671 112 9 19 chrX 1 108 -176974032 + MLT1A1 LTR MaLR 260 365 0 1400 147 4 0 chrX 108 339 -176973801 + MLT1B LTR MaLR 158 389 -1 551 211 265 0 chrX 340 525 -176973615 + L1MB4 LINE L1 5906 6139 -41 1872 146 0 23 chrX 530 831 -176973309 - AluJo SINE Alu -15 297 4 3752 130 0 8 chrX 1434 1963 -176972177 + MER1A DNA MER1_type 3 527 0 1909 174 3 0 chrX 2120 2408 -176971732 + AluJb SINE Alu 2 290 -22 2210 121 3 0 chrX 2445 2742 -176971398 + AluSq SINE Alu 1 298 -15 905 115 0 8 chrX 2742 2872 -176971268 + AluSg/x SINE Alu 158 286 -24 258 32 0 0 chrX 2908 2939 -176971201 + (TG)n Simple_repeat Simple_repeat 1 31 0 903 136 34 20 chrX 2940 3087 -176971053 - AluSq/x SINE Alu -164 149 1 204 40 0 0 chrX 3186 3211 -176970929 + (T)n Simple_repeat Simple_repeat 1 25 0 2531 63 0 0 chrX 3236 3535 -176970605 - AluY SINE Alu -12 299 1 189 0 0 0 chrX 3566 3587 -176970553 + (A)n Simple_repeat Simple_repeat 1 21 0 2171 105 3 7 chrX 4038 4355 -176969785 - AluSx SINE Alu 0 316 1 783 126 0 77 chrX 4594 4737 -176969403 - FLAM_C SINE Alu -1 132 1 21 57 0 0 chrX 4743 4778 -176969362 + AT_rich Low_complexity Low_complexity 1 35 0 1505 128 8 16 chrX 4794 5044 -176969096 - L1MC1 LINE L1 0 6333 6086 235 281 45 0 chrX 5072 5161 -176968979 + L1MEc LINE L1 1262 1354 -5042 2142 144 0 0 chrX 5521 5827 -176968313 + AluSx SINE Alu 1 306 -6 22 0 0 0 chrX 5899 5921 -176968219 + AT_rich Low_complexity Low_complexity 1 22 0 2358 112 49 0 chrX 6146 6198 -176967942 - THE1B LTR MaLR 0 364 316 2366 70 0 7 chrX 6198 6485 -176967655 - AluY SINE Alu -11 300 16 2358 112 49 0 chrX 6485 6779 -176967361 - THE1B LTR MaLR -48 316 1 402 336 24 24 chrX 6986 7236 -176966904 + L1MEc LINE L1 2302 2551 -3664 885 150 0 0 chrX 7243 7376 -176966764 + FLAM_C SINE Alu 1 133 0 2042 133 20 3 chrX 7735 8036 -176966104 - AluSx SINE Alu -6 306 1 369 0 0 0 chrX 8784 8825 -176965315 + (TG)n Simple_repeat Simple_repeat 2 42 0 195 42 0 0 chrX 9307 9331 -176964809 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 3532 65 5 0 chrX 9383 9828 -176964312 + L1PA10 LINE L1 5718 6164 -4 2003 134 35 15 chrX 9993 10336 -176963804 + L1PB4 LINE L1 5804 6153 -3 188 61 61 0 chrX 10580 10613 -176963527 + T-rich Low_complexity Low_complexity 2 36 0 1827 169 0 19 chrX 10870 11288 -176962852 + AluJb SINE Alu 1 412 0 367 73 36 0 chrX 11341 11396 -176962744 - Alu SINE Alu -5 297 241 319 193 23 11 chrX 11402 11490 -176962650 + CT-rich Low_complexity Low_complexity 4 92 0 1771 181 0 7 chrX 11493 11797 -176962343 - AluJb SINE Alu -10 302 1 2209 173 18 3 chrX 11858 12240 -176961900 + MLT1B LTR MaLR 3 390 0 1346 167 116 29 chrX 12321 12555 -176961585 - AluJo SINE Alu -13 299 36 5044 94 0 0 chrX 12555 13215 -176960925 + PABL_A LTR ERV1 1 660 0 1346 167 116 29 chrX 13215 13255 -176960885 - AluJo SINE Alu -276 36 1 247 264 16 48 chrX 13555 13680 -176960460 + L1ME LINE L1 5691 5811 -359 785 153 0 0 chrX 14088 14206 -176959934 + FLAM_C SINE Alu 1 118 -15 1156 203 14 22 chrX 14229 14451 -176959689 + AluJo SINE Alu 1 220 -92 290 118 0 39 chrX 14451 14502 -176959638 + AluSg/x SINE Alu 84 132 -168 32 26 0 0 chrX 14502 14541 -176959599 + AT_rich Low_complexity Low_complexity 1 39 0 978 137 27 0 chrX 14551 14734 -176959406 + L1MA4 LINE L1 6107 6294 -6 2113 117 0 0 chrX 14752 15034 -176959106 - AluSx SINE Alu -30 282 1 23 0 0 0 chrX 15041 15064 -176959076 + AT_rich Low_complexity Low_complexity 1 23 0 558 229 12 59 chrX 15967 16137 -176958003 - MER20 DNA MER1_type -42 177 16 1702 174 35 0 chrX 16209 16331 -176957809 + AluJo SINE Alu 1 117 -195 186 43 0 0 chrX 16331 16354 -176957786 + (TAAAA)n Simple_repeat Simple_repeat 3 25 0 1702 174 35 0 chrX 16354 16518 -176957622 + AluJo SINE Alu 117 297 -15 28 29 0 0 chrX 16684 16719 -176957421 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chrX 17065 17093 -176957047 + AT_rich Low_complexity Low_complexity 1 28 0 349 246 118 43 chrX 17477 17664 -176956476 + L1ME1 LINE L1 5736 5936 -230 2486 85 0 3 chrX 18418 18725 -176955415 - AluSg SINE Alu -4 306 1 2361 95 3 0 chrX 18957 19262 -176954878 - AluSp SINE Alu -7 306 1 616 155 35 113 chrX 19495 19637 -176954503 + FLAM_C SINE Alu 2 132 -11 5024 109 7 0 chrX 19661 20376 -176953764 + L1PA11 LINE L1 5445 6164 -10 2057 135 0 22 chrX 20379 20665 -176953475 + AluSx SINE Alu 1 281 -31 189 0 0 0 chrX 20665 20686 -176953454 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 2057 135 0 22 chrX 20686 20718 -176953422 + AluSx SINE Alu 281 312 0 2727 28 9 0 chrX 20785 21104 -176953036 + L1PA4 LINE L1 5831 6152 -3 24 53 0 0 chrX 21104 21142 -176952998 + AT_rich Low_complexity Low_complexity 1 38 0 1958 141 3 13 chrX 21577 21876 -176952264 + AluSq SINE Alu 18 313 0 257 75 25 0 chrX 21909 21949 -176952191 + (GAA)n Simple_repeat Simple_repeat 2 42 0 262 228 0 0 chrX 21966 22023 -176952117 - MIR SINE MIR -146 116 60 1351 190 52 14 chrX 22128 22261 -176951879 + AluJo SINE Alu 3 129 -183 2160 110 14 0 chrX 22261 22551 -176951589 + AluSx SINE Alu 1 294 -18 1351 190 52 14 chrX 22551 22706 -176951434 + AluJo SINE Alu 129 302 -10 445 172 16 0 chrX 22790 22912 -176951228 + (TCTA)n Simple_repeat Simple_repeat 2 125 0 256 100 0 40 chrX 22916 22966 -176951174 + MLT2B1 LTR ERVL 458 505 -15 581 208 32 19 chrX 22999 23153 -176950987 + L1M4 LINE L1 5071 5226 -920 550 195 140 30 chrX 23716 23880 -176950260 + MLT1C LTR MaLR 1 182 -285 546 242 73 28 chrX 23926 24104 -176950036 + MLT1C LTR MaLR 172 357 -110 1846 150 10 30 chrX 24125 24425 -176949715 + AluJb SINE Alu 1 294 -18 768 170 0 7 chrX 24524 24659 -176949481 + FRAM SINE Alu 42 175 -1 310 339 0 17 chrX 24772 24887 -176949253 - MER5A DNA MER1_type 0 189 77 813 181 0 8 chrX 24939 25072 -176949068 - FLAM_C SINE Alu -1 132 1 272 253 0 44 chrX 25190 25281 -176948859 - L1MC4 LINE L1 -13 8029 7943 2197 138 43 0 chrX 25353 25702 -176948438 - THE1B LTR MaLR 0 364 1 10878 107 36 1 chrX 25702 27228 -176946912 - THE1B-int LTR MaLR 0 1580 1 2352 133 23 0 chrX 27228 27582 -176946558 - THE1B LTR MaLR 0 364 3 882 153 0 14 chrX 27656 27800 -176946340 + FLAM_C SINE Alu 1 142 -1 493 227 169 7 chrX 27808 27962 -176946178 - L1MC4 LINE L1 -285 7757 7579 286 164 30 0 chrX 27971 28038 -176946102 - L1MB4 LINE L1 0 6180 6112 336 200 0 0 chrX 28114 28174 -176945966 - L1MB4 LINE L1 -55 6125 6066 1233 141 0 0 chrX 28183 28360 -176945780 + AluSg/x SINE Alu 136 312 0 1153 253 88 40 chrX 28413 28935 -176945205 + L1ME1 LINE L1 4767 5313 -833 1941 141 0 3 chrX 28936 29262 -176944878 - AluSx SINE Alu 0 325 1 2108 134 0 10 chrX 29270 29575 -176944565 + AluSx SINE Alu 1 302 -10 1788 239 34 60 chrX 29575 29925 -176944215 + L1ME1 LINE L1 5595 5953 -381 1976 107 61 151 chrX 29925 30139 -176944001 - Tigger2a DNA MER2_type -2274 434 285 2005 154 13 0 chrX 30139 30445 -176943695 + AluJo SINE Alu 1 310 -2 1976 107 61 151 chrX 30445 30707 -176943433 - Tigger2a DNA MER2_type -2423 285 1 1788 239 34 60 chrX 30707 30958 -176943182 + L1ME1 LINE L1 5953 6334 0 572 184 14 40 chrX 31077 31434 -176942706 + (TATATG)n Simple_repeat Simple_repeat 1 347 0 477 216 3 55 chrX 31458 31730 -176942410 + (TATATG)n Simple_repeat Simple_repeat 1 375 -39 722 198 0 0 chrX 31730 31856 -176942284 + FLAM_C SINE Alu 1 126 -7 477 216 3 55 chrX 31856 31895 -176942245 + (TATATG)n Simple_repeat Simple_repeat 375 414 0 234 121 35 35 chrX 31899 31957 -176942183 + L1MCa LINE L1 2006 2063 -4363 520 208 4 28 chrX 31957 32203 -176941937 + (TATATG)n Simple_repeat Simple_repeat 1 240 0 220 295 16 0 chrX 32206 32267 -176941873 + (TATG)n Simple_repeat Simple_repeat 1 62 0 496 240 6 6 chrX 32268 32443 -176941697 + (TATATG)n Simple_repeat Simple_repeat 3 177 0 1765 161 11 0 chrX 32758 33044 -176941096 - AluJo SINE Alu 0 312 24 1015 262 62 54 chrX 33413 33909 -176940231 + LTR1B LTR ERV1 25 524 -302 602 188 14 76 chrX 34014 34158 -176939982 + HUERS-P2 LTR ERV1 2 136 -2952 * 2836 207 37 40 chrX 34129 34728 -176939412 + HUERS-P2 LTR ERV1 616 1212 -1876 1718 196 10 3 chrX 34722 35023 -176939117 + HUERS-P2 LTR ERV1 1079 1381 -1707 * 2445 188 53 9 chrX 35022 35571 -176938569 + HUERS-P2 LTR ERV1 2467 3074 -14 973 229 113 91 chrX 35572 36136 -176938004 + LTR1B LTR ERV1 10 589 -237 977 191 0 0 chrX 36233 36390 -176937750 - AluJb SINE Alu -20 292 136 893 179 14 82 chrX 36390 36709 -176937431 - L1MA4 LINE L1 -27 6273 6011 23 0 0 0 chrX 36862 36885 -176937255 + AT_rich Low_complexity Low_complexity 1 23 0 743 149 9 0 chrX 36885 36999 -176937141 - FLAM_C SINE Alu -24 119 5 407 207 73 29 chrX 37452 37535 -176936605 + LTR8 LTR ERV1 1 74 -467 219 36 0 0 chrX 37535 37563 -176936577 + (TTG)n Simple_repeat Simple_repeat 3 30 0 407 207 73 29 chrX 37563 37639 -176936501 + LTR8 LTR ERV1 74 145 -396 1687 189 7 0 chrX 37755 38056 -176936084 + AluJo SINE Alu 5 307 -5 872 194 20 30 chrX 38289 38490 -176935650 + MER20 DNA MER1_type 1 199 -20 746 128 0 115 chrX 40134 40342 -176933798 - FLAM_C SINE Alu 0 191 1 264 234 26 13 chrX 40693 40770 -176933370 + (TA)n Simple_repeat Simple_repeat 2 79 0 358 259 29 3 chrX 40803 41159 -176932981 + (TA)n Simple_repeat Simple_repeat 1 365 0 267 189 54 34 chrX 41119 41167 -176932973 + (TTATA)n Simple_repeat Simple_repeat 1 47 -104 * 872 150 0 0 chrX 41167 41300 -176932840 - FLAM_C SINE Alu 0 133 1 267 189 54 34 chrX 41300 41399 -176932741 + (TTATA)n Simple_repeat Simple_repeat 47 151 0 262 219 14 41 chrX 41730 41803 -176932337 - MER116 DNA Mariner -2 78 8 2319 99 0 0 chrX 41882 42175 -176931965 - AluSx SINE Alu -19 293 1 180 158 0 0 chrX 42220 42258 -176931882 + T-rich Low_complexity Low_complexity 1 38 0 2008 143 0 0 chrX 42259 42575 -176931565 - AluSx SINE Alu 0 316 1 1597 179 66 0 chrX 42698 42971 -176931169 - AluJo SINE Alu -21 291 1 770 157 8 8 chrX 42971 43105 -176931035 - AluJo SINE Alu -176 136 3 821 136 0 0 chrX 43186 43304 -176930836 + AluJb SINE Alu 10 127 -185 2118 124 6 16 chrX 43950 44265 -176929875 + AluJo SINE Alu 1 312 0 254 93 23 0 chrX 44545 44588 -176929552 + MADE1 DNA Mariner 1 44 -36 621 146 9 125 chrX 44770 44982 -176929158 - MER4A LTR ERV1 -158 506 261 508 165 21 10 chrX 44982 45079 -176929061 - MER4A LTR ERV1 -566 98 1 2213 105 3 7 chrX 45481 45786 -176928354 - MER4E LTR ERV1 0 766 463 1047 57 0 29 chrX 45789 45929 -176928211 + AluSg/x SINE Alu 175 310 0 2960 127 31 27 chrX 45931 46420 -176927720 - MER4E LTR ERV1 -288 491 1 500 129 0 12 chrX 46771 46856 -176927284 - AluJ/FLAM SINE Alu -227 85 2 2905 13 0 0 chrX 47451 47806 -176926334 - AluY SINE Alu 0 355 1 740 191 0 22 chrX 47884 48020 -176926120 - FLAM_C SINE Alu 0 133 1 1668 174 37 7 chrX 48786 49085 -176925055 - AluJb SINE Alu 0 312 5 1875 185 0 6 chrX 49742 50056 -176924084 - AluJb SINE Alu 0 312 1 2273 123 0 0 chrX 50059 50367 -176923773 - AluSx SINE Alu -4 308 1 1429 143 31 109 chrX 50443 50561 -176923579 + AluJo SINE Alu 18 144 -168 2458 75 0 0 chrX 50561 50853 -176923287 - AluY SINE Alu -18 293 2 1429 143 31 109 chrX 50853 51027 -176923113 + AluJo SINE Alu 144 287 -25 2295 91 0 10 chrX 51030 51337 -176922803 + AluSx SINE Alu 1 304 -8 1849 154 0 36 chrX 51745 52051 -176922089 - AluJo SINE Alu -17 295 1 720 136 0 64 chrX 52455 52595 -176921545 - FLAM_C SINE Alu 0 133 3 2427 181 13 63 chrX 52600 53151 -176920989 + MER74A LTR ERVL 23 545 -13 2240 106 0 0 chrX 53198 53505 -176920635 + AluSx SINE Alu 1 307 0 650 240 6 11 chrX 53552 53727 -176920413 + MER5B DNA MER1_type 1 174 -4 1840 167 0 20 chrX 53775 54074 -176920066 + AluJo SINE Alu 4 296 -16 998 210 0 0 chrX 54074 54250 -176919890 + AluJb SINE Alu 134 309 -3 900 137 0 8 chrX 54840 54971 -176919169 + FLAM_C SINE Alu 4 133 -10 24 0 0 0 chrX 54971 54995 -176919145 + AT_rich Low_complexity Low_complexity 1 24 0 841 164 7 7 chrX 55172 55324 -176918816 + MLT1A1 LTR MaLR 1 152 -213 949 111 0 15 chrX 55327 55462 -176918678 + FLAM_C SINE Alu 1 133 0 29 94 0 0 chrX 55834 55919 -176918221 + AT_rich Low_complexity Low_complexity 1 85 0 1683 161 0 81 chrX 55978 56300 -176917840 - AluJb SINE Alu -16 296 1 837 230 148 19 chrX 56625 56943 -176917197 + MLT1D LTR MaLR 1 359 -146 969 160 10 35 chrX 56946 57008 -176917132 - MLT1B LTR MaLR -195 195 133 2553 104 28 6 chrX 57008 57364 -176916776 - THE1B LTR MaLR 0 364 1 969 160 10 35 chrX 57364 57501 -176916639 - MLT1B LTR MaLR -257 133 1 * 988 266 76 6 chrX 57501 57854 -176916286 + MLT1C LTR MaLR 88 465 -2 2025 130 0 27 chrX 58563 58864 -176915276 + AluSx SINE Alu 1 293 -19 1513 181 46 11 chrX 59003 59284 -176914856 + AluJo SINE Alu 1 291 -21 2105 144 7 0 chrX 59654 59953 -176914187 - AluSx SINE Alu -11 301 1 930 119 0 22 chrX 60044 60178 -176913962 - FLAM_C SINE Alu -2 131 1 1720 183 0 3 chrX 60585 60892 -176913248 - AluJo SINE Alu 0 306 1 1106 141 0 0 chrX 60954 61117 -176913023 + AluSg/x SINE Alu 131 293 -19 1905 133 0 73 chrX 61141 61471 -176912669 + AluJb SINE Alu 6 311 -1 241 167 42 0 chrX 62102 62150 -176911990 + MLT1D LTR MaLR 1 50 -455 327 83 42 0 chrX 62151 62199 -176911941 + MLT1D LTR MaLR 1 50 -455 303 125 42 0 chrX 62200 62248 -176911892 + MLT1D LTR MaLR 1 50 -455 335 303 80 42 chrX 62356 62620 -176911520 + L2 LINE L2 2703 2976 -338 579 159 0 37 chrX 62731 62894 -176911246 + CT-rich Low_complexity Low_complexity 3 159 0 222 314 35 23 chrX 62948 63034 -176911106 + L2 LINE L2 3137 3223 -49 2511 81 0 0 chrX 63310 63620 -176910520 - AluSg SINE Alu 0 310 1 1674 174 14 0 chrX 63620 63896 -176910244 - AluJo SINE Alu -32 280 1 2368 115 0 0 chrX 64022 64334 -176909806 - AluSx SINE Alu 0 312 1 3967 105 86 21 chrX 64893 65202 -176908938 - PABL_A LTR ERV1 0 660 372 2284 107 0 0 chrX 65202 65528 -176908612 + AluSx SINE Alu 1 326 0 3967 105 86 21 chrX 65528 65836 -176908304 - PABL_A LTR ERV1 -288 372 2 270 189 0 0 chrX 65842 65895 -176908245 - L1MB7 LINE L1 -61 6123 6071 2773 121 23 35 chrX 65895 66239 -176907901 - MER4E LTR ERV1 0 766 419 2523 94 0 0 chrX 66239 66546 -176907594 + AluSx SINE Alu 1 307 -5 2773 121 23 35 chrX 66546 66807 -176907333 - MER4E LTR ERV1 -347 419 1 1791 157 10 13 chrX 66830 67135 -176907005 - AluJb SINE Alu 0 312 9 343 143 39 0 chrX 67143 67220 -176906920 - L1MB7 LINE L1 -109 6075 5996 921 143 0 29 chrX 67268 67408 -176906732 - AluJo SINE Alu -176 136 1 598 212 97 0 chrX 67415 67580 -176906560 - L1MB7 LINE L1 -218 5966 5786 2420 99 10 0 chrX 67626 67929 -176906211 + AluSx SINE Alu 1 306 -6 392 265 5 134 chrX 67975 68364 -176905776 - HsTC2 DNA Tc2 -21 1877 1539 * 956 294 73 12 chrX 68361 68769 -176905371 - MLT1C LTR MaLR -30 437 5 813 233 149 19 chrX 68784 69093 -176905047 - MLT1D LTR MaLR -145 360 12 329 217 13 16 chrX 69115 69254 -176904886 - MLT1C LTR MaLR -145 360 192 180 163 0 0 chrX 69394 69437 -176904703 + GA-rich Low_complexity Low_complexity 2 44 0 4099 77 16 12 chrX 69802 70375 -176903765 - PABL_B LTR ERV1 0 667 93 2439 94 0 0 chrX 70375 70682 -176903458 - AluSx SINE Alu -5 307 1 253 286 0 0 chrX 71375 71431 -176902709 + (CA)n Simple_repeat Simple_repeat 1 56 0 1820 104 101 17 chrX 71455 71742 -176902398 - AluSx SINE Alu -1 311 1 720 153 65 32 chrX 71747 71871 -176902269 - FLAM_C SINE Alu -14 129 2 1073 82 109 0 chrX 71964 72111 -176902029 + AluSg/x SINE Alu 149 311 -1 1564 239 28 0 chrX 72135 72528 -176901612 - L1MB5 LINE L1 -49 6125 5722 1545 161 24 31 chrX 73041 73332 -176900808 + AluJb SINE Alu 24 312 0 1970 129 6 55 chrX 73436 73762 -176900378 + AluSx SINE Alu 1 310 -2 959 226 26 44 chrX 74205 74405 -176899735 - MLT1B LTR MaLR -15 375 180 2270 113 7 3 chrX 74405 74715 -176899425 - AluSx SINE Alu -1 311 1 959 226 26 44 chrX 74715 74784 -176899356 - MLT1B LTR MaLR -210 180 111 1325 188 82 41 chrX 75092 75384 -176898756 + AluJo SINE Alu 1 304 -8 263 200 0 43 chrX 75385 75455 -176898685 + GA-rich Low_complexity Low_complexity 1 67 0 1739 164 13 20 chrX 76056 76354 -176897786 - AluJo SINE Alu -13 299 4 928 190 15 41 chrX 76848 77043 -176897097 + AluJo SINE Alu 1 190 -122 1338 82 0 22 chrX 77588 77793 -176896347 + AluSg/x SINE Alu 118 310 0 2393 99 0 3 chrX 77968 78281 -176895859 - AluSx SINE Alu 0 312 1 21 57 0 0 chrX 78525 78560 -176895580 + GC_rich Low_complexity Low_complexity 1 35 0 244 252 0 66 chrX 78760 78896 -176895244 + GA-rich Low_complexity Low_complexity 3 211 0 233 211 18 0 chrX 78989 79046 -176895094 + (CCCCG)n Simple_repeat Simple_repeat 2 59 0 2887 141 90 52 chrX 79695 80202 -176893938 - MER51A LTR ERV1 -9 625 90 1729 115 20 112 chrX 80202 80551 -176893589 + AluYb8 SINE Alu 2 318 0 2887 141 90 52 chrX 80551 80645 -176893495 - MER51A LTR ERV1 -544 90 1 422 202 53 0 chrX 80914 81008 -176893132 + AluSg/x SINE Alu 208 306 -3 632 200 40 23 chrX 81008 81211 -176892929 - LTR54B LTR ERV1 -181 329 52 5014 91 3 3 chrX 81211 81871 -176892269 + PABL_A LTR ERV1 1 660 0 632 200 40 23 chrX 81871 81912 -176892228 - LTR54B LTR ERV1 -458 52 13 923 237 88 9 chrX 82359 82676 -176891464 - MLT1C LTR MaLR -32 435 94 912 187 44 6 chrX 82684 82866 -176891274 + MLT1B LTR MaLR 1 189 -201 634 265 95 30 chrX 82848 83193 -176890947 - MLT1C LTR MaLR -98 369 1 * 1955 140 0 3 chrX 83460 83746 -176890394 + AluJb SINE Alu 1 285 -27 597 230 13 13 chrX 83813 83965 -176890175 - L1MB8 LINE L1 -22 6156 6005 1857 158 10 49 chrX 83975 84302 -176889838 + MLT1B LTR MaLR 12 323 -67 2081 130 37 0 chrX 84302 84602 -176889538 - AluJb SINE Alu -1 311 1 1857 158 10 49 chrX 84602 84661 -176889479 + MLT1B LTR MaLR 323 383 -7 592 223 1 7 chrX 84666 84805 -176889335 - L1MB7 LINE L1 -192 5992 5876 2352 97 0 25 chrX 84884 85241 -176888899 - AluSx SINE Alu 0 349 1 1083 211 78 14 chrX 85248 85532 -176888608 + LTR52 LTR ERVL 23 324 -97 180 0 0 0 chrX 85537 85557 -176888583 + (TG)n Simple_repeat Simple_repeat 1 20 0 * 216 0 0 0 chrX 85556 85580 -176888560 + (GA)n Simple_repeat Simple_repeat 1 24 0 290 177 16 16 chrX 86091 86153 -176887987 - MER4D LTR ERV1 -8 895 834 332 97 58 19 chrX 86211 86314 -176887826 + (TAGA)n Simple_repeat Simple_repeat 4 110 0 358 132 54 38 chrX 86359 86620 -176887520 + (TAGA)n Simple_repeat Simple_repeat 1 265 0 563 219 17 62 chrX 86646 86824 -176887316 - MER20 DNA MER1_type -2 217 48 264 77 0 0 chrX 86854 86893 -176887247 + (TAGG)n Simple_repeat Simple_repeat 1 39 0 200 140 70 0 chrX 86902 86959 -176887181 + (TAGA)n Simple_repeat Simple_repeat 3 63 0 1334 95 0 0 chrX 87259 87427 -176886713 + AluSg/x SINE Alu 137 304 -8 2290 230 48 11 chrX 87752 88291 -176885849 - MER68 LTR ERV1 -2 560 2 2015 137 0 10 chrX 88648 88941 -176885199 - AluSx SINE Alu -1 311 22 2388 53 40 7 chrX 89024 89325 -176884815 - AluY SINE Alu 0 311 1 1679 192 10 0 chrX 90023 90320 -176883820 + AluJo SINE Alu 1 300 -12 1882 157 124 122 chrX 90529 90542 -176883598 - L1MA4A LINE L1 -6 6297 6286 1218 186 103 73 chrX 90542 90843 -176883297 - AluJo SINE Alu -2 310 1 1882 157 124 122 chrX 90843 91288 -176882852 - L1MA4A LINE L1 -17 6286 5843 1765 158 3 27 chrX 91288 91586 -176882554 - AluSx SINE Alu -21 291 1 1882 157 124 122 chrX 91586 91638 -176882502 - L1MA4A LINE L1 -460 5843 5793 2195 128 0 0 chrX 91638 91944 -176882196 - AluJb SINE Alu -6 306 1 1882 157 124 122 chrX 91944 92062 -176882078 - L1MA4A LINE L1 -510 5793 5666 2278 108 0 0 chrX 92347 92642 -176881498 + AluSx SINE Alu 9 303 -9 1608 176 8 0 chrX 92646 92901 -176881239 + AluJb SINE Alu 26 282 -30 1835 148 13 44 chrX 93258 93576 -176880564 + AluJo SINE Alu 5 312 0 2340 133 75 8 chrX 93658 94057 -176880083 - MSTA LTR MaLR 0 428 3 3313 114 110 9 chrX 94290 94844 -176879296 + MER4B LTR ERV1 1 610 0 2413 141 31 9 chrX 95202 95627 -176878513 - MER4E LTR ERV1 -1 778 345 832 105 3 238 chrX 95620 95641 -176878499 - MER4D LTR ERV1 -653 219 195 * 2114 130 3 13 chrX 95641 95940 -176878200 - AluJb SINE Alu -16 296 1 832 105 3 238 chrX 95940 96097 -176878043 - MER4D LTR ERV1 -677 195 3 2562 75 0 0 chrX 96097 96405 -176877735 - AluY SINE Alu -3 308 1 2048 128 7 3 chrX 96415 96704 -176877436 - AluSx SINE Alu -22 290 1 832 105 3 238 chrX 96704 96799 -176877341 - MER4D LTR ERV1 -755 117 1 285 290 45 52 chrX 97223 97378 -176876762 - L2 LINE L2 -1 3312 3159 72 89 0 0 chrX 97378 97569 -176876571 + AT_rich Low_complexity Low_complexity 1 191 0 1184 102 0 0 chrX 98021 98033 -176876107 - AluSg/x SINE Alu -2 310 299 421 81 0 0 chrX 98033 98095 -176876045 - L1PB1 LINE L1 0 6151 6090 1184 102 0 0 chrX 98095 98248 -176875892 - AluSg/x SINE Alu -12 300 145 1915 146 10 0 chrX 98307 98609 -176875531 + AluSx SINE Alu 1 305 -7 207 0 0 0 chrX 98690 98713 -176875427 + (TG)n Simple_repeat Simple_repeat 1 23 0 426 228 39 63 chrX 98721 98848 -176875292 - MLT1G1 LTR MaLR -8 587 464 228 91 36 91 chrX 99092 99122 -176875018 - MLT2B2 LTR ERVL -6 509 482 471 118 0 0 chrX 99122 99198 -176874942 + (TGGA)n Simple_repeat Simple_repeat 2 77 0 228 91 36 91 chrX 99198 99222 -176874918 - MLT2B2 LTR ERVL -33 482 458 180 0 0 0 chrX 99258 99278 -176874862 + (GA)n Simple_repeat Simple_repeat 1 20 0 544 82 47 31 chrX 99294 99562 -176874578 + (TAGA)n Simple_repeat Simple_repeat 1 272 0 601 141 28 34 chrX 99586 99763 -176874377 + (TAGA)n Simple_repeat Simple_repeat 3 178 0 1914 102 0 25 chrX 100650 100962 -176873178 - AluSx SINE Alu 0 309 5 1755 161 7 20 chrX 101352 101657 -176872483 + AluJb SINE Alu 1 301 -11 364 288 68 27 chrX 101737 101883 -176872257 - MLT1J LTR MaLR -153 358 207 21 36 0 0 chrX 102862 102890 -176871250 + AT_rich Low_complexity Low_complexity 1 28 0 391 252 78 9 chrX 103110 103225 -176870915 - MLT1J LTR MaLR -153 358 236 360 183 49 24 chrX 103418 103500 -176870640 + MLT1H LTR MaLR 52 135 -420 536 219 214 26 chrX 104044 104236 -176869904 - MLT1J LTR MaLR -46 465 238 481 275 24 24 chrX 104429 104596 -176869544 + MLT1H LTR MaLR 94 260 -289 303 174 35 0 chrX 104629 104715 -176869425 + GA-rich Low_complexity Low_complexity 1 89 0 2189 153 70 48 chrX 104744 105203 -176868937 - MLT1D LTR MaLR 0 505 37 451 66 16 0 chrX 105197 105258 -176868882 - THE1C LTR MaLR -313 62 1 * 590 195 0 159 chrX 105460 105529 -176868611 + MLT1D LTR MaLR 8 86 -419 1783 218 49 13 chrX 105529 105979 -176868161 - MLT1C LTR MaLR 0 467 2 590 195 0 159 chrX 105979 106001 -176868139 + MLT1D LTR MaLR 86 110 -395 1457 103 45 232 chrX 106001 106449 -176867691 - THE1B LTR MaLR 0 364 1 590 195 0 159 chrX 106449 106551 -176867589 + MLT1D LTR MaLR 110 171 -334 1634 175 3 13 chrX 106586 106900 -176867240 - AluJo SINE Alu -1 311 1 823 173 8 0 chrX 106900 107033 -176867107 - AluJo SINE Alu -177 135 2 913 158 0 49 chrX 107052 107235 -176866905 - L1MA4 LINE L1 -7 6293 6119 2138 114 16 0 chrX 107235 107541 -176866599 + AluSx SINE Alu 1 311 -1 913 158 0 49 chrX 107541 107560 -176866580 - L1MA4 LINE L1 -181 6119 6101 2033 115 20 3 chrX 107574 107879 -176866261 + AluSx SINE Alu 1 310 -2 189 0 0 0 chrX 108003 108024 -176866116 + (A)n Simple_repeat Simple_repeat 1 21 0 27 0 0 0 chrX 108166 108193 -176865947 + AT_rich Low_complexity Low_complexity 1 27 0 195 42 0 0 chrX 108360 108384 -176865756 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1484 157 8 0 chrX 108386 108641 -176865499 - AluJo SINE Alu -30 282 26 891 232 46 46 chrX 108797 109077 -176865063 + PABL_A LTR ERV1 381 660 0 1572 201 84 43 chrX 109152 109594 -176864546 - MER31A LTR ERV1 -25 460 1 1730 158 44 0 chrX 110299 110596 -176863544 + AluJb SINE Alu 1 310 -2 481 239 82 0 chrX 110667 110801 -176863339 + L1M4 LINE L1 4971 5115 -1031 219 36 0 0 chrX 110806 110834 -176863306 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 1953 90 25 7 chrX 110857 111158 -176862982 + AluSc SINE Alu 1 306 0 2189 104 0 13 chrX 111159 111467 -176862673 - AluSq SINE Alu -9 304 1 324 206 100 123 chrX 111467 111637 -176862503 - MER34C LTR ERV1 -409 176 11 587 191 61 9 chrX 111645 111760 -176862380 + MER89 LTR ERV1 417 537 -22 2026 95 0 30 chrX 111810 112106 -176862034 - AluSx SINE Alu -14 298 12 1873 161 3 0 chrX 112129 112440 -176861700 - AluJb SINE Alu 0 312 1 285 317 0 0 chrX 112642 112724 -176861416 - MIR SINE MIR -11 251 170 365 219 47 60 chrX 113208 113372 -176860768 + MER34 LTR ERV1 5 191 -351 2630 108 0 5 chrX 113396 113768 -176860372 - L1PB1 LINE L1 0 6151 5782 265 263 0 0 chrX 113769 113849 -176860291 + L1MC4 LINE L1 6624 6703 -1339 * 299 89 0 0 chrX 113838 113883 -176860257 + L1P5 LINE L1 5782 5826 -325 324 356 0 0 chrX 113886 113976 -176860164 - L1MC4 LINE L1 -1339 6703 6614 1312 102 2 33 chrX 113991 114203 -176859937 - L1P5 LINE L1 -360 5791 5586 1291 196 38 38 chrX 114225 114339 -176859801 + MER57B LTR ERV1 1 114 -320 1725 140 238 14 chrX 114339 114688 -176859452 - MSTA LTR MaLR -1 427 1 1291 196 38 38 chrX 114688 114864 -176859276 + MER57B LTR ERV1 113 291 -143 379 165 89 0 chrX 114871 114950 -176859190 + LTR26B LTR ERV1 446 531 0 662 218 28 0 chrX 114972 115114 -176859026 + MLT1A1 LTR MaLR 220 365 0 1872 111 17 34 chrX 115236 115578 -176858562 - AluSx SINE Alu 0 337 1 651 175 56 81 chrX 115578 115738 -176858402 - MLT1A1 LTR MaLR -209 156 1 4234 115 6 9 chrX 116148 116737 -176857403 + MER41B LTR ERV1 1 589 -46 4133 58 24 7 chrX 116737 117286 -176856854 + LTR6B LTR ERV1 1 558 0 4234 115 6 9 chrX 117286 117333 -176856807 + MER41B LTR ERV1 589 635 0 533 85 24 12 chrX 117650 117732 -176856408 - MER4E LTR ERV1 0 766 684 3493 126 35 6 chrX 117732 118270 -176855870 + MER41A LTR ERV1 1 554 0 1647 214 76 31 chrX 118315 118760 -176855380 + MER50 LTR ERV1 251 715 -19 545 121 12 0 chrX 118788 118871 -176855269 + L1MB2 LINE L1 6023 6106 -65 841 147 0 15 chrX 118897 119033 -176855107 - AluJb SINE Alu -177 135 2 333 149 15 0 chrX 119033 119100 -176855040 + L1MB2 LINE L1 6100 6167 -4 2050 136 3 0 chrX 119372 119682 -176854458 - AluSx SINE Alu -1 311 1 293 89 0 0 chrX 119914 119959 -176854181 - Alu SINE Alu -7 295 251 720 162 0 0 chrX 120012 120123 -176854017 - AluSg/x SINE Alu -7 305 195 1578 170 3 17 chrX 120173 120467 -176853673 + AluJb SINE Alu 1 290 -22 367 260 10 0 chrX 120532 120628 -176853512 - MIR SINE MIR -42 220 124 466 204 21 126 chrX 120749 120853 -176853287 + L1MC4 LINE L1 6822 6899 -1143 2279 90 0 0 chrX 120853 121154 -176852986 + AluSx SINE Alu 1 301 -11 466 204 21 126 chrX 121154 121240 -176852900 + L1MC4 LINE L1 6899 6992 -1050 944 147 0 35 chrX 121240 121410 -176852730 + FRAM SINE Alu 1 163 -13 238 353 45 8 chrX 121513 121646 -176852494 + L1MC4 LINE L1 7092 7229 -813 1638 163 6 38 chrX 121843 122163 -176851977 + AluJo SINE Alu 1 310 -2 2149 124 7 0 chrX 122192 122499 -176851641 - AluSx SINE Alu -3 309 1 22 0 0 0 chrX 122507 122529 -176851611 + AT_rich Low_complexity Low_complexity 1 22 0 29 0 0 0 chrX 122853 122882 -176851258 + AT_rich Low_complexity Low_complexity 1 29 0 327 230 0 0 chrX 122882 122956 -176851184 - L1PA16 LINE L1 -9 6157 6084 1164 147 0 11 chrX 122985 123162 -176850978 - MER4A LTR ERV1 0 664 490 825 114 8 0 chrX 123517 123649 -176850491 - L1MA5A LINE L1 -226 6071 5939 1183 149 4 54 chrX 123669 123687 -176850453 + L1MA5A LINE L1 6065 6082 -215 3582 127 15 2 chrX 123687 124207 -176849933 + MER1A DNA MER1_type 1 527 0 1183 149 4 54 chrX 124207 124429 -176849711 + L1MA5A LINE L1 6082 6293 -4 1824 151 0 7 chrX 124530 124834 -176849306 - AluSx SINE Alu -10 302 1 1665 160 17 0 chrX 126879 127167 -176846973 - AluJo SINE Alu -18 294 2 294 175 0 0 chrX 127320 127377 -176846763 - MER4-int LTR ERV1 -5430 1168 1112 243 0 0 0 chrX 127602 127629 -176846511 + (CA)n Simple_repeat Simple_repeat 2 28 0 525 132 40 20 chrX 127753 127905 -176846235 + (TCTA)n Simple_repeat Simple_repeat 3 157 0 538 154 22 33 chrX 127936 128118 -176846022 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 297 136 36 27 chrX 128183 128229 -176845911 + (TAGA)n Simple_repeat Simple_repeat 3 47 -66 2170 90 17 0 chrX 128229 128528 -176845612 + AluSx SINE Alu 1 304 -8 297 136 36 27 chrX 128528 128591 -176845549 + (TAGA)n Simple_repeat Simple_repeat 47 113 0 21 0 0 0 chrX 128697 128718 -176845422 + AT_rich Low_complexity Low_complexity 1 21 0 1345 161 93 43 chrX 129224 129526 -176844614 + AluJo SINE Alu 1 312 0 849 119 0 0 chrX 130711 130829 -176843311 + FLAM_C SINE Alu 1 118 -25 1985 34 0 4 chrX 130836 131070 -176843070 - AluY SINE Alu -21 290 58 1938 117 0 0 chrX 131179 131452 -176842688 - AluSq SINE Alu -40 273 1 324 206 100 123 chrX 131452 131622 -176842518 - MER34C LTR ERV1 -409 176 11 587 191 61 9 chrX 131630 131745 -176842395 + MER89 LTR ERV1 417 537 -22 2026 95 0 30 chrX 131795 132091 -176842049 - AluSx SINE Alu -14 298 12 1261 248 3 0 chrX 132110 132421 -176841719 - AluJb SINE Alu 0 312 1 22 0 0 0 chrX 132902 132924 -176841216 + AT_rich Low_complexity Low_complexity 1 22 0 243 0 0 0 chrX 133067 133094 -176841046 + (A)n Simple_repeat Simple_repeat 1 27 0 546 227 161 39 chrX 133603 133707 -176840433 + MLT1J2 LTR MaLR 126 216 -234 653 248 25 20 chrX 133707 133909 -176840231 - MER105 DNA DNA -1 203 1 546 227 161 39 chrX 133909 134075 -176840065 + MLT1J2 LTR MaLR 216 450 0 296 338 46 70 chrX 134470 134754 -176839386 - L2 LINE L2 -55 3258 2982 1792 135 40 20 chrX 135015 135318 -176838822 - AluSx SINE Alu -3 309 1 1091 196 12 80 chrX 135338 135760 -176838380 + L1MA9 LINE L1 5946 6324 -10 25 31 0 0 chrX 135765 135797 -176838343 + AT_rich Low_complexity Low_complexity 1 32 0 228 306 105 24 chrX 135989 136113 -176838027 - MIR SINE MIR -74 188 55 2052 102 0 3 chrX 137391 137721 -176836419 - AluSx SINE Alu 0 329 1 550 293 99 92 chrX 138182 138625 -176835515 + L1MEc LINE L1 786 1156 -5049 1967 106 0 3 chrX 138625 138938 -176835202 + AluSx SINE Alu 1 312 0 550 293 99 92 chrX 138938 139047 -176835093 + L1MEc LINE L1 1156 1263 -4942 1771 147 16 3 chrX 139186 139492 -176834648 + AluJb SINE Alu 1 310 -2 1915 172 21 3 chrX 139733 140059 -176834081 + MER2 DNA MER2_type 7 338 -7 1276 99 0 6 chrX 140276 140458 -176833682 - L1PA8 LINE L1 0 6172 5992 880 64 0 0 chrX 140650 140760 -176833380 - AluSx SINE Alu -9 301 192 978 128 0 0 chrX 140761 140902 -176833238 - AluSx SINE Alu -171 141 1 2128 118 0 3 chrX 141009 141315 -176832825 - AluSx SINE Alu -7 305 1 502 146 12 0 chrX 141315 141397 -176832743 + Tigger5 DNA MER2_type 2241 2323 0 4978 136 13 19 chrX 142302 142632 -176831508 - L1MA5A LINE L1 0 6297 5967 1746 152 3 3 chrX 142632 142915 -176831225 - AluJb SINE Alu -29 283 1 4978 136 13 19 chrX 142915 143442 -176830698 - L1MA5A LINE L1 -330 5967 5445 2032 126 13 10 chrX 144069 144379 -176829761 + AluSx SINE Alu 1 311 -1 453 134 62 52 chrX 144561 144658 -176829482 + MER4A LTR ERV1 1 98 -566 1686 103 22 43 chrX 144658 144977 -176829163 + MER4A LTR ERV1 263 633 -31 1821 199 40 49 chrX 146043 146524 -176827616 - MLT1D LTR MaLR -1 488 27 2244 121 0 0 chrX 147408 147713 -176826427 + AluSx SINE Alu 1 305 -7 180 0 0 0 chrX 147774 147794 -176826346 + (A)n Simple_repeat Simple_repeat 1 20 0 349 209 85 69 chrX 149590 149806 -176824334 - MER106B DNA MER1_type -10 1049 3 965 252 103 50 chrX 149892 149951 -176824189 - Charlie1b DNA MER1_type -2259 502 448 1804 150 7 16 chrX 149951 150258 -176823882 - AluJb SINE Alu -8 304 1 965 252 103 50 chrX 150258 150675 -176823465 - Charlie1b DNA MER1_type -2313 448 1 391 307 0 0 chrX 150728 150881 -176823259 + (TA)n Simple_repeat Simple_repeat 2 154 0 259 141 16 62 chrX 150897 151025 -176823115 + (TAGA)n Simple_repeat Simple_repeat 1 122 0 203 146 0 42 chrX 151055 151103 -176823037 + (TAGA)n Simple_repeat Simple_repeat 1 46 0 344 145 5 72 chrX 151129 151322 -176822818 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 568 145 11 43 chrX 151352 151538 -176822602 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 702 11 32 0 chrX 151623 151718 -176822422 + (TAGA)n Simple_repeat Simple_repeat 3 100 0 524 191 0 71 chrX 152455 152499 -176821641 + MER58A DNA MER1_type 45 91 -250 1512 135 9 120 chrX 152499 152832 -176821308 - AluJo SINE Alu -16 296 1 524 191 0 71 chrX 152832 152850 -176821290 + MER58A DNA MER1_type 91 109 -232 1899 205 6 0 chrX 152850 153196 -176820944 + MER7A DNA MER2_type 1 346 0 524 191 0 71 chrX 153196 153258 -176820882 + MER58A DNA MER1_type 109 161 -63 2019 140 7 0 chrX 153501 153786 -176820354 - AluSx SINE Alu -25 287 1 1274 148 14 0 chrX 154002 154212 -176819928 + AluSg/x SINE Alu 86 298 -14 2183 93 14 0 chrX 154931 155247 -176818893 + AluSx SINE Alu 1 320 0 1260 115 0 0 chrX 155253 155427 -176818713 + AluSg/x SINE Alu 131 304 -8 1848 234 84 40 chrX 155982 156171 -176817969 + L1MC4a LINE L1 6787 6966 -842 1994 146 0 7 chrX 156171 156465 -176817675 - AluJo SINE Alu -20 292 1 1848 234 84 40 chrX 156465 156894 -176817246 + L1MC4a LINE L1 6966 7439 -369 2083 110 7 0 chrX 156894 157196 -176816944 + AluSx SINE Alu 1 304 0 1848 234 84 40 chrX 157196 157233 -176816907 + L1MC4a LINE L1 7439 7473 -335 2813 74 94 5 chrX 157507 157912 -176816228 - LTR7 LTR ERV1 -9 441 1 1846 161 3 11 chrX 158281 158605 -176815535 - AluJo SINE Alu 0 322 1 229 314 93 21 chrX 158613 158807 -176815333 - HAL1 LINE L1 -767 1740 1533 245 284 176 12 chrX 158827 159077 -176815063 - HAL1 LINE L1 -1059 1448 1158 253 299 69 0 chrX 159248 159335 -176814805 - L1ME LINE L1 -401 5720 5628 717 106 10 0 chrX 159654 159758 -176814382 - L1MA2 LINE L1 -56 6248 6144 2281 79 23 13 chrX 159878 160181 -176813959 - AluSx SINE Alu -6 306 1 552 255 60 0 chrX 160462 160611 -176813529 + MER20 DNA MER1_type 48 205 -14 423 0 0 0 chrX 160687 160734 -176813406 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1967 105 3 57 chrX 160735 161031 -176813109 - AluSx SINE Alu -32 280 1 1593 159 4 15 chrX 161668 161938 -176812202 - AluJo SINE Alu -5 307 41 30 0 0 0 chrX 162031 162061 -176812079 + AT_rich Low_complexity Low_complexity 1 30 0 2237 113 0 25 chrX 162063 162382 -176811758 + AluSx SINE Alu 1 311 -1 318 203 0 0 chrX 162385 162449 -176811691 + L1MC4 LINE L1 6640 6703 -1339 23 0 0 0 chrX 162450 162473 -176811667 + AT_rich Low_complexity Low_complexity 1 23 0 21 57 0 0 chrX 162495 162530 -176811610 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chrX 162548 162570 -176811570 + AT_rich Low_complexity Low_complexity 1 22 0 507 218 11 22 chrX 162607 162786 -176811354 + (CATATA)n Simple_repeat Simple_repeat 2 178 0 234 197 53 53 chrX 162805 162881 -176811259 + L1MC3 LINE L1 6571 6646 -1139 652 221 2 10 chrX 162881 163473 -176810667 + (CATATA)n Simple_repeat Simple_repeat 1 587 0 214 270 0 58 chrX 163522 163696 -176810444 + (CATATA)n Simple_repeat Simple_repeat 2 165 0 243 231 103 0 chrX 163699 163777 -176810363 - L1MC4 LINE L1 -1344 6698 6613 1744 170 0 38 chrX 164280 164598 -176809542 + AluJb SINE Alu 1 306 -6 2070 128 10 3 chrX 165109 165405 -176808735 + AluJb SINE Alu 1 298 -14 1760 174 16 10 chrX 165729 166039 -176808101 + AluJo SINE Alu 1 312 0 630 168 23 12 chrX 166753 166926 -176807214 + (TCCA)n Simple_repeat Simple_repeat 3 177 0 600 134 53 12 chrX 166959 167130 -176807010 + (TCTA)n Simple_repeat Simple_repeat 1 178 0 682 116 35 17 chrX 167144 167316 -176806824 + (TCTA)n Simple_repeat Simple_repeat 3 177 0 448 86 86 19 chrX 167371 167533 -176806607 + (TCTA)n Simple_repeat Simple_repeat 4 176 0 181 158 53 0 chrX 167563 167620 -176806520 + (TCTA)n Simple_repeat Simple_repeat 1 60 0 1320 161 87 0 chrX 168162 168416 -176805724 - L1MB5 LINE L1 -6 6168 5893 1510 178 68 0 chrX 168455 168748 -176805392 - L1MB5 LINE L1 -14 6160 5848 837 251 55 42 chrX 169334 169737 -176804403 + HAL1 LINE L1 970 1377 -1130 348 83 0 0 chrX 169754 169802 -176804338 + (GGGGA)n Simple_repeat Simple_repeat 4 51 0 302 260 123 62 chrX 169854 170146 -176803994 + HAL1 LINE L1 1404 1713 -794 23 0 0 0 chrX 170168 170191 -176803949 + AT_rich Low_complexity Low_complexity 1 23 0 901 179 7 0 chrX 170191 170336 -176803804 + FRAM SINE Alu 12 157 -19 393 22 0 0 chrX 170337 170383 -176803757 + (TG)n Simple_repeat Simple_repeat 2 47 0 1601 179 23 0 chrX 171250 171513 -176802627 - AluJo SINE Alu -25 287 19 1792 111 16 46 chrX 171528 171834 -176802306 - AluJo SINE Alu -10 302 6 905 173 113 90 chrX 172401 172756 -176801384 - MLT1C LTR MaLR 0 390 61 3924 107 42 23 chrX 172756 173355 -176800785 + MER4B LTR ERV1 1 610 0 905 173 113 90 chrX 173355 173413 -176800727 - MLT1C LTR MaLR -329 61 6 1980 177 8 20 chrX 174789 175184 -176798956 + MLT1B LTR MaLR 1 390 0 1588 128 76 49 chrX 175210 175387 -176798753 + MLT1B LTR MaLR 1 191 -199 2230 110 0 0 chrX 175387 175679 -176798461 + AluSp SINE Alu 1 292 -21 1588 128 76 49 chrX 175679 175789 -176798351 + MLT1B LTR MaLR 191 296 -94 487 265 19 31 chrX 176029 176191 -176797949 + Charlie1 DNA MER1_type 2163 2322 -439 259 246 33 16 chrX 176599 176660 -176797480 - HERVL74 LTR ERVL -4776 909 848 924 130 0 0 chrX 176856 176979 -176797161 + FLAM_C SINE Alu 1 123 -20 23 54 0 0 chrX 176979 177016 -176797124 + AT_rich Low_complexity Low_complexity 1 37 0 1945 141 7 7 chrX 177277 177583 -176796557 - AluJo SINE Alu -6 306 1 26 0 0 0 chrX 178644 178670 -176795470 + GC_rich Low_complexity Low_complexity 1 26 0 23 54 0 0 chrX 178799 178836 -176795304 + GC_rich Low_complexity Low_complexity 1 37 0 27 29 0 0 chrX 178943 178977 -176795163 + GC_rich Low_complexity Low_complexity 1 34 0 189 154 0 0 chrX 179192 179231 -176794909 + (TGAA)n Simple_repeat Simple_repeat 1 39 0 222 236 0 18 chrX 179274 179329 -176794811 + (CATG)n Simple_repeat Simple_repeat 1 54 0 358 270 3 17 chrX 179376 179739 -176794401 + (TGAA)n Simple_repeat Simple_repeat 1 357 0 198 289 0 0 chrX 179758 179907 -176794233 + (TGAA)n Simple_repeat Simple_repeat 4 152 0 195 162 0 0 chrX 179967 180004 -176794136 + (TGAG)n Simple_repeat Simple_repeat 1 37 0 321 304 19 6 chrX 180011 180172 -176793968 + (TGAA)n Simple_repeat Simple_repeat 1 163 0 403 186 0 16 chrX 180254 180383 -176793757 + (TGAA)n Simple_repeat Simple_repeat 4 130 0 427 216 28 33 chrX 180406 180664 -176793476 + (TGAG)n Simple_repeat Simple_repeat 1 256 0 3513 171 2 0 chrX 181125 181715 -176792425 - L1PB4 LINE L1 -3 6153 5563 593 264 46 42 chrX 182214 182430 -176791710 - MER20 DNA MER1_type -2 217 1 565 131 51 17 chrX 182432 182652 -176791488 + (TAGA)n Simple_repeat Simple_repeat 1 262 -15 246 32 0 0 chrX 182652 182683 -176791457 + (ATG)n Simple_repeat Simple_repeat 2 32 0 565 131 51 17 chrX 182683 182700 -176791440 + (TAGA)n Simple_repeat Simple_repeat 262 277 0 354 163 20 82 chrX 183327 183425 -176790715 - L2 LINE L2 0 3313 3222 795 251 94 59 chrX 183429 183736 -176790404 - L2 LINE L2 -49 3264 2947 1821 281 33 12 chrX 183745 184385 -176789755 - L2 LINE L2 -509 2805 2153 8799 51 15 3 chrX 184513 185648 -176788492 + L1PA13 LINE L1 3682 4830 -1316 5601 113 1 4 chrX 185749 186560 -176787580 + L1PA13 LINE L1 5355 6163 0 1696 81 5 14 chrX 186560 186781 -176787359 + AluY SINE Alu 1 219 -92 3726 148 48 17 chrX 186883 187307 -176786833 + L1M1 LINE L1 2977 3386 -4179 297 0 0 0 chrX 187307 187340 -176786800 + (CA)n Simple_repeat Simple_repeat 2 34 0 3726 148 48 17 chrX 187340 187899 -176786241 + L1M1 LINE L1 3386 3994 -3571 433 155 24 60 chrX 188054 188138 -176786002 + MLT1D LTR MaLR 5 85 -420 708 167 35 7 chrX 188145 188289 -176785851 + MER96B DNA MER1_type? 265 412 -5 305 368 35 7 chrX 188314 188458 -176785682 + L2 LINE L2 3107 3254 -18 207 241 46 0 chrX 188599 188686 -176785454 + (TATG)n Simple_repeat Simple_repeat 2 92 0 431 123 41 0 chrX 190169 190242 -176783898 - L1MA3 LINE L1 -5 6300 6225 604 298 44 5 chrX 191039 191244 -176782896 + MIR SINE MIR 47 259 -3 312 205 137 87 chrX 191346 191507 -176782633 + L2 LINE L2 2622 2790 -524 8004 61 8 0 chrX 192922 193970 -176780170 + L1P LINE L1 1400 2455 -3691 292 251 128 21 chrX 194082 194277 -176779863 - MLT1C LTR MaLR -147 358 127 1235 196 27 4 chrX 194277 194537 -176779603 - L1MB5 LINE L1 -100 6074 5809 667 297 114 0 chrX 195709 195928 -176778212 - MIR SINE MIR 0 262 19 212 152 15 106 chrX 195934 196000 -176778140 + MIR SINE MIR 101 160 -102 2061 132 3 0 chrX 196280 196590 -176777550 + AluSx SINE Alu 1 311 -1 817 125 8 0 chrX 196592 196720 -176777420 + L1PB2 LINE L1 6023 6151 0 1060 204 103 43 chrX 197031 197093 -176777047 - MLT1C LTR MaLR -6 461 404 2019 125 3 0 chrX 197093 197389 -176776751 + AluSx SINE Alu 4 300 -12 1060 204 103 43 chrX 197389 197655 -176776485 - MLT1C LTR MaLR -63 404 113 1093 171 11 0 chrX 197663 197850 -176776290 + MLT1B LTR MaLR 1 189 -201 700 212 71 119 chrX 197863 198075 -176776065 - MLT1C LTR MaLR -143 324 134 2021 114 0 0 chrX 198075 198364 -176775776 - AluSx SINE Alu -23 289 1 700 212 71 119 chrX 198364 198492 -176775648 - MLT1C LTR MaLR -333 134 1 767 248 109 8 chrX 198502 198807 -176775333 - MLT1C LTR MaLR -122 345 1 262 310 43 17 chrX 198825 198941 -176775199 - LTR33 LTR ERVL -370 151 33 2289 94 0 0 chrX 199016 199315 -176774825 + AluSg SINE Alu 1 299 -11 2242 95 10 0 chrX 200004 200310 -176773830 + AluSx SINE Alu 1 309 -3 670 166 19 39 chrX 200962 201478 -176772662 + (TAGA)n Simple_repeat Simple_repeat 1 800 -25 1649 196 0 0 chrX 201478 201779 -176772361 + AluJo SINE Alu 1 301 -11 670 166 19 39 chrX 201779 201805 -176772335 + (TAGA)n Simple_repeat Simple_repeat 800 825 0 334 247 26 0 chrX 201920 201997 -176772143 - MER20 DNA MER1_type 0 219 141 717 243 17 6 chrX 202023 202196 -176771944 + MLT1B LTR MaLR 293 467 0 2172 93 3 3 chrX 202251 202552 -176771588 - AluSq SINE Alu -12 301 1 649 193 96 0 chrX 202553 202688 -176771452 - MLT1A1 LTR MaLR -208 157 10 1787 157 10 3 chrX 202729 203028 -176771112 - MLT1A1 LTR MaLR -64 301 1 2273 89 0 0 chrX 203307 203609 -176770531 + AluY SINE Alu 1 302 -9 2023 123 3 3 chrX 203802 204104 -176770036 + AluSx SINE Alu 1 302 -10 485 234 0 19 chrX 204591 204698 -176769442 + MER5A DNA MER1_type 1 105 -84 2203 249 38 23 chrX 204778 205304 -176768836 - MER87 LTR ERV1 -7 534 1 233 69 0 0 chrX 205538 205567 -176768573 + (GA)n Simple_repeat Simple_repeat 1 29 0 580 161 27 13 chrX 205567 205716 -176768424 + GA-rich Low_complexity Low_complexity 4 154 0 2108 100 3 7 chrX 206300 206600 -176767540 + AluSx SINE Alu 6 304 -8 1195 168 21 66 chrX 206770 206901 -176767239 - L1MA8 LINE L1 0 6291 6156 2015 122 0 0 chrX 206901 207196 -176766944 - AluY SINE Alu -16 295 1 1195 168 21 66 chrX 207196 207350 -176766790 - L1MA8 LINE L1 -135 6156 6019 2025 227 92 50 chrX 207361 207506 -176766634 - MER50 LTR ERV1 -7 727 589 2179 106 0 3 chrX 207506 207808 -176766332 - AluSg SINE Alu -9 301 1 2025 227 92 50 chrX 207808 208234 -176765906 - MER50 LTR ERV1 -145 589 119 1743 100 104 11 chrX 208234 208503 -176765637 - AluSg1 SINE Alu -15 294 1 2025 227 92 50 chrX 208503 208627 -176765513 - MER50 LTR ERV1 -615 119 2 1031 165 11 21 chrX 208627 208815 -176765325 - L1MA8 LINE L1 -276 6015 5830 633 110 0 0 chrX 208819 208910 -176765230 - AluSg/x SINE Alu -6 303 213 632 105 62 18 chrX 209013 209522 -176764618 + GA-rich Low_complexity Low_complexity 1 531 0 1870 155 153 27 chrX 209629 210041 -176764099 + MER4C LTR ERV1 1 464 -1 21 0 0 0 chrX 210183 210204 -176763936 + GC_rich Low_complexity Low_complexity 1 21 0 407 223 9 0 chrX 210801 210913 -176763227 + (TGGA)n Simple_repeat Simple_repeat 4 116 0 180 368 69 11 chrX 211040 211127 -176763013 - MIR3 SINE MIR -114 94 3 412 250 0 17 chrX 211396 211512 -176762628 + AluSp SINE Alu 2 115 -198 344 186 0 0 chrX 211512 211571 -176762569 + MLT1C LTR MaLR 357 415 -52 1664 161 4 0 chrX 211582 211861 -176762279 - AluSx SINE Alu -29 283 4 817 125 8 0 chrX 212235 212363 -176761777 - L1PB2 LINE L1 0 6151 6023 2029 134 0 6 chrX 212365 212678 -176761462 - AluSx SINE Alu -1 311 1 514 208 102 19 chrX 213211 213380 -176760760 - MER39 LTR ERV1 -1 687 471 705 133 0 9 chrX 213380 213507 -176760633 - AluSx SINE Alu 0 309 189 685 89 11 0 chrX 213504 213594 -176760546 - AluSx SINE Alu -205 107 17 * 842 197 40 100 chrX 213594 213654 -176760486 - MER39 LTR ERV1 -178 529 467 4376 69 9 0 chrX 213654 214202 -176759938 - MER41A LTR ERV1 -1 553 1 842 197 40 100 chrX 214202 214440 -176759700 - MER39 LTR ERV1 -240 467 249 242 196 20 0 chrX 214453 214504 -176759636 - MER39 LTR ERV1 -655 52 1 1149 107 24 0 chrX 214863 215031 -176759109 + AluSg/x SINE Alu 136 307 -5 2036 110 3 0 chrX 215455 215746 -176758394 - AluSx SINE Alu -18 294 3 290 315 153 20 chrX 215990 216193 -176757947 + MARNA DNA Mariner 104 333 -253 2242 107 3 0 chrX 217212 217522 -176756618 - AluSx SINE Alu -1 311 1 254 136 0 0 chrX 217774 217818 -176756322 - Alu SINE Alu -2 299 256 756 233 3 6 chrX 217918 218277 -176755863 + (TCCA)n Simple_repeat Simple_repeat 1 358 0 368 292 21 108 chrX 218470 218606 -176755534 - MLT1J LTR MaLR -64 447 338 2185 78 0 0 chrX 218606 218924 -176755216 + AluSg SINE Alu 1 318 0 368 292 21 108 chrX 218924 219026 -176755114 - MLT1J LTR MaLR -173 338 229 180 111 0 0 chrX 219026 219053 -176755087 + (A)n Simple_repeat Simple_repeat 1 27 0 1602 170 7 3 chrX 220067 220361 -176753779 - AluJb SINE Alu -17 295 1 262 324 101 26 chrX 221558 221904 -176752236 + L1ME LINE L1 5490 5861 -260 619 273 17 0 chrX 222683 222855 -176751285 - MER45A DNA AcHobo -3 175 1 1969 126 7 0 chrX 223654 223955 -176750185 - AluSp SINE Alu -10 303 1 2047 202 8 0 chrX 224084 224475 -176749665 + L1MB5 LINE L1 5745 6138 -36 2403 76 0 0 chrX 224479 224783 -176749357 + AluSg SINE Alu 1 304 -6 1394 182 14 17 chrX 224793 225089 -176749051 + AluJo SINE Alu 1 295 -17 218 237 31 31 chrX 226062 226159 -176747981 + GA-rich Low_complexity Low_complexity 2 98 0 832 145 0 22 chrX 226408 226546 -176747594 + AluJo SINE Alu 1 135 -177 327 161 0 0 chrX 227540 227596 -176746544 + L1MA7 LINE L1 6233 6288 -3 1933 104 0 0 chrX 227605 227873 -176746267 + AluSg SINE Alu 39 306 -4 897 254 40 40 chrX 228057 228356 -176745784 + Charlie4a DNA MER1_type 12 310 -198 214 245 0 47 chrX 229499 229605 -176744535 + C-rich Low_complexity Low_complexity 4 104 0 1953 112 0 3 chrX 229705 229991 -176744149 + AluSx SINE Alu 14 298 -14 181 0 33 33 chrX 229993 230023 -176744117 + (TATAA)n Simple_repeat Simple_repeat 4 33 0 2278 75 0 7 chrX 230512 230818 -176743322 + AluY SINE Alu 1 304 -7 1478 198 0 24 chrX 231017 231310 -176742830 - AluJb SINE Alu -19 293 8 237 232 0 0 chrX 231359 231428 -176742712 + GA-rich Low_complexity Low_complexity 2 70 0 309 236 28 28 chrX 231504 231610 -176742530 - MLT1J2 LTR MaLR 0 450 345 1240 202 12 62 chrX 232021 232069 -176742071 + L1MB8 LINE L1 5569 5618 -560 2123 114 91 26 chrX 232069 232411 -176741729 - THE1B LTR MaLR 0 364 1 1240 202 12 62 chrX 232411 232682 -176741458 + L1MB8 LINE L1 5618 5873 -305 1689 163 0 43 chrX 232682 233008 -176741132 + AluSx SINE Alu 1 312 0 1240 202 12 62 chrX 233008 233023 -176741117 + L1MB8 LINE L1 5873 5887 -291 274 109 43 0 chrX 233067 233113 -176741027 - MER34C LTR ERV1 -533 52 5 * 354 123 46 0 chrX 233081 233146 -176740994 - MER34C LTR ERV1 -512 73 6 382 275 50 102 chrX 234087 234387 -176739753 - LTR16C LTR ERVL -14 477 153 2392 156 51 10 chrX 234387 234798 -176739342 - MSTA LTR MaLR 0 428 1 382 275 50 102 chrX 234798 234903 -176739237 - LTR16C LTR ERVL -338 153 44 3741 121 23 62 chrX 235200 235313 -176738827 - MER41B LTR ERV1 0 635 519 1689 199 0 0 chrX 235313 235619 -176738521 + AluJo SINE Alu 1 306 -6 3741 121 23 62 chrX 235619 236166 -176737974 - MER41B LTR ERV1 -116 519 1 2268 97 0 3 chrX 236179 236487 -176737653 + AluSq SINE Alu 1 307 -6 1475 231 89 11 chrX 236530 236911 -176737229 + MER87 LTR ERV1 1 411 -130 216 0 0 0 chrX 237053 237077 -176737063 + (TTC)n Simple_repeat Simple_repeat 1 24 0 2186 92 16 0 chrX 237082 237387 -176736753 - AluSg SINE Alu 0 310 1 792 234 5 3 chrX 238313 238685 -176735455 + (TCCA)n Simple_repeat Simple_repeat 1 373 0 724 181 6 6 chrX 238702 238879 -176735261 + (TCCA)n Simple_repeat Simple_repeat 4 180 0 344 316 124 28 chrX 239629 239847 -176734293 + MIR SINE MIR 10 248 -14 2059 121 0 3 chrX 240142 240440 -176733700 + AluSg1 SINE Alu 1 297 -12 746 176 12 44 chrX 240599 240826 -176733314 - L1M4c LINE L1 -4768 1616 1356 1924 185 83 46 chrX 241181 241661 -176732479 + MLT1D LTR MaLR 2 499 -6 2295 97 0 13 chrX 242510 242818 -176731322 - AluY SINE Alu -7 304 1 1412 97 0 20 chrX 243479 243652 -176730488 - AluSg/x SINE Alu -6 304 134 2245 107 7 0 chrX 243652 243942 -176730198 - AluSx SINE Alu -20 292 1 1412 97 0 20 chrX 243942 243964 -176730176 - AluSg/x SINE Alu -176 134 113 1500 260 48 9 chrX 244193 244632 -176729508 + MLT1D LTR MaLR 1 456 -49 847 181 0 0 chrX 244784 244917 -176729223 - FLAM_C SINE Alu 0 133 1 1928 176 3 0 chrX 244923 245229 -176728911 - AluSx SINE Alu -5 307 1 1735 120 0 4 chrX 245843 246076 -176728064 + AluSg SINE Alu 4 235 -75 1234 123 24 0 chrX 246176 246366 -176727774 + AluSg/x SINE Alu 108 301 0 2358 94 3 0 chrX 247096 247394 -176726746 + AluSp SINE Alu 1 299 -14 307 286 0 0 chrX 247577 247654 -176726486 + (TG)n Simple_repeat Simple_repeat 2 78 0 558 205 3 30 chrX 247659 247994 -176726146 + (TATG)n Simple_repeat Simple_repeat 1 325 0 208 234 0 37 chrX 248018 248125 -176726015 + (TATG)n Simple_repeat Simple_repeat 2 104 0 1589 160 79 18 chrX 248519 248833 -176725307 + MER65A LTR ERV1 82 420 -25 2046 142 80 17 chrX 248833 249235 -176724905 - MSTA LTR MaLR 0 428 2 1589 160 79 18 chrX 249235 249263 -176724877 + MER65A LTR ERV1 420 445 0 319 230 12 21 chrX 250032 250374 -176723766 + (TCTA)n Simple_repeat Simple_repeat 1 338 0 367 170 22 39 chrX 250403 250585 -176723555 + (TCTA)n Simple_repeat Simple_repeat 2 180 0 2382 102 0 0 chrX 250886 251189 -176722951 - AluSx SINE Alu -9 303 1 2383 94 3 0 chrX 251199 251497 -176722643 - AluSp SINE Alu -14 299 1 1264 118 0 0 chrX 252354 252524 -176721616 - AluSg/x SINE Alu -9 303 134 2260 111 0 3 chrX 252524 252830 -176721310 - AluSx SINE Alu -7 305 1 3088 169 9 0 chrX 252947 253487 -176720653 + L1PA16 LINE L1 5584 6128 -38 332 212 0 30 chrX 253626 253692 -176720448 + L1MC4 LINE L1 6641 6704 -1338 356 297 0 22 chrX 253745 253836 -176720304 - L1MC4 LINE L1 -1339 6703 6615 258 300 0 0 chrX 253838 253908 -176720232 + (TA)n Simple_repeat Simple_repeat 1 70 0 345 212 166 67 chrX 254002 254195 -176719945 - L2 LINE L2 -5 3308 3097 1615 213 9 42 chrX 254234 254661 -176719479 + L1M4 LINE L1 5377 5789 -389 25 0 0 0 chrX 254775 254800 -176719340 + GC_rich Low_complexity Low_complexity 1 25 0 2534 60 3 3 chrX 255253 255555 -176718585 + AluSp SINE Alu 1 302 -11 1686 178 3 30 chrX 255559 255862 -176718278 + AluJb SINE Alu 2 296 -16 3720 130 42 18 chrX 256482 256933 -176717207 + LTR9 LTR ERV1 1 471 -141 189 0 0 0 chrX 256933 256954 -176717186 + (TC)n Simple_repeat Simple_repeat 2 22 0 3720 130 42 18 chrX 256954 257100 -176717040 + LTR9 LTR ERV1 471 612 0 3873 61 15 81 chrX 257266 257858 -176716282 + MER41A LTR ERV1 2 554 0 2232 109 0 3 chrX 258351 258645 -176715495 + AluSx SINE Alu 16 308 -4 2500 126 37 0 chrX 258645 259027 -176715113 + L1PA11 LINE L1 5779 6174 0 1194 178 50 27 chrX 259042 259300 -176714840 + LTR49 LTR ERV1 98 361 -234 579 177 48 16 chrX 259321 259445 -176714695 - AluJb SINE Alu 0 312 185 22 0 0 0 chrX 259448 259470 -176714670 + AT_rich Low_complexity Low_complexity 1 22 0 1341 368 0 47 chrX 259487 259808 -176714332 + AluSx SINE Alu 5 310 -2 1617 189 20 14 chrX 259870 260166 -176713974 - AluJo SINE Alu -8 304 7 717 226 17 133 chrX 260194 260473 -176713667 - LTR52 LTR ERVL -26 395 164 2423 99 0 0 chrX 260473 260777 -176713363 - AluSx SINE Alu -8 304 1 717 226 17 133 chrX 260777 260851 -176713289 - LTR52 LTR ERVL -257 164 83 685 182 157 6 chrX 260873 261032 -176713108 - MSTA LTR MaLR -245 183 1 1675 188 48 58 chrX 261054 261448 -176712692 - MLT2B2 LTR ERVL -28 487 98 572 145 161 24 chrX 261568 261692 -176712448 - MSTB1 LTR MaLR -313 144 4 1866 185 34 27 chrX 261901 262448 -176711692 - MLT2A2 LTR ERVL 0 554 1 3124 169 4 24 chrX 262500 263038 -176711102 - MER1A DNA MER1_type 0 527 1 509 313 6 6 chrX 263200 263363 -176710777 - MER63A DNA MER1_type -4 206 44 2064 136 0 0 chrX 264091 264427 -176709713 - AluSx SINE Alu 0 336 1 2249 92 3 7 chrX 264433 264738 -176709402 - AluSx SINE Alu -6 306 3 257 315 167 6 chrX 265023 265185 -176708955 + MARNA DNA Mariner 146 333 -253 2230 105 7 0 chrX 266375 266670 -176707470 - AluSx SINE Alu -12 300 4 825 122 32 0 chrX 266684 266807 -176707333 - FLAM_C SINE Alu -2 131 5 2102 141 0 3 chrX 267210 267514 -176706626 + AluSx SINE Alu 1 303 -9 288 0 0 0 chrX 267694 267726 -176706414 + (CA)n Simple_repeat Simple_repeat 2 33 0 240 283 69 69 chrX 267802 267975 -176706165 + MIR SINE MIR 90 262 0 2388 100 0 3 chrX 268219 268530 -176705610 + AluSg SINE Alu 1 310 0 300 248 116 33 chrX 268690 268811 -176705329 + MIR SINE MIR 23 153 -55 56 61 0 0 chrX 271591 271689 -176702451 + GC_rich Low_complexity Low_complexity 1 98 0 342 283 103 68 chrX 271722 272150 -176701990 - L1M2 LINE L1 -5651 1198 756 192 97 0 0 chrX 272389 272420 -176701720 + (TC)n Simple_repeat Simple_repeat 2 32 0 183 220 0 0 chrX 273737 273787 -176700353 + (TG)n Simple_repeat Simple_repeat 1 50 0 3215 91 2 9 chrX 274118 274578 -176699562 - PABL_B LTR ERV1 -210 457 1 2020 112 0 69 chrX 274652 274978 -176699162 - AluSx SINE Alu 0 305 1 1277 168 112 56 chrX 275120 275388 -176698752 + AluJb SINE Alu 1 283 -29 3039 131 50 84 chrX 275678 276086 -176698054 - MER4A LTR ERV1 -4 596 215 2135 119 3 22 chrX 276086 276398 -176697742 - AluSq SINE Alu -4 309 4 3039 131 50 84 chrX 276398 276606 -176697534 - MER4A LTR ERV1 -385 215 1 1852 171 13 30 chrX 276607 276646 -176697494 - L1MA4 LINE L1 -15 6285 6247 261 83 0 0 chrX 276646 276682 -176697458 + (TA)n Simple_repeat Simple_repeat 2 37 0 1357 64 0 6 chrX 276684 276857 -176697283 - L1PA8 LINE L1 -14 6158 5987 1852 171 13 30 chrX 276857 277211 -176696929 - L1MA4 LINE L1 -54 6246 5896 2189 99 0 17 chrX 277348 277640 -176696500 + AluSg SINE Alu 24 310 0 1928 169 10 3 chrX 277716 278023 -176696117 + AluJb SINE Alu 1 309 -3 2438 94 0 3 chrX 278502 278810 -176695330 + AluSq SINE Alu 1 307 -6 1783 131 13 43 chrX 279002 279307 -176694833 - AluSx SINE Alu -16 296 1 1526 125 0 0 chrX 279307 279531 -176694609 + PABL_B LTR ERV1 444 667 0 2775 166 100 27 chrX 279867 280586 -176693554 + LTR1B LTR ERV1 1 754 -31 305 119 40 68 chrX 280633 280703 -176693437 + (TCTA)n Simple_repeat Simple_repeat 3 73 -101 2277 119 0 0 chrX 280703 280998 -176693142 + AluSg SINE Alu 2 296 -14 305 119 40 68 chrX 280998 281104 -176693036 + (TCTA)n Simple_repeat Simple_repeat 73 174 0 307 143 0 57 chrX 281113 281183 -176692957 + MLT2B1 LTR ERVL 455 520 0 2367 103 7 0 chrX 281387 281697 -176692443 + AluSq SINE Alu 1 312 -1 2201 125 3 3 chrX 281988 282299 -176691841 - AluSx SINE Alu -1 311 1 1543 177 7 35 chrX 282420 282541 -176691599 + AluJb SINE Alu 1 124 -188 1988 102 18 32 chrX 282541 282826 -176691314 - AluSx SINE Alu -9 303 23 1543 177 7 35 chrX 282826 282987 -176691153 + AluJb SINE Alu 124 275 -37 363 277 120 54 chrX 283013 283377 -176690763 + L1M4 LINE L1 981 3377 -1206 1635 165 4 0 chrX 283806 284061 -176690079 + AluJo SINE Alu 11 266 -46 1406 132 5 0 chrX 284209 284413 -176689727 - AluSq SINE Alu -108 205 1 443 252 25 69 chrX 284441 284600 -176689540 + MLT1C LTR MaLR 2 153 -314 339 156 0 16 chrX 284603 284667 -176689473 - MLT1A1 LTR MaLR -9 356 294 1007 225 76 31 chrX 284706 285028 -176689112 - MLT1A1 LTR MaLR -18 410 23 5595 54 1 0 chrX 285873 286557 -176687583 + L1PA7 LINE L1 5469 6153 -1 491 316 63 36 chrX 286903 287185 -176686955 - L1ME LINE L1 -4986 1617 1347 2307 119 3 0 chrX 287185 287497 -176686643 - AluSp SINE Alu 0 313 1 491 316 63 36 chrX 287497 287521 -176686619 - L1ME LINE L1 -5256 1347 1325 2526 133 23 14 chrX 287547 287977 -176686163 - MER57B LTR ERV1 0 434 1 2339 100 3 0 chrX 287988 288288 -176685852 + AluSp SINE Alu 5 305 -8 1496 86 4 78 chrX 288404 288636 -176685504 + AluSg/x SINE Alu 82 296 -14 870 132 0 0 chrX 288638 288759 -176685381 - AluJo/FLAM SINE Alu -189 123 3 2353 99 0 0 chrX 288862 289166 -176684974 + AluSg SINE Alu 1 304 -6 838 237 8 42 chrX 289172 289408 -176684732 - L1MC3 LINE L1 -421 7364 7137 198 56 0 56 chrX 289586 289622 -176684518 + (TTTTG)n Simple_repeat Simple_repeat 2 180 0 2022 135 4 0 chrX 289622 289903 -176684237 - AluSx SINE Alu -1 318 2 22 56 0 0 chrX 290041 290077 -176684063 + AT_rich Low_complexity Low_complexity 1 36 0 2276 145 0 0 chrX 290249 290560 -176683580 - AluSx SINE Alu 0 312 2 413 301 77 86 chrX 290593 291268 -176682872 + L1ME LINE L1 3 671 -5399 827 172 0 13 chrX 291463 291690 -176682450 + (ATG)n Simple_repeat Simple_repeat 1 224 0 1083 130 0 8 chrX 291709 292074 -176682066 + (ATG)n Simple_repeat Simple_repeat 1 361 0 238 292 10 31 chrX 292808 292904 -176681236 - Charlie4 DNA MER1_type -1764 197 104 1886 164 0 3 chrX 293144 293430 -176680710 - AluSx SINE Alu -25 287 3 2416 87 0 13 chrX 293754 294066 -176680074 - AluSc SINE Alu -1 308 1 2155 94 0 11 chrX 294075 294402 -176679738 - AluSc SINE Alu 0 324 1 2392 107 0 0 chrX 294622 294932 -176679208 + AluSx SINE Alu 1 310 -2 2011 131 37 67 chrX 295712 296034 -176678106 + THE1B LTR MaLR 1 313 -51 2059 124 0 3 chrX 296034 296353 -176677787 + AluSx SINE Alu 1 318 0 2011 131 37 67 chrX 296353 296403 -176677737 + THE1B LTR MaLR 313 363 -1 309 189 33 56 chrX 296440 296530 -176677610 - L1MB3 LINE L1 -5 6178 6091 354 295 108 39 chrX 297064 297451 -176676689 + LTR33 LTR ERVL 89 502 -19 1833 126 52 37 chrX 297559 297908 -176676232 - THE1B LTR MaLR -10 354 1 241 164 343 0 chrX 298183 298256 -176675884 + MER4A LTR ERV1 1 98 -566 1563 141 9 29 chrX 298256 298589 -176675551 + MER4A LTR ERV1 261 645 -19 645 201 113 2 chrX 298610 298829 -176675311 + L1MC3 LINE L1 7535 7993 -2 2218 125 6 3 chrX 298921 299232 -176674908 + AluSx SINE Alu 1 312 0 311 202 0 8 chrX 299966 300087 -176674053 + CT-rich Low_complexity Low_complexity 1 119 0 1688 183 0 14 chrX 300091 300375 -176673765 - AluJo SINE Alu -32 280 1 1974 157 27 76 chrX 300799 301095 -176673045 - MSTA LTR MaLR -4 424 156 2219 115 0 0 chrX 301095 301390 -176672750 + AluSq SINE Alu 1 295 -18 1974 157 27 76 chrX 301390 301539 -176672601 - MSTA LTR MaLR -272 156 1 2283 97 0 10 chrX 301584 301884 -176672256 - AluY SINE Alu -14 297 1 877 173 0 0 chrX 302216 302349 -176671791 + FLAM_C SINE Alu 1 133 0 365 39 0 19 chrX 302373 302425 -176671715 + (GGGA)n Simple_repeat Simple_repeat 4 54 0 309 248 31 23 chrX 302427 302556 -176671584 + (TTTG)n Simple_repeat Simple_repeat 3 132 0 231 215 69 0 chrX 302484 302628 -176671512 + (TG)n Simple_repeat Simple_repeat 2 155 0 * 2181 126 0 3 chrX 303462 303764 -176670376 + AluSx SINE Alu 1 301 -11 1064 243 7 95 chrX 304730 305147 -176668993 - MLT1E2 LTR MaLR -136 490 137 2041 112 0 0 chrX 305147 305449 -176668691 + AluSx SINE Alu 14 315 0 1064 243 7 95 chrX 305449 305572 -176668568 - MLT1E2 LTR MaLR -489 137 5 1017 154 0 0 chrX 305970 306119 -176668021 + AluJb SINE Alu 159 307 -5 249 57 0 0 chrX 306154 306189 -176667951 + (GA)n Simple_repeat Simple_repeat 2 36 0 324 0 0 0 chrX 306189 306225 -176667915 + (TG)n Simple_repeat Simple_repeat 2 37 0 1223 116 0 0 chrX 306521 306685 -176667455 + AluSg/x SINE Alu 137 300 -12 195 42 0 0 chrX 306794 306818 -176667322 + (CA)n Simple_repeat Simple_repeat 1 24 0 2177 104 10 3 chrX 306878 307177 -176666963 + AluSx SINE Alu 1 301 -11 2221 112 6 22 chrX 307355 307667 -176666473 + AluSq SINE Alu 1 307 -6 184 44 67 67 chrX 307674 307719 -176666421 + A-rich Low_complexity Low_complexity 2 46 0 3219 135 4 8 chrX 307921 308424 -176665716 - MER1A DNA MER1_type 0 529 29 1975 170 0 3 chrX 308681 308992 -176665148 - AluJo SINE Alu -2 310 1 579 67 0 0 chrX 309011 309086 -176665054 - Alu SINE Alu -6 305 231 1002 159 27 19 chrX 309087 309404 -176664736 + MLT2A2 LTR ERVL 229 447 -6 1198 207 30 30 chrX 309919 310218 -176663922 - MLT2D LTR ERVL 0 414 116 389 121 0 0 chrX 310219 310277 -176663863 + L1P4 LINE L1 5628 5685 -476 1887 109 0 12 chrX 310280 310527 -176663613 + AluSg SINE Alu 1 244 -66 1719 126 3 44 chrX 310591 310884 -176663256 - Tigger2a DNA MER2_type -153 281 1 307 194 97 32 chrX 310890 310983 -176663157 + L1MC4 LINE L1 6609 6707 -1335 1754 218 50 0 chrX 311842 312245 -176661895 + L1MA8 LINE L1 5620 6042 -249 703 221 0 0 chrX 312246 312386 -176661754 + FLAM_C SINE Alu 2 141 -2 1685 181 24 0 chrX 312388 312676 -176661464 + AluJo SINE Alu 1 295 -17 547 187 92 19 chrX 312695 312874 -176661266 + L1MA7 LINE L1 6032 6209 -91 402 192 29 19 chrX 312949 313053 -176661087 + L1MA7 LINE L1 6184 6288 -3 2478 81 0 0 chrX 313239 313537 -176660603 + AluSq SINE Alu 1 298 -15 841 167 0 32 chrX 313838 313994 -176660146 - AluJo/FRAM SINE Alu -28 284 134 1302 174 126 7 chrX 313994 314264 -176659876 - AluJo SINE Alu -10 302 1 198 0 0 0 chrX 314482 314504 -176659636 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 1012 118 0 0 chrX 314670 314806 -176659334 + AluSp/q SINE Alu 160 295 -18 21 36 0 0 chrX 315047 315075 -176659065 + AT_rich Low_complexity Low_complexity 1 28 0 1551 202 57 9 chrX 315119 315450 -176658690 + MLT1A1 LTR MaLR 4 350 -15 988 106 0 0 chrX 315451 315583 -176658557 + AluSg/x SINE Alu 168 299 -11 1836 201 39 79 chrX 316456 316861 -176657279 + L1MA8 LINE L1 5620 6040 -251 698 204 0 0 chrX 316861 316993 -176657147 + FLAM_C SINE Alu 1 132 -1 1836 201 39 79 chrX 316993 317013 -176657127 + L1MA8 LINE L1 6040 6059 -232 1573 192 7 0 chrX 317013 317294 -176656846 + AluJo SINE Alu 11 293 -19 1836 201 39 79 chrX 317294 317463 -176656677 + L1MA8 LINE L1 6059 6191 -100 364 182 0 0 chrX 317594 317660 -176656480 + L1MA7 LINE L1 6184 6249 -42 332 94 19 0 chrX 317696 317749 -176656391 + (TA)n Simple_repeat Simple_repeat 1 54 0 2193 99 0 0 chrX 317971 318277 -176655863 + AluSq SINE Alu 1 306 0 1561 168 16 38 chrX 318553 318729 -176655411 - AluJo SINE Alu -4 308 141 1763 183 3 7 chrX 318729 319029 -176655111 - AluJb SINE Alu -13 299 1 1561 168 16 38 chrX 319029 319167 -176654973 - AluJo SINE Alu -171 141 1 808 220 0 24 chrX 319687 319855 -176654285 - AluJb SINE Alu -15 297 134 1511 146 89 14 chrX 319855 320136 -176654004 - AluJo SINE Alu -10 302 1 207 167 0 0 chrX 320331 320373 -176653767 + A-rich Low_complexity Low_complexity 1 42 0 229 180 22 67 chrX 320469 320558 -176653582 + MER58 DNA MER1_type 74 158 -2262 1108 88 0 0 chrX 320558 320695 -176653445 + AluSp/q SINE Alu 160 296 -17 1589 217 23 9 chrX 321002 321347 -176652793 + MLT1A1 LTR MaLR 1 350 -15 875 115 0 8 chrX 321348 321478 -176652662 + AluSg/x SINE Alu 170 298 -14 1943 148 3 22 chrX 323667 323985 -176650155 + AluSq SINE Alu 1 312 -1 2103 151 40 33 chrX 324231 324303 -176649837 + L1PA15 LINE L1 5758 5828 -337 2085 141 3 0 chrX 324303 324608 -176649532 + AluSp SINE Alu 1 306 -7 2103 151 40 33 chrX 324608 324933 -176649207 + L1PA15 LINE L1 5828 6158 -7 1878 150 24 0 chrX 324936 325229 -176648911 + AluSq SINE Alu 1 300 -13 2069 108 49 7 chrX 325839 326127 -176648013 + AluSx SINE Alu 1 300 -12 1818 200 43 86 chrX 328025 328424 -176645716 + L1MA9 LINE L1 5620 6034 -278 677 207 0 15 chrX 328424 328559 -176645581 + FLAM_C SINE Alu 1 133 0 1818 200 43 86 chrX 328559 328582 -176645558 + L1MA9 LINE L1 6034 6056 -256 1665 171 15 0 chrX 328582 328856 -176645284 + AluJo SINE Alu 11 288 -24 1818 200 43 86 chrX 328856 329073 -176645067 + L1MA9 LINE L1 6056 6215 -97 436 187 7 72 chrX 329112 329251 -176644889 + L1MA7 LINE L1 6161 6290 -1 2041 118 24 0 chrX 329435 329724 -176644416 + AluSq SINE Alu 1 296 -17 2193 158 20 27 chrX 329938 330010 -176644130 + L1PA15 LINE L1 5758 5829 -336 2129 125 10 0 chrX 330010 330306 -176643834 + AluSp SINE Alu 1 299 -14 2193 158 20 27 chrX 330306 330637 -176643503 + L1PA15 LINE L1 5829 6158 -7 1777 172 27 0 chrX 330640 330937 -176643203 + AluSq SINE Alu 1 305 -8 2162 113 3 26 chrX 331489 331799 -176642341 + AluSx SINE Alu 2 304 -8 1988 146 0 31 chrX 334252 334573 -176639567 + AluSq SINE Alu 1 311 -2 403 157 0 0 chrX 334797 334867 -176639273 + L1PA13 LINE L1 5759 5828 -335 1995 125 11 4 chrX 334868 335176 -176638964 + AluSp SINE Alu 1 310 0 1900 126 4 0 chrX 335710 335973 -176638167 + AluSx SINE Alu 1 264 -48 296 171 51 8 chrX 336089 336206 -176637934 + (TAGA)n Simple_repeat Simple_repeat 3 124 0 440 241 89 0 chrX 336209 336321 -176637819 - MER20 DNA MER1_type -5 214 93 380 225 81 38 chrX 336435 336595 -176637545 + MER5A DNA MER1_type 23 189 0 783 163 0 23 chrX 337252 337381 -176636759 + FLAM_C SINE Alu 1 126 -17 1660 171 23 33 chrX 337393 337697 -176636443 + AluJo SINE Alu 1 301 -11 22 0 0 0 chrX 337891 337913 -176636227 + AT_rich Low_complexity Low_complexity 1 22 0 2227 105 3 0 chrX 338055 338359 -176635781 - AluSx SINE Alu -7 305 1 391 316 117 10 chrX 338500 338706 -176635434 + MLT1L LTR MaLR 344 571 -44 2256 86 0 7 chrX 338845 339149 -176634991 - AluSx SINE Alu -10 302 1 225 276 23 11 chrX 339150 339237 -176634903 - Charlie1 DNA MER1_type -32 2729 2642 2158 201 81 25 chrX 339271 339899 -176634241 - Charlie1 DNA MER1_type -94 2667 2005 1619 178 0 7 chrX 340003 340301 -176633839 + AluJo SINE Alu 1 296 -16 304 303 124 45 chrX 340302 340480 -176633660 - L2 LINE L2 -15 3298 3107 1519 174 10 34 chrX 341620 341918 -176632222 - AluJo SINE Alu -21 291 1 2214 74 0 3 chrX 341968 342277 -176631863 + AluSx SINE Alu 1 308 0 1794 170 0 7 chrX 342569 342869 -176631271 - AluJo SINE Alu -14 298 1 25 31 0 0 chrX 342932 342964 -176631176 + AT_rich Low_complexity Low_complexity 1 32 0 742 111 0 16 chrX 343853 343979 -176630161 + (TTCC)n Simple_repeat Simple_repeat 1 124 0 1513 170 62 4 chrX 343979 344255 -176629885 - AluJo SINE Alu -20 292 1 1944 142 70 17 chrX 344391 344735 -176629405 - Tigger2a DNA MER2_type -72 362 1 198 0 0 0 chrX 345233 345255 -176628885 + (TG)n Simple_repeat Simple_repeat 2 23 0 241 154 19 39 chrX 346762 346814 -176627326 + L1M4c LINE L1 2440 2490 -3894 307 153 68 0 chrX 346857 346916 -176627224 + L1MA9 LINE L1 6250 6312 0 455 63 0 0 chrX 347035 347098 -176627042 + L1MA9 LINE L1 6250 6312 0 353 204 28 106 chrX 348053 348195 -176625945 - MER96B DNA MER1_type? -285 132 2 206 265 0 0 chrX 349025 349074 -176625066 + T-rich Low_complexity Low_complexity 1 49 0 295 215 0 51 chrX 349077 349156 -176624984 - U13 snRNA snRNA -2 102 28 2123 113 0 13 chrX 349160 349470 -176624670 + AluSx SINE Alu 1 306 -6 544 114 0 0 chrX 349788 349867 -176624273 - MADE1 DNA Mariner 0 80 2 243 0 0 0 chrX 350100 350127 -176624013 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2134 108 0 0 chrX 350134 350422 -176623718 - AluSx SINE Alu -24 288 1 728 181 0 0 chrX 350425 350541 -176623599 - FLAM_A SINE Alu -15 127 12 1380 285 85 21 chrX 351019 351499 -176622641 + MLT1H LTR MaLR 39 549 0 224 366 74 25 chrX 351500 351702 -176622438 + L2 LINE L2 2467 2678 -636 407 241 107 0 chrX 352896 353008 -176621132 - L2 LINE L2 -5 3308 3185 476 298 24 6 chrX 353182 353350 -176620790 + (CA)n Simple_repeat Simple_repeat 2 172 0 205 167 17 17 chrX 353404 353464 -176620676 + (CA)n Simple_repeat Simple_repeat 1 60 0 336 367 6 22 chrX 353497 353677 -176620463 + (CATATA)n Simple_repeat Simple_repeat 3 179 0 344 360 12 6 chrX 353918 354079 -176620061 + (CA)n Simple_repeat Simple_repeat 1 162 0 27 0 0 0 chrX 354689 354716 -176619424 + AT_rich Low_complexity Low_complexity 1 27 0 1471 173 23 27 chrX 354727 355028 -176619112 + AluJo SINE Alu 1 300 -12 2268 157 3 9 chrX 355147 355537 -176618603 + MLT1B LTR MaLR 4 467 0 1267 187 4 0 chrX 355537 355762 -176618378 + MLT1B LTR MaLR 158 383 -7 1877 128 9 31 chrX 356541 356641 -176617499 + AluJo SINE Alu 1 102 -210 3189 158 19 95 chrX 356641 356913 -176617227 + LTR8 LTR ERV1 2 293 -398 1998 138 0 0 chrX 356913 357224 -176616916 + AluSx SINE Alu 1 311 -1 3189 158 19 95 chrX 357224 357698 -176616442 + LTR8 LTR ERV1 293 691 0 1877 128 9 31 chrX 357698 357916 -176616224 + AluJo SINE Alu 102 312 0 2097 216 31 103 chrX 357980 358599 -176615541 + LTR8 LTR ERV1 1 663 -28 1721 176 0 7 chrX 358599 358900 -176615240 + AluJo SINE Alu 1 299 -13 3346 138 17 87 chrX 358908 359049 -176615091 + LTR9 LTR ERV1 1 150 -462 2589 26 3 0 chrX 359049 359356 -176614784 + AluY SINE Alu 1 308 -3 3346 138 17 87 chrX 359356 359872 -176614268 + LTR9 LTR ERV1 150 612 0 2097 216 31 103 chrX 359872 359988 -176614152 + LTR8 LTR ERV1 670 691 0 1830 133 44 3 chrX 360057 360350 -176613790 - AluJb SINE Alu -7 305 1 1715 171 91 23 chrX 360566 360952 -176613188 + LTR49 LTR ERV1 1 412 -183 1561 127 4 8 chrX 360974 361210 -176612930 + L1PA15 LINE L1 5718 5952 -213 1034 161 174 58 chrX 361210 361520 -176612620 + MER4A LTR ERV1 1 346 -318 240 76 0 197 chrX 361525 361591 -176612549 + MER4A LTR ERV1 306 358 -306 371 145 40 13 chrX 361601 361677 -176612463 + MER4C LTR ERV1 279 356 -109 1473 108 0 0 chrX 361757 361969 -176612171 + L1PA15 LINE L1 5949 6160 -5 851 209 25 0 chrX 361969 362132 -176612008 + LTR29 LTR ERV1 456 622 0 225 94 0 0 chrX 362154 362186 -176611954 + (A)n Simple_repeat Simple_repeat 1 32 0 1017 89 0 0 chrX 362250 362385 -176611755 + AluSq/x SINE Alu 1 135 -177 2163 118 3 0 chrX 362385 362691 -176611449 + AluSx SINE Alu 1 307 -5 2087 106 0 52 chrX 362977 363306 -176610834 - AluJo SINE Alu 0 312 1 354 98 0 0 chrX 363446 363497 -176610643 + (TG)n Simple_repeat Simple_repeat 1 51 0 340 283 18 53 chrX 364546 364659 -176609481 - L1MC4 LINE L1 -1339 6703 6595 324 296 104 52 chrX 364653 364923 -176609217 + L1ME4a LINE L1 5684 5967 -154 * 332 179 0 64 chrX 364865 364943 -176609197 - L1MCa LINE L1 -4359 2067 1995 325 222 33 67 chrX 364925 365015 -176609125 + L1MC4 LINE L1 6614 6700 -1342 * 241 213 27 7 chrX 365017 365100 -176609040 + (TA)n Simple_repeat Simple_repeat 1 90 -63 2151 112 0 0 chrX 365100 365403 -176608737 + AluSg1 SINE Alu 1 303 -6 241 213 27 7 chrX 365403 365469 -176608671 + (TA)n Simple_repeat Simple_repeat 90 153 0 307 301 0 43 chrX 365518 365611 -176608529 + L1MC4 LINE L1 6615 6703 -1339 * 308 295 0 42 chrX 365588 365683 -176608457 + L1MC4 LINE L1 6615 6705 -1337 309 231 18 4 chrX 365686 365917 -176608223 + (TA)n Simple_repeat Simple_repeat 1 234 0 388 271 6 35 chrX 365925 366095 -176608045 + (CATATA)n Simple_repeat Simple_repeat 2 166 0 1576 122 52 15 chrX 367881 368152 -176605988 + AluJo SINE Alu 30 310 -2 1476 163 3 91 chrX 368356 368473 -176605667 + AluJb SINE Alu 1 127 -185 312 27 0 0 chrX 368473 368510 -176605630 + (CA)n Simple_repeat Simple_repeat 2 38 0 1476 163 3 91 chrX 368510 368723 -176605417 + AluJb SINE Alu 127 302 -10 1997 119 3 32 chrX 368743 369055 -176605085 - AluSx SINE Alu -9 303 1 315 337 49 33 chrX 369299 369483 -176604657 - L2 LINE L2 -27 3286 3100 1799 106 14 28 chrX 370248 370530 -176603610 - AluSx SINE Alu -23 289 12 2082 124 3 0 chrX 370530 370837 -176603303 - AluSx SINE Alu -4 308 1 1211 186 34 90 chrX 370875 371197 -176602943 + AluJo SINE Alu 1 304 -8 314 302 22 36 chrX 371200 371339 -176602801 + L1MDa LINE L1 2367 2503 -4037 1435 209 0 16 chrX 371806 372112 -176602028 - AluJo SINE Alu -11 301 1 2182 106 0 0 chrX 372190 372483 -176601657 - AluSq SINE Alu -20 293 1 181 196 0 98 chrX 372607 372658 -176601482 + L2 LINE L2 3000 3045 -227 967 137 6 12 chrX 372958 373119 -176601021 - FRAM SINE Alu -16 160 1 2227 103 0 0 chrX 373129 373431 -176600709 - AluSq SINE Alu -11 302 1 705 93 9 0 chrX 373701 373809 -176600331 - MLT1B LTR MaLR -123 267 159 1368 140 5 11 chrX 373810 374045 -176600095 - MLT1B LTR MaLR 0 467 158 2240 155 11 12 chrX 374045 374436 -176599704 - MLT1B LTR MaLR 0 467 1 2154 104 0 26 chrX 374488 374795 -176599345 + AluSx SINE Alu 1 299 -13 3933 111 21 79 chrX 375471 376176 -176597964 + MER4A LTR ERV1 1 664 0 2046 107 43 0 chrX 376456 376755 -176597385 - AluSx SINE Alu 0 312 1 294 50 0 0 chrX 377039 377079 -176597061 + (GTTTG)n Simple_repeat Simple_repeat 2 41 0 1958 127 3 0 chrX 377079 377363 -176596777 - AluSx SINE Alu -27 285 1 304 302 19 9 chrX 377634 377740 -176596400 + CT-rich Low_complexity Low_complexity 2 108 0 2957 177 23 76 chrX 377977 378704 -176595436 + LTR8 LTR ERV1 3 691 0 4653 85 41 0 chrX 379361 379995 -176594145 - PABL_A LTR ERV1 0 660 1 661 111 0 10 chrX 380033 380132 -176594008 + MER4A LTR ERV1 1 98 -566 445 189 7 45 chrX 380132 380280 -176593860 + MER4A LTR ERV1 261 461 -203 1933 115 35 0 chrX 380320 380608 -176593532 - AluSg SINE Alu -12 298 1 23 33 0 0 chrX 380616 380646 -176593494 + AT_rich Low_complexity Low_complexity 1 30 0 227 30 0 30 chrX 380840 380873 -176593267 + (TTTTC)n Simple_repeat Simple_repeat 4 35 0 1047 186 4 75 chrX 381021 381109 -176593031 - MER2 DNA MER2_type -135 210 117 2080 123 0 0 chrX 381109 381409 -176592731 + AluSx SINE Alu 1 300 -12 1047 186 4 75 chrX 381409 381546 -176592594 - MER2 DNA MER2_type -228 117 1 189 0 0 0 chrX 381646 381667 -176592473 + (TTA)n Simple_repeat Simple_repeat 2 22 0 835 154 28 0 chrX 381707 381850 -176592290 - AluSg/x SINE Alu -13 299 153 278 246 67 22 chrX 381851 381985 -176592155 - L1M4 LINE L1 -1031 5115 4976 1918 111 42 7 chrX 381992 382280 -176591860 + AluSx SINE Alu 1 298 -14 1890 138 13 10 chrX 382484 382795 -176591345 - AluJo SINE Alu 0 312 1 1072 54 0 0 chrX 383148 383277 -176590863 - AluY SINE Alu -182 129 1 1069 175 0 0 chrX 383434 383623 -176590517 - AluJb SINE Alu -1 311 123 1522 57 5 14 chrX 384185 384394 -176589746 - AluYa5 SINE Alu -6 305 99 4035 71 18 7 chrX 384394 384946 -176589194 + LTR6B LTR ERV1 1 558 0 855 40 0 0 chrX 384947 385048 -176589092 - AluYa5 SINE Alu -210 101 1 2286 109 0 0 chrX 385070 385382 -176588758 - AluSx SINE Alu 0 312 1 3784 194 19 4 chrX 385415 386168 -176587972 - L1MB5 LINE L1 -6 6168 5405 198 71 0 0 chrX 386719 386747 -176587393 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 1140 114 0 0 chrX 387155 387201 -176586939 + (TTCC)n Simple_repeat Simple_repeat 1 222 0 1140 114 0 0 chrX 387201 387377 -176586763 + (TTCC)n Simple_repeat Simple_repeat 2 177 0 1179 112 0 0 chrX 387395 387574 -176586566 + (TTCC)n Simple_repeat Simple_repeat 1 179 0 415 216 11 28 chrX 387817 387998 -176586142 + CT-rich Low_complexity Low_complexity 3 180 0 23 54 0 0 chrX 388009 388046 -176586094 + AT_rich Low_complexity Low_complexity 1 37 0 2668 204 31 4 chrX 388323 388868 -176585272 - L1MB5 LINE L1 0 6174 5615 1674 190 3 31 chrX 389902 390223 -176583917 + AluJo SINE Alu 1 312 0 1289 191 22 4 chrX 390653 390925 -176583215 - L1MB5 LINE L1 -89 6085 5809 418 247 159 12 chrX 391071 391241 -176582899 + MLT1J2 LTR MaLR 256 450 0 228 378 56 14 chrX 391517 391660 -176582480 - MIR SINE MIR -11 251 103 2266 131 0 0 chrX 392258 392570 -176581570 - AluSx SINE Alu 0 312 1 3015 143 18 64 chrX 393938 394191 -176579949 + MER39B LTR ERV1 2 265 -388 2619 52 0 3 chrX 394191 394498 -176579642 + AluY SINE Alu 1 306 -5 3015 143 18 64 chrX 394498 394617 -176579523 + MER39B LTR ERV1 265 388 -265 2462 73 0 0 chrX 394617 394905 -176579235 + AluSc SINE Alu 1 288 -21 3015 143 18 64 chrX 394905 395186 -176578954 + MER39B LTR ERV1 388 626 -27 396 59 0 0 chrX 395639 395690 -176578450 + (TTCC)n Simple_repeat Simple_repeat 2 52 0 1944 147 0 17 chrX 395690 395990 -176578150 - AluSg SINE Alu -15 295 1 2090 143 0 0 chrX 395990 396297 -176577843 - AluSx SINE Alu -5 307 1 3396 147 11 0 chrX 396615 397158 -176576982 - MER41A LTR ERV1 0 554 6 3172 166 46 88 chrX 397163 397742 -176576398 - LTR39 LTR ERV1 -8 775 238 1960 135 10 10 chrX 397742 398030 -176576110 + AluSx SINE Alu 1 288 -24 3172 166 46 88 chrX 398030 398259 -176575881 - LTR39 LTR ERV1 -545 238 1 334 278 21 10 chrX 399013 399110 -176575030 - MER5A DNA MER1_type -86 103 6 1235 178 9 0 chrX 399119 399349 -176574791 - MLT1B LTR MaLR -1 389 158 1093 175 5 24 chrX 399349 399586 -176574554 - MLT1B LTR MaLR 0 467 159 2178 167 8 13 chrX 399587 399976 -176574164 - MLT1B LTR MaLR 0 390 4 1880 195 4 30 chrX 400005 400299 -176573841 - MLT1B LTR MaLR 0 396 111 2307 69 33 33 chrX 400299 400602 -176573538 - AluY SINE Alu -8 303 1 1880 195 4 30 chrX 400602 400711 -176573429 - MLT1B LTR MaLR -285 111 1 1014 97 0 156 chrX 400864 401050 -176573090 - AluSg/x SINE Alu -18 294 138 737 254 46 0 chrX 401748 401945 -176572195 - MER20 DNA MER1_type 0 219 14 602 149 19 7 chrX 401963 402117 -176572023 + (TAGA)n Simple_repeat Simple_repeat 2 157 0 327 194 37 37 chrX 402128 402236 -176571904 + (TAGA)n Simple_repeat Simple_repeat 4 111 0 859 228 47 9 chrX 402253 402464 -176571676 - MER20 DNA MER1_type 0 219 1 346 194 62 131 chrX 402650 402810 -176571330 + MER5A DNA MER1_type 41 189 0 2348 125 0 0 chrX 403054 403366 -176570774 - AluSx SINE Alu 0 312 1 4046 179 80 9 chrX 403601 404372 -176569768 + LTR1B LTR ERV1 1 826 0 1030 187 41 8 chrX 404458 404704 -176569436 - L1MA4 LINE L1 -1 6299 6046 1036 109 14 0 chrX 405000 405147 -176568993 - L1PA10 LINE L1 0 6168 6020 3654 124 26 0 chrX 405407 405947 -176568193 + MER41A LTR ERV1 1 554 0 270 280 17 68 chrX 406075 406100 -176568040 + MIR SINE MIR 111 136 -126 3485 69 21 5 chrX 406100 406537 -176567603 + MLT2A1 LTR ERVL 1 444 0 270 280 17 68 chrX 406537 406629 -176567511 + MIR SINE MIR 136 222 -40 1545 222 0 10 chrX 406660 406971 -176567169 + AluJo SINE Alu 5 312 0 1464 161 3 89 chrX 406971 407180 -176566960 - MER47A DNA MER2_type -2016 307 136 2018 128 24 14 chrX 407180 407477 -176566663 + AluSq SINE Alu 1 300 -13 1464 161 3 89 chrX 407477 407603 -176566537 - MER47A DNA MER2_type -2187 136 1 2296 113 0 0 chrX 409934 410226 -176563914 - AluSx SINE Alu -18 294 3 504 158 0 0 chrX 410284 410379 -176563761 + (TG)n Simple_repeat Simple_repeat 1 95 0 852 230 0 0 chrX 410492 410688 -176563452 + L1MB5 LINE L1 5810 6005 -169 524 191 0 9 chrX 410691 410796 -176563344 + MLT1C LTR MaLR 1 104 -363 440 80 0 148 chrX 410801 410835 -176563305 + MADE1 DNA Mariner 6 21 -59 2275 118 0 0 chrX 410835 411131 -176563009 - AluSg SINE Alu -14 296 1 440 80 0 148 chrX 411131 411184 -176562956 + MADE1 DNA Mariner 21 80 0 1003 176 131 0 chrX 411186 411407 -176562733 + MLT1C LTR MaLR 105 354 -113 2048 117 0 21 chrX 411408 411690 -176562450 + AluSx SINE Alu 1 276 -36 794 155 8 24 chrX 411690 411951 -176562189 + GA-rich Low_complexity Low_complexity 1 257 0 490 254 0 30 chrX 411951 412085 -176562055 + MLT1C LTR MaLR 338 467 0 597 189 13 75 chrX 412099 412215 -176561925 + L1MB5 LINE L1 6026 6131 -43 1793 115 58 0 chrX 412215 412475 -176561665 + AluSx SINE Alu 22 296 -16 597 189 13 75 chrX 412475 412517 -176561623 + L1MB5 LINE L1 6131 6174 0 694 251 52 22 chrX 412662 412876 -176561264 - MER58B DNA MER1_type -2079 341 71 2095 134 3 6 chrX 412876 413189 -176560951 + AluSx SINE Alu 1 312 0 694 251 52 22 chrX 413189 413258 -176560882 - MER58B DNA MER1_type -2349 71 6 2261 124 0 6 chrX 413653 413967 -176560173 + AluSx SINE Alu 1 312 0 3378 80 0 13 chrX 414174 414624 -176559516 + MLT2A1 LTR ERVL 1 444 0 2180 125 3 28 chrX 415257 415577 -176558563 + AluSx SINE Alu 1 312 0 225 0 0 0 chrX 415595 415620 -176558520 + (CA)n Simple_repeat Simple_repeat 2 26 0 295 294 50 0 chrX 415851 415970 -176558170 + L1M4 LINE L1 3851 3975 -2171 2468 65 0 19 chrX 416038 416346 -176557794 - AluSc SINE Alu -7 302 1 1168 95 0 0 chrX 416740 416888 -176557252 + AluSc SINE Alu 1 148 -161 276 111 0 0 chrX 418369 418414 -176555726 + (A)n Simple_repeat Simple_repeat 1 45 0 2427 90 0 0 chrX 418735 419035 -176555105 + AluSx SINE Alu 1 300 -12 184 271 21 0 chrX 419168 419216 -176554924 - L2 LINE L2 -4 3309 3261 2263 81 0 52 chrX 420933 421260 -176552880 - AluSp SINE Alu 0 313 2 2009 138 0 13 chrX 421302 421607 -176552533 + AluSx SINE Alu 2 302 -10 1725 141 6 72 chrX 421886 422205 -176551935 + AluJo SINE Alu 1 298 -14 1728 95 9 0 chrX 422318 422540 -176551600 - AluSg/x SINE Alu -17 293 70 2375 103 6 3 chrX 423259 423570 -176550570 + AluSx SINE Alu 1 312 0 2337 97 7 3 chrX 423580 423888 -176550252 + AluSc SINE Alu 1 309 0 2348 91 0 0 chrX 424155 424480 -176549660 - AluY SINE Alu 0 325 1 2624 71 0 0 chrX 424824 425135 -176549005 - AluY SINE Alu 0 311 1 530 289 168 43 chrX 426206 426449 -176547691 + HAL1 LINE L1 881 1092 -3314 2397 116 0 0 chrX 426449 426759 -176547381 + AluSx SINE Alu 1 310 -2 530 289 168 43 chrX 426759 426937 -176547203 + HAL1 LINE L1 1092 3227 -1179 578 218 12 18 chrX 427887 428234 -176545906 + GA-rich Low_complexity Low_complexity 1 344 0 376 226 33 13 chrX 428247 428615 -176545525 + GA-rich Low_complexity Low_complexity 1 375 0 383 41 0 0 chrX 428957 429006 -176545134 - MADE1 DNA Mariner -2 78 30 294 77 19 58 chrX 429001 429053 -176545087 + AluJo SINE Alu 93 142 -160 * 301 121 0 121 chrX 429054 429120 -176545020 - AluJo SINE Alu -151 151 94 * 354 80 0 0 chrX 429116 429166 -176544974 + MADE1 DNA Mariner 30 79 -1 2405 79 7 3 chrX 429442 429747 -176544393 - AluSx SINE Alu -6 306 1 1606 111 0 9 chrX 430095 430312 -176543828 - AluSg/x SINE Alu 0 309 95 21 0 0 0 chrX 430559 430580 -176543560 + AT_rich Low_complexity Low_complexity 1 21 0 2349 101 0 0 chrX 430583 430879 -176543261 + AluY SINE Alu 1 296 -15 1914 161 0 3 chrX 430883 431182 -176542958 - AluJo SINE Alu -12 300 3 923 127 11 14 chrX 431439 431730 -176542410 + THE1C LTR MaLR 1 375 0 2118 110 20 17 chrX 431919 432220 -176541920 + AluSx SINE Alu 1 302 -10 2255 109 30 0 chrX 432559 432861 -176541279 + AluSx SINE Alu 1 311 -1 2317 97 3 0 chrX 433278 433576 -176540564 + AluSq SINE Alu 1 299 -14 2498 72 0 10 chrX 433896 434202 -176539938 - AluY SINE Alu -8 303 1 2085 118 3 0 chrX 435142 435448 -176538692 + AluSx SINE Alu 1 312 0 22 0 0 0 chrX 435623 435645 -176538495 + AT_rich Low_complexity Low_complexity 1 22 0 1674 192 3 10 chrX 435650 435941 -176538199 - AluJo SINE Alu -23 289 1 2127 105 0 33 chrX 435974 436142 -176537998 - AluSx SINE Alu -17 295 140 2115 124 24 0 chrX 436142 436432 -176537708 - AluSx SINE Alu -15 297 1 2127 105 0 33 chrX 436432 436568 -176537572 - AluSx SINE Alu -172 140 1 546 155 0 0 chrX 437014 437111 -176537029 + CT-rich Low_complexity Low_complexity 4 100 0 1465 118 0 15 chrX 438512 438736 -176535404 + AluSq SINE Alu 82 302 0 22 0 0 0 chrX 438912 438934 -176535206 + AT_rich Low_complexity Low_complexity 1 22 0 779 333 79 26 chrX 438996 439459 -176534681 + L1ME4a LINE L1 5481 5973 -148 1701 193 0 37 chrX 439459 439781 -176534359 + AluJo SINE Alu 1 310 -2 779 333 79 26 chrX 439781 439813 -176534327 + L1ME4a LINE L1 5973 6002 -119 2347 114 0 3 chrX 440131 440439 -176533701 + AluSx SINE Alu 3 309 -3 674 209 40 57 chrX 440922 441099 -176533041 - MER45A DNA AcHobo -4 174 1 209 232 20 71 chrX 441577 441676 -176532464 + GA-rich Low_complexity Low_complexity 2 95 0 2558 74 0 3 chrX 442386 442696 -176531444 + AluY SINE Alu 1 309 -2 1994 139 36 0 chrX 442824 443126 -176531014 + AluSq SINE Alu 1 313 0 2256 113 0 3 chrX 443688 443990 -176530150 - AluSx SINE Alu -11 301 1 1212 154 45 136 chrX 444388 444718 -176529422 + AluJo SINE Alu 1 300 -2 2350 103 0 0 chrX 444738 445038 -176529102 + AluSg SINE Alu 1 300 -10 775 231 138 7 chrX 445048 445353 -176528787 + MLT1C LTR MaLR 1 361 -144 1317 254 58 27 chrX 445368 445816 -176528324 + MLT1C LTR MaLR 6 467 0 650 226 6 19 chrX 446202 446361 -176527779 + Tigger1 DNA MER2_type 1 157 -2261 * 798 155 139 0 chrX 446354 446541 -176527599 + Tigger1 DNA MER2_type 2206 2418 0 21 36 0 0 chrX 446668 446696 -176527444 + AT_rich Low_complexity Low_complexity 1 28 0 275 243 108 0 chrX 446699 446810 -176527330 + MER69 DNA AcHobo 2313 2435 -91 365 274 30 7 chrX 447501 447636 -176526504 + (TG)n Simple_repeat Simple_repeat 2 139 0 512 249 17 22 chrX 447647 447828 -176526312 + (TG)n Simple_repeat Simple_repeat 1 180 0 207 216 21 21 chrX 447830 447927 -176526213 + (TATG)n Simple_repeat Simple_repeat 4 100 0 * 433 232 0 11 chrX 447914 448095 -176526045 + (TG)n Simple_repeat Simple_repeat 2 180 0 450 326 6 6 chrX 448132 448310 -176525830 + (TG)n Simple_repeat Simple_repeat 2 179 0 2240 163 21 74 chrX 448645 449003 -176525137 - L1MA8 LINE L1 -111 6180 5805 2228 99 17 7 chrX 449003 449297 -176524843 - AluSx SINE Alu -15 297 1 2240 163 21 74 chrX 449297 449361 -176524779 - L1MA8 LINE L1 -486 5805 5739 358 247 0 0 chrX 449361 449454 -176524686 - L1MB8 LINE L1 -3 6175 6083 2240 163 21 74 chrX 449454 449587 -176524553 - L1MA8 LINE L1 -552 5739 5653 319 213 11 85 chrX 449606 449700 -176524440 - L1MC4 LINE L1 -1339 6703 6617 306 227 10 82 chrX 449719 449816 -176524324 - L1MC4 LINE L1 -1339 6703 6614 300 239 44 62 chrX 449752 449865 -176524275 + L1MC3 LINE L1 6569 6679 -1106 * 2353 99 0 7 chrX 449884 450187 -176523953 + AluSg SINE Alu 1 301 -9 422 363 0 11 chrX 451298 451480 -176522660 + (TG)n Simple_repeat Simple_repeat 1 180 0 261 296 52 23 chrX 451495 451667 -176522473 + (CATG)n Simple_repeat Simple_repeat 3 179 0 * 337 368 0 16 chrX 451577 451810 -176522330 + (TG)n Simple_repeat Simple_repeat 1 229 0 184 111 44 22 chrX 451810 451855 -176522285 + (CATG)n Simple_repeat Simple_repeat 3 48 0 1955 163 0 7 chrX 453684 454004 -176520136 - AluSx SINE Alu 0 312 4 1325 89 6 0 chrX 454056 454224 -176519916 + AluSg/x SINE Alu 122 290 -22 25 0 0 0 chrX 454224 454249 -176519891 + AT_rich Low_complexity Low_complexity 1 25 0 2415 77 0 3 chrX 454666 454977 -176519163 - AluY SINE Alu -1 310 1 859 235 46 42 chrX 455305 455590 -176518550 + L1MA8 LINE L1 6004 6289 -2 1866 159 0 3 chrX 456040 456330 -176517810 + AluJb SINE Alu 1 289 -23 1992 153 36 0 chrX 456332 456633 -176517507 + AluSx SINE Alu 1 312 0 257 283 35 55 chrX 456907 457052 -176517088 + MER5A DNA MER1_type 22 163 -26 414 0 0 0 chrX 457403 457449 -176516691 + (CA)n Simple_repeat Simple_repeat 2 47 0 2103 261 45 24 chrX 457475 457966 -176516174 + MER82 DNA MER2_type 9 488 -165 2285 91 3 23 chrX 457966 458274 -176515866 + AluSx SINE Alu 1 302 -10 2103 261 45 24 chrX 458274 458314 -176515826 + MER82 DNA MER2_type 488 526 -127 896 153 0 13 chrX 458314 458471 -176515669 + L1PA14 LINE L1 6007 6161 0 2103 261 45 24 chrX 458471 458566 -176515574 + MER82 DNA MER2_type 526 649 -4 348 304 0 65 chrX 458776 458914 -176515226 + L2 LINE L2 2951 3079 -193 520 247 96 14 chrX 458980 459126 -176515014 + MER5B DNA MER1_type 6 163 -15 533 244 0 6 chrX 459761 459933 -176514207 + (TGGG)n Simple_repeat Simple_repeat 2 172 0 894 208 0 6 chrX 459950 460270 -176513870 + (TGGA)n Simple_repeat Simple_repeat 1 317 0 527 195 18 6 chrX 460284 460453 -176513687 + (TGGA)n Simple_repeat Simple_repeat 3 173 0 954 156 0 0 chrX 460469 460720 -176513420 + (TGGA)n Simple_repeat Simple_repeat 1 251 0 218 345 86 0 chrX 461005 461121 -176513019 + MIR SINE MIR 66 191 -71 1467 197 52 7 chrX 461298 461587 -176512553 + AluSx SINE Alu 1 302 -10 2272 118 0 0 chrX 461587 461892 -176512248 + AluSg SINE Alu 1 305 -5 318 87 0 0 chrX 461895 461941 -176512199 + (GAAAA)n Simple_repeat Simple_repeat 5 50 0 1093 176 0 11 chrX 461943 462131 -176512009 + AluJo SINE Alu 118 303 -9 1244 208 0 0 chrX 462371 462578 -176511562 + AluJo SINE Alu 84 290 -22 1741 172 57 7 chrX 462586 462883 -176511257 + AluJo SINE Alu 1 312 0 2096 101 0 7 chrX 464386 464664 -176509476 + AluSq SINE Alu 35 310 -3 1442 206 77 3 chrX 464748 465112 -176509028 + MER34B LTR ERV1 148 538 -27 2046 136 0 0 chrX 465131 465417 -176508723 + AluSx SINE Alu 11 296 -16 1192 185 20 0 chrX 465428 465628 -176508512 + AluJo SINE Alu 86 289 -23 1316 175 5 0 chrX 465635 465841 -176508299 + AluSg/x SINE Alu 86 292 -20 2093 124 0 7 chrX 466287 466586 -176507554 - AluSx SINE Alu -15 297 1 602 271 15 20 chrX 467038 467241 -176506899 - MER20 DNA MER1_type 0 219 18 408 103 10 113 chrX 467834 467931 -176506209 + AluSc SINE Alu 221 307 -2 22 35 0 0 chrX 469836 469865 -176504275 + GC_rich Low_complexity Low_complexity 1 29 0 2316 97 7 0 chrX 471053 471361 -176502779 + AluSx SINE Alu 1 310 -2 2402 149 36 24 chrX 471363 471943 -176502197 - MER4E LTR ERV1 -7 759 19 1888 133 0 14 chrX 471943 472222 -176501918 - AluSx SINE Alu -1 311 37 2402 149 36 24 chrX 472222 472242 -176501898 - MER4E LTR ERV1 -747 19 1 4324 47 4 25 chrX 472335 472371 -176501769 - L1PA7 LINE L1 -2 6152 6117 2584 50 0 10 chrX 472371 472672 -176501468 + AluY SINE Alu 1 298 -13 4324 47 4 25 chrX 472672 473190 -176500950 - L1PA7 LINE L1 -37 6117 5610 1947 148 34 0 chrX 474520 474818 -176499322 - AluSq SINE Alu -5 308 1 450 176 0 0 chrX 474927 475012 -176499128 + (CA)n Simple_repeat Simple_repeat 1 85 0 2500 103 0 0 chrX 475261 475573 -176498567 + AluSx SINE Alu 1 312 0 1925 139 43 10 chrX 475603 475904 -176498236 + AluSx SINE Alu 1 311 -1 892 118 0 7 chrX 475973 476109 -176498031 + MSTA LTR MaLR 1 135 -293 391 106 152 0 chrX 476109 476175 -176497965 + MSTA LTR MaLR 353 428 0 1241 81 81 11 chrX 476175 476234 -176497906 + Charlie3 DNA MER1_type 2509 2562 -144 261 0 0 0 chrX 476234 476263 -176497877 + (TAA)n Simple_repeat Simple_repeat 3 31 0 1241 81 81 11 chrX 476263 476388 -176497752 + Charlie3 DNA MER1_type 2562 2706 0 306 298 48 0 chrX 476421 476505 -176497635 + L1MC3 LINE L1 7163 7250 -535 726 172 0 29 chrX 476510 476756 -176497384 + (TGGA)n Simple_repeat Simple_repeat 1 238 0 2309 95 0 10 chrX 476823 477127 -176497013 - AluY SINE Alu -10 301 1 2498 87 3 0 chrX 477127 477436 -176496704 - AluSp SINE Alu -2 311 1 752 203 0 0 chrX 477793 477926 -176496214 - FLAM_A SINE Alu 0 133 1 1242 168 33 5 chrX 477969 478183 -176495957 - AluJo SINE Alu -92 220 1 1323 217 91 29 chrX 478620 478970 -176495170 + MLT1A2 LTR MaLR 1 372 -2 226 267 13 40 chrX 479108 479183 -176494957 + MLT1J2 LTR MaLR 58 130 -320 383 299 7 95 chrX 479190 479494 -176494646 + MLT1J LTR MaLR 171 447 -64 624 263 10 0 chrX 479690 479986 -176494154 + (TGGA)n Simple_repeat Simple_repeat 1 299 0 801 213 0 0 chrX 480036 480311 -176493829 + (TGGA)n Simple_repeat Simple_repeat 1 275 0 630 208 0 0 chrX 480332 480486 -176493654 + (TGGA)n Simple_repeat Simple_repeat 4 157 0 231 125 0 0 chrX 481467 481507 -176492633 + (CA)n Simple_repeat Simple_repeat 1 40 0 2264 105 3 3 chrX 481632 481936 -176492204 + AluSg SINE Alu 1 304 -6 593 283 112 0 chrX 481944 482131 -176492009 - MLT1G1 LTR MaLR -381 214 7 180 355 0 0 chrX 482491 482553 -176491587 - L2 LINE L2 -218 3054 2993 1371 192 12 0 chrX 482692 482932 -176491208 + AluJo SINE Alu 54 296 -16 1035 261 94 12 chrX 482950 483280 -176490860 + MLT1H LTR MaLR 185 541 -8 239 229 0 0 chrX 484071 484119 -176490021 + (TG)n Simple_repeat Simple_repeat 1 48 0 2242 109 13 0 chrX 484263 484565 -176489575 + AluSx SINE Alu 1 306 -6 2463 96 0 0 chrX 485160 485472 -176488668 + AluSx SINE Alu 1 312 0 1919 141 12 6 chrX 485617 485936 -176488204 + L1PB2 LINE L1 5521 5841 -310 1695 119 4 8 chrX 486046 486297 -176487843 - L1P4 LINE L1 -575 5593 5344 353 221 0 0 chrX 486298 486375 -176487765 - MER4D LTR ERV1 -512 360 284 1949 145 20 7 chrX 486379 486683 -176487457 - AluSx SINE Alu -4 308 1 892 126 33 44 chrX 486687 486870 -176487270 - Tigger7 DNA MER2_type -92 2495 2315 1696 153 78 54 chrX 486926 486993 -176487147 - MSTA LTR MaLR -5 423 359 2120 85 11 7 chrX 486993 487274 -176486866 + AluSx SINE Alu 1 282 -30 180 0 0 0 chrX 487277 487297 -176486843 + (CA)n Simple_repeat Simple_repeat 1 20 0 1696 153 78 54 chrX 487297 487597 -176486543 - MSTA LTR MaLR -70 358 43 2063 96 0 7 chrX 487931 488203 -176485937 + AluSx SINE Alu 43 312 0 719 84 0 0 chrX 488642 488737 -176485403 + AluSc SINE Alu 2 96 -213 1949 153 0 25 chrX 489174 489494 -176484646 - AluSx SINE Alu 0 312 1 644 256 17 0 chrX 489563 489735 -176484405 + MER45A DNA AcHobo 1 175 -3 846 119 0 0 chrX 490753 490871 -176483269 - AluSq SINE Alu -155 158 41 2173 136 3 0 chrX 491201 491510 -176482630 - AluSx SINE Alu -2 310 1 310 278 41 0 chrX 492822 492919 -176481221 + MER34C LTR ERV1 1 101 -484 319 198 33 22 chrX 493015 493106 -176481034 - MER90 LTR ERV1 -477 98 7 742 245 58 5 chrX 493641 493849 -176480291 - MLT1D LTR MaLR -286 219 1 198 318 37 28 chrX 494620 494727 -176479413 + L2 LINE L2 2930 3037 -235 192 77 0 0 chrX 495153 495179 -176478961 + (GA)n Simple_repeat Simple_repeat 1 26 0 2287 95 7 0 chrX 496261 496555 -176477585 + AluSg SINE Alu 1 296 -14 2125 109 6 40 chrX 496795 497116 -176477024 + AluSx SINE Alu 1 310 -2 331 328 85 17 chrX 497241 497595 -176476545 + L1ME4a LINE L1 5491 5868 -253 646 274 12 12 chrX 498366 498534 -176475606 - MER45A DNA AcHobo -3 175 8 2314 94 0 10 chrX 499342 499640 -176474500 - AluSg SINE Alu -15 295 1 22 70 0 0 chrX 499758 499801 -176474339 + AT_rich Low_complexity Low_complexity 1 43 0 207 0 0 0 chrX 500181 500204 -176473936 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 29 47 0 0 chrX 501007 501050 -176473090 + AT_rich Low_complexity Low_complexity 1 43 0 2198 90 3 21 chrX 501126 501450 -176472690 + AluSx SINE Alu 1 319 0 537 328 6 0 chrX 502312 502486 -176471654 - MER45A DNA AcHobo -3 175 1 254 132 19 0 chrX 503003 503056 -176471084 + GA-rich Low_complexity Low_complexity 1 54 0 228 67 0 0 chrX 503733 503763 -176470377 + (CG)n Simple_repeat Simple_repeat 2 31 0 * 330 26 0 0 chrX 503762 503801 -176470339 + (CA)n Simple_repeat Simple_repeat 1 39 0 2282 93 3 0 chrX 503904 504194 -176469946 - AluSc SINE Alu -10 299 9 2429 81 0 7 chrX 504894 505203 -176468937 - AluSc SINE Alu -2 307 1 2303 100 0 3 chrX 505876 506177 -176467963 + AluSx SINE Alu 1 300 -12 303 256 53 15 chrX 506177 506310 -176467830 - MER33 DNA MER1_type -19 344 207 42 77 0 0 chrX 506310 506401 -176467739 + AT_rich Low_complexity Low_complexity 1 91 0 267 284 11 17 chrX 506464 506640 -176467500 + (TA)n Simple_repeat Simple_repeat 2 176 0 31 68 0 0 chrX 506659 506718 -176467422 + AT_rich Low_complexity Low_complexity 1 59 0 384 227 34 17 chrX 506745 506831 -176467309 + (TA)n Simple_repeat Simple_repeat 1 84 -95 2289 105 10 0 chrX 506831 507125 -176467015 + AluSp SINE Alu 1 297 -16 384 227 34 17 chrX 507125 507214 -176466926 + (TA)n Simple_repeat Simple_repeat 84 179 0 266 286 19 0 chrX 507242 507403 -176466737 + (TA)n Simple_repeat Simple_repeat 2 165 0 495 185 82 86 chrX 507456 507638 -176466502 - MER33 DNA MER1_type -2353 232 50 2277 187 9 12 chrX 507638 508065 -176466075 + MSTB LTR MaLR 1 426 0 495 185 82 86 chrX 508065 508114 -176466026 - MER33 DNA MER1_type -2535 50 2 2415 77 0 0 chrX 508503 508800 -176465340 + AluY SINE Alu 1 297 -14 625 161 100 0 chrX 508884 509014 -176465126 - L1MC3 LINE L1 -195 7590 7448 306 121 35 17 chrX 509041 509099 -176465041 - MSTB1 LTR MaLR -43 389 331 720 114 9 0 chrX 509193 509298 -176464842 - MSTB1 LTR MaLR 0 432 327 1551 180 200 130 chrX 509300 509555 -176464585 - L1MC3 LINE L1 -340 7445 7209 240 284 12 25 chrX 509555 509636 -176464504 - MLT1F1 LTR MaLR -453 114 35 1551 180 200 130 chrX 509636 509985 -176464155 - L1MC3 LINE L1 -576 7209 6713 1266 233 38 24 chrX 510019 510311 -176463829 + AluJo SINE Alu 1 296 -6 471 214 0 0 chrX 510314 510398 -176463742 + AluJo/FRAM SINE Alu 207 290 -22 243 88 0 0 chrX 511922 511956 -176462184 + (TTA)n Simple_repeat Simple_repeat 1 34 0 2286 75 0 4 chrX 511956 512237 -176461903 - AluSx SINE Alu -32 280 1 2257 84 3 32 chrX 512662 512972 -176461168 - AluSx SINE Alu -7 305 5 1568 174 0 30 chrX 513219 513350 -176460790 + AluJb SINE Alu 6 126 -186 2220 111 0 7 chrX 513350 513657 -176460483 + AluSx SINE Alu 2 306 -6 1568 174 0 30 chrX 513657 513795 -176460345 + AluJb SINE Alu 126 267 -45 230 326 22 58 chrX 514081 514219 -176459921 + MIR SINE MIR 34 166 -96 2164 113 0 35 chrX 514264 514582 -176459558 + AluSx SINE Alu 1 307 -5 2748 86 23 16 chrX 514968 515354 -176458786 + MLT2A1 LTR ERVL 1 389 -55 192 77 0 0 chrX 515354 515380 -176458760 + (TA)n Simple_repeat Simple_repeat 1 26 0 1629 164 32 11 chrX 515750 516061 -176458079 - AluJo SINE Alu 0 317 1 2316 95 3 0 chrX 516276 516572 -176457568 + AluSx SINE Alu 1 297 -15 210 91 0 0 chrX 516588 516621 -176457519 + (CA)n Simple_repeat Simple_repeat 2 34 0 183 258 61 0 chrX 517132 517198 -176456942 - MIR SINE MIR -117 145 76 496 248 10 2 chrX 517330 517744 -176456396 + (TCCA)n Simple_repeat Simple_repeat 1 417 0 350 281 0 6 chrX 517768 517939 -176456201 + (TCCA)n Simple_repeat Simple_repeat 4 173 0 563 227 8 0 chrX 519075 519203 -176454937 - AluJb SINE Alu -7 305 177 627 144 8 23 chrX 519230 519362 -176454778 + CT-rich Low_complexity Low_complexity 3 132 0 884 145 0 0 chrX 519364 519495 -176454645 - FLAM_C SINE Alu -2 131 1 283 287 53 0 chrX 519894 519988 -176454152 + MER5A DNA MER1_type 11 109 -80 2285 105 0 0 chrX 521072 521366 -176452774 + AluSp SINE Alu 2 295 -18 208 361 17 17 chrX 521671 521790 -176452350 - MIR SINE MIR -70 138 20 264 174 43 0 chrX 521843 521889 -176452251 + MLT1D LTR MaLR 1 48 -457 334 125 42 0 chrX 521892 521940 -176452200 + MLT1D LTR MaLR 1 50 -455 298 106 64 0 chrX 521941 521988 -176452152 + MLT1D LTR MaLR 1 50 -455 360 102 20 0 chrX 521989 522038 -176452102 + MLT1D LTR MaLR 1 50 -455 312 143 20 0 chrX 522039 522088 -176452052 + MLT1D LTR MaLR 1 50 -455 325 122 20 0 chrX 522089 522138 -176452002 + MLT1D LTR MaLR 1 50 -455 349 102 20 0 chrX 522139 522188 -176451952 + MLT1D LTR MaLR 1 50 -455 336 104 42 0 chrX 522189 522237 -176451903 + MLT1D LTR MaLR 1 50 -455 2158 198 26 40 chrX 522238 522746 -176451394 + MLT1D LTR MaLR 1 622 -4 2845 62 3 3 chrX 522772 523127 -176451013 + THE1A LTR MaLR 1 355 0 3100 109 2 5 chrX 523132 523574 -176450566 + MER41A LTR ERV1 1 441 -113 2312 85 3 0 chrX 523574 523868 -176450272 - AluSc SINE Alu -9 300 6 2205 119 0 10 chrX 524177 524489 -176449651 + AluSx SINE Alu 4 312 0 289 279 45 52 chrX 524791 524945 -176449195 - MER103 DNA DNA 0 166 14 1868 161 3 10 chrX 525237 525542 -176448598 - AluJb SINE Alu -9 303 1 1784 115 4 4 chrX 525677 525929 -176448211 + AluSq SINE Alu 1 252 -61 2049 116 20 0 chrX 527555 527847 -176446293 + AluSx SINE Alu 1 298 -14 2154 105 0 10 chrX 527857 528151 -176445989 + AluSx SINE Alu 7 297 -15 2382 95 0 0 chrX 528727 529023 -176445117 + AluSg SINE Alu 1 296 -14 422 291 10 10 chrX 529023 529126 -176445014 - MLT1E LTR MaLR -489 104 2 1993 139 3 3 chrX 529365 529666 -176444474 - AluSx SINE Alu -11 301 1 467 315 12 6 chrX 531067 531232 -176442908 - MLT1G1 LTR MaLR -207 388 223 360 169 0 0 chrX 531444 531509 -176442631 + Alu SINE Alu 234 298 -3 236 308 0 0 chrX 531509 531574 -176442566 - L2 LINE L2 -18 3295 3231 204 267 0 0 chrX 531609 531669 -176442471 + (TG)n Simple_repeat Simple_repeat 1 60 0 1991 141 0 33 chrX 531718 532017 -176442123 - AluJo SINE Alu -23 289 1 2282 108 3 0 chrX 532088 532384 -176441756 - AluSx SINE Alu -15 297 1 2346 103 0 10 chrX 532721 533023 -176441117 - AluSg SINE Alu -11 299 1 1844 162 8 22 chrX 533164 533507 -176440633 - L1PA16 LINE L1 0 6166 5827 2160 131 3 3 chrX 533507 533813 -176440327 - AluSc SINE Alu -3 306 1 1844 162 8 22 chrX 533813 533827 -176440313 - L1PA16 LINE L1 -339 5827 5814 1023 97 28 7 chrX 533827 533972 -176440168 - AluSc SINE Alu -30 279 132 1173 132 0 16 chrX 533972 534154 -176439986 - AluSg/x SINE Alu 0 310 132 1110 430 35 3 chrX 534154 534438 -176439702 - AluSx SINE Alu -9 293 1 2168 104 11 0 chrX 534701 534988 -176439152 + AluSq SINE Alu 1 290 -23 261 0 0 0 chrX 535220 535249 -176438891 + (T)n Simple_repeat Simple_repeat 1 29 0 1909 127 9 72 chrX 535361 535503 -176438637 + AluJb SINE Alu 1 150 -162 2108 135 6 6 chrX 535503 535815 -176438325 + AluSx SINE Alu 1 312 0 1909 127 9 72 chrX 535815 536004 -176438136 + AluJb SINE Alu 150 311 -1 2251 91 0 10 chrX 536080 536378 -176437762 + AluSx SINE Alu 1 295 -17 741 161 8 16 chrX 536462 536586 -176437554 + AluJo SINE Alu 15 137 -175 1565 197 4 14 chrX 536588 536867 -176437273 + AluJo SINE Alu 5 280 -32 366 80 0 0 chrX 536869 536919 -176437221 + (TAA)n Simple_repeat Simple_repeat 1 50 0 230 75 0 25 chrX 536920 536960 -176437180 + MADE1 DNA Mariner 5 43 -37 2385 92 0 13 chrX 537154 537468 -176436672 - AluSg SINE Alu 0 310 1 1800 178 0 3 chrX 537577 537899 -176436241 - AluJo SINE Alu 0 321 1 1244 211 42 131 chrX 537913 538514 -176435626 - L1MD2 LINE L1 0 6359 5813 294 287 49 16 chrX 538564 538686 -176435454 - L1MD2 LINE L1 -2083 5725 5600 1783 161 3 20 chrX 538689 538994 -176435146 - AluJo SINE Alu -12 300 1 324 299 125 7 chrX 539121 539265 -176434875 - L1MD2 LINE L1 -2329 5479 5319 2492 54 0 14 chrX 539303 539599 -176434541 + AluY SINE Alu 1 292 -19 2750 96 13 0 chrX 539609 539986 -176434154 + L1PA8 LINE L1 5787 6168 -4 626 297 138 47 chrX 539986 540231 -176433909 - L1MC/D LINE L1 -770 5376 5155 1587 163 36 33 chrX 540231 540537 -176433603 - AluJo SINE Alu -5 307 1 626 297 138 47 chrX 540537 541109 -176433031 - L1MC/D LINE L1 -991 5155 4549 26 0 0 0 chrX 541151 541177 -176432963 + AT_rich Low_complexity Low_complexity 1 26 0 2295 82 0 10 chrX 541177 541470 -176432670 - AluSg SINE Alu -20 290 1 2167 161 21 0 chrX 541470 541848 -176432292 - L1PA16 LINE L1 -11 6155 5770 1000 139 6 6 chrX 541855 542020 -176432120 + L1PA16 LINE L1 5608 5772 -394 2660 55 0 0 chrX 542028 542337 -176431803 - AluY SINE Alu -2 309 1 1825 155 7 39 chrX 542340 542650 -176431490 - AluJb SINE Alu -12 300 1 363 272 43 27 chrX 542652 542836 -176431304 - LTR16B LTR ERVL -8 456 270 472 145 0 0 chrX 543106 543182 -176430958 - AluJ/FRAM SINE Alu -14 298 223 638 327 53 56 chrX 543283 543643 -176430497 - L1MC/D LINE L1 -1675 4471 4111 1685 157 3 28 chrX 543643 543929 -176430211 + AluJo SINE Alu 18 296 -16 638 327 53 56 chrX 543929 544036 -176430104 - L1MC/D LINE L1 -2035 4111 4005 219 170 0 0 chrX 544041 544088 -176430052 + (CA)n Simple_repeat Simple_repeat 2 48 0 341 96 0 82 chrX 544463 544536 -176429604 - MLT1A1 LTR MaLR -276 89 23 4032 52 4 4 chrX 544597 545097 -176429043 - L1PA7 LINE L1 -1 6153 5654 2171 197 5 2 chrX 545115 545531 -176428609 - L1PB4 LINE L1 -2 6154 5738 1040 177 8 6 chrX 546515 546790 -176427350 + GA-rich Low_complexity Low_complexity 1 457 -76 1040 128 6 0 chrX 546790 546969 -176427171 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 1040 177 8 6 chrX 546969 547047 -176427093 + GA-rich Low_complexity Low_complexity 457 533 0 2414 221 55 2 chrX 547165 547694 -176426446 + MER74A LTR ERVL 1 557 -1 2021 150 0 13 chrX 548209 548522 -176425618 - AluSx SINE Alu -2 310 2 650 222 7 22 chrX 548763 549040 -176425100 - MLT1B LTR MaLR -2 465 170 1856 161 53 9 chrX 549044 549418 -176424722 - MLT1B LTR MaLR 0 396 1 823 192 7 7 chrX 549783 549929 -176424211 - FRAM SINE Alu -16 150 5 1142 139 6 0 chrX 549937 550110 -176424030 - AluSg SINE Alu 0 312 139 1203 83 0 0 chrX 550230 550375 -176423765 - AluSg SINE Alu -165 145 1 230 67 0 0 chrX 550390 550420 -176423720 - L1M LINE L1 -915 5397 5368 23 0 0 0 chrX 550464 550487 -176423653 + AT_rich Low_complexity Low_complexity 1 23 0 1740 178 30 0 chrX 550565 550863 -176423277 - AluJb SINE Alu -5 307 1 2253 88 0 3 chrX 550895 551180 -176422960 - AluSg SINE Alu -26 284 1 2539 185 15 2 chrX 551503 551984 -176422156 - LTR15 LTR ERV1 -6 487 1 432 333 46 35 chrX 552067 552241 -176421899 + MER5A DNA MER1_type 1 176 -13 2345 100 3 3 chrX 552512 552813 -176421327 - AluSq SINE Alu -12 301 1 1705 118 30 43 chrX 553055 553206 -176420934 + L1MA3 LINE L1 5988 6135 -170 2313 103 17 0 chrX 553206 553507 -176420633 + AluSx SINE Alu 2 307 -5 1705 118 30 43 chrX 553507 553659 -176420481 + L1MA3 LINE L1 6135 6287 -18 217 321 0 29 chrX 555564 555701 -176418439 + (TTAGG)n Simple_repeat Simple_repeat 3 135 0 206 264 0 35 chrX 555809 555896 -176418244 + (TTAAG)n Simple_repeat Simple_repeat 4 87 0 * 209 248 57 19 chrX 555836 555941 -176418199 + (AGTTG)n Simple_repeat Simple_repeat 1 109 0 276 314 0 31 chrX 556186 556345 -176417795 + (TTAGG)n Simple_repeat Simple_repeat 2 155 0 2825 176 16 69 chrX 556539 556892 -176417248 - L1MA8 LINE L1 -3 6288 5993 2442 104 0 0 chrX 556892 557201 -176416939 - AluSc SINE Alu 0 309 1 2825 176 16 69 chrX 557201 557589 -176416551 - L1MA8 LINE L1 -298 5993 5586 849 142 0 0 chrX 557732 557852 -176416288 + AluSq/x SINE Alu 1 120 -192 1098 133 0 0 chrX 558350 558538 -176415602 - AluSg/x SINE Alu 0 319 132 2132 114 0 41 chrX 558539 558854 -176415286 - AluSg SINE Alu -8 302 1 2055 116 3 7 chrX 560085 560401 -176413739 + AluSx SINE Alu 1 315 0 2018 96 0 3 chrX 560559 560841 -176413299 + L1PA7 LINE L1 5874 6154 0 1694 91 0 0 chrX 561742 561951 -176412189 + AluSg SINE Alu 1 209 -101 277 102 0 0 chrX 561953 562002 -176412138 + AluSg SINE Alu 260 308 0 21 0 0 0 chrX 562155 562176 -176411964 + AT_rich Low_complexity Low_complexity 1 21 0 3306 190 9 31 chrX 562176 562414 -176411726 - L1PB4 LINE L1 -1 6155 5913 2352 203 54 30 chrX 562414 562911 -176411229 + LTR22 LTR ERVK 1 509 0 3306 190 9 31 chrX 562911 563351 -176410789 - L1PB4 LINE L1 -243 5913 5492 2212 94 3 3 chrX 563381 563669 -176410471 + AluSx SINE Alu 7 294 -18 1586 129 40 66 chrX 563673 563810 -176410330 - THE1B LTR MaLR -69 295 156 2266 97 3 3 chrX 563810 564134 -176410006 + AluSq SINE Alu 2 313 0 1586 129 40 66 chrX 564134 564299 -176409841 - THE1B LTR MaLR -208 156 1 482 217 17 26 chrX 564301 564416 -176409724 + MLT1E2 LTR MaLR 495 608 -18 182 206 29 0 chrX 564908 564942 -176409198 + MIR SINE MIR 118 152 -56 2366 92 3 0 chrX 564959 565252 -176408888 - AluSp SINE Alu -17 296 3 32 0 0 0 chrX 565262 565294 -176408846 + AT_rich Low_complexity Low_complexity 1 32 0 694 181 9 0 chrX 565294 565410 -176408730 - FLAM_C SINE Alu -25 118 2 218 200 40 0 chrX 565534 565584 -176408556 + MIR SINE MIR 101 152 -56 1894 215 65 45 chrX 566071 566189 -176407951 - MER41D LTR ERV1 -11 546 432 2247 136 0 0 chrX 566189 566499 -176407641 + AluSx SINE Alu 2 311 -1 1894 215 65 45 chrX 566499 566915 -176407225 - MER41D LTR ERV1 -125 432 1 27 83 0 28 chrX 568678 568787 -176405353 + GC_rich Low_complexity Low_complexity 1 106 0 23 0 0 0 chrX 568917 568940 -176405200 + AT_rich Low_complexity Low_complexity 1 23 0 1295 164 9 5 chrX 568986 569200 -176404940 - AluJo SINE Alu -94 218 4 1232 203 114 7 chrX 569207 569478 -176404662 - AluJo SINE Alu -2 300 1 548 282 96 47 chrX 569487 569873 -176404267 - Charlie1b DNA MER1_type -115 408 4 467 193 47 94 chrX 571540 571555 -176402585 - Charlie1 DNA MER1_type 0 2761 2747 2172 104 10 0 chrX 571555 571852 -176402288 - AluSp SINE Alu -13 300 1 467 193 47 94 chrX 571852 572049 -176402091 - Charlie1 DNA MER1_type -14 2747 2559 62 52 0 0 chrX 572053 572150 -176401990 + AT_rich Low_complexity Low_complexity 1 97 0 837 137 75 176 chrX 572171 572324 -176401816 - L1MA7 LINE L1 -3 6288 6121 868 100 0 0 chrX 572324 572444 -176401696 - L1PB1 LINE L1 -1 6150 6031 837 137 75 176 chrX 572444 572467 -176401673 - L1MA7 LINE L1 -170 6121 6097 2218 125 3 3 chrX 572467 572779 -176401361 + AluSx SINE Alu 1 312 0 837 137 75 176 chrX 572779 572907 -176401233 - L1MA7 LINE L1 -194 6097 6014 485 275 23 41 chrX 572915 573133 -176401007 - Charlie1 DNA MER1_type -197 2564 2351 198 71 0 0 chrX 573585 573613 -176400527 + (TAA)n Simple_repeat Simple_repeat 2 29 0 231 146 0 0 chrX 573656 573697 -176400443 + (TAA)n Simple_repeat Simple_repeat 2 42 0 198 71 0 0 chrX 573739 573767 -176400373 + (TAA)n Simple_repeat Simple_repeat 2 29 0 279 79 0 0 chrX 573812 573850 -176400290 + (TAA)n Simple_repeat Simple_repeat 1 38 0 216 97 0 0 chrX 573893 573924 -176400216 + (TAA)n Simple_repeat Simple_repeat 2 32 0 215 158 0 0 chrX 573969 574007 -176400133 + (TAA)n Simple_repeat Simple_repeat 1 38 0 21 36 0 0 chrX 574233 574261 -176399879 + AT_rich Low_complexity Low_complexity 1 28 0 2233 110 3 10 chrX 574521 574829 -176399311 - AluSq SINE Alu -5 308 3 203 184 0 0 chrX 574876 574914 -176399226 + (TAA)n Simple_repeat Simple_repeat 1 38 0 201 39 0 0 chrX 574959 574985 -176399155 + (TAA)n Simple_repeat Simple_repeat 3 28 0 285 29 0 0 chrX 575030 575064 -176399076 + (TAA)n Simple_repeat Simple_repeat 3 36 0 1036 247 136 19 chrX 575634 576067 -176398073 - MLT1D LTR MaLR -19 486 3 612 231 87 63 chrX 576079 576365 -176397775 - MLT1C LTR MaLR -122 345 53 2491 86 0 0 chrX 577149 577452 -176396688 + AluSx SINE Alu 1 303 -9 2080 97 31 3 chrX 580044 580333 -176393807 + AluSx SINE Alu 1 297 -15 1701 107 4 27 chrX 580889 581150 -176392990 + AluSx SINE Alu 42 296 -16 21 0 0 0 chrX 582173 582194 -176391946 + AT_rich Low_complexity Low_complexity 1 21 0 300 283 0 35 chrX 582454 582567 -176391573 + CT-rich Low_complexity Low_complexity 3 111 0 729 115 0 68 chrX 582577 582769 -176391371 + (TTCC)n Simple_repeat Simple_repeat 1 179 0 865 141 0 22 chrX 582806 582990 -176391150 + (TCCC)n Simple_repeat Simple_repeat 1 180 0 27 0 0 0 chrX 583311 583338 -176390802 + AT_rich Low_complexity Low_complexity 1 27 0 303 267 0 30 chrX 583355 583456 -176390684 + G-rich Low_complexity Low_complexity 2 99 0 423 185 8 25 chrX 583464 583583 -176390557 + CT-rich Low_complexity Low_complexity 2 118 0 379 235 10 20 chrX 584681 584779 -176389361 - MER58B DNA MER1_type -20 321 225 2145 94 11 0 chrX 584780 585056 -176389084 + AluSq SINE Alu 2 280 -33 230 191 24 71 chrX 585082 585166 -176388974 - MER58B DNA MER1_type -183 158 79 180 0 0 0 chrX 585242 585262 -176388878 + (T)n Simple_repeat Simple_repeat 1 20 0 1755 151 0 31 chrX 585481 585800 -176388340 + AluJo SINE Alu 1 310 0 911 207 0 0 chrX 585800 585964 -176388176 + AluJb SINE Alu 135 298 -14 1490 176 22 38 chrX 586487 586623 -176387517 + AluJo SINE Alu 1 138 -174 1749 184 3 7 chrX 586623 586922 -176387218 + AluJo SINE Alu 1 298 -14 1490 176 22 38 chrX 586922 587098 -176387042 + AluJo SINE Alu 138 308 -4 2238 106 7 0 chrX 587375 587668 -176386472 - AluSq SINE Alu -18 295 1 419 206 0 20 chrX 587848 587950 -176386190 - L1MA7 LINE L1 -8 6283 6184 2081 207 43 62 chrX 588060 588224 -176385916 - L1MA8 LINE L1 -107 6184 6018 1715 175 14 7 chrX 588224 588516 -176385624 - AluJo SINE Alu -18 294 1 744 196 0 0 chrX 588519 588652 -176385488 - AluJo/FLAM SINE Alu -169 133 1 2081 207 43 62 chrX 588652 589059 -176385081 - L1MA8 LINE L1 -275 6016 5620 2280 107 0 0 chrX 591662 591962 -176382178 - AluSx SINE Alu -12 300 1 2026 138 23 0 chrX 592523 592828 -176381312 - AluSq SINE Alu -1 312 1 2218 151 10 29 chrX 592831 593168 -176380972 - L1PA15 LINE L1 -6 6159 5830 2200 115 3 0 chrX 593168 593463 -176380677 - AluSp SINE Alu -17 296 1 2218 151 10 29 chrX 593463 593535 -176380605 - L1PA15 LINE L1 -335 5830 5758 2295 101 0 0 chrX 593753 594049 -176380091 - AluSq SINE Alu -17 296 1 529 168 0 0 chrX 594233 594340 -176379800 - L1MA7 LINE L1 -1 6290 6184 1381 194 97 119 chrX 594411 594621 -176379519 - L1MA7 LINE L1 -88 6203 5990 1588 190 14 0 chrX 594621 594905 -176379235 - AluJo SINE Alu -24 288 1 739 203 0 0 chrX 594910 595043 -176379097 - FLAM_C SINE Alu 0 133 1 1381 194 97 119 chrX 595043 595423 -176378717 - L1MA7 LINE L1 -305 5986 5620 988 106 0 0 chrX 597045 597177 -176376963 - AluSg/x SINE Alu -11 301 170 1551 202 57 9 chrX 597178 597509 -176376631 - MLT1A1 LTR MaLR -15 350 4 21 36 0 0 chrX 597553 597581 -176376559 + AT_rich Low_complexity Low_complexity 1 28 0 1012 118 0 0 chrX 597822 597958 -176376182 - AluSp/q SINE Alu -18 295 160 198 0 0 0 chrX 598124 598146 -176375994 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 1302 174 126 7 chrX 598364 598634 -176375506 + AluJo SINE Alu 1 302 -10 841 167 0 32 chrX 598634 598790 -176375350 + AluJo/FRAM SINE Alu 134 284 -28 2478 81 0 0 chrX 599092 599390 -176374750 - AluSq SINE Alu -15 298 1 402 192 29 19 chrX 599576 599680 -176374460 - L1MA7 LINE L1 -3 6288 6184 1918 193 52 64 chrX 599789 599953 -176374187 - L1MA8 LINE L1 -100 6191 6027 1685 181 24 0 chrX 599953 600241 -176373899 - AluJo SINE Alu -17 295 1 684 226 0 0 chrX 600251 600384 -176373756 - FLAM_C SINE Alu 0 133 1 1918 193 52 64 chrX 600384 600787 -176373353 - L1MA8 LINE L1 -273 6018 5620 236 177 0 48 chrX 602754 602816 -176371324 - MLT1A1 LTR MaLR -306 59 1 2365 92 0 0 chrX 603127 603422 -176370718 - AluSq SINE Alu -18 295 1 1604 174 3 34 chrX 603426 603748 -176370392 - AluJo SINE Alu 0 312 1 2621 50 3 0 chrX 604269 604572 -176369568 - AluY SINE Alu -7 304 1 5148 24 0 0 chrX 605093 605677 -176368463 - L1PA4 LINE L1 -7 6148 5565 1127 206 58 21 chrX 605677 605968 -176368172 - MLT1A1 LTR MaLR -54 311 10 209 301 23 40 chrX 607429 607605 -176366535 + (CAGGT)n Simple_repeat Simple_repeat 4 176 0 33 0 0 0 chrX 608185 608218 -176365922 + AT_rich Low_complexity Low_complexity 1 33 0 551 260 83 0 chrX 608418 608599 -176365541 - MER58A DNA MER1_type -2 222 27 285 324 0 32 chrX 609312 609497 -176364643 + (TTAGG)n Simple_repeat Simple_repeat 2 180 0 941 55 0 0 chrX 609753 609862 -176364278 - AluSq/x SINE Alu -203 109 1 1311 178 12 42 chrX 609864 610123 -176364017 + MLT1A1 LTR MaLR 31 318 -78 1694 95 5 0 chrX 610123 610345 -176363795 + AluSp SINE Alu 87 309 -4 207 0 0 0 chrX 610494 610517 -176363623 + (A)n Simple_repeat Simple_repeat 1 23 0 258 237 0 0 chrX 611127 611203 -176362937 + (CAT)n Simple_repeat Simple_repeat 2 77 0 1678 181 7 17 chrX 612020 612318 -176361822 + AluJb SINE Alu 1 295 -17 1041 76 0 7 chrX 612498 612642 -176361498 - L1PA8 LINE L1 -341 5831 5689 1665 196 20 38 chrX 612653 613051 -176361089 - L1MB1 LINE L1 -1 6167 5777 2164 109 0 16 chrX 613051 613354 -176360786 - AluSx SINE Alu -14 298 1 2382 64 24 3 chrX 613361 613658 -176360482 - AluY SINE Alu -8 303 1 2071 110 23 17 chrX 613711 614011 -176360129 - AluSx SINE Alu -10 302 1 233 139 23 0 chrX 614017 614060 -176360080 - L1M2 LINE L1 -467 5824 5781 1849 129 0 0 chrX 614160 614415 -176359725 - AluSx SINE Alu -54 258 4 1703 118 22 4 chrX 614426 614698 -176359442 + L1PB1 LINE L1 5867 6143 -8 1189 144 0 42 chrX 614738 614953 -176359187 - Tigger2a DNA MER2_type -228 206 1 977 248 44 50 chrX 614954 615297 -176358843 - MLT1A2 LTR MaLR -33 341 1 1549 109 0 0 chrX 616089 616290 -176357850 + AluSq SINE Alu 1 201 -112 947 55 87 0 chrX 616410 616537 -176357603 - MER85 DNA T2_type 0 139 2 566 233 10 79 chrX 616552 616675 -176357465 - MER4C LTR ERV1 -2 463 333 2418 81 0 0 chrX 616675 616973 -176357167 - AluSx SINE Alu -14 298 1 2211 111 3 3 chrX 616973 617278 -176356862 - AluSx SINE Alu -6 306 1 566 233 10 79 chrX 617278 617355 -176356785 - MER4C LTR ERV1 -130 335 276 897 148 7 187 chrX 617363 617722 -176356418 - MER4A LTR ERV1 -177 522 139 1658 129 53 76 chrX 617789 618091 -176356049 + AluJb SINE Alu 1 295 -17 3307 129 8 2 chrX 618130 618648 -176355492 + MER41B LTR ERV1 113 633 -2 1694 127 8 0 chrX 618776 619013 -176355127 + AluSq SINE Alu 62 300 -13 2069 131 3 0 chrX 619023 619320 -176354820 + AluSx SINE Alu 1 298 -14 1861 162 17 67 chrX 619509 619891 -176354249 + Tigger2a DNA MER2_type 2 365 -2343 2238 127 0 0 chrX 619891 620190 -176353950 + AluSq SINE Alu 1 299 -14 1861 162 17 67 chrX 620190 620209 -176353931 + Tigger2a DNA MER2_type 365 383 -51 697 189 6 6 chrX 620314 620494 -176353646 + (CAT)n Simple_repeat Simple_repeat 1 180 0 806 192 6 0 chrX 620511 620839 -176353301 + (CAT)n Simple_repeat Simple_repeat 1 330 0 231 354 98 32 chrX 621259 621544 -176352596 - L2 LINE L2 -616 2698 2395 1346 66 11 0 chrX 621974 622157 -176351983 + L1PA2 LINE L1 5932 6116 -39 2175 158 71 76 chrX 623125 623353 -176350787 + LTR39 LTR ERV1 1 229 -554 2857 56 26 3 chrX 623353 623730 -176350410 + L1PA7 LINE L1 5767 6152 -2 2175 158 71 76 chrX 623730 624013 -176350127 + LTR39 LTR ERV1 229 511 -272 2278 99 0 17 chrX 624013 624315 -176349825 - AluSq SINE Alu -16 297 1 2175 158 71 76 chrX 624315 624365 -176349775 + LTR39 LTR ERV1 511 560 -223 741 121 17 0 chrX 624465 624581 -176349559 + MLT2A1 LTR ERVL 327 444 0 492 284 138 53 chrX 624766 625048 -176349092 + L1M4 LINE L1 2922 3227 -2919 2232 103 4 0 chrX 625370 625651 -176348489 + AluSx SINE Alu 1 282 -30 200 91 0 30 chrX 625651 625684 -176348456 + (TC)n Simple_repeat Simple_repeat 1 32 0 324 0 0 0 chrX 625691 625727 -176348413 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 677 273 19 19 chrX 625779 625988 -176348152 + MER58A DNA MER1_type 1 209 -15 244 321 176 0 chrX 626345 626510 -176347630 + MER117 DNA MER1_type 4 197 0 240 111 0 0 chrX 626661 626697 -176347443 + (ATG)n Simple_repeat Simple_repeat 1 36 0 372 94 0 0 chrX 626726 626779 -176347361 + (CA)n Simple_repeat Simple_repeat 2 54 0 933 91 0 8 chrX 626785 626906 -176347234 - AluSc SINE Alu -27 282 163 1068 96 0 0 chrX 627006 627141 -176346999 - AluSq SINE Alu -54 259 125 188 365 0 21 chrX 627191 627287 -176346853 - MIR SINE MIR -140 122 29 1473 224 0 20 chrX 627529 627824 -176346316 + AluJo SINE Alu 1 289 -23 264 77 0 0 chrX 627912 627951 -176346189 + LTR9 LTR ERV1 1 39 -573 1096 170 0 6 chrX 627951 628122 -176346018 + AluJb SINE Alu 129 298 -14 526 31 0 0 chrX 628740 628805 -176345335 + LTR9 LTR ERV1 1 65 -547 1507 95 22 56 chrX 628805 629037 -176345103 - AluSg/x SINE Alu -1 309 86 399 41 0 0 chrX 629140 629189 -176344951 + (CCAA)n Simple_repeat Simple_repeat 2 50 0 1708 167 14 3 chrX 629693 629986 -176344154 - AluJo SINE Alu -3 309 14 2405 106 0 0 chrX 630020 630332 -176343808 - AluSp SINE Alu -1 312 1 778 129 57 0 chrX 630335 630459 -176343681 - AluJo SINE Alu -168 144 14 704 207 0 0 chrX 630555 630671 -176343469 + FLAM_A SINE Alu 1 116 -17 2131 122 0 22 chrX 632056 632375 -176341765 - AluSx SINE Alu 0 312 1 1044 101 14 0 chrX 632375 632514 -176341626 - AluSq/x SINE Alu -172 141 1 2381 69 3 0 chrX 632752 633042 -176341098 - AluSx SINE Alu -21 291 1 695 295 74 44 chrX 633091 633430 -176340710 + MER92B LTR ERV1 27 375 -261 2019 158 27 21 chrX 633933 634307 -176339833 - MER1A DNA MER1_type -61 468 93 2523 61 0 3 chrX 634498 634793 -176339347 - AluSc SINE Alu -15 294 1 337 295 0 9 chrX 634981 635086 -176339054 + MLT1C LTR MaLR 360 463 -4 1177 178 73 8 chrX 635107 635354 -176338786 + Tigger2a DNA MER2_type 1 263 -171 311 65 0 0 chrX 635364 635410 -176338730 + Tigger2a DNA MER2_type 232 277 -167 2264 119 0 3 chrX 635415 635727 -176338413 - AluSp SINE Alu -2 311 1 493 49 0 0 chrX 635787 635848 -176338292 + MER1A DNA MER1_type 261 321 -208 443 212 169 0 chrX 635828 635946 -176338194 + Tigger2a DNA MER2_type 292 429 -5 * 1877 168 0 43 chrX 636065 636272 -176337868 + L1PA15 LINE L1 5831 6019 -146 2187 100 0 0 chrX 636272 636552 -176337588 + AluSg SINE Alu 1 280 -30 1877 168 0 43 chrX 636552 636689 -176337451 + L1PA15 LINE L1 6019 6160 -5 385 117 48 58 chrX 636690 636793 -176337347 + Tigger3(Golem) DNA MER2_type 2425 2526 -503 1699 169 3 0 chrX 637932 638234 -176335906 - Tigger1 DNA MER2_type -165 2253 1951 2508 89 0 6 chrX 638235 638550 -176335590 + AluSq SINE Alu 1 313 0 714 213 0 0 chrX 638559 638700 -176335440 + Tigger1 DNA MER2_type 1538 1678 -740 329 115 19 0 chrX 638801 638853 -176335287 - Alu SINE Alu -250 53 1 376 217 12 0 chrX 638870 639038 -176335102 + CT-rich Low_complexity Low_complexity 1 170 0 22 0 0 0 chrX 640015 640037 -176334103 + AT_rich Low_complexity Low_complexity 1 22 0 1344 138 4 9 chrX 640298 640523 -176333617 - MLT1B LTR MaLR 0 390 167 1004 165 10 16 chrX 640529 640723 -176333417 - MLT1B LTR MaLR 0 390 198 274 317 0 0 chrX 641151 641255 -176332885 + C-rich Low_complexity Low_complexity 4 107 0 2237 94 13 3 chrX 642097 642395 -176331745 - AluSp SINE Alu 0 313 13 1405 270 0 104 chrX 642986 643323 -176330817 - AluSx SINE Alu 0 302 1 2403 99 0 0 chrX 643627 643930 -176330210 - AluSx SINE Alu -9 303 1 2366 101 7 0 chrX 644425 644733 -176329407 - AluSg SINE Alu 0 310 1 1639 186 7 14 chrX 645001 645297 -176328843 + AluJo SINE Alu 11 304 -8 226 304 25 0 chrX 645475 645554 -176328586 - MLT1B LTR MaLR -286 181 101 183 204 0 0 chrX 645891 645935 -176328205 + (CA)n Simple_repeat Simple_repeat 2 45 0 1178 78 0 20 chrX 646251 646404 -176327736 + AluSg SINE Alu 1 150 -160 685 259 70 5 chrX 646407 646592 -176327548 - MIR SINE MIR -18 244 48 1044 83 0 0 chrX 646669 646802 -176327338 + AluY SINE Alu 167 299 -12 4970 108 13 18 chrX 646802 647231 -176326909 + L1PA13 LINE L1 5359 5784 -379 1876 99 48 61 chrX 647231 647543 -176326597 + AluSg SINE Alu 1 308 -2 4970 108 13 18 chrX 647543 647903 -176326237 + L1PA13 LINE L1 5784 6144 -19 1049 170 39 5 chrX 648146 648352 -176325788 - L1M2 LINE L1 -506 5785 5573 2163 112 30 0 chrX 648440 648744 -176325396 + AluSq SINE Alu 1 313 0 2018 118 59 42 chrX 649699 649729 -176324411 + THE1B LTR MaLR 3 31 -333 2029 133 17 0 chrX 649729 650022 -176324118 - AluSq SINE Alu -15 298 1 2018 118 59 42 chrX 650022 650346 -176323794 + THE1B LTR MaLR 31 363 -1 3051 62 10 20 chrX 650387 650788 -176323352 + L1PA7 LINE L1 5758 6154 0 1340 212 0 35 chrX 651445 651761 -176322379 - MLT2D LTR ERVL 0 414 110 932 147 0 51 chrX 651761 651917 -176322223 - AluSp/q SINE Alu -12 301 154 443 208 31 6 chrX 652064 652223 -176321917 + GA-rich Low_complexity Low_complexity 1 163 0 1615 174 16 45 chrX 652947 653258 -176320882 + AluJo SINE Alu 1 302 -10 333 196 78 0 chrX 653736 653889 -176320251 + (TA)n Simple_repeat Simple_repeat 1 165 0 40 79 0 0 chrX 653916 654005 -176320135 + AT_rich Low_complexity Low_complexity 1 89 0 354 145 90 18 chrX 654056 654222 -176319918 + (TA)n Simple_repeat Simple_repeat 1 178 0 724 158 16 16 chrX 654237 654364 -176319776 - FLAM_A SINE Alu -6 136 10 2176 112 0 3 chrX 654785 655072 -176319068 - AluSx SINE Alu -8 304 19 1186 195 24 30 chrX 655518 655816 -176318324 + L1MB3 LINE L1 5596 5891 -292 2293 178 11 15 chrX 655816 656277 -176317863 + L1MB3 LINE L1 5723 6181 -2 2168 102 27 0 chrX 656296 656589 -176317551 + AluSp SINE Alu 1 301 -12 305 69 0 52 chrX 656589 656638 -176317502 + L1MB3 LINE L1 6134 6181 -2 2139 127 0 0 chrX 656653 656960 -176317180 + AluSx SINE Alu 1 307 -5 1795 162 30 20 chrX 657890 658193 -176315947 - AluJo SINE Alu -6 306 1 2286 112 0 6 chrX 658212 658525 -176315615 - AluY SINE Alu 0 311 1 2094 68 0 8 chrX 658840 659105 -176315035 + AluY SINE Alu 45 307 -4 1377 98 0 0 chrX 659105 659279 -176314861 + AluSg/x SINE Alu 124 297 -13 505 156 0 33 chrX 659476 659566 -176314574 - AluS SINE Alu -226 87 1 216 0 0 0 chrX 659995 660019 -176314121 + (TG)n Simple_repeat Simple_repeat 1 24 0 832 200 0 0 chrX 660516 660671 -176313469 + AluJo SINE Alu 1 155 -157 1685 166 7 7 chrX 660672 660962 -176313178 + AluJo SINE Alu 23 312 0 1068 109 0 0 chrX 661046 661184 -176312956 + AluSp/q SINE Alu 162 299 -14 2090 101 0 0 chrX 661308 661584 -176312556 + AluSx SINE Alu 37 312 0 1301 235 68 29 chrX 661608 662050 -176312090 + MLT1C LTR MaLR 7 465 -2 2324 91 0 3 chrX 663067 663364 -176310776 - AluSc SINE Alu -13 296 1 301 263 30 0 chrX 664629 664728 -176309412 - MLT2D LTR ERVL -310 104 3 29 70 0 0 chrX 664925 664982 -176309158 + AT_rich Low_complexity Low_complexity 1 57 0 297 0 0 0 chrX 664985 665018 -176309122 + (TA)n Simple_repeat Simple_repeat 1 33 0 3098 61 8 5 chrX 665020 665645 -176308495 - L1PA7 LINE L1 -2 6152 5392 3614 161 4 85 chrX 665760 666538 -176307602 - LTR62 LTR ERVK -4 715 1 1280 201 60 2 chrX 666543 666952 -176307188 - LTR19A LTR ERV1 0 486 1 2197 129 0 3 chrX 667786 668096 -176306044 + AluSq SINE Alu 1 309 -4 982 250 79 27 chrX 668281 668664 -176305476 + MLT1C LTR MaLR 45 454 -13 492 169 0 11 chrX 669450 669461 -176304679 + L1PB1 LINE L1 5782 5792 -359 219 88 0 0 chrX 669461 669495 -176304645 + (CA)n Simple_repeat Simple_repeat 2 35 0 492 169 0 11 chrX 669495 669572 -176304568 + L1PB1 LINE L1 5792 5869 -282 2390 66 0 3 chrX 669573 669875 -176304265 - L1PA7 LINE L1 -3 6151 5851 3321 172 33 33 chrX 669875 670487 -176303653 + L1PB2 LINE L1 5460 6095 -56 2202 120 0 10 chrX 670487 670787 -176303353 + AluSx SINE Alu 4 300 -12 3321 172 33 33 chrX 670787 670845 -176303295 + L1PB2 LINE L1 6094 6151 0 1929 212 22 7 chrX 671075 671481 -176302659 - MSTB1 LTR MaLR 0 432 21 2372 114 0 0 chrX 671564 671872 -176302268 - AluSx SINE Alu -4 308 1 281 232 24 19 chrX 672653 672760 -176301380 - MLT1C LTR MaLR -353 114 31 896 97 0 0 chrX 672818 672931 -176301209 + AluSg SINE Alu 1 113 -197 989 85 0 0 chrX 672931 673060 -176301080 + L1PA8 LINE L1 6034 6162 -10 421 217 0 23 chrX 673082 673207 -176300933 - MLT1D LTR MaLR -10 495 260 846 122 0 0 chrX 673207 673330 -176300810 + AluSp/q SINE Alu 190 312 -1 2087 104 10 23 chrX 673615 673922 -176300218 + AluSc SINE Alu 6 308 -1 562 75 54 21 chrX 674062 674155 -176299985 + MER4A LTR ERV1 3 98 -566 257 59 0 0 chrX 674167 674201 -176299939 + Alu SINE Alu 1 34 -274 192 182 23 23 chrX 874333 874377 -176099763 + MIR SINE MIR 219 262 0 211 329 98 0 chrX 874393 874475 -176099665 - L2 LINE L2 -36 3236 3147 476 337 52 95 chrX 874486 875002 -176099138 + L3 LINE CR1 832 1325 -252 26 0 0 0 chrX 875130 875156 -176098984 + AT_rich Low_complexity Low_complexity 1 26 0 387 324 92 0 chrX 875237 875410 -176098730 - L2 LINE L2 -5 3308 3120 342 263 123 45 chrX 875548 875727 -176098413 + MIR SINE MIR 21 213 -49 801 330 77 21 chrX 875779 876246 -176097894 + LTR33 LTR ERVL 29 521 0 258 337 0 10 chrX 876911 877009 -176097131 + ERVL LTR ERVL 835 931 -4833 619 314 29 54 chrX 877632 877947 -176096193 + ERVL LTR ERVL 1492 1798 -3966 374 311 79 18 chrX 877982 878146 -176095994 + ERVL LTR ERVL 2425 2598 -3166 349 232 112 90 chrX 878374 878593 -176095547 + MLT1J1 LTR MaLR 281 444 -2 606 311 100 37 chrX 878707 879138 -176095002 + L1MC4a LINE L1 5437 5894 -1914 216 67 0 0 chrX 879184 879214 -176094926 + (CA)n Simple_repeat Simple_repeat 1 30 0 748 216 21 53 chrX 880470 880660 -176093480 + MER5A DNA MER1_type 2 185 -4 353 322 54 21 chrX 881167 881409 -176092731 - L1ME LINE L1 -502 5664 5415 246 344 70 13 chrX 881461 881618 -176092522 - MIR SINE MIR -15 247 82 23 0 0 0 chrX 881964 881987 -176092153 + AT_rich Low_complexity Low_complexity 1 23 0 382 279 0 18 chrX 882052 882163 -176091977 - MIR SINE MIR -2 260 152 260 163 0 0 chrX 882163 882212 -176091928 + MER50 LTR ERV1 1 49 -685 864 80 0 0 chrX 882298 882410 -176091730 - AluSg/x SINE Alu -12 298 187 707 194 0 0 chrX 882413 882537 -176091603 + AluJo/FRAM SINE Alu 171 294 -18 25 0 0 0 chrX 882553 882578 -176091562 + AT_rich Low_complexity Low_complexity 1 25 0 6210 161 17 13 chrX 882613 882654 -176091486 + L1MA4 LINE L1 4135 4174 -2126 1665 140 75 7 chrX 882654 882946 -176091194 + AluSx SINE Alu 1 312 0 6210 161 17 13 chrX 882946 884719 -176089421 + L1MA4 LINE L1 4174 5958 -342 368 176 55 0 chrX 884747 884838 -176089302 + L1MB3 LINE L1 6087 6182 -1 22 0 0 0 chrX 885682 885704 -176088436 + AT_rich Low_complexity Low_complexity 1 22 0 1355 322 70 27 chrX 885962 886589 -176087551 + L1MA6 LINE L1 4 657 -6132 4143 206 19 53 chrX 886944 887990 -176086150 + L1MA6 LINE L1 1322 2331 -4458 * 11115 183 57 8 chrX 887982 889046 -176085094 + L1MA6 LINE L1 3266 4276 -2666 6383 50 10 0 chrX 889046 889847 -176084293 + L1PA5 LINE L1 5343 6151 -3 11115 183 57 8 chrX 889847 891801 -176082339 + L1MA6 LINE L1 4276 6132 -810 198 0 0 0 chrX 891801 891823 -176082317 + (CA)n Simple_repeat Simple_repeat 1 22 0 * 345 24 0 0 chrX 891822 891864 -176082276 + (GA)n Simple_repeat Simple_repeat 2 43 0 11115 183 57 8 chrX 891823 892346 -176081794 + L1MA6 LINE L1 6132 6942 0 438 53 0 0 chrX 892688 892745 -176081395 + (CA)n Simple_repeat Simple_repeat 1 57 0 207 332 63 45 chrX 893062 893285 -176080855 + L2 LINE L2 2622 2848 -466 187 292 0 0 chrX 893294 893342 -176080798 + L2 LINE L2 2712 2759 -555 263 255 51 61 chrX 893703 893801 -176080339 + L2 LINE L2 3174 3270 -2 190 229 21 21 chrX 894731 894779 -176079361 + L2 LINE L2 3262 3309 -4 1960 268 38 13 chrX 894873 895080 -176079060 + MLT1F LTR MaLR 1 201 -341 1572 253 49 26 chrX 895080 895587 -176078553 - LTR40a LTR ERVL 0 519 1 1960 268 38 13 chrX 895587 895908 -176078232 + MLT1F LTR MaLR 201 542 0 261 302 27 27 chrX 895909 896058 -176078082 + MLT1F-int LTR MaLR 2 150 -1221 466 339 26 0 chrX 896081 896311 -176077829 + MLT1F-int LTR MaLR 277 512 -859 259 325 100 25 chrX 897568 897688 -176076452 + MIR SINE MIR 16 144 -64 7215 129 18 0 chrX 897692 898803 -176075337 - Tigger1 DNA MER2_type 0 2418 1288 4431 160 62 7 chrX 898805 899281 -176074859 - Tigger1 DNA MER2_type -1567 851 312 189 0 0 0 chrX 899281 899302 -176074838 + (GA)n Simple_repeat Simple_repeat 2 22 0 4431 160 62 7 chrX 899302 899631 -176074509 - Tigger1 DNA MER2_type -2106 312 2 201 74 0 0 chrX 900518 900545 -176073595 + (TG)n Simple_repeat Simple_repeat 1 27 0 227 161 18 0 chrX 901199 901255 -176072885 + (TA)n Simple_repeat Simple_repeat 2 58 0 444 319 52 7 chrX 901868 902003 -176072137 - MIR3 SINE MIR -38 170 30 4654 40 43 0 chrX 902297 902880 -176071260 + LTR14B LTR ERVK 1 608 0 29 0 0 0 chrX 903260 903289 -176070851 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chrX 904905 904933 -176069207 + AT_rich Low_complexity Low_complexity 1 28 0 207 281 317 0 chrX 905028 905110 -176069030 - L2 LINE L2 0 3313 3206 340 323 52 13 chrX 905226 905381 -176068759 + HAL1b LINE L1 1187 1347 -1 308 331 18 49 chrX 905635 905798 -176068342 - MIR SINE MIR -65 197 40 199 407 58 39 chrX 906500 906859 -176067281 + L2 LINE L2 2809 3174 -98 240 306 52 77 chrX 907751 907999 -176066141 - LTR33 LTR ERVL -1 520 279 1345 199 0 65 chrX 908294 908615 -176065525 - AluJo SINE Alu -12 300 1 293 305 21 59 chrX 908682 908869 -176065271 - HERVL LTR ERVL -326 5328 5149 22 35 0 0 chrX 909761 909790 -176064350 + GC_rich Low_complexity Low_complexity 1 29 0 1633 158 0 26 chrX 909919 910192 -176063948 - AluSx SINE Alu -46 266 1 351 241 80 58 chrX 913053 913190 -176060950 - MIR SINE MIR -56 206 67 348 273 115 22 chrX 913672 913811 -176060329 - MIR SINE MIR -3 259 108 405 353 98 5 chrX 914404 914628 -176059512 + MIR SINE MIR 12 256 -6 21 0 0 0 chrX 918234 918255 -176055885 + AT_rich Low_complexity Low_complexity 1 21 0 283 313 92 19 chrX 918687 918949 -176055191 + L1M4 LINE L1 4767 5047 -1099 1504 204 30 9 chrX 918987 919320 -176054820 - Charlie1b DNA MER1_type -176 347 8 27 0 0 0 chrX 920266 920293 -176053847 + AT_rich Low_complexity Low_complexity 1 27 0 192 234 0 0 chrX 920891 920938 -176053202 + CT-rich Low_complexity Low_complexity 6 52 0 5519 208 20 27 chrX 920992 921076 -176053064 + Cheshire DNA MER1_type 10 93 -2327 2146 107 10 0 chrX 921076 921367 -176052773 - AluSg SINE Alu -16 294 1 5519 208 20 27 chrX 921367 922507 -176051633 + Cheshire DNA MER1_type 93 1225 -1195 2955 179 44 123 chrX 922497 923470 -176050670 + Cheshire DNA MER1_type 1486 2377 -43 * 2323 89 13 0 chrX 923470 923773 -176050367 - AluY SINE Alu -4 307 1 2955 179 44 123 chrX 923773 923814 -176050326 + Cheshire DNA MER1_type 2377 2420 0 2459 101 28 6 chrX 924973 925329 -176048811 + THE1B LTR MaLR 1 364 0 10603 107 33 0 chrX 925329 926858 -176047282 + THE1B-int LTR MaLR 1 1580 0 2466 124 17 0 chrX 926861 927216 -176046924 + THE1B LTR MaLR 4 364 0 225 232 0 0 chrX 927818 927887 -176046253 + (TGAA)n Simple_repeat Simple_repeat 1 69 0 24 0 0 0 chrX 928875 928899 -176045241 + AT_rich Low_complexity Low_complexity 1 24 0 2485 62 0 10 chrX 929394 929700 -176044440 - AluY SINE Alu -8 303 1 516 283 61 53 chrX 931343 931703 -176042437 - MER34B LTR ERV1 0 565 203 180 300 117 42 chrX 931830 931950 -176042190 + L2 LINE L2 3140 3268 -4 214 343 14 0 chrX 932283 932356 -176041784 + MIR SINE MIR 150 223 -39 567 186 5 147 chrX 932879 933083 -176041057 + L1MD3 LINE L1 7322 7496 -499 344 207 103 0 chrX 933078 933165 -176040975 + L1MC3 LINE L1 7357 7452 -333 * 396 0 0 0 chrX 933167 933211 -176040929 + (CA)n Simple_repeat Simple_repeat 1 44 0 189 0 0 0 chrX 933220 933241 -176040899 + (GA)n Simple_repeat Simple_repeat 2 22 0 25852 107 7 6 chrX 933260 933890 -176040250 + L1P LINE L1 1228 1856 -4290 2346 106 0 0 chrX 933890 934193 -176039947 + AluSg SINE Alu 3 305 -5 25852 107 7 6 chrX 934193 937470 -176036670 + L1P LINE L1 1856 5139 -1007 29 47 0 0 chrX 937472 937515 -176036625 + AT_rich Low_complexity Low_complexity 1 43 0 339 184 23 0 chrX 937612 937699 -176036441 + L1ME4a LINE L1 5977 6065 -56 2238 103 0 17 chrX 938404 938705 -176035435 + AluSx SINE Alu 1 296 -16 1710 176 7 14 chrX 938720 939010 -176035130 + AluJo SINE Alu 6 293 -19 25 0 0 0 chrX 939010 939035 -176035105 + AT_rich Low_complexity Low_complexity 1 25 0 885 174 97 0 chrX 939536 939732 -176034408 + MER33 DNA MER1_type 5 219 -105 218 292 0 15 chrX 940271 940336 -176033804 + GA-rich Low_complexity Low_complexity 1 64 0 3337 128 31 10 chrX 940381 940897 -176033243 - MER1A DNA MER1_type 0 527 1 23 0 0 0 chrX 941692 941715 -176032425 + AT_rich Low_complexity Low_complexity 1 23 0 464 133 8 125 chrX 941732 941860 -176032280 + MER33 DNA MER1_type 251 363 0 512 232 26 45 chrX 942516 942671 -176031469 - L2 LINE L2 0 3313 3162 27 29 0 0 chrX 943738 943772 -176030368 + AT_rich Low_complexity Low_complexity 1 34 0 2016 197 27 15 chrX 944230 944642 -176029498 + MER74A LTR ERVL 128 544 -14 361 238 98 14 chrX 944764 944907 -176029233 + L1MCa LINE L1 1345 1499 -4927 1689 171 13 25 chrX 945175 945490 -176028650 + AluJo SINE Alu 1 311 -1 327 167 0 0 chrX 946053 946119 -176028021 + T-rich Low_complexity Low_complexity 1 66 0 195 42 0 0 chrX 946162 946186 -176027954 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 34 0 0 0 chrX 946737 946771 -176027369 + AT_rich Low_complexity Low_complexity 1 34 0 216 0 0 0 chrX 946984 947008 -176027132 + (A)n Simple_repeat Simple_repeat 1 24 0 31 0 0 0 chrX 947601 947632 -176026508 + AT_rich Low_complexity Low_complexity 1 31 0 1806 184 3 0 chrX 947684 947994 -176026146 + AluJo SINE Alu 1 311 -1 206 362 41 53 chrX 948197 948515 -176025625 - L2 LINE L2 -957 2357 2044 243 257 0 29 chrX 949205 949275 -176024865 + Charlie8 DNA MER1_type 2344 2411 -6 1583 163 10 17 chrX 950809 951098 -176023042 - AluJb SINE Alu 0 312 26 26 30 0 0 chrX 951201 951234 -176022906 + AT_rich Low_complexity Low_complexity 1 33 0 1505 192 23 23 chrX 951391 951698 -176022442 + AluSx SINE Alu 1 307 -5 21 36 0 0 chrX 952344 952372 -176021768 + AT_rich Low_complexity Low_complexity 1 28 0 1483 213 3 17 chrX 953742 954042 -176020098 - AluJo SINE Alu -16 296 1 240 179 0 0 chrX 954378 954417 -176019723 + Charlie5 DNA MER1_type 12 50 -2562 1280 109 14 14 chrX 954539 954750 -176019390 + L1MA5A LINE L1 6086 6296 -1 286 284 11 0 chrX 954751 954839 -176019301 + L1ME1 LINE L1 6028 6116 -50 1975 144 13 3 chrX 954845 955143 -176018997 + AluJb SINE Alu 5 305 -7 2192 101 7 0 chrX 955220 955522 -176018618 + AluSg SINE Alu 1 304 0 850 148 42 64 chrX 955554 955790 -176018350 + Charlie5 DNA MER1_type 2355 2585 -27 193 353 0 0 chrX 955970 956038 -176018102 - L2 LINE L2 -8 3264 3197 362 354 36 31 chrX 956041 956264 -176017876 - L2 LINE L2 -399 2915 2692 429 242 81 12 chrX 956734 956895 -176017245 + L1ME4a LINE L1 5929 6100 -21 1203 318 95 29 chrX 957145 958019 -176016121 + L2 LINE L2 2149 3081 -232 681 289 68 17 chrX 958560 958653 -176015487 - MIR SINE MIR -14 248 161 2042 157 8 45 chrX 958653 958946 -176015194 + MER47A DNA MER2_type 1 278 -2045 2236 102 10 0 chrX 958946 959241 -176014899 - AluSx SINE Alu -14 298 1 2042 157 8 45 chrX 959241 959324 -176014816 + MER47A DNA MER2_type 278 363 -3 681 289 68 17 chrX 959324 959465 -176014675 - MIR SINE MIR -101 161 2 861 232 91 75 chrX 960692 960998 -176013142 - MLT1D LTR MaLR 0 505 190 2083 137 7 0 chrX 960998 961290 -176012850 - AluSx SINE Alu -18 294 1 861 232 91 75 chrX 961290 961367 -176012773 - MLT1D LTR MaLR -315 190 116 284 296 138 37 chrX 962161 962350 -176011790 - MLT1J LTR MaLR -261 250 43 292 339 18 18 chrX 963678 963790 -176010350 - L2 LINE L2 -609 2705 2594 2635 140 22 36 chrX 963799 964292 -176009848 - LTR29 LTR ERV1 0 622 137 242 29 29 0 chrX 964707 964742 -176009398 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 1589 174 19 32 chrX 965709 966019 -176008121 + AluJo SINE Alu 1 306 -6 2811 93 0 3 chrX 966536 966911 -176007229 + THE1C LTR MaLR 1 374 -1 315 0 0 0 chrX 967111 967146 -176006994 + (A)n Simple_repeat Simple_repeat 1 35 0 28 61 0 0 chrX 968516 968565 -176005575 + AT_rich Low_complexity Low_complexity 1 49 0 480 18 0 0 chrX 969407 969464 -176004676 + (CA)n Simple_repeat Simple_repeat 2 58 0 364 329 21 14 chrX 969855 969995 -176004145 + MIR3 SINE MIR 6 146 -62 367 321 142 14 chrX 970399 970695 -176003445 + L2 LINE L2 2843 3176 -137 556 320 109 68 chrX 970699 971555 -176002585 + L2 LINE L2 2436 3313 0 242 269 6 154 chrX 971559 971715 -176002425 + L2 LINE L2 3174 3306 -7 815 313 55 13 chrX 972203 972571 -176001569 + LTR16A LTR ERVL 19 429 -21 274 156 22 0 chrX 973329 973374 -176000766 + MLT1D LTR MaLR 1 46 -459 321 293 101 0 chrX 974473 974572 -175999568 - MIR3 SINE MIR -48 160 52 649 134 34 8 chrX 975878 975994 -175998146 + MLT2C1 LTR ERVL 3 121 -276 3228 114 37 18 chrX 975994 976502 -175997638 + LTR8 LTR ERV1 1 518 -173 1334 112 31 10 chrX 976538 976734 -175997406 + LTR8 LTR ERV1 492 691 0 1032 199 57 27 chrX 976737 976952 -175997188 + MLT2C1 LTR ERVL 128 354 -43 182 37 37 0 chrX 976952 976979 -175997161 + (TCTA)n Simple_repeat Simple_repeat 2 29 0 1032 199 57 27 chrX 976979 977025 -175997115 + MLT2C1 LTR ERVL 354 397 0 252 130 0 0 chrX 977453 977499 -175996641 + (GA)n Simple_repeat Simple_repeat 1 46 0 2778 124 76 68 chrX 977969 978510 -175995630 - LTR10A LTR ERV1 -64 545 1 1889 236 76 9 chrX 978515 978976 -175995164 - MLT1F LTR MaLR -50 492 1 2214 95 62 9 chrX 979438 979775 -175994365 - THE1A LTR MaLR 0 355 1 288 401 37 0 chrX 980589 980751 -175993389 + MIR3 SINE MIR 10 177 -31 1356 167 51 31 chrX 981864 982157 -175991983 + MLT1B LTR MaLR 1 299 -91 343 107 89 0 chrX 982157 982213 -175991927 - MLT1A2 LTR MaLR -1 389 329 1927 109 34 0 chrX 982215 982482 -175991658 - AluSc SINE Alu -8 301 26 652 181 83 0 chrX 982586 982730 -175991410 - MLT1A2 LTR MaLR -218 156 1 511 131 107 0 chrX 982732 982816 -175991324 + MLT1B LTR MaLR 297 389 -1 711 226 6 0 chrX 982868 983036 -175991104 - MER97b DNA MER1_type? -321 732 564 1385 162 9 4 chrX 983074 983303 -175990837 - MER46A DNA MER2_type -6 230 1 863 201 242 0 chrX 983303 983547 -175990593 - MER58B DNA MER1_type -35 306 4 1280 229 87 0 chrX 983550 983614 -175990526 - MER97a DNA MER1_type? -325 569 512 1668 148 55 10 chrX 983614 983904 -175990236 - AluJo SINE Alu -1 311 9 1280 229 87 0 chrX 983904 984184 -175989956 - MER97a DNA MER1_type? -382 512 195 367 244 6 21 chrX 984273 984440 -175989700 - MER97a DNA MER1_type? -848 205 4 333 0 0 0 chrX 984943 984980 -175989160 + (TG)n Simple_repeat Simple_repeat 1 37 0 460 175 93 10 chrX 985667 985764 -175988376 - MIR SINE MIR -74 188 84 246 337 116 0 chrX 987777 987863 -175986277 - MIR SINE MIR -76 132 37 1586 101 28 15 chrX 989617 989921 -175984219 + MER61A LTR ERV1 1 343 0 846 201 0 27 chrX 990435 990619 -175983521 - AluJb SINE Alu -7 305 127 5779 190 66 36 chrX 990767 992172 -175981968 - Charlie1a DNA MER1_type -1 1454 7 573 251 18 35 chrX 992724 992895 -175981245 - MIR SINE MIR 0 262 95 533 307 76 44 chrX 992895 993710 -175980430 + L1MC/D LINE L1 4494 5361 -1122 2442 80 3 0 chrX 993710 994021 -175980119 + AluSp SINE Alu 1 312 -1 533 307 76 44 chrX 994021 994399 -175979741 + L1MC/D LINE L1 5361 5725 -758 213 161 54 11 chrX 994760 994853 -175979287 + (TA)n Simple_repeat Simple_repeat 2 98 0 276 289 94 25 chrX 995061 995220 -175978920 - L2 LINE L2 -169 3103 2934 2426 125 11 19 chrX 995656 996033 -175978107 - THE1C LTR MaLR 0 375 2 9321 124 46 43 chrX 996034 997609 -175976531 - THE1C-int LTR MaLR 0 1580 1 2282 117 35 16 chrX 997609 997976 -175976164 - THE1C LTR MaLR 0 375 2 1007 174 92 5 chrX 998347 998542 -175975598 - MLT1B LTR MaLR 0 390 179 1164 188 0 22 chrX 998573 998802 -175975338 - AluJo SINE Alu -3 309 86 740 224 0 46 chrX 998830 999004 -175975136 - MLT1B LTR MaLR -224 166 1 216 122 0 0 chrX 999012 999053 -175975087 + (T)n Simple_repeat Simple_repeat 1 41 0 1460 179 10 57 chrX 999279 999580 -175974560 - AluJb SINE Alu -21 291 5 181 212 0 0 chrX 999619 999652 -175974488 - MIR SINE MIR -64 144 112 1375 215 90 68 chrX 999707 1000332 -175973808 - LTR8A LTR ERV1 0 727 55 4646 152 21 28 chrX 1000363 1001327 -175972813 - MER11C LTR ERVK -25 1046 1 252 68 136 23 chrX 1001336 1001380 -175972760 - LTR8 LTR ERV1 -642 49 1 2343 195 12 82 chrX 1001471 1002067 -175972073 - MLT2B3 LTR ERVL 0 554 1 199 185 0 31 chrX 1002075 1002140 -175972000 + (CAT)n Simple_repeat Simple_repeat 1 63 0 291 184 345 0 chrX 1003240 1003327 -175970813 + L2 LINE L2 3195 3311 -2 186 287 115 11 chrX 1003795 1003882 -175970258 + MIR SINE MIR 36 131 -131 2034 117 3 0 chrX 1004190 1004473 -175969667 + AluSq SINE Alu 17 300 -13 290 255 78 54 chrX 1005349 1005553 -175968587 - L1P5 LINE L1 -580 5574 5366 457 200 0 0 chrX 1005576 1005651 -175968489 + MER1B DNA MER1_type 7 81 -256 * 1057 131 17 40 chrX 1005645 1005820 -175968320 + MER1B DNA MER1_type 169 339 0 200 143 24 0 chrX 1006297 1006339 -175967801 + (TA)n Simple_repeat Simple_repeat 1 43 0 433 232 119 81 chrX 1009122 1009307 -175964833 + MIR SINE MIR 28 219 -43 250 364 50 0 chrX 1009336 1009476 -175964664 + LTR16A LTR ERVL 225 371 -79 759 220 47 86 chrX 1009989 1010056 -175964084 - MIR SINE MIR 0 262 194 778 172 8 15 chrX 1010056 1010190 -175963950 - FLAM_C SINE Alu 0 133 1 759 220 47 86 chrX 1010190 1010377 -175963763 - MIR SINE MIR -68 194 18 453 233 0 78 chrX 1012131 1012247 -175961893 - MER69 DNA AcHobo -70 2456 1 515 264 49 28 chrX 1012420 1012564 -175961576 - MER63A DNA MER1_type 0 210 64 638 299 118 50 chrX 1012947 1013345 -175960795 - L2 LINE L2 0 3313 2889 494 349 45 65 chrX 1013331 1013583 -175960557 - L2 LINE L2 -356 2958 2718 * 1377 172 122 11 chrX 1013583 1013845 -175960295 - AluJb SINE Alu -21 291 1 494 349 45 65 chrX 1013845 1014054 -175960086 - L2 LINE L2 -596 2718 2506 1955 137 38 3 chrX 1014054 1014346 -175959794 - AluSx SINE Alu -10 302 1 1515 214 0 22 chrX 1014406 1014724 -175959416 + AluJo SINE Alu 1 311 -1 246 225 0 14 chrX 1015586 1015657 -175958483 - L1MC4 LINE L1 -1320 6722 6653 233 292 0 0 chrX 1015624 1015696 -175958444 + L1MC4 LINE L1 6614 6685 -1357 * 2252 99 0 0 chrX 1015697 1015979 -175958161 - AluSx SINE Alu -29 283 2 22 0 0 0 chrX 1016370 1016392 -175957748 + AT_rich Low_complexity Low_complexity 1 22 0 447 265 112 6 chrX 1016551 1016721 -175957419 + MIR SINE MIR 2 189 -73 1126 298 24 38 chrX 1017352 1017805 -175956335 + L2 LINE L2 1804 2250 -1064 1217 254 95 40 chrX 1017808 1018333 -175955807 + MLT1G1 LTR MaLR 1 595 0 1107 286 160 25 chrX 1018346 1019200 -175954940 + L2 LINE L2 2262 3229 -84 1821 233 37 31 chrX 1019655 1020165 -175953975 - LTR40a LTR ERVL 0 519 7 1226 207 47 76 chrX 1020169 1020551 -175953589 + MLT1A2 LTR MaLR 4 374 0 1602 179 26 29 chrX 1020609 1020917 -175953223 + AluJo SINE Alu 1 307 -5 26 30 0 0 chrX 1021055 1021088 -175953052 + AT_rich Low_complexity Low_complexity 1 33 0 197 327 71 44 chrX 1021280 1021393 -175952747 + MIR SINE MIR 68 183 -79 231 393 131 35 chrX 1021656 1021969 -175952171 + L2 LINE L2 2925 3267 -5 726 309 36 12 chrX 1022056 1022308 -175951832 + MIR SINE MIR 5 262 0 432 0 0 0 chrX 1023759 1023807 -175950333 + (TG)n Simple_repeat Simple_repeat 2 49 0 429 20 0 0 chrX 1024508 1024558 -175949582 + (TAGA)n Simple_repeat Simple_repeat 1 50 0 346 338 101 31 chrX 1025611 1025839 -175948301 + MIR SINE MIR 9 252 -10 502 324 49 0 chrX 1025992 1026177 -175947963 + MIR SINE MIR 3 196 -66 2368 92 0 0 chrX 1026707 1027000 -175947140 + AluSg SINE Alu 1 293 -17 24 32 0 0 chrX 1027887 1027918 -175946222 + AT_rich Low_complexity Low_complexity 1 31 0 660 310 51 0 chrX 1028353 1028550 -175945590 + MIR SINE MIR 25 231 -31 233 266 25 0 chrX 1028574 1028653 -175945487 + (TA)n Simple_repeat Simple_repeat 2 82 0 306 0 0 0 chrX 1029670 1029704 -175944436 + (TG)n Simple_repeat Simple_repeat 2 35 0 22 35 0 0 chrX 1029704 1029733 -175944407 + AT_rich Low_complexity Low_complexity 1 29 0 25 83 0 0 chrX 1030022 1030082 -175944058 + AT_rich Low_complexity Low_complexity 1 60 0 377 237 43 36 chrX 1032147 1032286 -175941854 + MIR SINE MIR 13 152 -110 954 238 28 68 chrX 1032739 1033063 -175941077 + MER93a LTR ERV1 92 402 0 651 355 105 13 chrX 1033207 1033598 -175940542 + L2 LINE L2 793 1219 -2095 840 186 61 85 chrX 1033759 1034006 -175940134 - MER57A LTR ERV1 -28 375 135 3374 159 5 5 chrX 1034024 1034616 -175939524 - L1PA16 LINE L1 -3 6163 5572 188 371 52 35 chrX 1034950 1035066 -175939074 + L2 LINE L2 3142 3259 -13 396 318 12 29 chrX 1035218 1035388 -175938752 + MIR SINE MIR 1 167 -95 2096 61 0 58 chrX 1035638 1035933 -175938207 - L1PA7 LINE L1 -11 6143 5866 11928 114 9 27 chrX 1035958 1038416 -175935724 - L1P3 LINE L1 -4001 2460 2 25 65 0 0 chrX 1038689 1038735 -175935405 + AT_rich Low_complexity Low_complexity 1 46 0 2411 115 120 5 chrX 1039607 1039991 -175934149 - MSTA LTR MaLR 0 428 1 254 202 24 36 chrX 1040393 1040477 -175933663 + (TATATG)n Simple_repeat Simple_repeat 4 86 0 195 386 64 0 chrX 1042707 1042847 -175931293 - MIR SINE MIR -17 245 97 213 182 68 0 chrX 1042898 1042942 -175931198 + MIR SINE MIR 122 168 -94 2526 44 3 0 chrX 1043206 1043501 -175930639 - AluY SINE Alu -15 296 1 230 313 109 55 chrX 1043646 1043774 -175930366 + MIR3 SINE MIR 51 185 -23 2197 101 24 3 chrX 1144113 1144409 -175829731 - AluSg SINE Alu -8 302 1 649 165 0 10 chrX 1145569 1145819 -175828321 + AluJb SINE Alu 11 294 -18 368 236 138 98 chrX 1145977 1145989 -175828151 - MIR SINE MIR -25 237 227 4722 106 25 63 chrX 1145989 1146799 -175827341 - MER4E LTR ERV1 0 779 1 368 236 138 98 chrX 1146799 1146956 -175827184 - MIR SINE MIR -35 227 54 2288 101 0 0 chrX 1146956 1147252 -175826888 + AluSg SINE Alu 1 296 -14 368 236 138 98 chrX 1147252 1147306 -175826834 - MIR SINE MIR -208 54 4 22 25 0 25 chrX 1147850 1147868 -175826272 + AT_rich Low_complexity Low_complexity 1 18 -21 1977 146 0 7 chrX 1147868 1148155 -175825985 + AluSx SINE Alu 1 285 -27 22 25 0 25 chrX 1148155 1148176 -175825964 + AT_rich Low_complexity Low_complexity 18 39 0 457 279 127 12 chrX 1148377 1148542 -175825598 + MER5A DNA MER1_type 6 189 0 180 354 34 41 chrX 1148990 1149137 -175825003 + L2 LINE L2 333 478 -2836 23 68 0 0 chrX 1149231 1149275 -175824865 + AT_rich Low_complexity Low_complexity 1 44 0 324 299 15 104 chrX 1149592 1149793 -175824347 - MER102b DNA MER1_type 0 341 159 2394 59 3 3 chrX 1149793 1150081 -175824059 - AluSp SINE Alu -16 297 10 1277 124 0 83 chrX 1150139 1150356 -175823784 - AluSx SINE Alu -10 302 104 710 36 0 0 chrX 1150356 1150440 -175823700 - AluY SINE Alu -13 298 215 739 119 0 51 chrX 1150440 1150558 -175823582 - AluSq/x SINE Alu -196 116 5 1843 136 52 0 chrX 1150610 1150896 -175823244 + AluSx SINE Alu 1 301 -11 870 227 76 29 chrX 1150896 1151239 -175822901 + L1MC4 LINE L1 7211 7569 -473 599 180 0 9 chrX 1151247 1151358 -175822782 + Tigger7 DNA MER2_type 2370 2479 -8 2364 90 0 3 chrX 1152381 1152681 -175821459 - AluSc SINE Alu -10 299 1 225 241 0 0 chrX 1152760 1152814 -175821326 - MER53 DNA DNA -135 54 1 426 244 119 19 chrX 1152876 1153036 -175821104 + MER102a DNA MER1_type 135 310 -20 216 0 0 0 chrX 1153205 1153229 -175820911 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1277 108 5 78 chrX 1153239 1153443 -175820697 - AluSg/x SINE Alu -23 289 101 1513 163 29 56 chrX 1153654 1153960 -175820180 - AluJb SINE Alu -14 298 1 29 0 0 0 chrX 1155544 1155573 -175818567 + AT_rich Low_complexity Low_complexity 1 29 0 1906 152 3 29 chrX 1155722 1156031 -175818109 - AluSx SINE Alu -11 301 1 39 50 0 0 chrX 1156586 1156646 -175817494 + AT_rich Low_complexity Low_complexity 1 60 0 1894 169 10 0 chrX 1156681 1156982 -175817158 - AluJo SINE Alu -8 304 1 1303 184 41 68 chrX 1157120 1157413 -175816727 - AluJo SINE Alu -23 289 5 678 211 0 0 chrX 1157481 1157604 -175816536 - AluJb SINE Alu -181 131 9 375 154 0 0 chrX 1157863 1157928 -175816212 + T-rich Low_complexity Low_complexity 5 69 0 824 274 115 13 chrX 1158184 1158498 -175815642 + MLT2F LTR ERVL 17 362 -301 3461 269 59 14 chrX 1158539 1159589 -175814551 + ERVL LTR ERVL 2644 3740 -2024 1198 220 4 4 chrX 1159654 1159895 -175814245 + ERVL LTR ERVL 4138 4378 -1386 1776 112 68 4 chrX 1160048 1160326 -175813814 + AluSc SINE Alu 1 296 -13 222 37 0 0 chrX 1161310 1161337 -175812803 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 2045 105 0 3 chrX 1161416 1161701 -175812439 - AluSx SINE Alu -5 307 24 1868 194 0 0 chrX 1162871 1163181 -175810959 - AluSx SINE Alu 0 312 3 204 40 0 0 chrX 1163373 1163398 -175810742 + (A)n Simple_repeat Simple_repeat 1 25 0 2334 93 0 10 chrX 1164863 1165173 -175808967 - AluSg1 SINE Alu -2 307 1 183 184 0 0 chrX 1165895 1165933 -175808207 + (CATATA)n Simple_repeat Simple_repeat 3 40 0 262 222 0 19 chrX 1167997 1168051 -175806089 + L2 LINE L2 3216 3268 -4 1857 169 0 10 chrX 1168228 1168542 -175805598 - AluJb SINE Alu -1 311 1 492 279 60 40 chrX 1168723 1168929 -175805211 + MIR SINE MIR 44 257 -5 2101 143 0 0 chrX 1169600 1169893 -175804247 - AluSq SINE Alu -19 294 2 190 236 132 47 chrX 1171928 1172034 -175802106 + MIR SINE MIR 31 145 -63 1037 173 0 6 chrX 1172412 1172585 -175801555 + AluJb SINE Alu 132 303 -9 2107 176 2 30 chrX 1172651 1173054 -175801086 + MLT2D LTR ERVL 10 401 -13 211 337 157 11 chrX 1174217 1174395 -175799745 - MIR SINE MIR -1 261 58 1949 164 3 0 chrX 1175063 1175368 -175798772 + AluJb SINE Alu 1 306 -6 531 247 34 22 chrX 1175556 1175734 -175798406 + MER104 DNA MER2_type 1 180 0 972 213 98 9 chrX 1175788 1176013 -175798127 - AluJo SINE Alu -44 268 24 361 242 8 94 chrX 1176222 1176350 -175797790 - MIR SINE MIR -71 191 75 2232 123 0 0 chrX 1176356 1176657 -175797483 + AluSq SINE Alu 1 301 -12 1874 156 10 0 chrX 1177283 1177578 -175796562 - AluJb SINE Alu -14 298 1 1814 135 0 48 chrX 1177799 1178112 -175796028 + AluSx SINE Alu 9 307 0 219 36 0 0 chrX 1179113 1179141 -175794999 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 228 297 144 25 chrX 1179141 1179259 -175794881 - MIR3 SINE MIR -62 146 15 2255 113 0 3 chrX 1179293 1179595 -175794545 + AluSx SINE Alu 1 301 -11 396 0 0 0 chrX 1180329 1180373 -175793767 + (TG)n Simple_repeat Simple_repeat 1 44 0 2191 93 0 4 chrX 1180373 1180653 -175793487 - AluSx SINE Alu -33 279 1 1141 104 46 20 chrX 1181175 1181492 -175792648 - THE1C LTR MaLR 0 375 1 2071 121 13 7 chrX 1181523 1181830 -175792310 + AluY SINE Alu 1 309 -2 235 273 143 0 chrX 1181833 1181910 -175792230 + MIR3 SINE MIR 120 207 -1 1748 170 3 7 chrX 1182493 1182787 -175791353 + AluJb SINE Alu 2 294 -18 25 31 0 0 chrX 1182983 1183015 -175791125 + AT_rich Low_complexity Low_complexity 1 32 0 2028 115 63 0 chrX 1183751 1184037 -175790103 + AluSg SINE Alu 1 304 -6 322 279 7 20 chrX 1184154 1184270 -175789870 + L1ME4a LINE L1 5778 5893 -228 1008 178 6 18 chrX 1184270 1184439 -175789701 + FAM SINE Alu 1 167 -8 322 279 7 20 chrX 1184439 1184469 -175789671 + L1ME4a LINE L1 5893 5922 -199 353 289 0 0 chrX 1184585 1184675 -175789465 - L1MC4 LINE L1 -1339 6703 6614 338 272 0 22 chrX 1184595 1184687 -175789453 + L1MC4 LINE L1 6614 6703 -1339 * 180 111 0 0 chrX 1184687 1184714 -175789426 + (TA)n Simple_repeat Simple_repeat 2 28 0 485 316 119 14 chrX 1184830 1185048 -175789092 - MIR SINE MIR -16 246 6 21 0 0 0 chrX 1185694 1185715 -175788425 + AT_rich Low_complexity Low_complexity 1 21 0 685 247 37 0 chrX 1186100 1186262 -175787878 + MER45A DNA AcHobo 6 173 -5 189 250 0 0 chrX 1186266 1186310 -175787830 - L2 LINE L2 -62 3251 3208 484 165 48 10 chrX 1186474 1186577 -175787563 + AluSq/x SINE Alu 1 107 -206 1086 157 0 12 chrX 1186764 1186936 -175787204 + AluSg/x SINE Alu 128 297 -15 2282 71 9 52 chrX 1187762 1188088 -175786052 + AluSx SINE Alu 1 312 0 1669 171 21 4 chrX 1189443 1189724 -175784416 - AluJb SINE Alu -26 286 1 1901 178 0 9 chrX 1191538 1191853 -175782287 - AluJo SINE Alu 0 312 1 2234 89 4 0 chrX 1192054 1192334 -175781806 - AluSq SINE Alu -32 281 1 797 258 40 74 chrX 1192462 1192842 -175781298 - L1MC4 LINE L1 -1865 5943 5577 286 196 72 21 chrX 1192854 1192951 -175781189 - L1MC4 LINE L1 -2300 5508 5407 2037 161 0 0 chrX 1193138 1193443 -175780697 + AluSx SINE Alu 1 305 -7 27 62 0 0 chrX 1193630 1193678 -175780462 + AT_rich Low_complexity Low_complexity 1 48 0 1821 182 3 6 chrX 1193893 1194265 -175779875 + AluJo SINE Alu 1 371 0 894 184 20 0 chrX 1194510 1194657 -175779483 + FRAM SINE Alu 1 146 -30 29 0 0 0 chrX 1194673 1194702 -175779438 + AT_rich Low_complexity Low_complexity 1 29 0 270 224 118 0 chrX 1194803 1194879 -175779261 - L2 LINE L2 -12 3301 3217 1613 154 0 0 chrX 1194879 1195125 -175779015 + AluSx SINE Alu 53 298 -14 2229 119 3 0 chrX 1195534 1195845 -175778295 + AluSx SINE Alu 1 312 0 23 0 0 0 chrX 1195958 1195981 -175778159 + AT_rich Low_complexity Low_complexity 1 23 0 2249 103 0 0 chrX 1196403 1196695 -175777445 + AluSx SINE Alu 1 292 -20 2338 86 10 0 chrX 1196695 1196998 -175777142 + AluSq SINE Alu 1 306 -7 2108 112 7 0 chrX 1197007 1197302 -175776838 + AluSg SINE Alu 1 297 -13 261 288 119 8 chrX 1197334 1197452 -175776688 + L2 LINE L2 3171 3301 -12 2132 132 24 0 chrX 1197454 1197750 -175776390 + AluSx SINE Alu 1 303 -9 2419 70 0 3 chrX 1198139 1198441 -175775699 + AluSc SINE Alu 2 302 -7 2065 135 0 0 chrX 1198445 1198754 -175775386 + AluSx SINE Alu 1 309 0 725 194 8 0 chrX 1198890 1199019 -175775121 + FLAM_A SINE Alu 1 130 -3 1871 132 0 31 chrX 1200627 1200914 -175773226 + AluSx SINE Alu 1 278 -34 254 96 0 19 chrX 1200917 1200969 -175773171 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 1754 82 16 4 chrX 1201108 1201352 -175772788 + L1PA7 LINE L1 5905 6151 -3 206 189 11 137 chrX 1201449 1201544 -175772596 + MIR SINE MIR 170 252 -10 21 71 0 0 chrX 1201877 1201919 -175772221 + AT_rich Low_complexity Low_complexity 1 42 0 2011 152 7 7 chrX 1202281 1202590 -175771550 + AluSx SINE Alu 3 311 -1 250 305 42 0 chrX 1204060 1204155 -175769985 - L2 LINE L2 -927 2387 2289 203 315 62 88 chrX 1204164 1204236 -175769904 - L2 LINE L2 -1320 1994 1922 1779 178 3 0 chrX 1204236 1204534 -175769606 - AluSx SINE Alu 0 312 14 203 315 62 88 chrX 1204534 1204848 -175769292 - L2 LINE L2 -1392 1922 1618 2157 102 20 0 chrX 1205302 1205607 -175768533 + AluSx SINE Alu 1 311 -1 24 0 0 0 chrX 1205669 1205693 -175768447 + AT_rich Low_complexity Low_complexity 1 24 0 2310 89 0 3 chrX 1205816 1206118 -175768022 + AluY SINE Alu 1 301 -10 2195 132 3 0 chrX 1206323 1206633 -175767507 - AluSx SINE Alu -1 311 1 2049 127 0 0 chrX 1207380 1207699 -175766441 - AluSx SINE Alu 0 319 1 924 161 86 0 chrX 1207868 1208042 -175766098 - MER46A DNA MER2_type 0 236 48 2274 97 0 7 chrX 1208205 1208503 -175765637 - AluSg SINE Alu -14 296 1 2328 89 3 3 chrX 1208776 1209080 -175765060 + AluSg SINE Alu 1 304 -6 307 190 0 0 chrX 1209081 1209139 -175765001 - MER46A DNA MER2_type -178 58 1 286 193 0 0 chrX 1209091 1209148 -175764992 + MER46A DNA MER2_type 97 153 -83 * 27 49 0 0 chrX 1209330 1209371 -175764769 + AT_rich Low_complexity Low_complexity 1 41 0 24 0 0 0 chrX 1209592 1209616 -175764524 + AT_rich Low_complexity Low_complexity 1 24 0 1946 143 3 16 chrX 1209819 1210133 -175764007 + AluJb SINE Alu 3 312 0 38 0 0 0 chrX 1210328 1210366 -175763774 + AT_rich Low_complexity Low_complexity 1 38 0 1586 99 19 0 chrX 1210366 1210578 -175763562 - AluSg/x SINE Alu -15 295 80 1391 165 0 35 chrX 1210578 1210832 -175763308 + AluJo SINE Alu 67 311 -1 1559 159 10 51 chrX 1210965 1211145 -175762995 - AluJb SINE Alu 0 316 152 2208 106 0 3 chrX 1211145 1211437 -175762703 - AluY SINE Alu -20 291 1 1559 159 10 51 chrX 1211437 1211584 -175762556 - AluJb SINE Alu -164 152 1 884 200 22 0 chrX 1211971 1212156 -175761984 + L1MC4 LINE L1 6815 7003 -1039 * 2307 221 88 56 chrX 1212153 1212265 -175761875 + L1MC3 LINE L1 6188 6295 -1490 1977 127 3 11 chrX 1212265 1212585 -175761555 + AluSx SINE Alu 1 318 0 2307 221 88 56 chrX 1212585 1212874 -175761266 + L1MC3 LINE L1 6295 6573 -1212 195 42 0 0 chrX 1212874 1212898 -175761242 + (TAGA)n Simple_repeat Simple_repeat 3 26 0 2307 221 88 56 chrX 1212898 1213265 -175760875 + L1MC3 LINE L1 6573 6992 -793 1814 150 56 0 chrX 1213265 1213552 -175760588 - AluSx SINE Alu -9 303 1 2307 221 88 56 chrX 1213552 1213666 -175760474 + L1MC3 LINE L1 6992 7101 -684 374 241 0 11 chrX 1213666 1213753 -175760387 + MLT1F1 LTR MaLR 40 125 -442 651 206 25 25 chrX 1213754 1213914 -175760226 + L1MD3 LINE L1 7404 7563 -432 416 154 86 26 chrX 1214063 1214180 -175759960 + L1MC4 LINE L1 7918 8041 -1 1464 208 54 17 chrX 1214211 1214509 -175759631 - AluJo SINE Alu -3 309 1 1752 173 0 46 chrX 1214575 1214898 -175759242 - AluJo SINE Alu -4 308 1 949 158 99 0 chrX 1214900 1215122 -175759018 + L1MCa LINE L1 2158 2401 -4025 332 357 66 63 chrX 1215529 1215665 -175758475 - L2 LINE L2 -18 3254 3120 2091 127 0 31 chrX 1215665 1215987 -175758153 + AluSx SINE Alu 1 312 0 332 357 66 63 chrX 1215987 1216197 -175757943 - L2 LINE L2 -152 3120 2907 510 152 181 0 chrX 1216728 1216833 -175757307 + FLAM_C SINE Alu 3 126 -17 44 0 0 0 chrX 1216833 1216877 -175757263 + AT_rich Low_complexity Low_complexity 1 44 0 2314 98 0 3 chrX 1217820 1218125 -175756015 + AluSg SINE Alu 1 304 -6 249 56 0 0 chrX 1218299 1218335 -175755805 - AluJo SINE Alu -9 291 256 240 268 78 20 chrX 1218533 1218686 -175755454 + L1MC5 LINE L1 7503 7664 -297 1528 204 4 0 chrX 1218742 1219002 -175755138 - AluJo SINE Alu -49 263 3 21 0 0 0 chrX 1219203 1219224 -175754916 + AT_rich Low_complexity Low_complexity 1 21 0 21 71 0 0 chrX 1220270 1220312 -175753828 + AT_rich Low_complexity Low_complexity 1 42 0 294 241 113 0 chrX 1220404 1220545 -175753595 + L1ME LINE L1 5629 5785 -336 1016 174 23 46 chrX 1220559 1220777 -175753363 - AluJo SINE Alu -5 307 95 2337 97 3 0 chrX 1220808 1221107 -175753033 + AluSp SINE Alu 1 300 -13 2222 129 0 3 chrX 1221107 1221418 -175752722 + AluSx SINE Alu 1 310 -2 1927 142 7 0 chrX 1221427 1221752 -175752388 + AluSx SINE Alu 1 327 0 1611 201 4 4 chrX 1222145 1222424 -175751716 + AluJb SINE Alu 13 291 -21 297 0 0 0 chrX 1222425 1222439 -175751701 + (TG)n Simple_repeat Simple_repeat 1 47 0 297 0 0 0 chrX 1222439 1222472 -175751668 + (TG)n Simple_repeat Simple_repeat 2 34 0 2270 106 3 0 chrX 1222658 1222961 -175751179 + AluSp SINE Alu 1 304 -9 234 233 67 58 chrX 1223231 1223351 -175750789 + L1ME LINE L1 5705 5825 -296 752 149 0 37 chrX 1223379 1223513 -175750627 - FLAM_C SINE Alu -1 142 14 252 0 0 0 chrX 1223527 1223555 -175750585 + (TA)n Simple_repeat Simple_repeat 2 29 0 2315 84 10 3 chrX 1223555 1223854 -175750286 - AluSq SINE Alu -9 304 4 1345 233 89 83 chrX 1224019 1224949 -175749191 + L1ME3 LINE L1 4337 5275 -871 2215 122 0 0 chrX 1224949 1225244 -175748896 + AluSx SINE Alu 1 295 -17 1345 233 89 83 chrX 1225244 1225285 -175748855 + L1ME3 LINE L1 5275 5314 -832 558 266 125 41 chrX 1225282 1225451 -175748689 + L1ME3 LINE L1 5677 5830 -332 * 2407 93 0 3 chrX 1225451 1225762 -175748378 + AluSg SINE Alu 1 310 0 558 266 125 41 chrX 1225762 1226032 -175748108 + L1ME3 LINE L1 5830 6153 -9 2086 124 34 47 chrX 1226431 1226811 -175747329 - THE1C LTR MaLR 0 375 1 23 33 0 0 chrX 1227406 1227436 -175746704 + AT_rich Low_complexity Low_complexity 1 30 0 2321 92 0 7 chrX 1227669 1227975 -175746165 + AluY SINE Alu 1 304 -7 808 129 0 64 chrX 1228182 1228322 -175745818 - FLAM_C SINE Alu 0 133 3 271 313 133 0 chrX 1228963 1229113 -175745027 - L2 LINE L2 -207 3065 2896 2459 84 0 0 chrX 1229254 1229564 -175744576 + AluY SINE Alu 1 310 -1 307 244 33 22 chrX 1229572 1229662 -175744478 - L1MC4 LINE L1 -1340 6702 6612 905 79 28 11 chrX 1229681 1229858 -175744282 + (TA)n Simple_repeat Simple_repeat 1 180 0 838 176 59 26 chrX 1229956 1230109 -175744031 + FAM SINE Alu 1 158 -17 1250 179 122 4 chrX 1230266 1230383 -175743757 + AluJo SINE Alu 1 103 -209 222 62 0 0 chrX 1230383 1230415 -175743725 + (CAAAA)n Simple_repeat Simple_repeat 3 34 0 1250 179 122 4 chrX 1230415 1230559 -175743581 + AluJo SINE Alu 103 293 -19 389 289 132 0 chrX 1230854 1231013 -175743127 - MIR SINE MIR -12 250 71 288 77 0 0 chrX 1231780 1231819 -175742321 + (TA)n Simple_repeat Simple_repeat 1 39 0 2384 67 3 7 chrX 1231819 1232118 -175742022 - AluY SINE Alu -13 298 1 2104 110 3 7 chrX 1232725 1232901 -175741239 - AluSc SINE Alu -11 298 122 216 0 0 0 chrX 1232901 1232925 -175741215 + (TG)n Simple_repeat Simple_repeat 2 25 0 2104 110 3 7 chrX 1232925 1233047 -175741093 - AluSc SINE Alu -187 122 1 2421 74 0 6 chrX 1233432 1233744 -175740396 + AluY SINE Alu 1 310 -1 31 26 0 0 chrX 1233850 1233888 -175740252 + AT_rich Low_complexity Low_complexity 1 38 0 965 147 0 0 chrX 1234605 1234748 -175739392 + U4 snRNA snRNA 2 144 -1 31 0 0 0 chrX 1234751 1234782 -175739358 + AT_rich Low_complexity Low_complexity 1 31 0 1297 167 10 68 chrX 1234792 1235103 -175739037 + AluJo SINE Alu 11 303 -9 2183 132 0 3 chrX 1235962 1236273 -175737867 - AluSx SINE Alu -2 310 1 2299 94 3 0 chrX 1236458 1236755 -175737385 + AluSp SINE Alu 5 302 -11 219 362 106 0 chrX 1236769 1236863 -175737277 + L2 LINE L2 3154 3257 -15 2487 44 0 10 chrX 1237466 1237762 -175736378 - AluY SINE Alu -17 294 2 1422 128 128 12 chrX 1238193 1238442 -175735698 - AluSg1 SINE Alu -11 298 21 2228 79 4 0 chrX 1238685 1238964 -175735176 + AluSg SINE Alu 1 280 -30 2187 107 7 0 chrX 1242420 1242711 -175731429 - AluSq SINE Alu -20 293 1 1174 223 20 46 chrX 1243547 1243942 -175730198 + L1ME1 LINE L1 5738 6122 -44 457 62 0 0 chrX 1244195 1244260 -175729880 + L1PB3 LINE L1 6082 6146 -8 187 75 0 50 chrX 1244375 1244415 -175729725 + (TATAA)n Simple_repeat Simple_repeat 3 40 0 276 355 64 35 chrX 1244418 1244762 -175729378 - L2 LINE L2 -739 2575 2222 2324 97 0 28 chrX 1245470 1245789 -175728351 - AluY SINE Alu -1 310 1 2228 79 4 0 chrX 1246127 1246406 -175727734 + AluSg SINE Alu 1 280 -30 2247 110 3 0 chrX 1249862 1250154 -175723986 - AluSp SINE Alu -20 293 1 499 192 111 0 chrX 1250221 1250320 -175723820 - FLAM_A SINE Alu -8 134 25 1911 87 45 42 chrX 1250717 1251005 -175723135 + AluY SINE Alu 1 289 -22 341 23 0 0 chrX 1252508 1252551 -175721589 - U3 snRNA snRNA -174 43 1 353 290 55 19 chrX 1253422 1253539 -175720601 + MER5A DNA MER1_type 14 130 -48 468 233 92 137 chrX 1254469 1254783 -175719357 + L2 LINE L2 2966 3265 -48 1423 123 22 148 chrX 1254790 1254916 -175719224 + AluYb8 SINE Alu 12 152 -161 2417 40 0 33 chrX 1254916 1255218 -175718922 + AluY SINE Alu 1 292 -19 1423 123 22 148 chrX 1255218 1255433 -175718707 + AluYb8 SINE Alu 152 313 0 23 0 0 0 chrX 1256316 1256339 -175717801 + AT_rich Low_complexity Low_complexity 1 23 0 849 158 0 0 chrX 1257024 1257151 -175716989 - FLAM_C SINE Alu -5 128 2 23 33 0 0 chrX 1257162 1257192 -175716948 + AT_rich Low_complexity Low_complexity 1 30 0 1094 109 0 0 chrX 1261829 1261985 -175712155 - AluSq SINE Alu -12 301 146 262 98 0 0 chrX 1261985 1262026 -175712114 - Alu SINE Alu -261 41 1 2055 129 3 0 chrX 1263951 1264246 -175709894 + AluSx SINE Alu 1 296 -16 1036 209 5 0 chrX 1264271 1264462 -175709678 + AluJo SINE Alu 6 197 -115 183 80 0 0 chrX 1264464 1264489 -175709651 + (A)n Simple_repeat Simple_repeat 1 25 0 203 211 211 0 chrX 1265664 1265716 -175708424 - L2 LINE L2 0 3313 3251 2392 88 3 0 chrX 1265878 1266184 -175707956 + AluSx SINE Alu 1 307 -5 2189 95 0 7 chrX 1266355 1266649 -175707491 - AluSq SINE Alu -21 292 1 540 180 72 0 chrX 1267464 1267575 -175706565 - MLT2B2 LTR ERVL -396 119 1 2195 101 3 3 chrX 1267583 1267881 -175706259 - AluSg SINE Alu -12 298 1 27 0 0 26 chrX 1268031 1268046 -175706094 + AT_rich Low_complexity Low_complexity 1 15 -22 1309 133 58 0 chrX 1268046 1268286 -175705854 - L1MA4 LINE L1 -11 6289 6036 27 0 0 26 chrX 1268286 1268308 -175705832 + AT_rich Low_complexity Low_complexity 15 37 0 2271 53 60 3 chrX 1268341 1268624 -175705516 - AluY SINE Alu -12 299 1 352 128 13 26 chrX 1268628 1268706 -175705434 - L1MA4 LINE L1 -249 6051 5975 278 130 0 0 chrX 1268706 1268752 -175705388 + L1 LINE L1 5193 5238 -908 613 139 11 2 chrX 1268839 1268963 -175705177 - L1MA4A LINE L1 -339 5966 5842 18888 87 2 10 chrX 1269126 1269737 -175704403 - L1PA7 LINE L1 -68 6086 5472 2075 135 3 0 chrX 1269737 1270034 -175704106 - AluSg1 SINE Alu -11 298 1 18888 87 2 10 chrX 1270034 1272853 -175701287 - L1PA7 LINE L1 -682 5472 2684 2340 86 7 7 chrX 1273009 1273312 -175700828 - AluSc SINE Alu -6 303 1 634 177 32 0 chrX 1273312 1273436 -175700704 - L1MC3 LINE L1 -1081 6704 6577 * 2260 187 11 2 chrX 1273433 1273866 -175700274 - L1MC3 LINE L1 -1098 6687 6251 196 337 30 20 chrX 1275124 1275225 -175698915 - L3 LINE CR1 -211 1366 1265 21 82 0 0 chrX 1275262 1275311 -175698829 + AT_rich Low_complexity Low_complexity 1 49 0 812 293 19 34 chrX 1275743 1276006 -175698134 + MIR SINE MIR 1 259 -3 2397 70 3 20 chrX 1276519 1276821 -175697319 - AluSp SINE Alu -16 297 1 1720 173 3 3 chrX 1277076 1277360 -175696780 + AluJo SINE Alu 13 296 -16 21 36 0 0 chrX 1279461 1279489 -175694651 + AT_rich Low_complexity Low_complexity 1 28 0 389 195 0 0 chrX 1279680 1279762 -175694378 - L1MA9 LINE L1 -22 6290 6209 1202 259 108 75 chrX 1280536 1281333 -175692807 - HAL1 LINE L1 -13 2494 1672 192 77 0 0 chrX 1281355 1281381 -175692759 + (T)n Simple_repeat Simple_repeat 1 26 0 381 311 39 34 chrX 1281409 1281766 -175692374 - HAL1 LINE L1 -1115 1392 1034 679 256 38 0 chrX 1281772 1281932 -175692208 + MLT1F1 LTR MaLR 395 560 -7 1698 185 14 0 chrX 1282325 1282612 -175691528 + AluJb SINE Alu 1 291 -21 29 28 0 0 chrX 1282784 1282820 -175691320 + AT_rich Low_complexity Low_complexity 1 36 0 646 178 0 0 chrX 1282820 1282921 -175691219 - U6 snRNA snRNA -6 101 1 479 303 106 14 chrX 1283116 1283324 -175690816 - MIR SINE MIR -15 247 21 1972 138 21 55 chrX 1283369 1283754 -175690386 + THE1C LTR MaLR 1 372 -3 407 276 33 62 chrX 1284327 1284602 -175689538 + L1ME3A LINE L1 5702 5968 -202 295 268 45 67 chrX 1284858 1285037 -175689103 - HAL1 LINE L1 0 2507 2333 42 20 0 0 chrX 1285037 1285086 -175689054 + AT_rich Low_complexity Low_complexity 1 49 0 727 124 62 9 chrX 1285087 1285200 -175688940 - FLAM_C SINE Alu -14 119 1 1104 267 93 30 chrX 1285200 1285740 -175688400 - HAL1 LINE L1 -160 2347 1774 257 286 118 0 chrX 1285742 1285861 -175688279 - L2 LINE L2 -5 3308 3176 1192 278 34 37 chrX 1286036 1286712 -175687428 - L2 LINE L2 -229 3084 2199 437 208 113 0 chrX 1287252 1287358 -175686782 - HAL1 LINE L1 -2384 123 6 345 333 50 33 chrX 1288143 1288263 -175685877 + L2 LINE L2 3122 3243 -29 378 312 74 72 chrX 1288674 1289065 -175685075 - HAL1 LINE L1 -2 2505 2114 865 263 107 12 chrX 1289195 1289541 -175684599 - L1ME4a LINE L1 -238 5883 5505 2427 87 0 0 chrX 1290017 1290317 -175683823 - AluSg SINE Alu -10 300 1 2202 119 0 7 chrX 1291289 1291599 -175682541 + AluSg SINE Alu 1 308 -2 259 303 0 34 chrX 1292075 1292164 -175681976 + L2 LINE L2 44 129 -3185 * 715 255 242 7 chrX 1292158 1292456 -175681684 + L2 LINE L2 2946 3313 0 746 360 22 0 chrX 1292677 1292988 -175681152 + HAL1 LINE L1 2 319 -2188 418 292 167 51 chrX 1293009 1293299 -175680841 + HAL1 LINE L1 436 772 -1735 1785 292 72 20 chrX 1293299 1293894 -175680246 + MLT2E LTR ERVL 1 626 -2 418 292 167 51 chrX 1293894 1293939 -175680201 + HAL1 LINE L1 772 810 -1697 1555 255 134 21 chrX 1293980 1294795 -175679345 + HAL1 LINE L1 967 1873 -634 568 233 12 6 chrX 1294810 1294982 -175679158 + (CATA)n Simple_repeat Simple_repeat 4 176 0 288 287 271 0 chrX 1295078 1295200 -175678940 + HAL1 LINE L1 621 775 -1732 317 262 19 10 chrX 1295269 1295372 -175678768 - L1MC4 LINE L1 -1328 6714 6611 23 0 0 0 chrX 1295405 1295428 -175678712 + AT_rich Low_complexity Low_complexity 1 23 0 836 314 66 39 chrX 1295892 1295909 -175678231 + HAL1 LINE L1 1468 1483 -1024 2168 112 0 3 chrX 1295909 1296241 -175677899 - AluSq SINE Alu 0 332 2 836 314 66 39 chrX 1296241 1296690 -175677450 + HAL1 LINE L1 1483 1948 -559 326 253 89 55 chrX 1296724 1296926 -175677214 + LTR33A LTR ERVL 3 211 -312 1803 181 13 0 chrX 1296933 1297236 -175676904 - AluJb SINE Alu -5 307 1 233 212 25 59 chrX 1298355 1298473 -175675667 + (TCTCTG)n Simple_repeat Simple_repeat 2 115 0 565 217 8 8 chrX 1300079 1300208 -175673932 + L1M4 LINE L1 5340 5468 -710 664 166 93 20 chrX 1300208 1300359 -175673781 - MLT1D LTR MaLR 0 505 344 * 781 191 42 24 chrX 1300348 1300516 -175673624 - MSTA LTR MaLR -43 385 215 21 0 0 0 chrX 1300605 1300626 -175673514 + AT_rich Low_complexity Low_complexity 1 21 0 2115 125 0 3 chrX 1300664 1300961 -175673179 + AluSg SINE Alu 1 296 -14 21 0 0 0 chrX 1301021 1301042 -175673098 + AT_rich Low_complexity Low_complexity 1 21 0 215 286 0 0 chrX 1302107 1302163 -175671977 - MIR SINE MIR -121 141 86 233 316 35 11 chrX 1302999 1303112 -175671028 - MIR SINE MIR -74 134 15 423 204 18 26 chrX 1304011 1304124 -175670016 + MER31A LTR ERV1 346 457 -28 2391 57 3 7 chrX 1304149 1304446 -175669694 - AluY SINE Alu -15 296 1 300 188 0 0 chrX 1304495 1304559 -175669581 + (CATATA)n Simple_repeat Simple_repeat 3 66 0 357 248 0 0 chrX 1304618 1304731 -175669409 + (TA)n Simple_repeat Simple_repeat 2 114 0 453 259 54 32 chrX 1305113 1305298 -175668842 + MIR SINE MIR 68 256 -6 1867 181 3 3 chrX 1305626 1305935 -175668205 + AluJo SINE Alu 1 309 -3 2216 125 6 3 chrX 1306264 1306575 -175667565 - AluSx SINE Alu 0 312 1 890 125 0 0 chrX 1306626 1306762 -175667378 - L1PA16 LINE L1 -5 6161 6026 692 269 58 66 chrX 1306946 1307311 -175666829 - LTR16A1 LTR ERVL -45 412 51 181 62 0 94 chrX 1307499 1307531 -175666609 - MIR SINE MIR -5 257 229 2684 107 65 2 chrX 1307654 1308067 -175666073 - MLT2A2 LTR ERVL 0 453 15 2337 91 3 7 chrX 1308560 1308868 -175665272 + AluSq SINE Alu 1 307 -6 270 179 0 15 chrX 1308868 1308935 -175665205 - L1ME LINE L1 -2413 3667 3602 1541 188 15 4 chrX 1309003 1309274 -175664866 - AluJo SINE Alu -2 310 37 2207 131 0 0 chrX 1309300 1309597 -175664543 - AluSg SINE Alu -13 297 1 2996 253 63 59 chrX 1309597 1310051 -175664089 - L1ME LINE L1 -2581 3499 3048 2318 85 0 3 chrX 1310051 1310346 -175663794 - AluSg SINE Alu -16 294 1 1802 174 17 3 chrX 1310346 1310640 -175663500 - AluSx SINE Alu -14 298 1 2996 253 63 59 chrX 1310640 1310739 -175663401 - L1ME LINE L1 -3032 3048 2951 562 193 0 90 chrX 1310739 1310884 -175663256 - FLAM_C SINE Alu -1 132 1 2996 253 63 59 chrX 1310884 1310952 -175663188 - L1ME LINE L1 -3129 2951 2885 2149 128 3 0 chrX 1310952 1311248 -175662892 - AluSx SINE Alu -15 297 1 2996 253 63 59 chrX 1311248 1311787 -175662353 - L1ME LINE L1 -3195 2885 2350 646 209 8 8 chrX 1311787 1311916 -175662224 - FLAM_A SINE Alu -4 129 1 2996 253 63 59 chrX 1311916 1312178 -175661962 - L1ME LINE L1 -3730 2350 2091 2062 140 0 0 chrX 1312178 1312470 -175661670 - AluSg SINE Alu -18 292 1 2996 253 63 59 chrX 1312470 1313069 -175661071 - L1ME LINE L1 -3989 2091 1496 2050 136 67 43 chrX 1313069 1313116 -175661024 - MSTA LTR MaLR 0 428 384 1945 137 0 59 chrX 1313116 1313438 -175660702 + AluJb SINE Alu 6 308 -4 2050 136 67 43 chrX 1313438 1313808 -175660332 - MSTA LTR MaLR -44 384 1 2996 253 63 59 chrX 1313808 1314233 -175659907 - L1ME LINE L1 -4584 1496 1074 2458 65 0 0 chrX 1314233 1314527 -175659613 + AluY SINE Alu 1 294 -17 2996 253 63 59 chrX 1314527 1314970 -175659170 - L1ME LINE L1 -5006 1074 566 1040 289 63 47 chrX 1315524 1315578 -175658562 - L1ME LINE L1 -5553 517 465 1726 176 28 0 chrX 1315578 1315868 -175658272 - AluJb SINE Alu -14 298 1 1040 289 63 47 chrX 1315868 1316322 -175657818 - L1ME LINE L1 -5605 465 1 302 275 44 11 chrX 1316722 1316813 -175657327 - MIR SINE MIR -61 201 108 22 56 0 0 chrX 1317128 1317164 -175656976 + AT_rich Low_complexity Low_complexity 1 36 0 730 244 36 50 chrX 1317239 1317292 -175656848 + MER58A DNA MER1_type 6 58 -2362 495 87 0 0 chrX 1317292 1317361 -175656779 + (CTATT)n Simple_repeat Simple_repeat 3 71 0 730 244 36 50 chrX 1317361 1317397 -175656743 + MER58A DNA MER1_type 58 93 -2327 2480 50 3 0 chrX 1317397 1317699 -175656441 - AluY SINE Alu -8 303 1 730 244 36 50 chrX 1317699 1317829 -175656311 + MER58A DNA MER1_type 93 223 -1 2431 93 0 3 chrX 1318304 1318614 -175655526 - AluSx SINE Alu -3 309 1 1655 207 0 14 chrX 1318623 1318986 -175655154 + L1MA7 LINE L1 4727 5084 -1062 301 68 0 68 chrX 1318990 1319049 -175655091 + (TG)n Simple_repeat Simple_repeat 1 55 0 928 197 5 5 chrX 1319054 1319247 -175654893 - MER58 DNA MER1_type -2217 203 11 4091 149 22 61 chrX 1319247 1319306 -175654834 + L1MA7 LINE L1 5080 5140 -1151 1801 189 3 3 chrX 1319306 1319612 -175654528 + AluJo SINE Alu 1 306 -6 4091 149 22 61 chrX 1319612 1320158 -175653982 + L1MA7 LINE L1 5140 5626 -665 695 110 0 0 chrX 1320158 1320258 -175653882 + HY3 scRNA scRNA 1 100 -1 4091 149 22 61 chrX 1320258 1320782 -175653358 + L1MA7 LINE L1 5626 6169 -122 894 181 7 0 chrX 1320782 1320926 -175653214 + AluJb SINE Alu 134 278 -34 648 155 35 21 chrX 1320926 1320942 -175653198 + L1MA5 LINE L1 6155 6169 -131 375 23 0 0 chrX 1320942 1320986 -175653154 + (TA)n Simple_repeat Simple_repeat 2 45 0 648 155 35 21 chrX 1320986 1321111 -175653029 + L1MA5 LINE L1 6169 6298 -2 22 56 0 0 chrX 1321111 1321147 -175652993 + AT_rich Low_complexity Low_complexity 1 36 0 28 0 0 0 chrX 1321349 1321377 -175652763 + AT_rich Low_complexity Low_complexity 1 28 0 30 59 0 0 chrX 1321775 1321826 -175652314 + AT_rich Low_complexity Low_complexity 1 51 0 3770 169 9 28 chrX 1321938 1322089 -175652051 - L1M1 LINE L1 -677 5628 5476 3440 107 62 65 chrX 1322089 1322754 -175651386 + MER4A LTR ERV1 2 664 0 3770 169 9 28 chrX 1322754 1322876 -175651264 - L1M1 LINE L1 -829 5476 5353 1852 165 3 3 chrX 1322876 1323173 -175650967 - AluJb SINE Alu -15 297 1 3770 169 9 28 chrX 1323173 1324069 -175650071 - L1M1 LINE L1 -952 5353 4474 1190 201 5 18 chrX 1324873 1325092 -175649048 + MER20 DNA MER1_type 2 217 -2 1615 206 7 0 chrX 1325097 1325403 -175648737 + AluJo SINE Alu 1 308 -4 2381 101 0 0 chrX 1325804 1326111 -175648029 - AluSq SINE Alu -6 307 1 345 327 74 31 chrX 1326300 1326362 -175647778 + MIR SINE MIR 71 129 -133 459 0 0 0 chrX 1326362 1326413 -175647727 + (TA)n Simple_repeat Simple_repeat 2 52 0 345 327 74 31 chrX 1326413 1326512 -175647628 + MIR SINE MIR 129 239 -23 2413 97 3 0 chrX 1327148 1327456 -175646684 + AluSx SINE Alu 1 309 -3 639 259 47 19 chrX 1327578 1327790 -175646350 + HsTC2 DNA Tc2 1521 1738 -160 1050 191 57 0 chrX 1327819 1328013 -175646127 - AluJo SINE Alu -16 296 92 22 0 0 0 chrX 1328492 1328514 -175645626 + AT_rich Low_complexity Low_complexity 1 22 0 1738 201 61 27 chrX 1329420 1329862 -175644278 - LTR2B LTR ERV1 0 490 34 2665 104 60 29 chrX 1330274 1330821 -175643319 + MER4A LTR ERV1 1 663 -1 340 232 0 32 chrX 1330825 1330920 -175643220 + MLT1K LTR MaLR 346 437 -151 10372 160 25 36 chrX 1331271 1333529 -175640611 - L1P LINE L1 -3314 2832 600 5458 163 59 31 chrX 1333531 1334325 -175639815 - L1 LINE L1 -1653 4493 3723 423 0 0 0 chrX 1334325 1334372 -175639768 + (TG)n Simple_repeat Simple_repeat 2 48 0 5458 163 59 31 chrX 1334372 1334831 -175639309 - L1 LINE L1 -2423 3723 3199 1484 196 0 29 chrX 1334831 1335137 -175639003 - AluJb SINE Alu -4 308 12 5458 163 59 31 chrX 1335137 1335203 -175638937 - L1 LINE L1 -2947 3199 3136 941 204 12 0 chrX 1335204 1335376 -175638764 - AluJb SINE Alu -10 302 129 2348 101 0 25 chrX 1335487 1335805 -175638335 - AluY SINE Alu -1 310 1 656 311 144 3 chrX 1335924 1336223 -175637917 + MLT1J LTR MaLR 1 341 -170 2403 88 0 3 chrX 1336491 1336799 -175637341 + AluSx SINE Alu 1 307 -5 2210 120 0 0 chrX 1337099 1337400 -175636740 + AluSg SINE Alu 1 301 -9 2671 222 69 25 chrX 1337728 1338499 -175635641 - MER45B DNA AcHobo 0 1040 236 525 244 15 7 chrX 1338534 1338669 -175635471 - MER45B DNA AcHobo -900 140 5 570 279 113 33 chrX 1338673 1339215 -175634925 + L1MC5 LINE L1 7330 7914 -47 25 0 0 0 chrX 1339247 1339272 -175634868 + AT_rich Low_complexity Low_complexity 1 25 0 193 263 26 26 chrX 1340514 1340590 -175633550 - MIR SINE MIR 0 262 187 730 287 20 0 chrX 1340848 1341050 -175633090 - LTR16A LTR ERVL -12 438 233 331 290 81 0 chrX 1341291 1341477 -175632663 - L1MEc LINE L1 -3940 2456 2256 25 31 0 0 chrX 1341574 1341606 -175632534 + AT_rich Low_complexity Low_complexity 1 32 0 778 218 0 0 chrX 1341702 1341835 -175632305 + FLAM_A SINE Alu 1 133 0 449 259 57 69 chrX 1342110 1342372 -175631768 + MER20B DNA MER1_type 23 281 -502 782 222 96 9 chrX 1342472 1342702 -175631438 + MER20B DNA MER1_type 273 522 -261 24 0 0 0 chrX 1343968 1343992 -175630148 + AT_rich Low_complexity Low_complexity 1 24 0 2321 97 3 0 chrX 1344668 1344968 -175629172 - AluSx SINE Alu -6 306 6 248 383 58 8 chrX 1344970 1345090 -175629050 + L2 LINE L2 3147 3272 0 25 31 0 0 chrX 1345171 1345203 -175628937 + AT_rich Low_complexity Low_complexity 1 32 0 242 258 32 0 chrX 1345246 1345308 -175628832 - MIR SINE MIR -79 183 120 276 329 0 0 chrX 1345382 1345455 -175628685 - MIR SINE MIR -102 106 34 2340 38 41 10 chrX 1346326 1346618 -175627522 - AluY SINE Alu -10 301 1 200 59 29 0 chrX 1346984 1347018 -175627122 + (TAAAAA)n Simple_repeat Simple_repeat 2 36 0 384 311 12 42 chrX 1347037 1347204 -175626936 - MER5A DNA MER1_type -11 178 17 2581 74 0 0 chrX 1347240 1347551 -175626589 + AluY SINE Alu 1 311 0 2392 101 0 0 chrX 1347822 1348129 -175626011 + AluSg SINE Alu 1 307 -3 714 230 35 71 chrX 1348604 1348734 -175625406 - MER58A DNA MER1_type -2197 223 90 2455 47 3 0 chrX 1348734 1349031 -175625109 + AluY SINE Alu 1 298 -13 714 230 35 71 chrX 1349031 1349072 -175625068 - MER58A DNA MER1_type -2330 90 49 495 87 0 0 chrX 1349072 1349141 -175624999 + (AATAG)n Simple_repeat Simple_repeat 3 71 0 714 230 35 71 chrX 1349141 1349194 -175624946 - MER58A DNA MER1_type -2371 49 6 22 56 0 0 chrX 1349269 1349305 -175624835 + AT_rich Low_complexity Low_complexity 1 36 0 302 275 44 11 chrX 1349620 1349711 -175624429 + MIR SINE MIR 108 201 -61 943 307 71 18 chrX 1350111 1350560 -175623580 + L1ME LINE L1 1 473 -5597 1084 171 11 0 chrX 1350565 1350741 -175623399 + AluJb SINE Alu 1 178 -134 1404 165 5 22 chrX 1552325 1552549 -175421591 + AluJo SINE Alu 1 220 -92 724 205 118 46 chrX 1552549 1552744 -175421396 + AluJo SINE Alu 86 294 -18 314 121 0 17 chrX 1552744 1552802 -175421338 + (GGA)n Simple_repeat Simple_repeat 1 57 0 472 313 166 22 chrX 1553256 1553611 -175420529 - L2 LINE L2 -2 3311 2906 1598 182 32 50 chrX 1553805 1554206 -175419934 + L1MB5 LINE L1 5667 6060 -114 256 61 0 0 chrX 1554210 1554243 -175419897 + U2 snRNA snRNA 1 33 -155 239 293 52 9 chrX 1554243 1554359 -175419781 + L1MB7 LINE L1 6049 6169 -15 188 257 15 125 chrX 1554952 1555088 -175419052 + MIR3 SINE MIR 37 157 -51 213 213 0 0 chrX 1555171 1555218 -175418922 + (CA)n Simple_repeat Simple_repeat 2 48 0 778 169 4 146 chrX 1555225 1555313 -175418827 - MER82 DNA MER2_type -218 435 336 1534 173 0 104 chrX 1555313 1555648 -175418492 + AluJo SINE Alu 1 300 -2 778 169 4 146 chrX 1555648 1555820 -175418320 - MER82 DNA MER2_type -317 336 212 2295 96 8 22 chrX 1555871 1556236 -175417904 + L1PB1 LINE L1 5712 6071 -80 692 179 19 13 chrX 1556262 1556418 -175417722 + L1MB3 LINE L1 6020 6176 -7 2591 71 0 0 chrX 1556725 1557036 -175417104 - AluY SINE Alu 0 311 1 1974 171 14 8 chrX 1557737 1558100 -175416040 - MLT1A1 LTR MaLR 0 365 1 2060 129 20 0 chrX 1558125 1558419 -175415721 + AluSx SINE Alu 1 300 -12 2237 97 0 13 chrX 1558419 1558717 -175415423 + AluSc SINE Alu 1 294 -15 2782 238 14 3 chrX 1559366 1559988 -175414152 - MER82 DNA MER2_type -1 652 24 602 271 95 70 chrX 1560458 1560511 -175413629 - MLT1D LTR MaLR 0 505 455 2467 138 19 0 chrX 1560511 1560570 -175413570 + L1PB1 LINE L1 5731 5787 -364 270 0 0 0 chrX 1560570 1560600 -175413540 + (CA)n Simple_repeat Simple_repeat 2 31 0 2467 138 19 0 chrX 1560600 1560953 -175413187 + L1PB1 LINE L1 5787 6151 0 602 271 95 70 chrX 1560953 1561330 -175412810 - MLT1D LTR MaLR -50 455 64 1364 181 55 43 chrX 1561336 1561684 -175412456 - MLT1A2 LTR MaLR 0 374 23 2119 125 36 22 chrX 1561689 1562048 -175412092 - THE1B LTR MaLR 0 364 1 1149 234 64 39 chrX 1563767 1564202 -175409938 + MLT1C LTR MaLR 22 467 0 1795 184 56 29 chrX 1565449 1565980 -175408160 + MLT2A2 LTR ERVL 1 554 0 255 103 0 0 chrX 1566443 1566482 -175407658 + (TTCA)n Simple_repeat Simple_repeat 1 39 0 1916 107 70 0 chrX 1567042 1567312 -175406828 - AluSx SINE Alu -21 291 3 688 228 82 30 chrX 1567418 1567531 -175406609 - L1MB7 LINE L1 -249 5935 5829 2369 123 76 27 chrX 1567531 1567939 -175406201 + MSTA LTR MaLR 1 428 0 688 228 82 30 chrX 1567939 1568057 -175406083 - L1MB7 LINE L1 -355 5829 5692 356 194 120 0 chrX 1568051 1568159 -175405981 + L1MB4 LINE L1 6035 6155 -25 * 2250 102 0 0 chrX 1568241 1568534 -175405606 + AluSx SINE Alu 7 299 -13 455 212 7 0 chrX 1568668 1568814 -175405326 + CT-rich Low_complexity Low_complexity 2 148 0 647 196 0 6 chrX 1568909 1569088 -175405052 + CT-rich Low_complexity Low_complexity 2 179 0 21 36 0 0 chrX 1569385 1569413 -175404727 + AT_rich Low_complexity Low_complexity 1 28 0 298 263 0 13 chrX 1570299 1570375 -175403765 + (CATA)n Simple_repeat Simple_repeat 4 78 0 385 247 6 22 chrX 1570375 1570557 -175403583 + (TA)n Simple_repeat Simple_repeat 1 179 0 196 200 10 40 chrX 1570628 1570728 -175403412 + (TA)n Simple_repeat Simple_repeat 1 97 0 323 211 0 84 chrX 1570739 1570834 -175403306 + L1MC4 LINE L1 6615 6701 -1341 454 220 14 24 chrX 1570878 1571179 -175402961 + (CATATA)n Simple_repeat Simple_repeat 1 297 0 291 140 0 0 chrX 1571281 1571331 -175402809 + (TATG)n Simple_repeat Simple_repeat 4 53 0 643 207 93 5 chrX 1572795 1572988 -175401152 - MER20 DNA MER1_type -9 210 1 428 35 17 0 chrX 1572992 1573050 -175401090 + (TAGA)n Simple_repeat Simple_repeat 3 61 0 2099 128 30 41 chrX 1573052 1573420 -175400720 + THE1B LTR MaLR 1 364 0 473 161 39 13 chrX 1573420 1573575 -175400565 + (TAGA)n Simple_repeat Simple_repeat 3 161 0 811 198 51 42 chrX 1573609 1573826 -175400314 - MER20 DNA MER1_type 0 219 1 2024 150 0 6 chrX 1573994 1574308 -175399832 + AluSx SINE Alu 1 312 0 241 148 49 0 chrX 1575265 1575326 -175398814 + (CATA)n Simple_repeat Simple_repeat 4 67 0 1951 131 166 66 chrX 1577043 1577454 -175396686 + LTR47A LTR ERVL 1 452 0 240 314 98 49 chrX 1578782 1579046 -175395094 + L2 LINE L2 2364 2640 -674 408 191 0 0 chrX 1579296 1579385 -175394755 + (CAT)n Simple_repeat Simple_repeat 3 91 0 24 0 0 0 chrX 1579875 1579899 -175394241 + AT_rich Low_complexity Low_complexity 1 24 0 464 269 14 28 chrX 1580499 1580640 -175393500 - MIR SINE MIR -56 206 68 494 215 20 108 chrX 1580925 1581120 -175393020 - MER5B DNA MER1_type 0 178 1 253 228 33 11 chrX 1581529 1581621 -175392519 + (TA)n Simple_repeat Simple_repeat 2 95 0 284 217 14 0 chrX 1582331 1582400 -175391740 + MLT1J LTR MaLR 100 169 -342 663 209 11 6 chrX 1583916 1584093 -175390047 + GA-rich Low_complexity Low_complexity 3 180 0 28 91 0 0 chrX 1584378 1584455 -175389685 + AT_rich Low_complexity Low_complexity 1 77 0 484 262 17 17 chrX 1584735 1584907 -175389233 - L1ME LINE L1 -474 5647 5476 317 184 0 13 chrX 1584951 1585027 -175389113 + CT-rich Low_complexity Low_complexity 2 76 0 305 250 15 0 chrX 1585074 1585142 -175388998 - MER5B DNA MER1_type -109 69 1 337 202 0 21 chrX 1585389 1585483 -175388657 + CT-rich Low_complexity Low_complexity 1 92 0 1429 130 39 4 chrX 1585574 1585828 -175388312 - L1MA5A LINE L1 -6 6291 6029 1740 166 10 20 chrX 1586153 1586441 -175387699 + AluJo SINE Alu 1 287 -25 996 133 0 0 chrX 1586441 1586621 -175387519 + (TA)n Simple_repeat Simple_repeat 1 180 0 1706 105 201 10 chrX 1586719 1587032 -175387108 - THE1C LTR MaLR 0 375 3 340 172 0 0 chrX 1587907 1587965 -175386175 - MER63 DNA MER1_type -315 747 690 1363 91 0 0 chrX 1588661 1588859 -175385281 - L1PA14 LINE L1 -361 5800 5603 2342 83 0 93 chrX 1588859 1589255 -175384885 + L1PA14 LINE L1 5800 6159 -2 1744 184 7 3 chrX 1590061 1590366 -175383774 - AluJo SINE Alu -6 306 1 21 36 0 0 chrX 1592336 1592364 -175381776 + AT_rich Low_complexity Low_complexity 1 28 0 2172 140 0 6 chrX 1592441 1592755 -175381385 + AluSx SINE Alu 1 312 0 4949 129 19 8 chrX 1592755 1593589 -175380551 + L1PA15 LINE L1 5321 6163 -2 23 0 0 0 chrX 1593590 1593613 -175380527 + AT_rich Low_complexity Low_complexity 1 23 0 201 270 95 0 chrX 1593900 1593963 -175380177 - MIR SINE MIR -92 170 102 1026 196 117 56 chrX 1595021 1595363 -175378777 - MLT1A1 LTR MaLR -2 363 1 485 154 23 17 chrX 1595422 1595597 -175378543 + (TA)n Simple_repeat Simple_repeat 1 176 0 336 153 0 0 chrX 1595714 1595773 -175378367 - L1MC1 LINE L1 -484 5849 5791 637 193 8 0 chrX 1595780 1595899 -175378241 + L1MC1 LINE L1 6214 6333 0 3403 146 50 2 chrX 1597272 1597847 -175376293 + LTR26 LTR ERV1 1 603 0 638 164 103 0 chrX 1597997 1598113 -175376027 + MER5A DNA MER1_type 1 128 -61 513 106 12 12 chrX 1598115 1598200 -175375940 + THE1B LTR MaLR 280 364 0 3851 103 0 12 chrX 1599191 1599752 -175374388 - MER41A LTR ERV1 0 554 1 1473 150 33 57 chrX 1599752 1600085 -175374055 + L1MC1 LINE L1 6009 6333 0 266 225 38 0 chrX 1600096 1600176 -175373964 + L1M4 LINE L1 5815 5897 -287 875 124 58 0 chrX 1600177 1600314 -175373826 - LTR12 LTR ERV1 -234 480 336 472 101 130 0 chrX 1600314 1600383 -175373757 + AluJb SINE Alu 209 286 -26 1819 170 3 13 chrX 1600652 1600958 -175373182 - AluJo SINE Alu -9 303 1 33 0 0 0 chrX 1601740 1601773 -175372367 + AT_rich Low_complexity Low_complexity 1 33 0 1280 173 18 162 chrX 1601778 1602228 -175371912 - L1PA15 LINE L1 0 6165 5781 265 127 1 52 chrX 1602250 1602308 -175371832 + L1P2 LINE L1 5774 5828 -327 318 267 0 22 chrX 1602342 1602432 -175371708 - L1MC4 LINE L1 -1339 6703 6616 211 257 14 14 chrX 1602433 1602472 -175371668 + (TA)n Simple_repeat Simple_repeat 1 42 -32 571 113 0 0 chrX 1602472 1602552 -175371588 + MADE1 DNA Mariner 1 80 0 211 257 14 14 chrX 1602552 1602586 -175371554 + (TA)n Simple_repeat Simple_repeat 41 74 0 932 151 0 0 chrX 1602587 1602733 -175371407 - L1PA15 LINE L1 -368 5788 5643 606 262 12 0 chrX 1603196 1603368 -175370772 - MER96B DNA MER1_type? -243 174 1 180 176 0 0 chrX 1603452 1603486 -175370654 + (TATG)n Simple_repeat Simple_repeat 3 36 0 1715 195 7 0 chrX 1603525 1603823 -175370317 - AluJo SINE Alu -12 300 1 831 187 0 0 chrX 1603837 1603971 -175370169 - AluJo SINE Alu -178 134 1 227 176 0 0 chrX 1603991 1604025 -175370115 + Tigger5 DNA MER2_type 2273 2306 -17 233 224 0 35 chrX 1604049 1604107 -175370033 + Tigger5 DNA MER2_type 1 56 -2267 * 321 206 14 14 chrX 1604075 1604148 -175369992 + Tigger5 DNA MER2_type 2251 2323 0 368 162 38 0 chrX 1604148 1604253 -175369887 + (TA)n Simple_repeat Simple_repeat 1 109 0 27 29 0 0 chrX 1604286 1604320 -175369820 + AT_rich Low_complexity Low_complexity 1 34 0 191 35 0 35 chrX 1604368 1604397 -175369743 + (TA)n Simple_repeat Simple_repeat 1 28 0 370 288 58 14 chrX 1604668 1604807 -175369333 + MER77 LTR ERV1 55 199 -406 1104 234 96 47 chrX 1604855 1605261 -175368879 + MER77 LTR ERV1 173 598 -7 375 105 0 0 chrX 1605453 1605510 -175368630 + (GA)n Simple_repeat Simple_repeat 2 58 0 1162 243 80 39 chrX 1607410 1607850 -175366290 - MLT1C LTR MaLR -8 459 2 552 219 73 35 chrX 1607861 1608141 -175365999 - MLT1D LTR MaLR -144 361 14 713 232 81 32 chrX 1608154 1608451 -175365689 - MLT1C LTR MaLR -122 345 24 1162 182 5 5 chrX 1608713 1608922 -175365218 - AluJo SINE Alu -4 308 100 1485 171 25 18 chrX 1608922 1609196 -175364944 + AluJo SINE Alu 24 299 -13 2098 119 36 7 chrX 1609416 1609719 -175364421 - AluSx SINE Alu 0 312 1 2097 145 0 0 chrX 1610522 1610832 -175363308 - AluSx SINE Alu -2 310 1 2417 66 3 7 chrX 1611129 1611432 -175362708 + AluY SINE Alu 1 302 -9 2387 139 58 0 chrX 1612431 1612775 -175361365 + THE1B LTR MaLR 1 364 0 1840 163 0 0 chrX 1613314 1613624 -175360516 - AluJb SINE Alu 0 310 1 1088 124 10 161 chrX 1614029 1614247 -175359893 - Tigger4(Zombi) DNA MER2_type -5 2726 2561 1454 204 25 0 chrX 1614247 1614527 -175359613 - AluJo SINE Alu -25 287 1 1088 124 10 161 chrX 1614527 1614599 -175359541 - Tigger4(Zombi) DNA MER2_type -170 2561 2480 1957 146 0 17 chrX 1614600 1614902 -175359238 + AluJb SINE Alu 1 297 -15 418 244 0 0 chrX 1614979 1615061 -175359079 - Tigger4(Zombi) DNA MER2_type -2649 82 1 4205 141 19 16 chrX 1615126 1615635 -175358505 + MER41B LTR ERV1 1 514 -121 2362 100 7 0 chrX 1615635 1615945 -175358195 - AluSx SINE Alu 0 312 1 4205 141 19 16 chrX 1615945 1616068 -175358072 + MER41B LTR ERV1 514 635 0 3587 111 61 23 chrX 1616626 1617196 -175356944 - MER4B LTR ERV1 -9 601 10 2496 200 28 48 chrX 1618124 1618689 -175355451 - MLT2B3 LTR ERVL 0 554 1 238 207 0 52 chrX 1618689 1618747 -175355393 + MLT1A1 LTR MaLR 308 362 -3 532 165 0 0 chrX 1618888 1618979 -175355161 + L1PB4 LINE L1 6061 6151 -5 889 223 5 11 chrX 1619372 1619560 -175354580 - MLT1A1 LTR MaLR -17 348 162 515 155 10 0 chrX 1619562 1619665 -175354475 + GA-rich Low_complexity Low_complexity 2 105 0 22 0 0 0 chrX 1620052 1620074 -175354066 + AT_rich Low_complexity Low_complexity 1 22 0 259 77 0 0 chrX 1621086 1621117 -175353023 - MADE1 DNA Mariner 0 80 47 2064 139 0 0 chrX 1621117 1621419 -175352721 + AluSx SINE Alu 1 302 -10 931 211 70 26 chrX 1621421 1621706 -175352434 + MSTD LTR MaLR 48 389 -7 1762 173 0 19 chrX 1622050 1622357 -175351783 - AluJo SINE Alu -11 301 1 213 94 0 0 chrX 1622583 1622615 -175351525 + (TAA)n Simple_repeat Simple_repeat 2 33 0 43 71 0 0 chrX 1622620 1622705 -175351435 + AT_rich Low_complexity Low_complexity 1 85 0 810 158 0 0 chrX 1622745 1622865 -175351275 + FLAM_C SINE Alu 6 125 -18 4523 97 8 0 chrX 1623162 1623749 -175350391 - L1PA10 LINE L1 -4 6164 5573 257 211 42 28 chrX 1623756 1623827 -175350313 - MLT1E3 LTR MaLR -8 616 545 1776 135 8 15 chrX 1624353 1624670 -175349470 + Tigger2 DNA MER2_type 1 2609 -109 216 202 10 40 chrX 1624741 1624840 -175349300 + (TATAA)n Simple_repeat Simple_repeat 2 97 0 182 123 27 55 chrX 1624882 1624955 -175349185 + (TATAA)n Simple_repeat Simple_repeat 5 75 0 224 288 34 0 chrX 1624979 1625125 -175349015 + (TA)n Simple_repeat Simple_repeat 1 151 0 544 213 9 19 chrX 1625126 1625234 -175348906 + Tigger2 DNA MER2_type 2601 2707 -11 22 80 0 0 chrX 1625234 1625284 -175348856 + AT_rich Low_complexity Low_complexity 1 50 0 444 305 41 15 chrX 1625419 1625616 -175348524 + MLT1H LTR MaLR 87 288 -261 514 249 154 6 chrX 1625643 1625812 -175348328 + MLT1H LTR MaLR 356 549 0 430 260 26 42 chrX 1625879 1626071 -175348069 + HAL1 LINE L1 1486 1674 -833 24 109 0 0 chrX 1626625 1626726 -175347414 + AT_rich Low_complexity Low_complexity 1 101 0 828 173 0 0 chrX 1627659 1627786 -175346354 + FLAM_C SINE Alu 1 127 -16 1919 166 0 0 chrX 1628305 1628600 -175345540 - AluJb SINE Alu -15 297 3 2565 121 20 3 chrX 1628630 1628986 -175345154 + THE1B LTR MaLR 1 362 -2 1781 174 0 0 chrX 1630507 1630788 -175343352 - AluJb SINE Alu -23 289 9 1795 147 0 53 chrX 1631919 1632239 -175341901 - AluJo SINE Alu -9 303 1 1526 172 36 7 chrX 1632675 1632954 -175341186 + MER2 DNA MER2_type 28 314 -31 1274 186 17 0 chrX 1633017 1633253 -175340887 + AluJb SINE Alu 52 291 -21 234 179 0 0 chrX 1634386 1634442 -175339698 + (TCTA)n Simple_repeat Simple_repeat 3 58 0 775 140 22 27 chrX 1634464 1634799 -175339341 + (TCTA)n Simple_repeat Simple_repeat 1 333 0 235 288 0 0 chrX 1635068 1635127 -175339013 + LTR16A LTR ERVL 385 443 -7 1827 160 3 3 chrX 1635613 1635907 -175338233 - AluJo SINE Alu -18 294 1 233 232 18 0 chrX 1635994 1636050 -175338090 - L1ME3A LINE L1 -114 6056 6000 1675 169 3 40 chrX 1636632 1636772 -175337368 - AluJo SINE Alu -20 292 148 2869 105 47 0 chrX 1636772 1637181 -175336959 + MSTA LTR MaLR 1 428 0 1675 169 3 40 chrX 1637181 1637342 -175336798 - AluJo SINE Alu -164 148 2 2302 121 23 69 chrX 1637715 1638152 -175335988 + L1PB4 LINE L1 5605 6021 -135 348 155 48 0 chrX 1638275 1638359 -175335781 + CT-rich Low_complexity Low_complexity 4 91 0 532 215 35 9 chrX 1638387 1638943 -175335197 + CT-rich Low_complexity Low_complexity 1 570 0 1801 185 91 8 chrX 1639581 1639964 -175334176 - MLT1D LTR MaLR -90 415 1 236 81 54 0 chrX 1639965 1640002 -175334138 - MLT1D LTR MaLR -455 50 12 277 188 42 0 chrX 1640010 1640058 -175334082 - MLT1D LTR MaLR -455 50 1 308 125 42 0 chrX 1640059 1640107 -175334033 - MLT1D LTR MaLR -455 50 1 1276 246 58 87 chrX 1640219 1640517 -175333623 + MER77 LTR ERV1 55 302 -303 2556 148 46 5 chrX 1640517 1640928 -175333212 + MSTA LTR MaLR 1 428 0 1276 246 58 87 chrX 1640928 1641216 -175332924 + MER77 LTR ERV1 302 597 -8 1642 173 10 33 chrX 1641348 1641830 -175332310 + AluJo SINE Alu 6 312 0 985 90 0 34 chrX 1641854 1642032 -175332108 + (GGAA)n Simple_repeat Simple_repeat 2 173 0 1861 175 9 62 chrX 1642389 1642765 -175331375 + L1MB8 LINE L1 5773 6126 -52 1618 195 30 0 chrX 1642765 1643062 -175331078 + AluJo SINE Alu 1 306 -6 1861 175 9 62 chrX 1643062 1643107 -175331033 + L1MB8 LINE L1 6126 6172 -6 722 242 6 0 chrX 1644100 1644257 -175329883 - L1PB4 LINE L1 -5 6151 5994 1589 161 56 7 chrX 1644391 1644677 -175329463 - MLT1A1 LTR MaLR -2 363 64 1964 174 17 62 chrX 1644723 1645126 -175329014 - MLT1B LTR MaLR -3 387 3 194 121 30 0 chrX 1645627 1645660 -175328480 + (CA)n Simple_repeat Simple_repeat 1 34 0 1884 148 13 10 chrX 1645907 1646212 -175327928 - AluJo SINE Alu -6 306 1 2525 120 3 0 chrX 1646234 1646600 -175327540 - L1PB4 LINE L1 0 6156 5790 1120 127 6 0 chrX 1646600 1646758 -175327382 + THE1B LTR MaLR 3 161 -203 8822 57 16 1 chrX 1646758 1648627 -175325513 - L1PA6 LINE L1 -4 6150 4287 1976 43 30 0 chrX 1648628 1648863 -175325277 + L1PA6 LINE L1 4045 4286 -1860 1141 115 72 48 chrX 1648863 1649071 -175325069 + THE1B LTR MaLR 152 364 0 1298 119 12 27 chrX 1649071 1649323 -175324817 - L1PB4 LINE L1 -360 5796 5550 1253 219 32 69 chrX 1649907 1649980 -175324160 + MLT1A1 LTR MaLR 1 75 -290 2028 117 23 94 chrX 1649980 1650373 -175323767 + MLT1A1 LTR MaLR 1 365 0 1253 219 32 69 chrX 1650373 1650678 -175323462 + MLT1A1 LTR MaLR 75 365 0 2121 156 35 20 chrX 1650854 1651043 -175323097 + L1MA7 LINE L1 5889 6074 -217 2363 129 116 13 chrX 1651043 1651431 -175322709 - MSTA LTR MaLR 0 428 1 2121 156 35 20 chrX 1651431 1651638 -175322502 + L1MA7 LINE L1 6074 6291 0 885 147 27 7 chrX 1652110 1652260 -175321880 - L1MA4 LINE L1 -302 5998 5846 586 258 113 36 chrX 1652260 1652589 -175321551 + MER20B DNA MER1_type 292 645 -138 398 171 0 0 chrX 1652731 1652801 -175321339 + L1PB4 LINE L1 6079 6148 -8 950 63 39 16 chrX 1652805 1652954 -175321186 + L1PA10 LINE L1 6039 6168 0 510 279 63 82 chrX 1652973 1653343 -175320797 - L1ME3A LINE L1 -248 5922 5579 2161 110 7 0 chrX 1653343 1653635 -175320505 + AluSx SINE Alu 1 294 -18 510 279 63 82 chrX 1653635 1653861 -175320279 - L1ME3A LINE L1 -591 5579 5350 509 254 117 64 chrX 1653905 1654298 -175319842 - L1ME3A LINE L1 -867 5279 4866 282 379 11 32 chrX 1654337 1654527 -175319613 + LTR16C LTR ERVL 73 258 -233 1210 213 54 57 chrX 1654587 1654972 -175319168 - MLT1B LTR MaLR 0 467 4 524 124 0 157 chrX 1655380 1655426 -175318714 + Tigger5 DNA MER2_type 2222 2239 -84 1869 166 16 3 chrX 1655426 1655734 -175318406 - AluJo SINE Alu 0 312 1 524 124 0 157 chrX 1655734 1655808 -175318332 + Tigger5 DNA MER2_type 2239 2323 0 1406 137 5 0 chrX 1656447 1656666 -175317474 - MLT1B LTR MaLR -12 378 159 1249 172 5 9 chrX 1656667 1656902 -175317238 - MLT1B LTR MaLR 0 396 158 1397 225 30 48 chrX 1656904 1657302 -175316838 - MLT1B LTR MaLR -1 395 1 574 213 22 7 chrX 1657667 1658215 -175315925 + GA-rich Low_complexity Low_complexity 1 556 0 236 374 0 0 chrX 1658216 1658299 -175315841 + A-rich Low_complexity Low_complexity 4 86 0 274 132 0 0 chrX 1658550 1658588 -175315552 - MER20 DNA MER1_type 0 219 182 409 105 0 0 chrX 1658589 1658646 -175315494 - Alu SINE Alu -16 296 240 2402 145 3 3 chrX 1658733 1659092 -175315048 - THE1B LTR MaLR 0 364 6 4149 153 15 44 chrX 1659092 1659496 -175314644 + LTR62 LTR ERVK 3 378 -341 1629 167 3 44 chrX 1659496 1659813 -175314327 - AluJb SINE Alu -8 304 1 4149 153 15 44 chrX 1659813 1660142 -175313998 + LTR62 LTR ERVK 378 715 -4 2825 178 10 2 chrX 1660841 1661335 -175312805 - L1MB3 LINE L1 0 6183 5686 677 183 11 22 chrX 1661690 1661870 -175312270 + CT-rich Low_complexity Low_complexity 3 180 0 447 166 36 22 chrX 1661886 1662025 -175312115 + CT-rich Low_complexity Low_complexity 1 141 0 414 79 0 16 chrX 1662410 1662473 -175311667 - L1P4 LINE L1 -671 5495 5434 329 209 91 0 chrX 1662670 1662780 -175311360 + L1PA15 LINE L1 5196 5315 -831 564 231 103 15 chrX 1662780 1662983 -175311157 - THE1C LTR MaLR 0 375 155 795 148 56 14 chrX 1663104 1663246 -175310894 - THE1C LTR MaLR -227 148 1 4565 119 1 35 chrX 1663247 1663963 -175310177 + L1PA15 LINE L1 5312 6003 -162 3231 86 36 2 chrX 1663955 1664396 -175309744 - L1PA13 LINE L1 -25 6138 5683 * 2157 123 0 0 chrX 1665226 1665511 -175308629 - AluSx SINE Alu -17 295 11 357 109 0 0 chrX 1666760 1666815 -175307325 + (TC)n Simple_repeat Simple_repeat 2 56 0 1083 236 96 47 chrX 1667007 1667413 -175306727 - MER77 LTR ERV1 -7 598 173 370 288 58 14 chrX 1667461 1667600 -175306540 - MER77 LTR ERV1 -406 199 55 191 35 0 35 chrX 1667871 1667900 -175306240 + (TA)n Simple_repeat Simple_repeat 1 28 0 27 29 0 0 chrX 1667948 1667982 -175306158 + AT_rich Low_complexity Low_complexity 1 34 0 440 150 35 0 chrX 1668015 1668128 -175306012 + (TA)n Simple_repeat Simple_repeat 1 117 0 321 206 14 14 chrX 1668128 1668201 -175305939 - Tigger5 DNA MER2_type 0 2323 2251 233 224 0 35 chrX 1668169 1668227 -175305913 - Tigger5 DNA MER2_type -2267 56 1 * 227 176 0 0 chrX 1668251 1668285 -175305855 - Tigger5 DNA MER2_type -17 2306 2273 831 187 0 0 chrX 1668305 1668439 -175305701 + AluJo SINE Alu 1 134 -178 1715 195 7 0 chrX 1668453 1668751 -175305389 + AluJo SINE Alu 1 300 -12 180 176 0 0 chrX 1668790 1668824 -175305316 + (CATA)n Simple_repeat Simple_repeat 3 36 0 606 262 12 0 chrX 1668908 1669080 -175305060 + MER96B DNA MER1_type? 1 174 -243 932 151 0 0 chrX 1669543 1669689 -175304451 + L1PA15 LINE L1 5643 5788 -368 211 257 14 14 chrX 1669690 1669724 -175304416 + (TA)n Simple_repeat Simple_repeat 1 34 -40 571 113 0 0 chrX 1669724 1669804 -175304336 - MADE1 DNA Mariner 0 80 1 211 257 14 14 chrX 1669804 1669843 -175304297 + (TA)n Simple_repeat Simple_repeat 33 74 0 318 267 0 22 chrX 1669844 1669934 -175304206 + L1MC4 LINE L1 6616 6703 -1339 265 127 1 52 chrX 1669968 1670026 -175304114 - L1P2 LINE L1 -327 5828 5774 1280 173 18 162 chrX 1670048 1670498 -175303642 + L1PA15 LINE L1 5781 6165 0 33 0 0 0 chrX 1670503 1670536 -175303604 + AT_rich Low_complexity Low_complexity 1 33 0 1787 154 20 29 chrX 1671318 1671624 -175302516 + AluJo SINE Alu 1 303 -9 472 101 130 0 chrX 1671893 1671962 -175302178 - AluJb SINE Alu -26 286 209 875 124 58 0 chrX 1671962 1672099 -175302041 + LTR12 LTR ERV1 336 480 -234 266 225 38 0 chrX 1672100 1672180 -175301960 - L1M4 LINE L1 -287 5897 5815 1633 150 33 57 chrX 1672191 1672524 -175301616 - L1MC1 LINE L1 0 6333 6009 4147 113 0 11 chrX 1672524 1673084 -175301056 + MER41A LTR ERV1 1 554 0 2337 116 42 33 chrX 1674076 1674437 -175299703 - THE1B LTR MaLR 0 364 1 497 193 28 0 chrX 1674700 1674845 -175299295 + (TA)n Simple_repeat Simple_repeat 1 149 0 719 205 22 32 chrX 1674853 1674871 -175299269 - MLT1B LTR MaLR -109 358 341 2265 118 29 50 chrX 1674871 1675254 -175298886 - THE1C LTR MaLR 0 375 1 719 205 22 32 chrX 1675254 1675420 -175298720 - MLT1B LTR MaLR -126 341 176 813 178 0 22 chrX 1675425 1675560 -175298580 - FLAM_C SINE Alu -10 133 2 751 212 11 38 chrX 1675560 1675744 -175298396 - MLT1B LTR MaLR -210 180 2 1149 116 0 0 chrX 1676107 1676262 -175297878 - AluSg/x SINE Alu -17 295 141 2256 90 0 29 chrX 1676265 1676577 -175297563 - AluSx SINE Alu -9 303 1 1695 182 3 35 chrX 1676684 1677003 -175297137 - AluJo SINE Alu -3 309 1 1916 167 0 0 chrX 1677320 1677613 -175296527 + AluJo SINE Alu 1 293 -19 2081 141 3 0 chrX 1677912 1678211 -175295929 + AluSx SINE Alu 1 300 -12 189 0 0 0 chrX 1678409 1678430 -175295710 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1498 169 63 11 chrX 1678610 1678894 -175295246 - AluJo SINE Alu -11 301 3 801 180 0 22 chrX 1678902 1679041 -175295099 - FLAM_C SINE Alu 0 143 8 224 322 76 34 chrX 1681897 1682015 -175292125 - MIR3 SINE MIR -3 205 83 1822 176 0 28 chrX 1682125 1682444 -175291696 + AluJo SINE Alu 1 310 -2 1993 152 0 0 chrX 1682559 1682869 -175291271 - AluSx SINE Alu -2 310 1 216 184 0 0 chrX 1682952 1683001 -175291139 + (TG)n Simple_repeat Simple_repeat 1 49 0 31 26 0 0 chrX 1683571 1683609 -175290531 + AT_rich Low_complexity Low_complexity 1 38 0 1594 161 4 11 chrX 1683621 1683881 -175290259 - AluJb SINE Alu -54 258 1 21 0 0 0 chrX 1683882 1683903 -175290237 + AT_rich Low_complexity Low_complexity 1 21 0 832 171 0 36 chrX 1684028 1684168 -175289972 + AluJb SINE Alu 1 135 -177 1681 168 10 17 chrX 1684168 1684460 -175289680 + AluJb SINE Alu 1 290 -22 2379 103 3 0 chrX 1684828 1685130 -175289010 + AluSq SINE Alu 1 303 -10 1034 145 54 0 chrX 1685130 1685296 -175288844 + AluSq SINE Alu 134 308 -5 1198 130 12 0 chrX 1685391 1685560 -175288580 + AluSg/x SINE Alu 132 302 -10 938 142 25 12 chrX 1686181 1686343 -175287797 - FRAM SINE Alu -13 163 1 180 0 0 0 chrX 1686726 1686746 -175287394 + (TA)n Simple_repeat Simple_repeat 1 20 0 2408 82 0 0 chrX 1686836 1687127 -175287013 - AluSx SINE Alu -8 304 14 4654 79 92 0 chrX 1687446 1688078 -175286062 - LTR8 LTR ERV1 -1 690 1 2687 116 83 2 chrX 1688596 1688992 -175285148 + MSTA LTR MaLR 1 428 0 2092 128 0 0 chrX 1689097 1689387 -175284753 + AluSx SINE Alu 1 290 -22 2265 92 0 3 chrX 1689852 1690144 -175283996 + AluSc SINE Alu 1 291 -18 21 0 0 0 chrX 1690144 1690165 -175283975 + AT_rich Low_complexity Low_complexity 1 21 0 2124 137 0 3 chrX 1690232 1690538 -175283602 - AluSx SINE Alu -4 308 4 2058 71 0 8 chrX 1691101 1691356 -175282784 + AluSq SINE Alu 1 253 -60 919 182 18 0 chrX 1691356 1691521 -175282619 + AluJb SINE Alu 145 312 0 904 126 0 14 chrX 1692030 1692173 -175281967 - FRAM SINE Alu -3 173 33 29 0 0 0 chrX 1692519 1692548 -175281592 + AT_rich Low_complexity Low_complexity 1 29 0 211 237 40 45 chrX 1692804 1692981 -175281159 + (TATATG)n Simple_repeat Simple_repeat 5 180 0 * 393 203 38 30 chrX 1692906 1693276 -175280864 + (TA)n Simple_repeat Simple_repeat 1 372 0 738 231 40 5 chrX 1693755 1693954 -175280186 + MER20 DNA MER1_type 7 212 -7 224 256 33 44 chrX 1694441 1694621 -175279519 + (TTATA)n Simple_repeat Simple_repeat 1 178 0 222 192 62 27 chrX 1694556 1694702 -175279438 + (TA)n Simple_repeat Simple_repeat 1 151 0 * 230 259 25 49 chrX 1694697 1694859 -175279281 + (TATAA)n Simple_repeat Simple_repeat 5 162 0 210 241 59 6 chrX 1694945 1695115 -175279025 + (TA)n Simple_repeat Simple_repeat 2 180 0 * 328 166 44 61 chrX 1695049 1695230 -175278910 + (TTATA)n Simple_repeat Simple_repeat 3 180 0 1081 146 45 10 chrX 1695523 1695722 -175278418 - L1MB5 LINE L1 -11 6163 5958 617 246 6 18 chrX 1695728 1695899 -175278241 - L1MB5 LINE L1 -393 5781 5613 1913 164 3 0 chrX 1695925 1696218 -175277922 + AluJb SINE Alu 1 294 -18 185 217 87 76 chrX 1696381 1696473 -175277667 + L2 LINE L2 942 1034 -2280 726 223 113 87 chrX 1696880 1697373 -175276767 - MER34C LTR ERV1 -75 490 5 242 156 44 22 chrX 1697626 1697671 -175276469 + MLT1C LTR MaLR 130 175 -215 885 142 0 47 chrX 1697675 1697823 -175276317 + AluJb SINE Alu 1 141 -171 1207 225 30 27 chrX 1697850 1698148 -175275992 + MLT1C LTR MaLR 169 467 0 21 0 0 0 chrX 1698349 1698370 -175275770 + AT_rich Low_complexity Low_complexity 1 21 0 3736 120 24 0 chrX 1698453 1698987 -175275153 - L1PB4 LINE L1 0 6156 5610 2423 87 0 13 chrX 1699159 1699469 -175274671 - AluSq SINE Alu -5 308 3 23 0 0 0 chrX 1700094 1700117 -175274023 + AT_rich Low_complexity Low_complexity 1 23 0 206 174 0 22 chrX 1700304 1700350 -175273790 + A-rich Low_complexity Low_complexity 3 47 0 357 145 0 0 chrX 1700388 1700464 -175273676 + (TG)n Simple_repeat Simple_repeat 2 77 0 1869 148 39 7 chrX 1701224 1701507 -175272633 + AluJo SINE Alu 2 293 -19 911 137 6 22 chrX 1701514 1701697 -175272443 + (GAA)n Simple_repeat Simple_repeat 1 180 0 225 0 0 0 chrX 1701743 1701768 -175272372 + (TTTC)n Simple_repeat Simple_repeat 2 26 0 731 313 47 49 chrX 1702188 1702702 -175271438 - MER34 LTR ERV1 -29 513 1 395 185 31 17 chrX 1702827 1703201 -175270939 + GA-rich Low_complexity Low_complexity 1 379 0 225 254 48 0 chrX 1703212 1703275 -175270865 + GA-rich Low_complexity Low_complexity 3 68 0 231 114 0 0 chrX 1703282 1703317 -175270823 + (GA)n Simple_repeat Simple_repeat 1 35 0 374 100 17 0 chrX 1703463 1703523 -175270617 - MER4E LTR ERV1 0 779 719 2600 91 0 6 chrX 1703523 1703875 -175270265 - MER41A LTR ERV1 0 554 205 1006 143 20 31 chrX 1703858 1704054 -175270086 + MER39B LTR ERV1 76 269 -384 * 556 177 10 0 chrX 1704056 1704152 -175269988 + AluJ/FLAM SINE Alu 2 98 -214 369 190 10 47 chrX 1705419 1705691 -175268449 + CT-rich Low_complexity Low_complexity 1 261 0 899 143 0 0 chrX 1705698 1705831 -175268309 - FLAM_C SINE Alu 0 133 1 1070 153 49 0 chrX 1705831 1706034 -175268106 + MER65A LTR ERV1 233 445 0 1883 160 13 7 chrX 1707267 1707574 -175266566 - AluJb SINE Alu -3 309 1 324 127 0 0 chrX 1707628 1707683 -175266457 + (TG)n Simple_repeat Simple_repeat 2 56 0 616 176 43 152 chrX 1707704 1707914 -175266226 + MER39B LTR ERV1 65 251 -402 2195 113 0 0 chrX 1708730 1709058 -175265082 - AluSx SINE Alu 0 328 1 389 174 12 23 chrX 1710079 1710165 -175263975 + L1MC2 LINE L1 6084 6168 -176 650 116 0 11 chrX 1710165 1710260 -175263880 + MER4A LTR ERV1 1 94 -570 1616 98 61 292 chrX 1710260 1710985 -175263155 + LTR12 LTR ERV1 2 558 -156 2250 141 18 39 chrX 1710997 1711513 -175262627 + MER4A LTR ERV1 90 662 -2 265 216 0 0 chrX 1711515 1711566 -175262574 + L1MC2 LINE L1 6165 6215 -129 3448 110 15 68 chrX 1711591 1711622 -175262518 + MER4B LTR ERV1 1 32 -747 2197 113 3 3 chrX 1711622 1711922 -175262218 + AluSx SINE Alu 1 300 -12 3448 110 15 68 chrX 1711922 1712452 -175261688 + MER4B LTR ERV1 32 694 -85 4078 141 5 11 chrX 1712452 1713091 -175261049 + MER41B LTR ERV1 1 635 0 3448 110 15 68 chrX 1713091 1713173 -175260967 + MER4B LTR ERV1 694 779 0 403 122 73 0 chrX 1713177 1713259 -175260881 + L1MC2 LINE L1 6255 6342 -2 255 109 46 45 chrX 1714394 1714452 -175259688 - MLT2B2 LTR ERVL 0 515 475 1819 192 73 84 chrX 1714455 1715001 -175259139 + LTR64 LTR ERVK 1 540 -18 735 177 0 48 chrX 1715003 1715150 -175258990 - FLAM_C SINE Alu -2 141 2 311 81 40 14 chrX 1715168 1715242 -175258898 + (TAGA)n Simple_repeat Simple_repeat 1 76 0 1131 179 25 0 chrX 1715491 1715692 -175258448 + MLT2C1 LTR ERVL 1 206 -191 1419 144 0 0 chrX 1715692 1715907 -175258233 + AluSg/x SINE Alu 85 299 -13 1377 160 43 19 chrX 1715907 1716163 -175257977 + MLT2C2 LTR ERVL 198 459 -5 3598 58 9 0 chrX 1716656 1717088 -175257052 - MLT2A1 LTR ERVL -8 436 1 2205 91 3 0 chrX 1717198 1717483 -175256657 + AluY SINE Alu 1 286 -25 32 0 0 0 chrX 1717483 1717515 -175256625 + AT_rich Low_complexity Low_complexity 1 32 0 1811 80 4 4 chrX 1717699 1717925 -175256215 - AluSc SINE Alu -83 226 1 1459 185 45 24 chrX 1718426 1718713 -175255427 - AluJb SINE Alu -19 293 1 200 122 0 49 chrX 1720067 1720108 -175254032 + (TTC)n Simple_repeat Simple_repeat 1 39 0 1044 220 46 85 chrX 1720726 1720908 -175253232 - MER39 LTR ERV1 0 707 520 1716 157 3 21 chrX 1720908 1721195 -175252945 - AluSx SINE Alu -30 282 1 1044 220 46 85 chrX 1721195 1721460 -175252680 - MER39 LTR ERV1 -187 520 150 226 36 0 0 chrX 1721577 1721605 -175252535 + Alu SINE Alu 74 101 -201 248 222 4 0 chrX 1721682 1721741 -175252399 - MER39 LTR ERV1 -584 60 1 207 0 0 0 chrX 1722106 1722129 -175252011 + (TTTC)n Simple_repeat Simple_repeat 1 23 0 721 199 0 0 chrX 1722129 1722260 -175251880 - FRAM SINE Alu -1 175 45 280 257 14 0 chrX 1722262 1722332 -175251808 - MER34C LTR ERV1 -491 94 24 1063 247 0 0 chrX 1722452 1722675 -175251465 + MER58A DNA MER1_type 2 224 0 1914 179 65 3 chrX 1722998 1723367 -175250773 + MER89 LTR ERV1 168 559 0 1902 166 28 8 chrX 1724150 1724506 -175249634 - MLT1A1 LTR MaLR -2 363 1 644 205 0 0 chrX 1724833 1724945 -175249195 + FLAM_A SINE Alu 6 117 -25 1168 0 38 13 chrX 1724946 1725105 -175249035 + (TAGA)n Simple_repeat Simple_repeat 4 166 0 392 353 95 17 chrX 1725235 1725530 -175248610 - L1MC4a LINE L1 -1879 5929 5612 2757 134 5 2 chrX 1726464 1726867 -175247273 + MSTA-int LTR MaLR 1248 1651 0 2488 133 70 0 chrX 1726869 1727267 -175246873 + MSTA LTR MaLR 3 428 0 3836 99 4 4 chrX 1727780 1728315 -175245825 - L1PA11 LINE L1 -1 6173 5639 1644 163 41 24 chrX 1729285 1729404 -175244736 + AluJb SINE Alu 1 116 -196 303 49 0 0 chrX 1729404 1729445 -175244695 + (CA)n Simple_repeat Simple_repeat 2 42 0 1644 163 41 24 chrX 1729445 1729619 -175244521 + AluJb SINE Alu 116 299 -13 267 257 36 36 chrX 1730266 1730406 -175243734 + (TA)n Simple_repeat Simple_repeat 1 140 0 2651 46 0 0 chrX 1730712 1731019 -175243121 - AluY SINE Alu -4 307 1 1752 149 57 20 chrX 1731022 1731323 -175242817 - AluJb SINE Alu 0 312 1 2163 127 0 7 chrX 1732039 1732346 -175241794 - AluSx SINE Alu -7 305 1 1751 174 7 3 chrX 1733028 1733326 -175240814 + AluJo SINE Alu 1 299 -13 425 237 59 25 chrX 1733552 1733670 -175240470 + MLT1J LTR MaLR 226 347 -164 1774 166 39 3 chrX 1733759 1734043 -175240097 - AluJo SINE Alu -18 294 1 1934 147 0 20 chrX 1734443 1734735 -175239405 + AluJo SINE Alu 1 286 -26 1769 165 3 7 chrX 1735038 1735323 -175238817 + AluJb SINE Alu 24 307 -5 239 53 0 26 chrX 1735357 1735395 -175238745 + (TTTTTG)n Simple_repeat Simple_repeat 2 38 0 805 167 177 37 chrX 1735486 1735701 -175238439 - L1PA16 LINE L1 0 6166 5922 * 937 135 0 0 chrX 1735697 1735830 -175238310 + L1PA16 LINE L1 5786 5918 -248 1850 128 28 24 chrX 1737051 1737339 -175236801 - AluJo SINE Alu -23 289 1 313 156 0 78 chrX 1738471 1738548 -175235592 - MER53 DNA DNA 0 189 119 401 129 14 0 chrX 1738689 1738759 -175235381 + (TA)n Simple_repeat Simple_repeat 1 71 0 2203 111 9 19 chrX 1738760 1739075 -175235065 - AluSx SINE Alu 0 312 1 2144 122 21 0 chrX 1739194 1739482 -175234658 + AluSq SINE Alu 1 294 -19 30 27 0 0 chrX 1739709 1739746 -175234394 + AT_rich Low_complexity Low_complexity 1 37 0 426 133 0 53 chrX 1739781 1739856 -175234284 + AluS SINE Alu 2 72 -246 1841 171 3 0 chrX 1740231 1740557 -175233583 - AluJo SINE Alu 0 312 1 836 150 111 28 chrX 1740669 1740849 -175233291 - MER4E-int LTR ERV1 -1653 5105 4911 1658 174 0 7 chrX 1740849 1741131 -175233009 - MER4E LTR ERV1 0 779 500 3508 138 29 16 chrX 1741145 1741705 -175232435 + MER50 LTR ERV1 1 571 -163 2430 76 0 7 chrX 1741705 1742007 -175232133 - AluSq SINE Alu -13 300 1 3508 138 29 16 chrX 1742007 1742026 -175232114 + MER50 LTR ERV1 571 588 -146 1001 137 18 12 chrX 1742026 1742194 -175231946 - MER4E-int LTR ERV1 -2421 4337 4169 1600 99 5 9 chrX 1742194 1742407 -175231733 + AluSq SINE Alu 85 296 -17 471 138 0 0 chrX 1742423 1742503 -175231637 - MER4E-int LTR ERV1 -2572 4186 4107 2881 118 60 128 chrX 1742525 1742632 -175231508 + MER4A LTR ERV1 2 115 -664 207 0 0 0 chrX 1742632 1742655 -175231485 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2881 118 60 128 chrX 1742655 1743253 -175230887 + MER4A LTR ERV1 115 779 0 769 145 7 62 chrX 1743253 1743398 -175230742 - MER4E-int LTR ERV1 -2653 4105 3969 281 186 17 0 chrX 1743398 1743457 -175230683 + MER72 LTR ERV1 663 722 0 4459 105 2 3 chrX 1743480 1744081 -175230059 - MER4A LTR ERV1 0 600 1 4899 136 8 45 chrX 1744081 1744093 -175230047 - MER4E-int LTR ERV1 -2794 3964 3953 2061 159 14 30 chrX 1744093 1744463 -175229677 + THE1B LTR MaLR 1 364 0 4899 136 8 45 chrX 1744463 1744796 -175229344 - MER4E-int LTR ERV1 -2805 3953 3609 2101 134 0 3 chrX 1744796 1745088 -175229052 + AluSx SINE Alu 5 295 -17 4899 136 8 45 chrX 1745088 1745190 -175228950 - MER4E-int LTR ERV1 -3149 3609 3505 1477 115 55 0 chrX 1745190 1745408 -175228732 - MER30 DNA MER1_type 0 230 1 4899 136 8 45 chrX 1745408 1745802 -175228338 - MER4E-int LTR ERV1 -3253 3505 3152 1379 201 21 97 chrX 1745802 1746086 -175228054 + LTR9 LTR ERV1 1 305 -307 2293 83 0 10 chrX 1746086 1746408 -175227732 + AluSq SINE Alu 1 319 0 1379 201 21 97 chrX 1746408 1746462 -175227678 + LTR9 LTR ERV1 305 305 -307 1998 91 4 0 chrX 1746462 1746716 -175227424 + AluSp SINE Alu 47 301 -12 1379 201 21 97 chrX 1746716 1746798 -175227342 + LTR9 LTR ERV1 304 391 -221 936 184 116 54 chrX 1746776 1747053 -175227087 + LTR19C LTR ERV1 486 779 0 * 1558 151 36 4 chrX 1747054 1747332 -175226808 - MER4E-int LTR ERV1 -3604 3154 2868 963 271 43 88 chrX 1747343 1747853 -175226287 + LTR1B LTR ERV1 39 603 -302 12805 150 64 73 chrX 1747959 1748184 -175225956 - MER4E-int LTR ERV1 -3885 2873 2647 1619 163 10 27 chrX 1748184 1748484 -175225656 + AluJo SINE Alu 1 295 -17 12805 150 64 73 chrX 1748484 1749094 -175225046 - MER4E-int LTR ERV1 -4111 2647 2033 2193 119 0 10 chrX 1749094 1749396 -175224744 - AluSg SINE Alu -11 299 1 12805 150 64 73 chrX 1749396 1749473 -175224667 - MER4E-int LTR ERV1 -4725 2033 1957 2158 119 0 3 chrX 1749473 1749776 -175224364 + AluSx SINE Alu 1 302 -10 12805 150 64 73 chrX 1749776 1750680 -175223460 - MER4E-int LTR ERV1 -4801 1957 1046 2257 105 20 0 chrX 1750680 1750986 -175223154 + AluSx SINE Alu 1 312 0 12805 150 64 73 chrX 1750986 1752060 -175222080 - MER4E-int LTR ERV1 -5712 1046 6 2367 159 84 16 chrX 1752064 1752504 -175221636 - MER4E LTR ERV1 0 779 310 987 219 21 29 chrX 1752504 1752710 -175221430 + L1MC4 LINE L1 7316 7521 -521 2209 110 0 0 chrX 1752710 1753009 -175221131 + AluSx SINE Alu 1 299 -13 987 219 21 29 chrX 1753009 1753044 -175221096 + L1MC4 LINE L1 7521 7555 -487 244 254 59 35 chrX 1753078 1753247 -175220893 - L1M4 LINE L1 -3861 2285 2113 1653 155 3 91 chrX 1753669 1753688 -175220452 - AluJo SINE Alu -6 306 287 180 0 0 0 chrX 1753688 1753708 -175220432 + (TAG)n Simple_repeat Simple_repeat 1 20 0 1653 155 3 91 chrX 1753708 1754017 -175220123 - AluJo SINE Alu -25 287 7 2259 122 70 14 chrX 1754188 1754532 -175219608 + THE1B LTR MaLR 1 363 -1 23 33 0 0 chrX 1754979 1755009 -175219131 + AT_rich Low_complexity Low_complexity 1 30 0 323 34 134 0 chrX 1755009 1755128 -175219012 + (TA)n Simple_repeat Simple_repeat 2 136 0 403 222 0 30 chrX 1755131 1755230 -175218910 - L1MA7 LINE L1 -25 6266 6171 * 432 149 14 0 chrX 1755228 1755302 -175218838 + L1MA7 LINE L1 6043 6117 -174 307 308 47 0 chrX 1755409 1755516 -175218624 - MIR SINE MIR -52 210 99 1980 60 0 8 chrX 1755963 1756213 -175217927 + AluSq SINE Alu 1 248 -65 488 118 13 0 chrX 1756431 1756507 -175217633 + Alu SINE Alu 225 301 -10 456 132 44 22 chrX 1756507 1756598 -175217542 - L1MB3 LINE L1 -5 6178 6086 2070 121 0 3 chrX 1756600 1756882 -175217258 + AluSx SINE Alu 6 286 -26 544 145 13 0 chrX 1756918 1756994 -175217146 + AluJ/FLAM SINE Alu 2 78 -234 1848 166 130 13 chrX 1757024 1757416 -175216724 + MER66B LTR ERV1 48 485 -1 531 284 132 11 chrX 1757667 1757857 -175216283 - MIR SINE MIR -2 260 48 217 115 19 39 chrX 1759152 1759204 -175214936 + CT-rich Low_complexity Low_complexity 3 53 0 661 169 11 33 chrX 1759220 1759403 -175214737 + CT-rich Low_complexity Low_complexity 2 180 0 1136 153 0 0 chrX 1759461 1759638 -175214502 - AluSg/x SINE Alu 0 310 134 380 239 69 96 chrX 1759784 1760002 -175214138 + MLT1L LTR MaLR 225 461 -75 1377 237 72 70 chrX 1760581 1760628 -175213512 + MER74B LTR ERVL 57 102 -520 1559 166 72 11 chrX 1760628 1760906 -175213234 - AluJo SINE Alu -17 295 1 1377 237 72 70 chrX 1760906 1760986 -175213154 + MER74B LTR ERVL 102 180 -442 2049 127 81 35 chrX 1760986 1761333 -175212807 + THE1B LTR MaLR 2 364 0 1377 237 72 70 chrX 1761333 1761744 -175212396 + MER74B LTR ERVL 180 597 -25 576 192 135 0 chrX 1761754 1761858 -175212282 + FLAM_C SINE Alu 1 118 -15 32 0 0 0 chrX 1761858 1761890 -175212250 + AT_rich Low_complexity Low_complexity 1 32 0 2159 117 0 0 chrX 1761943 1762250 -175211890 + AluSx SINE Alu 1 307 0 324 158 0 0 chrX 1762593 1762650 -175211490 + GA-rich Low_complexity Low_complexity 3 59 0 1254 82 10 46 chrX 1762670 1762865 -175211275 - AluSg/x SINE Alu -4 308 121 469 210 4 4 chrX 1763041 1763279 -175210861 + GA-rich Low_complexity Low_complexity 1 238 0 2167 151 34 77 chrX 1763635 1764131 -175210009 + L1MA8 LINE L1 5816 6290 -1 314 197 17 11 chrX 1764884 1765062 -175209078 + (TA)n Simple_repeat Simple_repeat 1 179 0 21 0 0 0 chrX 1765062 1765083 -175209057 + AT_rich Low_complexity Low_complexity 1 21 0 290 250 35 43 chrX 1765083 1765199 -175208941 - L1MA5A LINE L1 -11 6286 6172 534 259 179 0 chrX 1765220 1765382 -175208758 + MIR SINE MIR 42 232 -30 264 184 41 0 chrX 1765415 1765562 -175208578 + (TA)n Simple_repeat Simple_repeat 2 154 0 236 210 30 10 chrX 1765581 1765894 -175208246 + (TA)n Simple_repeat Simple_repeat 1 319 0 498 278 179 0 chrX 1765978 1766140 -175208000 - MIR SINE MIR -30 232 42 667 171 0 16 chrX 1766161 1766284 -175207856 + L1MA5A LINE L1 6172 6292 -5 24 85 0 0 chrX 1766297 1766356 -175207784 + AT_rich Low_complexity Low_complexity 1 59 0 2046 96 25 53 chrX 1766854 1767064 -175207076 + L1PB1 LINE L1 5475 5689 -462 2133 108 0 0 chrX 1767064 1767343 -175206797 + AluSx SINE Alu 1 279 -33 264 30 0 0 chrX 1767343 1767376 -175206764 + (CAA)n Simple_repeat Simple_repeat 1 33 0 2046 96 25 53 chrX 1767376 1767486 -175206654 + L1PB1 LINE L1 5687 5787 -364 294 29 0 0 chrX 1767688 1767723 -175206417 + (CA)n Simple_repeat Simple_repeat 1 35 0 2865 69 6 0 chrX 1767723 1768073 -175206067 + L1PB1 LINE L1 5793 6144 -7 3278 170 17 7 chrX 1768306 1768883 -175205257 + L1MA8 LINE L1 5696 6278 -13 229 155 0 71 chrX 1768906 1768990 -175205150 + A-rich Low_complexity Low_complexity 1 78 0 1714 137 63 4 chrX 1769058 1769329 -175204811 + AluJo SINE Alu 9 295 -17 28 0 0 0 chrX 1769371 1769399 -175204741 + AT_rich Low_complexity Low_complexity 1 28 0 1804 138 0 56 chrX 1769934 1770253 -175203887 + AluJo SINE Alu 1 301 -11 1834 98 8 0 chrX 1770791 1771036 -175203104 - AluSx SINE Alu -16 296 50 310 97 0 32 chrX 1771468 1771530 -175202610 + (CA)n Simple_repeat Simple_repeat 2 61 0 240 301 27 0 chrX 1771540 1771613 -175202527 + GA-rich Low_complexity Low_complexity 5 79 0 1712 147 41 10 chrX 1772551 1772844 -175201296 - AluJo SINE Alu -10 302 1 1049 189 0 0 chrX 1773009 1773178 -175200962 - AluSx SINE Alu -15 295 127 279 0 0 0 chrX 1773194 1773225 -175200915 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 40424 73 10 7 chrX 1773225 1779334 -175194806 - L1PA6 LINE L1 -11 6143 11 1143 82 0 0 chrX 1779345 1779480 -175194660 - AluSx SINE Alu -178 135 1 1637 201 0 26 chrX 1779781 1780090 -175194050 - AluJo SINE Alu -11 301 1 1742 185 7 0 chrX 1780158 1780461 -175193679 + 7SLRNA srpRNA srpRNA 16 320 0 1997 138 7 0 chrX 1782088 1782385 -175191755 + AluSx SINE Alu 3 301 -11 1627 174 7 37 chrX 1782400 1782699 -175191441 + AluJo SINE Alu 1 290 -22 22 0 0 0 chrX 1782699 1782721 -175191419 + AT_rich Low_complexity Low_complexity 1 22 0 679 270 42 5 chrX 1782757 1782972 -175191168 - LTR16C LTR ERVL -45 446 224 306 62 0 0 chrX 1783298 1783346 -175190794 - AluSp/q SINE Alu 0 303 256 239 321 0 42 chrX 1783484 1783652 -175190488 + T-rich Low_complexity Low_complexity 2 162 0 206 398 12 12 chrX 1783610 1783771 -175190369 + CT-rich Low_complexity Low_complexity 3 163 0 * 2320 167 29 12 chrX 1783960 1784379 -175189761 + L1MC1 LINE L1 5907 6332 -1 2070 119 0 4 chrX 1784386 1784683 -175189457 + AluSx SINE Alu 9 304 0 1237 236 0 0 chrX 1784683 1784925 -175189215 + AluJb SINE Alu 51 292 -20 1765 162 0 32 chrX 1785008 1785317 -175188823 + AluJb SINE Alu 1 299 -13 187 254 18 36 chrX 1785753 1785808 -175188332 - MIR SINE MIR -139 69 16 425 208 15 15 chrX 1786329 1786421 -175187719 + (TCTA)n Simple_repeat Simple_repeat 1 91 -554 2493 124 5 27 chrX 1786421 1786793 -175187347 - THE1B LTR MaLR 0 364 1 425 208 15 15 chrX 1786793 1786974 -175187166 + (TCTA)n Simple_repeat Simple_repeat 91 645 0 * 604 48 29 19 chrX 1786973 1787076 -175187064 + (TTTC)n Simple_repeat Simple_repeat 4 107 0 509 105 30 63 chrX 1787096 1787340 -175186800 + (TCTA)n Simple_repeat Simple_repeat 1 235 0 222 105 0 0 chrX 1787340 1787378 -175186762 + (TC)n Simple_repeat Simple_repeat 2 39 0 744 224 33 22 chrX 1788848 1789031 -175185109 + MLT1D LTR MaLR 1 185 -320 797 178 0 0 chrX 1789162 1789280 -175184860 + FLAM_C SINE Alu 1 118 -15 379 195 58 12 chrX 1789393 1789534 -175184606 + MLT1D LTR MaLR 191 360 -123 792 233 81 106 chrX 1789545 1790038 -175184102 + MLT1D LTR MaLR 1 481 -24 872 163 0 15 chrX 1790870 1791005 -175183135 + FLAM_C SINE Alu 1 133 0 2236 118 0 6 chrX 1791328 1791642 -175182498 - AluSx SINE Alu 0 312 1 1738 180 7 16 chrX 1792483 1792788 -175181352 + AluSx SINE Alu 3 304 -8 333 351 61 63 chrX 1792925 1793351 -175180789 + L2 LINE L2 2511 2936 -336 1350 249 32 99 chrX 1793351 1793418 -175180722 - LTR45 LTR ERV1 0 525 455 1595 185 10 3 chrX 1793418 1793710 -175180430 - AluJb SINE Alu -13 299 6 1350 249 32 99 chrX 1793710 1793859 -175180281 - LTR45 LTR ERV1 -70 455 298 1824 166 10 13 chrX 1793859 1794172 -175179968 + AluJo SINE Alu 1 312 0 1350 249 32 99 chrX 1794172 1794517 -175179623 - LTR45 LTR ERV1 -227 298 1 333 351 61 63 chrX 1794517 1794693 -175179447 + L2 LINE L2 2936 3108 -164 1114 214 18 7 chrX 1794973 1795249 -175178891 - L1MA4 LINE L1 0 6300 6022 813 150 21 50 chrX 1795389 1795529 -175178611 - AluJo SINE Alu -176 136 1 2249 110 0 3 chrX 1795572 1795873 -175178267 - AluSg SINE Alu -10 300 1 1036 203 5 0 chrX 1795898 1796095 -175178045 - AluJ SINE Alu -8 304 107 455 171 0 24 chrX 1796102 1796184 -175177956 + AluY SINE Alu 4 83 -228 * 820 148 0 0 chrX 1796176 1796291 -175177849 - AluJ SINE Alu -193 119 5 1051 139 0 0 chrX 1796356 1796514 -175177626 - FRAM SINE Alu -7 169 12 639 169 0 119 chrX 1796885 1797045 -175177095 + AluJb SINE Alu 149 289 -23 2172 197 10 18 chrX 1797045 1797446 -175176694 - MER57A LTR ERV1 -4 399 2 3428 168 21 33 chrX 1797669 1797876 -175176264 + LTR51 LTR ERV1 1 209 -462 1806 173 0 20 chrX 1797876 1798171 -175175969 - AluJb SINE Alu -23 289 1 3428 168 21 33 chrX 1798171 1798350 -175175790 + LTR51 LTR ERV1 209 389 -282 1796 154 48 7 chrX 1798350 1798642 -175175498 - AluJb SINE Alu -5 307 4 3428 168 21 33 chrX 1798642 1798919 -175175221 + LTR51 LTR ERV1 389 657 -14 7948 35 2 0 chrX 1798919 1800556 -175173584 + L1PA3 LINE L1 4514 6153 -2 347 194 83 28 chrX 1800632 1800740 -175173400 + MER34C LTR ERV1 37 150 -435 423 91 0 0 chrX 1800744 1800799 -175173341 - L1PA13 LINE L1 -69 6094 6040 489 186 21 10 chrX 1800799 1800896 -175173244 + MER4A LTR ERV1 1 98 -566 1694 129 25 73 chrX 1800896 1801259 -175172881 + MER4A LTR ERV1 261 664 0 1721 87 0 0 chrX 1801259 1801490 -175172650 - L1PA12 LINE L1 -125 6043 5813 767 243 44 56 chrX 1801532 1801941 -175172199 + MER34B LTR ERV1 76 557 -8 265 200 0 0 chrX 1801958 1802008 -175172132 + MER45A DNA AcHobo 79 128 -50 2948 113 5 27 chrX 1802008 1802168 -175171972 - MER57B LTR ERV1 0 434 272 2352 52 7 29 chrX 1802168 1802475 -175171665 + AluY SINE Alu 1 300 -11 2948 113 5 27 chrX 1802475 1802758 -175171382 - MER57B LTR ERV1 -162 272 1 265 226 20 0 chrX 1802780 1802851 -175171289 + MER45 DNA AcHobo 1506 1580 -1 1942 149 3 0 chrX 1803074 1803376 -175170764 + AluJb SINE Alu 1 303 -9 345 337 46 17 chrX 1805013 1805188 -175168952 - MIR SINE MIR -10 252 73 211 403 21 27 chrX 1805364 1805550 -175168590 + MIR3 SINE MIR 19 203 -5 1184 130 52 23 chrX 1805855 1806099 -175168041 - L1PB1 LINE L1 -215 5941 5693 2372 181 37 45 chrX 1806142 1806360 -175167780 - MER66B LTR ERV1 -3 483 265 1912 127 0 7 chrX 1806360 1806636 -175167504 - AluSx SINE Alu -3 309 36 2372 181 37 45 chrX 1806636 1806904 -175167236 - MER66B LTR ERV1 -221 265 1 181 336 26 43 chrX 1806908 1807024 -175167116 + MIR SINE MIR 10 123 -139 1020 211 26 103 chrX 1807053 1807469 -175166671 + MLT1B LTR MaLR 7 390 0 481 111 100 11 chrX 1807694 1807784 -175166356 + MER4A LTR ERV1 1 98 -566 1775 141 163 68 chrX 1807784 1808153 -175165987 + MER4A LTR ERV1 261 664 0 1069 203 64 0 chrX 1808403 1808639 -175165501 + AluJo SINE Alu 1 251 -61 2196 124 0 0 chrX 1808814 1809112 -175165028 - AluSx SINE Alu -14 298 1 1470 156 7 68 chrX 1810122 1810197 -175163943 + L1MA5A LINE L1 6006 6084 -213 3771 132 4 9 chrX 1810197 1810727 -175163413 + MER1A DNA MER1_type 1 527 0 1470 156 7 68 chrX 1810727 1810946 -175163194 + L1MA5A LINE L1 6084 6282 -15 180 111 0 0 chrX 1811141 1811168 -175162972 + (GAAA)n Simple_repeat Simple_repeat 3 29 0 2157 128 0 3 chrX 1811374 1811679 -175162461 - AluSx SINE Alu -8 304 1 475 246 41 8 chrX 1811748 1811870 -175162270 - L1MA9 LINE L1 -9 6303 6178 1558 151 44 4 chrX 1812575 1812846 -175161294 + L1PA16 LINE L1 5875 6156 -10 21 36 0 0 chrX 1812846 1812874 -175161266 + AT_rich Low_complexity Low_complexity 1 28 0 2191 125 3 0 chrX 1812953 1813256 -175160884 - AluSp SINE Alu -9 304 1 2222 109 3 0 chrX 1813260 1813554 -175160586 - AluSq SINE Alu -13 300 6 2518 258 76 8 chrX 1813574 1814522 -175159618 + L1M4 LINE L1 4187 5198 -948 29 47 0 0 chrX 1814554 1814597 -175159543 + AT_rich Low_complexity Low_complexity 1 43 0 424 195 80 0 chrX 1814637 1814750 -175159390 - L1M4 LINE L1 -1382 4764 4643 323 277 0 0 chrX 1814753 1814818 -175159322 + MER2 DNA MER2_type 280 344 -1 211 216 0 54 chrX 1814844 1814918 -175159222 + T-rich Low_complexity Low_complexity 1 70 0 651 238 10 10 chrX 1814941 1815147 -175158993 - L1M4 LINE L1 -948 5198 4993 1629 156 7 19 chrX 1815149 1815418 -175158722 - MER2 DNA MER2_type -79 266 1 2138 123 3 3 chrX 1816529 1816839 -175157301 + AluSq SINE Alu 1 310 -3 2219 166 20 43 chrX 1817655 1818100 -175156040 + L1MA4 LINE L1 5586 6020 -280 412 172 35 0 chrX 1818103 1818190 -175155950 + L1MB3 LINE L1 6094 6183 0 235 347 31 0 chrX 1818767 1818865 -175155275 + L2 LINE L2 2936 3036 -277 24 0 0 0 chrX 1818865 1818889 -175155251 + AT_rich Low_complexity Low_complexity 1 24 0 506 260 82 41 chrX 1818927 1819146 -175154994 + L2 LINE L2 3034 3261 -52 2291 75 4 0 chrX 1819371 1819650 -175154490 - AluSc SINE Alu -17 292 13 3173 123 11 0 chrX 1819694 1820149 -175153991 + L1PB2 LINE L1 5683 6142 -9 2296 107 3 0 chrX 1821400 1821708 -175152432 + AluSg1 SINE Alu 1 309 0 25 31 0 0 chrX 1822436 1822468 -175151672 + AT_rich Low_complexity Low_complexity 1 32 0 1460 237 72 86 chrX 1822478 1823224 -175150916 + L1MC4 LINE L1 7172 7907 -135 186 133 0 0 chrX 1823233 1823263 -175150877 + (GA)n Simple_repeat Simple_repeat 2 31 0 391 206 0 11 chrX 1823301 1823393 -175150747 + L1MC4 LINE L1 7935 8025 -17 2400 130 30 25 chrX 1823554 1823916 -175150224 - THE1B LTR MaLR 0 364 1 736 174 0 43 chrX 1824042 1824180 -175149960 + FLAM_C SINE Alu 3 134 -9 551 15 15 0 chrX 1824216 1824284 -175149856 + (TG)n Simple_repeat Simple_repeat 2 70 0 2007 99 70 0 chrX 1824295 1824568 -175149572 - AluSp SINE Alu -21 292 1 949 264 55 42 chrX 1825140 1825519 -175148621 - MLT1B LTR MaLR -6 384 1 227 186 43 0 chrX 1826133 1826203 -175147937 + (TA)n Simple_repeat Simple_repeat 2 74 0 294 211 51 23 chrX 1826266 1826441 -175147699 + (TA)n Simple_repeat Simple_repeat 1 180 0 382 170 33 55 chrX 1826795 1826977 -175147163 + (TATAA)n Simple_repeat Simple_repeat 1 178 0 22 80 0 0 chrX 1827081 1827131 -175147009 + AT_rich Low_complexity Low_complexity 1 50 0 823 178 0 0 chrX 1827163 1827292 -175146848 - FRAM SINE Alu -25 151 23 22 35 0 0 chrX 1827329 1827358 -175146782 + AT_rich Low_complexity Low_complexity 1 29 0 226 235 41 24 chrX 1827367 1827537 -175146603 + (TA)n Simple_repeat Simple_repeat 1 173 0 195 259 121 35 chrX 1828135 1828251 -175145889 + MIR SINE MIR 136 261 -1 356 121 4 0 chrX 1828271 1828391 -175145749 + MADE1 DNA Mariner 1 80 0 4275 141 38 0 chrX 1828398 1829056 -175145084 + L1PA16 LINE L1 5476 6158 -8 2245 69 24 0 chrX 1829137 1829425 -175144715 - AluY SINE Alu -16 295 1 315 96 0 0 chrX 1830084 1830136 -175144004 + (TATG)n Simple_repeat Simple_repeat 1 52 0 643 118 57 10 chrX 1830136 1830545 -175143595 + (TCTA)n Simple_repeat Simple_repeat 1 428 0 200 259 0 17 chrX 1830576 1830634 -175143506 + (CA)n Simple_repeat Simple_repeat 2 58 0 24 53 0 0 chrX 1830661 1830699 -175143441 + AT_rich Low_complexity Low_complexity 1 38 0 1879 107 4 32 chrX 1831078 1831101 -175143039 + L1PA16 LINE L1 5665 5687 -479 1805 193 0 0 chrX 1831101 1831396 -175142744 + AluJb SINE Alu 1 295 -17 1879 107 4 32 chrX 1831396 1831652 -175142488 + L1PA16 LINE L1 5687 5936 -230 1765 143 7 33 chrX 1831652 1831925 -175142215 - AluJo SINE Alu -46 266 1 290 214 11 34 chrX 1832051 1832140 -175142000 + L1MA9 LINE L1 6196 6282 -30 1375 184 4 0 chrX 1832156 1832390 -175141750 + L1PA16 LINE L1 5923 6157 -9 2862 176 94 25 chrX 1833026 1833451 -175140689 + LTR26 LTR ERV1 1 476 -127 2034 136 7 0 chrX 1833451 1833746 -175140394 + AluSq SINE Alu 1 297 -16 2862 176 94 25 chrX 1833746 1833884 -175140256 + LTR26 LTR ERV1 476 603 0 22 56 0 0 chrX 1834301 1834337 -175139803 + AT_rich Low_complexity Low_complexity 1 36 0 802 197 185 31 chrX 1834346 1834642 -175139498 + MLT1C LTR MaLR 1 361 -144 962 211 88 53 chrX 1834652 1834993 -175139147 + MLT1C LTR MaLR 1 353 -114 22 0 0 0 chrX 1834996 1835018 -175139122 + AT_rich Low_complexity Low_complexity 1 22 0 1089 206 11 35 chrX 1835064 1835477 -175138663 + MLT1D LTR MaLR 2 466 -39 1688 202 3 3 chrX 1835477 1835774 -175138366 - AluJb SINE Alu -15 297 1 1089 206 11 35 chrX 1835774 1835814 -175138326 + MLT1D LTR MaLR 466 505 0 1351 101 291 0 chrX 1836277 1836504 -175137636 - AluSx SINE Alu -9 293 1 198 71 0 0 chrX 1836934 1836962 -175137178 + (TA)n Simple_repeat Simple_repeat 2 29 0 221 89 36 36 chrX 1836990 1837046 -175137094 + (TA)n Simple_repeat Simple_repeat 2 57 0 655 218 12 98 chrX 1837336 1837580 -175136560 - L1MA4 LINE L1 -2 6298 6077 339 170 9 27 chrX 1838534 1838646 -175135494 + (TAGA)n Simple_repeat Simple_repeat 4 113 0 644 126 30 18 chrX 1838658 1838825 -175135315 + (TAGA)n Simple_repeat Simple_repeat 4 172 0 334 297 21 11 chrX 1838858 1839165 -175134975 + (TGGA)n Simple_repeat Simple_repeat 1 310 0 671 132 17 35 chrX 1839167 1839341 -175134799 + (TAGA)n Simple_repeat Simple_repeat 1 171 0 310 298 16 8 chrX 1839363 1839484 -175134656 + (TGGA)n Simple_repeat Simple_repeat 3 124 0 209 194 0 0 chrX 1839516 1839579 -175134561 + (TATG)n Simple_repeat Simple_repeat 1 63 0 545 219 24 0 chrX 1839642 1839938 -175134202 + (TAGA)n Simple_repeat Simple_repeat 1 303 0 205 217 57 38 chrX 1839938 1840044 -175134096 + (TGGA)n Simple_repeat Simple_repeat 3 110 0 2081 143 0 10 chrX 1840664 1840972 -175133168 + AluSx SINE Alu 1 305 -7 1217 161 21 0 chrX 1840981 1841174 -175132966 - AluJo SINE Alu -110 202 6 2107 146 14 6 chrX 1841459 1841808 -175132332 + MLT1A1 LTR MaLR 12 363 -2 1494 114 0 0 chrX 1841815 1842008 -175132132 - AluSc SINE Alu -16 293 101 495 113 0 0 chrX 1842008 1842070 -175132070 - AluSc SINE Alu -246 63 2 1950 148 3 10 chrX 1842276 1842586 -175131554 - AluSx SINE Alu 0 312 5 2167 236 33 9 chrX 1842606 1842624 -175131516 + L1MB5 LINE L1 5599 5615 -559 2278 104 7 0 chrX 1842624 1842923 -175131217 + AluSp SINE Alu 1 301 -12 2167 236 33 9 chrX 1842923 1843465 -175130675 + L1MB5 LINE L1 5615 6142 -32 2009 158 0 0 chrX 1843465 1843776 -175130364 + AluJb SINE Alu 1 311 -1 1466 219 29 0 chrX 1843783 1844061 -175130079 + AluJo SINE Alu 1 286 -26 1809 128 4 0 chrX 1844161 1844419 -175129721 + AluSx SINE Alu 1 259 -53 2164 106 7 3 chrX 1844561 1844854 -175129286 - AluSx SINE Alu -18 294 1 1667 181 23 13 chrX 1845139 1845448 -175128692 - AluJo SINE Alu 0 312 1 266 300 33 0 chrX 1845665 1845755 -175128385 + GA-rich Low_complexity Low_complexity 2 94 0 409 239 6 6 chrX 1845775 1845951 -175128189 + GA-rich Low_complexity Low_complexity 1 176 0 598 186 6 6 chrX 1845968 1846129 -175128011 + GA-rich Low_complexity Low_complexity 2 162 0 366 244 0 0 chrX 1846142 1846277 -175127863 + GA-rich Low_complexity Low_complexity 2 136 0 1432 183 4 18 chrX 2046286 2046559 -174927581 + LTR2B LTR ERV1 222 490 0 909 117 114 80 chrX 2046559 2046823 -174927317 + LTR1B LTR ERV1 496 784 -1 681 227 8 0 chrX 2046864 2046996 -174927144 + MER21B LTR ERV1 279 411 -452 2999 136 54 24 chrX 2047002 2047586 -174926554 - MER4B LTR ERV1 -6 773 5 2582 143 14 24 chrX 2047592 2048013 -174926127 + MER21A LTR ERV1 506 922 -9 929 193 53 0 chrX 2048023 2048210 -174925930 + L1MB1 LINE L1 5917 6113 -76 1085 35 35 17 chrX 2049183 2049355 -174924785 + (TTTC)n Simple_repeat Simple_repeat 2 176 0 1713 160 0 7 chrX 2049356 2049631 -174924509 - AluJo SINE Alu -38 274 2 2274 106 0 0 chrX 2049805 2050107 -174924033 - AluY SINE Alu -9 302 1 2500 134 7 36 chrX 2050127 2050545 -174923595 - Tigger2a DNA MER2_type -4 430 25 210 143 0 0 chrX 2050940 2050975 -174923165 + (T)n Simple_repeat Simple_repeat 1 35 0 1871 181 0 6 chrX 2050992 2051306 -174922834 + AluJb SINE Alu 1 312 0 1038 113 0 0 chrX 2051879 2052012 -174922128 - AluSq/x SINE Alu -179 133 1 12097 110 24 4 chrX 2052080 2052469 -174921671 + L1P3 LINE L1 10 390 -6061 198 71 0 0 chrX 2052469 2052497 -174921643 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 12097 110 24 4 chrX 2052497 2053868 -174920272 + L1P3 LINE L1 390 1785 -4666 291 185 33 0 chrX 2053870 2053962 -174920178 + GA-rich Low_complexity Low_complexity 2 96 0 2226 102 0 3 chrX 2054924 2055209 -174918931 + AluSx SINE Alu 1 284 -28 512 179 18 30 chrX 2055343 2055467 -174918673 + MLT1C LTR MaLR 1 108 -359 1308 158 48 9 chrX 2055467 2055695 -174918445 - AluJo SINE Alu -75 237 1 29 47 0 0 chrX 2055869 2055912 -174918228 + AT_rich Low_complexity Low_complexity 1 43 0 734 152 9 0 chrX 2056045 2056157 -174917983 - FLAM_C SINE Alu -19 124 12 189 0 0 0 chrX 2056713 2056734 -174917406 + (GGAA)n Simple_repeat Simple_repeat 4 24 0 1662 175 3 27 chrX 2056860 2057157 -174916983 + AluJo SINE Alu 1 290 -22 1193 230 36 48 chrX 2057436 2057792 -174916348 - L1MD2 LINE L1 0 6359 6008 1944 163 3 0 chrX 2057994 2058289 -174915851 - AluJo SINE Alu -16 296 1 1608 191 75 9 chrX 2058545 2058864 -174915276 + MER2 DNA MER2_type 4 343 -1 5140 60 0 6 chrX 2059101 2059740 -174914400 - L1PA8 LINE L1 -12 6160 5526 1857 107 10 10 chrX 2060611 2060900 -174913240 + L1PA13 LINE L1 5873 6161 -2 326 205 51 13 chrX 2060947 2061025 -174913115 - MLT1E1 LTR MaLR -492 162 82 597 105 42 0 chrX 2062868 2062963 -174911177 - L1MA10 LINE L1 0 6334 6236 1501 70 0 10 chrX 2062978 2063177 -174910963 - LTR43 LTR ERV1 -8 594 398 1440 122 9 5 chrX 2063203 2063417 -174910723 - THE1A LTR MaLR -55 300 86 1654 179 24 157 chrX 2063919 2064310 -174909830 + L1MB3 LINE L1 3882 4323 -1823 1856 120 0 39 chrX 2064310 2064594 -174909546 + AluSx SINE Alu 1 273 -39 1654 179 24 157 chrX 2064594 2064695 -174909445 + L1MB3 LINE L1 4323 4285 -1861 1940 137 46 0 chrX 2064695 2064980 -174909160 + AluSx SINE Alu 1 298 -14 1654 179 24 157 chrX 2064980 2065079 -174909061 + L1MB3 LINE L1 4284 4395 -1751 * 2726 158 30 81 chrX 2065050 2065659 -174908481 + L1MB3 LINE L1 5602 6179 -4 1569 142 103 36 chrX 2066105 2066186 -174907954 + MSTA LTR MaLR 98 172 -256 2558 53 3 0 chrX 2066186 2066488 -174907652 + AluY SINE Alu 2 304 -7 1569 142 103 36 chrX 2066488 2066708 -174907432 + MSTA LTR MaLR 172 419 -9 388 211 12 170 chrX 2067767 2067803 -174906337 + MER112 DNA MER1_type 8 48 -212 2325 94 0 0 chrX 2067803 2068100 -174906040 + AluSx SINE Alu 1 297 -15 2126 104 30 7 chrX 2068101 2068398 -174905742 + AluSx SINE Alu 1 304 -8 388 211 12 170 chrX 2068398 2068542 -174905598 + MER112 DNA MER1_type 48 144 -116 2258 99 7 7 chrX 2068542 2068845 -174905295 - AluSx SINE Alu -3 309 7 388 211 12 170 chrX 2068845 2068908 -174905232 + MER112 DNA MER1_type 144 215 -45 2304 106 3 0 chrX 2069581 2069883 -174904257 - AluSx SINE Alu -9 303 1 1532 145 9 112 chrX 2070549 2070880 -174903260 - AluJb SINE Alu -14 298 2 275 0 29 0 chrX 2071227 2071261 -174902879 - MADE1 DNA Mariner -45 35 1 1426 244 97 30 chrX 2072257 2072752 -174901388 + MLT1H LTR MaLR 1 528 -21 29 0 0 0 chrX 2073236 2073265 -174900875 + AT_rich Low_complexity Low_complexity 1 29 0 2110 138 0 0 chrX 2073307 2073605 -174900535 - AluSx SINE Alu -3 309 12 1901 155 0 29 chrX 2074352 2074662 -174899478 + AluJo SINE Alu 1 301 -11 2432 43 4 0 chrX 2074711 2075010 -174899130 - AluY SINE Alu 0 300 1 1666 162 49 0 chrX 2075389 2075508 -174898632 + AluJo SINE Alu 1 113 -199 321 26 0 0 chrX 2075508 2075546 -174898594 + (TAAAA)n Simple_repeat Simple_repeat 2 39 0 1666 162 49 0 chrX 2075546 2075710 -174898430 + AluJo SINE Alu 113 298 -14 1729 162 7 34 chrX 2076614 2076911 -174897229 - AluJo SINE Alu -23 289 1 1802 182 0 10 chrX 2077301 2077614 -174896526 - AluJo SINE Alu 0 312 3 2075 143 10 0 chrX 2078234 2078541 -174895599 + AluSx SINE Alu 1 310 -2 1985 177 32 0 chrX 2078574 2078946 -174895194 + L1PB4 LINE L1 5766 6149 -7 22 0 0 0 chrX 2079154 2079176 -174894964 + GC_rich Low_complexity Low_complexity 1 22 0 79 55 0 0 chrX 2079195 2079323 -174894817 + GC_rich Low_complexity Low_complexity 1 128 0 140 71 0 0 chrX 2079368 2079648 -174894492 + GC_rich Low_complexity Low_complexity 1 280 0 206 163 20 0 chrX 2079665 2079714 -174894426 + C-rich Low_complexity Low_complexity 4 53 0 519 194 0 36 chrX 2079834 2079999 -174894141 + GA-rich Low_complexity Low_complexity 1 159 0 249 273 13 26 chrX 2079999 2080076 -174894064 + A-rich Low_complexity Low_complexity 1 76 0 529 292 0 0 chrX 2080159 2080289 -174893851 - MER77 LTR ERV1 0 605 476 984 176 64 5 chrX 2080292 2080496 -174893644 - L1M2 LINE L1 -725 5587 5372 276 138 62 75 chrX 2080498 2080535 -174893605 + L1MA9 LINE L1 6234 6270 -42 1675 159 0 15 chrX 2080535 2080799 -174893341 + AluJb SINE Alu 35 294 -18 276 138 62 75 chrX 2080799 2080841 -174893299 + L1MA9 LINE L1 6270 6312 0 1443 261 55 60 chrX 2080920 2081407 -174892733 - MER77 LTR ERV1 -119 486 2 185 35 69 0 chrX 2082525 2082554 -174891586 + (TAAA)n Simple_repeat Simple_repeat 1 31 0 2426 118 8 30 chrX 2082600 2082972 -174891168 - THE1B LTR MaLR 0 364 1 1892 169 0 10 chrX 2083068 2083382 -174890758 + AluJb SINE Alu 1 311 -1 808 225 89 65 chrX 2083551 2083957 -174890183 - MLT1C LTR MaLR -6 587 45 278 266 32 13 chrX 2084858 2085016 -174889124 + (TATAA)n Simple_repeat Simple_repeat 2 162 0 215 224 19 28 chrX 2084972 2085079 -174889061 + (TTA)n Simple_repeat Simple_repeat 3 108 0 * 205 121 61 38 chrX 2085079 2085211 -174888929 + (TATAA)n Simple_repeat Simple_repeat 5 139 0 255 178 23 85 chrX 2085258 2085387 -174888753 + (TATAA)n Simple_repeat Simple_repeat 2 122 0 22 35 0 0 chrX 2085604 2085633 -174888507 + AT_rich Low_complexity Low_complexity 1 29 0 2185 109 46 57 chrX 2087489 2087856 -174886284 + THE1B LTR MaLR 1 363 -1 201 154 0 0 chrX 2087863 2087902 -174886238 + (CAA)n Simple_repeat Simple_repeat 1 39 0 10879 21 1 0 chrX 2088115 2090068 -174884072 - L1PA2 LINE L1 -60 6095 4142 19545 190 4 13 chrX 2090068 2095961 -174878179 + HERVE LTR ERV1 814 6668 -1145 272 301 194 25 chrX 2096849 2097045 -174877095 - MIR SINE MIR -22 240 12 236 212 15 0 chrX 2098168 2098234 -174875906 + (CATATA)n Simple_repeat Simple_repeat 4 70 0 2250 169 43 0 chrX 2098443 2098857 -174875283 - MSTB1 LTR MaLR 0 432 1 1049 137 6 17 chrX 2098921 2099096 -174875044 + MSTB1 LTR MaLR 259 431 -1 595 248 63 76 chrX 2099301 2099668 -174874472 + L1ME3 LINE L1 5793 6154 -8 312 309 77 17 chrX 2099831 2100012 -174874128 + L1M4 LINE L1 3239 3430 -2716 314 144 56 11 chrX 2101313 2101403 -174872737 + GA-rich Low_complexity Low_complexity 1 94 0 2163 177 60 20 chrX 2102230 2102681 -174871459 + MLT2B2 LTR ERVL 1 469 -46 378 175 32 7 chrX 2102684 2102838 -174871302 + (TCTA)n Simple_repeat Simple_repeat 3 160 0 491 232 64 8 chrX 2103614 2103739 -174870401 + MER20 DNA MER1_type 1 132 -87 1553 71 0 0 chrX 2103821 2104017 -174870123 + MER107 DNA MER1_type 1 196 -1 2136 135 0 0 chrX 2104368 2104680 -174869460 - AluSx SINE Alu 0 312 1 618 313 85 25 chrX 2105394 2105793 -174868347 - HERV16 LTR ERVL -896 4868 4446 1599 236 115 61 chrX 2106360 2106952 -174867188 + MLT1E3 LTR MaLR 1 624 0 1838 174 127 16 chrX 2107994 2108379 -174865761 - MSTA LTR MaLR 0 428 1 742 293 91 80 chrX 2109091 2110037 -174864103 + L1M4 LINE L1 2177 3140 -3006 1660 132 33 7 chrX 2110037 2110310 -174863830 + L1PA16 LINE L1 5882 6161 -5 742 293 91 80 chrX 2110310 2110492 -174863648 + L1M4 LINE L1 3140 3318 -2828 1635 161 14 27 chrX 2111173 2111465 -174862675 - AluJb SINE Alu -24 288 1 316 316 28 12 chrX 2111469 2111612 -174862528 - MIR SINE MIR -105 103 12 766 59 0 2 chrX 2111624 2111880 -174862260 - AluY SINE Alu -10 301 1 660 102 0 0 chrX 2111946 2112044 -174862096 + (TG)n Simple_repeat Simple_repeat 2 99 0 1841 144 0 4 chrX 2112581 2112852 -174861288 + AluJo SINE Alu 11 280 -32 369 0 0 0 chrX 2112853 2112894 -174861246 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 2674 103 15 2 chrX 2113161 2113569 -174860571 - L1PA13 LINE L1 -19 6144 5732 1931 152 0 33 chrX 2114125 2114428 -174859712 - AluJb SINE Alu -19 293 1 608 219 29 136 chrX 2114568 2114888 -174859252 - MLT1E1 LTR MaLR -242 407 102 487 181 8 24 chrX 2114888 2115015 -174859125 + L1PA13 LINE L1 5750 5874 -289 763 207 101 48 chrX 2116139 2116347 -174857793 - MER20 DNA MER1_type 0 219 1 384 40 0 0 chrX 2116703 2116753 -174857387 + (TG)n Simple_repeat Simple_repeat 2 51 0 569 322 93 34 chrX 2116936 2117473 -174856667 - HERV16 LTR ERVL -2377 3277 2709 528 323 85 26 chrX 2117772 2118162 -174855978 - HERV16 LTR ERVL -4223 773 361 622 310 24 0 chrX 2118466 2118679 -174855461 - HERV16 LTR ERVL -3814 1182 965 4373 141 35 16 chrX 2118835 2119644 -174854496 + L1PB4 LINE L1 5330 6153 -3 1959 157 20 3 chrX 2119883 2120234 -174853906 + L1MB3 LINE L1 5817 6173 -10 194 0 0 37 chrX 2121988 2122015 -174852125 + (TTTTTG)n Simple_repeat Simple_repeat 2 27 0 26 30 0 0 chrX 2122713 2122746 -174851394 + AT_rich Low_complexity Low_complexity 1 33 0 1070 114 35 0 chrX 2122882 2123084 -174851056 + MER39B LTR ERV1 1 209 -444 350 280 68 41 chrX 2123278 2123571 -174850569 + L1ME3A LINE L1 5331 5631 -533 663 263 51 2 chrX 2123599 2123852 -174850288 + L1ME3A LINE L1 5694 5957 -207 21 0 0 0 chrX 2123963 2123984 -174850156 + AT_rich Low_complexity Low_complexity 1 21 0 234 207 0 0 chrX 2124056 2124114 -174850026 + GA-rich Low_complexity Low_complexity 1 58 0 237 262 98 0 chrX 2124397 2124458 -174849682 + L2 LINE L2 3230 3296 -17 998 68 28 11 chrX 2126911 2127087 -174847053 + (TAGA)n Simple_repeat Simple_repeat 1 179 0 248 167 46 42 chrX 2127131 2127356 -174846784 + (TAGA)n Simple_repeat Simple_repeat 1 226 0 392 124 46 52 chrX 2127374 2127527 -174846613 + (TAGA)n Simple_repeat Simple_repeat 3 154 0 512 55 22 22 chrX 2127593 2127684 -174846456 + (TAGA)n Simple_repeat Simple_repeat 2 92 0 342 161 129 21 chrX 2128366 2128459 -174845681 + L1M3 LINE L1 5653 5755 -428 1968 149 0 3 chrX 2129215 2129517 -174844623 - AluJb SINE Alu -7 305 5 314 195 49 12 chrX 2129697 2129779 -174844361 + MLT1I LTR MaLR 318 402 -7 2418 46 3 13 chrX 2129873 2130177 -174843963 + AluY SINE Alu 1 301 -10 279 0 0 0 chrX 2130283 2130314 -174843826 + (CA)n Simple_repeat Simple_repeat 2 32 0 677 143 134 0 chrX 2130580 2130699 -174843441 - AluJb SINE Alu -177 135 1 3731 106 12 9 chrX 2131292 2131856 -174842284 + L1PA16 LINE L1 5592 6157 -9 1425 234 73 15 chrX 2131892 2132423 -174841717 - MER39B LTR ERV1 0 653 92 2590 121 8 7 chrX 2132645 2133193 -174840947 + MER4E LTR ERV1 227 766 0 338 113 0 48 chrX 2133196 2133258 -174840882 - L1MB1 LINE L1 -26 6163 6105 690 165 181 6 chrX 2133281 2133463 -174840677 + MER21A LTR ERV1 6 219 -712 2646 147 45 8 chrX 2133464 2133945 -174840195 + LTR1B LTR ERV1 1 499 -327 1456 183 25 28 chrX 2133945 2134387 -174839753 + LTR2B LTR ERV1 1 490 0 2624 78 0 0 chrX 2134387 2134744 -174839396 + Harlequin LTR ERV1 1 357 -6539 625 24 0 0 chrX 2134744 2134826 -174839314 - L1PA2 LINE L1 0 6155 6074 748 89 48 8 chrX 2134826 2134950 -174839190 - AluY SINE Alu -92 219 91 1518 171 66 21 chrX 2135321 2135608 -174838532 - AluJo SINE Alu -9 303 4 684 93 0 0 chrX 2136446 2136543 -174837597 + (GAAA)n Simple_repeat Simple_repeat 1 97 0 2157 251 93 35 chrX 2136543 2136714 -174837426 + L1ME LINE L1 4151 4311 -1853 2420 74 0 3 chrX 2136714 2137013 -174837127 + AluY SINE Alu 1 298 -13 2157 251 93 35 chrX 2137013 2137720 -174836420 + L1ME LINE L1 4311 4976 -1188 1453 120 0 74 chrX 2137720 2137962 -174836178 + AluSx SINE Alu 1 224 -88 294 29 0 0 chrX 2137962 2137997 -174836143 + (GAAAA)n Simple_repeat Simple_repeat 2 36 0 2157 251 93 35 chrX 2137997 2138505 -174835635 + L1ME LINE L1 4975 5609 -555 21 0 0 0 chrX 2138605 2138626 -174835514 + AT_rich Low_complexity Low_complexity 1 21 0 2293 103 6 0 chrX 2139149 2139460 -174834680 + AluSq SINE Alu 1 313 0 26 0 0 0 chrX 2139496 2139522 -174834618 + AT_rich Low_complexity Low_complexity 1 26 0 511 198 21 80 chrX 2139526 2139705 -174834435 + L1MB5 LINE L1 6014 6183 -1 268 326 6 22 chrX 2140372 2140553 -174833587 + (CA)n Simple_repeat Simple_repeat 1 178 0 378 301 3 34 chrX 2140571 2140907 -174833233 + (CA)n Simple_repeat Simple_repeat 1 325 0 426 302 0 12 chrX 2141037 2141206 -174832934 + (CA)n Simple_repeat Simple_repeat 1 167 0 1272 235 62 75 chrX 2141700 2142138 -174832002 - MER67D LTR ERV1 -8 506 75 1352 152 14 48 chrX 2142140 2142340 -174831800 + L1MA4 LINE L1 5847 6035 -265 1689 158 4 11 chrX 2142340 2142606 -174831534 - AluJo SINE Alu -1 311 48 1352 152 14 48 chrX 2142606 2142694 -174831446 + L1MA4 LINE L1 6035 6125 -175 1787 145 8 0 chrX 2142702 2142964 -174831176 - AluJb SINE Alu -1 311 48 4209 33 17 0 chrX 2142964 2143444 -174830696 - LTR2B LTR ERV1 -2 488 1 406 58 0 0 chrX 2143445 2143497 -174830643 - AluJb SINE Alu -261 52 1 2072 118 13 54 chrX 2144251 2144566 -174829574 - AluSx SINE Alu -10 302 1 2073 141 3 3 chrX 2144800 2145104 -174829036 + AluSx SINE Alu 1 304 -8 560 101 60 18 chrX 2145420 2145588 -174828552 + (TCTA)n Simple_repeat Simple_repeat 3 177 0 275 218 10 0 chrX 2145627 2145728 -174828412 + (TCTA)n Simple_repeat Simple_repeat 4 105 0 197 274 27 27 chrX 2145942 2146015 -174828125 + L3 LINE CR1 1504 1576 -1 3365 177 44 6 chrX 2146695 2147333 -174826807 + L1PB4 LINE L1 5482 6143 -13 1686 167 11 28 chrX 2147879 2148166 -174825974 + AluJo SINE Alu 7 288 -24 242 114 0 23 chrX 2148169 2148213 -174825927 + (GGA)n Simple_repeat Simple_repeat 1 43 0 1135 253 63 38 chrX 2148486 2148913 -174825227 - MLT1C LTR MaLR -9 458 21 1879 161 0 40 chrX 2149010 2149334 -174824806 + AluJo SINE Alu 1 311 -1 234 240 82 96 chrX 2150122 2150180 -174823960 - MLT1J2 LTR MaLR -2 448 391 2695 55 0 3 chrX 2150180 2150492 -174823648 - AluY SINE Alu 0 311 1 234 240 82 96 chrX 2150492 2150641 -174823499 - MLT1J2 LTR MaLR -59 391 244 1368 140 18 0 chrX 2150691 2150912 -174823228 - MLT1B LTR MaLR -8 382 158 466 176 0 22 chrX 2150912 2151003 -174823137 - MLT1A2 LTR MaLR 0 374 286 562 133 67 14 chrX 2151023 2151308 -174822832 + (TCTA)n Simple_repeat Simple_repeat 1 300 0 4055 176 21 4 chrX 2151309 2152030 -174822110 - L1MB3 LINE L1 -8 6175 5443 2005 140 33 7 chrX 2152244 2152544 -174821596 - AluSx SINE Alu -4 308 1 1317 81 0 51 chrX 2152553 2152697 -174821443 + L1MA1 LINE L1 6116 6249 -53 2021 161 0 0 chrX 2152697 2152996 -174821144 + AluSx SINE Alu 1 299 -13 1317 81 0 51 chrX 2152996 2153048 -174821092 + L1MA1 LINE L1 6249 6302 0 24 0 0 0 chrX 2153048 2153072 -174821068 + AT_rich Low_complexity Low_complexity 1 24 0 397 268 14 49 chrX 2153768 2153910 -174820230 - MLT1C LTR MaLR -1 466 330 1551 137 0 0 chrX 2153910 2154161 -174819979 + AluSg/x SINE Alu 86 336 0 396 209 14 119 chrX 2154342 2154467 -174819673 - MER53 DNA DNA -1 188 92 1957 152 10 3 chrX 2154467 2154776 -174819364 + AluJb SINE Alu 1 311 -1 396 209 14 119 chrX 2154776 2154860 -174819280 - MER53 DNA DNA -97 92 1 197 339 51 0 chrX 2155272 2155331 -174818809 + L3 LINE CR1 132 193 -1384 233 270 10 0 chrX 2155433 2155533 -174818607 - HAL1 LINE L1 -124 2383 2283 2208 117 10 7 chrX 2155595 2155903 -174818237 + AluSq SINE Alu 1 309 -4 368 266 78 8 chrX 2155906 2156034 -174818106 + MER87 LTR ERV1 13 149 -392 1756 146 0 8 chrX 2156050 2156340 -174817800 + AluJb SINE Alu 30 317 0 183 42 0 0 chrX 2156366 2156390 -174817750 + (GA)n Simple_repeat Simple_repeat 2 25 0 831 248 89 65 chrX 2156514 2157003 -174817137 + LTR8A LTR ERV1 116 727 0 471 276 100 69 chrX 2157015 2157205 -174816935 - HAL1 LINE L1 -273 2234 2051 921 149 37 50 chrX 2157205 2157366 -174816774 - FRAM SINE Alu -7 159 1 471 276 100 69 chrX 2157366 2157714 -174816426 - HAL1 LINE L1 -456 2051 1679 2495 102 9 80 chrX 2157714 2158164 -174815976 - MER4E LTR ERV1 0 766 349 21 0 0 0 chrX 2158517 2158538 -174815602 + GC_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chrX 2158657 2158678 -174815462 + GC_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chrX 2158827 2158849 -174815291 + GC_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chrX 2159039 2159060 -174815080 + GC_rich Low_complexity Low_complexity 1 21 0 303 122 0 0 chrX 2160128 2160177 -174813963 + (TC)n Simple_repeat Simple_repeat 2 50 0 2486 91 8 36 chrX 2160198 2160263 -174813877 - THE1A LTR MaLR 0 355 290 2263 104 0 3 chrX 2160263 2160560 -174813580 - AluSx SINE Alu -16 296 1 2486 91 8 36 chrX 2160560 2160857 -174813283 - THE1A LTR MaLR -65 290 3 10957 101 43 2 chrX 2160859 2162377 -174811763 - THE1A-int LTR MaLR 0 1580 1 2412 120 11 0 chrX 2162377 2162728 -174811412 - THE1A LTR MaLR 0 355 1 229 186 0 0 chrX 2162916 2162959 -174811181 - Alu SINE Alu -255 44 2 417 151 0 0 chrX 2163483 2163556 -174810584 + tRNA-Ile-ATT tRNA tRNA 1 73 -4 538 107 0 0 chrX 2163897 2163972 -174810168 + tRNA-Ile-ATT tRNA tRNA 1 75 -2 230 300 80 10 chrX 2164413 2164513 -174809627 - L2 LINE L2 -4 3309 3203 1921 143 0 53 chrX 2165280 2165601 -174808539 + AluJb SINE Alu 1 304 -8 183 194 0 0 chrX 2165847 2165878 -174808262 + L2 LINE L2 3231 3261 -11 286 283 43 58 chrX 2166266 2166404 -174807736 + MER5A DNA MER1_type 49 184 -5 250 146 21 0 chrX 2166496 2166544 -174807596 - L2 LINE L2 -205 3067 3019 207 167 0 0 chrX 2167534 2167570 -174806570 + (TCTCTG)n Simple_repeat Simple_repeat 1 36 0 205 155 87 41 chrX 2167884 2167933 -174806207 + MIR SINE MIR 68 119 -89 199 288 0 15 chrX 2167972 2168038 -174806102 - L2 LINE L2 -13 3259 3195 245 339 37 18 chrX 2168492 2168601 -174805539 - L2 LINE L2 -208 3064 2954 190 299 93 10 chrX 2168965 2169062 -174805078 - MER5A DNA MER1_type -11 178 74 1188 173 31 126 chrX 2169309 2169487 -174804653 - AluJo SINE Alu -8 304 168 1815 146 7 0 chrX 2169487 2169761 -174804379 + AluSx SINE Alu 1 276 -36 1188 173 31 126 chrX 2169761 2169900 -174804240 - AluJo SINE Alu -144 168 17 569 196 227 6 chrX 2170232 2170395 -174803745 + MER20 DNA MER1_type 2 200 -19 285 211 0 211 chrX 2170460 2170593 -174803547 + L2 LINE L2 3202 3306 -7 319 266 49 28 chrX 2170622 2170765 -174803375 - L1MC/D LINE L1 -2080 5728 5583 2310 124 0 0 chrX 2170797 2171103 -174803037 + AluSx SINE Alu 1 306 -6 441 272 178 47 chrX 2171114 2171412 -174802728 + L1ME3A LINE L1 5632 5968 -202 335 219 12 170 chrX 2171684 2171747 -174802393 - MER112 DNA MER1_type -45 215 144 2306 103 7 0 chrX 2171747 2172049 -174802091 + AluSx SINE Alu 7 310 -2 335 219 12 170 chrX 2172049 2172193 -174801947 - MER112 DNA MER1_type -116 144 -21 2150 104 30 7 chrX 2172193 2172490 -174801650 - AluSx SINE Alu -8 304 1 2345 94 0 0 chrX 2172491 2172788 -174801352 - AluSx SINE Alu -15 297 1 335 219 12 170 chrX 2172788 2172824 -174801316 - MER112 DNA MER1_type -212 48 8 1486 148 100 35 chrX 2173877 2174105 -174800035 - MSTA LTR MaLR -1 427 172 2569 53 3 0 chrX 2174105 2174407 -174799733 - AluY SINE Alu -7 304 2 1486 148 100 35 chrX 2174407 2174488 -174799652 - MSTA LTR MaLR -256 172 98 2578 163 28 79 chrX 2174933 2175542 -174798598 - L1MB3 LINE L1 -4 6179 5602 1689 180 28 71 chrX 2175519 2175612 -174798528 - L1MB3 LINE L1 -1755 4391 4296 * 1968 137 46 0 chrX 2175612 2175897 -174798243 - AluSx SINE Alu -14 298 1 1689 180 28 71 chrX 2175897 2175944 -174798196 - L1MB3 LINE L1 -1850 4296 4249 1895 115 0 95 chrX 2175944 2176282 -174797858 - AluSx SINE Alu -6 306 1 1689 180 28 71 chrX 2176282 2176673 -174797467 - L1MB3 LINE L1 -1897 4249 3882 1863 157 43 4 chrX 2177328 2177608 -174796532 + AluSx SINE Alu 1 291 -21 2256 97 0 19 chrX 2177714 2178022 -174796118 + AluY SINE Alu 1 302 -9 804 261 0 0 chrX 2178132 2178297 -174795843 - AluJb SINE Alu -11 301 137 2190 104 3 14 chrX 2178430 2178727 -174795413 - AluSx SINE Alu -18 294 1 358 317 6 19 chrX 2178895 2179220 -174794920 + (CA)n Simple_repeat Simple_repeat 1 320 0 367 296 0 28 chrX 2179472 2179648 -174794492 + (CA)n Simple_repeat Simple_repeat 1 171 0 1453 229 65 86 chrX 2180121 2180567 -174793573 - MER67D LTR ERV1 0 514 79 1995 169 40 33 chrX 2180567 2180756 -174793384 + L1MA4 LINE L1 5847 6033 -267 1721 157 0 0 chrX 2180756 2181005 -174793135 - AluJo SINE Alu -16 296 48 1995 169 40 33 chrX 2181005 2181265 -174792875 + L1MA4 LINE L1 6033 6299 -1 1453 229 65 86 chrX 2181265 2181343 -174792797 - MER67D LTR ERV1 -435 79 1 2391 109 34 14 chrX 2181383 2181740 -174792400 + THE1B LTR MaLR 1 364 0 465 137 0 0 chrX 2181791 2181864 -174792276 - AluJo SINE Alu -6 306 234 1183 160 48 0 chrX 2182247 2182434 -174791706 - AluJo SINE Alu -69 243 48 2182 117 7 23 chrX 2182661 2182970 -174791170 - AluSx SINE Alu -8 304 1 1884 127 67 11 chrX 2183195 2183479 -174790661 + AluSx SINE Alu 3 302 -10 315 128 51 26 chrX 2183726 2183843 -174790297 + (TCTA)n Simple_repeat Simple_repeat 1 120 0 3178 169 50 13 chrX 2183874 2184496 -174789644 + L1PB4 LINE L1 5499 6143 -13 1323 201 18 25 chrX 2185038 2185322 -174788818 + AluJo SINE Alu 7 288 -24 273 235 25 12 chrX 2185613 2185694 -174788446 - MLT1C LTR MaLR -4 463 382 2390 57 0 0 chrX 2186531 2186829 -174787311 - AluY SINE Alu -13 298 1 692 92 20 0 chrX 2187663 2187761 -174786379 + FLAM_C SINE Alu 23 122 -21 2298 81 3 0 chrX 2187769 2188076 -174786064 - AluSx SINE Alu -4 308 1 1478 194 7 0 chrX 2188096 2188380 -174785760 + AluJo SINE Alu 3 288 -24 757 71 50 0 chrX 2188984 2189083 -174785057 - AluSq/x SINE Alu -205 108 5 1339 158 41 15 chrX 2189099 2189365 -174784775 + L1MA8 LINE L1 6017 6289 -2 2207 109 0 0 chrX 2189375 2189677 -174784463 + AluSx SINE Alu 1 302 -10 1582 138 30 0 chrX 2189707 2189976 -174784164 - L1MA5A LINE L1 0 6297 6021 1717 147 97 27 chrX 2190314 2190597 -174783543 + MLT1A1 LTR MaLR 1 314 -51 1576 83 12 51 chrX 2190597 2190850 -174783290 + MER75B DNA T2_type 1 243 0 1717 147 97 27 chrX 2190850 2190906 -174783234 + MLT1A1 LTR MaLR 314 365 0 1072 151 0 0 chrX 2191027 2191199 -174782941 - AluSq SINE Alu 0 313 142 1051 184 71 21 chrX 2191358 2191597 -174782543 - AluJb SINE Alu -59 253 3 1321 172 78 54 chrX 2191771 2192067 -174782073 - AluJo SINE Alu -9 303 1 1215 176 9 0 chrX 2192162 2192372 -174781768 - L1PA16 LINE L1 -9 6157 5946 204 209 0 47 chrX 2193143 2193229 -174780911 + (TTTG)n Simple_repeat Simple_repeat 2 83 0 * 221 134 60 45 chrX 2193169 2193236 -174780904 + (GTTTG)n Simple_repeat Simple_repeat 2 69 0 3685 131 23 29 chrX 2193405 2193482 -174780658 - L1PA16 LINE L1 -24 6142 6066 2001 186 41 117 chrX 2193482 2194142 -174779998 - LTR9 LTR ERV1 0 612 3 3685 131 23 29 chrX 2194142 2194382 -174779758 - L1PA16 LINE L1 -100 6066 5166 609 279 59 50 chrX 2194382 2194657 -174779483 - L1MD3 LINE L1 -2169 5826 5546 2625 74 148 3 chrX 2194657 2195048 -174779092 + LTR7 LTR ERV1 1 448 -2 609 279 59 50 chrX 2195048 2195130 -174779010 - L1MD3 LINE L1 -2449 5546 5466 549 61 0 49 chrX 2195436 2195487 -174778653 - MADE1 DNA Mariner -1 79 27 1799 153 0 0 chrX 2195487 2195768 -174778372 + AluSx SINE Alu 1 281 -31 243 0 0 0 chrX 2195769 2195796 -174778344 + (CA)n Simple_repeat Simple_repeat 2 28 0 549 61 0 49 chrX 2195796 2195824 -174778316 - MADE1 DNA Mariner -52 28 2 374 120 0 0 chrX 2196801 2196851 -174777289 + Alu SINE Alu 1 50 -250 352 120 0 0 chrX 2196886 2196936 -174777204 + Alu SINE Alu 1 50 -250 1617 99 0 5 chrX 2196971 2197194 -174776946 + AluSq SINE Alu 1 222 -91 218 146 42 0 chrX 2197208 2197256 -174776884 + G-rich Low_complexity Low_complexity 2 51 0 1230 109 6 0 chrX 2197422 2197596 -174776544 + AluSg/x SINE Alu 122 296 -16 1366 212 7 0 chrX 2197698 2197986 -174776154 - AluJo SINE Alu -22 290 1 1801 216 49 28 chrX 2198065 2198100 -174776040 - L1MB5 LINE L1 -8 6166 6133 2143 125 0 0 chrX 2198100 2198411 -174775729 - AluSx SINE Alu 0 312 2 1801 216 49 28 chrX 2198411 2198805 -174775335 - L1MB5 LINE L1 -41 6133 5728 329 54 0 0 chrX 2199291 2199393 -174774747 - Alu SINE Alu 0 325 234 270 204 0 56 chrX 2199391 2199437 -174774703 - AluSg/x SINE Alu -123 177 133 * 1934 160 0 0 chrX 2199437 2199744 -174774396 - AluSx SINE Alu -5 307 1 24 32 0 0 chrX 2199751 2199782 -174774358 + AT_rich Low_complexity Low_complexity 1 31 0 3225 135 4 4 chrX 2199782 2200301 -174773839 - L1PA16 LINE L1 -1 6165 5647 2193 229 7 37 chrX 2200314 2200439 -174773701 - L1MB7 LINE L1 -9 6175 6048 2113 105 10 0 chrX 2200439 2200745 -174773395 - AluSx SINE Alu -3 309 1 2193 229 7 37 chrX 2200745 2201182 -174772958 - L1MB7 LINE L1 -136 6048 5630 342 309 63 37 chrX 2201184 2201375 -174772765 + MIR SINE MIR 67 262 0 653 182 108 140 chrX 2201473 2201808 -174772332 + MLT1C LTR MaLR 1 324 -143 741 203 98 87 chrX 2201817 2202103 -174772037 + MLT1C LTR MaLR 45 333 -134 675 200 21 28 chrX 2202361 2202506 -174771634 + MLT1C LTR MaLR 316 459 -8 969 129 0 0 chrX 2202549 2202689 -174771451 + AluJo SINE Alu 2 141 -171 2117 109 0 22 chrX 2202689 2203002 -174771138 + AluSx SINE Alu 1 306 -6 2071 112 20 0 chrX 2203010 2203315 -174770825 + AluSx SINE Alu 1 311 -1 1285 178 5 0 chrX 2203423 2203642 -174770498 + AluJo SINE Alu 1 220 -92 237 214 0 18 chrX 2203642 2203698 -174770442 + AluJb SINE Alu 86 140 -162 1337 163 96 4 chrX 2203701 2203952 -174770188 + AluJo SINE Alu 9 282 -30 697 136 36 0 chrX 2205009 2205119 -174769021 + FLAM_C SINE Alu 12 125 -18 600 159 28 9 chrX 2205122 2205229 -174768911 - L1MB3 LINE L1 -10 6173 6065 1455 186 4 8 chrX 2205378 2205642 -174768498 - AluJo SINE Alu -45 267 5 736 217 63 10 chrX 2205796 2205991 -174768149 + MLT1B LTR MaLR 1 197 -177 902 186 50 25 chrX 2205991 2206190 -174767950 - L1MB1 LINE L1 -12 6156 5953 767 214 0 0 chrX 2206228 2206368 -174767772 + MLT1B LTR MaLR 193 332 -58 1981 121 175 22 chrX 2206456 2206827 -174767313 - MSTA LTR MaLR 0 428 1 2681 184 29 6 chrX 2207149 2207665 -174766475 + L1MB1 LINE L1 5586 6113 -76 2480 94 9 0 chrX 2207665 2208003 -174766137 + L1PB1 LINE L1 5800 6144 -7 377 174 43 0 chrX 2208024 2208093 -174766047 + L1MB1 LINE L1 6092 6163 -5 22 0 0 0 chrX 2208415 2208437 -174765703 + AT_rich Low_complexity Low_complexity 1 22 0 213 132 0 0 chrX 2208919 2208957 -174765183 + (TCC)n Simple_repeat Simple_repeat 3 40 0 255 86 17 35 chrX 2209164 2209222 -174764918 + (TCC)n Simple_repeat Simple_repeat 1 57 0 615 206 12 8 chrX 2209243 2209480 -174764660 + CT-rich Low_complexity Low_complexity 1 237 0 1230 203 31 157 chrX 2209704 2209754 -174764386 + L1MB5 LINE L1 5613 5668 -506 1783 114 96 7 chrX 2209754 2210034 -174764106 + AluSx SINE Alu 1 305 -7 708 170 0 30 chrX 2210044 2210179 -174763961 + FLAM_C SINE Alu 1 131 -2 1230 203 31 157 chrX 2210179 2210239 -174763901 + L1MB5 LINE L1 5678 5744 -430 1784 158 10 0 chrX 2210239 2210542 -174763598 + AluJb SINE Alu 1 306 -6 1230 203 31 157 chrX 2210542 2210907 -174763233 + L1MB5 LINE L1 5744 6004 -170 2284 94 0 0 chrX 2210907 2211206 -174762934 + AluSx SINE Alu 6 304 -8 1230 203 31 157 chrX 2211206 2211356 -174762784 + L1MB5 LINE L1 6004 6171 -3 4414 135 12 25 chrX 2211825 2212545 -174761595 - MER50 LTR ERV1 -23 711 1 2496 73 0 0 chrX 2212549 2212863 -174761277 + MER41A LTR ERV1 1 314 -240 282 116 0 0 chrX 2213308 2213351 -174760789 + (T)n Simple_repeat Simple_repeat 1 43 0 712 216 9 0 chrX 2213991 2214139 -174760001 + L1MB2 LINE L1 5772 5930 -232 2284 122 20 58 chrX 2214141 2214293 -174759847 - LTR56 LTR ERV1 0 445 289 966 154 0 0 chrX 2214293 2214442 -174759698 - FRAM SINE Alu -17 149 1 2284 122 20 58 chrX 2214442 2214761 -174759379 - LTR56 LTR ERV1 -156 289 9 285 247 27 0 chrX 2214767 2214850 -174759290 + L1MB2 LINE L1 5928 6012 -167 1655 168 7 3 chrX 2214929 2215220 -174758920 + AluJb SINE Alu 21 312 0 1337 140 5 10 chrX 2215253 2215460 -174758680 + THE1B LTR MaLR 159 364 0 4130 134 11 11 chrX 2215555 2215996 -174758144 + MER41B LTR ERV1 1 444 -191 1963 173 16 16 chrX 2215996 2216371 -174757769 - THE1C LTR MaLR 0 375 1 4130 134 11 11 chrX 2216371 2216564 -174757576 + MER41B LTR ERV1 443 635 0 469 160 21 0 chrX 2217077 2217171 -174756969 + LTR26 LTR ERV1 1 96 -507 799 282 7 22 chrX 2217431 2217548 -174756592 + L1MD2 LINE L1 6077 6194 -165 1997 134 44 49 chrX 2217548 2217914 -174756226 + THE1B LTR MaLR 1 364 0 799 282 7 22 chrX 2217914 2218073 -174756067 + L1MD2 LINE L1 6194 6349 -10 3008 201 36 30 chrX 2218339 2218981 -174755159 + MER82 DNA MER2_type 7 652 -1 290 317 99 32 chrX 2218988 2219396 -174754744 + MLT1E LTR MaLR 20 499 -96 640 191 95 0 chrX 2220821 2220947 -174753193 - MLT1E1 LTR MaLR -110 544 407 1927 178 31 3 chrX 2221310 2221665 -174752475 - MLT1A1 LTR MaLR 0 365 1 2185 231 77 58 chrX 2221972 2222436 -174751704 - MLT1E1 LTR MaLR 0 654 173 1979 87 53 20 chrX 2222436 2222736 -174751404 - AluSq SINE Alu -1 312 3 2185 231 77 58 chrX 2222736 2222907 -174751233 - MLT1E1 LTR MaLR -481 173 7 3580 156 114 36 chrX 2222907 2223655 -174750485 - L1PA16 LINE L1 -18 6148 5343 2064 98 11 0 chrX 2223661 2223972 -174750168 + AluSx SINE Alu 1 314 0 958 144 0 54 chrX 2223972 2224186 -174749954 + AluSg/x SINE Alu 124 328 0 2347 74 3 3 chrX 2225098 2225407 -174748733 - AluSx SINE Alu -3 309 1 3422 92 54 75 chrX 2225465 2225683 -174748457 + L1PA16 LINE L1 5569 5790 -376 2145 89 20 3 chrX 2225683 2225987 -174748153 + AluSg SINE Alu 1 309 -1 3422 92 54 75 chrX 2225987 2226377 -174747763 + L1PA16 LINE L1 5790 6164 -2 2524 55 0 0 chrX 2226392 2226703 -174747437 + AluY SINE Alu 1 311 0 510 299 77 30 chrX 2226749 2226983 -174747157 + MLT1J LTR MaLR 266 510 -1 2378 178 17 5 chrX 2227634 2228056 -174746084 + MSTB1 LTR MaLR 6 432 0 1585 113 20 24 chrX 2228279 2228526 -174745614 + AluJo SINE Alu 50 295 -17 2352 81 0 0 chrX 2228970 2229265 -174744875 + AluSq SINE Alu 3 297 -16 1029 190 44 0 chrX 2229541 2229767 -174744373 + L1MB5 LINE L1 5939 6174 0 4018 110 2 2 chrX 2230059 2230613 -174743527 + MER41A LTR ERV1 1 554 0 1787 205 9 36 chrX 2230778 2231188 -174742952 + L1MC2 LINE L1 5937 6337 -7 1955 117 11 65 chrX 2231188 2231539 -174742601 + L1PB2 LINE L1 5817 6148 -3 2098 104 0 24 chrX 2231696 2231983 -174742157 + AluSx SINE Alu 1 280 -32 258 32 0 0 chrX 2231985 2232016 -174742124 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 225 94 0 0 chrX 2232051 2232083 -174742057 + (ATG)n Simple_repeat Simple_repeat 2 33 0 1438 126 44 139 chrX 2232084 2232219 -174741921 + AluJo SINE Alu 1 90 -222 2256 112 3 3 chrX 2232219 2232523 -174741617 + AluSg SINE Alu 1 304 -6 1438 126 44 139 chrX 2232523 2232704 -174741436 + AluJo SINE Alu 90 287 -25 2300 112 0 0 chrX 2233201 2233497 -174740643 - AluSx SINE Alu -16 296 1 906 125 0 8 chrX 2233523 2233651 -174740489 + FLAM_C SINE Alu 1 127 -16 899 239 126 60 chrX 2234351 2234535 -174739605 + L1ME3A LINE L1 5145 5315 -855 2266 117 0 0 chrX 2234535 2234835 -174739305 + AluSx SINE Alu 1 300 -12 899 239 126 60 chrX 2234835 2234846 -174739294 + L1ME3A LINE L1 5315 5324 -846 2080 142 7 3 chrX 2234846 2235155 -174738985 + AluSx SINE Alu 1 310 -2 899 239 126 60 chrX 2235155 2235612 -174738528 + L1ME3A LINE L1 5324 5858 -312 * 1990 217 41 29 chrX 2235225 2235713 -174738427 + L1MA3 LINE L1 5477 5970 -335 * 3970 126 35 0 chrX 2235280 2235884 -174738256 + L1PA16 LINE L1 5522 6146 -20 849 192 18 0 chrX 2235893 2236060 -174738080 + L1MB3 LINE L1 5428 5597 -577 406 143 16 0 chrX 2236060 2236123 -174738017 + Charlie1 DNA MER1_type 2697 2760 -1 856 222 6 6 chrX 2236504 2236684 -174737456 + MER58A DNA MER1_type 45 224 0 2201 193 30 17 chrX 2236891 2237353 -174736787 + MER89 LTR ERV1 1 468 -91 519 186 28 11 chrX 2237417 2237594 -174736546 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 682 166 29 0 chrX 2237654 2237829 -174736311 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 307 208 42 0 chrX 2237843 2237963 -174736177 + (TGGA)n Simple_repeat Simple_repeat 3 127 0 615 153 5 53 chrX 2237982 2238171 -174735969 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 397 218 11 0 chrX 2238183 2238270 -174735870 + MER89 LTR ERV1 472 559 0 23 54 0 0 chrX 2239123 2239160 -174734980 + AT_rich Low_complexity Low_complexity 1 37 0 1660 196 3 20 chrX 2239396 2239697 -174734443 - AluJo SINE Alu -16 296 1 581 174 22 28 chrX 2240490 2240817 -174733323 + (TCCA)n Simple_repeat Simple_repeat 1 325 0 2837 202 50 5 chrX 2241011 2241596 -174732544 + L1MB3 LINE L1 5566 6176 -7 491 225 0 5 chrX 2242051 2242273 -174731867 + (TGGA)n Simple_repeat Simple_repeat 1 220 0 253 215 25 33 chrX 2242247 2242368 -174731772 + (TGAA)n Simple_repeat Simple_repeat 4 123 0 * 478 242 6 6 chrX 2242402 2242580 -174731560 + (TGGA)n Simple_repeat Simple_repeat 1 178 0 625 217 7 0 chrX 2242595 2242873 -174731267 + (TGGA)n Simple_repeat Simple_repeat 1 280 0 801 170 0 11 chrX 2242898 2243270 -174730870 + (TGGA)n Simple_repeat Simple_repeat 1 367 0 312 352 0 0 chrX 2243271 2243362 -174730778 + (TGGG)n Simple_repeat Simple_repeat 1 91 0 705 208 0 0 chrX 2243363 2243531 -174730609 + (TGGA)n Simple_repeat Simple_repeat 2 169 0 471 202 0 0 chrX 2243543 2243657 -174730483 + (TGGA)n Simple_repeat Simple_repeat 2 115 0 192 77 0 0 chrX 2243667 2243693 -174730447 + (TG)n Simple_repeat Simple_repeat 1 26 0 2719 45 0 0 chrX 2244408 2244719 -174729421 - AluY SINE Alu 0 311 1 685 58 8 91 chrX 2244721 2244842 -174729298 + LTR36 LTR ERV1 11 121 -490 2279 79 3 0 chrX 2244843 2245134 -174729006 + AluY SINE Alu 1 292 -19 1169 127 12 0 chrX 2245134 2245300 -174728840 + LTR36 LTR ERV1 444 611 0 2242 116 0 3 chrX 2245532 2245833 -174728307 + AluSx SINE Alu 1 300 -12 2154 119 16 0 chrX 2245859 2246162 -174727978 + AluSx SINE Alu 1 308 -4 1834 198 98 30 chrX 2246636 2246761 -174727379 - MLT1D LTR MaLR -2 503 388 1730 170 3 7 chrX 2246761 2247044 -174727096 + AluJo SINE Alu 1 282 -30 1834 198 98 30 chrX 2247044 2247389 -174726751 - MLT1D LTR MaLR -117 388 1 484 168 11 0 chrX 2247537 2247632 -174726508 - L1PA11 LINE L1 0 6174 6079 444 164 0 0 chrX 2247632 2247705 -174726435 - L1P4 LINE L1 -680 5488 5416 * 4556 127 13 1 chrX 2247681 2248357 -174725783 - L1PA11 LINE L1 -81 6093 5410 1157 171 9 28 chrX 2248645 2248856 -174725284 + AluJo SINE Alu 87 293 -19 1116 124 74 109 chrX 2248869 2249152 -174724988 + L1MA8 LINE L1 6019 6291 0 207 281 0 0 chrX 2249174 2249238 -174724902 + A-rich Low_complexity Low_complexity 1 64 0 2314 102 0 0 chrX 2249238 2249531 -174724609 + AluSx SINE Alu 1 293 -19 674 186 0 0 chrX 2249617 2249730 -174724410 + FLAM_A SINE Alu 25 137 -5 2172 133 0 0 chrX 2249754 2250055 -174724085 - AluSx SINE Alu -11 301 1 605 173 27 0 chrX 2250184 2250293 -174723847 - MLT1D LTR MaLR -6 499 388 2085 145 117 25 chrX 2250293 2250656 -174723484 - MSTA LTR MaLR 0 428 25 2746 89 14 3 chrX 2250656 2251025 -174723115 + THE1C LTR MaLR 3 375 0 2085 145 117 25 chrX 2251025 2251053 -174723087 - MSTA LTR MaLR -403 25 1 1831 220 32 3 chrX 2251053 2251430 -174722710 - MLT1D LTR MaLR -113 392 5 964 162 52 0 chrX 2251762 2251916 -174722224 - AluJo SINE Alu -30 282 121 52 0 0 0 chrX 2251948 2252000 -174722140 + AT_rich Low_complexity Low_complexity 1 52 0 4479 148 3 1 chrX 2252012 2252709 -174721431 + L1PA15 LINE L1 5467 6164 -1 2123 86 61 0 chrX 2252714 2252993 -174721147 + AluSx SINE Alu 1 296 -16 186 43 0 0 chrX 2253013 2253036 -174721104 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1413 206 11 11 chrX 2253038 2253320 -174720820 - AluJo SINE Alu -30 282 1 401 322 117 23 chrX 2253438 2253588 -174720552 - HAL1 LINE L1 -145 2362 2227 321 26 0 0 chrX 2253588 2253626 -174720514 + (CA)n Simple_repeat Simple_repeat 1 38 0 401 322 117 23 chrX 2253626 2253990 -174720150 - HAL1 LINE L1 -280 2227 1800 192 279 0 51 chrX 2254011 2254090 -174720050 + MIR SINE MIR 82 156 -106 376 236 115 115 chrX 2254171 2254510 -174719630 - HAL1 LINE L1 -698 1809 1471 2384 96 0 0 chrX 2254524 2254825 -174719315 - AluSx SINE Alu -11 301 1 433 208 3 44 chrX 2254833 2255137 -174719003 + CT-rich Low_complexity Low_complexity 1 291 0 1794 159 7 17 chrX 2255288 2255590 -174718550 + AluJb SINE Alu 1 299 -13 273 29 0 0 chrX 2255954 2255988 -174718152 + (TG)n Simple_repeat Simple_repeat 1 34 0 1935 140 25 3 chrX 2256075 2256396 -174717744 + MLT1A1 LTR MaLR 1 328 -37 257 221 13 39 chrX 2256780 2256857 -174717283 + L1M3 LINE L1 5633 5707 -473 1791 185 7 7 chrX 2256917 2257214 -174716926 - AluJb SINE Alu -15 297 1 2124 117 0 0 chrX 2257226 2257531 -174716609 - AluSx SINE Alu 0 305 1 1610 96 9 0 chrX 2257537 2257767 -174716373 - L1PA14 LINE L1 -2 6159 5928 303 49 0 0 chrX 2258120 2258161 -174715979 + (TA)n Simple_repeat Simple_repeat 2 42 0 258 111 0 0 chrX 2258161 2258201 -174715939 + (GA)n Simple_repeat Simple_repeat 1 40 0 1674 96 23 0 chrX 2258390 2258610 -174715530 - AluSg/x SINE Alu -4 308 84 1719 185 3 3 chrX 2258620 2258923 -174715217 - AluJo SINE Alu -9 303 1 1810 166 13 17 chrX 2259025 2259326 -174714814 + AluJo SINE Alu 1 300 -12 189 0 0 0 chrX 2259495 2259516 -174714624 + (CAAAAA)n Simple_repeat Simple_repeat 4 24 0 979 192 6 0 chrX 2259944 2260126 -174714014 - AluJo SINE Alu -7 305 123 249 177 32 32 chrX 2260163 2260207 -174713933 - L1M LINE L1 -2398 5410 5364 1948 115 21 10 chrX 2260207 2260495 -174713645 - AluSx SINE Alu -21 291 1 249 177 32 32 chrX 2260495 2260512 -174713628 - L1M LINE L1 -2443 5365 5349 554 67 0 0 chrX 2260555 2260630 -174713510 - L1PA5 LINE L1 0 6154 6080 4389 141 53 87 chrX 2260630 2261105 -174713035 - L1MC1 LINE L1 -2 6331 5841 1948 153 40 0 chrX 2261105 2261405 -174712735 - AluJo SINE Alu 0 312 1 4389 141 53 87 chrX 2261405 2261466 -174712674 - L1MC1 LINE L1 -492 5841 5779 2437 93 0 0 chrX 2261466 2261768 -174712372 - AluSg SINE Alu -8 302 1 2319 100 3 3 chrX 2261770 2262081 -174712059 - AluSx SINE Alu -1 311 1 4389 141 53 87 chrX 2262081 2262491 -174711649 - L1MC1 LINE L1 -555 5778 5414 523 277 128 36 chrX 2262494 2262692 -174711448 - L1ME3A LINE L1 -224 5946 5768 2227 141 30 22 chrX 2262692 2263053 -174711087 + THE1B LTR MaLR 1 364 0 523 277 128 36 chrX 2263053 2263403 -174710737 - L1ME3A LINE L1 -402 5768 5337 2093 139 3 0 chrX 2263419 2263713 -174710427 - AluJo SINE Alu -13 299 5 336 304 172 25 chrX 2263715 2264430 -174709710 - L1ME3A LINE L1 -2064 4082 3247 1471 116 9 9 chrX 2264430 2264646 -174709494 - AluSq SINE Alu -16 297 82 336 304 172 25 chrX 2264646 2264691 -174709449 - L1ME3A LINE L1 -2899 3247 3210 43 108 0 0 chrX 2264697 2264873 -174709267 + AT_rich Low_complexity Low_complexity 1 176 0 919 231 30 0 chrX 2265926 2266125 -174708015 + MER2 DNA MER2_type 1 205 -140 1139 161 9 28 chrX 2266127 2266338 -174707802 - AluJo SINE Alu -10 302 96 * 1299 131 0 53 chrX 2266336 2266542 -174707598 - AluSx SINE Alu -117 195 1 1057 128 0 0 chrX 2266841 2266989 -174707151 + FRAM SINE Alu 11 158 -18 672 194 7 28 chrX 2267241 2267385 -174706755 - MLT1C LTR MaLR 0 467 327 4363 153 33 30 chrX 2267385 2267505 -174706635 - LTR39 LTR ERV1 -28 755 637 1942 169 0 0 chrX 2267505 2267813 -174706327 + AluJb SINE Alu 1 308 -4 2307 62 0 36 chrX 2267813 2268117 -174706023 + AluY SINE Alu 1 293 -18 4363 153 33 30 chrX 2268117 2268748 -174705392 - LTR39 LTR ERV1 -145 638 1 3133 100 27 11 chrX 2268749 2269063 -174705077 + MER41B LTR ERV1 1 326 -309 1710 168 58 9 chrX 2269063 2269390 -174704750 + MER61A LTR ERV1 1 343 0 3133 100 27 11 chrX 2269390 2269524 -174704616 + MER41B LTR ERV1 326 456 -179 868 139 0 29 chrX 2269527 2269664 -174704476 + AluSg/x SINE Alu 165 297 -15 2298 103 0 0 chrX 2269686 2269978 -174704162 + AluSx SINE Alu 2 293 -19 729 219 2 26 chrX 2270125 2270253 -174703887 - L1MB3 LINE L1 -212 5956 5835 2243 98 10 7 chrX 2270253 2270558 -174703582 - AluSq SINE Alu -7 306 1 729 219 2 26 chrX 2270558 2270639 -174703501 - L1MB3 LINE L1 -333 5835 5754 612 220 22 78 chrX 2270698 2270930 -174703210 + MER20 DNA MER1_type 1 219 0 1985 125 14 3 chrX 2271137 2271426 -174702714 - AluSx SINE Alu -20 292 1 231 170 0 0 chrX 2271534 2271581 -174702559 + L1MC4 LINE L1 6659 6705 -1337 2400 86 3 3 chrX 2271756 2272060 -174702080 + AluSx SINE Alu 1 304 -8 2248 107 0 0 chrX 2272179 2272470 -174701670 - AluSx SINE Alu -21 291 1 1260 184 99 64 chrX 2272564 2272698 -174701442 + AluJo SINE Alu 1 129 -183 185 0 40 0 chrX 2272698 2272723 -174701417 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1260 184 99 64 chrX 2272723 2272870 -174701270 + AluJo SINE Alu 129 292 -20 1435 211 43 0 chrX 2274226 2274525 -174699615 - AluJo SINE Alu 0 312 1 2161 98 0 0 chrX 2274709 2274983 -174699157 + AluSx SINE Alu 1 274 -38 2419 76 3 17 chrX 2274985 2275287 -174698853 - AluSq SINE Alu -15 298 1 1348 144 5 5 chrX 2275289 2275497 -174698643 + AluJb SINE Alu 102 309 -3 2272 88 0 14 chrX 2275767 2276064 -174698076 - AluSc SINE Alu -16 293 1 30 0 0 0 chrX 2276075 2276105 -174698035 + AT_rich Low_complexity Low_complexity 1 30 0 870 122 0 29 chrX 2276107 2276246 -174697894 - L1MA2 LINE L1 0 6304 6170 1598 199 0 0 chrX 2276265 2276531 -174697609 - AluJo SINE Alu -24 288 23 2445 104 0 0 chrX 2277013 2277322 -174696818 - AluSx SINE Alu -3 309 1 886 156 0 21 chrX 2277413 2277554 -174696586 + FLAM_C SINE Alu 1 138 -5 2586 54 0 0 chrX 2277621 2277918 -174696222 + AluY SINE Alu 1 297 -14 2118 110 0 4 chrX 2278066 2278380 -174695760 + AluSg SINE Alu 1 313 0 195 42 0 0 chrX 2279232 2279256 -174694884 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1801 184 0 7 chrX 2279278 2279577 -174694563 + AluJo SINE Alu 1 297 -15 330 87 0 0 chrX 2279851 2279897 -174694243 + (TTCC)n Simple_repeat Simple_repeat 1 46 0 1793 178 10 24 chrX 2279897 2280195 -174693945 - AluJo SINE Alu -18 294 1 1536 165 3 93 chrX 2280680 2281013 -174693127 + AluJo SINE Alu 1 303 -9 1374 144 137 46 chrX 2281223 2281486 -174692654 - AluJo SINE Alu -17 295 9 183 100 0 0 chrX 2282239 2282269 -174691871 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 2430 85 0 0 chrX 2282272 2282591 -174691549 - L1PA13 LINE L1 -19 6144 5826 198 0 0 0 chrX 2282591 2282613 -174691527 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 1164 196 36 5 chrX 2282613 2282833 -174691307 - AluJo SINE Alu -28 284 58 2394 89 0 3 chrX 2282842 2283144 -174690996 - AluY SINE Alu -10 301 1 1923 117 3 57 chrX 2283180 2283508 -174690632 - AluSq SINE Alu 0 316 5 215 163 0 20 chrX 2284289 2284338 -174689802 + T-rich Low_complexity Low_complexity 2 49 0 305 314 0 59 chrX 2284880 2284982 -174689158 + L1MC4 LINE L1 6614 6709 -1333 * 324 252 37 30 chrX 2284903 2285018 -174689122 - L1MCa LINE L1 -1337 6985 1973 234 154 66 22 chrX 2285056 2285147 -174688993 + (TA)n Simple_repeat Simple_repeat 1 95 0 1383 72 0 0 chrX 2285156 2285322 -174688818 + AluSg SINE Alu 1 166 -144 682 158 9 11 chrX 2285338 2285499 -174688641 + L1PB4 LINE L1 5782 5901 -255 25 102 0 0 chrX 2285499 2285587 -174688553 + AT_rich Low_complexity Low_complexity 1 88 0 316 194 0 82 chrX 2285590 2285688 -174688452 - L1MC4 LINE L1 -1339 6703 6614 183 129 0 0 chrX 2285688 2285719 -174688421 + (CA)n Simple_repeat Simple_repeat 2 32 0 1265 163 112 47 chrX 2285765 2286041 -174688099 - AluJb SINE Alu -8 294 1 281 229 33 57 chrX 2287265 2287387 -174686753 + MER53 DNA DNA 37 155 -34 314 297 69 14 chrX 2287498 2287643 -174686497 - L1MD2 LINE L1 -1 6358 6206 1048 110 0 14 chrX 2287818 2287963 -174686177 + AluSq/x SINE Alu 1 143 -169 30 45 0 0 chrX 2288387 2288431 -174685709 + GC_rich Low_complexity Low_complexity 1 44 0 315 243 20 15 chrX 2290020 2290227 -174683913 + CT-rich Low_complexity Low_complexity 1 208 0 2069 102 0 7 chrX 2291282 2291557 -174682583 + AluSx SINE Alu 1 273 -39 1620 183 23 20 chrX 2291868 2292169 -174681971 + AluJb SINE Alu 1 302 -10 374 297 61 0 chrX 2292586 2292751 -174681389 - L1MD3 LINE L1 -19 7976 7802 1121 129 0 23 chrX 2292752 2292923 -174681217 - FRAM SINE Alu -10 166 1 344 260 7 84 chrX 2292923 2293077 -174681063 - L1MD2 LINE L1 -176 6183 6042 2108 99 57 0 chrX 2293091 2293373 -174680767 - AluSp SINE Alu -15 298 1 2052 164 23 3 chrX 2293584 2293938 -174680202 - MLT1A1 LTR MaLR -4 361 1 209 106 0 64 chrX 2294288 2294335 -174679805 + (TTAAA)n Simple_repeat Simple_repeat 1 44 0 449 167 0 0 chrX 2294365 2294437 -174679703 - FLAM_A SINE Alu -26 116 45 199 333 30 30 chrX 2294439 2294538 -174679602 + L2 LINE L2 3191 3289 -24 315 286 95 19 chrX 2294556 2294661 -174679479 + MER81 DNA DNA 1 113 -1 1885 148 7 13 chrX 2294802 2295106 -174679034 - AluJb SINE Alu -4 308 7 728 157 35 0 chrX 2295345 2295460 -174678680 + AluJb SINE Alu 176 294 -18 1722 162 17 24 chrX 2295469 2295766 -174678374 + AluJo SINE Alu 1 295 -17 2469 64 0 19 chrX 2295964 2296275 -174677865 + AluY SINE Alu 1 305 -6 1737 194 14 14 chrX 2296529 2296879 -174677261 + MLT1A1 LTR MaLR 14 363 -2 240 292 0 0 chrX 2296969 2297034 -174677106 - MLT1E2 LTR MaLR 0 626 562 1285 169 8 8 chrX 2297036 2297284 -174676856 + L1MA6 LINE L1 5675 5922 -378 1699 142 31 17 chrX 2297285 2297573 -174676567 - AluJb SINE Alu -20 292 1 2101 134 3 13 chrX 2297984 2298298 -174675842 + AluSx SINE Alu 1 311 -1 1132 124 0 28 chrX 2298649 2298826 -174675314 - FRAM SINE Alu -9 167 1 1730 179 10 17 chrX 2298972 2299268 -174674872 + AluJb SINE Alu 13 306 -6 4199 101 0 0 chrX 2299825 2300379 -174673761 - MER41A LTR ERV1 0 554 1 1897 168 24 0 chrX 2300557 2300855 -174673285 + AluJo SINE Alu 8 312 0 1671 158 39 32 chrX 2301053 2301183 -174672957 + AluJb SINE Alu 1 129 -183 207 0 0 0 chrX 2301183 2301206 -174672934 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1671 158 39 32 chrX 2301206 2301385 -174672755 + AluJb SINE Alu 129 312 0 189 196 0 0 chrX 2301393 2301439 -174672701 + A-rich Low_complexity Low_complexity 1 46 0 315 296 22 7 chrX 2301570 2301705 -174672435 - L1M4 LINE L1 -2910 3236 3100 2285 107 0 16 chrX 2302302 2302619 -174671521 + AluSx SINE Alu 1 312 0 2242 112 3 3 chrX 2302620 2302923 -174671217 + AluSx SINE Alu 2 304 -8 263 71 0 0 chrX 2302949 2302991 -174671149 + Alu SINE Alu 258 299 -1 2083 109 6 64 chrX 2303065 2303395 -174670745 + AluSx SINE Alu 1 311 -1 200 100 25 0 chrX 2303408 2303448 -174670692 + (CAA)n Simple_repeat Simple_repeat 2 42 0 784 149 0 71 chrX 2303471 2303612 -174670528 + FLAM_C SINE Alu 3 133 0 1700 179 3 19 chrX 2304105 2304413 -174669727 + AluJo SINE Alu 1 303 -9 1700 187 0 39 chrX 2304572 2304882 -174669258 - AluJb SINE Alu -12 300 3 2003 131 7 0 chrX 2304896 2305218 -174668922 - AluSx SINE Alu 0 324 1 1924 162 17 8 chrX 2305299 2305650 -174668490 + MER47A DNA MER2_type 13 366 0 1897 125 39 0 chrX 2305650 2305961 -174668179 - MLT1A1 LTR MaLR -32 333 11 1984 124 7 0 chrX 2306280 2306555 -174667585 + AluJo SINE Alu 36 312 0 204 363 26 18 chrX 2306746 2306859 -174667281 + L2 LINE L2 2181 2294 -1020 1257 244 64 33 chrX 2306931 2307353 -174666787 - MLT1C LTR MaLR -27 440 6 663 176 60 166 chrX 2307368 2307519 -174666621 - MLT1C LTR MaLR -122 345 180 2177 91 3 30 chrX 2307519 2307847 -174666293 - AluSq SINE Alu 0 313 5 663 176 60 166 chrX 2307847 2307986 -174666154 - MLT1C LTR MaLR -287 180 102 2636 51 0 10 chrX 2307986 2308300 -174665840 - AluY SINE Alu 0 311 1 663 176 60 166 chrX 2308300 2308388 -174665752 - MLT1C LTR MaLR -365 102 6 2564 67 0 0 chrX 2309129 2309428 -174664712 + AluY SINE Alu 1 299 -12 539 219 8 8 chrX 2309429 2309557 -174664583 - MER3 DNA MER1_type -80 129 2 745 238 52 9 chrX 2309567 2309777 -174664363 + MER20 DNA MER1_type 1 219 0 303 191 0 0 chrX 2309795 2309863 -174664277 + CT-rich Low_complexity Low_complexity 1 68 0 307 191 26 17 chrX 2309886 2310001 -174664139 + (TCTA)n Simple_repeat Simple_repeat 3 118 0 237 149 0 21 chrX 2310057 2310104 -174664036 + (TCCA)n Simple_repeat Simple_repeat 3 48 0 308 131 0 16 chrX 2310104 2310165 -174663975 + (TCTA)n Simple_repeat Simple_repeat 2 61 0 737 231 42 46 chrX 2310169 2310385 -174663755 + MER20 DNA MER1_type 1 215 -4 537 237 63 90 chrX 2310556 2310959 -174663181 + LTR15 LTR ERV1 112 596 0 1841 168 7 0 chrX 2311201 2311505 -174662635 - AluJb SINE Alu -6 306 1 347 220 0 20 chrX 2311845 2311945 -174662195 - L1MB7 LINE L1 0 6184 6087 2466 82 0 0 chrX 2311955 2312260 -174661880 - AluY SINE Alu -6 305 1 1640 177 21 7 chrX 2312270 2312553 -174661587 - AluJo SINE Alu -24 288 2 1781 146 13 48 chrX 2313066 2313375 -174660765 - AluJo SINE Alu -14 298 1 2303 104 0 0 chrX 2313495 2313792 -174660348 - AluSx SINE Alu -15 297 1 1530 141 0 4 chrX 2313795 2314022 -174660118 - AluSg/x SINE Alu -2 310 85 1473 149 86 4 chrX 2314658 2314926 -174659214 + AluJo SINE Alu 3 292 -20 685 143 0 61 chrX 2314946 2315093 -174659047 + L1MB3 LINE L1 6045 6182 -1 2326 86 3 10 chrX 2315105 2315406 -174658734 + AluSx SINE Alu 7 305 -7 813 182 8 0 chrX 2315420 2315552 -174658588 + FLAM_C SINE Alu 1 133 0 1900 154 0 7 chrX 2315891 2316190 -174657950 - AluJb SINE Alu -13 299 3 284 253 12 12 chrX 2316267 2316350 -174657790 - L1ME1 LINE L1 -22 6144 6062 264 246 254 7 chrX 2316402 2316540 -174657600 - MIR SINE MIR -12 250 79 501 187 23 12 chrX 2316594 2316765 -174657375 + GA-rich Low_complexity Low_complexity 4 176 0 2253 127 0 6 chrX 2316839 2317153 -174656987 + AluSx SINE Alu 1 312 0 1087 168 24 0 chrX 2317156 2317365 -174656775 + MLT1B LTR MaLR 172 385 -5 2452 90 0 3 chrX 2317674 2317985 -174656155 - AluSg SINE Alu 0 310 1 1868 156 10 16 chrX 2318087 2318401 -174655739 - AluJo SINE Alu 0 312 1 1333 224 68 30 chrX 2318761 2319189 -174654951 - MLT1C LTR MaLR -23 444 1 365 218 223 0 chrX 2319199 2319392 -174654748 - MLT1C LTR MaLR -122 345 110 301 120 0 120 chrX 2319404 2319479 -174654661 - FLAM SINE Alu 0 133 68 258 180 60 0 chrX 2319461 2319511 -174654629 - Alu SINE Alu -247 53 1 * 388 250 10 0 chrX 2319524 2319628 -174654512 - MLT1C LTR MaLR -359 108 4 23 0 0 0 chrX 2320275 2320298 -174653842 + AT_rich Low_complexity Low_complexity 1 23 0 1741 156 21 10 chrX 2320298 2320586 -174653554 - AluSx SINE Alu -21 291 1 1356 175 116 19 chrX 2320588 2320856 -174653284 - AluJb SINE Alu -18 294 1 185 0 40 0 chrX 2320856 2320881 -174653259 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1528 151 7 69 chrX 2320881 2321185 -174652955 - AluJo SINE Alu -27 285 1 2228 97 0 0 chrX 2321512 2321791 -174652349 + AluSx SINE Alu 1 279 -33 306 0 0 0 chrX 2321791 2321825 -174652315 + (CAA)n Simple_repeat Simple_repeat 2 35 0 703 290 74 7 chrX 2322208 2322491 -174651649 - MER46C DNA MER2_type -32 306 5 1922 187 11 6 chrX 2322540 2322899 -174651241 + L1PA16 LINE L1 5806 6166 0 289 275 0 14 chrX 2323045 2323114 -174651026 - MLT1J LTR MaLR -328 183 116 1067 149 17 6 chrX 2324457 2324638 -174649502 + AluJb SINE Alu 129 311 -1 2191 184 13 33 chrX 2324714 2324902 -174649238 - L1MA9 LINE L1 -191 6121 5931 2513 114 3 14 chrX 2324902 2325270 -174648870 - THE1B LTR MaLR 0 364 1 2191 184 13 33 chrX 2325270 2325533 -174648607 - L1MA9 LINE L1 -381 5931 5679 513 126 0 2 chrX 2325919 2326126 -174648014 + AluJo SINE Alu 9 250 -62 329 129 0 16 chrX 2326220 2326282 -174647858 + (GGA)n Simple_repeat Simple_repeat 3 63 0 470 244 6 0 chrX 2326365 2326521 -174647619 + GA-rich Low_complexity Low_complexity 1 157 0 246 105 0 0 chrX 2326942 2326980 -174647160 + (TC)n Simple_repeat Simple_repeat 2 39 0 2078 154 38 3 chrX 2327873 2328217 -174645923 - MLT1A1 LTR MaLR -5 360 5 186 133 0 0 chrX 2328918 2328948 -174645192 + (TTCC)n Simple_repeat Simple_repeat 4 33 0 1299 180 120 11 chrX 2328951 2329218 -174644922 - AluJo SINE Alu -4 298 3 263 191 0 21 chrX 2329264 2329311 -174644829 + MLT1C LTR MaLR 422 467 0 23 54 0 0 chrX 2329713 2329750 -174644390 + AT_rich Low_complexity Low_complexity 1 37 0 893 172 6 0 chrX 2329758 2329921 -174644219 - AluJb SINE Alu -26 286 123 22 56 0 0 chrX 2329921 2329957 -174644183 + AT_rich Low_complexity Low_complexity 1 36 0 1284 201 123 4 chrX 2329982 2330250 -174643890 - AluJo SINE Alu -2 300 1 913 124 0 0 chrX 2330561 2330690 -174643450 + FLAM_C SINE Alu 1 129 -4 1456 132 4 0 chrX 2330704 2330931 -174643209 + AluSg/x SINE Alu 83 310 0 1790 150 3 0 chrX 2331115 2331401 -174642739 + AluJb SINE Alu 5 291 -21 583 266 31 36 chrX 2331878 2332070 -174642070 - MER20 DNA MER1_type -28 191 1 393 216 47 18 chrX 2332071 2332242 -174641898 + (TAGA)n Simple_repeat Simple_repeat 3 178 0 840 204 31 62 chrX 2332352 2332577 -174641563 - MER20 DNA MER1_type -1 218 1 450 0 0 0 chrX 2332589 2332639 -174641501 + (TGGA)n Simple_repeat Simple_repeat 3 52 0 401 131 77 36 chrX 2332680 2332848 -174641292 + (TAGA)n Simple_repeat Simple_repeat 2 176 0 925 224 28 9 chrX 2332858 2333072 -174641068 - MER20 DNA MER1_type -1 218 1 21 0 0 0 chrX 2333548 2333569 -174640571 + AT_rich Low_complexity Low_complexity 1 21 0 26 50 0 0 chrX 2333760 2333800 -174640340 + AT_rich Low_complexity Low_complexity 1 40 0 186 43 0 0 chrX 2334682 2334705 -174639435 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 24 0 0 0 chrX 2334959 2334983 -174639157 + AT_rich Low_complexity Low_complexity 1 24 0 1718 166 0 19 chrX 2335023 2335330 -174638810 - AluJo SINE Alu -9 303 3 707 207 0 0 chrX 2335331 2335466 -174638674 - AluJo SINE Alu -176 136 2 2375 69 0 7 chrX 2335500 2335803 -174638337 + AluY SINE Alu 1 301 -10 939 134 0 0 chrX 2335814 2335956 -174638184 + AluSg/x SINE Alu 168 309 -1 2025 175 25 55 chrX 2335962 2336437 -174637703 - L1MB3 LINE L1 -63 6120 5660 1280 170 4 0 chrX 2336460 2336689 -174637451 - AluSg/x SINE Alu -10 302 73 411 218 0 0 chrX 2336761 2336862 -174637278 + (CA)n Simple_repeat Simple_repeat 1 101 0 1855 191 12 29 chrX 2336983 2337397 -174636743 - L1PB4 LINE L1 -1 6155 5749 244 191 29 29 chrX 2337404 2337420 -174636720 + L1P5 LINE L1 5476 5491 -663 1631 183 0 13 chrX 2337420 2337732 -174636408 + AluJo SINE Alu 3 310 -2 244 191 29 29 chrX 2337732 2337783 -174636357 + L1P5 LINE L1 5490 5543 -611 191 263 88 120 chrX 2338129 2338303 -174635837 + L2 LINE L2 2347 2514 -800 1416 222 13 0 chrX 2338303 2338487 -174635653 - AluJo SINE Alu -6 306 115 387 0 0 0 chrX 2338487 2338530 -174635610 + (TG)n Simple_repeat Simple_repeat 2 44 0 1416 222 13 0 chrX 2338530 2338647 -174635493 - AluJo SINE Alu -197 115 1 191 263 88 120 chrX 2338647 2338689 -174635451 + L2 LINE L2 2514 2556 -758 755 169 0 0 chrX 2338817 2338935 -174635205 + AluJo/FLAM SINE Alu 2 119 -193 1466 199 31 0 chrX 2338935 2339227 -174634913 - AluJo SINE Alu -7 305 5 2412 81 0 0 chrX 2339233 2339542 -174634598 - AluY SINE Alu -2 309 1 828 141 15 0 chrX 2339542 2339677 -174634463 - AluJo SINE Alu -175 137 1 1581 167 39 0 chrX 2340346 2340628 -174633512 - AluJo SINE Alu -16 296 4 229 185 31 0 chrX 2341020 2341085 -174633055 + CT-rich Low_complexity Low_complexity 4 70 0 1313 86 11 5 chrX 2342055 2342242 -174631898 + AluSg/x SINE Alu 125 312 0 1514 171 51 14 chrX 2342680 2342973 -174631167 - AluJo SINE Alu -8 304 1 1642 176 3 17 chrX 2343368 2343663 -174630477 + AluJb SINE Alu 1 291 -21 2228 90 7 0 chrX 2343665 2343965 -174630175 + AluSq SINE Alu 1 302 -11 1672 183 13 6 chrX 2344379 2344696 -174629444 - MLT1B LTR MaLR 0 390 72 1280 229 42 11 chrX 2344832 2345186 -174628954 + MLT1A1 LTR MaLR 1 365 0 1764 173 0 22 chrX 2347175 2347493 -174626647 + AluJb SINE Alu 2 312 0 245 96 62 48 chrX 2347571 2347717 -174626423 + (TA)n Simple_repeat Simple_repeat 1 148 0 527 41 67 58 chrX 2347743 2348346 -174625794 + (TA)n Simple_repeat Simple_repeat 1 608 0 341 211 105 0 chrX 2348411 2348506 -174625634 - MLT2B1 LTR ERVL -415 105 1 1962 159 17 11 chrX 2348510 2348869 -174625271 - MLT1A1 LTR MaLR -1 364 4 1935 191 16 0 chrX 2348918 2349284 -174624856 - MLT1B LTR MaLR -18 372 1 1302 96 0 0 chrX 2349344 2349521 -174624619 - AluSg/x SINE Alu -2 308 132 2351 77 0 0 chrX 2349522 2349819 -174624321 - AluY SINE Alu -14 297 1 679 140 0 0 chrX 2349819 2349926 -174624214 - L1PB1 LINE L1 -117 6034 5928 323 224 19 28 chrX 2349929 2350036 -174624104 - Charlie5 DNA MER1_type -273 2339 2234 276 237 30 59 chrX 2350022 2350157 -174623983 - Charlie5 DNA MER1_type -2476 136 6 * 2053 139 0 0 chrX 2351049 2351359 -174622781 - AluJb SINE Alu -2 310 1 2536 42 3 0 chrX 2351406 2351716 -174622424 - AluY SINE Alu 0 311 1 1776 173 3 6 chrX 2351786 2352098 -174622042 - AluJo SINE Alu -1 311 1 485 131 12 0 chrX 2352099 2352183 -174621957 + CT-rich Low_complexity Low_complexity 1 85 0 1001 127 0 6 chrX 2352184 2352365 -174621775 + (TCCCC)n Simple_repeat Simple_repeat 1 180 0 1316 146 13 34 chrX 2352680 2352913 -174621227 - MER46A DNA MER2_type -7 229 2 781 191 0 0 chrX 2353016 2353157 -174620983 - FLAM_C SINE Alu 0 143 3 468 0 0 0 chrX 2353297 2353349 -174620791 + (CA)n Simple_repeat Simple_repeat 1 52 0 258 309 49 16 chrX 2353351 2353474 -174620666 - L1MC5 LINE L1 -69 7892 7766 326 143 0 100 chrX 2353567 2353637 -174620503 + AluJo SINE Alu 85 147 -155 * 804 222 125 0 chrX 2353636 2353812 -174620328 + MER58A DNA MER1_type 27 224 0 1642 235 5 3 chrX 2353865 2354257 -174619883 + L1MB3 LINE L1 5790 6182 -1 294 243 35 18 chrX 2354259 2354428 -174619712 + (TA)n Simple_repeat Simple_repeat 2 173 0 80 70 0 0 chrX 2354465 2354622 -174619518 + AT_rich Low_complexity Low_complexity 1 157 0 226 296 23 6 chrX 2354681 2354857 -174619283 + (TA)n Simple_repeat Simple_repeat 2 180 0 2068 120 7 3 chrX 2355635 2355943 -174618197 - AluSg SINE Alu -1 309 1 702 151 36 130 chrX 2355953 2356009 -174618131 - L1MB5 LINE L1 -1 6179 6119 1591 182 0 7 chrX 2356009 2356305 -174617835 - AluJo SINE Alu -18 294 1 702 151 36 130 chrX 2356305 2356440 -174617700 - L1MB5 LINE L1 -61 6119 6006 492 198 116 16 chrX 2356440 2356561 -174617579 - MLT1C LTR MaLR -327 140 8 1593 188 3 13 chrX 2357531 2357840 -174616300 - AluJo SINE Alu -6 306 1 1295 139 60 0 chrX 2358585 2358786 -174615354 - LTR36 LTR ERV1 0 611 399 2104 112 3 22 chrX 2358925 2359239 -174614901 - AluSx SINE Alu -4 308 1 180 0 0 0 chrX 2359311 2359331 -174614809 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 1566 160 110 10 chrX 2359337 2359536 -174614604 - L1PA15 LINE L1 -21 6144 5946 414 179 193 50 chrX 2359536 2359676 -174614464 - L1MA4 LINE L1 -362 5938 5779 718 99 9 9 chrX 2360400 2360511 -174613629 + HY1 scRNA scRNA 1 111 -1 24 0 0 0 chrX 2360517 2360541 -174613599 + AT_rich Low_complexity Low_complexity 1 24 0 4244 122 18 0 chrX 2360696 2361320 -174612820 - MER41B LTR ERV1 0 635 1 256 239 15 15 chrX 2362283 2362350 -174611790 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 443 256 10 0 chrX 2362364 2362669 -174611471 + (CCCA)n Simple_repeat Simple_repeat 1 308 0 858 180 0 0 chrX 2362672 2362850 -174611290 + (TCCA)n Simple_repeat Simple_repeat 1 178 0 220 195 26 39 chrX 2362894 2363048 -174611092 + (TCTA)n Simple_repeat Simple_repeat 3 154 0 518 207 23 0 chrX 2363061 2363235 -174610905 + (TCTA)n Simple_repeat Simple_repeat 3 180 0 22 35 0 0 chrX 2363696 2363725 -174610415 + AT_rich Low_complexity Low_complexity 1 29 0 2068 98 23 10 chrX 2363894 2364201 -174609939 + AluSx SINE Alu 1 311 -1 523 235 0 13 chrX 2364822 2364975 -174609165 + CT-rich Low_complexity Low_complexity 4 154 0 341 58 0 39 chrX 2364983 2365035 -174609105 + (TTTCC)n Simple_repeat Simple_repeat 1 50 0 419 143 16 0 chrX 2365038 2365101 -174609039 - AluSp/q SINE Alu -41 272 209 2056 94 0 4 chrX 2365103 2365378 -174608762 - AluSx SINE Alu -38 274 1 1823 164 0 10 chrX 2366065 2366369 -174607771 + AluJo SINE Alu 1 301 -11 300 314 0 0 chrX 2366544 2366630 -174607510 + Charlie1 DNA MER1_type 2350 2435 -326 660 256 32 97 chrX 2366694 2366952 -174607188 - Charlie1 DNA MER1_type 0 2761 2538 1591 149 13 49 chrX 2366952 2367260 -174606880 + AluJb SINE Alu 1 297 -15 660 256 32 97 chrX 2367260 2367412 -174606728 - Charlie1 DNA MER1_type -223 2538 2378 30 21 0 21 chrX 2367666 2367695 -174606445 + AT_rich Low_complexity Low_complexity 1 30 -17 2010 126 0 0 chrX 2367695 2367988 -174606152 - AluSx SINE Alu -19 293 1 30 21 0 21 chrX 2367988 2368006 -174606134 + AT_rich Low_complexity Low_complexity 30 47 0 1756 158 13 16 chrX 2368366 2368669 -174605471 - AluJo SINE Alu -2 310 9 1890 128 3 102 chrX 2368676 2369020 -174605120 - AluJo SINE Alu -2 310 1 1298 237 93 32 chrX 2370000 2370439 -174603701 - MLT1C LTR MaLR -1 466 1 806 236 146 37 chrX 2370449 2370771 -174603369 - MLT1C LTR MaLR -122 345 5 1933 137 137 34 chrX 2371058 2371373 -174602767 + MSTA LTR MaLR 1 365 -63 2519 66 0 3 chrX 2371373 2371678 -174602462 - AluY SINE Alu -7 304 1 1933 137 137 34 chrX 2371678 2371750 -174602390 + MSTA LTR MaLR 365 428 0 1082 185 15 10 chrX 2372098 2372298 -174601842 + AluJo SINE Alu 97 297 -15 222 352 0 0 chrX 2372316 2372387 -174601753 - L2 LINE L2 -1 3271 3201 1636 156 0 59 chrX 2372402 2372709 -174601431 + AluJb SINE Alu 5 293 -19 1922 132 4 0 chrX 2372925 2373197 -174600943 - AluSx SINE Alu -39 273 1 1259 164 19 0 chrX 2373199 2373412 -174600728 - AluJb SINE Alu -9 303 87 5877 138 12 38 chrX 2373416 2374192 -174599948 - L1MA5A LINE L1 0 6297 5503 1971 138 3 10 chrX 2374192 2374488 -174599652 + AluJb SINE Alu 1 294 -18 5877 138 12 38 chrX 2374488 2374544 -174599596 - L1MA5A LINE L1 -794 5503 5447 2349 76 0 7 chrX 2374544 2374834 -174599306 - AluSq SINE Alu -3 310 23 5877 138 12 38 chrX 2374834 2375054 -174599086 - L1MA5A LINE L1 -850 5447 5271 21 36 0 0 chrX 2376051 2376079 -174598061 + AT_rich Low_complexity Low_complexity 1 28 0 2201 116 0 0 chrX 2376085 2376379 -174597761 + AluY SINE Alu 1 294 -17 1769 170 3 26 chrX 2377029 2377340 -174596800 + AluJo SINE Alu 1 304 -8 703 180 0 50 chrX 2377737 2377876 -174596264 - FLAM_C SINE Alu -1 132 1 1515 173 3 21 chrX 2378380 2378663 -174595477 - AluJo SINE Alu -14 298 21 21 0 0 0 chrX 2378715 2378736 -174595404 + AT_rich Low_complexity Low_complexity 1 21 0 324 0 0 0 chrX 2378768 2378804 -174595336 + (CA)n Simple_repeat Simple_repeat 2 37 0 21 36 0 0 chrX 2379581 2379609 -174594531 + AT_rich Low_complexity Low_complexity 1 28 0 1816 153 0 19 chrX 2379793 2380100 -174594040 - AluSx SINE Alu -11 301 1 24 0 0 0 chrX 2380833 2380857 -174593283 + AT_rich Low_complexity Low_complexity 1 24 0 623 277 5 29 chrX 2381014 2381220 -174592920 - L1MB8 LINE L1 0 6178 5978 1547 110 239 146 chrX 2381220 2381529 -174592611 - Charlie3 DNA MER1_type 0 2712 2 1262 217 7 7 chrX 2381530 2381820 -174592320 - L1MB8 LINE L1 -190 5984 5695 439 255 19 9 chrX 2381689 2381855 -174592285 - L1PA13 LINE L1 -336 5825 5662 * 1257 226 100 25 chrX 2382172 2382571 -174591569 - MLT1C LTR MaLR -17 450 22 1080 212 91 39 chrX 2382599 2382929 -174591211 - MLT1C LTR MaLR -120 347 1 1892 149 38 54 chrX 2383326 2383494 -174590646 - L1MA8 LINE L1 0 6291 6122 793 160 0 0 chrX 2383494 2383619 -174590521 - FLAM_C SINE Alu -7 126 2 1892 149 38 54 chrX 2383619 2383874 -174590266 - L1MA8 LINE L1 -169 6122 5875 430 145 14 0 chrX 2383916 2383985 -174590155 + AluSg/x SINE Alu 211 280 -32 1115 197 136 15 chrX 2384002 2384266 -174589874 - Tigger3(Golem) DNA MER2_type -2733 296 1 1872 140 10 13 chrX 2384289 2384589 -174589551 - AluJo SINE Alu -9 303 5 415 218 15 30 chrX 2384653 2384786 -174589354 + (TA)n Simple_repeat Simple_repeat 1 131 0 520 216 0 22 chrX 2384791 2384972 -174589168 + (TATG)n Simple_repeat Simple_repeat 2 178 0 242 289 25 55 chrX 2385588 2385726 -174588414 + MIR3 SINE MIR 28 162 -46 318 96 22 0 chrX 2386365 2386422 -174587718 - L1M2 LINE L1 -505 5786 5724 2045 156 0 0 chrX 2386637 2386944 -174587196 + AluJb SINE Alu 1 307 -5 313 233 14 0 chrX 2386975 2387048 -174587092 - MIR SINE MIR -119 143 70 2981 160 35 28 chrX 2387062 2387444 -174586696 - L1MA4A LINE L1 -28 6275 5883 1992 115 44 10 chrX 2387444 2387740 -174586400 - AluSx SINE Alu -6 306 1 2981 160 35 28 chrX 2387740 2387932 -174586208 - L1MA4A LINE L1 -420 5883 5694 215 304 108 20 chrX 2387961 2388063 -174586077 + MER5B DNA MER1_type 6 116 -62 2180 119 0 31 chrX 2388072 2388391 -174585749 - AluSx SINE Alu -1 311 3 563 214 42 117 chrX 2388533 2388775 -174585365 - L1MC4a LINE L1 -1759 6049 5833 2437 87 7 0 chrX 2388775 2389085 -174585055 - AluSx SINE Alu 0 312 1 563 214 42 117 chrX 2389085 2389150 -174584990 - L1MC4a LINE L1 -1975 5833 5765 1646 175 11 11 chrX 2389165 2389451 -174584689 - AluJo SINE Alu -26 286 1 28 29 0 0 chrX 2390288 2390323 -174583817 + AT_rich Low_complexity Low_complexity 1 35 0 2306 91 3 7 chrX 2391459 2391757 -174582383 - AluSx SINE Alu -15 297 1 1693 195 7 3 chrX 2392200 2392492 -174581648 + AluJb SINE Alu 1 293 -19 2277 103 3 0 chrX 2392495 2392797 -174581343 + AluSq SINE Alu 1 303 -10 438 53 0 0 chrX 2393332 2393389 -174580751 + (TG)n Simple_repeat Simple_repeat 2 58 0 1951 157 3 3 chrX 2393774 2394080 -174580060 + AluJb SINE Alu 1 306 -6 753 165 31 0 chrX 2394150 2394277 -174579863 + FLAM_C SINE Alu 2 132 -1 675 148 0 9 chrX 2394590 2394698 -174579442 + U6 snRNA snRNA 1 107 0 2346 74 17 3 chrX 2395281 2395580 -174578560 + AluSx SINE Alu 1 303 -9 183 80 0 0 chrX 2396291 2396316 -174577824 + (CAAAAA)n Simple_repeat Simple_repeat 2 26 0 432 0 0 0 chrX 2396895 2396943 -174577197 + (TG)n Simple_repeat Simple_repeat 2 49 0 707 255 51 19 chrX 2397648 2397749 -174576391 - MER58A DNA MER1_type -2197 223 127 1520 189 28 7 chrX 2397749 2398040 -174576100 + AluJo SINE Alu 6 302 -10 707 255 51 19 chrX 2398040 2398154 -174575986 - MER58A DNA MER1_type -2293 127 1 228 67 0 0 chrX 2398917 2398947 -174575193 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 1603 158 0 26 chrX 2398948 2399220 -174574920 - AluJo SINE Alu -32 280 16 310 185 61 21 chrX 2399510 2399855 -174574285 + (TA)n Simple_repeat Simple_repeat 1 358 0 29 0 0 0 chrX 2399873 2399902 -174574238 + AT_rich Low_complexity Low_complexity 1 29 0 28 0 0 0 chrX 2400087 2400115 -174574025 + AT_rich Low_complexity Low_complexity 1 28 0 2867 131 42 17 chrX 2400117 2400380 -174573760 - L1MA5A LINE L1 -6 6291 6036 2331 111 0 0 chrX 2400380 2400677 -174573463 + AluSg SINE Alu 1 297 -13 2867 131 42 17 chrX 2400677 2400939 -174573201 - L1MA5A LINE L1 -261 6036 5753 1847 170 0 19 chrX 2400943 2401254 -174572886 - AluJb SINE Alu -5 307 3 300 182 299 26 chrX 2401347 2401501 -174572639 - L1MB2 LINE L1 -7 6164 5969 180 0 0 0 chrX 2402869 2402889 -174571251 + (T)n Simple_repeat Simple_repeat 1 20 0 657 197 100 120 chrX 2403231 2403530 -174570610 - MER101 LTR ERV1 0 474 182 315 241 0 27 chrX 2403545 2403657 -174570483 - MER101 LTR ERV1 -186 288 180 256 294 16 32 chrX 2403774 2403900 -174570240 - MER101 LTR ERV1 -186 288 165 1120 199 3 77 chrX 2403909 2404196 -174569944 - MER101 LTR ERV1 -198 276 11 2749 39 0 3 chrX 2404447 2404759 -174569381 - AluY SINE Alu 0 311 1 33 25 0 0 chrX 2404845 2404885 -174569255 + AT_rich Low_complexity Low_complexity 1 40 0 865 160 0 0 chrX 2405054 2405179 -174568961 + AluJo SINE Alu 90 214 -98 289 126 32 42 chrX 2405210 2405305 -174568835 + (TAGA)n Simple_repeat Simple_repeat 3 96 0 1023 167 31 50 chrX 2405323 2405545 -174568595 - MER20 DNA MER1_type 0 219 2 495 307 100 28 chrX 2406228 2406707 -174567433 + L2 LINE L2 2729 3245 -68 378 258 44 107 chrX 2406770 2406933 -174567207 - L1MC4a LINE L1 -1958 5850 5713 2224 104 7 0 chrX 2406933 2407232 -174566908 + AluSq SINE Alu 1 301 -12 378 258 44 107 chrX 2407232 2407366 -174566774 - L1MC4a LINE L1 -2095 5713 5572 2177 115 0 0 chrX 2407367 2407653 -174566487 - AluJb SINE Alu -16 296 11 2154 137 83 21 chrX 2407664 2408051 -174566089 - L1MA7 LINE L1 -342 5949 5539 2533 70 0 0 chrX 2408178 2408477 -174565663 + AluSq SINE Alu 1 299 -14 2301 99 0 0 chrX 2408757 2409061 -174565079 - AluSq SINE Alu -9 304 1 4505 96 19 3 chrX 2409298 2409932 -174564208 + LTR9B LTR ERV1 1 644 0 198 0 0 0 chrX 2410050 2410072 -174564068 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 1735 130 0 20 chrX 2410106 2410359 -174563781 + AluJo SINE Alu 4 251 -61 2121 89 36 30 chrX 2410359 2410656 -174563484 - LTR7 LTR ERV1 0 450 104 2583 58 0 6 chrX 2410656 2410969 -174563171 - AluY SINE Alu 0 311 1 2121 89 36 30 chrX 2410969 2411038 -174563102 - LTR7 LTR ERV1 -346 104 37 272 109 0 0 chrX 2411026 2411072 -174563068 + AluJo SINE Alu 257 302 0 * 452 183 113 35 chrX 2411087 2411202 -174562938 + MER63 DNA MER1_type 2 751 -85 2283 92 3 52 chrX 2411232 2411557 -174562583 - AluSq SINE Alu -4 309 1 2225 170 18 8 chrX 2412052 2412451 -174561689 + MER57A LTR ERV1 1 403 0 1654 149 51 14 chrX 2412659 2412934 -174561206 - AluJo SINE Alu -17 295 11 1991 131 24 0 chrX 2412953 2413243 -174560897 - AluSx SINE Alu -15 297 1 2423 81 7 0 chrX 2413308 2413606 -174560534 - AluY SINE Alu -11 300 1 2180 120 0 19 chrX 2413893 2414218 -174559922 - LTR8 LTR ERV1 -372 319 1 1914 140 3 29 chrX 2414942 2415250 -174558890 - AluJo SINE Alu -11 301 2 636 168 0 0 chrX 2415578 2415685 -174558455 - MER53 DNA DNA 0 189 83 933 194 6 0 chrX 2417126 2417286 -174556854 - Charlie3 DNA MER1_type -2546 164 4 539 157 0 0 chrX 2417671 2417760 -174556380 - MER4B LTR ERV1 -163 447 359 25 0 0 0 chrX 2417767 2417792 -174556348 + AT_rich Low_complexity Low_complexity 1 25 0 397 233 3 30 chrX 2417792 2418103 -174556037 + CT-rich Low_complexity Low_complexity 1 302 0 2056 131 10 0 chrX 2418648 2418946 -174555194 - AluJb SINE Alu -7 305 5 694 202 131 0 chrX 2419630 2419798 -174554342 - MER20 DNA MER1_type 0 219 30 2354 130 25 5 chrX 2420608 2420976 -174553164 - THE1C LTR MaLR 0 375 1 2066 158 0 0 chrX 2422171 2422542 -174551598 - AluSx SINE Alu 0 371 1 1750 197 16 35 chrX 2422674 2423044 -174551096 - MLT1A1 LTR MaLR -2 363 1 31 26 0 0 chrX 2423252 2423290 -174550850 + AT_rich Low_complexity Low_complexity 1 38 0 2333 102 0 0 chrX 2423457 2423752 -174550388 - AluSx SINE Alu -17 295 1 1790 164 0 32 chrX 2425329 2425639 -174548501 + AluJo SINE Alu 1 300 -12 1270 164 19 5 chrX 2426377 2426590 -174547550 + AluJb SINE Alu 73 288 -24 259 224 34 34 chrX 2426590 2426769 -174547371 + (TA)n Simple_repeat Simple_repeat 2 180 0 26 30 0 0 chrX 2426775 2426808 -174547332 + AT_rich Low_complexity Low_complexity 1 33 0 253 230 13 0 chrX 2426808 2426960 -174547180 + (TA)n Simple_repeat Simple_repeat 1 154 0 417 100 86 14 chrX 2428039 2428109 -174546031 + MLT2B1 LTR ERVL 354 428 -92 767 180 33 27 chrX 2428109 2428259 -174545881 - AluJb SINE Alu -49 263 113 269 255 118 0 chrX 2428295 2428397 -174545743 + L2 LINE L2 3197 3310 -3 355 254 45 0 chrX 2428681 2428791 -174545349 - MLT1H1 LTR MaLR -12 543 429 * 438 288 8 0 chrX 2428781 2428906 -174545234 + MER20 DNA MER1_type 90 215 -4 656 125 19 10 chrX 2428995 2429099 -174545041 - U6 snRNA snRNA -2 105 1 232 320 0 48 chrX 2429187 2429312 -174544828 - MLT1H-int LTR MaLR -1616 119 1 393 287 65 51 chrX 2429315 2429532 -174544608 - MLT1H LTR MaLR -3 548 333 610 224 59 51 chrX 2429568 2429871 -174544269 + MLT1H1 LTR MaLR 243 547 -2 1495 166 121 10 chrX 2430167 2430480 -174543660 - MER7A DNA MER2_type 0 346 1 4426 121 11 2 chrX 2430517 2431145 -174542995 - MER41B LTR ERV1 0 635 2 1193 123 0 3 chrX 2431580 2431941 -174542199 + (TA)n Simple_repeat Simple_repeat 1 359 0 193 286 79 0 chrX 2432772 2432835 -174541305 - L2 LINE L2 0 3313 3246 395 143 30 48 chrX 2433299 2433467 -174540673 + (TAGA)n Simple_repeat Simple_repeat 2 166 0 454 171 22 39 chrX 2433517 2433698 -174540442 + (TAGA)n Simple_repeat Simple_repeat 3 180 0 1597 134 28 0 chrX 2433873 2434120 -174540020 + L1MA7 LINE L1 5682 5935 -356 688 261 28 6 chrX 2434140 2434320 -174539820 - MER20 DNA MER1_type -6 213 30 807 174 0 0 chrX 2434462 2434594 -174539546 + AluJb SINE Alu 1 132 -180 1741 166 28 3 chrX 2434601 2434885 -174539255 + AluJb SINE Alu 6 296 -16 4274 110 23 2 chrX 2435035 2435655 -174538485 + MER41B LTR ERV1 1 633 -2 1960 157 0 7 chrX 2436064 2436369 -174537771 - AluJo SINE Alu -9 303 1 1969 187 7 12 chrX 2436381 2436787 -174537353 - L1MA3 LINE L1 0 6305 5902 1816 137 41 47 chrX 2436811 2437026 -174537114 - L1PB3 LINE L1 0 6154 5940 1804 163 0 7 chrX 2437026 2437315 -174536825 - AluJb SINE Alu -21 291 5 1816 137 41 47 chrX 2437315 2437442 -174536698 - L1PB3 LINE L1 -214 5940 5814 753 240 73 5 chrX 2437448 2437652 -174536488 + MER20 DNA MER1_type 1 218 -1 913 111 0 0 chrX 2437658 2437775 -174536365 + AluSp SINE Alu 1 117 -196 267 31 0 0 chrX 2438034 2438066 -174536074 + (TTTTTG)n Simple_repeat Simple_repeat 4 35 0 2882 57 5 94 chrX 2438655 2438888 -174535252 - L1PA10 LINE L1 -294 5874 5696 1840 81 76 0 chrX 2438888 2439124 -174535016 - AluSq SINE Alu -59 254 1 2882 57 5 94 chrX 2439124 2439326 -174534814 - L1PA10 LINE L1 -472 5696 5478 1252 71 130 0 chrX 2439326 2439510 -174534630 + L1PA10 LINE L1 5959 6166 -2 1677 209 30 5 chrX 2439734 2440107 -174534033 + L1MB5 LINE L1 5792 6173 -1 2059 133 3 0 chrX 2440118 2440465 -174533675 + AluSx SINE Alu 1 312 0 1623 138 7 67 chrX 2440696 2440993 -174533147 + AluSx SINE Alu 5 283 -29 350 130 0 0 chrX 2441188 2441242 -174532898 - MADE1 DNA Mariner -1 79 26 218 226 0 16 chrX 2441264 2441326 -174532814 + (TA)n Simple_repeat Simple_repeat 2 62 0 34 0 0 0 chrX 2441327 2441361 -174532779 + AT_rich Low_complexity Low_complexity 1 34 0 320 140 20 0 chrX 2441459 2441509 -174532631 - MER20 DNA MER1_type -1 218 168 1025 227 31 14 chrX 2441527 2441781 -174532359 - MLT2D LTR ERVL -39 481 128 2724 88 58 21 chrX 2441794 2442226 -174531914 + LTR7 LTR ERV1 1 448 -2 4608 114 68 39 chrX 2442228 2443227 -174530913 + HERVH LTR ERV1 1 903 -6810 5328 14 2 0 chrX 2443254 2443848 -174530292 - L1PA2 LINE L1 -5 6150 5556 3454 12 5 0 chrX 2443849 2444409 -174529731 + L1PA2 LINE L1 4987 5550 -605 14831 90 11 8 chrX 2444409 2446492 -174527648 + HERVH LTR ERV1 899 2987 -4726 931 128 20 0 chrX 2446486 2446634 -174527506 + HERVH LTR ERV1 3140 3290 -4423 * 3472 111 0 6 chrX 2446624 2447129 -174527011 + HERVH LTR ERV1 3492 3993 -3720 4332 137 11 3 chrX 2447131 2447788 -174526352 + HERVH LTR ERV1 4488 5149 -2564 1420 110 23 14 chrX 2447789 2448007 -174526133 + HERVH LTR ERV1 5600 5819 -1894 * 2746 64 45 0 chrX 2448005 2448380 -174525760 + HERVH LTR ERV1 7322 7713 0 2626 99 58 21 chrX 2448380 2448812 -174525328 + LTR7 LTR ERV1 1 448 -2 321 213 8 134 chrX 2448815 2448942 -174525198 - MLT2D LTR ERVL -302 112 2 236 88 0 0 chrX 2448943 2448977 -174525163 - MLT2B2 LTR ERVL -481 34 1 228 136 0 23 chrX 2448977 2449011 -174525129 - MLT2C2 LTR ERVL -431 33 1 996 187 31 58 chrX 2449065 2449290 -174524850 + MER20 DNA MER1_type 1 219 0 24 77 0 0 chrX 2449383 2449435 -174524705 + AT_rich Low_complexity Low_complexity 1 52 0 705 161 15 8 chrX 2449517 2449647 -174524493 - MLT1A1 LTR MaLR -234 131 1 328 229 0 0 chrX 2449694 2449764 -174524376 + MER69 DNA AcHobo 2456 2525 -1 26 0 0 0 chrX 2449972 2449998 -174524142 + AT_rich Low_complexity Low_complexity 1 26 0 367 118 0 0 chrX 2450006 2450057 -174524083 - AluSx SINE Alu -7 295 245 23 0 0 0 chrX 2450057 2450080 -174524060 + AT_rich Low_complexity Low_complexity 1 23 0 1653 197 3 3 chrX 2450086 2450381 -174523759 - AluJo SINE Alu -17 295 1 430 197 0 0 chrX 2450821 2450892 -174523248 - MER81 DNA DNA -21 93 23 2657 165 0 52 chrX 2450974 2451080 -174523060 - MER66A LTR ERV1 0 478 368 1893 99 4 0 chrX 2451080 2451322 -174522818 - AluSx SINE Alu -59 253 11 2657 165 0 52 chrX 2451322 2451719 -174522421 - MER66A LTR ERV1 -110 368 1 683 214 35 23 chrX 2452042 2452215 -174521925 - MER20 DNA MER1_type -26 193 19 258 32 0 0 chrX 2452572 2452603 -174521537 + (GA)n Simple_repeat Simple_repeat 1 31 0 2214 102 7 0 chrX 2453683 2453976 -174520164 - AluSx SINE Alu -17 295 1 907 131 0 65 chrX 2454143 2454296 -174519844 - FLAM_C SINE Alu 0 143 1 913 112 176 70 chrX 2454676 2454863 -174519277 + AluJo SINE Alu 85 291 -21 1008 112 0 17 chrX 2454952 2455131 -174519009 + (TTCC)n Simple_repeat Simple_repeat 3 178 0 180 111 0 0 chrX 2456064 2456091 -174518049 + (GGAA)n Simple_repeat Simple_repeat 2 28 0 1793 167 0 17 chrX 2456549 2456843 -174517297 - AluJo SINE Alu -11 301 13 2080 134 0 10 chrX 2456857 2457170 -174516970 - AluJb SINE Alu -2 310 1 915 172 7 0 chrX 2457174 2457325 -174516815 - MLT1A1 LTR MaLR -213 152 1 1741 157 0 38 chrX 2457942 2458102 -174516038 - AluJo SINE Alu -24 288 123 225 0 0 0 chrX 2458102 2458127 -174516013 + (TA)n Simple_repeat Simple_repeat 1 25 0 * 243 0 0 0 chrX 2458126 2458153 -174515987 + (GA)n Simple_repeat Simple_repeat 2 28 0 1741 157 0 38 chrX 2458127 2458153 -174515987 - AluJo SINE Alu -189 123 98 2252 90 0 0 chrX 2458153 2458430 -174515710 - AluY SINE Alu -34 277 1 1741 157 0 38 chrX 2458430 2458555 -174515585 - AluJo SINE Alu -214 98 13 2778 83 14 3 chrX 2459295 2459655 -174514485 + THE1B LTR MaLR 1 364 0 260 269 215 0 chrX 2659944 2660074 -174314066 + MLT2B1 LTR ERVL 5 162 -358 456 222 0 0 chrX 2660084 2660174 -174313966 - L1M2 LINE L1 -724 5588 5499 183 129 0 0 chrX 2660232 2660263 -174313877 + (TG)n Simple_repeat Simple_repeat 2 32 0 231 152 0 0 chrX 2660326 2660372 -174313768 + (TATG)n Simple_repeat Simple_repeat 3 48 0 1777 175 0 20 chrX 2660373 2660670 -174313470 - AluJo SINE Alu -21 291 1 408 190 131 73 chrX 2660677 2660803 -174313337 - MLT1D LTR MaLR -329 176 43 2015 148 38 40 chrX 2660803 2661295 -174312845 + LTR1B LTR ERV1 1 525 -301 992 338 113 21 chrX 2661406 2662087 -174312053 + L2 LINE L2 855 1598 -1716 1128 167 57 33 chrX 2662179 2662245 -174311895 + MLT1A1 LTR MaLR 1 64 -301 2114 158 25 0 chrX 2662245 2662599 -174311541 - THE1B LTR MaLR 0 364 2 1128 167 57 33 chrX 2662599 2662777 -174311363 + MLT1A1 LTR MaLR 64 251 -114 288 146 0 73 chrX 2662881 2663004 -174311136 + (TATATG)n Simple_repeat Simple_repeat 5 118 0 301 184 0 126 chrX 2663010 2663113 -174311027 - L1MC4 LINE L1 -1339 6703 6614 * 317 270 11 11 chrX 2663025 2663114 -174311026 + L1MC4 LINE L1 6614 6702 -1340 1524 200 21 14 chrX 2663146 2663514 -174310626 - MER47B DNA MER2_type 0 418 1 312 200 13 27 chrX 2663542 2663648 -174310492 + (TA)n Simple_repeat Simple_repeat 1 106 -42 1832 127 66 33 chrX 2663648 2664011 -174310129 + THE1C LTR MaLR 1 375 0 312 200 13 27 chrX 2664011 2664054 -174310086 + (TA)n Simple_repeat Simple_repeat 106 148 0 1519 183 23 17 chrX 2664103 2664404 -174309736 - AluJb SINE Alu -9 303 1 333 254 15 15 chrX 2664432 2664566 -174309574 + (TA)n Simple_repeat Simple_repeat 2 135 0 614 322 152 39 chrX 2664827 2665340 -174308800 + L2 LINE L2 1720 2290 -1024 2404 142 22 52 chrX 2665349 2665793 -174308347 + Tigger2a DNA MER2_type 1 431 -3 301 265 147 5 chrX 2665869 2666080 -174308060 - L1M4 LINE L1 -3194 2952 2712 1896 138 3 22 chrX 2666084 2666433 -174307707 - MER4A LTR ERV1 -3 661 261 572 134 21 10 chrX 2666433 2666530 -174307610 - MER4A LTR ERV1 -566 98 1 311 265 56 47 chrX 2666530 2666745 -174307395 - L1M4 LINE L1 -3432 2714 2498 341 123 18 0 chrX 2667747 2667804 -174306336 + Tigger3(Golem) DNA MER2_type 2916 2973 -56 364 138 0 0 chrX 2667921 2667979 -174306161 + Tigger3(Golem) DNA MER2_type 2917 2974 -55 24 0 0 0 chrX 2668003 2668027 -174306113 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chrX 2668538 2668560 -174305580 + AT_rich Low_complexity Low_complexity 1 22 0 2057 113 23 13 chrX 2668747 2669056 -174305084 + AluSq SINE Alu 1 312 -1 223 170 55 24 chrX 2670029 2670197 -174303943 + (TAGA)n Simple_repeat Simple_repeat 1 173 0 248 217 63 21 chrX 2670249 2670392 -174303748 + (TAGA)n Simple_repeat Simple_repeat 4 152 0 301 194 51 40 chrX 2670427 2670602 -174303538 + (TAGA)n Simple_repeat Simple_repeat 4 180 0 369 202 0 0 chrX 2670814 2670888 -174303252 - MLT1D LTR MaLR -327 178 111 508 277 31 6 chrX 2670982 2671141 -174302999 - MIR SINE MIR 0 262 100 739 218 7 0 chrX 2671931 2672165 -174301975 - AluJb SINE Alu 0 374 140 2206 129 0 0 chrX 2672170 2672472 -174301668 - AluSx SINE Alu -9 303 2 2376 107 0 0 chrX 2672478 2672787 -174301353 - AluSq SINE Alu -4 309 1 1844 159 10 0 chrX 2673286 2673576 -174300564 - AluJo SINE Alu -19 293 1 1923 164 31 82 chrX 2673730 2674181 -174299959 - MSTC LTR MaLR 0 428 1 1510 175 133 6 chrX 2674329 2674660 -174299480 + MSTA LTR MaLR 1 373 -55 262 312 168 70 chrX 2674788 2675406 -174298734 - L2 LINE L2 -2634 680 2 979 261 17 17 chrX 2676564 2676909 -174297231 + L1MA9 LINE L1 5943 6287 -25 183 222 0 0 chrX 2676931 2676976 -174297164 + (TA)n Simple_repeat Simple_repeat 1 45 0 2389 83 0 3 chrX 2677957 2678257 -174295883 - AluSq SINE Alu -14 299 1 1657 161 7 4 chrX 2679078 2679358 -174294782 - AluJo SINE Alu -10 302 22 488 181 14 21 chrX 2679492 2679636 -174294504 + CT-rich Low_complexity Low_complexity 3 145 0 1499 215 13 0 chrX 2679839 2680353 -174293787 - AluJb SINE Alu 0 518 1 185 50 0 75 chrX 2680353 2680365 -174293775 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 22 0 0 0 chrX 2680661 2680683 -174293457 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chrX 2680961 2680985 -174293155 + AT_rich Low_complexity Low_complexity 1 24 0 1073 262 115 49 chrX 2681709 2682136 -174292004 - LTR40a LTR ERVL 0 519 65 1847 168 0 7 chrX 2682183 2682505 -174291635 - AluJb SINE Alu 0 312 1 194 255 108 39 chrX 2683238 2683340 -174290800 + MIR SINE MIR 54 162 -100 673 216 211 15 chrX 2683360 2683559 -174290581 + MLT1A1 LTR MaLR 1 238 -127 1078 115 0 0 chrX 2683666 2683822 -174290318 + AluSp/q SINE Alu 156 311 -2 349 186 70 39 chrX 2683844 2684000 -174290140 + Charlie1 DNA MER1_type 2572 2732 -29 326 153 36 29 chrX 2684022 2684159 -174289981 + (TCTA)n Simple_repeat Simple_repeat 1 138 0 2318 88 3 0 chrX 2684228 2684525 -174289615 - AluSx SINE Alu -14 298 1 411 284 100 50 chrX 2684558 2684797 -174289343 + MIR SINE MIR 5 255 -7 654 204 6 16 chrX 2685069 2685583 -174288557 + GA-rich Low_complexity Low_complexity 1 508 0 212 240 42 21 chrX 2686866 2686962 -174287178 + (CATATA)n Simple_repeat Simple_repeat 2 99 0 28 0 0 0 chrX 2687351 2687379 -174286761 + AT_rich Low_complexity Low_complexity 1 28 0 596 124 21 10 chrX 2687866 2687963 -174286177 + MER4A LTR ERV1 1 98 -566 1524 164 184 40 chrX 2687963 2688316 -174285824 + MER4A LTR ERV1 261 664 0 203 171 0 0 chrX 2688324 2688365 -174285775 + GA-rich Low_complexity Low_complexity 1 41 0 791 154 0 28 chrX 2689262 2689405 -174284735 - LTR7 LTR ERV1 -311 139 1 22 0 0 0 chrX 2689435 2689457 -174284683 + AT_rich Low_complexity Low_complexity 1 22 0 2308 114 29 24 chrX 2689530 2689908 -174284232 + Tigger2a DNA MER2_type 1 380 -54 2779 197 12 25 chrX 2689910 2690473 -174283667 + L1PA16 LINE L1 5607 6162 -4 2340 118 25 6 chrX 2690996 2691353 -174282787 + THE1B LTR MaLR 1 364 0 1159 241 25 97 chrX 2691436 2691991 -174282149 - L1ME3A LINE L1 -5 6165 5651 808 117 7 36 chrX 2692671 2692808 -174281332 + THE1C LTR MaLR 1 133 -242 910 213 28 21 chrX 2692918 2693156 -174280984 + LTR1B LTR ERV1 545 826 0 185 350 8 51 chrX 2693273 2693390 -174280750 + L2 LINE L2 2940 3051 -221 916 190 27 36 chrX 2694429 2694650 -174279490 + MER20 DNA MER1_type 1 219 0 180 0 0 0 chrX 2694663 2694683 -174279457 + (T)n Simple_repeat Simple_repeat 1 20 0 3445 172 120 33 chrX 2695225 2695985 -174278155 + LTR1B LTR ERV1 1 826 0 231 145 66 0 chrX 2696541 2696617 -174277523 + (TATAG)n Simple_repeat Simple_repeat 5 85 0 253 161 18 18 chrX 2696809 2696865 -174277275 + L1MA5A LINE L1 6034 6089 -208 1448 191 70 29 chrX 2696866 2697521 -174276619 + LTR8A LTR ERV1 1 724 -3 1107 96 71 0 chrX 2697521 2697719 -174276421 + L1MA5A LINE L1 6084 6295 -2 228 361 56 21 chrX 2697848 2697992 -174276148 - L2 LINE L2 -189 3083 2935 282 206 22 65 chrX 2698822 2699006 -174275134 + (TATAA)n Simple_repeat Simple_repeat 5 180 0 * 295 178 74 22 chrX 2698969 2699104 -174275036 + (TA)n Simple_repeat Simple_repeat 1 142 0 304 239 60 12 chrX 2699204 2699371 -174274769 + (TTATA)n Simple_repeat Simple_repeat 5 179 0 * 405 175 33 55 chrX 2699354 2699537 -174274603 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 323 86 63 46 chrX 2699610 2699784 -174274356 + (TA)n Simple_repeat Simple_repeat 2 178 0 234 326 167 60 chrX 2700875 2701391 -174272749 + L2 LINE L2 1268 1838 -1476 204 184 31 0 chrX 2702646 2702744 -174271396 + (TA)n Simple_repeat Simple_repeat 1 101 0 324 0 0 0 chrX 2702794 2702830 -174271310 + (CA)n Simple_repeat Simple_repeat 2 37 0 651 173 48 7 chrX 2702831 2702948 -174271192 + (TCTA)n Simple_repeat Simple_repeat 1 112 -496 2235 131 0 0 chrX 2702948 2703260 -174270880 - AluSx SINE Alu 0 312 1 651 173 48 7 chrX 2703260 2703416 -174270724 + (TCTA)n Simple_repeat Simple_repeat 112 608 0 581 73 85 18 chrX 2703471 2703635 -174270505 + (TCTA)n Simple_repeat Simple_repeat 3 177 0 729 102 40 23 chrX 2703655 2703832 -174270308 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 200 125 25 25 chrX 2703899 2703939 -174270201 + CT-rich Low_complexity Low_complexity 2 41 0 26 0 0 0 chrX 2705600 2705626 -174268514 + AT_rich Low_complexity Low_complexity 1 26 0 521 206 16 24 chrX 2706506 2706723 -174267417 + CT-rich Low_complexity Low_complexity 1 218 -314 1521 197 7 10 chrX 2706723 2707013 -174267127 - AluJb SINE Alu -23 289 1 521 206 16 24 chrX 2707013 2707043 -174267097 + CT-rich Low_complexity Low_complexity 218 532 0 790 75 47 31 chrX 2707768 2708024 -174266116 + (TCTA)n Simple_repeat Simple_repeat 1 260 0 21 57 0 0 chrX 2708531 2708566 -174265574 + AT_rich Low_complexity Low_complexity 1 35 0 3064 147 49 9 chrX 2708682 2709255 -174264885 - L1MA4 LINE L1 -5 6295 5700 884 140 6 13 chrX 2709457 2709614 -174264526 - L1MA4 LINE L1 -593 5710 5555 2126 140 19 22 chrX 2709621 2709986 -174264154 - THE1B LTR MaLR 0 364 1 2164 145 0 0 chrX 2710383 2710680 -174263460 + AluSx SINE Alu 1 297 -15 1979 143 0 16 chrX 2711263 2711571 -174262569 - AluSx SINE Alu -9 303 1 2349 107 0 0 chrX 2712193 2712501 -174261639 - AluSx SINE Alu -4 308 1 330 45 0 0 chrX 2713757 2713801 -174260339 + U5 snRNA snRNA 1 44 -72 501 66 0 13 chrX 2714050 2714126 -174260014 + L1PB3 LINE L1 6073 6147 -7 1291 191 46 8 chrX 2714687 2714928 -174259212 - AluJo SINE Alu -61 251 2 185 105 0 26 chrX 2715039 2715077 -174259063 + (TAGA)n Simple_repeat Simple_repeat 2 38 0 334 167 69 35 chrX 2715099 2715243 -174258897 + (TAGA)n Simple_repeat Simple_repeat 2 150 0 21 0 0 0 chrX 2715897 2715918 -174258222 + AT_rich Low_complexity Low_complexity 1 21 0 462 291 172 28 chrX 2715962 2716399 -174257741 + L1ME3 LINE L1 3901 4400 -1746 311 252 16 8 chrX 2716424 2716547 -174257593 + L1ME3 LINE L1 4534 4657 -1489 30 0 0 0 chrX 2716798 2716828 -174257312 + AT_rich Low_complexity Low_complexity 1 30 0 2132 136 0 0 chrX 2716955 2717256 -174256884 + AluSx SINE Alu 1 304 -8 324 0 0 0 chrX 2717256 2717292 -174256848 + (TA)n Simple_repeat Simple_repeat 2 37 0 369 287 27 18 chrX 2718086 2718309 -174255831 + L1ME3 LINE L1 5725 5949 -213 3103 232 33 33 chrX 2718450 2719414 -174254726 + MER45B DNA AcHobo 1 964 -76 1133 214 0 0 chrX 2719420 2719626 -174254514 - MER58A DNA MER1_type -6 218 13 337 166 63 46 chrX 2722971 2723146 -174250994 + (TA)n Simple_repeat Simple_repeat 2 179 0 247 107 67 0 chrX 2723162 2723237 -174250903 + (TA)n Simple_repeat Simple_repeat 2 81 0 545 225 12 0 chrX 2723276 2723436 -174250704 + (CATA)n Simple_repeat Simple_repeat 1 162 0 2376 223 25 14 chrX 2723895 2724460 -174249680 - MER7C DNA MER2_type 0 602 32 269 179 30 30 chrX 2724525 2724592 -174249548 - MLT1C LTR MaLR 0 467 401 1164 149 0 0 chrX 2724595 2724763 -174249377 + AluSg/x SINE Alu 137 304 -8 539 275 25 35 chrX 2724783 2724983 -174249157 - MLT1C LTR MaLR -176 291 94 1103 247 32 23 chrX 2725380 2725733 -174248407 - MER87 LTR ERV1 -9 547 174 552 125 0 0 chrX 2725759 2725839 -174248301 + AluS SINE Alu 1 80 -233 338 106 0 0 chrX 2725840 2725887 -174248253 - Alu SINE Alu -254 47 1 1821 176 0 3 chrX 2725887 2726183 -174247957 - AluJo SINE Alu -12 300 6 699 210 7 0 chrX 2726192 2726335 -174247805 - L1PB4 LINE L1 -3 6153 6010 2314 124 65 10 chrX 2726359 2726762 -174247378 - MSTA LTR MaLR 0 428 4 2198 113 0 7 chrX 2728309 2728610 -174245530 + AluSx SINE Alu 1 299 -13 1777 171 7 0 chrX 2728754 2729052 -174245088 + AluJb SINE Alu 1 300 -12 631 254 86 62 chrX 2729259 2729644 -174244496 + L1ME3A LINE L1 5714 6107 -63 2303 92 0 7 chrX 2730190 2730484 -174243656 + AluSx SINE Alu 1 292 -20 228 35 0 0 chrX 2730544 2730573 -174243567 + (CA)n Simple_repeat Simple_repeat 1 29 0 2370 75 3 3 chrX 2730933 2731228 -174242912 + AluSp SINE Alu 1 295 -18 255 355 70 25 chrX 2734097 2734297 -174239843 + L2 LINE L2 223 431 -2883 3804 141 25 45 chrX 2735977 2736760 -174237380 + L1PB4 LINE L1 5386 6153 -3 2218 102 3 0 chrX 2736845 2737156 -174236984 - AluSp SINE Alu 0 312 1 242 29 29 0 chrX 2737569 2737604 -174236536 + (TG)n Simple_repeat Simple_repeat 1 36 0 3885 229 20 28 chrX 2737608 2738414 -174235726 - L1MC3 LINE L1 -935 6850 6040 1571 177 35 41 chrX 2738414 2738759 -174235381 - MER2 DNA MER2_type 0 344 2 3885 229 20 28 chrX 2738759 2739003 -174235137 - L1MC3 LINE L1 -1745 6040 5806 1006 231 104 24 chrX 2739003 2739174 -174234966 - MLT1A1 LTR MaLR 0 365 209 180 0 0 0 chrX 2739174 2739194 -174234946 + (GA)n Simple_repeat Simple_repeat 2 21 0 1006 231 104 24 chrX 2739194 2739360 -174234780 - MLT1A1 LTR MaLR -156 209 1 3885 229 20 28 chrX 2739360 2739397 -174234743 - L1MC3 LINE L1 -1979 5806 5770 1118 199 4 17 chrX 2739861 2740097 -174234043 - MLT1D LTR MaLR -3 502 270 207 0 0 0 chrX 2740149 2740172 -174233968 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1159 228 28 53 chrX 2740179 2740464 -174233676 - AluJo SINE Alu -34 278 1 681 262 26 47 chrX 2740469 2740721 -174233419 - MLT1D LTR MaLR -295 210 18 557 214 38 13 chrX 2740780 2740939 -174233201 + L1MA9 LINE L1 6112 6274 -38 1192 225 8 19 chrX 2740953 2741215 -174232925 + AluJo SINE Alu 47 305 -7 256 339 85 28 chrX 2743163 2743340 -174230800 + MER5A DNA MER1_type 1 187 -2 186 43 0 0 chrX 2743415 2743438 -174230702 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1351 218 39 105 chrX 2744119 2744632 -174229508 - LTR8 LTR ERV1 0 691 213 602 152 0 9 chrX 2744708 2744813 -174229327 + LTR24B LTR ERV1 1 104 -472 339 226 19 19 chrX 2744858 2744964 -174229176 + L1MA10 LINE L1 6228 6333 -1 2735 180 21 16 chrX 2745017 2745583 -174228557 - LTR24B LTR ERV1 -7 569 1 2079 191 5 2 chrX 2745583 2745988 -174228152 + LTR49 LTR ERV1 30 435 -160 232 130 148 19 chrX 2745974 2746028 -174228112 + LTR48 LTR ERV1 607 667 -120 * 2654 184 39 66 chrX 2746065 2746195 -174227945 + LTR8A LTR ERV1 34 166 -561 1832 163 3 7 chrX 2746195 2746495 -174227645 - AluJb SINE Alu -9 303 5 2654 184 39 66 chrX 2746495 2747077 -174227063 + LTR8A LTR ERV1 166 727 0 462 125 12 12 chrX 2747086 2747166 -174226974 + LTR49 LTR ERV1 516 595 0 1208 210 64 42 chrX 2747244 2747432 -174226708 + MLT1A2 LTR MaLR 1 202 -172 4600 119 16 13 chrX 2747432 2748121 -174226019 + LTR8 LTR ERV1 1 691 0 1208 210 64 42 chrX 2748121 2748289 -174225851 + MLT1A2 LTR MaLR 202 365 -9 941 246 81 44 chrX 2748411 2748974 -174225166 - LTR24B LTR ERV1 -7 569 1 243 152 0 0 chrX 2749081 2749127 -174225013 + (TG)n Simple_repeat Simple_repeat 1 46 0 2000 153 44 8 chrX 2749228 2749683 -174224457 - MER61E LTR ERV1 -40 461 1 1573 185 92 3 chrX 2749886 2750221 -174223919 - MLT1A1 LTR MaLR 0 365 1 1566 206 0 3 chrX 2750704 2750986 -174223154 - AluJb SINE Alu -31 281 1 1921 134 7 7 chrX 2752403 2752693 -174221447 + AluSx SINE Alu 1 290 -22 433 236 236 78 chrX 2752726 2753261 -174220879 - MER92B LTR ERV1 -8 628 10 361 21 0 0 chrX 2753429 2753476 -174220664 - MER41B LTR ERV1 -108 527 481 2947 150 35 4 chrX 2753640 2754159 -174219981 + LTR39 LTR ERV1 1 535 -248 3615 104 11 11 chrX 2754159 2754718 -174219422 - PABL_A LTR ERV1 0 660 102 1248 134 49 45 chrX 2754826 2755072 -174219068 + THE1B LTR MaLR 118 364 0 299 313 77 15 chrX 2755148 2755343 -174218797 - ERVL LTR ERVL -1545 4219 4013 222 214 0 0 chrX 2756725 2756767 -174217373 + GA-rich Low_complexity Low_complexity 2 43 0 2226 104 14 0 chrX 2756875 2757164 -174216976 + AluSx SINE Alu 1 293 -19 201 143 0 0 chrX 2757413 2757448 -174216692 + (CAGA)n Simple_repeat Simple_repeat 3 37 0 796 176 6 6 chrX 2757448 2757624 -174216516 + GA-rich Low_complexity Low_complexity 3 178 0 770 167 21 0 chrX 2757635 2757872 -174216268 + GA-rich Low_complexity Low_complexity 1 242 0 1376 91 11 0 chrX 2759307 2759483 -174214657 + AluSx SINE Alu 2 179 -133 959 62 78 0 chrX 2759563 2759692 -174214448 + MER85 DNA T2_type 1 139 0 23 0 0 0 chrX 2759922 2759945 -174214195 + AT_rich Low_complexity Low_complexity 1 23 0 263 312 59 72 chrX 2760751 2761112 -174213028 - L2 LINE L2 0 3313 2946 2113 141 0 0 chrX 2761264 2761562 -174212578 - AluSx SINE Alu -14 298 1 29 78 0 0 chrX 2762393 2762457 -174211683 + AT_rich Low_complexity Low_complexity 1 64 0 318 132 0 0 chrX 2762781 2762834 -174211306 + (TG)n Simple_repeat Simple_repeat 2 54 0 2474 53 0 38 chrX 2763009 2763327 -174210813 + AluY SINE Alu 1 306 -5 970 126 6 55 chrX 2763870 2763894 -174210246 - L1MA2 LINE L1 -5 6299 6275 2561 105 6 3 chrX 2763894 2764255 -174209885 + THE1B LTR MaLR 3 364 0 970 126 6 55 chrX 2764255 2764412 -174209728 - L1MA2 LINE L1 -29 6275 6127 397 293 37 111 chrX 2764484 2764754 -174209386 + L2 LINE L2 969 1218 -2096 2239 149 3 0 chrX 2764819 2765187 -174208953 - L1PB4 LINE L1 -6 6150 5782 1026 92 17 11 chrX 2765202 2765376 -174208764 + (TTTC)n Simple_repeat Simple_repeat 4 178 0 2000 143 0 4 chrX 2765376 2765656 -174208484 - AluSx SINE Alu -33 279 1 664 208 0 34 chrX 2765656 2765805 -174208335 - FRAM SINE Alu -21 155 12 237 65 0 0 chrX 2765827 2765858 -174208282 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 6399 197 10 26 chrX 2765861 2766550 -174207590 - L1PA15 LINE L1 -5 6160 5462 2338 70 0 17 chrX 2766550 2766850 -174207290 - AluY SINE Alu -16 295 1 6399 197 10 26 chrX 2766850 2767021 -174207119 - L1PA15 LINE L1 -703 5462 5290 1892 137 3 36 chrX 2767021 2767348 -174206792 - AluSx SINE Alu 0 312 1 6399 197 10 26 chrX 2767348 2768810 -174205330 - L1PA15 LINE L1 -875 5290 3882 2154 84 7 10 chrX 2768950 2769246 -174204894 - AluY SINE Alu -14 297 3 1915 157 0 25 chrX 2769360 2769679 -174204461 + AluJo SINE Alu 1 311 -1 429 310 74 77 chrX 2769838 2770202 -174203938 + L2 LINE L2 1970 2332 -982 1607 178 20 26 chrX 2770664 2771046 -174203094 + L1MB3 LINE L1 5659 5998 -185 404 181 29 3 chrX 2771017 2771111 -174203029 + L1MB3 LINE L1 6060 6143 -28 * 1509 205 0 35 chrX 2771114 2771402 -174202738 + AluJo SINE Alu 7 284 -28 23 33 0 0 chrX 2771449 2771479 -174202661 + AT_rich Low_complexity Low_complexity 1 30 0 413 370 31 43 chrX 2771535 2771884 -174202256 + L2 LINE L2 2570 2914 -400 2085 129 24 12 chrX 2772001 2772342 -174201798 + MLT1A1 LTR MaLR 1 345 -20 1973 120 3 17 chrX 2772404 2772704 -174201436 - AluSg SINE Alu -14 296 1 1630 164 58 0 chrX 2774164 2774438 -174199702 + AluJb SINE Alu 1 290 -22 1278 173 0 18 chrX 2775538 2775764 -174198376 + AluJo SINE Alu 83 304 -8 2260 118 0 0 chrX 2775803 2776100 -174198040 + AluSx SINE Alu 1 297 -15 327 200 0 15 chrX 2776168 2776233 -174197907 - MLT1E2 LTR MaLR -5 621 558 973 156 0 0 chrX 2776233 2776374 -174197766 + FRAM SINE Alu 20 160 -16 324 186 0 14 chrX 2776381 2776451 -174197689 - MLT1B LTR MaLR -67 438 370 2486 180 39 34 chrX 2776451 2776608 -174197532 - L1MB3 LINE L1 -56 6127 5972 4969 76 8 13 chrX 2776608 2777279 -174196861 + PABL_B LTR ERV1 1 667 0 2486 180 39 34 chrX 2777279 2777368 -174196772 - L1MB3 LINE L1 -211 5972 5885 2102 177 18 0 chrX 2777368 2777764 -174196376 + MER57A LTR ERV1 1 403 0 2486 180 39 34 chrX 2777764 2778082 -174196058 - L1MB3 LINE L1 -298 5885 5559 2050 98 0 4 chrX 2778183 2778449 -174195691 - AluSq SINE Alu -48 265 1 1631 184 0 27 chrX 2778466 2778760 -174195380 - AluJb SINE Alu -24 288 3 939 193 6 0 chrX 2778762 2778938 -174195202 - MLT1B LTR MaLR -213 177 1 1167 136 5 35 chrX 2779693 2779916 -174194224 - AluJo SINE Alu 0 306 90 1828 179 0 0 chrX 2780079 2780403 -174193737 + L1MA9 LINE L1 5464 5787 -525 606 123 29 29 chrX 2780413 2780584 -174193556 + (TCTA)n Simple_repeat Simple_repeat 4 174 0 634 130 11 43 chrX 2780627 2780811 -174193329 + (TCTA)n Simple_repeat Simple_repeat 3 180 0 1266 228 72 70 chrX 2780812 2781282 -174192858 + L1MA9 LINE L1 5804 6274 -38 21 0 0 0 chrX 2781283 2781304 -174192836 + AT_rich Low_complexity Low_complexity 1 21 0 776 156 0 15 chrX 2781559 2781694 -174192446 + FLAM_C SINE Alu 1 133 -10 1590 160 0 70 chrX 2782716 2783016 -174191124 + AluJo SINE Alu 1 279 -33 357 24 0 0 chrX 2784341 2784383 -174189757 + (TA)n Simple_repeat Simple_repeat 1 42 0 780 130 22 29 chrX 2784493 2784631 -174189509 - AluJo SINE Alu -175 137 1 280 85 21 0 chrX 2785582 2785629 -174188511 - MADE1 DNA Mariner 0 80 33 207 100 0 0 chrX 2785889 2785919 -174188221 + (A)n Simple_repeat Simple_repeat 1 30 0 286 179 0 0 chrX 2786698 2786754 -174187386 + L1MA9 LINE L1 5943 5998 -191 1160 194 48 39 chrX 2786828 2786988 -174187152 + L1MA9 LINE L1 5995 6152 -160 459 0 0 0 chrX 2786988 2787039 -174187101 + (CA)n Simple_repeat Simple_repeat 1 51 0 1160 194 48 39 chrX 2787039 2787059 -174187081 + L1MA9 LINE L1 6152 6170 -142 2473 169 50 67 chrX 2787059 2787682 -174186458 - LTR9 LTR ERV1 0 612 1 1160 194 48 39 chrX 2787682 2787810 -174186330 + L1MA9 LINE L1 6170 6307 -5 23 0 0 0 chrX 2788357 2788380 -174185760 + AT_rich Low_complexity Low_complexity 1 23 0 723 118 31 16 chrX 2788490 2788727 -174185413 + (TCTA)n Simple_repeat Simple_repeat 1 240 0 868 139 10 19 chrX 2788765 2789082 -174185058 + (TCTA)n Simple_repeat Simple_repeat 1 313 0 467 182 7 26 chrX 2789105 2789259 -174184881 + (TCTA)n Simple_repeat Simple_repeat 3 153 0 323 179 8 12 chrX 2789267 2789390 -174184750 - Tigger2 DNA MER2_type 0 2718 2554 * 772 208 19 51 chrX 2789389 2789605 -174184535 - Tigger2 DNA MER2_type -2508 210 2 696 285 112 19 chrX 2790154 2790421 -174183719 - MLT1E LTR MaLR -11 582 291 731 136 32 16 chrX 2790917 2791042 -174183098 + FLAM_A SINE Alu 16 142 0 334 267 159 11 chrX 2791112 2791288 -174182852 + L1ME3A LINE L1 5311 5512 -650 1814 179 0 0 chrX 2791321 2791633 -174182507 + AluJo SINE Alu 1 312 0 470 308 77 15 chrX 2791638 2791911 -174182229 + L1ME3A LINE L1 5594 5883 -287 2539 59 3 0 chrX 2791918 2792223 -174181917 + AluY SINE Alu 1 306 -5 236 264 33 41 chrX 2792267 2792388 -174181752 + L1ME3A LINE L1 6046 6165 -5 2272 88 3 7 chrX 2792826 2793131 -174181009 - AluSc SINE Alu -5 304 1 2228 135 106 34 chrX 2795133 2795529 -174178611 - L1PA16 LINE L1 -45 6121 5688 2377 90 10 0 chrX 2795529 2795830 -174178310 - AluSc SINE Alu -5 304 1 2228 135 106 34 chrX 2795830 2795876 -174178264 - L1PA16 LINE L1 -478 5688 5647 23 86 0 0 chrX 2795901 2795959 -174178181 + AT_rich Low_complexity Low_complexity 1 58 0 571 213 0 0 chrX 2796808 2796916 -174177224 - AluJb SINE Alu -23 289 182 25 0 0 0 chrX 2796927 2796952 -174177188 + AT_rich Low_complexity Low_complexity 1 25 0 729 160 8 0 chrX 2797015 2797140 -174177000 + MER57A LTR ERV1 2 127 -276 269 239 11 54 chrX 2797304 2797396 -174176744 + (CATA)n Simple_repeat Simple_repeat 4 91 0 236 322 0 0 chrX 2797396 2797486 -174176654 - L1MC4 LINE L1 -1339 6703 6614 346 194 0 60 chrX 2797491 2797814 -174176326 + (TA)n Simple_repeat Simple_repeat 1 303 0 219 226 9 17 chrX 2797852 2797905 -174176235 + (TA)n Simple_repeat Simple_repeat 1 53 -61 2601 131 5 38 chrX 2797905 2798354 -174175786 - Tigger2a DNA MER2_type 0 434 1 219 226 9 17 chrX 2798354 2798415 -174175725 + (TA)n Simple_repeat Simple_repeat 53 114 0 282 179 0 0 chrX 2798851 2798907 -174175233 + (TG)n Simple_repeat Simple_repeat 2 57 0 21 89 0 0 chrX 2799096 2799152 -174174988 + AT_rich Low_complexity Low_complexity 1 56 0 370 256 24 18 chrX 2799245 2799409 -174174731 + (TA)n Simple_repeat Simple_repeat 1 165 0 341 273 16 44 chrX 2799348 2799531 -174174609 + (CATATA)n Simple_repeat Simple_repeat 2 179 0 * 298 275 158 18 chrX 2800057 2800228 -174173912 - MIR SINE MIR -40 222 28 2198 105 7 0 chrX 2800601 2800896 -174173244 - AluSx SINE Alu -15 297 1 300 27 0 0 chrX 2801346 2801383 -174172757 + (CA)n Simple_repeat Simple_repeat 2 38 0 1508 170 11 11 chrX 2801413 2801719 -174172421 - AluSx SINE Alu 0 306 1 400 122 22 78 chrX 2801823 2802003 -174172137 + (TTATA)n Simple_repeat Simple_repeat 1 170 0 27 49 0 0 chrX 2802009 2802050 -174172090 + AT_rich Low_complexity Low_complexity 1 41 0 219 200 29 0 chrX 2802115 2802185 -174171955 + (TA)n Simple_repeat Simple_repeat 1 72 0 35 54 0 0 chrX 2802185 2802241 -174171899 + AT_rich Low_complexity Low_complexity 1 56 0 475 260 94 43 chrX 2802400 2802432 -174171708 - MLT1G LTR MaLR -2 588 559 1376 193 128 21 chrX 2802432 2802815 -174171325 - MSTB LTR MaLR 0 426 3 475 260 94 43 chrX 2802815 2803017 -174171123 - MLT1G LTR MaLR -31 559 342 262 245 170 68 chrX 2803010 2803157 -174170983 - MLT1G LTR MaLR -332 223 62 * 1636 175 3 29 chrX 2803158 2803466 -174170674 - AluJo SINE Alu -7 305 6 1675 177 3 23 chrX 2804028 2804333 -174169807 - AluJb SINE Alu -13 299 1 568 0 65 0 chrX 2805099 2805176 -174168964 + (TTTTA)n Simple_repeat Simple_repeat 2 83 0 1596 175 0 34 chrX 2805178 2805470 -174168670 - AluJo SINE Alu -30 282 1 209 222 0 0 chrX 2805509 2805554 -174168586 + MIR SINE MIR 218 262 0 22 0 0 0 chrX 2805705 2805727 -174168413 + AT_rich Low_complexity Low_complexity 1 22 0 2137 136 21 42 chrX 2806492 2806874 -174167266 - THE1C LTR MaLR -1 374 1 223 236 0 0 chrX 2807165 2807220 -174166920 + (TG)n Simple_repeat Simple_repeat 2 56 0 262 333 14 14 chrX 2808197 2808344 -174165796 - MIR3 SINE MIR -11 197 51 269 116 23 0 chrX 2808865 2808908 -174165232 + MLT1D LTR MaLR 6 49 -456 253 213 43 0 chrX 2808909 2808956 -174165184 + MLT1D LTR MaLR 1 49 -456 261 163 23 0 chrX 2808963 2809006 -174165134 + MLT1D LTR MaLR 7 50 -455 285 140 40 40 chrX 2809007 2809057 -174165083 + MLT1D LTR MaLR 1 50 -455 308 143 20 0 chrX 2809058 2809107 -174165033 + MLT1D LTR MaLR 1 50 -455 298 189 19 0 chrX 2809108 2809161 -174164979 + MLT1D LTR MaLR 1 54 -451 255 167 24 0 chrX 2809154 2809196 -174164944 + MLT1D LTR MaLR 8 50 -455 * 285 116 47 0 chrX 2809197 2809240 -174164900 + MLT1D LTR MaLR 1 45 -460 263 240 20 0 chrX 2809247 2809297 -174164843 + MLT1D LTR MaLR 1 51 -454 300 213 107 0 chrX 2809297 2809372 -174164768 + MLT1D LTR MaLR 1 83 -422 1691 222 96 14 chrX 2809474 2809818 -174164322 + MLT1D LTR MaLR 43 430 -75 3028 93 7 0 chrX 2809818 2810236 -174163904 - L1PA13 LINE L1 0 6163 5743 1691 222 96 14 chrX 2810236 2810319 -174163821 + MLT1D LTR MaLR 430 505 0 476 191 44 7 chrX 2810925 2811061 -174163079 + MER96B DNA MER1_type? 81 221 -196 24 0 0 0 chrX 2811159 2811183 -174162957 + AT_rich Low_complexity Low_complexity 1 24 0 1573 163 0 23 chrX 2811186 2811410 -174162730 - AluSx SINE Alu -53 259 40 5156 76 3 39 chrX 2811410 2812124 -174162016 + LTR12 LTR ERV1 1 688 0 1573 163 0 23 chrX 2812124 2812157 -174161983 - AluSx SINE Alu -272 40 8 2034 212 47 53 chrX 2812161 2812556 -174161584 - L1MB7 LINE L1 -69 6115 5724 1406 33 33 0 chrX 2812556 2812738 -174161402 - L1MA1 LINE L1 -4 6298 6111 2034 212 47 53 chrX 2812738 2813002 -174161138 - L1MB7 LINE L1 -460 5724 5460 233 167 0 0 chrX 2813048 2813096 -174161044 - L1M4c LINE L1 -3948 2698 2651 1542 232 64 127 chrX 2813164 2814247 -174159893 - L1M4c LINE L1 -5512 1030 16 1657 201 3 23 chrX 2815204 2815513 -174158627 + AluJb SINE Alu 1 303 -9 505 226 34 45 chrX 2816041 2816218 -174157922 + MER96B DNA MER1_type? 1 175 -242 2559 52 3 0 chrX 2816289 2816596 -174157544 - AluY SINE Alu -3 308 1 961 245 21 10 chrX 2816759 2817117 -174157023 + MLT1B LTR MaLR 1 343 -124 911 261 26 15 chrX 2817121 2817393 -174156747 + MLT1C LTR MaLR 193 467 0 1599 155 143 103 chrX 2818257 2818753 -174155387 - L1MB3 LINE L1 -7 6176 5661 572 158 18 26 chrX 2818753 2818849 -174155291 - AluJo/FRAM SINE Alu 0 312 216 1478 156 3 90 chrX 2818849 2819150 -174154990 - AluJb SINE Alu -37 275 1 572 158 18 26 chrX 2819150 2819167 -174154973 - AluJo/FRAM SINE Alu -96 216 200 253 173 19 0 chrX 2819167 2819219 -174154921 - L1MB3 LINE L1 -647 5658 5606 369 119 104 0 chrX 2819219 2819286 -174154854 - MADE1 DNA Mariner 0 80 7 791 261 20 5 chrX 2819617 2819820 -174154320 - MER58A DNA MER1_type 0 224 19 807 204 91 72 chrX 2820163 2820570 -174153570 - MLT2B1 LTR ERVL 0 520 1 1274 84 6 12 chrX 2820606 2820772 -174153368 - AluSp SINE Alu -16 297 133 950 119 34 17 chrX 2820876 2821053 -174153087 - AluSq SINE Alu -129 184 5 1466 185 78 37 chrX 2821132 2821515 -174152625 + LTR2B LTR ERV1 34 432 -58 392 329 117 49 chrX 2821956 2822953 -174151187 - L1 LINE L1 -942 5204 4128 318 106 0 0 chrX 2823033 2823080 -174151060 + (TA)n Simple_repeat Simple_repeat 2 48 0 456 213 110 55 chrX 2823340 2823504 -174150636 - MER58B DNA MER1_type -1 340 168 1014 176 0 6 chrX 2824614 2824773 -174149367 - AluJb SINE Alu -26 286 129 833 166 11 17 chrX 2825016 2825338 -174148802 + GA-rich Low_complexity Low_complexity 1 320 0 249 263 13 0 chrX 2826675 2826751 -174147389 - L1MC3 LINE L1 -304 7481 7405 239 116 47 0 chrX 2826778 2826821 -174147319 + MER4A LTR ERV1 54 98 -566 1690 135 3 30 chrX 2826821 2827176 -174146964 + MER4A LTR ERV1 261 664 0 1282 221 46 14 chrX 2827176 2827547 -174146593 - L1MC3 LINE L1 -377 7408 7026 294 375 71 6 chrX 2827858 2828026 -174146114 + MIR SINE MIR 47 225 -37 1349 196 0 41 chrX 2828088 2828358 -174145782 + AluJo SINE Alu 30 288 -24 702 154 0 0 chrX 2828365 2828469 -174145671 + FRAM SINE Alu 37 140 -36 21 0 0 0 chrX 2829441 2829462 -174144678 + AT_rich Low_complexity Low_complexity 1 21 0 2235 70 0 7 chrX 2829955 2830266 -174143874 - AluY SINE Alu 0 309 1 2420 203 30 16 chrX 2830266 2830786 -174143354 + MLT2B3 LTR ERVL 1 418 -35 364 186 32 8 chrX 2830819 2830943 -174143197 + GA-rich Low_complexity Low_complexity 2 128 0 563 175 24 0 chrX 2830978 2831197 -174142943 + GA-rich Low_complexity Low_complexity 1 224 0 273 119 0 0 chrX 2831382 2831424 -174142716 + (TG)n Simple_repeat Simple_repeat 2 43 0 21 71 0 0 chrX 2832122 2832164 -174141976 + AT_rich Low_complexity Low_complexity 1 42 0 23 33 0 0 chrX 2834254 2834284 -174139856 + AT_rich Low_complexity Low_complexity 1 30 0 1487 176 3 83 chrX 2834321 2834634 -174139506 + AluJb SINE Alu 1 288 -24 197 33 33 0 chrX 2834643 2834673 -174139467 + (TAAAA)n Simple_repeat Simple_repeat 4 34 0 22 35 0 0 chrX 2834765 2834794 -174139346 + AT_rich Low_complexity Low_complexity 1 29 0 2352 57 3 0 chrX 2834948 2835276 -174138864 + AluY SINE Alu 1 329 0 423 0 0 0 chrX 2835522 2835569 -174138571 + (TG)n Simple_repeat Simple_repeat 2 48 0 2013 131 3 0 chrX 2836494 2836811 -174137329 - AluSx SINE Alu 0 318 1 2962 146 60 86 chrX 2837145 2837218 -174136922 - LTR8A LTR ERV1 0 727 654 2055 136 0 23 chrX 2837218 2837527 -174136613 + AluSx SINE Alu 1 302 -10 2962 146 60 86 chrX 2837527 2838199 -174135941 - LTR8A LTR ERV1 -73 654 1 1650 202 70 30 chrX 2838233 2838417 -174135723 + MER50 LTR ERV1 287 462 -272 2418 114 28 17 chrX 2838417 2838777 -174135363 - THE1B LTR MaLR 0 364 1 1650 202 70 30 chrX 2838777 2839023 -174135117 + MER50 LTR ERV1 462 734 0 308 261 0 0 chrX 2840989 2841054 -174133086 - MER2 DNA MER2_type -1 344 280 672 124 80 7 chrX 2841073 2841210 -174132930 + L1M LINE L1 5265 5411 -889 1508 135 7 52 chrX 2841608 2841896 -174132244 + Tigger4(Zombi) DNA MER2_type 2 276 -2455 2217 120 0 0 chrX 2841896 2842196 -174131944 + AluSx SINE Alu 1 300 -12 1040 122 109 0 chrX 2842198 2842354 -174131786 + AluSg/x SINE Alu 140 312 0 1753 139 13 3 chrX 2842365 2842666 -174131474 + Tigger4(Zombi) DNA MER2_type 269 572 -2159 2679 158 13 22 chrX 2842672 2842924 -174131216 + Tigger4(Zombi) DNA MER2_type 2144 2397 -334 1875 164 27 6 chrX 2842924 2843254 -174130886 - MER1B DNA MER1_type 0 337 1 2679 158 13 22 chrX 2843254 2843539 -174130601 + Tigger4(Zombi) DNA MER2_type 2397 2676 -55 23 0 0 0 chrX 2843677 2843700 -174130440 + AT_rich Low_complexity Low_complexity 1 23 0 574 254 86 10 chrX 2844802 2844999 -174129141 - MER20 DNA MER1_type -4 215 4 691 142 15 8 chrX 2845221 2845355 -174128785 + CT-rich Low_complexity Low_complexity 1 135 0 1714 167 31 7 chrX 2845355 2845642 -174128498 - AluJo SINE Alu -18 294 1 2114 113 49 0 chrX 2845786 2846070 -174128070 - AluSx SINE Alu -14 298 1 2009 146 31 29 chrX 2846214 2846599 -174127541 + MLT1B LTR MaLR 1 386 -4 830 239 0 0 chrX 2847557 2847720 -174126420 + FRAM SINE Alu 1 160 -16 1349 186 48 35 chrX 2848159 2848333 -174125807 - MER77 LTR ERV1 -17 588 407 2257 94 0 17 chrX 2848333 2848632 -174125508 - AluY SINE Alu -17 294 1 1349 186 48 35 chrX 2848632 2848768 -174125372 - MER77 LTR ERV1 -198 407 274 545 228 35 17 chrX 2848908 2849072 -174125068 - MLT1A1 LTR MaLR 0 365 216 1435 176 87 13 chrX 2899216 2899528 -174074612 + MER44D DNA MER2_type 5 609 0 1420 187 60 18 chrX 2899750 2900033 -174074107 + AluJb SINE Alu 1 295 -17 186 43 0 0 chrX 2900043 2900066 -174074074 + (TGAA)n Simple_repeat Simple_repeat 3 25 0 2048 171 16 5 chrX 2900884 2901270 -174072870 - MLT1B LTR MaLR 0 390 1 321 283 232 0 chrX 2901527 2901665 -174072475 - MER5A DNA MER1_type -7 182 13 1333 163 57 28 chrX 2901922 2902205 -174071935 + AluJo SINE Alu 1 291 -21 22 0 0 0 chrX 2902368 2902390 -174071750 + AT_rich Low_complexity Low_complexity 1 22 0 1921 167 3 15 chrX 2902624 2902959 -174071181 + MER47A DNA MER2_type 36 366 0 1792 212 51 36 chrX 2903120 2903416 -174070724 + L1MD1 LINE L1 5764 6071 -171 1958 140 140 8 chrX 2903416 2903794 -174070346 + MSTA LTR MaLR 1 428 0 1792 212 51 36 chrX 2903794 2903969 -174070171 + L1MD1 LINE L1 6071 6242 0 1005 137 0 0 chrX 2907258 2907411 -174066729 + AluSg/x SINE Alu 132 284 -28 28 48 0 0 chrX 2907417 2907459 -174066681 + AT_rich Low_complexity Low_complexity 1 42 0 1048 228 94 22 chrX 2907675 2907995 -174066145 + MER2 DNA MER2_type 1 343 -1 1672 147 26 23 chrX 2908567 2908873 -174065267 - MLT1B LTR MaLR -83 307 1 378 0 0 0 chrX 2908938 2908980 -174065160 + (CA)n Simple_repeat Simple_repeat 2 43 0 1799 82 4 0 chrX 2909036 2909267 -174064873 - AluSp SINE Alu -17 296 65 1356 203 41 24 chrX 2910103 2910394 -174063746 - AluJo SINE Alu -5 297 2 22 35 0 0 chrX 2910664 2910693 -174063447 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chrX 2910800 2910821 -174063319 + AT_rich Low_complexity Low_complexity 1 21 0 218 96 0 58 chrX 2910889 2910941 -174063199 + (TTATA)n Simple_repeat Simple_repeat 2 50 0 572 292 17 43 chrX 2911270 2911503 -174062637 - MLT1E2 LTR MaLR -8 618 392 1255 129 224 11 chrX 2911523 2911786 -174062354 - MER47A DNA MER2_type -28 338 20 467 281 45 41 chrX 2911786 2912053 -174062087 - MLT1E2 LTR MaLR -239 387 120 2374 263 146 37 chrX 2912091 2913349 -174060791 + L1MD1 LINE L1 210 1605 -4935 1926 210 24 118 chrX 2913450 2913816 -174060324 + L1PA16 LINE L1 5499 5767 -399 414 100 0 0 chrX 2913816 2913876 -174060264 + (TA)n Simple_repeat Simple_repeat 1 60 0 1926 210 24 118 chrX 2913876 2914219 -174059921 + L1PA16 LINE L1 5767 6141 -25 1869 219 48 41 chrX 2914228 2914689 -174059451 + L1MD1 LINE L1 5374 5830 -806 1630 193 13 10 chrX 2914689 2914989 -174059151 + AluJo SINE Alu 2 302 -10 1869 219 48 41 chrX 2914989 2915384 -174058756 + L1MD1 LINE L1 5830 6220 -416 485 171 77 0 chrX 2915384 2915501 -174058639 + L1MD1 LINE L1 6500 6625 -11 1936 164 3 0 chrX 2915682 2915987 -174058153 - AluJb SINE Alu -6 306 1 229 289 70 26 chrX 2916255 2916369 -174057771 - MIR SINE MIR -32 230 112 731 130 41 0 chrX 2917700 2917869 -174056271 + (TAGA)n Simple_repeat Simple_repeat 2 177 0 1961 178 113 10 chrX 2917908 2918325 -174055815 - MLT2B1 LTR ERVL -60 460 1 284 317 37 38 chrX 2918650 2918798 -174055342 - MIR SINE MIR -74 134 12 2173 106 3 10 chrX 2919560 2919853 -174054287 - AluSp SINE Alu -22 291 1 1053 255 92 10 chrX 2919878 2920270 -174053870 - L1MC3 LINE L1 0 7785 7362 32 43 0 0 chrX 2920832 2920878 -174053262 + AT_rich Low_complexity Low_complexity 1 46 0 2209 96 24 0 chrX 2921524 2921650 -174052490 + AluSx SINE Alu 1 123 -189 189 0 0 0 chrX 2921650 2921671 -174052469 + (TAA)n Simple_repeat Simple_repeat 2 22 0 2209 96 24 0 chrX 2921671 2921837 -174052303 + AluSx SINE Alu 123 300 -12 22 0 0 0 chrX 2922130 2922152 -174051988 + AT_rich Low_complexity Low_complexity 1 22 0 312 232 159 0 chrX 2922284 2922422 -174051718 - Charlie2a DNA MER1_type -1784 1078 919 21 57 0 0 chrX 2922547 2922582 -174051558 + AT_rich Low_complexity Low_complexity 1 35 0 234 0 0 0 chrX 2922991 2923017 -174051123 + (TCTA)n Simple_repeat Simple_repeat 4 29 0 22 0 0 0 chrX 2923078 2923100 -174051040 + AT_rich Low_complexity Low_complexity 1 22 0 30 59 0 0 chrX 2923264 2923315 -174050825 + AT_rich Low_complexity Low_complexity 1 51 0 26951 39 39 1 chrX 2923575 2927130 -174047010 + L1P LINE L1 3 3694 -2452 301 246 0 0 chrX 2927342 2927411 -174046729 + L1MA1 LINE L1 6225 6293 -9 1379 243 78 10 chrX 2927488 2927887 -174046253 - L1MC3 LINE L1 -611 7174 6749 472 163 38 22 chrX 2928150 2928464 -174045676 + (TCTA)n Simple_repeat Simple_repeat 1 319 0 333 323 84 21 chrX 2928738 2929023 -174045117 - L1M4 LINE L1 -2461 3685 3383 23 0 0 0 chrX 2929052 2929075 -174045065 + AT_rich Low_complexity Low_complexity 1 23 0 197 132 26 0 chrX 2929142 2929180 -174044960 + CT-rich Low_complexity Low_complexity 2 40 0 303 28 0 0 chrX 2929966 2930002 -174044138 + (CA)n Simple_repeat Simple_repeat 2 37 0 * 366 23 0 0 chrX 2930001 2930044 -174044096 + (TC)n Simple_repeat Simple_repeat 1 43 0 304 197 7 148 chrX 2930212 2930354 -174043786 + Tigger3(Golem) DNA MER2_type 1 122 -2907 * 1677 126 90 44 chrX 2930340 2930465 -174043675 + Tigger3(Golem) DNA MER2_type 2284 2402 -626 1707 195 3 3 chrX 2930465 2930792 -174043348 + AluJo SINE Alu 1 312 0 1677 126 90 44 chrX 2930792 2931055 -174043085 + Tigger3(Golem) DNA MER2_type 2402 2690 -338 360 188 0 0 chrX 2931279 2931359 -174042781 + L1MEc LINE L1 2177 2256 -4140 497 308 44 56 chrX 2931394 2931732 -174042408 + L1MEc LINE L1 2255 2588 -3627 640 212 9 0 chrX 2931746 2931975 -174042165 + GA-rich Low_complexity Low_complexity 1 231 0 587 219 20 9 chrX 2932007 2932359 -174041781 + GA-rich Low_complexity Low_complexity 1 356 0 2362 166 2 5 chrX 2933302 2933713 -174040427 + MER66B LTR ERV1 1 410 -76 431 298 31 31 chrX 2934295 2934456 -174039684 - MER5A DNA MER1_type -27 162 2 1873 147 3 13 chrX 2934570 2934883 -174039257 + AluSx SINE Alu 1 310 -2 3018 190 11 54 chrX 2935005 2935225 -174038915 + LTR51 LTR ERV1 1 229 -442 2125 116 0 3 chrX 2935225 2935543 -174038597 - AluSx SINE Alu 0 317 1 3018 190 11 54 chrX 2935543 2936021 -174038119 + LTR51 LTR ERV1 229 670 -1 2505 59 0 3 chrX 2936222 2936525 -174037615 + AluY SINE Alu 3 304 -7 2401 195 27 63 chrX 2936607 2937242 -174036898 - LTR9 LTR ERV1 0 612 1 1923 229 24 15 chrX 2937417 2937880 -174036260 + LTR24 LTR ERV1 1 467 0 1884 149 3 29 chrX 2937899 2938208 -174035932 - AluJo SINE Alu -11 301 1 2054 125 76 15 chrX 2938501 2938844 -174035296 + THE1B LTR MaLR 1 364 0 230 136 45 45 chrX 2939322 2939388 -174034752 + L1MA9 LINE L1 6239 6304 -8 1619 110 195 23 chrX 2940506 2940814 -174033326 - MER4A LTR ERV1 -43 621 261 485 155 21 10 chrX 2940814 2940911 -174033229 - MER4A LTR ERV1 -566 98 1 288 0 0 0 chrX 2941593 2941625 -174032515 + (TATG)n Simple_repeat Simple_repeat 1 32 0 873 105 35 0 chrX 2941625 2941796 -174032344 + (TCTA)n Simple_repeat Simple_repeat 2 178 0 189 74 0 0 chrX 2941828 2941855 -174032285 + (TC)n Simple_repeat Simple_repeat 2 28 0 427 133 0 42 chrX 2941860 2941980 -174032160 + (TCTA)n Simple_repeat Simple_repeat 3 117 0 413 293 33 13 chrX 2943343 2943493 -174030647 + MIR SINE MIR 107 259 -3 190 107 47 67 chrX 2943532 2943681 -174030459 + (TTATA)n Simple_repeat Simple_repeat 5 150 0 33 25 0 0 chrX 2944252 2944292 -174029848 + AT_rich Low_complexity Low_complexity 1 40 0 213 121 0 0 chrX 2944957 2944990 -174029150 + (T)n Simple_repeat Simple_repeat 1 33 0 465 19 0 0 chrX 2945710 2945764 -174028376 + (TG)n Simple_repeat Simple_repeat 1 54 0 1637 161 3 39 chrX 2945815 2946021 -174028119 - AluJo SINE Alu -18 294 101 2429 107 27 3 chrX 2946021 2946387 -174027753 + THE1C LTR MaLR 1 375 0 1637 161 3 39 chrX 2946387 2946485 -174027655 - AluJo SINE Alu -211 101 1 1067 70 23 12 chrX 2946988 2947159 -174026981 + (TCTA)n Simple_repeat Simple_repeat 2 174 0 720 89 16 8 chrX 2947273 2947397 -174026743 + (TCTA)n Simple_repeat Simple_repeat 2 126 0 1883 180 12 21 chrX 2947881 2948011 -174026129 + MLT2B2 LTR ERVL 1 131 -384 2373 118 14 11 chrX 2948011 2948374 -174025766 + THE1B LTR MaLR 1 364 0 1883 180 12 21 chrX 2948374 2948675 -174025465 + MLT2B2 LTR ERVL 131 476 -39 427 221 16 0 chrX 2948707 2948834 -174025306 + (TCCA)n Simple_repeat Simple_repeat 1 129 0 2069 153 32 8 chrX 2949521 2949894 -174024246 + MLT1B LTR MaLR 1 382 -8 24 0 0 0 chrX 2950915 2950939 -174023201 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chrX 2951751 2951779 -174022361 + AT_rich Low_complexity Low_complexity 1 28 0 1538 160 9 0 chrX 2951781 2952012 -174022128 - AluJo SINE Alu -75 237 5 986 182 0 23 chrX 2952526 2952702 -174021438 - AluJ SINE Alu 0 312 141 710 184 102 20 chrX 2952739 2952762 -174021378 - AluJ SINE Alu -153 159 139 189 0 0 0 chrX 2952762 2952783 -174021357 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 710 184 102 20 chrX 2952783 2952906 -174021234 - AluJ SINE Alu -173 139 1 5426 45 1 0 chrX 2953319 2953980 -174020160 + L1PA5 LINE L1 5486 6147 -7 2626 116 3 0 chrX 2955367 2955729 -174018411 + THE1B LTR MaLR 1 363 -1 1422 178 21 0 chrX 2955766 2956047 -174018093 + L1PB4 LINE L1 5868 6154 -2 25 65 0 0 chrX 2956054 2956100 -174018040 + AT_rich Low_complexity Low_complexity 1 46 0 2029 123 0 7 chrX 2956263 2956563 -174017577 + AluJb SINE Alu 1 298 -14 832 159 39 0 chrX 2956691 2956963 -174017177 - L1MA5A LINE L1 -5 6292 5961 2259 113 0 0 chrX 2956963 2957273 -174016867 - AluSq SINE Alu -3 310 1 832 159 39 0 chrX 2957273 2957323 -174016817 - L1MA5A LINE L1 -336 5961 5914 855 171 0 0 chrX 2957351 2957497 -174016643 - L1PA16 LINE L1 -2 6164 6019 233 308 33 11 chrX 2957883 2957974 -174016166 + MIR SINE MIR 35 127 -135 1905 129 42 58 chrX 2958327 2958708 -174015432 - THE1C LTR MaLR 0 375 1 781 219 26 53 chrX 2958875 2959477 -174014663 + MER4C LTR ERV1 1 693 -6 208 299 103 10 chrX 2960898 2960995 -174013145 - MER5A DNA MER1_type -77 112 7 433 304 131 6 chrX 2961009 2961177 -174012963 - MER5A DNA MER1_type 0 189 1 199 316 127 0 chrX 2961193 2961272 -174012868 - MER5B DNA MER1_type 0 178 90 2267 186 20 40 chrX 2961275 2961830 -174012310 - L1PA16 LINE L1 -2 6164 5621 3672 205 27 64 chrX 2961945 2962989 -174011151 - L1PA16 LINE L1 -784 5362 4358 195 333 0 0 chrX 2963005 2963068 -174011072 + MER5B DNA MER1_type 115 177 -1 493 219 5 10 chrX 2963641 2963843 -174010297 + CT-rich Low_complexity Low_complexity 1 200 0 824 185 0 6 chrX 2963856 2964029 -174010111 + CT-rich Low_complexity Low_complexity 3 174 0 221 284 86 12 chrX 2964033 2964114 -174010026 + MIR SINE MIR 108 194 -68 543 185 21 35 chrX 2965479 2965806 -174008334 + CT-rich Low_complexity Low_complexity 1 322 0 251 219 21 31 chrX 2965948 2966044 -174008096 + (TAGA)n Simple_repeat Simple_repeat 3 97 0 286 141 13 26 chrX 2966300 2966343 -174007797 + (TAGA)n Simple_repeat Simple_repeat 1 44 -33 2217 72 27 14 chrX 2966343 2966635 -174007505 + AluSx SINE Alu 11 306 -6 286 141 13 26 chrX 2966635 2966669 -174007471 + (TAGA)n Simple_repeat Simple_repeat 44 77 0 8727 27 2 1 chrX 2967173 2968989 -174005151 - L1PA2 LINE L1 -5 6150 4335 26 0 0 0 chrX 2969494 2969520 -174004620 + AT_rich Low_complexity Low_complexity 1 26 0 1479 186 10 10 chrX 2969906 2970202 -174003938 + AluJb SINE Alu 7 302 -10 2399 164 54 5 chrX 2970745 2971172 -174002968 + MER83 LTR ERV1 1 448 0 1541 206 24 22 chrX 2971389 2971758 -174002382 + L1PA16 LINE L1 5657 6026 -140 639 160 25 15 chrX 2971881 2972047 -174002093 + CT-rich Low_complexity Low_complexity 1 196 -32 201 39 0 0 chrX 2972047 2972073 -174002067 + (TTG)n Simple_repeat Simple_repeat 2 27 0 639 160 25 15 chrX 2972073 2972107 -174002033 + CT-rich Low_complexity Low_complexity 196 228 0 349 123 0 18 chrX 2973416 2973469 -174000671 - AluJo SINE Alu -12 290 239 1459 219 156 72 chrX 2973469 2973669 -174000471 + LTR1 LTR ERV1 1 183 -602 246 62 0 0 chrX 2973669 2973701 -174000439 + (CA)n Simple_repeat Simple_repeat 1 32 0 1459 219 156 72 chrX 2973701 2974223 -173999917 + LTR1 LTR ERV1 183 784 -1 1388 163 0 48 chrX 2974223 2974474 -173999666 - AluJo SINE Alu -70 242 4 531 227 25 81 chrX 2974619 2974818 -173999322 + MER106B DNA MER1_type 1 210 -849 1504 184 12 70 chrX 2974818 2975149 -173998991 + AluJb SINE Alu 1 312 0 531 227 25 81 chrX 2975149 2975178 -173998962 + MER106B DNA MER1_type 210 1043 -16 195 204 0 0 chrX 2975500 2975549 -173998591 + (TA)n Simple_repeat Simple_repeat 1 49 0 2750 164 15 33 chrX 2975684 2976225 -173997915 + LTR26B LTR ERV1 1 531 0 257 320 20 0 chrX 2977202 2977302 -173996838 + MLT1J LTR MaLR 80 181 -330 1828 208 65 114 chrX 2977722 2978095 -173996045 + LTR8A LTR ERV1 1 320 -407 2431 118 5 18 chrX 2978095 2978475 -173995665 + THE1C LTR MaLR 1 375 0 1828 208 65 114 chrX 2978475 2978864 -173995276 + LTR8A LTR ERV1 320 726 -1 324 270 10 0 chrX 2979003 2979103 -173995037 + MLT1I LTR MaLR 309 409 0 432 277 32 26 chrX 2979252 2979407 -173994733 - LTR16A1 LTR ERVL -4 453 298 315 0 0 0 chrX 2980728 2980763 -173993377 + (TG)n Simple_repeat Simple_repeat 2 36 0 24 32 0 0 chrX 2980993 2981024 -173993116 + AT_rich Low_complexity Low_complexity 1 31 0 286 247 37 0 chrX 2981581 2981662 -173992478 + (TA)n Simple_repeat Simple_repeat 2 85 0 31 44 0 0 chrX 2981674 2981719 -173992421 + AT_rich Low_complexity Low_complexity 1 45 0 281 161 0 0 chrX 2981722 2981778 -173992362 - L1PB4 LINE L1 -1 6155 6100 186 236 0 0 chrX 2981783 2981838 -173992302 + (TATATG)n Simple_repeat Simple_repeat 6 60 0 34 55 0 0 chrX 2982007 2982062 -173992078 + AT_rich Low_complexity Low_complexity 1 55 0 494 237 119 0 chrX 2982066 2982184 -173991956 - FLAM_A SINE Alu -1 132 1 920 164 0 7 chrX 2982914 2983066 -173991074 + FRAM SINE Alu 2 152 -14 899 293 86 112 chrX 2983222 2983889 -173990251 + L2 LINE L2 1839 2522 -791 3150 146 10 2 chrX 2983889 2984381 -173989759 + LOR1a LTR ERV1 1 496 -1 899 293 86 112 chrX 2984381 2984530 -173989610 + L2 LINE L2 2522 2673 -640 1982 129 0 14 chrX 2984530 2984860 -173989280 - AluSx SINE Alu 0 326 1 899 293 86 112 chrX 2984860 2985576 -173988564 + L2 LINE L2 2673 3307 -6 2376 82 0 19 chrX 2986180 2986495 -173987645 + AluY SINE Alu 3 311 0 213 65 0 0 chrX 2986548 2986579 -173987561 + (A)n Simple_repeat Simple_repeat 1 31 0 353 284 34 28 chrX 2986581 2986757 -173987383 + L1MC/D LINE L1 5272 5448 -2360 257 291 25 23 chrX 2986993 2987155 -173986985 + L1MC/D LINE L1 5665 5825 -312 180 0 0 0 chrX 2987182 2987202 -173986938 + (TA)n Simple_repeat Simple_repeat 2 21 0 493 311 58 5 chrX 2987202 2987392 -173986748 - MIR SINE MIR -35 227 28 207 0 0 0 chrX 2987430 2987453 -173986687 + (CATATA)n Simple_repeat Simple_repeat 5 27 0 793 159 0 15 chrX 2987468 2987600 -173986540 + FLAM_C SINE Alu 2 131 -2 268 230 10 10 chrX 2987645 2987745 -173986395 + (TA)n Simple_repeat Simple_repeat 1 100 0 422 88 11 132 chrX 2987748 2987839 -173986301 + MADE1 DNA Mariner 1 80 0 2285 76 6 31 chrX 2988017 2988334 -173985806 + AluY SINE Alu 1 309 -2 26 0 0 0 chrX 2988334 2988360 -173985780 + AT_rich Low_complexity Low_complexity 1 26 0 244 286 128 23 chrX 2989392 2989525 -173984615 - MIR SINE MIR -42 220 74 1566 151 16 87 chrX 2990729 2991041 -173983099 - AluJo SINE Alu -21 291 2 1055 286 68 52 chrX 2991898 2992706 -173981434 - L1ME3A LINE L1 -94 6076 5255 279 299 99 10 chrX 2992766 2992836 -173981304 - L1ME3A LINE L1 -925 5221 5159 2125 135 30 28 chrX 2992836 2993199 -173980941 + THE1B LTR MaLR 1 364 0 279 299 99 10 chrX 2993199 2993329 -173980811 - L1ME3A LINE L1 -987 5159 5003 244 293 166 13 chrX 2993646 2993803 -173980337 - L1ME3A LINE L1 -2272 3874 3694 * 271 272 128 11 chrX 2993796 2993976 -173980164 - L1M4 LINE L1 -1538 4608 4408 353 270 0 0 chrX 2994319 2994393 -173979747 - MER5A DNA MER1_type -99 90 17 1658 197 0 7 chrX 2994876 2995171 -173978969 + AluJo SINE Alu 3 295 -17 1616 193 0 41 chrX 2995234 2995550 -173978590 - AluJb SINE Alu -8 304 2 883 154 83 12 chrX 2998199 2998368 -173975772 + MER20 DNA MER1_type 34 214 -5 21 36 0 0 chrX 2998876 2998904 -173975236 + AT_rich Low_complexity Low_complexity 1 28 0 2441 153 28 19 chrX 2998905 2999335 -173974805 + Tigger2a DNA MER2_type 1 434 0 1945 155 0 0 chrX 2999361 2999668 -173974472 + AluSx SINE Alu 1 307 0 1448 121 56 0 chrX 2999903 3000152 -173973988 - L1MA4 LINE L1 0 6300 6038 380 341 59 36 chrX 3000995 3001353 -173972787 + L1M4 LINE L1 2480 2845 -3301 1802 149 36 0 chrX 3001381 3001683 -173972457 + AluSq SINE Alu 1 313 0 383 123 0 27 chrX 3001689 3001762 -173972378 + (GAAA)n Simple_repeat Simple_repeat 4 74 0 250 171 24 49 chrX 3001882 3001964 -173972176 + (TCTA)n Simple_repeat Simple_repeat 2 81 0 2650 182 34 61 chrX 3002124 3003111 -173971029 + L1MA10 LINE L1 4626 5607 -561 662 147 0 18 chrX 3003111 3003220 -173970920 + FLAM_C SINE Alu 14 120 -23 330 87 0 0 chrX 3003221 3003267 -173970873 + (TA)n Simple_repeat Simple_repeat 1 46 0 3314 178 36 23 chrX 3003271 3004002 -173970138 + L1MA10 LINE L1 5594 6333 -1 410 158 40 0 chrX 3004590 3004666 -173969474 + MADE1 DNA Mariner 2 80 0 24 0 0 0 chrX 3005104 3005128 -173969012 + AT_rich Low_complexity Low_complexity 1 24 0 1341 185 14 42 chrX 3005496 3005664 -173968476 + AluJb SINE Alu 1 159 -153 2048 139 232 34 chrX 3005664 3006104 -173968036 - MER1A DNA MER1_type 0 527 1 1341 185 14 42 chrX 3006104 3006222 -173967918 + AluJb SINE Alu 159 279 -33 213 65 0 0 chrX 3006222 3006253 -173967887 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 266 159 48 28 chrX 3006626 3006771 -173967369 + (TCTA)n Simple_repeat Simple_repeat 2 149 0 23 0 0 0 chrX 3006929 3006952 -173967188 + AT_rich Low_complexity Low_complexity 1 23 0 25 31 0 0 chrX 3007574 3007606 -173966534 + AT_rich Low_complexity Low_complexity 1 32 0 37 52 0 0 chrX 3007627 3007685 -173966455 + AT_rich Low_complexity Low_complexity 1 58 0 2365 274 101 35 chrX 3008473 3010433 -173963707 + L1MEc LINE L1 638 2686 -3529 561 192 20 20 chrX 3010491 3010637 -173963503 - L1MA10 LINE L1 -7 6327 6182 207 114 0 0 chrX 3011076 3011111 -173963029 + (CA)n Simple_repeat Simple_repeat 2 36 0 1062 171 0 6 chrX 3012479 3012660 -173961480 - AluJb SINE Alu -16 296 117 1641 143 68 8 chrX 3012660 3012926 -173961214 - AluJo SINE Alu -30 282 1 2687 162 83 2 chrX 3013175 3013681 -173960459 + MER44D DNA MER2_type 2 603 -2 4104 100 14 88 chrX 3013704 3014421 -173959719 + MER4A LTR ERV1 1 664 0 377 361 132 24 chrX 3014428 3014852 -173959288 - L1MEc LINE L1 -5893 503 34 932 191 0 0 chrX 3015174 3015336 -173958804 - AluJb SINE Alu -4 308 147 182 105 26 0 chrX 3015598 3015636 -173958504 + T-rich Low_complexity Low_complexity 3 41 0 405 127 14 0 chrX 3015715 3015786 -173958354 - AluS SINE Alu -237 72 1 1890 161 6 19 chrX 3018048 3018364 -173955776 + AluJo SINE Alu 1 312 0 1867 170 120 0 chrX 3019298 3019680 -173954460 - MSTA LTR MaLR 0 428 1 9936 149 16 14 chrX 3019718 3020454 -173953686 - L1PA13 LINE L1 -281 5882 5148 2486 125 5 8 chrX 3020454 3020830 -173953310 + THE1C LTR MaLR 1 375 0 9936 149 16 14 chrX 3020830 3021704 -173952436 - L1PA13 LINE L1 -1015 5148 4269 978 93 0 7 chrX 3021704 3021844 -173952296 - MER85 DNA T2_type 0 139 1 9936 149 16 14 chrX 3021844 3022641 -173951499 - L1PA13 LINE L1 -1894 4269 3475 202 386 26 26 chrX 3022862 3023090 -173951050 - L2 LINE L2 -1357 1957 1730 198 0 0 0 chrX 3023190 3023212 -173950928 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 1663 184 36 16 chrX 3024368 3024673 -173949467 + AluSx SINE Alu 2 312 0 2555 242 26 29 chrX 3025071 3025425 -173948715 - MER76 LTR ERV -29 659 306 1793 145 60 33 chrX 3025425 3025790 -173948350 - THE1C LTR MaLR 0 375 1 2555 242 26 29 chrX 3025790 3026096 -173948044 - MER76 LTR ERV -382 306 1 1434 204 3 22 chrX 3026133 3026446 -173947694 + AluJo SINE Alu 1 307 -5 4915 143 35 21 chrX 3027016 3028018 -173946122 + L1PA15 LINE L1 5148 6164 -1 298 201 15 67 chrX 3028422 3028556 -173945584 + (CATATA)n Simple_repeat Simple_repeat 4 130 0 1804 132 3 10 chrX 3028556 3028851 -173945289 + L1PA16 LINE L1 5715 6007 -159 225 224 52 0 chrX 3028850 3028908 -173945232 + L1MD3 LINE L1 6615 6675 -1320 * 1628 143 4 0 chrX 3029766 3030004 -173944136 + AluSx SINE Alu 1 239 -73 189 0 0 0 chrX 3030014 3030035 -173944105 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 530 100 40 0 chrX 3032428 3032528 -173941612 + GA-rich Low_complexity Low_complexity 1 104 0 189 328 28 79 chrX 3032528 3032705 -173941435 - L3 LINE CR1 -25 1552 1385 22 0 0 0 chrX 3032769 3032791 -173941349 + AT_rich Low_complexity Low_complexity 1 22 0 29 60 0 0 chrX 3033017 3033067 -173941073 + AT_rich Low_complexity Low_complexity 1 50 0 186 351 70 54 chrX 3033256 3033515 -173940625 - L3 LINE CR1 -828 749 487 252 0 0 0 chrX 3033795 3033823 -173940317 + (TTTTTA)n Simple_repeat Simple_repeat 2 29 0 21 0 0 0 chrX 3034741 3034762 -173939378 + AT_rich Low_complexity Low_complexity 1 21 0 296 316 129 19 chrX 3035746 3035955 -173938185 + L2 LINE L2 1238 1469 -1845 1431 244 37 55 chrX 3035955 3036463 -173937677 - MLT1D LTR MaLR 0 505 7 22 35 0 0 chrX 3037706 3037735 -173936405 + AT_rich Low_complexity Low_complexity 1 29 0 206 264 57 0 chrX 3038506 3038559 -173935581 + MIR SINE MIR 117 172 -90 1688 199 0 0 chrX 3039007 3039294 -173934846 + AluJo SINE Alu 2 288 -24 848 254 55 47 chrX 3039708 3039914 -173934226 - MLT1E LTR MaLR -2 591 381 2775 178 154 13 chrX 3039914 3040549 -173933591 - LTR8A LTR ERV1 -2 725 1 848 254 55 47 chrX 3040549 3040598 -173933542 - MLT1E LTR MaLR -212 381 334 379 329 22 0 chrX 3040659 3040796 -173933344 - MLT1E LTR MaLR -381 212 73 3030 262 103 55 chrX 3040812 3042567 -173931573 + L1MEc LINE L1 2179 4010 -2205 2284 108 0 6 chrX 3042567 3042881 -173931259 + AluSq SINE Alu 1 312 -1 3030 262 103 55 chrX 3042881 3043201 -173930939 + L1MEc LINE L1 4010 4313 -1902 2147 164 47 29 chrX 3043202 3043741 -173930399 + MLT2A2 LTR ERVL 1 554 0 1279 256 116 58 chrX 3043742 3044724 -173929416 + L1MEc LINE L1 4356 5394 -821 * 6053 126 11 14 chrX 3044716 3045647 -173928493 + THE1C-int LTR MaLR 653 1580 0 1823 169 38 22 chrX 3045647 3046013 -173928127 + THE1C LTR MaLR 1 372 -3 255 61 0 0 chrX 3046013 3046046 -173928094 + (CA)n Simple_repeat Simple_repeat 2 34 0 222 267 78 22 chrX 3046046 3046136 -173928004 - MIR SINE MIR -58 204 110 1495 90 4 37 chrX 3046160 3046404 -173927736 - L1MA8 LINE L1 -4 6287 6052 2449 111 3 14 chrX 3046464 3046832 -173927308 - THE1B LTR MaLR 0 364 1 780 184 0 25 chrX 3047663 3047949 -173926191 + GA-rich Low_complexity Low_complexity 1 278 0 629 204 6 17 chrX 3047960 3048141 -173925999 + GA-rich Low_complexity Low_complexity 2 180 0 534 126 32 11 chrX 3048928 3049023 -173925117 + MER4A LTR ERV1 2 98 -566 1628 131 14 78 chrX 3049023 3049390 -173924750 + MER4A LTR ERV1 261 662 -2 2455 62 0 0 chrX 3049663 3049980 -173924160 + AluY SINE Alu 1 317 0 2267 103 3 0 chrX 3051052 3051352 -173922788 - AluSx SINE Alu -11 301 1 3877 158 12 12 chrX 3053687 3054392 -173919748 - MER51C LTR ERV1 -17 623 1 200 225 0 0 chrX 3054703 3054743 -173919397 + MIR SINE MIR 2 41 -221 807 113 0 24 chrX 3054963 3055087 -173919053 + MER4A LTR ERV1 544 664 0 216 217 57 19 chrX 3055343 3055449 -173918691 + (TA)n Simple_repeat Simple_repeat 1 110 0 530 313 106 26 chrX 3055449 3055836 -173918304 - L1MC4a LINE L1 -1880 5928 5511 1703 176 3 23 chrX 3055931 3056233 -173917907 + AluJb SINE Alu 1 296 -16 284 165 39 0 chrX 3056269 3056322 -173917818 + (TA)n Simple_repeat Simple_repeat 1 50 -57 1924 130 55 22 chrX 3056322 3056683 -173917457 + THE1C LTR MaLR 1 373 -2 284 165 39 0 chrX 3056683 3056732 -173917408 + (TA)n Simple_repeat Simple_repeat 50 107 0 1089 211 32 7 chrX 3057060 3057345 -173916795 - MER33 DNA MER1_type -1 323 32 21 0 0 0 chrX 3057952 3057973 -173916167 + AT_rich Low_complexity Low_complexity 1 21 0 22 70 0 0 chrX 3058913 3058956 -173915184 + AT_rich Low_complexity Low_complexity 1 43 0 194 62 31 0 chrX 3059731 3059763 -173914377 + (TC)n Simple_repeat Simple_repeat 2 34 0 296 245 50 58 chrX 3060413 3060514 -173913626 - MIR SINE MIR -4 258 157 1617 147 125 9 chrX 3060514 3060841 -173913299 + MLT1A1 LTR MaLR 1 365 0 296 245 50 58 chrX 3060841 3060878 -173913262 - MIR SINE MIR -105 157 121 669 184 101 0 chrX 3061092 3061250 -173912890 - L1MA5A LINE L1 -1 6296 6123 904 189 5 16 chrX 3061351 3061541 -173912599 + AluJo SINE Alu 119 306 -6 899 226 76 13 chrX 3061589 3062018 -173912122 + MLT1D LTR MaLR 3 467 0 2282 112 0 6 chrX 3062176 3062490 -173911650 - AluSx SINE Alu 0 312 1 669 269 159 48 chrX 3062664 3062861 -173911279 - L1MD2 LINE L1 -12 6347 6173 201 39 0 0 chrX 3062861 3062887 -173911253 + (TG)n Simple_repeat Simple_repeat 2 27 0 180 0 0 0 chrX 3062888 3062908 -173911232 + (GA)n Simple_repeat Simple_repeat 2 21 0 669 269 159 48 chrX 3062908 3063080 -173911060 - L1MD2 LINE L1 -185 6174 5935 * 887 109 7 7 chrX 3063072 3063219 -173910921 + L1MA5A LINE L1 5828 5974 -323 1494 194 14 7 chrX 3063448 3063727 -173910413 + AluJo SINE Alu 1 281 -31 2801 16 0 0 chrX 3064134 3064445 -173909695 + AluYa5 SINE Alu 1 311 0 23 0 0 0 chrX 3064445 3064468 -173909672 + AT_rich Low_complexity Low_complexity 1 23 0 222 37 0 0 chrX 3064564 3064591 -173909549 + (CA)n Simple_repeat Simple_repeat 2 28 0 310 307 206 31 chrX 3064753 3065199 -173908941 + L2 LINE L2 2446 2969 -345 201 171 24 0 chrX 3065850 3065891 -173908249 + C-rich Low_complexity Low_complexity 2 43 0 359 323 48 42 chrX 3065919 3066108 -173908032 + L2 LINE L2 3123 3312 -1 2006 205 93 58 chrX 3066153 3066890 -173907250 - LTR1B LTR ERV1 0 785 29 2211 158 8 74 chrX 3067001 3067500 -173906640 - LOR1a LTR ERV1 0 497 32 1454 103 0 0 chrX 3068138 3068323 -173905817 + AluSx SINE Alu 1 185 -127 1456 170 7 0 chrX 3068323 3068600 -173905540 + L1MA4 LINE L1 5320 5598 -702 1189 150 0 12 chrX 3068604 3068777 -173905363 + FRAM SINE Alu 1 164 -12 2210 144 17 10 chrX 3068777 3069179 -173904961 + L1MA4 LINE L1 5606 6010 -290 1001 129 13 7 chrX 3069283 3069438 -173904702 - AluJo SINE Alu -76 236 81 2670 125 7 7 chrX 3069438 3069847 -173904293 + LTR9B LTR ERV1 236 644 0 2240 154 64 15 chrX 3070102 3070568 -173903572 + L1MB3 LINE L1 5659 6147 -36 2099 150 49 29 chrX 3070569 3071095 -173903045 - MLT2A2 LTR ERVL 0 554 1 4199 143 33 1 chrX 3071514 3072215 -173901925 - LTR39 LTR ERV1 -60 723 1 250 294 110 46 chrX 3072932 3073041 -173901099 - MER5A DNA MER1_type -53 136 21 821 181 6 0 chrX 3073254 3073431 -173900709 + (TCTA)n Simple_repeat Simple_repeat 3 180 0 297 130 0 0 chrX 3073431 3073477 -173900663 + (TCCA)n Simple_repeat Simple_repeat 1 46 0 1016 128 6 0 chrX 3073477 3073557 -173900583 + (TCCA)n Simple_repeat Simple_repeat 1 260 0 1016 128 6 0 chrX 3073557 3073736 -173900404 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 228 231 0 0 chrX 3073834 3073886 -173900254 + (TCCA)n Simple_repeat Simple_repeat 3 54 0 538 141 207 71 chrX 3074588 3074837 -173899303 - MER4C LTR ERV1 -20 445 169 1042 124 54 158 chrX 3074842 3075228 -173898912 - MER4A LTR ERV1 -318 346 1 2660 172 103 48 chrX 3076279 3076966 -173897174 - LTR8A LTR ERV1 0 727 3 345 364 0 0 chrX 3076997 3077126 -173897014 - MIR SINE MIR -6 256 128 540 317 6 0 chrX 3077153 3077317 -173896823 + MLT2F LTR ERVL 432 596 -67 21 36 0 0 chrX 3077562 3077590 -173896550 + AT_rich Low_complexity Low_complexity 1 28 0 3931 123 8 9 chrX 3077722 3077903 -173896237 - MER41B LTR ERV1 0 635 455 1756 157 29 32 chrX 3077903 3078247 -173895893 + MER61A LTR ERV1 1 343 0 3931 123 8 9 chrX 3078247 3078701 -173895439 - MER41B LTR ERV1 -180 455 1 2016 122 0 33 chrX 3079326 3079629 -173894511 + AluSx SINE Alu 14 306 -6 2455 68 0 13 chrX 3081102 3081413 -173892727 + AluY SINE Alu 1 307 -4 186 103 0 0 chrX 3081468 3081497 -173892643 + (TG)n Simple_repeat Simple_repeat 2 30 0 1999 187 6 3 chrX 3081504 3081868 -173892272 + MLT1A1 LTR MaLR 1 365 0 233 300 157 33 chrX 3082110 3082320 -173891820 - L2 LINE L2 -597 2717 2482 317 205 0 13 chrX 3082389 3082467 -173891673 - LTR52 LTR ERVL -340 81 5 2439 231 20 38 chrX 3082859 3083169 -173890971 + MER82 DNA MER2_type 1 315 -338 2380 165 68 4 chrX 3083169 3083636 -173890504 + LOR1a LTR ERV1 1 497 0 2439 231 20 38 chrX 3083636 3083988 -173890152 + MER82 DNA MER2_type 315 651 -2 3968 156 13 11 chrX 3084945 3085655 -173888485 - MER50 LTR ERV1 -23 711 1 2676 175 42 43 chrX 3085947 3086297 -173887843 + MER4D LTR ERV1 1 351 -552 258 32 0 0 chrX 3086297 3086328 -173887812 + (TG)n Simple_repeat Simple_repeat 1 31 0 2676 175 42 43 chrX 3086328 3086643 -173887497 + MER4D LTR ERV1 351 665 -238 1902 70 4 15 chrX 3086643 3086916 -173887224 + MER41A LTR ERV1 1 270 -284 254 190 35 0 chrX 3086916 3086974 -173887166 + LTR1B LTR ERV1 767 826 0 * 3532 169 1 29 chrX 3086974 3087252 -173886888 + LTR39 LTR ERV1 152 436 -347 1817 144 0 27 chrX 3087252 3087595 -173886545 - AluSx SINE Alu 0 335 1 3532 169 1 29 chrX 3087595 3087965 -173886175 + LTR39 LTR ERV1 436 783 0 575 255 185 8 chrX 3089719 3089978 -173884162 - MLT1F LTR MaLR 0 542 238 35 126 0 0 chrX 3090041 3090335 -173883805 + AT_rich Low_complexity Low_complexity 1 294 0 219 242 19 32 chrX 3090510 3090667 -173883473 + (TTAAA)n Simple_repeat Simple_repeat 5 159 0 43 115 0 0 chrX 3090673 3090891 -173883249 + AT_rich Low_complexity Low_complexity 1 218 0 302 266 16 38 chrX 3090962 3091146 -173882994 + (TA)n Simple_repeat Simple_repeat 1 180 0 544 186 90 42 chrX 3091146 3091227 -173882913 - L1MB4 LINE L1 -28 6152 6076 2227 161 29 0 chrX 3091227 3091606 -173882534 + MLT1B LTR MaLR 1 390 0 544 186 90 42 chrX 3091606 3091691 -173882449 - L1MB4 LINE L1 -104 6076 5978 1909 104 156 9 chrX 3091921 3092247 -173881893 - THE1C LTR MaLR -1 374 1 376 182 0 107 chrX 3092567 3092622 -173881518 - L1MB4 LINE L1 -202 5978 5941 1738 175 3 17 chrX 3092622 3092913 -173881227 - AluJo SINE Alu -25 287 1 376 182 0 107 chrX 3092913 3092978 -173881162 - L1MB4 LINE L1 -239 5941 5871 424 331 0 18 chrX 3092983 3093149 -173880991 - MLT1F LTR MaLR -378 164 2 198 150 0 0 chrX 3093188 3093228 -173880912 + (CCTA)n Simple_repeat Simple_repeat 3 42 0 2059 122 64 103 chrX 3093315 3093781 -173880359 - LTR47A LTR ERVL 0 452 5 288 312 185 0 chrX 3094469 3094658 -173879482 + L2 LINE L2 2259 2482 -832 545 129 11 0 chrX 3094853 3094946 -173879194 + G-rich Low_complexity Low_complexity 5 98 0 1568 193 3 20 chrX 3095113 3095419 -173878721 + AluJo SINE Alu 1 301 -11 46 45 0 0 chrX 3096490 3096557 -173877583 + AT_rich Low_complexity Low_complexity 1 67 0 1162 123 10 5 chrX 3096702 3096897 -173877243 + L1MA4A LINE L1 6102 6297 -6 497 238 31 21 chrX 3097166 3097359 -173876781 - L1MD3 LINE L1 0 7995 7801 186 350 15 58 chrX 3097467 3097604 -173876536 - MIR SINE MIR -131 131 1 1101 63 0 0 chrX 3098599 3098781 -173875359 + L1PA10 LINE L1 6006 6187 0 342 77 39 0 chrX 3098860 3098912 -173875228 + MLT2A2 LTR ERVL 400 453 0 21 0 0 0 chrX 3099391 3099412 -173874728 + AT_rich Low_complexity Low_complexity 1 21 0 369 0 0 0 chrX 3099527 3099568 -173874572 + (TA)n Simple_repeat Simple_repeat 1 41 0 1679 174 7 26 chrX 3100256 3100566 -173873574 + AluJo SINE Alu 2 305 -7 234 0 0 0 chrX 3100789 3100815 -173873325 + (TTG)n Simple_repeat Simple_repeat 2 27 0 208 231 0 0 chrX 3101787 3101826 -173872314 + polypurine Low_complexity Low_complexity 2 40 0 483 194 14 14 chrX 3101831 3101970 -173872170 + GA-rich Low_complexity Low_complexity 3 141 0 553 141 0 63 chrX 3101983 3102174 -173871966 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 211 253 30 0 chrX 3102196 3102295 -173871845 + GA-rich Low_complexity Low_complexity 4 105 0 * 314 115 16 0 chrX 3102285 3102346 -173871794 + (GGAGA)n Simple_repeat Simple_repeat 4 65 0 441 0 0 0 chrX 3102662 3102711 -173871429 + (TTTTA)n Simple_repeat Simple_repeat 4 52 0 328 309 0 0 chrX 3102747 3102841 -173871299 - MIR SINE MIR -8 254 161 208 191 61 41 chrX 3102841 3102988 -173871152 + (TTATG)n Simple_repeat Simple_repeat 5 154 0 1572 195 76 24 chrX 3103011 3103380 -173870760 + MLT1B LTR MaLR 3 390 0 343 333 5 22 chrX 3103425 3103550 -173870590 - MIR SINE MIR -66 142 21 2060 132 19 29 chrX 3103995 3104374 -173869766 + THE1C LTR MaLR 1 375 0 2922 187 10 84 chrX 3104795 3105187 -173868953 - L1MA7 LINE L1 -9 6282 5979 1954 160 0 3 chrX 3105187 3105499 -173868641 - AluJo SINE Alu -1 311 1 2922 187 10 84 chrX 3105499 3105912 -173868228 - L1MA7 LINE L1 -312 5979 5537 213 108 0 0 chrX 3105915 3105952 -173868188 + (CCA)n Simple_repeat Simple_repeat 1 37 0 758 164 0 0 chrX 3106768 3106890 -173867250 + AluJb SINE Alu 4 125 -187 717 163 12 6 chrX 3107523 3107683 -173866457 + GA-rich Low_complexity Low_complexity 4 164 0 226 277 15 0 chrX 3107710 3107775 -173866365 + (TA)n Simple_repeat Simple_repeat 1 66 0 454 111 14 0 chrX 3107907 3107979 -173866161 - MADE1 DNA Mariner -5 75 3 232 120 40 0 chrX 3108011 3108061 -173866079 + (TA)n Simple_repeat Simple_repeat 2 53 0 577 208 100 0 chrX 3109168 3109288 -173864852 - FLAM_A SINE Alu 0 133 2 2050 123 0 4 chrX 3110126 3110410 -173863730 + AluSx SINE Alu 1 283 -29 262 0 0 0 chrX 3110410 3110439 -173863701 + (CAAAA)n Simple_repeat Simple_repeat 2 125 0 3852 104 15 74 chrX 3110439 3111008 -173863132 + L1PA13 LINE L1 5524 6048 -115 2570 40 0 0 chrX 3111008 3111304 -173862836 + AluY SINE Alu 1 296 -15 3852 104 15 74 chrX 3111304 3111409 -173862731 + L1PA13 LINE L1 6048 6158 -5 268 253 82 55 chrX 3111665 3111811 -173862329 + MLT1J LTR MaLR 102 251 -260 313 253 11 22 chrX 3113093 3113184 -173860956 - L1MC4 LINE L1 -1339 6703 6614 415 191 0 35 chrX 3113246 3113361 -173860779 + (CATATA)n Simple_repeat Simple_repeat 2 112 0 180 176 0 0 chrX 3113389 3113423 -173860717 + (TATATG)n Simple_repeat Simple_repeat 2 35 0 273 265 102 48 chrX 3114005 3114171 -173859969 + HAL1 LINE L1 5 179 -2328 408 205 33 33 chrX 3114412 3114534 -173859606 - L1MA4A LINE L1 -181 6122 6001 360 321 131 30 chrX 3114790 3115027 -173859113 + HAL1 LINE L1 637 897 -1610 693 285 56 3 chrX 3115075 3115359 -173858781 + Charlie1b DNA MER1_type 56 354 -169 2689 80 17 8 chrX 3115568 3115929 -173858211 - THE1B LTR MaLR 0 364 1 232 253 127 0 chrX 3116062 3116141 -173857999 + L1ME4a LINE L1 5937 6025 -96 752 160 35 7 chrX 3116824 3116968 -173857172 - Tigger3b DNA MER2_type -808 423 276 507 223 0 29 chrX 3116970 3117073 -173857067 - Tigger3b DNA MER2_type -1131 100 1 324 194 19 29 chrX 3117293 3117396 -173856744 + (TA)n Simple_repeat Simple_repeat 1 102 0 249 231 0 23 chrX 3117407 3117537 -173856603 + (TA)n Simple_repeat Simple_repeat 2 128 0 751 166 24 11 chrX 3117538 3117798 -173856342 + (TCTA)n Simple_repeat Simple_repeat 1 263 0 491 321 121 25 chrX 3118883 3119247 -173854893 + LTR16A1 LTR ERVL 49 447 -10 1782 168 0 32 chrX 3120824 3121133 -173853007 - AluJb SINE Alu -13 299 1 871 146 0 7 chrX 3121499 3121643 -173852497 + FLAM_C SINE Alu 1 143 0 40 67 0 0 chrX 3122120 3122195 -173851945 + AT_rich Low_complexity Low_complexity 1 75 0 1741 166 0 3 chrX 3123521 3123864 -173850276 - AluSx SINE Alu 0 342 1 956 120 0 0 chrX 3123864 3123997 -173850143 - AluSq/x SINE Alu -178 135 3 393 118 59 0 chrX 3124725 3124793 -173849347 + L1P5 LINE L1 5708 5779 -377 1452 186 14 25 chrX 3126444 3126729 -173847411 - AluJo SINE Alu -30 282 1 552 126 35 14 chrX 3127083 3127226 -173846914 + (TCTA)n Simple_repeat Simple_repeat 1 146 0 247 234 24 6 chrX 3127236 3127403 -173846737 + (TA)n Simple_repeat Simple_repeat 2 171 0 243 294 138 56 chrX 3127495 3127726 -173846414 - MIR SINE MIR -2 260 11 21 0 0 0 chrX 3128011 3128032 -173846108 + AT_rich Low_complexity Low_complexity 1 21 0 207 69 0 0 chrX 3129085 3129114 -173845026 + (GA)n Simple_repeat Simple_repeat 1 29 0 781 292 70 107 chrX 3129505 3129888 -173844252 + L1ME1 LINE L1 62 413 -5983 2607 97 8 3 chrX 3129888 3130249 -173843891 - THE1B LTR MaLR -1 363 1 781 292 70 107 chrX 3130249 3130509 -173843631 + L1ME1 LINE L1 413 681 -5715 1998 103 33 0 chrX 3130536 3130809 -173843331 - AluSx SINE Alu -30 282 1 410 255 0 0 chrX 3130839 3130941 -173843199 + L1ME1 LINE L1 693 794 -5602 2001 253 69 35 chrX 3131017 3131531 -173842609 + L1ME1 LINE L1 4357 4852 -1383 369 0 0 0 chrX 3131531 3131572 -173842568 + (CA)n Simple_repeat Simple_repeat 2 42 0 2001 253 69 35 chrX 3131572 3132329 -173841811 + L1ME1 LINE L1 4852 5673 -562 * 5437 70 28 8 chrX 3132326 3133080 -173841060 - L1P LINE L1 -2023 4123 3355 * 6019 95 3 9 chrX 3133079 3133963 -173840177 - L1P LINE L1 -3016 3130 2252 9052 73 7 0 chrX 3133963 3135978 -173838162 + L1PA7 LINE L1 4115 6152 -2 1005 268 26 60 chrX 3135978 3136479 -173837661 + L1ME1 LINE L1 5664 6147 -88 395 229 46 78 chrX 3136410 3136563 -173837577 + L1MA10 LINE L1 6240 6387 -16 * 21 57 0 0 chrX 3136709 3136744 -173837396 + AT_rich Low_complexity Low_complexity 1 35 0 4419 126 18 18 chrX 3137963 3138685 -173835455 + L1PA16 LINE L1 5444 6165 -1 2514 99 0 50 chrX 3139454 3139837 -173834303 - THE1B LTR MaLR 0 364 1 1235 76 6 0 chrX 3140304 3140475 -173833665 - L1PA5 LINE L1 -1 6153 5982 216 0 0 0 chrX 3140787 3140811 -173833329 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 22 0 0 0 chrX 3141870 3141892 -173832248 + AT_rich Low_complexity Low_complexity 1 22 0 297 183 0 0 chrX 3142185 3142245 -173831895 + GA-rich Low_complexity Low_complexity 1 60 0 1962 153 0 7 chrX 3142291 3142599 -173831541 + AluJb SINE Alu 1 306 -6 1704 163 3 7 chrX 3143035 3143318 -173830822 - AluJo SINE Alu -19 293 12 894 218 35 0 chrX 3144258 3144460 -173829680 + MER3 DNA MER1_type 1 209 0 408 277 168 7 chrX 3144480 3144617 -173829523 + MER5A DNA MER1_type 30 188 -1 2274 107 0 3 chrX 3145589 3145915 -173828225 + AluSx SINE Alu 12 336 0 1169 217 19 139 chrX 3146226 3146516 -173827624 - MLT1C LTR MaLR -42 425 214 4656 112 6 17 chrX 3146516 3147215 -173826925 - LTR8 LTR ERV1 0 691 1 1169 217 19 139 chrX 3147215 3147407 -173826733 - MLT1C LTR MaLR -253 214 1 24 53 0 0 chrX 3149684 3149722 -173824418 + AT_rich Low_complexity Low_complexity 1 38 0 1999 178 72 2 chrX 3149785 3150185 -173823955 - MSTA LTR MaLR 0 428 1 1017 110 0 7 chrX 3150185 3150340 -173823800 - MSTA-int LTR MaLR 0 1651 1498 374 364 78 33 chrX 3150387 3150903 -173823237 - ERVL LTR ERVL -648 5116 4578 2567 217 19 15 chrX 3151330 3151856 -173822284 + MER74A LTR ERVL 31 558 0 1765 166 3 14 chrX 3151951 3152246 -173821894 + AluJb SINE Alu 1 292 -20 1882 133 0 11 chrX 3152497 3152775 -173821365 + AluSx SINE Alu 1 275 -37 2239 149 31 24 chrX 3153461 3153844 -173820296 + LTR26 LTR ERV1 218 603 0 285 140 0 0 chrX 3154242 3154299 -173819841 + (TC)n Simple_repeat Simple_repeat 2 58 0 285 29 0 0 chrX 3154299 3154333 -173819807 + (CA)n Simple_repeat Simple_repeat 1 34 0 264 59 0 0 chrX 3154333 3154367 -173819773 + (GA)n Simple_repeat Simple_repeat 1 34 0 25 51 0 0 chrX 3155476 3155515 -173818625 + AT_rich Low_complexity Low_complexity 1 39 0 240 242 0 0 chrX 3156166 3156228 -173817912 - L1M4 LINE L1 -2393 3753 3692 1352 6 17 17 chrX 3156232 3156410 -173817730 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 1848 155 10 3 chrX 3156425 3156716 -173817424 - AluJb SINE Alu -19 293 1 422 310 7 35 chrX 3156864 3157006 -173817134 - MIR SINE MIR -89 173 36 299 293 0 57 chrX 3157401 3157524 -173816616 + L2 LINE L2 1799 1914 -1400 1412 139 9 0 chrX 3157573 3157803 -173816337 - MLT1B LTR MaLR 0 390 159 2087 172 6 10 chrX 3157804 3158194 -173815946 - MLT1B LTR MaLR 0 396 4 4179 74 26 0 chrX 3158227 3158792 -173815348 + LTR19B LTR ERV1 1 580 0 183 328 52 43 chrX 3158823 3158939 -173815201 - L2 LINE L2 -18 3254 3138 1807 153 45 29 chrX 3159111 3159238 -173814902 + L1MB3 LINE L1 5796 5919 -264 2357 194 31 82 chrX 3159238 3159883 -173814257 - LTR9 LTR ERV1 0 612 1 1807 153 45 29 chrX 3159883 3160133 -173814007 + L1MB3 LINE L1 5919 6179 -4 186 71 0 0 chrX 3160174 3160202 -173813938 + (CAA)n Simple_repeat Simple_repeat 3 30 0 231 324 59 0 chrX 3161423 3161491 -173812649 + MIR SINE MIR 24 95 -167 1503 134 20 24 chrX 3162093 3162339 -173811801 + AluJb SINE Alu 36 280 -32 689 221 0 6 chrX 3162344 3162516 -173811624 + GA-rich Low_complexity Low_complexity 1 171 0 261 0 0 0 chrX 3162517 3162546 -173811594 + (GAAA)n Simple_repeat Simple_repeat 1 29 0 186 344 74 25 chrX 3163015 3163178 -173810962 + MIR3 SINE MIR 37 207 -1 239 283 33 22 chrX 3163999 3164091 -173810049 - MIR SINE MIR -122 140 48 1449 194 4 0 chrX 3164800 3165047 -173809093 + AluJo SINE Alu 39 286 -26 438 140 30 0 chrX 3165084 3165184 -173808956 + (TA)n Simple_repeat Simple_repeat 1 103 0 390 159 0 0 chrX 3165209 3165278 -173808862 + (TG)n Simple_repeat Simple_repeat 2 70 0 414 0 0 0 chrX 3165407 3165453 -173808687 + (TA)n Simple_repeat Simple_repeat 2 47 0 519 209 6 12 chrX 3166249 3166412 -173807728 + CT-rich Low_complexity Low_complexity 1 162 0 269 185 0 12 chrX 3166427 3166508 -173807632 + CT-rich Low_complexity Low_complexity 2 81 0 680 75 0 0 chrX 3168007 3168101 -173806039 - AluY SINE Alu -13 298 205 243 174 76 65 chrX 3168809 3168901 -173805239 + L1M4 LINE L1 3375 3467 -2679 333 222 42 14 chrX 3169362 3169506 -173804634 + (TA)n Simple_repeat Simple_repeat 2 149 0 283 220 71 64 chrX 3169569 3169710 -173804430 + L1M4 LINE L1 4123 4264 -1882 24 32 0 0 chrX 3169745 3169776 -173804364 + AT_rich Low_complexity Low_complexity 1 31 0 2059 145 0 0 chrX 3169925 3170229 -173803911 + AluSx SINE Alu 1 304 -8 727 153 0 0 chrX 3170450 3170568 -173803572 - FLAM_C SINE Alu -15 118 1 353 290 85 82 chrX 3170779 3171179 -173802961 + L1MB3 LINE L1 4010 4410 -1736 335 167 103 0 chrX 3171221 3171299 -173802841 + L1MB3 LINE L1 4502 4587 -1559 387 125 0 0 chrX 3171302 3171374 -173802766 + (TG)n Simple_repeat Simple_repeat 2 73 0 1813 177 57 0 chrX 3171592 3171981 -173802159 + L1MB3 LINE L1 5770 6180 -3 1064 98 6 0 chrX 3172431 3172595 -173801545 + (GGAA)n Simple_repeat Simple_repeat 3 167 0 33 0 0 0 chrX 3172688 3172721 -173801419 + AT_rich Low_complexity Low_complexity 1 33 0 406 185 39 0 chrX 3173473 3173603 -173800537 + CT-rich Low_complexity Low_complexity 1 135 0 21 0 0 0 chrX 3174017 3174038 -173800102 + AT_rich Low_complexity Low_complexity 1 21 0 1135 183 0 29 chrX 3174038 3174246 -173799894 - AluJo SINE Alu -24 288 87 22 0 0 0 chrX 3174342 3174364 -173799776 + AT_rich Low_complexity Low_complexity 1 22 0 227 31 31 0 chrX 3174448 3174480 -173799660 + (CAAAAA)n Simple_repeat Simple_repeat 4 36 0 204 250 0 0 chrX 3174676 3174720 -173799420 - MIR SINE MIR 0 262 219 606 182 0 0 chrX 3175083 3175193 -173798947 - L1MA9 LINE L1 -33 6279 6170 1562 154 66 22 chrX 3175378 3175650 -173798490 + AluJb SINE Alu 1 284 -28 311 208 13 0 chrX 3175688 3175765 -173798375 + L1MA7 LINE L1 6210 6287 -4 37 0 0 0 chrX 3175766 3175803 -173798337 + AT_rich Low_complexity Low_complexity 1 37 0 2121 221 0 43 chrX 3176008 3176496 -173797644 + MLT1C LTR MaLR 1 467 0 2726 179 77 11 chrX 3176866 3177425 -173796715 + L1MA3 LINE L1 5545 6140 -165 2851 86 64 24 chrX 3177433 3177853 -173796287 + MLT2A1 LTR ERVL 1 437 -7 765 170 0 25 chrX 3177890 3178049 -173796091 + L1MA3 LINE L1 6151 6305 0 6602 55 2 28 chrX 3178159 3179031 -173795109 - L1PA7 LINE L1 -6 6148 5299 1788 162 18 26 chrX 3179158 3179498 -173794642 + THE1C LTR MaLR 1 337 -38 1097 143 0 0 chrX 3180311 3180500 -173793640 - L1MA3 LINE L1 -3 6302 6114 401 176 0 0 chrX 3180501 3180575 -173793565 + L1MA3 LINE L1 6037 6110 -195 24 0 0 0 chrX 3181657 3181681 -173792459 + AT_rich Low_complexity Low_complexity 1 24 0 34 24 0 0 chrX 3183049 3183090 -173791050 + AT_rich Low_complexity Low_complexity 1 41 0 21 0 0 0 chrX 3183355 3183376 -173790764 + AT_rich Low_complexity Low_complexity 1 21 0 256 24 24 24 chrX 3183436 3183478 -173790662 + (TTTTTA)n Simple_repeat Simple_repeat 1 42 0 14239 25 3 0 chrX 3183478 3185929 -173788211 - L1PA3 LINE L1 -2 6153 3697 8472 31 0 1 chrX 3185930 3186973 -173787167 + L1PA3 LINE L1 2650 3691 -2455 262 284 0 0 chrX 3187821 3187916 -173786224 - L1MB8 LINE L1 -2 6176 6082 1098 242 100 24 chrX 3191522 3191955 -173782185 - MLT1C LTR MaLR 0 467 1 310 363 67 9 chrX 3191955 3192178 -173781962 + L1MC5 LINE L1 7666 7901 -60 21 0 0 0 chrX 3192206 3192227 -173781913 + AT_rich Low_complexity Low_complexity 1 21 0 601 153 19 10 chrX 3192229 3192328 -173781812 - L1MA7 LINE L1 -497 5806 5705 2682 136 20 36 chrX 3192328 3192826 -173781314 + L1MA7 LINE L1 5800 6290 -1 601 153 19 10 chrX 3192826 3192842 -173781298 - L1MB8 LINE L1 -598 5705 5691 306 0 0 0 chrX 3192952 3192986 -173781154 + (CA)n Simple_repeat Simple_repeat 2 35 0 621 229 10 47 chrX 3192994 3193186 -173780954 + L1MB5 LINE L1 5980 6164 -10 24 0 0 0 chrX 3193467 3193491 -173780649 + AT_rich Low_complexity Low_complexity 1 24 0 3759 90 14 31 chrX 3193491 3194080 -173780060 - L1MA1 LINE L1 -3 6299 5721 1006 87 67 0 chrX 3194090 3194239 -173779901 - L1MA1 LINE L1 -696 5606 5448 1816 152 16 70 chrX 3194558 3194932 -173779208 - MLT1A1 LTR MaLR 0 365 12 910 229 161 0 chrX 3194939 3195219 -173778921 + MLT1D LTR MaLR 181 505 0 333 323 123 13 chrX 3195954 3196109 -173778031 - MIR SINE MIR -88 174 3 2254 120 22 27 chrX 3196151 3196517 -173777623 - THE1B LTR MaLR 0 364 1 2178 117 10 67 chrX 3196888 3197274 -173776866 + THE1B LTR MaLR 1 364 0 246 62 0 0 chrX 3197392 3197424 -173776716 + (CA)n Simple_repeat Simple_repeat 1 32 0 1517 197 55 0 chrX 3197805 3198094 -173776046 + AluJb SINE Alu 1 305 -7 315 313 172 0 chrX 3198126 3198260 -173775880 - MER5A DNA MER1_type -1 188 32 1361 228 81 29 chrX 3198261 3198705 -173775435 + MLT1C LTR MaLR 1 467 0 1793 219 77 11 chrX 3199860 3200142 -173773998 + MLT1D LTR MaLR 22 309 -158 234 0 0 0 chrX 3200142 3200168 -173773972 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 1793 219 77 11 chrX 3200168 3200339 -173773801 + MLT1D LTR MaLR 309 467 0 26 30 0 0 chrX 3201619 3201652 -173772488 + AT_rich Low_complexity Low_complexity 1 33 0 257 237 31 10 chrX 3201699 3201796 -173772344 + (TA)n Simple_repeat Simple_repeat 2 100 0 401 240 91 32 chrX 3201899 3202053 -173772087 - MIR SINE MIR -71 191 29 286 301 65 32 chrX 3202099 3202167 -173771973 + MER5A DNA MER1_type 63 138 -51 2160 55 0 0 chrX 3202167 3202439 -173771701 - L1PA6 LINE L1 -8 6146 5875 286 301 65 32 chrX 3202439 3202493 -173771647 + MER5A DNA MER1_type 138 189 0 1052 234 76 45 chrX 3202848 3203245 -173770895 - MLT1C LTR MaLR 0 467 59 239 95 48 0 chrX 3203254 3203296 -173770844 + (TATG)n Simple_repeat Simple_repeat 2 45 0 637 308 39 4 chrX 3204986 3205220 -173768920 + MIR SINE MIR 18 259 -3 219 215 0 31 chrX 3205517 3205544 -173768596 + (TA)n Simple_repeat Simple_repeat 2 28 -36 2235 85 10 14 chrX 3205544 3205675 -173768465 + AluSx SINE Alu 3 133 -179 2532 57 0 0 chrX 3205675 3205976 -173768164 + AluY SINE Alu 1 301 -10 2235 85 10 14 chrX 3205976 3206138 -173768002 + AluSx SINE Alu 133 295 -17 219 215 0 31 chrX 3206138 3206175 -173767965 + (TA)n Simple_repeat Simple_repeat 28 64 0 24 0 0 0 chrX 3206277 3206301 -173767839 + AT_rich Low_complexity Low_complexity 1 24 0 1974 167 12 6 chrX 3207128 3207469 -173766671 - MER61A LTR ERV1 0 343 1 517 215 35 7 chrX 3207911 3208063 -173766077 - MER58B DNA MER1_type -25 316 33 1121 189 0 32 chrX 3209018 3209235 -173764905 + AluJo SINE Alu 1 210 -102 414 171 98 0 chrX 3209263 3209345 -173764795 + AluJo SINE Alu 192 281 -31 1313 66 0 11 chrX 3209352 3209534 -173764606 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 231 36 0 0 chrX 3209534 3209562 -173764578 + (GGAA)n Simple_repeat Simple_repeat 1 28 0 1082 126 0 11 chrX 3209564 3209746 -173764394 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 1837 153 10 7 chrX 3209751 3210051 -173764089 + AluSx SINE Alu 1 301 -11 1371 236 159 14 chrX 3210356 3210797 -173763343 + MLT1D LTR MaLR 1 505 0 270 216 0 0 chrX 3211137 3211153 -173762987 + AluSp SINE Alu 120 135 -168 1565 187 32 7 chrX 3211153 3211436 -173762704 + AluJo SINE Alu 1 290 -22 28 29 0 0 chrX 3211436 3211471 -173762669 + AT_rich Low_complexity Low_complexity 1 35 0 1334 238 116 7 chrX 3211720 3212153 -173761987 + MLT2B1 LTR ERVL 1 480 -40 2016 146 0 10 chrX 3212210 3212511 -173761629 + AluSx SINE Alu 1 298 -14 1082 248 75 9 chrX 3212517 3212839 -173761301 - MER2 DNA MER2_type 0 344 2 306 253 6 22 chrX 3213006 3213188 -173760952 + (TA)n Simple_repeat Simple_repeat 2 180 0 200 318 0 0 chrX 3213191 3213257 -173760883 + (CATA)n Simple_repeat Simple_repeat 1 66 0 321 26 0 0 chrX 3213257 3213295 -173760845 + (TG)n Simple_repeat Simple_repeat 1 38 0 1263 39 0 6 chrX 3213763 3213919 -173760221 - L1PA4 LINE L1 -8 6147 5993 692 194 61 0 chrX 3214709 3214874 -173759266 - MER53 DNA DNA -3 186 12 675 240 23 73 chrX 3215156 3215255 -173758885 - L1M4 LINE L1 -2659 3487 3385 3727 126 0 13 chrX 3215255 3215789 -173758351 - MER1A DNA MER1_type 0 527 1 675 240 23 73 chrX 3215789 3216018 -173758122 - L1M4 LINE L1 -2761 3385 3174 23 33 0 0 chrX 3216319 3216349 -173757791 + AT_rich Low_complexity Low_complexity 1 30 0 3738 152 3 0 chrX 3216375 3216979 -173757161 + L1PA15 LINE L1 5560 6165 0 978 132 0 0 chrX 3217237 3217421 -173756719 + L1PB3 LINE L1 6006 6189 0 4292 138 25 4 chrX 3219118 3219848 -173754292 + L1MA4A LINE L1 5555 6299 -4 2457 88 70 3 chrX 3220394 3220735 -173753405 - THE1B LTR MaLR 0 364 1 358 250 0 0 chrX 3222384 3222464 -173751676 + MLT1E1 LTR MaLR 51 130 -463 965 248 37 25 chrX 3222591 3222887 -173751253 + MLT1E1 LTR MaLR 288 654 0 21 0 0 0 chrX 3223128 3223149 -173750991 + AT_rich Low_complexity Low_complexity 1 21 0 1151 102 11 0 chrX 3223447 3223623 -173750517 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 440 190 0 10 chrX 3223628 3223728 -173750412 + GA-rich Low_complexity Low_complexity 4 102 0 1773 153 52 0 chrX 3223803 3224091 -173750049 + AluSx SINE Alu 3 305 -7 22 0 0 0 chrX 3224263 3224285 -173749855 + AT_rich Low_complexity Low_complexity 1 22 0 1672 194 75 75 chrX 3224349 3224869 -173749271 + MLT2B1 LTR ERVL 1 520 0 1159 257 39 41 chrX 3225219 3225557 -173748583 - MLT1G LTR MaLR -11 579 243 308 328 60 40 chrX 3225817 3226018 -173748122 - L1M4c LINE L1 -4735 1649 1445 23 0 0 0 chrX 3226321 3226344 -173747796 + AT_rich Low_complexity Low_complexity 1 23 0 23 68 0 0 chrX 3227155 3227199 -173746941 + AT_rich Low_complexity Low_complexity 1 44 0 2760 88 0 11 chrX 3227822 3228199 -173745941 - THE1C LTR MaLR 0 375 3 282 289 0 7 chrX 3228256 3228395 -173745745 + CT-rich Low_complexity Low_complexity 1 137 0 * 934 137 6 6 chrX 3228389 3228564 -173745576 + (TTCC)n Simple_repeat Simple_repeat 3 177 0 2202 110 0 3 chrX 3228963 3229273 -173744867 - AluSq SINE Alu -4 309 1 30 0 0 0 chrX 3229655 3229685 -173744455 + AT_rich Low_complexity Low_complexity 1 30 0 2434 161 5 31 chrX 3230906 3231352 -173742788 + Tigger2a DNA MER2_type 1 434 0 2481 101 28 6 chrX 3231761 3232117 -173742023 - THE1B LTR MaLR 0 364 1 193 392 13 0 chrX 3232178 3232257 -173741883 - L2 LINE L2 -27 3286 3207 203 175 0 0 chrX 3232645 3232685 -173741455 + T-rich Low_complexity Low_complexity 1 40 0 1832 246 109 42 chrX 3232996 3233359 -173740781 + L1MC/D LINE L1 1174 1511 -4915 3374 81 0 62 chrX 3233359 3233503 -173740637 + L1PB1 LINE L1 5665 5816 -335 183 42 0 0 chrX 3233503 3233527 -173740613 + (CA)n Simple_repeat Simple_repeat 2 25 0 3374 81 0 62 chrX 3233527 3233899 -173740241 + L1PB1 LINE L1 5816 6149 -2 1832 246 109 42 chrX 3233899 3233923 -173740217 + L1MC/D LINE L1 1511 1532 -4894 1638 133 4 0 chrX 3233923 3234156 -173739984 + AluSq SINE Alu 1 234 -79 1832 246 109 42 chrX 3234156 3234247 -173739893 + L1MC/D LINE L1 1532 1615 -4811 12334 24 0 0 chrX 3234247 3236465 -173737675 + L1PA3 LINE L1 3935 6152 -3 1832 246 109 42 chrX 3236465 3237080 -173737060 + L1MC/D LINE L1 1615 2343 -4083 1778 281 42 81 chrX 3237096 3237475 -173736665 + L1MC/D LINE L1 4070 4462 -1964 2408 53 0 0 chrX 3237475 3237781 -173736359 + AluY SINE Alu 1 306 0 1778 281 42 81 chrX 3237781 3238743 -173735397 + L1MC/D LINE L1 4462 5360 -1066 253 62 62 21 chrX 3238874 3238922 -173735218 - L1MD3 LINE L1 -1165 6830 6781 338 252 0 44 chrX 3238970 3239105 -173735035 - L1M4 LINE L1 -1819 4327 4199 189 195 0 0 chrX 3239123 3239164 -173734976 + (CATA)n Simple_repeat Simple_repeat 4 44 0 227 132 0 0 chrX 3239169 3239207 -173734933 - L1MA9 LINE L1 -82 6230 6193 1837 203 45 25 chrX 3239211 3239793 -173734347 + L1MC/D LINE L1 5386 5983 -743 2543 162 7 4 chrX 3240740 3241196 -173732944 + L1PA16 LINE L1 5710 6166 0 225 183 33 33 chrX 3241794 3241854 -173732286 + GA-rich Low_complexity Low_complexity 4 63 0 252 86 0 0 chrX 3241940 3241975 -173732165 + (T)n Simple_repeat Simple_repeat 1 35 0 1845 74 4 0 chrX 3241986 3242215 -173731925 - AluSp SINE Alu -83 230 1 38 75 0 0 chrX 3242497 3242577 -173731563 + AT_rich Low_complexity Low_complexity 1 80 0 352 222 35 23 chrX 3242582 3242753 -173731387 + (TA)n Simple_repeat Simple_repeat 1 173 0 242 214 38 10 chrX 3242821 3243118 -173731022 + (TA)n Simple_repeat Simple_repeat 1 305 0 330 153 0 0 chrX 3244869 3244928 -173729212 + GA-rich Low_complexity Low_complexity 2 60 0 613 285 29 37 chrX 3244953 3245195 -173728945 - LTR16A1 LTR ERVL 0 457 218 369 263 60 8 chrX 3245334 3245467 -173728673 - LTR16A1 LTR ERVL -100 357 218 477 151 0 0 chrX 3245467 3245553 -173728587 + GA-rich Low_complexity Low_complexity 2 87 0 421 194 68 29 chrX 3245638 3245723 -173728417 + MER20 DNA MER1_type 7 95 -124 1975 149 26 29 chrX 3245723 3246106 -173728034 - LTR8 LTR ERV1 0 691 310 1584 181 6 40 chrX 3246175 3246501 -173727639 - LTR8 LTR ERV1 -376 315 1 462 250 17 8 chrX 3246501 3246621 -173727519 + MER20 DNA MER1_type 95 215 -4 325 316 0 34 chrX 3246635 3246752 -173727388 - LTR16A1 LTR ERVL -342 115 3 6345 47 0 0 chrX 3246828 3247601 -173726539 - L1PA5 LINE L1 0 6154 5382 1808 144 115 11 chrX 3247637 3248042 -173726098 - MER84 LTR ERVI -2 505 1 22 0 0 0 chrX 3248262 3248284 -173725856 + AT_rich Low_complexity Low_complexity 1 22 0 1512 205 98 8 chrX 3249091 3249447 -173724693 + MLT2C1 LTR ERVL 8 395 -2 211 200 16 54 chrX 3249746 3249931 -173724209 + (TCTA)n Simple_repeat Simple_repeat 1 178 0 231 258 0 15 chrX 3249938 3250004 -173724136 + (TCCA)n Simple_repeat Simple_repeat 1 65 0 568 58 58 29 chrX 3250007 3250146 -173723994 + (TCTA)n Simple_repeat Simple_repeat 2 144 0 244 287 149 35 chrX 3250511 3250685 -173723455 - L1MC/D LINE L1 -2172 5636 5443 1914 180 20 9 chrX 3250837 3251181 -173722959 + MER7A DNA MER2_type 1 346 0 351 0 0 0 chrX 3251373 3251412 -173722728 + (TG)n Simple_repeat Simple_repeat 1 39 0 231 61 0 0 chrX 3251412 3251445 -173722695 + (GA)n Simple_repeat Simple_repeat 2 34 0 378 319 70 75 chrX 3251652 3252264 -173721876 - HAL1 LINE L1 -1051 1456 848 320 109 0 18 chrX 3252327 3252382 -173721758 + (TCC)n Simple_repeat Simple_repeat 3 56 0 237 224 0 0 chrX 3252383 3252432 -173721708 + CT-rich Low_complexity Low_complexity 2 50 0 566 135 34 14 chrX 3252525 3252673 -173721467 + CT-rich Low_complexity Low_complexity 1 151 0 189 226 36 0 chrX 3252687 3252771 -173721369 + CT-rich Low_complexity Low_complexity 6 92 0 238 257 38 87 chrX 3253977 3254160 -173719980 - MIR SINE MIR -17 245 72 1804 130 0 50 chrX 3254923 3255222 -173718918 - AluJb SINE Alu -26 286 3 506 302 14 0 chrX 3255227 3255366 -173718774 - MER5B DNA MER1_type -31 147 7 289 173 71 16 chrX 3255890 3256017 -173718123 + (TA)n Simple_repeat Simple_repeat 1 134 0 2421 193 38 24 chrX 3256049 3256583 -173717557 - L1MB4 LINE L1 -40 6140 5600 205 305 46 30 chrX 3256636 3256767 -173717373 - MIR SINE MIR -127 135 3 706 312 20 8 chrX 3257170 3257417 -173716723 + MIR SINE MIR 12 261 -1 343 237 0 0 chrX 3257588 3257664 -173716476 + MLT1F1 LTR MaLR 84 159 -408 1633 170 0 14 chrX 3257680 3257962 -173716178 - AluJo SINE Alu -9 303 26 233 239 0 41 chrX 3258396 3258464 -173715676 - MIR SINE MIR -88 120 61 2426 86 0 0 chrX 3258469 3258771 -173715369 - AluSx SINE Alu -9 303 2 314 305 26 20 chrX 3260178 3260329 -173713811 - L1MC4 LINE L1 -975 7067 6916 556 276 35 44 chrX 3260350 3260665 -173713475 + L1MC5 LINE L1 7087 7398 -563 4217 154 18 11 chrX 3260673 3261382 -173712758 + MER50 LTR ERV1 2 715 -19 292 280 6 12 chrX 3261590 3261758 -173712382 + GA-rich Low_complexity Low_complexity 3 169 0 228 310 0 0 chrX 3262318 3262376 -173711764 + MIR SINE MIR 11 68 -194 271 234 13 26 chrX 3262435 3262512 -173711628 + MIR SINE MIR 174 249 -13 391 231 12 89 chrX 3262637 3262806 -173711334 + MIR SINE MIR 94 249 -13 734 331 33 19 chrX 3263155 3263548 -173710592 - LTR16A LTR ERVL 0 457 52 25 0 0 0 chrX 3264027 3264052 -173710088 + AT_rich Low_complexity Low_complexity 1 25 0 836 178 51 47 chrX 3264198 3264412 -173709728 + AluJo SINE Alu 85 299 -13 228 227 13 53 chrX 3264457 3264532 -173709608 - L1ME4a LINE L1 -100 6021 5950 22 0 0 0 chrX 3264539 3264561 -173709579 + AT_rich Low_complexity Low_complexity 1 22 0 315 0 0 0 chrX 3265343 3265378 -173708762 + (CA)n Simple_repeat Simple_repeat 2 36 0 215 149 0 21 chrX 3266591 3266638 -173707502 + (TAGA)n Simple_repeat Simple_repeat 1 46 0 335 233 0 7 chrX 3266679 3266825 -173707315 + (TA)n Simple_repeat Simple_repeat 1 145 0 276 30 0 0 chrX 3266825 3266858 -173707282 + (GA)n Simple_repeat Simple_repeat 2 34 0 217 338 0 0 chrX 3267573 3267641 -173706499 + MIR3 SINE MIR 113 180 -28 192 77 0 0 chrX 3270995 3271021 -173703119 + (TG)n Simple_repeat Simple_repeat 2 27 0 1485 176 10 60 chrX 3271021 3271322 -173702818 - AluJo SINE Alu -26 286 1 333 309 19 37 chrX 3271871 3272033 -173702107 + MER3 DNA MER1_type 17 128 -81 221 318 0 0 chrX 3272059 3272125 -173702015 + (CATATA)n Simple_repeat Simple_repeat 3 68 0 206 336 10 0 chrX 3273337 3273441 -173700699 + (TA)n Simple_repeat Simple_repeat 1 105 0 207 0 0 0 chrX 3273441 3273464 -173700676 + (CA)n Simple_repeat Simple_repeat 2 24 0 1620 191 19 3 chrX 3273472 3273786 -173700354 - MER2 DNA MER2_type -25 320 2 304 141 18 61 chrX 3273791 3273954 -173700186 + (TA)n Simple_repeat Simple_repeat 1 156 0 193 130 15 84 chrX 3273972 3274103 -173700037 + (TA)n Simple_repeat Simple_repeat 1 122 0 312 243 23 34 chrX 3274122 3274143 -173699997 + (TA)n Simple_repeat Simple_repeat 1 21 -154 1799 144 3 89 chrX 3274143 3274469 -173699671 + AluSx SINE Alu 1 298 -14 312 243 23 34 chrX 3274469 3274624 -173699516 + (TA)n Simple_repeat Simple_repeat 21 175 0 282 224 0 0 chrX 3274713 3274771 -173699369 + L1MCc LINE L1 -540 4294966813 -6347 276 348 105 20 chrX 3275495 3275846 -173698294 + L1MCc LINE L1 597 977 -4887 41 48 0 0 chrX 3275857 3275919 -173698221 + AT_rich Low_complexity Low_complexity 1 62 0 263 299 82 42 chrX 3276028 3276456 -173697684 + L1MCc LINE L1 1249 1748 -4815 479 261 144 39 chrX 3276490 3276823 -173697317 + L1MCc LINE L1 2696 3063 -3319 225 300 0 12 chrX 3276879 3276959 -173697181 + GA-rich Low_complexity Low_complexity 1 79 0 27 29 0 0 chrX 3276962 3276996 -173697144 + AT_rich Low_complexity Low_complexity 1 34 0 886 249 75 34 chrX 3277055 3277532 -173696608 + L1ME3 LINE L1 5665 6161 -1 349 101 62 23 chrX 3278195 3278324 -173695816 + (TA)n Simple_repeat Simple_repeat 1 134 0 800 274 19 63 chrX 3279518 3279897 -173694243 - L1ME2 LINE L1 -11 6153 5792 2342 75 6 25 chrX 3280029 3280347 -173693793 - AluSx SINE Alu 0 312 1 1866 109 60 0 chrX 3281349 3281661 -173692479 - AluSx SINE Alu 0 328 1 195 222 0 0 chrX 3282137 3282182 -173691958 + (CA)n Simple_repeat Simple_repeat 2 46 0 29 0 0 0 chrX 3282243 3282272 -173691868 + AT_rich Low_complexity Low_complexity 1 29 0 2333 98 131 6 chrX 3282565 3282931 -173691209 + MSTA LTR MaLR 14 425 -3 333 221 168 44 chrX 3282978 3283091 -173691049 - MER58A DNA MER1_type 0 156 30 227 250 0 0 chrX 3283899 3283955 -173690185 + (TG)n Simple_repeat Simple_repeat 1 56 0 24 0 0 0 chrX 3284434 3284458 -173689682 + AT_rich Low_complexity Low_complexity 1 24 0 1090 262 62 59 chrX 3284745 3285233 -173688907 + MLT1D LTR MaLR 16 504 -1 1977 142 0 34 chrX 3286092 3286415 -173687725 + AluJb SINE Alu 1 312 0 801 103 135 70 chrX 3286478 3286634 -173687506 - L1MC1 LINE L1 0 6333 6168 240 203 203 0 chrX 3286703 3286767 -173687373 - LTR16B LTR ERVL 0 464 388 215 329 0 0 chrX 3286841 3286920 -173687220 + T-rich Low_complexity Low_complexity 4 82 0 2096 151 30 30 chrX 3286935 3287299 -173686841 - THE1B LTR MaLR 0 364 1 1068 133 0 0 chrX 3287338 3287518 -173686622 + (CAT)n Simple_repeat Simple_repeat 1 180 0 195 42 0 0 chrX 3287530 3287554 -173686586 + (CACCAT)n Simple_repeat Simple_repeat 1 24 0 1734 173 119 61 chrX 3287997 3288407 -173685733 - Tigger2a DNA MER2_type 0 434 1 1279 121 0 0 chrX 3289226 3289399 -173684741 + AluSx SINE Alu 1 173 -139 481 143 11 55 chrX 3289400 3289491 -173684649 + MSTA LTR MaLR 342 428 0 1060 164 180 16 chrX 3289518 3289762 -173684378 - MSTA LTR MaLR -134 294 11 2110 127 0 7 chrX 3290250 3290549 -173683591 - AluSx SINE Alu -15 297 1 1449 81 0 0 chrX 3290575 3290761 -173683379 - L1P LINE L1 -1989 4157 3972 274 265 70 114 chrX 3290903 3291175 -173682965 - MLT1J LTR MaLR -23 488 229 3303 233 31 17 chrX 3291489 3292369 -173681771 - L1MB7 LINE L1 -5 6179 5288 198 258 79 45 chrX 3292750 3292839 -173681301 - L3b LINE CR1 -216 1367 1276 758 233 48 37 chrX 3293791 3293980 -173680160 - MLT1E LTR MaLR -32 561 371 207 311 67 11 chrX 3294263 3294353 -173679787 + L2 LINE L2 2947 3041 -231 1737 146 26 0 chrX 3294471 3294738 -173679402 - AluSx SINE Alu -38 274 1 5476 98 24 17 chrX 3295087 3295747 -173678393 + L1PB1 LINE L1 5299 5968 -183 1978 149 0 7 chrX 3295747 3296048 -173678092 + AluSx SINE Alu 7 305 -7 5476 98 24 17 chrX 3296048 3296227 -173677913 + L1PB1 LINE L1 5968 6144 -7 21 36 0 0 chrX 3296546 3296574 -173677566 + AT_rich Low_complexity Low_complexity 1 28 0 199 146 36 0 chrX 3296975 3297030 -173677110 + T-rich Low_complexity Low_complexity 3 59 0 21 0 0 0 chrX 3297135 3297156 -173676984 + AT_rich Low_complexity Low_complexity 1 21 0 201 286 75 60 chrX 3297160 3297293 -173676847 - MIR SINE MIR -96 166 32 597 99 0 62 chrX 3297957 3298149 -173675991 + (TA)n Simple_repeat Simple_repeat 1 180 0 1693 160 10 10 chrX 3298417 3298724 -173675416 + L1MA8 LINE L1 5750 6056 -235 511 203 8 8 chrX 3298724 3298853 -173675287 + L1MA7 LINE L1 6159 6291 0 557 146 10 10 chrX 3298854 3298957 -173675183 + L1MC3 LINE L1 7682 7784 -1 227 200 50 50 chrX 3299162 3299242 -173674898 + (TATATG)n Simple_repeat Simple_repeat 6 85 0 183 184 0 0 chrX 3299247 3299285 -173674855 + (CA)n Simple_repeat Simple_repeat 1 38 0 25 0 0 0 chrX 3300226 3300251 -173673889 + AT_rich Low_complexity Low_complexity 1 25 0 203 291 0 0 chrX 3302241 3302296 -173671844 + (TTA)n Simple_repeat Simple_repeat 2 56 0 2067 147 0 3 chrX 3302367 3302679 -173671461 + AluSx SINE Alu 1 311 -1 445 272 80 0 chrX 3304914 3305039 -173669101 + MIR SINE MIR 84 218 -44 2818 222 39 47 chrX 3306052 3306281 -173667859 + L1MB8 LINE L1 4590 4819 -1359 2472 151 25 23 chrX 3306281 3306713 -173667427 - Tigger2a DNA MER2_type 0 434 2 2818 222 39 47 chrX 3306713 3307351 -173666789 + L1MB8 LINE L1 4819 5428 -750 1846 163 20 0 chrX 3307351 3307645 -173666495 + AluSx SINE Alu 1 300 -12 2818 222 39 47 chrX 3307645 3308186 -173665954 + L1MB8 LINE L1 5428 5972 -206 2183 168 28 30 chrX 3308477 3308983 -173665157 + L1MA8 LINE L1 5780 6284 -7 916 174 54 0 chrX 3309079 3309228 -173664912 - AluJo SINE Alu -27 285 129 723 104 0 0 chrX 3309247 3309353 -173664787 + (TC)n Simple_repeat Simple_repeat 1 106 0 788 173 0 0 chrX 3309353 3309486 -173664654 - AluJo SINE Alu -169 133 1 1827 116 77 116 chrX 3309891 3310244 -173663896 - Charlie3 DNA MER1_type 0 2712 1 443 294 68 0 chrX 3310287 3310450 -173663690 + MLT1D LTR MaLR 68 241 -264 277 321 0 0 chrX 3312116 3312197 -173661943 - MIR SINE MIR -93 169 89 1978 164 3 0 chrX 3312969 3313280 -173660860 + AluSx SINE Alu 1 312 0 334 377 45 36 chrX 3313286 3313623 -173660517 - L1MC4a LINE L1 -1903 5905 5566 2145 121 0 3 chrX 3313877 3314167 -173659973 + AluSx SINE Alu 1 289 -23 446 272 80 0 chrX 3316424 3316549 -173657591 + MIR SINE MIR 84 218 -44 226 281 11 62 chrX 3317472 3317650 -173656490 + MER90 LTR ERV1 1 169 -406 226 319 52 24 chrX 3317753 3317963 -173656177 + MER90 LTR ERV1 382 597 -17 210 158 0 0 chrX 3318014 3318052 -173656088 + T-rich Low_complexity Low_complexity 1 38 0 240 229 84 36 chrX 3318235 3318318 -173655822 + MER5A DNA MER1_type 26 112 -77 329 222 49 0 chrX 3318845 3318926 -173655214 + L2 LINE L2 3188 3272 0 412 271 23 17 chrX 3319059 3319219 -173654921 + (TATATG)n Simple_repeat Simple_repeat 1 159 -460 1409 189 66 0 chrX 3319219 3319537 -173654603 - MER44D DNA MER2_type 0 609 1 412 271 23 17 chrX 3319537 3319555 -173654585 + (TATATG)n Simple_repeat Simple_repeat 159 175 -444 270 0 0 0 chrX 3319555 3319585 -173654555 + (CA)n Simple_repeat Simple_repeat 2 31 0 412 271 23 17 chrX 3319585 3319675 -173654465 + (TATATG)n Simple_repeat Simple_repeat 175 619 0 291 256 23 11 chrX 3319712 3319796 -173654344 + (TA)n Simple_repeat Simple_repeat 2 84 -95 1695 206 21 0 chrX 3319796 3320136 -173654004 - MER7A DNA MER2_type 0 346 2 291 256 23 11 chrX 3320136 3320227 -173653913 + (TA)n Simple_repeat Simple_repeat 84 179 0 237 180 0 0 chrX 3321210 3321260 -173652880 + T-rich Low_complexity Low_complexity 1 50 0 226 244 0 0 chrX 3323013 3323058 -173651082 + (TATATG)n Simple_repeat Simple_repeat 3 47 0 240 163 0 0 chrX 3323704 3323747 -173650393 + CT-rich Low_complexity Low_complexity 3 45 0 726 246 65 5 chrX 3325023 3325222 -173648918 + MER20 DNA MER1_type 9 219 0 265 325 117 21 chrX 3326164 3326352 -173647788 + MIR SINE MIR 47 252 -10 213 179 0 39 chrX 3326548 3326626 -173647514 + (TA)n Simple_repeat Simple_repeat 1 75 0 701 207 14 24 chrX 3328083 3328586 -173645554 + CT-rich Low_complexity Low_complexity 1 497 0 180 158 0 0 chrX 3329872 3329910 -173644230 + T-rich Low_complexity Low_complexity 1 38 0 530 270 17 0 chrX 3329910 3330084 -173644056 - MER113 DNA MER1_type? -213 308 132 1275 242 25 28 chrX 3330323 3330757 -173643383 + MLT1C LTR MaLR 1 433 -34 1905 160 0 22 chrX 3330760 3331078 -173643062 - AluJb SINE Alu 0 312 2 180 179 0 0 chrX 3331851 3331890 -173642250 + (TATG)n Simple_repeat Simple_repeat 1 39 0 409 196 17 12 chrX 3331978 3332151 -173641989 + (TA)n Simple_repeat Simple_repeat 1 174 0 25 31 0 0 chrX 3332153 3332185 -173641955 + AT_rich Low_complexity Low_complexity 1 32 0 1792 158 13 20 chrX 3332315 3332441 -173641699 + AluJo SINE Alu 6 131 -181 1604 178 34 17 chrX 3332441 3332739 -173641401 + AluJo SINE Alu 1 303 -9 1792 158 13 20 chrX 3332739 3332916 -173641224 + AluJo SINE Alu 131 307 -5 336 176 0 0 chrX 3333118 3333186 -173640954 + (TG)n Simple_repeat Simple_repeat 1 68 0 180 0 0 0 chrX 3334276 3334296 -173639844 + (CA)n Simple_repeat Simple_repeat 2 21 0 1415 178 83 14 chrX 3335886 3336162 -173637978 - AluJb SINE Alu -17 295 1 208 294 101 37 chrX 3336546 3336655 -173637485 - MIR3 SINE MIR 0 208 93 189 0 0 0 chrX 3336714 3336735 -173637405 + (TATG)n Simple_repeat Simple_repeat 4 24 0 1676 148 21 17 chrX 3336735 3337015 -173637125 - AluJo SINE Alu -28 284 1 1758 120 8 8 chrX 3337035 3337294 -173636846 + AluSx SINE Alu 38 296 -16 522 222 6 11 chrX 3338080 3338260 -173635880 + GA-rich Low_complexity Low_complexity 1 179 0 389 252 7 0 chrX 3338283 3338434 -173635706 + GA-rich Low_complexity Low_complexity 1 152 0 1394 166 81 8 chrX 3338834 3339081 -173635059 + AluJo SINE Alu 7 271 -41 3077 169 58 36 chrX 3341936 3342276 -173631864 + LTR8A LTR ERV1 1 332 -395 764 125 0 17 chrX 3342276 3342396 -173631744 - L1PA15 LINE L1 -8 6157 6040 3077 169 58 36 chrX 3342396 3342767 -173631373 + LTR8A LTR ERV1 332 727 0 986 139 7 0 chrX 3343287 3343560 -173630580 + GA-rich Low_complexity Low_complexity 1 275 0 21 0 0 0 chrX 3343682 3343703 -173630437 + AT_rich Low_complexity Low_complexity 1 21 0 2702 107 0 0 chrX 3344194 3344558 -173629582 + THE1B LTR MaLR 1 364 0 362 151 14 0 chrX 3345037 3345110 -173629030 + (TA)n Simple_repeat Simple_repeat 2 75 0 2176 122 0 3 chrX 3345999 3346295 -173627845 - AluSx SINE Alu -17 295 1 310 364 54 39 chrX 3346546 3346881 -173627259 + L1MC4a LINE L1 5566 5905 -1903 1978 164 3 0 chrX 3346887 3347198 -173626942 - AluSx SINE Alu 0 312 1 277 321 0 0 chrX 3347970 3348051 -173626089 + MIR SINE MIR 89 169 -93 397 301 68 0 chrX 3349717 3349880 -173624260 - MLT1D LTR MaLR -264 241 68 1722 116 77 116 chrX 3349923 3350276 -173623864 + Charlie3 DNA MER1_type 1 2712 0 512 259 145 0 chrX 3350294 3350522 -173623618 - L1M4 LINE L1 -849 5297 5037 321 359 107 20 chrX 3350590 3351077 -173623063 - L2 LINE L2 -339 2975 2447 314 80 20 0 chrX 3351579 3351629 -173622511 + (TA)n Simple_repeat Simple_repeat 1 51 0 533 28 14 0 chrX 3351837 3351908 -173622232 + (GA)n Simple_repeat Simple_repeat 2 73 0 183 306 82 35 chrX 3352083 3352168 -173621972 + MER5B DNA MER1_type 36 124 -54 1538 124 0 0 chrX 3352695 3352936 -173621204 + L1MA5A LINE L1 6051 6291 -6 1997 117 6 22 chrX 3353027 3353343 -173620797 + AluSx SINE Alu 2 312 0 387 227 28 14 chrX 3353418 3353559 -173620581 - L1MB4 LINE L1 -38 6142 6000 1551 143 16 91 chrX 3353568 3353876 -173620264 - AluJb SINE Alu -16 296 12 2020 130 95 18 chrX 3353876 3354214 -173619926 - THE1B LTR MaLR 0 364 1 2860 103 2 7 chrX 3355034 3355461 -173618679 + L1PB1 LINE L1 5727 6151 0 292 292 21 21 chrX 3355611 3355707 -173618433 - MER5B DNA MER1_type -22 156 61 226 348 118 56 chrX 3355882 3356043 -173618097 - MER5A DNA MER1_type -9 180 10 816 65 0 0 chrX 3356462 3356569 -173617571 + (TA)n Simple_repeat Simple_repeat 2 108 0 560 278 90 75 chrX 3356596 3356618 -173617522 - L1MC5 LINE L1 -748 7213 7193 2129 145 24 19 chrX 3356618 3356991 -173617149 + THE1C LTR MaLR 1 375 0 560 278 90 75 chrX 3356991 3357356 -173616784 - L1MC5 LINE L1 -768 7193 6820 330 26 0 0 chrX 3357421 3357460 -173616680 + (CA)n Simple_repeat Simple_repeat 1 39 0 434 33 17 0 chrX 3357556 3357616 -173616524 + (TCTA)n Simple_repeat Simple_repeat 2 62 0 183 80 0 0 chrX 3357666 3357691 -173616449 + (TATG)n Simple_repeat Simple_repeat 3 27 0 184 365 50 25 chrX 3358407 3358566 -173615574 + L2 LINE L2 2308 2470 -844 883 144 0 8 chrX 3359484 3359616 -173614524 - FLAM_A SINE Alu -1 132 2 23 33 0 0 chrX 3359745 3359775 -173614365 + AT_rich Low_complexity Low_complexity 1 30 0 2014 94 33 14 chrX 3359814 3360089 -173614051 + AluSx SINE Alu 1 280 -32 213 121 0 0 chrX 3360137 3360170 -173613970 + (TA)n Simple_repeat Simple_repeat 1 33 0 1084 216 52 79 chrX 3360305 3360780 -173613360 - MER39 LTR ERV1 0 687 24 299 358 22 17 chrX 3360961 3361140 -173613000 + MER5A DNA MER1_type 1 180 -9 306 294 159 33 chrX 3363313 3363735 -173610405 + HAL1 LINE L1 1112 1586 -921 1374 143 4 44 chrX 3364658 3364910 -173609230 - L1MA9 LINE L1 -284 6028 5787 685 266 0 33 chrX 3365186 3365370 -173608770 + MLT1E2 LTR MaLR 431 608 -18 549 330 132 18 chrX 3365536 3366090 -173608050 + L1ME3A LINE L1 3508 4124 -2022 399 317 96 28 chrX 3366116 3366510 -173607630 + L1ME3A LINE L1 5521 5941 -229 1654 139 12 8 chrX 3367712 3367970 -173606170 - AluJo SINE Alu -20 292 34 243 297 17 114 chrX 3368183 3368358 -173605782 + L2 LINE L2 3151 3308 -5 202 304 14 0 chrX 3368639 3368708 -173605432 + (TTCGGG)n Simple_repeat Simple_repeat 6 75 0 22 0 0 0 chrX 3369465 3369487 -173604653 + AT_rich Low_complexity Low_complexity 1 22 0 369 75 0 0 chrX 3369565 3369618 -173604522 + (TG)n Simple_repeat Simple_repeat 2 54 0 186 171 0 0 chrX 3369986 3370027 -173604113 + (CA)n Simple_repeat Simple_repeat 2 42 0 1717 163 6 41 chrX 3371458 3371778 -173602362 + AluJo SINE Alu 1 309 -3 468 0 0 0 chrX 3371804 3371856 -173602284 + (TG)n Simple_repeat Simple_repeat 2 53 0 1808 183 0 3 chrX 3372596 3372908 -173601232 + AluJo SINE Alu 1 311 -1 1508 152 134 0 chrX 3373033 3373302 -173600838 + AluSx SINE Alu 2 306 -6 258 156 0 0 chrX 3373302 3373347 -173600793 + G-rich Low_complexity Low_complexity 1 45 0 1213 223 79 112 chrX 3373500 3374145 -173599995 + MLT1E2 LTR MaLR 1 626 0 1544 197 9 22 chrX 3374988 3375303 -173598837 + AluJo SINE Alu 1 311 -1 297 302 101 27 chrX 3375448 3375597 -173598543 + MIR SINE MIR 32 191 -71 1238 107 31 0 chrX 3376295 3376491 -173597649 + L1PA13 LINE L1 5893 6094 -69 742 258 5 21 chrX 3376691 3376881 -173597259 - MER20 DNA MER1_type -2 217 31 4384 118 3 6 chrX 3377304 3377963 -173596177 - L1PA13 LINE L1 -11 6152 5496 604 291 103 56 chrX 3379340 3379808 -173594332 - MLT1H1 LTR MaLR 0 555 66 230 313 0 0 chrX 3379947 3380014 -173594126 + MER117 DNA MER1_type 87 153 -44 966 269 62 0 chrX 3380801 3381106 -173593034 + MER33 DNA MER1_type 1 324 0 1556 181 61 3 chrX 3382144 3382470 -173591670 - MLT1A1 LTR MaLR 0 365 21 439 308 108 29 chrX 3382735 3383050 -173591090 - L2 LINE L2 -1423 1891 1552 651 170 26 46 chrX 3383286 3383439 -173590701 - MLT2C1 LTR ERVL -55 342 193 1615 186 7 17 chrX 3383709 3384004 -173590136 + AluJo SINE Alu 1 292 -20 1265 172 4 0 chrX 3384004 3384237 -173589903 + L1MA3 LINE L1 6071 6304 -1 1788 140 3 40 chrX 3384849 3385149 -173588991 - AluJo SINE Alu -18 294 6 480 89 0 0 chrX 3385213 3385292 -173588848 + (TC)n Simple_repeat Simple_repeat 2 80 0 296 149 53 9 chrX 3386742 3386856 -173587284 + (TA)n Simple_repeat Simple_repeat 1 119 0 272 48 24 0 chrX 3387573 3387615 -173586525 + (TG)n Simple_repeat Simple_repeat 2 44 0 247 290 0 0 chrX 3387617 3387686 -173586454 + GA-rich Low_complexity Low_complexity 2 70 0 938 9 0 9 chrX 3391600 3391775 -173582365 - AluY SINE Alu 0 345 172 1792 169 11 55 chrX 3393230 3393609 -173580531 + MLT1A1 LTR MaLR 4 365 0 2190 229 14 27 chrX 3393609 3394128 -173580012 + MLT1A1-int LTR MaLR 1 512 -1223 1555 182 10 40 chrX 3395136 3395433 -173578707 - AluJo SINE Alu -24 288 1 275 219 41 41 chrX 3395886 3395959 -173578181 - LTR16C LTR ERVL -1 490 418 180 0 0 0 chrX 3399055 3399075 -173575065 + (TC)n Simple_repeat Simple_repeat 2 21 0 * 459 0 0 0 chrX 3399074 3399125 -173575015 + (TG)n Simple_repeat Simple_repeat 2 52 0 7277 41 1 1 chrX 3399610 3400801 -173573339 + L1PA4 LINE L1 4962 6152 -3 1095 15 8 0 chrX 3400836 3400967 -173573173 + L1PA5 LINE L1 6023 6154 0 341 419 16 0 chrX 3401499 3401683 -173572457 - L3 LINE CR1 -11 1566 1380 848 253 78 32 chrX 3402550 3403024 -173571116 - L1ME3 LINE L1 -2 6160 5665 27 29 0 0 chrX 3403083 3403117 -173571023 + AT_rich Low_complexity Low_complexity 1 34 0 225 300 0 12 chrX 3403120 3403200 -173570940 + CT-rich Low_complexity Low_complexity 1 79 0 479 261 144 39 chrX 3403256 3403589 -173570551 - L1MCc LINE L1 -3319 3622 3255 263 299 82 42 chrX 3403623 3404051 -173570089 - L1MCc LINE L1 -4815 2307 1808 41 48 0 0 chrX 3404159 3404221 -173569919 + AT_rich Low_complexity Low_complexity 1 62 0 276 348 105 20 chrX 3404232 3404583 -173569557 - L1MCc LINE L1 -4887 1536 1156 282 224 0 0 chrX 3405307 3405365 -173568775 - L1MCc LINE L1 -6347 76 19 305 277 22 7 chrX 3405444 3405581 -173568559 + (TA)n Simple_repeat Simple_repeat 2 140 0 1887 157 0 7 chrX 3405609 3405903 -173568237 - AluSx SINE Alu -14 298 7 4367 92 5 17 chrX 3405920 3406563 -173567577 - L1PB1 LINE L1 -218 5933 5299 1737 146 26 0 chrX 3406912 3407179 -173566961 + AluSx SINE Alu 1 274 -38 208 297 66 22 chrX 3407297 3407388 -173566752 - L2 LINE L2 -231 3041 2947 758 233 48 37 chrX 3407672 3407861 -173566279 + MLT1E LTR MaLR 371 561 -32 198 258 79 45 chrX 3408813 3408902 -173565238 + L3b LINE CR1 1276 1367 -216 723 183 59 6 chrX 3409270 3409458 -173564682 + L1MB4 LINE L1 5272 5474 -696 192 77 0 0 chrX 3410967 3410993 -173563147 + (TG)n Simple_repeat Simple_repeat 2 27 0 1589 163 10 60 chrX 3410993 3411294 -173562846 - AluJo SINE Alu -26 286 1 1361 240 116 7 chrX 3411352 3411785 -173562355 - MLT2B1 LTR ERVL -40 480 1 1582 182 30 23 chrX 3412050 3412352 -173561788 - AluJo SINE Alu -8 304 1 1414 236 159 14 chrX 3412708 3413149 -173560991 - MLT1D LTR MaLR 0 505 1 1843 153 10 7 chrX 3413453 3413753 -173560387 - AluSx SINE Alu -11 301 1 953 144 0 11 chrX 3413758 3413938 -173560202 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 396 230 11 6 chrX 3413942 3414120 -173560020 + CT-rich Low_complexity Low_complexity 2 180 0 235 264 50 16 chrX 3414809 3414930 -173559210 + (TGGG)n Simple_repeat Simple_repeat 2 126 0 * 493 251 34 17 chrX 3414842 3415017 -173559123 + G-rich Low_complexity Low_complexity 2 179 0 561 213 0 0 chrX 3415028 3415192 -173558948 + G-rich Low_complexity Low_complexity 1 164 0 205 338 0 0 chrX 3415959 3416027 -173558113 - MIR3 SINE MIR -28 180 113 201 321 46 30 chrX 3417607 3417738 -173556402 + MIR SINE MIR 3 135 -127 2490 195 38 24 chrX 3417791 3418325 -173555815 + L1MB4 LINE L1 5600 6140 -40 28 61 0 0 chrX 3418356 3418405 -173555735 + AT_rich Low_complexity Low_complexity 1 49 0 197 0 0 67 chrX 3418979 3419009 -173555131 + (CCCCCT)n Simple_repeat Simple_repeat 2 29 0 27 29 0 0 chrX 3419146 3419180 -173554960 + GC_rich Low_complexity Low_complexity 1 34 0 287 216 57 34 chrX 3419400 3419488 -173554652 - LTR4 LTR ERV1 -500 96 7 * 587 203 138 91 chrX 3419472 3419764 -173554376 + LTR1B LTR ERV1 487 745 -81 1111 252 86 45 chrX 3420093 3420558 -173553582 + LTR1 LTR ERV1 2 485 -300 580 207 18 65 chrX 3420561 3420778 -173553362 - LTR4 LTR ERV1 0 596 390 280 260 21 62 chrX 3421072 3421168 -173552972 - LTR4 LTR ERV1 -479 117 26 273 98 0 0 chrX 3421309 3421350 -173552790 + (CA)n Simple_repeat Simple_repeat 1 41 0 231 238 19 9 chrX 3421509 3421614 -173552526 + (TA)n Simple_repeat Simple_repeat 2 107 0 516 273 61 6 chrX 3421722 3421887 -173552253 + REP3 LTR ERV 389 562 0 1253 195 84 15 chrX 3422168 3422289 -173551851 + AluJo SINE Alu 1 112 -200 270 0 0 0 chrX 3422289 3422319 -173551821 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 1253 195 84 15 chrX 3422319 3422459 -173551681 + AluJo SINE Alu 112 280 -32 225 163 0 0 chrX 3422706 3422755 -173551385 + G-rich Low_complexity Low_complexity 1 49 0 204 97 0 0 chrX 3422903 3422934 -173551206 + (G)n Simple_repeat Simple_repeat 1 31 0 366 369 0 0 chrX 3422966 3423142 -173550998 + G-rich Low_complexity Low_complexity 1 176 0 289 292 4 8 chrX 3424046 3424217 -173549923 + C-rich Low_complexity Low_complexity 1 170 0 676 183 56 16 chrX 3426213 3426339 -173547801 + FLAM_A SINE Alu 2 132 -1 217 314 0 14 chrX 3426577 3426647 -173547493 + (TATATG)n Simple_repeat Simple_repeat 3 71 0 183 129 0 0 chrX 3426659 3426690 -173547450 + (CATA)n Simple_repeat Simple_repeat 2 32 0 258 222 0 0 chrX 3426942 3426996 -173547144 - L1MA5 LINE L1 -198 6102 6049 482 79 13 0 chrX 3427781 3427857 -173546283 + (TC)n Simple_repeat Simple_repeat 1 77 0 347 344 0 6 chrX 3427859 3428067 -173546073 + C-rich Low_complexity Low_complexity 1 206 0 206 279 0 25 chrX 3428175 3428333 -173545807 + C-rich Low_complexity Low_complexity 6 159 0 21 0 0 0 chrX 3428790 3428811 -173545329 + AT_rich Low_complexity Low_complexity 1 21 0 1472 194 17 17 chrX 3430797 3431090 -173543050 + AluJo SINE Alu 17 309 -3 2178 103 7 7 chrX 3431112 3431403 -173542737 - AluSq SINE Alu -21 292 2 1281 186 68 15 chrX 3431661 3431925 -173542215 + AluJo SINE Alu 1 278 -34 724 181 129 0 chrX 3431926 3432081 -173542059 + L1PA16 LINE L1 5983 6157 -9 28 29 0 0 chrX 3432081 3432116 -173542024 + AT_rich Low_complexity Low_complexity 1 35 0 26 50 0 0 chrX 3432145 3432185 -173541955 + AT_rich Low_complexity Low_complexity 1 40 0 2161 129 0 0 chrX 3432642 3432944 -173541196 + AluSx SINE Alu 1 302 -10 186 43 0 0 chrX 3432970 3432993 -173541147 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 183 259 0 0 chrX 3434604 3434662 -173539478 + (CATATA)n Simple_repeat Simple_repeat 3 60 0 1004 323 56 37 chrX 3436780 3437347 -173536793 + L2 LINE L2 1050 1627 -1687 774 330 8 42 chrX 3437431 3437788 -173536352 + MLT1I LTR MaLR 63 407 -2 405 313 96 36 chrX 3437799 3438080 -173536060 + L2 LINE L2 1648 1945 -1369 1298 279 151 19 chrX 3438194 3439000 -173535140 + L2 LINE L2 1943 2855 -459 2278 115 63 17 chrX 3439021 3439369 -173534771 + THE1B LTR MaLR 1 364 0 2300 115 29 3 chrX 3439770 3440118 -173534022 + L1MA3 LINE L1 5947 6303 -2 27 22 0 22 chrX 3440334 3440354 -173533786 + AT_rich Low_complexity Low_complexity 1 20 -24 2064 115 31 3 chrX 3440354 3440640 -173533500 - AluSg SINE Alu -16 294 1 27 22 0 22 chrX 3440640 3440664 -173533476 + AT_rich Low_complexity Low_complexity 20 44 0 32 43 0 0 chrX 3440706 3440752 -173533388 + AT_rich Low_complexity Low_complexity 1 46 0 214 152 55 18 chrX 3440755 3440920 -173533220 + (TATAA)n Simple_repeat Simple_repeat 4 174 0 346 191 52 17 chrX 3440946 3441119 -173533021 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 237 166 70 0 chrX 3441130 3441287 -173532853 + (TATAA)n Simple_repeat Simple_repeat 5 172 0 21 57 0 0 chrX 3441438 3441473 -173532667 + AT_rich Low_complexity Low_complexity 1 35 0 204 125 0 0 chrX 3441590 3441622 -173532518 + (GA)n Simple_repeat Simple_repeat 1 32 0 3525 86 27 5 chrX 3442095 3442538 -173531602 + MLT2A2 LTR ERVL 1 453 0 233 265 12 24 chrX 3442644 3442700 -173531440 + (CATATA)n Simple_repeat Simple_repeat 2 58 -25 2593 121 14 16 chrX 3442700 3443065 -173531075 + THE1B LTR MaLR 1 364 0 233 265 12 24 chrX 3443065 3443091 -173531049 + (CATATA)n Simple_repeat Simple_repeat 58 83 0 828 78 95 0 chrX 3445646 3445669 -173528471 - L1MA2 LINE L1 -6 6298 6279 201 74 0 0 chrX 3445669 3445696 -173528444 + (TA)n Simple_repeat Simple_repeat 1 27 0 828 78 95 0 chrX 3445696 3445788 -173528352 - L1MA2 LINE L1 -25 6279 6172 447 256 8 8 chrX 3445792 3445913 -173528227 + Charlie4a DNA MER1_type 14 134 -374 384 256 40 24 chrX 3445924 3446049 -173528091 + Charlie4a DNA MER1_type 209 335 -173 832 173 0 7 chrX 3446073 3446212 -173527928 - FLAM_C SINE Alu 0 143 6 295 257 44 37 chrX 3446229 3446365 -173527775 + Charlie4a DNA MER1_type 352 488 -20 1874 181 7 0 chrX 3446610 3446919 -173527221 + AluJb SINE Alu 1 311 -1 1248 155 17 26 chrX 3448360 3448592 -173525548 - AluJo SINE Alu -82 230 1 900 155 0 0 chrX 3448592 3448721 -173525419 - AluJb SINE Alu -17 295 167 985 137 0 10 chrX 3449831 3450079 -173524061 - AluJb SINE Alu -16 296 1 620 284 12 12 chrX 3450123 3450292 -173523848 + MER5B DNA MER1_type 4 172 -6 316 288 33 79 chrX 3450366 3450606 -173523534 - HAL1 LINE L1 0 2507 2279 1839 183 0 0 chrX 3450649 3450944 -173523196 - AluJb SINE Alu -17 295 1 866 297 82 35 chrX 3451265 3451589 -173522551 - HAL1 LINE L1 -711 1796 1434 2624 118 64 10 chrX 3451589 3451995 -173522145 + MSTA LTR MaLR 1 428 0 866 297 82 35 chrX 3451995 3452233 -173521907 - HAL1 LINE L1 -1073 1434 1208 2870 126 29 6 chrX 3453080 3453558 -173520582 + MER39B LTR ERV1 1 489 -164 5047 129 15 44 chrX 3453567 3453596 -173520544 + L1PA16 LINE L1 5303 5331 -835 1883 128 14 14 chrX 3453596 3453919 -173520221 + AluSx SINE Alu 1 323 0 5047 129 15 44 chrX 3453919 3454759 -173519381 + L1PA16 LINE L1 5331 6148 -18 790 174 38 38 chrX 3454759 3454943 -173519197 + MER39B LTR ERV1 470 653 0 2075 171 96 19 chrX 3455430 3455846 -173518294 + LTR29 LTR ERV1 175 622 0 710 184 0 70 chrX 3455857 3456015 -173518125 + LTR29-int LTR ERV1 10 156 -6175 335 191 16 0 chrX 3456015 3456078 -173518062 + LTR29 LTR ERV1 559 622 0 578 261 44 54 chrX 3456113 3456206 -173517934 + MIR SINE MIR 61 153 -109 1658 205 84 70 chrX 3456206 3456703 -173517437 + MLT1D LTR MaLR 1 504 -1 578 261 44 54 chrX 3456703 3456812 -173517328 + MIR SINE MIR 153 261 -1 2245 112 0 22 chrX 3456973 3457286 -173516854 - AluSx SINE Alu -6 306 1 2325 143 28 3 chrX 3457594 3457950 -173516190 + MLT1A1 LTR MaLR 1 365 0 1363 172 62 44 chrX 3458642 3458915 -173515225 + AluJo SINE Alu 1 278 -34 270 0 0 0 chrX 3458920 3458950 -173515190 + (GGAA)n Simple_repeat Simple_repeat 3 32 0 216 143 0 0 chrX 3460387 3460429 -173513711 + (TG)n Simple_repeat Simple_repeat 1 42 0 515 273 22 57 chrX 3460609 3460757 -173513383 - MER20 DNA MER1_type 0 219 67 3845 144 2 0 chrX 3460757 3461340 -173512800 - L1PB4 LINE L1 -7 6149 5566 4128 147 1 0 chrX 3460762 3461428 -173512712 - L1PB4 LINE L1 -12 6144 5478 515 273 22 57 chrX 3461340 3461501 -173512639 - MER20 DNA MER1_type -152 67 1 21 0 0 0 chrX 3462552 3462573 -173511567 + AT_rich Low_complexity Low_complexity 1 21 0 234 62 0 0 chrX 3463067 3463099 -173511041 + (TG)n Simple_repeat Simple_repeat 1 32 0 1361 240 85 9 chrX 3463243 3463677 -173510463 + MLT1C LTR MaLR 1 467 0 23 54 0 0 chrX 3463690 3463727 -173510413 + AT_rich Low_complexity Low_complexity 1 37 0 364 220 11 0 chrX 3463737 3463828 -173510312 - L1MA9 LINE L1 -34 6278 6187 230 200 77 15 chrX 3464055 3464120 -173510020 + MIR3 SINE MIR 115 183 -25 184 293 104 9 chrX 3464757 3464863 -173509277 - L2 LINE L2 -21 3251 3136 643 229 133 0 chrX 3465349 3465515 -173508625 - MER5A DNA MER1_type -1 188 1 213 238 0 0 chrX 3465709 3465751 -173508389 - L2 LINE L2 -11 3302 3261 199 354 77 39 chrX 3466011 3466141 -173507999 - L2 LINE L2 -1 3271 3137 839 273 83 29 chrX 3466258 3466788 -173507352 - MLT1F1 LTR MaLR 0 567 2 1997 152 10 0 chrX 3467513 3467816 -173506324 + AluJb SINE Alu 5 310 -2 351 206 109 91 chrX 3469024 3469144 -173504996 + MIR SINE MIR 67 192 -70 1763 177 43 0 chrX 3469144 3469267 -173504873 + AluJo SINE Alu 1 117 -195 183 42 0 0 chrX 3469267 3469291 -173504849 + (TAA)n Simple_repeat Simple_repeat 2 25 0 1763 177 43 0 chrX 3469291 3469466 -173504674 + AluJo SINE Alu 117 312 0 351 206 109 91 chrX 3469466 3469520 -173504620 + MIR SINE MIR 192 244 -18 186 397 65 9 chrX 3469596 3469810 -173504330 + L2 LINE L2 2750 2975 -339 1984 138 7 3 chrX 3472065 3472361 -173501779 - AluJb SINE Alu -15 297 1 1511 181 0 36 chrX 3472571 3472848 -173501292 + AluJb SINE Alu 1 267 -45 2535 46 0 3 chrX 3473561 3473864 -173500276 - AluY SINE Alu 0 311 10 1455 201 7 31 chrX 3474046 3474339 -173499801 + AluJo SINE Alu 1 286 -26 28 29 0 0 chrX 3474340 3474375 -173499765 + AT_rich Low_complexity Low_complexity 1 35 0 483 314 53 0 chrX 3474785 3474954 -173499186 + MIR SINE MIR 37 214 -48 1059 99 0 0 chrX 3475003 3475155 -173498985 + L1PA8 LINE L1 6020 6171 -1 394 160 13 0 chrX 3475870 3475945 -173498195 - MADE1 DNA Mariner -4 76 1 1061 151 0 6 chrX 3475955 3476114 -173498026 - AluJb SINE Alu -25 287 130 2338 44 41 0 chrX 3476709 3477003 -173497137 - AluY SINE Alu -5 306 1 181 245 80 123 chrX 3477592 3477715 -173496425 + MIR SINE MIR 71 187 -75 1986 143 10 0 chrX 3477715 3478008 -173496132 + AluJo SINE Alu 1 296 -16 181 245 80 123 chrX 3478008 3478047 -173496093 + MIR SINE MIR 187 226 -36 2084 130 0 0 chrX 3478271 3478555 -173495585 - AluSx SINE Alu -17 295 12 1152 105 0 0 chrX 3478566 3478709 -173495431 - AluSq/x SINE Alu -169 144 2 410 188 12 0 chrX 3480370 3480450 -173493690 - AluSc SINE Alu -56 253 173 1601 94 0 0 chrX 3480517 3480719 -173493421 - AluSx SINE Alu -90 222 21 259 285 183 38 chrX 3481033 3481405 -173492735 + L2 LINE L2 943 1368 -1946 259 210 97 0 chrX 3481549 3481611 -173492529 + L2 LINE L2 1934 2001 -1313 1664 318 127 20 chrX 3481934 3483136 -173491004 + L2 LINE L2 1975 3311 -2 325 288 159 0 chrX 3483495 3483658 -173490482 - Charlie8 DNA MER1_type -2137 280 92 643 181 78 0 chrX 3483949 3484065 -173490075 + FRAM SINE Alu 3 127 -49 306 275 0 44 chrX 3484199 3484290 -173489850 + L2 LINE L2 3185 3271 -1 487 266 34 17 chrX 3484390 3484567 -173489573 - MIR SINE MIR -31 231 52 21 36 0 0 chrX 3485016 3485044 -173489096 + AT_rich Low_complexity Low_complexity 1 28 0 336 102 0 0 chrX 3485044 3485093 -173489047 + (CA)n Simple_repeat Simple_repeat 2 50 0 2223 115 16 0 chrX 3486137 3486441 -173487699 - AluSx SINE Alu -2 310 2 26 0 0 0 chrX 3486580 3486606 -173487534 + AT_rich Low_complexity Low_complexity 1 26 0 467 339 76 49 chrX 3486884 3487292 -173486848 + HAL1b LINE L1 115 1617 -816 208 238 8 57 chrX 3487744 3487866 -173486274 + A-rich Low_complexity Low_complexity 4 119 0 28 48 0 0 chrX 3487950 3487992 -173486148 + AT_rich Low_complexity Low_complexity 1 42 0 244 155 42 28 chrX 3488137 3488208 -173485932 + (CATATA)n Simple_repeat Simple_repeat 3 74 0 2028 121 0 0 chrX 3488308 3488590 -173485550 + AluSx SINE Alu 1 282 -30 226 207 0 35 chrX 3488700 3488758 -173485382 + (TATATG)n Simple_repeat Simple_repeat 4 59 0 499 275 39 30 chrX 3488998 3489336 -173484804 + L1M4 LINE L1 2940 3280 -2866 471 336 73 83 chrX 3489404 3490485 -173483655 + L1M4 LINE L1 3296 4372 -1774 337 242 31 39 chrX 3490962 3491090 -173483050 + LTR33 LTR ERVL 94 220 -301 2199 109 10 0 chrX 3491242 3491535 -173482605 + AluSg SINE Alu 1 296 -14 249 277 99 21 chrX 3491580 3491721 -173482419 + L1M4 LINE L1 4942 5093 -1053 527 176 7 110 chrX 3491890 3492026 -173482114 - FLAM_A SINE Alu -11 122 1 436 339 32 56 chrX 3492553 3492682 -173481458 - L1PA16 LINE L1 -253 5868 5737 1500 141 41 19 chrX 3492682 3492952 -173481188 + L1PA16 LINE L1 5881 6156 -10 436 339 32 56 chrX 3492952 3493200 -173480940 - L1ME4a LINE L1 -384 5737 5500 1816 163 3 16 chrX 3494013 3494319 -173479821 - AluJo SINE Alu -10 302 1 672 221 67 39 chrX 3496029 3496237 -173477903 - MER20 DNA MER1_type -5 214 1 740 162 54 18 chrX 3496286 3496453 -173477687 - MER20 DNA MER1_type 0 219 47 977 220 23 19 chrX 3496525 3496739 -173477401 - MER20 DNA MER1_type -4 215 1 197 266 65 81 chrX 3496979 3497103 -173477037 - L2 LINE L2 -868 2446 2325 783 192 0 0 chrX 3497195 3497372 -173476768 + (CAT)n Simple_repeat Simple_repeat 2 178 0 389 286 56 16 chrX 3497732 3497858 -173476282 - MER5A DNA MER1_type -11 178 48 946 237 27 5 chrX 3497968 3498187 -173475953 - MER58A DNA MER1_type 0 224 1 224 292 0 15 chrX 3498689 3498754 -173475386 + L2 LINE L2 3250 3313 0 716 121 0 121 chrX 3500202 3500351 -173473789 - FRAM SINE Alu -22 154 24 1501 262 82 35 chrX 3500390 3500902 -173473238 - MLT1E LTR MaLR -3 590 55 1299 242 77 41 chrX 3501148 3501590 -173472550 - MLT1C LTR MaLR -9 458 1 25 31 0 0 chrX 3502277 3502309 -173471831 + AT_rich Low_complexity Low_complexity 1 32 0 670 307 18 53 chrX 3502593 3502714 -173471426 + L2 LINE L2 3041 3165 -148 1478 191 10 37 chrX 3502714 3503013 -173471127 + AluJo SINE Alu 1 291 -21 670 307 18 53 chrX 3503013 3503174 -173470966 + L2 LINE L2 3165 3313 0 3418 140 2 4 chrX 3504253 3504809 -173469331 + L1PA15 LINE L1 5611 6165 0 218 157 59 20 chrX 3504885 3504936 -173469204 + A-rich Low_complexity Low_complexity 5 57 0 2193 118 0 3 chrX 3506026 3506331 -173467809 + AluSg SINE Alu 1 304 -6 1856 164 0 28 chrX 3506348 3506666 -173467474 + AluJo SINE Alu 1 309 -3 22 56 0 0 chrX 3508491 3508527 -173465613 + AT_rich Low_complexity Low_complexity 1 36 0 2308 88 3 7 chrX 3508531 3508836 -173465304 + AluY SINE Alu 1 304 -7 930 186 6 51 chrX 3509985 3510162 -173463978 + AluJo SINE Alu 1 169 -143 1568 169 55 44 chrX 3510162 3510528 -173463612 - THE1C LTR MaLR 0 375 6 664 168 67 0 chrX 3510533 3510652 -173463488 + AluJo SINE Alu 165 291 -21 258 214 0 0 chrX 3512034 3512090 -173462050 + L1MB3 LINE L1 6077 6132 -51 184 281 16 16 chrX 3512719 3512783 -173461357 + L2 LINE L2 3209 3272 0 458 163 92 0 chrX 3513173 3513271 -173460869 + L1MB3 LINE L1 6077 6183 0 185 365 29 19 chrX 3514023 3514127 -173460013 - MIR SINE MIR -50 212 108 215 229 0 0 chrX 3514255 3514303 -173459837 - MIR SINE MIR -66 142 95 224 250 0 0 chrX 3514492 3514536 -173459604 - L2 LINE L2 -12 3260 3217 2386 184 12 5 chrX 3514929 3515358 -173458782 + MSTB1 LTR MaLR 1 432 0 21 36 0 0 chrX 3516627 3516655 -173457485 + AT_rich Low_complexity Low_complexity 1 28 0 440 18 18 0 chrX 3516703 3516760 -173457380 + (TG)n Simple_repeat Simple_repeat 1 58 0 1419 188 73 4 chrX 3516760 3517021 -173457119 - AluJo SINE Alu -33 279 1 312 316 101 40 chrX 3517510 3517788 -173456352 + L2 LINE L2 3019 3313 0 2215 121 21 37 chrX 3518214 3518595 -173455545 + THE1C LTR MaLR 1 375 0 207 350 21 10 chrX 3518729 3518826 -173455314 + MIR SINE MIR 99 196 -66 335 330 144 8 chrX 3518837 3519101 -173455039 + L2 LINE L2 3013 3312 -1 251 250 26 40 chrX 3519092 3519168 -173454972 + MIR SINE MIR 188 262 0 * 1315 162 97 65 chrX 3520269 3520439 -173453701 - AluJo SINE Alu -11 301 117 1829 170 3 0 chrX 3520439 3520728 -173453412 + AluJb SINE Alu 1 290 -22 1315 162 97 65 chrX 3520728 3520847 -173453293 - AluJo SINE Alu -195 117 3 1817 171 0 16 chrX 3521687 3521992 -173452148 + AluJo SINE Alu 2 301 -11 2587 39 7 3 chrX 3522381 3522690 -173451450 - AluY SINE Alu -1 310 1 707 211 46 17 chrX 3522724 3522899 -173451241 + MSTD LTR MaLR 215 394 -2 474 328 134 31 chrX 3523122 3523665 -173450475 - L2 LINE L2 -833 2481 1883 471 198 18 79 chrX 3524035 3524307 -173449833 + MSTD LTR MaLR 3 320 -76 426 20 0 0 chrX 3526462 3526513 -173447627 + (CA)n Simple_repeat Simple_repeat 1 51 0 1635 193 3 3 chrX 3526587 3526883 -173447257 - AluJb SINE Alu -8 304 9 2147 111 23 7 chrX 3527555 3527862 -173446278 + AluSx SINE Alu 1 312 0 307 306 175 22 chrX 3529131 3529314 -173444826 - MIR SINE MIR -7 255 45 733 212 20 0 chrX 3529720 3529866 -173444274 + AluJo SINE Alu 3 151 -161 733 169 0 0 chrX 3529995 3530119 -173444021 + AluJo SINE Alu 156 279 -33 22 35 0 0 chrX 3530143 3530172 -173443968 + AT_rich Low_complexity Low_complexity 1 29 0 1018 197 96 60 chrX 3530413 3530839 -173443301 - MLT1D LTR MaLR -4 501 73 214 280 20 0 chrX 3531035 3531085 -173443055 + L2 LINE L2 3248 3298 -15 1778 183 27 0 chrX 3531855 3532155 -173441985 + AluJo SINE Alu 1 308 -4 2052 122 0 17 chrX 3532806 3533102 -173441038 - AluSx SINE Alu -17 295 5 2419 92 0 0 chrX 3533657 3533962 -173440178 - AluSc SINE Alu -4 305 1 24 0 0 0 chrX 3536014 3536038 -173438102 + AT_rich Low_complexity Low_complexity 1 24 0 1545 172 52 7 chrX 3537095 3537385 -173436755 - AluJo SINE Alu -8 304 2 239 309 12 12 chrX 3537395 3537476 -173436664 + L2 LINE L2 3227 3307 -6 211 196 87 0 chrX 3537805 3537851 -173436289 + MIR SINE MIR 92 141 -67 193 235 78 0 chrX 3538768 3538819 -173435321 + L2 LINE L2 3201 3255 -17 833 261 23 5 chrX 3539178 3539393 -173434747 - MER20 DNA MER1_type 0 219 1 21 0 0 0 chrX 3539820 3539841 -173434299 + AT_rich Low_complexity Low_complexity 1 21 0 4440 129 13 16 chrX 3540958 3541377 -173432763 + L1PA16 LINE L1 5408 5826 -340 2599 48 3 0 chrX 3541377 3541687 -173432453 + AluY SINE Alu 1 311 0 4440 129 13 16 chrX 3541687 3542019 -173432121 + L1PA16 LINE L1 5826 6157 -9 2233 138 40 8 chrX 3542406 3542805 -173431335 + MSTA LTR MaLR 17 428 0 29 0 0 0 chrX 3543579 3543608 -173430532 + AT_rich Low_complexity Low_complexity 1 29 0 1718 152 176 16 chrX 3543615 3543984 -173430156 - MSTC LTR MaLR 0 428 1 1295 190 19 16 chrX 3544695 3545119 -173429021 + MLT1D LTR MaLR 7 485 -20 2367 79 3 3 chrX 3545455 3545760 -173428380 + AluY SINE Alu 1 305 -6 435 245 0 10 chrX 3548350 3548452 -173425688 - MER58B DNA MER1_type -9 332 232 272 338 15 15 chrX 3548791 3548924 -173425216 + (CATATA)n Simple_repeat Simple_repeat 6 138 0 364 249 106 53 chrX 3549061 3549250 -173424890 - L1ME LINE L1 -415 5706 5508 237 83 0 0 chrX 3549300 3549336 -173424804 + (TAAAA)n Simple_repeat Simple_repeat 4 39 0 260 296 163 52 chrX 3550340 3550475 -173423665 + L2 LINE L2 3123 3272 0 203 317 0 0 chrX 3550941 3551001 -173423139 + L2 LINE L2 3249 3308 -5 211 271 122 19 chrX 3551358 3551465 -173422675 + MIR SINE MIR 28 145 -63 23 86 0 0 chrX 3551742 3551800 -173422340 + AT_rich Low_complexity Low_complexity 1 58 0 952 193 14 40 chrX 3552233 3552456 -173421684 + MER20 DNA MER1_type 3 219 0 183 222 0 0 chrX 3552478 3552523 -173421617 + GA-rich Low_complexity Low_complexity 4 48 0 * 286 130 0 58 chrX 3552516 3552585 -173421555 + (GGAA)n Simple_repeat Simple_repeat 1 65 0 204 284 14 14 chrX 3552595 3552669 -173421471 + GA-rich Low_complexity Low_complexity 2 75 0 190 340 47 0 chrX 3552698 3552804 -173421336 - MIR SINE MIR -62 200 90 261 245 25 6 chrX 3553373 3553536 -173420604 + CT-rich Low_complexity Low_complexity 4 169 0 412 191 9 18 chrX 3553746 3553856 -173420284 + CT-rich Low_complexity Low_complexity 4 112 0 351 282 40 24 chrX 3554281 3554405 -173419735 + L1MEd LINE L1 1004 1129 -5401 440 282 74 45 chrX 3554489 3554856 -173419284 + L1MEd LINE L1 1293 1649 -4881 231 272 39 19 chrX 3555021 3555124 -173419016 + L1MEd LINE L1 1865 1969 -4571 396 295 48 39 chrX 3555955 3556200 -173417940 + L1MEd LINE L1 3336 3577 -2963 253 293 75 0 chrX 3556336 3556442 -173417698 + MER81 DNA DNA 1 114 0 462 36 0 0 chrX 3556913 3556969 -173417171 + (TG)n Simple_repeat Simple_repeat 2 57 0 676 222 116 25 chrX 3557475 3557673 -173416467 + MER20 DNA MER1_type 4 219 0 270 0 0 0 chrX 3558765 3558795 -173415345 + (TG)n Simple_repeat Simple_repeat 2 31 0 451 276 63 9 chrX 3558831 3559052 -173415088 - L1M4 LINE L1 -3597 2549 2317 1669 144 16 53 chrX 3559830 3560150 -173413990 + AluJo SINE Alu 5 312 0 589 214 231 6 chrX 3560762 3560935 -173413205 - MER20 DNA MER1_type -1 218 7 286 354 16 8 chrX 3560938 3561065 -173413075 + L2 LINE L2 3186 3313 0 215 151 38 57 chrX 3561430 3561483 -173412657 + L2 LINE L2 3220 3271 -1 3445 98 22 4 chrX 3561683 3562185 -173411955 - MER9 LTR ERVK 0 511 1 227 245 187 36 chrX 3562536 3562675 -173411465 - L2 LINE L2 0 3313 3154 22 56 0 0 chrX 3562862 3562898 -173411242 + AT_rich Low_complexity Low_complexity 1 36 0 198 167 0 0 chrX 3563039 3563075 -173411065 + (TAGA)n Simple_repeat Simple_repeat 2 37 0 1465 143 17 28 chrX 3563084 3563137 -173411003 + MLT1A1 LTR MaLR 1 53 -321 4171 99 9 41 chrX 3563137 3563629 -173410511 + L1MA2 LINE L1 5649 6115 -189 2368 78 0 3 chrX 3563629 3563924 -173410216 - AluY SINE Alu -17 294 1 4171 99 9 41 chrX 3563924 3564109 -173410031 + L1MA2 LINE L1 6115 6304 0 1465 143 17 28 chrX 3564109 3564366 -173409774 + MLT1A1 LTR MaLR 53 292 -82 529 170 7 7 chrX 3564450 3564597 -173409543 + (CATA)n Simple_repeat Simple_repeat 2 148 0 210 167 64 26 chrX 3564598 3564676 -173409464 + (TAGA)n Simple_repeat Simple_repeat 2 82 0 214 222 32 16 chrX 3565795 3565858 -173408282 + (TG)n Simple_repeat Simple_repeat 1 64 0 180 0 0 0 chrX 3566342 3566362 -173407778 + (TC)n Simple_repeat Simple_repeat 2 21 0 1832 136 0 0 chrX 3566881 3567132 -173407008 - AluSx SINE Alu -18 294 44 653 228 91 9 chrX 3567866 3568085 -173406055 - MER46C DNA MER2_type -101 237 1 1781 147 6 26 chrX 3568272 3568612 -173405528 - L1MC1 LINE L1 -260 6073 5741 2332 182 7 2 chrX 3569357 3569814 -173404326 - L1PA16 LINE L1 0 6166 5708 24 0 0 0 chrX 3570145 3570169 -173403971 + AT_rich Low_complexity Low_complexity 1 24 0 1742 146 31 17 chrX 3570207 3570318 -173403822 + AluJb SINE Alu 11 119 -193 207 0 0 0 chrX 3570318 3570341 -173403799 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1742 146 31 17 chrX 3570341 3570516 -173403624 + AluJb SINE Alu 119 301 -11 216 390 20 30 chrX 3570591 3570691 -173403449 + L2 LINE L2 2979 3077 -195 1707 185 3 19 chrX 3570793 3571101 -173403039 + AluJo SINE Alu 1 303 -9 21 0 0 0 chrX 3572354 3572375 -173401765 + AT_rich Low_complexity Low_complexity 1 21 0 252 59 0 0 chrX 3572814 3572848 -173401292 + (CCCTAA)n Simple_repeat Simple_repeat 3 36 0 1208 163 154 86 chrX 3573016 3573269 -173400871 + MLT1A1 LTR MaLR 4 287 -78 1625 192 0 24 chrX 3573269 3573560 -173400580 + AluJo SINE Alu 1 284 -28 1208 163 154 86 chrX 3573560 3573643 -173400497 + MLT1A1 LTR MaLR 287 363 -2 396 227 13 53 chrX 3573971 3574121 -173400019 + L1PA16 LINE L1 6007 6150 -16 918 178 11 0 chrX 3574191 3574376 -173399764 + L1MC3 LINE L1 6951 7137 -648 1307 96 0 11 chrX 3574382 3574560 -173399580 - AluSg/x SINE Alu 0 312 137 2309 211 57 10 chrX 3574560 3575187 -173398953 + L1MC3 LINE L1 7129 7785 0 1239 136 60 23 chrX 3575613 3575914 -173398226 - AluSx SINE Alu 0 312 1 208 310 17 0 chrX 3576727 3576785 -173397355 + MIR SINE MIR 30 88 -120 218 320 10 31 chrX 3577769 3577866 -173396274 + L2 LINE L2 3173 3267 -5 1530 192 3 10 chrX 3580211 3580502 -173393638 - AluJo SINE Alu -23 289 1 2216 97 7 0 chrX 3580768 3581068 -173393072 - AluY SINE Alu -9 302 1 184 250 19 0 chrX 3581319 3581371 -173392769 + L2 LINE L2 1703 1755 -1559 309 89 0 0 chrX 3582502 3582547 -173391593 + (TG)n Simple_repeat Simple_repeat 1 45 0 323 218 20 30 chrX 3582662 3582763 -173391377 - MLT1A1 LTR MaLR -263 102 3 238 276 79 0 chrX 3582780 3582856 -173391284 - L2 LINE L2 -47 3266 3185 186 314 29 14 chrX 3582887 3582957 -173391183 + L2 LINE L2 3188 3258 -14 338 252 161 13 chrX 3583350 3583505 -173390635 + L1ME1 LINE L1 5355 5532 -634 2091 63 47 20 chrX 3583541 3583841 -173390299 - L1PA11 LINE L1 0 6174 5867 256 268 89 21 chrX 3583852 3584042 -173390098 + L1ME1 LINE L1 5711 5913 -253 927 174 0 18 chrX 3584164 3584331 -173389809 - AluJo SINE Alu -108 204 41 354 143 0 0 chrX 3584438 3584501 -173389639 + (TG)n Simple_repeat Simple_repeat 2 64 0 775 130 0 9 chrX 3584586 3584701 -173389439 + FRAM SINE Alu 42 155 -21 236 191 106 21 chrX 3584943 3585037 -173389103 + L1MC5 LINE L1 7452 7553 -408 2124 122 3 0 chrX 3586181 3586476 -173387664 + AluSx SINE Alu 1 296 -16 2174 243 75 13 chrX 3587091 3587856 -173386284 + L1MC3 LINE L1 6974 7785 0 766 158 8 0 chrX 3588832 3588959 -173385181 + FLAM_C SINE Alu 2 129 -4 2329 84 7 0 chrX 3589486 3589782 -173384358 + AluSp SINE Alu 1 298 -15 341 262 68 0 chrX 3589788 3589891 -173384249 + MIR3 SINE MIR 94 203 -5 2078 107 57 0 chrX 3590096 3590376 -173383764 - AluSx SINE Alu -14 298 3 1400 199 34 38 chrX 3591009 3591300 -173382840 - AluJo SINE Alu -22 290 1 185 180 20 0 chrX 3591403 3591453 -173382687 + (TATATG)n Simple_repeat Simple_repeat 2 52 0 21 36 0 0 chrX 3591588 3591616 -173382524 + AT_rich Low_complexity Low_complexity 1 28 0 315 0 0 0 chrX 3592693 3592728 -173381412 + (CA)n Simple_repeat Simple_repeat 1 35 0 203 224 30 0 chrX 3593230 3593297 -173380843 + (TA)n Simple_repeat Simple_repeat 1 69 0 309 183 0 0 chrX 3593334 3593394 -173380746 + (TA)n Simple_repeat Simple_repeat 1 60 0 929 158 0 16 chrX 3593522 3593705 -173380435 + CT-rich Low_complexity Low_complexity 1 180 0 844 168 6 6 chrX 3593724 3593903 -173380237 + CT-rich Low_complexity Low_complexity 1 179 0 240 318 68 11 chrX 3595062 3595150 -173378990 - L2 LINE L2 -291 2981 2889 23 33 0 0 chrX 3595795 3595825 -173378315 + AT_rich Low_complexity Low_complexity 1 30 0 30 45 0 0 chrX 3596963 3597007 -173377133 + AT_rich Low_complexity Low_complexity 1 44 0 2057 126 7 0 chrX 3597099 3597384 -173376756 + AluSx SINE Alu 1 287 -25 219 114 0 0 chrX 3598129 3598164 -173375976 + (TG)n Simple_repeat Simple_repeat 2 36 0 1869 243 50 24 chrX 3598182 3598885 -173375255 - L1M4 LINE L1 -1304 4842 4122 763 264 10 40 chrX 3598986 3599289 -173374851 + L1MEc LINE L1 514 807 -5589 1542 114 13 9 chrX 3599317 3599545 -173374595 + AluSg/x SINE Alu 77 305 -7 572 280 88 15 chrX 3599568 3599707 -173374433 + L1MEc LINE L1 936 1063 -5152 453 19 0 0 chrX 3599707 3599761 -173374379 + (CA)n Simple_repeat Simple_repeat 2 55 0 572 280 88 15 chrX 3599761 3600018 -173374122 + L1MEc LINE L1 1063 1361 -4854 2048 104 11 21 chrX 3600108 3600395 -173373745 + AluY SINE Alu 1 284 -27 216 0 0 0 chrX 3600395 3600419 -173373721 + (CAAT)n Simple_repeat Simple_repeat 2 25 0 803 267 58 16 chrX 3600448 3600811 -173373329 + L1MEc LINE L1 1601 1978 -4418 1016 257 85 26 chrX 3600823 3601282 -173372858 + L1M4 LINE L1 3673 4158 -1988 340 295 18 36 chrX 3601816 3601928 -173372212 - L1MC4 LINE L1 -1319 6723 6614 1636 249 96 41 chrX 3601931 3602143 -173371997 - MLT2F LTR ERVL -44 619 420 1834 190 22 3 chrX 3602143 3602501 -173371639 + MLT1A1 LTR MaLR 1 365 0 1636 249 96 41 chrX 3602501 3602871 -173371269 - MLT2F LTR ERVL -243 420 5 542 299 19 52 chrX 3603818 3603944 -173370196 - MIR SINE MIR -22 240 122 2326 93 0 13 chrX 3603944 3604254 -173369886 + AluSc SINE Alu 1 306 -3 542 299 19 52 chrX 3604254 3604338 -173369802 - MIR SINE MIR -140 122 37 230 226 139 26 chrX 3604575 3604690 -173369450 + L1MEc LINE L1 44 171 -6225 978 246 139 3 chrX 3604935 3605252 -173368888 - MLT1A1 LTR MaLR -5 360 1 2397 113 52 0 chrX 3605717 3606063 -173368077 - THE1B LTR MaLR 0 364 1 1679 180 34 55 chrX 3606276 3606714 -173367426 + L1MC3 LINE L1 6673 7101 -684 1825 118 33 13 chrX 3606738 3607042 -173367098 + MSTA LTR MaLR 118 427 -1 1112 137 49 0 chrX 3607043 3607247 -173366893 + L1MC3 LINE L1 7099 7312 -473 1725 151 3 34 chrX 3607581 3607879 -173366261 + AluJb SINE Alu 3 291 -21 222 132 59 29 chrX 3607888 3607956 -173366184 + (TA)n Simple_repeat Simple_repeat 1 70 0 2252 73 39 3 chrX 3607967 3608253 -173365887 + AluSc SINE Alu 1 296 -13 1565 194 18 7 chrX 3608286 3608569 -173365571 + AluJo SINE Alu 1 286 -26 390 91 0 0 chrX 3608570 3608625 -173365515 + (CA)n Simple_repeat Simple_repeat 2 56 0 2003 98 42 0 chrX 3608658 3608943 -173365197 - AluSq SINE Alu -16 297 1 2062 155 0 0 chrX 3608951 3609247 -173364893 - AluSx SINE Alu -16 296 1 814 310 30 11 chrX 3609633 3609904 -173364236 + MLT1E LTR MaLR 280 555 -38 1222 204 5 14 chrX 3610513 3610734 -173363406 - MER20 DNA MER1_type 0 219 1 228 256 61 12 chrX 3610878 3610960 -173363180 - MER20B DNA MER1_type -633 150 65 366 23 0 0 chrX 3611302 3611345 -173362795 + (TG)n Simple_repeat Simple_repeat 1 43 0 2029 152 0 0 chrX 3611432 3611741 -173362399 - AluSx SINE Alu -2 310 2 414 161 35 0 chrX 3611748 3611835 -173362305 - L1MB3 LINE L1 0 6183 6094 294 125 0 0 chrX 3612429 3612477 -173361663 + (TC)n Simple_repeat Simple_repeat 1 48 0 351 0 0 0 chrX 3612480 3612519 -173361621 + (CA)n Simple_repeat Simple_repeat 1 39 0 4109 26 11 0 chrX 3612962 3613429 -173360711 - L1PA4 LINE L1 -3 6152 5681 2019 134 7 16 chrX 3613595 3613902 -173360238 - AluSx SINE Alu -7 305 2 1960 156 0 9 chrX 3614540 3614855 -173359285 - AluSx SINE Alu 0 312 1 210 71 0 0 chrX 3614984 3615012 -173359128 + (GA)n Simple_repeat Simple_repeat 2 29 0 304 289 68 55 chrX 3615457 3615679 -173358461 + MER106B DNA MER1_type 7 1058 -1 1962 150 0 3 chrX 3615847 3616153 -173357987 + AluJo SINE Alu 1 305 -7 1276 284 26 7 chrX 3616220 3616643 -173357497 + MER63B DNA MER1_type 6 436 0 1356 186 12 0 chrX 3617119 3617501 -173356639 + L1P4 LINE L1 5096 5480 -686 1698 168 46 7 chrX 3618928 3619213 -173354927 + AluJo SINE Alu 1 296 -16 1616 190 3 3 chrX 3620986 3621275 -173352865 - AluJb SINE Alu -23 289 1 214 143 32 16 chrX 3622083 3622146 -173351994 + CT-rich Low_complexity Low_complexity 1 64 0 1648 141 0 77 chrX 3622160 3622477 -173351663 - AluJo SINE Alu 0 450 165 2024 118 40 0 chrX 3622477 3622773 -173351367 - AluSq SINE Alu -5 308 1 1648 141 0 77 chrX 3622773 3622915 -173351225 - AluJo SINE Alu -285 165 14 834 236 75 30 chrX 3623083 3623378 -173350762 + MER58 DNA MER1_type 12 2420 0 2604 173 24 4 chrX 3625355 3625807 -173348333 - L1PA16 LINE L1 0 6166 5706 201 74 0 0 chrX 3626211 3626238 -173347902 + (TG)n Simple_repeat Simple_repeat 2 28 0 221 238 12 0 chrX 3626242 3626322 -173347818 + (CA)n Simple_repeat Simple_repeat 2 82 0 23 0 0 0 chrX 3627053 3627076 -173347064 + AT_rich Low_complexity Low_complexity 1 23 0 432 282 99 15 chrX 3627262 3627472 -173346668 + MLT1E1 LTR MaLR 15 244 -410 1645 235 121 50 chrX 3627541 3628095 -173346045 + MLT1E LTR MaLR 1 593 0 1099 293 56 58 chrX 3629208 3629727 -173344413 - MLT1E LTR MaLR -5 588 102 339 209 32 0 chrX 3629718 3629791 -173344349 - MLT1E LTR MaLR -430 137 64 * 360 298 43 31 chrX 3629969 3630130 -173344010 + MIR3 SINE MIR 44 206 -2 1073 212 23 46 chrX 3630192 3630499 -173343641 + MER33 DNA MER1_type 15 314 -10 250 337 12 65 chrX 3631202 3631371 -173342769 + MER5B DNA MER1_type 19 178 0 21 0 0 0 chrX 3631710 3631731 -173342409 + AT_rich Low_complexity Low_complexity 1 21 0 1057 149 8 2 chrX 3632004 3632194 -173341946 + L1PA16 LINE L1 5646 5835 -331 637 278 45 18 chrX 3632311 3632534 -173341606 - LTR16B LTR ERVL -231 233 5 1653 137 9 0 chrX 3632935 3633213 -173340927 - L1PA16 LINE L1 -196 5959 5669 1210 129 144 0 chrX 3633206 3633407 -173340733 + L1PA16 LINE L1 5928 6157 -9 * 688 414 99 39 chrX 3633811 3634193 -173339947 - MLT1C LTR MaLR -60 407 3 221 56 0 28 chrX 3634969 3635005 -173339135 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 626 65 0 2 chrX 3635005 3635090 -173339050 - L1PA3 LINE L1 -20 6148 6059 537 263 120 62 chrX 3635601 3636069 -173338071 - L1MC/D LINE L1 -1986 5822 5328 1839 155 10 0 chrX 3636183 3636480 -173337660 - MLT1B LTR MaLR 0 390 91 1753 188 14 51 chrX 3636484 3636701 -173337439 - MER2 DNA MER2_type -1 344 144 1798 180 30 35 chrX 3636701 3637040 -173337100 - MER1B DNA MER1_type 0 337 1 1753 188 14 51 chrX 3637040 3637178 -173336962 - MER2 DNA MER2_type -201 144 2 415 197 13 0 chrX 3637179 3637255 -173336885 - MLT1B LTR MaLR -303 87 11 1025 231 14 24 chrX 3637293 3637558 -173336582 + MLT2C1 LTR ERVL 99 429 -35 225 191 55 45 chrX 3637584 3637694 -173336446 + (TATAA)n Simple_repeat Simple_repeat 4 114 0 250 138 0 31 chrX 3637695 3637760 -173336380 + (TTATA)n Simple_repeat Simple_repeat 5 67 0 232 130 65 43 chrX 3637771 3637863 -173336277 + (TA)n Simple_repeat Simple_repeat 2 95 0 202 155 50 37 chrX 3637957 3638118 -173336022 + (TA)n Simple_repeat Simple_repeat 1 163 0 1107 135 0 12 chrX 3638129 3638292 -173335848 - AluJb SINE Alu -18 294 134 253 140 0 140 chrX 3638306 3638363 -173335777 + MLT2C1 LTR ERVL 354 397 0 3050 76 95 0 chrX 3638569 3638978 -173335162 - LTR7 LTR ERV1 -2 448 1 2179 106 70 14 chrX 3638978 3639347 -173334793 - HERVH LTR ERV1 0 7713 7324 1430 119 18 9 chrX 3639347 3639565 -173334575 - HERVH LTR ERV1 -1894 5819 5600 4431 138 1 1 chrX 3639566 3640228 -173333912 - HERVH LTR ERV1 -2564 5149 4488 3522 97 4 4 chrX 3640230 3640724 -173333416 - HERVH LTR ERV1 -3720 3993 3500 869 155 20 0 chrX 3640723 3640871 -173333269 - HERVH LTR ERV1 -4423 3290 3140 * 20331 92 14 23 chrX 3640865 3643880 -173330260 - HERVH LTR ERV1 -4726 2987 1 3065 73 95 0 chrX 3643882 3644291 -173329849 - LTR7 LTR ERV1 -2 448 1 1532 196 96 25 chrX 3644417 3644780 -173329360 - MLT1B LTR MaLR -1 389 1 189 0 0 0 chrX 3646931 3646952 -173327188 + (GA)n Simple_repeat Simple_repeat 2 22 0 225 323 0 0 chrX 3648266 3648328 -173325812 + L2 LINE L2 3209 3270 -2 184 280 147 87 chrX 3648715 3648865 -173325275 - MIR SINE MIR -91 171 13 470 274 144 45 chrX 3649038 3649239 -173324901 - MLT1E LTR MaLR -206 387 167 314 289 24 0 chrX 3649270 3649353 -173324787 - MLT1E LTR MaLR -457 85 1 2303 114 33 43 chrX 3649600 3649968 -173324172 - THE1B LTR MaLR 0 364 1 443 63 16 0 chrX 3650047 3650110 -173324030 + (ATG)n Simple_repeat Simple_repeat 2 65 0 199 301 217 18 chrX 3650472 3650638 -173323502 - MIR SINE MIR -1 261 63 203 284 11 23 chrX 3651401 3651489 -173322651 + (TATATG)n Simple_repeat Simple_repeat 4 90 0 693 308 101 27 chrX 3651552 3652026 -173322114 + Tigger8 DNA MER2_type 149 657 -9 23 33 0 0 chrX 3652123 3652153 -173321987 + AT_rich Low_complexity Low_complexity 1 30 0 2807 94 8 6 chrX 3652197 3652560 -173321580 - THE1B LTR MaLR 0 364 1 1729 173 0 10 chrX 3652898 3653193 -173320947 - AluJo SINE Alu -13 299 8 24 32 0 0 chrX 3654109 3654140 -173320000 + AT_rich Low_complexity Low_complexity 1 31 0 2240 106 0 3 chrX 3654272 3654564 -173319576 - AluSc SINE Alu -18 291 1 186 234 0 21 chrX 3655522 3655569 -173318571 + MER5A DNA MER1_type 11 56 -133 257 98 0 78 chrX 3655573 3655624 -173318516 - L1P LINE L1 -729 5427 5381 * 3331 179 20 38 chrX 3655620 3655673 -173318467 + L1MA4A LINE L1 5442 5494 -809 2232 113 3 3 chrX 3655673 3655984 -173318156 + AluSx SINE Alu 1 311 -1 3331 179 20 38 chrX 3655984 3656623 -173317517 + L1MA4A LINE L1 5494 6122 -181 451 196 11 0 chrX 3656626 3656723 -173317417 + L1MA4A LINE L1 6058 6278 -1 219 250 296 0 chrX 3656735 3656823 -173317317 + MER5A DNA MER1_type 63 176 -13 1442 247 80 30 chrX 3657398 3657896 -173316244 - Charlie1b DNA MER1_type 0 523 1 254 239 0 0 chrX 3658065 3658111 -173316029 - MER45 DNA AcHobo -21 1560 1515 1305 116 5 53 chrX 3658117 3658324 -173315816 + AluJo SINE Alu 87 283 -29 268 82 20 20 chrX 3658326 3658375 -173315765 + (TA)n Simple_repeat Simple_repeat 2 50 0 323 167 12 60 chrX 3658375 3658459 -173315681 - MER45 DNA AcHobo -74 104 46 776 332 48 45 chrX 3658534 3659049 -173315091 - L1MCc LINE L1 -5245 1178 662 2097 156 47 32 chrX 3659171 3659715 -173314425 - MLT2A2 LTR ERVL 0 554 1 951 123 7 52 chrX 3659818 3659972 -173314168 - AluJo SINE Alu -9 303 157 633 159 9 9 chrX 3659972 3660079 -173314061 - AluJo SINE Alu -204 108 2 461 270 48 16 chrX 3660079 3660205 -173313935 - L1MCc LINE L1 -5953 470 341 495 233 50 133 chrX 3660217 3660616 -173313524 - LTR37A LTR ERV1 -11 415 50 253 289 164 19 chrX 3660669 3660828 -173313312 - L1MCc LINE L1 -6076 347 166 240 35 0 0 chrX 3661585 3661614 -173312526 + (T)n Simple_repeat Simple_repeat 1 29 0 1524 151 6 61 chrX 3662582 3662759 -173311381 - AluJo SINE Alu -2 310 156 2240 106 0 7 chrX 3662759 3663062 -173311078 - AluSg SINE Alu -9 301 1 1524 151 6 61 chrX 3663062 3663195 -173310945 - AluJo SINE Alu -156 156 17 449 323 25 12 chrX 3663250 3663411 -173310729 + MIR SINE MIR 31 193 -69 1804 166 3 19 chrX 3664421 3664735 -173309405 - AluJo SINE Alu -3 309 1 237 219 32 73 chrX 3665153 3665276 -173308864 - HAL1b LINE L1 -899 449 332 262 342 41 82 chrX 3665878 3666147 -173307993 + L2 LINE L2 2824 3081 -191 213 286 82 20 chrX 3666569 3666667 -173307473 - MIR SINE MIR -54 208 105 1569 185 66 44 chrX 3667347 3667709 -173306431 - MLT1A2 LTR MaLR 0 374 5 5705 84 1 1 chrX 3667757 3668448 -173305692 - LTR8 LTR ERV1 0 691 1 207 0 0 0 chrX 3669031 3669054 -173305086 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 2865 92 19 17 chrX 3669054 3669459 -173304681 - L1PA10 LINE L1 -17 6151 5743 1412 232 92 22 chrX 3669582 3669807 -173304333 - MSTD LTR MaLR 0 396 133 2152 95 0 3 chrX 3669807 3670141 -173303999 + AluSg1 SINE Alu 1 333 0 1412 232 92 22 chrX 3670141 3670284 -173303856 - MSTD LTR MaLR -263 133 1 1870 161 17 0 chrX 3670299 3670598 -173303542 + AluJo SINE Alu 1 304 -8 2217 121 0 6 chrX 3670598 3670912 -173303228 + AluSx SINE Alu 1 312 0 402 250 169 7 chrX 3671358 3671506 -173302634 + MLT1J1 LTR MaLR 3 174 -272 263 209 48 48 chrX 3671732 3671837 -173302303 + MLT1J1 LTR MaLR 342 446 0 4157 156 11 0 chrX 3671972 3672600 -173301540 - MER41B LTR ERV1 0 635 1 1906 140 0 11 chrX 3672769 3673047 -173301093 + AluSx SINE Alu 2 276 -36 1209 270 108 14 chrX 3673146 3673329 -173300811 + L1MC4 LINE L1 6468 6632 -1410 3551 146 47 17 chrX 3673329 3673931 -173300209 + LTR29 LTR ERV1 1 620 -2 1209 270 108 14 chrX 3673931 3674247 -173299893 + L1MC4 LINE L1 6632 7014 -1028 2245 79 3 8 chrX 3674249 3674610 -173299530 + LTR7 LTR ERV1 1 448 -2 237 247 0 54 chrX 3674612 3674705 -173299435 + L1MC4 LINE L1 7012 7099 -943 * 240 212 15 15 chrX 3674676 3674742 -173299398 + L1MC4a LINE L1 7152 7217 -591 1577 71 5 0 chrX 3674742 3674940 -173299200 + MLT2A2 LTR ERVL 1 199 -254 3153 62 2 107 chrX 3674942 3675292 -173298848 + MLT2A1 LTR ERVL 1 386 -58 2745 85 8 3 chrX 3675292 3675645 -173298495 + THE1A LTR MaLR 1 355 0 3153 62 2 107 chrX 3675645 3675709 -173298431 + MLT2A1 LTR ERVL 386 358 -86 2375 87 3 0 chrX 3675709 3676009 -173298131 - AluSp SINE Alu -12 301 1 3153 62 2 107 chrX 3676009 3676089 -173298051 + MLT2A1 LTR ERVL 357 444 0 1112 132 22 7 chrX 3676089 3676404 -173297736 + MLT2A2 LTR ERVL 197 449 -4 330 232 0 0 chrX 3676408 3676477 -173297663 + L1MC3 LINE L1 7200 7268 -517 1318 138 24 55 chrX 3676762 3677016 -173297124 - LTR8 LTR ERV1 0 691 446 3117 136 25 34 chrX 3677019 3677549 -173296591 - MER61E LTR ERV1 -44 525 1 2798 129 4 62 chrX 3677549 3678031 -173296109 - LTR8 LTR ERV1 -237 454 1 2068 92 13 46 chrX 3678064 3678370 -173295770 - AluSq SINE Alu -15 298 3 387 279 43 63 chrX 3678727 3678981 -173295159 + L1M4 LINE L1 4399 4647 -1499 195 277 0 0 chrX 3679217 3679282 -173294858 + (TA)n Simple_repeat Simple_repeat 1 65 0 3433 148 33 11 chrX 3679743 3680285 -173293855 + MER41C LTR ERV1 1 554 0 1763 204 29 34 chrX 3680589 3681006 -173293134 - L1MB8 LINE L1 -37 6141 5727 1669 265 91 28 chrX 3680997 3681647 -173292493 - L1MB8 LINE L1 -1433 4713 4023 * 21 0 0 0 chrX 3681995 3682016 -173292124 + AT_rich Low_complexity Low_complexity 1 21 0 1621 159 61 3 chrX 3682937 3683268 -173290872 - AluJb SINE Alu 0 348 1 1546 169 83 4 chrX 3683954 3684405 -173289735 - AluJb SINE Alu 0 472 1 3015 129 11 23 chrX 3684489 3684962 -173289178 + L1PA16 LINE L1 5697 6163 -3 613 235 6 6 chrX 3685420 3685578 -173288562 + MLT2C2 LTR ERVL 6 163 -301 1935 170 37 10 chrX 3685578 3685934 -173288206 - MLT1A1 LTR MaLR 0 365 1 663 180 9 0 chrX 3685936 3686047 -173288093 + MLT2C2 LTR ERVL 161 272 -192 883 151 33 0 chrX 3686047 3686199 -173287941 - L1P4 LINE L1 -545 5621 5465 376 296 46 20 chrX 3686203 3686355 -173287785 + L1ME LINE L1 5611 5766 -355 2185 209 27 8 chrX 3686645 3687131 -173287009 + L1MC2 LINE L1 6119 7658 -95 2362 121 36 33 chrX 3687646 3688009 -173286131 - THE1B LTR MaLR 0 364 1 204 348 54 0 chrX 3688325 3688417 -173285723 + MIR3 SINE MIR 112 208 0 246 265 0 15 chrX 3688689 3688757 -173285383 + A-rich Low_complexity Low_complexity 3 69 0 1092 225 21 8 chrX 3688770 3689010 -173285130 + MLT1D LTR MaLR 261 503 -2 232 292 42 0 chrX 3689642 3689714 -173284426 + MER5A DNA MER1_type 1 75 -114 1312 197 4 8 chrX 3689716 3689970 -173284170 + AluJo SINE Alu 46 298 -14 256 159 48 0 chrX 3690194 3690257 -173283883 + L1MC4 LINE L1 6640 6705 -1337 1308 117 0 0 chrX 3690429 3690600 -173283540 + AluSq SINE Alu 21 191 -122 356 0 23 0 chrX 3690752 3690796 -173283344 + (TA)n Simple_repeat Simple_repeat 1 45 0 2805 93 11 16 chrX 3692036 3692413 -173281727 + THE1C LTR MaLR 1 375 0 257 283 0 33 chrX 3694350 3694442 -173279698 - L1MC4 LINE L1 -1339 6703 6615 459 92 0 0 chrX 3695021 3695086 -173279054 + (T)n Simple_repeat Simple_repeat 1 65 0 208 85 43 43 chrX 3695264 3695311 -173278829 + A-rich Low_complexity Low_complexity 5 51 0 317 335 188 0 chrX 3698983 3699153 -173274987 + MIR SINE MIR 1 202 -60 220 315 134 20 chrX 3699420 3699569 -173274571 + MIR SINE MIR 47 212 -50 228 250 0 0 chrX 3699789 3699849 -173274291 + (TA)n Simple_repeat Simple_repeat 2 61 0 274 355 44 40 chrX 3700330 3700581 -173273559 - L2 LINE L2 -467 2847 2596 233 128 21 0 chrX 3700623 3700670 -173273470 + GA-rich Low_complexity Low_complexity 4 51 0 971 180 120 0 chrX 3700894 3701077 -173273063 + AluJb SINE Alu 92 296 -16 217 398 8 16 chrX 3701958 3702086 -173272054 - MER5A DNA MER1_type 0 189 63 222 222 0 0 chrX 3703531 3703621 -173270519 + (TA)n Simple_repeat Simple_repeat 1 90 0 298 298 11 6 chrX 3704759 3704937 -173269203 + (TA)n Simple_repeat Simple_repeat 1 179 0 201 167 0 0 chrX 3704950 3705004 -173269136 + (TA)n Simple_repeat Simple_repeat 1 54 0 400 231 186 77 chrX 3705693 3705849 -173268291 + MER5A DNA MER1_type 11 183 -6 1208 151 0 0 chrX 3706264 3706449 -173267691 - AluJo SINE Alu -10 302 118 473 52 0 0 chrX 3706457 3706515 -173267625 + MADE1 DNA Mariner 22 79 -1 603 225 0 17 chrX 3706518 3706638 -173267502 - AluJo SINE Alu -184 118 1 1545 223 74 28 chrX 3706654 3707084 -173267056 - MLT1C LTR MaLR 0 467 18 242 118 0 0 chrX 3707431 3707465 -173266675 + MER53 DNA DNA 1 34 -155 259 259 35 0 chrX 3707476 3707561 -173266579 - MER53 DNA DNA -66 123 36 2118 134 0 3 chrX 3707561 3707866 -173266274 + AluSx SINE Alu 1 304 -8 308 292 42 73 chrX 3708330 3708418 -173265722 - L1MC/D LINE L1 -747 5399 5310 2111 115 0 0 chrX 3708418 3708706 -173265434 - L1PA13 LINE L1 -3 6160 5873 308 292 42 73 chrX 3708706 3709288 -173264852 - L1MC/D LINE L1 -836 5310 4775 1864 125 80 0 chrX 3709303 3709592 -173264548 - AluSx SINE Alu 0 312 1 669 166 0 0 chrX 3709831 3709976 -173264164 + GA-rich Low_complexity Low_complexity 1 145 0 180 77 0 0 chrX 3710747 3710773 -173263367 + (ATGGTG)n Simple_repeat Simple_repeat 3 28 0 22 56 0 0 chrX 3711309 3711345 -173262795 + AT_rich Low_complexity Low_complexity 1 36 0 1828 142 76 0 chrX 3712359 3712634 -173261506 - AluSg SINE Alu -14 296 1 991 142 108 48 chrX 3713623 3713764 -173260376 - L1MA8 LINE L1 -5 6286 6155 3125 88 12 2 chrX 3713764 3714194 -173259946 - MER57B LTR ERV1 0 434 1 991 142 108 48 chrX 3714194 3714320 -173259820 - L1MA8 LINE L1 -136 6155 6003 427 90 30 0 chrX 3714321 3714388 -173259752 + L1MA8 LINE L1 5908 5976 -336 656 238 83 0 chrX 3714761 3714942 -173259198 - MER58A DNA MER1_type 0 224 29 597 302 87 8 chrX 3715690 3715932 -173258208 + MIR SINE MIR 2 262 0 300 229 0 0 chrX 3719535 3719605 -173254535 - MER103 DNA DNA -87 79 10 358 359 48 7 chrX 3721787 3722060 -173252080 - L1MEd LINE L1 -3716 2413 2130 233 262 0 24 chrX 3722609 3722693 -173251447 - HAL1 LINE L1 -922 1585 1504 485 99 0 0 chrX 3722978 3723049 -173251091 - Alu SINE Alu -12 300 230 1135 172 0 0 chrX 3723049 3723229 -173250911 - AluJo SINE Alu -132 180 1 359 272 80 25 chrX 3723241 3723403 -173250737 - L1MEd LINE L1 -5017 1102 932 320 343 71 26 chrX 3723581 3724004 -173250136 - L1MEd LINE L1 -5300 819 378 303 337 94 30 chrX 3724159 3724361 -173249779 - L1MEd LINE L1 -5901 218 4 994 142 0 0 chrX 3725604 3725745 -173248395 - FRAM SINE Alu -24 152 12 1658 153 53 7 chrX 3725763 3726045 -173248095 - AluJo SINE Alu -17 295 1 1189 153 44 48 chrX 3726090 3726338 -173247802 + AluJo SINE Alu 41 287 -25 285 67 22 0 chrX 3727425 3727470 -173246670 + MADE1 DNA Mariner 1 46 -34 369 0 0 0 chrX 3728021 3728062 -173246078 + (CA)n Simple_repeat Simple_repeat 2 42 0 243 0 0 0 chrX 3728061 3728088 -173246052 + (TA)n Simple_repeat Simple_repeat 1 27 0 * 180 0 0 0 chrX 3728549 3728569 -173245571 + (TG)n Simple_repeat Simple_repeat 1 20 0 336 24 0 0 chrX 3728572 3728613 -173245527 + (TA)n Simple_repeat Simple_repeat 1 41 0 21 0 0 0 chrX 3729434 3729455 -173244685 + AT_rich Low_complexity Low_complexity 1 21 0 762 253 98 83 chrX 3729544 3729991 -173244149 - MER20B DNA MER1_type -140 643 190 273 309 45 54 chrX 3729992 3730215 -173243925 - MER20B DNA MER1_type -553 230 10 985 105 0 0 chrX 3730405 3730529 -173243611 - AluSq/x SINE Alu -188 124 1 25 0 0 0 chrX 3730769 3730794 -173243346 + AT_rich Low_complexity Low_complexity 1 25 0 7783 30 1 1 chrX 3730840 3731737 -173242403 - MER11D LTR ERVK 0 897 1 1394 259 188 37 chrX 3731973 3732889 -173241251 + Charlie1 DNA MER1_type 2 2353 -408 2485 142 34 5 chrX 3733194 3733610 -173240530 - MSTA LTR MaLR 0 428 1 2091 127 7 10 chrX 3733832 3734140 -173240000 - AluSx SINE Alu -5 307 1 3909 179 42 23 chrX 3734140 3735018 -173239122 - L1MC1 LINE L1 -6 6327 5433 1945 186 13 5 chrX 3735110 3735492 -173238648 + MLT1B LTR MaLR 6 390 0 2547 51 0 0 chrX 3735524 3735819 -173238321 - AluY SINE Alu -16 295 1 23 54 0 0 chrX 3735950 3735987 -173238153 + AT_rich Low_complexity Low_complexity 1 37 0 2059 67 82 0 chrX 3736275 3736557 -173237583 - AluY SINE Alu -6 305 1 392 291 44 25 chrX 3737973 3738131 -173236009 + LTR16A1 LTR ERVL 7 167 -290 267 246 0 0 chrX 3738192 3738257 -173235883 + LTR16A1 LTR ERVL 392 456 -1 370 308 70 42 chrX 3739241 3739455 -173234685 + MIR SINE MIR 9 228 -34 298 132 66 59 chrX 3739501 3739637 -173234503 + (TCTA)n Simple_repeat Simple_repeat 2 138 0 273 29 0 0 chrX 3739651 3739685 -173234455 + (TC)n Simple_repeat Simple_repeat 1 34 0 386 225 36 0 chrX 3739688 3739799 -173234341 - L1MC4 LINE L1 -1314 6728 6614 347 0 0 23 chrX 3739842 3739886 -173234254 + (CA)n Simple_repeat Simple_repeat 2 44 0 249 93 56 0 chrX 3740925 3740979 -173233161 + (TAGA)n Simple_repeat Simple_repeat 4 60 0 536 90 41 28 chrX 3741011 3741156 -173232984 + (TAGA)n Simple_repeat Simple_repeat 4 150 0 331 318 120 11 chrX 3741249 3741623 -173232517 - L1ME LINE L1 -388 5765 5351 265 267 11 0 chrX 3741712 3741802 -173232338 + (TA)n Simple_repeat Simple_repeat 2 92 0 343 290 76 37 chrX 3741945 3742352 -173231788 - L1ME LINE L1 -1031 5098 4676 29 90 0 0 chrX 3742360 3742438 -173231702 + AT_rich Low_complexity Low_complexity 1 78 0 390 279 73 46 chrX 3742656 3743248 -173230892 - L1ME LINE L1 -4866 1253 646 255 279 13 0 chrX 3743791 3743870 -173230270 - L1ME LINE L1 -6011 108 29 595 300 112 11 chrX 3744124 3744411 -173229729 + L2 LINE L2 2994 3309 -4 2093 135 3 3 chrX 3744574 3744871 -173229269 + AluSx SINE Alu 1 297 -15 240 35 0 0 chrX 3744871 3744900 -173229240 + (TA)n Simple_repeat Simple_repeat 1 29 0 289 270 6 6 chrX 3744921 3745099 -173229041 + (TATATG)n Simple_repeat Simple_repeat 3 180 0 374 257 0 12 chrX 3745115 3745286 -173228854 + (TATATG)n Simple_repeat Simple_repeat 2 170 0 299 298 0 0 chrX 3745286 3745380 -173228760 + (TA)n Simple_repeat Simple_repeat 2 95 0 26 82 0 0 chrX 3745426 3745487 -173228653 + AT_rich Low_complexity Low_complexity 1 61 0 1294 149 57 50 chrX 3745573 3745835 -173228305 - AluJo SINE Alu -48 264 1 180 167 56 74 chrX 3745956 3746010 -173228130 + L3b LINE CR1 1250 1302 -281 22 0 0 0 chrX 3746462 3746484 -173227656 + AT_rich Low_complexity Low_complexity 1 22 0 1782 175 0 46 chrX 3746543 3746869 -173227271 - AluJb SINE Alu -1 311 1 730 213 23 50 chrX 3748552 3748756 -173225384 + L1MB2 LINE L1 5851 6050 -121 1758 178 3 33 chrX 3748756 3749055 -173225085 + L1PA15 LINE L1 5816 6104 -61 1808 133 67 25 chrX 3749055 3749415 -173224725 - THE1C LTR MaLR 0 375 1 1758 178 3 33 chrX 3749415 3749475 -173224665 + L1PA15 LINE L1 6104 6164 -1 730 213 23 50 chrX 3749475 3749491 -173224649 + L1MB2 LINE L1 6050 6065 -106 434 167 39 10 chrX 3749491 3749593 -173224547 + L1MB3 LINE L1 6078 6182 -1 1886 147 48 0 chrX 3749836 3750128 -173224012 - AluJb SINE Alu -2 310 5 265 263 0 18 chrX 3751167 3751224 -173222916 + MER58 DNA MER1_type 1 56 -2364 3047 103 33 2 chrX 3751268 3751724 -173222416 + L1PA13 LINE L1 5692 6161 -2 240 195 49 98 chrX 3751732 3751814 -173222326 + MER58 DNA MER1_type 2318 2395 -25 187 215 0 21 chrX 3753310 3753403 -173220737 + CT-rich Low_complexity Low_complexity 1 91 0 2313 111 33 18 chrX 3753432 3753828 -173220312 + L1MA2 LINE L1 5903 6304 0 279 62 24 7 chrX 3753854 3753904 -173220236 - MLT2C2 LTR ERVL -6 458 399 302 238 16 16 chrX 3753932 3754058 -173220082 + (CATA)n Simple_repeat Simple_repeat 1 126 0 314 258 0 43 chrX 3754069 3754162 -173219978 + L1MC4 LINE L1 6614 6702 -1340 230 191 0 32 chrX 3754165 3754228 -173219912 + (CATATA)n Simple_repeat Simple_repeat 6 66 0 375 62 234 0 chrX 3754228 3754292 -173219848 + MADE1 DNA Mariner 1 79 -1 1382 196 64 57 chrX 3754327 3754623 -173219517 - MLT2C2 LTR ERVL -73 391 90 1485 171 23 48 chrX 3754623 3754933 -173219207 + AluJo SINE Alu 1 302 -10 1382 196 64 57 chrX 3754933 3755024 -173219116 - MLT2C2 LTR ERVL -374 90 1 809 120 0 0 chrX 3755059 3755184 -173218956 - L1PB3 LINE L1 -1 6153 6029 3739 107 20 118 chrX 3755284 3756123 -173218017 - L1PB3 LINE L1 -121 6033 5277 1016 234 75 51 chrX 3756752 3757210 -173216930 - MLT1C LTR MaLR -1 466 1 298 230 115 22 chrX 3757221 3757360 -173216780 - MLT1C LTR MaLR -124 343 192 1881 116 53 11 chrX 3757625 3757910 -173216230 - AluJo SINE Alu -15 297 1 438 255 99 36 chrX 3760788 3760961 -173213179 + MER20 DNA MER1_type 12 200 -19 4104 102 30 19 chrX 3760961 3761589 -173212551 - MER41B LTR ERV1 0 635 1 438 255 99 36 chrX 3761589 3761607 -173212533 + MER20 DNA MER1_type 200 215 -4 266 361 30 0 chrX 3762586 3762719 -173211421 + MIR3 SINE MIR 65 201 -7 203 217 29 0 chrX 3762890 3762959 -173211181 + (TA)n Simple_repeat Simple_repeat 1 71 0 1883 210 40 9 chrX 3762981 3763411 -173210729 - MLT2B2 LTR ERVL -39 515 3 1881 157 10 3 chrX 3764578 3764877 -173209263 - AluSx SINE Alu -11 301 1 2222 115 0 3 chrX 3765459 3765754 -173208386 - AluSx SINE Alu -18 294 1 512 131 0 0 chrX 3765980 3766064 -173208076 + L1MA2 LINE L1 6161 6244 -60 2165 134 0 0 chrX 3767841 3768183 -173205957 - AluSx SINE Alu 0 342 1 211 338 188 4 chrX 3768736 3769002 -173205138 + L2 LINE L2 2566 2880 -434 221 298 61 44 chrX 3769062 3769176 -173204964 + MER5A DNA MER1_type 74 189 0 267 54 0 0 chrX 3770971 3771008 -173203132 + (CAAAC)n Simple_repeat Simple_repeat 3 39 0 559 200 15 7 chrX 3771250 3771385 -173202755 - L1MB7 LINE L1 -218 5966 5831 230 216 82 0 chrX 3771385 3771482 -173202658 + (TA)n Simple_repeat Simple_repeat 2 106 0 3646 131 35 11 chrX 3771990 3772342 -173201798 + L1MC1 LINE L1 5693 6068 -265 373 88 176 0 chrX 3772342 3772410 -173201730 - MADE1 DNA Mariner 0 80 1 3646 131 35 11 chrX 3772410 3772681 -173201459 + L1MC1 LINE L1 6068 6331 -2 381 225 0 0 chrX 3772822 3772902 -173201238 + L1MC1 LINE L1 6240 6319 -14 1899 155 39 130 chrX 3772925 3773349 -173200791 + L1PA16 LINE L1 5651 6013 -153 2696 38 0 0 chrX 3773349 3773667 -173200473 + AluYb8 SINE Alu 1 318 0 1899 155 39 130 chrX 3773667 3773804 -173200336 + L1PA16 LINE L1 6013 6161 -5 22 0 0 0 chrX 3775427 3775449 -173198691 + AT_rich Low_complexity Low_complexity 1 22 0 183 330 80 57 chrX 3775941 3776117 -173198023 - L2 LINE L2 -268 3004 2825 1073 158 0 0 chrX 3776132 3776296 -173197844 + FRAM SINE Alu 1 163 -13 244 244 26 39 chrX 3776346 3776424 -173197716 + L2 LINE L2 2691 2767 -547 2353 125 100 5 chrX 3776428 3776819 -173197321 + MSTA LTR MaLR 1 428 0 194 232 18 0 chrX 3777109 3777165 -173196975 - L2 LINE L2 -1730 1584 1528 526 138 0 0 chrX 3777262 3777342 -173196798 - MADE1 DNA Mariner 0 80 1 360 273 114 11 chrX 3777613 3777789 -173196351 - L1MB7 LINE L1 -302 5819 5626 192 370 50 0 chrX 3778888 3778988 -173195152 + L2 LINE L2 3206 3310 -3 1955 105 42 27 chrX 3779680 3780013 -173194127 + THE1B LTR MaLR 1 338 -26 323 0 0 0 chrX 3780039 3780076 -173194064 + THE1B LTR MaLR 319 355 0 4990 107 8 16 chrX 3780766 3781025 -173193115 - L1PA13 LINE L1 -4 6159 5899 2410 60 13 10 chrX 3781025 3781326 -173192814 + AluY SINE Alu 1 302 -9 4990 107 8 16 chrX 3781326 3781861 -173192279 - L1PA13 LINE L1 -264 5899 5372 377 293 148 33 chrX 3781869 3782139 -173192001 + HAL1b LINE L1 172 472 -876 400 252 62 78 chrX 3782190 3782563 -173191577 + HAL1b LINE L1 581 947 -401 5387 133 4 13 chrX 3782789 3783698 -173190442 - L1PA13 LINE L1 0 6163 5263 1984 212 19 33 chrX 3784157 3784642 -173189498 - LTR31 LTR ERV1 -15 604 127 1707 110 0 0 chrX 3785869 3786097 -173188043 + AluSc SINE Alu 73 300 -9 3261 82 22 2 chrX 3786209 3786661 -173187479 + L1PA10 LINE L1 5695 6155 -13 199 359 0 0 chrX 3787484 3787548 -173186592 - L2 LINE L2 0 3272 3209 2250 81 3 0 chrX 3787753 3788038 -173186102 + AluY SINE Alu 1 286 -25 216 0 0 0 chrX 3788041 3788065 -173186075 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 890 118 0 7 chrX 3788182 3788326 -173185814 + (TTC)n Simple_repeat Simple_repeat 3 145 0 652 183 0 9 chrX 3788328 3788443 -173185697 - FLAM_C SINE Alu -29 114 1 362 214 15 20 chrX 3788463 3788660 -173185480 + CT-rich Low_complexity Low_complexity 1 195 0 376 329 76 8 chrX 3789467 3789652 -173184488 + MIR SINE MIR 15 212 -50 2170 119 23 52 chrX 3789724 3790110 -173184030 - THE1C LTR MaLR 0 375 1 282 301 29 10 chrX 3790807 3790910 -173183230 + MIR3 SINE MIR 87 191 -17 1759 234 59 25 chrX 3791292 3791780 -173182360 + MLT1D LTR MaLR 1 505 0 2217 59 42 3 chrX 3792859 3793148 -173180992 + AluY SINE Alu 1 300 -11 24 32 0 0 chrX 3793721 3793752 -173180388 + AT_rich Low_complexity Low_complexity 1 31 0 198 263 147 21 chrX 3794539 3794635 -173179505 + MIR SINE MIR 63 171 -37 386 176 0 0 chrX 3794671 3794745 -173179395 - MADE1 DNA Mariner 0 80 7 372 222 94 26 chrX 3794916 3795033 -173179107 + L2 LINE L2 3189 3313 0 385 242 91 0 chrX 3795036 3795135 -173179005 + MER3 DNA MER1_type 1 108 -101 1683 112 28 17 chrX 3795148 3795435 -173178705 - THE1C LTR MaLR 0 375 86 278 115 19 0 chrX 3795551 3795603 -173178537 + (TA)n Simple_repeat Simple_repeat 1 53 0 534 213 0 55 chrX 3796254 3796381 -173177759 - FLAM_A SINE Alu -9 133 14 1093 235 4 16 chrX 3796917 3797168 -173176972 - AluJo SINE Alu -24 288 41 225 278 81 40 chrX 3797182 3797380 -173176760 - L1M4 LINE L1 -1200 4946 4741 2068 155 0 0 chrX 3797726 3798035 -173176105 + AluJo SINE Alu 1 309 -3 181 191 0 48 chrX 3798141 3798204 -173175936 + GA-rich Low_complexity Low_complexity 2 61 0 257 73 0 24 chrX 3798808 3798849 -173175291 + (TAA)n Simple_repeat Simple_repeat 2 41 0 978 206 42 35 chrX 3798985 3799173 -173174967 + MER33 DNA MER1_type 5 197 -2388 2502 148 21 23 chrX 3799173 3799606 -173174534 - Tigger2a DNA MER2_type -1 433 2 978 206 42 35 chrX 3799606 3799727 -173174413 + MER33 DNA MER1_type 197 316 -8 987 411 0 48 chrX 3799763 3800079 -173174061 + AluJo SINE Alu 1 301 -1 1578 222 128 18 chrX 3800270 3800600 -173173540 + MLT1D LTR MaLR 1 396 -109 3632 128 22 21 chrX 3800600 3800971 -173173169 + L1PA16 LINE L1 5535 5909 -257 2104 114 19 56 chrX 3800971 3801349 -173172791 + THE1B LTR MaLR 1 364 0 3632 128 22 21 chrX 3801349 3801608 -173172532 + L1PA16 LINE L1 5909 6166 0 1578 222 128 18 chrX 3801608 3801732 -173172408 + MLT1D LTR MaLR 396 505 0 505 313 7 0 chrX 3801826 3801970 -173172170 - MER63A DNA MER1_type -9 201 57 510 303 0 13 chrX 3802896 3803048 -173171092 + MER63 DNA MER1_type 10 785 -277 4498 137 31 22 chrX 3803149 3804010 -173170130 + L1PB4 LINE L1 5276 6144 -12 26 0 0 0 chrX 3804137 3804163 -173169977 + AT_rich Low_complexity Low_complexity 1 26 0 201 39 0 0 chrX 3805041 3805067 -173169073 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 637 249 15 34 chrX 3806349 3806554 -173167586 - MER20 DNA MER1_type -3 216 16 1868 135 56 31 chrX 3806820 3807175 -173166965 + THE1B LTR MaLR 1 364 0 2143 118 0 14 chrX 3807468 3807764 -173166376 + AluSx SINE Alu 1 292 -20 229 163 82 0 chrX 3808319 3808368 -173165772 - LTR16A1 LTR ERVL 0 457 405 441 259 0 17 chrX 3808383 3808499 -173165641 - MIR SINE MIR 0 262 149 1653 197 15 6 chrX 3808500 3808840 -173165300 - L1PB4 LINE L1 -6 6150 5808 798 73 0 0 chrX 3808844 3808954 -173165186 + (TTTC)n Simple_repeat Simple_repeat 3 112 0 350 205 3 0 chrX 3809684 3809759 -173164381 - L1M3 LINE L1 -355 5811 5735 21 0 0 0 chrX 3810147 3810168 -173163972 + AT_rich Low_complexity Low_complexity 1 21 0 335 236 28 0 chrX 3810311 3810383 -173163757 + MER58A DNA MER1_type 3 76 -31 195 307 68 34 chrX 3810549 3810637 -173163503 - MIR SINE MIR -63 145 55 1596 200 13 27 chrX 3811433 3811733 -173162407 + AluJo SINE Alu 1 296 -16 1456 183 173 90 chrX 3812509 3813287 -173160853 - LTR1B LTR ERV1 0 1020 1 1686 191 10 0 chrX 3814200 3814488 -173159652 + AluJb SINE Alu 1 291 -21 287 299 114 30 chrX 3814937 3815104 -173159036 - MIR SINE MIR -30 232 52 439 324 0 7 chrX 3818974 3819119 -173155021 + (CATATA)n Simple_repeat Simple_repeat 4 147 0 615 256 0 0 chrX 3819129 3819305 -173154835 + (TA)n Simple_repeat Simple_repeat 2 177 0 661 218 111 70 chrX 3819387 3819818 -173154322 + L1MC4 LINE L1 7447 7895 -147 290 200 47 0 chrX 3819827 3819912 -173154228 + (TA)n Simple_repeat Simple_repeat 2 90 0 391 197 24 39 chrX 3819941 3820068 -173154072 + L1MC4 LINE L1 7918 8042 0 207 350 14 70 chrX 3820361 3820504 -173153636 + MIR3 SINE MIR 2 136 -72 1183 139 8 48 chrX 3820701 3820953 -173153187 - L1MA5A LINE L1 -2 6295 6054 3027 23 0 0 chrX 3821444 3821795 -173152345 - L1PA4 LINE L1 -3 6152 5802 1525 217 15 35 chrX 3822300 3822756 -173151384 + L1MB8 LINE L1 5727 6173 -5 215 271 0 0 chrX 3823510 3823558 -173150582 + (TA)n Simple_repeat Simple_repeat 2 49 0 467 110 0 0 chrX 3823905 3823978 -173150162 - L1PA16 LINE L1 -3 6163 6091 1055 255 143 37 chrX 3824102 3824611 -173149529 + MLT1E LTR MaLR 19 581 -12 1758 161 28 24 chrX 3824613 3824904 -173149236 + AluJo SINE Alu 1 292 -20 753 157 8 15 chrX 3825357 3825491 -173148649 + AluJ SINE Alu 1 133 -179 736 188 8 0 chrX 3825886 3826014 -173148126 + FLAM_A SINE Alu 1 129 -4 189 350 51 35 chrX 3826127 3826312 -173147828 - MIR SINE MIR -17 245 57 2198 128 0 0 chrX 3826823 3827119 -173147021 + AluSx SINE Alu 1 296 -16 1741 160 23 23 chrX 3827220 3827564 -173146576 - MLT1B LTR MaLR -46 344 1 306 123 0 0 chrX 3828005 3828062 -173146078 + (GA)n Simple_repeat Simple_repeat 2 58 0 387 217 66 0 chrX 3828707 3828813 -173145327 + L1MB8 LINE L1 6060 6172 -6 231 180 0 0 chrX 3828816 3828826 -173145314 + (TA)n Simple_repeat Simple_repeat 1 10 -40 3001 58 3 0 chrX 3828826 3829207 -173144933 - L1PA7 LINE L1 -7 6147 5766 231 180 0 0 chrX 3829207 3829246 -173144894 + (TA)n Simple_repeat Simple_repeat 9 50 0 402 327 105 34 chrX 3829513 3829895 -173144245 - L1ME LINE L1 -446 5675 5267 27 29 0 0 chrX 3830469 3830503 -173143637 + AT_rich Low_complexity Low_complexity 1 34 0 250 83 0 0 chrX 3830919 3830955 -173143185 - MADE1 DNA Mariner 0 80 45 325 292 42 31 chrX 3831086 3831278 -173142862 + L1ME LINE L1 5064 5257 -889 349 336 16 8 chrX 3831285 3831529 -173142611 + L1ME LINE L1 5263 5508 -656 703 239 24 24 chrX 3831536 3831745 -173142395 + MER3 DNA MER1_type 1 209 0 1025 139 63 0 chrX 3831869 3832027 -173142113 + AluJ SINE Alu 141 308 -4 922 98 50 7 chrX 3832167 3832433 -173141707 + GA-rich Low_complexity Low_complexity 1 277 0 249 98 0 0 chrX 3832702 3832743 -173141397 + (CA)n Simple_repeat Simple_repeat 1 41 0 1209 196 158 117 chrX 3832760 3833573 -173140567 - LTR1B LTR ERV1 0 1020 1 531 194 78 0 chrX 3834428 3834531 -173139609 - AluJo SINE Alu -21 291 181 719 206 28 39 chrX 3834631 3834811 -173139329 - AluJo SINE Alu -132 180 3 574 182 0 0 chrX 3834844 3834954 -173139186 - L1MB1 LINE L1 -40 6128 6019 963 254 103 67 chrX 3835391 3835898 -173138242 - MLT1E2 LTR MaLR -22 604 80 421 144 39 19 chrX 3836288 3836392 -173137748 + MER4C LTR ERV1 1 106 -359 547 192 45 81 chrX 3836478 3836747 -173137393 + LTR59 LTR ERV1 136 377 -220 * 619 234 108 73 chrX 3836746 3837063 -173137077 + MER4C LTR ERV1 276 465 0 213 276 17 0 chrX 3837335 3837393 -173136747 + L2 LINE L2 3250 3308 -5 350 258 0 0 chrX 3838154 3838251 -173135889 - MLT1E2 LTR MaLR 0 626 530 835 176 0 121 chrX 3838251 3838450 -173135690 + AluJo SINE Alu 86 260 -52 1758 257 15 39 chrX 3838504 3838960 -173135180 - MLT1E2 LTR MaLR -98 528 85 1875 152 35 70 chrX 3838960 3839362 -173134778 - MLT1B LTR MaLR 0 390 3 1758 257 15 39 chrX 3839362 3839446 -173134694 - MLT1E2 LTR MaLR -541 85 1 2184 119 20 0 chrX 3839656 3839951 -173134189 - AluSx SINE Alu -9 303 3 333 0 0 0 chrX 3840001 3840038 -173134102 + (A)n Simple_repeat Simple_repeat 1 37 0 600 271 35 15 chrX 3840131 3840334 -173133806 - MER3 DNA MER1_type 0 209 3 870 238 5 0 chrX 3841927 3842116 -173132024 - MER58A DNA MER1_type 0 224 35 2751 194 91 56 chrX 3842141 3842957 -173131183 - MER21B LTR ERV1 -19 844 1 225 29 0 59 chrX 3843810 3843844 -173130296 - L1P4 LINE L1 -439 5724 5693 1091 218 153 0 chrX 3844175 3844436 -173129704 - AluJo SINE Alu -1 311 11 1033 186 134 0 chrX 3844472 3844666 -173129474 - AluJo SINE Alu -92 220 1 184 328 0 30 chrX 3845080 3845147 -173128993 - MIR SINE MIR -73 189 125 1450 184 26 45 chrX 3845201 3845511 -173128629 + AluJo SINE Alu 1 304 -8 35 0 0 0 chrX 3845569 3845604 -173128536 + AT_rich Low_complexity Low_complexity 1 35 0 406 287 109 17 chrX 3845665 3845839 -173128301 + MIR SINE MIR 59 248 -14 396 288 30 0 chrX 3845853 3845985 -173128155 - L2 LINE L2 -1018 2296 2161 1945 163 40 36 chrX 3846019 3846568 -173127572 - MLT2A2 LTR ERVL 0 554 1 1184 249 31 62 chrX 3846716 3847015 -173127125 - MLT1C LTR MaLR 0 467 160 1932 134 0 23 chrX 3847015 3847146 -173126994 + AluSx SINE Alu 1 133 -179 450 94 0 0 chrX 3847146 3847210 -173126930 + (TA)n Simple_repeat Simple_repeat 2 65 0 2369 87 0 3 chrX 3847218 3847516 -173126624 + AluSx SINE Alu 5 301 -11 1932 134 0 23 chrX 3847516 3847682 -173126458 + AluSx SINE Alu 140 300 -12 1184 249 31 62 chrX 3847682 3847864 -173126276 - MLT1C LTR MaLR -307 160 1 2470 62 0 0 chrX 3849577 3849869 -173124271 + AluY SINE Alu 1 292 -19 883 218 50 50 chrX 3849967 3850035 -173124105 + MER58B DNA MER1_type 79 146 -2274 3863 145 35 22 chrX 3850035 3850752 -173123388 + L1MC1 LINE L1 5606 6331 -2 883 218 50 50 chrX 3850752 3850945 -173123195 + MER58B DNA MER1_type 145 340 -1 874 264 123 36 chrX 3851417 3851529 -173122611 + MLT2F LTR ERVL 5 106 -557 4301 153 39 20 chrX 3851529 3852294 -173121846 + LTR39 LTR ERV1 4 783 0 874 264 123 36 chrX 3852294 3852628 -173121512 + MLT2F LTR ERVL 106 490 -173 3126 99 4 25 chrX 3852647 3853122 -173121018 + MER4C LTR ERV1 1 465 0 1595 213 71 69 chrX 3853657 3854292 -173119848 - MER92B LTR ERV1 0 636 1 261 0 0 0 chrX 3854370 3854399 -173119741 + (CA)n Simple_repeat Simple_repeat 2 30 0 271 263 38 12 chrX 3854485 3854565 -173119575 - MIR SINE MIR -93 169 88 361 130 30 20 chrX 3856836 3856936 -173117204 + (TA)n Simple_repeat Simple_repeat 1 101 0 358 306 88 26 chrX 3857883 3858076 -173116064 - MIR SINE MIR -43 219 15 1968 159 7 7 chrX 3858377 3858685 -173115455 - AluJo SINE Alu -4 308 1 34 42 0 0 chrX 3858770 3858818 -173115322 + AT_rich Low_complexity Low_complexity 1 48 0 619 208 15 0 chrX 3859072 3859202 -173114938 + MER7A DNA MER2_type 1 130 -216 1401 168 40 0 chrX 3859239 3859513 -173114627 + MER7A DNA MER2_type 63 345 -1 3101 147 29 11 chrX 3859727 3860285 -173113855 + LTR24B LTR ERV1 4 571 -5 340 132 26 66 chrX 3860282 3860358 -173113782 + MLT1D LTR MaLR 13 85 -420 * 1483 204 32 24 chrX 3860637 3861014 -173113126 + MLT1D LTR MaLR 118 497 -8 255 318 24 12 chrX 3861375 3861460 -173112680 + MER5A DNA MER1_type 18 103 -86 440 205 0 41 chrX 3861532 3861673 -173112467 - MER5B DNA MER1_type -1 177 2 231 365 21 21 chrX 3862818 3862963 -173111177 + L2 LINE L2 3169 3313 0 756 191 0 0 chrX 3863249 3863427 -173110713 + (ATG)n Simple_repeat Simple_repeat 2 179 0 664 189 0 38 chrX 3863395 3863580 -173110560 + (ATGGTG)n Simple_repeat Simple_repeat 3 180 0 * 943 180 2 6 chrX 3863576 3864125 -173110015 + (ATG)n Simple_repeat Simple_repeat 1 546 0 809 157 117 5 chrX 3864421 3864618 -173109522 + L1MA8 LINE L1 5822 6040 -251 4397 138 26 21 chrX 3864812 3865616 -173108524 - L1MA4 LINE L1 -1 6299 5492 262 259 0 12 chrX 3865885 3865966 -173108174 - LTR16B LTR ERVL -10 454 375 661 209 5 32 chrX 3866004 3866033 -173108107 - L1MB8 LINE L1 -247 5931 5903 9066 39 2 2 chrX 3866033 3867104 -173107036 + MER11C LTR ERVK 1 1071 0 661 209 5 32 chrX 3867104 3867261 -173106879 - L1MB8 LINE L1 -275 5903 5750 811 310 37 13 chrX 3867719 3868093 -173106047 + L1ME LINE L1 497 879 -5651 379 298 44 25 chrX 3868291 3868449 -173105691 - LTR16A1 LTR ERVL -290 167 7 403 123 0 41 chrX 3868680 3868753 -173105387 - MER41D LTR ERV1 0 557 488 7719 23 0 0 chrX 3868765 3870036 -173104104 - L1PA3 LINE L1 -3 6152 4882 1399 110 5 0 chrX 3870090 3870299 -173103841 - MER41D LTR ERV1 -347 210 1 411 21 0 0 chrX 3870319 3870367 -173103773 + (CA)n Simple_repeat Simple_repeat 1 48 0 710 267 72 52 chrX 3870397 3871262 -173102878 + L1ME LINE L1 1047 1955 -4585 618 100 45 0 chrX 3871564 3871674 -173102466 + L1PA13 LINE L1 6049 6163 0 267 286 112 0 chrX 3871724 3871920 -173102220 + L1ME LINE L1 2525 2742 -3798 331 222 11 22 chrX 3871922 3872012 -173102128 + L1ME2 LINE L1 5656 5744 -420 381 158 105 0 chrX 3872013 3872089 -173102051 + L1M3 LINE L1 5703 5786 -548 * 399 246 45 102 chrX 3872081 3872325 -173101815 + L1ME2 LINE L1 5905 6134 -30 613 90 0 20 chrX 3872349 3872449 -173101691 + (TTCC)n Simple_repeat Simple_repeat 2 99 0 2143 137 0 0 chrX 3872449 3872762 -173101378 - AluSq SINE Alu 0 313 1 212 233 0 0 chrX 3872902 3872945 -173101195 + (TGGA)n Simple_repeat Simple_repeat 3 45 0 332 163 0 25 chrX 3873457 3873537 -173100603 + L1MA4 LINE L1 6222 6299 -1 24 0 0 0 chrX 3873539 3873563 -173100577 + AT_rich Low_complexity Low_complexity 1 24 0 2004 140 0 23 chrX 3874297 3874604 -173099536 - AluSx SINE Alu -12 300 1 1376 147 23 34 chrX 3875333 3875599 -173098541 - LTR8 LTR ERV1 0 691 429 1500 141 7 46 chrX 3875620 3875904 -173098236 - LTR8 LTR ERV1 -418 273 1 270 0 0 0 chrX 3876110 3876140 -173098000 + (CA)n Simple_repeat Simple_repeat 2 31 0 541 259 30 51 chrX 3876371 3876568 -173097572 - MIR SINE MIR 0 262 70 518 198 16 16 chrX 3879249 3879370 -173094770 - MLT1E LTR MaLR -2 591 471 534 240 19 28 chrX 3879996 3880159 -173093981 + MLT1E LTR MaLR 12 168 -374 1902 154 7 0 chrX 3880527 3880820 -173093320 + AluJb SINE Alu 1 295 -17 640 149 9 0 chrX 3880899 3881013 -173093127 - L1MB8 LINE L1 -1 6177 6063 381 294 98 33 chrX 3881194 3881378 -173092762 - MIR SINE MIR -18 244 49 1968 133 10 10 chrX 3881401 3881702 -173092438 - AluSx SINE Alu -2 310 10 761 277 81 14 chrX 3881799 3882095 -173092045 - MLT1F1 LTR MaLR 0 567 252 1719 187 18 22 chrX 3882349 3882736 -173091404 - L1MA4 LINE L1 -23 6133 5767 2183 133 28 17 chrX 3882773 3883133 -173091007 - THE1B LTR MaLR 0 364 1 1993 99 60 7 chrX 3883879 3884162 -173089978 + AluSq SINE Alu 1 298 -15 1217 318 92 46 chrX 3884457 3885224 -173088916 + L2 LINE L2 2358 3168 -145 2576 98 19 3 chrX 3885224 3885593 -173088547 + THE1C LTR MaLR 1 375 0 1217 318 92 46 chrX 3885593 3885741 -173088399 + L2 LINE L2 3168 3308 -5 2730 148 140 27 chrX 3885746 3886374 -173087766 + LTR34 LTR ERV1 1 699 0 242 211 19 0 chrX 3886471 3886523 -173087617 - AluJ/FLAM SINE Alu -233 69 17 759 247 6 0 chrX 3887147 3887329 -173086811 + MER58A DNA MER1_type 41 223 -1 24 67 0 0 chrX 3887465 3887510 -173086630 + AT_rich Low_complexity Low_complexity 1 45 0 2300 106 8 65 chrX 3890266 3890652 -173083488 - THE1B LTR MaLR 0 364 1 879 188 28 17 chrX 3890780 3890961 -173083179 + L1PA16 LINE L1 5679 5861 -305 1655 183 28 13 chrX 3890961 3891345 -173082795 + L1PA16 LINE L1 5763 6157 -9 188 108 0 27 chrX 3892085 3892122 -173082018 + (TTTTC)n Simple_repeat Simple_repeat 4 39 0 366 121 0 0 chrX 3892144 3892210 -173081930 + (GGAA)n Simple_repeat Simple_repeat 2 67 0 2014 150 0 0 chrX 3892254 3892548 -173081592 - AluJb SINE Alu -18 294 1 361 335 64 62 chrX 3892840 3893216 -173080924 + L2 LINE L2 2716 3100 -213 2332 107 0 0 chrX 3893216 3893525 -173080615 - AluSc SINE Alu 0 309 1 361 335 64 62 chrX 3893525 3893731 -173080409 + L2 LINE L2 3100 3304 -9 3820 133 20 3 chrX 3893916 3894555 -173079585 - MER39B LTR ERV1 0 653 4 837 213 15 15 chrX 3895572 3895769 -173078371 - MER58A DNA MER1_type -1 223 27 360 0 0 0 chrX 3895880 3895920 -173078220 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 2269 119 0 3 chrX 3896066 3896378 -173077762 - AluSx SINE Alu -1 311 1 1929 177 3 0 chrX 3896594 3896905 -173077235 + AluJo SINE Alu 1 312 0 569 190 25 8 chrX 3896984 3897146 -173076994 - AluSg/x SINE Alu 0 322 159 23 0 0 0 chrX 3899626 3899649 -173074491 + AT_rich Low_complexity Low_complexity 1 23 0 531 140 47 5 chrX 3899686 3899795 -173074345 - L1MA9 LINE L1 -11 6280 6169 499 175 19 62 chrX 3899958 3900118 -173074022 + L1P LINE L1 3840 3992 -2154 607 288 58 10 chrX 3900299 3900504 -173073636 - MER58A DNA MER1_type -9 215 1 328 267 65 65 chrX 3900517 3900764 -173073376 + L1M4 LINE L1 2789 3035 -3111 1320 223 3 3 chrX 3900811 3901098 -173073042 + AluY SINE Alu 1 287 -24 1515 220 73 45 chrX 4001374 4001837 -172972303 - MER39 LTR ERV1 0 707 232 1339 182 171 62 chrX 4002409 4002864 -172971276 - MLT1D LTR MaLR 0 505 1 240 303 41 78 chrX 4003019 4003263 -172970877 + L2 LINE L2 2268 2502 -812 1641 180 14 17 chrX 4003288 4003577 -172970563 + AluJo SINE Alu 1 288 -24 25 0 0 0 chrX 4003580 4003605 -172970535 + AT_rich Low_complexity Low_complexity 1 25 0 274 404 18 18 chrX 4003835 4004060 -172970080 + L2 LINE L2 2560 2784 -530 871 144 0 0 chrX 4004099 4004217 -172969923 + FLAM_C SINE Alu 1 118 -25 2034 133 10 0 chrX 4004400 4004700 -172969440 + AluSx SINE Alu 1 303 -9 2135 161 31 3 chrX 4004929 4005284 -172968856 + MER47A DNA MER2_type 1 365 -1 1700 171 22 0 chrX 4005551 4005826 -172968314 - AluJb SINE Alu -31 281 1 238 205 24 0 chrX 4005947 4006030 -172968110 + (TAGA)n Simple_repeat Simple_repeat 2 86 0 519 128 35 37 chrX 4006129 4006399 -172967741 + (TAGA)n Simple_repeat Simple_repeat 1 269 0 246 194 83 0 chrX 4006559 4006631 -172967509 + L1MC4 LINE L1 6618 6695 -1347 180 0 0 0 chrX 4006631 4006651 -172967489 + (TG)n Simple_repeat Simple_repeat 2 21 0 264 230 45 126 chrX 4006724 4006946 -172967194 - L1ME4a LINE L1 -157 5964 5761 1626 201 3 7 chrX 4008274 4008568 -172965572 - AluJo SINE Alu -19 293 1 846 178 0 0 chrX 4008568 4008703 -172965437 - AluJo SINE Alu -177 135 1 668 256 22 44 chrX 4009162 4009422 -172964718 + MLT1E LTR MaLR 13 233 -391 1903 122 32 10 chrX 4009431 4009801 -172964339 - L1PB4 LINE L1 -598 5558 5184 3984 125 7 12 chrX 4009801 4010393 -172963747 + L1PB4 LINE L1 5565 6154 -2 814 269 31 59 chrX 4010425 4010711 -172963429 + MLT1E LTR MaLR 206 483 -110 2068 130 93 17 chrX 4010716 4011069 -172963071 - MLT1B LTR MaLR -7 383 4 647 177 9 18 chrX 4011073 4011186 -172962954 + MLT1E LTR MaLR 479 590 -3 1374 157 8 0 chrX 4011501 4011743 -172962397 + L1M2 LINE L1 5550 5793 -519 322 279 47 0 chrX 4011778 4011864 -172962276 + L1MC4 LINE L1 6614 6703 -1339 1145 141 0 18 chrX 4011973 4012143 -172961997 - AluJo SINE Alu -145 167 1 190 369 117 0 chrX 4012698 4012809 -172961331 - MIR SINE MIR -69 139 16 1963 126 0 20 chrX 4013991 4014192 -172959948 - AluSq SINE Alu 0 313 295 363 23 0 0 chrX 4014192 4014236 -172959904 + (TTATG)n Simple_repeat Simple_repeat 2 45 0 1963 126 0 20 chrX 4014236 4014526 -172959614 - AluSq SINE Alu -18 295 1 290 331 153 0 chrX 4014614 4014738 -172959402 + MIR SINE MIR 11 153 -109 209 229 0 0 chrX 4014755 4014803 -172959337 - MIR SINE MIR -109 153 106 274 327 9 19 chrX 4014872 4014979 -172959161 + MIR SINE MIR 100 205 -57 1760 75 9 0 chrX 4017269 4017497 -172956643 - AluSp SINE Alu -8 305 76 1762 176 7 3 chrX 4018043 4018333 -172955807 + AluJo SINE Alu 1 291 -21 276 198 85 38 chrX 4018374 4018480 -172955660 - L1ME LINE L1 -298 5823 5713 2233 146 22 3 chrX 4018706 4019063 -172955077 + THE1B LTR MaLR 1 364 0 2144 235 5 43 chrX 4019282 4019840 -172954300 - MLT1F LTR MaLR 0 542 6 21 36 0 0 chrX 4020059 4020087 -172954053 + AT_rich Low_complexity Low_complexity 1 28 0 252 149 0 0 chrX 4020390 4020437 -172953703 + (TC)n Simple_repeat Simple_repeat 2 48 0 1508 243 40 50 chrX 4021342 4021861 -172952279 + LTR40a LTR ERVL 6 519 0 579 164 10 0 chrX 4021898 4022002 -172952138 + Tigger3(Golem) DNA MER2_type 1 105 -2924 * 3279 143 98 22 chrX 4021995 4022269 -172951871 + Tigger3(Golem) DNA MER2_type 2283 2535 -494 2057 120 40 7 chrX 4022269 4022570 -172951570 + AluSx SINE Alu 1 311 -1 3279 143 98 22 chrX 4022570 4022989 -172951151 + Tigger3(Golem) DNA MER2_type 2535 3029 0 611 163 42 226 chrX 4023624 4023874 -172950266 + MLT1A1 LTR MaLR 1 159 -215 518 100 0 25 chrX 4023874 4023954 -172950186 + MADE1 DNA Mariner 3 80 0 611 163 42 226 chrX 4023954 4024084 -172950056 + MLT1A1 LTR MaLR 159 311 -63 555 308 28 34 chrX 4025039 4025155 -172948985 - L1ME3A LINE L1 -33 6137 6022 2377 141 3 3 chrX 4025155 4025530 -172948610 - THE1C LTR MaLR 0 375 1 555 308 28 34 chrX 4025530 4025767 -172948373 - L1ME3A LINE L1 -148 6022 5786 1084 275 65 14 chrX 4026418 4026851 -172947289 - L1ME3A LINE L1 -8 6162 5708 244 175 70 0 chrX 4026853 4026910 -172947230 - MSTA LTR MaLR 0 428 368 23 0 0 0 chrX 4026934 4026957 -172947183 + AT_rich Low_complexity Low_complexity 1 23 0 2271 130 10 55 chrX 4026961 4027361 -172946779 - MSTA LTR MaLR -46 382 1 688 267 6 68 chrX 4027362 4027714 -172946426 - L1ME3A LINE L1 -461 5709 5380 367 98 0 0 chrX 4027715 4027766 -172946374 - MSTB LTR MaLR 0 426 376 1339 167 18 13 chrX 4027768 4027995 -172946145 - AluJo SINE Alu -84 228 1 334 301 27 48 chrX 4030520 4030666 -172943474 - MIR SINE MIR 0 262 120 2212 130 16 19 chrX 4030795 4031171 -172942969 + THE1C LTR MaLR 1 375 0 245 143 0 0 chrX 4031269 4031304 -172942836 - MER5A DNA MER1_type 0 189 155 1172 244 24 3 chrX 4031313 4031604 -172942536 - MER58B DNA MER1_type -2 339 43 2805 128 15 2 chrX 4031610 4032071 -172942069 - MER41B LTR ERV1 0 635 169 348 228 26 26 chrX 4032241 4032355 -172941785 + Charlie8 DNA MER1_type 77 190 -2227 1859 132 140 13 chrX 4032422 4032800 -172941340 - MSTA LTR MaLR 0 428 3 591 225 42 37 chrX 4032957 4033148 -172940992 + Tigger2 DNA MER2_type 1 192 -2526 696 187 22 14 chrX 4033376 4033515 -172940625 + Tigger2 DNA MER2_type 2579 2718 0 721 170 24 48 chrX 4033561 4033726 -172940414 - MLT1A1 LTR MaLR 0 365 217 4445 139 111 98 chrX 4033726 4035250 -172938890 - pTR5 LTR ERV1 -8 2430 714 444 209 122 0 chrX 4035261 4035376 -172938764 - MLT1A1 LTR MaLR -218 147 19 301 329 44 29 chrX 4035387 4035524 -172938616 - MIR SINE MIR -104 158 20 226 210 43 29 chrX 4036149 4036287 -172937853 + (TATAA)n Simple_repeat Simple_repeat 5 144 0 284 206 0 29 chrX 4036371 4036507 -172937633 + (TA)n Simple_repeat Simple_repeat 1 132 0 1780 168 46 0 chrX 4036510 4036838 -172937302 - MER7A DNA MER2_type -5 341 1 2359 121 84 74 chrX 4036917 4037508 -172936632 - MER4B LTR ERV1 0 779 26 256 337 22 0 chrX 4037590 4037682 -172936458 - MIR SINE MIR -104 158 65 348 178 28 0 chrX 4037742 4037849 -172936291 + (TA)n Simple_repeat Simple_repeat 2 111 0 231 146 0 0 chrX 4038413 4038454 -172935686 + (T)n Simple_repeat Simple_repeat 1 41 0 1520 180 6 40 chrX 4039774 4040101 -172934039 + LTR8 LTR ERV1 1 316 -375 1163 104 0 0 chrX 4040134 4040297 -172933843 + LTR8 LTR ERV1 526 688 -3 1206 223 177 9 chrX 4040702 4041268 -172932872 + L1ME2 LINE L1 5198 5851 -313 780 234 9 22 chrX 4041294 4041520 -172932620 + L1ME2 LINE L1 5923 6145 -19 771 124 99 0 chrX 4041808 4041949 -172932191 + FLAM_C SINE Alu 1 153 0 2472 46 23 0 chrX 4042943 4043247 -172930893 - AluY SINE Alu 0 311 1 527 83 83 12 chrX 4043308 4043476 -172930664 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 493 73 85 24 chrX 4043489 4043654 -172930486 + (TAGA)n Simple_repeat Simple_repeat 1 175 0 438 259 83 105 chrX 4043654 4044206 -172929934 + MER34 LTR ERV1 1 540 -2 587 215 0 6 chrX 4044217 4044380 -172929760 + (TAGA)n Simple_repeat Simple_repeat 1 162 0 2021 127 34 3 chrX 4044875 4045167 -172928973 + AluJo SINE Alu 6 306 -6 218 319 21 106 chrX 4045171 4045312 -172928828 + MIR3 SINE MIR 3 131 -77 2224 117 3 0 chrX 4045806 4046104 -172928036 + AluSx SINE Alu 1 299 -13 24 0 0 0 chrX 4047402 4047426 -172926714 + AT_rich Low_complexity Low_complexity 1 24 0 1289 202 8 4 chrX 4047440 4047678 -172926462 - AluJb SINE Alu -73 239 1 359 167 97 0 chrX 4047785 4047857 -172926283 - MER5B DNA MER1_type 0 178 100 273 143 0 18 chrX 4048268 4048324 -172925816 - MLT2B3 LTR ERVL 0 554 500 201 39 0 0 chrX 4048325 4048351 -172925789 + (GA)n Simple_repeat Simple_repeat 1 26 0 336 77 0 0 chrX 4048365 4048417 -172925723 + (CATA)n Simple_repeat Simple_repeat 2 53 0 2391 83 0 0 chrX 4048419 4048720 -172925420 + AluY SINE Alu 4 304 -7 364 128 11 69 chrX 4048774 4048962 -172925178 + (TAGA)n Simple_repeat Simple_repeat 3 179 0 569 89 13 68 chrX 4049007 4049389 -172924751 + (TAGA)n Simple_repeat Simple_repeat 1 360 0 2265 228 23 2 chrX 4049389 4049918 -172924222 - MLT2B3 LTR ERVL -19 506 1 1681 163 8 73 chrX 4050172 4050571 -172923569 + L1MB3 LINE L1 5767 6139 -44 846 180 0 0 chrX 4050578 4050717 -172923423 + FRAM SINE Alu 13 151 -25 308 21 0 21 chrX 4050726 4050773 -172923367 + L1MB3 LINE L1 6129 6174 -9 427 226 32 106 chrX 4051027 4051410 -172922730 + MER34 LTR ERV1 216 542 0 3492 109 25 15 chrX 4051518 4052040 -172922100 - MER1A DNA MER1_type 0 527 1 354 370 68 48 chrX 4053345 4053726 -172920414 + L2 LINE L2 2681 3063 -209 2138 133 3 0 chrX 4054081 4054389 -172919751 + AluSx SINE Alu 1 309 -3 3537 143 11 24 chrX 4055289 4055951 -172918189 - MER39B LTR ERV1 0 653 1 32 26 0 0 chrX 4056360 4056399 -172917741 + AT_rich Low_complexity Low_complexity 1 39 0 1049 156 0 0 chrX 4056411 4056565 -172917575 - AluSg/x SINE Alu -32 278 125 2324 192 36 2 chrX 4056682 4057039 -172917101 + L1MA9 LINE L1 5797 6177 -135 234 0 0 0 chrX 4057039 4057065 -172917075 + (TAA)n Simple_repeat Simple_repeat 2 27 0 2324 192 36 2 chrX 4057065 4057201 -172916939 + L1MA9 LINE L1 6177 6307 -5 278 304 35 26 chrX 4058046 4058276 -172915864 + L1ME LINE L1 4488 4719 -1427 449 326 113 53 chrX 4058287 4058539 -172915601 + L1ME LINE L1 4759 4995 -1169 2062 119 10 19 chrX 4058539 4058849 -172915291 + AluSx SINE Alu 2 308 -4 449 326 113 53 chrX 4058849 4059422 -172914718 + L1ME LINE L1 4995 5634 -530 1255 140 8 86 chrX 4059591 4059834 -172914306 + AluJo SINE Alu 86 309 -3 401 161 0 86 chrX 4059960 4060041 -172914099 + FLAM_A SINE Alu 37 110 -32 396 0 0 0 chrX 4060047 4060091 -172914049 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 189 0 0 0 chrX 4060876 4060897 -172913243 + (A)n Simple_repeat Simple_repeat 1 21 0 1728 153 0 0 chrX 4061630 4061989 -172912151 - L1PB4 LINE L1 -19 6137 5707 * 3545 206 37 50 chrX 4061979 4062957 -172911183 + L1MA5 LINE L1 5336 6300 0 21 36 0 0 chrX 4063199 4063227 -172910913 + AT_rich Low_complexity Low_complexity 1 28 0 26 30 0 0 chrX 4063754 4063787 -172910353 + AT_rich Low_complexity Low_complexity 1 33 0 1754 128 36 32 chrX 4064343 4064624 -172909516 - THE1B LTR MaLR 0 364 83 697 122 0 0 chrX 4064625 4064723 -172909417 + AluJb SINE Alu 11 108 -204 276 100 0 0 chrX 4064726 4064766 -172909374 + (CA)n Simple_repeat Simple_repeat 2 41 0 430 253 0 0 chrX 4064902 4064989 -172909151 - MIR SINE MIR -103 159 73 2170 217 35 2 chrX 4064998 4065482 -172908658 - L1MC3 LINE L1 -10 7775 7276 496 156 31 10 chrX 4065482 4065578 -172908562 + MER4A LTR ERV1 1 98 -566 1970 122 3 22 chrX 4065578 4065930 -172908210 + MER4A LTR ERV1 261 664 0 879 72 171 40 chrX 4065935 4065958 -172908182 + MER4A-int LTR ERV1 3 22 -6576 3647 92 17 31 chrX 4065958 4066478 -172907662 + LTR10D LTR ERV1 1 513 0 879 72 171 40 chrX 4066478 4066606 -172907534 + MER4A-int LTR ERV1 22 174 -6424 394 227 11 0 chrX 4066606 4066694 -172907446 - L1MC3 LINE L1 -503 7282 7194 232 233 0 33 chrX 4066698 4066758 -172907382 - MLT1F1 LTR MaLR -443 124 67 249 298 12 12 chrX 4067006 4067090 -172907050 - L2 LINE L2 -211 3061 2978 1688 179 0 11 chrX 4067432 4067747 -172906393 - AluJo SINE Alu 0 312 1 276 216 72 54 chrX 4067988 4068099 -172906041 + L1MC/D LINE L1 5648 5760 -2048 507 178 0 0 chrX 4068099 4068200 -172905940 + GA-rich Low_complexity Low_complexity 2 102 0 575 171 6 12 chrX 4068916 4069076 -172905064 + GA-rich Low_complexity Low_complexity 1 159 0 356 279 154 48 chrX 4069699 4070029 -172904111 - L2 LINE L2 -388 2926 2562 2354 114 0 0 chrX 4070145 4070452 -172903688 - AluSx SINE Alu -5 307 1 1656 157 27 13 chrX 4070559 4070859 -172903281 + L1MA7 LINE L1 5985 6288 -3 1508 147 47 36 chrX 4070865 4071144 -172902996 + AluJo SINE Alu 1 282 -30 24 32 0 0 chrX 4071144 4071175 -172902965 + AT_rich Low_complexity Low_complexity 1 31 0 1266 199 22 36 chrX 4072166 4072442 -172901698 + AluJo SINE Alu 41 312 0 893 208 99 121 chrX 4072675 4072868 -172901272 + MLT1D LTR MaLR 3 199 -306 3297 148 10 2 chrX 4072868 4073383 -172900757 + L1PA15 LINE L1 5634 6152 -13 893 208 99 121 chrX 4073383 4073703 -172900437 + MLT1D LTR MaLR 199 505 0 689 239 71 49 chrX 4073705 4074063 -172900077 - L2 LINE L2 -172 3141 2770 321 200 29 0 chrX 4074078 4074148 -172899992 - MER20 DNA MER1_type -71 148 77 386 313 79 75 chrX 4074163 4074441 -172899699 - L2 LINE L2 -586 2728 2450 588 255 6 25 chrX 4074758 4074915 -172899225 + MER5B DNA MER1_type 2 155 -23 724 230 141 5 chrX 4074959 4075150 -172898990 + MER20 DNA MER1_type 2 218 -1 972 184 22 83 chrX 4075796 4076024 -172898116 + MER20 DNA MER1_type 5 218 -1 443 250 87 0 chrX 4076438 4076542 -172897598 - MER81 DNA DNA 0 114 2 2269 103 0 3 chrX 4077251 4077551 -172896589 + AluSx SINE Alu 1 299 -13 237 180 0 0 chrX 4077812 4077862 -172896278 + (CATA)n Simple_repeat Simple_repeat 3 52 0 234 152 0 0 chrX 4077969 4078002 -172896138 - Alu SINE Alu -16 117 85 348 83 0 0 chrX 4078825 4078873 -172895267 + (GA)n Simple_repeat Simple_repeat 1 48 0 258 32 0 0 chrX 4079265 4079296 -172894844 + (TAA)n Simple_repeat Simple_repeat 3 33 0 1945 169 16 27 chrX 4080160 4080422 -172893718 - MLT1A1 LTR MaLR -2 363 105 3750 84 2 0 chrX 4080422 4080874 -172893266 - MLT2A2 LTR ERVL 0 453 1 1945 169 16 27 chrX 4080874 4080978 -172893162 - MLT1A1 LTR MaLR -260 105 1 1645 153 16 39 chrX 4081464 4081772 -172892368 - AluJb SINE Alu -11 301 1 1426 182 87 0 chrX 4082756 4083042 -172891098 + AluJo SINE Alu 1 311 -1 468 270 16 24 chrX 4084272 4084398 -172889742 + MER94 DNA DNA 10 134 0 2623 102 25 25 chrX 4084520 4084884 -172889256 - THE1B LTR MaLR 0 364 1 625 269 8 95 chrX 4085037 4085062 -172889078 + LTR52 LTR ERVL 1 27 -394 1712 182 0 10 chrX 4085062 4085359 -172888781 - AluJo SINE Alu -18 294 1 625 269 8 95 chrX 4085359 4085575 -172888565 + LTR52 LTR ERVL 27 221 -200 1596 254 91 9 chrX 4086126 4086575 -172887565 - MLT1E LTR MaLR -12 581 96 634 223 153 0 chrX 4086756 4086958 -172887182 - MER106A DNA MER1_type 0 236 4 598 329 40 0 chrX 4086961 4087183 -172886957 + MIR SINE MIR 20 250 -12 193 209 30 0 chrX 4087605 4087672 -172886468 + (TCCA)n Simple_repeat Simple_repeat 1 69 0 338 294 0 9 chrX 4087690 4087799 -172886341 + (TTCA)n Simple_repeat Simple_repeat 2 109 0 560 162 0 58 chrX 4087799 4087990 -172886150 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 477 249 7 12 chrX 4088058 4088506 -172885634 + (TCCA)n Simple_repeat Simple_repeat 1 445 0 242 217 0 0 chrX 4089665 4089711 -172884429 - L3b LINE CR1 -196 1387 1342 2807 97 19 13 chrX 4089849 4090222 -172883918 + THE1C LTR MaLR 1 375 0 306 164 0 66 chrX 4090547 4090608 -172883532 - MER116 DNA Mariner -1 79 23 1188 178 5 0 chrX 4090987 4091214 -172882926 + AluJo SINE Alu 87 314 0 732 207 67 0 chrX 4091214 4091378 -172882762 - MLT1D LTR MaLR -330 175 1 1565 176 40 29 chrX 4091552 4091830 -172882310 - AluJo SINE Alu -31 281 1 1592 210 36 15 chrX 4091832 4092161 -172881979 + MLT1D LTR MaLR 169 504 -1 874 122 0 46 chrX 4092239 4092370 -172881770 + FLAM_C SINE Alu 1 125 -8 27 0 0 0 chrX 4092370 4092397 -172881743 + AT_rich Low_complexity Low_complexity 1 27 0 8087 98 6 15 chrX 4092426 4093503 -172880637 + MER11C LTR ERVK 1 1067 -4 288 242 15 15 chrX 4093833 4093899 -172880241 + MER81 DNA DNA 2 67 -47 204 291 23 47 chrX 4094034 4094120 -172880020 - L2 LINE L2 0 3272 3189 257 222 0 0 chrX 4094209 4094263 -172879877 + L1MC4 LINE L1 6650 6703 -1339 220 186 51 23 chrX 4094414 4094637 -172879503 + (TA)n Simple_repeat Simple_repeat 1 229 0 * 307 220 38 23 chrX 4094619 4094751 -172879389 + (TTATA)n Simple_repeat Simple_repeat 5 138 0 183 286 18 0 chrX 4095634 4095690 -172878450 + MIR SINE MIR 77 133 -129 222 286 98 38 chrX 4096049 4096182 -172877958 + MIR SINE MIR 29 169 -93 319 221 0 15 chrX 4096333 4096401 -172877739 + MER5A DNA MER1_type 14 80 -109 861 143 0 15 chrX 4096408 4096541 -172877599 + FRAM SINE Alu 24 154 -22 569 139 7 131 chrX 4096541 4096678 -172877462 + MER5A DNA MER1_type 60 179 -10 22 0 0 0 chrX 4096984 4097006 -172877134 + AT_rich Low_complexity Low_complexity 1 22 0 1815 171 0 7 chrX 4097006 4097315 -172876825 - AluJb SINE Alu -5 307 1 880 248 103 31 chrX 4098378 4098914 -172875226 + MLT1E1 LTR MaLR 1 654 0 2823 102 3 3 chrX 4099093 4099457 -172874683 + THE1B LTR MaLR 1 364 0 2586 130 75 0 chrX 4099799 4100200 -172873940 - MSTB1 LTR MaLR -1 431 1 1659 211 18 46 chrX 4100589 4101025 -172873115 - LTR37A LTR ERV1 -2 424 1 1772 164 0 35 chrX 4101156 4101467 -172872673 + AluJo SINE Alu 1 300 -12 2333 208 32 75 chrX 4101520 4102185 -172871955 - MER92B LTR ERV1 0 636 1 2935 122 9 14 chrX 4102662 4103098 -172871042 + MER57B LTR ERV1 1 434 0 1128 201 20 108 chrX 4103352 4103720 -172870420 - MLT1A1 LTR MaLR -1 625 280 2222 106 0 7 chrX 4103720 4104021 -172870119 - AluSx SINE Alu -13 299 1 1128 201 20 108 chrX 4104021 4104258 -172869882 - MLT1A1 LTR MaLR -346 280 24 666 232 38 38 chrX 4104266 4104451 -172869689 - MLT1E2 LTR MaLR -194 432 248 226 287 74 74 chrX 4104450 4104680 -172869460 + MARNA DNA Mariner 341 570 -16 * 756 212 55 84 chrX 4104783 4105127 -172869013 + LTR37A LTR ERV1 27 360 -66 1061 260 157 54 chrX 4105672 4106206 -172867934 + MER69 DNA AcHobo 213 801 -1725 385 264 31 16 chrX 4106207 4106336 -172867804 + MER69 DNA AcHobo 2017 2147 -379 342 215 0 0 chrX 4106479 4106544 -172867596 + MER92C LTR ERV1 1 65 -489 3248 104 18 2 chrX 4106561 4107004 -172867136 - L1PA16 LINE L1 0 6166 5717 308 235 15 0 chrX 4107266 4107334 -172866806 + MER92C LTR ERV1 484 552 -2 1123 137 5 58 chrX 4108229 4108419 -172865721 + AluJb SINE Alu 107 286 -26 245 250 122 71 chrX 4108423 4108619 -172865521 + LTR48 LTR ERV1 575 780 -7 1253 201 79 0 chrX 4108740 4108994 -172865146 + AluJb SINE Alu 1 274 -38 333 0 0 0 chrX 4109016 4109053 -172865087 + (GAAAA)n Simple_repeat Simple_repeat 2 38 0 387 186 0 0 chrX 4109177 4109247 -172864893 - L1MB8 LINE L1 -1 6177 6108 1035 170 18 50 chrX 4109260 4109478 -172864662 - L1MB2 LINE L1 -2 6169 5959 216 0 0 0 chrX 4109479 4109503 -172864637 + (TCCCC)n Simple_repeat Simple_repeat 4 27 0 1229 24 30 6 chrX 4109513 4109681 -172864459 + (TTTC)n Simple_repeat Simple_repeat 1 172 0 2154 108 0 0 chrX 4109686 4109963 -172864177 - AluSx SINE Alu -35 277 1 1331 185 39 8 chrX 4110361 4110620 -172863520 + L1MB2 LINE L1 5587 5853 -318 368 177 8 32 chrX 4110796 4110872 -172863268 + MER21B LTR ERV1 34 136 -469 448 268 51 22 chrX 4110911 4111049 -172863091 + MER21B LTR ERV1 98 239 -624 836 178 16 0 chrX 4111152 4111281 -172862859 - FLAM_C SINE Alu -11 132 2 853 266 83 66 chrX 4111444 4111672 -172862468 - L1ME2 LINE L1 -19 6145 5922 683 216 61 17 chrX 4111672 4111853 -172862287 - MER53 DNA DNA 0 189 1 853 266 83 66 chrX 4111853 4112106 -172862034 - L1ME2 LINE L1 -242 5922 5656 264 188 34 17 chrX 4112110 4112286 -172861854 + (TCTA)n Simple_repeat Simple_repeat 2 180 0 363 117 49 31 chrX 4112297 4112459 -172861681 + (TCTA)n Simple_repeat Simple_repeat 2 166 0 441 113 21 21 chrX 4112509 4112606 -172861534 + (TCTA)n Simple_repeat Simple_repeat 1 97 0 271 320 160 16 chrX 4112640 4113027 -172861113 + L2 LINE L2 2451 2893 -421 2234 92 0 0 chrX 4113028 4113348 -172860792 - AluSx SINE Alu 0 320 1 1916 153 0 7 chrX 4113634 4113935 -172860205 - AluJb SINE Alu -13 299 1 2005 174 26 3 chrX 4113936 4114280 -172859860 - MER47A DNA MER2_type -6 360 9 210 261 15 0 chrX 4115320 4115385 -172858755 + GA-rich Low_complexity Low_complexity 1 66 0 223 191 0 0 chrX 4115890 4115932 -172858208 + T-rich Low_complexity Low_complexity 1 42 0 219 351 54 0 chrX 4116087 4116198 -172857942 + L2 LINE L2 3197 3313 0 1664 232 27 2 chrX 4118199 4118657 -172855483 + MLT2B1 LTR ERVL 3 515 0 3451 133 27 2 chrX 4118848 4119374 -172854766 - MER41C LTR ERV1 -2 552 14 2182 107 0 0 chrX 4119757 4120068 -172854072 - AluSx SINE Alu 0 312 2 458 184 149 0 chrX 4120466 4120553 -172853587 - MER20 DNA MER1_type 0 219 120 201 74 0 0 chrX 4121197 4121224 -172852916 + (TG)n Simple_repeat Simple_repeat 2 28 0 1981 118 76 0 chrX 4121293 4121582 -172852558 - AluSx SINE Alu -1 311 1 232 175 19 155 chrX 4122101 4122204 -172851936 + L1MC4 LINE L1 6615 6703 -1339 202 162 27 0 chrX 4122205 4122242 -172851898 + (TA)n Simple_repeat Simple_repeat 1 38 0 1854 144 10 10 chrX 4122406 4122705 -172851435 - AluJo SINE Alu -9 303 5 463 303 37 31 chrX 4125382 4125705 -172848435 + L1ME4a LINE L1 5600 5924 -197 601 184 18 110 chrX 4125705 4125804 -172848336 - MER5A DNA MER1_type -28 161 81 1850 158 10 7 chrX 4125804 4126107 -172848033 - AluSx SINE Alu -8 304 1 601 184 18 110 chrX 4126107 4126170 -172847970 - MER5A DNA MER1_type -108 81 14 2702 185 53 42 chrX 4126303 4126381 -172847759 + L1MB5 LINE L1 5541 5617 -557 1762 165 28 92 chrX 4126381 4126781 -172847359 - MLT1A2 LTR MaLR 0 374 1 2702 185 53 42 chrX 4126781 4126829 -172847311 + L1MB5 LINE L1 5617 5663 -511 324 70 0 0 chrX 4126829 4126872 -172847268 + (TG)n Simple_repeat Simple_repeat 2 44 0 236 54 54 0 chrX 4126871 4126908 -172847232 + (TCTA)n Simple_repeat Simple_repeat 4 42 0 * 2702 185 53 42 chrX 4126872 4127406 -172846734 + L1MB5 LINE L1 5663 6173 -1 249 308 77 29 chrX 4127406 4127510 -172846630 + MER5B DNA MER1_type 61 169 -9 312 265 0 12 chrX 4127659 4127742 -172846398 + MER5A DNA MER1_type 13 94 -95 2132 200 48 30 chrX 4127991 4128199 -172845941 - MER66B LTR ERV1 0 486 283 2024 134 7 0 chrX 4128199 4128497 -172845643 - AluSx SINE Alu -11 301 2 2132 200 48 30 chrX 4128497 4128762 -172845378 - MER66B LTR ERV1 -203 283 4 986 221 160 19 chrX 4129443 4129706 -172844434 - AluSg SINE Alu 0 300 1 1013 220 77 10 chrX 4130408 4130617 -172843523 + MER58A DNA MER1_type 2 224 0 193 29 29 29 chrX 4131843 4131878 -172842262 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 729 212 0 14 chrX 4131970 4132116 -172842024 - MER58B DNA MER1_type -1 340 197 328 266 261 5 chrX 4133788 4133995 -172840145 - MIR SINE MIR 0 262 3 1093 202 5 14 chrX 4134007 4134225 -172839915 - MER20 DNA MER1_type -3 216 1 271 246 16 0 chrX 4134225 4134286 -172839854 + MER116 DNA Mariner 4 65 -15 421 114 51 0 chrX 4135429 4135508 -172838632 - L1MD2 LINE L1 0 6359 6277 1075 227 18 0 chrX 4135518 4135738 -172838402 + L1MD1 LINE L1 5918 6141 -101 * 3456 197 67 9 chrX 4135735 4136578 -172837562 - L1M4 LINE L1 -4127 2517 1533 313 262 60 99 chrX 4136954 4137026 -172837114 - L1 LINE L1 -1672 4474 4401 1796 145 0 48 chrX 4137026 4137365 -172836775 - AluJb SINE Alu 0 312 6 313 262 60 99 chrX 4137365 4137544 -172836596 - L1 LINE L1 -1745 4401 4233 326 286 38 0 chrX 4137649 4137782 -172836358 - MER103 DNA DNA -4 162 25 1088 173 72 61 chrX 4138759 4138961 -172835179 - MER58B DNA MER1_type -2080 340 133 1956 131 14 0 chrX 4138961 4139243 -172834897 - AluSx SINE Alu -21 291 6 1088 173 72 61 chrX 4139243 4139318 -172834822 - MER58B DNA MER1_type -2287 133 60 305 284 37 9 chrX 4139365 4139474 -172834666 + L1ME4a LINE L1 5808 5919 -202 1670 164 3 16 chrX 4140146 4140450 -172833690 - AluJb SINE Alu -12 300 1 404 347 46 6 chrX 4141187 4141305 -172832835 - MIR SINE MIR -34 228 99 261 0 0 0 chrX 4141305 4141334 -172832806 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 404 347 46 6 chrX 4141334 4141388 -172832752 - MIR SINE MIR -163 99 49 1278 199 14 0 chrX 4142707 4142923 -172831217 + MER20 DNA MER1_type 1 219 0 1870 141 17 20 chrX 4143877 4144175 -172829965 - AluJb SINE Alu -15 297 1 880 184 60 0 chrX 4145752 4145920 -172828220 - L1MB7 LINE L1 0 6184 6007 1425 177 8 0 chrX 4145943 4146203 -172827937 - L1MB7 LINE L1 -352 5826 5565 292 253 110 34 chrX 4146284 4146430 -172827710 + L2 LINE L2 1882 2038 -1276 262 286 43 0 chrX 4146906 4146976 -172827164 + L2 LINE L2 3196 3268 -4 227 164 77 10 chrX 4146982 4147009 -172827131 + (TA)n Simple_repeat Simple_repeat 1 25 -86 2715 233 51 19 chrX 4147009 4147641 -172826499 + MER82 DNA MER2_type 1 652 -1 227 164 77 10 chrX 4147641 4147717 -172826423 + (TA)n Simple_repeat Simple_repeat 25 111 0 * 276 185 33 82 chrX 4147643 4147827 -172826313 + (TATAA)n Simple_repeat Simple_repeat 5 179 0 * 281 241 51 6 chrX 4147702 4147860 -172826280 + (TTATA)n Simple_repeat Simple_repeat 5 169 0 2216 118 14 35 chrX 4147897 4148243 -172825897 - THE1B LTR MaLR 0 364 26 6086 124 2 5 chrX 4148243 4149321 -172824819 + L1PB1 LINE L1 5019 6094 -57 259 163 0 0 chrX 4149339 4149382 -172824758 - THE1B LTR MaLR -332 43 1 225 279 13 0 chrX 4149393 4149472 -172824668 + (TA)n Simple_repeat Simple_repeat 1 80 0 397 329 83 45 chrX 4149568 4149966 -172824174 + L2 LINE L2 2365 2777 -537 2347 89 0 10 chrX 4151150 4151497 -172822643 - AluY SINE Alu 0 344 1 237 33 0 0 chrX 4151937 4151967 -172822173 + (CA)n Simple_repeat Simple_repeat 1 30 0 5808 74 4 1 chrX 4155234 4155948 -172818192 + L1PA10 LINE L1 5450 6165 -3 1764 180 0 3 chrX 4156410 4156693 -172817447 + AluJo SINE Alu 1 282 -30 225 0 0 0 chrX 4156700 4156725 -172817415 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 254 302 78 31 chrX 4157674 4157803 -172816337 + MIR SINE MIR 78 212 -50 360 308 52 28 chrX 4157877 4158127 -172816013 - L1ME LINE L1 -297 5824 5569 353 286 43 9 chrX 4159194 4159329 -172814811 - L1MD2 LINE L1 0 6242 6106 1689 141 17 44 chrX 4159536 4159868 -172814272 - AluJo SINE Alu 0 312 1 1106 213 15 0 chrX 4159874 4160076 -172814064 - MER58A DNA MER1_type -15 209 5 1909 127 40 3 chrX 4160208 4160508 -172813632 + AluSx SINE Alu 1 311 -1 276 100 0 0 chrX 4160508 4160548 -172813592 + (GA)n Simple_repeat Simple_repeat 1 40 0 239 132 38 0 chrX 4160683 4160736 -172813404 + (CCTA)n Simple_repeat Simple_repeat 3 57 0 2393 90 0 0 chrX 4361089 4361388 -172612752 - AluSg SINE Alu -11 299 1 884 137 17 105 chrX 4361566 4361830 -172612310 + L1M3 LINE L1 5387 5609 -574 2185 130 0 0 chrX 4361830 4362138 -172612002 + AluSx SINE Alu 1 308 -4 289 276 203 11 chrX 4362148 4362409 -172611731 - L2 LINE L2 -609 2705 2395 812 286 25 0 chrX 4362457 4362660 -172611480 - MER58A DNA MER1_type -16 208 1 380 293 115 13 chrX 4362668 4362825 -172611315 - L2 LINE L2 -1024 2290 2118 438 256 137 21 chrX 4362974 4363134 -172611006 + MIR SINE MIR 2 182 -62 475 246 64 115 chrX 4363734 4363870 -172610270 - L1MC4 LINE L1 -966 7076 6935 660 208 24 8 chrX 4363870 4363995 -172610145 - FLAM_A SINE Alu -6 127 1 475 246 64 115 chrX 4363995 4364171 -172609969 - L1MC4 LINE L1 -1107 6935 6780 329 251 101 84 chrX 4364165 4364344 -172609796 + L1MC5 LINE L1 6999 7180 -781 * 4191 177 29 51 chrX 4364484 4365274 -172608866 - L1MB8 LINE L1 -1 6177 5371 2343 99 0 3 chrX 4365274 4365587 -172608553 - AluSx SINE Alu 0 312 1 4191 177 29 51 chrX 4365587 4365666 -172608474 - L1MB8 LINE L1 -807 5371 5292 3760 136 80 0 chrX 4365666 4366267 -172607873 - L1MC1 LINE L1 0 6333 5685 4191 177 29 51 chrX 4366267 4366392 -172607748 - L1MB8 LINE L1 -886 5292 5166 2418 79 0 10 chrX 4366392 4366696 -172607444 - AluSg SINE Alu -9 301 1 4191 177 29 51 chrX 4366696 4366887 -172607253 - L1MB8 LINE L1 -1012 5166 5007 1443 102 20 0 chrX 4366910 4367202 -172606938 + AluJb SINE Alu 110 405 0 446 167 118 0 chrX 4367202 4367304 -172606836 - L1MB8 LINE L1 -1107 5039 4926 225 271 71 12 chrX 4367349 4367434 -172606706 + L1MC4 LINE L1 7899 7988 -54 1445 180 46 4 chrX 4367706 4368018 -172606122 + MER33 DNA MER1_type 1 313 -11 276 330 52 0 chrX 4368091 4368188 -172605952 + MIR SINE MIR 19 120 -88 204 296 28 14 chrX 4368207 4368278 -172605862 - L2 LINE L2 -4 3309 3238 258 158 0 0 chrX 4368623 4368661 -172605479 + MLT1I LTR MaLR 98 135 -274 421 193 45 23 chrX 4368705 4368793 -172605347 + MLT1G1 LTR MaLR 224 313 -282 1317 158 29 0 chrX 4368818 4369027 -172605113 + MER20 DNA MER1_type 2 216 -3 1503 231 43 5 chrX 4370521 4370893 -172603247 - MER58D DNA MER1_type 0 386 1 297 250 9 37 chrX 4371149 4371257 -172602883 + C-rich Low_complexity Low_complexity 4 108 0 246 256 0 23 chrX 4371265 4371351 -172602789 + (CCG)n Simple_repeat Simple_repeat 2 85 0 23 0 0 0 chrX 4371497 4371520 -172602620 + GC_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chrX 4371628 4371657 -172602483 + GC_rich Low_complexity Low_complexity 1 29 0 202 312 130 7 chrX 4371986 4372140 -172602000 - MER5B DNA MER1_type -5 173 1 862 181 82 16 chrX 4372541 4372723 -172601417 + L1M4 LINE L1 4901 5094 -1052 1465 268 92 15 chrX 4373934 4374412 -172599728 - MLT1G1 LTR MaLR -7 588 74 437 167 26 0 chrX 4374733 4374811 -172599329 - MER58 DNA MER1_type 0 2420 2341 1366 174 156 46 chrX 4374816 4375207 -172598933 - MLT1D LTR MaLR -70 435 2 237 195 0 0 chrX 4375208 4375249 -172598891 - MER58 DNA MER1_type -137 78 38 2353 171 10 10 chrX 4375299 4375690 -172598450 - MSTD LTR MaLR -5 391 1 896 147 0 29 chrX 4375919 4376055 -172598085 - FLAM_A SINE Alu -1 132 1 2375 79 16 3 chrX 4376090 4376393 -172597747 - AluSp SINE Alu -6 307 1 1081 156 9 73 chrX 4376680 4376898 -172597242 - MER46A DNA MER2_type -1 235 32 2120 117 3 10 chrX 4376954 4377253 -172596887 + AluSx SINE Alu 1 297 -15 1506 261 156 31 chrX 4377708 4378491 -172595649 + HAL1 LINE L1 1627 2507 0 2920 158 66 19 chrX 4378506 4379037 -172595103 + MER68 LTR ERV1 3 558 -4 1224 172 21 21 chrX 4379541 4379779 -172594361 + L1MD2 LINE L1 6122 6359 0 1530 206 108 30 chrX 4379964 4380397 -172593743 - MLT1C LTR MaLR 0 467 1 1534 156 31 49 chrX 4380782 4381070 -172593070 - MER58 DNA MER1_type -58 283 1 519 17 0 0 chrX 4381100 4381160 -172592980 + (TG)n Simple_repeat Simple_repeat 2 61 0 281 269 201 52 chrX 4381173 4381422 -172592718 - L3 LINE CR1 -640 937 652 2338 86 0 7 chrX 4381488 4381801 -172592339 - AluSx SINE Alu 0 312 1 1975 108 21 7 chrX 4382218 4382532 -172591608 - AluSq SINE Alu 0 318 1 1543 218 121 20 chrX 4382905 4383181 -172590959 - MLT1D LTR MaLR 0 505 258 1897 137 3 36 chrX 4383181 4383488 -172590652 - AluJo SINE Alu -14 298 2 1543 218 121 20 chrX 4383488 4383666 -172590474 - MLT1D LTR MaLR -247 258 5 465 267 33 0 chrX 4383743 4383863 -172590277 + MER94 DNA DNA 10 133 -1 2298 109 0 0 chrX 4384041 4384334 -172589806 - AluSx SINE Alu -19 293 1 241 260 68 14 chrX 4385005 4385078 -172589062 + L1ME LINE L1 5748 5824 -297 331 314 28 28 chrX 4385113 4385280 -172588860 + MIR SINE MIR 13 180 -28 1774 220 15 3 chrX 4385290 4385627 -172588513 - MER58B DNA MER1_type 0 341 1 2401 78 0 16 chrX 4385683 4385991 -172588149 + AluSx SINE Alu 1 303 -9 455 86 71 14 chrX 4386629 4386699 -172587441 - MSTD LTR MaLR -2 394 321 2322 79 0 7 chrX 4386700 4386991 -172587149 + AluSq SINE Alu 2 290 -23 1623 155 51 83 chrX 4387431 4387826 -172586314 + MLT2D LTR ERVL 4 480 -40 286 181 48 0 chrX 4387832 4387915 -172586225 + (TATG)n Simple_repeat Simple_repeat 1 87 0 326 134 0 5 chrX 4387915 4387929 -172586211 + MLT2B1 LTR ERVL 391 404 -116 186 43 0 0 chrX 4387929 4387952 -172586188 + (CA)n Simple_repeat Simple_repeat 2 24 0 326 134 0 5 chrX 4387952 4387993 -172586147 + MLT2B1 LTR ERVL 404 520 0 349 223 106 0 chrX 4388272 4388366 -172585774 - Charlie7 DNA MER1_type -2507 105 2 24 0 0 0 chrX 4388714 4388738 -172585402 + AT_rich Low_complexity Low_complexity 1 24 0 213 289 0 0 chrX 4389081 4389133 -172585007 + MER91B DNA MER1_type 79 130 -60 435 232 11 42 chrX 4389161 4389256 -172584884 + MER91B DNA MER1_type 98 189 -1 215 237 0 34 chrX 4389376 4389435 -172584705 - L2 LINE L2 0 3313 3257 302 271 161 9 chrX 4389679 4389822 -172584318 - MIR SINE MIR -65 143 28 21 0 0 0 chrX 4390311 4390332 -172583808 + AT_rich Low_complexity Low_complexity 1 21 0 593 265 111 20 chrX 4390381 4390686 -172583454 - L1MC4 LINE L1 0 8042 7604 627 302 86 7 chrX 4390691 4390969 -172583171 - MLT1H LTR MaLR 0 549 250 2590 194 18 22 chrX 4391433 4391943 -172582197 - LTR31 LTR ERV1 -8 611 104 1841 163 17 0 chrX 4391984 4392273 -172581867 - AluJo SINE Alu -18 294 1 208 331 110 55 chrX 4392591 4392718 -172581422 + MIR SINE MIR 59 192 -70 474 301 56 20 chrX 4393025 4393221 -172580919 - MIR SINE MIR 0 262 60 320 317 50 25 chrX 4393686 4393806 -172580334 - L2 LINE L2 -1 3271 3149 290 297 42 8 chrX 4393932 4394050 -172580090 - MIR SINE MIR -121 141 20 2170 102 10 3 chrX 4394363 4394656 -172579484 + AluSq SINE Alu 1 295 -18 3126 167 13 9 chrX 4394662 4395206 -172578934 + MER68 LTR ERV1 17 562 0 192 40 0 0 chrX 4395214 4395239 -172578901 + (TC)n Simple_repeat Simple_repeat 2 26 0 382 216 0 36 chrX 4395376 4395543 -172578597 + CT-rich Low_complexity Low_complexity 4 164 0 18940 49 6 1 chrX 4396157 4399207 -172574933 - L1PA8 LINE L1 -8 6164 3105 2795 29 0 0 chrX 4399817 4400159 -172573981 - AluYa5 SINE Alu 0 342 1 296 282 70 106 chrX 4400170 4400443 -172573697 + L2 LINE L2 3005 3267 -46 1028 157 52 33 chrX 4400527 4400737 -172573403 - MER58 DNA MER1_type -2205 215 2 276 30 0 0 chrX 4401063 4401096 -172573044 + (CA)n Simple_repeat Simple_repeat 2 34 0 212 175 0 25 chrX 4403236 4403276 -172570864 + (TG)n Simple_repeat Simple_repeat 2 40 0 2594 68 0 3 chrX 4404275 4404585 -172569555 + AluY SINE Alu 1 309 -2 935 99 7 0 chrX 4404585 4404726 -172569414 + (TA)n Simple_repeat Simple_repeat 2 143 0 381 297 45 0 chrX 4405781 4405892 -172568248 + L2 LINE L2 3197 3312 -1 1140 138 40 62 chrX 4406726 4406950 -172567190 + MER20 DNA MER1_type 1 219 0 1696 126 67 22 chrX 4407308 4407611 -172566529 + AluSg SINE Alu 1 315 0 2076 153 12 21 chrX 4409572 4409911 -172564229 + MER58B DNA MER1_type 5 340 -1 494 274 153 6 chrX 4410687 4410844 -172563296 + MER5A DNA MER1_type 10 189 0 259 286 63 48 chrX 4410849 4410975 -172563165 + MIR SINE MIR 19 146 -62 1535 159 132 25 chrX 4410985 4411311 -172562829 - MLT1A1 LTR MaLR 0 365 5 387 336 18 21 chrX 4411423 4411666 -172562474 - MIR SINE MIR -2 260 20 863 213 4 101 chrX 4412232 4412509 -172561631 - MIR SINE MIR -6 256 7 249 21 43 43 chrX 4412549 4412596 -172561544 + (CAAAAA)n Simple_repeat Simple_repeat 2 48 0 1054 164 13 69 chrX 4412784 4413016 -172561124 + MER20 DNA MER1_type 1 219 0 389 86 17 0 chrX 4414696 4414754 -172559386 - L1PA6 LINE L1 -3 6151 6093 3268 111 45 17 chrX 4415270 4416208 -172557932 + MER11C LTR ERVK 1 1071 0 361 291 34 8 chrX 4416517 4416634 -172557506 + L2 LINE L2 3192 3311 -2 267 372 34 34 chrX 4416672 4416820 -172557320 - L2 LINE L2 0 3272 3125 2088 132 10 10 chrX 4416945 4417256 -172556884 + AluJb SINE Alu 1 311 -1 1480 112 8 33 chrX 4418162 4418403 -172555737 - MER65C LTR ERV1 0 461 227 2537 147 45 2 chrX 4418406 4418808 -172555332 + MSTB LTR MaLR 8 426 0 1288 163 13 13 chrX 4418808 4419041 -172555099 - MER65C LTR ERV1 -228 233 1 2067 144 0 3 chrX 4419135 4419433 -172554707 - AluSx SINE Alu -15 297 1 782 151 27 62 chrX 4419602 4419748 -172554392 - FLAM_C SINE Alu -1 142 2 2337 102 10 0 chrX 4420310 4420614 -172553526 + AluSx SINE Alu 1 307 -5 25 31 0 0 chrX 4420954 4420986 -172553154 + AT_rich Low_complexity Low_complexity 1 32 0 637 282 72 0 chrX 4421111 4421292 -172552848 - MIR SINE MIR -66 196 3 389 306 19 64 chrX 4421359 4421516 -172552624 - L2 LINE L2 -7 3265 3116 261 0 0 0 chrX 4421938 4421967 -172552173 + (T)n Simple_repeat Simple_repeat 1 29 0 818 129 0 168 chrX 4423298 4423500 -172550640 - MER45A DNA AcHobo -10 168 1 2430 93 0 0 chrX 4423808 4424118 -172550022 + AluSg SINE Alu 1 310 0 657 86 0 0 chrX 4424144 4424237 -172549903 + L1M3 LINE L1 5588 5680 -500 1659 141 160 10 chrX 4424237 4424549 -172549591 - MSTA LTR MaLR -69 359 1 440 254 137 50 chrX 4424880 4425377 -172548763 + L1M4 LINE L1 2922 3461 -2685 3122 150 46 28 chrX 4425471 4425607 -172548533 - L1MB4 LINE L1 -2 6178 6046 1965 148 34 0 chrX 4425607 4425904 -172548236 + AluSx SINE Alu 1 307 -5 3122 150 46 28 chrX 4425904 4426332 -172547808 - L1MB4 LINE L1 -134 6046 5604 1565 170 0 8 chrX 4426648 4426913 -172547227 + AluJb SINE Alu 39 301 -11 272 275 79 62 chrX 4426916 4427094 -172547046 + L1P4 LINE L1 5417 5597 -568 29 0 0 0 chrX 4427366 4427395 -172546745 + GC_rich Low_complexity Low_complexity 1 29 0 2013 128 0 0 chrX 4427590 4427864 -172546276 + AluSx SINE Alu 1 274 -38 214 230 37 118 chrX 4428686 4428821 -172545319 + L2 LINE L2 2832 2955 -358 3249 157 23 14 chrX 4428848 4429404 -172544736 - L1MB7 LINE L1 -11 6173 5613 3583 135 24 24 chrX 4429404 4429988 -172544152 + MER41B LTR ERV1 4 587 -48 1636 181 21 9 chrX 4429992 4430318 -172543822 - L1MB7 LINE L1 -565 5619 5290 359 317 0 25 chrX 4430351 4430471 -172543669 + L2 LINE L2 3197 3313 0 203 0 37 0 chrX 4430953 4430980 -172543160 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 475 264 289 0 chrX 4432137 4432338 -172541802 + MIR SINE MIR 2 260 -2 459 249 102 69 chrX 4432351 4432656 -172541484 + L1ME4a LINE L1 5790 6104 -17 3687 155 102 23 chrX 4433378 4434107 -172540033 + LTR48 LTR ERV1 2 787 0 835 134 0 24 chrX 4434420 4434547 -172539593 - FLAM_C SINE Alu -11 132 9 487 320 11 17 chrX 4434886 4435064 -172539076 + MER5A DNA MER1_type 7 183 -6 1149 179 6 35 chrX 4435114 4435437 -172538703 - MLT1A1 LTR MaLR 0 365 1 639 182 51 132 chrX 4435568 4435893 -172538247 + L1ME1 LINE L1 5177 5472 -694 856 155 0 0 chrX 4435915 4436044 -172538096 - FRAM SINE Alu -23 153 25 2861 200 59 15 chrX 4436086 4436752 -172537388 + L1ME1 LINE L1 5467 6161 -5 180 0 0 0 chrX 4436761 4436781 -172537359 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2341 96 0 19 chrX 4436914 4437226 -172536914 + AluSg1 SINE Alu 1 306 -3 209 195 0 0 chrX 4437669 4437710 -172536430 + A-rich Low_complexity Low_complexity 2 42 0 2684 187 27 32 chrX 4438820 4439414 -172534726 + L1ME3 LINE L1 5572 6162 0 188 297 33 44 chrX 4439561 4439652 -172534488 - L2 LINE L2 -18 3295 3206 2083 174 119 30 chrX 4440068 4440529 -172533611 - MLT1D LTR MaLR -3 502 1 987 137 0 46 chrX 4440825 4441000 -172533140 - MER20 DNA MER1_type -52 167 1 586 269 52 24 chrX 4441414 4441626 -172532514 + MIR SINE MIR 3 220 -42 742 286 49 53 chrX 4443538 4443822 -172530318 + L1ME4a LINE L1 5539 5822 -299 2359 82 0 16 chrX 4443822 4444125 -172530015 + AluSg SINE Alu 1 298 -12 742 286 49 53 chrX 4444125 4444409 -172529731 + L1ME4a LINE L1 5822 6105 -16 21 36 0 0 chrX 4444410 4444438 -172529702 + AT_rich Low_complexity Low_complexity 1 28 0 1742 177 7 13 chrX 4444520 4444819 -172529321 - AluJb SINE Alu -15 297 1 2187 82 4 0 chrX 4446313 4446581 -172527559 + AluSp SINE Alu 29 297 -16 229 25 0 50 chrX 4447120 4447160 -172526980 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 2069 91 4 0 chrX 4447986 4448250 -172525890 + AluSp SINE Alu 39 303 -10 307 274 230 22 chrX 4448647 4448782 -172525358 - MIR3 SINE MIR -25 183 21 249 57 0 0 chrX 4449030 4449065 -172525075 + (TTTTTG)n Simple_repeat Simple_repeat 3 37 0 5277 80 6 3 chrX 4449077 4449718 -172524422 + LTR9B LTR ERV1 1 643 -1 1844 140 0 14 chrX 4449718 4449997 -172524143 - AluSx SINE Alu -37 275 1 729 175 114 81 chrX 4450427 4450638 -172523502 - MER20 DNA MER1_type -1 218 1 658 229 98 71 chrX 4452307 4452730 -172521410 - L2 LINE L2 -124 3189 2743 2673 152 52 7 chrX 4452730 4453190 -172520950 - L1MB5 LINE L1 0 6174 5694 658 229 98 71 chrX 4453190 4453235 -172520905 - L2 LINE L2 -570 2743 2701 2090 97 20 23 chrX 4453613 4453913 -172520227 + AluSg1 SINE Alu 1 299 -10 300 332 135 31 chrX 4455110 4455435 -172518705 + L2 LINE L2 2914 3272 0 240 111 0 0 chrX 4455436 4455472 -172518668 + (TGGA)n Simple_repeat Simple_repeat 3 38 0 215 31 31 0 chrX 4455533 4455565 -172518575 + (TAGA)n Simple_repeat Simple_repeat 2 34 0 565 310 26 0 chrX 4455812 4455967 -172518173 - MIR3 SINE MIR -5 203 45 2301 89 0 35 chrX 4456186 4456501 -172517639 + AluSq SINE Alu 1 304 -9 684 261 101 10 chrX 4456502 4456709 -172517431 + MIR SINE MIR 31 256 -6 484 251 43 59 chrX 4456774 4456908 -172517232 + L1ME3A LINE L1 5986 6118 -52 2914 202 8 8 chrX 4456908 4457427 -172516713 - LTR40a LTR ERVL 0 519 1 484 251 43 59 chrX 4457427 4457479 -172516661 + L1ME3A LINE L1 6118 6169 -1 434 226 83 15 chrX 4457504 4457637 -172516503 + MER103 DNA DNA 5 146 -20 450 249 148 47 chrX 4457641 4457810 -172516330 - MER5A DNA MER1_type 0 189 4 594 260 13 20 chrX 4458436 4458586 -172515554 + MER5B DNA MER1_type 6 154 -24 438 339 44 22 chrX 4458988 4459215 -172514925 + MIR SINE MIR 31 262 0 447 217 181 12 chrX 4459265 4459431 -172514709 + MER5C DNA MER1_type 39 232 -92 313 179 265 8 chrX 4459454 4459571 -172514569 + MER5C DNA MER1_type 172 318 -6 2137 205 116 43 chrX 4459630 4459694 -172514446 - MLT1E LTR MaLR 0 593 535 1822 174 10 3 chrX 4459694 4460005 -172514135 - AluSq SINE Alu 0 313 1 2137 205 116 43 chrX 4460005 4460492 -172513648 - MLT1E LTR MaLR -58 535 2 219 167 0 0 chrX 4461214 4461256 -172512884 + (TGAA)n Simple_repeat Simple_repeat 3 44 0 2226 50 0 0 chrX 4461256 4461515 -172512625 + AluY SINE Alu 40 298 -13 1391 161 49 67 chrX 4462353 4462682 -172511458 - MER33 DNA MER1_type -1 323 1 385 129 14 43 chrX 4463508 4463578 -172510562 - MLT1G LTR MaLR -300 290 223 1962 152 0 13 chrX 4463736 4464051 -172510089 - AluSx SINE Alu -1 311 1 794 280 149 30 chrX 4464410 4464839 -172509301 - MLT1H1 LTR MaLR -8 547 68 1997 149 0 7 chrX 4464979 4465301 -172508839 - AluJb SINE Alu 0 312 1 2294 108 0 3 chrX 4465762 4466068 -172508072 + AluSx SINE Alu 1 305 -7 1428 188 48 72 chrX 4467047 4467218 -172506922 + Charlie1b DNA MER1_type 93 267 -2494 1930 164 7 0 chrX 4467218 4467528 -172506612 + AluJo SINE Alu 1 312 0 1428 188 48 72 chrX 4467528 4467798 -172506342 + Charlie1b DNA MER1_type 267 523 0 602 239 24 106 chrX 4467806 4467942 -172506198 + MIR SINE MIR 29 137 -125 2077 117 0 3 chrX 4467942 4468249 -172505891 + AluSx SINE Alu 1 306 0 602 239 24 106 chrX 4468249 4468366 -172505774 + MIR SINE MIR 137 262 0 274 326 70 8 chrX 4468363 4468492 -172505648 - L2 LINE L2 0 3272 3136 * 275 297 136 8 chrX 4468736 4468854 -172505286 - L2 LINE L2 -4 3268 3136 241 294 84 25 chrX 4469090 4469209 -172504931 - MIR SINE MIR -111 151 26 1849 174 0 0 chrX 4469278 4469572 -172504568 + AluJb SINE Alu 1 294 -18 1563 153 108 28 chrX 4469583 4469871 -172504269 + AluJo SINE Alu 2 312 0 2104 112 52 33 chrX 4469983 4470313 -172503827 + THE1B LTR MaLR 29 364 0 12985 80 1 3 chrX 4470313 4471896 -172502244 + THE1B-int LTR MaLR 1 1580 0 2637 78 50 31 chrX 4471896 4472253 -172501887 + THE1B LTR MaLR 1 364 0 204 40 0 0 chrX 4473256 4473281 -172500859 + (CA)n Simple_repeat Simple_repeat 2 26 0 854 158 0 0 chrX 4473287 4473407 -172500733 - FLAM_C SINE Alu -13 120 1 498 311 34 17 chrX 4473864 4474041 -172500099 - MER5A DNA MER1_type -5 184 5 727 280 36 40 chrX 4474909 4475159 -172498981 - MIR SINE MIR 0 262 14 487 225 129 66 chrX 4476029 4476234 -172497906 - L1MC5 LINE L1 -20 7941 7713 1370 140 33 9 chrX 4476234 4476448 -172497692 + MER20 DNA MER1_type 1 219 0 487 225 129 66 chrX 4476448 4476513 -172497627 - L1MC5 LINE L1 -248 7713 7654 256 277 0 60 chrX 4477675 4477758 -172496382 + LTR67 LTR ERVL 103 180 -377 183 156 0 0 chrX 4478421 4478453 -172495687 + GA-rich Low_complexity Low_complexity 2 33 0 551 277 148 61 chrX 4478539 4478918 -172495222 + L1MC4a LINE L1 5522 5933 -1875 28 29 0 0 chrX 4479110 4479145 -172494995 + AT_rich Low_complexity Low_complexity 1 35 0 1837 143 3 17 chrX 4479659 4479976 -172494164 + AluSx SINE Alu 1 313 0 1197 215 9 5 chrX 4481981 4482204 -172491936 - MER58A DNA MER1_type 0 224 1 2304 105 3 0 chrX 4482386 4482690 -172491450 - AluSp SINE Alu -8 305 1 187 368 0 0 chrX 4483053 4483121 -172491019 + L2 LINE L2 2411 2478 -836 2201 132 3 0 chrX 4483313 4483624 -172490516 + AluSx SINE Alu 1 312 0 392 194 223 109 chrX 4483684 4483931 -172490209 + ORSL DNA AcHobo 1 275 0 297 271 14 0 chrX 4484318 4484388 -172489752 - L2 LINE L2 0 3272 3202 1302 140 14 14 chrX 4485139 4485353 -172488787 - MER20 DNA MER1_type 0 219 6 484 314 18 0 chrX 4485471 4485640 -172488500 + MER5B DNA MER1_type 7 178 0 305 358 101 28 chrX 4485750 4485968 -172488172 - L2 LINE L2 -12 3260 3027 263 222 42 62 chrX 4486352 4486496 -172487644 - L1MC5 LINE L1 -37 7924 7784 1958 147 6 13 chrX 4487652 4487788 -172486352 + AluJb SINE Alu 1 136 -176 2024 115 6 43 chrX 4487788 4488110 -172486030 + AluSx SINE Alu 1 310 -2 1958 147 6 13 chrX 4488110 4488287 -172485853 + AluJb SINE Alu 136 312 0 1541 133 4 0 chrX 4490917 4491143 -172482997 - L1PA15 LINE L1 -4 6161 5935 2486 60 3 0 chrX 4492029 4492328 -172481812 + AluY SINE Alu 1 300 -11 460 267 193 41 chrX 4493822 4494185 -172479955 - L2 LINE L2 -2025 1289 872 557 293 39 6 chrX 4494215 4494396 -172479744 + MIR SINE MIR 8 194 -68 581 246 56 6 chrX 4494467 4494646 -172479494 - L2 LINE L2 -2464 850 663 237 200 18 0 chrX 4498280 4498335 -172475805 - PABL_A LTR ERV1 -183 477 422 267 173 0 0 chrX 4499029 4499081 -172475059 + (TG)n Simple_repeat Simple_repeat 2 53 0 224 210 0 16 chrX 4499107 4499169 -172474971 + (CATATA)n Simple_repeat Simple_repeat 3 63 0 1162 169 19 0 chrX 4499169 4499376 -172474764 - L1MC1 LINE L1 -10 6323 6113 242 318 95 16 chrX 4500236 4500362 -172473778 + MIR SINE MIR 125 260 -2 1859 143 66 9 chrX 4500381 4500716 -172473424 - L1MA4 LINE L1 -6 6294 5941 2297 96 3 3 chrX 4501804 4502107 -172472033 + AluSx SINE Alu 1 303 -9 231 118 0 0 chrX 4503457 4503491 -172470649 - L1ME1 LINE L1 -10 6156 6123 229 208 21 0 chrX 4503620 4503668 -172470472 + MIR3 SINE MIR 130 178 -30 570 240 72 50 chrX 4504685 4504906 -172469234 + L2 LINE L2 3088 3313 0 1346 247 29 18 chrX 4505098 4505482 -172468658 + L1ME1 LINE L1 5771 6161 -5 375 23 0 0 chrX 4507363 4507407 -172466733 + (TC)n Simple_repeat Simple_repeat 1 44 0 2362 62 23 13 chrX 4508581 4508888 -172465252 + AluY SINE Alu 2 311 0 330 305 133 17 chrX 4509641 4509874 -172464266 + L2 LINE L2 2712 2971 -343 1003 171 6 0 chrX 4509879 4510049 -172464091 + FRAM SINE Alu 4 174 -2 442 194 48 48 chrX 4510850 4510974 -172463166 + MIR SINE MIR 65 188 -74 1706 158 14 0 chrX 4511002 4511280 -172462860 + AluJo SINE Alu 1 282 -30 269 238 125 12 chrX 4511357 4511437 -172462703 - MIR3 SINE MIR -2 206 118 385 250 80 46 chrX 4511747 4511942 -172462198 + L1MB3 LINE L1 5522 5711 -410 1607 111 4 26 chrX 4511986 4512220 -172461920 - AluSg/x SINE Alu -3 309 81 3851 210 21 1 chrX 4512320 4513173 -172460967 - L1 LINE L1 -1282 4864 3993 1661 132 0 31 chrX 4513186 4513340 -172460800 - AluSx SINE Alu -24 288 144 444 37 0 0 chrX 4513340 4513394 -172460746 + (TG)n Simple_repeat Simple_repeat 2 55 0 1661 132 0 31 chrX 4513394 4513497 -172460643 - AluSx SINE Alu -168 144 39 955 209 4 53 chrX 4513597 4513841 -172460299 + L1MB3 LINE L1 5950 6181 -2 1030 288 104 32 chrX 4513897 4514646 -172459494 + L1M4 LINE L1 4471 5273 -873 188 256 0 0 chrX 4514881 4514920 -172459220 - L2 LINE L2 -20 3252 3214 1894 168 6 3 chrX 4515146 4515462 -172458678 + MER2 DNA MER2_type 28 344 -1 1717 172 84 3 chrX 4515861 4516244 -172457896 - Charlie1b DNA MER1_type -1 522 109 238 280 53 67 chrX 4516409 4516559 -172457581 + MER5A DNA MER1_type 2 149 -40 513 103 0 0 chrX 4516720 4516788 -172457352 - AluS SINE Alu -244 69 2 5453 126 57 32 chrX 4516792 4517808 -172456332 + MER4B-int LTR ERV1 3419 4459 -2139 1629 115 4 4 chrX 4517816 4518042 -172456098 - AluSg/x SINE Alu -14 298 73 2257 99 13 19 chrX 4518050 4518362 -172455778 + MER4A LTR ERV1 355 664 0 3931 144 49 68 chrX 4518848 4519021 -172455119 + MER4B-int LTR ERV1 1433 1608 -4990 2175 120 14 0 chrX 4519021 4519312 -172454828 - AluSx SINE Alu -17 295 1 3931 144 49 68 chrX 4519312 4520393 -172453747 + MER4B-int LTR ERV1 1608 2485 -4113 1017 68 83 0 chrX 4520398 4520530 -172453610 - AluSp/q SINE Alu -10 303 161 213 282 14 0 chrX 4521137 4521208 -172452932 + (TATATG)n Simple_repeat Simple_repeat 6 77 0 234 0 0 0 chrX 4521371 4521397 -172452743 + (CA)n Simple_repeat Simple_repeat 2 27 0 3720 123 0 29 chrX 4521408 4521660 -172452480 + L1P LINE L1 3497 3755 -2391 1750 155 54 0 chrX 4521660 4521937 -172452203 + AluSx SINE Alu 1 292 -20 3720 123 0 29 chrX 4521937 4522278 -172451862 + L1P LINE L1 3755 4073 -2073 475 162 338 7 chrX 4522529 4522671 -172451469 - MER5A DNA MER1_type 0 189 1 359 256 144 0 chrX 4522857 4522982 -172451158 + MIR SINE MIR 108 250 -12 220 0 27 54 chrX 4523239 4523276 -172450864 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 1920 164 0 10 chrX 4523295 4523607 -172450533 - AluJb SINE Alu -3 309 1 2417 224 36 18 chrX 4524063 4524665 -172449475 + L1MC4 LINE L1 7316 7928 -114 589 220 0 50 chrX 4524672 4524831 -172449309 + L1MC4 LINE L1 7892 8042 0 1486 224 97 84 chrX 4525246 4526106 -172448034 + L2 LINE L2 2284 3165 -148 4921 51 1 40 chrX 4526154 4526824 -172447316 + SVA Other Other 1 644 -742 229 83 0 125 chrX 4526924 4526972 -172447168 - Alu SINE Alu -68 65 24 628 64 0 0 chrX 4526987 4527065 -172447075 + LTR49 LTR ERV1 517 594 -1 362 246 133 74 chrX 4527065 4527268 -172446872 + MIR SINE MIR 47 261 -1 2130 141 0 3 chrX 4527599 4527905 -172446235 + AluJo SINE Alu 1 305 -7 2046 130 27 0 chrX 4528116 4528415 -172445725 + AluSx SINE Alu 1 307 -5 413 200 117 8 chrX 4528531 4528651 -172445489 + L1ME2 LINE L1 6023 6155 -9 237 234 16 16 chrX 4529098 4529162 -172444978 + CT-rich Low_complexity Low_complexity 1 64 0 288 0 0 0 chrX 4529241 4529273 -172444867 + (TG)n Simple_repeat Simple_repeat 2 33 0 2324 106 3 0 chrX 4529304 4529615 -172444525 + AluSx SINE Alu 1 312 0 828 140 78 39 chrX 4529678 4529857 -172444283 - MER53 DNA DNA -3 186 1 23 0 0 0 chrX 4531233 4531256 -172442884 + AT_rich Low_complexity Low_complexity 1 23 0 3834 138 87 43 chrX 4531504 4531821 -172442319 - MER4-int LTR ERV1 -4794 1804 1502 186 43 0 0 chrX 4531821 4531844 -172442296 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 3834 138 87 43 chrX 4531844 4532163 -172441977 - MER4-int LTR ERV1 -5096 1502 1198 369 0 0 0 chrX 4532163 4532204 -172441936 + (CA)n Simple_repeat Simple_repeat 2 42 0 3834 138 87 43 chrX 4532204 4532467 -172441673 - MER4-int LTR ERV1 -5400 1198 865 229 192 19 39 chrX 4532467 4532519 -172441621 - LTR49 LTR ERV1 -282 313 263 447 70 9 49 chrX 4532580 4532695 -172441445 - MER4-int LTR ERV1 -5769 829 654 2750 82 95 7 chrX 4532695 4533107 -172441033 + LTR7 LTR ERV1 1 448 -2 20591 86 31 21 chrX 4533109 4536064 -172438076 + HERVH LTR ERV1 1 2987 -4726 947 128 20 0 chrX 4536058 4536206 -172437934 + HERVH LTR ERV1 3140 3290 -4423 * 3365 110 10 6 chrX 4536196 4536696 -172437444 + HERVH LTR ERV1 3492 3993 -3720 4436 141 0 6 chrX 4536698 4537364 -172436776 + HERVH LTR ERV1 4488 5149 -2564 1418 130 19 0 chrX 4537365 4537581 -172436559 + HERVH LTR ERV1 5600 5819 -1894 2470 85 50 13 chrX 4537581 4537957 -172436183 + HERVH LTR ERV1 7324 7713 0 2770 85 95 5 chrX 4537957 4538368 -172435772 + LTR7 LTR ERV1 1 448 -2 224 181 0 34 chrX 4538376 4538443 -172435697 + A-rich Low_complexity Low_complexity 1 64 0 1321 71 0 0 chrX 4538566 4538721 -172435419 + AluSg/x SINE Alu 136 290 -22 2799 116 131 4 chrX 4538732 4539212 -172434928 - LTR49 LTR ERV1 -51 736 2 675 204 148 0 chrX 4540212 4540354 -172433786 + MER45A DNA AcHobo 16 178 0 186 250 17 0 chrX 4540398 4540458 -172433682 + MIR SINE MIR 202 262 0 * 227 241 145 0 chrX 4540450 4540533 -172433607 - MIR SINE MIR -107 155 61 209 206 14 82 chrX 4541310 4541383 -172432757 - L2 LINE L2 -208 3064 2997 * 271 280 25 63 chrX 4541372 4541402 -172432738 + MIR SINE MIR 36 66 -196 1854 190 69 52 chrX 4541402 4541897 -172432243 - MLT1D LTR MaLR 0 505 3 271 280 25 63 chrX 4541897 4542049 -172432091 + MIR SINE MIR 66 212 -50 748 150 105 46 chrX 4542164 4542317 -172431823 - MER63A DNA MER1_type -42 168 7 667 176 21 75 chrX 4543151 4543338 -172430802 + MER5B DNA MER1_type 1 177 -1 1600 90 202 101 chrX 4544051 4544418 -172429722 + MER4A LTR ERV1 1 404 -260 1395 170 4 48 chrX 4544519 4544790 -172429350 - AluJb SINE Alu -53 259 1 180 0 0 0 chrX 4544898 4544918 -172429222 + (TAA)n Simple_repeat Simple_repeat 1 20 0 466 335 56 0 chrX 4544927 4545143 -172428997 - MIR SINE MIR -17 245 19 181 302 79 0 chrX 4545180 4545243 -172428897 - MIR3 SINE MIR -14 194 127 2869 125 7 2 chrX 4545345 4545776 -172428364 - MER57B LTR ERV1 0 434 2 2490 82 0 0 chrX 4546939 4547242 -172426898 - AluSg SINE Alu -7 303 1 25 0 0 0 chrX 4547287 4547312 -172426828 + AT_rich Low_complexity Low_complexity 1 25 0 711 279 28 5 chrX 4547610 4547825 -172426315 - MIR SINE MIR -3 259 40 1611 208 13 92 chrX 4549161 4549228 -172424912 - MLT1D LTR MaLR 0 505 434 1423 120 10 0 chrX 4549228 4549436 -172424704 - L1PA15 LINE L1 -6 6159 5950 2300 105 3 0 chrX 4549444 4549748 -172424392 - AluSp SINE Alu -8 305 1 1611 208 13 92 chrX 4549748 4550147 -172423993 - MLT1D LTR MaLR -78 427 68 270 325 78 36 chrX 4550328 4550494 -172423646 - MIR SINE MIR 0 262 90 192 77 0 0 chrX 4550494 4550520 -172423620 + (TTA)n Simple_repeat Simple_repeat 2 27 0 890 146 0 0 chrX 4550520 4550643 -172423497 - FLAM_C SINE Alu -20 123 1 204 274 69 39 chrX 4551867 4551969 -172422171 + L2 LINE L2 3162 3266 -6 1308 202 27 0 chrX 4552015 4552273 -172421867 + L1MD3 LINE L1 7729 7993 -2 2383 70 3 3 chrX 4552491 4552792 -172421348 + AluY SINE Alu 1 301 -10 441 268 225 0 chrX 4554577 4554719 -172419421 + MER5A DNA MER1_type 9 182 -7 353 246 49 28 chrX 4555000 4555142 -172418998 + MIR3 SINE MIR 15 159 -49 228 250 114 71 chrX 4555170 4555310 -172418830 + L2 LINE L2 3066 3211 -102 468 80 23 34 chrX 4556343 4556431 -172417709 + (TTTC)n Simple_repeat Simple_repeat 2 88 0 341 85 0 0 chrX 4556831 4556878 -172417262 + MADE1 DNA Mariner 34 80 0 311 212 76 0 chrX 4556882 4556948 -172417192 - MIR SINE MIR -64 144 74 2564 75 0 0 chrX 4557897 4558205 -172415935 + AluSg SINE Alu 1 308 -2 2417 87 0 3 chrX 4558222 4558522 -172415618 + AluSg SINE Alu 1 299 -11 2188 130 0 0 chrX 4558848 4559149 -172414991 + AluSx SINE Alu 1 301 -11 22 35 0 0 chrX 4559577 4559606 -172414534 + AT_rich Low_complexity Low_complexity 1 29 0 6019 96 54 3 chrX 4559928 4560818 -172413322 - Tigger3b DNA MER2_type -2 1229 295 1780 160 0 0 chrX 4560823 4561086 -172413054 + AluJb SINE Alu 5 267 -45 198 302 0 0 chrX 4563174 4563227 -172410913 + L2 LINE L2 3219 3271 -1 480 281 34 92 chrX 4564757 4564995 -172409145 - MIR SINE MIR -3 259 36 1203 200 60 12 chrX 4565080 4565539 -172408601 + MLT1E1 LTR MaLR 109 650 -4 1174 228 62 53 chrX 4566383 4566560 -172407580 - MER58B DNA MER1_type -2079 341 158 4287 88 11 0 chrX 4566560 4567106 -172407034 - L1PA13 LINE L1 0 6163 5612 1174 228 62 53 chrX 4567106 4567266 -172406874 - MER58B DNA MER1_type -2262 158 1 22 0 0 0 chrX 4567589 4567611 -172406529 + AT_rich Low_complexity Low_complexity 1 22 0 841 192 0 0 chrX 4567611 4567736 -172406404 - FLAM_A SINE Alu -8 125 1 199 128 0 43 chrX 4568175 4568222 -172405918 + (GAAA)n Simple_repeat Simple_repeat 2 46 0 194 253 0 13 chrX 4568775 4568854 -172405286 + (TA)n Simple_repeat Simple_repeat 1 78 0 1251 175 29 107 chrX 4569857 4569957 -172404183 - L1MD3 LINE L1 -66 7929 7823 2100 140 0 3 chrX 4569957 4570257 -172403883 + AluSx SINE Alu 1 299 -13 1251 175 29 107 chrX 4570257 4570539 -172403601 - L1MD3 LINE L1 -172 7823 7577 3327 155 103 5 chrX 4570540 4571181 -172402959 + MER39 LTR ERV1 1 644 -9 1177 183 48 44 chrX 4571181 4571454 -172402686 - L1MD3 LINE L1 -412 7583 7310 2974 104 33 19 chrX 4571719 4571786 -172402354 - MSTC LTR MaLR 0 428 363 1386 167 61 64 chrX 4571786 4572097 -172402043 - AluJo SINE Alu 0 312 3 2974 104 33 19 chrX 4572097 4572451 -172401689 - MSTC LTR MaLR -65 363 1 1423 140 44 0 chrX 4572477 4572727 -172401413 + MER63 DNA MER1_type 767 1027 -33 2233 111 3 0 chrX 4573583 4573880 -172400260 - AluSp SINE Alu -15 298 1 2286 118 0 0 chrX 4574544 4574848 -172399292 + AluSx SINE Alu 1 304 -8 3065 214 84 23 chrX 4574860 4575677 -172398463 + L1MC4 LINE L1 7162 8028 -14 3515 48 65 5 chrX 4576086 4576503 -172397637 - MLT2A1 LTR ERVL -2 442 1 981 149 0 19 chrX 4576515 4576669 -172397471 + FRAM SINE Alu 1 143 -33 429 20 0 0 chrX 4576669 4576719 -172397421 + (CA)n Simple_repeat Simple_repeat 1 50 0 321 303 21 31 chrX 4576811 4576970 -172397170 - MIR SINE MIR -48 214 56 346 212 66 133 chrX 4577237 4577478 -172396662 + MER112 DNA MER1_type 28 252 -8 1439 220 137 39 chrX 4578752 4579212 -172394928 + MLT1D LTR MaLR 1 505 0 205 281 18 60 chrX 4579593 4579744 -172394396 + L2 LINE L2 2741 3272 0 294 289 157 0 chrX 4579783 4579904 -172394236 + L2 LINE L2 3133 3272 0 1176 123 0 35 chrX 4579914 4580085 -172394055 + AluJb SINE Alu 132 296 -16 191 317 83 0 chrX 4580847 4580907 -172393233 + L2 LINE L2 3168 3232 -40 2145 98 6 38 chrX 4580993 4581310 -172392830 + AluSx SINE Alu 1 307 -5 1738 144 43 20 chrX 4581451 4581750 -172392390 + AluJb SINE Alu 1 306 -6 198 261 235 17 chrX 4582785 4582904 -172391236 + MIR3 SINE MIR 58 202 -6 192 319 11 21 chrX 4587385 4587479 -172386661 + MIR SINE MIR 55 147 -61 521 242 152 0 chrX 4588675 4588840 -172385300 + MIR SINE MIR 73 262 0 42 48 0 0 chrX 4588948 4589011 -172385129 + AT_rich Low_complexity Low_complexity 1 63 0 202 129 0 0 chrX 4589165 4589196 -172384944 - MIR SINE MIR -68 140 110 932 87 16 0 chrX 4589389 4589515 -172384625 - AluSg/x SINE Alu -8 301 174 352 261 90 0 chrX 4590492 4590603 -172383537 - MIR SINE MIR -49 213 93 272 342 0 54 chrX 4590840 4590951 -172383189 - L3 LINE CR1 -13 1564 1460 684 249 109 13 chrX 4591132 4591361 -172382779 - MIR SINE MIR 0 262 12 1032 113 0 0 chrX 4591484 4591617 -172382523 - FLAM_C SINE Alu 0 133 1 2264 91 3 3 chrX 4591826 4592122 -172382018 - AluSc SINE Alu 0 309 14 738 221 127 0 chrX 4592503 4592661 -172381479 + MER45A DNA AcHobo 1 178 0 1839 137 68 34 chrX 4593626 4593948 -172380192 - MER1B DNA MER1_type 0 337 5 1360 190 135 5 chrX 4593961 4594340 -172379800 - Charlie4a DNA MER1_type -56 452 25 2372 45 0 14 chrX 4594414 4594729 -172379411 - AluY SINE Alu 0 311 1 316 292 31 45 chrX 4595066 4595220 -172378920 - MIR SINE MIR -66 142 42 203 138 0 0 chrX 4595456 4595485 -172378655 + (TGG)n Simple_repeat Simple_repeat 1 29 0 207 0 0 0 chrX 4595592 4595615 -172378525 + (T)n Simple_repeat Simple_repeat 1 23 0 374 252 0 55 chrX 4595834 4595961 -172378179 + MER77 LTR ERV1 66 185 -420 974 251 102 91 chrX 4595994 4596545 -172377595 + MER21B LTR ERV1 140 696 -167 196 291 47 23 chrX 4596603 4596689 -172377451 - MIR SINE MIR -62 200 113 2397 59 7 10 chrX 4596807 4597111 -172377029 + AluSq SINE Alu 1 303 -10 467 256 66 44 chrX 4597197 4597334 -172376806 - L2 LINE L2 -1 3312 3173 6083 31 1 1 chrX 4597354 4598031 -172376109 - SVA Other Other -1 1385 709 368 338 65 78 chrX 4598719 4599180 -172374960 - L2 LINE L2 0 3272 2818 246 273 189 34 chrX 4599228 4599466 -172374674 - L2 LINE L2 -609 2705 2431 2037 211 45 5 chrX 4600212 4600634 -172373506 + MLT1C LTR MaLR 2 440 -27 302 235 141 0 chrX 4600660 4600745 -172373395 - MIR3 SINE MIR -30 178 82 1293 149 8 47 chrX 4600992 4601081 -172373059 - L1MB7 LINE L1 -80 6104 6016 844 157 3 138 chrX 4601081 4601296 -172372844 - L1MB7 LINE L1 -288 5896 5890 17392 27 0 1 chrX 4601296 4603995 -172370145 - L1PA3 LINE L1 -3 6152 3457 844 157 3 138 chrX 4603995 4604135 -172370005 - L1MB7 LINE L1 -294 5890 5733 2808 150 28 78 chrX 4604363 4604461 -172369679 - LTR36 LTR ERV1 -2 609 508 5842 79 19 1 chrX 4604461 4605230 -172368910 - L1MA1 LINE L1 0 6302 5520 2808 150 28 78 chrX 4605230 4605730 -172368410 - LTR36 LTR ERV1 -103 508 41 191 185 0 93 chrX 4606002 4606056 -172368084 + L2 LINE L2 3219 3267 -5 313 179 0 18 chrX 4607377 4607433 -172366707 + MLT1E LTR MaLR 1 55 -487 962 196 141 28 chrX 4607558 4607988 -172366152 + MLT1E LTR MaLR 81 593 0 2025 140 0 3 chrX 4611375 4611675 -172362465 + AluJo SINE Alu 1 299 -13 537 290 78 42 chrX 4612083 4612300 -172361840 - MIR SINE MIR -34 228 4 260 204 0 0 chrX 4613013 4613057 -172361083 + MLT1E2 LTR MaLR 1 44 -580 1664 236 73 52 chrX 4613103 4613581 -172360559 + MLT1E2 LTR MaLR 139 626 0 290 298 0 75 chrX 4613995 4614072 -172360068 - L2 LINE L2 -176 3096 3015 2022 89 4 0 chrX 4614072 4614329 -172359811 + AluSp SINE Alu 44 301 -12 290 298 0 75 chrX 4614329 4614438 -172359702 - L2 LINE L2 -257 3015 2929 240 273 15 0 chrX 4614620 4614686 -172359454 + L2 LINE L2 1885 1951 -1363 1701 152 17 17 chrX 4614744 4615041 -172359099 + AluJb SINE Alu 1 297 -15 1897 118 3 17 chrX 4615068 4615357 -172358783 - L1MA8 LINE L1 -7 6284 6000 940 271 93 31 chrX 4615452 4615872 -172358268 - L2 LINE L2 -697 2617 2172 359 331 108 14 chrX 4615878 4616165 -172357975 - L1 LINE L1 -1051 5095 4782 1014 281 62 31 chrX 4616204 4616698 -172357442 + L1M3 LINE L1 5293 5838 -330 337 265 282 6 chrX 4616698 4616868 -172357272 - L2 LINE L2 -2 3311 3095 1072 194 5 0 chrX 4616868 4617064 -172357076 - L1MC3 LINE L1 -364 7421 7225 264 100 0 0 chrX 4618116 4618156 -172355984 + (GA)n Simple_repeat Simple_repeat 2 41 0 345 244 85 104 chrX 4618197 4618361 -172355779 + HAL1 LINE L1 61 221 -2286 1944 190 53 31 chrX 4618564 4619016 -172355124 + MLT1C LTR MaLR 3 464 -3 186 212 0 0 chrX 4619967 4620000 -172354140 - L2 LINE L2 -2180 1134 1102 195 42 0 0 chrX 4620326 4620350 -172353790 + (CAAAAA)n Simple_repeat Simple_repeat 1 24 0 366 261 43 26 chrX 4620360 4620475 -172353665 - MIR3 SINE MIR -52 156 40 1541 99 85 0 chrX 4620806 4621018 -172353122 + MER30 DNA MER1_type 1 230 0 649 273 23 11 chrX 4621554 4621730 -172352410 - MER5B DNA MER1_type 0 178 1 1992 133 0 3 chrX 4621842 4622152 -172351988 - AluSx SINE Alu 0 309 1 2267 64 0 0 chrX 4622383 4622650 -172351490 + AluSx SINE Alu 1 267 -45 237 297 144 17 chrX 4624030 4624148 -172349992 + L2 LINE L2 3140 3272 0 1671 185 102 6 chrX 4624263 4624615 -172349525 + MER58D DNA MER1_type 1 386 0 1938 140 4 4 chrX 4625025 4625335 -172348805 + AluJb SINE Alu 4 313 0 297 0 0 0 chrX 4625495 4625513 -172348627 + (TG)n Simple_repeat Simple_repeat 1 51 0 297 0 0 0 chrX 4625513 4625546 -172348594 + (TG)n Simple_repeat Simple_repeat 2 34 0 575 203 12 49 chrX 4626042 4626205 -172347935 + MIR SINE MIR 106 262 0 306 248 167 0 chrX 4626991 4627113 -172347027 - MIR SINE MIR -62 146 16 236 54 54 0 chrX 4627221 4627258 -172346882 + (TGGA)n Simple_repeat Simple_repeat 4 42 0 499 299 91 32 chrX 4627328 4627733 -172346407 - L1ME4a LINE L1 -3 6118 5690 1802 122 20 0 chrX 4628619 4628905 -172345235 - AluJo SINE Alu 0 316 26 2417 38 42 0 chrX 4628947 4629236 -172344904 - AluY SINE Alu -9 302 2 1908 120 174 23 chrX 4629720 4630071 -172344069 - MER4A LTR ERV1 0 664 261 605 124 21 10 chrX 4630071 4630168 -172343972 - MER4A LTR ERV1 -566 98 1 220 383 109 34 chrX 4630710 4630885 -172343255 + MER5A DNA MER1_type 1 188 -1 822 179 19 26 chrX 4630891 4631047 -172343093 + MER5A DNA MER1_type 31 185 -4 862 201 29 6 chrX 4631074 4631248 -172342892 + MER5B DNA MER1_type 1 178 0 1261 183 117 18 chrX 4631286 4631559 -172342581 + AluJo SINE Alu 1 300 -12 539 210 0 0 chrX 4631681 4631781 -172342359 - MER5A DNA MER1_type -81 108 9 321 322 33 39 chrX 4631832 4632012 -172342128 + L2 LINE L2 2235 2413 -901 391 301 9 9 chrX 4632180 4632293 -172341847 + L2 LINE L2 3158 3270 -2 459 52 0 0 chrX 4632294 4632352 -172341788 + (TGGA)n Simple_repeat Simple_repeat 1 58 0 2036 116 41 7 chrX 4632480 4632774 -172341366 - AluSx SINE Alu -8 304 1 205 188 0 0 chrX 4632796 4632828 -172341312 + L2 LINE L2 3201 3232 -81 240 304 14 0 chrX 4633523 4633618 -172340522 + (CA)n Simple_repeat Simple_repeat 1 96 0 492 86 0 0 chrX 4633620 4633690 -172340450 + (TA)n Simple_repeat Simple_repeat 2 71 0 2373 96 3 0 chrX 4634589 4634890 -172339250 + AluSx SINE Alu 1 302 -10 28 86 0 0 chrX 4634919 4634989 -172339151 + AT_rich Low_complexity Low_complexity 1 70 0 236 220 0 34 chrX 4635115 4635174 -172338966 + L1MC4 LINE L1 6647 6703 -1339 247 208 62 115 chrX 4636442 4636572 -172337568 + MIR SINE MIR 91 213 -49 1643 105 5 0 chrX 4638190 4638409 -172335731 - AluSg/x SINE Alu -10 302 83 2388 84 7 0 chrX 4640784 4641092 -172333048 - AluSg SINE Alu 0 310 1 316 244 52 0 chrX 4645162 4645247 -172328893 - MIR SINE MIR -51 157 68 449 254 59 0 chrX 4645458 4645576 -172328564 + MER94 DNA DNA 2 126 -8 1790 151 10 10 chrX 4645932 4646230 -172327910 + AluJo SINE Alu 3 300 -12 488 173 0 0 chrX 4646599 4646674 -172327466 - AluJ/FLAM SINE Alu -236 76 2 529 134 116 71 chrX 4647524 4647636 -172326504 + MER63 DNA MER1_type 1 743 -93 710 320 76 12 chrX 4647784 4648273 -172325867 + L2 LINE L2 2544 3068 -245 401 247 22 0 chrX 4648307 4648396 -172325744 - MIR SINE MIR 0 262 172 1031 195 44 22 chrX 4648405 4648631 -172325509 - MER46C DNA MER2_type 0 338 108 49 107 0 0 chrX 4648631 4648827 -172325313 + AT_rich Low_complexity Low_complexity 1 196 0 235 193 101 118 chrX 4648827 4648946 -172325194 - MER46C DNA MER2_type -203 135 19 2187 113 0 0 chrX 4648947 4649265 -172324875 - AluSq SINE Alu 0 318 1 376 61 0 0 chrX 4649272 4649321 -172324819 - MIR SINE MIR -107 155 107 368 256 136 42 chrX 4649341 4649532 -172324608 + L2 LINE L2 3105 3313 0 242 258 101 22 chrX 4650037 4650126 -172324014 - L2 LINE L2 -40 3232 3137 1033 267 44 85 chrX 4650318 4650846 -172323294 + MLT1J LTR MaLR 6 511 0 833 196 101 6 chrX 4651539 4651707 -172322433 - MER3 DNA MER1_type -25 184 1 509 176 133 66 chrX 4651721 4651931 -172322209 - MER58 DNA MER1_type -5 2415 1 207 272 109 11 chrX 4652180 4652272 -172321868 + L2 LINE L2 3208 3308 -5 343 202 0 140 chrX 4652820 4652934 -172321206 - MER58 DNA MER1_type -243 98 1 255 212 136 68 chrX 4653589 4653721 -172320419 - MIR SINE MIR -14 248 108 2185 120 3 0 chrX 4653952 4654253 -172319887 + AluSx SINE Alu 1 302 -10 3057 82 0 3 chrX 4654348 4654713 -172319427 - THE1B LTR MaLR 0 364 1 387 237 52 21 chrX 4654801 4654898 -172319242 - L2 LINE L2 -3 3269 3170 223 326 11 21 chrX 4655559 4655654 -172318486 + MIR3 SINE MIR 114 207 -1 2110 109 0 0 chrX 4655867 4656172 -172317968 - AluSx SINE Alu 0 305 1 315 313 59 84 chrX 4656222 4656545 -172317595 + L1ME4a LINE L1 5718 6032 -89 1347 307 48 13 chrX 4656716 4657489 -172316651 - L2 LINE L2 -8 3305 2507 233 221 128 12 chrX 4657503 4657589 -172316551 - L2 LINE L2 -1482 1832 1737 246 156 0 0 chrX 4657634 4657679 -172316461 + CT-rich Low_complexity Low_complexity 1 45 0 714 218 184 49 chrX 4657682 4658030 -172316110 + MLT1G LTR MaLR 196 590 0 1076 203 98 67 chrX 4659298 4659614 -172314526 - MER58B DNA MER1_type -13 328 3 274 308 29 0 chrX 4659964 4660068 -172314072 + MIR SINE MIR 49 155 -107 577 245 39 101 chrX 4660205 4660452 -172313688 - L1ME4a LINE L1 -225 5896 5670 3194 67 15 0 chrX 4660452 4660854 -172313286 - L1PA10 LINE L1 -1 6167 5760 577 245 39 101 chrX 4660854 4660912 -172313228 - L1ME4a LINE L1 -451 5670 5610 241 333 0 70 chrX 4661592 4661732 -172312408 - MIR SINE MIR -71 191 61 2047 153 80 49 chrX 4661732 4662184 -172311956 + MER31B LTR ERV1 1 466 0 241 333 0 70 chrX 4662184 4662199 -172311941 - MIR SINE MIR -201 61 47 24 32 0 0 chrX 4662951 4662982 -172311158 + AT_rich Low_complexity Low_complexity 1 31 0 1183 178 84 0 chrX 4663364 4663566 -172310574 - MER20 DNA MER1_type 0 219 1 491 306 33 0 chrX 4663944 4664127 -172310013 - MIR SINE MIR 0 262 74 798 241 105 8 chrX 4664374 4664805 -172309335 + LTR33 LTR ERVL 14 512 -9 404 289 19 13 chrX 4664815 4664971 -172309169 + L1M4 LINE L1 4490 4646 -1500 434 188 20 30 chrX 4665024 4665125 -172309015 + MER20B DNA MER1_type 682 781 -2 2200 116 0 3 chrX 4665374 4665677 -172308463 - AluSg SINE Alu -8 302 1 43809 50 2 1 chrX 4665768 4671903 -172302237 + L1PA5 LINE L1 3 6145 -9 2867 10 0 0 chrX 4672553 4672864 -172301276 - AluYa5 SINE Alu 0 311 1 1361 108 128 5 chrX 4673153 4673357 -172300783 - MER30 DNA MER1_type -1 229 1 727 52 0 4 chrX 4673568 4673667 -172300473 + L1PA5 LINE L1 6044 6142 -13 225 0 0 0 chrX 4673667 4673692 -172300448 + (TA)n Simple_repeat Simple_repeat 2 26 0 207 0 0 0 chrX 4673984 4674007 -172300133 + (TTTG)n Simple_repeat Simple_repeat 1 23 0 1878 155 4 0 chrX 4674011 4674288 -172299852 - AluSx SINE Alu -34 278 1 451 296 50 5 chrX 4674742 4674962 -172299178 - L1MC4 LINE L1 0 8042 7813 31048 114 16 54 chrX 4675006 4681410 -172292730 + L1PA8 LINE L1 12 6166 -6 401 214 0 31 chrX 4682031 4682190 -172291950 + GA-rich Low_complexity Low_complexity 3 156 0 192 40 0 0 chrX 4682328 4682353 -172291787 + (GA)n Simple_repeat Simple_repeat 2 26 0 3300 160 12 35 chrX 4682361 4682911 -172291229 - MER68 LTR ERV1 0 562 24 2170 102 10 3 chrX 4682911 4683204 -172290936 - AluSq SINE Alu -18 295 1 3300 160 12 35 chrX 4683204 4683228 -172290912 - MER68 LTR ERV1 -538 24 1 335 108 31 0 chrX 4683241 4683306 -172290834 + (CATA)n Simple_repeat Simple_repeat 2 68 0 536 308 92 15 chrX 4683351 4683679 -172290461 - L1MC4a LINE L1 -1771 6037 5685 587 108 63 36 chrX 4683966 4684077 -172290063 + MER53 DNA DNA 76 189 0 710 216 0 0 chrX 4684111 4684236 -172289904 - FLAM_C SINE Alu -7 126 2 267 217 72 43 chrX 4684328 4684397 -172289743 + MIR3 SINE MIR 5 75 -133 2453 90 0 0 chrX 4684443 4684754 -172289386 + AluSq SINE Alu 1 311 -2 524 228 188 22 chrX 4686828 4687120 -172287020 - MLT1H LTR MaLR -2 553 229 290 293 47 28 chrX 4687161 4687267 -172286873 - MLT1H LTR MaLR -415 127 20 21 0 0 0 chrX 4687682 4687703 -172286437 + AT_rich Low_complexity Low_complexity 1 21 0 281 266 175 22 chrX 4687766 4687945 -172286195 + L1ME LINE L1 5412 5577 -544 554 276 49 6 chrX 4688164 4688327 -172285813 - MER5B DNA MER1_type -6 172 3 207 0 0 0 chrX 4688403 4688426 -172285714 + (A)n Simple_repeat Simple_repeat 1 23 0 2063 156 0 0 chrX 4688550 4688857 -172285283 - AluJo SINE Alu -5 307 1 319 85 21 0 chrX 4689439 4689486 -172284654 - MER5A DNA MER1_type -141 48 1 2174 123 0 10 chrX 4689811 4690139 -172284001 - AluSx SINE Alu 0 312 1 486 305 13 26 chrX 4690152 4690306 -172283834 + MIR3 SINE MIR 54 205 -3 32665 107 10 59 chrX 4690395 4693038 -172281102 + L1PA7 LINE L1 13 2784 -3370 2241 119 3 0 chrX 4693038 4693350 -172280790 + AluSp SINE Alu 1 313 0 32665 107 10 59 chrX 4693350 4697163 -172276977 + L1PA7 LINE L1 2784 6139 -15 1978 137 10 10 chrX 4697296 4697595 -172276545 + AluSq SINE Alu 1 299 -14 2002 141 3 25 chrX 4697670 4697845 -172276295 - AluJb SINE Alu 0 312 146 2433 70 3 0 chrX 4697845 4698147 -172275993 - AluY SINE Alu -8 303 1 2002 141 3 25 chrX 4698147 4698290 -172275850 - AluJb SINE Alu -166 146 1 284 179 0 19 chrX 4698462 4698723 -172275417 + AluJo SINE Alu 1 338 0 709 125 16 16 chrX 4698942 4699070 -172275070 + MER20 DNA MER1_type 5 132 -87 2348 77 3 0 chrX 4699843 4700130 -172274010 + AluSp SINE Alu 3 290 -23 306 50 0 0 chrX 4700283 4700323 -172273817 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 1713 190 103 60 chrX 4700636 4701100 -172273040 - MER31A LTR ERV1 0 485 2 795 177 8 15 chrX 4701283 4701413 -172272727 + FLAM_A SINE Alu 2 130 -3 386 119 0 15 chrX 4701423 4701490 -172272650 + (GGAA)n Simple_repeat Simple_repeat 3 68 0 745 170 0 0 chrX 4702168 4702280 -172271860 + MER81 DNA DNA 3 114 0 372 337 47 18 chrX 4702347 4702516 -172271624 - MIR3 SINE MIR -19 189 16 806 199 0 0 chrX 4702801 4702932 -172271208 - FLAM_A SINE Alu -2 131 1 1890 109 12 4 chrX 4702956 4703212 -172270928 - AluSx SINE Alu -27 285 28 2601 40 0 0 chrX 4703541 4703844 -172270296 - AluY SINE Alu -8 303 1 198 0 0 0 chrX 4704402 4704424 -172269716 + (T)n Simple_repeat Simple_repeat 1 22 0 383 268 142 0 chrX 4704673 4704800 -172269340 - MIR SINE MIR -110 152 8 1088 231 47 0 chrX 4707900 4708112 -172266028 - MER58A DNA MER1_type 0 224 3 292 262 63 74 chrX 4708228 4708400 -172265740 - MIR3 SINE MIR -61 147 1 246 81 0 0 chrX 4708501 4708538 -172265602 + (TCTA)n Simple_repeat Simple_repeat 2 38 0 302 114 0 0 chrX 4708538 4708582 -172265558 + U2 snRNA snRNA 19 62 -126 2947 177 18 14 chrX 4708584 4709149 -172264991 - L1MB4 LINE L1 -19 6161 5595 1047 170 95 10 chrX 4709751 4709951 -172264189 - MER20 DNA MER1_type 0 219 3 835 223 19 43 chrX 4709952 4710163 -172263977 - MER33 DNA MER1_type -114 210 5 625 184 40 24 chrX 4711218 4711343 -172262797 + FLAM_A SINE Alu 1 127 -6 2319 104 10 0 chrX 4711815 4712123 -172262017 - AluSp SINE Alu -2 311 1 2890 195 26 18 chrX 4712131 4712701 -172261439 - L1MB5 LINE L1 -2 6172 5598 192 77 0 0 chrX 4712715 4712741 -172261399 + (T)n Simple_repeat Simple_repeat 1 26 0 482 293 78 28 chrX 4713171 4713458 -172260682 + L1MEc LINE L1 1500 1751 -861 2157 128 0 3 chrX 4713607 4713903 -172260237 + AluJb SINE Alu 1 295 -17 270 247 43 0 chrX 4713904 4713997 -172260143 + L1MEc LINE L1 2208 2304 -4092 25 0 0 0 chrX 4714194 4714219 -172259921 + AT_rich Low_complexity Low_complexity 1 25 0 2242 106 3 0 chrX 4714267 4714570 -172259570 + AluSx SINE Alu 1 304 -8 225 175 208 58 chrX 4715310 4715430 -172258710 + L1ME4a LINE L1 5983 6120 -1 653 263 82 47 chrX 4716581 4716946 -172257194 + L1MB7 LINE L1 5438 5815 -1993 1360 164 26 74 chrX 4717290 4717556 -172256584 + L1MB7 LINE L1 5885 6135 -49 2287 117 0 0 chrX 4717556 4717865 -172256275 - AluSx SINE Alu -3 309 1 1360 164 26 74 chrX 4717865 4717910 -172256230 + L1MB7 LINE L1 6135 6181 -3 1066 177 0 0 chrX 4719342 4719506 -172254634 - FRAM SINE Alu -2 164 1 237 33 0 0 chrX 4720219 4720249 -172253891 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 237 333 10 10 chrX 4721641 4721743 -172252397 + MIR SINE MIR 68 169 -93 243 0 0 0 chrX 4721894 4721921 -172252219 + (CA)n Simple_repeat Simple_repeat 2 28 0 277 261 19 64 chrX 4722025 4722047 -172252093 + L1ME4a LINE L1 5926 5947 -174 2413 77 0 0 chrX 4722047 4722344 -172251796 + AluY SINE Alu 5 301 -10 277 261 19 64 chrX 4722344 4722478 -172251662 + L1ME4a LINE L1 5947 6075 -46 840 168 183 208 chrX 4722808 4723140 -172251000 + MLT1A1 LTR MaLR 1 323 -73 1987 69 126 0 chrX 4723140 4723402 -172250738 - AluSp SINE Alu -17 296 2 840 168 183 208 chrX 4723402 4723473 -172250667 + MLT1A1 LTR MaLR 323 394 -2 2378 81 0 16 chrX 4724111 4724419 -172249721 - AluSx SINE Alu -9 303 1 1774 220 15 3 chrX 4724475 4724812 -172249328 + MER58B DNA MER1_type 1 341 0 331 314 28 28 chrX 4724822 4724989 -172249151 - MIR SINE MIR -28 180 13 241 260 68 14 chrX 4725024 4725097 -172249043 - L1ME LINE L1 -297 5824 5748 2283 113 0 0 chrX 4725768 4726061 -172248079 + AluSx SINE Alu 1 293 -19 465 267 33 0 chrX 4726240 4726360 -172247780 - MER94 DNA DNA -1 133 10 1527 220 121 20 chrX 4726437 4726615 -172247525 + MLT1D LTR MaLR 5 164 -341 1897 137 3 36 chrX 4726615 4726922 -172247218 + AluJo SINE Alu 2 298 -14 1527 220 121 20 chrX 4726922 4727198 -172246942 + MLT1D LTR MaLR 164 505 0 2046 101 22 4 chrX 4727571 4727884 -172246256 + AluSq SINE Alu 1 318 0 2338 86 0 7 chrX 4728301 4728614 -172245526 + AluSx SINE Alu 1 312 0 281 269 201 52 chrX 4728680 4728929 -172245211 + L3 LINE CR1 652 937 -640 393 22 0 0 chrX 4728942 4728988 -172245152 + (CA)n Simple_repeat Simple_repeat 2 47 0 1534 156 31 49 chrX 4729018 4729306 -172244834 + MER58 DNA MER1_type 1 283 -58 1530 206 108 30 chrX 4729691 4730124 -172244016 + MLT1C LTR MaLR 1 467 0 1224 172 21 21 chrX 4730309 4730547 -172243593 - L1MD2 LINE L1 0 6359 6122 2893 160 66 19 chrX 4731051 4731582 -172242558 - MER68 LTR ERV1 -4 558 3 1523 259 156 31 chrX 4731597 4732380 -172241760 - HAL1 LINE L1 0 2507 1627 2123 124 3 3 chrX 4732835 4733134 -172241006 - AluSx SINE Alu -13 299 1 1093 157 9 65 chrX 4733190 4733406 -172240734 + MER46A DNA MER2_type 32 235 -1 2413 73 16 3 chrX 4733693 4733996 -172240144 + AluSp SINE Alu 1 307 -6 896 147 0 29 chrX 4734030 4734166 -172239974 + FLAM_A SINE Alu 1 132 -1 2353 171 10 10 chrX 4734395 4734786 -172239354 + MSTD LTR MaLR 1 391 -5 237 195 0 0 chrX 4734836 4734877 -172239263 + MER58 DNA MER1_type 38 78 -137 1405 174 156 44 chrX 4734878 4735268 -172238872 + MLT1D LTR MaLR 2 435 -70 477 165 13 0 chrX 4735273 4735352 -172238788 + MER58 DNA MER1_type 2341 2420 0 1465 268 92 15 chrX 4735673 4736151 -172237989 + MLT1G1 LTR MaLR 74 588 -7 862 181 82 16 chrX 4737362 4737544 -172236596 - L1M4 LINE L1 -1052 5094 4901 202 312 130 7 chrX 4737945 4738099 -172236041 + MER5B DNA MER1_type 1 173 -5 22 35 0 0 chrX 4738428 4738457 -172235683 + GC_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chrX 4738565 4738588 -172235552 + GC_rich Low_complexity Low_complexity 1 23 0 246 256 0 23 chrX 4738734 4738820 -172235320 + (CGG)n Simple_repeat Simple_repeat 2 85 0 297 250 9 37 chrX 4738828 4738936 -172235204 + G-rich Low_complexity Low_complexity 4 108 0 1503 231 43 5 chrX 4739191 4739563 -172234577 + MER58D DNA MER1_type 1 386 0 1320 158 29 0 chrX 4741057 4741266 -172232874 - MER20 DNA MER1_type -3 216 2 421 193 45 23 chrX 4741291 4741379 -172232761 - MLT1G1 LTR MaLR -282 313 224 258 158 0 0 chrX 4741423 4741461 -172232679 - MLT1I LTR MaLR -274 135 98 204 296 28 14 chrX 4741806 4741877 -172232263 + L2 LINE L2 3238 3309 -4 276 330 52 0 chrX 4741896 4741993 -172232147 - MIR SINE MIR -88 120 19 1445 180 46 4 chrX 4742066 4742378 -172231762 - MER33 DNA MER1_type -11 313 1 287 275 150 31 chrX 4742650 4742810 -172231330 - L1MC4 LINE L1 -54 7988 7810 * 437 176 118 0 chrX 4742780 4742882 -172231258 + L1MB8 LINE L1 4926 5039 -1107 1484 101 15 0 chrX 4742882 4743175 -172230965 - AluJb SINE Alu 0 405 110 4192 174 29 55 chrX 4743198 4743389 -172230751 + L1MB8 LINE L1 5007 5201 -977 2418 79 0 10 chrX 4743389 4743693 -172230447 + AluSg SINE Alu 1 301 -9 4192 174 29 55 chrX 4743693 4743818 -172230322 + L1MB8 LINE L1 5201 5328 -850 3760 136 80 0 chrX 4743818 4744419 -172229721 + L1MC1 LINE L1 5685 6333 0 4192 174 29 55 chrX 4744419 4744498 -172229642 + L1MB8 LINE L1 5328 5408 -770 2357 96 0 3 chrX 4744498 4744810 -172229330 + AluSx SINE Alu 1 311 -1 4192 174 29 55 chrX 4744810 4745605 -172228535 + L1MB8 LINE L1 5408 6177 -1 329 251 101 84 chrX 4745745 4745924 -172228216 - L1MC5 LINE L1 -781 7180 6999 * 458 249 64 115 chrX 4745918 4746094 -172228046 + L1MC4 LINE L1 6780 6935 -1107 660 208 24 8 chrX 4746094 4746219 -172227921 + FLAM_A SINE Alu 1 127 -6 458 249 64 115 chrX 4746219 4746355 -172227785 + L1MC4 LINE L1 6935 7076 -966 438 256 137 21 chrX 4746955 4747115 -172227025 - MIR SINE MIR -62 146 2 398 287 115 13 chrX 4747264 4747421 -172226719 + L2 LINE L2 2118 2290 -1024 812 286 25 0 chrX 4747429 4747632 -172226508 + MER58A DNA MER1_type 1 208 -16 306 296 136 70 chrX 4747680 4747951 -172226189 + L2 LINE L2 2395 2647 -666 2183 130 0 0 chrX 4747951 4748259 -172225881 - AluSx SINE Alu -4 308 1 306 296 136 70 chrX 4748259 4748520 -172225620 + L2 LINE L2 2647 2889 -424 2613 59 0 0 chrX 4748520 4748826 -172225314 - AluY SINE Alu -5 306 1 306 296 136 70 chrX 4748826 4749110 -172225030 + L2 LINE L2 2889 3267 -46 1028 157 52 33 chrX 4749194 4749404 -172224736 - MER58 DNA MER1_type -126 215 2 276 30 0 0 chrX 4749730 4749763 -172224377 + (CA)n Simple_repeat Simple_repeat 2 34 0 416 285 162 1 chrX 4750762 4750939 -172223201 - MIR SINE MIR -19 243 41 28 0 0 0 chrX 4751844 4751872 -172222268 + AT_rich Low_complexity Low_complexity 1 28 0 448 187 0 0 chrX 4752051 4752126 -172222014 + MER116 DNA Mariner 3 77 -3 1240 160 38 9 chrX 4752213 4752426 -172221714 + MER20 DNA MER1_type 1 219 0 1333 203 29 8 chrX 4753026 4753328 -172220812 - L1MD3 LINE L1 -1 7994 7600 2023 121 0 46 chrX 4753508 4753815 -172220325 - AluSx SINE Alu -19 293 1 471 301 7 0 chrX 4753817 4753960 -172220180 + Charlie8 DNA MER1_type 93 236 -2181 1890 162 0 10 chrX 4754784 4755086 -172219054 - AluJb SINE Alu -13 299 1 1266 70 13 0 chrX 4755613 4755769 -172218371 - L1PA10 LINE L1 -4 6164 6007 680 270 64 15 chrX 4755875 4756079 -172218061 - MIR SINE MIR -36 226 13 2217 111 3 0 chrX 4756438 4756735 -172217405 + AluSq SINE Alu 1 298 -15 25 31 0 0 chrX 4756868 4756900 -172217240 + AT_rich Low_complexity Low_complexity 1 32 0 711 150 142 0 chrX 4756900 4757013 -172217127 - AluSg SINE Alu -180 130 2 366 267 56 11 chrX 4757762 4757852 -172216288 - MER91C DNA MER1_type -46 94 1 1276 183 127 4 chrX 4758105 4758373 -172215767 + AluJb SINE Alu 2 302 0 205 257 29 0 chrX 4758563 4758633 -172215507 + (CGCTG)n Simple_repeat Simple_repeat 5 76 0 695 232 54 6 chrX 4759009 4759177 -172214963 - MER5B DNA MER1_type -2 176 1 200 205 0 0 chrX 4759237 4759276 -172214864 + (ATG)n Simple_repeat Simple_repeat 3 41 0 841 188 0 8 chrX 4760705 4760838 -172213302 + FLAM_A SINE Alu 1 132 -1 566 256 106 19 chrX 4760883 4761124 -172213016 + MLT1J1 LTR MaLR 68 340 -106 362 65 0 0 chrX 4761730 4761776 -172212364 + MADE1 DNA Mariner 1 46 -34 256 207 184 23 chrX 4761780 4761867 -172212273 + MIR3 SINE MIR 103 203 -5 1268 187 47 0 chrX 4761943 4762157 -172211983 - MER58A DNA MER1_type 0 224 1 188 200 100 67 chrX 4762335 4762395 -172211745 + MER5A DNA MER1_type 121 182 -7 1816 220 73 109 chrX 4762510 4763168 -172210972 - HAL1 LINE L1 -743 1764 1089 308 153 17 17 chrX 4763168 4763227 -172210913 + MER116 DNA Mariner 9 67 -13 1816 220 73 109 chrX 4763227 4763452 -172210688 - HAL1 LINE L1 -1418 1089 857 325 266 169 16 chrX 4763469 4763593 -172210547 - MIR SINE MIR -2 260 118 494 164 118 9 chrX 4763593 4763703 -172210437 - HAL1 LINE L1 -1643 864 743 1337 186 9 32 chrX 4763712 4764009 -172210131 + MLT1D LTR MaLR 1 332 -173 7351 168 40 1 chrX 4764009 4765940 -172208200 - L1P2 LINE L1 -445 5709 3699 1831 154 7 20 chrX 4765943 4766248 -172207892 - AluJo SINE Alu -11 301 1 711 180 39 0 chrX 4766248 4766376 -172207764 + MLT1D LTR MaLR 373 505 0 1420 189 25 14 chrX 4766519 4766662 -172207478 + MSTD LTR MaLR 1 141 -255 2141 103 0 0 chrX 4766662 4766944 -172207196 + AluSx SINE Alu 1 282 -30 1420 189 25 14 chrX 4766944 4767086 -172207054 + MSTD LTR MaLR 141 289 -107 2022 166 5 87 chrX 4767131 4767547 -172206593 - MLT1B LTR MaLR 0 390 9 798 285 48 22 chrX 4767557 4767869 -172206271 - HAL1 LINE L1 -2187 320 1 2296 114 0 7 chrX 4768204 4768511 -172205629 - AluSx SINE Alu -7 305 1 1590 143 28 16 chrX 4768822 4769073 -172205067 - AluJo SINE Alu -14 298 45 1062 181 68 0 chrX 4769093 4769270 -172204870 + MER5A DNA MER1_type 1 189 0 262 274 48 0 chrX 4769292 4769354 -172204786 + L2 LINE L2 3234 3298 -15 729 259 151 49 chrX 4770298 4770807 -172203333 + MLT1F1 LTR MaLR 1 561 -6 243 0 0 0 chrX 4770873 4770900 -172203240 + (A)n Simple_repeat Simple_repeat 1 27 0 607 260 165 44 chrX 4771105 4771493 -172202647 + MLT1L LTR MaLR 2 436 -179 331 247 32 43 chrX 4771790 4771883 -172202257 + LTR16A1 LTR ERVL 188 279 -178 218 286 16 16 chrX 4771883 4771946 -172202194 - MIR SINE MIR -171 91 29 761 273 4 24 chrX 4772274 4772501 -172201639 + MIR SINE MIR 25 246 -16 360 337 23 55 chrX 4772519 4772952 -172201188 - HAL1 LINE L1 -877 1630 1212 2632 137 145 100 chrX 4773012 4773397 -172200743 - L1MB2 LINE L1 -107 6064 5637 2268 113 0 0 chrX 4773397 4773698 -172200442 - AluSq SINE Alu -12 301 1 2632 137 145 100 chrX 4773698 4773961 -172200179 - L1MB2 LINE L1 -534 5637 5387 2410 90 0 0 chrX 4774139 4774440 -172199700 + AluSg SINE Alu 1 301 -9 2373 76 0 3 chrX 4774950 4775241 -172198899 + AluSq SINE Alu 1 290 -23 1623 155 51 83 chrX 4775681 4776076 -172198064 + MLT2D LTR ERVL 4 480 -40 286 181 48 0 chrX 4776082 4776165 -172197975 + (TATG)n Simple_repeat Simple_repeat 1 87 0 326 134 0 5 chrX 4776165 4776179 -172197961 + MLT2B1 LTR ERVL 391 404 -116 186 43 0 0 chrX 4776179 4776202 -172197938 + (CA)n Simple_repeat Simple_repeat 2 24 0 326 134 0 5 chrX 4776202 4776243 -172197897 + MLT2B1 LTR ERVL 404 520 0 349 223 106 0 chrX 4776522 4776616 -172197524 - Charlie7 DNA MER1_type -2507 105 2 24 0 0 0 chrX 4776964 4776988 -172197152 + AT_rich Low_complexity Low_complexity 1 24 0 213 289 0 0 chrX 4777331 4777383 -172196757 + MER91B DNA MER1_type 79 130 -60 435 232 11 42 chrX 4777411 4777506 -172196634 + MER91B DNA MER1_type 98 189 -1 215 237 0 34 chrX 4777626 4777685 -172196455 - L2 LINE L2 0 3313 3257 302 271 161 9 chrX 4777929 4778072 -172196068 - MIR SINE MIR -65 143 28 21 0 0 0 chrX 4778561 4778582 -172195558 + AT_rich Low_complexity Low_complexity 1 21 0 605 262 101 28 chrX 4778632 4778918 -172195222 - L1MC4 LINE L1 0 8042 7736 627 302 86 7 chrX 4778941 4779219 -172194921 - MLT1H LTR MaLR 0 549 250 2590 194 18 22 chrX 4779683 4780193 -172193947 - LTR31 LTR ERV1 -8 611 104 1841 163 17 0 chrX 4780233 4780522 -172193618 - AluJo SINE Alu -18 294 1 208 331 110 55 chrX 4780840 4780967 -172193173 + MIR SINE MIR 59 192 -70 474 301 56 20 chrX 4781274 4781470 -172192670 - MIR SINE MIR 0 262 60 320 317 50 25 chrX 4781935 4782055 -172192085 - L2 LINE L2 -1 3271 3149 290 297 42 8 chrX 4782181 4782299 -172191841 - MIR SINE MIR -121 141 20 998 201 11 0 chrX 4782485 4782669 -172191471 + MER5A DNA MER1_type 4 189 0 532 302 39 28 chrX 4782785 4782900 -172191240 + MER5A DNA MER1_type 9 128 -61 5576 45 0 0 chrX 4782900 4783527 -172190613 - L1PA5 LINE L1 -2 6152 5526 532 302 39 28 chrX 4783527 4783590 -172190550 + MER5A DNA MER1_type 128 189 0 2099 130 0 3 chrX 4783664 4783971 -172190169 - AluSx SINE Alu -6 306 1 426 342 86 53 chrX 4784064 4784424 -172189716 - L2 LINE L2 -4 3268 2897 1309 119 5 21 chrX 4784598 4784792 -172189348 - MER4A LTR ERV1 0 664 474 234 184 0 0 chrX 4784855 4784893 -172189247 + L1MC/D LINE L1 5660 5697 -545 2815 145 86 43 chrX 4784905 4785485 -172188655 - L1MB7 LINE L1 0 6184 5580 2840 145 117 26 chrX 4785690 4786235 -172187905 - LTR49 LTR ERV1 0 595 1 976 181 0 125 chrX 4786683 4786808 -172187332 - MER20 DNA MER1_type -2 217 78 2113 102 6 35 chrX 4786808 4787121 -172187019 - AluSq SINE Alu -9 304 1 976 181 0 125 chrX 4787121 4787199 -172186941 - MER20 DNA MER1_type -141 78 48 3595 151 50 18 chrX 4787199 4787587 -172186553 + LTR26E LTR ERV1 1 416 -206 1624 104 0 0 chrX 4787587 4787798 -172186342 - AluSg/x SINE Alu -18 292 82 3595 151 50 18 chrX 4787798 4788012 -172186128 + LTR26E LTR ERV1 416 622 0 976 181 0 125 chrX 4788012 4788055 -172186085 - MER20 DNA MER1_type -171 48 1 419 320 16 0 chrX 4788580 4788702 -172185438 - MIR SINE MIR -137 125 2 447 314 24 39 chrX 4789092 4789323 -172184817 - L1ME3A LINE L1 -1 6161 5940 2395 82 3 7 chrX 4789420 4789724 -172184416 - AluSp SINE Alu -10 303 1 738 242 9 3 chrX 4789900 4790074 -172184066 + MLT1F LTR MaLR 1 183 -378 * 2831 250 55 81 chrX 4790073 4791203 -172182937 + MER69B DNA AcHobo 15 1112 -1414 1998 133 3 0 chrX 4791203 4791520 -172182620 + AluSq SINE Alu 1 318 0 2831 250 55 81 chrX 4791520 4791633 -172182507 + MER69B DNA AcHobo 1112 1226 0 272 287 122 9 chrX 4791917 4792032 -172182108 - L2 LINE L2 -458 2856 2729 848 126 21 28 chrX 4793248 4793391 -172180749 - FLAM_C SINE Alu -1 142 1 243 306 16 16 chrX 4793725 4793846 -172180294 + L1 LINE L1 4938 5058 -1088 2418 82 0 0 chrX 4793875 4794169 -172179971 - AluSc SINE Alu -15 294 1 2217 104 17 0 chrX 4794212 4794509 -172179631 + AluSx SINE Alu 1 302 -10 554 319 86 26 chrX 4794798 4795042 -172179098 + HAL1 LINE L1 1241 1524 -983 2269 90 16 10 chrX 4795042 4795352 -172178788 + AluSx SINE Alu 1 312 0 554 319 86 26 chrX 4795352 4795536 -172178604 + HAL1 LINE L1 1524 1695 -812 310 272 62 68 chrX 4795575 4795737 -172178403 + HAL1 LINE L1 1797 1957 -550 640 242 91 80 chrX 4795754 4796018 -172178122 + MLT1H1 LTR MaLR 1 267 -288 2547 64 0 6 chrX 4796045 4796356 -172177784 - AluSp SINE Alu -4 309 1 1528 40 0 0 chrX 4796500 4796673 -172177467 + AluY SINE Alu 131 303 -8 2189 97 7 7 chrX 4796683 4796982 -172177158 + AluSx SINE Alu 1 299 -13 1201 168 22 0 chrX 4797523 4797708 -172176432 - MER5A DNA MER1_type 0 189 1 236 257 95 63 chrX 4798161 4798414 -172175726 + HAL1 LINE L1 2222 2482 -25 531 283 63 19 chrX 4798485 4798690 -172175450 + MIR SINE MIR 49 262 0 5869 83 39 10 chrX 4798956 4799747 -172174393 - L1MA2 LINE L1 0 6304 5491 2340 198 105 70 chrX 4800452 4801082 -172173058 + MLT1E1 LTR MaLR 3 654 0 977 232 14 5 chrX 4801984 4802191 -172171949 - MER3 DNA MER1_type 0 209 1 5326 174 52 14 chrX 4802205 4803244 -172170896 + Tigger6a DNA MER2_type 6 1083 0 306 279 19 39 chrX 4803324 4803428 -172170712 + L2 LINE L2 3171 3272 0 240 111 0 0 chrX 4804258 4804294 -172169846 + (CA)n Simple_repeat Simple_repeat 1 36 0 205 200 0 0 chrX 4804375 4804415 -172169725 + T-rich Low_complexity Low_complexity 1 40 0 360 155 18 31 chrX 4804424 4804498 -172169642 - AluSg/x SINE Alu -120 180 120 263 254 48 24 chrX 4805124 4805250 -172168890 + L1ME4a LINE L1 5940 6068 -53 624 236 130 20 chrX 4805255 4805547 -172168593 + L1MC5 LINE L1 7631 7954 -7 216 97 0 0 chrX 4805684 4805715 -172168425 + (TTTA)n Simple_repeat Simple_repeat 1 31 0 263 113 97 16 chrX 4805715 4805777 -172168363 - Charlie7 DNA MER1_type -86 2526 2460 629 279 43 31 chrX 4806192 4806450 -172167690 - MIR SINE MIR 0 262 2 306 324 19 0 chrX 4806461 4806566 -172167574 + MIR SINE MIR 151 257 -5 31 76 0 0 chrX 4806644 4806710 -172167430 + AT_rich Low_complexity Low_complexity 1 66 0 1875 147 3 21 chrX 4810089 4810374 -172163766 - AluSx SINE Alu -32 280 1 1882 168 0 22 chrX 4810984 4811299 -172162841 - AluJo SINE Alu -3 309 2 1736 153 22 32 chrX 4812018 4812331 -172161809 - AluJo SINE Alu -2 310 1 330 257 86 9 chrX 4812770 4812875 -172161265 + MIR SINE MIR 88 200 -62 2002 118 0 0 chrX 4812924 4813195 -172160945 + AluSx SINE Alu 1 271 -41 1686 167 3 40 chrX 4813619 4813942 -172160198 - AluJb SINE Alu -1 311 1 180 0 0 0 chrX 4814050 4814070 -172160070 + (TAA)n Simple_repeat Simple_repeat 1 20 0 517 335 57 1 chrX 4814079 4814299 -172159841 - MIR SINE MIR -17 245 15 198 302 79 0 chrX 4814332 4814395 -172159745 - MIR3 SINE MIR -14 194 127 3018 125 7 2 chrX 4814497 4814928 -172159212 - MER57B LTR ERV1 0 434 2 201 277 44 66 chrX 4815770 4815907 -172158233 - L2 LINE L2 -10 3303 3170 2461 83 0 0 chrX 4816091 4816393 -172157747 - AluSg SINE Alu -8 302 1 25 0 0 0 chrX 4816438 4816463 -172157677 + AT_rich Low_complexity Low_complexity 1 25 0 773 279 28 5 chrX 4816761 4816976 -172157164 - MIR SINE MIR -3 259 40 1611 208 13 92 chrX 4818312 4818379 -172155761 - MLT1D LTR MaLR 0 505 434 1423 120 10 0 chrX 4818379 4818587 -172155553 - L1PA15 LINE L1 -6 6159 5950 2300 105 3 0 chrX 4818595 4818899 -172155241 - AluSp SINE Alu -8 305 1 1611 208 13 92 chrX 4818899 4819298 -172154842 - MLT1D LTR MaLR -78 427 68 270 325 78 36 chrX 4819479 4819645 -172154495 - MIR SINE MIR 0 262 90 192 77 0 0 chrX 4819645 4819671 -172154469 + (TTA)n Simple_repeat Simple_repeat 2 27 0 890 146 0 0 chrX 4819671 4819794 -172154346 - FLAM_C SINE Alu -20 123 1 204 274 69 39 chrX 4821018 4821120 -172153020 + L2 LINE L2 3162 3266 -6 1308 202 27 0 chrX 4821166 4821424 -172152716 + L1MD3 LINE L1 7729 7993 -2 2383 70 3 3 chrX 4821642 4821943 -172152197 + AluY SINE Alu 1 301 -10 441 268 225 0 chrX 4823728 4823870 -172150270 + MER5A DNA MER1_type 9 182 -7 353 246 49 28 chrX 4824151 4824293 -172149847 + MIR3 SINE MIR 15 159 -49 228 250 114 71 chrX 4824321 4824461 -172149679 + L2 LINE L2 3066 3211 -102 432 83 24 36 chrX 4825494 4825578 -172148562 + (TTTC)n Simple_repeat Simple_repeat 2 84 0 341 85 0 0 chrX 4825978 4826025 -172148115 + MADE1 DNA Mariner 34 80 0 311 212 76 0 chrX 4826029 4826095 -172148045 - MIR SINE MIR -64 144 74 2538 75 0 0 chrX 4827044 4827349 -172146791 + AluSg SINE Alu 1 305 -5 2408 87 0 3 chrX 4827366 4827665 -172146475 + AluSg SINE Alu 1 298 -12 2188 130 0 0 chrX 4827991 4828292 -172145848 + AluSx SINE Alu 1 301 -11 22 35 0 0 chrX 4828720 4828749 -172145391 + AT_rich Low_complexity Low_complexity 1 29 0 3868 96 46 4 chrX 4829070 4829632 -172144508 - Tigger3(Golem) DNA MER2_type -1 3028 2443 277 248 167 0 chrX 4830379 4830501 -172143639 - MIR SINE MIR -62 146 16 236 54 54 0 chrX 4830609 4830646 -172143494 + (TGGA)n Simple_repeat Simple_repeat 4 42 0 471 301 91 32 chrX 4830716 4831121 -172143019 - L1ME4a LINE L1 -3 6118 5690 1817 122 20 0 chrX 4832007 4832293 -172141847 - AluJo SINE Alu 0 316 26 2501 37 41 0 chrX 4832335 4832630 -172141510 - AluY SINE Alu -3 308 2 1910 120 174 23 chrX 4833114 4833465 -172140675 - MER4A LTR ERV1 0 664 261 608 124 21 10 chrX 4833465 4833562 -172140578 - MER4A LTR ERV1 -566 98 1 210 351 0 43 chrX 4834134 4834228 -172139912 - MER5A DNA MER1_type -22 167 78 765 179 19 26 chrX 4834282 4834438 -172139702 + MER5A DNA MER1_type 31 185 -4 801 201 29 6 chrX 4834465 4834639 -172139501 + MER5B DNA MER1_type 1 178 0 1233 184 121 18 chrX 4834677 4834949 -172139191 + AluJo SINE Alu 1 300 -12 506 210 0 0 chrX 4835071 4835171 -172138969 - MER5A DNA MER1_type -81 108 9 285 317 33 39 chrX 4835222 4835402 -172138738 + L2 LINE L2 2235 2413 -901 368 274 9 9 chrX 4835570 4835683 -172138457 + L2 LINE L2 3199 3311 -2 408 40 0 0 chrX 4835692 4835742 -172138398 + (TGGA)n Simple_repeat Simple_repeat 1 50 0 2037 123 38 3 chrX 4835870 4836162 -172137978 - AluSx SINE Alu -10 302 1 194 188 0 0 chrX 4836184 4836216 -172137924 + L2 LINE L2 3201 3232 -81 180 0 0 0 chrX 4836911 4836931 -172137209 + (CA)n Simple_repeat Simple_repeat 1 20 0 207 307 0 27 chrX 4836933 4837008 -172137132 + (CATATA)n Simple_repeat Simple_repeat 2 74 0 366 107 0 0 chrX 4837010 4837066 -172137074 + (TA)n Simple_repeat Simple_repeat 2 57 0 2367 100 3 0 chrX 4837965 4838266 -172135874 + AluSx SINE Alu 1 302 -10 28 86 0 0 chrX 4838295 4838365 -172135775 + AT_rich Low_complexity Low_complexity 1 70 0 230 220 0 34 chrX 4838491 4838550 -172135590 + L1MC4 LINE L1 6647 6703 -1339 200 200 27 136 chrX 4839813 4839923 -172134217 + MIR SINE MIR 91 188 -74 1742 97 4 0 chrX 4841564 4841792 -172132348 - AluSg/x SINE Alu -1 309 81 2409 84 7 0 chrX 4844167 4844475 -172129665 - AluSg SINE Alu 0 310 1 292 244 52 0 chrX 4848545 4848630 -172125510 - MIR SINE MIR -51 157 68 444 254 59 0 chrX 4848841 4848959 -172125181 + MER94 DNA DNA 2 126 -8 1809 151 10 10 chrX 4849315 4849613 -172124527 + AluJo SINE Alu 3 300 -12 460 153 0 0 chrX 4849982 4850054 -172124086 - AluJ/FLAM SINE Alu -236 76 5 524 134 116 71 chrX 4850907 4851019 -172123121 + MER63 DNA MER1_type 1 743 -93 599 325 74 9 chrX 4851167 4851656 -172122484 + L2 LINE L2 2544 3068 -245 378 247 22 0 chrX 4851690 4851779 -172122361 - MIR SINE MIR 0 262 172 1001 199 44 22 chrX 4851788 4852014 -172122126 - MER46C DNA MER2_type 0 338 108 49 107 0 0 chrX 4852014 4852210 -172121930 + AT_rich Low_complexity Low_complexity 1 196 0 227 193 101 118 chrX 4852210 4852329 -172121811 - MER46C DNA MER2_type -203 135 19 2220 109 0 0 chrX 4852330 4852657 -172121483 - AluSq SINE Alu 0 327 1 357 61 0 0 chrX 4852664 4852713 -172121427 - MIR SINE MIR -107 155 107 319 256 136 42 chrX 4852733 4852924 -172121216 + L2 LINE L2 3105 3313 0 212 229 0 33 chrX 4853457 4853518 -172120622 - L2 LINE L2 -77 3195 3137 1019 256 40 49 chrX 4853710 4854057 -172120083 + MLT1J LTR MaLR 6 349 -162 821 196 101 6 chrX 4854931 4855099 -172119041 - MER3 DNA MER1_type -25 184 1 502 176 133 66 chrX 4855113 4855323 -172118817 - MER58 DNA MER1_type -5 2415 1 343 202 0 140 chrX 4856212 4856326 -172117814 - MER58 DNA MER1_type -243 98 1 217 212 136 68 chrX 4856982 4857114 -172117026 - MIR SINE MIR -14 248 108 2199 120 3 0 chrX 4857345 4857646 -172116494 + AluSx SINE Alu 1 302 -10 2883 85 0 3 chrX 4857741 4858106 -172116034 - THE1B LTR MaLR 0 364 1 352 237 52 21 chrX 4858194 4858291 -172115849 - L2 LINE L2 -3 3269 3170 200 337 11 11 chrX 4858953 4859042 -172115098 + MIR3 SINE MIR 114 202 -6 2133 109 0 0 chrX 4859261 4859566 -172114574 - AluSx SINE Alu 0 305 1 1213 301 53 15 chrX 4860110 4860864 -172113276 - L2 LINE L2 -8 3305 2525 208 221 128 12 chrX 4860897 4860983 -172113157 - L2 LINE L2 -1482 1832 1737 246 156 0 0 chrX 4861028 4861073 -172113067 + CT-rich Low_complexity Low_complexity 1 45 0 727 218 184 49 chrX 4861076 4861424 -172112716 + MLT1G LTR MaLR 196 590 0 1063 203 98 67 chrX 4862692 4863008 -172111132 - MER58B DNA MER1_type -13 328 3 241 313 20 0 chrX 4863358 4863457 -172110683 + MIR SINE MIR 49 149 -113 557 243 43 102 chrX 4863599 4863845 -172110295 - L1ME4a LINE L1 -225 5896 5670 3040 67 15 0 chrX 4863845 4864247 -172109893 - L1PA10 LINE L1 -1 6167 5760 557 243 43 102 chrX 4864247 4864305 -172109835 - L1ME4a LINE L1 -451 5670 5610 221 350 0 44 chrX 4864985 4865122 -172109018 - MIR SINE MIR -71 191 61 1904 153 80 49 chrX 4865125 4865577 -172108563 + MER31B LTR ERV1 1 466 0 24 32 0 0 chrX 4866344 4866375 -172107765 + AT_rich Low_complexity Low_complexity 1 31 0 1111 178 84 0 chrX 4866757 4866959 -172107181 - MER20 DNA MER1_type 0 219 1 444 306 33 0 chrX 4867337 4867520 -172106620 - MIR SINE MIR 0 262 74 818 241 105 8 chrX 4867767 4868198 -172105942 + LTR33 LTR ERVL 14 512 -9 404 289 19 13 chrX 4868208 4868364 -172105776 + L1M4 LINE L1 4490 4646 -1500 434 188 20 30 chrX 4868417 4868518 -172105622 + MER20B DNA MER1_type 682 781 -2 2200 116 0 3 chrX 4868767 4869070 -172105070 - AluSg SINE Alu -8 302 1 41321 73 3 2 chrX 4869161 4875297 -172098843 + L1PA7 LINE L1 3 6139 -15 1978 137 10 10 chrX 4875430 4875729 -172098411 + AluSq SINE Alu 1 299 -14 830 96 7 66 chrX 4925993 4926129 -172048011 + FLAM_C SINE Alu 2 129 -4 419 250 230 7 chrX 4926998 4927146 -172046994 + MER5A DNA MER1_type 9 189 0 343 209 18 0 chrX 4927672 4927782 -172046358 + (TCCA)n Simple_repeat Simple_repeat 2 113 0 192 363 73 51 chrX 4927876 4928231 -172045909 + L2 LINE L2 2427 2789 -525 843 157 5 65 chrX 4928380 4928565 -172045575 - Tigger2a DNA MER2_type -260 174 1 974 202 67 14 chrX 4928578 4928786 -172045354 + MER58A DNA MER1_type 3 221 -3 319 209 22 11 chrX 4928790 4928881 -172045259 - HAL1 LINE L1 -171 2336 2245 3363 140 132 6 chrX 4928913 4929541 -172044599 + MER39 LTR ERV1 1 707 0 21 36 0 0 chrX 4930115 4930143 -172043997 + AT_rich Low_complexity Low_complexity 1 28 0 45 34 0 0 chrX 4930850 4930909 -172043231 + AT_rich Low_complexity Low_complexity 1 59 0 2243 121 0 0 chrX 4930937 4931243 -172042897 - AluSx SINE Alu -6 306 1 591 299 105 41 chrX 4931715 4931781 -172042359 + L1ME LINE L1 4862 4922 -1242 2339 67 0 0 chrX 4931781 4932093 -172042047 + AluY SINE Alu 1 312 0 591 299 105 41 chrX 4932093 4932597 -172041543 + L1ME LINE L1 4922 5465 -699 484 261 67 28 chrX 4932766 4933049 -172041091 + HAL1 LINE L1 1032 1325 -1182 195 320 154 0 chrX 4933520 4933598 -172040542 + L2 LINE L2 3147 3236 -36 2016 117 3 10 chrX 4935820 4936111 -172038029 + AluSx SINE Alu 14 302 -10 3043 150 54 9 chrX 4936213 4936422 -172037718 + L1MB5 LINE L1 5577 5775 -399 270 0 0 0 chrX 4936422 4936452 -172037688 + (CA)n Simple_repeat Simple_repeat 2 31 0 3043 150 54 9 chrX 4936452 4936814 -172037326 + L1MB5 LINE L1 5775 6174 0 2367 90 0 0 chrX 4936823 4937122 -172037018 + AluSg SINE Alu 1 299 -11 620 167 121 23 chrX 4938227 4938401 -172035739 - MER33 DNA MER1_type -132 192 2 2291 92 3 0 chrX 4938579 4938871 -172035269 + AluSg SINE Alu 1 293 -17 1605 124 18 0 chrX 4938881 4939107 -172035033 + AluSq SINE Alu 1 230 -83 28 0 0 0 chrX 4939246 4939274 -172034866 + AT_rich Low_complexity Low_complexity 1 28 0 465 228 101 36 chrX 4939536 4939755 -172034385 - L1MC4 LINE L1 -634 7408 7176 943 181 0 0 chrX 4941745 4941889 -172032251 - FAM SINE Alu -22 163 20 222 359 70 0 chrX 4942618 4942746 -172031394 + MIR SINE MIR 58 194 -68 3060 111 99 32 chrX 4943097 4943557 -172030583 + LTR49 LTR ERV1 2 507 -88 1404 161 165 0 chrX 4943557 4943812 -172030328 + AluJb SINE Alu 1 297 -5 3060 111 99 32 chrX 4943812 4943908 -172030232 + LTR49 LTR ERV1 507 595 0 2480 199 102 7 chrX 4943964 4944561 -172029579 - MLT1E1 LTR MaLR 0 654 1 1004 171 40 11 chrX 4944588 4944763 -172029377 + FAM SINE Alu 1 44 -5 206 238 0 0 chrX 4945791 4945833 -172028307 + A-rich Low_complexity Low_complexity 4 45 0 479 253 79 75 chrX 4945957 4945999 -172028141 + MER112 DNA MER1_type 7 47 -213 1853 165 0 10 chrX 4945999 4946296 -172027844 + AluJb SINE Alu 1 294 -18 479 253 79 75 chrX 4946296 4946506 -172027634 + MER112 DNA MER1_type 47 260 0 297 0 0 0 chrX 4949540 4949573 -172024567 + (TA)n Simple_repeat Simple_repeat 1 33 0 314 258 32 16 chrX 4949651 4949775 -172024365 + L1MC4a LINE L1 5788 5913 -1895 358 128 0 26 chrX 4949775 4949853 -172024287 + (TTTC)n Simple_repeat Simple_repeat 1 76 0 1882 135 0 11 chrX 4949853 4950134 -172024006 - AluJb SINE Alu -34 278 1 916 216 59 24 chrX 4950671 4950926 -172023214 + L1MC4a LINE L1 6555 6818 -990 2485 213 89 33 chrX 4950943 4951846 -172022294 + L1MC5 LINE L1 6961 7913 -48 381 272 14 14 chrX 4952027 4952174 -172021966 + (TA)n Simple_repeat Simple_repeat 1 147 0 211 214 71 0 chrX 4952679 4952721 -172021419 + MIR SINE MIR 79 123 -139 502 258 52 31 chrX 4953617 4953811 -172020329 - MER58 DNA MER1_type -130 211 14 559 228 24 0 chrX 4953815 4953938 -172020202 + MIR SINE MIR 21 146 -116 22 35 0 0 chrX 4953997 4954026 -172020114 + AT_rich Low_complexity Low_complexity 1 29 0 910 150 56 19 chrX 4954112 4954272 -172019868 - FRAM SINE Alu 0 166 1 2095 127 10 3 chrX 4955000 4955300 -172018840 + AluSx SINE Alu 1 302 -10 1364 109 95 5 chrX 4956111 4956321 -172017819 + MER30 DNA MER1_type 1 229 -1 3978 28 4 0 chrX 4957235 4957707 -172016433 - L1PA5 LINE L1 -6 6148 5675 1420 236 74 7 chrX 4957856 4958342 -172015798 - L2 LINE L2 -3 3310 2789 350 205 128 0 chrX 4958516 4958633 -172015507 - L1ME LINE L1 -5182 888 757 2096 243 53 21 chrX 4958647 4958939 -172015201 - L1ME LINE L1 -5371 699 418 3820 152 52 12 chrX 4958939 4959617 -172014523 + MER44D DNA MER2_type 1 705 0 2096 243 53 21 chrX 4959617 4959998 -172014142 - L1ME LINE L1 -5652 418 4 277 234 11 53 chrX 4961100 4961148 -172012992 + (CATATA)n Simple_repeat Simple_repeat 6 50 -45 441 251 75 48 chrX 4961148 4961375 -172012765 + MER106A DNA MER1_type 1 233 -3 277 234 11 53 chrX 4961375 4961420 -172012720 + (CATATA)n Simple_repeat Simple_repeat 50 95 0 865 223 132 70 chrX 4962092 4962639 -172011501 + MER34C LTR ERV1 4 584 -1 552 202 16 16 chrX 4962639 4962760 -172011380 + MER20 DNA MER1_type 99 219 0 25 31 0 0 chrX 4962761 4962793 -172011347 + AT_rich Low_complexity Low_complexity 1 32 0 1678 205 38 48 chrX 4964220 4964254 -172009886 - Charlie4a DNA MER1_type -1453 508 475 1820 110 64 135 chrX 4964254 4964646 -172009494 - THE1B LTR MaLR 0 364 1 12118 81 4 1 chrX 4964646 4966221 -172007919 - THE1B-int LTR MaLR 0 1580 1 2101 137 80 0 chrX 4966221 4966558 -172007582 - THE1B LTR MaLR 0 364 1 1678 205 38 48 chrX 4966558 4966705 -172007435 - Charlie4a DNA MER1_type -1484 477 330 1010 233 9 5 chrX 4966705 4966920 -172007220 - MER20 DNA MER1_type -3 216 1 1678 205 38 48 chrX 4966920 4967232 -172006908 - Charlie4a DNA MER1_type -1631 330 17 383 336 8 8 chrX 4967327 4967452 -172006688 - MIR3 SINE MIR -31 177 53 1252 183 24 45 chrX 4968264 4968553 -172005587 + MLT1A1 LTR MaLR 3 285 -80 1757 244 96 43 chrX 4968834 4969388 -172004752 + MLT1E LTR MaLR 7 589 -4 2322 100 3 6 chrX 4969732 4970043 -172004097 + AluSg SINE Alu 1 310 0 234 260 0 0 chrX 4970195 4970245 -172003895 + L2 LINE L2 3264 3313 0 516 225 9 18 chrX 4971181 4971292 -172002848 + MER5B DNA MER1_type 34 143 -35 317 220 49 4 chrX 4971313 4971443 -172002697 - MER5A DNA MER1_type 0 189 11 399 276 15 52 chrX 4971506 4971640 -172002500 - MER90 LTR ERV1 0 614 486 679 134 0 18 chrX 4971642 4971754 -172002386 + 7SK RNA RNA 1 110 -83 1224 166 5 10 chrX 4971759 4971830 -172002310 - AluJo SINE Alu -108 204 134 2381 60 0 0 chrX 4971830 4972143 -172001997 - AluY SINE Alu 0 313 1 1224 166 5 10 chrX 4972143 4972275 -172001865 - AluJo SINE Alu -178 134 1 204 308 0 0 chrX 4972312 4972364 -172001776 - MIR SINE MIR -6 256 205 281 245 41 10 chrX 4973729 4973827 -172000313 + (TATATG)n Simple_repeat Simple_repeat 5 105 0 578 282 99 63 chrX 4974268 4974520 -171999620 - MIR SINE MIR 0 262 2 24 0 0 0 chrX 4974634 4974658 -171999482 + AT_rich Low_complexity Low_complexity 1 24 0 2128 121 3 3 chrX 4975076 4975373 -171998767 - AluSx SINE Alu -15 297 1 1044 269 35 57 chrX 4976468 4976707 -171997433 + L2 LINE L2 2921 3149 -164 2832 131 14 36 chrX 4976707 4977149 -171996991 + Tigger2a DNA MER2_type 1 432 -2 1044 269 35 57 chrX 4977149 4977311 -171996829 + L2 LINE L2 3149 3313 0 180 317 58 39 chrX 4977707 4977811 -171996329 - MIR SINE MIR -66 142 37 239 285 126 53 chrX 4978260 4978411 -171995729 - MIR SINE MIR -18 244 83 464 190 93 0 chrX 4978467 4978576 -171995564 - MER45A DNA AcHobo -2 176 58 282 206 0 0 chrX 4979223 4979286 -171994854 + GA-rich Low_complexity Low_complexity 2 64 0 888 207 23 6 chrX 4979505 4979679 -171994461 + MER5B DNA MER1_type 1 177 -1 266 313 0 50 chrX 4979894 4979993 -171994147 - MIR SINE MIR -2 260 167 449 278 233 29 chrX 4980269 4980643 -171993497 - L2 LINE L2 -339 2975 2526 1886 211 68 35 chrX 4980873 4981571 -171992569 + Charlie7 DNA MER1_type 1852 2597 -15 443 274 11 54 chrX 4982767 4982953 -171991187 + LTR33 LTR ERVL 37 214 -307 302 299 19 0 chrX 4982936 4983043 -171991097 + LTR33 LTR ERVL 327 435 -86 * 864 278 27 5 chrX 4983994 4984217 -171989923 + MIR SINE MIR 29 256 -6 2103 60 0 0 chrX 4984220 4984471 -171989669 + L1PA13 LINE L1 5911 6161 -2 346 318 84 38 chrX 4988126 4988365 -171985775 + L1ME LINE L1 4562 4811 -1335 229 264 28 0 chrX 4988463 4988535 -171985605 + Charlie7 DNA MER1_type 1519 1592 -1020 225 194 0 0 chrX 4989486 4989522 -171984618 + L1ME LINE L1 5552 5587 -577 1801 208 25 11 chrX 4990057 4990423 -171983717 + MLT1A2 LTR MaLR 1 371 -3 284 265 143 10 chrX 4991171 4991269 -171982871 - L2 LINE L2 -12 3260 3150 2261 188 81 43 chrX 4992267 4992750 -171981390 - MLT1D LTR MaLR 0 505 5 1930 151 3 35 chrX 4993478 4993796 -171980344 + AluJb SINE Alu 1 308 -4 2048 169 77 12 chrX 4993896 4993986 -171980154 - Charlie1b DNA MER1_type -2320 441 358 2194 122 10 0 chrX 4993986 4994290 -171979850 + AluSx SINE Alu 1 307 -5 2048 169 77 12 chrX 4994290 4994613 -171979527 - Charlie1b DNA MER1_type -2403 358 1 1331 220 11 8 chrX 4995344 4995608 -171978532 + Tigger7 DNA MER2_type 3 267 -466 554 150 20 30 chrX 4995606 4995706 -171978434 + Tigger7 DNA MER2_type 2389 2487 0 * 1867 143 29 0 chrX 4995760 4996068 -171978072 + AluSg SINE Alu 1 316 0 204 233 12 58 chrX 4996856 4996942 -171977198 - MIR SINE MIR -92 170 89 3187 169 19 12 chrX 4999531 5000117 -171974023 - L1MD3 LINE L1 -2 7993 7404 319 253 35 11 chrX 5000117 5000204 -171973936 - MLT1F1 LTR MaLR -442 125 37 677 109 44 36 chrX 5000205 5000342 -171973798 - L1MC3 LINE L1 -687 7098 6961 1171 83 0 6 chrX 5000348 5000505 -171973635 - AluSg/x SINE Alu -20 290 135 1011 179 97 0 chrX 5000513 5000588 -171973552 - L1MD3 LINE L1 -1022 6973 6907 198 0 0 0 chrX 5000588 5000610 -171973530 + (TC)n Simple_repeat Simple_repeat 1 22 0 1011 179 97 0 chrX 5000610 5000729 -171973411 - L1MD3 LINE L1 -1088 6907 6760 1878 188 19 40 chrX 5001159 5001531 -171972609 + MLT1A1 LTR MaLR 2 365 0 479 177 133 26 chrX 5002129 5002162 -171971978 + LTR40b LTR ERVL 331 359 -103 321 26 0 0 chrX 5002162 5002200 -171971940 + (TG)n Simple_repeat Simple_repeat 2 39 0 479 177 133 26 chrX 5002200 5002279 -171971861 + LTR40b LTR ERVL 359 455 -7 41762 57 15 2 chrX 5002424 5006157 -171967983 - L1P2 LINE L1 -584 5571 1741 2499 64 0 0 chrX 5006157 5006452 -171967688 + AluSp SINE Alu 1 295 -18 41762 57 15 2 chrX 5006452 5008206 -171965934 - L1P2 LINE L1 -4414 1741 11 1715 146 8 0 chrX 5008379 5008647 -171965493 + AluJb SINE Alu 40 309 -3 21 0 0 0 chrX 5008994 5009015 -171965125 + AT_rich Low_complexity Low_complexity 1 21 0 329 299 74 7 chrX 5009256 5009399 -171964741 - MIR SINE MIR -62 146 35 226 294 20 10 chrX 5009425 5009527 -171964613 + (TATATG)n Simple_repeat Simple_repeat 2 104 0 304 252 30 96 chrX 5009773 5009908 -171964232 + MIR3 SINE MIR 35 160 -48 2263 97 3 13 chrX 5009919 5010228 -171963912 + AluSp SINE Alu 1 306 -7 252 0 0 0 chrX 5010362 5010390 -171963750 + (ATTG)n Simple_repeat Simple_repeat 2 29 0 513 233 16 31 chrX 5010815 5010944 -171963196 - MIR SINE MIR -82 180 54 906 257 114 32 chrX 5010975 5011343 -171962797 + MLT1H LTR MaLR 22 393 -57 1506 190 7 20 chrX 5011343 5011643 -171962497 + L1MB4 LINE L1 5885 6180 0 906 257 114 32 chrX 5011643 5011707 -171962433 + MLT1H LTR MaLR 393 450 0 23 33 0 0 chrX 5012296 5012326 -171961814 + AT_rich Low_complexity Low_complexity 1 30 0 207 69 0 0 chrX 5012483 5012512 -171961628 + (TAA)n Simple_repeat Simple_repeat 2 30 0 457 276 8 8 chrX 5013517 5013640 -171960500 - L2 LINE L2 -4 3309 3187 279 308 44 25 chrX 5014233 5014392 -171959748 - MIR SINE MIR -4 258 97 371 242 60 54 chrX 5015046 5015195 -171958945 - MIR SINE MIR -85 177 28 379 293 32 8 chrX 5015315 5015438 -171958702 - MIR SINE MIR -45 217 92 229 388 97 22 chrX 5015840 5016296 -171957844 - L2 LINE L2 -2440 874 385 1574 270 24 0 chrX 5016436 5016817 -171957323 + LTR16C LTR ERVL 100 489 -2 2461 91 3 0 chrX 5018337 5018644 -171955496 + AluSp SINE Alu 1 308 -5 1367 167 0 9 chrX 5019705 5019926 -171954214 + AluJo SINE Alu 85 303 -9 773 306 65 45 chrX 5020248 5020571 -171953569 + L2 LINE L2 2380 2714 -600 1851 122 61 7 chrX 5020571 5020850 -171953290 + AluSx SINE Alu 2 295 -17 773 306 65 45 chrX 5020850 5020925 -171953215 + L2 LINE L2 2714 2786 -528 993 226 72 0 chrX 5020939 5021061 -171953079 - MER58A DNA MER1_type -2196 224 79 1698 206 0 3 chrX 5021061 5021371 -171952769 - AluJb SINE Alu -1 311 3 993 226 72 0 chrX 5021371 5021456 -171952684 - MER58A DNA MER1_type -2341 79 2 520 313 25 95 chrX 5021584 5021910 -171952230 + L2 LINE L2 2966 3268 -4 334 301 88 9 chrX 5021922 5022035 -171952105 + MIR SINE MIR 108 229 -33 543 296 62 16 chrX 5022639 5022896 -171951244 + LTR16C LTR ERVL 223 491 0 803 168 0 8 chrX 5022973 5023092 -171951048 - FLAM_A SINE Alu -15 118 1 24 0 0 0 chrX 5023583 5023607 -171950533 + AT_rich Low_complexity Low_complexity 1 24 0 2277 105 7 0 chrX 5023670 5023976 -171950164 - AluSx SINE Alu -4 308 1 312 260 14 0 chrX 5024122 5024195 -171949945 + MIR SINE MIR 48 121 -141 1590 161 95 3 chrX 5025457 5025742 -171948398 + AluJo SINE Alu 1 311 -1 311 289 22 0 chrX 5025817 5025907 -171948233 + L1MC5 LINE L1 5845 5936 -1872 1609 152 7 45 chrX 5026289 5026558 -171947582 - AluJo SINE Alu -53 259 1 2362 222 97 60 chrX 5026561 5027713 -171946427 + L1MC5 LINE L1 6294 7513 -448 194 301 54 21 chrX 5028080 5028173 -171945967 + MIR SINE MIR 8 103 -159 296 258 62 10 chrX 5028873 5028970 -171945170 + MER20B DNA MER1_type 76 177 -606 702 166 66 91 chrX 5029768 5030009 -171944131 + L1MC5 LINE L1 7653 7887 -74 1205 316 33 24 chrX 5030085 5030664 -171943476 + MLT1K LTR MaLR 2 585 -3 2532 81 0 0 chrX 5030723 5031032 -171943108 + AluSx SINE Alu 1 309 -3 1244 88 0 33 chrX 5031956 5032138 -171942002 + L1PA7 LINE L1 5965 6140 -14 562 306 117 37 chrX 5032315 5032724 -171941416 + MLT1J2 LTR MaLR 1 442 -8 1049 202 17 56 chrX 5033108 5033341 -171940799 + MER58A DNA MER1_type 1 224 0 327 294 39 0 chrX 5033750 5033895 -171940245 - MIR SINE MIR -50 212 62 578 312 60 14 chrX 5033914 5034132 -171940008 - MIR SINE MIR 0 262 35 2179 144 42 31 chrX 5034376 5034736 -171939404 + THE1B LTR MaLR 1 364 0 2292 96 14 0 chrX 5036260 5036553 -171937587 - AluSx SINE Alu -15 297 1 843 264 0 46 chrX 5037034 5037207 -171936933 - L1M3a LINE L1 -4737 2828 2671 2051 125 14 10 chrX 5037207 5037503 -171936637 - AluJo SINE Alu -15 297 1 843 264 0 46 chrX 5037503 5037613 -171936527 - L1M3a LINE L1 -4894 2671 2558 * 6030 151 13 10 chrX 5037608 5038705 -171935435 - L1MA4 LINE L1 -4 6296 5197 1211 162 8 32 chrX 5038813 5039066 -171935074 - L1 LINE L1 -773 5577 5331 381 176 0 47 chrX 5039048 5039133 -171935007 - L1M1 LINE L1 -4564 1749 1669 * 2728 214 48 94 chrX 5039175 5039809 -171934331 - L1M1 LINE L1 -4026 2356 1695 797 192 0 0 chrX 5039809 5039934 -171934206 - FLAM_A SINE Alu -8 125 1 2728 214 48 94 chrX 5039934 5040562 -171933578 - L1M1 LINE L1 -4687 1695 1040 1048 106 12 6 chrX 5040562 5040732 -171933408 + (TTTC)n Simple_repeat Simple_repeat 1 171 0 2728 214 48 94 chrX 5040732 5040806 -171933334 - L1M1 LINE L1 -5342 1040 964 1731 182 30 3 chrX 5040806 5041108 -171933032 - AluJb SINE Alu -2 310 1 2728 214 48 94 chrX 5041108 5041388 -171932752 - L1M1 LINE L1 -5418 964 1152 1921 156 0 28 chrX 5041388 5041709 -171932431 - AluSx SINE Alu 0 312 1 2728 214 48 94 chrX 5041709 5041829 -171932311 - L1M1 LINE L1 -5229 1153 1029 1043 300 117 18 chrX 5041873 5042608 -171931532 - L1M1 LINE L1 -5141 1162 530 2154 261 104 15 chrX 5042611 5043293 -171930847 - L1M3a LINE L1 -5212 2274 1532 199 330 130 20 chrX 5044251 5044351 -171929789 + L2 LINE L2 3162 3272 0 1120 213 88 37 chrX 5045221 5045494 -171928646 - MER58B DNA MER1_type -53 288 2 2007 175 39 11 chrX 5046189 5046544 -171927596 - MLT1A1 LTR MaLR 0 365 1 2093 174 69 16 chrX 5048365 5048797 -171925343 + L1M4 LINE L1 5255 5709 -475 914 97 48 23 chrX 5048804 5048995 -171925145 - MER4D LTR ERV1 -507 365 62 * 970 107 47 0 chrX 5048981 5049130 -171925010 - MER49 LTR ERV1 -629 294 139 1666 114 0 25 chrX 5049317 5049553 -171924587 + MER30 DNA MER1_type 1 230 0 523 305 52 14 chrX 5049911 5049950 -171924190 - MIR SINE MIR -43 219 183 1919 139 133 52 chrX 5049950 5050218 -171923922 + LTR54B LTR ERV1 1 246 -252 1959 155 3 3 chrX 5050218 5050521 -171923619 - AluJo SINE Alu -8 304 2 1919 139 133 52 chrX 5050521 5050712 -171923428 + LTR54B LTR ERV1 246 497 -1 523 305 52 14 chrX 5050712 5050882 -171923258 - MIR SINE MIR -79 183 2 2236 123 0 0 chrX 5051491 5051799 -171922341 + AluSx SINE Alu 1 308 -4 234 373 102 8 chrX 5052095 5052213 -171921927 + MER91A DNA MER1_type 21 149 -47 1706 175 125 0 chrX 5053175 5053478 -171920662 + MER58B DNA MER1_type 1 341 0 277 285 122 47 chrX 5053479 5053693 -171920447 + MLT1K LTR MaLR 69 298 -290 4779 183 55 9 chrX 5053866 5055546 -171918594 - L1MB2 LINE L1 0 6235 4156 198 0 0 0 chrX 5055546 5055568 -171918572 + (TG)n Simple_repeat Simple_repeat 1 22 0 4779 183 55 9 chrX 5055568 5056028 -171918112 - L1MB2 LINE L1 -2079 4156 3719 26457 153 16 21 chrX 5056034 5062148 -171911992 + L1PA10 LINE L1 271 6449 -34 1524 153 16 4 chrX 5062148 5062396 -171911744 - Tigger1 DNA MER2_type -89 2329 2079 2376 236 38 39 chrX 5062414 5063320 -171910820 - L1MB2 LINE L1 -4516 1625 606 404 334 16 52 chrX 5063513 5063897 -171910243 - L1MB2 LINE L1 -5523 608 4 1807 130 18 0 chrX 5063927 5064211 -171909929 - L1MC3 LINE L1 -18 7767 7479 382 308 25 13 chrX 5064316 5064475 -171909665 - MIR3 SINE MIR -40 168 8 5519 84 6 4 chrX 5064648 5065361 -171908779 - L1PB1 LINE L1 0 6151 5438 2439 104 0 0 chrX 5065374 5065681 -171908459 - AluSg SINE Alu -3 307 1 216 97 0 0 chrX 5065801 5065832 -171908308 + (TCCA)n Simple_repeat Simple_repeat 3 33 0 274 246 0 0 chrX 5065856 5065917 -171908223 - L2 LINE L2 -3 3310 3250 1275 175 0 44 chrX 5066896 5067125 -171907015 + MER58A DNA MER1_type 2 220 -4 3533 152 19 21 chrX 5067357 5067806 -171906334 + MER45B DNA AcHobo 421 870 -711 2291 101 0 0 chrX 5067806 5068094 -171906046 + AluSc SINE Alu 1 288 -21 3533 152 19 21 chrX 5068094 5068263 -171905877 + MER45B DNA AcHobo 870 1038 -2 2330 102 3 0 chrX 5068643 5068947 -171905193 - AluSp SINE Alu -8 305 1 441 282 16 8 chrX 5071431 5071555 -171902585 + MER94 DNA DNA 8 132 -2 248 241 11 64 chrX 5071563 5071750 -171902390 + (TCTA)n Simple_repeat Simple_repeat 4 180 0 310 308 0 32 chrX 5071847 5072003 -171902137 + CT-rich Low_complexity Low_complexity 2 152 0 573 204 219 0 chrX 5072234 5072371 -171901769 + MER5B DNA MER1_type 11 177 -1 227 53 0 26 chrX 5074359 5074397 -171899743 + (CAAA)n Simple_repeat Simple_repeat 1 37 0 2890 162 5 43 chrX 5074402 5075026 -171899114 + L1MB4 LINE L1 5558 6157 -23 236 189 0 0 chrX 5075396 5075449 -171898691 + (TA)n Simple_repeat Simple_repeat 1 53 0 233 50 0 50 chrX 5077293 5077333 -171896807 + (TTTCC)n Simple_repeat Simple_repeat 2 39 0 320 242 30 20 chrX 5077911 5078010 -171896130 - MER5A DNA MER1_type -2 187 88 553 162 29 108 chrX 5078085 5078289 -171895851 + MER53 DNA DNA 1 188 -1 199 277 0 0 chrX 5078339 5078386 -171895754 + MER5A DNA MER1_type 29 75 -114 415 235 106 59 chrX 5078450 5078620 -171895520 + MER5B DNA MER1_type 1 178 0 32 0 0 0 chrX 5078637 5078669 -171895471 + AT_rich Low_complexity Low_complexity 1 32 0 862 175 34 34 chrX 5078735 5078912 -171895228 + MER5A DNA MER1_type 13 189 0 408 247 170 46 chrX 5078915 5079109 -171895031 + MIR SINE MIR 34 251 -11 431 243 22 20 chrX 5079859 5079988 -171894152 + MIR SINE MIR 20 143 -66 845 187 144 0 chrX 5080005 5080192 -171893948 + MER20 DNA MER1_type 6 219 0 318 323 31 0 chrX 5080192 5080288 -171893852 + MIR SINE MIR 158 256 -6 392 235 228 7 chrX 5080375 5080524 -171893616 + MIR SINE MIR 50 231 -31 327 296 136 8 chrX 5080661 5080793 -171893347 - MIR SINE MIR -109 153 5 222 333 101 0 chrX 5082575 5082674 -171891466 + L2 LINE L2 3164 3272 0 266 300 56 11 chrX 5082771 5082861 -171891279 - MIR SINE MIR -12 250 157 403 221 115 111 chrX 5082952 5083196 -171890944 + L1ME4a LINE L1 5871 6115 -6 519 243 88 21 chrX 5083288 5083616 -171890524 + L1MC4a LINE L1 5475 5943 -1865 390 318 35 29 chrX 5083632 5083802 -171890338 + MIR SINE MIR 21 191 -71 468 242 0 0 chrX 5083847 5083942 -171890198 - L2 LINE L2 -1 3312 3218 856 170 18 18 chrX 5084016 5084187 -171889953 + MSTD LTR MaLR 5 175 -221 203 226 147 20 chrX 5084353 5084455 -171889685 - L2 LINE L2 0 3313 3199 484 326 14 0 chrX 5085260 5085293 -171888847 + MIR3 SINE MIR 42 73 -135 957 215 51 9 chrX 5085293 5085507 -171888633 - MER58A DNA MER1_type -1 223 1 484 326 14 0 chrX 5085507 5085620 -171888520 + MIR3 SINE MIR 73 190 -18 241 194 0 75 chrX 5086846 5086913 -171887227 + CT-rich Low_complexity Low_complexity 3 64 0 619 247 146 0 chrX 5087993 5088151 -171885989 - MER5A DNA MER1_type 0 189 9 1669 121 8 8 chrX 5088465 5088704 -171885436 - AluSg SINE Alu -13 297 59 870 151 7 0 chrX 5089312 5089451 -171884689 + MER58B DNA MER1_type 202 341 0 23 33 0 0 chrX 5090520 5090550 -171883590 + AT_rich Low_complexity Low_complexity 1 30 0 473 263 15 0 chrX 5091150 5091287 -171882853 + L2 LINE L2 2295 2433 -881 1293 200 29 6 chrX 5091470 5091785 -171882355 + MER33 DNA MER1_type 2 323 -1 202 233 23 0 chrX 5091922 5091965 -171882175 + L2 LINE L2 3265 3308 -5 211 301 178 0 chrX 5091990 5092063 -171882077 + MIR3 SINE MIR 98 183 -25 2098 132 69 65 chrX 5092192 5092421 -171881719 + Tigger2a DNA MER2_type 1 234 -2474 2383 80 0 6 chrX 5092421 5092733 -171881407 - AluY SINE Alu -1 310 1 2098 132 69 65 chrX 5092733 5092935 -171881205 + Tigger2a DNA MER2_type 234 434 0 207 146 0 0 chrX 5094035 5094076 -171880064 + (TTTTC)n Simple_repeat Simple_repeat 5 45 0 1834 159 18 11 chrX 5094593 5094876 -171879264 + AluJb SINE Alu 1 285 -27 983 145 6 0 chrX 5094876 5095048 -171879092 + (TA)n Simple_repeat Simple_repeat 1 173 0 346 327 99 12 chrX 5095535 5095697 -171878443 - MIR SINE MIR -51 211 36 1566 162 7 33 chrX 5095797 5096100 -171878040 - AluJo SINE Alu -17 295 1 32376 37 4 2 chrX 5096923 5101858 -171872282 - L1PA4 LINE L1 0 6155 1209 1998 134 10 13 chrX 5104842 5105155 -171868985 + AluSx SINE Alu 1 312 0 199 325 78 0 chrX 5109159 5109236 -171864904 + L3 LINE CR1 1483 1565 -12 948 217 54 5 chrX 5110293 5110496 -171863644 - MER58A DNA MER1_type -1 223 11 427 263 91 20 chrX 5110484 5110682 -171863458 + LTR16C LTR ERVL 256 467 -24 * 197 33 33 0 chrX 5110683 5110713 -171863427 + (CAAAAA)n Simple_repeat Simple_repeat 2 32 0 1937 142 3 3 chrX 5111397 5111685 -171862455 - AluJb SINE Alu -24 288 1 251 220 0 0 chrX 5112227 5112286 -171861854 + MLT1I LTR MaLR 85 143 -266 333 263 35 26 chrX 5112359 5112473 -171861667 + MLT1I LTR MaLR 260 374 -35 351 293 43 9 chrX 5112609 5112725 -171861415 + MIR SINE MIR 3 122 -140 2821 234 66 5 chrX 5113832 5115077 -171859063 + L1ME1 LINE L1 4841 6160 -6 182 36 0 36 chrX 5115443 5115471 -171858669 + (TTCA)n Simple_repeat Simple_repeat 4 30 0 402 203 203 15 chrX 5115649 5115782 -171858358 + MLT1H LTR MaLR 96 253 -296 253 288 184 0 chrX 5115862 5115987 -171858153 + MLT1H LTR MaLR 398 545 -4 1683 245 96 21 chrX 5116008 5116531 -171857609 - MER68 LTR ERV1 0 562 1 638 231 55 28 chrX 5116774 5116956 -171857184 + MIR SINE MIR 54 240 -22 370 208 189 19 chrX 5117907 5118013 -171856127 + MER63 DNA MER1_type 1 750 -312 292 188 12 12 chrX 5118077 5118157 -171855983 + GA-rich Low_complexity Low_complexity 4 83 0 255 271 123 25 chrX 5118175 5118297 -171855843 - MIR SINE MIR -6 256 123 1609 101 5 0 chrX 5118298 5118506 -171855634 + AluSp SINE Alu 1 209 -104 337 178 44 11 chrX 5119196 5119286 -171854854 - L1MD2 LINE L1 -2 6357 6265 271 203 68 0 chrX 5119291 5119365 -171854775 - L1MD3 LINE L1 -121 7874 7796 300 91 0 0 chrX 5122627 5122671 -171851469 + (CA)n Simple_repeat Simple_repeat 1 44 0 566 277 142 35 chrX 5123171 5123463 -171850677 - L2 LINE L2 -257 3056 2744 183 156 0 0 chrX 5123496 5123528 -171850612 + T-rich Low_complexity Low_complexity 1 32 0 272 303 88 72 chrX 5123666 5124121 -171850019 + MLT1J LTR MaLR 1 462 -49 1715 184 0 3 chrX 5124380 5124686 -171849454 - AluJb SINE Alu 0 305 1 262 313 20 61 chrX 5125000 5125147 -171848993 - MIR SINE MIR -50 212 72 24 0 0 0 chrX 5126081 5126105 -171848035 + AT_rich Low_complexity Low_complexity 1 24 0 960 226 18 18 chrX 5126979 5127196 -171846944 + MER20 DNA MER1_type 3 219 0 1653 151 42 33 chrX 5127569 5127900 -171846240 - THE1B LTR MaLR 0 364 31 469 277 67 25 chrX 5128017 5128255 -171845885 - MER112 DNA MER1_type -12 248 1 553 258 71 54 chrX 5128677 5128917 -171845223 + MIR SINE MIR 19 262 0 711 219 144 0 chrX 5129072 5129232 -171844908 - MER5A DNA MER1_type -6 183 1 2197 141 60 29 chrX 5129462 5129844 -171844296 + MSTD LTR MaLR 1 394 -2 771 231 87 28 chrX 5130832 5131118 -171843022 + MER33 DNA MER1_type 4 306 -18 3559 194 11 7 chrX 5131137 5131886 -171842254 - L1MB7 LINE L1 -16 6168 5417 596 188 8 0 chrX 5132225 5132342 -171841798 + MER94 DNA DNA 16 133 -1 357 288 37 85 chrX 5133805 5134087 -171840053 + LTR16A1 LTR ERVL 185 468 -23 765 191 56 0 chrX 5134109 5134287 -171839853 - MER53 DNA DNA 0 189 2 246 332 73 41 chrX 5134298 5134454 -171839686 - MIR SINE MIR -65 143 21 202 337 79 11 chrX 5134874 5134963 -171839177 + MIR SINE MIR 1 95 -167 1839 246 32 14 chrX 5134974 5135478 -171838662 - LTR40a LTR ERVL -1 518 6 251 241 52 0 chrX 5135483 5135541 -171838599 + MIR SINE MIR 113 173 -89 219 322 0 0 chrX 5135697 5135756 -171838384 - L2 LINE L2 -5 3308 3250 190 259 185 44 chrX 5135764 5135899 -171838241 + MIR SINE MIR 39 192 -70 244 217 43 29 chrX 5136710 5136779 -171837361 + HAL1b LINE L1 415 484 -864 214 194 28 0 chrX 5136925 5136997 -171837143 + GA-rich Low_complexity Low_complexity 2 75 0 201 39 0 0 chrX 5137034 5137060 -171837080 + (TG)n Simple_repeat Simple_repeat 2 27 0 488 164 107 0 chrX 5137552 5137674 -171836466 + L1MA4 LINE L1 6166 6300 0 24 32 0 0 chrX 5137746 5137777 -171836363 + AT_rich Low_complexity Low_complexity 1 31 0 495 305 147 29 chrX 5138020 5138087 -171836053 + L1M4 LINE L1 3230 3288 -2858 2054 134 3 0 chrX 5138087 5138385 -171835755 + AluSx SINE Alu 1 299 -13 495 305 147 29 chrX 5138385 5138773 -171835367 + L1M4 LINE L1 3288 3739 -2407 229 276 15 45 chrX 5138781 5138915 -171835225 + L1M4 LINE L1 3910 4039 -2107 486 310 62 48 chrX 5139129 5139533 -171834607 + L1M4 LINE L1 4292 4702 -1444 256 271 25 17 chrX 5139748 5139866 -171834274 + MLT1L LTR MaLR 147 265 -350 205 354 34 72 chrX 5140327 5140590 -171833550 + L2 LINE L2 2838 3090 -182 816 128 0 0 chrX 5141501 5141610 -171832530 + FLAM_C SINE Alu 11 119 -24 1514 283 38 17 chrX 5141615 5142085 -171832055 + MLT1E LTR MaLR 114 593 0 574 295 51 30 chrX 5142095 5142329 -171831811 - L2 LINE L2 -173 3140 2902 207 250 0 0 chrX 5142935 5142975 -171831165 + L2 LINE L2 3218 3257 -15 289 354 63 8 chrX 5143175 5143302 -171830838 + L2 LINE L2 3139 3272 0 300 301 82 27 chrX 5143846 5143992 -171830148 - L2 LINE L2 0 3313 3160 1088 191 77 111 chrX 5144289 5144667 -171829473 - MLT1A1 LTR MaLR 0 365 1 610 261 18 125 chrX 5145178 5145722 -171828418 + HAL1 LINE L1 526 1011 -1496 * 718 303 110 42 chrX 5145717 5146221 -171827919 + HAL1 LINE L1 1672 2249 -258 2239 48 0 7 chrX 5146221 5146494 -171827646 + AluY SINE Alu 41 311 0 718 303 110 42 chrX 5146494 5146772 -171827368 + HAL1 LINE L1 2249 2507 0 709 239 78 29 chrX 5147289 5147494 -171826646 - MIR SINE MIR 0 262 48 1050 166 52 14 chrX 5148623 5148834 -171825306 - MER20 DNA MER1_type 0 219 1 314 219 238 9 chrX 5149783 5149888 -171824252 + MER5A DNA MER1_type 61 189 0 220 229 0 0 chrX 5150399 5150447 -171823693 + T-rich Low_complexity Low_complexity 1 48 0 403 101 0 76 chrX 5151114 5151222 -171822918 - AluSg/x SINE Alu 0 309 216 239 293 13 93 chrX 5151794 5151944 -171822196 - MIR SINE MIR -6 256 119 1942 155 0 13 chrX 5152606 5152916 -171821224 - AluJo SINE Alu -6 306 1 712 290 178 55 chrX 5153943 5154757 -171819383 - L2 LINE L2 -571 2743 1830 1284 206 35 14 chrX 5154765 5155109 -171819031 - Charlie1 DNA MER1_type 0 2761 2411 200 371 67 0 chrX 5155187 5155276 -171818864 - L2 LINE L2 -1826 1488 1394 2490 84 0 3 chrX 5155734 5156045 -171818095 + AluSg SINE Alu 1 310 0 701 150 8 0 chrX 5156425 5156558 -171817582 + (TCCA)n Simple_repeat Simple_repeat 1 134 0 254 286 91 38 chrX 5158042 5158252 -171815888 + L2 LINE L2 2140 2360 -954 257 239 22 22 chrX 5159347 5159481 -171814659 + GA-rich Low_complexity Low_complexity 3 136 0 23 33 0 0 chrX 5159929 5159959 -171814181 + AT_rich Low_complexity Low_complexity 1 30 0 201 261 108 63 chrX 5160665 5160776 -171813364 + MIR SINE MIR 2 117 -145 291 299 204 34 chrX 5162008 5162155 -171811985 + MIR SINE MIR 14 185 -77 708 249 12 25 chrX 5162155 5162407 -171811733 - LTR16C LTR ERVL 0 491 202 316 224 93 107 chrX 5163726 5163931 -171810209 + MLT1J LTR MaLR 224 425 -86 * 1579 228 102 7 chrX 5163927 5164379 -171809761 + HsTC2 DNA Tc2 19 513 -1385 1011 177 39 99 chrX 5164376 5164709 -171809431 + HsTC2 DNA Tc2 1269 1757 -141 * 297 209 309 0 chrX 5166264 5166374 -171807766 - MER20 DNA MER1_type -75 144 1 252 267 47 58 chrX 5167038 5167124 -171807016 - MER5B DNA MER1_type -36 142 58 21 0 0 0 chrX 5167217 5167238 -171806902 + AT_rich Low_complexity Low_complexity 1 21 0 231 97 0 0 chrX 5167263 5167294 -171806846 + LTR47A LTR ERVL 1 31 -421 1607 136 101 0 chrX 5167342 5167628 -171806512 + LTR47A LTR ERVL 130 444 -8 930 265 9 9 chrX 5167713 5167932 -171806208 + MER58A DNA MER1_type 2 220 -4 662 332 21 17 chrX 5167982 5168220 -171805920 - MIR SINE MIR -3 259 21 2390 176 73 13 chrX 5168310 5168786 -171805354 + MLT1D LTR MaLR 1 505 0 1088 169 9 65 chrX 5169347 5169578 -171804562 - MER20 DNA MER1_type 0 219 2 990 89 0 0 chrX 5170066 5170201 -171803939 + L1MA2 LINE L1 6170 6304 0 781 219 13 0 chrX 5170419 5170570 -171803570 - MER5B DNA MER1_type 0 178 26 845 263 13 18 chrX 5170576 5170800 -171803340 + MER58A DNA MER1_type 1 223 -1 332 303 93 18 chrX 5171041 5171374 -171802766 + L1MC5 LINE L1 7325 7682 -279 988 284 139 60 chrX 5171903 5172581 -171801559 - L2 LINE L2 -8 3305 2551 1574 152 32 127 chrX 5172581 5172982 -171801158 - MLT1A1 LTR MaLR -2 363 1 988 284 139 60 chrX 5172982 5173152 -171800988 - L2 LINE L2 -762 2551 2396 317 281 230 7 chrX 5173180 5173319 -171800821 + L2 LINE L2 2896 3065 -248 300 232 9 18 chrX 5174217 5174329 -171799811 + GA-rich Low_complexity Low_complexity 3 113 0 256 281 16 0 chrX 5174416 5174480 -171799660 + L2 LINE L2 2928 2992 -321 2921 124 18 23 chrX 5175739 5176174 -171797966 + Tigger2a DNA MER2_type 2 434 0 287 353 15 29 chrX 5176302 5176438 -171797702 - L2 LINE L2 -32 3240 3107 360 269 0 13 chrX 5177665 5177743 -171796397 - L2 LINE L2 -45 3268 3192 21 0 0 0 chrX 5178309 5178330 -171795810 + AT_rich Low_complexity Low_complexity 1 21 0 201 156 0 0 chrX 5178889 5178921 -171795219 + (TATG)n Simple_repeat Simple_repeat 2 33 0 592 280 100 18 chrX 5178923 5179312 -171794828 + L1ME4a LINE L1 5585 6005 -116 216 173 13 40 chrX 5180890 5180965 -171793175 + GA-rich Low_complexity Low_complexity 4 76 0 202 194 0 0 chrX 5181317 5181353 -171792787 + L3 LINE CR1 1540 1575 -2 373 113 0 0 chrX 5182319 5182372 -171791768 - MER53 DNA DNA -1 188 136 233 143 0 0 chrX 5182379 5182414 -171791726 - MER53 DNA DNA -154 35 1 591 122 0 0 chrX 5182587 5182677 -171791463 - AluSp/q SINE Alu 0 313 224 23 0 0 0 chrX 5182725 5182748 -171791392 + AT_rich Low_complexity Low_complexity 1 23 0 1754 120 4 29 chrX 5182941 5183216 -171790924 + AluSx SINE Alu 38 305 -7 304 202 228 35 chrX 5183216 5183330 -171790810 - MER3 DNA MER1_type -73 136 1 480 250 122 53 chrX 5183552 5183740 -171790400 + MIR3 SINE MIR 2 202 -6 180 353 168 37 chrX 5185276 5185466 -171788674 + MIR SINE MIR 33 247 -15 3544 145 25 58 chrX 5185574 5185755 -171788385 - L1MA7 LINE L1 0 6291 6106 2147 114 3 3 chrX 5185755 5186053 -171788087 - AluSx SINE Alu -14 298 1 3544 145 25 58 chrX 5186053 5186393 -171787747 - L1MA7 LINE L1 -185 6106 5756 297 0 0 0 chrX 5186393 5186426 -171787714 + (TA)n Simple_repeat Simple_repeat 1 33 0 3544 145 25 58 chrX 5186426 5186610 -171787530 - L1MA7 LINE L1 -535 5756 5607 2424 87 7 7 chrX 5186610 5186920 -171787220 - AluSg SINE Alu 0 310 1 3544 145 25 58 chrX 5186920 5186941 -171787199 - L1MA7 LINE L1 -684 5607 5587 952 211 14 19 chrX 5186981 5187190 -171786950 - L1ME3 LINE L1 -1 6161 5954 1758 184 0 7 chrX 5190712 5191011 -171783129 - AluJb SINE Alu -15 297 1 602 299 45 0 chrX 5191217 5191371 -171782769 + MIR3 SINE MIR 37 197 -11 301 329 50 50 chrX 5191556 5191696 -171782444 - L2 LINE L2 0 3272 3133 895 167 45 81 chrX 5191745 5191967 -171782173 - MER20 DNA MER1_type 0 219 6 555 298 63 21 chrX 5192292 5192530 -171781610 - L2 LINE L2 -3 3310 3063 1208 0 21 0 chrX 5192665 5192807 -171781333 + (CTATG)n Simple_repeat Simple_repeat 3 147 0 378 0 0 0 chrX 5195595 5195637 -171778503 + (CA)n Simple_repeat Simple_repeat 2 43 0 25 65 0 0 chrX 5195648 5195694 -171778446 + AT_rich Low_complexity Low_complexity 1 46 0 189 154 0 0 chrX 5198594 5198633 -171775507 + (TG)n Simple_repeat Simple_repeat 2 40 0 234 322 26 26 chrX 5199147 5199262 -171774878 - L2 LINE L2 0 3272 3158 1103 195 96 54 chrX 5199526 5200067 -171774073 + MLT1E3 LTR MaLR 1 622 -2 233 345 46 0 chrX 5200302 5200389 -171773751 - L2 LINE L2 -41 3231 3141 653 200 18 24 chrX 5200644 5200809 -171773331 + MER96B DNA MER1_type? 244 407 -10 651 241 37 6 chrX 5202822 5202984 -171771156 - MER5B DNA MER1_type -5 173 7 376 203 76 0 chrX 5203249 5203328 -171770812 - MER53 DNA DNA 0 189 105 372 229 72 0 chrX 5203261 5203344 -171770796 + MER53 DNA DNA 23 111 -78 * 256 116 23 0 chrX 5203343 5203386 -171770754 + MER53 DNA DNA 68 111 -78 * 623 124 22 66 chrX 5203383 5203520 -171770620 - MER53 DNA DNA -58 131 1 219 303 66 0 chrX 5203553 5203629 -171770511 - MIR SINE MIR -11 251 171 908 144 0 0 chrX 5204959 5205091 -171769049 - FLAM_C SINE Alu -1 132 1 21 57 0 0 chrX 5205336 5205371 -171768769 + AT_rich Low_complexity Low_complexity 1 35 0 273 365 18 41 chrX 5205478 5205697 -171768443 + L2 LINE L2 2857 3070 -202 43 35 0 0 chrX 5206045 5206102 -171768038 + AT_rich Low_complexity Low_complexity 1 57 0 2198 128 0 0 chrX 5206377 5206683 -171767457 - AluSx SINE Alu -6 306 1 223 175 235 0 chrX 5207075 5207164 -171766976 - MIR SINE MIR -78 130 1 203 297 45 90 chrX 5207530 5207796 -171766344 + L2 LINE L2 2462 2715 -599 197 373 45 0 chrX 5208557 5208667 -171765473 + L2 LINE L2 3141 3255 -17 233 345 42 47 chrX 5208718 5208909 -171765231 + L2 LINE L2 2568 2757 -557 198 315 45 84 chrX 5209043 5209221 -171764919 + L2 LINE L2 2933 3103 -169 182 250 313 0 chrX 5209305 5209369 -171764771 + L2 LINE L2 3189 3272 0 218 366 52 0 chrX 5209931 5210065 -171764075 - MIR3 SINE MIR -61 147 7 2008 205 12 2 chrX 5210684 5211088 -171763052 + MER74A LTR ERVL 121 528 -30 7974 38 1 0 chrX 5212030 5213073 -171761067 + L1PA5 LINE L1 5111 6154 0 21 36 0 0 chrX 5213073 5213101 -171761039 + AT_rich Low_complexity Low_complexity 1 28 0 896 199 187 19 chrX 5213282 5213584 -171760556 + MLT1C LTR MaLR 133 461 -6 2346 109 0 6 chrX 5215512 5215824 -171758316 + AluSg SINE Alu 1 310 0 2033 206 74 0 chrX 5217085 5217531 -171756609 + L1MB8 LINE L1 5699 6177 -1 519 227 62 8 chrX 5217853 5217981 -171756159 + MIR SINE MIR 128 262 0 465 214 0 0 chrX 5218421 5218510 -171755630 + MER3 DNA MER1_type 1 89 -120 499 152 22 0 chrX 5218594 5218686 -171755454 - L1MB7 LINE L1 0 6184 6091 970 166 44 6 chrX 5218687 5218868 -171755272 - MLT1A1 LTR MaLR -173 192 5 2985 137 126 9 chrX 5218966 5219499 -171754641 + LTR49 LTR ERV1 1 595 0 2004 131 3 17 chrX 5219800 5220097 -171754043 + AluJb SINE Alu 1 293 -19 407 315 61 30 chrX 5221241 5221438 -171752702 + MIR SINE MIR 60 262 0 792 213 11 44 chrX 5221584 5221767 -171752373 - MER69A DNA AcHobo 0 177 1 309 224 24 35 chrX 5222635 5222720 -171751420 + L1ME3A LINE L1 5415 5498 -676 2535 244 37 18 chrX 5223100 5223777 -171750363 + L1ME3A LINE L1 5476 6165 -5 2287 88 7 0 chrX 5224092 5224386 -171749754 - AluSc SINE Alu -13 296 1 23 0 0 0 chrX 5225127 5225150 -171748990 + AT_rich Low_complexity Low_complexity 1 23 0 471 266 140 63 chrX 5225393 5225806 -171748334 - HAL1b LINE L1 -428 920 476 180 0 0 0 chrX 5226670 5226690 -171747450 + (T)n Simple_repeat Simple_repeat 1 20 0 21 0 0 0 chrX 5227513 5227534 -171746606 + AT_rich Low_complexity Low_complexity 1 21 0 1898 160 10 3 chrX 5227744 5228051 -171746089 + AluJo SINE Alu 1 309 -3 27 0 0 0 chrX 5228109 5228136 -171746004 + AT_rich Low_complexity Low_complexity 1 27 0 257 317 89 24 chrX 5228716 5228892 -171745248 - MIR SINE MIR -57 205 13 27 0 0 0 chrX 5279848 5279875 -171694265 + AT_rich Low_complexity Low_complexity 1 27 0 1008 183 142 0 chrX 5280404 5280623 -171693517 - MIR SINE MIR -11 251 2 432 293 159 0 chrX 5280647 5280804 -171693336 + MER5A DNA MER1_type 1 182 -7 568 190 52 95 chrX 5281150 5281382 -171692758 + L1ME3A LINE L1 5927 6148 -22 697 211 23 12 chrX 5281631 5281802 -171692338 - L1MD3 LINE L1 -29 7966 7794 229 162 0 59 chrX 5281955 5282023 -171692117 - L1MC4 LINE L1 -1339 6703 6640 773 157 0 132 chrX 5282785 5283020 -171691120 - MER20 DNA MER1_type 0 219 16 208 291 55 63 chrX 5283190 5283317 -171690823 - MIR3 SINE MIR -5 203 78 825 279 95 23 chrX 5284301 5284648 -171689492 + MLT1J2 LTR MaLR 39 410 -40 21 0 0 0 chrX 5285212 5285233 -171688907 + AT_rich Low_complexity Low_complexity 1 21 0 1420 160 254 32 chrX 5285415 5285753 -171688387 + MER47B DNA MER2_type 6 418 0 480 275 26 54 chrX 5285942 5286152 -171687988 + MLT1H LTR MaLR 1 247 -302 261 252 78 35 chrX 5286250 5286365 -171687775 + MLT1H LTR MaLR 430 549 0 2586 35 0 16 chrX 5286442 5286757 -171687383 - AluY SINE Alu -1 310 1 768 229 41 0 chrX 5287333 5287503 -171686637 + MER5B DNA MER1_type 1 177 -1 294 246 140 35 chrX 5288192 5288306 -171685834 + L2 LINE L2 2252 2377 -937 337 308 0 0 chrX 5288430 5288521 -171685619 + L2 LINE L2 2395 2485 -829 1336 171 171 23 chrX 5288523 5288868 -171685272 + MSTD LTR MaLR 1 396 0 1262 274 98 19 chrX 5288868 5289292 -171684848 + L2 LINE L2 2485 2954 -359 495 259 0 17 chrX 5289292 5289408 -171684732 + MER81 DNA DNA 1 114 0 1262 274 98 19 chrX 5289408 5289484 -171684656 + L2 LINE L2 2954 3023 -290 208 294 119 8 chrX 5289786 5289912 -171684228 - MIR SINE MIR -74 188 49 554 322 18 0 chrX 5289976 5290147 -171683993 - MIR SINE MIR -19 243 70 716 151 42 17 chrX 5290192 5290311 -171683829 + FLAM_C SINE Alu 1 122 -11 35 0 0 0 chrX 5290319 5290354 -171683786 + AT_rich Low_complexity Low_complexity 1 35 0 813 249 11 0 chrX 5290354 5290535 -171683605 - MER58A DNA MER1_type -41 183 1 23 33 0 0 chrX 5290696 5290726 -171683414 + AT_rich Low_complexity Low_complexity 1 30 0 249 174 70 58 chrX 5290848 5290934 -171683206 + L1MC5 LINE L1 7831 7917 -44 569 352 134 30 chrX 5291468 5292583 -171681557 - L2 LINE L2 -5 3267 2033 190 326 116 0 chrX 5292624 5292710 -171681430 + MIR SINE MIR 129 224 -38 545 275 12 12 chrX 5292806 5292973 -171681167 + MLT1J2 LTR MaLR 2 168 -282 1458 202 18 21 chrX 5292974 5293311 -171680829 - MLT1C LTR MaLR 0 467 132 462 279 80 34 chrX 5293315 5293552 -171680588 + MLT1J2 LTR MaLR 168 415 -35 2110 104 35 0 chrX 5293587 5293925 -171680215 + L1MA4 LINE L1 5945 6294 -6 24 32 0 0 chrX 5293926 5293957 -171680183 + AT_rich Low_complexity Low_complexity 1 31 0 2035 183 7 27 chrX 5294021 5294425 -171679715 - MSTD LTR MaLR 0 396 1 215 328 99 6 chrX 5294625 5294796 -171679344 - L2 LINE L2 -1648 1666 1480 222 311 138 16 chrX 5294871 5295002 -171679138 - MIR SINE MIR -67 141 9 193 302 48 0 chrX 5297375 5297438 -171676702 + L2 LINE L2 2215 2280 -1034 303 352 213 0 chrX 5298216 5298540 -171675600 + L2 LINE L2 2282 2674 -640 306 268 65 29 chrX 5300372 5300510 -171673630 + MIR SINE MIR 39 181 -81 569 318 70 4 chrX 5300565 5300807 -171673333 - MIR SINE MIR -1 261 4 370 298 48 52 chrX 5300884 5301156 -171672984 - LTR16A1 LTR ERVL 0 457 187 447 35 0 0 chrX 5302498 5302555 -171671585 + (CA)n Simple_repeat Simple_repeat 2 58 0 243 0 0 0 chrX 5302554 5302581 -171671559 + (GA)n Simple_repeat Simple_repeat 2 28 0 * 2400 95 0 0 chrX 5303542 5303847 -171670293 - AluSx SINE Alu -7 305 1 329 259 52 30 chrX 5303859 5303994 -171670146 + L1ME4a LINE L1 5949 6086 -35 342 349 18 0 chrX 5304673 5304782 -171669358 + MIR SINE MIR 29 139 -69 818 163 0 22 chrX 5304918 5305053 -171669087 + FLAM_C SINE Alu 2 133 0 1330 161 5 27 chrX 5305291 5305515 -171668625 + MER20 DNA MER1_type 1 219 0 1632 203 19 63 chrX 5306621 5307035 -171667105 - MSTD LTR MaLR 0 396 1 189 0 0 0 chrX 5307070 5307091 -171667049 + (A)n Simple_repeat Simple_repeat 1 21 0 713 286 65 14 chrX 5307443 5307796 -171666344 - MER115 DNA AcHobo 0 693 323 321 231 0 51 chrX 5307922 5308000 -171666140 - MER58B DNA MER1_type 0 341 268 306 0 0 0 chrX 5308473 5308507 -171665633 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1629 183 53 17 chrX 5308509 5308809 -171665331 + AluJo SINE Alu 2 312 0 745 198 0 0 chrX 5309422 5309548 -171664592 + FLAM_C SINE Alu 1 126 -17 1815 189 0 7 chrX 5309565 5309867 -171664273 + AluJo SINE Alu 1 300 -12 380 169 13 0 chrX 5310605 5310682 -171663458 + CT-rich Low_complexity Low_complexity 1 78 0 1986 155 0 3 chrX 5310682 5310986 -171663154 - AluJo SINE Alu -9 303 1 238 281 53 18 chrX 5312157 5312271 -171661869 + MLT1J1 LTR MaLR 21 138 -308 997 199 14 5 chrX 5312337 5312553 -171661587 - MER58B DNA MER1_type -1 340 123 1756 205 6 16 chrX 5312598 5312964 -171661176 + MLT1A1 LTR MaLR 4 365 0 291 282 154 13 chrX 5313001 5313150 -171660990 + MLT1J2 LTR MaLR 281 450 0 2089 84 3 50 chrX 5314165 5314495 -171659645 + AluSp SINE Alu 1 316 0 735 204 26 0 chrX 5314497 5314649 -171659491 - MER58A DNA MER1_type -23 201 46 1037 179 19 5 chrX 5315545 5315752 -171658388 - MER20 DNA MER1_type 0 219 10 243 157 0 59 chrX 5316213 5316264 -171657876 + MIR SINE MIR 206 253 -9 291 308 70 26 chrX 5316297 5316483 -171657657 - MIR SINE MIR -46 216 19 553 245 162 10 chrX 5316634 5316838 -171657302 - MIR SINE MIR -8 254 20 202 233 133 33 chrX 5317556 5317616 -171656524 + L2 LINE L2 3207 3272 0 260 27 27 0 chrX 5318589 5318626 -171655514 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 247 248 99 20 chrX 5318692 5318793 -171655347 - L2 LINE L2 -5 3308 3200 909 122 21 43 chrX 5319173 5319361 -171654779 - MER53 DNA DNA 0 189 6 275 345 62 0 chrX 5319703 5319816 -171654324 + L2 LINE L2 3107 3226 -46 2461 95 32 16 chrX 5320022 5320391 -171653749 + THE1C LTR MaLR 1 375 0 467 234 9 0 chrX 5320521 5320628 -171653512 - MER94 DNA DNA -3 131 24 270 264 12 49 chrX 5320931 5321024 -171653116 - MER5A DNA MER1_type -68 121 21 193 275 0 62 chrX 5320965 5321045 -171653095 + MER5B DNA MER1_type 103 177 -1 * 301 271 100 2 chrX 5321199 5321369 -171652771 - MIR SINE MIR -35 227 1 834 183 0 0 chrX 5321391 5321528 -171652612 + AluJb SINE Alu 138 274 -38 700 11 32 75 chrX 5321528 5321716 -171652424 + (TA)n Simple_repeat Simple_repeat 1 180 0 31 26 0 0 chrX 5321717 5321755 -171652385 + AT_rich Low_complexity Low_complexity 1 38 0 182 338 86 39 chrX 5322619 5322980 -171651160 - L2 LINE L2 -1324 1990 1613 335 331 69 0 chrX 5323156 5323301 -171650839 - MIR SINE MIR -20 242 88 268 325 13 13 chrX 5324309 5324466 -171649674 + MER103 DNA DNA 3 159 -7 345 47 0 0 chrX 5324749 5324792 -171649348 + (TC)n Simple_repeat Simple_repeat 2 44 0 1953 171 0 0 chrX 5324792 5325085 -171649055 - AluJo SINE Alu -19 293 1 30 0 0 0 chrX 5325503 5325533 -171648607 + AT_rich Low_complexity Low_complexity 1 30 0 2415 204 23 18 chrX 5325595 5326109 -171648031 + LTR40a LTR ERVL 1 517 -2 1119 153 0 6 chrX 5326331 5326508 -171647632 + AluJb SINE Alu 133 308 -4 1321 159 0 5 chrX 5328138 5328379 -171645761 + AluJb SINE Alu 85 324 0 968 209 58 5 chrX 5328452 5328658 -171645482 + MER20 DNA MER1_type 1 217 -2 3543 222 22 15 chrX 5328701 5328983 -171645157 + L1ME1 LINE L1 5296 5575 -591 3560 133 13 2 chrX 5328983 5329538 -171644602 - L1PA15 LINE L1 0 6165 5605 3543 222 22 15 chrX 5329538 5330111 -171644029 + L1ME1 LINE L1 5575 6157 -9 24 32 0 0 chrX 5330269 5330300 -171643840 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chrX 5330387 5330415 -171643725 + AT_rich Low_complexity Low_complexity 1 28 0 773 197 0 0 chrX 5330421 5330553 -171643587 - FLAM_C SINE Alu -11 132 1 240 262 24 0 chrX 5330667 5330751 -171643389 - L1ME LINE L1 -277 5844 5759 254 303 31 49 chrX 5330906 5331068 -171643072 + L2 LINE L2 2894 3052 -220 462 264 43 14 chrX 5331928 5332068 -171642072 + MLT1J2 LTR MaLR 21 164 -286 498 237 115 6 chrX 5332110 5332266 -171641874 + L1ME3A LINE L1 5987 6159 -11 2245 107 3 3 chrX 5332392 5332742 -171641398 - AluSp SINE Alu 0 313 3 269 146 0 21 chrX 5332746 5332794 -171641346 + MLT1I LTR MaLR 363 409 0 289 367 73 11 chrX 5332905 5333082 -171641058 + MER5A DNA MER1_type 1 188 -1 1746 195 13 0 chrX 5333219 5333517 -171640623 - AluJb SINE Alu -10 302 1 440 271 31 31 chrX 5333539 5333668 -171640472 + MIR3 SINE MIR 31 159 -49 1041 221 33 0 chrX 5334737 5334950 -171639190 - MER58A DNA MER1_type -4 220 1 344 106 0 0 chrX 5335138 5335185 -171638955 - tRNA-Met-e tRNA tRNA -23 52 6 866 232 76 54 chrX 5336013 5336529 -171637611 + MLT1G1 LTR MaLR 3 588 -2 1047 190 41 41 chrX 5336558 5336779 -171637361 - MER58A DNA MER1_type 0 224 4 200 333 49 12 chrX 5336782 5336863 -171637277 - L2 LINE L2 -349 2964 2881 693 174 56 28 chrX 5336942 5337086 -171637054 + MIR SINE MIR 94 241 -21 194 224 20 20 chrX 5337053 5337102 -171637038 + L2 LINE L2 3213 3261 -11 * 230 200 0 50 chrX 5337482 5337542 -171636598 - MER116 DNA Mariner -23 57 1 21 0 0 0 chrX 5337677 5337698 -171636442 + AT_rich Low_complexity Low_complexity 1 21 0 432 165 58 4 chrX 5339974 5340269 -171633871 - MLT1J LTR MaLR -16 495 59 770 197 101 56 chrX 5340309 5340507 -171633633 + MER58C DNA MER1_type 1 207 -8 24 67 0 0 chrX 5343410 5343455 -171630685 + AT_rich Low_complexity Low_complexity 1 45 0 285 345 5 10 chrX 5344318 5344524 -171629616 - L1MEc LINE L1 -5526 735 531 445 293 87 79 chrX 5344658 5345150 -171628990 - L1MEc LINE L1 -5539 531 36 1012 300 50 65 chrX 5345709 5346233 -171627907 - LTR67 LTR ERVL -2 555 40 200 312 205 39 chrX 5346320 5346388 -171627752 - MIR SINE MIR -6 256 201 210 71 0 0 chrX 5346388 5346416 -171627724 + (TTTAA)n Simple_repeat Simple_repeat 5 32 0 200 312 205 39 chrX 5346416 5346552 -171627588 - MIR SINE MIR -61 201 18 21 100 0 0 chrX 5347190 5347260 -171626880 + AT_rich Low_complexity Low_complexity 1 70 0 460 249 208 17 chrX 5347286 5347459 -171626681 + L3b LINE CR1 1354 1559 -24 1025 140 31 79 chrX 5348300 5348529 -171625611 - MER20 DNA MER1_type 0 219 2 226 265 17 88 chrX 5349255 5349436 -171624704 + LTR33A LTR ERVL 356 523 0 1787 197 39 58 chrX 5349521 5349988 -171624152 - MLT1C LTR MaLR 0 467 10 285 219 61 9 chrX 5351309 5351423 -171622717 - L1ME4a LINE L1 0 6121 6002 1702 148 60 76 chrX 5351464 5351883 -171622257 + LTR37A LTR ERV1 4 415 -11 852 170 0 0 chrX 5351970 5352105 -171622035 + AluJo SINE Alu 1 135 -177 24 0 0 0 chrX 5352105 5352129 -171622011 + AT_rich Low_complexity Low_complexity 1 24 0 370 294 114 5 chrX 5352164 5352211 -171621929 - L1ME4a LINE L1 -301 5820 5780 4081 130 8 65 chrX 5352211 5352944 -171621196 + LTR8 LTR ERV1 1 691 0 370 294 114 5 chrX 5352944 5353080 -171621060 - L1ME4a LINE L1 -341 5780 5617 438 20 0 0 chrX 5353315 5353366 -171620774 + (CA)n Simple_repeat Simple_repeat 2 52 0 217 242 23 181 chrX 5354045 5354260 -171619880 + MER5A DNA MER1_type 9 189 0 200 143 57 0 chrX 5355904 5355974 -171618166 + (TA)n Simple_repeat Simple_repeat 1 74 0 1419 233 95 40 chrX 5356810 5357334 -171616806 + MER68 LTR ERV1 3 555 -7 785 124 8 0 chrX 5358722 5358851 -171615289 + (TTCC)n Simple_repeat Simple_repeat 4 133 0 1020 188 16 0 chrX 5359738 5359924 -171614216 + MER5A DNA MER1_type 1 189 0 7828 187 43 19 chrX 5360543 5363696 -171610444 - L1MC1 LINE L1 -2 6331 3110 426 326 42 14 chrX 5364172 5364316 -171609824 - MIR SINE MIR -27 235 88 323 296 88 8 chrX 5364412 5364537 -171609603 - MIR SINE MIR -122 140 6 205 313 0 0 chrX 5364793 5364860 -171609280 + (CATA)n Simple_repeat Simple_repeat 2 68 0 569 218 9 109 chrX 5364865 5365076 -171609064 + MER112 DNA MER1_type 65 254 -6 37 62 0 0 chrX 5366204 5366269 -171607871 + AT_rich Low_complexity Low_complexity 1 65 0 197 286 93 57 chrX 5367155 5367295 -171606845 + MER5B DNA MER1_type 33 177 -1 3699 79 6 24 chrX 5367457 5368003 -171606137 - L1MA2 LINE L1 0 6304 5769 365 307 31 8 chrX 5369503 5369630 -171604510 - MIR SINE MIR -120 142 13 195 69 0 0 chrX 5370015 5370044 -171604096 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 975 286 111 49 chrX 5370414 5370789 -171603351 + MLT1K LTR MaLR 23 440 -148 965 215 6 0 chrX 5370789 5370966 -171603174 + MER45A DNA AcHobo 1 178 0 975 286 111 49 chrX 5370966 5371104 -171603036 + MLT1K LTR MaLR 440 568 -20 761 318 184 27 chrX 5371109 5371718 -171602422 - L3 LINE CR1 -13 1564 827 914 248 13 22 chrX 5371718 5371944 -171602196 + MER58A DNA MER1_type 1 224 0 761 318 184 27 chrX 5371944 5372041 -171602099 - L3 LINE CR1 -750 827 747 791 183 74 45 chrX 5372265 5372467 -171601673 + MER3 DNA MER1_type 2 209 0 244 311 54 0 chrX 5373099 5373173 -171600967 + L2 LINE L2 2215 2292 -1022 1180 258 67 39 chrX 5373175 5373699 -171600441 + MLT1H LTR MaLR 8 588 -2 409 239 35 35 chrX 5373901 5374014 -171600126 + L2 LINE L2 3160 3272 0 2064 191 0 3 chrX 5374263 5374629 -171599511 - MLT1A1 LTR MaLR 0 365 1 490 268 24 8 chrX 5374796 5374919 -171599221 + L2 LINE L2 3188 3312 -1 353 269 21 35 chrX 5375268 5375409 -171598731 - L1MC5 LINE L1 -34 7927 7789 504 198 10 30 chrX 5376336 5376437 -171597703 + MER5B DNA MER1_type 13 111 -67 810 212 61 40 chrX 5376442 5376640 -171597500 - MER63A DNA MER1_type -6 204 3 384 208 0 0 chrX 5376642 5376714 -171597426 + MER5B DNA MER1_type 104 175 -3 872 196 87 6 chrX 5376726 5376790 -171597350 - MER5A DNA MER1_type 0 189 132 2056 122 24 0 chrX 5376790 5377086 -171597054 + AluSq SINE Alu 1 303 -10 872 196 87 6 chrX 5377086 5377194 -171596946 - MER5A DNA MER1_type -57 132 3 201 286 124 38 chrX 5377486 5377591 -171596549 - L2 LINE L2 -20 3293 3180 332 209 418 8 chrX 5377836 5377970 -171596170 + MER5A DNA MER1_type 1 189 0 1766 186 73 6 chrX 5378212 5378529 -171595611 + MER58B DNA MER1_type 2 339 -2 267 185 139 74 chrX 5379823 5379931 -171594209 - MLT1E3 LTR MaLR -292 332 214 1013 143 6 6 chrX 5379958 5380119 -171594021 + MER5A DNA MER1_type 4 164 -25 1250 67 93 72 chrX 5380265 5380458 -171593682 + MER107 DNA MER1_type 1 197 0 910 245 130 66 chrX 5382185 5382909 -171591231 + HsTC2a DNA Tc2 3 634 -1261 1063 235 14 27 chrX 5382909 5383130 -171591010 - MER58A DNA MER1_type -2 222 5 910 245 130 66 chrX 5383130 5383239 -171590901 + HsTC2a DNA Tc2 634 735 -4 2489 66 0 0 chrX 5383680 5383981 -171590159 + AluY SINE Alu 2 302 -9 469 284 46 35 chrX 5384257 5384454 -171589686 - MLT1J2 LTR MaLR -2 448 250 1029 194 10 20 chrX 5384457 5384658 -171589482 - MER20 DNA MER1_type -3 216 18 23067 33 1 3 chrX 5385168 5388558 -171585582 + L1PA4 LINE L1 2769 6155 0 33 0 0 0 chrX 5388570 5388603 -171585537 + AT_rich Low_complexity Low_complexity 1 33 0 234 0 0 0 chrX 5389115 5389141 -171584999 + (T)n Simple_repeat Simple_repeat 1 26 0 212 128 51 0 chrX 5389217 5389256 -171584884 + (CAAA)n Simple_repeat Simple_repeat 4 44 0 672 210 95 91 chrX 5390928 5391145 -171582995 + MIR SINE MIR 1 221 -41 1990 153 0 0 chrX 5391145 5391440 -171582700 + AluSx SINE Alu 1 295 -17 672 210 95 91 chrX 5391440 5391474 -171582666 + MIR SINE MIR 221 253 -9 285 146 0 0 chrX 5391495 5391543 -171582597 + (CAG)n Simple_repeat Simple_repeat 1 48 0 211 224 0 0 chrX 5391643 5391692 -171582448 + (TAA)n Simple_repeat Simple_repeat 2 50 0 369 93 0 0 chrX 5392481 5392535 -171581605 + (CA)n Simple_repeat Simple_repeat 2 55 0 436 243 62 14 chrX 5393191 5393335 -171580805 + MLT1J1 LTR MaLR 1 151 -295 290 191 90 56 chrX 5393441 5393530 -171580610 + MLT1J1 LTR MaLR 349 440 -6 339 253 44 0 chrX 5393750 5393841 -171580299 + L1ME3A LINE L1 5620 5714 -456 754 210 185 20 chrX 5393844 5394165 -171579975 + L1ME3A LINE L1 5750 6122 -42 321 203 0 0 chrX 5395499 5395558 -171578582 - MER112 DNA MER1_type -183 77 19 992 241 84 125 chrX 5396200 5396360 -171577780 + MLT1L LTR MaLR 15 180 -435 369 294 119 30 chrX 5396360 5396561 -171577579 - MER20 DNA MER1_type 0 219 1 992 241 84 125 chrX 5396561 5396572 -171577568 + MLT1L LTR MaLR 180 190 -425 1253 184 4 43 chrX 5396572 5396805 -171577335 - MER58A DNA MER1_type 0 224 1 992 241 84 125 chrX 5396805 5397249 -171576891 + MLT1L LTR MaLR 190 606 -9 514 250 69 132 chrX 5397436 5397832 -171576308 + MLT1L LTR MaLR 37 506 -109 1613 189 94 3 chrX 5398538 5398845 -171575295 - MER58B DNA MER1_type -3 338 4 2765 13 0 10 chrX 5399375 5399680 -171574460 + AluYb8 SINE Alu 8 309 -9 435 236 31 50 chrX 5400150 5400311 -171573829 - L1MC4a LINE L1 -1858 5950 5793 407 260 141 7 chrX 5400704 5400879 -171573261 + L1ME4a LINE L1 5662 5853 -268 21 0 0 0 chrX 5401191 5401212 -171572928 + AT_rich Low_complexity Low_complexity 1 21 0 308 215 11 43 chrX 5401394 5401487 -171572653 - L1MC4a LINE L1 -1911 5897 5808 874 100 0 8 chrX 5401773 5401893 -171572247 - Tigger1 DNA MER2_type -1017 1401 1283 268 250 0 0 chrX 5401914 5401986 -171572154 - L1ME4a LINE L1 -3 6118 6047 16558 112 19 17 chrX 5402420 5403367 -171570773 - Tigger1 DNA MER2_type 0 2418 1474 841 108 0 0 chrX 5403367 5403478 -171570662 - HY1 scRNA scRNA -1 111 1 16558 112 19 17 chrX 5403478 5404942 -171569198 - Tigger1 DNA MER2_type -944 1474 2 507 243 51 36 chrX 5405273 5405470 -171568670 - MLT1H LTR MaLR -240 189 1 648 313 78 4 chrX 5405522 5405790 -171568350 + MLT1J1 LTR MaLR 51 338 -108 307 347 52 47 chrX 5405896 5406109 -171568031 - L2 LINE L2 -195 3077 2864 195 186 0 0 chrX 5406109 5406152 -171567988 + (TG)n Simple_repeat Simple_repeat 2 44 0 2465 77 0 7 chrX 5406212 5406522 -171567618 - AluY SINE Alu -3 308 1 768 166 108 0 chrX 5406862 5407001 -171567139 - MER58B DNA MER1_type -21 320 167 189 26 79 0 chrX 5407806 5407844 -171566296 + (TA)n Simple_repeat Simple_repeat 1 41 0 1836 167 93 0 chrX 5409056 5409368 -171564772 - MER58B DNA MER1_type 0 341 1 22 70 0 0 chrX 5413909 5413952 -171560188 + GC_rich Low_complexity Low_complexity 1 43 0 180 0 0 0 chrX 5414778 5414798 -171559342 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1131 247 21 132 chrX 5415613 5415666 -171558474 + L2 LINE L2 2644 2701 -612 402 21 0 0 chrX 5415666 5415713 -171558427 + (TG)n Simple_repeat Simple_repeat 2 48 0 1131 247 21 132 chrX 5415713 5416420 -171557720 + L2 LINE L2 2701 3313 0 188 161 0 0 chrX 5417407 5417438 -171556702 + MIR3 SINE MIR 155 185 -23 339 215 0 0 chrX 5417595 5417660 -171556480 + MIR SINE MIR 87 151 -111 1104 270 95 48 chrX 5418168 5418980 -171555160 - L2 LINE L2 0 3313 2455 981 181 0 0 chrX 5419015 5419181 -171554959 + FRAM SINE Alu 1 166 -10 825 169 0 0 chrX 5419233 5419394 -171554746 + FLAM_C SINE Alu 2 162 0 2832 273 89 32 chrX 5419416 5420546 -171553594 + L2 LINE L2 1465 2659 -655 270 285 16 57 chrX 5420698 5420821 -171553319 - MIR SINE MIR -45 217 100 227 387 51 7 chrX 5421026 5421163 -171552977 + MIR3 SINE MIR 19 161 -47 306 295 27 18 chrX 5422010 5422122 -171552018 - L2 LINE L2 0 3313 3201 335 347 67 21 chrX 5422247 5422440 -171551700 + MLT1L LTR MaLR 344 545 -70 297 0 0 0 chrX 5422468 5422501 -171551639 + (TC)n Simple_repeat Simple_repeat 2 34 0 343 276 97 64 chrX 5422761 5422907 -171551233 - MIR SINE MIR -61 147 32 2773 96 27 0 chrX 5423074 5423439 -171550701 + THE1C LTR MaLR 1 375 0 10891 110 37 34 chrX 5423439 5425015 -171549125 + THE1C-int LTR MaLR 1 1580 0 2813 109 5 5 chrX 5425015 5425390 -171548750 + THE1C LTR MaLR 1 375 0 389 325 50 0 chrX 5427707 5427827 -171546313 - L2 LINE L2 0 3272 3147 452 298 159 22 chrX 5428407 5428716 -171545424 - L2 LINE L2 -218 3054 2713 690 223 27 0 chrX 5428859 5429007 -171545133 + MER20 DNA MER1_type 68 219 0 2006 151 13 13 chrX 5429166 5429478 -171544662 + AluSx SINE Alu 1 312 0 662 293 11 0 chrX 5429605 5429779 -171544361 + MER91B DNA MER1_type 2 177 -13 460 219 161 19 chrX 5430029 5430184 -171543956 + MLT1J2 LTR MaLR 41 217 -233 689 310 57 8 chrX 5430418 5430663 -171543477 + MIR SINE MIR 5 261 -1 1605 144 89 10 chrX 5431100 5431483 -171542657 - Charlie1b DNA MER1_type -30 493 81 247 246 0 18 chrX 5431483 5431597 -171542543 + (TTA)n Simple_repeat Simple_repeat 3 114 0 311 243 10 78 chrX 5431602 5431705 -171542435 - Charlie1b DNA MER1_type -427 96 1 515 167 0 0 chrX 5432109 5432193 -171541947 - AluJ/FLAM SINE Alu -228 84 1 300 309 37 25 chrX 5432919 5433081 -171541059 - L3b LINE CR1 -318 1265 1102 457 146 11 11 chrX 5435214 5435303 -171538837 + L1PB2 LINE L1 6056 6144 -7 253 188 47 47 chrX 5435360 5435424 -171538716 - MIR SINE MIR -116 146 83 861 235 10 0 chrX 5435914 5436114 -171538026 + MER105 DNA DNA 1 202 -2 186 43 0 0 chrX 5436316 5436339 -171537801 + (GA)n Simple_repeat Simple_repeat 2 24 0 1381 153 63 0 chrX 5437126 5437348 -171536792 + AluJb SINE Alu 1 236 -76 406 300 47 47 chrX 5438757 5438821 -171535319 - MLT1K LTR MaLR -10 578 515 2064 156 111 32 chrX 5438821 5439017 -171535123 + MLT1D LTR MaLR 1 180 -325 210 37 0 0 chrX 5439017 5439044 -171535096 + (CAGG)n Simple_repeat Simple_repeat 2 28 0 2064 156 111 32 chrX 5439044 5439315 -171534825 + MLT1D LTR MaLR 180 505 0 406 300 47 47 chrX 5439315 5439503 -171534637 - MLT1K LTR MaLR -72 516 326 519 291 90 53 chrX 5439555 5439854 -171534286 - MLT1K LTR MaLR -277 311 2 28 61 0 0 chrX 5439869 5439918 -171534222 + AT_rich Low_complexity Low_complexity 1 49 0 25 51 0 0 chrX 5439944 5439983 -171534157 + AT_rich Low_complexity Low_complexity 1 39 0 35924 50 3 102 chrX 5440032 5446866 -171527274 - L1PA5 LINE L1 -8 6146 11 227 280 0 54 chrX 5447473 5447566 -171526574 + L2 LINE L2 3184 3271 -1 650 274 52 14 chrX 5448575 5448787 -171525353 + MIR SINE MIR 40 259 -3 1950 183 34 13 chrX 5449178 5449566 -171524574 + MSTD LTR MaLR 1 396 0 241 227 30 45 chrX 5449653 5449785 -171524355 + L1ME4a LINE L1 5987 6116 -5 921 182 34 0 chrX 5449846 5450022 -171524118 + MER58A DNA MER1_type 40 221 -3 611 224 35 7 chrX 5450169 5450312 -171523828 - MIR SINE MIR 0 262 116 243 323 10 40 chrX 5451295 5451394 -171522746 + L3 LINE CR1 1015 1110 -467 322 266 32 32 chrX 5451577 5451701 -171522439 + L1ME4a LINE L1 5932 6055 -66 219 146 0 24 chrX 5451702 5451743 -171522397 + (TTCC)n Simple_repeat Simple_repeat 3 42 0 664 301 47 55 chrX 5451828 5452213 -171521927 + L3 LINE CR1 1101 1482 -95 322 273 154 0 chrX 5453025 5453135 -171521005 + MIR SINE MIR 62 188 -74 1096 202 9 9 chrX 5453322 5453540 -171520600 - MER58A DNA MER1_type -6 218 1 519 263 60 0 chrX 5453550 5453683 -171520457 - MIR SINE MIR -114 148 8 1909 4 8 34 chrX 5454239 5454474 -171519666 - L1PA3 LINE L1 -11 6144 5916 877 208 63 10 chrX 5454646 5454853 -171519287 - MER20 DNA MER1_type -1 218 1 183 129 0 0 chrX 5455176 5455207 -171518933 + (T)n Simple_repeat Simple_repeat 1 31 0 3309 164 20 30 chrX 5455371 5456071 -171518069 + L1MB8 LINE L1 5485 6177 -1 1778 174 3 13 chrX 5456554 5456852 -171517288 - AluJo SINE Alu -11 301 7 442 369 127 14 chrX 5456852 5457269 -171516871 + L3 LINE CR1 553 1016 -561 207 315 19 0 chrX 5457380 5457434 -171516706 - L2 LINE L2 -60 3212 3158 423 339 166 11 chrX 5457549 5457826 -171516314 + L3 LINE CR1 1145 1464 -113 1235 231 72 6 chrX 5457848 5458066 -171516074 - MER58B DNA MER1_type -2079 341 94 1717 181 13 17 chrX 5458066 5458365 -171515775 - AluJo SINE Alu -14 298 1 1235 231 72 6 chrX 5458365 5458466 -171515674 - MER58B DNA MER1_type -2326 94 1 536 356 11 0 chrX 5458670 5458861 -171515279 - MIR SINE MIR -56 206 14 222 222 11 89 chrX 5459101 5459191 -171514949 + MIR SINE MIR 116 198 -64 279 246 15 15 chrX 5459683 5459748 -171514392 + L2 LINE L2 3026 3090 -182 290 306 0 0 chrX 5459948 5460020 -171514120 + MIR3 SINE MIR 120 191 -17 860 292 100 22 chrX 5460158 5460759 -171513381 + L2 LINE L2 2664 3312 -1 197 336 66 25 chrX 5461347 5461469 -171512671 + MIR SINE MIR 124 250 -12 883 232 43 5 chrX 5461621 5461832 -171512308 - MER20 DNA MER1_type 0 219 1 946 241 18 35 chrX 5461931 5462159 -171511981 + MER58A DNA MER1_type 1 224 0 594 273 19 46 chrX 5462159 5462375 -171511765 + MIR SINE MIR 17 226 -36 2844 128 14 2 chrX 5462948 5463371 -171510769 - MSTA LTR MaLR 0 428 1 1415 235 48 42 chrX 5463767 5464275 -171509865 + L1ME3A LINE L1 5266 5775 -395 954 237 67 19 chrX 5464510 5464822 -171509318 + L1ME3A LINE L1 5843 6169 -1 282 271 79 50 chrX 5465102 5465183 -171508957 - MIR3 SINE MIR -62 146 58 1592 177 84 26 chrX 5465183 5465528 -171508612 + MLT1A1 LTR MaLR 1 365 0 282 271 79 50 chrX 5465528 5465586 -171508554 - MIR3 SINE MIR -150 58 3 1465 235 132 41 chrX 5466406 5466946 -171507194 + MLT1E LTR MaLR 3 591 -2 379 300 31 0 chrX 5467273 5467433 -171506707 + MER103 DNA DNA 1 165 -1 357 62 0 0 chrX 5467515 5467563 -171506577 + (CA)n Simple_repeat Simple_repeat 1 48 0 1923 166 11 0 chrX 5467751 5468035 -171506105 - AluJb SINE Alu -21 291 5 24 0 0 0 chrX 5468052 5468076 -171506064 + AT_rich Low_complexity Low_complexity 1 24 0 960 174 0 36 chrX 5468082 5468249 -171505891 - FRAM SINE Alu -23 153 1 23 0 0 0 chrX 5468358 5468381 -171505759 + AT_rich Low_complexity Low_complexity 1 23 0 2763 75 0 17 chrX 5469175 5469536 -171504604 - THE1A LTR MaLR 0 355 1 12071 84 6 1 chrX 5469536 5471109 -171503031 - THE1A-int LTR MaLR 0 1580 1 2665 93 3 0 chrX 5471109 5471463 -171502677 - THE1A LTR MaLR 0 355 1 403 248 0 0 chrX 5473264 5473365 -171500775 + MER94 DNA DNA 2 102 -32 996 211 0 44 chrX 5474707 5474935 -171499205 + MER20 DNA MER1_type 2 219 0 1721 248 62 27 chrX 5475238 5475755 -171498385 + MLT1E LTR MaLR 58 592 -1 180 0 0 0 chrX 5475834 5475854 -171498286 + (GA)n Simple_repeat Simple_repeat 1 20 0 402 21 0 0 chrX 5477242 5477289 -171496851 + (CA)n Simple_repeat Simple_repeat 1 47 0 243 186 0 43 chrX 5477578 5477648 -171496492 + A-rich Low_complexity Low_complexity 3 69 0 1907 138 35 3 chrX 5478198 5478510 -171495630 - L1MC1 LINE L1 -23 6310 5989 234 220 61 45 chrX 5479538 5479670 -171494470 + L1P LINE L1 5255 5388 -763 1088 251 63 25 chrX 5479967 5480286 -171493854 + MER58B DNA MER1_type 1 331 -10 327 298 107 23 chrX 5480297 5480559 -171493581 + L1ME3 LINE L1 5650 5931 -235 189 74 0 0 chrX 5480596 5480623 -171493517 + (TA)n Simple_repeat Simple_repeat 2 28 0 928 188 0 0 chrX 5481384 5481538 -171492602 + FRAM SINE Alu 1 154 -22 265 295 52 69 chrX 5481892 5482065 -171492075 + MIR SINE MIR 8 177 -85 217 358 0 22 chrX 5482240 5482374 -171491766 + GA-rich Low_complexity Low_complexity 4 134 0 216 259 0 0 chrX 5482952 5483033 -171491107 + C-rich Low_complexity Low_complexity 1 81 0 424 292 8 36 chrX 5483114 5483370 -171490770 + CT-rich Low_complexity Low_complexity 1 248 0 1223 293 270 21 chrX 5483753 5485190 -171488950 + L2 LINE L2 1498 3304 -9 2398 204 8 37 chrX 5485652 5486167 -171487973 - MLT1D LTR MaLR 0 505 6 2262 111 3 0 chrX 5486303 5486631 -171487509 + AluSg SINE Alu 1 329 0 2231 106 3 10 chrX 5486849 5487160 -171486980 + AluSg SINE Alu 1 309 -1 221 211 39 0 chrX 5489778 5489830 -171484310 + MIR SINE MIR 196 249 -13 303 281 58 22 chrX 5490112 5490251 -171483889 + L1M4 LINE L1 3371 3514 -2632 875 196 6 39 chrX 5490271 5490450 -171483690 - AluJo SINE Alu -35 277 105 502 278 70 54 chrX 5490514 5490618 -171483522 + L1M4 LINE L1 3875 3976 -2170 213 65 0 0 chrX 5490618 5490649 -171483491 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1732 156 7 4 chrX 5490657 5490926 -171483214 - AluJo SINE Alu -37 275 6 502 278 70 54 chrX 5490926 5491309 -171482831 + L1M4 LINE L1 3982 4379 -1767 777 153 0 0 chrX 5491409 5491533 -171482607 + AluSg/x SINE Alu 181 304 -8 22 0 0 0 chrX 5491576 5491598 -171482542 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chrX 5491978 5491999 -171482141 + AT_rich Low_complexity Low_complexity 1 21 0 3167 123 74 2 chrX 5492536 5493047 -171481093 + MER34C LTR ERV1 35 582 -3 2130 112 8 36 chrX 5493561 5493917 -171480223 + L1PA16 LINE L1 5312 5657 -509 658 88 39 0 chrX 5493949 5494051 -171480089 + MER39B LTR ERV1 90 195 -458 3012 120 37 8 chrX 5494072 5494556 -171479584 + L1PA16 LINE L1 5665 6162 -4 287 323 125 15 chrX 5494558 5494951 -171479189 + L1M4 LINE L1 2329 2764 -3382 1026 166 14 54 chrX 5495062 5495285 -171478855 - MER20 DNA MER1_type -4 215 2 38 61 0 0 chrX 5495319 5495385 -171478755 + AT_rich Low_complexity Low_complexity 1 66 0 1417 228 57 54 chrX 5495543 5496003 -171478137 + LTR48B LTR ERV1 1 461 -183 604 182 91 26 chrX 5496302 5496456 -171477684 + MLT1E1 LTR MaLR 490 653 -1 400 286 63 23 chrX 5497136 5497311 -171476829 + L1MC4a LINE L1 5698 5879 -1929 2128 127 104 12 chrX 5497342 5497884 -171476256 + MER39B LTR ERV1 1 653 0 23 0 0 0 chrX 5497887 5497910 -171476230 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chrX 5497962 5497992 -171476148 + AT_rich Low_complexity Low_complexity 1 30 0 2358 175 47 2 chrX 5498366 5498772 -171475368 - MSTB LTR MaLR -2 424 1 661 150 83 0 chrX 5498883 5499016 -171475124 - L1MA9 LINE L1 -5 6307 6164 633 119 99 0 chrX 5499092 5499193 -171474947 + HY1 scRNA scRNA 1 111 -1 25 65 0 0 chrX 5499193 5499239 -171474901 + AT_rich Low_complexity Low_complexity 1 46 0 241 216 117 53 chrX 5499385 5499556 -171474584 - L2 LINE L2 -85 3228 3047 1224 164 127 55 chrX 5499940 5500294 -171473846 + MER39 LTR ERV1 336 565 0 231 36 0 0 chrX 5500485 5500513 -171473627 + (TTCC)n Simple_repeat Simple_repeat 1 28 0 1073 54 11 38 chrX 5500513 5500697 -171473443 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 1896 135 0 4 chrX 5500697 5500963 -171473177 - AluSx SINE Alu -47 265 1 27 0 0 0 chrX 5501997 5502024 -171472116 + AT_rich Low_complexity Low_complexity 1 27 0 207 195 24 0 chrX 5502244 5502285 -171471855 + (TGGA)n Simple_repeat Simple_repeat 1 42 0 188 157 0 157 chrX 5502300 5502351 -171471789 + MIR3 SINE MIR 131 173 -35 184 297 47 31 chrX 5502317 5502381 -171471759 + L3b LINE CR1 1519 1583 0 * 811 294 66 28 chrX 5502907 5503301 -171470839 - L1ME3A LINE L1 -222 5948 5540 277 125 31 0 chrX 5503383 5503447 -171470693 + L1M4 LINE L1 3155 3220 -2926 5563 121 24 20 chrX 5503464 5504418 -171469722 - Tigger3b DNA MER2_type 0 1231 274 586 165 0 0 chrX 5504416 5504507 -171469633 - Tigger3b DNA MER2_type -1129 102 12 * 5729 158 25 10 chrX 5504508 5506520 -171467620 + L1PA16 LINE L1 4126 6157 -9 381 266 26 13 chrX 5506568 5506722 -171467418 - L1M4 LINE L1 -3097 3049 2894 237 266 0 0 chrX 5506818 5506961 -171467179 + (TA)n Simple_repeat Simple_repeat 2 144 0 3275 189 132 12 chrX 5506969 5507726 -171466414 + MER21B LTR ERV1 9 862 -1 676 287 11 63 chrX 5508315 5508583 -171465557 + L1MEd LINE L1 338 591 -5528 257 266 147 28 chrX 5508614 5508723 -171465417 + L1MEd LINE L1 540 661 -5458 1612 193 40 6 chrX 5508733 5509060 -171465080 - MER58B DNA MER1_type -2 339 2 180 261 0 46 chrX 5509406 5509471 -171464669 + L2 LINE L2 2999 3060 -212 190 256 23 0 chrX 5510455 5510498 -171463642 + MIR3 SINE MIR 151 194 -14 404 280 46 84 chrX 5510812 5511158 -171462982 + L1ME1 LINE L1 20 662 -6193 283 302 69 31 chrX 5511364 5511523 -171462617 + L1ME1 LINE L1 1029 1193 -5662 3067 230 107 48 chrX 5511606 5513190 -171460950 + L1ME1 LINE L1 1226 2715 -4242 1844 91 116 11 chrX 5513190 5513465 -171460675 + AluYa8 SINE Alu 1 304 -6 3067 230 107 48 chrX 5513465 5514019 -171460121 + L1ME1 LINE L1 2715 3235 -3722 2231 119 3 0 chrX 5514019 5514331 -171459809 - AluSp SINE Alu 0 313 1 3067 230 107 48 chrX 5514331 5514706 -171459434 + L1ME1 LINE L1 3235 3586 -3371 980 233 3 110 chrX 5514706 5515041 -171459099 + AluJb SINE Alu 1 299 -3 3067 230 107 48 chrX 5515041 5515334 -171458806 + L1ME1 LINE L1 3586 4223 -2734 1011 192 64 18 chrX 5515342 5515623 -171458517 + L1ME1 LINE L1 5809 6102 -855 2418 211 32 69 chrX 5515652 5516092 -171458048 + L1ME1 LINE L1 6231 6637 -340 2317 108 6 6 chrX 5516092 5516444 -171457696 + L1PA13 LINE L1 5811 6162 -1 2418 211 32 69 chrX 5516444 5516715 -171457425 + L1ME1 LINE L1 6637 6916 -61 1155 213 20 38 chrX 5517652 5517995 -171456145 - L1MC4 LINE L1 -442 7600 7264 2321 78 3 0 chrX 5520022 5520350 -171453790 + AluSp SINE Alu 1 329 0 449 323 200 61 chrX 5520366 5522288 -171451852 + L2 LINE L2 558 2746 -568 877 185 6 39 chrX 5522330 5522508 -171451632 - MER20 DNA MER1_type -47 172 1 206 264 0 0 chrX 5523993 5524046 -171450094 - MIR SINE MIR -107 155 103 1158 221 19 11 chrX 5524067 5524330 -171449810 + MLT1E1 LTR MaLR 1 265 -389 6961 139 24 3 chrX 5524362 5525709 -171448431 + L1MC1 LINE L1 4964 6331 -2 933 236 138 18 chrX 5525753 5526035 -171448105 + MLT1E3 LTR MaLR 232 624 0 593 337 24 20 chrX 5526845 5527097 -171447043 + L3 LINE CR1 1323 1575 -2 257 281 309 0 chrX 5527820 5527998 -171446142 - L2 LINE L2 -703 2611 2379 1659 232 64 50 chrX 5528010 5528582 -171445558 - MLT1F1 LTR MaLR 0 567 1 798 294 47 60 chrX 5528582 5529031 -171445109 - L2 LINE L2 -934 2380 1938 401 252 11 19 chrX 5529036 5529231 -171444909 + L1ME3A LINE L1 5703 5882 -288 357 239 0 0 chrX 5529615 5529682 -171444458 + MIR SINE MIR 77 143 -65 226 308 0 0 chrX 5529683 5529748 -171444392 + (TATATG)n Simple_repeat Simple_repeat 4 68 0 211 337 11 11 chrX 5529711 5529800 -171444340 + (CATA)n Simple_repeat Simple_repeat 3 91 0 * 531 273 129 39 chrX 5530361 5530647 -171443493 - L2 LINE L2 -6 3307 2996 338 250 51 80 chrX 5530619 5530683 -171443457 - L2 LINE L2 -3119 195 131 * 1878 202 3 6 chrX 5530683 5531049 -171443091 - MLT1A1 LTR MaLR 0 365 1 338 250 51 80 chrX 5531049 5531160 -171442980 - L2 LINE L2 -3183 131 25 214 281 24 12 chrX 5531758 5531840 -171442300 - MIR SINE MIR 0 262 180 207 330 143 9 chrX 5531841 5531953 -171442187 - L2 LINE L2 -5 3267 3141 * 518 253 24 59 chrX 5531945 5532115 -171442025 - MIR3 SINE MIR -29 179 16 404 316 87 48 chrX 5533092 5533298 -171440842 + L3 LINE CR1 407 620 -957 1020 272 69 67 chrX 5533340 5533745 -171440395 + MLT1J2 LTR MaLR 37 442 -8 192 204 0 68 chrX 5533759 5533803 -171440337 - L2 LINE L2 -31 3241 3201 1035 239 27 19 chrX 5533912 5534172 -171439968 + MIR SINE MIR 1 262 0 227 31 31 0 chrX 5534593 5534625 -171439515 + (GA)n Simple_repeat Simple_repeat 2 34 0 865 275 48 13 chrX 5534802 5535118 -171439022 + MER46C DNA MER2_type 3 329 -9 1883 161 30 91 chrX 5535126 5535304 -171438836 + MLT1C LTR MaLR 1 188 -279 2252 106 3 3 chrX 5535304 5535615 -171438525 + AluSq SINE Alu 3 313 0 1883 161 30 91 chrX 5535615 5535933 -171438207 + MLT1C LTR MaLR 188 467 0 259 255 77 57 chrX 5538001 5538208 -171435932 - MLT1L LTR MaLR -24 487 303 307 238 0 48 chrX 5538336 5538420 -171435720 - MLT1J LTR MaLR -333 178 99 180 314 118 0 chrX 5538653 5538704 -171435436 - L2 LINE L2 -255 3017 2961 183 42 0 0 chrX 5539298 5539322 -171434818 + (CA)n Simple_repeat Simple_repeat 2 25 0 21 36 0 0 chrX 5540006 5540034 -171434106 + AT_rich Low_complexity Low_complexity 1 28 0 1422 169 0 50 chrX 5541568 5541820 -171432320 + L1M4 LINE L1 3934 4170 -1976 2470 58 7 0 chrX 5541820 5542112 -171432028 + AluSc SINE Alu 1 294 -15 1422 169 0 50 chrX 5542112 5542161 -171431979 + L1M4 LINE L1 4170 4220 -1926 215 351 37 0 chrX 5542277 5542411 -171431729 - MIR SINE MIR -73 189 51 950 156 104 16 chrX 5542471 5542663 -171431477 + MER3 DNA MER1_type 1 209 0 195 354 55 37 chrX 5543064 5543228 -171430912 + L2 LINE L2 2890 3056 -216 1023 218 5 14 chrX 5543329 5543549 -171430591 + MER58A DNA MER1_type 4 221 -3 24 32 0 0 chrX 5543588 5543619 -171430521 + AT_rich Low_complexity Low_complexity 1 31 0 358 238 113 39 chrX 5543790 5543940 -171430200 - MIR SINE MIR -67 141 5 22 80 0 0 chrX 5544104 5544154 -171429986 + AT_rich Low_complexity Low_complexity 1 50 0 985 91 51 23 chrX 5544710 5544886 -171429254 - L1MA9 LINE L1 -2 6310 6130 322 274 0 89 chrX 5545683 5545829 -171428311 + MIR SINE MIR 34 166 -96 704 276 50 50 chrX 5546589 5547060 -171427080 - MLT1G1 LTR MaLR 0 595 1 934 193 6 17 chrX 5548672 5548853 -171425287 + MER5A DNA MER1_type 10 188 -1 215 284 68 27 chrX 5549912 5549986 -171424154 + MER5B DNA MER1_type 99 175 -3 1790 165 32 0 chrX 5550314 5550593 -171423547 + AluSx SINE Alu 1 288 -24 309 26 0 0 chrX 5550594 5550632 -171423508 + (CA)n Simple_repeat Simple_repeat 2 39 0 277 310 85 16 chrX 5550662 5550791 -171423349 - MIR SINE MIR -30 232 95 271 338 25 0 chrX 5551212 5551292 -171422848 + L2 LINE L2 3191 3272 0 488 211 32 0 chrX 5551346 5551441 -171422699 - L2 LINE L2 -1 3312 3215 691 293 18 13 chrX 5552843 5553072 -171421068 - MER46C DNA MER2_type -1 337 108 234 329 52 99 chrX 5553227 5553440 -171420700 - L2 LINE L2 -154 3118 2916 328 248 69 10 chrX 5556190 5556291 -171417849 + MLT1I LTR MaLR 39 145 -264 340 192 0 140 chrX 5556454 5556610 -171417530 + MLT1G1 LTR MaLR 428 504 -1 185 405 47 0 chrX 5556718 5556866 -171417274 + L2 LINE L2 2608 2762 -552 234 143 71 0 chrX 5557308 5557320 -171416820 - MIR SINE MIR -2 260 216 242 67 0 0 chrX 5557320 5557350 -171416790 - L2 LINE L2 -23 3290 3261 22 56 0 0 chrX 5558364 5558400 -171415740 + AT_rich Low_complexity Low_complexity 1 36 0 1138 160 23 23 chrX 5559753 5559972 -171414168 - MER20 DNA MER1_type 0 219 1 222 37 0 0 chrX 5560423 5560450 -171413690 + (TTTTTG)n Simple_repeat Simple_repeat 6 32 0 1042 208 19 14 chrX 5560485 5560701 -171413439 + MER20 DNA MER1_type 1 217 -2 243 79 0 0 chrX 5560997 5561035 -171413105 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 1403 292 56 44 chrX 5562731 5563317 -171410823 + MLT1E LTR MaLR 1 593 0 3686 188 18 5 chrX 5563533 5564267 -171409873 - L1MB5 LINE L1 0 6174 5432 12847 142 12 26 chrX 5564267 5567731 -171406409 - L1MA2 LINE L1 -42 7681 4269 7098 169 12 1 chrX 5567727 5568866 -171405274 - L1MA2 LINE L1 -5713 1852 701 * 1114 175 30 3 chrX 5568859 5569281 -171404859 - L1MA2 LINE L1 -648 6949 13 * 6558 94 19 48 chrX 5569281 5570269 -171403871 + HSMAR2 DNA Mariner 343 1302 0 190 295 84 105 chrX 5570274 5570369 -171403771 - L2 LINE L2 -38 3234 3142 915 287 86 51 chrX 5570441 5571954 -171402186 + L1ME3A LINE L1 58 1657 -4653 413 266 84 58 chrX 5572491 5572837 -171401303 + L1ME3A LINE L1 2313 2667 -3462 760 248 76 14 chrX 5572891 5573101 -171401039 - MER58A DNA MER1_type -1 223 1 366 239 98 43 chrX 5573116 5573279 -171400861 + L1ME3A LINE L1 2788 2959 -3170 445 246 0 9 chrX 5573286 5573396 -171400744 + L1ME3A LINE L1 6062 6170 0 443 269 103 34 chrX 5573410 5573848 -171400292 + L1ME3A LINE L1 2955 3422 -2707 22 35 0 0 chrX 5573854 5573883 -171400257 + AT_rich Low_complexity Low_complexity 1 29 0 839 281 84 5 chrX 5574021 5574621 -171399519 + L1ME3A LINE L1 4982 5629 -516 356 263 45 57 chrX 5574719 5574966 -171399174 + L1ME3A LINE L1 5820 6063 -90 2770 112 16 66 chrX 5575601 5575669 -171398471 + MER4E LTR ERV1 1 71 -695 2539 78 0 0 chrX 5575669 5575978 -171398162 - AluY SINE Alu -2 309 1 2770 112 16 66 chrX 5575978 5576536 -171397604 + MER4E LTR ERV1 71 766 0 271 291 146 46 chrX 5578532 5578683 -171395457 - MIR SINE MIR -13 249 84 2786 137 26 12 chrX 5579462 5579887 -171394253 - MSTB1 LTR MaLR 0 432 2 377 215 271 14 chrX 5580456 5580600 -171393540 - MER5A DNA MER1_type 0 189 9 521 287 118 21 chrX 5581249 5581486 -171392654 - MIR SINE MIR -2 260 1 339 255 0 11 chrX 5581804 5581898 -171392242 - MLT1K LTR MaLR -6 582 490 350 224 75 60 chrX 5582118 5582252 -171391888 + MER104 DNA Tc2 1 136 -44 355 268 49 32 chrX 5582466 5582589 -171391551 - L2 LINE L2 0 3272 3148 496 237 42 17 chrX 5585063 5585181 -171388959 + MIR SINE MIR 1 121 -141 526 103 0 39 chrX 5585181 5585259 -171388881 + LTR32 LTR ERVL 13 87 -384 * 2669 166 29 5 chrX 5585240 5585686 -171388454 + LTR32 LTR ERVL 15 471 0 189 0 0 0 chrX 5586240 5586261 -171387879 + (A)n Simple_repeat Simple_repeat 1 21 0 207 0 0 0 chrX 5586261 5586284 -171387856 + (CA)n Simple_repeat Simple_repeat 2 24 0 786 129 0 0 chrX 5586790 5586891 -171387249 + FLAM_A SINE Alu 22 122 -20 261 0 0 0 chrX 5587467 5587496 -171386644 + (ATG)n Simple_repeat Simple_repeat 2 30 0 2006 192 6 3 chrX 5587502 5587851 -171386289 - MLT1A1 LTR MaLR -15 350 1 2358 171 47 64 chrX 5588792 5589306 -171384834 + MLT1D LTR MaLR 1 505 0 296 211 33 125 chrX 5589548 5589575 -171384565 - MER5B DNA MER1_type -37 141 113 2087 73 59 4 chrX 5589575 5589870 -171384270 + AluY SINE Alu 1 311 0 296 211 33 125 chrX 5589870 5589994 -171384146 - MER5B DNA MER1_type -65 113 4 215 301 12 12 chrX 5590060 5590143 -171383997 + MIR3 SINE MIR 123 205 -3 949 205 82 45 chrX 5591162 5591430 -171382710 + LTR50 LTR ERVL 1 278 -517 898 212 0 22 chrX 5591492 5591671 -171382469 + MLT1A1 LTR MaLR 1 175 -190 312 244 39 13 chrX 5591709 5591787 -171382353 + MLT1A1 LTR MaLR 167 246 -119 * 585 139 5 9 chrX 5591780 5591877 -171382263 - MLT1A1 LTR MaLR -26 341 253 238 204 0 0 chrX 5591872 5591916 -171382224 + MLT1A1 LTR MaLR 322 365 0 * 568 216 82 69 chrX 5591917 5592148 -171381992 + LTR50 LTR ERVL 526 759 -36 4730 123 44 20 chrX 5594159 5594864 -171379276 + MER72 LTR ERV1 1 722 0 1467 120 113 22 chrX 5595304 5595711 -171378429 + LTR54 LTR ERV1 1 510 0 188 333 67 0 chrX 5595851 5595926 -171378214 - MER5A DNA MER1_type -73 116 37 * 266 310 81 0 chrX 5595861 5595948 -171378192 + MER5A DNA MER1_type 96 189 0 885 191 85 50 chrX 5596180 5596462 -171377678 + LTR37A LTR ERV1 3 294 -132 261 0 0 0 chrX 5596464 5596493 -171377647 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1424 150 4 34 chrX 5596507 5596741 -171377399 - AluJo SINE Alu -83 229 3 649 131 29 36 chrX 5596751 5596888 -171377252 + LTR37A LTR ERV1 291 426 0 2072 49 46 11 chrX 5598248 5598511 -171375629 - AluY SINE Alu -1 310 39 216 0 0 0 chrX 5598511 5598535 -171375605 + (CATA)n Simple_repeat Simple_repeat 4 27 0 790 185 0 22 chrX 5598538 5598673 -171375467 - FLAM_A SINE Alu -1 132 1 2046 119 53 87 chrX 5598703 5599081 -171375059 + MLT1A1 LTR MaLR 1 365 0 1206 177 22 26 chrX 5599994 5600226 -171373914 + MER92B LTR ERV1 34 264 -372 1111 169 86 79 chrX 5600259 5600537 -171373603 + MER92B LTR ERV1 357 636 0 669 236 91 0 chrX 5601034 5601199 -171372941 - MER5A DNA MER1_type 0 189 10 298 157 0 86 chrX 5601883 5601953 -171372187 + L1MB7 LINE L1 6087 6150 -34 1885 155 0 7 chrX 5601970 5602261 -171371879 - AluJb SINE Alu -17 295 7 5754 97 10 4 chrX 5602261 5602929 -171371211 - L1PA13 LINE L1 -5 6158 5483 2330 118 0 3 chrX 5602929 5603243 -171370897 - AluSq SINE Alu 0 313 1 5754 97 10 4 chrX 5603243 5603371 -171370769 - L1PA13 LINE L1 -680 5483 5357 270 105 193 0 chrX 5603361 5603418 -171370722 + L1MB7 LINE L1 6117 6184 0 * 1371 166 43 22 chrX 5603446 5603602 -171370538 + L1MA9 LINE L1 5995 6146 -166 180 0 0 0 chrX 5603602 5603622 -171370518 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 1371 166 43 22 chrX 5603622 5603651 -171370489 + L1MA9 LINE L1 6146 6173 -139 2221 137 24 34 chrX 5603651 5604030 -171370110 - THE1C LTR MaLR 0 375 1 1371 166 43 22 chrX 5604030 5604120 -171370020 + L1MA9 LINE L1 6173 6277 -35 226 211 0 0 chrX 5604425 5604463 -171369677 + (CA)n Simple_repeat Simple_repeat 2 39 0 26 0 0 0 chrX 5605183 5605209 -171368931 + AT_rich Low_complexity Low_complexity 1 26 0 1696 202 65 28 chrX 5605471 5605823 -171368317 - MLT1A1 LTR MaLR 0 365 1 2413 78 3 13 chrX 5605908 5606214 -171367926 - AluSp SINE Alu -10 303 1 229 286 214 10 chrX 5606531 5606629 -171367511 - L2 LINE L2 -5 3267 3150 407 205 26 0 chrX 5606741 5606819 -171367321 - MER46C DNA MER2_type -1 337 258 1096 243 140 34 chrX 5606832 5606948 -171367192 - MLT1I LTR MaLR 0 409 307 3273 173 12 12 chrX 5606948 5607463 -171366677 - MLT2B2 LTR ERVL 0 515 1 1096 243 140 34 chrX 5607463 5607704 -171366436 - MLT1I LTR MaLR -102 307 14 538 271 59 25 chrX 5607718 5607954 -171366186 - MER46C DNA MER2_type -94 244 1 638 212 33 54 chrX 5608076 5608133 -171366007 + MIR SINE MIR 45 102 -160 2668 157 49 2 chrX 5608133 5608540 -171365600 + MSTB LTR MaLR 1 426 0 638 212 33 54 chrX 5608540 5608666 -171365474 + MIR SINE MIR 102 224 -38 698 259 24 0 chrX 5608882 5609052 -171365088 - MER5B DNA MER1_type -4 174 1 375 236 99 43 chrX 5609734 5609895 -171364245 + HAL1 LINE L1 5 174 -2333 804 185 0 101 chrX 5609912 5610101 -171364039 + MER58B DNA MER1_type 172 341 0 505 248 8 8 chrX 5610111 5610232 -171363908 + HAL1 LINE L1 268 388 -2119 1691 171 27 24 chrX 5610299 5610627 -171363513 + MSTD LTR MaLR 17 345 -51 21 36 0 0 chrX 5610627 5610655 -171363485 + AT_rich Low_complexity Low_complexity 1 28 0 1070 172 32 93 chrX 5611047 5611326 -171362814 + L1MB5 LINE L1 5913 6174 0 944 106 0 57 chrX 5611645 5611786 -171362354 + FLAM_A SINE Alu 1 133 0 44127 36 21 2 chrX 5612704 5618930 -171355210 + L1HS LINE L1 1 6155 0 486 314 0 0 chrX 5619211 5619329 -171354811 - L2 LINE L2 -2 3270 3153 432 214 298 35 chrX 5620978 5621267 -171352873 - L2 LINE L2 -14 3299 2935 202 222 0 22 chrX 5622157 5622202 -171351938 - L2 LINE L2 0 3272 3229 1085 268 104 35 chrX 5622271 5622779 -171351361 + MLT1H1 LTR MaLR 6 548 -7 920 267 123 35 chrX 5623332 5623755 -171350385 - MLT1C LTR MaLR -7 460 1 2449 91 0 0 chrX 5623884 5624193 -171349947 - AluSx SINE Alu -3 309 1 266 303 42 35 chrX 5624194 5624336 -171349804 + L2 LINE L2 2942 3084 -188 21601 165 44 11 chrX 5624750 5625451 -171348689 - L1PA13 LINE L1 0 6814 6138 2541 97 58 17 chrX 5625451 5625811 -171348329 + THE1C LTR MaLR 1 375 0 21601 165 44 11 chrX 5625811 5631515 -171342625 - L1PA13 LINE L1 -676 6138 132 2721 94 22 2 chrX 5631516 5631922 -171342218 + MSTA LTR MaLR 15 428 0 272 271 31 10 chrX 5631922 5632018 -171342122 + MLT1J1 LTR MaLR 83 180 -266 684 264 65 55 chrX 5632181 5632473 -171341667 - MLT1I LTR MaLR 0 409 115 2031 158 31 23 chrX 5632509 5632896 -171341244 + MLT1B LTR MaLR 1 390 0 187 311 243 0 chrX 5633327 5633430 -171340710 + MIR SINE MIR 129 256 -6 572 242 25 13 chrX 5634907 5635064 -171339076 + MER20 DNA MER1_type 1 159 -60 2338 96 7 0 chrX 5635581 5635883 -171338257 - AluSx SINE Alu -8 304 1 4952 130 19 5 chrX 5636304 5637141 -171336999 - L1PA16 LINE L1 -1 6165 5317 423 337 163 22 chrX 5637644 5638205 -171335935 + L2 LINE L2 2460 3086 -186 840 265 51 9 chrX 5638245 5638460 -171335680 - MIR SINE MIR -8 254 31 1081 154 72 0 chrX 5638481 5638676 -171335464 + MER3 DNA MER1_type 1 209 0 225 270 111 0 chrX 5639654 5639717 -171334423 + Charlie8 DNA MER1_type 1 70 -2347 236 186 0 27 chrX 5639767 5639850 -171334290 + Charlie8 DNA MER1_type 1347 2415 -2 204 40 0 0 chrX 5639899 5639924 -171334216 + (A)n Simple_repeat Simple_repeat 1 25 0 313 281 131 44 chrX 5640734 5640894 -171333246 - MER5B DNA MER1_type 0 178 5 284 276 46 79 chrX 5641120 5641272 -171332868 + MIR SINE MIR 20 166 -96 1080 178 89 0 chrX 5642963 5643165 -171330975 + MER58A DNA MER1_type 1 220 -4 1854 159 21 7 chrX 5643490 5643780 -171330360 + AluSx SINE Alu 1 294 -18 3469 235 57 13 chrX 5644062 5645336 -171328804 + L1M4 LINE L1 2512 3842 -2304 261 273 77 16 chrX 5645350 5645533 -171328607 + L1M4 LINE L1 16 209 -6333 445 300 114 71 chrX 5645804 5646154 -171327986 + L1M4 LINE L1 542 906 -5636 274 301 0 12 chrX 5646159 5646242 -171327898 + GA-rich Low_complexity Low_complexity 1 82 0 544 154 0 108 chrX 5646371 5646501 -171327639 - L1ME LINE L1 -621 5543 5428 186 224 0 41 chrX 5646519 5646568 -171327572 + L2 LINE L2 3262 3308 -5 2260 129 0 0 chrX 5646624 5646926 -171327214 + AluSx SINE Alu 1 302 -10 615 325 48 0 chrX 5647227 5647436 -171326704 - MIR SINE MIR -31 231 13 30 27 0 0 chrX 5647878 5647915 -171326225 + AT_rich Low_complexity Low_complexity 1 37 0 1266 160 33 0 chrX 5650510 5650722 -171323418 - MER20 DNA MER1_type 0 219 1 2239 34 4 0 chrX 5651431 5651695 -171322445 + AluY SINE Alu 41 305 -6 199 182 0 159 chrX 5652239 5652327 -171321813 - L2 LINE L2 -69 3244 3171 1375 114 0 92 chrX 5652932 5653115 -171321025 + MER2 DNA MER2_type 20 172 -173 1804 158 7 3 chrX 5653115 5653407 -171320733 + AluJb SINE Alu 1 293 -19 1375 114 0 92 chrX 5653407 5653495 -171320645 + MER2 DNA MER2_type 172 266 -79 962 128 7 0 chrX 5653497 5653645 -171320495 - AluSp/q SINE Alu -8 305 157 2040 187 94 73 chrX 5653645 5654410 -171319730 - L1M4 LINE L1 -1313 4833 4053 1131 147 1 5 chrX 5654475 5654696 -171319444 - L1M3 LINE L1 -524 5656 5479 306 260 52 0 chrX 5655550 5655627 -171318513 - L2 LINE L2 -2 3311 3231 570 153 90 45 chrX 5655949 5656126 -171318014 - MER53 DNA DNA -4 185 1 419 137 14 0 chrX 5656223 5656296 -171317844 - LTR16C LTR ERVL -1 490 417 277 361 33 0 chrX 5656360 5656482 -171317658 - LTR16C LTR ERVL -212 279 154 337 321 55 0 chrX 5656669 5656778 -171317362 - MIR3 SINE MIR -7 201 87 251 254 17 0 chrX 5657401 5657460 -171316680 + L2 LINE L2 3208 3267 -5 974 139 11 0 chrX 5657965 5658145 -171315995 - L1MA7 LINE L1 -2 6289 6108 308 283 40 20 chrX 5658491 5658590 -171315550 - MIR3 SINE MIR -17 191 91 408 139 14 14 chrX 5658593 5658665 -171315475 - MER58B DNA MER1_type -1 340 269 263 374 176 4 chrX 5658822 5659060 -171315080 - L2 LINE L2 -217 3096 2818 1232 254 100 17 chrX 5659138 5659606 -171314534 + Charlie7 DNA MER1_type 44 550 -2062 226 208 195 0 chrX 5659702 5659779 -171314361 + MER112 DNA MER1_type 73 164 -96 918 216 39 26 chrX 5659849 5660159 -171313981 + Charlie7 DNA MER1_type 548 861 -1751 806 132 66 60 chrX 5660467 5660649 -171313491 + LTR54 LTR ERV1 1 183 -327 883 183 28 5 chrX 5660666 5660879 -171313261 + LTR54 LTR ERV1 293 510 0 450 353 63 9 chrX 5661104 5661325 -171312815 + MIR SINE MIR 15 247 -15 3067 27 0 64 chrX 5663412 5663820 -171310320 + L1PA4 LINE L1 5770 6151 -4 198 0 0 0 chrX 5663836 5663858 -171310282 + (A)n Simple_repeat Simple_repeat 1 22 0 204 40 0 0 chrX 5663962 5663987 -171310153 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 316 335 138 12 chrX 5664061 5664315 -171309825 - LTR16B LTR ERVL -177 287 2 2699 107 70 7 chrX 5664612 5665015 -171309125 + MSTA LTR MaLR 1 428 0 27 49 0 0 chrX 5665787 5665828 -171308312 + AT_rich Low_complexity Low_complexity 1 41 0 248 0 31 0 chrX 5667064 5667096 -171307044 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 23 0 0 0 chrX 5667637 5667660 -171306480 + AT_rich Low_complexity Low_complexity 1 23 0 28 29 0 0 chrX 5668034 5668069 -171306071 + AT_rich Low_complexity Low_complexity 1 35 0 13086 163 17 12 chrX 5668107 5670535 -171303605 - L1PA13 LINE L1 -5 6158 3744 1904 145 83 14 chrX 5670535 5670886 -171303254 + THE1C LTR MaLR 1 375 0 10314 99 30 48 chrX 5670886 5672495 -171301645 + THE1C-int LTR MaLR 1 1580 0 2110 133 50 8 chrX 5672495 5672855 -171301285 + THE1C LTR MaLR 1 375 0 13086 163 17 12 chrX 5672855 5673691 -171300449 - L1PA13 LINE L1 -2418 3745 2870 3551 207 59 81 chrX 5673793 5674551 -171299589 + L1ME1 LINE L1 4175 4948 -1218 185 0 40 0 chrX 5674551 5674576 -171299564 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 3551 207 59 81 chrX 5674576 5675794 -171298346 + L1ME1 LINE L1 4948 6099 -67 218 291 18 0 chrX 5676690 5676745 -171297395 + MIR3 SINE MIR 135 190 -18 247 303 134 25 chrX 5677621 5677740 -171296400 + L2 LINE L2 3136 3267 -5 420 211 119 9 chrX 5677790 5677899 -171296241 + MIR SINE MIR 115 235 -27 229 200 0 0 chrX 5677869 5677904 -171296236 + L2 LINE L2 3210 3244 -28 * 700 274 116 34 chrX 5678058 5678412 -171295728 - MER68 LTR ERV1 0 562 180 272 210 16 0 chrX 5678468 5678530 -171295610 - MER68 LTR ERV1 -499 63 1 233 247 22 45 chrX 5678625 5678714 -171295426 + GA-rich Low_complexity Low_complexity 3 89 0 2763 184 24 11 chrX 5679378 5679999 -171294141 - L1P LINE L1 -3195 2951 2323 377 254 0 9 chrX 5680008 5680118 -171294022 + L1M4 LINE L1 2685 2793 -3353 921 138 0 0 chrX 5680120 5680258 -171293882 - AluJb SINE Alu 0 312 175 22 35 0 0 chrX 5680625 5680654 -171293486 + AT_rich Low_complexity Low_complexity 1 29 0 412 246 87 61 chrX 5681274 5681538 -171292602 + L1M4b LINE L1 5 275 -6584 5771 182 25 23 chrX 5681614 5683757 -171290383 - L1MB2 LINE L1 -7 6164 4019 234 209 60 0 chrX 5684262 5684329 -171289811 + GA-rich Low_complexity Low_complexity 3 73 0 1517 218 45 102 chrX 5684437 5684497 -171289643 + L1M4b LINE L1 1292 1354 -5605 1698 194 28 14 chrX 5684497 5684857 -171289283 + MLT1A1 LTR MaLR 1 365 0 1517 218 45 102 chrX 5684857 5685802 -171288338 + L1M4b LINE L1 1354 2231 -4728 2285 101 0 0 chrX 5685805 5686136 -171288004 + AluY SINE Alu 1 331 0 413 269 192 0 chrX 5686153 5686361 -171287779 + L1ME1 LINE L1 5914 6161 -5 215 346 68 45 chrX 5686494 5686627 -171287513 + L2 LINE L2 3121 3256 -16 893 236 116 95 chrX 5686776 5687335 -171286805 - MLT1L LTR MaLR -44 571 1 1710 176 10 10 chrX 5687940 5688241 -171285899 + AluJo SINE Alu 1 301 -11 588 302 80 9 chrX 5688960 5689185 -171284955 + L2 LINE L2 2418 2658 -656 902 188 29 86 chrX 5689364 5689796 -171284344 + MLT1A2 LTR MaLR 2 374 0 5936 81 19 17 chrX 5689931 5690913 -171283227 + L1PB2 LINE L1 5164 6147 -4 16419 26 0 0 chrX 5692035 5694750 -171279390 + L1PA3 LINE L1 3441 6155 0 26 30 0 0 chrX 5694750 5694783 -171279357 + AT_rich Low_complexity Low_complexity 1 33 0 247 236 16 87 chrX 5694817 5694944 -171279196 - L1M4b LINE L1 -5477 1382 1265 5799 103 4 52 chrX 5695118 5696132 -171278008 - L1P LINE L1 -1518 4628 3664 484 246 35 123 chrX 5696201 5696399 -171277741 - L1M4 LINE L1 -4424 2401 2187 1313 228 54 7 chrX 5696399 5696697 -171277443 - AluJo SINE Alu 0 312 1 484 246 35 123 chrX 5696697 5696821 -171277319 - L1M4 LINE L1 -4638 2187 2130 2004 137 0 44 chrX 5696821 5697142 -171276998 - AluSx SINE Alu -5 307 1 484 246 35 123 chrX 5697142 5697282 -171276858 - L1M4 LINE L1 -4695 2130 1979 335 241 0 0 chrX 5697283 5697366 -171276774 + MLT2B2 LTR ERVL 1 83 -432 235 146 0 0 chrX 5697358 5697399 -171276741 + MLT2B1 LTR ERVL 473 513 -7 * 1177 258 90 16 chrX 5697402 5698061 -171276079 - L1M4 LINE L1 -4815 1831 1112 2253 107 65 0 chrX 5698542 5698880 -171275260 + MER46B DNA MER2_type 2 236 0 525 229 34 0 chrX 5699098 5699216 -171274924 - L2 LINE L2 -4 3309 3188 291 288 111 26 chrX 5699207 5699360 -171274780 - L2 LINE L2 -936 2378 2213 * 325 230 171 49 chrX 5700164 5700451 -171273689 + L1 LINE L1 3073 3394 -2752 38 0 0 0 chrX 5700510 5700548 -171273592 + AT_rich Low_complexity Low_complexity 1 38 0 7000 37 1 0 chrX 5700548 5702039 -171272101 - L1PA3 LINE L1 -3 6152 4676 588 212 19 9 chrX 5702066 5702283 -171271857 + C-rich Low_complexity Low_complexity 1 219 0 3615 73 2 0 chrX 5702420 5702942 -171271198 + L1P LINE L1 954 1476 -4670 799 238 22 9 chrX 5703730 5703953 -171270187 + L2 LINE L2 2404 2629 -685 754 137 7 0 chrX 5703969 5704108 -171270032 - L1MA7 LINE L1 -2 6289 6150 239 222 0 0 chrX 5704145 5704190 -171269950 - MER5A DNA MER1_type -136 53 9 855 278 111 62 chrX 5704326 5704987 -171269153 + L2 LINE L2 2632 3313 0 574 236 48 24 chrX 5705092 5705300 -171268840 - L1MC5 LINE L1 -51 7910 7698 727 166 38 55 chrX 5705317 5705489 -171268651 - L1ME2 LINE L1 -158 6008 5840 536 204 154 49 chrX 5705674 5705836 -171268304 + MER5A DNA MER1_type 9 187 -2 2133 182 0 11 chrX 5705964 5706333 -171267807 - MLT1A1 LTR MaLR 0 365 1 972 189 18 28 chrX 5707296 5707513 -171266627 + MER20 DNA MER1_type 1 215 -4 411 218 20 30 chrX 5707822 5707923 -171266217 + MER5A DNA MER1_type 15 114 -75 606 233 80 6 chrX 5707983 5708146 -171265994 - MER5B DNA MER1_type -3 175 1 485 289 82 6 chrX 5708220 5708379 -171265761 + MIR SINE MIR 2 172 -90 765 230 43 95 chrX 5708390 5708759 -171265381 - MLT2C1 LTR ERVL -4 393 44 * 776 169 5 65 chrX 5708590 5708774 -171265366 - MLT1E3 LTR MaLR -402 222 50 352 286 20 27 chrX 5708775 5708922 -171265218 - MLT2F LTR ERVL -517 146 1 210 333 13 0 chrX 5708922 5709000 -171265140 + MIR SINE MIR 181 259 -3 1315 193 94 12 chrX 5709347 5709678 -171264462 + L1MD3 LINE L1 7635 7992 -3 214 227 45 15 chrX 5710606 5710672 -171263468 + (CATATA)n Simple_repeat Simple_repeat 2 69 0 461 194 82 0 chrX 5710776 5710874 -171263266 - L2 LINE L2 0 3313 3208 657 239 6 28 chrX 5710889 5711065 -171263075 - MIR SINE MIR -2 260 89 638 259 20 73 chrX 5711963 5712210 -171261930 + MIR SINE MIR 15 248 -14 525 192 30 0 chrX 5712366 5712465 -171261675 - MER5A DNA MER1_type -77 112 11 269 380 9 9 chrX 5712483 5712591 -171261549 + MIR3 SINE MIR 76 183 -25 731 257 103 94 chrX 5712598 5713142 -171260998 + MLT1H LTR MaLR 1 549 0 333 175 0 0 chrX 5713346 5713403 -171260737 - Tigger5 DNA MER2_type -3 2320 2264 * 372 210 12 12 chrX 5713399 5713480 -171260660 + Tigger5 DNA MER2_type 2242 2322 -1 822 120 6 84 chrX 5713726 5713893 -171260247 + Tigger1 DNA MER2_type 1 154 -2264 * 1076 140 45 18 chrX 5713887 5714108 -171260032 + Tigger1 DNA MER2_type 2192 2418 0 2465 122 3 31 chrX 5715073 5715457 -171258683 - MER83C LTR ERV1 0 373 1 501 259 229 34 chrX 5715662 5715898 -171258242 - L2 LINE L2 -111 3202 2921 24 0 0 0 chrX 5715929 5715953 -171258187 + AT_rich Low_complexity Low_complexity 1 24 0 3027 126 22 38 chrX 5717234 5717782 -171256358 - L1MB2 LINE L1 -4 6167 5629 31 44 0 0 chrX 5718005 5718050 -171256090 + AT_rich Low_complexity Low_complexity 1 45 0 212 194 48 0 chrX 5718158 5718220 -171255920 + (TATATG)n Simple_repeat Simple_repeat 2 66 0 195 184 0 0 chrX 5718252 5718290 -171255850 + (CATATA)n Simple_repeat Simple_repeat 1 38 0 189 331 86 60 chrX 5719249 5719400 -171254740 + L3 LINE CR1 1224 1378 -199 607 249 49 53 chrX 5719801 5720146 -171253994 - MLT1I LTR MaLR -1 408 67 5246 125 29 14 chrX 5720360 5721214 -171252926 + L1MC1 LINE L1 5461 6327 -6 305 315 19 19 chrX 5721233 5721341 -171252799 + L3 LINE CR1 1469 1576 -1 351 390 58 25 chrX 5721361 5721635 -171252505 - L3 LINE CR1 -6 1571 1289 294 339 204 17 chrX 5722045 5722644 -171251496 + L2 LINE L2 1912 2622 -692 377 326 27 62 chrX 5722699 5722923 -171251217 - HAL1 LINE L1 -61 2446 2231 23 54 0 0 chrX 5723245 5723282 -171250858 + AT_rich Low_complexity Low_complexity 1 37 0 939 100 0 0 chrX 5724315 5724445 -171249695 - L1PA16 LINE L1 -10 6156 6027 1128 203 11 89 chrX 5724624 5724974 -171249166 + MLT2B1 LTR ERVL 1 323 -197 305 299 27 54 chrX 5725166 5725390 -171248750 + MER102b DNA MER1_type 124 341 0 286 261 36 18 chrX 5725448 5725559 -171248581 - MLT1J LTR MaLR 0 511 399 409 305 54 69 chrX 5725591 5726014 -171248126 + MLT1J LTR MaLR 1 417 -94 262 126 78 0 chrX 5726723 5726826 -171247314 + (TA)n Simple_repeat Simple_repeat 2 112 0 892 211 29 61 chrX 5728020 5728300 -171245840 - L1MD2 LINE L1 -17 6342 6072 228 184 79 53 chrX 5728340 5728416 -171245724 - MIR SINE MIR -63 199 122 432 0 0 0 chrX 5728650 5728698 -171245442 + (CA)n Simple_repeat Simple_repeat 1 48 0 731 292 142 0 chrX 5729176 5729281 -171244859 + L2 LINE L2 2046 2135 -1179 1115 198 28 0 chrX 5729281 5729493 -171244647 + MER20 DNA MER1_type 2 219 0 731 292 142 0 chrX 5729493 5729719 -171244421 + L2 LINE L2 2135 2424 -890 1698 217 9 0 chrX 5730002 5730338 -171243802 + MER58B DNA MER1_type 1 339 -2 242 304 230 6 chrX 5730396 5730557 -171243583 + MIR SINE MIR 58 254 -8 33 0 0 0 chrX 5730567 5730600 -171243540 + AT_rich Low_complexity Low_complexity 1 33 0 1689 211 17 42 chrX 5732071 5732473 -171241667 - MSTD LTR MaLR -2 394 3 628 294 25 0 chrX 5732476 5732678 -171241462 - LTR16C LTR ERVL -9 482 276 546 219 0 47 chrX 5732678 5732806 -171241334 - MER58A DNA MER1_type 0 224 103 1209 115 25 10 chrX 5732809 5733009 -171241131 + MER2 DNA MER2_type 4 206 -139 21 36 0 0 chrX 5733016 5733044 -171241096 + AT_rich Low_complexity Low_complexity 1 28 0 260 163 0 0 chrX 5733089 5733132 -171241008 + MER2 DNA MER2_type 301 343 -2 308 250 141 0 chrX 5733133 5733225 -171240915 - MER58A DNA MER1_type -2 105 1 605 187 159 0 chrX 5733233 5733415 -171240725 - MER5C DNA MER1_type -1 323 113 551 291 50 6 chrX 5733420 5733599 -171240541 - MIR SINE MIR -55 207 21 25 65 0 0 chrX 5733882 5733928 -171240212 + AT_rich Low_complexity Low_complexity 1 46 0 1072 207 55 28 chrX 5733938 5734283 -171239857 + MSTC LTR MaLR 1 428 0 2343 90 30 0 chrX 5734562 5734862 -171239278 - AluSg SINE Alu -1 309 1 2172 159 22 84 chrX 5735157 5735692 -171238448 - MLT1D LTR MaLR 0 505 4 578 121 20 0 chrX 5736039 5736138 -171238002 + MER89 LTR ERV1 459 559 0 2808 79 3 8 chrX 5736659 5737025 -171237115 + THE1B LTR MaLR 1 364 0 303 301 88 37 chrX 5737285 5737345 -171236795 - MIR3 SINE MIR -1 207 152 673 153 68 74 chrX 5737345 5737521 -171236619 + MER5B DNA MER1_type 4 178 0 303 301 88 37 chrX 5737521 5737596 -171236544 - MIR3 SINE MIR -56 152 65 362 198 198 64 chrX 5737663 5737820 -171236320 - MER5B DNA MER1_type 0 178 1 2116 138 0 0 chrX 5737842 5738133 -171236007 + AluSx SINE Alu 1 291 -21 2546 188 90 2 chrX 5738652 5739173 -171234967 - MLT1F1 LTR MaLR 0 567 1 2564 23 0 0 chrX 5739235 5739534 -171234606 + L1PA2 LINE L1 5857 6155 0 422 331 58 0 chrX 5740022 5740194 -171233946 + MIR SINE MIR 17 198 -64 25 31 0 0 chrX 5740735 5740767 -171233373 + AT_rich Low_complexity Low_complexity 1 32 0 799 326 61 22 chrX 5741590 5741952 -171232188 - L2 LINE L2 -639 2675 2300 2183 121 14 93 chrX 5742343 5742772 -171231368 + MLT2C1 LTR ERVL 1 395 -2 405 0 0 0 chrX 5742943 5742988 -171231152 + (GA)n Simple_repeat Simple_repeat 2 46 0 2824 209 37 35 chrX 5743515 5744596 -171229544 + L1ME2 LINE L1 4997 6074 -90 1842 172 0 3 chrX 5745473 5745775 -171228365 - AluJo SINE Alu -11 301 1 25 0 0 0 chrX 5746342 5746367 -171227773 + AT_rich Low_complexity Low_complexity 1 25 0 203 100 0 50 chrX 5747147 5747187 -171226953 + (CATATA)n Simple_repeat Simple_repeat 2 39 0 2099 133 3 13 chrX 5747217 5747519 -171226621 - AluSx SINE Alu -13 299 1 1066 196 48 0 chrX 5747776 5747985 -171226155 + MER20 DNA MER1_type 1 219 0 390 293 98 10 chrX 5748552 5748745 -171225395 - MIR SINE MIR -45 217 1 237 379 46 0 chrX 5749627 5749714 -171224426 + MIR SINE MIR 33 123 -85 500 236 70 70 chrX 5750098 5750357 -171223783 - ORSL DNA AcHobo 0 275 17 207 263 197 26 chrX 5750387 5750539 -171223601 + MIR SINE MIR 28 205 -57 1159 90 56 0 chrX 5751042 5751220 -171222920 - L1M2 LINE L1 -540 5751 5564 2683 116 34 27 chrX 5751221 5751695 -171222445 + L1MA7 LINE L1 5815 6291 0 237 250 57 11 chrX 5752366 5752454 -171221686 + L1ME4a LINE L1 5994 6085 -36 224 245 38 0 chrX 5753178 5753231 -171220909 + L2 LINE L2 3259 3313 0 257 240 74 80 chrX 5753326 5753501 -171220639 + L1ME LINE L1 5601 5774 -347 461 162 86 9 chrX 5753657 5753762 -171220378 + L1MC5 LINE L1 7035 7147 -814 1551 222 189 2 chrX 5753790 5754241 -171219899 - MLT1F LTR MaLR -3 539 5 979 207 31 105 chrX 5754247 5754705 -171219435 + L1MC5 LINE L1 7168 7591 -370 2064 142 7 0 chrX 5755087 5755382 -171218758 + AluSx SINE Alu 1 297 -15 2209 103 0 3 chrX 5755638 5755928 -171218212 - AluSq SINE Alu -24 289 1 2404 146 41 56 chrX 5755932 5756465 -171217675 - L1MB7 LINE L1 -76 6108 5584 1682 157 80 17 chrX 5756477 5756828 -171217312 + THE1C LTR MaLR 1 373 -2 23 54 0 0 chrX 5756828 5756865 -171217275 + AT_rich Low_complexity Low_complexity 1 37 0 349 183 9 122 chrX 5757096 5757211 -171216929 + L1MC5 LINE L1 7755 7856 -105 2226 99 16 0 chrX 5758113 5758416 -171215724 + AluSg1 SINE Alu 2 309 0 972 200 10 10 chrX 5759224 5759429 -171214711 - LTR48B LTR ERV1 0 644 440 1607 183 159 7 chrX 5760085 5760500 -171213640 - LTR48 LTR ERV1 -309 478 1 1686 156 87 10 chrX 5761616 5761905 -171212235 - AluJb SINE Alu -1 311 1 1092 174 1 4 chrX 5761960 5762203 -171211937 + MER58A DNA MER1_type 1 219 -5 432 234 193 27 chrX 5762336 5762751 -171211389 + MLT1H LTR MaLR 12 545 -10 22 0 0 0 chrX 5763368 5763390 -171210750 + AT_rich Low_complexity Low_complexity 1 22 0 3441 146 38 5 chrX 5763415 5764045 -171210095 + L1MB2 LINE L1 5520 6170 -1 1041 211 19 5 chrX 5764584 5764793 -171209347 - MER58A DNA MER1_type -3 221 10 23 0 0 0 chrX 5765008 5765031 -171209109 + AT_rich Low_complexity Low_complexity 1 23 0 27 0 0 0 chrX 5765385 5765412 -171208728 + AT_rich Low_complexity Low_complexity 1 27 0 222 221 116 116 chrX 5765644 5765739 -171208401 + MER5A DNA MER1_type 95 189 0 357 287 11 0 chrX 5765821 5765915 -171208225 + L1MC/D LINE L1 5519 5613 -508 21 0 0 0 chrX 5766466 5766487 -171207653 + AT_rich Low_complexity Low_complexity 1 21 0 226 301 30 53 chrX 5767397 5767530 -171206610 + L1MC/D LINE L1 5682 5811 -1997 226 203 14 14 chrX 5767568 5767642 -171206498 + (TA)n Simple_repeat Simple_repeat 2 75 0 708 211 175 119 chrX 5768164 5768643 -171205497 - MLT1H LTR MaLR -8 541 36 1357 164 29 21 chrX 5769674 5769689 -171204451 - L1MB7 LINE L1 -21 6163 6150 2674 130 34 0 chrX 5769689 5770103 -171204037 - MSTA LTR MaLR 0 428 1 1357 164 29 21 chrX 5770103 5770368 -171203772 - L1MB7 LINE L1 -34 6150 5881 610 224 36 24 chrX 5770865 5771030 -171203110 - MER69A DNA AcHobo -10 167 1 2182 193 47 26 chrX 5771105 5771598 -171202542 + MLT1D LTR MaLR 1 503 -2 200 271 0 0 chrX 5771800 5771848 -171202292 + GA-rich Low_complexity Low_complexity 1 48 0 1536 93 14 19 chrX 5772890 5773105 -171201035 + AluSq SINE Alu 1 214 -99 929 186 50 25 chrX 5773105 5773304 -171200836 + AluJo SINE Alu 86 289 -23 518 67 13 0 chrX 5773322 5773397 -171200743 + (GGAA)n Simple_repeat Simple_repeat 1 76 0 288 273 45 53 chrX 5773405 5773537 -171200603 + L2 LINE L2 2155 2285 -1029 843 231 77 15 chrX 5773600 5773630 -171200510 + L2 LINE L2 2625 2652 -661 2001 141 13 7 chrX 5773630 5773815 -171200325 - AluJo SINE Alu -5 307 118 207 0 0 0 chrX 5773815 5773838 -171200302 + (TG)n Simple_repeat Simple_repeat 2 24 0 2001 141 13 7 chrX 5773838 5773957 -171200183 - AluJo SINE Alu -194 118 1 843 231 77 15 chrX 5773957 5774325 -171199815 + L2 LINE L2 2652 3043 -270 2491 60 0 3 chrX 5776949 5777248 -171196892 - AluY SINE Alu -13 298 1 2463 74 3 0 chrX 5779271 5779580 -171194560 + AluY SINE Alu 1 310 -1 2113 107 0 4 chrX 5782008 5782288 -171191852 + AluSq SINE Alu 1 279 -34 619 235 142 73 chrX 5783646 5783935 -171190205 + MER58B DNA MER1_type 3 311 -30 1903 131 0 26 chrX 5783983 5784288 -171189852 + AluJb SINE Alu 1 297 -15 1438 189 86 17 chrX 5784635 5784937 -171189203 + MER58B DNA MER1_type 2 324 -17 1729 166 15 15 chrX 5785463 5785788 -171188352 + L1MB7 LINE L1 5797 6121 -63 423 129 43 0 chrX 5785808 5785878 -171188262 + L1MB5 LINE L1 6094 6166 -8 889 181 50 6 chrX 5786024 5786206 -171187934 + L1MB7 LINE L1 5902 6091 -93 1184 176 75 75 chrX 5786247 5786526 -171187614 - AluJo SINE Alu -31 281 3 369 83 50 0 chrX 5786537 5786597 -171187543 + L1MB7 LINE L1 6122 6184 0 217 258 121 45 chrX 5786698 5786830 -171187310 - L2 LINE L2 -10 3303 3162 1144 199 19 5 chrX 5788617 5788833 -171185307 + MER20 DNA MER1_type 1 219 0 22 0 0 0 chrX 5790766 5790788 -171183352 + AT_rich Low_complexity Low_complexity 1 22 0 476 325 18 24 chrX 5791279 5791448 -171182692 + MER5B DNA MER1_type 1 168 -10 28 0 0 0 chrX 5793265 5793293 -171180847 + AT_rich Low_complexity Low_complexity 1 28 0 189 0 0 0 chrX 5795452 5795473 -171178667 + (CCCCCG)n Simple_repeat Simple_repeat 1 21 0 302 310 153 72 chrX 5795672 5796353 -171177787 - L1M2 LINE L1 -5610 1239 504 187 255 21 0 chrX 5796491 5796538 -171177602 + L2 LINE L2 3264 3311 -2 307 319 66 36 chrX 5797034 5797200 -171176940 - L2 LINE L2 -780 2534 2364 655 279 40 24 chrX 5797669 5797916 -171176224 + MIR SINE MIR 9 259 -3 198 0 0 0 chrX 5797953 5797975 -171176165 + (TTCA)n Simple_repeat Simple_repeat 1 22 0 215 308 126 61 chrX 5797976 5798190 -171175950 - L2 LINE L2 -14 3258 3031 340 164 75 0 chrX 5798246 5798313 -171175827 - MER90 LTR ERV1 -360 254 183 193 302 0 0 chrX 5798540 5798593 -171175547 - MER5B DNA MER1_type 0 178 126 235 185 15 62 chrX 5798611 5798676 -171175464 + MER5B DNA MER1_type 112 173 -5 574 230 74 120 chrX 5798677 5799095 -171175045 + MLT1L LTR MaLR 144 542 -73 2449 200 34 53 chrX 5799766 5800350 -171173790 - MER90 LTR ERV1 -2 573 1 452 317 37 0 chrX 5800350 5800514 -171173626 - MIR SINE MIR -4 258 89 258 211 0 0 chrX 5800702 5800759 -171173381 + L1ME LINE L1 5799 5855 -266 466 230 129 22 chrX 5801265 5801443 -171172697 - MIR SINE MIR 0 262 66 1133 146 6 22 chrX 5802407 5802585 -171171555 - FAM SINE Alu 0 175 1 260 156 44 0 chrX 5803256 5803301 -171170839 + MLT1K LTR MaLR 540 586 -2 284 304 72 39 chrX 5804098 5804279 -171169861 + L2 LINE L2 2314 2500 -814 396 301 89 79 chrX 5804309 5804801 -171169339 + L2 LINE L2 2453 2949 -365 372 240 66 16 chrX 5804889 5805010 -171169130 + L2 LINE L2 3135 3261 -52 1646 173 0 20 chrX 5805167 5805467 -171168673 + AluJo SINE Alu 2 295 -17 419 254 45 45 chrX 5805669 5805803 -171168337 + L2 LINE L2 3139 3272 0 1867 128 0 32 chrX 5806318 5806453 -171167687 + AluSx SINE Alu 1 124 -188 198 0 0 0 chrX 5806453 5806475 -171167665 + (TA)n Simple_repeat Simple_repeat 2 23 0 1867 128 0 32 chrX 5806475 5806620 -171167520 + AluSx SINE Alu 124 272 -40 279 0 0 0 chrX 5806624 5806655 -171167485 + (TAAA)n Simple_repeat Simple_repeat 1 31 0 2964 254 88 25 chrX 5806973 5807723 -171166417 + L1M4 LINE L1 4012 4850 -1296 2030 158 56 12 chrX 5807723 5808046 -171166094 + MER1B DNA MER1_type 1 337 0 2964 254 88 25 chrX 5808046 5808351 -171165789 + L1M4 LINE L1 4850 5134 -1012 239 155 241 0 chrX 5808358 5808416 -171165724 - LOR1a LTR ERV1 -425 72 1 242 270 54 14 chrX 5808650 5808724 -171165416 - MIR SINE MIR -30 232 156 288 130 0 0 chrX 5808787 5808833 -171165307 + (CA)n Simple_repeat Simple_repeat 1 46 0 2076 129 7 7 chrX 5808872 5809166 -171164974 + AluSx SINE Alu 4 297 -15 1955 165 39 59 chrX 5809167 5809253 -171164887 + LOR1b LTR ERV1 63 149 -312 207 0 0 0 chrX 5809253 5809276 -171164864 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1955 165 39 59 chrX 5809276 5809596 -171164544 + LOR1b LTR ERV1 149 461 0 2519 68 0 0 chrX 5810651 5810959 -171163181 + AluY SINE Alu 3 310 -1 352 282 29 52 chrX 5812479 5812653 -171161487 - L1MC4a LINE L1 -1884 5924 5755 268 321 43 27 chrX 5813440 5813627 -171160513 - ERVL LTR ERVL -337 5427 5238 254 388 6 0 chrX 5814244 5814422 -171159718 - L1MC4a LINE L1 -2056 5752 5574 513 190 138 109 chrX 5814438 5814510 -171159630 + MER5A DNA MER1_type 11 79 -110 1660 193 21 0 chrX 5814510 5814795 -171159345 + AluJb SINE Alu 1 291 -21 513 190 138 109 chrX 5814795 5814896 -171159244 + MER5A DNA MER1_type 79 189 0 234 240 182 58 chrX 5814903 5815025 -171159115 - L1MC4a LINE L1 -2247 5561 5456 1774 154 6 61 chrX 5815025 5815355 -171158785 + AluSx SINE Alu 1 312 0 234 240 182 58 chrX 5815355 5815490 -171158650 - L1MC4a LINE L1 -2352 5456 5272 715 199 49 3 chrX 5816085 5816350 -171157790 + MLT1D LTR MaLR 147 505 0 503 226 119 48 chrX 5818754 5818922 -171155218 - MER117 DNA MER1_type 0 197 18 539 291 146 0 chrX 5819122 5819280 -171154860 - MER5A DNA MER1_type 0 189 9 271 280 178 8 chrX 5819353 5819509 -171154631 + MIR SINE MIR 12 189 -63 1050 173 77 29 chrX 5820371 5820579 -171153561 + MER20 DNA MER1_type 1 218 -1 5914 125 30 25 chrX 5821905 5822410 -171151730 - L1MA8 LINE L1 -3 6288 5787 1939 134 44 0 chrX 5822410 5822708 -171151432 - AluSx SINE Alu -1 311 1 5914 125 30 25 chrX 5822708 5823371 -171150769 - L1MA8 LINE L1 -504 5787 5112 197 336 69 9 chrX 5824471 5824587 -171149553 - L2 LINE L2 -21 3292 3170 2138 192 132 9 chrX 5824681 5825129 -171149011 + MLT1D LTR MaLR 3 505 0 6697 104 6 1 chrX 5825442 5827037 -171147103 + L1PA16 LINE L1 4558 6154 -12 27 0 0 0 chrX 5827037 5827064 -171147076 + AT_rich Low_complexity Low_complexity 1 27 0 219 349 95 8 chrX 5827996 5828122 -171146018 - MIR SINE MIR -123 139 3 1586 209 47 3 chrX 5828732 5829052 -171145088 + MER58B DNA MER1_type 1 334 -7 262 339 97 42 chrX 5829501 5829666 -171144474 - MER5A DNA MER1_type 0 189 16 725 126 0 18 chrX 5830201 5830312 -171143828 + AluJb SINE Alu 13 121 -191 180 77 0 0 chrX 5830312 5830338 -171143802 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 196 192 61 61 chrX 5830867 5830966 -171143174 + L2 LINE L2 2386 2484 -830 741 306 70 25 chrX 5830976 5831303 -171142837 + MLT2F LTR ERVL 3 344 -319 247 246 8 59 chrX 5831349 5831421 -171142719 + MLT2F LTR ERVL 552 617 -46 2044 161 24 24 chrX 5831421 5831793 -171142347 - MLT1A2 LTR MaLR -2 372 1 247 246 8 59 chrX 5831793 5831838 -171142302 + MLT2F LTR ERVL 617 663 0 2340 50 0 7 chrX 5831892 5832170 -171141970 - AluY SINE Alu -2 309 34 653 244 0 29 chrX 5832434 5832606 -171141534 + MIR SINE MIR 94 260 -2 1872 148 24 14 chrX 5832680 5832977 -171141163 - AluSx SINE Alu -12 300 1 2419 174 54 11 chrX 5833876 5834324 -171139816 - MLT1C LTR MaLR 0 467 1 277 303 40 0 chrX 5834462 5834561 -171139579 + MLT1J2 LTR MaLR 55 157 -293 1054 201 9 31 chrX 5835498 5835722 -171138418 + MER20 DNA MER1_type 1 219 0 183 207 86 35 chrX 5835833 5835891 -171138249 - MIR SINE MIR -1 261 201 2288 121 0 0 chrX 5835932 5836239 -171137901 - AluSx SINE Alu -5 307 1 288 240 113 95 chrX 5836451 5836531 -171137609 + L1ME4a LINE L1 5813 5890 -231 2121 133 7 0 chrX 5836531 5836824 -171137316 + AluSx SINE Alu 1 295 -17 288 240 113 95 chrX 5836824 5837026 -171137114 + L1ME4a LINE L1 5890 6100 -21 306 0 0 0 chrX 5837591 5837625 -171136515 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 684 177 0 15 chrX 5837937 5838067 -171136073 + MER20 DNA MER1_type 1 128 -91 2180 110 0 13 chrX 5838138 5838438 -171135702 - AluSx SINE Alu -14 298 3 1035 232 135 11 chrX 5838648 5839223 -171134917 + LTR50 LTR ERVL 1 791 -4 730 153 24 0 chrX 5840365 5840489 -171133651 + L1MB8 LINE L1 5989 6115 -63 44178 28 21 1 chrX 5840608 5846639 -171127501 - L1HS LINE L1 0 6155 1 552 236 9 96 chrX 5846728 5846948 -171127192 - L1MC4a LINE L1 -1853 5955 5755 491 248 72 8 chrX 5847712 5847837 -171126303 - MIR3 SINE MIR -19 189 57 2733 125 2 20 chrX 5847885 5848294 -171125846 + MER50 LTR ERV1 324 725 -9 2138 106 3 13 chrX 5849899 5850202 -171123938 + AluSp SINE Alu 1 300 -13 2209 113 0 0 chrX 5852268 5852560 -171121580 + AluSx SINE Alu 1 292 -20 395 261 71 76 chrX 5853415 5853577 -171120563 - L2 LINE L2 0 3313 3151 1733 124 0 127 chrX 5853577 5853923 -171120217 + AluJo SINE Alu 1 302 0 395 261 71 76 chrX 5853923 5853998 -171120142 - L2 LINE L2 -162 3151 3077 2263 112 3 6 chrX 5854009 5854321 -171119819 - AluSx SINE Alu -1 311 1 271 328 122 28 chrX 5855353 5855537 -171118603 + MIR3 SINE MIR 9 206 -56 601 191 0 0 chrX 5855769 5855876 -171118264 - MER5A DNA MER1_type -82 107 1 231 337 89 15 chrX 5856057 5856259 -171117881 - MLT1L LTR MaLR -202 413 197 23 33 0 0 chrX 5858203 5858233 -171115907 + AT_rich Low_complexity Low_complexity 1 30 0 2068 86 52 0 chrX 5858501 5858802 -171115338 - AluSx SINE Alu 0 315 1 360 220 60 40 chrX 5859285 5859385 -171114755 - L2 LINE L2 0 3313 3212 514 211 199 39 chrX 5859415 5859571 -171114569 + MER5A DNA MER1_type 9 189 0 504 250 11 28 chrX 5860530 5860710 -171113430 + L1M4 LINE L1 2222 2398 -3748 688 287 54 43 chrX 5860733 5861046 -171113094 + L1M4 LINE L1 2650 2958 -3188 873 153 0 23 chrX 5861046 5861177 -171112963 + FLAM_A SINE Alu 1 128 -5 688 287 54 43 chrX 5861177 5861214 -171112926 + L1M4 LINE L1 2958 2993 -3153 2841 101 3 14 chrX 5861214 5861582 -171112558 - THE1B LTR MaLR 0 364 1 688 287 54 43 chrX 5861582 5861919 -171112221 + L1M4 LINE L1 2993 3345 -2801 2143 139 124 23 chrX 5862051 5862438 -171111702 + MSTA LTR MaLR 3 428 0 594 138 60 69 chrX 5863170 5863286 -171110854 + FLAM_A SINE Alu 10 124 -18 6037 138 31 14 chrX 5863303 5864606 -171109534 - L1MA7 LINE L1 0 6291 4964 22 0 0 0 chrX 5864662 5864684 -171109456 + AT_rich Low_complexity Low_complexity 1 22 0 324 0 0 0 chrX 5865169 5865205 -171108935 + (CA)n Simple_repeat Simple_repeat 2 37 0 22 56 0 0 chrX 5865754 5865790 -171108350 + AT_rich Low_complexity Low_complexity 1 36 0 294 305 53 22 chrX 5866473 5866608 -171107532 - MIR SINE MIR -74 134 13 254 276 29 29 chrX 5867278 5867383 -171106757 - L1 LINE L1 -1134 5012 4908 181 358 173 26 chrX 5867546 5867772 -171106368 - L2 LINE L2 -5 3267 3009 612 186 98 0 chrX 5867839 5867941 -171106199 + FLAM_A SINE Alu 9 120 -22 200 305 16 47 chrX 5868149 5868277 -171105863 - L2 LINE L2 -646 2668 2545 243 291 71 47 chrX 5869166 5869293 -171104847 + MIR3 SINE MIR 73 202 -6 302 216 117 9 chrX 5870010 5870121 -171104019 - L1MEc LINE L1 -4080 2316 2194 1526 122 36 0 chrX 5870121 5870342 -171103798 - L1PA15 LINE L1 -2 6163 5935 340 256 0 22 chrX 5871112 5871202 -171102938 + L1MC4 LINE L1 6614 6701 -1341 1993 142 23 54 chrX 5871244 5871467 -171102673 - MER2 DNA MER2_type 0 344 133 1901 136 0 0 chrX 5871467 5871759 -171102381 + AluSx SINE Alu 19 310 0 1993 142 23 54 chrX 5871759 5871887 -171102253 - MER2 DNA MER2_type -211 133 3 2090 127 16 7 chrX 5872892 5873200 -171100940 + AluJb SINE Alu 1 311 -1 651 248 171 0 chrX 5873315 5873525 -171100615 - MIR SINE MIR -5 257 12 1959 141 3 0 chrX 5873603 5874028 -171100112 + AluSx SINE Alu 1 426 0 1968 132 0 4 chrX 5875826 5876107 -171098033 + AluSx SINE Alu 20 299 -13 671 258 112 27 chrX 5876281 5876541 -171097599 + L2 LINE L2 3021 3302 -11 305 141 47 16 chrX 5877642 5877706 -171096434 + L1MB7 LINE L1 6110 6175 -9 217 320 100 0 chrX 5877832 5877932 -171096208 - L2 LINE L2 0 3313 3204 2674 144 74 2 chrX 5878293 5878693 -171095447 - LOR1b LTR ERV1 0 461 26 2724 26 3 0 chrX 5878693 5878999 -171095141 + AluY SINE Alu 1 307 -4 2674 144 74 2 chrX 5878999 5879028 -171095112 - LOR1b LTR ERV1 -435 26 1 180 225 25 0 chrX 5879525 5879565 -171094575 + L3b LINE CR1 1205 1245 -338 259 243 103 56 chrX 5879782 5879889 -171094251 + MIR SINE MIR 131 242 -20 666 243 68 19 chrX 5880074 5880280 -171093860 + MIR SINE MIR 47 262 0 184 297 16 16 chrX 5880443 5880507 -171093633 - MIR SINE MIR -111 151 88 270 0 0 0 chrX 5880518 5880548 -171093592 + (TC)n Simple_repeat Simple_repeat 1 30 0 2154 189 19 43 chrX 5882108 5882578 -171091562 - MLT1C LTR MaLR -8 459 1 376 221 17 15 chrX 5882731 5882838 -171091302 + L1ME2 LINE L1 6028 6139 -31 2233 110 3 0 chrX 5883647 5883955 -171090185 + AluSq SINE Alu 1 309 -4 204 40 0 0 chrX 5891455 5891480 -171082660 + (TG)n Simple_repeat Simple_repeat 2 26 0 1120 205 19 0 chrX 5891856 5892071 -171082069 - MER20 DNA MER1_type 0 219 1 216 402 25 33 chrX 5892899 5893143 -171080997 - L2 LINE L2 -108 3164 2923 1753 121 121 14 chrX 5893327 5893609 -171080531 - AluSx SINE Alu 0 312 1 728 194 87 24 chrX 5893862 5893940 -171080200 + MER20 DNA MER1_type 1 73 -146 1652 168 157 42 chrX 5893940 5894393 -171079747 - MLT1D LTR MaLR 0 505 1 728 194 87 24 chrX 5894393 5894520 -171079620 + MER20 DNA MER1_type 73 219 0 1097 206 5 5 chrX 5894867 5895086 -171079054 + MER20 DNA MER1_type 1 219 0 284 359 84 7 chrX 5895668 5895810 -171078330 - MIR3 SINE MIR -21 187 35 294 362 48 43 chrX 5896046 5896438 -171077702 + L2 LINE L2 2087 2480 -834 187 321 115 36 chrX 5896830 5896995 -171077145 - L2 LINE L2 -7 3306 3129 1941 136 101 119 chrX 5897011 5897525 -171076615 + MLT1D LTR MaLR 1 505 0 3952 154 32 9 chrX 5898253 5899000 -171075140 + L1MB7 LINE L1 5401 6164 -20 268 327 49 43 chrX 5899971 5900133 -171074007 - MIR SINE MIR -79 183 21 * 764 231 121 5 chrX 5900094 5900293 -171073847 + MIR SINE MIR 29 250 -12 195 170 21 43 chrX 5900377 5900424 -171073716 - L2 LINE L2 -5 3308 3263 237 309 157 51 chrX 5900996 5901232 -171072908 - L3 LINE CR1 -9 1568 1308 240 100 0 0 chrX 5901456 5901496 -171072644 - L1PA13 LINE L1 -1245 4901 4862 6321 87 9 3 chrX 5901498 5902752 -171071388 + L1PA13 LINE L1 4891 6158 -5 1928 160 16 16 chrX 5903593 5903905 -171070235 + AluJo SINE Alu 1 312 0 323 282 123 26 chrX 5904244 5904439 -171069701 - LTR16C LTR ERVL -2 489 276 694 231 144 19 chrX 5904462 5904670 -171069470 - MLT1H LTR MaLR 0 555 322 493 218 9 9 chrX 5904742 5904852 -171069288 - MLT1H1 LTR MaLR -444 111 2 185 279 342 0 chrX 5905146 5905257 -171068883 + MIR SINE MIR 46 194 -68 1362 154 36 0 chrX 5905591 5905838 -171068302 - L1MA6 LINE L1 -9 6291 6036 1035 197 95 19 chrX 5905839 5906103 -171068037 - L1MD3 LINE L1 -161 7834 7551 1123 135 68 117 chrX 5907553 5907879 -171066261 + THE1C LTR MaLR 1 310 -65 3077 216 26 25 chrX 5908585 5909405 -171064735 - L1ME1 LINE L1 -52 6114 5297 227 239 0 45 chrX 5909450 5909517 -171064623 + LTR67 LTR ERVL 231 294 -263 794 239 53 0 chrX 5910007 5910216 -171063924 - MLT1H LTR MaLR -246 303 84 301 100 0 0 chrX 5910981 5911031 -171063109 - L1MB8 LINE L1 -6 6172 6123 2335 158 16 18 chrX 5911031 5911475 -171062665 - L1MB7 LINE L1 -122 6062 5620 222 237 0 0 chrX 5914082 5914158 -171059982 + CT-rich Low_complexity Low_complexity 1 76 0 2906 67 0 0 chrX 5914297 5914669 -171059471 + L1PA6 LINE L1 5777 6148 -6 439 33 0 0 chrX 5915085 5915145 -171058995 - L1MA2 LINE L1 -1 6303 6244 510 219 9 0 chrX 5917652 5917757 -171056383 + MER94 DNA DNA 1 106 -28 30 45 0 0 chrX 5918399 5918443 -171055697 + AT_rich Low_complexity Low_complexity 1 44 0 384 224 35 46 chrX 5918450 5918624 -171055516 - L1ME4a LINE L1 -3 6118 5947 1858 237 117 16 chrX 5918625 5919136 -171055004 + MLT1E LTR MaLR 31 593 0 560 277 34 43 chrX 5919169 5919494 -171054646 - L1ME4a LINE L1 -239 5882 5561 22 0 0 0 chrX 5919591 5919613 -171054527 + AT_rich Low_complexity Low_complexity 1 22 0 1016 176 5 4 chrX 6019642 6023490 -170950650 - ALR/Alpha Satellite centromeric 0 3854 1 1177 162 4 2 chrX 6023504 6025778 -170948362 + ALR/Alpha Satellite centromeric 1 2268 -18819 8441 58 7 0 chrX 6025778 6027633 -170946507 + L1PA3 LINE L1 4292 6152 -3 1177 162 4 2 chrX 6027633 6029238 -170944902 + ALR/Alpha Satellite centromeric 2268 3868 -17219 7013 47 5 2 chrX 6029238 6030861 -170943279 - L1PA3 LINE L1 -3 6152 4523 1177 162 4 2 chrX 6030861 6044528 -170929612 + ALR/Alpha Satellite centromeric 3868 21074 -13 1098 152 3 3 chrX 6044541 6046704 -170927436 + ALR/Alpha Satellite centromeric 1 2164 -59 2510 131 129 164 chrX 6046706 6047589 -170926551 - pTR5 LTR ERV1 0 2438 1587 1025 191 1 0 chrX 6047605 6049987 -170924153 - ALR/Alpha Satellite centromeric -2 2383 1 1344 133 3 0 chrX 6050001 6051432 -170922708 - ALR/Alpha Satellite centromeric 0 1434 1 1188 156 2 1 chrX 6051444 6072481 -170901659 - ALR/Alpha Satellite centromeric -1 21060 1 7319 46 0 0 chrX 6072481 6074024 -170900116 + L1PA3 LINE L1 4610 6151 -4 25 31 0 0 chrX 6074024 6074056 -170900084 + AT_rich Low_complexity Low_complexity 1 32 0 242 0 61 0 chrX 6074061 6074094 -170900046 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 1095 165 4 3 chrX 6074094 6080653 -170893487 + ALR/Alpha Satellite centromeric 1 7889 -111 7430 37 0 0 chrX 6080653 6081972 -170892168 - L1PA3 LINE L1 0 6155 4837 9294 33 0 2 chrX 6081983 6083102 -170891038 + L1PA3 LINE L1 3691 4807 -1339 1144 169 4 4 chrX 6083102 6090516 -170883624 + ALR/Alpha Satellite centromeric 1 7416 -9 1083 171 2 3 chrX 6090527 6096019 -170878121 + ALR/Alpha Satellite centromeric 1 5484 -6 1070 155 5 2 chrX 6096031 6097389 -170876751 + ALR/Alpha Satellite centromeric 1 1361 -6 1034 173 1 2 chrX 6097404 6098934 -170875206 + ALR/Alpha Satellite centromeric 1 1527 -26 1089 170 5 2 chrX 6098945 6111117 -170863023 + ALR/Alpha Satellite centromeric 1 12213 -1 1124 176 8 5 chrX 6111129 6115821 -170858319 + ALR/Alpha Satellite centromeric 1 4705 -16 5166 74 3 0 chrX 6115821 6116514 -170857626 - L1PA4 LINE L1 -1070 5076 4382 6933 58 1 9 chrX 6116514 6117586 -170856554 + L1PA4 LINE L1 5085 6152 -3 976 163 4 2 chrX 6117594 6118142 -170855998 + ALR/Alpha Satellite centromeric 1 549 -1 15868 74 9 1 chrX 6118142 6120286 -170853854 + L1PA4 LINE L1 665 2825 -3321 6247 40 3 0 chrX 6120286 6121038 -170853102 + L1PA3 LINE L1 5397 6152 -3 19383 60 2 8 chrX 6121057 6124370 -170849770 + L1PA4 LINE L1 2840 6155 0 1153 163 5 2 chrX 6124375 6134381 -170839759 + ALR/Alpha Satellite centromeric 1 10038 0 1189 143 6 3 chrX 6134394 6141374 -170832766 + ALR/Alpha Satellite centromeric 1 6997 0 1223 152 7 1 chrX 6141387 6151720 -170822420 + ALR/Alpha Satellite centromeric 1 10396 0 4736 41 7 0 chrX 6151747 6152329 -170821811 + L1PA3 LINE L1 5566 6151 -4 1099 156 3 2 chrX 6152385 6153690 -170820450 + ALR/Alpha Satellite centromeric 1 1306 0 201 74 0 0 chrX 6153708 6153735 -170820405 + (TTTTA)n Simple_repeat Simple_repeat 4 30 0 7100 50 0 0 chrX 6153735 6154702 -170819438 - L1PA4 LINE L1 -13 6142 5174 20384 49 6 8 chrX 6154702 6157324 -170816816 + L1PA4 LINE L1 2533 5148 -998 1156 163 2 3 chrX 6157326 6164527 -170809613 + ALR/Alpha Satellite centromeric 1 7198 -14 1072 169 0 4 chrX 6164542 6165047 -170809093 + ALR/Alpha Satellite centromeric 1 502 -12 1209 158 9 1 chrX 6165059 6168932 -170805208 + ALR/Alpha Satellite centromeric 1 3901 -64 21058 57 3 9 chrX 6168932 6171723 -170802417 - L1PA4 LINE L1 -1119 5027 2253 6370 86 8 0 chrX 6171723 6172841 -170801299 + L1PA4 LINE L1 5028 6151 -4 1055 167 17 4 chrX 6172874 6175745 -170798395 + ALR/Alpha Satellite centromeric 1 2906 -15 1021 178 7 4 chrX 6175758 6178973 -170795167 + ALR/Alpha Satellite centromeric 1 3224 -14 1180 157 8 3 chrX 6178987 6188885 -170785255 + ALR/Alpha Satellite centromeric 1 10054 -7923 201 39 0 0 chrX 6188885 6188911 -170785229 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 1180 157 8 3 chrX 6188911 6196865 -170777275 + ALR/Alpha Satellite centromeric 10054 17967 -10 1114 165 8 4 chrX 6196876 6203452 -170770688 + ALR/Alpha Satellite centromeric 1 6601 -34 369 0 0 0 chrX 6203454 6203495 -170770645 + (TG)n Simple_repeat Simple_repeat 2 42 0 1192 153 7 2 chrX 6203505 6213058 -170761082 + ALR/Alpha Satellite centromeric 1 9602 0 539 230 7 52 chrX 6313061 6313196 -170660944 + MIR SINE MIR 43 171 -91 322 287 64 37 chrX 6314303 6314491 -170659649 - MLT1H LTR MaLR -249 300 108 684 264 0 0 chrX 6314577 6314740 -170659400 - MLT1J1 LTR MaLR -268 178 16 197 316 26 26 chrX 6314950 6315026 -170659114 - L2 LINE L2 -527 2787 2712 844 287 0 0 chrX 6315764 6315959 -170658181 + MIR SINE MIR 51 245 -17 315 49 0 0 chrX 6317134 6317175 -170656965 + (TC)n Simple_repeat Simple_repeat 1 41 0 * 456 99 0 0 chrX 6317174 6317245 -170656895 + (CA)n Simple_repeat Simple_repeat 1 71 0 21 0 0 0 chrX 6317462 6317483 -170656657 + AT_rich Low_complexity Low_complexity 1 21 0 1036 224 25 8 chrX 6318228 6318465 -170655675 + MIR SINE MIR 11 251 -11 720 196 27 91 chrX 6319133 6319352 -170654788 - MER58A DNA MER1_type 0 224 20 654 263 0 31 chrX 6319377 6319537 -170654603 - MIR SINE MIR -107 155 1 203 323 140 11 chrX 6319553 6319739 -170654401 + L2 LINE L2 2953 3162 -151 2337 175 21 14 chrX 6319792 6320215 -170653925 - MSTB LTR MaLR 0 426 1 222 336 35 0 chrX 6320316 6320429 -170653711 - MIR SINE MIR -56 206 90 208 286 20 92 chrX 6320468 6320566 -170653574 - MER5B DNA MER1_type 0 178 88 23 68 0 0 chrX 6321182 6321226 -170652914 + AT_rich Low_complexity Low_complexity 1 44 0 931 219 10 0 chrX 6321293 6321494 -170652646 - MER20 DNA MER1_type 0 219 17 406 320 0 0 chrX 6322205 6322305 -170651835 - L2 LINE L2 -13 3300 3201 1168 214 72 3 chrX 6322415 6322705 -170651435 + MER58B DNA MER1_type 1 310 -31 1843 175 140 37 chrX 6322932 6323390 -170650750 - MLT1D LTR MaLR 0 505 1 261 226 19 0 chrX 6323808 6323861 -170650279 - MER5B DNA MER1_type 0 178 125 3730 80 11 7 chrX 6323864 6324403 -170649737 + L1MA1 LINE L1 5762 6302 0 441 324 161 51 chrX 6324783 6325637 -170648503 + L2 LINE L2 2342 3271 -1 1017 219 23 5 chrX 6325714 6325929 -170648211 + MER58A DNA MER1_type 5 223 -1 21 0 0 0 chrX 6326090 6326111 -170648029 + AT_rich Low_complexity Low_complexity 1 21 0 348 306 69 12 chrX 6326479 6326652 -170647488 + L2 LINE L2 3019 3201 -112 2266 104 3 0 chrX 6326841 6327138 -170647002 - AluSq SINE Alu -13 300 3 326 354 0 39 chrX 6327620 6327750 -170646390 + MIR SINE MIR 13 137 -125 183 146 0 0 chrX 6327808 6327849 -170646291 + (TTATA)n Simple_repeat Simple_repeat 2 42 0 735 145 88 36 chrX 6327923 6328116 -170646024 + L1MA5A LINE L1 6093 6295 -2 198 0 0 0 chrX 6328509 6328531 -170645609 + (T)n Simple_repeat Simple_repeat 1 22 0 2266 107 0 17 chrX 6329329 6329628 -170644512 - AluSc SINE Alu -15 294 1 191 204 20 0 chrX 6329907 6329956 -170644184 + (CATATA)n Simple_repeat Simple_repeat 1 50 0 903 182 11 32 chrX 6329965 6330152 -170643988 + MER20 DNA MER1_type 3 185 -34 183 339 25 25 chrX 6330243 6330361 -170643779 + MIR3 SINE MIR 9 126 -82 1078 300 96 43 chrX 6331764 6332351 -170641789 - L2 LINE L2 -1630 1684 1057 2523 174 22 24 chrX 6332351 6332857 -170641283 + MLT1D LTR MaLR 1 505 0 1078 300 96 43 chrX 6332857 6332923 -170641217 - L2 LINE L2 -2257 1057 996 542 242 150 55 chrX 6333525 6333818 -170640322 + L1MC/D LINE L1 5282 5596 -669 6278 91 3 0 chrX 6333818 6334868 -170639272 - L1PB1 LINE L1 -1 6150 5104 542 242 150 55 chrX 6334868 6334945 -170639195 + L1MC/D LINE L1 5596 5664 -601 474 192 20 68 chrX 6334966 6335112 -170639028 - MLT1J2 LTR MaLR -48 402 264 825 196 131 5 chrX 6335581 6335780 -170638360 + MER58A DNA MER1_type 1 224 0 297 279 0 0 chrX 6336925 6337011 -170637129 + MIR SINE MIR 163 248 -14 207 100 0 0 chrX 6337018 6337048 -170637092 + (CAT)n Simple_repeat Simple_repeat 1 30 0 226 210 0 65 chrX 6337427 6337489 -170636651 + MER112 DNA MER1_type 17 74 -186 1005 211 33 9 chrX 6338833 6339046 -170635094 + MER58A DNA MER1_type 6 223 -1 1681 144 24 94 chrX 6339216 6339590 -170634550 - Tigger3(Golem) DNA MER2_type 0 3029 1 232 273 81 20 chrX 6339809 6339908 -170634232 - MLT1L LTR MaLR -366 249 145 242 242 0 76 chrX 6340128 6340194 -170633946 + L2 LINE L2 3206 3266 -6 408 40 0 0 chrX 6341664 6341714 -170632426 + (CA)n Simple_repeat Simple_repeat 2 51 0 1722 140 15 4 chrX 6342196 6342286 -170631854 - AluJb SINE Alu -44 268 181 207 0 0 0 chrX 6342286 6342309 -170631831 + (CACCC)n Simple_repeat Simple_repeat 3 25 0 1722 140 15 4 chrX 6342309 6342483 -170631657 - AluJb SINE Alu -131 181 1 248 357 83 0 chrX 6342508 6342592 -170631548 + L2 LINE L2 3133 3223 -49 21 36 0 0 chrX 6343452 6343480 -170630660 + AT_rich Low_complexity Low_complexity 1 28 0 322 282 0 0 chrX 6343892 6343970 -170630170 - L3 LINE CR1 -64 1513 1436 802 176 10 137 chrX 6343985 6344292 -170629848 - L1MC3 LINE L1 -15 7770 7503 614 197 131 27 chrX 6344309 6344492 -170629648 - MLT1F1 LTR MaLR -50 517 316 247 271 101 55 chrX 6344640 6344839 -170629301 - L3 LINE CR1 -223 1354 1147 980 211 33 5 chrX 6345177 6345390 -170628750 + MER20 DNA MER1_type 1 219 0 378 215 82 30 chrX 6345757 6345892 -170628248 - Charlie8 DNA MER1_type -2231 186 45 337 302 31 16 chrX 6346443 6346572 -170627568 + MIR SINE MIR 49 179 -83 191 299 58 0 chrX 6346671 6346758 -170627382 + MIR SINE MIR 54 145 -63 2497 102 19 13 chrX 6346801 6347174 -170626966 + THE1C LTR MaLR 1 375 0 6386 98 42 59 chrX 6347175 6348258 -170625882 + THE1C-int LTR MaLR 2 1066 -514 1707 177 9 14 chrX 6348253 6348603 -170625537 - L1MC2 LINE L1 -408 5936 5589 * 219 36 0 0 chrX 6348725 6348753 -170625387 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 2271 99 0 37 chrX 6350583 6350907 -170623233 - AluSx SINE Alu 0 312 1 1655 160 57 3 chrX 6350948 6351280 -170622860 + L1MA4 LINE L1 5945 6294 -6 189 314 161 8 chrX 6351299 6351417 -170622723 - MIR SINE MIR -2 260 125 1075 159 29 10 chrX 6352263 6352470 -170621670 + L1MC1 LINE L1 6113 6323 -10 420 222 21 14 chrX 6352491 6352635 -170621505 + (CATA)n Simple_repeat Simple_repeat 1 145 0 2395 81 0 13 chrX 6352750 6353057 -170621083 + AluSc SINE Alu 1 303 -6 207 100 0 0 chrX 6355432 6355462 -170618678 + (A)n Simple_repeat Simple_repeat 1 30 0 3251 48 22 0 chrX 6356827 6357244 -170616896 + L1PA5 LINE L1 5728 6153 -1 609 242 12 6 chrX 6357944 6358105 -170616035 + L2 LINE L2 678 839 -2475 601 271 50 9 chrX 6358180 6358391 -170615749 - MIR SINE MIR -49 213 2 314 293 152 19 chrX 6358409 6358778 -170615362 + L2 LINE L2 872 1289 -2025 1260 95 8 104 chrX 6361296 6361537 -170612603 + L1PA15 LINE L1 5942 6159 -6 1345 117 4 0 chrX 6361918 6362148 -170611992 + L1PA7 LINE L1 2997 3227 -2919 * 6397 37 0 0 chrX 6362146 6362965 -170611175 - L1P LINE L1 -3692 2454 1636 7872 14 0 0 chrX 6362965 6364357 -170609783 + L1PA2 LINE L1 4762 6153 -2 3118 118 4 0 chrX 6364361 6364861 -170609279 + L1PA7 LINE L1 3230 3731 -2415 7096 52 6 2 chrX 6364862 6366529 -170607611 + L1PA7 LINE L1 4480 6154 0 1550 138 5 0 chrX 6366655 6366872 -170607268 - AluSx SINE Alu -94 218 1 283 270 30 60 chrX 6367066 6367166 -170606974 - MIR SINE MIR -48 214 118 733 291 124 45 chrX 6367468 6367983 -170606157 - MLT1L LTR MaLR -59 556 1 685 233 56 42 chrX 6368869 6369084 -170605056 - MER20 DNA MER1_type -1 218 1 747 171 50 17 chrX 6369340 6369521 -170604619 + MER53 DNA DNA 1 187 -2 2496 135 36 42 chrX 6370493 6370997 -170603143 - L1MB8 LINE L1 -6 6172 5672 946 172 41 0 chrX 6371417 6371586 -170602554 - MER45A DNA AcHobo -2 176 1 2519 199 105 5 chrX 6372454 6373102 -170601038 - L1ME3 LINE L1 -11 6134 5422 306 214 57 64 chrX 6373102 6373123 -170601017 - L1MA10 LINE L1 -2 6332 6312 2934 224 39 17 chrX 6373123 6373936 -170600204 - L1ME2 LINE L1 -9 6155 5325 2158 239 67 40 chrX 6373999 6375085 -170599055 - L1ME2 LINE L1 -851 5295 4147 467 205 161 53 chrX 6375143 6375484 -170598656 - L1ME3 LINE L1 -746 5383 5006 426 20 0 0 chrX 6375513 6375564 -170598576 + (TG)n Simple_repeat Simple_repeat 2 52 0 421 266 53 89 chrX 6375616 6376010 -170598130 + L1ME4a LINE L1 5465 5844 -277 2211 200 20 20 chrX 6376012 6376468 -170597672 - MSTB2 LTR MaLR 0 457 2 1747 200 30 30 chrX 6377349 6377810 -170596330 - MLT1C LTR MaLR 0 467 7 829 276 96 68 chrX 6378545 6378810 -170595330 + L2 LINE L2 2864 3147 -166 1103 161 28 5 chrX 6378810 6379021 -170595119 + MER20 DNA MER1_type 1 216 -3 829 276 96 68 chrX 6379021 6379193 -170594947 + L2 LINE L2 3147 3313 0 320 244 12 0 chrX 6379286 6379368 -170594772 - L1MCc LINE L1 -5519 904 822 314 272 35 9 chrX 6379449 6379563 -170594577 - L1ME3 LINE L1 -1572 4557 4441 578 118 0 55 chrX 6379927 6380037 -170594103 - L1MD3 LINE L1 -12 7983 7880 782 225 6 0 chrX 6380211 6380371 -170593769 - MER45A DNA AcHobo -17 161 1 1374 200 61 47 chrX 6381958 6382318 -170591822 - MLT1A1 LTR MaLR 0 365 1 235 276 103 0 chrX 6382758 6382845 -170591295 - L1ME3 LINE L1 -5075 1044 949 1161 249 24 51 chrX 6382853 6383085 -170591055 - L1ME3A LINE L1 -2 6168 5951 1942 156 0 0 chrX 6383085 6383422 -170590718 - AluSx SINE Alu 0 342 6 1161 249 24 51 chrX 6383422 6383641 -170590499 - L1ME3A LINE L1 -219 5951 5728 401 79 0 0 chrX 6383735 6383798 -170590342 - AluJo SINE Alu -8 304 242 1027 171 0 0 chrX 6383810 6383968 -170590172 - AluJo SINE Alu -154 158 1 1693 197 3 0 chrX 6384325 6384620 -170589520 + AluJo SINE Alu 5 300 -12 211 374 24 32 chrX 6385023 6385146 -170588994 - L2 LINE L2 -185 3087 2966 402 74 0 0 chrX 6385146 6385200 -170588940 + (GGA)n Simple_repeat Simple_repeat 2 55 0 481 207 16 16 chrX 6385276 6385397 -170588743 + MER3 DNA MER1_type 48 168 -41 891 155 14 26 chrX 6385409 6385757 -170588383 + MER3 DNA MER1_type 2234 2623 0 324 240 195 32 chrX 6385796 6385950 -170588190 + MIR SINE MIR 84 262 0 26 0 0 0 chrX 6386845 6386871 -170587269 + AT_rich Low_complexity Low_complexity 1 26 0 341 296 113 54 chrX 6387021 6387224 -170586916 - MLT1J LTR MaLR -10 501 287 2015 154 0 7 chrX 6387484 6387790 -170586350 + AluJo SINE Alu 1 304 -8 302 306 37 15 chrX 6389559 6389693 -170584447 - L2 LINE L2 0 3272 3136 401 360 89 0 chrX 6389733 6389936 -170584204 + L2 LINE L2 2804 3024 -289 298 310 123 7 chrX 6390079 6390234 -170583906 + MLT1I LTR MaLR 235 407 -2 716 239 29 0 chrX 6390250 6390388 -170583752 - MIR SINE MIR -96 166 25 197 214 0 0 chrX 6390494 6390536 -170583604 + L2 LINE L2 3231 3272 0 1786 228 52 90 chrX 6390551 6391165 -170582975 - MLT1E LTR MaLR 0 593 3 522 183 91 63 chrX 6391466 6391641 -170582499 - L1ME1 LINE L1 -4 6162 5983 567 282 48 52 chrX 6391691 6391943 -170582197 + MIR SINE MIR 2 252 -10 1021 234 13 99 chrX 6392045 6392439 -170581701 + L2 LINE L2 2953 3312 -1 320 266 65 29 chrX 6392454 6392593 -170581547 - MIR SINE MIR -48 214 71 1000 283 113 3 chrX 6393125 6393478 -170580662 - LTR16C LTR ERVL 0 491 100 2075 242 38 14 chrX 6393512 6394016 -170580124 + LTR40a LTR ERVL 1 516 -3 790 252 54 32 chrX 6394785 6395190 -170578950 - L1M4 LINE L1 -1527 4619 4206 2219 75 0 55 chrX 6396865 6397173 -170576967 + AluY SINE Alu 1 291 -20 659 50 29 43 chrX 6397790 6397930 -170576210 + (TA)n Simple_repeat Simple_repeat 1 138 0 2333 93 0 7 chrX 6398677 6398979 -170575161 + AluSx SINE Alu 1 300 -12 200 241 0 74 chrX 6398999 6399053 -170575087 + L2 LINE L2 3264 3313 0 196 213 0 43 chrX 6399253 6399300 -170574840 - L2 LINE L2 -2 3311 3267 915 207 20 15 chrX 6400218 6400421 -170573719 + MER20 DNA MER1_type 16 219 0 360 0 0 0 chrX 6400881 6400921 -170573219 + (CA)n Simple_repeat Simple_repeat 2 41 0 210 356 85 0 chrX 6402260 6402378 -170571762 - L2 LINE L2 -956 2358 2231 374 218 92 0 chrX 6402394 6402481 -170571659 + MER5B DNA MER1_type 1 95 -83 213 272 194 0 chrX 6402899 6403002 -170571138 - L2 LINE L2 -2415 899 777 1327 188 28 0 chrX 6403490 6403708 -170570432 - MER58A DNA MER1_type 0 224 1 1134 154 72 19 chrX 6405272 6405480 -170568660 - MER20 DNA MER1_type 0 219 1 389 268 73 8 chrX 6405633 6405756 -170568384 - MER94 DNA DNA 0 134 4 289 244 61 52 chrX 6406500 6406615 -170567525 - MLT1J LTR MaLR -203 308 193 245 217 0 18 chrX 6406690 6406754 -170567386 - MLT1J LTR MaLR -454 57 6 1012 208 45 32 chrX 6406812 6407033 -170567107 + MER58A DNA MER1_type 1 224 0 2620 225 105 40 chrX 6407037 6407165 -170566975 + L1ME3A LINE L1 5300 5418 -752 2431 90 0 6 chrX 6407165 6407476 -170566664 - AluY SINE Alu 0 311 3 2620 225 105 40 chrX 6407476 6408165 -170565975 + L1ME3A LINE L1 5418 6170 0 212 207 17 52 chrX 6409148 6409206 -170564934 + (TATATG)n Simple_repeat Simple_repeat 3 58 0 1299 159 66 19 chrX 6411623 6411881 -170562259 - MER58B DNA MER1_type 0 341 72 232 210 32 0 chrX 6412591 6412653 -170561487 - MIR SINE MIR 0 262 199 1124 231 29 91 chrX 6413195 6413679 -170560461 + LTR16A1 LTR ERVL 4 457 0 198 368 86 8 chrX 6413895 6414012 -170560128 - L3 LINE CR1 -82 1495 1370 270 193 0 0 chrX 6414012 6414069 -170560071 + CT-rich Low_complexity Low_complexity 2 58 0 2814 169 40 20 chrX 6414071 6414614 -170559526 - L1MB7 LINE L1 -15 6169 5616 426 293 96 11 chrX 6414616 6414804 -170559336 - L3 LINE CR1 -193 1384 1181 258 348 33 0 chrX 6415382 6415474 -170558666 + MIR SINE MIR 39 133 -129 359 258 61 42 chrX 6415489 6415674 -170558466 - MER5A DNA MER1_type 0 178 1 210 293 13 13 chrX 6415694 6415769 -170558371 - L3b LINE CR1 -249 1334 1260 1358 159 0 44 chrX 6415894 6416120 -170558020 - MER20 DNA MER1_type -1 218 3 1155 218 9 0 chrX 6416901 6417117 -170557023 - MER20 DNA MER1_type -1 218 1 245 318 231 15 chrX 6417209 6417404 -170556736 + MIR SINE MIR 24 260 -2 1767 219 41 92 chrX 6418576 6419001 -170555139 + L1ME3A LINE L1 5552 5937 -233 1090 175 31 49 chrX 6419001 6419224 -170554916 + MER20 DNA MER1_type 1 219 0 1767 219 41 92 chrX 6419224 6419414 -170554726 + L1ME3A LINE L1 5937 6135 -35 24 0 0 0 chrX 6419941 6419965 -170554175 + AT_rich Low_complexity Low_complexity 1 24 0 200 191 48 0 chrX 6420148 6420190 -170553950 + L2 LINE L2 3255 3298 -15 352 222 122 0 chrX 6420190 6420280 -170553860 + L1PB4 LINE L1 5957 6057 -99 362 204 26 18 chrX 6420281 6420394 -170553746 + L1MA6 LINE L1 6185 6298 -2 203 0 0 36 chrX 6421594 6421622 -170552518 + (TTTTTA)n Simple_repeat Simple_repeat 2 28 0 235 250 62 0 chrX 6421707 6421771 -170552369 - MER3 DNA MER1_type -134 75 8 1344 213 64 69 chrX 6421773 6422224 -170551916 - L1ME3 LINE L1 -151 6011 5563 198 103 0 0 chrX 6422395 6422424 -170551716 + (TCTCC)n Simple_repeat Simple_repeat 3 31 0 504 48 0 0 chrX 6423260 6423323 -170550817 + (TCC)n Simple_repeat Simple_repeat 3 65 0 403 234 81 18 chrX 6424203 6424314 -170549826 - L2 LINE L2 -13 3300 3183 204 237 0 0 chrX 6424375 6424413 -170549727 + polypurine Low_complexity Low_complexity 4 41 0 198 373 19 32 chrX 6424835 6424993 -170549147 + MIR3 SINE MIR 50 205 -3 22 35 0 0 chrX 6425364 6425393 -170548747 + AT_rich Low_complexity Low_complexity 1 29 0 266 220 0 0 chrX 6426047 6426097 -170548043 - L2 LINE L2 -1 3271 3222 267 267 13 0 chrX 6426314 6426389 -170547751 + L2 LINE L2 2361 2436 -878 181 336 124 18 chrX 6426845 6426958 -170547182 - MIR3 SINE MIR -76 132 8 375 299 15 51 chrX 6427356 6427493 -170546647 + L2 LINE L2 3141 3272 0 185 246 53 0 chrX 6428499 6428556 -170545584 + L2 LINE L2 2357 2416 -898 787 303 90 24 chrX 6428571 6429155 -170544985 + L2 LINE L2 2685 3313 0 242 298 43 32 chrX 6429283 6429377 -170544763 + MER5B DNA MER1_type 84 178 0 921 201 45 0 chrX 6429663 6429842 -170544298 + MER20 DNA MER1_type 33 219 0 523 232 93 7 chrX 6431780 6431931 -170542209 - LTR33 LTR ERVL 0 521 358 26 74 0 0 chrX 6432520 6432574 -170541566 + AT_rich Low_complexity Low_complexity 1 54 0 810 268 70 25 chrX 6433139 6433382 -170540758 - MIR SINE MIR 0 262 9 1219 244 55 45 chrX 6433436 6433834 -170540306 - L1MD2 LINE L1 -2 6357 5956 501 62 0 0 chrX 6434003 6434068 -170540072 + (TA)n Simple_repeat Simple_repeat 2 66 0 337 282 70 76 chrX 6435131 6435531 -170538609 - MLT1H LTR MaLR 0 549 85 1844 98 40 0 chrX 6435961 6436236 -170537904 - L1MA8 LINE L1 -1 6290 6005 1891 195 15 12 chrX 6436641 6436980 -170537160 + MER58B DNA MER1_type 1 340 -1 710 228 168 0 chrX 6439116 6439313 -170534827 + L1MB7 LINE L1 5945 6174 -10 431 212 0 30 chrX 6439652 6439784 -170534356 + L1MB8 LINE L1 6044 6171 -7 327 205 27 98 chrX 6439816 6439928 -170534212 + L1MC4 LINE L1 6600 6703 -1339 3936 167 15 46 chrX 6440470 6441365 -170532775 - L1MB7 LINE L1 -15 6169 5417 675 275 19 88 chrX 6440819 6441179 -170532961 - L1PA3 LINE L1 -330 5825 5506 675 252 0 0 chrX 6441179 6441298 -170532842 - FLAM_A SINE Alu -14 119 1 675 275 19 88 chrX 6441298 6441424 -170532716 - L1PA3 LINE L1 -649 5506 5373 180 300 86 50 chrX 6441945 6442165 -170531975 - L2 LINE L2 -357 2957 2730 405 58 0 0 chrX 6442181 6442233 -170531907 + (TG)n Simple_repeat Simple_repeat 1 52 0 4305 162 17 19 chrX 6443336 6444156 -170529984 + L1MB8 LINE L1 5360 6177 -1 217 118 39 0 chrX 6444600 6444651 -170529489 + (TG)n Simple_repeat Simple_repeat 2 54 0 504 309 55 59 chrX 6444857 6444926 -170529214 - MIR SINE MIR -21 241 173 1706 157 36 4 chrX 6444926 6445207 -170528933 + AluJb SINE Alu 1 290 -22 504 309 55 59 chrX 6445207 6445357 -170528783 - MIR SINE MIR -89 173 23 21 0 0 0 chrX 6446397 6446418 -170527722 + AT_rich Low_complexity Low_complexity 1 21 0 1279 168 91 27 chrX 6447498 6447796 -170526344 - MER33 DNA MER1_type -1 323 7 336 350 109 0 chrX 6448963 6449146 -170524994 + MIR SINE MIR 32 234 -28 1048 130 17 122 chrX 6449482 6449720 -170524420 + MER20 DNA MER1_type 3 215 -4 194 304 25 25 chrX 6449889 6449968 -170524172 + L3 LINE CR1 1496 1574 -3 225 336 71 14 chrX 6450718 6450858 -170523282 + L2 LINE L2 2949 3096 -176 3539 140 29 16 chrX 6450884 6451511 -170522629 - L1MB7 LINE L1 -19 6165 5531 334 68 0 0 chrX 6451520 6451564 -170522576 - MADE1 DNA Mariner -34 46 3 207 0 0 0 chrX 6451747 6451770 -170522370 + (T)n Simple_repeat Simple_repeat 1 23 0 204 40 0 0 chrX 6452837 6452862 -170521278 + (T)n Simple_repeat Simple_repeat 1 25 0 666 232 79 0 chrX 6452864 6453028 -170521112 - MIR SINE MIR -10 252 76 1742 168 9 25 chrX 6453213 6453528 -170520612 - AluJb SINE Alu -2 310 1 234 216 65 22 chrX 6453613 6453752 -170520388 + (TA)n Simple_repeat Simple_repeat 2 146 0 183 184 0 0 chrX 6454152 6454190 -170519950 + (TG)n Simple_repeat Simple_repeat 2 39 0 233 259 19 0 chrX 6454555 6454609 -170519531 + L2 LINE L2 3255 3309 -4 828 250 55 5 chrX 6455517 6455717 -170518423 - MER63A DNA MER1_type 0 210 1 779 235 68 0 chrX 6456096 6456258 -170517882 + MER45A DNA AcHobo 6 178 0 1481 181 29 29 chrX 6456565 6456908 -170517232 - L1MB8 LINE L1 -1 6177 5835 474 318 92 18 chrX 6457319 6457536 -170516604 + MIR SINE MIR 19 251 -11 193 222 44 0 chrX 6457708 6457753 -170516387 + MIR SINE MIR 212 258 -4 263 344 179 0 chrX 6458360 6458511 -170515629 + MIR SINE MIR 20 197 -65 186 288 63 9 chrX 6458788 6458899 -170515241 - L2 LINE L2 -275 3038 2922 299 255 10 146 chrX 6459158 6459350 -170514790 + MER5A DNA MER1_type 6 182 -7 337 188 27 181 chrX 6459360 6459509 -170514631 - MER5B DNA MER1_type -52 126 1 7268 48 0 0 chrX 6459648 6460752 -170513388 - L1PA5 LINE L1 0 6154 5051 3041 43 0 0 chrX 6460753 6461124 -170513016 + L1PA5 LINE L1 4709 5079 -1067 903 231 42 9 chrX 6461899 6462111 -170512029 - MER20 DNA MER1_type 0 219 1 7543 30 0 0 chrX 6462338 6463566 -170510574 + L1PA4 LINE L1 4916 6149 -6 605 225 59 6 chrX 6463756 6463925 -170510215 - MER5B DNA MER1_type 0 178 1 212 324 18 12 chrX 6465675 6465845 -170508295 + (TTA)n Simple_repeat Simple_repeat 3 173 0 468 208 85 19 chrX 6466184 6466290 -170507850 + MER81 DNA DNA 2 114 0 680 235 41 12 chrX 6466300 6466470 -170507670 - MER5B DNA MER1_type 0 178 4 489 279 72 36 chrX 6466704 6466926 -170507214 - L1MC4 LINE L1 -1042 7000 6771 24 0 0 0 chrX 6468734 6468758 -170505382 + AT_rich Low_complexity Low_complexity 1 24 0 237 281 0 0 chrX 6468997 6469093 -170505047 + (CACCAT)n Simple_repeat Simple_repeat 3 98 0 1096 151 80 0 chrX 6470208 6470407 -170503733 + MER20 DNA MER1_type 1 215 -4 789 220 16 0 chrX 6470419 6470605 -170503535 + MER5A DNA MER1_type 1 189 0 684 255 122 57 chrX 6471728 6472081 -170502059 + MLT1H LTR MaLR 1 376 -173 588 217 0 0 chrX 6472768 6472911 -170501229 + L1MB7 LINE L1 6033 6175 -9 1735 142 6 13 chrX 6473539 6473855 -170500285 - L1MB8 LINE L1 -3 6175 5862 197 250 47 31 chrX 6473866 6473930 -170500210 - L2 LINE L2 0 3313 3249 1898 212 44 40 chrX 6474449 6474944 -170499196 - MLT1D LTR MaLR -1 504 8 200 315 7 21 chrX 6475041 6475184 -170498956 + T-rich Low_complexity Low_complexity 2 142 0 485 256 218 31 chrX 6476022 6476311 -170497829 - L2 LINE L2 -4 3309 2967 309 207 0 0 chrX 6476656 6476714 -170497426 + MER3 DNA MER1_type 1 58 -151 29 59 0 15 chrX 6477979 6478003 -170496137 + AT_rich Low_complexity Low_complexity 1 24 -43 345 24 0 0 chrX 6478003 6478045 -170496095 + (TG)n Simple_repeat Simple_repeat 1 42 0 29 59 0 15 chrX 6478045 6478088 -170496052 + AT_rich Low_complexity Low_complexity 24 67 0 2470 75 0 0 chrX 6478323 6478629 -170495511 - AluY SINE Alu 0 311 6 1097 191 48 0 chrX 6479685 6479874 -170494266 - MER58A DNA MER1_type -26 198 1 279 0 0 0 chrX 6480200 6480231 -170493909 + (TTG)n Simple_repeat Simple_repeat 2 32 0 547 320 57 12 chrX 6481420 6481664 -170492476 - MIR SINE MIR -7 255 1 186 198 504 33 chrX 6481722 6481843 -170492297 + MER5A DNA MER1_type 9 186 -3 255 31 0 0 chrX 6481926 6481958 -170492182 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 482 254 9 0 chrX 6482067 6482177 -170491963 + MER94 DNA DNA 21 131 -3 235 305 24 24 chrX 6482306 6482388 -170491752 - L2 LINE L2 -5 3267 3186 208 293 12 49 chrX 6483012 6483094 -170491046 + L2 LINE L2 3194 3272 0 294 336 155 27 chrX 6483812 6484256 -170489884 + L2 LINE L2 1706 2206 -1108 1560 147 34 54 chrX 6484936 6485262 -170488878 + MLT1A2 LTR MaLR 4 339 -57 222 277 53 43 chrX 6485299 6485393 -170488747 - MIR SINE MIR -118 144 50 460 257 198 32 chrX 6485752 6486090 -170488050 - MLT1L LTR MaLR -18 597 204 347 301 29 43 chrX 6486482 6486691 -170487449 - MLT1L LTR MaLR -407 208 3 195 267 0 0 chrX 6486694 6486739 -170487401 - MIR SINE MIR -152 110 66 4293 110 5 3 chrX 6486752 6487372 -170486768 - L1PA15 LINE L1 0 6165 5545 225 0 0 0 chrX 6488449 6488474 -170485666 + (TTA)n Simple_repeat Simple_repeat 3 27 0 19108 30 2 0 chrX 6488474 6491523 -170482617 - L1PA3 LINE L1 -18 6137 3085 2139 102 0 7 chrX 6492343 6492626 -170481514 + AluSp SINE Alu 1 281 -32 543 31 0 0 chrX 6492628 6492693 -170481447 + (GAAA)n Simple_repeat Simple_repeat 2 66 0 2749 171 46 2 chrX 6492696 6493241 -170480899 + L1MB7 LINE L1 5597 6165 -19 2115 50 4 0 chrX 6494689 6494950 -170479190 - L1PA8 LINE L1 -7 6165 5904 870 358 86 49 chrX 6495384 6496486 -170477654 - L3 LINE CR1 -17 1560 418 294 206 0 0 chrX 6496693 6496766 -170477374 + (ATG)n Simple_repeat Simple_repeat 3 75 0 261 0 0 0 chrX 6496768 6496797 -170477343 + (TA)n Simple_repeat Simple_repeat 2 30 0 * 537 16 0 0 chrX 6496796 6496858 -170477282 + (GA)n Simple_repeat Simple_repeat 2 63 0 303 275 12 0 chrX 6496860 6496940 -170477200 - MIR SINE MIR -25 237 157 438 20 0 0 chrX 6497524 6497575 -170476565 + (CA)n Simple_repeat Simple_repeat 1 51 0 208 180 0 33 chrX 6498184 6498245 -170475895 + (TA)n Simple_repeat Simple_repeat 2 60 0 393 75 0 0 chrX 6500024 6500077 -170474063 + (TG)n Simple_repeat Simple_repeat 2 54 0 359 249 20 9 chrX 6500931 6501043 -170473097 - MIR3 SINE MIR -24 184 68 371 300 54 8 chrX 6501100 6501230 -170472910 - MIR SINE MIR -71 191 56 667 266 5 29 chrX 6501590 6501797 -170472343 - L2 LINE L2 0 3313 3112 1381 167 34 30 chrX 6502214 6502483 -170471657 + AluJo SINE Alu 39 308 -4 324 0 0 0 chrX 6504166 6504202 -170469938 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 1667 167 32 0 chrX 6504346 6504667 -170469473 - AluJb SINE Alu 0 352 23 1088 215 9 0 chrX 6504708 6504927 -170469213 - MER58A DNA MER1_type -2 222 2 782 161 0 15 chrX 6505026 6505156 -170468984 + FLAM_A SINE Alu 2 129 -4 262 243 105 144 chrX 6506283 6506416 -170467724 + MER5B DNA MER1_type 1 127 -51 2457 82 0 16 chrX 6506416 6506734 -170467406 - AluSq SINE Alu 0 313 1 262 243 105 144 chrX 6506734 6506781 -170467359 + MER5B DNA MER1_type 127 174 -4 977 158 94 10 chrX 6506795 6506997 -170467143 + MER20 DNA MER1_type 1 219 0 21 0 0 0 chrX 6507097 6507118 -170467022 + AT_rich Low_complexity Low_complexity 1 21 0 796 263 11 0 chrX 6507368 6507554 -170466586 - MER5A DNA MER1_type 0 189 2 22 0 0 0 chrX 6509905 6509927 -170464213 + AT_rich Low_complexity Low_complexity 1 22 0 694 245 10 16 chrX 6509927 6510046 -170464094 - L1ME1 LINE L1 -17 6149 6030 183 42 0 0 chrX 6510046 6510070 -170464070 + (CCCCCA)n Simple_repeat Simple_repeat 1 24 0 694 245 10 16 chrX 6510070 6510142 -170463998 - L1ME1 LINE L1 -136 6030 5959 887 296 112 51 chrX 6510178 6510384 -170463756 - L2 LINE L2 -1 3312 3120 2485 48 0 0 chrX 6510384 6510677 -170463463 - AluY SINE Alu -18 293 1 887 296 112 51 chrX 6510677 6511446 -170462694 - L2 LINE L2 -193 3120 2225 36 62 0 0 chrX 6511452 6511516 -170462624 + AT_rich Low_complexity Low_complexity 1 64 0 406 274 32 24 chrX 6511945 6512069 -170462071 - L2 LINE L2 -3 3310 3186 371 369 51 24 chrX 6512119 6512493 -170461647 - L2 LINE L2 -1156 2158 1775 203 300 64 36 chrX 6512575 6512685 -170461455 + MIR SINE MIR 92 204 -58 2031 184 31 33 chrX 6512911 6513367 -170460773 + MSTB2 LTR MaLR 3 457 0 186 270 70 120 chrX 6513423 6513523 -170460617 + L2 LINE L2 3143 3237 -35 285 183 61 17 chrX 6513837 6513952 -170460188 + (TA)n Simple_repeat Simple_repeat 1 120 0 313 247 0 0 chrX 6514395 6514472 -170459668 - MER116 DNA Mariner 0 80 4 37 23 0 0 chrX 6514953 6514997 -170459143 + AT_rich Low_complexity Low_complexity 1 44 0 3323 76 0 0 chrX 6515464 6515897 -170458243 + L1PA7 LINE L1 5716 6148 -6 2748 94 11 3 chrX 6517579 6517951 -170456189 - THE1C LTR MaLR 0 375 1 1840 182 25 37 chrX 6518133 6518539 -170455601 + L1MD2 LINE L1 5956 6356 -3 3483 139 54 27 chrX 6519571 6520203 -170453937 - MER39B LTR ERV1 -4 649 1 430 278 166 12 chrX 6520364 6520533 -170453607 + MIR SINE MIR 58 252 -10 979 190 78 25 chrX 6520693 6520977 -170453163 - L1MA7 LINE L1 -11 6280 5982 191 283 0 0 chrX 6521003 6521056 -170453084 + MIR SINE MIR 207 259 -3 1539 123 73 0 chrX 6521120 6521381 -170452759 + MER7A DNA MER2_type 1 278 -68 270 171 289 0 chrX 6521473 6521549 -170452591 + MER7A DNA MER2_type 249 346 0 250 231 150 75 chrX 6522600 6522773 -170451367 - MIR SINE MIR -42 220 35 21 36 0 0 chrX 6524222 6524250 -170449890 + AT_rich Low_complexity Low_complexity 1 28 0 2476 90 3 0 chrX 6524697 6525009 -170449131 + AluSp SINE Alu 1 313 0 1208 190 9 0 chrX 6525136 6525352 -170448788 - MER20 DNA MER1_type 0 219 2 2600 14 0 0 chrX 6525978 6526262 -170447878 + AluYb8 SINE Alu 12 295 -23 8114 106 39 19 chrX 6526301 6527230 -170446910 - HSMAR2 DNA Mariner -1 1301 338 2340 106 3 6 chrX 6527230 6527542 -170446598 - AluSq SINE Alu -2 311 1 8114 106 39 19 chrX 6527542 6527886 -170446254 - HSMAR2 DNA Mariner -964 338 2 2020 105 0 4 chrX 6528503 6528761 -170445379 + AluSq SINE Alu 39 295 -18 739 174 111 53 chrX 6528769 6528976 -170445164 + MER20 DNA MER1_type 1 219 0 229 29 0 0 chrX 6529276 6529311 -170444829 - L1MA3 LINE L1 0 6305 6271 551 232 7 0 chrX 6530203 6530358 -170443782 + (TG)n Simple_repeat Simple_repeat 2 157 0 25 51 0 0 chrX 6531413 6531452 -170442688 + AT_rich Low_complexity Low_complexity 1 39 0 1141 167 11 0 chrX 6531622 6531808 -170442332 + MER5A DNA MER1_type 1 188 -1 290 343 0 0 chrX 6531814 6531992 -170442148 + (TAGA)n Simple_repeat Simple_repeat 1 178 0 * 341 308 0 0 chrX 6531861 6531994 -170442146 + (CATATA)n Simple_repeat Simple_repeat 6 138 0 589 63 13 0 chrX 6532435 6532514 -170441626 - MADE1 DNA Mariner 0 80 1 191 227 0 0 chrX 6533263 6533307 -170440833 + MIR3 SINE MIR 162 205 -3 986 161 62 0 chrX 6533716 6533908 -170440232 + MER20 DNA MER1_type 2 205 -14 2810 127 8 20 chrX 6534207 6534695 -170439445 + L1MA8 LINE L1 5800 6281 -10 1117 281 200 13 chrX 6534941 6535396 -170438744 - L2 LINE L2 -697 2617 2078 1833 128 55 27 chrX 6535612 6535941 -170438199 + MER1B DNA MER1_type 1 338 -1 2131 72 17 3 chrX 6536172 6536464 -170437676 - L1PA13 LINE L1 0 6163 5868 703 65 0 0 chrX 6536464 6536557 -170437583 + L1PA13 LINE L1 5788 5880 -283 234 350 77 26 chrX 6536688 6536805 -170437335 - MER5A DNA MER1_type -5 184 62 709 309 100 54 chrX 6537321 6537852 -170436288 - L2 LINE L2 -1 3312 2735 666 243 51 6 chrX 6537902 6538079 -170436061 + MIR SINE MIR 9 193 -69 532 397 28 14 chrX 6538120 6538410 -170435730 - L2 LINE L2 -610 2704 2411 369 333 24 19 chrX 6538514 6538721 -170435419 - L2 LINE L2 -908 2406 2199 22 0 0 0 chrX 6539813 6539835 -170434305 + AT_rich Low_complexity Low_complexity 1 22 0 2647 159 98 23 chrX 6540525 6540944 -170433196 - L1MB7 LINE L1 -279 5905 5428 1890 148 0 30 chrX 6540944 6541242 -170432898 - AluJb SINE Alu -10 302 14 2647 159 98 23 chrX 6541242 6541473 -170432667 - L1MB7 LINE L1 -756 5428 5216 180 295 62 54 chrX 6542339 6542451 -170431689 - MIR3 SINE MIR -14 194 82 509 180 86 23 chrX 6544537 6544665 -170429475 + MIR SINE MIR 127 262 0 433 100 50 0 chrX 6545745 6545825 -170428315 - L1PB4 LINE L1 0 6156 6073 302 213 0 0 chrX 6545952 6546013 -170428127 - MER20 DNA MER1_type -157 62 2 2220 104 7 10 chrX 6546039 6546347 -170427793 + AluSc SINE Alu 1 307 -2 2333 107 0 0 chrX 6546735 6547034 -170427106 + AluSx SINE Alu 1 299 -13 357 333 57 14 chrX 6547236 6547377 -170426763 - MIR SINE MIR -108 154 8 1055 172 29 10 chrX 6548854 6549058 -170425082 + MER3 DNA MER1_type 1 208 -1 286 287 147 13 chrX 6549269 6549426 -170424714 + L2 LINE L2 3120 3297 -16 21 0 0 0 chrX 6550729 6550750 -170423390 + AT_rich Low_complexity Low_complexity 1 21 0 250 304 155 41 chrX 6550783 6550977 -170423163 - MIR SINE MIR -34 228 13 198 368 53 18 chrX 6551213 6551327 -170422813 - MIR SINE MIR -110 152 35 442 324 52 6 chrX 6553044 6553217 -170420923 - MIR SINE MIR -10 252 72 508 252 19 56 chrX 6553634 6553860 -170420280 - MIR SINE MIR -50 212 2 226 330 0 50 chrX 6553907 6554007 -170420133 - MIR3 SINE MIR -2 206 112 274 296 28 0 chrX 6554353 6554424 -170419716 + polypurine Low_complexity Low_complexity 4 76 0 187 173 200 0 chrX 6555457 6555532 -170418608 - L2 LINE L2 -785 2529 2440 392 302 7 50 chrX 6556012 6556151 -170417989 + MER5A DNA MER1_type 29 161 -28 203 0 37 0 chrX 6557259 6557286 -170416854 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 25 0 0 0 chrX 6557396 6557421 -170416719 + AT_rich Low_complexity Low_complexity 1 25 0 467 235 0 0 chrX 6558995 6559093 -170415047 + MIR SINE MIR 96 193 -69 220 309 0 15 chrX 6560770 6560838 -170413302 + L2 LINE L2 3246 3312 -1 2224 111 0 0 chrX 6561122 6561420 -170412720 - AluSg SINE Alu -12 298 1 2187 148 11 3 chrX 6562263 6562628 -170411512 + L1MB7 LINE L1 5798 6165 -19 180 171 29 0 chrX 6562817 6562852 -170411288 - MIR SINE MIR -34 228 193 * 318 311 211 36 chrX 6562836 6563248 -170410892 - L2 LINE L2 -7 3306 2823 1065 192 32 46 chrX 6564029 6564310 -170409830 - L1MB8 LINE L1 -3 6175 5899 696 188 111 68 chrX 6564341 6564548 -170409592 - MER20 DNA MER1_type -1 218 3 771 41 0 0 chrX 6564824 6564921 -170409219 + L1PB1 LINE L1 6053 6149 -2 1269 198 5 0 chrX 6566171 6566388 -170407752 + MER20 DNA MER1_type 2 219 0 1025 158 10 46 chrX 6566773 6566969 -170407171 + MER5A DNA MER1_type 1 189 0 194 278 41 82 chrX 6566974 6567071 -170407069 - MER5A DNA MER1_type -24 165 73 2062 177 64 48 chrX 6567163 6567660 -170406480 - MLT1D LTR MaLR 0 505 1 192 280 20 110 chrX 6567702 6567802 -170406338 - L3 LINE CR1 -25 1552 1462 * 265 349 31 23 chrX 6567791 6567920 -170406220 + L2 LINE L2 3177 3306 -7 321 274 28 28 chrX 6568007 6568113 -170406027 + MIR SINE MIR 110 215 -47 353 274 0 19 chrX 6568284 6568390 -170405750 - MER5B DNA MER1_type 0 178 75 368 290 32 24 chrX 6568390 6568514 -170405626 - MER5B DNA MER1_type 0 178 54 181 302 16 16 chrX 6568701 6568764 -170405376 + L2 LINE L2 3204 3266 -6 458 294 18 0 chrX 6569476 6569639 -170404501 - L1MC4a LINE L1 -1911 5897 5732 41 21 0 0 chrX 6569668 6569716 -170404424 + AT_rich Low_complexity Low_complexity 1 48 0 1770 226 57 11 chrX 6569723 6570201 -170403939 - L1ME3A LINE L1 -20 6150 5651 301 239 92 0 chrX 6570220 6570329 -170403811 - L1MC4a LINE L1 -2081 5727 5609 1068 162 0 6 chrX 6570359 6570526 -170403614 - FRAM SINE Alu -10 166 1 1100 180 33 0 chrX 6570972 6571183 -170402957 - MER20 DNA MER1_type 0 219 2 681 237 60 44 chrX 6571184 6571433 -170402707 + MIR SINE MIR 8 260 -2 22 0 0 0 chrX 6571442 6571464 -170402676 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chrX 6572260 6572284 -170401856 + AT_rich Low_complexity Low_complexity 1 24 0 1780 202 81 28 chrX 6572516 6572983 -170401157 - MLT1D LTR MaLR -7 535 4 23 0 0 0 chrX 6573402 6573425 -170400715 + AT_rich Low_complexity Low_complexity 1 23 0 2861 147 31 13 chrX 6573701 6574245 -170399895 + L1MB7 LINE L1 5609 6162 -22 1619 66 14 0 chrX 6576290 6576503 -170397637 + L1PA10 LINE L1 5952 6167 -1 1061 153 6 0 chrX 6576626 6576803 -170397337 - MER58A DNA MER1_type -2 222 45 828 296 24 8 chrX 6577034 6577287 -170396853 + MIR SINE MIR 3 259 -3 34 0 0 0 chrX 6577806 6577840 -170396300 + AT_rich Low_complexity Low_complexity 1 34 0 385 277 106 0 chrX 6578110 6578251 -170395889 - MIR SINE MIR -102 160 5 605 234 10 83 chrX 6578763 6578869 -170395271 - MER5B DNA MER1_type 0 178 91 819 255 5 0 chrX 6578869 6579077 -170395063 - MER3 DNA MER1_type 0 209 1 605 234 10 83 chrX 6579077 6579162 -170394978 - MER5B DNA MER1_type -87 91 1 646 260 6 40 chrX 6580900 6581073 -170393067 + MIR SINE MIR 5 171 -91 322 287 64 37 chrX 6582180 6582368 -170391772 - MLT1H LTR MaLR -249 300 108 684 264 0 0 chrX 6582454 6582617 -170391523 - MLT1J1 LTR MaLR -268 178 16 197 316 26 26 chrX 6582827 6582903 -170391237 - L2 LINE L2 -527 2787 2712 844 287 0 0 chrX 6583641 6583836 -170390304 + MIR SINE MIR 51 245 -17 315 49 0 0 chrX 6585011 6585052 -170389088 + (TC)n Simple_repeat Simple_repeat 1 41 0 * 456 99 0 0 chrX 6585051 6585122 -170389018 + (CA)n Simple_repeat Simple_repeat 1 71 0 21 0 0 0 chrX 6585339 6585360 -170388780 + AT_rich Low_complexity Low_complexity 1 21 0 1036 224 25 8 chrX 6586105 6586342 -170387798 + MIR SINE MIR 11 251 -11 720 196 27 91 chrX 6587010 6587229 -170386911 - MER58A DNA MER1_type 0 224 20 654 263 0 31 chrX 6587254 6587414 -170386726 - MIR SINE MIR -107 155 1 203 323 140 11 chrX 6587430 6587616 -170386524 + L2 LINE L2 2953 3162 -151 2337 175 21 14 chrX 6587669 6588092 -170386048 - MSTB LTR MaLR 0 426 1 222 336 35 0 chrX 6588193 6588306 -170385834 - MIR SINE MIR -56 206 90 208 286 20 92 chrX 6588345 6588443 -170385697 - MER5B DNA MER1_type 0 178 88 23 68 0 0 chrX 6589059 6589103 -170385037 + AT_rich Low_complexity Low_complexity 1 44 0 931 219 10 0 chrX 6589170 6589371 -170384769 - MER20 DNA MER1_type 0 219 17 406 320 0 0 chrX 6590082 6590182 -170383958 - L2 LINE L2 -13 3300 3201 1168 214 72 3 chrX 6590292 6590582 -170383558 + MER58B DNA MER1_type 1 310 -31 1843 175 140 37 chrX 6590809 6591267 -170382873 - MLT1D LTR MaLR 0 505 1 261 226 19 0 chrX 6591685 6591738 -170382402 - MER5B DNA MER1_type 0 178 125 3730 80 11 7 chrX 6591741 6592280 -170381860 + L1MA1 LINE L1 5762 6302 0 441 324 161 51 chrX 6592660 6593514 -170380626 + L2 LINE L2 2342 3271 -1 1017 219 23 5 chrX 6593591 6593806 -170380334 + MER58A DNA MER1_type 5 223 -1 21 0 0 0 chrX 6593967 6593988 -170380152 + AT_rich Low_complexity Low_complexity 1 21 0 348 306 69 12 chrX 6594356 6594529 -170379611 + L2 LINE L2 3019 3201 -112 2266 104 3 0 chrX 6594718 6595015 -170379125 - AluSq SINE Alu -13 300 3 326 354 0 39 chrX 6595497 6595627 -170378513 + MIR SINE MIR 13 137 -125 183 146 0 0 chrX 6595685 6595726 -170378414 + (TTATA)n Simple_repeat Simple_repeat 2 42 0 735 145 88 36 chrX 6595800 6595993 -170378147 + L1MA5A LINE L1 6093 6295 -2 198 0 0 0 chrX 6596386 6596408 -170377732 + (T)n Simple_repeat Simple_repeat 1 22 0 2266 107 0 17 chrX 6597206 6597505 -170376635 - AluSc SINE Alu -15 294 1 191 204 20 0 chrX 6597784 6597833 -170376307 + (CATATA)n Simple_repeat Simple_repeat 1 50 0 903 182 11 32 chrX 6597842 6598029 -170376111 + MER20 DNA MER1_type 3 185 -34 183 339 25 25 chrX 6598120 6598238 -170375902 + MIR3 SINE MIR 9 126 -82 1078 300 96 43 chrX 6599641 6600228 -170373912 - L2 LINE L2 -1630 1684 1057 2523 174 22 24 chrX 6600228 6600734 -170373406 + MLT1D LTR MaLR 1 505 0 1078 300 96 43 chrX 6600734 6600800 -170373340 - L2 LINE L2 -2257 1057 996 542 242 150 55 chrX 6601402 6601695 -170372445 + L1MC/D LINE L1 5282 5596 -669 6278 91 3 0 chrX 6601695 6602745 -170371395 - L1PB1 LINE L1 -1 6150 5104 542 242 150 55 chrX 6602745 6602822 -170371318 + L1MC/D LINE L1 5596 5664 -601 474 192 20 68 chrX 6602843 6602989 -170371151 - MLT1J2 LTR MaLR -48 402 264 825 196 131 5 chrX 6603458 6603657 -170370483 + MER58A DNA MER1_type 1 224 0 297 279 0 0 chrX 6604802 6604888 -170369252 + MIR SINE MIR 163 248 -14 207 100 0 0 chrX 6604895 6604925 -170369215 + (CAT)n Simple_repeat Simple_repeat 1 30 0 226 210 0 65 chrX 6605304 6605366 -170368774 + MER112 DNA MER1_type 17 74 -186 1005 211 33 9 chrX 6606710 6606923 -170367217 + MER58A DNA MER1_type 6 223 -1 1681 144 24 94 chrX 6607093 6607467 -170366673 - Tigger3(Golem) DNA MER2_type -1 3028 1 232 273 81 20 chrX 6607686 6607785 -170366355 - MLT1L LTR MaLR -366 249 145 242 242 0 76 chrX 6608005 6608071 -170366069 + L2 LINE L2 3206 3266 -6 426 39 0 0 chrX 6609541 6609593 -170364547 + (CA)n Simple_repeat Simple_repeat 2 53 0 1722 140 15 4 chrX 6610075 6610165 -170363975 - AluJb SINE Alu -44 268 181 207 0 0 0 chrX 6610165 6610188 -170363952 + (CACCC)n Simple_repeat Simple_repeat 3 25 0 1722 140 15 4 chrX 6610188 6610362 -170363778 - AluJb SINE Alu -131 181 1 248 357 83 0 chrX 6610387 6610471 -170363669 + L2 LINE L2 3133 3223 -49 21 36 0 0 chrX 6611331 6611359 -170362781 + AT_rich Low_complexity Low_complexity 1 28 0 322 282 0 0 chrX 6611771 6611849 -170362291 - L3 LINE CR1 -64 1513 1436 802 176 10 137 chrX 6611864 6612171 -170361969 - L1MC3 LINE L1 -15 7770 7503 614 197 131 27 chrX 6612188 6612371 -170361769 - MLT1F1 LTR MaLR -50 517 316 291 285 90 50 chrX 6612519 6612719 -170361421 - L3 LINE CR1 -223 1354 1147 980 211 33 5 chrX 6613057 6613270 -170360870 + MER20 DNA MER1_type 1 219 0 378 215 82 30 chrX 6613637 6613772 -170360368 - Charlie8 DNA MER1_type -2220 197 56 337 302 31 16 chrX 6614322 6614451 -170359689 + MIR SINE MIR 49 179 -83 191 299 58 0 chrX 6614550 6614637 -170359503 + MIR SINE MIR 54 145 -63 2497 102 19 13 chrX 6614680 6615053 -170359087 + THE1C LTR MaLR 1 375 0 6386 98 42 59 chrX 6615054 6616137 -170358003 + THE1C-int LTR MaLR 2 1066 -514 1707 177 9 14 chrX 6616132 6616482 -170357658 - L1MC2 LINE L1 -408 5936 5589 * 219 36 0 0 chrX 6616604 6616632 -170357508 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 2271 99 0 37 chrX 6618462 6618786 -170355354 - AluSx SINE Alu 0 312 1 1655 160 57 3 chrX 6618827 6619159 -170354981 + L1MA4 LINE L1 5945 6294 -6 189 314 161 8 chrX 6619178 6619296 -170354844 - MIR SINE MIR -2 260 125 1075 159 29 10 chrX 6620142 6620349 -170353791 + L1MC1 LINE L1 6113 6323 -10 420 222 21 14 chrX 6620370 6620514 -170353626 + (CATA)n Simple_repeat Simple_repeat 1 145 0 2395 81 0 13 chrX 6620629 6620936 -170353204 + AluSc SINE Alu 1 303 -6 207 100 0 0 chrX 6623311 6623341 -170350799 + (A)n Simple_repeat Simple_repeat 1 30 0 3251 48 22 0 chrX 6624706 6625123 -170349017 + L1PA5 LINE L1 5728 6153 -1 609 242 12 6 chrX 6625823 6625984 -170348156 + L2 LINE L2 678 839 -2475 204 247 65 13 chrX 6626059 6626136 -170348004 - MIR SINE MIR -49 213 133 299 272 22 122 chrX 6626497 6626677 -170347463 - MIR SINE MIR -98 164 3 514 244 34 28 chrX 6627210 6627386 -170346754 + MER5B DNA MER1_type 2 178 0 620 201 169 13 chrX 6627489 6627643 -170346497 + MER5A DNA MER1_type 9 186 -3 2205 89 0 0 chrX 6627678 6627948 -170346192 + AluSg SINE Alu 36 305 -5 3659 30 0 2 chrX 6628214 6628650 -170345490 - L1PA4 LINE L1 -3 6152 5718 180 174 23 198 chrX 6629320 6629406 -170344734 + MER5B DNA MER1_type 64 134 -44 213 39 0 0 chrX 6629685 6629711 -170344429 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 2023 103 0 0 chrX 6629715 6629977 -170344163 - AluSx SINE Alu -29 283 22 940 275 0 32 chrX 6631469 6631720 -170342420 + MIR SINE MIR 18 260 -2 189 371 8 24 chrX 6632222 6632346 -170341794 + L2 LINE L2 2362 2483 -831 236 299 76 42 chrX 6632540 6632684 -170341456 + MLT1K LTR MaLR 125 273 -315 356 270 88 22 chrX 6632746 6632883 -170341257 + MLT1K LTR MaLR 401 546 -42 1821 262 135 34 chrX 6633175 6634225 -170339915 - L2 LINE L2 -1 3312 2148 2485 59 0 26 chrX 6634566 6634871 -170339269 + AluY SINE Alu 1 297 -14 294 356 32 23 chrX 6635816 6635994 -170338146 + MIR SINE MIR 17 196 -66 239 208 42 0 chrX 6636392 6636440 -170337700 + L2 LINE L2 3189 3238 -75 286 290 9 37 chrX 6638145 6638252 -170335888 - L2 LINE L2 -8 3305 3202 733 304 30 23 chrX 6639578 6639844 -170334296 - L2 LINE L2 -4 3309 3042 450 333 117 9 chrX 6639904 6640135 -170334005 - MIR SINE MIR 0 262 7 456 221 77 61 chrX 6640150 6640331 -170333809 + MER5A DNA MER1_type 4 187 -2 191 365 65 9 chrX 6641116 6641223 -170332917 - MIR3 SINE MIR -4 204 92 * 195 348 43 0 chrX 6641208 6641277 -170332863 - MIR SINE MIR -171 91 20 516 260 58 98 chrX 6641509 6641905 -170332235 - L2 LINE L2 0 3313 2934 185 218 128 64 chrX 6642292 6642370 -170331770 - L2 LINE L2 -2 3311 3229 489 272 25 4 chrX 6642395 6642606 -170331534 + MLT1J2 LTR MaLR 35 332 -118 192 307 86 36 chrX 6642738 6642878 -170331262 - MIR SINE MIR -51 211 65 181 370 14 83 chrX 6643259 6643535 -170330605 - L2 LINE L2 -12 3260 3004 246 239 98 65 chrX 6643541 6643725 -170330415 + MARNA DNA Mariner 364 553 -33 249 182 0 0 chrX 6644387 6644442 -170329698 + (TCCA)n Simple_repeat Simple_repeat 4 58 0 206 303 181 61 chrX 6645199 6645559 -170328581 - L2 LINE L2 -1218 2096 1694 482 293 103 43 chrX 6645563 6646047 -170328093 - L1ME4a LINE L1 -16 6105 5593 1265 161 5 27 chrX 6646112 6646335 -170327805 - MER20 DNA MER1_type -1 218 1 180 125 0 0 chrX 6647990 6648022 -170326118 + (CAAAA)n Simple_repeat Simple_repeat 3 34 0 182 229 0 0 chrX 6648181 6648216 -170325924 - MIR SINE MIR -111 151 117 229 324 0 0 chrX 6648626 6648700 -170325440 + L2 LINE L2 2991 3064 -208 1131 88 6 17 chrX 6648905 6649086 -170325054 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 2450 54 0 13 chrX 6649091 6649389 -170324751 - AluY SINE Alu -17 294 1 252 339 8 33 chrX 6649886 6650007 -170324133 - MIR SINE MIR -81 181 64 1227 128 13 66 chrX 6650015 6650241 -170323899 + MER20 DNA MER1_type 6 219 0 449 260 0 68 chrX 6650384 6650530 -170323610 - MER91B DNA MER1_type -53 137 2 250 316 71 0 chrX 6650530 6650628 -170323512 + MIR SINE MIR 81 185 -77 783 93 0 0 chrX 6650631 6650749 -170323391 + (TA)n Simple_repeat Simple_repeat 2 119 0 364 216 20 0 chrX 6654027 6654129 -170320011 + (TA)n Simple_repeat Simple_repeat 2 105 0 225 98 0 0 chrX 6654135 6654176 -170319964 + LTR66 LTR ERVL 399 439 -171 320 284 42 0 chrX 6654763 6654858 -170319282 - L2 LINE L2 0 3313 3215 183 259 179 36 chrX 6655358 6655470 -170318670 + MIR SINE MIR 79 206 -56 577 252 57 102 chrX 6656887 6657022 -170317118 - L1ME4a LINE L1 -7 6114 5974 1543 195 68 0 chrX 6657022 6657314 -170316826 - AluJb SINE Alu 0 312 1 577 252 57 102 chrX 6657314 6657495 -170316645 - L1ME4a LINE L1 -147 5974 5827 1057 100 0 0 chrX 6657495 6657635 -170316505 + L1PB1 LINE L1 6012 6151 0 577 252 57 102 chrX 6657635 6657825 -170316315 - L1ME4a LINE L1 -294 5827 5630 731 258 48 22 chrX 6657856 6658255 -170315885 - L1MC5 LINE L1 -241 7720 7252 475 237 168 56 chrX 6658396 6658628 -170315512 + MLT1K LTR MaLR 331 588 0 813 148 0 37 chrX 6658651 6658786 -170315354 - FLAM_C SINE Alu -13 130 1 408 257 67 0 chrX 6659075 6659180 -170314960 - MIR SINE MIR -27 235 124 1796 156 35 0 chrX 6659253 6659541 -170314599 - MER7A DNA MER2_type -48 298 3 402 21 0 0 chrX 6659541 6659588 -170314552 + (TG)n Simple_repeat Simple_repeat 2 48 0 345 251 128 56 chrX 6659741 6659936 -170314204 + L1ME4a LINE L1 5910 6118 -3 1608 255 68 34 chrX 6661262 6661736 -170312404 - LTR16C LTR ERVL -1 490 1 1693 161 58 10 chrX 6662162 6662454 -170311686 + AluJb SINE Alu 1 306 -6 219 200 67 67 chrX 6662732 6662822 -170311318 - L2 LINE L2 -41 3231 3142 357 326 34 71 chrX 6663635 6663929 -170310211 - L2 LINE L2 0 3272 2990 384 181 0 0 chrX 6664859 6664942 -170309198 + (TA)n Simple_repeat Simple_repeat 1 83 0 407 36 107 0 chrX 6665513 6665569 -170308571 - MER58A DNA MER1_type -6 218 157 328 305 102 0 chrX 6665585 6665713 -170308427 + MER96 DNA MER1_type? 35 175 0 695 202 8 0 chrX 6665722 6665846 -170308294 - MER58A DNA MER1_type 0 161 37 828 337 121 27 chrX 6665866 6666782 -170307358 + L2 LINE L2 1612 2613 -701 23 33 0 0 chrX 6667273 6667303 -170306837 + AT_rich Low_complexity Low_complexity 1 30 0 371 295 72 29 chrX 6668781 6668920 -170305220 + MER5B DNA MER1_type 34 178 0 843 174 99 0 chrX 6668954 6669115 -170305025 + MER20 DNA MER1_type 40 216 -3 2275 107 0 0 chrX 6669476 6669774 -170304366 + AluSg SINE Alu 7 304 -6 1716 124 12 0 chrX 6669985 6670227 -170303913 + L1PA15 LINE L1 5917 6161 -4 2079 86 0 63 chrX 6670232 6670578 -170303562 + AluY SINE Alu 1 327 0 467 225 254 12 chrX 6671800 6671969 -170302171 + MIR SINE MIR 3 212 -50 373 234 68 27 chrX 6671984 6672148 -170301992 - L1MD1 LINE L1 -322 5799 5660 454 244 30 31 chrX 6673363 6673690 -170300450 - L1MD1 LINE L1 -219 5951 5654 919 222 6 11 chrX 6673697 6673877 -170300263 + MER5A DNA MER1_type 1 179 -10 258 309 79 8 chrX 6673903 6674029 -170300111 - L1MD1 LINE L1 -514 5656 5522 756 242 22 36 chrX 6675293 6675516 -170298624 + L1ME3 LINE L1 5940 6159 -3 524 320 69 5 chrX 6675709 6675912 -170298228 - MIR SINE MIR 0 262 47 2551 112 19 16 chrX 6675938 6676312 -170297828 - THE1C LTR MaLR 0 375 1 232 244 0 0 chrX 6676315 6676360 -170297780 + Tigger6 DNA MER2_type 1536 1580 -17 513 0 0 0 chrX 6676388 6676445 -170297695 + (TG)n Simple_repeat Simple_repeat 2 58 0 2170 120 27 0 chrX 6676928 6677228 -170296912 + AluSx SINE Alu 5 312 0 628 297 68 4 chrX 6677276 6677512 -170296628 + MIR SINE MIR 2 252 -10 278 273 40 30 chrX 6677659 6677758 -170296382 + Charlie2 DNA MER1_type 1 100 -2762 239 325 61 9 chrX 6678722 6678836 -170295304 + MIR3 SINE MIR 44 163 -45 187 189 54 0 chrX 6678847 6678884 -170295256 + L2 LINE L2 3265 3303 -10 247 365 126 25 chrX 6678910 6679356 -170294784 + L2 LINE L2 2175 2665 -649 1003 180 62 24 chrX 6679631 6679842 -170294298 - MER20 DNA MER1_type 0 219 1 221 191 21 0 chrX 6680350 6680397 -170293743 + (TGAA)n Simple_repeat Simple_repeat 4 51 0 896 145 8 8 chrX 6681595 6681726 -170292414 - FLAM_C SINE Alu -2 131 1 2050 167 57 18 chrX 6682894 6683277 -170290863 + MER77 LTR ERV1 2 399 -206 1971 144 0 10 chrX 6683545 6683843 -170290297 - AluSx SINE Alu -17 295 1 2408 49 3 29 chrX 6685621 6685928 -170288212 - AluY SINE Alu -12 299 1 2151 113 3 0 chrX 6685939 6686239 -170287901 - AluSg SINE Alu -9 301 1 39 22 0 0 chrX 6687190 6687236 -170286904 + AT_rich Low_complexity Low_complexity 1 46 0 3193 148 40 4 chrX 6687770 6688290 -170285850 + L1PB4 LINE L1 5614 6152 -4 243 0 0 0 chrX 6688656 6688683 -170285457 + (CA)n Simple_repeat Simple_repeat 1 27 0 1540 138 5 0 chrX 6690770 6690987 -170283153 + AluSx SINE Alu 1 218 -94 7589 52 9 0 chrX 6691113 6692783 -170281357 - L1PA7 LINE L1 0 6154 4477 3452 112 0 0 chrX 6692785 6693283 -170280857 - L1PA7 LINE L1 -2419 3727 3230 8390 14 0 0 chrX 6693287 6694679 -170279461 - L1PA2 LINE L1 -2 6153 4762 6842 37 0 0 chrX 6694679 6695498 -170278642 + L1P LINE L1 1636 2454 -3692 1459 117 4 0 chrX 6695496 6695726 -170278414 - L1PA7 LINE L1 -2919 3227 2997 * 1363 96 8 108 chrX 6696107 6696357 -170277783 - L1PA15 LINE L1 -6 6159 5935 383 268 168 35 chrX 6698866 6699235 -170274905 - L2 LINE L2 -2025 1289 872 442 251 45 8 chrX 6699253 6699380 -170274760 + MIR SINE MIR 2 126 -82 1334 180 0 16 chrX 6699623 6699868 -170274272 + AluJo SINE Alu 68 308 -4 824 216 75 9 chrX 6700073 6700286 -170273854 - MER96B DNA MER1_type? -1 416 190 880 102 8 0 chrX 6700326 6700444 -170273696 - AluJb SINE Alu -20 292 174 25 0 0 0 chrX 6700603 6700628 -170273512 + AT_rich Low_complexity Low_complexity 1 25 0 28 29 0 0 chrX 6701158 6701193 -170272947 + AT_rich Low_complexity Low_complexity 1 35 0 400 156 44 44 chrX 6703797 6703977 -170270163 + (TATATG)n Simple_repeat Simple_repeat 1 180 0 208 222 22 0 chrX 6703978 6704023 -170270117 + (TG)n Simple_repeat Simple_repeat 2 47 0 210 259 0 0 chrX 6704473 6704527 -170269613 + MIR SINE MIR 209 262 0 395 174 65 11 chrX 6705192 6705284 -170268856 - MER5A DNA MER1_type -1 188 92 731 228 0 0 chrX 6705306 6705442 -170268698 + MER45A DNA AcHobo 43 178 0 365 253 32 0 chrX 6705442 6705537 -170268603 - MER5A DNA MER1_type -90 99 2 421 307 113 18 chrX 6707606 6707810 -170266330 + MIR SINE MIR 21 247 -15 276 283 145 7 chrX 6707810 6707955 -170266185 + MIR SINE MIR 75 239 -23 214 250 239 0 chrX 6707972 6708060 -170266080 + MIR SINE MIR 147 255 -7 1078 167 78 29 chrX 6708231 6708613 -170265527 - MLT1D LTR MaLR -55 450 2 21 0 0 0 chrX 6709953 6709974 -170264166 + AT_rich Low_complexity Low_complexity 1 21 0 489 215 35 157 chrX 6710352 6710664 -170263476 - MLT1J2 LTR MaLR 0 450 177 1887 64 0 9 chrX 6710676 6710909 -170263231 - AluY SINE Alu -1 310 80 556 230 99 6 chrX 6710927 6711088 -170263052 - MLT1J2 LTR MaLR -274 176 1 29 47 0 0 chrX 6713066 6713109 -170261031 + AT_rich Low_complexity Low_complexity 1 43 0 28 29 0 0 chrX 6713452 6713487 -170260653 + AT_rich Low_complexity Low_complexity 1 35 0 2148 118 3 0 chrX 6714543 6714840 -170259300 - AluSx SINE Alu -14 298 1 287 188 25 88 chrX 6715828 6715908 -170258232 - MER81 DNA DNA 0 114 40 622 126 58 211 chrX 6715987 6716210 -170257930 - MER53 DNA DNA 0 189 1 282 320 103 0 chrX 6716933 6717030 -170257110 + L2 LINE L2 3163 3269 -3 421 297 103 26 chrX 6717444 6717640 -170256500 + MIR SINE MIR 41 250 -12 345 324 9 0 chrX 6717783 6717891 -170256249 - MIR SINE MIR -117 145 37 264 127 0 0 chrX 6718605 6718660 -170255480 + (TCCA)n Simple_repeat Simple_repeat 3 57 0 688 252 13 0 chrX 6718831 6718982 -170255158 + MER45A DNA AcHobo 26 178 0 225 235 0 44 chrX 6719029 6719097 -170255043 - MIR SINE MIR -57 151 87 2343 147 28 0 chrX 6719352 6719707 -170254433 + MLT1A1 LTR MaLR 1 365 0 1906 162 143 19 chrX 6720360 6720536 -170253604 + MLT1C LTR MaLR 1 154 -313 273 89 0 0 chrX 6720536 6720581 -170253559 + (CA)n Simple_repeat Simple_repeat 1 45 0 1906 162 143 19 chrX 6720581 6720817 -170253323 + MLT1C LTR MaLR 154 464 -3 880 199 21 27 chrX 6721298 6721484 -170252656 + MER5A DNA MER1_type 2 186 -3 2666 39 3 0 chrX 6722110 6722417 -170251723 - AluY SINE Alu -3 308 1 2449 142 43 10 chrX 6722440 6722855 -170251285 - L1MB8 LINE L1 -19 6159 5731 1917 165 0 0 chrX 6723253 6723544 -170250596 + AluJb SINE Alu 1 291 -21 1745 84 51 8 chrX 6724580 6724817 -170249323 - L1PA13 LINE L1 -14 6149 5903 21 0 0 0 chrX 6724880 6724901 -170249239 + AT_rich Low_complexity Low_complexity 1 21 0 1733 122 0 8 chrX 6725082 6725320 -170248820 + AluSq SINE Alu 27 262 -51 463 311 97 5 chrX 6725647 6725843 -170248297 - MIR SINE MIR -2 260 47 2496 116 31 6 chrX 6726167 6726521 -170247619 - THE1B LTR MaLR -1 363 1 2368 88 0 3 chrX 6727101 6727396 -170246744 + AluSg SINE Alu 1 294 -16 3507 56 16 70 chrX 6727462 6727946 -170246194 - L1PA7 LINE L1 -10 6144 5687 180 255 109 76 chrX 6730773 6730957 -170243183 - L2 LINE L2 -14 3258 3069 527 232 90 19 chrX 6731594 6731749 -170242391 + MER5A DNA MER1_type 23 188 -1 699 242 142 13 chrX 6731933 6732377 -170241763 + MLT1G LTR MaLR 32 576 -14 1790 202 83 83 chrX 6733024 6733544 -170240596 + MLT2B1 LTR ERVL 1 520 0 429 211 56 0 chrX 6734435 6734525 -170239615 - MER20 DNA MER1_type 0 219 125 495 283 92 0 chrX 6734719 6734903 -170239237 + MIR SINE MIR 14 214 -48 826 70 0 0 chrX 6734931 6735031 -170239109 + HY3 scRNA scRNA 1 100 -1 555 169 7 110 chrX 6735214 6735350 -170238790 + MER58B DNA MER1_type 220 341 0 226 125 0 0 chrX 6735399 6735431 -170238709 - MER58A DNA MER1_type -39 68 37 242 302 194 35 chrX 6735460 6735718 -170238422 - L3 LINE CR1 -331 1246 948 263 377 70 15 chrX 6735811 6736010 -170238130 - L3 LINE CR1 -1125 452 243 320 232 182 20 chrX 6737640 6737739 -170236401 + MIR SINE MIR 61 175 -87 1100 151 98 34 chrX 6738161 6738366 -170235774 - MER20 DNA MER1_type -1 218 1 393 270 119 19 chrX 6738419 6738578 -170235562 - MIR SINE MIR -53 209 35 1640 156 32 7 chrX 6738637 6738919 -170235221 - AluJb SINE Alu -23 289 1 225 0 0 0 chrX 6739744 6739769 -170234371 + (CCG)n Simple_repeat Simple_repeat 2 26 0 925 195 127 0 chrX 6740259 6740495 -170233645 + Charlie4a DNA MER1_type 74 339 -169 820 284 30 30 chrX 6740525 6740828 -170233312 + LTR16A LTR ERVL 57 359 -91 642 216 51 81 chrX 6743351 6743587 -170230553 - L2 LINE L2 -1 3312 3084 399 301 168 0 chrX 6743609 6743752 -170230388 + MER5A DNA MER1_type 18 184 -5 651 301 119 10 chrX 6743763 6744086 -170230054 - L2 LINE L2 -244 3069 2711 2144 128 0 0 chrX 6744561 6744851 -170229289 + AluSg SINE Alu 1 290 -20 1062 221 9 27 chrX 6745240 6745462 -170228678 + MER20 DNA MER1_type 1 218 -1 280 339 67 0 chrX 6746253 6746433 -170227707 - L2 LINE L2 -934 2380 2189 940 261 25 40 chrX 6746942 6747340 -170226800 - L1MC4a LINE L1 -1959 5849 5461 2264 153 51 36 chrX 6747614 6748064 -170226076 + MSTB2 LTR MaLR 1 457 0 323 266 94 66 chrX 6748143 6748225 -170225915 - L1MC4a LINE L1 -1901 4245 4167 2387 87 0 37 chrX 6748225 6748548 -170225592 - AluSq SINE Alu -2 311 1 323 266 94 66 chrX 6748548 6748751 -170225389 - L1MC4a LINE L1 -1979 4167 3952 2173 104 0 20 chrX 6750955 6751253 -170222887 + AluSx SINE Alu 1 292 -20 309 296 30 15 chrX 6751570 6751702 -170222438 - MLT1K LTR MaLR 0 588 455 272 321 0 0 chrX 6751779 6751863 -170222277 - MLT1K LTR MaLR -346 242 159 240 300 70 46 chrX 6752706 6752861 -170221279 + MIR SINE MIR 20 148 -60 991 197 61 9 chrX 6752883 6753096 -170221044 - MER58A DNA MER1_type 0 224 1 1242 174 97 74 chrX 6753187 6753567 -170220573 + MLT1B LTR MaLR 2 390 0 27 87 0 0 chrX 6753635 6753704 -170220436 + AT_rich Low_complexity Low_complexity 1 69 0 335 258 30 90 chrX 6754116 6754283 -170219857 - L2 LINE L2 -38 3275 3119 2190 161 3 0 chrX 6754526 6754917 -170219223 - L1MC3 LINE L1 -10 7775 7384 527 245 13 14 chrX 6754954 6755103 -170219037 - MIR SINE MIR -67 141 17 197 169 92 62 chrX 6755357 6755422 -170218718 - MER5A DNA MER1_type -1 188 122 246 179 357 0 chrX 6755423 6755507 -170218633 + MER81 DNA DNA 1 114 0 271 216 27 54 chrX 6755529 6755603 -170218537 + MER5A DNA MER1_type 117 188 -1 181 382 136 9 chrX 6755606 6755716 -170218424 + L3b LINE CR1 1399 1522 -61 585 187 32 8 chrX 6755883 6756006 -170218134 + MER5B DNA MER1_type 3 128 -50 1172 177 177 0 chrX 6756035 6756362 -170217778 - MER3 DNA MER1_type 0 2620 2236 350 246 79 0 chrX 6756367 6756481 -170217659 - MER3 DNA MER1_type -41 168 46 270 235 210 0 chrX 6756546 6756627 -170217513 - MER5A DNA MER1_type -83 106 9 301 295 32 0 chrX 6756755 6756850 -170217290 + (TATATG)n Simple_repeat Simple_repeat 2 99 0 2203 108 7 0 chrX 6757584 6757881 -170216259 + AluSx SINE Alu 1 299 -13 280 277 69 0 chrX 6758347 6758448 -170215692 - MIR SINE MIR 0 262 155 1559 202 42 18 chrX 6758449 6758900 -170215240 - LTR37B LTR ERV1 -1 467 6 336 257 140 15 chrX 6758906 6759042 -170215098 - MIR SINE MIR -106 156 4 2055 269 44 12 chrX 6759963 6760605 -170213535 + L1MEc LINE L1 36 697 -5699 2018 260 57 36 chrX 6760616 6761186 -170212954 + L1MEc LINE L1 996 1552 -4844 189 74 0 0 chrX 6761186 6761213 -170212927 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2018 260 57 36 chrX 6761213 6761503 -170212637 + L1MEc LINE L1 1552 1882 -4514 2177 81 7 7 chrX 6761503 6761799 -170212341 + L1PA7 LINE L1 5857 6152 -2 2018 260 57 36 chrX 6761799 6761932 -170212208 + L1MEc LINE L1 1882 2011 -4385 4786 168 8 4 chrX 6761940 6762871 -170211269 - L1PA14 LINE L1 -816 5330 4397 5662 82 7 4 chrX 6762872 6763689 -170210451 + L1PA14 LINE L1 5342 6161 0 1647 221 46 7 chrX 6763696 6764157 -170209983 + L1MEc LINE L1 2013 2491 -3905 327 135 19 0 chrX 6764173 6764225 -170209915 + MLT1E1 LTR MaLR 1 53 -601 300 267 42 33 chrX 6764225 6764345 -170209795 + L1MC4 LINE L1 7639 7759 -283 315 231 150 54 chrX 6764396 6764656 -170209484 + L1MC4 LINE L1 7741 8025 -17 27 0 0 0 chrX 6764826 6764853 -170209287 + AT_rich Low_complexity Low_complexity 1 27 0 2190 114 0 13 chrX 6765006 6765348 -170208792 + AluSq SINE Alu 1 338 0 364 250 9 45 chrX 6765439 6765551 -170208589 - MER5A DNA MER1_type -35 154 47 198 347 31 41 chrX 6765570 6765668 -170208472 + MER5A DNA MER1_type 93 189 0 306 0 0 0 chrX 6765779 6765813 -170208327 + (TG)n Simple_repeat Simple_repeat 2 35 0 255 61 0 0 chrX 6767591 6767624 -170206516 + (T)n Simple_repeat Simple_repeat 1 33 0 992 231 9 18 chrX 6767862 6768087 -170206053 + MER58A DNA MER1_type 2 224 0 36 0 0 0 chrX 6768646 6768682 -170205458 + AT_rich Low_complexity Low_complexity 1 36 0 533 64 13 0 chrX 6768909 6768987 -170205153 + (TCTA)n Simple_repeat Simple_repeat 4 82 0 308 148 16 0 chrX 6769721 6769782 -170204358 + CT-rich Low_complexity Low_complexity 3 64 0 1116 261 74 30 chrX 6771856 6772286 -170201854 - LTR16A LTR ERVL 0 450 2 2868 6 0 0 chrX 6772524 6772835 -170201305 - AluYa5 SINE Alu 0 311 1 457 311 164 15 chrX 6772865 6773267 -170200873 - LTR33 LTR ERVL -25 496 35 615 14 0 0 chrX 6773293 6773365 -170200775 + (GA)n Simple_repeat Simple_repeat 1 72 0 1021 276 31 29 chrX 6775006 6775439 -170198701 - L1MC4 LINE L1 -877 7016 6484 245 301 75 0 chrX 6775589 6775682 -170198458 + MIR SINE MIR 156 255 -7 234 156 0 0 chrX 6776008 6776053 -170198087 + (TG)n Simple_repeat Simple_repeat 2 46 0 332 259 26 9 chrX 6776063 6776179 -170197961 - L1M4 LINE L1 -1298 4848 4731 5298 174 39 57 chrX 6776565 6777280 -170196860 - L1MC3 LINE L1 -8 7777 7093 189 74 0 0 chrX 6777280 6777307 -170196833 + (TTTA)n Simple_repeat Simple_repeat 4 30 0 5298 174 39 57 chrX 6777307 6777847 -170196293 - L1MC3 LINE L1 -692 7093 6545 261 256 58 39 chrX 6777848 6778004 -170196136 + L1MC4a LINE L1 5576 5734 -2074 340 337 63 19 chrX 6778006 6778211 -170195929 + L1MC4a LINE L1 5707 5920 -1888 21 0 0 0 chrX 6779222 6779243 -170194897 + AT_rich Low_complexity Low_complexity 1 21 0 224 308 242 6 chrX 6779519 6779701 -170194439 + MIR SINE MIR 1 225 -37 2867 156 34 6 chrX 6779822 6780295 -170193845 - MER66B LTR ERV1 0 486 1 22 0 0 0 chrX 6781788 6781810 -170192330 + AT_rich Low_complexity Low_complexity 1 22 0 204 289 0 0 chrX 6782070 6782115 -170192025 + polypyrimidine Low_complexity Low_complexity 1 45 0 381 43 0 0 chrX 6782545 6782592 -170191548 + (CA)n Simple_repeat Simple_repeat 2 48 0 314 259 63 28 chrX 6782730 6782873 -170191267 - MLT1K LTR MaLR -9 579 432 209 214 0 0 chrX 6782881 6782923 -170191217 + (TCTA)n Simple_repeat Simple_repeat 1 42 0 2898 174 5 9 chrX 6782971 6783527 -170190613 - L1MB4 LINE L1 -2 6178 5625 527 347 34 5 chrX 6783930 6784308 -170189832 + L1ME3A LINE L1 5496 5884 -286 1814 139 0 23 chrX 6784744 6784921 -170189219 + L1PA16 LINE L1 5867 6036 -130 2054 106 70 25 chrX 6784921 6785280 -170188860 - THE1C LTR MaLR 0 375 1 1814 139 0 23 chrX 6785280 6785404 -170188736 + L1PA16 LINE L1 6036 6161 -5 812 192 99 0 chrX 6786719 6786891 -170187249 + MER5A DNA MER1_type 1 189 0 203 241 133 12 chrX 6787056 6787139 -170187001 - MIR SINE MIR -50 212 120 850 256 60 38 chrX 6787200 6787547 -170186593 + MLT1L LTR MaLR 37 391 -224 297 304 29 0 chrX 6787581 6787683 -170186457 + MLT1L LTR MaLR 496 600 -15 465 98 73 0 chrX 6787826 6787908 -170186232 + L1MC1 LINE L1 6246 6333 0 21 0 0 0 chrX 6787945 6787966 -170186174 + AT_rich Low_complexity Low_complexity 1 21 0 34 72 0 0 chrX 6788399 6788468 -170185672 + AT_rich Low_complexity Low_complexity 1 69 0 320 260 65 0 chrX 6788501 6788578 -170185562 + L2 LINE L2 3228 3309 -4 256 228 0 25 chrX 6788630 6788709 -170185431 - L1M4 LINE L1 -1486 4660 4584 231 274 24 0 chrX 6788762 6788846 -170185294 - L1ME LINE L1 -460 5661 5576 241 255 0 0 chrX 6788893 6788940 -170185200 + (ATG)n Simple_repeat Simple_repeat 2 48 0 536 278 159 0 chrX 6790510 6790661 -170183479 + MER5A DNA MER1_type 9 183 -6 2117 206 113 71 chrX 6791236 6791844 -170182296 - L1ME2 LINE L1 -6 6158 5502 727 150 8 31 chrX 6791844 6791971 -170182169 - FLAM_C SINE Alu -9 124 1 2117 206 113 71 chrX 6791971 6792208 -170181932 - L1ME2 LINE L1 -662 5502 5277 2775 127 29 0 chrX 6792378 6792794 -170181346 + MSTA LTR MaLR 1 428 0 699 304 28 33 chrX 6792814 6793205 -170180935 - L1MCc LINE L1 -6013 410 22 783 251 12 0 chrX 6793410 6793581 -170180559 + MIR SINE MIR 79 251 -11 4398 104 3 20 chrX 6793825 6794471 -170179669 + MER41B LTR ERV1 1 635 0 258 273 149 13 chrX 6794478 6794632 -170179508 + MLT1I LTR MaLR 12 186 -223 494 312 94 8 chrX 6794640 6794874 -170179266 + MLT1I LTR MaLR 152 405 -4 6028 26 1 0 chrX 6796115 6796817 -170177323 - L1PA4 LINE L1 -5 6150 5448 190 259 56 19 chrX 6797004 6797058 -170177082 + L2 LINE L2 3215 3270 -2 187 133 44 0 chrX 6797165 6797210 -170176930 + (TA)n Simple_repeat Simple_repeat 1 47 0 366 337 33 37 chrX 6797957 6798257 -170175883 + L2 LINE L2 2467 2765 -549 257 386 40 0 chrX 6798316 6798417 -170175723 + L2 LINE L2 3103 3207 -65 23 0 0 0 chrX 6798713 6798736 -170175404 + AT_rich Low_complexity Low_complexity 1 23 0 338 261 24 68 chrX 6799349 6799556 -170174584 + L1MC5 LINE L1 7720 7917 -44 2433 233 64 90 chrX 6799606 6800530 -170173610 + MER69 DNA AcHobo 14 913 -1613 7777 147 54 3 chrX 6800532 6801813 -170172327 + L1 LINE L1 16 1361 -6204 1489 186 20 20 chrX 6801824 6802222 -170171918 + L1 LINE L1 4501 4898 -2667 5767 184 41 11 chrX 6802228 6803389 -170170751 + L1MA3 LINE L1 12 1207 -6358 14500 161 27 18 chrX 6803390 6807493 -170166647 + L1MA3 LINE L1 3617 7724 0 363 78 0 0 chrX 6807543 6807594 -170166546 + (CA)n Simple_repeat Simple_repeat 2 52 0 472 244 67 107 chrX 6808528 6808798 -170165342 - MLT1J2 LTR MaLR -124 326 68 521 246 47 15 chrX 6809285 6809535 -170164605 - LTR16A LTR ERVL -7 443 144 333 316 165 0 chrX 6810027 6810160 -170163980 - L2 LINE L2 -1 3271 3117 1241 164 28 0 chrX 6810411 6810624 -170163516 - MER20 DNA MER1_type 0 219 1 269 248 143 56 chrX 6811507 6811668 -170162472 + MER5B DNA MER1_type 2 176 -2 1609 160 190 11 chrX 6812241 6812604 -170161536 + MSTA LTR MaLR 1 428 0 27 29 0 0 chrX 6814191 6814225 -170159915 + AT_rich Low_complexity Low_complexity 1 34 0 672 196 176 0 chrX 6815020 6815173 -170158967 + MIR SINE MIR 23 202 -60 436 275 53 23 chrX 6815242 6815373 -170158767 + MER5A DNA MER1_type 26 160 -29 216 0 0 0 chrX 6815942 6815966 -170158174 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 8816 217 23 4 chrX 6816421 6816794 -170157346 - L1PA16 LINE L1 -6 6160 5796 4932 38 5 0 chrX 6816794 6817378 -170156762 - LTR14C LTR ERVK 0 587 1 8816 217 23 4 chrX 6817378 6819979 -170154161 - L1PA16 LINE L1 -370 5796 3146 1343 243 54 28 chrX 6820011 6820525 -170153615 + MLT1G1 LTR MaLR 1 595 0 202 250 0 0 chrX 6820845 6820885 -170153255 + (TATATG)n Simple_repeat Simple_repeat 5 44 0 385 324 90 33 chrX 6821087 6821420 -170152720 - L1M4 LINE L1 -1214 4932 4581 2432 253 129 83 chrX 6821427 6822495 -170151645 + HAL1 LINE L1 9 1027 -1480 2095 126 7 0 chrX 6822495 6822796 -170151344 + AluSx SINE Alu 3 305 -7 2432 253 129 83 chrX 6822796 6822916 -170151224 + HAL1 LINE L1 1027 1140 -1367 2251 78 7 3 chrX 6822916 6823209 -170150931 + AluY SINE Alu 1 294 -17 2432 253 129 83 chrX 6823209 6823760 -170150380 + HAL1 LINE L1 1140 1829 -678 3032 201 18 8 chrX 6823783 6824396 -170149744 + MLT1E1 LTR MaLR 3 621 -33 769 294 138 12 chrX 6824500 6824987 -170149153 + HAL1 LINE L1 1960 2507 0 293 264 139 21 chrX 6825588 6825732 -170148408 + MIR SINE MIR 61 221 -41 23 54 0 0 chrX 6825803 6825840 -170148300 + AT_rich Low_complexity Low_complexity 1 37 0 28942 78 8 163 chrX 6825874 6832781 -170141359 + L1PA16 LINE L1 12 5730 -436 4842 43 7 0 chrX 6832781 6833364 -170140776 + LTR14C LTR ERVK 1 587 0 28942 78 8 163 chrX 6833364 6833742 -170140398 + L1PA16 LINE L1 5730 6165 -1 8084 86 0 1 chrX 6834351 6836270 -170137870 + L1PA3 LINE L1 4231 6152 -3 204 83 56 0 chrX 6836273 6836309 -170137831 + A-rich Low_complexity Low_complexity 2 39 0 1293 258 131 52 chrX 6836354 6837287 -170136853 + HAL1 LINE L1 359 1364 -1143 1530 157 14 7 chrX 6837518 6837804 -170136336 + L1MB3 LINE L1 5894 6181 -2 365 276 6 39 chrX 6838631 6838787 -170135353 + L1ME1 LINE L1 5882 6032 -134 348 174 29 0 chrX 6838800 6838869 -170135271 - L1PB3 LINE L1 -10 6144 6074 430 258 102 88 chrX 6839017 6839437 -170134703 - L1ME4a LINE L1 -81 6040 5610 2286 108 0 0 chrX 6839437 6839733 -170134407 - AluSc SINE Alu -13 296 1 430 258 102 88 chrX 6839733 6839813 -170134327 - L1ME4a LINE L1 -511 5610 5533 4937 155 77 35 chrX 6840532 6841560 -170132580 + MER11C LTR ERVK 1 1071 0 526 319 26 35 chrX 6842751 6842983 -170131157 + MIR SINE MIR 12 241 -21 255 296 10 20 chrX 6843031 6843129 -170131011 + (TAG)n Simple_repeat Simple_repeat 2 98 0 366 23 0 0 chrX 6843191 6843234 -170130906 + (GA)n Simple_repeat Simple_repeat 1 43 0 260 256 26 0 chrX 6843939 6844017 -170130123 - MIR3 SINE MIR -5 203 124 1519 115 93 0 chrX 6844425 6844679 -170129461 + AluSx SINE Alu 38 312 0 420 257 104 64 chrX 6845093 6845342 -170128798 - MIR SINE MIR 0 262 4 25 99 0 0 chrX 6845414 6845495 -170128645 + AT_rich Low_complexity Low_complexity 1 81 0 201 259 17 35 chrX 6847121 6847179 -170126961 - L2 LINE L2 0 3272 3216 311 346 46 59 chrX 6848013 6848337 -170125803 - L2 LINE L2 -449 2865 2546 791 237 24 19 chrX 6848414 6848621 -170125519 + AluSq SINE Alu 6 213 -100 817 203 27 40 chrX 6848726 6848948 -170125192 - L1ME4a LINE L1 -624 5542 5324 1831 172 0 6 chrX 6849109 6849423 -170124717 - AluJo SINE Alu 0 312 1 716 289 84 52 chrX 6849594 6849846 -170124294 - L1ME4a LINE L1 -2575 3571 3328 2336 112 0 0 chrX 6849846 6850158 -170123982 - AluSx SINE Alu 0 312 1 716 289 84 52 chrX 6850158 6850515 -170123625 - L1ME4a LINE L1 -2818 3328 2943 1001 225 38 49 chrX 6850738 6851084 -170123056 + L1ME1 LINE L1 5813 6154 -12 232 281 36 14 chrX 6851162 6851301 -170122839 + L1P LINE L1 2349 2490 -3656 344 304 87 29 chrX 6851379 6851586 -170122554 + L1M4 LINE L1 2584 2802 -3344 22 0 0 0 chrX 6851611 6851633 -170122507 + AT_rich Low_complexity Low_complexity 1 22 0 245 295 72 14 chrX 6851689 6851828 -170122312 + HAL1 LINE L1 28 174 -2333 6153 45 5 2 chrX 6851938 6852785 -170121355 + L1P LINE L1 2903 3751 -2395 783 251 12 0 chrX 6853594 6853765 -170120375 + MIR SINE MIR 79 251 -11 3325 106 2 23 chrX 6854009 6854529 -170119611 + MER41B LTR ERV1 1 509 -126 215 322 11 11 chrX 6854774 6854864 -170119276 + CT-rich Low_complexity Low_complexity 1 90 0 358 241 60 0 chrX 6854928 6855011 -170119129 + MIR SINE MIR 136 223 -39 187 200 40 40 chrX 6855111 6855161 -170118979 + L3b LINE CR1 1277 1326 -257 21 0 0 0 chrX 6855442 6855463 -170118677 + AT_rich Low_complexity Low_complexity 1 21 0 248 315 102 35 chrX 6855620 6855817 -170118323 + MIR SINE MIR 13 222 -40 21 36 0 0 chrX 6856216 6856244 -170117896 + AT_rich Low_complexity Low_complexity 1 28 0 1259 150 47 29 chrX 6856734 6857046 -170117094 + L1MA4 LINE L1 6004 6294 -9 1008 142 18 18 chrX 6857609 6857827 -170116313 + L1P LINE L1 4851 5068 -1078 240 186 12 23 chrX 6858074 6858160 -170115980 + GA-rich Low_complexity Low_complexity 1 85 0 4083 153 23 3 chrX 6859304 6860075 -170114065 - L1 LINE L1 -1617 4923 4137 641 261 48 0 chrX 6860127 6860334 -170113806 + MER46C DNA MER2_type 113 329 -9 2091 119 0 33 chrX 6861003 6861306 -170112834 + AluSx SINE Alu 1 293 -19 23 68 0 0 chrX 6862921 6862965 -170111175 + AT_rich Low_complexity Low_complexity 1 44 0 409 262 96 44 chrX 6864129 6864484 -170109656 - L1MDa LINE L1 -3751 2789 2418 21 57 0 0 chrX 6864727 6864762 -170109378 + AT_rich Low_complexity Low_complexity 1 35 0 552 282 62 57 chrX 6864870 6865256 -170108884 - L1MDa LINE L1 -864 2037 1595 1728 164 94 110 chrX 6865263 6865764 -170108376 - L1MDa LINE L1 -6031 509 17 717 92 0 0 chrX 6866416 6866514 -170107626 - AluSc SINE Alu -211 98 1 1622 275 83 21 chrX 6866862 6867637 -170106503 - HAL1 LINE L1 -396 2111 1289 521 277 152 13 chrX 6867798 6868022 -170106118 + MLT1J2 LTR MaLR 196 450 0 280 235 45 115 chrX 6868022 6868379 -170105761 - HAL1 LINE L1 -1218 1289 958 254 305 126 29 chrX 6868652 6868826 -170105314 - HAL1 LINE L1 -1907 600 410 423 273 17 17 chrX 6869075 6869247 -170104893 - LTR16C LTR ERVL -57 434 263 237 306 116 75 chrX 6870266 6870707 -170103433 + L2 LINE L2 2814 3272 0 856 107 112 56 chrX 6870869 6871047 -170103093 + MER5A DNA MER1_type 2 189 0 896 201 40 0 chrX 6871974 6872173 -170101967 - MER3 DNA MER1_type -1 208 2 191 36 36 0 chrX 6873557 6873585 -170100555 + (TCC)n Simple_repeat Simple_repeat 3 31 0 586 298 30 0 chrX 6873954 6874085 -170100055 - MER91C DNA MER1_type 0 140 6 345 296 102 9 chrX 6874122 6874230 -170099910 - L2 LINE L2 0 3313 3196 187 324 152 19 chrX 6874723 6874828 -170099312 + L2 LINE L2 3145 3263 -9 1685 132 88 15 chrX 6876927 6877268 -170096872 - THE1C LTR MaLR -9 366 1 895 290 57 44 chrX 6877858 6878316 -170095824 - LTR16B LTR ERVL 0 464 1 3139 195 70 17 chrX 6878479 6879260 -170094880 - MER99 DNA DNA 0 828 6 750 208 3 15 chrX 6879646 6879954 -170094186 - MLT1A2 LTR MaLR 0 374 1 3234 139 17 7 chrX 6880323 6880897 -170093243 - L1MB7 LINE L1 -23 6161 5582 525 247 110 26 chrX 6880967 6881121 -170093019 - MER5B DNA MER1_type -8 170 4 580 306 52 6 chrX 6881414 6881587 -170092553 - MIR SINE MIR -80 182 2 211 241 24 72 chrX 6882375 6882458 -170091682 - L2 LINE L2 -84 3229 3151 482 225 220 17 chrX 6882703 6882876 -170091264 - MIR SINE MIR -25 237 30 257 73 0 24 chrX 6882940 6882981 -170091159 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 199 264 194 0 chrX 6882982 6883054 -170091086 - L2 LINE L2 -14 3299 3214 184 297 47 16 chrX 6883113 6883177 -170090963 - L2 LINE L2 -66 3206 3141 1877 153 7 0 chrX 6883486 6883761 -170090379 + AluJo SINE Alu 20 296 -16 285 318 77 12 chrX 6884826 6884996 -170089144 + L2 LINE L2 1668 1848 -1466 789 283 116 44 chrX 6885639 6885937 -170088203 + L2 LINE L2 1671 2007 -1307 1944 152 7 13 chrX 6885937 6886276 -170087864 + AluSx SINE Alu 1 312 0 789 283 116 44 chrX 6886276 6886383 -170087757 + L2 LINE L2 2007 2105 -1209 1411 169 4 4 chrX 6886400 6886661 -170087479 - L1MB5 LINE L1 0 6174 5914 330 273 13 0 chrX 6886701 6886778 -170087362 + L2 LINE L2 2574 2651 -663 252 0 0 0 chrX 6886804 6886832 -170087308 + (CA)n Simple_repeat Simple_repeat 2 29 0 808 151 78 0 chrX 6886912 6887091 -170087049 - L1MB5 LINE L1 -277 5907 5715 1447 227 127 55 chrX 6887092 6887604 -170086536 + L2 LINE L2 2103 2651 -663 1148 187 9 5 chrX 6888259 6888473 -170085667 + MER20 DNA MER1_type 1 215 -4 416 255 39 39 chrX 6889152 6889305 -170084835 - MIR3 SINE MIR -15 193 41 198 0 0 0 chrX 6890670 6890692 -170083448 + (A)n Simple_repeat Simple_repeat 1 22 0 21 57 0 0 chrX 6891211 6891246 -170082894 + AT_rich Low_complexity Low_complexity 1 35 0 288 200 12 50 chrX 6891666 6891746 -170082394 + L2 LINE L2 3231 3307 -6 193 373 124 17 chrX 6891844 6892021 -170082119 - L3b LINE CR1 -12 1571 1376 180 111 0 0 chrX 6892213 6892240 -170081900 + (CA)n Simple_repeat Simple_repeat 2 28 0 195 303 53 26 chrX 6892428 6892504 -170081636 + L2 LINE L2 2559 2636 -678 7468 32 4 0 chrX 6892749 6894258 -170079882 - L1PA5 LINE L1 -4 6150 4639 26 113 0 0 chrX 6894337 6894461 -170079679 + AT_rich Low_complexity Low_complexity 1 124 0 670 285 84 45 chrX 6895997 6896176 -170077964 + L2 LINE L2 2620 2791 -522 3569 121 21 8 chrX 6896176 6896696 -170077444 - MER1A DNA MER1_type 0 527 1 670 285 84 45 chrX 6896696 6897094 -170077046 + L2 LINE L2 2791 3216 -97 1080 199 14 5 chrX 6897260 6897476 -170076664 - MER58A DNA MER1_type 0 224 7 232 295 0 0 chrX 6898257 6898318 -170075822 - MIR SINE MIR -110 152 92 519 260 78 26 chrX 6898468 6898622 -170075518 + MER5B DNA MER1_type 17 178 0 1320 180 9 0 chrX 6898630 6898852 -170075288 - MER58A DNA MER1_type 0 224 1 353 343 108 5 chrX 6899058 6899271 -170074869 + MIR SINE MIR 12 246 -16 685 281 112 42 chrX 6899895 6900421 -170073719 + MLT1L LTR MaLR 5 567 -48 384 40 0 0 chrX 6902397 6902447 -170071693 + (CA)n Simple_repeat Simple_repeat 2 51 0 228 261 22 54 chrX 6902707 6902799 -170071341 - MIR SINE MIR -111 151 63 849 219 0 12 chrX 6903837 6904001 -170070139 - MER5A DNA MER1_type -22 167 6 452 18 18 0 chrX 6904880 6904937 -170069203 + (CA)n Simple_repeat Simple_repeat 2 59 0 2050 132 7 0 chrX 6904986 6905274 -170068866 + AluSx SINE Alu 1 290 -22 765 284 36 4 chrX 6906024 6906249 -170067891 - MIR SINE MIR -16 246 15 753 29 59 0 chrX 6906907 6907009 -170067131 + L1PA13 LINE L1 6052 6159 -4 647 310 67 65 chrX 6907050 6907421 -170066719 - L2 LINE L2 -5 3267 2896 260 285 200 15 chrX 6907420 6907550 -170066590 - MIR3 SINE MIR -38 170 17 * 276 276 60 141 chrX 6907592 6907671 -170066469 - MER91B DNA MER1_type 0 190 106 2267 106 0 13 chrX 6907671 6907983 -170066157 + AluSc SINE Alu 1 308 -1 276 276 60 141 chrX 6907983 6908102 -170066038 - MER91B DNA MER1_type -84 106 8 204 135 27 0 chrX 6908477 6908514 -170065626 + (TTG)n Simple_repeat Simple_repeat 2 39 0 290 252 108 7 chrX 6908699 6908838 -170065302 + MER103 DNA DNA 8 160 -6 243 0 0 0 chrX 6909338 6909365 -170064775 + (CA)n Simple_repeat Simple_repeat 2 28 0 436 267 86 28 chrX 6909438 6909703 -170064437 - L1ME LINE L1 -361 5809 5521 2286 123 17 57 chrX 6909778 6910183 -170063957 - MLT1B LTR MaLR -1 389 1 186 270 0 0 chrX 6910311 6910385 -170063755 + (TA)n Simple_repeat Simple_repeat 1 74 0 200 200 0 0 chrX 6910408 6910443 -170063697 + (CATATA)n Simple_repeat Simple_repeat 5 39 0 2236 141 88 13 chrX 6911593 6911991 -170062149 + MSTA LTR MaLR 1 428 0 330 349 40 7 chrX 6912776 6912925 -170061215 - MIR SINE MIR -14 248 95 1098 193 9 14 chrX 6913130 6913348 -170060792 - MER20 DNA MER1_type 0 219 3 40 49 0 0 chrX 6914861 6914922 -170059218 + AT_rich Low_complexity Low_complexity 1 61 0 1282 146 47 29 chrX 6915069 6915381 -170058759 + L1MA4 LINE L1 6004 6294 -9 7757 20 0 0 chrX 6915943 6917248 -170056892 + L1PA3 LINE L1 4851 6155 0 186 356 96 0 chrX 6917672 6917776 -170056364 - MIR SINE MIR -138 124 11 1171 261 35 61 chrX 6918085 6918626 -170055514 + L1ME3 LINE L1 5628 6154 -8 902 53 0 0 chrX 6918833 6918946 -170055194 + L1PA10 LINE L1 6056 6168 0 3921 16 0 0 chrX 6918957 6919405 -170054735 + L1PA2 LINE L1 5706 6153 -2 1154 161 22 40 chrX 6920107 6920330 -170053810 + MER20 DNA MER1_type 1 219 0 355 328 41 62 chrX 6920663 6920858 -170053282 + MIR3 SINE MIR 14 204 -4 21 0 0 0 chrX 6922793 6922814 -170051326 + AT_rich Low_complexity Low_complexity 1 21 0 195 100 0 0 chrX 6923281 6923311 -170050829 + (TCTCCC)n Simple_repeat Simple_repeat 3 32 0 1127 174 33 5 chrX 6923412 6923625 -170050515 - MER20 DNA MER1_type 0 219 1 12760 27 2 2 chrX 6923743 6926123 -170048017 + L1PA3 LINE L1 3789 6170 0 1357 48 0 0 chrX 6926517 6926684 -170047456 - L1PA4 LINE L1 -2 6153 5987 801 10 0 0 chrX 6926684 6926780 -170047360 + L1PA4 LINE L1 5897 5992 -163 181 269 154 0 chrX 6926788 6926866 -170047274 - L2 LINE L2 -1612 1702 1613 1725 208 46 0 chrX 6927134 6927523 -170046617 - MLT1E2 LTR MaLR -1 625 219 2348 144 8 0 chrX 6927529 6927891 -170046249 + MLT1A1 LTR MaLR 1 365 0 1183 198 28 0 chrX 6927965 6928213 -170045927 + L1MB7 LINE L1 5914 6168 -16 231 319 121 33 chrX 6928930 6929021 -170045119 - L2 LINE L2 0 3272 3174 189 147 0 0 chrX 6929620 6929654 -170044486 + (TA)n Simple_repeat Simple_repeat 1 34 0 261 0 0 0 chrX 6930066 6930095 -170044045 + (CAAAA)n Simple_repeat Simple_repeat 1 29 0 181 179 0 51 chrX 6930186 6930225 -170043915 + L3 LINE CR1 1291 1327 -250 967 58 14 0 chrX 6930569 6930703 -170043437 - L1MA4 LINE L1 -40 6260 6124 402 135 0 0 chrX 6930703 6930774 -170043366 + L1MA4 LINE L1 6227 6300 0 1976 171 131 11 chrX 6931186 6931637 -170042503 - MLT1D LTR MaLR 0 505 1 1816 181 7 7 chrX 6932066 6932365 -170041775 + AluJb SINE Alu 1 299 -13 308 272 70 63 chrX 6932860 6933091 -170041049 - MIR3 SINE MIR -29 233 4 22431 165 17 13 chrX 6933580 6940104 -170034036 - L1PA11 LINE L1 -2 7610 1 233 57 29 0 chrX 6941250 6941285 -170032855 + (GAAA)n Simple_repeat Simple_repeat 1 36 0 222 365 48 7 chrX 6941533 6941678 -170032462 + MIR SINE MIR 46 196 -66 672 292 27 0 chrX 6941992 6942177 -170031963 - MIR SINE MIR -58 204 15 1036 182 5 0 chrX 6943641 6943844 -170030296 - MER3 DNA MER1_type 0 209 6 281 284 136 11 chrX 6943870 6943958 -170030182 + L2 LINE L2 3174 3272 0 685 281 112 42 chrX 6944391 6944917 -170029223 - MLT1L LTR MaLR -48 567 5 353 343 108 5 chrX 6945541 6945754 -170028386 - MIR SINE MIR -16 246 12 1320 180 9 0 chrX 6945960 6946182 -170027958 + MER58A DNA MER1_type 1 224 0 519 260 78 26 chrX 6946190 6946344 -170027796 - MER5B DNA MER1_type 0 178 17 232 295 0 0 chrX 6946494 6946555 -170027585 + MIR SINE MIR 92 152 -110 1080 199 14 5 chrX 6947336 6947552 -170026588 + MER58A DNA MER1_type 7 224 0 670 285 84 45 chrX 6947718 6948116 -170026024 - L2 LINE L2 -97 3216 2791 3569 121 21 8 chrX 6948116 6948636 -170025504 + MER1A DNA MER1_type 1 527 0 670 285 84 45 chrX 6948636 6948815 -170025325 - L2 LINE L2 -522 2791 2620 26 113 0 0 chrX 6950351 6950475 -170023665 + AT_rich Low_complexity Low_complexity 1 124 0 7468 32 3 1 chrX 6950554 6952063 -170022077 + L1PA5 LINE L1 4639 6150 -4 195 303 53 26 chrX 6952308 6952384 -170021756 - L2 LINE L2 -678 2636 2559 180 111 0 0 chrX 6952572 6952599 -170021541 + (TG)n Simple_repeat Simple_repeat 2 28 0 193 373 124 17 chrX 6952791 6952968 -170021172 + L3b LINE CR1 1376 1571 -12 288 200 12 50 chrX 6953066 6953146 -170020994 - L2 LINE L2 -6 3307 3231 21 57 0 0 chrX 6953566 6953601 -170020539 + AT_rich Low_complexity Low_complexity 1 35 0 198 0 0 0 chrX 6954120 6954142 -170019998 + (T)n Simple_repeat Simple_repeat 1 22 0 416 255 39 39 chrX 6955507 6955660 -170018480 + MIR3 SINE MIR 41 193 -15 1148 187 9 5 chrX 6956339 6956553 -170017587 - MER20 DNA MER1_type -4 215 1 1447 227 127 55 chrX 6957208 6957720 -170016420 - L2 LINE L2 -663 2651 2103 808 151 78 0 chrX 6957721 6957900 -170016240 + L1MB5 LINE L1 5715 5907 -277 252 0 0 0 chrX 6957980 6958008 -170016132 + (TG)n Simple_repeat Simple_repeat 2 29 0 330 273 13 0 chrX 6958034 6958111 -170016029 - L2 LINE L2 -663 2651 2574 1411 169 4 4 chrX 6958151 6958412 -170015728 + L1MB5 LINE L1 5914 6174 0 789 283 116 44 chrX 6958429 6958536 -170015604 - L2 LINE L2 -1209 2105 2007 1944 152 7 13 chrX 6958536 6958875 -170015265 - AluSx SINE Alu 0 312 1 789 283 116 44 chrX 6958875 6959173 -170014967 - L2 LINE L2 -1307 2007 1671 285 318 77 12 chrX 6959816 6959986 -170014154 - L2 LINE L2 -1466 1848 1668 1877 153 7 0 chrX 6961051 6961326 -170012814 - AluJo SINE Alu -16 296 20 184 297 47 16 chrX 6961635 6961699 -170012441 + L2 LINE L2 3141 3206 -66 199 264 194 0 chrX 6961758 6961830 -170012310 + L2 LINE L2 3214 3299 -14 257 73 0 24 chrX 6961831 6961872 -170012268 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 482 225 220 17 chrX 6961936 6962109 -170012031 + MIR SINE MIR 30 237 -25 211 241 24 72 chrX 6962354 6962437 -170011703 + L2 LINE L2 3151 3229 -84 580 306 52 6 chrX 6963225 6963398 -170010742 + MIR SINE MIR 2 182 -80 525 247 110 26 chrX 6963691 6963845 -170010295 + MER5B DNA MER1_type 4 170 -8 3234 139 17 7 chrX 6963915 6964489 -170009651 + L1MB7 LINE L1 5582 6161 -23 750 208 3 15 chrX 6964858 6965166 -170008974 + MLT1A2 LTR MaLR 1 374 0 3139 195 70 17 chrX 6965552 6966333 -170007807 + MER99 DNA DNA 6 828 0 895 290 57 44 chrX 6966496 6966954 -170007186 + LTR16B LTR ERVL 1 464 0 1685 132 88 15 chrX 6967544 6967885 -170006255 + THE1C LTR MaLR 1 366 -9 187 324 152 19 chrX 6969984 6970089 -170004051 - L2 LINE L2 -9 3263 3145 345 296 102 9 chrX 6970582 6970690 -170003450 + L2 LINE L2 3196 3313 0 586 298 30 0 chrX 6970727 6970858 -170003282 + MER91C DNA MER1_type 6 140 0 191 36 36 0 chrX 6971227 6971255 -170002885 + (GGA)n Simple_repeat Simple_repeat 3 31 0 896 201 40 0 chrX 6972639 6972838 -170001302 + MER3 DNA MER1_type 2 208 -1 856 107 112 56 chrX 6973765 6973943 -170000197 - MER5A DNA MER1_type 0 189 2 237 306 116 75 chrX 6974105 6974546 -169999594 - L2 LINE L2 0 3272 2814 423 273 17 17 chrX 6975565 6975737 -169998403 + LTR16C LTR ERVL 263 434 -57 254 305 126 29 chrX 6975986 6976160 -169997980 + HAL1 LINE L1 410 600 -1907 320 243 123 88 chrX 6976268 6976790 -169997350 + HAL1 LINE L1 750 1289 -1218 521 277 152 13 chrX 6976790 6977014 -169997126 - MLT1J2 LTR MaLR 0 450 196 1249 253 88 5 chrX 6977175 6977598 -169996542 + HAL1 LINE L1 1289 1746 -761 717 128 0 56 chrX 6977740 6977865 -169996275 - FLAM_C SINE Alu -23 120 3 249 289 44 0 chrX 6977869 6977959 -169996181 + L3 LINE CR1 796 889 -688 299 306 15 22 chrX 6978421 6978555 -169995585 + L1M4 LINE L1 4883 5015 -1131 1575 125 73 62 chrX 6978754 6979043 -169995097 + AluJo SINE Alu 1 292 -20 625 280 102 41 chrX 6979938 6980332 -169993808 + L2 LINE L2 2791 3216 -97 1331 150 59 16 chrX 6981054 6981308 -169992832 + AluSc SINE Alu 9 273 -36 547 54 14 0 chrX 6981425 6981499 -169992641 + L1PA7 LINE L1 6077 6151 -3 426 248 66 15 chrX 6981781 6981918 -169992222 - MER117 DNA MER1_type -50 147 4 661 133 0 0 chrX 6983177 6983275 -169990865 - AluY SINE Alu -206 105 8 1404 208 32 26 chrX 6983326 6983705 -169990435 - L1MA7 LINE L1 -66 6225 5845 900 191 0 37 chrX 6983714 6983929 -169990211 - AluSc SINE Alu 0 309 103 336 258 89 61 chrX 6984511 6984675 -169989465 + MIR SINE MIR 19 184 -56 21 36 0 0 chrX 6984995 6985023 -169989117 + AT_rich Low_complexity Low_complexity 1 28 0 588 193 18 0 chrX 6986243 6986352 -169987788 - MER8 DNA MER2_type -125 114 4 858 230 16 11 chrX 6986363 6986554 -169987586 + MER58A DNA MER1_type 24 215 -9 238 214 43 29 chrX 6986583 6986653 -169987487 - MLT1J1 LTR MaLR -305 141 71 * 261 267 33 22 chrX 6986606 6986696 -169987444 - LTR67 LTR ERVL -396 161 71 330 251 47 76 chrX 6986745 6986916 -169987224 + MIR SINE MIR 85 250 -12 252 0 0 0 chrX 6987464 6987492 -169986648 + (A)n Simple_repeat Simple_repeat 1 28 0 237 339 0 62 chrX 6988630 6988742 -169985398 + L2 LINE L2 3000 3104 -209 189 196 0 0 chrX 6988913 6988959 -169985181 + (CA)n Simple_repeat Simple_repeat 2 47 0 832 174 47 56 chrX 6989647 6989860 -169984280 - MER20 DNA MER1_type -3 216 6 214 356 33 11 chrX 6990675 6990765 -169983375 - L2 LINE L2 -211 3061 2970 228 172 0 241 chrX 6990816 6990932 -169983208 + Tigger1 DNA MER2_type 2 89 -2329 1100 199 23 0 chrX 6990934 6991150 -169982990 + Tigger1 DNA MER2_type 67 287 -2131 269 218 11 81 chrX 6991301 6991388 -169982752 + L2 LINE L2 3231 3311 -2 236 380 70 16 chrX 6991920 6992049 -169982091 - L2 LINE L2 -1 3271 3136 290 82 9 0 chrX 6992062 6992108 -169982032 + Alu SINE Alu 252 291 -11 247 314 17 42 chrX 6992111 6992122 -169982018 - L2 LINE L2 -185 3128 3118 281 100 20 0 chrX 6992122 6992172 -169981968 + (TA)n Simple_repeat Simple_repeat 1 51 0 247 314 17 42 chrX 6992172 6992278 -169981862 - L2 LINE L2 -195 3118 3014 579 192 35 18 chrX 6992295 6992582 -169981558 + (TA)n Simple_repeat Simple_repeat 1 292 0 1387 238 11 18 chrX 6992759 6993209 -169980931 - L1M4 LINE L1 -1434 4712 4266 603 269 28 0 chrX 6993232 6993414 -169980726 - L1ME LINE L1 -392 5770 5584 1861 154 10 3 chrX 6994303 6994596 -169979544 + AluJb SINE Alu 2 296 -16 182 279 147 0 chrX 6994973 6995041 -169979099 - L2 LINE L2 -8 3264 3187 196 317 24 41 chrX 6995269 6995392 -169978748 - MIR SINE MIR -67 195 75 641 60 24 0 chrX 6995514 6995638 -169978502 + AluSc SINE Alu 194 319 0 212 322 130 55 chrX 6996414 6996560 -169977580 - MIR SINE MIR -6 256 100 717 143 23 143 chrX 6997196 6997503 -169976637 + Charlie1 DNA MER1_type 2492 2761 0 415 295 110 20 chrX 6997586 6997786 -169976354 + MIR SINE MIR 20 237 -25 411 236 55 0 chrX 6997886 6997996 -169976144 + MER63 DNA MER1_type 1 742 -94 21 0 0 0 chrX 6998660 6998681 -169975459 + AT_rich Low_complexity Low_complexity 1 21 0 900 346 152 35 chrX 6998810 6999599 -169974541 + L3 LINE CR1 593 1473 -104 579 215 15 0 chrX 6999882 7000017 -169974123 - L1MC4 LINE L1 -1078 6964 6828 1160 257 39 52 chrX 7000108 7000729 -169973411 - L1M4 LINE L1 -4577 2248 1485 461 369 31 5 chrX 7001451 7001646 -169972494 - MIR SINE MIR -36 226 27 719 239 93 11 chrX 7001646 7002008 -169972132 - LTR16A1 LTR ERVL -1 456 4 722 207 41 0 chrX 7002144 7002289 -169971851 - MER5A DNA MER1_type -38 151 1 1596 173 59 17 chrX 7002757 7003046 -169971094 + AluJo SINE Alu 1 301 -11 2005 158 16 67 chrX 7003222 7003714 -169970426 - L1MB8 LINE L1 0 6178 5712 1364 186 30 4 chrX 7004757 7005020 -169969120 + AluJb SINE Alu 40 309 -3 969 203 42 0 chrX 7005278 7005515 -169968625 + MER33 DNA MER1_type 1 247 -77 1483 229 50 14 chrX 7006449 7007194 -169966946 - MER99 DNA DNA 0 828 2 882 232 132 12 chrX 7007564 7007883 -169966257 + MLT1C LTR MaLR 111 467 0 25 51 0 0 chrX 7008173 7008212 -169965928 + AT_rich Low_complexity Low_complexity 1 39 0 484 298 68 8 chrX 7008780 7009015 -169965125 - HAL1 LINE L1 -1754 753 505 6931 126 15 5 chrX 7009016 7010147 -169963993 - Tigger1 DNA MER2_type 0 2418 1277 720 256 19 0 chrX 7012224 7012384 -169961756 - FRAM SINE Alu -13 163 1 316 324 64 20 chrX 7012448 7012652 -169961488 - L1 LINE L1 -2368 3778 3566 226 363 0 0 chrX 7013181 7013261 -169960879 + CT-rich Low_complexity Low_complexity 2 81 0 321 170 160 57 chrX 7013419 7013525 -169960615 - L2 LINE L2 0 3313 3197 21 36 0 0 chrX 7013560 7013588 -169960552 + AT_rich Low_complexity Low_complexity 1 28 0 199 204 0 23 chrX 7014234 7014278 -169959862 + MER5A DNA MER1_type 6 48 -141 349 223 68 19 chrX 7015680 7015783 -169958357 - L3 LINE CR1 -910 667 560 33 25 0 0 chrX 7016434 7016474 -169957666 + AT_rich Low_complexity Low_complexity 1 40 0 2399 77 17 31 chrX 7016474 7016826 -169957314 - L1PA7 LINE L1 -7 6147 5801 1113 250 114 45 chrX 7017252 7017725 -169956415 - MLT1H1 LTR MaLR -9 546 47 868 249 38 9 chrX 7018891 7019104 -169955036 + MER20 DNA MER1_type 1 219 0 573 201 29 14 chrX 7019466 7019605 -169954535 - AluSg/x SINE Alu -7 305 165 24 0 0 0 chrX 7019617 7019641 -169954499 + AT_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chrX 7019882 7019907 -169954233 + AT_rich Low_complexity Low_complexity 1 25 0 1787 169 0 20 chrX 7020284 7020586 -169953554 + AluJb SINE Alu 1 296 -16 74 39 0 0 chrX 7020812 7020914 -169953226 + AT_rich Low_complexity Low_complexity 1 102 0 1044 236 11 22 chrX 7021190 7021461 -169952679 + MLT1C LTR MaLR 200 467 0 305 293 0 13 chrX 7022068 7022143 -169951997 + MIR3 SINE MIR 111 184 -24 2047 99 0 3 chrX 7022437 7022749 -169951391 - L1P LINE L1 -3501 2645 2335 759 118 21 102 chrX 7022867 7023053 -169951087 + MER96B DNA MER1_type? 11 181 -236 233 167 19 0 chrX 7026782 7026836 -169947304 + CT-rich Low_complexity Low_complexity 2 56 0 575 299 0 0 chrX 7026896 7027030 -169947110 - L2 LINE L2 0 3313 3180 300 325 58 34 chrX 7027269 7027475 -169946665 - L2 LINE L2 -656 2658 2448 244 267 0 0 chrX 7027479 7027539 -169946601 - L2 LINE L2 -14 3299 3240 662 264 119 57 chrX 7027552 7028006 -169946134 - MLT1J LTR MaLR -11 500 19 182 365 21 10 chrX 7028082 7028178 -169945962 + MIR3 SINE MIR 105 201 -7 948 218 17 13 chrX 7028789 7029023 -169945117 + MER96B DNA MER1_type? 1 235 -182 2028 135 0 0 chrX 7029619 7029907 -169944233 + AluSx SINE Alu 1 288 -24 255 297 65 47 chrX 7030007 7030283 -169943857 + HAL1 LINE L1 1483 1763 -744 17338 64 4 15 chrX 7030486 7032963 -169941177 - L1P LINE L1 -1616 4530 2080 23 33 0 0 chrX 7033193 7033223 -169940917 + GC_rich Low_complexity Low_complexity 1 30 0 2076 197 41 60 chrX 7034905 7035894 -169938246 + L1M2 LINE L1 4663 5632 -680 326 226 119 0 chrX 7035896 7035980 -169938160 + L2 LINE L2 2749 2842 -472 472 223 78 10 chrX 7035982 7036085 -169938055 - L2 LINE L2 0 3313 3204 1259 242 89 28 chrX 7036092 7036517 -169937623 + L2 LINE L2 2859 3309 -4 10498 131 25 19 chrX 7036563 7038421 -169935719 + L1P LINE L1 55 1923 -4223 234 109 65 0 chrX 7139757 7139803 -169834337 + T-rich Low_complexity Low_complexity 2 50 0 21 110 0 0 chrX 7141154 7141245 -169832895 + AT_rich Low_complexity Low_complexity 1 91 0 2150 87 18 0 chrX 7141453 7141759 -169832381 + AluY SINE Alu 1 311 0 1885 157 38 0 chrX 7142141 7142434 -169831706 - AluJb SINE Alu -8 304 1 327 158 40 119 chrX 7142735 7142836 -169831304 - MER20 DNA MER1_type -57 162 70 923 28 14 35 chrX 7143062 7143203 -169830937 + (TTTC)n Simple_repeat Simple_repeat 2 139 0 7440 41 0 2 chrX 7144681 7145908 -169828232 + L1PA5 LINE L1 4930 6154 0 707 224 0 0 chrX 7145936 7146083 -169828057 + MER58B DNA MER1_type 195 341 0 1704 124 0 4 chrX 7146337 7146570 -169827570 + AluJb SINE Alu 1 232 -80 255 287 167 33 chrX 7146915 7147065 -169827075 - MIR SINE MIR 0 262 93 668 280 97 41 chrX 7147247 7147657 -169826483 - MLT1H LTR MaLR 0 549 15 258 32 0 0 chrX 7147798 7147829 -169826311 + (TG)n Simple_repeat Simple_repeat 2 32 0 190 0 0 62 chrX 7148211 7148243 -169825897 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 1686 148 44 19 chrX 7148245 7148516 -169825624 - AluJo SINE Alu -30 282 5 2455 52 13 7 chrX 7150284 7150593 -169823547 + AluY SINE Alu 1 311 0 1698 157 7 38 chrX 7150797 7151090 -169823050 + AluJb SINE Alu 1 311 0 244 0 0 0 chrX 7151090 7151117 -169823023 + (TAAA)n Simple_repeat Simple_repeat 2 120 0 21 0 0 0 chrX 7151203 7151224 -169822916 + AT_rich Low_complexity Low_complexity 1 21 0 843 176 59 12 chrX 7151841 7152011 -169822129 + MER5A DNA MER1_type 10 187 -2 242 275 14 0 chrX 7152519 7152588 -169821552 + MIR3 SINE MIR 133 202 -6 189 94 0 0 chrX 7154740 7154772 -169819368 + (A)n Simple_repeat Simple_repeat 1 32 0 21 0 0 0 chrX 7155186 7155207 -169818933 + AT_rich Low_complexity Low_complexity 1 21 0 609 301 26 0 chrX 7156557 7156750 -169817390 - MIR SINE MIR -62 200 3 2480 146 36 5 chrX 7156886 7157297 -169816843 - MSTB LTR MaLR -2 424 1 1660 158 37 11 chrX 7157441 7157714 -169816426 - AluJb SINE Alu -32 280 1 2257 128 0 0 chrX 7157777 7158089 -169816051 - AluSx SINE Alu 0 312 1 232 47 23 23 chrX 7158396 7158439 -169815701 + (TTTTA)n Simple_repeat Simple_repeat 2 44 0 2079 111 4 0 chrX 7158441 7158720 -169815420 - AluSx SINE Alu -30 282 3 307 299 83 25 chrX 7158907 7159064 -169815076 + MER5A DNA MER1_type 24 189 0 2566 141 14 39 chrX 7159114 7159553 -169814587 + MSTA LTR MaLR 1 428 0 432 229 62 0 chrX 7159677 7159773 -169814367 - MER5A DNA MER1_type -84 105 4 192 77 0 0 chrX 7161087 7161113 -169813027 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 180 364 46 5 chrX 7161797 7161992 -169812148 + L2 LINE L2 2569 2771 -543 206 228 0 0 chrX 7162220 7162277 -169811863 + (TAA)n Simple_repeat Simple_repeat 3 59 0 227 350 134 29 chrX 7162865 7163142 -169810998 + L2 LINE L2 2877 3182 -90 231 158 85 61 chrX 7163814 7163896 -169810244 - MIR SINE MIR 0 262 179 322 311 108 20 chrX 7164372 7164520 -169809620 - MIR SINE MIR -100 162 2 565 264 19 7 chrX 7168350 7168505 -169805635 - MIR SINE MIR -49 213 57 254 231 64 0 chrX 7168710 7168788 -169805352 + MIR SINE MIR 103 185 -77 249 108 0 0 chrX 7170085 7170122 -169804018 + (TTTC)n Simple_repeat Simple_repeat 3 39 0 337 158 66 0 chrX 7170272 7170348 -169803792 - MER53 DNA DNA -4 185 105 353 202 12 0 chrX 7170471 7170555 -169803585 - MER53 DNA DNA -104 85 1 203 278 5 96 chrX 7171173 7171360 -169802780 + CT-rich Low_complexity Low_complexity 6 175 0 183 156 0 0 chrX 7171388 7171420 -169802720 + CT-rich Low_complexity Low_complexity 5 36 0 1496 44 0 6 chrX 7172808 7172988 -169801152 + AluY SINE Alu 16 194 -117 1104 170 0 12 chrX 7173120 7173386 -169800754 + AluJb SINE Alu 6 304 -8 2389 99 3 0 chrX 7173670 7173972 -169800168 + AluSp SINE Alu 1 303 -10 3245 236 93 35 chrX 7174177 7174511 -169799629 - L1ME2 LINE L1 -9 6224 5911 3653 76 0 8 chrX 7174511 7175000 -169799140 - L1PA14 LINE L1 0 6161 5677 3245 236 93 35 chrX 7175000 7175910 -169798230 - L1ME2 LINE L1 -322 5911 5055 2484 55 7 0 chrX 7175910 7176217 -169797923 + AluY SINE Alu 1 309 -2 3245 236 93 35 chrX 7176217 7177077 -169797063 - L1ME2 LINE L1 -1178 5055 4001 2259 91 0 28 chrX 7177077 7177396 -169796744 - AluSx SINE Alu -2 310 1 755 169 26 21 chrX 7177405 7177594 -169796546 - L1ME2 LINE L1 -3057 3158 2969 621 254 41 53 chrX 7177588 7177907 -169796233 - L1ME2 LINE L1 -3898 2498 2184 * 2621 36 0 10 chrX 7178199 7178507 -169795633 + AluY SINE Alu 2 306 -5 543 138 75 0 chrX 7178555 7178649 -169795491 + L1PB4 LINE L1 6049 6149 -7 2358 60 0 0 chrX 7178943 7179269 -169794871 - AluY SINE Alu 0 326 1 198 328 0 0 chrX 7180872 7180936 -169793204 + MIR3 SINE MIR 142 205 -3 613 176 72 93 chrX 7181291 7181484 -169792656 - MER5A DNA MER1_type 0 189 1 2374 96 0 13 chrX 7181653 7181967 -169792173 + AluSq SINE Alu 1 310 -3 2274 129 0 0 chrX 7183185 7183495 -169790645 - AluSx SINE Alu -2 310 1 25 0 0 0 chrX 7183658 7183683 -169790457 + AT_rich Low_complexity Low_complexity 1 25 0 1838 144 14 0 chrX 7184718 7185002 -169789138 + AluJb SINE Alu 6 293 -19 2261 35 43 3 chrX 7185232 7185514 -169788626 + AluY SINE Alu 1 293 -18 722 209 0 8 chrX 7187150 7187284 -169786856 - FLAM_A SINE Alu 0 133 1 42058 41 1 0 chrX 7187860 7194012 -169780128 - L1PA4 LINE L1 0 6155 1 2028 130 3 17 chrX 7195447 7195746 -169778394 + AluJb SINE Alu 4 298 -14 210 213 0 0 chrX 7195746 7195785 -169778355 + CT-rich Low_complexity Low_complexity 7 48 0 224 269 60 15 chrX 7195803 7195870 -169778270 - MER5A DNA MER1_type 0 189 120 871 137 33 93 chrX 7195874 7195937 -169778203 - MER5A DNA MER1_type -2 187 122 2425 97 0 0 chrX 7195937 7196247 -169777893 + AluSg SINE Alu 1 310 0 871 137 33 93 chrX 7196247 7196366 -169777774 - MER5A DNA MER1_type -67 122 16 3447 151 15 3 chrX 7196367 7196955 -169777185 - MER50 LTR ERV1 -130 604 10 1075 188 42 14 chrX 7197039 7197252 -169776888 - MER20 DNA MER1_type 0 219 1 220 189 0 0 chrX 7198391 7198428 -169775712 + GA-rich Low_complexity Low_complexity 4 40 0 23 54 0 0 chrX 7198563 7198600 -169775540 + AT_rich Low_complexity Low_complexity 1 37 0 373 182 13 0 chrX 7200039 7200116 -169774024 - MER116 DNA Mariner -2 78 1 561 213 128 16 chrX 7201586 7201774 -169772366 + MLT1J1 LTR MaLR 3 211 -235 383 282 6 70 chrX 7201791 7201947 -169772193 + MLT1J2 LTR MaLR 245 390 -60 2705 88 11 13 chrX 7202344 7202720 -169771420 - THE1C LTR MaLR 0 375 1 1106 158 0 36 chrX 7202899 7203095 -169771045 + MER20 DNA MER1_type 31 219 0 427 390 8 0 chrX 7203096 7203219 -169770921 + L2 LINE L2 3149 3272 0 649 272 59 37 chrX 7203272 7203492 -169770648 + MIR SINE MIR 34 262 0 336 331 97 6 chrX 7203506 7203681 -169770459 - MIR SINE MIR -6 256 66 2198 88 0 0 chrX 7204010 7204284 -169769856 + AluSg1 SINE Alu 1 274 -35 189 0 0 0 chrX 7204285 7204306 -169769834 + (TC)n Simple_repeat Simple_repeat 2 22 0 * 243 0 0 0 chrX 7204305 7204332 -169769808 + (TG)n Simple_repeat Simple_repeat 2 28 0 407 152 13 0 chrX 7204332 7204411 -169769729 + (TA)n Simple_repeat Simple_repeat 2 81 0 2112 114 0 3 chrX 7205398 7205688 -169768452 - AluSx SINE Alu -23 289 1 1684 198 27 32 chrX 7205970 7206343 -169767797 - MLT1A2 LTR MaLR 0 374 4 2040 150 0 3 chrX 7208502 7208802 -169765338 - AluJb SINE Alu -13 299 1 2411 81 3 0 chrX 7208950 7209246 -169764894 + AluSp SINE Alu 1 297 -16 481 191 106 176 chrX 7209846 7210448 -169763692 - MER34 LTR ERV1 -5 560 1 940 123 0 64 chrX 7211099 7211270 -169762870 + MER20 DNA MER1_type 1 160 -59 714 97 111 7 chrX 7212294 7212438 -169761702 - MER33 DNA MER1_type 0 363 205 4209 137 4 13 chrX 7212439 7213156 -169760984 - MER50 LTR ERV1 -23 711 1 603 159 139 20 chrX 7213156 7213307 -169760833 - MER33 DNA MER1_type -155 169 1 3489 113 116 62 chrX 7213334 7213645 -169760495 - LTR8A LTR ERV1 0 727 434 1928 156 0 7 chrX 7213645 7213940 -169760200 + AluJb SINE Alu 1 293 -19 3489 113 116 62 chrX 7213940 7214316 -169759824 - LTR8A LTR ERV1 -293 434 3 188 263 74 84 chrX 7214405 7214500 -169759640 + L2 LINE L2 2916 3009 -263 360 253 71 33 chrX 7214529 7214711 -169759429 - MER34 LTR ERV1 -1 541 353 239 263 11 32 chrX 7214992 7215087 -169759053 - MER34 LTR ERV1 -409 133 41 403 331 7 29 chrX 7215216 7215355 -169758785 + L2 LINE L2 3136 3271 -1 1964 164 10 0 chrX 7215580 7215878 -169758262 + AluJb SINE Alu 1 301 -11 719 215 6 0 chrX 7216282 7216443 -169757697 + MER33 DNA MER1_type 1 154 -102 1617 101 0 14 chrX 7216443 7216660 -169757480 - AluSq SINE Alu -19 294 81 4409 166 57 56 chrX 7216660 7217730 -169756410 - MER11C LTR ERVK 0 1071 1 686 70 0 0 chrX 7217730 7217816 -169756324 - AluSq SINE Alu -226 86 1 816 143 34 11 chrX 7217816 7217991 -169756149 + MER33 DNA MER1_type 185 363 0 437 202 11 0 chrX 7218323 7218412 -169755728 - MIR3 SINE MIR -37 171 82 464 348 17 6 chrX 7218753 7218934 -169755206 + MIR SINE MIR 32 214 -48 217 320 0 0 chrX 7219447 7219547 -169754593 + (TA)n Simple_repeat Simple_repeat 2 101 0 1883 129 46 40 chrX 7219549 7219920 -169754220 + THE1C LTR MaLR 3 375 0 308 286 61 0 chrX 7220026 7220124 -169754016 - MLT1J2 LTR MaLR -148 302 199 424 49 49 0 chrX 7220212 7220273 -169753867 - LTR23 LTR ERV1 -373 64 1 385 314 99 45 chrX 7220410 7220833 -169753307 + L1MB8 LINE L1 4942 5387 -759 614 208 0 0 chrX 7220935 7221041 -169753099 + FLAM_A SINE Alu 23 128 -14 1676 172 0 27 chrX 7221053 7221349 -169752791 + AluJb SINE Alu 1 288 -24 300 274 104 0 chrX 7221380 7221515 -169752625 + L1MB8 LINE L1 5523 5671 -450 746 333 61 12 chrX 7222030 7222456 -169751684 + LTR16A LTR ERVL 4 450 0 541 167 34 4 chrX 7222477 7222605 -169751535 - LTR49 LTR ERV1 0 642 418 405 70 0 0 chrX 7223148 7223205 -169750935 + (TG)n Simple_repeat Simple_repeat 1 57 0 4430 83 48 3 chrX 7223208 7223833 -169750307 - MER39B LTR ERV1 0 653 1 999 220 143 9 chrX 7223974 7224324 -169749816 + L1MB8 LINE L1 5777 6173 -5 2256 86 3 29 chrX 7224363 7224745 -169749395 + AluSc SINE Alu 1 374 0 2092 114 44 0 chrX 7225003 7225301 -169748839 + AluSx SINE Alu 2 312 0 1800 174 16 3 chrX 7225504 7225808 -169748332 - AluJo SINE Alu -4 308 1 29 0 0 0 chrX 7226301 7226330 -169747810 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chrX 7226568 7226590 -169747550 + AT_rich Low_complexity Low_complexity 1 22 0 212 122 24 0 chrX 7226715 7226756 -169747384 + A-rich Low_complexity Low_complexity 3 44 0 895 126 0 16 chrX 7226920 7227047 -169747093 - FLAM_C SINE Alu -7 126 2 262 146 0 0 chrX 7227132 7227173 -169746967 - L2 LINE L2 -5 3308 3268 1572 251 109 17 chrX 7227298 7227829 -169746311 + MLT1G1 LTR MaLR 8 587 -8 1528 147 55 22 chrX 7227995 7228319 -169745821 - AluJb SINE Alu 0 333 1 274 247 14 0 chrX 7228322 7228395 -169745745 - L1ME LINE L1 -459 5662 5589 270 282 34 60 chrX 7229173 7229290 -169744850 - MIR SINE MIR -50 212 99 1016 224 9 9 chrX 7229405 7229628 -169744512 - MER58A DNA MER1_type -1 223 1 1291 277 109 35 chrX 7229694 7230419 -169743721 - L1MC4a LINE L1 -1773 6035 5257 251 227 45 0 chrX 7233347 7233435 -169740705 + (TA)n Simple_repeat Simple_repeat 2 93 0 470 276 70 22 chrX 7235138 7235323 -169738817 - MIR SINE MIR -6 256 63 1716 149 86 122 chrX 7236023 7236086 -169738054 - MLT1D LTR MaLR 0 505 441 1714 163 58 4 chrX 7236086 7236362 -169737778 + AluJo SINE Alu 1 291 -21 1716 149 86 122 chrX 7236362 7236822 -169737318 - MLT1D LTR MaLR -64 441 1 2108 139 0 0 chrX 7236833 7237127 -169737013 - AluJb SINE Alu -16 296 3 711 272 100 21 chrX 7237587 7237826 -169736314 - MIR SINE MIR -3 259 2 186 277 0 0 chrX 7238894 7238941 -169735199 - L2 LINE L2 -3 3310 3264 2899 16 0 0 chrX 7239816 7240134 -169734006 - AluYb8 SINE Alu 0 318 1 1230 261 69 22 chrX 7242020 7242426 -169731714 - L3b LINE CR1 -57 1526 1102 183 287 0 111 chrX 7242663 7242771 -169731369 - L3 LINE CR1 -801 776 681 200 233 0 33 chrX 7242934 7242994 -169731146 + CT-rich Low_complexity Low_complexity 4 61 0 2133 134 0 0 chrX 7243244 7243543 -169730597 + AluJo SINE Alu 1 299 -13 1486 159 4 0 chrX 7244350 7244602 -169729538 + L1MB8 LINE L1 5534 5786 -392 2086 124 0 25 chrX 7244603 7244917 -169729223 + AluSq SINE Alu 2 307 -6 248 288 47 88 chrX 7245312 7245482 -169728658 - MIR SINE MIR -70 192 30 251 28 28 0 chrX 7245526 7245562 -169728578 + (CAAA)n Simple_repeat Simple_repeat 4 40 0 1622 160 59 31 chrX 7245576 7245963 -169728177 + L1MB8 LINE L1 5781 6178 0 248 288 47 88 chrX 7246178 7246348 -169727792 + MIR SINE MIR 30 192 -70 2287 101 3 0 chrX 7246743 7247049 -169727091 - AluSp SINE Alu -6 307 1 2398 81 0 3 chrX 7247460 7247757 -169726383 + AluY SINE Alu 2 297 -14 461 229 23 0 chrX 7247757 7247888 -169726252 - L1MD2 LINE L1 -30 6329 6196 324 0 0 0 chrX 7250607 7250643 -169723497 + (T)n Simple_repeat Simple_repeat 1 36 0 1577 235 89 25 chrX 7251716 7252154 -169721986 - LTR16C LTR ERVL 0 491 26 881 252 95 56 chrX 7253020 7253464 -169720676 - MLT1H LTR MaLR 0 549 89 356 254 106 14 chrX 7253828 7253970 -169720170 - HAL1 LINE L1 -710 1797 1643 535 249 50 50 chrX 7254005 7254206 -169719934 + L2 LINE L2 3113 3313 0 199 255 29 88 chrX 7254278 7254354 -169719786 + L2 LINE L2 3216 3286 -27 2215 119 0 45 chrX 7254354 7254707 -169719433 + MER1B DNA MER1_type 1 337 0 199 255 29 88 chrX 7254707 7254732 -169719408 + L2 LINE L2 3286 3311 -2 989 272 106 44 chrX 7255941 7256769 -169717371 - L2 LINE L2 -9 3304 2430 605 311 116 19 chrX 7257043 7257144 -169716996 + L3 LINE CR1 1026 1116 -461 1818 169 0 7 chrX 7257144 7257446 -169716694 + AluJb SINE Alu 1 300 -12 605 311 116 19 chrX 7257446 7257662 -169716478 + L3 LINE CR1 1116 1374 -203 855 284 85 31 chrX 7257675 7258097 -169716043 + MLT1J2 LTR MaLR 6 450 0 245 276 26 0 chrX 7258101 7258177 -169715963 + L3 LINE CR1 1383 1460 -117 1533 204 127 31 chrX 7258208 7258722 -169715418 - LTR48B LTR ERV1 0 644 82 326 237 6 0 chrX 7258782 7258874 -169715266 - MER34 LTR ERV1 -446 96 3 245 233 211 0 chrX 7260073 7260206 -169713934 - Zaphod DNA AcHobo -3283 748 588 525 244 49 44 chrX 7260212 7260417 -169713723 - MLT1J2 LTR MaLR -244 206 1 306 244 12 12 chrX 7260770 7260856 -169713284 - MLT1L LTR MaLR -110 505 420 227 286 31 57 chrX 7262894 7263086 -169711054 - LTR16C LTR ERVL 0 491 305 2346 133 50 0 chrX 7263484 7263868 -169710272 + MER57A LTR ERV1 1 403 0 246 336 53 0 chrX 7263887 7264000 -169710140 - MIR3 SINE MIR -86 122 4 38733 64 12 2 chrX 7264904 7270986 -169703154 - L1PA5 LINE L1 0 6154 11 778 187 18 0 chrX 7271101 7271267 -169702873 - L1MD3 LINE L1 -5 7990 7822 1842 101 0 0 chrX 7271422 7271659 -169702481 - AluSg/x SINE Alu -5 307 71 264 59 0 0 chrX 7272151 7272185 -169701955 + (CA)n Simple_repeat Simple_repeat 1 34 0 297 0 0 0 chrX 7272253 7272286 -169701854 + (TA)n Simple_repeat Simple_repeat 2 34 0 1096 233 64 86 chrX 7275195 7275332 -169698808 - MER34 LTR ERV1 -4 538 400 1954 131 0 21 chrX 7275332 7275622 -169698518 + AluJo SINE Alu 15 298 -14 1096 233 64 86 chrX 7275622 7276034 -169698106 - MER34 LTR ERV1 -142 400 1 276 264 0 0 chrX 7276080 7276133 -169698007 + MER45 DNA AcHobo 1 53 -125 1031 174 28 19 chrX 7276143 7276356 -169697784 - MER58 DNA MER1_type -126 215 1 1031 156 12 0 chrX 7276370 7276537 -169697603 + MER5A DNA MER1_type 21 189 0 901 166 12 12 chrX 7276547 7276710 -169697430 + MER5B DNA MER1_type 3 165 -13 353 187 17 0 chrX 7276722 7276797 -169697343 - MIR SINE MIR -65 143 67 912 230 87 9 chrX 7277561 7277791 -169696349 + MIR SINE MIR 15 262 0 328 330 37 0 chrX 7277830 7277939 -169696201 - MIR SINE MIR -148 114 2 985 244 125 72 chrX 7278099 7278995 -169695145 + L2 LINE L2 2362 3307 -6 1903 145 7 10 chrX 7279571 7279867 -169694273 + AluSx SINE Alu 1 295 -17 201 74 0 0 chrX 7280289 7280316 -169693824 + (TTATA)n Simple_repeat Simple_repeat 4 30 0 522 229 123 29 chrX 7281952 7282196 -169691944 - HAL1 LINE L1 0 2507 2241 573 284 88 57 chrX 7282229 7282569 -169691571 - MLT1J LTR MaLR -7 504 141 976 161 0 0 chrX 7282569 7282760 -169691380 + FAM SINE Alu 1 56 0 573 284 88 57 chrX 7282760 7282906 -169691234 - MLT1J LTR MaLR -370 141 1 261 263 44 18 chrX 7282922 7283036 -169691104 - HAL1 LINE L1 -389 2118 2002 866 269 69 19 chrX 7283084 7283463 -169690677 - HAL1 LINE L1 -607 1900 1503 27 0 0 0 chrX 7283526 7283553 -169690587 + AT_rich Low_complexity Low_complexity 1 27 0 1505 160 183 9 chrX 7283642 7283980 -169690160 + MLT2C1 LTR ERVL 1 397 0 41 58 0 0 chrX 7283989 7284058 -169690082 + AT_rich Low_complexity Low_complexity 1 69 0 1575 160 0 26 chrX 7284192 7284460 -169689680 + AluJb SINE Alu 35 295 -17 242 323 97 0 chrX 7284839 7284932 -169689208 - MIR SINE MIR -76 132 31 231 182 0 0 chrX 7285333 7285377 -169688763 + MER116 DNA Mariner 11 54 -26 1816 148 16 23 chrX 7285717 7286106 -169688034 - AluJb SINE Alu 0 387 1 1189 170 18 22 chrX 7286298 7286521 -169687619 - MLT1A1 LTR MaLR -11 354 133 268 350 56 33 chrX 7286861 7287041 -169687099 - MER5A DNA MER1_type 0 189 6 1210 134 31 0 chrX 7287041 7287235 -169686905 + MER20 DNA MER1_type 20 219 0 22 35 0 0 chrX 7288799 7288828 -169685312 + GC_rich Low_complexity Low_complexity 1 29 0 304 309 54 27 chrX 7291745 7291894 -169682246 - MIR SINE MIR -50 212 60 265 310 69 26 chrX 7294940 7295056 -169679084 + L2 LINE L2 3136 3256 -16 378 94 0 0 chrX 7295268 7295332 -169678808 + (TC)n Simple_repeat Simple_repeat 1 64 0 297 0 0 0 chrX 7295332 7295365 -169678775 + (TA)n Simple_repeat Simple_repeat 1 33 0 2446 40 10 7 chrX 7298487 7298786 -169675354 + AluY SINE Alu 1 300 -11 2203 81 7 55 chrX 7299163 7299473 -169674667 - AluSq SINE Alu -18 295 1 1668 52 64 0 chrX 7299565 7299798 -169674342 + L1PB1 LINE L1 5534 5781 -370 261 180 0 0 chrX 7299799 7299849 -169674291 + (TG)n Simple_repeat Simple_repeat 2 51 0 2527 103 0 5 chrX 7299867 7300235 -169673905 + L1PB1 LINE L1 5785 6150 -1 223 248 8 39 chrX 7300241 7300253 -169673887 + A-rich Low_complexity Low_complexity 2 13 -113 217 49 0 49 chrX 7300253 7300294 -169673846 + (TTAAA)n Simple_repeat Simple_repeat 3 41 0 223 248 8 39 chrX 7300294 7300410 -169673730 + A-rich Low_complexity Low_complexity 13 126 0 238 179 36 0 chrX 7300449 7300505 -169673635 + (TA)n Simple_repeat Simple_repeat 1 58 0 22 0 0 0 chrX 7300723 7300745 -169673395 + AT_rich Low_complexity Low_complexity 1 22 0 574 276 108 20 chrX 7301061 7301311 -169672829 - L3 LINE CR1 -514 1063 792 2093 145 22 11 chrX 7301711 7302076 -169672064 - MER31-int LTR ERV1 -4400 536 168 26 30 0 0 chrX 7302249 7302282 -169671858 + AT_rich Low_complexity Low_complexity 1 33 0 210 64 21 43 chrX 7302784 7302831 -169671309 + (AGGGGG)n Simple_repeat Simple_repeat 5 50 0 207 325 98 32 chrX 7304109 7304232 -169669908 - L2 LINE L2 -3 3269 3139 1127 153 0 6 chrX 7304248 7304418 -169669722 + AluJb SINE Alu 1 169 -143 230 224 0 52 chrX 7304578 7304636 -169669504 - L2 LINE L2 -17 3296 3242 2198 47 18 4 chrX 7304852 7305161 -169668979 - AluY SINE Alu 0 313 1 1943 106 7 18 chrX 7305161 7305466 -169668674 - AluSq SINE Alu 0 313 38 3555 113 25 7 chrX 7305470 7306034 -169668106 - Tigger3b DNA MER2_type -657 574 1 474 191 38 38 chrX 7306034 7306164 -169667976 + MER34C LTR ERV1 456 585 0 1743 168 135 25 chrX 7306164 7306559 -169667581 + MLT1D LTR MaLR 67 505 0 188 279 49 0 chrX 7306569 7306630 -169667510 - L2 LINE L2 -944 2370 2307 325 328 62 62 chrX 7306766 7306854 -169667286 - L2 LINE L2 -1180 2134 2047 1713 167 46 7 chrX 7306854 7307136 -169667004 - AluJb SINE Alu -18 294 2 325 328 62 62 chrX 7307136 7307562 -169666578 - L2 LINE L2 -1266 2048 1620 2179 114 0 25 chrX 7307615 7307930 -169666210 - AluSx SINE Alu -5 307 1 2178 116 36 18 chrX 7308392 7308721 -169665419 - MER1B DNA MER1_type -2 335 1 475 329 121 26 chrX 7309801 7310114 -169664026 + L2 LINE L2 2397 2739 -575 346 187 93 173 chrX 7310182 7310471 -169663669 + MER5C DNA MER1_type 14 279 -45 809 201 65 0 chrX 7310495 7310664 -169663476 + MER5A DNA MER1_type 10 189 0 630 183 36 29 chrX 7310698 7310835 -169663305 + MER3 DNA MER1_type 72 209 0 32 26 0 0 chrX 7311668 7311707 -169662433 + AT_rich Low_complexity Low_complexity 1 39 0 2469 88 0 0 chrX 7312103 7312410 -169661730 - AluSx SINE Alu -5 307 1 11899 27 6 10 chrX 7312471 7314649 -169659491 + L1PA4 LINE L1 3971 6154 -1 24 85 0 0 chrX 7315008 7315067 -169659073 + AT_rich Low_complexity Low_complexity 1 59 0 252 122 0 0 chrX 7315129 7315170 -169658970 + (TTTTC)n Simple_repeat Simple_repeat 2 42 0 498 75 0 0 chrX 7315170 7315237 -169658903 + (TCCCC)n Simple_repeat Simple_repeat 4 70 0 754 139 47 31 chrX 7315246 7315375 -169658765 - FLAM_C SINE Alu -2 131 1 282 281 165 16 chrX 7315631 7315752 -169658388 - MIR SINE MIR -96 166 28 23 54 0 0 chrX 7315868 7315905 -169658235 + AT_rich Low_complexity Low_complexity 1 37 0 232 365 103 19 chrX 7316059 7316215 -169657925 - L2 LINE L2 0 3272 3104 1007 157 37 42 chrX 7316250 7316467 -169657673 + MER20 DNA MER1_type 1 216 -3 981 108 23 0 chrX 7316513 7316643 -169657497 + AluJb SINE Alu 1 133 -179 265 42 21 42 chrX 7316643 7316691 -169657449 + (CAAAAA)n Simple_repeat Simple_repeat 1 47 0 937 185 0 0 chrX 7316703 7316854 -169657286 + AluJb SINE Alu 129 279 -33 225 0 0 0 chrX 7316854 7316879 -169657261 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 1798 117 51 18 chrX 7317010 7317380 -169656760 + Tigger3(Golem) DNA MER2_type 1 3028 -1 236 318 234 7 chrX 7317521 7317815 -169656325 + L2 LINE L2 2715 3060 -212 740 145 192 47 chrX 7317833 7318028 -169656112 - AluJo SINE Alu 0 305 86 372 279 94 41 chrX 7318035 7318279 -169655861 + LTR33 LTR ERVL 25 281 -240 230 262 24 0 chrX 7318309 7318393 -169655747 + LTR33 LTR ERVL 373 458 -63 366 331 44 7 chrX 7318817 7318953 -169655187 - L2 LINE L2 -7 3265 3125 210 71 0 0 chrX 7319444 7319472 -169654668 + (TG)n Simple_repeat Simple_repeat 1 28 0 925 240 83 0 chrX 7319738 7319942 -169654198 - MER58A DNA MER1_type 0 224 4 21 0 0 0 chrX 7320209 7320230 -169653910 + AT_rich Low_complexity Low_complexity 1 21 0 2093 103 22 3 chrX 7320250 7320569 -169653571 + L1MB7 LINE L1 5841 6165 -19 269 200 0 33 chrX 7320600 7320660 -169653480 + L1ME LINE L1 5551 5608 -513 245 284 95 21 chrX 7320916 7321011 -169653129 - MIR SINE MIR -48 214 113 223 298 235 9 chrX 7321145 7321460 -169652680 + L2 LINE L2 2578 2963 -351 206 256 13 0 chrX 7321586 7321664 -169652476 + CT-rich Low_complexity Low_complexity 4 82 0 217 272 291 10 chrX 7321670 7321773 -169652367 + L2 LINE L2 3141 3272 0 1087 157 13 57 chrX 7322664 7322893 -169651247 - MER20 DNA MER1_type 0 219 1 213 255 41 92 chrX 7326272 7326370 -169647770 + MIR3 SINE MIR 70 162 -46 230 220 0 51 chrX 7326370 7326429 -169647711 + GA-rich Low_complexity Low_complexity 3 58 0 335 264 31 78 chrX 7327459 7327588 -169646552 - MIR SINE MIR -108 154 32 1857 240 103 20 chrX 7327676 7328222 -169645918 + MLT1E LTR MaLR 1 591 -2 21 0 0 0 chrX 7328477 7328498 -169645642 + AT_rich Low_complexity Low_complexity 1 21 0 232 339 126 24 chrX 7329117 7329244 -169644896 + MIR SINE MIR 27 166 -96 5778 114 18 10 chrX 7329249 7329566 -169644574 + L1PA16 LINE L1 4872 5185 -981 2133 113 7 13 chrX 7329566 7329876 -169644264 + AluSc SINE Alu 1 308 -1 5778 114 18 10 chrX 7329876 7330864 -169643276 + L1PA16 LINE L1 5185 6166 0 21 0 0 0 chrX 7330901 7330922 -169643218 + AT_rich Low_complexity Low_complexity 1 21 0 2436 82 0 0 chrX 7331012 7331315 -169642825 - AluSg SINE Alu -7 303 1 3706 194 25 55 chrX 7331329 7332734 -169641406 - L1MCa LINE L1 -4861 1046 337 7789 17 0 2 chrX 7332734 7333944 -169640196 - L1PA3 LINE L1 0 6155 4947 3706 194 25 55 chrX 7333944 7334266 -169639874 - L1MCa LINE L1 -5570 337 7 2317 102 0 3 chrX 7334626 7334921 -169639219 + AluSx SINE Alu 1 294 -18 200 270 132 53 chrX 7334921 7334963 -169639177 + L3 LINE CR1 1079 1116 -461 2521 171 85 43 chrX 7334963 7335561 -169638579 - MLT1E2 LTR MaLR -2 624 2 200 270 132 53 chrX 7335561 7335707 -169638433 + L3 LINE CR1 1116 1282 -295 399 302 60 9 chrX 7335721 7335837 -169638303 - L2 LINE L2 -3 3269 3148 6860 33 8 0 chrX 7336318 7337619 -169636521 + L1PA5 LINE L1 4868 6180 0 4167 138 19 19 chrX 7337659 7338361 -169635779 - L1MB4 LINE L1 -1 6179 5475 261 0 0 0 chrX 7338361 7338390 -169635750 + (TG)n Simple_repeat Simple_repeat 2 30 0 4167 138 19 19 chrX 7338390 7338445 -169635695 - L1MB4 LINE L1 -704 5476 5422 379 265 29 10 chrX 7338659 7338761 -169635379 + L3 LINE CR1 1405 1508 -69 524 273 162 15 chrX 7338987 7339185 -169634955 - MIR SINE MIR -5 257 31 198 171 0 0 chrX 7340140 7340181 -169633959 + CT-rich Low_complexity Low_complexity 1 41 0 336 249 117 121 chrX 7340987 7341244 -169632896 - MIR SINE MIR -6 256 1 1703 175 24 15 chrX 7341524 7341862 -169632278 - MER58B DNA MER1_type 0 341 1 620 174 16 0 chrX 7342075 7342196 -169631944 - L1MD2 LINE L1 0 6359 6237 324 102 0 0 chrX 7342241 7342290 -169631850 + (TG)n Simple_repeat Simple_repeat 1 49 0 2201 186 32 0 chrX 7342315 7342756 -169631384 - L1MD1 LINE L1 -183 6059 5605 200 252 30 126 chrX 7342893 7343028 -169631112 - MIR SINE MIR -63 145 24 617 262 12 18 chrX 7343616 7343780 -169630360 + MER5A DNA MER1_type 11 173 -16 33 0 0 0 chrX 7343828 7343861 -169630279 + AT_rich Low_complexity Low_complexity 1 33 0 959 103 7 0 chrX 7345158 7345304 -169628836 + (TTTC)n Simple_repeat Simple_repeat 2 148 0 2010 118 4 0 chrX 7345304 7345583 -169628557 - AluSx SINE Alu -32 280 1 396 289 191 36 chrX 7346398 7346623 -169627517 - MIR SINE MIR -1 261 2 222 176 0 0 chrX 7346806 7346857 -169627283 + CT-rich Low_complexity Low_complexity 2 52 0 276 91 0 0 chrX 7346869 7346913 -169627227 + (GA)n Simple_repeat Simple_repeat 1 44 0 214 296 0 0 chrX 7349444 7349498 -169624642 + CT-rich Low_complexity Low_complexity 1 54 0 200 94 0 31 chrX 7349663 7349695 -169624445 + (TTTTC)n Simple_repeat Simple_repeat 5 35 0 6622 76 23 3 chrX 7349768 7351166 -169622974 + L1PA11 LINE L1 4754 6174 0 183 80 0 0 chrX 7351279 7351304 -169622836 + (TG)n Simple_repeat Simple_repeat 2 26 0 209 173 39 0 chrX 7351307 7351359 -169622781 + (TA)n Simple_repeat Simple_repeat 2 55 0 400 317 122 35 chrX 7353536 7353766 -169620374 - MIR SINE MIR 0 262 13 325 367 53 20 chrX 7353822 7354067 -169620073 + L2 LINE L2 2422 2674 -640 462 133 0 0 chrX 7354073 7354148 -169619992 + MADE1 DNA Mariner 6 80 0 244 280 156 82 chrX 7354271 7354553 -169619587 + L2 LINE L2 3008 3310 -3 244 276 13 13 chrX 7354558 7354634 -169619506 + CT-rich Low_complexity Low_complexity 1 76 0 433 285 0 0 chrX 7354894 7355017 -169619123 + HsTC2 DNA Tc2 79 201 -1697 267 54 0 0 chrX 7355136 7355173 -169618967 + (GA)n Simple_repeat Simple_repeat 2 38 0 355 277 36 0 chrX 7355204 7355316 -169618824 + HsTC2 DNA Tc2 1017 1132 -766 231 145 26 79 chrX 7355538 7355614 -169618526 + HsTC2 DNA Tc2 1669 1740 -158 377 206 122 8 chrX 7355678 7355809 -169618331 + HsTC2 DNA Tc2 1745 1890 -8 369 309 54 30 chrX 7356496 7356664 -169617476 - MIR SINE MIR -6 256 85 23 54 0 0 chrX 7357167 7357204 -169616936 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chrX 7357372 7357394 -169616746 + AT_rich Low_complexity Low_complexity 1 22 0 253 241 96 36 chrX 7358044 7358127 -169616013 + L2 LINE L2 3182 3269 -3 24 0 0 0 chrX 7360292 7360316 -169613824 + AT_rich Low_complexity Low_complexity 1 24 0 258 393 61 0 chrX 7362596 7362759 -169611381 - MIR SINE MIR -56 206 34 2305 109 0 0 chrX 7363378 7363689 -169610451 - AluSx SINE Alu -1 311 1 230 295 162 29 chrX 7364157 7364262 -169609878 + MIR3 SINE MIR 5 123 -85 363 351 8 0 chrX 7364327 7364458 -169609682 - L2 LINE L2 -1 3312 3181 528 300 24 15 chrX 7365064 7365352 -169608788 - MLT1I LTR MaLR 0 409 83 417 324 60 42 chrX 7365734 7365950 -169608190 + L3 LINE CR1 607 826 -751 182 219 203 16 chrX 7366127 7366191 -169607949 + L3 LINE CR1 1068 1143 -434 992 184 87 5 chrX 7366227 7366434 -169607706 - MER58A DNA MER1_type 0 224 1 189 0 0 0 chrX 7366587 7366608 -169607532 + (TTAAA)n Simple_repeat Simple_repeat 4 24 0 217 364 17 17 chrX 7366866 7366984 -169607156 - MIR SINE MIR -61 147 30 988 284 61 77 chrX 7367320 7367397 -169606743 + L2 LINE L2 2537 2614 -699 999 168 42 37 chrX 7367397 7367611 -169606529 - MER20 DNA MER1_type -4 215 1 988 284 61 77 chrX 7367611 7367725 -169606415 + L2 LINE L2 2614 2728 -585 306 0 0 0 chrX 7367725 7367759 -169606381 + (CA)n Simple_repeat Simple_repeat 2 35 0 2806 56 0 6 chrX 7367759 7368118 -169606022 + L1PB1 LINE L1 5793 6149 -2 988 284 61 77 chrX 7368118 7368381 -169605759 + L2 LINE L2 2727 2967 -346 1886 203 35 60 chrX 7368381 7368899 -169605241 + MLT1D LTR MaLR 1 505 0 988 284 61 77 chrX 7368899 7369079 -169605061 + L2 LINE L2 2967 3148 -165 184 244 22 0 chrX 7370841 7370886 -169603254 - L2 LINE L2 -4 3268 3223 1693 187 3 16 chrX 7370985 7371300 -169602840 - AluJb SINE Alu -1 311 1 1481 189 6 6 chrX 7371352 7371664 -169602476 + L1MD3 LINE L1 7474 7785 -210 1105 180 0 3 chrX 7371665 7371876 -169602264 + AluJb SINE Alu 2 283 -29 617 13 0 25 chrX 7371891 7371970 -169602170 + (GAAA)n Simple_repeat Simple_repeat 2 78 0 679 205 78 0 chrX 7371970 7372175 -169601965 + L1MD3 LINE L1 7775 7995 0 214 270 30 20 chrX 7372228 7372328 -169601812 + (CAGAGA)n Simple_repeat Simple_repeat 6 106 0 218 194 48 0 chrX 7373805 7373867 -169600273 + (TCTA)n Simple_repeat Simple_repeat 2 66 0 470 99 33 211 chrX 7373872 7374024 -169600116 - MER20 DNA MER1_type -5 214 90 24 53 0 0 chrX 7374038 7374076 -169600064 + AT_rich Low_complexity Low_complexity 1 38 0 266 289 40 0 chrX 7375156 7375232 -169598908 + L2 LINE L2 3230 3308 -5 636 352 36 0 chrX 7375270 7375489 -169598651 + MIR SINE MIR 19 245 -17 240 312 113 28 chrX 7375709 7375850 -169598290 + MIR SINE MIR 86 238 -24 210 225 0 0 chrX 7376327 7376367 -169597773 + (CTCA)n Simple_repeat Simple_repeat 1 40 0 765 199 8 0 chrX 7377828 7377959 -169596181 + FLAM_A SINE Alu 1 132 -1 2423 152 79 31 chrX 7377984 7378466 -169595674 + MLT1D LTR MaLR 1 505 0 358 291 26 17 chrX 7378590 7378707 -169595433 + MER5A DNA MER1_type 29 146 -43 2146 204 77 54 chrX 7378710 7378970 -169595170 - MLT1E LTR MaLR 0 593 341 830 125 0 21 chrX 7378970 7379114 -169595026 - L1PB1 LINE L1 0 6151 6011 2146 204 77 54 chrX 7379114 7379412 -169594728 - MLT1E LTR MaLR -252 341 22 448 269 174 50 chrX 7380002 7380359 -169593781 + MLT1J2 LTR MaLR 46 446 -4 254 245 157 20 chrX 7380998 7381100 -169593040 - MIR SINE MIR -129 133 18 206 287 61 12 chrX 7381252 7381416 -169592724 + (TATATG)n Simple_repeat Simple_repeat 3 174 0 182 250 163 25 chrX 7381428 7381508 -169592632 - MIR SINE MIR -147 115 25 213 39 0 0 chrX 7381871 7381897 -169592243 + (TA)n Simple_repeat Simple_repeat 2 27 0 198 103 0 0 chrX 7382005 7382034 -169592106 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 888 165 198 0 chrX 7382399 7382581 -169591559 - MER20 DNA MER1_type 0 219 2 259 264 0 66 chrX 7385374 7385465 -169588675 + L2 LINE L2 2545 2629 -685 2287 200 49 9 chrX 7385496 7386027 -169588113 - L1MB8 LINE L1 -13 6165 5614 335 125 0 16 chrX 7386184 7386248 -169587892 - L1MA5 LINE L1 -6 6294 6232 396 343 67 46 chrX 7386278 7386561 -169587579 + L2 LINE L2 2688 2976 -338 572 279 102 26 chrX 7386563 7386789 -169587351 + MIR SINE MIR 7 249 -13 259 389 94 45 chrX 7386777 7387042 -169587098 + L2 LINE L2 2987 3264 -8 * 1080 255 107 41 chrX 7387052 7387539 -169586601 + LTR33 LTR ERVL 1 519 -2 2501 145 20 92 chrX 7388432 7388976 -169585164 - MLT1D LTR MaLR 0 505 1 29 0 0 0 chrX 7388978 7389007 -169585133 + AT_rich Low_complexity Low_complexity 1 29 0 208 274 48 48 chrX 7389731 7389815 -169584325 - L2 LINE L2 -52 3220 3137 601 196 8 15 chrX 7390022 7390155 -169583985 + Charlie7 DNA MER1_type 5 136 -2476 1119 212 83 50 chrX 7390173 7390649 -169583491 - MER39 LTR ERV1 -33 674 1 632 293 94 17 chrX 7390740 7391091 -169583049 + Charlie7 DNA MER1_type 346 723 -1889 235 221 172 0 chrX 7391082 7391204 -169582936 + Charlie7 DNA MER1_type 2416 2558 -54 * 417 39 0 0 chrX 7392534 7392585 -169581555 + (TG)n Simple_repeat Simple_repeat 1 51 0 428 284 25 50 chrX 7394020 7394221 -169579919 + MIR SINE MIR 1 196 -66 217 284 0 63 chrX 7394288 7394383 -169579757 - MIR3 SINE MIR -38 170 82 3855 193 30 42 chrX 7395524 7396419 -169577721 - L1M4 LINE L1 -5149 1393 510 646 319 32 30 chrX 7396608 7397009 -169577131 + MLT1I LTR MaLR 2 403 -6 26734 96 11 14 chrX 7397504 7401605 -169572535 + L1P LINE L1 11 4101 -2045 2149 53 0 0 chrX 7401605 7401870 -169572270 + L1PA6 LINE L1 5889 6154 0 22 56 0 0 chrX 7402151 7402187 -169571953 + AT_rich Low_complexity Low_complexity 1 36 0 2511 122 11 82 chrX 7402244 7402705 -169571435 + MSTC LTR MaLR 1 428 0 323 275 12 69 chrX 7402863 7403023 -169571117 - L1MC4a LINE L1 -1870 5938 5788 2098 105 0 66 chrX 7403252 7403586 -169570554 + AluSx SINE Alu 1 312 0 746 216 18 48 chrX 7403734 7403961 -169570179 - MER74A LTR ERVL 0 558 339 2019 229 54 0 chrX 7404148 7404685 -169569455 - L1ME1 LINE L1 -122 6044 5479 266 302 57 19 chrX 7405068 7405174 -169568966 + MLT1J LTR MaLR 378 487 -24 290 330 141 10 chrX 7405494 7405700 -169568440 + MIR SINE MIR 12 244 -18 539 315 25 38 chrX 7406306 7406544 -169567596 + MIR SINE MIR 18 252 -10 * 609 284 37 11 chrX 7406524 7406714 -169567426 - MIR SINE MIR -48 214 20 21 0 0 0 chrX 7407173 7407194 -169566946 + AT_rich Low_complexity Low_complexity 1 21 0 502 208 20 25 chrX 7407558 7408128 -169566012 + (TA)n Simple_repeat Simple_repeat 1 567 0 261 261 29 0 chrX 7408128 7408197 -169565943 + (TATG)n Simple_repeat Simple_repeat 4 74 0 597 165 23 23 chrX 7408198 7408416 -169565724 + (TA)n Simple_repeat Simple_repeat 1 218 0 451 230 60 0 chrX 7408840 7408940 -169565200 + MER81 DNA DNA 1 106 -8 959 281 56 42 chrX 7410000 7410359 -169563781 + LTR16B LTR ERVL 3 366 -98 330 317 17 17 chrX 7412300 7412420 -169561720 + MIR3 SINE MIR 78 197 -11 2174 84 28 0 chrX 7412491 7412775 -169561365 - AluSg SINE Alu -18 292 1 239 173 19 0 chrX 7414342 7414394 -169559746 + (CA)n Simple_repeat Simple_repeat 2 54 0 462 293 96 21 chrX 7414530 7414769 -169559371 + MIR SINE MIR 4 260 -2 353 246 93 0 chrX 7415195 7415313 -169558827 + MER103 DNA DNA 5 133 -33 233 296 17 43 chrX 7415540 7415655 -169558485 + 7SK RNA RNA 10 121 -72 220 297 20 40 chrX 7415848 7415949 -169558191 - MER5A DNA MER1_type -1 188 90 196 304 133 30 chrX 7415849 7415984 -169558156 + MER5A DNA MER1_type 17 165 -24 * 215 336 115 26 chrX 7416004 7416117 -169558023 + MER5B DNA MER1_type 10 132 -46 1060 80 0 7 chrX 7416945 7417095 -169557045 - L1PB1 LINE L1 0 6151 6003 1545 183 123 144 chrX 7417138 7417942 -169556198 - L1MC4a LINE L1 -15 7793 7007 261 111 0 0 chrX 7418092 7418128 -169556012 + Alu SINE Alu 1 36 -272 2113 125 13 0 chrX 7418192 7418497 -169555643 + AluSx SINE Alu 1 309 -3 557 266 8 0 chrX 7418903 7419031 -169555109 - MER58B DNA MER1_type -16 325 197 2408 72 0 0 chrX 7421442 7421735 -169552405 - AluY SINE Alu -18 293 1 324 326 49 56 chrX 7421940 7422084 -169552056 + L2 LINE L2 3115 3257 -15 2428 183 23 2 chrX 7423240 7423727 -169550413 - L1MB7 LINE L1 -19 6165 5669 365 298 16 32 chrX 7423889 7424013 -169550127 + MER5A DNA MER1_type 68 189 0 496 186 20 20 chrX 7424028 7424130 -169550010 + MER5A DNA MER1_type 9 110 -79 4477 125 15 4 chrX 7424148 7425141 -169548999 + L1PA16 LINE L1 4886 5892 -274 690 231 0 66 chrX 7425165 7425347 -169548793 + MER5B DNA MER1_type 5 174 -4 1795 110 140 10 chrX 7425371 7425671 -169548469 - MER1B DNA MER1_type 0 339 1 346 257 23 12 chrX 7425791 7425962 -169548178 + GA-rich Low_complexity Low_complexity 3 175 0 2627 219 53 55 chrX 7426078 7426835 -169547305 - L1ME1 LINE L1 -4 6162 5408 449 278 97 32 chrX 7426904 7427213 -169546927 - L1MC5 LINE L1 -29 7932 7604 1580 11 0 0 chrX 7427741 7427920 -169546220 + L1PA4 LINE L1 5977 6155 0 342 0 0 0 chrX 7427956 7427994 -169546146 + (TG)n Simple_repeat Simple_repeat 2 39 0 957 202 25 15 chrX 7429504 7429702 -169544438 - MER20 DNA MER1_type -14 205 6 1089 264 82 24 chrX 7431059 7431613 -169542527 - L2 LINE L2 -22 3291 2703 826 156 17 165 chrX 7431617 7431854 -169542286 + MER20 DNA MER1_type 1 202 -17 805 294 184 24 chrX 7431854 7432266 -169541874 - L2 LINE L2 -607 2707 2230 297 305 74 68 chrX 7432276 7432466 -169541674 - LTR67 LTR ERVL -10 547 357 1230 272 171 8 chrX 7432738 7433213 -169540927 - L2 LINE L2 -1080 2234 1683 24 53 0 0 chrX 7433276 7433314 -169540826 + AT_rich Low_complexity Low_complexity 1 38 0 315 300 0 30 chrX 7433451 7433551 -169540589 - L1MC4 LINE L1 -1342 6700 6604 7736 177 25 4 chrX 7434105 7435608 -169538532 - L1 LINE L1 -869 5277 3743 703 261 48 0 chrX 7435660 7435867 -169538273 + MER46C DNA MER2_type 113 329 -9 2067 119 0 33 chrX 7436536 7436839 -169537301 + AluSx SINE Alu 1 293 -19 23 68 0 0 chrX 7438454 7438498 -169535642 + AT_rich Low_complexity Low_complexity 1 44 0 227 241 13 57 chrX 7439714 7439872 -169534268 - L1M4c LINE L1 -3819 2563 2413 21 57 0 0 chrX 7440260 7440295 -169533845 + AT_rich Low_complexity Low_complexity 1 35 0 643 306 55 55 chrX 7440387 7440789 -169533351 - L1M4c LINE L1 -852 1891 1288 1882 162 94 110 chrX 7440796 7441297 -169532843 - L1MDa LINE L1 -6031 509 17 704 92 0 0 chrX 7441949 7442047 -169532093 - AluSc SINE Alu -211 98 1 1843 274 83 21 chrX 7442395 7443170 -169530970 - HAL1 LINE L1 -396 2111 1289 590 259 156 18 chrX 7443331 7443555 -169530585 + MLT1J2 LTR MaLR 196 450 0 399 253 113 88 chrX 7443555 7444058 -169530082 - HAL1 LINE L1 -1218 1289 774 309 304 122 33 chrX 7444178 7444359 -169529781 - HAL1 LINE L1 -1901 606 410 554 306 41 59 chrX 7444608 7444997 -169529143 - LTR16C LTR ERVL -57 434 53 212 306 116 75 chrX 7445799 7446240 -169527900 + L2 LINE L2 2814 3272 0 846 107 112 56 chrX 7446402 7446580 -169527560 + MER5A DNA MER1_type 2 189 0 907 206 40 0 chrX 7447507 7447706 -169526434 - MER3 DNA MER1_type -1 208 2 191 36 36 0 chrX 7449090 7449118 -169525022 + (TCC)n Simple_repeat Simple_repeat 3 31 0 583 298 30 0 chrX 7449487 7449618 -169524522 + MER91C DNA MER1_type 1 135 -5 344 296 102 9 chrX 7449655 7449763 -169524377 - L2 LINE L2 0 3313 3196 186 324 152 19 chrX 7450256 7450361 -169523779 + L2 LINE L2 3145 3263 -9 1812 132 88 15 chrX 7452459 7452800 -169521340 - THE1C LTR MaLR -9 366 1 899 290 57 44 chrX 7453390 7453848 -169520292 - LTR16B LTR ERVL 0 464 1 3368 195 70 17 chrX 7454011 7454792 -169519348 - MER99 DNA DNA 0 828 6 823 208 3 15 chrX 7455178 7455486 -169518654 - MLT1A2 LTR MaLR 0 374 1 3525 141 17 7 chrX 7455855 7456431 -169517709 - L1MB7 LINE L1 -23 6161 5580 522 247 110 26 chrX 7456499 7456653 -169517487 - MER5B DNA MER1_type -8 170 4 581 306 52 6 chrX 7456946 7457119 -169517021 - MIR SINE MIR -80 182 2 211 241 24 72 chrX 7457907 7457990 -169516150 - L2 LINE L2 -84 3229 3151 481 220 220 17 chrX 7458235 7458408 -169515732 - MIR SINE MIR -25 237 30 257 73 0 24 chrX 7458472 7458513 -169515627 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 196 264 194 0 chrX 7458514 7458586 -169515554 - L2 LINE L2 -14 3299 3214 182 297 47 16 chrX 7458645 7458709 -169515431 - L2 LINE L2 -66 3206 3141 1856 153 7 0 chrX 7459018 7459293 -169514847 + AluJo SINE Alu 20 296 -16 265 318 77 12 chrX 7460358 7460528 -169513612 + L2 LINE L2 1668 1848 -1466 791 281 116 44 chrX 7461171 7461469 -169512671 + L2 LINE L2 1671 2007 -1307 1921 152 7 13 chrX 7461469 7461804 -169512336 + AluSx SINE Alu 1 312 0 791 281 116 44 chrX 7461804 7461911 -169512229 + L2 LINE L2 2007 2105 -1209 1535 169 4 4 chrX 7461928 7462189 -169511951 - L1MB5 LINE L1 0 6174 5914 334 273 13 0 chrX 7462229 7462306 -169511834 + L2 LINE L2 2574 2651 -663 252 0 0 0 chrX 7462332 7462360 -169511780 + (CA)n Simple_repeat Simple_repeat 2 29 0 898 192 82 0 chrX 7462390 7462619 -169511521 - L1MB7 LINE L1 -191 5963 5715 1439 219 131 59 chrX 7462620 7463132 -169511008 + L2 LINE L2 2103 2651 -663 1242 187 9 5 chrX 7463787 7464001 -169510139 + MER20 DNA MER1_type 1 215 -4 404 239 36 43 chrX 7464695 7464833 -169509307 - MIR3 SINE MIR -31 177 41 198 0 0 0 chrX 7466198 7466220 -169507920 + (A)n Simple_repeat Simple_repeat 1 22 0 21 57 0 0 chrX 7466739 7466774 -169507366 + AT_rich Low_complexity Low_complexity 1 35 0 288 200 12 50 chrX 7467194 7467274 -169506866 + L2 LINE L2 3231 3307 -6 186 373 124 17 chrX 7467372 7467549 -169506591 - L3b LINE CR1 -12 1571 1376 1116 126 0 18 chrX 7468424 7468632 -169505508 - AluSq SINE Alu 0 326 122 2421 92 0 3 chrX 7468650 7468955 -169505185 - AluSq SINE Alu -9 304 1 1444 182 68 14 chrX 7468958 7469238 -169504902 - AluJb SINE Alu -17 295 1 9311 110 17 1 chrX 7469330 7471267 -169502873 + L1PA16 LINE L1 4046 6004 -162 315 259 47 12 chrX 7472200 7472285 -169501855 - MER5A DNA MER1_type -101 88 1 1962 131 10 16 chrX 7472700 7473012 -169501128 - AluJo SINE Alu -2 310 1 480 245 113 0 chrX 7473674 7473833 -169500307 + MER5B DNA MER1_type 1 177 -1 1372 144 22 10 chrX 7474560 7474927 -169499213 - MSTB2 LTR MaLR 0 457 13 2115 201 38 42 chrX 7475334 7475832 -169498308 + MLT1D LTR MaLR 1 496 -9 2671 46 0 0 chrX 7479463 7479768 -169494372 - AluY SINE Alu -6 305 1 207 0 0 0 chrX 7479853 7479876 -169494264 + (TG)n Simple_repeat Simple_repeat 2 24 0 1580 173 4 7 chrX 7479908 7480180 -169493960 - AluJb SINE Alu -30 282 12 250 274 66 47 chrX 7480982 7481088 -169493052 + MIR SINE MIR 17 124 -138 633 257 102 0 chrX 7481098 7481285 -169492855 + MIR SINE MIR 13 218 -44 2387 88 0 19 chrX 7481285 7481602 -169492538 + AluSx SINE Alu 1 311 -1 975 200 15 25 chrX 7481786 7481986 -169492154 - MER58A DNA MER1_type 0 224 27 195 196 22 22 chrX 7482055 7482101 -169492039 - MIR SINE MIR -6 256 211 321 297 0 0 chrX 7483004 7483078 -169491062 + MIR SINE MIR 24 97 -111 3310 98 20 7 chrX 7483106 7483629 -169490511 + L1MA1 LINE L1 5573 6096 -204 207 288 8 16 chrX 7483822 7483947 -169490193 + (TGGG)n Simple_repeat Simple_repeat 1 124 0 534 250 64 68 chrX 7484495 7484715 -169489425 + L2 LINE L2 3085 3303 -10 1147 238 5 0 chrX 7484801 7485024 -169489116 - MER58A DNA MER1_type 0 224 1 2046 130 0 33 chrX 7485789 7486090 -169488050 + AluJb SINE Alu 1 291 -21 1019 174 36 20 chrX 7487712 7487908 -169486232 - MER58A DNA MER1_type 0 224 26 697 0 22 11 chrX 7488355 7488444 -169485696 + (TTTC)n Simple_repeat Simple_repeat 3 92 0 261 180 0 20 chrX 7488488 7488538 -169485602 - MER58 DNA MER1_type -16 2404 2356 * 764 225 172 45 chrX 7488520 7488681 -169485459 - MER58 DNA MER1_type -2145 275 71 2363 77 0 13 chrX 7488681 7488981 -169485159 + AluSp SINE Alu 1 296 -17 764 225 172 45 chrX 7488981 7489063 -169485077 - MER58 DNA MER1_type -2349 71 1 884 190 0 12 chrX 7489188 7489351 -169484789 - FRAM SINE Alu -4 172 12 28 0 0 0 chrX 7489390 7489418 -169484722 + AT_rich Low_complexity Low_complexity 1 28 0 885 120 0 8 chrX 7489419 7489544 -169484596 - FLAM_C SINE Alu -19 124 1 257 219 49 12 chrX 7489554 7489636 -169484504 + MER117 DNA MER1_type 37 121 -76 1244 224 39 77 chrX 7492440 7492922 -169481218 + LTR37B LTR ERV1 1 464 -4 2429 162 29 43 chrX 7494243 7494755 -169479385 + L1MB8 LINE L1 5674 6178 0 2140 112 0 20 chrX 7494764 7495060 -169479080 + AluJb SINE Alu 1 290 -22 554 213 0 39 chrX 7495230 7495357 -169478783 - L2 LINE L2 0 3313 3192 2258 145 75 6 chrX 7495434 7495885 -169478255 - MER31A LTR ERV1 0 661 1 1790 194 32 24 chrX 7496580 7496956 -169477184 + LTR2B LTR ERV1 112 490 0 2862 80 10 8 chrX 7496956 7497354 -169476786 + Harlequin LTR ERV1 1 399 -6497 744 134 0 52 chrX 7497325 7497459 -169476681 + HERVE LTR ERV1 255 381 -7432 * 300 135 0 39 chrX 7497447 7497499 -169476641 + HERVE LTR ERV1 255 304 -7509 * 6967 66 94 21 chrX 7497500 7498488 -169475652 + HERVE LTR ERV1 282 1341 -5555 1902 56 56 0 chrX 7498478 7498748 -169475392 + HERVE LTR ERV1 1984 2268 -4628 * 582 54 0 0 chrX 7500278 7500352 -169473788 + (GA)n Simple_repeat Simple_repeat 1 74 0 2282 106 0 0 chrX 7500740 7501042 -169473098 + AluSx SINE Alu 1 302 -10 189 0 0 0 chrX 7501826 7501847 -169472293 + (T)n Simple_repeat Simple_repeat 1 21 0 408 191 0 0 chrX 7502499 7502588 -169471552 + G-rich Low_complexity Low_complexity 1 89 0 439 286 0 41 chrX 7502609 7502756 -169471384 + G-rich Low_complexity Low_complexity 6 146 0 203 324 14 7 chrX 7502897 7503039 -169471101 + (TA)n Simple_repeat Simple_repeat 2 144 0 249 33 0 0 chrX 7504115 7504145 -169469995 + (CA)n Simple_repeat Simple_repeat 2 31 0 198 0 0 0 chrX 7504930 7504952 -169469188 + (A)n Simple_repeat Simple_repeat 1 22 0 26 64 0 0 chrX 7505255 7505302 -169468838 + AT_rich Low_complexity Low_complexity 1 47 0 401 291 132 35 chrX 7505815 7506155 -169467985 + L3 LINE CR1 1197 1569 -8 2030 140 6 19 chrX 7508042 7508356 -169465784 - AluJb SINE Alu -2 310 1 242 247 68 75 chrX 7508881 7509034 -169465106 + MIR3 SINE MIR 35 184 -24 1891 122 40 4 chrX 7509090 7509368 -169464772 + AluJo SINE Alu 1 288 -24 2129 133 7 0 chrX 7509373 7509666 -169464474 + AluSx SINE Alu 1 295 -17 201 74 0 0 chrX 7510088 7510115 -169464025 + (TTATA)n Simple_repeat Simple_repeat 4 30 0 1142 175 0 0 chrX 7511238 7511421 -169462719 - AluJb SINE Alu -3 309 127 1952 142 42 0 chrX 7511433 7511722 -169462418 + AluSx SINE Alu 1 301 -11 242 374 20 0 chrX 7512279 7512378 -169461762 + L2 LINE L2 3169 3269 -3 210 191 0 0 chrX 7512947 7512989 -169461151 + (TA)n Simple_repeat Simple_repeat 2 43 0 253 198 109 50 chrX 7513793 7513894 -169460246 - MIR SINE MIR -23 239 133 793 11 0 0 chrX 7514173 7514268 -169459872 - L1MA4A LINE L1 -7 6296 6202 189 0 0 0 chrX 7515509 7515530 -169458610 + (TTG)n Simple_repeat Simple_repeat 1 21 0 236 270 0 0 chrX 7517177 7517240 -169456900 + L2 LINE L2 3246 3308 -5 204 229 0 21 chrX 7517243 7517291 -169456849 + (TGAA)n Simple_repeat Simple_repeat 4 50 0 1551 95 40 5 chrX 7517299 7517521 -169456619 - MER30 DNA MER1_type 0 230 1 1886 178 12 3 chrX 7517928 7518260 -169455880 + MER2 DNA MER2_type 2 336 -9 2445 62 0 0 chrX 7519189 7519477 -169454663 + AluY SINE Alu 1 288 -23 1448 216 78 56 chrX 7519482 7519849 -169454291 - MLT1C LTR MaLR 0 467 87 1940 138 20 10 chrX 7519849 7520145 -169453995 + AluJb SINE Alu 1 299 -13 1448 216 78 56 chrX 7520145 7520225 -169453915 - MLT1C LTR MaLR -380 87 10 1364 176 52 94 chrX 7520678 7521059 -169453081 + MSTB LTR MaLR 19 383 -43 347 248 24 24 chrX 7522156 7522281 -169451859 + (TA)n Simple_repeat Simple_repeat 1 125 0 1333 159 136 31 chrX 7523396 7523654 -169450486 + AluJb SINE Alu 10 294 -18 210 338 0 12 chrX 7523731 7523811 -169450329 - L2 LINE L2 -213 3059 2981 492 62 0 0 chrX 7523860 7523924 -169450216 + (TC)n Simple_repeat Simple_repeat 2 65 0 315 0 0 0 chrX 7523943 7523978 -169450162 + (CA)n Simple_repeat Simple_repeat 2 36 0 2359 107 0 3 chrX 7524025 7524335 -169449805 + AluSx SINE Alu 1 309 -3 446 314 29 29 chrX 7525902 7526074 -169448066 - MIR3 SINE MIR -21 187 16 7457 53 10 0 chrX 7527067 7527970 -169446170 - Harlequin LTR ERV1 -2633 4263 3352 28 0 0 0 chrX 7528287 7528315 -169445825 + AT_rich Low_complexity Low_complexity 1 28 0 669 136 39 0 chrX 7528315 7528418 -169445722 - U6 snRNA snRNA 0 107 1 1695 247 106 11 chrX 7528799 7529273 -169444867 + LTR40a LTR ERVL 1 519 0 23 54 0 0 chrX 7531507 7531544 -169442596 + AT_rich Low_complexity Low_complexity 1 37 0 2562 66 0 0 chrX 7531811 7532116 -169442024 - AluY SINE Alu -6 305 1 928 233 26 37 chrX 7532118 7532466 -169441674 - L1M4 LINE L1 -1449 4697 4354 39 38 0 0 chrX 7532820 7532873 -169441267 + AT_rich Low_complexity Low_complexity 1 53 0 1027 197 0 0 chrX 7532873 7533051 -169441089 - AluJ SINE Alu -10 302 125 405 118 47 24 chrX 7533051 7533178 -169440962 + (TA)n Simple_repeat Simple_repeat 2 131 0 960 107 0 0 chrX 7533179 7533301 -169440839 - AluJ SINE Alu -190 122 1 1040 178 53 14 chrX 7533578 7533786 -169440354 - MLT1A1 LTR MaLR -149 216 1 991 251 66 11 chrX 7533862 7534149 -169439991 + LTR16A1 LTR ERVL 155 457 0 2449 80 0 3 chrX 7534237 7534549 -169439591 + AluY SINE Alu 1 311 0 447 136 0 12 chrX 7535542 7535623 -169438517 - L1MA5 LINE L1 0 6300 6221 28 71 0 0 chrX 7535655 7535711 -169438429 + AT_rich Low_complexity Low_complexity 1 56 0 361 294 33 50 chrX 7535972 7536152 -169437988 + MIR SINE MIR 78 254 -8 4841 122 11 7 chrX 7538329 7539068 -169435072 + L1PA16 LINE L1 5424 6165 -1 201 274 16 16 chrX 7539238 7539300 -169434840 - MIR SINE MIR -115 147 86 1541 95 5 5 chrX 7539643 7539843 -169434297 - AluSc SINE Alu -109 200 1 779 192 110 11 chrX 7540013 7540195 -169433945 + L1ME2 LINE L1 5963 6162 -2 278 0 54 0 chrX 7541091 7541128 -169433012 + (GAAAA)n Simple_repeat Simple_repeat 2 40 0 183 345 58 6 chrX 7541141 7541312 -169432828 - MIR SINE MIR -36 226 47 2456 139 71 73 chrX 7543272 7543762 -169430378 - LTR2B LTR ERV1 -1 489 1 599 238 41 12 chrX 7543902 7544074 -169430066 - MER33 DNA MER1_type -138 186 10 1004 237 19 14 chrX 7544081 7544296 -169429844 - MER58A DNA MER1_type 0 224 9 442 175 183 5 chrX 7544565 7544687 -169429453 + MIR SINE MIR 4 144 -64 22 56 0 0 chrX 7545808 7545844 -169428296 + AT_rich Low_complexity Low_complexity 1 36 0 1867 125 125 3 chrX 7546888 7547208 -169426932 + MER46B DNA MER2_type 3 236 0 1493 189 0 34 chrX 7547235 7547532 -169426608 + AluJo SINE Alu 1 287 -25 1983 133 0 10 chrX 7547660 7547962 -169426178 - AluSx SINE Alu -13 299 1 291 188 16 16 chrX 7548388 7548452 -169425688 - MER20 DNA MER1_type -155 64 1 1629 135 58 8 chrX 7548707 7548998 -169425142 + AluJo SINE Alu 12 315 0 29 70 0 0 chrX 7549327 7549384 -169424756 + AT_rich Low_complexity Low_complexity 1 57 0 22 56 0 0 chrX 7549519 7549555 -169424585 + AT_rich Low_complexity Low_complexity 1 36 0 464 310 61 31 chrX 7550933 7551162 -169422978 - MIR SINE MIR -1 261 26 311 333 75 11 chrX 7551821 7551995 -169422145 + MIR SINE MIR 13 197 -65 1570 249 40 18 chrX 7552032 7552481 -169421659 + L1ME1 LINE L1 5703 6161 -5 218 31 0 31 chrX 7553159 7553191 -169420949 + (TCCC)n Simple_repeat Simple_repeat 1 31 0 393 262 60 30 chrX 7554055 7554254 -169419886 - L1ME2 LINE L1 0 6166 5968 182 328 107 16 chrX 7555390 7555512 -169418628 - MIR3 SINE MIR -63 145 13 283 222 0 0 chrX 7555779 7555833 -169418307 - MER94 DNA DNA -79 55 2 698 0 12 0 chrX 7556079 7556161 -169417979 + (CA)n Simple_repeat Simple_repeat 2 84 0 478 250 22 15 chrX 7557408 7557544 -169416596 + MIR SINE MIR 16 152 -110 180 0 0 0 chrX 7558084 7558104 -169416036 + (A)n Simple_repeat Simple_repeat 1 20 0 1476 160 98 49 chrX 7560112 7560437 -169413703 + MER58B DNA MER1_type 1 341 0 214 351 18 12 chrX 7560596 7560767 -169413373 + CT-rich Low_complexity Low_complexity 1 172 0 207 194 0 0 chrX 7561094 7561130 -169413010 + (CATA)n Simple_repeat Simple_repeat 4 39 0 25 0 0 0 chrX 7561130 7561155 -169412985 + AT_rich Low_complexity Low_complexity 1 25 0 1887 97 41 4 chrX 7561634 7561903 -169412237 - L1PA8 LINE L1 0 6172 5894 409 295 5 58 chrX 7561952 7562142 -169411998 + CT-rich Low_complexity Low_complexity 1 180 0 2456 161 12 5 chrX 7562748 7563152 -169410988 - L1MA6 LINE L1 0 6300 5894 1531 140 8 51 chrX 7563164 7563503 -169410637 - L1MA5 LINE L1 -321 5970 5655 547 273 107 19 chrX 7563519 7563724 -169410416 + MIR SINE MIR 36 258 -4 443 209 189 53 chrX 7565720 7566021 -169408119 - L1ME4a LINE L1 -46 6075 5734 432 272 20 27 chrX 7566417 7566564 -169407576 + MER5A DNA MER1_type 44 189 0 1038 239 36 30 chrX 7566936 7567270 -169406870 - L1 LINE L1 -2452 3694 3359 1091 162 66 5 chrX 7567540 7567738 -169406402 - L1MD3 LINE L1 -137 7858 7649 189 0 0 0 chrX 7568646 7568667 -169405473 + (TTA)n Simple_repeat Simple_repeat 2 22 0 214 208 62 0 chrX 7570802 7570850 -169403290 - L2 LINE L2 -96 3217 3167 482 154 7 26 chrX 7571298 7571370 -169402770 - MSTB2 LTR MaLR 0 457 385 1777 165 17 7 chrX 7571370 7571661 -169402479 + AluJb SINE Alu 2 295 -17 482 154 7 26 chrX 7571661 7571704 -169402436 - MSTB2 LTR MaLR -72 385 287 183 80 0 0 chrX 7572659 7572684 -169401456 + (TA)n Simple_repeat Simple_repeat 2 26 0 261 0 0 0 chrX 7573004 7573033 -169401107 + (T)n Simple_repeat Simple_repeat 1 29 0 216 0 0 0 chrX 7573137 7573161 -169400979 + (CA)n Simple_repeat Simple_repeat 2 25 0 7225 80 21 14 chrX 7573723 7574733 -169399407 + Harlequin LTR ERV1 4478 5494 -1402 198 300 218 0 chrX 7574928 7575098 -169399042 - L3 LINE CR1 -126 1451 1245 594 284 53 5 chrX 7575175 7575365 -169398775 - MIR SINE MIR -17 245 47 1815 220 27 34 chrX 7575858 7576392 -169397748 + L1MB8 LINE L1 5466 5990 -194 201 354 0 13 chrX 7576510 7576589 -169397551 + L2 LINE L2 3191 3268 -4 534 264 42 0 chrX 7576938 7577105 -169397035 + MER104 DNA Tc2 7 180 0 421 304 15 0 chrX 7577961 7578096 -169396044 + L1 LINE L1 3745 3881 -2265 1603 283 29 7 chrX 7578126 7578688 -169395452 - L1M4 LINE L1 -1098 5048 4475 1419 216 47 13 chrX 7578687 7579071 -169395069 + L1 LINE L1 3564 3960 -2186 * 3569 142 48 15 chrX 7581071 7581721 -169392419 - L1MB2 LINE L1 -2 6169 5499 3009 166 49 19 chrX 7583797 7584368 -169389772 + L1MD2 LINE L1 5428 6015 -344 237 242 8 17 chrX 7584513 7584633 -169389507 + G-rich Low_complexity Low_complexity 4 122 0 300 188 0 0 chrX 7584772 7584841 -169389299 + G-rich Low_complexity Low_complexity 1 69 0 299 168 37 22 chrX 7585502 7585584 -169388556 + MER53 DNA DNA 1 116 -73 332 262 85 38 chrX 7586188 7586344 -169387796 + MIR SINE MIR 21 192 -69 670 269 144 30 chrX 7586499 7586860 -169387280 + LTR16C LTR ERVL 80 481 -10 594 96 0 21 chrX 7587058 7587152 -169386988 - MER49 LTR ERV1 -831 92 1 237 330 103 49 chrX 7589987 7590172 -169383968 + L2 LINE L2 2985 3179 -93 222 208 0 0 chrX 7590537 7590585 -169383555 + CT-rich Low_complexity Low_complexity 3 50 0 443 228 16 65 chrX 7591979 7592163 -169381977 + CT-rich Low_complexity Low_complexity 2 176 0 6004 186 33 6 chrX 7592298 7593464 -169380676 + L1P LINE L1 1403 2600 -3546 1342 196 48 102 chrX 7593617 7594055 -169380085 - MLT1E1 LTR MaLR -165 489 17 365 45 0 0 chrX 7594124 7594168 -169379972 + (TG)n Simple_repeat Simple_repeat 1 44 0 234 0 0 0 chrX 7594174 7594200 -169379940 + (TA)n Simple_repeat Simple_repeat 1 26 0 222 186 31 41 chrX 7594230 7594327 -169379813 + (TTAAA)n Simple_repeat Simple_repeat 3 98 0 * 329 215 23 35 chrX 7594293 7594465 -169379675 + (TTTA)n Simple_repeat Simple_repeat 3 172 0 252 260 35 0 chrX 7594382 7594555 -169379585 + (TTA)n Simple_repeat Simple_repeat 1 179 0 * 22 0 0 0 chrX 7594555 7594577 -169379563 + AT_rich Low_complexity Low_complexity 1 22 0 185 141 64 0 chrX 7594577 7594655 -169379485 + (TA)n Simple_repeat Simple_repeat 1 83 0 70 13 0 0 chrX 7594660 7594737 -169379403 + AT_rich Low_complexity Low_complexity 1 77 0 1256 199 0 30 chrX 7595292 7595558 -169378582 - AluJo SINE Alu -17 295 38 198 341 81 24 chrX 7596470 7596593 -169377547 - L2 LINE L2 -617 2697 2568 281 361 133 0 chrX 7596612 7596770 -169377370 + MIR3 SINE MIR 7 185 -23 508 256 125 47 chrX 7597579 7597847 -169376293 - MLT1K LTR MaLR -8 589 323 33 0 0 0 chrX 7598719 7598752 -169375388 + AT_rich Low_complexity Low_complexity 1 33 0 217 330 33 0 chrX 7598835 7598926 -169375214 - MER5B DNA MER1_type -1 177 84 896 268 98 0 chrX 7599027 7599303 -169374837 + MLT1I LTR MaLR 101 403 -6 193 238 0 48 chrX 7599309 7599351 -169374789 - MER5B DNA MER1_type -135 43 4 8048 29 1 4 chrX 7599534 7600947 -169373193 + L1PA4 LINE L1 4744 6153 -2 983 224 35 39 chrX 7601920 7602206 -169371934 + L1MA9 LINE L1 5990 6274 -38 3604 106 10 4 chrX 7603045 7603556 -169370584 - L1MA4 LINE L1 -10 6290 5777 2282 107 3 0 chrX 7603575 7603874 -169370266 - AluSx SINE Alu -11 301 2 197 370 55 24 chrX 7606128 7606255 -169367885 + L2 LINE L2 3127 3257 -15 202 274 0 41 chrX 7607189 7607262 -169366878 + GA-rich Low_complexity Low_complexity 4 73 0 1206 156 18 58 chrX 7607819 7608044 -169366096 + MER20 DNA MER1_type 1 216 -3 251 311 76 17 chrX 7608722 7608841 -169365299 + L2 LINE L2 3143 3268 -4 859 221 156 58 chrX 7608893 7609342 -169364798 + MLT1E LTR MaLR 1 493 -100 378 289 94 13 chrX 7609809 7609968 -169364172 - MIR3 SINE MIR -6 202 31 1917 169 14 0 chrX 7611426 7611722 -169362418 - AluJo SINE Alu -12 300 1 878 140 11 182 chrX 7611898 7612162 -169361978 - MER20 DNA MER1_type 0 219 1 1081 194 58 82 chrX 7612314 7612741 -169361399 + LTR37B LTR ERV1 45 461 -7 850 288 21 13 chrX 7612773 7613148 -169360992 - L1ME3A LINE L1 -288 5882 5505 425 283 88 19 chrX 7613193 7613416 -169360724 - L1ME3A LINE L1 -733 5429 5195 3941 265 84 32 chrX 7613487 7615605 -169358535 - L1MEc LINE L1 -3943 2272 77 232 262 0 56 chrX 7615716 7615823 -169358317 - L1ME3A LINE L1 -960 5186 5086 603 288 109 8 chrX 7616258 7616733 -169357407 - L1ME3A LINE L1 -1088 5058 4536 2194 199 128 0 chrX 7616736 7617234 -169356906 + MLT1F1 LTR MaLR 2 563 -4 551 275 185 16 chrX 7617234 7617855 -169356285 - L1ME3A LINE L1 -1609 4537 3812 2435 123 17 38 chrX 7618067 7618489 -169355651 + L1MC1 LINE L1 5916 6328 -5 182 326 0 0 chrX 7619029 7619075 -169355065 - L2 LINE L2 -18 3254 3209 947 55 16 0 chrX 7619394 7619521 -169354619 + L1PA4 LINE L1 6027 6155 0 794 167 0 0 chrX 7619531 7619651 -169354489 + FLAM_A SINE Alu 1 120 -13 29 28 0 0 chrX 7619651 7619687 -169354453 + AT_rich Low_complexity Low_complexity 1 36 0 314 277 113 19 chrX 7620593 7620752 -169353388 - MLT1K LTR MaLR -13 575 402 1960 118 83 3 chrX 7620770 7621109 -169353031 - LTR42 LTR ERVL 0 495 130 889 26 70 0 chrX 7621214 7621328 -169352812 - L1PA5 LINE L1 0 6154 6033 714 21 0 199 chrX 7621328 7621469 -169352671 + L1PA5 LINE L1 5851 5963 -191 903 113 75 0 chrX 7621469 7621628 -169352512 - LTR42 LTR ERVL -324 171 1 2306 133 24 87 chrX 7621631 7622126 -169352014 - MER31B LTR ERV1 0 466 3 241 326 34 0 chrX 7622216 7622305 -169351835 - MLT1K LTR MaLR -338 250 159 266 245 233 31 chrX 7623229 7623388 -169350752 + MIR3 SINE MIR 18 208 0 324 305 144 11 chrX 7623531 7623718 -169350422 - MIR SINE MIR -50 212 1 215 56 56 0 chrX 7624670 7624706 -169349434 + A-rich Low_complexity Low_complexity 2 39 0 1827 169 4 0 chrX 7624794 7625073 -169349067 - AluJb SINE Alu -32 280 1 336 274 39 10 chrX 7625271 7625373 -169348767 + MIR SINE MIR 88 192 -70 2094 129 0 10 chrX 7625374 7625677 -169348463 + AluSx SINE Alu 4 303 -9 1898 154 54 153 chrX 7626189 7626746 -169347394 + MLT1D LTR MaLR 4 505 0 770 148 12 24 chrX 7627174 7627343 -169346797 + GA-rich Low_complexity Low_complexity 3 169 0 189 195 0 0 chrX 7627913 7627954 -169346186 + CT-rich Low_complexity Low_complexity 3 43 0 680 301 27 34 chrX 7628373 7628635 -169345505 + MIR SINE MIR 3 262 0 25 0 0 0 chrX 7629517 7629542 -169344598 + AT_rich Low_complexity Low_complexity 1 25 0 641 208 14 0 chrX 7630839 7630983 -169343157 - Tigger6a DNA MER2_type 0 1083 938 3917 139 15 71 chrX 7630983 7631467 -169342673 + L1PB4 LINE L1 4824 5334 -822 2161 104 3 3 chrX 7631467 7631764 -169342376 + AluSg SINE Alu 1 297 -13 3917 139 15 71 chrX 7631764 7632240 -169341900 + L1PB4 LINE L1 5334 5700 -456 12410 30 1 3 chrX 7632240 7634505 -169339635 + L1PA4 LINE L1 3875 6155 0 3917 139 15 71 chrX 7634505 7634823 -169339317 + L1PB4 LINE L1 5700 6034 -122 5724 110 16 2 chrX 7634831 7636371 -169337769 - L1PA14 LINE L1 -9 6152 4586 2335 78 0 0 chrX 7636371 7636692 -169337448 + AluY SINE Alu 1 321 0 5724 110 16 2 chrX 7636692 7636968 -169337172 - L1PA14 LINE L1 -1575 4586 4315 692 168 32 0 chrX 7636968 7637091 -169337049 + L1PB4 LINE L1 6022 6150 -6 2919 193 96 10 chrX 7637098 7637777 -169336363 - Tigger6a DNA MER2_type -130 953 217 33 66 0 0 chrX 7638039 7638100 -169336040 + AT_rich Low_complexity Low_complexity 1 61 0 3331 119 47 4 chrX 7638244 7638782 -169335358 + MER34B LTR ERV1 3 563 -2 260 286 60 91 chrX 7638931 7639130 -169335010 + L2 LINE L2 3030 3222 -50 391 309 15 15 chrX 7639147 7639283 -169334857 - MIR SINE MIR -4 258 123 2308 113 0 3 chrX 7639508 7639809 -169334331 + AluSx SINE Alu 1 300 -12 267 312 26 0 chrX 7640113 7640190 -169333950 - LTR67 LTR ERVL -363 194 116 212 0 36 0 chrX 7640406 7640434 -169333706 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 643 279 73 21 chrX 7641414 7641647 -169332493 - MIR SINE MIR -10 252 8 273 247 0 49 chrX 7642583 7642664 -169331476 - MLT1K LTR MaLR -329 259 183 253 200 215 0 chrX 7642705 7642770 -169331370 - L2 LINE L2 0 3313 3235 2030 123 112 29 chrX 7642967 7643350 -169330790 - MSTA LTR MaLR -7 421 7 335 294 67 73 chrX 7644076 7644341 -169329799 - HsTC2 DNA Tc2 -249 1649 1209 1028 118 10 98 chrX 7644341 7644468 -169329672 - MER5A DNA MER1_type -3 186 82 2143 118 14 0 chrX 7644468 7644764 -169329376 + AluSx SINE Alu 1 300 -12 1028 118 10 98 chrX 7644764 7644839 -169329301 - MER5A DNA MER1_type -107 82 2 335 294 67 73 chrX 7644839 7644917 -169329223 - HsTC2 DNA Tc2 -689 1209 1132 245 315 0 0 chrX 7645183 7645272 -169328868 - HsTC2 DNA Tc2 -1031 867 779 1375 137 12 4 chrX 7645278 7645519 -169328621 - L1MB3 LINE L1 -2 6181 5939 278 303 285 18 chrX 7646634 7646799 -169327341 - MIR SINE MIR -3 259 51 193 245 20 0 chrX 7646813 7646862 -169327278 - L2 LINE L2 0 3313 3264 291 364 9 9 chrX 7646995 7647105 -169327035 - MIR SINE MIR -148 114 5 2093 143 10 56 chrX 7647114 7647506 -169326634 + MLT1A2 LTR MaLR 1 374 0 2254 156 54 12 chrX 7647525 7647990 -169326150 + L1MB7 LINE L1 5682 6164 -20 344 267 17 25 chrX 7648004 7648124 -169326016 + MIR SINE MIR 135 253 -9 523 212 126 81 chrX 7650782 7650980 -169323160 - MIR SINE MIR -3 259 53 201 121 0 0 chrX 7651273 7651306 -169322834 + (TC)n Simple_repeat Simple_repeat 2 34 0 901 221 74 125 chrX 7651497 7652049 -169322091 + MLT1H1 LTR MaLR 32 555 0 311 262 107 8 chrX 7652607 7652729 -169321411 - L2 LINE L2 -14 3299 3166 31 0 0 0 chrX 7652931 7652962 -169321178 + AT_rich Low_complexity Low_complexity 1 31 0 285 54 0 0 chrX 7653056 7653093 -169321047 + tRNA-Val-GTG tRNA tRNA 1 37 -39 486 329 47 22 chrX 7653427 7653746 -169320394 + LTR16C LTR ERVL 149 475 -16 1292 183 179 63 chrX 7654020 7654335 -169319805 + L1MD2 LINE L1 5814 6204 -155 432 0 0 0 chrX 7654335 7654383 -169319757 + (CA)n Simple_repeat Simple_repeat 2 49 0 1292 183 179 63 chrX 7654383 7654543 -169319597 + L1MD2 LINE L1 6204 6344 -15 281 206 165 10 chrX 7655490 7655587 -169318553 - L2 LINE L2 0 3313 3202 439 211 99 37 chrX 7656054 7656212 -169317928 - LTR33A LTR ERVL -339 184 17 2237 121 44 22 chrX 7656212 7656624 -169317516 + MSTB LTR MaLR 1 421 -5 294 253 95 0 chrX 7656642 7656737 -169317403 - LTR33A LTR ERVL -151 372 269 397 306 120 24 chrX 7657456 7657665 -169316475 + MIR SINE MIR 28 256 -6 317 280 44 26 chrX 7657809 7657936 -169316204 + MER5A DNA MER1_type 10 148 -40 378 192 13 46 chrX 7659140 7659291 -169314849 + GA-rich Low_complexity Low_complexity 3 148 0 1211 213 47 52 chrX 7659295 7659600 -169314540 + MLT2B2 LTR ERVL 175 480 -35 345 47 0 0 chrX 7659600 7659643 -169314497 + (CA)n Simple_repeat Simple_repeat 1 43 0 306 0 0 0 chrX 7659642 7659676 -169314464 + (TC)n Simple_repeat Simple_repeat 2 35 0 * 1211 213 47 52 chrX 7659643 7659713 -169314427 + MLT2B2 LTR ERVL 480 515 0 1954 154 113 10 chrX 7659714 7660104 -169314036 + MLT1D LTR MaLR 76 505 0 1560 146 15 116 chrX 7660619 7660947 -169313193 - AluJb SINE Alu -17 295 1 1931 250 68 46 chrX 7661109 7661756 -169312384 - MER21B LTR ERV1 -105 758 98 2224 64 3 3 chrX 7662651 7662934 -169311206 - L1PB1 LINE L1 -7 6144 5862 349 262 64 40 chrX 7663435 7663637 -169310503 + ERVL LTR ERVL 2243 2449 -3315 544 235 87 37 chrX 7663849 7664036 -169310104 - L1M2 LINE L1 -4221 1995 1608 306 206 137 14 chrX 7664182 7664328 -169309812 - MER113 DNA MER1_type? -354 167 4 1852 177 0 16 chrX 7664345 7664662 -169309478 + AluJb SINE Alu 1 312 0 349 302 94 6 chrX 7664754 7664913 -169309227 - MIR3 SINE MIR -7 201 29 935 139 0 26 chrX 7665036 7665187 -169308953 - MER6B DNA MER2_type -63 147 1 293 265 77 61 chrX 7667269 7667450 -169306690 - HAL1 LINE L1 -5 2502 2319 2542 222 42 29 chrX 7668109 7668727 -169305413 - MLT1E2 LTR MaLR 0 626 1 201 289 31 72 chrX 7668767 7668864 -169305276 - L2 LINE L2 -603 2711 2619 1574 205 15 82 chrX 7669858 7670249 -169303891 - MLT1A1 LTR MaLR 0 365 1 2274 93 0 17 chrX 7670398 7670700 -169303440 - AluSx SINE Alu -15 297 1 2010 176 113 0 chrX 7671132 7671512 -169302628 + MSTB LTR MaLR 1 423 -3 205 316 18 0 chrX 7671983 7672040 -169302100 + (TGGA)n Simple_repeat Simple_repeat 4 61 0 1557 133 0 0 chrX 7672993 7673211 -169300929 + AluSg/x SINE Alu 83 300 -12 1088 250 106 66 chrX 7673413 7673631 -169300509 - MLT1H1 LTR MaLR 0 555 347 2313 110 0 3 chrX 7673631 7673931 -169300209 + AluSx SINE Alu 11 309 -3 1088 250 106 66 chrX 7673931 7674255 -169299885 - MLT1H1 LTR MaLR -208 347 17 1058 249 198 8 chrX 7674564 7674942 -169299198 - MLT1J2 LTR MaLR 0 450 1 324 0 0 0 chrX 7675294 7675330 -169298810 + (TG)n Simple_repeat Simple_repeat 1 36 0 582 285 75 69 chrX 7675815 7676148 -169297992 - MLT1I LTR MaLR -4 405 71 474 65 0 0 chrX 7676273 7676335 -169297805 + (TG)n Simple_repeat Simple_repeat 2 63 0 3021 116 11 0 chrX 7677774 7678215 -169295925 - L1P LINE L1 -1771 4375 3930 1797 84 0 0 chrX 7678215 7678449 -169295691 + L1PA10 LINE L1 5919 6156 -12 425 303 161 19 chrX 7679761 7680022 -169294118 - LTR16A LTR ERVL -8 442 145 409 260 133 46 chrX 7680224 7680420 -169293720 + MLT1K LTR MaLR 216 428 -160 319 311 67 20 chrX 7680692 7680971 -169293169 + LTR16C LTR ERVL 175 491 0 299 288 25 0 chrX 7680971 7681046 -169293094 + MLT1K LTR MaLR 440 516 -72 243 174 0 0 chrX 7681373 7681427 -169292713 - L1M4 LINE L1 -3871 2511 2458 353 231 0 0 chrX 7683028 7683093 -169291047 + MER58 DNA MER1_type 1 65 -321 599 207 9 0 chrX 7683560 7683671 -169290469 + MER58 DNA MER1_type 2309 2420 0 289 183 24 49 chrX 7684118 7684200 -169289940 - MER20 DNA MER1_type -52 167 88 * 1877 206 17 49 chrX 7684186 7684658 -169289482 + MLT1C LTR MaLR 11 467 0 749 136 27 0 chrX 7684658 7684768 -169289372 - MER20 DNA MER1_type -106 113 1 509 310 41 29 chrX 7685298 7685543 -169288597 + MIR SINE MIR 15 262 0 2187 175 66 84 chrX 7686042 7686172 -169287968 - MLT1D LTR MaLR 0 505 374 18653 27 8 0 chrX 7686172 7689106 -169285034 + L1PA4 LINE L1 3206 6152 -3 2187 175 66 84 chrX 7689106 7689489 -169284651 - MLT1D LTR MaLR -131 374 1 833 218 122 48 chrX 7689863 7690134 -169284006 + LTR16C LTR ERVL 201 491 0 665 227 101 45 chrX 7690596 7690794 -169283346 + MER63A DNA MER1_type 1 209 -1 1360 209 118 34 chrX 7690832 7691239 -169282901 - MLT1J1 LTR MaLR -5 441 1 520 267 8 8 chrX 7691304 7691435 -169282705 - MIR SINE MIR -112 150 20 2220 159 109 17 chrX 7691848 7692314 -169281826 - MER34 LTR ERV1 -33 509 1 812 246 11 0 chrX 7694503 7694690 -169279450 - MER5A DNA MER1_type 0 189 1 467 240 55 9 chrX 7694826 7694986 -169279154 + MER5B DNA MER1_type 1 179 -10 1015 173 8 130 chrX 7695374 7695628 -169278512 - MER58A DNA MER1_type 0 224 2 723 146 184 13 chrX 7696158 7696316 -169277824 + MER20 DNA MER1_type 29 213 -6 232 316 10 41 chrX 7696602 7696700 -169277440 - MER5A DNA MER1_type -85 104 10 1926 141 13 20 chrX 7696954 7697253 -169276887 - AluJo SINE Alu -15 297 1 352 306 25 50 chrX 7698731 7698930 -169275210 - MIR SINE MIR -21 241 48 2311 121 0 3 chrX 7699001 7699314 -169274826 + AluSx SINE Alu 1 312 0 587 238 331 58 chrX 7699373 7699594 -169274546 + L2 LINE L2 2199 2359 -954 2135 139 21 3 chrX 7699594 7699932 -169274208 - MER2 DNA MER2_type 0 344 1 587 238 331 58 chrX 7699932 7700000 -169274140 + L2 LINE L2 2359 2407 -906 2362 88 0 7 chrX 7700000 7700296 -169273844 - AluSx SINE Alu -17 295 2 587 238 331 58 chrX 7700296 7700640 -169273500 + L2 LINE L2 2407 3005 -308 330 256 169 79 chrX 7703481 7703836 -169270304 + MLT1J LTR MaLR 125 511 0 592 257 94 18 chrX 7705401 7705749 -169268391 + MLT1J2 LTR MaLR 24 427 -23 270 360 54 9 chrX 7706050 7706161 -169267979 + MER91C DNA MER1_type 25 140 0 815 279 131 48 chrX 7706845 7707256 -169266884 + L1MC4 LINE L1 7082 7572 -470 319 137 0 0 chrX 7707256 7707307 -169266833 + L1PA16 LINE L1 6107 6157 -9 815 279 131 48 chrX 7707307 7707417 -169266723 + L1MC4 LINE L1 7572 7671 -371 3565 129 24 18 chrX 7707530 7708127 -169266013 + L1MC2 LINE L1 5707 6306 -38 1086 176 0 5 chrX 7708607 7708817 -169265323 + L1MB7 LINE L1 5183 5391 -755 917 125 0 7 chrX 7708811 7708936 -169265204 + L1MA2 LINE L1 6143 6268 -36 * 4339 28 0 0 chrX 7708936 7709433 -169264707 + L1PA5 LINE L1 5646 6145 -9 347 121 0 0 chrX 7709453 7709511 -169264629 + L1MA1 LINE L1 6245 6302 0 1176 154 18 32 chrX 7709756 7709976 -169264164 - MER20 DNA MER1_type 0 219 3 206 295 45 62 chrX 7710478 7710590 -169263550 + MIR SINE MIR 36 145 -63 1755 101 57 10 chrX 7710590 7710887 -169263253 + L1MA3 LINE L1 5995 6305 0 2113 167 53 7 chrX 7710903 7711316 -169262824 + L1MB7 LINE L1 5725 6156 -28 * 9368 123 8 14 chrX 7711301 7712773 -169261367 - L1P LINE L1 -2023 4123 2661 6678 77 14 8 chrX 7712773 7714230 -169259910 + L1PA10 LINE L1 4666 6150 -18 180 0 0 0 chrX 7714230 7714250 -169259890 + (TTAAA)n Simple_repeat Simple_repeat 1 20 0 468 35 0 0 chrX 7714485 7714543 -169259597 + (CA)n Simple_repeat Simple_repeat 2 59 0 833 178 10 56 chrX 7715666 7715863 -169258277 + MER5A DNA MER1_type 1 188 -1 1145 175 38 0 chrX 7716136 7716347 -169257793 - MER20 DNA MER1_type 0 219 1 1470 158 60 32 chrX 7717177 7717461 -169256679 - AluJo SINE Alu -20 292 1 295 299 13 0 chrX 7719775 7719852 -169254288 + L2 LINE L2 3188 3265 -7 254 295 71 18 chrX 7720269 7720381 -169253759 + L2 LINE L2 3196 3313 0 264 226 139 29 chrX 7720519 7720656 -169253484 + L1ME4a LINE L1 5968 6119 -2 2150 119 10 0 chrX 7720794 7721089 -169253051 + AluSx SINE Alu 1 298 -14 1100 191 10 24 chrX 7721292 7721501 -169252639 + MER20 DNA MER1_type 1 206 -13 1106 123 0 0 chrX 7721569 7721724 -169252416 + FRAM SINE Alu 1 152 -24 198 0 0 0 chrX 7721917 7721939 -169252201 + (TA)n Simple_repeat Simple_repeat 1 22 0 656 75 0 0 chrX 7722138 7722218 -169251922 - MADE1 DNA Mariner 0 80 1 226 318 19 28 chrX 7722229 7722336 -169251804 - L3b LINE CR1 -368 1215 1110 386 304 158 0 chrX 7724500 7724658 -169249482 + MER5A DNA MER1_type 7 189 0 2339 135 14 3 chrX 7725613 7725975 -169248165 + MER47A DNA MER2_type 1 366 0 366 217 24 12 chrX 7726004 7726087 -169248053 + MLT1I LTR MaLR 318 401 -8 2354 115 0 0 chrX 7727541 7727853 -169246287 - AluSx SINE Alu 0 312 1 27 0 0 0 chrX 7727853 7727880 -169246260 + AT_rich Low_complexity Low_complexity 1 27 0 2168 121 27 0 chrX 7727889 7728186 -169245954 + AluJb SINE Alu 1 305 -7 636 197 8 0 chrX 7728195 7728312 -169245828 + FLAM_C SINE Alu 1 118 -15 35 0 0 0 chrX 7728312 7728347 -169245793 + AT_rich Low_complexity Low_complexity 1 35 0 540 217 112 28 chrX 7728383 7728526 -169245614 + L1ME3A LINE L1 6007 6161 -9 2572 153 42 0 chrX 7728548 7728998 -169245142 + L1MB5 LINE L1 5706 6174 0 1494 179 4 12 chrX 7729179 7729436 -169244704 + AluJo SINE Alu 6 260 -52 379 142 85 0 chrX 7729444 7729550 -169244590 + GA-rich Low_complexity Low_complexity 3 117 0 314 271 115 8 chrX 7729727 7729849 -169244291 + L2 LINE L2 3128 3262 -10 443 270 75 35 chrX 7729950 7730150 -169243990 + MIR SINE MIR 49 256 -6 1552 204 8 66 chrX 7731117 7731479 -169242661 + MER58B DNA MER1_type 1 341 0 2303 115 0 3 chrX 7731616 7731929 -169242211 + AluSx SINE Alu 1 312 0 2102 129 0 35 chrX 7732918 7733229 -169240911 + AluJb SINE Alu 1 300 -12 3026 131 24 24 chrX 7733230 7733336 -169240804 + MER34 LTR ERV1 13 118 -424 2450 87 0 0 chrX 7733336 7733645 -169240495 - AluY SINE Alu -2 309 1 3026 131 24 24 chrX 7733645 7734042 -169240098 + MER34 LTR ERV1 117 516 -26 724 179 8 134 chrX 7734083 7734329 -169239811 + MER58C DNA MER1_type 1 215 0 732 209 35 0 chrX 7735015 7735187 -169238953 - MER5B DNA MER1_type 0 178 1 2033 128 3 17 chrX 7736168 7736346 -169237794 - AluJo SINE Alu 0 312 138 2239 120 3 0 chrX 7736346 7736645 -169237495 - AluSx SINE Alu -12 300 1 2033 128 3 17 chrX 7736645 7736762 -169237378 - AluJo SINE Alu -174 138 21 1071 172 0 0 chrX 7736847 7737010 -169237130 - FRAM SINE Alu -13 163 1 2040 157 7 0 chrX 7737848 7738153 -169235987 + AluJb SINE Alu 1 307 -5 1441 124 29 5 chrX 7738520 7738729 -169235411 + AluJo SINE Alu 7 220 -92 255 184 0 20 chrX 7738729 7738778 -169235362 + FLAM SINE Alu 86 133 0 1923 116 59 33 chrX 7738786 7739089 -169235051 + AluSx SINE Alu 1 311 -1 768 206 65 0 chrX 7740526 7740710 -169233430 + MIR SINE MIR 33 228 -34 575 183 80 51 chrX 7741378 7741553 -169232587 + MER5A DNA MER1_type 9 188 -1 3947 153 48 7 chrX 7742637 7743362 -169230778 + L1MB7 LINE L1 5429 6183 -1 499 264 88 23 chrX 7744255 7744471 -169229669 - MER46C DNA MER2_type -107 231 2 242 267 212 0 chrX 7744783 7744929 -169229211 + L2 LINE L2 1589 1765 -1549 1214 206 5 0 chrX 7745007 7745225 -169228915 + MER58A DNA MER1_type 4 222 -2 398 300 57 4 chrX 7745232 7745462 -169228678 + L2 LINE L2 1953 2194 -1120 258 245 132 9 chrX 7745573 7745679 -169228461 - MER117 DNA MER1_type -40 157 39 * 262 299 90 0 chrX 7745650 7745784 -169228356 - MER117 DNA MER1_type -47 150 5 329 307 132 19 chrX 7745929 7746481 -169227659 + L2 LINE L2 2485 3085 -187 252 0 0 0 chrX 7746564 7746592 -169227548 + (TG)n Simple_repeat Simple_repeat 2 29 0 244 297 36 36 chrX 7746690 7746801 -169227339 + L2 LINE L2 3203 3313 0 354 291 21 43 chrX 7746825 7746966 -169227174 - L2 LINE L2 0 3313 3176 1276 181 115 44 chrX 7746997 7747267 -169226873 + AluJo SINE Alu 1 289 -23 2174 165 3 0 chrX 7747268 7747626 -169226514 + L1MB8 LINE L1 5627 5985 -193 757 145 26 62 chrX 7748580 7748773 -169225367 - MER33 DNA MER1_type -8 355 170 613 181 10 1 chrX 7748756 7748865 -169225275 - MER33 DNA MER1_type -250 74 1 * 211 250 0 0 chrX 7748969 7749017 -169225123 + L2 LINE L2 3247 3294 -19 204 286 0 18 chrX 7749908 7749964 -169224176 + GA-rich Low_complexity Low_complexity 3 57 0 705 256 154 28 chrX 7750469 7750793 -169223347 + LTR16C LTR ERVL 112 476 -15 218 118 0 0 chrX 7751976 7752010 -169222130 - L2 LINE L2 -12 3301 3268 1160 178 41 18 chrX 7752128 7752347 -169221793 + MER58A DNA MER1_type 1 224 0 283 259 12 0 chrX 7752644 7752725 -169221415 - MIR SINE MIR -11 251 170 452 198 9 28 chrX 7752730 7752836 -169221304 - MER20 DNA MER1_type 0 219 116 334 305 19 32 chrX 7752839 7752993 -169221147 - MIR SINE MIR -98 164 13 210 260 52 26 chrX 7754548 7754625 -169219515 + MER91C DNA MER1_type 37 115 -25 1930 81 0 0 chrX 7755832 7756067 -169218073 - AluSc SINE Alu -74 235 1 4412 186 34 17 chrX 7757345 7758672 -169215468 + L1MB7 LINE L1 4831 6184 0 1747 147 0 52 chrX 7758682 7758988 -169215152 + AluJb SINE Alu 1 290 -22 513 213 0 39 chrX 7759158 7759285 -169214855 - L2 LINE L2 0 3313 3192 2260 143 75 6 chrX 7759362 7759813 -169214327 - MER31A LTR ERV1 0 661 1 426 318 42 5 chrX 7761081 7761270 -169212870 + MER117 DNA MER1_type 2 197 0 180 315 54 43 chrX 7761787 7761879 -169212261 + L2 LINE L2 3172 3264 -49 2028 146 6 19 chrX 7762294 7762610 -169211530 - AluJb SINE Alu 0 312 1 930 171 59 18 chrX 7763269 7763491 -169210649 - L1MA7 LINE L1 0 6291 6061 29 0 0 0 chrX 7763495 7763524 -169210616 + AT_rich Low_complexity Low_complexity 1 29 0 2144 188 71 29 chrX 7763573 7764052 -169210088 - MLT1D LTR MaLR -2 503 5 327 260 50 72 chrX 7764894 7765075 -169209065 + L1ME1 LINE L1 910 1086 -5298 803 147 0 0 chrX 7765547 7765663 -169208477 + FLAM_C SINE Alu 1 116 -27 635 244 28 28 chrX 7765830 7766006 -169208134 + MER58C DNA MER1_type 39 214 -1 570 286 127 71 chrX 7766131 7766621 -169207519 + L1ME1 LINE L1 3617 4133 -2249 3755 209 32 43 chrX 7766705 7767101 -169207039 + L1ME1 LINE L1 4537 4936 -1466 2483 64 0 0 chrX 7767101 7767399 -169206741 + AluY SINE Alu 1 298 -13 3755 209 32 43 chrX 7767399 7768069 -169206071 + L1ME1 LINE L1 4936 5612 -790 3223 69 30 7 chrX 7768069 7768503 -169205637 - MLT2A1 LTR ERVL 0 444 1 3755 209 32 43 chrX 7768503 7768812 -169205328 + L1ME1 LINE L1 5612 5923 -479 2009 139 3 7 chrX 7768812 7769113 -169205027 + AluJb SINE Alu 1 300 -12 3755 209 32 43 chrX 7769113 7769618 -169204522 + L1ME1 LINE L1 5923 6394 -8 309 306 36 0 chrX 7769618 7769729 -169204411 + L1ME1 LINE L1 5985 6099 -303 2040 130 0 33 chrX 7769938 7770237 -169203903 + AluJb SINE Alu 3 291 -21 961 188 34 19 chrX 7771860 7772067 -169202073 - MER58A DNA MER1_type 0 224 15 423 247 82 29 chrX 7772112 7772282 -169201858 + MER112 DNA MER1_type 17 195 -65 2386 85 0 19 chrX 7775350 7775667 -169198473 + AluSx SINE Alu 1 311 -1 893 210 15 25 chrX 7775851 7776051 -169198089 - MER58A DNA MER1_type 0 224 27 198 196 22 22 chrX 7776120 7776166 -169197974 - MIR SINE MIR -6 256 211 318 297 0 0 chrX 7777069 7777143 -169196997 + MIR SINE MIR 24 97 -111 4994 81 21 11 chrX 7777171 7777887 -169196253 + L1MA1 LINE L1 5573 6295 -7 26 0 0 0 chrX 7777900 7777926 -169196214 + AT_rich Low_complexity Low_complexity 1 26 0 207 100 0 0 chrX 7778600 7778630 -169195510 + (TGAA)n Simple_repeat Simple_repeat 4 33 0 333 311 33 0 chrX 7778636 7778758 -169195382 + MIR SINE MIR 131 256 -6 2173 151 15 15 chrX 7780575 7780622 -169193518 - L1MB5 LINE L1 0 6174 6128 762 142 0 55 chrX 7780622 7780749 -169193391 + FLAM_C SINE Alu 1 120 -13 2173 151 15 15 chrX 7780749 7781099 -169193041 - L1MB5 LINE L1 -45 6129 5777 211 295 129 65 chrX 7781231 7781370 -169192770 + MIR3 SINE MIR 45 192 -16 262 333 145 0 chrX 7782877 7782994 -169191146 - MIR SINE MIR -74 188 55 180 0 0 0 chrX 7783135 7783155 -169190985 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 182 31 0 62 chrX 7783173 7783205 -169190935 + (CAAAAA)n Simple_repeat Simple_repeat 2 31 0 907 174 82 31 chrX 7783850 7784046 -169190094 + MER3 DNA MER1_type 4 209 0 515 278 93 49 chrX 7784122 7784510 -169189630 - MLT1L LTR MaLR -11 604 200 1217 169 47 0 chrX 7785997 7786210 -169187930 - MER58A DNA MER1_type 0 224 2 1068 227 28 0 chrX 7786696 7786912 -169187228 + MER58A DNA MER1_type 1 222 -2 1210 148 5 49 chrX 7787801 7788024 -169186116 + AluJb SINE Alu 89 301 -11 262 340 120 5 chrX 7789351 7789542 -169184598 - L2 LINE L2 -494 2820 2608 842 271 25 60 chrX 7789846 7790249 -169183891 - L1MC4a LINE L1 -1896 5912 5524 1163 194 9 0 chrX 7790410 7790626 -169183514 + MER20 DNA MER1_type 1 218 -1 1944 178 140 88 chrX 7791160 7791761 -169182379 - MLT1E1 LTR MaLR -6 648 17 2072 129 9 31 chrX 7791798 7791830 -169182310 - AluSx SINE Alu -1 311 280 438 20 0 0 chrX 7791830 7791881 -169182259 + (TG)n Simple_repeat Simple_repeat 2 52 0 252 0 0 0 chrX 7791880 7791908 -169182232 + (TA)n Simple_repeat Simple_repeat 1 28 0 * 2072 129 9 31 chrX 7791881 7792193 -169181947 - AluSx SINE Alu -32 280 1 248 316 86 29 chrX 7792332 7792506 -169181634 - MLT1H LTR MaLR -146 403 220 449 273 134 21 chrX 7793255 7793449 -169180691 + MIR SINE MIR 47 262 0 23 0 0 0 chrX 7793893 7793916 -169180224 + AT_rich Low_complexity Low_complexity 1 23 0 261 0 0 0 chrX 7795928 7795957 -169178183 + (TG)n Simple_repeat Simple_repeat 2 30 0 243 88 0 0 chrX 7795978 7796012 -169178128 + (TA)n Simple_repeat Simple_repeat 2 35 0 520 231 93 56 chrX 7796891 7797107 -169177033 - MLT1H LTR MaLR -300 249 26 639 185 31 87 chrX 7797873 7798068 -169176072 + MER20 DNA MER1_type 3 186 -33 1378 156 15 0 chrX 7798468 7798731 -169175409 - L1MD3 LINE L1 0 7995 7729 208 333 14 0 chrX 7798932 7799001 -169175139 - L2 LINE L2 0 3313 3244 416 307 99 40 chrX 7799185 7799595 -169174545 - L2 LINE L2 -278 2994 2573 2087 145 3 0 chrX 7800229 7800540 -169173600 - AluSx SINE Alu 0 312 1 986 217 17 43 chrX 7800580 7800810 -169173330 + MER58A DNA MER1_type 1 224 0 251 136 12 136 chrX 7802337 7802418 -169171722 - MLT1H LTR MaLR 0 549 479 1155 199 4 18 chrX 7802516 7802742 -169171398 + MER58A DNA MER1_type 1 223 -1 185 333 18 0 chrX 7803090 7803147 -169170993 - L2 LINE L2 -5 3308 3251 * 697 252 78 18 chrX 7803120 7803314 -169170826 - MIR SINE MIR -30 232 22 1134 219 0 0 chrX 7803314 7803538 -169170602 - MER58A DNA MER1_type 0 224 1 697 252 78 18 chrX 7803538 7803561 -169170579 - MIR SINE MIR -240 22 2 2116 100 61 50 chrX 7805177 7805537 -169168603 - THE1B LTR MaLR 0 364 1 241 150 0 0 chrX 7805835 7805875 -169168265 - MLT2E LTR ERVL -544 84 45 188 315 0 37 chrX 7806516 7806570 -169167570 + MIR SINE MIR 47 98 -164 295 271 172 0 chrX 7806579 7806701 -169167439 - MIR SINE MIR -3 259 117 997 181 34 15 chrX 7806843 7807047 -169167093 - MER3 DNA MER1_type -1 208 1 850 185 99 6 chrX 7810282 7810444 -169163696 + MER45A DNA AcHobo 1 177 -1 1008 199 28 9 chrX 7810927 7811138 -169163002 + MER20 DNA MER1_type 1 215 -4 21 0 0 0 chrX 7811275 7811296 -169162844 + AT_rich Low_complexity Low_complexity 1 21 0 613 211 111 6 chrX 7811988 7812159 -169161981 + MER5A DNA MER1_type 1 189 0 312 91 0 0 chrX 7812388 7812432 -169161708 + (T)n Simple_repeat Simple_repeat 1 44 0 1116 211 9 47 chrX 7812476 7812708 -169161432 - MER58A DNA MER1_type 0 224 2 251 360 58 58 chrX 7813682 7813943 -169160197 + L2 LINE L2 1711 1971 -1343 633 290 94 86 chrX 7813950 7814687 -169159453 + L2 LINE L2 2146 2888 -426 186 279 188 55 chrX 7814853 7815018 -169159122 + L2 LINE L2 3122 3308 -5 25 31 0 0 chrX 7815133 7815165 -169158975 + AT_rich Low_complexity Low_complexity 1 32 0 3054 228 88 34 chrX 7815805 7816070 -169158070 + L1M4 LINE L1 2204 2453 -3693 1876 201 48 38 chrX 7816070 7816462 -169157678 + MSTD LTR MaLR 1 396 0 3054 228 88 34 chrX 7816462 7816511 -169157629 + L1M4 LINE L1 2453 2498 -3648 1937 157 3 0 chrX 7816511 7816792 -169157348 + AluSx SINE Alu 5 289 -23 234 0 0 0 chrX 7816792 7816818 -169157322 + (GGA)n Simple_repeat Simple_repeat 3 28 0 1937 157 3 0 chrX 7816818 7816836 -169157304 + AluSx SINE Alu 289 305 -7 3054 228 88 34 chrX 7816836 7817661 -169156479 + L1M4 LINE L1 2498 3414 -2732 2304 78 0 45 chrX 7817661 7817970 -169156170 + AluSg SINE Alu 1 295 -15 3054 228 88 34 chrX 7817970 7818016 -169156124 + L1M4 LINE L1 3414 3456 -2690 2101 132 0 0 chrX 7818016 7818312 -169155828 + AluSx SINE Alu 1 296 -16 1515 204 102 1 chrX 7818360 7818699 -169155441 + L1ME1 LINE L1 5805 6333 -1 250 304 92 54 chrX 7818750 7819414 -169154726 + L1ME LINE L1 3287 3975 -2171 327 332 43 32 chrX 7819611 7819798 -169154342 + L1ME LINE L1 4620 4808 -1338 264 307 67 57 chrX 7820060 7820360 -169153780 + L1ME LINE L1 5295 5594 -527 2262 95 7 3 chrX 7820373 7820668 -169153472 + AluSq SINE Alu 1 296 -17 687 189 237 0 chrX 7820724 7820893 -169153247 - MER58C DNA MER1_type -6 209 1 2030 78 0 12 chrX 7821055 7821312 -169152828 + AluY SINE Alu 35 288 -23 2932 199 34 27 chrX 7821445 7822032 -169152108 + MLT1E LTR MaLR 1 591 -2 1057 166 37 32 chrX 7823927 7824144 -169149996 - MER20 DNA MER1_type 0 219 2 260 141 58 16 chrX 7824570 7824691 -169149449 + (TTAAA)n Simple_repeat Simple_repeat 2 127 0 294 350 41 41 chrX 7825238 7825361 -169148779 + L2 LINE L2 3141 3263 -9 278 169 15 0 chrX 7825362 7825427 -169148713 + GA-rich Low_complexity Low_complexity 3 68 0 342 228 44 9 chrX 7827738 7827852 -169146288 - L1ME4a LINE L1 -3 6118 6001 1284 149 13 53 chrX 7828191 7828419 -169145721 + MER20 DNA MER1_type 1 219 0 206 164 194 30 chrX 7828577 7828644 -169145496 + MIR SINE MIR 173 250 -12 1751 205 15 3 chrX 7829406 7829737 -169144403 + MER58B DNA MER1_type 2 336 -5 404 284 135 59 chrX 7830017 7830379 -169143761 - L2 LINE L2 0 3313 2218 538 313 95 3 chrX 7830522 7830826 -169143314 + ERVL LTR ERVL 3704 4035 -1729 979 262 59 57 chrX 7830870 7831342 -169142798 + MLT1J1 LTR MaLR 1 442 -4 1868 170 36 36 chrX 7831396 7831761 -169142379 + MLT1A1 LTR MaLR 1 365 0 767 229 0 24 chrX 7831814 7831980 -169142160 - MLT1E LTR MaLR -429 164 3 21 71 0 0 chrX 7832330 7832372 -169141768 + AT_rich Low_complexity Low_complexity 1 42 0 297 75 0 0 chrX 7832480 7832520 -169141620 + (TTA)n Simple_repeat Simple_repeat 3 42 0 1477 198 215 73 chrX 7834038 7834559 -169139581 + MLT1G1 LTR MaLR 1 595 0 763 301 64 61 chrX 7834798 7835173 -169138967 - MER115 DNA AcHobo -259 434 59 182 390 21 0 chrX 7835469 7835564 -169138576 + MIR SINE MIR 25 121 -87 1322 204 14 0 chrX 7835779 7836000 -169138140 - MER58A DNA MER1_type 0 224 1 29 0 0 0 chrX 7836420 7836449 -169137691 + AT_rich Low_complexity Low_complexity 1 29 0 209 360 22 0 chrX 7836560 7836649 -169137491 - L3 LINE CR1 -5 1572 1482 473 260 7 47 chrX 7837282 7837432 -169136708 + MIR SINE MIR 68 211 -51 633 278 150 50 chrX 7837434 7837502 -169136638 + MLT1K LTR MaLR 1 61 -527 2304 235 72 30 chrX 7837502 7838069 -169136071 - MLT1E LTR MaLR 0 593 3 633 278 150 50 chrX 7838069 7838381 -169135759 + MLT1K LTR MaLR 61 419 -169 8095 21 11 0 chrX 7838678 7839568 -169134572 + L1PA4 LINE L1 5254 6153 -2 21 57 0 0 chrX 7843706 7843741 -169130399 + AT_rich Low_complexity Low_complexity 1 35 0 2193 122 0 0 chrX 7843789 7844084 -169130056 + AluSx SINE Alu 1 295 -17 984 244 37 9 chrX 7844109 7844326 -169129814 - MER58A DNA MER1_type -1 223 1 1574 186 19 6 chrX 7844335 7844653 -169129487 - MER33 DNA MER1_type -1 323 2 2467 83 3 3 chrX 7845610 7845923 -169128217 + AluSp SINE Alu 1 313 0 2029 190 47 30 chrX 7846131 7846558 -169127582 + MER90 LTR ERV1 1 434 -141 2937 163 39 0 chrX 7846572 7847062 -169127078 - MER68 LTR ERV1 -53 509 1 781 211 21 0 chrX 7847062 7847201 -169126939 + MER90 LTR ERV1 473 614 0 202 216 0 0 chrX 7847416 7847453 -169126687 + (CATATA)n Simple_repeat Simple_repeat 2 38 0 302 265 49 20 chrX 7847742 7847844 -169126296 - MIR SINE MIR -137 125 21 26 0 0 0 chrX 7850604 7850630 -169123510 + AT_rich Low_complexity Low_complexity 1 26 0 1918 159 30 0 chrX 7850630 7850931 -169123209 + AluJb SINE Alu 1 310 -2 213 39 0 0 chrX 7851057 7851083 -169123057 + (T)n Simple_repeat Simple_repeat 1 26 0 6148 55 0 11 chrX 7851083 7851841 -169122299 - L1PA5 LINE L1 -44 6110 5361 1872 151 0 31 chrX 7852033 7852350 -169121790 - AluJo SINE Alu -5 307 1 209 333 0 0 chrX 7852735 7852792 -169121348 + MIR3 SINE MIR 151 207 -1 6420 176 31 31 chrX 7853027 7853616 -169120524 + L1MB3 LINE L1 3839 4427 -1756 2539 51 3 16 chrX 7853616 7853931 -169120209 + AluY SINE Alu 1 311 0 6420 176 31 31 chrX 7853931 7854820 -169119320 + L1MB3 LINE L1 4427 5327 -856 2929 118 29 2 chrX 7854820 7855237 -169118903 + MSTA LTR MaLR 1 428 0 6420 176 31 31 chrX 7855237 7856093 -169118047 + L1MB3 LINE L1 5327 6182 -1 623 267 120 4 chrX 7857051 7857276 -169116864 - MLT1I LTR MaLR -2 407 157 4470 254 60 46 chrX 7858531 7859039 -169115101 + HAL1 LINE L1 2 501 -2006 1058 205 38 0 chrX 7859039 7859249 -169114891 + MER20 DNA MER1_type 1 218 -1 4470 254 60 46 chrX 7859249 7860163 -169113977 + HAL1 LINE L1 501 1456 -1051 2361 86 0 10 chrX 7860163 7860464 -169113676 + AluSc SINE Alu 1 298 -11 4470 254 60 46 chrX 7860464 7860788 -169113352 + HAL1 LINE L1 1456 1774 -733 939 289 99 46 chrX 7860863 7861448 -169112692 + HAL1 LINE L1 1889 2504 -3 242 325 77 26 chrX 7861472 7861589 -169112551 - L2 LINE L2 -22 3291 3169 303 210 120 20 chrX 7862806 7862906 -169111234 + MIR SINE MIR 20 129 -133 186 196 54 36 chrX 7864112 7864168 -169109972 - MER5A DNA MER1_type -8 181 125 345 172 0 0 chrX 7864194 7864258 -169109882 + T-rich Low_complexity Low_complexity 5 68 0 1983 147 33 0 chrX 7864268 7864568 -169109572 - AluSx SINE Alu 0 312 3 342 163 0 0 chrX 7864576 7864644 -169109496 - MER5A DNA MER1_type -118 71 4 1080 233 5 5 chrX 7864659 7864878 -169109262 + MER58A DNA MER1_type 5 223 -1 367 280 8 25 chrX 7865519 7865637 -169108503 - L2 LINE L2 -3 3269 3154 1230 46 0 0 chrX 7867212 7867364 -169106776 - L1PA4 LINE L1 -11 6144 5993 436 287 191 19 chrX 7867549 7867925 -169106215 - MLT1H1 LTR MaLR 0 555 115 3471 188 72 38 chrX 7868079 7868903 -169105237 - MER21B LTR ERV1 -11 852 1 733 59 20 0 chrX 7870961 7871063 -169103077 - L1PA4 LINE L1 -1137 5009 4906 7463 31 1 1 chrX 7871063 7872199 -169101941 + L1PA4 LINE L1 5011 6146 -9 397 153 59 0 chrX 7872933 7873018 -169101122 + MER53 DNA DNA 99 188 -1 2622 161 11 30 chrX 7873163 7873629 -169100511 + MSTB2 LTR MaLR 1 457 0 377 258 189 0 chrX 7873850 7873982 -169100158 - MER20 DNA MER1_type -56 163 7 344 258 124 0 chrX 7874141 7874238 -169099902 + L2 LINE L2 3201 3309 -4 369 0 0 0 chrX 7874373 7874414 -169099726 + (CA)n Simple_repeat Simple_repeat 1 41 0 181 268 18 71 chrX 7874546 7874602 -169099538 - L2 LINE L2 -19 3253 3201 426 274 113 62 chrX 7874789 7875179 -169098961 - MLT1J2 LTR MaLR -18 432 23 22 35 0 0 chrX 7877356 7877385 -169096755 + AT_rich Low_complexity Low_complexity 1 29 0 822 253 0 36 chrX 7877951 7878172 -169095968 - MER58A DNA MER1_type 0 224 12 440 276 10 0 chrX 7878704 7878802 -169095338 + MIR SINE MIR 4 102 -160 417 241 36 72 chrX 7878809 7878975 -169095165 + MLT1J LTR MaLR 27 186 -325 302 257 134 31 chrX 7878980 7879341 -169094799 - L1MEd LINE L1 -4843 1184 926 401 379 67 29 chrX 7879399 7879713 -169094427 - L1MEd LINE L1 -5261 858 533 399 258 115 52 chrX 7880117 7880404 -169093736 + MLT1J LTR MaLR 203 507 -4 508 192 253 61 chrX 7880563 7880792 -169093348 + MLT1H LTR MaLR 261 533 -16 23 54 0 0 chrX 7880839 7880876 -169093264 + AT_rich Low_complexity Low_complexity 1 37 0 291 380 20 0 chrX 7881248 7881348 -169092792 + MIR SINE MIR 30 131 -77 230 235 296 0 chrX 7881340 7881438 -169092702 + L2 LINE L2 3136 3262 -10 * 23 33 0 0 chrX 7881833 7881863 -169092277 + AT_rich Low_complexity Low_complexity 1 30 0 658 269 36 0 chrX 7884969 7885162 -169088978 + MLT1J2 LTR MaLR 6 205 -245 657 261 103 54 chrX 7885214 7885266 -169088874 - MLT1H LTR MaLR -16 533 485 1201 209 8 4 chrX 7885266 7885501 -169088639 + MER8 DNA MER2_type 2 237 -2 657 261 103 54 chrX 7885501 7885709 -169088431 - MLT1H LTR MaLR -64 485 260 180 0 0 0 chrX 7886295 7886315 -169087825 + (A)n Simple_repeat Simple_repeat 1 20 0 2816 140 81 0 chrX 7887101 7887468 -169086672 - L1MB5 LINE L1 -18 6156 5737 258 105 0 0 chrX 7887468 7887506 -169086634 + (TTCA)n Simple_repeat Simple_repeat 4 41 0 2816 140 81 0 chrX 7887506 7887631 -169086509 - L1MB5 LINE L1 -437 5737 5624 991 156 11 11 chrX 7887631 7887810 -169086330 + MER58A DNA MER1_type 46 224 0 2167 116 0 0 chrX 7887950 7888293 -169085847 + AluSx SINE Alu 1 312 0 359 233 0 150 chrX 7888567 7888637 -169085503 - MER5A DNA MER1_type -63 126 84 2421 74 3 7 chrX 7888637 7888946 -169085194 - AluSp SINE Alu -5 308 1 359 233 0 150 chrX 7888946 7889008 -169085132 - MER5A DNA MER1_type -105 84 14 528 228 13 0 chrX 7889040 7889159 -169084981 - MER5B DNA MER1_type -17 161 46 771 189 31 42 chrX 7890127 7890318 -169083822 + MER5A DNA MER1_type 1 189 0 298 319 92 32 chrX 7890495 7890746 -169083394 - MLT1I LTR MaLR -125 284 19 2777 94 8 3 chrX 7891653 7892026 -169082114 - THE1C LTR MaLR 0 375 1 349 274 71 9 chrX 7892188 7892301 -169081839 + MIR SINE MIR 47 166 -96 21 57 0 0 chrX 7892598 7892633 -169081507 + AT_rich Low_complexity Low_complexity 1 35 0 2520 207 65 26 chrX 7893035 7893606 -169080534 + MLT1E LTR MaLR 1 593 0 548 227 117 0 chrX 7894779 7894907 -169079233 + MLT1E LTR MaLR 1 143 -450 483 200 23 0 chrX 7895078 7895184 -169078956 + MER5A DNA MER1_type 4 112 -77 589 122 30 69 chrX 7895684 7895758 -169078382 + L1MD3 LINE L1 7870 7938 -57 2197 129 0 7 chrX 7895758 7896067 -169078073 - AluSx SINE Alu -5 307 1 589 122 30 69 chrX 7896067 7896123 -169078017 + L1MD3 LINE L1 7938 7995 0 433 238 56 134 chrX 7896561 7897061 -169077079 - LTR67 LTR ERVL -2 555 95 394 284 0 18 chrX 7897078 7897187 -169076953 - MER81 DNA DNA 0 114 8 369 0 0 0 chrX 7897567 7897608 -169076532 + (CA)n Simple_repeat Simple_repeat 1 41 0 2847 142 21 19 chrX 7897674 7898159 -169075981 + MER66B LTR ERV1 1 486 0 852 188 67 58 chrX 7898612 7898769 -169075371 - MER63A DNA MER1_type -1478 210 49 2082 141 3 0 chrX 7898769 7899060 -169075080 - AluSx SINE Alu -20 292 1 852 188 67 58 chrX 7899060 7899110 -169075030 - MER63A DNA MER1_type -1639 49 1 443 253 51 56 chrX 7899792 7899905 -169074235 - MLT1L LTR MaLR -349 266 153 1195 139 8 92 chrX 7899905 7900143 -169073997 - MER20 DNA MER1_type 0 219 2 443 253 51 56 chrX 7900143 7900207 -169073933 - MLT1L LTR MaLR -462 153 90 3739 244 46 37 chrX 7900283 7901768 -169072372 + L2 LINE L2 1816 3311 -2 621 229 21 47 chrX 7901968 7902204 -169071936 - L1MC5 LINE L1 -548 7413 7184 463 276 101 60 chrX 7902691 7902908 -169071232 - L1MDa LINE L1 -3688 2441 2216 227 264 0 0 chrX 7903413 7903485 -169070655 - L1MDa LINE L1 -4625 1504 1433 612 249 74 11 chrX 7903590 7903859 -169070281 - L1MDa LINE L1 -4869 1250 965 336 314 33 71 chrX 7903875 7904085 -169070055 - L1ME3A LINE L1 -2 6168 5967 288 227 73 92 chrX 7904146 7904419 -169069721 - L1MDa LINE L1 -5167 952 685 247 254 0 15 chrX 7904520 7904587 -169069553 - L1MDa LINE L1 -5598 521 456 244 246 0 0 chrX 7904588 7904645 -169069495 + (TTA)n Simple_repeat Simple_repeat 1 57 0 1256 308 40 4 chrX 7905046 7905550 -169068590 + L1MC4a LINE L1 5405 5926 -1882 367 281 74 15 chrX 7906861 7907064 -169067076 - L1ME3A LINE L1 -399 5763 5549 1269 258 39 53 chrX 7907169 7907657 -169066483 + LTR16C LTR ERVL 1 481 -10 2247 130 0 0 chrX 7907978 7908286 -169065854 + AluSx SINE Alu 1 308 -4 180 0 0 0 chrX 7908337 7908357 -169065783 + (T)n Simple_repeat Simple_repeat 1 20 0 14819 117 37 13 chrX 7908966 7911268 -169062872 - Tigger1 DNA MER2_type 0 2418 55 315 19 38 19 chrX 7911268 7911321 -169062819 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 14819 117 37 13 chrX 7911321 7911376 -169062764 - Tigger1 DNA MER2_type -2363 55 3 395 285 31 23 chrX 7911441 7911571 -169062569 + MIR SINE MIR 47 177 -85 307 256 88 60 chrX 7911833 7912150 -169061990 - L1ME4a LINE L1 -188 5933 5608 989 43 0 0 chrX 7912154 7912271 -169061869 - AluY SINE Alu -1 310 194 279 239 14 0 chrX 7912271 7912342 -169061798 - L1ME4a LINE L1 -506 5615 5544 818 172 18 24 chrX 7914082 7914251 -169059889 - MER20 DNA MER1_type 0 219 52 473 124 33 91 chrX 7964696 7964817 -169009323 - L1MA9 LINE L1 -298 6014 5901 290 237 122 53 chrX 7965294 7965425 -169008715 - MER5B DNA MER1_type 0 178 39 1747 167 21 7 chrX 7966584 7966871 -169007269 + AluJb SINE Alu 1 291 -21 182 323 32 0 chrX 7967785 7967847 -169006293 + L2 LINE L2 339 402 -2912 1158 190 9 0 chrX 7967851 7968067 -169006073 - MER58A DNA MER1_type 0 224 7 367 353 25 34 chrX 7968962 7969200 -169004940 + L2 LINE L2 2819 3054 -218 200 271 0 0 chrX 7969251 7969299 -169004841 - L2 LINE L2 -15 3298 3251 2877 206 64 18 chrX 7969916 7970539 -169003601 + MER82 DNA MER2_type 1 652 -1 2360 95 0 0 chrX 7972072 7972368 -169001772 + AluSx SINE Alu 1 296 -16 470 198 78 54 chrX 7972379 7972538 -169001602 + MLT1H LTR MaLR 382 589 -6 227 313 83 28 chrX 7973235 7973379 -169000761 + L2 LINE L2 2934 3085 -187 2011 152 16 7 chrX 7973409 7973718 -169000422 - AluJb SINE Alu 0 312 1 828 210 54 114 chrX 7973812 7973991 -169000149 - MLT1G LTR MaLR -190 400 212 2626 67 3 0 chrX 7973991 7974303 -168999837 - AluSp SINE Alu 0 313 1 828 210 54 114 chrX 7974303 7974577 -168999563 - MLT1G LTR MaLR -378 212 11 246 247 86 11 chrX 7974605 7974698 -168999442 - L1ME4a LINE L1 -45 6076 5977 1001 266 24 20 chrX 7974805 7975053 -168999087 + MIR SINE MIR 9 257 -5 213 60 20 40 chrX 7975918 7975968 -168998172 + (TTTTTG)n Simple_repeat Simple_repeat 2 50 0 3333 146 26 36 chrX 7976476 7977080 -168997060 - L1MB7 LINE L1 -11 6173 5576 1396 246 66 22 chrX 7977099 7977436 -168996704 - L1ME3A LINE L1 -5 6165 5801 1656 203 15 12 chrX 7977436 7977776 -168996364 - MER58B DNA MER1_type 0 341 1 1396 246 66 22 chrX 7977776 7977890 -168996250 - L1ME3A LINE L1 -369 5801 5694 934 228 13 35 chrX 7978282 7978510 -168995630 - MER58A DNA MER1_type -1 223 1 239 237 0 34 chrX 7978524 7978583 -168995557 - L2 LINE L2 -18 3295 3239 876 118 0 0 chrX 7978811 7978947 -168995193 + (GA)n Simple_repeat Simple_repeat 2 137 0 259 233 58 35 chrX 7979774 7979860 -168994280 + L1ME3A LINE L1 5864 5951 -219 205 307 67 0 chrX 7980197 7980272 -168993868 + MIR SINE MIR 106 185 -77 764 223 31 0 chrX 7980701 7980894 -168993246 + MER20 DNA MER1_type 14 212 -7 246 207 35 0 chrX 7981067 7981125 -168993015 - MER5A DNA MER1_type -80 109 50 582 256 18 0 chrX 7981317 7981481 -168992659 + MER5B DNA MER1_type 5 171 -7 215 178 44 0 chrX 7981533 7981578 -168992562 - MER5A DNA MER1_type -80 109 63 225 65 0 0 chrX 7982140 7982171 -168991969 + (CA)n Simple_repeat Simple_repeat 1 31 0 268 177 65 16 chrX 7982548 7982610 -168991530 - MER68 LTR ERV1 -128 434 370 * 603 247 130 53 chrX 7982595 7982653 -168991487 + LTR16C LTR ERVL 226 278 -213 3499 168 7 2 chrX 7982653 7983212 -168990928 + MER68 LTR ERV1 1 562 0 603 247 130 53 chrX 7983212 7983400 -168990740 + LTR16C LTR ERVL 278 491 0 255 243 37 37 chrX 7983496 7983603 -168990537 + L1ME3A LINE L1 5069 5175 -971 2253 89 0 20 chrX 7983616 7983919 -168990221 + AluSx SINE Alu 1 297 -15 877 235 11 0 chrX 7984078 7984265 -168989875 - MER5A DNA MER1_type 0 189 1 28 29 0 0 chrX 7984343 7984378 -168989762 + AT_rich Low_complexity Low_complexity 1 35 0 215 351 78 0 chrX 7984415 7984492 -168989648 + L2 LINE L2 3121 3203 -69 2449 90 7 0 chrX 7984716 7985026 -168989114 + AluSx SINE Alu 1 312 0 25 65 0 0 chrX 7985160 7985206 -168988934 + AT_rich Low_complexity Low_complexity 1 46 0 326 250 75 19 chrX 7985657 7985817 -168988323 + L1MDa LINE L1 1609 1777 -4763 1057 217 96 35 chrX 7985826 7986171 -168987969 + L1ME3A LINE L1 5802 6167 -3 692 201 126 0 chrX 7986922 7987096 -168987044 - MLT1F LTR MaLR -4 538 343 1058 206 50 21 chrX 7987128 7987366 -168986774 - MLT1F LTR MaLR -291 251 7 236 137 260 0 chrX 7988155 7988228 -168985912 - MIR SINE MIR -124 138 47 566 178 0 0 chrX 7988406 7988507 -168985633 - MLT1B LTR MaLR -7 383 283 586 234 0 0 chrX 7988518 7988646 -168985494 - MLT1B LTR MaLR -262 128 1 269 219 0 0 chrX 7989556 7989620 -168984520 - L2 LINE L2 -328 2985 2922 264 314 29 0 chrX 7989776 7989878 -168984262 - L2 LINE L2 -336 2977 2873 591 282 64 15 chrX 7990169 7990650 -168983490 + L2 LINE L2 2553 3061 -252 1156 178 5 0 chrX 7990826 7991034 -168983106 + MER20 DNA MER1_type 11 219 0 2253 103 7 0 chrX 7991086 7991387 -168982753 + AluSx SINE Alu 1 303 -9 192 329 129 0 chrX 7991683 7991768 -168982372 - MER5A DNA MER1_type -33 156 61 325 313 121 6 chrX 7991785 7991951 -168982189 - L1MC4 LINE L1 0 8042 7858 1232 192 12 8 chrX 7991952 7992202 -168981938 + Charlie1b DNA MER1_type 5 255 -268 1120 246 112 35 chrX 7992306 7992471 -168981669 - MLT1F1 LTR MaLR 0 567 416 2361 95 0 3 chrX 7992471 7992775 -168981365 + AluSx SINE Alu 1 303 -9 1120 246 112 35 chrX 7992775 7993073 -168981067 - MLT1F1 LTR MaLR -151 416 68 283 256 39 62 chrX 7993256 7993385 -168980755 - L1MC4 LINE L1 -373 7669 7544 285 51 0 0 chrX 7993617 7993656 -168980484 + (GA)n Simple_repeat Simple_repeat 1 39 0 281 250 100 10 chrX 7994157 7994257 -168979883 - MIR SINE MIR -71 191 83 327 319 48 66 chrX 7994535 7994593 -168979547 - MIR3 SINE MIR -1 207 149 1366 126 14 31 chrX 7994593 7994816 -168979324 + MER20 DNA MER1_type 1 219 0 327 319 48 66 chrX 7994816 7994923 -168979217 - MIR3 SINE MIR -59 149 45 445 296 65 46 chrX 7998603 7999019 -168975121 + L1ME4a LINE L1 5697 6120 -1 282 359 34 0 chrX 7999225 7999342 -168974798 - L3b LINE CR1 -209 1374 1254 1062 113 0 0 chrX 7999362 7999503 -168974637 - FRAM SINE Alu -16 160 20 860 151 65 121 chrX 7999606 7999838 -168974302 + MER20 DNA MER1_type 1 219 0 261 136 45 0 chrX 8000251 8000317 -168973823 + (TA)n Simple_repeat Simple_repeat 1 69 0 1735 109 29 0 chrX 8000317 8000556 -168973584 - AluSx SINE Alu -21 291 46 267 279 95 68 chrX 8001055 8001202 -168972938 + MIR SINE MIR 74 224 -38 431 138 9 207 chrX 8001481 8001603 -168972537 + MER96B DNA MER1_type? 244 306 -111 2514 99 0 0 chrX 8001603 8001916 -168972224 - AluSq SINE Alu 0 313 1 431 138 9 207 chrX 8001916 8002010 -168972130 + MER96B DNA MER1_type? 306 417 0 225 0 0 0 chrX 8002123 8002148 -168971992 + (TGAA)n Simple_repeat Simple_repeat 3 27 0 319 296 86 49 chrX 8002634 8002796 -168971344 + MER63B DNA MER1_type 1 168 -268 876 183 47 0 chrX 8002950 8003141 -168970999 - MER3 DNA MER1_type -1 208 9 2392 183 40 36 chrX 8003505 8004003 -168970137 + MLT1D LTR MaLR 4 503 -2 254 271 54 124 chrX 8004015 8004223 -168969917 - L2 LINE L2 0 3272 3102 1717 173 78 30 chrX 8004223 8004594 -168969546 + MLT1B LTR MaLR 2 390 0 254 271 54 124 chrX 8004594 8004773 -168969367 - L2 LINE L2 -170 3102 2912 2149 129 7 3 chrX 8004834 8005144 -168968996 - AluSq SINE Alu 0 313 3 2447 166 37 68 chrX 8005170 8005412 -168968728 + MER21B LTR ERV1 66 314 -549 2072 55 0 0 chrX 8005412 8005669 -168968471 + L1PA5 LINE L1 5895 6151 -3 2447 166 37 68 chrX 8005669 8005987 -168968153 + MER21B LTR ERV1 314 609 -254 2354 91 3 0 chrX 8005990 8006287 -168967853 - AluSg SINE Alu -12 298 1 2011 139 3 10 chrX 8006289 8006584 -168967556 - AluJo SINE Alu -19 293 1 534 295 91 9 chrX 8006712 8007054 -168967086 + L1MC4a LINE L1 4399 4768 -1378 806 258 83 61 chrX 8007069 8007306 -168966834 + L1MC4a LINE L1 5419 5649 -2159 762 143 15 15 chrX 8007306 8007439 -168966701 + FLAM_C SINE Alu 1 133 0 806 258 83 61 chrX 8007439 8007492 -168966648 + L1MC4a LINE L1 5649 5699 -2109 2413 82 0 0 chrX 8007492 8007784 -168966356 - AluSg SINE Alu -18 292 1 806 258 83 61 chrX 8007784 8007853 -168966287 + L1MC4a LINE L1 5699 5787 -2021 239 136 25 86 chrX 8007901 8007982 -168966158 + MLT1C-int LTR MaLR 1295 1370 -1 976 240 103 25 chrX 8008004 8008407 -168965733 + MLT1C LTR MaLR 21 390 -6 707 221 0 0 chrX 8008431 8008562 -168965578 - FLAM_A SINE Alu -2 131 1 336 215 75 0 chrX 8008564 8008671 -168965469 + L1MC4a LINE L1 5860 5974 -1834 228 324 0 0 chrX 8008674 8008748 -168965392 + (TA)n Simple_repeat Simple_repeat 2 75 0 2237 108 0 0 chrX 8008853 8009139 -168965001 + AluSx SINE Alu 5 290 -22 3390 169 77 6 chrX 8009145 8009847 -168964293 + L1MB8 LINE L1 5427 6178 0 485 252 170 8 chrX 8009826 8010191 -168963949 + L1MC5 LINE L1 7489 7912 -49 * 1292 200 0 0 chrX 8011022 8011252 -168962888 + AluJo SINE Alu 76 305 -7 352 261 0 0 chrX 8013499 8013568 -168960572 + L2 LINE L2 3245 3313 0 1677 164 88 6 chrX 8013630 8013972 -168960168 + L1MB5 LINE L1 5799 6168 -6 324 214 19 48 chrX 8013978 8014081 -168960059 + L1ME3A LINE L1 5887 5986 -184 1687 173 33 0 chrX 8014221 8014493 -168959647 + AluJb SINE Alu 1 281 -31 304 280 98 76 chrX 8014503 8014728 -168959412 + L1ME4a LINE L1 5673 5902 -219 1990 149 10 0 chrX 8014825 8015120 -168959020 + AluSx SINE Alu 1 298 -14 243 0 0 0 chrX 8015379 8015406 -168958734 + (T)n Simple_repeat Simple_repeat 1 27 0 316 309 10 0 chrX 8016248 8016345 -168957795 + L1ME4a LINE L1 5493 5590 -531 349 267 166 32 chrX 8016385 8016572 -168957568 + L1ME4a LINE L1 5685 5896 -225 897 225 14 28 chrX 8016969 8017187 -168956953 + MER20 DNA MER1_type 4 218 -1 2308 108 0 0 chrX 8017207 8017504 -168956636 - AluSx SINE Alu -15 297 1 234 0 0 0 chrX 8017617 8017643 -168956497 + (CA)n Simple_repeat Simple_repeat 2 27 0 531 0 0 0 chrX 8017643 8017702 -168956438 + (TA)n Simple_repeat Simple_repeat 2 60 0 236 29 0 29 chrX 8018314 8018348 -168955792 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 461 264 40 40 chrX 8019494 8019668 -168954472 + MER5B DNA MER1_type 5 178 0 1058 263 79 71 chrX 8020389 8020780 -168953360 + L2 LINE L2 2288 2685 -629 1977 199 37 2 chrX 8020780 8021212 -168952928 + L1MB5 LINE L1 5720 6166 -8 1058 263 79 71 chrX 8021212 8021329 -168952811 + L2 LINE L2 2685 2800 -514 1020 154 82 82 chrX 8021475 8021651 -168952489 - L1MB2 LINE L1 -1 6170 5992 4888 133 20 19 chrX 8021651 8021870 -168952270 + LTR39 LTR ERV1 1 218 -565 2247 115 0 13 chrX 8021870 8022184 -168951956 + AluSx SINE Alu 1 310 -2 4888 133 20 19 chrX 8022184 8022746 -168951394 + LTR39 LTR ERV1 218 783 0 1020 154 82 82 chrX 8022746 8022849 -168951291 - L1MB2 LINE L1 -178 5993 5891 802 11 0 0 chrX 8022909 8022998 -168951142 + AluY SINE Alu 178 266 -45 264 158 13 145 chrX 8023003 8023079 -168951061 - MER21B LTR ERV1 -789 74 9 1916 125 23 38 chrX 8023079 8023424 -168950716 - L1MB2 LINE L1 -282 5889 5550 367 278 32 8 chrX 8023682 8023808 -168950332 + L1MC4 LINE L1 7913 8041 -1 582 260 108 28 chrX 8025376 8025626 -168948514 + L1MB8 LINE L1 5909 6178 0 1513 140 156 0 chrX 8026851 8027101 -168947039 + AluJo SINE Alu 1 289 -13 315 71 0 0 chrX 8027122 8027164 -168946976 + (TG)n Simple_repeat Simple_repeat 1 42 0 2116 107 0 14 chrX 8027164 8027445 -168946695 - AluSx SINE Alu -33 279 3 628 277 33 5 chrX 8027858 8028042 -168946098 - MER53 DNA DNA 0 189 1 302 247 14 0 chrX 8028226 8028299 -168945841 + GA-rich Low_complexity Low_complexity 1 74 0 2361 106 0 0 chrX 8030695 8031006 -168943134 - AluSx SINE Alu -1 311 1 1073 107 0 0 chrX 8031047 8031178 -168942962 + AluSq/x SINE Alu 1 131 -181 1857 178 10 0 chrX 8031185 8031494 -168942646 + AluJo SINE Alu 1 312 0 320 328 121 23 chrX 8035774 8035948 -168938192 - MIR3 SINE MIR -13 195 5 719 151 227 54 chrX 8036008 8036193 -168937947 - MER20 DNA MER1_type -1 218 2 279 328 51 26 chrX 8037717 8037912 -168936228 + MIR SINE MIR 13 212 -50 918 182 4 2 chrX 8038585 8038808 -168935332 + (TGGG)n Simple_repeat Simple_repeat 2 223 -240 204 204 37 0 chrX 8038808 8038862 -168935278 + (TGGA)n Simple_repeat Simple_repeat 1 56 0 918 182 4 2 chrX 8038862 8038874 -168935266 + (TGGG)n Simple_repeat Simple_repeat 223 463 0 262 258 11 67 chrX 8039135 8039224 -168934916 + L2 LINE L2 3230 3313 0 417 192 8 84 chrX 8039365 8039520 -168934620 + MIR SINE MIR 2 145 -67 322 278 0 14 chrX 8039841 8039913 -168934227 + Charlie1 DNA MER1_type 1 71 -2690 * 1008 261 52 6 chrX 8039911 8040148 -168933992 + Charlie1 DNA MER1_type 2343 2601 -160 2058 160 0 0 chrX 8040148 8040455 -168933685 - AluJb SINE Alu -5 307 1 1008 261 52 6 chrX 8040455 8040547 -168933593 + Charlie1 DNA MER1_type 2601 2687 -74 462 163 23 0 chrX 8040615 8040701 -168933439 + Charlie1 DNA MER1_type 2674 2761 0 2636 20 0 23 chrX 8040818 8041117 -168933023 + AluY SINE Alu 1 292 -19 274 339 56 17 chrX 8046110 8046290 -168927850 - MER117 DNA MER1_type -7 190 4 2298 90 0 75 chrX 8049703 8050037 -168924103 + AluSx SINE Alu 1 309 -3 2874 129 33 87 chrX 8050237 8050779 -168923361 + MLT2B2 LTR ERVL 3 515 0 369 259 45 9 chrX 8052069 8052181 -168921959 + L1MC4 LINE L1 6612 6727 -1315 312 287 264 39 chrX 8053261 8053571 -168920569 - L2 LINE L2 0 3313 2934 1936 192 123 9 chrX 8053575 8054022 -168920118 - MLT1D LTR MaLR 0 505 8 291 260 122 8 chrX 8054095 8054218 -168919922 - L2 LINE L2 -387 2927 2791 402 246 27 0 chrX 8054265 8054375 -168919765 - MER20 DNA MER1_type -3 216 104 2604 56 0 0 chrX 8056785 8057088 -168917052 + AluY SINE Alu 1 303 -8 1634 139 82 36 chrX 8057587 8057867 -168916273 - AluJo SINE Alu -19 293 1 183 221 110 110 chrX 8057960 8058096 -168916044 - L3b LINE CR1 -265 1318 1183 1723 222 156 29 chrX 8058301 8058827 -168915313 + MLT1E LTR MaLR 1 593 0 577 240 39 77 chrX 8059981 8060214 -168913926 + MER58A DNA MER1_type 1 224 0 1940 149 6 32 chrX 8061249 8061565 -168912575 - AluJo SINE Alu -4 308 1 539 220 10 0 chrX 8062174 8062274 -168911866 - MER5A DNA MER1_type -34 155 55 304 306 16 8 chrX 8062748 8062869 -168911271 + L1MC4a LINE L1 5780 5901 -1907 981 164 99 5 chrX 8063062 8063275 -168910865 + MLT1C LTR MaLR 1 233 -234 1926 151 14 0 chrX 8063283 8063567 -168910573 + AluJb SINE Alu 12 299 -13 763 93 14 72 chrX 8063567 8063706 -168910434 - MER2 DNA MER2_type -213 132 2 198 167 0 0 chrX 8063732 8063768 -168910372 + (TG)n Simple_repeat Simple_repeat 2 37 0 228 163 0 0 chrX 8064577 8064620 -168909520 + CT-rich Low_complexity Low_complexity 2 44 0 569 255 39 39 chrX 8064978 8065182 -168908958 + MIR SINE MIR 31 234 -28 270 290 42 3 chrX 8066536 8066635 -168907505 - MIR SINE MIR -58 150 43 725 280 109 18 chrX 8067893 8068232 -168905908 - L2 LINE L2 -31 3282 2913 2243 95 0 7 chrX 8068642 8068948 -168905192 + AluSx SINE Alu 1 304 -8 1127 250 5 24 chrX 8069264 8069448 -168904692 + L1ME LINE L1 5409 5592 -578 1268 155 8 76 chrX 8069448 8069699 -168904441 + MER46A DNA MER2_type 2 235 -1 1127 250 5 24 chrX 8069699 8069806 -168904334 + L1ME LINE L1 5592 5699 -471 888 200 49 42 chrX 8069891 8070176 -168903964 + L1MC5 LINE L1 7249 7535 -426 491 248 103 25 chrX 8070249 8070491 -168903649 + L1MC5 LINE L1 7664 7924 -37 2172 104 13 7 chrX 8072025 8072332 -168901808 + AluSx SINE Alu 1 309 -3 2133 106 3 0 chrX 8072715 8073016 -168901124 + AluSq SINE Alu 1 302 -11 1533 199 87 9 chrX 8073336 8073683 -168900457 + MLT1A2 LTR MaLR 1 374 0 340 191 44 15 chrX 8073947 8074015 -168900125 + MER3 DNA MER1_type 7 76 -133 624 216 9 0 chrX 8074016 8074132 -168900008 + MER20 DNA MER1_type 1 117 -102 1030 117 0 6 chrX 8074148 8074311 -168899829 - AluSg/x SINE Alu -1 311 150 1579 79 0 0 chrX 8074311 8074513 -168899627 - AluSx SINE Alu -110 202 1 458 214 45 0 chrX 8074609 8074721 -168899419 + MER3 DNA MER1_type 70 139 -70 338 291 64 35 chrX 8075389 8075561 -168898579 + MER5A DNA MER1_type 13 189 0 227 263 71 0 chrX 8076376 8076475 -168897665 + L1ME4a LINE L1 5973 6078 -43 2278 80 0 3 chrX 8077928 8078227 -168895913 + AluSc SINE Alu 1 298 -11 299 221 90 62 chrX 8078447 8078592 -168895548 + MLT1L LTR MaLR 465 613 -2 27 29 0 0 chrX 8078758 8078792 -168895348 + AT_rich Low_complexity Low_complexity 1 34 0 2027 119 3 3 chrX 8078893 8079188 -168894952 - AluSx SINE Alu -17 295 1 1961 157 0 0 chrX 8080460 8080772 -168893368 + AluJb SINE Alu 1 312 0 484 224 191 0 chrX 8081055 8081202 -168892938 + MER5B DNA MER1_type 1 175 -3 966 215 47 19 chrX 8081213 8081427 -168892713 - MER58A DNA MER1_type 0 224 5 215 267 33 0 chrX 8081432 8081492 -168892648 - L3 LINE CR1 -45 1532 1471 2060 87 11 0 chrX 8082119 8082438 -168891702 + AluSc SINE Alu 1 322 0 306 359 10 0 chrX 8082741 8082844 -168891296 + MIR SINE MIR 48 151 -111 847 157 0 15 chrX 8083973 8084107 -168890033 - FLAM_C SINE Alu -1 132 1 294 253 13 0 chrX 8084278 8084357 -168889783 + MER116 DNA Mariner 1 80 0 1615 183 88 21 chrX 8084475 8084489 -168889651 + L1M4 LINE L1 2711 2723 -3423 2153 89 0 26 chrX 8084489 8084793 -168889347 + AluSx SINE Alu 1 296 -16 1615 183 88 21 chrX 8084793 8085210 -168888930 + L1M4 LINE L1 2723 3171 -2975 430 225 0 50 chrX 8085250 8085370 -168888770 - MLT1J2 LTR MaLR -336 114 1 1648 219 83 23 chrX 8087140 8087574 -168886566 + MLT1D LTR MaLR 1 460 -45 1890 161 15 6 chrX 8088496 8088832 -168885308 - L1MB7 LINE L1 -19 6165 5827 2182 141 78 15 chrX 8088832 8089228 -168884912 + Tigger2a DNA MER2_type 2 422 -12 1528 150 7 29 chrX 8089228 8089501 -168884639 - L1MB7 LINE L1 -357 5827 5561 238 212 15 0 chrX 8089509 8089575 -168884565 + L1ME4a LINE L1 5711 5777 -344 329 305 65 0 chrX 8089837 8089991 -168884149 + L1ME4a LINE L1 5860 6023 -98 1718 128 0 110 chrX 8090724 8091052 -168883088 + AluJb SINE Alu 5 296 -6 361 278 93 20 chrX 8091656 8091807 -168882333 - Tigger8 DNA MER2_type -270 396 235 2105 115 0 3 chrX 8092694 8092999 -168881141 - AluSx SINE Alu -8 304 1 805 69 0 0 chrX 8093352 8093453 -168880687 + HY3 scRNA scRNA 1 101 0 1615 164 34 10 chrX 8093760 8094058 -168880082 - AluJo SINE Alu -7 305 1 193 182 23 23 chrX 8094068 8094112 -168880028 + MIR SINE MIR 182 225 -37 270 0 0 0 chrX 8096091 8096121 -168878019 + (TG)n Simple_repeat Simple_repeat 2 31 0 960 220 28 5 chrX 8096193 8096407 -168877733 + MER20 DNA MER1_type 1 219 0 342 0 0 0 chrX 8097448 8097486 -168876654 + (TG)n Simple_repeat Simple_repeat 2 39 0 305 113 38 0 chrX 8097487 8097540 -168876600 - L1MB3 LINE L1 -16 6167 6113 1791 194 22 20 chrX 8097540 8097928 -168876212 - L1MB5 LINE L1 -9 6165 5762 445 299 128 6 chrX 8099793 8099957 -168874183 - L2 LINE L2 -3 3310 3127 1357 209 26 7 chrX 8100972 8101279 -168872861 - L1M4 LINE L1 -2449 3697 3385 875 259 49 0 chrX 8101286 8101491 -168872649 - MER58A DNA MER1_type -5 219 5 427 279 101 6 chrX 8101495 8101674 -168872466 - L1M4 LINE L1 -2756 3390 3195 507 303 155 4 chrX 8101684 8101935 -168872205 + MLT1J2 LTR MaLR 151 439 -11 227 259 17 0 chrX 8102980 8103038 -168871102 + MIR SINE MIR 72 130 -132 1083 202 80 10 chrX 8103502 8103804 -168870336 - MER33 DNA MER1_type 0 324 2 198 0 0 0 chrX 8104150 8104172 -168869968 + (CAGCC)n Simple_repeat Simple_repeat 4 25 0 468 266 70 6 chrX 8104982 8105153 -168868987 + L1ME1 LINE L1 5963 6161 -5 21 36 0 0 chrX 8105542 8105570 -168868570 + AT_rich Low_complexity Low_complexity 1 28 0 249 307 189 16 chrX 8105833 8105960 -168868180 - MIR SINE MIR -72 190 42 189 0 0 0 chrX 8106737 8106758 -168867382 + (CAA)n Simple_repeat Simple_repeat 2 22 0 2190 107 0 0 chrX 8107986 8108284 -168865856 + AluSq SINE Alu 1 298 -15 222 246 0 0 chrX 8109786 8109900 -168864240 + (TGGA)n Simple_repeat Simple_repeat 2 115 0 2414 188 86 57 chrX 8109901 8110729 -168863411 + MLT1B-int LTR MaLR 591 1735 0 580 220 112 25 chrX 8110729 8110915 -168863225 + MLT1B LTR MaLR 1 187 -187 614 217 35 25 chrX 8110954 8111157 -168862983 + MLT1B LTR MaLR 173 383 0 869 221 40 25 chrX 8111352 8111551 -168862589 + MER20 DNA MER1_type 1 202 -17 262 287 10 20 chrX 8111581 8111682 -168862458 + L1ME LINE L1 5679 5778 -343 1755 161 31 3 chrX 8111909 8112200 -168861940 + AluSx SINE Alu 3 301 -11 233 162 88 15 chrX 8112580 8112648 -168861492 + Charlie8 DNA MER1_type 82 154 -2263 645 123 85 0 chrX 8112649 8112755 -168861385 + FLAM_C SINE Alu 1 115 -18 396 241 60 9 chrX 8112783 8112899 -168861241 + Charlie8 DNA MER1_type 144 265 -2152 278 262 83 12 chrX 8113611 8113695 -168860445 - MER5B DNA MER1_type -87 91 2 2130 224 79 88 chrX 8113790 8114592 -168859548 + MER21B LTR ERV1 1 794 -69 206 118 0 0 chrX 8115176 8115210 -168858930 + (TAAAAA)n Simple_repeat Simple_repeat 3 36 0 2739 39 0 0 chrX 8116431 8116738 -168857402 + AluY SINE Alu 2 308 -3 2420 144 21 88 chrX 8116804 8117127 -168857013 + L1MB5 LINE L1 5264 5530 -644 2605 64 0 0 chrX 8117127 8117438 -168856702 + AluY SINE Alu 1 311 0 2420 144 21 88 chrX 8117438 8117719 -168856421 + L1MB5 LINE L1 5530 5828 -346 1126 156 0 6 chrX 8117719 8117886 -168856254 + AluJb SINE Alu 134 299 -13 485 172 35 35 chrX 8117888 8118004 -168856136 + L1MB5 LINE L1 5821 5936 -242 991 130 6 150 chrX 8118171 8118426 -168855714 + L1MB5 LINE L1 5937 6159 -15 1464 112 10 10 chrX 8118432 8118637 -168855503 - AluSg/x SINE Alu -12 298 94 234 275 100 0 chrX 8118718 8118798 -168855342 + MER5B DNA MER1_type 89 176 -2 2025 127 3 3 chrX 8118849 8119133 -168855007 + AluSx SINE Alu 1 284 -28 187 51 0 51 chrX 8119133 8119172 -168854968 + (TA)n Simple_repeat Simple_repeat 1 37 0 25 0 0 0 chrX 8121589 8121614 -168852526 + AT_rich Low_complexity Low_complexity 1 25 0 2407 83 0 0 chrX 8121669 8121957 -168852183 - AluSx SINE Alu -24 288 1 282 266 228 27 chrX 8122244 8122507 -168851633 + L2 LINE L2 2560 2875 -439 422 167 23 68 chrX 8122870 8123002 -168851138 - MER20 DNA MER1_type -92 127 2 1981 120 60 0 chrX 8123434 8123718 -168850422 - AluJo SINE Alu -11 301 1 1552 183 63 7 chrX 8123963 8124263 -168849877 - MER7A DNA MER2_type 0 346 32 2545 66 0 3 chrX 8124300 8124602 -168849538 + AluSg SINE Alu 1 301 -9 853 194 25 0 chrX 8124622 8124782 -168849358 + MER58A DNA MER1_type 3 166 0 348 157 16 15 chrX 8124806 8124891 -168849249 + MER58B DNA MER1_type 112 326 -15 2004 136 26 16 chrX 8125126 8125435 -168848705 - AluJb SINE Alu 0 312 1 482 327 83 5 chrX 8125529 8125734 -168848406 - MIR SINE MIR -19 243 23 1214 110 5 19 chrX 8125776 8125985 -168848155 - MER6 DNA MER2_type -1 864 659 2217 135 0 0 chrX 8126441 8126745 -168847395 + AluSx SINE Alu 3 306 -6 1075 223 57 16 chrX 8126753 8127067 -168847073 - L1MB7 LINE L1 -10 6174 5848 615 151 155 87 chrX 8127631 8127850 -168846290 + L1MD3 LINE L1 7761 7994 -1 323 287 145 54 chrX 8128113 8128541 -168845599 - MLT1L LTR MaLR -6 609 143 * 850 164 28 23 chrX 8128536 8128713 -168845427 - MER20 DNA MER1_type -10 209 32 308 167 0 0 chrX 8128975 8129023 -168845117 - L2 LINE L2 -5 3308 3261 25 31 0 0 chrX 8129053 8129085 -168845055 + AT_rich Low_complexity Low_complexity 1 32 0 325 156 16 16 chrX 8129126 8129190 -168844950 - L1MD1 LINE L1 -12 6230 6167 992 187 84 0 chrX 8129190 8129377 -168844763 + L1MB7 LINE L1 5924 6133 -51 2323 107 0 10 chrX 8129377 8129686 -168844454 - AluSx SINE Alu -2 310 5 992 187 84 0 chrX 8129686 8129712 -168844428 + L1MB7 LINE L1 6133 6155 -29 228 111 0 0 chrX 8130316 8130352 -168843788 + (CA)n Simple_repeat Simple_repeat 1 36 0 655 229 37 55 chrX 8130693 8130911 -168843229 + MER20 DNA MER1_type 6 219 0 731 127 0 17 chrX 8130929 8131047 -168843093 + FRAM SINE Alu 56 171 -5 228 284 80 23 chrX 8131558 8131646 -168842494 + MIR SINE MIR 162 254 -8 277 122 0 0 chrX 8131723 8131764 -168842376 - MLT1D LTR MaLR -1 504 464 2730 124 62 11 chrX 8131767 8132217 -168841923 - MLT1D LTR MaLR -19 486 14 216 330 70 10 chrX 8132673 8132773 -168841367 + L2 LINE L2 3195 3300 -13 195 42 0 0 chrX 8132773 8132797 -168841343 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 2113 100 7 41 chrX 8133350 8133668 -168840472 + AluSx SINE Alu 1 308 0 282 56 0 0 chrX 8134408 8134444 -168839696 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 2001 146 0 31 chrX 8135355 8135677 -168838463 - AluJb SINE Alu 0 312 1 2305 104 10 0 chrX 8135789 8136086 -168838054 - AluSx SINE Alu -12 300 1 26 64 0 0 chrX 8138773 8138820 -168835320 + GC_rich Low_complexity Low_complexity 1 47 0 21 0 0 0 chrX 8138841 8138862 -168835278 + GC_rich Low_complexity Low_complexity 1 21 0 30 83 0 0 chrX 8139023 8139095 -168835045 + GC_rich Low_complexity Low_complexity 1 72 0 241 216 29 20 chrX 8139141 8139243 -168834897 + (CCG)n Simple_repeat Simple_repeat 2 104 0 41 21 0 0 chrX 8139251 8139299 -168834841 + GC_rich Low_complexity Low_complexity 1 48 0 236 29 0 29 chrX 8139429 8139463 -168834677 + (CCG)n Simple_repeat Simple_repeat 2 34 0 310 278 14 47 chrX 8139644 8139873 -168834267 + C-rich Low_complexity Low_complexity 1 221 0 2418 58 20 3 chrX 8140824 8141118 -168833022 + AluSg SINE Alu 1 299 -11 1121 149 0 6 chrX 8141133 8141308 -168832832 + AluJb SINE Alu 137 310 -2 186 42 0 0 chrX 8142210 8142234 -168831906 - MIR SINE MIR -72 136 113 521 248 103 51 chrX 8142409 8142643 -168831497 + LTR16A1 LTR ERVL 212 457 0 212 284 37 46 chrX 8142658 8142767 -168831373 - MIR SINE MIR -42 220 113 336 24 0 0 chrX 8143102 8143143 -168830997 + (TC)n Simple_repeat Simple_repeat 2 42 0 336 48 0 0 chrX 8143144 8143186 -168830954 + (TG)n Simple_repeat Simple_repeat 1 42 0 957 180 37 32 chrX 8145012 8145229 -168828911 + MER20 DNA MER1_type 1 218 -1 1503 162 13 0 chrX 8145248 8145482 -168828658 - AluJb SINE Alu -14 298 62 189 333 19 56 chrX 8145503 8145611 -168828529 - MIR SINE MIR -111 151 48 261 0 0 0 chrX 8145681 8145710 -168828430 + (TC)n Simple_repeat Simple_repeat 1 29 0 198 0 0 0 chrX 8145709 8145731 -168828409 + (CA)n Simple_repeat Simple_repeat 1 22 0 * 258 32 0 0 chrX 8145731 8145762 -168828378 + (GA)n Simple_repeat Simple_repeat 1 31 0 1662 206 49 62 chrX 8145770 8146240 -168827900 - MLT2B1 LTR ERVL -56 464 1 1965 174 0 0 chrX 8146282 8146592 -168827548 - AluJb SINE Alu -2 310 1 293 190 17 0 chrX 8146612 8146670 -168827470 + MER5A DNA MER1_type 9 67 -122 702 225 11 78 chrX 8147101 8147292 -168826848 - MER45A DNA AcHobo 0 178 1 1900 210 28 24 chrX 8147521 8147978 -168826162 + MLT1C LTR MaLR 7 465 -2 420 269 17 23 chrX 8148258 8148433 -168825707 + L1MC5 LINE L1 7074 7247 -714 245 68 91 23 chrX 8148439 8148483 -168825657 + MLT1A1 LTR MaLR 319 365 0 2290 74 11 3 chrX 8148517 8148801 -168825339 - AluSq SINE Alu -15 298 13 1041 139 69 56 chrX 8148867 8149083 -168825057 + MER20 DNA MER1_type 1 219 0 183 100 0 0 chrX 8150798 8150828 -168823312 + (TG)n Simple_repeat Simple_repeat 1 30 0 491 226 51 113 chrX 8151043 8151100 -168823040 + MER5A DNA MER1_type 7 66 -123 2595 66 0 0 chrX 8151100 8151401 -168822739 + AluSc SINE Alu 1 301 -8 491 226 51 113 chrX 8151401 8151538 -168822602 + MER5A DNA MER1_type 66 189 0 1717 201 26 0 chrX 8151668 8151971 -168822169 - AluJo SINE Alu -1 311 1 186 133 0 0 chrX 8151979 8152009 -168822131 + (TG)n Simple_repeat Simple_repeat 1 30 0 2153 92 3 14 chrX 8152009 8152292 -168821848 - AluSg1 SINE Alu -25 284 5 192 97 0 0 chrX 8152301 8152332 -168821808 + (TTCC)n Simple_repeat Simple_repeat 4 34 0 2339 64 0 67 chrX 8152350 8152679 -168821461 - AluY SINE Alu -4 307 1 775 164 0 39 chrX 8152687 8152815 -168821325 - FLAM_A SINE Alu -10 123 1 677 223 67 36 chrX 8152964 8153157 -168820983 + L1ME LINE L1 5540 5738 -383 363 324 58 66 chrX 8153345 8153522 -168820618 + L1ME LINE L1 539 716 -5700 2306 86 0 0 chrX 8153522 8153813 -168820327 - AluSx SINE Alu -21 291 1 363 324 58 66 chrX 8153813 8154012 -168820128 + L1ME LINE L1 716 912 -5504 236 252 37 9 chrX 8154136 8154243 -168819897 + L1ME LINE L1 1407 1516 -4910 319 325 71 47 chrX 8154272 8154390 -168819750 + L1ME LINE L1 1735 1862 -4745 2301 115 0 10 chrX 8154390 8154702 -168819438 + AluSx SINE Alu 1 309 -3 319 325 71 47 chrX 8154702 8154795 -168819345 + L1ME LINE L1 1862 1951 -4656 442 316 94 38 chrX 8154809 8155075 -168819065 + L1ME LINE L1 4842 5122 -1304 2480 78 3 3 chrX 8155150 8155457 -168818683 + AluSc SINE Alu 1 307 -2 302 312 46 41 chrX 8155515 8155733 -168818407 + MLT1J2 LTR MaLR 3 221 -229 2295 118 0 0 chrX 8155910 8156216 -168817924 - AluSx SINE Alu -6 306 1 1854 158 0 0 chrX 8156365 8156678 -168817462 - AluJo SINE Alu 0 317 5 1482 194 10 0 chrX 8156728 8157032 -168817108 - L1MA9 LINE L1 -40 6272 5966 374 266 77 44 chrX 8157148 8157422 -168816718 - LTR40b LTR ERVL -1 461 179 258 252 47 28 chrX 8157758 8157865 -168816275 + LTR33 LTR ERVL 337 445 -76 1522 132 11 44 chrX 8157866 8158139 -168816001 + MER2 DNA MER2_type 2 265 -80 445 151 0 14 chrX 8158199 8158272 -168815868 + FLAM_A SINE Alu 42 113 -29 195 42 0 0 chrX 8158277 8158301 -168815839 + (CCA)n Simple_repeat Simple_repeat 3 26 0 281 257 0 0 chrX 8158335 8158405 -168815735 + MER2 DNA MER2_type 271 340 -5 244 271 0 14 chrX 8158409 8158479 -168815661 + LTR33 LTR ERVL 443 511 -10 390 281 72 29 chrX 8158485 8158624 -168815516 + L1ME LINE L1 5539 5683 -767 242 293 64 0 chrX 8158639 8158751 -168815389 + L1ME LINE L1 5757 5877 -747 253 285 86 7 chrX 8158876 8159027 -168815113 + L1ME LINE L1 6003 6165 -279 381 43 0 0 chrX 8159315 8159362 -168814778 + (TA)n Simple_repeat Simple_repeat 1 47 0 2243 86 0 4 chrX 8159370 8159650 -168814490 - AluSc SINE Alu -30 279 1 22 0 0 0 chrX 8159694 8159716 -168814424 + AT_rich Low_complexity Low_complexity 1 22 0 256 318 50 11 chrX 8159770 8159949 -168814191 + L1ME LINE L1 5713 5898 -223 2791 90 16 38 chrX 8159952 8160222 -168813918 + L1MA3 LINE L1 5870 6128 -177 2389 96 0 10 chrX 8160222 8160535 -168813605 + AluSg SINE Alu 1 310 0 2791 90 16 38 chrX 8160535 8160710 -168813430 + L1MA3 LINE L1 6128 6305 0 2622 43 0 7 chrX 8160765 8161064 -168813076 + AluY SINE Alu 1 297 -14 25 0 0 0 chrX 8161423 8161448 -168812692 + AT_rich Low_complexity Low_complexity 1 25 0 186 43 0 0 chrX 8162031 8162054 -168812086 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 706 162 148 0 chrX 8162084 8162226 -168811914 + Tigger1 DNA MER2_type 789 951 -1467 4186 134 83 11 chrX 8162625 8163372 -168810768 - Tigger1 DNA MER2_type -829 1589 789 2273 103 7 0 chrX 8163414 8163715 -168810425 - AluSx SINE Alu -9 303 1 24 0 0 0 chrX 8163721 8163745 -168810395 + AT_rich Low_complexity Low_complexity 1 24 0 333 191 143 12 chrX 8164135 8164219 -168809921 - L1ME4a LINE L1 -7 6114 6020 2411 96 3 3 chrX 8164456 8164769 -168809371 - AluSp SINE Alu 0 313 1 369 75 0 0 chrX 8164814 8164867 -168809273 + (CA)n Simple_repeat Simple_repeat 1 53 0 2969 136 9 25 chrX 8164867 8165058 -168809082 - Tigger1 DNA MER2_type -9 2409 2217 2069 122 7 10 chrX 8165058 8165354 -168808786 + AluJb SINE Alu 1 295 -17 2969 136 9 25 chrX 8165354 8165691 -168808449 - Tigger1 DNA MER2_type -201 2217 1889 986 100 7 0 chrX 8165828 8165968 -168808172 - Tigger1 DNA MER2_type -484 1934 1794 1282 153 127 19 chrX 8165968 8166236 -168807904 + AluJb SINE Alu 3 299 -13 1787 154 0 13 chrX 8166460 8166758 -168807382 - AluJo SINE Alu -18 294 1 239 273 0 15 chrX 8166907 8166973 -168807167 + (TCCA)n Simple_repeat Simple_repeat 4 68 0 398 306 93 41 chrX 8167157 8167621 -168806519 - L1M4 LINE L1 -1542 4604 4117 1332 97 0 0 chrX 8167622 8167798 -168806342 + AluSg/x SINE Alu 135 310 -2 180 0 0 0 chrX 8168151 8168171 -168805969 + (TA)n Simple_repeat Simple_repeat 1 20 0 1874 177 9 0 chrX 8168172 8168500 -168805640 - L1MB7 LINE L1 -12 6172 5842 3282 164 13 0 chrX 8169323 8169877 -168804263 - L1MC1 LINE L1 -159 6174 5614 416 319 38 23 chrX 8169668 8169931 -168804209 - L1PB3 LINE L1 -329 5825 5559 * 2217 106 0 3 chrX 8170074 8170386 -168803754 + AluSx SINE Alu 1 311 -1 267 342 141 16 chrX 8171490 8171674 -168802466 - L2 LINE L2 -637 2677 2471 525 111 46 19 chrX 8171775 8171883 -168802257 + L1MA5A LINE L1 6021 6131 -166 665 184 22 15 chrX 8171883 8172019 -168802121 + FRAM SINE Alu 32 168 -8 1106 119 0 0 chrX 8172051 8172219 -168801921 + L1MA5A LINE L1 6130 6297 0 2382 73 0 0 chrX 8172251 8172554 -168801586 - AluY SINE Alu -8 303 1 1558 170 7 0 chrX 8172581 8172858 -168801282 + AluJb SINE Alu 1 279 -33 2178 94 74 12 chrX 8172858 8173197 -168800943 - LTR4 LTR ERV1 0 596 237 1326 122 173 0 chrX 8173518 8173755 -168800385 + AluJb SINE Alu 21 298 -14 363 228 87 11 chrX 8174085 8174177 -168799963 + MER5A DNA MER1_type 2 100 -89 2617 142 9 34 chrX 8174199 8174636 -168799504 + MSTB LTR MaLR 1 426 0 322 130 0 0 chrX 8175181 8175227 -168798913 + Alu SINE Alu 1 46 -254 1950 107 50 7 chrX 8175285 8175584 -168798556 - AluSx SINE Alu 0 312 1 504 277 0 0 chrX 8176089 8176226 -168797914 + L1ME LINE L1 5603 5739 -427 323 293 13 51 chrX 8176311 8176468 -168797672 + L1MC4a LINE L1 4509 4659 -1487 2414 154 75 97 chrX 8176554 8177113 -168797027 + MLT2B3 LTR ERVL 1 547 -7 2091 115 7 0 chrX 8177244 8177539 -168796601 + AluSx SINE Alu 10 306 -6 461 304 91 70 chrX 8177542 8177652 -168796488 + L1MC4a LINE L1 4967 5073 -1073 2113 139 14 17 chrX 8177652 8177923 -168796217 + MER2 DNA MER2_type 1 272 -72 1955 144 0 3 chrX 8177923 8178215 -168795925 - AluSx SINE Alu -17 295 5 2113 139 14 17 chrX 8178215 8178288 -168795852 + MER2 DNA MER2_type 272 344 0 461 304 91 70 chrX 8178288 8178549 -168795591 + L1MC4a LINE L1 5073 5346 -800 395 311 26 32 chrX 8178549 8178720 -168795420 + MLT1F1 LTR MaLR 1 166 -376 1119 183 17 38 chrX 8178720 8178960 -168795180 + AluJo SINE Alu 1 235 -77 1084 237 94 51 chrX 8178998 8179369 -168794771 + MLT1F1 LTR MaLR 179 565 -2 1626 221 102 63 chrX 8179392 8179440 -168794700 + L1MC4a LINE L1 5371 5416 -2392 840 155 16 0 chrX 8179440 8179569 -168794571 + FLAM_C SINE Alu 1 131 -2 1626 221 102 63 chrX 8179569 8180167 -168793973 + L1MC4a LINE L1 5416 6042 -1766 1935 123 7 26 chrX 8180418 8180720 -168793420 + AluSx SINE Alu 1 296 -16 525 274 82 29 chrX 8180722 8180930 -168793210 + L1MC4 LINE L1 6699 6917 -1125 930 128 64 0 chrX 8180933 8181105 -168793035 + L1MB7 LINE L1 6001 6183 -1 918 89 0 0 chrX 8181501 8181624 -168792516 + AluY SINE Alu 173 295 -16 2405 93 0 0 chrX 8181685 8181996 -168792144 + AluSx SINE Alu 1 311 -1 362 238 80 23 chrX 8182363 8182546 -168791594 + L1MC4 LINE L1 6829 7074 -796 720 165 0 9 chrX 8182583 8182698 -168791442 + FLAM_C SINE Alu 2 115 -28 21 36 0 0 chrX 8182710 8182738 -168791402 + AT_rich Low_complexity Low_complexity 1 28 0 394 256 27 94 chrX 8182749 8182807 -168791333 + L1MC5 LINE L1 7645 7705 -256 1933 87 79 4 chrX 8182807 8183084 -168791056 + AluSc SINE Alu 1 298 -11 394 256 27 94 chrX 8183084 8183248 -168790892 + L1MC5 LINE L1 7705 7852 -109 1495 153 19 0 chrX 8183321 8183582 -168790558 + AluJb SINE Alu 44 309 -3 257 235 0 106 chrX 8183650 8183735 -168790405 + L1MC5 LINE L1 7034 7109 -852 677 110 80 0 chrX 8183737 8183837 -168790303 - FLAM_A SINE Alu -15 127 20 1220 170 4 42 chrX 8183906 8184147 -168789993 + AluJo SINE Alu 37 268 -44 857 180 0 6 chrX 8184178 8184356 -168789784 + GA-rich Low_complexity Low_complexity 4 180 0 693 213 4 12 chrX 8184379 8184643 -168789497 + GA-rich Low_complexity Low_complexity 1 261 0 305 223 31 52 chrX 8184643 8184754 -168789386 + L1MC4 LINE L1 7063 7251 -637 244 223 96 71 chrX 8184797 8184937 -168789203 + L1MD3 LINE L1 7260 7587 -408 1622 183 10 3 chrX 8184996 8185297 -168788843 + AluJb SINE Alu 1 303 -9 2084 125 0 0 chrX 8185587 8185884 -168788256 + AluSx SINE Alu 1 297 -15 331 210 12 25 chrX 8185955 8186036 -168788104 + L1MC5 LINE L1 7836 7915 -46 1698 162 0 23 chrX 8186086 8186395 -168787745 - AluJo SINE Alu -10 302 1 588 309 24 24 chrX 8187523 8187814 -168786326 + L1ME LINE L1 5508 5798 -323 1971 229 24 2 chrX 8187834 8188293 -168785847 - L1MB7 LINE L1 -258 5926 5458 407 274 190 34 chrX 8188478 8188741 -168785399 - L1ME3A LINE L1 -15 6155 5852 448 167 0 0 chrX 8188854 8188926 -168785214 + FLAM SINE Alu 53 124 -19 2007 120 0 0 chrX 8189310 8189601 -168784539 + AluSx SINE Alu 1 291 -21 351 291 51 48 chrX 8189605 8189921 -168784219 + L1ME4a LINE L1 5588 5904 -217 531 173 4 12 chrX 8189965 8190212 -168783928 + (TG)n Simple_repeat Simple_repeat 1 245 0 827 96 20 14 chrX 8190413 8190559 -168783581 + (GGAA)n Simple_repeat Simple_repeat 1 147 0 1589 146 18 21 chrX 8190748 8191029 -168783111 - AluJo SINE Alu -30 282 3 309 259 190 0 chrX 8191029 8191145 -168782995 + Charlie4 DNA MER1_type 1812 1949 -12 293 215 0 31 chrX 8191147 8191212 -168782928 + LTR49 LTR ERV1 30 92 -503 707 199 7 7 chrX 8191212 8191348 -168782792 + LTR47A LTR ERVL 1 136 -316 1911 93 21 21 chrX 8191355 8191645 -168782495 - AluSx SINE Alu -22 290 1 2110 153 8 6 chrX 8191646 8192006 -168782134 + L1MB2 LINE L1 5467 5827 -344 1805 124 41 21 chrX 8192011 8192301 -168781839 + AluJo SINE Alu 3 298 -14 2062 108 3 20 chrX 8192303 8192609 -168781531 + AluSx SINE Alu 2 302 -10 2815 153 35 28 chrX 8192609 8193177 -168780963 + L1MB3 LINE L1 5611 6182 -1 2147 91 7 10 chrX 8193671 8193968 -168780172 - AluSq SINE Alu -17 296 1 1647 168 7 14 chrX 8194096 8194387 -168779753 - AluJo SINE Alu -18 294 6 508 203 0 14 chrX 8194965 8195103 -168779037 + GA-rich Low_complexity Low_complexity 4 139 0 1972 191 34 29 chrX 8195108 8195554 -168778586 + MLT1D LTR MaLR 58 505 0 1806 56 9 4 chrX 8195576 8195809 -168778331 - AluSq SINE Alu -10 303 70 447 263 105 12 chrX 8195920 8196091 -168778049 + HAL1 LINE L1 25 211 -2296 1708 138 3 49 chrX 8196419 8196744 -168777396 - AluJo SINE Alu 0 312 3 372 276 75 68 chrX 8196746 8196942 -168777198 - L1MDa LINE L1 -4026 2514 2321 243 0 0 0 chrX 8196942 8196969 -168777171 + (TTTA)n Simple_repeat Simple_repeat 4 30 0 1663 149 4 7 chrX 8196969 8197250 -168776890 - AluJo SINE Alu -32 280 1 372 276 75 68 chrX 8197250 8197360 -168776780 - L1MDa LINE L1 -4218 2322 2205 2102 73 52 0 chrX 8197439 8197725 -168776415 + AluSq SINE Alu 1 301 -12 1665 152 65 37 chrX 8197765 8198120 -168776020 + MLT1A1 LTR MaLR 1 365 0 2257 93 0 13 chrX 8198383 8198731 -168775409 + AluSg SINE Alu 1 310 0 1589 157 50 7 chrX 8199241 8199522 -168774618 + AluJo SINE Alu 1 293 -19 240 35 0 0 chrX 8199523 8199552 -168774588 + (CA)n Simple_repeat Simple_repeat 2 30 0 2426 97 129 5 chrX 8200325 8200706 -168773434 + MSTA LTR MaLR 1 428 0 9639 166 25 1 chrX 8200724 8202323 -168771817 + MSTA-int LTR MaLR 15 1651 0 2135 134 153 5 chrX 8202323 8202696 -168771444 + MSTA LTR MaLR 1 428 0 321 298 14 91 chrX 8202898 8203106 -168771034 - L1MC5 LINE L1 -44 7917 7726 1158 256 73 25 chrX 8203153 8203551 -168770589 - L1ME2 LINE L1 -31 6133 5717 2263 112 0 0 chrX 8203645 8203957 -168770183 + AluSx SINE Alu 1 312 0 1524 151 7 11 chrX 8204027 8204299 -168769841 + AluJo SINE Alu 3 273 -39 404 260 181 15 chrX 8204517 8204721 -168769419 - MIR SINE MIR -15 247 10 487 255 34 13 chrX 8204777 8204926 -168769214 + MLT1H LTR MaLR 25 176 -373 993 217 5 0 chrX 8206513 8206711 -168767429 - L1ME2 LINE L1 -747 5399 5201 1866 136 0 13 chrX 8209356 8209683 -168764457 + AluSx SINE Alu 1 312 0 1948 92 96 0 chrX 8210586 8210867 -168763273 - AluSx SINE Alu -4 308 1 876 240 5 0 chrX 8211040 8211232 -168762908 - L1MB3 LINE L1 -7 6176 5984 687 188 0 0 chrX 8211247 8211364 -168762776 - FAM SINE Alu -11 174 58 1322 149 5 0 chrX 8211511 8211747 -168762393 - AluJb SINE Alu 0 312 76 3402 157 52 96 chrX 8211747 8212541 -168761599 + MER21A LTR ERV1 154 912 -19 2546 39 0 3 chrX 8212770 8213077 -168761063 - AluY SINE Alu -5 306 1 2008 103 25 0 chrX 8214689 8214970 -168759170 + AluSx SINE Alu 3 290 -22 773 168 0 0 chrX 8215007 8215138 -168759002 + AluJb SINE Alu 182 312 0 1912 164 0 13 chrX 8216192 8216497 -168757643 - AluJo SINE Alu -11 301 1 23 0 0 0 chrX 8216497 8216520 -168757620 + AT_rich Low_complexity Low_complexity 1 23 0 545 215 161 16 chrX 8216600 8216786 -168757354 - MER20 DNA MER1_type -6 213 1 2198 109 0 45 chrX 8218355 8218666 -168755474 + AluSx SINE Alu 1 297 -15 681 173 0 0 chrX 8219288 8219398 -168754742 + FLAM_C SINE Alu 2 111 -32 293 0 0 26 chrX 8219418 8219456 -168754684 + (TAA)n Simple_repeat Simple_repeat 3 39 0 1831 108 68 0 chrX 8219694 8219943 -168754197 + AluSx SINE Alu 1 266 -46 309 239 0 0 chrX 8220193 8220260 -168753880 + MLT1A1 LTR MaLR 299 365 0 326 282 0 0 chrX 8220471 8220556 -168753584 + MER3 DNA MER1_type 1 85 -124 579 218 36 62 chrX 8220655 8220880 -168753260 - MER20 DNA MER1_type 0 219 1 1701 164 7 20 chrX 8220986 8221278 -168752862 - AluJb SINE Alu -24 288 1 200 119 0 24 chrX 8222829 8222871 -168751269 + (CA)n Simple_repeat Simple_repeat 2 42 0 1650 166 22 4 chrX 8223129 8223400 -168750740 - AluJo SINE Alu -36 276 1 874 93 0 0 chrX 8223400 8223507 -168750633 - AluSq/x SINE Alu -178 135 29 2384 91 0 0 chrX 8223724 8224034 -168750106 + AluSx SINE Alu 1 310 0 2019 136 33 0 chrX 8224230 8224532 -168749608 - AluJb SINE Alu 0 312 1 2645 74 8 0 chrX 8224674 8225025 -168749115 - THE1A LTR MaLR -1 354 1 424 301 23 11 chrX 8225753 8225929 -168748211 + (TG)n Simple_repeat Simple_repeat 2 179 0 291 217 40 0 chrX 8225983 8226135 -168748005 + (TG)n Simple_repeat Simple_repeat 1 158 0 256 293 30 0 chrX 8226146 8226245 -168747895 + (TG)n Simple_repeat Simple_repeat 1 102 0 2030 128 3 29 chrX 8227380 8227692 -168746448 - AluJb SINE Alu 0 312 9 3020 169 11 4 chrX 8227822 8228344 -168745796 - Tigger4(Zombi) DNA MER2_type 0 2731 2206 751 217 0 0 chrX 8228338 8228476 -168745664 - Tigger4(Zombi) DNA MER2_type -2593 138 1 * 1682 160 53 53 chrX 8229811 8230111 -168744029 + AluJo SINE Alu 1 300 -12 1852 169 7 0 chrX 8230113 8230409 -168743731 + AluJo SINE Alu 3 300 -12 358 261 0 0 chrX 8231787 8231875 -168742265 + MER58A DNA MER1_type 1 88 -19 228 243 108 0 chrX 8231875 8231949 -168742191 + L1MCc LINE L1 122 203 -6220 482 288 75 29 chrX 8232087 8232365 -168741775 + L1ME2 LINE L1 5741 6031 -133 1563 214 0 16 chrX 8232408 8232717 -168741423 + AluJo SINE Alu 1 304 -8 297 255 149 11 chrX 8232723 8232817 -168741323 + MLT1F1 LTR MaLR 24 130 -437 470 279 20 60 chrX 8232834 8233085 -168741055 + L1PA14 LINE L1 5683 5923 -238 * 2517 203 52 29 chrX 8232885 8233482 -168740658 + L1MA10 LINE L1 5722 6332 -2 1780 188 114 10 chrX 8233484 8233889 -168740251 + MLT1F1 LTR MaLR 121 567 0 2432 95 0 0 chrX 8235137 8235442 -168738698 + AluSc SINE Alu 1 305 -4 249 300 38 0 chrX 8235612 8235692 -168738448 + L2 LINE L2 3185 3267 -5 200 200 18 0 chrX 8235693 8235748 -168738392 + GA-rich Low_complexity Low_complexity 4 59 0 1145 192 64 91 chrX 8235820 8235988 -168738152 + MLT1A1 LTR MaLR 1 172 -193 1797 144 3 34 chrX 8235988 8236280 -168737860 + AluJo SINE Alu 12 294 -18 1145 192 64 91 chrX 8236280 8236486 -168737654 + MLT1A1 LTR MaLR 172 365 0 2273 94 0 14 chrX 8236944 8237264 -168736876 + AluSg SINE Alu 1 316 0 532 321 108 39 chrX 8237964 8238397 -168735743 + L1ME4a LINE L1 5289 5751 -370 362 274 191 15 chrX 8238446 8238650 -168735490 + L1ME4a LINE L1 5864 6103 -18 25 0 0 0 chrX 8239613 8239638 -168734502 + AT_rich Low_complexity Low_complexity 1 25 0 231 329 24 0 chrX 8239638 8239720 -168734420 - MIR3 SINE MIR -41 167 84 206 220 20 0 chrX 8240678 8240728 -168733412 + G-rich Low_complexity Low_complexity 3 53 0 477 0 0 0 chrX 8242515 8242568 -168731572 + (TG)n Simple_repeat Simple_repeat 2 54 0 405 0 0 0 chrX 8242614 8242659 -168731481 + (TG)n Simple_repeat Simple_repeat 2 46 0 1011 178 6 0 chrX 8242659 8242822 -168731318 - AluJo SINE Alu -27 285 122 184 362 101 11 chrX 8243426 8243614 -168730526 - MIR SINE MIR -38 224 20 916 102 0 16 chrX 8243783 8243911 -168730229 + FLAM_C SINE Alu 1 126 -17 2427 88 0 0 chrX 8243938 8244232 -168729908 - AluSx SINE Alu -18 294 1 801 136 0 0 chrX 8244233 8244343 -168729797 - AluJo/FLAM SINE Alu -202 110 1 2241 213 43 22 chrX 8244347 8244633 -168729507 - L1MC3 LINE L1 -16 7769 7491 1972 186 8 14 chrX 8244633 8244999 -168729141 + MLT1A1 LTR MaLR 2 365 0 2241 213 43 22 chrX 8244999 8245267 -168728873 - L1MC3 LINE L1 -294 7491 7203 234 219 25 101 chrX 8245273 8245392 -168728748 - MLT1F1 LTR MaLR -433 134 25 1507 168 76 52 chrX 8245395 8245764 -168728376 - L1MC3 LINE L1 -707 7078 6701 1834 130 52 0 chrX 8245775 8246092 -168728048 - AluJo SINE Alu 0 331 1 929 242 9 22 chrX 8246816 8247039 -168727101 - MER58A DNA MER1_type -4 220 1 418 289 35 0 chrX 8247807 8247921 -168726219 + MER58A DNA MER1_type 107 224 0 2395 72 30 7 chrX 8247949 8248254 -168725886 - AluSq SINE Alu -1 312 1 1217 174 54 8 chrX 8248322 8248581 -168725559 - L1MB7 LINE L1 -19 6165 5895 1484 158 60 34 chrX 8249617 8249882 -168724258 + AluJb SINE Alu 6 277 -35 868 170 0 0 chrX 8250394 8250529 -168723611 - AluJo SINE Alu -177 135 1 2061 148 3 6 chrX 8250922 8251233 -168722907 + AluJb SINE Alu 1 310 -2 320 389 56 5 chrX 8252124 8252322 -168721818 + L1 LINE L1 3622 3829 -2317 522 249 0 0 chrX 8252357 8252530 -168721610 + (TCCA)n Simple_repeat Simple_repeat 2 174 0 203 298 0 0 chrX 8252531 8252578 -168721562 + (CCCA)n Simple_repeat Simple_repeat 1 47 0 755 178 0 6 chrX 8252580 8252760 -168721380 + (TCCA)n Simple_repeat Simple_repeat 1 179 0 221 255 0 0 chrX 8252800 8252847 -168721293 + (TCCA)n Simple_repeat Simple_repeat 2 48 0 268 331 81 0 chrX 8252848 8252972 -168721168 - L2 LINE L2 -1 3271 3138 1940 177 21 23 chrX 8253409 8253793 -168720347 + MLT1B LTR MaLR 1 383 -7 1975 125 0 58 chrX 8255492 8255804 -168718336 - AluJb SINE Alu -17 295 2 859 233 159 4 chrX 8257066 8257324 -168716816 - AluJo SINE Alu 0 302 5 2404 86 7 7 chrX 8260793 8261097 -168713043 - AluSx SINE Alu -8 304 1 942 213 63 29 chrX 8261099 8261338 -168712802 + MER58B DNA MER1_type 74 320 -21 1661 154 0 84 chrX 8261338 8261671 -168712469 + AluJb SINE Alu 1 307 0 1915 153 29 13 chrX 8262482 8262789 -168711351 - AluJo SINE Alu 0 312 1 442 232 6 11 chrX 8262867 8263048 -168711092 + (CA)n Simple_repeat Simple_repeat 1 180 0 213 219 0 0 chrX 8263061 8263134 -168711006 + (CA)n Simple_repeat Simple_repeat 2 74 0 2320 124 0 0 chrX 8264375 8264682 -168709458 - AluSx SINE Alu -5 307 1 1805 176 0 0 chrX 8266023 8266313 -168707827 + AluJo SINE Alu 1 290 -22 623 235 19 25 chrX 8266729 8266891 -168707249 - MER3 DNA MER1_type -26 183 23 956 141 7 0 chrX 8267267 8267402 -168706738 - AluJo SINE Alu -176 136 1 2042 155 52 8 chrX 8267916 8268316 -168705824 + L1MB2 LINE L1 5748 6165 -6 1972 138 17 3 chrX 8268798 8269094 -168705046 - AluJo SINE Alu -12 300 1 25 0 0 0 chrX 8269683 8269708 -168704432 + AT_rich Low_complexity Low_complexity 1 25 0 945 135 0 0 chrX 8269713 8269839 -168704301 - FLAM_C SINE Alu -17 126 1 22 0 0 0 chrX 8270070 8270092 -168704048 + AT_rich Low_complexity Low_complexity 1 22 0 672 167 0 0 chrX 8270162 8270264 -168703876 + FRAM SINE Alu 62 163 -13 291 54 0 0 chrX 8270377 8270414 -168703726 + (A)n Simple_repeat Simple_repeat 1 37 0 318 259 95 43 chrX 8271182 8271298 -168702842 + MER5A DNA MER1_type 1 122 -67 2038 111 21 0 chrX 8275206 8275523 -168698617 + AluSx SINE Alu 1 323 0 1048 168 0 0 chrX 8275530 8275685 -168698455 + FAM SINE Alu 1 155 -30 204 200 0 0 chrX 8275687 8275732 -168698408 + CT-rich Low_complexity Low_complexity 4 48 0 21 36 0 0 chrX 8275738 8275766 -168698374 + AT_rich Low_complexity Low_complexity 1 28 0 868 163 88 0 chrX 8277812 8277959 -168696181 + FRAM SINE Alu 1 160 -6 333 211 40 47 chrX 8278202 8278342 -168695798 + L1MB8 LINE L1 5920 6061 -122 408 111 136 0 chrX 8278432 8278513 -168695627 + MER21A LTR ERV1 839 930 -1 198 271 153 76 chrX 8278686 8278830 -168695310 - L3 LINE CR1 -260 1317 1163 433 261 213 37 chrX 8278866 8279134 -168695006 + L1MB3 LINE L1 5330 5644 -2164 2055 146 0 31 chrX 8279656 8279978 -168694162 - AluJb SINE Alu 0 312 1 687 111 10 0 chrX 8280065 8280164 -168693976 + HY3 scRNA scRNA 1 100 -1 1862 187 63 0 chrX 8281477 8281873 -168692267 - L1MB7 LINE L1 -9 6175 5755 782 192 85 6 chrX 8281878 8282055 -168692085 - L1MB7 LINE L1 -524 5656 5466 2379 88 3 7 chrX 8282178 8282484 -168691656 - AluSg SINE Alu -5 305 1 482 236 192 33 chrX 8282574 8282756 -168691384 + MER58A DNA MER1_type 9 219 -5 1610 181 0 28 chrX 8284535 8284817 -168689323 - AluJb SINE Alu -24 288 15 2438 149 15 22 chrX 8285019 8285475 -168688665 + L1MB3 LINE L1 5728 6180 -3 2271 116 0 19 chrX 8285506 8285824 -168688316 + AluSx SINE Alu 1 312 0 1519 158 3 110 chrX 8285887 8286223 -168687917 + AluJb SINE Alu 1 300 -12 2302 117 0 0 chrX 8286223 8286560 -168687580 + AluSg SINE Alu 1 337 0 216 0 0 0 chrX 8288658 8288682 -168685458 + (A)n Simple_repeat Simple_repeat 1 24 0 2517 79 0 0 chrX 8288907 8289212 -168684928 + AluY SINE Alu 1 305 -6 1849 124 0 72 chrX 8289738 8289906 -168684234 - AluJo SINE Alu -14 298 120 242 0 61 0 chrX 8289906 8289939 -168684201 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2624 3 0 24 chrX 8289939 8290230 -168683910 - AluYa5 SINE Alu -27 284 1 1849 124 0 72 chrX 8290230 8290367 -168683773 - AluJo SINE Alu -190 122 14 744 182 23 8 chrX 8291007 8291139 -168683001 + FAM SINE Alu 32 165 -20 376 322 28 0 chrX 8291937 8292117 -168682023 + LTR41 LTR ERVL 3 187 -586 498 176 54 152 chrX 8292355 8292559 -168681581 + LTR41 LTR ERVL 503 686 -87 393 259 43 0 chrX 8292611 8292727 -168681413 - MER58B DNA MER1_type -1 340 220 236 204 0 0 chrX 8292781 8292825 -168681315 + LTR41 LTR ERVL 720 763 -10 1573 208 0 10 chrX 8293298 8293591 -168680549 + AluJo SINE Alu 2 291 -21 1592 213 74 12 chrX 8293598 8294002 -168680138 - L1MB2 LINE L1 -16 6155 5727 2339 107 0 0 chrX 8294043 8294334 -168679806 + AluSx SINE Alu 1 291 -21 278 271 25 42 chrX 8294373 8294491 -168679649 + L1ME LINE L1 5659 5774 -396 1145 174 19 19 chrX 8294509 8294722 -168679418 - MER20 DNA MER1_type -4 215 3 2217 100 0 4 chrX 8295555 8295835 -168678305 - AluSx SINE Alu -33 279 1 2377 89 0 10 chrX 8295945 8296247 -168677893 - AluSq SINE Alu -14 299 1 1979 132 0 35 chrX 8297082 8297400 -168676740 + AluJb SINE Alu 5 311 -1 22 0 0 0 chrX 8298718 8298740 -168675400 + AT_rich Low_complexity Low_complexity 1 22 0 225 0 0 0 chrX 8299195 8299220 -168674920 + (TCTA)n Simple_repeat Simple_repeat 2 26 0 1602 54 19 0 chrX 8299460 8299665 -168674475 - L1PA7 LINE L1 0 6154 5946 282 269 37 9 chrX 8300848 8300956 -168673184 + L1ME3A LINE L1 6046 6156 -14 1560 197 87 32 chrX 8300973 8301409 -168672731 + MLT1C LTR MaLR 1 460 -7 267 303 101 0 chrX 8301932 8302021 -168672119 + MIR3 SINE MIR 96 193 -15 287 203 16 0 chrX 8302138 8302202 -168671938 + L1MD1 LINE L1 6032 6096 -146 357 115 0 33 chrX 8302202 8302263 -168671877 + AluJ/FLAM SINE Alu 17 75 -227 684 188 106 69 chrX 8302934 8303017 -168671123 + L1MD1 LINE L1 6003 6081 -161 1819 135 3 53 chrX 8303017 8303320 -168670820 + AluJb SINE Alu 17 304 -8 684 188 106 69 chrX 8303320 8303454 -168670686 + L1MD1 LINE L1 6081 6228 -14 1754 186 0 0 chrX 8303458 8303748 -168670392 + AluJo SINE Alu 1 290 -22 1974 142 26 3 chrX 8303908 8304210 -168669930 - AluJb SINE Alu -3 309 1 237 319 75 43 chrX 8306063 8306157 -168667983 - MIR SINE MIR -90 118 22 2992 9 0 0 chrX 8306235 8306553 -168667587 - AluYb8 SINE Alu 0 318 1 1543 153 0 12 chrX 8308108 8308181 -168665959 + AluJo SINE Alu 63 135 -177 2314 104 0 3 chrX 8308181 8308489 -168665651 + AluY SINE Alu 1 307 -4 1543 153 0 12 chrX 8308489 8308664 -168665476 + AluJo SINE Alu 135 308 -4 885 237 17 58 chrX 8308672 8308967 -168665173 + L1ME3A LINE L1 5805 6087 -83 730 262 52 0 chrX 8309568 8309778 -168664362 + MER58A DNA MER1_type 2 222 -2 23 0 0 44 chrX 8309923 8309945 -168664195 + AT_rich Low_complexity Low_complexity 1 22 -21 2318 103 0 7 chrX 8309945 8310246 -168663894 - AluSq SINE Alu -14 299 1 1936 155 7 7 chrX 8310250 8310547 -168663593 - AluJb SINE Alu -15 297 1 23 0 0 44 chrX 8310547 8310564 -168663576 + AT_rich Low_complexity Low_complexity 25 43 0 1802 146 31 121 chrX 8310863 8311076 -168663064 + L1MC3 LINE L1 7310 7541 -454 1998 133 0 17 chrX 8311076 8311378 -168662762 + AluSx SINE Alu 1 297 -15 1802 146 31 121 chrX 8311378 8311679 -168662461 + L1MC3 LINE L1 7541 7995 0 257 204 0 0 chrX 8312420 8312464 -168661676 + AluJ/monomer SINE Alu 1 44 -259 25 0 0 0 chrX 8312469 8312494 -168661646 + AT_rich Low_complexity Low_complexity 1 25 0 1832 132 10 65 chrX 8312707 8313017 -168661123 - AluJo SINE Alu -19 293 1 2170 135 0 3 chrX 8313521 8313832 -168660308 + AluSq SINE Alu 1 310 -3 344 247 52 91 chrX 8313901 8314055 -168660085 - HAL1b LINE L1 -1 1347 1200 1706 153 62 7 chrX 8314208 8314496 -168659644 + AluJb SINE Alu 1 304 -8 568 301 25 20 chrX 8315038 8315295 -168658845 + L1ME1 LINE L1 5781 6001 -165 525 203 108 0 chrX 8315785 8315933 -168658207 - L1MB8 LINE L1 -115 6063 5900 2652 53 0 0 chrX 8316417 8316718 -168657422 + AluY SINE Alu 1 301 -10 1312 267 23 32 chrX 8317648 8318049 -168656091 + L1MB7 LINE L1 5747 6145 -39 800 181 0 0 chrX 8318049 8318182 -168655958 + AluJo SINE Alu 1 133 -169 1312 267 23 32 chrX 8318182 8318211 -168655929 + L1MB7 LINE L1 6145 6173 -11 246 154 31 15 chrX 8318227 8318292 -168655848 + GA-rich Low_complexity Low_complexity 1 66 0 182 341 35 0 chrX 8318489 8318574 -168655566 - MIR SINE MIR -116 146 59 807 145 105 23 chrX 8318877 8319049 -168655091 + AluJo SINE Alu 121 306 -6 304 303 81 10 chrX 8319977 8320076 -168654064 + AluJb SINE Alu 176 281 -21 201 39 0 0 chrX 8320124 8320150 -168653990 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 812 193 56 0 chrX 8320616 8320777 -168653363 - MER20 DNA MER1_type -48 171 2 362 269 59 25 chrX 8320963 8321082 -168653058 + MLT1K LTR MaLR 460 582 -6 414 0 0 0 chrX 8321127 8321173 -168652967 + (CA)n Simple_repeat Simple_repeat 1 46 0 640 194 148 46 chrX 8322773 8322794 -168651346 + MER20 DNA MER1_type 1 18 -201 1972 128 54 20 chrX 8322794 8323097 -168651043 + MLT1A1 LTR MaLR 1 319 -46 2507 74 3 0 chrX 8323097 8323396 -168650744 - AluSp SINE Alu -4 309 10 1972 128 54 20 chrX 8323396 8323445 -168650695 + MLT1A1 LTR MaLR 319 365 0 640 194 148 46 chrX 8323445 8323619 -168650521 + MER20 DNA MER1_type 18 216 -3 2423 62 0 10 chrX 8323900 8324191 -168649949 + AluSp SINE Alu 24 311 -2 307 221 0 0 chrX 8324465 8324533 -168649607 + L1MB3 LINE L1 5938 6005 -178 254 111 0 0 chrX 8324550 8324586 -168649554 + Alu SINE Alu 2 37 -266 530 213 16 8 chrX 8324593 8324715 -168649425 - MLT1A2 LTR MaLR -52 322 200 266 0 29 0 chrX 8324808 8324842 -168649298 + (TAAAAA)n Simple_repeat Simple_repeat 2 36 0 2318 123 0 0 chrX 8325465 8325775 -168648365 + AluSx SINE Alu 3 312 0 1517 171 59 39 chrX 8326023 8326328 -168647812 + AluJo SINE Alu 1 311 -1 1822 155 52 14 chrX 8326437 8326786 -168647354 + THE1C LTR MaLR 1 362 -13 379 260 0 0 chrX 8326801 8326897 -168647243 - MER5A DNA MER1_type -93 96 1 1157 146 6 6 chrX 8327398 8327576 -168646564 + AluJb SINE Alu 135 312 0 261 306 89 6 chrX 8327612 8327769 -168646371 - MER5B DNA MER1_type -8 170 1 1905 165 0 13 chrX 8327989 8328305 -168645835 - AluJb SINE Alu 0 312 1 2212 111 0 16 chrX 8330328 8330643 -168643497 - AluSq SINE Alu -3 310 1 2078 135 20 0 chrX 8330750 8331046 -168643094 + AluJb SINE Alu 9 310 -2 2065 124 7 10 chrX 8381772 8382078 -168592062 + AluSx SINE Alu 1 305 -7 1958 253 68 39 chrX 8382138 8383023 -168591117 + L1MEc LINE L1 1345 2262 -4134 1083 144 20 10 chrX 8383023 8383218 -168590922 + L1PA13 LINE L1 5967 6163 0 1958 253 68 39 chrX 8383218 8383323 -168590817 + L1MEc LINE L1 2262 2363 -4033 214 147 59 15 chrX 8383339 8383407 -168590733 + (TA)n Simple_repeat Simple_repeat 1 71 0 225 273 0 0 chrX 8383424 8383468 -168590672 - MER2 DNA MER2_type 0 345 302 1655 122 0 0 chrX 8383479 8383709 -168590431 + AluJb SINE Alu 1 230 -82 28 61 0 0 chrX 8383739 8383788 -168590352 + AT_rich Low_complexity Low_complexity 1 49 0 1253 144 25 0 chrX 8383788 8383989 -168590151 - MER2 DNA MER2_type -139 206 1 532 182 153 86 chrX 8384954 8385163 -168588977 - MER58A DNA MER1_type 0 224 2 2404 103 0 3 chrX 8385508 8385820 -168588320 + AluSx SINE Alu 2 312 0 1030 188 28 5 chrX 8385951 8386164 -168587976 + MER20 DNA MER1_type 1 218 -1 206 346 63 31 chrX 8386472 8386599 -168587541 - MIR SINE MIR -113 149 19 2036 71 0 23 chrX 8388432 8388698 -168585442 - AluSg SINE Alu -50 260 1 180 0 0 0 chrX 8389852 8389872 -168584268 + (TAAAA)n Simple_repeat Simple_repeat 4 23 0 2052 132 0 0 chrX 8390649 8390950 -168583190 - AluJb SINE Alu 0 301 1 650 290 65 0 chrX 8391011 8391225 -168582915 - MER58 DNA MER1_type -113 228 1 2346 173 121 22 chrX 8391291 8391556 -168582584 + L1MB3 LINE L1 5570 5807 -376 2180 124 0 7 chrX 8391556 8391679 -168582461 + AluSx SINE Alu 4 126 -186 271 44 44 0 chrX 8391679 8391724 -168582416 + (CAAA)n Simple_repeat Simple_repeat 4 50 0 2180 124 0 7 chrX 8391724 8391899 -168582241 + AluSx SINE Alu 126 300 -12 2346 173 121 22 chrX 8391899 8392189 -168581951 + L1MB3 LINE L1 5807 6180 -3 237 292 164 33 chrX 8393633 8393962 -168580178 + L2 LINE L2 2851 3222 -91 2426 71 7 10 chrX 8395653 8395961 -168578179 - AluSx SINE Alu -5 307 1 757 181 46 69 chrX 8396251 8396467 -168577673 + MER20 DNA MER1_type 1 211 -8 217 236 194 14 chrX 8398312 8398384 -168575756 + L2 LINE L2 3218 3302 -11 280 275 42 28 chrX 8399559 8399701 -168574439 + MIR SINE MIR 41 184 -78 1812 174 24 0 chrX 8399775 8400069 -168574071 - AluJo SINE Alu -11 301 1 954 201 113 25 chrX 8400291 8400340 -168573800 - Charlie5 DNA MER1_type -9 2615 2572 2536 77 0 0 chrX 8400340 8400651 -168573489 - AluSx SINE Alu -1 311 1 954 201 113 25 chrX 8400651 8400920 -168573220 - Charlie5 DNA MER1_type -52 2572 2269 25 0 0 0 chrX 8400942 8400967 -168573173 + AT_rich Low_complexity Low_complexity 1 25 0 797 108 0 0 chrX 8401512 8401623 -168572517 - L1MA1 LINE L1 -4 6298 6188 571 191 0 37 chrX 8401686 8401822 -168572318 + Charlie5 DNA MER1_type 2391 2521 -91 364 228 51 57 chrX 8401828 8401986 -168572154 + Charlie5 DNA MER1_type 2466 2622 0 276 232 0 14 chrX 8404481 8404550 -168569590 + L1M LINE L1 5354 5421 -700 198 0 0 0 chrX 8404921 8404943 -168569197 + (CA)n Simple_repeat Simple_repeat 2 23 0 342 0 0 0 chrX 8404980 8405018 -168569122 + (CA)n Simple_repeat Simple_repeat 2 39 0 1013 236 100 14 chrX 8405973 8406253 -168567887 + L1MD3 LINE L1 7323 7626 -369 1431 150 85 68 chrX 8406254 8406524 -168567616 + AluJo SINE Alu 1 278 -34 180 0 0 0 chrX 8406524 8406544 -168567596 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 1431 150 85 68 chrX 8406544 8406580 -168567560 + AluJo SINE Alu 278 312 0 195 343 20 20 chrX 8406958 8407060 -168567080 + MIR3 SINE MIR 104 205 -3 228 281 101 11 chrX 8407165 8407254 -168566886 + L2 LINE L2 3176 3272 0 1259 164 5 5 chrX 8407653 8407873 -168566267 - AluJo SINE Alu -7 305 86 948 181 80 38 chrX 8408202 8408440 -168565700 + MLT1F1 LTR MaLR 320 567 0 1423 213 113 19 chrX 8410254 8410677 -168563463 + MLT1C LTR MaLR 1 463 -4 180 111 0 0 chrX 8411987 8412014 -168562126 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 1997 118 34 10 chrX 8412290 8412586 -168561554 - AluSx SINE Alu -9 303 1 2059 161 19 33 chrX 8413852 8414219 -168559921 + MLT1A1 LTR MaLR 3 364 -1 1888 190 69 35 chrX 8414947 8415111 -168559029 + MLT1C LTR MaLR 1 158 -309 2308 82 0 0 chrX 8415111 8415445 -168558695 + AluSx SINE Alu 1 334 0 1888 190 69 35 chrX 8415445 8415729 -168558411 + MLT1C LTR MaLR 158 467 0 1013 192 189 80 chrX 8416076 8416425 -168557715 - MLT1B LTR MaLR -3 387 1 491 206 56 0 chrX 8417660 8417767 -168556373 + MER20 DNA MER1_type 1 113 -106 828 130 32 87 chrX 8417769 8417954 -168556186 - MER20 DNA MER1_type -41 178 4 2193 82 0 0 chrX 8420926 8421235 -168552905 - AluSq SINE Alu 0 309 1 1494 191 69 29 chrX 8421516 8421893 -168552247 + L1MB4 LINE L1 5789 6180 0 21 36 0 0 chrX 8422871 8422899 -168551241 + AT_rich Low_complexity Low_complexity 1 28 0 1606 210 108 25 chrX 8423985 8424564 -168549576 - L1MD3 LINE L1 -5 7990 7267 762 223 22 33 chrX 8424974 8425158 -168548982 + MLT1C LTR MaLR 286 467 0 1312 175 64 46 chrX 8425339 8425452 -168548688 - MER96B DNA MER1_type? 0 417 308 2222 85 17 0 chrX 8425452 8425747 -168548393 + AluSx SINE Alu 1 300 -12 1312 175 64 46 chrX 8425747 8425959 -168548181 - MER96B DNA MER1_type? -109 308 86 1559 232 35 26 chrX 8425961 8426029 -168548111 + L1MB8 LINE L1 5720 5786 -392 1187 217 102 6 chrX 8426029 8426343 -168547797 + MER2 DNA MER2_type 1 344 0 1559 232 35 26 chrX 8426343 8426727 -168547413 + L1MB8 LINE L1 5786 6176 -2 354 261 0 0 chrX 8426736 8426824 -168547316 + MER96B DNA MER1_type? 325 412 -5 1723 156 7 3 chrX 8427435 8427724 -168546416 - AluJo SINE Alu -10 302 13 3516 171 30 24 chrX 8427736 8428407 -168545733 - L1MB2 LINE L1 -43 6128 5454 202 204 0 0 chrX 8428413 8428457 -168545683 - MIR SINE MIR -118 144 101 1061 248 148 9 chrX 8428458 8428797 -168545343 + MLT1B LTR MaLR 1 386 -4 309 286 238 0 chrX 8428895 8429000 -168545140 - MER5A DNA MER1_type -7 182 53 220 271 146 10 chrX 8429206 8429302 -168544838 + MER5C DNA MER1_type 212 320 -4 881 186 10 31 chrX 8429340 8429533 -168544607 - L1MB5 LINE L1 0 6174 5986 482 161 117 29 chrX 8429533 8429662 -168544478 - L1MB5 LINE L1 -228 5946 5803 561 312 115 23 chrX 8430052 8430488 -168543652 - L1MB5 LINE L1 -2069 5739 5264 221 288 128 24 chrX 8430590 8430715 -168543425 - MIR SINE MIR -11 251 114 723 197 165 101 chrX 8430928 8431321 -168542819 + MLT1C LTR MaLR 33 467 0 476 314 39 18 chrX 8431332 8431561 -168542579 + L1MC5 LINE L1 7692 7925 -36 743 142 112 18 chrX 8432694 8432863 -168541277 - MER20 DNA MER1_type -2 217 33 2352 132 64 58 chrX 8433273 8433742 -168540398 + MER4B LTR ERV1 1 472 -138 646 122 10 10 chrX 8433742 8433840 -168540300 + MER4A LTR ERV1 1 98 -566 1958 129 9 22 chrX 8433849 8434190 -168539950 + MER4A LTR ERV1 270 664 0 1232 77 0 0 chrX 8434209 8434365 -168539775 + MER4E LTR ERV1 611 766 0 741 180 0 0 chrX 8435990 8436118 -168538022 + FRAM SINE Alu 36 163 -13 820 177 96 53 chrX 8436676 8436885 -168537255 - MER20 DNA MER1_type 0 219 2 420 156 0 26 chrX 8437058 8437135 -168537005 - Charlie5 DNA MER1_type -2509 103 29 1928 148 0 3 chrX 8437331 8437635 -168536505 - AluJb SINE Alu -6 306 4 189 0 0 0 chrX 8437638 8437659 -168536481 + (T)n Simple_repeat Simple_repeat 1 21 0 1752 203 138 7 chrX 8438687 8439010 -168535130 + L1MB7 LINE L1 5666 6066 -118 1922 123 63 36 chrX 8439010 8439375 -168534765 + THE1C LTR MaLR 1 375 0 1752 203 138 7 chrX 8439375 8439499 -168534641 + L1MB7 LINE L1 6066 6172 -12 1472 145 76 46 chrX 8439870 8440173 -168533967 - AluJo SINE Alu 0 312 1 235 97 0 0 chrX 8441505 8441536 -168532604 + MLT1B LTR MaLR 358 388 -2 2667 150 2 9 chrX 8442344 8442797 -168531343 + L1MB3 LINE L1 5731 6180 -3 1163 197 10 0 chrX 8443115 8443323 -168530817 + MLT1B LTR MaLR 181 390 0 2463 64 0 0 chrX 8443378 8443689 -168530451 + AluY SINE Alu 1 311 0 806 149 113 0 chrX 8444678 8444819 -168529321 - FRAM SINE Alu -9 157 1 491 82 38 60 chrX 8444929 8445112 -168529028 + (CA)n Simple_repeat Simple_repeat 2 180 0 336 109 23 63 chrX 8445192 8445366 -168528774 + (CA)n Simple_repeat Simple_repeat 1 167 0 233 180 56 73 chrX 8445367 8445545 -168528595 + (CACAG)n Simple_repeat Simple_repeat 5 179 0 * 258 157 37 46 chrX 8445473 8445581 -168528559 + (CA)n Simple_repeat Simple_repeat 1 107 0 347 147 35 56 chrX 8445597 8445951 -168528189 + (CA)n Simple_repeat Simple_repeat 1 346 0 195 131 65 19 chrX 8445999 8446106 -168528034 + (CA)n Simple_repeat Simple_repeat 1 112 0 184 289 0 0 chrX 8446356 8446408 -168527732 - MIR SINE MIR -57 151 100 298 324 148 0 chrX 8447359 8447501 -168526639 + MIR3 SINE MIR 41 203 -5 1048 192 33 14 chrX 8448024 8448238 -168525902 + MER20 DNA MER1_type 2 219 0 1725 167 6 6 chrX 8448496 8448808 -168525332 - AluJb SINE Alu 0 312 1 536 293 72 71 chrX 8448810 8449061 -168525079 - HAL1 LINE L1 -160 2347 2098 2525 39 0 7 chrX 8449061 8449366 -168524774 - AluY SINE Alu -8 303 1 536 293 72 71 chrX 8449366 8449606 -168524534 - HAL1 LINE L1 -409 2098 1852 2250 84 0 3 chrX 8449606 8449903 -168524237 - AluSc SINE Alu -13 296 1 536 293 72 71 chrX 8449903 8450087 -168524053 - HAL1 LINE L1 -655 1852 1670 989 94 0 0 chrX 8450089 8450217 -168523923 - AluSq/x SINE Alu -184 128 1 506 261 86 37 chrX 8450218 8450463 -168523677 - HAL1 LINE L1 -868 1639 1383 916 180 115 6 chrX 8450600 8450783 -168523357 + MER3 DNA MER1_type 6 208 -1 477 226 0 20 chrX 8453307 8453409 -168520731 + MER20 DNA MER1_type 6 105 -114 265 359 68 13 chrX 8453948 8454182 -168519958 + MIR SINE MIR 7 253 -9 2116 117 3 0 chrX 8455812 8456119 -168518021 - AluSq SINE Alu -5 308 1 513 251 125 88 chrX 8457207 8457526 -168516614 + MLT1D LTR MaLR 2 332 -294 227 31 31 0 chrX 8457526 8457558 -168516582 + (CAAAAA)n Simple_repeat Simple_repeat 4 36 0 772 195 5 70 chrX 8457567 8457681 -168516459 + MLT1D LTR MaLR 319 416 -89 1471 168 47 20 chrX 8457681 8457979 -168516161 - AluJo SINE Alu -6 306 1 772 195 5 70 chrX 8457979 8458064 -168516076 + MLT1D LTR MaLR 416 505 0 206 81 27 0 chrX 8458127 8458164 -168515976 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 1766 157 7 4 chrX 8458169 8458449 -168515691 - AluJo SINE Alu -31 281 1 3407 177 38 7 chrX 8458636 8458976 -168515164 + L1MB7 LINE L1 5481 5809 -375 1629 181 7 16 chrX 8458976 8459286 -168514854 + AluJo SINE Alu 1 307 -5 3407 177 38 7 chrX 8459286 8459628 -168514512 + L1MB7 LINE L1 5809 6184 0 21 0 0 0 chrX 8460151 8460172 -168513968 + AT_rich Low_complexity Low_complexity 1 21 0 1323 179 0 4 chrX 8460174 8460403 -168513737 + AluJb SINE Alu 1 228 -84 1363 236 133 33 chrX 8460853 8461190 -168512950 - MLT1D LTR MaLR -7 498 103 1777 164 0 3 chrX 8461190 8461495 -168512645 - AluJo SINE Alu -8 304 1 1363 236 133 33 chrX 8461495 8461610 -168512530 - MLT1D LTR MaLR -402 103 1 215 220 40 0 chrX 8463233 8463283 -168510857 + (TATATG)n Simple_repeat Simple_repeat 6 57 0 1129 183 5 23 chrX 8463333 8463552 -168510588 - MER20 DNA MER1_type -4 215 1 228 226 28 94 chrX 8464591 8464697 -168509443 - MER41D LTR ERV1 -86 471 373 584 243 89 22 chrX 8464776 8465086 -168509054 - MER58 DNA MER1_type -2 2418 4 952 258 122 103 chrX 8465945 8466735 -168507405 + L1MC4a LINE L1 5971 6745 -1063 2127 128 0 0 chrX 8466735 8467041 -168507099 + AluSx SINE Alu 1 306 -6 952 258 122 103 chrX 8467041 8467237 -168506903 + L1MC4a LINE L1 6745 6983 -825 2763 13 0 0 chrX 8467237 8467548 -168506592 + AluY SINE Alu 1 311 0 952 258 122 103 chrX 8467548 8467663 -168506477 + L1MC4a LINE L1 6983 7094 -714 423 228 105 35 chrX 8467694 8467808 -168506332 - MER58B DNA MER1_type -29 312 191 2197 87 0 3 chrX 8467817 8468116 -168506024 - AluY SINE Alu -6 305 8 423 281 253 18 chrX 8468143 8468538 -168505602 + L1MC4 LINE L1 7192 7679 -363 1700 163 13 23 chrX 8468794 8469095 -168505045 - AluJo SINE Alu -14 298 1 1637 103 0 0 chrX 8469130 8469354 -168504786 + AluSg/x SINE Alu 83 306 -6 2100 114 0 10 chrX 8469489 8469796 -168504344 + AluSp SINE Alu 1 304 -9 200 256 0 0 chrX 8470867 8470906 -168503234 + G-rich Low_complexity Low_complexity 1 39 0 277 224 0 0 chrX 8472094 8472152 -168501988 + MER69 DNA AcHobo 509 566 -1960 243 88 0 0 chrX 8472397 8472431 -168501709 + (A)n Simple_repeat Simple_repeat 1 34 0 334 309 58 80 chrX 8474586 8474861 -168499279 - L2 LINE L2 -34 3238 2970 300 325 86 0 chrX 8474903 8475054 -168499086 - MIR SINE MIR -21 241 78 347 200 0 0 chrX 8476511 8476576 -168497564 - MER3 DNA MER1_type -5 204 140 2518 147 60 4 chrX 8476576 8477046 -168497094 + L1MB3 LINE L1 5688 6183 0 2119 102 0 3 chrX 8477805 8478099 -168496041 + AluSc SINE Alu 1 293 -16 191 221 78 52 chrX 8479302 8479379 -168494761 - MIR SINE MIR 0 262 184 733 230 83 5 chrX 8479380 8479597 -168494543 + L1MB1 LINE L1 5911 6144 -24 302 139 76 38 chrX 8479794 8479873 -168494267 + L1MB8 LINE L1 6097 6178 0 1301 161 51 0 chrX 8481198 8481434 -168492706 - L1MB7 LINE L1 -8 6176 5929 1720 181 50 11 chrX 8481440 8481799 -168492341 + MLT1B LTR MaLR 14 386 -4 1996 122 0 10 chrX 8482325 8482620 -168491520 + AluSx SINE Alu 7 298 -14 799 85 0 0 chrX 8482625 8482731 -168491409 - FLAM_C SINE Alu -36 107 2 456 35 0 0 chrX 8482942 8483000 -168491140 + (CA)n Simple_repeat Simple_repeat 2 59 0 251 93 23 0 chrX 8483096 8483139 -168491001 + (TCTCCC)n Simple_repeat Simple_repeat 6 49 0 1580 170 37 13 chrX 8484394 8484694 -168489446 - AluJo SINE Alu -5 307 1 605 256 0 19 chrX 8485037 8485197 -168488943 - MER58A DNA MER1_type -28 196 40 1436 155 0 45 chrX 8486014 8486270 -168487870 + L1MB3 LINE L1 5817 6052 -131 1398 158 88 32 chrX 8486270 8486554 -168487586 + AluJo SINE Alu 1 300 -2 1436 155 0 45 chrX 8486554 8486598 -168487542 + L1MB3 LINE L1 6052 6096 -87 458 242 224 19 chrX 8486598 8486759 -168487381 + MER58B DNA MER1_type 147 340 -1 245 238 48 24 chrX 8486780 8486864 -168487276 + L1M1 LINE L1 17 102 -7463 791 192 50 50 chrX 8487580 8487778 -168486362 + MER58B DNA MER1_type 140 337 -4 188 109 55 18 chrX 8488172 8488227 -168485913 + CT-rich Low_complexity Low_complexity 2 58 0 210 118 0 0 chrX 8488227 8488261 -168485879 + (CA)n Simple_repeat Simple_repeat 1 34 0 247 219 86 29 chrX 8489247 8489352 -168484788 + L2 LINE L2 2555 2665 -649 1584 145 0 0 chrX 8489361 8489609 -168484531 + AluJo SINE Alu 59 306 -6 2290 190 45 28 chrX 8489628 8490087 -168484053 + L1MB2 LINE L1 5653 6123 -48 2421 81 0 0 chrX 8490087 8490394 -168483746 + AluSx SINE Alu 1 307 -5 2290 190 45 28 chrX 8490394 8490444 -168483696 + L1MB2 LINE L1 6123 6171 0 321 237 154 39 chrX 8490455 8490611 -168483529 + Charlie4 DNA MER1_type 1783 1956 -5 225 313 45 0 chrX 8490822 8490934 -168483206 + (GCGTG)n Simple_repeat Simple_repeat 4 120 0 1852 149 3 7 chrX 8492036 8492345 -168481795 + AluJo SINE Alu 1 308 -4 463 168 21 11 chrX 8492361 8492456 -168481684 - MER3 DNA MER1_type -49 160 65 897 230 4 57 chrX 8492572 8492820 -168481320 - MER8 DNA MER2_type -4 235 1 1698 175 0 19 chrX 8493237 8493545 -168480595 - AluJo SINE Alu -10 302 1 825 229 5 11 chrX 8494929 8495117 -168479023 + AluJo SINE Alu 121 307 -5 629 248 13 7 chrX 8496039 8496188 -168477952 - MER58B DNA MER1_type -18 323 174 1742 128 42 23 chrX 8496226 8496532 -168477608 - AluJo SINE Alu 0 312 1 789 180 101 37 chrX 8498330 8498547 -168475593 - L1MB8 LINE L1 0 6178 5948 364 246 48 97 chrX 8499555 8499783 -168474357 + L1MD2 LINE L1 6143 6359 0 1011 178 29 34 chrX 8500149 8500237 -168473903 - MER20 DNA MER1_type -11 208 121 2052 157 99 20 chrX 8500237 8500632 -168473508 + MSTB LTR MaLR 1 426 0 1011 178 29 34 chrX 8500632 8500751 -168473389 - MER20 DNA MER1_type -98 121 2 375 299 84 13 chrX 8500802 8500956 -168473184 - MIR SINE MIR -8 254 90 2082 87 33 3 chrX 8501556 8501856 -168472284 + AluSx SINE Alu 1 309 -3 231 129 0 0 chrX 8502173 8502204 -168471936 + AluJb SINE Alu 1 31 -277 1723 148 14 0 chrX 8502206 8502490 -168471650 + AluJb SINE Alu 11 298 -14 656 181 0 97 chrX 8503231 8503339 -168470801 - MER58B DNA MER1_type -2094 326 236 1995 138 44 99 chrX 8503339 8503775 -168470365 - MLT2D LTR ERVL -2 412 1 656 181 0 97 chrX 8503775 8503821 -168470319 - MER58B DNA MER1_type -2184 236 187 919 160 71 6 chrX 8504099 8504268 -168469872 - MER20 DNA MER1_type 0 219 40 1962 142 0 3 chrX 8504569 8504872 -168469268 + AluJb SINE Alu 1 302 -10 2044 57 89 14 chrX 8504969 8505249 -168468891 - AluY SINE Alu -10 301 1 23059 130 68 23 chrX 8505276 8511345 -168462795 - L1PA8A LINE L1 -21 6425 1 299 194 31 0 chrX 8511358 8511430 -168462710 - MLT1A2 LTR MaLR -65 363 257 378 239 37 45 chrX 8511430 8511564 -168462576 - MLT1A2 LTR MaLR -76 298 166 229 184 0 0 chrX 8511559 8511597 -168462543 - MSTD LTR MaLR -140 256 219 * 183 220 0 60 chrX 8511641 8511691 -168462449 - L2 LINE L2 -69 3244 3198 231 288 15 15 chrX 8511732 8511798 -168462342 + MIR SINE MIR 18 83 -179 1195 194 26 15 chrX 8512090 8512363 -168461777 - MER33 DNA MER1_type -47 277 2 345 231 66 11 chrX 8513117 8513208 -168460932 - MIR SINE MIR -161 101 6 953 223 14 18 chrX 8513324 8513544 -168460596 - MER20 DNA MER1_type 0 219 1 2189 101 0 3 chrX 8513742 8514040 -168460100 - AluSq SINE Alu -14 299 3 1878 144 26 7 chrX 8514046 8514352 -168459788 - AluJo SINE Alu 0 312 1 2217 100 0 7 chrX 8514360 8514661 -168459479 - AluSq SINE Alu -14 299 1 792 144 0 30 chrX 8516319 8516451 -168457689 + FLAM_C SINE Alu 1 128 -5 676 188 0 19 chrX 8516454 8516614 -168457526 + GA-rich Low_complexity Low_complexity 2 158 0 346 148 0 0 chrX 8516616 8516670 -168457470 - AluJ/FLAM SINE Alu -210 92 39 1943 148 0 0 chrX 8516923 8517228 -168456912 - AluJb SINE Alu -7 305 1 268 295 26 0 chrX 8517762 8517840 -168456300 + MER116 DNA Mariner 1 80 0 2250 226 127 3 chrX 8518317 8518898 -168455242 - MER82 DNA MER2_type 0 653 1 34 24 0 0 chrX 8519742 8519783 -168454357 + AT_rich Low_complexity Low_complexity 1 41 0 196 69 0 0 chrX 8520555 8520584 -168453556 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1514 168 7 34 chrX 8520584 8520875 -168453265 - AluJb SINE Alu -1 311 1 540 0 0 0 chrX 8521456 8521516 -168452624 + (CA)n Simple_repeat Simple_repeat 2 61 0 1120 144 0 0 chrX 8522848 8523015 -168451125 + AluJb SINE Alu 135 301 -11 318 26 0 0 chrX 8523015 8523054 -168451086 + (TA)n Simple_repeat Simple_repeat 1 39 0 1801 149 0 13 chrX 8523077 8523379 -168450761 + AluJo SINE Alu 6 303 -9 214 229 0 21 chrX 8523769 8523817 -168450323 - MER5A DNA MER1_type -3 186 140 948 172 37 42 chrX 8523821 8524036 -168450104 - MER20 DNA MER1_type 0 219 6 1560 180 10 16 chrX 8524084 8524390 -168449750 + AluJo SINE Alu 1 304 -8 263 270 52 26 chrX 8524565 8524680 -168449460 + MLT1I LTR MaLR 57 174 -375 310 118 224 0 chrX 8524844 8524929 -168449211 + MLT1I LTR MaLR 281 384 -25 751 138 17 0 chrX 8525369 8525485 -168448655 + FLAM_C SINE Alu 1 118 -15 201 156 0 0 chrX 8525485 8525517 -168448623 + (CAAT)n Simple_repeat Simple_repeat 4 35 0 2330 190 36 20 chrX 8525684 8526179 -168447961 + MLT1D LTR MaLR 1 503 -2 1549 188 63 12 chrX 8526886 8527221 -168446919 + L1MB7 LINE L1 5833 6184 0 2945 133 23 40 chrX 8527522 8527821 -168446319 - MER4B LTR ERV1 0 779 476 1650 187 20 0 chrX 8527821 8528115 -168446025 + AluJb SINE Alu 1 300 -12 2945 133 23 40 chrX 8528115 8528404 -168445736 - MER4B LTR ERV1 -303 476 31 26 0 0 0 chrX 8528430 8528456 -168445684 + AT_rich Low_complexity Low_complexity 1 26 0 623 179 4 197 chrX 8529091 8529260 -168444880 + MER5A DNA MER1_type 1 114 -75 1499 167 10 38 chrX 8529260 8529553 -168444587 - AluJo SINE Alu -25 287 3 623 179 4 197 chrX 8529553 8529617 -168444523 + MER5A DNA MER1_type 114 189 0 1323 238 49 46 chrX 8529620 8530048 -168444092 + L1ME1 LINE L1 5681 6091 -71 1575 121 111 35 chrX 8530048 8530337 -168443803 + AluJo SINE Alu 1 311 -1 1323 238 49 46 chrX 8530337 8530408 -168443732 + L1ME1 LINE L1 6091 6160 -2 567 222 58 48 chrX 8531178 8531350 -168442790 - MER20 DNA MER1_type 0 219 46 619 183 35 9 chrX 8531350 8531465 -168442675 - LTR8A LTR ERV1 0 727 610 615 104 26 70 chrX 8531475 8531590 -168442550 - LTR8A LTR ERV1 -617 110 1 691 243 24 18 chrX 8531593 8531762 -168442378 - MER4B-int LTR ERV1 -4 6259 6090 765 169 77 64 chrX 8531840 8532116 -168442024 - MER4B-int LTR ERV1 -105 6226 5914 7611 150 59 49 chrX 8532125 8533850 -168440290 - MER4B-int LTR ERV1 -529 5417 3805 7011 102 58 36 chrX 8533849 8534102 -168440038 - MER4B-int LTR ERV1 -1802 3078 2832 * 2128 84 3 14 chrX 8534102 8534389 -168439751 + AluSp SINE Alu 2 285 -28 243 0 0 0 chrX 8534389 8534416 -168439724 + (CA)n Simple_repeat Simple_repeat 2 28 0 7011 102 58 36 chrX 8534416 8534888 -168439252 - MER4B-int LTR ERV1 -2048 2832 2315 2053 85 41 0 chrX 8534888 8535178 -168438962 - AluSg SINE Alu 0 301 1 7011 102 58 36 chrX 8535178 8535584 -168438556 - MER4B-int LTR ERV1 -2565 2315 1919 1727 147 102 30 chrX 8535586 8535947 -168438193 - LTR8A LTR ERV1 -340 387 1 284 114 0 65 chrX 8536249 8536295 -168437845 - MIR SINE MIR -50 158 115 814 247 28 13 chrX 8536449 8536701 -168437439 + L1MB7 LINE L1 5926 6334 0 1897 100 40 27 chrX 8538809 8539136 -168435004 + AluSx SINE Alu 1 312 0 2170 100 0 0 chrX 8539181 8539481 -168434659 + AluSx SINE Alu 1 300 -12 23 0 0 0 chrX 8540125 8540148 -168433992 + AT_rich Low_complexity Low_complexity 1 23 0 2177 86 17 0 chrX 8541428 8541718 -168432422 - AluY SINE Alu -16 295 1 1285 169 61 102 chrX 8541763 8542076 -168432064 + AluJo SINE Alu 1 300 -2 2036 126 3 0 chrX 8543421 8543722 -168430418 + AluSq SINE Alu 1 302 -11 1710 111 71 7 chrX 8543800 8544080 -168430060 + AluSx SINE Alu 1 298 -14 761 71 27 18 chrX 8544084 8544196 -168429944 + L1MA2 LINE L1 6135 6247 -57 960 229 73 89 chrX 8544364 8544735 -168429405 - MLT1J LTR MaLR 0 511 147 203 262 0 0 chrX 8544735 8544796 -168429344 + T-rich Low_complexity Low_complexity 1 61 0 2042 113 0 0 chrX 8544825 8545107 -168429033 - AluSq SINE Alu -31 282 1 286 315 35 14 chrX 8545107 8545250 -168428890 - MLT1J LTR MaLR -355 156 11 1985 105 54 0 chrX 8546855 8547149 -168426991 - AluSg SINE Alu 0 310 1 954 172 0 6 chrX 8547370 8547544 -168426596 - FRAM SINE Alu -4 172 1 1273 226 40 17 chrX 8547544 8547840 -168426300 - MLT1D LTR MaLR -202 303 1 1550 164 25 21 chrX 8547876 8548156 -168425984 + AluJo SINE Alu 2 282 -30 715 214 6 40 chrX 8548450 8548623 -168425517 - L1MB7 LINE L1 -16 6168 6002 575 122 41 10 chrX 8548631 8548729 -168425411 - L1MB7 LINE L1 -268 5916 5816 409 141 14 28 chrX 8549309 8549380 -168424760 - MLT1A1 LTR MaLR -1 364 295 2128 106 3 0 chrX 8549380 8549672 -168424468 + AluSx SINE Alu 1 293 -19 910 171 56 60 chrX 8549672 8549735 -168424405 + L1MB5 LINE L1 5612 5674 -500 1808 152 7 0 chrX 8549735 8550024 -168424116 + AluJo SINE Alu 1 291 -21 910 171 56 60 chrX 8550024 8550176 -168423964 + L1MB5 LINE L1 5674 5826 -348 1552 156 15 7 chrX 8550184 8550453 -168423687 + AluJb SINE Alu 8 278 -34 771 173 8 0 chrX 8550484 8550611 -168423529 + FLAM_C SINE Alu 5 132 -11 1134 157 10 5 chrX 8550616 8550813 -168423327 + L1MB5 LINE L1 5816 6013 -161 1697 120 70 94 chrX 8550817 8551257 -168422883 - THE1C LTR MaLR 0 375 1 901 160 0 0 chrX 8551261 8551411 -168422729 + L1MB5 LINE L1 6017 6166 -8 1076 206 14 14 chrX 8552337 8552546 -168421594 + MER58A DNA MER1_type 1 209 -15 200 182 0 0 chrX 8553032 8553065 -168421075 + CT-rich Low_complexity Low_complexity 5 37 0 261 0 0 0 chrX 8553204 8553233 -168420907 + (T)n Simple_repeat Simple_repeat 1 29 0 2157 87 0 13 chrX 8554973 8555272 -168418868 - AluSx SINE Alu -16 296 2 527 193 67 8 chrX 8555363 8555482 -168418658 + L1ME4a LINE L1 5962 6087 -34 2150 97 3 0 chrX 8555525 8555815 -168418325 - AluSq SINE Alu -17 296 6 1936 132 20 0 chrX 8555891 8556187 -168417953 - AluSx SINE Alu -10 302 1 768 132 6 93 chrX 8556196 8556378 -168417762 + L1MD3 LINE L1 7822 7987 -8 827 125 0 56 chrX 8556999 8557143 -168416997 - AluJb SINE Alu -5 307 172 2034 113 0 0 chrX 8557143 8557418 -168416722 - AluSx SINE Alu -37 275 1 1324 143 95 0 chrX 8557730 8557961 -168416179 + AluJo SINE Alu 35 287 -25 1903 136 3 23 chrX 8558330 8558638 -168415502 - AluJo SINE Alu -10 302 1 180 77 0 0 chrX 8558927 8558953 -168415187 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 892 152 7 0 chrX 8558960 8559098 -168415042 - FRAM SINE Alu -30 146 8 207 100 0 0 chrX 8559471 8559501 -168414639 + (A)n Simple_repeat Simple_repeat 1 30 0 191 242 19 25 chrX 8560139 8560296 -168413844 + CT-rich Low_complexity Low_complexity 2 157 0 194 128 26 0 chrX 8560355 8560394 -168413746 + (CCAA)n Simple_repeat Simple_repeat 2 41 0 766 212 35 6 chrX 8560826 8560996 -168413144 - MER20 DNA MER1_type -44 175 1 704 106 0 0 chrX 8561225 8561319 -168412821 + AluSq/x SINE Alu 41 134 -179 1889 128 6 3 chrX 8561319 8561631 -168412509 + AluSq SINE Alu 1 313 0 1454 176 49 14 chrX 8562231 8562515 -168411625 - AluJb SINE Alu -18 294 1 1625 199 92 0 chrX 8562522 8562893 -168411247 - L1MB7 LINE L1 0 6184 5780 1545 158 12 79 chrX 8562895 8563224 -168410916 - AluJo SINE Alu -5 307 1 270 326 39 31 chrX 8563229 8563358 -168410782 - L2 LINE L2 -2 3270 3141 719 167 0 16 chrX 8563654 8563780 -168410360 + FLAM_A SINE Alu 1 124 -9 2243 106 6 0 chrX 8566132 8566443 -168407697 - AluSq SINE Alu 0 313 1 2121 117 3 13 chrX 8567353 8567662 -168406478 - AluSx SINE Alu -6 306 1 1118 128 137 10 chrX 8568863 8569067 -168405073 - AluSx SINE Alu -19 293 64 2097 148 26 0 chrX 8570031 8570370 -168403770 - MER7A DNA MER2_type 0 346 1 1542 171 45 31 chrX 8571421 8571708 -168402432 - AluJo SINE Alu -21 291 1 806 269 138 18 chrX 8572004 8572395 -168401745 - L2 LINE L2 -17 3296 2859 1632 202 20 69 chrX 8572668 8573251 -168400889 - LTR27 LTR ERV1 0 969 1 225 0 0 0 chrX 8574237 8574262 -168399878 + (T)n Simple_repeat Simple_repeat 1 25 0 1496 190 15 0 chrX 8574891 8575160 -168398980 - Tigger3(Golem) DNA MER2_type -1 3028 2756 8044 109 47 6 chrX 8575415 8576657 -168397483 - HSMAR2 DNA Mariner -1 1301 9 859 265 75 69 chrX 8577050 8577586 -168396554 + LTR67 LTR ERVL 11 549 -8 222 309 161 7 chrX 8577882 8578031 -168396109 - L2 LINE L2 -1614 1700 1529 1949 168 3 0 chrX 8578170 8578474 -168395666 + AluSx SINE Alu 1 305 -7 1146 144 78 6 chrX 8578479 8578659 -168395481 - AluJb SINE Alu -31 281 89 27 62 0 0 chrX 8582944 8582992 -168391148 + AT_rich Low_complexity Low_complexity 1 48 0 192 77 0 0 chrX 8583139 8583165 -168390975 + (GA)n Simple_repeat Simple_repeat 2 27 0 379 241 12 0 chrX 8584084 8584167 -168389973 + MER58A DNA MER1_type 2 85 -22 407 187 18 10 chrX 8584577 8584598 -168389542 - MER20 DNA MER1_type -143 76 57 1766 198 15 0 chrX 8584598 8584941 -168389199 + MER7A DNA MER2_type 1 346 0 407 187 18 10 chrX 8584941 8585016 -168389124 - MER20 DNA MER1_type -162 57 3 864 291 128 10 chrX 8585484 8585897 -168388243 + LTR16B LTR ERVL 3 464 0 937 103 8 0 chrX 8586129 8586255 -168387885 + FLAM_C SINE Alu 1 127 -16 2327 108 0 3 chrX 8586515 8586821 -168387319 + AluSx SINE Alu 1 305 -7 2389 106 3 0 chrX 8587606 8587917 -168386223 + AluSx SINE Alu 1 312 0 1967 125 27 27 chrX 8588886 8589183 -168384957 - AluJo SINE Alu -15 297 1 825 160 0 0 chrX 8589362 8589493 -168384647 + FLAM_C SINE Alu 1 131 -2 2126 119 26 19 chrX 8589990 8590300 -168383840 - AluJb SINE Alu 0 312 1 1684 155 50 0 chrX 8591365 8591643 -168382497 - AluJb SINE Alu -20 292 1 629 291 70 80 chrX 8593625 8594054 -168380086 - L1M4c LINE L1 -4848 1798 1366 1674 147 134 31 chrX 8594054 8594441 -168379699 + MSTA LTR MaLR 2 428 0 629 291 70 80 chrX 8594441 8594499 -168379641 - L1M4c LINE L1 -5280 1366 1309 1370 170 129 15 chrX 8594499 8594770 -168379370 - AluJo SINE Alu 0 302 1 629 291 70 80 chrX 8594770 8594929 -168379211 - L1M4c LINE L1 -5337 1309 1134 1583 179 47 24 chrX 8595344 8595640 -168378500 - AluJo SINE Alu -9 303 1 291 211 0 0 chrX 8596918 8597013 -168377127 + CT-rich Low_complexity Low_complexity 5 99 0 615 252 7 0 chrX 8597472 8597615 -168376525 + MER82 DNA MER2_type 25 168 -485 1194 133 12 0 chrX 8597617 8597782 -168376358 - AluJo/FRAM SINE Alu -8 304 138 2018 147 0 19 chrX 8597782 8598089 -168376051 - AluJo SINE Alu -11 301 1 1140 99 14 94 chrX 8598561 8598774 -168375366 - MER30 DNA MER1_type -34 196 1 529 270 20 7 chrX 8598969 8599117 -168375023 - L1MD3 LINE L1 -14 7981 7832 807 274 91 13 chrX 8599132 8599439 -168374701 - L1MD2 LINE L1 -234 6125 5795 272 136 0 0 chrX 8600216 8600260 -168373880 + L1MB5 LINE L1 6019 6062 -112 2075 116 0 0 chrX 8600996 8601264 -168372876 + AluSx SINE Alu 35 302 -10 2384 219 44 4 chrX 8601408 8601948 -168372192 + MER68 LTR ERV1 1 562 0 1795 176 4 4 chrX 8602163 8602441 -168371699 - AluJo SINE Alu -34 278 1 1872 154 3 0 chrX 8602467 8602753 -168371387 - AluJo SINE Alu -25 287 1 180 0 0 0 chrX 8602784 8602804 -168371336 + (CAA)n Simple_repeat Simple_repeat 2 21 0 829 227 75 14 chrX 8602975 8603253 -168370887 - MER33 DNA MER1_type 0 324 30 911 62 86 0 chrX 8603269 8603397 -168370743 + MER85 DNA T2_type 1 139 0 416 277 50 37 chrX 8604484 8604654 -168369486 + MIR SINE MIR 32 204 -58 1134 175 9 31 chrX 8604956 8605179 -168368961 - MER58A DNA MER1_type 0 224 7 2087 82 56 0 chrX 8605244 8605551 -168368589 - AluSp SINE Alu 0 322 1 1364 121 5 33 chrX 8605606 8605857 -168368283 - AluSq SINE Alu 0 318 74 2295 108 0 0 chrX 8607535 8607832 -168366308 + AluSx SINE Alu 1 297 -15 2416 95 3 3 chrX 8608783 8609089 -168365051 - AluSx SINE Alu -6 306 1 1581 181 23 0 chrX 8609199 8609320 -168364820 + AluJo SINE Alu 2 119 -193 207 0 0 0 chrX 8609320 8609343 -168364797 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1581 181 23 0 chrX 8609343 8609480 -168364660 + AluJo SINE Alu 119 266 -46 466 211 26 26 chrX 8609495 8609609 -168364531 + MER58A DNA MER1_type 3 116 0 * 2036 178 27 5 chrX 8609608 8609984 -168364156 + MLT1B LTR MaLR 1 384 -6 457 248 46 0 chrX 8609990 8610099 -168364041 + MER58A DNA MER1_type 111 224 0 426 272 0 0 chrX 8611134 8611296 -168362844 + (CA)n Simple_repeat Simple_repeat 1 162 0 204 182 0 0 chrX 8612059 8612103 -168362037 + (CCG)n Simple_repeat Simple_repeat 3 46 0 843 228 20 18 chrX 8612543 8612765 -168361375 + MER20 DNA MER1_type 7 219 0 1753 185 3 3 chrX 8613534 8613826 -168360314 - AluJo SINE Alu -19 293 2 1966 121 49 39 chrX 8614223 8614530 -168359610 + AluJo SINE Alu 1 310 -2 898 174 0 0 chrX 8614807 8614945 -168359195 + AluJb SINE Alu 156 293 -19 1765 168 9 37 chrX 8615619 8615940 -168358200 - AluJb SINE Alu 0 312 1 220 352 101 25 chrX 8618759 8618918 -168355222 - MIR SINE MIR -75 187 17 275 282 111 0 chrX 8619657 8619801 -168354339 + MIR3 SINE MIR 4 160 -62 1763 196 37 0 chrX 8619988 8620340 -168353800 + MLT1A1 LTR MaLR 1 365 0 842 167 48 12 chrX 8620834 8621002 -168353138 - MER20 DNA MER1_type 0 219 46 1178 227 0 0 chrX 8621772 8621992 -168352148 + MER58A DNA MER1_type 1 220 -4 338 263 0 0 chrX 8622004 8622080 -168352060 - MER2 DNA MER2_type 0 345 270 256 333 0 0 chrX 8622330 8622408 -168351732 + MIR3 SINE MIR 119 196 -12 319 230 82 59 chrX 8622442 8622577 -168351563 - MER74B LTR ERVL -13 609 472 2380 89 0 22 chrX 8624327 8624641 -168349499 - AluSq SINE Alu -6 307 1 1636 187 21 3 chrX 8625365 8625538 -168348602 + AluJb SINE Alu 3 184 -128 216 0 0 0 chrX 8625538 8625562 -168348578 + (G)n Simple_repeat Simple_repeat 1 24 0 1636 187 21 3 chrX 8625562 8625677 -168348463 + AluJb SINE Alu 184 296 -16 1700 174 0 14 chrX 8625679 8625966 -168348174 + AluJb SINE Alu 1 283 -29 486 143 0 0 chrX 8625999 8626076 -168348064 + MER83B LTR ERV1 226 302 -76 21 0 0 0 chrX 8626078 8626099 -168348041 + AT_rich Low_complexity Low_complexity 1 21 0 2116 111 7 10 chrX 8626173 8626461 -168347679 - AluSx SINE Alu -25 287 1 329 234 0 0 chrX 8626468 8626532 -168347608 + MER2 DNA MER2_type 282 345 0 207 204 0 0 chrX 8626563 8626617 -168347523 + (TA)n Simple_repeat Simple_repeat 1 54 0 494 299 54 9 chrX 8626669 8626893 -168347247 + MIR SINE MIR 29 262 0 2129 108 78 9 chrX 8627060 8627394 -168346746 + MLT1A1 LTR MaLR 9 365 0 1481 186 43 25 chrX 8628833 8629156 -168344984 + MER77 LTR ERV1 277 605 0 2528 178 78 68 chrX 8629671 8630391 -168343749 - LTR8A LTR ERV1 0 727 1 1514 220 36 3 chrX 8630391 8630700 -168343440 - HUERS-P1 LTR ERV1 0 6263 5945 780 176 171 40 chrX 8630778 8630977 -168343163 - HUERS-P1 LTR ERV1 -57 6274 6050 12865 161 69 57 chrX 8631020 8632985 -168341155 - HUERS-P1 LTR ERV1 -341 6257 4316 1862 62 9 0 chrX 8632985 8633212 -168340928 - AluY SINE Alu -33 278 50 12865 161 69 57 chrX 8633212 8634703 -168339437 - HUERS-P1 LTR ERV1 -2282 4316 2011 450 0 0 0 chrX 8634703 8634753 -168339387 + (TA)n Simple_repeat Simple_repeat 1 50 0 12865 161 69 57 chrX 8634753 8634788 -168339352 - HUERS-P1 LTR ERV1 -4587 2011 1978 489 205 26 43 chrX 8634788 8634905 -168339235 - LTR8A LTR ERV1 -612 115 1 586 264 122 10 chrX 8635255 8635452 -168338688 + MER20 DNA MER1_type 1 219 0 862 285 62 53 chrX 8636222 8636455 -168337685 - L1MD2 LINE L1 -214 6145 5905 2271 116 0 6 chrX 8636455 8636766 -168337374 - AluSx SINE Alu -3 309 1 862 285 62 53 chrX 8636766 8636964 -168337176 - L1MD2 LINE L1 -454 5905 5710 305 115 0 0 chrX 8637221 8637273 -168336867 - L1MB3 LINE L1 -7 6176 6125 1353 166 8 36 chrX 8637279 8637532 -168336608 - AluJo SINE Alu -25 287 42 2147 174 10 17 chrX 8637532 8637947 -168336193 - L1MB3 LINE L1 -42 6141 5730 1673 147 90 4 chrX 8638705 8638971 -168335169 - AluJb SINE Alu -17 295 7 1200 151 31 5 chrX 8639096 8639406 -168334734 - MLT1A1 LTR MaLR 0 365 1 1816 235 26 22 chrX 8640543 8641041 -168333099 + L1ME1 LINE L1 5566 6065 -101 1671 122 3 107 chrX 8641116 8641443 -168332697 + AluJb SINE Alu 1 293 -19 2534 91 37 6 chrX 8641989 8642342 -168331798 - THE1B LTR MaLR 0 364 1 1216 229 93 34 chrX 8644645 8645086 -168329054 + MLT1C LTR MaLR 1 467 0 2392 69 0 0 chrX 8647068 8647358 -168326782 - AluSc SINE Alu -19 290 1 1753 170 26 7 chrX 8647362 8647668 -168326472 - AluJb SINE Alu 0 312 1 345 171 8 179 chrX 8647900 8648017 -168326123 + MLT1F LTR MaLR 55 163 -430 1257 203 32 7 chrX 8648064 8648345 -168325795 + MLT1E1 LTR MaLR 367 654 0 1975 125 6 55 chrX 8648898 8649226 -168324914 + AluJb SINE Alu 1 312 0 300 135 68 54 chrX 8649720 8649794 -168324346 - MIR3 SINE MIR -25 183 109 402 221 176 22 chrX 8649904 8650040 -168324100 - MER20 DNA MER1_type -62 157 1 1650 175 0 56 chrX 8650152 8650455 -168323685 + AluJo SINE Alu 1 286 -26 1608 136 4 0 chrX 8654909 8655144 -168318996 + AluJb SINE Alu 61 296 -16 2111 132 0 10 chrX 8655288 8655599 -168318541 + AluSx SINE Alu 5 312 0 1631 182 0 33 chrX 8656367 8656674 -168317466 - AluJb SINE Alu -15 297 1 808 187 91 5 chrX 8656906 8657104 -168317036 - MER20 DNA MER1_type 0 219 5 693 257 6 0 chrX 8657381 8657556 -168316584 + MER58B DNA MER1_type 163 338 -3 1270 161 96 45 chrX 8658189 8658524 -168315616 + L1MB7 LINE L1 5546 5897 -287 2050 110 11 14 chrX 8659312 8659633 -168314507 + AluSx SINE Alu 1 320 0 39 60 0 0 chrX 8660262 8660329 -168313811 + AT_rich Low_complexity Low_complexity 1 67 0 378 0 0 0 chrX 8663715 8663757 -168310383 + (TTG)n Simple_repeat Simple_repeat 2 43 0 1641 204 105 15 chrX 8663765 8663829 -168310311 - L1MB5 LINE L1 -1 6179 6122 828 123 0 43 chrX 8663829 8663967 -168310173 - FLAM_C SINE Alu -1 132 1 1641 204 105 15 chrX 8663967 8664372 -168309768 - L1MB5 LINE L1 -58 6122 5689 466 145 13 0 chrX 8664956 8665032 -168309108 + MER20 DNA MER1_type 30 106 -113 415 265 88 6 chrX 8665109 8665290 -168308850 + MLT1F LTR MaLR 269 464 -78 895 119 0 0 chrX 8665591 8665709 -168308431 + FLAM_C SINE Alu 1 118 -25 222 281 0 24 chrX 8665721 8665803 -168308337 - MIR SINE MIR 0 262 183 21 0 0 0 chrX 8665803 8665824 -168308316 + AT_rich Low_complexity Low_complexity 1 21 0 216 362 34 0 chrX 8665900 8666049 -168308091 - MIR SINE MIR -94 168 15 2199 94 3 14 chrX 8717480 8717777 -168256363 + AluSp SINE Alu 1 294 -19 1386 244 90 5 chrX 8718212 8718614 -168255526 + L1MD3 LINE L1 7560 7995 0 1538 160 23 20 chrX 8718752 8719052 -168255088 + AluJo SINE Alu 1 301 -11 1712 166 3 3 chrX 8719322 8719623 -168254517 - AluJb SINE Alu -11 301 1 476 157 29 0 chrX 8719696 8719798 -168254342 + GA-rich Low_complexity Low_complexity 5 109 0 245 234 31 16 chrX 8719801 8719865 -168254275 + MLT2C1 LTR ERVL 2 66 -331 1842 219 13 44 chrX 8719871 8720345 -168253795 - MLT1C LTR MaLR -8 459 1 859 206 110 77 chrX 8720345 8720669 -168253471 + MLT2C1 LTR ERVL 60 394 -3 319 254 15 142 chrX 8720965 8721170 -168252970 + MIR SINE MIR 30 208 -54 2178 90 3 0 chrX 8721449 8721737 -168252403 - AluSq SINE Alu -24 289 1 509 120 0 0 chrX 8722219 8722294 -168251846 - U3 snRNA snRNA -130 87 13 2250 76 0 7 chrX 8723110 8723414 -168250726 - AluSc SINE Alu -7 302 1 1826 144 11 0 chrX 8724339 8724653 -168249487 + AluJb SINE Alu 1 317 0 2134 72 3 28 chrX 8724728 8724909 -168249231 - AluY SINE Alu 0 307 135 198 0 0 0 chrX 8724909 8724931 -168249209 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 2134 72 3 28 chrX 8724931 8725063 -168249077 - AluY SINE Alu -172 135 1 207 180 120 0 chrX 8726137 8726187 -168247953 + L2 LINE L2 3257 3312 -1 1926 168 18 31 chrX 8726197 8726579 -168247561 + L1MB5 LINE L1 5798 6174 0 1033 106 0 0 chrX 8727391 8727523 -168246617 - AluSg/x SINE Alu -25 287 156 1077 243 130 18 chrX 8728622 8728695 -168245445 + MLT1E LTR MaLR 20 83 -510 2363 89 6 13 chrX 8728695 8729008 -168245132 - AluSx SINE Alu -1 311 1 1077 243 130 18 chrX 8729008 8729191 -168244949 + MLT1E LTR MaLR 83 244 -349 1773 185 0 30 chrX 8729191 8729493 -168244647 - AluJb SINE Alu -19 293 1 1077 243 130 18 chrX 8729493 8729704 -168244436 + MLT1E LTR MaLR 244 585 -8 2264 159 10 8 chrX 8729705 8730094 -168244046 + MLT1B LTR MaLR 1 390 0 296 130 0 0 chrX 8731029 8731075 -168243065 + Alu SINE Alu 247 292 -10 343 206 65 0 chrX 8731381 8731473 -168242667 + MLT2B2 LTR ERVL 1 98 -417 280 335 97 0 chrX 8731495 8731650 -168242490 + MIR SINE MIR 80 249 -13 733 231 27 43 chrX 8731841 8731961 -168242179 - MER5A DNA MER1_type 0 189 72 2331 83 17 3 chrX 8731961 8732262 -168241878 - AluSx SINE Alu -7 305 1 733 231 27 43 chrX 8732262 8732327 -168241813 - MER5A DNA MER1_type -117 72 7 1927 85 114 14 chrX 8732367 8732648 -168241492 - AluSg SINE Alu 0 310 2 447 197 0 0 chrX 8733109 8733185 -168240955 + AluS SINE Alu 3 78 -234 324 276 9 19 chrX 8733193 8733298 -168240842 - MLT2B1 LTR ERVL -331 189 86 1652 136 70 86 chrX 8733300 8733602 -168240538 + AluJb SINE Alu 1 297 -15 2321 88 3 0 chrX 8733858 8734168 -168239972 + AluSp SINE Alu 1 311 0 1678 212 42 25 chrX 8734227 8734675 -168239465 + MLT2B1 LTR ERVL 1 456 -64 22 0 0 0 chrX 8734700 8734722 -168239418 + AT_rich Low_complexity Low_complexity 1 22 0 1264 228 141 9 chrX 8734723 8735222 -168238918 - MLT1E1 LTR MaLR -38 616 5 194 139 47 0 chrX 8735705 8735748 -168238392 + CT-rich Low_complexity Low_complexity 2 46 0 732 205 0 0 chrX 8735748 8735875 -168238265 - FRAM SINE Alu -46 130 4 660 209 209 0 chrX 8736081 8736234 -168237906 + MER5A DNA MER1_type 2 186 -3 1376 161 169 0 chrX 8736238 8736499 -168237641 - AluSx SINE Alu -7 305 1 5954 141 66 47 chrX 8736633 8737884 -168236256 - MER41-int LTR ERV1 -867 5079 3805 * 6659 104 58 36 chrX 8737883 8738136 -168236004 - MER41-int LTR ERV1 -1802 3078 2832 2211 94 3 14 chrX 8738136 8738423 -168235717 + AluSp SINE Alu 2 285 -28 423 0 0 0 chrX 8738423 8738470 -168235670 + (CA)n Simple_repeat Simple_repeat 2 48 0 6659 104 58 36 chrX 8738470 8738942 -168235198 - MER41-int LTR ERV1 -2048 2832 2315 2186 85 41 0 chrX 8738942 8739232 -168234908 - AluSg SINE Alu 0 301 1 6659 104 58 36 chrX 8739232 8739638 -168234502 - MER41-int LTR ERV1 -2565 2315 1919 1628 147 102 30 chrX 8739640 8740001 -168234139 - LTR8A LTR ERV1 -340 387 1 284 114 0 65 chrX 8740304 8740350 -168233790 - MIR SINE MIR -50 158 115 786 254 33 12 chrX 8740504 8740748 -168233392 + L1MB7 LINE L1 5926 6174 -10 2017 114 40 17 chrX 8742867 8743194 -168230946 + AluSx SINE Alu 1 312 0 2316 102 0 0 chrX 8743239 8743542 -168230598 + AluSx SINE Alu 1 303 -9 23 0 0 0 chrX 8744183 8744206 -168229934 + AT_rich Low_complexity Low_complexity 1 23 0 2346 85 17 0 chrX 8745483 8745776 -168228364 - AluY SINE Alu -13 298 1 1343 166 64 88 chrX 8745821 8746116 -168228024 + AluJo SINE Alu 1 288 -24 2188 126 3 0 chrX 8747469 8747770 -168226370 + AluSq SINE Alu 1 302 -11 1866 117 69 7 chrX 8747848 8748138 -168226002 + AluSx SINE Alu 1 308 -4 1042 87 37 6 chrX 8748138 8748293 -168225847 + L1MA2 LINE L1 6141 6300 -4 343 271 78 36 chrX 8748587 8748793 -168225347 + L1ME1 LINE L1 5960 6162 -4 2151 103 27 0 chrX 8748940 8749241 -168224899 + AluSx SINE Alu 1 309 -3 1314 169 4 30 chrX 8749294 8749525 -168224615 + AluJo SINE Alu 12 236 -76 183 100 0 0 chrX 8749639 8749669 -168224471 + (TA)n Simple_repeat Simple_repeat 1 30 0 271 266 73 32 chrX 8749670 8749804 -168224336 - MIR3 SINE MIR -54 154 22 286 155 14 113 chrX 8750009 8750080 -168224060 - MER20 DNA MER1_type -154 65 2 25 0 0 0 chrX 8753120 8753145 -168220995 + GC_rich Low_complexity Low_complexity 1 25 0 34 65 0 0 chrX 8753201 8753263 -168220877 + GC_rich Low_complexity Low_complexity 1 62 0 24 0 0 0 chrX 8753324 8753348 -168220792 + GC_rich Low_complexity Low_complexity 1 24 0 204 40 0 0 chrX 8753395 8753420 -168220720 + (CGG)n Simple_repeat Simple_repeat 3 27 0 2390 74 13 10 chrX 8754622 8754933 -168219207 - AluSx SINE Alu 0 312 1 1478 218 69 21 chrX 8756260 8756678 -168217462 + L1MC2 LINE L1 4832 5269 -877 507 111 14 0 chrX 8756704 8756776 -168217364 + AluJ SINE Alu 213 285 -27 339 25 0 0 chrX 8756788 8756828 -168217312 + (TG)n Simple_repeat Simple_repeat 2 41 0 234 229 0 0 chrX 8756828 8756884 -168217256 + L1MC4 LINE L1 6654 6709 -1333 * 5235 168 31 28 chrX 8756866 8757942 -168216198 + L1MC2 LINE L1 5266 6344 0 1986 155 0 37 chrX 8757953 8758276 -168215864 + AluJo SINE Alu 2 312 0 2295 96 3 0 chrX 8758534 8758827 -168215313 - AluSx SINE Alu -18 294 1 2042 138 97 17 chrX 8759587 8759948 -168214192 + MLT1B LTR MaLR 1 390 0 2023 142 13 0 chrX 8760140 8760443 -168213697 + AluJb SINE Alu 1 307 -5 556 189 34 92 chrX 8760528 8760734 -168213406 - Charlie4a DNA MER1_type -71 437 244 1282 143 5 24 chrX 8760793 8760970 -168213170 - AluJb SINE Alu -2 310 131 396 40 0 0 chrX 8760970 8761020 -168213120 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 2173 91 0 11 chrX 8761020 8761307 -168212833 - AluSx SINE Alu -28 284 1 1282 143 5 24 chrX 8761307 8761337 -168212803 - AluJb SINE Alu -179 133 106 464 146 10 10 chrX 8761346 8761449 -168212691 + MER96B DNA MER1_type? 69 171 -246 839 152 0 40 chrX 8761808 8761922 -168212218 - MLT1D LTR MaLR -4 501 393 1973 181 72 84 chrX 8761922 8762407 -168211733 + MLT2B1 LTR ERVL 2 482 -38 354 45 0 0 chrX 8762407 8762451 -168211689 + (TA)n Simple_repeat Simple_repeat 1 44 0 1973 181 72 84 chrX 8762451 8762490 -168211650 + MLT2B1 LTR ERVL 482 520 0 839 152 0 40 chrX 8762490 8762526 -168211614 - MLT1D LTR MaLR -112 393 357 1911 171 3 3 chrX 8762528 8762838 -168211302 + AluJo SINE Alu 1 310 -2 694 160 17 33 chrX 8762844 8763025 -168211115 + GA-rich Low_complexity Low_complexity 3 180 0 929 244 57 37 chrX 8763029 8763382 -168210758 - MLT1D LTR MaLR -145 360 1 1828 110 18 28 chrX 8763727 8764009 -168210131 + AluSx SINE Alu 21 299 -13 343 214 34 26 chrX 8764022 8764139 -168210001 - L1MA10 LINE L1 -7 6327 6210 2416 145 20 86 chrX 8764149 8764215 -168209925 - MLT1D LTR MaLR -1 504 435 615 197 354 36 chrX 8764215 8764318 -168209822 - AluJo SINE Alu -7 295 226 2390 99 0 6 chrX 8764318 8764632 -168209508 - AluSx SINE Alu 0 312 1 615 197 354 36 chrX 8764632 8764751 -168209389 - AluJo SINE Alu -76 226 2 2416 145 20 86 chrX 8764751 8764977 -168209163 - MLT1D LTR MaLR -70 435 260 1963 153 45 70 chrX 8764977 8765420 -168208720 + MSTB1 LTR MaLR 1 432 0 2416 145 20 86 chrX 8765420 8765664 -168208476 - MLT1D LTR MaLR -245 260 2 1884 223 35 68 chrX 8765665 8766270 -168207870 - L1ME1 LINE L1 -120 6046 5462 1664 197 14 0 chrX 8766321 8766605 -168207535 - AluJb SINE Alu -18 294 7 841 167 0 7 chrX 8766609 8766747 -168207393 - AluJo SINE Alu -175 137 1 512 190 51 118 chrX 8767416 8767611 -168206529 + L1M3 LINE L1 5449 5630 -550 300 140 0 0 chrX 8768346 8768396 -168205744 - 5S rRNA rRNA -70 51 2 253 200 0 0 chrX 8769390 8769440 -168204700 - 5S rRNA rRNA -70 51 2 277 180 0 0 chrX 8770321 8770371 -168203769 - 5S rRNA rRNA -70 51 2 289 180 0 0 chrX 8771253 8771303 -168202837 - 5S rRNA rRNA -70 51 2 268 200 0 0 chrX 8772183 8772233 -168201907 - 5S rRNA rRNA -70 51 2 300 140 0 0 chrX 8773115 8773165 -168200975 - 5S rRNA rRNA -70 51 2 284 198 0 172 chrX 8774093 8774209 -168199931 - 5S rRNA rRNA -24 97 2 309 180 0 0 chrX 8776079 8776129 -168198011 + 5S rRNA rRNA 2 51 -70 330 181 0 172 chrX 8777011 8777127 -168197013 + 5S rRNA rRNA 2 97 -24 321 160 0 0 chrX 8777942 8777992 -168196148 + 5S rRNA rRNA 2 51 -70 287 167 0 33 chrX 8779210 8779270 -168194870 - AluJo SINE Alu -159 143 86 1293 151 9 9 chrX 8779272 8779490 -168194650 - AluJo SINE Alu -94 218 1 2399 70 0 0 chrX 8779876 8780177 -168193963 - AluY SINE Alu -10 301 1 506 255 27 34 chrX 8781619 8781768 -168192372 + MIR SINE MIR 103 250 -12 232 292 0 14 chrX 8781882 8781954 -168192186 + GA-rich Low_complexity Low_complexity 1 71 0 836 168 0 7 chrX 8782112 8782255 -168191885 - FLAM_C SINE Alu 0 143 2 792 250 70 4 chrX 8782778 8783006 -168191134 + MER33 DNA MER1_type 35 277 -47 2508 51 0 3 chrX 8783014 8783326 -168190814 + AluY SINE Alu 1 311 0 1245 171 89 37 chrX 8783337 8783606 -168190534 + AluJb SINE Alu 1 283 -29 809 302 127 18 chrX 8783855 8784345 -168189795 + HAL1 LINE L1 1614 2156 -351 1656 189 3 0 chrX 8784349 8784646 -168189494 + AluJb SINE Alu 1 298 -14 1958 95 7 7 chrX 8784881 8785165 -168188975 + AluSq SINE Alu 19 302 -11 2227 64 3 32 chrX 8785238 8785550 -168188590 + AluY SINE Alu 1 303 -8 448 204 49 49 chrX 8786058 8786200 -168187940 - LTR33 LTR ERVL 0 521 380 436 226 13 0 chrX 8786268 8786360 -168187780 + MLT1I LTR MaLR 60 154 -266 2523 55 0 0 chrX 8786360 8786670 -168187470 - AluY SINE Alu -1 310 1 419 189 0 150 chrX 8787240 8787277 -168186863 + MER5B DNA MER1_type 30 71 -107 2172 77 14 7 chrX 8787277 8787574 -168186566 + AluSq SINE Alu 1 299 -14 419 189 0 150 chrX 8787574 8787663 -168186477 + MER5B DNA MER1_type 71 137 -41 1632 173 15 0 chrX 8787936 8788207 -168185933 + AluJo SINE Alu 1 275 -37 180 77 0 0 chrX 8788209 8788235 -168185905 + (TC)n Simple_repeat Simple_repeat 2 27 0 533 42 14 0 chrX 8788238 8788310 -168185830 + (TCTA)n Simple_repeat Simple_repeat 4 76 0 27 0 0 0 chrX 8789683 8789710 -168184430 + AT_rich Low_complexity Low_complexity 1 27 0 358 307 48 96 chrX 8790294 8790697 -168183443 - L1MEc LINE L1 -2792 3423 2118 768 154 0 15 chrX 8790886 8791016 -168183124 + AluJo SINE Alu 12 139 -173 333 188 0 75 chrX 8791639 8791719 -168182421 - 5S rRNA rRNA -46 75 2 260 228 0 76 chrX 8792684 8792763 -168181377 - 5S rRNA rRNA -46 75 3 328 181 0 172 chrX 8793693 8793809 -168180331 - 5S rRNA rRNA -24 97 2 333 188 0 75 chrX 8794661 8794741 -168179399 - 5S rRNA rRNA -46 75 2 329 179 0 170 chrX 8795679 8795785 -168178355 - 5S rRNA rRNA -32 89 2 333 188 0 75 chrX 8796637 8796717 -168177423 - 5S rRNA rRNA -46 75 2 284 198 0 172 chrX 8797644 8797760 -168176380 - 5S rRNA rRNA -24 97 2 300 180 0 0 chrX 8798642 8798692 -168175448 - 5S rRNA rRNA -70 51 2 333 188 0 75 chrX 8799544 8799624 -168174516 - 5S rRNA rRNA -46 75 2 321 160 0 0 chrX 8800618 8800668 -168173472 - 5S rRNA rRNA -70 51 2 333 188 0 75 chrX 8801520 8801600 -168172540 - 5S rRNA rRNA -46 75 2 321 160 0 0 chrX 8802594 8802644 -168171496 - 5S rRNA rRNA -70 51 2 302 143 9 171 chrX 8803470 8803575 -168170565 - 5S rRNA rRNA -32 89 2 338 247 0 0 chrX 8803745 8803822 -168170318 - 5S rRNA rRNA -38 83 7 24 0 0 0 chrX 8805265 8805289 -168168851 + AT_rich Low_complexity Low_complexity 1 24 0 1709 141 3 50 chrX 8805289 8805457 -168168683 - 7SLRNA srpRNA srpRNA -16 304 130 360 0 0 0 chrX 8805457 8805497 -168168643 + (TCTA)n Simple_repeat Simple_repeat 4 43 0 1996 125 0 0 chrX 8805498 8805795 -168168345 - AluSq SINE Alu -11 302 6 1709 141 3 50 chrX 8805795 8805923 -168168217 - 7SLRNA srpRNA srpRNA -189 131 20 561 294 61 5 chrX 8806063 8806277 -168167863 - L1MC/D LINE L1 -2040 5768 5543 1804 165 3 0 chrX 8806581 8806890 -168167250 - AluJo SINE Alu -2 310 1 1992 115 0 0 chrX 8806907 8807186 -168166954 - AluSq SINE Alu -28 285 7 279 270 0 0 chrX 8807287 8807350 -168166790 - MLT1K LTR MaLR 0 588 526 814 313 23 32 chrX 8807457 8807802 -168166338 - MLT1L LTR MaLR -149 466 125 1173 181 191 61 chrX 8807983 8808391 -168165749 - MLT1C LTR MaLR -1 466 6 224 329 161 7 chrX 8808398 8808535 -168165605 - MIR SINE MIR -102 160 3 231 191 0 0 chrX 8808608 8808650 -168165490 - L2 LINE L2 -4 3309 3268 2326 82 3 3 chrX 8808654 8808960 -168165180 - AluY SINE Alu -3 308 3 261 109 0 0 chrX 8808961 8809007 -168165133 + (TTCC)n Simple_repeat Simple_repeat 1 46 0 2195 87 0 0 chrX 8809007 8809295 -168164845 - AluSg1 SINE Alu -21 288 1 2347 35 3 0 chrX 8809617 8809924 -168164216 + AluY SINE Alu 1 308 0 1784 113 6 73 chrX 8810109 8810437 -168163703 + AluJo SINE Alu 1 306 -6 198 71 0 0 chrX 8810777 8810805 -168163335 + (TC)n Simple_repeat Simple_repeat 1 28 0 2346 213 82 53 chrX 8811050 8811467 -168162673 + L1MD2 LINE L1 5620 6068 -291 2199 75 0 0 chrX 8811467 8811747 -168162393 - AluSx SINE Alu -6 306 27 2346 213 82 53 chrX 8811747 8812046 -168162094 + L1MD2 LINE L1 6068 6357 -2 1987 114 3 10 chrX 8812135 8812433 -168161707 + AluSq SINE Alu 1 296 -17 1600 163 48 3 chrX 8812551 8812845 -168161295 + AluJb SINE Alu 1 307 -5 1858 145 3 13 chrX 8813518 8813821 -168160319 + AluJo SINE Alu 7 306 -6 1239 197 5 5 chrX 8813852 8814075 -168160065 + MER58A DNA MER1_type 2 224 0 1557 147 9 69 chrX 8814224 8814400 -168159740 - AluJo SINE Alu -12 300 150 2294 79 0 0 chrX 8814400 8814690 -168159450 - AluSx SINE Alu -22 290 1 1557 147 9 69 chrX 8814690 8814832 -168159308 - AluJo SINE Alu -162 150 1 271 343 133 14 chrX 8814921 8815131 -168159009 + MIR SINE MIR 2 236 -26 1014 159 0 0 chrX 8815478 8815641 -168158499 - AluJb SINE Alu -12 300 138 3051 188 46 2 chrX 8815810 8816416 -168157724 - L1MB5 LINE L1 -1 6173 5541 1671 177 81 0 chrX 8816553 8816863 -168157277 - MER7A DNA MER2_type 0 346 14 554 286 108 52 chrX 8816955 8817186 -168156954 + L2 LINE L2 3029 3272 0 631 130 0 0 chrX 8817497 8817589 -168156551 + AluJ/FLAM SINE Alu 1 92 -220 1997 248 72 19 chrX 8817706 8818355 -168155785 + L1ME2 LINE L1 5426 6109 -55 812 196 0 0 chrX 8818357 8818490 -168155650 - AluJb SINE Alu -178 134 2 26 0 0 49 chrX 8818540 8818555 -168155585 + AT_rich Low_complexity Low_complexity 1 15 -24 2246 107 0 0 chrX 8818555 8818864 -168155276 - AluSx SINE Alu -3 309 1 26 0 0 49 chrX 8818864 8818889 -168155251 + AT_rich Low_complexity Low_complexity 15 39 0 649 269 12 6 chrX 8818975 8819135 -168155005 - MLT1H LTR MaLR -3 546 386 1704 219 28 0 chrX 8820666 8821022 -168153118 - LTR16C LTR ERVL 0 491 126 286 293 13 0 chrX 8821238 8821313 -168152827 - MER45C DNA AcHobo 0 953 878 249 197 13 145 chrX 8821319 8821395 -168152745 - MER45C DNA AcHobo -441 512 447 1149 198 116 79 chrX 8821558 8821772 -168152368 - MER58B DNA MER1_type -2079 341 109 1802 141 3 14 chrX 8821772 8822063 -168152077 + AluJb SINE Alu 1 288 -24 1149 198 116 79 chrX 8822063 8822177 -168151963 - MER58B DNA MER1_type -2311 109 1 1118 254 58 96 chrX 8822667 8822829 -168151311 - MLT1J LTR MaLR -12 499 332 2492 35 0 6 chrX 8822829 8823141 -168150999 - AluY SINE Alu -1 310 1 1118 254 58 96 chrX 8823141 8823268 -168150872 - MLT1J LTR MaLR -179 332 202 1572 215 43 27 chrX 8823268 8823636 -168150504 + MLT1A2 LTR MaLR 1 374 0 1118 254 58 96 chrX 8823636 8823808 -168150332 - MLT1J LTR MaLR -309 202 55 962 204 9 23 chrX 8823808 8824028 -168150112 - MER20 DNA MER1_type -2 217 1 1118 254 58 96 chrX 8824028 8824063 -168150077 - MLT1J LTR MaLR -456 55 20 581 312 46 9 chrX 8824144 8824362 -168149778 + LTR67 LTR ERVL 332 557 0 2264 82 3 17 chrX 8825536 8825830 -168148310 - AluSc SINE Alu -14 295 6 412 233 338 0 chrX 8825844 8825977 -168148163 - MER5A DNA MER1_type -11 178 1 1514 160 23 105 chrX 8826135 8826479 -168147661 - AluYb8 SINE Alu -2 316 1 323 288 0 0 chrX 8826891 8826964 -168147176 + L2 LINE L2 3196 3268 -4 952 203 18 53 chrX 8827000 8827227 -168146913 + MER20 DNA MER1_type 1 219 0 350 253 38 0 chrX 8827976 8828055 -168146085 - MIR SINE MIR -33 229 148 348 313 54 27 chrX 8828545 8828707 -168145433 - MIR SINE MIR -38 170 1 1512 207 105 41 chrX 8828775 8828833 -168145307 + MLT1F LTR MaLR 1 54 -488 1588 198 58 33 chrX 8828833 8829197 -168144943 + MLT1A2 LTR MaLR 2 374 0 1512 207 105 41 chrX 8829197 8829622 -168144518 + MLT1F LTR MaLR 54 515 -27 6629 83 11 2 chrX 8829623 8830692 -168143448 + L1PA14 LINE L1 5079 6160 -1 2829 109 26 9 chrX 8830999 8831420 -168142720 + MSTA LTR MaLR 1 428 0 872 173 0 0 chrX 8831931 8832070 -168142070 - AluJo SINE Alu -173 139 1 182 321 58 29 chrX 8832858 8832995 -168141145 - MIR SINE MIR -48 214 74 1753 163 33 3 chrX 8833010 8833310 -168140830 + AluJb SINE Alu 1 309 -3 190 393 0 0 chrX 8833526 8833582 -168140558 + L2 LINE L2 2998 3053 -219 478 246 99 47 chrX 8833754 8833925 -168140215 - L1ME3 LINE L1 -14 6148 5969 195 401 39 6 chrX 8834434 8834616 -168139524 + L2 LINE L2 2827 3014 -258 22 0 0 0 chrX 8834843 8834865 -168139275 + AT_rich Low_complexity Low_complexity 1 22 0 1956 148 7 13 chrX 8835082 8835249 -168138891 - AluSx SINE Alu -11 301 135 2221 118 0 0 chrX 8835249 8835633 -168138507 - AluSx SINE Alu 0 312 1 1956 148 7 13 chrX 8835633 8835768 -168138372 - AluSx SINE Alu -177 135 1 896 167 0 7 chrX 8835771 8835915 -168138225 - FLAM_C SINE Alu 0 143 1 219 257 69 109 chrX 8835990 8836091 -168138049 + L2 LINE L2 3160 3256 -16 2168 132 3 3 chrX 8836118 8836428 -168137712 + AluSx SINE Alu 1 310 -2 900 237 23 5 chrX 8837813 8838028 -168136112 - MER20 DNA MER1_type 0 219 1 1676 165 4 0 chrX 8838545 8838818 -168135322 - AluJo SINE Alu -1 311 38 2751 182 72 30 chrX 8839233 8839832 -168134308 - MLT1E3 LTR MaLR 0 624 1 375 350 36 0 chrX 8839995 8840135 -168134005 - L2 LINE L2 -5 3308 3164 1721 149 7 18 chrX 8840138 8840419 -168133721 - AluJo SINE Alu -11 301 24 201 214 48 0 chrX 8840554 8840596 -168133544 + (CCTA)n Simple_repeat Simple_repeat 3 46 0 2455 150 55 9 chrX 8840720 8841172 -168132968 - LTR29 LTR ERV1 -13 609 137 309 274 0 0 chrX 8841185 8841269 -168132871 - MER34 LTR ERV1 -458 84 1 1224 268 61 65 chrX 8841738 8842057 -168132083 + L1MC4 LINE L1 7243 7562 -480 2572 173 19 8 chrX 8842057 8842537 -168131603 + L1MB3 LINE L1 5689 6173 -10 1813 164 7 23 chrX 8842539 8842849 -168131291 - AluJo SINE Alu -7 305 1 1224 268 61 65 chrX 8842849 8842940 -168131200 + L1MC4 LINE L1 7563 7653 -389 2225 120 0 0 chrX 8842940 8843239 -168130901 + AluSx SINE Alu 1 299 -13 1224 268 61 65 chrX 8843239 8843484 -168130656 + L1MC4 LINE L1 7653 7899 -143 2384 97 0 0 chrX 8843601 8843899 -168130241 - AluSx SINE Alu -14 298 1 2185 126 0 0 chrX 8844340 8844634 -168129506 + AluJo SINE Alu 1 294 -18 635 336 63 41 chrX 8844638 8845151 -168128989 + L2 LINE L2 2748 3270 -2 1567 148 31 68 chrX 8845440 8845764 -168128376 - AluJo SINE Alu 0 312 1 2072 145 93 25 chrX 8845788 8846187 -168127953 - MSTB LTR MaLR 0 426 1 2501 93 0 0 chrX 8846244 8846554 -168127586 - AluSx SINE Alu -2 310 1 1805 147 0 64 chrX 8846965 8847277 -168126863 - AluJb SINE Alu -12 300 9 899 148 0 37 chrX 8847421 8847583 -168126557 + MER20 DNA MER1_type 27 182 -37 1764 104 0 0 chrX 8847583 8847803 -168126337 + AluSg/x SINE Alu 66 285 -27 369 0 0 0 chrX 8847803 8847844 -168126296 + (CA)n Simple_repeat Simple_repeat 2 42 0 21 0 0 0 chrX 8848147 8848168 -168125972 + AT_rich Low_complexity Low_complexity 1 21 0 1157 134 23 14 chrX 8848649 8848865 -168125275 - MER46B DNA MER2_type 0 236 19 1812 165 0 14 chrX 8848878 8849169 -168124971 - AluJo SINE Alu -25 287 1 1063 172 0 0 chrX 8849169 8849349 -168124791 - MER46B DNA MER2_type -181 55 1 1018 194 0 0 chrX 8849351 8849521 -168124619 - FRAM SINE Alu -7 169 1 2321 118 0 0 chrX 8850249 8850553 -168123587 - AluJb SINE Alu -8 304 1 186 133 0 0 chrX 8850908 8850938 -168123202 + (TTCC)n Simple_repeat Simple_repeat 3 32 0 325 301 44 0 chrX 8851207 8851343 -168122797 - L1ME3A LINE L1 -27 6143 6002 352 294 162 15 chrX 8851744 8851880 -168122260 - MIR SINE MIR -67 195 40 2317 241 14 11 chrX 8852131 8852687 -168121453 + MER82 DNA MER2_type 3 560 -93 2234 112 0 0 chrX 8853483 8853787 -168120353 - AluSx SINE Alu -8 304 1 2453 99 0 3 chrX 8853907 8854220 -168119920 - AluSx SINE Alu 0 312 1 21 36 0 0 chrX 8855058 8855086 -168119054 + AT_rich Low_complexity Low_complexity 1 28 0 2567 69 3 0 chrX 8855912 8856217 -168117923 + AluSp SINE Alu 1 306 -7 180 290 191 25 chrX 8856246 8856408 -168117732 - MER5A DNA MER1_type 0 189 1 563 226 161 6 chrX 8856985 8857153 -168116987 + MER45C DNA AcHobo 74 267 -686 * 828 215 126 64 chrX 8857134 8857329 -168116811 + MER45C DNA AcHobo 606 830 -751 939 207 0 0 chrX 8857329 8857493 -168116647 + FRAM SINE Alu 1 164 -2 828 215 126 64 chrX 8857493 8857623 -168116517 + MER45C DNA AcHobo 830 951 -2 1113 140 48 34 chrX 8858477 8858684 -168115456 + MER20 DNA MER1_type 1 210 -9 510 325 0 0 chrX 8858980 8859131 -168115009 + MER5B DNA MER1_type 26 176 -2 1198 131 0 22 chrX 8859488 8859671 -168114469 - AluJ SINE Alu 0 312 134 2086 124 3 16 chrX 8859671 8859978 -168114162 - AluSx SINE Alu -9 303 1 855 249 9 0 chrX 8860010 8860223 -168113917 - MER20 DNA MER1_type -4 215 1 470 256 29 70 chrX 8860225 8860467 -168113673 - MER112 DNA MER1_type 0 260 29 333 229 156 0 chrX 8860593 8860689 -168113451 - L1MCa LINE L1 -4336 2090 1980 2161 130 0 0 chrX 8860690 8860989 -168113151 - AluSx SINE Alu -12 300 2 748 186 0 8 chrX 8861336 8861465 -168112675 - AluJ SINE Alu -174 128 1 2175 176 55 31 chrX 8861513 8861663 -168112477 - L1MB7 LINE L1 -16 6168 6023 2002 164 3 0 chrX 8861663 8861974 -168112166 + AluJb SINE Alu 1 312 0 2175 176 55 31 chrX 8861974 8862333 -168111807 - L1MB7 LINE L1 -161 6023 5647 1918 111 48 24 chrX 8862755 8863044 -168111096 + AluSc SINE Alu 1 296 -13 2292 119 0 0 chrX 8863054 8863356 -168110784 + AluSx SINE Alu 1 302 -10 1007 151 0 0 chrX 8863608 8863754 -168110386 - AluJb SINE Alu 0 312 167 356 296 17 34 chrX 8864033 8864212 -168109928 + L1ME4a LINE L1 5754 5929 -192 29 28 0 0 chrX 8864967 8865003 -168109137 + GC_rich Low_complexity Low_complexity 1 36 0 270 81 0 0 chrX 8865092 8865129 -168109011 + (GGGGA)n Simple_repeat Simple_repeat 1 37 0 374 219 13 32 chrX 8865233 8865558 -168108582 + G-rich Low_complexity Low_complexity 1 318 0 224 261 14 14 chrX 8865529 8865667 -168108473 + GA-rich Low_complexity Low_complexity 4 141 0 * 1494 189 105 6 chrX 8866865 8867199 -168106941 - MLT1B LTR MaLR -1 389 23 2018 29 4 12 chrX 8868225 8868465 -168105675 - AluY SINE Alu -1 310 73 366 294 144 76 chrX 8868952 8869306 -168104834 + MLT1K LTR MaLR 136 513 -75 869 95 20 7 chrX 8869309 8869457 -168104683 + (TTTC)n Simple_repeat Simple_repeat 3 152 0 2355 88 13 0 chrX 8869555 8869860 -168104280 + AluSp SINE Alu 1 309 -4 189 0 0 0 chrX 8869873 8869894 -168104246 + (TA)n Simple_repeat Simple_repeat 1 21 0 384 288 65 7 chrX 8870189 8870342 -168103798 - L1ME3A LINE L1 -238 5932 5771 226 372 155 17 chrX 8870451 8870857 -168103283 + L2 LINE L2 1107 1568 -1746 313 319 22 44 chrX 8870980 8871115 -168103025 + L2 LINE L2 2596 2727 -587 1596 196 37 64 chrX 8871115 8871570 -168102570 - MLT1C LTR MaLR 0 467 25 234 307 26 44 chrX 8871580 8871694 -168102446 + L2 LINE L2 2712 2823 -491 611 91 0 0 chrX 8872490 8872578 -168101562 - L1MB4 LINE L1 0 6180 6093 2067 144 0 0 chrX 8872664 8872962 -168101178 + AluSx SINE Alu 1 298 -14 1037 171 12 0 chrX 8873011 8873175 -168100965 - AluJb SINE Alu -11 301 136 1927 180 0 0 chrX 8874338 8874643 -168099497 - AluSx SINE Alu -7 305 1 2288 131 0 0 chrX 8874918 8875230 -168098910 - AluSx SINE Alu 0 312 1 387 240 0 10 chrX 8875456 8875552 -168098588 + MER53 DNA DNA 23 117 -72 913 204 63 12 chrX 8875695 8875950 -168098190 + MER33 DNA MER1_type 57 324 0 652 246 138 0 chrX 8875949 8876144 -168097996 - MER58A DNA MER1_type -2 222 1 * 1015 170 0 0 chrX 8876536 8876701 -168097439 + FRAM SINE Alu 1 165 -1 842 157 0 0 chrX 8876868 8876989 -168097151 - FLAM_C SINE Alu -22 121 1 181 280 75 11 chrX 8877638 8877731 -168096409 - MIR SINE MIR 0 262 164 534 264 8 0 chrX 8878071 8878200 -168095940 + L1PB4 LINE L1 5951 6080 -76 468 270 137 63 chrX 8878549 8878711 -168095429 - L1MC4 LINE L1 -340 7702 7553 201 39 0 0 chrX 8878711 8878737 -168095403 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 2007 125 4 0 chrX 8878737 8879016 -168095124 - AluJb SINE Alu -29 283 4 468 270 137 63 chrX 8879016 8879545 -168094595 - L1MC4 LINE L1 -488 7554 6959 300 53 0 0 chrX 8879609 8879647 -168094493 + (CA)n Simple_repeat Simple_repeat 2 39 0 232 269 32 11 chrX 8880047 8880140 -168094000 + (TG)n Simple_repeat Simple_repeat 2 96 0 1892 147 98 0 chrX 8880445 8880772 -168093368 - MLT1A1 LTR MaLR -4 361 3 227 213 131 0 chrX 8881509 8881570 -168092570 - MLT1I LTR MaLR 0 409 341 234 224 0 0 chrX 8881697 8881746 -168092394 - MLT1I LTR MaLR -276 133 85 180 0 0 0 chrX 8882080 8882100 -168092040 + (A)n Simple_repeat Simple_repeat 1 20 0 2352 109 0 0 chrX 8882102 8882413 -168091727 + AluSx SINE Alu 1 311 -1 307 160 0 0 chrX 8882775 8882825 -168091315 - MER58 DNA MER1_type -118 223 174 375 244 0 0 chrX 8883046 8883132 -168091008 - L1MC4a LINE L1 -251 7557 7472 2265 92 0 0 chrX 8883138 8883420 -168090720 + AluSx SINE Alu 1 282 -30 2390 75 0 31 chrX 8883422 8883740 -168090400 + AluY SINE Alu 1 308 -3 1714 148 40 7 chrX 8884637 8884935 -168089205 + AluJb SINE Alu 1 308 -4 2245 93 3 3 chrX 8885141 8885430 -168088710 - AluSx SINE Alu -23 289 1 2358 93 3 0 chrX 8885954 8886264 -168087876 - AluSx SINE Alu -1 311 1 615 187 0 19 chrX 8886743 8886850 -168087290 - MER44D DNA MER2_type -1 604 628 25 21 0 43 chrX 8886850 8886878 -168087262 + AT_rich Low_complexity Low_complexity 1 28 -17 2201 103 3 3 chrX 8886878 8887169 -168086971 + AluSx SINE Alu 1 291 -21 25 21 0 43 chrX 8887169 8887187 -168086953 + AT_rich Low_complexity Low_complexity 28 45 0 694 193 0 0 chrX 8887190 8887309 -168086831 - FLAM_C SINE Alu -12 121 3 3136 170 116 10 chrX 8887314 8887892 -168086248 - MER44D DNA MER2_type -66 639 1 815 204 13 13 chrX 8887926 8888083 -168086057 - FRAM SINE Alu -19 157 1 540 263 34 22 chrX 8888261 8888440 -168085700 + MER58A DNA MER1_type 26 206 -18 335 283 53 62 chrX 8888959 8889185 -168084955 + MLT1K LTR MaLR 357 580 -8 1241 112 0 12 chrX 8889910 8890079 -168084061 - AluJb SINE Alu -145 167 1 344 285 74 20 chrX 8890549 8890832 -168083308 - Zaphod DNA AcHobo 0 4031 388 320 0 0 24 chrX 8891050 8891091 -168083049 + (GA)n Simple_repeat Simple_repeat 2 41 0 2579 68 3 0 chrX 8891898 8892207 -168081933 + AluSp SINE Alu 1 310 -3 236 138 103 35 chrX 8892575 8892633 -168081507 + MLT1F1 LTR MaLR 477 538 -29 2668 39 0 7 chrX 8892729 8893035 -168081105 + AluY SINE Alu 1 304 -7 1990 109 0 81 chrX 8893060 8893380 -168080760 + AluSx SINE Alu 19 312 0 1813 169 0 42 chrX 8893590 8893897 -168080243 - AluJb SINE Alu -18 294 1 677 260 64 20 chrX 8894078 8894328 -168079812 - L1ME3A LINE L1 -278 5892 5632 287 186 17 0 chrX 8894340 8894399 -168079741 - L1ME3A LINE L1 -594 5568 5509 791 126 0 53 chrX 8894675 8894865 -168079275 + (TCCC)n Simple_repeat Simple_repeat 1 180 0 1543 180 8 8 chrX 8894895 8895162 -168078978 - AluJo SINE Alu -45 267 1 789 118 41 145 chrX 8895540 8895761 -168078379 - MER3 DNA MER1_type -7 202 5 283 405 8 0 chrX 8896526 8896657 -168077483 - L2 LINE L2 0 3272 3141 2798 210 29 0 chrX 8896863 8897407 -168076733 - MLT1F1 LTR MaLR -2 565 6 201 291 13 25 chrX 8897429 8897508 -168076632 + MIR SINE MIR 77 154 -108 965 168 0 0 chrX 8897513 8897668 -168076472 + FRAM SINE Alu 1 155 -21 1841 143 59 3 chrX 8897808 8898095 -168076045 + AluJb SINE Alu 1 303 -9 1927 140 6 32 chrX 8898229 8898544 -168075596 - AluSx SINE Alu -3 309 3 2321 65 0 14 chrX 8899773 8900064 -168074076 + AluY SINE Alu 12 298 -13 274 336 17 26 chrX 8900293 8900409 -168073731 + MIR3 SINE MIR 88 202 -6 267 54 0 0 chrX 8900848 8900885 -168073255 + (TG)n Simple_repeat Simple_repeat 2 38 0 1762 132 28 60 chrX 8901068 8901386 -168072754 + AluJb SINE Alu 1 308 -4 581 292 46 25 chrX 8901838 8902078 -168072062 + MIR SINE MIR 4 248 -14 631 112 11 0 chrX 8902703 8902792 -168071348 + AluJb SINE Alu 208 297 -15 1987 139 10 10 chrX 8902985 8903165 -168070975 - AluSx SINE Alu 0 463 284 240 35 0 0 chrX 8903165 8903194 -168070946 + (TTCTC)n Simple_repeat Simple_repeat 2 30 0 1987 139 10 10 chrX 8903194 8903476 -168070664 - AluSx SINE Alu -178 285 1 1830 209 70 27 chrX 8903901 8904418 -168069722 - MLT1F LTR MaLR 0 542 4 25 0 0 0 chrX 8905547 8905572 -168068568 + AT_rich Low_complexity Low_complexity 1 25 0 1072 234 38 62 chrX 8906483 8906804 -168067336 + L1MD2 LINE L1 5580 5885 -289 400 307 24 54 chrX 8906804 8906970 -168067170 - LTR16C LTR ERVL -277 214 54 443 252 56 0 chrX 8907025 8907168 -168066972 + HAL1 LINE L1 1123 1273 -1234 2037 106 10 36 chrX 8907378 8907681 -168066459 + AluSx SINE Alu 1 295 -17 1894 159 3 34 chrX 8907712 8908032 -168066108 + AluJb SINE Alu 3 312 0 1778 163 10 0 chrX 8908272 8908567 -168065573 - AluJo SINE Alu -14 298 1 197 336 37 37 chrX 8909585 8909692 -168064448 - MIR SINE MIR -136 126 20 215 156 0 22 chrX 8909795 8909840 -168064300 - MIR3 SINE MIR -54 154 111 1772 150 52 0 chrX 8909885 8910197 -168063943 + AluJb SINE Alu 1 326 0 1231 207 29 42 chrX 8910211 8910520 -168063620 - MER33 DNA MER1_type -3 321 17 2266 155 25 59 chrX 8911174 8911321 -168062819 - Tigger2a DNA MER2_type -2274 434 284 2059 133 0 7 chrX 8911321 8911623 -168062517 + AluJb SINE Alu 3 302 -10 2266 155 25 59 chrX 8911623 8911919 -168062221 - Tigger2a DNA MER2_type -2424 284 6 572 158 9 0 chrX 8912108 8912222 -168061918 + GA-rich Low_complexity Low_complexity 3 117 0 1750 172 30 0 chrX 8912537 8912872 -168061268 - AluJb SINE Alu 0 344 1 769 188 0 0 chrX 8912879 8913012 -168061128 - AluJb SINE Alu -178 134 2 331 273 56 28 chrX 8915350 8915493 -168058647 + (CATG)n Simple_repeat Simple_repeat 1 147 0 316 369 20 7 chrX 8915455 8915655 -168058485 + (CGTG)n Simple_repeat Simple_repeat 1 202 0 * 276 278 0 33 chrX 8916150 8916240 -168057900 + CT-rich Low_complexity Low_complexity 4 90 0 1672 174 3 17 chrX 8916427 8916721 -168057419 - AluJo SINE Alu -22 290 1 487 208 57 78 chrX 8917255 8917396 -168056744 + MER5A DNA MER1_type 2 139 -50 2122 145 0 0 chrX 8917396 8917706 -168056434 + AluJo SINE Alu 1 310 -2 487 208 57 78 chrX 8917706 8917756 -168056384 + MER5A DNA MER1_type 139 189 0 22 0 0 0 chrX 8919104 8919126 -168055014 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chrX 8919524 8919549 -168054591 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chrX 8920456 8920484 -168053656 + AT_rich Low_complexity Low_complexity 1 28 0 2060 138 3 0 chrX 8920484 8920773 -168053367 - AluJo SINE Alu -22 290 1 387 283 10 0 chrX 8920778 8920877 -168053263 - MER58A DNA MER1_type -124 100 1 616 299 22 9 chrX 8921272 8921496 -168052644 + MLT1J2 LTR MaLR 1 227 -223 339 237 0 13 chrX 8921616 8921692 -168052448 - Tigger5 DNA MER2_type -1 2322 2248 578 193 379 0 chrX 8921694 8921834 -168052306 - Tigger5 DNA MER2_type -2130 193 1 35 54 0 0 chrX 8922555 8922611 -168051529 + AT_rich Low_complexity Low_complexity 1 56 0 22 35 0 0 chrX 8922679 8922708 -168051432 + AT_rich Low_complexity Low_complexity 1 29 0 1168 148 23 0 chrX 8923224 8923400 -168050740 - AluJ SINE Alu 0 312 133 444 89 38 0 chrX 8923400 8923479 -168050661 + (TA)n Simple_repeat Simple_repeat 2 83 0 817 176 0 0 chrX 8923479 8923604 -168050536 - AluJ SINE Alu -187 125 1 326 252 53 8 chrX 8923634 8923765 -168050375 + L2 LINE L2 2367 2503 -811 2200 120 3 7 chrX 8923900 8924201 -168049939 + AluSx SINE Alu 3 302 -10 433 241 188 0 chrX 8924610 8924743 -168049397 - MER5A DNA MER1_type -25 164 7 2541 176 12 16 chrX 8925123 8925607 -168048533 - L1MB5 LINE L1 -19 6155 5674 203 161 0 0 chrX 8926122 8926153 -168047987 + (TG)n Simple_repeat Simple_repeat 1 31 0 201 74 0 0 chrX 8926153 8926180 -168047960 + (CA)n Simple_repeat Simple_repeat 1 27 0 266 299 0 0 chrX 8927867 8927934 -168046206 + (CATATA)n Simple_repeat Simple_repeat 6 72 0 2145 127 0 0 chrX 8929393 8929718 -168044422 - AluSx SINE Alu 0 312 2 191 287 0 46 chrX 8929772 8929859 -168044281 - L2 LINE L2 -319 2953 2871 1386 185 89 15 chrX 8930289 8930614 -168043526 + MLT1C LTR MaLR 4 352 -115 978 182 0 0 chrX 8930615 8930791 -168043349 + FRAM SINE Alu 1 176 0 739 172 0 22 chrX 8930837 8930971 -168043169 + MLT1C LTR MaLR 337 467 0 1580 149 29 40 chrX 8931317 8931592 -168042548 - AluJo SINE Alu -36 276 5 189 74 0 0 chrX 8932782 8932809 -168041331 + (TC)n Simple_repeat Simple_repeat 2 28 0 2032 102 18 7 chrX 8932809 8933083 -168041057 - AluSg SINE Alu -32 278 2 200 179 27 54 chrX 8933545 8933657 -168040483 + CT-rich Low_complexity Low_complexity 1 109 0 420 145 62 33 chrX 8933673 8934164 -168039976 + CT-rich Low_complexity Low_complexity 1 505 0 716 267 52 9 chrX 8934228 8934438 -168039702 - MER58A DNA MER1_type -5 219 1 267 226 50 0 chrX 8934492 8934582 -168039558 - MER5A DNA MER1_type -90 99 4 1806 136 15 0 chrX 8936291 8936564 -168037576 + L1PA15 LINE L1 5889 6165 0 845 90 14 14 chrX 8936676 8936820 -168037320 + (TTTC)n Simple_repeat Simple_repeat 1 144 0 2279 107 3 0 chrX 8936824 8937122 -168037018 - AluSx SINE Alu -13 299 1 422 288 20 0 chrX 8937504 8937650 -168036490 + MER104 DNA Tc2 6 154 -26 338 178 55 0 chrX 8937844 8937917 -168036223 + MER5A DNA MER1_type 3 79 -110 209 295 189 18 chrX 8937988 8938205 -168035935 + L2 LINE L2 2228 2481 -833 466 291 179 22 chrX 8938712 8939031 -168035109 + L2 LINE L2 2897 3265 -7 24 32 0 0 chrX 8939181 8939212 -168034928 + AT_rich Low_complexity Low_complexity 1 31 0 773 154 32 0 chrX 8939217 8939340 -168034800 - FLAM_C SINE Alu -5 128 2 702 126 0 0 chrX 8939501 8939604 -168034536 - AluSg/x SINE Alu 0 310 208 864 201 34 0 chrX 8939849 8940028 -168034112 + MER20 DNA MER1_type 34 218 -1 1719 174 0 14 chrX 8940161 8940454 -168033686 - AluJb SINE Alu -12 300 12 2289 115 0 3 chrX 8941021 8941334 -168032806 + AluSx SINE Alu 1 312 0 1597 141 23 19 chrX 8941344 8941607 -168032533 + AluJo SINE Alu 43 306 -6 738 303 71 29 chrX 8941751 8942131 -168032009 + Charlie7 DNA MER1_type 294 689 -1923 3490 206 15 48 chrX 8942268 8942625 -168031515 - L1ME1 LINE L1 -4 6162 5795 1863 153 7 17 chrX 8942625 8942920 -168031220 - AluJo SINE Alu -20 292 1 3490 206 15 48 chrX 8942920 8943410 -168030730 - L1ME1 LINE L1 -371 5795 5343 276 232 40 111 chrX 8944358 8944556 -168029584 - L2 LINE L2 -12 3301 3118 2189 66 4 4 chrX 8945745 8946016 -168028124 + AluSq SINE Alu 36 306 -7 371 280 7 53 chrX 8946215 8946365 -168027775 + LTR16B LTR ERVL 1 143 -321 2597 222 1 39 chrX 8947227 8947876 -168026264 + L1M4 LINE L1 4421 5045 -1101 936 231 15 0 chrX 8948176 8948375 -168025765 + L1MC4a LINE L1 6647 6848 -960 411 289 131 41 chrX 8949683 8949980 -168024160 + L2 LINE L2 2791 3145 -168 1382 114 274 0 chrX 8949980 8950217 -168023923 - AluSx SINE Alu 0 302 1 411 289 131 41 chrX 8950217 8950390 -168023750 + L2 LINE L2 3145 3301 -12 1821 140 7 4 chrX 8950393 8950664 -168023476 + AluJo SINE Alu 24 295 -17 446 131 9 37 chrX 8950842 8950949 -168023191 + (TCTA)n Simple_repeat Simple_repeat 1 104 0 224 264 11 55 chrX 8951311 8951402 -168022738 + CT-rich Low_complexity Low_complexity 4 90 0 200 179 0 0 chrX 8951539 8951578 -168022562 + MIR SINE MIR 116 154 -108 7081 194 53 77 chrX 8951759 8953799 -168020341 - L1MC4a LINE L1 0 7808 5817 743 256 39 62 chrX 8953857 8953896 -168020244 - L1ME3 LINE L1 0 6162 6124 1519 172 15 8 chrX 8953896 8954163 -168019977 - AluJb SINE Alu -43 269 1 743 256 39 62 chrX 8954163 8954431 -168019709 - L1ME3 LINE L1 -38 6124 5862 1258 276 131 16 chrX 8956315 8956742 -168017398 + MLT1G1 LTR MaLR 47 522 -73 252 0 0 0 chrX 8956965 8956993 -168017147 + (CA)n Simple_repeat Simple_repeat 2 29 0 2054 123 0 0 chrX 8957349 8957626 -168016514 + AluSx SINE Alu 1 277 -35 576 172 43 17 chrX 8958984 8959100 -168015040 - MER45A DNA AcHobo 0 178 60 1882 203 116 51 chrX 8959105 8959516 -168014624 - L1ME1 LINE L1 -222 5944 5482 2131 127 7 7 chrX 8959516 8959824 -168014316 - AluJb SINE Alu -4 308 1 1882 203 116 51 chrX 8959824 8959999 -168014141 - L1ME1 LINE L1 -684 5482 5320 1237 237 15 4 chrX 8959999 8960269 -168013871 + AluJo SINE Alu 38 310 -2 936 283 51 20 chrX 8960269 8960661 -168013479 - L1ME1 LINE L1 -832 5314 4911 2048 142 0 7 chrX 8960889 8961185 -168012955 + AluSx SINE Alu 1 294 -18 1728 121 118 7 chrX 8961298 8961570 -168012570 - AluJo SINE Alu -10 302 1 325 152 217 43 chrX 8962253 8962345 -168011795 - ORSL DNA AcHobo -7 268 161 22 0 0 0 chrX 8962437 8962459 -168011681 + AT_rich Low_complexity Low_complexity 1 22 0 235 259 26 17 chrX 8962459 8962575 -168011565 + (CATATA)n Simple_repeat Simple_repeat 2 118 0 * 258 274 22 17 chrX 8962512 8962691 -168011449 + (TA)n Simple_repeat Simple_repeat 1 180 0 22 0 0 0 chrX 8962695 8962717 -168011423 + AT_rich Low_complexity Low_complexity 1 22 0 212 193 46 28 chrX 8962738 8962847 -168011293 + (TATAA)n Simple_repeat Simple_repeat 2 112 0 * 240 292 26 0 chrX 8962809 8962922 -168011218 + (TA)n Simple_repeat Simple_repeat 1 116 0 1848 268 37 54 chrX 8963499 8964414 -168009726 + L1M4 LINE L1 2671 3570 -2576 992 208 120 33 chrX 8964502 8964874 -168009266 + MLT1C LTR MaLR 13 432 -35 598 253 59 15 chrX 8964881 8965083 -168009057 - MIR SINE MIR -24 238 28 295 259 0 12 chrX 8966613 8966694 -168007446 - MER5A DNA MER1_type -84 105 26 956 122 0 10 chrX 8966823 8967007 -168007133 + AluJb SINE Alu 1 258 -54 860 133 0 0 chrX 8968101 8968221 -168005919 + FRAM SINE Alu 37 156 -20 21 36 0 0 chrX 8968232 8968260 -168005880 + AT_rich Low_complexity Low_complexity 1 28 0 975 139 0 6 chrX 8968260 8968418 -168005722 - L1MA5A LINE L1 -7 6290 6134 935 114 15 0 chrX 8969024 8969155 -168004985 - FLAM_C SINE Alu 0 133 1 186 43 0 0 chrX 8969217 8969240 -168004900 + (A)n Simple_repeat Simple_repeat 1 23 0 909 204 32 16 chrX 8969649 8969835 -168004305 + MER20 DNA MER1_type 31 219 0 481 267 50 22 chrX 8969835 8970015 -168004125 - L1MC4 LINE L1 -502 7540 7356 279 0 0 0 chrX 8970132 8970163 -168003977 + (CA)n Simple_repeat Simple_repeat 1 31 0 1808 136 72 0 chrX 8970879 8971171 -168002969 + AluSx SINE Alu 1 311 0 2553 196 10 6 chrX 8971630 8972131 -168002009 - L1MD3 LINE L1 -127 7868 7366 382 296 46 33 chrX 8972463 8972615 -168001525 - MIR SINE MIR -105 157 4 241 374 108 28 chrX 8973007 8973256 -168000884 - L2 LINE L2 -28 3244 2976 252 347 31 0 chrX 8974960 8975058 -167999082 - MIR3 SINE MIR 0 208 108 1647 184 16 29 chrX 8975130 8975446 -167998694 - AluJo SINE Alu 0 312 1 411 313 16 11 chrX 8976625 8976807 -167997333 - L1ME4a LINE L1 -213 5908 5726 965 174 43 22 chrX 8977228 8977412 -167996728 + MER20 DNA MER1_type 32 219 0 868 321 25 101 chrX 8977848 8977950 -167996190 + Tigger8 DNA MER2_type 2 110 -556 4186 33 0 0 chrX 8977950 8978409 -167995731 + L1PA6 LINE L1 5683 6141 -13 868 321 25 101 chrX 8978409 8979019 -167995121 + Tigger8 DNA MER2_type 110 660 -6 23 0 0 0 chrX 8980314 8980337 -167993803 + AT_rich Low_complexity Low_complexity 1 23 0 315 305 64 35 chrX 8981094 8981235 -167992905 + MIR3 SINE MIR 37 181 -27 767 233 7 0 chrX 8981318 8981468 -167992672 + MER5A DNA MER1_type 1 151 -38 1346 152 0 15 chrX 8981468 8981715 -167992425 + AluJb SINE Alu 84 327 0 4945 129 39 14 chrX 8981716 8982478 -167991662 + MER41-int LTR ERV1 2051 2831 -3115 467 319 24 24 chrX 8982528 8982738 -167991402 - LTR16B LTR ERVL -58 406 197 956 228 29 0 chrX 8982746 8982952 -167991188 + MER20 DNA MER1_type 8 219 0 2579 66 0 0 chrX 8984166 8984470 -167989670 - AluY SINE Alu -7 304 1 201 39 0 0 chrX 8984685 8984711 -167989429 + (CA)n Simple_repeat Simple_repeat 2 27 0 2418 262 67 39 chrX 8985965 8986023 -167988117 - HAL1b LINE L1 0 1348 1293 243 0 0 0 chrX 8986023 8986050 -167988090 + (TAAAA)n Simple_repeat Simple_repeat 4 30 0 2418 262 67 39 chrX 8986050 8986978 -167987162 - HAL1b LINE L1 -55 1293 334 481 296 58 17 chrX 8987125 8987297 -167986843 - MIR SINE MIR -12 250 72 536 243 28 0 chrX 8987343 8987487 -167986653 + L1MD2 LINE L1 6212 6359 0 271 231 130 59 chrX 8987923 8988092 -167986048 - MLT1H LTR MaLR -274 275 95 530 306 45 25 chrX 8988240 8988439 -167985701 - MIR SINE MIR -14 248 46 27 0 0 0 chrX 8988479 8988506 -167985634 + AT_rich Low_complexity Low_complexity 1 27 0 551 221 0 10 chrX 8989141 8989245 -167984895 - MIR SINE MIR -154 108 6 722 217 39 78 chrX 8989283 8989513 -167984627 + MLT1E LTR MaLR 3 223 -370 484 243 5 19 chrX 8989515 8989701 -167984439 + MLT1F1 LTR MaLR 331 560 -7 198 245 0 38 chrX 8989841 8989894 -167984246 - MIR SINE MIR -133 75 25 1320 204 85 27 chrX 8990121 8990450 -167983690 - MLT1F LTR MaLR -2 540 193 3869 156 9 3 chrX 8991722 8992355 -167981785 - L1MB3 LINE L1 -3 6180 5544 2181 176 134 12 chrX 8992453 8992953 -167981187 - L1MB8 LINE L1 -15 6163 5603 1650 199 46 9 chrX 8992953 8993299 -167980841 + MLT1A1 LTR MaLR 1 359 -6 1786 174 7 20 chrX 8993305 8993654 -167980486 - L1MB8 LINE L1 -566 5608 5263 237 269 220 43 chrX 8993660 8993801 -167980339 - MIR SINE MIR -95 167 2 629 270 39 28 chrX 8994328 8994506 -167979634 - MER5A DNA MER1_type -6 183 4 1726 221 126 27 chrX 8994738 8995295 -167978845 + MLT1E3 LTR MaLR 8 619 -5 253 203 95 14 chrX 8995578 8995652 -167978488 - MLT1F LTR MaLR -574 80 1 2064 130 0 7 chrX 8996309 8996593 -167977547 - AluSx SINE Alu -30 282 1 243 302 47 9 chrX 8996870 8996976 -167977164 - L2 LINE L2 -7 3265 3156 1347 219 50 7 chrX 8997341 8997643 -167976497 + MER58B DNA MER1_type 9 323 -18 324 310 157 31 chrX 8998180 8998409 -167975731 - L2 LINE L2 0 3313 3056 2650 43 0 0 chrX 8999056 8999360 -167974780 - AluY SINE Alu -7 304 1 1564 104 0 5 chrX 8999439 8999651 -167974489 - AluSg/x SINE Alu -15 297 87 349 249 34 17 chrX 8999695 8999872 -167974268 + (TA)n Simple_repeat Simple_repeat 1 180 0 255 229 59 29 chrX 8999826 8999996 -167974144 + (TATATG)n Simple_repeat Simple_repeat 6 180 0 * 206 270 135 54 chrX 9000752 9000863 -167973277 + MER5B DNA MER1_type 30 149 -29 * 323 222 10 91 chrX 9000767 9000866 -167973274 - MER5B DNA MER1_type -61 117 27 209 132 0 53 chrX 9001474 9001512 -167972628 + L2 LINE L2 3219 3254 -18 1690 145 105 44 chrX 9001891 9002235 -167971905 + MLT1A1 LTR MaLR 1 365 0 368 269 171 16 chrX 9003097 9003342 -167970798 - L1ME4a LINE L1 -82 6039 5757 16145 112 14 17 chrX 9003489 9005879 -167968261 - Tigger1 DNA MER2_type -6 2412 30 781 236 22 6 chrX 9005996 9006174 -167967966 - MER5A DNA MER1_type 0 189 9 1745 136 16 63 chrX 9006380 9006697 -167967443 + AluJo SINE Alu 1 302 -10 2313 90 3 3 chrX 9007026 9007326 -167966814 - AluSc SINE Alu -9 300 1 190 0 32 32 chrX 9010051 9010082 -167964058 + (TA)n Simple_repeat Simple_repeat 2 32 0 195 42 0 0 chrX 9010740 9010764 -167963376 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 371 308 48 56 chrX 9012163 9012413 -167961727 - HERV16 LTR ERVL -4347 649 402 2201 72 58 3 chrX 9012815 9012980 -167961160 - AluSc SINE Alu -1 308 119 2768 60 12 0 chrX 9012980 9013314 -167960826 - L1PA7 LINE L1 0 6154 5817 2201 72 58 3 chrX 9013314 9013440 -167960700 - AluSc SINE Alu -190 119 1 1629 168 43 16 chrX 9013947 9014251 -167959889 + AluJo SINE Alu 1 312 0 315 222 32 79 chrX 9014305 9014431 -167959709 - L1ME3A LINE L1 -89 6081 5962 1165 208 99 70 chrX 9014508 9014993 -167959147 - L1MC5 LINE L1 -420 7541 7043 470 255 20 7 chrX 9015097 9015246 -167958894 + HAL1 LINE L1 2285 2435 -72 23 0 0 0 chrX 9015283 9015306 -167958834 + AT_rich Low_complexity Low_complexity 1 23 0 322 302 12 0 chrX 9015985 9016071 -167958069 + CT-rich Low_complexity Low_complexity 1 87 0 545 324 152 19 chrX 9116596 9117183 -167856957 - L3 LINE CR1 -149 1428 764 241 381 21 21 chrX 9117266 9117363 -167856777 - L3 LINE CR1 -1044 533 437 503 286 13 39 chrX 9117364 9117518 -167856622 - MIR3 SINE MIR -10 198 49 2081 173 7 31 chrX 9117668 9118089 -167856051 + L1MB7 LINE L1 5751 6161 -23 333 57 63 88 chrX 9119026 9119185 -167854955 + (CACAA)n Simple_repeat Simple_repeat 5 159 0 216 178 44 50 chrX 9119219 9119399 -167854741 + (CACAA)n Simple_repeat Simple_repeat 1 179 0 * 266 106 113 6 chrX 9119371 9119531 -167854609 + (CA)n Simple_repeat Simple_repeat 2 178 0 405 86 63 40 chrX 9119575 9119750 -167854390 + (CA)n Simple_repeat Simple_repeat 1 179 0 330 143 0 0 chrX 9119777 9119840 -167854300 + (TC)n Simple_repeat Simple_repeat 1 63 0 318 341 0 0 chrX 9120680 9120771 -167853369 - L1MC4 LINE L1 -1339 6703 6613 400 324 116 0 chrX 9121619 9121792 -167852348 + MIR SINE MIR 50 242 -20 1039 89 6 22 chrX 9121975 9122055 -167852085 + (GGAA)n Simple_repeat Simple_repeat 1 254 0 1039 89 6 22 chrX 9122055 9122234 -167851906 + (GGAA)n Simple_repeat Simple_repeat 3 178 0 249 109 0 87 chrX 9122547 9122593 -167851547 + L2 LINE L2 3272 3313 0 2307 88 3 0 chrX 9122986 9123283 -167850857 - AluSp SINE Alu -15 298 1 302 314 52 83 chrX 9123413 9123642 -167850498 + HAL1 LINE L1 2226 2447 -60 203 196 28 122 chrX 9123734 9123841 -167850299 - MER5A DNA MER1_type -86 103 7 363 250 94 16 chrX 9125530 9125658 -167848482 - MER103 DNA DNA -6 160 23 1393 155 0 0 chrX 9125673 9125899 -167848241 - AluJo SINE Alu 0 312 87 456 188 143 9 chrX 9126974 9127086 -167847054 + L1MB3 LINE L1 5739 5865 -318 5526 113 19 2 chrX 9127654 9128459 -167845681 - L1PA13 LINE L1 0 6163 5346 329 157 84 36 chrX 9229523 9229606 -167744534 - L1MB3 LINE L1 -1 6182 6096 3082 128 49 16 chrX 9229706 9230039 -167744101 + L1MB1 LINE L1 5158 5525 -809 2101 121 0 0 chrX 9230039 9230353 -167743787 + AluSx SINE Alu 1 314 0 3082 128 49 16 chrX 9230353 9230624 -167743516 + L1MB1 LINE L1 5525 5786 -548 850 125 0 0 chrX 9230628 9230748 -167743392 - AluSg/x SINE Alu -41 271 152 1651 180 23 0 chrX 9230748 9231048 -167743092 + L1MB1 LINE L1 5789 6095 -73 868 148 15 103 chrX 9231621 9231827 -167742313 - L1MD2 LINE L1 -143 6021 5826 2621 151 39 2 chrX 9231943 9232354 -167741786 - MSTB LTR MaLR 0 426 1 463 101 14 0 chrX 9232621 9232690 -167741450 - THE1B LTR MaLR 0 364 295 1840 163 0 23 chrX 9232863 9233170 -167740970 - AluJb SINE Alu -12 300 1 344 206 62 10 chrX 9233179 9233276 -167740864 + MER5C DNA MER1_type 212 313 -11 24 0 0 0 chrX 9233566 9233590 -167740550 + AT_rich Low_complexity Low_complexity 1 24 0 3348 139 27 11 chrX 9233590 9234144 -167739996 - L1PB4 LINE L1 -8 6148 5586 2137 126 3 28 chrX 9234362 9234680 -167739460 - AluJb SINE Alu -2 310 1 1192 195 0 14 chrX 9236709 9236924 -167737216 - MLT1E LTR MaLR -2 591 380 234 0 0 0 chrX 9237326 9237352 -167736788 + (A)n Simple_repeat Simple_repeat 1 26 0 216 152 22 43 chrX 9237700 9237746 -167736394 + CT-rich Low_complexity Low_complexity 1 45 0 242 277 40 30 chrX 9238051 9238152 -167735988 + Charlie7 DNA MER1_type 2511 2612 0 1079 250 101 22 chrX 9238288 9238604 -167735536 + MLT1E LTR MaLR 15 355 -238 230 224 45 0 chrX 9240163 9240230 -167733910 - L1MCa LINE L1 -4362 2064 1995 213 216 0 0 chrX 9240230 9240267 -167733873 + (CATA)n Simple_repeat Simple_repeat 2 38 0 311 269 0 43 chrX 9240268 9240361 -167733779 - L1MC4 LINE L1 -1339 6703 6615 426 176 0 0 chrX 9240370 9240455 -167733685 + (TA)n Simple_repeat Simple_repeat 1 85 0 1165 144 26 0 chrX 9240742 9240760 -167733380 - L1MB7 LINE L1 -241 5943 5926 345 322 75 13 chrX 9240760 9240987 -167733153 - L1PB2 LINE L1 -226 5925 5685 306 231 0 0 chrX 9240992 9241083 -167733057 + (TG)n Simple_repeat Simple_repeat 2 92 0 707 236 66 33 chrX 9241332 9241544 -167732596 + MER20 DNA MER1_type 1 219 0 506 160 0 40 chrX 9243769 9243869 -167730271 - L1 LINE L1 -1163 4983 4888 21 36 0 0 chrX 9244575 9244603 -167729537 + AT_rich Low_complexity Low_complexity 1 28 0 201 39 0 0 chrX 9245320 9245346 -167728794 + (CAA)n Simple_repeat Simple_repeat 2 27 0 459 0 0 0 chrX 9246679 9246730 -167727410 + (TC)n Simple_repeat Simple_repeat 1 51 0 2378 97 3 6 chrX 9247685 9247996 -167726144 + AluSx SINE Alu 3 312 0 2228 106 0 26 chrX 9248669 9248980 -167725160 + AluSx SINE Alu 1 303 -9 1350 157 0 9 chrX 9249955 9250172 -167723968 - L1PA15 LINE L1 -2 6163 5949 621 326 6 0 chrX 9250568 9250746 -167723394 + MER8 DNA MER2_type 1 179 -60 248 227 0 0 chrX 9250721 9250765 -167723375 + MER2 DNA MER2_type 282 325 -20 * 1385 176 24 0 chrX 9250943 9251193 -167722947 - Tigger3(Golem) DNA MER2_type -2 3027 2772 559 229 84 0 chrX 9251191 9251322 -167722818 - Tigger3(Golem) DNA MER2_type -2887 142 1 * 279 274 9 101 chrX 9251551 9251587 -167722553 + L2 LINE L2 3111 3149 -164 2379 219 41 2 chrX 9251587 9252071 -167722069 + MLT1D LTR MaLR 3 505 0 279 274 9 101 chrX 9252071 9252253 -167721887 + L2 LINE L2 3149 3309 -4 1955 164 0 6 chrX 9252407 9252719 -167721421 - AluJo SINE Alu -2 310 1 321 68 0 0 chrX 9253313 9253357 -167720783 + (TC)n Simple_repeat Simple_repeat 1 44 0 1297 35 0 12 chrX 9253357 9253526 -167720614 + (TTC)n Simple_repeat Simple_repeat 1 167 0 217 369 0 0 chrX 9253895 9253960 -167720180 - L2 LINE L2 -1 3271 3207 222 313 30 0 chrX 9254621 9254688 -167719452 - MIR3 SINE MIR -54 154 86 1580 177 38 13 chrX 9254734 9255050 -167719090 + MER33 DNA MER1_type 1 324 0 258 81 0 0 chrX 9255106 9255143 -167718997 + (TTCA)n Simple_repeat Simple_repeat 3 39 0 392 302 0 0 chrX 9255813 9255919 -167718221 + MER5A DNA MER1_type 4 109 -80 25 0 0 0 chrX 9256330 9256355 -167717785 + AT_rich Low_complexity Low_complexity 1 25 0 445 115 16 0 chrX 9256841 9256902 -167717238 + AluS SINE Alu 2 63 -247 219 36 0 0 chrX 9257032 9257060 -167717080 + (CCAA)n Simple_repeat Simple_repeat 4 31 0 394 239 43 34 chrX 9257065 9257182 -167716958 - MIR3 SINE MIR -79 129 12 249 139 0 0 chrX 9257758 9257801 -167716339 + (A)n Simple_repeat Simple_repeat 1 43 0 1983 99 13 40 chrX 9257802 9258104 -167716036 + L1PA16 LINE L1 5871 6164 -2 1677 172 0 7 chrX 9258693 9258984 -167715156 + AluSx SINE Alu 1 289 -23 2231 185 70 8 chrX 9259014 9259135 -167715005 - L1MA8 LINE L1 -3 6288 6176 252 0 0 0 chrX 9259135 9259163 -167714977 + (TG)n Simple_repeat Simple_repeat 1 28 0 2231 185 70 8 chrX 9259163 9259527 -167714613 - L1MA8 LINE L1 -115 6176 5773 414 311 152 7 chrX 9259823 9260093 -167714047 - L1ME3 LINE L1 -42 6120 5812 905 210 27 0 chrX 9261125 9261311 -167712829 + MER20 DNA MER1_type 29 219 0 2030 127 19 6 chrX 9261565 9261879 -167712261 + L1MA10 LINE L1 6016 6333 -1 205 333 28 0 chrX 9262616 9262688 -167711452 - L3 LINE CR1 -2 1575 1502 579 252 224 29 chrX 9262943 9263256 -167710884 - MLT1K LTR MaLR -19 569 196 2260 110 0 16 chrX 9264034 9264343 -167709797 + AluSx SINE Alu 1 304 -8 1140 196 33 9 chrX 9264673 9264887 -167709253 + MER20 DNA MER1_type 1 219 0 341 115 0 9 chrX 9265091 9265155 -167708985 - Alu SINE Alu -254 46 1 608 243 7 0 chrX 9266033 9266177 -167707963 + Tigger6a DNA MER2_type 397 541 -542 509 265 27 7 chrX 9266187 9266334 -167707806 - MER45R DNA AcHobo -1014 567 418 431 272 44 9 chrX 9266868 9266982 -167707158 - L2 LINE L2 -10 3303 3186 191 261 0 0 chrX 9267155 9267201 -167706939 + L2 LINE L2 2302 2347 -967 708 211 96 58 chrX 9267201 9267442 -167706698 + L1ME3A LINE L1 5856 6116 -54 882 221 118 11 chrX 9267445 9267707 -167706433 - L1ME3A LINE L1 -5 6165 5876 420 198 117 0 chrX 9267809 9267920 -167706220 - L1ME3A LINE L1 -585 5581 5458 876 361 102 24 chrX 9268206 9269440 -167704700 - L2 LINE L2 -210 3062 1731 411 272 53 0 chrX 9270117 9270231 -167703909 + L2 LINE L2 3193 3312 -1 2191 107 7 0 chrX 9270932 9271222 -167702918 + AluSq SINE Alu 2 293 -20 1858 164 52 30 chrX 9271805 9272130 -167702010 + THE1C LTR MaLR 1 336 -39 2041 105 0 0 chrX 9272130 9272396 -167701744 - AluSq SINE Alu -47 266 1 1858 164 52 30 chrX 9272396 9272437 -167701703 + THE1C LTR MaLR 336 375 0 1007 233 57 28 chrX 9273091 9273443 -167700697 - L1M4 LINE L1 -3145 3001 2640 3259 22 0 0 chrX 9274090 9274455 -167699685 + L1P2 LINE L1 5407 5771 -383 2084 115 7 3 chrX 9274851 9275138 -167699002 - AluSx SINE Alu -24 288 1 256 337 11 80 chrX 9275358 9275545 -167698595 + L2 LINE L2 2992 3165 -107 480 259 22 43 chrX 9275561 9275700 -167698440 + MIR SINE MIR 2 137 -125 1669 211 14 6 chrX 9276090 9276451 -167697689 + L1MB8 LINE L1 5813 6176 -2 1617 98 10 0 chrX 9276463 9276667 -167697473 + AluSq SINE Alu 1 206 -107 360 119 0 0 chrX 9276668 9276727 -167697413 + AluSq SINE Alu 244 302 0 23 0 0 0 chrX 9276871 9276894 -167697246 + AT_rich Low_complexity Low_complexity 1 23 0 2309 164 11 11 chrX 9276899 9277264 -167696876 + MLT1A1 LTR MaLR 1 365 0 190 264 230 43 chrX 9277358 9277572 -167696568 + L2 LINE L2 1985 2248 -1066 333 0 0 0 chrX 9277572 9277609 -167696531 + (CA)n Simple_repeat Simple_repeat 2 38 0 190 264 230 43 chrX 9277609 9277629 -167696511 + L2 LINE L2 2248 2263 -1051 262 365 54 40 chrX 9277812 9278034 -167696106 + L2 LINE L2 2543 2767 -547 388 360 54 30 chrX 9278205 9278502 -167695638 + L2 LINE L2 2969 3272 0 26 30 0 0 chrX 9279041 9279074 -167695066 + AT_rich Low_complexity Low_complexity 1 33 0 229 211 53 18 chrX 9279417 9279474 -167694666 - MLT1L LTR MaLR -50 565 507 2037 101 10 24 chrX 9280595 9280892 -167693248 - AluSq SINE Alu -16 297 5 1811 165 0 4 chrX 9281123 9281402 -167692738 + AluJb SINE Alu 1 278 -34 982 114 6 6 chrX 9281405 9281571 -167692569 + (GAAA)n Simple_repeat Simple_repeat 3 168 0 750 288 10 0 chrX 9282364 9282569 -167691571 - MLT1E3 LTR MaLR 0 624 418 358 203 75 60 chrX 9282670 9282755 -167691385 - MLT1E1 LTR MaLR -354 300 211 2692 154 7 0 chrX 9282755 9283178 -167690962 + MSTC LTR MaLR 3 428 0 358 203 75 60 chrX 9283178 9283225 -167690915 - MLT1E1 LTR MaLR -443 211 166 * 625 230 0 0 chrX 9283211 9283337 -167690803 - MLT1E1 LTR MaLR -521 133 8 232 130 56 0 chrX 9283602 9283656 -167690484 + GA-rich Low_complexity Low_complexity 3 59 0 3426 130 5 0 chrX 9283685 9284298 -167689842 + L1PA16 LINE L1 5431 6160 -6 237 255 62 125 chrX 9284338 9284546 -167689594 - L2 LINE L2 0 3313 3119 426 221 215 0 chrX 9285130 9285288 -167688852 + L1MC2 LINE L1 6140 6331 -13 261 124 93 0 chrX 9285548 9285677 -167688463 + (TAGA)n Simple_repeat Simple_repeat 1 141 0 3544 65 9 0 chrX 9285722 9286182 -167687958 - L1PA13 LINE L1 -4 6159 5696 253 275 81 47 chrX 9286231 9286489 -167687651 - L1M4 LINE L1 -1353 4793 4527 2401 60 0 0 chrX 9286539 9286854 -167687286 - AluY SINE Alu 0 315 1 1163 226 141 19 chrX 9286883 9287357 -167686783 - L1ME1 LINE L1 -18 6148 5617 388 289 58 5 chrX 9287383 9287591 -167686549 - L1M4 LINE L1 -1693 4453 4235 402 314 114 68 chrX 9288630 9289041 -167685099 - L1MEd LINE L1 -5674 445 16 602 124 0 0 chrX 9289905 9289994 -167684146 - AluSg/x SINE Alu -18 292 204 818 241 169 16 chrX 9290978 9291285 -167682855 - MLT1E LTR MaLR 0 593 240 273 250 0 0 chrX 9291485 9291549 -167682591 - HsTC2 DNA Tc2 -1798 100 37 795 143 0 7 chrX 9291605 9291745 -167682395 - L1MB8 LINE L1 -18 6160 6022 219 150 0 0 chrX 9291745 9291785 -167682355 + (TTTTTA)n Simple_repeat Simple_repeat 3 42 0 512 15 0 0 chrX 9292225 9292290 -167681850 + L1PA4 LINE L1 6091 6155 0 2239 144 45 13 chrX 9292319 9292716 -167681424 + MSTB LTR MaLR 1 410 -16 295 291 100 0 chrX 9292999 9293109 -167681031 - MER103 DNA DNA -44 122 2 363 271 26 46 chrX 9293207 9293358 -167680782 - L3 LINE CR1 -627 950 803 187 360 142 41 chrX 9293538 9293955 -167680185 - L3 LINE CR1 -930 647 189 1105 241 78 74 chrX 9294231 9294771 -167679369 + MLT1E LTR MaLR 52 593 0 251 188 0 0 chrX 9297509 9297557 -167676583 + L2 LINE L2 2769 2816 -498 1661 253 132 11 chrX 9297563 9298092 -167676048 + MLT1E LTR MaLR 1 593 0 442 291 20 92 chrX 9298165 9298512 -167675628 + L2 LINE L2 2991 3312 -1 248 180 66 0 chrX 9298630 9298691 -167675449 + (CATATA)n Simple_repeat Simple_repeat 6 70 0 465 338 49 13 chrX 9299836 9300061 -167674079 - MIR SINE MIR -10 252 20 329 241 110 97 chrX 9300061 9300289 -167673851 - HAL1 LINE L1 -2 2505 2275 271 318 11 0 chrX 9300300 9300388 -167673752 + MER63A DNA MER1_type 95 183 -27 542 288 0 0 chrX 9301192 9301324 -167672816 - MER58A DNA MER1_type 0 132 1 1788 120 54 37 chrX 9301584 9301935 -167672205 + THE1C LTR MaLR 1 357 -18 443 309 62 14 chrX 9302064 9302274 -167671866 + MIR SINE MIR 31 250 -12 5606 139 30 10 chrX 9302456 9304032 -167670108 - L1MA5A LINE L1 -5 6292 4685 271 321 9 36 chrX 9304396 9304508 -167669632 + MIR3 SINE MIR 92 200 -8 2204 140 22 36 chrX 9304901 9305314 -167668826 - Tigger2a DNA MER2_type -26 408 2 372 212 40 20 chrX 9307480 9307579 -167666561 - THE1C LTR MaLR -274 101 1 902 137 51 30 chrX 9307637 9307834 -167666306 + THE1C LTR MaLR 175 375 0 2288 99 0 10 chrX 9308309 9308621 -167665519 - AluSc SINE Alu 0 309 1 2391 99 0 0 chrX 9309515 9309819 -167664321 + AluSx SINE Alu 1 304 -8 22 0 0 0 chrX 9309831 9309853 -167664287 + AT_rich Low_complexity Low_complexity 1 22 0 1375 318 89 57 chrX 9310056 9311631 -167662509 - L1MCc LINE L1 -838 6103 4478 1352 93 0 0 chrX 9311672 9311844 -167662296 - AluY SINE Alu -12 299 128 572 309 104 48 chrX 9311960 9312642 -167661498 - L1MCc LINE L1 -2579 4362 3643 335 267 33 7 chrX 9312668 9312818 -167661322 - L1MCc LINE L1 -3316 3625 3472 554 248 119 91 chrX 9313255 9313741 -167660399 + MLT1G LTR MaLR 29 526 -41 1820 124 30 0 chrX 9314748 9315014 -167659126 + AluJb SINE Alu 1 274 -38 921 86 7 13 chrX 9315021 9315173 -167658967 + (GAAA)n Simple_repeat Simple_repeat 2 152 0 302 232 0 24 chrX 9316191 9316273 -167657867 - MER116 DNA Mariner 0 80 1 1489 263 67 61 chrX 9317549 9319382 -167654758 - L1MCc LINE L1 -4259 2863 817 1121 257 45 53 chrX 9319489 9319834 -167654306 - L1MCc LINE L1 -5840 583 237 2284 118 0 0 chrX 9319834 9320140 -167654000 - AluY SINE Alu -5 306 1 1121 257 45 53 chrX 9320140 9320196 -167653944 - L1MCc LINE L1 -6186 237 182 3422 108 12 0 chrX 9320196 9320697 -167653443 - MER84 LTR ERV1 0 507 1 1121 257 45 53 chrX 9320697 9320799 -167653341 - L1MCc LINE L1 -6241 182 83 284 235 12 12 chrX 9321328 9321409 -167652731 - Charlie8 DNA MER1_type -1996 421 341 1669 109 158 21 chrX 9321409 9321739 -167652401 + THE1C LTR MaLR 1 375 0 10797 71 13 0 chrX 9321756 9323175 -167650965 + HERVL LTR ERVL 2818 4254 -1400 3911 89 2 34 chrX 9323535 9324131 -167650009 - L1PB1 LINE L1 0 6151 5575 411 321 91 49 chrX 9324572 9324977 -167649163 + L1MC4a LINE L1 5521 5942 -1866 264 253 13 0 chrX 9325119 9325198 -167648942 - L1MC5 LINE L1 -73 7888 7809 363 23 0 0 chrX 9325256 9325300 -167648840 + (CA)n Simple_repeat Simple_repeat 1 44 0 334 309 61 44 chrX 9325473 9326133 -167648007 - L1M4 LINE L1 -3228 2918 2248 234 0 0 0 chrX 9327623 9327649 -167646491 + (ATG)n Simple_repeat Simple_repeat 1 26 0 826 232 30 15 chrX 9327653 9327671 -167646469 - L1 LINE L1 -856 5290 5274 298 0 23 23 chrX 9327671 9327714 -167646426 + (TA)n Simple_repeat Simple_repeat 2 44 0 826 232 30 15 chrX 9327714 9327958 -167646182 - L1 LINE L1 -872 5274 5024 344 290 107 76 chrX 9328946 9329104 -167645036 + MIR SINE MIR 1 169 -93 1353 268 76 16 chrX 9329104 9329590 -167644550 + MLT2B2 LTR ERVL 1 515 0 344 290 107 76 chrX 9329590 9329655 -167644485 + MIR SINE MIR 169 231 -31 394 237 29 4 chrX 9331667 9332022 -167642118 + (TA)n Simple_repeat Simple_repeat 1 363 0 22 0 0 0 chrX 9332068 9332090 -167642050 + AT_rich Low_complexity Low_complexity 1 22 0 215 137 55 0 chrX 9332301 9332374 -167641766 + (TA)n Simple_repeat Simple_repeat 2 78 0 22 70 0 0 chrX 9332377 9332420 -167641720 + AT_rich Low_complexity Low_complexity 1 43 0 6469 135 10 3 chrX 9332725 9334100 -167640040 + L1MA2 LINE L1 4922 6304 0 24 0 0 0 chrX 9334102 9334126 -167640014 + AT_rich Low_complexity Low_complexity 1 24 0 410 317 72 0 chrX 9334130 9334297 -167639843 + MIR SINE MIR 81 259 -3 231 36 0 0 chrX 9334692 9334720 -167639420 + (GA)n Simple_repeat Simple_repeat 1 28 0 214 370 14 0 chrX 9334762 9334835 -167639305 - L2 LINE L2 -674 2640 2567 740 226 91 68 chrX 9334888 9335197 -167638943 - MLT1C LTR MaLR -64 403 88 1054 88 0 0 chrX 9335197 9335334 -167638806 - AluSg/x SINE Alu -5 307 171 1895 65 0 8 chrX 9335434 9335679 -167638461 + L1PA5 LINE L1 5908 6150 -4 1913 129 0 3 chrX 9335748 9336073 -167638067 - L1P LINE L1 -1223 4923 4600 2973 70 0 12 chrX 9336076 9336490 -167637650 + L1PA8A LINE L1 5719 6127 -4 798 276 89 13 chrX 9337624 9338084 -167636056 + MER20B DNA MER1_type 209 703 -80 1243 229 75 5 chrX 9338175 9338559 -167635581 + L1M4 LINE L1 4760 5170 -976 2080 199 28 37 chrX 9339200 9339708 -167634432 + MLT1D LTR MaLR 1 503 -2 223 318 30 23 chrX 9339964 9340096 -167634044 + (CATG)n Simple_repeat Simple_repeat 4 136 0 299 308 93 6 chrX 9340115 9340287 -167633853 + MARNA DNA Mariner 292 478 -108 2200 116 137 11 chrX 9341302 9341682 -167632458 + MSTA LTR MaLR 1 428 0 25 51 0 0 chrX 9341782 9341821 -167632319 + AT_rich Low_complexity Low_complexity 1 39 0 187 302 16 0 chrX 9342163 9342226 -167631914 + L3b LINE CR1 1169 1232 -351 2323 90 3 0 chrX 9342567 9342867 -167631273 + AluSq SINE Alu 1 301 -12 198 0 0 0 chrX 9342870 9342892 -167631248 + (CA)n Simple_repeat Simple_repeat 1 22 0 2421 28 0 0 chrX 9342978 9343264 -167630876 - L1PA4 LINE L1 -3 6152 5867 1906 109 40 0 chrX 9344279 9344406 -167629734 + AluSx SINE Alu 1 121 -191 420 71 0 0 chrX 9344406 9344462 -167629678 + (CAA)n Simple_repeat Simple_repeat 1 56 0 1906 109 40 0 chrX 9344462 9344610 -167629530 + AluSx SINE Alu 121 287 -25 941 113 0 0 chrX 9345059 9345200 -167628940 - AluSp/q SINE Alu 0 313 173 403 273 164 77 chrX 9345267 9345890 -167628250 - L1M2 LINE L1 -5646 1203 527 1403 134 5 0 chrX 9347339 9347563 -167626577 - L1PA15 LINE L1 -5 6160 5936 231 114 0 0 chrX 9349778 9349813 -167624327 + (GAA)n Simple_repeat Simple_repeat 2 36 0 409 310 177 29 chrX 9349946 9350330 -167623810 - L2 LINE L2 -2024 1290 850 355 266 53 111 chrX 9350331 9350557 -167623583 + MIR SINE MIR 1 213 -49 657 265 10 15 chrX 9350611 9350815 -167623325 - L2 LINE L2 -2464 850 648 924 68 53 0 chrX 9351543 9351675 -167622465 + MER85 DNA T2_type 1 139 0 183 353 128 32 chrX 9352329 9352578 -167621562 + L2 LINE L2 2393 2665 -649 2227 121 0 0 chrX 9354144 9354450 -167619690 + AluSx SINE Alu 2 307 -5 799 201 26 0 chrX 9355679 9355833 -167618307 - FRAM SINE Alu -24 152 1 451 125 65 0 chrX 9355846 9356014 -167618126 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 304 136 64 0 chrX 9356029 9356154 -167617986 + (TATAA)n Simple_repeat Simple_repeat 2 134 0 379 142 68 0 chrX 9356169 9356331 -167617809 + (TATAA)n Simple_repeat Simple_repeat 2 174 0 333 98 92 7 chrX 9356384 9356537 -167617603 + (TA)n Simple_repeat Simple_repeat 1 166 0 295 236 11 34 chrX 9356767 9356856 -167617284 + G-rich Low_complexity Low_complexity 3 89 0 294 156 0 0 chrX 9356921 9356985 -167617155 + G-rich Low_complexity Low_complexity 1 64 0 252 272 20 54 chrX 9357034 9357228 -167616912 + (CGGGG)n Simple_repeat Simple_repeat 1 187 0 318 89 0 0 chrX 9357342 9357387 -167616753 + AluSq/x SINE Alu 90 134 -169 29 0 0 0 chrX 9357387 9357416 -167616724 + AT_rich Low_complexity Low_complexity 1 29 0 25 31 0 0 chrX 9357445 9357477 -167616663 + AT_rich Low_complexity Low_complexity 1 32 0 379 288 100 18 chrX 9357539 9357768 -167616372 + MER46C DNA MER2_type 1 248 -90 1550 179 50 0 chrX 9357773 9358052 -167616088 + MER1A DNA MER1_type 3 295 -234 1281 242 60 23 chrX 9358113 9358464 -167615676 + MLT1A1 LTR MaLR 1 364 -1 892 202 98 7 chrX 9360787 9361078 -167613062 - L1MB2 LINE L1 -34 6635 6359 * 1186 242 16 22 chrX 9361074 9361438 -167612702 - L1MB2 LINE L1 -1091 5553 5192 * 1252 244 49 16 chrX 9361430 9362008 -167612132 - L1MB2 LINE L1 -3862 2782 2186 * 1550 216 37 117 chrX 9362001 9362970 -167611170 + L1M3a LINE L1 777 1617 -4767 22 35 0 0 chrX 9363100 9363129 -167611011 + AT_rich Low_complexity Low_complexity 1 29 0 2291 90 3 3 chrX 9363223 9363523 -167610617 + AluY SINE Alu 1 300 -11 216 0 0 0 chrX 9363613 9363637 -167610503 + (T)n Simple_repeat Simple_repeat 1 24 0 668 155 16 39 chrX 9363649 9363778 -167610362 + FLAM_C SINE Alu 2 127 -16 200 206 32 16 chrX 9363992 9364055 -167610085 + (TA)n Simple_repeat Simple_repeat 2 65 0 38 39 0 0 chrX 9364897 9364949 -167609191 + AT_rich Low_complexity Low_complexity 1 52 0 1264 172 5 0 chrX 9365071 9365280 -167608860 + AluJb SINE Alu 95 304 -8 1277 155 5 14 chrX 9365310 9365517 -167608623 + AluJo SINE Alu 1 205 -107 751 176 0 0 chrX 9365797 9365916 -167608224 - FLAM_C SINE Alu -20 123 5 985 273 24 60 chrX 9365969 9366435 -167607705 + MLT1D LTR MaLR 3 451 -54 1820 159 24 11 chrX 9366465 9366837 -167607303 - L1MA8 LINE L1 -6 6285 5909 671 227 0 0 chrX 9366838 9366966 -167607174 + FLAM_C SINE Alu 2 129 -4 360 0 0 0 chrX 9366967 9367007 -167607133 + (TG)n Simple_repeat Simple_repeat 2 41 0 475 117 61 6 chrX 9367010 9367173 -167606967 + (TTATA)n Simple_repeat Simple_repeat 5 176 0 1041 232 42 110 chrX 9367661 9368519 -167605621 - L1MB2 LINE L1 -4657 1918 1039 406 300 175 21 chrX 9369052 9369332 -167604808 - L1MB2 LINE L1 -5855 687 365 28 48 0 0 chrX 9369694 9369736 -167604404 + AT_rich Low_complexity Low_complexity 1 42 0 22 70 0 0 chrX 9370213 9370256 -167603884 + AT_rich Low_complexity Low_complexity 1 43 0 1933 130 0 7 chrX 9370359 9370674 -167603466 - AluSx SINE Alu 0 315 3 258 304 36 18 chrX 9371318 9371430 -167602710 - MLT1H1 LTR MaLR -333 222 109 3349 206 73 9 chrX 9371894 9372384 -167601756 - L1MA9 LINE L1 0 6312 5855 207 0 0 0 chrX 9372384 9372407 -167601733 + (TG)n Simple_repeat Simple_repeat 2 24 0 3349 206 73 9 chrX 9372407 9373579 -167600561 - L1MA9 LINE L1 -457 5855 4540 933 199 6 17 chrX 9374780 9374961 -167599179 + MER5A DNA MER1_type 10 188 -1 1711 255 38 36 chrX 9375328 9375885 -167598255 - MER74A LTR ERVL 0 558 1 194 225 0 0 chrX 9376116 9376156 -167597984 - L2 LINE L2 -5 3308 3269 2253 117 0 0 chrX 9376303 9376612 -167597528 + AluY SINE Alu 1 309 -2 615 236 0 0 chrX 9376673 9376783 -167597357 - FLAM_A SINE Alu -32 110 1 849 277 36 27 chrX 9377660 9378071 -167596069 + L1PA12 LINE L1 1 415 -7166 370 370 52 35 chrX 9378417 9378590 -167595550 + L1M2 LINE L1 656 831 -6018 230 306 84 58 chrX 9378662 9378923 -167595217 + L1M2 LINE L1 800 1067 -5782 297 376 12 18 chrX 9379174 9379344 -167594796 + L1PA12 LINE L1 1776 1944 -5641 1546 235 75 27 chrX 9379428 9380276 -167593864 - L1MCb LINE L1 -4856 1189 815 518 227 76 65 chrX 9380276 9380786 -167593354 - MER4C LTR ERV1 0 685 1 335 293 40 30 chrX 9380802 9381000 -167593140 - MER4C-int LTR ERV1 -14 6584 6385 650 222 7 0 chrX 9381132 9381276 -167592864 - MER4C-int LTR ERV1 -335 5996 5852 422 36 18 0 chrX 9381297 9381353 -167592787 + (TCTA)n Simple_repeat Simple_repeat 4 60 0 7557 188 40 58 chrX 9381379 9381935 -167592205 - LTR49-int LTR ERV1 -497 5983 5418 2402 84 0 3 chrX 9381935 9382231 -167591909 - AluSg SINE Alu -15 295 1 7557 188 40 58 chrX 9382231 9384125 -167590015 - LTR49-int LTR ERV1 -1062 5418 2041 313 202 81 30 chrX 9384126 9384278 -167589862 - LTR49-int LTR ERV1 -3015 3316 1295 281 67 0 22 chrX 9385004 9385049 -167589091 + (CAG)n Simple_repeat Simple_repeat 2 45 0 921 208 25 72 chrX 9386615 9386851 -167587289 + MER50 LTR ERV1 510 734 0 9410 117 74 17 chrX 9386851 9388344 -167585796 + THE1C-int LTR MaLR 4 1580 0 2000 143 102 6 chrX 9388344 9388686 -167585454 + THE1C LTR MaLR 1 375 0 9180 178 8 4 chrX 9388691 9390380 -167583760 - L1P LINE L1 -743 5403 3707 2317 173 22 10 chrX 9390379 9390796 -167583344 - L1PB4 LINE L1 -115 6041 5620 * 785 211 23 6 chrX 9391305 9391476 -167582664 + MER92B LTR ERV1 1 174 -462 232 150 50 0 chrX 9391537 9391597 -167582543 + (TATATG)n Simple_repeat Simple_repeat 3 65 0 1317 203 117 34 chrX 9392411 9392829 -167581311 - MER92B LTR ERV1 0 636 184 509 114 190 0 chrX 9392843 9392968 -167581172 + MSTD LTR MaLR 199 383 -8 2270 204 8 6 chrX 9392971 9393446 -167580694 - L1MD3 LINE L1 -122 7873 7398 460 322 50 32 chrX 9393446 9393729 -167580411 + L2 LINE L2 2688 2975 -339 218 307 59 10 chrX 9393856 9393957 -167580183 + L2 LINE L2 3208 3313 0 805 169 0 8 chrX 9396554 9396678 -167577462 + FLAM_C SINE Alu 2 124 -19 240 35 0 0 chrX 9396682 9396711 -167577429 + (CAA)n Simple_repeat Simple_repeat 2 30 0 287 248 28 55 chrX 9397250 9397359 -167576781 + MIR SINE MIR 39 144 -64 210 71 0 0 chrX 9397581 9397609 -167576531 + (TAAAAA)n Simple_repeat Simple_repeat 3 30 0 780 153 51 0 chrX 9398453 9398571 -167575569 + AluJo/FLAM SINE Alu 3 126 -186 1738 162 14 17 chrX 9398572 9398869 -167575271 + AluJo SINE Alu 1 296 -16 46 62 0 0 chrX 9399162 9399243 -167574897 + GC_rich Low_complexity Low_complexity 1 81 0 235 238 24 24 chrX 9399249 9399375 -167574765 + (CGCGG)n Simple_repeat Simple_repeat 1 126 0 1658 234 83 45 chrX 9399738 9400221 -167573919 + MLT1D LTR MaLR 2 502 -3 419 258 37 43 chrX 9400224 9400387 -167573753 + MER5A DNA MER1_type 28 189 0 2939 188 33 5 chrX 9401630 9402199 -167571941 + L1MB3 LINE L1 5590 6174 -9 605 158 75 0 chrX 9402226 9402359 -167571781 + L1MB4 LINE L1 6038 6180 0 32 26 0 0 chrX 9402394 9402433 -167571707 + AT_rich Low_complexity Low_complexity 1 39 0 256 275 44 0 chrX 9402809 9402900 -167571240 - LTR33 LTR ERVL -400 121 27 30 45 0 0 chrX 9402909 9402953 -167571187 + AT_rich Low_complexity Low_complexity 1 44 0 2191 144 14 11 chrX 9403787 9404148 -167569992 - L1MA8 LINE L1 -4 6287 5926 571 207 8 8 chrX 9404633 9404754 -167569386 - MER96B DNA MER1_type? 0 417 297 2175 103 0 0 chrX 9404791 9405099 -167569041 - AluSx SINE Alu 0 308 1 254 253 162 0 chrX 9405181 9405335 -167568805 - MER96B DNA MER1_type? -238 179 1 541 188 26 8 chrX 9405702 9405819 -167568321 + L1MB7 LINE L1 6057 6175 -9 22 35 0 0 chrX 9406644 9406673 -167567467 + AT_rich Low_complexity Low_complexity 1 29 0 784 230 32 0 chrX 9406868 9407055 -167567085 - MER20B DNA MER1_type -25 194 2 224 326 97 14 chrX 9407067 9407211 -167566929 - MIR SINE MIR -43 219 64 1010 247 34 8 chrX 9407281 9407548 -167566592 + L1MD2 LINE L1 5571 5844 -515 1814 152 3 10 chrX 9407549 9407839 -167566301 + AluJo SINE Alu 1 288 -24 270 0 0 0 chrX 9407839 9407869 -167566271 + (TCTA)n Simple_repeat Simple_repeat 3 32 0 249 294 0 24 chrX 9407869 9407954 -167566186 + L1MC4 LINE L1 6615 6697 -1345 259 210 16 0 chrX 9407954 9408016 -167566124 - LTR66 LTR ERVL -171 439 377 733 251 72 78 chrX 9408016 9408240 -167565900 + L1ME1 LINE L1 5855 6037 -129 1820 163 3 10 chrX 9408240 9408535 -167565605 + AluJb SINE Alu 1 293 -19 733 251 72 78 chrX 9408535 9408645 -167565495 + L1ME1 LINE L1 6037 6146 -20 716 212 206 21 chrX 9409553 9409742 -167564398 + MER58A DNA MER1_type 1 224 0 1303 206 0 0 chrX 9409746 9409979 -167564161 - AluJo SINE Alu -79 233 1 235 341 44 7 chrX 9412028 9412163 -167561977 - LTR16B LTR ERVL -158 306 167 1547 181 88 9 chrX 9413103 9413439 -167560701 + MLT1A1 LTR MaLR 1 455 -2 1661 107 133 125 chrX 9414437 9414812 -167559328 + MER83B LTR ERV1 1 378 0 23125 115 142 62 chrX 9415411 9420975 -167553165 + L1PA7 LINE L1 12 6037 -117 37 0 0 0 chrX 9421341 9421378 -167552762 + AT_rich Low_complexity Low_complexity 1 37 0 2005 115 0 67 chrX 9423309 9423446 -167550694 + AluSc SINE Alu 1 146 -163 2379 98 0 3 chrX 9423446 9423753 -167550387 + AluSg SINE Alu 1 306 -4 2005 115 0 67 chrX 9423753 9423945 -167550195 + AluSc SINE Alu 146 308 -1 541 151 8 14 chrX 9424121 9424224 -167549916 - L1M2 LINE L1 -402 5749 5676 256 114 0 0 chrX 9424224 9424268 -167549872 - Alu SINE Alu 0 300 257 568 67 0 13 chrX 9424268 9424343 -167549797 - L1P5 LINE L1 -463 5688 5615 2988 103 15 5 chrX 9424343 9424742 -167549398 + L1PB1 LINE L1 5739 6150 -1 22 0 0 0 chrX 9425756 9425778 -167548362 + AT_rich Low_complexity Low_complexity 1 22 0 180 111 0 0 chrX 9425778 9425805 -167548335 + (GA)n Simple_repeat Simple_repeat 2 28 0 523 168 75 65 chrX 9425946 9426053 -167548087 + AluJo SINE Alu 17 124 -188 258 32 0 0 chrX 9426057 9426088 -167548052 + (CAA)n Simple_repeat Simple_repeat 2 32 0 1032 198 20 0 chrX 9427057 9427254 -167546886 + AluJo SINE Alu 110 310 -2 259 291 0 23 chrX 9427285 9427371 -167546769 + L2 LINE L2 1702 1785 -1529 343 334 126 26 chrX 9427405 9427655 -167546485 - L2 LINE L2 -816 2498 2204 2893 143 5 20 chrX 9427655 9428096 -167546044 + Tigger2a DNA MER2_type 1 434 0 343 334 126 26 chrX 9428096 9428186 -167545954 - L2 LINE L2 -1110 2204 2124 355 290 64 58 chrX 9428354 9428699 -167545441 - HAL1b LINE L1 -671 677 331 308 228 24 138 chrX 9429311 9429478 -167544662 + L1MEd LINE L1 1465 1612 -4918 295 283 96 18 chrX 9429542 9429708 -167544432 + L1MEd LINE L1 1654 1832 -4708 28 0 0 0 chrX 9429957 9429985 -167544155 + AT_rich Low_complexity Low_complexity 1 28 0 346 245 151 28 chrX 9430073 9430285 -167543855 + L1MEd LINE L1 2325 2562 -3978 235 360 70 3 chrX 9430322 9430622 -167543518 + L1MEd LINE L1 2693 3012 -3528 389 298 7 0 chrX 9430681 9430822 -167543318 + L1MEd LINE L1 3187 3328 -3212 335 213 0 0 chrX 9431380 9431440 -167542700 - MER58A DNA MER1_type -11 213 154 547 191 9 29 chrX 9431440 9431545 -167542595 - MER58A DNA MER1_type -3 104 2 2087 150 31 6 chrX 9431695 9432021 -167542119 + MER2 DNA MER2_type 12 345 0 429 55 0 0 chrX 9432326 9432381 -167541759 - MLT2A2 LTR ERVL 0 453 399 189 0 0 0 chrX 9432381 9432402 -167541738 + (TG)n Simple_repeat Simple_repeat 2 22 0 * 286 61 41 0 chrX 9432401 9432450 -167541690 + (TA)n Simple_repeat Simple_repeat 2 52 0 594 109 0 0 chrX 9432692 9432802 -167541338 + (G)n Simple_repeat Simple_repeat 1 110 0 274 141 0 77 chrX 9432803 9432882 -167541258 + (CGGGGG)n Simple_repeat Simple_repeat 1 72 0 306 157 65 19 chrX 9432932 9433040 -167541100 + (CG)n Simple_repeat Simple_repeat 1 113 0 21 36 0 0 chrX 9433055 9433083 -167541057 + GC_rich Low_complexity Low_complexity 1 28 0 2725 240 12 7 chrX 9433885 9434259 -167539881 + L1MEd LINE L1 4181 4562 -1978 565 91 13 0 chrX 9434259 9434336 -167539804 + MADE1 DNA Mariner 1 78 -2 2725 240 12 7 chrX 9434336 9434698 -167539442 + L1MEd LINE L1 4562 4921 -1619 5027 161 3 6 chrX 9434798 9436054 -167538086 + L1PA16 LINE L1 4923 6183 0 3453 165 28 18 chrX 9436278 9436992 -167537148 - L1MA7 LINE L1 0 6291 5571 479 180 0 0 chrX 9436999 9437088 -167537052 - L1MA7 LINE L1 -815 5476 5388 1330 147 49 0 chrX 9437095 9437319 -167536821 - Tigger3(Golem) DNA MER2_type 0 3038 2804 4246 213 76 31 chrX 9437319 9438547 -167535593 - L1MA7 LINE L1 -1193 4953 3671 775 224 54 18 chrX 9438891 9439114 -167535026 - MER46C DNA MER2_type -1 337 107 894 66 0 0 chrX 9439277 9439383 -167534757 + AluY SINE Alu 27 132 -179 25 0 0 0 chrX 9440008 9440033 -167534107 + AT_rich Low_complexity Low_complexity 1 25 0 234 0 0 0 chrX 9440672 9440698 -167533442 + (CA)n Simple_repeat Simple_repeat 2 27 0 283 260 0 13 chrX 9440771 9440848 -167533292 + L1M3c LINE L1 949 1024 -5117 808 237 32 41 chrX 9440872 9441265 -167532875 + L1M4 LINE L1 936 1742 -4729 2376 141 70 7 chrX 9441783 9442186 -167531954 - MSTA LTR MaLR 0 428 1 2198 89 3 0 chrX 9442736 9443027 -167531113 + AluSp SINE Alu 9 300 -13 798 257 69 5 chrX 9443156 9443358 -167530782 - MIR SINE MIR -42 220 6 34 72 0 0 chrX 9443639 9443708 -167530432 + AT_rich Low_complexity Low_complexity 1 69 0 4859 110 12 8 chrX 9444158 9444904 -167529236 - L1PA15 LINE L1 -13 6152 5404 1334 152 33 56 chrX 9444904 9445207 -167528933 + THE1C LTR MaLR 1 296 -79 301 111 28 139 chrX 9445206 9445278 -167528862 + MER84 LTR ERVI 11 74 -433 * 1414 214 105 21 chrX 9445278 9445745 -167528395 + MER84 LTR ERV1 2 507 0 2032 143 68 0 chrX 9446187 9446552 -167527588 - MLT1B LTR MaLR 0 390 1 344 296 138 50 chrX 9446741 9447080 -167527060 - L1M2 LINE L1 -5484 1365 757 324 59 137 0 chrX 9447268 9447421 -167526719 + (TA)n Simple_repeat Simple_repeat 2 175 0 2539 103 25 10 chrX 9447692 9448090 -167526050 - MLT2A1 LTR ERVL -40 404 1 1110 160 19 9 chrX 9449412 9449464 -167524676 - MER20 DNA MER1_type 0 219 169 207 0 0 0 chrX 9449464 9449487 -167524653 + (TG)n Simple_repeat Simple_repeat 1 23 0 1110 160 19 9 chrX 9449487 9449647 -167524493 - MER20 DNA MER1_type -50 169 5 281 268 108 84 chrX 9450125 9450310 -167523830 + HAL1 LINE L1 1234 1413 -1094 2839 102 21 37 chrX 9450310 9450743 -167523397 - MSTC LTR MaLR 0 428 3 281 268 108 84 chrX 9450743 9450983 -167523157 + HAL1 LINE L1 1413 1669 -838 408 297 103 20 chrX 9451381 9451752 -167522388 + L1M4 LINE L1 2443 2851 -3689 383 290 100 65 chrX 9452315 9452465 -167521675 + L1M4 LINE L1 4944 5087 -1453 1722 143 23 7 chrX 9452465 9452766 -167521374 + AluY SINE Alu 1 306 -5 383 290 100 65 chrX 9452766 9452894 -167521246 + L1M4 LINE L1 5087 5232 -1308 432 200 10 0 chrX 9455167 9455267 -167518873 + MER97c DNA MER1_type? 71 171 -919 2334 81 0 19 chrX 9456230 9456539 -167517601 + AluSx SINE Alu 1 303 -9 297 0 0 0 chrX 9456553 9456586 -167517554 + (TG)n Simple_repeat Simple_repeat 2 34 0 670 124 16 8 chrX 9457094 9457215 -167516925 + CT-rich Low_complexity Low_complexity 4 125 0 852 174 0 0 chrX 9457220 9457358 -167516782 - FLAM_C SINE Alu -5 138 1 608 150 44 7 chrX 9458610 9458835 -167515305 + AluJo SINE Alu 1 282 -30 186 43 0 0 chrX 9458837 9458860 -167515280 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1916 148 22 19 chrX 9459124 9459483 -167514657 + MLT1A1 LTR MaLR 6 365 0 207 196 22 0 chrX 9459519 9459565 -167514575 + (CA)n Simple_repeat Simple_repeat 1 47 0 473 250 29 15 chrX 9459888 9460024 -167514116 + Charlie8 DNA MER1_type 40 177 -2240 215 296 42 28 chrX 9460332 9460403 -167513737 + L2 LINE L2 2407 2478 -836 * 335 296 138 33 chrX 9460402 9460554 -167513586 - L2 LINE L2 -283 3030 2863 252 0 0 0 chrX 9460599 9460627 -167513513 + (TG)n Simple_repeat Simple_repeat 2 29 0 458 262 81 27 chrX 9462364 9462513 -167511627 + MIR SINE MIR 28 184 -78 1597 300 94 31 chrX 9464770 9465596 -167508544 + L2 LINE L2 472 1349 -1965 367 318 117 7 chrX 9465750 9465904 -167508236 - MIR SINE MIR -84 178 8 291 205 84 0 chrX 9468151 9468234 -167505906 - MER58B DNA MER1_type -3 338 249 257 291 60 8 chrX 9468269 9468403 -167505737 - HAL1b LINE L1 -4 1344 1204 1010 143 10 54 chrX 9468413 9468616 -167505524 - MER47A DNA MER2_type -1 365 172 911 196 29 6 chrX 9468630 9468803 -167505337 + FRAM SINE Alu 1 176 0 781 168 6 52 chrX 9468818 9468991 -167505149 - MER47A DNA MER2_type -200 166 2 381 265 56 37 chrX 9469009 9469333 -167504807 - HAL1b LINE L1 -187 1161 832 22 0 0 0 chrX 9469344 9469366 -167504774 + AT_rich Low_complexity Low_complexity 1 22 0 300 313 16 39 chrX 9469396 9469578 -167504562 - HAL1b LINE L1 -630 718 541 482 190 98 15 chrX 9469581 9469726 -167504414 + MLT1G1 LTR MaLR 213 415 -180 461 286 8 16 chrX 9470180 9470306 -167503834 + L2 LINE L2 3187 3311 -2 728 207 67 0 chrX 9471468 9471632 -167502508 - MER58A DNA MER1_type -15 209 35 255 309 0 0 chrX 9472110 9472191 -167501949 + Tigger3(Golem) DNA MER2_type 1 81 -2948 680 193 0 0 chrX 9472197 9472316 -167501824 + Tigger3(Golem) DNA MER2_type 2909 3027 -2 1714 162 67 63 chrX 9472506 9472750 -167501390 - MLT1C LTR MaLR -2 465 217 2070 70 4 0 chrX 9472750 9473020 -167501120 - L1PA8A LINE L1 -1 6130 5860 1714 162 67 63 chrX 9473020 9473238 -167500902 - MLT1C LTR MaLR -250 217 1 409 274 83 81 chrX 9474442 9474719 -167499421 - MLT1H LTR MaLR -142 407 127 1853 166 157 18 chrX 9474719 9475159 -167498981 + MLT1D LTR MaLR 5 505 0 409 274 83 81 chrX 9475159 9475253 -167498887 - MLT1H LTR MaLR -422 127 35 2065 172 53 47 chrX 9476064 9476534 -167497606 - MLT1D LTR MaLR -2 503 31 226 318 37 19 chrX 9476889 9476996 -167497144 + MIR3 SINE MIR 72 180 -28 1965 193 31 84 chrX 9477008 9477557 -167496583 - MLT2B1 LTR ERVL 0 520 1 207 69 0 0 chrX 9478806 9478835 -167495305 + (CA)n Simple_repeat Simple_repeat 2 30 0 185 363 59 0 chrX 9479416 9479518 -167494622 - MIR SINE MIR -121 141 34 216 305 191 9 chrX 9479823 9479928 -167494212 + L2 LINE L2 3141 3264 -8 486 261 34 45 chrX 9480576 9480752 -167493388 - MIR SINE MIR 0 262 89 342 286 10 0 chrX 9480886 9480984 -167493156 - MIR SINE MIR -130 132 34 342 0 0 0 chrX 9482261 9482299 -167491841 + (CA)n Simple_repeat Simple_repeat 2 39 0 1317 210 67 67 chrX 9482356 9482494 -167491646 - MER67D LTR ERV1 -3 511 374 1413 158 102 35 chrX 9482494 9482778 -167491362 + AluJo SINE Alu 1 303 -9 1317 210 67 67 chrX 9482778 9483086 -167491054 - MER67D LTR ERV1 -139 375 65 933 166 17 11 chrX 9483087 9483268 -167490872 + MLT1A1 LTR MaLR 5 186 -179 257 226 107 0 chrX 9483265 9483349 -167490791 + MLT1F1 LTR MaLR 475 567 0 * 245 296 69 84 chrX 9483523 9483726 -167490414 + L2 LINE L2 2830 3029 -243 298 316 49 31 chrX 9483822 9484047 -167490093 - L2 LINE L2 -556 2758 253