAM/FAM SINE Alu 20 69 -97 2172 115 7 0 chrY 24654996 24655292 -57787 + AluSx SINE Alu 1 298 -14 379 275 144 25 chrY 24655691 24655851 -57228 + MIR SINE MIR 80 258 -4 225 118 0 59 chrY 24655857 24655908 -57171 - L1MB4 LINE L1 -1 6179 6132 340 135 14 40 chrY 24656045 24656118 -56961 - MLT1F LTR MaLR -3 564 494 360 255 11 11 chrY 24656118 24656212 -56867 + MLT1E LTR MaLR 1 94 -560 893 219 119 137 chrY 24656240 24656701 -56378 + MLT1E LTR MaLR 78 530 -63 2140 136 10 0 chrY 24656704 24657014 -56065 - AluSp SINE Alu 0 313 1 3339 90 4 0 chrY 24657020 24657477 -55602 + L1PB1 LINE L1 5692 6150 -1 226 162 91 131 chrY 24657545 24657644 -55435 + MLT1E LTR MaLR 499 593 0 1325 267 129 2 chrY 24657645 24658057 -55022 - MLT1F LTR MaLR -78 464 1 319 205 8 31 chrY 24658079 24658206 -54873 - L1M4 LINE L1 -2931 3215 3092 1379 178 6 122 chrY 24658240 24658577 -54502 - AluJo SINE Alu -9 303 6 347 269 9 0 chrY 24658697 24658805 -54274 - L1ME3A LINE L1 -11 6159 6051 523 240 46 6 chrY 24659305 24659480 -53599 - L1MC4a LINE L1 -1910 5898 5717 1518 227 120 11 chrY 24659480 24659509 -53570 + MLT1D LTR MaLR 1 25 -480 2143 119 0 0 chrY 24659509 24659802 -53277 + AluY SINE Alu 1 293 -18 1518 227 120 11 chrY 24659802 24660222 -52857 + MLT1D LTR MaLR 25 499 -6 701 251 117 12 chrY 24660234 24660481 -52598 - L1MC4a LINE L1 -2083 5725 5453 369 0 0 0 chrY 24661183 24661224 -51855 + (TG)n Simple_repeat Simple_repeat 2 42 0 2091 109 17 10 chrY 24661365 24661667 -51412 - AluSq SINE Alu -9 304 1 238 294 81 19 chrY 24662340 24662500 -50579 + MIR SINE MIR 57 226 -36 180 0 0 0 chrY 24662937 24662957 -50122 + (TA)n Simple_repeat Simple_repeat 2 21 0 314 287 83 0 chrY 24663019 24663127 -49952 + L2 LINE L2 3156 3272 0 230 226 59 49 chrY 24663261 24663363 -49716 - MER106B DNA MER1_type -904 155 53 907 186 141 34 chrY 24663885 24664206 -48873 - LTR37A LTR ERV1 0 426 56 1643 183 14 14 chrY 24664206 24664491 -48588 + AluJb SINE Alu 2 286 -26 907 186 141 34 chrY 24664491 24664551 -48528 - LTR37A LTR ERV1 -370 56 4 2194 106 3 10 chrY 24664701 24664994 -48085 - AluSc SINE Alu -16 293 3 983 172 25 34 chrY 24665177 24665413 -47666 + L1MB3 LINE L1 5676 5913 -256 305 251 63 64 chrY 24665432 24665720 -47359 + MER39 LTR ERV1 23 520 -187 1306 176 181 20 chrY 24665723 24666127 -46952 + LTR54B LTR ERV1 8 476 -22 225 214 0 0 chrY 24666201 24666243 -46836 + MER34 LTR ERV1 370 411 -131 485 189 79 24 chrY 24666279 24666406 -46673 + MER34 LTR ERV1 409 542 0 1222 127 21 38 chrY 24666406 24666465 -46614 + L1MB3 LINE L1 5910 5968 -215 1555 190 30 14 chrY 24666465 24666760 -46319 + AluJo SINE Alu 1 300 -12 1222 127 21 38 chrY 24666760 24666936 -46143 + L1MB3 LINE L1 5968 6141 -42 1036 121 6 19 chrY 24666939 24667096 -45983 + AluSc SINE Alu 135 289 -20 279 0 0 0 chrY 24667096 24667127 -45952 + (TA)n Simple_repeat Simple_repeat 1 31 0 375 309 67 24 chrY 24667143 24667308 -45771 - MIR SINE MIR -11 251 80 2064 135 0 0 chrY 24667707 24668004 -45075 - AluSx SINE Alu -15 297 1 326 222 111 9 chrY 24669543 24669651 -43428 - L1M3c LINE L1 -1530 4852 4734 1107 231 140 11 chrY 24669670 24670120 -42959 - L1MC4 LINE L1 -1983 5993 5486 1218 241 113 38 chrY 24670123 24670834 -42245 - L1MC4 LINE L1 -2665 3415 2652 267 280 65 0 chrY 24670853 24670960 -42119 - L1MC4 LINE L1 -5906 164 51 1746 186 10 0 chrY 24671019 24671314 -41765 - AluJb SINE Alu -14 298 1 431 260 65 103 chrY 24671331 24671674 -41405 - L1M3c LINE L1 -2412 3970 3616 1927 171 0 0 chrY 24671674 24671967 -41112 + AluJb SINE Alu 3 295 -17 431 260 65 103 chrY 24671967 24672033 -41046 - L1M3c LINE L1 -2766 3616 3549 1904 163 0 0 chrY 24672033 24672322 -40757 - AluJb SINE Alu -23 289 1 431 260 65 103 chrY 24672322 24672457 -40622 - L1M3c LINE L1 -2833 3549 3438 792 241 0 0 chrY 24672461 24672623 -40456 + AluJb SINE Alu 134 295 -17 351 268 153 33 chrY 24672626 24672750 -40329 - L1M3c LINE L1 -2943 3439 3285 2082 89 89 0 chrY 24672750 24673030 -40049 - AluSc SINE Alu -4 305 1 351 268 153 33 chrY 24673030 24673088 -39991 - L1M3c LINE L1 -3097 3285 3235 1342 163 9 5 chrY 24673088 24673303 -39776 + AluJb SINE Alu 85 300 -12 343 276 158 7 chrY 24673471 24673886 -39193 - L1M3c LINE L1 -3382 3000 2518 198 0 0 0 chrY 24673886 24673908 -39171 + (TG)n Simple_repeat Simple_repeat 2 23 0 963 239 52 45 chrY 24673919 24674187 -38892 - AluJo SINE Alu -42 270 1 1351 209 45 33 chrY 24674653 24675205 -37874 - L1MD2 LINE L1 -10 6349 5752 376 240 195 39 chrY 24675370 24675524 -37555 - L1ME3A LINE L1 -8 6162 5985 500 78 0 0 chrY 24675528 24675592 -37487 - AluS SINE Alu -248 65 2 947 173 7 0 chrY 24675611 24675761 -37318 - AluJb SINE Alu -26 286 136 1116 256 97 33 chrY 24675781 24676047 -37032 - L1ME3A LINE L1 -183 5987 5739 333 0 0 0 chrY 24676047 24676084 -36995 + (TTTC)n Simple_repeat Simple_repeat 1 37 0 2159 105 14 3 chrY 24676084 24676555 -36524 - AluSq SINE Alu 0 474 1 1116 256 97 33 chrY 24676555 24676740 -36339 - L1ME3A LINE L1 -430 5740 5505 2406 92 3 21 chrY 24676742 24677080 -35999 - MER41A LTR ERV1 0 554 223 391 331 7 26 chrY 24677315 24677584 -35495 - L1M3c LINE L1 -4528 1856 1593 325 353 29 0 chrY 24677600 24677739 -35340 - L1M4 LINE L1 -5042 1342 1200 326 263 109 7 chrY 24677793 24677930 -35149 - L1M3c LINE L1 -4820 1493 1343 22348 51 3 3 chrY 24679354 24682945 -30134 - L1PA4 LINE L1 -2 6153 2558 1158 104 3 7 chrY 24682953 24697465 -15614 + BSR/Beta Satellite Satellite 1 14458 -3 267 207 0 17 chrY 24697449 24697507 -15572 + AluJ/FRAM SINE Alu 232 288 -14 * 491 168 18 0 chrY 24697507 24697620 -15459 + (GAATG)n Simple_repeat Simple_repeat 2 116 0 379 156 31 0 chrY 24697620 24697684 -15395 + AluS SINE Alu 223 288 -12 846 167 0 0 chrY 24697690 24697870 -15209 + (GAATG)n Simple_repeat Simple_repeat 1 180 0 365 191 29 0 chrY 24697882 24697950 -15129 + AluS SINE Alu 223 292 -8 774 203 3 0 chrY 24697950 24698296 -14783 + (GAATG)n Satellite Satellite 1 347 0 331 179 0 0 chrY 24698338 24698394 -14685 + AluJ/FRAM SINE Alu 225 280 -22 672 150 0 0 chrY 24698397 24698524 -14555 + (GAATG)n Simple_repeat Simple_repeat 5 131 0 307 200 0 0 chrY 24698535 24698590 -14489 + AluJ/FRAM SINE Alu 225 279 -23 910 138 0 11 chrY 24698600 24698781 -14298 + (GAGTG)n Simple_repeat Simple_repeat 2 180 0 306 87 0 0 chrY 24698782 24698828 -14251 + (GAATG)n Simple_repeat Simple_repeat 5 50 0 582 146 0 0 chrY 24698866 24698976 -14103 + (GAATG)n Simple_repeat Simple_repeat 1 110 0 374 191 29 0 chrY 24698988 24699056 -14023 + AluJ/FRAM SINE Alu 225 294 -8 816 173 0 0 chrY 24699073 24699252 -13827 + (GAATG)n Simple_repeat Simple_repeat 2 180 0 316 235 29 0 chrY 24699270 24699338 -13741 + AluJ/FRAM SINE Alu 225 294 -8 226 135 0 0 chrY 24699338 24699375 -13704 + (GAATG)n Simple_repeat Simple_repeat 1 37 0 915 161 0 0 chrY 24699380 24699560 -13519 + (GAGTG)n Simple_repeat Simple_repeat 1 180 0 253 173 0 25 chrY 24699589 24699670 -13409 + (GAATG)n Simple_repeat Simple_repeat 3 81 0 328 206 29 0 chrY 24699684 24699752 -13327 + AluS SINE Alu 224 293 -8 495 118 0 0 chrY 24699753 24699838 -13241 + (GAATG)n Simple_repeat Simple_repeat 2 86 0 378 193 55 6 chrY 24699838 24699939 -13140 + AluJ/FRAM SINE Alu 225 294 -8 1149 101 0 0 chrY 24699939 24699997 -13082 + (GAATG)n Satellite Satellite 1 237 0 1149 101 0 0 chrY 24699997 24700176 -12903 + (GAATG)n Satellite Satellite 1 179 0 1005 134 0 0 chrY 24700190 24700362 -12717 + (GAATG)n Satellite Satellite 5 176 0 272 238 16 0 chrY 24700373 24700436 -12643 + AluJ/FRAM SINE Alu 225 288 -14 294 169 0 0 chrY 24700436 24700501 -12578 + (GAGTG)n Simple_repeat Simple_repeat 2 66 0 336 213 39 12 chrY 24700501 24700609 -12470 + AluJ/FRAM SINE Alu 225 286 -16 891 135 0 0 chrY 24700609 24700765 -12314 + (GAATG)n Simple_repeat Simple_repeat 5 160 0 375 206 27 0 chrY 24700776 24700849 -12230 + AluS SINE Alu 224 298 -3 222 94 0 0 chrY 24700849 24700881 -12198 + (GAATG)n Simple_repeat Simple_repeat 1 32 0 882 167 0 0 chrY 24700881 24701061 -12018 + (GAGTG)n Simple_repeat Simple_repeat 1 180 0 434 177 18 0 chrY 24701040 24701153 -11926 + (GAATG)n Simple_repeat Simple_repeat 2 116 0 * 302 218 0 0 chrY 24701153 24701208 -11871 + AluJ/FRAM SINE Alu 225 279 -23 1035 139 0 0 chrY 24701217 24701223 -11856 + (GAGTG)n Simple_repeat Simple_repeat 1 186 0 1035 139 0 0 chrY 24701223 24701403 -11676 + (GAGTG)n Simple_repeat Simple_repeat 1 180 0 324 200 0 0 chrY 24701550 24701605 -11474 + AluJ/FRAM SINE Alu 225 279 -23 1056 119 0 0 chrY 24701610 24701645 -11434 + (GAGTG)n Simple_repeat Simple_repeat 1 212 0 1056 119 0 0 chrY 24701645 24701822 -11257 + (GAGTG)n Simple_repeat Simple_repeat 4 180 0 260 250 16 0 chrY 24701947 24702011 -11068 + AluS SINE Alu 225 289 -13 569 154 16 0 chrY 24702011 24702134 -10945 + (GAATG)n Simple_repeat Simple_repeat 2 126 0 407 125 31 0 chrY 24702134 24702198 -10881 + AluJ/FRAM SINE Alu 225 290 -22 774 89 0 0 chrY 24702198 24702310 -10769 + (GAATG)n Simple_repeat Simple_repeat 5 116 0 354 206 29 0 chrY 24702321 24702389 -10690 + AluS SINE Alu 223 292 -8 201 132 0 0 chrY 24702392 24702430 -10649 + (TAATG)n Simple_repeat Simple_repeat 2 39 0 924 149 0 0 chrY 24702449 24702623 -10456 + (GAGTG)n Simple_repeat Simple_repeat 4 177 0 360 216 0 0 chrY 24702634 24702731 -10348 + (GAGTG)n Simple_repeat Simple_repeat 1 97 0 180 135 0 0 chrY 24702732 24702769 -10310 + (GAATG)n Simple_repeat Simple_repeat 3 39 0 306 100 0 0 chrY 24702784 24702824 -10255 + Alu SINE Alu 224 263 -37 687 175 0 0 chrY 24702850 24703004 -10075 + (GAATG)n Simple_repeat Simple_repeat 5 158 0 337 153 0 0 chrY 24703015 24703068 -10011 + AluS SINE Alu 224 270 -31 731 131 7 0 chrY 24703069 24703206 -9873 + (GAATG)n Simple_repeat Simple_repeat 5 142 0 234 242 32 0 chrY 24703217 24703279 -9800 + AluJ/FRAM SINE Alu 225 288 -14 468 179 0 0 chrY 24703279 24703391 -9688 + (GAATG)n Simple_repeat Simple_repeat 5 116 0 397 174 29 0 chrY 24703401 24703470 -9609 + AluJ/FRAM SINE Alu 224 294 -8 804 168 0 0 chrY 24703470 24703643 -9436 + (GAATG)n Simple_repeat Simple_repeat 5 177 0 336 233 27 0 chrY 24703654 24703727 -9352 + AluS SINE Alu 223 297 -3 996 151 0 0 chrY 24703735 24703914 -9165 + (GAGTG)n Simple_repeat Simple_repeat 1 179 0 543 184 0 0 chrY 24703927 24704063 -9016 + (GAATG)n Simple_repeat Simple_repeat 2 137 0 363 223 29 6 chrY 24704063 24704164 -8915 + AluJ/FRAM SINE Alu 225 292 -10 1053 141 4 6 chrY 24704164 24704467 -8612 + (GAATG)n Satellite Satellite 1 484 -16 993 145 0 0 chrY 24704467 24704646 -8433 + (GAGTG)n Simple_repeat Simple_repeat 1 179 0 1053 141 4 6 chrY 24704646 24704663 -8416 + (GAATG)n Satellite Satellite 484 500 0 268 250 15 0 chrY 24704663 24704731 -8348 + AluS SINE Alu 225 293 -9 831 183 0 0 chrY 24704758 24704938 -8141 + (GAGTG)n Simple_repeat Simple_repeat 1 180 0 1062 135 0 3 chrY 24704958 24705511 -7568 + (GAATG)n Satellite Satellite 1 726 0 996 114 0 0 chrY 24705511 24705687 -7392 + (GAATG)n Satellite Satellite 4 179 0 744 149 0 0 chrY 24705965 24706139 -6940 + (GAATG)n Satellite Satellite 2 175 0 1053 122 0 5 chrY 24706170 24706641 -6438 + (GAATG)n Satellite Satellite 1 646 0 1011 112 0 0 chrY 24706641 24706820 -6259 + (GAATG)n Satellite Satellite 1 179 0 716 172 0 3 chrY 24706938 24707296 -5783 + (GAATG)n Satellite Satellite 1 356 0 747 144 0 0 chrY 24707312 24707479 -5600 + (GAATG)n Satellite Satellite 4 170 0 906 122 0 0 chrY 24707512 24707692 -5387 + (GAATG)n Satellite Satellite 1 180 0 1023 125 2 15 chrY 24707712 24708341 -4738 + (GAATG)n Satellite Satellite 1 620 0 962 131 0 8 chrY 24708366 24708731 -4348 + (GAATG)n Satellite Satellite 1 361 0 303 160 0 0 chrY 24708747 24708822 -4257 + (GAATG)n Satellite Satellite 3 77 0 222 37 0 0 chrY 24708824 24708851 -4228 + (TA)n Simple_repeat Simple_repeat 1 27 0 2950 92 11 0 chrY 24708865 24709331 -3748 - L1P3 LINE L1 -503 5651 5182 * 7205 102 20 1 chrY 24709316 24710367 -2712 + L1P3 LINE L1 4103 5173 -973 24 0 0 0 chrY 24710544 24710568 -2511 + AT_rich Low_complexity Low_complexity 1 24 0 294 106 0 0 chrY 24711256 24711303 -1776 + (TG)n Simple_repeat Simple_repeat 2 48 0 284 109 0 18 chrY 24712472 24712527 -552 + (TA)n Simple_repeat Simple_repeat 2 55 0